Citrus Sinensis ID: 028030

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-----
Protein Sequence
MAASLNLPKHTLPSFLPTQTPRTPPSQSLAIPSKSSSQSQFFGLRFSFSSNLPIPSSTSFKTSISAKVSKGQAPPSFTLKDQEGRNVSLSKFKGKPVVVYFYPADETPGCTKQACAFRDSYEKFKKAGAEVIGISGDDSSSHKAFAKKYRLPYTLLSDEGNKVRKEWGVPADFFGSLPGRQTYILDKNGVVQLIYNNQFQPEKHIDETLKFLQSS
Secondary Structure (PSIPRED)
cccccccccccccccccccccccccccccccccccccccEEEEEEEHHcccccccccccccHHHHccccccccccccEEccccccEEEccccccccEEEEEccccccccHHHHHHHHHHcHHHHHHcccEEEEEccccHHHHHHHHHHHccccEEEEcccHHHHHHHcccccccccccccEEEEEcccccEEEEEcccccccHHHHHHHHHHHcc
Secondary Structure Prediction (SSPRO)
cccEEcccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHcccccccccccEEEEcccEEEEEHHHHcccEEEEEEcccccccHHHHHHHHHHHcHHHHHHccEEEEEEEcccHHHHHHHHccccccccEHHcccHHHHHHccccccccccEEEEEEEEEccccEEEEEEEccccccccHHHHHHHHHcc
Coil and Loop (DISEMBL)
maaslnlpkhtlpsflptqtprtppsqslaipsksssqsqffglrfsfssnlpipsstsfktsisakvskgqappsftlkdqegrnvslskfkgkpvvvyfypadetpgctkqacAFRDSYEKFKKAGAEVigisgddssshkafakkyrlpytllsdegnkvrkewgvpadffgslpgrqtyildkNGVVQLIYnnqfqpekhIDETLKFLQSS
Flexible Loop (DISEMBL)
maaslnlpkhtlpsflptqtpRTPPSQSLAIPSKSSSQSQFFGLRFSFSSNLPIPSSTSFKTSISAKvskgqappsftlkdqegrnvslskfkgkpVVVYFYPADETPGCTKQACAFRDSYEKFKKAGAEVigisgddssshkAFAKKYRLPYTLLSDEGNKVRKEWGVPADFFGSLPGRQTYILDKNGVVQLIYNnqfqpekhiDETLKFLQSS
Low Complexity Region (SEG)
MAASLNLPKHTLPSFLptqtprtppsqsLAIPSKSSSQSQFFGLRFSFSSNLPIPSSTSFKTSISAKVSKGQAPPSFTLKDQEGRNVSLSKFKGKPVVVYFYPADETPGCTKQACAFRDSYEKFKKAGAEVIGISGDDSSSHKAFAKKYRLPYTLLSDEGNKVRKEWGVPADFFGSLPGRQTYILDKNGVVQLIYNNQFQPEKHIDETLKFLQSS
Disordered region (IsUnstruct)
******************************************************************************************KFKGKPVVVYFYPADETPGCTKQACAFRDSYEKFKKAGAEVIGIS********AFAKKYRLPYTLLSDEGNKVRKEWGVPADFFGSLPGRQTYILDKNGVVQLIYNNQFQP**************
Disordered Region (DISOPRED)
********KHTLP*************************SQFFGLRFSFSSNLPI****************GQAPPSFTLKDQEGRNVSLSKFKGKPVVVYFYPADETPGCTKQACAFRDSYEKFKKAGAEVIGISGDDSSSHKAFAKKYRLPYTLLSDEGNKVRKEWGVPADFFGSLPGRQTYILDKNGVVQLIYNNQFQPEKHIDETLKFLQS*
Disordered Region (DISEMBL)
MAASLNLPKHTLPSFLPT*********************QFFGLRFSFSSNLPIPSSTSFK*************PSFTLKDQEGRNVSLSKFKGKPVVVYFYPADETPGCTKQACAFRDSYEKFKKAGAEVIGISGDDSSSHKAFAKKYRLPYTLLSDEGNKVRKEWGVPADFFGSLPGRQTYILDKNGVVQLIYNNQFQPEKHIDETLKFLQSS
Disordered Region (DISPRO)
*********HTLPSFLPTQ**************************************TSFKTS*SAKVSKGQAPPSFTLKDQEGRNVSLSKFKGKPVVVYFYPADETPGCTKQACAFRDSYEKFKKAGAEVIGISGDDSSSHKAFAKKYRLPYTLLSDEGNKVRKEWGVPADFFGSLPGRQTYILDKNGVVQLIYNNQFQPEKHIDETLKFLQSS
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MAASLNLPKHTLPSFLPTQTPRTPPSQSLAIPSKSSSQSQFFGLRFSFSSNLPIPSSTSFKTSISAKVSKGQAPPSFTLKDQEGRNVSLSKFKGKPVVVYFYPADETPGCTKQACAFRDSYEKFKKAGAEVIGISGDDSSSHKAFAKKYRLPYTLLSDEGNKVRKEWGVPADFFGSLPGRQTYILDKNGVVQLIYNNQFQPEKHIDETLKFLQSS
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	215	2.2.26 [Sep-21-2011]
Q6QPJ6	213	Peroxiredoxin Q, chloropl	N/A	no	0.981	0.990	0.820	3e-93
Q75SY5	217	Peroxiredoxin Q, chloropl	N/A	no	0.986	0.976	0.760	8e-87
Q6UBI3	214	Peroxiredoxin Q, chloropl	N/A	no	0.976	0.981	0.766	1e-86
Q9MB35	186	Peroxiredoxin Q, chloropl	N/A	no	0.841	0.973	0.817	8e-84
Q9LU86	216	Peroxiredoxin Q, chloropl	yes	no	0.986	0.981	0.710	1e-80
P0C5D5	217	Peroxiredoxin Q, chloropl	yes	no	0.748	0.741	0.819	9e-77
P0C5D4	217	Putative peroxiredoxin Q,	N/A	no	0.748	0.741	0.819	9e-77
Q5S1S6	217	Peroxiredoxin Q, chloropl	N/A	no	0.846	0.838	0.740	3e-76
Q83CY8	151	Putative peroxiredoxin bc	no	no	0.655	0.933	0.428	3e-29
P0AE55	156	Putative peroxiredoxin bc	yes	no	0.665	0.916	0.402	3e-25

>sp|Q6QPJ6|PRXQ_POPJC Peroxiredoxin Q, chloroplastic OS=Populus jackii GN=PRXQ PE=1 SV=1

 Score =  340 bits (873), Expect = 3e-93,   Method: Compositional matrix adjust.
 Identities = 174/212 (82%), Positives = 193/212 (91%), Gaps = 1/212 (0%)

Query: 3   ASLNLPKHTLPSFLPTQTPRTPPSQSLAIPSKSSSQSQFFGLRFSFSSNLPIPSSTSFKT 62
           AS++LPKH+LPS LPT  P T  SQ+L I SKSS QSQF+GL+FS S++L IPSS+S K 
Sbjct: 2   ASISLPKHSLPSLLPTLKPITSSSQNLPILSKSS-QSQFYGLKFSHSTSLSIPSSSSVKN 60

Query: 63  SISAKVSKGQAPPSFTLKDQEGRNVSLSKFKGKPVVVYFYPADETPGCTKQACAFRDSYE 122
           +I AKV+KGQAPPSFTLKDQ+G+ +SLSKFKGKPVVVYFYPADETPGCTKQACAFRDSYE
Sbjct: 61  TIFAKVNKGQAPPSFTLKDQDGKTLSLSKFKGKPVVVYFYPADETPGCTKQACAFRDSYE 120

Query: 123 KFKKAGAEVIGISGDDSSSHKAFAKKYRLPYTLLSDEGNKVRKEWGVPADFFGSLPGRQT 182
           KFKKAGAEV+GISGDD SSHKAFAKKYRLP+TLLSDEGNK+RKEWGVPAD FG+LPGRQT
Sbjct: 121 KFKKAGAEVVGISGDDPSSHKAFAKKYRLPFTLLSDEGNKIRKEWGVPADLFGTLPGRQT 180

Query: 183 YILDKNGVVQLIYNNQFQPEKHIDETLKFLQS 214
           Y+LDK GVVQLIYNNQFQPEKHIDETLK LQS
Sbjct: 181 YVLDKKGVVQLIYNNQFQPEKHIDETLKLLQS 212

Reduces hydrogen peroxide and alkyl hydroperoxides with reducing equivalents provided through the thioredoxin system. Involved in the plant defense against pathogen.
Populus jackii (taxid: 640484)
EC: 1EC: .EC: 1EC: 1EC: .EC: 1EC: .EC: 1EC: 5

>sp|Q75SY5|PRXQ_GENTR Peroxiredoxin Q, chloroplastic OS=Gentiana triflora GN=AFP1 PE=1 SV=1

 Score =  319 bits (818), Expect = 8e-87,   Method: Compositional matrix adjust.
 Identities = 165/217 (76%), Positives = 181/217 (83%), Gaps = 5/217 (2%)

Query: 2   AASLNLPKHTLPSFLPTQTPRTPPSQSL-AIPSKSSSQSQFFGLRFSFSSNLPIPSSTSF 60
           A  L + KH+ PS L TQTP+   SQ+L  IP   SSQSQ  GL+F  SS   +P   S+
Sbjct: 3   AICLPVAKHSFPSLLNTQTPKPLFSQNLHTIPL--SSQSQICGLKFLISSPSSLPPPPSY 60

Query: 61  KTSIS--AKVSKGQAPPSFTLKDQEGRNVSLSKFKGKPVVVYFYPADETPGCTKQACAFR 118
              IS  AKVSKG  PP FTLKDQ+G+NVSL++FKGKPVVVYFYPADETPGCTKQACAFR
Sbjct: 61  SARISVFAKVSKGSVPPQFTLKDQDGKNVSLTEFKGKPVVVYFYPADETPGCTKQACAFR 120

Query: 119 DSYEKFKKAGAEVIGISGDDSSSHKAFAKKYRLPYTLLSDEGNKVRKEWGVPADFFGSLP 178
           DSYEKFKKAGAEVIGISGDD SSHKAFAKKYRLPYTLLSDEGNK+R+EWGVPAD FG+LP
Sbjct: 121 DSYEKFKKAGAEVIGISGDDPSSHKAFAKKYRLPYTLLSDEGNKIRREWGVPADLFGTLP 180

Query: 179 GRQTYILDKNGVVQLIYNNQFQPEKHIDETLKFLQSS 215
           GRQTY+LDKNG VQLIYNNQFQPEKHIDETLKFLQS+
Sbjct: 181 GRQTYVLDKNGTVQLIYNNQFQPEKHIDETLKFLQSA 217

Reduces hydrogen peroxide with reducing equivalents provided through the thioredoxin system. Involved in both resistance against fungal disease and oxidative stress.

Gentiana triflora (taxid: 55190)

EC: 1

EC: .

EC: 1

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: 5

>sp|Q6UBI3|PERQ_SUASA Peroxiredoxin Q, chloroplastic OS=Suaeda salsa GN=PRXQ PE=1 SV=1

 Score =  318 bits (816), Expect = 1e-86,   Method: Compositional matrix adjust.
 Identities = 164/214 (76%), Positives = 190/214 (88%), Gaps = 4/214 (1%)

Query: 3   ASLNLPKHTLPSF-LPTQTPRTPPSQSLAIPSKSSSQSQFFGLRFSFSSNLPIPSS-TSF 60
           A+L+LP H+ P+F LP+QTP+   SQ+L+I SKS+  SQF G++ S SS+L  P    S+
Sbjct: 2   ATLSLPNHS-PTFALPSQTPKPHSSQNLSIISKSA-HSQFCGIKLSHSSSLSPPLYPRSY 59

Query: 61  KTSISAKVSKGQAPPSFTLKDQEGRNVSLSKFKGKPVVVYFYPADETPGCTKQACAFRDS 120
           K SI AKVS+G  PP+FTLKDQ+G+NVSLSKFKGKPVVVYFYPADETPGCTKQACAFRDS
Sbjct: 60  KASIVAKVSEGSMPPAFTLKDQDGKNVSLSKFKGKPVVVYFYPADETPGCTKQACAFRDS 119

Query: 121 YEKFKKAGAEVIGISGDDSSSHKAFAKKYRLPYTLLSDEGNKVRKEWGVPADFFGSLPGR 180
           YEKFKKAGAEVIGISGDDSSSHKAF +KY+LPYTLLSDEGNKVRK+WGVP+D FG+LPGR
Sbjct: 120 YEKFKKAGAEVIGISGDDSSSHKAFKQKYKLPYTLLSDEGNKVRKDWGVPSDLFGALPGR 179

Query: 181 QTYILDKNGVVQLIYNNQFQPEKHIDETLKFLQS 214
           QTY+LD+NGVV+L+YNNQFQPEKHIDETLKFLQS
Sbjct: 180 QTYVLDRNGVVRLVYNNQFQPEKHIDETLKFLQS 213

Reduces hydrogen peroxide with reducing equivalents provided through the thioredoxin system.

Suaeda salsa (taxid: 126914)

EC: 1

EC: .

EC: 1

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: 5

>sp|Q9MB35|PERQ_SEDLI Peroxiredoxin Q, chloroplastic (Fragment) OS=Sedum lineare GN=PRXQ PE=1 SV=1

 Score =  309 bits (792), Expect = 8e-84,   Method: Compositional matrix adjust.
 Identities = 148/181 (81%), Positives = 163/181 (90%)

Query: 34  KSSSQSQFFGLRFSFSSNLPIPSSTSFKTSISAKVSKGQAPPSFTLKDQEGRNVSLSKFK 93
           ++SSQSQF GL+FS +S+   PS+   K SI AKV+KG  PP FTLKDQEGR VSLSKFK
Sbjct: 4   QTSSQSQFHGLKFSHASSFKSPSAPLRKNSIFAKVTKGSTPPPFTLKDQEGRPVSLSKFK 63

Query: 94  GKPVVVYFYPADETPGCTKQACAFRDSYEKFKKAGAEVIGISGDDSSSHKAFAKKYRLPY 153
           GKPVVVYFYPADETPGCTKQACAFRDSYEKFKKAGAEV+GISGD S SHKAFAKKY+LP+
Sbjct: 64  GKPVVVYFYPADETPGCTKQACAFRDSYEKFKKAGAEVVGISGDSSESHKAFAKKYKLPF 123

Query: 154 TLLSDEGNKVRKEWGVPADFFGSLPGRQTYILDKNGVVQLIYNNQFQPEKHIDETLKFLQ 213
           TLLSDEGNKVRKEWGVP+D FG+LPGR+TY+LDKNGVVQL+YNNQFQPEKHIDETLK LQ
Sbjct: 124 TLLSDEGNKVRKEWGVPSDLFGTLPGRETYVLDKNGVVQLVYNNQFQPEKHIDETLKLLQ 183

Query: 214 S 214
           S
Sbjct: 184 S 184

Reduces hydrogen peroxide with reducing equivalents provided through the thioredoxin system.

Sedum lineare (taxid: 114260)

EC: 1

EC: .

EC: 1

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: 5

>sp|Q9LU86|PRXQ_ARATH Peroxiredoxin Q, chloroplastic OS=Arabidopsis thaliana GN=PRXQ PE=1 SV=1

 Score =  299 bits (765), Expect = 1e-80,   Method: Compositional matrix adjust.
 Identities = 152/214 (71%), Positives = 175/214 (81%), Gaps = 2/214 (0%)

Query: 2   AASLNLPKHTLPSFLPTQTPRTPPSQSLAIPSKSSSQSQFFGLRFSFSSNLPIPSSTSFK 61
           ++S  L  HT    LP +      +Q  ++P+KSS +S FFG   + SS +   SS+S K
Sbjct: 5   SSSFTLCNHTTLRTLPLRKTLVTKTQ-FSVPTKSS-ESNFFGSTLTHSSYISPVSSSSLK 62

Query: 62  TSISAKVSKGQAPPSFTLKDQEGRNVSLSKFKGKPVVVYFYPADETPGCTKQACAFRDSY 121
             I AKV+KGQA P FTLKDQ G+ VSL K+KGKPVV+YFYPADETPGCTKQACAFRDSY
Sbjct: 63  GLIFAKVNKGQAAPDFTLKDQNGKPVSLKKYKGKPVVLYFYPADETPGCTKQACAFRDSY 122

Query: 122 EKFKKAGAEVIGISGDDSSSHKAFAKKYRLPYTLLSDEGNKVRKEWGVPADFFGSLPGRQ 181
           EKFKKAGAEVIGISGDDS+SHKAFA KY+LPYTLLSDEGNKVRK+WGVP D FG+LPGRQ
Sbjct: 123 EKFKKAGAEVIGISGDDSASHKAFASKYKLPYTLLSDEGNKVRKDWGVPGDLFGALPGRQ 182

Query: 182 TYILDKNGVVQLIYNNQFQPEKHIDETLKFLQSS 215
           TY+LDKNGVVQLIYNNQFQPEKHIDETLKFL+++
Sbjct: 183 TYVLDKNGVVQLIYNNQFQPEKHIDETLKFLKAA 216

Reduces hydrogen peroxide with reducing equivalents provided through the thioredoxin system. Could be involved in the photosystem II protection against hydrogen peroxide.

Arabidopsis thaliana (taxid: 3702)

EC: 1

EC: .

EC: 1

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: 5

>sp|P0C5D5|PRXQ_ORYSJ Peroxiredoxin Q, chloroplastic OS=Oryza sativa subsp. japonica GN=Os06g0196300 PE=1 SV=1

 Score =  286 bits (731), Expect = 9e-77,   Method: Compositional matrix adjust.
 Identities = 132/161 (81%), Positives = 145/161 (90%)

Query: 54  IPSSTSFKTSISAKVSKGQAPPSFTLKDQEGRNVSLSKFKGKPVVVYFYPADETPGCTKQ 113
           +PS+T     +  KVSKG A P+FTL+DQ+GR VSLSKFKG+PVVVYFYPADETPGCTKQ
Sbjct: 56  LPSTTGRNRIVCGKVSKGSAAPNFTLRDQDGRAVSLSKFKGRPVVVYFYPADETPGCTKQ 115

Query: 114 ACAFRDSYEKFKKAGAEVIGISGDDSSSHKAFAKKYRLPYTLLSDEGNKVRKEWGVPADF 173
           ACAFRDSYEKFKKAGAEVIGISGDD++SHK F KKY+LP+TLLSDEGNKVRKEWGVPAD 
Sbjct: 116 ACAFRDSYEKFKKAGAEVIGISGDDAASHKEFKKKYKLPFTLLSDEGNKVRKEWGVPADL 175

Query: 174 FGSLPGRQTYILDKNGVVQLIYNNQFQPEKHIDETLKFLQS 214
           FG+LPGRQTY+LDKNGVVQ IYNNQFQPEKHI ETLK LQS
Sbjct: 176 FGTLPGRQTYVLDKNGVVQYIYNNQFQPEKHIGETLKILQS 216

Reduces hydrogen peroxide with reducing equivalents provided through the thioredoxin system.

Oryza sativa subsp. japonica (taxid: 39947)

EC: 1

EC: .

EC: 1

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: 5

>sp|P0C5D4|PRXQ_ORYSI Putative peroxiredoxin Q, chloroplastic OS=Oryza sativa subsp. indica GN=OsI_22010 PE=1 SV=1

 Score =  286 bits (731), Expect = 9e-77,   Method: Compositional matrix adjust.
 Identities = 132/161 (81%), Positives = 145/161 (90%)

Query: 54  IPSSTSFKTSISAKVSKGQAPPSFTLKDQEGRNVSLSKFKGKPVVVYFYPADETPGCTKQ 113
           +PS+T     +  KVSKG A P+FTL+DQ+GR VSLSKFKG+PVVVYFYPADETPGCTKQ
Sbjct: 56  LPSTTGRNRIVCGKVSKGSAAPNFTLRDQDGRAVSLSKFKGRPVVVYFYPADETPGCTKQ 115

Query: 114 ACAFRDSYEKFKKAGAEVIGISGDDSSSHKAFAKKYRLPYTLLSDEGNKVRKEWGVPADF 173
           ACAFRDSYEKFKKAGAEVIGISGDD++SHK F KKY+LP+TLLSDEGNKVRKEWGVPAD 
Sbjct: 116 ACAFRDSYEKFKKAGAEVIGISGDDAASHKEFKKKYKLPFTLLSDEGNKVRKEWGVPADL 175

Query: 174 FGSLPGRQTYILDKNGVVQLIYNNQFQPEKHIDETLKFLQS 214
           FG+LPGRQTY+LDKNGVVQ IYNNQFQPEKHI ETLK LQS
Sbjct: 176 FGTLPGRQTYVLDKNGVVQYIYNNQFQPEKHIGETLKILQS 216

Reduces hydrogen peroxide with reducing equivalents provided through the thioredoxin system.

Oryza sativa subsp. indica (taxid: 39946)

EC: 1

EC: .

EC: 1

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: 5

>sp|Q5S1S6|PRXQ_WHEAT Peroxiredoxin Q, chloroplastic OS=Triticum aestivum GN=PRX1 PE=1 SV=1

 Score =  284 bits (726), Expect = 3e-76,   Method: Compositional matrix adjust.
 Identities = 137/185 (74%), Positives = 155/185 (83%), Gaps = 3/185 (1%)

Query: 33  SKSSSQSQFFGLRFSFSS--NLPIPSSTSFKTSI-SAKVSKGQAPPSFTLKDQEGRNVSL 89
            + S+ + F GLR   S+    P P   +  T I   KVSKG  PP+FTLKDQ+G+ VSL
Sbjct: 32  CRPSTSAAFHGLRAPASAFALAPAPRRRAASTGIVCGKVSKGSVPPNFTLKDQDGKTVSL 91

Query: 90  SKFKGKPVVVYFYPADETPGCTKQACAFRDSYEKFKKAGAEVIGISGDDSSSHKAFAKKY 149
           SKFKGKPVV+YFYPADETPGCTKQACAFRDSYEK+KKAGAEVIGISGDD++SHKAFAKKY
Sbjct: 92  SKFKGKPVVLYFYPADETPGCTKQACAFRDSYEKYKKAGAEVIGISGDDAASHKAFAKKY 151

Query: 150 RLPYTLLSDEGNKVRKEWGVPADFFGSLPGRQTYILDKNGVVQLIYNNQFQPEKHIDETL 209
           RLP+TLLSDEGNKVRKEWGVP+D FG+LPGRQTY+LDK GVVQ IYNNQFQPEKHI ETL
Sbjct: 152 RLPFTLLSDEGNKVRKEWGVPSDLFGTLPGRQTYVLDKKGVVQYIYNNQFQPEKHIGETL 211

Query: 210 KFLQS 214
           K +Q+
Sbjct: 212 KIIQN 216

Reduces hydrogen peroxide with reducing equivalents provided through the thioredoxin system.

Triticum aestivum (taxid: 4565)

EC: 1

EC: .

EC: 1

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: 5

>sp|Q83CY8|BCP_COXBU Putative peroxiredoxin bcp OS=Coxiella burnetii (strain RSA 493 / Nine Mile phase I) GN=bcp PE=1 SV=1

 Score =  128 bits (322), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 63/147 (42%), Positives = 93/147 (63%), Gaps = 6/147 (4%)

Query: 68  VSKGQAPPSFTLKDQEGRNVSLSKFKGKPVVVYFYPADETPGCTKQACAFRDSYEKFKKA 127
           +  GQ  P FTL   EG  +SL   KGK V++YFYP D+TPGCTK+AC FRD + +  KA
Sbjct: 3   IEVGQKAPIFTLPTDEGEMLSLDDLKGKKVILYFYPKDDTPGCTKEACGFRDVWSQLSKA 62

Query: 128 GAEVIGISGDDSSSHKAFAKKYRLPYTLLSDEGNKVRKEWGVPAD---FFGSLPG--RQT 182
           G  V+GIS D   +H++F +KY LP+TLLSD+ N V +++GV  D   F     G  R T
Sbjct: 63  GVVVLGISKDSVKAHQSFKQKYNLPFTLLSDKDNTVCEQYGVMVDKNRFGKKYKGIERTT 122

Query: 183 YILDKNGVVQLIYNNQFQPEKHIDETL 209
           +++D+ GV+  ++  + + + H+ E +
Sbjct: 123 FLIDEEGVISAVW-PKVKVDGHVAEVV 148

Coxiella burnetii (strain RSA 493 / Nine Mile phase I) (taxid: 227377)

EC: 1

EC: .

EC: 1

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: 5

>sp|P0AE55|BCP_SHIFL Putative peroxiredoxin bcp OS=Shigella flexneri GN=bcp PE=3 SV=1

 Score =  115 bits (287), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 60/149 (40%), Positives = 95/149 (63%), Gaps = 6/149 (4%)

Query: 71  GQAPPSFTLKDQEGRNVSLSKFKGKPVVVYFYPADETPGCTKQACAFRDSYEKFKKAGAE 130
           G   P F+L DQ+G  V+L+ F+G+ V+VYFYP   TPGCT QAC  RD+ ++ KKAG +
Sbjct: 7   GDIAPKFSLPDQDGEQVNLTDFQGQRVLVYFYPKAMTPGCTVQACGLRDNMDELKKAGVD 66

Query: 131 VIGISGDDSSSHKAFAKKYRLPYTLLSDEGNKVRKEWGVPAD--FFG-SLPG--RQTYIL 185
           V+GIS D       FA+K  L +TLLSDE ++V +++GV  +  F G +  G  R ++++
Sbjct: 67  VLGISTDKPEKLSRFAEKELLNFTLLSDEDHQVCEQFGVWGEKSFMGKTYDGIHRISFLI 126

Query: 186 DKNGVVQLIYNNQFQPEKHIDETLKFLQS 214
           D +G ++ ++++ F+   H D  L +L+ 
Sbjct: 127 DADGKIEHVFDD-FKTSNHHDVVLNWLKE 154

Shigella flexneri (taxid: 623)

EC: 1

EC: .

EC: 1

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: 5

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	215
75127599	213	RecName: Full=Peroxiredoxin Q, chloropla	0.981	0.990	0.820	2e-91
224069224	214	peroxiredoxin [Populus trichocarpa] gi|2	0.981	0.985	0.812	1e-89
255550347	213	bacterioferritin comigratory protein, pu	0.981	0.990	0.787	4e-89
224141563	214	peroxiredoxin [Populus trichocarpa] gi|1	0.981	0.985	0.784	5e-86
225444633	214	PREDICTED: peroxiredoxin Q, chloroplasti	0.981	0.985	0.798	7e-86
75138338	217	RecName: Full=Peroxiredoxin Q, chloropla	0.986	0.976	0.760	4e-85
75324751	214	RecName: Full=Peroxiredoxin Q, chloropla	0.976	0.981	0.766	7e-85
215254425	214	peroxiredoxin Q [Salicornia herbacea]	0.981	0.985	0.746	5e-84
351723611	237	uncharacterized protein LOC100500610 [Gl	0.976	0.886	0.744	2e-83
449441230	215	PREDICTED: peroxiredoxin Q, chloroplasti	0.981	0.981	0.789	1e-82

>gi|75127599|sp|Q6QPJ6.1|PRXQ_POPJC RecName: Full=Peroxiredoxin Q, chloroplastic; AltName: Full=Thioredoxin reductase; Flags: Precursor gi|42795441|gb|AAS46230.1| peroxiredoxin Q [Populus trichocarpa x Populus deltoides] gi|118489762|gb|ABK96681.1| unknown [Populus trichocarpa x Populus deltoides]

 Score =  340 bits (873), Expect = 2e-91,   Method: Compositional matrix adjust.
 Identities = 174/212 (82%), Positives = 193/212 (91%), Gaps = 1/212 (0%)

Query: 3   ASLNLPKHTLPSFLPTQTPRTPPSQSLAIPSKSSSQSQFFGLRFSFSSNLPIPSSTSFKT 62
           AS++LPKH+LPS LPT  P T  SQ+L I SKSS QSQF+GL+FS S++L IPSS+S K 
Sbjct: 2   ASISLPKHSLPSLLPTLKPITSSSQNLPILSKSS-QSQFYGLKFSHSTSLSIPSSSSVKN 60

Query: 63  SISAKVSKGQAPPSFTLKDQEGRNVSLSKFKGKPVVVYFYPADETPGCTKQACAFRDSYE 122
           +I AKV+KGQAPPSFTLKDQ+G+ +SLSKFKGKPVVVYFYPADETPGCTKQACAFRDSYE
Sbjct: 61  TIFAKVNKGQAPPSFTLKDQDGKTLSLSKFKGKPVVVYFYPADETPGCTKQACAFRDSYE 120

Query: 123 KFKKAGAEVIGISGDDSSSHKAFAKKYRLPYTLLSDEGNKVRKEWGVPADFFGSLPGRQT 182
           KFKKAGAEV+GISGDD SSHKAFAKKYRLP+TLLSDEGNK+RKEWGVPAD FG+LPGRQT
Sbjct: 121 KFKKAGAEVVGISGDDPSSHKAFAKKYRLPFTLLSDEGNKIRKEWGVPADLFGTLPGRQT 180

Query: 183 YILDKNGVVQLIYNNQFQPEKHIDETLKFLQS 214
           Y+LDK GVVQLIYNNQFQPEKHIDETLK LQS
Sbjct: 181 YVLDKKGVVQLIYNNQFQPEKHIDETLKLLQS 212

Source: Populus trichocarpa x Populus deltoides

Species: Populus trichocarpa x Populus deltoides

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224069224|ref|XP_002326305.1| peroxiredoxin [Populus trichocarpa] gi|222833498|gb|EEE71975.1| peroxiredoxin [Populus trichocarpa]

 Score =  334 bits (857), Expect = 1e-89,   Method: Compositional matrix adjust.
 Identities = 173/213 (81%), Positives = 193/213 (90%), Gaps = 2/213 (0%)

Query: 3   ASLNLPKHTLPSFLPTQTPRTPPSQSLAIPSKSSSQSQFFGLRFSFSSNLPIPSSTS-FK 61
           AS++LPKH+LPS LPT  P T  SQ+L I SKSS QSQF+GL+FS S++L IPSS+S  K
Sbjct: 2   ASISLPKHSLPSLLPTLKPITSSSQNLPILSKSS-QSQFYGLKFSHSTSLSIPSSSSSVK 60

Query: 62  TSISAKVSKGQAPPSFTLKDQEGRNVSLSKFKGKPVVVYFYPADETPGCTKQACAFRDSY 121
            +I AKV+KGQAPPSFTLKDQ+G+ +SLSKFKGKPVVVYFYPADETPGCTKQACAFRDSY
Sbjct: 61  NTIFAKVNKGQAPPSFTLKDQDGKTLSLSKFKGKPVVVYFYPADETPGCTKQACAFRDSY 120

Query: 122 EKFKKAGAEVIGISGDDSSSHKAFAKKYRLPYTLLSDEGNKVRKEWGVPADFFGSLPGRQ 181
           EKFKKAGAEV+GISGDD SSHKAF+KKYRLP+TLLSDEGNK+RKEWGVPAD FG+LPGRQ
Sbjct: 121 EKFKKAGAEVVGISGDDPSSHKAFSKKYRLPFTLLSDEGNKIRKEWGVPADLFGTLPGRQ 180

Query: 182 TYILDKNGVVQLIYNNQFQPEKHIDETLKFLQS 214
           TY+LDK GVVQLIYNNQFQPEKHIDETLK LQS
Sbjct: 181 TYVLDKKGVVQLIYNNQFQPEKHIDETLKLLQS 213

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255550347|ref|XP_002516224.1| bacterioferritin comigratory protein, putative [Ricinus communis] gi|223544710|gb|EEF46226.1| bacterioferritin comigratory protein, putative [Ricinus communis]

 Score =  333 bits (853), Expect = 4e-89,   Method: Compositional matrix adjust.
 Identities = 167/212 (78%), Positives = 190/212 (89%), Gaps = 1/212 (0%)

Query: 3   ASLNLPKHTLPSFLPTQTPRTPPSQSLAIPSKSSSQSQFFGLRFSFSSNLPIPSSTSFKT 62
           AS++LPKH+LP+ LP+Q PR   S +L I S+SS  SQF+GL+FS S++ PIPSS+S KT
Sbjct: 2   ASISLPKHSLPALLPSQKPRLQHSLNLPILSRSS-HSQFYGLKFSHSTSFPIPSSSSIKT 60

Query: 63  SISAKVSKGQAPPSFTLKDQEGRNVSLSKFKGKPVVVYFYPADETPGCTKQACAFRDSYE 122
           +I AKV+KGQ PP+FTLKDQ+G+NVSLSKFKGKPVVVYFYPADETPGCTKQACAFRDSYE
Sbjct: 61  AIFAKVNKGQVPPNFTLKDQDGKNVSLSKFKGKPVVVYFYPADETPGCTKQACAFRDSYE 120

Query: 123 KFKKAGAEVIGISGDDSSSHKAFAKKYRLPYTLLSDEGNKVRKEWGVPADFFGSLPGRQT 182
           KFKKAGAEV+GISGDD SSHKAFAKKYRLP+TLL DEGN+VRKEWG+P D FG+LPGRQT
Sbjct: 121 KFKKAGAEVVGISGDDPSSHKAFAKKYRLPFTLLCDEGNRVRKEWGIPGDLFGTLPGRQT 180

Query: 183 YILDKNGVVQLIYNNQFQPEKHIDETLKFLQS 214
           Y+LDK G VQLIYNNQFQPEKHIDETLK LQS
Sbjct: 181 YVLDKKGAVQLIYNNQFQPEKHIDETLKLLQS 212

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224141563|ref|XP_002324137.1| peroxiredoxin [Populus trichocarpa] gi|118482948|gb|ABK93386.1| unknown [Populus trichocarpa] gi|222865571|gb|EEF02702.1| peroxiredoxin [Populus trichocarpa]

 Score =  322 bits (826), Expect = 5e-86,   Method: Compositional matrix adjust.
 Identities = 167/213 (78%), Positives = 189/213 (88%), Gaps = 2/213 (0%)

Query: 3   ASLNLPKHTLPSFLPTQTPRTPPSQSLAIPSKSSSQSQFFGLRFSFSSNLPIPSSTS-FK 61
            S++LP H+LPS LPT  P+   SQ+L I SKSS +SQF+GL+FS SS+L IPSS+S  K
Sbjct: 2   VSISLPNHSLPSLLPTHKPKNLSSQNLPILSKSS-RSQFYGLKFSHSSSLSIPSSSSSVK 60

Query: 62  TSISAKVSKGQAPPSFTLKDQEGRNVSLSKFKGKPVVVYFYPADETPGCTKQACAFRDSY 121
           T+I AKV+KG+ PPSFTLKDQ+G+ VSLSKFKGKPVVVYFYPADE+P CTKQACAFRDSY
Sbjct: 61  TTIFAKVNKGEVPPSFTLKDQDGKTVSLSKFKGKPVVVYFYPADESPSCTKQACAFRDSY 120

Query: 122 EKFKKAGAEVIGISGDDSSSHKAFAKKYRLPYTLLSDEGNKVRKEWGVPADFFGSLPGRQ 181
           EKFKKAGAEV+GISGDD SSHKAFAK  RLP+TLLSDEGNK+RKEWGVPAD FG+LPGRQ
Sbjct: 121 EKFKKAGAEVVGISGDDPSSHKAFAKNNRLPFTLLSDEGNKIRKEWGVPADLFGALPGRQ 180

Query: 182 TYILDKNGVVQLIYNNQFQPEKHIDETLKFLQS 214
           TY+LDKNG+VQLIYNNQFQPEKHIDETLK LQS
Sbjct: 181 TYVLDKNGMVQLIYNNQFQPEKHIDETLKLLQS 213

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225444633|ref|XP_002275936.1| PREDICTED: peroxiredoxin Q, chloroplastic [Vitis vinifera] gi|297738519|emb|CBI27764.3| unnamed protein product [Vitis vinifera] gi|342160856|gb|AEL16464.1| peroxiredoxin Q [Vitis vinifera]

 Score =  322 bits (825), Expect = 7e-86,   Method: Compositional matrix adjust.
 Identities = 170/213 (79%), Positives = 188/213 (88%), Gaps = 2/213 (0%)

Query: 3   ASLNLPKHTLPSFLPTQTPRTPPSQSLAIPSKSSSQSQFFGLRFSFSSNLPIPSSTSFKT 62
           ASL LPKH+LPS L TQ P+TP   SL + SKSS  SQF+GL FS S +LP+PSS+S K 
Sbjct: 2   ASLFLPKHSLPSLLSTQIPKTPSLHSLPLVSKSS-HSQFYGLTFSSSPSLPLPSSSSPKK 60

Query: 63  S-ISAKVSKGQAPPSFTLKDQEGRNVSLSKFKGKPVVVYFYPADETPGCTKQACAFRDSY 121
           + I AKVSKGQ PP FTLKDQ+G+ VSLSKFKGKPVVVYFYPADETPGCTKQACAFRDSY
Sbjct: 61  ASIFAKVSKGQVPPPFTLKDQDGKTVSLSKFKGKPVVVYFYPADETPGCTKQACAFRDSY 120

Query: 122 EKFKKAGAEVIGISGDDSSSHKAFAKKYRLPYTLLSDEGNKVRKEWGVPADFFGSLPGRQ 181
           EKFKKAGA+V+GISGDD SSHKAFAKKYRLP+TLLSD+GNKVRK+WGVPAD FG+LPGRQ
Sbjct: 121 EKFKKAGAQVVGISGDDPSSHKAFAKKYRLPFTLLSDDGNKVRKDWGVPADLFGTLPGRQ 180

Query: 182 TYILDKNGVVQLIYNNQFQPEKHIDETLKFLQS 214
           TY+LDK GVVQLIYNNQFQPEKHIDETLK LQ+
Sbjct: 181 TYVLDKKGVVQLIYNNQFQPEKHIDETLKLLQT 213

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|75138338|sp|Q75SY5.1|PRXQ_GENTR RecName: Full=Peroxiredoxin Q, chloroplastic; AltName: Full=Thioredoxin reductase; Flags: Precursor gi|39748708|dbj|BAD04985.1| peroxiredoxin Q [Gentiana triflora]

 Score =  319 bits (818), Expect = 4e-85,   Method: Compositional matrix adjust.
 Identities = 165/217 (76%), Positives = 181/217 (83%), Gaps = 5/217 (2%)

Query: 2   AASLNLPKHTLPSFLPTQTPRTPPSQSL-AIPSKSSSQSQFFGLRFSFSSNLPIPSSTSF 60
           A  L + KH+ PS L TQTP+   SQ+L  IP   SSQSQ  GL+F  SS   +P   S+
Sbjct: 3   AICLPVAKHSFPSLLNTQTPKPLFSQNLHTIPL--SSQSQICGLKFLISSPSSLPPPPSY 60

Query: 61  KTSIS--AKVSKGQAPPSFTLKDQEGRNVSLSKFKGKPVVVYFYPADETPGCTKQACAFR 118
              IS  AKVSKG  PP FTLKDQ+G+NVSL++FKGKPVVVYFYPADETPGCTKQACAFR
Sbjct: 61  SARISVFAKVSKGSVPPQFTLKDQDGKNVSLTEFKGKPVVVYFYPADETPGCTKQACAFR 120

Query: 119 DSYEKFKKAGAEVIGISGDDSSSHKAFAKKYRLPYTLLSDEGNKVRKEWGVPADFFGSLP 178
           DSYEKFKKAGAEVIGISGDD SSHKAFAKKYRLPYTLLSDEGNK+R+EWGVPAD FG+LP
Sbjct: 121 DSYEKFKKAGAEVIGISGDDPSSHKAFAKKYRLPYTLLSDEGNKIRREWGVPADLFGTLP 180

Query: 179 GRQTYILDKNGVVQLIYNNQFQPEKHIDETLKFLQSS 215
           GRQTY+LDKNG VQLIYNNQFQPEKHIDETLKFLQS+
Sbjct: 181 GRQTYVLDKNGTVQLIYNNQFQPEKHIDETLKFLQSA 217

Source: Gentiana triflora

Species: Gentiana triflora

Genus: Gentiana

Family: Gentianaceae

Order: Gentianales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|75324751|sp|Q6UBI3.1|PERQ_SUASA RecName: Full=Peroxiredoxin Q, chloroplastic; AltName: Full=Thioredoxin reductase; Flags: Precursor gi|34420838|gb|AAQ67661.1| peroxiredoxin Q [Suaeda salsa]

 Score =  318 bits (816), Expect = 7e-85,   Method: Compositional matrix adjust.
 Identities = 164/214 (76%), Positives = 190/214 (88%), Gaps = 4/214 (1%)

Query: 3   ASLNLPKHTLPSF-LPTQTPRTPPSQSLAIPSKSSSQSQFFGLRFSFSSNLPIPSS-TSF 60
           A+L+LP H+ P+F LP+QTP+   SQ+L+I SKS+  SQF G++ S SS+L  P    S+
Sbjct: 2   ATLSLPNHS-PTFALPSQTPKPHSSQNLSIISKSA-HSQFCGIKLSHSSSLSPPLYPRSY 59

Query: 61  KTSISAKVSKGQAPPSFTLKDQEGRNVSLSKFKGKPVVVYFYPADETPGCTKQACAFRDS 120
           K SI AKVS+G  PP+FTLKDQ+G+NVSLSKFKGKPVVVYFYPADETPGCTKQACAFRDS
Sbjct: 60  KASIVAKVSEGSMPPAFTLKDQDGKNVSLSKFKGKPVVVYFYPADETPGCTKQACAFRDS 119

Query: 121 YEKFKKAGAEVIGISGDDSSSHKAFAKKYRLPYTLLSDEGNKVRKEWGVPADFFGSLPGR 180
           YEKFKKAGAEVIGISGDDSSSHKAF +KY+LPYTLLSDEGNKVRK+WGVP+D FG+LPGR
Sbjct: 120 YEKFKKAGAEVIGISGDDSSSHKAFKQKYKLPYTLLSDEGNKVRKDWGVPSDLFGALPGR 179

Query: 181 QTYILDKNGVVQLIYNNQFQPEKHIDETLKFLQS 214
           QTY+LD+NGVV+L+YNNQFQPEKHIDETLKFLQS
Sbjct: 180 QTYVLDRNGVVRLVYNNQFQPEKHIDETLKFLQS 213

Source: Suaeda salsa

Species: Suaeda salsa

Genus: Suaeda

Family: Amaranthaceae

Order: Caryophyllales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|215254425|gb|ACJ64204.1| peroxiredoxin Q [Salicornia herbacea]

 Score =  316 bits (809), Expect = 5e-84,   Method: Compositional matrix adjust.
 Identities = 159/213 (74%), Positives = 186/213 (87%), Gaps = 2/213 (0%)

Query: 3   ASLNLPKHTLPSFLPTQTPRTPPSQSLAIPSKSSSQSQFFGLRFSFSSNLPIPSST-SFK 61
           ASL+L  H L    P+QTP+T  SQ+L+I SKS+ QSQF G++ S +S+   P ++ S+ 
Sbjct: 2   ASLSLSNHFLTYAPPSQTPKTHLSQNLSIISKST-QSQFCGIKLSSTSSASSPLTSRSYN 60

Query: 62  TSISAKVSKGQAPPSFTLKDQEGRNVSLSKFKGKPVVVYFYPADETPGCTKQACAFRDSY 121
            +I AKV++G  PP+FTLKDQ+G+NVSLSKFKGKPVVVYFYPADETPGCTKQACAFRDSY
Sbjct: 61  AAIVAKVTEGSMPPAFTLKDQDGKNVSLSKFKGKPVVVYFYPADETPGCTKQACAFRDSY 120

Query: 122 EKFKKAGAEVIGISGDDSSSHKAFAKKYRLPYTLLSDEGNKVRKEWGVPADFFGSLPGRQ 181
           EKFKKAGAEVIGISGDDSSSHK+F +KY+LPYTLLSDEGNKVRKEW VP+D FG+LPGRQ
Sbjct: 121 EKFKKAGAEVIGISGDDSSSHKSFKQKYKLPYTLLSDEGNKVRKEWQVPSDLFGALPGRQ 180

Query: 182 TYILDKNGVVQLIYNNQFQPEKHIDETLKFLQS 214
           TY+LDKNGVV+L+YNNQFQPEKHIDETLKFLQS
Sbjct: 181 TYVLDKNGVVRLVYNNQFQPEKHIDETLKFLQS 213

Source: Salicornia herbacea

Species: Salicornia herbacea

Genus: Salicornia

Family: Amaranthaceae

Order: Caryophyllales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|351723611|ref|NP_001236773.1| uncharacterized protein LOC100500610 [Glycine max] gi|255630752|gb|ACU15737.1| unknown [Glycine max]

 Score =  314 bits (804), Expect = 2e-83,   Method: Compositional matrix adjust.
 Identities = 157/211 (74%), Positives = 180/211 (85%), Gaps = 1/211 (0%)

Query: 3   ASLNLPKHTLPSFLPTQTPRTPPSQSLAIPSKSSSQSQFFGLRFSFSSNLPIPSSTSFKT 62
           ASL +P H +P+ L T +P  P SQ+L  PS + S SQFFGL+ S SS   IPSS+S K 
Sbjct: 2   ASLTVPNHCVPTLLRTHSPNHPSSQNLPFPS-TPSNSQFFGLKLSHSSVSSIPSSSSLKG 60

Query: 63  SISAKVSKGQAPPSFTLKDQEGRNVSLSKFKGKPVVVYFYPADETPGCTKQACAFRDSYE 122
           +I AKV+KG  PP+FTLKDQ G+NVSLS FKGKPV+VYFYPADETPGCTK+ACAFRDSYE
Sbjct: 61  TIFAKVNKGSKPPNFTLKDQNGKNVSLSYFKGKPVIVYFYPADETPGCTKRACAFRDSYE 120

Query: 123 KFKKAGAEVIGISGDDSSSHKAFAKKYRLPYTLLSDEGNKVRKEWGVPADFFGSLPGRQT 182
           KF KAGA V+GISGDD++SHKAFA KYRLP+TLLSDEGNKVRKEWGVP DFFGSLPGR+T
Sbjct: 121 KFMKAGAVVVGISGDDAASHKAFASKYRLPFTLLSDEGNKVRKEWGVPGDFFGSLPGRET 180

Query: 183 YILDKNGVVQLIYNNQFQPEKHIDETLKFLQ 213
           Y+LDKNGVVQL+YNNQFQPEKHIDETLK+ +
Sbjct: 181 YVLDKNGVVQLVYNNQFQPEKHIDETLKYFR 211

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449441230|ref|XP_004138385.1| PREDICTED: peroxiredoxin Q, chloroplastic-like [Cucumis sativus] gi|449499188|ref|XP_004160744.1| PREDICTED: peroxiredoxin Q, chloroplastic-like [Cucumis sativus]

 Score =  311 bits (797), Expect = 1e-82,   Method: Compositional matrix adjust.
 Identities = 169/214 (78%), Positives = 183/214 (85%), Gaps = 3/214 (1%)

Query: 3   ASLNLPKHTLPSFLPTQTPRTPPSQSLAIPSKSSSQSQFFGLRFS--FSSNLPIPSSTSF 60
           ASL  PK +L S LP+ TP+TP S  L   S+SS+ S F G + S     +    SS+SF
Sbjct: 2   ASLPHPKLSLTSLLPSLTPKTPSSNKLPFLSRSST-SHFHGAQISHHILPSSLPSSSSSF 60

Query: 61  KTSISAKVSKGQAPPSFTLKDQEGRNVSLSKFKGKPVVVYFYPADETPGCTKQACAFRDS 120
           K +ISAKV+KGQAPP FTLKDQEGRNVSLSKFKGKPVVVYFYPADETPGCTKQACAFRDS
Sbjct: 61  KFTISAKVNKGQAPPPFTLKDQEGRNVSLSKFKGKPVVVYFYPADETPGCTKQACAFRDS 120

Query: 121 YEKFKKAGAEVIGISGDDSSSHKAFAKKYRLPYTLLSDEGNKVRKEWGVPADFFGSLPGR 180
           YEKFKKAGAEV+GISGDDSSSHKAFAKKYRLP+TLLSDEGNKVRKEWGVPAD FG+LPGR
Sbjct: 121 YEKFKKAGAEVVGISGDDSSSHKAFAKKYRLPFTLLSDEGNKVRKEWGVPADLFGTLPGR 180

Query: 181 QTYILDKNGVVQLIYNNQFQPEKHIDETLKFLQS 214
           QTY+LDKNGVVQLIYNNQFQPEKHI ETLK LQS
Sbjct: 181 QTYVLDKNGVVQLIYNNQFQPEKHIGETLKLLQS 214

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	215
DICTYBASE|DDB_G0275755	198	DDB_G0275755 "AhpC/TSA family	0.739	0.803	0.462	2.4e-37
DICTYBASE|DDB_G0279973	152	DDB_G0279973 "AhpC/TSA family	0.674	0.953	0.489	2.2e-34
DICTYBASE|DDB_G0268192	154	DDB_G0268192 "AhpC/TSA family	0.669	0.935	0.469	3.6e-34
DICTYBASE|DDB_G0269270	154	DDB_G0269270 "AhpC/TSA family	0.669	0.935	0.469	5.8e-34
DICTYBASE|DDB_G0269260	154	DDB_G0269260 "AhpC/TSA family	0.669	0.935	0.469	9.5e-34
DICTYBASE|DDB_G0285273	157	DDB_G0285273 "AhpC/TSA family	0.665	0.910	0.444	2.3e-30
UNIPROTKB|Q83CY8	151	bcp "Putative peroxiredoxin bc	0.655	0.933	0.435	4.4e-29
TIGR_CMR|CBU_0963	151	CBU_0963 "bacterioferritin com	0.655	0.933	0.435	4.4e-29
DICTYBASE|DDB_G0269392	142	DDB_G0269392 "AhpC/TSA family	0.595	0.901	0.467	2.8e-27
DICTYBASE|DDB_G0279949	151	DDB_G0279949 "AhpC/TSA family	0.646	0.920	0.402	1.8e-25

DICTYBASE|DDB_G0275755 DDB_G0275755 "AhpC/TSA family protein" [Dictyostelium discoideum (taxid:44689)]

 Score = 401 (146.2 bits), Expect = 2.4e-37, P = 2.4e-37
 Identities = 75/162 (46%), Positives = 110/162 (67%)

Query:    52 LPIPSSTSFKTSISAKVSKGQAPPSFTLKDQEGRNVSLSKFKGKPVVVYFYPADETPGCT 111
             LP  S+ S  +S   K+  G   P FT  D++G++ SL  F  K +V+YFYP D TPGCT
Sbjct:    35 LPFLSNKS--SSKMTKLKVGDQAPDFTASDKDGKSYSLKDFADKVLVLYFYPKDSTPGCT 92

Query:   112 KQACAFRDSYEKFKKAGAEVIGISGDDSSSHKAFAKKYRLPYTLLSDEGNKVRKEWGVPA 171
             K+AC+FRD+YE+F +AGA V+G+S DD+ SH  F+ KYRLP+TLL+D   ++ K++GV  
Sbjct:    93 KEACSFRDNYEQFTEAGAVVVGVSSDDAESHSKFSAKYRLPFTLLTDNKGEMAKKYGVKK 152

Query:   172 DFFGSLPGRQTYILDKNGVVQLIYNNQFQPEKHIDETLKFLQ 213
             +    +PGR T+I+DKN  + LI+++    E HI E+LK ++
Sbjct:   153 ELL-LIPGRSTFIIDKNQKIALIHSSLLNAESHITESLKVIE 193

GO:0055114 "oxidation-reduction process" evidence=IEA

GO:0016491 "oxidoreductase activity" evidence=IEA

GO:0016209 "antioxidant activity" evidence=IEA

GO:0008150 "biological_process" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0044351 "macropinocytosis" evidence=RCA

DICTYBASE|DDB_G0279973 DDB_G0279973 "AhpC/TSA family protein" [Dictyostelium discoideum (taxid:44689)]

 Score = 373 (136.4 bits), Expect = 2.2e-34, P = 2.2e-34
 Identities = 73/149 (48%), Positives = 100/149 (67%)

Query:    67 KVSKGQAPPSFTLKDQEGRNVSLSKF-KG-KPVVVYFYPADETPGCTKQACAFRDSYEKF 124
             K+  G   P FT  D++G+ VSL  F K  KP+V+YFYP DET  CTK+AC FRD Y+KF
Sbjct:     3 KLKVGDQAPDFTCPDKDGKLVSLKDFIKDQKPIVLYFYPKDETSICTKEACEFRDKYQKF 62

Query:   125 KKAGAEVIGISGDDSSSHKAFAKKYRLPYTLLSDEGNKVRKEWGVPADFFGSLPGRQTYI 184
              +AGA+VIG+S DD+ SH  F  KY LP+TLL+D+G ++ K +G   +F    PGR T+I
Sbjct:    63 IEAGADVIGVSRDDAESHSKFTSKYSLPFTLLTDKGGELAKLYGAEGNFLS--PGRVTFI 120

Query:   185 LDKNGVVQLIYNNQFQPEKHIDETLKFLQ 213
             +DKNG V L ++       HI+E+LK ++
Sbjct:   121 IDKNGKVALNHSALLSATSHIEESLKVIE 149

GO:0055114 "oxidation-reduction process" evidence=IEA

GO:0016491 "oxidoreductase activity" evidence=IEA

GO:0016209 "antioxidant activity" evidence=IEA

GO:0008150 "biological_process" evidence=ND

GO:0005575 "cellular_component" evidence=ND

DICTYBASE|DDB_G0268192 DDB_G0268192 "AhpC/TSA family protein" [Dictyostelium discoideum (taxid:44689)]

 Score = 371 (135.7 bits), Expect = 3.6e-34, P = 3.6e-34
 Identities = 70/149 (46%), Positives = 101/149 (67%)

Query:    67 KVSKGQAPPSFTLKDQEGRNVSLSKFKGK--PVVVYFYPADETPGCTKQACAFRDSYEKF 124
             K+  G   P F  K+  G+ V+L +FK K  P+V+YFYP D +P CTK++C FRD Y+KF
Sbjct:     3 KLKVGNVAPDFEAKNYLGQTVTLKEFKDKSQPIVLYFYPKDNSPVCTKESCEFRDKYQKF 62

Query:   125 KKAGAEVIGISGDDSSSHKAFAKKYRLPYTLLSDEGNKVRKEWGVPADFFGSLPGRQTYI 184
              +AGAEVIG+S D   SHK+F  KY LP+TLL+D+ +K+ K +GV       LPGR+T+I
Sbjct:    63 IEAGAEVIGVSSDGEDSHKSFVSKYSLPFTLLTDKHSKLAKLYGVNGIL---LPGRKTFI 119

Query:   185 LDKNGVVQLIYNNQFQPEKHIDETLKFLQ 213
             +DK+G++  I++       HIDE+LK ++
Sbjct:   120 IDKHGIIAGIHDGLLSSTSHIDESLKIIE 148

GO:0055114 "oxidation-reduction process" evidence=IEA

GO:0016491 "oxidoreductase activity" evidence=IEA

GO:0016209 "antioxidant activity" evidence=IEA

GO:0008150 "biological_process" evidence=ND

GO:0005575 "cellular_component" evidence=ND

DICTYBASE|DDB_G0269270 DDB_G0269270 "AhpC/TSA family protein" [Dictyostelium discoideum (taxid:44689)]

 Score = 369 (135.0 bits), Expect = 5.8e-34, P = 5.8e-34
 Identities = 70/149 (46%), Positives = 101/149 (67%)

Query:    67 KVSKGQAPPSFTLKDQEGRNVSLSKFKGK--PVVVYFYPADETPGCTKQACAFRDSYEKF 124
             K+  G   P F  K+  G+ V+L +FK K  P+V+YFYP D +P CTK++C FRD Y+KF
Sbjct:     3 KLKVGNIAPDFEAKNYLGQTVTLKEFKEKSQPIVLYFYPKDNSPVCTKESCEFRDKYQKF 62

Query:   125 KKAGAEVIGISGDDSSSHKAFAKKYRLPYTLLSDEGNKVRKEWGVPADFFGSLPGRQTYI 184
              +AGAEVIG+S D   SHK+F  KY LP+TLL+D+ +K+ K +GV       LPGR+T+I
Sbjct:    63 IEAGAEVIGVSSDGEDSHKSFVSKYSLPFTLLTDKHSKLAKLYGVNGIL---LPGRKTFI 119

Query:   185 LDKNGVVQLIYNNQFQPEKHIDETLKFLQ 213
             +DK+G++  I++       HIDE+LK ++
Sbjct:   120 IDKHGIIAGIHDGLLSSTSHIDESLKIIE 148

GO:0055114 "oxidation-reduction process" evidence=IEA

GO:0016491 "oxidoreductase activity" evidence=IEA

GO:0016209 "antioxidant activity" evidence=IEA

GO:0008150 "biological_process" evidence=ND

GO:0005575 "cellular_component" evidence=ND

DICTYBASE|DDB_G0269260 DDB_G0269260 "AhpC/TSA family protein" [Dictyostelium discoideum (taxid:44689)]

 Score = 367 (134.2 bits), Expect = 9.5e-34, P = 9.5e-34
 Identities = 70/149 (46%), Positives = 100/149 (67%)

Query:    67 KVSKGQAPPSFTLKDQEGRNVSLSKFKGK--PVVVYFYPADETPGCTKQACAFRDSYEKF 124
             K+  G   P F  K+  G+ V+L +FK K  P+V+YFYP D +P CTK +C FRD Y+KF
Sbjct:     3 KLKVGNIAPDFEAKNYLGQTVTLKEFKEKSQPIVLYFYPKDNSPVCTKDSCEFRDKYQKF 62

Query:   125 KKAGAEVIGISGDDSSSHKAFAKKYRLPYTLLSDEGNKVRKEWGVPADFFGSLPGRQTYI 184
              +AGAEVIG+S D   SHK+F  KY LP+TLL+D+ +K+ K +GV       LPGR+T+I
Sbjct:    63 IEAGAEVIGVSSDGEDSHKSFVSKYSLPFTLLTDKHSKLAKLYGVNGIL---LPGRKTFI 119

Query:   185 LDKNGVVQLIYNNQFQPEKHIDETLKFLQ 213
             +DK+G++  I++       HIDE+LK ++
Sbjct:   120 IDKHGIIAGIHDGLLSSTSHIDESLKIIE 148

GO:0055114 "oxidation-reduction process" evidence=IEA

GO:0016491 "oxidoreductase activity" evidence=IEA

GO:0016209 "antioxidant activity" evidence=IEA

GO:0008150 "biological_process" evidence=ND

GO:0005575 "cellular_component" evidence=ND

DICTYBASE|DDB_G0285273 DDB_G0285273 "AhpC/TSA family protein" [Dictyostelium discoideum (taxid:44689)]

 Score = 335 (123.0 bits), Expect = 2.3e-30, P = 2.3e-30
 Identities = 64/144 (44%), Positives = 91/144 (63%)

Query:    67 KVSKGQAPPSFTLKDQEGRNVSLSKFKGKPVVVYFYPADETPGCTKQACAFRDSYEKFKK 126
             K+      P F+  DQ G+N+SLS+F GKP+V++FYP D++  CT +AC FRD Y  F  
Sbjct:     3 KLKVDDQAPDFSGIDQNGKNISLSQFNGKPLVLFFYPKDDSKTCTNEACEFRDKYSSFVN 62

Query:   127 AGAEVIGISGDDSSSHKAFAKKYRLPYTLLSDEGNKVRKEWGVPADFFGSLPGRQTYILD 186
             AGA+VIGIS DD  SH  F  K  LPYTL+SD+  ++ K++GV  +     PGR T+IL+
Sbjct:    63 AGADVIGISNDDPESHANFISKNSLPYTLISDKDGEIAKKYGVHKELL-FFPGRTTFILN 121

Query:   187 KNGVVQLIYNNQFQPEKHIDETLK 210
             K+  +   +++      HI E+LK
Sbjct:   122 KDHKIIGTHSSLINASSHIQESLK 145

GO:0055114 "oxidation-reduction process" evidence=IEA

GO:0016491 "oxidoreductase activity" evidence=IEA

GO:0016209 "antioxidant activity" evidence=IEA

GO:0008150 "biological_process" evidence=ND

GO:0005575 "cellular_component" evidence=ND

UNIPROTKB|Q83CY8 bcp "Putative peroxiredoxin bcp" [Coxiella burnetii RSA 493 (taxid:227377)]

 Score = 323 (118.8 bits), Expect = 4.4e-29, P = 4.4e-29
 Identities = 64/147 (43%), Positives = 94/147 (63%)

Query:    68 VSKGQAPPSFTLKDQEGRNVSLSKFKGKPVVVYFYPADETPGCTKQACAFRDSYEKFKKA 127
             +  GQ  P FTL   EG  +SL   KGK V++YFYP D+TPGCTK+AC FRD + +  KA
Sbjct:     3 IEVGQKAPIFTLPTDEGEMLSLDDLKGKKVILYFYPKDDTPGCTKEACGFRDVWSQLSKA 62

Query:   128 GAEVIGISGDDSSSHKAFAKKYRLPYTLLSDEGNKVRKEWGVPADF--FGS-LPG--RQT 182
             G  V+GIS D   +H++F +KY LP+TLLSD+ N V +++GV  D   FG    G  R T
Sbjct:    63 GVVVLGISKDSVKAHQSFKQKYNLPFTLLSDKDNTVCEQYGVMVDKNRFGKKYKGIERTT 122

Query:   183 YILDKNGVVQLIYNNQFQPEKHIDETL 209
             +++D+ GV+  ++  + + + H+ E +
Sbjct:   123 FLIDEEGVISAVWP-KVKVDGHVAEVV 148

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

TIGR_CMR|CBU_0963 CBU_0963 "bacterioferritin comigratory protein" [Coxiella burnetii RSA 493 (taxid:227377)]

 Score = 323 (118.8 bits), Expect = 4.4e-29, P = 4.4e-29
 Identities = 64/147 (43%), Positives = 94/147 (63%)

Query:    68 VSKGQAPPSFTLKDQEGRNVSLSKFKGKPVVVYFYPADETPGCTKQACAFRDSYEKFKKA 127
             +  GQ  P FTL   EG  +SL   KGK V++YFYP D+TPGCTK+AC FRD + +  KA
Sbjct:     3 IEVGQKAPIFTLPTDEGEMLSLDDLKGKKVILYFYPKDDTPGCTKEACGFRDVWSQLSKA 62

Query:   128 GAEVIGISGDDSSSHKAFAKKYRLPYTLLSDEGNKVRKEWGVPADF--FGS-LPG--RQT 182
             G  V+GIS D   +H++F +KY LP+TLLSD+ N V +++GV  D   FG    G  R T
Sbjct:    63 GVVVLGISKDSVKAHQSFKQKYNLPFTLLSDKDNTVCEQYGVMVDKNRFGKKYKGIERTT 122

Query:   183 YILDKNGVVQLIYNNQFQPEKHIDETL 209
             +++D+ GV+  ++  + + + H+ E +
Sbjct:   123 FLIDEEGVISAVWP-KVKVDGHVAEVV 148

GO:0008150 "biological_process" evidence=ND

GO:0003674 "molecular_function" evidence=ND

DICTYBASE|DDB_G0269392 DDB_G0269392 "AhpC/TSA family protein" [Dictyostelium discoideum (taxid:44689)]

 Score = 306 (112.8 bits), Expect = 2.8e-27, P = 2.8e-27
 Identities = 64/137 (46%), Positives = 90/137 (65%)

Query:    67 KVSKGQAPPSFTLKDQEGRNVSLSKFKGK--PVVVYFYPADETPGCTKQACAFRDSYEKF 124
             K+  G   P F  K+  G+ V+L +FK K  P+V+YFYP D +P C K +C FRD Y+K 
Sbjct:     3 KLKVGNIAPDFEAKNYLGQIVTLKEFKEKSQPIVLYFYPKDNSPECQK-SCEFRDKYQKS 61

Query:   125 KKAGAEVIGISGDDSSSHKAFAKKYRLPYTLLSDEGNKVRKEWGVPADFFGSLPGRQTYI 184
              +AGAEVIG+S D   SHK+F  KY LP+TLL+D+ +K+ K +GV       LPGR+T+I
Sbjct:    62 IEAGAEVIGVSSDGEDSHKSFVSKYSLPFTLLTDKHSKLAKLYGVNGIL---LPGRKTFI 118

Query:   185 LDKNG---VVQLIYNNQ 198
             +DK+G   V  ++Y+ Q
Sbjct:   119 IDKHGFMAVFMMVYSVQ 135

GO:0055114 "oxidation-reduction process" evidence=IEA

GO:0016491 "oxidoreductase activity" evidence=IEA

GO:0016209 "antioxidant activity" evidence=IEA

GO:0008150 "biological_process" evidence=ND

GO:0005575 "cellular_component" evidence=ND

DICTYBASE|DDB_G0279949 DDB_G0279949 "AhpC/TSA family protein" [Dictyostelium discoideum (taxid:44689)]

 Score = 289 (106.8 bits), Expect = 1.8e-25, P = 1.8e-25
 Identities = 58/144 (40%), Positives = 90/144 (62%)

Query:    71 GQAPPSFTLKDQEGRNVSLSKFKGKPVVVYFYPADETPGCTKQACAFRDSYEKFKKAGAE 130
             G+  P FTL +++G+  +L  F GKP+V++FYP +    CT++ C FRDSYEKF + GAE
Sbjct:     7 GEIAPEFTLPNKDGKLFNLKDFAGKPLVIFFYPNNIGWVCTREVCYFRDSYEKFIEMGAE 66

Query:   131 VIGISGDDSSSHKAFAKKYRLPYTLLSDEGNKVRKEWGVPADFFGSLPGRQTYILDKNGV 190
             V G S +   +HK F   +R+ YT+LSD+   + K +GV     G LPGR T+++DKNG 
Sbjct:    67 VPGNSPNTMDNHKKFHAAHRVNYTILSDKNGAIGKLYGVN----GLLPGRVTFVIDKNGK 122

Query:   191 VQLIYNNQF-QPEKHIDETLKFLQ 213
             + L ++  +     HI+ +L  ++
Sbjct:   123 IALNHHTSWLSHSSHIENSLSVIE 146

GO:0055114 "oxidation-reduction process" evidence=IEA

GO:0016491 "oxidoreductase activity" evidence=IEA

GO:0016209 "antioxidant activity" evidence=IEA

GO:0008150 "biological_process" evidence=ND

GO:0005575 "cellular_component" evidence=ND

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q75SY5	PRXQ_GENTR	1, ., 1, 1, ., 1, ., 1, 5	0.7603	0.9860	0.9769	N/A	no
P0C5D4	PRXQ_ORYSI	1, ., 1, 1, ., 1, ., 1, 5	0.8198	0.7488	0.7419	N/A	no
P0C5D5	PRXQ_ORYSJ	1, ., 1, 1, ., 1, ., 1, 5	0.8198	0.7488	0.7419	yes	no
Q6UBI3	PERQ_SUASA	1, ., 1, 1, ., 1, ., 1, 5	0.7663	0.9767	0.9813	N/A	no
Q9MB35	PERQ_SEDLI	1, ., 1, 1, ., 1, ., 1, 5	0.8176	0.8418	0.9731	N/A	no
Q5S1S6	PRXQ_WHEAT	1, ., 1, 1, ., 1, ., 1, 5	0.7405	0.8465	0.8387	N/A	no
Q9LU86	PRXQ_ARATH	1, ., 1, 1, ., 1, ., 1, 5	0.7102	0.9860	0.9814	yes	no
Q6QPJ6	PRXQ_POPJC	1, ., 1, 1, ., 1, ., 1, 5	0.8207	0.9813	0.9906	N/A	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
4th Layer	1.11.1.15	0.994
3rd Layer	1.11.1	0.998

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	215
cd03017	140	cd03017, PRX_BCP, Peroxiredoxin (PRX) family, Bact	1e-64
COG1225	157	COG1225, Bcp, Peroxiredoxin [Posttranslational mod	3e-60
cd02971	140	cd02971, PRX_family, Peroxiredoxin (PRX) family; c	1e-51
pfam00578	124	pfam00578, AhpC-TSA, AhpC/TSA family	7e-51
cd03018	149	cd03018, PRX_AhpE_like, Peroxiredoxin (PRX) family	2e-37
PRK09437	154	PRK09437, bcp, thioredoxin-dependent thiol peroxid	1e-36
COG0450	194	COG0450, AhpC, Peroxiredoxin [Posttranslational mo	1e-27
cd03015	173	cd03015, PRX_Typ2cys, Peroxiredoxin (PRX) family,	2e-25
pfam08534	142	pfam08534, Redoxin, Redoxin	2e-24
cd02966	116	cd02966, TlpA_like_family, TlpA-like family; compo	3e-22
PRK13190	202	PRK13190, PRK13190, putative peroxiredoxin; Provis	7e-16
cd03016	203	cd03016, PRX_1cys, Peroxiredoxin (PRX) family, 1-c	3e-15
PTZ00253	199	PTZ00253, PTZ00253, tryparedoxin peroxidase; Provi	5e-14
PRK15000	200	PRK15000, PRK15000, peroxidase; Provisional	1e-13
PRK03147	173	PRK03147, PRK03147, thiol-disulfide oxidoreductase	2e-13
cd02970	149	cd02970, PRX_like2, Peroxiredoxin (PRX)-like 2 fam	2e-13
PRK13599	215	PRK13599, PRK13599, putative peroxiredoxin; Provis	3e-13
PRK13191	215	PRK13191, PRK13191, putative peroxiredoxin; Provis	1e-12
TIGR03137	187	TIGR03137, AhpC, peroxiredoxin	2e-12
cd02969	171	cd02969, PRX_like1, Peroxiredoxin (PRX)-like 1 fam	4e-12
PRK13189	222	PRK13189, PRK13189, peroxiredoxin; Provisional	5e-12
PRK10382	187	PRK10382, PRK10382, alkyl hydroperoxide reductase	1e-09
pfam13905	94	pfam13905, Thioredoxin_8, Thioredoxin-like	3e-07
cd03014	143	cd03014, PRX_Atyp2cys, Peroxiredoxin (PRX) family,	3e-07
cd02968	142	cd02968, SCO, SCO (an acronym for Synthesis of Cyt	8e-07
PLN02399	236	PLN02399, PLN02399, phospholipid hydroperoxide glu	1e-06
PTZ00137	261	PTZ00137, PTZ00137, 2-Cys peroxiredoxin; Provision	8e-06
cd03010	127	cd03010, TlpA_like_DsbE, TlpA-like family, DsbE (a	1e-05
cd03011	123	cd03011, TlpA_like_ScsD_MtbDsbE, TlpA-like family,	2e-05
COG2077	158	COG2077, Tpx, Peroxiredoxin [Posttranslational mod	3e-05
COG0526	127	COG0526, TrxA, Thiol-disulfide isomerase and thior	2e-04
COG1999	207	COG1999, COG1999, Uncharacterized protein SCO1/Sen	3e-04
cd02964	132	cd02964, TryX_like_family, Tryparedoxin (TryX)-lik	0.001
PRK00522	167	PRK00522, tpx, lipid hydroperoxide peroxidase; Pro	0.001
cd07382	255	cd07382, MPP_DR1281, Deinococcus radiodurans DR128	0.002

>gnl|CDD|239315 cd03017, PRX_BCP, Peroxiredoxin (PRX) family, Bacterioferritin comigratory protein (BCP) subfamily; composed of thioredoxin-dependent thiol peroxidases, widely expressed in pathogenic bacteria, that protect cells against toxicity from reactive oxygen species by reducing and detoxifying hydroperoxides

 Score =  195 bits (499), Expect = 1e-64
 Identities = 68/138 (49%), Positives = 91/138 (65%), Gaps = 3/138 (2%)

Query: 75  PSFTLKDQEGRNVSLSKFKGKPVVVYFYPADETPGCTKQACAFRDSYEKFKKAGAEVIGI 134
           P FTL DQ+G  VSLS  +GKPVV+YFYP D+TPGCTK+AC FRD YE+FK  GA VIG+
Sbjct: 4   PDFTLPDQDGETVSLSDLRGKPVVLYFYPKDDTPGCTKEACDFRDLYEEFKALGAVVIGV 63

Query: 135 SGDDSSSHKAFAKKYRLPYTLLSDEGNKVRKEWGVPADFFGSLPG--RQTYILDKNGVVQ 192
           S D   SH  FA+KY LP+ LLSD   K+ K +GV  +      G  R T+++D +G + 
Sbjct: 64  SPDSVESHAKFAEKYGLPFPLLSDPDGKLAKAYGVWGEKKKKYMGIERSTFLIDPDGKIV 123

Query: 193 LIYNNQFQPEKHIDETLK 210
            ++    +P+ H +E L+
Sbjct: 124 KVWRK-VKPKGHAEEVLE 140

The protein was named BCP based on its electrophoretic mobility before its function was known. BCP shows substrate selectivity toward fatty acid hydroperoxides rather than hydrogen peroxide or alkyl hydroperoxides. BCP contains the peroxidatic cysteine but appears not to possess a resolving cysteine (some sequences, not all, contain a second cysteine but its role is still unknown). Unlike other PRXs, BCP exists as a monomer. The plant homolog of BCP is PRX Q, which is expressed only in leaves and is cellularly localized in the chloroplasts and the guard cells of stomata. Also included in this subfamily is the fungal nuclear protein, Dot5p (for disrupter of telomere silencing protein 5), which functions as an alkyl-hydroperoxide reductase during post-diauxic growth. Length = 140

>gnl|CDD|224146 COG1225, Bcp, Peroxiredoxin [Posttranslational modification, protein turnover, chaperones]

 Score =  185 bits (472), Expect = 3e-60
 Identities = 66/154 (42%), Positives = 92/154 (59%), Gaps = 6/154 (3%)

Query: 65  SAKVSKGQAPPSFTLKDQEGRNVSLSKFKGKPVVVYFYPADETPGCTKQACAFRDSYEKF 124
              +  G   P F L DQ+G  VSLS  +GKPVV+YFYP D TPGCT +AC FRD  E+F
Sbjct: 1   MMMLKVGDKAPDFELPDQDGETVSLSDLRGKPVVLYFYPKDFTPGCTTEACDFRDLLEEF 60

Query: 125 KKAGAEVIGISGDDSSSHKAFAKKYRLPYTLLSDEGNKVRKEWGV--PADFFGS---LPG 179
           +K GA V+GIS D   SHK FA+K+ L + LLSDE  +V + +GV      +G       
Sbjct: 61  EKLGAVVLGISPDSPKSHKKFAEKHGLTFPLLSDEDGEVAEAYGVWGEKKMYGKEYMGIE 120

Query: 180 RQTYILDKNGVVQLIYNNQFQPEKHIDETLKFLQ 213
           R T+++D +G ++ ++    + + H DE L  L+
Sbjct: 121 RSTFVIDPDGKIRYVWRK-VKVKGHADEVLAALK 153

Length = 157

>gnl|CDD|239269 cd02971, PRX_family, Peroxiredoxin (PRX) family; composed of the different classes of PRXs including many proteins originally known as bacterioferritin comigratory proteins (BCP), based on their electrophoretic mobility before their function was identified

 Score =  163 bits (414), Expect = 1e-51
 Identities = 62/139 (44%), Positives = 80/139 (57%), Gaps = 4/139 (2%)

Query: 75  PSFTLKDQEGRNVSLSKFKGKPVVVYFYPADETPGCTKQACAFRDSYEKFKKAGAEVIGI 134
           P FTL   +G  VSLS FKGK VV++FYP D TP CT + CAFRD  E+F K GAEV+G+
Sbjct: 3   PDFTLPATDGGEVSLSDFKGKWVVLFFYPKDFTPVCTTELCAFRDLAEEFAKGGAEVLGV 62

Query: 135 SGDDSSSHKAFAKKYR-LPYTLLSDEGNKVRKEWGV--PADFFGSLPGRQTYILDKNGVV 191
           S D   SHKA+A+K   L + LLSD   +  K +GV       G L  R T+I+D +G +
Sbjct: 63  SVDSPFSHKAWAEKEGGLNFPLLSDPDGEFAKAYGVLIEKSAGGGLAARATFIIDPDGKI 122

Query: 192 QLIYNNQFQPEKHIDETLK 210
           + +      P     E L 
Sbjct: 123 RYVEVE-PLPTGRNAEELL 140

PRXs are thiol-specific antioxidant (TSA) proteins also known as TRX peroxidases and alkyl hydroperoxide reductase C22 (AhpC) proteins. They confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either TRX, glutathione, trypanothione and AhpF. They are distinct from other peroxidases in that they have no cofactors such as metals or prosthetic groups. The first step of catalysis, common to all PRXs, is the nucleophilic attack by the catalytic cysteine (also known as the peroxidatic cysteine) on the peroxide leading to cleavage of the oxygen-oxygen bond and the formation of a cysteine sulfenic acid intermediate. The second step of the reaction, the resolution of the intermediate, distinguishes the different types of PRXs. The presence or absence of a second cysteine (the resolving cysteine) classifies PRXs as either belonging to the 2-cys or 1-cys type. The resolving cysteine of 2-cys PRXs is either on the same chain (atypical) or on the second chain (typical) of a functional homodimer. Structural and motif analysis of this growing family supports the need for a new classification system. The peroxidase activity of PRXs is regulated in vivo by irreversible cysteine over-oxidation into a sulfinic acid, phosphorylation and limited proteolysis. Length = 140

>gnl|CDD|216002 pfam00578, AhpC-TSA, AhpC/TSA family

 Score =  160 bits (407), Expect = 7e-51
 Identities = 58/124 (46%), Positives = 78/124 (62%), Gaps = 1/124 (0%)

Query: 71  GQAPPSFTLKDQEGRNVSLSKFKGKPVVVYFYPADETPGCTKQACAFRDSYEKFKKAGAE 130
           G   P F L D +G+ VSLS +KGK VV++FYP D TP CT +  A  D YE+FKK G E
Sbjct: 2   GDKAPDFELPDLDGKEVSLSDYKGKWVVLFFYPKDFTPVCTTELPALADLYEEFKKLGVE 61

Query: 131 VIGISGDDSSSHKAFAKKYRLPYTLLSDEGNKVRKEWGVPADFFGSLPGRQTYILDKNGV 190
           V+G+S D   SHK FA+K  LP+ LLSD   +V K +GV  +    L  R T+++D +G 
Sbjct: 62  VLGVSVDSPESHKKFAEKLGLPFPLLSDPDGEVAKAYGV-LNEEEGLALRTTFVIDPDGK 120

Query: 191 VQLI 194
           ++ I
Sbjct: 121 IRYI 124

This family contains proteins related to alkyl hydroperoxide reductase (AhpC) and thiol specific antioxidant (TSA). Length = 124

>gnl|CDD|239316 cd03018, PRX_AhpE_like, Peroxiredoxin (PRX) family, AhpE-like subfamily; composed of proteins similar to Mycobacterium tuberculosis AhpE

 Score =  127 bits (321), Expect = 2e-37
 Identities = 55/127 (43%), Positives = 79/127 (62%), Gaps = 4/127 (3%)

Query: 68  VSKGQAPPSFTLKDQEGRNVSLSKFKG-KPVVVYFYPADETPGCTKQACAFRDSYEKFKK 126
           +  G   P F L DQ G+ V LS+F+G KPVV+ F+P   TP CTK+ CA RDS E F+ 
Sbjct: 1   LEVGDKAPDFELPDQNGQEVRLSEFRGRKPVVLVFFPLAFTPVCTKELCALRDSLELFEA 60

Query: 127 AGAEVIGISGDDSSSHKAFAKKYRLPYTLLSDEGNK--VRKEWGVPADFFGSLPGRQTYI 184
           AGAEV+GIS D   S +A+A++  L + LLSD      V K +GV  +  G +  R  ++
Sbjct: 61  AGAEVLGISVDSPFSLRAWAEENGLTFPLLSDFWPHGEVAKAYGVFDEDLG-VAERAVFV 119

Query: 185 LDKNGVV 191
           +D++G++
Sbjct: 120 IDRDGII 126

AhpE is described as a 1-cys PRX because of the absence of a resolving cysteine. The structure and sequence of AhpE, however, show greater similarity to 2-cys PRXs than 1-cys PRXs. PRXs are thiol-specific antioxidant (TSA) proteins that confer a protective role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. The first step of catalysis is the nucleophilic attack by the peroxidatic cysteine on the peroxide leading to the formation of a cysteine sulfenic acid intermediate. The absence of a resolving cysteine suggests that functional AhpE is regenerated by an external reductant. The solution behavior and crystal structure of AhpE show that it forms dimers and octamers. Length = 149

>gnl|CDD|181857 PRK09437, bcp, thioredoxin-dependent thiol peroxidase; Reviewed

 Score =  125 bits (316), Expect = 1e-36
 Identities = 61/149 (40%), Positives = 92/149 (61%), Gaps = 6/149 (4%)

Query: 71  GQAPPSFTLKDQEGRNVSLSKFKGKPVVVYFYPADETPGCTKQACAFRDSYEKFKKAGAE 130
           G   P F+L DQ+G  VSL+ F+G+ V+VYFYP   TPGCT QAC  RD+ ++ KKAG  
Sbjct: 7   GDIAPKFSLPDQDGEQVSLTDFQGQRVLVYFYPKAMTPGCTVQACGLRDNMDELKKAGVV 66

Query: 131 VIGISGDDSSSHKAFAKKYRLPYTLLSDEGNKVRKEWGV--PADFFG-SLPG--RQTYIL 185
           V+GIS D       FA+K  L +TLLSDE ++V +++GV     F G +  G  R ++++
Sbjct: 67  VLGISTDKPEKLSRFAEKELLNFTLLSDEDHQVAEQFGVWGEKKFMGKTYDGIHRISFLI 126

Query: 186 DKNGVVQLIYNNQFQPEKHIDETLKFLQS 214
           D +G ++ +++  F+   H D  L +L+ 
Sbjct: 127 DADGKIEHVFDK-FKTSNHHDVVLDYLKE 154

Length = 154

>gnl|CDD|223527 COG0450, AhpC, Peroxiredoxin [Posttranslational modification, protein turnover, chaperones]

 Score =  103 bits (259), Expect = 1e-27
 Identities = 51/156 (32%), Positives = 84/156 (53%), Gaps = 14/156 (8%)

Query: 71  GQAPPSFT----LKDQEGRNVSLSKFKGKPVVVYFYPADETPGCTKQACAFRDSYEKFKK 126
           G+  P FT    L  +    ++LS + GK VV++FYPAD T  C  +  AF   YE+F+K
Sbjct: 6   GKKAPDFTANAVLGGEIFEEITLSDYYGKWVVLFFYPADFTFVCPTEIIAFAKRYEEFQK 65

Query: 127 AGAEVIGISGDDSSSHKAFAKKYR-------LPYTLLSDEGNKVRKEWGV-PADFFGSLP 178
            G EVIG+S D   SHKA+    R       + + +++D   ++ + +GV   +    L 
Sbjct: 66  RGVEVIGVSTDSVFSHKAWKATIREAGGIGKIKFPMIADPKGEIARAYGVLHPE--EGLA 123

Query: 179 GRQTYILDKNGVVQLIYNNQFQPEKHIDETLKFLQS 214
            R T+I+D +GV++ I  N     +++DE L+ + +
Sbjct: 124 LRGTFIIDPDGVIRHILVNPLTIGRNVDEILRVIDA 159

Length = 194

>gnl|CDD|239313 cd03015, PRX_Typ2cys, Peroxiredoxin (PRX) family, Typical 2-Cys PRX subfamily; PRXs are thiol-specific antioxidant (TSA) proteins, which confer a protective role in cells through its peroxidase activity by reducing hydrogen peroxide, peroxynitrite, and organic hydroperoxides

 Score = 96.8 bits (242), Expect = 2e-25
 Identities = 54/156 (34%), Positives = 84/156 (53%), Gaps = 16/156 (10%)

Query: 71  GQAPPSFT----LKDQEGRNVSLSKFKGKPVVVYFYPADETPGCTKQACAFRDSYEKFKK 126
           G+  P F     + + E + +SLS +KGK VV++FYP D T  C  +  AF D YE+FKK
Sbjct: 2   GKKAPDFKATAVVPNGEFKEISLSDYKGKWVVLFFYPLDFTFVCPTEIIAFSDRYEEFKK 61

Query: 127 AGAEVIGISGDDSSSHKAFAKKYR-------LPYTLLSDEGNKVRKEWGV--PADFFGSL 177
             AEV+G+S D   SH A+    R       + + LL+D   K+ +++GV    +    +
Sbjct: 62  LNAEVLGVSTDSHFSHLAWRNTPRKEGGLGKINFPLLADPKKKISRDYGVLDEEE---GV 118

Query: 178 PGRQTYILDKNGVVQLIYNNQFQPEKHIDETLKFLQ 213
             R T+I+D  G+++ I  N     + +DETL+ L 
Sbjct: 119 ALRGTFIIDPEGIIRHITVNDLPVGRSVDETLRVLD 154

The functional unit of typical 2-cys PRX is a homodimer. A unique intermolecular redox-active disulfide center is utilized for its activity. Upon reaction with peroxides, its peroxidatic cysteine is oxidized into a sulfenic acid intermediate which is resolved by bonding with the resolving cysteine from the other subunit of the homodimer. This intermolecular disulfide bond is then reduced by thioredoxin, tryparedoxin or AhpF. Typical 2-cys PRXs, like 1-cys PRXs, form decamers which are stabilized by reduction of the active site cysteine. Typical 2-cys PRX interacts through beta strands at one edge of the monomer (B-type interface) to form the functional homodimer, and uses an A-type interface (similar to the dimeric interface in atypical 2-cys PRX and PRX5) at the opposite end of the monomer to form the stable decameric (pentamer of dimers) structure. Length = 173

>gnl|CDD|219888 pfam08534, Redoxin, Redoxin

 Score = 93.6 bits (233), Expect = 2e-24
 Identities = 38/124 (30%), Positives = 60/124 (48%), Gaps = 5/124 (4%)

Query: 71  GQAPPSFTLKD--QEGRNVSLSKFKGKPVVVYFYPADETPGCTKQACAFRDSYEKFKKAG 128
           G   P FTL D   +G+ VSLS FKGK VV+ F+P    P C+ +        + +K  G
Sbjct: 2   GDKAPDFTLPDVALDGKTVSLSDFKGKKVVLNFWPGAFCPTCSAEHPYLEKLSKLYKAKG 61

Query: 129 AEVIGI-SGDDSSSHKAFAKKYRLPYTLLSDEGNKVRKEWGVPADFFGSLPGRQTYILDK 187
            +V+ + + +D      F  K  L Y +L+D      K +G+  D     P    +++D+
Sbjct: 62  VDVVAVNASNDPFFVMNFWAKEGLKYPVLADRDGAFTKAYGLTEDAGLRTPR--YFLIDE 119

Query: 188 NGVV 191
           +G V
Sbjct: 120 DGKV 123

This family of redoxins includes peroxiredoxin, thioredoxin and glutaredoxin proteins. Length = 142

>gnl|CDD|239264 cd02966, TlpA_like_family, TlpA-like family; composed of TlpA, ResA, DsbE and similar proteins

 Score = 86.9 bits (216), Expect = 3e-22
 Identities = 40/117 (34%), Positives = 64/117 (54%), Gaps = 10/117 (8%)

Query: 77  FTLKDQEGRNVSLSKFKGKPVVVYFYPADETPGCTKQACAFRDSYEKFKKAGAEVIGISG 136
           F+L D +G+ VSLS  KGK V+V F+ A   P C  +        +++K  G EV+G++ 
Sbjct: 2   FSLPDLDGKPVSLSDLKGKVVLVNFW-ASWCPPCRAEMPELEALAKEYKDDGVEVVGVNV 60

Query: 137 DDSSSH--KAFAKKYRLPYTLLSDEGNKVRKEWGVPADFFGSLPGRQTYILDKNGVV 191
           DD      KAF KKY + + +L D   ++ K +GV       LP   T+++D++G +
Sbjct: 61  DDDDPAAVKAFLKKYGITFPVLLDPDGELAKAYGVRG-----LPT--TFLIDRDGRI 110

TlpA, ResA and DsbE are bacterial protein disulfide reductases with important roles in cytochrome maturation. They are membrane-anchored proteins with a soluble TRX domain containing a CXXC motif located in the periplasm. The TRX domains of this family contain an insert, approximately 25 residues in length, which correspond to an extra alpha helix and a beta strand when compared with TRX. TlpA catalyzes an essential reaction in the biogenesis of cytochrome aa3, while ResA and DsbE are essential proteins in cytochrome c maturation. Also included in this family are proteins containing a TlpA-like TRX domain with domain architectures similar to E. coli DipZ protein, and the N-terminal TRX domain of PilB protein from Neisseria which acts as a disulfide reductase that can recylce methionine sulfoxide reductases. Length = 116

>gnl|CDD|106159 PRK13190, PRK13190, putative peroxiredoxin; Provisional

 Score = 72.6 bits (178), Expect = 7e-16
 Identities = 48/153 (31%), Positives = 87/153 (56%), Gaps = 8/153 (5%)

Query: 68  VSKGQAPPSFTLKDQEGRNVSLSKFKGKPVVVYFYPADETPGCTKQACAFRDSYEKFKKA 127
           V  GQ  P FT+   +G  + LSK+KGK V+++ +PAD TP CT +  AF   YE FKK 
Sbjct: 2   VKLGQKAPDFTVNTTKG-PIDLSKYKGKWVLLFSHPADFTPVCTTEFIAFSRRYEDFKKL 60

Query: 128 GAEVIGISGDDSSSHKAFAK----KY--RLPYTLLSDEGNKVRKEWGVPADFFGSLPGRQ 181
           G E++G+S D   SH A+ +    ++  ++P+ +++D   ++ +E+ +  D       R 
Sbjct: 61  GVELVGLSVDSIYSHIAWLRDIEERFGIKIPFPVIADIDKELAREYNL-IDENSGATVRG 119

Query: 182 TYILDKNGVVQLIYNNQFQPEKHIDETLKFLQS 214
            +I+D N +V+ +     +  ++IDE ++  ++
Sbjct: 120 VFIIDPNQIVRWMIYYPAETGRNIDEIIRITKA 152

Length = 202

>gnl|CDD|239314 cd03016, PRX_1cys, Peroxiredoxin (PRX) family, 1-cys PRX subfamily; composed of PRXs containing only one conserved cysteine, which serves as the peroxidatic cysteine

 Score = 71.0 bits (175), Expect = 3e-15
 Identities = 35/128 (27%), Positives = 60/128 (46%), Gaps = 9/128 (7%)

Query: 75  PSFTLKDQEGRNVSLSKFKGKPVVVYF-YPADETPGCTKQACAFRDSYEKFKKAGAEVIG 133
           P+F      G  +    + G    + F +PAD TP CT +  AF     +FKK   ++IG
Sbjct: 6   PNFEADTTHGP-IKFHDYLGDSWGILFSHPADFTPVCTTELGAFAKLAPEFKKRNVKLIG 64

Query: 134 ISGDDSSSHKAFAK------KYRLPYTLLSDEGNKVRKEWG-VPADFFGSLPGRQTYILD 186
           +S D   SH  + +         +P+ +++D   +V K  G +  D   +L  R  +I+D
Sbjct: 65  LSVDSVESHIKWIEDIEEYTGVEIPFPIIADPDREVAKLLGMIDPDAGSTLTVRAVFIID 124

Query: 187 KNGVVQLI 194
            +  ++LI
Sbjct: 125 PDKKIRLI 132

They are homodimeric thiol-specific antioxidant (TSA) proteins that confer a protective role in cells by reducing and detoxifying hydrogen peroxide, peroxynitrite, and organic hydroperoxides. As with all other PRXs, a cysteine sulfenic acid intermediate is formed upon reaction of 1-cys PRX with its substrates. Having no resolving cysteine, the oxidized enzyme is resolved by an external small-molecule or protein reductant such as thioredoxin or glutaredoxin. Similar to typical 2-cys PRX, 1-cys PRX forms a functional dimeric unit with a B-type interface, as well as a decameric structure which is stabilized in the reduced form of the enzyme. Other oligomeric forms, tetramers and hexamers, have also been reported. Mammalian 1-cys PRX is localized cellularly in the cytosol and is expressed at high levels in brain, eye, testes and lung. The seed-specific plant 1-cys PRXs protect tissues from reactive oxygen species during desiccation and are also called rehydrins. Length = 203

>gnl|CDD|140280 PTZ00253, PTZ00253, tryparedoxin peroxidase; Provisional

 Score = 67.6 bits (165), Expect = 5e-14
 Identities = 38/137 (27%), Positives = 72/137 (52%), Gaps = 8/137 (5%)

Query: 85  RNVSLSKFKGKPVVVYFYPADETPGCTKQACAFRDSYEKFKKAGAEVIGISGDDSSSHKA 144
           + +SLS +KGK VV++FYP D T  C  +   F DS ++F +   EV+  S D   +H  
Sbjct: 27  KKISLSSYKGKWVVLFFYPLDFTFVCPTEIIQFSDSVKRFNELNCEVLACSMDSEYAHLQ 86

Query: 145 FAKKYR-------LPYTLLSDEGNKVRKEWGVPADFFGSLPGRQTYILDKNGVVQLIYNN 197
           +  + R       +   +L+D+   + + +GV  +  G +  R  +I+D  G+++ I  N
Sbjct: 87  WTLQERKKGGLGTMAIPMLADKTKSIARSYGVLEEEQG-VAYRGLFIIDPKGMLRQITVN 145

Query: 198 QFQPEKHIDETLKFLQS 214
                ++++E L+ L++
Sbjct: 146 DMPVGRNVEEVLRLLEA 162

Length = 199

>gnl|CDD|184962 PRK15000, PRK15000, peroxidase; Provisional

 Score = 66.6 bits (162), Expect = 1e-13
 Identities = 43/153 (28%), Positives = 74/153 (48%), Gaps = 14/153 (9%)

Query: 75  PSFTLKDQEGRNVSLSKFK------GKPVVVYFYPADETPGCTKQACAFRDSYEKFKKAG 128
           P FT     G    + KF       GK  V++F+P D T  C  +  AF   YE+F+K G
Sbjct: 9   PDFTAAAVLGSGEIVDKFNFKQHTNGKTTVLFFWPMDFTFVCPSELIAFDKRYEEFQKRG 68

Query: 129 AEVIGISGDDSSSHKAFAKKY-------RLPYTLLSDEGNKVRKEWGVPADFFGSLPGRQ 181
            EV+G+S D    H A+            + Y +++D   +++K +G+     G +  R 
Sbjct: 69  VEVVGVSFDSEFVHNAWRNTPVDKGGIGPVKYAMVADVKREIQKAYGIEHPDEG-VALRG 127

Query: 182 TYILDKNGVVQLIYNNQFQPEKHIDETLKFLQS 214
           ++++D NG+V+    N     ++IDE L+ + +
Sbjct: 128 SFLIDANGIVRHQVVNDLPLGRNIDEMLRMVDA 160

Length = 200

>gnl|CDD|179545 PRK03147, PRK03147, thiol-disulfide oxidoreductase; Provisional

 Score = 65.4 bits (160), Expect = 2e-13
 Identities = 43/130 (33%), Positives = 71/130 (54%), Gaps = 10/130 (7%)

Query: 67  KVSKGQAPPSFTLKDQEGRNVSLSKFKGKPVVVYFYPADETPGCTKQACAFRDSYEKFKK 126
           KV  G+  P+F L D EG+ + L   KGK V + F+       C K+     + Y K+K+
Sbjct: 34  KVQVGKEAPNFVLTDLEGKKIELKDLKGKGVFLNFW-GTWCKPCEKEMPYMNELYPKYKE 92

Query: 127 AGAEVIGISGDDSS-SHKAFAKKYRLPYTLLSDEGNKVRKEWGVPADFFGSLPGRQTYIL 185
            G E+I ++ D++  + K F  +Y L + +  D+G +V   +GV     G LP   T+++
Sbjct: 93  KGVEIIAVNVDETELAVKNFVNRYGLTFPVAIDKGRQVIDAYGV-----GPLP--TTFLI 145

Query: 186 DKNG-VVQLI 194
           DK+G VV++I
Sbjct: 146 DKDGKVVKVI 155

Length = 173

>gnl|CDD|239268 cd02970, PRX_like2, Peroxiredoxin (PRX)-like 2 family; hypothetical proteins that show sequence similarity to PRXs

 Score = 64.7 bits (158), Expect = 2e-13
 Identities = 32/151 (21%), Positives = 52/151 (34%), Gaps = 37/151 (24%)

Query: 75  PSFTLKDQEGRNVSLSKFKG-KPVVVYFY-----PADETPGCTKQACAFRDSYEKFKKAG 128
           P F L D  G  V+LS   G  PVVV FY     P      C +   A      +    G
Sbjct: 3   PDFELPDAGGETVTLSALLGEGPVVVVFYRGFGCPF-----CREYLRALSKLLPELDALG 57

Query: 129 AEVIGISGDDSSSHKAFAKKYRLPYTLLSDEGNKVRKEWGV------------------- 169
            E++ +  +     +AF K   LP+ + +D   K+ +  G+                   
Sbjct: 58  VELVAVGPESPEKLEAFDKGKFLPFPVYADPDRKLYRALGLVRSLPWSNTPRALWKNAAI 117

Query: 170 -----PADFFGSLPGRQTYILDKNGVVQLIY 195
                       LPG   +++  +G +   +
Sbjct: 118 GFRGNDEGDGLQLPG--VFVIGPDGTILFAH 146

Members of this group contain a CXXC motif, similar to TRX. The second cysteine in the motif corresponds to the peroxidatic cysteine of PRX, however, these proteins do not contain the other two residues of the catalytic triad of PRX. PRXs confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. TRXs alter the redox state of target proteins by catalyzing the reduction of their disulfide bonds via the CXXC motif using reducing equivalents derived from either NADPH or ferredoxins. Length = 149

>gnl|CDD|106544 PRK13599, PRK13599, putative peroxiredoxin; Provisional

 Score = 65.5 bits (159), Expect = 3e-13
 Identities = 40/150 (26%), Positives = 73/150 (48%), Gaps = 6/150 (4%)

Query: 71  GQAPPSFTLKDQEGRNVSLSKFKGKPVVVYFYPADETPGCTKQACAFRDSYEKFKKAGAE 130
           G+  PS  +   +G       + GK  V++ +PAD TP CT +   F      FK+   E
Sbjct: 5   GEKFPSMEVVTTQGVKRLPEDYAGKWFVLFSHPADFTPVCTTEFVEFARKANDFKELNTE 64

Query: 131 VIGISGDDSSSHKAFAK------KYRLPYTLLSDEGNKVRKEWGVPADFFGSLPGRQTYI 184
           +IG+S D   SH  + +         +P+ +++D+  KV  + G+     G+   R  +I
Sbjct: 65  LIGLSVDQVFSHIKWVEWIKDNTNIAIPFPVIADDLGKVSNQLGMIHPGKGTNTVRAVFI 124

Query: 185 LDKNGVVQLIYNNQFQPEKHIDETLKFLQS 214
           +D  G ++LI     +  +++DE L+ L++
Sbjct: 125 VDDKGTIRLIMYYPQEVGRNVDEILRALKA 154

Length = 215

>gnl|CDD|183885 PRK13191, PRK13191, putative peroxiredoxin; Provisional

 Score = 64.1 bits (156), Expect = 1e-12
 Identities = 42/150 (28%), Positives = 74/150 (49%), Gaps = 6/150 (4%)

Query: 71  GQAPPSFTLKDQEGRNVSLSKFKGKPVVVYFYPADETPGCTKQACAFRDSYEKFKKAGAE 130
           G+  P   +    G+      +KG+  V++ +P D TP CT +  +F   YE+FKK   E
Sbjct: 10  GEKFPEMEVITTHGKIKLPDDYKGRWFVLFSHPGDFTPVCTTEFYSFAKKYEEFKKLNTE 69

Query: 131 VIGISGDDSSSHKAFAK------KYRLPYTLLSDEGNKVRKEWGVPADFFGSLPGRQTYI 184
           +IG+S D + SH  +        K  +P+ +++D    V K  G+      +   R  +I
Sbjct: 70  LIGLSVDSNISHIEWVMWIEKNLKVEVPFPIIADPMGNVAKRLGMIHAESSTATVRAVFI 129

Query: 185 LDKNGVVQLIYNNQFQPEKHIDETLKFLQS 214
           +D  G V+LI     +  ++IDE L+ +++
Sbjct: 130 VDDKGTVRLILYYPMEIGRNIDEILRAIRA 159

Length = 215

>gnl|CDD|211789 TIGR03137, AhpC, peroxiredoxin

 Score = 62.8 bits (153), Expect = 2e-12
 Identities = 37/112 (33%), Positives = 56/112 (50%), Gaps = 5/112 (4%)

Query: 87  VSLSKFKGKPVVVYFYPADETPGCTKQACAFRDSYEKFKKAGAEVIGISGDDSSSHKAFA 146
           V+    KGK  V +FYPAD T  C  +     D+Y + KK G EV  +S D    HKA+ 
Sbjct: 24  VTDEDVKGKWSVFFFYPADFTFVCPTELEDLADNYAELKKLGVEVYSVSTDTHFVHKAWH 83

Query: 147 KKY----RLPYTLLSDEGNKVRKEWGVPADFFGSLPGRQTYILDKNGVVQLI 194
                  ++ Y +L D    + + +GV  +  G L  R T+++D  GV+Q +
Sbjct: 84  DTSEAIGKITYPMLGDPTGVLTRNFGVLIEEAG-LADRGTFVIDPEGVIQAV 134

This peroxiredoxin (AhpC, alkylhydroperoxide reductase subunit C) is one subunit of a two-subunit complex with subunit F(TIGR03140). Usually these are found as an apparent operon. The gene has been characterized in Bacteroides fragilis where it is important in oxidative stress defense. This gene contains two invariant cysteine residues, one near the N-terminus and one near the C-terminus, each followed immediately by a proline residue [Cellular processes, Detoxification, Cellular processes, Adaptations to atypical conditions]. Length = 187

>gnl|CDD|239267 cd02969, PRX_like1, Peroxiredoxin (PRX)-like 1 family; hypothetical proteins that show sequence similarity to PRXs

 Score = 61.9 bits (151), Expect = 4e-12
 Identities = 40/149 (26%), Positives = 63/149 (42%), Gaps = 41/149 (27%)

Query: 71  GQAPPSFTLKDQEGRNVSLSKF-KGKPVVVYFYPADETPGCTKQACAFRDSYEK------ 123
           G   P F+L D +G+  SL+ F  GK +VV F        C    C +  + E       
Sbjct: 1   GSPAPDFSLPDTDGKTYSLADFADGKALVVMFI-------CNH--CPYVKAIEDRLNRLA 51

Query: 124 --FKKAGAEVIGISGDDSSSH--------KAFAKKYRLPYTLLSDEGNKVRKEWGV---P 170
             +   G  V+ I+ +D  ++        KA AK++  P+  L DE  +V K +G    P
Sbjct: 52  KEYGAKGVAVVAINSNDIEAYPEDSPENMKAKAKEHGYPFPYLLDETQEVAKAYGAACTP 111

Query: 171 ADFFGSLPGRQTYILDKNGVVQLIYNNQF 199
            DFF         + D +G  +L+Y  + 
Sbjct: 112 -DFF---------LFDPDG--KLVYRGRI 128

Members of this group contain a conserved cysteine that aligns to the first cysteine in the CXXC motif of TRX. This does not correspond to the peroxidatic cysteine found in PRXs, which aligns to the second cysteine in the CXXC motif of TRX. In addition, these proteins do not contain the other two conserved residues of the catalytic triad of PRX. PRXs confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. Length = 171

>gnl|CDD|237297 PRK13189, PRK13189, peroxiredoxin; Provisional

 Score = 62.3 bits (152), Expect = 5e-12
 Identities = 36/127 (28%), Positives = 70/127 (55%), Gaps = 8/127 (6%)

Query: 75  PSFTLKDQEGRNVSLSK-FKGKPVVVYFYPADETPGCTKQACAFRDSYEKFKKAGAEVIG 133
           P F +K   G  + L   +KGK  V++ +PAD TP CT +  AF+  Y++F++   E+IG
Sbjct: 16  PEFEVKTTHGP-IKLPDDYKGKWFVLFSHPADFTPVCTTEFVAFQKRYDEFRELNTELIG 74

Query: 134 ISGDDSSSHKAFAKKYR------LPYTLLSDEGNKVRKEWGVPADFFGSLPGRQTYILDK 187
           +S D   SH  + +  +      + + +++D+  ++ K+ G+ +   G+   R  +I+D 
Sbjct: 75  LSIDQVFSHIKWVEWIKEKLGVEIEFPIIADDRGEIAKKLGMISPGKGTNTVRAVFIIDP 134

Query: 188 NGVVQLI 194
            G+++ I
Sbjct: 135 KGIIRAI 141

Length = 222

>gnl|CDD|182423 PRK10382, PRK10382, alkyl hydroperoxide reductase subunit C; Provisional

 Score = 55.4 bits (133), Expect = 1e-09
 Identities = 33/120 (27%), Positives = 58/120 (48%), Gaps = 5/120 (4%)

Query: 79  LKDQEGRNVSLSKFKGKPVVVYFYPADETPGCTKQACAFRDSYEKFKKAGAEVIGISGDD 138
            K+ E   V+    +G+  V +FYPAD T  C  +     D YE+ +K G +V  +S D 
Sbjct: 16  FKNGEFIEVTEKDTEGRWSVFFFYPADFTFVCPTELGDVADHYEELQKLGVDVYSVSTDT 75

Query: 139 SSSHKAFAKKY----RLPYTLLSDEGNKVRKEWGVPADFFGSLPGRQTYILDKNGVVQLI 194
             +HKA+        ++ Y ++ D    + + +    +  G L  R T+++D  G++Q I
Sbjct: 76  HFTHKAWHSSSETIAKIKYAMIGDPTGALTRNFDNMREDEG-LADRATFVVDPQGIIQAI 134

Length = 187

>gnl|CDD|222448 pfam13905, Thioredoxin_8, Thioredoxin-like

 Score = 46.6 bits (111), Expect = 3e-07
 Identities = 31/102 (30%), Positives = 49/102 (48%), Gaps = 12/102 (11%)

Query: 94  GKPVVVYFYPADETPGCTKQACAFRDSYEKFKKAGAEVIGISGD-DSSSHKAFAKKYRLP 152
           GK V++YF+ A   P C       ++ YEK KK   E++ +S D D    K + KK    
Sbjct: 1   GKVVLLYFW-ASWCPPCRAFTPELKELYEKLKKPKVEIVYVSLDRDEEEWKKYLKKMPKD 59

Query: 153 YTLL---SDEGNKVRKEWGVPADFFGSLPGRQTYILDKNGVV 191
           +  +     E N++ + +GV A     +P     +LDK+G V
Sbjct: 60  WLNVPFGDKERNELLRLYGVKA-----IPT--LVLLDKDGRV 94

Thioredoxins are small enzymes that participate in redox reactions, via the reversible oxidation of an active centre disulfide bond. Length = 94

>gnl|CDD|239312 cd03014, PRX_Atyp2cys, Peroxiredoxin (PRX) family, Atypical 2-cys PRX subfamily; composed of PRXs containing peroxidatic and resolving cysteines, similar to the homodimeric thiol specific antioxidant (TSA) protein also known as TRX-dependent thiol peroxidase (Tpx)

 Score = 47.6 bits (114), Expect = 3e-07
 Identities = 38/123 (30%), Positives = 54/123 (43%), Gaps = 5/123 (4%)

Query: 71  GQAPPSFTLKDQEGRNVSLSKFKGKPVVVYFYPADETPGCTKQACAFRDSYEKFKKAGAE 130
           G   P FTL   +   VSL+ F GK  V+  +P+ +TP C  Q   F     K       
Sbjct: 3   GDKAPDFTLVTSDLSEVSLADFAGKVKVISVFPSIDTPVCATQTKRFNKEAAKLD--NTV 60

Query: 131 VIGISGDDSSSHKAFAKKYRLP-YTLLSDEGNKV-RKEWGVPADFFGSLPGRQTYILDKN 188
           V+ IS D   + K +     +   T LSD  +    K +GV     G L  R  +++D+N
Sbjct: 61  VLTISADLPFAQKRWCGAEGVDNVTTLSDFRDHSFGKAYGVLIKDLG-LLARAVFVIDEN 119

Query: 189 GVV 191
           G V
Sbjct: 120 GKV 122

Tpx is a bacterial periplasmic peroxidase which differs from other PRXs in that it shows substrate specificity toward alkyl hydroperoxides over hydrogen peroxide. As with all other PRXs, the peroxidatic cysteine (N-terminal) of Tpx is oxidized into a sulfenic acid intermediate upon reaction with peroxides. Tpx is able to resolve this intermediate by forming an intramolecular disulfide bond with a conserved C-terminal cysteine (the resolving cysteine), which can then be reduced by thioredoxin. This differs from the typical 2-cys PRX which resolves the oxidized cysteine by forming an intermolecular disulfide bond with the resolving cysteine from the other subunit of the homodimer. Atypical 2-cys PRX homodimers have a loop-based interface (A-type for alternate), in contrast with the B-type interface of typical 2-cys and 1-cys PRXs. Length = 143

>gnl|CDD|239266 cd02968, SCO, SCO (an acronym for Synthesis of Cytochrome c Oxidase) family; composed of proteins similar to Sco1, a membrane-anchored protein possessing a soluble domain with a TRX fold

 Score = 46.4 bits (111), Expect = 8e-07
 Identities = 19/28 (67%), Positives = 22/28 (78%)

Query: 74  PPSFTLKDQEGRNVSLSKFKGKPVVVYF 101
            P FTL DQ+GR V+LS  KGKPV+VYF
Sbjct: 2   GPDFTLTDQDGRPVTLSDLKGKPVLVYF 29

Members of this family are required for the proper assembly of cytochrome c oxidase (COX). They contain a metal binding motif, typically CXXXC, which is located in a flexible loop. COX, the terminal enzyme in the respiratory chain, is imbedded in the inner mitochondrial membrane of all eukaryotes and in the plasma membrane of some prokaryotes. It is composed of two subunits, COX I and COX II. It has been proposed that Sco1 specifically delivers copper to the CuA site, a dinuclear copper center, of the COX II subunit. Mutations in human Sco1 and Sco2 cause fatal infantile hepatoencephalomyopathy and cardioencephalomyopathy, respectively. Both disorders are associated with severe COX deficiency in affected tissues. More recently, it has been argued that the redox sensitivity of the copper binding properties of Sco1 implies that it participates in signaling events rather than functioning as a chaperone that transfers copper to COX II. Length = 142

>gnl|CDD|178021 PLN02399, PLN02399, phospholipid hydroperoxide glutathione peroxidase

 Score = 47.2 bits (112), Expect = 1e-06
 Identities = 38/136 (27%), Positives = 62/136 (45%), Gaps = 7/136 (5%)

Query: 3   ASLNLPKHTLPSF-LPTQTPRTPPSQSLAIPSKSSS--QSQFFGLRFSFSSNLPIPSSTS 59
            SL     +  SF     +   PPS +  +PS  SS   S+   L   FS   P      
Sbjct: 2   VSLTTSSSSYASFKTVFNSSPPPPSMAFLVPSLKSSTGISKSAFLSNGFSLKSPNSPGFL 61

Query: 60  FKT---SISAKVSKGQAPPSFTLKDQEGRNVSLSKFKGKPVVVYFYPADETPGCTKQACA 116
            K+    + A+ +  ++   FT+KD +G++V+LSKFKGK +++    A +    +     
Sbjct: 62  SKSRSFGVYARAATEKSVHDFTVKDIDGKDVALSKFKGKVLLI-VNVASKCGLTSSNYSE 120

Query: 117 FRDSYEKFKKAGAEVI 132
               YEK+K  G E++
Sbjct: 121 LSHLYEKYKTQGFEIL 136

Length = 236

>gnl|CDD|173427 PTZ00137, PTZ00137, 2-Cys peroxiredoxin; Provisional

 Score = 44.9 bits (106), Expect = 8e-06
 Identities = 37/126 (29%), Positives = 62/126 (49%), Gaps = 9/126 (7%)

Query: 92  FKGKPVVVYFYPADETPGCTKQACAFRDSYEKFKKAGAEVIGISGDDSSSHKAFAKK--- 148
           FK    ++ FYP D T  C  +   F +  ++F++ G +V+G+S D   SHKA+ +    
Sbjct: 96  FKDSYGLLVFYPLDFTFVCPSELLGFSERLKEFEERGVKVLGVSVDSPFSHKAWKELDVR 155

Query: 149 ----YRLPYTLLSDEGNKVRKEWGVPADFFGSLPGRQTYILDKNGVVQLIYNNQFQPEKH 204
                 L + L SD   +V K +G+  D       R + ++DK GVV+ +        + 
Sbjct: 156 QGGVSPLKFPLFSDISREVSKSFGLLRD--EGFSHRASVLVDKAGVVKHVAVYDLGLGRS 213

Query: 205 IDETLK 210
           +DETL+
Sbjct: 214 VDETLR 219

Length = 261

>gnl|CDD|239308 cd03010, TlpA_like_DsbE, TlpA-like family, DsbE (also known as CcmG and CycY) subfamily; DsbE is a membrane-anchored, periplasmic TRX-like reductase containing a CXXC motif that specifically donates reducing equivalents to apocytochrome c via CcmH, another cytochrome c maturation (Ccm) factor with a redox active CXXC motif

 Score = 42.9 bits (102), Expect = 1e-05
 Identities = 26/130 (20%), Positives = 53/130 (40%), Gaps = 33/130 (25%)

Query: 75  PSFTLKDQEGRNVSLSK--FKGKPVVVYFYP------ADETPGCTKQACAFRDSYEKFKK 126
           P+F+L    G + +L+    KGKP ++  +        +E P     A          ++
Sbjct: 4   PAFSLPALPGPDKTLTSADLKGKPYLLNVWASWCAPCREEHPVLMALA----------RQ 53

Query: 127 AGAEVIGIS-GDDSSSHKAFAKKYRLPYTL-LSDEGNKVRKEWGV---PADFFGSLPGRQ 181
               + GI+  D+  +  A+  ++  PY     D   +V  + GV   P          +
Sbjct: 54  GRVPIYGINYKDNPENALAWLARHGNPYAAVGFDPDGRVGIDLGVYGVP----------E 103

Query: 182 TYILDKNGVV 191
           T+++D +G++
Sbjct: 104 TFLIDGDGII 113

Assembly of cytochrome c requires the ligation of heme to reduced thiols of the apocytochrome. In bacteria, this assembly occurs in the periplasm. The reductase activity of DsbE in the oxidizing environment of the periplasm is crucial in the maturation of cytochrome c. Length = 127

>gnl|CDD|239309 cd03011, TlpA_like_ScsD_MtbDsbE, TlpA-like family, suppressor for copper sensitivity D protein (ScsD) and actinobacterial DsbE homolog subfamily; composed of ScsD, the DsbE homolog of Mycobacterium tuberculosis (MtbDsbE) and similar proteins, all containing a redox-active CXXC motif

 Score = 42.3 bits (100), Expect = 2e-05
 Identities = 27/128 (21%), Positives = 41/128 (32%), Gaps = 31/128 (24%)

Query: 75  PSFTLKDQEGRNVSLSKFKGKPVVVYFYPADETPGCTKQAC--------AFRDSYEKFKK 126
           P FT    +G    L    GKPV+VYF+       C    C             Y     
Sbjct: 1   PLFTATTLDGEQFDLESLSGKPVLVYFW----ATWCP--VCRFTSPTVNQLAADY----- 49

Query: 127 AGAEVIGISGDDSSSHK--AFAKKYRLPYTLLSDEGNKVRKEWGVPADFFGSLPGRQTYI 184
               V+ ++           F +K    + +++D    +   WGV        P     I
Sbjct: 50  ---PVVSVALRSGDDGAVARFMQKKGYGFPVINDPDGVISARWGVSV-----TPA--IVI 99

Query: 185 LDKNGVVQ 192
           +D  G+V 
Sbjct: 100 VDPGGIVF 107

The Salmonella typhimurium ScsD is a thioredoxin-like protein which confers copper tolerance to copper-sensitive mutants of E. coli. MtbDsbE has been characterized as an oxidase in vitro, catalyzing the disulfide bond formation of substrates like hirudin. The reduced form of MtbDsbE is more stable than its oxidized form, consistent with an oxidase function. This is in contrast to the function of DsbE from gram-negative bacteria which is a specific reductase of apocytochrome c. Length = 123

>gnl|CDD|224988 COG2077, Tpx, Peroxiredoxin [Posttranslational modification, protein turnover, chaperones]

 Score = 42.3 bits (100), Expect = 3e-05
 Identities = 40/122 (32%), Positives = 59/122 (48%), Gaps = 8/122 (6%)

Query: 75  PSFTLKDQEGRNVSLSKFKGKPVVVYFYPADETPGCTKQACAFRDSYEKFKKAGAEVIGI 134
           P FTL  ++  +VSL+ F GK  V+  +P+ +TP C  Q   F +  E  K     V+ I
Sbjct: 25  PDFTLVGKDLNDVSLADFAGKKKVISVFPSIDTPVCATQVRKFNE--EAAKLGNTVVLCI 82

Query: 135 SGDDSSSHKAFAKKYRL-PYTLLSDEGNKVRKE-WGVPADFFGSLPG---RQTYILDKNG 189
           S D   + K F     +     LSD  ++   E +GV  +  G L G   R  ++LD+NG
Sbjct: 83  SMDLPFAQKRFCGAEGIENVITLSDFRDRAFGENYGVLIN-EGPLAGLLARAVFVLDENG 141

Query: 190 VV 191
            V
Sbjct: 142 KV 143

Length = 158

>gnl|CDD|223600 COG0526, TrxA, Thiol-disulfide isomerase and thioredoxins [Posttranslational modification, protein turnover, chaperones / Energy production and conversion]

 Score = 39.5 bits (91), Expect = 2e-04
 Identities = 28/112 (25%), Positives = 54/112 (48%), Gaps = 12/112 (10%)

Query: 71  GQAPPSFTLKDQEGRNVSLSKFKGKPVVVYFYPADETPGCTKQACAFRDSYEKFKKAGAE 130
           G+   + + ++ +G  +SLS+ KGKPV+V F+ A   P C  +A    +  E++     E
Sbjct: 9   GELATAASFEELDGAPLSLSELKGKPVLVDFW-APWCPPCRAEAPLLEELAEEYGG-DVE 66

Query: 131 VIGISGDDSSSHKAFAKKYR-----LPYTLLSDEGNKVRK---EWGVPADFF 174
           V+ ++ DD   +   A ++      +P  LL  +G +V +      +P +  
Sbjct: 67  VVAVNVDD--ENPDLAAEFGVAVRSIPTLLLFKDGKEVDRLVGGKVLPKEAL 116

Length = 127

>gnl|CDD|224910 COG1999, COG1999, Uncharacterized protein SCO1/SenC/PrrC, involved in biogenesis of respiratory and photosynthetic systems [General function prediction only]

 Score = 40.1 bits (94), Expect = 3e-04
 Identities = 12/29 (41%), Positives = 17/29 (58%)

Query: 73  APPSFTLKDQEGRNVSLSKFKGKPVVVYF 101
               F L DQ+G+  +L   KGKP +V+F
Sbjct: 46  IGGDFELTDQDGKPFTLKDLKGKPSLVFF 74

Length = 207

>gnl|CDD|239262 cd02964, TryX_like_family, Tryparedoxin (TryX)-like family; composed of TryX and related proteins including nucleoredoxin (NRX), rod-derived cone viability factor (RdCVF) and the nematode homolog described as a 16-kD class of TRX

 Score = 37.6 bits (88), Expect = 0.001
 Identities = 25/69 (36%), Positives = 33/69 (47%), Gaps = 10/69 (14%)

Query: 79  LKDQEGRNVSLSKFKGKPVVVYFYPADETPGC---TKQACAFRDSYEKFKKAGA--EVIG 133
           L D EG  V +S  +GK V +YF  A   P C   T +   F   YEK K+ G   E++ 
Sbjct: 3   LLDGEGV-VPVSALEGKTVGLYF-SASWCPPCRAFTPKLVEF---YEKLKEEGKNFEIVF 57

Query: 134 ISGDDSSSH 142
           +S D S   
Sbjct: 58  VSRDRSEES 66

Most members of this family, except RdCVF, are protein disulfide oxidoreductases containing an active site CXXC motif, similar to TRX. Length = 132

>gnl|CDD|179055 PRK00522, tpx, lipid hydroperoxide peroxidase; Provisional

 Score = 38.0 bits (89), Expect = 0.001
 Identities = 23/75 (30%), Positives = 32/75 (42%), Gaps = 12/75 (16%)

Query: 68  VSKGQAPPSFTLKDQEGRNVSLSKFKGKPVVVYFYPADETPGCTKQACAFRDSYEKFKKA 127
              G   P FTL   +  +VSL+ F GK  V+  +P+ +T  C            KF + 
Sbjct: 18  PQVGDKAPDFTLVANDLSDVSLADFAGKRKVLNIFPSIDTGVCATSV-------RKFNQE 70

Query: 128 GAE-----VIGISGD 137
            AE     V+ IS D
Sbjct: 71  AAELDNTVVLCISAD 85

Length = 167

>gnl|CDD|163625 cd07382, MPP_DR1281, Deinococcus radiodurans DR1281 and related proteins, metallophosphatase domain

 Score = 37.4 bits (88), Expect = 0.002
 Identities = 20/81 (24%), Positives = 36/81 (44%), Gaps = 17/81 (20%)

Query: 118 RDSYEKFKKAGAEVIGISGDDSSSHKAFAKKYRLPYTLLSDEGNKVRKEWGVPADFFGSL 177
               ++   AG +VI   G+    H  + KK  L +  + +E   +R     PA++    
Sbjct: 48  PKIAKELLSAGVDVI-TMGN----H-TWDKKEILDF--IDEEPRLLR-----PANYPPGT 94

Query: 178 PGRQTYILDKNG----VVQLI 194
           PGR   +++ NG    V+ L+
Sbjct: 95  PGRGYGVVEVNGKKIAVINLM 115

DR1281 is an uncharacterized Deinococcus radiodurans protein with a domain that belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is thought to allow for productive metal coordination. Length = 255

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	215
COG1225	157	Bcp Peroxiredoxin [Posttranslational modification,	99.98
PLN02399	236	phospholipid hydroperoxide glutathione peroxidase	99.97
PF08534	146	Redoxin: Redoxin; InterPro: IPR013740 This redoxin	99.97
PRK09437	154	bcp thioredoxin-dependent thiol peroxidase; Review	99.97
cd03018	149	PRX_AhpE_like Peroxiredoxin (PRX) family, AhpE-lik	99.96
TIGR03137	187	AhpC peroxiredoxin. This gene contains two invaria	99.96
cd03015	173	PRX_Typ2cys Peroxiredoxin (PRX) family, Typical 2-	99.96
PRK10382	187	alkyl hydroperoxide reductase subunit C; Provision	99.96
PRK13599	215	putative peroxiredoxin; Provisional	99.96
PF00578	124	AhpC-TSA: AhpC/TSA family; InterPro: IPR000866 Per	99.96
PRK00522	167	tpx lipid hydroperoxide peroxidase; Provisional	99.96
PRK13191	215	putative peroxiredoxin; Provisional	99.96
cd03017	140	PRX_BCP Peroxiredoxin (PRX) family, Bacterioferrit	99.96
PRK13190	202	putative peroxiredoxin; Provisional	99.96
PTZ00137	261	2-Cys peroxiredoxin; Provisional	99.95
cd03014	143	PRX_Atyp2cys Peroxiredoxin (PRX) family, Atypical	99.95
KOG0855	211	consensus Alkyl hydroperoxide reductase, thiol spe	99.95
PRK15000	200	peroxidase; Provisional	99.95
cd03016	203	PRX_1cys Peroxiredoxin (PRX) family, 1-cys PRX sub	99.95
PRK13189	222	peroxiredoxin; Provisional	99.95
PTZ00056	199	glutathione peroxidase; Provisional	99.95
PTZ00253	199	tryparedoxin peroxidase; Provisional	99.95
cd02971	140	PRX_family Peroxiredoxin (PRX) family; composed of	99.94
TIGR02540	153	gpx7 putative glutathione peroxidase Gpx7. This mo	99.94
PLN02412	167	probable glutathione peroxidase	99.94
cd00340	152	GSH_Peroxidase Glutathione (GSH) peroxidase family	99.94
PTZ00256	183	glutathione peroxidase; Provisional	99.94
PRK03147	173	thiol-disulfide oxidoreductase; Provisional	99.93
PRK15412	185	thiol:disulfide interchange protein DsbE; Provisio	99.93
COG0450	194	AhpC Peroxiredoxin [Posttranslational modification	99.93
cd02970	149	PRX_like2 Peroxiredoxin (PRX)-like 2 family; hypot	99.93
cd03013	155	PRX5_like Peroxiredoxin (PRX) family, PRX5-like su	99.93
TIGR02661	189	MauD methylamine dehydrogenase accessory protein M	99.93
cd02969	171	PRX_like1 Peroxiredoxin (PRX)-like 1 family; hypot	99.93
cd03012	126	TlpA_like_DipZ_like TlpA-like family, DipZ-like su	99.92
TIGR00385	173	dsbE periplasmic protein thiol:disulfide oxidoredu	99.92
cd03010	127	TlpA_like_DsbE TlpA-like family, DsbE (also known	99.92
cd02967	114	mauD Methylamine utilization (mau) D family; mauD	99.9
cd02968	142	SCO SCO (an acronym for Synthesis of Cytochrome c	99.9
PRK10606	183	btuE putative glutathione peroxidase; Provisional	99.9
PRK14018	521	trifunctional thioredoxin/methionine sulfoxide red	99.89
cd03008	146	TryX_like_RdCVF Tryparedoxin (TryX)-like family, R	99.89
TIGR01626	184	ytfJ_HI0045 conserved hypothetical protein YtfJ-fa	99.88
cd02966	116	TlpA_like_family TlpA-like family; composed of Tlp	99.88
cd03011	123	TlpA_like_ScsD_MtbDsbE TlpA-like family, suppresso	99.87
PLN02919	1057	haloacid dehalogenase-like hydrolase family protei	99.87
cd02964	132	TryX_like_family Tryparedoxin (TryX)-like family;	99.84
cd03009	131	TryX_like_TryX_NRX Tryparedoxin (TryX)-like family	99.84
PRK13728	181	conjugal transfer protein TrbB; Provisional	99.81
COG0386	162	BtuE Glutathione peroxidase [Posttranslational mod	99.81
PF13905	95	Thioredoxin_8: Thioredoxin-like; PDB: 1FG4_A 1I5G_	99.8
KOG0852	196	consensus Alkyl hydroperoxide reductase, thiol spe	99.77
KOG0854	224	consensus Alkyl hydroperoxide reductase, thiol spe	99.76
KOG1651	171	consensus Glutathione peroxidase [Posttranslationa	99.72
COG2077	158	Tpx Peroxiredoxin [Posttranslational modification,	99.69
PF02630	174	SCO1-SenC: SCO1/SenC; InterPro: IPR003782 This fam	99.68
TIGR02738	153	TrbB type-F conjugative transfer system pilin asse	99.67
cd02950	142	TxlA TRX-like protein A (TxlA) family; TxlA was or	99.63
COG1999	207	Uncharacterized protein SCO1/SenC/PrrC, involved i	99.62
cd02985	103	TRX_CDSP32 TRX family, chloroplastic drought-induc	99.52
KOG2501	157	consensus Thioredoxin, nucleoredoxin and related p	99.51
TIGR02740	271	TraF-like TraF-like protein. This protein is relat	99.47
KOG0910	150	consensus Thioredoxin-like protein [Posttranslatio	99.46
KOG0541	171	consensus Alkyl hydroperoxide reductase/peroxiredo	99.44
cd02999	100	PDI_a_ERp44_like PDIa family, endoplasmic reticulu	99.44
cd02963	111	TRX_DnaJ TRX domain, DnaJ domain containing protei	99.42
cd02951	125	SoxW SoxW family; SoxW is a bacterial periplasmic	99.42
KOG2792	280	consensus Putative cytochrome C oxidase assembly p	99.4
cd02948	102	TRX_NDPK TRX domain, TRX and NDP-kinase (NDPK) fus	99.4
cd02954	114	DIM1 Dim1 family; Dim1 is also referred to as U5 s	99.39
PF00255	108	GSHPx: Glutathione peroxidase; InterPro: IPR000889	99.38
cd02956	96	ybbN ybbN protein family; ybbN is a hypothetical p	99.38
cd02953	104	DsbDgamma DsbD gamma family; DsbD gamma is the C-t	99.33
COG0678	165	AHP1 Peroxiredoxin [Posttranslational modification	99.32
PRK09381	109	trxA thioredoxin; Provisional	99.28
cd02994	101	PDI_a_TMX PDIa family, TMX subfamily; composed of	99.26
PF13098	112	Thioredoxin_2: Thioredoxin-like domain; PDB: 1T3B_	99.25
cd03002	109	PDI_a_MPD1_like PDI family, MPD1-like subfamily; c	99.23
cd03003	101	PDI_a_ERdj5_N PDIa family, N-terminal ERdj5 subfam	99.23
PHA02278	103	thioredoxin-like protein	99.23
cd02993	109	PDI_a_APS_reductase PDIa family, 5'-Adenylylsulfat	99.22
PRK10996	139	thioredoxin 2; Provisional	99.22
PLN00410	142	U5 snRNP protein, DIM1 family; Provisional	99.21
KOG0907	106	consensus Thioredoxin [Posttranslational modificat	99.2
cd03004	104	PDI_a_ERdj5_C PDIa family, C-terminal ERdj5 subfam	99.2
COG3118	304	Thioredoxin domain-containing protein [Posttransla	99.18
cd03005	102	PDI_a_ERp46 PDIa family, endoplasmic reticulum pro	99.18
cd02949	97	TRX_NTR TRX domain, novel NADPH thioredoxin reduct	99.17
cd03000	104	PDI_a_TMX3 PDIa family, TMX3 subfamily; composed o	99.16
cd02997	104	PDI_a_PDIR PDIa family, PDIR subfamily; composed o	99.16
cd03006	113	PDI_a_EFP1_N PDIa family, N-terminal EFP1 subfamil	99.15
TIGR01295	122	PedC_BrcD bacteriocin transport accessory protein,	99.14
cd02984	97	TRX_PICOT TRX domain, PICOT (for PKC-interacting c	99.13
cd02959	117	ERp19 Endoplasmic reticulum protein 19 (ERp19) fam	99.12
PF00085	103	Thioredoxin: Thioredoxin; InterPro: IPR013766 Thio	99.12
cd02996	108	PDI_a_ERp44 PDIa family, endoplasmic reticulum pro	99.11
TIGR01126	102	pdi_dom protein disulfide-isomerase domain. This m	99.1
cd02986	114	DLP Dim1 family, Dim1-like protein (DLP) subfamily	99.1
cd02962	152	TMX2 TMX2 family; composed of proteins similar to	99.1
PF00837	237	T4_deiodinase: Iodothyronine deiodinase; InterPro:	99.07
cd02952	119	TRP14_like Human TRX-related protein 14 (TRP14)-li	99.07
PTZ00443	224	Thioredoxin domain-containing protein; Provisional	99.05
TIGR01068	101	thioredoxin thioredoxin. Several proteins, such as	99.05
PTZ00051	98	thioredoxin; Provisional	99.05
cd03065	120	PDI_b_Calsequestrin_N PDIb family, Calsequestrin s	99.04
cd02998	105	PDI_a_ERp38 PDIa family, endoplasmic reticulum pro	99.02
cd02965	111	HyaE HyaE family; HyaE is also called HupG and Hox	99.02
PF09695	160	YtfJ_HI0045: Bacterial protein of unknown function	99.0
cd02961	101	PDI_a_family Protein Disulfide Isomerase (PDIa) fa	98.99
cd03001	103	PDI_a_P5 PDIa family, P5 subfamily; composed of eu	98.96
cd02955	124	SSP411 TRX domain, SSP411 protein family; members	98.93
PRK00293	571	dipZ thiol:disulfide interchange protein precursor	98.93
cd02957	113	Phd_like Phosducin (Phd)-like family; composed of	98.92
cd02975	113	PfPDO_like_N Pyrococcus furiosus protein disulfide	98.9
cd02992	114	PDI_a_QSOX PDIa family, Quiescin-sulfhydryl oxidas	98.89
cd02989	113	Phd_like_TxnDC9 Phosducin (Phd)-like family, Thior	98.88
cd02947	93	TRX_family TRX family; composed of two groups: Gro	98.84
PTZ00102	477	disulphide isomerase; Provisional	98.81
cd02995	104	PDI_a_PDI_a'_C PDIa family, C-terminal TRX domain	98.8
PF05988	211	DUF899: Bacterial protein of unknown function (DUF	98.79
TIGR00424	463	APS_reduc 5'-adenylylsulfate reductase, thioredoxi	98.76
cd02958	114	UAS UAS family; UAS is a domain of unknown functio	98.75
cd02987	175	Phd_like_Phd Phosducin (Phd)-like family, Phd subf	98.75
KOG0908	288	consensus Thioredoxin-like protein [Posttranslatio	98.72
TIGR00411	82	redox_disulf_1 small redox-active disulfide protei	98.72
PLN02309	457	5'-adenylylsulfate reductase	98.71
cd02988	192	Phd_like_VIAF Phosducin (Phd)-like family, Viral i	98.6
TIGR00412	76	redox_disulf_2 small redox-active disulfide protei	98.59
cd02982	103	PDI_b'_family Protein Disulfide Isomerase (PDIb')	98.59
TIGR01130	462	ER_PDI_fam protein disulfide isomerases, eukaryoti	98.56
PTZ00062	204	glutaredoxin; Provisional	98.56
PTZ00102	477	disulphide isomerase; Provisional	98.51
PF13728	215	TraF: F plasmid transfer operon protein	98.51
PF13911	115	AhpC-TSA_2: AhpC/TSA antioxidant enzyme	98.48
PF05176	252	ATP-synt_10: ATP10 protein; InterPro: IPR007849 Th	98.47
cd02960	130	AGR Anterior Gradient (AGR) family; members of thi	98.46
TIGR02187	215	GlrX_arch Glutaredoxin-like domain protein. This f	98.44
TIGR02739	256	TraF type-F conjugative transfer system pilin asse	98.43
PHA02125	75	thioredoxin-like protein	98.41
PRK13703	248	conjugal pilus assembly protein TraF; Provisional	98.34
cd02973	67	TRX_GRX_like Thioredoxin (TRX)-Glutaredoxin (GRX)-	98.3
TIGR02187	215	GlrX_arch Glutaredoxin-like domain protein. This f	98.3
TIGR01130	462	ER_PDI_fam protein disulfide isomerases, eukaryoti	98.29
smart00594	122	UAS UAS domain.	98.29
KOG4498	197	consensus Uncharacterized conserved protein [Funct	98.28
COG0526	127	TrxA Thiol-disulfide isomerase and thioredoxins [P	98.27
cd01659	69	TRX_superfamily Thioredoxin (TRX) superfamily; a l	98.25
PF14595	129	Thioredoxin_9: Thioredoxin; PDB: 1Z6N_A.	98.22
PF04592	238	SelP_N: Selenoprotein P, N terminal region; InterP	98.22
COG4312	247	Uncharacterized protein conserved in bacteria [Fun	98.21
cd03026	89	AhpF_NTD_C TRX-GRX-like family, Alkyl hydroperoxid	98.19
PF13899	82	Thioredoxin_7: Thioredoxin-like; PDB: 2LST_A 3PH9_	98.14
KOG0190	493	consensus Protein disulfide isomerase (prolyl 4-hy	98.06
cd02991	116	UAS_ETEA UAS family, ETEA subfamily; composed of p	97.97
COG4232	569	Thiol:disulfide interchange protein [Posttranslati	97.75
COG2143	182	Thioredoxin-related protein [Posttranslational mod	97.68
KOG0191	383	consensus Thioredoxin/protein disulfide isomerase	97.68
COG3054	184	Predicted transcriptional regulator [General funct	97.63
PF06110	119	DUF953: Eukaryotic protein of unknown function (DU	97.57
KOG0190	493	consensus Protein disulfide isomerase (prolyl 4-hy	97.56
cd03007	116	PDI_a_ERp29_N PDIa family, endoplasmic reticulum p	97.51
PF13778	118	DUF4174: Domain of unknown function (DUF4174)	97.43
PRK10877	232	protein disulfide isomerase II DsbC; Provisional	97.4
KOG0912	375	consensus Thiol-disulfide isomerase and thioredoxi	97.39
PRK11657	251	dsbG disulfide isomerase/thiol-disulfide oxidase;	97.37
PRK11509	132	hydrogenase-1 operon protein HyaE; Provisional	97.31
PF03190	163	Thioredox_DsbH: Protein of unknown function, DUF25	97.28
TIGR02196	74	GlrX_YruB Glutaredoxin-like protein, YruB-family.	97.2
TIGR02200	77	GlrX_actino Glutaredoxin-like protein. This family	97.16
PF13192	76	Thioredoxin_3: Thioredoxin domain; PDB: 1ZYP_B 1ZY	96.84
KOG1731	606	consensus FAD-dependent sulfhydryl oxidase/quiesci	96.8
cd03020	197	DsbA_DsbC_DsbG DsbA family, DsbC and DsbG subfamil	96.66
cd03019	178	DsbA_DsbA DsbA family, DsbA subfamily; DsbA is a m	96.45
PF00462	60	Glutaredoxin: Glutaredoxin; InterPro: IPR002109 Gl	96.43
PRK10954	207	periplasmic protein disulfide isomerase I; Provisi	96.29
TIGR02180	84	GRX_euk Glutaredoxin. This model represents eukary	96.17
KOG3425	128	consensus Uncharacterized conserved protein [Funct	96.14
KOG0191	383	consensus Thioredoxin/protein disulfide isomerase	96.09
cd02979	167	PHOX_C FAD-dependent Phenol hydoxylase (PHOX) fami	96.09
PRK11200	85	grxA glutaredoxin 1; Provisional	95.97
cd02976	73	NrdH NrdH-redoxin (NrdH) family; NrdH is a small m	95.92
KOG4277	468	consensus Uncharacterized conserved protein, conta	95.9
TIGR02190	79	GlrX-dom Glutaredoxin-family domain. This C-termin	95.87
PF13462	162	Thioredoxin_4: Thioredoxin; PDB: 3FEU_A 3HZ8_A 3DV	95.73
PRK10329	81	glutaredoxin-like protein; Provisional	95.63
cd02066	72	GRX_family Glutaredoxin (GRX) family; composed of	95.5
cd03023	154	DsbA_Com1_like DsbA family, Com1-like subfamily; c	95.44
TIGR02194	72	GlrX_NrdH Glutaredoxin-like protein NrdH. NrdH-red	95.27
PF11009	105	DUF2847: Protein of unknown function (DUF2847); In	95.26
cd03419	82	GRX_GRXh_1_2_like Glutaredoxin (GRX) family, GRX h	94.86
PF02114	265	Phosducin: Phosducin; InterPro: IPR024253 The oute	94.72
TIGR03759	200	conj_TIGR03759 integrating conjugative element pro	94.71
PF07976	169	Phe_hydrox_dim: Phenol hydroxylase, C-terminal dim	94.58
TIGR02183	86	GRXA Glutaredoxin, GrxA family. This model include	94.55
TIGR03143	555	AhpF_homolog putative alkyl hydroperoxide reductas	94.35
COG0695	80	GrxC Glutaredoxin and related proteins [Posttransl	94.29
cd02972	98	DsbA_family DsbA family; consists of DsbA and DsbA	94.27
cd03418	75	GRX_GRXb_1_3_like Glutaredoxin (GRX) family, GRX b	94.26
TIGR02189	99	GlrX-like_plant Glutaredoxin-like family. This fam	93.42
TIGR00365	97	monothiol glutaredoxin, Grx4 family. The gene for	93.36
cd03029	72	GRX_hybridPRX5 Glutaredoxin (GRX) family, PRX5 hyb	93.05
TIGR02181	79	GRX_bact Glutaredoxin, GrxC family. This family of	92.91
KOG3414	142	consensus Component of the U4/U6.U5 snRNP/mitosis	92.89
KOG0914	265	consensus Thioredoxin-like protein [Posttranslatio	92.87
TIGR00995	270	3a0901s06TIC22 chloroplast protein import componen	92.86
PRK15317	517	alkyl hydroperoxide reductase subunit F; Provision	92.61
cd03027	73	GRX_DEP Glutaredoxin (GRX) family, Dishevelled, Eg	92.48
PHA03050	108	glutaredoxin; Provisional	92.42
cd03028	90	GRX_PICOT_like Glutaredoxin (GRX) family, PKC-inte	92.41
cd03032	115	ArsC_Spx Arsenate Reductase (ArsC) family, Spx sub	92.17
PF05768	81	DUF836: Glutaredoxin-like domain (DUF836); InterPr	92.08
cd03036	111	ArsC_like Arsenate Reductase (ArsC) family, unknow	92.03
TIGR01617	117	arsC_related transcriptional regulator, Spx/MgsR f	91.87
cd02983	130	P5_C P5 family, C-terminal redox inactive TRX-like	91.78
PRK01655	131	spxA transcriptional regulator Spx; Reviewed	91.74
PRK08294	634	phenol 2-monooxygenase; Provisional	91.31
cd02977	105	ArsC_family Arsenate Reductase (ArsC) family; comp	91.15
PLN03098	453	LPA1 LOW PSII ACCUMULATION1; Provisional	91.11
PRK10638	83	glutaredoxin 3; Provisional	91.1
KOG0911	227	consensus Glutaredoxin-related protein [Posttransl	90.8
PF08235	157	LNS2: LNS2 (Lipin/Ned1/Smp2); InterPro: IPR013209	90.69
PRK10824	115	glutaredoxin-4; Provisional	90.43
PRK12559	131	transcriptional regulator Spx; Provisional	90.01
TIGR03140	515	AhpF alkyl hydroperoxide reductase, F subunit. Thi	89.51
PF04278	274	Tic22: Tic22-like family; InterPro: IPR007378 Chlo	89.21
COG1651	244	DsbG Protein-disulfide isomerase [Posttranslationa	89.17
COG3019	149	Predicted metal-binding protein [General function	89.03
PRK13344	132	spxA transcriptional regulator Spx; Reviewed	88.98
COG1331	667	Highly conserved protein containing a thioredoxin	88.56
COG2179	175	Predicted hydrolase of the HAD superfamily [Genera	88.46
PF13848	184	Thioredoxin_6: Thioredoxin-like domain; PDB: 3EC3_	87.78
cd03035	105	ArsC_Yffb Arsenate Reductase (ArsC) family, Yffb s	87.53
PRK06184	502	hypothetical protein; Provisional	87.28
PRK10026	141	arsenate reductase; Provisional	87.12
TIGR03143	555	AhpF_homolog putative alkyl hydroperoxide reductas	86.87
PRK06183	538	mhpA 3-(3-hydroxyphenyl)propionate hydroxylase; Va	86.82
PTZ00062	204	glutaredoxin; Provisional	86.79
KOG4614	287	consensus Inner membrane protein required for asse	84.08
PRK08132	547	FAD-dependent oxidoreductase; Provisional	84.03
TIGR03765	105	ICE_PFL_4695 integrating conjugative element prote	81.64
COG4545	85	Glutaredoxin-related protein [Posttranslational mo	81.15
PF01323	193	DSBA: DSBA-like thioredoxin domain; InterPro: IPR0	80.41

>COG1225 Bcp Peroxiredoxin [Posttranslational modification, protein turnover, chaperones]

Probab=99.98  E-value=3.9e-31  Score=197.18  Aligned_cols=148  Identities=45%  Similarity=0.790  Sum_probs=134.7

Q ss_pred             ccCCCCCCCCCeEEeCCCCCeeecCCcCCCcEEEEEEcCCCChhhHHHHHHHHHHHHHHHHcCcEEEEEeCCCHHHHHHH
Q 028030           66 AKVSKGQAPPSFTLKDQEGRNVSLSKFKGKPVVVYFYPADETPGCTKQACAFRDSYEKFKKAGAEVIGISGDDSSSHKAF  145 (215)
Q Consensus        66 ~~~~~g~~~P~f~l~~~~g~~~~l~~~~gk~~ll~f~~a~~C~~C~~~~~~l~~l~~~~~~~~v~vv~vs~d~~~~~~~~  145 (215)
                      ..+++|+++|||++++.+|+.++|++++||++||+|||..++|.|..++..|+++++++++.|.+|+|||.|+++.+++|
T Consensus         2 ~~l~~G~~aPdF~Lp~~~g~~v~Lsd~~Gk~VVLyFYPk~~TpgCT~Ea~~Frd~~~ef~~~~a~V~GIS~Ds~~~~~~F   81 (157)
T COG1225           2 MMLKVGDKAPDFELPDQDGETVSLSDLRGKPVVLYFYPKDFTPGCTTEACDFRDLLEEFEKLGAVVLGISPDSPKSHKKF   81 (157)
T ss_pred             CcCCCCCcCCCeEeecCCCCEEehHHhcCCcEEEEECCCCCCCcchHHHHHHHHHHHHHHhCCCEEEEEeCCCHHHHHHH
Confidence            35789999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHcCCCeEEEEcCChhHHHHhCCCccC--CC---CCCccEEEEEcCCCcEEEEEeCCCCCCccHHHHHHHHhc
Q 028030          146 AKKYRLPYTLLSDEGNKVRKEWGVPADF--FG---SLPGRQTYILDKNGVVQLIYNNQFQPEKHIDETLKFLQS  214 (215)
Q Consensus       146 ~~~~~~~~~~~~d~~~~~~~~~g~~~~~--~g---~~p~~~~~lid~~G~v~~~~~g~~~~~~~~~~il~~l~~  214 (215)
                      +++++++|++++|+++++.++||+....  +|   ..+.|.+||||++|+|++.| .......+.+++++.|++
T Consensus        82 ~~k~~L~f~LLSD~~~~v~~~ygv~~~k~~~gk~~~~~~R~TfvId~dG~I~~~~-~~v~~~~h~~~vl~~l~~  154 (157)
T COG1225          82 AEKHGLTFPLLSDEDGEVAEAYGVWGEKKMYGKEYMGIERSTFVIDPDGKIRYVW-RKVKVKGHADEVLAALKK  154 (157)
T ss_pred             HHHhCCCceeeECCcHHHHHHhCcccccccCccccccccceEEEECCCCeEEEEe-cCCCCcccHHHHHHHHHH
Confidence            9999999999999999999999998642  22   13456999999999999999 445667788889988864

>PLN02399 phospholipid hydroperoxide glutathione peroxidase

Probab=99.97  E-value=3.5e-29  Score=200.28  Aligned_cols=177  Identities=25%  Similarity=0.356  Sum_probs=132.9

Q ss_pred             cCCCccccccCccccccccCCC-CCCccccccccccCCCCCCCCCeEEeCCCCCeeecCCcCCCcEEEEEEcCCCChhhH
Q 028030           33 SKSSSQSQFFGLRFSFSSNLPI-PSSTSFKTSISAKVSKGQAPPSFTLKDQEGRNVSLSKFKGKPVVVYFYPADETPGCT  111 (215)
Q Consensus        33 s~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~~P~f~l~~~~g~~~~l~~~~gk~~ll~f~~a~~C~~C~  111 (215)
                      |..++.+++++.++++++.-.. ................|+.+|+|+++|.+|+.+++++++||++||+|| ++||++|.
T Consensus        37 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~aPdF~l~d~~G~~vsLsd~kGK~vvl~Fw-AswCp~c~  115 (236)
T PLN02399         37 STGISKSAFLSNGFSLKSPNSPGFLSKSRSFGVYARAATEKSVHDFTVKDIDGKDVALSKFKGKVLLIVNV-ASKCGLTS  115 (236)
T ss_pred             ccccccchhhccccccccCCCccccccccccccccchhcCCCCCceEEECCCCCEEeHHHhCCCeEEEEEE-cCCCcchH
Confidence            3444688899999998865322 222223333344556899999999999999999999999999999999 99999999


Q ss_pred             HHHHHHHHHHHHHHHcCcEEEEEeC--------CCHHHHHHHH-HHcCCCeEEEE--cCCh-hHHHHhCCC--------c
Q 028030          112 KQACAFRDSYEKFKKAGAEVIGISG--------DDSSSHKAFA-KKYRLPYTLLS--DEGN-KVRKEWGVP--------A  171 (215)
Q Consensus       112 ~~~~~l~~l~~~~~~~~v~vv~vs~--------d~~~~~~~~~-~~~~~~~~~~~--d~~~-~~~~~~g~~--------~  171 (215)
                      .++|.|++++++|+++|++||+|+.        ++.+++++|+ ++++++||++.  |.++ .+...|++.        +
T Consensus       116 ~e~p~L~~L~~~~~~~Gv~VIgV~~d~~~~~e~~s~~ei~~f~~~~~g~~fPvl~~~D~~G~~~~~~y~~l~~~~~~~~g  195 (236)
T PLN02399        116 SNYSELSHLYEKYKTQGFEILAFPCNQFGGQEPGSNPEIKQFACTRFKAEFPIFDKVDVNGPSTAPVYQFLKSNAGGFLG  195 (236)
T ss_pred             HHHHHHHHHHHHHhcCCcEEEEEecccccccCCCCHHHHHHHHHHhcCCCCccccccCCCcchhhHHHHHHHHhcCCccC
Confidence            9999999999999999999999996        3567899998 68999999985  3333 344444321        1


Q ss_pred             cCCCCCCccEEEEEcCCCcEEEEEeCCCCCCccHHHHHHHH
Q 028030          172 DFFGSLPGRQTYILDKNGVVQLIYNNQFQPEKHIDETLKFL  212 (215)
Q Consensus       172 ~~~g~~p~~~~~lid~~G~v~~~~~g~~~~~~~~~~il~~l  212 (215)
                      +.....|  ++||||++|+|+.++.|..+.+...+.|.++|
T Consensus       196 ~~i~~~P--ttfLIDk~GkVv~~~~G~~~~~~le~~I~~lL  234 (236)
T PLN02399        196 DLIKWNF--EKFLVDKNGKVVERYPPTTSPFQIEKDIQKLL  234 (236)
T ss_pred             CccccCc--eEEEECCCCcEEEEECCCCCHHHHHHHHHHHh
Confidence            0011245  99999999999999999765443333333333

>PF08534 Redoxin: Redoxin; InterPro: IPR013740 This redoxin domain is found in peroxiredoxin, thioredoxin and glutaredoxin proteins

Probab=99.97  E-value=2.3e-29  Score=188.68  Aligned_cols=138  Identities=38%  Similarity=0.653  Sum_probs=118.7

Q ss_pred             CCCCCCCCeEEeC--CCCCeeecCCcCCCcEEEEEEcCC-CChhhHHHHHHHHHHHHHHHHcCcEEEEEeCCCHHHHHHH
Q 028030           69 SKGQAPPSFTLKD--QEGRNVSLSKFKGKPVVVYFYPAD-ETPGCTKQACAFRDSYEKFKKAGAEVIGISGDDSSSHKAF  145 (215)
Q Consensus        69 ~~g~~~P~f~l~~--~~g~~~~l~~~~gk~~ll~f~~a~-~C~~C~~~~~~l~~l~~~~~~~~v~vv~vs~d~~~~~~~~  145 (215)
                      ++|+++|+|++++  .+|+.+++++++||++||+|| ++ ||++|+.++|.|++++++|+++|+++++|+.++...+++|
T Consensus         1 k~G~~~P~~~~~~~~~~g~~~~l~~~~gk~~vv~f~-~~~~Cp~C~~~~p~l~~l~~~~~~~~v~~v~v~~~~~~~~~~~   79 (146)
T PF08534_consen    1 KVGDKAPDFSLKDLDLDGKPVSLSDFKGKPVVVNFW-ASAWCPPCRKELPYLNELQEKYKDKGVDVVGVSSDDDPPVREF   79 (146)
T ss_dssp             STTSB--CCEEEEEETTSEEEEGGGGTTSEEEEEEE-STTTSHHHHHHHHHHHHHHHHHHTTTCEEEEEEESSSHHHHHH
T ss_pred             CCCCCCCCeEEEeecCCCCEecHHHhCCCeEEEEEE-ccCCCCcchhhhhhHHhhhhhhccCceEEEEecccCCHHHHHH
Confidence            5799999999966  999999999999999999999 77 9999999999999999999999999999999877779999


Q ss_pred             HHHcCCCeEEEEcCChhHHHHhCCCc--c-CCC-CCCccEEEEEcCCCcEEEEEeCCCCC-CccHHHHH
Q 028030          146 AKKYRLPYTLLSDEGNKVRKEWGVPA--D-FFG-SLPGRQTYILDKNGVVQLIYNNQFQP-EKHIDETL  209 (215)
Q Consensus       146 ~~~~~~~~~~~~d~~~~~~~~~g~~~--~-~~g-~~p~~~~~lid~~G~v~~~~~g~~~~-~~~~~~il  209 (215)
                      +++++.+|+++.|+++.+.+.|++..  . ..| .+|  +++|||++|+|++.+.|.... .++++++|
T Consensus        80 ~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~P--~~~lId~~G~V~~~~~g~~~~~~~~~~~~l  146 (146)
T PF08534_consen   80 LKKYGINFPVLSDPDGALAKALGVTIMEDPGNGFGIP--TTFLIDKDGKVVYRHVGPDPDEESDLEAVL  146 (146)
T ss_dssp             HHHTTTTSEEEEETTSHHHHHTTCEEECCTTTTSSSS--EEEEEETTSBEEEEEESSBTTSHHSHHHHH
T ss_pred             HHhhCCCceEEechHHHHHHHhCCccccccccCCeec--EEEEEECCCEEEEEEeCCCCCCCCChhhcC
Confidence            99999999999999999999999871  0 111 277  999999999999999996553 34454443

Peroxiredoxins (Prxs) constitute a family of thiol peroxidases that reduce hydrogen peroxide, peroxinitrite, and hydroperoxides using a strictly conserved cysteine []. Chloroplast thioredoxin systems in plants regulate the enzymes involved in photosynthetic carbon assimilation []. It is thought that redoxins have a large role to play in anti-oxidant defence. Cadmium-sensitive proteins are also regulated via thioredoxin and glutaredoxin thiol redox systems [].; GO: 0016491 oxidoreductase activity; PDB: 2H30_A 1TP9_A 1Y25_A 1XVQ_A 2B1K_A 2G0F_A 2B1L_B 3K8N_A 1Z5Y_E 3OR5_A ....

>PRK09437 bcp thioredoxin-dependent thiol peroxidase; Reviewed

Probab=99.97  E-value=6.6e-29  Score=187.97  Aligned_cols=146  Identities=39%  Similarity=0.717  Sum_probs=128.8

Q ss_pred             ccCCCCCCCCCeEEeCCCCCeeecCCcCCCcEEEEEEcCCCChhhHHHHHHHHHHHHHHHHcCcEEEEEeCCCHHHHHHH
Q 028030           66 AKVSKGQAPPSFTLKDQEGRNVSLSKFKGKPVVVYFYPADETPGCTKQACAFRDSYEKFKKAGAEVIGISGDDSSSHKAF  145 (215)
Q Consensus        66 ~~~~~g~~~P~f~l~~~~g~~~~l~~~~gk~~ll~f~~a~~C~~C~~~~~~l~~l~~~~~~~~v~vv~vs~d~~~~~~~~  145 (215)
                      ..+++|+.+|+|++++.+|+.+++++++||++||+||++.||+.|..+++.|++++++++++|+++|+|+.|+++++++|
T Consensus         2 ~~~~~g~~~p~f~l~~~~G~~~~l~~~~gk~~ll~f~~~~~~p~C~~~~~~l~~~~~~~~~~~v~vi~Is~d~~~~~~~~   81 (154)
T PRK09437          2 NPLKAGDIAPKFSLPDQDGEQVSLTDFQGQRVLVYFYPKAMTPGCTVQACGLRDNMDELKKAGVVVLGISTDKPEKLSRF   81 (154)
T ss_pred             CcCCCCCcCCCcEeeCCCCCEEeHHHhCCCCEEEEEECCCCCCchHHHHHHHHHHHHHHHHCCCEEEEEcCCCHHHHHHH
Confidence            35688999999999999999999999999999999997778999999999999999999999999999999999999999


Q ss_pred             HHHcCCCeEEEEcCChhHHHHhCCCccCC-------CCCCccEEEEEcCCCcEEEEEeCCCCCCccHHHHHHHHhc
Q 028030          146 AKKYRLPYTLLSDEGNKVRKEWGVPADFF-------GSLPGRQTYILDKNGVVQLIYNNQFQPEKHIDETLKFLQS  214 (215)
Q Consensus       146 ~~~~~~~~~~~~d~~~~~~~~~g~~~~~~-------g~~p~~~~~lid~~G~v~~~~~g~~~~~~~~~~il~~l~~  214 (215)
                      +++++++|+++.|+.+.+.+.||+.....       +..|  ++||||++|+|++.+.|.. ..+..+++++.+++
T Consensus        82 ~~~~~~~~~~l~D~~~~~~~~~gv~~~~~~~~~~~~~~~~--~~~lid~~G~i~~~~~g~~-~~~~~~~~~~~~~~  154 (154)
T PRK09437         82 AEKELLNFTLLSDEDHQVAEQFGVWGEKKFMGKTYDGIHR--ISFLIDADGKIEHVFDKFK-TSNHHDVVLDYLKE  154 (154)
T ss_pred             HHHhCCCCeEEECCCchHHHHhCCCcccccccccccCcce--EEEEECCCCEEEEEEcCCC-cchhHHHHHHHHhC
Confidence            99999999999999999999999875210       1123  7899999999999998853 34557888888764

>cd03018 PRX_AhpE_like Peroxiredoxin (PRX) family, AhpE-like subfamily; composed of proteins similar to Mycobacterium tuberculosis AhpE

Probab=99.96  E-value=7.4e-29  Score=186.38  Aligned_cols=145  Identities=39%  Similarity=0.673  Sum_probs=127.9

Q ss_pred             CCCCCCCCCeEEeCCCCCeeecCCcCC-CcEEEEEEcCCCChhhHHHHHHHHHHHHHHHHcCcEEEEEeCCCHHHHHHHH
Q 028030           68 VSKGQAPPSFTLKDQEGRNVSLSKFKG-KPVVVYFYPADETPGCTKQACAFRDSYEKFKKAGAEVIGISGDDSSSHKAFA  146 (215)
Q Consensus        68 ~~~g~~~P~f~l~~~~g~~~~l~~~~g-k~~ll~f~~a~~C~~C~~~~~~l~~l~~~~~~~~v~vv~vs~d~~~~~~~~~  146 (215)
                      +++|+++|+|.+.+.+|+.+++++++| |++||+||+++||+.|..+++.|++++++++++|+++|+|+.|+++.+++|+
T Consensus         1 ~~~G~~~p~~~l~~~~g~~v~l~~~~g~k~~vl~f~~~~~c~~C~~~~~~l~~~~~~~~~~~v~vi~vs~d~~~~~~~~~   80 (149)
T cd03018           1 LEVGDKAPDFELPDQNGQEVRLSEFRGRKPVVLVFFPLAFTPVCTKELCALRDSLELFEAAGAEVLGISVDSPFSLRAWA   80 (149)
T ss_pred             CCCCCcCCCcEecCCCCCEEeHHHHcCCCeEEEEEeCCCCCccHHHHHHHHHHHHHHHHhCCCEEEEecCCCHHHHHHHH
Confidence            468999999999999999999999999 9999999989999999999999999999999889999999999999999999


Q ss_pred             HHcCCCeEEEEcCC--hhHHHHhCCCccCCCCCCccEEEEEcCCCcEEEEEeCCCCCCccHHHHHHHHh
Q 028030          147 KKYRLPYTLLSDEG--NKVRKEWGVPADFFGSLPGRQTYILDKNGVVQLIYNNQFQPEKHIDETLKFLQ  213 (215)
Q Consensus       147 ~~~~~~~~~~~d~~--~~~~~~~g~~~~~~g~~p~~~~~lid~~G~v~~~~~g~~~~~~~~~~il~~l~  213 (215)
                      ++++++|+++.|..  +++.+.||+.....+ +|.+++||||++|+|++.+.|......+..++.+.|+
T Consensus        81 ~~~~~~~~~~~D~~~~~~~~~~~g~~~~~~~-~~~~~~~lid~~G~v~~~~~~~~~~~~~~~~~~~~~~  148 (149)
T cd03018          81 EENGLTFPLLSDFWPHGEVAKAYGVFDEDLG-VAERAVFVIDRDGIIRYAWVSDDGEPRDLPDYDEALD  148 (149)
T ss_pred             HhcCCCceEecCCCchhHHHHHhCCccccCC-CccceEEEECCCCEEEEEEecCCcccccchhHHHHhh
Confidence            99999999999987  999999999853322 5667999999999999999986533444555555554

AhpE is described as a 1-cys PRX because of the absence of a resolving cysteine. The structure and sequence of AhpE, however, show greater similarity to 2-cys PRXs than 1-cys PRXs. PRXs are thiol-specific antioxidant (TSA) proteins that confer a protective role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. The first step of catalysis is the nucleophilic attack by the peroxidatic cysteine on the peroxide leading to the formation of a cysteine sulfenic acid intermediate. The absence of a resolving cysteine suggests that functional AhpE is regenerated by an external reductant. The solution behavior and crystal structure of AhpE show that it forms dimers and octamers.

>TIGR03137 AhpC peroxiredoxin

Probab=99.96  E-value=9e-29  Score=193.00  Aligned_cols=145  Identities=28%  Similarity=0.456  Sum_probs=126.9

Q ss_pred             CCCCCCCCeEEeC-CCCC--eeecCCcCCCcEEEEEEcCCCChhhHHHHHHHHHHHHHHHHcCcEEEEEeCCCHHHHHHH
Q 028030           69 SKGQAPPSFTLKD-QEGR--NVSLSKFKGKPVVVYFYPADETPGCTKQACAFRDSYEKFKKAGAEVIGISGDDSSSHKAF  145 (215)
Q Consensus        69 ~~g~~~P~f~l~~-~~g~--~~~l~~~~gk~~ll~f~~a~~C~~C~~~~~~l~~l~~~~~~~~v~vv~vs~d~~~~~~~~  145 (215)
                      .+|+.+|+|++.+ .+|+  .+++++++||++||+|||++||++|..+++.|++++++++++|++||+||.|+.+.+++|
T Consensus         3 ~~G~~aP~f~l~~~~~g~~~~~sl~d~~Gk~vvl~F~p~~~cp~C~~el~~l~~~~~~~~~~gv~vi~VS~D~~~~~~~~   82 (187)
T TIGR03137         3 LINTEIKPFKATAYHNGEFVEVTDEDVKGKWSVFFFYPADFTFVCPTELEDLADKYAELKKLGVEVYSVSTDTHFVHKAW   82 (187)
T ss_pred             ccCCcCCCcEeeeccCCceeEecHHHHCCCEEEEEEECCCcCCcCHHHHHHHHHHHHHHHhcCCcEEEEeCCCHHHHHHH
Confidence            4799999999998 5776  688889999999999999999999999999999999999999999999999999988888


Q ss_pred             HHHc----CCCeEEEEcCChhHHHHhCCCccCCCCCCccEEEEEcCCCcEEEEEeCCCCCCccHHHHHHHHhc
Q 028030          146 AKKY----RLPYTLLSDEGNKVRKEWGVPADFFGSLPGRQTYILDKNGVVQLIYNNQFQPEKHIDETLKFLQS  214 (215)
Q Consensus       146 ~~~~----~~~~~~~~d~~~~~~~~~g~~~~~~g~~p~~~~~lid~~G~v~~~~~g~~~~~~~~~~il~~l~~  214 (215)
                      .+..    +++|+++.|+++++.+.||+.....| ++.|.+||||++|+|++.+.+....+...+++++.|++
T Consensus        83 ~~~~~~~~~l~fpllsD~~~~~a~~~gv~~~~~g-~~~p~tfiID~~G~I~~~~~~~~~~~~~~~~ll~~l~~  154 (187)
T TIGR03137        83 HDTSEAIGKITYPMLGDPTGVLTRNFGVLIEEAG-LADRGTFVIDPEGVIQAVEITDNGIGRDASELLRKIKA  154 (187)
T ss_pred             HhhhhhccCcceeEEECCccHHHHHhCCcccCCC-ceeeEEEEECCCCEEEEEEEeCCCCCCCHHHHHHHHHH
Confidence            8754    68899999999999999999754333 33459999999999999987765666788999988753

This gene contains two invariant cysteine residues, one near the N-terminus and one near the C-terminus, each followed immediately by a proline residue.

>cd03015 PRX_Typ2cys Peroxiredoxin (PRX) family, Typical 2-Cys PRX subfamily; PRXs are thiol-specific antioxidant (TSA) proteins, which confer a protective role in cells through its peroxidase activity by reducing hydrogen peroxide, peroxynitrite, and organic hydroperoxides

Probab=99.96  E-value=3.3e-28  Score=187.67  Aligned_cols=144  Identities=37%  Similarity=0.631  Sum_probs=126.1

Q ss_pred             CCCCCCCeEEeCCCC----CeeecCCcCCCcEEEEEEcCCCChhhHHHHHHHHHHHHHHHHcCcEEEEEeCCCHHHHHHH
Q 028030           70 KGQAPPSFTLKDQEG----RNVSLSKFKGKPVVVYFYPADETPGCTKQACAFRDSYEKFKKAGAEVIGISGDDSSSHKAF  145 (215)
Q Consensus        70 ~g~~~P~f~l~~~~g----~~~~l~~~~gk~~ll~f~~a~~C~~C~~~~~~l~~l~~~~~~~~v~vv~vs~d~~~~~~~~  145 (215)
                      +|+++|+|++.+.+|    +.+++++++||++||+||+++||+.|..+++.|++++++|.++|+++++|+.|+.+..++|
T Consensus         1 vG~~aP~f~~~~~~g~~~~~~~~l~~~~Gk~vvl~F~~~~~c~~C~~~l~~l~~~~~~~~~~~v~vv~Is~d~~~~~~~~   80 (173)
T cd03015           1 VGKKAPDFKATAVVPNGEFKEISLSDYKGKWVVLFFYPLDFTFVCPTEIIAFSDRYEEFKKLNAEVLGVSTDSHFSHLAW   80 (173)
T ss_pred             CCCcCCCCEeecccCCCCceEEehHHhCCCEEEEEEECCCCCCcCHHHHHHHHHHHHHHHHCCCEEEEEecCCHHHHHHH
Confidence            589999999999887    7899999999999999999999999999999999999999999999999999998877788


Q ss_pred             HHH-------cCCCeEEEEcCChhHHHHhCCCccCCCCCCccEEEEEcCCCcEEEEEeCCCCCCccHHHHHHHHhc
Q 028030          146 AKK-------YRLPYTLLSDEGNKVRKEWGVPADFFGSLPGRQTYILDKNGVVQLIYNNQFQPEKHIDETLKFLQS  214 (215)
Q Consensus       146 ~~~-------~~~~~~~~~d~~~~~~~~~g~~~~~~g~~p~~~~~lid~~G~v~~~~~g~~~~~~~~~~il~~l~~  214 (215)
                      .+.       .+++|+++.|+.+++.+.||+.....+ .+.|++||||++|+|++.+.+....+...+++++.|++
T Consensus        81 ~~~~~~~~~~~~~~f~~l~D~~~~~~~~~gv~~~~~~-~~~p~~~lID~~G~I~~~~~~~~~~~~~~~~il~~l~~  155 (173)
T cd03015          81 RNTPRKEGGLGKINFPLLADPKKKISRDYGVLDEEEG-VALRGTFIIDPEGIIRHITVNDLPVGRSVDETLRVLDA  155 (173)
T ss_pred             HHhhhhhCCccCcceeEEECCchhHHHHhCCccccCC-ceeeEEEEECCCCeEEEEEecCCCCCCCHHHHHHHHHH
Confidence            775       458899999999999999999753322 33449999999999999998765556677888888764

The functional unit of typical 2-cys PRX is a homodimer. A unique intermolecular redox-active disulfide center is utilized for its activity. Upon reaction with peroxides, its peroxidatic cysteine is oxidized into a sulfenic acid intermediate which is resolved by bonding with the resolving cysteine from the other subunit of the homodimer. This intermolecular disulfide bond is then reduced by thioredoxin, tryparedoxin or AhpF. Typical 2-cys PRXs, like 1-cys PRXs, form decamers which are stabilized by reduction of the active site cysteine. Typical 2-cys PRX interacts through beta strands at one edge of the monomer (B-type interface) to form the functional homodimer, and uses an A-type interface (similar to the dimeric

>PRK10382 alkyl hydroperoxide reductase subunit C; Provisional

Probab=99.96  E-value=3.8e-28  Score=188.77  Aligned_cols=146  Identities=23%  Similarity=0.375  Sum_probs=128.2

Q ss_pred             CCCCCCCCCeEEeC---CCCCeeecCCcCCCcEEEEEEcCCCChhhHHHHHHHHHHHHHHHHcCcEEEEEeCCCHHHHHH
Q 028030           68 VSKGQAPPSFTLKD---QEGRNVSLSKFKGKPVVVYFYPADETPGCTKQACAFRDSYEKFKKAGAEVIGISGDDSSSHKA  144 (215)
Q Consensus        68 ~~~g~~~P~f~l~~---~~g~~~~l~~~~gk~~ll~f~~a~~C~~C~~~~~~l~~l~~~~~~~~v~vv~vs~d~~~~~~~  144 (215)
                      ..+|+++|+|+...   -+...++|++++||++||+|||++||+.|..+++.|++++++++++|++|++||.|+.+.+++
T Consensus         2 ~~~~~~~p~f~~~~~~~g~~~~v~L~d~~Gk~vvL~F~P~~~~p~C~~el~~l~~~~~~f~~~g~~vigIS~D~~~~~~a   81 (187)
T PRK10382          2 SLINTKIKPFKNQAFKNGEFIEVTEKDTEGRWSVFFFYPADFTFVCPTELGDVADHYEELQKLGVDVYSVSTDTHFTHKA   81 (187)
T ss_pred             CccCCcCCCcEEEEEeCCcceEEEHHHhCCCeEEEEEECCCCCCcCHHHHHHHHHHHHHHHhCCCEEEEEeCCCHHHHHH
Confidence            46899999999875   344667888999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHH----cCCCeEEEEcCChhHHHHhCCCccCCCCCCccEEEEEcCCCcEEEEEeCCCCCCccHHHHHHHHhc
Q 028030          145 FAKK----YRLPYTLLSDEGNKVRKEWGVPADFFGSLPGRQTYILDKNGVVQLIYNNQFQPEKHIDETLKFLQS  214 (215)
Q Consensus       145 ~~~~----~~~~~~~~~d~~~~~~~~~g~~~~~~g~~p~~~~~lid~~G~v~~~~~g~~~~~~~~~~il~~l~~  214 (215)
                      |.+.    .+++||++.|+++.+.+.||+.....| ++.|.+||||++|+|++.+........+.+++++.|++
T Consensus        82 ~~~~~~~~~~l~fpllsD~~~~ia~~ygv~~~~~g-~~~r~tfIID~~G~I~~~~~~~~~~~~~~~eil~~l~a  154 (187)
T PRK10382         82 WHSSSETIAKIKYAMIGDPTGALTRNFDNMREDEG-LADRATFVVDPQGIIQAIEVTAEGIGRDASDLLRKIKA  154 (187)
T ss_pred             HHHhhccccCCceeEEEcCchHHHHHcCCCcccCC-ceeeEEEEECCCCEEEEEEEeCCCCCCCHHHHHHHHHh
Confidence            9976    378999999999999999999643323 54459999999999999988766677789999998864

>PRK13599 putative peroxiredoxin; Provisional

Probab=99.96  E-value=5.2e-28  Score=192.02  Aligned_cols=146  Identities=27%  Similarity=0.446  Sum_probs=125.7

Q ss_pred             CCCCCCCCeEEeCCCCCeeecCCcCCCcEEEEEEcCCCChhhHHHHHHHHHHHHHHHHcCcEEEEEeCCCHHHHHHHHH-
Q 028030           69 SKGQAPPSFTLKDQEGRNVSLSKFKGKPVVVYFYPADETPGCTKQACAFRDSYEKFKKAGAEVIGISGDDSSSHKAFAK-  147 (215)
Q Consensus        69 ~~g~~~P~f~l~~~~g~~~~l~~~~gk~~ll~f~~a~~C~~C~~~~~~l~~l~~~~~~~~v~vv~vs~d~~~~~~~~~~-  147 (215)
                      .+|+++|+|++.+.+|+...+++++||++||+|++++||++|..+++.|++++++|+++|+++|+||.|+.+.+++|.+ 
T Consensus         3 ~~Gd~aPdF~l~t~~G~~~~~~~~~Gk~vVL~~~pa~~tpvCt~El~~l~~~~~~f~~~gv~vigIS~D~~~~~~~w~~~   82 (215)
T PRK13599          3 LLGEKFPSMEVVTTQGVKRLPEDYAGKWFVLFSHPADFTPVCTTEFVEFARKANDFKELNTELIGLSVDQVFSHIKWVEW   82 (215)
T ss_pred             CCCCCCCCCEeECCCCcEecHHHHCCCeEEEEEeCCCCCCcCHHHHHHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHh
Confidence            5899999999999999988888999999877676799999999999999999999999999999999999988777765 


Q ss_pred             -----HcCCCeEEEEcCChhHHHHhCCCccCCCCCCccEEEEEcCCCcEEEEEeCCCCCCccHHHHHHHHhc
Q 028030          148 -----KYRLPYTLLSDEGNKVRKEWGVPADFFGSLPGRQTYILDKNGVVQLIYNNQFQPEKHIDETLKFLQS  214 (215)
Q Consensus       148 -----~~~~~~~~~~d~~~~~~~~~g~~~~~~g~~p~~~~~lid~~G~v~~~~~g~~~~~~~~~~il~~l~~  214 (215)
                           ..+++||++.|.++++++.||+.....+..+.|.+||||++|+|++.+........+++++++.|++
T Consensus        83 i~~~~~~~i~fPil~D~~~~va~~yg~~~~~~~~~~~R~tfIID~dG~Ir~~~~~p~~~gr~~~eilr~l~~  154 (215)
T PRK13599         83 IKDNTNIAIPFPVIADDLGKVSNQLGMIHPGKGTNTVRAVFIVDDKGTIRLIMYYPQEVGRNVDEILRALKA  154 (215)
T ss_pred             HHHhcCCCCceeEEECCCchHHHHcCCCccCCCCceeeEEEEECCCCEEEEEEEcCCCCCCCHHHHHHHHHH
Confidence                 3478899999999999999999643323223449999999999999987655667889999998863

>PF00578 AhpC-TSA: AhpC/TSA family; InterPro: IPR000866 Peroxiredoxins (Prxs) are a ubiquitous family of antioxidant enzymes that also control cytokine-induced peroxide levels which mediate signal transduction in mammalian cells

Probab=99.96  E-value=2.6e-28  Score=177.68  Aligned_cols=123  Identities=37%  Similarity=0.743  Sum_probs=113.2

Q ss_pred             CCCCCCCeEEeCCCCCeeecCCcCCCcEEEEEEcCCCChhhHHHHHHHHHHHHHHHHcCcEEEEEeCCCHHHHHHHHHHc
Q 028030           70 KGQAPPSFTLKDQEGRNVSLSKFKGKPVVVYFYPADETPGCTKQACAFRDSYEKFKKAGAEVIGISGDDSSSHKAFAKKY  149 (215)
Q Consensus        70 ~g~~~P~f~l~~~~g~~~~l~~~~gk~~ll~f~~a~~C~~C~~~~~~l~~l~~~~~~~~v~vv~vs~d~~~~~~~~~~~~  149 (215)
                      +|+++|+|++++.+|+.+++++++||++||+||+..||+.|..+++.|++++++|+++|+++++|+.|+.+++++|.+.+
T Consensus         1 vG~~~P~f~l~~~~g~~~~l~~l~gk~~vl~f~~~~~c~~c~~~l~~l~~~~~~~~~~~~~vi~is~d~~~~~~~~~~~~   80 (124)
T PF00578_consen    1 VGDKAPDFTLTDSDGKTVSLSDLKGKPVVLFFWPTAWCPFCQAELPELNELYKKYKDKGVQVIGISTDDPEEIKQFLEEY   80 (124)
T ss_dssp             TTSBGGCEEEETTTSEEEEGGGGTTSEEEEEEESTTTSHHHHHHHHHHHHHHHHHHTTTEEEEEEESSSHHHHHHHHHHH
T ss_pred             CcCCCCCcEeECCCCCEEEHHHHCCCcEEEEEeCccCccccccchhHHHHHhhhhccceEEeeecccccccchhhhhhhh
Confidence            69999999999999999999999999999999955599999999999999999999999999999999999999999999


Q ss_pred             CCCeEEEEcCChhHHHHhCCCccC-CCCCCccEEEEEcCCCcEEEE
Q 028030          150 RLPYTLLSDEGNKVRKEWGVPADF-FGSLPGRQTYILDKNGVVQLI  194 (215)
Q Consensus       150 ~~~~~~~~d~~~~~~~~~g~~~~~-~g~~p~~~~~lid~~G~v~~~  194 (215)
                      +++|+++.|.++++.+.||+.... ...+|  .+||||++|+|+++
T Consensus        81 ~~~~~~~~D~~~~~~~~~~~~~~~~~~~~p--~~~lid~~g~I~~~  124 (124)
T PF00578_consen   81 GLPFPVLSDPDGELAKAFGIEDEKDTLALP--AVFLIDPDGKIRYA  124 (124)
T ss_dssp             TCSSEEEEETTSHHHHHTTCEETTTSEESE--EEEEEETTSBEEEE
T ss_pred             ccccccccCcchHHHHHcCCccccCCceEe--EEEEECCCCEEEeC
Confidence            999999999999999999998321 11256  99999999999974

Prxs can be regulated by changes to phosphorylation, redox and possibly oligomerisation states. Prxs are divided into three classes: typical 2-Cys Prxs; atypical 2-Cys Prxs; and 1-Cys Prxs. All Prxs share the same basic catalytic mechanism, in which an active-site cysteine (the peroxidatic cysteine) is oxidised to a sulphenic acid by the peroxide substrate. The recycling of the sulphenic acid back to a thiol is what distinguishes the three enzyme classes. Using crystal structures, a detailed catalytic cycle has been derived for typical 2-Cys Prxs, including a model for the redox-regulated oligomeric state proposed to control enzyme activity []. Alkyl hydroperoxide reductase (AhpC) is responsible for directly reducing organic hyperoxides in its reduced dithiol form. Thiol specific antioxidant (TSA) is a physiologically important antioxidant which constitutes an enzymatic defence against sulphur-containing radicals. This family contains AhpC and TSA, as well as related proteins.; GO: 0016209 antioxidant activity, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1QMV_A 1PRX_B 3HJP_C 3HA9_A 2V41_G 2V32_C 2V2G_C 3LWA_A 3IA1_B 1ZYE_G ....

>PRK00522 tpx lipid hydroperoxide peroxidase; Provisional

Probab=99.96  E-value=9.8e-28  Score=183.94  Aligned_cols=147  Identities=27%  Similarity=0.370  Sum_probs=126.4

Q ss_pred             ccCCCCCCCCCeEEeCCCCCeeecCCcCCCcEEEEEEcCCCChhhHHHHHHHHHHHHHHHHcCcEEEEEeCCCHHHHHHH
Q 028030           66 AKVSKGQAPPSFTLKDQEGRNVSLSKFKGKPVVVYFYPADETPGCTKQACAFRDSYEKFKKAGAEVIGISGDDSSSHKAF  145 (215)
Q Consensus        66 ~~~~~g~~~P~f~l~~~~g~~~~l~~~~gk~~ll~f~~a~~C~~C~~~~~~l~~l~~~~~~~~v~vv~vs~d~~~~~~~~  145 (215)
                      ..+.+|+++|+|++.+.+|+.+++++++||++||+||++.||++|..+++.|+++++++.  |++|++||.|+++.+++|
T Consensus        16 ~~~~~G~~~P~f~l~~~~g~~v~l~~~~Gk~vvl~f~~s~~cp~C~~e~~~l~~~~~~~~--~~~vv~vs~D~~~~~~~f   93 (167)
T PRK00522         16 SLPQVGDKAPDFTLVANDLSDVSLADFAGKRKVLNIFPSIDTGVCATSVRKFNQEAAELD--NTVVLCISADLPFAQKRF   93 (167)
T ss_pred             CCCCCCCCCCCeEEEcCCCcEEehHHhCCCEEEEEEEcCCCCCccHHHHHHHHHHHHHcC--CcEEEEEeCCCHHHHHHH
Confidence            345789999999999999999999999999999999944449999999999999999983  899999999999999999


Q ss_pred             HHHcCCC-eEEEEc-CChhHHHHhCCCccC--CCCCCccEEEEEcCCCcEEEEEeC-CCCCCccHHHHHHHHhc
Q 028030          146 AKKYRLP-YTLLSD-EGNKVRKEWGVPADF--FGSLPGRQTYILDKNGVVQLIYNN-QFQPEKHIDETLKFLQS  214 (215)
Q Consensus       146 ~~~~~~~-~~~~~d-~~~~~~~~~g~~~~~--~g~~p~~~~~lid~~G~v~~~~~g-~~~~~~~~~~il~~l~~  214 (215)
                      +++++++ ++++.| .++.+.+.||+....  ...++.|++||||++|+|++.+.+ .......+++++++|++
T Consensus        94 ~~~~~~~~~~~lsD~~~~~~~~~~gv~~~~~~~~g~~~r~tfvId~~G~I~~~~~~~~~~~~~~~~~~l~~l~~  167 (167)
T PRK00522         94 CGAEGLENVITLSDFRDHSFGKAYGVAIAEGPLKGLLARAVFVLDENNKVVYSELVPEITNEPDYDAALAALKA  167 (167)
T ss_pred             HHhCCCCCceEeecCCccHHHHHhCCeecccccCCceeeEEEEECCCCeEEEEEECCCcCCCCCHHHHHHHhhC
Confidence            9999997 789999 456999999997532  122456799999999999999975 34555789999999874

>PRK13191 putative peroxiredoxin; Provisional

Probab=99.96  E-value=8.6e-28  Score=190.87  Aligned_cols=147  Identities=29%  Similarity=0.508  Sum_probs=126.1

Q ss_pred             cCCCCCCCCCeEEeCCCCCeeec-CCcCCCcEEEEEEcCCCChhhHHHHHHHHHHHHHHHHcCcEEEEEeCCCHHHHHHH
Q 028030           67 KVSKGQAPPSFTLKDQEGRNVSL-SKFKGKPVVVYFYPADETPGCTKQACAFRDSYEKFKKAGAEVIGISGDDSSSHKAF  145 (215)
Q Consensus        67 ~~~~g~~~P~f~l~~~~g~~~~l-~~~~gk~~ll~f~~a~~C~~C~~~~~~l~~l~~~~~~~~v~vv~vs~d~~~~~~~~  145 (215)
                      .+.+|+++|+|++.+.+|+ +.+ ++++||++||+||+++||+.|..+++.|++++++|+++|++|++||+|+.+.+++|
T Consensus         6 ~~~iG~~aPdF~l~~~~G~-~~l~~~~~GK~vvLff~pa~ftpvC~tEl~~l~~~~~ef~~~g~~VigvS~Ds~~~h~aw   84 (215)
T PRK13191          6 IPLIGEKFPEMEVITTHGK-IKLPDDYKGRWFVLFSHPGDFTPVCTTEFYSFAKKYEEFKKLNTELIGLSVDSNISHIEW   84 (215)
T ss_pred             cccCCCcCCCCEeecCCCC-EEcHHHhCCCcEEEEEeCCCCCCcCHHHHHHHHHHHHHHHHCCCEEEEEECCCHHHHHHH
Confidence            4568999999999999997 455 55799999987777999999999999999999999999999999999999887777


Q ss_pred             HH------HcCCCeEEEEcCChhHHHHhCCCccCCCCCCccEEEEEcCCCcEEEEEeCCCCCCccHHHHHHHHhc
Q 028030          146 AK------KYRLPYTLLSDEGNKVRKEWGVPADFFGSLPGRQTYILDKNGVVQLIYNNQFQPEKHIDETLKFLQS  214 (215)
Q Consensus       146 ~~------~~~~~~~~~~d~~~~~~~~~g~~~~~~g~~p~~~~~lid~~G~v~~~~~g~~~~~~~~~~il~~l~~  214 (215)
                      .+      ..+++||++.|.++++.+.||+.....+..+.|.+||||++|+|++.+.+......+++++|+.|++
T Consensus        85 ~~~~~~~~~~~i~fPllsD~~~~ia~~ygv~~~~~~~~~~r~tfIID~~G~Ir~~~~~~~~~gr~~~eilr~l~a  159 (215)
T PRK13191         85 VMWIEKNLKVEVPFPIIADPMGNVAKRLGMIHAESSTATVRAVFIVDDKGTVRLILYYPMEIGRNIDEILRAIRA  159 (215)
T ss_pred             HhhHHHhcCCCCceEEEECCchHHHHHcCCcccccCCceeEEEEEECCCCEEEEEEecCCCCCCCHHHHHHHHHH
Confidence            64      2468899999999999999999753221233459999999999999988877778899999998863

>cd03017 PRX_BCP Peroxiredoxin (PRX) family, Bacterioferritin comigratory protein (BCP) subfamily; composed of thioredoxin-dependent thiol peroxidases, widely expressed in pathogenic bacteria, that protect cells against toxicity from reactive oxygen species by reducing and detoxifying hydroperoxides

Probab=99.96  E-value=4.7e-28  Score=180.09  Aligned_cols=135  Identities=50%  Similarity=0.896  Sum_probs=121.6

Q ss_pred             CCCCCeEEeCCCCCeeecCCcCCCcEEEEEEcCCCChhhHHHHHHHHHHHHHHHHcCcEEEEEeCCCHHHHHHHHHHcCC
Q 028030           72 QAPPSFTLKDQEGRNVSLSKFKGKPVVVYFYPADETPGCTKQACAFRDSYEKFKKAGAEVIGISGDDSSSHKAFAKKYRL  151 (215)
Q Consensus        72 ~~~P~f~l~~~~g~~~~l~~~~gk~~ll~f~~a~~C~~C~~~~~~l~~l~~~~~~~~v~vv~vs~d~~~~~~~~~~~~~~  151 (215)
                      +++|+|+++|.+|+.+++++++||++||+||+++||+.|..+++.|++++++++++|+++|+|+.|+++.+++|++++++
T Consensus         1 ~~~p~f~l~~~~g~~~~l~~~~gk~~ll~f~~~~~cp~C~~~~~~l~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~   80 (140)
T cd03017           1 DKAPDFTLPDQDGETVSLSDLRGKPVVLYFYPKDDTPGCTKEACDFRDLYEEFKALGAVVIGVSPDSVESHAKFAEKYGL   80 (140)
T ss_pred             CCCCCccccCCCCCEEeHHHhCCCcEEEEEeCCCCCCchHHHHHHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHhCC
Confidence            47899999999999999999999999999998899999999999999999999998999999999999999999999999


Q ss_pred             CeEEEEcCChhHHHHhCCCccC----CCCCCccEEEEEcCCCcEEEEEeCCCCCCccHHHHH
Q 028030          152 PYTLLSDEGNKVRKEWGVPADF----FGSLPGRQTYILDKNGVVQLIYNNQFQPEKHIDETL  209 (215)
Q Consensus       152 ~~~~~~d~~~~~~~~~g~~~~~----~g~~p~~~~~lid~~G~v~~~~~g~~~~~~~~~~il  209 (215)
                      +|+++.|.++++.+.||+....    .+..|  ++||||++|+|++.+.|.. .+..+++++
T Consensus        81 ~~~~l~D~~~~~~~~~gv~~~~~~~~~~~~p--~~~lid~~G~v~~~~~g~~-~~~~~~~~~  139 (140)
T cd03017          81 PFPLLSDPDGKLAKAYGVWGEKKKKYMGIER--STFLIDPDGKIVKVWRKVK-PKGHAEEVL  139 (140)
T ss_pred             CceEEECCccHHHHHhCCccccccccCCcce--eEEEECCCCEEEEEEecCC-ccchHHHHh
Confidence            9999999999999999998621    11125  9999999999999998865 566677765

The protein was named BCP based on its electrophoretic mobility before its function was known. BCP shows substrate selectivity toward fatty acid hydroperoxides rather than hydrogen peroxide or alkyl hydroperoxides. BCP contains the peroxidatic cysteine but appears not to possess a resolving cysteine (some sequences, not all, contain a second cysteine but its role is still unknown). Unlike other PRXs, BCP exists as a monomer. The plant homolog of BCP is PRX Q, which is expressed only in leaves and is cellularly localized in the chloroplasts and the guard cells of stomata. Also included in this subfamily is the fungal nuclear protein, Dot5p (for disrupter of telomere silencing protein 5), w

>PRK13190 putative peroxiredoxin; Provisional

Probab=99.96  E-value=1.6e-27  Score=188.04  Aligned_cols=145  Identities=33%  Similarity=0.610  Sum_probs=124.7

Q ss_pred             CCCCCCCCCeEEeCCCCCeeecCCcCCCcEEEEEEcCCCChhhHHHHHHHHHHHHHHHHcCcEEEEEeCCCHHHHHHHHH
Q 028030           68 VSKGQAPPSFTLKDQEGRNVSLSKFKGKPVVVYFYPADETPGCTKQACAFRDSYEKFKKAGAEVIGISGDDSSSHKAFAK  147 (215)
Q Consensus        68 ~~~g~~~P~f~l~~~~g~~~~l~~~~gk~~ll~f~~a~~C~~C~~~~~~l~~l~~~~~~~~v~vv~vs~d~~~~~~~~~~  147 (215)
                      +.+|+.+|+|++.+.+| .+++++++||++||+||+++||++|..+++.|++++++++++|++||+||.|+.+.+++|++
T Consensus         2 ~~vG~~aP~F~~~~~~g-~v~l~d~~gk~vvL~~~p~~~cp~C~~El~~l~~~~~~f~~~~~~vi~vS~D~~~~~~~w~~   80 (202)
T PRK13190          2 VKLGQKAPDFTVNTTKG-PIDLSKYKGKWVLLFSHPADFTPVCTTEFIAFSRRYEDFKKLGVELVGLSVDSIYSHIAWLR   80 (202)
T ss_pred             CCCCCCCCCcEEecCCC-cEeHHHhCCCEEEEEEEcCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHH
Confidence            57899999999999888 69999999999888766699999999999999999999999999999999999988777765


Q ss_pred             ----HcC--CCeEEEEcCChhHHHHhCCCccCCCCCCccEEEEEcCCCcEEEEEeCCCCCCccHHHHHHHHhc
Q 028030          148 ----KYR--LPYTLLSDEGNKVRKEWGVPADFFGSLPGRQTYILDKNGVVQLIYNNQFQPEKHIDETLKFLQS  214 (215)
Q Consensus       148 ----~~~--~~~~~~~d~~~~~~~~~g~~~~~~g~~p~~~~~lid~~G~v~~~~~g~~~~~~~~~~il~~l~~  214 (215)
                          +++  ++||++.|+++++++.||+.....| .+.|.+||||++|+|++...+......+++++++.|+.
T Consensus        81 ~~~~~~g~~~~fPll~D~~~~ia~~ygv~~~~~g-~~~p~~fiId~~G~I~~~~~~~~~~gr~~~ellr~l~~  152 (202)
T PRK13190         81 DIEERFGIKIPFPVIADIDKELAREYNLIDENSG-ATVRGVFIIDPNQIVRWMIYYPAETGRNIDEIIRITKA  152 (202)
T ss_pred             hHHHhcCCCceEEEEECCChHHHHHcCCccccCC-cEEeEEEEECCCCEEEEEEEeCCCCCCCHHHHHHHHHH
Confidence                455  5799999999999999999654333 23349999999999999887666666788999988764

>PTZ00137 2-Cys peroxiredoxin; Provisional

Probab=99.95  E-value=2.7e-27  Score=191.72  Aligned_cols=147  Identities=29%  Similarity=0.466  Sum_probs=128.8

Q ss_pred             ccCCCCCCCCCeEEeC-CCC--CeeecCCc-CCCcEEEEEEcCCCChhhHHHHHHHHHHHHHHHHcCcEEEEEeCCCHHH
Q 028030           66 AKVSKGQAPPSFTLKD-QEG--RNVSLSKF-KGKPVVVYFYPADETPGCTKQACAFRDSYEKFKKAGAEVIGISGDDSSS  141 (215)
Q Consensus        66 ~~~~~g~~~P~f~l~~-~~g--~~~~l~~~-~gk~~ll~f~~a~~C~~C~~~~~~l~~l~~~~~~~~v~vv~vs~d~~~~  141 (215)
                      ..+.+|+++|+|++.+ .+|  +.++++++ +||++||+||+++||++|..+++.|++++++++++|++|++||.|+++.
T Consensus        66 ~~~~vGd~aPdF~l~~~~~g~~~~vsLsd~~kgk~vVL~FyPa~ftpvCt~El~~l~~~~~ef~~~gv~VigIS~Ds~~~  145 (261)
T PTZ00137         66 TSSLVGKLMPSFKGTALLNDDLVQFNSSDYFKDSYGLLVFYPLDFTFVCPSELLGFSERLKEFEERGVKVLGVSVDSPFS  145 (261)
T ss_pred             ccccCCCCCCCCEeecccCCCceEEeHHHHcCCCeEEEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCHHH
Confidence            4557999999999987 455  46899998 8999999999999999999999999999999999999999999999988


Q ss_pred             HHHHHHH-------cCCCeEEEEcCChhHHHHhCCCccCCCCCCccEEEEEcCCCcEEEEEeCCCCCCccHHHHHHHHhc
Q 028030          142 HKAFAKK-------YRLPYTLLSDEGNKVRKEWGVPADFFGSLPGRQTYILDKNGVVQLIYNNQFQPEKHIDETLKFLQS  214 (215)
Q Consensus       142 ~~~~~~~-------~~~~~~~~~d~~~~~~~~~g~~~~~~g~~p~~~~~lid~~G~v~~~~~g~~~~~~~~~~il~~l~~  214 (215)
                      +++|.+.       .+++||++.|.+++++++||+.... | .+.|.+||||++|+|++.+........+++++++.|+.
T Consensus       146 h~aw~~~~~~~~g~~~l~fPlLsD~~~~iakayGv~~~~-g-~a~R~tFIID~dG~I~~~~~~~~~~gr~v~eiLr~l~a  223 (261)
T PTZ00137        146 HKAWKELDVRQGGVSPLKFPLFSDISREVSKSFGLLRDE-G-FSHRASVLVDKAGVVKHVAVYDLGLGRSVDETLRLFDA  223 (261)
T ss_pred             HHHHHhhhhhhccccCcceEEEEcCChHHHHHcCCCCcC-C-ceecEEEEECCCCEEEEEEEeCCCCCCCHHHHHHHHHH
Confidence            8888864       5788999999999999999997532 2 33449999999999999997777778899999998863

>cd03014 PRX_Atyp2cys Peroxiredoxin (PRX) family, Atypical 2-cys PRX subfamily; composed of PRXs containing peroxidatic and resolving cysteines, similar to the homodimeric thiol specific antioxidant (TSA) protein also known as TRX-dependent thiol peroxidase (Tpx)

Probab=99.95  E-value=2.6e-27  Score=177.00  Aligned_cols=139  Identities=29%  Similarity=0.420  Sum_probs=120.4

Q ss_pred             CCCCCCCCeEEeCCCCCeeecCCcCCCcEEEEEEcCCCChhhHHHHHHHHHHHHHHHHcCcEEEEEeCCCHHHHHHHHHH
Q 028030           69 SKGQAPPSFTLKDQEGRNVSLSKFKGKPVVVYFYPADETPGCTKQACAFRDSYEKFKKAGAEVIGISGDDSSSHKAFAKK  148 (215)
Q Consensus        69 ~~g~~~P~f~l~~~~g~~~~l~~~~gk~~ll~f~~a~~C~~C~~~~~~l~~l~~~~~~~~v~vv~vs~d~~~~~~~~~~~  148 (215)
                      ++|+++|+|++.+.+|+.+++++++||++||+||++.||++|+.+++.|++++++++  |+.||+|+.|+.+.+++|.++
T Consensus         1 ~~G~~aP~f~l~~~~g~~~~l~~~~gk~vvl~f~~~~~c~~C~~e~~~l~~~~~~~~--~~~vi~Is~d~~~~~~~~~~~   78 (143)
T cd03014           1 KVGDKAPDFTLVTSDLSEVSLADFAGKVKVISVFPSIDTPVCATQTKRFNKEAAKLD--NTVVLTISADLPFAQKRWCGA   78 (143)
T ss_pred             CCCCCCCCcEEECCCCcEEeHHHhCCCeEEEEEEcCCCCCcCHHHHHHHHHHHHhcC--CCEEEEEECCCHHHHHHHHHh
Confidence            368999999999999999999999999999999955558999999999999999984  899999999999999999999


Q ss_pred             cCC-CeEEEEcCC-hhHHHHhCCCccCCCCCCccEEEEEcCCCcEEEEEeCC-CCCCccHHHHHH
Q 028030          149 YRL-PYTLLSDEG-NKVRKEWGVPADFFGSLPGRQTYILDKNGVVQLIYNNQ-FQPEKHIDETLK  210 (215)
Q Consensus       149 ~~~-~~~~~~d~~-~~~~~~~g~~~~~~g~~p~~~~~lid~~G~v~~~~~g~-~~~~~~~~~il~  210 (215)
                      ++. +|+++.|.. +++.+.||+..+..| ++.|++||||++|+|++.+.|. .....+++++++
T Consensus        79 ~~~~~~~~l~D~~~~~~~~~~gv~~~~~~-~~~~~~~iid~~G~I~~~~~~~~~~~~~~~~~~~~  142 (143)
T cd03014          79 EGVDNVTTLSDFRDHSFGKAYGVLIKDLG-LLARAVFVIDENGKVIYVELVPEITDEPDYEAALA  142 (143)
T ss_pred             cCCCCceEeecCcccHHHHHhCCeeccCC-ccceEEEEEcCCCeEEEEEECCCcccCCCHHHHhh
Confidence            997 799999986 999999999754333 3345999999999999999874 344567777764

Tpx is a bacterial periplasmic peroxidase which differs from other PRXs in that it shows substrate specificity toward alkyl hydroperoxides over hydrogen peroxide. As with all other PRXs, the peroxidatic cysteine (N-terminal) of Tpx is oxidized into a sulfenic acid intermediate upon reaction with peroxides. Tpx is able to resolve this intermediate by forming an intramolecular disulfide bond with a conserved C-terminal cysteine (the resolving cysteine), which can then be reduced by thioredoxin. This differs from the typical 2-cys PRX which resolves the oxidized cysteine by forming an intermolecular disulfide bond with the resolving cysteine from the other subunit of the homodimer. Atypical 2-cys PRX homodimers have a loop-based

>KOG0855 consensus Alkyl hydroperoxide reductase, thiol specific antioxidant and related enzymes [Posttranslational modification, protein turnover, chaperones]

Probab=99.95  E-value=2.6e-27  Score=174.49  Aligned_cols=204  Identities=58%  Similarity=0.914  Sum_probs=177.9

Q ss_pred             eeccCCCCCCCCCCCCCCCCCCCCceecccCCCccccccCccccccccCCCCCCccccccccccCCCCCCCCCeEEeCCC
Q 028030            4 SLNLPKHTLPSFLPTQTPRTPPSQSLAIPSKSSSQSQFFGLRFSFSSNLPIPSSTSFKTSISAKVSKGQAPPSFTLKDQE   83 (215)
Q Consensus         4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~P~f~l~~~~   83 (215)
                      ..+.|.|+..-.++.++++.+.+.+ .++.++ +.+.|++..+.........++.      .-.+++|+.+|||+|.|.|
T Consensus         7 rstr~a~t~~~~l~~~~tlvp~t~p-~vpkK~-~ks~~~~~~~~~~~~~s~~Ssd------s~~v~~Gd~iPD~tL~ded   78 (211)
T KOG0855|consen    7 RSTRCAHTTLRTLPLRKTLVPKTQP-SVPKKS-SKSNFFGSTLTHSSYISPVSSD------SLKVNKGDAIPDFTLKDED   78 (211)
T ss_pred             chhhhHhhhhhcccccccccccccc-cccccc-cccCcccccccceeeecccccc------ceeeecCCcCCCcccccCC
Confidence            3466778888899999998877764 455555 6788998877766555444222      1378899999999999999


Q ss_pred             CCeeecCCcCC-CcEEEEEEcCCCChhhHHHHHHHHHHHHHHHHcCcEEEEEeCCCHHHHHHHHHHcCCCeEEEEcCChh
Q 028030           84 GRNVSLSKFKG-KPVVVYFYPADETPGCTKQACAFRDSYEKFKKAGAEVIGISGDDSSSHKAFAKKYRLPYTLLSDEGNK  162 (215)
Q Consensus        84 g~~~~l~~~~g-k~~ll~f~~a~~C~~C~~~~~~l~~l~~~~~~~~v~vv~vs~d~~~~~~~~~~~~~~~~~~~~d~~~~  162 (215)
                      |+.++|.++.| |++|++|||+...|.|.++...|+..|+++++.+.+|+|++.|+....++|..+++++|.++.|+.++
T Consensus        79 g~sisLkkit~nk~vV~f~YP~asTPGCTkQaCgFRDnY~k~kka~aeV~GlS~D~s~sqKaF~sKqnlPYhLLSDpk~e  158 (211)
T KOG0855|consen   79 GKSISLKKITGNKPVVLFFYPAASTPGCTKQACGFRDNYEKFKKAGAEVIGLSGDDSASQKAFASKQNLPYHLLSDPKNE  158 (211)
T ss_pred             CCeeeeeeecCCCcEEEEEeccCCCCCcccccccccccHHHHhhcCceEEeeccCchHHHHHhhhhccCCeeeecCcchh
Confidence            99999999976 59999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHhCCCccCCCCCCccEEEEEcCCCcEEEEEeCCCCCCccHHHHHHHHhcC
Q 028030          163 VRKEWGVPADFFGSLPGRQTYILDKNGVVQLIYNNQFQPEKHIDETLKFLQSS  215 (215)
Q Consensus       163 ~~~~~g~~~~~~g~~p~~~~~lid~~G~v~~~~~g~~~~~~~~~~il~~l~~s  215 (215)
                      +.+.+|+..+.+|..|.+..|++|++|........++.++..+++.++.|.++
T Consensus       159 ~ik~lGa~k~p~gg~~~Rsh~if~kg~~k~~ik~~~isPevsvd~a~k~~~~~  211 (211)
T KOG0855|consen  159 VIKDLGAPKDPFGGLPGRSHYIFDKGGVKQLIKNNQISPEVSVDEALKFLKAA  211 (211)
T ss_pred             HHHHhCCCCCCCCCcccceEEEEecCCeEEEEEecccCccccHHHHHHHHhcC
Confidence            99999999999999999999999999888888888889999999999988753

>PRK15000 peroxidase; Provisional

Probab=99.95  E-value=4.4e-27  Score=185.02  Aligned_cols=145  Identities=28%  Similarity=0.520  Sum_probs=124.3

Q ss_pred             CCCCCCCCeEEeCCC--CCe---eecCCc-CCCcEEEEEEcCCCChhhHHHHHHHHHHHHHHHHcCcEEEEEeCCCHHHH
Q 028030           69 SKGQAPPSFTLKDQE--GRN---VSLSKF-KGKPVVVYFYPADETPGCTKQACAFRDSYEKFKKAGAEVIGISGDDSSSH  142 (215)
Q Consensus        69 ~~g~~~P~f~l~~~~--g~~---~~l~~~-~gk~~ll~f~~a~~C~~C~~~~~~l~~l~~~~~~~~v~vv~vs~d~~~~~  142 (215)
                      .+|+++|+|++.+..  |+.   .+++++ +||++||+||+++||+.|..+++.|++++++|+++|++||+||.|+.+.+
T Consensus         3 ~vg~~aPdF~~~~~~~~g~~~~~~~l~~~~~gk~vvL~F~p~~~t~vC~~El~~l~~~~~~f~~~g~~vigvS~D~~~~~   82 (200)
T PRK15000          3 LVTRQAPDFTAAAVLGSGEIVDKFNFKQHTNGKTTVLFFWPMDFTFVCPSELIAFDKRYEEFQKRGVEVVGVSFDSEFVH   82 (200)
T ss_pred             cCCCcCCCCEeecccCCCceeeeeeHHHHhCCCEEEEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCHHHH
Confidence            479999999999863  453   455665 89999999998899999999999999999999999999999999999888


Q ss_pred             HHHHHH----cC---CCeEEEEcCChhHHHHhCCCccCCCCCCccEEEEEcCCCcEEEEEeCCCCCCccHHHHHHHHhc
Q 028030          143 KAFAKK----YR---LPYTLLSDEGNKVRKEWGVPADFFGSLPGRQTYILDKNGVVQLIYNNQFQPEKHIDETLKFLQS  214 (215)
Q Consensus       143 ~~~~~~----~~---~~~~~~~d~~~~~~~~~g~~~~~~g~~p~~~~~lid~~G~v~~~~~g~~~~~~~~~~il~~l~~  214 (215)
                      +.|.+.    .+   ++||++.|.++++.+.||+.....| ++.|.+||||++|+|++.+.+......+++++|+.|+.
T Consensus        83 ~~w~~~~~~~~g~~~i~fpllsD~~~~ia~~ygv~~~~~g-~~~r~tfiID~~G~I~~~~~~~~~~gr~~~eilr~l~a  160 (200)
T PRK15000         83 NAWRNTPVDKGGIGPVKYAMVADVKREIQKAYGIEHPDEG-VALRGSFLIDANGIVRHQVVNDLPLGRNIDEMLRMVDA  160 (200)
T ss_pred             HHHHhhHHHhCCccccCceEEECCCcHHHHHcCCccCCCC-cEEeEEEEECCCCEEEEEEecCCCCCCCHHHHHHHHHH
Confidence            888654    33   6899999999999999999754333 23449999999999999999988888899999998863

>cd03016 PRX_1cys Peroxiredoxin (PRX) family, 1-cys PRX subfamily; composed of PRXs containing only one conserved cysteine, which serves as the peroxidatic cysteine

Probab=99.95  E-value=4.5e-27  Score=185.64  Aligned_cols=144  Identities=26%  Similarity=0.474  Sum_probs=124.3

Q ss_pred             CCCCCCCeEEeCCCCCeeecCCcCC-CcEEEEEEcCCCChhhHHHHHHHHHHHHHHHHcCcEEEEEeCCCHHHHHHHHHH
Q 028030           70 KGQAPPSFTLKDQEGRNVSLSKFKG-KPVVVYFYPADETPGCTKQACAFRDSYEKFKKAGAEVIGISGDDSSSHKAFAKK  148 (215)
Q Consensus        70 ~g~~~P~f~l~~~~g~~~~l~~~~g-k~~ll~f~~a~~C~~C~~~~~~l~~l~~~~~~~~v~vv~vs~d~~~~~~~~~~~  148 (215)
                      +|+.+|+|++.+.+|. +++++++| |++||+|++++||+.|..+++.|++++++++++|++|++||.|+.+.+++|.+.
T Consensus         1 vG~~aP~F~~~~~~g~-~~l~d~~g~k~vvlf~~pa~~cp~C~~el~~l~~~~~~f~~~gv~vigvS~D~~~~~~~~~~~   79 (203)
T cd03016           1 LGDTAPNFEADTTHGP-IKFHDYLGDSWGILFSHPADFTPVCTTELGAFAKLAPEFKKRNVKLIGLSVDSVESHIKWIED   79 (203)
T ss_pred             CcCCCCCeEEecCCCc-EeHHHHcCCCEEEEEEecCCCCCcCHHHHHHHHHHHHHHHHcCCEEEEEECCCHHHHHHHHhh
Confidence            5899999999999985 89999988 787776666999999999999999999999999999999999999888888775


Q ss_pred             ------cCCCeEEEEcCChhHHHHhCCCccCCC-CCCccEEEEEcCCCcEEEEEeCCCCCCccHHHHHHHHhc
Q 028030          149 ------YRLPYTLLSDEGNKVRKEWGVPADFFG-SLPGRQTYILDKNGVVQLIYNNQFQPEKHIDETLKFLQS  214 (215)
Q Consensus       149 ------~~~~~~~~~d~~~~~~~~~g~~~~~~g-~~p~~~~~lid~~G~v~~~~~g~~~~~~~~~~il~~l~~  214 (215)
                            .+++||++.|+++.+++.||+.....+ ..+.|.+||||++|+|++.+.+......+++++++.|++
T Consensus        80 i~~~~~~~~~fpil~D~~~~ia~~yg~~~~~~~~~~~~r~~fiID~~G~I~~~~~~~~~~gr~~~ell~~l~~  152 (203)
T cd03016          80 IEEYTGVEIPFPIIADPDREVAKLLGMIDPDAGSTLTVRAVFIIDPDKKIRLILYYPATTGRNFDEILRVVDA  152 (203)
T ss_pred             HHHhcCCCCceeEEECchHHHHHHcCCccccCCCCceeeEEEEECCCCeEEEEEecCCCCCCCHHHHHHHHHH
Confidence                  689999999999999999999743211 123458999999999999998877777788899888764

They are homodimeric thiol-specific antioxidant (TSA) proteins that confer a protective role in cells by reducing and detoxifying hydrogen peroxide, peroxynitrite, and organic hydroperoxides. As with all other PRXs, a cysteine sulfenic acid intermediate is formed upon reaction of 1-cys PRX with its substrates. Having no resolving cysteine, the oxidized enzyme is resolved by an external small-molecule or protein reductant such as thioredoxin or glutaredoxin. Similar to typical 2-cys PRX, 1-cys PRX forms a functional dimeric unit with a B-type interface, as well as a decameric structure which is stabilized in the reduced form of the enzyme. Other oligomeric forms, tetramers and hexamers, have also been reported. Mammalian 1-cys PRX is localized cellularly in the cytosol and is expressed at high levels in brain, eye, testes an

>PRK13189 peroxiredoxin; Provisional

Probab=99.95  E-value=1.3e-26  Score=184.99  Aligned_cols=147  Identities=27%  Similarity=0.488  Sum_probs=126.1

Q ss_pred             cCCCCCCCCCeEEeCCCCCeeecCCc-CCCcEEEEEEcCCCChhhHHHHHHHHHHHHHHHHcCcEEEEEeCCCHHHHHHH
Q 028030           67 KVSKGQAPPSFTLKDQEGRNVSLSKF-KGKPVVVYFYPADETPGCTKQACAFRDSYEKFKKAGAEVIGISGDDSSSHKAF  145 (215)
Q Consensus        67 ~~~~g~~~P~f~l~~~~g~~~~l~~~-~gk~~ll~f~~a~~C~~C~~~~~~l~~l~~~~~~~~v~vv~vs~d~~~~~~~~  145 (215)
                      .+.+|+.+|+|++.+.+|+ ++++++ +||++||+||+++||+.|..+++.|++++++|+++|++||+||.|+.+.+++|
T Consensus         8 ~~~vG~~aPdF~~~~~~g~-~~l~d~~~Gk~vvL~f~pa~fcpvC~tEl~~l~~~~~ef~~~~v~VigvS~D~~~~h~aw   86 (222)
T PRK13189          8 MPLIGDKFPEFEVKTTHGP-IKLPDDYKGKWFVLFSHPADFTPVCTTEFVAFQKRYDEFRELNTELIGLSIDQVFSHIKW   86 (222)
T ss_pred             cccCCCcCCCcEeEcCCCC-EeeHHHhCCCeEEEEEeCCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEECCCHHHHHHH
Confidence            4678999999999999996 677774 99998887777999999999999999999999999999999999999988888


Q ss_pred             HHH------cCCCeEEEEcCChhHHHHhCCCccCCCCCCccEEEEEcCCCcEEEEEeCCCCCCccHHHHHHHHhc
Q 028030          146 AKK------YRLPYTLLSDEGNKVRKEWGVPADFFGSLPGRQTYILDKNGVVQLIYNNQFQPEKHIDETLKFLQS  214 (215)
Q Consensus       146 ~~~------~~~~~~~~~d~~~~~~~~~g~~~~~~g~~p~~~~~lid~~G~v~~~~~g~~~~~~~~~~il~~l~~  214 (215)
                      ++.      .+++||++.|.++++++.||+.....+....|.+||||++|+|++.+.+......+.+++++.|++
T Consensus        87 ~~~~~~~~g~~i~fPllsD~~~~ia~~ygv~~~~~~~~~~r~tfIID~~G~Ir~~~~~~~~~gr~~~eilr~l~a  161 (222)
T PRK13189         87 VEWIKEKLGVEIEFPIIADDRGEIAKKLGMISPGKGTNTVRAVFIIDPKGIIRAILYYPQEVGRNMDEILRLVKA  161 (222)
T ss_pred             HHhHHHhcCcCcceeEEEcCccHHHHHhCCCccccCCCceeEEEEECCCCeEEEEEecCCCCCCCHHHHHHHHHH
Confidence            874      357899999999999999999743322123349999999999999988777777888999988863

>PTZ00056 glutathione peroxidase; Provisional

Probab=99.95  E-value=7.7e-27  Score=183.53  Aligned_cols=143  Identities=15%  Similarity=0.237  Sum_probs=112.7

Q ss_pred             CCCCCCCCCeEEeCCCCCeeecCCcCCCcEEEEEEcCCCChhhHHHHHHHHHHHHHHHHcCcEEEEEeC--------CCH
Q 028030           68 VSKGQAPPSFTLKDQEGRNVSLSKFKGKPVVVYFYPADETPGCTKQACAFRDSYEKFKKAGAEVIGISG--------DDS  139 (215)
Q Consensus        68 ~~~g~~~P~f~l~~~~g~~~~l~~~~gk~~ll~f~~a~~C~~C~~~~~~l~~l~~~~~~~~v~vv~vs~--------d~~  139 (215)
                      -..|..+|+|+++|.+|+.+++++++||++||+|| ++||++|..++|.|++++++|+++|++||+|+.        |+.
T Consensus        13 ~~~~~~~pdf~l~d~~G~~vsL~~~kGkvvlv~fw-AswC~~C~~e~p~L~~l~~~~~~~g~~vvgv~~~~~~~~e~d~~   91 (199)
T PTZ00056         13 DELRKSIYDYTVKTLEGTTVPMSSLKNKVLMITNS-ASKCGLTKKHVDQMNRLHSVFNPLGLEILAFPTSQFLNQEFPNT   91 (199)
T ss_pred             hhcCCCCCceEEECCCCCEEeHHHhCCCEEEEEEE-CCCCCChHHHHHHHHHHHHHHhcCceEEEEecchhccCCCCCCH
Confidence            35678999999999999999999999999999999 999999999999999999999999999999986        567


Q ss_pred             HHHHHHHHHcCCCeEEEEcC------ChhHHH--------HhCCCccCCCCCC-ccEEEEEcCCCcEEEEEeCCCCCCcc
Q 028030          140 SSHKAFAKKYRLPYTLLSDE------GNKVRK--------EWGVPADFFGSLP-GRQTYILDKNGVVQLIYNNQFQPEKH  204 (215)
Q Consensus       140 ~~~~~~~~~~~~~~~~~~d~------~~~~~~--------~~g~~~~~~g~~p-~~~~~lid~~G~v~~~~~g~~~~~~~  204 (215)
                      +++++|+++++++|+++.|.      ...+.+        .|+..+...+ ++ .+++||||++|+|+.++.|..+.+..
T Consensus        92 e~~~~f~~~~~~~fpvl~d~~v~g~~~~~l~~~l~~~~~~~~d~~~~~~~-i~~~~~tflID~~G~iv~~~~g~~~~~~l  170 (199)
T PTZ00056         92 KDIRKFNDKNKIKYNFFEPIEVNGENTHELFKFLKANCDSMHDENGTLKA-IGWNFGKFLVNKSGNVVAYFSPRTEPLEL  170 (199)
T ss_pred             HHHHHHHHHcCCCceeeeeeeccCCccCHHHHHHHHhCcccccccccCCc-cCCCCEEEEECCCCcEEEEeCCCCCHHHH
Confidence            89999999999999998752      223332        2333221111 22 24799999999999999886654443


Q ss_pred             HHHHHHHH
Q 028030          205 IDETLKFL  212 (215)
Q Consensus       205 ~~~il~~l  212 (215)
                      .+.+.+++
T Consensus       171 ~~~I~~ll  178 (199)
T PTZ00056        171 EKKIAELL  178 (199)
T ss_pred             HHHHHHHH
Confidence            33344433

>PTZ00253 tryparedoxin peroxidase; Provisional

Probab=99.95  E-value=1.3e-26  Score=182.49  Aligned_cols=147  Identities=27%  Similarity=0.488  Sum_probs=127.6

Q ss_pred             cCCCCCCCCCeEEeC----CCCCeeecCCcCCCcEEEEEEcCCCChhhHHHHHHHHHHHHHHHHcCcEEEEEeCCCHHHH
Q 028030           67 KVSKGQAPPSFTLKD----QEGRNVSLSKFKGKPVVVYFYPADETPGCTKQACAFRDSYEKFKKAGAEVIGISGDDSSSH  142 (215)
Q Consensus        67 ~~~~g~~~P~f~l~~----~~g~~~~l~~~~gk~~ll~f~~a~~C~~C~~~~~~l~~l~~~~~~~~v~vv~vs~d~~~~~  142 (215)
                      .+.+|+++|+|++.+    .+|+++++++++||++||+||+++||+.|..+++.|++++++|+++|++||+||.|+.+..
T Consensus         5 ~~~~G~~aPdF~~~~~~~~~~~~~v~l~d~~Gk~~lL~F~p~~~~~~C~~e~~~l~~~~~~f~~~g~~vv~IS~d~~~~~   84 (199)
T PTZ00253          5 DAKINHPAPSFEEVALMPNGSFKKISLSSYKGKWVVLFFYPLDFTFVCPTEIIQFSDSVKRFNELNCEVLACSMDSEYAH   84 (199)
T ss_pred             ccccCCcCCCCEeeccccCCCCcEEeHHHHCCCEEEEEEEcCCCCCcCHHHHHHHHHHHHHHHHcCCEEEEEeCCCHHHH
Confidence            357899999999765    5678999999999999999999999999999999999999999999999999999999887


Q ss_pred             HHHHHHc-------CCCeEEEEcCChhHHHHhCCCccCCCCCCccEEEEEcCCCcEEEEEeCCCCCCccHHHHHHHHhc
Q 028030          143 KAFAKKY-------RLPYTLLSDEGNKVRKEWGVPADFFGSLPGRQTYILDKNGVVQLIYNNQFQPEKHIDETLKFLQS  214 (215)
Q Consensus       143 ~~~~~~~-------~~~~~~~~d~~~~~~~~~g~~~~~~g~~p~~~~~lid~~G~v~~~~~g~~~~~~~~~~il~~l~~  214 (215)
                      .+|....       +++||++.|+++++.+.||+.....| ++.|.+||||++|+|+..+.+......+++++++.|+.
T Consensus        85 ~~~~~~~~~~~~~~~~~fpll~D~~~~ia~~ygv~~~~~g-~~~r~~fiID~~G~i~~~~~~~~~~~r~~~e~l~~l~a  162 (199)
T PTZ00253         85 LQWTLQERKKGGLGTMAIPMLADKTKSIARSYGVLEEEQG-VAYRGLFIIDPKGMLRQITVNDMPVGRNVEEVLRLLEA  162 (199)
T ss_pred             HHHHhChHhhCCccccccceEECcHhHHHHHcCCcccCCC-ceEEEEEEECCCCEEEEEEecCCCCCCCHHHHHHHHHh
Confidence            7775421       47899999999999999999754333 33449999999999999998877778899999998864

>cd02971 PRX_family Peroxiredoxin (PRX) family; composed of the different classes of PRXs including many proteins originally known as bacterioferritin comigratory proteins (BCP), based on their electrophoretic mobility before their function was identified

Probab=99.94  E-value=3.9e-26  Score=169.68  Aligned_cols=135  Identities=44%  Similarity=0.734  Sum_probs=118.8

Q ss_pred             CCCCeEEeCCCCCeeecCCcCCCcEEEEEEcCCCChhhHHHHHHHHHHHHHHHHcCcEEEEEeCCCHHHHHHHHHHc-CC
Q 028030           73 APPSFTLKDQEGRNVSLSKFKGKPVVVYFYPADETPGCTKQACAFRDSYEKFKKAGAEVIGISGDDSSSHKAFAKKY-RL  151 (215)
Q Consensus        73 ~~P~f~l~~~~g~~~~l~~~~gk~~ll~f~~a~~C~~C~~~~~~l~~l~~~~~~~~v~vv~vs~d~~~~~~~~~~~~-~~  151 (215)
                      .+|+|++.|.+|+.+++++++||++||+||++.||+.|..+++.|+++++++++.++++|+|+.|+++.+++|++++ +.
T Consensus         1 ~~p~f~l~~~~g~~~~l~~~~gk~~ll~f~~~~~c~~C~~~~~~l~~~~~~~~~~~~~~i~is~d~~~~~~~~~~~~~~~   80 (140)
T cd02971           1 KAPDFTLPATDGGEVSLSDFKGKWVVLFFYPKDFTPVCTTELCAFRDLAEEFAKGGAEVLGVSVDSPFSHKAWAEKEGGL   80 (140)
T ss_pred             CCCCceeccCCCcEEehHHhCCCeEEEEEeCCCCCCcCHHHHHHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHhcccCC
Confidence            47999999999999999999999999999989999999999999999999998889999999999999999999999 99


Q ss_pred             CeEEEEcCChhHHHHhCCCccCC--CCCCccEEEEEcCCCcEEEEEeCCCCCCccHHH
Q 028030          152 PYTLLSDEGNKVRKEWGVPADFF--GSLPGRQTYILDKNGVVQLIYNNQFQPEKHIDE  207 (215)
Q Consensus       152 ~~~~~~d~~~~~~~~~g~~~~~~--g~~p~~~~~lid~~G~v~~~~~g~~~~~~~~~~  207 (215)
                      +|+++.|+++.+.+.||+.....  +..+.|++||||++|+|++.+.+........+.
T Consensus        81 ~~~~l~D~~~~~~~~~g~~~~~~~~~~~~~p~~~lid~~g~i~~~~~~~~~~~~~~~~  138 (140)
T cd02971          81 NFPLLSDPDGEFAKAYGVLIEKSAGGGLAARATFIIDPDGKIRYVEVEPLPTGRNAEE  138 (140)
T ss_pred             CceEEECCChHHHHHcCCccccccccCceeEEEEEECCCCcEEEEEecCCCCCcChHh
Confidence            99999999999999999986321  112344899999999999999987654444443

PRXs are thiol-specific antioxidant (TSA) proteins also known as TRX peroxidases and alkyl hydroperoxide reductase C22 (AhpC) proteins. They confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either TRX, glutathione, trypanothione and AhpF. They are distinct from other peroxidases in that they have no cofactors such as metals or prosthetic groups. The first step of catalysis, common to all PRXs, is the nucleophilic attack by the catalytic cysteine (also known as the peroxidatic cysteine) on the peroxide leading to cleavage of the oxygen-oxygen bond and the formation of a

>TIGR02540 gpx7 putative glutathione peroxidase Gpx7

Probab=99.94  E-value=1.2e-26  Score=175.40  Aligned_cols=127  Identities=24%  Similarity=0.342  Sum_probs=103.9

Q ss_pred             CCCeEEeCCCCCeeecCCcCCCcEEEEEEcCCCChhhHHHHHHHHHHHHHHHHcCcEEEEEeC--------CCHHHHHHH
Q 028030           74 PPSFTLKDQEGRNVSLSKFKGKPVVVYFYPADETPGCTKQACAFRDSYEKFKKAGAEVIGISG--------DDSSSHKAF  145 (215)
Q Consensus        74 ~P~f~l~~~~g~~~~l~~~~gk~~ll~f~~a~~C~~C~~~~~~l~~l~~~~~~~~v~vv~vs~--------d~~~~~~~~  145 (215)
                      +.+|++.|.+|+.+++++++||++||+|| ++||++|..++|.|++++++|+++|+.|++|+.        |+.+.+++|
T Consensus         2 ~~~f~l~~~~G~~~~l~~~~Gk~vvv~~~-as~C~~c~~~~~~l~~l~~~~~~~~~~v~~i~~~~~~~~~~d~~~~~~~f   80 (153)
T TIGR02540         2 FYSFEVKDARGRTVSLEKYRGKVSLVVNV-ASECGFTDQNYRALQELHRELGPSHFNVLAFPCNQFGESEPDSSKEIESF   80 (153)
T ss_pred             cccceeECCCCCEecHHHhCCCEEEEEEe-CCCCCchhhhHHHHHHHHHHHhhCCeEEEEEeccccccCCCCCHHHHHHH
Confidence            46899999999999999999999999999 999999999999999999999999999999984        667899999


Q ss_pred             HHH-cCCCeEEEEc---CChhHH--HHhCCCccCCCCCC--ccEEEEEcCCCcEEEEEeCCCCCCc
Q 028030          146 AKK-YRLPYTLLSD---EGNKVR--KEWGVPADFFGSLP--GRQTYILDKNGVVQLIYNNQFQPEK  203 (215)
Q Consensus       146 ~~~-~~~~~~~~~d---~~~~~~--~~~g~~~~~~g~~p--~~~~~lid~~G~v~~~~~g~~~~~~  203 (215)
                      +++ ++++||++.|   .+....  ..|.+..  .+.+|  ++++||||++|+|+..+.|..+.+.
T Consensus        81 ~~~~~~~~fp~~~d~~~~~~~~~~~~~~~~~~--~~~~p~~~~~tflID~~G~v~~~~~g~~~~~~  144 (153)
T TIGR02540        81 ARRNYGVTFPMFSKIKILGSEAEPAFRFLVDS--SKKEPRWNFWKYLVNPEGQVVKFWRPEEPVEE  144 (153)
T ss_pred             HHHhcCCCCCccceEecCCCCCCcHHHHHHhc--CCCCCCCccEEEEEcCCCcEEEEECCCCCHHH
Confidence            986 8999999876   222222  2333221  12255  3349999999999999999765443

This model represents one of several families of known and probable glutathione peroxidases. This family is restricted to animals and designated GPX7.

>PLN02412 probable glutathione peroxidase

Probab=99.94  E-value=4.4e-26  Score=174.79  Aligned_cols=141  Identities=19%  Similarity=0.314  Sum_probs=110.8

Q ss_pred             CCCCCeEEeCCCCCeeecCCcCCCcEEEEEEcCCCChhhHHHHHHHHHHHHHHHHcCcEEEEEeCC--------CHHHHH
Q 028030           72 QAPPSFTLKDQEGRNVSLSKFKGKPVVVYFYPADETPGCTKQACAFRDSYEKFKKAGAEVIGISGD--------DSSSHK  143 (215)
Q Consensus        72 ~~~P~f~l~~~~g~~~~l~~~~gk~~ll~f~~a~~C~~C~~~~~~l~~l~~~~~~~~v~vv~vs~d--------~~~~~~  143 (215)
                      ..+|+|+++|.+|+.+++++++||++||+|| ++||++|+.+++.|++++++|+++|++||+|+.|        +.+++.
T Consensus         7 ~~~pdf~l~d~~G~~v~l~~~~gk~vlv~f~-a~~C~~c~~e~~~l~~l~~~~~~~g~~vvgv~~~~~~~~~~~~~~~~~   85 (167)
T PLN02412          7 KSIYDFTVKDIGGNDVSLNQYKGKVLLIVNV-ASKCGLTDSNYKELNVLYEKYKEQGFEILAFPCNQFLGQEPGSNEEIQ   85 (167)
T ss_pred             CCCCceEEECCCCCEEeHHHhCCCEEEEEEe-CCCCCChHHHHHHHHHHHHHHhhCCcEEEEecccccccCCCCCHHHHH
Confidence            7899999999999999999999999999999 9999999999999999999999999999999863        455655


Q ss_pred             HH-HHHcCCCeEEEEc--CC-hhHHHHhCCCcc----CCC--CCCccEEEEEcCCCcEEEEEeCCCCCCccHHHHHHHHh
Q 028030          144 AF-AKKYRLPYTLLSD--EG-NKVRKEWGVPAD----FFG--SLPGRQTYILDKNGVVQLIYNNQFQPEKHIDETLKFLQ  213 (215)
Q Consensus       144 ~~-~~~~~~~~~~~~d--~~-~~~~~~~g~~~~----~~g--~~p~~~~~lid~~G~v~~~~~g~~~~~~~~~~il~~l~  213 (215)
                      ++ +++++++||++.|  .+ ......|++...    ..+  ....|++||||++|+|+..+.|..+.+.....+.++|+
T Consensus        86 ~~~~~~~~~~fpvl~~~d~~g~~~~~~~~~~~~~~~~~~~~~v~~~p~tflId~~G~vv~~~~g~~~~~~l~~~i~~~l~  165 (167)
T PLN02412         86 QTVCTRFKAEFPIFDKVDVNGKNTAPLYKYLKAEKGGLFGDAIKWNFTKFLVSKEGKVVQRYAPTTSPLKIEKDIQNLLG  165 (167)
T ss_pred             HHHHHccCCCCceEeEEeeCCCCCCHHHHHHHhhCCCCCCCCcCCCCeeEEECCCCcEEEEECCCCCHHHHHHHHHHHHh
Confidence            54 6899999999863  44 355555542210    111  11134999999999999999998765544444545444

>cd00340 GSH_Peroxidase Glutathione (GSH) peroxidase family; tetrameric selenoenzymes that catalyze the reduction of a variety of hydroperoxides including lipid peroxidases, using GSH as a specific electron donor substrate

Probab=99.94  E-value=1.8e-26  Score=174.38  Aligned_cols=122  Identities=24%  Similarity=0.418  Sum_probs=102.6

Q ss_pred             CCCeEEeCCCCCeeecCCcCCCcEEEEEEcCCCChhhHHHHHHHHHHHHHHHHcCcEEEEEeCC--------CHHHHHHH
Q 028030           74 PPSFTLKDQEGRNVSLSKFKGKPVVVYFYPADETPGCTKQACAFRDSYEKFKKAGAEVIGISGD--------DSSSHKAF  145 (215)
Q Consensus        74 ~P~f~l~~~~g~~~~l~~~~gk~~ll~f~~a~~C~~C~~~~~~l~~l~~~~~~~~v~vv~vs~d--------~~~~~~~~  145 (215)
                      +|+|++.|.+|+.+++++++||++||+|| ++||+ |..++|.|++++++|+++|++||+|+.|        +.+.+++|
T Consensus         2 ~~~f~l~d~~G~~v~l~~~~Gk~vvl~fw-atwC~-C~~e~p~l~~l~~~~~~~~~~vv~v~~~~~~~~~~~~~~~~~~f   79 (152)
T cd00340           2 IYDFSVKDIDGEPVSLSKYKGKVLLIVNV-ASKCG-FTPQYEGLEALYEKYKDRGLVVLGFPCNQFGGQEPGSNEEIKEF   79 (152)
T ss_pred             cceeEEECCCCCEEeHHHhCCCEEEEEEE-cCCCC-chHHHHHHHHHHHHhcCCCEEEEEeccCccccCCCCCHHHHHHH
Confidence            79999999999999999999999999999 99999 9999999999999999889999999863        46889999


Q ss_pred             HHH-cCCCeEEEEcC--Chh-HHHHhCCCccCCCCCC---------ccEEEEEcCCCcEEEEEeCCCC
Q 028030          146 AKK-YRLPYTLLSDE--GNK-VRKEWGVPADFFGSLP---------GRQTYILDKNGVVQLIYNNQFQ  200 (215)
Q Consensus       146 ~~~-~~~~~~~~~d~--~~~-~~~~~g~~~~~~g~~p---------~~~~~lid~~G~v~~~~~g~~~  200 (215)
                      +++ ++++||++.|.  ++. ....|++...   .+|         .+++||||++|+|++++.|..+
T Consensus        80 ~~~~~~~~fp~~~d~d~~~~~~~~~~~~~~~---~~p~~~~~~~~~~~ttflId~~G~i~~~~~G~~~  144 (152)
T cd00340          80 CETNYGVTFPMFAKIDVNGENAHPLYKYLKE---EAPGLLGKDIKWNFTKFLVDRDGEVVKRFAPTTD  144 (152)
T ss_pred             HHHhcCCCceeeeeEeccCCCCChHHHHHHh---cCCCCCCCccccccEEEEECCCCcEEEEECCCCC
Confidence            987 89999999763  333 4555553110   022         3489999999999999999753

GSH peroxidase contains one selenocysteine residue per subunit, which is involved in catalysis. Different isoenzymes are known in mammals,which are involved in protection against reactive oxygen species, redox regulation of many metabolic processes, peroxinitrite scavenging, and modulation of inflammatory processes.

>PTZ00256 glutathione peroxidase; Provisional

Probab=99.94  E-value=7.2e-26  Score=176.09  Aligned_cols=143  Identities=20%  Similarity=0.363  Sum_probs=109.9

Q ss_pred             CCCCCCCeEEeCCCCCeeecCCcCCCcE-EEEEEcCCCChhhHHHHHHHHHHHHHHHHcCcEEEEEeCC--------CHH
Q 028030           70 KGQAPPSFTLKDQEGRNVSLSKFKGKPV-VVYFYPADETPGCTKQACAFRDSYEKFKKAGAEVIGISGD--------DSS  140 (215)
Q Consensus        70 ~g~~~P~f~l~~~~g~~~~l~~~~gk~~-ll~f~~a~~C~~C~~~~~~l~~l~~~~~~~~v~vv~vs~d--------~~~  140 (215)
                      .++.+|+|+++|.+|+.+++++++||++ |++|| ++||++|+.++|.|++++++|+++|+.||+|+.|        +.+
T Consensus        16 ~~~~~p~f~l~d~~G~~vsLs~~~Gk~vvlv~n~-atwCp~C~~e~p~l~~l~~~~~~~gv~vv~vs~~~~~~~~~~~~~   94 (183)
T PTZ00256         16 PTKSFFEFEAIDIDGQLVQLSKFKGKKAIIVVNV-ACKCGLTSDHYTQLVELYKQYKSQGLEILAFPCNQFMEQEPWDEP   94 (183)
T ss_pred             CCCcccceEeEcCCCCEEeHHHhCCCcEEEEEEE-CCCCCchHHHHHHHHHHHHHHhhCCcEEEEEecccccccCCCCHH
Confidence            3578999999999999999999999965 45678 9999999999999999999999999999999864        357


Q ss_pred             HHHHHHH-HcCCCeEEEEc--CChhH-HHHhC----------CCccCCCCCC-ccEEEEEcCCCcEEEEEeCCCCCCccH
Q 028030          141 SHKAFAK-KYRLPYTLLSD--EGNKV-RKEWG----------VPADFFGSLP-GRQTYILDKNGVVQLIYNNQFQPEKHI  205 (215)
Q Consensus       141 ~~~~~~~-~~~~~~~~~~d--~~~~~-~~~~g----------~~~~~~g~~p-~~~~~lid~~G~v~~~~~g~~~~~~~~  205 (215)
                      ++++|++ +++++||++.|  .++.. ...|+          ........+| ++++||||++|+|+..+.|..+.+...
T Consensus        95 ~~~~f~~~~~~~~fpv~~d~d~~g~~~~~~~~~l~~~~~~~~~~~~~~~~iP~~~~tflID~~G~Iv~~~~g~~~~~~l~  174 (183)
T PTZ00256         95 EIKEYVQKKFNVDFPLFQKIEVNGENTHEIYKYLRRNSELFQNNTNEARQIPWNFAKFLIDGQGKVVKYFSPKVNPNEMI  174 (183)
T ss_pred             HHHHHHHHhcCCCCCCceEEecCCCCCCHHHHHHHhhCCCCcCccccCcccCcceEEEEECCCCCEEEEECCCCCHHHHH
Confidence            8888875 78999999854  33332 22221          1000011267 446899999999999999977665555


Q ss_pred             HHHHHHHh
Q 028030          206 DETLKFLQ  213 (215)
Q Consensus       206 ~~il~~l~  213 (215)
                      +.|.++|+
T Consensus       175 ~~I~~ll~  182 (183)
T PTZ00256        175 QDIEKLLN  182 (183)
T ss_pred             HHHHHHhc
Confidence            66666554

>PRK03147 thiol-disulfide oxidoreductase; Provisional

Probab=99.93  E-value=6.2e-25  Score=168.97  Aligned_cols=139  Identities=31%  Similarity=0.619  Sum_probs=125.7

Q ss_pred             ccCCCCCCCCCeEEeCCCCCeeecCCcCCCcEEEEEEcCCCChhhHHHHHHHHHHHHHHHHcCcEEEEEeCCC-HHHHHH
Q 028030           66 AKVSKGQAPPSFTLKDQEGRNVSLSKFKGKPVVVYFYPADETPGCTKQACAFRDSYEKFKKAGAEVIGISGDD-SSSHKA  144 (215)
Q Consensus        66 ~~~~~g~~~P~f~l~~~~g~~~~l~~~~gk~~ll~f~~a~~C~~C~~~~~~l~~l~~~~~~~~v~vv~vs~d~-~~~~~~  144 (215)
                      ..+++|..+|+|++.+.+|+.+++++++||+++|+|| ++||+.|+.+++.|++++++++++++++++|+.|+ .+++++
T Consensus        33 ~~~~~g~~~p~~~~~~~~g~~~~l~~~~~k~~~l~f~-a~~C~~C~~~~~~l~~~~~~~~~~~~~vi~i~~d~~~~~~~~  111 (173)
T PRK03147         33 EKVQVGKEAPNFVLTDLEGKKIELKDLKGKGVFLNFW-GTWCKPCEKEMPYMNELYPKYKEKGVEIIAVNVDETELAVKN  111 (173)
T ss_pred             cccCCCCCCCCcEeecCCCCEEeHHHcCCCEEEEEEE-CCcCHHHHHHHHHHHHHHHHhhcCCeEEEEEEcCCCHHHHHH
Confidence            5678999999999999999999999999999999999 99999999999999999999998889999999875 578999


Q ss_pred             HHHHcCCCeEEEEcCChhHHHHhCCCccCCCCCCccEEEEEcCCCcEEEEEeCCCCCCccHHHHHHHHh
Q 028030          145 FAKKYRLPYTLLSDEGNKVRKEWGVPADFFGSLPGRQTYILDKNGVVQLIYNNQFQPEKHIDETLKFLQ  213 (215)
Q Consensus       145 ~~~~~~~~~~~~~d~~~~~~~~~g~~~~~~g~~p~~~~~lid~~G~v~~~~~g~~~~~~~~~~il~~l~  213 (215)
                      |+++++++|+++.|+++.+.+.||+..     +|  ++|+||++|+|+..+.|... ++.+.+.++.++
T Consensus       112 ~~~~~~~~~~~~~d~~~~~~~~~~v~~-----~P--~~~lid~~g~i~~~~~g~~~-~~~l~~~l~~~~  172 (173)
T PRK03147        112 FVNRYGLTFPVAIDKGRQVIDAYGVGP-----LP--TTFLIDKDGKVVKVITGEMT-EEQLEEYLEKIK  172 (173)
T ss_pred             HHHHhCCCceEEECCcchHHHHcCCCC-----cC--eEEEECCCCcEEEEEeCCCC-HHHHHHHHHHhc
Confidence            999999999999999999999999986     88  99999999999999888653 344666666654

>PRK15412 thiol:disulfide interchange protein DsbE; Provisional

Probab=99.93  E-value=2.5e-25  Score=173.36  Aligned_cols=130  Identities=24%  Similarity=0.454  Sum_probs=110.9

Q ss_pred             cCCCCCCCCCeEEeCCC--CCeeecCCc-CCCcEEEEEEcCCCChhhHHHHHHHHHHHHHHHHcCcEEEEEeCC-CHHHH
Q 028030           67 KVSKGQAPPSFTLKDQE--GRNVSLSKF-KGKPVVVYFYPADETPGCTKQACAFRDSYEKFKKAGAEVIGISGD-DSSSH  142 (215)
Q Consensus        67 ~~~~g~~~P~f~l~~~~--g~~~~l~~~-~gk~~ll~f~~a~~C~~C~~~~~~l~~l~~~~~~~~v~vv~vs~d-~~~~~  142 (215)
                      ...+|+++|+|++.|.+  |+.++++++ +||++||+|| ++||++|+.++|.|.++++    +|++|++|+.| +.+++
T Consensus        38 ~~~~g~~~p~f~l~~~~g~g~~~~~~~~~~gk~vvv~Fw-atwC~~C~~e~p~l~~l~~----~~~~vi~v~~~~~~~~~  112 (185)
T PRK15412         38 SALIGKPVPKFRLESLENPGQFYQADVLTQGKPVLLNVW-ATWCPTCRAEHQYLNQLSA----QGIRVVGMNYKDDRQKA  112 (185)
T ss_pred             hhhcCCCCCCcCCccCCCCCccccHHHhcCCCEEEEEEE-CCCCHHHHHHHHHHHHHHH----cCCEEEEEECCCCHHHH
Confidence            45689999999999988  477777766 7999999999 9999999999999988753    48999999974 56889


Q ss_pred             HHHHHHcCCCeEE-EEcCChhHHHHhCCCccCCCCCCccEEEEEcCCCcEEEEEeCCCCCCccHHHHH
Q 028030          143 KAFAKKYRLPYTL-LSDEGNKVRKEWGVPADFFGSLPGRQTYILDKNGVVQLIYNNQFQPEKHIDETL  209 (215)
Q Consensus       143 ~~~~~~~~~~~~~-~~d~~~~~~~~~g~~~~~~g~~p~~~~~lid~~G~v~~~~~g~~~~~~~~~~il  209 (215)
                      ++|+++++++|++ +.|+++.+...||+..     +|  ++|+||++|+|++.+.|..+.+ .+++.+
T Consensus       113 ~~~~~~~~~~~~~~~~D~~~~~~~~~gv~~-----~P--~t~vid~~G~i~~~~~G~~~~~-~l~~~i  172 (185)
T PRK15412        113 ISWLKELGNPYALSLFDGDGMLGLDLGVYG-----AP--ETFLIDGNGIIRYRHAGDLNPR-VWESEI  172 (185)
T ss_pred             HHHHHHcCCCCceEEEcCCccHHHhcCCCc-----CC--eEEEECCCceEEEEEecCCCHH-HHHHHH
Confidence            9999999999985 7799999999999987     88  9999999999999999976443 344433

>COG0450 AhpC Peroxiredoxin [Posttranslational modification, protein turnover, chaperones]

Probab=99.93  E-value=4.9e-25  Score=167.89  Aligned_cols=146  Identities=35%  Similarity=0.606  Sum_probs=132.2

Q ss_pred             CCCCCCCCCeEEeCC-CCC---eeecCCcCCCcEEEEEEcCCCChhhHHHHHHHHHHHHHHHHcCcEEEEEeCCCHHHHH
Q 028030           68 VSKGQAPPSFTLKDQ-EGR---NVSLSKFKGKPVVVYFYPADETPGCTKQACAFRDSYEKFKKAGAEVIGISGDDSSSHK  143 (215)
Q Consensus        68 ~~~g~~~P~f~l~~~-~g~---~~~l~~~~gk~~ll~f~~a~~C~~C~~~~~~l~~l~~~~~~~~v~vv~vs~d~~~~~~  143 (215)
                      ..+|+++|+|+.+.. .|.   +++++++.|||++|+|||+++.+.|..++..+++++++++++|++||+||+|+.+.+.
T Consensus         3 ~lIg~~aP~F~~~a~~~~~~~~~i~l~d~~gkw~VLff~P~DFTfVCpTEi~af~~~y~eF~~~g~eVigvS~Ds~fsH~   82 (194)
T COG0450           3 SLIGKKAPDFTANAVLGGEIFEEITLSDYYGKWVVLFFYPADFTFVCPTEIIAFAKRYEEFQKRGVEVIGVSTDSVFSHK   82 (194)
T ss_pred             cccCCcCCCcEEEEEecCceeeEEechhhcCcEEEEEeccCCCCccCcchHHHHHhhhHHHHHcCCEEEEEecCcHHHHH
Confidence            458999999999987 774   8999999889999999999999999999999999999999999999999999999999


Q ss_pred             HHHHH----cC---CCeEEEEcCChhHHHHhCCCccCCCCCCccEEEEEcCCCcEEEEEeCCCCCCccHHHHHHHHhc
Q 028030          144 AFAKK----YR---LPYTLLSDEGNKVRKEWGVPADFFGSLPGRQTYILDKNGVVQLIYNNQFQPEKHIDETLKFLQS  214 (215)
Q Consensus       144 ~~~~~----~~---~~~~~~~d~~~~~~~~~g~~~~~~g~~p~~~~~lid~~G~v~~~~~g~~~~~~~~~~il~~l~~  214 (215)
                      +|.+.    .+   ++||++.|.++++++.||+.....| ..-|.+||||++|+|+...........+++++|+.|+.
T Consensus        83 aW~~~~~~~~gi~~i~~PmiaD~~~~vs~~ygvl~~~~g-~a~R~~FIIDp~g~ir~~~v~~~~iGRn~dEilR~idA  159 (194)
T COG0450          83 AWKATIREAGGIGKIKFPMIADPKGEIARAYGVLHPEEG-LALRGTFIIDPDGVIRHILVNPLTIGRNVDEILRVIDA  159 (194)
T ss_pred             HHHhcHHhcCCccceecceEEcCchhHHHHcCCcccCCC-cceeEEEEECCCCeEEEEEEecCCCCcCHHHHHHHHHH
Confidence            99975    45   6799999999999999999975555 24459999999999999988887888999999998874

>cd02970 PRX_like2 Peroxiredoxin (PRX)-like 2 family; hypothetical proteins that show sequence similarity to PRXs

Probab=99.93  E-value=5.2e-25  Score=165.08  Aligned_cols=125  Identities=23%  Similarity=0.420  Sum_probs=110.1

Q ss_pred             CCCCeEEeCCCCCeeecCCcC-CCcEEEEEEcCCCChhhHHHHHHHHHHHHHHHHcCcEEEEEeCCCHHHHHHHHHHcCC
Q 028030           73 APPSFTLKDQEGRNVSLSKFK-GKPVVVYFYPADETPGCTKQACAFRDSYEKFKKAGAEVIGISGDDSSSHKAFAKKYRL  151 (215)
Q Consensus        73 ~~P~f~l~~~~g~~~~l~~~~-gk~~ll~f~~a~~C~~C~~~~~~l~~l~~~~~~~~v~vv~vs~d~~~~~~~~~~~~~~  151 (215)
                      .+|+|+++|.+|+.++++++. +|++||+||+++||++|+.+++.|++++++++++|+++|+|+.|+.+...+|.+++++
T Consensus         1 ~~p~f~l~~~~g~~~~l~~~~~~~~~vl~f~~~~~Cp~C~~~~~~l~~~~~~~~~~~v~vv~V~~~~~~~~~~~~~~~~~   80 (149)
T cd02970           1 TAPDFELPDAGGETVTLSALLGEGPVVVVFYRGFGCPFCREYLRALSKLLPELDALGVELVAVGPESPEKLEAFDKGKFL   80 (149)
T ss_pred             CCCCccccCCCCCEEchHHHhcCCCEEEEEECCCCChhHHHHHHHHHHHHHHHHhcCeEEEEEeCCCHHHHHHHHHhcCC
Confidence            479999999999999999874 5888888877999999999999999999999988999999999999888899999999


Q ss_pred             CeEEEEcCChhHHHHhCCCccCC----------------------CCCCccEEEEEcCCCcEEEEEeC
Q 028030          152 PYTLLSDEGNKVRKEWGVPADFF----------------------GSLPGRQTYILDKNGVVQLIYNN  197 (215)
Q Consensus       152 ~~~~~~d~~~~~~~~~g~~~~~~----------------------g~~p~~~~~lid~~G~v~~~~~g  197 (215)
                      +|+++.|+++.+++.||+.....                      ...+.|.+||||++|+|++.+.+
T Consensus        81 ~~p~~~D~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~fvid~~g~i~~~~~~  148 (149)
T cd02970          81 PFPVYADPDRKLYRALGLVRSLPWSNTPRALWKNAAIGFRGNDEGDGLQLPGVFVIGPDGTILFAHVD  148 (149)
T ss_pred             CCeEEECCchhHHHHcCceecCcHHHHHHHHhhCcccccccCCCCcccccceEEEECCCCeEEEEecC
Confidence            99999999999999999963221                      11233499999999999998876

Members of this group contain a CXXC motif, similar to TRX. The second cysteine in the motif corresponds to the peroxidatic cysteine of PRX, however, these proteins do not contain the other two residues of the catalytic triad of PRX. PRXs confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. TRXs alter the redox state of target proteins by catalyzing the reduction of their disulfide bonds via the CXXC motif using reducing equivalents derived from either NADPH or ferredoxins.

>cd03013 PRX5_like Peroxiredoxin (PRX) family, PRX5-like subfamily; members are similar to the human protein, PRX5, a homodimeric TRX peroxidase, widely expressed in tissues and found cellularly in mitochondria, peroxisomes and the cytosol

Probab=99.93  E-value=7.7e-25  Score=165.84  Aligned_cols=130  Identities=30%  Similarity=0.451  Sum_probs=116.8

Q ss_pred             CCCCCCCeEEeCCC---CCeeecCC-cCCCcEEEEEEcCCCChhhHHH-HHHHHHHHHHHHHcCc-EEEEEeCCCHHHHH
Q 028030           70 KGQAPPSFTLKDQE---GRNVSLSK-FKGKPVVVYFYPADETPGCTKQ-ACAFRDSYEKFKKAGA-EVIGISGDDSSSHK  143 (215)
Q Consensus        70 ~g~~~P~f~l~~~~---g~~~~l~~-~~gk~~ll~f~~a~~C~~C~~~-~~~l~~l~~~~~~~~v-~vv~vs~d~~~~~~  143 (215)
                      +|+++|+|++.+.+   |+.++|++ ++||++||+|||+.||+.|..+ ++.|++.++++++.|+ +|++||.|+++.++
T Consensus         1 vG~~aPdF~l~~~~~~~g~~v~L~~~~~gk~vvl~fyP~~~tp~Ct~e~~~~~~~~~~~f~~~g~~~V~~iS~D~~~~~~   80 (155)
T cd03013           1 VGDKLPNVTLFEYVPGPPNPVNLSELFKGKKVVIFGVPGAFTPTCSAQHLPGYVENADELKAKGVDEVICVSVNDPFVMK   80 (155)
T ss_pred             CCCcCCCeEeeeeccCCCceeeHHHHhCCCcEEEEEeCCCCCCCCchhHHHHHHHhHHHHHHCCCCEEEEEECCCHHHHH
Confidence            58999999999985   99999999 5999999999999999999999 9999999999999999 69999999999999


Q ss_pred             HHHHHcCC--CeEEEEcCChhHHHHhCCCccCC--C--CCCccEEEEEcCCCcEEEEEeCCCC
Q 028030          144 AFAKKYRL--PYTLLSDEGNKVRKEWGVPADFF--G--SLPGRQTYILDKNGVVQLIYNNQFQ  200 (215)
Q Consensus       144 ~~~~~~~~--~~~~~~d~~~~~~~~~g~~~~~~--g--~~p~~~~~lid~~G~v~~~~~g~~~  200 (215)
                      +|++++++  +|++++|.++++.+.||+.....  |  ..+.|.+|||| +|+|++.+.....
T Consensus        81 ~~~~~~~~~~~f~lLsD~~~~~~~~ygv~~~~~~~~~~~~~~R~~fiId-~g~I~~~~~~~~~  142 (155)
T cd03013          81 AWGKALGAKDKIRFLADGNGEFTKALGLTLDLSAAGGGIRSKRYALIVD-DGKVKYLFVEEDP  142 (155)
T ss_pred             HHHHhhCCCCcEEEEECCCHHHHHHcCCCccccccCCcceeeeEEEEEC-CCEEEEEEEecCC
Confidence            99999998  89999999999999999975432  2  23567999999 7999999876543

The cellular location of PRX5 suggests that it may have an important antioxidant role in organelles that are major sources of reactive oxygen species (ROS), as well as a role in the control of signal transduction. PRX5 has been shown to reduce hydrogen peroxide, alkyl hydroperoxides and peroxynitrite. As with all other PRXs, the N-terminal peroxidatic cysteine of PRX5 is oxidized into a sulfenic acid intermediate upon reaction with peroxides. Human PRX5 is able to resolve this intermediate by forming an intramolecular disulfide bond with its C-terminal cysteine (the resolving cysteine), which can then be reduced by TRX, just like an atypical 2-cys PRX. This resolving cysteine, however, is not conserved in other members of the subfamily. In such cases

>TIGR02661 MauD methylamine dehydrogenase accessory protein MauD

Probab=99.93  E-value=1.2e-24  Score=170.09  Aligned_cols=134  Identities=22%  Similarity=0.349  Sum_probs=115.4

Q ss_pred             cCCCCCCCCCeEEeCCCCCeeecC--CcCCCcEEEEEEcCCCChhhHHHHHHHHHHHHHHHHcCcEEEEEeCCCHHHHHH
Q 028030           67 KVSKGQAPPSFTLKDQEGRNVSLS--KFKGKPVVVYFYPADETPGCTKQACAFRDSYEKFKKAGAEVIGISGDDSSSHKA  144 (215)
Q Consensus        67 ~~~~g~~~P~f~l~~~~g~~~~l~--~~~gk~~ll~f~~a~~C~~C~~~~~~l~~l~~~~~~~~v~vv~vs~d~~~~~~~  144 (215)
                      .+.+|+.+|+|+++|.+|+.++++  +++||+++|+|| ++||++|+.++|.+.+++++   .++++++|+.|+++++++
T Consensus        45 ~~~vG~~aP~f~l~d~~G~~v~l~~~~~~gk~vvl~F~-atwCp~C~~~lp~l~~~~~~---~~~~vv~Is~~~~~~~~~  120 (189)
T TIGR02661        45 GPDVGDAAPIFNLPDFDGEPVRIGGSIAPGRPTLLMFT-APSCPVCDKLFPIIKSIARA---EETDVVMISDGTPAEHRR  120 (189)
T ss_pred             CCCCCCcCCCcEecCCCCCEEeccchhcCCCEEEEEEE-CCCChhHHHHHHHHHHHHHh---cCCcEEEEeCCCHHHHHH
Confidence            468999999999999999999995  469999999999 99999999999999998754   368899999889999999


Q ss_pred             HHHHcCCCeEEEEcCChhHHHHhCCCccCCCCCCccEEEEEcCCCcEEEEEeCCCCCCccHHHHHHHHhc
Q 028030          145 FAKKYRLPYTLLSDEGNKVRKEWGVPADFFGSLPGRQTYILDKNGVVQLIYNNQFQPEKHIDETLKFLQS  214 (215)
Q Consensus       145 ~~~~~~~~~~~~~d~~~~~~~~~g~~~~~~g~~p~~~~~lid~~G~v~~~~~g~~~~~~~~~~il~~l~~  214 (215)
                      |+++++++++.+. ..+++.+.|++..     +|  ++|+||++|+|++.  +.....+.++++++.+++
T Consensus       121 ~~~~~~~~~~~~~-~~~~i~~~y~v~~-----~P--~~~lID~~G~I~~~--g~~~~~~~le~ll~~l~~  180 (189)
T TIGR02661       121 FLKDHELGGERYV-VSAEIGMAFQVGK-----IP--YGVLLDQDGKIRAK--GLTNTREHLESLLEADRE  180 (189)
T ss_pred             HHHhcCCCcceee-chhHHHHhccCCc-----cc--eEEEECCCCeEEEc--cCCCCHHHHHHHHHHHHc
Confidence            9999999876544 4678999999986     88  99999999999976  434455678888887764

This protein, MauD, appears critical to proper formation of the small subunit of methylamine dehydrogenase, which has both an unusual tryptophan tryptophylquinone cofactor and multiple disulfide bonds. MauD shares sequence similarity, including a CPxC motif, with a number of thiol:disulfide interchange proteins. In MauD mutants, the small subunit apparently does not form properly and is rapidly degraded.

>cd02969 PRX_like1 Peroxiredoxin (PRX)-like 1 family; hypothetical proteins that show sequence similarity to PRXs

Probab=99.93  E-value=1.7e-24  Score=166.53  Aligned_cols=117  Identities=27%  Similarity=0.503  Sum_probs=110.4

Q ss_pred             CCCCCCeEEeCCCCCeeecCCc-CCCcEEEEEEcCCCChhhHHHHHHHHHHHHHHHHcCcEEEEEeCC--------CHHH
Q 028030           71 GQAPPSFTLKDQEGRNVSLSKF-KGKPVVVYFYPADETPGCTKQACAFRDSYEKFKKAGAEVIGISGD--------DSSS  141 (215)
Q Consensus        71 g~~~P~f~l~~~~g~~~~l~~~-~gk~~ll~f~~a~~C~~C~~~~~~l~~l~~~~~~~~v~vv~vs~d--------~~~~  141 (215)
                      |+++|+|++.+.+|+.++++++ +||++||+|| ++||+.|..+++.|++++++++++++++|+|+.|        +.+.
T Consensus         1 g~~~p~f~l~~~~g~~v~l~~~~~~k~~ll~f~-~t~Cp~c~~~~~~l~~l~~~~~~~~v~~v~is~d~~~~~~~d~~~~   79 (171)
T cd02969           1 GSPAPDFSLPDTDGKTYSLADFADGKALVVMFI-CNHCPYVKAIEDRLNRLAKEYGAKGVAVVAINSNDIEAYPEDSPEN   79 (171)
T ss_pred             CCcCCCccccCCCCCEEeHHHHhCCCEEEEEEE-CCCCccHHHHHHHHHHHHHHHhhCCeEEEEEecCccccccccCHHH
Confidence            6789999999999999999998 8999999999 9999999999999999999999889999999985        4689


Q ss_pred             HHHHHHHcCCCeEEEEcCChhHHHHhCCCccCCCCCCccEEEEEcCCCcEEEEE
Q 028030          142 HKAFAKKYRLPYTLLSDEGNKVRKEWGVPADFFGSLPGRQTYILDKNGVVQLIY  195 (215)
Q Consensus       142 ~~~~~~~~~~~~~~~~d~~~~~~~~~g~~~~~~g~~p~~~~~lid~~G~v~~~~  195 (215)
                      +++|+++++++|+++.|.++.+.+.||+..     .|  .+||||++|+|++..
T Consensus        80 ~~~~~~~~~~~~~~l~D~~~~~~~~~~v~~-----~P--~~~lid~~G~v~~~~  126 (171)
T cd02969          80 MKAKAKEHGYPFPYLLDETQEVAKAYGAAC-----TP--DFFLFDPDGKLVYRG  126 (171)
T ss_pred             HHHHHHHCCCCceEEECCchHHHHHcCCCc-----CC--cEEEECCCCeEEEee
Confidence            999999999999999999999999999986     78  999999999999875

Members of this group contain a conserved cysteine that aligns to the first cysteine in the CXXC motif of TRX. This does not correspond to the peroxidatic cysteine found in PRXs, which aligns to the second cysteine in the CXXC motif of TRX. In addition, these proteins do not contain the other two conserved residues of the catalytic triad of PRX. PRXs confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF.

>cd03012 TlpA_like_DipZ_like TlpA-like family, DipZ-like subfamily; composed uncharacterized proteins containing a TlpA-like TRX domain

Probab=99.92  E-value=7.5e-25  Score=160.41  Aligned_cols=107  Identities=23%  Similarity=0.433  Sum_probs=100.3

Q ss_pred             CCeeecCCcCCCcEEEEEEcCCCChhhHHHHHHHHHHHHHHHHcCcEEEEEeC------CCHHHHHHHHHHcCCCeEEEE
Q 028030           84 GRNVSLSKFKGKPVVVYFYPADETPGCTKQACAFRDSYEKFKKAGAEVIGISG------DDSSSHKAFAKKYRLPYTLLS  157 (215)
Q Consensus        84 g~~~~l~~~~gk~~ll~f~~a~~C~~C~~~~~~l~~l~~~~~~~~v~vv~vs~------d~~~~~~~~~~~~~~~~~~~~  157 (215)
                      |+++++++++||++||+|| ++||++|..++|.|++++++++++++++|+|+.      ++.+.+++|+++++++|+++.
T Consensus        13 ~~~v~l~~~~gk~vvl~F~-a~~C~~C~~~~p~l~~l~~~~~~~~~~vi~i~~~~~~~~~~~~~~~~~~~~~~~~~p~~~   91 (126)
T cd03012          13 DKPLSLAQLRGKVVLLDFW-TYCCINCLHTLPYLTDLEQKYKDDGLVVIGVHSPEFAFERDLANVKSAVLRYGITYPVAN   91 (126)
T ss_pred             CCccCHHHhCCCEEEEEEE-CCCCccHHHHHHHHHHHHHHcCcCCeEEEEeccCccccccCHHHHHHHHHHcCCCCCEEE
Confidence            5789999999999999999 999999999999999999999988999999976      457899999999999999999


Q ss_pred             cCChhHHHHhCCCccCCCCCCccEEEEEcCCCcEEEEEeCC
Q 028030          158 DEGNKVRKEWGVPADFFGSLPGRQTYILDKNGVVQLIYNNQ  198 (215)
Q Consensus       158 d~~~~~~~~~g~~~~~~g~~p~~~~~lid~~G~v~~~~~g~  198 (215)
                      |+++.+.+.|++..     +|  ++||||++|+|++.+.|.
T Consensus        92 D~~~~~~~~~~v~~-----~P--~~~vid~~G~v~~~~~G~  125 (126)
T cd03012          92 DNDYATWRAYGNQY-----WP--ALYLIDPTGNVRHVHFGE  125 (126)
T ss_pred             CCchHHHHHhCCCc-----CC--eEEEECCCCcEEEEEecC
Confidence            99999999999986     88  999999999999999884

Some members show domain architectures similar to that of E. coli DipZ protein (also known as DsbD). The only eukaryotic members of the TlpA family belong to this subfamily. TlpA is a disulfide reductase known to have a crucial role in the biogenesis of cytochrome aa3.

>TIGR00385 dsbE periplasmic protein thiol:disulfide oxidoreductases, DsbE subfamily

Probab=99.92  E-value=1.9e-24  Score=166.67  Aligned_cols=125  Identities=25%  Similarity=0.439  Sum_probs=107.3

Q ss_pred             cCCCCCCCCCeEEeCCCCC--eeecCCc-CCCcEEEEEEcCCCChhhHHHHHHHHHHHHHHHHcCcEEEEEeCC-CHHHH
Q 028030           67 KVSKGQAPPSFTLKDQEGR--NVSLSKF-KGKPVVVYFYPADETPGCTKQACAFRDSYEKFKKAGAEVIGISGD-DSSSH  142 (215)
Q Consensus        67 ~~~~g~~~P~f~l~~~~g~--~~~l~~~-~gk~~ll~f~~a~~C~~C~~~~~~l~~l~~~~~~~~v~vv~vs~d-~~~~~  142 (215)
                      ...+|+++|+|++++.+|+  .++++++ +||+++|+|| ++||++|+.++|.++++++    +|+++|+|+.+ +.++.
T Consensus        33 ~~~vG~~ap~f~l~~~~G~~~~~~~~~~~~gk~vll~F~-a~wC~~C~~~~p~l~~l~~----~~~~vi~V~~~~~~~~~  107 (173)
T TIGR00385        33 SALIGKPVPAFPLAALREPLQAYTPEAFIQGKPVLLNVW-ASWCPPCRAEHPYLNELAK----DGLPIVGVDYKDQSQNA  107 (173)
T ss_pred             chhcCCCCCCccccccCCCCcccCHHHhcCCCEEEEEEE-CCcCHHHHHHHHHHHHHHH----cCCEEEEEECCCChHHH
Confidence            4568999999999999987  4555565 7999999999 9999999999999987753    47999999985 45778


Q ss_pred             HHHHHHcCCCeE-EEEcCChhHHHHhCCCccCCCCCCccEEEEEcCCCcEEEEEeCCCCCCc
Q 028030          143 KAFAKKYRLPYT-LLSDEGNKVRKEWGVPADFFGSLPGRQTYILDKNGVVQLIYNNQFQPEK  203 (215)
Q Consensus       143 ~~~~~~~~~~~~-~~~d~~~~~~~~~g~~~~~~g~~p~~~~~lid~~G~v~~~~~g~~~~~~  203 (215)
                      ++|+++++++|+ ++.|+++.+.+.|++..     +|  ++|+||++|+|++.+.|..+.+.
T Consensus       108 ~~~~~~~~~~f~~v~~D~~~~~~~~~~v~~-----~P--~~~~id~~G~i~~~~~G~~~~~~  162 (173)
T TIGR00385       108 LKFLKELGNPYQAILIDPNGKLGLDLGVYG-----AP--ETFLVDGNGVILYRHAGPLNNEV  162 (173)
T ss_pred             HHHHHHcCCCCceEEECCCCchHHhcCCee-----CC--eEEEEcCCceEEEEEeccCCHHH
Confidence            899999999997 56799999999999987     88  99999999999999999654433

Involved in the biogenesis of c-type cytochromes as well as in disulfide bond formation in some periplasmic proteins.

>cd03010 TlpA_like_DsbE TlpA-like family, DsbE (also known as CcmG and CycY) subfamily; DsbE is a membrane-anchored, periplasmic TRX-like reductase containing a CXXC motif that specifically donates reducing equivalents to apocytochrome c via CcmH, another cytochrome c maturation (Ccm) factor with a redox active CXXC motif

Probab=99.92  E-value=4.4e-24  Score=156.36  Aligned_cols=118  Identities=20%  Similarity=0.405  Sum_probs=106.5

Q ss_pred             CCCCCeEEeCCCC--CeeecCCcCCCcEEEEEEcCCCChhhHHHHHHHHHHHHHHHHcCcEEEEEeC-CCHHHHHHHHHH
Q 028030           72 QAPPSFTLKDQEG--RNVSLSKFKGKPVVVYFYPADETPGCTKQACAFRDSYEKFKKAGAEVIGISG-DDSSSHKAFAKK  148 (215)
Q Consensus        72 ~~~P~f~l~~~~g--~~~~l~~~~gk~~ll~f~~a~~C~~C~~~~~~l~~l~~~~~~~~v~vv~vs~-d~~~~~~~~~~~  148 (215)
                      +++|+|++++.+|  +.+++++++||++||+|| ++||++|+.+++.|+++.+++   +++||+|+. ++.+.+++|+++
T Consensus         1 ~~~p~f~~~~~~g~~~~~~~~~~~gk~vvv~F~-a~~C~~C~~~~~~l~~l~~~~---~~~vv~v~~~~~~~~~~~~~~~   76 (127)
T cd03010           1 KPAPAFSLPALPGPDKTLTSADLKGKPYLLNVW-ASWCAPCREEHPVLMALARQG---RVPIYGINYKDNPENALAWLAR   76 (127)
T ss_pred             CCCCCcccccccCCCccccHHHcCCCEEEEEEE-cCcCHHHHHHHHHHHHHHHhc---CcEEEEEECCCCHHHHHHHHHh
Confidence            3689999999998  889999999999999999 999999999999999987664   499999997 567899999999


Q ss_pred             cCCCeE-EEEcCChhHHHHhCCCccCCCCCCccEEEEEcCCCcEEEEEeCCCC
Q 028030          149 YRLPYT-LLSDEGNKVRKEWGVPADFFGSLPGRQTYILDKNGVVQLIYNNQFQ  200 (215)
Q Consensus       149 ~~~~~~-~~~d~~~~~~~~~g~~~~~~g~~p~~~~~lid~~G~v~~~~~g~~~  200 (215)
                      ++++|+ ++.|..+.+...|++..     +|  ++|+||++|+|+..+.|..+
T Consensus        77 ~~~~~~~~~~D~~~~~~~~~~v~~-----~P--~~~~ld~~G~v~~~~~G~~~  122 (127)
T cd03010          77 HGNPYAAVGFDPDGRVGIDLGVYG-----VP--ETFLIDGDGIIRYKHVGPLT  122 (127)
T ss_pred             cCCCCceEEECCcchHHHhcCCCC-----CC--eEEEECCCceEEEEEeccCC
Confidence            999986 56899999999999987     88  99999999999999998653

Assembly of cytochrome c requires the ligation of heme to reduced thiols of the apocytochrome. In bacteria, this assembly occurs in the periplasm. The reductase activity of DsbE in the oxidizing environment of the periplasm is crucial in the maturation of cytochrome c.

>cd02967 mauD Methylamine utilization (mau) D family; mauD protein is the translation product of the mauD gene found in methylotrophic bacteria, which are able to use methylamine as a sole carbon source and a nitrogen source

Probab=99.90  E-value=5.2e-23  Score=147.73  Aligned_cols=110  Identities=24%  Similarity=0.428  Sum_probs=98.8

Q ss_pred             CCeEEeCCCCCeeecCCcC-CCcEEEEEEcCCCChhhHHHHHHHHHHHHHHHHcCcEEEEEeCCCHHHHHHHHHHcCCC-
Q 028030           75 PSFTLKDQEGRNVSLSKFK-GKPVVVYFYPADETPGCTKQACAFRDSYEKFKKAGAEVIGISGDDSSSHKAFAKKYRLP-  152 (215)
Q Consensus        75 P~f~l~~~~g~~~~l~~~~-gk~~ll~f~~a~~C~~C~~~~~~l~~l~~~~~~~~v~vv~vs~d~~~~~~~~~~~~~~~-  152 (215)
                      |+|++.+.+|+.+++++++ ||++||+|| ++||++|+.++|.++++++++++ ++.++.++.++.+++++|++++++. 
T Consensus         1 p~f~l~~~~G~~~~l~~~~~gk~vvl~F~-~~wC~~C~~~~p~l~~~~~~~~~-~~~vi~v~~~~~~~~~~~~~~~~~~~   78 (114)
T cd02967           1 PTFDLTTIDGAPVRIGGISPGRPTLLFFL-SPTCPVCKKLLPVIRSIARAEAD-WLDVVLASDGEKAEHQRFLKKHGLEA   78 (114)
T ss_pred             CCceeecCCCCEEEcccccCCCeEEEEEE-CCCCcchHhHhHHHHHHHHHhcC-CcEEEEEeCCCHHHHHHHHHHhCCCC
Confidence            7899999999999999997 999999999 99999999999999999888764 5999988877889999999999995 


Q ss_pred             eEEEEcCChhHHHHhCCCccCCCCCCccEEEEEcCCCcEEEEE
Q 028030          153 YTLLSDEGNKVRKEWGVPADFFGSLPGRQTYILDKNGVVQLIY  195 (215)
Q Consensus       153 ~~~~~d~~~~~~~~~g~~~~~~g~~p~~~~~lid~~G~v~~~~  195 (215)
                      +|.+.+  .++...|++..     +|  ++|+||++|+|+++.
T Consensus        79 ~p~~~~--~~~~~~~~~~~-----~P--~~~vid~~G~v~~~~  112 (114)
T cd02967          79 FPYVLS--AELGMAYQVSK-----LP--YAVLLDEAGVIAAKG  112 (114)
T ss_pred             CcEEec--HHHHhhcCCCC-----cC--eEEEECCCCeEEecc
Confidence            888764  56889999986     88  999999999998753

mauD is an essential accessory protein for the biosynthesis of methylamine dehydrogenase (MADH), the enzyme that catalyzes the oxidation of methylamine and other primary amines. MADH possesses an alpha2beta2 subunit structure; the alpha subunit is also referred to as the large subunit. Each beta (small) subunit contains a tryptophan tryptophylquinone (TTQ) prosthetic group. Accessory proteins are essential for the proper transport of MADH to the periplasm, TTQ synthesis and the formation of several structural disulfide bonds. Bacterial mutants containing an insertion on the mauD gene were unable to grow on methylamine as a sole carbon source, were found to lack the MADH small subunit and had decreased amounts of the MADH large subunit.

>cd02968 SCO SCO (an acronym for Synthesis of Cytochrome c Oxidase) family; composed of proteins similar to Sco1, a membrane-anchored protein possessing a soluble domain with a TRX fold

Probab=99.90  E-value=3.2e-23  Score=154.40  Aligned_cols=124  Identities=31%  Similarity=0.487  Sum_probs=107.1

Q ss_pred             CCCCeEEeCCCCCeeecCCcCCCcEEEEEEcCCCChh-hHHHHHHHHHHHHHHHHcC---cEEEEEeCC----CHHHHHH
Q 028030           73 APPSFTLKDQEGRNVSLSKFKGKPVVVYFYPADETPG-CTKQACAFRDSYEKFKKAG---AEVIGISGD----DSSSHKA  144 (215)
Q Consensus        73 ~~P~f~l~~~~g~~~~l~~~~gk~~ll~f~~a~~C~~-C~~~~~~l~~l~~~~~~~~---v~vv~vs~d----~~~~~~~  144 (215)
                      .+|+|++.+.+|+.+++.+++||++||+|| ++||++ |..+++.|+++++++++++   +++++|+.|    +++.+++
T Consensus         1 ~~p~f~l~~~~g~~~~l~~~~gk~~vl~f~-~~~C~~~C~~~l~~l~~~~~~~~~~~~~~v~~v~vs~d~~~d~~~~~~~   79 (142)
T cd02968           1 IGPDFTLTDQDGRPVTLSDLKGKPVLVYFG-YTHCPDVCPTTLANLAQALKQLGADGGDDVQVVFISVDPERDTPEVLKA   79 (142)
T ss_pred             CCCceEEEcCCCCEEchHHhCCCEEEEEEE-cCCCcccCHHHHHHHHHHHHHhhHhhcCceEEEEEEECCCCCCHHHHHH
Confidence            479999999999999999999999999999 999997 9999999999999999865   999999975    4688999


Q ss_pred             HHHHcCCCeEEEEcCC---hhHHHHhCCCccCC-------CCCCccEEEEEcCCCcEEEEEeC
Q 028030          145 FAKKYRLPYTLLSDEG---NKVRKEWGVPADFF-------GSLPGRQTYILDKNGVVQLIYNN  197 (215)
Q Consensus       145 ~~~~~~~~~~~~~d~~---~~~~~~~g~~~~~~-------g~~p~~~~~lid~~G~v~~~~~g  197 (215)
                      |+++++.+|+++.|..   ..+.+.||+.....       +..+.+.+||||++|+|++.+.+
T Consensus        80 ~~~~~~~~~~~l~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~lid~~G~i~~~~~~  142 (142)
T cd02968          80 YAKAFGPGWIGLTGTPEEIEALAKAFGVYYEKVPEDDGDYLVDHSAAIYLVDPDGKLVRYYGG  142 (142)
T ss_pred             HHHHhCCCcEEEECCHHHHHHHHHHhcEEEEecCCCCCceeEeccceEEEECCCCCEEEeecC
Confidence            9999999999999874   78999999875211       11123489999999999998754

Members of this family are required for the proper assembly of cytochrome c oxidase (COX). They contain a metal binding motif, typically CXXXC, which is located in a flexible loop. COX, the terminal enzyme in the respiratory chain, is imbedded in the inner mitochondrial membrane of all eukaryotes and in the plasma membrane of some prokaryotes. It is composed of two subunits, COX I and COX II. It has been proposed that Sco1 specifically delivers copper to the CuA site, a dinuclear copper center, of the COX II subunit. Mutations in human Sco1 and Sco2 cause fatal infantile hepatoencephalomyopathy and cardioencephalomyopathy, respectively. Both disorders are associated with severe COX deficiency in affected tissues. More recently, it has been argued that the redox sensitivity of the copper binding properti

>PRK10606 btuE putative glutathione peroxidase; Provisional

Probab=99.90  E-value=2.2e-22  Score=155.67  Aligned_cols=139  Identities=12%  Similarity=0.216  Sum_probs=108.4

Q ss_pred             CCCCCeEEeCCCCCeeecCCcCCCcEEEEEEcCCCChhhHHHHHHHHHHHHHHHHcCcEEEEEeC--------CCHHHHH
Q 028030           72 QAPPSFTLKDQEGRNVSLSKFKGKPVVVYFYPADETPGCTKQACAFRDSYEKFKKAGAEVIGISG--------DDSSSHK  143 (215)
Q Consensus        72 ~~~P~f~l~~~~g~~~~l~~~~gk~~ll~f~~a~~C~~C~~~~~~l~~l~~~~~~~~v~vv~vs~--------d~~~~~~  143 (215)
                      ..+++|++.+.+|+.++|++++||++||+|| |+||+.|. +++.|++++++|+++|++||+|+.        ++.++++
T Consensus         3 ~~~~~f~~~~~~G~~v~Ls~~~GKvvLVvf~-AS~C~~~~-q~~~L~~L~~~y~~~gl~Vlg~p~nqf~~qe~~~~~ei~   80 (183)
T PRK10606          3 DSILTTVVTTIDGEVTTLEKYAGNVLLIVNV-ASKCGLTP-QYEQLENIQKAWADQGFVVLGFPCNQFLGQEPGSDEEIK   80 (183)
T ss_pred             CCccCcEeECCCCCEEeHHHhCCCEEEEEEE-eCCCCCcH-HHHHHHHHHHHHhhCCeEEEEeeccccccCCCCCHHHHH
Confidence            4689999999999999999999999999999 99999885 799999999999999999999987        4678999


Q ss_pred             HHHH-HcCCCeEEE--EcCCh----hHHHHhCCCcc-----------------------CCCCCCccEEEEEcCCCcEEE
Q 028030          144 AFAK-KYRLPYTLL--SDEGN----KVRKEWGVPAD-----------------------FFGSLPGRQTYILDKNGVVQL  193 (215)
Q Consensus       144 ~~~~-~~~~~~~~~--~d~~~----~~~~~~g~~~~-----------------------~~g~~p~~~~~lid~~G~v~~  193 (215)
                      +|++ +++++||++  .|.++    .+++.+--...                       ......++..||||++|+++.
T Consensus        81 ~f~~~~~g~~Fpv~~k~dvnG~~~~pl~~~Lk~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~i~WNF~KFLv~~~G~vv~  160 (183)
T PRK10606         81 TYCRTTWGVTFPMFSKIEVNGEGRHPLYQKLIAAAPTAVAPEESGFYARMVSKGRAPLYPDDILWNFEKFLVGRDGQVIQ  160 (183)
T ss_pred             HHHHHccCCCceeEEEEccCCCCCCHHHHHHHHhCCCCcCccccchhhhhhccccccccCCcccccCEEEEECCCCcEEE
Confidence            9997 799999999  44332    34443311000                       001233678999999999999


Q ss_pred             EEeCCCCCCc--cHHHHHHHH
Q 028030          194 IYNNQFQPEK--HIDETLKFL  212 (215)
Q Consensus       194 ~~~g~~~~~~--~~~~il~~l  212 (215)
                      +|.+...+..  ..++|.++|
T Consensus       161 r~~~~~~p~~~~i~~~i~~~l  181 (183)
T PRK10606        161 RFSPDMTPEDPIVMESIKLAL  181 (183)
T ss_pred             EECCCCCCCHHHHHHHHHHHh
Confidence            9998776653  334443333

>PRK14018 trifunctional thioredoxin/methionine sulfoxide reductase A/B protein; Provisional

Probab=99.89  E-value=4.6e-22  Score=174.58  Aligned_cols=132  Identities=18%  Similarity=0.290  Sum_probs=114.4

Q ss_pred             CCCCCCCCCeEEeCCCCCeeecCCcCCCcEEEEEEcCCCChhhHHHHHHHHHHHHHHHHcCcEEEEEeCC------CHHH
Q 028030           68 VSKGQAPPSFTLKDQEGRNVSLSKFKGKPVVVYFYPADETPGCTKQACAFRDSYEKFKKAGAEVIGISGD------DSSS  141 (215)
Q Consensus        68 ~~~g~~~P~f~l~~~~g~~~~l~~~~gk~~ll~f~~a~~C~~C~~~~~~l~~l~~~~~~~~v~vv~vs~d------~~~~  141 (215)
                      ...++.+|+|++.|.+|+.+.++  +||++||+|| |+||++|+.++|.|++++++++.++++||+|+.+      +.+.
T Consensus        32 ~~~~~~lP~f~l~D~dG~~v~ls--kGKpVvV~FW-ATWCppCk~emP~L~eL~~e~k~~~v~VI~Vs~~~~~~e~~~~~  108 (521)
T PRK14018         32 ATVPHTLSTLKTADNRPASVYLK--KDKPTLIKFW-ASWCPLCLSELGETEKWAQDAKFSSANLITVASPGFLHEKKDGD  108 (521)
T ss_pred             ccccCCCCCeEeecCCCceeecc--CCCEEEEEEE-cCCCHHHHHHHHHHHHHHHHhccCCeEEEEEecccccccccHHH
Confidence            66778999999999999999987  7999999999 9999999999999999999998778999999863      3467


Q ss_pred             HHHHHHHcCC-CeEEEEcCChhHHHHhCCCccCCCCCCccEEEEEcCCCcEEEEEeCCCCCCccHHHHHH
Q 028030          142 HKAFAKKYRL-PYTLLSDEGNKVRKEWGVPADFFGSLPGRQTYILDKNGVVQLIYNNQFQPEKHIDETLK  210 (215)
Q Consensus       142 ~~~~~~~~~~-~~~~~~d~~~~~~~~~g~~~~~~g~~p~~~~~lid~~G~v~~~~~g~~~~~~~~~~il~  210 (215)
                      +++|++..++ .++++.|.++++.+.|++..     +|  +++|||++|+|+....|... .+.+.+.++
T Consensus       109 ~~~~~~~~~y~~~pV~~D~~~~lak~fgV~g-----iP--Tt~IIDkdGkIV~~~~G~~~-~eeL~a~Ie  170 (521)
T PRK14018        109 FQKWYAGLDYPKLPVLTDNGGTLAQSLNISV-----YP--SWAIIGKDGDVQRIVKGSIS-EAQALALIR  170 (521)
T ss_pred             HHHHHHhCCCcccceeccccHHHHHHcCCCC-----cC--eEEEEcCCCeEEEEEeCCCC-HHHHHHHHH
Confidence            7888888776 48999999999999999997     99  99999999999999999653 233344443

>cd03008 TryX_like_RdCVF Tryparedoxin (TryX)-like family, Rod-derived cone viability factor (RdCVF) subfamily; RdCVF is a thioredoxin (TRX)-like protein specifically expressed in photoreceptors

Probab=99.89  E-value=1.8e-22  Score=150.46  Aligned_cols=103  Identities=17%  Similarity=0.343  Sum_probs=88.2

Q ss_pred             CeeecCCcCCCcEEEEEEcCCCChhhHHHHHHHHHHHHHHHHc-------CcEEEEEeCCC-HHHHHHHHHHcCCCeEEE
Q 028030           85 RNVSLSKFKGKPVVVYFYPADETPGCTKQACAFRDSYEKFKKA-------GAEVIGISGDD-SSSHKAFAKKYRLPYTLL  156 (215)
Q Consensus        85 ~~~~l~~~~gk~~ll~f~~a~~C~~C~~~~~~l~~l~~~~~~~-------~v~vv~vs~d~-~~~~~~~~~~~~~~~~~~  156 (215)
                      ..+++++++||+++|+|| |+||++|+.++|.|.+++++++++       ++++|+|+.|. .+.+++|+++++++|+.+
T Consensus        16 ~~~~ls~~kgk~vlL~Fw-AsWCppCr~e~P~L~~ly~~~~~~~~~~~~~~~~vV~Vs~D~~~~~~~~f~~~~~~~~~~~   94 (146)
T cd03008          16 EREIVARLENRVLLLFFG-AVVSPQCQLFAPKLKDFFVRLTDEFYVDRSAQLALVYVSMDQSEQQQESFLKDMPKKWLFL   94 (146)
T ss_pred             ccccHHHhCCCEEEEEEE-CCCChhHHHHHHHHHHHHHHHHhhcccccCCCEEEEEEECCCCHHHHHHHHHHCCCCceee
Confidence            346788999999999999 999999999999999999988753       69999999985 467899999999876442


Q ss_pred             --Ec-CChhHHHHhCCCccCCCCCCccEEEEEcCCCcEEEEE
Q 028030          157 --SD-EGNKVRKEWGVPADFFGSLPGRQTYILDKNGVVQLIY  195 (215)
Q Consensus       157 --~d-~~~~~~~~~g~~~~~~g~~p~~~~~lid~~G~v~~~~  195 (215)
                        .+ ..+.+.+.|++..     +|  ++||||++|+|+...
T Consensus        95 p~~~~~~~~l~~~y~v~~-----iP--t~vlId~~G~Vv~~~  129 (146)
T cd03008          95 PFEDEFRRELEAQFSVEE-----LP--TVVVLKPDGDVLAAN  129 (146)
T ss_pred             cccchHHHHHHHHcCCCC-----CC--EEEEECCCCcEEeeC
Confidence              33 3468999999987     99  999999999999663

RdCVF was isolated and identified as a factor that supports cone survival in retinal cultures. Cone photoreceptor loss is responsible for the visual handicap resulting from the inherited disease, retinitis pigmentosa. RdCVF shows 33% similarity to TRX but does not exhibit any detectable thiol oxidoreductase activity.

>TIGR01626 ytfJ_HI0045 conserved hypothetical protein YtfJ-family, TIGR01626

Probab=99.88  E-value=2.4e-22  Score=154.77  Aligned_cols=136  Identities=21%  Similarity=0.248  Sum_probs=111.5

Q ss_pred             ccCCCCCCCCCeEEeCC----------CCCeeecCCcCCCcEEEEEEcCCCChhhHHHHHHHHHHHHHHHHcCcEE----
Q 028030           66 AKVSKGQAPPSFTLKDQ----------EGRNVSLSKFKGKPVVVYFYPADETPGCTKQACAFRDSYEKFKKAGAEV----  131 (215)
Q Consensus        66 ~~~~~g~~~P~f~l~~~----------~g~~~~l~~~~gk~~ll~f~~a~~C~~C~~~~~~l~~l~~~~~~~~v~v----  131 (215)
                      -+++.|+++|...+.|.          +.+.++.++++||+.||+|| |+||++|+.++|.|.++    +++|+.+    
T Consensus        21 ~~~~~~~~~p~v~~~~~ge~~~~~~~~~y~~~~~~~l~GKV~lvn~~-Aswc~~c~~e~P~l~~l----~~~~~~~~~y~   95 (184)
T TIGR01626        21 HNLQVEQSVPSVGVSEYGEIVLSGKDTVYQPWGSAELAGKVRVVHHI-AGRTSAKEXNASLIDAI----KAAKFPPVKYQ   95 (184)
T ss_pred             hhhhcCCcCCceEecCCceEEEcCCcccceeccHHHcCCCEEEEEEE-ecCCChhhccchHHHHH----HHcCCCccccc
Confidence            45788999998887653          34667788899999999999 99999999999999999    5568999    


Q ss_pred             --EEEeCCCH-----HHHHHHHHHcCCCeE---EEEcCChhHHHHhCCCccCCCCCCccEE-EEEcCCCcEEEEEeCCCC
Q 028030          132 --IGISGDDS-----SSHKAFAKKYRLPYT---LLSDEGNKVRKEWGVPADFFGSLPGRQT-YILDKNGVVQLIYNNQFQ  200 (215)
Q Consensus       132 --v~vs~d~~-----~~~~~~~~~~~~~~~---~~~d~~~~~~~~~g~~~~~~g~~p~~~~-~lid~~G~v~~~~~g~~~  200 (215)
                        ++|+.|+.     .-++.|+++.+..||   ++.|+++.+...||+..     +|  .+ ||||++|+|++.+.|...
T Consensus        96 ~t~~IN~dd~~~~~~~fVk~fie~~~~~~P~~~vllD~~g~v~~~~gv~~-----~P--~T~fVIDk~GkVv~~~~G~l~  168 (184)
T TIGR01626        96 TTTIINADDAIVGTGMFVKSSAKKGKKENPWSQVVLDDKGAVKNAWQLNS-----ED--SAIIVLDKTGKVKFVKEGALS  168 (184)
T ss_pred             ceEEEECccchhhHHHHHHHHHHHhcccCCcceEEECCcchHHHhcCCCC-----CC--ceEEEECCCCcEEEEEeCCCC
Confidence              99999863     235666667777777   88999999999999987     87  67 899999999999999754


Q ss_pred             CCccHHHHHHHHhc
Q 028030          201 PEKHIDETLKFLQS  214 (215)
Q Consensus       201 ~~~~~~~il~~l~~  214 (215)
                      . +.+++++.+|++
T Consensus       169 ~-ee~e~~~~li~~  181 (184)
T TIGR01626       169 D-SDIQTVISLVNG  181 (184)
T ss_pred             H-HHHHHHHHHHHH
Confidence            4 345667776654

This model represents sequences from gamma proteobacteria that are related to the E. coli protein, YtfJ.

>cd02966 TlpA_like_family TlpA-like family; composed of TlpA, ResA, DsbE and similar proteins

Probab=99.88  E-value=7.8e-22  Score=140.25  Aligned_cols=114  Identities=35%  Similarity=0.651  Sum_probs=106.9

Q ss_pred             CeEEeCCCCCeeecCCcCCCcEEEEEEcCCCChhhHHHHHHHHHHHHHHHHcCcEEEEEeCCC--HHHHHHHHHHcCCCe
Q 028030           76 SFTLKDQEGRNVSLSKFKGKPVVVYFYPADETPGCTKQACAFRDSYEKFKKAGAEVIGISGDD--SSSHKAFAKKYRLPY  153 (215)
Q Consensus        76 ~f~l~~~~g~~~~l~~~~gk~~ll~f~~a~~C~~C~~~~~~l~~l~~~~~~~~v~vv~vs~d~--~~~~~~~~~~~~~~~  153 (215)
                      +|++.+.+|+.+++.+++||+++|+|| ++||+.|+..++.|.++.+++++.++.+++|+.|.  ++.+++|.++++.+|
T Consensus         1 ~~~~~~~~g~~~~~~~~~~k~~ll~f~-~~~C~~C~~~~~~l~~~~~~~~~~~~~~~~v~~d~~~~~~~~~~~~~~~~~~   79 (116)
T cd02966           1 DFSLPDLDGKPVSLSDLKGKVVLVNFW-ASWCPPCRAEMPELEALAKEYKDDGVEVVGVNVDDDDPAAVKAFLKKYGITF   79 (116)
T ss_pred             CccccCCCCCEeehHHcCCCEEEEEee-cccChhHHHHhHHHHHHHHHhCCCCeEEEEEECCCCCHHHHHHHHHHcCCCc
Confidence            578899999999999999999999999 99999999999999999999987789999999987  899999999999999


Q ss_pred             EEEEcCChhHHHHhCCCccCCCCCCccEEEEEcCCCcEEEEEeC
Q 028030          154 TLLSDEGNKVRKEWGVPADFFGSLPGRQTYILDKNGVVQLIYNN  197 (215)
Q Consensus       154 ~~~~d~~~~~~~~~g~~~~~~g~~p~~~~~lid~~G~v~~~~~g  197 (215)
                      +++.|...++.+.|++..     +|  .++|+|++|+|++.+.|
T Consensus        80 ~~~~~~~~~~~~~~~~~~-----~P--~~~l~d~~g~v~~~~~g  116 (116)
T cd02966          80 PVLLDPDGELAKAYGVRG-----LP--TTFLIDRDGRIRARHVG  116 (116)
T ss_pred             ceEEcCcchHHHhcCcCc-----cc--eEEEECCCCcEEEEecC
Confidence            999999999999999986     88  99999999999988765

TlpA, ResA and DsbE are bacterial protein disulfide reductases with important roles in cytochrome maturation. They are membrane-anchored proteins with a soluble TRX domain containing a CXXC motif located in the periplasm. The TRX domains of this family contain an insert, approximately 25 residues in length, which correspond to an extra alpha helix and a beta strand when compared with TRX. TlpA catalyzes an essential reaction in the biogenesis of cytochrome aa3, while ResA and DsbE are essential proteins in cytochrome c maturation. Also included in this family are proteins containing a TlpA-like TRX domain with domain architectures similar to E. coli DipZ protein, and the N-terminal TRX domain of PilB protein from Neisseria which acts as a disulfide reductase that can recylce methionine sulfoxide reductases.

>cd03011 TlpA_like_ScsD_MtbDsbE TlpA-like family, suppressor for copper sensitivity D protein (ScsD) and actinobacterial DsbE homolog subfamily; composed of ScsD, the DsbE homolog of Mycobacterium tuberculosis (MtbDsbE) and similar proteins, all containing a redox-active CXXC motif

Probab=99.87  E-value=1.4e-21  Score=142.12  Aligned_cols=114  Identities=24%  Similarity=0.452  Sum_probs=103.3

Q ss_pred             CCeEEeCCCCCeeecCCcCCCcEEEEEEcCCCChhhHHHHHHHHHHHHHHHHcCcEEEEEeCC--CHHHHHHHHHHcCCC
Q 028030           75 PSFTLKDQEGRNVSLSKFKGKPVVVYFYPADETPGCTKQACAFRDSYEKFKKAGAEVIGISGD--DSSSHKAFAKKYRLP  152 (215)
Q Consensus        75 P~f~l~~~~g~~~~l~~~~gk~~ll~f~~a~~C~~C~~~~~~l~~l~~~~~~~~v~vv~vs~d--~~~~~~~~~~~~~~~  152 (215)
                      |+|++++.+|+.+++++++||++||+|| ++||++|+..++.|++++++     +.+++|+.|  +++.+++|.++++++
T Consensus         1 p~f~l~~~~g~~~~~~~~~~k~~vl~F~-~~~C~~C~~~~~~l~~~~~~-----~~~i~i~~~~~~~~~~~~~~~~~~~~   74 (123)
T cd03011           1 PLFTATTLDGEQFDLESLSGKPVLVYFW-ATWCPVCRFTSPTVNQLAAD-----YPVVSVALRSGDDGAVARFMQKKGYG   74 (123)
T ss_pred             CCceeecCCCCEeeHHHhCCCEEEEEEE-CCcChhhhhhChHHHHHHhh-----CCEEEEEccCCCHHHHHHHHHHcCCC
Confidence            7999999999999999999999999999 99999999999999999765     678888875  478999999999999


Q ss_pred             eEEEEcCChhHHHHhCCCccCCCCCCccEEEEEcCCCcEEEEEeCCCCCC
Q 028030          153 YTLLSDEGNKVRKEWGVPADFFGSLPGRQTYILDKNGVVQLIYNNQFQPE  202 (215)
Q Consensus       153 ~~~~~d~~~~~~~~~g~~~~~~g~~p~~~~~lid~~G~v~~~~~g~~~~~  202 (215)
                      |+++.|+++++.+.|++..     +|  +++++|++| |++.+.|..+.+
T Consensus        75 ~~~~~d~~~~~~~~~~i~~-----~P--~~~vid~~g-i~~~~~g~~~~~  116 (123)
T cd03011          75 FPVINDPDGVISARWGVSV-----TP--AIVIVDPGG-IVFVTTGVTSEW  116 (123)
T ss_pred             ccEEECCCcHHHHhCCCCc-----cc--EEEEEcCCC-eEEEEeccCCHH
Confidence            9999999999999999987     88  999999999 999998865443

The Salmonella typhimurium ScsD is a thioredoxin-like protein which confers copper tolerance to copper-sensitive mutants of E. coli. MtbDsbE has been characterized as an oxidase in vitro, catalyzing the disulfide bond formation of substrates like hirudin. The reduced form of MtbDsbE is more stable than its oxidized form, consistent with an oxidase function. This is in contrast to the function of DsbE from gram-negative bacteria which is a specific reductase of apocytochrome c.

>PLN02919 haloacid dehalogenase-like hydrolase family protein

Probab=99.87  E-value=1.7e-21  Score=185.04  Aligned_cols=136  Identities=18%  Similarity=0.295  Sum_probs=118.1

Q ss_pred             ccCCCCCCCCCeEEeC--CCCCeeec-CCcCCCcEEEEEEcCCCChhhHHHHHHHHHHHHHHHHcCcEEEEEeC---C--
Q 028030           66 AKVSKGQAPPSFTLKD--QEGRNVSL-SKFKGKPVVVYFYPADETPGCTKQACAFRDSYEKFKKAGAEVIGISG---D--  137 (215)
Q Consensus        66 ~~~~~g~~~P~f~l~~--~~g~~~~l-~~~~gk~~ll~f~~a~~C~~C~~~~~~l~~l~~~~~~~~v~vv~vs~---d--  137 (215)
                      .....|.++|+|...+  .+|+++++ ++++||++||+|| ++||++|+.++|.|++++++|+++++.||+|+.   |  
T Consensus       389 ~~~~~g~~~p~f~~~~~~~~g~~~~l~~~lkGK~vll~FW-AsWC~pC~~e~P~L~~l~~~y~~~~~~vvgV~~~~~D~~  467 (1057)
T PLN02919        389 ESKKTATKVPEFPPKLDWLNTAPLQFRRDLKGKVVILDFW-TYCCINCMHVLPDLEFLEKKYKDQPFTVVGVHSAKFDNE  467 (1057)
T ss_pred             hccccCCcCCCCcccccccCCccccchhhcCCCEEEEEEE-CCcChhHHhHhHHHHHHHHHcCCCCeEEEEEeccccccc
Confidence            3456799999999876  78999998 5899999999999 999999999999999999999988999999973   3  


Q ss_pred             -CHHHHHHHHHHcCCCeEEEEcCChhHHHHhCCCccCCCCCCccEEEEEcCCCcEEEEEeCCCCCCccHHHHHH
Q 028030          138 -DSSSHKAFAKKYRLPYTLLSDEGNKVRKEWGVPADFFGSLPGRQTYILDKNGVVQLIYNNQFQPEKHIDETLK  210 (215)
Q Consensus       138 -~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~g~~~~~~g~~p~~~~~lid~~G~v~~~~~g~~~~~~~~~~il~  210 (215)
                       +.+++++++++++++|+++.|.+.++.+.|++..     +|  +++|||++|+|+.++.|.... +.++++++
T Consensus       468 ~~~~~~~~~~~~~~i~~pvv~D~~~~~~~~~~V~~-----iP--t~ilid~~G~iv~~~~G~~~~-~~l~~~l~  533 (1057)
T PLN02919        468 KDLEAIRNAVLRYNISHPVVNDGDMYLWRELGVSS-----WP--TFAVVSPNGKLIAQLSGEGHR-KDLDDLVE  533 (1057)
T ss_pred             ccHHHHHHHHHHhCCCccEEECCchHHHHhcCCCc-----cc--eEEEECCCCeEEEEEecccCH-HHHHHHHH
Confidence             3578899999999999999999999999999987     99  999999999999998885432 33444443

>cd02964 TryX_like_family Tryparedoxin (TryX)-like family; composed of TryX and related proteins including nucleoredoxin (NRX), rod-derived cone viability factor (RdCVF) and the nematode homolog described as a 16-kD class of TRX

Probab=99.84  E-value=2.2e-20  Score=137.72  Aligned_cols=104  Identities=25%  Similarity=0.398  Sum_probs=88.9

Q ss_pred             CeeecCCcCCCcEEEEEEcCCCChhhHHHHHHHHHHHHHHHHc--CcEEEEEeCCC-HHHHHHHHHHcCCCeEEEE--c-
Q 028030           85 RNVSLSKFKGKPVVVYFYPADETPGCTKQACAFRDSYEKFKKA--GAEVIGISGDD-SSSHKAFAKKYRLPYTLLS--D-  158 (215)
Q Consensus        85 ~~~~l~~~~gk~~ll~f~~a~~C~~C~~~~~~l~~l~~~~~~~--~v~vv~vs~d~-~~~~~~~~~~~~~~~~~~~--d-  158 (215)
                      +++++++++||++||+|| ++||++|+.++|.|++++++++++  +++|++|+.|. .+++++|+++++ .|..+.  | 
T Consensus         8 ~~v~l~~~~Gk~vll~F~-atwC~~C~~~~p~l~~l~~~~~~~~~~v~vi~Vs~d~~~~~~~~~~~~~~-~~~~~~~~d~   85 (132)
T cd02964           8 GVVPVSALEGKTVGLYFS-ASWCPPCRAFTPKLVEFYEKLKEEGKNFEIVFVSRDRSEESFNEYFSEMP-PWLAVPFEDE   85 (132)
T ss_pred             ccccHHHhCCCEEEEEEE-CCCCchHHHHHHHHHHHHHHHhhcCCCeEEEEEecCCCHHHHHHHHhcCC-CeEeeccCcH
Confidence            589999999999999999 999999999999999999999875  79999999975 478899999998 655442  2 


Q ss_pred             -CChhHHHHhCCCccCCCCCCccEEEEEcCCCcEEEEEeC
Q 028030          159 -EGNKVRKEWGVPADFFGSLPGRQTYILDKNGVVQLIYNN  197 (215)
Q Consensus       159 -~~~~~~~~~g~~~~~~g~~p~~~~~lid~~G~v~~~~~g  197 (215)
                       ....+.+.|++..     +|  +++|||++|+|+.....
T Consensus        86 ~~~~~~~~~~~v~~-----iP--t~~lid~~G~iv~~~~~  118 (132)
T cd02964          86 ELRELLEKQFKVEG-----IP--TLVVLKPDGDVVTTNAR  118 (132)
T ss_pred             HHHHHHHHHcCCCC-----CC--EEEEECCCCCEEchhHH
Confidence             2356778899987     89  99999999999876543

Most members of this family, except RdCVF, are protein disulfide oxidoreductases containing an active site CXXC motif, similar to TRX.

>cd03009 TryX_like_TryX_NRX Tryparedoxin (TryX)-like family, TryX and nucleoredoxin (NRX) subfamily; TryX and NRX are thioredoxin (TRX)-like protein disulfide oxidoreductases that alter the redox state of target proteins via the reversible oxidation of an active center CXXC motif

Probab=99.84  E-value=7.5e-21  Score=139.96  Aligned_cols=110  Identities=25%  Similarity=0.403  Sum_probs=91.6

Q ss_pred             EeCCCCCeeecCCcCCCcEEEEEEcCCCChhhHHHHHHHHHHHHHHHHc--CcEEEEEeCCCH-HHHHHHHHHcCCC-eE
Q 028030           79 LKDQEGRNVSLSKFKGKPVVVYFYPADETPGCTKQACAFRDSYEKFKKA--GAEVIGISGDDS-SSHKAFAKKYRLP-YT  154 (215)
Q Consensus        79 l~~~~g~~~~l~~~~gk~~ll~f~~a~~C~~C~~~~~~l~~l~~~~~~~--~v~vv~vs~d~~-~~~~~~~~~~~~~-~~  154 (215)
                      +.|.+|+.+++++++||++||+|| ++||++|+.++|.|++++++++++  +++|++|+.|.. +.++++++++++. ++
T Consensus         3 l~~~~G~~v~l~~~~gk~vll~Fw-a~wC~~C~~~~p~l~~~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~~   81 (131)
T cd03009           3 LLRNDGGKVPVSSLEGKTVGLYFS-ASWCPPCRAFTPKLVEFYEKLKESGKNFEIVFISWDRDEESFNDYFSKMPWLAVP   81 (131)
T ss_pred             ccccCCCCccHHHhCCcEEEEEEE-CCCChHHHHHhHHHHHHHHHHHhcCCCEEEEEEECCCCHHHHHHHHHcCCeeEcc
Confidence            468899999999999999999999 999999999999999999999875  799999999754 6778888776532 22


Q ss_pred             EE-EcCChhHHHHhCCCccCCCCCCccEEEEEcCCCcEEEEEe
Q 028030          155 LL-SDEGNKVRKEWGVPADFFGSLPGRQTYILDKNGVVQLIYN  196 (215)
Q Consensus       155 ~~-~d~~~~~~~~~g~~~~~~g~~p~~~~~lid~~G~v~~~~~  196 (215)
                      +. .|....+.+.||+..     +|  +++|||++|+|+....
T Consensus        82 ~~~~~~~~~~~~~~~v~~-----~P--~~~lid~~G~i~~~~~  117 (131)
T cd03009          82 FSDRERRSRLNRTFKIEG-----IP--TLIILDADGEVVTTDA  117 (131)
T ss_pred             cCCHHHHHHHHHHcCCCC-----CC--EEEEECCCCCEEcccH
Confidence            11 234567899999987     89  9999999999987643

TryX is involved in the regulation of oxidative stress in parasitic trypanosomatids by reducing TryX peroxidase, which in turn catalyzes the reduction of hydrogen peroxide and organic hydroperoxides. TryX derives reducing equivalents from reduced trypanothione, a polyamine peptide conjugate unique to trypanosomatids, which is regenerated by the NADPH-dependent flavoprotein trypanothione reductase. Vertebrate NRX is a 400-amino acid nuclear protein with one redox active TRX domain containing a CPPC active site motif followed by one redox inactive TRX-like domain. Mouse NRX transcripts are expressed in all adult tissues but is restricted to the nervous system and limb buds in embryos. Plant NRX, longer than the

>PRK13728 conjugal transfer protein TrbB; Provisional

Probab=99.81  E-value=2.3e-19  Score=137.53  Aligned_cols=109  Identities=20%  Similarity=0.345  Sum_probs=89.9

Q ss_pred             CCCCCCCCeEEeCCCCCeeecCCcCCCcEEEEEEcCCCChhhHHHHHHHHHHHHHHHHcCcEEEEEeCCCHHHHHHHHHH
Q 028030           69 SKGQAPPSFTLKDQEGRNVSLSKFKGKPVVVYFYPADETPGCTKQACAFRDSYEKFKKAGAEVIGISGDDSSSHKAFAKK  148 (215)
Q Consensus        69 ~~g~~~P~f~l~~~~g~~~~l~~~~gk~~ll~f~~a~~C~~C~~~~~~l~~l~~~~~~~~v~vv~vs~d~~~~~~~~~~~  148 (215)
                      .+..+.|+|++.  +|+.+++++++    ||+|| ++||++|++++|.|++++++|   |++|++|+.|+..        
T Consensus        50 ~~~~~~~~f~l~--dG~~v~lsd~~----lV~Fw-aswCp~C~~e~P~L~~l~~~~---g~~Vi~Vs~D~~~--------  111 (181)
T PRK13728         50 TEKPAPRWFRLS--NGRQVNLADWK----VVLFM-QGHCPYCHQFDPVLKQLAQQY---GFSVFPYTLDGQG--------  111 (181)
T ss_pred             cCCCCCCccCCC--CCCEeehhHce----EEEEE-CCCCHhHHHHHHHHHHHHHHc---CCEEEEEEeCCCC--------
Confidence            455677888885  99999999987    88899 999999999999999999887   5999999988553        


Q ss_pred             cCCCeEEEEc-CChhHHHHhCC--CccCCCCCCccEEEEEcCCCcEEE-EEeCCCCCCc
Q 028030          149 YRLPYTLLSD-EGNKVRKEWGV--PADFFGSLPGRQTYILDKNGVVQL-IYNNQFQPEK  203 (215)
Q Consensus       149 ~~~~~~~~~d-~~~~~~~~~g~--~~~~~g~~p~~~~~lid~~G~v~~-~~~g~~~~~~  203 (215)
                       ...||++.| ..+.+.+.||+  ..     +|  ++||||++|++++ .+.|..+.+.
T Consensus       112 -~~~fPv~~dd~~~~~~~~~g~~~~~-----iP--ttfLId~~G~i~~~~~~G~~~~~~  162 (181)
T PRK13728        112 -DTAFPEALPAPPDVMQTFFPNIPVA-----TP--TTFLVNVNTLEALPLLQGATDAAG  162 (181)
T ss_pred             -CCCCceEecCchhHHHHHhCCCCCC-----CC--eEEEEeCCCcEEEEEEECCCCHHH
Confidence             268999985 56678888985  34     88  9999999999975 6888665433

>COG0386 BtuE Glutathione peroxidase [Posttranslational modification, protein turnover, chaperones]

Probab=99.81  E-value=7.7e-19  Score=128.61  Aligned_cols=140  Identities=23%  Similarity=0.319  Sum_probs=111.3

Q ss_pred             CCCCCeEEeCCCCCeeecCCcCCCcEEEEEEcCCCChhhHHHHHHHHHHHHHHHHcCcEEEEEeCC--------CHHHHH
Q 028030           72 QAPPSFTLKDQEGRNVSLSKFKGKPVVVYFYPADETPGCTKQACAFRDSYEKFKKAGAEVIGISGD--------DSSSHK  143 (215)
Q Consensus        72 ~~~P~f~l~~~~g~~~~l~~~~gk~~ll~f~~a~~C~~C~~~~~~l~~l~~~~~~~~v~vv~vs~d--------~~~~~~  143 (215)
                      ..+.+|++++.+|++++|++++||++||+.. |+-|+.-. ++..|+.|+++|+++|++|+++..+        +.++++
T Consensus         3 ~~~yd~~~~~~~G~~~~l~~~~GkVlLIVNt-ASkCGfTp-QYegLe~Ly~ky~~~Gf~VLgFPcNQF~~QEPg~~eEI~   80 (162)
T COG0386           3 MSIYDFSVKDIDGEPVSLSDYKGKVLLIVNT-ASKCGFTP-QYEGLEALYKKYKDKGFEVLGFPCNQFGGQEPGSDEEIA   80 (162)
T ss_pred             cccccceeeccCCCCccHHHhCCcEEEEEEc-ccccCCcH-hHHHHHHHHHHHhhCCcEEEeccccccccCCCCCHHHHH
Confidence            3577999999999999999999999999999 99999666 9999999999999999999999863        678999


Q ss_pred             HHHH-HcCCCeEEEE--c----CChhHHHHhCCCcc----CCCCCCccEEEEEcCCCcEEEEEeCCCCCCccHHHHHHHH
Q 028030          144 AFAK-KYRLPYTLLS--D----EGNKVRKEWGVPAD----FFGSLPGRQTYILDKNGVVQLIYNNQFQPEKHIDETLKFL  212 (215)
Q Consensus       144 ~~~~-~~~~~~~~~~--d----~~~~~~~~~g~~~~----~~g~~p~~~~~lid~~G~v~~~~~g~~~~~~~~~~il~~l  212 (215)
                      +|++ .|+++||++.  |    +.+.+++.+--...    ....-.+++.||||++|+|+.++.....+++...+|-++|
T Consensus        81 ~fC~~~YgVtFp~f~Ki~VnG~~a~PLy~~L~~~~~g~~~~~~IkWNFtKFLvdr~G~VV~Rf~p~t~P~d~~~~Ie~lL  160 (162)
T COG0386          81 KFCQLNYGVTFPMFSKIDVNGKNAHPLYKYLKEQKPGKLGGKDIKWNFTKFLVDRDGNVVKRFSPKTKPEDIELAIEKLL  160 (162)
T ss_pred             HHHHhccCceeeeeeEEeecCCCCCcHHHHHHhcCCCCccCCccceeeEEEEEcCCCcEEEeeCCCCChhhHHHHHHHHh
Confidence            9996 8999999984  2    22334444322211    1112347899999999999999999877776556555555


Q ss_pred             h
Q 028030          213 Q  213 (215)
Q Consensus       213 ~  213 (215)
                      .
T Consensus       161 ~  161 (162)
T COG0386         161 A  161 (162)
T ss_pred             c
Confidence            3

>PF13905 Thioredoxin_8: Thioredoxin-like; PDB: 1FG4_A 1I5G_A 1OC8_B 1O6J_A 1OC9_B 1O81_A 3FKF_A 1O85_A 1O7U_A 1O8W_A

Probab=99.80  E-value=9.7e-19  Score=121.49  Aligned_cols=90  Identities=31%  Similarity=0.630  Sum_probs=78.2

Q ss_pred             CCcEEEEEEcCCCChhhHHHHHHHHHHHHHHH-HcCcEEEEEeCCC-HHHHHHHHHHcCCCeEEEEcC---ChhHHHHhC
Q 028030           94 GKPVVVYFYPADETPGCTKQACAFRDSYEKFK-KAGAEVIGISGDD-SSSHKAFAKKYRLPYTLLSDE---GNKVRKEWG  168 (215)
Q Consensus        94 gk~~ll~f~~a~~C~~C~~~~~~l~~l~~~~~-~~~v~vv~vs~d~-~~~~~~~~~~~~~~~~~~~d~---~~~~~~~~g  168 (215)
                      ||+++|+|| ++||++|+.++|.|.+++++|+ +.+++||+|+.|. .+++++++++++.+|..+...   ...+.+.|+
T Consensus         1 gK~~ll~fw-a~~c~~c~~~~~~l~~l~~~~~~~~~v~~v~Vs~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~   79 (95)
T PF13905_consen    1 GKPVLLYFW-ASWCPPCKKELPKLKELYKKYKKKDDVEFVFVSLDEDEEEWKKFLKKNNFPWYNVPFDDDNNSELLKKYG   79 (95)
T ss_dssp             TSEEEEEEE--TTSHHHHHHHHHHHHHHHHHTTTTTEEEEEEE-SSSHHHHHHHHHTCTTSSEEEETTTHHHHHHHHHTT
T ss_pred             CCEEEEEEE-CCCCHHHHHHHHHHHHHHHHhCCCCCEEEEEEEeCCCHHHHHHHHHhcCCCceEEeeCcchHHHHHHHCC
Confidence            799999999 9999999999999999999999 5579999999985 489999999998887776533   567999999


Q ss_pred             CCccCCCCCCccEEEEEcCCCcE
Q 028030          169 VPADFFGSLPGRQTYILDKNGVV  191 (215)
Q Consensus       169 ~~~~~~g~~p~~~~~lid~~G~v  191 (215)
                      +..     +|  +++|+|++|+|
T Consensus        80 i~~-----iP--~~~lld~~G~I   95 (95)
T PF13905_consen   80 ING-----IP--TLVLLDPDGKI   95 (95)
T ss_dssp             -TS-----SS--EEEEEETTSBE
T ss_pred             CCc-----CC--EEEEECCCCCC
Confidence            998     99  99999999997

...

>KOG0852 consensus Alkyl hydroperoxide reductase, thiol specific antioxidant and related enzymes [Posttranslational modification, protein turnover, chaperones]

Probab=99.77  E-value=9.8e-18  Score=124.98  Aligned_cols=145  Identities=34%  Similarity=0.543  Sum_probs=127.0

Q ss_pred             CCCCCCCCeEEe---CCCCCeeecCCcCCCcEEEEEEcCCCChhhHHHHHHHHHHHHHHHHcCcEEEEEeCCCHHHHHHH
Q 028030           69 SKGQAPPSFTLK---DQEGRNVSLSKFKGKPVVVYFYPADETPGCTKQACAFRDSYEKFKKAGAEVIGISGDDSSSHKAF  145 (215)
Q Consensus        69 ~~g~~~P~f~l~---~~~g~~~~l~~~~gk~~ll~f~~a~~C~~C~~~~~~l~~l~~~~~~~~v~vv~vs~d~~~~~~~~  145 (215)
                      .+..+.|+|.-+   |-.-+.++|++++||++++.||+.++.-.|..+.-.+...++++++.|-+||++|+|+.+.+.+|
T Consensus         5 ~~~~p~p~fk~~aVVdG~f~e~~L~dy~gkyvvlfFyplDftfVcPteIiafSd~~~eF~~~n~eVig~S~DS~fshlAW   84 (196)
T KOG0852|consen    5 VVFKPAPDFKGTAVVDGEFKEIKLSDYKGKYVVLFFYPLDFTFVCPTEIIAFSDRAPEFRKLNTEVLGISTDSVFSHLAW   84 (196)
T ss_pred             ccCCCCCCcceeEEEcCcceEEeehhhcccEEEEEecCCceeeECchhhhhhhhhHHHHHhcCCeEEEEeccchhhhhhH
Confidence            455666888854   34447899999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHH----cC---CCeEEEEcCChhHHHHhCCCccCCCCCCccEEEEEcCCCcEEEEEeCCCCCCccHHHHHHHHhc
Q 028030          146 AKK----YR---LPYTLLSDEGNKVRKEWGVPADFFGSLPGRQTYILDKNGVVQLIYNNQFQPEKHIDETLKFLQS  214 (215)
Q Consensus       146 ~~~----~~---~~~~~~~d~~~~~~~~~g~~~~~~g~~p~~~~~lid~~G~v~~~~~g~~~~~~~~~~il~~l~~  214 (215)
                      +..    -|   +++|++.|.+.++.+.||+.....| ++-+-.|+||++|.++..-..+.......++++++++.
T Consensus        85 ~ntprk~gGlg~~~iPllsD~~~~IsrdyGvL~~~~G-~~lRglfIId~~gi~R~it~NDlpvgRSVdE~lRLvqA  159 (196)
T KOG0852|consen   85 INTPRKQGGLGPLNIPLLSDLNHEISRDYGVLKEDEG-IALRGLFIIDPDGILRQITINDLPVGRSVDETLRLVQA  159 (196)
T ss_pred             hcCchhhCCcCccccceeeccchhhHHhcCceecCCC-cceeeeEEEccccceEEeeecccCCCccHHHHHHHHHH
Confidence            962    33   4599999999999999999987666 66679999999999999888888888889999998864

>KOG0854 consensus Alkyl hydroperoxide reductase, thiol specific antioxidant and related enzymes [Posttranslational modification, protein turnover, chaperones]

Probab=99.76  E-value=1.2e-17  Score=124.68  Aligned_cols=148  Identities=23%  Similarity=0.398  Sum_probs=128.6

Q ss_pred             ccCCCCCCCCCeEEeCCCCCeeecCCcCC-CcEEEEEEcCCCChhhHHHHHHHHHHHHHHHHcCcEEEEEeCCCHHHHHH
Q 028030           66 AKVSKGQAPPSFTLKDQEGRNVSLSKFKG-KPVVVYFYPADETPGCTKQACAFRDSYEKFKKAGAEVIGISGDDSSSHKA  144 (215)
Q Consensus        66 ~~~~~g~~~P~f~l~~~~g~~~~l~~~~g-k~~ll~f~~a~~C~~C~~~~~~l~~l~~~~~~~~v~vv~vs~d~~~~~~~  144 (215)
                      ..+..|+.+|+|+..++.|+ +.+.|+.| .|.+|+-.|+++.|.|..++-++++++.+|.++|+..|++|+|+.+.++.
T Consensus         4 ~~l~lgd~~PNfea~Tt~g~-i~fhd~~gdSW~vLFSHPaDFTPVCTTElgr~Akl~pEF~KRnvKlialS~d~vesH~~   82 (224)
T KOG0854|consen    4 PRLRLGDTVPNFEADTTVGK-IKFHDYLGDSWGVLFSHPADFTPVCTTELGRFAKLAPEFDKRNVKLIALSVDDVESHKD   82 (224)
T ss_pred             CcccccCcCCCccccccccc-eehhhhcccceEEEecCcccCCcchhHHHHHHHhhChhhhhcCceEEEeehhhHHHHHH
Confidence            45789999999999999998 89999855 79999999999999999999999999999999999999999999888777


Q ss_pred             HHHHc-------C--CCeEEEEcCChhHHHHhCCCccC-CC--CCC--ccEEEEEcCCCcEEEEEeCCCCCCccHHHHHH
Q 028030          145 FAKKY-------R--LPYTLLSDEGNKVRKEWGVPADF-FG--SLP--GRQTYILDKNGVVQLIYNNQFQPEKHIDETLK  210 (215)
Q Consensus       145 ~~~~~-------~--~~~~~~~d~~~~~~~~~g~~~~~-~g--~~p--~~~~~lid~~G~v~~~~~g~~~~~~~~~~il~  210 (215)
                      |.+..       +  ++||++.|++++++-.||+.+.. .+  .+|  .+.+|+||++.+|+..+..+.....+.+++|+
T Consensus        83 Wi~DIks~~~~~~~~~~yPIIaD~~rela~~l~MlD~~e~~~~~~~~T~Ravfvi~pdkKirLs~lYP~ttGRN~dEiLR  162 (224)
T KOG0854|consen   83 WIKDIKSYAKVKNHSVPYPIIADPNRELAFLLNMLDPEEKKNIGDGKTVRAVFVIDPDKKIRLSFLYPSTTGRNFDEILR  162 (224)
T ss_pred             HHHHHHHHHhccCCCCCCCeecCCchhhhhhhcccCHhHcCCCCCCceEEEEEEECCCceEEEEEEcccccCcCHHHHHH
Confidence            77643       3  78999999999999999997531 11  122  56999999999999998888888999999999


Q ss_pred             HHhc
Q 028030          211 FLQS  214 (215)
Q Consensus       211 ~l~~  214 (215)
                      .|++
T Consensus       163 vids  166 (224)
T KOG0854|consen  163 VIDS  166 (224)
T ss_pred             HHHH
Confidence            8864

>KOG1651 consensus Glutathione peroxidase [Posttranslational modification, protein turnover, chaperones]

Probab=99.72  E-value=1.1e-16  Score=118.65  Aligned_cols=142  Identities=21%  Similarity=0.303  Sum_probs=109.8

Q ss_pred             CCCCCCeEEeCCCCCeeecCCcCCCcEEEEEEcCCCChhhHHHHHHHHHHHHHHHHcCcEEEEEeCC--------CHHHH
Q 028030           71 GQAPPSFTLKDQEGRNVSLSKFKGKPVVVYFYPADETPGCTKQACAFRDSYEKFKKAGAEVIGISGD--------DSSSH  142 (215)
Q Consensus        71 g~~~P~f~l~~~~g~~~~l~~~~gk~~ll~f~~a~~C~~C~~~~~~l~~l~~~~~~~~v~vv~vs~d--------~~~~~  142 (215)
                      -..+.+|+..|.+|+.++|++++||++||+.. |+.|+.-...+..|+.|+++|+++|++|+++..+        ..+++
T Consensus        11 ~~siydf~~~d~~G~~v~l~~yrGkV~LiVNV-AS~Cg~T~~~Y~~l~~L~~ky~~~Gl~ILaFPCNQFg~QEp~~n~Ei   89 (171)
T KOG1651|consen   11 KGSIYDFSAKDLDGEYVSLSQYRGKVVLIVNV-ASQCGLTESQYTELNELYEKYKDQGLEILAFPCNQFGNQEPGSNEEI   89 (171)
T ss_pred             hcceeeeEEecCCCCCccHHHhCCeEEEEEEc-ccccccchhcchhHHHHHHHHhhCCeEEEEeccccccCcCCCCcHHH
Confidence            36788999999999999999999999999999 9999999999999999999999999999999863        44677


Q ss_pred             HHHH-HHcCCCeEEEE--cC----ChhHHHHhCCCcc-CC--CCCCccEEEEEcCCCcEEEEEeCCCCCCccHHHHHHHH
Q 028030          143 KAFA-KKYRLPYTLLS--DE----GNKVRKEWGVPAD-FF--GSLPGRQTYILDKNGVVQLIYNNQFQPEKHIDETLKFL  212 (215)
Q Consensus       143 ~~~~-~~~~~~~~~~~--d~----~~~~~~~~g~~~~-~~--g~~p~~~~~lid~~G~v~~~~~g~~~~~~~~~~il~~l  212 (215)
                      ..++ .+++..|+++.  |.    ...+++-+--... ..  +.-.+++.||||+||+|+.+|.....+.....+|.++|
T Consensus        90 ~~f~~~r~~~~f~if~KidVNG~~~~PlykfLK~~~~~~lg~~IkWNF~KFLVd~~G~vv~Ry~ptt~p~~~~~dIe~lL  169 (171)
T KOG1651|consen   90 LNFVKVRYGAEFPIFQKIDVNGDNADPLYKFLKKVKGGPLGDDIKWNFTKFLVDKDGHVVKRFSPTTSPLDIEKDIEKLL  169 (171)
T ss_pred             HHHHHhccCCCCccEeEEecCCCCCchHHHHHhhcCCCcccccceeeeEEEeECCCCcEEEeeCCCCCccccchhHHHHh
Confidence            7777 57888888873  32    2334443322110 00  22347899999999999999988766655555555555


Q ss_pred             h
Q 028030          213 Q  213 (215)
Q Consensus       213 ~  213 (215)
                      .
T Consensus       170 ~  170 (171)
T KOG1651|consen  170 A  170 (171)
T ss_pred             c
Confidence            3

>COG2077 Tpx Peroxiredoxin [Posttranslational modification, protein turnover, chaperones]

Probab=99.69  E-value=4.9e-16  Score=113.49  Aligned_cols=127  Identities=30%  Similarity=0.423  Sum_probs=113.3

Q ss_pred             cCCCCCCCCCeEEeCCCCCeeecCCcCCCcEEEEEEcCCCChhhHHHHHHHHHHHHHHHHcCcEEEEEeCCCHHHHHHHH
Q 028030           67 KVSKGQAPPSFTLKDQEGRNVSLSKFKGKPVVVYFYPADETPGCTKQACAFRDSYEKFKKAGAEVIGISGDDSSSHKAFA  146 (215)
Q Consensus        67 ~~~~g~~~P~f~l~~~~g~~~~l~~~~gk~~ll~f~~a~~C~~C~~~~~~l~~l~~~~~~~~v~vv~vs~d~~~~~~~~~  146 (215)
                      .+++|+++|+|++.+.|.+.+++.++.||..+|..+|+-..+.|..+.+.+++.+.++.  +..|+.||.|-+...++|+
T Consensus        17 ~~~vGd~ap~ftl~~~dL~~v~l~~~~gk~~vi~v~PSiDT~VC~~qvr~Fn~~aa~~~--~~~Vl~IS~DLPFAq~RfC   94 (158)
T COG2077          17 EPQVGDKAPDFTLVGKDLNDVSLADFAGKKKVISVFPSIDTPVCATQVRKFNEEAAKLG--NTVVLCISMDLPFAQKRFC   94 (158)
T ss_pred             CCccCCcCCceEEEcCcccceeccccCCceEEEEEccCCCCchhhHHHHHHHHHHhccC--CcEEEEEeCCChhHHhhhh
Confidence            46899999999999999999999999999999999999999999999999999988887  5899999999999999999


Q ss_pred             HHcCCC-eEEEEcC-ChhHHHHhCCCccCC---CCCCccEEEEEcCCCcEEEEEe
Q 028030          147 KKYRLP-YTLLSDE-GNKVRKEWGVPADFF---GSLPGRQTYILDKNGVVQLIYN  196 (215)
Q Consensus       147 ~~~~~~-~~~~~d~-~~~~~~~~g~~~~~~---g~~p~~~~~lid~~G~v~~~~~  196 (215)
                      ...|++ ...++|- +..+.++||+.-...   | +-.|++|++|.+|+|.+...
T Consensus        95 ~aeGi~nv~~lSd~r~~~Fge~yGv~I~egpL~g-LlARaV~V~De~g~V~y~el  148 (158)
T COG2077          95 GAEGIENVITLSDFRDRAFGENYGVLINEGPLAG-LLARAVFVLDENGKVTYSEL  148 (158)
T ss_pred             hhcCcccceEhhhhhhhhhhHhhCEEeccccccC-eeeeEEEEEcCCCcEEEEEc
Confidence            999998 7777875 456889999975443   3 55789999999999998754

>PF02630 SCO1-SenC: SCO1/SenC; InterPro: IPR003782 This family is involved in biogenesis of respiratory and photosynthetic systems

Probab=99.68  E-value=5.1e-16  Score=119.72  Aligned_cols=128  Identities=27%  Similarity=0.415  Sum_probs=102.2

Q ss_pred             CCCCCCCeEEeCCCCCeeecCCcCCCcEEEEEEcCCCChhhHHHHHHHHHHHHHHHHc--CcEEEEEeCC----CHHHHH
Q 028030           70 KGQAPPSFTLKDQEGRNVSLSKFKGKPVVVYFYPADETPGCTKQACAFRDSYEKFKKA--GAEVIGISGD----DSSSHK  143 (215)
Q Consensus        70 ~g~~~P~f~l~~~~g~~~~l~~~~gk~~ll~f~~a~~C~~C~~~~~~l~~l~~~~~~~--~v~vv~vs~d----~~~~~~  143 (215)
                      .....|+|++.|.+|+++++++++||++||+|.++.|-..|...+..|+++.++++++  .+++|.||+|    +++.++
T Consensus        28 ~~~~~~~f~L~d~~G~~~~~~~~~Gk~~lv~F~yT~CpdvCp~~l~~l~~~~~~l~~~~~~v~~v~ISvDP~~DTp~~L~  107 (174)
T PF02630_consen   28 NPRIVPDFTLTDQDGKTVTLDDLKGKWVLVFFGYTRCPDVCPTTLANLSQLQKQLGEEGKDVQFVFISVDPERDTPEVLK  107 (174)
T ss_dssp             TSCSSST-EEEETTSSEEEGGGGTTSEEEEEEE-TTSSSHHHHHHHHHHHHHHHHHHTTTTEEEEEEESSTTTC-HHHHH
T ss_pred             CCccCCCcEEEcCCCCEecHHHhCCCeEEEEEEEcCCCccCHHHHHHHHHHHHHhhhccCceEEEEEEeCCCCCCHHHHH
Confidence            4567889999999999999999999999999996666678999999999999999874  6999999985    679999


Q ss_pred             HHHHHcCCCeEEEEc---CChhHHHHhCCCccC---------CCCCCccEEEEEcCCCcEEEEEeC
Q 028030          144 AFAKKYRLPYTLLSD---EGNKVRKEWGVPADF---------FGSLPGRQTYILDKNGVVQLIYNN  197 (215)
Q Consensus       144 ~~~~~~~~~~~~~~d---~~~~~~~~~g~~~~~---------~g~~p~~~~~lid~~G~v~~~~~g  197 (215)
                      +|++.++.+|..+..   +-.++.+.|++....         +...++..++|||++|+|+..+.+
T Consensus       108 ~Y~~~~~~~~~~ltg~~~~i~~l~~~~~v~~~~~~~~~~~~~~~i~Hs~~~~Lidp~G~i~~~y~~  173 (174)
T PF02630_consen  108 KYAKKFGPDFIGLTGSREEIEELAKQFGVYYEKVPEDKPEGDYQIDHSAFIYLIDPDGRIRAIYNL  173 (174)
T ss_dssp             HHHHCHTTTCEEEEEEHHHHHHHHHHCTHCEEEEESSSTTSCEEEEESSEEEEE-TTSEEEEEECS
T ss_pred             HHHHhcCCCcceeEeCHHHHHHHHHHHHhhhcccccccCCCCceEecccEEEEEcCCCcEEEEEcc
Confidence            999999988766542   345678888876321         113466799999999999998865

In yeast the SCO1 protein is specifically required for a post-translational step in the accumulation of subunits 1 and 2 of cytochrome c oxidase (COXI and COX-II) []. It is a mitochondrion-associated cytochrome c oxidase assembly factor. The purple nonsulphur photosynthetic eubacterium Rhodobacter capsulatus is a versatile organism that can obtain cellular energy by several means, including the capture of light energy for photosynthesis as well as the use of light-independent respiration, in which molecular oxygen serves as a terminal electron acceptor. The SenC protein is required for optimal cytochrome c oxidase activity in aerobically grown R. capsulatus cells and is involved in the induction of structural polypeptides of the light-harvesting and reaction centre complexes [].; PDB: 2K6V_A 3ME8_A 3ME7_A 2GT6_A 2GQL_A 2GQK_A 2GGT_B 1WP0_C 2HRN_A 2GQM_A ....

>TIGR02738 TrbB type-F conjugative transfer system pilin assembly thiol-disulfide isomerase TrbB

Probab=99.67  E-value=4.9e-16  Score=117.02  Aligned_cols=93  Identities=18%  Similarity=0.280  Sum_probs=68.6

Q ss_pred             CCeeecCCcCCCcEEEEEEcCCCChhhHHHHHHHHHHHHHHHHcCcEEEEEeCCCHHHHHHHHHHcCCCeEEEEcCChhH
Q 028030           84 GRNVSLSKFKGKPVVVYFYPADETPGCTKQACAFRDSYEKFKKAGAEVIGISGDDSSSHKAFAKKYRLPYTLLSDEGNKV  163 (215)
Q Consensus        84 g~~~~l~~~~gk~~ll~f~~a~~C~~C~~~~~~l~~l~~~~~~~~v~vv~vs~d~~~~~~~~~~~~~~~~~~~~d~~~~~  163 (215)
                      |+.++++    ++.||+|| ++||++|++++|.|+++++++   ++.|++|+.|+...         ..|+...|.....
T Consensus        44 G~~~~l~----~~~lvnFW-AsWCppCr~e~P~L~~l~~~~---~~~Vi~Vs~d~~~~---------~~fp~~~~~~~~~  106 (153)
T TIGR02738        44 GRHANQD----DYALVFFY-QSTCPYCHQFAPVLKRFSQQF---GLPVYAFSLDGQGL---------TGFPDPLPATPEV  106 (153)
T ss_pred             chhhhcC----CCEEEEEE-CCCChhHHHHHHHHHHHHHHc---CCcEEEEEeCCCcc---------cccccccCCchHH
Confidence            6666654    45599999 999999999999999999887   58999999886431         1355555444444


Q ss_pred             H-HHh---CCCccCCCCCCccEEEEEcCCCcEE-EEEeCCCC
Q 028030          164 R-KEW---GVPADFFGSLPGRQTYILDKNGVVQ-LIYNNQFQ  200 (215)
Q Consensus       164 ~-~~~---g~~~~~~g~~p~~~~~lid~~G~v~-~~~~g~~~  200 (215)
                      . ..|   ++..     +|  ++|+||++|+++ ....|..+
T Consensus       107 ~~~~~~~~~v~~-----iP--Tt~LID~~G~~i~~~~~G~~s  141 (153)
T TIGR02738       107 MQTFFPNPRPVV-----TP--ATFLVNVNTRKAYPVLQGAVD  141 (153)
T ss_pred             HHHHhccCCCCC-----CC--eEEEEeCCCCEEEEEeecccC
Confidence            3 445   5654     88  999999998864 46777553

This protein is part of a large group of proteins involved in conjugative transfer of plasmid DNA, specifically the F-type system. This protein has been predicted to contain a thioredoxin fold, contains a conserved pair of cysteines and has been shown to function as a thiol disulfide isomerase by complementation of an Ecoli DsbA defect. The protein is believed to be involved in pilin assembly. The protein is closely related to TraF (TIGR02739) which is somewhat longer, lacks the cysteine motif and is apparently not functional as a disulfide bond isomerase.

>cd02950 TxlA TRX-like protein A (TxlA) family; TxlA was originally isolated from the cyanobacterium Synechococcus

Probab=99.63  E-value=1.1e-15  Score=114.13  Aligned_cols=106  Identities=19%  Similarity=0.247  Sum_probs=81.4

Q ss_pred             EEeCCCCCeeecCCc--CCCcEEEEEEcCCCChhhHHHHHHHHHHHHHHHHcCcEEEEEeCCCHHHHHHHHHHcCCCeEE
Q 028030           78 TLKDQEGRNVSLSKF--KGKPVVVYFYPADETPGCTKQACAFRDSYEKFKKAGAEVIGISGDDSSSHKAFAKKYRLPYTL  155 (215)
Q Consensus        78 ~l~~~~g~~~~l~~~--~gk~~ll~f~~a~~C~~C~~~~~~l~~l~~~~~~~~v~vv~vs~d~~~~~~~~~~~~~~~~~~  155 (215)
                      ++++++++...+.+.  +||++||+|| ++||++|+..+|.|.+++++++++ +.|+.|.+|..+               
T Consensus         2 ~~~~~~~~~~~~~~a~~~gk~vvV~F~-A~WC~~C~~~~p~l~~l~~~~~~~-~~~v~v~vd~~~---------------   64 (142)
T cd02950           2 SLEQLAASSTPPEVALSNGKPTLVEFY-ADWCTVCQEMAPDVAKLKQKYGDQ-VNFVMLNVDNPK---------------   64 (142)
T ss_pred             ChHHHhhccCCHHHHHhCCCEEEEEEE-CCcCHHHHHhHHHHHHHHHHhccC-eeEEEEEcCCcc---------------
Confidence            345556666666554  6899999999 999999999999999999998764 889999887532               


Q ss_pred             EEcCChhHHHHhCCCccCCCCCCccEEEEEcCCCcEEEEEeCCCCCCccHHHHHHHH
Q 028030          156 LSDEGNKVRKEWGVPADFFGSLPGRQTYILDKNGVVQLIYNNQFQPEKHIDETLKFL  212 (215)
Q Consensus       156 ~~d~~~~~~~~~g~~~~~~g~~p~~~~~lid~~G~v~~~~~g~~~~~~~~~~il~~l  212 (215)
                          ..++...|++..     +|  +++++|++|+++..+.|... .+.+.++++.+
T Consensus        65 ----~~~~~~~~~V~~-----iP--t~v~~~~~G~~v~~~~G~~~-~~~l~~~l~~l  109 (142)
T cd02950          65 ----WLPEIDRYRVDG-----IP--HFVFLDREGNEEGQSIGLQP-KQVLAQNLDAL  109 (142)
T ss_pred             ----cHHHHHHcCCCC-----CC--EEEEECCCCCEEEEEeCCCC-HHHHHHHHHHH
Confidence                124567889987     99  99999999999999998643 33344454443

It is found only in oxygenic photosynthetic organisms. TRX is a small enzyme that participate in redox reactions, via the reversible oxidation of an active site dithiol present in a CXXC motif. Disruption of the txlA gene suggests that the protein is involved in the redox regulation of the structure and function of photosynthetic apparatus. The plant homolog (designated as HCF164) is localized in the chloroplast and is involved in the assembly of the cytochrome b6f complex, which takes a central position in photosynthetic electron transport.

>COG1999 Uncharacterized protein SCO1/SenC/PrrC, involved in biogenesis of respiratory and photosynthetic systems [General function prediction only]

Probab=99.62  E-value=1.5e-14  Score=114.29  Aligned_cols=138  Identities=23%  Similarity=0.367  Sum_probs=111.2

Q ss_pred             CeEEeCCCCCeeecCCcCCCcEEEEEEcCCCChhhHHHHHHHHHHHHHHH---HcCcEEEEEeCC----CHHHHHHHHH-
Q 028030           76 SFTLKDQEGRNVSLSKFKGKPVVVYFYPADETPGCTKQACAFRDSYEKFK---KAGAEVIGISGD----DSSSHKAFAK-  147 (215)
Q Consensus        76 ~f~l~~~~g~~~~l~~~~gk~~ll~f~~a~~C~~C~~~~~~l~~l~~~~~---~~~v~vv~vs~d----~~~~~~~~~~-  147 (215)
                      +|+++|.+|+.+++.+++||++||+|.++.|...|..++..|.++.+++.   ..+++++.|++|    +++.+++|.+ 
T Consensus        49 ~f~l~d~~G~~~~~~~l~Gk~~lv~FgyT~CpdVCP~~l~~l~~~~~~l~~~~~~~v~vv~itvDPerDtp~~lk~Y~~~  128 (207)
T COG1999          49 DFELTDQDGKPFTLKDLKGKPSLVFFGYTHCPDVCPTTLAELKALLKKLGEGEGDDVQVVFITVDPERDTPEVLKKYAEL  128 (207)
T ss_pred             ceeeecCCCCEeeccccCCCEEEEEeecCCCCccChHHHHHHHHHHHHhccccCCCEEEEEEEECCCCCCHHHHHHHhcc
Confidence            89999999999999999999999999977777789999999999999988   346889999975    6788889988 


Q ss_pred             HcCCCeEEEEc---CChhHHHHhCCCc--------cCCCCCCccEEEEEcCCCcEEEEEeCCCCCCccHHHHHHHHh
Q 028030          148 KYRLPYTLLSD---EGNKVRKEWGVPA--------DFFGSLPGRQTYILDKNGVVQLIYNNQFQPEKHIDETLKFLQ  213 (215)
Q Consensus       148 ~~~~~~~~~~d---~~~~~~~~~g~~~--------~~~g~~p~~~~~lid~~G~v~~~~~g~~~~~~~~~~il~~l~  213 (215)
                      .+...|..+..   ...+++++|++..        ..+...++..+++||++|++...+.+...++..++++.+.++
T Consensus       129 ~~~~~~~~ltg~~~~~~~~~k~~~V~~~~v~~~~~~~y~~~Hs~~~~lid~~G~~~~~~~~~~~~~~i~~~l~~l~~  205 (207)
T COG1999         129 NFDPRWIGLTGTPEQIEEVAKAYGVFYSKVPLDDSQNYTIDHSAGFYLIDADGRFLGTYDYGEPPEEIAADLKKLLK  205 (207)
T ss_pred             cCCCCeeeeeCCHHHHHHHHHHhcceeeecccCCCCCceeeeeeEEEEECCCCeEEEEecCCCChHHHHHHHHHHhh
Confidence            55555776654   3457888998874        134556777899999999999998876665565566555554

>cd02985 TRX_CDSP32 TRX family, chloroplastic drought-induced stress protein of 32 kD (CDSP32); CDSP32 is composed of two TRX domains, a C-terminal TRX domain which contains a redox active CXXC motif and an N-terminal TRX-like domain which contains an SXXS sequence instead of the redox active motif

Probab=99.52  E-value=1e-13  Score=97.81  Aligned_cols=78  Identities=15%  Similarity=0.130  Sum_probs=64.2

Q ss_pred             cCCCcEEEEEEcCCCChhhHHHHHHHHHHHHHHHHcCcEEEEEeCCCHHHHHHHHHHcCCCeEEEEcCChhHHHHhCCCc
Q 028030           92 FKGKPVVVYFYPADETPGCTKQACAFRDSYEKFKKAGAEVIGISGDDSSSHKAFAKKYRLPYTLLSDEGNKVRKEWGVPA  171 (215)
Q Consensus        92 ~~gk~~ll~f~~a~~C~~C~~~~~~l~~l~~~~~~~~v~vv~vs~d~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~g~~~  171 (215)
                      .+||++||+|| ++||++|+..+|.|.++++++  .++.++.|+.|.....                  ..+.+.|++..
T Consensus        13 ~~~k~vvv~F~-a~wC~~C~~~~p~l~~la~~~--~~v~~~~vd~d~~~~~------------------~~l~~~~~V~~   71 (103)
T cd02985          13 AKGRLVVLEFA-LKHSGPSVKIYPTMVKLSRTC--NDVVFLLVNGDENDST------------------MELCRREKIIE   71 (103)
T ss_pred             cCCCEEEEEEE-CCCCHhHHHHhHHHHHHHHHC--CCCEEEEEECCCChHH------------------HHHHHHcCCCc
Confidence            46899999999 999999999999999999998  3689999988764332                  25667788887


Q ss_pred             cCCCCCCccEEEEEcCCCcEEEEEeCC
Q 028030          172 DFFGSLPGRQTYILDKNGVVQLIYNNQ  198 (215)
Q Consensus       172 ~~~g~~p~~~~~lid~~G~v~~~~~g~  198 (215)
                           +|  +++ +.++|+++..+.|.
T Consensus        72 -----~P--t~~-~~~~G~~v~~~~G~   90 (103)
T cd02985          72 -----VP--HFL-FYKDGEKIHEEEGI   90 (103)
T ss_pred             -----CC--EEE-EEeCCeEEEEEeCC
Confidence                 99  644 44899999999884

CDSP32 is a stress-inducible TRX, i.e., it acts as a TRX by reducing protein disulfides and is induced by environmental and oxidative stress conditions. It plays a critical role in plastid defense against oxidative damage, a role related to its function as a physiological electron donor to BAS1, a plastidic 2-cys peroxiredoxin. Plants lacking CDSP32 exhibit decreased photosystem II photochemical efficiencies and chlorophyll retention compared to WT controls, as well as an increased proportion of BAS1 in its overoxidized monomeric form.

>KOG2501 consensus Thioredoxin, nucleoredoxin and related proteins [General function prediction only]

Probab=99.51  E-value=1.1e-13  Score=102.80  Aligned_cols=110  Identities=27%  Similarity=0.388  Sum_probs=94.6

Q ss_pred             eEEeCCCCCeeecC-CcCCCcEEEEEEcCCCChhhHHHHHHHHHHHHHHHHc--CcEEEEEeCCC-HHHHHHHHHHcCCC
Q 028030           77 FTLKDQEGRNVSLS-KFKGKPVVVYFYPADETPGCTKQACAFRDSYEKFKKA--GAEVIGISGDD-SSSHKAFAKKYRLP  152 (215)
Q Consensus        77 f~l~~~~g~~~~l~-~~~gk~~ll~f~~a~~C~~C~~~~~~l~~l~~~~~~~--~v~vv~vs~d~-~~~~~~~~~~~~~~  152 (215)
                      ..+...+|..+..+ .++||++.++|- |.||++|+...|.|.+.|++.++.  .++||.||.|. .+++..|+++++.+
T Consensus        15 ~~l~~~~~~~~~~~~~l~gKvV~lyFs-A~wC~pCR~FTP~Lk~fYe~l~~~~~~fEVvfVS~D~~~~~~~~y~~~~~~~   93 (157)
T KOG2501|consen   15 NRLRKQDGTEVLASEALQGKVVGLYFS-AHWCPPCRDFTPILKDFYEELKDNAAPFEVVFVSSDRDEESLDEYMLEHHGD   93 (157)
T ss_pred             CeeeccCCccchHhHhhCCcEEEEEEE-EEECCchhhCCchHHHHHHHHHhcCCceEEEEEecCCCHHHHHHHHHhcCCC
Confidence            55677888887776 469999999999 999999999999999999999975  49999999975 57899999999999


Q ss_pred             eEEEE---cCChhHHHHhCCCccCCCCCCccEEEEEcCCCcEEEE
Q 028030          153 YTLLS---DEGNKVRKEWGVPADFFGSLPGRQTYILDKNGVVQLI  194 (215)
Q Consensus       153 ~~~~~---d~~~~~~~~~g~~~~~~g~~p~~~~~lid~~G~v~~~  194 (215)
                      |..+.   +...++...|++..     +|  ...+++++|.++..
T Consensus        94 W~~iPf~d~~~~~l~~ky~v~~-----iP--~l~i~~~dG~~v~~  131 (157)
T KOG2501|consen   94 WLAIPFGDDLIQKLSEKYEVKG-----IP--ALVILKPDGTVVTE  131 (157)
T ss_pred             eEEecCCCHHHHHHHHhcccCc-----Cc--eeEEecCCCCEehH
Confidence            87764   23567889999997     99  99999999988754

>TIGR02740 TraF-like TraF-like protein

Probab=99.47  E-value=8.9e-14  Score=114.23  Aligned_cols=105  Identities=15%  Similarity=0.316  Sum_probs=80.2

Q ss_pred             CCeeecCCcCCCcEEEEEEcCCCChhhHHHHHHHHHHHHHHHHcCcEEEEEeCCCHHHHHHHHHHcCCCeEEEEcCChhH
Q 028030           84 GRNVSLSKFKGKPVVVYFYPADETPGCTKQACAFRDSYEKFKKAGAEVIGISGDDSSSHKAFAKKYRLPYTLLSDEGNKV  163 (215)
Q Consensus        84 g~~~~l~~~~gk~~ll~f~~a~~C~~C~~~~~~l~~l~~~~~~~~v~vv~vs~d~~~~~~~~~~~~~~~~~~~~d~~~~~  163 (215)
                      .+...+++++|+++||+|| ++||++|+.++|.|++++++|   |+.|++|++|....         ..|+.+ +.+..+
T Consensus       156 ~~~~~l~~l~~k~~Lv~F~-AswCp~C~~~~P~L~~la~~y---g~~Vi~VsvD~~~~---------~~fp~~-~~d~~l  221 (271)
T TIGR02740       156 QKDRVMKDLAKKSGLFFFF-KSDCPYCHQQAPILQAFEDRY---GIEVLPVSVDGGPL---------PGFPNA-RPDAGQ  221 (271)
T ss_pred             HHHHHHHHhcCCeEEEEEE-CCCCccHHHHhHHHHHHHHHc---CcEEEEEeCCCCcc---------ccCCcc-cCCHHH
Confidence            3446788899999999999 999999999999999998887   48999999986532         125554 345668


Q ss_pred             HHHhCCCccCCCCCCccEEEEEcCC-CcEEEEEeCCCCCCccHHHHH
Q 028030          164 RKEWGVPADFFGSLPGRQTYILDKN-GVVQLIYNNQFQPEKHIDETL  209 (215)
Q Consensus       164 ~~~~g~~~~~~g~~p~~~~~lid~~-G~v~~~~~g~~~~~~~~~~il  209 (215)
                      ...||+..     +|  ++||+|++ |+|.....|....+...+.++
T Consensus       222 a~~~gV~~-----vP--tl~Lv~~~~~~v~~v~~G~~s~~eL~~~i~  261 (271)
T TIGR02740       222 AQQLKIRT-----VP--AVFLADPDPNQFTPIGFGVMSADELVDRIL  261 (271)
T ss_pred             HHHcCCCc-----CC--eEEEEECCCCEEEEEEeCCCCHHHHHHHHH
Confidence            89999987     89  99999995 566556667554444444443

This protein is related to the F-type conjugation system pilus assembly proteins TraF (TIGR02739)and TrbB (TIGR02738) both of which exhibit a thioredoxin fold. The protein represented by this model has the same length and architecture as TraF, but lacks the CXXC-motif found in TrbB and believed to be responsible for the disulfide isomerase activity of that protein.

>KOG0910 consensus Thioredoxin-like protein [Posttranslational modification, protein turnover, chaperones]

Probab=99.46  E-value=3.5e-13  Score=99.22  Aligned_cols=85  Identities=16%  Similarity=0.302  Sum_probs=70.3

Q ss_pred             CCCcEEEEEEcCCCChhhHHHHHHHHHHHHHHHHcCcEEEEEeCCCHHHHHHHHHHcCCCeEEEEcCChhHHHHhCCCcc
Q 028030           93 KGKPVVVYFYPADETPGCTKQACAFRDSYEKFKKAGAEVIGISGDDSSSHKAFAKKYRLPYTLLSDEGNKVRKEWGVPAD  172 (215)
Q Consensus        93 ~gk~~ll~f~~a~~C~~C~~~~~~l~~l~~~~~~~~v~vv~vs~d~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~g~~~~  172 (215)
                      .+++|||+|| |.||++|+...|.|+++..+|.++ +++.-|++                     |+..+++..|++.. 
T Consensus        60 S~~PVlVdF~-A~WCgPCk~l~P~l~~~~~~~~g~-~k~~kvdt---------------------D~~~ela~~Y~I~a-  115 (150)
T KOG0910|consen   60 SDVPVLVDFH-AEWCGPCKMLGPILEELVSEYAGK-FKLYKVDT---------------------DEHPELAEDYEISA-  115 (150)
T ss_pred             cCCCEEEEEe-cCcCccHhHhhHHHHHHHHhhcCe-EEEEEEcc---------------------ccccchHhhcceee-
Confidence            3689999999 999999999999999999999765 88888875                     66678999999998 


Q ss_pred             CCCCCCccEEEEEcCCCcEEEEEeCCCCCCccHHHHH
Q 028030          173 FFGSLPGRQTYILDKNGVVQLIYNNQFQPEKHIDETL  209 (215)
Q Consensus       173 ~~g~~p~~~~~lid~~G~v~~~~~g~~~~~~~~~~il  209 (215)
                          +|  +++++ ++|+.+..+.|..+.+. +.+.+
T Consensus       116 ----vP--tvlvf-knGe~~d~~vG~~~~~~-l~~~i  144 (150)
T KOG0910|consen  116 ----VP--TVLVF-KNGEKVDRFVGAVPKEQ-LRSLI  144 (150)
T ss_pred             ----ee--EEEEE-ECCEEeeeecccCCHHH-HHHHH
Confidence                99  67766 79999999999765433 33333

>KOG0541 consensus Alkyl hydroperoxide reductase/peroxiredoxin [Posttranslational modification, protein turnover, chaperones]

Probab=99.44  E-value=1.6e-12  Score=95.44  Aligned_cols=148  Identities=24%  Similarity=0.411  Sum_probs=114.8

Q ss_pred             ccccCCCCCCCCC--eE-EeCC----CCCeeecCCc-CCCcEEEEEEcCCCChhh-HHHHHHHHHHHHHHHHcCcEEE-E
Q 028030           64 ISAKVSKGQAPPS--FT-LKDQ----EGRNVSLSKF-KGKPVVVYFYPADETPGC-TKQACAFRDSYEKFKKAGAEVI-G  133 (215)
Q Consensus        64 ~~~~~~~g~~~P~--f~-l~~~----~g~~~~l~~~-~gk~~ll~f~~a~~C~~C-~~~~~~l~~l~~~~~~~~v~vv-~  133 (215)
                      ....+.+|+.+|+  ++ +.+.    .+.+++++++ +||.++|+=.|+.+.|.| +.++|.+.+-.++++.+|++.| .
T Consensus         5 ~~a~i~vGd~~p~~~is~~~~~~~~~~~~tv~~~~l~~GKKvIifGvPgAFtPtCs~~HvPGyi~~a~elksKGVd~iic   84 (171)
T KOG0541|consen    5 VMAPIAVGDTLPSGTISLFEDEPEQLQGNTVNVSSLFKGKKVILFGVPGAFTPTCSSSHVPGYIEKADELKSKGVDEIIC   84 (171)
T ss_pred             ccccccccCccccccchhhccCccccccceEEhHHhcCCceEEEEcCCCccCCccccccCchHHHHHHHHHhcCCcEEEE
Confidence            3467889999999  44 2222    2337899987 999999999999999995 6999999999999999998755 5


Q ss_pred             EeCCCHHHHHHHHHHcCCC--eEEEEcCChhHHHHhCCCccCC---CCCCccEEEEEcCCCcEEEEEeCCCCCC---ccH
Q 028030          134 ISGDDSSSHKAFAKKYRLP--YTLLSDEGNKVRKEWGVPADFF---GSLPGRQTYILDKNGVVQLIYNNQFQPE---KHI  205 (215)
Q Consensus       134 vs~d~~~~~~~~~~~~~~~--~~~~~d~~~~~~~~~g~~~~~~---g~~p~~~~~lid~~G~v~~~~~g~~~~~---~~~  205 (215)
                      |++||+..++.|.+.++.+  ..++.|.++++.+.+|+..+..   +...++++-++-.||+|..........+   ...
T Consensus        85 vSVnDpFv~~aW~k~~g~~~~V~f~aD~~g~ftk~lgleld~~d~~~g~RS~R~a~vvengkV~~~nvE~~g~~~t~ssa  164 (171)
T KOG0541|consen   85 VSVNDPFVMKAWAKSLGANDHVKFVADPAGEFTKSLGLELDLSDKLLGVRSRRYALVVENGKVTVVNVEEGGTDFTVSSA  164 (171)
T ss_pred             EecCcHHHHHHHHhhcCccceEEEEecCCCceeeeccceeeeccccCccccccEEEEEeCCeEEEEEeccCCCceEEecH
Confidence            8999999999999999986  7889999999999999986532   2355667777778999998865432221   334


Q ss_pred             HHHHHH
Q 028030          206 DETLKF  211 (215)
Q Consensus       206 ~~il~~  211 (215)
                      +.+++.
T Consensus       165 ~~il~~  170 (171)
T KOG0541|consen  165 EDILKQ  170 (171)
T ss_pred             HHHhhc
Confidence            555543

>cd02999 PDI_a_ERp44_like PDIa family, endoplasmic reticulum protein 44 (ERp44)-like subfamily; composed of uncharacterized PDI-like eukaryotic proteins containing only one redox active TRX (a) domain with a CXXS motif, similar to ERp44

Probab=99.44  E-value=1.2e-12  Score=91.78  Aligned_cols=77  Identities=17%  Similarity=0.236  Sum_probs=63.0

Q ss_pred             CCcCCCcEEEEEEcCCCChhhHHHHHHHHHHHHHHHHcCcEEEEEeCCCHHHHHHHHHHcCCCeEEEEcCChhHHHHhCC
Q 028030           90 SKFKGKPVVVYFYPADETPGCTKQACAFRDSYEKFKKAGAEVIGISGDDSSSHKAFAKKYRLPYTLLSDEGNKVRKEWGV  169 (215)
Q Consensus        90 ~~~~gk~~ll~f~~a~~C~~C~~~~~~l~~l~~~~~~~~v~vv~vs~d~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~g~  169 (215)
                      ++++||++||+|| ++||++|+..+|.+.+++++++  ++.++.|..++                    ....+.+.|++
T Consensus        14 ~~~~g~~vlV~F~-a~WC~~C~~~~p~l~~la~~~~--~~~~~~vd~~~--------------------~~~~l~~~~~V   70 (100)
T cd02999          14 AFNREDYTAVLFY-ASWCPFSASFRPHFNALSSMFP--QIRHLAIEESS--------------------IKPSLLSRYGV   70 (100)
T ss_pred             HhcCCCEEEEEEE-CCCCHHHHhHhHHHHHHHHHhc--cCceEEEECCC--------------------CCHHHHHhcCC
Confidence            4568999999999 9999999999999999999986  47888875431                    34478889999


Q ss_pred             CccCCCCCCccEEEEEcCCCcEEEEEeCC
Q 028030          170 PADFFGSLPGRQTYILDKNGVVQLIYNNQ  198 (215)
Q Consensus       170 ~~~~~g~~p~~~~~lid~~G~v~~~~~g~  198 (215)
                      ..     +|  ++++++ +| .+..+.|.
T Consensus        71 ~~-----~P--T~~lf~-~g-~~~~~~G~   90 (100)
T cd02999          71 VG-----FP--TILLFN-ST-PRVRYNGT   90 (100)
T ss_pred             ee-----cC--EEEEEc-CC-ceeEecCC
Confidence            87     99  888896 55 56677775

CXXS is still a redox active motif; however, the mixed disulfide formed with the substrate is more stable than those formed by CXXC motif proteins. PDI-related proteins are usually involved in the oxidative protein folding in the ER by acting as catalysts and folding assistants. ERp44 is involved in thiol-mediated retention in the ER.

>cd02963 TRX_DnaJ TRX domain, DnaJ domain containing protein family; composed of uncharacterized proteins of about 500-800 amino acids, containing an N-terminal DnaJ domain followed by one redox active TRX domain

Probab=99.42  E-value=3.8e-12  Score=90.97  Aligned_cols=88  Identities=14%  Similarity=0.315  Sum_probs=70.4

Q ss_pred             cCCCcEEEEEEcCCCChhhHHHHHHHHHHHHHHHHcCcEEEEEeCCCHHHHHHHHHHcCCCeEEEEcCChhHHHHhCCCc
Q 028030           92 FKGKPVVVYFYPADETPGCTKQACAFRDSYEKFKKAGAEVIGISGDDSSSHKAFAKKYRLPYTLLSDEGNKVRKEWGVPA  171 (215)
Q Consensus        92 ~~gk~~ll~f~~a~~C~~C~~~~~~l~~l~~~~~~~~v~vv~vs~d~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~g~~~  171 (215)
                      ..|+++||+|| ++||++|+...|.+.++.+++++.++.++.|+.|                     .+..+...|++..
T Consensus        22 ~~~~~vlV~F~-a~wC~~C~~~~p~~~~l~~~~~~~~v~~~~vd~d---------------------~~~~l~~~~~V~~   79 (111)
T cd02963          22 SFKKPYLIKIT-SDWCFSCIHIEPVWKEVIQELEPLGVGIATVNAG---------------------HERRLARKLGAHS   79 (111)
T ss_pred             cCCCeEEEEEE-CCccHhHHHhhHHHHHHHHHHHhcCceEEEEecc---------------------ccHHHHHHcCCcc
Confidence            36899999999 9999999999999999999998767888888764                     3456788899987


Q ss_pred             cCCCCCCccEEEEEcCCCcEEEEEeCCCCCCccHHHHHHHHh
Q 028030          172 DFFGSLPGRQTYILDKNGVVQLIYNNQFQPEKHIDETLKFLQ  213 (215)
Q Consensus       172 ~~~g~~p~~~~~lid~~G~v~~~~~g~~~~~~~~~~il~~l~  213 (215)
                           +|  +++++ ++|+++....|..+    .+++.+.|+
T Consensus        80 -----~P--t~~i~-~~g~~~~~~~G~~~----~~~l~~~i~  109 (111)
T cd02963          80 -----VP--AIVGI-INGQVTFYHDSSFT----KQHVVDFVR  109 (111)
T ss_pred             -----CC--EEEEE-ECCEEEEEecCCCC----HHHHHHHHh
Confidence                 99  88888 59999888888432    344555544

DnaJ is a member of the 40 kDa heat-shock protein (Hsp40) family of molecular chaperones, which regulate the activity of Hsp70s. TRX is involved in the redox regulation of many protein substrates through the reduction of disulfide bonds. TRX has been implicated to catalyse the reduction of Hsp33, a chaperone holdase that binds to unfolded protein intermediates. The presence of DnaJ and TRX domains in members of this family suggests that they could be involved in a redox-regulated chaperone network.

>cd02951 SoxW SoxW family; SoxW is a bacterial periplasmic TRX, containing a redox active CXXC motif, encoded by a genetic locus (sox operon) involved in thiosulfate oxidation

Probab=99.42  E-value=9.5e-13  Score=95.95  Aligned_cols=102  Identities=17%  Similarity=0.227  Sum_probs=75.3

Q ss_pred             CC-CcEEEEEEcCCCChhhHHHHHHHH---HHHHHHHHcCcEEEEEeCCCHHHHHHHHHHcCCCeEEEEcCChhHHHHhC
Q 028030           93 KG-KPVVVYFYPADETPGCTKQACAFR---DSYEKFKKAGAEVIGISGDDSSSHKAFAKKYRLPYTLLSDEGNKVRKEWG  168 (215)
Q Consensus        93 ~g-k~~ll~f~~a~~C~~C~~~~~~l~---~l~~~~~~~~v~vv~vs~d~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~g  168 (215)
                      .| |+++|+|| ++||++|+...+.+.   ++.+.+.+ ++.++.|+.|+...+..|        ........++...|+
T Consensus        12 ~~~k~vlv~f~-a~wC~~C~~~~~~~~~~~~~~~~~~~-~~~~~~i~~d~~~~~~~~--------~~~~~~~~~l~~~~~   81 (125)
T cd02951          12 DGKKPLLLLFS-QPGCPYCDKLKRDYLNDPAVQAYIRA-HFVVVYINIDGDKEVTDF--------DGEALSEKELARKYR   81 (125)
T ss_pred             cCCCcEEEEEe-CCCCHHHHHHHHHhcCcHHHHHHHHh-heEEEEEEccCCceeecc--------CCCCccHHHHHHHcC
Confidence            57 89999999 999999999999885   56666654 688999988765432221        111234578899999


Q ss_pred             CCccCCCCCCccEEEEEcCC-CcEEEEEeCCCCCCccHHHHHHHH
Q 028030          169 VPADFFGSLPGRQTYILDKN-GVVQLIYNNQFQPEKHIDETLKFL  212 (215)
Q Consensus       169 ~~~~~~g~~p~~~~~lid~~-G~v~~~~~g~~~~~~~~~~il~~l  212 (215)
                      +..     +|  +++++|++ |+++....|... .+.+.++++.+
T Consensus        82 v~~-----~P--t~~~~~~~gg~~~~~~~G~~~-~~~~~~~l~~~  118 (125)
T cd02951          82 VRF-----TP--TVIFLDPEGGKEIARLPGYLP-PDEFLAYLEYV  118 (125)
T ss_pred             Ccc-----cc--EEEEEcCCCCceeEEecCCCC-HHHHHHHHHHH
Confidence            987     89  99999999 899999988543 34455555543

Sulfur bacteria oxidize sulfur compounds to provide reducing equivalents for carbon dioxide fixation during autotrophic growth and the respiratory electron transport chain. It is unclear what the role of SoxW is, since it has been found to be dispensable in the oxidation of thiosulfate to sulfate. SoxW is specifically kept in the reduced state by SoxV, which is essential in thiosulfate oxidation.

>KOG2792 consensus Putative cytochrome C oxidase assembly protein [Energy production and conversion]

Probab=99.40  E-value=1.3e-12  Score=103.43  Aligned_cols=139  Identities=19%  Similarity=0.283  Sum_probs=107.8

Q ss_pred             CCeEEeCCCCCeeecCCcCCCcEEEEEEcCCCChhhHHHHHHHHHHHHHHHHc-CcE--EEEEeCC----CHHHHHHHHH
Q 028030           75 PSFTLKDQEGRNVSLSKFKGKPVVVYFYPADETPGCTKQACAFRDSYEKFKKA-GAE--VIGISGD----DSSSHKAFAK  147 (215)
Q Consensus        75 P~f~l~~~~g~~~~l~~~~gk~~ll~f~~a~~C~~C~~~~~~l~~l~~~~~~~-~v~--vv~vs~d----~~~~~~~~~~  147 (215)
                      -+|+|.|.+|+.++-.|++|||+||+|-++.|...|..++..|.+..++..++ |+.  -|+|++|    +.+.+++|++
T Consensus       120 GpF~L~d~~Gk~~te~df~Gkw~LiYFGFThCPDICPdELeKm~~~Vd~i~~~~~~~~~PlFIsvDPeRD~~~~~~eY~~  199 (280)
T KOG2792|consen  120 GPFSLVDHDGKRVTEKDFLGKWSLIYFGFTHCPDICPDELEKMSAVVDEIEAKPGLPPVPLFISVDPERDSVEVVAEYVS  199 (280)
T ss_pred             CceEEEecCCCeecccccccceEEEEecccCCCCcChHHHHHHHHHHHHHhccCCCCccceEEEeCcccCCHHHHHHHHH
Confidence            48999999999999999999999999996666667999999999999998865 443  4566764    6799999999


Q ss_pred             HcCCCeEEEE---cCChhHHHHhCCCccC--------CCCCCccEEEEEcCCCcEEEEEeCCCCCCccHHHHHHHHh
Q 028030          148 KYRLPYTLLS---DEGNKVRKEWGVPADF--------FGSLPGRQTYILDKNGVVQLIYNNQFQPEKHIDETLKFLQ  213 (215)
Q Consensus       148 ~~~~~~~~~~---d~~~~~~~~~g~~~~~--------~g~~p~~~~~lid~~G~v~~~~~g~~~~~~~~~~il~~l~  213 (215)
                      ++.....-+.   ++-.++++.|-|+...        +=+.++-.+|||||+|+.+..+.-..+.++..+.|++.+.
T Consensus       200 eF~pkllGLTGT~eqvk~vak~yRVYfs~gp~d~~~DYlVDHSi~mYLidPeg~Fvd~~GrN~~~~~~~~~I~~~v~  276 (280)
T KOG2792|consen  200 EFHPKLLGLTGTTEQVKQVAKKYRVYFSTGPKDEDQDYLVDHSIFMYLIDPEGEFVDYYGRNYDADELADSILKHVA  276 (280)
T ss_pred             hcChhhhcccCCHHHHHHHHHHhEEeeccCCCCCCCCeeeeeeEEEEEECCCcceehhhcccCCHHHHHHHHHHHHH
Confidence            9987755443   4456788888876421        2233455789999999999888666666666666666554

>cd02948 TRX_NDPK TRX domain, TRX and NDP-kinase (NDPK) fusion protein family; most members of this group are fusion proteins which contain one redox active TRX domain containing a CXXC motif and three NDPK domains, and are characterized as intermediate chains (ICs) of axonemal outer arm dynein

Probab=99.40  E-value=4.2e-12  Score=89.37  Aligned_cols=85  Identities=14%  Similarity=0.122  Sum_probs=66.2

Q ss_pred             CCCcEEEEEEcCCCChhhHHHHHHHHHHHHHHHHcCcEEEEEeCCCHHHHHHHHHHcCCCeEEEEcCChhHHHHhCCCcc
Q 028030           93 KGKPVVVYFYPADETPGCTKQACAFRDSYEKFKKAGAEVIGISGDDSSSHKAFAKKYRLPYTLLSDEGNKVRKEWGVPAD  172 (215)
Q Consensus        93 ~gk~~ll~f~~a~~C~~C~~~~~~l~~l~~~~~~~~v~vv~vs~d~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~g~~~~  172 (215)
                      .|++++|+|| ++||++|+...|.|.++++++++..+.++.+..|.                      .++.++|++.. 
T Consensus        16 ~~~~vvv~F~-a~wC~~Ck~~~p~l~~~~~~~~~~~~~~~~vd~d~----------------------~~~~~~~~v~~-   71 (102)
T cd02948          16 NKGLTVVDVY-QEWCGPCKAVVSLFKKIKNELGDDLLHFATAEADT----------------------IDTLKRYRGKC-   71 (102)
T ss_pred             cCCeEEEEEE-CCcCHhHHHHhHHHHHHHHHcCCCcEEEEEEeCCC----------------------HHHHHHcCCCc-
Confidence            4789999999 99999999999999999999886557788887652                      24568889987 


Q ss_pred             CCCCCCccEEEEEcCCCcEEEEEeCCCCCCccHHHHHHHHh
Q 028030          173 FFGSLPGRQTYILDKNGVVQLIYNNQFQPEKHIDETLKFLQ  213 (215)
Q Consensus       173 ~~g~~p~~~~~lid~~G~v~~~~~g~~~~~~~~~~il~~l~  213 (215)
                          +|  +++++ ++|+++.+..|. .    .+++++.|+
T Consensus        72 ----~P--t~~~~-~~g~~~~~~~G~-~----~~~~~~~i~  100 (102)
T cd02948          72 ----EP--TFLFY-KNGELVAVIRGA-N----APLLNKTIT  100 (102)
T ss_pred             ----Cc--EEEEE-ECCEEEEEEecC-C----hHHHHHHHh
Confidence                89  55544 799999988883 2    244555554

Dyneins are molecular motors that generate force against microtubules to produce cellular movement, and are divided into two classes: axonemal and cytoplasmic. They are supramolecular complexes consisting of three protein groups classified according to size: dynein heavy, intermediate and light chains. Axonemal dyneins form two structures, the inner and outer arms, which are attached to doublet microtubules throughout the cilia and flagella. The human homolog is the sperm-specific Sptrx-2, presumed to be a component of the human sperm axoneme architecture. Included in this group is another human protein, TRX-like protein 2, a smaller fusion protein containing one TRX and one NDPK domain, which

>cd02954 DIM1 Dim1 family; Dim1 is also referred to as U5 small nuclear ribonucleoprotein particle (snRNP)-specific 15kD protein

Probab=99.39  E-value=3.5e-12  Score=90.96  Aligned_cols=78  Identities=18%  Similarity=0.102  Sum_probs=65.2

Q ss_pred             CCCcEEEEEEcCCCChhhHHHHHHHHHHHHHHHHcCcEEEEEeCCCHHHHHHHHHHcCCCeEEEEcCChhHHHHhCCCcc
Q 028030           93 KGKPVVVYFYPADETPGCTKQACAFRDSYEKFKKAGAEVIGISGDDSSSHKAFAKKYRLPYTLLSDEGNKVRKEWGVPAD  172 (215)
Q Consensus        93 ~gk~~ll~f~~a~~C~~C~~~~~~l~~l~~~~~~~~v~vv~vs~d~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~g~~~~  172 (215)
                      .++++||+|| ++||++|+...|.|.++++++++. +.++-|.+                     |+..++...|++.. 
T Consensus        13 ~~~~vVV~F~-A~WCgpCk~m~P~le~la~~~~~~-v~f~kVDv---------------------D~~~~la~~~~V~~-   68 (114)
T cd02954          13 EEKVVVIRFG-RDWDPVCMQMDEVLAKIAEDVSNF-AVIYLVDI---------------------DEVPDFNKMYELYD-   68 (114)
T ss_pred             CCCEEEEEEE-CCCChhHHHHHHHHHHHHHHccCc-eEEEEEEC---------------------CCCHHHHHHcCCCC-
Confidence            3678999999 999999999999999999999754 67787875                     55668889999998 


Q ss_pred             CCCCCCccEEEEEcCCCcEEEEEeCCCCC
Q 028030          173 FFGSLPGRQTYILDKNGVVQLIYNNQFQP  201 (215)
Q Consensus       173 ~~g~~p~~~~~lid~~G~v~~~~~g~~~~  201 (215)
                          +|  +++++ ++|+++....|..+.
T Consensus        69 ----iP--Tf~~f-k~G~~v~~~~G~~~~   90 (114)
T cd02954          69 ----PP--TVMFF-FRNKHMKIDLGTGNN   90 (114)
T ss_pred             ----CC--EEEEE-ECCEEEEEEcCCCCC
Confidence                99  66666 799999998885543

It is a component of U5 snRNP, which pre-assembles with U4/U6 snRNPs to form a [U4/U6:U5] tri-snRNP complex required for pre-mRNA splicing. Dim1 interacts with multiple splicing-associated proteins, suggesting that it functions at multiple control points in the splicing of pre-mRNA as part of a large spliceosomal complex involving many protein-protein interactions. U5 snRNP contains seven core proteins (common to all snRNPs) and nine U5-specific proteins, one of which is Dim1. Dim1 adopts a thioredoxin fold but does not contain the redox active CXXC motif. It is essential for G2/M phase transition, as a consequence to its role in pre-mRNA splicing.

>PF00255 GSHPx: Glutathione peroxidase; InterPro: IPR000889 Glutathione peroxidase (GSHPx) (1

Probab=99.38  E-value=2.3e-12  Score=91.01  Aligned_cols=81  Identities=28%  Similarity=0.505  Sum_probs=73.0

Q ss_pred             CCeEEeCCCCCeeecCCcCCCcEEEEEEcCCCChhhHHHHHHHHHHHHHHHHcCcEEEEEeCC--------CHHHHHHHH
Q 028030           75 PSFTLKDQEGRNVSLSKFKGKPVVVYFYPADETPGCTKQACAFRDSYEKFKKAGAEVIGISGD--------DSSSHKAFA  146 (215)
Q Consensus        75 P~f~l~~~~g~~~~l~~~~gk~~ll~f~~a~~C~~C~~~~~~l~~l~~~~~~~~v~vv~vs~d--------~~~~~~~~~  146 (215)
                      .+|++.|.+|+.++|++++||++||+.. |+-|+.-. ++..|++|+++|+++|++|+++..+        +.+++++++
T Consensus         2 Ydf~~~~~~G~~v~l~~y~Gkv~LIVNv-As~Cg~t~-qy~~L~~L~~ky~~~gl~ILaFPcnqFg~QEp~~~~ei~~~~   79 (108)
T PF00255_consen    2 YDFSAKDIDGKPVSLSKYKGKVLLIVNV-ASKCGYTK-QYKQLNELYEKYKDKGLEILAFPCNQFGNQEPGSNEEIKEFC   79 (108)
T ss_dssp             GGSEEEBTTSSEEEGGGGTTSEEEEEEE-ESSSTTHH-HHHHHHHHHHHHGGGTEEEEEEEBSTTTTTTSSCHHHHHHHH
T ss_pred             cceeeeCCCCCEECHHHcCCCEEEEEec-ccccCCcc-ccHHHHHHHHHHhcCCeEEEeeehHHhccccCCCHHHHHHHH
Confidence            4799999999999999999999999999 99999888 9999999999999999999999753        568899999


Q ss_pred             HH-cCCCeEEEE
Q 028030          147 KK-YRLPYTLLS  157 (215)
Q Consensus       147 ~~-~~~~~~~~~  157 (215)
                      .. ++.+|+++.
T Consensus        80 ~~~~~~~F~vf~   91 (108)
T PF00255_consen   80 KEKFGVTFPVFE   91 (108)
T ss_dssp             CHCHT-SSEEBS
T ss_pred             HhccCCcccceE
Confidence            76 789999874

11.1.9 from EC) is an enzyme that catalyses the reduction of hydroxyperoxides by glutathione [, ]. Its main function is to protect against the damaging effect of endogenously formed hydroxyperoxides. In higher vertebrates, several forms of GSHPx are known, including a ubiquitous cytosolic form (GSHPx-1), a gastrointestinal cytosolic form (GSHPx-GI), a plasma secreted form (GSHPx-P), and an epididymal secretory form (GSHPx-EP). In addition to these characterised forms, the sequence of a protein of unknown function [] has been shown to be evolutionary related to those of GSHPx's. In filarial nematode parasites, the major soluble cuticular protein (gp29) is a secreted GSHPx, which may provide a mechanism of resistance to the immune reaction of the mammalian host by neutralising the products of the oxidative burst of leukocytes []. The Escherichia coli protein btuE, a periplasmic protein involved in vitamin B12 transport, is evolutionarily related to GSHPxs, although the significance of this relationship is unclear. The structure of bovine seleno-glutathione peroxidase has been determined []. The protein belongs to the alpha-beta class, with a 3 layer(aba) sandwich architecture. The catalyic site of GSHPx contains a conserved residue which is either a cysteine or, in many eukaryotic GSHPx, a selenocysteine []. ; GO: 0004602 glutathione peroxidase activity, 0006979 response to oxidative stress, 0055114 oxidation-reduction process; PDB: 3E0U_A 2VUP_A 2RM5_A 2RM6_A 3DWV_B 2P31_B 2R37_B 1GP1_B 2F8A_B 3KIJ_C ....

>cd02956 ybbN ybbN protein family; ybbN is a hypothetical protein containing a redox-inactive TRX-like domain

Probab=99.38  E-value=8.4e-12  Score=86.53  Aligned_cols=75  Identities=21%  Similarity=0.361  Sum_probs=63.5

Q ss_pred             CCCcEEEEEEcCCCChhhHHHHHHHHHHHHHHHHcCcEEEEEeCCCHHHHHHHHHHcCCCeEEEEcCChhHHHHhCCCcc
Q 028030           93 KGKPVVVYFYPADETPGCTKQACAFRDSYEKFKKAGAEVIGISGDDSSSHKAFAKKYRLPYTLLSDEGNKVRKEWGVPAD  172 (215)
Q Consensus        93 ~gk~~ll~f~~a~~C~~C~~~~~~l~~l~~~~~~~~v~vv~vs~d~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~g~~~~  172 (215)
                      +|+++||+|| ++||++|+...+.+.++++++.+ .+.++.|+.|                     ....+.+.|++.. 
T Consensus        11 ~~~~vlv~f~-a~wC~~C~~~~~~~~~~~~~~~~-~~~~~~vd~~---------------------~~~~l~~~~~i~~-   66 (96)
T cd02956          11 TQVPVVVDFW-APRSPPSKELLPLLERLAEEYQG-QFVLAKVNCD---------------------AQPQIAQQFGVQA-   66 (96)
T ss_pred             CCCeEEEEEE-CCCChHHHHHHHHHHHHHHHhCC-cEEEEEEecc---------------------CCHHHHHHcCCCC-
Confidence            4789999999 99999999999999999998875 3777778754                     4457888899987 


Q ss_pred             CCCCCCccEEEEEcCCCcEEEEEeCC
Q 028030          173 FFGSLPGRQTYILDKNGVVQLIYNNQ  198 (215)
Q Consensus       173 ~~g~~p~~~~~lid~~G~v~~~~~g~  198 (215)
                          +|  ++++++ +|+++..+.|.
T Consensus        67 ----~P--t~~~~~-~g~~~~~~~g~   85 (96)
T cd02956          67 ----LP--TVYLFA-AGQPVDGFQGA   85 (96)
T ss_pred             ----CC--EEEEEe-CCEEeeeecCC
Confidence                89  888886 99998888884

Its gene has been sequenced from several gammaproteobacteria and actinobacteria.

>cd02953 DsbDgamma DsbD gamma family; DsbD gamma is the C-terminal periplasmic domain of the bacterial protein DsbD

Probab=99.33  E-value=7e-12  Score=88.37  Aligned_cols=90  Identities=23%  Similarity=0.252  Sum_probs=67.9

Q ss_pred             CCCcEEEEEEcCCCChhhHHHHHHH---HHHHHHHHHcCcEEEEEeCCCHHHHHHHHHHcCCCeEEEEcCChhHHHHhCC
Q 028030           93 KGKPVVVYFYPADETPGCTKQACAF---RDSYEKFKKAGAEVIGISGDDSSSHKAFAKKYRLPYTLLSDEGNKVRKEWGV  169 (215)
Q Consensus        93 ~gk~~ll~f~~a~~C~~C~~~~~~l---~~l~~~~~~~~v~vv~vs~d~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~g~  169 (215)
                      .||++||+|| ++||++|+...+.+   .++.+.+++ ++.++.|..+..+.                 ....+.+.|++
T Consensus        10 ~~k~vlv~f~-a~wC~~C~~~~~~~~~~~~~~~~~~~-~~~~~~vd~~~~~~-----------------~~~~~~~~~~i   70 (104)
T cd02953          10 QGKPVFVDFT-ADWCVTCKVNEKVVFSDPEVQAALKK-DVVLLRADWTKNDP-----------------EITALLKRFGV   70 (104)
T ss_pred             cCCeEEEEEE-cchhHHHHHHHHHhcCCHHHHHHHhC-CeEEEEEecCCCCH-----------------HHHHHHHHcCC
Confidence            5799999999 99999999998877   577777765 68888888753211                 12356677888


Q ss_pred             CccCCCCCCccEEEEEcC-CCcEEEEEeCCCCCCccHHHHHHHH
Q 028030          170 PADFFGSLPGRQTYILDK-NGVVQLIYNNQFQPEKHIDETLKFL  212 (215)
Q Consensus       170 ~~~~~g~~p~~~~~lid~-~G~v~~~~~g~~~~~~~~~~il~~l  212 (215)
                      ..     +|  +++++++ +|++...+.|..+    .+++.+.|
T Consensus        71 ~~-----~P--ti~~~~~~~g~~~~~~~G~~~----~~~l~~~l  103 (104)
T cd02953          71 FG-----PP--TYLFYGPGGEPEPLRLPGFLT----ADEFLEAL  103 (104)
T ss_pred             CC-----CC--EEEEECCCCCCCCcccccccC----HHHHHHHh
Confidence            87     89  9999998 9999988888542    34455444

It contains a CXXC motif in a TRX fold and shuttles the reducing potential from the membrane domain (DsbD beta) to the N-terminal periplasmic domain (DsbD alpha). DsbD beta, a transmembrane domain comprising of eight helices, acquires its reducing potential from the cytoplasmic thioredoxin. DsbD alpha transfers the acquired reducing potential from DsbD gamma to target proteins such as the periplasmic protein disulphide isomerases, DsbC and DsbG. This flow of reducing potential from the cytoplasm through DsbD allows DsbC and DsbG to act as isomerases in the oxidizing environment of the bacterial periplasm. DsbD also transfers reducing potential from the cytoplasm to specific reductases in the periplasm which are involved in the maturation of cytochromes.

>COG0678 AHP1 Peroxiredoxin [Posttranslational modification, protein turnover, chaperones]

Probab=99.32  E-value=3.6e-11  Score=87.94  Aligned_cols=144  Identities=24%  Similarity=0.369  Sum_probs=109.7

Q ss_pred             CCCCCCCCCeEEeCC------CC-CeeecCCc-CCCcEEEEEEcCCCChhhH-HHHHHHHHHHHHHHHcCcEE-EEEeCC
Q 028030           68 VSKGQAPPSFTLKDQ------EG-RNVSLSKF-KGKPVVVYFYPADETPGCT-KQACAFRDSYEKFKKAGAEV-IGISGD  137 (215)
Q Consensus        68 ~~~g~~~P~f~l~~~------~g-~~~~l~~~-~gk~~ll~f~~a~~C~~C~-~~~~~l~~l~~~~~~~~v~v-v~vs~d  137 (215)
                      +.+|+++|..++...      +| +.++..++ +||.++|+=.|+.+.|.|. .++|...+++++++++|+.= +.|++|
T Consensus         3 ~~vg~klP~vtf~tr~~~~~~~~~~~~ts~~lf~gKkVvlf~lPGAFTPTCS~~hlPgY~~~~d~f~~kGVD~I~cVSVN   82 (165)
T COG0678           3 IMVGKKLPAVTFKTRVGDETADGWVDVTTDDLFKGKKVVLFSLPGAFTPTCSSSHLPGYLELADEFKAKGVDEIYCVSVN   82 (165)
T ss_pred             cccCCcCCceEeEEeeccccCCCcccccHHHhcCCCEEEEEeCCCccCCCcccccCccHHHHHHHHHHcCCceEEEEEeC
Confidence            578999999888754      22 44555665 8999999999999999997 49999999999999999874 458999


Q ss_pred             CHHHHHHHHHHcCCC--eEEEEcCChhHHHHhCCCccCC--C-CCCccEEEEEcCCCcEEEEEeCCCCC---CccHHHHH
Q 028030          138 DSSSHKAFAKKYRLP--YTLLSDEGNKVRKEWGVPADFF--G-SLPGRQTYILDKNGVVQLIYNNQFQP---EKHIDETL  209 (215)
Q Consensus       138 ~~~~~~~~~~~~~~~--~~~~~d~~~~~~~~~g~~~~~~--g-~~p~~~~~lid~~G~v~~~~~g~~~~---~~~~~~il  209 (215)
                      |...+.+|.+..+..  ..++.|.++++.+.+|+..+..  | .+.+-++-.+-+||+|...+.-+...   -...+.+|
T Consensus        83 D~FVm~AWak~~g~~~~I~fi~Dg~geFTk~~Gm~~d~~~~g~G~RS~RYsmvV~nGvV~~~~iE~p~~~~~vS~a~~mL  162 (165)
T COG0678          83 DAFVMNAWAKSQGGEGNIKFIPDGNGEFTKAMGMLVDKSDLGFGVRSWRYSMVVENGVVEKLFIEPPGDPFTVSSADTML  162 (165)
T ss_pred             cHHHHHHHHHhcCCCccEEEecCCCchhhhhcCceeecccCCcceeeeeEEEEEeCCeEEEEEecCCCCceeecCHHHHH
Confidence            999999999988876  8889999999999999975421  1 23333444444799999887543211   13445555


Q ss_pred             HH
Q 028030          210 KF  211 (215)
Q Consensus       210 ~~  211 (215)
                      +.
T Consensus       163 ~~  164 (165)
T COG0678         163 AQ  164 (165)
T ss_pred             hc
Confidence            43

>PRK09381 trxA thioredoxin; Provisional

Probab=99.28  E-value=3.7e-11  Score=85.33  Aligned_cols=77  Identities=17%  Similarity=0.305  Sum_probs=63.7

Q ss_pred             CCCcEEEEEEcCCCChhhHHHHHHHHHHHHHHHHcCcEEEEEeCCCHHHHHHHHHHcCCCeEEEEcCChhHHHHhCCCcc
Q 028030           93 KGKPVVVYFYPADETPGCTKQACAFRDSYEKFKKAGAEVIGISGDDSSSHKAFAKKYRLPYTLLSDEGNKVRKEWGVPAD  172 (215)
Q Consensus        93 ~gk~~ll~f~~a~~C~~C~~~~~~l~~l~~~~~~~~v~vv~vs~d~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~g~~~~  172 (215)
                      .+++++|+|| ++||++|+...|.++++++++.+ ++.++.|..|.                     ...+...|++.. 
T Consensus        20 ~~~~vvv~f~-~~~C~~C~~~~p~~~~l~~~~~~-~~~~~~vd~~~---------------------~~~~~~~~~v~~-   75 (109)
T PRK09381         20 ADGAILVDFW-AEWCGPCKMIAPILDEIADEYQG-KLTVAKLNIDQ---------------------NPGTAPKYGIRG-   75 (109)
T ss_pred             CCCeEEEEEE-CCCCHHHHHHhHHHHHHHHHhCC-CcEEEEEECCC---------------------ChhHHHhCCCCc-
Confidence            3689999999 99999999999999999999986 48888887643                     334667888887 


Q ss_pred             CCCCCCccEEEEEcCCCcEEEEEeCCCC
Q 028030          173 FFGSLPGRQTYILDKNGVVQLIYNNQFQ  200 (215)
Q Consensus       173 ~~g~~p~~~~~lid~~G~v~~~~~g~~~  200 (215)
                          +|  +++++ ++|+++..+.|...
T Consensus        76 ----~P--t~~~~-~~G~~~~~~~G~~~   96 (109)
T PRK09381         76 ----IP--TLLLF-KNGEVAATKVGALS   96 (109)
T ss_pred             ----CC--EEEEE-eCCeEEEEecCCCC
Confidence                89  77777 69999999888643

>cd02994 PDI_a_TMX PDIa family, TMX subfamily; composed of proteins similar to the TRX-related human transmembrane protein, TMX

Probab=99.26  E-value=8.2e-11  Score=82.34  Aligned_cols=85  Identities=21%  Similarity=0.375  Sum_probs=63.9

Q ss_pred             CCCcEEEEEEcCCCChhhHHHHHHHHHHHHHHHHcCcEEEEEeCCCHHHHHHHHHHcCCCeEEEEcCChhHHHHhCCCcc
Q 028030           93 KGKPVVVYFYPADETPGCTKQACAFRDSYEKFKKAGAEVIGISGDDSSSHKAFAKKYRLPYTLLSDEGNKVRKEWGVPAD  172 (215)
Q Consensus        93 ~gk~~ll~f~~a~~C~~C~~~~~~l~~l~~~~~~~~v~vv~vs~d~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~g~~~~  172 (215)
                      +|+ +||.|| ++||++|+...|.+.+++++++..++.+..|..+                     .+..+...|++.. 
T Consensus        16 ~~~-~lv~f~-a~wC~~C~~~~p~~~~l~~~~~~~~v~~~~vd~~---------------------~~~~~~~~~~i~~-   71 (101)
T cd02994          16 EGE-WMIEFY-APWCPACQQLQPEWEEFADWSDDLGINVAKVDVT---------------------QEPGLSGRFFVTA-   71 (101)
T ss_pred             CCC-EEEEEE-CCCCHHHHHHhHHHHHHHHhhccCCeEEEEEEcc---------------------CCHhHHHHcCCcc-
Confidence            566 689999 9999999999999999998876556777777643                     3345778889987 


Q ss_pred             CCCCCCccEEEEEcCCCcEEEEEeCCCCCCccHHHHHHHHh
Q 028030          173 FFGSLPGRQTYILDKNGVVQLIYNNQFQPEKHIDETLKFLQ  213 (215)
Q Consensus       173 ~~g~~p~~~~~lid~~G~v~~~~~g~~~~~~~~~~il~~l~  213 (215)
                          +|  +++++ ++|++ ..+.|..    ..+++.+.++
T Consensus        72 ----~P--t~~~~-~~g~~-~~~~G~~----~~~~l~~~i~  100 (101)
T cd02994          72 ----LP--TIYHA-KDGVF-RRYQGPR----DKEDLISFIE  100 (101)
T ss_pred             ----cC--EEEEe-CCCCE-EEecCCC----CHHHHHHHHh
Confidence                99  77665 89986 5677743    3455666554

TMX is a type I integral membrane protein; the N-terminal redox active TRX domain is present in the endoplasmic reticulum (ER) lumen while the C-terminus is oriented towards the cytoplasm. It is expressed in many cell types and its active site motif (CPAC) is unique. In vitro, TMX reduces interchain disulfides of insulin and renatures inactive RNase containing incorrect disulfide bonds. The C. elegans homolog, DPY-11, is expressed only in the hypodermis and resides in the cytoplasm. It is required for body and sensory organ morphogeneis. Another uncharacterized TRX-related transmembrane protein, human TMX4, is included in the alignment. The active site sequence of TMX4 is CPSC.

>PF13098 Thioredoxin_2: Thioredoxin-like domain; PDB: 1T3B_A 2L57_A 1EEJ_B 1TJD_A 1JZD_B 1JZO_A 1G0T_B 3GV1_A 1V58_A 2H0H_A

Probab=99.25  E-value=3.6e-12  Score=90.88  Aligned_cols=96  Identities=24%  Similarity=0.293  Sum_probs=67.6

Q ss_pred             CCCcEEEEEEcCCCChhhHHHHHHHHHHHH---HHHHcCcEEEEEeCCCHH-HHHHHHHHcCCCeEEEEcCChhHHHHhC
Q 028030           93 KGKPVVVYFYPADETPGCTKQACAFRDSYE---KFKKAGAEVIGISGDDSS-SHKAFAKKYRLPYTLLSDEGNKVRKEWG  168 (215)
Q Consensus        93 ~gk~~ll~f~~a~~C~~C~~~~~~l~~l~~---~~~~~~v~vv~vs~d~~~-~~~~~~~~~~~~~~~~~d~~~~~~~~~g  168 (215)
                      .||++||+|| ..||++|++..+.+.++.+   .++ .++.++.+..++.+ ....+++..+.+...  ....++...||
T Consensus         4 ~~k~~v~~F~-~~~C~~C~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~l~~~~~   79 (112)
T PF13098_consen    4 NGKPIVVVFT-DPWCPYCKKLEKELFPDNDVARYLK-DDFQVIFVNIDDSRDESEAVLDFDGQKNVR--LSNKELAQRYG   79 (112)
T ss_dssp             TSSEEEEEEE--TT-HHHHHHHHHHHHHHHHHCEEH-CECEEEECESHSHHHHHHHHHSHTCHSSCH--HHHHHHHHHTT
T ss_pred             CCCEEEEEEE-CCCCHHHHHHHHHHHHHHHHHHHhh-cCeEEEEEecCCcccccccccccccchhhh--HHHHHHHHHcC
Confidence            5799999999 9999999988888876533   222 35889999987664 344555544432111  22357999999


Q ss_pred             CCccCCCCCCccEEEEEcCCCcEEEEEeCCC
Q 028030          169 VPADFFGSLPGRQTYILDKNGVVQLIYNNQF  199 (215)
Q Consensus       169 ~~~~~~g~~p~~~~~lid~~G~v~~~~~g~~  199 (215)
                      +.+     .|  +++++|++|+++....|..
T Consensus        80 v~g-----tP--t~~~~d~~G~~v~~~~G~~  103 (112)
T PF13098_consen   80 VNG-----TP--TIVFLDKDGKIVYRIPGYL  103 (112)
T ss_dssp             --S-----SS--EEEECTTTSCEEEEEESS-
T ss_pred             CCc-----cC--EEEEEcCCCCEEEEecCCC
Confidence            998     88  9999999999999888854

...

>cd03002 PDI_a_MPD1_like PDI family, MPD1-like subfamily; composed of eukaryotic proteins similar to Saccharomyces cerevisiae MPD1 protein, which contains a single redox active TRX domain located at the N-terminus, and an ER retention signal at the C-terminus indicative of an ER-resident protein

Probab=99.23  E-value=9.3e-11  Score=83.05  Aligned_cols=88  Identities=15%  Similarity=0.288  Sum_probs=68.0

Q ss_pred             CCCcEEEEEEcCCCChhhHHHHHHHHHHHHHHHHcCcEEEEEeCCCHHHHHHHHHHcCCCeEEEEcCChhHHHHhCCCcc
Q 028030           93 KGKPVVVYFYPADETPGCTKQACAFRDSYEKFKKAGAEVIGISGDDSSSHKAFAKKYRLPYTLLSDEGNKVRKEWGVPAD  172 (215)
Q Consensus        93 ~gk~~ll~f~~a~~C~~C~~~~~~l~~l~~~~~~~~v~vv~vs~d~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~g~~~~  172 (215)
                      .|+++||.|| ++||++|+...|.+.++++++.+ .+.++.|+.|..                   ++.++...|++.. 
T Consensus        17 ~~~~~lv~f~-a~wC~~C~~~~~~~~~~a~~~~~-~~~~~~v~~~~~-------------------~~~~~~~~~~i~~-   74 (109)
T cd03002          17 TNYTTLVEFY-APWCGHCKNLKPEYAKAAKELDG-LVQVAAVDCDED-------------------KNKPLCGKYGVQG-   74 (109)
T ss_pred             CCCeEEEEEE-CCCCHHHHhhChHHHHHHHHhcC-CceEEEEecCcc-------------------ccHHHHHHcCCCc-
Confidence            4788999999 99999999999999999998875 488888887642                   2457788899987 


Q ss_pred             CCCCCCccEEEEEcCCCc----EEEEEeCCCCCCccHHHHHHHH
Q 028030          173 FFGSLPGRQTYILDKNGV----VQLIYNNQFQPEKHIDETLKFL  212 (215)
Q Consensus       173 ~~g~~p~~~~~lid~~G~----v~~~~~g~~~~~~~~~~il~~l  212 (215)
                          +|  +++++++++.    +...+.|.    ...+++.+.|
T Consensus        75 ----~P--t~~~~~~~~~~~~~~~~~~~G~----~~~~~l~~fi  108 (109)
T cd03002          75 ----FP--TLKVFRPPKKASKHAVEDYNGE----RSAKAIVDFV  108 (109)
T ss_pred             ----CC--EEEEEeCCCcccccccccccCc----cCHHHHHHHh
Confidence                89  9999987773    44455553    3455666554

MPD1 has been shown to suppress the maturation defect of carboxypeptidase Y caused by deletion of the yeast PDI1 gene. Other characterized members of this subfamily include the Aspergillus niger prpA protein and Giardia PDI-1. PrpA is non-essential to strain viability, however, its transcript level is induced by heterologous protein expression suggesting a possible role in oxidative protein folding during high protein production. Giardia PDI-1 has the ability to refold scrambled RNase and exhibits transglutaminase activity.

>cd03003 PDI_a_ERdj5_N PDIa family, N-terminal ERdj5 subfamily; ERdj5, also known as JPDI and macrothioredoxin, is a protein containing an N-terminal DnaJ domain and four redox active TRX domains

Probab=99.23  E-value=2.5e-11  Score=85.06  Aligned_cols=76  Identities=17%  Similarity=0.335  Sum_probs=62.1

Q ss_pred             CCCcEEEEEEcCCCChhhHHHHHHHHHHHHHHHHcCcEEEEEeCCCHHHHHHHHHHcCCCeEEEEcCChhHHHHhCCCcc
Q 028030           93 KGKPVVVYFYPADETPGCTKQACAFRDSYEKFKKAGAEVIGISGDDSSSHKAFAKKYRLPYTLLSDEGNKVRKEWGVPAD  172 (215)
Q Consensus        93 ~gk~~ll~f~~a~~C~~C~~~~~~l~~l~~~~~~~~v~vv~vs~d~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~g~~~~  172 (215)
                      .+++++|.|| ++||++|+...|.+.++++++++. +.+..|+.|                     ....+.+.|++.. 
T Consensus        17 ~~~~~~v~f~-a~wC~~C~~~~p~~~~~a~~~~~~-~~~~~vd~~---------------------~~~~~~~~~~v~~-   72 (101)
T cd03003          17 SGEIWFVNFY-SPRCSHCHDLAPTWREFAKEMDGV-IRIGAVNCG---------------------DDRMLCRSQGVNS-   72 (101)
T ss_pred             CCCeEEEEEE-CCCChHHHHhHHHHHHHHHHhcCc-eEEEEEeCC---------------------ccHHHHHHcCCCc-
Confidence            4689999999 999999999999999999999854 788888764                     3346777888887 


Q ss_pred             CCCCCCccEEEEEcCCCcEEEEEeCCC
Q 028030          173 FFGSLPGRQTYILDKNGVVQLIYNNQF  199 (215)
Q Consensus       173 ~~g~~p~~~~~lid~~G~v~~~~~g~~  199 (215)
                          +|  +++++ ++|+....+.|..
T Consensus        73 ----~P--t~~~~-~~g~~~~~~~G~~   92 (101)
T cd03003          73 ----YP--SLYVF-PSGMNPEKYYGDR   92 (101)
T ss_pred             ----cC--EEEEE-cCCCCcccCCCCC
Confidence                89  77666 7898877777743

This subfamily is comprised of the first TRX domain of ERdj5 located after the DnaJ domain at the N-terminal half of the protein. ERdj5 is a ubiquitous protein localized in the endoplasmic reticulum (ER) and is abundant in secretory cells. It's transcription is induced during ER stress. It interacts with BiP through its DnaJ domain in an ATP-dependent manner. BiP, an ER-resident member of the Hsp70 chaperone family, functions in ER-associated degradation and protein translocation.

>PHA02278 thioredoxin-like protein

Probab=99.23  E-value=6e-11  Score=83.57  Aligned_cols=80  Identities=19%  Similarity=0.200  Sum_probs=62.8

Q ss_pred             CCCcEEEEEEcCCCChhhHHHHHHHHHHHHHHHHcCcEEEEEeCCCHHHHHHHHHHcCCCeEEEEcCChhHHHHhCCCcc
Q 028030           93 KGKPVVVYFYPADETPGCTKQACAFRDSYEKFKKAGAEVIGISGDDSSSHKAFAKKYRLPYTLLSDEGNKVRKEWGVPAD  172 (215)
Q Consensus        93 ~gk~~ll~f~~a~~C~~C~~~~~~l~~l~~~~~~~~v~vv~vs~d~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~g~~~~  172 (215)
                      +++++||+|| |+||++|+...|.|.++.+++.. .+.++-|.+|..+.                | ..++.+.|++.. 
T Consensus        13 ~~~~vvV~F~-A~WCgpCk~m~p~l~~l~~~~~~-~~~~~~vdvd~~~~----------------d-~~~l~~~~~I~~-   72 (103)
T PHA02278         13 QKKDVIVMIT-QDNCGKCEILKSVIPMFQESGDI-KKPILTLNLDAEDV----------------D-REKAVKLFDIMS-   72 (103)
T ss_pred             CCCcEEEEEE-CCCCHHHHhHHHHHHHHHhhhcC-CceEEEEECCcccc----------------c-cHHHHHHCCCcc-
Confidence            5789999999 99999999999999999877543 36777777654321                1 246888999997 


Q ss_pred             CCCCCCccEEEEEcCCCcEEEEEeCCC
Q 028030          173 FFGSLPGRQTYILDKNGVVQLIYNNQF  199 (215)
Q Consensus       173 ~~g~~p~~~~~lid~~G~v~~~~~g~~  199 (215)
                          +|  +++++ ++|+.+.+..|..
T Consensus        73 ----iP--T~i~f-k~G~~v~~~~G~~   92 (103)
T PHA02278         73 ----TP--VLIGY-KDGQLVKKYEDQV   92 (103)
T ss_pred             ----cc--EEEEE-ECCEEEEEEeCCC
Confidence                99  56555 7999999998853

>cd02993 PDI_a_APS_reductase PDIa family, 5'-Adenylylsulfate (APS) reductase subfamily; composed of plant-type APS reductases containing a C-terminal redox active TRX domain and an N-terminal reductase domain which is part of a superfamily that includes N type ATP PPases

Probab=99.22  E-value=1.7e-10  Score=82.07  Aligned_cols=88  Identities=20%  Similarity=0.388  Sum_probs=67.1

Q ss_pred             CCCcEEEEEEcCCCChhhHHHHHHHHHHHHHHHHcCcEEEEEeCCCHHHHHHHHHHcCCCeEEEEcCChhHHH-HhCCCc
Q 028030           93 KGKPVVVYFYPADETPGCTKQACAFRDSYEKFKKAGAEVIGISGDDSSSHKAFAKKYRLPYTLLSDEGNKVRK-EWGVPA  171 (215)
Q Consensus        93 ~gk~~ll~f~~a~~C~~C~~~~~~l~~l~~~~~~~~v~vv~vs~d~~~~~~~~~~~~~~~~~~~~d~~~~~~~-~~g~~~  171 (215)
                      +||+++|.|| ++||++|+...|.+.++++++++.++.+..|..|..                    +..+.. .|++..
T Consensus        20 ~~k~vlv~f~-a~wC~~C~~~~~~~~~la~~~~~~~~~~~~vd~d~~--------------------~~~~~~~~~~v~~   78 (109)
T cd02993          20 RNQSTLVVLY-APWCPFCQAMEASYEELAEKLAGSNVKVAKFNADGE--------------------QREFAKEELQLKS   78 (109)
T ss_pred             cCCCEEEEEE-CCCCHHHHHHhHHHHHHHHHhccCCeEEEEEECCcc--------------------chhhHHhhcCCCc
Confidence            4799999999 999999999999999999999876788888876541                    123333 478876


Q ss_pred             cCCCCCCccEEEEEcCCCcEEEEEeCCCCCCccHHHHHHH
Q 028030          172 DFFGSLPGRQTYILDKNGVVQLIYNNQFQPEKHIDETLKF  211 (215)
Q Consensus       172 ~~~g~~p~~~~~lid~~G~v~~~~~g~~~~~~~~~~il~~  211 (215)
                           +|  ++++++++++....+.|..   .+.+++++.
T Consensus        79 -----~P--ti~~f~~~~~~~~~y~g~~---~~~~~l~~f  108 (109)
T cd02993          79 -----FP--TILFFPKNSRQPIKYPSEQ---RDVDSLLMF  108 (109)
T ss_pred             -----CC--EEEEEcCCCCCceeccCCC---CCHHHHHhh
Confidence                 89  8999988887777777731   344555443

APS reductase catalyzes the reduction of activated sulfate to sulfite, a key step in the biosynthesis of sulfur-containing metabolites. Sulfate is first activated by ATP sulfurylase, forming APS, which can be phosphorylated to 3'-phosphoadenosine-5'-phosphosulfate (PAPS). Depending on the organism, either APS or PAPS can be used for sulfate reduction. Prokaryotes and fungi use PAPS, whereas plants use both APS and PAPS. Since plant-type APS reductase uses glutathione (GSH) as its electron donor, the C-terminal domain may function like glutaredoxin, a GSH-dependent member of the TRX superfamily. The flow of reducing equivalents goes from GSH - C-terminal TRX domain - N-terminal reductase domain - APS. Plant-type APS red

>PRK10996 thioredoxin 2; Provisional

Probab=99.22  E-value=1.3e-10  Score=86.32  Aligned_cols=76  Identities=21%  Similarity=0.350  Sum_probs=63.2

Q ss_pred             CCCcEEEEEEcCCCChhhHHHHHHHHHHHHHHHHcCcEEEEEeCCCHHHHHHHHHHcCCCeEEEEcCChhHHHHhCCCcc
Q 028030           93 KGKPVVVYFYPADETPGCTKQACAFRDSYEKFKKAGAEVIGISGDDSSSHKAFAKKYRLPYTLLSDEGNKVRKEWGVPAD  172 (215)
Q Consensus        93 ~gk~~ll~f~~a~~C~~C~~~~~~l~~l~~~~~~~~v~vv~vs~d~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~g~~~~  172 (215)
                      .+|+++|+|| ++||++|+...+.|.++++++.+ ++.++.|..+                     ...++.+.|++.. 
T Consensus        51 ~~k~vvv~F~-a~wC~~C~~~~~~l~~l~~~~~~-~v~~~~vd~~---------------------~~~~l~~~~~V~~-  106 (139)
T PRK10996         51 DDLPVVIDFW-APWCGPCRNFAPIFEDVAAERSG-KVRFVKVNTE---------------------AERELSARFRIRS-  106 (139)
T ss_pred             CCCeEEEEEE-CCCCHHHHHHHHHHHHHHHHhCC-CeEEEEEeCC---------------------CCHHHHHhcCCCc-
Confidence            4789999999 99999999999999999988775 4888888653                     3457888999987 


Q ss_pred             CCCCCCccEEEEEcCCCcEEEEEeCCC
Q 028030          173 FFGSLPGRQTYILDKNGVVQLIYNNQF  199 (215)
Q Consensus       173 ~~g~~p~~~~~lid~~G~v~~~~~g~~  199 (215)
                          +|  +++++ ++|+++..+.|..
T Consensus       107 ----~P--tlii~-~~G~~v~~~~G~~  126 (139)
T PRK10996        107 ----IP--TIMIF-KNGQVVDMLNGAV  126 (139)
T ss_pred             ----cC--EEEEE-ECCEEEEEEcCCC
Confidence                99  66666 5999999988853

>PLN00410 U5 snRNP protein, DIM1 family; Provisional

Probab=99.21  E-value=1.8e-10  Score=85.23  Aligned_cols=76  Identities=13%  Similarity=0.061  Sum_probs=60.2

Q ss_pred             CCCcEEEEEEcCCCChhhHHHHHHHHHHHHHHHHcCcEEEEEeCCCHHHHHHHHHHcCCCeEEEEcCChhHHHHhCCCcc
Q 028030           93 KGKPVVVYFYPADETPGCTKQACAFRDSYEKFKKAGAEVIGISGDDSSSHKAFAKKYRLPYTLLSDEGNKVRKEWGVPAD  172 (215)
Q Consensus        93 ~gk~~ll~f~~a~~C~~C~~~~~~l~~l~~~~~~~~v~vv~vs~d~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~g~~~~  172 (215)
                      .++++||+|| ++||++|+...|.|.++++++++. +.|+-|.+                     |+..++...|++.. 
T Consensus        22 ~~~lVVvdF~-A~WCgpCk~m~p~l~~la~~~~~~-~~~~kVDV---------------------De~~dla~~y~I~~-   77 (142)
T PLN00410         22 EERLVVIRFG-HDWDETCMQMDEVLASVAETIKNF-AVIYLVDI---------------------TEVPDFNTMYELYD-   77 (142)
T ss_pred             CCCEEEEEEE-CCCChhHHHHHHHHHHHHHHcCCc-eEEEEEEC---------------------CCCHHHHHHcCccC-
Confidence            4689999999 999999999999999999998754 66677775                     55667888899985 


Q ss_pred             CCCCCCccEEEEEcCCCc-EEEEEeCC
Q 028030          173 FFGSLPGRQTYILDKNGV-VQLIYNNQ  198 (215)
Q Consensus       173 ~~g~~p~~~~~lid~~G~-v~~~~~g~  198 (215)
                          .|  .++++=++|+ .+++..|.
T Consensus        78 ----~~--t~~~ffk~g~~~vd~~tG~   98 (142)
T PLN00410         78 ----PC--TVMFFFRNKHIMIDLGTGN   98 (142)
T ss_pred             ----CC--cEEEEEECCeEEEEEeccc
Confidence                55  4554447888 77777773

>KOG0907 consensus Thioredoxin [Posttranslational modification, protein turnover, chaperones]

Probab=99.20  E-value=1.2e-10  Score=82.24  Aligned_cols=73  Identities=29%  Similarity=0.315  Sum_probs=62.4

Q ss_pred             CCcEEEEEEcCCCChhhHHHHHHHHHHHHHHHHcCcEEEEEeCCCHHHHHHHHHHcCCCeEEEEcCChhHHHHhCCCccC
Q 028030           94 GKPVVVYFYPADETPGCTKQACAFRDSYEKFKKAGAEVIGISGDDSSSHKAFAKKYRLPYTLLSDEGNKVRKEWGVPADF  173 (215)
Q Consensus        94 gk~~ll~f~~a~~C~~C~~~~~~l~~l~~~~~~~~v~vv~vs~d~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~g~~~~~  173 (215)
                      +|.++|+|+ ++||++|+...|.+.+|+.+|.+  +.|+.|++|.                     ...+...|++..  
T Consensus        21 ~kliVvdF~-a~wCgPCk~i~P~~~~La~~y~~--v~Flkvdvde---------------------~~~~~~~~~V~~--   74 (106)
T KOG0907|consen   21 DKLVVVDFY-ATWCGPCKAIAPKFEKLAEKYPD--VVFLKVDVDE---------------------LEEVAKEFNVKA--   74 (106)
T ss_pred             CCeEEEEEE-CCCCcchhhhhhHHHHHHHHCCC--CEEEEEeccc---------------------CHhHHHhcCceE--
Confidence            589999999 99999999999999999999995  8999998754                     356777888887  


Q ss_pred             CCCCCccEEEEEcCCCcEEEEEeCC
Q 028030          174 FGSLPGRQTYILDKNGVVQLIYNNQ  198 (215)
Q Consensus       174 ~g~~p~~~~~lid~~G~v~~~~~g~  198 (215)
                         +|  +.+++ ++|+.+..+.|.
T Consensus        75 ---~P--Tf~f~-k~g~~~~~~vGa   93 (106)
T KOG0907|consen   75 ---MP--TFVFY-KGGEEVDEVVGA   93 (106)
T ss_pred             ---ee--EEEEE-ECCEEEEEEecC
Confidence               99  45444 899999999884

>cd03004 PDI_a_ERdj5_C PDIa family, C-terminal ERdj5 subfamily; ERdj5, also known as JPDI and macrothioredoxin, is a protein containing an N-terminal DnaJ domain and four redox active TRX domains

Probab=99.20  E-value=2.1e-10  Score=80.66  Aligned_cols=77  Identities=18%  Similarity=0.219  Sum_probs=63.3

Q ss_pred             CCCcEEEEEEcCCCChhhHHHHHHHHHHHHHHHHcCcEEEEEeCCCHHHHHHHHHHcCCCeEEEEcCChhHHHHhCCCcc
Q 028030           93 KGKPVVVYFYPADETPGCTKQACAFRDSYEKFKKAGAEVIGISGDDSSSHKAFAKKYRLPYTLLSDEGNKVRKEWGVPAD  172 (215)
Q Consensus        93 ~gk~~ll~f~~a~~C~~C~~~~~~l~~l~~~~~~~~v~vv~vs~d~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~g~~~~  172 (215)
                      .+++++|.|| ++||++|+...|.+.++.+++++ ++.+..|+.+                     ...++.+.|++.. 
T Consensus        18 ~~~~v~v~f~-a~wC~~C~~~~p~~~~~~~~~~~-~~~~~~vd~~---------------------~~~~~~~~~~i~~-   73 (104)
T cd03004          18 RKEPWLVDFY-APWCGPCQALLPELRKAARALKG-KVKVGSVDCQ---------------------KYESLCQQANIRA-   73 (104)
T ss_pred             CCCeEEEEEE-CCCCHHHHHHHHHHHHHHHHhcC-CcEEEEEECC---------------------chHHHHHHcCCCc-
Confidence            3679999999 99999999999999999999864 4788888764                     3446778889987 


Q ss_pred             CCCCCCccEEEEEcCCCcEEEEEeCCC
Q 028030          173 FFGSLPGRQTYILDKNGVVQLIYNNQF  199 (215)
Q Consensus       173 ~~g~~p~~~~~lid~~G~v~~~~~g~~  199 (215)
                          +|  ++++++++|+....+.|..
T Consensus        74 ----~P--t~~~~~~g~~~~~~~~G~~   94 (104)
T cd03004          74 ----YP--TIRLYPGNASKYHSYNGWH   94 (104)
T ss_pred             ----cc--EEEEEcCCCCCceEccCCC
Confidence                89  8888876668888888853

This subfamily is composed of the three TRX domains located at the C-terminal half of the protein. ERdj5 is a ubiquitous protein localized in the endoplasmic reticulum (ER) and is abundant in secretory cells. It's transcription is induced during ER stress. It interacts with BiP through its DnaJ domain in an ATP-dependent manner. BiP, an ER-resident member of the Hsp70 chaperone family, functions in ER-associated degradation and protein translocation. Also included in the alignment is the single complete TRX domain of an uncharacterized protein from Tetraodon nigroviridis, which also contains a DnaJ domain at its N-terminus.

>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]

Probab=99.18  E-value=9.7e-11  Score=95.22  Aligned_cols=86  Identities=21%  Similarity=0.374  Sum_probs=71.6

Q ss_pred             CCCcEEEEEEcCCCChhhHHHHHHHHHHHHHHHHcCcEEEEEeCCCHHHHHHHHHHcCCCeEEEEcCChhHHHHhCCCcc
Q 028030           93 KGKPVVVYFYPADETPGCTKQACAFRDSYEKFKKAGAEVIGISGDDSSSHKAFAKKYRLPYTLLSDEGNKVRKEWGVPAD  172 (215)
Q Consensus        93 ~gk~~ll~f~~a~~C~~C~~~~~~l~~l~~~~~~~~v~vv~vs~d~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~g~~~~  172 (215)
                      +-++|||+|| ++||++|+..+|.|.++.++|+++ +.+.-|++                     |.+..++..||++. 
T Consensus        42 ~~~PVlV~fW-ap~~~~c~qL~p~Lekla~~~~G~-f~LakvN~---------------------D~~p~vAaqfgiqs-   97 (304)
T COG3118          42 REVPVLVDFW-APWCGPCKQLTPTLEKLAAEYKGK-FKLAKVNC---------------------DAEPMVAAQFGVQS-   97 (304)
T ss_pred             cCCCeEEEec-CCCCchHHHHHHHHHHHHHHhCCc-eEEEEecC---------------------CcchhHHHHhCcCc-
Confidence            4579999999 999999999999999999999975 88877875                     56678899999998 


Q ss_pred             CCCCCCccEEEEEcCCCcEEEEEeCCCCCCccHHHHHH
Q 028030          173 FFGSLPGRQTYILDKNGVVQLIYNNQFQPEKHIDETLK  210 (215)
Q Consensus       173 ~~g~~p~~~~~lid~~G~v~~~~~g~~~~~~~~~~il~  210 (215)
                          +|  ++|++ ++|+-+..|.|.. +++-+.+.++
T Consensus        98 ----IP--tV~af-~dGqpVdgF~G~q-Pesqlr~~ld  127 (304)
T COG3118          98 ----IP--TVYAF-KDGQPVDGFQGAQ-PESQLRQFLD  127 (304)
T ss_pred             ----CC--eEEEe-eCCcCccccCCCC-cHHHHHHHHH
Confidence                99  88888 8999999999964 3433444443

>cd03005 PDI_a_ERp46 PDIa family, endoplasmic reticulum protein 46 (ERp46) subfamily; ERp46 is an ER-resident protein containing three redox active TRX domains

Probab=99.18  E-value=1.8e-10  Score=80.46  Aligned_cols=75  Identities=17%  Similarity=0.281  Sum_probs=61.0

Q ss_pred             CcEEEEEEcCCCChhhHHHHHHHHHHHHHHHH--cCcEEEEEeCCCHHHHHHHHHHcCCCeEEEEcCChhHHHHhCCCcc
Q 028030           95 KPVVVYFYPADETPGCTKQACAFRDSYEKFKK--AGAEVIGISGDDSSSHKAFAKKYRLPYTLLSDEGNKVRKEWGVPAD  172 (215)
Q Consensus        95 k~~ll~f~~a~~C~~C~~~~~~l~~l~~~~~~--~~v~vv~vs~d~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~g~~~~  172 (215)
                      ++++|+|| ++||++|+...|.+.++++++++  .++.++.|..+                     .+..+.+.|++.. 
T Consensus        17 ~~~lv~f~-a~wC~~C~~~~p~~~~~~~~~~~~~~~~~~~~vd~~---------------------~~~~~~~~~~v~~-   73 (102)
T cd03005          17 GNHFVKFF-APWCGHCKRLAPTWEQLAKKFNNENPSVKIAKVDCT---------------------QHRELCSEFQVRG-   73 (102)
T ss_pred             CCEEEEEE-CCCCHHHHHhCHHHHHHHHHHhccCCcEEEEEEECC---------------------CChhhHhhcCCCc-
Confidence            35999999 99999999999999999999986  24777777643                     3446777888887 


Q ss_pred             CCCCCCccEEEEEcCCCcEEEEEeCCC
Q 028030          173 FFGSLPGRQTYILDKNGVVQLIYNNQF  199 (215)
Q Consensus       173 ~~g~~p~~~~~lid~~G~v~~~~~g~~  199 (215)
                          +|  +++++ ++|+.+..+.|..
T Consensus        74 ----~P--t~~~~-~~g~~~~~~~G~~   93 (102)
T cd03005          74 ----YP--TLLLF-KDGEKVDKYKGTR   93 (102)
T ss_pred             ----CC--EEEEE-eCCCeeeEeeCCC
Confidence                89  88888 6888888888854

Yeast complementation studies show that ERp46 can substitute for protein disulfide isomerase (PDI) function in vivo. It has been detected in many tissues, however, transcript and protein levels do not correlate in all tissues, suggesting regulation at a posttranscriptional level. An identical protein, named endoPDI, has been identified as an endothelial PDI that is highly expressed in the endothelium of tumors and hypoxic lesions. It has a protective effect on cells exposed to hypoxia.

>cd02949 TRX_NTR TRX domain, novel NADPH thioredoxin reductase (NTR) family; composed of fusion proteins found only in oxygenic photosynthetic organisms containing both TRX and NTR domains

Probab=99.17  E-value=4.7e-10  Score=78.03  Aligned_cols=76  Identities=11%  Similarity=0.203  Sum_probs=62.7

Q ss_pred             CCCcEEEEEEcCCCChhhHHHHHHHHHHHHHHHHcCcEEEEEeCCCHHHHHHHHHHcCCCeEEEEcCChhHHHHhCCCcc
Q 028030           93 KGKPVVVYFYPADETPGCTKQACAFRDSYEKFKKAGAEVIGISGDDSSSHKAFAKKYRLPYTLLSDEGNKVRKEWGVPAD  172 (215)
Q Consensus        93 ~gk~~ll~f~~a~~C~~C~~~~~~l~~l~~~~~~~~v~vv~vs~d~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~g~~~~  172 (215)
                      .+|+++|+|| ++||+.|+...+.+.++.+++.+ ++.++.|+.|                     .+.++...+++.. 
T Consensus        12 ~~~~vlv~f~-a~~C~~C~~~~~~l~~l~~~~~~-~v~~~~id~d---------------------~~~~l~~~~~v~~-   67 (97)
T cd02949          12 SDRLILVLYT-SPTCGPCRTLKPILNKVIDEFDG-AVHFVEIDID---------------------EDQEIAEAAGIMG-   67 (97)
T ss_pred             CCCeEEEEEE-CCCChhHHHHHHHHHHHHHHhCC-ceEEEEEECC---------------------CCHHHHHHCCCee-
Confidence            4689999999 99999999999999999988875 4777777754                     3346777888876 


Q ss_pred             CCCCCCccEEEEEcCCCcEEEEEeCCC
Q 028030          173 FFGSLPGRQTYILDKNGVVQLIYNNQF  199 (215)
Q Consensus       173 ~~g~~p~~~~~lid~~G~v~~~~~g~~  199 (215)
                          +|  ++++++ +|+++....|..
T Consensus        68 ----vP--t~~i~~-~g~~v~~~~g~~   87 (97)
T cd02949          68 ----TP--TVQFFK-DKELVKEISGVK   87 (97)
T ss_pred             ----cc--EEEEEE-CCeEEEEEeCCc
Confidence                88  888885 899998888843

The TRX domain functions as a protein disulfide reductase via the reversible oxidation of an active center dithiol present in a CXXC motif, while the NTR domain functions as a reductant to oxidized TRX. The fusion protein is bifunctional, showing both TRX and NTR activities, but it is not an independent NTR/TRX system. In plants, the protein is found exclusively in shoots and mature leaves and is localized in the chloroplast. It is involved in plant protection against oxidative stress.

>cd03000 PDI_a_TMX3 PDIa family, TMX3 subfamily; composed of eukaryotic proteins similar to human TMX3, a TRX related transmembrane protein containing one redox active TRX domain at the N-terminus and a classical ER retrieval sequence for type I transmembrane proteins at the C-terminus

Probab=99.16  E-value=4.7e-10  Score=79.03  Aligned_cols=75  Identities=21%  Similarity=0.326  Sum_probs=57.3

Q ss_pred             CCCcEEEEEEcCCCChhhHHHHHHHHHHHHHHHHcC--cEEEEEeCCCHHHHHHHHHHcCCCeEEEEcCChhHHHHhCCC
Q 028030           93 KGKPVVVYFYPADETPGCTKQACAFRDSYEKFKKAG--AEVIGISGDDSSSHKAFAKKYRLPYTLLSDEGNKVRKEWGVP  170 (215)
Q Consensus        93 ~gk~~ll~f~~a~~C~~C~~~~~~l~~l~~~~~~~~--v~vv~vs~d~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~g~~  170 (215)
                      ++++++|.|| ++||++|+...|.+.++++++++.+  +.+..+..+                     ....+.+.|++.
T Consensus        14 ~~~~vlv~f~-a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~~~vd~~---------------------~~~~~~~~~~I~   71 (104)
T cd03000          14 KEDIWLVDFY-APWCGHCKKLEPVWNEVGAELKSSGSPVRVGKLDAT---------------------AYSSIASEFGVR   71 (104)
T ss_pred             cCCeEEEEEE-CCCCHHHHhhChHHHHHHHHHHhcCCcEEEEEEECc---------------------cCHhHHhhcCCc
Confidence            4579999999 9999999999999999999997654  555555543                     234677889998


Q ss_pred             ccCCCCCCccEEEEEcCCCcEEEEEeCC
Q 028030          171 ADFFGSLPGRQTYILDKNGVVQLIYNNQ  198 (215)
Q Consensus       171 ~~~~g~~p~~~~~lid~~G~v~~~~~g~  198 (215)
                      .     +|  ++++++ +|. ...+.|.
T Consensus        72 ~-----~P--t~~l~~-~~~-~~~~~G~   90 (104)
T cd03000          72 G-----YP--TIKLLK-GDL-AYNYRGP   90 (104)
T ss_pred             c-----cc--EEEEEc-CCC-ceeecCC
Confidence            7     89  888884 554 4556664

The TMX3 transcript is found in a variety of tissues with the highest levels detected in skeletal muscle and the heart. In vitro, TMX3 showed oxidase activity albeit slightly lower than that of protein disulfide isomerase.

>cd02997 PDI_a_PDIR PDIa family, PDIR subfamily; composed of proteins similar to human PDIR (for Protein Disulfide Isomerase Related)

Probab=99.16  E-value=5.5e-10  Score=78.20  Aligned_cols=79  Identities=23%  Similarity=0.334  Sum_probs=61.5

Q ss_pred             CCCcEEEEEEcCCCChhhHHHHHHHHHHHHHHHHc-CcEEEEEeCCCHHHHHHHHHHcCCCeEEEEcCChhHHHHhCCCc
Q 028030           93 KGKPVVVYFYPADETPGCTKQACAFRDSYEKFKKA-GAEVIGISGDDSSSHKAFAKKYRLPYTLLSDEGNKVRKEWGVPA  171 (215)
Q Consensus        93 ~gk~~ll~f~~a~~C~~C~~~~~~l~~l~~~~~~~-~v~vv~vs~d~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~g~~~  171 (215)
                      ++++++|.|| ++||++|+...+.+.++.+++++. .+.++.+..+.                   +....+.+.|++..
T Consensus        16 ~~~~~~v~f~-a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~id~~~-------------------~~~~~~~~~~~i~~   75 (104)
T cd02997          16 KEKHVLVMFY-APWCGHCKKMKPEFTKAATELKEDGKGVLAAVDCTK-------------------PEHDALKEEYNVKG   75 (104)
T ss_pred             hCCCEEEEEE-CCCCHHHHHhCHHHHHHHHHHhhCCceEEEEEECCC-------------------CccHHHHHhCCCcc
Confidence            4679999999 999999999999999999988753 35666665543                   12567888899986


Q ss_pred             cCCCCCCccEEEEEcCCCcEEEEEeCCC
Q 028030          172 DFFGSLPGRQTYILDKNGVVQLIYNNQF  199 (215)
Q Consensus       172 ~~~g~~p~~~~~lid~~G~v~~~~~g~~  199 (215)
                           +|  +++ +.++|+++..+.|..
T Consensus        76 -----~P--t~~-~~~~g~~~~~~~g~~   95 (104)
T cd02997          76 -----FP--TFK-YFENGKFVEKYEGER   95 (104)
T ss_pred             -----cc--EEE-EEeCCCeeEEeCCCC
Confidence                 89  554 557899888887754

PDIR is composed of three redox active TRX (a) domains and an N-terminal redox inactive TRX-like (b) domain. Similar to PDI, it is involved in oxidative protein folding in the endoplasmic reticulum (ER) through its isomerase and chaperone activities. These activities are lower compared to PDI, probably due to PDIR acting only on a subset of proteins. PDIR is preferentially expressed in cells actively secreting proteins and its expression is induced by stress. Similar to PDI, the isomerase and chaperone activities of PDIR are independent; CXXC mutants lacking isomerase activity retain chaperone activity.

>cd03006 PDI_a_EFP1_N PDIa family, N-terminal EFP1 subfamily; EFP1 is a binding partner protein of thyroid oxidase (ThOX), also called Duox

Probab=99.15  E-value=2.9e-10  Score=81.40  Aligned_cols=76  Identities=12%  Similarity=0.078  Sum_probs=60.7

Q ss_pred             CCCcEEEEEEcCCCChhhHHHHHHHHHHHHHHHHcCcEEEEEeCCCHHHHHHHHHHcCCCeEEEEcCChhHH-HHhCCCc
Q 028030           93 KGKPVVVYFYPADETPGCTKQACAFRDSYEKFKKAGAEVIGISGDDSSSHKAFAKKYRLPYTLLSDEGNKVR-KEWGVPA  171 (215)
Q Consensus        93 ~gk~~ll~f~~a~~C~~C~~~~~~l~~l~~~~~~~~v~vv~vs~d~~~~~~~~~~~~~~~~~~~~d~~~~~~-~~~g~~~  171 (215)
                      .++++||.|| ++||++|+...|.+.++++++++. +.++.|+.|                     .+..+. +.|++..
T Consensus        28 ~~~~vlV~Fy-A~WC~~Ck~l~p~~~~la~~~~~~-v~~~~Vd~d---------------------~~~~l~~~~~~I~~   84 (113)
T cd03006          28 DAEVSLVMYY-APWDAQSQAARQEFEQVAQKLSDQ-VLFVAINCW---------------------WPQGKCRKQKHFFY   84 (113)
T ss_pred             CCCEEEEEEE-CCCCHHHHHHHHHHHHHHHHhcCC-eEEEEEECC---------------------CChHHHHHhcCCcc
Confidence            4689999999 999999999999999999999764 778888764                     334555 4788887


Q ss_pred             cCCCCCCccEEEEEcCCCcEEEEEeCCC
Q 028030          172 DFFGSLPGRQTYILDKNGVVQLIYNNQF  199 (215)
Q Consensus       172 ~~~g~~p~~~~~lid~~G~v~~~~~g~~  199 (215)
                           +|  ++.++ ++|+....+.|..
T Consensus        85 -----~P--Tl~lf-~~g~~~~~y~G~~  104 (113)
T cd03006          85 -----FP--VIHLY-YRSRGPIEYKGPM  104 (113)
T ss_pred             -----cC--EEEEE-ECCccceEEeCCC
Confidence                 99  77777 7888777777753

ThOX proteins are responsible for the generation of hydrogen peroxide, a crucial substrate of thyroperoxidase, which functions to iodinate thyroglobulin and synthesize thyroid hormones. EFP1 was isolated through a yeast two-hybrid method using the EF-hand fragment of dog Duox1 as a bait. It could be one of the partners in the assembly of a multiprotein complex constituting the thyroid hydrogen peroxide generating system. EFP1 contains two TRX domains related to the redox active TRX domains of protein disulfide isomerase (PDI). This subfamily is composed of the N-terminal TRX domain of EFP1, which contains a CXXS sequence in place of the typical CXXC motif, similar to ERp44. The CXXS motif allows the formation of stable mixed disulfides, crucial for the ER-retention function of ERp44.

>TIGR01295 PedC_BrcD bacteriocin transport accessory protein, putative

Probab=99.14  E-value=5.5e-10  Score=81.12  Aligned_cols=88  Identities=13%  Similarity=0.241  Sum_probs=61.9

Q ss_pred             CCCcEEEEEEcCCCChhhHHHHHHHHHHHHHHHHcCcEEEEEeCCCH--------HHHHHHHHHcCCCeEEEEcCChhHH
Q 028030           93 KGKPVVVYFYPADETPGCTKQACAFRDSYEKFKKAGAEVIGISGDDS--------SSHKAFAKKYRLPYTLLSDEGNKVR  164 (215)
Q Consensus        93 ~gk~~ll~f~~a~~C~~C~~~~~~l~~l~~~~~~~~v~vv~vs~d~~--------~~~~~~~~~~~~~~~~~~d~~~~~~  164 (215)
                      .|+.++|+|+ ++|||+|+...|.|.++.++   .++.+..|++|..        +++.++.+.+++..           
T Consensus        22 ~~~~~iv~f~-~~~Cp~C~~~~P~l~~~~~~---~~~~~y~vdvd~~~~~~~~~~~~~~~~~~~~~i~~-----------   86 (122)
T TIGR01295        22 KKETATFFIG-RKTCPYCRKFSGTLSGVVAQ---TKAPIYYIDSENNGSFEMSSLNDLTAFRSRFGIPT-----------   86 (122)
T ss_pred             cCCcEEEEEE-CCCChhHHHHhHHHHHHHHh---cCCcEEEEECCCccCcCcccHHHHHHHHHHcCCcc-----------
Confidence            3678899999 99999999999999999887   3477888887632        24445555544431           


Q ss_pred             HHhCCCccCCCCCCccEEEEEcCCCcEEEEEeCCCCCCccHH
Q 028030          165 KEWGVPADFFGSLPGRQTYILDKNGVVQLIYNNQFQPEKHID  206 (215)
Q Consensus       165 ~~~g~~~~~~g~~p~~~~~lid~~G~v~~~~~g~~~~~~~~~  206 (215)
                         ++.+     +|  +++++ ++|+.+.+..|...+.+.++
T Consensus        87 ---~i~~-----~P--T~v~~-k~Gk~v~~~~G~~~~~~~l~  117 (122)
T TIGR01295        87 ---SFMG-----TP--TFVHI-TDGKQVSVRCGSSTTAQELQ  117 (122)
T ss_pred             ---cCCC-----CC--EEEEE-eCCeEEEEEeCCCCCHHHHH
Confidence               3333     88  66666 89999999988543333333

This model describes a small family of proteins believed to aid in the export of various class II bacteriocins, which are ribosomally-synthesized, non-lantibiotic bacterial peptide antibiotics. Members of this family are found in operons for pediocin PA-1 from Pediococcus acidilactici and brochocin-C from Brochothrix campestris.

>cd02984 TRX_PICOT TRX domain, PICOT (for PKC-interacting cousin of TRX) subfamily; PICOT is a protein that interacts with protein kinase C (PKC) theta, a calcium independent PKC isoform selectively expressed in skeletal muscle and T lymphocytes

Probab=99.13  E-value=1e-09  Score=75.99  Aligned_cols=74  Identities=16%  Similarity=0.292  Sum_probs=60.5

Q ss_pred             CCcEEEEEEcCCCChhhHHHHHHHHHHHHHHHHcCcEEEEEeCCCHHHHHHHHHHcCCCeEEEEcCChhHHHHhCCCccC
Q 028030           94 GKPVVVYFYPADETPGCTKQACAFRDSYEKFKKAGAEVIGISGDDSSSHKAFAKKYRLPYTLLSDEGNKVRKEWGVPADF  173 (215)
Q Consensus        94 gk~~ll~f~~a~~C~~C~~~~~~l~~l~~~~~~~~v~vv~vs~d~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~g~~~~~  173 (215)
                      +++++|+|| ++||++|+...+.|.++.+++. .++.++.|..+                     ....+.+.|++..  
T Consensus        14 ~~~v~v~f~-~~~C~~C~~~~~~l~~l~~~~~-~~i~~~~vd~~---------------------~~~~~~~~~~i~~--   68 (97)
T cd02984          14 SKLLVLHFW-APWAEPCKQMNQVFEELAKEAF-PSVLFLSIEAE---------------------ELPEISEKFEITA--   68 (97)
T ss_pred             CCEEEEEEE-CCCCHHHHHHhHHHHHHHHHhC-CceEEEEEccc---------------------cCHHHHHhcCCcc--
Confidence            689999999 9999999999999999998873 35777777542                     3456788899987  


Q ss_pred             CCCCCccEEEEEcCCCcEEEEEeCC
Q 028030          174 FGSLPGRQTYILDKNGVVQLIYNNQ  198 (215)
Q Consensus       174 ~g~~p~~~~~lid~~G~v~~~~~g~  198 (215)
                         +|  +++++ ++|+++....|.
T Consensus        69 ---~P--t~~~~-~~g~~~~~~~g~   87 (97)
T cd02984          69 ---VP--TFVFF-RNGTIVDRVSGA   87 (97)
T ss_pred             ---cc--EEEEE-ECCEEEEEEeCC
Confidence               89  77777 589999888884

PICOT contains an N-terminal TRX-like domain, which does not contain the catalytic CXXC motif, followed by one to three glutaredoxin domains. The TRX-like domain is required for interaction with PKC theta. PICOT inhibits the activation of c-Jun N-terminal kinase and the transcription factors, AP-1 and NF-kB, induced by PKC theta or T-cell activating stimuli.

>cd02959 ERp19 Endoplasmic reticulum protein 19 (ERp19) family; ERp19 is also known as ERp18, a protein located in the ER containing one redox active TRX domain

Probab=99.12  E-value=1.8e-10  Score=83.03  Aligned_cols=80  Identities=21%  Similarity=0.290  Sum_probs=55.6

Q ss_pred             CcCCCcEEEEEEcCCCChhhHHHHHHHHHHHHHHHHcCcEEEEEeCCCHHHHHHHHHHcCCCeEEEEcCChhHHHHhCCC
Q 028030           91 KFKGKPVVVYFYPADETPGCTKQACAFRDSYEKFKKAGAEVIGISGDDSSSHKAFAKKYRLPYTLLSDEGNKVRKEWGVP  170 (215)
Q Consensus        91 ~~~gk~~ll~f~~a~~C~~C~~~~~~l~~l~~~~~~~~v~vv~vs~d~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~g~~  170 (215)
                      ...||++||+|| ++||++|+...+.+.+..+.... +..++.|.+|...                    ......|++.
T Consensus        16 ~~~~kpVlV~F~-a~WC~~C~~~~~~~~~~~~~~~~-~~~fv~v~vd~~~--------------------~~~~~~~~~~   73 (117)
T cd02959          16 KDSGKPLMLLIH-KTWCGACKALKPKFAESKEISEL-SHNFVMVNLEDDE--------------------EPKDEEFSPD   73 (117)
T ss_pred             HHcCCcEEEEEe-CCcCHHHHHHHHHHhhhHHHHhh-cCcEEEEEecCCC--------------------CchhhhcccC
Confidence            346899999999 99999999999999997665543 3456666554321                    0112244443


Q ss_pred             ccCCCCCCccEEEEEcCCCcEEEEEeC
Q 028030          171 ADFFGSLPGRQTYILDKNGVVQLIYNN  197 (215)
Q Consensus       171 ~~~~g~~p~~~~~lid~~G~v~~~~~g  197 (215)
                      +   +.+|  +++++|++|+++.++.+
T Consensus        74 g---~~vP--t~~f~~~~Gk~~~~~~~   95 (117)
T cd02959          74 G---GYIP--RILFLDPSGDVHPEIIN   95 (117)
T ss_pred             C---Cccc--eEEEECCCCCCchhhcc
Confidence            2   1278  99999999999875433

Denaturation studies indicate that the reduced form is more stable than the oxidized form, suggesting that the protein is involved in disulfide bond formation. In vitro, ERp19 has been shown to possess thiol-disulfide oxidase activity which is dependent on the presence of both active site cysteines. Although described as protein disulfide isomerase (PDI)-like, the protein does not complement for PDI activity. ERp19 shows a wide tissue distribution but is most abundant in liver, testis, heart and kidney.

>PF00085 Thioredoxin: Thioredoxin; InterPro: IPR013766 Thioredoxins [, , , ] are small disulphide-containing redox proteins that have been found in all the kingdoms of living organisms

Probab=99.12  E-value=1.5e-09  Score=75.66  Aligned_cols=85  Identities=28%  Similarity=0.521  Sum_probs=69.2

Q ss_pred             CCcEEEEEEcCCCChhhHHHHHHHHHHHHHHHHcCcEEEEEeCCCHHHHHHHHHHcCCCeEEEEcCChhHHHHhCCCccC
Q 028030           94 GKPVVVYFYPADETPGCTKQACAFRDSYEKFKKAGAEVIGISGDDSSSHKAFAKKYRLPYTLLSDEGNKVRKEWGVPADF  173 (215)
Q Consensus        94 gk~~ll~f~~a~~C~~C~~~~~~l~~l~~~~~~~~v~vv~vs~d~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~g~~~~~  173 (215)
                      ++++||.|| +.||++|+...|.+.++.+++++ ++.++.|..                     +....+.+.|++..  
T Consensus        17 ~~~vvv~f~-~~~C~~C~~~~~~~~~~~~~~~~-~v~~~~vd~---------------------~~~~~l~~~~~v~~--   71 (103)
T PF00085_consen   17 DKPVVVYFY-APWCPPCKAFKPILEKLAKEYKD-NVKFAKVDC---------------------DENKELCKKYGVKS--   71 (103)
T ss_dssp             SSEEEEEEE-STTSHHHHHHHHHHHHHHHHTTT-TSEEEEEET---------------------TTSHHHHHHTTCSS--
T ss_pred             CCCEEEEEe-CCCCCccccccceeccccccccc-ccccchhhh---------------------hccchhhhccCCCC--
Confidence            689999999 99999999999999999999987 688888875                     34467888999987  


Q ss_pred             CCCCCccEEEEEcCCCcEEEEEeCCCCCCccHHHHHHHHh
Q 028030          174 FGSLPGRQTYILDKNGVVQLIYNNQFQPEKHIDETLKFLQ  213 (215)
Q Consensus       174 ~g~~p~~~~~lid~~G~v~~~~~g~~~~~~~~~~il~~l~  213 (215)
                         +|  +++++ ++|+....+.|..    ..+++.+.|+
T Consensus        72 ---~P--t~~~~-~~g~~~~~~~g~~----~~~~l~~~i~  101 (103)
T PF00085_consen   72 ---VP--TIIFF-KNGKEVKRYNGPR----NAESLIEFIE  101 (103)
T ss_dssp             ---SS--EEEEE-ETTEEEEEEESSS----SHHHHHHHHH
T ss_pred             ---CC--EEEEE-ECCcEEEEEECCC----CHHHHHHHHH
Confidence               99  77766 6888888888853    3455666555

Thioredoxin serves as a general protein disulphide oxidoreductase. It interacts with a broad range of proteins by a redox mechanism based on reversible oxidation of two cysteine thiol groups to a disulphide, accompanied by the transfer of two electrons and two protons. The net result is the covalent interconversion of a disulphide and a dithiol. In the NADPH-dependent protein disulphide reduction, thioredoxin reductase (TR) catalyses the reduction of oxidised thioredoxin (trx) by NADPH using FAD and its redox-active disulphide; reduced thioredoxin then directly reduces the disulphide in the substrate protein []. Thioredoxin is present in prokaryotes and eukaryotes and the sequence around the redox-active disulphide bond is well conserved. All thioredoxins contain a cis-proline located in a loop preceding beta-strand 4, which makes contact with the active site cysteines, and is important for stability and function []. Thioredoxin belongs to a structural family that includes glutaredoxin, glutathione peroxidase, bacterial protein disulphide isomerase DsbA, and the N-terminal domain of glutathione transferase []. Thioredoxins have a beta-alpha unit preceding the motif common to all these proteins. A number of eukaryotic proteins contain domains evolutionary related to thioredoxin, most of them are protein disulphide isomerases (PDI). PDI (5.3.4.1 from EC) [, , ] is an endoplasmic reticulum multi-functional enzyme that catalyses the formation and rearrangement of disulphide bonds during protein folding []. All PDI contains two or three (ERp72) copies of the thioredoxin domain, each of which contributes to disulphide isomerase activity, but which are functionally non-equivalent []. Moreover, PDI exhibits chaperone-like activity towards proteins that contain no disulphide bonds, i.e. behaving independently of its disulphide isomerase activity []. The various forms of PDI which are currently known are: PDI major isozyme; a multifunctional protein that also function as the beta subunit of prolyl 4-hydroxylase (1.14.11.2 from EC), as a component of oligosaccharyl transferase (2.4.1.119 from EC), as thyroxine deiodinase (3.8.1.4 from EC), as glutathione-insulin transhydrogenase (1.8.4.2 from EC) and as a thyroid hormone-binding protein ERp60 (ER-60; 58 Kd microsomal protein). ERp60 was originally thought to be a phosphoinositide-specific phospholipase C isozyme and later to be a protease. ERp72. ERp5. Bacterial proteins that act as thiol:disulphide interchange proteins that allows disulphide bond formation in some periplasmic proteins also contain a thioredoxin domain. These proteins include: Escherichia coli DsbA (or PrfA) and its orthologs in Vibrio cholerae (TtcpG) and Haemophilus influenzae (Por). E. coli DsbC (or XpRA) and its orthologues in Erwinia chrysanthemi and H. influenzae. E. coli DsbD (or DipZ) and its H. influenzae orthologue. E. coli DsbE (or CcmG) and orthologues in H. influenzae. Rhodobacter capsulatus (Rhodopseudomonas capsulata) (HelX), Rhiziobiacae (CycY and TlpA). This entry represents the thioredoxin domain.; GO: 0045454 cell redox homeostasis; PDB: 3ED3_B 1EP7_A 1EP8_B 1TOF_A 2OE3_B 2OE1_B 2OE0_B 1V98_A 3H79_A 3CXG_A ....

>cd02996 PDI_a_ERp44 PDIa family, endoplasmic reticulum protein 44 (ERp44) subfamily; ERp44 is an ER-resident protein, induced during stress, involved in thiol-mediated ER retention

Probab=99.11  E-value=1e-09  Score=77.79  Aligned_cols=85  Identities=19%  Similarity=0.316  Sum_probs=62.8

Q ss_pred             CCCcEEEEEEcCCCChhhHHHHHHHHHHHHHHHHc-----CcEEEEEeCCCHHHHHHHHHHcCCCeEEEEcCChhHHHHh
Q 028030           93 KGKPVVVYFYPADETPGCTKQACAFRDSYEKFKKA-----GAEVIGISGDDSSSHKAFAKKYRLPYTLLSDEGNKVRKEW  167 (215)
Q Consensus        93 ~gk~~ll~f~~a~~C~~C~~~~~~l~~l~~~~~~~-----~v~vv~vs~d~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~  167 (215)
                      .++++||.|| ++||++|+...|.+.++++++++.     .+.+..|..                     |.+..+.++|
T Consensus        17 ~~~~vlv~F~-a~wC~~C~~~~p~~~~~a~~~~~~~~~~~~~~~~~vd~---------------------d~~~~l~~~~   74 (108)
T cd02996          17 SAELVLVNFY-ADWCRFSQMLHPIFEEAAAKIKEEFPDAGKVVWGKVDC---------------------DKESDIADRY   74 (108)
T ss_pred             cCCEEEEEEE-CCCCHHHHhhHHHHHHHHHHHhhccCCCCcEEEEEEEC---------------------CCCHHHHHhC
Confidence            3678999999 999999999999999999887642     245555554                     4556788899


Q ss_pred             CCCccCCCCCCccEEEEEcCCCcE-EEEEeCCCCCCccHHHHHHH
Q 028030          168 GVPADFFGSLPGRQTYILDKNGVV-QLIYNNQFQPEKHIDETLKF  211 (215)
Q Consensus       168 g~~~~~~g~~p~~~~~lid~~G~v-~~~~~g~~~~~~~~~~il~~  211 (215)
                      ++..     +|  +++++ ++|++ ...+.|.    ...+++.+.
T Consensus        75 ~v~~-----~P--tl~~~-~~g~~~~~~~~g~----~~~~~l~~f  107 (108)
T cd02996          75 RINK-----YP--TLKLF-RNGMMMKREYRGQ----RSVEALAEF  107 (108)
T ss_pred             CCCc-----CC--EEEEE-eCCcCcceecCCC----CCHHHHHhh
Confidence            9987     99  77777 78884 3555563    344555543

It contains an N-terminal TRX domain, similar to that of PDIa, with a CXFS motif followed by two redox inactive TRX-like domains, homologous to the b and b' domains of PDI. The CXFS motif in the N-terminal domain allows ERp44 to form stable reversible mixed disulfides with its substrates. Through this activity, ERp44 mediates the ER localization of Ero1alpha, a protein that oxidizes protein disulfide isomerases into their active form. ERp44 also prevents the secretion of unassembled cargo protein with unpaired cysteines. It also modulates the activity of inositol 1,4,5-triphosphate type I receptor (IP3R1), an intracellular channel protein that mediates calcium release from the ER to the cytosol.

>TIGR01126 pdi_dom protein disulfide-isomerase domain

Probab=99.10  E-value=6.3e-10  Score=77.48  Aligned_cols=87  Identities=17%  Similarity=0.320  Sum_probs=66.1

Q ss_pred             CCCcEEEEEEcCCCChhhHHHHHHHHHHHHHHHHcC-cEEEEEeCCCHHHHHHHHHHcCCCeEEEEcCChhHHHHhCCCc
Q 028030           93 KGKPVVVYFYPADETPGCTKQACAFRDSYEKFKKAG-AEVIGISGDDSSSHKAFAKKYRLPYTLLSDEGNKVRKEWGVPA  171 (215)
Q Consensus        93 ~gk~~ll~f~~a~~C~~C~~~~~~l~~l~~~~~~~~-v~vv~vs~d~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~g~~~  171 (215)
                      ++++++|.|| ++||+.|+...+.++++++.++..+ +.++.+..                     |....+...|++..
T Consensus        12 ~~~~~~i~f~-~~~C~~c~~~~~~~~~~~~~~~~~~~~~~~~~d~---------------------~~~~~~~~~~~i~~   69 (102)
T TIGR01126        12 SNKDVLVEFY-APWCGHCKNLAPEYEKLAKELKGDPDIVLAKVDA---------------------TAEKDLASRFGVSG   69 (102)
T ss_pred             cCCcEEEEEE-CCCCHHHHhhChHHHHHHHHhccCCceEEEEEEc---------------------cchHHHHHhCCCCc
Confidence            6899999999 9999999999999999998887653 66665654                     33457778899987


Q ss_pred             cCCCCCCccEEEEEcCCCcEEEEEeCCCCCCccHHHHHHHHh
Q 028030          172 DFFGSLPGRQTYILDKNGVVQLIYNNQFQPEKHIDETLKFLQ  213 (215)
Q Consensus       172 ~~~g~~p~~~~~lid~~G~v~~~~~g~~~~~~~~~~il~~l~  213 (215)
                           +|  +++++++++. ...+.|...    .+++...|+
T Consensus        70 -----~P--~~~~~~~~~~-~~~~~g~~~----~~~l~~~i~   99 (102)
T TIGR01126        70 -----FP--TIKFFPKGKK-PVDYEGGRD----LEAIVEFVN   99 (102)
T ss_pred             -----CC--EEEEecCCCc-ceeecCCCC----HHHHHHHHH
Confidence                 89  9999988887 556777432    344444443

This model describes a domain of eukaryotic protein disulfide isomerases, generally found in two copies. The high cutoff for total score reflects the expectation of finding both copies. The domain is similar to thioredoxin but the redox-active disulfide region motif is APWCGHCK.

>cd02986 DLP Dim1 family, Dim1-like protein (DLP) subfamily; DLP is a novel protein which shares 38% sequence identity to Dim1

Probab=99.10  E-value=1.7e-09  Score=76.82  Aligned_cols=75  Identities=17%  Similarity=0.202  Sum_probs=59.7

Q ss_pred             CCCcEEEEEEcCCCChhhHHHHHHHHHHHHHHHHcCcEEEEEeCCCHHHHHHHHHHcCCCeEEEEcCChhHHHHhCCCcc
Q 028030           93 KGKPVVVYFYPADETPGCTKQACAFRDSYEKFKKAGAEVIGISGDDSSSHKAFAKKYRLPYTLLSDEGNKVRKEWGVPAD  172 (215)
Q Consensus        93 ~gk~~ll~f~~a~~C~~C~~~~~~l~~l~~~~~~~~v~vv~vs~d~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~g~~~~  172 (215)
                      .+|++||.|+ ++||++|+..-|.|.++++++++. +.++.|.+                     |+..++...|++.. 
T Consensus        13 ~~klVVVdF~-a~WC~pCk~mdp~l~ela~~~~~~-~~f~kVDV---------------------Dev~dva~~y~I~a-   68 (114)
T cd02986          13 AEKVLVLRFG-RDEDAVCLQLDDILSKTSHDLSKM-ASIYLVDV---------------------DKVPVYTQYFDISY-   68 (114)
T ss_pred             CCCEEEEEEe-CCCChhHHHHHHHHHHHHHHccCc-eEEEEEec---------------------cccHHHHHhcCcee-
Confidence            5799999999 999999999999999999999743 77777876                     45567788888886 


Q ss_pred             CCCCCCccEEEEEcCCCcEEEEEeCC
Q 028030          173 FFGSLPGRQTYILDKNGVVQLIYNNQ  198 (215)
Q Consensus       173 ~~g~~p~~~~~lid~~G~v~~~~~g~  198 (215)
                          +|  +++++ ++|+-.....|.
T Consensus        69 ----mP--tfvff-kngkh~~~d~gt   87 (114)
T cd02986          69 ----IP--STIFF-FNGQHMKVDYGS   87 (114)
T ss_pred             ----Cc--EEEEE-ECCcEEEEecCC
Confidence                88  55555 677766665553

Like Dim1, it is also implicated in pre-mRNA splicing and cell cycle progression. DLP is located in the nucleus and has been shown to interact with the U5 small nuclear ribonucleoprotein particle (snRNP)-specific 102kD protein (or Prp6). Dim1 protein, also known as U5 snRNP-specific 15kD protein is a component of U5 snRNP, which pre-assembles with U4/U6 snRNPs to form a [U4/U6:U5] tri-snRNP complex required for pre-mRNA splicing. Dim1 adopts a thioredoxin fold but does not contain the redox active CXXC motif.

>cd02962 TMX2 TMX2 family; composed of proteins similar to human TMX2, a 372-amino acid TRX-related transmembrane protein, identified and characterized through the cloning of its cDNA from a human fetal library

Probab=99.10  E-value=7.1e-10  Score=83.40  Aligned_cols=80  Identities=18%  Similarity=0.223  Sum_probs=60.3

Q ss_pred             CCCcEEEEEEcCCCChhhHHHHHHHHHHHHHHHHcCcEEEEEeCCCHHHHHHHHHHcCCCeEEEEcCChhHHHHhCCCcc
Q 028030           93 KGKPVVVYFYPADETPGCTKQACAFRDSYEKFKKAGAEVIGISGDDSSSHKAFAKKYRLPYTLLSDEGNKVRKEWGVPAD  172 (215)
Q Consensus        93 ~gk~~ll~f~~a~~C~~C~~~~~~l~~l~~~~~~~~v~vv~vs~d~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~g~~~~  172 (215)
                      +++++||+|| ++||++|+...|.++++++++.+.++.++.|+.|...                     ++.+.|++...
T Consensus        46 ~~~~vvV~Fy-a~wC~~Ck~l~p~l~~la~~~~~~~v~f~~VDvd~~~---------------------~la~~~~V~~~  103 (152)
T cd02962          46 KRVTWLVEFF-TTWSPECVNFAPVFAELSLKYNNNNLKFGKIDIGRFP---------------------NVAEKFRVSTS  103 (152)
T ss_pred             CCCEEEEEEE-CCCCHHHHHHHHHHHHHHHHcccCCeEEEEEECCCCH---------------------HHHHHcCceec
Confidence            4578999999 9999999999999999999998667999999875443                     34444444320


Q ss_pred             -CCCCCCccEEEEEcCCCcEEEEEeC
Q 028030          173 -FFGSLPGRQTYILDKNGVVQLIYNN  197 (215)
Q Consensus       173 -~~g~~p~~~~~lid~~G~v~~~~~g  197 (215)
                       ....+|  +++++ ++|+.+.+..|
T Consensus       104 ~~v~~~P--T~ilf-~~Gk~v~r~~G  126 (152)
T cd02962         104 PLSKQLP--TIILF-QGGKEVARRPY  126 (152)
T ss_pred             CCcCCCC--EEEEE-ECCEEEEEEec
Confidence             001278  77766 59999998887

It contains a TRX domain but the redox active CXXC motif is replaced with SXXC. Sequence analysis predicts that TMX2 may be a Type I membrane protein, with its C-terminal half protruding on the luminal side of the endoplasmic reticulum (ER). In addition to the TRX domain, transmembrane region and ER-retention signal, TMX2 also contains a Myb DNA-binding domain repeat signature and a dileucine motif in the tail.

>PF00837 T4_deiodinase: Iodothyronine deiodinase; InterPro: IPR000643 Iodothyronine deiodinase (1

Probab=99.07  E-value=2.5e-09  Score=84.89  Aligned_cols=137  Identities=20%  Similarity=0.343  Sum_probs=98.8

Q ss_pred             ccCCCCCCCCCeEEeCCCCCe-eecCCc-C-CCcEEEEEEcCCCChhhHHHHHHHHHHHHHHHHc-CcEEEEEe----CC
Q 028030           66 AKVSKGQAPPSFTLKDQEGRN-VSLSKF-K-GKPVVVYFYPADETPGCTKQACAFRDSYEKFKKA-GAEVIGIS----GD  137 (215)
Q Consensus        66 ~~~~~g~~~P~f~l~~~~g~~-~~l~~~-~-gk~~ll~f~~a~~C~~C~~~~~~l~~l~~~~~~~-~v~vv~vs----~d  137 (215)
                      ....+|..+|+..+.+.+|+. .++-|+ + ++++||+|. +..||+-...+..++++.++|.+. ++-+|.|.    .|
T Consensus        71 ~~a~~G~~APns~vv~l~g~~~~~ildf~~g~RPLVlnFG-S~TCPpF~~~l~~f~~l~~~f~d~adFl~VYI~EAHpsD  149 (237)
T PF00837_consen   71 KEAKLGGPAPNSPVVTLDGQRSCRILDFAKGNRPLVLNFG-SCTCPPFMAKLDAFKRLVEDFSDVADFLIVYIEEAHPSD  149 (237)
T ss_pred             cceeCCCCCCCCceEeeCCCcceeHHHhccCCCCeEEEcc-cccchHHHHHHHHHHHHHHHhhhhhheehhhHhhhCcCC
Confidence            456789999999999999998 899998 4 589999999 777999999999999999999974 34444442    12


Q ss_pred             ------C----------HH--HHHHHHHHcCCCeEEEEcC-ChhHHHHhCCCccCCCCCCccEEEEEcCCCcEEEEEe-C
Q 028030          138 ------D----------SS--SHKAFAKKYRLPYTLLSDE-GNKVRKEWGVPADFFGSLPGRQTYILDKNGVVQLIYN-N  197 (215)
Q Consensus       138 ------~----------~~--~~~~~~~~~~~~~~~~~d~-~~~~~~~~g~~~~~~g~~p~~~~~lid~~G~v~~~~~-g  197 (215)
                            +          ++  .+.+.+.+.....+++.|. ++...++||..       |. +.||| .+|||++... |
T Consensus       150 gW~~~~~~~~i~qh~sledR~~aA~~l~~~~~~~pi~vD~mdN~~~~~YgA~-------Pe-RlyIi-~~gkv~Y~Gg~G  220 (237)
T PF00837_consen  150 GWAFGNNPYEIPQHRSLEDRLRAAKLLKEEFPQCPIVVDTMDNNFNKAYGAL-------PE-RLYII-QDGKVVYKGGPG  220 (237)
T ss_pred             CccCCCCceeecCCCCHHHHHHHHHHHHhhCCCCCEEEEccCCHHHHHhCCC-------cc-eEEEE-ECCEEEEeCCCC
Confidence                  1          11  2333444444678888775 67788889885       43 57777 4999987753 3


Q ss_pred             CCCCCccHHHHHHHHhc
Q 028030          198 QFQPEKHIDETLKFLQS  214 (215)
Q Consensus       198 ~~~~~~~~~~il~~l~~  214 (215)
                      +.  .=+.+++.+.|++
T Consensus       221 P~--~y~~~e~r~~L~~  235 (237)
T PF00837_consen  221 PF--GYSPEELREWLEK  235 (237)
T ss_pred             CC--cCCHHHHHHHHHh
Confidence            32  3345666666654

97.1.10 from EC) (DI) [] is the vertebrate enzyme responsible for the deiodination of the prohormone thyroxine (T4 or 3,5,3',5'-tetraiodothyronine) into the biologically active hormone T3 (3,5,3'-triiodothyronine) and of T3 into the inactive metabolite T2 (3,3'-diiodothyronine). All known DI are proteins of about 250 residues that contain a selenocysteine at their active site. Three types of DI are known, type II is essential for providing the brain with the appropriate levels of T3 during the critical period of development, and type III is essential for the regulation of thyroid hormone inactivation during embryological development.; GO: 0004800 thyroxine 5'-deiodinase activity, 0055114 oxidation-reduction process

>cd02952 TRP14_like Human TRX-related protein 14 (TRP14)-like family; composed of proteins similar to TRP14, a 14kD cytosolic protein that shows disulfide reductase activity in vitro with a different substrate specificity compared with another human cytosolic protein, TRX1

Probab=99.07  E-value=4.7e-10  Score=80.82  Aligned_cols=78  Identities=19%  Similarity=0.304  Sum_probs=63.4

Q ss_pred             CCCcEEEEEEcC-------CCChhhHHHHHHHHHHHHHHHHcCcEEEEEeCCCHHHHHHHHHHcCCCeEEEEcCChhHHH
Q 028030           93 KGKPVVVYFYPA-------DETPGCTKQACAFRDSYEKFKKAGAEVIGISGDDSSSHKAFAKKYRLPYTLLSDEGNKVRK  165 (215)
Q Consensus        93 ~gk~~ll~f~~a-------~~C~~C~~~~~~l~~l~~~~~~~~v~vv~vs~d~~~~~~~~~~~~~~~~~~~~d~~~~~~~  165 (215)
                      +|++++|+|| |       +||++|+...|.|+++.+++++ ++.++-|.+|+...              ..|.+.++..
T Consensus        20 ~~~~vvV~F~-A~~~~~~~~WC~pCr~~~P~l~~l~~~~~~-~v~fv~Vdvd~~~~--------------w~d~~~~~~~   83 (119)
T cd02952          20 EGKPIFILFY-GDKDPDGQSWCPDCVKAEPVVREALKAAPE-DCVFIYCDVGDRPY--------------WRDPNNPFRT   83 (119)
T ss_pred             CCCeEEEEEE-ccCCCCCCCCCHhHHhhchhHHHHHHHCCC-CCEEEEEEcCCccc--------------ccCcchhhHh
Confidence            5789999999 9       9999999999999999999874 48999998876542              2345678888


Q ss_pred             HhCCC-ccCCCCCCccEEEEEcCCCcEEE
Q 028030          166 EWGVP-ADFFGSLPGRQTYILDKNGVVQL  193 (215)
Q Consensus       166 ~~g~~-~~~~g~~p~~~~~lid~~G~v~~  193 (215)
                      .|++. .     +|  ++++++..++++.
T Consensus        84 ~~~I~~~-----iP--T~~~~~~~~~l~~  105 (119)
T cd02952          84 DPKLTTG-----VP--TLLRWKTPQRLVE  105 (119)
T ss_pred             ccCcccC-----CC--EEEEEcCCceecc
Confidence            89997 6     99  8888876666543

TRP14 catalyzes the reduction of small disulfide-containing peptides but does not reduce disulfides of ribonucleotide reductase, peroxiredoxin and methionine sulfoxide reductase, which are TRX1 substrates. TRP14 also plays a role in tumor necrosis factor (TNF)-alpha signaling pathways, distinct from that of TRX1. Its depletion promoted TNF-alpha induced activation of c-Jun N-terminal kinase and mitogen-activated protein kinases.

>PTZ00443 Thioredoxin domain-containing protein; Provisional

Probab=99.05  E-value=1.4e-09  Score=86.75  Aligned_cols=76  Identities=20%  Similarity=0.297  Sum_probs=60.7

Q ss_pred             CCcEEEEEEcCCCChhhHHHHHHHHHHHHHHHHcCcEEEEEeCCCHHHHHHHHHHcCCCeEEEEcCChhHHHHhCCCccC
Q 028030           94 GKPVVVYFYPADETPGCTKQACAFRDSYEKFKKAGAEVIGISGDDSSSHKAFAKKYRLPYTLLSDEGNKVRKEWGVPADF  173 (215)
Q Consensus        94 gk~~ll~f~~a~~C~~C~~~~~~l~~l~~~~~~~~v~vv~vs~d~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~g~~~~~  173 (215)
                      +++++|+|| ++||++|+...|.+.++++++++. +.+..|..+                     .+.++.+.|++..  
T Consensus        52 ~~~vlV~Fy-ApWC~~Ck~~~P~~e~la~~~~~~-v~~~~VD~~---------------------~~~~l~~~~~I~~--  106 (224)
T PTZ00443         52 TGPWFVKFY-APWCSHCRKMAPAWERLAKALKGQ-VNVADLDAT---------------------RALNLAKRFAIKG--  106 (224)
T ss_pred             CCCEEEEEE-CCCChHHHHHHHHHHHHHHHcCCC-eEEEEecCc---------------------ccHHHHHHcCCCc--
Confidence            578999999 999999999999999999998753 666555432                     3457888999987  


Q ss_pred             CCCCCccEEEEEcCCCcEEEEEeCCCC
Q 028030          174 FGSLPGRQTYILDKNGVVQLIYNNQFQ  200 (215)
Q Consensus       174 ~g~~p~~~~~lid~~G~v~~~~~g~~~  200 (215)
                         +|  ++++++ +|+++....|..+
T Consensus       107 ---~P--Tl~~f~-~G~~v~~~~G~~s  127 (224)
T PTZ00443        107 ---YP--TLLLFD-KGKMYQYEGGDRS  127 (224)
T ss_pred             ---CC--EEEEEE-CCEEEEeeCCCCC
Confidence               99  888887 8888877666433

>TIGR01068 thioredoxin thioredoxin

Probab=99.05  E-value=2e-09  Score=74.63  Aligned_cols=75  Identities=19%  Similarity=0.349  Sum_probs=61.2

Q ss_pred             CCcEEEEEEcCCCChhhHHHHHHHHHHHHHHHHcCcEEEEEeCCCHHHHHHHHHHcCCCeEEEEcCChhHHHHhCCCccC
Q 028030           94 GKPVVVYFYPADETPGCTKQACAFRDSYEKFKKAGAEVIGISGDDSSSHKAFAKKYRLPYTLLSDEGNKVRKEWGVPADF  173 (215)
Q Consensus        94 gk~~ll~f~~a~~C~~C~~~~~~l~~l~~~~~~~~v~vv~vs~d~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~g~~~~~  173 (215)
                      ++.++|.|| ++||+.|+...+.|+++.+++.+ ++.++.|..+.                     +..+.+.|++..  
T Consensus        14 ~~~vvi~f~-~~~C~~C~~~~~~l~~~~~~~~~-~~~~~~vd~~~---------------------~~~~~~~~~v~~--   68 (101)
T TIGR01068        14 DKPVLVDFW-APWCGPCKMIAPILEELAKEYEG-KVKFVKLNVDE---------------------NPDIAAKYGIRS--   68 (101)
T ss_pred             CCcEEEEEE-CCCCHHHHHhCHHHHHHHHHhcC-CeEEEEEECCC---------------------CHHHHHHcCCCc--
Confidence            579999999 99999999999999999988874 48888887543                     345667888886  


Q ss_pred             CCCCCccEEEEEcCCCcEEEEEeCCC
Q 028030          174 FGSLPGRQTYILDKNGVVQLIYNNQF  199 (215)
Q Consensus       174 ~g~~p~~~~~lid~~G~v~~~~~g~~  199 (215)
                         +|  +++++ ++|++.....|..
T Consensus        69 ---~P--~~~~~-~~g~~~~~~~g~~   88 (101)
T TIGR01068        69 ---IP--TLLLF-KNGKEVDRSVGAL   88 (101)
T ss_pred             ---CC--EEEEE-eCCcEeeeecCCC
Confidence               88  88888 6888888777753

Several proteins, such as protein disulfide isomerase, have two or more copies of a domain closely related to thioredoxin. This model is designed to recognize authentic thioredoxin, a small protein that should be hit exactly once by this model.

>PTZ00051 thioredoxin; Provisional

Probab=99.05  E-value=1.6e-09  Score=75.27  Aligned_cols=74  Identities=20%  Similarity=0.290  Sum_probs=60.4

Q ss_pred             CCCcEEEEEEcCCCChhhHHHHHHHHHHHHHHHHcCcEEEEEeCCCHHHHHHHHHHcCCCeEEEEcCChhHHHHhCCCcc
Q 028030           93 KGKPVVVYFYPADETPGCTKQACAFRDSYEKFKKAGAEVIGISGDDSSSHKAFAKKYRLPYTLLSDEGNKVRKEWGVPAD  172 (215)
Q Consensus        93 ~gk~~ll~f~~a~~C~~C~~~~~~l~~l~~~~~~~~v~vv~vs~d~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~g~~~~  172 (215)
                      .+++++|+|| ++||++|+...+.+.++++++.  ++.++.|..+                     ....+.+.|++.. 
T Consensus        17 ~~~~vli~f~-~~~C~~C~~~~~~l~~l~~~~~--~~~~~~vd~~---------------------~~~~~~~~~~v~~-   71 (98)
T PTZ00051         17 QNELVIVDFY-AEWCGPCKRIAPFYEECSKEYT--KMVFVKVDVD---------------------ELSEVAEKENITS-   71 (98)
T ss_pred             cCCeEEEEEE-CCCCHHHHHHhHHHHHHHHHcC--CcEEEEEECc---------------------chHHHHHHCCCce-
Confidence            4689999999 9999999999999999988765  4777777653                     3357888899987 


Q ss_pred             CCCCCCccEEEEEcCCCcEEEEEeCC
Q 028030          173 FFGSLPGRQTYILDKNGVVQLIYNNQ  198 (215)
Q Consensus       173 ~~g~~p~~~~~lid~~G~v~~~~~g~  198 (215)
                          +|  +++ +.++|+++..+.|.
T Consensus        72 ----~P--t~~-~~~~g~~~~~~~G~   90 (98)
T PTZ00051         72 ----MP--TFK-VFKNGSVVDTLLGA   90 (98)
T ss_pred             ----ee--EEE-EEeCCeEEEEEeCC
Confidence                99  654 55899999999884

>cd03065 PDI_b_Calsequestrin_N PDIb family, Calsequestrin subfamily, N-terminal TRX-fold domain; Calsequestrin is the major calcium storage protein in the sarcoplasmic reticulum (SR) of skeletal and cardiac muscle

Probab=99.04  E-value=1.3e-09  Score=78.79  Aligned_cols=75  Identities=16%  Similarity=0.200  Sum_probs=60.0

Q ss_pred             CcEEEEEEcCCCChh--hH--HHHHHHHHHHHHHH-HcCcEEEEEeCCCHHHHHHHHHHcCCCeEEEEcCChhHHHHhCC
Q 028030           95 KPVVVYFYPADETPG--CT--KQACAFRDSYEKFK-KAGAEVIGISGDDSSSHKAFAKKYRLPYTLLSDEGNKVRKEWGV  169 (215)
Q Consensus        95 k~~ll~f~~a~~C~~--C~--~~~~~l~~l~~~~~-~~~v~vv~vs~d~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~g~  169 (215)
                      .++|++|| ++||++  |+  ...|.|.++++++- +.++.|+-|++                     |.+.+++..||+
T Consensus        28 ~~vvv~f~-a~wc~p~~Ck~~~~~p~~~~~aa~~l~~~~v~~~kVD~---------------------d~~~~La~~~~I   85 (120)
T cd03065          28 VLCLLYHE-PVESDKEAQKQFQMEELVLELAAQVLEDKGIGFGLVDS---------------------KKDAKVAKKLGL   85 (120)
T ss_pred             ceEEEEEC-CCcCChhhChhhcchhhHHHHHHHHhhcCCCEEEEEeC---------------------CCCHHHHHHcCC
Confidence            57888888 999988  99  77888999888872 33688888875                     556789999999


Q ss_pred             CccCCCCCCccEEEEEcCCCcEEEEEeCCCC
Q 028030          170 PADFFGSLPGRQTYILDKNGVVQLIYNNQFQ  200 (215)
Q Consensus       170 ~~~~~g~~p~~~~~lid~~G~v~~~~~g~~~  200 (215)
                      .+     +|  +++++ ++|+++. +.|...
T Consensus        86 ~~-----iP--Tl~lf-k~G~~v~-~~G~~~  107 (120)
T cd03065          86 DE-----ED--SIYVF-KDDEVIE-YDGEFA  107 (120)
T ss_pred             cc-----cc--EEEEE-ECCEEEE-eeCCCC
Confidence            98     99  77777 6999887 777543

It stores calcium ions in sufficient quantities (up to 20 mM) to allow repetitive contractions and is essential to maintain movement, respiration and heart beat. A missense mutation in human cardiac calsequestrin is associated with catecholamine-induced polymorphic ventricular tachycardia (CPVT), a rare disease characterized by seizures or sudden death in response to physiologic or emotional stress. Calsequestrin is a highly acidic protein with up to 50 calcium binding sites formed simply by the clustering of two or more acidic residues. The monomer contains three redox inactive TRX-fold domains. Calsequestrin is condensed as a linear polymer in the SR lumen and is membrane-anchored through binding with intra-membrane proteins triadin, junctin and ryanodine receptor (RyR) Ca2

>cd02998 PDI_a_ERp38 PDIa family, endoplasmic reticulum protein 38 (ERp38) subfamily; composed of proteins similar to the P5-like protein first isolated from alfalfa, which contains two redox active TRX (a) domains at the N-terminus, like human P5, and a C-terminal domain with homology to the C-terminal domain of ERp29, unlike human P5

Probab=99.02  E-value=2.3e-09  Score=74.98  Aligned_cols=78  Identities=21%  Similarity=0.370  Sum_probs=62.5

Q ss_pred             CCCcEEEEEEcCCCChhhHHHHHHHHHHHHHHHH-cCcEEEEEeCCCHHHHHHHHHHcCCCeEEEEcCChhHHHHhCCCc
Q 028030           93 KGKPVVVYFYPADETPGCTKQACAFRDSYEKFKK-AGAEVIGISGDDSSSHKAFAKKYRLPYTLLSDEGNKVRKEWGVPA  171 (215)
Q Consensus        93 ~gk~~ll~f~~a~~C~~C~~~~~~l~~l~~~~~~-~~v~vv~vs~d~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~g~~~  171 (215)
                      .+++++|.|| ++||++|+...+.+.++.++++. .++.++.+..+.+                    ...+.+.|++..
T Consensus        17 ~~~~~~v~f~-a~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~id~~~~--------------------~~~~~~~~~i~~   75 (105)
T cd02998          17 DKKDVLVEFY-APWCGHCKNLAPEYEKLAAVFANEDDVVIAKVDADEA--------------------NKDLAKKYGVSG   75 (105)
T ss_pred             CCCcEEEEEE-CCCCHHHHhhChHHHHHHHHhCCCCCEEEEEEECCCc--------------------chhhHHhCCCCC
Confidence            3579999999 99999999999999999999873 3577777765442                    357788888886


Q ss_pred             cCCCCCCccEEEEEcCCCcEEEEEeCC
Q 028030          172 DFFGSLPGRQTYILDKNGVVQLIYNNQ  198 (215)
Q Consensus       172 ~~~g~~p~~~~~lid~~G~v~~~~~g~  198 (215)
                           +|  ++++++++|+....+.|.
T Consensus        76 -----~P--~~~~~~~~~~~~~~~~g~   95 (105)
T cd02998          76 -----FP--TLKFFPKGSTEPVKYEGG   95 (105)
T ss_pred             -----cC--EEEEEeCCCCCccccCCc
Confidence                 88  999998887777677664

The cDNA clone of this protein (named G1) was isolated from an alfalfa cDNA library by screening with human protein disulfide isomerase (PDI) cDNA. The G1 protein is constitutively expressed in all major organs of the plant and its expression is induced by treatment with tunicamycin, indicating that it may be a glucose-regulated protein. The G1 homolog in the eukaryotic social amoeba Dictyostelium discoideum is also described as a P5-like protein, which is located in the endoplasmic reticulum (ER) despite the absence of an ER-retrieval signal. G1 homologs from Aspergillus niger and Neurospora crassa have also been characterized, and are named TIGA and ER

>cd02965 HyaE HyaE family; HyaE is also called HupG and HoxO

Probab=99.02  E-value=2.6e-09  Score=75.79  Aligned_cols=76  Identities=13%  Similarity=0.207  Sum_probs=63.8

Q ss_pred             CCCcEEEEEEcCCC--ChhhHHHHHHHHHHHHHHHHcCcEEEEEeCCCHHHHHHHHHHcCCCeEEEEcCChhHHHHhCCC
Q 028030           93 KGKPVVVYFYPADE--TPGCTKQACAFRDSYEKFKKAGAEVIGISGDDSSSHKAFAKKYRLPYTLLSDEGNKVRKEWGVP  170 (215)
Q Consensus        93 ~gk~~ll~f~~a~~--C~~C~~~~~~l~~l~~~~~~~~v~vv~vs~d~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~g~~  170 (215)
                      .|.++||.|| +.|  |++|....|.|.++.++|+++ +.++-|..                     |.+.+++..|++.
T Consensus        26 ~~~~~v~~f~-~~~~~cp~c~~i~P~leela~e~~~~-v~f~kVdi---------------------d~~~~la~~f~V~   82 (111)
T cd02965          26 AGGDLVLLLA-GDPVRFPEVLDVAVVLPELLKAFPGR-FRAAVVGR---------------------ADEQALAARFGVL   82 (111)
T ss_pred             CCCCEEEEec-CCcccCcchhhhHhHHHHHHHHCCCc-EEEEEEEC---------------------CCCHHHHHHcCCC
Confidence            5789999999 997  999999999999999999865 67777765                     4556889999999


Q ss_pred             ccCCCCCCccEEEEEcCCCcEEEEEeCCC
Q 028030          171 ADFFGSLPGRQTYILDKNGVVQLIYNNQF  199 (215)
Q Consensus       171 ~~~~g~~p~~~~~lid~~G~v~~~~~g~~  199 (215)
                      .     +|  +++++ ++|+++....|..
T Consensus        83 s-----IP--Tli~f-kdGk~v~~~~G~~  103 (111)
T cd02965          83 R-----TP--ALLFF-RDGRYVGVLAGIR  103 (111)
T ss_pred             c-----CC--EEEEE-ECCEEEEEEeCcc
Confidence            8     99  66666 7999999998854

They are proteins serving a critical role in the assembly of multimeric [NiFe] hydrogenases, the enzymes that catalyze the oxidation of molecular hydrogen to enable microorganisms to utilize hydrogen as the sole energy source. The E. coli HyaE protein is a chaperone that specifically interacts with the twin-arginine translocation (Tat) signal peptide of the [NiFe] hydrogenase-1 beta subunit precursor. Tat signal peptides target precursor proteins to the Tat protein export system, which facilitates the transport of fully folded proteins across the inner membrane. HyaE may be involved in regulating the traffic of [NiFe] hydrogenase-1 on the Tat transport pathway.

>PF09695 YtfJ_HI0045: Bacterial protein of unknown function (YtfJ_HI0045); InterPro: IPR006513 These are sequences from gammaproteobacteria that are related to the Escherichia coli protein, YtfJ

Probab=99.00  E-value=1.1e-08  Score=76.06  Aligned_cols=140  Identities=21%  Similarity=0.359  Sum_probs=101.0

Q ss_pred             CCCCCCCCCeEEeC----------CCCCeeecCCcCCCcEEEEEEcCCCChhhHHHHHHHHHHHHH-HHHcCcEEEE-Ee
Q 028030           68 VSKGQAPPSFTLKD----------QEGRNVSLSKFKGKPVVVYFYPADETPGCTKQACAFRDSYEK-FKKAGAEVIG-IS  135 (215)
Q Consensus        68 ~~~g~~~P~f~l~~----------~~g~~~~l~~~~gk~~ll~f~~a~~C~~C~~~~~~l~~l~~~-~~~~~v~vv~-vs  135 (215)
                      ++.|+++|...+.|          .+.+.++..++.||+.+|... |--...-....|-+..+.+. ++....+..+ |+
T Consensus         1 ~~~~~~~p~V~v~d~Gel~l~~~~~~y~~W~s~~l~GKVrviq~i-AGr~sake~N~~l~~aik~a~f~~d~yqtttIiN   79 (160)
T PF09695_consen    1 ITLGQPVPPVTVADKGELILNGDKISYQPWNSAQLPGKVRVIQHI-AGRSSAKEMNAPLIEAIKAAKFPHDKYQTTTIIN   79 (160)
T ss_pred             CcCCCcCCceEecCCceEEEcCCcccccccCccccCCCEEEEEEe-ccCCchhHhhHHHHHHHHHcCCCccceeEEEEEe
Confidence            45788899888765          234556667789999999998 55444444555566666554 6666688887 46


Q ss_pred             CCCH-----HHHHHHHHHcC--CCeE-EEEcCChhHHHHhCCCccCCCCCCccEEEEEcCCCcEEEEEeCCCCCCccHHH
Q 028030          136 GDDS-----SSHKAFAKKYR--LPYT-LLSDEGNKVRKEWGVPADFFGSLPGRQTYILDKNGVVQLIYNNQFQPEKHIDE  207 (215)
Q Consensus       136 ~d~~-----~~~~~~~~~~~--~~~~-~~~d~~~~~~~~~g~~~~~~g~~p~~~~~lid~~G~v~~~~~g~~~~~~~~~~  207 (215)
                      .||+     .-++..+++..  ++|. ++.|.++.+.++|++..+      +..++++|++|+|++...|...+ +.+++
T Consensus        80 ~dDAi~gt~~fVrss~e~~kk~~p~s~~vlD~~G~~~~aW~L~~~------~SaiiVlDK~G~V~F~k~G~Ls~-~Ev~q  152 (160)
T PF09695_consen   80 LDDAIWGTGGFVRSSAEDSKKEFPWSQFVLDSNGVVRKAWQLQEE------SSAIIVLDKQGKVQFVKEGALSP-AEVQQ  152 (160)
T ss_pred             cccccccchHHHHHHHHHhhhhCCCcEEEEcCCCceeccccCCCC------CceEEEEcCCccEEEEECCCCCH-HHHHH
Confidence            7653     34556665443  4554 568999999999999852      33899999999999999997654 56889


Q ss_pred             HHHHHhcC
Q 028030          208 TLKFLQSS  215 (215)
Q Consensus       208 il~~l~~s  215 (215)
                      ++.+|++.
T Consensus       153 Vi~Ll~~n  160 (160)
T PF09695_consen  153 VIALLKKN  160 (160)
T ss_pred             HHHHHhcC
Confidence            99998763

>cd02961 PDI_a_family Protein Disulfide Isomerase (PDIa) family, redox active TRX domains; composed of eukaryotic proteins involved in oxidative protein folding in the endoplasmic reticulum (ER) by acting as catalysts and folding assistants

Probab=98.99  E-value=3.9e-09  Score=72.77  Aligned_cols=77  Identities=21%  Similarity=0.323  Sum_probs=62.3

Q ss_pred             CCCcEEEEEEcCCCChhhHHHHHHHHHHHHHHH-HcCcEEEEEeCCCHHHHHHHHHHcCCCeEEEEcCChhHHHHhCCCc
Q 028030           93 KGKPVVVYFYPADETPGCTKQACAFRDSYEKFK-KAGAEVIGISGDDSSSHKAFAKKYRLPYTLLSDEGNKVRKEWGVPA  171 (215)
Q Consensus        93 ~gk~~ll~f~~a~~C~~C~~~~~~l~~l~~~~~-~~~v~vv~vs~d~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~g~~~  171 (215)
                      ++++++|.|| +.||++|+...+.+.++++.++ +.++.++.|+.+.                     +..+.+.|++..
T Consensus        14 ~~~~~~v~f~-~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~v~~~~---------------------~~~~~~~~~i~~   71 (101)
T cd02961          14 DSKDVLVEFY-APWCGHCKALAPEYEKLAKELKGDGKVVVAKVDCTA---------------------NNDLCSEYGVRG   71 (101)
T ss_pred             CCCcEEEEEE-CCCCHHHHhhhHHHHHHHHHhccCCceEEEEeeccc---------------------hHHHHHhCCCCC
Confidence            4569999999 9999999999999999999885 3458887776433                     457788889986


Q ss_pred             cCCCCCCccEEEEEcCCCcEEEEEeCC
Q 028030          172 DFFGSLPGRQTYILDKNGVVQLIYNNQ  198 (215)
Q Consensus       172 ~~~g~~p~~~~~lid~~G~v~~~~~g~  198 (215)
                           +|  ++++++++|+....+.|.
T Consensus        72 -----~P--t~~~~~~~~~~~~~~~g~   91 (101)
T cd02961          72 -----YP--TIKLFPNGSKEPVKYEGP   91 (101)
T ss_pred             -----CC--EEEEEcCCCcccccCCCC
Confidence                 88  999998887766666664

Members of this family include PDI and PDI-related proteins like ERp72, ERp57 (or ERp60), ERp44, P5, PDIR, ERp46 and the transmembrane PDIs. PDI, ERp57, ERp72, P5, PDIR and ERp46 are all oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. These proteins usually contain multiple copies of a redox active TRX (a) domain containing a CXXC motif, and may also contain one or more redox inactive TRX-like (b) domains. Only one a domain is required for the oxidase function but multiple copies

>cd03001 PDI_a_P5 PDIa family, P5 subfamily; composed of eukaryotic proteins similar to human P5, a PDI-related protein with a domain structure of aa'b (where a and a' are redox active TRX domains and b is a redox inactive TRX-like domain)

Probab=98.96  E-value=4.7e-09  Score=73.36  Aligned_cols=75  Identities=17%  Similarity=0.263  Sum_probs=58.6

Q ss_pred             CCcEEEEEEcCCCChhhHHHHHHHHHHHHHHHHcCcEEEEEeCCCHHHHHHHHHHcCCCeEEEEcCChhHHHHhCCCccC
Q 028030           94 GKPVVVYFYPADETPGCTKQACAFRDSYEKFKKAGAEVIGISGDDSSSHKAFAKKYRLPYTLLSDEGNKVRKEWGVPADF  173 (215)
Q Consensus        94 gk~~ll~f~~a~~C~~C~~~~~~l~~l~~~~~~~~v~vv~vs~d~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~g~~~~~  173 (215)
                      +++++|.|| ++||++|+...+.+.+++++++. .+.++.+..+                     .+..+.+.|++..  
T Consensus        18 ~~~vlv~f~-a~~C~~C~~~~~~~~~~~~~~~~-~~~~~~id~~---------------------~~~~~~~~~~i~~--   72 (103)
T cd03001          18 DDVWLVEFY-APWCGHCKNLAPEWKKAAKALKG-IVKVGAVDAD---------------------VHQSLAQQYGVRG--   72 (103)
T ss_pred             CCcEEEEEE-CCCCHHHHHHhHHHHHHHHHhcC-CceEEEEECc---------------------chHHHHHHCCCCc--
Confidence            467999999 99999999999999999998875 3777777653                     3456778899987  


Q ss_pred             CCCCCccEEEEEcCCCcEEEEEeCC
Q 028030          174 FGSLPGRQTYILDKNGVVQLIYNNQ  198 (215)
Q Consensus       174 ~g~~p~~~~~lid~~G~v~~~~~g~  198 (215)
                         +|  ++++++++.+....+.|.
T Consensus        73 ---~P--~~~~~~~~~~~~~~~~g~   92 (103)
T cd03001          73 ---FP--TIKVFGAGKNSPQDYQGG   92 (103)
T ss_pred             ---cC--EEEEECCCCcceeecCCC
Confidence               89  888887553555556664

Like PDI, P5 is located in the endoplasmic reticulum (ER) and displays both isomerase and chaperone activities, which are independent of each other. Compared to PDI, the isomerase and chaperone activities of P5 are lower. The first cysteine in the CXXC motif of both redox active domains in P5 is necessary for isomerase activity. The P5 gene was first isolated as an amplified gene from a hydroxyurea-resistant hamster cell line. The zebrafish P5 homolog has been implicated to play a critical role in establishing left/right asymmetries in the embryonic midline. Some members of this subfamily are P5-like proteins containing only one redox active TRX domain.

>cd02955 SSP411 TRX domain, SSP411 protein family; members of this family are highly conserved proteins present in eukaryotes, bacteria and archaea, about 600-800 amino acids in length, which contain a TRX domain with a redox active CXXC motif

Probab=98.93  E-value=2.9e-08  Score=72.15  Aligned_cols=99  Identities=8%  Similarity=0.031  Sum_probs=63.9

Q ss_pred             CCCcEEEEEEcCCCChhhHHHHHHH---HHHHHHHHHcCcEEEEEeCCCHHHHH-HHHHHcCCCeEEEEcCChhHHHHhC
Q 028030           93 KGKPVVVYFYPADETPGCTKQACAF---RDSYEKFKKAGAEVIGISGDDSSSHK-AFAKKYRLPYTLLSDEGNKVRKEWG  168 (215)
Q Consensus        93 ~gk~~ll~f~~a~~C~~C~~~~~~l---~~l~~~~~~~~v~vv~vs~d~~~~~~-~~~~~~~~~~~~~~d~~~~~~~~~g  168 (215)
                      .||+++|+|+ ++||++|+...+..   .++.+.+. +++.+|-|..+...++. .+.+              .....||
T Consensus        14 ~~KpVll~f~-a~WC~~Ck~me~~~f~~~~V~~~l~-~~fv~VkvD~~~~~~~~~~~~~--------------~~~~~~~   77 (124)
T cd02955          14 EDKPIFLSIG-YSTCHWCHVMEHESFEDEEVAAILN-ENFVPIKVDREERPDVDKIYMN--------------AAQAMTG   77 (124)
T ss_pred             cCCeEEEEEc-cCCCHhHHHHHHHccCCHHHHHHHh-CCEEEEEEeCCcCcHHHHHHHH--------------HHHHhcC
Confidence            5899999999 99999999776532   23444443 35777777665432222 1221              1122456


Q ss_pred             CCccCCCCCCccEEEEEcCCCcEEEEEeCC----CCCCccHHHHHHHHhc
Q 028030          169 VPADFFGSLPGRQTYILDKNGVVQLIYNNQ----FQPEKHIDETLKFLQS  214 (215)
Q Consensus       169 ~~~~~~g~~p~~~~~lid~~G~v~~~~~g~----~~~~~~~~~il~~l~~  214 (215)
                      +.+     +|  +++++|++|+++....+-    ...+..+.++++.|++
T Consensus        78 ~~G-----~P--t~vfl~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  120 (124)
T cd02955          78 QGG-----WP--LNVFLTPDLKPFFGGTYFPPEDRYGRPGFKTVLEKIRE  120 (124)
T ss_pred             CCC-----CC--EEEEECCCCCEEeeeeecCCCCcCCCcCHHHHHHHHHH
Confidence            665     89  999999999999876442    1233566777777664

The human/rat protein, called SSP411, is specifically expressed in the testis in an age-dependent manner. The SSP411 mRNA is increased during spermiogenesis and is localized in round and elongated spermatids, suggesting a function in fertility regulation.

>PRK00293 dipZ thiol:disulfide interchange protein precursor; Provisional

Probab=98.93  E-value=5e-09  Score=94.65  Aligned_cols=83  Identities=20%  Similarity=0.257  Sum_probs=62.0

Q ss_pred             CCcCCCcEEEEEEcCCCChhhHHHHHHH---HHHHHHHHHcCcEEEEEeCCCHHHHHHHHHHcCCCeEEEEcCChhHHHH
Q 028030           90 SKFKGKPVVVYFYPADETPGCTKQACAF---RDSYEKFKKAGAEVIGISGDDSSSHKAFAKKYRLPYTLLSDEGNKVRKE  166 (215)
Q Consensus        90 ~~~~gk~~ll~f~~a~~C~~C~~~~~~l---~~l~~~~~~~~v~vv~vs~d~~~~~~~~~~~~~~~~~~~~d~~~~~~~~  166 (215)
                      ++.+||+++|+|| ++||++|+...+.+   .++.++++  ++.++.++.++.+                 +++.++.++
T Consensus       470 a~~~gK~VlVdF~-A~WC~~Ck~~e~~~~~~~~v~~~l~--~~~~v~vDvt~~~-----------------~~~~~l~~~  529 (571)
T PRK00293        470 AKGKGKPVMLDLY-ADWCVACKEFEKYTFSDPQVQQALA--DTVLLQADVTANN-----------------AEDVALLKH  529 (571)
T ss_pred             HHhcCCcEEEEEE-CCcCHhHHHHHHHhcCCHHHHHHhc--CCEEEEEECCCCC-----------------hhhHHHHHH
Confidence            3346899999999 99999999876654   55666664  5888888775432                 123567778


Q ss_pred             hCCCccCCCCCCccEEEEEcCCCcEE--EEEeCCC
Q 028030          167 WGVPADFFGSLPGRQTYILDKNGVVQ--LIYNNQF  199 (215)
Q Consensus       167 ~g~~~~~~g~~p~~~~~lid~~G~v~--~~~~g~~  199 (215)
                      |++.+     +|  +++++|+||+++  .++.|..
T Consensus       530 ~~v~g-----~P--t~~~~~~~G~~i~~~r~~G~~  557 (571)
T PRK00293        530 YNVLG-----LP--TILFFDAQGQEIPDARVTGFM  557 (571)
T ss_pred             cCCCC-----CC--EEEEECCCCCCcccccccCCC
Confidence            88887     89  999999999985  5666754

>cd02957 Phd_like Phosducin (Phd)-like family; composed of Phd and Phd-like proteins (PhLP), characterized as cytosolic regulators of G protein functions

Probab=98.92  E-value=7.6e-09  Score=74.01  Aligned_cols=72  Identities=21%  Similarity=0.323  Sum_probs=58.4

Q ss_pred             CCcEEEEEEcCCCChhhHHHHHHHHHHHHHHHHcCcEEEEEeCCCHHHHHHHHHHcCCCeEEEEcCChhHHHHhCCCccC
Q 028030           94 GKPVVVYFYPADETPGCTKQACAFRDSYEKFKKAGAEVIGISGDDSSSHKAFAKKYRLPYTLLSDEGNKVRKEWGVPADF  173 (215)
Q Consensus        94 gk~~ll~f~~a~~C~~C~~~~~~l~~l~~~~~~~~v~vv~vs~d~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~g~~~~~  173 (215)
                      +++++|.|| ++||++|+...|.|++++++++  ++.++-|..+                     .. .+...|++..  
T Consensus        24 ~~~vvv~F~-a~~c~~C~~l~~~l~~la~~~~--~v~f~~vd~~---------------------~~-~l~~~~~i~~--   76 (113)
T cd02957          24 GTRVVVHFY-EPGFPRCKILDSHLEELAAKYP--ETKFVKINAE---------------------KA-FLVNYLDIKV--   76 (113)
T ss_pred             CCEEEEEEe-CCCCCcHHHHHHHHHHHHHHCC--CcEEEEEEch---------------------hh-HHHHhcCCCc--
Confidence            589999999 9999999999999999999886  4777777542                     23 6777888886  


Q ss_pred             CCCCCccEEEEEcCCCcEEEEEeCC
Q 028030          174 FGSLPGRQTYILDKNGVVQLIYNNQ  198 (215)
Q Consensus       174 ~g~~p~~~~~lid~~G~v~~~~~g~  198 (215)
                         +|  +++++ ++|+++....|.
T Consensus        77 ---~P--t~~~f-~~G~~v~~~~G~   95 (113)
T cd02957          77 ---LP--TLLVY-KNGELIDNIVGF   95 (113)
T ss_pred             ---CC--EEEEE-ECCEEEEEEecH
Confidence               99  66555 799999988773

Phd and PhLPs specifically bind G protein betagamma (Gbg)-subunits with high affinity, resulting in the solubilization of Gbg from the plasma membrane and impeding G protein-mediated signal transduction by inhibiting the formation of a functional G protein trimer (G protein alphabetagamma). Phd also inhibits the GTPase activity of G protein alpha. Phd can be phosphorylated by protein kinase A and G protein-coupled receptor kinase 2, leading to its inactivation. Phd was originally isolated from the retina, where it is highly expressed and has been implicated to play an important role in light adaptation. It is also found in the pineal gland, liver, spleen, striated muscle and the brain. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-te

>cd02975 PfPDO_like_N Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO)-like family, N-terminal TRX-fold subdomain; composed of proteins with similarity to PfPDO, a redox active thermostable protein believed to be the archaeal counterpart of bacterial DsbA and eukaryotic protein disulfide isomerase (PDI), which are both involved in oxidative protein folding

Probab=98.90  E-value=1.6e-08  Score=72.45  Aligned_cols=87  Identities=15%  Similarity=0.141  Sum_probs=59.5

Q ss_pred             CCcEEEEEEcCCCChhhHHHHHHHHHHHHHHHHcCcEEEEEeCCCHHHHHHHHHHcCCCeEEEEcCChhHHHHhCCCccC
Q 028030           94 GKPVVVYFYPADETPGCTKQACAFRDSYEKFKKAGAEVIGISGDDSSSHKAFAKKYRLPYTLLSDEGNKVRKEWGVPADF  173 (215)
Q Consensus        94 gk~~ll~f~~a~~C~~C~~~~~~l~~l~~~~~~~~v~vv~vs~d~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~g~~~~~  173 (215)
                      ++.++|+|| ++||++|+...+.+.++.++++  .++++.|..|                     ...++...|++..  
T Consensus        22 ~~~vvv~f~-a~wC~~C~~~~~~l~~la~~~~--~i~~~~vd~d---------------------~~~~l~~~~~v~~--   75 (113)
T cd02975          22 PVDLVVFSS-KEGCQYCEVTKQLLEELSELSD--KLKLEIYDFD---------------------EDKEKAEKYGVER--   75 (113)
T ss_pred             CeEEEEEeC-CCCCCChHHHHHHHHHHHHhcC--ceEEEEEeCC---------------------cCHHHHHHcCCCc--
Confidence            455777778 9999999999999999988762  4777777754                     3456888999987  


Q ss_pred             CCCCCccEEEEEcCCCcEEE-EEeCCCCCCccHHHHHHHH
Q 028030          174 FGSLPGRQTYILDKNGVVQL-IYNNQFQPEKHIDETLKFL  212 (215)
Q Consensus       174 ~g~~p~~~~~lid~~G~v~~-~~~g~~~~~~~~~~il~~l  212 (215)
                         +|  ++++++.+|+... .+.|. .....+.+++..|
T Consensus        76 ---vP--t~~i~~~g~~~~~~~~~G~-~~~~el~~~i~~i  109 (113)
T cd02975          76 ---VP--TTIFLQDGGKDGGIRYYGL-PAGYEFASLIEDI  109 (113)
T ss_pred             ---CC--EEEEEeCCeecceEEEEec-CchHHHHHHHHHH
Confidence               89  7887764332211 45563 2334444454443

PfPDO contains two redox active CXXC motifs in two contiguous TRX-fold subdomains. The active site in the N-terminal TRX-fold subdomain is required for isomerase but not for reductase activity of PfPDO. The exclusive presence of PfPDO-like proteins in extremophiles may suggest that they have a special role in adaptation to extreme conditions.

>cd02992 PDI_a_QSOX PDIa family, Quiescin-sulfhydryl oxidase (QSOX) subfamily; QSOX is a eukaryotic protein containing an N-terminal redox active TRX domain, similar to that of PDI, and a small C-terminal flavin adenine dinucleotide (FAD)-binding domain homologous to the yeast ERV1p protein

Probab=98.89  E-value=2.7e-08  Score=71.32  Aligned_cols=69  Identities=19%  Similarity=0.272  Sum_probs=52.5

Q ss_pred             CCcEEEEEEcCCCChhhHHHHHHHHHHHHHHHHc--CcEEEEEeCCCHHHHHHHHHHcCCCeEEEEcCChhHHHHhCCCc
Q 028030           94 GKPVVVYFYPADETPGCTKQACAFRDSYEKFKKA--GAEVIGISGDDSSSHKAFAKKYRLPYTLLSDEGNKVRKEWGVPA  171 (215)
Q Consensus        94 gk~~ll~f~~a~~C~~C~~~~~~l~~l~~~~~~~--~v~vv~vs~d~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~g~~~  171 (215)
                      +++++|.|| ++||++|+...+.++++++++++.  .+.+..|+.+.                   +....+.+.|++..
T Consensus        19 ~~~vvV~f~-a~wC~~C~~~~~~~~~la~~~~~~~~~v~~~~vd~~~-------------------~~~~~~~~~~~i~~   78 (114)
T cd02992          19 PSAWLVEFY-ASWCGHCRAFAPTWKKLARDLRKWRPVVRVAAVDCAD-------------------EENVALCRDFGVTG   78 (114)
T ss_pred             CCeEEEEEE-CCCCHHHHHHhHHHHHHHHHHHhcCCceEEEEEeccc-------------------hhhHHHHHhCCCCC
Confidence            479999999 999999999999999999988753  25555565432                   12346778888887


Q ss_pred             cCCCCCCccEEEEEcCCC
Q 028030          172 DFFGSLPGRQTYILDKNG  189 (215)
Q Consensus       172 ~~~g~~p~~~~~lid~~G  189 (215)
                           +|  +++++.++.
T Consensus        79 -----~P--t~~lf~~~~   89 (114)
T cd02992          79 -----YP--TLRYFPPFS   89 (114)
T ss_pred             -----CC--EEEEECCCC
Confidence                 89  888885444

QSOX oxidizes thiol groups to disulfides like PDI, however, unlike PDI, this oxidation is accompanied by the reduction of oxygen to hydrogen peroxide. QSOX is localized in high concentrations in cells with heavy secretory load and prefers peptides and proteins as substrates, not monothiols like glutathione. Inside the cell, QSOX is found in the endoplasmic reticulum and Golgi. The flow of reducing equivalents in a QSOX-catalyzed reaction goes from the dithiol substrate - dithiol of the QSOX TRX domain - dithiols of the QSOX ERV1p domain - FAD - oxygen.

>cd02989 Phd_like_TxnDC9 Phosducin (Phd)-like family, Thioredoxin (TRX) domain containing protein 9 (TxnDC9) subfamily; composed of predominantly uncharacterized eukaryotic proteins, containing a TRX-like domain without the redox active CXXC motif

Probab=98.88  E-value=1.8e-08  Score=72.16  Aligned_cols=74  Identities=18%  Similarity=0.201  Sum_probs=60.9

Q ss_pred             CCCcEEEEEEcCCCChhhHHHHHHHHHHHHHHHHcCcEEEEEeCCCHHHHHHHHHHcCCCeEEEEcCChhHHHHhCCCcc
Q 028030           93 KGKPVVVYFYPADETPGCTKQACAFRDSYEKFKKAGAEVIGISGDDSSSHKAFAKKYRLPYTLLSDEGNKVRKEWGVPAD  172 (215)
Q Consensus        93 ~gk~~ll~f~~a~~C~~C~~~~~~l~~l~~~~~~~~v~vv~vs~d~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~g~~~~  172 (215)
                      .+++++|.|| ++||++|+...|.|.++.++++  ++.++-|..                     |....+.+.|++.. 
T Consensus        21 ~~~~vvV~f~-a~~c~~C~~~~p~l~~la~~~~--~i~f~~Vd~---------------------~~~~~l~~~~~v~~-   75 (113)
T cd02989          21 SSERVVCHFY-HPEFFRCKIMDKHLEILAKKHL--ETKFIKVNA---------------------EKAPFLVEKLNIKV-   75 (113)
T ss_pred             CCCcEEEEEE-CCCCccHHHHHHHHHHHHHHcC--CCEEEEEEc---------------------ccCHHHHHHCCCcc-
Confidence            3579999999 9999999999999999998886  478877765                     44556888999997 


Q ss_pred             CCCCCCccEEEEEcCCCcEEEEEeCC
Q 028030          173 FFGSLPGRQTYILDKNGVVQLIYNNQ  198 (215)
Q Consensus       173 ~~g~~p~~~~~lid~~G~v~~~~~g~  198 (215)
                          +|  +++++ ++|+++.+..|.
T Consensus        76 ----vP--t~l~f-k~G~~v~~~~g~   94 (113)
T cd02989          76 ----LP--TVILF-KNGKTVDRIVGF   94 (113)
T ss_pred             ----CC--EEEEE-ECCEEEEEEECc
Confidence                99  66555 699999887664

The gene name for the human protein is TxnDC9. The two characterized members are described as Phd-like proteins, PLP1 of Saccharomyces cerevisiae and PhLP3 of Dictyostelium discoideum. Gene disruption experiments show that both PLP1 and PhLP3 are non-essential proteins. Unlike Phd and most Phd-like proteins, members of this group do not contain the Phd N-terminal helical domain which is implicated in binding to the G protein betagamma subunit.

>cd02947 TRX_family TRX family; composed of two groups: Group I, which includes proteins that exclusively encode a TRX domain; and Group II, which are composed of fusion proteins of TRX and additional domains

Probab=98.84  E-value=7.1e-08  Score=65.09  Aligned_cols=73  Identities=25%  Similarity=0.354  Sum_probs=58.9

Q ss_pred             CCcEEEEEEcCCCChhhHHHHHHHHHHHHHHHHcCcEEEEEeCCCHHHHHHHHHHcCCCeEEEEcCChhHHHHhCCCccC
Q 028030           94 GKPVVVYFYPADETPGCTKQACAFRDSYEKFKKAGAEVIGISGDDSSSHKAFAKKYRLPYTLLSDEGNKVRKEWGVPADF  173 (215)
Q Consensus        94 gk~~ll~f~~a~~C~~C~~~~~~l~~l~~~~~~~~v~vv~vs~d~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~g~~~~~  173 (215)
                      +++++|.|| +.||+.|....+.++++.++  ..++.++.++.+.                     ..++...|++..  
T Consensus        10 ~~~~ll~~~-~~~C~~C~~~~~~~~~~~~~--~~~~~~~~i~~~~---------------------~~~~~~~~~v~~--   63 (93)
T cd02947          10 AKPVVVDFW-APWCGPCKAIAPVLEELAEE--YPKVKFVKVDVDE---------------------NPELAEEYGVRS--   63 (93)
T ss_pred             CCcEEEEEE-CCCChhHHHhhHHHHHHHHH--CCCceEEEEECCC---------------------ChhHHHhcCccc--
Confidence            388999999 99999999999999999877  3468888887643                     456677888876  


Q ss_pred             CCCCCccEEEEEcCCCcEEEEEeCC
Q 028030          174 FGSLPGRQTYILDKNGVVQLIYNNQ  198 (215)
Q Consensus       174 ~g~~p~~~~~lid~~G~v~~~~~g~  198 (215)
                         +|  +++++ ++|+++..+.|.
T Consensus        64 ---~P--~~~~~-~~g~~~~~~~g~   82 (93)
T cd02947          64 ---IP--TFLFF-KNGKEVDRVVGA   82 (93)
T ss_pred             ---cc--EEEEE-ECCEEEEEEecC
Confidence               88  77766 578888888774

Group I TRX is a small ancient protein that alter the redox state of target proteins via the reversible oxidation of an active site dithiol, present in a CXXC motif, partially exposed at the protein's surface. TRX reduces protein disulfide bonds, resulting in a disulfide bond at its active site. Oxidized TRX is converted to the active form by TRX reductase, using reducing equivalents derived from either NADPH or ferredoxins. By altering their redox state, TRX regulates the functions of at least 30 target proteins, some of which are enzymes and transcription factors. It also plays an important role in the defense against oxidative stress by directly reducing hydrogen peroxide and certain radicals, and by serving as a reductant for peroxiredoxins. At least two major types of functio

>PTZ00102 disulphide isomerase; Provisional

Probab=98.81  E-value=2.7e-08  Score=88.04  Aligned_cols=102  Identities=17%  Similarity=0.239  Sum_probs=70.9

Q ss_pred             EeCCCCCeeecC-CcCCCcEEEEEEcCCCChhhHHHHHHHHHHHHHHHHc-CcEEEEEeCCCHHHHHHHHHHcCCCeEEE
Q 028030           79 LKDQEGRNVSLS-KFKGKPVVVYFYPADETPGCTKQACAFRDSYEKFKKA-GAEVIGISGDDSSSHKAFAKKYRLPYTLL  156 (215)
Q Consensus        79 l~~~~g~~~~l~-~~~gk~~ll~f~~a~~C~~C~~~~~~l~~l~~~~~~~-~v~vv~vs~d~~~~~~~~~~~~~~~~~~~  156 (215)
                      +....|+.+.-. .-.||.+||+|| ++||++|+...|.+.++++++++. .+.+..+..+.                  
T Consensus       359 v~~l~~~~f~~~v~~~~k~vlv~f~-a~wC~~C~~~~p~~~~~a~~~~~~~~v~~~~id~~~------------------  419 (477)
T PTZ00102        359 VKVVVGNTFEEIVFKSDKDVLLEIY-APWCGHCKNLEPVYNELGEKYKDNDSIIVAKMNGTA------------------  419 (477)
T ss_pred             eEEecccchHHHHhcCCCCEEEEEE-CCCCHHHHHHHHHHHHHHHHhccCCcEEEEEEECCC------------------
Confidence            444455544322 125799999999 999999999999999999988764 35555565432                  


Q ss_pred             EcCChhHHHHhCCCccCCCCCCccEEEEEcCCCcEEEEEeCCCCCCccHHHHHHHHh
Q 028030          157 SDEGNKVRKEWGVPADFFGSLPGRQTYILDKNGVVQLIYNNQFQPEKHIDETLKFLQ  213 (215)
Q Consensus       157 ~d~~~~~~~~~g~~~~~~g~~p~~~~~lid~~G~v~~~~~g~~~~~~~~~~il~~l~  213 (215)
                         +......|++.+     +|  ++++++++|++...+.|..    ..+++.+.|+
T Consensus       420 ---~~~~~~~~~v~~-----~P--t~~~~~~~~~~~~~~~G~~----~~~~l~~~i~  462 (477)
T PTZ00102        420 ---NETPLEEFSWSA-----FP--TILFVKAGERTPIPYEGER----TVEGFKEFVN  462 (477)
T ss_pred             ---CccchhcCCCcc-----cC--eEEEEECCCcceeEecCcC----CHHHHHHHHH
Confidence               233456778876     89  9999998888766777753    3344444443

>cd02995 PDI_a_PDI_a'_C PDIa family, C-terminal TRX domain (a') subfamily; composed of the C-terminal redox active a' domains of PDI, ERp72, ERp57 (or ERp60) and EFP1

Probab=98.80  E-value=5.5e-08  Score=67.89  Aligned_cols=84  Identities=23%  Similarity=0.387  Sum_probs=57.9

Q ss_pred             CCcEEEEEEcCCCChhhHHHHHHHHHHHHHHHH-cCcEEEEEeCCCHHHHHHHHHHcCCCeEEEEcCChhHHHHhCCCcc
Q 028030           94 GKPVVVYFYPADETPGCTKQACAFRDSYEKFKK-AGAEVIGISGDDSSSHKAFAKKYRLPYTLLSDEGNKVRKEWGVPAD  172 (215)
Q Consensus        94 gk~~ll~f~~a~~C~~C~~~~~~l~~l~~~~~~-~~v~vv~vs~d~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~g~~~~  172 (215)
                      ++.++|+|| ++||++|+...+.+.++++.+++ ..+.+..|+.+.                      .++...+++.. 
T Consensus        18 ~~~~~v~f~-~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~id~~~----------------------~~~~~~~~~~~-   73 (104)
T cd02995          18 DKDVLVEFY-APWCGHCKALAPIYEELAEKLKGDDNVVIAKMDATA----------------------NDVPSEFVVDG-   73 (104)
T ss_pred             CCcEEEEEE-CCCCHHHHHHhhHHHHHHHHhcCCCCEEEEEEeCcc----------------------hhhhhhccCCC-
Confidence            589999999 99999999999999999999876 346666676532                      13445566654 


Q ss_pred             CCCCCCccEEEEEcCCCc-EEEEEeCCCCCCccHHHHHHH
Q 028030          173 FFGSLPGRQTYILDKNGV-VQLIYNNQFQPEKHIDETLKF  211 (215)
Q Consensus       173 ~~g~~p~~~~~lid~~G~-v~~~~~g~~~~~~~~~~il~~  211 (215)
                          +|  +++++.++++ -...+.|.    ...+++++.
T Consensus        74 ----~P--t~~~~~~~~~~~~~~~~g~----~~~~~l~~f  103 (104)
T cd02995          74 ----FP--TILFFPAGDKSNPIKYEGD----RTLEDLIKF  103 (104)
T ss_pred             ----CC--EEEEEcCCCcCCceEccCC----cCHHHHHhh
Confidence                88  7777755441 23345553    344555543

PDI, ERp72 and ERp57 are endoplasmic reticulum (ER)-resident eukaryotic proteins involved in oxidative protein folding. They are oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. PDI and ERp57 have the abb'a' domain structure (where a and a' are redox active TRX domains while b and b' are redox inactive TRX-like domains). PDI also contains an acidic region (c domain) after the a' domain that is absent in ERp57. ERp72 has an additional a domain at the N-terminus (a"abb'a' domain structure). ERp57 interacts with the lectin chaperones, calnexin and calreticu

>PF05988 DUF899: Bacterial protein of unknown function (DUF899); InterPro: IPR010296 This family consists of uncharacterised bacterial proteins of unknown function which are thioredoxin-like

Probab=98.79  E-value=3.5e-07  Score=71.38  Aligned_cols=128  Identities=19%  Similarity=0.359  Sum_probs=102.0

Q ss_pred             CCCCCCCCCeEEeCCCCCeeecCCc-CCCcEEEEEEc------CCCChhhHHHHHHHHHHHHHHHHcCcEEEEEeCCCHH
Q 028030           68 VSKGQAPPSFTLKDQEGRNVSLSKF-KGKPVVVYFYP------ADETPGCTKQACAFRDSYEKFKKAGAEVIGISGDDSS  140 (215)
Q Consensus        68 ~~~g~~~P~f~l~~~~g~~~~l~~~-~gk~~ll~f~~------a~~C~~C~~~~~~l~~l~~~~~~~~v~vv~vs~d~~~  140 (215)
                      +..+..-.++.+...+|+ ++|.|+ .||-.||+...      ...|+.|...+..+......+..+++.++.||-...+
T Consensus        40 LP~v~v~~~Y~F~g~~G~-v~L~dLF~Gr~qLivyhfM~~p~~~~~C~gCs~~~D~~~g~l~hL~~rd~tfa~vSraP~~  118 (211)
T PF05988_consen   40 LPMVEVDKDYVFDGPDGP-VSLADLFEGRRQLIVYHFMFGPDWDEGCPGCSFWADHIDGALRHLHARDTTFAVVSRAPLE  118 (211)
T ss_pred             CCCccCCCCeEEeCCCCc-ccHHHHcCCCceEEEEeeccCCCCCCCCCchhhhHhhhhhhHHHHHhCCceEEEEeCCCHH
Confidence            344455556888889998 899996 78754444321      3569999999999977778889889999999999999


Q ss_pred             HHHHHHHHcCCCeEEEEcCChhHHHHhCCCccCCCCCCccEEEEEcCCCcEEEEEeC
Q 028030          141 SHKAFAKKYRLPYTLLSDEGNKVRKEWGVPADFFGSLPGRQTYILDKNGVVQLIYNN  197 (215)
Q Consensus       141 ~~~~~~~~~~~~~~~~~d~~~~~~~~~g~~~~~~g~~p~~~~~lid~~G~v~~~~~g  197 (215)
                      ++..|.+..|+.+|.++..+..+-..|++.....+..|.-.+|+-|. |+|...|..
T Consensus       119 ~i~afk~rmGW~~pw~Ss~gs~Fn~D~~~~~~~~~~~~g~svF~Rdg-~~VfhTyst  174 (211)
T PF05988_consen  119 KIEAFKRRMGWTFPWYSSYGSDFNYDFGVSFDEGGEMPGLSVFLRDG-GRVFHTYST  174 (211)
T ss_pred             HHHHHHHhcCCCceEEEcCCCcccccccceeccCCCceeEEEEEEcC-CEEEEEeec
Confidence            99999999999999999888888888998654334467666777775 888887754

>TIGR00424 APS_reduc 5'-adenylylsulfate reductase, thioredoxin-independent

Probab=98.76  E-value=4.6e-08  Score=85.64  Aligned_cols=91  Identities=18%  Similarity=0.374  Sum_probs=65.0

Q ss_pred             CCCcEEEEEEcCCCChhhHHHHHHHHHHHHHHHHcCcEEEEEeCCCHHHHHHHHHHcCCCeEEEEcCChhHHHHhCCCcc
Q 028030           93 KGKPVVVYFYPADETPGCTKQACAFRDSYEKFKKAGAEVIGISGDDSSSHKAFAKKYRLPYTLLSDEGNKVRKEWGVPAD  172 (215)
Q Consensus        93 ~gk~~ll~f~~a~~C~~C~~~~~~l~~l~~~~~~~~v~vv~vs~d~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~g~~~~  172 (215)
                      +++++||+|| ++||++|+...|.+.++++++++.++.|+.|..|..+                   .......|++.. 
T Consensus       370 ~~k~VLV~Fy-ApWC~~Ck~m~P~~eelA~~~~~~~v~~~kVdvD~~~-------------------~~~~~~~~~I~~-  428 (463)
T TIGR00424       370 RKEAWLVVLY-APWCPFCQAMEASYLELAEKLAGSGVKVAKFRADGDQ-------------------KEFAKQELQLGS-  428 (463)
T ss_pred             CCCeEEEEEE-CCCChHHHHHHHHHHHHHHHhccCCcEEEEEECCCCc-------------------cHHHHHHcCCCc-
Confidence            5789999999 9999999999999999999998777888888775321                   112235688886 


Q ss_pred             CCCCCCccEEEEEcCCCcEEEEEeCCCCCCccHHHHHHHHh
Q 028030          173 FFGSLPGRQTYILDKNGVVQLIYNNQFQPEKHIDETLKFLQ  213 (215)
Q Consensus       173 ~~g~~p~~~~~lid~~G~v~~~~~g~~~~~~~~~~il~~l~  213 (215)
                          +|  +++++.+++.-...|.+.   ..+.+.+++.++
T Consensus       429 ----~P--Tii~Fk~g~~~~~~Y~~g---~R~~e~L~~Fv~  460 (463)
T TIGR00424       429 ----FP--TILFFPKHSSRPIKYPSE---KRDVDSLMSFVN  460 (463)
T ss_pred             ----cc--eEEEEECCCCCceeCCCC---CCCHHHHHHHHH
Confidence                89  777775443222234331   355666776665

This enzyme, involved in the assimilation of inorganic sulfate, is closely related to the thioredoxin-dependent PAPS reductase of Bacteria (CysH) and Saccharomyces cerevisiae. However, it has its own C-terminal thioredoxin-like domain and is not thioredoxin-dependent. Also, it has a substrate preference for 5'-adenylylsulfate (APS) over 3'-phosphoadenylylsulfate (PAPS) so the pathway does not require an APS kinase (CysC) to convert APS to PAPS. Arabidopsis thaliana appears to have three isozymes, all able to complement E. coli CysH mutants (even in backgrounds lacking thioredoxin or APS kinase) but likely localized to different compartments in Arabidopsis.

>cd02958 UAS UAS family; UAS is a domain of unknown function

Probab=98.75  E-value=1.7e-07  Score=67.02  Aligned_cols=93  Identities=18%  Similarity=0.299  Sum_probs=64.4

Q ss_pred             cCCCcEEEEEEcCCCChhhHHHHHHH---HHHHHHHHHcCcEEEEEeCCCHHHHHHHHHHcCCCeEEEEcCChhHHHHhC
Q 028030           92 FKGKPVVVYFYPADETPGCTKQACAF---RDSYEKFKKAGAEVIGISGDDSSSHKAFAKKYRLPYTLLSDEGNKVRKEWG  168 (215)
Q Consensus        92 ~~gk~~ll~f~~a~~C~~C~~~~~~l---~~l~~~~~~~~v~vv~vs~d~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~g  168 (215)
                      -++|+++|+|+ ++||++|......+   .++.+.+.+ ++.++.+..++++                   ..++...|+
T Consensus        15 ~~~K~llv~~~-~~~c~~c~~~~~~vl~~~~v~~~l~~-~~v~~~~d~~~~e-------------------~~~~~~~~~   73 (114)
T cd02958          15 SEKKWLLVYLQ-SEDEFDSQVLNRDLWSNESVKEFIRE-NFIFWQCDIDSSE-------------------GQRFLQSYK   73 (114)
T ss_pred             hhCceEEEEEe-cCCcchHHHHHHHHcCCHHHHHHHHh-CEEEEEecCCCcc-------------------HHHHHHHhC
Confidence            35899999999 99999998765543   224344433 4555566554432                   234566777


Q ss_pred             CCccCCCCCCccEEEEEcC-CCcEEEEEeCCCCCCccHHHHHHHH
Q 028030          169 VPADFFGSLPGRQTYILDK-NGVVQLIYNNQFQPEKHIDETLKFL  212 (215)
Q Consensus       169 ~~~~~~g~~p~~~~~lid~-~G~v~~~~~g~~~~~~~~~~il~~l  212 (215)
                      +..     +|  .++++|+ +|+++....|...++..+..+.+.+
T Consensus        74 ~~~-----~P--~~~~i~~~~g~~l~~~~G~~~~~~f~~~L~~~~  111 (114)
T cd02958          74 VDK-----YP--HIAIIDPRTGEVLKVWSGNITPEDLLSQLIEFL  111 (114)
T ss_pred             ccC-----CC--eEEEEeCccCcEeEEEcCCCCHHHHHHHHHHHH
Confidence            776     89  9999999 8999999999776655555444444

Most members of this family are uncharacterized proteins with similarity to FAS-associated factor 1 (FAF1) and ETEA because of the presence of a UAS domain N-terminal to a ubiquitin-associated UBX domain. FAF1 is a longer protein, compared to the other members of this family, having additional N-terminal domains, a ubiquitin-associated UBA domain and a nuclear targeting domain. FAF1 is an apoptotic signaling molecule that acts downstream in the Fas signal transduction pathway. It interacts with the cytoplasmic domain of Fas, but not to a Fas mutant that is deficient in signal transduction. ETEA is the protein product of a highly expressed gene in T-cells and eosinophils of atopic dermatitis patients. The presence of the ubiquitin-associated UBX domain in the proteins of this family suggests the possibility of their involvement in ubiquitination. Recently, FAF1 has been shown to interact with valosin-containing protein (VCP),

>cd02987 Phd_like_Phd Phosducin (Phd)-like family, Phd subfamily; Phd is a cytosolic regulator of G protein functions

Probab=98.75  E-value=9.6e-08  Score=73.66  Aligned_cols=72  Identities=19%  Similarity=0.305  Sum_probs=58.2

Q ss_pred             CCcEEEEEEcCCCChhhHHHHHHHHHHHHHHHHcCcEEEEEeCCCHHHHHHHHHHcCCCeEEEEcCChhHHHHhCCCccC
Q 028030           94 GKPVVVYFYPADETPGCTKQACAFRDSYEKFKKAGAEVIGISGDDSSSHKAFAKKYRLPYTLLSDEGNKVRKEWGVPADF  173 (215)
Q Consensus        94 gk~~ll~f~~a~~C~~C~~~~~~l~~l~~~~~~~~v~vv~vs~d~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~g~~~~~  173 (215)
                      ++++||.|| ++||++|+...+.|.+++.+|.  ++.|+-|..+.                     . .+...|++..  
T Consensus        83 ~~~VVV~Fy-a~wc~~Ck~m~~~l~~LA~~~~--~vkF~kVd~d~---------------------~-~l~~~f~v~~--  135 (175)
T cd02987          83 DTTVVVHIY-EPGIPGCAALNSSLLCLAAEYP--AVKFCKIRASA---------------------T-GASDEFDTDA--  135 (175)
T ss_pred             CcEEEEEEE-CCCCchHHHHHHHHHHHHHHCC--CeEEEEEeccc---------------------h-hhHHhCCCCC--
Confidence            358999999 9999999999999999999986  48888887542                     2 5667788876  


Q ss_pred             CCCCCccEEEEEcCCCcEEEEEeCC
Q 028030          174 FGSLPGRQTYILDKNGVVQLIYNNQ  198 (215)
Q Consensus       174 ~g~~p~~~~~lid~~G~v~~~~~g~  198 (215)
                         +|  +++++ ++|+++..+.|.
T Consensus       136 ---vP--Tllly-k~G~~v~~~vG~  154 (175)
T cd02987         136 ---LP--ALLVY-KGGELIGNFVRV  154 (175)
T ss_pred             ---CC--EEEEE-ECCEEEEEEech
Confidence               99  55555 799999887763

It specifically binds G protein betagamma (Gbg)-subunits with high affinity, resulting in the solubilization of Gbg from the plasma membrane. This impedes the formation of a functional G protein trimer (G protein alphabetagamma), thereby inhibiting G protein-mediated signal transduction. Phd also inhibits the GTPase activity of G protein alpha. Phd can be phosphorylated by protein kinase A and G protein-coupled receptor kinase 2, leading to its inactivation. Phd was originally isolated from the retina, where it is highly expressed and has been implicated to play an important role in light adaptation. It is also found in the pineal gland, liver, spleen, striated muscle and the brain. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-terminal helical domain.

>KOG0908 consensus Thioredoxin-like protein [Posttranslational modification, protein turnover, chaperones]

Probab=98.72  E-value=3.6e-08  Score=78.20  Aligned_cols=79  Identities=34%  Similarity=0.391  Sum_probs=63.0

Q ss_pred             ecCCcCCCcEEEEEEcCCCChhhHHHHHHHHHHHHHHHHcCcEEEEEeCCCHHHHHHHHHHcCCCeEEEEcCChhHHHHh
Q 028030           88 SLSKFKGKPVVVYFYPADETPGCTKQACAFRDSYEKFKKAGAEVIGISGDDSSSHKAFAKKYRLPYTLLSDEGNKVRKEW  167 (215)
Q Consensus        88 ~l~~~~gk~~ll~f~~a~~C~~C~~~~~~l~~l~~~~~~~~v~vv~vs~d~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~  167 (215)
                      .++.-.+|.++|+|+ ++||++|+...|.+..+..+|+  +..++-|.+                     |+-+..+..+
T Consensus        15 ~ls~ag~k~v~Vdft-a~wCGPCk~IaP~Fs~lankYp--~aVFlkVdV---------------------d~c~~taa~~   70 (288)
T KOG0908|consen   15 ELSAAGGKLVVVDFT-ASWCGPCKRIAPIFSDLANKYP--GAVFLKVDV---------------------DECRGTAATN   70 (288)
T ss_pred             hhhccCceEEEEEEE-ecccchHHhhhhHHHHhhhhCc--ccEEEEEeH---------------------HHhhchhhhc
Confidence            344445699999999 9999999999999999999997  568888865                     3445667788


Q ss_pred             CCCccCCCCCCccEEEEEcCCCcEEEEEeCC
Q 028030          168 GVPADFFGSLPGRQTYILDKNGVVQLIYNNQ  198 (215)
Q Consensus       168 g~~~~~~g~~p~~~~~lid~~G~v~~~~~g~  198 (215)
                      |+..     +|   +|++=.+|+-+....|.
T Consensus        71 gV~a-----mP---TFiff~ng~kid~~qGA   93 (288)
T KOG0908|consen   71 GVNA-----MP---TFIFFRNGVKIDQIQGA   93 (288)
T ss_pred             Cccc-----Cc---eEEEEecCeEeeeecCC
Confidence            9987     99   45555789888888774

>TIGR00411 redox_disulf_1 small redox-active disulfide protein 1

Probab=98.72  E-value=1.3e-07  Score=63.14  Aligned_cols=67  Identities=21%  Similarity=0.299  Sum_probs=50.2

Q ss_pred             EEEEEEcCCCChhhHHHHHHHHHHHHHHHHcCcEEEEEeCCCHHHHHHHHHHcCCCeEEEEcCChhHHHHhCCCccCCCC
Q 028030           97 VVVYFYPADETPGCTKQACAFRDSYEKFKKAGAEVIGISGDDSSSHKAFAKKYRLPYTLLSDEGNKVRKEWGVPADFFGS  176 (215)
Q Consensus        97 ~ll~f~~a~~C~~C~~~~~~l~~l~~~~~~~~v~vv~vs~d~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~g~~~~~~g~  176 (215)
                      .|..|| ++||++|+...+.|.+++++++.. +.++.|..+.                     +.++...||+..     
T Consensus         2 ~v~~f~-~~~C~~C~~~~~~l~~l~~~~~~~-~~~~~vd~~~---------------------~~~~~~~~~v~~-----   53 (82)
T TIGR00411         2 KIELFT-SPTCPYCPAAKRVVEEVAKEMGDA-VEVEYINVME---------------------NPQKAMEYGIMA-----   53 (82)
T ss_pred             EEEEEE-CCCCcchHHHHHHHHHHHHHhcCc-eEEEEEeCcc---------------------CHHHHHHcCCcc-----
Confidence            567888 999999999999999999988753 7777777542                     334667789887     


Q ss_pred             CCccEEEEEcCCCcEEEEEeCC
Q 028030          177 LPGRQTYILDKNGVVQLIYNNQ  198 (215)
Q Consensus       177 ~p~~~~~lid~~G~v~~~~~g~  198 (215)
                      +|  +++ +  +|++  .+.|.
T Consensus        54 vP--t~~-~--~g~~--~~~G~   68 (82)
T TIGR00411        54 VP--AIV-I--NGDV--EFIGA   68 (82)
T ss_pred             CC--EEE-E--CCEE--EEecC
Confidence            89  554 5  6664  45553

This protein is homologous to a family of proteins that includes thioredoxins, glutaredoxins, protein-disulfide isomerases, and others, some of which have several such domains. The sequence of this protein at the redox-active disufide site, CPYC, matches glutaredoxins rather than thioredoxins, although its overall sequence seems closer to thioredoxins. It is suggested to be a ribonucleotide-reducing system component distinct from thioredoxin or glutaredoxin.

>PLN02309 5'-adenylylsulfate reductase

Probab=98.71  E-value=1.2e-07  Score=83.08  Aligned_cols=90  Identities=22%  Similarity=0.454  Sum_probs=65.6

Q ss_pred             CCCcEEEEEEcCCCChhhHHHHHHHHHHHHHHHHcCcEEEEEeCCCHHHHHHHHHHcCCCeEEEEcCChhHHH-HhCCCc
Q 028030           93 KGKPVVVYFYPADETPGCTKQACAFRDSYEKFKKAGAEVIGISGDDSSSHKAFAKKYRLPYTLLSDEGNKVRK-EWGVPA  171 (215)
Q Consensus        93 ~gk~~ll~f~~a~~C~~C~~~~~~l~~l~~~~~~~~v~vv~vs~d~~~~~~~~~~~~~~~~~~~~d~~~~~~~-~~g~~~  171 (215)
                      ++|++||+|| ++||++|+...|.+.++++++...++.|+.|+.|.                    .+.++.. .|++..
T Consensus       364 ~~k~vlV~Fy-ApWC~~Cq~m~p~~e~LA~~~~~~~V~f~kVD~d~--------------------~~~~la~~~~~I~~  422 (457)
T PLN02309        364 RKEPWLVVLY-APWCPFCQAMEASYEELAEKLAGSGVKVAKFRADG--------------------DQKEFAKQELQLGS  422 (457)
T ss_pred             CCCeEEEEEE-CCCChHHHHHHHHHHHHHHHhccCCeEEEEEECCC--------------------cchHHHHhhCCCce
Confidence            5789999999 99999999999999999999987779888888652                    1223443 578886


Q ss_pred             cCCCCCCccEEEEEcCCCcEEEEEeCCCCCCccHHHHHHHHh
Q 028030          172 DFFGSLPGRQTYILDKNGVVQLIYNNQFQPEKHIDETLKFLQ  213 (215)
Q Consensus       172 ~~~g~~p~~~~~lid~~G~v~~~~~g~~~~~~~~~~il~~l~  213 (215)
                           +|  +++++.++.+-...|.+.   ..+.+.++..++
T Consensus       423 -----~P--Til~f~~g~~~~v~Y~~~---~R~~~~L~~fv~  454 (457)
T PLN02309        423 -----FP--TILLFPKNSSRPIKYPSE---KRDVDSLLSFVN  454 (457)
T ss_pred             -----ee--EEEEEeCCCCCeeecCCC---CcCHHHHHHHHH
Confidence                 89  788885554333334432   245666766665

>cd02988 Phd_like_VIAF Phosducin (Phd)-like family, Viral inhibitor of apoptosis (IAP)-associated factor (VIAF) subfamily; VIAF is a Phd-like protein that functions in caspase activation during apoptosis

Probab=98.60  E-value=4.8e-07  Score=70.78  Aligned_cols=70  Identities=20%  Similarity=0.290  Sum_probs=56.9

Q ss_pred             CCcEEEEEEcCCCChhhHHHHHHHHHHHHHHHHcCcEEEEEeCCCHHHHHHHHHHcCCCeEEEEcCChhHHHHhCCCccC
Q 028030           94 GKPVVVYFYPADETPGCTKQACAFRDSYEKFKKAGAEVIGISGDDSSSHKAFAKKYRLPYTLLSDEGNKVRKEWGVPADF  173 (215)
Q Consensus        94 gk~~ll~f~~a~~C~~C~~~~~~l~~l~~~~~~~~v~vv~vs~d~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~g~~~~~  173 (215)
                      +++|||.|| ++||++|+...+.|.+++.+|.  .+.|+-|..+.                        ....|++..  
T Consensus       102 ~~~VVV~Fy-a~wc~~C~~m~~~l~~LA~k~~--~vkFvkI~ad~------------------------~~~~~~i~~--  152 (192)
T cd02988         102 DTWVVVHLY-KDGIPLCRLLNQHLSELARKFP--DTKFVKIISTQ------------------------CIPNYPDKN--  152 (192)
T ss_pred             CCEEEEEEE-CCCCchHHHHHHHHHHHHHHCC--CCEEEEEEhHH------------------------hHhhCCCCC--
Confidence            468999999 9999999999999999999996  48888887642                        124677776  


Q ss_pred             CCCCCccEEEEEcCCCcEEEEEeCC
Q 028030          174 FGSLPGRQTYILDKNGVVQLIYNNQ  198 (215)
Q Consensus       174 ~g~~p~~~~~lid~~G~v~~~~~g~  198 (215)
                         +|  +++++ ++|+++..+.|.
T Consensus       153 ---lP--Tlliy-k~G~~v~~ivG~  171 (192)
T cd02988         153 ---LP--TILVY-RNGDIVKQFIGL  171 (192)
T ss_pred             ---CC--EEEEE-ECCEEEEEEeCc
Confidence               99  55555 899999998874

It was identified as an IAP binding protein through a screen of a human B-cell library using a prototype IAP. VIAF lacks a consensus IAP binding motif and while it does not function as an IAP antagonist, it still plays a regulatory role in the complete activation of caspases. VIAF itself is a substrate for IAP-mediated ubiquitination, suggesting that it may be a target of IAPs in the prevention of cell death. The similarity of VIAF to Phd points to a potential role distinct from apoptosis regulation. Phd functions as a cytosolic regulator of G protein by specifically binding to G protein betagamma (Gbg)-subunits. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-terminal helical domain.

>TIGR00412 redox_disulf_2 small redox-active disulfide protein 2

Probab=98.59  E-value=3.2e-07  Score=60.90  Aligned_cols=62  Identities=19%  Similarity=0.256  Sum_probs=44.8

Q ss_pred             EEEEEcCCCChhhHHHHHHHHHHHHHHHHcCcEEEEEeCCCHHHHHHHHHHcCCCeEEEEcCChhHHHHhCCCccCCCCC
Q 028030           98 VVYFYPADETPGCTKQACAFRDSYEKFKKAGAEVIGISGDDSSSHKAFAKKYRLPYTLLSDEGNKVRKEWGVPADFFGSL  177 (215)
Q Consensus        98 ll~f~~a~~C~~C~~~~~~l~~l~~~~~~~~v~vv~vs~d~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~g~~~~~~g~~  177 (215)
                      .|.|| ++||++|+...+.+.++.+++..+ ++++-|  |+.+                      .+..||+..     +
T Consensus         2 ~i~~~-a~~C~~C~~~~~~~~~~~~e~~~~-~~~~~v--~~~~----------------------~a~~~~v~~-----v   50 (76)
T TIGR00412         2 KIQIY-GTGCANCQMTEKNVKKAVEELGID-AEFEKV--TDMN----------------------EILEAGVTA-----T   50 (76)
T ss_pred             EEEEE-CCCCcCHHHHHHHHHHHHHHcCCC-eEEEEe--CCHH----------------------HHHHcCCCc-----C
Confidence            47899 999999999999999999887643 555444  3222                      245688887     9


Q ss_pred             CccEEEEEcCCCcEEEEEeC
Q 028030          178 PGRQTYILDKNGVVQLIYNN  197 (215)
Q Consensus       178 p~~~~~lid~~G~v~~~~~g  197 (215)
                      |  +++ +  ||+++  +.|
T Consensus        51 P--ti~-i--~G~~~--~~G   63 (76)
T TIGR00412        51 P--GVA-V--DGELV--IMG   63 (76)
T ss_pred             C--EEE-E--CCEEE--EEe
Confidence            9  555 4  88877  545

This small protein is found in three archaeal species so far (Methanococcus jannaschii, Archeoglobus fulgidus, and Methanobacterium thermoautotrophicum) as well as in Anabaena PCC7120. It is homologous to thioredoxins, glutaredoxins, and protein disulfide isomerases, and shares with them a redox-active disulfide. The redox active disulfide region CXXC motif resembles neither thioredoxin nor glutaredoxin. A closely related protein found in the same three Archaea, described by redox_disulf_1, has a glutaredoxin-like CP[YH]C sequence; it has been characterized in functional assays as redox-active but unlikely to be a thioredoxin or glutaredoxin.

>cd02982 PDI_b'_family Protein Disulfide Isomerase (PDIb') family, redox inactive TRX-like domain b'; composed of eukaryotic proteins involved in oxidative protein folding in the endoplasmic reticulum (ER) by acting as catalysts and folding assistants

Probab=98.59  E-value=2.9e-07  Score=64.30  Aligned_cols=70  Identities=24%  Similarity=0.448  Sum_probs=54.9

Q ss_pred             CCcEEEEEEcCCCChhhHHHHHHHHHHHHHHHHcCcEEEEEeCCCHHHHHHHHHHcCCCeEEEEcCChhHHHHhCCCccC
Q 028030           94 GKPVVVYFYPADETPGCTKQACAFRDSYEKFKKAGAEVIGISGDDSSSHKAFAKKYRLPYTLLSDEGNKVRKEWGVPADF  173 (215)
Q Consensus        94 gk~~ll~f~~a~~C~~C~~~~~~l~~l~~~~~~~~v~vv~vs~d~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~g~~~~~  173 (215)
                      |+++++.|+ +.||++|....+.+.+++++++++ +.++.|..|.                     ...+...||+... 
T Consensus        12 ~~~~~~~f~-~~~~~~~~~~~~~~~~vA~~~~~~-v~f~~vd~~~---------------------~~~~~~~~~i~~~-   67 (103)
T cd02982          12 GKPLLVLFY-NKDDSESEELRERFKEVAKKFKGK-LLFVVVDADD---------------------FGRHLEYFGLKEE-   67 (103)
T ss_pred             CCCEEEEEE-cCChhhHHHHHHHHHHHHHHhCCe-EEEEEEchHh---------------------hHHHHHHcCCChh-
Confidence            789999999 999999999999999999999965 8888887533                     3457777888721 


Q ss_pred             CCCCCccEEEEEcCC-CcE
Q 028030          174 FGSLPGRQTYILDKN-GVV  191 (215)
Q Consensus       174 ~g~~p~~~~~lid~~-G~v  191 (215)
                        .+|  ++++++.+ |+.
T Consensus        68 --~~P--~~~~~~~~~~~k   82 (103)
T cd02982          68 --DLP--VIAIINLSDGKK   82 (103)
T ss_pred             --hCC--EEEEEecccccc
Confidence              188  77777763 443

Members of this family include PDI, calsequestrin and other PDI-related proteins like ERp72, ERp57 (or ERp60), ERp44, P5 and PDIR. PDI, ERp57, ERp72, P5 and PDIR are all oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. These proteins contain multiple copies of a redox active TRX (a) domain containing a CXXC motif, and one or more redox inactive TRX-like (b) domains. The molecular structure of PDI is abb'a'. Also included in this family is the PDI-related protein ERp27, w

>TIGR01130 ER_PDI_fam protein disulfide isomerases, eukaryotic

Probab=98.56  E-value=4.8e-07  Score=79.51  Aligned_cols=77  Identities=25%  Similarity=0.393  Sum_probs=61.0

Q ss_pred             CCCcEEEEEEcCCCChhhHHHHHHHHHHHHHHHHcC--cEEEEEeCCCHHHHHHHHHHcCCCeEEEEcCChhHHHHhCCC
Q 028030           93 KGKPVVVYFYPADETPGCTKQACAFRDSYEKFKKAG--AEVIGISGDDSSSHKAFAKKYRLPYTLLSDEGNKVRKEWGVP  170 (215)
Q Consensus        93 ~gk~~ll~f~~a~~C~~C~~~~~~l~~l~~~~~~~~--v~vv~vs~d~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~g~~  170 (215)
                      ++++++|.|| ++||++|+...|.+.++++.+.+.+  +.++.|..+                     .+.++...|++.
T Consensus        17 ~~~~~~v~f~-a~wC~~c~~~~~~~~~~a~~~~~~~~~v~~~~vd~~---------------------~~~~l~~~~~i~   74 (462)
T TIGR01130        17 SHEFVLVEFY-APWCGHCKSLAPEYEKAADELKKKGPPIKLAKVDAT---------------------EEKDLAQKYGVS   74 (462)
T ss_pred             cCCCEEEEEE-CCCCHHHHhhhHHHHHHHHHHhhcCCceEEEEEECC---------------------CcHHHHHhCCCc
Confidence            4688999999 9999999999999999999888765  667777643                     345788889998


Q ss_pred             ccCCCCCCccEEEEEcCCCcE-EEEEeCCC
Q 028030          171 ADFFGSLPGRQTYILDKNGVV-QLIYNNQF  199 (215)
Q Consensus       171 ~~~~g~~p~~~~~lid~~G~v-~~~~~g~~  199 (215)
                      .     +|  +++++ ++|+. +..+.|..
T Consensus        75 ~-----~P--t~~~~-~~g~~~~~~~~g~~   96 (462)
T TIGR01130        75 G-----YP--TLKIF-RNGEDSVSDYNGPR   96 (462)
T ss_pred             c-----cc--EEEEE-eCCccceeEecCCC
Confidence            7     89  77766 57776 56677754

Members of this family have at least two protein-disulfide domains, each similar to thioredoxin but with the redox-active disulfide in the motif PWCGHCK, and an ER retention signal at the extreme C-terminus (KDEL, HDEL, and similar motifs).

>PTZ00062 glutaredoxin; Provisional

Probab=98.56  E-value=4.6e-07  Score=71.35  Aligned_cols=64  Identities=11%  Similarity=0.024  Sum_probs=53.9

Q ss_pred             CcEEEEEEcCCCChhhHHHHHHHHHHHHHHHHcCcEEEEEeCCCHHHHHHHHHHcCCCeEEEEcCChhHHHHhCCCccCC
Q 028030           95 KPVVVYFYPADETPGCTKQACAFRDSYEKFKKAGAEVIGISGDDSSSHKAFAKKYRLPYTLLSDEGNKVRKEWGVPADFF  174 (215)
Q Consensus        95 k~~ll~f~~a~~C~~C~~~~~~l~~l~~~~~~~~v~vv~vs~d~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~g~~~~~~  174 (215)
                      ..+|++|| ++||++|+...+.|.++.++|+  ++.++-|..|                             |++..   
T Consensus        18 g~~vl~f~-a~w~~~C~~m~~vl~~l~~~~~--~~~F~~V~~d-----------------------------~~V~~---   62 (204)
T PTZ00062         18 GKLVLYVK-SSKEPEYEQLMDVCNALVEDFP--SLEFYVVNLA-----------------------------DANNE---   62 (204)
T ss_pred             CcEEEEEe-CCCCcchHHHHHHHHHHHHHCC--CcEEEEEccc-----------------------------cCccc---
Confidence            56899999 9999999999999999999996  4888888643                             78876   


Q ss_pred             CCCCccEEEEEcCCCcEEEEEeCC
Q 028030          175 GSLPGRQTYILDKNGVVQLIYNNQ  198 (215)
Q Consensus       175 g~~p~~~~~lid~~G~v~~~~~g~  198 (215)
                        +|  +.+++ ++|+++.++.|.
T Consensus        63 --vP--tfv~~-~~g~~i~r~~G~   81 (204)
T PTZ00062         63 --YG--VFEFY-QNSQLINSLEGC   81 (204)
T ss_pred             --ce--EEEEE-ECCEEEeeeeCC
Confidence              99  55555 799999999884

>PTZ00102 disulphide isomerase; Provisional

Probab=98.51  E-value=6e-07  Score=79.49  Aligned_cols=76  Identities=21%  Similarity=0.357  Sum_probs=58.6

Q ss_pred             CCCcEEEEEEcCCCChhhHHHHHHHHHHHHHHHHcC--cEEEEEeCCCHHHHHHHHHHcCCCeEEEEcCChhHHHHhCCC
Q 028030           93 KGKPVVVYFYPADETPGCTKQACAFRDSYEKFKKAG--AEVIGISGDDSSSHKAFAKKYRLPYTLLSDEGNKVRKEWGVP  170 (215)
Q Consensus        93 ~gk~~ll~f~~a~~C~~C~~~~~~l~~l~~~~~~~~--v~vv~vs~d~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~g~~  170 (215)
                      +++.++|.|| ++||++|+...|.+.++++.+.+.+  +.+.-|..                     +.+..+.+.|++.
T Consensus        48 ~~~~~lv~f~-a~wC~~Ck~~~p~~~~~a~~~~~~~~~i~~~~vd~---------------------~~~~~l~~~~~i~  105 (477)
T PTZ00102         48 ENEIVLVKFY-APWCGHCKRLAPEYKKAAKMLKEKKSEIVLASVDA---------------------TEEMELAQEFGVR  105 (477)
T ss_pred             cCCcEEEEEE-CCCCHHHHHhhHHHHHHHHHHHhcCCcEEEEEEEC---------------------CCCHHHHHhcCCC
Confidence            4789999999 9999999999999999988887643  55555543                     3456788899998


Q ss_pred             ccCCCCCCccEEEEEcCCCcEEEEEeCCC
Q 028030          171 ADFFGSLPGRQTYILDKNGVVQLIYNNQF  199 (215)
Q Consensus       171 ~~~~g~~p~~~~~lid~~G~v~~~~~g~~  199 (215)
                      +     +|  ++++++.++.+  .+.|..
T Consensus       106 ~-----~P--t~~~~~~g~~~--~y~g~~  125 (477)
T PTZ00102        106 G-----YP--TIKFFNKGNPV--NYSGGR  125 (477)
T ss_pred             c-----cc--EEEEEECCceE--EecCCC
Confidence            7     99  88888755544  666643

>PF13728 TraF: F plasmid transfer operon protein

Probab=98.51  E-value=3.3e-07  Score=72.92  Aligned_cols=95  Identities=20%  Similarity=0.317  Sum_probs=70.1

Q ss_pred             ecCCcCCCcEEEEEEcCCCChhhHHHHHHHHHHHHHHHHcCcEEEEEeCCCHHHHHHHHHHcCCCeEEEEcCChhHHHHh
Q 028030           88 SLSKFKGKPVVVYFYPADETPGCTKQACAFRDSYEKFKKAGAEVIGISGDDSSSHKAFAKKYRLPYTLLSDEGNKVRKEW  167 (215)
Q Consensus        88 ~l~~~~gk~~ll~f~~a~~C~~C~~~~~~l~~l~~~~~~~~v~vv~vs~d~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~  167 (215)
                      .+.++.+++-|++|+ ...|+.|....|.|+.+.++|   |+.|+.||.|....         ..|+-.. .+..+++.+
T Consensus       114 ~l~~la~~~gL~~F~-~~~C~~C~~~~pil~~~~~~y---g~~v~~vs~DG~~~---------~~fp~~~-~~~g~~~~l  179 (215)
T PF13728_consen  114 ALKQLAQKYGLFFFY-RSDCPYCQQQAPILQQFADKY---GFSVIPVSLDGRPI---------PSFPNPR-PDPGQAKRL  179 (215)
T ss_pred             HHHHHhhCeEEEEEE-cCCCchhHHHHHHHHHHHHHh---CCEEEEEecCCCCC---------cCCCCCC-CCHHHHHHc
Confidence            355667789999999 788999999999999999887   59999999985421         0122222 156688899


Q ss_pred             CCCccCCCCCCccEEEEEcCCC-cEEEEEeCCCCCCc
Q 028030          168 GVPADFFGSLPGRQTYILDKNG-VVQLIYNNQFQPEK  203 (215)
Q Consensus       168 g~~~~~~g~~p~~~~~lid~~G-~v~~~~~g~~~~~~  203 (215)
                      |+..     +|  ++||+++++ ++.-...|..+.++
T Consensus       180 ~v~~-----~P--al~Lv~~~~~~~~pv~~G~~s~~~  209 (215)
T PF13728_consen  180 GVKV-----TP--ALFLVNPNTKKWYPVSQGFMSLDE  209 (215)
T ss_pred             CCCc-----CC--EEEEEECCCCeEEEEeeecCCHHH
Confidence            9976     88  999999999 44444556444333

>PF13911 AhpC-TSA_2: AhpC/TSA antioxidant enzyme

Probab=98.48  E-value=9.4e-07  Score=63.29  Aligned_cols=81  Identities=19%  Similarity=0.314  Sum_probs=66.5

Q ss_pred             HHHHHHHHHHcCcEEEEEeCCCHHHHHHHHHHcCCCeEEEEcCChhHHHHhCCCccCCC---------------------
Q 028030          117 FRDSYEKFKKAGAEVIGISGDDSSSHKAFAKKYRLPYTLLSDEGNKVRKEWGVPADFFG---------------------  175 (215)
Q Consensus       117 l~~l~~~~~~~~v~vv~vs~d~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~g~~~~~~g---------------------  175 (215)
                      |.+..+++++.|+++|.|..++.+.+++|++..+++++++.|++.++++++|+......                     
T Consensus         2 L~~~~~~l~~~gv~lv~I~~g~~~~~~~f~~~~~~p~~ly~D~~~~lY~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (115)
T PF13911_consen    2 LSRRKPELEAAGVKLVVIGCGSPEGIEKFCELTGFPFPLYVDPERKLYKALGLKRGLKWSLLPPALWSGLSNIVQSAKNG   81 (115)
T ss_pred             hhHhHHHHHHcCCeEEEEEcCCHHHHHHHHhccCCCCcEEEeCcHHHHHHhCCccccccCCCchHHHHHHHHHHHHHHHc
Confidence            56677888889999999999999779999999999999999999999999999752110                     


Q ss_pred             CCC----------ccEEEEEcCCCcEEEEEeC
Q 028030          176 SLP----------GRQTYILDKNGVVQLIYNN  197 (215)
Q Consensus       176 ~~p----------~~~~~lid~~G~v~~~~~g  197 (215)
                      .++          ..-.||+|++|+|++.+..
T Consensus        82 ~~~~~~~~g~~~q~GG~fv~d~~g~v~~~hr~  113 (115)
T PF13911_consen   82 GIPGNKDQGDGWQLGGTFVFDPGGKVLYEHRD  113 (115)
T ss_pred             CCCCcccCCCceecCeEEEEcCCCeEEEEEec
Confidence            011          1357999999999988764

>PF05176 ATP-synt_10: ATP10 protein; InterPro: IPR007849 This entry represents the ATPase assembly factor ATP10 found in mitochondria, which is essential for the assembly of the mitochondrial F1-F0 complex

Probab=98.47  E-value=3.7e-06  Score=68.36  Aligned_cols=137  Identities=15%  Similarity=0.208  Sum_probs=90.7

Q ss_pred             CCCCCCCCeEEeCCCCCeeecCCc-CCCcEEEEEEcCCCChhhHHHHHHHHHHHHHHHH-c--CcEEEEEeCCCHHH---
Q 028030           69 SKGQAPPSFTLKDQEGRNVSLSKF-KGKPVVVYFYPADETPGCTKQACAFRDSYEKFKK-A--GAEVIGISGDDSSS---  141 (215)
Q Consensus        69 ~~g~~~P~f~l~~~~g~~~~l~~~-~gk~~ll~f~~a~~C~~C~~~~~~l~~l~~~~~~-~--~v~vv~vs~d~~~~---  141 (215)
                      ......|+|...+++|+.+++.+. +||+.||..+...|-..|....-.  ...++|.+ .  .+++|-|++.+.--   
T Consensus        96 ~kAlyFP~l~g~tL~g~~~~~~~~l~gkvSlV~l~s~~~ge~~~~sw~~--p~~~~~~~~~~~~~q~v~In~~e~~~k~~  173 (252)
T PF05176_consen   96 DKALYFPNLQGKTLAGNKVDTTDLLRGKVSLVCLFSSAWGEEMVDSWTS--PFLEDFLQEPYGRVQIVEINLIENWLKSW  173 (252)
T ss_pred             HhCCcCCCCccccCCCCCcccccccCCceEEEEEeehHHHHHHHHHHhh--HHHHHHhhCCCCceEEEEEecchHHHHHH
Confidence            344688999999999999988775 999988887756665555544333  22333332 2  69999999855421   


Q ss_pred             HHHHH-HH--cC------CCeEEEEcC--ChhHHHHhCCCccCCCCCCccEEEEEcCCCcEEEEEeCCCCCCccHHHHHH
Q 028030          142 HKAFA-KK--YR------LPYTLLSDE--GNKVRKEWGVPADFFGSLPGRQTYILDKNGVVQLIYNNQFQPEKHIDETLK  210 (215)
Q Consensus       142 ~~~~~-~~--~~------~~~~~~~d~--~~~~~~~~g~~~~~~g~~p~~~~~lid~~G~v~~~~~g~~~~~~~~~~il~  210 (215)
                      +..+. ..  ..      -.|.++.+.  ...+.+.+|+.+     .-+..+||||.+|+|+|...|...+ +.++.+.+
T Consensus       174 l~~~~~~~lrk~ip~~~h~~Yf~~~~~~~~~~iRe~Lgi~N-----~~~GYvyLVD~~grIRWagsG~At~-~E~~~L~k  247 (252)
T PF05176_consen  174 LVKLFMGSLRKSIPEERHDRYFIVYRGQLSDDIREALGINN-----SYVGYVYLVDPNGRIRWAGSGPATP-EELESLWK  247 (252)
T ss_pred             HHHHHhhhhhccCCHHHCceEEEEeCCcccHHHHHHhCCCC-----CCcCeEEEECCCCeEEeCccCCCCH-HHHHHHHH
Confidence            12222 11  11      224444444  568999999987     4455999999999999998886443 44666666


Q ss_pred             HHh
Q 028030          211 FLQ  213 (215)
Q Consensus       211 ~l~  213 (215)
                      .++
T Consensus       248 ~~~  250 (252)
T PF05176_consen  248 CVK  250 (252)
T ss_pred             HHh
Confidence            654

A yeast nuclear gene (ATP10) encodes a product that is essential for the assembly of a functional mitochondrial ATPase complex. Mutations in ATP10 induce a loss of rutamycin sensitivity in the mitochondrial ATPase, but do not affect the respiratory enzymes. ATP10 has an Mr of 30,293 and its primary structure is not related to any known subunit of the yeast or mammalian mitochondrial ATPase complexes. ATP10 is associated with the mitochondrial membrane. It is suggested that the ATP10 product is not a subunit of the ATPase complex but rather a protein required for the assembly of the F0 sector of the complex [].; GO: 0033615 mitochondrial proton-transporting ATP synthase complex assembly, 0005743 mitochondrial inner membrane

>cd02960 AGR Anterior Gradient (AGR) family; members of this family are similar to secreted proteins encoded by the cement gland-specific genes XAG-1 and XAG-2, expressed in the anterior region of dorsal ectoderm of Xenopus

Probab=98.46  E-value=1.5e-06  Score=63.48  Aligned_cols=77  Identities=14%  Similarity=0.268  Sum_probs=48.3

Q ss_pred             CCCcEEEEEEcCCCChhhHHHHHHHHH--HHHHHHHcCcEEEEEeCCCHHHHHHHHHHcCCCeEEEEcCChhHHHHhCCC
Q 028030           93 KGKPVVVYFYPADETPGCTKQACAFRD--SYEKFKKAGAEVIGISGDDSSSHKAFAKKYRLPYTLLSDEGNKVRKEWGVP  170 (215)
Q Consensus        93 ~gk~~ll~f~~a~~C~~C~~~~~~l~~--l~~~~~~~~v~vv~vs~d~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~g~~  170 (215)
                      .||+++|+|+ ++||++|+..-..+-+  -..++-++++.+|-+..|..+                  .+..   ..| .
T Consensus        22 ~~Kpvmv~f~-sdwC~~Ck~l~k~~f~~~eV~~~l~~~Fv~V~l~~d~td------------------~~~~---~~g-~   78 (130)
T cd02960          22 SNKPLMVIHH-LEDCPHSQALKKAFAEHKEIQKLAQEDFIMLNLVHETTD------------------KNLS---PDG-Q   78 (130)
T ss_pred             CCCeEEEEEe-CCcCHhHHHHHHHhhCCHHHHHHHHhCeEEEEEEeccCC------------------CCcC---ccC-c
Confidence            5899999999 9999999987776532  222333334544444433211                  0000   012 1


Q ss_pred             ccCCCCCCccEEEEEcCCCcEEEEEeCCC
Q 028030          171 ADFFGSLPGRQTYILDKNGVVQLIYNNQF  199 (215)
Q Consensus       171 ~~~~g~~p~~~~~lid~~G~v~~~~~g~~  199 (215)
                           .+|  +++++|++|+++....|..
T Consensus        79 -----~vP--tivFld~~g~vi~~i~Gy~  100 (130)
T cd02960          79 -----YVP--RIMFVDPSLTVRADITGRY  100 (130)
T ss_pred             -----ccC--eEEEECCCCCCcccccccc
Confidence                 278  9999999999998866643

They are implicated in the formation of the cement gland and the induction of forebrain fate. The human homologs, hAG-2 and hAG-3, are secreted proteins associated with estrogen-positive breast tumors. Yeast two-hybrid studies identified the metastasis-associated C4.4a protein and dystroglycan as binding partners, indicating possible roles in the development and progression of breast cancer. hAG-2 has also been implicated in prostate cancer. Its gene was cloned as an androgen-inducible gene and it was shown to be overexpressed in prostate cancer cells at the mRNA and protein levels. AGR proteins contain one conserved cysteine corresponding to the first cysteine in the CXXC motif of TRX. They show high sequence similarity to ERp19.

>TIGR02187 GlrX_arch Glutaredoxin-like domain protein

Probab=98.44  E-value=1.2e-06  Score=69.80  Aligned_cols=79  Identities=19%  Similarity=0.210  Sum_probs=58.2

Q ss_pred             CcCCCcEEEEEEcC---CCChhhHHHHHHHHHHHHHHHHcCcEEEEEeCCCHHHHHHHHHHcCCCeEEEEcCChhHHHHh
Q 028030           91 KFKGKPVVVYFYPA---DETPGCTKQACAFRDSYEKFKKAGAEVIGISGDDSSSHKAFAKKYRLPYTLLSDEGNKVRKEW  167 (215)
Q Consensus        91 ~~~gk~~ll~f~~a---~~C~~C~~~~~~l~~l~~~~~~~~v~vv~vs~d~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~  167 (215)
                      .+++.+.++.|+ +   .||++|+...|.+.++.+++.  ++++..+..|.                   |.+.++...|
T Consensus        16 ~~~~~~~i~~f~-~~~a~wC~~C~~~~p~l~~la~~~~--~~~i~~v~vd~-------------------~~~~~l~~~~   73 (215)
T TIGR02187        16 ELKNPVEIVVFT-DNDKEGCQYCKETEQLLEELSEVSP--KLKLEIYDFDT-------------------PEDKEEAEKY   73 (215)
T ss_pred             hcCCCeEEEEEc-CCCCCCCCchHHHHHHHHHHHhhCC--CceEEEEecCC-------------------cccHHHHHHc
Confidence            345556677788 6   999999999999999999885  35555554432                   2456889999


Q ss_pred             CCCccCCCCCCccEEEEEcCCCcEEE-EEeCCC
Q 028030          168 GVPADFFGSLPGRQTYILDKNGVVQL-IYNNQF  199 (215)
Q Consensus       168 g~~~~~~g~~p~~~~~lid~~G~v~~-~~~g~~  199 (215)
                      ++..     +|  ++++++ +|+.+. .+.|..
T Consensus        74 ~V~~-----~P--t~~~f~-~g~~~~~~~~G~~   98 (215)
T TIGR02187        74 GVER-----VP--TTIILE-EGKDGGIRYTGIP   98 (215)
T ss_pred             CCCc-----cC--EEEEEe-CCeeeEEEEeecC
Confidence            9997     99  777765 677764 777743

This family of archaeal proteins contains a C-terminal domain with homology to bacterial and eukaryotic glutaredoxins, including a CPYC motif. There is an N-terminal domain which has even more distant homology to glutaredoxins. The name "glutaredoxin" may be inappropriate in the sense of working in tandem with glutathione and glutathione reductase which may not be present in the archaea. The overall domain structure appears to be related to bacterial alkylhydroperoxide reductases, but the homology may be distant enough that the function of this family is wholly different.

>TIGR02739 TraF type-F conjugative transfer system pilin assembly protein TraF

Probab=98.43  E-value=9.3e-07  Score=71.80  Aligned_cols=104  Identities=15%  Similarity=0.225  Sum_probs=76.4

Q ss_pred             ecCCcCCCcEEEEEEcCCCChhhHHHHHHHHHHHHHHHHcCcEEEEEeCCCHHHHHHHHHHcCCCeEEEEcCChhHHHHh
Q 028030           88 SLSKFKGKPVVVYFYPADETPGCTKQACAFRDSYEKFKKAGAEVIGISGDDSSSHKAFAKKYRLPYTLLSDEGNKVRKEW  167 (215)
Q Consensus        88 ~l~~~~gk~~ll~f~~a~~C~~C~~~~~~l~~l~~~~~~~~v~vv~vs~d~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~  167 (215)
                      .+.++.+++-|++|+ ...|+.|.+..|.|+.+.++|+   +.+++||+|....         ..||... .+...++.+
T Consensus       144 ~i~~la~~~gL~fFy-~~~C~~C~~~apil~~fa~~yg---i~v~~VS~DG~~~---------p~fp~~~-~d~gqa~~l  209 (256)
T TIGR02739       144 AIQQLSQSYGLFFFY-RGKSPISQKMAPVIQAFAKEYG---ISVIPISVDGTLI---------PGLPNSR-SDSGQAQHL  209 (256)
T ss_pred             HHHHHHhceeEEEEE-CCCCchhHHHHHHHHHHHHHhC---CeEEEEecCCCCC---------CCCCCcc-CChHHHHhc
Confidence            355566789999999 7889999999999999988765   9999999986421         1133322 245678889


Q ss_pred             CCCccCCCCCCccEEEEEcCC-CcEEEEEeCCCCCCccHHHHHHHH
Q 028030          168 GVPADFFGSLPGRQTYILDKN-GVVQLIYNNQFQPEKHIDETLKFL  212 (215)
Q Consensus       168 g~~~~~~g~~p~~~~~lid~~-G~v~~~~~g~~~~~~~~~~il~~l  212 (215)
                      |+..     +|  ++||++++ +++.-...|.+..++..+.++..+
T Consensus       210 ~v~~-----~P--al~Lv~~~t~~~~pv~~G~iS~deL~~Ri~~v~  248 (256)
T TIGR02739       210 GVKY-----FP--ALYLVNPKSQKMSPLAYGFISQDELKERILNVL  248 (256)
T ss_pred             CCcc-----Cc--eEEEEECCCCcEEEEeeccCCHHHHHHHHHHHH
Confidence            9986     78  99999999 555555667666666666666554

This protein is part of a large group of proteins involved in conjugative transfer of plasmid DNA, specifically the F-type system. This protein has been predicted to contain a thioredoxin fold and has been shown to be localized to the periplasm. Unlike the related protein TrbB (TIGR02738), TraF does not contain a conserved pair of cysteines and has been shown not to function as a thiol disulfide isomerase by complementation of an Ecoli DsbA defect. The protein is believed to be involved in pilin assembly. Even more closely related than TrbB is a clade of genes (TIGR02740) which do contain the CXXC motif, but it is unclear whether these genes are involved in type-F conjugation systems per se.

>PHA02125 thioredoxin-like protein

Probab=98.41  E-value=5.3e-06  Score=54.77  Aligned_cols=72  Identities=15%  Similarity=0.251  Sum_probs=49.6

Q ss_pred             EEEEEcCCCChhhHHHHHHHHHHHHHHHHcCcEEEEEeCCCHHHHHHHHHHcCCCeEEEEcCChhHHHHhCCCccCCCCC
Q 028030           98 VVYFYPADETPGCTKQACAFRDSYEKFKKAGAEVIGISGDDSSSHKAFAKKYRLPYTLLSDEGNKVRKEWGVPADFFGSL  177 (215)
Q Consensus        98 ll~f~~a~~C~~C~~~~~~l~~l~~~~~~~~v~vv~vs~d~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~g~~~~~~g~~  177 (215)
                      ++.|| ++||++|+...+.|.++.       +.++-|+                     .|+..++.+.|++..     +
T Consensus         2 iv~f~-a~wC~~Ck~~~~~l~~~~-------~~~~~vd---------------------~~~~~~l~~~~~v~~-----~   47 (75)
T PHA02125          2 IYLFG-AEWCANCKMVKPMLANVE-------YTYVDVD---------------------TDEGVELTAKHHIRS-----L   47 (75)
T ss_pred             EEEEE-CCCCHhHHHHHHHHHHHh-------heEEeee---------------------CCCCHHHHHHcCCce-----e
Confidence            68899 999999999888876541       2333332                     245668899999997     9


Q ss_pred             CccEEEEEcCCCcEEEEEeCCCCCCccHHHHHHHH
Q 028030          178 PGRQTYILDKNGVVQLIYNNQFQPEKHIDETLKFL  212 (215)
Q Consensus       178 p~~~~~lid~~G~v~~~~~g~~~~~~~~~~il~~l  212 (215)
                      |  + ++   +|+.+..+.|.   ++++.++.+.|
T Consensus        48 P--T-~~---~g~~~~~~~G~---~~~~~~l~~~~   73 (75)
T PHA02125         48 P--T-LV---NTSTLDRFTGV---PRNVAELKEKL   73 (75)
T ss_pred             C--e-EE---CCEEEEEEeCC---CCcHHHHHHHh
Confidence            9  4 43   67877777773   23455665554

>PRK13703 conjugal pilus assembly protein TraF; Provisional

Probab=98.34  E-value=1.8e-06  Score=69.75  Aligned_cols=104  Identities=15%  Similarity=0.191  Sum_probs=75.3

Q ss_pred             ecCCcCCCcEEEEEEcCCCChhhHHHHHHHHHHHHHHHHcCcEEEEEeCCCHHHHHHHHHHcCCCeEEEEcCChhHHHHh
Q 028030           88 SLSKFKGKPVVVYFYPADETPGCTKQACAFRDSYEKFKKAGAEVIGISGDDSSSHKAFAKKYRLPYTLLSDEGNKVRKEW  167 (215)
Q Consensus        88 ~l~~~~gk~~ll~f~~a~~C~~C~~~~~~l~~l~~~~~~~~v~vv~vs~d~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~  167 (215)
                      .+.++.+++-|++|+ ...|++|.+..|.|+.+.++|+   +.|++||+|....         ..||... .+...+..+
T Consensus       137 ~i~~la~~~GL~fFy-~s~Cp~C~~~aPil~~fa~~yg---~~v~~VS~DG~~~---------p~fp~~~-~d~gqa~~l  202 (248)
T PRK13703        137 AIAKLAEHYGLMFFY-RGQDPIDGQLAQVINDFRDTYG---LSVIPVSVDGVIN---------PLLPDSR-TDQGQAQRL  202 (248)
T ss_pred             HHHHHHhcceEEEEE-CCCCchhHHHHHHHHHHHHHhC---CeEEEEecCCCCC---------CCCCCCc-cChhHHHhc
Confidence            355566789999999 7889999999999999988765   9999999986421         1133322 233455789


Q ss_pred             CCCccCCCCCCccEEEEEcCCC-cEEEEEeCCCCCCccHHHHHHHH
Q 028030          168 GVPADFFGSLPGRQTYILDKNG-VVQLIYNNQFQPEKHIDETLKFL  212 (215)
Q Consensus       168 g~~~~~~g~~p~~~~~lid~~G-~v~~~~~g~~~~~~~~~~il~~l  212 (215)
                      |+..     +|  ++||++++. ++.-...|.+..++..+.++...
T Consensus       203 ~v~~-----~P--Al~Lv~~~t~~~~pv~~G~iS~deL~~Ri~~v~  241 (248)
T PRK13703        203 GVKY-----FP--ALMLVDPKSGSVRPLSYGFITQDDLAKRFLNVS  241 (248)
T ss_pred             CCcc-----cc--eEEEEECCCCcEEEEeeccCCHHHHHHHHHHHH
Confidence            9976     78  999999996 66656667666555556655443

>cd02973 TRX_GRX_like Thioredoxin (TRX)-Glutaredoxin (GRX)-like family; composed of archaeal and bacterial proteins that show similarity to both TRX and GRX, including the C-terminal TRX-fold subdomain of Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO)

Probab=98.30  E-value=6.2e-06  Score=52.95  Aligned_cols=64  Identities=19%  Similarity=0.287  Sum_probs=45.5

Q ss_pred             EEEEEEcCCCChhhHHHHHHHHHHHHHHHHcCcEEEEEeCCCHHHHHHHHHHcCCCeEEEEcCChhHHHHhCCCccCCCC
Q 028030           97 VVVYFYPADETPGCTKQACAFRDSYEKFKKAGAEVIGISGDDSSSHKAFAKKYRLPYTLLSDEGNKVRKEWGVPADFFGS  176 (215)
Q Consensus        97 ~ll~f~~a~~C~~C~~~~~~l~~l~~~~~~~~v~vv~vs~d~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~g~~~~~~g~  176 (215)
                      -+..|+ +.||++|+...+.|+++.+++.  ++++.-+..|+                     ..++...||+..     
T Consensus         2 ~v~~f~-~~~C~~C~~~~~~l~~l~~~~~--~i~~~~id~~~---------------------~~~l~~~~~i~~-----   52 (67)
T cd02973           2 NIEVFV-SPTCPYCPDAVQAANRIAALNP--NISAEMIDAAE---------------------FPDLADEYGVMS-----   52 (67)
T ss_pred             EEEEEE-CCCCCCcHHHHHHHHHHHHhCC--ceEEEEEEccc---------------------CHhHHHHcCCcc-----
Confidence            477888 9999999999999999866543  47777776533                     334667788876     


Q ss_pred             CCccEEEEEcCCCcEEEE
Q 028030          177 LPGRQTYILDKNGVVQLI  194 (215)
Q Consensus       177 ~p~~~~~lid~~G~v~~~  194 (215)
                      +|   ++++  +|++++.
T Consensus        53 vP---ti~i--~~~~~~~   65 (67)
T cd02973          53 VP---AIVI--NGKVEFV   65 (67)
T ss_pred             cC---EEEE--CCEEEEe
Confidence            88   4556  4566543

All members contain a redox-active CXXC motif and may function as PDOs. The archaeal proteins Mj0307 and Mt807 show structures more similar to GRX, but activities more similar to TRX. Some members of the family are similar to PfPDO in that they contain a second CXXC motif located in a second TRX-fold subdomain at the N-terminus; the superimposable N- and C-terminal TRX subdomains form a compact structure. PfPDO is postulated to be the archaeal counterpart of bacterial DsbA and eukaryotic protein disulfide isomerase (PDI). The C-terminal CXXC motif of PfPDO is required for its oxidase, reductase and isomerase activities. Also included in the family is the C-terminal TRX-fold subdomain of the N-terminal domain (NTD) of bacteri

>TIGR02187 GlrX_arch Glutaredoxin-like domain protein

Probab=98.30  E-value=3.6e-06  Score=67.02  Aligned_cols=83  Identities=12%  Similarity=0.191  Sum_probs=54.8

Q ss_pred             cCCCcEEEEEEcCCCChhhHHHHHHHHHHHHHHHHcCcEEEEEeCCCHHHHHHHHHHcCCCeEEEEcCChhHHHHhCCCc
Q 028030           92 FKGKPVVVYFYPADETPGCTKQACAFRDSYEKFKKAGAEVIGISGDDSSSHKAFAKKYRLPYTLLSDEGNKVRKEWGVPA  171 (215)
Q Consensus        92 ~~gk~~ll~f~~a~~C~~C~~~~~~l~~l~~~~~~~~v~vv~vs~d~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~g~~~  171 (215)
                      +.+.++|+.|| ++||++|+...+.++++..++.  .+.+.-|..                     |...++...||+..
T Consensus       131 ~~~pv~I~~F~-a~~C~~C~~~~~~l~~l~~~~~--~i~~~~vD~---------------------~~~~~~~~~~~V~~  186 (215)
T TIGR02187       131 LDEPVRIEVFV-TPTCPYCPYAVLMAHKFALAND--KILGEMIEA---------------------NENPDLAEKYGVMS  186 (215)
T ss_pred             cCCCcEEEEEE-CCCCCCcHHHHHHHHHHHHhcC--ceEEEEEeC---------------------CCCHHHHHHhCCcc
Confidence            34455666699 9999999988888888776643  366555543                     34557778899987


Q ss_pred             cCCCCCCccEEEEEcCCCcEEEEEeCCCCCCccHHHHHHHHh
Q 028030          172 DFFGSLPGRQTYILDKNGVVQLIYNNQFQPEKHIDETLKFLQ  213 (215)
Q Consensus       172 ~~~g~~p~~~~~lid~~G~v~~~~~g~~~~~~~~~~il~~l~  213 (215)
                           +|  + ++++++|+.   +.|..    ..+++.+.|+
T Consensus       187 -----vP--t-l~i~~~~~~---~~G~~----~~~~l~~~l~  213 (215)
T TIGR02187       187 -----VP--K-IVINKGVEE---FVGAY----PEEQFLEYIL  213 (215)
T ss_pred             -----CC--E-EEEecCCEE---EECCC----CHHHHHHHHH
Confidence                 99  4 556677763   55532    2344555443

This family of archaeal proteins contains a C-terminal domain with homology to bacterial and eukaryotic glutaredoxins, including a CPYC motif. There is an N-terminal domain which has even more distant homology to glutaredoxins. The name "glutaredoxin" may be inappropriate in the sense of working in tandem with glutathione and glutathione reductase which may not be present in the archaea. The overall domain structure appears to be related to bacterial alkylhydroperoxide reductases, but the homology may be distant enough that the function of this family is wholly different.

>TIGR01130 ER_PDI_fam protein disulfide isomerases, eukaryotic

Probab=98.29  E-value=4.4e-06  Score=73.41  Aligned_cols=87  Identities=20%  Similarity=0.357  Sum_probs=62.6

Q ss_pred             CCCcEEEEEEcCCCChhhHHHHHHHHHHHHHHHH-c-CcEEEEEeCCCHHHHHHHHHHcCCCeEEEEcCChhHHHHhCCC
Q 028030           93 KGKPVVVYFYPADETPGCTKQACAFRDSYEKFKK-A-GAEVIGISGDDSSSHKAFAKKYRLPYTLLSDEGNKVRKEWGVP  170 (215)
Q Consensus        93 ~gk~~ll~f~~a~~C~~C~~~~~~l~~l~~~~~~-~-~v~vv~vs~d~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~g~~  170 (215)
                      .++.+||.|| ++||++|+...|.+.++++.+++ . ++.++.|..+..+                      +.. +++.
T Consensus       363 ~~~~vlv~f~-a~wC~~C~~~~p~~~~~~~~~~~~~~~i~~~~id~~~n~----------------------~~~-~~i~  418 (462)
T TIGR01130       363 ETKDVLVEFY-APWCGHCKNLAPIYEELAEKYKDAESDVVIAKMDATAND----------------------VPP-FEVE  418 (462)
T ss_pred             CCCeEEEEEE-CCCCHhHHHHHHHHHHHHHHhhcCCCcEEEEEEECCCCc----------------------cCC-CCcc
Confidence            4789999999 99999999999999999999987 2 5888888764321                      112 6666


Q ss_pred             ccCCCCCCccEEEEEcCCCcE-EEEEeCCCCCCccHHHHHHHHhc
Q 028030          171 ADFFGSLPGRQTYILDKNGVV-QLIYNNQFQPEKHIDETLKFLQS  214 (215)
Q Consensus       171 ~~~~g~~p~~~~~lid~~G~v-~~~~~g~~~~~~~~~~il~~l~~  214 (215)
                      .     +|  +++++.+++++ ...+.|.    ...+.+++.|++
T Consensus       419 ~-----~P--t~~~~~~~~~~~~~~~~g~----~~~~~l~~~l~~  452 (462)
T TIGR01130       419 G-----FP--TIKFVPAGKKSEPVPYDGD----RTLEDFSKFIAK  452 (462)
T ss_pred             c-----cC--EEEEEeCCCCcCceEecCc----CCHHHHHHHHHh
Confidence            5     88  89999766663 2345553    334566666653

Members of this family have at least two protein-disulfide domains, each similar to thioredoxin but with the redox-active disulfide in the motif PWCGHCK, and an ER retention signal at the extreme C-terminus (KDEL, HDEL, and similar motifs).

>smart00594 UAS UAS domain

Probab=98.29  E-value=6.7e-06  Score=59.59  Aligned_cols=88  Identities=14%  Similarity=0.221  Sum_probs=61.0

Q ss_pred             CCCcEEEEEEcCCCChhhHHHHHHH---HHHHHHHHHcCcEEEEEeCCCHHHHHHHHHHcCCCeEEEEcCChhHHHHhCC
Q 028030           93 KGKPVVVYFYPADETPGCTKQACAF---RDSYEKFKKAGAEVIGISGDDSSSHKAFAKKYRLPYTLLSDEGNKVRKEWGV  169 (215)
Q Consensus        93 ~gk~~ll~f~~a~~C~~C~~~~~~l---~~l~~~~~~~~v~vv~vs~d~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~g~  169 (215)
                      .+|.++|+|+ +.||+.|......+   .++.+.+. +++.++.+..++.+                   ..++.+.|++
T Consensus        26 ~~K~~lv~~~-~~~c~~c~~~~r~vl~~~~V~~~i~-~~fv~~~~dv~~~e-------------------g~~l~~~~~~   84 (122)
T smart00594       26 QRRLLWLYLH-SQDSPDSQVFNRDVLCNEAVKSLIR-ENFIFWQVDVDTSE-------------------GQRVSQFYKL   84 (122)
T ss_pred             hcCCEEEEEe-CCCCchHHHHHHHHccCHHHHHHHH-cCEEEEEecCCChh-------------------HHHHHHhcCc
Confidence            5799999999 99999999877654   22333333 35666667665554                   2567778888


Q ss_pred             CccCCCCCCccEEEEEcCCC-----cEEEEEeCCCCCCccHHHHHHHH
Q 028030          170 PADFFGSLPGRQTYILDKNG-----VVQLIYNNQFQPEKHIDETLKFL  212 (215)
Q Consensus       170 ~~~~~g~~p~~~~~lid~~G-----~v~~~~~g~~~~~~~~~~il~~l  212 (215)
                      ..     +|  +++++|++|     +++....|..    ..++++..|
T Consensus        85 ~~-----~P--~~~~l~~~~g~~~~~~~~~~~G~~----~~~~l~~~l  121 (122)
T smart00594       85 DS-----FP--YVAIVDPRTGQRVIEWVGVVEGEI----SPEELMTFL  121 (122)
T ss_pred             CC-----CC--EEEEEecCCCceeEEEeccccCCC----CHHHHHHhh
Confidence            76     89  999999998     4555566643    345555554

>KOG4498 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.28  E-value=1e-05  Score=61.78  Aligned_cols=135  Identities=15%  Similarity=0.209  Sum_probs=100.4

Q ss_pred             eCCCCCeeecCCc-CCCcEEEEEEcCCCChhhHHHHHHHHHHHHHHHHcCcEEEEEeCCCHHHHHHHHHHcCCCeEEEEc
Q 028030           80 KDQEGRNVSLSKF-KGKPVVVYFYPADETPGCTKQACAFRDSYEKFKKAGAEVIGISGDDSSSHKAFAKKYRLPYTLLSD  158 (215)
Q Consensus        80 ~~~~g~~~~l~~~-~gk~~ll~f~~a~~C~~C~~~~~~l~~l~~~~~~~~v~vv~vs~d~~~~~~~~~~~~~~~~~~~~d  158 (215)
                      -+..|+.+.+.++ +.+..+|.|.+...|-.|+.+...|.++..-+++.|+..|+|-.........+..+-.+.-.++.|
T Consensus        35 l~~rg~~vp~~~L~~~~~avV~~vRrpgCvlCR~~aadLa~l~~~ld~~Gv~Li~vg~g~~~~~~~f~~q~~f~gevylD  114 (197)
T KOG4498|consen   35 LDSRGESVPVTSLFKERSAVVAFVRRPGCVLCREEAADLASLKDLLDELGVVLIAVGPGSHVQFEDFWDQTYFSGEVYLD  114 (197)
T ss_pred             hhhcCceeehHHhhhcCCeEEEEeccCcEEEeHHHHHHHHHHHHHHHHhCCEEEEEeccceeecchhhcccCcceeEEEc
Confidence            5678899999987 678899999999999999999999999977888889999999765555556666666666677888


Q ss_pred             CChhHHHHhCCCcc------------------------CCC-CCCccEEEEEcCCCcEEEEEeCC-CCCCccHHHHHHHH
Q 028030          159 EGNKVRKEWGVPAD------------------------FFG-SLPGRQTYILDKNGVVQLIYNNQ-FQPEKHIDETLKFL  212 (215)
Q Consensus       159 ~~~~~~~~~g~~~~------------------------~~g-~~p~~~~~lid~~G~v~~~~~g~-~~~~~~~~~il~~l  212 (215)
                      ++.+++..++....                        ..| ..-+.-++++.+.|+|.+.+... .-+..+++.+++.+
T Consensus       115 ~~~~~Y~~le~k~~~~g~l~~g~~~~~~Ka~~~gv~gn~~gd~~~~gG~~~V~~G~~il~~h~dk~~gD~~~i~~Vl~v~  194 (197)
T KOG4498|consen  115 PHRGFYKPLEFKRAEMGFLRPGTDAAAVKAKAVGVEGNLEGDGLLSGGVLVVGRGKKILFIHVDKETGDHVPIDSVLQVV  194 (197)
T ss_pred             CccceechhhhhcccccccccccHHHHHHHhhcccCCCcccChHHhCCeEEEecCCeEEEEEecCCCCCCcCHHHHHHHh
Confidence            87776655544321                        001 11134678888888998887653 33447899999887


Q ss_pred             hc
Q 028030          213 QS  214 (215)
Q Consensus       213 ~~  214 (215)
                      ..
T Consensus       195 ~~  196 (197)
T KOG4498|consen  195 GK  196 (197)
T ss_pred             hc
Confidence            64

>COG0526 TrxA Thiol-disulfide isomerase and thioredoxins [Posttranslational modification, protein turnover, chaperones / Energy production and conversion]

Probab=98.27  E-value=2.5e-06  Score=59.44  Aligned_cols=48  Identities=38%  Similarity=0.607  Sum_probs=41.2

Q ss_pred             ecCCcCCCcEEEEEEcCCCChhhHHHHHHHHHHHHHHHHcCcEEEEEeCC
Q 028030           88 SLSKFKGKPVVVYFYPADETPGCTKQACAFRDSYEKFKKAGAEVIGISGD  137 (215)
Q Consensus        88 ~l~~~~gk~~ll~f~~a~~C~~C~~~~~~l~~l~~~~~~~~v~vv~vs~d  137 (215)
                      ....+.++++++.|| +.||++|+..+|.+.++.+++.. .+.++.+...
T Consensus        26 ~~~~~~~~~~~v~f~-~~~C~~C~~~~~~l~~~~~~~~~-~~~~~~i~~~   73 (127)
T COG0526          26 SLSELKGKPVLVDFW-APWCPPCRAEAPLLEELAEEYGG-DVEVVAVNVD   73 (127)
T ss_pred             ehhhcCCceEEEEEE-cCcCHHHHhhchhHHHHHHHhcC-CcEEEEEECC
Confidence            344445889999999 99999999999999999999886 5888888875

>cd01659 TRX_superfamily Thioredoxin (TRX) superfamily; a large, diverse group of proteins containing a TRX-fold

Probab=98.25  E-value=8.4e-06  Score=50.30  Aligned_cols=63  Identities=19%  Similarity=0.340  Sum_probs=46.8

Q ss_pred             EEEEEcCCCChhhHHHHHHHHHHHHHHHHcCcEEEEEeCCCHHHHHHHHHHcCCCeEEEEcCChhHHHHhCCCccCCCCC
Q 028030           98 VVYFYPADETPGCTKQACAFRDSYEKFKKAGAEVIGISGDDSSSHKAFAKKYRLPYTLLSDEGNKVRKEWGVPADFFGSL  177 (215)
Q Consensus        98 ll~f~~a~~C~~C~~~~~~l~~l~~~~~~~~v~vv~vs~d~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~g~~~~~~g~~  177 (215)
                      |+.|| ..||+.|....+.+.++  +....++.++.++.+......++                  ...+++..     .
T Consensus         1 l~~~~-~~~c~~c~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~------------------~~~~~~~~-----~   54 (69)
T cd01659           1 LVLFY-APWCPFCQALRPVLAEL--ALLNKGVKFEAVDVDEDPALEKE------------------LKRYGVGG-----V   54 (69)
T ss_pred             CEEEE-CCCChhHHhhhhHHHHH--HhhCCCcEEEEEEcCCChHHhhH------------------HHhCCCcc-----c
Confidence            57888 99999999999999998  45556799999998766544433                  33455544     7


Q ss_pred             CccEEEEEcCC
Q 028030          178 PGRQTYILDKN  188 (215)
Q Consensus       178 p~~~~~lid~~  188 (215)
                      |  ++++++++
T Consensus        55 P--~~~~~~~~   63 (69)
T cd01659          55 P--TLVVFGPG   63 (69)
T ss_pred             c--EEEEEeCC
Confidence            7  77777665

Many members contain a classic TRX domain with a redox active CXXC motif. They function as protein disulfide oxidoreductases (PDOs), altering the redox state of target proteins via the reversible oxidation of their active site dithiol. The PDO members of this superfamily include TRX, protein disulfide isomerase (PDI), tlpA-like, glutaredoxin, NrdH redoxin, and the bacterial Dsb (DsbA, DsbC, DsbG, DsbE, DsbDgamma) protein families. Members of the superfamily that do not function as PDOs but contain a TRX-fold domain include phosducins, peroxiredoxins and glutathione (GSH) peroxidases, SCO proteins, GSH transferases (GST, N-terminal domain), arsenic reductases, TRX-like ferredoxins and calsequestrin, among others.

>PF14595 Thioredoxin_9: Thioredoxin; PDB: 1Z6N_A

Probab=98.22  E-value=2e-06  Score=62.99  Aligned_cols=76  Identities=16%  Similarity=0.165  Sum_probs=46.4

Q ss_pred             CcCCCcEEEEEEcCCCChhhHHHHHHHHHHHHHHHHcCcEEEEEeCCCHHHHHHHHHHcCCCeEEEEcCChhHHHH---h
Q 028030           91 KFKGKPVVVYFYPADETPGCTKQACAFRDSYEKFKKAGAEVIGISGDDSSSHKAFAKKYRLPYTLLSDEGNKVRKE---W  167 (215)
Q Consensus        91 ~~~gk~~ll~f~~a~~C~~C~~~~~~l~~l~~~~~~~~v~vv~vs~d~~~~~~~~~~~~~~~~~~~~d~~~~~~~~---~  167 (215)
                      ....+..+++|. .+|||.|...+|.|.++++..+  ++++=.+..|+..                     ++...   .
T Consensus        38 ~~~~~~~ilvi~-e~WCgD~~~~vP~l~kiae~~p--~i~~~~i~rd~~~---------------------el~~~~lt~   93 (129)
T PF14595_consen   38 SIQKPYNILVIT-ETWCGDCARNVPVLAKIAEANP--NIEVRIILRDENK---------------------ELMDQYLTN   93 (129)
T ss_dssp             T--S-EEEEEE---TT-HHHHHHHHHHHHHHHH-T--TEEEEEE-HHHHH---------------------HHTTTTTT-
T ss_pred             hcCCCcEEEEEE-CCCchhHHHHHHHHHHHHHhCC--CCeEEEEEecCCh---------------------hHHHHHHhC
Confidence            344567899999 9999999999999999998865  4555555444332                     22222   2


Q ss_pred             CCCccCCCCCCccEEEEEcCCCcEEEEEeC
Q 028030          168 GVPADFFGSLPGRQTYILDKNGVVQLIYNN  197 (215)
Q Consensus       168 g~~~~~~g~~p~~~~~lid~~G~v~~~~~g  197 (215)
                      |...     +|  .++++|++|+++..|..
T Consensus        94 g~~~-----IP--~~I~~d~~~~~lg~wge  116 (129)
T PF14595_consen   94 GGRS-----IP--TFIFLDKDGKELGRWGE  116 (129)
T ss_dssp             SS-------SS--EEEEE-TT--EEEEEES
T ss_pred             CCee-----cC--EEEEEcCCCCEeEEEcC
Confidence            3333     88  99999999999999976

>PF04592 SelP_N: Selenoprotein P, N terminal region; InterPro: IPR007671 SelP is the only known eukaryotic selenoprotein that contains multiple selenocysteine (Sec) residues, and accounts for more than 50% of the selenium content of rat and human plasma []

Probab=98.22  E-value=2.4e-05  Score=62.03  Aligned_cols=115  Identities=18%  Similarity=0.238  Sum_probs=83.9

Q ss_pred             CCCCCCeEEeCCCCCeeecCCcCCCcEEEEEEcCCCChhhHHHHHHHHHHHHHHHHcC---cEEEEEeCCCH-HHHHHHH
Q 028030           71 GQAPPSFTLKDQEGRNVSLSKFKGKPVVVYFYPADETPGCTKQACAFRDSYEKFKKAG---AEVIGISGDDS-SSHKAFA  146 (215)
Q Consensus        71 g~~~P~f~l~~~~g~~~~l~~~~gk~~ll~f~~a~~C~~C~~~~~~l~~l~~~~~~~~---v~vv~vs~d~~-~~~~~~~  146 (215)
                      -.+.|.+++.+.+    ...+..|+++||-+. -.+|..|...+..|..|..++.+.|   |.++.|+.-++ .....+.
T Consensus         7 C~~~p~W~i~~~~----pm~~~~G~VtvVALL-~asc~~c~~qa~~le~Lr~kL~~~g~~~I~f~vVN~~~~~s~~~~~~   81 (238)
T PF04592_consen    7 CKPPPPWKIGGQD----PMLNSLGHVTVVALL-QASCYFCLLQASRLEDLREKLENEGLSNISFMVVNHQGEHSRLKYWE   81 (238)
T ss_pred             CCCCCCceECCch----HhhhcCCcEEeeeeh-hhhhHHHHHHHHHHHHHHHHHHHCCCCceEEEEEcCCCcchhHHHHH
Confidence            3567777775433    445678999999999 6689999999999999999999875   67777876433 3333223


Q ss_pred             --HHcCCCeEEEE-c-CChhHHHHhCCCccCCCCCCccEEEEEcCCCcEEEEEeCC
Q 028030          147 --KKYRLPYTLLS-D-EGNKVRKEWGVPADFFGSLPGRQTYILDKNGVVQLIYNNQ  198 (215)
Q Consensus       147 --~~~~~~~~~~~-d-~~~~~~~~~g~~~~~~g~~p~~~~~lid~~G~v~~~~~g~  198 (215)
                        ++..-.++++. | ...+++..++-..+        -++|+|+-|++.+...-+
T Consensus        82 l~~r~~~~ipVyqq~~~q~dvW~~L~G~kd--------D~~iyDRCGrL~~~i~~P  129 (238)
T PF04592_consen   82 LKRRVSEHIPVYQQDENQPDVWELLNGSKD--------DFLIYDRCGRLTYHIPLP  129 (238)
T ss_pred             HHHhCCCCCceecCCccccCHHHHhCCCcC--------cEEEEeccCcEEEEecCc
Confidence              23333488885 3 45788988888752        599999999999876543

It is thought to be glycosylated []. SelP may have antioxidant properties. It can attach to epithelial cells, and may protect vascular endothelial cells against peroxynitrite toxicity []. The high selenium content of SelP suggests that it may be involved in selenium intercellular transport or storage []. The promoter structure of bovine SelP suggests that it may be involved in countering heavy metal intoxication, and may also have a developmental function []. The N-terminal region of SelP can exist independently of the C-terminal region. Zebrafish selenoprotein Pb (Q98SV0 from SWISSPROT) lacks the C-terminal Sec-rich region, and a protein encoded by the rat SelP gene and lacking this region has also been reported []. The N-terminal region contains a conserved SecxxCys motif, which is similar to the CysxxCys found in thioredoxins. It is speculated that the N-terminal region may adopt a thioredoxin fold and catalyse redox reactions []. The N-terminal region also contains a His-rich region, which is thought to mediate heparin binding. Binding to heparan proteoglycans could account for the membrane binding properties of SelP []. The function of the bacterial members of this family is uncharacterised.; GO: 0008430 selenium binding

>COG4312 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=98.21  E-value=2.4e-05  Score=61.10  Aligned_cols=121  Identities=17%  Similarity=0.371  Sum_probs=91.5

Q ss_pred             CeEEeCCCCCeeecCCc-CCCcEEEE--EEc----CCCChhhHHHHHHHHHHHHHHHHcCcEEEEEeCCCHHHHHHHHHH
Q 028030           76 SFTLKDQEGRNVSLSKF-KGKPVVVY--FYP----ADETPGCTKQACAFRDSYEKFKKAGAEVIGISGDDSSSHKAFAKK  148 (215)
Q Consensus        76 ~f~l~~~~g~~~~l~~~-~gk~~ll~--f~~----a~~C~~C~~~~~~l~~l~~~~~~~~v~vv~vs~d~~~~~~~~~~~  148 (215)
                      ++.+.+.+|+ .+|.|+ .||-.||+  |.+    ...|+.|...+..+.-....+...++.++.|+--.-+++..|.+.
T Consensus        54 ~Y~Fe~~~G~-~sLadLF~grsqLIvYhfmF~P~~~~~C~gCS~laD~~dGa~~HL~~~dv~lv~VsRAPl~~l~~~k~r  132 (247)
T COG4312          54 DYVFETENGK-KSLADLFGGRSQLIVYHFMFGPGWDHGCPGCSFLADHWDGAVAHLEHHDVTLVAVSRAPLEELVAYKRR  132 (247)
T ss_pred             eeEeecCCcc-hhHHHHhCCCceEEEEEEecCCCccCCCCchhhHHhhhhhhhhhHhhcCceEEEEecCcHHHHHHHHHh
Confidence            5566778886 699887 77654443  332    346999999999998888888888999999999999999999999


Q ss_pred             cCCCeEEEEcCChhHHHHhCCCccCC------------------CCCCccEEEEEcCCCcEEEEEeC
Q 028030          149 YRLPYTLLSDEGNKVRKEWGVPADFF------------------GSLPGRQTYILDKNGVVQLIYNN  197 (215)
Q Consensus       149 ~~~~~~~~~d~~~~~~~~~g~~~~~~------------------g~~p~~~~~lid~~G~v~~~~~g  197 (215)
                      +|+.|+.++..++.+-..|.+.....                  .-.|+-.+|.-+.+|+|-..+..
T Consensus       133 mGW~f~w~Ss~~s~Fn~Df~vsf~~~q~~~G~~~yn~~~~~~~~rd~~G~~vF~~~e~g~v~~ty~~  199 (247)
T COG4312         133 MGWQFPWVSSTDSDFNRDFQVSFTEDQQAPGVVVYNFERTPPTGRDLPGISVFYSDEDGRVYHTYSQ  199 (247)
T ss_pred             cCCcceeEeccCcccccccccccchhhccCceeEeecccCCCccccCCCeeEEEEcCCCcccccccc
Confidence            99999999988888877786631100                  12344467777888888766543

>cd03026 AhpF_NTD_C TRX-GRX-like family, Alkyl hydroperoxide reductase F subunit (AhpF) N-terminal domain (NTD) subfamily, C-terminal TRX-fold subdomain; AhpF is a homodimeric flavoenzyme which catalyzes the NADH-dependent reduction of the peroxiredoxin AhpC, which then reduces hydrogen peroxide and organic hydroperoxides

Probab=98.19  E-value=6.4e-06  Score=56.33  Aligned_cols=71  Identities=17%  Similarity=0.120  Sum_probs=53.8

Q ss_pred             CCcCCCcEEEEEEcCCCChhhHHHHHHHHHHHHHHHHcCcEEEEEeCCCHHHHHHHHHHcCCCeEEEEcCChhHHHHhCC
Q 028030           90 SKFKGKPVVVYFYPADETPGCTKQACAFRDSYEKFKKAGAEVIGISGDDSSSHKAFAKKYRLPYTLLSDEGNKVRKEWGV  169 (215)
Q Consensus        90 ~~~~gk~~ll~f~~a~~C~~C~~~~~~l~~l~~~~~~~~v~vv~vs~d~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~g~  169 (215)
                      .++++.+.+..|+ +.||++|....+.+.++.+++.  ++.+.-+..+                     ...+++..||+
T Consensus         8 ~~l~~pv~i~~F~-~~~C~~C~~~~~~~~~l~~~~~--~i~~~~vd~~---------------------~~~e~a~~~~V   63 (89)
T cd03026           8 RRLNGPINFETYV-SLSCHNCPDVVQALNLMAVLNP--NIEHEMIDGA---------------------LFQDEVEERGI   63 (89)
T ss_pred             HhcCCCEEEEEEE-CCCCCCcHHHHHHHHHHHHHCC--CceEEEEEhH---------------------hCHHHHHHcCC
Confidence            4567788888898 9999999999999999987765  4666666543                     33467778999


Q ss_pred             CccCCCCCCccEEEEEcCCCcEEEE
Q 028030          170 PADFFGSLPGRQTYILDKNGVVQLI  194 (215)
Q Consensus       170 ~~~~~g~~p~~~~~lid~~G~v~~~  194 (215)
                      ..     +|  ++ ++  ||+++..
T Consensus        64 ~~-----vP--t~-vi--dG~~~~~   78 (89)
T cd03026          64 MS-----VP--AI-FL--NGELFGF   78 (89)
T ss_pred             cc-----CC--EE-EE--CCEEEEe
Confidence            87     99  55 45  6887764

AhpF contains an NTD containing two contiguous TRX-fold subdomains similar to Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO). It also contains a catalytic core similar to TRX reductase containing FAD and NADH binding domains with an active site disulfide. The proposed mechanism of action of AhpF is similar to a TRX/TRX reductase system. The flow of reducing equivalents goes from NADH - catalytic core of AhpF - NTD of AhpF - AhpC - peroxide substrates. The catalytic CXXC motif of the NTD of AhpF is contained in its C-terminal TRX subdomain.

>PF13899 Thioredoxin_7: Thioredoxin-like; PDB: 2LST_A 3PH9_A 1UC7_A 2JU5_A 1VRS_D 2FWG_A 2FWF_A 2FWH_A 2FWE_A 3FK8_A

Probab=98.14  E-value=3.7e-05  Score=51.57  Aligned_cols=47  Identities=30%  Similarity=0.443  Sum_probs=36.1

Q ss_pred             CCCcEEEEEEcCCCChhhHHHHHHH---HHHHHHHHHcCcEEEEEeCCCHHH
Q 028030           93 KGKPVVVYFYPADETPGCTKQACAF---RDSYEKFKKAGAEVIGISGDDSSS  141 (215)
Q Consensus        93 ~gk~~ll~f~~a~~C~~C~~~~~~l---~~l~~~~~~~~v~vv~vs~d~~~~  141 (215)
                      .||+++|+|+ +.||+.|+..-..+   .++.+.+. +++.++-|..++...
T Consensus        16 ~~kpvlv~f~-a~wC~~C~~l~~~~~~~~~v~~~~~-~~fv~v~vd~~~~~~   65 (82)
T PF13899_consen   16 EGKPVLVDFG-ADWCPPCKKLEREVFSDPEVQEALN-KNFVLVKVDVDDEDP   65 (82)
T ss_dssp             HTSEEEEEEE-TTTTHHHHHHHHHTTTSHHHHHHHH-HCSEEEEEETTTHHH
T ss_pred             cCCCEEEEEE-CCCCHhHHHHHHHHcCCHHHHHHHH-CCEEEEEEEcCCCCh
Confidence            5899999999 99999999887777   33433344 468999888876654

...

>KOG0190 consensus Protein disulfide isomerase (prolyl 4-hydroxylase beta subunit) [Posttranslational modification, protein turnover, chaperones]

Probab=98.06  E-value=1.3e-05  Score=70.30  Aligned_cols=85  Identities=22%  Similarity=0.340  Sum_probs=62.5

Q ss_pred             CcEEEEEEcCCCChhhHHHHHHHHHHHHHHHHc--CcEEEEEeCCCHHHHHHHHHHcCCCeEEEEcCChhHHHHhCCCcc
Q 028030           95 KPVVVYFYPADETPGCTKQACAFRDSYEKFKKA--GAEVIGISGDDSSSHKAFAKKYRLPYTLLSDEGNKVRKEWGVPAD  172 (215)
Q Consensus        95 k~~ll~f~~a~~C~~C~~~~~~l~~l~~~~~~~--~v~vv~vs~d~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~g~~~~  172 (215)
                      ..++|.|| |.||+.|+...|.+.+.+..+++.  .+.+.-|..                     ..++.+...|++.+ 
T Consensus        43 ~~vlVeFY-APWCghck~LaPey~kAA~~Lke~~s~i~LakVDa---------------------t~~~~~~~~y~v~g-   99 (493)
T KOG0190|consen   43 EFVLVEFY-APWCGHCKALAPEYEKAATELKEEGSPVKLAKVDA---------------------TEESDLASKYEVRG-   99 (493)
T ss_pred             ceEEEEEE-chhhhhhhhhCcHHHHHHHHhhccCCCceeEEeec---------------------chhhhhHhhhcCCC-
Confidence            56889999 999999999999999999999986  344444421                     23478889999998 


Q ss_pred             CCCCCCccEEEEEcCCCcEEEEEeCCCCCCccHHHHHHHHh
Q 028030          173 FFGSLPGRQTYILDKNGVVQLIYNNQFQPEKHIDETLKFLQ  213 (215)
Q Consensus       173 ~~g~~p~~~~~lid~~G~v~~~~~g~~~~~~~~~~il~~l~  213 (215)
                          .|   ++.|-++|+....+.|..    ..+.|+.-|+
T Consensus       100 ----yP---TlkiFrnG~~~~~Y~G~r----~adgIv~wl~  129 (493)
T KOG0190|consen  100 ----YP---TLKIFRNGRSAQDYNGPR----EADGIVKWLK  129 (493)
T ss_pred             ----CC---eEEEEecCCcceeccCcc----cHHHHHHHHH
Confidence                99   555668999866666643    3445554443

>cd02991 UAS_ETEA UAS family, ETEA subfamily; composed of proteins similar to human ETEA protein, the translation product of a highly expressed gene in the T-cells and eosinophils of atopic dermatitis patients compared with those of normal individuals

Probab=97.97  E-value=7.9e-05  Score=53.52  Aligned_cols=92  Identities=15%  Similarity=0.203  Sum_probs=66.5

Q ss_pred             cCCCcEEEEEEcCC----CChhhHHHHH--HHHHHHHHHHHcCcEEEEEeCCCHHHHHHHHHHcCCCeEEEEcCChhHHH
Q 028030           92 FKGKPVVVYFYPAD----ETPGCTKQAC--AFRDSYEKFKKAGAEVIGISGDDSSSHKAFAKKYRLPYTLLSDEGNKVRK  165 (215)
Q Consensus        92 ~~gk~~ll~f~~a~----~C~~C~~~~~--~l~~l~~~~~~~~v~vv~vs~d~~~~~~~~~~~~~~~~~~~~d~~~~~~~  165 (215)
                      -.+|.++|+++ ++    ||..|+..+.  .+.+.   + +.++.+++.++++++                   ..+++.
T Consensus        15 ~e~K~llVylh-s~~~~~~~~fc~~~l~~~~v~~~---l-n~~fv~w~~dv~~~e-------------------g~~la~   70 (116)
T cd02991          15 QELRFLLVYLH-GDDHQDTDEFCRNTLCAPEVIEY---I-NTRMLFWACSVAKPE-------------------GYRVSQ   70 (116)
T ss_pred             hhCCEEEEEEe-CCCCccHHHHHHHHcCCHHHHHH---H-HcCEEEEEEecCChH-------------------HHHHHH
Confidence            35799999999 88    8889976552  23332   2 346777778777665                   267888


Q ss_pred             HhCCCccCCCCCCccEEEEE---cCCCcEEEEEeCCCCCCccHHHHHHHHhc
Q 028030          166 EWGVPADFFGSLPGRQTYIL---DKNGVVQLIYNNQFQPEKHIDETLKFLQS  214 (215)
Q Consensus       166 ~~g~~~~~~g~~p~~~~~li---d~~G~v~~~~~g~~~~~~~~~~il~~l~~  214 (215)
                      .+++..     +|  ...++   +.+.+|+.+..|...+++.+..+...+++
T Consensus        71 ~l~~~~-----~P--~~~~l~~~~~~~~vv~~i~G~~~~~~ll~~L~~~~~~  115 (116)
T cd02991          71 ALRERT-----YP--FLAMIMLKDNRMTIVGRLEGLIQPEDLINRLTFIMDA  115 (116)
T ss_pred             HhCCCC-----CC--EEEEEEecCCceEEEEEEeCCCCHHHHHHHHHHHHhc
Confidence            888886     89  88888   77778899999987766666655555543

ETEA shows homology to Fas-associated factor 1 (FAF1); both containing UAS and UBX (ubiquitin-associated) domains. Compared to FAF1, however, ETEA lacks the ubiquitin-associated UBA domain and a nuclear targeting domain. The function of ETEA is still unknown. A yeast two-hybrid assay showed that it can interact with Fas. Because of its homology to FAF1, it is postulated that ETEA could be involved in modulating Fas-mediated apoptosis of T-cells and eosinophils of atopic dermatitis patients, making them more resistant to apoptosis.

>COG4232 Thiol:disulfide interchange protein [Posttranslational modification, protein turnover, chaperones / Energy production and conversion]

Probab=97.75  E-value=5.7e-05  Score=67.20  Aligned_cols=81  Identities=21%  Similarity=0.265  Sum_probs=56.6

Q ss_pred             cCCCcEEEEEEcCCCChhhHHHHHHH-HHHHHHHHHcCcEEEEEeC--CCHHHHHHHHHHcCCCeEEEEcCChhHHHHhC
Q 028030           92 FKGKPVVVYFYPADETPGCTKQACAF-RDSYEKFKKAGAEVIGISG--DDSSSHKAFAKKYRLPYTLLSDEGNKVRKEWG  168 (215)
Q Consensus        92 ~~gk~~ll~f~~a~~C~~C~~~~~~l-~~l~~~~~~~~v~vv~vs~--d~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~g  168 (215)
                      -++|+|+|+|+ |+||-.|+..-+.. .+-....+-.|+..+-+..  ++++.                   .++.++||
T Consensus       472 ~~~~pVmlDfy-AdWCvtCK~~e~~tfsd~~v~~~~~~~vlLqaDvT~~~p~~-------------------~~lLk~~~  531 (569)
T COG4232         472 AKAKPVMLDFY-ADWCVTCKENEKYTFSDPQVQQALQDVVLLQADVTANDPAI-------------------TALLKRLG  531 (569)
T ss_pred             CCCCcEEEeee-hhHHHHhHhhhhhccCcHHHHHhcCCeEEEEeeecCCCHHH-------------------HHHHHHcC
Confidence            34579999999 99999999655543 4455555555677776543  44442                   46667788


Q ss_pred             CCccCCCCCCccEEEEEcCCCcEEEEEeCCC
Q 028030          169 VPADFFGSLPGRQTYILDKNGVVQLIYNNQF  199 (215)
Q Consensus       169 ~~~~~~g~~p~~~~~lid~~G~v~~~~~g~~  199 (215)
                      +-+     .|  .+++++++|+=.....|-.
T Consensus       532 ~~G-----~P--~~~ff~~~g~e~~~l~gf~  555 (569)
T COG4232         532 VFG-----VP--TYLFFGPQGSEPEILTGFL  555 (569)
T ss_pred             CCC-----CC--EEEEECCCCCcCcCCccee
Confidence            877     88  9999999998766655543

>COG2143 Thioredoxin-related protein [Posttranslational modification, protein turnover, chaperones]

Probab=97.68  E-value=0.00021  Score=53.17  Aligned_cols=107  Identities=15%  Similarity=0.146  Sum_probs=70.3

Q ss_pred             cCCCcEEEEEEcCCCChhhHHHHHHH---HHHHHHHHHcCcEEEEEeCCCHHHHHHHHHHcCCCeEEEEcCChhHHHHhC
Q 028030           92 FKGKPVVVYFYPADETPGCTKQACAF---RDSYEKFKKAGAEVIGISGDDSSSHKAFAKKYRLPYTLLSDEGNKVRKEWG  168 (215)
Q Consensus        92 ~~gk~~ll~f~~a~~C~~C~~~~~~l---~~l~~~~~~~~v~vv~vs~d~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~g  168 (215)
                      -.+|+.++.|- ...|++|.+.-..+   .++++-+++ .+.++.+...+.+.+.-.     ..-..-.-...++++.|+
T Consensus        40 ~~~Kylllmfe-s~~C~yC~~~KKd~~~~krlrEylk~-hf~~~~l~i~~skpv~f~-----~g~kee~~s~~ELa~kf~  112 (182)
T COG2143          40 PNDKYLLLMFE-SNGCSYCERFKKDLKNVKRLREYLKE-HFSAYYLNISYSKPVLFK-----VGDKEEKMSTEELAQKFA  112 (182)
T ss_pred             ccCcEEEEEEc-CCCChHHHHHHHhhcchHHHHHHHhh-CeEEEEEEeccCcceEee-----cCceeeeecHHHHHHHhc
Confidence            36799999999 99999997655544   445555554 477777765333211000     000001112358999999


Q ss_pred             CCccCCCCCCccEEEEEcCCCcEEEEEeCCCCCCccHHHHHHHHh
Q 028030          169 VPADFFGSLPGRQTYILDKNGVVQLIYNNQFQPEKHIDETLKFLQ  213 (215)
Q Consensus       169 ~~~~~~g~~p~~~~~lid~~G~v~~~~~g~~~~~~~~~~il~~l~  213 (215)
                      ++.     .|  +.++.|++|+-+...+|-.+++ ..-.+++.+.
T Consensus       113 vrs-----tP--tfvFfdk~Gk~Il~lPGY~ppe-~Fl~vlkYVa  149 (182)
T COG2143         113 VRS-----TP--TFVFFDKTGKTILELPGYMPPE-QFLAVLKYVA  149 (182)
T ss_pred             ccc-----Cc--eEEEEcCCCCEEEecCCCCCHH-HHHHHHHHHH
Confidence            997     78  9999999999999999876554 3555666554

>KOG0191 consensus Thioredoxin/protein disulfide isomerase [Posttranslational modification, protein turnover, chaperones]

Probab=97.68  E-value=0.00016  Score=62.47  Aligned_cols=66  Identities=20%  Similarity=0.394  Sum_probs=51.6

Q ss_pred             CCCcEEEEEEcCCCChhhHHHHHHHHHHHHHHHHcCcEEEEEeCCCHHHHHHHHHHcCCCeEEEEcCChhHHHHhCCCcc
Q 028030           93 KGKPVVVYFYPADETPGCTKQACAFRDSYEKFKKAGAEVIGISGDDSSSHKAFAKKYRLPYTLLSDEGNKVRKEWGVPAD  172 (215)
Q Consensus        93 ~gk~~ll~f~~a~~C~~C~~~~~~l~~l~~~~~~~~v~vv~vs~d~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~g~~~~  172 (215)
                      .++..+|.|| ++||++|.+..+.+.++...+++. +.+..|.                     .+.+..+.+.|++++ 
T Consensus        46 ~~~~~~v~fy-apwc~~c~~l~~~~~~~~~~l~~~-~~~~~vd---------------------~~~~~~~~~~y~i~g-  101 (383)
T KOG0191|consen   46 DDSPWLVEFY-APWCGHCKKLAPTYKKLAKALKGK-VKIGAVD---------------------CDEHKDLCEKYGIQG-  101 (383)
T ss_pred             cCCceEEEEE-CCCCcchhhhchHHHHHHHHhcCc-eEEEEeC---------------------chhhHHHHHhcCCcc-
Confidence            3578999999 999999999999999998888862 4444454                     245567888888887 


Q ss_pred             CCCCCCccEEEEEcCC
Q 028030          173 FFGSLPGRQTYILDKN  188 (215)
Q Consensus       173 ~~g~~p~~~~~lid~~  188 (215)
                          .|  +..++.++
T Consensus       102 ----fP--tl~~f~~~  111 (383)
T KOG0191|consen  102 ----FP--TLKVFRPG  111 (383)
T ss_pred             ----Cc--EEEEEcCC
Confidence                88  67767655

>COG3054 Predicted transcriptional regulator [General function prediction only]

Probab=97.63  E-value=0.00015  Score=53.47  Aligned_cols=141  Identities=20%  Similarity=0.347  Sum_probs=88.6

Q ss_pred             ccCCCCCCCCCeEEeC-----CCC-----CeeecCCcCCCcEEEEEEcCCCChhhHHHHHHHHHHH-HHHHHcCcEEEE-
Q 028030           66 AKVSKGQAPPSFTLKD-----QEG-----RNVSLSKFKGKPVVVYFYPADETPGCTKQACAFRDSY-EKFKKAGAEVIG-  133 (215)
Q Consensus        66 ~~~~~g~~~P~f~l~~-----~~g-----~~~~l~~~~gk~~ll~f~~a~~C~~C~~~~~~l~~l~-~~~~~~~v~vv~-  133 (215)
                      -+++.|.++|..-+.+     .+|     +.+.-+++.||+.+|.-. +--...-.+..+-+..+. .+++....+-.. 
T Consensus        21 Hnlq~~q~vp~VgV~~~GEl~l~~~~~~y~~W~SAqL~GKvRV~~hi-AGRtsaKE~Na~lieaIk~a~fp~~~YQTTTI   99 (184)
T COG3054          21 HNLQLGQRVPPVGVADRGELVLDKDQFSYKTWNSAQLVGKVRVLQHI-AGRTSAKEKNATLIEAIKSAKFPHDRYQTTTI   99 (184)
T ss_pred             hhcccCCcCCCccccccceEEecCcceeecccchhhccchhhhhhhh-hcccchhhhchHHHHHHHhccCChHHceeeEE
Confidence            3567777777665543     233     445557788999999988 554444444555555543 244433455555 


Q ss_pred             EeCCCHH-----HHHHHHHHcC--CCe-EEEEcCChhHHHHhCCCccCCCCCCccEEEEEcCCCcEEEEEeCCCCCCccH
Q 028030          134 ISGDDSS-----SHKAFAKKYR--LPY-TLLSDEGNKVRKEWGVPADFFGSLPGRQTYILDKNGVVQLIYNNQFQPEKHI  205 (215)
Q Consensus       134 vs~d~~~-----~~~~~~~~~~--~~~-~~~~d~~~~~~~~~g~~~~~~g~~p~~~~~lid~~G~v~~~~~g~~~~~~~~  205 (215)
                      |+.||+-     -++.-++..+  ++| .++.|..+....+|++..+      ...++++|++|+|.+...|... +..+
T Consensus       100 iN~DDAi~GtgmFVkssae~~Kke~pwSq~vlD~~gvak~AWqL~e~------~SaivVlDk~G~VkfvkeGaLt-~aev  172 (184)
T COG3054         100 INTDDAIPGTGMFVKSSAESNKKEYPWSQFVLDSNGVAKNAWQLKEE------SSAVVVLDKDGRVKFVKEGALT-QAEV  172 (184)
T ss_pred             eccCCccccccceeecchhhccccCCceeeEEccchhhhhhhccccc------cceEEEEcCCCcEEEEecCCcc-HHHH
Confidence            5666641     2233333222  333 3567888866779999853      3389999999999999988654 4567


Q ss_pred             HHHHHHHhc
Q 028030          206 DETLKFLQS  214 (215)
Q Consensus       206 ~~il~~l~~  214 (215)
                      ++++.+|.+
T Consensus       173 Q~Vi~ll~~  181 (184)
T COG3054         173 QQVIDLLQK  181 (184)
T ss_pred             HHHHHHHHH
Confidence            888887753

>PF06110 DUF953: Eukaryotic protein of unknown function (DUF953); InterPro: IPR010357 This family consists of several hypothetical eukaryotic proteins of unknown function that are thioredoxin-like

Probab=97.57  E-value=0.00057  Score=49.15  Aligned_cols=77  Identities=18%  Similarity=0.349  Sum_probs=51.0

Q ss_pred             CCCcEEEEEEc------CCCChhhHHHHHHHHHHHHHHHHcCcEEEEEeCCCHHHHHHHHHHcCCCeEEEEcCChhHHH-
Q 028030           93 KGKPVVVYFYP------ADETPGCTKQACAFRDSYEKFKKAGAEVIGISGDDSSSHKAFAKKYRLPYTLLSDEGNKVRK-  165 (215)
Q Consensus        93 ~gk~~ll~f~~------a~~C~~C~~~~~~l~~l~~~~~~~~v~vv~vs~d~~~~~~~~~~~~~~~~~~~~d~~~~~~~-  165 (215)
                      .|++++|.|+.      .+|||.|....|.+.+.....++ +..+|.|.+.+...++              |++..... 
T Consensus        18 ~~~~~fl~F~gs~d~~g~sWCPDC~~aep~v~~~f~~~~~-~~~lv~v~VG~r~~Wk--------------dp~n~fR~~   82 (119)
T PF06110_consen   18 SGKPLFLLFTGSKDETGQSWCPDCVAAEPVVEKAFKKAPE-NARLVYVEVGDRPEWK--------------DPNNPFRTD   82 (119)
T ss_dssp             TTSEEEEEEE--B-TTS-BSSHHHHHHHHHHHHHHHH-ST-TEEEEEEE---HHHHC---------------TTSHHHH-
T ss_pred             CCCeEEEEEEccCCCCCCcccHHHHHHHHHHHHHHHhCCC-CceEEEEEcCCHHHhC--------------CCCCCceEc
Confidence            46888888882      25999999999999998777544 6899999888776642              45555555 


Q ss_pred             -HhCCCccCCCCCCccEEEEEcCCCcE
Q 028030          166 -EWGVPADFFGSLPGRQTYILDKNGVV  191 (215)
Q Consensus       166 -~~g~~~~~~g~~p~~~~~lid~~G~v  191 (215)
                       .+.+..     +|  +.+-.+..+++
T Consensus        83 p~~~l~~-----IP--TLi~~~~~~rL  102 (119)
T PF06110_consen   83 PDLKLKG-----IP--TLIRWETGERL  102 (119)
T ss_dssp             -CC---S-----SS--EEEECTSS-EE
T ss_pred             ceeeeee-----cc--eEEEECCCCcc
Confidence             578887     99  88888766553

; PDB: 1V9W_A 1WOU_A.

>KOG0190 consensus Protein disulfide isomerase (prolyl 4-hydroxylase beta subunit) [Posttranslational modification, protein turnover, chaperones]

Probab=97.56  E-value=0.00023  Score=62.69  Aligned_cols=41  Identities=29%  Similarity=0.444  Sum_probs=35.1

Q ss_pred             CCCcEEEEEEcCCCChhhHHHHHHHHHHHHHHHHc-CcEEEEE
Q 028030           93 KGKPVVVYFYPADETPGCTKQACAFRDSYEKFKKA-GAEVIGI  134 (215)
Q Consensus        93 ~gk~~ll~f~~a~~C~~C~~~~~~l~~l~~~~~~~-~v~vv~v  134 (215)
                      .+|-|||.|+ |.||++|++..|.+++|+++|++. ++.|.-+
T Consensus       383 e~KdVLvEfy-APWCgHCk~laP~~eeLAe~~~~~~~vviAKm  424 (493)
T KOG0190|consen  383 EGKDVLVEFY-APWCGHCKALAPIYEELAEKYKDDENVVIAKM  424 (493)
T ss_pred             cccceEEEEc-CcccchhhhhhhHHHHHHHHhcCCCCcEEEEe
Confidence            4688999999 999999999999999999999986 4444445

>cd03007 PDI_a_ERp29_N PDIa family, endoplasmic reticulum protein 29 (ERp29) subfamily; ERp29 is a ubiquitous ER-resident protein expressed in high levels in secretory cells

Probab=97.51  E-value=0.00068  Score=48.56  Aligned_cols=92  Identities=21%  Similarity=0.239  Sum_probs=56.6

Q ss_pred             CCCcEEEEEEcCCCChhhHHHHHHHHHHHHHHHHc--CcEEEEEeCCCHHHHHHHHHHcCCCeEEEEcCChhHHHHhCCC
Q 028030           93 KGKPVVVYFYPADETPGCTKQACAFRDSYEKFKKA--GAEVIGISGDDSSSHKAFAKKYRLPYTLLSDEGNKVRKEWGVP  170 (215)
Q Consensus        93 ~gk~~ll~f~~a~~C~~C~~~~~~l~~l~~~~~~~--~v~vv~vs~d~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~g~~  170 (215)
                      +.+.+||.|+ ++| |.|.+ +|...+|+.++.+.  .+.|--|..++..+                .++.++...||+.
T Consensus        17 ~~~~vlV~F~-A~~-Pwc~k-~~~~~~LA~e~~~aa~~v~lakVd~~d~~~----------------~~~~~L~~~y~I~   77 (116)
T cd03007          17 KFKYSLVKFD-TAY-PYGEK-HEAFTRLAESSASATDDLLVAEVGIKDYGE----------------KLNMELGERYKLD   77 (116)
T ss_pred             cCCcEEEEEe-CCC-CCCCC-hHHHHHHHHHHHhhcCceEEEEEecccccc----------------hhhHHHHHHhCCC
Confidence            3578999999 955 34444 47778888777543  24444466544211                1246788999998


Q ss_pred             --ccCCCCCCccEEEEEcCCCc--EEEEEeCCCCCCccHHHHHHHHhc
Q 028030          171 --ADFFGSLPGRQTYILDKNGV--VQLIYNNQFQPEKHIDETLKFLQS  214 (215)
Q Consensus       171 --~~~~g~~p~~~~~lid~~G~--v~~~~~g~~~~~~~~~~il~~l~~  214 (215)
                        +     .|  ++.++. +|.  -...+.|.   +...+.|++.|++
T Consensus        78 ~~g-----yP--Tl~lF~-~g~~~~~~~Y~G~---~r~~~~lv~~v~~  114 (116)
T cd03007          78 KES-----YP--VIYLFH-GGDFENPVPYSGA---DVTVDALQRFLKG  114 (116)
T ss_pred             cCC-----CC--EEEEEe-CCCcCCCccCCCC---cccHHHHHHHHHh
Confidence              6     89  777775 553  11234442   2566777777654

It forms homodimers and higher oligomers in vitro and in vivo. It contains a redox inactive TRX-like domain at the N-terminus, which is homologous to the redox active TRX (a) domains of PDI, and a C-terminal helical domain similar to the C-terminal domain of P5. The expression profile of ERp29 suggests a role in secretory protein production distinct from that of PDI. It has also been identified as a member of the thyroglobulin folding complex. The Drosophila homolog, Wind, is the product of windbeutel, an essential gene in the development of dorsal-ventral patterning. Wind is required for correct targeting of Pipe, a Golgi-resident type II transmembrane protein with homology to 2-O-sulfotransferase.

>PF13778 DUF4174: Domain of unknown function (DUF4174)

Probab=97.43  E-value=0.00037  Score=50.19  Aligned_cols=107  Identities=22%  Similarity=0.381  Sum_probs=70.7

Q ss_pred             ecCCcCCCc-EEEEEEcCCCChhhHHHHHHHHHHHHHHHHcCcEEEEEeCCCHHHHHHHHHHcCCCeEEEEcCChhHHHH
Q 028030           88 SLSKFKGKP-VVVYFYPADETPGCTKQACAFRDSYEKFKKAGAEVIGISGDDSSSHKAFAKKYRLPYTLLSDEGNKVRKE  166 (215)
Q Consensus        88 ~l~~~~gk~-~ll~f~~a~~C~~C~~~~~~l~~l~~~~~~~~v~vv~vs~d~~~~~~~~~~~~~~~~~~~~d~~~~~~~~  166 (215)
                      .|+++++|. +||+|-+...-+..+.++..|.+....+.++.+.++.+..+......         ..+-......+.+.
T Consensus         2 ~L~~~~w~~R~lvv~aps~~d~~~~~q~~~L~~~~~~l~eRdi~v~~i~~~~~~~~~---------~~~~~~~~~~lr~~   72 (118)
T PF13778_consen    2 PLDQFRWKNRLLVVFAPSADDPRYQQQLEELQNNRCGLDERDIVVIVITGDGARSPG---------KPLSPEDIQALRKR   72 (118)
T ss_pred             ChhHhcCcCceEEEECCCCCCHHHHHHHHHHHhhhhccccCceEEEEEeCCcccccc---------CcCCHHHHHHHHHH
Confidence            356677754 55555545566677888889988888888888888888654432211         11111223567888


Q ss_pred             hCCCccCCCCCCccEEEEEcCCCcEEEEEeCCCCCCccHHHHHHHHh
Q 028030          167 WGVPADFFGSLPGRQTYILDKNGVVQLIYNNQFQPEKHIDETLKFLQ  213 (215)
Q Consensus       167 ~g~~~~~~g~~p~~~~~lid~~G~v~~~~~g~~~~~~~~~~il~~l~  213 (215)
                      |++..+      .+.++||++||.+..++....+    .+++.+.|+
T Consensus        73 l~~~~~------~f~~vLiGKDG~vK~r~~~p~~----~~~lf~~ID  109 (118)
T PF13778_consen   73 LRIPPG------GFTVVLIGKDGGVKLRWPEPID----PEELFDTID  109 (118)
T ss_pred             hCCCCC------ceEEEEEeCCCcEEEecCCCCC----HHHHHHHHh
Confidence            887642      2489999999999999877543    455555554

>PRK10877 protein disulfide isomerase II DsbC; Provisional

Probab=97.40  E-value=0.0013  Score=52.97  Aligned_cols=101  Identities=18%  Similarity=0.171  Sum_probs=58.9

Q ss_pred             CCCcEEEEEEcCCCChhhHHHHHHHHHHHHHHHHcCcEEEEE--eC---CC--------------H-HHHHHHHHHcCCC
Q 028030           93 KGKPVVVYFYPADETPGCTKQACAFRDSYEKFKKAGAEVIGI--SG---DD--------------S-SSHKAFAKKYRLP  152 (215)
Q Consensus        93 ~gk~~ll~f~~a~~C~~C~~~~~~l~~l~~~~~~~~v~vv~v--s~---d~--------------~-~~~~~~~~~~~~~  152 (215)
                      .||.+|++|. -..||+|++..+.+.++.+    .|++|..+  ..   .+              + +.+.+++.....+
T Consensus       106 ~~k~~I~vFt-Dp~CpyCkkl~~~l~~~~~----~~v~v~~~~~P~~g~~~~a~~~a~~iwca~d~~~a~~~~~~~~~~~  180 (232)
T PRK10877        106 QEKHVITVFT-DITCGYCHKLHEQMKDYNA----LGITVRYLAFPRQGLDSQAEKDMKSIWCAADRNKAFDDAMKGKDVS  180 (232)
T ss_pred             CCCEEEEEEE-CCCChHHHHHHHHHHHHhc----CCeEEEEEeccCCCCCchHHHHHHHHhcCCCHHHHHHHHHcCCCCC
Confidence            5789999999 9999999999988877632    45666554  32   11              1 1222222222221


Q ss_pred             eE---EEEcCChhHHHHhCCCccCCCCCCccEEEEEcCCCcEEEEEeCCCCCCccHHHHHHH
Q 028030          153 YT---LLSDEGNKVRKEWGVPADFFGSLPGRQTYILDKNGVVQLIYNNQFQPEKHIDETLKF  211 (215)
Q Consensus       153 ~~---~~~d~~~~~~~~~g~~~~~~g~~p~~~~~lid~~G~v~~~~~g~~~~~~~~~~il~~  211 (215)
                      -.   ...+.+.++.+.+|+.+     .|  +++ + +||+++   .|.. +.+.++++++.
T Consensus       181 ~~~c~~~v~~~~~la~~lgi~g-----TP--tiv-~-~~G~~~---~G~~-~~~~L~~~l~~  229 (232)
T PRK10877        181 PASCDVDIADHYALGVQFGVQG-----TP--AIV-L-SNGTLV---PGYQ-GPKEMKAFLDE  229 (232)
T ss_pred             cccccchHHHhHHHHHHcCCcc-----cc--EEE-E-cCCeEe---eCCC-CHHHHHHHHHH
Confidence            11   11234567888999997     88  554 4 578775   4432 23345555543

>KOG0912 consensus Thiol-disulfide isomerase and thioredoxin [Posttranslational modification, protein turnover, chaperones; Energy production and conversion]

Probab=97.39  E-value=0.00074  Score=55.60  Aligned_cols=88  Identities=22%  Similarity=0.379  Sum_probs=61.7

Q ss_pred             CCcEEEEEEcCCCChhhHHHHHHHHHHHHHHHHc--CcEEEEEeCCCHHHHHHHHHHcCCCeEEEEcCChhHHHHhCCCc
Q 028030           94 GKPVVVYFYPADETPGCTKQACAFRDSYEKFKKA--GAEVIGISGDDSSSHKAFAKKYRLPYTLLSDEGNKVRKEWGVPA  171 (215)
Q Consensus        94 gk~~ll~f~~a~~C~~C~~~~~~l~~l~~~~~~~--~v~vv~vs~d~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~g~~~  171 (215)
                      ...++|+|+ |+||+..+...|.+.+.+++++++  .-++|.-.+|                   +|.+..++..|.+..
T Consensus        13 ~elvfv~Fy-AdWCrFSq~L~piF~EAa~~~~~e~P~~kvvwg~VD-------------------cd~e~~ia~ky~I~K   72 (375)
T KOG0912|consen   13 NELVFVNFY-ADWCRFSQMLKPIFEEAAAKFKQEFPEGKVVWGKVD-------------------CDKEDDIADKYHINK   72 (375)
T ss_pred             ceEEeeeee-hhhchHHHHHhHHHHHHHHHHHHhCCCcceEEEEcc-------------------cchhhHHhhhhcccc
Confidence            468999999 999999999999999998888865  1223322222                   355668888999987


Q ss_pred             cCCCCCCccEEEEEcCCCcEEEE-EeCCCCCCccHHHHHHHHh
Q 028030          172 DFFGSLPGRQTYILDKNGVVQLI-YNNQFQPEKHIDETLKFLQ  213 (215)
Q Consensus       172 ~~~g~~p~~~~~lid~~G~v~~~-~~g~~~~~~~~~~il~~l~  213 (215)
                           .|  ++=|+ .+|.+..+ |.|.    ..++.+++.++
T Consensus        73 -----yP--TlKvf-rnG~~~~rEYRg~----RsVeaL~efi~  103 (375)
T KOG0912|consen   73 -----YP--TLKVF-RNGEMMKREYRGQ----RSVEALIEFIE  103 (375)
T ss_pred             -----Cc--eeeee-eccchhhhhhccc----hhHHHHHHHHH
Confidence                 88  55555 78887763 6664    33445555443

>PRK11657 dsbG disulfide isomerase/thiol-disulfide oxidase; Provisional

Probab=97.37  E-value=0.00045  Score=56.33  Aligned_cols=89  Identities=18%  Similarity=0.229  Sum_probs=53.7

Q ss_pred             CCCcEEEEEEcCCCChhhHHHHHHHHHHHHHHHHcCcEEEEEe--C---CCH-------------HHHHHHHHHcCC---
Q 028030           93 KGKPVVVYFYPADETPGCTKQACAFRDSYEKFKKAGAEVIGIS--G---DDS-------------SSHKAFAKKYRL---  151 (215)
Q Consensus        93 ~gk~~ll~f~~a~~C~~C~~~~~~l~~l~~~~~~~~v~vv~vs--~---d~~-------------~~~~~~~~~~~~---  151 (215)
                      .+|.+|++|. -..||+|++..+.+.++.+. .  ++++..+.  .   ++.             +.+..+...+..   
T Consensus       116 ~ak~~I~vFt-Dp~CpyC~kl~~~l~~~~~~-g--~V~v~~ip~~~l~~~S~~~a~ailca~d~~~a~~~~~~~~~~~~~  191 (251)
T PRK11657        116 DAPRIVYVFA-DPNCPYCKQFWQQARPWVDS-G--KVQLRHILVGIIKPDSPGKAAAILAAKDPAKALQEYEASGGKLGL  191 (251)
T ss_pred             CCCeEEEEEE-CCCChhHHHHHHHHHHHhhc-C--ceEEEEEeccccCcchHHHHHHHHhccCHHHHHHHHHHhhhccCC
Confidence            4678999999 99999999999998876543 1  25544432  1   221             112222221111   


Q ss_pred             CeEE--------EEcCChhHHHHhCCCccCCCCCCccEEEEEcCCCcEE
Q 028030          152 PYTL--------LSDEGNKVRKEWGVPADFFGSLPGRQTYILDKNGVVQ  192 (215)
Q Consensus       152 ~~~~--------~~d~~~~~~~~~g~~~~~~g~~p~~~~~lid~~G~v~  192 (215)
                      ....        ..+.+.++...+|+.+     .|  ++|+.|.+|++.
T Consensus       192 ~~~~~~~~~~~~~i~~n~~l~~~lGv~G-----TP--aiv~~d~~G~~~  233 (251)
T PRK11657        192 KPPASIPAAVRKQLADNQKLMDDLGANA-----TP--AIYYMDKDGTLQ  233 (251)
T ss_pred             CccccCCHHHHHHHHHHHHHHHHcCCCC-----CC--EEEEECCCCCEE
Confidence            0110        0122445788899987     88  899999999764

>PRK11509 hydrogenase-1 operon protein HyaE; Provisional

Probab=97.31  E-value=0.0021  Score=47.04  Aligned_cols=76  Identities=16%  Similarity=0.213  Sum_probs=52.1

Q ss_pred             EEEEEEcCCC--ChhhHHHHHHHHHHHHHHHHcCcEEEEEeCCCHHHHHHHHHHcCCCeEEEEcCChhHHHHhCCCccCC
Q 028030           97 VVVYFYPADE--TPGCTKQACAFRDSYEKFKKAGAEVIGISGDDSSSHKAFAKKYRLPYTLLSDEGNKVRKEWGVPADFF  174 (215)
Q Consensus        97 ~ll~f~~a~~--C~~C~~~~~~l~~l~~~~~~~~v~vv~vs~d~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~g~~~~~~  174 (215)
                      ..+.|++++-  ++-+....-.|.++.++|.+..+.+.-|..                     |.+.+++..||+..   
T Consensus        36 ~~vl~~~gdp~r~~E~~D~avvleELa~e~~~~~v~~akVDi---------------------D~~~~LA~~fgV~s---   91 (132)
T PRK11509         36 DGVVLLSSDPKRTPEVSDNPVMIGELLREFPDYTWQVAIADL---------------------EQSEAIGDRFGVFR---   91 (132)
T ss_pred             cEEEEeCCCCCcCCccccHHHHHHHHHHHhcCCceEEEEEEC---------------------CCCHHHHHHcCCcc---
Confidence            4444442332  344556666777777777533366666664                     56678999999998   


Q ss_pred             CCCCccEEEEEcCCCcEEEEEeCCCCC
Q 028030          175 GSLPGRQTYILDKNGVVQLIYNNQFQP  201 (215)
Q Consensus       175 g~~p~~~~~lid~~G~v~~~~~g~~~~  201 (215)
                        +|  +++++ +||+++....|..+-
T Consensus        92 --iP--TLl~F-kdGk~v~~i~G~~~k  113 (132)
T PRK11509         92 --FP--ATLVF-TGGNYRGVLNGIHPW  113 (132)
T ss_pred             --CC--EEEEE-ECCEEEEEEeCcCCH
Confidence              99  66666 899999999985443

>PF03190 Thioredox_DsbH: Protein of unknown function, DUF255; InterPro: IPR004879 This is a group of uncharacterised proteins

Probab=97.28  E-value=0.0023  Score=48.47  Aligned_cols=83  Identities=14%  Similarity=0.130  Sum_probs=40.5

Q ss_pred             cCCCcEEEEEEcCCCChhhHHHHH-HHHH--HHHHHHHcCcEEEEEeCCCHHHHHHHHHHcCCCeEEEEcCChhHHHHhC
Q 028030           92 FKGKPVVVYFYPADETPGCTKQAC-AFRD--SYEKFKKAGAEVIGISGDDSSSHKAFAKKYRLPYTLLSDEGNKVRKEWG  168 (215)
Q Consensus        92 ~~gk~~ll~f~~a~~C~~C~~~~~-~l~~--l~~~~~~~~v~vv~vs~d~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~g  168 (215)
                      -.+|+++|.+. ++||..|..... .++.  +++-+-+ .+.-|-|..+...++......             ......|
T Consensus        35 ~e~KpIfl~ig-~~~C~wChvM~~esf~d~eVa~~lN~-~FI~VkvDree~Pdid~~y~~-------------~~~~~~~   99 (163)
T PF03190_consen   35 KENKPIFLSIG-YSWCHWCHVMERESFSDPEVAEYLNR-NFIPVKVDREERPDIDKIYMN-------------AVQAMSG   99 (163)
T ss_dssp             HHT--EEEEEE--TT-HHHHHHHHHTTT-HHHHHHHHH-H-EEEEEETTT-HHHHHHHHH-------------HHHHHHS
T ss_pred             hcCCcEEEEEE-ecCCcchhhhcccCcCCHHHHHHHhC-CEEEEEeccccCccHHHHHHH-------------HHHHhcC
Confidence            35799999999 999999986544 2222  3222222 244444444444443333322             0111114


Q ss_pred             CCccCCCCCCccEEEEEcCCCcEEEEEe
Q 028030          169 VPADFFGSLPGRQTYILDKNGVVQLIYN  196 (215)
Q Consensus       169 ~~~~~~g~~p~~~~~lid~~G~v~~~~~  196 (215)
                      ..+     .|  .+++++++|+..+...
T Consensus       100 ~gG-----wP--l~vfltPdg~p~~~~t  120 (163)
T PF03190_consen  100 SGG-----WP--LTVFLTPDGKPFFGGT  120 (163)
T ss_dssp             --------SS--EEEEE-TTS-EEEEES
T ss_pred             CCC-----CC--ceEEECCCCCeeeeee
Confidence            433     89  9999999999987643

; PDB: 3IRA_A.

>TIGR02196 GlrX_YruB Glutaredoxin-like protein, YruB-family

Probab=97.20  E-value=0.0029  Score=40.53  Aligned_cols=34  Identities=18%  Similarity=0.228  Sum_probs=25.1

Q ss_pred             EEEEEcCCCChhhHHHHHHHHHHHHHHHHcCcEEEEEeCCCH
Q 028030           98 VVYFYPADETPGCTKQACAFRDSYEKFKKAGAEVIGISGDDS  139 (215)
Q Consensus        98 ll~f~~a~~C~~C~~~~~~l~~l~~~~~~~~v~vv~vs~d~~  139 (215)
                      +..|+ +.||++|+...+.|.+       .++.+..++.++.
T Consensus         2 i~lf~-~~~C~~C~~~~~~l~~-------~~i~~~~vdi~~~   35 (74)
T TIGR02196         2 VKVYT-TPWCPPCKKAKEYLTS-------KGIAFEEIDVEKD   35 (74)
T ss_pred             EEEEc-CCCChhHHHHHHHHHH-------CCCeEEEEeccCC
Confidence            45566 9999999987766654       4688888877543

This glutaredoxin-like protein family contains the conserved CxxC motif and includes the Clostridium pasteurianum protein YruB which has been cloned from a rubredoxin operon. Somewhat related to NrdH, it is unknown whether this protein actually interacts with glutathione/glutathione reducatase, or, like NrdH, some other reductant system.

>TIGR02200 GlrX_actino Glutaredoxin-like protein

Probab=97.16  E-value=0.0015  Score=42.59  Aligned_cols=34  Identities=9%  Similarity=0.093  Sum_probs=24.4

Q ss_pred             EEEEEcCCCChhhHHHHHHHHHHHHHHHHcCcEEEEEeCCCH
Q 028030           98 VVYFYPADETPGCTKQACAFRDSYEKFKKAGAEVIGISGDDS  139 (215)
Q Consensus        98 ll~f~~a~~C~~C~~~~~~l~~l~~~~~~~~v~vv~vs~d~~  139 (215)
                      +..|| +.||++|++..+.|.++       ++.+-.++++..
T Consensus         2 v~ly~-~~~C~~C~~~~~~L~~~-------~~~~~~idi~~~   35 (77)
T TIGR02200         2 ITVYG-TTWCGYCAQLMRTLDKL-------GAAYEWVDIEED   35 (77)
T ss_pred             EEEEE-CCCChhHHHHHHHHHHc-------CCceEEEeCcCC
Confidence            56788 99999999987766544       566656666543

This family of glutaredoxin-like proteins is limited to the Actinobacteria and contains the conserved CxxC motif.

>PF13192 Thioredoxin_3: Thioredoxin domain; PDB: 1ZYP_B 1ZYN_A 1HYU_A 1ILO_A 1J08_F 2YWM_B 2AYT_B 2HLS_B 1A8L_A 2K8S_B

Probab=96.84  E-value=0.005  Score=40.51  Aligned_cols=69  Identities=20%  Similarity=0.392  Sum_probs=40.9

Q ss_pred             CCCChhhHHHHHHHHHHHHHHHHcCcEEEEEeCCCHHHHHHHHHHcCCCeEEEEcCChhHHHHhCCCccCCCCCCccEEE
Q 028030          104 ADETPGCTKQACAFRDSYEKFKKAGAEVIGISGDDSSSHKAFAKKYRLPYTLLSDEGNKVRKEWGVPADFFGSLPGRQTY  183 (215)
Q Consensus       104 a~~C~~C~~~~~~l~~l~~~~~~~~v~vv~vs~d~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~g~~~~~~g~~p~~~~~  183 (215)
                      +.+|+.|......+++...++.   +.+-.+...+                     ..++ ..||+..     +|   .+
T Consensus         7 ~~~C~~C~~~~~~~~~~~~~~~---i~~ei~~~~~---------------------~~~~-~~ygv~~-----vP---al   53 (76)
T PF13192_consen    7 SPGCPYCPELVQLLKEAAEELG---IEVEIIDIED---------------------FEEI-EKYGVMS-----VP---AL   53 (76)
T ss_dssp             CSSCTTHHHHHHHHHHHHHHTT---EEEEEEETTT---------------------HHHH-HHTT-SS-----SS---EE
T ss_pred             CCCCCCcHHHHHHHHHHHHhcC---CeEEEEEccC---------------------HHHH-HHcCCCC-----CC---EE
Confidence            7779999988888888776663   3332222221                     2234 7899987     89   44


Q ss_pred             EEcCCCcEEEEEeCCCCCCccHHHHHHHH
Q 028030          184 ILDKNGVVQLIYNNQFQPEKHIDETLKFL  212 (215)
Q Consensus       184 lid~~G~v~~~~~g~~~~~~~~~~il~~l  212 (215)
                      +||  |+++  +.|..   ...+++.++|
T Consensus        54 vIn--g~~~--~~G~~---p~~~el~~~l   75 (76)
T PF13192_consen   54 VIN--GKVV--FVGRV---PSKEELKELL   75 (76)
T ss_dssp             EET--TEEE--EESS-----HHHHHHHHH
T ss_pred             EEC--CEEE--EEecC---CCHHHHHHHh
Confidence            675  8875  55533   2234555544

...

>KOG1731 consensus FAD-dependent sulfhydryl oxidase/quiescin and related proteins [Cell cycle control, cell division, chromosome partitioning]

Probab=96.80  E-value=0.001  Score=59.04  Aligned_cols=44  Identities=23%  Similarity=0.286  Sum_probs=34.3

Q ss_pred             CcEEEEEEcCCCChhhHHHHHHHHHHHHHHHHc-C-cEEEEEeCCCH
Q 028030           95 KPVVVYFYPADETPGCTKQACAFRDSYEKFKKA-G-AEVIGISGDDS  139 (215)
Q Consensus        95 k~~ll~f~~a~~C~~C~~~~~~l~~l~~~~~~~-~-v~vv~vs~d~~  139 (215)
                      |.-||.|+ ++||+.|+...|.++++++.+.+= + +.|.+|..-++
T Consensus        58 ~~~lVEFy-~swCGhCr~FAPtfk~~A~dl~~W~~vv~vaaVdCA~~  103 (606)
T KOG1731|consen   58 KAKLVEFY-NSWCGHCRAFAPTFKKFAKDLEKWRPVVRVAAVDCADE  103 (606)
T ss_pred             hhHHHHHH-HhhhhhhhhcchHHHHHHHHHhcccceeEEEEeeccch
Confidence            57899999 999999999999999999888752 3 44445655333

>cd03020 DsbA_DsbC_DsbG DsbA family, DsbC and DsbG subfamily; V-shaped homodimeric proteins containing a redox active CXXC motif imbedded in a TRX fold

Probab=96.66  E-value=0.0069  Score=47.39  Aligned_cols=87  Identities=17%  Similarity=0.237  Sum_probs=50.8

Q ss_pred             CCCcEEEEEEcCCCChhhHHHHHHHHHHHHHHHHcCcEEEEEeCCC-H----------------HHHHHHHHHcCC--Ce
Q 028030           93 KGKPVVVYFYPADETPGCTKQACAFRDSYEKFKKAGAEVIGISGDD-S----------------SSHKAFAKKYRL--PY  153 (215)
Q Consensus        93 ~gk~~ll~f~~a~~C~~C~~~~~~l~~l~~~~~~~~v~vv~vs~d~-~----------------~~~~~~~~~~~~--~~  153 (215)
                      .++++|++|. ...|++|++..+.+.+   ...+-.+.++.+.... +                +.+.++......  +.
T Consensus        76 ~~~~~i~~f~-D~~Cp~C~~~~~~l~~---~~~~v~v~~~~~p~~~~~~s~~~a~~i~ca~d~~~a~~~~~~~~~~~~~~  151 (197)
T cd03020          76 NGKRVVYVFT-DPDCPYCRKLEKELKP---NADGVTVRIFPVPILGLPDSTAKAAAIWCAKDRAKAWTDAMSGGKVPPPA  151 (197)
T ss_pred             CCCEEEEEEE-CCCCccHHHHHHHHhh---ccCceEEEEEEcCcCCCccHHHHHHHhhcccCHHHHHHHHHhCCCCCCCc
Confidence            4789999999 9999999999998877   1111234555554322 1                122222222222  11


Q ss_pred             ---EEEEcCChhHHHHhCCCccCCCCCCccEEEEEcCCCcEE
Q 028030          154 ---TLLSDEGNKVRKEWGVPADFFGSLPGRQTYILDKNGVVQ  192 (215)
Q Consensus       154 ---~~~~d~~~~~~~~~g~~~~~~g~~p~~~~~lid~~G~v~  192 (215)
                         ..-.+.+.++...+|+.+     +|  ++ ++ ++|+++
T Consensus       152 ~~~~~~i~~~~~l~~~~gi~g-----tP--ti-i~-~~G~~~  184 (197)
T cd03020         152 ASCDNPVAANLALGRQLGVNG-----TP--TI-VL-ADGRVV  184 (197)
T ss_pred             cccCchHHHHHHHHHHcCCCc-----cc--EE-EE-CCCeEe
Confidence               111234557888899987     89  54 45 468763

They function as protein disulfide isomerases and chaperones in the bacterial periplasm to correct non-native disulfide bonds formed by DsbA and prevent aggregation of incorrectly folded proteins. DsbC and DsbG are kept in their reduced state by the cytoplasmic membrane protein DsbD, which utilizes the TRX/TRX reductase system in the cytosol as a source of reducing equivalents. DsbG differ from DsbC in that it has a more limited substrate specificity, and it may preferentially act later in the folding process to catalyze disulfide rearrangements in folded or partially folded proteins. Also included in the alignment is the predicted protein TrbB, whose gene was sequenced from the enterohemorrhagic E. coli type IV pilus gene cluster, which is required for efficient plasmid transfer.

>cd03019 DsbA_DsbA DsbA family, DsbA subfamily; DsbA is a monomeric thiol disulfide oxidoreductase protein containing a redox active CXXC motif imbedded in a TRX fold

Probab=96.45  E-value=0.0064  Score=46.32  Aligned_cols=41  Identities=22%  Similarity=0.379  Sum_probs=33.6

Q ss_pred             CCCcEEEEEEcCCCChhhHHHHHHHHHHHHHHHHcCcEEEEEe
Q 028030           93 KGKPVVVYFYPADETPGCTKQACAFRDSYEKFKKAGAEVIGIS  135 (215)
Q Consensus        93 ~gk~~ll~f~~a~~C~~C~~~~~~l~~l~~~~~~~~v~vv~vs  135 (215)
                      .++++|+.|+ ...||+|....+.+.++..++++ ++.+..+.
T Consensus        14 ~~~~~i~~f~-D~~Cp~C~~~~~~~~~~~~~~~~-~v~~~~~~   54 (178)
T cd03019          14 SGKPEVIEFF-SYGCPHCYNFEPILEAWVKKLPK-DVKFEKVP   54 (178)
T ss_pred             CCCcEEEEEE-CCCCcchhhhhHHHHHHHHhCCC-CceEEEcC
Confidence            5789999999 89999999999999999888854 46665443

It is involved in the oxidative protein folding pathway in prokaryotes, and is the strongest thiol oxidant known, due to the unusual stability of the thiolate anion form of the first cysteine in the CXXC motif. The highly unstable oxidized form of DsbA directly donates disulfide bonds to reduced proteins secreted into the bacterial periplasm. This rapid and unidirectional process helps to catalyze the folding of newly-synthesized polypeptides. To regain catalytic activity, reduced DsbA is then reoxidized by the membrane protein DsbB, which generates its disulfides from oxidized quinones, which in turn are reoxidized by the electron transport chain.

>PF00462 Glutaredoxin: Glutaredoxin; InterPro: IPR002109 Glutaredoxins [, , ], also known as thioltransferases (disulphide reductases, are small proteins of approximately one hundred amino-acid residues which utilise glutathione and NADPH as cofactors

Probab=96.43  E-value=0.028  Score=34.92  Aligned_cols=42  Identities=19%  Similarity=0.252  Sum_probs=29.3

Q ss_pred             EEEEEcCCCChhhHHHHHHHHHHHHHHHHcCcEEEEEeCCCHHHHHHHHH
Q 028030           98 VVYFYPADETPGCTKQACAFRDSYEKFKKAGAEVIGISGDDSSSHKAFAK  147 (215)
Q Consensus        98 ll~f~~a~~C~~C~~~~~~l~~l~~~~~~~~v~vv~vs~d~~~~~~~~~~  147 (215)
                      |+.|. ..+|+.|......|       ++.|+.+-.+.+++.++.++.++
T Consensus         1 V~vy~-~~~C~~C~~~~~~L-------~~~~i~y~~~dv~~~~~~~~~l~   42 (60)
T PF00462_consen    1 VVVYT-KPGCPYCKKAKEFL-------DEKGIPYEEVDVDEDEEAREELK   42 (60)
T ss_dssp             EEEEE-STTSHHHHHHHHHH-------HHTTBEEEEEEGGGSHHHHHHHH
T ss_pred             cEEEE-cCCCcCHHHHHHHH-------HHcCCeeeEcccccchhHHHHHH
Confidence            45677 89999999876555       44578888888776544444443

Oxidized glutathione is regenerated by glutathione reductase. Together these components compose the glutathione system []. Glutaredoxin functions as an electron carrier in the glutathione-dependent synthesis of deoxyribonucleotides by the enzyme ribonucleotide reductase. Like thioredoxin, which functions in a similar way, glutaredoxin possesses an active centre disulphide bond []. It exists in either a reduced or an oxidized form where the two cysteine residues are linked in an intramolecular disulphide bond. Glutaredoxin has been sequenced in a variety of species. On the basis of extensive sequence similarity, it has been proposed [] that Vaccinia virus protein O2L is most probably a glutaredoxin. Finally, it must be noted that Bacteriophage T4 thioredoxin seems also to be evolutionary related. In position 5 of the pattern T4 thioredoxin has Val instead of Pro. This entry represents Glutaredoxin.; GO: 0009055 electron carrier activity, 0015035 protein disulfide oxidoreductase activity, 0045454 cell redox homeostasis; PDB: 1QFN_A 1GRX_A 1EGO_A 1EGR_A 3RHC_A 3RHB_A 3IPZ_A 1NHO_A 3GX8_A 3D5J_A ....

>PRK10954 periplasmic protein disulfide isomerase I; Provisional

Probab=96.29  E-value=0.025  Score=44.68  Aligned_cols=41  Identities=20%  Similarity=0.421  Sum_probs=30.6

Q ss_pred             CCCcEEEEEEcCCCChhhHHHHHHH---HHHHHHHHHcCcEEEEEe
Q 028030           93 KGKPVVVYFYPADETPGCTKQACAF---RDSYEKFKKAGAEVIGIS  135 (215)
Q Consensus        93 ~gk~~ll~f~~a~~C~~C~~~~~~l---~~l~~~~~~~~v~vv~vs  135 (215)
                      .|++.|+.|+ .-.||+|....+.+   ..+.+.+++ ++.++-+.
T Consensus        36 ~~~~~VvEff-dy~CphC~~~~~~l~~~~~~~~~~~~-~v~~~~~~   79 (207)
T PRK10954         36 AGEPQVLEFF-SFYCPHCYQFEEVYHVSDNVKKKLPE-GTKMTKYH   79 (207)
T ss_pred             CCCCeEEEEe-CCCCccHHHhcccccchHHHHHhCCC-CCeEEEec
Confidence            4788899999 99999999887765   667777664 45655443

>TIGR02180 GRX_euk Glutaredoxin

Probab=96.17  E-value=0.021  Score=37.68  Aligned_cols=45  Identities=22%  Similarity=0.267  Sum_probs=30.3

Q ss_pred             EEEEEcCCCChhhHHHHHHHHHHHHHHHHcCcEEEEEeCCC-HHHHHHHH
Q 028030           98 VVYFYPADETPGCTKQACAFRDSYEKFKKAGAEVIGISGDD-SSSHKAFA  146 (215)
Q Consensus        98 ll~f~~a~~C~~C~~~~~~l~~l~~~~~~~~v~vv~vs~d~-~~~~~~~~  146 (215)
                      |+.|+ ++||++|....+.|.++.  .+ ..+.++-|+.++ .+.+++++
T Consensus         1 V~~f~-~~~Cp~C~~~~~~L~~~~--i~-~~~~~~~v~~~~~~~~~~~~l   46 (84)
T TIGR02180         1 VVVFS-KSYCPYCKKAKEILAKLN--VK-PAYEVVELDQLSNGSEIQDYL   46 (84)
T ss_pred             CEEEE-CCCChhHHHHHHHHHHcC--CC-CCCEEEEeeCCCChHHHHHHH
Confidence            46677 999999999999998875  22 126777776643 34444433

This model represents eukaryotic glutaredoxins and includes sequences from fungi, plants and metazoans as well as viruses.

>KOG3425 consensus Uncharacterized conserved protein [Function unknown]

Probab=96.14  E-value=0.016  Score=41.27  Aligned_cols=75  Identities=17%  Similarity=0.325  Sum_probs=52.3

Q ss_pred             CCc-CCCcEEEEEEcC-------CCChhhHHHHHHHHHHHHHHHHcCcEEEEEeCCCHHHHHHHHHHcCCCeEEEEcCCh
Q 028030           90 SKF-KGKPVVVYFYPA-------DETPGCTKQACAFRDSYEKFKKAGAEVIGISGDDSSSHKAFAKKYRLPYTLLSDEGN  161 (215)
Q Consensus        90 ~~~-~gk~~ll~f~~a-------~~C~~C~~~~~~l~~l~~~~~~~~v~vv~vs~d~~~~~~~~~~~~~~~~~~~~d~~~  161 (215)
                      ++. +|+.+.+.|...       +|||.|.+..|.+.+-.++..+ ++.||-|-+.+.+.|              -|++.
T Consensus        20 ~~~~n~~~ifvlF~gskd~~tGqSWCPdCV~AEPvi~~alk~ap~-~~~~v~v~VG~rp~W--------------k~p~n   84 (128)
T KOG3425|consen   20 KNVENGKTIFVLFLGSKDDTTGQSWCPDCVAAEPVINEALKHAPE-DVHFVHVYVGNRPYW--------------KDPAN   84 (128)
T ss_pred             HHHhCCceEEEEEecccCCCCCCcCCchHHHhhHHHHHHHHhCCC-ceEEEEEEecCCCcc--------------cCCCC
Confidence            344 677788888733       5999999999999998775554 599999987766543              25555


Q ss_pred             hHHHHhCC-CccCCCCCCccEEEEEc
Q 028030          162 KVRKEWGV-PADFFGSLPGRQTYILD  186 (215)
Q Consensus       162 ~~~~~~g~-~~~~~g~~p~~~~~lid  186 (215)
                      .+....++ ..     +|  +..=.+
T Consensus        85 ~FR~d~~~lt~-----vP--TLlrw~  103 (128)
T KOG3425|consen   85 PFRKDPGILTA-----VP--TLLRWK  103 (128)
T ss_pred             ccccCCCceee-----cc--eeeEEc
Confidence            56666666 33     77  555554

>KOG0191 consensus Thioredoxin/protein disulfide isomerase [Posttranslational modification, protein turnover, chaperones]

Probab=96.09  E-value=0.026  Score=48.81  Aligned_cols=42  Identities=24%  Similarity=0.239  Sum_probs=34.8

Q ss_pred             CcEEEEEEcCCCChhhHHHHHHHHHHHHHHHH-cCcEEEEEeCC
Q 028030           95 KPVVVYFYPADETPGCTKQACAFRDSYEKFKK-AGAEVIGISGD  137 (215)
Q Consensus        95 k~~ll~f~~a~~C~~C~~~~~~l~~l~~~~~~-~~v~vv~vs~d  137 (215)
                      ...+|.|+ +.||++|+..++.+.++...++. .++.+..+..+
T Consensus       163 ~~~lv~f~-aPwc~~ck~l~~~~~~~a~~~~~~~~v~~~~~d~~  205 (383)
T KOG0191|consen  163 ADWLVEFY-APWCGHCKKLAPEWEKLAKLLKSKENVELGKIDAT  205 (383)
T ss_pred             cceEEEEe-ccccHHhhhcChHHHHHHHHhccCcceEEEeeccc
Confidence            56888888 99999999999999999998874 46777777654

>cd02979 PHOX_C FAD-dependent Phenol hydoxylase (PHOX) family, C-terminal TRX-fold domain; composed of proteins similar to PHOX from the aerobic topsoil yeast Trichosporon cutaneum

Probab=96.09  E-value=0.15  Score=38.85  Aligned_cols=116  Identities=16%  Similarity=0.231  Sum_probs=71.5

Q ss_pred             CCCCCCeEEeC-CCCCeeecCCc---CCCcEEEEEEcCCCChhhHHHHHHHHHHHHHHHHc----------------CcE
Q 028030           71 GQAPPSFTLKD-QEGRNVSLSKF---KGKPVVVYFYPADETPGCTKQACAFRDSYEKFKKA----------------GAE  130 (215)
Q Consensus        71 g~~~P~f~l~~-~~g~~~~l~~~---~gk~~ll~f~~a~~C~~C~~~~~~l~~l~~~~~~~----------------~v~  130 (215)
                      |..+|++.+.. .||+++.|.+.   .|++-|++|- ++--  +......|.++.+.+...                -++
T Consensus         1 G~R~~~a~V~r~aD~~p~~L~~~~~adGrfrI~vFa-gd~~--~~~~~~~l~~~~~~L~~~~~~~~~~~~~~~~~~~~~~   77 (167)
T cd02979           1 GRRFPSAPVVRQADALPVHLGHRLPADGRFRIYVFA-GDIA--PAQQKSRLTQLCDALDSPDSFPLRYTPRGADPDSVFD   77 (167)
T ss_pred             CCcCCCceEEEecCCCCHhHhhhccCCCCEEEEEEc-CCCC--chhHHHHHHHHHHHHcCCcchHhhcCCCCCCCCCcEE
Confidence            56788888776 68999988764   6899999997 4432  233444555555544221                266


Q ss_pred             EEEEeCCCH-----HHHHHHH----HHcCCCeE-EEEcCC------hhHHHHhCCCccCCCCCCccEEEEEcCCCcEEEE
Q 028030          131 VIGISGDDS-----SSHKAFA----KKYRLPYT-LLSDEG------NKVRKEWGVPADFFGSLPGRQTYILDKNGVVQLI  194 (215)
Q Consensus       131 vv~vs~d~~-----~~~~~~~----~~~~~~~~-~~~d~~------~~~~~~~g~~~~~~g~~p~~~~~lid~~G~v~~~  194 (215)
                      ++.|.....     ..+-+.+    ...++.+. ++.|..      +...+.||+..+    ..  .++++-|||-|-+.
T Consensus        78 ~~~I~~~~~~~~e~~dlP~~~~p~~~~~~~~~~~v~~d~~~~~~~~~~~~~~~gv~~~----~g--~vvvvRPDgyVg~~  151 (167)
T cd02979          78 VVTIHAAPRREIELLDLPAVLRPFGEKKGWDYEKIYADDDSYHEGHGDAYEKYGIDPE----RG--AVVVVRPDQYVALV  151 (167)
T ss_pred             EEEEecCCccccchhhCcHhhcCCCCccccceeeEEecCccccCCcccHHHhhCCCCC----CC--CEEEECCCCeEEEE
Confidence            666654321     1222222    33345543 455543      568999998742    34  79999999988654


Q ss_pred             E
Q 028030          195 Y  195 (215)
Q Consensus       195 ~  195 (215)
                      .
T Consensus       152 ~  152 (167)
T cd02979         152 G  152 (167)
T ss_pred             e
Confidence            3

PHOX is a flavoprotein monooxygenase that catalyzes the hydroxylation of phenol and simple phenol derivatives in the ortho position with the consumption of NADPH and oxygen. This is the first step in the biodegradation and detoxification of phenolic compounds. PHOX contains three domains. The substrate and FAD/NAD(P) binding sites are contained in the first two domains, which adopt a complicated folding pattern. The third or C-terminal domain contains a TRX fold and is involved in dimerization. The functional unit of PHOX is a dimer, although active tetramers of the recombinant enzyme can be isolated when overproduced in bacteria.

>PRK11200 grxA glutaredoxin 1; Provisional

Probab=95.97  E-value=0.044  Score=36.68  Aligned_cols=38  Identities=16%  Similarity=0.076  Sum_probs=30.3

Q ss_pred             EEEEEcCCCChhhHHHHHHHHHHHHHHHHcCcEEEEEeCCC
Q 028030           98 VVYFYPADETPGCTKQACAFRDSYEKFKKAGAEVIGISGDD  138 (215)
Q Consensus        98 ll~f~~a~~C~~C~~~~~~l~~l~~~~~~~~v~vv~vs~d~  138 (215)
                      |..|. .+||+.|.+....|.++..++.  |+.+.-++.+.
T Consensus         3 v~iy~-~~~C~~C~~a~~~L~~l~~~~~--~i~~~~idi~~   40 (85)
T PRK11200          3 VVIFG-RPGCPYCVRAKELAEKLSEERD--DFDYRYVDIHA   40 (85)
T ss_pred             EEEEe-CCCChhHHHHHHHHHhhccccc--CCcEEEEECCC
Confidence            56667 9999999999999999987653  67777777653

>cd02976 NrdH NrdH-redoxin (NrdH) family; NrdH is a small monomeric protein with a conserved redox active CXXC motif within a TRX fold, characterized by a glutaredoxin (GRX)-like sequence and TRX-like activity profile

Probab=95.92  E-value=0.049  Score=34.53  Aligned_cols=33  Identities=15%  Similarity=0.304  Sum_probs=22.8

Q ss_pred             EEEEEcCCCChhhHHHHHHHHHHHHHHHHcCcEEEEEeCCC
Q 028030           98 VVYFYPADETPGCTKQACAFRDSYEKFKKAGAEVIGISGDD  138 (215)
Q Consensus        98 ll~f~~a~~C~~C~~~~~~l~~l~~~~~~~~v~vv~vs~d~  138 (215)
                      ++.|. ..||+.|......|.+       .++.+..+..|.
T Consensus         2 v~l~~-~~~c~~c~~~~~~l~~-------~~i~~~~~~i~~   34 (73)
T cd02976           2 VTVYT-KPDCPYCKATKRFLDE-------RGIPFEEVDVDE   34 (73)
T ss_pred             EEEEe-CCCChhHHHHHHHHHH-------CCCCeEEEeCCC
Confidence            34556 8999999986655544       367777777654

In vitro, it displays protein disulfide reductase activity that is dependent on TRX reductase, not glutathione (GSH). It is part of the NrdHIEF operon, where NrdEF codes for class Ib ribonucleotide reductase (RNR-Ib), an efficient enzyme at low oxygen levels. Under these conditions when GSH is mostly conjugated to spermidine, NrdH can still function and act as a hydrogen donor for RNR-Ib. It has been suggested that the NrdHEF system may be the oldest RNR reducing system, capable of functioning in a microaerophilic environment, where GSH was not yet available. NrdH from Corynebacterium ammoniagenes can form domain-swapped dimers, although it is unknown if this happens in vivo. Domain-swapped dimerization, which results in the blocking of the TRX reductase binding site, cou

>KOG4277 consensus Uncharacterized conserved protein, contains thioredoxin domain [General function prediction only]

Probab=95.90  E-value=0.017  Score=47.69  Aligned_cols=71  Identities=21%  Similarity=0.296  Sum_probs=47.6

Q ss_pred             CcEEEEEEcCCCChhhHHHHHHHHHHHHHHHHcCcEEEEEeCCCHHHHHHHHHHcCCCeEEE-Ec--CChhHHHHhCCCc
Q 028030           95 KPVVVYFYPADETPGCTKQACAFRDSYEKFKKAGAEVIGISGDDSSSHKAFAKKYRLPYTLL-SD--EGNKVRKEWGVPA  171 (215)
Q Consensus        95 k~~ll~f~~a~~C~~C~~~~~~l~~l~~~~~~~~v~vv~vs~d~~~~~~~~~~~~~~~~~~~-~d--~~~~~~~~~g~~~  171 (215)
                      ...+|.|| +.||..|++..|...+.--++++.|.                      +..+- .|  .-..++..||+++
T Consensus        44 diW~VdFY-APWC~HCKkLePiWdeVG~elkdig~----------------------PikVGKlDaT~f~aiAnefgiqG  100 (468)
T KOG4277|consen   44 DIWFVDFY-APWCAHCKKLEPIWDEVGHELKDIGL----------------------PIKVGKLDATRFPAIANEFGIQG  100 (468)
T ss_pred             CeEEEEee-chhhhhcccccchhHHhCcchhhcCC----------------------ceeecccccccchhhHhhhccCC
Confidence            46899999 99999999998888877555555432                      22221 12  2346889999998


Q ss_pred             cCCCCCCccEEEEEcCCCcEEEEEeC
Q 028030          172 DFFGSLPGRQTYILDKNGVVQLIYNN  197 (215)
Q Consensus       172 ~~~g~~p~~~~~lid~~G~v~~~~~g  197 (215)
                           .|  ++-++ ++|-++ .+.|
T Consensus       101 -----YP--TIk~~-kgd~a~-dYRG  117 (468)
T KOG4277|consen  101 -----YP--TIKFF-KGDHAI-DYRG  117 (468)
T ss_pred             -----Cc--eEEEe-cCCeee-ecCC
Confidence                 99  55555 555554 3444

>TIGR02190 GlrX-dom Glutaredoxin-family domain

Probab=95.87  E-value=0.05  Score=35.92  Aligned_cols=38  Identities=21%  Similarity=0.312  Sum_probs=27.0

Q ss_pred             CCcEEEEEEcCCCChhhHHHHHHHHHHHHHHHHcCcEEEEEeCCCH
Q 028030           94 GKPVVVYFYPADETPGCTKQACAFRDSYEKFKKAGAEVIGISGDDS  139 (215)
Q Consensus        94 gk~~ll~f~~a~~C~~C~~~~~~l~~l~~~~~~~~v~vv~vs~d~~  139 (215)
                      .+..|+.|. .+||+.|.+....|.       +.|+.+..+.++..
T Consensus         6 ~~~~V~ly~-~~~Cp~C~~ak~~L~-------~~gi~y~~idi~~~   43 (79)
T TIGR02190         6 KPESVVVFT-KPGCPFCAKAKATLK-------EKGYDFEEIPLGND   43 (79)
T ss_pred             CCCCEEEEE-CCCCHhHHHHHHHHH-------HcCCCcEEEECCCC
Confidence            345566777 999999998866664       34677777776544

This C-terminal domain with homology to glutaredoxin is fused to an N-terminal peroxiredoxin-like domain.

>PF13462 Thioredoxin_4: Thioredoxin; PDB: 3FEU_A 3HZ8_A 3DVW_A 3A3T_E 3GMF_A 1Z6M_A 3GYK_C 3BCK_A 3BD2_A 3BCI_A

Probab=95.73  E-value=0.04  Score=41.10  Aligned_cols=49  Identities=12%  Similarity=0.177  Sum_probs=37.9

Q ss_pred             eeecCCcCCCcEEEEEEcCCCChhhHHHHHHHHHHHHHH--HHcCcEEEEEeC
Q 028030           86 NVSLSKFKGKPVVVYFYPADETPGCTKQACAFRDSYEKF--KKAGAEVIGISG  136 (215)
Q Consensus        86 ~~~l~~~~gk~~ll~f~~a~~C~~C~~~~~~l~~l~~~~--~~~~v~vv~vs~  136 (215)
                      .+.+.+-.++++|+.|+ ...||+|.+..+.+.++.+++  ++ .+.++.+..
T Consensus         4 ~~~~G~~~a~~~v~~f~-d~~Cp~C~~~~~~~~~~~~~~i~~~-~v~~~~~~~   54 (162)
T PF13462_consen    4 DPTIGNPDAPITVTEFF-DFQCPHCAKFHEELEKLLKKYIDPG-KVKFVFRPV   54 (162)
T ss_dssp             SEEES-TTTSEEEEEEE--TTSHHHHHHHHHHHHHHHHHTTTT-TEEEEEEES
T ss_pred             CCeecCCCCCeEEEEEE-CCCCHhHHHHHHHHhhhhhhccCCC-ceEEEEEEc
Confidence            34555556788999999 999999999999999999998  33 488887765

...

>PRK10329 glutaredoxin-like protein; Provisional

Probab=95.63  E-value=0.081  Score=35.27  Aligned_cols=35  Identities=14%  Similarity=0.247  Sum_probs=24.8

Q ss_pred             EEEEEcCCCChhhHHHHHHHHHHHHHHHHcCcEEEEEeCCCHH
Q 028030           98 VVYFYPADETPGCTKQACAFRDSYEKFKKAGAEVIGISGDDSS  140 (215)
Q Consensus        98 ll~f~~a~~C~~C~~~~~~l~~l~~~~~~~~v~vv~vs~d~~~  140 (215)
                      +..|. ..||++|......|       .++|+.+-.+.++...
T Consensus         3 v~lYt-~~~Cp~C~~ak~~L-------~~~gI~~~~idi~~~~   37 (81)
T PRK10329          3 ITIYT-RNDCVQCHATKRAM-------ESRGFDFEMINVDRVP   37 (81)
T ss_pred             EEEEe-CCCCHhHHHHHHHH-------HHCCCceEEEECCCCH
Confidence            44566 89999999876555       3457888777776443

>cd02066 GRX_family Glutaredoxin (GRX) family; composed of GRX, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain

Probab=95.50  E-value=0.074  Score=33.46  Aligned_cols=42  Identities=21%  Similarity=0.237  Sum_probs=28.1

Q ss_pred             EEEEEcCCCChhhHHHHHHHHHHHHHHHHcCcEEEEEeCCCHHHHHHHHH
Q 028030           98 VVYFYPADETPGCTKQACAFRDSYEKFKKAGAEVIGISGDDSSSHKAFAK  147 (215)
Q Consensus        98 ll~f~~a~~C~~C~~~~~~l~~l~~~~~~~~v~vv~vs~d~~~~~~~~~~  147 (215)
                      ++.|. ..||+.|+.....|.+.       ++.+.-+..+.....+++++
T Consensus         2 v~ly~-~~~Cp~C~~~~~~L~~~-------~i~~~~~di~~~~~~~~~l~   43 (72)
T cd02066           2 VVVFS-KSTCPYCKRAKRLLESL-------GIEFEEIDILEDGELREELK   43 (72)
T ss_pred             EEEEE-CCCCHHHHHHHHHHHHc-------CCcEEEEECCCCHHHHHHHH
Confidence            45566 89999999887776654       47777777765443444443

GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes are known including human GRX1 and GRX2, as well as E. coli GRX1 and GRX3, which

>cd03023 DsbA_Com1_like DsbA family, Com1-like subfamily; composed of proteins similar to Com1, a 27-kDa outer membrane-associated immunoreactive protein originally found in both acute and chronic disease strains of the pathogenic bacteria Coxiella burnetti

Probab=95.44  E-value=0.022  Score=41.93  Aligned_cols=38  Identities=18%  Similarity=0.235  Sum_probs=30.5

Q ss_pred             CCCcEEEEEEcCCCChhhHHHHHHHHHHHHHHHHcCcEEEE
Q 028030           93 KGKPVVVYFYPADETPGCTKQACAFRDSYEKFKKAGAEVIG  133 (215)
Q Consensus        93 ~gk~~ll~f~~a~~C~~C~~~~~~l~~l~~~~~~~~v~vv~  133 (215)
                      .++++|+.|+ ..+||+|....+.+.++..++.+  +.++.
T Consensus         4 ~a~~~i~~f~-D~~Cp~C~~~~~~l~~~~~~~~~--~~~~~   41 (154)
T cd03023           4 NGDVTIVEFF-DYNCGYCKKLAPELEKLLKEDPD--VRVVF   41 (154)
T ss_pred             CCCEEEEEEE-CCCChhHHHhhHHHHHHHHHCCC--ceEEE
Confidence            3688999999 99999999999999998777653  44443

It contains a CXXC motif, assumed to be imbedded in a DsbA-like structure. Its homology to DsbA suggests that the protein is a protein disulfide oxidoreductase. The role of such a protein in pathogenesis is unknown.

>TIGR02194 GlrX_NrdH Glutaredoxin-like protein NrdH

Probab=95.27  E-value=0.089  Score=33.95  Aligned_cols=33  Identities=15%  Similarity=0.264  Sum_probs=23.4

Q ss_pred             EEEcCCCChhhHHHHHHHHHHHHHHHHcCcEEEEEeCCCHH
Q 028030          100 YFYPADETPGCTKQACAFRDSYEKFKKAGAEVIGISGDDSS  140 (215)
Q Consensus       100 ~f~~a~~C~~C~~~~~~l~~l~~~~~~~~v~vv~vs~d~~~  140 (215)
                      .|. ..+|+.|.+....|.+       .|+.+-.+.++...
T Consensus         3 ly~-~~~Cp~C~~ak~~L~~-------~~i~~~~~di~~~~   35 (72)
T TIGR02194         3 VYS-KNNCVQCKMTKKALEE-------HGIAFEEINIDEQP   35 (72)
T ss_pred             EEe-CCCCHHHHHHHHHHHH-------CCCceEEEECCCCH
Confidence            455 8999999988776654       47777777765443

NrdH-redoxin is a representative of a class of small redox proteins that contain a conserved CXXC motif and are characterized by a glutaredoxin-like amino acid sequence and thioredoxin-like activity profile. Unlike other the glutaredoxins to which it is most closely related, NrdH aparrently does not interact with glutathione/glutathione reductase, but rather with thioredoxin reductase to catalyze the reduction of ribonucleotide reductase.

>PF11009 DUF2847: Protein of unknown function (DUF2847); InterPro: IPR022551 Members of this protein family, including YtxJ from Bacillus subtilis, occur in species that encode proteins for synthesizing bacillithiol

Probab=95.26  E-value=0.17  Score=35.54  Aligned_cols=76  Identities=21%  Similarity=0.297  Sum_probs=48.6

Q ss_pred             CCcEEEEEEcCCCChhhHHHHHHHHHHHHHHHHcCcEEEEEeCCCHHHHHHHHHHcCCCeEEEEcCChhHHHHhCCCccC
Q 028030           94 GKPVVVYFYPADETPGCTKQACAFRDSYEKFKKAGAEVIGISGDDSSSHKAFAKKYRLPYTLLSDEGNKVRKEWGVPADF  173 (215)
Q Consensus        94 gk~~ll~f~~a~~C~~C~~~~~~l~~l~~~~~~~~v~vv~vs~d~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~g~~~~~  173 (215)
                      .++++|+=- ++.|+.....+..|++.++...++ +.+..|.+-...                 +-...++..||+..+ 
T Consensus        19 ~~~~~iFKH-St~C~IS~~a~~~~e~~~~~~~~~-~~~y~l~v~~~R-----------------~vSn~IAe~~~V~He-   78 (105)
T PF11009_consen   19 EKPVLIFKH-STRCPISAMALREFEKFWEESPDE-IPVYYLDVIEYR-----------------PVSNAIAEDFGVKHE-   78 (105)
T ss_dssp             -SEEEEEEE--TT-HHHHHHHHHHHHHHHHHT-----EEEEEGGGGH-----------------HHHHHHHHHHT-----
T ss_pred             cCcEEEEEe-CCCChhhHHHHHHHHHHhhcCCcc-ceEEEEEEEeCc-----------------hhHHHHHHHhCCCcC-
Confidence            466776666 888999999999999988887764 777766542221                 124578889999863 


Q ss_pred             CCCCCccEEEEEcCCCcEEEEE
Q 028030          174 FGSLPGRQTYILDKNGVVQLIY  195 (215)
Q Consensus       174 ~g~~p~~~~~lid~~G~v~~~~  195 (215)
                         -|  .++|| +||++++.-
T Consensus        79 ---SP--Q~ili-~~g~~v~~a   94 (105)
T PF11009_consen   79 ---SP--QVILI-KNGKVVWHA   94 (105)
T ss_dssp             ---SS--EEEEE-ETTEEEEEE
T ss_pred             ---CC--cEEEE-ECCEEEEEC
Confidence               45  99999 699998764

The protein is described as thioredoxin-like, while another bacillithiol-associated protein, YpdA (TIGR04018 from TIGRFAMS), is described as thioredoxin reductase-like. ; PDB: 3IV4_A.

>cd03419 GRX_GRXh_1_2_like Glutaredoxin (GRX) family, GRX human class 1 and 2 (h_1_2)-like subfamily; composed of proteins similar to human GRXs, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain

Probab=94.86  E-value=0.12  Score=33.92  Aligned_cols=35  Identities=17%  Similarity=0.321  Sum_probs=24.7

Q ss_pred             EEEEEcCCCChhhHHHHHHHHHHHHHHHHcCcEEEEEeCCC
Q 028030           98 VVYFYPADETPGCTKQACAFRDSYEKFKKAGAEVIGISGDD  138 (215)
Q Consensus        98 ll~f~~a~~C~~C~~~~~~l~~l~~~~~~~~v~vv~vs~d~  138 (215)
                      |+.|. ..|||.|......|.++..     .++++-+..++
T Consensus         2 v~~y~-~~~Cp~C~~~~~~l~~~~~-----~~~~~~v~~~~   36 (82)
T cd03419           2 VVVFS-KSYCPYCKRAKSLLKELGV-----KPAVVELDQHE   36 (82)
T ss_pred             EEEEE-cCCCHHHHHHHHHHHHcCC-----CcEEEEEeCCC
Confidence            45566 9999999988888777633     35666666543

GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes

>PF02114 Phosducin: Phosducin; InterPro: IPR024253 The outer and inner segments of vertebrate rod photoreceptor cells contain phosducin, a soluble phosphoprotein that complexes with the beta/gamma-subunits of the GTP-binding protein, transducin

Probab=94.72  E-value=0.37  Score=39.61  Aligned_cols=72  Identities=18%  Similarity=0.246  Sum_probs=49.9

Q ss_pred             CCcEEEEEEcCCCChhhHHHHHHHHHHHHHHHHcCcEEEEEeCCCHHHHHHHHHHcCCCeEEEEcCChhHHHHhCCCccC
Q 028030           94 GKPVVVYFYPADETPGCTKQACAFRDSYEKFKKAGAEVIGISGDDSSSHKAFAKKYRLPYTLLSDEGNKVRKEWGVPADF  173 (215)
Q Consensus        94 gk~~ll~f~~a~~C~~C~~~~~~l~~l~~~~~~~~v~vv~vs~d~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~g~~~~~  173 (215)
                      +.+|||.|| ...++.|...-..|..|+.+|+.  +.|+-|....                     - .+...|....  
T Consensus       146 ~~~VVVHiY-~~~~~~C~~mn~~L~~LA~kyp~--vKFvkI~a~~---------------------~-~~~~~f~~~~--  198 (265)
T PF02114_consen  146 STWVVVHIY-EPGFPRCEIMNSCLECLARKYPE--VKFVKIRASK---------------------C-PASENFPDKN--  198 (265)
T ss_dssp             T-EEEEEEE--TTSCCHHHHHHHHHHHHHH-TT--SEEEEEEECG---------------------C-CTTTTS-TTC--
T ss_pred             CcEEEEEEE-eCCCchHHHHHHHHHHHHHhCCc--eEEEEEehhc---------------------c-CcccCCcccC--
Confidence            456888888 99999999999999999999994  8888775311                     0 1334455554  


Q ss_pred             CCCCCccEEEEEcCCCcEEEEEeCC
Q 028030          174 FGSLPGRQTYILDKNGVVQLIYNNQ  198 (215)
Q Consensus       174 ~g~~p~~~~~lid~~G~v~~~~~g~  198 (215)
                         +|  +++++ ++|.++..+.+-
T Consensus       199 ---LP--tllvY-k~G~l~~~~V~l  217 (265)
T PF02114_consen  199 ---LP--TLLVY-KNGDLIGNFVGL  217 (265)
T ss_dssp             ----S--EEEEE-ETTEEEEEECTG
T ss_pred             ---CC--EEEEE-ECCEEEEeEEeh
Confidence               89  55555 799999998773

Light-induced changes in cyclic nucleotide levels modulate the phosphorylation of phosducin by protein kinase A []. The protein is thought to participate in the regulation of visual phototransduction or in the integration of photo-receptor metabolism. Similar proteins have been isolated from the pineal gland and it is believed that the functional role of the protein is the same in both retina and pineal gland []. This entry represents a domain found in members of the phosducin family. This domain has a thioredoxin-like fold [].; PDB: 2DBC_A 1A0R_P 1B9Y_C 1B9X_C 2TRC_P 3EVI_B.

>TIGR03759 conj_TIGR03759 integrating conjugative element protein, PFL_4693 family

Probab=94.71  E-value=0.46  Score=37.08  Aligned_cols=83  Identities=16%  Similarity=0.291  Sum_probs=57.3

Q ss_pred             CCcEEEEEEcCCCChhhHHHHHHHHHHHHHHHHcCcEEEEEe-CCCHHHHHHHHHHcCCCeE------EEEcCChhHHHH
Q 028030           94 GKPVVVYFYPADETPGCTKQACAFRDSYEKFKKAGAEVIGIS-GDDSSSHKAFAKKYRLPYT------LLSDEGNKVRKE  166 (215)
Q Consensus        94 gk~~ll~f~~a~~C~~C~~~~~~l~~l~~~~~~~~v~vv~vs-~d~~~~~~~~~~~~~~~~~------~~~d~~~~~~~~  166 (215)
                      +.-.+.+|. -..|+.|...+..+..     .+..+.|..|. ..+.+.++.|+..++++..      +-...+.--+..
T Consensus       108 ~~~rlalFv-kd~C~~C~~~~~~l~a-----~~~~~Diylvgs~~dD~~Ir~WA~~~~Idp~~V~~~~ITLNHD~G~w~~  181 (200)
T TIGR03759       108 GGGRLALFV-KDDCVACDARVQRLLA-----DNAPLDLYLVGSQGDDERIRQWANRHQIDPAKVRSRQITLNHDNGRWLQ  181 (200)
T ss_pred             CCCeEEEEe-CCCChHHHHHHHHHhc-----CCCceeEEEecCCCCHHHHHHHHHHcCCCHHHeecCeeEEecCcchHHH
Confidence            345788888 5899999988877733     23457777774 5788999999999999732      223334455677


Q ss_pred             hCCCccCCCCCCccEEEEEcCCC
Q 028030          167 WGVPADFFGSLPGRQTYILDKNG  189 (215)
Q Consensus       167 ~g~~~~~~g~~p~~~~~lid~~G  189 (215)
                      ||+.+    .+|   ++|...+|
T Consensus       182 lg~~g----~lP---~~l~q~~g  197 (200)
T TIGR03759       182 LGLQG----QLP---AVVQQVNG  197 (200)
T ss_pred             ccCCC----CCC---EEEEecCC
Confidence            78754    388   44555555

Members of this protein family, such as model protein PFL_4693 from Pseudomonas fluorescens Pf-5, belong to extended genomic regions that appear to be spread by conjugative transfer. Most members have a predicted N-terminal signal sequence. The function is unknown.

>PF07976 Phe_hydrox_dim: Phenol hydroxylase, C-terminal dimerisation domain ; InterPro: IPR012941 Phenol hydroxylase is a homodimer which hydroxylates phenol to catechol, or similar products

Probab=94.58  E-value=0.024  Score=43.38  Aligned_cols=109  Identities=17%  Similarity=0.278  Sum_probs=60.2

Q ss_pred             cccccCCCCCCCCCeEEeC-CCCCeeecCCc---CCCcEEEEEEcCCCChhhHHHHHHHHHHH-------HHHHHc----
Q 028030           63 SISAKVSKGQAPPSFTLKD-QEGRNVSLSKF---KGKPVVVYFYPADETPGCTKQACAFRDSY-------EKFKKA----  127 (215)
Q Consensus        63 ~~~~~~~~g~~~P~f~l~~-~~g~~~~l~~~---~gk~~ll~f~~a~~C~~C~~~~~~l~~l~-------~~~~~~----  127 (215)
                      .....+.+|..+|+..+.. .||+++.|.+.   .|++-|++|-...-.+.+...+..|.+..       .+|...    
T Consensus        25 ~~a~~l~~G~Rlp~~~v~r~aD~~p~~l~~~l~sdGrfri~vFagd~~~~~~~~~l~~l~~~L~~~~s~~~r~~~~~~~~  104 (169)
T PF07976_consen   25 SLAGGLRPGRRLPSAKVVRHADGNPVHLQDDLPSDGRFRILVFAGDISLPEQLSRLSALADYLESPSSFLSRFTPKDRDP  104 (169)
T ss_dssp             GGBTTS-TTCB----EEEETTTTEEEEGGGG--SSS-EEEEEEEETTTTCHCCCHHHHHHHHHHSTTSHHHHHSBTTS-T
T ss_pred             ccccCcCCccccCCceEEEEcCCCChhHhhhcccCCCEEEEEEeCCCccchhHHHHHHHHHHHHhcchHHHhcCCCCCCC
Confidence            3457889999999999876 79999999874   69999999983333444444444444432       233322    


Q ss_pred             --CcEEEEEeCCC---------HHHHHHHHHHcCCC-eEEEEcC------ChhHHHHhCCCc
Q 028030          128 --GAEVIGISGDD---------SSSHKAFAKKYRLP-YTLLSDE------GNKVRKEWGVPA  171 (215)
Q Consensus       128 --~v~vv~vs~d~---------~~~~~~~~~~~~~~-~~~~~d~------~~~~~~~~g~~~  171 (215)
                        -++++.|....         ++..+.+..++++. +.++.|.      .+++++.||+..
T Consensus       105 ~s~~~~~~I~~~~~~~~e~~dlP~~~~p~~~~~~~~~~~vy~Dd~~~~~~~g~~y~~~Gid~  166 (169)
T PF07976_consen  105 DSVFDVLLIHSSPRDEVELFDLPEIFRPFDGKRGWDYWKVYVDDESYHSGHGDAYEKYGIDR  166 (169)
T ss_dssp             TSSEEEEEEESS-CCCS-GGGS-CCCS-EETTTTC--SSEEE-S-SSSSTT--HHHHCTBBT
T ss_pred             CCeeEEEEEecCCCCceeHHHCcHhhCcccCCCCccceeEEecCcccccCcccHHHhhCCCc
Confidence              27888886432         22233333344554 4455554      477888888754

The enzyme is comprised of three domains. The first two domains form the active site. The third domain, this domain, is involved in forming the dimerisation interface. The domain adopts a thioredoxin-like fold [].; PDB: 2DKH_A 2DKI_A 1PN0_A 1FOH_D.

>TIGR02183 GRXA Glutaredoxin, GrxA family

Probab=94.55  E-value=0.16  Score=34.15  Aligned_cols=37  Identities=19%  Similarity=0.046  Sum_probs=25.5

Q ss_pred             EEEEEcCCCChhhHHHHHHHHHHHHHHHHcCcEEEEEeCC
Q 028030           98 VVYFYPADETPGCTKQACAFRDSYEKFKKAGAEVIGISGD  137 (215)
Q Consensus        98 ll~f~~a~~C~~C~~~~~~l~~l~~~~~~~~v~vv~vs~d  137 (215)
                      |+.|. .+||++|.+....|.++..++.  ++.+.-+..+
T Consensus         2 V~vys-~~~Cp~C~~ak~~L~~~~~~~~--~i~~~~idi~   38 (86)
T TIGR02183         2 VVIFG-RPGCPYCVRAKQLAEKLAIERA--DFEFRYIDIH   38 (86)
T ss_pred             EEEEe-CCCCccHHHHHHHHHHhCcccC--CCcEEEEECC
Confidence            34555 8999999998888887754433  4556666554

This model includes the E. coli glyutaredoxin GrxA which appears to have primary responsibility for the reduction of ribonucleotide reductase.

>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit

Probab=94.35  E-value=0.22  Score=45.33  Aligned_cols=79  Identities=15%  Similarity=0.149  Sum_probs=52.0

Q ss_pred             CCcEEEEEEcCCCChhhHHHHHHHHHHHHHHHHcCcEEEEEeCCCHHHHHHHHHHcCCCeEEEEcCChhHHHHhCCCccC
Q 028030           94 GKPVVVYFYPADETPGCTKQACAFRDSYEKFKKAGAEVIGISGDDSSSHKAFAKKYRLPYTLLSDEGNKVRKEWGVPADF  173 (215)
Q Consensus        94 gk~~ll~f~~a~~C~~C~~~~~~l~~l~~~~~~~~v~vv~vs~d~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~g~~~~~  173 (215)
                      ++..+-+|. +.+|+.|......+++++.+.+  ++..-.|..                     ....++...|++..  
T Consensus       476 ~~~~i~v~~-~~~C~~Cp~~~~~~~~~~~~~~--~i~~~~i~~---------------------~~~~~~~~~~~v~~--  529 (555)
T TIGR03143       476 KPVNIKIGV-SLSCTLCPDVVLAAQRIASLNP--NVEAEMIDV---------------------SHFPDLKDEYGIMS--  529 (555)
T ss_pred             CCeEEEEEE-CCCCCCcHHHHHHHHHHHHhCC--CceEEEEEC---------------------cccHHHHHhCCcee--
Confidence            344566677 9999999998888888877765  355444432                     22356777899987  


Q ss_pred             CCCCCccEEEEEcCCCcEEEEEeCCCCCCccHHHHHHHH
Q 028030          174 FGSLPGRQTYILDKNGVVQLIYNNQFQPEKHIDETLKFL  212 (215)
Q Consensus       174 ~g~~p~~~~~lid~~G~v~~~~~g~~~~~~~~~~il~~l  212 (215)
                         +|   .++||  |+++  +.|..    ..++++..|
T Consensus       530 ---vP---~~~i~--~~~~--~~G~~----~~~~~~~~~  554 (555)
T TIGR03143       530 ---VP---AIVVD--DQQV--YFGKK----TIEEMLELI  554 (555)
T ss_pred             ---cC---EEEEC--CEEE--EeeCC----CHHHHHHhh
Confidence               99   55564  5554  44533    345666654

This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).

>COG0695 GrxC Glutaredoxin and related proteins [Posttranslational modification, protein turnover, chaperones]

Probab=94.29  E-value=0.19  Score=33.32  Aligned_cols=44  Identities=16%  Similarity=0.313  Sum_probs=27.9

Q ss_pred             EEEEEcCCCChhhHHHHHHHHHHHHHHHHcCcEEEEEeCC--CHHHHHHHHHHc
Q 028030           98 VVYFYPADETPGCTKQACAFRDSYEKFKKAGAEVIGISGD--DSSSHKAFAKKY  149 (215)
Q Consensus        98 ll~f~~a~~C~~C~~~~~~l~~l~~~~~~~~v~vv~vs~d--~~~~~~~~~~~~  149 (215)
                      ++.|. -++||+|.+....|.       .+|+.+.-+..+  ..++.+++++..
T Consensus         3 v~iyt-~~~CPyC~~ak~~L~-------~~g~~~~~i~~~~~~~~~~~~~~~~~   48 (80)
T COG0695           3 VTIYT-KPGCPYCKRAKRLLD-------RKGVDYEEIDVDDDEPEEAREMVKRG   48 (80)
T ss_pred             EEEEE-CCCCchHHHHHHHHH-------HcCCCcEEEEecCCcHHHHHHHHHHh
Confidence            44555 788999998766555       446666665544  334666666654

>cd02972 DsbA_family DsbA family; consists of DsbA and DsbA-like proteins, including DsbC, DsbG, glutathione (GSH) S-transferase kappa (GSTK), 2-hydroxychromene-2-carboxylate (HCCA) isomerase, an oxidoreductase (FrnE) presumed to be involved in frenolicin biosynthesis, a 27-kDa outer membrane protein, and similar proteins

Probab=94.27  E-value=0.16  Score=33.85  Aligned_cols=36  Identities=17%  Similarity=0.161  Sum_probs=26.4

Q ss_pred             EEEEEcCCCChhhHHHHHHHHHHHHHHHHcCcEEEEEe
Q 028030           98 VVYFYPADETPGCTKQACAFRDSYEKFKKAGAEVIGIS  135 (215)
Q Consensus        98 ll~f~~a~~C~~C~~~~~~l~~l~~~~~~~~v~vv~vs  135 (215)
                      |..|+ ...|+.|....+.+.++...... ++++..+.
T Consensus         1 i~~f~-d~~Cp~C~~~~~~l~~~~~~~~~-~~~~~~~~   36 (98)
T cd02972           1 IVEFF-DPLCPYCYLFEPELEKLLYADDG-GVRVVYRP   36 (98)
T ss_pred             CeEEE-CCCCHhHHhhhHHHHHHHhhcCC-cEEEEEec
Confidence            35666 89999999999999998744433 46666554

Members of this family contain a redox active CXXC motif (except GSTK and HCCA isomerase) imbedded in a TRX fold, and an alpha helical insert of about 75 residues (shorter in DsbC and DsbG) relative to TRX. DsbA is involved in the oxidative protein folding pathway in prokaryotes, catalyzing disulfide bond formation of proteins secreted into the bacterial periplasm. DsbC and DsbG function as protein disulfide isomerases and chaperones to correct non-native disulfide bonds formed by DsbA and prevent aggregation of incorrectly folded proteins.

>cd03418 GRX_GRXb_1_3_like Glutaredoxin (GRX) family, GRX bacterial class 1 and 3 (b_1_3)-like subfamily; composed of bacterial GRXs, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain

Probab=94.26  E-value=0.24  Score=31.82  Aligned_cols=33  Identities=18%  Similarity=0.329  Sum_probs=23.3

Q ss_pred             EEEEEcCCCChhhHHHHHHHHHHHHHHHHcCcEEEEEeCCC
Q 028030           98 VVYFYPADETPGCTKQACAFRDSYEKFKKAGAEVIGISGDD  138 (215)
Q Consensus        98 ll~f~~a~~C~~C~~~~~~l~~l~~~~~~~~v~vv~vs~d~  138 (215)
                      |..|. .++|+.|......|++       .|+.+..+.++.
T Consensus         2 i~ly~-~~~Cp~C~~ak~~L~~-------~~i~~~~i~i~~   34 (75)
T cd03418           2 VEIYT-KPNCPYCVRAKALLDK-------KGVDYEEIDVDG   34 (75)
T ss_pred             EEEEe-CCCChHHHHHHHHHHH-------CCCcEEEEECCC
Confidence            44566 8999999987666654       467777776654

GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes are known i

>TIGR02189 GlrX-like_plant Glutaredoxin-like family

Probab=93.42  E-value=0.18  Score=34.88  Aligned_cols=32  Identities=19%  Similarity=0.065  Sum_probs=20.8

Q ss_pred             EEEEEcCCCChhhHHHHHHHHHHHHHHHHcCcEEEEEeCC
Q 028030           98 VVYFYPADETPGCTKQACAFRDSYEKFKKAGAEVIGISGD  137 (215)
Q Consensus        98 ll~f~~a~~C~~C~~~~~~l~~l~~~~~~~~v~vv~vs~d  137 (215)
                      |+.|. .+|||+|.+....|.++       |+.+-.+.+|
T Consensus        10 Vvvys-k~~Cp~C~~ak~~L~~~-------~i~~~~vdid   41 (99)
T TIGR02189        10 VVIFS-RSSCCMCHVVKRLLLTL-------GVNPAVHEID   41 (99)
T ss_pred             EEEEE-CCCCHHHHHHHHHHHHc-------CCCCEEEEcC
Confidence            55666 89999999776555443       4554455544

This family of glutaredoxin-like proteins is aparrently limited to plants. Multiple isoforms are found in A. thaliana and O.sativa.

>TIGR00365 monothiol glutaredoxin, Grx4 family

Probab=93.36  E-value=0.5  Score=32.55  Aligned_cols=48  Identities=15%  Similarity=0.148  Sum_probs=28.6

Q ss_pred             CCCcEEEEEEc---CCCChhhHHHHHHHHHHHHHHHHcCcEEEEEeCCCHHHHHHHHH
Q 028030           93 KGKPVVVYFYP---ADETPGCTKQACAFRDSYEKFKKAGAEVIGISGDDSSSHKAFAK  147 (215)
Q Consensus        93 ~gk~~ll~f~~---a~~C~~C~~~~~~l~~l~~~~~~~~v~vv~vs~d~~~~~~~~~~  147 (215)
                      ..+.++|+-..   .+|||+|.+....|.+       .|+.+..+.+++..++++.+.
T Consensus        10 ~~~~Vvvf~kg~~~~~~Cp~C~~ak~lL~~-------~~i~~~~~di~~~~~~~~~l~   60 (97)
T TIGR00365        10 KENPVVLYMKGTPQFPQCGFSARAVQILKA-------CGVPFAYVNVLEDPEIRQGIK   60 (97)
T ss_pred             ccCCEEEEEccCCCCCCCchHHHHHHHHHH-------cCCCEEEEECCCCHHHHHHHH
Confidence            34566666541   2799999987655554       367777776654444444443

The gene for the member of this glutaredoxin family in E. coli, originally designated ydhD, is now designated grxD. Its protein, Grx4, is a monothiol glutaredoxin similar to Grx5 of yeast, which is involved in iron-sulfur cluster formation.

>cd03029 GRX_hybridPRX5 Glutaredoxin (GRX) family, PRX5 hybrid subfamily; composed of hybrid proteins containing peroxiredoxin (PRX) and GRX domains, which is found in some pathogenic bacteria and cyanobacteria

Probab=93.05  E-value=0.54  Score=30.09  Aligned_cols=33  Identities=21%  Similarity=0.330  Sum_probs=22.6

Q ss_pred             EEEEEcCCCChhhHHHHHHHHHHHHHHHHcCcEEEEEeCCC
Q 028030           98 VVYFYPADETPGCTKQACAFRDSYEKFKKAGAEVIGISGDD  138 (215)
Q Consensus        98 ll~f~~a~~C~~C~~~~~~l~~l~~~~~~~~v~vv~vs~d~  138 (215)
                      |+.|. .+||+.|.+....|.+       .|+.+..+.++.
T Consensus         3 v~lys-~~~Cp~C~~ak~~L~~-------~~i~~~~~~v~~   35 (72)
T cd03029           3 VSLFT-KPGCPFCARAKAALQE-------NGISYEEIPLGK   35 (72)
T ss_pred             EEEEE-CCCCHHHHHHHHHHHH-------cCCCcEEEECCC
Confidence            44555 8999999988666553       466666666654

PRXs are thiol-specific antioxidant (TSA) proteins that confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins. PRX-GRX hybrid proteins from Haemophilus influenza and Neisseria meningitis exhibit GSH-dependent peroxidase activity. The flow of reducing equivalents in the catalytic cycle of the hybrid protein goes from NADPH - GSH reductase - GSH - GRX domain of hybrid - PRX domain of hybrid - peroxide substrate.

>TIGR02181 GRX_bact Glutaredoxin, GrxC family

Probab=92.91  E-value=0.37  Score=31.44  Aligned_cols=32  Identities=19%  Similarity=0.311  Sum_probs=22.1

Q ss_pred             EEEEcCCCChhhHHHHHHHHHHHHHHHHcCcEEEEEeCCC
Q 028030           99 VYFYPADETPGCTKQACAFRDSYEKFKKAGAEVIGISGDD  138 (215)
Q Consensus        99 l~f~~a~~C~~C~~~~~~l~~l~~~~~~~~v~vv~vs~d~  138 (215)
                      ..|+ ..+|+.|......|++       .|+.+--+.++.
T Consensus         2 ~ly~-~~~Cp~C~~a~~~L~~-------~~i~~~~~di~~   33 (79)
T TIGR02181         2 TIYT-KPYCPYCTRAKALLSS-------KGVTFTEIRVDG   33 (79)
T ss_pred             EEEe-cCCChhHHHHHHHHHH-------cCCCcEEEEecC
Confidence            4566 8999999988766654       356665565543

This family of glutaredoxins includes the E. coli protein GrxC (Grx3) which appears to have a secondary role in reducing ribonucleotide reductase (in the absence of GrxA) possibly indicating a role in the reduction of other protein disulfides.

>KOG3414 consensus Component of the U4/U6

Probab=92.89  E-value=2.3  Score=30.80  Aligned_cols=42  Identities=26%  Similarity=0.280  Sum_probs=33.8

Q ss_pred             CCCcEEEEEEcCCCChhhHHHHHHHHHHHHHHHHcCcEEEE-EeCC
Q 028030           93 KGKPVVVYFYPADETPGCTKQACAFRDSYEKFKKAGAEVIG-ISGD  137 (215)
Q Consensus        93 ~gk~~ll~f~~a~~C~~C~~~~~~l~~l~~~~~~~~v~vv~-vs~d  137 (215)
                      ..|.++|-|. ..|.|.|.+.=..|.+++++..+  +.+|. |..|
T Consensus        22 ~~rlvViRFG-r~~Dp~C~~mD~~L~~i~~~vsn--fa~Iylvdid   64 (142)
T KOG3414|consen   22 EERLVVIRFG-RDWDPTCMKMDELLSSIAEDVSN--FAVIYLVDID   64 (142)
T ss_pred             cceEEEEEec-CCCCchHhhHHHHHHHHHHHHhh--ceEEEEEecc
Confidence            3589999999 99999999999999999998884  55555 4444

U5 snRNP/mitosis protein DIM1 [RNA processing and modification; Cell cycle control, cell division, chromosome partitioning]

>KOG0914 consensus Thioredoxin-like protein [Posttranslational modification, protein turnover, chaperones]

Probab=92.87  E-value=0.16  Score=40.20  Aligned_cols=42  Identities=14%  Similarity=0.173  Sum_probs=35.7

Q ss_pred             CCcEEEEEEcCCCChhhHHHHHHHHHHHHHHHHcCcEEEEEeC
Q 028030           94 GKPVVVYFYPADETPGCTKQACAFRDSYEKFKKAGAEVIGISG  136 (215)
Q Consensus        94 gk~~ll~f~~a~~C~~C~~~~~~l~~l~~~~~~~~v~vv~vs~  136 (215)
                      .+.-||.|| ++|.+-|+...|-+.+|..+|...++.+=.|.+
T Consensus       144 ~t~WlIeFf-a~ws~~Cv~~spvfaeLS~kyn~~~lkFGkvDi  185 (265)
T KOG0914|consen  144 RTYWLIEFF-ACWSPKCVRFSPVFAELSIKYNNNLLKFGKVDI  185 (265)
T ss_pred             ceEEEEEEE-eecChhhcccccccHHHHHHhCCCCCcccceee
Confidence            457899999 999999999999999999999877666655543

>TIGR00995 3a0901s06TIC22 chloroplast protein import component, Tic22 family

Probab=92.86  E-value=0.8  Score=37.63  Aligned_cols=101  Identities=17%  Similarity=0.301  Sum_probs=62.5

Q ss_pred             CCCCCCCCeEEeCCCCCeeecCCcCC-CcEEEEEEcCCCChhhHHHHHHHHHHHHHHHHcCcEEEEEeCCCHHHHHHHHH
Q 028030           69 SKGQAPPSFTLKDQEGRNVSLSKFKG-KPVVVYFYPADETPGCTKQACAFRDSYEKFKKAGAEVIGISGDDSSSHKAFAK  147 (215)
Q Consensus        69 ~~g~~~P~f~l~~~~g~~~~l~~~~g-k~~ll~f~~a~~C~~C~~~~~~l~~l~~~~~~~~v~vv~vs~d~~~~~~~~~~  147 (215)
                      +.=+.+|-|++.|.+|..+-.+.-.| +.+-++|++ .  ......+.++++...+.. .+++|+.|+.+....+    +
T Consensus        77 ekL~~VPVFtItn~~G~pvl~s~~~~~~~~gvf~s~-q--edA~afL~~lk~~~p~l~-~~~kV~pvsL~~vYkl----~  148 (270)
T TIGR00995        77 KILAGTSVFTVSNAQNEFVLASDNDGEKSIGLLCFR-Q--EDAEAFLAQLRKRKPEVG-SQAKVVPITLDQVYKL----K  148 (270)
T ss_pred             HHhcCCceEEEEcCCCCeEEEECCCCCceEEEEECC-H--HHHHHHHHHHHhhCcccc-CCceEEEEEHHHHHHH----h
Confidence            34478999999999999988876545 555554431 1  224455555544444443 3699999999877655    3


Q ss_pred             HcCCCeEEEEcCChhHHHHhCCC---ccCCCCCC
Q 028030          148 KYRLPYTLLSDEGNKVRKEWGVP---ADFFGSLP  178 (215)
Q Consensus       148 ~~~~~~~~~~d~~~~~~~~~g~~---~~~~g~~p  178 (215)
                      ..++.|.++.|+. ++..+.++.   .+..+++|
T Consensus       149 ~e~l~F~fiP~~~-qV~~A~~ll~~~~~~~~GVP  181 (270)
T TIGR00995       149 VEGIGFRFLPDPA-QIKNALELPAANSEYFDGVP  181 (270)
T ss_pred             hcCccEEEeCCHH-HHHHHHHHHhcCccCCCCcc
Confidence            4557788887653 444444333   22334588

Two families of proteins are involved in the chloroplast envelope import appartus.They are the three proteins of the outer membrane (TOC) and four proteins in the inner membrane (TIC). This family is specific for the Tic22 protein.

>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional

Probab=92.61  E-value=1  Score=40.67  Aligned_cols=62  Identities=13%  Similarity=0.073  Sum_probs=42.6

Q ss_pred             CCCcEEEEEEcCCCChhhHHHHHHHHHHHHHHHHcCcEEEEEeCCCHHHHHHHHHHcCCCeEEEEcCChhHHHHhCCCcc
Q 028030           93 KGKPVVVYFYPADETPGCTKQACAFRDSYEKFKKAGAEVIGISGDDSSSHKAFAKKYRLPYTLLSDEGNKVRKEWGVPAD  172 (215)
Q Consensus        93 ~gk~~ll~f~~a~~C~~C~~~~~~l~~l~~~~~~~~v~vv~vs~d~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~g~~~~  172 (215)
                      .+...+..|. ...||+|......+++++...+  ++..-.|..                     ....++...|++.. 
T Consensus       115 ~~~~~i~~fv-~~~Cp~Cp~~v~~~~~~a~~~~--~i~~~~id~---------------------~~~~~~~~~~~v~~-  169 (517)
T PRK15317        115 DGDFHFETYV-SLSCHNCPDVVQALNLMAVLNP--NITHTMIDG---------------------ALFQDEVEARNIMA-  169 (517)
T ss_pred             CCCeEEEEEE-cCCCCCcHHHHHHHHHHHHhCC--CceEEEEEc---------------------hhCHhHHHhcCCcc-
Confidence            3455688888 9999999999898888877655  355444421                     23456777888876 


Q ss_pred             CCCCCCccEEEEEc
Q 028030          173 FFGSLPGRQTYILD  186 (215)
Q Consensus       173 ~~g~~p~~~~~lid  186 (215)
                          +|  ++| +|
T Consensus       170 ----VP--~~~-i~  176 (517)
T PRK15317        170 ----VP--TVF-LN  176 (517)
T ss_pred             ----cC--EEE-EC
Confidence                88  554 44

>cd03027 GRX_DEP Glutaredoxin (GRX) family, Dishevelled, Egl-10, and Pleckstrin (DEP) subfamily; composed of uncharacterized proteins containing a GRX domain and additional domains DEP and DUF547, both of which have unknown functions

Probab=92.48  E-value=0.66  Score=29.79  Aligned_cols=33  Identities=21%  Similarity=0.241  Sum_probs=23.4

Q ss_pred             EEEEEcCCCChhhHHHHHHHHHHHHHHHHcCcEEEEEeCCC
Q 028030           98 VVYFYPADETPGCTKQACAFRDSYEKFKKAGAEVIGISGDD  138 (215)
Q Consensus        98 ll~f~~a~~C~~C~~~~~~l~~l~~~~~~~~v~vv~vs~d~  138 (215)
                      |+.|. .++|+.|++....|.+       .|+.+..+.++.
T Consensus         3 v~ly~-~~~C~~C~ka~~~L~~-------~gi~~~~~di~~   35 (73)
T cd03027           3 VTIYS-RLGCEDCTAVRLFLRE-------KGLPYVEINIDI   35 (73)
T ss_pred             EEEEe-cCCChhHHHHHHHHHH-------CCCceEEEECCC
Confidence            34455 8999999988666664       467777777654

GRX is a glutathione (GSH) dependent reductase containing a redox active CXXC motif in a TRX fold. It has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. By altering the redox state of target proteins, GRX is involved in many cellular functions.

>PHA03050 glutaredoxin; Provisional

Probab=92.42  E-value=0.38  Score=33.92  Aligned_cols=22  Identities=18%  Similarity=0.187  Sum_probs=17.0

Q ss_pred             EEEEEcCCCChhhHHHHHHHHHH
Q 028030           98 VVYFYPADETPGCTKQACAFRDS  120 (215)
Q Consensus        98 ll~f~~a~~C~~C~~~~~~l~~l  120 (215)
                      |+.|. .+|||+|.+....|.++
T Consensus        15 V~vys-~~~CPyC~~ak~~L~~~   36 (108)
T PHA03050         15 VTIFV-KFTCPFCRNALDILNKF   36 (108)
T ss_pred             EEEEE-CCCChHHHHHHHHHHHc
Confidence            55666 89999999877666655

>cd03028 GRX_PICOT_like Glutaredoxin (GRX) family, PKC-interacting cousin of TRX (PICOT)-like subfamily; composed of PICOT and GRX-PICOT-like proteins

Probab=92.41  E-value=0.49  Score=31.99  Aligned_cols=46  Identities=13%  Similarity=0.083  Sum_probs=26.8

Q ss_pred             CCCcEEEEEEcC----CCChhhHHHHHHHHHHHHHHHHcCcEEEEEeCCCHHHHHHHH
Q 028030           93 KGKPVVVYFYPA----DETPGCTKQACAFRDSYEKFKKAGAEVIGISGDDSSSHKAFA  146 (215)
Q Consensus        93 ~gk~~ll~f~~a----~~C~~C~~~~~~l~~l~~~~~~~~v~vv~vs~d~~~~~~~~~  146 (215)
                      ++++++|+-- +    +||++|......|.+.       |+.+..+.++...++++.+
T Consensus         6 ~~~~vvvf~k-~~~~~~~Cp~C~~ak~~L~~~-------~i~y~~idv~~~~~~~~~l   55 (90)
T cd03028           6 KENPVVLFMK-GTPEEPRCGFSRKVVQILNQL-------GVDFGTFDILEDEEVRQGL   55 (90)
T ss_pred             ccCCEEEEEc-CCCCCCCCcHHHHHHHHHHHc-------CCCeEEEEcCCCHHHHHHH
Confidence            4456666543 3    5999999876655554       5666666654334433333

The non-PICOT members of this family contain only the GRX-like domain, whereas PICOT contains an N-terminal TRX-like domain followed by one to three GRX-like domains. It is interesting to note that PICOT from plants contain three repeats of the GRX-like domain, metazoan proteins (except for insect) have two repeats, while fungal sequences contain only one copy of the domain. PICOT is a protein that interacts with protein kinase C (PKC) theta, a calcium independent PKC isoform selectively expressed in skeletal muscle and T lymphocytes. PICOT inhibits the activation of c-Jun N-terminal kinase and the transcription factors, AP-1 and NF-kB, induced by PKC theta or T-cell activating stimuli. Both GRX and TRX domains of PICOT are required for its activity. Characterized non-PICOT members of this family include CXIP1, a CAX-interacting protein

>cd03032 ArsC_Spx Arsenate Reductase (ArsC) family, Spx subfamily; Spx is a unique RNA polymerase (RNAP)-binding protein present in bacilli and some mollicutes

Probab=92.17  E-value=0.33  Score=34.49  Aligned_cols=63  Identities=10%  Similarity=0.046  Sum_probs=43.8

Q ss_pred             EEcCCCChhhHHHHHHHHHHHHHHHHcCcEEEEEeC--C--CHHHHHHHHHHcCCCeEEEEcCChhHHHHhCCC
Q 028030          101 FYPADETPGCTKQACAFRDSYEKFKKAGAEVIGISG--D--DSSSHKAFAKKYRLPYTLLSDEGNKVRKEWGVP  170 (215)
Q Consensus       101 f~~a~~C~~C~~~~~~l~~l~~~~~~~~v~vv~vs~--d--~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~g~~  170 (215)
                      +|...+|+.|++....|.+       +|+.+..+..  +  +.+++++|++..+.++.-+....+..++..+..
T Consensus         4 iY~~~~C~~c~ka~~~L~~-------~gi~~~~idi~~~~~~~~el~~~~~~~~~~~~~l~n~~~~~~k~l~~~   70 (115)
T cd03032           4 LYTSPSCSSCRKAKQWLEE-------HQIPFEERNLFKQPLTKEELKEILSLTENGVEDIISTRSKAFKNLNID   70 (115)
T ss_pred             EEeCCCCHHHHHHHHHHHH-------CCCceEEEecCCCcchHHHHHHHHHHhcCCHHHHHhcCcHHHHHcCCC
Confidence            4448999999987655554       4666666655  2  458999999998776655555666667766654

It inhibits transcription by binding to the C-terminal domain of the alpha subunit of RNAP, disrupting complex formation between RNAP and certain transcriptional activator proteins like ResD and ComA. In response to oxidative stress, Spx can also activate transcription, making it a general regulator that exerts both positive and negative control over transcription initiation. Spx has been shown to exert redox-sensitive transcriptional control over genes like trxA (TRX) and trxB (TRX reductase), genes that function in thiol homeostasis. This redox-sensitive activity is dependent on the presence of a CXXC motif, present in some members of the Spx subfamily, that acts as a thiol/disulfide switch. Spx has also been shown to repress genes in a sulfate-dependent manner independent of the presence of the CXXC motif.

>PF05768 DUF836: Glutaredoxin-like domain (DUF836); InterPro: IPR008554 Glutaredoxins [, , ], also known as thioltransferases (disulphide reductases, are small proteins of approximately one hundred amino-acid residues which utilise glutathione and NADPH as cofactors

Probab=92.08  E-value=0.25  Score=32.74  Aligned_cols=39  Identities=8%  Similarity=0.101  Sum_probs=26.8

Q ss_pred             EEEEEcCCCChhhHHHHHHHHHHHHHHHHcCcEEEEEeCCCHH
Q 028030           98 VVYFYPADETPGCTKQACAFRDSYEKFKKAGAEVIGISGDDSS  140 (215)
Q Consensus        98 ll~f~~a~~C~~C~~~~~~l~~l~~~~~~~~v~vv~vs~d~~~  140 (215)
                      |+.|. ...|..|......|.++..+   .++.+..|.+++.+
T Consensus         2 l~l~~-k~~C~LC~~a~~~L~~~~~~---~~~~l~~vDI~~d~   40 (81)
T PF05768_consen    2 LTLYT-KPGCHLCDEAKEILEEVAAE---FPFELEEVDIDEDP   40 (81)
T ss_dssp             EEEEE--SSSHHHHHHHHHHHHCCTT---STCEEEEEETTTTH
T ss_pred             EEEEc-CCCCChHHHHHHHHHHHHhh---cCceEEEEECCCCH
Confidence            45566 88999999888777775433   34788888876443

Oxidized glutathione is regenerated by glutathione reductase. Together these components compose the glutathione system []. Glutaredoxin functions as an electron carrier in the glutathione-dependent synthesis of deoxyribonucleotides by the enzyme ribonucleotide reductase. Like thioredoxin, which functions in a similar way, glutaredoxin possesses an active centre disulphide bond []. It exists in either a reduced or an oxidized form where the two cysteine residues are linked in an intramolecular disulphide bond. Glutaredoxin has been sequenced in a variety of species. On the basis of extensive sequence similarity, it has been proposed [] that Vaccinia virus protein O2L is most probably a glutaredoxin. Finally, it must be noted that Bacteriophage T4 thioredoxin seems also to be evolutionary related. In position 5 of the pattern T4 thioredoxin has Val instead of Pro. This family contains several viral glutaredoxins, and many related bacterial and eukaryotic proteins of unknown function. The best characterised member of this family is G4L (P68460 from SWISSPROT) from Vaccinia virus (strain Western Reserve/WR) (VACV), which is necessary for virion morphogenesis and virus replication []. This is a cytomplasmic protein which functions as a shuttle in a redox pathway between membrane-associated E10R and L1R or F9L []. ; PDB: 1TTZ_A 1XPV_A 2FGX_A 2G2Q_C 1WJK_A.

>cd03036 ArsC_like Arsenate Reductase (ArsC) family, unknown subfamily; uncharacterized proteins containing a CXXC motif with similarity to thioredoxin (TRX)-fold arsenic reductases, ArsC

Probab=92.03  E-value=0.28  Score=34.65  Aligned_cols=62  Identities=19%  Similarity=0.312  Sum_probs=41.1

Q ss_pred             EcCCCChhhHHHHHHHHHHHHHHHHcCcEEEEEeC--C--CHHHHHHHHHHcCCCeEEEEcCChhHHHHhCCC
Q 028030          102 YPADETPGCTKQACAFRDSYEKFKKAGAEVIGISG--D--DSSSHKAFAKKYRLPYTLLSDEGNKVRKEWGVP  170 (215)
Q Consensus       102 ~~a~~C~~C~~~~~~l~~l~~~~~~~~v~vv~vs~--d--~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~g~~  170 (215)
                      |...+|+.|++...-|.+       +|+.+..+..  +  +.+++.+|++..+.++.-+....+..++..++.
T Consensus         4 Y~~~~C~~c~ka~~~L~~-------~~i~~~~idi~~~~~~~~el~~~~~~~~~~~~~l~~~~~~~~~~l~~~   69 (111)
T cd03036           4 YEYPKCSTCRKAKKWLDE-------HGVDYTAIDIVEEPPSKEELKKWLEKSGLPLKKFFNTSGKSYRELGLK   69 (111)
T ss_pred             EECCCCHHHHHHHHHHHH-------cCCceEEecccCCcccHHHHHHHHHHcCCCHHHHHhcCCchHHhCCcc
Confidence            338999999988655554       4666666554  2  457899999988876544444455555555553

Proteins containing a redox active CXXC motif like TRX and glutaredoxin (GRX) function as protein disulfide oxidoreductases, altering the redox state of target proteins via the reversible oxidation of the active site dithiol. ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from glutathione via GRX, through a single catalytic cysteine.

>TIGR01617 arsC_related transcriptional regulator, Spx/MgsR family

Probab=91.87  E-value=0.53  Score=33.52  Aligned_cols=62  Identities=10%  Similarity=0.008  Sum_probs=43.9

Q ss_pred             EEEcCCCChhhHHHHHHHHHHHHHHHHcCcEEEEEeCC----CHHHHHHHHHHcCCCeEEEEcCChhHHHHhCC
Q 028030          100 YFYPADETPGCTKQACAFRDSYEKFKKAGAEVIGISGD----DSSSHKAFAKKYRLPYTLLSDEGNKVRKEWGV  169 (215)
Q Consensus       100 ~f~~a~~C~~C~~~~~~l~~l~~~~~~~~v~vv~vs~d----~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~g~  169 (215)
                      .|+ ..+|+.|++....|.+       +|+.+..+...    +.+++.++++..+..+.-+....+..++.++.
T Consensus         3 iY~-~~~C~~c~ka~~~L~~-------~~i~~~~idi~~~~~~~~el~~l~~~~~~~~~~lin~~~~~~k~l~~   68 (117)
T TIGR01617         3 VYG-SPNCTTCKKARRWLEA-------NGIEYQFIDIGEDGPTREELLDILSLLEDGIDPLLNTRGQSYRALNT   68 (117)
T ss_pred             EEe-CCCCHHHHHHHHHHHH-------cCCceEEEecCCChhhHHHHHHHHHHcCCCHHHheeCCCcchhhCCc
Confidence            344 8999999988766655       46777666653    35789999999997766555566666666664

This model represents a portion of the proteins within the larger set covered by Pfam model pfam03960. That larger family includes a glutaredoxin-dependent arsenate reductase (TIGR00014). Characterized members of this family include Spx and MgsR from Bacillus subtili. Spx is a global regulator for response to thiol-specific oxidative stress. It interacts with RNA polymerase. MgsR (modulator of the general stress response, also called YqgZ) provides a second level of regulation for more than a third of the proteins in the B. subtilis general stress regulon controlled by Sigma-B.

>cd02983 P5_C P5 family, C-terminal redox inactive TRX-like domain; P5 is a protein disulfide isomerase (PDI)-related protein with a domain structure of aa'b (where a and a' are redox active TRX domains and b is a redox inactive TRX-like domain)

Probab=91.78  E-value=2.1  Score=31.10  Aligned_cols=78  Identities=14%  Similarity=0.209  Sum_probs=51.6

Q ss_pred             CcEEEEEEcCC--CChhh-HHHHHHHHHHHHHHHHcCcEEEEEeCCCHHHHHHHHHHcCCCeEEEEcCChhHHHHhCCCc
Q 028030           95 KPVVVYFYPAD--ETPGC-TKQACAFRDSYEKFKKAGAEVIGISGDDSSSHKAFAKKYRLPYTLLSDEGNKVRKEWGVPA  171 (215)
Q Consensus        95 k~~ll~f~~a~--~C~~C-~~~~~~l~~l~~~~~~~~v~vv~vs~d~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~g~~~  171 (215)
                      ++-+|.|.++.  +-+-+ ......|.+++++|+++.+.++.+..+..                     ..+.+.||+..
T Consensus        21 ~~C~i~~l~~~~d~~~e~~~~~~~~l~~vAk~~kgk~i~Fv~vd~~~~---------------------~~~~~~fgl~~   79 (130)
T cd02983          21 QLCIIAFLPHILDCQASCRNKYLEILKSVAEKFKKKPWGWLWTEAGAQ---------------------LDLEEALNIGG   79 (130)
T ss_pred             CeEEEEEcCccccCCHHHHHHHHHHHHHHHHHhcCCcEEEEEEeCccc---------------------HHHHHHcCCCc
Confidence            56788888543  22224 35677888888999887678888765432                     33667778753


Q ss_pred             cCCCCCCccEEEEEcCCCcEEEE-EeCCC
Q 028030          172 DFFGSLPGRQTYILDKNGVVQLI-YNNQF  199 (215)
Q Consensus       172 ~~~g~~p~~~~~lid~~G~v~~~-~~g~~  199 (215)
                      .   ..|  .+++++.++. ++. +.+.+
T Consensus        80 ~---~~P--~v~i~~~~~~-KY~~~~~~~  102 (130)
T cd02983          80 F---GYP--AMVAINFRKM-KFATLKGSF  102 (130)
T ss_pred             c---CCC--EEEEEecccC-ccccccCcc
Confidence            2   278  8999998876 555 55554

Like PDI, P5 is located in the endoplasmic reticulum (ER) and displays both isomerase and chaperone activities, which are independent of each other. Compared to PDI, the isomerase and chaperone activities of P5 are lower. The first cysteine in the CXXC motif of both redox active domains in P5 is necessary for isomerase activity. The P5 gene was first isolated as an amplified gene from a hydroxyurea-resistant hamster cell line. The zebrafish P5 homolog has been implicated to play a critical role in establishing left/right asymmetries in the embryonic midline. The C-terminal domain is likely involved in substrate binding, similar to the b and b' domains of PDI.

>PRK01655 spxA transcriptional regulator Spx; Reviewed

Probab=91.74  E-value=0.32  Score=35.53  Aligned_cols=63  Identities=10%  Similarity=0.075  Sum_probs=42.3

Q ss_pred             EEcCCCChhhHHHHHHHHHHHHHHHHcCcEEEEEeC--C--CHHHHHHHHHHcCCCeEEEEcCChhHHHHhCCC
Q 028030          101 FYPADETPGCTKQACAFRDSYEKFKKAGAEVIGISG--D--DSSSHKAFAKKYRLPYTLLSDEGNKVRKEWGVP  170 (215)
Q Consensus       101 f~~a~~C~~C~~~~~~l~~l~~~~~~~~v~vv~vs~--d--~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~g~~  170 (215)
                      +|...+|+.|++...-|.+       +|+.+..+..  +  +.+++.+|++..+..+.-+....+..++..+..
T Consensus         4 iY~~~~C~~C~ka~~~L~~-------~gi~~~~idi~~~~~~~~eL~~~l~~~~~g~~~lin~~~~~~k~l~~~   70 (131)
T PRK01655          4 LFTSPSCTSCRKAKAWLEE-------HDIPFTERNIFSSPLTIDEIKQILRMTEDGTDEIISTRSKVFQKLNVD   70 (131)
T ss_pred             EEeCCCChHHHHHHHHHHH-------cCCCcEEeeccCChhhHHHHHHHHHHhcCCHHHHHhcCcHHHHhCCCC
Confidence            4448999999987544443       4666666654  2  347899999998766555555566666666554

>PRK08294 phenol 2-monooxygenase; Provisional

Probab=91.31  E-value=1.6  Score=40.43  Aligned_cols=124  Identities=15%  Similarity=0.211  Sum_probs=73.1

Q ss_pred             cccCCCCCCCCCeEEeC-CCCCeeecCC-c--CCCcEEEEEEcCCCChhhHHHHHHHHHHH--------HHHHHcC----
Q 028030           65 SAKVSKGQAPPSFTLKD-QEGRNVSLSK-F--KGKPVVVYFYPADETPGCTKQACAFRDSY--------EKFKKAG----  128 (215)
Q Consensus        65 ~~~~~~g~~~P~f~l~~-~~g~~~~l~~-~--~gk~~ll~f~~a~~C~~C~~~~~~l~~l~--------~~~~~~~----  128 (215)
                      ...+.+|..+|++.+.. .+++++.|.+ +  .|++.|+.|-...-.+.....+..+.+..        .+|...+    
T Consensus       460 ~~~~~~G~r~~~~~v~~~~d~~~~~l~~~~~~~g~~~l~~f~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~  539 (634)
T PRK08294        460 ATGFPIGKRFHSAPVIRLADAKPVHLGHAATADGRWRIYAFADAADPAGPGSALDALCEFLAESPDSPLRRFTPSGADID  539 (634)
T ss_pred             ccCCCCceeCCCCceeeccCCCchhHhhhcccCCCEEEEEEcCCCCcchhHHHHHHHHHHHhhCccchHhhcCCCCCCCC
Confidence            35688999999999887 5788877764 3  58999999972222334444444333322        1111111    


Q ss_pred             --cEEEEEeCCC---------HHHHHHHHHHcCC-CeE-EEEcC--ChhHHHHhCCCccCCCCCCccEEEEEcCCCcEEE
Q 028030          129 --AEVIGISGDD---------SSSHKAFAKKYRL-PYT-LLSDE--GNKVRKEWGVPADFFGSLPGRQTYILDKNGVVQL  193 (215)
Q Consensus       129 --v~vv~vs~d~---------~~~~~~~~~~~~~-~~~-~~~d~--~~~~~~~~g~~~~~~g~~p~~~~~lid~~G~v~~  193 (215)
                        ++++.|....         ++..+.+-..+++ .|. ++.|.  ..+.++.||+..+    .-  .++++-|||-|-+
T Consensus       540 ~~~~~~~i~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~~~----~g--~~vvvRPD~~v~~  613 (634)
T PRK08294        540 AVIDVRAIFQQPHRELDLEDVPALLLPRKGRFGLTDYEKVFCADLSGADIFDLRGIDRD----RG--AVVVVRPDQYVAN  613 (634)
T ss_pred             cEEEEEEEecCCCCccchhhCcHhhCCcccccCccchhheecCCCchhhHHHhhCCCCC----ce--eEEEECCCCceEE
Confidence              5666665421         2223333334455 443 34442  3468899998752    22  8999999998865


Q ss_pred             E
Q 028030          194 I  194 (215)
Q Consensus       194 ~  194 (215)
                      .
T Consensus       614 ~  614 (634)
T PRK08294        614 V  614 (634)
T ss_pred             E
Confidence            4

>cd02977 ArsC_family Arsenate Reductase (ArsC) family; composed of TRX-fold arsenic reductases and similar proteins including the transcriptional regulator, Spx

Probab=91.15  E-value=0.41  Score=33.31  Aligned_cols=63  Identities=14%  Similarity=0.081  Sum_probs=40.3

Q ss_pred             EEEcCCCChhhHHHHHHHHHHHHHHHHcCcEEEEEeC----CCHHHHHHHHHHcCCCeEEEEcCChhHHHHhCCC
Q 028030          100 YFYPADETPGCTKQACAFRDSYEKFKKAGAEVIGISG----DDSSSHKAFAKKYRLPYTLLSDEGNKVRKEWGVP  170 (215)
Q Consensus       100 ~f~~a~~C~~C~~~~~~l~~l~~~~~~~~v~vv~vs~----d~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~g~~  170 (215)
                      .|. ..+|+.|++....|++       +|+.+..+..    .+.++++++....+..+.-+....+..++..+..
T Consensus         3 iY~-~~~C~~c~ka~~~L~~-------~~i~~~~idi~~~~~~~~~l~~~~~~~~~~~~~li~~~~~~~~~l~~~   69 (105)
T cd02977           3 IYG-NPNCSTSRKALAWLEE-------HGIEYEFIDYLKEPPTKEELKELLAKLGLGVEDLFNTRGTPYRKLGLA   69 (105)
T ss_pred             EEE-CCCCHHHHHHHHHHHH-------cCCCcEEEeeccCCCCHHHHHHHHHhcCCCHHHHHhcCCchHHHcCCc
Confidence            344 8999999988655554       4655555554    3468899999988865544444444555554443

ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from glutathione (GSH) via glutaredoxin (GRX), through a single catalytic cysteine. This family of predominantly bacterial enzymes is unrelated to two other families of arsenate reductases which show similarity to low-molecular-weight acid phosphatases and phosphotyrosyl phosphatases. Spx is a general regulator that exerts negative and positive control over transcription initiation by binding to the C-terminal domain of the alpha subunit of RNA polymerase.

>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional

Probab=91.11  E-value=1  Score=39.70  Aligned_cols=72  Identities=11%  Similarity=0.112  Sum_probs=56.6

Q ss_pred             ccccCCCCCCCCCeEEeCCCCCeeecCCcCCCcEEEEEEcCCCChhhHHHHHHHHHHHHHHHHcCcEEEEEeCC
Q 028030           64 ISAKVSKGQAPPSFTLKDQEGRNVSLSKFKGKPVVVYFYPADETPGCTKQACAFRDSYEKFKKAGAEVIGISGD  137 (215)
Q Consensus        64 ~~~~~~~g~~~P~f~l~~~~g~~~~l~~~~gk~~ll~f~~a~~C~~C~~~~~~l~~l~~~~~~~~v~vv~vs~d  137 (215)
                      +...+.-++.+-.+.+.-.+|+.+++.+++|..-+|..- ++- ..+...+...+...+++.++||-||.|..+
T Consensus       266 q~~ri~Ree~L~rL~v~l~~~~~v~l~~LRg~~RvvIvA-G~~-e~v~~al~~ae~~r~~L~~r~VlvVPv~~~  337 (453)
T PLN03098        266 QMSQITRDETLSRLPVRLSTNRIVELVQLRDITRPVILA-GTK-ESVTLAMQKAERYRTELLKRGVLLIPVVWG  337 (453)
T ss_pred             HHHHHHhhhhhccceEeccCCCEEeHHHhcCcceEEEEE-CCH-HHHHHHHHHhHHHHHHHHHcCcEEEEEecC
Confidence            445566677777777777678899999999976555544 443 678888999999999999999999998764

>PRK10638 glutaredoxin 3; Provisional

Probab=91.10  E-value=1.2  Score=29.34  Aligned_cols=34  Identities=18%  Similarity=0.292  Sum_probs=22.5

Q ss_pred             EEEEEcCCCChhhHHHHHHHHHHHHHHHHcCcEEEEEeCCCH
Q 028030           98 VVYFYPADETPGCTKQACAFRDSYEKFKKAGAEVIGISGDDS  139 (215)
Q Consensus        98 ll~f~~a~~C~~C~~~~~~l~~l~~~~~~~~v~vv~vs~d~~  139 (215)
                      +..|. ..||++|.+....|++       +|+.+.-+.++..
T Consensus         4 v~ly~-~~~Cp~C~~a~~~L~~-------~gi~y~~~dv~~~   37 (83)
T PRK10638          4 VEIYT-KATCPFCHRAKALLNS-------KGVSFQEIPIDGD   37 (83)
T ss_pred             EEEEE-CCCChhHHHHHHHHHH-------cCCCcEEEECCCC
Confidence            33444 8999999987666654       3666666666543

>KOG0911 consensus Glutaredoxin-related protein [Posttranslational modification, protein turnover, chaperones]

Probab=90.80  E-value=0.48  Score=37.67  Aligned_cols=61  Identities=20%  Similarity=0.265  Sum_probs=45.3

Q ss_pred             CCCcEEEEEEcCCCChhhHHHHHHHHHHHHHHHHcCcEEEEEeCCCHHHHHHHHHHcCCCeEEE
Q 028030           93 KGKPVVVYFYPADETPGCTKQACAFRDSYEKFKKAGAEVIGISGDDSSSHKAFAKKYRLPYTLL  156 (215)
Q Consensus        93 ~gk~~ll~f~~a~~C~~C~~~~~~l~~l~~~~~~~~v~vv~vs~d~~~~~~~~~~~~~~~~~~~  156 (215)
                      +++..++.|| +.||.+|......+..+.+..  .+++++-+..+.-.++....+--..++.+.
T Consensus        16 ~~~~~~~~f~-a~wa~~~~q~~~v~~~~~~~~--~~~~~~k~~a~~~~eis~~~~v~~vp~~~~   76 (227)
T KOG0911|consen   16 KGKLLVLHFW-AIWAVVQKQMDQVFDHLAEYF--KNAQFLKLEAEEFPEISNLIAVEAVPYFVF   76 (227)
T ss_pred             ccchhhhhhh-hhhhhhhhhHHHHHHHHHHhh--hhheeeeehhhhhhHHHHHHHHhcCceeee
Confidence            6789999999 999999998888888887766  357888887766555555555555554433

>PF08235 LNS2: LNS2 (Lipin/Ned1/Smp2); InterPro: IPR013209 This domain is found in Saccharomyces cerevisiae (Baker's yeast) protein SMP2, proteins with an N-terminal lipin domain (IPR007651 from INTERPRO) and phosphatidylinositol transfer proteins []

Probab=90.69  E-value=2.4  Score=32.01  Aligned_cols=62  Identities=13%  Similarity=0.259  Sum_probs=44.8

Q ss_pred             EeCCCCCeeecCCcCCCcEEEEEEcCCCChhhHHHHHHHHHHHHHHHHcCcEEEEEeCCC---HHHHHHHHHHc
Q 028030           79 LKDQEGRNVSLSKFKGKPVVVYFYPADETPGCTKQACAFRDSYEKFKKAGAEVIGISGDD---SSSHKAFAKKY  149 (215)
Q Consensus        79 l~~~~g~~~~l~~~~gk~~ll~f~~a~~C~~C~~~~~~l~~l~~~~~~~~v~vv~vs~d~---~~~~~~~~~~~  149 (215)
                      +.|.||. ++.+|..|...-+ .. .+      ...+...+++.++.++|..++.++.-.   ....+.|++..
T Consensus         3 vsDIDGT-iT~SD~~G~i~~~-~G-~d------~~h~g~~~l~~~i~~~GY~ilYlTaRp~~qa~~Tr~~L~~~   67 (157)
T PF08235_consen    3 VSDIDGT-ITKSDVLGHILPI-LG-KD------WTHPGAAELYRKIADNGYKILYLTARPIGQANRTRSWLAQH   67 (157)
T ss_pred             EEeccCC-cCccchhhhhhhc-cC-ch------hhhhcHHHHHHHHHHCCeEEEEECcCcHHHHHHHHHHHHHH
Confidence            5678886 7888877765332 22 33      345677788899999999999998743   46778888876

SMP2 is involved in plasmid maintenance and respiration []. Lipin proteins are involved in adipose tissue development and insulin resistance [].

>PRK10824 glutaredoxin-4; Provisional

Probab=90.43  E-value=0.77  Score=32.79  Aligned_cols=47  Identities=13%  Similarity=0.133  Sum_probs=27.9

Q ss_pred             CCcEEEEEEcC----CCChhhHHHHHHHHHHHHHHHHcCcEEEEEeCCCHHHHHHHHHH
Q 028030           94 GKPVVVYFYPA----DETPGCTKQACAFRDSYEKFKKAGAEVIGISGDDSSSHKAFAKK  148 (215)
Q Consensus        94 gk~~ll~f~~a----~~C~~C~~~~~~l~~l~~~~~~~~v~vv~vs~d~~~~~~~~~~~  148 (215)
                      .+.++|+-- +    ++||+|.+....|.++       |+.+-.+.+++..++++++.+
T Consensus        14 ~~~Vvvf~K-g~~~~p~Cpyc~~ak~lL~~~-------~i~~~~idi~~d~~~~~~l~~   64 (115)
T PRK10824         14 ENPILLYMK-GSPKLPSCGFSAQAVQALSAC-------GERFAYVDILQNPDIRAELPK   64 (115)
T ss_pred             cCCEEEEEC-CCCCCCCCchHHHHHHHHHHc-------CCCceEEEecCCHHHHHHHHH
Confidence            455666554 4    4999999887766654       455444555443445555544

>PRK12559 transcriptional regulator Spx; Provisional

Probab=90.01  E-value=0.71  Score=33.75  Aligned_cols=63  Identities=10%  Similarity=0.086  Sum_probs=42.0

Q ss_pred             EEcCCCChhhHHHHHHHHHHHHHHHHcCcEEEEEeC----CCHHHHHHHHHHcCCCeEEEEcCChhHHHHhCCC
Q 028030          101 FYPADETPGCTKQACAFRDSYEKFKKAGAEVIGISG----DDSSSHKAFAKKYRLPYTLLSDEGNKVRKEWGVP  170 (215)
Q Consensus       101 f~~a~~C~~C~~~~~~l~~l~~~~~~~~v~vv~vs~----d~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~g~~  170 (215)
                      +|...+|+.|++...-|.       ++|+.+..+..    -+.+++++|++..+..+.-+....++.++..+..
T Consensus         4 iY~~~~C~~crkA~~~L~-------~~gi~~~~~di~~~~~s~~el~~~l~~~~~g~~~lin~~~~~~k~l~~~   70 (131)
T PRK12559          4 LYTTASCASCRKAKAWLE-------ENQIDYTEKNIVSNSMTVDELKSILRLTEEGATEIISTRSKTFQDLNIN   70 (131)
T ss_pred             EEeCCCChHHHHHHHHHH-------HcCCCeEEEEeeCCcCCHHHHHHHHHHcCCCHHHHHhcCcHHHHhCCCC
Confidence            444899999998754444       34666666554    2568999999987666544445566666666654

>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit

Probab=89.51  E-value=1.8  Score=38.99  Aligned_cols=62  Identities=13%  Similarity=0.142  Sum_probs=41.9

Q ss_pred             CCCcEEEEEEcCCCChhhHHHHHHHHHHHHHHHHcCcEEEEEeCCCHHHHHHHHHHcCCCeEEEEcCChhHHHHhCCCcc
Q 028030           93 KGKPVVVYFYPADETPGCTKQACAFRDSYEKFKKAGAEVIGISGDDSSSHKAFAKKYRLPYTLLSDEGNKVRKEWGVPAD  172 (215)
Q Consensus        93 ~gk~~ll~f~~a~~C~~C~~~~~~l~~l~~~~~~~~v~vv~vs~d~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~g~~~~  172 (215)
                      .++..+..|. ...||+|......+++++.+.+  ++..-.|..                     ....++...|++.. 
T Consensus       116 ~~~~~i~~f~-~~~Cp~Cp~~v~~~~~~a~~~p--~i~~~~id~---------------------~~~~~~~~~~~v~~-  170 (515)
T TIGR03140       116 NGPLHFETYV-SLTCQNCPDVVQALNQMALLNP--NISHTMIDG---------------------ALFQDEVEALGIQG-  170 (515)
T ss_pred             CCCeEEEEEE-eCCCCCCHHHHHHHHHHHHhCC--CceEEEEEc---------------------hhCHHHHHhcCCcc-
Confidence            4556788888 9999999988888888877655  344333321                     12346667788876 


Q ss_pred             CCCCCCccEEEEEc
Q 028030          173 FFGSLPGRQTYILD  186 (215)
Q Consensus       173 ~~g~~p~~~~~lid  186 (215)
                          +|  ++| +|
T Consensus       171 ----VP--~~~-i~  177 (515)
T TIGR03140       171 ----VP--AVF-LN  177 (515)
T ss_pred             ----cC--EEE-EC
Confidence                88  554 44

This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.

>PF04278 Tic22: Tic22-like family; InterPro: IPR007378 Chloroplast function requires the import of nuclear encoded proteins from the cytoplasm across the chloroplast double membrane

Probab=89.21  E-value=1.7  Score=35.97  Aligned_cols=81  Identities=22%  Similarity=0.319  Sum_probs=40.4

Q ss_pred             CCCCCeEEeCCCCCeeecCCcC--CCcEEEEEEcCCCChhhHHHHH-HHHHHHHHHH--HcCcEEEEEeCCCHHHHHHHH
Q 028030           72 QAPPSFTLKDQEGRNVSLSKFK--GKPVVVYFYPADETPGCTKQAC-AFRDSYEKFK--KAGAEVIGISGDDSSSHKAFA  146 (215)
Q Consensus        72 ~~~P~f~l~~~~g~~~~l~~~~--gk~~ll~f~~a~~C~~C~~~~~-~l~~l~~~~~--~~~v~vv~vs~d~~~~~~~~~  146 (215)
                      +.+|-|++.|.+|.++-.+.-.  ++.+.++|+       |+.+.. .+.++..+.+  ..+++|+.|+.+...++.+-.
T Consensus        73 ~~VPVF~itn~~G~p~l~~~~~~~~~~v~~~F~-------s~~dA~~~L~~lk~~~p~~~~~~kV~pvsL~~vY~l~~~~  145 (274)
T PF04278_consen   73 AGVPVFTITNSQGEPVLVSGPDQGGKSVGLFFF-------SQQDAEAFLAQLKKSNPELASGAKVVPVSLGKVYQLAQEN  145 (274)
T ss_dssp             TTSEEEEEE-TT--B-----TTS--SEEEEEES--------HHHHHHHHHHHHH-SSHHHTT-EEEEEEHHHHHHHHHHT
T ss_pred             cCceEEEEECCCCCEEEeccCCCCCceEEEEEe-------cHHHHHHHHHHHhhhCccccCceEEEEecHHHHHHHHHHh
Confidence            7899999999999998776654  566666665       332222 2333433322  357999999997765543222


Q ss_pred             --HHcCCCeEEEEcC
Q 028030          147 --KKYRLPYTLLSDE  159 (215)
Q Consensus       147 --~~~~~~~~~~~d~  159 (215)
                        +..++.|.++.|.
T Consensus       146 ~~k~~~~~F~~vP~~  160 (274)
T PF04278_consen  146 KKKPEGLQFRFVPDP  160 (274)
T ss_dssp             TT-TT-EEEEEE--H
T ss_pred             hcCCcCceEEEcCCH
Confidence              3444557777764

This is accompished by two protein complexes, the Toc complex located at the outer membrane and the Tic complex loacted at the inner membrane []. The Toc complex recognises specific proteins by a cleavable N-terminal sequence and is primarily responsible for translocation through the outer membrane, while the Tic complex translocates the protein through the inner membrane. This entry represents Tic22, a core member of the Tic complex. It is believed to act as a link between both protein complexes, contacting the translocated protein in the intermembrane space after transport through the Toc complex, and directing it to the Tic complex [].; PDB: 4EV1_A.

>COG1651 DsbG Protein-disulfide isomerase [Posttranslational modification, protein turnover, chaperones]

Probab=89.17  E-value=0.91  Score=36.48  Aligned_cols=53  Identities=19%  Similarity=0.241  Sum_probs=39.0

Q ss_pred             eCCCCCeeecCCcCCCcEEEEEEcCCCChhhHHHHHHHHHHHHHHHHcCcEEEE
Q 028030           80 KDQEGRNVSLSKFKGKPVVVYFYPADETPGCTKQACAFRDSYEKFKKAGAEVIG  133 (215)
Q Consensus        80 ~~~~g~~~~l~~~~gk~~ll~f~~a~~C~~C~~~~~~l~~l~~~~~~~~v~vv~  133 (215)
                      ...++..+...+..++++++.|. -.-|++|...++.+.+.+...++..+.+.-
T Consensus        70 ~~~~~~~~~~G~~~~~v~v~~f~-d~~Cp~C~~~~~~l~~~~i~~~~~~~~~~~  122 (244)
T COG1651          70 LTPDGKDVVLGNPYAPVTVVEFF-DYTCPYCKEAFPELKKKYIDDGKVRLVLRE  122 (244)
T ss_pred             ecCCCCcccccCCCCCceEEEEe-cCcCccHHHHHHHHHHHhhhcCCCceEEEE
Confidence            34566666666666689999999 888999999999999977766654334333

>COG3019 Predicted metal-binding protein [General function prediction only]

Probab=89.03  E-value=5.6  Score=29.33  Aligned_cols=65  Identities=22%  Similarity=0.285  Sum_probs=39.9

Q ss_pred             EEEEcCCCChhhHHHHHHHHHHHHHHHHcCcEEEEEeCCCHHHHHHHHHHcCCCeEEEEcCChhHHHHhCCCccCCCCCC
Q 028030           99 VYFYPADETPGCTKQACAFRDSYEKFKKAGAEVIGISGDDSSSHKAFAKKYRLPYTLLSDEGNKVRKEWGVPADFFGSLP  178 (215)
Q Consensus        99 l~f~~a~~C~~C~~~~~~l~~l~~~~~~~~v~vv~vs~d~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~g~~~~~~g~~p  178 (215)
                      +.+|....|+=|..-+..       ++.+|++|=.+..|+-..+                     .+++|+..+    +.
T Consensus        28 ~~vyksPnCGCC~~w~~~-------mk~~Gf~Vk~~~~~d~~al---------------------K~~~gIp~e----~~   75 (149)
T COG3019          28 MVVYKSPNCGCCDEWAQH-------MKANGFEVKVVETDDFLAL---------------------KRRLGIPYE----MQ   75 (149)
T ss_pred             EEEEeCCCCccHHHHHHH-------HHhCCcEEEEeecCcHHHH---------------------HHhcCCChh----hc
Confidence            444448999988865444       4456899888877666543                     334555442    22


Q ss_pred             ccEEEEEcCCCcEEEEEeC
Q 028030          179 GRQTYILDKNGVVQLIYNN  197 (215)
Q Consensus       179 ~~~~~lid~~G~v~~~~~g  197 (215)
                      +=++.+|  +|+++.-+++
T Consensus        76 SCHT~VI--~Gy~vEGHVP   92 (149)
T COG3019          76 SCHTAVI--NGYYVEGHVP   92 (149)
T ss_pred             cccEEEE--cCEEEeccCC
Confidence            3367777  5777655544

>PRK13344 spxA transcriptional regulator Spx; Reviewed

Probab=88.98  E-value=1.2  Score=32.60  Aligned_cols=63  Identities=11%  Similarity=0.069  Sum_probs=42.9

Q ss_pred             EEcCCCChhhHHHHHHHHHHHHHHHHcCcEEEEEeC--C--CHHHHHHHHHHcCCCeEEEEcCChhHHHHhCCC
Q 028030          101 FYPADETPGCTKQACAFRDSYEKFKKAGAEVIGISG--D--DSSSHKAFAKKYRLPYTLLSDEGNKVRKEWGVP  170 (215)
Q Consensus       101 f~~a~~C~~C~~~~~~l~~l~~~~~~~~v~vv~vs~--d--~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~g~~  170 (215)
                      +|...+|+.|++...-|       +++|+.+..+..  +  +.+++++|++..+..+.-+....++.++..+..
T Consensus         4 iY~~~~C~~crkA~~~L-------~~~~i~~~~~d~~~~~~s~~eL~~~l~~~~~~~~~lin~~~~~~k~L~~~   70 (132)
T PRK13344          4 IYTISSCTSCKKAKTWL-------NAHQLSYKEQNLGKEPLTKEEILAILTKTENGIESIVSSKNRYAKALDCD   70 (132)
T ss_pred             EEeCCCCHHHHHHHHHH-------HHcCCCeEEEECCCCCCCHHHHHHHHHHhCCCHHHhhccCcHHHHhCCcc
Confidence            44489999999864333       444677666654  2  468999999998877655555666666666544

>COG1331 Highly conserved protein containing a thioredoxin domain [Posttranslational modification, protein turnover, chaperones]

Probab=88.56  E-value=0.92  Score=41.80  Aligned_cols=21  Identities=19%  Similarity=0.278  Sum_probs=18.1

Q ss_pred             CCCcEEEEEEcCCCChhhHHHH
Q 028030           93 KGKPVVVYFYPADETPGCTKQA  114 (215)
Q Consensus        93 ~gk~~ll~f~~a~~C~~C~~~~  114 (215)
                      .+|+++|... .+||..|.-..
T Consensus        42 edkPIflSIG-ys~CHWChVM~   62 (667)
T COG1331          42 EDKPILLSIG-YSTCHWCHVMA   62 (667)
T ss_pred             hCCCEEEEec-cccccchHHHh
Confidence            5799999999 89999998543

>COG2179 Predicted hydrolase of the HAD superfamily [General function prediction only]

Probab=88.46  E-value=2.6  Score=32.15  Aligned_cols=46  Identities=22%  Similarity=0.327  Sum_probs=40.7

Q ss_pred             HHHHHHHHHHHHHHHcCcEEEEEeCCCHHHHHHHHHHcCCCeEEEE
Q 028030          112 KQACAFRDSYEKFKKAGAEVIGISGDDSSSHKAFAKKYRLPYTLLS  157 (215)
Q Consensus       112 ~~~~~l~~l~~~~~~~~v~vv~vs~d~~~~~~~~~~~~~~~~~~~~  157 (215)
                      ...|.+.++.++.++.|+.++-+|-+.+..++.|.+.++++|..-.
T Consensus        46 ~~tpe~~~W~~e~k~~gi~v~vvSNn~e~RV~~~~~~l~v~fi~~A   91 (175)
T COG2179          46 DATPELRAWLAELKEAGIKVVVVSNNKESRVARAAEKLGVPFIYRA   91 (175)
T ss_pred             CCCHHHHHHHHHHHhcCCEEEEEeCCCHHHHHhhhhhcCCceeecc
Confidence            4567899999999999999999999999999999999999976543

>PF13848 Thioredoxin_6: Thioredoxin-like domain; PDB: 3EC3_B 3BOA_A 2B5E_A 1BJX_A 2K18_A 3UEM_A 3BJ5_A 2BJX_A 2R2J_A 2L4C_A

Probab=87.78  E-value=8.3  Score=28.98  Aligned_cols=88  Identities=24%  Similarity=0.345  Sum_probs=50.9

Q ss_pred             CCc-EEEEEEcCCCChhhHHHHHHHHHHHHHHHHcCcEEEEEeCCCHHHHHHHHHHcCCCeEEEEcCChhHHHHhCCCcc
Q 028030           94 GKP-VVVYFYPADETPGCTKQACAFRDSYEKFKKAGAEVIGISGDDSSSHKAFAKKYRLPYTLLSDEGNKVRKEWGVPAD  172 (215)
Q Consensus        94 gk~-~ll~f~~a~~C~~C~~~~~~l~~l~~~~~~~~v~vv~vs~d~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~g~~~~  172 (215)
                      +++ +++.|. .............+.+++.+++++ +.++.+..+                     ....+...+|+...
T Consensus        94 ~~~~~~~~~~-~~~~~~~~~~~~~l~~~a~~~~~~-~~f~~~d~~---------------------~~~~~~~~~~i~~~  150 (184)
T PF13848_consen   94 PKPPVLILFD-NKDNESTEAFKKELQDIAKKFKGK-INFVYVDAD---------------------DFPRLLKYFGIDED  150 (184)
T ss_dssp             SSEEEEEEEE-TTTHHHHHHHHHHHHHHHHCTTTT-SEEEEEETT---------------------TTHHHHHHTTTTTS
T ss_pred             CCceEEEEEE-cCCchhHHHHHHHHHHHHHhcCCe-EEEEEeehH---------------------HhHHHHHHcCCCCc
Confidence            344 555555 444555666667777777777654 666666543                     22456667777631


Q ss_pred             CCCCCCccEEEEEcCCCcEE-EEEeCCCCCCccHHHHHHHHh
Q 028030          173 FFGSLPGRQTYILDKNGVVQ-LIYNNQFQPEKHIDETLKFLQ  213 (215)
Q Consensus       173 ~~g~~p~~~~~lid~~G~v~-~~~~g~~~~~~~~~~il~~l~  213 (215)
                         .+|  .+++++.+..-. +...+    .-..+.+.+.|+
T Consensus       151 ---~~P--~~vi~~~~~~~~~~~~~~----~~~~~~i~~Fl~  183 (184)
T PF13848_consen  151 ---DLP--ALVIFDSNKGKYYYLPEG----EITPESIEKFLN  183 (184)
T ss_dssp             ---SSS--EEEEEETTTSEEEE--SS----CGCHHHHHHHHH
T ss_pred             ---cCC--EEEEEECCCCcEEcCCCC----CCCHHHHHHHhc
Confidence               278  999999555433 32322    344566666664

...

>cd03035 ArsC_Yffb Arsenate Reductase (ArsC) family, Yffb subfamily; Yffb is an uncharacterized bacterial protein encoded by the yffb gene, related to the thioredoxin-fold arsenic reductases, ArsC

Probab=87.53  E-value=1  Score=31.56  Aligned_cols=60  Identities=12%  Similarity=0.083  Sum_probs=37.0

Q ss_pred             EEcCCCChhhHHHHHHHHHHHHHHHHcCcEEEEEeC--C--CHHHHHHHHHHcCCCeEEEEcCChhHHHHhCC
Q 028030          101 FYPADETPGCTKQACAFRDSYEKFKKAGAEVIGISG--D--DSSSHKAFAKKYRLPYTLLSDEGNKVRKEWGV  169 (215)
Q Consensus       101 f~~a~~C~~C~~~~~~l~~l~~~~~~~~v~vv~vs~--d--~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~g~  169 (215)
                      +|...+|+.|++...-|.+       +|+.+-.+..  +  +.+++++|++..|+  .-+....+..++.++.
T Consensus         3 iy~~~~C~~crka~~~L~~-------~~i~~~~~di~~~p~s~~eL~~~l~~~g~--~~li~~~~~~yk~l~l   66 (105)
T cd03035           3 LYGIKNCDTVKKARKWLEA-------RGVAYTFHDYRKDGLDAATLERWLAKVGW--ETLLNKRGTTWRKLDD   66 (105)
T ss_pred             EEeCCCCHHHHHHHHHHHH-------cCCCeEEEecccCCCCHHHHHHHHHHhCh--HHHHccCchHHHhCCh
Confidence            3438999999987655544       3666655554  2  56899999998873  2222234444544444

The structure of Yffb and the conservation of the catalytic cysteine suggest that it is likely to function as a glutathione (GSH)-dependent thiol reductase. ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from GSH via glutaredoxin, through a single catalytic cysteine.

>PRK06184 hypothetical protein; Provisional

Probab=87.28  E-value=6.9  Score=35.04  Aligned_cols=94  Identities=16%  Similarity=0.268  Sum_probs=63.5

Q ss_pred             cCCCCCCCCCeEEeCCCCCeeecCCc-C-CCcEEEEEEcCCCChhhHHHHHHHHHHHHHHHHcCcEEEEEeCCCHHHHHH
Q 028030           67 KVSKGQAPPSFTLKDQEGRNVSLSKF-K-GKPVVVYFYPADETPGCTKQACAFRDSYEKFKKAGAEVIGISGDDSSSHKA  144 (215)
Q Consensus        67 ~~~~g~~~P~f~l~~~~g~~~~l~~~-~-gk~~ll~f~~a~~C~~C~~~~~~l~~l~~~~~~~~v~vv~vs~d~~~~~~~  144 (215)
                      .+.+|..+|+..+...+|+.+++.|+ . ++++||.|-...+  ..      .       ...++.++.+....      
T Consensus       385 ~~~~G~r~p~~~~~~~~~~~~~l~d~~~~~~~~ll~~~~~~~--~~------~-------~~~~~~~~~~~~~~------  443 (502)
T PRK06184        385 GLRAGDRAPDAPLLGAAGQPTRLFDLFRGPHWTLLAFGAGAA--AI------L-------ARRGLRIHRVGDAA------  443 (502)
T ss_pred             CCCCcCCCCCchhccCCCceeeHHHhhCCCcEEEEEecCCch--hh------h-------hhcCceEEEecccC------
Confidence            46789999999988777877777665 4 5899998752222  11      0       12356666553211      


Q ss_pred             HHHHcCCCeEEEEcCChhHHHHhCCCccCCCCCCccEEEEEcCCCcEEEEEe
Q 028030          145 FAKKYRLPYTLLSDEGNKVRKEWGVPADFFGSLPGRQTYILDKNGVVQLIYN  196 (215)
Q Consensus       145 ~~~~~~~~~~~~~d~~~~~~~~~g~~~~~~g~~p~~~~~lid~~G~v~~~~~  196 (215)
                             ....+.|.++.+...|++..      .  ..+||-|||-|-+...
T Consensus       444 -------~~~~~~d~~g~~~~~~~~~~------~--~~~lvRPDg~v~~~~~  480 (502)
T PRK06184        444 -------EGGDLVDDAGHFRDAYGLTG------G--TLVLVRPDGYVGLIAA  480 (502)
T ss_pred             -------CCCceeCCCccHHHHhcCCC------C--cEEEECCCcceEEEec
Confidence                   12235788889999998874      2  6899999999987753

>PRK10026 arsenate reductase; Provisional

Probab=87.12  E-value=2.3  Score=31.48  Aligned_cols=87  Identities=15%  Similarity=0.125  Sum_probs=52.6

Q ss_pred             EEcCCCChhhHHHHHHHHHHHHHHHHcCcEEEEEeC--C--CHHHHHHHHHHcCCCeEEEEcCChhHHHHhCCCccCCC-
Q 028030          101 FYPADETPGCTKQACAFRDSYEKFKKAGAEVIGISG--D--DSSSHKAFAKKYRLPYTLLSDEGNKVRKEWGVPADFFG-  175 (215)
Q Consensus       101 f~~a~~C~~C~~~~~~l~~l~~~~~~~~v~vv~vs~--d--~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~g~~~~~~g-  175 (215)
                      +|....|..|++.+.-|.+.       |+.+..+..  +  +.+++++|++..+..+.-+....+..++.++....... 
T Consensus         6 iY~~p~Cst~RKA~~wL~~~-------gi~~~~~d~~~~ppt~~eL~~~l~~~g~~~~~lint~~~~yr~L~~~~~~ls~   78 (141)
T PRK10026          6 IYHNPACGTSRNTLEMIRNS-------GTEPTIIHYLETPPTRDELVKLIADMGISVRALLRKNVEPYEELGLAEDKFTD   78 (141)
T ss_pred             EEeCCCCHHHHHHHHHHHHC-------CCCcEEEeeeCCCcCHHHHHHHHHhCCCCHHHHHHcCCchHHHcCCCccCCCH
Confidence            44378899999886655543       555555543  3  56899999999887544444445556666555421100 


Q ss_pred             --------CCC--ccEEEEEcCCCcEEEE
Q 028030          176 --------SLP--GRQTYILDKNGVVQLI  194 (215)
Q Consensus       176 --------~~p--~~~~~lid~~G~v~~~  194 (215)
                              .-|  ..+=+|++.+|.++.+
T Consensus        79 ~e~l~ll~~~P~LIKRPIi~~~~~a~i~R  107 (141)
T PRK10026         79 DQLIDFMLQHPILINRPIVVTPLGTRLCR  107 (141)
T ss_pred             HHHHHHHHhCccceeCcEEEcCCCeEEEC
Confidence                    011  1244778888877654

>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit

Probab=86.87  E-value=2.9  Score=38.06  Aligned_cols=75  Identities=9%  Similarity=0.165  Sum_probs=45.2

Q ss_pred             CCcCCCcEEEEEEcCCCChhhHHHHHHHHHHHHHHHHcCcEEEEEeCCCHHHHHHHHHHcCCCeEEEEcCChhHHHHhCC
Q 028030           90 SKFKGKPVVVYFYPADETPGCTKQACAFRDSYEKFKKAGAEVIGISGDDSSSHKAFAKKYRLPYTLLSDEGNKVRKEWGV  169 (215)
Q Consensus        90 ~~~~gk~~ll~f~~a~~C~~C~~~~~~l~~l~~~~~~~~v~vv~vs~d~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~g~  169 (215)
                      .++++.+.|+.|+ ...|..|......|+++. ++.++ +.+.....                     +.+.++++.|++
T Consensus       362 ~~l~~~v~l~~~~-~~~~~~~~e~~~~l~e~~-~~s~~-i~~~~~~~---------------------~~~~~~~~~~~v  417 (555)
T TIGR03143       362 GRLENPVTLLLFL-DGSNEKSAELQSFLGEFA-SLSEK-LNSEAVNR---------------------GEEPESETLPKI  417 (555)
T ss_pred             HhcCCCEEEEEEE-CCCchhhHHHHHHHHHHH-hcCCc-EEEEEecc---------------------ccchhhHhhcCC
Confidence            3456667777888 666777876666666654 33332 33332221                     234567778888


Q ss_pred             CccCCCCCCccEEEEEcCCCc---EEEEE
Q 028030          170 PADFFGSLPGRQTYILDKNGV---VQLIY  195 (215)
Q Consensus       170 ~~~~~g~~p~~~~~lid~~G~---v~~~~  195 (215)
                      ..     .|  .+.++|.+|.   |++..
T Consensus       418 ~~-----~P--~~~i~~~~~~~~~i~f~g  439 (555)
T TIGR03143       418 TK-----LP--TVALLDDDGNYTGLKFHG  439 (555)
T ss_pred             Cc-----CC--EEEEEeCCCcccceEEEe
Confidence            76     78  7888876653   55443

This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).

>PRK06183 mhpA 3-(3-hydroxyphenyl)propionate hydroxylase; Validated

Probab=86.82  E-value=8.2  Score=34.93  Aligned_cols=117  Identities=15%  Similarity=0.092  Sum_probs=71.8

Q ss_pred             CCCCCCCCCeEEeCCCCCeeecCCcCC-CcEEEEEEcCCCChhhHHHHHHHHHHHHHHHHcCcEEEEEeCCCHHHHHHHH
Q 028030           68 VSKGQAPPSFTLKDQEGRNVSLSKFKG-KPVVVYFYPADETPGCTKQACAFRDSYEKFKKAGAEVIGISGDDSSSHKAFA  146 (215)
Q Consensus        68 ~~~g~~~P~f~l~~~~g~~~~l~~~~g-k~~ll~f~~a~~C~~C~~~~~~l~~l~~~~~~~~v~vv~vs~d~~~~~~~~~  146 (215)
                      ..+|..+|+..+.+.+|....+.++.| .++||.|- ..  +..... +..   .+.+...+..++.+........    
T Consensus       411 ~~~G~~~p~~~~~~~~~~~~~~d~~~~~~~~ll~~~-~~--~~~~~~-~~~---~~~~~~~~~~~~~~~~~~~~~~----  479 (538)
T PRK06183        411 SPVGTLFPQPRVELGGGDRGLLDDVLGPGFAVLGWG-CD--PLAGLS-DEQ---RARWRALGARFVQVVPAVQAHT----  479 (538)
T ss_pred             CCcccCcCCCeeEcCCCCcccchhccCCceEEEEec-CC--chhcCC-HHH---HHHHHHcCCeEEEEeccccccc----
Confidence            458999999998877665555666755 68888774 22  111100 111   1224445677777654321110    


Q ss_pred             HHcCCCeEEEEcCChhHHHHhCCCccCCCCCCccEEEEEcCCCcEEEEEeCCCCCCccHHHHHHHH
Q 028030          147 KKYRLPYTLLSDEGNKVRKEWGVPADFFGSLPGRQTYILDKNGVVQLIYNNQFQPEKHIDETLKFL  212 (215)
Q Consensus       147 ~~~~~~~~~~~d~~~~~~~~~g~~~~~~g~~p~~~~~lid~~G~v~~~~~g~~~~~~~~~~il~~l  212 (215)
                          -....+.|.++.+...|+...      .  ..+||-||+-|-.....     ...+.++..|
T Consensus       480 ----~~~~~~~d~~g~~~~~~~~~~------~--~~~lvRPD~~v~~~~~~-----~~~~~~~~~l  528 (538)
T PRK06183        480 ----AQDDHDSDVDGALRAWLARHG------A--SAVLLRPDRYVAAAADA-----QTLGALLAAL  528 (538)
T ss_pred             ----CCCceeecCCchHHHHHHhCC------C--EEEEECCCEEEEEeeCH-----HHHHHHHHHH
Confidence                234567899999999999874      3  68999999999865432     2345555444

>PTZ00062 glutaredoxin; Provisional

Probab=86.79  E-value=2.8  Score=33.11  Aligned_cols=49  Identities=4%  Similarity=-0.031  Sum_probs=28.8

Q ss_pred             CCCcEEEEEEc---CCCChhhHHHHHHHHHHHHHHHHcCcEEEEEeCCCHHHHHHHHHH
Q 028030           93 KGKPVVVYFYP---ADETPGCTKQACAFRDSYEKFKKAGAEVIGISGDDSSSHKAFAKK  148 (215)
Q Consensus        93 ~gk~~ll~f~~---a~~C~~C~~~~~~l~~l~~~~~~~~v~vv~vs~d~~~~~~~~~~~  148 (215)
                      ..++++|+--.   .++|++|++....|++       .|+.+..+.+++.+++++.+.+
T Consensus       111 ~~~~Vvvf~Kg~~~~p~C~~C~~~k~~L~~-------~~i~y~~~DI~~d~~~~~~l~~  162 (204)
T PTZ00062        111 RNHKILLFMKGSKTFPFCRFSNAVVNMLNS-------SGVKYETYNIFEDPDLREELKV  162 (204)
T ss_pred             hcCCEEEEEccCCCCCCChhHHHHHHHHHH-------cCCCEEEEEcCCCHHHHHHHHH
Confidence            34566666551   2588888877555553       3677666666544555444443

>KOG4614 consensus Inner membrane protein required for assembly of the F0 sector of ATP synthase [Posttranslational modification, protein turnover, chaperones]

Probab=84.08  E-value=1.5  Score=35.20  Aligned_cols=34  Identities=21%  Similarity=0.305  Sum_probs=25.8

Q ss_pred             ccEEEEEcCCCcEEEEEeCCCCCCccHHHHHHHHh
Q 028030          179 GRQTYILDKNGVVQLIYNNQFQPEKHIDETLKFLQ  213 (215)
Q Consensus       179 ~~~~~lid~~G~v~~~~~g~~~~~~~~~~il~~l~  213 (215)
                      +..++|+|++|+|++..-|+..++ .+++++++.+
T Consensus       248 ~GyV~L~D~s~kIRW~g~G~aTp~-Eve~L~~~~k  281 (287)
T KOG4614|consen  248 TGYVLLLDKSGKIRWQGFGTATPE-EVEQLLSCTK  281 (287)
T ss_pred             eEEEEEEccCceEEEeecCCCCHH-HHHHHHHHHH
Confidence            458899999999999998876554 3666666543

>PRK08132 FAD-dependent oxidoreductase; Provisional

Probab=84.03  E-value=9.5  Score=34.57  Aligned_cols=116  Identities=12%  Similarity=0.179  Sum_probs=70.6

Q ss_pred             cCCCCCCCCCeEEeCCCCCeeecCCcCC-CcEEEEEEcCCCChhhHHHHHHHHHHHHHHHHcCcEEEEEeCCCHHHHHHH
Q 028030           67 KVSKGQAPPSFTLKDQEGRNVSLSKFKG-KPVVVYFYPADETPGCTKQACAFRDSYEKFKKAGAEVIGISGDDSSSHKAF  145 (215)
Q Consensus        67 ~~~~g~~~P~f~l~~~~g~~~~l~~~~g-k~~ll~f~~a~~C~~C~~~~~~l~~l~~~~~~~~v~vv~vs~d~~~~~~~~  145 (215)
                      ...+|..+|+..+. .+|+.+++.|+.| +++||.|- .. ...     ....+.. .....++.++.+..+....    
T Consensus       426 ~~~pG~r~p~~~~~-~~~~~~~l~dl~g~~f~ll~~~-~~-~~~-----~~~~~~~-~~~~~~~~~~~~~~~~~~~----  492 (547)
T PRK08132        426 GPVPGAPAPDAPVR-ADGEPGWLLDLLGGGFTLLLFG-DD-AAA-----AALLQAL-AAAALPVRVVAVVPAGAAQ----  492 (547)
T ss_pred             CCCCCCCCCCCccc-CCCCceEHHHhcCCCEEEEEec-CC-chh-----hhhhhhh-hccCCceEEEEEecCcccc----
Confidence            46689999999887 4576778888744 67888775 21 111     1111111 1122245565554432110    


Q ss_pred             HHHcCCCeEEEEcCChhHHHHhCCCccCCCCCCccEEEEEcCCCcEEEEEeCCCCCCccHHHHHHHHh
Q 028030          146 AKKYRLPYTLLSDEGNKVRKEWGVPADFFGSLPGRQTYILDKNGVVQLIYNNQFQPEKHIDETLKFLQ  213 (215)
Q Consensus       146 ~~~~~~~~~~~~d~~~~~~~~~g~~~~~~g~~p~~~~~lid~~G~v~~~~~g~~~~~~~~~~il~~l~  213 (215)
                           .+...+.|.++.+.+.|++..      .  ..+||-|||-|-+.+..     ..++.+++.|+
T Consensus       493 -----~~~~~~~d~~~~~~~~~~~~~------~--~~~LvRPDg~va~~~~~-----~~~~~~~~~l~  542 (547)
T PRK08132        493 -----AAAGVLEDADGLAAERYDARP------G--TVYLIRPDQHVAARWRT-----PDAAAVRAALA  542 (547)
T ss_pred             -----cCcccccCcccHHHHHhCCCC------C--eEEEECCCceEEEEecC-----CCHHHHHHHHH
Confidence                 122345788999999999874      3  68999999999988654     23455555443

>TIGR03765 ICE_PFL_4695 integrating conjugative element protein, PFL_4695 family

Probab=81.64  E-value=14  Score=25.87  Aligned_cols=68  Identities=13%  Similarity=0.228  Sum_probs=48.8

Q ss_pred             HHHHHHHHHHHHHHHcCcEEEEEeCCCHHHHHHHHHHcCCCeEEEEcCChhHHHHhCCCccCCCCCCccEEEEEcCCC
Q 028030          112 KQACAFRDSYEKFKKAGAEVIGISGDDSSSHKAFAKKYRLPYTLLSDEGNKVRKEWGVPADFFGSLPGRQTYILDKNG  189 (215)
Q Consensus       112 ~~~~~l~~l~~~~~~~~v~vv~vs~d~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~g~~~~~~g~~p~~~~~lid~~G  189 (215)
                      ....=|++.++++++.+..=+.|++++.+.++...+- -...++.-....++++.+|+..     +|    ++|..+|
T Consensus        35 ~S~~WL~~~~~~L~~l~AvGlVVnV~t~~~l~~Lr~l-apgl~l~P~sgddLa~rL~l~h-----YP----vLit~tg  102 (105)
T TIGR03765        35 ASRQWLQQNAAALKSLGAVGLVVNVETAAALQRLRAL-APGLPLLPVSGDDLAERLGLRH-----YP----VLITATG  102 (105)
T ss_pred             HHHHHHHHHHHHHHHCCCeEEEEecCCHHHHHHHHHH-cCCCcccCCCHHHHHHHhCCCc-----cc----EEEecCc
Confidence            3455667777888877777777899998876655443 3445566667789999999987     77    5666666

This model describes a protein family exemplified by PFL_4695 of Pseudomonas fluorescens Pf-5. Full-length proteins in this family show some architectural variety, but this model represents a conserved domain. Most or all member proteins belong to laterally transferred chromosomal islands called integrative conjugative elements, or ICE.

>COG4545 Glutaredoxin-related protein [Posttranslational modification, protein turnover, chaperones]

Probab=81.15  E-value=11  Score=24.65  Aligned_cols=42  Identities=12%  Similarity=0.128  Sum_probs=26.4

Q ss_pred             EEEEcCCCChhhHHHHHHHHHHHHHHHHcCcEEEEEeC-CCHHHHHHHHHH
Q 028030           99 VYFYPADETPGCTKQACAFRDSYEKFKKAGAEVIGISG-DDSSSHKAFAKK  148 (215)
Q Consensus        99 l~f~~a~~C~~C~~~~~~l~~l~~~~~~~~v~vv~vs~-d~~~~~~~~~~~  148 (215)
                      +-|+ +.-||.|......|+++       ++..=.|.+ .+-...++|+.-
T Consensus         5 ~lfg-sn~Cpdca~a~eyl~rl-------~v~yd~VeIt~Sm~NlKrFl~l   47 (85)
T COG4545           5 KLFG-SNLCPDCAPAVEYLERL-------NVDYDFVEITESMANLKRFLHL   47 (85)
T ss_pred             eeec-cccCcchHHHHHHHHHc-------CCCceeeehhhhhhhHHHHHhh
Confidence            4466 89999999887777665       344334432 344566666653

>PF01323 DSBA: DSBA-like thioredoxin domain; InterPro: IPR001853 DSBA is a sub-family of the Thioredoxin family []

Probab=80.41  E-value=6.9  Score=29.76  Aligned_cols=40  Identities=13%  Similarity=0.172  Sum_probs=29.1

Q ss_pred             EEEEEEcCCCChhhHHHHHHHHHHHHHHHHcCcEEEEEeCC
Q 028030           97 VVVYFYPADETPGCTKQACAFRDSYEKFKKAGAEVIGISGD  137 (215)
Q Consensus        97 ~ll~f~~a~~C~~C~~~~~~l~~l~~~~~~~~v~vv~vs~d  137 (215)
                      +|.+|+ ..-||.|-...+.|.++.+++++-.+++..+...
T Consensus         1 ~i~~~~-D~~Cp~cy~~~~~l~~l~~~~~~~~i~~~p~~l~   40 (193)
T PF01323_consen    1 TIEFFF-DFICPWCYLASPRLRKLRAEYPDVEIEWRPFPLR   40 (193)
T ss_dssp             EEEEEE-BTTBHHHHHHHHHHHHHHHHHTTCEEEEEEESSS
T ss_pred             CEEEEE-eCCCHHHHHHHHHHHHHHHHhcCCcEEEeccccc
Confidence            355566 8889999999999999999994333444455543

The efficient and correct folding of bacterial disulphide bonded proteins in vivo is dependent upon a class of periplasmic oxidoreductase proteins called DsbA, after the Escherichia coli enzyme. The bacterial protein-folding factor DsbA is the most oxidizing of the thioredoxin family. DsbA catalyses disulphide-bond formation during the folding of secreted proteins. The extremely oxidizing nature of DsbA has been proposed to result from either domain motion or stabilising active-site interactions in the reduced form. DsbA's highly oxidizing nature is a result of hydrogen bond, electrostatic and helix-dipole interactions that favour the thiolate over the disulphide at the active site []. In the pathogenic bacterium Vibrio cholerae, the DsbA homologue (TcpG) is responsible for the folding, maturation and secretion of virulence factors. While the overall architecture of TcpG and DsbA is similar and the surface features are retained in TcpG, there are significant differences. For example, the kinked active site helix results from a three-residue loop in DsbA, but is caused by a proline in TcpG (making TcpG more similar to thioredoxin in this respect). Furthermore, the proposed peptide binding groove of TcpG is substantially shortened compared with that of DsbA due to a six-residue deletion. Also, the hydrophobic pocket of TcpG is more shallow and the acidic patch is much less extensive than that of E. coli DsbA [].; GO: 0015035 protein disulfide oxidoreductase activity; PDB: 3GL5_A 3DKS_D 3RPP_C 3RPN_B 1YZX_A 3L9V_C 2IMD_A 2IME_A 2IMF_A 2B3S_B ....

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Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	215
3drn_A	161	The Crystal Structure Of Bcp1 From Sulfolobus Sulfa		1e-30
2ywn_A	157	Crystal Structure Of Peroxiredoxin-Like Protein Fro		1e-21
3hjp_A	164	The Crystal Structure Of Bcp4 From Sulfolobus Solfa		4e-17
4gqc_A	164	Crystal Structure Of Aeropyrum Pernix Peroxiredoxin		2e-15
2cx3_A	164	Crystal Structure Of A Bacterioferritin Comigratory		3e-15
1qq2_A	199	Crystal Structure Of A Mammalian 2-Cys Peroxiredoxi		2e-14
2rii_A	199	Crystal Structure Of Human Peroxiredoxin I In Compl		2e-14
1zye_A	220	Crystal Strucutre Analysis Of Bovine Mitochondrial		4e-14
2pn8_A	211	Crystal Structure Of Human Peroxiredoxin 4 (Thiored		2e-13
1qmv_A	197	Thioredoxin Peroxidase B From Red Blood Cells Lengt		4e-13
3tkp_A	246	Crystal Structure Of Full-Length Human Peroxiredoxi		5e-13
3ztl_A	222	Crystal Structure Of Decameric Form Of Peroxiredoxi		5e-13
3tjk_A	254	Crystal Structure Of Human Peroxiredoxin Iv C245a M		5e-13
3tjf_A	254	Crystal Structure Of Human Peroxiredoxin Iv C51a Mu		5e-13
3tjb_A	254	Crystal Structure Of Wild-Type Human Peroxiredoxin		5e-13
3zvj_A	219	Crystal Structure Of High Molecular Weight (Hmw) Fo		6e-13
3zvj_D	219	Crystal Structure Of High Molecular Weight (Hmw) Fo		6e-13
3tkr_A	246	Crystal Structure Of Full-Length Human Peroxiredoxi		8e-13
2z9s_A	199	Crystal Structure Analysis Of Rat Hbp23PEROXIREDOXI		9e-13
2a4v_A	159	Crystal Structure Of A Truncated Mutant Of Yeast Nu		1e-12
3qpm_A	240	Crystal Structure Of Peroxiredoxin Prx4 From Pseudo		2e-12
3hy2_A	206	Crystal Structure Of Sulfiredoxin In Complex With P		3e-12
2h01_A	192	Py00414- Plasmodium Yoelii Thioredoxin Peroxidase I		4e-12
3tue_A	219	The Structure Of Tryparedoxin Peroxidase I From Lei		4e-12
3tks_A	246	Crystal Structure Of Full-Length Human Peroxiredoxi		1e-11
3tjj_A	254	Crystal Structure Of Human Peroxiredoxin Iv C245a M		1e-11
2h66_A	213	The Crystal Structure Of Plasmodium Vivax 2-Cys Per		2e-11
3gkk_A	163	Insights Into The Alkyl Peroxide Reduction Activity		2e-11
3a2v_A	249	Peroxiredoxin (C207s) From Aeropyrum Pernix K1 Comp		4e-11
2e2g_A	250	Crystal Structure Of Archaeal Peroxiredoxin, Thiore		4e-11
3a5w_A	249	Peroxiredoxin (Wild Type) From Aeropyrum Pernix K1		5e-11
1uul_A	202	Tryparedoxin Peroxidase (Txnpx) From Trypanosoma Cr		7e-11
1x0r_A	249	Thioredoxin Peroxidase From Aeropyrum Pernix K1 Len		2e-10
3gkn_A	163	Insights Into The Alkyl Peroxide Reduction Activity		3e-10
3gkm_A	163	Insights Into The Alkyl Peroxide Reduction Activity		4e-10
1e2y_A	188	Tryparedoxin Peroxidase From Crithidia Fasciculata		6e-10
4eo3_A	322	Peroxiredoxin Nitroreductase Fusion Enzyme Length =		9e-10
3a2w_A	249	Peroxiredoxin (C50s) From Aeropytum Pernix K1 (Pero		1e-09
2e2m_A	250	Crystal Structure Of Archaeal Peroxiredoxin, Thiore		1e-09
2zct_A	249	Oxidation Of Archaeal Peroxiredoxin Involves A Hype		1e-09
2c0d_A	221	Structure Of The Mitochondrial 2-Cys Peroxiredoxin		2e-09
2cv4_A	250	Crystal Structure Of An Archaeal Peroxiredoxin From		5e-09
3sbc_A	216	Crystal Structure Of Saccharomyces Cerevisiae Tsa1c		9e-09
1we0_A	187	Crystal Structure Of Peroxiredoxin (Ahpc) From Amph		1e-08
1xxu_A	153	Crystal Structure Of Ahpe From Mycrobacterium Tuber		1e-08
3ixr_A	179	Crystal Structure Of Xylella Fastidiosa Prxq C47s M		3e-08
2bmx_A	195	Mycobacterium Tuberculosis Ahpc Length = 195		5e-08
3c71_A	143	Struture Of A Resa Variant With A Dsba-Like Active		2e-07
1xvw_A	160	Crystal Structure Of Ahpe From Mycobacterium Tuberc		2e-07
2h1b_A	143	Resa E80q Length = 143		2e-07
2h1a_A	143	Resa C74a Variant Length = 143		3e-07
3emp_A	186	Crystal Structure Of The S-Acetanilide Modified For		5e-07
1yep_A	186	Structural And Biochemical Analysis Of The Link Bet		5e-07
1st9_A	143	Crystal Structure Of A Soluble Domain Of Resa In Th		6e-07
1yex_A	186	Structural And Biochemical Analysis Of The Link Bet		9e-07
1yf1_A	186	Structural And Biochemical Analysis Of The Link Bet		1e-06
1yf0_A	186	Structural And Biochemical Analysis Of The Link Bet		1e-06
2f9s_A	151	2nd Crystal Structure Of A Soluble Domain Of Resa I		2e-06
2h1g_A	143	Resa C74aC77A Length = 143		5e-06
3hdc_A	158	The Crystal Structure Of Thioredoxin Protein From G		6e-06
2h19_A	143	Crystal Structure Of Resa Cys77ala Variant Length =		9e-06
3c73_A	140	Structure Of Cehc Variant Resa Length = 140		1e-05
1n8j_A	186	Crystal Structure Of Ahpc With Active Site Cysteine		1e-05
1zof_A	198	Crystal Structure Of Alkyl Hydroperoxide-Reductase		2e-05
2l5o_A	153	Solution Structure Of A Putative Thioredoxin From N		5e-05
2lrn_A	152	Solution Structure Of A Thiol:disulfide Interchange		2e-04
2vl9_A	173	Oxidized Form Of Human Peroxiredoxin 5 Length = 173		7e-04
2vl2_A	172	Oxidized And Reduced Forms Of Human Peroxiredoxin 5		7e-04
3mng_A	173	Wild Type Human Prxv With Dtt Bound As A Competitiv		8e-04
1oc3_A	172	Human Peroxiredoxin 5 Length = 172		9e-04

>pdb|3DRN|A Chain A, The Crystal Structure Of Bcp1 From Sulfolobus Sulfataricus Length = 161

Iteration: 1
 Score =  129 bits (323), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 64/147 (43%), Positives = 93/147 (63%), Gaps = 4/147 (2%)
Query: 68  VSKGQAPPSFTLKDQEGRNVSLSKFKGKP-VVVYFYPADETPGCTKQACAFRDSYEKFKK 126
           V  G   P F      G  +SLS + GK  +V+YFYP D+TPG T++A AFRD+++  K 
Sbjct: 2   VKVGDKAPLFEGIADNGEKISLSDYIGKHNIVLYFYPKDDTPGSTREASAFRDNWDLLKD 61
Query: 127 AGAEVIGISGDDSSSHKAFAKKYRLPYTLLSDEGNKVRKEWGVPADFFGSLPGRQTYILD 186
               VIG+S DD +SHK F +KY+LP+ L+SD   K+R+ +G    F   LP R T+++D
Sbjct: 62  YDVVVIGVSSDDINSHKRFKEKYKLPFILVSDPDKKIRELYGAKG-FI--LPARITFVID 118
Query: 187 KNGVVQLIYNNQFQPEKHIDETLKFLQ 213
           K G+++ IYN+Q  P  H++E LK L+
Sbjct: 119 KKGIIRHIYNSQMNPANHVNEALKALK 145

>pdb|2YWN|A Chain A, Crystal Structure Of Peroxiredoxin-Like Protein From Sulfolobus Tokodaii Length = 157

Iteration: 1
 Score = 99.8 bits (247), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 57/130 (43%), Positives = 77/130 (59%), Gaps = 6/130 (4%)
Query: 68  VSKGQAPPSFTLKDQEGRNVSLSKFKGKPVVVYFYPADETPGCTKQACAFRDSYEKFKKA 127
           V  G+  P F L D E + V LS  KGK VV+ FYPA  T  CTK+ C FRDS  KF + 
Sbjct: 4   VEIGELAPDFELPDTELKKVKLSALKGKVVVLAFYPAAFTQVCTKEMCTFRDSMAKFNQV 63
Query: 128 GAEVIGISGDDSSSHKAFAKKYRLPYTLLSDEGNKVRKEWGVPADFFGSLPG-----RQT 182
            A V+GIS D   S+KAF +  +L +T+LSD   +V K++ V  + F +LPG     R  
Sbjct: 64  NAVVLGISVDPPFSNKAFKEHNKLNFTILSDYNREVVKKYNVAWE-FPALPGYVLAKRAV 122
Query: 183 YILDKNGVVQ 192
           +++DK G V+
Sbjct: 123 FVIDKEGKVR 132

>pdb|3HJP|A Chain A, The Crystal Structure Of Bcp4 From Sulfolobus Solfataricus Length = 164

Iteration: 1
 Score = 84.3 bits (207), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 52/134 (38%), Positives = 74/134 (55%), Gaps = 13/134 (9%)
Query: 68  VSKGQAPPSFTLKDQEGRNVSL-SKFKGKPVVVYFYPADETPGCTKQACAFRDSYEKFKK 126
           V  G+  P   L D + + V + S FKGK VV+ FYPA  T   TK+   FRDS  KF +
Sbjct: 2   VEIGEKAPEIELVDTDLKKVKIPSDFKGKVVVLAFYPAAFTSVSTKEMSTFRDSMAKFNE 61
Query: 127 AGAEVIGISGDDSSSHKAFAKKYRLPYTLLSDEGNKVRKEWGVPADFFGSLP-------- 178
             A VIGIS D   S+KAF ++ ++ +T++SD   +  K +GV     G LP        
Sbjct: 62  VNAVVIGISVDPPFSNKAFKEQNKINFTIVSDFNREAVKAYGVA----GELPILKGYVLA 117
Query: 179 GRQTYILDKNGVVQ 192
            R  +++DKNG+V+
Sbjct: 118 KRSVFVIDKNGIVR 131

>pdb|4GQC|A Chain A, Crystal Structure Of Aeropyrum Pernix Peroxiredoxin Q Enzyme In Fully- Folded And Locally-unfolded Conformations Length = 164

Iteration: 1
 Score = 79.0 bits (193), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 47/129 (36%), Positives = 69/129 (53%), Gaps = 5/129 (3%)
Query: 68  VSKGQAPPSFTLKDQEGRNVSLSKF--KGKPVVVYFYPADETPGCTKQACAFRDSYEKFK 125
           V  G+  P FTL +Q+   V+L +   +G+P V+ F+PA  +P CTK+ C FRD   + +
Sbjct: 5   VELGEKAPDFTLPNQDFEPVNLYEVLKRGRPAVLIFFPAAFSPVCTKELCTFRDKMAQLE 64
Query: 126 KAGAEVIGISGDDSSSHKAFAKKYRLPYTLLSDEGNKVRKEWGVPADFFGSL---PGRQT 182
           KA AEV+ IS D     K F  + RL + LLSD   +V K + V  +    L     R  
Sbjct: 65  KANAEVLAISVDSPWCLKKFKDENRLAFNLLSDYNREVIKLYNVYHEDLKGLKMVAKRAV 124
Query: 183 YILDKNGVV 191
           +I+  +G V
Sbjct: 125 FIVKPDGTV 133

>pdb|2CX3|A Chain A, Crystal Structure Of A Bacterioferritin Comigratory Protein Peroxiredoxin From The Aeropyrum Pernix K1 (Form-1 Crystal) Length = 164

Iteration: 1
 Score = 78.2 bits (191), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 48/129 (37%), Positives = 70/129 (54%), Gaps = 5/129 (3%)
Query: 68  VSKGQAPPSFTLKDQEGRNVSLSKF--KGKPVVVYFYPADETPGCTKQACAFRDSYEKFK 125
           V  G+  P FTL +Q+   V+L +   +G+P V+ F+PA  +P CTK+ C FRD   + +
Sbjct: 5   VELGEKAPDFTLPNQDFEPVNLYEVLKRGRPAVLIFFPAAFSPVCTKELCTFRDKXAQLE 64
Query: 126 KAGAEVIGISGDDSSSHKAFAKKYRLPYTLLSDEGNKVRKEWGV-PADFFG--SLPGRQT 182
           KA AEV+ IS D     K F  + RL + LLSD   +V K + V   D  G   +  R  
Sbjct: 65  KANAEVLAISVDSPWCLKKFKDENRLAFNLLSDYNREVIKLYNVYHEDLKGLKXVAKRAV 124
Query: 183 YILDKNGVV 191
           +I+  +G V
Sbjct: 125 FIVKPDGTV 133

>pdb|1QQ2|A Chain A, Crystal Structure Of A Mammalian 2-Cys Peroxiredoxin, Hbp23. Length = 199

Iteration: 1
 Score = 75.9 bits (185), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 52/162 (32%), Positives = 81/162 (50%), Gaps = 14/162 (8%)
Query: 65  SAKVSKGQAPPSF----TLKDQEGRNVSLSKFKGKPVVVYFYPADETPGCTKQACAFRDS 120
           S     G   PSF     + D + +++SLS +KGK VV +FYP D T  C  +  AF D 
Sbjct: 3   SGNAKIGHPAPSFKATAVMPDGQFKDISLSDYKGKYVVFFFYPLDFTFVCPTEIIAFSDR 62
Query: 121 YEKFKKAGAEVIGISGDDSSSHKAFAKKYR-------LPYTLLSDEGNKVRKEWGV-PAD 172
            E+FKK   +VIG S D   SH A+    +       +   L+SD    + +++GV  AD
Sbjct: 63  AEEFKKLNCQVIGASVDSHFSHLAWINTPKKQGGLGPMNIPLVSDPKRTIAQDYGVLKAD 122
Query: 173 FFGSLPGRQTYILDKNGVVQLIYNNQFQPEKHIDETLKFLQS 214
               +  R  +I+D  G+++ I  N     + +DE L+ +Q+
Sbjct: 123 --EGISFRGLFIIDDKGILRQITINDLPVGRSVDEILRLVQA 162

>pdb|2RII|A Chain A, Crystal Structure Of Human Peroxiredoxin I In Complex With Sulfiredoxin Length = 199

Iteration: 1
 Score = 75.5 bits (184), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 51/162 (31%), Positives = 82/162 (50%), Gaps = 14/162 (8%)
Query: 65  SAKVSKGQAPPSF----TLKDQEGRNVSLSKFKGKPVVVYFYPADETPGCTKQACAFRDS 120
           S     G   P+F     + D + +++SLS +KGK VV +FYP D T  C  +  AF D 
Sbjct: 3   SGNAKIGHPAPNFKATAVMPDGQFKDISLSDYKGKYVVFFFYPLDFTFVCPTEIIAFSDR 62
Query: 121 YEKFKKAGAEVIGISGDDSSSHKAFAKKYR-------LPYTLLSDEGNKVRKEWGV-PAD 172
            E+FKK  ++VIG S D    H A+    +       +   L+SD    + +++GV  AD
Sbjct: 63  AEEFKKLNSQVIGASVDSHFEHLAWVNTPKKQGGLGPMNIPLVSDPKRTIAQDYGVLKAD 122
Query: 173 FFGSLPGRQTYILDKNGVVQLIYNNQFQPEKHIDETLKFLQS 214
               +  R  +I+D  G+++ I  N     + +DETL+ +Q+
Sbjct: 123 --EGISFRGLFIIDDKGILRQITVNDLPVGRSVDETLRLVQA 162

>pdb|1ZYE|A Chain A, Crystal Strucutre Analysis Of Bovine Mitochondrial Peroxiredoxin Iii Length = 220

Iteration: 1
 Score = 74.3 bits (181), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 44/139 (31%), Positives = 73/139 (52%), Gaps = 8/139 (5%)
Query: 83  EGRNVSLSKFKGKPVVVYFYPADETPGCTKQACAFRDSYEKFKKAGAEVIGISGDDSSSH 142
           E + +SL  FKGK +V++FYP D T  C  +  AF D   +F     EV+ +S D   SH
Sbjct: 45  EFKEISLDDFKGKYLVLFFYPLDFTFVCPTEIIAFSDKASEFHDVNCEVVAVSVDSHFSH 104
Query: 143 KAFAKKYR-------LPYTLLSDEGNKVRKEWGVPADFFGSLPGRQTYILDKNGVVQLIY 195
            A+    R       +   LLSD   ++ +++GV  +  G L  R  +I+D NGV++ + 
Sbjct: 105 LAWINTPRKNGGLGHMNIALLSDLTKQISRDYGVLLEGPG-LALRGLFIIDPNGVIKHLS 163
Query: 196 NNQFQPEKHIDETLKFLQS 214
            N     + ++ETL+ +++
Sbjct: 164 VNDLPVGRSVEETLRLVKA 182

>pdb|2PN8|A Chain A, Crystal Structure Of Human Peroxiredoxin 4 (Thioredoxin Peroxidase) Length = 211

Iteration: 1
 Score = 72.4 bits (176), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 50/175 (28%), Positives = 87/175 (49%), Gaps = 17/175 (9%)
Query: 49  SSNLPIPSSTSFKTSISAKVSKGQAPPSFTLKDQEGRNVSLSKFKGKPVVVYFYPADETP 108
           SS + + +   +  S+ A   +G A     + D E + + L+ ++GK +V +FYP D T 
Sbjct: 8   SSGVDLGTENLYFQSMPAPYWEGTA-----VIDGEFKELKLTDYRGKYLVFFFYPLDFTF 62
Query: 109 GCTKQACAFRDSYEKFKKAGAEVIGISGDDSSSHKAFAKK---------YRLPYTLLSDE 159
            C  +  AF D  E+F+    EV+  S D   +H A+             R+P  LLSD 
Sbjct: 63  VCPTEIIAFGDRLEEFRSINTEVVACSVDSQFTHLAWINTPRRQGGLGPIRIP--LLSDL 120
Query: 160 GNKVRKEWGVPADFFGSLPGRQTYILDKNGVVQLIYNNQFQPEKHIDETLKFLQS 214
            +++ K++GV  +  G    R  +I+D  G+++ I  N     + +DETL+ +Q+
Sbjct: 121 THQISKDYGVYLEDSGHTL-RGLFIIDDKGILRQITLNDLPVGRSVDETLRLVQA 174

>pdb|1QMV|A Chain A, Thioredoxin Peroxidase B From Red Blood Cells Length = 197

Iteration: 1
 Score = 71.2 bits (173), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 50/160 (31%), Positives = 79/160 (49%), Gaps = 11/160 (6%)
Query: 65  SAKVSKGQAPPSF---TLKDQEGRNVSLSKFKGKPVVVYFYPADETPGCTKQACAFRDSY 121
           S     G+  P F    + D   + V LS +KGK VV++FYP D T     +  AF +  
Sbjct: 2   SGNARIGKPAPDFKATAVVDGAFKEVKLSDYKGKYVVLFFYPLDFTFVXPTEIIAFSNRA 61
Query: 122 EKFKKAGAEVIGISGDDSSSHKAFAKKYR-------LPYTLLSDEGNKVRKEWGVPADFF 174
           E F+K G EV+G+S D   +H A+    R       L   LL+D   ++ +++GV     
Sbjct: 62  EDFRKLGCEVLGVSVDSQFTHLAWINTPRKEGGLGPLNIPLLADVTRRLSEDYGVLKTDE 121
Query: 175 GSLPGRQTYILDKNGVVQLIYNNQFQPEKHIDETLKFLQS 214
           G +  R  +I+D  GV++ I  N     + +DE L+ +Q+
Sbjct: 122 G-IAYRGLFIIDGKGVLRQITVNDLPVGRSVDEALRLVQA 160

>pdb|3TKP|A Chain A, Crystal Structure Of Full-Length Human Peroxiredoxin 4 In The Reduced Form Length = 246

Iteration: 1
 Score = 70.9 bits (172), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 44/143 (30%), Positives = 74/143 (51%), Gaps = 12/143 (8%)
Query: 81  DQEGRNVSLSKFKGKPVVVYFYPADETPGCTKQACAFRDSYEKFKKAGAEVIGISGDDSS 140
           D E + + L+ ++GK +V +FYP D T  C  +  AF D  E+F+    EV+  S D   
Sbjct: 70  DGEFKELKLTDYRGKYLVFFFYPLDFTFVCPTEIIAFGDRLEEFRSINTEVVACSVDSQF 129
Query: 141 SHKAFAKK---------YRLPYTLLSDEGNKVRKEWGVPADFFGSLPGRQTYILDKNGVV 191
           +H A+             R+P  LLSD  +++ K++GV  +  G    R  +I+D  G++
Sbjct: 130 THLAWINTPRRQGGLGPIRIP--LLSDLTHQISKDYGVYLEDSGHTL-RGLFIIDDKGIL 186
Query: 192 QLIYNNQFQPEKHIDETLKFLQS 214
           + I  N     + +DETL+ +Q+
Sbjct: 187 RQITLNDLPVGRSVDETLRLVQA 209

>pdb|3ZTL|A Chain A, Crystal Structure Of Decameric Form Of Peroxiredoxin I From Schistosoma Mansoni Length = 222

Iteration: 1
 Score = 70.9 bits (172), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 49/152 (32%), Positives = 77/152 (50%), Gaps = 13/152 (8%)
Query: 70  KGQAPPSFTLKDQEGRNVSLSKFKGKPVVVYFYPADETPGCTKQACAFRDSYEKFKKAGA 129
           KGQA     + + E + + L  ++GK VV++FYPAD T  C  +  AF D  E+F     
Sbjct: 50  KGQA-----VINGEFKEICLKDYRGKYVVLFFYPADFTFVCPTEIIAFSDQVEEFNSRNC 104
Query: 130 EVIGISGDDSSSHKAFAKKYR-------LPYTLLSDEGNKVRKEWGVPADFFGSLPGRQT 182
           +VI  S D   SH A+    R       +   LL+D   ++ K +GV  +  G+   R  
Sbjct: 105 QVIACSTDSQYSHLAWDNLDRKSGGLGHMKIPLLADRKQEISKAYGVFDEEDGN-AFRGL 163
Query: 183 YILDKNGVVQLIYNNQFQPEKHIDETLKFLQS 214
           +I+D NG+++ I  N     + +DETL+ L +
Sbjct: 164 FIIDPNGILRQITINDKPVGRSVDETLRLLDA 195

>pdb|3TJK|A Chain A, Crystal Structure Of Human Peroxiredoxin Iv C245a Mutant In Reduced Form Length = 254

Iteration: 1
 Score = 70.9 bits (172), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 44/143 (30%), Positives = 74/143 (51%), Gaps = 12/143 (8%)
Query: 81  DQEGRNVSLSKFKGKPVVVYFYPADETPGCTKQACAFRDSYEKFKKAGAEVIGISGDDSS 140
           D E + + L+ ++GK +V +FYP D T  C  +  AF D  E+F+    EV+  S D   
Sbjct: 78  DGEFKELKLTDYRGKYLVFFFYPLDFTFVCPTEIIAFGDRLEEFRSINTEVVACSVDSQF 137
Query: 141 SHKAFAKK---------YRLPYTLLSDEGNKVRKEWGVPADFFGSLPGRQTYILDKNGVV 191
           +H A+             R+P  LLSD  +++ K++GV  +  G    R  +I+D  G++
Sbjct: 138 THLAWINTPRRQGGLGPIRIP--LLSDLTHQISKDYGVYLEDSGHTL-RGLFIIDDKGIL 194
Query: 192 QLIYNNQFQPEKHIDETLKFLQS 214
           + I  N     + +DETL+ +Q+
Sbjct: 195 RQITLNDLPVGRSVDETLRLVQA 217

>pdb|3TJF|A Chain A, Crystal Structure Of Human Peroxiredoxin Iv C51a Mutant In Reduced Form Length = 254

Iteration: 1
 Score = 70.9 bits (172), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 44/143 (30%), Positives = 74/143 (51%), Gaps = 12/143 (8%)
Query: 81  DQEGRNVSLSKFKGKPVVVYFYPADETPGCTKQACAFRDSYEKFKKAGAEVIGISGDDSS 140
           D E + + L+ ++GK +V +FYP D T  C  +  AF D  E+F+    EV+  S D   
Sbjct: 78  DGEFKELKLTDYRGKYLVFFFYPLDFTFVCPTEIIAFGDRLEEFRSINTEVVACSVDSQF 137
Query: 141 SHKAFAKK---------YRLPYTLLSDEGNKVRKEWGVPADFFGSLPGRQTYILDKNGVV 191
           +H A+             R+P  LLSD  +++ K++GV  +  G    R  +I+D  G++
Sbjct: 138 THLAWINTPRRQGGLGPIRIP--LLSDLTHQISKDYGVYLEDSGHTL-RGLFIIDDKGIL 194
Query: 192 QLIYNNQFQPEKHIDETLKFLQS 214
           + I  N     + +DETL+ +Q+
Sbjct: 195 RQITLNDLPVGRSVDETLRLVQA 217

>pdb|3TJB|A Chain A, Crystal Structure Of Wild-Type Human Peroxiredoxin Iv Length = 254

Iteration: 1
 Score = 70.9 bits (172), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 44/143 (30%), Positives = 74/143 (51%), Gaps = 12/143 (8%)
Query: 81  DQEGRNVSLSKFKGKPVVVYFYPADETPGCTKQACAFRDSYEKFKKAGAEVIGISGDDSS 140
           D E + + L+ ++GK +V +FYP D T  C  +  AF D  E+F+    EV+  S D   
Sbjct: 78  DGEFKELKLTDYRGKYLVFFFYPLDFTFVCPTEIIAFGDRLEEFRSINTEVVACSVDSQF 137
Query: 141 SHKAFAKK---------YRLPYTLLSDEGNKVRKEWGVPADFFGSLPGRQTYILDKNGVV 191
           +H A+             R+P  LLSD  +++ K++GV  +  G    R  +I+D  G++
Sbjct: 138 THLAWINTPRRQGGLGPIRIP--LLSDLTHQISKDYGVYLEDSGHTL-RGLFIIDDKGIL 194
Query: 192 QLIYNNQFQPEKHIDETLKFLQS 214
           + I  N     + +DETL+ +Q+
Sbjct: 195 RQITLNDLPVGRSVDETLRLVQA 217

>pdb|3ZVJ|A Chain A, Crystal Structure Of High Molecular Weight (Hmw) Form Of Peroxiredoxin I From Schistosoma Mansoni Length = 219

Iteration: 1
 Score = 70.9 bits (172), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 49/152 (32%), Positives = 77/152 (50%), Gaps = 13/152 (8%)
Query: 70  KGQAPPSFTLKDQEGRNVSLSKFKGKPVVVYFYPADETPGCTKQACAFRDSYEKFKKAGA 129
           KGQA     + + E + + L  ++GK VV++FYPAD T  C  +  AF D  E+F     
Sbjct: 47  KGQA-----VINGEFKEICLKDYRGKYVVLFFYPADFTFVCPTEIIAFSDQVEEFNSRNC 101
Query: 130 EVIGISGDDSSSHKAFAKKYR-------LPYTLLSDEGNKVRKEWGVPADFFGSLPGRQT 182
           +VI  S D   SH A+    R       +   LL+D   ++ K +GV  +  G+   R  
Sbjct: 102 QVIACSTDSQYSHLAWDNLDRKSGGLGHMKIPLLADRKQEISKAYGVFDEEDGN-AFRGL 160
Query: 183 YILDKNGVVQLIYNNQFQPEKHIDETLKFLQS 214
           +I+D NG+++ I  N     + +DETL+ L +
Sbjct: 161 FIIDPNGILRQITINDKPVGRSVDETLRLLDA 192

>pdb|3ZVJ|D Chain D, Crystal Structure Of High Molecular Weight (Hmw) Form Of Peroxiredoxin I From Schistosoma Mansoni Length = 219

Iteration: 1
 Score = 70.5 bits (171), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 49/152 (32%), Positives = 77/152 (50%), Gaps = 13/152 (8%)
Query: 70  KGQAPPSFTLKDQEGRNVSLSKFKGKPVVVYFYPADETPGCTKQACAFRDSYEKFKKAGA 129
           KGQA     + + E + + L  ++GK VV++FYPAD T  C  +  AF D  E+F     
Sbjct: 47  KGQA-----VINGEFKEICLKDYRGKYVVLFFYPADFTFVCPTEIIAFSDQVEEFNSRNC 101
Query: 130 EVIGISGDDSSSHKAFAKKYR-------LPYTLLSDEGNKVRKEWGVPADFFGSLPGRQT 182
           +VI  S D   SH A+    R       +   LL+D   ++ K +GV  +  G+   R  
Sbjct: 102 QVIACSTDSQYSHLAWDNLDRKSGGLGHMKIPLLADRKQEISKAYGVFDEEDGN-AFRGL 160
Query: 183 YILDKNGVVQLIYNNQFQPEKHIDETLKFLQS 214
           +I+D NG+++ I  N     + +DETL+ L +
Sbjct: 161 FIIDPNGILRQITLNDKPVGRSVDETLRLLDA 192

>pdb|3TKR|A Chain A, Crystal Structure Of Full-Length Human Peroxiredoxin 4 With T118e Mutation Length = 246

Iteration: 1
 Score = 70.1 bits (170), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 44/143 (30%), Positives = 73/143 (51%), Gaps = 12/143 (8%)
Query: 81  DQEGRNVSLSKFKGKPVVVYFYPADETPGCTKQACAFRDSYEKFKKAGAEVIGISGDDSS 140
           D E + + L+ ++GK +V +FYP D T  C  +  AF D  E+F+    EV+  S D   
Sbjct: 70  DGEFKELKLTDYRGKYLVFFFYPLDFTFVCPTEIIAFGDRLEEFRSINTEVVACSVDSQF 129
Query: 141 SHKAFAKK---------YRLPYTLLSDEGNKVRKEWGVPADFFGSLPGRQTYILDKNGVV 191
            H A+             R+P  LLSD  +++ K++GV  +  G    R  +I+D  G++
Sbjct: 130 EHLAWINTPRRQGGLGPIRIP--LLSDLTHQISKDYGVYLEDSGHTL-RGLFIIDDKGIL 186
Query: 192 QLIYNNQFQPEKHIDETLKFLQS 214
           + I  N     + +DETL+ +Q+
Sbjct: 187 RQITLNDLPVGRSVDETLRLVQA 209

>pdb|2Z9S|A Chain A, Crystal Structure Analysis Of Rat Hbp23PEROXIREDOXIN I, Cys52ser Mutant Length = 199

Iteration: 1
 Score = 70.1 bits (170), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 50/162 (30%), Positives = 79/162 (48%), Gaps = 14/162 (8%)
Query: 65  SAKVSKGQAPPSF----TLKDQEGRNVSLSKFKGKPVVVYFYPADETPGCTKQACAFRDS 120
           S     G   PSF     + D + +++SLS +KGK VV +FYP D T     +  AF D 
Sbjct: 3   SGNAKIGHPAPSFKATAVMPDGQFKDISLSDYKGKYVVFFFYPLDFTFVSPTEIIAFSDR 62
Query: 121 YEKFKKAGAEVIGISGDDSSSHKAFAKKYR-------LPYTLLSDEGNKVRKEWGV-PAD 172
            E+FKK   +VIG S D    H A+    +       +   L+SD    + +++GV  AD
Sbjct: 63  AEEFKKLNCQVIGASVDSHFCHLAWINTPKKQGGLGPMNIPLVSDPKRTIAQDYGVLKAD 122
Query: 173 FFGSLPGRQTYILDKNGVVQLIYNNQFQPEKHIDETLKFLQS 214
               +  R  +I+D  G+++ I  N     + +DE L+ +Q+
Sbjct: 123 --EGISFRGLFIIDDKGILRQITINDLPVGRSVDEILRLVQA 162

>pdb|2A4V|A Chain A, Crystal Structure Of A Truncated Mutant Of Yeast Nuclear Thiol Peroxidase Length = 159

Iteration: 1
 Score = 69.7 bits (169), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 39/90 (43%), Positives = 54/90 (60%), Gaps = 3/90 (3%)
Query: 71  GQAPPSFTLKDQEGRNVSLSKF-KGKPVVVYF-YPADETPGCTKQACAFRDSYEKFKKAG 128
           G   P  +L +++  ++SL K  +   VVV+F YP   TPG T+QA  FRD+Y++ K+  
Sbjct: 10  GDPIPDLSLLNEDNDSISLKKITENNRVVVFFVYPRASTPGSTRQASGFRDNYQELKEYA 69
Query: 129 AEVIGISGDDSSSHKAFAKKYRLPYTLLSD 158
           A V G+S D  +S K F  K  LPY LLSD
Sbjct: 70  A-VFGLSADSVTSQKKFQSKQNLPYHLLSD 98

>pdb|3QPM|A Chain A, Crystal Structure Of Peroxiredoxin Prx4 From Pseudosciaena Crocea Length = 240

Iteration: 1
 Score = 69.3 bits (168), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 43/139 (30%), Positives = 72/139 (51%), Gaps = 8/139 (5%)
Query: 83  EGRNVSLSKFKGKPVVVYFYPADETPGCTKQACAFRDSYEKFKKAGAEVIGISGDDSSSH 142
           E + + LS ++GK +V +FYP D T  C  +  AF D   +F+    EV+  S D   +H
Sbjct: 66  EFKELKLSDYRGKYLVFFFYPLDFTFVCPTEIIAFSDRVHEFRAINTEVVACSVDSQFTH 125
Query: 143 KAFAKKYR-------LPYTLLSDEGNKVRKEWGVPADFFGSLPGRQTYILDKNGVVQLIY 195
            A+    R       +   LLSD  +++ K++GV  +  G    R  +I+D+ GV++ I 
Sbjct: 126 LAWIITPRKQGGLGPMKIPLLSDLTHQISKDYGVYLEDQGHTL-RGLFIIDEKGVLRQIT 184
Query: 196 NNQFQPEKHIDETLKFLQS 214
            N     + +DETL+ +Q+
Sbjct: 185 MNDLPVGRSVDETLRLVQA 203

>pdb|3HY2|A Chain A, Crystal Structure Of Sulfiredoxin In Complex With Peroxiredoxin I And Atp:mg2+ Length = 206

Iteration: 1
 Score = 68.6 bits (166), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 49/162 (30%), Positives = 80/162 (49%), Gaps = 14/162 (8%)
Query: 65  SAKVSKGQAPPSF----TLKDQEGRNVSLSKFKGKPVVVYFYPADETPGCTKQACAFRDS 120
           S     G   P+F     + D + +++SLS +KGK VV +FYP D T     +  AF D 
Sbjct: 3   SGNAKIGHPAPNFKATAVMPDGQFKDISLSDYKGKYVVFFFYPLDFTFVDPTEIIAFSDR 62
Query: 121 YEKFKKAGAEVIGISGDDSSSHKAFAKKYR-------LPYTLLSDEGNKVRKEWGV-PAD 172
            E+FKK  ++VIG S D    H  +    +       +   L+SD    + +++GV  AD
Sbjct: 63  AEEFKKLNSQVIGASVDSHFEHLEWVNTPKKQGGLGPMNIPLVSDPKRTIAQDYGVLKAD 122
Query: 173 FFGSLPGRQTYILDKNGVVQLIYNNQFQPEKHIDETLKFLQS 214
               +  R  +I+D  G+++ I  N     + +DETL+ +Q+
Sbjct: 123 --EGISFRGLFIIDDKGILRQITVNDLPVGRSVDETLRLVQA 162

>pdb|2H01|A Chain A, Py00414- Plasmodium Yoelii Thioredoxin Peroxidase I Length = 192

Iteration: 1
 Score = 68.2 bits (165), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 51/157 (32%), Positives = 78/157 (49%), Gaps = 15/157 (9%)
Query: 70  KGQAPPSFTLKDQEGRN----VSLSKFKGKP-VVVYFYPADETPGCTKQACAFRDSYEKF 124
           +GQAP SF  +   G N    VSLS F GK  V++YFYP D T  C  +  A   + + F
Sbjct: 3   QGQAP-SFKAEAVFGDNTFGEVSLSDFIGKKYVLLYFYPLDFTFVCPSEIIALDKALDSF 61
Query: 125 KKAGAEVIGISGDDSSSHKAFAKK-------YRLPYTLLSDEGNKVRKEWGVPADFFGSL 177
           K+   E++G S D   +H A+ K          + +TL+SD    + + + V   F  S+
Sbjct: 62  KERNVELLGCSVDSKFTHLAWKKTPLSQGGIGNIKHTLISDISKSIARSYDVL--FNESV 119
Query: 178 PGRQTYILDKNGVVQLIYNNQFQPEKHIDETLKFLQS 214
             R   ++DK GVVQ +  N     + +DE L+ + +
Sbjct: 120 ALRAFVLIDKQGVVQHLLVNNLALGRSVDEILRLIDA 156

>pdb|3TUE|A Chain A, The Structure Of Tryparedoxin Peroxidase I From Leishmania Major Length = 219

Iteration: 1
 Score = 67.8 bits (164), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 39/137 (28%), Positives = 72/137 (52%), Gaps = 8/137 (5%)
Query: 85  RNVSLSKFKGKPVVVYFYPADETPGCTKQACAFRDSYEKFKKAGAEVIGISGDDSSSHKA 144
           + +SLS +KGK VV++FYP D T  C  +  AF DS  +F +   EV+  S D   +H  
Sbjct: 47  KKISLSSYKGKWVVLFFYPLDFTFVCPTEVIAFSDSVSRFNELNCEVLACSIDSEYAHLQ 106
Query: 145 FAKKYR-------LPYTLLSDEGNKVRKEWGVPADFFGSLPGRQTYILDKNGVVQLIYNN 197
           +  + R       +   +L+D+   + + +GV  +  G +  R  +I+D +G+++ I  N
Sbjct: 107 WTLQDRKKGGLGTMAIPILADKTKNIARSYGVLEESQG-VAYRGLFIIDPHGMLRQITVN 165
Query: 198 QFQPEKHIDETLKFLQS 214
                + ++E L+ L++
Sbjct: 166 DMPVGRSVEEVLRLLEA 182

>pdb|3TKS|A Chain A, Crystal Structure Of Full-Length Human Peroxiredoxin 4 In Three Different Redox States Length = 246

Iteration: 1
 Score = 66.2 bits (160), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 43/143 (30%), Positives = 73/143 (51%), Gaps = 12/143 (8%)
Query: 81  DQEGRNVSLSKFKGKPVVVYFYPADETPGCTKQACAFRDSYEKFKKAGAEVIGISGDDSS 140
           D E + + L+ ++GK +V +FYP D T     +  AF D  E+F+    EV+  S D   
Sbjct: 70  DGEFKELKLTDYRGKYLVFFFYPLDFTFVXPTEIIAFGDRLEEFRSINTEVVACSVDSQF 129
Query: 141 SHKAFAKK---------YRLPYTLLSDEGNKVRKEWGVPADFFGSLPGRQTYILDKNGVV 191
           +H A+             R+P  LLSD  +++ K++GV  +  G    R  +I+D  G++
Sbjct: 130 THLAWINTPRRQGGLGPIRIP--LLSDLTHQISKDYGVYLEDSGHTL-RGLFIIDDKGIL 186
Query: 192 QLIYNNQFQPEKHIDETLKFLQS 214
           + I  N     + +DETL+ +Q+
Sbjct: 187 RQITLNDLPVGRSVDETLRLVQA 209

>pdb|3TJJ|A Chain A, Crystal Structure Of Human Peroxiredoxin Iv C245a Mutant In Sulfenylated Form Length = 254

Iteration: 1
 Score = 66.2 bits (160), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 43/143 (30%), Positives = 73/143 (51%), Gaps = 12/143 (8%)
Query: 81  DQEGRNVSLSKFKGKPVVVYFYPADETPGCTKQACAFRDSYEKFKKAGAEVIGISGDDSS 140
           D E + + L+ ++GK +V +FYP D T     +  AF D  E+F+    EV+  S D   
Sbjct: 78  DGEFKELKLTDYRGKYLVFFFYPLDFTFVXPTEIIAFGDRLEEFRSINTEVVACSVDSQF 137
Query: 141 SHKAFAKK---------YRLPYTLLSDEGNKVRKEWGVPADFFGSLPGRQTYILDKNGVV 191
           +H A+             R+P  LLSD  +++ K++GV  +  G    R  +I+D  G++
Sbjct: 138 THLAWINTPRRQGGLGPIRIP--LLSDLTHQISKDYGVYLEDSGHTL-RGLFIIDDKGIL 194
Query: 192 QLIYNNQFQPEKHIDETLKFLQS 214
           + I  N     + +DETL+ +Q+
Sbjct: 195 RQITLNDLPVGRSVDETLRLVQA 217

>pdb|2H66|A Chain A, The Crystal Structure Of Plasmodium Vivax 2-Cys Peroxiredoxin Length = 213

Iteration: 1
 Score = 65.9 bits (159), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 46/156 (29%), Positives = 76/156 (48%), Gaps = 14/156 (8%)
Query: 71  GQAPPSFTLKDQEGRN----VSLSKFKGKP-VVVYFYPADETPGCTKQACAFRDSYEKFK 125
           G+  P F  +   G N    V+L++F GK  V++YFYP D T  C  +  A   + + F 
Sbjct: 24  GKEAPFFKAEAVFGDNSFGEVNLTQFIGKKYVLLYFYPLDFTFVCPSEIIALDKALDAFH 83
Query: 126 KAGAEVIGISGDDSSSHKAFAKK-------YRLPYTLLSDEGNKVRKEWGVPADFFGSLP 178
           +   E++G S D   +H A+ K          + +TLLSD    + K++ V  D   S+ 
Sbjct: 84  ERNVELLGCSVDSKYTHLAWKKTPLAKGGIGNIKHTLLSDITKSISKDYNVLFD--DSVS 141
Query: 179 GRQTYILDKNGVVQLIYNNQFQPEKHIDETLKFLQS 214
            R   ++D NG+VQ +  N     + +DE L+ + +
Sbjct: 142 LRAFVLIDMNGIVQHLLVNNLAIGRSVDEILRIIDA 177

>pdb|3GKK|A Chain A, Insights Into The Alkyl Peroxide Reduction Activity Of Xanthomonas Campestris Bacterioferritin Comigratory Protein From The Trapped IntermediateLIGAND COMPLEX STRUCTURES Length = 163

Iteration: 1
 Score = 65.5 bits (158), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 42/136 (30%), Positives = 66/136 (48%), Gaps = 6/136 (4%)
Query: 84  GRNVSLSKFKGKPVVVYFYPADETPGCTKQACAFRDSYEKFKKAGAEVIGISGDDSSSHK 143
           G   +L    G  +V+YFYP D TPGCT +   F     +F KAGA+++G+S D   SH 
Sbjct: 25  GTQTTLRAHAGHWLVIYFYPKDSTPGCTTEGLDFNALLPEFDKAGAKILGVSRDSVKSHD 84
Query: 144 AFAKKYRLPYTLLSDEGNKVRKEWGV--PADFFG-SLPG--RQTYILDKNGVVQLIYNNQ 198
            F  K    + L+SD    + + + V    + +G  + G  R T++L   G V   +  +
Sbjct: 85  NFCAKQGFAFPLVSDGDEALCRAFDVIKEKNMYGKQVLGIERSTFLLSPEGQVVQAW-RK 143
Query: 199 FQPEKHIDETLKFLQS 214
            +   H D  L  L++
Sbjct: 144 VKVAGHADAVLAALKA 159

>pdb|3A2V|A Chain A, Peroxiredoxin (C207s) From Aeropyrum Pernix K1 Complexed With Hydrogen Peroxide Length = 249

Iteration: 1
 Score = 64.3 bits (155), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 35/128 (27%), Positives = 70/128 (54%), Gaps = 6/128 (4%)
Query: 93  KGKPVVVYFYPADETPGCTKQACAFRDSYEKFKKAGAEVIGISGDDSSSH---KAFAKKY 149
           +GK  V++ +PAD TP CT +  +F   YE F++ G ++IG+S D   SH   K + +++
Sbjct: 32  QGKWFVLFSHPADFTPVCTTEFVSFARRYEDFQRLGVDLIGLSVDSVFSHIKWKEWIERH 91
Query: 150 ---RLPYTLLSDEGNKVRKEWGVPADFFGSLPGRQTYILDKNGVVQLIYNNQFQPEKHID 206
              R+P+ +++D    V +  G+      +   R  +I+D  GV++ +     +  + +D
Sbjct: 92  IGVRIPFPIIADPQGTVARRLGLLHAESATHTVRGVFIVDARGVIRTMLYYPMELGRLVD 151
Query: 207 ETLKFLQS 214
           E L+ +++
Sbjct: 152 EILRIVKA 159

>pdb|2E2G|A Chain A, Crystal Structure Of Archaeal Peroxiredoxin, Thioredoxin Peroxidase From Aeropyrum Pernix K1 (Pre-Oxidation Form) Length = 250

Iteration: 1
 Score = 64.3 bits (155), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 35/128 (27%), Positives = 70/128 (54%), Gaps = 6/128 (4%)
Query: 93  KGKPVVVYFYPADETPGCTKQACAFRDSYEKFKKAGAEVIGISGDDSSSH---KAFAKKY 149
           +GK  V++ +PAD TP CT +  +F   YE F++ G ++IG+S D   SH   K + +++
Sbjct: 33  QGKWFVLFSHPADFTPVCTTEFVSFARRYEDFQRLGVDLIGLSVDSVFSHIKWKEWIERH 92
Query: 150 ---RLPYTLLSDEGNKVRKEWGVPADFFGSLPGRQTYILDKNGVVQLIYNNQFQPEKHID 206
              R+P+ +++D    V +  G+      +   R  +I+D  GV++ +     +  + +D
Sbjct: 93  IGVRIPFPIIADPQGTVARRLGLLHAESATHTVRGVFIVDARGVIRTMLYYPMELGRLVD 152
Query: 207 ETLKFLQS 214
           E L+ +++
Sbjct: 153 EILRIVKA 160

>pdb|3A5W|A Chain A, Peroxiredoxin (Wild Type) From Aeropyrum Pernix K1 (Reduced Form) Length = 249

Iteration: 1
 Score = 64.3 bits (155), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 35/128 (27%), Positives = 70/128 (54%), Gaps = 6/128 (4%)
Query: 93  KGKPVVVYFYPADETPGCTKQACAFRDSYEKFKKAGAEVIGISGDDSSSH---KAFAKKY 149
           +GK  V++ +PAD TP CT +  +F   YE F++ G ++IG+S D   SH   K + +++
Sbjct: 32  QGKWFVLFSHPADFTPVCTTEFVSFARRYEDFQRLGVDLIGLSVDSVFSHIKWKEWIERH 91
Query: 150 ---RLPYTLLSDEGNKVRKEWGVPADFFGSLPGRQTYILDKNGVVQLIYNNQFQPEKHID 206
              R+P+ +++D    V +  G+      +   R  +I+D  GV++ +     +  + +D
Sbjct: 92  IGVRIPFPIIADPQGTVARRLGLLHAESATHTVRGVFIVDARGVIRTMLYYPMELGRLVD 151
Query: 207 ETLKFLQS 214
           E L+ +++
Sbjct: 152 EILRIVKA 159

>pdb|1UUL|A Chain A, Tryparedoxin Peroxidase (Txnpx) From Trypanosoma Cruzi In The Reduced State Length = 202

Iteration: 1
 Score = 63.9 bits (154), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 39/137 (28%), Positives = 69/137 (50%), Gaps = 8/137 (5%)
Query: 85  RNVSLSKFKGKPVVVYFYPADETPGCTKQACAFRDSYEKFKKAGAEVIGISGDDSSSHKA 144
           + V+L+ +KGK +V++FYP D T  C  + C F D  ++F   G EV+  S D   SH A
Sbjct: 27  KKVALTSYKGKWLVLFFYPMDFTFVCPTEICQFSDRVKEFSDIGCEVLACSMDSEYSHLA 86
Query: 145 FAKKYR-------LPYTLLSDEGNKVRKEWGVPADFFGSLPGRQTYILDKNGVVQLIYNN 197
           +    R       +   +L+D+   + K +GV  +  G +  R  +I+D    ++ I  N
Sbjct: 87  WTSIERKRGGLGQMNIPILADKTKCIMKSYGVLKEEDG-VAYRGLFIIDPKQNLRQITVN 145
Query: 198 QFQPEKHIDETLKFLQS 214
                + +DE L+ +++
Sbjct: 146 DLPVGRDVDEALRLVKA 162

>pdb|1X0R|A Chain A, Thioredoxin Peroxidase From Aeropyrum Pernix K1 Length = 249

Iteration: 1
 Score = 62.0 bits (149), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 35/128 (27%), Positives = 69/128 (53%), Gaps = 6/128 (4%)
Query: 93  KGKPVVVYFYPADETPGCTKQACAFRDSYEKFKKAGAEVIGISGDDSSSH---KAFAKKY 149
           +GK  V++ +PAD TP CT +  +F   YE F++ G ++IG+S D   SH   K + +++
Sbjct: 32  QGKWFVLFSHPADFTPVCTTEFVSFARRYEDFQRLGVDLIGLSVDSVFSHIKWKEWIERH 91
Query: 150 ---RLPYTLLSDEGNKVRKEWGVPADFFGSLPGRQTYILDKNGVVQLIYNNQFQPEKHID 206
              R+P+ +++D    V +  G+      +   R  +I+D  GV++       +  + +D
Sbjct: 92  IGVRIPFPIIADPQGTVARRLGLLHAESATHTVRGVFIVDARGVIRTXLYYPXELGRLVD 151
Query: 207 ETLKFLQS 214
           E L+ +++
Sbjct: 152 EILRIVKA 159

>pdb|3GKN|A Chain A, Insights Into The Alkyl Peroxide Reduction Activity Of Xanthomonas Campestris Bacterioferritin Comigratory Protein From The Trapped Intermediate/ligand Complex Structures Length = 163

Iteration: 1
 Score = 61.6 bits (148), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 41/136 (30%), Positives = 65/136 (47%), Gaps = 6/136 (4%)
Query: 84  GRNVSLSKFKGKPVVVYFYPADETPGCTKQACAFRDSYEKFKKAGAEVIGISGDDSSSHK 143
           G   +L    G  +V+YFYP D TPG T +   F     +F KAGA+++G+S D   SH 
Sbjct: 25  GTQTTLRAHAGHWLVIYFYPKDSTPGATTEGLDFNALLPEFDKAGAKILGVSRDSVKSHD 84
Query: 144 AFAKKYRLPYTLLSDEGNKVRKEWGV--PADFFG-SLPG--RQTYILDKNGVVQLIYNNQ 198
            F  K    + L+SD    + + + V    + +G  + G  R T++L   G V   +  +
Sbjct: 85  NFCAKQGFAFPLVSDGDEALCRAFDVIKEKNMYGKQVLGIERSTFLLSPEGQVVQAW-RK 143
Query: 199 FQPEKHIDETLKFLQS 214
            +   H D  L  L++
Sbjct: 144 VKVAGHADAVLAALKA 159

>pdb|3GKM|A Chain A, Insights Into The Alkyl Peroxide Reduction Activity Of Xanthomonas Campestris Bacterioferritin Comigratory Protein From The Trapped IntermediateLIGAND COMPLEX STRUCTURES Length = 163

Iteration: 1
 Score = 61.2 bits (147), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 41/136 (30%), Positives = 66/136 (48%), Gaps = 6/136 (4%)
Query: 84  GRNVSLSKFKGKPVVVYFYPADETPGCTKQACAFRDSYEKFKKAGAEVIGISGDDSSSHK 143
           G   +L    G  +V+YFYP D TPG T +   F     +F KAGA+++G+S D   SH 
Sbjct: 25  GTQTTLRAHAGHWLVIYFYPKDSTPGSTTEGLDFNALLPEFDKAGAKILGVSRDSVKSHD 84
Query: 144 AFAKKYRLPYTLLSDEGNKVRKEWGV--PADFFG-SLPG--RQTYILDKNGVVQLIYNNQ 198
            F+ K    + L+SD    + + + V    + +G  + G  R T++L   G V   +  +
Sbjct: 85  NFSAKQGFAFPLVSDGDEALCRAFDVIKEKNMYGKQVLGIERSTFLLSPEGQVVQAW-RK 143
Query: 199 FQPEKHIDETLKFLQS 214
            +   H D  L  L++
Sbjct: 144 VKVAGHADAVLAALKA 159

>pdb|1E2Y|A Chain A, Tryparedoxin Peroxidase From Crithidia Fasciculata Length = 188

Iteration: 1
 Score = 60.5 bits (145), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 40/137 (29%), Positives = 68/137 (49%), Gaps = 8/137 (5%)
Query: 85  RNVSLSKFKGKPVVVYFYPADETPGCTKQACAFRDSYEKFKKAGAEVIGISGDDSSSHKA 144
           + VSLS +KGK VV++FYP D T  C  +   F D  ++F +   EVI  S D   SH  
Sbjct: 27  KKVSLSSYKGKYVVLFFYPXDFTFVCPTEIIQFSDDAKRFAEINTEVISCSCDSEYSHLQ 86
Query: 145 FAKKYRLPYTL-------LSDEGNKVRKEWGVPADFFGSLPGRQTYILDKNGVVQLIYNN 197
           +    R    L       L+D+   + + +GV  D    +  R  +I+D NG ++ I  N
Sbjct: 87  WTSVDRKKGGLGPXAIPXLADKTKAIARAYGV-LDEDSGVAYRGVFIIDPNGKLRQIIIN 145
Query: 198 QFQPEKHIDETLKFLQS 214
                ++++E ++ +++
Sbjct: 146 DXPIGRNVEEVIRLVEA 162

>pdb|4EO3|A Chain A, Peroxiredoxin Nitroreductase Fusion Enzyme Length = 322

Iteration: 1
 Score = 60.1 bits (144), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 43/137 (31%), Positives = 69/137 (50%), Gaps = 18/137 (13%)
Query: 77  FTLKDQEGRNVSLSKFKGKPVVVYFYPADETPGCTKQACAF-RDSYEKFKKAGAEVIGIS 135
           F L   EG+  +     GK  +++F+P   T G T++A  F R+++EK     A+V+GIS
Sbjct: 7   FELLTDEGKTFTHVDLYGKYTILFFFPKAGTSGSTREAVEFSRENFEK-----AQVVGIS 61
Query: 136 GDDSSSHKAFAKKYRLPYTLLSDEGNKVRKEWGVPADFFGSLPG----RQTYILDKNGVV 191
            D   + K F +K  L  TLLSD         G+  +FF  L      R T+++D+ G V
Sbjct: 62  RDSVEALKRFKEKNDLKVTLLSDPE-------GILHEFFNVLENGKTVRSTFLIDRWGFV 114
Query: 192 QLIYNNQFQPEKHIDET 208
           +  +  + + E H+ E 
Sbjct: 115 RKEW-RRVKVEGHVQEV 130

>pdb|3A2W|A Chain A, Peroxiredoxin (C50s) From Aeropytum Pernix K1 (Peroxide-Bound Form) Length = 249

Iteration: 1
 Score = 60.1 bits (144), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 34/128 (26%), Positives = 69/128 (53%), Gaps = 6/128 (4%)
Query: 93  KGKPVVVYFYPADETPGCTKQACAFRDSYEKFKKAGAEVIGISGDDSSSH---KAFAKKY 149
           +GK  V++ +PAD TP  T +  +F   YE F++ G ++IG+S D   SH   K + +++
Sbjct: 32  QGKWFVLFSHPADFTPVSTTEFVSFARRYEDFQRLGVDLIGLSVDSVFSHIKWKEWIERH 91
Query: 150 ---RLPYTLLSDEGNKVRKEWGVPADFFGSLPGRQTYILDKNGVVQLIYNNQFQPEKHID 206
              R+P+ +++D    V +  G+      +   R  +I+D  GV++ +     +  + +D
Sbjct: 92  IGVRIPFPIIADPQGTVARRLGLLHAESATHTVRGVFIVDARGVIRTMLYYPMELGRLVD 151
Query: 207 ETLKFLQS 214
           E L+ +++
Sbjct: 152 EILRIVKA 159

>pdb|2E2M|A Chain A, Crystal Structure Of Archaeal Peroxiredoxin, Thioredoxin Peroxidase From Aeropyrum Pernix K1 (Sulfinic Acid Form) Length = 250

Iteration: 1
 Score = 59.7 bits (143), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 34/128 (26%), Positives = 69/128 (53%), Gaps = 6/128 (4%)
Query: 93  KGKPVVVYFYPADETPGCTKQACAFRDSYEKFKKAGAEVIGISGDDSSSH---KAFAKKY 149
           +GK  V++ +PAD TP  T +  +F   YE F++ G ++IG+S D   SH   K + +++
Sbjct: 33  QGKWFVLFSHPADFTPVXTTEFVSFARRYEDFQRLGVDLIGLSVDSVFSHIKWKEWIERH 92
Query: 150 ---RLPYTLLSDEGNKVRKEWGVPADFFGSLPGRQTYILDKNGVVQLIYNNQFQPEKHID 206
              R+P+ +++D    V +  G+      +   R  +I+D  GV++ +     +  + +D
Sbjct: 93  IGVRIPFPIIADPQGTVARRLGLLHAESATHTVRGVFIVDARGVIRTMLYYPMELGRLVD 152
Query: 207 ETLKFLQS 214
           E L+ +++
Sbjct: 153 EILRIVKA 160

>pdb|2ZCT|A Chain A, Oxidation Of Archaeal Peroxiredoxin Involves A Hypervalent Sulfur Intermediate Length = 249

Iteration: 1
 Score = 59.7 bits (143), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 34/128 (26%), Positives = 69/128 (53%), Gaps = 6/128 (4%)
Query: 93  KGKPVVVYFYPADETPGCTKQACAFRDSYEKFKKAGAEVIGISGDDSSSH---KAFAKKY 149
           +GK  V++ +PAD TP  T +  +F   YE F++ G ++IG+S D   SH   K + +++
Sbjct: 32  QGKWFVLFSHPADFTPVXTTEFVSFARRYEDFQRLGVDLIGLSVDSVFSHIKWKEWIERH 91
Query: 150 ---RLPYTLLSDEGNKVRKEWGVPADFFGSLPGRQTYILDKNGVVQLIYNNQFQPEKHID 206
              R+P+ +++D    V +  G+      +   R  +I+D  GV++ +     +  + +D
Sbjct: 92  IGVRIPFPIIADPQGTVARRLGLLHAESATHTVRGVFIVDARGVIRTMLYYPMELGRLVD 151
Query: 207 ETLKFLQS 214
           E L+ +++
Sbjct: 152 EILRIVKA 159

>pdb|2C0D|A Chain A, Structure Of The Mitochondrial 2-Cys Peroxiredoxin From Plasmodium Falciparum Length = 221

Iteration: 1
 Score = 58.5 bits (140), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 43/143 (30%), Positives = 65/143 (45%), Gaps = 10/143 (6%)
Query: 80  KDQEGRNVSLSKFKG-KPVVVYFYPADETPGCTKQACAFRDSYEKFKKAGAEVIGISGDD 138
           K+ E  NV LS F G K   + FYP + T  C  +   F    + F+    E++GIS D 
Sbjct: 41  KNNEIINVDLSSFIGQKYCCLLFYPLNYTFVCPTEIIEFNKHIKDFENKNVELLGISVDS 100
Query: 139 SSSHKAFAKK-------YRLPYTLLSDEGNKVRKEWGVPADFFGSLPGRQTYILDKNGVV 191
             SH A+            + +TL+SD    + K + V  D   S   R  +I+DKNG V
Sbjct: 101 VYSHLAWKNMPIEKGGIGNVEFTLVSDINKDISKNYNVLYD--NSFALRGLFIIDKNGCV 158
Query: 192 QLIYNNQFQPEKHIDETLKFLQS 214
           +    N     +++ E L+ + S
Sbjct: 159 RHQTVNDLPIGRNVQEVLRTIDS 181

>pdb|2CV4|A Chain A, Crystal Structure Of An Archaeal Peroxiredoxin From The Aerobic Hyperthermophilic Crenarchaeon Aeropyrum Pernix K1 Length = 250

Iteration: 1
 Score = 57.4 bits (137), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 34/128 (26%), Positives = 68/128 (53%), Gaps = 6/128 (4%)
Query: 93  KGKPVVVYFYPADETPGCTKQACAFRDSYEKFKKAGAEVIGISGDDSSSH---KAFAKKY 149
           +GK  V++ +PAD TP  T +  +F   YE F++ G ++IG+S D   SH   K + +++
Sbjct: 33  QGKWFVLFSHPADFTPVXTTEFVSFARRYEDFQRLGVDLIGLSVDSVFSHIKWKEWIERH 92
Query: 150 ---RLPYTLLSDEGNKVRKEWGVPADFFGSLPGRQTYILDKNGVVQLIYNNQFQPEKHID 206
              R+P+ +++D    V +  G+      +   R  +I+D  GV++       +  + +D
Sbjct: 93  IGVRIPFPIIADPQGTVARRLGLLHAESATHTVRGVFIVDARGVIRTXLYYPXELGRLVD 152
Query: 207 ETLKFLQS 214
           E L+ +++
Sbjct: 153 EILRIVKA 160

>pdb|3SBC|A Chain A, Crystal Structure Of Saccharomyces Cerevisiae Tsa1c47s Mutant Protein Length = 216

Iteration: 1
 Score = 56.6 bits (135), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 40/135 (29%), Positives = 71/135 (52%), Gaps = 8/135 (5%)
Query: 87  VSLSKFKGKPVVVYFYPADETPGCTKQACAFRDSYEKFKKAGAEVIGISGDDSSSHKAFA 146
           VSL K+KGK VV+ F P   T     +  AF ++ +KF++ GA+V+  S D   S  A+ 
Sbjct: 45  VSLDKYKGKYVVLAFIPLAFTFVSPTEIIAFSEAAKKFEEQGAQVLFASTDSEYSLLAWT 104
Query: 147 KKYR-------LPYTLLSDEGNKVRKEWGVPADFFGSLPGRQTYILDKNGVVQLIYNNQF 199
              R       +   LL+D  + + +++GV  +  G +  R  +I+D  GV++ I  N  
Sbjct: 105 NIPRKEGGLGPINIPLLADTNHSLSRDYGVLIEEEG-VALRGLFIIDPKGVIRHITINDL 163
Query: 200 QPEKHIDETLKFLQS 214
              +++DE L+ +++
Sbjct: 164 PVGRNVDEALRLVEA 178

>pdb|1WE0|A Chain A, Crystal Structure Of Peroxiredoxin (Ahpc) From Amphibacillus Xylanus Length = 187

Iteration: 1
 Score = 56.6 bits (135), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 36/116 (31%), Positives = 58/116 (50%), Gaps = 5/116 (4%)
Query: 86  NVSLSKFKGKPVVVYFYPADETPGCTKQACAFRDSYEKFKKAGAEVIGISGDDSSSHKAF 145
            V+ +  KGK  +V FYPAD +  C  +    +  Y + KK G EV  +S D    HKA+
Sbjct: 23  EVTEADLKGKWSIVVFYPADFSFVCPTELEDVQKEYAELKKLGVEVYSVSTDTHFVHKAW 82
Query: 146 AKKY----RLPYTLLSDEGNKVRKEWGVPADFFGSLPGRQTYILDKNGVVQLIYNN 197
            +       + Y ++ D    + +++ V  +  G L  R T+I+D +GV+Q I  N
Sbjct: 83  HENSPAVGSIEYIMIGDPSQTISRQFDVLNEETG-LADRGTFIIDPDGVIQAIEIN 137

>pdb|1XXU|A Chain A, Crystal Structure Of Ahpe From Mycrobacterium Tuberculosis, A 1-Cys Peroxiredoxin Length = 153

Iteration: 1
 Score = 56.2 bits (134), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 40/145 (27%), Positives = 74/145 (51%), Gaps = 6/145 (4%)
Query: 68  VSKGQAPPSFTLKDQEGRNVSLSKFKG-KPVVVYFYPADETPGCTKQACAFRDSYEKFKK 126
           ++ G   P FTL+DQ  + V+L  ++G K V++ F+P   T  C  +    RD   +F+ 
Sbjct: 2   LNVGATAPDFTLRDQNQQLVTLRGYRGAKNVLLVFFPLAFTGICQGELDQLRDHLPEFEN 61
Query: 127 AGAEVIGISGDDSSSHKAFAKKYRLPYTLLSD--EGNKVRKEWGVPADFFGSLPGRQTYI 184
             +  + IS     +HK +A +    + LLSD      V + +GV  +  G +  R T++
Sbjct: 62  DDSAALAISVGPPPTHKIWATQSGFTFPLLSDFWPHGAVSQAYGVFNEQAG-IANRGTFV 120
Query: 185 LDKNGVVQLIYNNQFQPEKHIDETL 209
           +D++G+++  +    QP +  D+ L
Sbjct: 121 VDRSGIIR--FAEMKQPGEVRDQRL 143

>pdb|3IXR|A Chain A, Crystal Structure Of Xylella Fastidiosa Prxq C47s Mutant Length = 179

Iteration: 1
 Score = 55.1 bits (131), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 30/100 (30%), Positives = 53/100 (53%), Gaps = 2/100 (2%)
Query: 88  SLSKFKGKPVVVYFYPADETPGCTKQACAFRDSYEKFKKAGAEVIGISGDDSSSHKAFAK 147
           +LS +  + +V+YFYP D TPG + +   F     +F++  A V+G+S D   SH +F  
Sbjct: 45  TLSDYTNQWLVLYFYPKDNTPGSSTEGLEFNLLLPQFEQINATVLGVSRDSVKSHDSFCA 104
Query: 148 KYRLPYTLLSDEGNKVRKEWGVPADFFGSLPGRQTYILDK 187
           K    + L+SD    + K + V  +   ++ GRQ   +++
Sbjct: 105 KQGFTFPLVSDSDAILCKAFDVIKE--KTMYGRQVIGIER 142

>pdb|2BMX|A Chain A, Mycobacterium Tuberculosis Ahpc Length = 195

Iteration: 1
 Score = 54.3 bits (129), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 36/126 (28%), Positives = 64/126 (50%), Gaps = 8/126 (6%)
Query: 94  GKPVVVYFYPADETPGCTKQACAFRDSYEKFKKAGAEVIGISGDDSSSHKAFAKKYR--- 150
           GK  VV+F+P D T  C  +  AF    ++F+   A+++G+S D   +H  +  ++    
Sbjct: 45  GKWRVVFFWPKDFTFVCPTEIAAFSKLNDEFEDRDAQILGVSIDSEFAHFQWRAQHNDLK 104
Query: 151 -LPYTLLSDEGNKVRKEWGV-PADFFGSLPGRQTYILDKNGVVQLIYNNQFQPEKHIDET 208
            LP+  LSD   ++ +  GV  AD    +  R T+I+D N  +Q +        +++DE 
Sbjct: 105 TLPFPXLSDIKRELSQAAGVLNAD---GVADRVTFIVDPNNEIQFVSATAGSVGRNVDEV 161
Query: 209 LKFLQS 214
           L+ L +
Sbjct: 162 LRVLDA 167

>pdb|3C71|A Chain A, Struture Of A Resa Variant With A Dsba-Like Active Site Motif (Cphc) Length = 143

Iteration: 1
 Score = 52.8 bits (125), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 36/139 (25%), Positives = 64/139 (46%), Gaps = 7/139 (5%)
Query: 69  SKGQAPPSFTLKDQEGRNVSLSKFKGKPVVVYFYPADETPGCTKQACAFRDSYEKFKKAG 128
           S+G   P+F L+D  G+ + LS  KGK V + F+     P C K+     + Y+ FK  G
Sbjct: 1   SEGSDAPNFVLEDTNGKRIELSDLKGKGVFLNFW-GTWCPHCKKEFPYMANQYKHFKSQG 59
Query: 129 AEVIGIS-GDDSSSHKAFAKKYRLPYTLLSDEGNKVRKEWGV---PADFFGSLPGRQTYI 184
            E++ ++ G+   +   F K Y + + ++ D   +V   + V   P  F  +  G+   +
Sbjct: 60  VEIVAVNVGESKIAVHNFMKSYGVNFPVVLDTDRQVLDAYDVSPLPTTFLINPEGKVVKV 119
Query: 185 LDKNGVVQLI--YNNQFQP 201
           +       +I  Y N  +P
Sbjct: 120 VTGTMTESMIHDYMNLIKP 138

>pdb|1XVW|A Chain A, Crystal Structure Of Ahpe From Mycobacterium Tuberculosis, A 1-Cys Peroxiredoxin Length = 160

Iteration: 1
 Score = 52.0 bits (123), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 40/148 (27%), Positives = 74/148 (50%), Gaps = 6/148 (4%)
Query: 65  SAKVSKGQAPPSFTLKDQEGRNVSLSKFKG-KPVVVYFYPADETPGCTKQACAFRDSYEK 123
           S  ++ G   P FTL+DQ  + V+L  ++G K V++ F+P   T     +    RD   +
Sbjct: 6   SHMLNVGATAPDFTLRDQNQQLVTLRGYRGAKNVLLVFFPLAFTGIXQGELDQLRDHLPE 65
Query: 124 FKKAGAEVIGISGDDSSSHKAFAKKYRLPYTLLSD--EGNKVRKEWGVPADFFGSLPGRQ 181
           F+   +  + IS     +HK +A +    + LLSD      V + +GV  +  G +  R 
Sbjct: 66  FENDDSAALAISVGPPPTHKIWATQSGFTFPLLSDFWPHGAVSQAYGVFNEQAG-IANRG 124
Query: 182 TYILDKNGVVQLIYNNQFQPEKHIDETL 209
           T+++D++G+++  +    QP +  D+ L
Sbjct: 125 TFVVDRSGIIR--FAEMKQPGEVRDQRL 150

>pdb|2H1B|A Chain A, Resa E80q Length = 143

Iteration: 1
 Score = 52.0 bits (123), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 37/139 (26%), Positives = 64/139 (46%), Gaps = 7/139 (5%)
Query: 69  SKGQAPPSFTLKDQEGRNVSLSKFKGKPVVVYFYPADETPGCTKQACAFRDSYEKFKKAG 128
           S+G   P+F L+D  G+ + LS  KGK V + F+     P C KQ     + Y+ FK  G
Sbjct: 1   SEGSDAPNFVLEDTNGKRIELSDLKGKGVFLNFWGTWCEP-CKKQFPYMANQYKHFKSQG 59
Query: 129 AEVIGIS-GDDSSSHKAFAKKYRLPYTLLSDEGNKVRKEWGV---PADFFGSLPGRQTYI 184
            E++ ++ G+   +   F K Y + + ++ D   +V   + V   P  F  +  G+   +
Sbjct: 60  VEIVAVNVGESKIAVHNFMKSYGVNFPVVLDTDRQVLDAYDVSPLPTTFLINPEGKVVKV 119
Query: 185 LDKNGVVQLI--YNNQFQP 201
           +       +I  Y N  +P
Sbjct: 120 VTGTMTESMIHDYMNLIKP 138

>pdb|2H1A|A Chain A, Resa C74a Variant Length = 143

Iteration: 1
 Score = 51.6 bits (122), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 36/139 (25%), Positives = 64/139 (46%), Gaps = 7/139 (5%)
Query: 69  SKGQAPPSFTLKDQEGRNVSLSKFKGKPVVVYFYPADETPGCTKQACAFRDSYEKFKKAG 128
           S+G   P+F L+D  G+ + LS  KGK V + F+     P C K+     + Y+ FK  G
Sbjct: 1   SEGSDAPNFVLEDTNGKRIELSDLKGKGVFLNFWGTWAEP-CKKEFPYMANQYKHFKSQG 59
Query: 129 AEVIGIS-GDDSSSHKAFAKKYRLPYTLLSDEGNKVRKEWGV---PADFFGSLPGRQTYI 184
            E++ ++ G+   +   F K Y + + ++ D   +V   + V   P  F  +  G+   +
Sbjct: 60  VEIVAVNVGESKIAVHNFMKSYGVNFPVVLDTDRQVLDAYDVSPLPTTFLINPEGKVVKV 119
Query: 185 LDKNGVVQLI--YNNQFQP 201
           +       +I  Y N  +P
Sbjct: 120 VTGTMTESMIHDYMNLIKP 138

>pdb|3EMP|A Chain A, Crystal Structure Of The S-Acetanilide Modified Form Of C165s Ahpc Length = 186

Iteration: 1
 Score = 50.8 bits (120), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 33/120 (27%), Positives = 58/120 (48%), Gaps = 5/120 (4%)
Query: 79  LKDQEGRNVSLSKFKGKPVVVYFYPADETPGCTKQACAFRDSYEKFKKAGAEVIGISGDD 138
            K+ E   V+    +G+  V +FYPAD T  C  +     D YE+ +K G +V  +S D 
Sbjct: 15  FKNGEFIEVTEKDTEGRWSVFFFYPADFTFVCPTELGDVADHYEELQKLGVDVYSVSTDT 74
Query: 139 SSSHKAFAKK----YRLPYTLLSDEGNKVRKEWGVPADFFGSLPGRQTYILDKNGVVQLI 194
             +HKA+        ++ Y ++ D    + + +    +  G L  R T+++D  G++Q I
Sbjct: 75  HFTHKAWHSSSETIAKIKYAMIGDPTGALTRNFDNMREDEG-LADRATFVVDPQGIIQAI 133

>pdb|1YEP|A Chain A, Structural And Biochemical Analysis Of The Link Between Enzymatic Activity And Olgomerization In Ahpc, A Bacterial Peroxiredoxin. Length = 186

Iteration: 1
 Score = 50.8 bits (120), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 33/120 (27%), Positives = 58/120 (48%), Gaps = 5/120 (4%)
Query: 79  LKDQEGRNVSLSKFKGKPVVVYFYPADETPGCTKQACAFRDSYEKFKKAGAEVIGISGDD 138
            K+ E   V+    +G+  V +FYPAD T  C  +     D YE+ +K G +V  +S D 
Sbjct: 15  FKNGEFIEVTEKDTEGRWSVFFFYPADFTFVCPTELGDVADHYEELQKLGVDVYSVSTDT 74
Query: 139 SSSHKAFAKK----YRLPYTLLSDEGNKVRKEWGVPADFFGSLPGRQTYILDKNGVVQLI 194
             +HKA+        ++ Y ++ D    + + +    +  G L  R T+++D  G++Q I
Sbjct: 75  HFTHKAWHSSSETIAKIKYAMIGDPTGALTRNFDNMREDEG-LADRATFVVDPQGIIQAI 133

>pdb|1ST9|A Chain A, Crystal Structure Of A Soluble Domain Of Resa In The Oxidised Form Length = 143

Iteration: 1
 Score = 50.8 bits (120), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 36/139 (25%), Positives = 64/139 (46%), Gaps = 7/139 (5%)
Query: 69  SKGQAPPSFTLKDQEGRNVSLSKFKGKPVVVYFYPADETPGCTKQACAFRDSYEKFKKAG 128
           S+G   P+F L+D  G+ + LS  KGK V + F+     P C K+     + Y+ FK  G
Sbjct: 1   SEGSDAPNFVLEDTNGKRIELSDLKGKGVFLNFWGTWCEP-CKKEFPYMANQYKHFKSQG 59
Query: 129 AEVIGIS-GDDSSSHKAFAKKYRLPYTLLSDEGNKVRKEWGV---PADFFGSLPGRQTYI 184
            E++ ++ G+   +   F K Y + + ++ D   +V   + V   P  F  +  G+   +
Sbjct: 60  VEIVAVNVGESKIAVHNFMKSYGVNFPVVLDTDRQVLDAYDVSPLPTTFLINPEGKVVKV 119
Query: 185 LDKNGVVQLI--YNNQFQP 201
           +       +I  Y N  +P
Sbjct: 120 VTGTMTESMIHDYMNLIKP 138

>pdb|1YEX|A Chain A, Structural And Biochemical Analysis Of The Link Between Enzymatic Activity And Oligomerization In Ahpc, A Bacterial Peroxiredoxin. Length = 186

Iteration: 1
 Score = 50.1 bits (118), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 33/120 (27%), Positives = 57/120 (47%), Gaps = 5/120 (4%)
Query: 79  LKDQEGRNVSLSKFKGKPVVVYFYPADETPGCTKQACAFRDSYEKFKKAGAEVIGISGDD 138
            K+ E   V+    +G+  V +FYPAD T  C  +     D YE+ +K G +V  +S D 
Sbjct: 15  FKNGEFIEVTEKDTEGRWSVFFFYPADFTFVCPTELGDVADHYEELQKLGVDVYSVSTDT 74
Query: 139 SSSHKAFAKK----YRLPYTLLSDEGNKVRKEWGVPADFFGSLPGRQTYILDKNGVVQLI 194
              HKA+        ++ Y ++ D    + + +    +  G L  R T+++D  G++Q I
Sbjct: 75  HFDHKAWHSSSETIAKIKYAMIGDPTGALTRNFDNMREDEG-LADRATFVVDPQGIIQAI 133

>pdb|1YF1|A Chain A, Structural And Biochemical Analysis Of The Link Between Enzymatic Activity And Oligomerization In Ahpc, A Bacterial Peroxiredoxin. Length = 186

Iteration: 1
 Score = 49.7 bits (117), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 33/120 (27%), Positives = 57/120 (47%), Gaps = 5/120 (4%)
Query: 79  LKDQEGRNVSLSKFKGKPVVVYFYPADETPGCTKQACAFRDSYEKFKKAGAEVIGISGDD 138
            K+ E   V+    +G+  V +FYPAD T  C  +     D YE+ +K G +V  +S D 
Sbjct: 15  FKNGEFIEVTEKDTEGRWSVFFFYPADFTFVCPTELGDVADHYEELQKLGVDVYSVSTDT 74
Query: 139 SSSHKAFAKK----YRLPYTLLSDEGNKVRKEWGVPADFFGSLPGRQTYILDKNGVVQLI 194
              HKA+        ++ Y ++ D    + + +    +  G L  R T+++D  G++Q I
Sbjct: 75  HFVHKAWHSSSETIAKIKYAMIGDPTGALTRNFDNMREDEG-LADRATFVVDPQGIIQAI 133

>pdb|1YF0|A Chain A, Structural And Biochemical Analysis Of The Link Between Enzymatic Activity And Oligomerization In Ahpc, A Bacterial Peroxiredoxin. Length = 186

Iteration: 1
 Score = 49.3 bits (116), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 33/120 (27%), Positives = 57/120 (47%), Gaps = 5/120 (4%)
Query: 79  LKDQEGRNVSLSKFKGKPVVVYFYPADETPGCTKQACAFRDSYEKFKKAGAEVIGISGDD 138
            K+ E   V+    +G+  V +FYPAD T  C  +     D YE+ +K G +V  +S D 
Sbjct: 15  FKNGEFIEVTEKDTEGRWSVFFFYPADFTFVCPTELGDVADHYEELQKLGVDVYSVSTDT 74
Query: 139 SSSHKAFAKK----YRLPYTLLSDEGNKVRKEWGVPADFFGSLPGRQTYILDKNGVVQLI 194
              HKA+        ++ Y ++ D    + + +    +  G L  R T+++D  G++Q I
Sbjct: 75  HFIHKAWHSSSETIAKIKYAMIGDPTGALTRNFDNMREDEG-LADRATFVVDPQGIIQAI 133

>pdb|2F9S|A Chain A, 2nd Crystal Structure Of A Soluble Domain Of Resa In The Oxidised Form Length = 151

Iteration: 1
 Score = 48.9 bits (115), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 29/102 (28%), Positives = 51/102 (50%), Gaps = 2/102 (1%)
Query: 69  SKGQAPPSFTLKDQEGRNVSLSKFKGKPVVVYFYPADETPGCTKQACAFRDSYEKFKKAG 128
           S+G   P+F L+D  G+ + LS  KGK V + F+     P C K+     + Y+ FK  G
Sbjct: 1   SEGSDAPNFVLEDTNGKRIELSDLKGKGVFLNFWGTWCEP-CKKEFPYXANQYKHFKSQG 59
Query: 129 AEVIGIS-GDDSSSHKAFAKKYRLPYTLLSDEGNKVRKEWGV 169
            E++ ++ G+   +   F K Y + + ++ D   +V   + V
Sbjct: 60  VEIVAVNVGESKIAVHNFXKSYGVNFPVVLDTDRQVLDAYDV 101

>pdb|2H1G|A Chain A, Resa C74aC77A Length = 143

Iteration: 1
 Score = 47.8 bits (112), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 35/139 (25%), Positives = 63/139 (45%), Gaps = 7/139 (5%)
Query: 69  SKGQAPPSFTLKDQEGRNVSLSKFKGKPVVVYFYPADETPGCTKQACAFRDSYEKFKKAG 128
           S+G   P+F L+D  G+ + LS  KGK V + F+     P   K+     + Y+ FK  G
Sbjct: 1   SEGSDAPNFVLEDTNGKRIELSDLKGKGVFLNFWGTWAEP-AKKEFPYMANQYKHFKSQG 59
Query: 129 AEVIGIS-GDDSSSHKAFAKKYRLPYTLLSDEGNKVRKEWGV---PADFFGSLPGRQTYI 184
            E++ ++ G+   +   F K Y + + ++ D   +V   + V   P  F  +  G+   +
Sbjct: 60  VEIVAVNVGESKIAVHNFMKSYGVNFPVVLDTDRQVLDAYDVSPLPTTFLINPEGKVVKV 119
Query: 185 LDKNGVVQLI--YNNQFQP 201
           +       +I  Y N  +P
Sbjct: 120 VTGTMTESMIHDYMNLIKP 138

>pdb|3HDC|A Chain A, The Crystal Structure Of Thioredoxin Protein From Geobacter Metallireducens Length = 158

Iteration: 1
 Score = 47.4 bits (111), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 36/128 (28%), Positives = 62/128 (48%), Gaps = 16/128 (12%)
Query: 68  VSKGQAPPSFTLKDQEGRNVSLSKFKGKPVVVYFYPADETPGCTKQACAFRDSYEKFKKA 127
           V  G   P+F L    G N SL++++GK V+V F+ A   P C  +  +     + F K 
Sbjct: 15  VRTGALAPNFKLPTLSGENKSLAQYRGKIVLVNFW-ASWCPYCRDEXPSXDRLVKSFPKG 73
Query: 128 GAEVIGISGDDSSSHKAFAKKYR---LPYTLLSDEGNKVRKEWGVPADFFGSLPGRQTYI 184
              V+ +     +  K F +KYR   + +  LSD   +V++ +G        LP   T+I
Sbjct: 74  DLVVLAV-----NVEKRFPEKYRRAPVSFNFLSDATGQVQQRYGA-----NRLP--DTFI 121
Query: 185 LDKNGVVQ 192
           +D+ G+++
Sbjct: 122 VDRKGIIR 129

>pdb|2H19|A Chain A, Crystal Structure Of Resa Cys77ala Variant Length = 143

Iteration: 1
 Score = 46.6 bits (109), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 35/139 (25%), Positives = 63/139 (45%), Gaps = 7/139 (5%)
Query: 69  SKGQAPPSFTLKDQEGRNVSLSKFKGKPVVVYFYPADETPGCTKQACAFRDSYEKFKKAG 128
           S+G   P+F L+D  G+ + LS  KGK V + F+     P   K+     + Y+ FK  G
Sbjct: 1   SEGSDAPNFVLEDTNGKRIELSDLKGKGVFLNFWGTWCEP-AKKEFPYMANQYKHFKSQG 59
Query: 129 AEVIGIS-GDDSSSHKAFAKKYRLPYTLLSDEGNKVRKEWGV---PADFFGSLPGRQTYI 184
            E++ ++ G+   +   F K Y + + ++ D   +V   + V   P  F  +  G+   +
Sbjct: 60  VEIVAVNVGESKIAVHNFMKSYGVNFPVVLDTDRQVLDAYDVSPLPTTFLINPEGKVVKV 119
Query: 185 LDKNGVVQLI--YNNQFQP 201
           +       +I  Y N  +P
Sbjct: 120 VTGTMTESMIHDYMNLIKP 138

>pdb|3C73|A Chain A, Structure Of Cehc Variant Resa Length = 140

Iteration: 1
 Score = 46.6 bits (109), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 33/133 (24%), Positives = 60/133 (45%), Gaps = 7/133 (5%)
Query: 75  PSFTLKDQEGRNVSLSKFKGKPVVVYFYPADETPGCTKQACAFRDSYEKFKKAGAEVIGI 134
           P+F L+D  G+ + LS  KGK V + F+       C K+     + Y+ FK  G E++ +
Sbjct: 4   PNFVLEDTNGKRIELSDLKGKGVFLNFW-GTWCEHCKKEFPYMANQYKHFKSQGVEIVAV 62
Query: 135 S-GDDSSSHKAFAKKYRLPYTLLSDEGNKVRKEWGV---PADFFGSLPGRQTYILDKNGV 190
           + G+   +   F K Y + + ++ D   +V   + V   P  F  +  G+   ++     
Sbjct: 63  NVGESKIAVHNFMKSYGVNFPVVLDTDRQVLDAYDVSPLPTTFLINPEGKVVKVVTGTMT 122
Query: 191 VQLI--YNNQFQP 201
             +I  Y N  +P
Sbjct: 123 ESMIHDYMNLIKP 135

>pdb|1N8J|A Chain A, Crystal Structure Of Ahpc With Active Site Cysteine Mutated To Serine (C46s) Length = 186

Iteration: 1
 Score = 46.6 bits (109), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 32/120 (26%), Positives = 57/120 (47%), Gaps = 5/120 (4%)
Query: 79  LKDQEGRNVSLSKFKGKPVVVYFYPADETPGCTKQACAFRDSYEKFKKAGAEVIGISGDD 138
            K+ E   V+    +G+  V +FYPAD T     +     D YE+ +K G +V  +S D 
Sbjct: 15  FKNGEFIEVTEKDTEGRWSVFFFYPADFTFVSPTELGDVADHYEELQKLGVDVYSVSTDT 74
Query: 139 SSSHKAFAKK----YRLPYTLLSDEGNKVRKEWGVPADFFGSLPGRQTYILDKNGVVQLI 194
             +HKA+        ++ Y ++ D    + + +    +  G L  R T+++D  G++Q I
Sbjct: 75  HFTHKAWHSSSETIAKIKYAMIGDPTGALTRNFDNMREDEG-LADRATFVVDPQGIIQAI 133

>pdb|1ZOF|A Chain A, Crystal Structure Of Alkyl Hydroperoxide-Reductase (Ahpc) From Helicobacter Pylori Length = 198

Iteration: 1
 Score = 45.8 bits (107), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 35/148 (23%), Positives = 69/148 (46%), Gaps = 10/148 (6%)
Query: 75  PSFTLKDQEGRNVSLSKFKGKP-VVVYFYPADETPGCTKQACAFRDSYEKFKKAGAEVIG 133
           P+    ++   +  LSK  GK  V+++F+P D T  C  +  AF    + F + G  VIG
Sbjct: 13  PAVLGNNEVDEHFELSKNLGKNGVILFFWPKDFTFVCPTEIIAFDKRVKDFHEKGFNVIG 72
Query: 134 ISGDDSSSHKAFAKK-------YRLPYTLLSDEGNKVRKEWGVPADFFGSLPGRQTYILD 186
           +S D    H A+           ++ + +++D    + +++ V   F  ++  R  +++D
Sbjct: 73  VSIDSEQVHFAWKNTPVEKGGIGQVSFPMVADITKSISRDYDVL--FEEAIALRGAFLID 130
Query: 187 KNGVVQLIYNNQFQPEKHIDETLKFLQS 214
           KN  V+    N     ++ DE L+ + +
Sbjct: 131 KNMKVRHAVINDLPLGRNADEMLRMVDA 158

>pdb|2L5O|A Chain A, Solution Structure Of A Putative Thioredoxin From Neisseria Meningitidis Length = 153

Iteration: 1
 Score = 44.3 bits (103), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 29/114 (25%), Positives = 56/114 (49%), Gaps = 5/114 (4%)
Query: 75  PSFTLKDQEGRNVSLSKFKGKPVVV-YFYPADETPGCTKQACAFRDSYEKFKKAGAEVIG 133
           P+F+L D  G+ VS +  +GK  ++ +++P+   PGC  +      +   +K    +V+ 
Sbjct: 9   PAFSLPDLHGKTVSNADLQGKVTLINFWFPS--CPGCVSEMPKIIKTANDYKNKNFQVLA 66
Query: 134 ISG--DDSSSHKAFAKKYRLPYTLLSDEGNKVRKEWGVPADFFGSLPGRQTYIL 185
           ++   D   S + + K Y LP+T++ D    V + +G        L G++  IL
Sbjct: 67  VAQPIDPIESVRQYVKDYGLPFTVMYDADKAVGQAFGTQVYPTSVLIGKKGEIL 120

>pdb|2LRN|A Chain A, Solution Structure Of A Thiol:disulfide Interchange Protein From Bacteroides Sp. Length = 152

Iteration: 1
 Score = 42.0 bits (97), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 25/70 (35%), Positives = 37/70 (52%), Gaps = 1/70 (1%)
Query: 68  VSKGQAPPSFTLKDQEGRNVSLSKFKGKPVVVYFYPADETPGCTKQACAFRDSYEKFKKA 127
           ++ G   P+ T  D +G +VSL+ FKGK V+V F+ A     C K+      +Y  FK  
Sbjct: 3   LATGSVAPAITGIDLKGNSVSLNDFKGKYVLVDFWFAG-CSWCRKETPYLLKTYNAFKDK 61
Query: 128 GAEVIGISGD 137
           G  + G+S D
Sbjct: 62  GFTIYGVSTD 71

>pdb|2VL9|A Chain A, Oxidized Form Of Human Peroxiredoxin 5 Length = 173

Iteration: 1
 Score = 40.4 bits (93), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 40/146 (27%), Positives = 69/146 (47%), Gaps = 21/146 (14%)
Query: 65  SAKVSKGQAPPSFTLKDQE-GRNVSLSK-FKGKPVVVYFYPADETPGCTKQAC-AFRDSY 121
           SA +  G A P+  + + E G  V+L++ FKGK  V++  P   TPGC+K     F +  
Sbjct: 12  SAPIKVGDAIPAVEVFEGEPGNKVNLAELFKGKKGVLFGVPGAFTPGCSKTHLPGFVEQA 71
Query: 122 EKFKKAGAEVIG--------ISGDDSSSHKAFAKKYRLPYTLLSDEGNKVRKEWGVPAD- 172
           E  K  G +V+         ++G+   +HKA  K       LL+D      KE  +  D 
Sbjct: 72  EALKAKGVQVVASLSVNDAFVTGEWGRAHKAEGK-----VRLLADPTGAFGKETDLLLDD 126
Query: 173 ----FFGSLPGRQTYILDKNGVVQLI 194
                FG+   ++  ++ ++G+V+ +
Sbjct: 127 SLVSIFGNRRLKRFSMVVQDGIVKAL 152

>pdb|2VL2|A Chain A, Oxidized And Reduced Forms Of Human Peroxiredoxin 5 Length = 172

Iteration: 1
 Score = 40.4 bits (93), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 40/146 (27%), Positives = 69/146 (47%), Gaps = 21/146 (14%)
Query: 65  SAKVSKGQAPPSFTLKDQE-GRNVSLSK-FKGKPVVVYFYPADETPGCTKQAC-AFRDSY 121
           SA +  G A P+  + + E G  V+L++ FKGK  V++  P   TPGC+K     F +  
Sbjct: 11  SAPIKVGDAIPAVEVFEGEPGNKVNLAELFKGKKGVLFGVPGAFTPGCSKTHLPGFVEQA 70
Query: 122 EKFKKAGAEVIG--------ISGDDSSSHKAFAKKYRLPYTLLSDEGNKVRKEWGVPAD- 172
           E  K  G +V+         ++G+   +HKA  K       LL+D      KE  +  D 
Sbjct: 71  EALKAKGVQVVACLSVNDAFVTGEWGRAHKAEGK-----VRLLADPTGAFGKETDLLLDD 125
Query: 173 ----FFGSLPGRQTYILDKNGVVQLI 194
                FG+   ++  ++ ++G+V+ +
Sbjct: 126 SLVSIFGNRRLKRFSMVVQDGIVKAL 151

>pdb|3MNG|A Chain A, Wild Type Human Prxv With Dtt Bound As A Competitive Inhibitor Length = 173

Iteration: 1
 Score = 40.0 bits (92), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 40/146 (27%), Positives = 69/146 (47%), Gaps = 21/146 (14%)
Query: 65  SAKVSKGQAPPSFTLKDQE-GRNVSLSK-FKGKPVVVYFYPADETPGCTKQAC-AFRDSY 121
           SA +  G A P+  + + E G  V+L++ FKGK  V++  P   TPGC+K     F +  
Sbjct: 12  SAPIKVGDAIPAVEVFEGEPGNKVNLAELFKGKKGVLFGVPGAFTPGCSKTHLPGFVEQA 71
Query: 122 EKFKKAGAEVIG--------ISGDDSSSHKAFAKKYRLPYTLLSDEGNKVRKEWGVPAD- 172
           E  K  G +V+         ++G+   +HKA  K       LL+D      KE  +  D 
Sbjct: 72  EALKAKGVQVVACLSVNDAFVTGEWGRAHKAEGK-----VRLLADPTGAFGKETDLLLDD 126
Query: 173 ----FFGSLPGRQTYILDKNGVVQLI 194
                FG+   ++  ++ ++G+V+ +
Sbjct: 127 SLVSIFGNRRLKRFSMVVQDGIVKAL 152

>pdb|1OC3|A Chain A, Human Peroxiredoxin 5 Length = 172

Iteration: 1
 Score = 40.0 bits (92), Expect = 9e-04,   Method: Compositional matrix adjust.
 Identities = 40/146 (27%), Positives = 69/146 (47%), Gaps = 21/146 (14%)
Query: 65  SAKVSKGQAPPSFTLKDQE-GRNVSLSK-FKGKPVVVYFYPADETPGCTKQAC-AFRDSY 121
           SA +  G A P+  + + E G  V+L++ FKGK  V++  P   TPGC+K     F +  
Sbjct: 11  SAPIKVGDAIPAVEVFEGEPGNKVNLAELFKGKKGVLFGVPGAFTPGCSKTHLPGFVEQA 70
Query: 122 EKFKKAGAEVIG--------ISGDDSSSHKAFAKKYRLPYTLLSDEGNKVRKEWGVPAD- 172
           E  K  G +V+         ++G+   +HKA  K       LL+D      KE  +  D 
Sbjct: 71  EALKAKGVQVVACLSVNDAFVTGEWGRAHKAEGK-----VRLLADPTGAFGKETDLLLDD 125
Query: 173 ----FFGSLPGRQTYILDKNGVVQLI 194
                FG+   ++  ++ ++G+V+ +
Sbjct: 126 SLVSIFGNRRLKRFSMVVQDGIVKAL 151

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	215
3drn_A	161	Peroxiredoxin, bacterioferritin comigratory prote	9e-71
2ywn_A	157	Peroxiredoxin-like protein; redox protein, structu	1e-68
2cx4_A	164	Bacterioferritin comigratory protein; oxidoreducta	8e-67
2a4v_A	159	Peroxiredoxin DOT5; yeast nuclear thiol peroxidase	5e-58
1xvw_A	160	Hypothetical protein RV2238C/MT2298; thioredoxin f	1e-56
3gkn_A	163	Bacterioferritin comigratory protein; BCP, PRX, at	9e-54
3ixr_A	179	Bacterioferritin comigratory protein; alpha beta p	3e-52
2yzh_A	171	Probable thiol peroxidase; redox protein, antioxid	1e-34
1xvq_A	175	Thiol peroxidase; thioredoxin fold, structural gen	3e-34
2jsy_A	167	Probable thiol peroxidase; solution structure, ant	2e-30
3zrd_A	200	Thiol peroxidase; oxidoreductase, 2Cys peroxiredox	5e-30
1q98_A	165	Thiol peroxidase, TPX; structural genomics, NYSGXR	9e-30
3p7x_A	166	Probable thiol peroxidase; thioredoxin fold, oxido	2e-29
1psq_A	163	Probable thiol peroxidase; structural genomics, NY	2e-28
2f9s_A	151	Thiol-disulfide oxidoreductase RESA; thioredoxin-l	3e-27
2ls5_A	159	Uncharacterized protein; structural genomics, unkn	3e-26
1e2y_A	188	TRYP, tryparedoxin peroxidase; 2-Cys peroxiredoxin	1e-25
3qpm_A	240	Peroxiredoxin; oxidoreductase, thioredoxin fold, p	1e-25
2l5o_A	153	Putative thioredoxin; structural genomics, unknown	1e-25
1n8j_A	186	AHPC, alkyl hydroperoxide reductase C22 protein; p	2e-25
3tjj_A	254	Peroxiredoxin-4; thioredoxin fold, sulfenylation,	3e-25
3ztl_A	222	Thioredoxin peroxidase; oxidoreductase, reductase,	3e-25
2i81_A	213	2-Cys peroxiredoxin; structural genomics consortiu	4e-25
1uul_A	202	Tryparedoxin peroxidase homologue; peroxiredoxin,	5e-25
1we0_A	187	Alkyl hydroperoxide reductase C; peroxiredoxin, AH	6e-25
3gl3_A	152	Putative thiol:disulfide interchange protein DSBE;	6e-25
2pn8_A	211	Peroxiredoxin-4; thioredoxin, oxidoreductase, stru	6e-25
2bmx_A	195	Alkyl hydroperoxidase C; peroxiredoxin, antioxidan	9e-25
3hcz_A	148	Possible thiol-disulfide isomerase; APC61559.2, cy	1e-24
1zye_A	220	Thioredoxin-dependent peroxide reductase; catenane	2e-24
1qmv_A	197	Human thioredoxin peroxidase-B; peroxiredoxin, sul	2e-24
3or5_A	165	Thiol:disulfide interchange protein, thioredoxin p	2e-24
1zof_A	198	Alkyl hydroperoxide-reductase; decamer, toroide-sh	2e-24
3sbc_A	216	Peroxiredoxin TSA1; alpha-beta fold, peroxidase, c	2e-24
2h01_A	192	2-Cys peroxiredoxin; thioredoxin peroxidase, struc	3e-24
1lu4_A	136	Soluble secreted antigen MPT53; thioredoxin-like f	5e-24
3keb_A	224	Probable thiol peroxidase; structural genomics, AP	9e-24
2c0d_A	221	Thioredoxin peroxidase 2; peroxiredoxin, 2-Cys, th	2e-23
3raz_A	151	Thioredoxin-related protein; structural genomics,	7e-23
3hdc_A	158	Thioredoxin family protein; ATCC53774, DSM 7210, ,	1e-22
2lrt_A	152	Uncharacterized protein; structural genomics, thio	2e-22
3erw_A	145	Sporulation thiol-disulfide oxidoreductase A; thio	4e-22
3kcm_A	154	Thioredoxin family protein; SGX, thioredoxin prote	5e-22
2lrn_A	152	Thiol:disulfide interchange protein; structural ge	2e-21
3ewl_A	142	Uncharacterized conserved protein BF1870; alpha-be	1e-20
2v2g_A	233	Peroxiredoxin 6; oxidoreductase, antioxidant enzym	1e-20
3fkf_A	148	Thiol-disulfide oxidoreductase; structural genomic	1e-20
2lja_A	152	Putative thiol-disulfide oxidoreductase; structura	3e-20
3eur_A	142	Uncharacterized protein; PSI2,MCSG, conserved prot	4e-20
3a2v_A	249	Probable peroxiredoxin; thioredoxin peroxidase, hy	4e-20
2hyx_A	352	Protein DIPZ; thioredoxin fold, jelly-roll, struct	4e-20
3ha9_A	165	Uncharacterized thioredoxin-like protein; PSI, MCS	5e-20
3fw2_A	150	Thiol-disulfide oxidoreductase; structural genomic	7e-20
1prx_A	224	HORF6; peroxiredoxin, hydrogen peroxide, redox reg	3e-19
1xcc_A	220	1-Cys peroxiredoxin; unknown function, structural	3e-19
1zzo_A	136	RV1677; thioredoxin fold, structural genomics, PSI	4e-19
2b5x_A	148	YKUV protein, TRXY; thioredoxin-like, oxidoreducta	7e-19
3eyt_A	158	Uncharacterized protein SPOA0173; thioredoxin-like	8e-19
2h30_A	164	Thioredoxin, peptide methionine sulfoxide reductas	2e-18
3lwa_A	183	Secreted thiol-disulfide isomerase; thioredoxin, P	7e-18
4evm_A	138	Thioredoxin family protein; structural genomics, n	1e-17
3lor_A	160	Thiol-disulfide isomerase and thioredoxins; PSI, M	1e-17
4fo5_A	143	Thioredoxin-like protein; AHPC/TSA family protein,	2e-17
1jfu_A	186	Thiol:disulfide interchange protein TLPA; thioredo	5e-16
3ia1_A	154	THIO-disulfide isomerase/thioredoxin; oxidoreducta	1e-15
1o8x_A	146	Tryparedoxin, TRYX, TXNI; tryparedoxin-I, synchrot	7e-15
1o73_A	144	Tryparedoxin; electron transport, trypanosomatid,	2e-14
2lus_A	143	Thioredoxion; CR-Trp16, oxidoreductase; NMR {Carci	4e-14
1i5g_A	144	Tryparedoxin II; electron transport; HET: TS5; 1.4	2e-11
3s9f_A	165	Tryparedoxin; thioredoxin fold, disulfide reductas	4e-11
2cvb_A	188	Probable thiol-disulfide isomerase/thioredoxin; re	1e-09
3u5r_E	218	Uncharacterized protein; structural genomics, PSI-	3e-08
2ywi_A	196	Hypothetical conserved protein; uncharacterized co	8e-08
3me7_A	170	Putative uncharacterized protein; electron transfe	1e-07
3kh7_A	176	Thiol:disulfide interchange protein DSBE; TRX-like	8e-07
2xhf_A	171	Peroxiredoxin 5; oxidoreductase, antioxidant enzym	2e-06
1xzo_A	174	BSSCO, hypothetical protein YPMQ; thioredoxin-like	6e-06
2b7k_A	200	SCO1 protein; metallochaperone, cytochrome C oxida	4e-05
2ggt_A	164	SCO1 protein homolog, mitochondrial; copper chaper	5e-05
2rli_A	171	SCO2 protein homolog, mitochondrial; copper protei	8e-05
2b1k_A	168	Thiol:disulfide interchange protein DSBE; C-termin	2e-04
1kng_A	156	Thiol:disulfide interchange protein CYCY; thioredo	5e-04
2k6v_A	172	Putative cytochrome C oxidase assembly protein; th	6e-04

>3drn_A Peroxiredoxin, bacterioferritin comigratory prote homolog; bacterioferritin comigratory protein, oxidore; HET: CIT; 2.15A {Sulfolobus solfataricus} Length = 161

 Score =  212 bits (541), Expect = 9e-71
 Identities = 63/148 (42%), Positives = 92/148 (62%), Gaps = 4/148 (2%)

Query: 68  VSKGQAPPSFTLKDQEGRNVSLSKFKGK-PVVVYFYPADETPGCTKQACAFRDSYEKFKK 126
           V  G   P F      G  +SLS + GK  +V+YFYP D+TPG T++A AFRD+++  K 
Sbjct: 2   VKVGDKAPLFEGIADNGEKISLSDYIGKHNIVLYFYPKDDTPGSTREASAFRDNWDLLKD 61

Query: 127 AGAEVIGISGDDSSSHKAFAKKYRLPYTLLSDEGNKVRKEWGVPADFFGSLPGRQTYILD 186
               VIG+S DD +SHK F +KY+LP+ L+SD   K+R+ +G    F    P R T+++D
Sbjct: 62  YDVVVIGVSSDDINSHKRFKEKYKLPFILVSDPDKKIRELYGAKG-FIL--PARITFVID 118

Query: 187 KNGVVQLIYNNQFQPEKHIDETLKFLQS 214
           K G+++ IYN+Q  P  H++E LK L+ 
Sbjct: 119 KKGIIRHIYNSQMNPANHVNEALKALKQ 146

>2ywn_A Peroxiredoxin-like protein; redox protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.60A {Sulfolobus tokodaii} PDB: 3hjp_A Length = 157

 Score =  206 bits (526), Expect = 1e-68
 Identities = 62/153 (40%), Positives = 87/153 (56%), Gaps = 7/153 (4%)

Query: 68  VSKGQAPPSFTLKDQEGRNVSLSKFKGKPVVVYFYPADETPGCTKQACAFRDSYEKFKKA 127
           V  G+  P F L D E + V LS  KGK VV+ FYPA  T  CTK+ C FRDS  KF + 
Sbjct: 4   VEIGELAPDFELPDTELKKVKLSALKGKVVVLAFYPAAFTQVCTKEMCTFRDSMAKFNQV 63

Query: 128 GAEVIGISGDDSSSHKAFAKKYRLPYTLLSDEGNKVRKEWGVPADFFGSLPG-----RQT 182
            A V+GIS D   S+KAF +  +L +T+LSD   +V K++ V  + F +LPG     R  
Sbjct: 64  NAVVLGISVDPPFSNKAFKEHNKLNFTILSDYNREVVKKYNVAWE-FPALPGYVLAKRAV 122

Query: 183 YILDKNGVVQLIY-NNQFQPEKHIDETLKFLQS 214
           +++DK G V+  + ++    E   DE  K ++S
Sbjct: 123 FVIDKEGKVRYKWVSDDPTKEPPYDEIEKVVKS 155

>2cx4_A Bacterioferritin comigratory protein; oxidoreductase, antioxidant enzyme, reactive oxygen species, thioredoxin fold, structural genomics; 2.30A {Aeropyrum pernix} SCOP: c.47.1.10 PDB: 2cx3_A Length = 164

 Score =  202 bits (515), Expect = 8e-67
 Identities = 50/156 (32%), Positives = 75/156 (48%), Gaps = 6/156 (3%)

Query: 65  SAKVSKGQAPPSFTLKDQEGRNVSLSKF--KGKPVVVYFYPADETPGCTKQACAFRDSYE 122
              V  G+  P FTL +Q+   V+L +   +G+P V+ F+PA  +P CTK+ C FRD   
Sbjct: 2   KGLVELGEKAPDFTLPNQDFEPVNLYEVLKRGRPAVLIFFPAAFSPVCTKELCTFRDKMA 61

Query: 123 KFKKAGAEVIGISGDDSSSHKAFAKKYRLPYTLLSDEGNKVRKEWGVPADFFGSL---PG 179
           + +KA AEV+ IS D     K F  + RL + LLSD   +V K + V  +    L     
Sbjct: 62  QLEKANAEVLAISVDSPWCLKKFKDENRLAFNLLSDYNREVIKLYNVYHEDLKGLKMVAK 121

Query: 180 RQTYILDKNGVVQLIYNN-QFQPEKHIDETLKFLQS 214
           R  +I+  +G V   +       E   DE ++    
Sbjct: 122 RAVFIVKPDGTVAYKWVTDNPLNEPDYDEVVREANK 157

>2a4v_A Peroxiredoxin DOT5; yeast nuclear thiol peroxidase, atypical 2-Cys peroxiredoxin, oxidoreductase; 1.80A {Saccharomyces cerevisiae} SCOP: c.47.1.10 Length = 159

 Score =  179 bits (456), Expect = 5e-58
 Identities = 44/158 (27%), Positives = 68/158 (43%), Gaps = 8/158 (5%)

Query: 62  TSISAKVSKGQAPPSFTLKDQEGRNVSLSKF--KGKPVVVYFYPADETPGCTKQACAFRD 119
           +S   ++  G   P  +L +++  ++SL K     + VV + YP   TPG T+QA  FRD
Sbjct: 1   SSDVNELEIGDPIPDLSLLNEDNDSISLKKITENNRVVVFFVYPRASTPGSTRQASGFRD 60

Query: 120 SYEKFKKAGAEVIGISGDDSSSHKAFAKKYRLPYTLLSDEGNKVRKEWGVPA-DFFGSLP 178
           +Y++ K+  A V G+S D  +S K F  K  LPY LLSD   +     G       G   
Sbjct: 61  NYQELKEYAA-VFGLSADSVTSQKKFQSKQNLPYHLLSDPKREFIGLLGAKKTPLSG--S 117

Query: 179 GRQTYILDKNGVVQLIYN--NQFQPEKHIDETLKFLQS 214
            R  +I     +         +        E L+  + 
Sbjct: 118 IRSHFIFVDGKLKFKRVKISPEVSVNDAKKEVLEVAEK 155

>1xvw_A Hypothetical protein RV2238C/MT2298; thioredoxin fold, oxidized cystein sulfenic acid, structural genomics, PSI; 1.90A {Mycobacterium tuberculosis} SCOP: c.47.1.10 PDB: 1xxu_A Length = 160

 Score =  176 bits (448), Expect = 1e-56
 Identities = 39/153 (25%), Positives = 72/153 (47%), Gaps = 4/153 (2%)

Query: 65  SAKVSKGQAPPSFTLKDQEGRNVSLSKFKG-KPVVVYFYPADETPGCTKQACAFRDSYEK 123
           S  ++ G   P FTL+DQ  + V+L  ++G K V++ F+P   T  C  +    RD   +
Sbjct: 6   SHMLNVGATAPDFTLRDQNQQLVTLRGYRGAKNVLLVFFPLAFTGICQGELDQLRDHLPE 65

Query: 124 FKKAGAEVIGISGDDSSSHKAFAKKYRLPYTLLSD--EGNKVRKEWGVPADFFGSLPGRQ 181
           F+   +  + IS     +HK +A +    + LLSD      V + +GV  +  G +  R 
Sbjct: 66  FENDDSAALAISVGPPPTHKIWATQSGFTFPLLSDFWPHGAVSQAYGVFNEQAG-IANRG 124

Query: 182 TYILDKNGVVQLIYNNQFQPEKHIDETLKFLQS 214
           T+++D++G+++     Q    +        L +
Sbjct: 125 TFVVDRSGIIRFAEMKQPGEVRDQRLWTDALAA 157

>3gkn_A Bacterioferritin comigratory protein; BCP, PRX, atypical 2-Cys, oxidoreduc; HET: BIH; 1.47A {Xanthomonas campestris PV} PDB: 3gkk_A 3gkm_A Length = 163

 Score =  168 bits (428), Expect = 9e-54
 Identities = 44/155 (28%), Positives = 68/155 (43%), Gaps = 6/155 (3%)

Query: 65  SAKVSKGQAPPSFTLKDQEGRNVSLSKFKGKPVVVYFYPADETPGCTKQACAFRDSYEKF 124
            A +    A     L    G   +L    G  +V+YFYP D TPG T +   F     +F
Sbjct: 6   DAVLELPAATFDLPLSLSGGTQTTLRAHAGHWLVIYFYPKDSTPGATTEGLDFNALLPEF 65

Query: 125 KKAGAEVIGISGDDSSSHKAFAKKYRLPYTLLSDEGNKVRKEWGV--PADFFG-SLPG-- 179
            KAGA+++G+S D   SH  F  K    + L+SD    + + + V    + +G  + G  
Sbjct: 66  DKAGAKILGVSRDSVKSHDNFCAKQGFAFPLVSDGDEALCRAFDVIKEKNMYGKQVLGIE 125

Query: 180 RQTYILDKNGVVQLIYNNQFQPEKHIDETLKFLQS 214
           R T++L   G V   +    +   H D  L  L++
Sbjct: 126 RSTFLLSPEGQVVQAWRK-VKVAGHADAVLAALKA 159

>3ixr_A Bacterioferritin comigratory protein; alpha beta protein, oxidoreductase; 1.60A {Xylella fastidiosa} Length = 179

 Score =  165 bits (420), Expect = 3e-52
 Identities = 36/165 (21%), Positives = 70/165 (42%), Gaps = 6/165 (3%)

Query: 55  PSSTSFKTSISAKVSKGQAPPSFTLKDQEGRNVSLSKFKGKPVVVYFYPADETPGCTKQA 114
                  + ++   +   +  +  L        +LS +  + +V+YFYP D TPG + + 
Sbjct: 12  SGLVPRGSHMNIGDTLNHSLLNHPLMLSGSTCKTLSDYTNQWLVLYFYPKDNTPGSSTEG 71

Query: 115 CAFRDSYEKFKKAGAEVIGISGDDSSSHKAFAKKYRLPYTLLSDEGNKVRKEWGV--PAD 172
             F     +F++  A V+G+S D   SH +F  K    + L+SD    + K + V     
Sbjct: 72  LEFNLLLPQFEQINATVLGVSRDSVKSHDSFCAKQGFTFPLVSDSDAILCKAFDVIKEKT 131

Query: 173 FFG-SLPG--RQTYILDKNGVVQLIYNNQFQPEKHIDETLKFLQS 214
            +G  + G  R T+++     +   +    +   H +E L  L++
Sbjct: 132 MYGRQVIGIERSTFLIGPTHRIVEAWRQ-VKVPGHAEEVLNKLKA 175

>2yzh_A Probable thiol peroxidase; redox protein, antioxidant, oxidoreductase, STRU genomics, NPPSFA; 1.85A {Aquifex aeolicus} Length = 171

 Score =  120 bits (302), Expect = 1e-34
 Identities = 32/152 (21%), Positives = 64/152 (42%), Gaps = 8/152 (5%)

Query: 68  VSKGQAPPSFTLKDQEGRNVSLSKFKGKPVVVYFYPADETPGCTKQACAFRDSYEKFKKA 127
           +  G   P   +  ++ +   +   K    V+   P+ +TP C  +   F +     +  
Sbjct: 21  LKVGDRAPEAVVVTKDLQEKIVGGAKDVVQVIITVPSLDTPVCETETKKFNEIMAGME-- 78

Query: 128 GAEVIGISGDDSSSHKAFAKKYRLP-YTLLSDEGNKVRKEWGVPADFFGSLPG---RQTY 183
           G +V  +S D   + K F + + +   T+ SD   +  +++GV     G+L G   R  +
Sbjct: 79  GVDVTVVSMDLPFAQKRFCESFNIQNVTVASDFRYRDMEKYGVLIG-EGALKGILARAVF 137

Query: 184 ILDKNGVVQLI-YNNQFQPEKHIDETLKFLQS 214
           I+DK G V  +    +   E + DE +  ++ 
Sbjct: 138 IIDKEGKVAYVQLVPEITEEPNYDEVVNKVKE 169

>1xvq_A Thiol peroxidase; thioredoxin fold, structural genomics, PSI, protein structur initiative, TB structural genomics consortium, TBSGC; 1.75A {Mycobacterium tuberculosis} SCOP: c.47.1.10 PDB: 1y25_A Length = 175

 Score =  119 bits (300), Expect = 3e-34
 Identities = 31/151 (20%), Positives = 59/151 (39%), Gaps = 7/151 (4%)

Query: 68  VSKGQAPPSFTLKDQEGRNVSLSKFKGKPVVVYFYPADETPGCTKQACAFRDSYEKFKKA 127
            + G   P+FTL   +   +S  +F+GK V++  +P+ +TP C      F +   +   +
Sbjct: 18  PAVGSPAPAFTLTGGDLGVISSDQFRGKSVLLNIFPSVDTPVCATSVRTFDE---RAAAS 74

Query: 128 GAEVIGISGDDSSSHKAFAKKYRLP-YTLLSDEGNKVRKEWGVPADFFGSLPG--RQTYI 184
           GA V+ +S D   + K F            S   +   +++GV            R   +
Sbjct: 75  GATVLCVSKDLPFAQKRFCGAEGTENVMPASAFRDSFGEDYGVTIADGPMAGLLARAIVV 134

Query: 185 LDKNGVVQLI-YNNQFQPEKHIDETLKFLQS 214
           +  +G V       +   E + +  L  L +
Sbjct: 135 IGADGNVAYTELVPEIAQEPNYEAALAALGA 165

>2jsy_A Probable thiol peroxidase; solution structure, antioxidant, oxidoreductase; NMR {Bacillus subtilis} PDB: 2jsz_A Length = 167

 Score =  109 bits (274), Expect = 2e-30
 Identities = 32/127 (25%), Positives = 48/127 (37%), Gaps = 5/127 (3%)

Query: 68  VSKGQAPPSFTLKDQEGRNVSLSKFKGKPVVVYFYPADETPGCTKQACAFRDSYEKFKKA 127
           V  G   P FT+        SL+  KGK  ++   P+ +T  C  Q   F +   K    
Sbjct: 18  VKVGDQAPDFTVLTNSLEEKSLADMKGKVTIISVIPSIDTGVCDAQTRRFNEEAAKLG-- 75

Query: 128 GAEVIGISGDDSSSHKAFAKKYRLP-YTLLSDEGNK-VRKEWGVPADFFGSLPGRQTYIL 185
              V  IS D   +   +     +     LSD  +    + +GV       L  R  ++L
Sbjct: 76  DVNVYTISADLPFAQARWCGANGIDKVETLSDHRDMSFGEAFGVYIKELR-LLARSVFVL 134

Query: 186 DKNGVVQ 192
           D+NG V 
Sbjct: 135 DENGKVV 141

>3zrd_A Thiol peroxidase; oxidoreductase, 2Cys peroxiredoxin, thioredoxin-fold, ROS PR; 1.74A {Yersinia pseudotuberculosis} PDB: 2xpe_A 2xpd_A 3zre_A 2yjh_A 4af2_A 3hvs_A* 1qxh_A* 3i43_A* 3hvv_A 3hvx_A Length = 200

 Score =  109 bits (273), Expect = 5e-30
 Identities = 32/130 (24%), Positives = 49/130 (37%), Gaps = 8/130 (6%)

Query: 68  VSKGQAPPSFTLKDQEGRNVSLSKFKGKPVVVYFYPADETPGCTKQACAFRDSYEKFKKA 127
              G     FTL  ++  +V+LS F GK  V+  +P+ +T  C      F     + +  
Sbjct: 52  PQIGDKAKDFTLVAKDLSDVALSSFAGKRKVLNIFPSIDTGVCAASVRKFNQLAGELE-- 109

Query: 128 GAEVIGISGDDSSSHKAFAKKYRLPYTLLSDE--GNKVRKEWGVPADFFGSLPG---RQT 182
              V+ IS D   +   F     L   +      G   ++ +GV A   G L G   R  
Sbjct: 110 NTVVLCISSDLPFAQSRFCGAEGLSNVITLSTLRGADFKQAYGV-AITEGPLAGLTARAV 168

Query: 183 YILDKNGVVQ 192
            +LD    V 
Sbjct: 169 VVLDGQDNVI 178

>1q98_A Thiol peroxidase, TPX; structural genomics, NYSGXRC, PSI, protein structure initiative; 1.90A {Haemophilus influenzae} SCOP: c.47.1.10 Length = 165

 Score =  107 bits (269), Expect = 9e-30
 Identities = 27/129 (20%), Positives = 45/129 (34%), Gaps = 6/129 (4%)

Query: 68  VSKGQAPPSFTLKDQEGRNVSLSKFKGKPVVVYFYPADETPGCTKQACAFRDSYEKFKKA 127
              G+   +F L   +  +V+L+ F  K  V+  +P+ +T  C      F     K    
Sbjct: 17  PQVGEIVENFILVGNDLADVALNDFASKRKVLNIFPSIDTGVCATSVRKFNQQAAKLS-- 74

Query: 128 GAEVIGISGDDSSSHKAFAKKYRLPY-TLLSDEGNK-VRKEWGVPADFFGS--LPGRQTY 183
              V+ IS D   +   F     +     +S   N  +  + GV         L  R   
Sbjct: 75  NTIVLCISADLPFAQARFCGAEGIENAKTVSTFRNHALHSQLGVDIQTGPLAGLTSRAVI 134

Query: 184 ILDKNGVVQ 192
           +LD+   V 
Sbjct: 135 VLDEQNNVL 143

>3p7x_A Probable thiol peroxidase; thioredoxin fold, oxidoreductase; HET: PG4; 1.96A {Staphylococcus aureus} Length = 166

 Score =  106 bits (266), Expect = 2e-29
 Identities = 31/127 (24%), Positives = 54/127 (42%), Gaps = 6/127 (4%)

Query: 68  VSKGQAPPSFTLKDQEGRNVSLSKFKGKPVVVYFYPADETPGCTKQACAFRDSYEKFKKA 127
           +++G   P FT+ D +   V+L+ + GK  ++   P+ +T  C +Q   F        K 
Sbjct: 20  INEGDFAPDFTVLDNDLNQVTLADYAGKKKLISVVPSIDTGVCDQQTRKFNS---DASKE 76

Query: 128 GAEVIGISGDDSSSHKAFAKKYRLP-YTLLSDEGNK-VRKEWGVPADFFGSLPGRQTYIL 185
              V+ IS D   + K +     L     LSD  +    + +GV  +    L  R  ++L
Sbjct: 77  EGIVLTISADLPFAQKRWCASAGLDNVITLSDHRDLSFGENYGVVMEELR-LLARAVFVL 135

Query: 186 DKNGVVQ 192
           D +  V 
Sbjct: 136 DADNKVV 142

>1psq_A Probable thiol peroxidase; structural genomics, NYSGXRC, PSI, structure initiative, NEW YORK SGX research center for STRU genomics; 2.30A {Streptococcus pneumoniae} SCOP: c.47.1.10 Length = 163

 Score =  103 bits (260), Expect = 2e-28
 Identities = 26/127 (20%), Positives = 52/127 (40%), Gaps = 5/127 (3%)

Query: 68  VSKGQAPPSFTLKDQEGRNVSLSKFKGKPVVVYFYPADETPGCTKQACAFRDSYEKFKKA 127
           +  G     F+L   +    SL+ F GK  V+   P+ +T  C+ Q   F +        
Sbjct: 16  LQVGDKALDFSLTTTDLSKKSLADFDGKKKVLSVVPSIDTGICSTQTRRFNEELAGLD-- 73

Query: 128 GAEVIGISGDDSSSHKAFAKKYRLP-YTLLSDEGNK-VRKEWGVPADFFGSLPGRQTYIL 185
              V+ +S D   + K +     L    +LSD  +    +++ +  + +  L  R  ++L
Sbjct: 74  NTVVLTVSMDLPFAQKRWCGAEGLDNAIMLSDYFDHSFGRDYALLINEWH-LLARAVFVL 132

Query: 186 DKNGVVQ 192
           D +  ++
Sbjct: 133 DTDNTIR 139

>2f9s_A Thiol-disulfide oxidoreductase RESA; thioredoxin-like protein; HET: MSE; 1.40A {Bacillus subtilis} SCOP: c.47.1.10 PDB: 1st9_A 1su9_A 2h1d_A 2h1b_A 2h1a_A 2h19_A 2h1g_A 3c71_A 3c73_A Length = 151

 Score =  100 bits (251), Expect = 3e-27
 Identities = 35/150 (23%), Positives = 65/150 (43%), Gaps = 14/150 (9%)

Query: 69  SKGQAPPSFTLKDQEGRNVSLSKFKGKPVVVYFYPADET--PGCTKQACAFRDSYEKFKK 126
           S+G   P+F L+D  G+ + LS  KGK V + F+    T    C K+     + Y+ FK 
Sbjct: 1   SEGSDAPNFVLEDTNGKRIELSDLKGKGVFLNFW-G--TWCEPCKKEFPYMANQYKHFKS 57

Query: 127 AGAEVIGISGDDSSSH-KAFAKKYRLPYTLLSDEGNKVRKEWGVPADFFGSLPGRQTYIL 185
            G E++ ++  +S      F K Y + + ++ D   +V   + V       LP   T+++
Sbjct: 58  QGVEIVAVNVGESKIAVHNFMKSYGVNFPVVLDTDRQVLDAYDVSP-----LP--TTFLI 110

Query: 186 DKNGVVQLIYNNQFQPEKHIDETLKFLQSS 215
           +  G V  +          I + +  ++  
Sbjct: 111 NPEGKVVKVVTGTMTESM-IHDYMNLIKPG 139

>2ls5_A Uncharacterized protein; structural genomics, unknown function, thioredoxin-like, NEW structural genomics research consortium; NMR {Bacteroides thetaiotaomicron} Length = 159

 Score = 98.2 bits (245), Expect = 3e-26
 Identities = 38/158 (24%), Positives = 66/158 (41%), Gaps = 18/158 (11%)

Query: 63  SISAKVSKGQAPPSFTLKDQEGRNVSLSKFKGKPVVVYFYPADET--PGCTKQACAFRDS 120
           S+   V  G+  P FT+   +G+ V+LS  +GK V++ F  A  +    C K+       
Sbjct: 2   SLGYIVRIGEMAPDFTITLTDGKQVTLSSLRGKVVMLQFT-A--SWCGVCRKEMPFIEKD 58

Query: 121 YEKFKKAGA--EVIGISGDDSSSH-KAFAKKYRLPYTLLSDEGNKVRKEWGVPADFFGSL 177
                K  A   +IGI  D+      AFAK   + Y L  D G  +  ++ +       +
Sbjct: 59  IWLKHKDNADFALIGIDRDEPLEKVLAFAKSTGVTYPLGLDPGADIFAKYALRD---AGI 115

Query: 178 PGRQTYILDKNGVVQLIYNNQFQPE-----KHIDETLK 210
              +  ++D+ G +  +     + E     + I+E LK
Sbjct: 116 T--RNVLIDREGKIVKLTRLYNEEEFASLVQQINEMLK 151

>1e2y_A TRYP, tryparedoxin peroxidase; 2-Cys peroxiredoxin, oxidoreductase; 3.2A {Crithidia fasciculata} SCOP: c.47.1.10 Length = 188

 Score = 97.6 bits (244), Expect = 1e-25
 Identities = 44/163 (26%), Positives = 80/163 (49%), Gaps = 14/163 (8%)

Query: 62  TSISAKVSKGQAPPSFT----LKDQEGRNVSLSKFKGKPVVVYFYPADETPGCTKQACAF 117
           +  +AK++   AP  F     + +   + VSLS +KGK VV++FYP D T  C  +   F
Sbjct: 2   SCGAAKLNH-PAPE-FDDMALMPNGTFKKVSLSSYKGKYVVLFFYPMDFTFVCPTEIIQF 59

Query: 118 RDSYEKFKKAGAEVIGISGDDSSSHKAFAKKYR-------LPYTLLSDEGNKVRKEWGVP 170
            D  ++F +   EVI  S D   SH  +    R       +   +L+D+   + + +GV 
Sbjct: 60  SDDAKRFAEINTEVISCSCDSEYSHLQWTSVDRKKGGLGPMAIPMLADKTKAIARAYGVL 119

Query: 171 ADFFGSLPGRQTYILDKNGVVQLIYNNQFQPEKHIDETLKFLQ 213
            +  G +  R  +I+D NG ++ I  N     ++++E ++ ++
Sbjct: 120 DEDSG-VAYRGVFIIDPNGKLRQIIINDMPIGRNVEEVIRLVE 161

>3qpm_A Peroxiredoxin; oxidoreductase, thioredoxin fold, peroxidase; 1.90A {Larimichthys crocea} Length = 240

 Score = 98.5 bits (246), Expect = 1e-25
 Identities = 51/170 (30%), Positives = 83/170 (48%), Gaps = 13/170 (7%)

Query: 54  IPSSTSFKTSISAKVSKGQAPPSFTLK---DQEGRNVSLSKFKGKPVVVYFYPADETPGC 110
           +P S        AK+SK  AP  +      + E + + LS ++GK +V +FYP D T  C
Sbjct: 36  VPVSDHSLHLSKAKISK-PAPQ-WEGTAVINGEFKELKLSDYRGKYLVFFFYPLDFTFVC 93

Query: 111 TKQACAFRDSYEKFKKAGAEVIGISGDDSSSHKAFAKKYR-------LPYTLLSDEGNKV 163
             +  AF D   +F+    EV+  S D   +H A+    R       +   LLSD  +++
Sbjct: 94  PTEIIAFSDRVHEFRAINTEVVACSVDSQFTHLAWIITPRKQGGLGPMKIPLLSDLTHQI 153

Query: 164 RKEWGVPADFFGSLPGRQTYILDKNGVVQLIYNNQFQPEKHIDETLKFLQ 213
            K++GV  +  G    R  +I+D+ GV++ I  N     + +DETL+ +Q
Sbjct: 154 SKDYGVYLEDQG-HTLRGLFIIDEKGVLRQITMNDLPVGRSVDETLRLVQ 202

>2l5o_A Putative thioredoxin; structural genomics, unknown function, PSI-2, protein struct initiative; NMR {Neisseria meningitidis serogroup B} Length = 153

 Score = 96.2 bits (240), Expect = 1e-25
 Identities = 29/145 (20%), Positives = 59/145 (40%), Gaps = 13/145 (8%)

Query: 71  GQAPPSFTLKDQEGRNVSLSKFKGKPVVVYFYPADETPGCTKQACAFRDSYEKFKKAGAE 130
            +  P+F+L D  G+ VS +  +GK  ++ F+     PGC  +      +   +K    +
Sbjct: 5   SKTAPAFSLPDLHGKTVSNADLQGKVTLINFW-FPSCPGCVSEMPKIIKTANDYKNKNFQ 63

Query: 131 VIGISGDDSSSH--KAFAKKYRLPYTLLSDEGNKVRKEWGVPADFFGSLPGRQTYILDKN 188
           V+ ++         + + K Y LP+T++ D    V + +G         P   + ++ K 
Sbjct: 64  VLAVAQPIDPIESVRQYVKDYGLPFTVMYDADKAVGQAFGTQV-----YP--TSVLIGKK 116

Query: 189 GVVQLIYNNQFQP---EKHIDETLK 210
           G +   Y  +       + ID   +
Sbjct: 117 GEILKTYVGEPDFGKLYQEIDTAWR 141

>1n8j_A AHPC, alkyl hydroperoxide reductase C22 protein; peroxiredoxin, decamer, antioxidant, peroxidase, AHPF, oxidoreductase; 2.17A {Salmonella typhimurium} SCOP: c.47.1.10 PDB: 1yep_A 1yf1_A 1yf0_A 1yex_A 3emp_A Length = 186

 Score = 96.8 bits (242), Expect = 2e-25
 Identities = 34/150 (22%), Positives = 63/150 (42%), Gaps = 8/150 (5%)

Query: 71  GQAPPSFTL---KDQEGRNVSLSKFKGKPVVVYFYPADETPGCTKQACAFRDSYEKFKKA 127
                 F     K+ E   V+    +G+  V +FYPAD T     +     D YE+ +K 
Sbjct: 4   NTKIKPFKNQAFKNGEFIEVTEKDTEGRWSVFFFYPADFTFVSPTELGDVADHYEELQKL 63

Query: 128 GAEVIGISGDDSSSHKAFAKKYR----LPYTLLSDEGNKVRKEWGVPADFFGSLPGRQTY 183
           G +V  +S D   +HKA+         + Y ++ D    + + +    +  G L  R T+
Sbjct: 64  GVDVYSVSTDTHFTHKAWHSSSETIAKIKYAMIGDPTGALTRNFDNMREDEG-LADRATF 122

Query: 184 ILDKNGVVQLIYNNQFQPEKHIDETLKFLQ 213
           ++D  G++Q I        +   + L+ ++
Sbjct: 123 VVDPQGIIQAIEVTAEGIGRDASDLLRKIK 152

>3tjj_A Peroxiredoxin-4; thioredoxin fold, sulfenylation, endoplasmic reticulum, oxidoreductase; HET: CSO; 1.91A {Homo sapiens} PDB: 3tjk_A 3tjb_A 3tjf_A 3tjg_A 3tkq_A 3tkp_A 3tks_A 3tkr_A 3tks_C Length = 254

 Score = 98.2 bits (245), Expect = 3e-25
 Identities = 58/224 (25%), Positives = 98/224 (43%), Gaps = 19/224 (8%)

Query: 1   MAASLNLPKHTLPSFLPTQTPRTPPSQSLAIPSKSSSQSQFFGLRFSFSSNLPIPSSTSF 60
           M +S +   H+    +P  +  T        P     +  F+     +       S    
Sbjct: 1   MGSSHHHHHHSQDPLVPRGSWETEER-----PRTREEECHFYAGGQVYPGEASRVSVADH 55

Query: 61  KTSIS-AKVSKGQAPPSFTLK---DQEGRNVSLSKFKGKPVVVYFYPADETPGCTKQACA 116
              +S AK+SK  AP  +      D E + + L+ ++GK +V +FYP D T  C  +  A
Sbjct: 56  SLHLSKAKISK-PAPY-WEGTAVIDGEFKELKLTDYRGKYLVFFFYPLDFTFVCPTEIIA 113

Query: 117 FRDSYEKFKKAGAEVIGISGDDSSSHKAFAKKYR-------LPYTLLSDEGNKVRKEWGV 169
           F D  E+F+    EV+  S D   +H A+    R       +   LLSD  +++ K++GV
Sbjct: 114 FGDRLEEFRSINTEVVACSVDSQFTHLAWINTPRRQGGLGPIRIPLLSDLTHQISKDYGV 173

Query: 170 PADFFGSLPGRQTYILDKNGVVQLIYNNQFQPEKHIDETLKFLQ 213
             +  G    R  +I+D  G+++ I  N     + +DETL+ +Q
Sbjct: 174 YLEDSG-HTLRGLFIIDDKGILRQITLNDLPVGRSVDETLRLVQ 216

>3ztl_A Thioredoxin peroxidase; oxidoreductase, reductase, schistosomiasis, thioredoxin fold; 3.00A {Schistosoma mansoni} PDB: 3zvj_A 3zvj_D Length = 222

 Score = 97.4 bits (243), Expect = 3e-25
 Identities = 51/200 (25%), Positives = 85/200 (42%), Gaps = 18/200 (9%)

Query: 24  PPSQSLAIPSKSSSQSQFFGLRFSFSSNLPIPSSTSFKTSISAKVSKGQAPPSFTLK--- 80
                      S +  Q  G       +        + +++    ++  AP  F  +   
Sbjct: 3   GSHHHHHHGMASMTGGQQMGRDLYDDDD-----KDRWGSTMVLLPNR-PAPE-FKGQAVI 55

Query: 81  DQEGRNVSLSKFKGKPVVVYFYPADETPGCTKQACAFRDSYEKFKKAGAEVIGISGDDSS 140
           + E + + L  ++GK VV++FYPAD T  C  +  AF D  E+F     +VI  S D   
Sbjct: 56  NGEFKEICLKDYRGKYVVLFFYPADFTFVCPTEIIAFSDQVEEFNSRNCQVIACSTDSQY 115

Query: 141 SHKAFAKKYR-------LPYTLLSDEGNKVRKEWGVPADFFGSLPGRQTYILDKNGVVQL 193
           SH A+    R       +   LL+D   ++ K +GV  +  G    R  +I+D NG+++ 
Sbjct: 116 SHLAWDNLDRKSGGLGHMKIPLLADRKQEISKAYGVFDEEDG-NAFRGLFIIDPNGILRQ 174

Query: 194 IYNNQFQPEKHIDETLKFLQ 213
           I  N     + +DETL+ L 
Sbjct: 175 ITINDKPVGRSVDETLRLLD 194

>2i81_A 2-Cys peroxiredoxin; structural genomics consortium, SGC, oxidoreductase; 2.45A {Plasmodium vivax sai-1} PDB: 2h66_A Length = 213

 Score = 96.6 bits (241), Expect = 4e-25
 Identities = 49/171 (28%), Positives = 77/171 (45%), Gaps = 16/171 (9%)

Query: 55  PSSTSFKTSISAKVSKGQAPPSFT----LKDQEGRNVSLSKFKGKP-VVVYFYPADETPG 109
            SS          V K +AP  F       D     V+L++F GK  V++YFYP D T  
Sbjct: 10  HSSGLVPRGSPTYVGK-EAPF-FKAEAVFGDNSFGEVNLTQFIGKKYVLLYFYPLDFTFV 67

Query: 110 CTKQACAFRDSYEKFKKAGAEVIGISGDDSSSHKAFAKKYR-------LPYTLLSDEGNK 162
           C  +  A   + + F +   E++G S D   +H A+ K          + +TLLSD    
Sbjct: 68  CPSEIIALDKALDAFHERNVELLGCSVDSKYTHLAWKKTPLAKGGIGNIKHTLLSDITKS 127

Query: 163 VRKEWGVPADFFGSLPGRQTYILDKNGVVQLIYNNQFQPEKHIDETLKFLQ 213
           + K++ V  D   S+  R   ++D NG+VQ +  N     + +DE L+ + 
Sbjct: 128 ISKDYNVLFD--DSVSLRAFVLIDMNGIVQHLLVNNLAIGRSVDEILRIID 176

>1uul_A Tryparedoxin peroxidase homologue; peroxiredoxin, oxidoreductase; 2.8A {Trypanosoma cruzi} SCOP: c.47.1.10 Length = 202

 Score = 96.1 bits (240), Expect = 5e-25
 Identities = 42/163 (25%), Positives = 75/163 (46%), Gaps = 14/163 (8%)

Query: 62  TSISAKVSKGQAPPSFT----LKDQEGRNVSLSKFKGKPVVVYFYPADETPGCTKQACAF 117
           +   A+       P F     + +   + V+L+ +KGK +V++FYP D T  C  + C F
Sbjct: 2   SCGEAED--LHPAPDFNETALMPNGTFKKVALTSYKGKWLVLFFYPMDFTFVCPTEICQF 59

Query: 118 RDSYEKFKKAGAEVIGISGDDSSSHKAFAKKYR-------LPYTLLSDEGNKVRKEWGVP 170
            D  ++F   G EV+  S D   SH A+    R       +   +L+D+   + K +GV 
Sbjct: 60  SDRVKEFSDIGCEVLACSMDSEYSHLAWTSIERKRGGLGQMNIPILADKTKCIMKSYGVL 119

Query: 171 ADFFGSLPGRQTYILDKNGVVQLIYNNQFQPEKHIDETLKFLQ 213
            +  G +  R  +I+D    ++ I  N     + +DE L+ ++
Sbjct: 120 KEEDG-VAYRGLFIIDPKQNLRQITVNDLPVGRDVDEALRLVK 161

>1we0_A Alkyl hydroperoxide reductase C; peroxiredoxin, AHPC, oxidoreductase; 2.90A {Amphibacillus xylanus} SCOP: c.47.1.10 Length = 187

 Score = 95.7 bits (239), Expect = 6e-25
 Identities = 38/151 (25%), Positives = 66/151 (43%), Gaps = 9/151 (5%)

Query: 71  GQAPPSFT----LKDQEGRNVSLSKFKGKPVVVYFYPADETPGCTKQACAFRDSYEKFKK 126
           G     F        ++   V+ +  KGK  +V FYPAD +  C  +    +  Y + KK
Sbjct: 4   GTEVQPFRAQAFQSGKDFFEVTEADLKGKWSIVVFYPADFSFVCPTELEDVQKEYAELKK 63

Query: 127 AGAEVIGISGDDSSSHKAFAKKY----RLPYTLLSDEGNKVRKEWGVPADFFGSLPGRQT 182
            G EV  +S D    HKA+ +       + Y ++ D    + +++ V  +  G L  R T
Sbjct: 64  LGVEVYSVSTDTHFVHKAWHENSPAVGSIEYIMIGDPSQTISRQFDVLNEETG-LADRGT 122

Query: 183 YILDKNGVVQLIYNNQFQPEKHIDETLKFLQ 213
           +I+D +GV+Q I  N     +     +  ++
Sbjct: 123 FIIDPDGVIQAIEINADGIGRDASTLINKVK 153

>3gl3_A Putative thiol:disulfide interchange protein DSBE; oxidoreductase, PSI-II, structural genomics, protein structure initiative; 2.09A {Chlorobium tepidum tls} Length = 152

 Score = 94.6 bits (236), Expect = 6e-25
 Identities = 30/134 (22%), Positives = 53/134 (39%), Gaps = 20/134 (14%)

Query: 68  VSKGQAPPSFTLKDQEGRNVSLSKFKGKPVVVYF-----YPADETPGCTKQACAFRDSYE 122
           + KG   P F L  + G  V LS   G  V + F      P      C +          
Sbjct: 3   LDKGDKAPDFALPGKTG-VVKLSDKTGSVVYLDFWASWCGP------CRQSFPWMNQMQA 55

Query: 123 KFKKAGAEVIGISGDDSSSH-KAFAKKYRLPYTLLSDEGNKVRKEWGVPADFFGSLPGRQ 181
           K+K  G +V+ ++ D  +     F  +    +T+  D   +  + +GV       +P   
Sbjct: 56  KYKAKGFQVVAVNLDAKTGDAMKFLAQVPAEFTVAFDPKGQTPRLYGVKG-----MP--T 108

Query: 182 TYILDKNGVVQLIY 195
           ++++D+NG V L +
Sbjct: 109 SFLIDRNGKVLLQH 122

>2pn8_A Peroxiredoxin-4; thioredoxin, oxidoreductase, structural genomics consortium, SGC; 1.80A {Homo sapiens} Length = 211

 Score = 96.2 bits (240), Expect = 6e-25
 Identities = 45/169 (26%), Positives = 78/169 (46%), Gaps = 11/169 (6%)

Query: 55  PSSTSFKTSISAKVSKGQAPPSFT---LKDQEGRNVSLSKFKGKPVVVYFYPADETPGCT 111
             S+           +    P +    + D E + + L+ ++GK +V +FYP D T  C 
Sbjct: 6   HHSSGVDLGTENLYFQSMPAPYWEGTAVIDGEFKELKLTDYRGKYLVFFFYPLDFTFVCP 65

Query: 112 KQACAFRDSYEKFKKAGAEVIGISGDDSSSHKAFAKKYR-------LPYTLLSDEGNKVR 164
            +  AF D  E+F+    EV+  S D   +H A+    R       +   LLSD  +++ 
Sbjct: 66  TEIIAFGDRLEEFRSINTEVVACSVDSQFTHLAWINTPRRQGGLGPIRIPLLSDLTHQIS 125

Query: 165 KEWGVPADFFGSLPGRQTYILDKNGVVQLIYNNQFQPEKHIDETLKFLQ 213
           K++GV  +  G    R  +I+D  G+++ I  N     + +DETL+ +Q
Sbjct: 126 KDYGVYLEDSG-HTLRGLFIIDDKGILRQITLNDLPVGRSVDETLRLVQ 173

>2bmx_A Alkyl hydroperoxidase C; peroxiredoxin, antioxidant defense system, oxidoreductase, structural proteomics in EURO spine; 2.4A {Mycobacterium tuberculosis} SCOP: c.47.1.10 Length = 195

 Score = 95.4 bits (238), Expect = 9e-25
 Identities = 35/155 (22%), Positives = 70/155 (45%), Gaps = 6/155 (3%)

Query: 63  SISAKVSKGQAPPSFTLKDQEGRNVSLSKFKGKPVVVYFYPADETPGCTKQACAFRDSYE 122
            ++A +    +             ++  +  GK  VV+F+P D T  C  +  AF    +
Sbjct: 14  QLTALIGGDLSKVDAKQPGDYFTTITSDEHPGKWRVVFFWPKDFTFVCPTEIAAFSKLND 73

Query: 123 KFKKAGAEVIGISGDDSSSHKAFAKKY----RLPYTLLSDEGNKVRKEWGVPADFFGSLP 178
           +F+   A+++G+S D   +H  +  ++     LP+ +LSD   ++ +  GV       + 
Sbjct: 74  EFEDRDAQILGVSIDSEFAHFQWRAQHNDLKTLPFPMLSDIKRELSQAAGVLNA--DGVA 131

Query: 179 GRQTYILDKNGVVQLIYNNQFQPEKHIDETLKFLQ 213
            R T+I+D N  +Q +        +++DE L+ L 
Sbjct: 132 DRVTFIVDPNNEIQFVSATAGSVGRNVDEVLRVLD 166

>3hcz_A Possible thiol-disulfide isomerase; APC61559.2, cytophaga hutchinsoni structural genomics, PSI-2, protein structure initiative; 1.88A {Cytophaga hutchinsonii} Length = 148

 Score = 93.6 bits (233), Expect = 1e-24
 Identities = 24/154 (15%), Positives = 58/154 (37%), Gaps = 12/154 (7%)

Query: 65  SAKVSKGQAPPSFTLKDQEGRNVSLSKFKGKPVVVYFYPADETPGCTKQACAFRDSYEKF 124
           +A +  G+  P+  + D  G    L   + K  +++F+   +   C ++     D + K 
Sbjct: 2   NAPLLLGKKAPNLYMTDTTGTYRYLYDVQAKYTILFFW-DSQCGHCQQETPKLYDWWLKN 60

Query: 125 KKAGAEVIGISGDDSSSH-KAFAKKYRL-PYTLLSDEG--NKVRKEWGVPADFFGSLPGR 180
           +  G +V   + +        F +  ++  +  + D       +  + +      + P  
Sbjct: 61  RAKGIQVYAANIERKDEEWLKFIRSKKIGGWLNVRDSKNHTDFKITYDI-----YATP-- 113

Query: 181 QTYILDKNGVVQLIYNNQFQPEKHIDETLKFLQS 214
             Y+LDKN V+          +  + +  K L++
Sbjct: 114 VLYVLDKNKVIIAKRIGYENLDDFLVQYEKSLKT 147

>1zye_A Thioredoxin-dependent peroxide reductase; catenane, dodecamer, peroxiredoxin, oxidoreductase; 3.30A {Bos taurus} SCOP: c.47.1.10 Length = 220

 Score = 95.4 bits (238), Expect = 2e-24
 Identities = 49/170 (28%), Positives = 82/170 (48%), Gaps = 13/170 (7%)

Query: 54  IPSSTSFKTSISAKVSKGQAPPSFTL---KDQEGRNVSLSKFKGKPVVVYFYPADETPGC 110
           +P  +      +  V++  AP  F        E + +SL  FKGK +V++FYP D T  C
Sbjct: 15  VPRGSHMLEDPAPAVTQ-HAPY-FKGTAVVSGEFKEISLDDFKGKYLVLFFYPLDFTFVC 72

Query: 111 TKQACAFRDSYEKFKKAGAEVIGISGDDSSSHKAFAKKYR-------LPYTLLSDEGNKV 163
             +  AF D   +F     EV+ +S D   SH A+    R       +   LLSD   ++
Sbjct: 73  PTEIIAFSDKASEFHDVNCEVVAVSVDSHFSHLAWINTPRKNGGLGHMNIALLSDLTKQI 132

Query: 164 RKEWGVPADFFGSLPGRQTYILDKNGVVQLIYNNQFQPEKHIDETLKFLQ 213
            +++GV  +  G L  R  +I+D NGV++ +  N     + ++ETL+ ++
Sbjct: 133 SRDYGVLLEGPG-LALRGLFIIDPNGVIKHLSVNDLPVGRSVEETLRLVK 181

>3or5_A Thiol:disulfide interchange protein, thioredoxin protein; PSI-II, structural genomics, protein structure initiative; 1.66A {Chlorobaculum tepidum} Length = 165

 Score = 93.6 bits (233), Expect = 2e-24
 Identities = 26/150 (17%), Positives = 58/150 (38%), Gaps = 7/150 (4%)

Query: 65  SAKVSKGQAPPSFTLKDQEGRNVSLSKFKGKPVVVYFYPADETPGCTKQACAFRDSYEKF 124
           +   ++    PSF+    +G+  S +  KGK  +V F+ A   P C  +        + +
Sbjct: 5   AQADARPTPAPSFSGVTVDGKPFSSASLKGKAYIVNFF-ATWCPPCRSEIPDMVQVQKTW 63

Query: 125 KKAGAEVIGISGDDSSSH-KAFAKKYRLPYTLLSDEGNKVRKEWGVPADFFGSLPGRQTY 183
              G   +GI+ ++   + K + K   + Y ++      +R   G        +P   ++
Sbjct: 64  ASRGFTFVGIAVNEQLPNVKNYMKTQGIIYPVMMATPELIRAFNGYIDGGITGIP--TSF 121

Query: 184 ILDKNGVVQLIYNNQFQP---EKHIDETLK 210
           ++D +G V  +          ++ +   L 
Sbjct: 122 VIDASGNVSGVIVGPRSKADFDRIVKMALG 151

>1zof_A Alkyl hydroperoxide-reductase; decamer, toroide-shaped complex, oxidoreductase; 2.95A {Helicobacter pylori} SCOP: c.47.1.10 Length = 198

 Score = 94.6 bits (236), Expect = 2e-24
 Identities = 35/156 (22%), Positives = 68/156 (43%), Gaps = 15/156 (9%)

Query: 71  GQAPPSFTLK-----DQEGRNVSLSKFKGK-PVVVYFYPADETPGCTKQACAFRDSYEKF 124
            +  P F        ++   +  LSK  GK  V+++F+P D T  C  +  AF    + F
Sbjct: 4   TKLAPDFKAPAVLGNNEVDEHFELSKNLGKNGVILFFWPKDFTFVCPTEIIAFDKRVKDF 63

Query: 125 KKAGAEVIGISGDDSSSHKAFAKKYR-------LPYTLLSDEGNKVRKEWGVPADFFGSL 177
            + G  VIG+S D    H A+            + + +++D    + +++ V  +   ++
Sbjct: 64  HEKGFNVIGVSIDSEQVHFAWKNTPVEKGGIGQVSFPMVADITKSISRDYDVLFE--EAI 121

Query: 178 PGRQTYILDKNGVVQLIYNNQFQPEKHIDETLKFLQ 213
             R  +++DKN  V+    N     ++ DE L+ + 
Sbjct: 122 ALRGAFLIDKNMKVRHAVINDLPLGRNADEMLRMVD 157

>3sbc_A Peroxiredoxin TSA1; alpha-beta fold, peroxidase, cytosol, oxidoreductase; 2.80A {Saccharomyces cerevisiae} Length = 216

 Score = 95.0 bits (237), Expect = 2e-24
 Identities = 48/163 (29%), Positives = 81/163 (49%), Gaps = 13/163 (7%)

Query: 61  KTSISAKVSKGQAPPSFTLK---DQEGRNVSLSKFKGKPVVVYFYPADETPGCTKQACAF 117
            + + A+V K QAP  F      D     VSL K+KGK VV+ F P   T     +  AF
Sbjct: 18  GSHMVAQVQK-QAPT-FKKTAVVDGVFDEVSLDKYKGKYVVLAFIPLAFTFVSPTEIIAF 75

Query: 118 RDSYEKFKKAGAEVIGISGDDSSSHKAFAKKYR-------LPYTLLSDEGNKVRKEWGVP 170
            ++ +KF++ GA+V+  S D   S  A+    R       +   LL+D  + + +++GV 
Sbjct: 76  SEAAKKFEEQGAQVLFASTDSEYSLLAWTNIPRKEGGLGPINIPLLADTNHSLSRDYGVL 135

Query: 171 ADFFGSLPGRQTYILDKNGVVQLIYNNQFQPEKHIDETLKFLQ 213
            +  G +  R  +I+D  GV++ I  N     +++DE L+ ++
Sbjct: 136 IEEEG-VALRGLFIIDPKGVIRHITINDLPVGRNVDEALRLVE 177

>2h01_A 2-Cys peroxiredoxin; thioredoxin peroxidase, structural genomics, SGC, structural genomics consortium, oxidoreductase; 2.30A {Plasmodium yoelii} SCOP: c.47.1.10 Length = 192

 Score = 93.8 bits (234), Expect = 3e-24
 Identities = 46/151 (30%), Positives = 71/151 (47%), Gaps = 14/151 (9%)

Query: 75  PSFT----LKDQEGRNVSLSKFKGKP-VVVYFYPADETPGCTKQACAFRDSYEKFKKAGA 129
           PSF       D     VSLS F GK  V++YFYP D T  C  +  A   + + FK+   
Sbjct: 7   PSFKAEAVFGDNTFGEVSLSDFIGKKYVLLYFYPLDFTFVCPSEIIALDKALDSFKERNV 66

Query: 130 EVIGISGDDSSSHKAFAKKYR-------LPYTLLSDEGNKVRKEWGVPADFFGSLPGRQT 182
           E++G S D   +H A+ K          + +TL+SD    + + + V  +   S+  R  
Sbjct: 67  ELLGCSVDSKFTHLAWKKTPLSQGGIGNIKHTLISDISKSIARSYDVLFN--ESVALRAF 124

Query: 183 YILDKNGVVQLIYNNQFQPEKHIDETLKFLQ 213
            ++DK GVVQ +  N     + +DE L+ + 
Sbjct: 125 VLIDKQGVVQHLLVNNLALGRSVDEILRLID 155

>1lu4_A Soluble secreted antigen MPT53; thioredoxin-like fold, structural genomics, PSI, protein structure initiative; 1.12A {Mycobacterium tuberculosis} SCOP: c.47.1.10 Length = 136

 Score = 91.6 bits (228), Expect = 5e-24
 Identities = 27/148 (18%), Positives = 47/148 (31%), Gaps = 16/148 (10%)

Query: 71  GQAPPSFTLKDQEGRNVSLSKFKGKPVVVYFYPADET--PGCTKQACAFRDSYEKFKKAG 128
                 FT     G     +  +GKP V++F+       P C  +A +            
Sbjct: 1   ADERLQFTATTLSGAPFDGASLQGKPAVLWFW-T--PWCPFCNAEAPSLSQVAAANP--A 55

Query: 129 AEVIGISGDDSSSH-KAFAKKYRLPYTLLSDEGNKVRKEWGVPADFFGSLPGRQTYILDK 187
              +GI+        ++F  KY L +T L+D    +   + VP       P         
Sbjct: 56  VTFVGIATRADVGAMQSFVSKYNLNFTNLNDADGVIWARYNVPW-----QP--AFVFYRA 108

Query: 188 NGVVQLIYNNQFQ-PEKHIDETLKFLQS 214
           +G    + N      +  +   +  L S
Sbjct: 109 DGTSTFVNNPTAAMSQDELSGRVAALTS 136

>3keb_A Probable thiol peroxidase; structural genomics, APC40679, PSI-2, Pro structure initiative; HET: MSE; 1.80A {Chromobacterium violaceum} Length = 224

 Score = 93.4 bits (232), Expect = 9e-24
 Identities = 29/130 (22%), Positives = 43/130 (33%), Gaps = 6/130 (4%)

Query: 68  VSKGQAPPSFTLKDQEGRNVSLSKFKGKPVVVYFYPADETPGCTKQACAFRDSYEKFKKA 127
             KG   PSF L D +  + +L  F   P ++    + +                     
Sbjct: 22  PRKGDYLPSFMLVDDQKHDAALESFSHTPKLIVTLLSVDEDEHAGLLLLRETRRFLDSWP 81

Query: 128 GAEVIGISGDDSSSHKAFAKKYRLP-YTLLSD-EGNKVRKEWGVPADFFGSLPG---RQT 182
             ++I I+ D  SS      ++ LP   LLS   G    K +GV       L G      
Sbjct: 82  HLKLIVITVDSPSSLARARHEHGLPNIALLSTLRGRDFHKRYGV-LITEYPLSGYTSPAI 140

Query: 183 YILDKNGVVQ 192
            + D   VV 
Sbjct: 141 ILADAANVVH 150

>2c0d_A Thioredoxin peroxidase 2; peroxiredoxin, 2-Cys, thioredoxin dependant, mitochondrial, antioxidant, oxidoreductase, redox-active center; 1.78A {Plasmodium falciparum} Length = 221

 Score = 92.3 bits (230), Expect = 2e-23
 Identities = 47/171 (27%), Positives = 73/171 (42%), Gaps = 16/171 (9%)

Query: 55  PSSTSFKTSISAKVSKGQAPPSFT----LKDQEGRNVSLSKFKG-KPVVVYFYPADETPG 109
                 +    + V+K +A   FT     K+ E  NV LS F G K   + FYP + T  
Sbjct: 14  SGHIEGRHMKLSLVTK-KAYN-FTAQGLNKNNEIINVDLSSFIGQKYCCLLFYPLNYTFV 71

Query: 110 CTKQACAFRDSYEKFKKAGAEVIGISGDDSSSHKAFAKKYR-------LPYTLLSDEGNK 162
           C  +   F    + F+    E++GIS D   SH A+            + +TL+SD    
Sbjct: 72  CPTEIIEFNKHIKDFENKNVELLGISVDSVYSHLAWKNMPIEKGGIGNVEFTLVSDINKD 131

Query: 163 VRKEWGVPADFFGSLPGRQTYILDKNGVVQLIYNNQFQPEKHIDETLKFLQ 213
           + K + V  D   S   R  +I+DKNG V+    N     +++ E L+ + 
Sbjct: 132 ISKNYNVLYD--NSFALRGLFIIDKNGCVRHQTVNDLPIGRNVQEVLRTID 180

>3raz_A Thioredoxin-related protein; structural genomics, PSI-2, protein structure initiative; 2.00A {Neisseria meningitidis serogroup B} Length = 151

 Score = 89.0 bits (221), Expect = 7e-23
 Identities = 27/143 (18%), Positives = 49/143 (34%), Gaps = 8/143 (5%)

Query: 74  PPSFTLKDQEGRNVSLSKFKGKPVVVYFYPADET--PGCTKQACAFRDSYEKFKKAGAEV 131
                   ++    SL   K    +V  + A  T    C K+  A    Y+  KK   ++
Sbjct: 4   SADELAGWKDNTPQSLQSLKAPVRIVNLW-A--TWCGPCRKEMPAMSKWYKAQKKGSVDM 60

Query: 132 IGISGDDSSSHKAFAKKYRLPYTLLSDEGNKVRKEWGVPADFFGSLPGRQTYILDKNGVV 191
           +GI+ D S +   F K+  + Y +    G   R       +  G LP   T +       
Sbjct: 61  VGIALDTSDNIGNFLKQTPVSYPIWRYTGANSRNFMKTYGNTVGVLP--FTVVEAPKCGY 118

Query: 192 QLIYNNQFQPEKHIDETLKFLQS 214
           +     +   +  + + +K   S
Sbjct: 119 RQTITGEVNEKS-LTDAVKLAHS 140

>3hdc_A Thioredoxin family protein; ATCC53774, DSM 7210, , structural genomics, PSI-2, protein structure initiative; 1.77A {Geobacter metallireducens gs-15} Length = 158

 Score = 88.9 bits (221), Expect = 1e-22
 Identities = 31/129 (24%), Positives = 60/129 (46%), Gaps = 14/129 (10%)

Query: 65  SAKVSKGQAPPSFTLKDQEGRNVSLSKFKGKPVVVYFYPADET--PGCTKQACAFRDSYE 122
           +  V  G   P+F L    G N SL++++GK V+V F+ A  +  P C  +  +     +
Sbjct: 12  APLVRTGALAPNFKLPTLSGENKSLAQYRGKIVLVNFW-A--SWCPYCRDEMPSMDRLVK 68

Query: 123 KFKKAGAEVIGISGDDSSSHKAFAKKYRLPYTLLSDEGNKVRKEWGVPADFFGSLPGRQT 182
            F K    V+ ++ +         ++  + +  LSD   +V++ +G        LP   T
Sbjct: 69  SFPKGDLVVLAVNVEKRF--PEKYRRAPVSFNFLSDATGQVQQRYGANR-----LP--DT 119

Query: 183 YILDKNGVV 191
           +I+D+ G++
Sbjct: 120 FIVDRKGII 128

>2lrt_A Uncharacterized protein; structural genomics, thioredoxin-like, NEW YORK structural G research consortium, nysgrc, PSI-biology; NMR {Bacteroides vulgatus} Length = 152

 Score = 88.2 bits (219), Expect = 2e-22
 Identities = 33/150 (22%), Positives = 56/150 (37%), Gaps = 12/150 (8%)

Query: 64  ISAKVSKGQAPPSFTLKDQEGRNVSLSKFKGKPVVVYFYPADETPGCTKQACAFRDSYEK 123
           I     K  +     LKD +G   SL+  KGK V++ F              A R+ Y K
Sbjct: 5   IPEDKIKEASIIDIQLKDLKGNTRSLTDLKGKVVLIDFT-VYNNAMSAAHNLALRELYNK 63

Query: 124 FKKAGAEVIGISGDDSSSHKAFAKKYRLPYTLLSDEG---NKVRKEWGVPADFFGSLPGR 180
           +   G E+  IS D    H        LP+  + D     +     + V      +LP  
Sbjct: 64  YASQGFEIYQISLDG-DEHFWKTSADNLPWVCVRDANGAYSSYISLYNV-----TNLP-- 115

Query: 181 QTYILDKNGVVQLIYNNQFQPEKHIDETLK 210
             +++++N  +     N    ++ I + L+
Sbjct: 116 SVFLVNRNNELSARGENIKDLDEAIKKLLE 145

>3erw_A Sporulation thiol-disulfide oxidoreductase A; thioredoxin-like fold, RESA-like fold, dithiol, STOA, redox-active center; 2.50A {Bacillus subtilis} Length = 145

 Score = 87.0 bits (216), Expect = 4e-22
 Identities = 26/152 (17%), Positives = 67/152 (44%), Gaps = 18/152 (11%)

Query: 65  SAKVSKGQAPPSFTLKDQEGRNVSLSKFKGKPVVVYFYPADET--PGCTKQACAFRDSYE 122
            A+  +   P  F +K  EG ++S+   KG+  +++F+    +  P C K+   F+  Y+
Sbjct: 6   QAEEKQPAVPAVFLMKTIEGEDISIPN-KGQKTILHFW-T--SWCPPCKKELPQFQSFYD 61

Query: 123 KFKKAGAEVIGIS----GDDSSSHKAFAKKYRLPYTLLSDEGNKVRKEWGVPADFFGSLP 178
                  +++ ++      +    + F K  +L + ++ D   ++ KE+ +       +P
Sbjct: 62  AHPSDSVKLVTVNLVNSEQNQQVVEDFIKANKLTFPIVLDSKGELMKEYHIIT-----IP 116

Query: 179 GRQTYILDKNGVVQLIYNNQFQPEKHIDETLK 210
              +++L++ G ++         E+ + E  +
Sbjct: 117 --TSFLLNEKGEIEKTKIGPMTAEQ-LKEWTE 145

>3kcm_A Thioredoxin family protein; SGX, thioredoxin protein, PSI, structural genomics, protein initiative; 2.45A {Geobacter metallireducens gs-15} Length = 154

 Score = 87.0 bits (216), Expect = 5e-22
 Identities = 31/128 (24%), Positives = 55/128 (42%), Gaps = 14/128 (10%)

Query: 68  VSKGQAPPSFTLKDQEGRNVSLSKFKGKPVVVYFYPADET--PGCTKQACAFRDSYEKFK 125
             +    P FTL    G  V LS  KG+ V+V F+ A  T  P C ++  +         
Sbjct: 2   SLEENPAPDFTLNTLNGEVVKLSDLKGQVVIVNFW-A--TWCPPCREEIPSMMRLNAAMA 58

Query: 126 KAGAEVIGISGDDSSSH--KAFAKKYRLPYTLLSDEGNKVRKEWGVPADFFGSLPGRQTY 183
                ++ +S D+      + F +K      +L D   +V K +G        +P  +T+
Sbjct: 59  GKPFRMLCVSIDEGGKVAVEEFFRKTGFTLPVLLDADKRVGKLYGTTG-----VP--ETF 111

Query: 184 ILDKNGVV 191
           ++D++GV+
Sbjct: 112 VIDRHGVI 119

>2lrn_A Thiol:disulfide interchange protein; structural genomics, thioredoxin-like, NEW YORK structural G research consortium, oxidoreductase; NMR {Bacteroides SP} Length = 152

 Score = 85.4 bits (212), Expect = 2e-21
 Identities = 31/147 (21%), Positives = 58/147 (39%), Gaps = 12/147 (8%)

Query: 68  VSKGQAPPSFTLKDQEGRNVSLSKFKGKPVVVYFYPADETPGCTKQACAFRDSYEKFKKA 127
           ++ G   P+ T  D +G +VSL+ FKGK V+V F+       C K+      +Y  FK  
Sbjct: 3   LATGSVAPAITGIDLKGNSVSLNDFKGKYVLVDFW-FAGCSWCRKETPYLLKTYNAFKDK 61

Query: 128 GAEVIGISGDDS-SSHKAFAKKYRLPYT---LLSDEGNKVRKEWGVPADFFGSLPGRQTY 183
           G  + G+S D      K   ++ +  +    L  D+   V + + +        P     
Sbjct: 62  GFTIYGVSTDRREEDWKKAIEEDKSYWNQVLLQKDDVKDVLESYCI-----VGFP--HII 114

Query: 184 ILDKNGVVQLIYNNQFQPEKHIDETLK 210
           ++D  G +             +++ + 
Sbjct: 115 LVDPEGKIVAKELRGDDLYNTVEKFVN 141

>3ewl_A Uncharacterized conserved protein BF1870; alpha-beta fold, structural genomics, PSI-2, protein structu initiative; 2.00A {Bacteroides fragilis} Length = 142

 Score = 83.2 bits (206), Expect = 1e-20
 Identities = 24/127 (18%), Positives = 45/127 (35%), Gaps = 14/127 (11%)

Query: 71  GQAPPSFTLKDQEGRNVSLSKFKGKPVVVYFYPADETPGCTKQACAFRDS---YEKFKKA 127
           G     FT     G N  +S+ K +  +++FY   +   C K    F +     E  +  
Sbjct: 4   GMKAADFTYVTVHGDNSRMSRLKAQYTMLFFY-DPDCSNCRKFEKLFAEIPAFVEMVENG 62

Query: 128 GAEVIGISGDDSSSH-KAFAKKYRLPYTLLSDEG--NKVRKEWGVPADFFGSLPGRQTYI 184
              V+ I  D++       A      + +  ++    + R+ + + A      P    Y+
Sbjct: 63  TLRVLAIYPDENREEWATKAVYMPQGWIVGWNKAGDIRTRQLYDIRA-----TP--TIYL 115

Query: 185 LDKNGVV 191
           LD    V
Sbjct: 116 LDGRKRV 122

>2v2g_A Peroxiredoxin 6; oxidoreductase, antioxidant enzymes; 1.60A {Arenicola marina} PDB: 2v32_A 2v41_A Length = 233

 Score = 85.4 bits (212), Expect = 1e-20
 Identities = 33/158 (20%), Positives = 67/158 (42%), Gaps = 15/158 (9%)

Query: 71  GQAPPSFTLKDQEGRNVSLSKFKGKP-VVVYFYPADETPGCTKQACAFRDSYEKFKKAGA 129
           G+  P+F      G+ +    + G    V++ +P D TP  T +          FKK G 
Sbjct: 6   GEVFPNFEADSTIGK-LKFHDWLGNSWGVLFSHPRDFTPVSTTELGRVIQLEGDFKKRGV 64

Query: 130 EVIGISGDDSSSHKAFAK--------KYRLPYTLLSDEGNKVRKEWGV-----PADFFGS 176
           ++I +S D+ + HK +++        K  +PY +++DE  ++  + G+            
Sbjct: 65  KLIALSCDNVADHKEWSEDVKCLSGVKGDMPYPIIADETRELAVKLGMVDPDERTSTGMP 124

Query: 177 LPGRQTYILDKNGVVQLIYNNQFQPEKHIDETLKFLQS 214
           L  R  +I+  +  ++L         ++  E L+ + S
Sbjct: 125 LTCRAVFIIGPDKKLKLSILYPATTGRNFSEILRVIDS 162

>3fkf_A Thiol-disulfide oxidoreductase; structural genomics, PSI-2, structure initiative, midwest center for structural genomic oxidoreductase; 2.20A {Bacteroides fragilis} Length = 148

 Score = 83.1 bits (206), Expect = 1e-20
 Identities = 31/153 (20%), Positives = 65/153 (42%), Gaps = 15/153 (9%)

Query: 65  SAKVSKGQAPPSFTLKDQEGRNVSLSK--FKGKPVVVYFYPADETPGCTKQACAFRDSYE 122
           +AKV+ G++ P F+L +++G  +S S   F+ + +++ F+ A       +     +   +
Sbjct: 2   NAKVTVGKSAPYFSLPNEKGEKLSRSAERFRNRYLLLNFW-ASWCDPQPEANAELKRLNK 60

Query: 123 KFKK-AGAEVIGISGDDSSSH-KAFAKKYRLPYTLLSDEG---NKVRKEWGVPADFFGSL 177
           ++KK     ++GIS D      +   KK  L +  + D     ++  K++ +      +L
Sbjct: 61  EYKKNKNFAMLGISLDIDREAWETAIKKDTLSWDQVCDFTGLSSETAKQYAI-----LTL 115

Query: 178 PGRQTYILDKNGVVQLIYNNQFQPEKHIDETLK 210
           P     +L   G +             + E LK
Sbjct: 116 P--TNILLSPTGKILARDIQGEALTGKLKELLK 146

>2lja_A Putative thiol-disulfide oxidoreductase; structural genomics, unknown function, thioredoxin-like; NMR {Bacteroides vulgatus} Length = 152

 Score = 82.4 bits (204), Expect = 3e-20
 Identities = 24/128 (18%), Positives = 48/128 (37%), Gaps = 20/128 (15%)

Query: 71  GQAPPSFTLKDQEGRNVSLSKFKGKPVVVYFY-----PADETPGCTKQACAFRDSYEKFK 125
             +  SF+  D  G+ VSL+  KGK + +  +     P      C  +  A ++  EK+ 
Sbjct: 7   NPSAASFSYPDINGKTVSLADLKGKYIYIDVWATWCGP------CRGELPALKELEEKYA 60

Query: 126 KAGAEVIGISGDDSSSH-KAFAKKYRLP-YTLLSDEGNKVRKEWGVPADFFGSLPGRQTY 183
                 + +S D +    +    K +L    L           + +       +P  +  
Sbjct: 61  GKDIHFVSLSCDKNKKAWENMVTKDQLKGIQLHMGTDRTFMDAYLI-----NGIP--RFI 113

Query: 184 ILDKNGVV 191
           +LD++G +
Sbjct: 114 LLDRDGKI 121

>3eur_A Uncharacterized protein; PSI2,MCSG, conserved protein, structural genomics, protein S initiative, midwest center for structural genomics; HET: MSE; 1.30A {Bacteroides fragilis} Length = 142

 Score = 81.6 bits (202), Expect = 4e-20
 Identities = 28/137 (20%), Positives = 47/137 (34%), Gaps = 24/137 (17%)

Query: 66  AKVSKGQAPPSFTLKDQEGRNVSLSKFKGKPVVVYFYPADETPGCTKQAC--------AF 117
           AK   G    +FT     G   +L +F  +  +++       PGC   AC        A 
Sbjct: 3   AKNRLGTKALNFTYTLDSGVKGTLYQFPAEYTLLFIN----NPGCH--ACAEMIEGLKAS 56

Query: 118 RDSYEKFKKAGAEVIGISGDDSSSH-KAFAKKYRLPYTLLSDEG--NKVRKEWGVPADFF 174
                       +V+ I  D+     K     +   +T   D+    K +  + +     
Sbjct: 57  PVINGFTAAKKLKVLSIYPDEELDEWKKHRNDFAKEWTNGYDKELVIKNKNLYDLR---- 112

Query: 175 GSLPGRQTYILDKNGVV 191
            ++P    Y+LDKN  V
Sbjct: 113 -AIP--TLYLLDKNKTV 126

>3a2v_A Probable peroxiredoxin; thioredoxin peroxidase, hydrogen peroxide, antioxidant, oxidoreductase, redox-active center; 1.65A {Aeropyrum pernix} PDB: 1x0r_A 2zct_A 2nvl_A 2e2g_A 2cv4_A* 3a5w_A 2e2m_A 3a2x_A 3a2w_A Length = 249

 Score = 84.3 bits (209), Expect = 4e-20
 Identities = 37/154 (24%), Positives = 73/154 (47%), Gaps = 12/154 (7%)

Query: 71  GQAPPSFTLKDQEG--RNVSLSKFKGKPVVVYFYPADETPGCTKQACAFRDSYEKFKKAG 128
           G+  P   +    G  +       +GK  V++ +PAD TP CT +  +F   YE F++ G
Sbjct: 8   GERFPEMEVTTDHGVIKLPDHYVSQGKWFVLFSHPADFTPVCTTEFVSFARRYEDFQRLG 67

Query: 129 AEVIGISGDDSSSHKAFAK------KYRLPYTLLSDEGNKVRKEWGV--PADFFGSLPGR 180
            ++IG+S D   SH  + +        R+P+ +++D    V +  G+        +   R
Sbjct: 68  VDLIGLSVDSVFSHIKWKEWIERHIGVRIPFPIIADPQGTVARRLGLLHAES--ATHTVR 125

Query: 181 QTYILDKNGVVQLIYNNQFQPEKHIDETLKFLQS 214
             +I+D  GV++ +     +  + +DE L+ +++
Sbjct: 126 GVFIVDARGVIRTMLYYPMELGRLVDEILRIVKA 159

>2hyx_A Protein DIPZ; thioredoxin fold, jelly-roll, structural genomics, TB struct genomics consortium, TBSGC, unknown function; 1.90A {Mycobacterium tuberculosis} Length = 352

 Score = 85.8 bits (212), Expect = 4e-20
 Identities = 27/160 (16%), Positives = 52/160 (32%), Gaps = 22/160 (13%)

Query: 65  SAKVSKGQAPPSFT-----LKDQEGRNVSLSKFKGKPVVVYFYPADETPGCTKQACAFRD 119
           +A++      P        L     + + L   +GK V++ F+ A     C +       
Sbjct: 48  AAQLESCGTAPDLKGITGWLNTPGNKPIDLKSLRGKVVLIDFW-AYSCINCQRAIPHVVG 106

Query: 120 SYEKFKKAGAEVIGISGDDSSSH------KAFAKKYRLPYTLLSDEGNKVRKEWGVPADF 173
            Y+ +K +G  VIG+   + +           A    + Y +  D        +      
Sbjct: 107 WYQAYKDSGLAVIGVHTPEYAFEKVPGNVAKGAANLGISYPIALDNNYATWTNYRNRY-- 164

Query: 174 FGSLPGRQTYILDKNGVVQLIY---NNQFQPEKHIDETLK 210
               P    Y++D  G V+ I     +    E  + + L 
Sbjct: 165 ---WP--AEYLIDATGTVRHIKFGEGDYNVTETLVRQLLN 199

>3ha9_A Uncharacterized thioredoxin-like protein; PSI, MCSG, structural G midwest center for structural genomics, protein structure initiative; 1.70A {Aeropyrum pernix} Length = 165

 Score = 82.2 bits (203), Expect = 5e-20
 Identities = 30/178 (16%), Positives = 61/178 (34%), Gaps = 35/178 (19%)

Query: 58  TSFKTSISAKVSKGQAPPSFTLKDQEGRNVSLSKFKGKPVVVYFYPADET--PGCTKQAC 115
           ++   +        +   SF+L   +G  +SL+   G  V+++F  A     P C   A 
Sbjct: 1   SNAPRAAGHSEEVLEREASFSLTTIDGEVISLNNVGGDVVILWFM-A--AWCPSCVYMAD 57

Query: 116 AFRDSYEKFKKAGAEVIGISGDDSSSH-------------------KAFAKKYRLPYTLL 156
                 EK++     VI I    + +                    + F   Y  P  ++
Sbjct: 58  LLDRLTEKYR--EISVIAIDFWTAEALKALGLNKPGYPPPDTPEMFRKFIANYGDPSWIM 115

Query: 157 SDEGNKVRKEWGVPADFFGSLPGRQTYILDKNGVVQLIYNNQFQPEKHIDETLKFLQS 214
             +   + +++ V      S+      I+DK+  V  +Y         ++  +K +Q 
Sbjct: 116 VMDDGSLVEKFNVR-----SID--YIVIMDKSSNV--LYAGTTPSLGELESVIKSVQG 164

>3fw2_A Thiol-disulfide oxidoreductase; structural genomics, APC61456.1, thiol-disulfide oxidoreduct TLPA-like family, PSI-2; 1.74A {Bacteroides thetaiotaomicron} Length = 150

 Score = 81.3 bits (201), Expect = 7e-20
 Identities = 33/161 (20%), Positives = 65/161 (40%), Gaps = 29/161 (18%)

Query: 65  SAKVSKGQAPPSFTLKDQEGRNVSLS--KFKGKPVVVYF--------YPADETPGCTKQA 114
           +AK   G+  P F+L + +G  ++ S   FK K +++ F                     
Sbjct: 2   NAKSEIGKYAPFFSLPNAKGEKITRSSDAFKQKSLLINFWASWNDSISQKQSNS------ 55

Query: 115 CAFRDSYEKFKKA-GAEVIGISGDDS-SSHKAFAKKYRLPYTLLSDEG---NKVRKEWGV 169
              R+ Y+K+KK     ++GIS D      K   K+  L +  + D G   ++V K++ +
Sbjct: 56  -ELREIYKKYKKNKYIGMLGISLDVDKQQWKDAIKRDTLDWEQVCDFGGLNSEVAKQYSI 114

Query: 170 PADFFGSLPGRQTYILDKNGVVQLIYNNQFQPEKHIDETLK 210
                  +P     +L  +G +        + +K I+  ++
Sbjct: 115 -----YKIP--ANILLSSDGKILAKNLRGEELKKKIENIVE 148

>1prx_A HORF6; peroxiredoxin, hydrogen peroxide, redox regulation, cellular signaling, antioxidant; 2.00A {Homo sapiens} SCOP: c.47.1.10 Length = 224

 Score = 81.5 bits (202), Expect = 3e-19
 Identities = 31/160 (19%), Positives = 61/160 (38%), Gaps = 17/160 (10%)

Query: 71  GQAPPSFTLKDQEGRNVSLSKFKG-KPVVVYFYPADETPGCTKQACAFRDSYEKFKKAGA 129
           G   P+F      GR +    F G    +++ +P D TP CT +         +F K   
Sbjct: 8   GDVAPNFEANTTVGR-IRFHDFLGDSWGILFSHPRDFTPVCTTELGRAAKLAPEFAKRNV 66

Query: 130 EVIGISGDDSSSHKAFAKKYR----------LPYTLLSDEGNKVRKEWGV-----PADFF 174
           ++I +S D    H A++K             LP+ ++ D   ++    G+       +  
Sbjct: 67  KLIALSIDSVEDHLAWSKDINAYNSEEPTEKLPFPIIDDRNRELAILLGMLDPAEKDEKG 126

Query: 175 GSLPGRQTYILDKNGVVQLIYNNQFQPEKHIDETLKFLQS 214
             +  R  ++   +  ++L         ++ DE L+ + S
Sbjct: 127 MPVTARVVFVFGPDKKLKLSILYPATTGRNFDEILRVVIS 166

>1xcc_A 1-Cys peroxiredoxin; unknown function, structural genomics, structural genomics consortium, SGC; 2.30A {Plasmodium yoelii} SCOP: c.47.1.10 PDB: 3tb2_A Length = 220

 Score = 81.1 bits (201), Expect = 3e-19
 Identities = 31/159 (19%), Positives = 62/159 (38%), Gaps = 16/159 (10%)

Query: 71  GQAPPSFTLK--DQEGRNVSLSKF-KGKPVVVYFYPADETPGCTKQACAFRDSYEKFKKA 127
           G   P+FT K    +G    L K+ +    +++ +P D TP CT +       +E F K 
Sbjct: 6   GATFPNFTAKASGIDGD-FELYKYIENSWAILFSHPNDFTPVCTTELAELGKMHEDFLKL 64

Query: 128 GAEVIGISGDDSSSHKA-------FAKKYRLPYTLLSDEGNKVRKEWGVPADFFGSLPG- 179
             ++IG S +   SH         + K  +    ++ DE  ++  +  +  +    + G 
Sbjct: 65  NCKLIGFSCNSKESHDKWIEDIKYYGKLNKWEIPIVCDESRELANKLKIMDEQEKDITGL 124

Query: 180 ----RQTYILDKNGVVQLIYNNQFQPEKHIDETLKFLQS 214
               R  + +     ++          ++  E L+ L+S
Sbjct: 125 PLTCRCLFFISPEKKIKATVLYPATTGRNAHEILRVLKS 163

>1zzo_A RV1677; thioredoxin fold, structural genomics, PSI, protein structure initiative, TB structural genomics consortium, TBSGC; 1.60A {Mycobacterium tuberculosis} SCOP: c.47.1.10 PDB: 3ios_A Length = 136

 Score = 78.9 bits (195), Expect = 4e-19
 Identities = 29/126 (23%), Positives = 47/126 (37%), Gaps = 16/126 (12%)

Query: 73  APPSFTLKDQEGRNVSLSKFKGKPVVVYFYPADET--PGCTKQACAFRDSYEKFKKAGAE 130
           A   F+ K  +G +       GKP V++F+ A     P C  +A                
Sbjct: 4   AQLQFSAKTLDGHDFHGESLLGKPAVLWFW-A--PWCPTCQGEAPVVGQVAASHP--EVT 58

Query: 131 VIGISGDDSSSH-KAFAKKYRLPY-TLLSDEGNKVRKEWGVPADFFGSLPGRQTYILDKN 188
            +G++G D     + F  KY +   T L+D    V   +GV        P      +D +
Sbjct: 59  FVGVAGLDQVPAMQEFVNKYPVKTFTQLADTDGSVWANFGVTQ-----QP--AYAFVDPH 111

Query: 189 GVVQLI 194
           G V ++
Sbjct: 112 GNVDVV 117

>2b5x_A YKUV protein, TRXY; thioredoxin-like, oxidoreductase; NMR {Bacillus subtilis} SCOP: c.47.1.10 PDB: 2b5y_A Length = 148

 Score = 78.5 bits (194), Expect = 7e-19
 Identities = 22/154 (14%), Positives = 49/154 (31%), Gaps = 20/154 (12%)

Query: 68  VSKGQAPPSFTLKDQ--EGRNVSLSKFKGKPVVVYFYPADETPGCTKQACAFRDSYEKFK 125
           +   Q  P  T +     G          KP +++F+ +     C +      +  +K++
Sbjct: 1   MKLRQPMPELTGEKAWLNGEVTREQLIGEKPTLIHFW-SISCHLCKEAMPQVNEFRDKYQ 59

Query: 126 KAGAEVIGISGD------DSSSHKAFAKKYRLPYTLLSDEGNKVRKEWGVPADFFGSLPG 179
                V+ +         D    K  A ++ +   +  D  + +   +         +P 
Sbjct: 60  D-QLNVVAVHMPRSEDDLDPGKIKETAAEHDITQPIFVDSDHALTDAFENEY-----VP- 112

Query: 180 RQTYILDKNGVVQLIYN---NQFQPEKHIDETLK 210
              Y+ DK G ++            EK ++  L 
Sbjct: 113 -AYYVFDKTGQLRHFQAGGSGMKMLEKRVNRVLA 145

>3eyt_A Uncharacterized protein SPOA0173; thioredoxin-like superfamily protein SPOA0173, silicibacter DSS, structural genomics, PSI-2; 1.95A {Silicibacter pomeroyi} Length = 158

 Score = 78.6 bits (194), Expect = 8e-19
 Identities = 25/160 (15%), Positives = 54/160 (33%), Gaps = 26/160 (16%)

Query: 69  SKGQAPPSFTLKD--QEGRNVSLSKFKGKPVVVYFYPADETPGCTKQAC-AFRDSYEKFK 125
           S     P   ++       +++L+  +GK +V+  +     PGC        +     F 
Sbjct: 1   SNAMKAPELQIQQWFNSATDLTLADLRGKVIVIEAF-QMLCPGCVMHGIPLAQKVRAAFP 59

Query: 126 KAGAEVIGIS-------GDDSSSHKAFAKKYRLPYTLLSDE-----GNKVRKEWGVPADF 173
           +    V+G+             S KAF  +YR+ + +  D+       +    + +    
Sbjct: 60  EDKVAVLGLHTVFEHHEAMTPISLKAFLHEYRIKFPVGVDQPGDGAMPRTMAAYQMRG-- 117

Query: 174 FGSLPGRQTYILDKNGVVQLIY---NNQFQPEKHIDETLK 210
               P     ++DK G ++  +    ++      I   L 
Sbjct: 118 ---TP--SLLLIDKAGDLRAHHFGDVSELLLGAEIATLLG 152

>2h30_A Thioredoxin, peptide methionine sulfoxide reductase MSRA/MSRB; reduced, thiol-disulfide exchange, oxidoreductase; 1.60A {Neisseria gonorrhoeae} PDB: 2jzr_A 2jzs_A 2k9f_A 2fy6_A Length = 164

 Score = 77.9 bits (192), Expect = 2e-18
 Identities = 25/139 (17%), Positives = 48/139 (34%), Gaps = 19/139 (13%)

Query: 63  SISAKVSKGQAPPSFTLKDQEGRNVSLSKFKGKPVVVYFYPADET--PGCTKQACAFRDS 120
            I    +        T+K  + R  S+   K KP ++ F+ A  +  P C  +       
Sbjct: 7   KIVDAGTATVPHTMSTMKTADNRPASVYLKKDKPTLIKFW-A--SWCPLCLSELGQAEKW 63

Query: 121 YEKFKKAGAEVIGI-------SGDDSSSHKAFAKKYRLPYTLLSDEGNKVRKEWGVPADF 173
            +  K + A +I +          D    K +A        +++D G  + +   +    
Sbjct: 64  AQDAKFSSANLITVASPGFLHEKKDGEFQKWYAGLNYPKLPVVTDNGGTIAQNLNISV-- 121

Query: 174 FGSLPGRQTYILDKNGVVQ 192
               P     ++ K+G VQ
Sbjct: 122 ---YP--SWALIGKDGDVQ 135

>3lwa_A Secreted thiol-disulfide isomerase; thioredoxin, PSI, MCSG, structural genomics, midwest center for structural genomics; 1.75A {Corynebacterium glutamicum} Length = 183

 Score = 76.7 bits (189), Expect = 7e-18
 Identities = 31/146 (21%), Positives = 50/146 (34%), Gaps = 25/146 (17%)

Query: 61  KTSISAKVSKGQAPPSFTLKD--QEGRNVSLSKFKGKPVVVYF-----YPADETPGCTKQ 113
           K  I    +  Q  P        +EG  ++LS F+ + V++        P      C  +
Sbjct: 24  KMEIFYDEADRQQLPDIGGDSLMEEGTQINLSDFENQVVILNAWGQWCAP------CRSE 77

Query: 114 ACAFRDSYEKFKKAGA------EVIGISGDDSSSHKA--FAKKYRLPYTLLSDEGNKVRK 165
           +   +  +E+ + AG        V+GI+  D S   A  F     L Y  + D       
Sbjct: 78  SDDLQIIHEELQAAGNGDTPGGTVLGINVRDYSRDIAQDFVTDNGLDYPSIYDPPFMTAA 137

Query: 166 EWGVPADFFGSLPGRQTYILDKNGVV 191
             G        +P   T +LDK    
Sbjct: 138 SLGGVP--ASVIP--TTIVLDKQHRP 159

>4evm_A Thioredoxin family protein; structural genomics, niaid, national institute of allergy AN infectious diseases; 1.51A {Streptococcus pneumoniae} Length = 138

 Score = 75.0 bits (185), Expect = 1e-17
 Identities = 24/129 (18%), Positives = 44/129 (34%), Gaps = 19/129 (14%)

Query: 72  QAPPSFTLKDQEGRNVSLSKFKGKPVVVYFYPADET--PGCTKQACAFRDSYEKFKKAGA 129
           +    F L   +G+   LS +KGK V + F+ A  +    C        +  ++      
Sbjct: 1   EVA-DFELMGVDGKTYRLSDYKGKKVYLKFW-A--SWCSICLASLPDTDEIAKEAGDDYV 56

Query: 130 EVIGISGDDSSSH-----KAFAKKYRLP-YTLLSDEGNKVRKEWGVPADFFGSLPGRQTY 183
            +  +S            K + K        +L D   K+ + +GV +      P     
Sbjct: 57  VLTVVSPGHKGEQSEADFKNWYKGLDYKNLPVLVDPSGKLLETYGVRS-----YP--TQA 109

Query: 184 ILDKNGVVQ 192
            +DK G + 
Sbjct: 110 FIDKEGKLV 118

>3lor_A Thiol-disulfide isomerase and thioredoxins; PSI, MCSG, structural genomics, midwest CE structural genomics; HET: MSE; 2.20A {Corynebacterium glutamicum} Length = 160

 Score = 75.6 bits (186), Expect = 1e-17
 Identities = 25/158 (15%), Positives = 52/158 (32%), Gaps = 18/158 (11%)

Query: 68  VSKGQAPPSFTLKDQE---GRNVSLSKFKGKPVVVYFYPADETPGCTKQAC-AFRDSYEK 123
           +S     P   L  QE      +S    +GK VVV  +     PGC        +  +  
Sbjct: 1   MSSLDNAPLLELDVQEWVNHEGLSNEDLRGKVVVVEVF-QMLCPGCVNHGVPQAQKIHRM 59

Query: 124 FKKAGAEVIGIS-------GDDSSSHKAFAKKYRLPYTLLSDEGNKVRKEWGVPADF-FG 175
             ++  +VIG+             + K F  ++ + + +  D   + ++       +   
Sbjct: 60  IDESQVQVIGLHSVFEHHDVMTPEALKVFIDEFGIKFPVAVDMPREGQRIPSTMKKYRLE 119

Query: 176 SLPGRQTYILDKNGVVQLIY---NNQFQPEKHIDETLK 210
             P     + D+ G ++ +     + F     +   L 
Sbjct: 120 GTP--SIILADRKGRIRQVQFGQVDDFVLGLLLGSLLS 155

>4fo5_A Thioredoxin-like protein; AHPC/TSA family protein, structural genomics, joint center F structural genomics, JCSG; 2.02A {Parabacteroides distasonis} Length = 143

 Score = 74.7 bits (184), Expect = 2e-17
 Identities = 18/130 (13%), Positives = 44/130 (33%), Gaps = 14/130 (10%)

Query: 67  KVSKGQAPPSFTLKDQEGRNVSLSKFKGKPVVVYFYPADETPGCTKQACAFRDSYEKFKK 126
            V+ G   P       +    S     G+  ++ F+ A +      +     +   KF  
Sbjct: 6   GVNPGDLAPRIEFLGNDA-KASFHNQLGRYTLLNFWAAYDAE-SRARNVQLANEVNKFGP 63

Query: 127 AGAEVIGISGDDS-SSHKAFAKKYRLPYTL----LSDEGNKVRKEWGVPADFFGSLPGRQ 181
               +  IS D+  S      K  +L  +        + +++ K++ +           +
Sbjct: 64  DKIAMCSISMDEKESIFTETVKIDKLDLSTQFHEGLGKESELYKKYDL-----RKGF--K 116

Query: 182 TYILDKNGVV 191
            ++++  GV+
Sbjct: 117 NFLINDEGVI 126

>1jfu_A Thiol:disulfide interchange protein TLPA; thioredoxin-like, double disulfide bridge, membrane protein; 1.60A {Bradyrhizobium japonicum} SCOP: c.47.1.10 Length = 186

 Score = 72.1 bits (177), Expect = 5e-16
 Identities = 31/129 (24%), Positives = 51/129 (39%), Gaps = 11/129 (8%)

Query: 68  VSKGQAPPSFTLKDQEGRNVSLSKFKGKPVVVYFYPADET--PGCTKQACAFRDSYEKFK 125
            S     P    +D +G+   LS F+GK ++V  + A  T    C K+  A  +   K  
Sbjct: 34  ASAPLKLPDLAFEDADGKPKKLSDFRGKTLLVNLW-A--TWCVPCRKEMPALDELQGKLS 90

Query: 126 KAGAEVIGISGDDSSSHK--AFAKKYRLPY-TLLSDEGNKVRKEWGVPADFFGSLPGRQT 182
               EV+ I+ D     K   F K+  L      +D+  KV ++        G +P   +
Sbjct: 91  GPNFEVVAINIDTRDPEKPKTFLKEANLTRLGYFNDQKAKVFQDLKAIGRALG-MP--TS 147

Query: 183 YILDKNGVV 191
            ++D  G  
Sbjct: 148 VLVDPQGCE 156

>3ia1_A THIO-disulfide isomerase/thioredoxin; oxidoreductase, PSI-2, NYSGXRC, structu genomics, protein structure initiative; 1.76A {Thermus thermophilus} Length = 154

 Score = 70.1 bits (172), Expect = 1e-15
 Identities = 29/139 (20%), Positives = 54/139 (38%), Gaps = 20/139 (14%)

Query: 63  SISAKVSKGQAPPSFTLKDQEGRNVSLSKFKGKPVVVYFYPADET--PGCTKQACAFRDS 120
           S++ K   G+  P F L D +G+ V+ +      V+V++  A  +    C  +       
Sbjct: 2   SLAVKP--GEPLPDFLLLDPKGQPVTPATVSKPAVIVFW--A--SWCTVCKAEFPGLHRV 55

Query: 121 YEKFKKAGAEVIGISGDDSSSH-KAFAKKYRLPYTLLS---DEGNKVRKEWGVPADFFGS 176
            E+       VI     D+      + K Y     LL+   D  ++V   + V       
Sbjct: 56  AEETGV-PFYVISREPRDTREVVLEYMKTYPRFIPLLASDRDRPHEVAARFKVLG----- 109

Query: 177 LPGRQTYILDKNGVVQLIY 195
            P   T+++D+ G V  ++
Sbjct: 110 QP--WTFVVDREGKVVALF 126

>1o8x_A Tryparedoxin, TRYX, TXNI; tryparedoxin-I, synchrotron radiation, disulfide bonds tryparedoxin, thioredoxin, trypanosome; 1.3A {Crithidia fasciculata} SCOP: c.47.1.10 PDB: 1okd_A 1qk8_A 1o85_A 1o8w_A 1o7u_A 1ezk_A 1ewx_A Length = 146

 Score = 67.8 bits (166), Expect = 7e-15
 Identities = 26/124 (20%), Positives = 44/124 (35%), Gaps = 14/124 (11%)

Query: 71  GQAPPSFTLKDQEGRNVSLSKFKGKPVVVYFYPADETPGCTKQACAFRDSYEKFKKA-GA 129
            +  P      +    V +    GK V  YF  A   P          + Y+KF ++   
Sbjct: 5   DKYLPGIEKLRRGDGEVEVKSLAGKLVFFYFS-ASWCPPARGFTPQLIEFYDKFHESKNF 63

Query: 130 EVIGISGDDSSSH--KAFAKK--YRLPYTLLSDEGNKVRKEWGVPADFFGSLPGRQTYIL 185
           EV+  + D+        FAK     +P+   S+   K+ K + V      S+P      +
Sbjct: 64  EVVFCTWDEEEDGFAGYFAKMPWLAVPF-AQSEAVQKLSKHFNV-----ESIP--TLIGV 115

Query: 186 DKNG 189
           D + 
Sbjct: 116 DADS 119

>1o73_A Tryparedoxin; electron transport, trypanosomatid, thioredoxin; 2.28A {Trypanosoma brucei brucei} SCOP: c.47.1.10 Length = 144

 Score = 66.9 bits (164), Expect = 2e-14
 Identities = 32/131 (24%), Positives = 49/131 (37%), Gaps = 28/131 (21%)

Query: 71  GQAPPSFTLKDQEGRNVSLSKFKGKPVVVYFYPA-------DETPGCTKQACAFRDSYEK 123
            +  P  T    +   VSL    GK V +YF  A         TP          + YEK
Sbjct: 5   AKYLPGATNLLSKSGEVSLGSLVGKTVFLYFS-ASWCPPCRGFTP-------VLAEFYEK 56

Query: 124 FKKA-GAEVIGISGDDSSS--HKAFAKK--YRLPYTLLSDEGNKVRKEWGVPADFFGSLP 178
              A   EV+ IS D++ S  H  + K     LP+       +++ K +GV      S+P
Sbjct: 57  HHVAKNFEVVLISWDENESDFHDYYGKMPWLALPF-DQRSTVSELGKTFGV-----ESIP 110

Query: 179 GRQTYILDKNG 189
                 ++ + 
Sbjct: 111 --TLITINADT 119

>2lus_A Thioredoxion; CR-Trp16, oxidoreductase; NMR {Carcinoscorpius rotundicauda} Length = 143

 Score = 65.9 bits (161), Expect = 4e-14
 Identities = 21/125 (16%), Positives = 41/125 (32%), Gaps = 16/125 (12%)

Query: 75  PSFTLKDQEGRNVSLSKF--KGKPVVVYFYPADETPGCTKQACAFRDSYEKFKKAGA--E 130
               L  +    V+ ++       +  YF  A   P C        D Y +     A  E
Sbjct: 5   QGIKLVKKNRCEVNANEALKDKDIIGFYFS-AHWCPPCRGFTPILADMYSELVDDSAPFE 63

Query: 131 VIGISGDDS-SSHKAFAKKYRLPYTLLS---DEGNKVRKEWGVPADFFGSLPGRQTYILD 186
           +I +S D S      +  +    +  +       + V  ++G+       +P     I+ 
Sbjct: 64  IIFVSSDRSEDDMFQYMMESHGDWLAIPYRSGPASNVTAKYGI-----TGIP--ALVIVK 116

Query: 187 KNGVV 191
           K+G +
Sbjct: 117 KDGTL 121

>1i5g_A Tryparedoxin II; electron transport; HET: TS5; 1.40A {Crithidia fasciculata} SCOP: c.47.1.10 PDB: 1o6j_A 1o81_A 1oc8_A 1oc9_B 1fg4_A 1oc9_A Length = 144

 Score = 59.0 bits (143), Expect = 2e-11
 Identities = 26/127 (20%), Positives = 40/127 (31%), Gaps = 14/127 (11%)

Query: 69  SKGQAPPSFTLK--DQEGRNVSLSKFKGKPVVVYFYPADETPGCTKQACAFRDSYEKFK- 125
           S  +    ++         +++L    GK V  YF  A   P          D Y+    
Sbjct: 1   SGLKKFFPYSTNVLKGAAADIALPSLAGKTVFFYFS-ASWCPPSRAFTPQLIDFYKAHAE 59

Query: 126 KAGAEVIGISGDDS-SSHKAFAKKYRLPYTLLSDEGNKVRKEWGVPADFFG--SLPGRQT 182
           K   EV+ IS D+S    K +  K         D     RK        F   S+P    
Sbjct: 60  KKNFEVMLISWDESAEDFKDYYAKMPWLALPFED-----RKGMEFLTTGFDVKSIP--TL 112

Query: 183 YILDKNG 189
             ++ + 
Sbjct: 113 VGVEADS 119

>3s9f_A Tryparedoxin; thioredoxin fold, disulfide reductase, electron transport; 1.80A {Leishmania major} Length = 165

 Score = 58.3 bits (141), Expect = 4e-11
 Identities = 23/126 (18%), Positives = 40/126 (31%), Gaps = 14/126 (11%)

Query: 69  SKGQAPPSFTLKDQEGRNVSLSKFKGKPVVVYFYPADETPGCTKQACAFRDSYEKFK-KA 127
              +         ++     +    GK V  YF  A   P C        + YEK     
Sbjct: 23  GVAKHLGEALKLRKQADTADMDSLSGKTVFFYFS-ASWCPPCRGFTPQLVEFYEKHHDSK 81

Query: 128 GAEVIGISGDDSSSH--KAFAKK--YRLPYTLLSDEGNKVRKEWGVPADFFGSLPGRQTY 183
             E+I  S D+        +AK     +P+    +    + K++ V      S+P     
Sbjct: 82  NFEIILASWDEEEDDFNAYYAKMPWLSIPF-ANRNIVEALTKKYSV-----ESIP--TLI 133

Query: 184 ILDKNG 189
            L+ + 
Sbjct: 134 GLNADT 139

>2cvb_A Probable thiol-disulfide isomerase/thioredoxin; redox protein, structural genomics, riken struc genomics/proteomics initiative, RSGI; 1.80A {Thermus thermophilus} SCOP: c.47.1.10 PDB: 2ywo_A Length = 188

 Score = 54.7 bits (132), Expect = 1e-09
 Identities = 24/140 (17%), Positives = 46/140 (32%), Gaps = 37/140 (26%)

Query: 71  GQAPPSFTLKDQEGRNVSLSKFKGKPVVVYFYPADETPGCTKQACAFRDSYE-------K 123
                   L D  G    LS+F    + V F        C    C +            +
Sbjct: 10  ESPLIDAELPDPRGGRYRLSQFHEPLLAVVFM-------CNH--CPYVKGSIGELVALAE 60

Query: 124 FKKAGAEVIGISGDDSSSH--------KAFAKKYRLPYTLLSDEGNKVRKEWGV---PAD 172
             +     +GI+ +D   +         AFA+++ + +  L DE  +V K +     P +
Sbjct: 61  RYRGKVAFVGINANDYEKYPEDAPEKMAAFAEEHGIFFPYLLDETQEVAKAYRALRTP-E 119

Query: 173 FFGSLPGRQTYILDKNGVVQ 192
            F         + D+  +++
Sbjct: 120 VF---------LFDERRLLR 130

>3u5r_E Uncharacterized protein; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, hypothetical protein; 2.05A {Sinorhizobium meliloti} Length = 218

 Score = 51.3 bits (123), Expect = 3e-08
 Identities = 36/156 (23%), Positives = 57/156 (36%), Gaps = 26/156 (16%)

Query: 71  GQAPPSFTLKDQEGRNVSLSKFKGKPVVVYFYPADETPGCTKQACAFRDSYEKFKKAGAE 130
           G     F L D  G   +L++FK  P ++  + ++  P       A       +   G  
Sbjct: 35  GTRAADFVLPDAGGNLFTLAEFKDSPALLVAFISNRCPFVVLIREALAKFAGDYAGQGLA 94

Query: 131 VIGISGDDSSSH--------KAFAKKYRLPYTLLSDEGNKVRKEWGV---PADFFGSLPG 179
           V+ I+ +D+ +          A  K Y   +  L D    V K +G    P DFF     
Sbjct: 95  VVAINSNDAQAFPEETLERVGAEVKAYGYGFPYLKDASQSVAKAYGAACTP-DFFL---- 149

Query: 180 RQTYILDKNGVVQLIYNNQF---QPEKHIDETLKFL 212
                 D+    +L+Y+ QF   +P    D T   L
Sbjct: 150 -----YDRER--RLVYHGQFDDARPGNGKDVTGADL 178

>2ywi_A Hypothetical conserved protein; uncharacterized conserved protein, NPPSFA, national project protein structural and functional analyses; 1.60A {Geobacillus kaustophilus} Length = 196

 Score = 49.8 bits (119), Expect = 8e-08
 Identities = 33/166 (19%), Positives = 57/166 (34%), Gaps = 45/166 (27%)

Query: 71  GQAPPSFTLKD-QEGRNVSLSKFKG-KPVVVYFYPADETPGCTKQACAFRDSYE------ 122
           G+  P F L +  +G  V L   K     V+ F        C    C F    +      
Sbjct: 21  GKQAPPFALTNVIDGNVVRLEDVKSDAATVIMFI-------CNH--CPFVKHVQHELVRL 71

Query: 123 --KFKKAGAEVIGISGDDSSSH--------KAFAKKYRLPYTLLSDEGNKVRKEWG---V 169
              +   G   + I+ +D+  +        K  A++   P+  L DE  +V K +     
Sbjct: 72  ANDYMPKGVSFVAINSNDAEQYPEDSPENMKKVAEELGYPFPYLYDETQEVAKAYDAACT 131

Query: 170 PADFFGSLPGRQTYILDKNGVVQLIYNNQF---QPEKHIDETLKFL 212
           P DF+           D++   + +Y  Q    +P   I  T + +
Sbjct: 132 P-DFYI---------FDRDL--KCVYRGQLDDSRPNNGIPVTGESI 165

>3me7_A Putative uncharacterized protein; electron transfer protein, electron transport, structural GE PSI-2, protein structure initiative; 1.50A {Aquifex aeolicus} PDB: 3me8_A Length = 170

 Score = 49.0 bits (117), Expect = 1e-07
 Identities = 28/162 (17%), Positives = 44/162 (27%), Gaps = 28/162 (17%)

Query: 74  PPSFTLKDQEGRNVSLSKFKGKPVVVYF-YPADET--PG-CTKQACAFRDSYEKFKKAGA 129
           P   TL D  G    L   KGKP+++   Y    T     C     +      K    G 
Sbjct: 8   PGDITLVDSYGNEFQLKNLKGKPIILSPIY----THCRAACPLITKSLLKVIPKLGTPGK 63

Query: 130 EV--IGISGD--DSSSH-KAFAKKYRLPY------TLLSDEG-NKVRKEWGV-----PAD 172
           +   I  + D  D+    K F K+Y +           + E   K+             D
Sbjct: 64  DFWVITFTFDPKDTLEDIKRFQKEYGIDGKGWKVVKAKTSEDLFKLLDAIDFRFMTAGND 123

Query: 173 FFGSLPGRQTYILDKNGVVQLIYNNQFQPEKHIDETLKFLQS 214
           F          +L     ++                L+  + 
Sbjct: 124 FIHPN---VVVVLSPELQIKDYIYGVNYNYLEFVNALRLARG 162

>3kh7_A Thiol:disulfide interchange protein DSBE; TRX-like, thiol-disulfide exchange, cell inner membrane, CYT C-type biogenesis, disulfide bond; 1.75A {Pseudomonas aeruginosa} PDB: 3kh9_A Length = 176

 Score = 46.5 bits (111), Expect = 8e-07
 Identities = 33/150 (22%), Positives = 60/150 (40%), Gaps = 37/150 (24%)

Query: 71  GQAPPSFTLKD--QEGRNVSLSKFKGKPVVVYF-----YP-ADETPGCTKQACAFRDSYE 122
           G+  P+F L       R ++ +  KGKP +V            E P              
Sbjct: 33  GKPFPAFDLPSVQDPARRLTEADLKGKPALVNVWGTWCPSCRVEHP-----------ELT 81

Query: 123 KFKKAGAEVIGIS-GDDSSSHKAFAKKYRLPYTL-LSDEGNKVRKEWGVPADFFGSLPGR 180
           +  + G  + GI+  DD+++   +  +   PY L +SD    +  + GV    +G  P  
Sbjct: 82  RLAEQGVVIYGINYKDDNAAAIKWLNELHNPYLLSISDADGTLGLDLGV----YG-AP-- 134

Query: 181 QTYILDKNGVVQL---------IYNNQFQP 201
           +TY++DK G+++          ++  Q  P
Sbjct: 135 ETYLIDKQGIIRHKIVGVVDQKVWREQLAP 164

>2xhf_A Peroxiredoxin 5; oxidoreductase, antioxidant enzymes; 1.30A {Alvinella pompejana} Length = 171

 Score = 45.3 bits (108), Expect = 2e-06
 Identities = 13/78 (16%), Positives = 28/78 (35%), Gaps = 2/78 (2%)

Query: 57  STSFKTSISAKVSKGQAPPSFTLK-DQEGRNVSLSK-FKGKPVVVYFYPADETPGCTKQA 114
            +       + +  G   P   +  D   ++  +   F+G+  +++       PG     
Sbjct: 3   GSHHHHHHGSPIKVGDIIPDVLVYEDVPSKSFPIHDVFRGRKGILFSVVGAFVPGSNNHI 62

Query: 115 CAFRDSYEKFKKAGAEVI 132
             +   Y+KFK+ G   I
Sbjct: 63  PEYLSLYDKFKEEGYHTI 80

>1xzo_A BSSCO, hypothetical protein YPMQ; thioredoxin-like fold, structural genomics, montreal-kingsto bacterial structural genomics initiative, BSGI; 1.70A {Bacillus subtilis} SCOP: c.47.1.10 PDB: 1on4_A Length = 174

 Score = 43.9 bits (104), Expect = 6e-06
 Identities = 11/27 (40%), Positives = 17/27 (62%)

Query: 75  PSFTLKDQEGRNVSLSKFKGKPVVVYF 101
             FT ++Q+G+NVSL   KG+  +  F
Sbjct: 14  EPFTFQNQDGKNVSLESLKGEVWLADF 40

>2b7k_A SCO1 protein; metallochaperone, cytochrome C oxidase, metal binding protein; 1.80A {Saccharomyces cerevisiae} SCOP: c.47.1.10 PDB: 2b7j_A Length = 200

 Score = 41.6 bits (98), Expect = 4e-05
 Identities = 12/40 (30%), Positives = 19/40 (47%), Gaps = 4/40 (10%)

Query: 66  AKVSKGQAPPS----FTLKDQEGRNVSLSKFKGKPVVVYF 101
           A+ ++G   PS    F L+D  G   +     GK  ++YF
Sbjct: 9   AEANRGYGKPSLGGPFHLEDMYGNEFTEKNLLGKFSIIYF 48

>2ggt_A SCO1 protein homolog, mitochondrial; copper chaperone, Cu-binding protein, mitochondrial assembly factor, redox, nickel, disuplhide, mitochondrion; 2.40A {Homo sapiens} SCOP: c.47.1.10 PDB: 2gqk_A 2gql_A 2gqm_A 2gt5_A 2gt6_A 2gvp_A 2hrf_A 2hrn_A 1wp0_A Length = 164

 Score = 41.1 bits (97), Expect = 5e-05
 Identities = 6/26 (23%), Positives = 13/26 (50%)

Query: 76  SFTLKDQEGRNVSLSKFKGKPVVVYF 101
            F+L    G   +   + G+ +++YF
Sbjct: 5   PFSLTTHTGERKTDKDYLGQWLLIYF 30

>2rli_A SCO2 protein homolog, mitochondrial; copper protein, thioredoxin fold, metal transport, structural genomics, spine2-complexes; NMR {Homo sapiens} Length = 171

 Score = 40.8 bits (96), Expect = 8e-05
 Identities = 10/25 (40%), Positives = 15/25 (60%)

Query: 77  FTLKDQEGRNVSLSKFKGKPVVVYF 101
           F L D  GR    + F+G+ V++YF
Sbjct: 9   FHLLDHRGRARCKADFRGQWVLMYF 33

>2b1k_A Thiol:disulfide interchange protein DSBE; C-terminal thioredoxin-like domain, N-terminal beta-sheet, fingerprint rigion, oxidoreductase; 1.90A {Escherichia coli} PDB: 3k8n_A 2g0f_A 1z5y_E 2b1l_A Length = 168

 Score = 39.6 bits (93), Expect = 2e-04
 Identities = 31/148 (20%), Positives = 58/148 (39%), Gaps = 32/148 (21%)

Query: 71  GQAPPSFTLKDQEGRNVSLSK---FKGKPVVVYFYPADETPG--CTKQACAFRDSY-EKF 124
           G+  P F L+  +            +GKPV++  +         C    C     Y  + 
Sbjct: 25  GKPVPKFRLESLDNPGQFYQADVLTQGKPVLLNVW------ATWCP--TCRAEHQYLNQL 76

Query: 125 KKAGAEVIGIS-GDDSSSHKAFAKKYRLPYTL-LSDEGNKVRKEWGVPADFFGSLPGRQT 182
              G  V+G++  DD     ++ K+   PY L L D    +  + GV    +G  P  +T
Sbjct: 77  SAQGIRVVGMNYKDDRQKAISWLKELGNPYALSLFDGDGMLGLDLGV----YG-AP--ET 129

Query: 183 YILDKNGVV---------QLIYNNQFQP 201
           +++D NG++           ++  + +P
Sbjct: 130 FLIDGNGIIRYRHAGDLNPRVWEEEIKP 157

>1kng_A Thiol:disulfide interchange protein CYCY; thioredoxin fold, cytochrome C maturation, atomic resolution oxidoreductase; 1.14A {Bradyrhizobium japonicum} SCOP: c.47.1.10 Length = 156

 Score = 38.4 bits (90), Expect = 5e-04
 Identities = 32/165 (19%), Positives = 61/165 (36%), Gaps = 44/165 (26%)

Query: 71  GQAPPSFTLKD--------QEGRNVSLSKFKGKPVVVYF-----YP-ADETPGCTKQACA 116
           G+  P   L           +   +  + FKGK  +V        P  DE P  T+    
Sbjct: 11  GRPAPQTALPPLEGLQADNVQVPGLDPAAFKGKVSLVNVWASWCVPCHDEAPLLTELG-- 68

Query: 117 FRDSYEKFKKAGAEVIGIS-GDDSSSHKAFAKKYRLPYTL-LSDEGNKVRKEWGVPADFF 174
                   K    +++GI+  D + + + F  +Y  P+     D   +   EWGV    +
Sbjct: 69  --------KDKRFQLVGINYKDAADNARRFLGRYGNPFGRVGVDANGRASIEWGV----Y 116

Query: 175 GSLPGRQTYILDKNGVVQL---------IYNNQFQPEKHIDETLK 210
           G +P  +T+++ + G +              +   P+  +++ LK
Sbjct: 117 G-VP--ETFVVGREGTIVYKLVGPITPDNLRSVLLPQ--MEKALK 156

>2k6v_A Putative cytochrome C oxidase assembly protein; thioredoxin fold, electron transfer protein, metal binding protein, electron transport; NMR {Thermus thermophilus} Length = 172

 Score = 38.1 bits (89), Expect = 6e-04
 Identities = 11/28 (39%), Positives = 18/28 (64%), Gaps = 1/28 (3%)

Query: 74  PPSFTLKDQEGRNVSLSKFKGKPVVVYF 101
           P  F L+  +G  V LS+F+ K V+++F
Sbjct: 16  PVDFALEGPQGP-VRLSQFQDKVVLLFF 42

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	215
4g2e_A	157	Peroxiredoxin; redox protein, structural genomics,	100.0
3drn_A	161	Peroxiredoxin, bacterioferritin comigratory prote	100.0
4gqc_A	164	Thiol peroxidase, peroxiredoxin Q; CXXXXC motif, f	100.0
3gkn_A	163	Bacterioferritin comigratory protein; BCP, PRX, at	99.98
3ixr_A	179	Bacterioferritin comigratory protein; alpha beta p	99.97
3sbc_A	216	Peroxiredoxin TSA1; alpha-beta fold, peroxidase, c	99.97
1psq_A	163	Probable thiol peroxidase; structural genomics, NY	99.97
3p7x_A	166	Probable thiol peroxidase; thioredoxin fold, oxido	99.97
1xvw_A	160	Hypothetical protein RV2238C/MT2298; thioredoxin f	99.97
2c0d_A	221	Thioredoxin peroxidase 2; peroxiredoxin, 2-Cys, th	99.97
3mng_A	173	Peroxiredoxin-5, mitochondrial; peroxidase, PRXV,	99.97
3tue_A	219	Tryparedoxin peroxidase; thioredoxin fold, peroxir	99.97
1n8j_A	186	AHPC, alkyl hydroperoxide reductase C22 protein; p	99.97
1q98_A	165	Thiol peroxidase, TPX; structural genomics, NYSGXR	99.97
2pn8_A	211	Peroxiredoxin-4; thioredoxin, oxidoreductase, stru	99.97
1tp9_A	162	Peroxiredoxin, PRX D (type II); oligomer, thioredo	99.97
2i81_A	213	2-Cys peroxiredoxin; structural genomics consortiu	99.97
3zrd_A	200	Thiol peroxidase; oxidoreductase, 2Cys peroxiredox	99.97
2yzh_A	171	Probable thiol peroxidase; redox protein, antioxid	99.97
1uul_A	202	Tryparedoxin peroxidase homologue; peroxiredoxin,	99.97
1we0_A	187	Alkyl hydroperoxide reductase C; peroxiredoxin, AH	99.97
3tjj_A	254	Peroxiredoxin-4; thioredoxin fold, sulfenylation,	99.97
3qpm_A	240	Peroxiredoxin; oxidoreductase, thioredoxin fold, p	99.97
3ztl_A	222	Thioredoxin peroxidase; oxidoreductase, reductase,	99.97
1qmv_A	197	Human thioredoxin peroxidase-B; peroxiredoxin, sul	99.97
2bmx_A	195	Alkyl hydroperoxidase C; peroxiredoxin, antioxidan	99.97
2h01_A	192	2-Cys peroxiredoxin; thioredoxin peroxidase, struc	99.97
2wfc_A	167	Peroxiredoxin 5, PRDX5; oxidoreductase, antioxidan	99.97
1zye_A	220	Thioredoxin-dependent peroxide reductase; catenane	99.97
3uma_A	184	Hypothetical peroxiredoxin protein; nysgrc, PSI bi	99.97
2v2g_A	233	Peroxiredoxin 6; oxidoreductase, antioxidant enzym	99.96
2a4v_A	159	Peroxiredoxin DOT5; yeast nuclear thiol peroxidase	99.96
1zof_A	198	Alkyl hydroperoxide-reductase; decamer, toroide-sh	99.96
1prx_A	224	HORF6; peroxiredoxin, hydrogen peroxide, redox reg	99.96
3eur_A	142	Uncharacterized protein; PSI2,MCSG, conserved prot	99.96
3fw2_A	150	Thiol-disulfide oxidoreductase; structural genomic	99.96
3ewl_A	142	Uncharacterized conserved protein BF1870; alpha-be	99.96
3keb_A	224	Probable thiol peroxidase; structural genomics, AP	99.96
3gl3_A	152	Putative thiol:disulfide interchange protein DSBE;	99.96
1xvq_A	175	Thiol peroxidase; thioredoxin fold, structural gen	99.96
3eyt_A	158	Uncharacterized protein SPOA0173; thioredoxin-like	99.96
3hcz_A	148	Possible thiol-disulfide isomerase; APC61559.2, cy	99.96
2jsy_A	167	Probable thiol peroxidase; solution structure, ant	99.96
3lor_A	160	Thiol-disulfide isomerase and thioredoxins; PSI, M	99.96
4fo5_A	143	Thioredoxin-like protein; AHPC/TSA family protein,	99.96
2lrn_A	152	Thiol:disulfide interchange protein; structural ge	99.96
3lwa_A	183	Secreted thiol-disulfide isomerase; thioredoxin, P	99.96
1nm3_A	241	Protein HI0572; hybrid, peroxiredoxin, glutaredoxi	99.96
2v1m_A	169	Glutathione peroxidase; selenium, selenocysteine,	99.96
3u5r_E	218	Uncharacterized protein; structural genomics, PSI-	99.96
1xcc_A	220	1-Cys peroxiredoxin; unknown function, structural	99.96
3kcm_A	154	Thioredoxin family protein; SGX, thioredoxin prote	99.96
2p5q_A	170	Glutathione peroxidase 5; thioredoxin fold, oxidor	99.96
1xzo_A	174	BSSCO, hypothetical protein YPMQ; thioredoxin-like	99.96
2f9s_A	151	Thiol-disulfide oxidoreductase RESA; thioredoxin-l	99.96
2gs3_A	185	PHGPX, GPX-4, phospholipid hydroperoxide glutathio	99.95
3a2v_A	249	Probable peroxiredoxin; thioredoxin peroxidase, hy	99.95
3hdc_A	158	Thioredoxin family protein; ATCC53774, DSM 7210, ,	99.95
3kh7_A	176	Thiol:disulfide interchange protein DSBE; TRX-like	99.95
2l5o_A	153	Putative thioredoxin; structural genomics, unknown	99.95
2lrt_A	152	Uncharacterized protein; structural genomics, thio	99.95
1jfu_A	186	Thiol:disulfide interchange protein TLPA; thioredo	99.95
3kij_A	180	Probable glutathione peroxidase 8; human PDI-perox	99.95
3or5_A	165	Thiol:disulfide interchange protein, thioredoxin p	99.95
2ywi_A	196	Hypothetical conserved protein; uncharacterized co	99.95
2vup_A	190	Glutathione peroxidase-like protein; oxidoreductas	99.95
2obi_A	183	PHGPX, GPX-4, phospholipid hydroperoxide glutathio	99.95
2cvb_A	188	Probable thiol-disulfide isomerase/thioredoxin; re	99.95
3fkf_A	148	Thiol-disulfide oxidoreductase; structural genomic	99.95
3erw_A	145	Sporulation thiol-disulfide oxidoreductase A; thio	99.95
2f8a_A	208	Glutathione peroxidase 1; thioredoxin fold, struct	99.95
2b5x_A	148	YKUV protein, TRXY; thioredoxin-like, oxidoreducta	99.95
4f82_A	176	Thioredoxin reductase; structural genomics, niaid,	99.95
2p31_A	181	CL683, glutathione peroxidase 7; thioredoxin fold,	99.95
2pwj_A	171	Mitochondrial peroxiredoxin; alpha and beta protei	99.95
2i3y_A	215	Epididymal secretory glutathione peroxidase; thior	99.94
4eo3_A	322	Bacterioferritin comigratory protein/NADH dehydro;	99.94
2xhf_A	171	Peroxiredoxin 5; oxidoreductase, antioxidant enzym	99.94
3dwv_A	187	Glutathione peroxidase-like protein; alpha beta, 3	99.94
2ggt_A	164	SCO1 protein homolog, mitochondrial; copper chaper	99.94
3ia1_A	154	THIO-disulfide isomerase/thioredoxin; oxidoreducta	99.94
2b7k_A	200	SCO1 protein; metallochaperone, cytochrome C oxida	99.94
3cmi_A	171	Peroxiredoxin HYR1; thioredoxin-like fold, oxidore	99.94
3raz_A	151	Thioredoxin-related protein; structural genomics,	99.94
3me7_A	170	Putative uncharacterized protein; electron transfe	99.94
2r37_A	207	Glutathione peroxidase 3; plasma, structural genom	99.94
2lja_A	152	Putative thiol-disulfide oxidoreductase; structura	99.94
1zzo_A	136	RV1677; thioredoxin fold, structural genomics, PSI	99.94
1xiy_A	182	Peroxiredoxin, pfaop; alpha-aneurysm, thioredoxin	99.94
2hyx_A	352	Protein DIPZ; thioredoxin fold, jelly-roll, struct	99.94
2rli_A	171	SCO2 protein homolog, mitochondrial; copper protei	99.94
3ha9_A	165	Uncharacterized thioredoxin-like protein; PSI, MCS	99.94
1lu4_A	136	Soluble secreted antigen MPT53; thioredoxin-like f	99.94
2ls5_A	159	Uncharacterized protein; structural genomics, unkn	99.88
4evm_A	138	Thioredoxin family protein; structural genomics, n	99.93
2b1k_A	168	Thiol:disulfide interchange protein DSBE; C-termin	99.93
4hde_A	170	SCO1/SENC family lipoprotein; structural genomics,	99.93
2k6v_A	172	Putative cytochrome C oxidase assembly protein; th	99.93
1kng_A	156	Thiol:disulfide interchange protein CYCY; thioredo	99.92
2h30_A	164	Thioredoxin, peptide methionine sulfoxide reductas	99.91
1i5g_A	144	Tryparedoxin II; electron transport; HET: TS5; 1.4	99.91
1o8x_A	146	Tryparedoxin, TRYX, TXNI; tryparedoxin-I, synchrot	99.9
3s9f_A	165	Tryparedoxin; thioredoxin fold, disulfide reductas	99.88
1o73_A	144	Tryparedoxin; electron transport, trypanosomatid,	99.88
2lus_A	143	Thioredoxion; CR-Trp16, oxidoreductase; NMR {Carci	99.8
2l57_A	126	Uncharacterized protein; structural genomics, unkn	99.7
2ju5_A	154	Thioredoxin disulfide isomerase; protein, oxidored	99.67
2fwh_A	134	Thiol:disulfide interchange protein DSBD; thioredo	99.66
3hxs_A	141	Thioredoxin, TRXP; electron transport; 2.00A {Bact	99.64
3ul3_B	128	Thioredoxin, thioredoxin-2; PTEX, oxidoreductase;	99.63
3fk8_A	133	Disulphide isomerase; APC61824.1, xylella fastidio	99.59
4h86_A	199	Peroxiredoxin type-2; oxidoreductase; 2.00A {Sacch	99.54
3p2a_A	148	Thioredoxin 2, putative thioredoxin-like protein;	99.54
2kuc_A	130	Putative disulphide-isomerase; structural genomics	99.53
3zzx_A	105	Thioredoxin; oxidoreductase; 1.88A {Litopenaeus va	99.52
2pu9_C	111	TRX-F, thioredoxin F-type, chloroplast; protein-pr	99.51
3f9u_A	172	Putative exported cytochrome C biogenesis-related;	99.49
3qfa_C	116	Thioredoxin; protein-protein complex, rossmann fol	99.47
2voc_A	112	Thioredoxin; electron transport, homodimer, disulf	99.46
2l5l_A	136	Thioredoxin; structural genomics, electron transpo	99.46
3f3q_A	109	Thioredoxin-1; His TAG, electron transport, cytopl	99.46
3cxg_A	133	Putative thioredoxin; malaria, structural GEN oxid	99.46
1faa_A	124	Thioredoxin F; electron transport; 1.85A {Spinacia	99.45
1t00_A	112	Thioredoxin, TRX; redox regulation, multifunction	99.45
3gix_A	149	Thioredoxin-like protein 4B; PRE-mRNA splicing, TX	99.45
2vlu_A	122	Thioredoxin, thioredoxin H isoform 2.; oxidoreduct	99.44
1z6n_A	167	Hypothetical protein PA1234; alpha-beta-alpha sand	99.43
1x5d_A	133	Protein disulfide-isomerase A6; PDIA6, ERP5, TXNDC	99.43
1dby_A	107	Chloroplast thioredoxin M CH2; thioredoxin CH2, ch	99.43
1w4v_A	119	Thioredoxin, mitochondrial; antioxidant enzyme, mi	99.43
3tco_A	109	Thioredoxin (TRXA-1); disulfide oxidoreductase, ox	99.43
2trx_A	108	Thioredoxin; electron transport; 1.68A {Escherichi	99.43
3die_A	106	Thioredoxin, TRX; electron transport, SWAP domain,	99.42
1nsw_A	105	Thioredoxin, TRX; thermostability, electron transp	99.42
1xfl_A	124	Thioredoxin H1; AT3G51030, structural genomics, pr	99.42
2av4_A	160	Thioredoxin-like protein 4A (DIM1); U5 snRNP-SPECI	99.42
2ppt_A	155	Thioredoxin-2; thiredoxin, zinc finger, oxidoreduc	99.42
2o8v_B	128	Thioredoxin 1; disulfide crosslinked complex, oxid	99.42
3d6i_A	112	Monothiol glutaredoxin-3; thioredoxin-like, electr	99.42
1ep7_A	112	Thioredoxin CH1, H-type; electron transport; 2.10A	99.42
1thx_A	115	Thioredoxin, thioredoxin 2; oxido-reductase, elect	99.41
2dml_A	130	Protein disulfide-isomerase A6; thioredoxin domain	99.41
3gnj_A	111	Thioredoxin domain protein; APC92103, STR genomics	99.4
2i4a_A	107	Thioredoxin; acidophIle, disulfide exchange, oxido	99.4
4euy_A	105	Uncharacterized protein; structural genomics, PSI-	99.4
3d22_A	139	TRXH4, thioredoxin H-type; electron transport, cyt	99.39
2wz9_A	153	Glutaredoxin-3; protein binding; 1.55A {Homo sapie	99.39
3hz4_A	140	Thioredoxin; NYSGXRC, PSI-II, reduced form, protei	99.39
2dj3_A	133	Protein disulfide-isomerase A4; protein ERP-72, ER	99.39
2j23_A	121	Thioredoxin; immune protein, autoreactivity, cross	99.39
2oe3_A	114	Thioredoxin-3; electron transport, alpha/beta sand	99.38
1sen_A	164	Thioredoxin-like protein P19; endoplasmic reticulu	99.38
2e0q_A	104	Thioredoxin; electron transport; 1.49A {Sulfolobus	99.38
2yzu_A	109	Thioredoxin; redox protein, electron transport, st	99.38
2dj1_A	140	Protein disulfide-isomerase A4; protein ERP-72, ER	99.38
1r26_A	125	Thioredoxin; redox-active disulfide, electron tran	99.38
1gh2_A	107	Thioredoxin-like protein; redox-active center, ele	99.38
1fb6_A	105	Thioredoxin M; electron transport; 2.10A {Spinacia	99.38
3m9j_A	105	Thioredoxin; oxidoreductase; 1.10A {Homo sapiens}	99.38
1x5e_A	126	Thioredoxin domain containing protein 1; TMX, TXND	99.38
2lst_A	130	Thioredoxin; structural genomics, NEW YORK structu	99.08
2f51_A	118	Thioredoxin; electron transport; 1.90A {Trichomona	99.37
3qou_A	287	Protein YBBN; thioredoxin-like fold, tetratricopep	99.36
1syr_A	112	Thioredoxin; SGPP, structural genomics, PSI, prote	99.36
1qgv_A	142	Spliceosomal protein U5-15KD; snRNP, thioredoxin,	99.36
1ti3_A	113	Thioredoxin H, PTTRXH1; oxidoreductase; NMR {Popul	99.36
2vm1_A	118	Thioredoxin, thioredoxin H isoform 1.; oxidoreduct	99.35
3apq_A	210	DNAJ homolog subfamily C member 10; thioredoxin fo	99.35
2xc2_A	117	Thioredoxinn; oxidoreductase, protein disulfide re	99.35
2vim_A	104	Thioredoxin, TRX; thioredoxin fold, oxidoreductase	99.34
1v98_A	140	Thioredoxin; oxidoreductase, structural genomics,	99.34
1xwb_A	106	Thioredoxin; dimerization, redox regulation, THI X	99.34
2l6c_A	110	Thioredoxin; oxidoreductase; NMR {Desulfovibrio vu	99.34
2qsi_A	137	Putative hydrogenase expression/formation protein;	99.34
3h79_A	127	Thioredoxin-like protein; thioredoxin fold, cataly	99.33
3emx_A	135	Thioredoxin; structural genomics, oxidoreductase,	99.33
1zma_A	118	Bacterocin transport accessory protein; alpha-beta	99.33
3dxb_A	222	Thioredoxin N-terminally fused to PUF60(UHM); spli	99.31
2djj_A	121	PDI, protein disulfide-isomerase; thioredoxin fold	99.31
3uvt_A	111	Thioredoxin domain-containing protein 5; thioredox	99.31
2dj0_A	137	Thioredoxin-related transmembrane protein 2; AVLA2	99.31
2i1u_A	121	Thioredoxin, TRX, MPT46; redox protein, electron t	99.3
2qgv_A	140	Hydrogenase-1 operon protein HYAE; alpha-beta prot	99.3
3aps_A	122	DNAJ homolog subfamily C member 10; thioredoxin fo	99.28
3ph9_A	151	Anterior gradient protein 3 homolog; thioredoxin f	99.25
1oaz_A	123	Thioredoxin 1; immune system, antibody/complex, an	99.25
3idv_A	241	Protein disulfide-isomerase A4; thioredoxin-like f	99.25
2dbc_A	135	PDCL2, unnamed protein product; phosducin-like pro	99.23
3ira_A	173	Conserved protein; methanosarcina mazei,structural	99.21
3t58_A	519	Sulfhydryl oxidase 1; oxidoreductase; HET: FAD; 2.	99.2
1wou_A	123	Thioredoxin -related protein, 14 kDa; electron tra	99.2
1nho_A	85	Probable thioredoxin; beta sheet, alpha helix, oxi	99.2
2yj7_A	106	LPBCA thioredoxin; oxidoreductase; 1.65A {Syntheti	98.83
3q6o_A	244	Sulfhydryl oxidase 1; protein disulfide isomerase,	99.16
1a8l_A	226	Protein disulfide oxidoreductase; PDI, thioredoxin	99.16
1wmj_A	130	Thioredoxin H-type; structural genomics, program f	99.14
1mek_A	120	Protein disulfide isomerase; electron transport, r	99.13
1fo5_A	85	Thioredoxin; disulfide oxidoreductase, structural	99.13
2es7_A	142	Q8ZP25_salty, putative thiol-disulfide isomerase a	99.1
3ed3_A	298	Protein disulfide-isomerase MPD1; thioredoxin-like	99.09
1a0r_P	245	Phosducin, MEKA, PP33; transducin, beta-gamma, sig	99.06
2hls_A	243	Protein disulfide oxidoreductase; thioredoxin fold	99.04
3evi_A	118	Phosducin-like protein 2; alpha beta, 3-layer(ABA)	99.03
3kp8_A	106	Vkorc1/thioredoxin domain protein; blood coagulati	99.0
3iv4_A	112	Putative oxidoreductase; APC23140, meticillin-resi	99.0
1ilo_A	77	Conserved hypothetical protein MTH895; beta-alpha-	98.99
3f8u_A	481	Protein disulfide-isomerase A3ERP57; endoplasmic r	98.97
3idv_A	241	Protein disulfide-isomerase A4; thioredoxin-like f	98.96
2trc_P	217	Phosducin, MEKA, PP33; transducin, beta-gamma, sig	98.96
2dlx_A	153	UBX domain-containing protein 7; UAS domain, prote	98.95
2r2j_A	382	Thioredoxin domain-containing protein 4; CRFS moti	98.94
3gyk_A	175	27KDA outer membrane protein; APC61738.2, siliciba	98.91
2b5e_A	504	Protein disulfide-isomerase; 2.40A {Saccharomyces	98.9
3ga4_A	178	Dolichyl-diphosphooligosaccharide-protein glycosyl	98.89
1sji_A	350	Calsequestrin 2, calsequestrin, cardiac muscle iso	98.87
3uem_A	361	Protein disulfide-isomerase; thioredoxin-like doma	98.87
3f8u_A	481	Protein disulfide-isomerase A3ERP57; endoplasmic r	98.85
3dml_A	116	Putative uncharacterized protein; thioredoxin, oxi	98.84
3apo_A	780	DNAJ homolog subfamily C member 10; PDI family, th	98.84
2ywm_A	229	Glutaredoxin-like protein; redox protein, structur	98.83
3apo_A	780	DNAJ homolog subfamily C member 10; PDI family, th	98.76
3qcp_A	470	QSOX from trypanosoma brucei (tbqsox); ERV fold, t	98.75
3hd5_A	195	Thiol:disulfide interchange protein DSBA; protein	98.74
1eej_A	216	Thiol:disulfide interchange protein; oxidoreductas	98.69
2b5e_A	504	Protein disulfide-isomerase; 2.40A {Saccharomyces	98.65
3h93_A	192	Thiol:disulfide interchange protein DSBA; disulfid	98.63
3us3_A	367	Calsequestrin-1; calcium-binding protein; 1.74A {O	98.57
1a8l_A	226	Protein disulfide oxidoreductase; PDI, thioredoxin	98.52
2djk_A	133	PDI, protein disulfide-isomerase; thioredoxin fold	98.52
2znm_A	195	Thiol:disulfide interchange protein DSBA; thioredo	98.48
1v58_A	241	Thiol:disulfide interchange protein DSBG; reduced	98.43
2ywm_A	229	Glutaredoxin-like protein; redox protein, structur	98.41
1z6m_A	175	Conserved hypothetical protein; structural genomic	98.36
2rem_A	193	Disulfide oxidoreductase; disulfide oxidoreductase	98.36
1t3b_A	211	Thiol:disulfide interchange protein DSBC; oxidored	98.34
1ttz_A	87	Conserved hypothetical protein; structural genomic	98.33
2fgx_A	107	Putative thioredoxin; NET3, NESG, GFT-glutaredoxin	98.33
2e7p_A	116	Glutaredoxin; thioredoxin fold, poplar, electron t	98.32
1hyu_A	521	AHPF, alkyl hydroperoxide reductase subunit F; thi	98.21
2qc7_A	240	ERP31, ERP28, endoplasmic reticulum protein ERP29;	98.15
2k8s_A	80	Thioredoxin; dimer, structural genomics, PSI-2, pr	98.14
1ego_A	85	Glutaredoxin; electron transport; NMR {Escherichia	98.11
1wjk_A	100	C330018D20RIK protein; glutaredoxin, thioredoxin f	98.1
3hz8_A	193	Thiol:disulfide interchange protein DSBA; thiol-ox	98.02
2c0g_A	248	ERP29 homolog, windbeutel protein; PDI-dbeta, PDI,	97.94
3l9v_A	189	Putative thiol-disulfide isomerase or thioredoxin;	97.82
3kp9_A	291	Vkorc1/thioredoxin domain protein; warfarin, disul	97.81
2hls_A	243	Protein disulfide oxidoreductase; thioredoxin fold	97.76
1h75_A	81	Glutaredoxin-like protein NRDH; electron transport	97.73
3gv1_A	147	Disulfide interchange protein; neisseria gonorrhoe	97.66
3feu_A	185	Putative lipoprotein; alpha-beta structure, struct	97.59
1r7h_A	75	NRDH-redoxin; thioredoxin, glutaredoxin, redox pro	97.55
3uem_A	361	Protein disulfide-isomerase; thioredoxin-like doma	97.5
4dvc_A	184	Thiol:disulfide interchange protein DSBA; pilus as	97.47
2ec4_A	178	FAS-associated factor 1; UAS domain, protein FAF1,	97.47
3l9s_A	191	Thiol:disulfide interchange protein; thioredoxin-f	97.41
1un2_A	197	DSBA, thiol-disulfide interchange protein; disulfi	97.4
2cq9_A	130	GLRX2 protein, glutaredoxin 2; glutathione-S-trans	97.05
2hze_A	114	Glutaredoxin-1; thioredoxin fold, arsenic, dimethy	97.03
2klx_A	89	Glutaredoxin; thioredoxin type domain, ssgcid, ele	96.96
2ht9_A	146	Glutaredoxin-2; thioredoxin fold, iron-sulfur clus	96.88
1kte_A	105	Thioltransferase; redox-active center, electron tr	96.85
3qmx_A	99	Glutaredoxin A, glutaredoxin 3; electron transport	96.75
2yan_A	105	Glutaredoxin-3; oxidoreductase; HET: GSH; 1.90A {H	96.6
1fov_A	82	Glutaredoxin 3, GRX3; active site disulfide, CIS P	96.58
2lqo_A	92	Putative glutaredoxin RV3198.1/MT3292; TRX fold, o	96.45
2khp_A	92	Glutaredoxin; thioredoxin type domain, ssgcid, ele	96.4
3f4s_A	226	Alpha-DSBA1, putative uncharacterized protein; thi	96.38
3rhb_A	113	ATGRXC5, glutaredoxin-C5, chloroplastic; thioredox	96.36
4f9z_D	227	Endoplasmic reticulum resident protein 27; thiored	96.17
3nzn_A	103	Glutaredoxin; structural genomics, PSI2, MCSG, pro	96.15
3h8q_A	114	Thioredoxin reductase 3; oxidoreductase, structura	96.15
3msz_A	89	Glutaredoxin 1; alpha-beta sandwich, center for st	95.99
3gha_A	202	Disulfide bond formation protein D; BDBD, DSBA-lik	95.89
3c1r_A	118	Glutaredoxin-1; oxidized form, oxidoreductase, cyt	95.86
3ic4_A	92	Glutaredoxin (GRX-1); structural genomics, PSI, MC	95.83
3c7m_A	195	Thiol:disulfide interchange protein DSBA-like; red	95.49
1wik_A	109	Thioredoxin-like protein 2; picot homology 2 domai	95.34
3kzq_A	208	Putative uncharacterized protein VP2116; protein w	95.11
3tdg_A	273	DSBG, putative uncharacterized protein; thioredoxi	94.77
1aba_A	87	Glutaredoxin; electron transport; HET: MES; 1.45A	94.61
2ct6_A	111	SH3 domain-binding glutamic acid-rich-like protein	94.61
3ctg_A	129	Glutaredoxin-2; reduced form, electron transport,	94.55
3fz4_A	120	Putative arsenate reductase; APC61768, structural	93.97
3l78_A	120	Regulatory protein SPX; transcription, transcripti	93.61
3bci_A	186	Disulfide bond protein A; thiol-disulfide oxidored	93.43
1z3e_A	132	Regulatory protein SPX; bacterial transcription re	93.33
2wem_A	118	Glutaredoxin-related protein 5; chromosome 14 open	93.12
3q6o_A	244	Sulfhydryl oxidase 1; protein disulfide isomerase,	93.09
3zyw_A	111	Glutaredoxin-3; metal binding protein; 1.84A {Homo	93.07
1t1v_A	93	SH3BGRL3, SH3 domain-binding glutamic acid-rich pr	92.99
3gkx_A	120	Putative ARSC family related protein; ARSC family	92.59
3rdw_A	121	Putative arsenate reductase; structural genomics,	92.57
3gx8_A	121	Monothiol glutaredoxin-5, mitochondrial; TRX fold,	92.47
1pn0_A	665	Phenol 2-monooxygenase; two dimers, TLS refinement	92.44
2wci_A	135	Glutaredoxin-4; redox-active center, iron-sulfur c	92.38
3gn3_A	182	Putative protein-disulfide isomerase; MCSG, PSI, s	92.33
2dkh_A	639	3-hydroxybenzoate hydroxylase; flavoprotein, monoo	92.03
3f0i_A	119	Arsenate reductase; structural genomics, IDP01300,	91.98
3ipz_A	109	Monothiol glutaredoxin-S14, chloroplastic; electro	91.87
2kok_A	120	Arsenate reductase; brucellosis, zoonotic, oxidore	91.8
2l4c_A	124	Endoplasmic reticulum resident protein 27; ERP27,	91.77
1s3c_A	141	Arsenate reductase; ARSC, arsenite, oxidoreductase	91.66
3l4n_A	127	Monothiol glutaredoxin-6; C-terminal domain of GRX	91.31
3gmf_A	205	Protein-disulfide isomerase; oxidoreductase, PSI-2	91.26
1u6t_A	121	SH3 domain-binding glutamic acid-rich-like protein	90.65
3ihg_A	535	RDME; flavoenzyme, anthracycline, polyketide biosy	90.24
1sji_A	350	Calsequestrin 2, calsequestrin, cardiac muscle iso	88.81
1rw1_A	114	Conserved hypothetical protein YFFB; thioredoxin f	88.56
1nm3_A	241	Protein HI0572; hybrid, peroxiredoxin, glutaredoxi	87.58
2axo_A	270	Hypothetical protein ATU2684; alpha beta protein.,	85.99
3us3_A	367	Calsequestrin-1; calcium-binding protein; 1.74A {O	85.57
2in3_A	216	Hypothetical protein; DSBA family, FRNE-like subfa	84.97
3ghf_A	120	Septum site-determining protein MINC; structural g	82.95

>4g2e_A Peroxiredoxin; redox protein, structural genomics, NPPSFA, national project protein structural and functional analyses; 1.40A {Sulfolobus tokodaii} PDB: 2ywn_A 3hjp_A

Probab=100.00  E-value=1.1e-34  Score=219.21  Aligned_cols=148  Identities=41%  Similarity=0.604  Sum_probs=125.8

Q ss_pred             cCCCCCCCCCeEEeCCCCCeeecCCcCCCcEEEEEEcCCCChhhHHHHHHHHHHHHHHHHcCcEEEEEeCCCHHHHHHHH
Q 028030           67 KVSKGQAPPSFTLKDQEGRNVSLSKFKGKPVVVYFYPADETPGCTKQACAFRDSYEKFKKAGAEVIGISGDDSSSHKAFA  146 (215)
Q Consensus        67 ~~~~g~~~P~f~l~~~~g~~~~l~~~~gk~~ll~f~~a~~C~~C~~~~~~l~~l~~~~~~~~v~vv~vs~d~~~~~~~~~  146 (215)
                      .+++|+++|+|+++|.+|+.++|++++||++||+||+++||++|..+++.|+++++++++.|+++++|+.|+++.+++|+
T Consensus         3 ~l~vG~~aPdF~l~~~~G~~~~l~d~~Gk~vvl~f~~~~~c~~C~~e~~~l~~~~~~~~~~~~~~v~vs~d~~~~~~~~~   82 (157)
T 4g2e_A            3 MVEIGELAPDFELPDTELKKVKLSALKGKVVVLAFYPAAFTQVCTKEMCTFRDSMAKFNQVNAVVLGISVDPPFSNKAFK   82 (157)
T ss_dssp             CCCTTSBCCCCEEEBTTSCEEEGGGGTTSCEEEEECSCTTCCC------CCSCGGGGGGGCSSEEEEEESSCHHHHHHHH
T ss_pred             cCCCCCCCcCeEeECCCCCEEeHHHHCCCeEEEEecCCCCCCccccchhhcccccccccccCceEeeecccchhHHHHHH
Confidence            47899999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHcCCCeEEEEcCChhHHHHhCCCccCCC----CCCccEEEEEcCCCcEEEEEeCCC-CCCccHHHHHHHHhc
Q 028030          147 KKYRLPYTLLSDEGNKVRKEWGVPADFFG----SLPGRQTYILDKNGVVQLIYNNQF-QPEKHIDETLKFLQS  214 (215)
Q Consensus       147 ~~~~~~~~~~~d~~~~~~~~~g~~~~~~g----~~p~~~~~lid~~G~v~~~~~g~~-~~~~~~~~il~~l~~  214 (215)
                      ++++++|+++.|++++++++||+.....+    .++.|++||||++|+|++.+.+.. ..+.+.+++++.|++
T Consensus        83 ~~~~~~~p~l~D~~~~v~~~ygv~~~~~~~~~~~~~~p~tflID~~G~I~~~~~~~~~~~~~~~~eil~~l~~  155 (157)
T 4g2e_A           83 EHNKLNFTILSDYNREVVKKYNVAWEFPALPGYVLAKRAVFVIDKEGKVRYKWVSDDPTKEPPYDEIEKVVKS  155 (157)
T ss_dssp             HHTTCCSEEEECTTSHHHHHTTCEEECTTSTTCEEECEEEEEECTTSBEEEEEEESSTTCCCCHHHHHHHHHH
T ss_pred             HHcCCcEEEEEcCCcHHHHHcCCccccccCCCcceeeeeEEEECCCCEEEEEEECCCCCCCCCHHHHHHHHHH
Confidence            99999999999999999999999643222    123458999999999999987643 344578888888874

>3drn_A Peroxiredoxin, bacterioferritin comigratory prote homolog; bacterioferritin comigratory protein, oxidore; HET: CIT; 2.15A {Sulfolobus solfataricus} SCOP: c.47.1.0

Probab=100.00  E-value=3.3e-32  Score=205.94  Aligned_cols=144  Identities=42%  Similarity=0.775  Sum_probs=132.9

Q ss_pred             CCCCCCCCCeEEeCCCCCeeecCCcCCCc-EEEEEEcCCCChhhHHHHHHHHHHHHHHHHcCcEEEEEeCCCHHHHHHHH
Q 028030           68 VSKGQAPPSFTLKDQEGRNVSLSKFKGKP-VVVYFYPADETPGCTKQACAFRDSYEKFKKAGAEVIGISGDDSSSHKAFA  146 (215)
Q Consensus        68 ~~~g~~~P~f~l~~~~g~~~~l~~~~gk~-~ll~f~~a~~C~~C~~~~~~l~~l~~~~~~~~v~vv~vs~d~~~~~~~~~  146 (215)
                      +++|+++|+|++.+.+|+.+++++++||+ +||+||+++||++|+.+++.|++++++|+++|++||+|+.|+++.+++|+
T Consensus         2 l~~G~~~P~f~l~~~~G~~~~l~~~~gk~~vvl~F~~a~~C~~C~~~~~~l~~~~~~~~~~~v~vv~vs~d~~~~~~~~~   81 (161)
T 3drn_A            2 VKVGDKAPLFEGIADNGEKISLSDYIGKHNIVLYFYPKDDTPGSTREASAFRDNWDLLKDYDVVVIGVSSDDINSHKRFK   81 (161)
T ss_dssp             CCTTSBCCCCEEEETTSCEEEGGGTTTTSEEEEEECSCTTCHHHHHHHHHHHHTHHHHHTTCEEEEEEESCCHHHHHHHH
T ss_pred             CCCCCcCCCeEeecCCCCEEEHHHhcCCCCEEEEEEcCCCCCchHHHHHHHHHHHHHHHHcCCEEEEEeCCCHHHHHHHH
Confidence            57899999999999999999999999998 99999999999999999999999999999989999999999999999999


Q ss_pred             HHcCCCeEEEEcCChhHHHHhCCCccCCCCCCccEEEEEcCCCcEEEEEeCCCCCCccHHHHHHHHhc
Q 028030          147 KKYRLPYTLLSDEGNKVRKEWGVPADFFGSLPGRQTYILDKNGVVQLIYNNQFQPEKHIDETLKFLQS  214 (215)
Q Consensus       147 ~~~~~~~~~~~d~~~~~~~~~g~~~~~~g~~p~~~~~lid~~G~v~~~~~g~~~~~~~~~~il~~l~~  214 (215)
                      ++++++|+++.|.+.++.+.||+.+. ...+|  ++||||++|+|++.+.|.......++++++.|++
T Consensus        82 ~~~~~~~~~~~d~~~~~~~~~~v~~~-~~~~P--~~~lid~~G~i~~~~~g~~~~~~~~~~il~~l~~  146 (161)
T 3drn_A           82 EKYKLPFILVSDPDKKIRELYGAKGF-ILPAR--ITFVIDKKGIIRHIYNSQMNPANHVNEALKALKQ  146 (161)
T ss_dssp             HHTTCCSEEEECTTSHHHHHTTCCCS-SSCCC--EEEEECTTSBEEEEEECSSCTTHHHHHHHHHHHH
T ss_pred             HHhCCCceEEECCcHHHHHHcCCCCc-Ccccc--eEEEECCCCEEEEEEecCCCCCcCHHHHHHHHHH
Confidence            99999999999999999999999852 22356  9999999999999999976677788888888764

>4gqc_A Thiol peroxidase, peroxiredoxin Q; CXXXXC motif, fully folded, locally unfolded, peroxide, DTT, structural genomics, riken; 2.00A {Aeropyrum pernix} PDB: 2cx3_A 2cx4_A 4gqf_A

Probab=100.00  E-value=2.1e-34  Score=219.27  Aligned_cols=148  Identities=33%  Similarity=0.534  Sum_probs=130.8

Q ss_pred             cCCCCCCCCCeEEeCCCCCeeecCCc--CCCcEEEEEEcCCCChhhHHHHHHHHHHHHHHHHcCcEEEEEeCCCHHHHHH
Q 028030           67 KVSKGQAPPSFTLKDQEGRNVSLSKF--KGKPVVVYFYPADETPGCTKQACAFRDSYEKFKKAGAEVIGISGDDSSSHKA  144 (215)
Q Consensus        67 ~~~~g~~~P~f~l~~~~g~~~~l~~~--~gk~~ll~f~~a~~C~~C~~~~~~l~~l~~~~~~~~v~vv~vs~d~~~~~~~  144 (215)
                      .+++|+++|+|+++|.+|+.++|+++  +||++||+||+++||++|..+++.|++++++|+++|+++++|+.|+++.+++
T Consensus         4 ml~vG~~aPdF~l~~~~G~~v~Lsd~~~~Gk~vvl~f~~~~~cp~C~~e~~~l~~~~~~~~~~~v~vv~is~d~~~~~~~   83 (164)
T 4gqc_A            4 LVELGEKAPDFTLPNQDFEPVNLYEVLKRGRPAVLIFFPAAFSPVCTKELCTFRDKMAQLEKANAEVLAISVDSPWCLKK   83 (164)
T ss_dssp             CCCTTSBCCCCEEEBTTSCEEEHHHHHHTSSCEEEEECSCTTCCEECSSCEESCCCGGGGGGSSSEEEEEESSCHHHHHH
T ss_pred             cccCCCCCcCcEeECCCCCEEEHHHHhcCCCEEEEEEeCCCCCCCcccchhhhhhhHHHhhccCceEEEecCCCHHHHHH
Confidence            47899999999999999999999998  8999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHcCCCeEEEEcCChhHHHHhCCCccCCC---CCCccEEEEEcCCCcEEEEEeCCCC-CCccHHHHHHHHhc
Q 028030          145 FAKKYRLPYTLLSDEGNKVRKEWGVPADFFG---SLPGRQTYILDKNGVVQLIYNNQFQ-PEKHIDETLKFLQS  214 (215)
Q Consensus       145 ~~~~~~~~~~~~~d~~~~~~~~~g~~~~~~g---~~p~~~~~lid~~G~v~~~~~g~~~-~~~~~~~il~~l~~  214 (215)
                      |.++++++|+++.|++++++++||+.....+   .++.|++||||++|+|++.+.+... ...+.+++++.|++
T Consensus        84 ~~~~~~~~fp~l~D~~~~v~~~ygv~~~~~~~~~~~~~p~tflID~~G~I~~~~~~~~~~~~~~~~eil~~l~~  157 (164)
T 4gqc_A           84 FKDENRLAFNLLSDYNREVIKLYNVYHEDLKGLKMVAKRAVFIVKPDGTVAYKWVTDNPLNEPDYDEVVREANK  157 (164)
T ss_dssp             HHHHTTCCSEEEECTTSHHHHHTTCEEEEETTEEEEECCEEEEECTTSBEEEEEECSCTTCCCCHHHHHHHHHH
T ss_pred             HHHhcCcccceeecCchHHHHHcCCcccccccCcCCeeeEEEEECCCCEEEEEEEeCCCCCCCCHHHHHHHHHH
Confidence            9999999999999999999999999643221   1234489999999999999876433 34578888887763

>3gkn_A Bacterioferritin comigratory protein; BCP, PRX, atypical 2-Cys, oxidoreduc; HET: BIH; 1.47A {Xanthomonas campestris PV} PDB: 3gkk_A 3gkm_A

Probab=99.98  E-value=1e-31  Score=203.15  Aligned_cols=146  Identities=28%  Similarity=0.506  Sum_probs=130.2

Q ss_pred             ccCCCCCCCCCeE--EeCCCCCeeecCCcCCCcEEEEEEcCCCChhhHHHHHHHHHHHHHHHHcCcEEEEEeCCCHHHHH
Q 028030           66 AKVSKGQAPPSFT--LKDQEGRNVSLSKFKGKPVVVYFYPADETPGCTKQACAFRDSYEKFKKAGAEVIGISGDDSSSHK  143 (215)
Q Consensus        66 ~~~~~g~~~P~f~--l~~~~g~~~~l~~~~gk~~ll~f~~a~~C~~C~~~~~~l~~l~~~~~~~~v~vv~vs~d~~~~~~  143 (215)
                      ..+.+|+++|+|+  +.+.+|+++++++++||++||+||+++||++|..+++.|++++++|+++|++||+|+.|+++.++
T Consensus         5 ~~l~~G~~~P~f~~~l~~~~G~~~~l~~~~gk~~vl~F~~~~~c~~C~~~~~~l~~~~~~~~~~~~~vv~vs~d~~~~~~   84 (163)
T 3gkn_A            5 TDAVLELPAATFDLPLSLSGGTQTTLRAHAGHWLVIYFYPKDSTPGATTEGLDFNALLPEFDKAGAKILGVSRDSVKSHD   84 (163)
T ss_dssp             CCCCCCCCGGGGGCCEECSTTCEECSGGGTTSCEEEEECSCTTSHHHHHHHHHHHHHHHHHHHTTCEEEEEESSCHHHHH
T ss_pred             cccccCCcCCCccccccCCCCCEEEHHHhCCCcEEEEEeCCCCCCcHHHHHHHHHHHHHHHHHCCCEEEEEeCCCHHHHH
Confidence            4578999999999  99999999999999999999999955999999999999999999999999999999999999999


Q ss_pred             HHHHHcCCCeEEEEcCChhHHHHhCCCccC--CC-----CCCccEEEEEcCCCcEEEEEeCCCCCCccHHHHHHHHhc
Q 028030          144 AFAKKYRLPYTLLSDEGNKVRKEWGVPADF--FG-----SLPGRQTYILDKNGVVQLIYNNQFQPEKHIDETLKFLQS  214 (215)
Q Consensus       144 ~~~~~~~~~~~~~~d~~~~~~~~~g~~~~~--~g-----~~p~~~~~lid~~G~v~~~~~g~~~~~~~~~~il~~l~~  214 (215)
                      +|+++++++|+++.|.++++.+.||+....  .|     ..|  ++||||++|+|++.+.+ ......++++++.|++
T Consensus        85 ~~~~~~~~~~~~~~d~~~~~~~~~~v~~~~~~~~~~~~~~~p--~~~lid~~G~i~~~~~~-~~~~~~~~~il~~l~~  159 (163)
T 3gkn_A           85 NFCAKQGFAFPLVSDGDEALCRAFDVIKEKNMYGKQVLGIER--STFLLSPEGQVVQAWRK-VKVAGHADAVLAALKA  159 (163)
T ss_dssp             HHHHHHCCSSCEEECTTCHHHHHTTCEEEEEETTEEEEEECC--EEEEECTTSCEEEEECS-CCSTTHHHHHHHHHHH
T ss_pred             HHHHHhCCCceEEECCcHHHHHHhCCccccccccccccCcce--EEEEECCCCeEEEEEcC-CCcccCHHHHHHHHHH
Confidence            999999999999999999999999997521  11     155  99999999999999944 4555677888887764

>3ixr_A Bacterioferritin comigratory protein; alpha beta protein, oxidoreductase; 1.60A {Xylella fastidiosa}

Probab=99.97  E-value=4.8e-32  Score=208.82  Aligned_cols=146  Identities=24%  Similarity=0.411  Sum_probs=129.9

Q ss_pred             ccCCCCCC----CCCeEEeCCCCCeeecCCcCCCcEEEEEEcCCCChhhHHHHHHHHHHHHHHHHcCcEEEEEeCCCHHH
Q 028030           66 AKVSKGQA----PPSFTLKDQEGRNVSLSKFKGKPVVVYFYPADETPGCTKQACAFRDSYEKFKKAGAEVIGISGDDSSS  141 (215)
Q Consensus        66 ~~~~~g~~----~P~f~l~~~~g~~~~l~~~~gk~~ll~f~~a~~C~~C~~~~~~l~~l~~~~~~~~v~vv~vs~d~~~~  141 (215)
                      ..+++|+.    +|+|+++|.+|++++|++++||++||+||+++||++|..+++.|++++++|+++|++||+|+.|+++.
T Consensus        19 ~~l~~Gd~ig~~aP~f~l~~~~G~~v~l~d~~Gk~vvl~f~~~~~c~~C~~el~~l~~l~~~~~~~~~~vv~Vs~D~~~~   98 (179)
T 3ixr_A           19 SHMNIGDTLNHSLLNHPLMLSGSTCKTLSDYTNQWLVLYFYPKDNTPGSSTEGLEFNLLLPQFEQINATVLGVSRDSVKS   98 (179)
T ss_dssp             CSSCTTCBCCHHHHHCCEEEGGGEEECGGGGTTSEEEEEECSCTTSHHHHHHHHHHHHHHHHHHTTTEEEEEEESCCHHH
T ss_pred             cccCcCcccCCcCCCeeEECCCCCEEeHHHHCCCCEEEEEEcCCCCCchHHHHHHHHHHHHHHHHCCCEEEEEcCCCHHH
Confidence            56778888    99999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHcCCCeEEEEcCChhHHHHhCCCccCC--C-----CCCccEEEEEcCCCcEEEEEeCCCCCCccHHHHHHHHhc
Q 028030          142 HKAFAKKYRLPYTLLSDEGNKVRKEWGVPADFF--G-----SLPGRQTYILDKNGVVQLIYNNQFQPEKHIDETLKFLQS  214 (215)
Q Consensus       142 ~~~~~~~~~~~~~~~~d~~~~~~~~~g~~~~~~--g-----~~p~~~~~lid~~G~v~~~~~g~~~~~~~~~~il~~l~~  214 (215)
                      +++|+++++++|+++.|.++++.+.||+.....  |     ..|  ++||||++|+|++.+.+ ......++++++.|++
T Consensus        99 ~~~~~~~~~~~f~~l~D~~~~~~~~~gv~~~~~~~g~~~~~~~p--~~~lID~~G~I~~~~~~-~~~~~~~~~il~~l~~  175 (179)
T 3ixr_A           99 HDSFCAKQGFTFPLVSDSDAILCKAFDVIKEKTMYGRQVIGIER--STFLIGPTHRIVEAWRQ-VKVPGHAEEVLNKLKA  175 (179)
T ss_dssp             HHHHHHHHTCCSCEEECTTCHHHHHTTCEEEECCC--CEEEECC--EEEEECTTSBEEEEECS-CCSTTHHHHHHHHHHH
T ss_pred             HHHHHHHcCCceEEEECCchHHHHHcCCcccccccCcccCCcce--EEEEECCCCEEEEEEcC-CCCCCCHHHHHHHHHH
Confidence            999999999999999999999999999975211  1     234  99999999999999954 4556677888887763

>3sbc_A Peroxiredoxin TSA1; alpha-beta fold, peroxidase, cytosol, oxidoreductase; 2.80A {Saccharomyces cerevisiae}

Probab=99.97  E-value=1.5e-31  Score=210.58  Aligned_cols=148  Identities=28%  Similarity=0.417  Sum_probs=134.2

Q ss_pred             ccCCCCCCCCCeEEe---CCCCCeeecCCcCCCcEEEEEEcCCCChhhHHHHHHHHHHHHHHHHcCcEEEEEeCCCHHHH
Q 028030           66 AKVSKGQAPPSFTLK---DQEGRNVSLSKFKGKPVVVYFYPADETPGCTKQACAFRDSYEKFKKAGAEVIGISGDDSSSH  142 (215)
Q Consensus        66 ~~~~~g~~~P~f~l~---~~~g~~~~l~~~~gk~~ll~f~~a~~C~~C~~~~~~l~~l~~~~~~~~v~vv~vs~d~~~~~  142 (215)
                      ..+++|+++|||+++   |.++++++|+|++||++||+|||++||+.|..++..|++++++|++.|++||+||.|+.+.+
T Consensus        21 M~~~VG~~APdF~l~a~~d~~~~~vsLsd~~GK~vVL~FyP~d~TpvCt~E~~~f~~~~~~f~~~g~~vigiS~Ds~~sh  100 (216)
T 3sbc_A           21 MVAQVQKQAPTFKKTAVVDGVFDEVSLDKYKGKYVVLAFIPLAFTFVSPTEIIAFSEAAKKFEEQGAQVLFASTDSEYSL  100 (216)
T ss_dssp             -CCCTTSBCCCCCEEEEETTEEEEECGGGGTTSEEEEEECSCTTSSHHHHHHHHHHHHHHHHHHTTEEEEEEESSCHHHH
T ss_pred             chhhcCCcCCCCCCcceECCCCcEEehHHhCCCeEEEEEEcCCCCCcCchhhhHHHHhHHhhccCCceEEEeecCchhhH
Confidence            446899999999976   66778999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHc-------CCCeEEEEcCChhHHHHhCCCccCCCCCCccEEEEEcCCCcEEEEEeCCCCCCccHHHHHHHHhc
Q 028030          143 KAFAKKY-------RLPYTLLSDEGNKVRKEWGVPADFFGSLPGRQTYILDKNGVVQLIYNNQFQPEKHIDETLKFLQS  214 (215)
Q Consensus       143 ~~~~~~~-------~~~~~~~~d~~~~~~~~~g~~~~~~g~~p~~~~~lid~~G~v~~~~~g~~~~~~~~~~il~~l~~  214 (215)
                      ++|.+..       +++||++.|.++++.++||+.....| ++.|.+||||++|+|++.+..+.....+++++|+.|+.
T Consensus       101 ~aw~~~~~~~~~~~~l~fpllsD~~~~vak~YGv~~~~~g-~~~R~tFiID~~G~Ir~~~v~~~~~grn~dEiLr~l~A  178 (216)
T 3sbc_A          101 LAWTNIPRKEGGLGPINIPLLADTNHSLSRDYGVLIEEEG-VALRGLFIIDPKGVIRHITINDLPVGRNVDEALRLVEA  178 (216)
T ss_dssp             HHHHTSCGGGTCCCSCSSCEEECTTSHHHHHHTCEETTTT-EECEEEEEECTTSBEEEEEEECTTBCCCHHHHHHHHHH
T ss_pred             HHHHHHHHHhCCccCcccceEeCCCCHHHHHcCCeeccCC-ceeeEEEEECCCCeEEEEEEcCCCCCCCHHHHHHHHHH
Confidence            9999765       47899999999999999999865544 56679999999999999988877788999999998874

>1psq_A Probable thiol peroxidase; structural genomics, NYSGXRC, PSI, structure initiative, NEW YORK SGX research center for STRU genomics; 2.30A {Streptococcus pneumoniae} SCOP: c.47.1.10

Probab=99.97  E-value=7.3e-31  Score=198.99  Aligned_cols=146  Identities=18%  Similarity=0.319  Sum_probs=129.1

Q ss_pred             ccCCCCCCCCCeEEeCCCCCeeecCCcCCCcEEEEEEcCCCChhhHHHHHHHHHHHHHHHHcCcEEEEEeCCCHHHHHHH
Q 028030           66 AKVSKGQAPPSFTLKDQEGRNVSLSKFKGKPVVVYFYPADETPGCTKQACAFRDSYEKFKKAGAEVIGISGDDSSSHKAF  145 (215)
Q Consensus        66 ~~~~~g~~~P~f~l~~~~g~~~~l~~~~gk~~ll~f~~a~~C~~C~~~~~~l~~l~~~~~~~~v~vv~vs~d~~~~~~~~  145 (215)
                      ..+++|+++|+|++++.+|+.+++++++||++||+||+++||++|..+++.|++++++|  ++++||+|+.|+++.+++|
T Consensus        14 ~~~~~G~~~P~f~l~~~~G~~v~l~~~~gk~vvl~F~~~~~c~~C~~~~~~l~~~~~~~--~~v~vv~is~d~~~~~~~~   91 (163)
T 1psq_A           14 KQLQVGDKALDFSLTTTDLSKKSLADFDGKKKVLSVVPSIDTGICSTQTRRFNEELAGL--DNTVVLTVSMDLPFAQKRW   91 (163)
T ss_dssp             CCCCTTSBCCCCEEECTTSCEEEGGGGTTSEEEEEECSCTTSHHHHHHHHHHHHHTTTC--TTEEEEEEESSCHHHHHHH
T ss_pred             CCCCCCCCCCCEEEEcCCCcEeeHHHhCCCEEEEEEECCCCCCccHHHHHHHHHHHHHc--CCcEEEEEECCCHHHHHHH
Confidence            35689999999999999999999999999999999997799999999999999999999  6899999999999999999


Q ss_pred             HHHcCC-CeEEEEc-CChhHHHHhCCCccCCCCCCccEEEEEcCCCcEEEEEeCC-CCCCccHHHHHHHHhc
Q 028030          146 AKKYRL-PYTLLSD-EGNKVRKEWGVPADFFGSLPGRQTYILDKNGVVQLIYNNQ-FQPEKHIDETLKFLQS  214 (215)
Q Consensus       146 ~~~~~~-~~~~~~d-~~~~~~~~~g~~~~~~g~~p~~~~~lid~~G~v~~~~~g~-~~~~~~~~~il~~l~~  214 (215)
                      ++++++ +|+++.| .++++.+.||+.....| ++.|++||||++|+|++.+.|. .......+++++.|++
T Consensus        92 ~~~~~~~~~~~l~D~~~~~~~~~~gv~~~~~g-~~~p~~~liD~~G~i~~~~~g~~~~~~~~~~~~l~~l~~  162 (163)
T 1psq_A           92 CGAEGLDNAIMLSDYFDHSFGRDYALLINEWH-LLARAVFVLDTDNTIRYVEYVDNINSEPNFEAAIAAAKA  162 (163)
T ss_dssp             HHHHTCTTSEEEECTTTCHHHHHHTCBCTTTC-SBCCEEEEECTTCBEEEEEECSBTTSCCCHHHHHHHHHH
T ss_pred             HHhcCCCCcEEecCCchhHHHHHhCCccccCC-ceEEEEEEEcCCCeEEEEEecCCcCCCCCHHHHHHHHHh
Confidence            999999 9999999 88999999999853223 3334999999999999999874 3345667888888864

>3p7x_A Probable thiol peroxidase; thioredoxin fold, oxidoreductase; HET: PG4; 1.96A {Staphylococcus aureus} SCOP: c.47.1.0

Probab=99.97  E-value=1.1e-30  Score=198.50  Aligned_cols=145  Identities=23%  Similarity=0.317  Sum_probs=129.4

Q ss_pred             ccCCCCCCCCCeEEeCCCCCeeecCCcCCCcEEEEEEcCCCChhhHHHHHHHHHHHHHHHHcCcEEEEEeCCCHHHHHHH
Q 028030           66 AKVSKGQAPPSFTLKDQEGRNVSLSKFKGKPVVVYFYPADETPGCTKQACAFRDSYEKFKKAGAEVIGISGDDSSSHKAF  145 (215)
Q Consensus        66 ~~~~~g~~~P~f~l~~~~g~~~~l~~~~gk~~ll~f~~a~~C~~C~~~~~~l~~l~~~~~~~~v~vv~vs~d~~~~~~~~  145 (215)
                      ..+++|+++|+|+++|.+|+.+++++++||++||+||+++||++|..+++.|++++++   +|++||+|+.|+++.+++|
T Consensus        18 ~~l~~G~~aP~f~l~~~~G~~~~l~~~~Gk~vvl~f~~~~~c~~C~~~~~~l~~~~~~---~~~~vv~is~d~~~~~~~~   94 (166)
T 3p7x_A           18 QQINEGDFAPDFTVLDNDLNQVTLADYAGKKKLISVVPSIDTGVCDQQTRKFNSDASK---EEGIVLTISADLPFAQKRW   94 (166)
T ss_dssp             CCCCTTSBCCCCEEECTTSCEEEGGGGTTSCEEEEECSCTTSHHHHHHHHHHHHHSCT---TTSEEEEEESSCHHHHHHH
T ss_pred             ccCCCCCCCCCeEEEcCCCCEEeHHHhCCCcEEEEEECCCCCCccHHHHHHHHHHhhc---CCCEEEEEECCCHHHHHHH
Confidence            4678999999999999999999999999999999999999999999999999999887   6899999999999999999


Q ss_pred             HHHcCC-CeEEEEcC-ChhHHHHhCCCccCCCCCCccEEEEEcCCCcEEEEEeCC-CCCCccHHHHHHHHhc
Q 028030          146 AKKYRL-PYTLLSDE-GNKVRKEWGVPADFFGSLPGRQTYILDKNGVVQLIYNNQ-FQPEKHIDETLKFLQS  214 (215)
Q Consensus       146 ~~~~~~-~~~~~~d~-~~~~~~~~g~~~~~~g~~p~~~~~lid~~G~v~~~~~g~-~~~~~~~~~il~~l~~  214 (215)
                      ++++++ +|+++.|. ++++.+.||+.....| .+.|++||||++|+|++.+.+. ...+.+.+++++.|++
T Consensus        95 ~~~~~~~~~~~l~D~~~~~~~~~~gv~~~~~g-~~~p~~~liD~~G~i~~~~~~~~~~~~~~~~~il~~l~~  165 (166)
T 3p7x_A           95 CASAGLDNVITLSDHRDLSFGENYGVVMEELR-LLARAVFVLDADNKVVYKEIVSEGTDFPDFDAALAAYKN  165 (166)
T ss_dssp             HHHHTCSSCEEEECTTTCHHHHHHTCEETTTT-EECCEEEEECTTCBEEEEEECSBTTSCCCHHHHHHHHHT
T ss_pred             HHHcCCCceEEccCCchhHHHHHhCCccccCC-ceeeEEEEECCCCeEEEEEEcCCcccCCCHHHHHHHHhc
Confidence            999999 89999999 8999999999854333 2234999999999999997653 4456778999998875

>1xvw_A Hypothetical protein RV2238C/MT2298; thioredoxin fold, oxidized cystein sulfenic acid, structural genomics, PSI; 1.90A {Mycobacterium tuberculosis} SCOP: c.47.1.10 PDB: 1xxu_A

Probab=99.97  E-value=5e-31  Score=198.64  Aligned_cols=146  Identities=25%  Similarity=0.428  Sum_probs=132.6

Q ss_pred             CCCCCCCCCeEEeCCCCCeeecCCcCCC-cEEEEEEcCCCChhhHHHHHHHHHHHHHHHHcCcEEEEEeCCCHHHHHHHH
Q 028030           68 VSKGQAPPSFTLKDQEGRNVSLSKFKGK-PVVVYFYPADETPGCTKQACAFRDSYEKFKKAGAEVIGISGDDSSSHKAFA  146 (215)
Q Consensus        68 ~~~g~~~P~f~l~~~~g~~~~l~~~~gk-~~ll~f~~a~~C~~C~~~~~~l~~l~~~~~~~~v~vv~vs~d~~~~~~~~~  146 (215)
                      +.+|+++|+|++.+.+|+.+++++++|| ++||+||+++||++|+.+++.|++++++|++++++|++|+.|+++.+++|+
T Consensus         9 ~~~G~~~p~f~l~~~~G~~~~l~~~~gk~~vvl~F~~a~~C~~C~~~~~~l~~~~~~~~~~~~~vv~is~d~~~~~~~~~   88 (160)
T 1xvw_A            9 LNVGATAPDFTLRDQNQQLVTLRGYRGAKNVLLVFFPLAFTGICQGELDQLRDHLPEFENDDSAALAISVGPPPTHKIWA   88 (160)
T ss_dssp             CCTTSBCCCCEEECTTSCEEEGGGGTTTCEEEEEECSCTTSSHHHHHHHHHHHTGGGTSSSSEEEEEEESCCHHHHHHHH
T ss_pred             CCCCCCCCCeEeEcCCCCEEeHHHhcCCCCEEEEEECCCCCCchHHHHHHHHHHHHHHHHCCcEEEEEeCCCHHHHHHHH
Confidence            7899999999999999999999999998 999999889999999999999999999998889999999999999999999


Q ss_pred             HHcCCCeEEEEcC--ChhHHHHhCCCccCCCCCCccEEEEEcCCCcEEEEEeCCCCCCccHHHHHHHHhc
Q 028030          147 KKYRLPYTLLSDE--GNKVRKEWGVPADFFGSLPGRQTYILDKNGVVQLIYNNQFQPEKHIDETLKFLQS  214 (215)
Q Consensus       147 ~~~~~~~~~~~d~--~~~~~~~~g~~~~~~g~~p~~~~~lid~~G~v~~~~~g~~~~~~~~~~il~~l~~  214 (215)
                      ++++++|+++.|.  ++++.+.||+..... .+|.+++||||++|+|++.+.|.......++++++.|++
T Consensus        89 ~~~~~~~~~~~d~~~~~~~~~~~~v~~~~~-~~p~~~~~lid~~G~i~~~~~g~~~~~~~~~~l~~~l~~  157 (160)
T 1xvw_A           89 TQSGFTFPLLSDFWPHGAVSQAYGVFNEQA-GIANRGTFVVDRSGIIRFAEMKQPGEVRDQRLWTDALAA  157 (160)
T ss_dssp             HHHTCCSCEEECTTTTTHHHHHTTCEETTT-TEECSEEEEECTTSBEEEEEECCTTCCCCHHHHHHHHHH
T ss_pred             HhcCCCceEEecCCcChHHHHHcCCccccC-CCeeeeEEEECCCCeEEEEEecCCCCCCCHHHHHHHHHH
Confidence            9999999999995  889999999983211 177779999999999999999976666688888888764

>2c0d_A Thioredoxin peroxidase 2; peroxiredoxin, 2-Cys, thioredoxin dependant, mitochondrial, antioxidant, oxidoreductase, redox-active center; 1.78A {Plasmodium falciparum}

Probab=99.97  E-value=6.4e-31  Score=209.18  Aligned_cols=146  Identities=27%  Similarity=0.380  Sum_probs=127.4

Q ss_pred             cccCCCCCCCCCeEEeCC--CC--CeeecCCc-CCCcEEEEEEcCCCChhhHHHHHHHHHHHHHHHHcCcEEEEEeCCCH
Q 028030           65 SAKVSKGQAPPSFTLKDQ--EG--RNVSLSKF-KGKPVVVYFYPADETPGCTKQACAFRDSYEKFKKAGAEVIGISGDDS  139 (215)
Q Consensus        65 ~~~~~~g~~~P~f~l~~~--~g--~~~~l~~~-~gk~~ll~f~~a~~C~~C~~~~~~l~~l~~~~~~~~v~vv~vs~d~~  139 (215)
                      +..+++|+++|+|++++.  +|  +.++++++ +||++||+||+++||++|+.+++.|++++++|+++|++||+|+.|++
T Consensus        22 M~~l~~G~~aP~F~l~~~~~~G~~~~v~L~d~~~Gk~vvl~F~patwCp~C~~e~p~l~~l~~~~~~~~v~vv~Is~D~~  101 (221)
T 2c0d_A           22 MKLSLVTKKAYNFTAQGLNKNNEIINVDLSSFIGQKYCCLLFYPLNYTFVCPTEIIEFNKHIKDFENKNVELLGISVDSV  101 (221)
T ss_dssp             ----CTTSBCCCCEEEEECTTSCEEEEEGGGGTTTCEEEEEECCCCTTTCCHHHHHHHHHTHHHHHHTTEEEEEEESSCH
T ss_pred             cccCCCCCCCCCeEEeccccCCCccEEeHHHHcCCCeEEEEEEcCCCCCchHHHHHHHHHHHHHHHHCCCEEEEEeCCCH
Confidence            345789999999999998  99  99999999 99999999999999999999999999999999988999999999999


Q ss_pred             HHHHHHHHHc-------CCCeEEEEcCChhHHHHhCCCccCCC-CCCccEEEEEcCCCcEEEEEeCCCCCCccHHHHHHH
Q 028030          140 SSHKAFAKKY-------RLPYTLLSDEGNKVRKEWGVPADFFG-SLPGRQTYILDKNGVVQLIYNNQFQPEKHIDETLKF  211 (215)
Q Consensus       140 ~~~~~~~~~~-------~~~~~~~~d~~~~~~~~~g~~~~~~g-~~p~~~~~lid~~G~v~~~~~g~~~~~~~~~~il~~  211 (215)
                      +.+++|++++       +++|+++.|.++++.+.||+. ...| .+|  ++||||++|+|++.+.+....+...+++++.
T Consensus       102 ~~~~~~~~~~~~~~g~~~~~fp~l~D~~~~~~~~ygv~-~~~g~~~P--~~~lID~~G~I~~~~~g~~~~~~~~~ell~~  178 (221)
T 2c0d_A          102 YSHLAWKNMPIEKGGIGNVEFTLVSDINKDISKNYNVL-YDNSFALR--GLFIIDKNGCVRHQTVNDLPIGRNVQEVLRT  178 (221)
T ss_dssp             HHHHHHHHSCGGGTCCCSCSSEEEECTTSHHHHHTTCE-ETTTEECE--EEEEECTTSBEEEEEEECTTCCCCHHHHHHH
T ss_pred             HHHHHHHHHhhhhcCccCCceEEEECCchHHHHHcCCc-ccCCCccc--eEEEECCCCeEEEEEecCCCCCCCHHHHHHH
Confidence            9999999988       789999999999999999996 2222 256  9999999999999988765445566777776


Q ss_pred             Hh
Q 028030          212 LQ  213 (215)
Q Consensus       212 l~  213 (215)
                      |+
T Consensus       179 l~  180 (221)
T 2c0d_A          179 ID  180 (221)
T ss_dssp             HH
T ss_pred             HH
Confidence            65

>3mng_A Peroxiredoxin-5, mitochondrial; peroxidase, PRXV, substrate analog, DTT, oxidoreductase; 1.45A {Homo sapiens} SCOP: c.47.1.10 PDB: 2vl3_A 1oc3_A 2vl2_A 2vl9_A 1urm_A 1hd2_A 1h4o_A

Probab=99.97  E-value=8.4e-31  Score=200.97  Aligned_cols=145  Identities=24%  Similarity=0.373  Sum_probs=125.1

Q ss_pred             ccCCCCCCCCCeEEe-CCCCCeeecCC-cCCCcEEEEEEcCCCChhhH-HHHHHHHHHHHHHHHcCcEEEE-EeCCCHHH
Q 028030           66 AKVSKGQAPPSFTLK-DQEGRNVSLSK-FKGKPVVVYFYPADETPGCT-KQACAFRDSYEKFKKAGAEVIG-ISGDDSSS  141 (215)
Q Consensus        66 ~~~~~g~~~P~f~l~-~~~g~~~~l~~-~~gk~~ll~f~~a~~C~~C~-~~~~~l~~l~~~~~~~~v~vv~-vs~d~~~~  141 (215)
                      ..+++|+++|+|+++ +.+|++++|++ ++||++||+||+++||++|. .+++.|++++++|+++|+++|+ |+.|+++.
T Consensus        13 ~~~~vG~~aPdf~l~~~~~g~~v~L~d~~~gk~vvL~f~pa~wcp~C~~~e~p~l~~~~~~~~~~gv~vv~~iS~D~~~~   92 (173)
T 3mng_A           13 APIKVGDAIPAVEVFEGEPGNKVNLAELFKGKKGVLFGVPGAFTPGCSKTHLPGFVEQAEALKAKGVQVVACLSVNDAFV   92 (173)
T ss_dssp             CCCCTTCBCCCCEEECSSTTCEEEHHHHTTTSEEEEEECSCTTCHHHHHTHHHHHHHTHHHHHTTTCCEEEEEESSCHHH
T ss_pred             CCCCCCCCCCCeEeeeCCCCCEEEhHHHhCCCcEEEEEEeCCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEEcCCCHHH
Confidence            557899999999999 99999999999 59999888888899999999 5999999999999999999997 99999999


Q ss_pred             HHHHHHHcCCC--eEEEEcCChhHHHHhCCCccC-----CC-CCCccEEEEEcCCCcEEEEEeCCCCCCcc---HHHHHH
Q 028030          142 HKAFAKKYRLP--YTLLSDEGNKVRKEWGVPADF-----FG-SLPGRQTYILDKNGVVQLIYNNQFQPEKH---IDETLK  210 (215)
Q Consensus       142 ~~~~~~~~~~~--~~~~~d~~~~~~~~~g~~~~~-----~g-~~p~~~~~lid~~G~v~~~~~g~~~~~~~---~~~il~  210 (215)
                      +++|+++++++  |+++.|++++++++||+....     .| ....|.+|||| +|+|++.+.+......+   ++++|+
T Consensus        93 ~~~f~~~~~~~~~fp~l~D~~~~va~~yGv~~~~~~~~~~g~~~~~r~tfvID-dG~I~~~~v~~~~~g~~~~~~~~vl~  171 (173)
T 3mng_A           93 TGEWGRAHKAEGKVRLLADPTGAFGKETDLLLDDSLVSIFGNRRLKRFSMVVQ-DGIVKALNVEPDGTGLTCSLAPNIIS  171 (173)
T ss_dssp             HHHHHHHTTCTTTCEEEECTTCHHHHHHTCBCCSTTHHHHSSCCBCCEEEEEE-TTEEEEEEECTTSSCSSTTSHHHHHH
T ss_pred             HHHHHHHhCCCCceEEEECCChHHHHHhCCCcccccccccCCcceEEEEEEEE-CCEEEEEEEeCCCCCcchHHHHHHHH
Confidence            99999999998  999999999999999998542     12 12335999999 99999999886544433   444544


Q ss_pred             H
Q 028030          211 F  211 (215)
Q Consensus       211 ~  211 (215)
                      .
T Consensus       172 ~  172 (173)
T 3mng_A          172 Q  172 (173)
T ss_dssp             H
T ss_pred             h
Confidence            3

>3tue_A Tryparedoxin peroxidase; thioredoxin fold, peroxiredoxin, oxidoreductase; 3.00A {Leishmania major} PDB: 1e2y_A

Probab=99.97  E-value=4.7e-31  Score=208.21  Aligned_cols=148  Identities=28%  Similarity=0.510  Sum_probs=134.6

Q ss_pred             ccCCCCCCCCCeE----EeCCCCCeeecCCcCCCcEEEEEEcCCCChhhHHHHHHHHHHHHHHHHcCcEEEEEeCCCHHH
Q 028030           66 AKVSKGQAPPSFT----LKDQEGRNVSLSKFKGKPVVVYFYPADETPGCTKQACAFRDSYEKFKKAGAEVIGISGDDSSS  141 (215)
Q Consensus        66 ~~~~~g~~~P~f~----l~~~~g~~~~l~~~~gk~~ll~f~~a~~C~~C~~~~~~l~~l~~~~~~~~v~vv~vs~d~~~~  141 (215)
                      ..+++|+++|+|+    +.|.+|++++|+|++||++||+|||.+||+.|..++..|++++++|++.|++||+||.|+.+.
T Consensus        24 ~~~~vG~~APdF~~~a~l~d~~g~~vsLsd~~GK~vVL~FyP~d~TpvCt~E~~~f~~~~~eF~~~g~~vigiS~Ds~~s  103 (219)
T 3tue_A           24 GNAKINSPAPSFEEVALMPNGSFKKISLSSYKGKWVVLFFYPLDFTFVCPTEVIAFSDSVSRFNELNCEVLACSIDSEYA  103 (219)
T ss_dssp             CCCCTTSBCCCCEEEEECTTSCEEEEEGGGGTTSEEEEEECSCTTCSSCCHHHHHHHTTHHHHHTTTEEEEEEESSCHHH
T ss_pred             cccccCCcCCCCcccccccCCCCcEEehHHhCCCEEEEEEecccCCCCCchhHhhHHHHHhhhccCCcEEEEeeCCchhh
Confidence            3468999999999    457789999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHc-------CCCeEEEEcCChhHHHHhCCCccCCCCCCccEEEEEcCCCcEEEEEeCCCCCCccHHHHHHHHhc
Q 028030          142 HKAFAKKY-------RLPYTLLSDEGNKVRKEWGVPADFFGSLPGRQTYILDKNGVVQLIYNNQFQPEKHIDETLKFLQS  214 (215)
Q Consensus       142 ~~~~~~~~-------~~~~~~~~d~~~~~~~~~g~~~~~~g~~p~~~~~lid~~G~v~~~~~g~~~~~~~~~~il~~l~~  214 (215)
                      +++|.++.       +++||++.|+++++.++||+..+..| ++.|.+||||++|+|++.+........+++++|+.|++
T Consensus       104 h~~w~~~~~~~~~~~~l~fpllsD~~~~va~~yGv~~~~~g-~~~R~tFiIDp~g~Ir~~~~~~~~~gr~~~EvLr~l~a  182 (219)
T 3tue_A          104 HLQWTLQDRKKGGLGTMAIPILADKTKNIARSYGVLEESQG-VAYRGLFIIDPHGMLRQITVNDMPVGRSVEEVLRLLEA  182 (219)
T ss_dssp             HHHHHHSCGGGTCCCSCSSCEEECTTSHHHHHTTCEETTTT-EECEEEEEECTTSBEEEEEEECTTCCCCHHHHHHHHHH
T ss_pred             HHHHhhhhHHhcCccccccccccCcccHHHHHcCCcccCCC-eeEEEEEEECCCCeEEEEEEecCCCCCCHHHHHHHHHH
Confidence            99999864       57899999999999999999865544 66789999999999999988777778899999998864

>1n8j_A AHPC, alkyl hydroperoxide reductase C22 protein; peroxiredoxin, decamer, antioxidant, peroxidase, AHPF, oxidoreductase; 2.17A {Salmonella typhimurium} SCOP: c.47.1.10 PDB: 1yep_A 1yf1_A 1yf0_A 1yex_A 3emp_A

Probab=99.97  E-value=1.1e-30  Score=202.34  Aligned_cols=144  Identities=23%  Similarity=0.372  Sum_probs=125.8

Q ss_pred             CCCCCCCCeEEeCC-CC--CeeecCCcCCCcEEEEEEcCCCChhhHHHHHHHHHHHHHHHHcCcEEEEEeCCCHHHHHHH
Q 028030           69 SKGQAPPSFTLKDQ-EG--RNVSLSKFKGKPVVVYFYPADETPGCTKQACAFRDSYEKFKKAGAEVIGISGDDSSSHKAF  145 (215)
Q Consensus        69 ~~g~~~P~f~l~~~-~g--~~~~l~~~~gk~~ll~f~~a~~C~~C~~~~~~l~~l~~~~~~~~v~vv~vs~d~~~~~~~~  145 (215)
                      ++|+++|+|++++. +|  +.+++++++||++||+||+++||++|..+++.|++++++|+++|++||+|+.|+++.+++|
T Consensus         2 ~~G~~aP~f~l~~~~~G~~~~v~l~~~~Gk~vvl~F~~~~~Cp~C~~e~~~l~~~~~~~~~~~v~vv~Is~d~~~~~~~~   81 (186)
T 1n8j_A            2 LINTKIKPFKNQAFKNGEFIEVTEKDTEGRWSVFFFYPADFTFVSPTELGDVADHYEELQKLGVDVYSVSTDTHFTHKAW   81 (186)
T ss_dssp             CTTCBCCCCEEEEEETTEEEEEEHHHHTTSEEEEEECSCTTCSHHHHHHHHHHHHHHHHHHTTEEEEEEESSCHHHHHHH
T ss_pred             CCCCcCCCcEeecccCCcceEEEHHHHCCCeEEEEEECCCCCCccHHHHHHHHHHHHHHHHCCCEEEEEECCCHHHHHHH
Confidence            57999999999999 59  8999999999999999996699999999999999999999999999999999999999999


Q ss_pred             HHHc----CCCeEEEEcCChhHHHHhCCCccCCCCCCccEEEEEcCCCcEEEEEeCCCCCCccHHHHHHHHh
Q 028030          146 AKKY----RLPYTLLSDEGNKVRKEWGVPADFFGSLPGRQTYILDKNGVVQLIYNNQFQPEKHIDETLKFLQ  213 (215)
Q Consensus       146 ~~~~----~~~~~~~~d~~~~~~~~~g~~~~~~g~~p~~~~~lid~~G~v~~~~~g~~~~~~~~~~il~~l~  213 (215)
                      ++++    +++|+++.|.++++.+.||+.....| ++.|++||||++|+|++.+.+........+++++.|+
T Consensus        82 ~~~~~~~~~~~fp~l~D~~~~~~~~ygv~~~~~g-~~~p~~~lID~~G~i~~~~~~~~~~~~~~~~l~~~l~  152 (186)
T 1n8j_A           82 HSSSETIAKIKYAMIGDPTGALTRNFDNMREDEG-LADRATFVVDPQGIIQAIEVTAEGIGRDASDLLRKIK  152 (186)
T ss_dssp             HHHCTTGGGCCSEEEECTTSHHHHHTTCEETTTT-EECEEEEEECTTSBEEEEEEECTTBCCCHHHHHHHHH
T ss_pred             HHHcCcccCCceeEEECCchHHHHHhCCccCCCC-ceeeEEEEECCCCeEEEEEecCCCCCCCHHHHHHHHH
Confidence            9999    89999999999999999999743222 2234999999999999999875443445666666654

>1q98_A Thiol peroxidase, TPX; structural genomics, NYSGXRC, PSI, protein structure initiative; 1.90A {Haemophilus influenzae} SCOP: c.47.1.10

Probab=99.97  E-value=8.5e-31  Score=199.08  Aligned_cols=145  Identities=21%  Similarity=0.274  Sum_probs=128.5

Q ss_pred             ccCCCCCCCCCeEEeCCCCCeeecCCcCCCcEEEEEEcCCCChhhHHHHHHHHHHHHHHHHcCcEEEEEeCCCHHHHHHH
Q 028030           66 AKVSKGQAPPSFTLKDQEGRNVSLSKFKGKPVVVYFYPADETPGCTKQACAFRDSYEKFKKAGAEVIGISGDDSSSHKAF  145 (215)
Q Consensus        66 ~~~~~g~~~P~f~l~~~~g~~~~l~~~~gk~~ll~f~~a~~C~~C~~~~~~l~~l~~~~~~~~v~vv~vs~d~~~~~~~~  145 (215)
                      ..+++|+++|+|++.+.+|+.+++++++||++||+||+++||++|..+++.|++++++|  +|++||+|+.|+++.+++|
T Consensus        15 ~~~~~G~~~P~f~l~~~~G~~v~l~~~~gk~vvl~f~~~~~c~~C~~e~~~l~~~~~~~--~~v~vv~Is~d~~~~~~~~   92 (165)
T 1q98_A           15 HFPQVGEIVENFILVGNDLADVALNDFASKRKVLNIFPSIDTGVCATSVRKFNQQAAKL--SNTIVLCISADLPFAQARF   92 (165)
T ss_dssp             CCCCTTCBCCCCEEECTTSCEEEGGGGTTSEEEEEECSCSCSSCCCHHHHHHHHHHHHS--TTEEEEEEESSCHHHHTTC
T ss_pred             ccCCCCCCCCCeEEECCCCCEEehHHhCCCeEEEEEECCCCCCccHHHHHHHHHHHHHc--CCCEEEEEeCCCHHHHHHH
Confidence            35789999999999999999999999999999999998999999999999999999999  6899999999999999999


Q ss_pred             HHHcCC-CeEEEEcC-ChhHHHHhCCCccC---CCCCCccEEEEEcCCCcEEEEEeC-CCCCCccHHHHHHHHh
Q 028030          146 AKKYRL-PYTLLSDE-GNKVRKEWGVPADF---FGSLPGRQTYILDKNGVVQLIYNN-QFQPEKHIDETLKFLQ  213 (215)
Q Consensus       146 ~~~~~~-~~~~~~d~-~~~~~~~~g~~~~~---~g~~p~~~~~lid~~G~v~~~~~g-~~~~~~~~~~il~~l~  213 (215)
                      ++++++ +|+++.|. ++++.+.||+....   .| .+.|++||||++|+|++.+.| .......++++++.|+
T Consensus        93 ~~~~~~~~~~~l~D~~~~~~~~~~gv~~~~~~~~g-~~~p~~~liD~~G~i~~~~~~~~~~~~~~~~~~l~~l~  165 (165)
T 1q98_A           93 CGAEGIENAKTVSTFRNHALHSQLGVDIQTGPLAG-LTSRAVIVLDEQNNVLHSQLVEEIKEEPNYEAALAVLA  165 (165)
T ss_dssp             TTTTTCTTEEEEECTTCTHHHHHTTCEECSSTTTT-SBCCEEEEECTTSBEEEEEECSBTTSCCCHHHHHHTTC
T ss_pred             HHHcCCCceEEeeccccchHHHHhCceecccccCC-ccceeEEEEcCCCEEEEEEeCCCCCCCCCHHHHHHhhC
Confidence            999999 79999998 89999999996421   22 334499999999999999986 4455678899998774

>2pn8_A Peroxiredoxin-4; thioredoxin, oxidoreductase, structural genomics consortium, SGC; 1.80A {Homo sapiens}

Probab=99.97  E-value=8.4e-31  Score=207.09  Aligned_cols=146  Identities=29%  Similarity=0.476  Sum_probs=126.9

Q ss_pred             ccCCCCCCCCCeEEeCC---CCCeeecCCcCCCcEEEEEEcCCCChhhHHHHHHHHHHHHHHHHcCcEEEEEeCCCHHHH
Q 028030           66 AKVSKGQAPPSFTLKDQ---EGRNVSLSKFKGKPVVVYFYPADETPGCTKQACAFRDSYEKFKKAGAEVIGISGDDSSSH  142 (215)
Q Consensus        66 ~~~~~g~~~P~f~l~~~---~g~~~~l~~~~gk~~ll~f~~a~~C~~C~~~~~~l~~l~~~~~~~~v~vv~vs~d~~~~~  142 (215)
                      ..+.+|+++|+|++++.   +|+.+++++++||++||+||+++||++|..+++.|++++++|+++|++||+|+.|+++.+
T Consensus        17 ~~~~~G~~aP~f~l~~~~~~~g~~v~l~d~~Gk~vvl~F~pat~C~~C~~e~~~l~~l~~~~~~~~v~vv~Is~D~~~~~   96 (211)
T 2pn8_A           17 NLYFQSMPAPYWEGTAVIDGEFKELKLTDYRGKYLVFFFYPLDFTFVCPTEIIAFGDRLEEFRSINTEVVACSVDSQFTH   96 (211)
T ss_dssp             --CCSSCBCCCCEEEEEETTEEEEEEGGGGTTSEEEEEECSCTTSSHHHHHHHHHHHTHHHHHTTTEEEEEEESSCHHHH
T ss_pred             ccCCCCCcCCCeEeecccCCCCcEEEHHHhCCCeEEEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCHHHH
Confidence            45789999999999974   568999999999999999999999999999999999999999988999999999999999


Q ss_pred             HHHHHHc-------CCCeEEEEcCChhHHHHhCCCccCCC-CCCccEEEEEcCCCcEEEEEeCCCCCCccHHHHHHHHh
Q 028030          143 KAFAKKY-------RLPYTLLSDEGNKVRKEWGVPADFFG-SLPGRQTYILDKNGVVQLIYNNQFQPEKHIDETLKFLQ  213 (215)
Q Consensus       143 ~~~~~~~-------~~~~~~~~d~~~~~~~~~g~~~~~~g-~~p~~~~~lid~~G~v~~~~~g~~~~~~~~~~il~~l~  213 (215)
                      ++|++++       +++|+++.|.++++.+.||+.....| .+|  ++||||++|+|++.+.+........+++++.|+
T Consensus        97 ~~~~~~~~~~~g~~~~~fp~l~D~~~~~~~~ygv~~~~~g~~~p--~~~lID~~G~I~~~~~g~~~~~~~~~ell~~l~  173 (211)
T 2pn8_A           97 LAWINTPRRQGGLGPIRIPLLSDLTHQISKDYGVYLEDSGHTLR--GLFIIDDKGILRQITLNDLPVGRSVDETLRLVQ  173 (211)
T ss_dssp             HHHHTSCGGGTCCCSCSSCEEECTTSHHHHHTTCEETTTTEECE--EEEEECTTSBEEEEEEECTTBCCCHHHHHHHHH
T ss_pred             HHHHHHhhhccCccCCceEEEECCchHHHHHcCCcccCCCcccc--eEEEECCCCEEEEEEecCCCCCCCHHHHHHHHH
Confidence            9999988       78999999999999999999632222 256  999999999999999876555456777777665

>1tp9_A Peroxiredoxin, PRX D (type II); oligomer, thioredoxin fold, oxidoreductase; 1.62A {Populus trichocarpa} SCOP: c.47.1.10

Probab=99.97  E-value=3.3e-30  Score=195.44  Aligned_cols=144  Identities=26%  Similarity=0.376  Sum_probs=125.4

Q ss_pred             cCCCCCCCCCeEEe--CCCC--CeeecCC-cCCCcEEEEEEcCCCChhhH-HHHHHHHHHHHHHHHcCcE-EEEEeCCCH
Q 028030           67 KVSKGQAPPSFTLK--DQEG--RNVSLSK-FKGKPVVVYFYPADETPGCT-KQACAFRDSYEKFKKAGAE-VIGISGDDS  139 (215)
Q Consensus        67 ~~~~g~~~P~f~l~--~~~g--~~~~l~~-~~gk~~ll~f~~a~~C~~C~-~~~~~l~~l~~~~~~~~v~-vv~vs~d~~  139 (215)
                      .+++|+++|+|+++  +.+|  +++++++ ++||++||+||+++||++|. .+++.|++++++|+++|++ ||+|+.|++
T Consensus         3 ~~~~G~~aP~f~l~~~~~~G~~~~~~l~~~~~gk~vvl~f~~~~~c~~C~~~e~~~l~~~~~~~~~~~v~~vv~Is~d~~   82 (162)
T 1tp9_A            3 PIAVGDVLPDGKLAYFDEQDQLQEVSVHSLVAGKKVILFGVPGAFTPTCSLKHVPGFIEKAGELKSKGVTEILCISVNDP   82 (162)
T ss_dssp             CCCTTCBCCCCEEEEECTTSCEEEEESHHHHTTSEEEEEEESCTTCHHHHHTHHHHHHHHHHHHHHTTCCCEEEEESSCH
T ss_pred             cCCCCCCCCCeEEEeecCCCCceeEeHHHHhCCCcEEEEEeCCCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEEECCCH
Confidence            46799999999986  8999  9999999 89999999999999999999 9999999999999999999 999999999


Q ss_pred             HHHHHHHHHcCC--CeEEEEcCChhHHHHhCCCccC--CC--CCCccEEEEEcCCCcEEEEEeCCCCCC---ccHHHHHH
Q 028030          140 SSHKAFAKKYRL--PYTLLSDEGNKVRKEWGVPADF--FG--SLPGRQTYILDKNGVVQLIYNNQFQPE---KHIDETLK  210 (215)
Q Consensus       140 ~~~~~~~~~~~~--~~~~~~d~~~~~~~~~g~~~~~--~g--~~p~~~~~lid~~G~v~~~~~g~~~~~---~~~~~il~  210 (215)
                      +.+++|++++++  +|+++.|+++++.++||+....  .|  ..+.|++|||| +|+|++.+.+. ..+   ...+++|+
T Consensus        83 ~~~~~~~~~~~~~~~~~~l~D~~~~~~~~~gv~~~~~~~g~~~~~~p~~~vid-~G~i~~~~~~~-~~~~~~~~~~~vl~  160 (162)
T 1tp9_A           83 FVMKAWAKSYPENKHVKFLADGSATYTHALGLELDLQEKGLGTRSRRFALLVD-DLKVKAANIEG-GGEFTVSSAEDILK  160 (162)
T ss_dssp             HHHHHHHHTCTTCSSEEEEECTTSHHHHHTTCEEEETTTTSEEEECCEEEEEE-TTEEEEEEECS-SSCCSSCSHHHHHT
T ss_pred             HHHHHHHHhcCCCCCeEEEECCCchHHHHcCcccccccCCCCccceeEEEEEE-CCEEEEEEeeC-CCCCccCCHHHHHh
Confidence            999999999999  8999999999999999997421  12  11233999999 99999999886 332   35788876


Q ss_pred             HH
Q 028030          211 FL  212 (215)
Q Consensus       211 ~l  212 (215)
                      .|
T Consensus       161 ~l  162 (162)
T 1tp9_A          161 DL  162 (162)
T ss_dssp             TC
T ss_pred             hC
Confidence            53

>2i81_A 2-Cys peroxiredoxin; structural genomics consortium, SGC, oxidoreductase; 2.45A {Plasmodium vivax sai-1} PDB: 2h66_A

Probab=99.97  E-value=2.7e-30  Score=204.46  Aligned_cols=145  Identities=29%  Similarity=0.454  Sum_probs=128.8

Q ss_pred             ccCCCCCCCCCeEEeCC--CC--CeeecCCc-CCCcEEEEEEcCCCChhhHHHHHHHHHHHHHHHHcCcEEEEEeCCCHH
Q 028030           66 AKVSKGQAPPSFTLKDQ--EG--RNVSLSKF-KGKPVVVYFYPADETPGCTKQACAFRDSYEKFKKAGAEVIGISGDDSS  140 (215)
Q Consensus        66 ~~~~~g~~~P~f~l~~~--~g--~~~~l~~~-~gk~~ll~f~~a~~C~~C~~~~~~l~~l~~~~~~~~v~vv~vs~d~~~  140 (215)
                      ..+.+|+++|+|++.+.  +|  +.++++++ +||++||+||+++||++|+.+++.|++++++|+++|++||+|+.|+++
T Consensus        19 ~~l~~G~~aP~f~l~~~~~~G~~~~v~l~d~~~gk~vvl~F~pa~~C~~C~~~~~~l~~l~~~~~~~~v~vv~Is~D~~~   98 (213)
T 2i81_A           19 SPTYVGKEAPFFKAEAVFGDNSFGEVNLTQFIGKKYVLLYFYPLDFTFVCPSEIIALDKALDAFHERNVELLGCSVDSKY   98 (213)
T ss_dssp             -CCCBTSBCCCCEEEEECTTSCEEEEEGGGGTTTCEEEEEECSCTTSSHHHHHHHHHHHTHHHHHHTTEEEEEEESSCHH
T ss_pred             ccccCCCcCCCeEeeccccCCceeEEeHHHHcCCCeEEEEEEcCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCCHH
Confidence            45679999999999998  89  89999999 999999999999999999999999999999999889999999999999


Q ss_pred             HHHHHHHHc-------CCCeEEEEcCChhHHHHhCCCccCCC-CCCccEEEEEcCCCcEEEEEeCCCCCCccHHHHHHHH
Q 028030          141 SHKAFAKKY-------RLPYTLLSDEGNKVRKEWGVPADFFG-SLPGRQTYILDKNGVVQLIYNNQFQPEKHIDETLKFL  212 (215)
Q Consensus       141 ~~~~~~~~~-------~~~~~~~~d~~~~~~~~~g~~~~~~g-~~p~~~~~lid~~G~v~~~~~g~~~~~~~~~~il~~l  212 (215)
                      .+++|++++       +++|+++.|.++++.+.||+.. ..| .+|  .+||||++|+|++.+.+......+.+++++.|
T Consensus        99 ~~~~~~~~~~~~~g~~~~~fp~l~D~~~~~~~~ygv~~-~~g~~~p--~~~lID~~G~i~~~~~~~~~~~~~~~ell~~l  175 (213)
T 2i81_A           99 THLAWKKTPLAKGGIGNIKHTLLSDITKSISKDYNVLF-DDSVSLR--AFVLIDMNGIVQHLLVNNLAIGRSVDEILRII  175 (213)
T ss_dssp             HHHHHHSSCGGGTCCCSCSSEEEECTTSHHHHHTTCEE-TTTEECE--EEEEECTTSBEEEEEEECTTCCCCHHHHHHHH
T ss_pred             HHHHHHHHHHhhCCccCCCceEEECCchHHHHHhCCcc-ccCCccc--EEEEECCCCEEEEEEecCCCCCCCHHHHHHHH
Confidence            999999988       8899999999999999999983 112 155  99999999999999887655555677777766


Q ss_pred             h
Q 028030          213 Q  213 (215)
Q Consensus       213 ~  213 (215)
                      +
T Consensus       176 ~  176 (213)
T 2i81_A          176 D  176 (213)
T ss_dssp             H
T ss_pred             H
Confidence            5

>3zrd_A Thiol peroxidase; oxidoreductase, 2Cys peroxiredoxin, thioredoxin-fold, ROS PR; 1.74A {Yersinia pseudotuberculosis} PDB: 2xpe_A 2xpd_A 3zre_A 2yjh_A 4af2_A 3hvs_A* 1qxh_A* 3i43_A* 3hvv_A 3hvx_A

Probab=99.97  E-value=2.1e-30  Score=203.24  Aligned_cols=145  Identities=25%  Similarity=0.317  Sum_probs=129.9

Q ss_pred             ccCCCCCCCCCeEEeCCCCCeeecCCcCCCcEEEEEEcCCCChhhHHHHHHHHHHHHHHHHcCcEEEEEeCCCHHHHHHH
Q 028030           66 AKVSKGQAPPSFTLKDQEGRNVSLSKFKGKPVVVYFYPADETPGCTKQACAFRDSYEKFKKAGAEVIGISGDDSSSHKAF  145 (215)
Q Consensus        66 ~~~~~g~~~P~f~l~~~~g~~~~l~~~~gk~~ll~f~~a~~C~~C~~~~~~l~~l~~~~~~~~v~vv~vs~d~~~~~~~~  145 (215)
                      ..+++|+++|+|+++|.+|+.++|++++||++||+||+++||++|..+++.|++++++|  +|++||+|+.|+++.+++|
T Consensus        50 ~~l~~G~~aPdf~l~d~~G~~v~L~d~~Gk~vvl~F~~~~~c~~C~~e~~~l~~l~~~~--~~v~vv~Is~D~~~~~~~~  127 (200)
T 3zrd_A           50 KLPQIGDKAKDFTLVAKDLSDVALSSFAGKRKVLNIFPSIDTGVCAASVRKFNQLAGEL--ENTVVLCISSDLPFAQSRF  127 (200)
T ss_dssp             CCCCTTCBCCCCEEECTTSCEEEGGGGTTSEEEEEECSCCCCSCCCHHHHHHHHHHHTS--TTEEEEEEESSCHHHHTTC
T ss_pred             ccCCCCCCCCCeEEECCCCCEEcHHHhCCCcEEEEEECCCCCchhHHHHHHHHHHHHHh--CCCEEEEEECCCHHHHHHH
Confidence            46889999999999999999999999999999999998899999999999999999999  5899999999999999999


Q ss_pred             HHHcCC-CeEEEEcC-ChhHHHHhCCCccC---CCCCCccEEEEEcCCCcEEEEEeCC-CCCCccHHHHHHHHh
Q 028030          146 AKKYRL-PYTLLSDE-GNKVRKEWGVPADF---FGSLPGRQTYILDKNGVVQLIYNNQ-FQPEKHIDETLKFLQ  213 (215)
Q Consensus       146 ~~~~~~-~~~~~~d~-~~~~~~~~g~~~~~---~g~~p~~~~~lid~~G~v~~~~~g~-~~~~~~~~~il~~l~  213 (215)
                      ++++++ +|+++.|. ++++.+.||+....   .| ++.|++||||++|+|++.+.+. .....+++++++.|+
T Consensus       128 ~~~~~~~~f~~l~D~~~~~~~~~ygv~~~~~~~~g-~~~p~~~lID~~G~I~~~~~~~~~~~~~~~~~~l~~Lk  200 (200)
T 3zrd_A          128 CGAEGLSNVITLSTLRGADFKQAYGVAITEGPLAG-LTARAVVVLDGQDNVIYSELVNEITTEPNYDAALAALK  200 (200)
T ss_dssp             TTTTTCTTEEEEETTSCTHHHHHTTCEECSSTTTT-SBCCEEEEECTTSBEEEEEECSBTTSCCCHHHHHHHHC
T ss_pred             HHHcCCCCceEEecCchHHHHHHhCceeecccCCC-ccccEEEEECCCCeEEEEEecCCcccCCCHHHHHHhhC
Confidence            999999 99999999 99999999997432   23 2334999999999999998754 455678899998875

>2yzh_A Probable thiol peroxidase; redox protein, antioxidant, oxidoreductase, STRU genomics, NPPSFA; 1.85A {Aquifex aeolicus}

Probab=99.97  E-value=7.9e-30  Score=194.62  Aligned_cols=145  Identities=21%  Similarity=0.328  Sum_probs=126.0

Q ss_pred             ccCCCCCCCCCeEEeCCCCCeeecCCcCCCcEEEEEEcCCCChhhHHHHHHHHHHHHHHHHcCcEEEEEeCCCHHHHHHH
Q 028030           66 AKVSKGQAPPSFTLKDQEGRNVSLSKFKGKPVVVYFYPADETPGCTKQACAFRDSYEKFKKAGAEVIGISGDDSSSHKAF  145 (215)
Q Consensus        66 ~~~~~g~~~P~f~l~~~~g~~~~l~~~~gk~~ll~f~~a~~C~~C~~~~~~l~~l~~~~~~~~v~vv~vs~d~~~~~~~~  145 (215)
                      ..+++|+++|+|++.|.+|+.+++++++||++||+||+++||++|..+++.|+++++++  ++++||+|+.|+++.+++|
T Consensus        19 ~~l~~g~~~P~f~l~~~~G~~~~l~~~~gk~vvl~f~~~~~C~~C~~~~~~l~~~~~~~--~~v~vv~Is~d~~~~~~~~   96 (171)
T 2yzh_A           19 PELKVGDRAPEAVVVTKDLQEKIVGGAKDVVQVIITVPSLDTPVCETETKKFNEIMAGM--EGVDVTVVSMDLPFAQKRF   96 (171)
T ss_dssp             CCCCTTSBCCCEEEEETTSCEEEESSCCSSEEEEEECSCTTSHHHHHHHHHHHHHTTTC--TTEEEEEEESSCHHHHHHH
T ss_pred             CcCCCCCcCCceEEECCCCCEeeHHHhCCCeEEEEEECCCCCCchHHHHHHHHHHHHHc--CCceEEEEeCCCHHHHHHH
Confidence            35689999999999999999999999999999999998899999999999999999999  6899999999999999999


Q ss_pred             HHHcCC-CeEEEEc-CChhHHHHhCCCccC---CCCCCccEEEEEcCCCcEEEEEeCC-CCCCccHHHHHHHHhc
Q 028030          146 AKKYRL-PYTLLSD-EGNKVRKEWGVPADF---FGSLPGRQTYILDKNGVVQLIYNNQ-FQPEKHIDETLKFLQS  214 (215)
Q Consensus       146 ~~~~~~-~~~~~~d-~~~~~~~~~g~~~~~---~g~~p~~~~~lid~~G~v~~~~~g~-~~~~~~~~~il~~l~~  214 (215)
                      ++++++ +|+++.| +++++ +.||+....   .| ++.|++||||++|+|++.+.+. .......+++++.|++
T Consensus        97 ~~~~~~~~~~~l~D~~~~~~-~~~gv~~~~~~~~g-~~~p~~~liD~~G~i~~~~~~~~~~~~~~~~~ll~~l~~  169 (171)
T 2yzh_A           97 CESFNIQNVTVASDFRYRDM-EKYGVLIGEGALKG-ILARAVFIIDKEGKVAYVQLVPEITEEPNYDEVVNKVKE  169 (171)
T ss_dssp             HHHTTCCSSEEEECTTTCGG-GGGTCBBCSSTTTT-SBCCEEEEECTTSBEEEEEECSBTTSCCCCHHHHHHHHH
T ss_pred             HHHcCCCCeEEeecCccCcH-HHhCCEecccccCC-ceeeEEEEEcCCCeEEEEEeCCCcCCCCCHHHHHHHHHh
Confidence            999999 8999999 78899 999997532   12 2234999999999999999763 2334556778777764

>1uul_A Tryparedoxin peroxidase homologue; peroxiredoxin, oxidoreductase; 2.8A {Trypanosoma cruzi} SCOP: c.47.1.10

Probab=99.97  E-value=4.9e-30  Score=201.04  Aligned_cols=146  Identities=27%  Similarity=0.502  Sum_probs=129.7

Q ss_pred             ccCCCCCCCCCeEEeCC--CC--CeeecCCcCCCcEEEEEEcCCCChhhHHHHHHHHHHHHHHHHcCcEEEEEeCCCHHH
Q 028030           66 AKVSKGQAPPSFTLKDQ--EG--RNVSLSKFKGKPVVVYFYPADETPGCTKQACAFRDSYEKFKKAGAEVIGISGDDSSS  141 (215)
Q Consensus        66 ~~~~~g~~~P~f~l~~~--~g--~~~~l~~~~gk~~ll~f~~a~~C~~C~~~~~~l~~l~~~~~~~~v~vv~vs~d~~~~  141 (215)
                      ..+.+|+++|+|++.+.  +|  +.+++++++||++||+||+++||++|..+++.|++++++|+++|++||+|+.|+.+.
T Consensus         4 ~~~~~G~~aP~f~l~~~~~~g~~~~v~l~~~~gk~vvl~F~~~~~C~~C~~~~~~l~~l~~~~~~~~v~vi~Is~D~~~~   83 (202)
T 1uul_A            4 GEAEDLHPAPDFNETALMPNGTFKKVALTSYKGKWLVLFFYPMDFTFVCPTEICQFSDRVKEFSDIGCEVLACSMDSEYS   83 (202)
T ss_dssp             CCCCTTSBCCCCEEEEECTTSCEEEEEGGGGTTSEEEEEECSCTTCSHHHHHHHHHHHTHHHHHTTTEEEEEEESSCHHH
T ss_pred             ccccCCCcCCCcEeeeeecCCCccEEEHHHhCCCeEEEEEECCCCCCcCHHHHHHHHHHHHHHHHCCCEEEEEeCCCHHH
Confidence            35689999999999997  78  899999999999999999999999999999999999999998899999999999999


Q ss_pred             HHHHHHHc-------CCCeEEEEcCChhHHHHhCCCccCCC-CCCccEEEEEcCCCcEEEEEeCCCCCCccHHHHHHHHh
Q 028030          142 HKAFAKKY-------RLPYTLLSDEGNKVRKEWGVPADFFG-SLPGRQTYILDKNGVVQLIYNNQFQPEKHIDETLKFLQ  213 (215)
Q Consensus       142 ~~~~~~~~-------~~~~~~~~d~~~~~~~~~g~~~~~~g-~~p~~~~~lid~~G~v~~~~~g~~~~~~~~~~il~~l~  213 (215)
                      +++|++++       +++|+++.|.++++.+.||+.....| .+|  ++||||++|+|++.+.|......+.+++++.|+
T Consensus        84 ~~~~~~~~~~~~~~~~~~~p~l~D~~~~~~~~ygv~~~~~g~~~P--~~~lid~~G~i~~~~~g~~~~~~~~~ell~~l~  161 (202)
T 1uul_A           84 HLAWTSIERKRGGLGQMNIPILADKTKCIMKSYGVLKEEDGVAYR--GLFIIDPKQNLRQITVNDLPVGRDVDEALRLVK  161 (202)
T ss_dssp             HHHHHHSCGGGTCCCSCSSCEEECTTCHHHHHHTCEETTTTEECE--EEEEECTTSBEEEEEEECTTBCCCHHHHHHHHH
T ss_pred             HHHHHHHHHhhCCCCCCceeEEECCchHHHHHcCCccCCCCceee--EEEEECCCCEEEEEEeCCCCCCCCHHHHHHHHH
Confidence            99999988       88999999999999999999832222 266  999999999999998886655566777777665

>1we0_A Alkyl hydroperoxide reductase C; peroxiredoxin, AHPC, oxidoreductase; 2.90A {Amphibacillus xylanus} SCOP: c.47.1.10

Probab=99.97  E-value=7.4e-30  Score=197.47  Aligned_cols=144  Identities=25%  Similarity=0.392  Sum_probs=125.3

Q ss_pred             CCCCCCCCCeEEeCCCCC----eeecCCcCCCcEEEEEEcCCCChhhHHHHHHHHHHHHHHHHcCcEEEEEeCCCHHHHH
Q 028030           68 VSKGQAPPSFTLKDQEGR----NVSLSKFKGKPVVVYFYPADETPGCTKQACAFRDSYEKFKKAGAEVIGISGDDSSSHK  143 (215)
Q Consensus        68 ~~~g~~~P~f~l~~~~g~----~~~l~~~~gk~~ll~f~~a~~C~~C~~~~~~l~~l~~~~~~~~v~vv~vs~d~~~~~~  143 (215)
                      +++|+++|+|++.+.+|+    .+++++++||++||+||+++||++|+.+++.|++++++|++++++||+|+.|+++.++
T Consensus         1 ~~~G~~~P~f~l~~~~g~~~~~~~~l~~~~gk~vvl~F~~a~~C~~C~~~~~~l~~~~~~~~~~~v~vv~vs~d~~~~~~   80 (187)
T 1we0_A            1 SLIGTEVQPFRAQAFQSGKDFFEVTEADLKGKWSIVVFYPADFSFVCPTELEDVQKEYAELKKLGVEVYSVSTDTHFVHK   80 (187)
T ss_dssp             CCTTCBCCCCEEEEECSSSCCEEEETTTTSSSEEEEEECSCTTCSSCTHHHHHHHHHHHHHHHTTEEEEEEESSCHHHHH
T ss_pred             CCCCCcCCCeEEeccCCCccceEecHHHHCCCCEEEEEECCCCCcchHHHHHHHHHHHHHHHHcCCEEEEEECCCHHHHH
Confidence            468999999999999999    9999999999999999999999999999999999999999989999999999999999


Q ss_pred             HHHHHc----CCCeEEEEcCChhHHHHhCCCccCCC-CCCccEEEEEcCCCcEEEEEeCCCCCCccHHHHHHHHh
Q 028030          144 AFAKKY----RLPYTLLSDEGNKVRKEWGVPADFFG-SLPGRQTYILDKNGVVQLIYNNQFQPEKHIDETLKFLQ  213 (215)
Q Consensus       144 ~~~~~~----~~~~~~~~d~~~~~~~~~g~~~~~~g-~~p~~~~~lid~~G~v~~~~~g~~~~~~~~~~il~~l~  213 (215)
                      +|++++    +++|+++.|.+.++.+.||+.....| .+|  ++||||++|+|++.+.|....+...+++++.|+
T Consensus        81 ~~~~~~~~~~~~~~~~~~d~~~~~~~~~~v~~~~~g~~~P--~~~lid~~G~i~~~~~g~~~~~~~~~~l~~~l~  153 (187)
T 1we0_A           81 AWHENSPAVGSIEYIMIGDPSQTISRQFDVLNEETGLADR--GTFIIDPDGVIQAIEINADGIGRDASTLINKVK  153 (187)
T ss_dssp             HHHHSCHHHHTCCSEEEECTTCHHHHHTTCEETTTTEECE--EEEEECTTSBEEEEEEECTTSCCCTTHHHHHHH
T ss_pred             HHHHHhccccCCCceEEECCchHHHHHhCCCcCCCCceee--EEEEECCCCeEEEEEecCCCCCCCHHHHHHHHH
Confidence            999998    89999999999999999999832222 266  999999999999999886533333444444443

>3tjj_A Peroxiredoxin-4; thioredoxin fold, sulfenylation, endoplasmic reticulum, oxidoreductase; HET: CSO; 1.91A {Homo sapiens} PDB: 3tjk_A 3tjb_A 3tjf_A 3tjg_A 3tkq_A 3tkp_A 3tks_A 3tkr_A 3tks_C

Probab=99.97  E-value=2.7e-30  Score=209.47  Aligned_cols=149  Identities=29%  Similarity=0.473  Sum_probs=132.3

Q ss_pred             cccCCCCCCCCCeEEeC---CCCCeeecCCcCCCcEEEEEEcCCCChhhHHHHHHHHHHHHHHHHcCcEEEEEeCCCHHH
Q 028030           65 SAKVSKGQAPPSFTLKD---QEGRNVSLSKFKGKPVVVYFYPADETPGCTKQACAFRDSYEKFKKAGAEVIGISGDDSSS  141 (215)
Q Consensus        65 ~~~~~~g~~~P~f~l~~---~~g~~~~l~~~~gk~~ll~f~~a~~C~~C~~~~~~l~~l~~~~~~~~v~vv~vs~d~~~~  141 (215)
                      ...+.+|+++|+|++++   .+|++++|++++||++||+||+++||++|..+++.|++++++|+++|++||+|+.|+.+.
T Consensus        59 ~~~l~vG~~aPdF~l~~l~d~~G~~vsLsd~kGK~vvL~F~~a~~cp~C~~el~~l~~l~~~~~~~gv~vv~IS~D~~~~  138 (254)
T 3tjj_A           59 LSKAKISKPAPYWEGTAVIDGEFKELKLTDYRGKYLVFFFYPLDFTFVCPTEIIAFGDRLEEFRSINTEVVACSVDSQFT  138 (254)
T ss_dssp             CCCCCTTSBCCCCEEEEEETTEEEEEEGGGGTTSEEEEEECSCTTCSSCCHHHHHHHHTHHHHHTTTEEEEEEESSCHHH
T ss_pred             ccccCCCCCCCCcEeeeecCCCCcEEeHHHHCCCeEEEEEECCCCCCchHHHHHHHHHHHHHHHHcCCEEEEEcCCCHHH
Confidence            45678999999999774   568899999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHc-------CCCeEEEEcCChhHHHHhCCCccCCCCCCccEEEEEcCCCcEEEEEeCCCCCCccHHHHHHHHhc
Q 028030          142 HKAFAKKY-------RLPYTLLSDEGNKVRKEWGVPADFFGSLPGRQTYILDKNGVVQLIYNNQFQPEKHIDETLKFLQS  214 (215)
Q Consensus       142 ~~~~~~~~-------~~~~~~~~d~~~~~~~~~g~~~~~~g~~p~~~~~lid~~G~v~~~~~g~~~~~~~~~~il~~l~~  214 (215)
                      +++|++++       +++|+++.|.++++.+.||+.....| +..|.+||||++|+|++.+.+......+++++++.|++
T Consensus       139 ~~~~~~~~~~~~g~~~~~fp~l~D~~~~va~~ygv~~~~~g-~~~p~tflID~~G~I~~~~~~~~~~~~~~~eil~~L~a  217 (254)
T 3tjj_A          139 HLAWINTPRRQGGLGPIRIPLLSDLTHQISKDYGVYLEDSG-HTLRGLFIIDDKGILRQITLNDLPVGRSVDETLRLVQA  217 (254)
T ss_dssp             HHHHHTSCGGGTSCCSCSSCEEECTTSHHHHHHTCEETTTT-EECEEEEEECTTSBEEEEEEECTTCCCCHHHHHHHHHH
T ss_pred             HHHHHHHHHHhcCCcccccceeeCcHHHHHHHcCCccccCC-CccceEEEECCCCeEEEEEecCCCCCCCHHHHHHHHHh
Confidence            99999887       78999999999999999999753333 23349999999999999988876777788888888763

>3qpm_A Peroxiredoxin; oxidoreductase, thioredoxin fold, peroxidase; 1.90A {Larimichthys crocea}

Probab=99.97  E-value=5.7e-30  Score=206.10  Aligned_cols=148  Identities=30%  Similarity=0.477  Sum_probs=130.3

Q ss_pred             ccCCCCCCCCCeEEeC---CCCCeeecCCcCCCcEEEEEEcCCCChhhHHHHHHHHHHHHHHHHcCcEEEEEeCCCHHHH
Q 028030           66 AKVSKGQAPPSFTLKD---QEGRNVSLSKFKGKPVVVYFYPADETPGCTKQACAFRDSYEKFKKAGAEVIGISGDDSSSH  142 (215)
Q Consensus        66 ~~~~~g~~~P~f~l~~---~~g~~~~l~~~~gk~~ll~f~~a~~C~~C~~~~~~l~~l~~~~~~~~v~vv~vs~d~~~~~  142 (215)
                      ..+.+|+++|+|++++   .+|++++|++++||++||+||+++||++|..+++.|++++++|+++|++||+|+.|+.+.+
T Consensus        46 ~~l~vG~~aPdF~l~~~~d~~G~~vsLsd~~Gk~vvL~F~~~~~cp~C~~el~~l~~l~~~~~~~gv~vv~Is~D~~~~~  125 (240)
T 3qpm_A           46 SKAKISKPAPQWEGTAVINGEFKELKLSDYRGKYLVFFFYPLDFTFVCPTEIIAFSDRVHEFRAINTEVVACSVDSQFTH  125 (240)
T ss_dssp             CSCCTTSBCCCCEEEEEETTEEEEEEGGGGTTSEEEEEECSCTTSSHHHHHHHHHHHHHHHHHTTTEEEEEEESSCHHHH
T ss_pred             CcCCCCCCCCCcEeeeeeCCCCcEEEHHHhCCCEEEEEEECCCCCCchHHHHHHHHHHHHHHHHCCCEEEEEECCCHHHH
Confidence            5678999999999875   4567999999999999999996699999999999999999999999999999999999999


Q ss_pred             HHHHHHc-------CCCeEEEEcCChhHHHHhCCCccCCCCCCccEEEEEcCCCcEEEEEeCCCCCCccHHHHHHHHhc
Q 028030          143 KAFAKKY-------RLPYTLLSDEGNKVRKEWGVPADFFGSLPGRQTYILDKNGVVQLIYNNQFQPEKHIDETLKFLQS  214 (215)
Q Consensus       143 ~~~~~~~-------~~~~~~~~d~~~~~~~~~g~~~~~~g~~p~~~~~lid~~G~v~~~~~g~~~~~~~~~~il~~l~~  214 (215)
                      ++|++++       +++|+++.|.++++.+.||+.....| +..|.+||||++|+|++.+.+.......++++++.|++
T Consensus       126 ~~~~~~~~~~~~~~~~~fp~l~D~~~~v~~~ygv~~~~~g-~~~p~~flID~~G~I~~~~~~~~~~~~~~~eil~~l~~  203 (240)
T 3qpm_A          126 LAWIITPRKQGGLGPMKIPLLSDLTHQISKDYGVYLEDQG-HTLRGLFIIDEKGVLRQITMNDLPVGRSVDETLRLVQA  203 (240)
T ss_dssp             HHHHHSCGGGTCCCSCSSCEEECTTSHHHHHTTCEETTTT-EECEEEEEECTTSBEEEEEEECTTBCCCHHHHHHHHHH
T ss_pred             HHHHHHHHhhcCCCCCceeEEeCchHHHHHHhCCccccCC-CccceEEEEcCCCeEEEEEecCCCCCCCHHHHHHHHHH
Confidence            9999987       78999999999999999999854333 22349999999999999988866667778888888763

>3ztl_A Thioredoxin peroxidase; oxidoreductase, reductase, schistosomiasis, thioredoxin fold; 3.00A {Schistosoma mansoni} PDB: 3zvj_A 3zvj_D

Probab=99.97  E-value=4.3e-30  Score=204.44  Aligned_cols=148  Identities=30%  Similarity=0.502  Sum_probs=129.5

Q ss_pred             cccCCCCCCCCCeEEeCC---CCCeeecCCcCCCcEEEEEEcCCCChhhHHHHHHHHHHHHHHHHcCcEEEEEeCCCHHH
Q 028030           65 SAKVSKGQAPPSFTLKDQ---EGRNVSLSKFKGKPVVVYFYPADETPGCTKQACAFRDSYEKFKKAGAEVIGISGDDSSS  141 (215)
Q Consensus        65 ~~~~~~g~~~P~f~l~~~---~g~~~~l~~~~gk~~ll~f~~a~~C~~C~~~~~~l~~l~~~~~~~~v~vv~vs~d~~~~  141 (215)
                      ...+.+|+++|+|++.+.   +|+++++++++||++||+||+++||++|..+++.|++++++|+++|++||+|+.|+++.
T Consensus        37 ~~~l~~G~~aP~f~l~~~~d~~G~~v~l~~~~Gk~vll~F~a~~wC~~C~~~~p~l~~l~~~~~~~~v~vv~Is~D~~~~  116 (222)
T 3ztl_A           37 TMVLLPNRPAPEFKGQAVINGEFKEICLKDYRGKYVVLFFYPADFTFVCPTEIIAFSDQVEEFNSRNCQVIACSTDSQYS  116 (222)
T ss_dssp             ---CCSSEECCCCEEEEEETTEEEEEEGGGGTTSEEEEEECSCSSCSHHHHHHHHHHHTHHHHHTTTEEEEEEESSCHHH
T ss_pred             cccccCCCCCCCeEEecccCCCCcEEeHHHhCCCeEEEEEECCCCCCchHHHHHHHHHHHHHHHHCCCEEEEEECCCHHH
Confidence            356899999999999955   55999999999999999999559999999999999999999998899999999999999


Q ss_pred             HHHHHHHc-------CCCeEEEEcCChhHHHHhCCCccCCC-CCCccEEEEEcCCCcEEEEEeCCCCCCccHHHHHHHHh
Q 028030          142 HKAFAKKY-------RLPYTLLSDEGNKVRKEWGVPADFFG-SLPGRQTYILDKNGVVQLIYNNQFQPEKHIDETLKFLQ  213 (215)
Q Consensus       142 ~~~~~~~~-------~~~~~~~~d~~~~~~~~~g~~~~~~g-~~p~~~~~lid~~G~v~~~~~g~~~~~~~~~~il~~l~  213 (215)
                      .++|++.+       +++|+++.|.++++.+.||+.....| .+|  ++||||++|+|++.+.+....+..++++++.|+
T Consensus       117 ~~~~~~~~~~~~~~~~~~~~~l~D~~~~~~~~ygv~~~~~g~~~P--~~~lID~~G~I~~~~~g~~~~~~~~~~il~~l~  194 (222)
T 3ztl_A          117 HLAWDNLDRKSGGLGHMKIPLLADRKQEISKAYGVFDEEDGNAFR--GLFIIDPNGILRQITINDKPVGRSVDETLRLLD  194 (222)
T ss_dssp             HHHHHHSCGGGTSCCSCSSCEEECSSSHHHHHTTCBCTTTSSBCE--EEEEECTTSEEEEEEEECTTBCCCHHHHHHHHH
T ss_pred             HHHHHHHhhhhccccccceeEEeCCchHHHHHcCCeecCCCCccc--eEEEECCCCeEEEEEecCCCCCCCHHHHHHHHH
Confidence            99999987       89999999999999999999843323 255  999999999999999887666667888888876


Q ss_pred             c
Q 028030          214 S  214 (215)
Q Consensus       214 ~  214 (215)
                      +
T Consensus       195 ~  195 (222)
T 3ztl_A          195 A  195 (222)
T ss_dssp             H
T ss_pred             H
Confidence            3

>2bmx_A Alkyl hydroperoxidase C; peroxiredoxin, antioxidant defense system, oxidoreductase, structural proteomics in EURO spine; 2.4A {Mycobacterium tuberculosis} SCOP: c.47.1.10

Probab=99.97  E-value=1.2e-29  Score=197.64  Aligned_cols=144  Identities=26%  Similarity=0.430  Sum_probs=128.5

Q ss_pred             cCCCCCCCCCeEEeCCC-------------C--CeeecCCcCCCcEEEEEEcCCCChhhHHHHHHHHHHHHHHHHcCcEE
Q 028030           67 KVSKGQAPPSFTLKDQE-------------G--RNVSLSKFKGKPVVVYFYPADETPGCTKQACAFRDSYEKFKKAGAEV  131 (215)
Q Consensus        67 ~~~~g~~~P~f~l~~~~-------------g--~~~~l~~~~gk~~ll~f~~a~~C~~C~~~~~~l~~l~~~~~~~~v~v  131 (215)
                      .+.+|+++|+|++.+.+             |  +.+++++++||++||+||+++||++|+.+++.|++++++|++++++|
T Consensus         3 ~l~~G~~~P~f~l~~~~~~~~~~~~~~~~~G~~~~v~l~~~~gk~vvl~F~~a~~C~~C~~~~~~l~~l~~~~~~~~v~v   82 (195)
T 2bmx_A            3 LLTIGDQFPAYQLTALIGGDLSKVDAKQPGDYFTTITSDEHPGKWRVVFFWPKDFTFVCPTEIAAFSKLNDEFEDRDAQI   82 (195)
T ss_dssp             BCCTTCBCCCCEEEEECSSCGGGSCCSSGGGGEEEEETTSSTTCEEEEEECSCTTSCCCHHHHHHHHHTHHHHHTTTEEE
T ss_pred             cCCCCCcCCCcCcccccccccccccccccCCCccEeeHHHhCCCcEEEEEEcCCCCCCcHHHHHHHHHHHHHHHHCCCEE
Confidence            57899999999999988             7  89999999999999999999999999999999999999999889999


Q ss_pred             EEEeCCCHHHHHHHHHHc----CCCeEEEEcCChhHHHHhCCCccCCC-CCCccEEEEEcCCCcEEEEEeCCCCCCccHH
Q 028030          132 IGISGDDSSSHKAFAKKY----RLPYTLLSDEGNKVRKEWGVPADFFG-SLPGRQTYILDKNGVVQLIYNNQFQPEKHID  206 (215)
Q Consensus       132 v~vs~d~~~~~~~~~~~~----~~~~~~~~d~~~~~~~~~g~~~~~~g-~~p~~~~~lid~~G~v~~~~~g~~~~~~~~~  206 (215)
                      |+|+.|+++.+++|++++    +++|+++.|.+.++.+.|++... .| .+|  ++||||++|+|++.+.|....+...+
T Consensus        83 v~Vs~d~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~v~~~-~g~~~P--~~~lid~~G~i~~~~~g~~~~~~~~~  159 (195)
T 2bmx_A           83 LGVSIDSEFAHFQWRAQHNDLKTLPFPMLSDIKRELSQAAGVLNA-DGVADR--VTFIVDPNNEIQFVSATAGSVGRNVD  159 (195)
T ss_dssp             EEEESSCHHHHHHHHHHCTTGGGCCSCEEECTTSHHHHHHTCBCT-TSSBCE--EEEEECTTSBEEEEEEECTTCCCCHH
T ss_pred             EEEECCCHHHHHHHHHHhccccCCceeEEeCCchHHHHHhCCccc-CCCccc--eEEEEcCCCeEEEEEecCCCCCCCHH
Confidence            999999999999999998    89999999999999999999832 12 267  99999999999999988654445667


Q ss_pred             HHHHHHh
Q 028030          207 ETLKFLQ  213 (215)
Q Consensus       207 ~il~~l~  213 (215)
                      ++++.|+
T Consensus       160 ~l~~~l~  166 (195)
T 2bmx_A          160 EVLRVLD  166 (195)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHH
Confidence            7777665

>2h01_A 2-Cys peroxiredoxin; thioredoxin peroxidase, structural genomics, SGC, structural genomics consortium, oxidoreductase; 2.30A {Plasmodium yoelii} SCOP: c.47.1.10

Probab=99.97  E-value=7.5e-30  Score=198.32  Aligned_cols=142  Identities=30%  Similarity=0.462  Sum_probs=127.3

Q ss_pred             CCCCCCCCeEEeCC--CC--CeeecCCc-CCCcEEEEEEcCCCChhhHHHHHHHHHHHHHHHHcCcEEEEEeCCCHHHHH
Q 028030           69 SKGQAPPSFTLKDQ--EG--RNVSLSKF-KGKPVVVYFYPADETPGCTKQACAFRDSYEKFKKAGAEVIGISGDDSSSHK  143 (215)
Q Consensus        69 ~~g~~~P~f~l~~~--~g--~~~~l~~~-~gk~~ll~f~~a~~C~~C~~~~~~l~~l~~~~~~~~v~vv~vs~d~~~~~~  143 (215)
                      ++|+++|+|++.+.  +|  +.++++++ +||++||+||+++||++|..+++.|++++++|+++|++||+|+.|+++.++
T Consensus         1 ~~G~~aP~f~l~~~~~~G~~~~~~l~~~~~gk~vvl~F~~a~~C~~C~~~~~~l~~~~~~~~~~~v~vv~Is~d~~~~~~   80 (192)
T 2h01_A            1 AFQGQAPSFKAEAVFGDNTFGEVSLSDFIGKKYVLLYFYPLDFTFVCPSEIIALDKALDSFKERNVELLGCSVDSKFTHL   80 (192)
T ss_dssp             CCSSBCCCCEEEEECTTSCEEEEEGGGGTTTCEEEEEECSCSSCSSCCHHHHHHHHTHHHHHHTTEEEEEEESSCHHHHH
T ss_pred             CCCCcCCCcEeEeeecCCceeEEeHHHHcCCCeEEEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEEeCCHHHHH
Confidence            47999999999998  99  99999999 999999999999999999999999999999999889999999999999999


Q ss_pred             HHHHHc-------CCCeEEEEcCChhHHHHhCCCccCCC-CCCccEEEEEcCCCcEEEEEeCCCCCCccHHHHHHHHh
Q 028030          144 AFAKKY-------RLPYTLLSDEGNKVRKEWGVPADFFG-SLPGRQTYILDKNGVVQLIYNNQFQPEKHIDETLKFLQ  213 (215)
Q Consensus       144 ~~~~~~-------~~~~~~~~d~~~~~~~~~g~~~~~~g-~~p~~~~~lid~~G~v~~~~~g~~~~~~~~~~il~~l~  213 (215)
                      +|++++       +++|+++.|.++++.+.||+.. ..| .+|  ++||||++|+|++.+.|....+.+.+++++.|+
T Consensus        81 ~~~~~~~~~~~~~~~~~~~l~D~~~~~~~~~gv~~-~~g~~~P--~~~liD~~G~i~~~~~g~~~~~~~~~~l~~~l~  155 (192)
T 2h01_A           81 AWKKTPLSQGGIGNIKHTLISDISKSIARSYDVLF-NESVALR--AFVLIDKQGVVQHLLVNNLALGRSVDEILRLID  155 (192)
T ss_dssp             HHHTSCGGGTCCCSCSSEEEECTTSHHHHHTTCEE-TTTEECC--EEEEECTTSBEEEEEEGGGSSGGGHHHHHHHHH
T ss_pred             HHHHhHHhhCCccCCCcCeEECCcHHHHHHhCCcC-cCCceee--EEEEEcCCCEEEEEEeCCCCCCCCHHHHHHHHH
Confidence            999988       7899999999999999999983 112 267  999999999999999886555566777777665

>2wfc_A Peroxiredoxin 5, PRDX5; oxidoreductase, antioxidant enzymes; 1.75A {Arenicola marina}

Probab=99.97  E-value=1.4e-29  Score=193.16  Aligned_cols=143  Identities=20%  Similarity=0.301  Sum_probs=125.0

Q ss_pred             cCCCCCCCCCeEEe-CCCCCeeecCCc-CCCcEEEEEEcCCCChhhHH-HHHHHHHHHHHHHHcCc-EEEEEeCCCHHHH
Q 028030           67 KVSKGQAPPSFTLK-DQEGRNVSLSKF-KGKPVVVYFYPADETPGCTK-QACAFRDSYEKFKKAGA-EVIGISGDDSSSH  142 (215)
Q Consensus        67 ~~~~g~~~P~f~l~-~~~g~~~~l~~~-~gk~~ll~f~~a~~C~~C~~-~~~~l~~l~~~~~~~~v-~vv~vs~d~~~~~  142 (215)
                      .+++|+++|+|+++ +.+|+.++|+++ +||++||+||+++||++|.. ++|.|++++++|+++|+ +||+|+.|+++.+
T Consensus         2 ~l~~G~~aP~f~l~~~~~G~~v~L~d~~~Gk~vvl~f~~a~wcp~C~~~e~p~l~~~~~~~~~~gv~~vv~Is~d~~~~~   81 (167)
T 2wfc_A            2 PIKEGDKLPAVTVFGATPNDKVNMAELFAGKKGVLFAVPGAFTPGSSKTHLPGYVEQAAAIHGKGVDIIACMAVNDSFVM   81 (167)
T ss_dssp             CCCTTCBCCCCEEESSSTTCEEEHHHHTTTSEEEEEEESCTTCHHHHHTHHHHHHHTHHHHHHTTCCEEEEEESSCHHHH
T ss_pred             CCCCCCcCCCcEeecCCCCcEEeHHHHhCCCcEEEEEeCCCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEEeCCCHHHH
Confidence            36789999999999 999999999998 99999999988999999999 99999999999999999 9999999999999


Q ss_pred             HHHHHHcCCC--eEEEEcCChhHHHHhCCCccC---CC---CCCccEEEEEcCCCcEEEEEeCCCCC---CccHHHHHHH
Q 028030          143 KAFAKKYRLP--YTLLSDEGNKVRKEWGVPADF---FG---SLPGRQTYILDKNGVVQLIYNNQFQP---EKHIDETLKF  211 (215)
Q Consensus       143 ~~~~~~~~~~--~~~~~d~~~~~~~~~g~~~~~---~g---~~p~~~~~lid~~G~v~~~~~g~~~~---~~~~~~il~~  211 (215)
                      ++|+++++++  |+++.|+++++.+.||+....   +|   ..|  .+||| ++|+|++.+.+....   -...+.+++.
T Consensus        82 ~~~~~~~~~~~~fp~l~D~~~~~~~~~gv~~~~~~~~g~~~~~p--~t~lI-~~G~I~~~~~~~~~~~~~~~~~~~~~~~  158 (167)
T 2wfc_A           82 DAWGKAHGADDKVQMLADPGGAFTKAVDMELDLSAVLGNVRSKR--YSLVI-EDGVVTKVNVEPDGKGLTCSLAPNILSQ  158 (167)
T ss_dssp             HHHHHHTTCTTTSEEEECTTSHHHHHTTCEECCHHHHSSCEECC--EEEEE-ETTEEEEEEECTTSSSSSTTSHHHHHHH
T ss_pred             HHHHHhcCCCcceEEEECCCCcHHHHcCCccccccccCcccceE--EEEEE-eCCEEEEEEecCCCCcceeccHHHHHHH
Confidence            9999999999  999999999999999997521   11   135  99999 999999998875322   2455666665


Q ss_pred             H
Q 028030          212 L  212 (215)
Q Consensus       212 l  212 (215)
                      |
T Consensus       159 ~  159 (167)
T 2wfc_A          159 L  159 (167)
T ss_dssp             H
T ss_pred             h
Confidence            5

>1zye_A Thioredoxin-dependent peroxide reductase; catenane, dodecamer, peroxiredoxin, oxidoreductase; 3.30A {Bos taurus} SCOP: c.47.1.10

Probab=99.97  E-value=1.7e-29  Score=200.72  Aligned_cols=146  Identities=31%  Similarity=0.504  Sum_probs=128.1

Q ss_pred             ccCCCCCCCCCeEEeC---CCCCeeecCCcCCCcEEEEEEcCCCChhhHHHHHHHHHHHHHHHHcCcEEEEEeCCCHHHH
Q 028030           66 AKVSKGQAPPSFTLKD---QEGRNVSLSKFKGKPVVVYFYPADETPGCTKQACAFRDSYEKFKKAGAEVIGISGDDSSSH  142 (215)
Q Consensus        66 ~~~~~g~~~P~f~l~~---~~g~~~~l~~~~gk~~ll~f~~a~~C~~C~~~~~~l~~l~~~~~~~~v~vv~vs~d~~~~~  142 (215)
                      ..+.+|+++|+|++++   .+|+.+++++++||++||+||+++||++|+.+++.|++++++|+++|++||+|+.|+.+.+
T Consensus        25 ~~l~~G~~aP~f~l~~~~~~~g~~v~l~d~~Gk~vll~F~pa~~Cp~C~~~~~~l~~l~~~~~~~~v~vv~Is~D~~~~~  104 (220)
T 1zye_A           25 PAPAVTQHAPYFKGTAVVSGEFKEISLDDFKGKYLVLFFYPLDFTFVCPTEIIAFSDKASEFHDVNCEVVAVSVDSHFSH  104 (220)
T ss_dssp             --CCTTSBCCCCEEEEECSSSEEEEEGGGGTTSEEEEEECSCTTCSSSHHHHHHHHHHHHHHHHTTEEEEEEESSCHHHH
T ss_pred             CcccCCCCCCCcEEEeeeCCCCcEEEHHHhCCCeEEEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCHHHH
Confidence            3578999999999984   5789999999999999999999999999999999999999999998999999999999999


Q ss_pred             HHHHHHc-------CCCeEEEEcCChhHHHHhCCCccCCC-CCCccEEEEEcCCCcEEEEEeCCCCCCccHHHHHHHHh
Q 028030          143 KAFAKKY-------RLPYTLLSDEGNKVRKEWGVPADFFG-SLPGRQTYILDKNGVVQLIYNNQFQPEKHIDETLKFLQ  213 (215)
Q Consensus       143 ~~~~~~~-------~~~~~~~~d~~~~~~~~~g~~~~~~g-~~p~~~~~lid~~G~v~~~~~g~~~~~~~~~~il~~l~  213 (215)
                      ++|++++       +++|+++.|.+.++.+.||+.....| .+|  ++||||++|+|++.+.|......+.+++++.|+
T Consensus       105 ~~~~~~~~~~~g~~~~~fp~l~D~~~~i~~~ygv~~~~~g~~~P--~~~liD~~G~I~~~~~g~~~~~~~~~ell~~l~  181 (220)
T 1zye_A          105 LAWINTPRKNGGLGHMNIALLSDLTKQISRDYGVLLEGPGLALR--GLFIIDPNGVIKHLSVNDLPVGRSVEETLRLVK  181 (220)
T ss_dssp             HHHHTSCGGGTCCCSCSSEEEECTTSHHHHHTTCEETTTTEECE--EEEEECTTSBEEEEEEECTTCCCCHHHHHHHHH
T ss_pred             HHHHHHHHHhCCCcCCceEEEECCcHHHHHHhCCeecCCCcccc--eEEEECCCCEEEEEEecCCCCCCCHHHHHHHHH
Confidence            9999987       78999999999999999999832222 266  999999999999998887665566777777665

>3uma_A Hypothetical peroxiredoxin protein; nysgrc, PSI biology, structural genomics, NEW YORK structura genomics research consortium; 2.20A {Sinorhizobium meliloti}

Probab=99.97  E-value=1.3e-29  Score=196.27  Aligned_cols=146  Identities=22%  Similarity=0.329  Sum_probs=125.7

Q ss_pred             ccCCCCCCCCCeEEeCC--CC-CeeecCC-cCCCcEEEEEEcCCCChhhHH-HHHHHHHHHHHHHHcCcE-EEEEeCCCH
Q 028030           66 AKVSKGQAPPSFTLKDQ--EG-RNVSLSK-FKGKPVVVYFYPADETPGCTK-QACAFRDSYEKFKKAGAE-VIGISGDDS  139 (215)
Q Consensus        66 ~~~~~g~~~P~f~l~~~--~g-~~~~l~~-~~gk~~ll~f~~a~~C~~C~~-~~~~l~~l~~~~~~~~v~-vv~vs~d~~  139 (215)
                      ..+++|+++|+|++++.  +| ++++|++ ++||++||+||+++||++|+. +++.|++++++|+++|++ |++|+.|++
T Consensus        24 ~~l~vG~~aPdf~l~~~~~~G~~~v~L~d~~~Gk~vvL~f~~a~wcp~C~~~e~p~l~~~~~~~~~~gv~~vv~Is~d~~  103 (184)
T 3uma_A           24 MTIAVGDKLPNATFKEKTADGPVEVTTELLFKGKRVVLFAVPGAFTPTCSLNHLPGYLENRDAILARGVDDIAVVAVNDL  103 (184)
T ss_dssp             SCCCTTCBCCCCEEEEEETTEEEEEEHHHHHTTSEEEEEEESCTTCHHHHHTHHHHHHHTHHHHHTTTCCEEEEEESSCH
T ss_pred             CcCCCCCCCCCcEeecccCCCceEEeHHHHhCCCCEEEEEEcCCCCCCcCHHHHHHHHHHHHHHHHcCCCEEEEEECCCH
Confidence            34789999999999998  99 9999999 799988888777999999999 899999999999999999 999999999


Q ss_pred             HHHHHHHHHcCCC--eEEEEcCChhHHHHhCCCccC--CC--CCCccEEEEEcCCCcEEEEEeCCCCC---CccHHHHHH
Q 028030          140 SSHKAFAKKYRLP--YTLLSDEGNKVRKEWGVPADF--FG--SLPGRQTYILDKNGVVQLIYNNQFQP---EKHIDETLK  210 (215)
Q Consensus       140 ~~~~~~~~~~~~~--~~~~~d~~~~~~~~~g~~~~~--~g--~~p~~~~~lid~~G~v~~~~~g~~~~---~~~~~~il~  210 (215)
                      +.+++|+++++++  |+++.|+++++.++||+....  .|  ....|.+|||| +|+|++.+.+....   ...++++|+
T Consensus       104 ~~~~~f~~~~~~~~~fp~l~D~~~~va~~yGv~~~~~~~g~g~~~~r~tfiId-dG~I~~~~~~~~~g~~~~~~~~~vL~  182 (184)
T 3uma_A          104 HVMGAWATHSGGMGKIHFLSDWNAAFTKAIGMEIDLSAGTLGIRSKRYSMLVE-DGVVKALNIEESPGQATASGAAAMLE  182 (184)
T ss_dssp             HHHHHHHHHHTCTTTSEEEECTTCHHHHHTTCEEEEGGGTCEEEECCEEEEEE-TTEEEEEEECSSTTCCSTTSHHHHHH
T ss_pred             HHHHHHHHHhCCCCceEEEEcCchHHHHHcCCceeccccCCcccceeEEEEEC-CCEEEEEEEeCCCCCCcCCCHHHHHh
Confidence            9999999999999  999999999999999997531  12  11234899997 99999999875322   266777877


Q ss_pred             HH
Q 028030          211 FL  212 (215)
Q Consensus       211 ~l  212 (215)
                      .|
T Consensus       183 ~L  184 (184)
T 3uma_A          183 LL  184 (184)
T ss_dssp             HC
T ss_pred             hC
Confidence            54

>2v2g_A Peroxiredoxin 6; oxidoreductase, antioxidant enzymes; 1.60A {Arenicola marina} PDB: 2v32_A 2v41_A

Probab=99.96  E-value=1.1e-29  Score=203.41  Aligned_cols=146  Identities=23%  Similarity=0.392  Sum_probs=127.7

Q ss_pred             CCCCCCCCCeEEeCCCCCeeecCCcCCC-cEEEEEEcCCCChhhHHHHHHHHHHHHHHHHcCcEEEEEeCCCHHHHHHHH
Q 028030           68 VSKGQAPPSFTLKDQEGRNVSLSKFKGK-PVVVYFYPADETPGCTKQACAFRDSYEKFKKAGAEVIGISGDDSSSHKAFA  146 (215)
Q Consensus        68 ~~~g~~~P~f~l~~~~g~~~~l~~~~gk-~~ll~f~~a~~C~~C~~~~~~l~~l~~~~~~~~v~vv~vs~d~~~~~~~~~  146 (215)
                      +.+|+++|+|++.+.+| .+++++++|| ++||+||+++||++|..+++.|++++++|+++|++||+||.|+.+.+++|+
T Consensus         3 l~iG~~aPdF~l~~~~G-~v~l~d~~Gk~~vvL~f~pa~~cpvC~~el~~l~~l~~ef~~~~v~vigIS~D~~~~~~~~~   81 (233)
T 2v2g_A            3 ITLGEVFPNFEADSTIG-KLKFHDWLGNSWGVLFSHPRDFTPVSTTELGRVIQLEGDFKKRGVKLIALSCDNVADHKEWS   81 (233)
T ss_dssp             CCTTCBCCCCEEEETTC-CEEHHHHHCSSEEEEEECSCSSCHHHHHHHHHHHHTHHHHHHTTEEEEEEESSCHHHHHHHH
T ss_pred             CCCCCCCCCcEEecCCC-CEEHHHHCCCCeEEEEEECCCCCCCcHHHHHHHHHHHHHHHHcCCEEEEEcCCCHHHHHHHH
Confidence            67899999999999999 8999999998 999999999999999999999999999999999999999999999999999


Q ss_pred             H------Hc--CCCeEEEEcCChhHHHHhCCCccC----CC-CCCccEEEEEcCCCcEEEEEeCCCCCCccHHHHHHHHh
Q 028030          147 K------KY--RLPYTLLSDEGNKVRKEWGVPADF----FG-SLPGRQTYILDKNGVVQLIYNNQFQPEKHIDETLKFLQ  213 (215)
Q Consensus       147 ~------~~--~~~~~~~~d~~~~~~~~~g~~~~~----~g-~~p~~~~~lid~~G~v~~~~~g~~~~~~~~~~il~~l~  213 (215)
                      +      ++  +++|+++.|.++++++.||+....    .| ....|.+||||++|+|++.+.+......+.+++++.|+
T Consensus        82 ~~i~~~~~~~~~~~fpil~D~~~~va~~ygv~~~~~~~~~g~~~~~p~~fiID~~G~I~~~~~~~~~~gr~~~eilr~l~  161 (233)
T 2v2g_A           82 EDVKCLSGVKGDMPYPIIADETRELAVKLGMVDPDERTSTGMPLTCRAVFIIGPDKKLKLSILYPATTGRNFSEILRVID  161 (233)
T ss_dssp             HHHHHHHTCCSSCSSCEEECTTCHHHHHTTCEEEEEECTTCCEEECEEEEEECTTSBEEEEEEECTTBCCCHHHHHHHHH
T ss_pred             HHHHHhhCcccCCceEEEECChHHHHHHhCCcCcccccCCCcccccceEEEECCCCEEEEEEecCCCCCCCHHHHHHHHH
Confidence            8      56  889999999999999999996321    11 12234999999999999998876555667888888776


Q ss_pred             c
Q 028030          214 S  214 (215)
Q Consensus       214 ~  214 (215)
                      +
T Consensus       162 ~  162 (233)
T 2v2g_A          162 S  162 (233)
T ss_dssp             H
T ss_pred             H
Confidence            3

>2a4v_A Peroxiredoxin DOT5; yeast nuclear thiol peroxidase, atypical 2-Cys peroxiredoxin, oxidoreductase; 1.80A {Saccharomyces cerevisiae} SCOP: c.47.1.10

Probab=99.96  E-value=1.1e-29  Score=191.44  Aligned_cols=144  Identities=30%  Similarity=0.509  Sum_probs=123.4

Q ss_pred             ccCCCCCCCCCeEEeCCCCCeeecCCcCCC--cEEEEEEcCCCChhhHHHHHHHHHHHHHHHHcCcEEEEEeCCCHHHHH
Q 028030           66 AKVSKGQAPPSFTLKDQEGRNVSLSKFKGK--PVVVYFYPADETPGCTKQACAFRDSYEKFKKAGAEVIGISGDDSSSHK  143 (215)
Q Consensus        66 ~~~~~g~~~P~f~l~~~~g~~~~l~~~~gk--~~ll~f~~a~~C~~C~~~~~~l~~l~~~~~~~~v~vv~vs~d~~~~~~  143 (215)
                      ..+++|+++|+|++.|.+|+++++++++||  ++||+||+++||++|..+++.|++++++|+++| +||+|+.|+++.++
T Consensus         5 ~~~~~G~~~P~f~l~~~~G~~v~l~~~~gk~~~vvl~f~~~~~c~~C~~~~~~l~~~~~~~~~~~-~vv~is~d~~~~~~   83 (159)
T 2a4v_A            5 NELEIGDPIPDLSLLNEDNDSISLKKITENNRVVVFFVYPRASTPGSTRQASGFRDNYQELKEYA-AVFGLSADSVTSQK   83 (159)
T ss_dssp             TCCCTTCBCCSCEEECTTSCEEEHHHHHHHCSEEEEEECSSSSSHHHHHHHHHHHHHHHHHTTTC-EEEEEESCCHHHHH
T ss_pred             CcCCCCCCCCCeEEECCCCCEEeHHHHhCCCCeEEEEEcCCCCCCCHHHHHHHHHHHHHHHHhCC-cEEEEeCCCHHHHH
Confidence            457899999999999999999999999886  899999889999999999999999999999889 99999999999999


Q ss_pred             HHHHHcCCCeEEEEcCChhHHHHhCCCccC-CCCCCccEEEEEcCCCcEEEEEeCCCCC---CccHHHHHHHHh
Q 028030          144 AFAKKYRLPYTLLSDEGNKVRKEWGVPADF-FGSLPGRQTYILDKNGVVQLIYNNQFQP---EKHIDETLKFLQ  213 (215)
Q Consensus       144 ~~~~~~~~~~~~~~d~~~~~~~~~g~~~~~-~g~~p~~~~~lid~~G~v~~~~~g~~~~---~~~~~~il~~l~  213 (215)
                      +|+++++++|+++.|.++++.+.||+.... .|..|  .+||| ++|+|++.+.|....   +..+++++++++
T Consensus        84 ~~~~~~~~~~~~l~D~~~~~~~~~gv~~~p~~g~~~--~~~li-~~G~i~~~~~g~~~~~~~~~~~~~l~~~l~  154 (159)
T 2a4v_A           84 KFQSKQNLPYHLLSDPKREFIGLLGAKKTPLSGSIR--SHFIF-VDGKLKFKRVKISPEVSVNDAKKEVLEVAE  154 (159)
T ss_dssp             HHHHHHTCSSEEEECTTCHHHHHHTCBSSSSSCBCC--EEEEE-ETTEEEEEEESCCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHhCCCceEEECCccHHHHHhCCcccccCCccc--eEEEE-cCCEEEEEEccCCccccHHHHHHHHHHHHH
Confidence            999999999999999999999999998632 22234  89999 999999999874321   234444544443

>1zof_A Alkyl hydroperoxide-reductase; decamer, toroide-shaped complex, oxidoreductase; 2.95A {Helicobacter pylori} SCOP: c.47.1.10

Probab=99.96  E-value=1.5e-29  Score=197.51  Aligned_cols=143  Identities=23%  Similarity=0.410  Sum_probs=127.1

Q ss_pred             CCCCCCCCCeEEeCC--CCC---eeecCCc-CCCcEEEEEEcCCCChhhHHHHHHHHHHHHHHHHcCcEEEEEeCCCHHH
Q 028030           68 VSKGQAPPSFTLKDQ--EGR---NVSLSKF-KGKPVVVYFYPADETPGCTKQACAFRDSYEKFKKAGAEVIGISGDDSSS  141 (215)
Q Consensus        68 ~~~g~~~P~f~l~~~--~g~---~~~l~~~-~gk~~ll~f~~a~~C~~C~~~~~~l~~l~~~~~~~~v~vv~vs~d~~~~  141 (215)
                      +++|+++|+|++.+.  +|+   .++++++ +||++||+||+++||++|+.+++.|++++++|+++|++||+|+.|+++.
T Consensus         1 ~~~G~~~P~f~l~~~~~~G~~~~~v~l~~~~~gk~vvl~F~~a~~C~~C~~~~~~l~~l~~~~~~~~v~vv~Is~d~~~~   80 (198)
T 1zof_A            1 MVVTKLAPDFKAPAVLGNNEVDEHFELSKNLGKNGVILFFWPKDFTFVCPTEIIAFDKRVKDFHEKGFNVIGVSIDSEQV   80 (198)
T ss_dssp             CCTTSBCCCCEEEEECTTSCEEEEEETTTSCCSSEEEEEECSCTTCSSCCTHHHHHHHTHHHHHHTTEEEEEEESSCHHH
T ss_pred             CCCCCcCCceEeecccCCCcccceEEHHHHhCCCcEEEEEECCCCCCchHHHHHHHHHHHHHHHHcCCEEEEEECCCHHH
Confidence            468999999999998  998   9999999 9999999999999999999999999999999999899999999999999


Q ss_pred             HHHHHHH-------cCCCeEEEEcCChhHHHHhCCCccCCC-CCCccEEEEEcCCCcEEEEEeCCCCCCccHHHHHHHHh
Q 028030          142 HKAFAKK-------YRLPYTLLSDEGNKVRKEWGVPADFFG-SLPGRQTYILDKNGVVQLIYNNQFQPEKHIDETLKFLQ  213 (215)
Q Consensus       142 ~~~~~~~-------~~~~~~~~~d~~~~~~~~~g~~~~~~g-~~p~~~~~lid~~G~v~~~~~g~~~~~~~~~~il~~l~  213 (215)
                      +++|+++       ++++|+++.|.++++.+.||+.... | .+|  ++||||++|+|++.+.|....+...+++++.|+
T Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~v~~~~-g~~~P--~~~lid~~G~i~~~~~g~~~~~~~~~~l~~~l~  157 (198)
T 1zof_A           81 HFAWKNTPVEKGGIGQVSFPMVADITKSISRDYDVLFEE-AIALR--GAFLIDKNMKVRHAVINDLPLGRNADEMLRMVD  157 (198)
T ss_dssp             HHHHHTSCGGGTCCCCCSSCEEECTTSHHHHHTTCEETT-TEECE--EEEEEETTTEEEEEEEESSSCCCHHHHHHHHHH
T ss_pred             HHHHHHhhhhcccccCceeEEEECCchHHHHHhCCcccC-Ccccc--eEEEECCCCEEEEEEecCCCCCCCHHHHHHHHH
Confidence            9999998       8899999999999999999998211 1 267  999999999999999886554555666666654

>1prx_A HORF6; peroxiredoxin, hydrogen peroxide, redox regulation, cellular signaling, antioxidant; 2.00A {Homo sapiens} SCOP: c.47.1.10

Probab=99.96  E-value=1.1e-28  Score=196.53  Aligned_cols=146  Identities=21%  Similarity=0.365  Sum_probs=125.6

Q ss_pred             cCCCCCCCCCeEEeCCCCCeeecCCcCCC-cEEEEEEcCCCChhhHHHHHHHHHHHHHHHHcCcEEEEEeCCCHHHHHHH
Q 028030           67 KVSKGQAPPSFTLKDQEGRNVSLSKFKGK-PVVVYFYPADETPGCTKQACAFRDSYEKFKKAGAEVIGISGDDSSSHKAF  145 (215)
Q Consensus        67 ~~~~g~~~P~f~l~~~~g~~~~l~~~~gk-~~ll~f~~a~~C~~C~~~~~~l~~l~~~~~~~~v~vv~vs~d~~~~~~~~  145 (215)
                      .+.+|+++|+|++.+.+| .+++++++|| ++||+||+++||++|..+++.|++++++|+++|++||+||.|+.+.+++|
T Consensus         4 ~l~~G~~aP~F~l~~~~G-~v~l~d~~Gk~~vvL~~~~a~~cp~C~~el~~l~~l~~~f~~~~v~vi~IS~D~~~~~~~~   82 (224)
T 1prx_A            4 GLLLGDVAPNFEANTTVG-RIRFHDFLGDSWGILFSHPRDFTPVCTTELGRAAKLAPEFAKRNVKLIALSIDSVEDHLAW   82 (224)
T ss_dssp             -CCTTCBCCCCEEEETTE-EEEHHHHHTTSEEEEEEESCSSCHHHHHHHHHHHHHHHHHHTTTEEEEEEESSCHHHHHHH
T ss_pred             cCCCcCCCCCcEEecCCC-CEEHHHHcCCCeEEEEEECCCCCCCcHHHHHHHHHHHHHHHHCCCEEEEEcCCCHHHHHHH
Confidence            467999999999999999 9999999997 76776655999999999999999999999999999999999999999999


Q ss_pred             HHH----------cCCCeEEEEcCChhHHHHhCCCccC----CC-CCCccEEEEEcCCCcEEEEEeCCCCCCccHHHHHH
Q 028030          146 AKK----------YRLPYTLLSDEGNKVRKEWGVPADF----FG-SLPGRQTYILDKNGVVQLIYNNQFQPEKHIDETLK  210 (215)
Q Consensus       146 ~~~----------~~~~~~~~~d~~~~~~~~~g~~~~~----~g-~~p~~~~~lid~~G~v~~~~~g~~~~~~~~~~il~  210 (215)
                      +++          ++++|+++.|.++++++.||+....    .| ....|++||||++|+|++.+.+......+.+++++
T Consensus        83 ~~~i~~~~~~~~~~~~~fpil~D~~~~va~~ygv~~~~~~~~~g~~~~~p~~fiID~~G~I~~~~~~~~~~gr~~~eil~  162 (224)
T 1prx_A           83 SKDINAYNSEEPTEKLPFPIIDDRNRELAILLGMLDPAEKDEKGMPVTARVVFVFGPDKKLKLSILYPATTGRNFDEILR  162 (224)
T ss_dssp             HHHHHHHTTSCCCSCCSSCEEECTTCHHHHHTTSSCSCTTCSSSCCTTCCEEEEECTTSBEEEEEECCTTBCCCHHHHHH
T ss_pred             HHHHHHhhCcccccCcCcceeecCchHHHHHhCCCCcccccCCCccccceEEEEECCCCEEEEEEecCCCCCCCHHHHHH
Confidence            987          7899999999999999999996421    11 12234999999999999999876555567888888


Q ss_pred             HHh
Q 028030          211 FLQ  213 (215)
Q Consensus       211 ~l~  213 (215)
                      .|+
T Consensus       163 ~i~  165 (224)
T 1prx_A          163 VVI  165 (224)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            775

>3eur_A Uncharacterized protein; PSI2,MCSG, conserved protein, structural genomics, protein S initiative, midwest center for structural genomics; HET: MSE; 1.30A {Bacteroides fragilis}

Probab=99.96  E-value=2.2e-28  Score=180.72  Aligned_cols=123  Identities=19%  Similarity=0.242  Sum_probs=114.3

Q ss_pred             cCCCCCCCCCeEEeCCCCCeeecCCcCCCcEEEEEEcCCCChhhHHHHHHHHH---HHHHHHHcCcEEEEEeCCCH-HHH
Q 028030           67 KVSKGQAPPSFTLKDQEGRNVSLSKFKGKPVVVYFYPADETPGCTKQACAFRD---SYEKFKKAGAEVIGISGDDS-SSH  142 (215)
Q Consensus        67 ~~~~g~~~P~f~l~~~~g~~~~l~~~~gk~~ll~f~~a~~C~~C~~~~~~l~~---l~~~~~~~~v~vv~vs~d~~-~~~  142 (215)
                      ...+|+++|+|++.+.+|+.+++++++||++||+|| ++||++|+.++|.|.+   +++++++.+++||+|+.|+. +.+
T Consensus         4 ~~~~G~~ap~f~l~~~~g~~~~l~~~~gk~vll~F~-a~wC~~C~~~~~~l~~~~~l~~~~~~~~~~vi~i~~d~~~~~~   82 (142)
T 3eur_A            4 KNRLGTKALNFTYTLDSGVKGTLYQFPAEYTLLFIN-NPGCHACAEMIEGLKASPVINGFTAAKKLKVLSIYPDEELDEW   82 (142)
T ss_dssp             TTCTTSBCCCCEEEETTSCEEETTTCCCSEEEEEEC-CSSSHHHHHHHHHHHHCHHHHHHHHTTSEEEEEEECSSCHHHH
T ss_pred             hhcCCCccCCcEEEcCCCCEeeHHHcCCCEEEEEEE-CCCCccHHHHHHHHhhhHHHHHHhccCCeEEEEEEcCCCHHHH
Confidence            467999999999999999999999999999999999 9999999999999999   99999988999999999765 789


Q ss_pred             HHHHHHcCCCeEEEEcCChh--HHHHhCCCccCCCCCCccEEEEEcCCCcEEEEEeC
Q 028030          143 KAFAKKYRLPYTLLSDEGNK--VRKEWGVPADFFGSLPGRQTYILDKNGVVQLIYNN  197 (215)
Q Consensus       143 ~~~~~~~~~~~~~~~d~~~~--~~~~~g~~~~~~g~~p~~~~~lid~~G~v~~~~~g  197 (215)
                      ++++++++++|+.+.|.++.  +.+.|++..     +|  ++||||++|+|++...+
T Consensus        83 ~~~~~~~~~~~~~~~d~~~~~~~~~~~~v~~-----~P--~~~lid~~G~i~~~~~~  132 (142)
T 3eur_A           83 KKHRNDFAKEWTNGYDKELVIKNKNLYDLRA-----IP--TLYLLDKNKTVLLKDAT  132 (142)
T ss_dssp             HHHGGGSCTTSEEEECTTCHHHHTTCSCCTT-----CS--EEEEECTTCBEEEEEEC
T ss_pred             HHHHHhcccccccccCccchhhhhhhcCCCc-----CC--eEEEECCCCcEEecCCC
Confidence            99999999999999998765  788899987     88  99999999999998765

>3fw2_A Thiol-disulfide oxidoreductase; structural genomics, APC61456.1, thiol-disulfide oxidoreduct TLPA-like family, PSI-2; 1.74A {Bacteroides thetaiotaomicron}

Probab=99.96  E-value=1.4e-28  Score=183.43  Aligned_cols=123  Identities=24%  Similarity=0.406  Sum_probs=115.6

Q ss_pred             ccCCCCCCCCCeEEeCCCCCeeecC--CcCCCcEEEEEEcCCCChh--hHHHHHHHHHHHHHH-HHcCcEEEEEeCCCH-
Q 028030           66 AKVSKGQAPPSFTLKDQEGRNVSLS--KFKGKPVVVYFYPADETPG--CTKQACAFRDSYEKF-KKAGAEVIGISGDDS-  139 (215)
Q Consensus        66 ~~~~~g~~~P~f~l~~~~g~~~~l~--~~~gk~~ll~f~~a~~C~~--C~~~~~~l~~l~~~~-~~~~v~vv~vs~d~~-  139 (215)
                      ..+++|+++|+|++.+.+|+.++++  +++||++||+|| ++||++  |+.+++.|++++++| +++|++||+|+.|+. 
T Consensus         3 ~~l~~G~~~p~f~l~~~~g~~~~l~~~~~~gk~vll~F~-a~~C~~v~C~~~~~~l~~l~~~~~~~~~~~~v~v~~d~~~   81 (150)
T 3fw2_A            3 AKSEIGKYAPFFSLPNAKGEKITRSSDAFKQKSLLINFW-ASWNDSISQKQSNSELREIYKKYKKNKYIGMLGISLDVDK   81 (150)
T ss_dssp             CTTSTTSBCCCCCEEBTTCCEECTTSTTTTTSEEEEEEE-CTTCCCHHHHHHHHHHHHHHHHHTTCSSEEEEEEECCSCH
T ss_pred             ccccCCCcCCccEeECCCCCEEecchhhhCCCEEEEEEE-eCCCCchHHHHHHHHHHHHHHHhccCCCeEEEEEEcCCCH
Confidence            4678999999999999999999999  999999999999 999999  999999999999999 777899999999854 


Q ss_pred             HHHHHHHHHcCCCeEEEEcC---ChhHHHHhCCCccCCCCCCccEEEEEcCCCcEEEEEe
Q 028030          140 SSHKAFAKKYRLPYTLLSDE---GNKVRKEWGVPADFFGSLPGRQTYILDKNGVVQLIYN  196 (215)
Q Consensus       140 ~~~~~~~~~~~~~~~~~~d~---~~~~~~~~g~~~~~~g~~p~~~~~lid~~G~v~~~~~  196 (215)
                      +.+++|+++++++|+++.|.   +..+.+.||+..     +|  ++||||++|+|++.+.
T Consensus        82 ~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~v~~-----~P--~~~lid~~G~i~~~~~  134 (150)
T 3fw2_A           82 QQWKDAIKRDTLDWEQVCDFGGLNSEVAKQYSIYK-----IP--ANILLSSDGKILAKNL  134 (150)
T ss_dssp             HHHHHHHHHTTCCSEEECCSCGGGCHHHHHTTCCS-----SS--EEEEECTTSBEEEESC
T ss_pred             HHHHHHHHHhCCCceEEEcCcccchHHHHHcCCCc-----cC--eEEEECCCCEEEEccC
Confidence            89999999999999999998   679999999987     88  9999999999999885

>3ewl_A Uncharacterized conserved protein BF1870; alpha-beta fold, structural genomics, PSI-2, protein structu initiative; 2.00A {Bacteroides fragilis}

Probab=99.96  E-value=3.4e-28  Score=179.33  Aligned_cols=117  Identities=21%  Similarity=0.352  Sum_probs=110.9

Q ss_pred             CCCCCCCCeEEeCCCCCeeecCCcCCCcEEEEEEcCCCChhhHHHHHHHHH---HHHHHHHcCcEEEEEeCC-CHHHHHH
Q 028030           69 SKGQAPPSFTLKDQEGRNVSLSKFKGKPVVVYFYPADETPGCTKQACAFRD---SYEKFKKAGAEVIGISGD-DSSSHKA  144 (215)
Q Consensus        69 ~~g~~~P~f~l~~~~g~~~~l~~~~gk~~ll~f~~a~~C~~C~~~~~~l~~---l~~~~~~~~v~vv~vs~d-~~~~~~~  144 (215)
                      ++|+++|+|++.+.+|+.+++++++||++||+|| ++||++|+.++|.|.+   +++++++++++|++|+.| +.+.+++
T Consensus         2 ~~G~~~p~f~l~~~~g~~~~l~~~~gk~vll~F~-a~~C~~C~~~~~~l~~~~~l~~~~~~~~~~~v~v~~d~~~~~~~~   80 (142)
T 3ewl_A            2 NAGMKAADFTYVTVHGDNSRMSRLKAQYTMLFFY-DPDCSNCRKFEKLFAEIPAFVEMVENGTLRVLAIYPDENREEWAT   80 (142)
T ss_dssp             CTTSBCCCCEEECTTCCEEEGGGCCCSEEEEEEC-CSSCHHHHHHHHHHHTCHHHHHHHHHTSEEEEEEECSSCHHHHHH
T ss_pred             CCCCcCCCCEEECCCCCEEEhhhcCCCEEEEEEE-CCCCccHHHHHHHHHHhHHHHHHhccCCeEEEEEEecCCHHHHHH
Confidence            5899999999999999999999999999999999 9999999999999998   999999889999999998 6788999


Q ss_pred             HHHHcCCCeEEEEcCChhHHH--HhCCCccCCCCCCccEEEEEcCCCcEEE
Q 028030          145 FAKKYRLPYTLLSDEGNKVRK--EWGVPADFFGSLPGRQTYILDKNGVVQL  193 (215)
Q Consensus       145 ~~~~~~~~~~~~~d~~~~~~~--~~g~~~~~~g~~p~~~~~lid~~G~v~~  193 (215)
                      |+++++++|+++.|.++.+..  .|++..     +|  ++++||++|+|++
T Consensus        81 ~~~~~~~~~~~~~d~~~~~~~~~~~~v~~-----~P--~~~lid~~G~i~~  124 (142)
T 3ewl_A           81 KAVYMPQGWIVGWNKAGDIRTRQLYDIRA-----TP--TIYLLDGRKRVIL  124 (142)
T ss_dssp             HHTTSCTTCEEEECTTCHHHHTTCSCCCS-----SS--EEEEECTTCBEEE
T ss_pred             HHHHcCCCcceeeCCccchhhHHHcCCCC-----CC--eEEEECCCCCEEe
Confidence            999999999999999998877  899987     88  9999999999987

>3keb_A Probable thiol peroxidase; structural genomics, APC40679, PSI-2, Pro structure initiative; HET: MSE; 1.80A {Chromobacterium violaceum}

Probab=99.96  E-value=2.3e-28  Score=193.73  Aligned_cols=143  Identities=24%  Similarity=0.260  Sum_probs=124.0

Q ss_pred             ccCCCCCCCCCeEEeCCCCCeeecCCcCCCcEEEEEEcCCCChhhH-----HHHHHHHHHHHHHHHcCcEEEEEeCCCHH
Q 028030           66 AKVSKGQAPPSFTLKDQEGRNVSLSKFKGKPVVVYFYPADETPGCT-----KQACAFRDSYEKFKKAGAEVIGISGDDSS  140 (215)
Q Consensus        66 ~~~~~g~~~P~f~l~~~~g~~~~l~~~~gk~~ll~f~~a~~C~~C~-----~~~~~l~~l~~~~~~~~v~vv~vs~d~~~  140 (215)
                      ..+++|+++|+|++.+.+|+.++|++++||++||+||++.||++|.     .+++.|+++   |  +|++||+||.|+++
T Consensus        20 ~~l~vG~~APdFtL~d~~G~~vsLsd~~Gk~vVL~F~ps~~cp~C~~~~~~~El~~~~~~---~--~gv~VvgIS~Ds~~   94 (224)
T 3keb_A           20 DFPRKGDYLPSFMLVDDQKHDAALESFSHTPKLIVTLLSVDEDEHAGLLLLRETRRFLDS---W--PHLKLIVITVDSPS   94 (224)
T ss_dssp             CCCCTTCBCCCCEEEETTSCEEEGGGGTTCCEEEEECSCTTCSTTTSHHHHHHHHHHHTT---C--TTSEEEEEESSCHH
T ss_pred             CcCCCCCCCCCeEEECCCCCEEeHHHhCCCcEEEEEEeCCCCCCCCCCccHHHHHHHHHH---c--CCCEEEEEECCCHH
Confidence            4578999999999999999999999999999999999777799999     999998887   4  58999999999999


Q ss_pred             HHHHHHHHcCC-CeEEEEcC-ChhHHHHhCCCccC---CCCCCccEEEEEcCCCcEEEEEeCC-CCCCccHHHHHHHHhc
Q 028030          141 SHKAFAKKYRL-PYTLLSDE-GNKVRKEWGVPADF---FGSLPGRQTYILDKNGVVQLIYNNQ-FQPEKHIDETLKFLQS  214 (215)
Q Consensus       141 ~~~~~~~~~~~-~~~~~~d~-~~~~~~~~g~~~~~---~g~~p~~~~~lid~~G~v~~~~~g~-~~~~~~~~~il~~l~~  214 (215)
                      .+++|++++++ +|+++.|. ++++.+.||+....   .| ++.|.+||||++|+|++.+... .....+.+++++.|++
T Consensus        95 ~~~~f~~~~gl~~fplLsD~~~~~vak~yGv~~~~~~~~G-~~~p~tfvID~dG~I~~~~~~~~~~~~pd~~evl~~L~~  173 (224)
T 3keb_A           95 SLARARHEHGLPNIALLSTLRGRDFHKRYGVLITEYPLSG-YTSPAIILADAANVVHYSERLANTRDFFDFDAIEKLLQE  173 (224)
T ss_dssp             HHHHHHHHHCCTTCEEEESTTCTTHHHHTTCBCCSTTSTT-CBCCEEEEECTTCBEEEEEECSBTTCCCCHHHHHHHHHH
T ss_pred             HHHHHHHHcCCCCceEEEcCCchHHHHHhCCccccccccC-CccCEEEEEcCCCEEEEEEecCCCCCCCCHHHHHHHHHH
Confidence            99999999999 69999998 69999999998632   23 4456999999999999998753 3344677888887753

>3gl3_A Putative thiol:disulfide interchange protein DSBE; oxidoreductase, PSI-II, structural genomics, protein structure initiative; 2.09A {Chlorobium tepidum tls}

Probab=99.96  E-value=8.7e-28  Score=178.94  Aligned_cols=125  Identities=23%  Similarity=0.373  Sum_probs=118.1

Q ss_pred             cCCCCCCCCCeEEeCCCCCeeecCCcCCCcEEEEEEcCCCChhhHHHHHHHHHHHHHHHHcCcEEEEEeCC-CHHHHHHH
Q 028030           67 KVSKGQAPPSFTLKDQEGRNVSLSKFKGKPVVVYFYPADETPGCTKQACAFRDSYEKFKKAGAEVIGISGD-DSSSHKAF  145 (215)
Q Consensus        67 ~~~~g~~~P~f~l~~~~g~~~~l~~~~gk~~ll~f~~a~~C~~C~~~~~~l~~l~~~~~~~~v~vv~vs~d-~~~~~~~~  145 (215)
                      .+++|+++|+|++.+ +|+.+++++++||++||+|| ++||++|+.+++.|.+++++++++|+++++|+.| +.+.+++|
T Consensus         2 ~l~~G~~~P~f~l~~-~g~~~~l~~~~gk~vll~f~-~~~C~~C~~~~~~l~~l~~~~~~~~~~~v~v~~d~~~~~~~~~   79 (152)
T 3gl3_A            2 SLDKGDKAPDFALPG-KTGVVKLSDKTGSVVYLDFW-ASWCGPCRQSFPWMNQMQAKYKAKGFQVVAVNLDAKTGDAMKF   79 (152)
T ss_dssp             CCCTTSBCCCCEEEB-SSSEEEGGGGTTSEEEEEEE-CTTCTHHHHHHHHHHHHHHHHGGGTEEEEEEECCSSHHHHHHH
T ss_pred             CCCCCCcCCceEeeC-CCCeEeHHHhCCCEEEEEEE-CCcCHHHHHHHHHHHHHHHHhhcCCeEEEEEECCCCHHHHHHH
Confidence            367999999999999 99999999999999999999 9999999999999999999999989999999998 66899999


Q ss_pred             HHHcCCCeEEEEcCChhHHHHhCCCccCCCCCCccEEEEEcCCCcEEEEEeCCCC
Q 028030          146 AKKYRLPYTLLSDEGNKVRKEWGVPADFFGSLPGRQTYILDKNGVVQLIYNNQFQ  200 (215)
Q Consensus       146 ~~~~~~~~~~~~d~~~~~~~~~g~~~~~~g~~p~~~~~lid~~G~v~~~~~g~~~  200 (215)
                      +++++++|+++.|.+.++.+.|++..     +|  +++|||++|+|++.+.|...
T Consensus        80 ~~~~~~~~~~~~d~~~~~~~~~~v~~-----~P--~~~lid~~G~i~~~~~g~~~  127 (152)
T 3gl3_A           80 LAQVPAEFTVAFDPKGQTPRLYGVKG-----MP--TSFLIDRNGKVLLQHVGFRP  127 (152)
T ss_dssp             HHHSCCCSEEEECTTCHHHHHTTCCS-----SS--EEEEECTTSBEEEEEESCCT
T ss_pred             HHHcCCCCceeECCcchhHHHcCCCC-----CC--eEEEECCCCCEEEEEccCCC
Confidence            99999999999999999999999987     88  99999999999999998543

>1xvq_A Thiol peroxidase; thioredoxin fold, structural genomics, PSI, protein structur initiative, TB structural genomics consortium, TBSGC; 1.75A {Mycobacterium tuberculosis} SCOP: c.47.1.10 PDB: 1y25_A

Probab=99.96  E-value=1.3e-28  Score=188.82  Aligned_cols=144  Identities=22%  Similarity=0.320  Sum_probs=121.2

Q ss_pred             ccCCCCCCCCCeEEeCCCCCeeecCCcCCCcEEEEEEcCCC-ChhhHHHHHHHHHHHHHHHHcCcEEEEEeCCCHHHHHH
Q 028030           66 AKVSKGQAPPSFTLKDQEGRNVSLSKFKGKPVVVYFYPADE-TPGCTKQACAFRDSYEKFKKAGAEVIGISGDDSSSHKA  144 (215)
Q Consensus        66 ~~~~~g~~~P~f~l~~~~g~~~~l~~~~gk~~ll~f~~a~~-C~~C~~~~~~l~~l~~~~~~~~v~vv~vs~d~~~~~~~  144 (215)
                      ..+.+|+++|+|++.+.+|+.+++++++||++||+|| ++| |++|+.+++.|++++++   .+++||+|+.|+++.+++
T Consensus        16 ~~l~~G~~~P~f~l~~~~G~~v~l~~~~gk~vvl~F~-~t~~C~~C~~~~~~l~~l~~~---~~v~vv~Is~D~~~~~~~   91 (175)
T 1xvq_A           16 ELPAVGSPAPAFTLTGGDLGVISSDQFRGKSVLLNIF-PSVDTPVCATSVRTFDERAAA---SGATVLCVSKDLPFAQKR   91 (175)
T ss_dssp             CCCCTTSBCCCCEEECTTSCEEEGGGGTTSCEEEEEC-SCCCSSCCCHHHHHHHHHHHH---TTCEEEEEESSCHHHHTT
T ss_pred             CCCCcCCcCCCeEEECCCCCEEeHHHcCCCEEEEEEE-eCCCCchHHHHHHHHHHHHhh---cCCEEEEEECCCHHHHHH
Confidence            4568999999999999999999999999999999999 666 99999999999999988   579999999999999999


Q ss_pred             HHHHcCC-CeEEEEcCChhHHHHhCCCccC---CCCCCccEEEEEcCCCcEEEEEeC-CCCCCccHHHHHHHHhc
Q 028030          145 FAKKYRL-PYTLLSDEGNKVRKEWGVPADF---FGSLPGRQTYILDKNGVVQLIYNN-QFQPEKHIDETLKFLQS  214 (215)
Q Consensus       145 ~~~~~~~-~~~~~~d~~~~~~~~~g~~~~~---~g~~p~~~~~lid~~G~v~~~~~g-~~~~~~~~~~il~~l~~  214 (215)
                      |++++++ +|+++.|.+.++.+.||+....   .| .+.|.+||||++|+|++.+.| .......++++++.+++
T Consensus        92 ~~~~~~~~~~~~l~D~~~~~~~~~gv~~~~~~~~g-~~~p~~~lid~~G~I~~~~~g~~~~~~~~~~~~l~~l~~  165 (175)
T 1xvq_A           92 FCGAEGTENVMPASAFRDSFGEDYGVTIADGPMAG-LLARAIVVIGADGNVAYTELVPEIAQEPNYEAALAALGA  165 (175)
T ss_dssp             CC------CEEEEECTTSSHHHHTTCBBCSSTTTT-SBCSEEEEECTTSBEEEEEECSBTTCCCCHHHHHHHHHH
T ss_pred             HHHHcCCCCceEeeCCHHHHHHHhCCcccccccCC-cccceEEEECCCCeEEEEEECCCcCCCCCHHHHHHHHHh
Confidence            9999999 8999999999999999997521   12 233499999999999999975 44456678888888764

>3eyt_A Uncharacterized protein SPOA0173; thioredoxin-like superfamily protein SPOA0173, silicibacter DSS, structural genomics, PSI-2; 1.95A {Silicibacter pomeroyi}

Probab=99.96  E-value=6e-29  Score=186.55  Aligned_cols=136  Identities=18%  Similarity=0.311  Sum_probs=119.6

Q ss_pred             CCCCCCCeEEeCC--CCCeeecCCcCCCcEEEEEEcCCCChhhHHH-HHHHHHHHHHHHHcCcEEEEEeC-------CCH
Q 028030           70 KGQAPPSFTLKDQ--EGRNVSLSKFKGKPVVVYFYPADETPGCTKQ-ACAFRDSYEKFKKAGAEVIGISG-------DDS  139 (215)
Q Consensus        70 ~g~~~P~f~l~~~--~g~~~~l~~~~gk~~ll~f~~a~~C~~C~~~-~~~l~~l~~~~~~~~v~vv~vs~-------d~~  139 (215)
                      .|+++|+|++.+.  +|+.+++++++||++||+|| ++||++|+.+ ++.|++++++|+++++.||+|+.       ++.
T Consensus         2 ~g~~aP~f~l~~~~~~g~~~~l~~~~gk~vlv~f~-a~wC~~C~~~~~~~l~~l~~~~~~~~v~~v~v~~~~~~~~~~~~   80 (158)
T 3eyt_A            2 NAMKAPELQIQQWFNSATDLTLADLRGKVIVIEAF-QMLCPGCVMHGIPLAQKVRAAFPEDKVAVLGLHTVFEHHEAMTP   80 (158)
T ss_dssp             CCEECCCCCEEEEESCSSCCCTGGGTTSEEEEEEE-CTTCHHHHHTHHHHHHHHHHHSCTTTEEEEEEECCCSCGGGSCH
T ss_pred             CCCcCCCceehhhhcCCCccCHHHhCCCEEEEEEE-CCcCcchhhhhhHHHHHHHHHhCcCCEEEEEEEecccccccCCH
Confidence            6889999999994  88999999999999999999 9999999996 99999999999988999999996       478


Q ss_pred             HHHHHHHHHcCCCeEEEEcCCh-----hHHHHhCCCccCCCCCCccEEEEEcCCCcEEEEEeCCCCCCccHHHHHHHHh
Q 028030          140 SSHKAFAKKYRLPYTLLSDEGN-----KVRKEWGVPADFFGSLPGRQTYILDKNGVVQLIYNNQFQPEKHIDETLKFLQ  213 (215)
Q Consensus       140 ~~~~~~~~~~~~~~~~~~d~~~-----~~~~~~g~~~~~~g~~p~~~~~lid~~G~v~~~~~g~~~~~~~~~~il~~l~  213 (215)
                      +.+++|+++++++|+++.|.++     .+.+.||+..     +|  ++||||++|+|++.+.|..+.+...+.+.++|+
T Consensus        81 ~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~v~~-----~P--~~~lid~~G~i~~~~~g~~~~~~l~~~i~~ll~  152 (158)
T 3eyt_A           81 ISLKAFLHEYRIKFPVGVDQPGDGAMPRTMAAYQMRG-----TP--SLLLIDKAGDLRAHHFGDVSELLLGAEIATLLG  152 (158)
T ss_dssp             HHHHHHHHHTTCCSCEEEECCCSSSSCHHHHHTTCCS-----SS--EEEEECTTSEEEEEEESCCCHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHcCCCceEEEcCccchhhHHHHHHcCCCC-----CC--EEEEECCCCCEEEEEeCCCCHHHHHHHHHHHhc
Confidence            9999999999999999999887     6999999987     88  999999999999999987554433333334443

>3hcz_A Possible thiol-disulfide isomerase; APC61559.2, cytophaga hutchinsoni structural genomics, PSI-2, protein structure initiative; 1.88A {Cytophaga hutchinsonii}

Probab=99.96  E-value=4.8e-29  Score=184.51  Aligned_cols=140  Identities=19%  Similarity=0.299  Sum_probs=124.5

Q ss_pred             ccCCCCCCCCCeEEeCCCCCeeecCCcCCCcEEEEEEcCCCChhhHHHHHHHHHHHHHHHHcCcEEEEEeCC-CHHHHHH
Q 028030           66 AKVSKGQAPPSFTLKDQEGRNVSLSKFKGKPVVVYFYPADETPGCTKQACAFRDSYEKFKKAGAEVIGISGD-DSSSHKA  144 (215)
Q Consensus        66 ~~~~~g~~~P~f~l~~~~g~~~~l~~~~gk~~ll~f~~a~~C~~C~~~~~~l~~l~~~~~~~~v~vv~vs~d-~~~~~~~  144 (215)
                      ..+.+|+++|+|++.+.+|+.+++++++||++||+|| ++||++|+.+++.|.+++++++++|+.|++|+.| +.+.+++
T Consensus         3 ~~~~~G~~~p~~~l~~~~g~~~~l~~~~gk~vll~f~-~~~C~~C~~~~~~l~~l~~~~~~~~~~~v~v~~d~~~~~~~~   81 (148)
T 3hcz_A            3 APLLLGKKAPNLYMTDTTGTYRYLYDVQAKYTILFFW-DSQCGHCQQETPKLYDWWLKNRAKGIQVYAANIERKDEEWLK   81 (148)
T ss_dssp             CCCCTTSBCCCCCCBCTTSCBCCGGGCCCSEEEEEEE-CGGGCTTCSHHHHHHHHHHHHGGGTEEEEEEECCSSSHHHHH
T ss_pred             CccCCCCcCCceEEecCCCCEEEhHHcCCCEEEEEEE-CCCCccHHHHHHHHHHHHHHhccCCEEEEEEEecCCHHHHHH
Confidence            4578999999999999999999999999999999999 9999999999999999999999889999999998 5689999


Q ss_pred             HHHHcCCC-eEEEEcCChh--HHHHhCCCccCCCCCCccEEEEEcCCCcEEEEEeCCCCCCccHHHHHHHHh
Q 028030          145 FAKKYRLP-YTLLSDEGNK--VRKEWGVPADFFGSLPGRQTYILDKNGVVQLIYNNQFQPEKHIDETLKFLQ  213 (215)
Q Consensus       145 ~~~~~~~~-~~~~~d~~~~--~~~~~g~~~~~~g~~p~~~~~lid~~G~v~~~~~g~~~~~~~~~~il~~l~  213 (215)
                      |+++++++ |+++.|.++.  +.+.|++..     +|  ++++||++|+|+..+.|....+..++++.+.++
T Consensus        82 ~~~~~~~~~~~~~~d~~~~~~~~~~~~i~~-----~P--~~~lid~~G~i~~~~~g~~~~~~~l~~l~~~l~  146 (148)
T 3hcz_A           82 FIRSKKIGGWLNVRDSKNHTDFKITYDIYA-----TP--VLYVLDKNKVIIAKRIGYENLDDFLVQYEKSLK  146 (148)
T ss_dssp             HHHHHTCTTSEEEECTTCCCCHHHHHCCCS-----SC--EEEEECTTCBEEEESCCGGGHHHHHHHHHHHHH
T ss_pred             HHHHcCCCCceEEeccccchhHHHhcCcCC-----CC--EEEEECCCCcEEEecCCHHHHHHHHHHHHHHhc
Confidence            99999999 9999999888  999999987     88  999999999999998875333344444444443

>2jsy_A Probable thiol peroxidase; solution structure, antioxidant, oxidoreductase; NMR {Bacillus subtilis} PDB: 2jsz_A

Probab=99.96  E-value=7.8e-29  Score=188.10  Aligned_cols=144  Identities=22%  Similarity=0.292  Sum_probs=123.9

Q ss_pred             ccCCCCCCCCCeEEeCCCCCeeecCCcCCCcEEEEEEcCCC-ChhhHHHHHHHHHHHHHHHHcCcEEEEEeCCCHHHHHH
Q 028030           66 AKVSKGQAPPSFTLKDQEGRNVSLSKFKGKPVVVYFYPADE-TPGCTKQACAFRDSYEKFKKAGAEVIGISGDDSSSHKA  144 (215)
Q Consensus        66 ~~~~~g~~~P~f~l~~~~g~~~~l~~~~gk~~ll~f~~a~~-C~~C~~~~~~l~~l~~~~~~~~v~vv~vs~d~~~~~~~  144 (215)
                      ..+++|+++|+|++.+.+|+.+++++++||++||+|| ++| |++|+.+++.|++++++|  .++++|+|+.|+++.+++
T Consensus        16 ~~~~~G~~~p~f~l~~~~G~~~~l~~~~gk~~vl~F~-~~~~C~~C~~~~~~l~~l~~~~--~~~~vv~is~d~~~~~~~   92 (167)
T 2jsy_A           16 QEVKVGDQAPDFTVLTNSLEEKSLADMKGKVTIISVI-PSIDTGVCDAQTRRFNEEAAKL--GDVNVYTISADLPFAQAR   92 (167)
T ss_dssp             CCCCTTSCCCCCEEEBTTCCEEEHHHHTTSCEEEEEC-SCSTTSHHHHTHHHHHHHHHHH--SSCEEEEEECSSGGGTSC
T ss_pred             CccCCCCcCCceEEECCCCCEeeHHHhCCCeEEEEEe-cCCCCCchHHHHHHHHHHHHHc--CCCEEEEEECCCHHHHHH
Confidence            3578999999999999999999999999999999999 777 999999999999999999  689999999999999999


Q ss_pred             HHHHcCC-CeEEEEc-CChhHHHHhCCCccCCCCCCccEEEEEcCCCcEEEEEeCCC-CCCccHHHHHHHHh
Q 028030          145 FAKKYRL-PYTLLSD-EGNKVRKEWGVPADFFGSLPGRQTYILDKNGVVQLIYNNQF-QPEKHIDETLKFLQ  213 (215)
Q Consensus       145 ~~~~~~~-~~~~~~d-~~~~~~~~~g~~~~~~g~~p~~~~~lid~~G~v~~~~~g~~-~~~~~~~~il~~l~  213 (215)
                      |++++++ +|+++.| .++++.+.||+.....| ++.|++||||++|+|++.+.|.. ......+++++.|+
T Consensus        93 ~~~~~~~~~~~~~~d~~~~~~~~~~~v~~~~~g-~~~p~~~lid~~G~i~~~~~g~~~~~~~~~~~l~~~l~  163 (167)
T 2jsy_A           93 WCGANGIDKVETLSDHRDMSFGEAFGVYIKELR-LLARSVFVLDENGKVVYAEYVSEATNHPNYEKPIEAAK  163 (167)
T ss_dssp             CGGGSSCTTEEEEEGGGTCHHHHHTTCBBTTTC-SBCCEEEEECTTSCEEEEEECSBTTSCCCSHHHHHHHH
T ss_pred             HHHhcCCCCceEeeCCchhHHHHHhCCccccCC-ceeeEEEEEcCCCcEEEEEecCCcCCCCCHHHHHHHHH
Confidence            9999999 8999999 88999999999863333 22349999999999999997642 23344566666554

>3lor_A Thiol-disulfide isomerase and thioredoxins; PSI, MCSG, structural genomics, midwest CE structural genomics; HET: MSE; 2.20A {Corynebacterium glutamicum}

Probab=99.96  E-value=9e-29  Score=185.84  Aligned_cols=136  Identities=15%  Similarity=0.247  Sum_probs=121.4

Q ss_pred             CCCCCCCeEEeC-CCCCeeecCCcCCCcEEEEEEcCCCChhhHHH-HHHHHHHHHHHHHcCcEEEEEeC-------CCHH
Q 028030           70 KGQAPPSFTLKD-QEGRNVSLSKFKGKPVVVYFYPADETPGCTKQ-ACAFRDSYEKFKKAGAEVIGISG-------DDSS  140 (215)
Q Consensus        70 ~g~~~P~f~l~~-~~g~~~~l~~~~gk~~ll~f~~a~~C~~C~~~-~~~l~~l~~~~~~~~v~vv~vs~-------d~~~  140 (215)
                      .|.++|+|++.+ .+|+.+++++++||++||+|| ++||++|..+ ++.|++++++|+++|++||+|+.       |+.+
T Consensus         5 ~g~~~p~~~~~~~~~g~~~~l~~~~gk~vlv~F~-a~~C~~C~~e~~~~l~~l~~~~~~~~v~~v~v~~~~~~~~~~~~~   83 (160)
T 3lor_A            5 DNAPLLELDVQEWVNHEGLSNEDLRGKVVVVEVF-QMLCPGCVNHGVPQAQKIHRMIDESQVQVIGLHSVFEHHDVMTPE   83 (160)
T ss_dssp             TTCCBCCCCEEEESSSCCCCHHHHTTSEEEEEEE-CTTCHHHHHTHHHHHHHHHHHSCTTTEEEEEEECCCSCGGGSCHH
T ss_pred             CCCcCCCcccccccCCCccCHHHhCCCEEEEEEE-cCCCcchhhhhhHHHHHHHHHhCcCCcEEEEEeccccccccCCHH
Confidence            588999999999 899999999999999999999 9999999995 99999999999988999999997       6889


Q ss_pred             HHHHHHHHcCCCeEEEEcCChh------HHHHhCCCccCCCCCCccEEEEEcCCCcEEEEEeCCCCCCccHHHHHHHHh
Q 028030          141 SHKAFAKKYRLPYTLLSDEGNK------VRKEWGVPADFFGSLPGRQTYILDKNGVVQLIYNNQFQPEKHIDETLKFLQ  213 (215)
Q Consensus       141 ~~~~~~~~~~~~~~~~~d~~~~------~~~~~g~~~~~~g~~p~~~~~lid~~G~v~~~~~g~~~~~~~~~~il~~l~  213 (215)
                      .+++|+++++++|+++.|....      +.+.||+..     +|  ++||||++|+|++.+.|..+.+...+.+.++|+
T Consensus        84 ~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~v~~-----~P--~~~lid~~G~i~~~~~g~~~~~~l~~~i~~ll~  155 (160)
T 3lor_A           84 ALKVFIDEFGIKFPVAVDMPREGQRIPSTMKKYRLEG-----TP--SIILADRKGRIRQVQFGQVDDFVLGLLLGSLLS  155 (160)
T ss_dssp             HHHHHHHHTTCCSCEEEECCCTTCSSCHHHHHTTCCS-----SS--EEEEECTTSBEEEEEESCCCHHHHHHHHHHHHT
T ss_pred             HHHHHHHHcCCCCcEEECCccccchhhhHHHhcccCc-----cc--eEEEECCCCcEEEEecCcCCHHHHHHHHHHHHh
Confidence            9999999999999999999888      999999987     88  999999999999999997654443344444443

>4fo5_A Thioredoxin-like protein; AHPC/TSA family protein, structural genomics, joint center F structural genomics, JCSG; 2.02A {Parabacteroides distasonis}

Probab=99.96  E-value=4.5e-29  Score=184.68  Aligned_cols=123  Identities=15%  Similarity=0.224  Sum_probs=108.9

Q ss_pred             ccCCCCCCCCCeEEeCCCCCeeecCCcCCCcEEEEEEcCCCChhhHHHHHHHHHHHHHHHHcCcEEEEEeCC-CHHHHHH
Q 028030           66 AKVSKGQAPPSFTLKDQEGRNVSLSKFKGKPVVVYFYPADETPGCTKQACAFRDSYEKFKKAGAEVIGISGD-DSSSHKA  144 (215)
Q Consensus        66 ~~~~~g~~~P~f~l~~~~g~~~~l~~~~gk~~ll~f~~a~~C~~C~~~~~~l~~l~~~~~~~~v~vv~vs~d-~~~~~~~  144 (215)
                      ..+++|+++|+|++ +.+|+.+++++++||++||+|| ++||++|+.+++.|++++++|++++++||+|+.| +.+.+++
T Consensus         5 ~~l~~G~~~P~f~l-~~~g~~~~l~~~~gk~vll~F~-a~wC~~C~~~~~~l~~l~~~~~~~~~~vv~vs~d~~~~~~~~   82 (143)
T 4fo5_A            5 EGVNPGDLAPRIEF-LGNDAKASFHNQLGRYTLLNFW-AAYDAESRARNVQLANEVNKFGPDKIAMCSISMDEKESIFTE   82 (143)
T ss_dssp             BSSSTTSBCCCCCC------CCCSCCSSCCEEEEEEE-CTTCHHHHHHHHHHHHHHTTSCTTTEEEEEEECCSCHHHHHH
T ss_pred             cccCCcccCCceEE-cCCCCEEEHHHhCCCEEEEEEE-cCcCHHHHHHHHHHHHHHHHhCcCCEEEEEEEccCCHHHHHH
Confidence            56789999999999 9999999999999999999999 9999999999999999999999889999999998 5689999


Q ss_pred             HHHHcCCCe-EEEEcCC---hhHHHHhCCCccCCCCCCccEEEEEcCCCcEEEEEeC
Q 028030          145 FAKKYRLPY-TLLSDEG---NKVRKEWGVPADFFGSLPGRQTYILDKNGVVQLIYNN  197 (215)
Q Consensus       145 ~~~~~~~~~-~~~~d~~---~~~~~~~g~~~~~~g~~p~~~~~lid~~G~v~~~~~g  197 (215)
                      ++++++++| +++.|..   .++.+.||+..     +|  ++||||++|+|+++..+
T Consensus        83 ~~~~~~~~~~~~~~d~~~~~~~~~~~~~v~~-----~P--~~~lid~~G~i~~~~~~  132 (143)
T 4fo5_A           83 TVKIDKLDLSTQFHEGLGKESELYKKYDLRK-----GF--KNFLINDEGVIIAANVT  132 (143)
T ss_dssp             HHHHHTCCGGGEEECTTGGGSHHHHHTTGGG-----CC--CEEEECTTSBEEEESCC
T ss_pred             HHHHhCCCCceeeecccccchHHHHHcCCCC-----CC--cEEEECCCCEEEEccCC
Confidence            999999999 7888874   57899999987     88  99999999999988654

>2lrn_A Thiol:disulfide interchange protein; structural genomics, thioredoxin-like, NEW YORK structural G research consortium, oxidoreductase; NMR {Bacteroides SP}

Probab=99.96  E-value=1.8e-28  Score=183.16  Aligned_cols=122  Identities=24%  Similarity=0.377  Sum_probs=114.8

Q ss_pred             CCCCCCCCCeEEeCCCCCeeecCCcCCCcEEEEEEcCCCChhhHHHHHHHHHHHHHHHHcCcEEEEEeCC-CHHHHHHHH
Q 028030           68 VSKGQAPPSFTLKDQEGRNVSLSKFKGKPVVVYFYPADETPGCTKQACAFRDSYEKFKKAGAEVIGISGD-DSSSHKAFA  146 (215)
Q Consensus        68 ~~~g~~~P~f~l~~~~g~~~~l~~~~gk~~ll~f~~a~~C~~C~~~~~~l~~l~~~~~~~~v~vv~vs~d-~~~~~~~~~  146 (215)
                      +++|+++|+|++.+.+|+.+++++++||++||+|| ++||++|+.+++.|++++++|++++++|++|+.| +.+.+++|+
T Consensus         3 l~~g~~~p~f~l~~~~G~~~~l~~~~gk~vll~F~-a~~C~~C~~~~~~l~~l~~~~~~~~~~vv~v~~d~~~~~~~~~~   81 (152)
T 2lrn_A            3 LATGSVAPAITGIDLKGNSVSLNDFKGKYVLVDFW-FAGCSWCRKETPYLLKTYNAFKDKGFTIYGVSTDRREEDWKKAI   81 (152)
T ss_dssp             SCTTEECCCCEEECSSSCEEESGGGTTSEEEEEEE-CTTCTTHHHHHHHHHHHHHHHTTTTEEEEEEECCSCHHHHHHHH
T ss_pred             ccCCCcCCCceeEcCCCCEEeHHHcCCCEEEEEEE-CCCChhHHHHHHHHHHHHHHhccCCeEEEEEEccCCHHHHHHHH
Confidence            67899999999999999999999999999999999 9999999999999999999999889999999998 468899999


Q ss_pred             HHcCCCeEEEEcC---ChhHHHHhCCCccCCCCCCccEEEEEcCCCcEEEEEeC
Q 028030          147 KKYRLPYTLLSDE---GNKVRKEWGVPADFFGSLPGRQTYILDKNGVVQLIYNN  197 (215)
Q Consensus       147 ~~~~~~~~~~~d~---~~~~~~~~g~~~~~~g~~p~~~~~lid~~G~v~~~~~g  197 (215)
                      ++++++|+++.|.   +.++.+.||+..     +|  +++|||++|+|++.+.+
T Consensus        82 ~~~~~~~~~~~d~~~~~~~~~~~~~v~~-----~P--~~~lid~~G~i~~~~~~  128 (152)
T 2lrn_A           82 EEDKSYWNQVLLQKDDVKDVLESYCIVG-----FP--HIILVDPEGKIVAKELR  128 (152)
T ss_dssp             HHHTCCSEEEEECHHHHHHHHHHTTCCS-----SC--EEEEECTTSEEEEECCC
T ss_pred             HHhCCCCeEEecccchhHHHHHHhCCCc-----CC--eEEEECCCCeEEEeeCC
Confidence            9999999999998   789999999987     88  99999999999998743

>3lwa_A Secreted thiol-disulfide isomerase; thioredoxin, PSI, MCSG, structural genomics, midwest center for structural genomics; 1.75A {Corynebacterium glutamicum}

Probab=99.96  E-value=6.9e-28  Score=185.47  Aligned_cols=142  Identities=20%  Similarity=0.308  Sum_probs=121.7

Q ss_pred             cCCCCCCCCCeEEeCC--CCCeeecCCcCCCcEEEEEEcCCCChhhHHHHHHHHHHHHHHHHcCc------EEEEEeCCC
Q 028030           67 KVSKGQAPPSFTLKDQ--EGRNVSLSKFKGKPVVVYFYPADETPGCTKQACAFRDSYEKFKKAGA------EVIGISGDD  138 (215)
Q Consensus        67 ~~~~g~~~P~f~l~~~--~g~~~~l~~~~gk~~ll~f~~a~~C~~C~~~~~~l~~l~~~~~~~~v------~vv~vs~d~  138 (215)
                      ..+.|.++|+|++++.  +|+.+++++++||++||+|| ++||++|+.+++.|++++++|+++|+      +|++|+.|+
T Consensus        30 ~~~~g~~~p~f~l~~~~~~g~~~~l~~~~gk~vlv~F~-a~~C~~C~~~~~~l~~l~~~~~~~~~~~~~~v~~v~v~~d~  108 (183)
T 3lwa_A           30 DEADRQQLPDIGGDSLMEEGTQINLSDFENQVVILNAW-GQWCAPCRSESDDLQIIHEELQAAGNGDTPGGTVLGINVRD  108 (183)
T ss_dssp             CGGGCCCCCCCEEEBSSSTTCEEEGGGGTTSEEEEEEE-CTTCHHHHHHHHHHHHHHHHHHHCC---CCSEEEEEEECSC
T ss_pred             ccccCCCCCceeccccccCCcEecHHHhCCCEEEEEEE-CCcCHhHHHHHHHHHHHHHHHHhcCCCccCCcEEEEEECCC
Confidence            4678999999999999  99999999999999999999 99999999999999999999999889      999999987


Q ss_pred             --HHHHHHHHHHcCCCeEEEEcCChhHHHHhCCCccCCCCCCccEEEEEcCCCcEEEEEeCCCCCCccHHHHHHHHh
Q 028030          139 --SSSHKAFAKKYRLPYTLLSDEGNKVRKEWGVPADFFGSLPGRQTYILDKNGVVQLIYNNQFQPEKHIDETLKFLQ  213 (215)
Q Consensus       139 --~~~~~~~~~~~~~~~~~~~d~~~~~~~~~g~~~~~~g~~p~~~~~lid~~G~v~~~~~g~~~~~~~~~~il~~l~  213 (215)
                        ++.+++|+++++++|+++.|..+.+.+.|+...  ...+|  ++||||++|+|++.+.|....+...+.+.++++
T Consensus       109 ~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~--v~~~P--~~~lid~~G~i~~~~~g~~~~~~l~~~l~~ll~  181 (183)
T 3lwa_A          109 YSRDIAQDFVTDNGLDYPSIYDPPFMTAASLGGVP--ASVIP--TTIVLDKQHRPAAVFLREVTSKDVLDVALPLVD  181 (183)
T ss_dssp             CCHHHHHHHHHHTTCCSCEEECTTCGGGGGTTTCC--TTCCS--EEEEECTTSCEEEEECSCCCHHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHcCCCccEEECCcchHHHHhccCC--CCCCC--eEEEECCCCcEEEEEcCCCCHHHHHHHHHHHHh
Confidence              899999999999999999999999999986321  01277  999999999999999986544443333334343

>1nm3_A Protein HI0572; hybrid, peroxiredoxin, glutaredoxin, electron transport; 2.80A {Haemophilus influenzae} SCOP: c.47.1.1 c.47.1.10

Probab=99.96  E-value=3e-28  Score=195.84  Aligned_cols=145  Identities=23%  Similarity=0.443  Sum_probs=128.1

Q ss_pred             cCCCCCCCCCeEEeCC-CCC--eeecCC-cCCCcEEEEEEcCCCChhhH-HHHHHHHHHHHHHHHcCc-EEEEEeCCCHH
Q 028030           67 KVSKGQAPPSFTLKDQ-EGR--NVSLSK-FKGKPVVVYFYPADETPGCT-KQACAFRDSYEKFKKAGA-EVIGISGDDSS  140 (215)
Q Consensus        67 ~~~~g~~~P~f~l~~~-~g~--~~~l~~-~~gk~~ll~f~~a~~C~~C~-~~~~~l~~l~~~~~~~~v-~vv~vs~d~~~  140 (215)
                      .+++|+++|+|++++. +|+  .++|++ ++||++||+||+++||++|. .+++.|++++++|+++|+ +|++|+.|+++
T Consensus         2 ~~~~G~~aP~f~l~~~~~g~~~~v~l~~~~~gk~vvl~f~~a~~cp~C~~~e~~~l~~~~~~~~~~~~~~vv~is~d~~~   81 (241)
T 1nm3_A            2 SSMEGKKVPQVTFRTRQGDKWVDVTTSELFDNKTVIVFSLPGAFTPTCSSSHLPRYNELAPVFKKYGVDDILVVSVNDTF   81 (241)
T ss_dssp             -CCTTSBCCCCEEEEEETTEEEEEEHHHHHTTSEEEEEEESCSSCHHHHHTHHHHHHHHHHHHHHTTCCEEEEEESSCHH
T ss_pred             CccCCCCCCCeEEEcccCCCceeecHHHHhCCCeEEEEEeCCCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEEEcCCHH
Confidence            3678999999999996 787  899999 89999999999999999999 999999999999999999 99999999999


Q ss_pred             HHHHHHHHcCCC-eEEEEcCChhHHHHhCCCccC--CC----CCCccEEEEEcCCCcEEEEEeCCCCCC-----ccHHHH
Q 028030          141 SHKAFAKKYRLP-YTLLSDEGNKVRKEWGVPADF--FG----SLPGRQTYILDKNGVVQLIYNNQFQPE-----KHIDET  208 (215)
Q Consensus       141 ~~~~~~~~~~~~-~~~~~d~~~~~~~~~g~~~~~--~g----~~p~~~~~lid~~G~v~~~~~g~~~~~-----~~~~~i  208 (215)
                      .+++|+++++++ |+++.|.++++.++||+....  .|    ..|  ++||| ++|+|++.+.+.....     ...+++
T Consensus        82 ~~~~~~~~~~~~~~~~l~D~~~~~~~~~gv~~~~~~~g~~~~~~p--~t~li-~~G~i~~~~~~~~~~~~~~~~~~~~~i  158 (241)
T 1nm3_A           82 VMNAWKEDEKSENISFIPDGNGEFTEGMGMLVGKEDLGFGKRSWR--YSMLV-KNGVVEKMFIEPNEPGDPFKVSDADTM  158 (241)
T ss_dssp             HHHHHHHHTTCTTSEEEECTTSHHHHHTTCEEECTTTTCCEEECC--EEEEE-ETTEEEEEEECCSCSSCCCSSSSHHHH
T ss_pred             HHHHHHHhcCCCceEEEECCCcHHHHHhCceeecccccCccccee--EEEEE-ECCEEEEEEEeccCCCccceecCHHHH
Confidence            999999999997 999999999999999997421  12    135  99999 9999999998864433     578999


Q ss_pred             HHHHhc
Q 028030          209 LKFLQS  214 (215)
Q Consensus       209 l~~l~~  214 (215)
                      ++.|+.
T Consensus       159 l~~l~~  164 (241)
T 1nm3_A          159 LKYLAP  164 (241)
T ss_dssp             HHHHCT
T ss_pred             HHHhhh
Confidence            988864

>2v1m_A Glutathione peroxidase; selenium, selenocysteine, oxidoreductase, lipid peroxidase, schistosoma detoxification pathway; 1.00A {Schistosoma mansoni} PDB: 2wgr_A

Probab=99.96  E-value=6.5e-28  Score=182.68  Aligned_cols=145  Identities=17%  Similarity=0.273  Sum_probs=117.7

Q ss_pred             cCCCCCCCCCeEEeCCCCCeeecCCcCCCcEEEEEEcCCCChhhHHHHHHHHHHHHHHHHcCcEEEEEeCC--------C
Q 028030           67 KVSKGQAPPSFTLKDQEGRNVSLSKFKGKPVVVYFYPADETPGCTKQACAFRDSYEKFKKAGAEVIGISGD--------D  138 (215)
Q Consensus        67 ~~~~g~~~P~f~l~~~~g~~~~l~~~~gk~~ll~f~~a~~C~~C~~~~~~l~~l~~~~~~~~v~vv~vs~d--------~  138 (215)
                      .+++|+++|+|++++.+|+++++++++||++||+|| ++||++|+.+++.|++++++|+++|++||+|+.|        +
T Consensus         4 ~~~~g~~~p~f~l~~~~G~~~~l~~~~gk~vlv~f~-a~~C~~C~~~~~~l~~l~~~~~~~~~~vv~v~~d~~~~~~~~~   82 (169)
T 2v1m_A            4 SHKSWNSIYEFTVKDINGVDVSLEKYRGHVCLIVNV-ACKCGATDKNYRQLQEMHTRLVGKGLRILAFPCNQFGGQEPWA   82 (169)
T ss_dssp             ---CCCSGGGCEEEBTTSCEEEGGGGTTSEEEEEEE-CSSSTTHHHHHHHHHHHHHHHGGGTEEEEEEECCCSTTCCCSC
T ss_pred             cccCCcccccceeecCCCCCccHHHcCCCEEEEEEe-eccCCchHHHHHHHHHHHHHhhcCCeEEEEEECCccCCCCCCC
Confidence            457899999999999999999999999999999999 9999999999999999999999989999999985        4


Q ss_pred             HHHHHHH-HHHcCCCeEEEE--cCChhHHH-Hh--------CCCccCCCCCCccEEEEEcCCCcEEEEEeCCCCCCccHH
Q 028030          139 SSSHKAF-AKKYRLPYTLLS--DEGNKVRK-EW--------GVPADFFGSLPGRQTYILDKNGVVQLIYNNQFQPEKHID  206 (215)
Q Consensus       139 ~~~~~~~-~~~~~~~~~~~~--d~~~~~~~-~~--------g~~~~~~g~~p~~~~~lid~~G~v~~~~~g~~~~~~~~~  206 (215)
                      .+.+++| .++++++|+++.  |.++.... .|        |+.......+|  ++||||++|+|++.+.|..+.+...+
T Consensus        83 ~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~~~~~~~~~~i~~~P--~~~lid~~G~i~~~~~g~~~~~~l~~  160 (169)
T 2v1m_A           83 EAEIKKFVTEKYGVQFDMFSKIKVNGSDADDLYKFLKSRQHGTLTNNIKWNF--SKFLVDRQGQPVKRYSPTTAPYDIEG  160 (169)
T ss_dssp             HHHHHHHHHHHHCCCSEEBCCCCCSSTTSCHHHHHHHHHSCCSSSCSCCSTT--CEEEECTTSCEEEEECTTSCGGGGHH
T ss_pred             HHHHHHHHHHhcCCCCceEEEEeecCccccHHHHHHHhhcCCccCCcccccc--eEEEECCCCCEEEEcCCCCCHHHHHH
Confidence            6889999 599999999985  66655432 22        54321111256  99999999999999998766666666


Q ss_pred             HHHHHHhc
Q 028030          207 ETLKFLQS  214 (215)
Q Consensus       207 ~il~~l~~  214 (215)
                      .+.++|++
T Consensus       161 ~i~~ll~~  168 (169)
T 2v1m_A          161 DIMELLEK  168 (169)
T ss_dssp             HHHHHHHC
T ss_pred             HHHHHhcc
Confidence            66666653

>3u5r_E Uncharacterized protein; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, hypothetical protein; 2.05A {Sinorhizobium meliloti}

Probab=99.96  E-value=3.4e-28  Score=192.87  Aligned_cols=123  Identities=21%  Similarity=0.360  Sum_probs=116.3

Q ss_pred             ccCCCCCCCCCeEEeCCCCCeeecCCcCCCc-EEEEEEcCCCChhhHHHHHHHHHHHHHHHHcCcEEEEEeC--------
Q 028030           66 AKVSKGQAPPSFTLKDQEGRNVSLSKFKGKP-VVVYFYPADETPGCTKQACAFRDSYEKFKKAGAEVIGISG--------  136 (215)
Q Consensus        66 ~~~~~g~~~P~f~l~~~~g~~~~l~~~~gk~-~ll~f~~a~~C~~C~~~~~~l~~l~~~~~~~~v~vv~vs~--------  136 (215)
                      ..+++|+++|+|++++.+|+.+++++++||+ +||+|| ++||++|+.+++.|++++++|+++|++||+|+.        
T Consensus        30 ~~l~~G~~aP~f~l~~~~G~~v~l~~~~gk~~vll~F~-a~~C~~C~~~~~~l~~l~~~~~~~~v~vv~Vs~d~~~~~~~  108 (218)
T 3u5r_E           30 NSITLGTRAADFVLPDAGGNLFTLAEFKDSPALLVAFI-SNRCPFVVLIREALAKFAGDYAGQGLAVVAINSNDAQAFPE  108 (218)
T ss_dssp             CCCCTTCBCCCCCEECTTCCEECGGGGTTCSEEEEEEC-CSSCHHHHTTHHHHHHHHHHHTTTTEEEEEEECSCTTTCGG
T ss_pred             CcCCCCCcCCCcEeECCCCCEEeHHHhCCCCeEEEEEE-CCCCccHHHHHHHHHHHHHHHHhCCcEEEEEECCccccccc
Confidence            4678999999999999999999999999996 999999 999999999999999999999998999999999        


Q ss_pred             CCHHHHHHHHHHcCCCeEEEEcCChhHHHHhCCCccCCCCCCccEEEEEcCCCcEEEEEe
Q 028030          137 DDSSSHKAFAKKYRLPYTLLSDEGNKVRKEWGVPADFFGSLPGRQTYILDKNGVVQLIYN  196 (215)
Q Consensus       137 d~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~g~~~~~~g~~p~~~~~lid~~G~v~~~~~  196 (215)
                      |+++.+++|+++++++|+++.|.++++.+.|++..     +|  ++||||++|+|++...
T Consensus       109 d~~~~~~~~~~~~~~~~~~l~D~~~~~~~~~~v~~-----~P--~~~liD~~G~i~~~g~  161 (218)
T 3u5r_E          109 ETLERVGAEVKAYGYGFPYLKDASQSVAKAYGAAC-----TP--DFFLYDRERRLVYHGQ  161 (218)
T ss_dssp             GSHHHHHHHHHHHTCCSCEEECTTCHHHHHHTCCE-----ES--EEEEECTTCBEEEEEC
T ss_pred             CCHHHHHHHHHHhCCCccEEECCccHHHHHcCCCC-----CC--eEEEECCCCcEEEecc
Confidence            67899999999999999999999999999999987     88  9999999999997753

>1xcc_A 1-Cys peroxiredoxin; unknown function, structural genomics, structural genomics consortium, SGC; 2.30A {Plasmodium yoelii} SCOP: c.47.1.10 PDB: 3tb2_A

Probab=99.96  E-value=1.7e-28  Score=195.02  Aligned_cols=146  Identities=21%  Similarity=0.353  Sum_probs=124.7

Q ss_pred             CCCCCCCCCeEEeCC--CCCeeecCCcCCC-cEEEEEEcCCCChhhHHHHHHHHHHHHHHHHcCcEEEEEeCCCHHHHHH
Q 028030           68 VSKGQAPPSFTLKDQ--EGRNVSLSKFKGK-PVVVYFYPADETPGCTKQACAFRDSYEKFKKAGAEVIGISGDDSSSHKA  144 (215)
Q Consensus        68 ~~~g~~~P~f~l~~~--~g~~~~l~~~~gk-~~ll~f~~a~~C~~C~~~~~~l~~l~~~~~~~~v~vv~vs~d~~~~~~~  144 (215)
                      +.+|+++|+|++.+.  +| .+++++++|| ++||+||+++||++|..+++.|++++++|+++|++||+||.|+.+.+++
T Consensus         3 l~iG~~aP~F~l~~~~~~G-~v~l~d~~Gk~~vvL~f~~a~~cp~C~~el~~l~~l~~~f~~~~v~vi~vS~D~~~~~~~   81 (220)
T 1xcc_A            3 YHLGATFPNFTAKASGIDG-DFELYKYIENSWAILFSHPNDFTPVCTTELAELGKMHEDFLKLNCKLIGFSCNSKESHDK   81 (220)
T ss_dssp             CCTTCBCCCCEECBTTCSS-CEEHHHHTTTSEEEEECCSCTTCHHHHHHHHHHHHTHHHHHTTTEEEEEEESSCHHHHHH
T ss_pred             CCCCCCCCCcEeecccCCC-cEeHHHHcCCCeEEEEEECCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEeCCCHHHHHH
Confidence            678999999999999  99 8999999998 7777775599999999999999999999999999999999999998888


Q ss_pred             HHH-------HcCCCeEEEEcCChhHHHHhCCCccC----CC-CCCccEEEEEcCCCcEEEEEeCCCCCCccHHHHHHHH
Q 028030          145 FAK-------KYRLPYTLLSDEGNKVRKEWGVPADF----FG-SLPGRQTYILDKNGVVQLIYNNQFQPEKHIDETLKFL  212 (215)
Q Consensus       145 ~~~-------~~~~~~~~~~d~~~~~~~~~g~~~~~----~g-~~p~~~~~lid~~G~v~~~~~g~~~~~~~~~~il~~l  212 (215)
                      |.+       +++++|+++.|.++++++.||+....    .| ....|++||||++|+|++.+.+......+.+++++.|
T Consensus        82 ~~~~i~~~~~~~~~~fpil~D~~~~va~~ygv~~~~~~~~~g~~~~~p~~flID~~G~I~~~~~~~~~~g~~~~ell~~i  161 (220)
T 1xcc_A           82 WIEDIKYYGKLNKWEIPIVCDESRELANKLKIMDEQEKDITGLPLTCRCLFFISPEKKIKATVLYPATTGRNAHEILRVL  161 (220)
T ss_dssp             HHHHHHHHHTCSCCCCCEEECTTSHHHHHHTCEEEEEECTTSCEEECEEEEEECTTSBEEEEEEECTTBCCCHHHHHHHH
T ss_pred             HHHHHHHHhcCCCCcceeEECchhHHHHHhCCCCcccccCCCCCcccceEEEECCCCEEEEEEecCCCCCCCHHHHHHHH
Confidence            887       47889999999999999999996311    11 0123499999999999999877655556788888777


Q ss_pred             hc
Q 028030          213 QS  214 (215)
Q Consensus       213 ~~  214 (215)
                      ++
T Consensus       162 ~~  163 (220)
T 1xcc_A          162 KS  163 (220)
T ss_dssp             HH
T ss_pred             HH
Confidence            53

>3kcm_A Thioredoxin family protein; SGX, thioredoxin protein, PSI, structural genomics, protein initiative; 2.45A {Geobacter metallireducens gs-15}

Probab=99.96  E-value=1.6e-27  Score=177.93  Aligned_cols=137  Identities=23%  Similarity=0.369  Sum_probs=122.9

Q ss_pred             CCCCCCCCCeEEeCCCCCeeecCCcCCCcEEEEEEcCCCChhhHHHHHHHHHHHHHHHHcCcEEEEEeCCC--HHHHHHH
Q 028030           68 VSKGQAPPSFTLKDQEGRNVSLSKFKGKPVVVYFYPADETPGCTKQACAFRDSYEKFKKAGAEVIGISGDD--SSSHKAF  145 (215)
Q Consensus        68 ~~~g~~~P~f~l~~~~g~~~~l~~~~gk~~ll~f~~a~~C~~C~~~~~~l~~l~~~~~~~~v~vv~vs~d~--~~~~~~~  145 (215)
                      +.+|+++|+|++.+.+|+.+++++++||++||+|| ++||++|+.+++.|.++++++++.++.+++|+.|.  .+.+++|
T Consensus         2 ~~~G~~~p~~~l~~~~g~~~~l~~~~gk~vll~f~-~~~C~~C~~~~~~l~~~~~~~~~~~~~~v~v~~d~~~~~~~~~~   80 (154)
T 3kcm_A            2 SLEENPAPDFTLNTLNGEVVKLSDLKGQVVIVNFW-ATWCPPCREEIPSMMRLNAAMAGKPFRMLCVSIDEGGKVAVEEF   80 (154)
T ss_dssp             -CTTSBCCCCEEECTTSCEEEGGGGTTSEEEEEEE-CTTCHHHHHHHHHHHHHHHHTTTSSEEEEEEECCTTHHHHHHHH
T ss_pred             CCCCCCCCCeEEEcCCCCEEehhhcCCCEEEEEEE-CCCCHHHHHHHHHHHHHHHHhccCCeEEEEEEcCCcchHHHHHH
Confidence            36899999999999999999999999999999999 99999999999999999999998889999999986  7899999


Q ss_pred             HHHcCCCeEEEEcCChhHHHHhCCCccCCCCCCccEEEEEcCCCcEEEEEeCCCCC-CccHHHHHHHH
Q 028030          146 AKKYRLPYTLLSDEGNKVRKEWGVPADFFGSLPGRQTYILDKNGVVQLIYNNQFQP-EKHIDETLKFL  212 (215)
Q Consensus       146 ~~~~~~~~~~~~d~~~~~~~~~g~~~~~~g~~p~~~~~lid~~G~v~~~~~g~~~~-~~~~~~il~~l  212 (215)
                      +++++++|+++.|.+..+.+.|++..     +|  +++|||++|+|++.+.|.... .+.+.+.++.|
T Consensus        81 ~~~~~~~~~~~~d~~~~~~~~~~v~~-----~P--~~~lid~~G~i~~~~~g~~~~~~~~l~~~l~~l  141 (154)
T 3kcm_A           81 FRKTGFTLPVLLDADKRVGKLYGTTG-----VP--ETFVIDRHGVILKKVVGAMEWDHPEVIAFLNNE  141 (154)
T ss_dssp             HHHHCCCCCEEECTTCHHHHHHTCCS-----BC--EEEEECTTSBEEEEEESCCCTTSHHHHHHHHTC
T ss_pred             HHHcCCCeeEEecCchHHHHHhCCCC-----CC--eEEEECCCCcEEEEEcCCCccccHHHHHHHHHH
Confidence            99999999999999999999999987     88  999999999999999986532 23444444443

>2p5q_A Glutathione peroxidase 5; thioredoxin fold, oxidoreductase; 2.00A {Populus trichocarpa x populusdeltoides} PDB: 2p5r_A

Probab=99.96  E-value=4e-28  Score=184.00  Aligned_cols=145  Identities=20%  Similarity=0.379  Sum_probs=116.8

Q ss_pred             cCCCCCCCCCeEEeCCCCCeeecCCcCCCcEEEEEEcCCCChhhHHHHHHHHHHHHHHHHcCcEEEEEeCC--------C
Q 028030           67 KVSKGQAPPSFTLKDQEGRNVSLSKFKGKPVVVYFYPADETPGCTKQACAFRDSYEKFKKAGAEVIGISGD--------D  138 (215)
Q Consensus        67 ~~~~g~~~P~f~l~~~~g~~~~l~~~~gk~~ll~f~~a~~C~~C~~~~~~l~~l~~~~~~~~v~vv~vs~d--------~  138 (215)
                      .+++|+++|+|++.|.+|+.+++++++||++||+|| ++||++|+.+++.|++++++|+++|++||+|+.|        +
T Consensus         5 ~~~~g~~~p~f~l~~~~g~~~~l~~~~gk~vll~f~-a~~C~~C~~~~~~l~~l~~~~~~~~~~vv~vs~d~~~~~~~~~   83 (170)
T 2p5q_A            5 TSKNPESVHDFTVKDAKENDVDLSIFKGKVLLIVNV-ASKCGMTNSNYAEMNQLYEKYKDQGLEILAFPCNQFGEEEPGT   83 (170)
T ss_dssp             -----CCGGGCEEEBTTSCEEEGGGGTTSEEEEEEE-CSSSTTHHHHHHHHHHHHHHHGGGTEEEEEEECCTTTTCCCSC
T ss_pred             cCCCCccccceEEEcCCCCEecHHHhCCCEEEEEEE-eccCCccHHHHHHHHHHHHHhccCCEEEEEEECCCCCCCCCCC
Confidence            457899999999999999999999999999999999 9999999999999999999999889999999985        5


Q ss_pred             HHHHHHHHH-HcCCCeEEE--EcCChhHH----H-----HhCCCccCCCCCC-ccEEEEEcCCCcEEEEEeCCCCCCccH
Q 028030          139 SSSHKAFAK-KYRLPYTLL--SDEGNKVR----K-----EWGVPADFFGSLP-GRQTYILDKNGVVQLIYNNQFQPEKHI  205 (215)
Q Consensus       139 ~~~~~~~~~-~~~~~~~~~--~d~~~~~~----~-----~~g~~~~~~g~~p-~~~~~lid~~G~v~~~~~g~~~~~~~~  205 (215)
                      .+.+++|++ +++++|+++  .|.++...    +     .+|+..   ..+| ++++||||++|+|++.+.|..+.+...
T Consensus        84 ~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~~~~~~~~---~~~p~~~~~~lid~~G~i~~~~~g~~~~~~l~  160 (170)
T 2p5q_A           84 NDQITDFVCTRFKSEFPIFDKIDVNGENASPLYRFLKLGKWGIFG---DDIQWNFAKFLVNKDGQVVDRYYPTTSPLSLE  160 (170)
T ss_dssp             HHHHHHHHHHHTCCCSCBBCCCBSSSTTBCHHHHHHHTHHHHTTC---SCCCSTTCEEEECTTSCEEEEECTTSCGGGGH
T ss_pred             HHHHHHHHHHhcCCCceeEeeeccCCCchHHHHHHHHhcCCCccC---CcccccccEEEECCCCCEEEeeCCCCCHHHHH
Confidence            789999999 789999998  56665432    1     224411   0144 348999999999999999976666666


Q ss_pred             HHHHHHHhcC
Q 028030          206 DETLKFLQSS  215 (215)
Q Consensus       206 ~~il~~l~~s  215 (215)
                      +.+.++|++|
T Consensus       161 ~~i~~ll~~s  170 (170)
T 2p5q_A          161 RDIKQLLEIS  170 (170)
T ss_dssp             HHHHHHTTCC
T ss_pred             HHHHHHhhcC
Confidence            6666666654

>1xzo_A BSSCO, hypothetical protein YPMQ; thioredoxin-like fold, structural genomics, montreal-kingsto bacterial structural genomics initiative, BSGI; 1.70A {Bacillus subtilis} SCOP: c.47.1.10 PDB: 1on4_A

Probab=99.96  E-value=7.5e-28  Score=183.31  Aligned_cols=133  Identities=23%  Similarity=0.327  Sum_probs=116.0

Q ss_pred             ccCCCCCCCCCeEEeCCCCCeeecCCcCCCcEEEEEEcCCCCh-hhHHHHHHHHHHHHHHHHcC--cEEEEEeCC----C
Q 028030           66 AKVSKGQAPPSFTLKDQEGRNVSLSKFKGKPVVVYFYPADETP-GCTKQACAFRDSYEKFKKAG--AEVIGISGD----D  138 (215)
Q Consensus        66 ~~~~~g~~~P~f~l~~~~g~~~~l~~~~gk~~ll~f~~a~~C~-~C~~~~~~l~~l~~~~~~~~--v~vv~vs~d----~  138 (215)
                      ..+.+|+++|+|++.|.+|+.+++++++||++||+|| ++||+ +|..+++.|.++++++++++  ++||+|+.|    +
T Consensus         5 ~~l~~g~~~p~f~l~~~~G~~~~l~~~~gk~vll~f~-~~~C~~~C~~~~~~l~~l~~~~~~~~~~~~vv~is~d~~~d~   83 (174)
T 1xzo_A            5 IKDPLNYEVEPFTFQNQDGKNVSLESLKGEVWLADFI-FTNCETICPPMTAHMTDLQKKLKAENIDVRIISFSVDPENDK   83 (174)
T ss_dssp             CCSCCCEECCCCEEECTTSCEEETGGGTTCCEEEEEE-CSCCSSCCCSHHHHHHHHHHHHHHTTCCCEEEEEESCTTTCC
T ss_pred             CcCccccccCCcEEEcCCCCEEehhhcCCCEEEEEEE-cCCCcchhHHHHHHHHHHHHHhhhcCCcEEEEEEEeCCCCCC
Confidence            5678999999999999999999999999999999999 99999 99999999999999999886  999999986    6


Q ss_pred             HHHHHHHHHHcCCCe---EEEEcCChhHHHHhCCC---------ccCCCCCCccEEEEEcCCCcEEEEEeCCC
Q 028030          139 SSSHKAFAKKYRLPY---TLLSDEGNKVRKEWGVP---------ADFFGSLPGRQTYILDKNGVVQLIYNNQF  199 (215)
Q Consensus       139 ~~~~~~~~~~~~~~~---~~~~d~~~~~~~~~g~~---------~~~~g~~p~~~~~lid~~G~v~~~~~g~~  199 (215)
                      ++.+++|+++++++|   +++.|.+.++.+.|++.         ...++..+.|++||||++|+|++.+.|..
T Consensus        84 ~~~~~~~~~~~~~~~~~~~~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~lid~~G~i~~~~~g~~  156 (174)
T 1xzo_A           84 PKQLKKFAANYPLSFDNWDFLTGYSQSEIEEFALKSFKAIVKKPEGEDQVIHQSSFYLVGPDGKVLKDYNGVE  156 (174)
T ss_dssp             HHHHHHHHTTSCCCGGGEEEEBCSCHHHHHHHHHHHHCCCCCCCSSCCSCCSCCEEEEECTTSEEEEEEESSS
T ss_pred             HHHHHHHHHHcCCCCcceEEEeCCCHHHHHHHHHhhcCeeEeecCCCCeeeeeeEEEEECCCCeEEEEEcCCC
Confidence            789999999999998   99999888877776531         11123344459999999999999999865

>2f9s_A Thiol-disulfide oxidoreductase RESA; thioredoxin-like protein; HET: MSE; 1.40A {Bacillus subtilis} SCOP: c.47.1.10 PDB: 1st9_A 1su9_A 2h1d_A 2h1b_A 2h1a_A 2h19_A 2h1g_A 3c71_A 3c73_A

Probab=99.96  E-value=7.4e-28  Score=179.41  Aligned_cols=134  Identities=25%  Similarity=0.539  Sum_probs=120.3

Q ss_pred             CCCCCCCCeEEeCCCCCeeecCCcCCCcEEEEEEcCCCChhhHHHHHHHHHHHHHHHHcCcEEEEEeCC-CHHHHHHHHH
Q 028030           69 SKGQAPPSFTLKDQEGRNVSLSKFKGKPVVVYFYPADETPGCTKQACAFRDSYEKFKKAGAEVIGISGD-DSSSHKAFAK  147 (215)
Q Consensus        69 ~~g~~~P~f~l~~~~g~~~~l~~~~gk~~ll~f~~a~~C~~C~~~~~~l~~l~~~~~~~~v~vv~vs~d-~~~~~~~~~~  147 (215)
                      ++|+++|+|++.|.+|+.+++++++||++||+|| ++||++|+.+++.|.+++++++++++.|++|+.| +++.+++|++
T Consensus         1 ~~G~~~p~~~l~~~~g~~~~l~~~~gk~vlv~F~-~~~C~~C~~~~~~l~~~~~~~~~~~v~vv~v~~d~~~~~~~~~~~   79 (151)
T 2f9s_A            1 SEGSDAPNFVLEDTNGKRIELSDLKGKGVFLNFW-GTWCEPCKKEFPYMANQYKHFKSQGVEIVAVNVGESKIAVHNFMK   79 (151)
T ss_dssp             -CCEECCCCEEECTTCCEEEGGGGTTSEEEEEEE-CTTCHHHHHHHHHHHHHHHHHGGGTEEEEEEEESCCHHHHHHHHH
T ss_pred             CCCCcCCcceeEcCCCCEEEHHHcCCCEEEEEEE-CCCCHHHHHHHHHHHHHHHHhccCCeEEEEEECCCCHHHHHHHHH
Confidence            3789999999999999999999999999999999 9999999999999999999999888999999985 5689999999


Q ss_pred             HcCCCeEEEEcCChhHHHHhCCCccCCCCCCccEEEEEcCCCcEEEEEeCCCCCCccHHHHHHH
Q 028030          148 KYRLPYTLLSDEGNKVRKEWGVPADFFGSLPGRQTYILDKNGVVQLIYNNQFQPEKHIDETLKF  211 (215)
Q Consensus       148 ~~~~~~~~~~d~~~~~~~~~g~~~~~~g~~p~~~~~lid~~G~v~~~~~g~~~~~~~~~~il~~  211 (215)
                      +++++|+++.|.+..+.+.|++..     +|  ++++||++|+|+..+.|..+ .+.+.+.++.
T Consensus        80 ~~~~~~~~~~d~~~~~~~~~~v~~-----~P--~~~lid~~G~i~~~~~G~~~-~~~l~~~l~~  135 (151)
T 2f9s_A           80 SYGVNFPVVLDTDRQVLDAYDVSP-----LP--TTFLINPEGKVVKVVTGTMT-ESMIHDYMNL  135 (151)
T ss_dssp             HHTCCSCEEEETTSHHHHHTTCCS-----SC--EEEEECTTSEEEEEEESCCC-HHHHHHHHHH
T ss_pred             HcCCCceEEECCchHHHHhcCCCC-----CC--eEEEECCCCcEEEEEeCCCC-HHHHHHHHHH
Confidence            999999999999999999999987     88  99999999999999988643 3334444443

>2gs3_A PHGPX, GPX-4, phospholipid hydroperoxide glutathione peroxidase; GSHPX-4,phospholipid hydroperoxide; 1.90A {Homo sapiens}

Probab=99.95  E-value=6.7e-28  Score=186.31  Aligned_cols=138  Identities=19%  Similarity=0.277  Sum_probs=113.3

Q ss_pred             ccCCCCCCCCCeEEeCCCCCeeecCCcCCCcEEEEEEcCCCChhhHHHHHHHHHHHHHHHHcCcEEEEEeCC--------
Q 028030           66 AKVSKGQAPPSFTLKDQEGRNVSLSKFKGKPVVVYFYPADETPGCTKQACAFRDSYEKFKKAGAEVIGISGD--------  137 (215)
Q Consensus        66 ~~~~~g~~~P~f~l~~~~g~~~~l~~~~gk~~ll~f~~a~~C~~C~~~~~~l~~l~~~~~~~~v~vv~vs~d--------  137 (215)
                      ..+++|+++|+|+++|.+|+++++++++||++||+|| ++||++|+.+++.|++++++|+++|++||+|+.|        
T Consensus        21 ~~~~~g~~~p~f~l~~~~G~~v~l~~~~Gk~vlv~F~-atwC~~C~~~~~~l~~l~~~~~~~~v~vv~is~d~~~~~~~~   99 (185)
T 2gs3_A           21 QSMRCARSMHEFSAKDIDGHMVNLDKYRGFVCIVTNV-ASQGGKTEVNYTQLVDLHARYAECGLRILAFPCNQFGKQEPG   99 (185)
T ss_dssp             GGGGGCCCGGGCEEEBTTSCEEEGGGGTTSEEEEEEE-CSSSTTHHHHHHHHHHHHHHHGGGTEEEEEEECCTTTTCCCS
T ss_pred             hhccCCCCcCCceeEcCCCCEeeHHHcCCCEEEEEEe-cCCCCchHHHHHHHHHHHHHhhcCCeEEEEEECcccCCCCCC
Confidence            4567899999999999999999999999999999999 9999999999999999999999989999999975        


Q ss_pred             CHHHHHHHHHHcCCCeEEEE--cCChh----HHHHh-------CCCccCCCCCCccEEEEEcCCCcEEEEEeCCCCCCcc
Q 028030          138 DSSSHKAFAKKYRLPYTLLS--DEGNK----VRKEW-------GVPADFFGSLPGRQTYILDKNGVVQLIYNNQFQPEKH  204 (215)
Q Consensus       138 ~~~~~~~~~~~~~~~~~~~~--d~~~~----~~~~~-------g~~~~~~g~~p~~~~~lid~~G~v~~~~~g~~~~~~~  204 (215)
                      +++.+++|+++++++|+++.  |.++.    ++..+       |+.......+|  ++||||++|+|++.+.|..+.+..
T Consensus       100 ~~~~~~~~~~~~~~~~p~~~~~d~~~~~~~~~~~~l~~~~~~~g~~~~~i~~~P--~~~lid~~G~i~~~~~g~~~~~~l  177 (185)
T 2gs3_A          100 SNEEIKEFAAGYNVKFDMFSKICVNGDDAHPLWKWMKIQPKGKGILGNAIKWNF--TKFLIDKNGCVVKRYGPMEEPLVI  177 (185)
T ss_dssp             CHHHHHHHHHHTTCCSEEBCCCBSSSTTBCHHHHHHTTSGGGCCSSSSSCCSSC--CEEEECTTSCEEEEECTTSCGGGG
T ss_pred             CHHHHHHHHHHcCCCCeeeeeeccCChhhhHHHHHHHhhcccccccCCcccccc--eEEEECCCCCEEEeeCCCCCHHHH
Confidence            46889999999999999986  44443    33333       33221111245  999999999999999986555443


Q ss_pred             HH
Q 028030          205 ID  206 (215)
Q Consensus       205 ~~  206 (215)
                      .+
T Consensus       178 ~~  179 (185)
T 2gs3_A          178 EK  179 (185)
T ss_dssp             GG
T ss_pred             HH
Confidence            33

>3a2v_A Probable peroxiredoxin; thioredoxin peroxidase, hydrogen peroxide, antioxidant, oxidoreductase, redox-active center; 1.65A {Aeropyrum pernix} PDB: 1x0r_A 2zct_A 2nvl_A 2e2g_A 2cv4_A* 3a5w_A 2e2m_A 3a2x_A 3a2w_A

Probab=99.95  E-value=9.6e-28  Score=193.60  Aligned_cols=147  Identities=26%  Similarity=0.489  Sum_probs=126.7

Q ss_pred             cCCCCCCCCCeEEeCCCCCeeec-CCc--CCCcEEEEEEcCCCChhhHHHHHHHHHHHHHHHHcCcEEEEEeCCCHHHHH
Q 028030           67 KVSKGQAPPSFTLKDQEGRNVSL-SKF--KGKPVVVYFYPADETPGCTKQACAFRDSYEKFKKAGAEVIGISGDDSSSHK  143 (215)
Q Consensus        67 ~~~~g~~~P~f~l~~~~g~~~~l-~~~--~gk~~ll~f~~a~~C~~C~~~~~~l~~l~~~~~~~~v~vv~vs~d~~~~~~  143 (215)
                      .+.+|+++|+|++.+.+| .+++ +++  +||++||+||+++||++|..+++.|++++++|+++|++||+||+|+.+.+.
T Consensus         4 ~~~iG~~aPdF~l~~~~G-~v~l~~d~l~~GK~vVL~~fpa~~CpvC~tEl~~l~~l~~ef~~~gv~VI~VS~Ds~~~~~   82 (249)
T 3a2v_A            4 IPLIGERFPEMEVTTDHG-VIKLPDHYVSQGKWFVLFSHPADFTPVCTTEFVSFARRYEDFQRLGVDLIGLSVDSVFSHI   82 (249)
T ss_dssp             ECCTTSBCCCEEEEETTE-EEEETHHHHTTTCEEEEECCSCTTCHHHHHHHHHHHHTHHHHHHTTEEEEEEESSCHHHHH
T ss_pred             cCCCCCCCCCeEEEcCCC-CEecHHHHhhCCCEEEEEEEcCCCCcChHHHHHHHHHHHHHHHhCCcEEEEEECCCHHHHH
Confidence            457999999999999999 7999 999  999877766559999999999999999999999999999999999999888


Q ss_pred             HHHHH------cCCCeEEEEcCChhHHHHhCCCccCCCCCCccEEEEEcCCCcEEEEEeCCCCCCccHHHHHHHHhc
Q 028030          144 AFAKK------YRLPYTLLSDEGNKVRKEWGVPADFFGSLPGRQTYILDKNGVVQLIYNNQFQPEKHIDETLKFLQS  214 (215)
Q Consensus       144 ~~~~~------~~~~~~~~~d~~~~~~~~~g~~~~~~g~~p~~~~~lid~~G~v~~~~~g~~~~~~~~~~il~~l~~  214 (215)
                      +|.+.      .+++||++.|.++++++.||+.....|....|.+||||++|+|++.+.+......+.+++++.|++
T Consensus        83 ~w~~~~~~~~~~~i~fPil~D~~~~ia~~ygv~~~~~g~~~~p~~fIID~dG~I~~~~~~~~~~gr~~~Ellr~I~a  159 (249)
T 3a2v_A           83 KWKEWIERHIGVRIPFPIIADPQGTVARRLGLLHAESATHTVRGVFIVDARGVIRTMLYYPMELGRLVDEILRIVKA  159 (249)
T ss_dssp             HHHHHHHHHTCCCCCSCEEECTTSHHHHHHTCCCTTCSSSCCEEEEEECTTSBEEEEEEECTTBCCCHHHHHHHHHH
T ss_pred             HHHHHHHHhcCCCCceeEEECCchHHHHHhCCccccCCCcccceEEEECCCCeEEEEEecCCcccchhHHHHHHHHH
Confidence            88875      578999999999999999999854333223349999999999999988866555678888887753

>3hdc_A Thioredoxin family protein; ATCC53774, DSM 7210, , structural genomics, PSI-2, protein structure initiative; 1.77A {Geobacter metallireducens gs-15}

Probab=99.95  E-value=1.1e-27  Score=180.24  Aligned_cols=138  Identities=24%  Similarity=0.478  Sum_probs=125.1

Q ss_pred             cccCCCCCCCCCeEEeCCCCCeeecCCcCCCcEEEEEEcCCCChhhHHHHHHHHHHHHHHHHcCcEEEEEeCCCHHHHHH
Q 028030           65 SAKVSKGQAPPSFTLKDQEGRNVSLSKFKGKPVVVYFYPADETPGCTKQACAFRDSYEKFKKAGAEVIGISGDDSSSHKA  144 (215)
Q Consensus        65 ~~~~~~g~~~P~f~l~~~~g~~~~l~~~~gk~~ll~f~~a~~C~~C~~~~~~l~~l~~~~~~~~v~vv~vs~d~~~~~~~  144 (215)
                      ...+++|+++|+|++.+.+|+.+++++++||++||+|| ++||++|+.+++.|.++++++++.++.+++|+.|+  .+++
T Consensus        12 ~~~~~~G~~~p~f~l~~~~g~~~~l~~~~gk~vll~F~-~~~C~~C~~~~~~l~~~~~~~~~~~~~~v~v~~d~--~~~~   88 (158)
T 3hdc_A           12 APLVRTGALAPNFKLPTLSGENKSLAQYRGKIVLVNFW-ASWCPYCRDEMPSMDRLVKSFPKGDLVVLAVNVEK--RFPE   88 (158)
T ss_dssp             SCCCCTTSBCCCCEEECTTSCEEESGGGTTSEEEEEEE-CTTCHHHHHHHHHHHHHHHHSSTTSEEEEEEECSS--SCCG
T ss_pred             CcccCCCCcCCCceeEcCCCCEEehHHhCCCEEEEEEE-CCcCHHHHHHHHHHHHHHHHcccCCeEEEEEeCCH--HHHH
Confidence            35678999999999999999999999999999999999 99999999999999999999998889999999988  5788


Q ss_pred             HHHHcCCCeEEEEcCChhHHHHhCCCccCCCCCCccEEEEEcCCCcEEEEEeCCCCCCccHHHHHHHHhc
Q 028030          145 FAKKYRLPYTLLSDEGNKVRKEWGVPADFFGSLPGRQTYILDKNGVVQLIYNNQFQPEKHIDETLKFLQS  214 (215)
Q Consensus       145 ~~~~~~~~~~~~~d~~~~~~~~~g~~~~~~g~~p~~~~~lid~~G~v~~~~~g~~~~~~~~~~il~~l~~  214 (215)
                      |+++++++|+++.|.+..+.+.|++..     +|  ++||||++|+|+..+.|....+  .+++++.+++
T Consensus        89 ~~~~~~~~~~~~~d~~~~~~~~~~v~~-----~P--~~~lid~~G~i~~~~~G~~~~~--~~~~~~~~~~  149 (158)
T 3hdc_A           89 KYRRAPVSFNFLSDATGQVQQRYGANR-----LP--DTFIVDRKGIIRQRVTGGIEWD--APKVVSYLKS  149 (158)
T ss_dssp             GGGGCCCSCEEEECTTSHHHHHTTCCS-----SS--EEEEECTTSBEEEEEESCCCTT--SHHHHHHHHT
T ss_pred             HHHHcCCCceEEECchHHHHHHhCCCC-----cc--eEEEEcCCCCEEEEEeCCCccc--hHHHHHHHHh
Confidence            999999999999999999999999987     88  9999999999999999965443  3666666553

>3kh7_A Thiol:disulfide interchange protein DSBE; TRX-like, thiol-disulfide exchange, cell inner membrane, CYT C-type biogenesis, disulfide bond; 1.75A {Pseudomonas aeruginosa} PDB: 3kh9_A

Probab=99.95  E-value=2.4e-27  Score=181.88  Aligned_cols=137  Identities=22%  Similarity=0.397  Sum_probs=119.8

Q ss_pred             ccccCCCCCCCCCeEEeCCCC--CeeecCCcCCCcEEEEEEcCCCChhhHHHHHHHHHHHHHHHHcCcEEEEEeC-CCHH
Q 028030           64 ISAKVSKGQAPPSFTLKDQEG--RNVSLSKFKGKPVVVYFYPADETPGCTKQACAFRDSYEKFKKAGAEVIGISG-DDSS  140 (215)
Q Consensus        64 ~~~~~~~g~~~P~f~l~~~~g--~~~~l~~~~gk~~ll~f~~a~~C~~C~~~~~~l~~l~~~~~~~~v~vv~vs~-d~~~  140 (215)
                      ....+.+|+++|+|++.+.+|  +.+++++++||++||+|| ++||++|+.+++.|++++++    |++||+|+. |+++
T Consensus        26 ~~~~~~~G~~~P~f~l~~~~g~~~~~~l~~~~gk~vll~F~-a~~C~~C~~~~~~l~~l~~~----~v~vv~vs~~d~~~  100 (176)
T 3kh7_A           26 ELPSALIGKPFPAFDLPSVQDPARRLTEADLKGKPALVNVW-GTWCPSCRVEHPELTRLAEQ----GVVIYGINYKDDNA  100 (176)
T ss_dssp             GSTTTTTTSBCCCCEEEBSSCTTSEEEGGGGCSSCEEEEEE-CTTCHHHHHHHHHHHHHHHT----TCEEEEEEESCCHH
T ss_pred             cccccccCCcCCCcEecccCCCCceecHHHhCCCEEEEEEE-CCcCHHHHHHHHHHHHHHHC----CCEEEEEeCCCCHH
Confidence            445678999999999999999  889999999999999999 99999999999999998775    799999995 6789


Q ss_pred             HHHHHHHHcCCCeE-EEEcCChhHHHHhCCCccCCCCCCccEEEEEcCCCcEEEEEeCCCCCCccHHHHHHHH
Q 028030          141 SHKAFAKKYRLPYT-LLSDEGNKVRKEWGVPADFFGSLPGRQTYILDKNGVVQLIYNNQFQPEKHIDETLKFL  212 (215)
Q Consensus       141 ~~~~~~~~~~~~~~-~~~d~~~~~~~~~g~~~~~~g~~p~~~~~lid~~G~v~~~~~g~~~~~~~~~~il~~l  212 (215)
                      .+++|+++++++|+ ++.|.+..+.+.||+..     +|  ++||||++|+|++.+.|..+.+...+.+.++|
T Consensus       101 ~~~~~~~~~~~~~~~~~~d~~~~~~~~~~v~~-----~P--~~~lid~~G~i~~~~~g~~~~~~l~~~l~~~l  166 (176)
T 3kh7_A          101 AAIKWLNELHNPYLLSISDADGTLGLDLGVYG-----AP--ETYLIDKQGIIRHKIVGVVDQKVWREQLAPLY  166 (176)
T ss_dssp             HHHHHHHHTTCCCSEEEEETTCHHHHHHTCCS-----SC--EEEEECTTCBEEEEEESCCCHHHHHHHTHHHH
T ss_pred             HHHHHHHHcCCCCceEEECCcchHHHHcCCCC-----CC--eEEEECCCCeEEEEEcCCCCHHHHHHHHHHHH
Confidence            99999999999987 57899999999999987     88  99999999999999999765444333333333

>2l5o_A Putative thioredoxin; structural genomics, unknown function, PSI-2, protein struct initiative; NMR {Neisseria meningitidis serogroup B}

Probab=99.95  E-value=2.1e-27  Score=177.09  Aligned_cols=137  Identities=23%  Similarity=0.454  Sum_probs=121.8

Q ss_pred             CCCCCCCCeEEeCCCCCeeecCCcCCCcEEEEEEcCCCChhhHHHHHHHHHHHHHHHHcCcEEEEEeC--CCHHHHHHHH
Q 028030           69 SKGQAPPSFTLKDQEGRNVSLSKFKGKPVVVYFYPADETPGCTKQACAFRDSYEKFKKAGAEVIGISG--DDSSSHKAFA  146 (215)
Q Consensus        69 ~~g~~~P~f~l~~~~g~~~~l~~~~gk~~ll~f~~a~~C~~C~~~~~~l~~l~~~~~~~~v~vv~vs~--d~~~~~~~~~  146 (215)
                      .+|+++|+|++.+.+|+.+++++++||++||+|| ++||++|+.+++.|++++++++++++.|++|+.  |+.+.+++|+
T Consensus         3 ~~G~~~p~~~l~~~~g~~~~l~~~~gk~~lv~f~-~~~C~~C~~~~~~l~~l~~~~~~~~~~vv~v~~~~~~~~~~~~~~   81 (153)
T 2l5o_A            3 LDSKTAPAFSLPDLHGKTVSNADLQGKVTLINFW-FPSCPGCVSEMPKIIKTANDYKNKNFQVLAVAQPIDPIESVRQYV   81 (153)
T ss_dssp             -CCTTCCSCEEECTTSCEEEHHHHTTCEEEEEEE-CTTCTTHHHHHHHHHHHHHHGGGTTEEEEEEECTTSCHHHHHHHH
T ss_pred             CCCCCCCCcEeecCCCCCccHHHhCCCEEEEEEE-CCCCccHHHHHHHHHHHHHHhccCCeEEEEEecCCCCHHHHHHHH
Confidence            4799999999999999999999999999999999 999999999999999999999988999999994  6789999999


Q ss_pred             HHcCCCeEEEEcCChhHHHHhCCCccCCCCCCccEEEEEcCCCcEEEEEeCCCCCCccHHHHHHHHh
Q 028030          147 KKYRLPYTLLSDEGNKVRKEWGVPADFFGSLPGRQTYILDKNGVVQLIYNNQFQPEKHIDETLKFLQ  213 (215)
Q Consensus       147 ~~~~~~~~~~~d~~~~~~~~~g~~~~~~g~~p~~~~~lid~~G~v~~~~~g~~~~~~~~~~il~~l~  213 (215)
                      ++++++|+++.|.+..+.+.||+..     +|  ++++||++|+|+..+.|..+.+...+.+.++|+
T Consensus        82 ~~~~~~~~~~~d~~~~~~~~~~i~~-----~P--~~~lid~~G~i~~~~~g~~~~~~l~~~l~~ll~  141 (153)
T 2l5o_A           82 KDYGLPFTVMYDADKAVGQAFGTQV-----YP--TSVLIGKKGEILKTYVGEPDFGKLYQEIDTAWR  141 (153)
T ss_dssp             HHTTCCSEEEECSSCHHHHHHTCCS-----SS--EEEEECSSSCCCEEEESSCCHHHHHHHHHHHHH
T ss_pred             HHcCCCceEEcCchHHHHHHcCCCc-----cC--eEEEECCCCcEEEEEcCCCCHHHHHHHHHHHHH
Confidence            9999999999999999999999987     88  999999999999999986544443333444443

>2lrt_A Uncharacterized protein; structural genomics, thioredoxin-like, NEW YORK structural G research consortium, nysgrc, PSI-biology; NMR {Bacteroides vulgatus}

Probab=99.95  E-value=1.4e-27  Score=178.78  Aligned_cols=123  Identities=25%  Similarity=0.350  Sum_probs=111.5

Q ss_pred             cCCCCCCCCCeEEeCCCCCeeecCCcCCCcEEEEEEcCCCChhhHHHHHHHHHHHHHHHHcCcEEEEEeCCCH-HHHHHH
Q 028030           67 KVSKGQAPPSFTLKDQEGRNVSLSKFKGKPVVVYFYPADETPGCTKQACAFRDSYEKFKKAGAEVIGISGDDS-SSHKAF  145 (215)
Q Consensus        67 ~~~~g~~~P~f~l~~~~g~~~~l~~~~gk~~ll~f~~a~~C~~C~~~~~~l~~l~~~~~~~~v~vv~vs~d~~-~~~~~~  145 (215)
                      ....|+++|+|++.+.+|+.+++++++||++||+|| ++||++|+.+++.|++++++|+++|++|++|+.|+. +.+++|
T Consensus         8 ~~~~g~~~p~f~l~~~~G~~~~l~~~~gk~vll~F~-a~wC~~C~~~~~~l~~l~~~~~~~~~~vv~i~~d~~~~~~~~~   86 (152)
T 2lrt_A            8 DKIKEASIIDIQLKDLKGNTRSLTDLKGKVVLIDFT-VYNNAMSAAHNLALRELYNKYASQGFEIYQISLDGDEHFWKTS   86 (152)
T ss_dssp             SSSCTTCSCCCCEEBTTSCEECTTTGGGSEEEEEEE-CTTCHHHHHHHHHHHHHHHHHGGGTEEEEEEECSCCHHHHHHH
T ss_pred             hhccCCCCCCeEEEcCCCCEEeHHHhCCCEEEEEEE-cCCChhhHHHHHHHHHHHHHhccCCeEEEEEEccCCHHHHHHH
Confidence            446789999999999999999999999999999999 999999999999999999999998999999999865 556777


Q ss_pred             HHHcCCCeEEEEcCChh---HHHHhCCCccCCCCCCccEEEEEcCCCcEEEEEeCCC
Q 028030          146 AKKYRLPYTLLSDEGNK---VRKEWGVPADFFGSLPGRQTYILDKNGVVQLIYNNQF  199 (215)
Q Consensus       146 ~~~~~~~~~~~~d~~~~---~~~~~g~~~~~~g~~p~~~~~lid~~G~v~~~~~g~~  199 (215)
                      .+  +++|+++.|.++.   +.+.||+..     +|  ++||||++|+|++.+.|..
T Consensus        87 ~~--~~~~~~~~d~~~~~~~~~~~~~v~~-----~P--~~~lid~~G~i~~~~~g~~  134 (152)
T 2lrt_A           87 AD--NLPWVCVRDANGAYSSYISLYNVTN-----LP--SVFLVNRNNELSARGENIK  134 (152)
T ss_dssp             HT--TCSSEEEECSSGGGCHHHHHHTCCS-----CS--EEEEEETTTEEEEETTTCS
T ss_pred             Hh--CCCceEEECCCCcchHHHHHcCccc-----Cc--eEEEECCCCeEEEecCCHH
Confidence            64  4789999999886   999999987     88  9999999999999988853

>1jfu_A Thiol:disulfide interchange protein TLPA; thioredoxin-like, double disulfide bridge, membrane protein; 1.60A {Bradyrhizobium japonicum} SCOP: c.47.1.10

Probab=99.95  E-value=1.8e-27  Score=183.41  Aligned_cols=133  Identities=22%  Similarity=0.329  Sum_probs=119.2

Q ss_pred             ccccCCCCCCCCCeEEeCCCCCeeecCCcCCCcEEEEEEcCCCChhhHHHHHHHHHHHHHHHHcCcEEEEEeCCCH--HH
Q 028030           64 ISAKVSKGQAPPSFTLKDQEGRNVSLSKFKGKPVVVYFYPADETPGCTKQACAFRDSYEKFKKAGAEVIGISGDDS--SS  141 (215)
Q Consensus        64 ~~~~~~~g~~~P~f~l~~~~g~~~~l~~~~gk~~ll~f~~a~~C~~C~~~~~~l~~l~~~~~~~~v~vv~vs~d~~--~~  141 (215)
                      ....+.+|+++|+|++.+.+|+.+++++++||++||+|| ++||++|+.+++.|+++++++++++++|++|+.|..  +.
T Consensus        30 ~~~~~~~g~~~p~f~l~~~~G~~~~l~~~~gk~vll~F~-a~~C~~C~~~~~~l~~l~~~~~~~~~~vv~v~~d~~~~~~  108 (186)
T 1jfu_A           30 ALTMASAPLKLPDLAFEDADGKPKKLSDFRGKTLLVNLW-ATWCVPCRKEMPALDELQGKLSGPNFEVVAINIDTRDPEK  108 (186)
T ss_dssp             TCEECCSCCBCCCCEEECTTSCEEEGGGGTTSEEEEEEE-CTTCHHHHHHHHHHHHHHHHHCBTTEEEEEEECCCSCTTH
T ss_pred             hhccccCCCcCCCcEeEcCCCCEeeHHHcCCCEEEEEEE-eCCCHhHHHHHHHHHHHHHHhccCCcEEEEEECCCCCHHH
Confidence            345678999999999999999999999999999999999 999999999999999999999977899999999854  78


Q ss_pred             HHHHHHHcCCC-eEEEEcCChhHHHHhCCCccCCCCCCccEEEEEcCCCcEEEEEeCCCC
Q 028030          142 HKAFAKKYRLP-YTLLSDEGNKVRKEWGVPADFFGSLPGRQTYILDKNGVVQLIYNNQFQ  200 (215)
Q Consensus       142 ~~~~~~~~~~~-~~~~~d~~~~~~~~~g~~~~~~g~~p~~~~~lid~~G~v~~~~~g~~~  200 (215)
                      +++|+++++++ |+++.|.++.+.+.|++..+.. .+|  ++||||++|+|++.+.|...
T Consensus       109 ~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~-~~P--~~~lid~~G~i~~~~~g~~~  165 (186)
T 1jfu_A          109 PKTFLKEANLTRLGYFNDQKAKVFQDLKAIGRAL-GMP--TSVLVDPQGCEIATIAGPAE  165 (186)
T ss_dssp             HHHHHHHTTCCTTCCEECTTCHHHHHHHTTTCCS-SSS--EEEEECTTSBEEEEEESCCC
T ss_pred             HHHHHHHcCCCCCceEECCcchHHHHhccccccC-CCC--EEEEECCCCCEEEEEecCCc
Confidence            99999999994 9999999999999999963211 277  99999999999999988654

>3kij_A Probable glutathione peroxidase 8; human PDI-peroxidase, membrane, oxidoreductase, transmembrane; 1.80A {Homo sapiens} SCOP: c.47.1.0 PDB: 3cyn_A

Probab=99.95  E-value=3.7e-28  Score=186.88  Aligned_cols=144  Identities=19%  Similarity=0.269  Sum_probs=113.6

Q ss_pred             CCCCCCCCeEEeCCCCCeeecCCcCCCcEEEEEEcCCCChhhHHHHHHHHHHHHHHHHcCcEEEEEeCC--------CHH
Q 028030           69 SKGQAPPSFTLKDQEGRNVSLSKFKGKPVVVYFYPADETPGCTKQACAFRDSYEKFKKAGAEVIGISGD--------DSS  140 (215)
Q Consensus        69 ~~g~~~P~f~l~~~~g~~~~l~~~~gk~~ll~f~~a~~C~~C~~~~~~l~~l~~~~~~~~v~vv~vs~d--------~~~  140 (215)
                      .+|..+|+|+++|.+|+.+++++++||++||+|| ++||++|+.++|.|++++++|+++|++||+|++|        +++
T Consensus        13 ~~~~~~p~f~l~d~~G~~v~l~~~~Gk~vlv~F~-atwC~~C~~~~p~l~~l~~~~~~~~~~vi~is~d~~~~~~~d~~~   91 (180)
T 3kij_A           13 PKINSFYAFEVKDAKGRTVSLEKYKGKVSLVVNV-ASDCQLTDRNYLGLKELHKEFGPSHFSVLAFPCNQFGESEPRPSK   91 (180)
T ss_dssp             CCCCCGGGCEEEBTTSCEEEGGGGTTSEEEEEEE-CSSSTTHHHHHHHHHHHHHHHTTTSEEEEEEECCCSTTCCCSCHH
T ss_pred             CCcCcccceEEecCCCCEecHHHcCCCEEEEEEE-ecCCCCcHHHHHHHHHHHHHhccCCeEEEEEECCccccCCCCCHH
Confidence            5789999999999999999999999999999999 9999999999999999999999989999999964        679


Q ss_pred             HHHHHHHH-cCCCeEEEEc--CChhHH-HHhCCCccCCCCCC--ccEEEEEcCCCcEEEEEeCCCCCCccHHHHHHHHh
Q 028030          141 SHKAFAKK-YRLPYTLLSD--EGNKVR-KEWGVPADFFGSLP--GRQTYILDKNGVVQLIYNNQFQPEKHIDETLKFLQ  213 (215)
Q Consensus       141 ~~~~~~~~-~~~~~~~~~d--~~~~~~-~~~g~~~~~~g~~p--~~~~~lid~~G~v~~~~~g~~~~~~~~~~il~~l~  213 (215)
                      .+++|+++ ++++|+++.+  ..+... ..|+......+.+|  ++++||||++|+|++.+.|....+...+++.++|+
T Consensus        92 ~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~p~~~~~~~lid~~G~i~~~~~g~~~~~~l~~~i~~lL~  170 (180)
T 3kij_A           92 EVESFARKNYGVTFPIFHKIKILGSEGEPAFRFLVDSSKKEPRWNFWKYLVNPEGQVVKFWRPEEPIEVIRPDIAALVR  170 (180)
T ss_dssp             HHHHHHHHHHCCCSCBBCCCCCSSTTCCHHHHHHHHHHTCCCSSTTCEEEECTTSCEEEEECTTCCGGGTHHHHHHHHH
T ss_pred             HHHHHHHHhcCCCCceeeeeeccCccccHHHHHHHhcCCCCccccceEEEECCCCCEEEEECCCCCHHHHHHHHHHHHH
Confidence            99999999 9999998653  221110 11111000011255  12399999999999999997776665566655554

>3or5_A Thiol:disulfide interchange protein, thioredoxin protein; PSI-II, structural genomics, protein structure initiative; 1.66A {Chlorobaculum tepidum} SCOP: c.47.1.0

Probab=99.95  E-value=3.9e-27  Score=177.57  Aligned_cols=138  Identities=18%  Similarity=0.341  Sum_probs=119.4

Q ss_pred             ccCCCCCCCCCeEEeCCCCCeeecCCcCCCcEEEEEEcCCCChhhHHHHHHHHHHHHHHHHcCcEEEEEeCCC-HHHHHH
Q 028030           66 AKVSKGQAPPSFTLKDQEGRNVSLSKFKGKPVVVYFYPADETPGCTKQACAFRDSYEKFKKAGAEVIGISGDD-SSSHKA  144 (215)
Q Consensus        66 ~~~~~g~~~P~f~l~~~~g~~~~l~~~~gk~~ll~f~~a~~C~~C~~~~~~l~~l~~~~~~~~v~vv~vs~d~-~~~~~~  144 (215)
                      ..+++|+++|+|++.+.+|+.+++++++||++||+|| ++||++|+.+++.|.+++++++++++.+++|+.|+ .+.+++
T Consensus         6 ~~~~~g~~~p~~~l~~~~g~~~~l~~~~gk~vlv~f~-~~~C~~C~~~~~~l~~l~~~~~~~~v~~v~v~~d~~~~~~~~   84 (165)
T 3or5_A            6 QADARPTPAPSFSGVTVDGKPFSSASLKGKAYIVNFF-ATWCPPCRSEIPDMVQVQKTWASRGFTFVGIAVNEQLPNVKN   84 (165)
T ss_dssp             -CCCCCCBCCCCEEECTTSCEEEGGGGTTCEEEEEEE-CTTSHHHHHHHHHHHHHHHHHTTTTEEEEEEECSCCHHHHHH
T ss_pred             hhhcCCCCCCCceeeCCCCCEechhHcCCCEEEEEEE-cCcCHHHHHHHHHHHHHHHHhccCCeEEEEEECCCCHHHHHH
Confidence            3467899999999999999999999999999999999 99999999999999999999998899999999876 788999


Q ss_pred             HHHHcCCCeEEEEcCChhHHHHh------CCCccCCCCCCccEEEEEcCCCcEEEEEeCCCCCCccHHHHHHHH
Q 028030          145 FAKKYRLPYTLLSDEGNKVRKEW------GVPADFFGSLPGRQTYILDKNGVVQLIYNNQFQPEKHIDETLKFL  212 (215)
Q Consensus       145 ~~~~~~~~~~~~~d~~~~~~~~~------g~~~~~~g~~p~~~~~lid~~G~v~~~~~g~~~~~~~~~~il~~l  212 (215)
                      |+++++++|+++.|.. ++.+.|      ++..     +|  +++|||++|+|+..+.|....+...+.+.++|
T Consensus        85 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~i~~-----~P--~~~lid~~G~i~~~~~g~~~~~~l~~~l~~~l  150 (165)
T 3or5_A           85 YMKTQGIIYPVMMATP-ELIRAFNGYIDGGITG-----IP--TSFVIDASGNVSGVIVGPRSKADFDRIVKMAL  150 (165)
T ss_dssp             HHHHHTCCSCEEECCH-HHHHHHHTTSTTCSCS-----SS--EEEEECTTSBEEEEECSCCCHHHHHHHHHHHH
T ss_pred             HHHHcCCCCceEecCH-HHHHHHhhhhccCCCC-----CC--eEEEECCCCcEEEEEcCCCCHHHHHHHHHHHH
Confidence            9999999999999876 888888      5554     78  99999999999999988654433333333333

>2ywi_A Hypothetical conserved protein; uncharacterized conserved protein, NPPSFA, national project protein structural and functional analyses; 1.60A {Geobacillus kaustophilus}

Probab=99.95  E-value=2.1e-27  Score=184.37  Aligned_cols=123  Identities=21%  Similarity=0.361  Sum_probs=115.6

Q ss_pred             ccCCCCCCCCCeEEe-CCCCCeeecCCcCCCc-EEEEEEcCCCChhhHHHHHHHHHHHHHHHHcCcEEEEEeC-------
Q 028030           66 AKVSKGQAPPSFTLK-DQEGRNVSLSKFKGKP-VVVYFYPADETPGCTKQACAFRDSYEKFKKAGAEVIGISG-------  136 (215)
Q Consensus        66 ~~~~~g~~~P~f~l~-~~~g~~~~l~~~~gk~-~ll~f~~a~~C~~C~~~~~~l~~l~~~~~~~~v~vv~vs~-------  136 (215)
                      ..+++|+++|+|++. +.+|+.+++++++||+ +||+|| ++||++|+.+++.|++++++|++++++|++|+.       
T Consensus        16 ~~~~~g~~~p~f~l~~~~~G~~~~l~~~~gk~~vlv~F~-a~~C~~C~~~~~~l~~l~~~~~~~~v~vv~v~~d~~~~~~   94 (196)
T 2ywi_A           16 NMFPLGKQAPPFALTNVIDGNVVRLEDVKSDAATVIMFI-CNHCPFVKHVQHELVRLANDYMPKGVSFVAINSNDAEQYP   94 (196)
T ss_dssp             CCCCTTCBCCCCEEEETTTCCEEEHHHHCCSSEEEEEEC-CSSCHHHHHHHHHHHHHHHHHGGGTCEEEEEECSCTTTCG
T ss_pred             cCCCcCCcCCceeeeecCCCCEEeHHHhCCCCeEEEEEe-CCCCccHHHHHHHHHHHHHHHHhCCcEEEEEECCcccccc
Confidence            457899999999999 9999999999999996 999999 999999999999999999999988999999998       


Q ss_pred             -CCHHHHHHHHHHcCCCeEEEEcCChhHHHHhCCCccCCCCCCccEEEEEcCCCcEEEEEe
Q 028030          137 -DDSSSHKAFAKKYRLPYTLLSDEGNKVRKEWGVPADFFGSLPGRQTYILDKNGVVQLIYN  196 (215)
Q Consensus       137 -d~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~g~~~~~~g~~p~~~~~lid~~G~v~~~~~  196 (215)
                       |+.+.+++|+++++++|+++.|.+.++.+.|++..     +|  ++||||++|+|++.+.
T Consensus        95 ~d~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~v~~-----~P--~~~lid~~G~i~~~~~  148 (196)
T 2ywi_A           95 EDSPENMKKVAEELGYPFPYLYDETQEVAKAYDAAC-----TP--DFYIFDRDLKCVYRGQ  148 (196)
T ss_dssp             GGSHHHHHHHHHHHTCCSCEEECSSCHHHHHHTCCE-----ES--EEEEEETTCBEEEEEC
T ss_pred             ccCHHHHHHHHHHcCCCceEEECCchHHHHHhCCCC-----CC--eEEEEcCCCeEEEccc
Confidence             57899999999999999999999999999999987     88  9999999999999853

>2vup_A Glutathione peroxidase-like protein; oxidoreductase, trypanothione, dithiol-dependant peroxidase; 2.10A {Trypanosoma brucei}

Probab=99.95  E-value=6.4e-28  Score=187.17  Aligned_cols=143  Identities=16%  Similarity=0.302  Sum_probs=116.7

Q ss_pred             ccCCCCCCCCCeEEeCCCCCeeecCCcCCCcEEEEEEcCCCChhhHHHHHHHHHHHHHHHHcCcEEEEEeCC--------
Q 028030           66 AKVSKGQAPPSFTLKDQEGRNVSLSKFKGKPVVVYFYPADETPGCTKQACAFRDSYEKFKKAGAEVIGISGD--------  137 (215)
Q Consensus        66 ~~~~~g~~~P~f~l~~~~g~~~~l~~~~gk~~ll~f~~a~~C~~C~~~~~~l~~l~~~~~~~~v~vv~vs~d--------  137 (215)
                      ..++.|+++|+|+++|.+|+.+++++++||++||+|| ++||++|+.+++.|++++++|+++|++||+|+.|        
T Consensus        20 s~~~~~~~~p~f~l~~~~G~~~~l~~~~Gk~vll~F~-atwC~~C~~~~~~l~~l~~~~~~~~v~vv~vs~d~~~~~~~~   98 (190)
T 2vup_A           20 SHMSAASSIFDFEVLDADHKPYNLVQHKGSPLLIYNV-ASKCGYTKGGYETATTLYNKYKSQGFTVLAFPCNQFGGQEPG   98 (190)
T ss_dssp             ----CCCSGGGSCCBBTTSSBCCGGGGTTSCEEEEEE-CSSSTTHHHHHHHHHHHHHHHGGGTCEEEEEECCCSTTCCCS
T ss_pred             ccCCCCCcccCeEEEcCCCCEEEHHHcCCCEEEEEEe-cCCCCccHHHHHHHHHHHHHHhcCCeEEEEEEcCccCCCCCC
Confidence            4577899999999999999999999999999999999 9999999999999999999999989999999987        


Q ss_pred             CHHHHHHHH-HHcCCCeEEEE--cCChhH----HH-----HhCCCccCCCCCC----ccEEEEEcCCCcEEEEEeCCCCC
Q 028030          138 DSSSHKAFA-KKYRLPYTLLS--DEGNKV----RK-----EWGVPADFFGSLP----GRQTYILDKNGVVQLIYNNQFQP  201 (215)
Q Consensus       138 ~~~~~~~~~-~~~~~~~~~~~--d~~~~~----~~-----~~g~~~~~~g~~p----~~~~~lid~~G~v~~~~~g~~~~  201 (215)
                      +++.+++|+ ++++++|+++.  |.++.+    ++     .|++..     +|    ++++||||++|+|++.+.|..+.
T Consensus        99 ~~~~~~~~~~~~~~~~~p~l~~~D~~~~~~~~~~~~l~~~~~~v~~-----~P~i~~~~~~~lid~~G~i~~~~~g~~~~  173 (190)
T 2vup_A           99 NEEEIKEFVCTKFKAEFPIMAKINVNGENAHPLYEYMKKTKPGILK-----TKAIKWNFTSFLIDRDGVPVERFSPGASV  173 (190)
T ss_dssp             CHHHHHHHHHHHHCCCSCBBCCCBSSSTTBCHHHHHHHHHSCCGGG-----CCSCCSTTCEEEECTTSCEEEEECTTCCH
T ss_pred             CHHHHHHHHHHhcCCCeEEEeecccCcccccHHHHHHHhhcCCcCC-----CccccccceEEEECCCCcEEEEECCCCCH
Confidence            678999999 89999999986  555443    21     235543     33    23899999999999999986655


Q ss_pred             CccHHHHHHHHhc
Q 028030          202 EKHIDETLKFLQS  214 (215)
Q Consensus       202 ~~~~~~il~~l~~  214 (215)
                      +...+.+.++|++
T Consensus       174 ~~l~~~i~~ll~~  186 (190)
T 2vup_A          174 KDIEKKLIPLLES  186 (190)
T ss_dssp             HHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHhh
Confidence            5555555555543

>2obi_A PHGPX, GPX-4, phospholipid hydroperoxide glutathione peroxidase (GPX4); human GPX4, selenoprotein, thioredoxin-fold, anti-oxidatve defense system; 1.55A {Homo sapiens}

Probab=99.95  E-value=9.4e-28  Score=185.01  Aligned_cols=133  Identities=20%  Similarity=0.289  Sum_probs=111.9

Q ss_pred             ccCCCCCCCCCeEEeCCCCCeeecCCcCCCcEEEEEEcCCCChhhHHHHHHHHHHHHHHHHcCcEEEEEeCC--------
Q 028030           66 AKVSKGQAPPSFTLKDQEGRNVSLSKFKGKPVVVYFYPADETPGCTKQACAFRDSYEKFKKAGAEVIGISGD--------  137 (215)
Q Consensus        66 ~~~~~g~~~P~f~l~~~~g~~~~l~~~~gk~~ll~f~~a~~C~~C~~~~~~l~~l~~~~~~~~v~vv~vs~d--------  137 (215)
                      ..+++|+++|+|++++.+|+.+++++++||++||+|| ++||++|+.+++.|++++++|++++++||+|+.|        
T Consensus        19 ~~~~~g~~~p~f~l~~~~G~~~~l~~~~gk~vll~F~-atwC~~C~~~~~~l~~l~~~~~~~~v~vv~vs~d~~~~~e~~   97 (183)
T 2obi_A           19 DDWRCARSMHEFSAKDIDGHMVNLDKYRGFVCIVTNV-ASQCGKTEVNYTQLVDLHARYAECGLRILAFPCNQFGKQEPG   97 (183)
T ss_dssp             CCGGGCCSGGGCEEEBTTSCEEEGGGGTTSEEEEEEE-CSSSTTHHHHHHHHHHHHHHHGGGTEEEEEEECCCSTTCCCS
T ss_pred             cCCcccCcccceEEEcCCCCEeeHHHcCCCEEEEEEe-CCCCCCcHHHHHHHHHHHHHHhcCCeEEEEEECCCCCCCCCC
Confidence            4568999999999999999999999999999999999 9999999999999999999999989999999975        


Q ss_pred             CHHHHHHHHHHcCCCeEEEE--cCChhH----HHHh-------CCCccCCCCCCccEEEEEcCCCcEEEEEeCCCCC
Q 028030          138 DSSSHKAFAKKYRLPYTLLS--DEGNKV----RKEW-------GVPADFFGSLPGRQTYILDKNGVVQLIYNNQFQP  201 (215)
Q Consensus       138 ~~~~~~~~~~~~~~~~~~~~--d~~~~~----~~~~-------g~~~~~~g~~p~~~~~lid~~G~v~~~~~g~~~~  201 (215)
                      +++++++|+++++++|+++.  |.++..    ++.+       |+.......+|  ++||||++|+|++.+.|..+.
T Consensus        98 ~~~~~~~~~~~~~~~~p~~~~~d~~~~~~~~~~~~l~~~~~~~g~~~~~i~~~P--~~~lid~~G~i~~~~~g~~~~  172 (183)
T 2obi_A           98 SNEEIKEFAAGYNVKFDMFSKICVNGDDAHPLWKWMKIQPKGKGILGNAIKWNF--TKFLIDKNGCVVKRYGPMEEP  172 (183)
T ss_dssp             CHHHHHHHHHTTTCCSEEBCCCCCSSTTSCHHHHHHHTSTTTCCSSSSSCCSTT--CEEEECTTSCEEEEECTTSCT
T ss_pred             CHHHHHHHHHHcCCCceEEeeeccCCcchhHHHHHhhccCCCCCcccccccccc--eEEEECCCCCEEEEeCCCCCH
Confidence            57899999999999999986  665543    3322       43221111246  999999999999999885443

>2cvb_A Probable thiol-disulfide isomerase/thioredoxin; redox protein, structural genomics, riken struc genomics/proteomics initiative, RSGI; 1.80A {Thermus thermophilus} SCOP: c.47.1.10 PDB: 2ywo_A

Probab=99.95  E-value=3.2e-27  Score=182.44  Aligned_cols=120  Identities=19%  Similarity=0.329  Sum_probs=114.1

Q ss_pred             ccCCCCCCCCCeEEeCCCCCeeecCCcCCCcEEEEEEcCCCChhhHHHHHHHHHHHHHHHHcCcEEEEEeC--------C
Q 028030           66 AKVSKGQAPPSFTLKDQEGRNVSLSKFKGKPVVVYFYPADETPGCTKQACAFRDSYEKFKKAGAEVIGISG--------D  137 (215)
Q Consensus        66 ~~~~~g~~~P~f~l~~~~g~~~~l~~~~gk~~ll~f~~a~~C~~C~~~~~~l~~l~~~~~~~~v~vv~vs~--------d  137 (215)
                      ..+++|+++|+|++.|.+|+.+++++++||++||+|| ++||++|+.+++.|++++++|+++ ++||+|+.        |
T Consensus         5 ~~~~~g~~~p~f~l~~~~G~~~~l~~~~gk~vlv~F~-a~~C~~C~~~~~~l~~l~~~~~~~-~~~v~v~~d~~~~~~~d   82 (188)
T 2cvb_A            5 PELPLESPLIDAELPDPRGGRYRLSQFHEPLLAVVFM-CNHCPYVKGSIGELVALAERYRGK-VAFVGINANDYEKYPED   82 (188)
T ss_dssp             CCCCTTCBCCCCEEECTTSCEEEGGGCCSSEEEEEEE-CSSCHHHHTTHHHHHHHHHHTTTT-EEEEEEECCCTTTCGGG
T ss_pred             CcCCCCCCCCCceeecCCCCEEeHHHhCCCEEEEEEE-CCCCccHHHHHHHHHHHHHHhhcC-eEEEEEEcCcccccccc
Confidence            4578999999999999999999999999999999999 999999999999999999999987 99999998        5


Q ss_pred             CHHHHHHHHHHcCCCeEEEEcCChhHHHHhCCCccCCCCCCccEEEEEcCCCcEEEE
Q 028030          138 DSSSHKAFAKKYRLPYTLLSDEGNKVRKEWGVPADFFGSLPGRQTYILDKNGVVQLI  194 (215)
Q Consensus       138 ~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~g~~~~~~g~~p~~~~~lid~~G~v~~~  194 (215)
                      +.+.+++|+++++++|+++.|.++++.+.|++..     +|  ++||||++|+|++.
T Consensus        83 ~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~v~~-----~P--~~~lid~~G~i~~~  132 (188)
T 2cvb_A           83 APEKMAAFAEEHGIFFPYLLDETQEVAKAYRALR-----TP--EVFLFDERRLLRYH  132 (188)
T ss_dssp             SHHHHHHHHHHHTCCSCEEECSSSHHHHHTTCCE-----ES--EEEEECTTCBEEEE
T ss_pred             CHHHHHHHHHHhCCCceEEECCcchHHHHcCCCC-----CC--eEEEECCCCcEEEE
Confidence            7789999999999999999999999999999987     88  99999999999988

>3fkf_A Thiol-disulfide oxidoreductase; structural genomics, PSI-2, structure initiative, midwest center for structural genomic oxidoreductase; 2.20A {Bacteroides fragilis}

Probab=99.95  E-value=2.1e-27  Score=175.67  Aligned_cols=123  Identities=22%  Similarity=0.379  Sum_probs=114.2

Q ss_pred             ccCCCCCCCCCeEEeCCCCCeeecC--CcCCCcEEEEEEcCCCChhhHHHHHHHHHHHHHH-HHcCcEEEEEeCCC-HHH
Q 028030           66 AKVSKGQAPPSFTLKDQEGRNVSLS--KFKGKPVVVYFYPADETPGCTKQACAFRDSYEKF-KKAGAEVIGISGDD-SSS  141 (215)
Q Consensus        66 ~~~~~g~~~P~f~l~~~~g~~~~l~--~~~gk~~ll~f~~a~~C~~C~~~~~~l~~l~~~~-~~~~v~vv~vs~d~-~~~  141 (215)
                      ..+++|+++|+|++.+.+|+.++++  +++||++||+|| ++||++|+.+++.|.++++++ +++|+.+++|+.|. .+.
T Consensus         3 ~~~~~g~~~p~~~l~~~~g~~~~l~~~~~~gk~vll~F~-~~~C~~C~~~~~~l~~l~~~~~~~~~~~~v~v~~d~~~~~   81 (148)
T 3fkf_A            3 AKVTVGKSAPYFSLPNEKGEKLSRSAERFRNRYLLLNFW-ASWCDPQPEANAELKRLNKEYKKNKNFAMLGISLDIDREA   81 (148)
T ss_dssp             --CCTTSBCCCCCEEBTTSCEECTTSTTTTTSEEEEEEE-CGGGCCCHHHHHHHHHHHHHTTTCTTEEEEEEECCSCHHH
T ss_pred             ccccCCCcCCCeEeeCCCCCEEeccccccCCcEEEEEEE-CCCCHHHHHHhHHHHHHHHHhcCCCCeEEEEEECCCCHHH
Confidence            4678999999999999999999999  999999999999 999999999999999999999 77789999999974 579


Q ss_pred             HHHHHHHcCCCeEEEEcC---ChhHHHHhCCCccCCCCCCccEEEEEcCCCcEEEEEe
Q 028030          142 HKAFAKKYRLPYTLLSDE---GNKVRKEWGVPADFFGSLPGRQTYILDKNGVVQLIYN  196 (215)
Q Consensus       142 ~~~~~~~~~~~~~~~~d~---~~~~~~~~g~~~~~~g~~p~~~~~lid~~G~v~~~~~  196 (215)
                      +++|+++++++|+++.|.   +..+.+.||+..     +|  ++++||++|+|++.+.
T Consensus        82 ~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~v~~-----~P--~~~lid~~G~i~~~~~  132 (148)
T 3fkf_A           82 WETAIKKDTLSWDQVCDFTGLSSETAKQYAILT-----LP--TNILLSPTGKILARDI  132 (148)
T ss_dssp             HHHHHHHTTCCSEEECCSCGGGCHHHHHTTCCS-----SS--EEEEECTTSBEEEESC
T ss_pred             HHHHHHHcCCCceEEEccCCcchHHHHhcCCCC-----cC--EEEEECCCCeEEEecC
Confidence            999999999999999988   679999999997     88  9999999999998876

>3erw_A Sporulation thiol-disulfide oxidoreductase A; thioredoxin-like fold, RESA-like fold, dithiol, STOA, redox-active center; 2.50A {Bacillus subtilis} SCOP: c.47.1.0

Probab=99.95  E-value=7.6e-27  Score=171.87  Aligned_cols=125  Identities=19%  Similarity=0.447  Sum_probs=114.3

Q ss_pred             ccCCCCCCCCCeEEeCCCCCeeecCCcCCCcEEEEEEcCCCChhhHHHHHHHHHHHHHHHHcCcEEEEEeCC----CHHH
Q 028030           66 AKVSKGQAPPSFTLKDQEGRNVSLSKFKGKPVVVYFYPADETPGCTKQACAFRDSYEKFKKAGAEVIGISGD----DSSS  141 (215)
Q Consensus        66 ~~~~~g~~~P~f~l~~~~g~~~~l~~~~gk~~ll~f~~a~~C~~C~~~~~~l~~l~~~~~~~~v~vv~vs~d----~~~~  141 (215)
                      ..+.+|+++|+|++.+.+|+.+++++ +||++||+|| ++||++|+.+++.|.++++++++.++.+++|+.|    +.+.
T Consensus         7 ~~~~~g~~~p~~~l~~~~g~~~~l~~-~gk~~ll~f~-~~~C~~C~~~~~~l~~~~~~~~~~~~~~v~v~~d~~~~~~~~   84 (145)
T 3erw_A            7 AEEKQPAVPAVFLMKTIEGEDISIPN-KGQKTILHFW-TSWCPPCKKELPQFQSFYDAHPSDSVKLVTVNLVNSEQNQQV   84 (145)
T ss_dssp             -----CCSCCEEEEECTTSCEEEESC-TTSEEEEEEE-CSSCHHHHHHHHHHHHHHHHCCCSSEEEEEEECGGGSSCHHH
T ss_pred             ccccCCCcCCCceeecCCCCEEeHHH-CCCEEEEEEE-CCCCHHHHHHHHHHHHHHHHcCCCCEEEEEEEccCCcCCHHH
Confidence            45689999999999999999999999 9999999999 9999999999999999999998778999999985    7799


Q ss_pred             HHHHHHHcCCCeEEEEcCChhHHHHhCCCccCCCCCCccEEEEEcCCCcEEEEEeCCC
Q 028030          142 HKAFAKKYRLPYTLLSDEGNKVRKEWGVPADFFGSLPGRQTYILDKNGVVQLIYNNQF  199 (215)
Q Consensus       142 ~~~~~~~~~~~~~~~~d~~~~~~~~~g~~~~~~g~~p~~~~~lid~~G~v~~~~~g~~  199 (215)
                      +++|.++++++|+++.|.+..+.+.|++..     +|  +++++|++|+|+..+.|..
T Consensus        85 ~~~~~~~~~~~~~~~~d~~~~~~~~~~v~~-----~P--~~~lid~~G~i~~~~~g~~  135 (145)
T 3erw_A           85 VEDFIKANKLTFPIVLDSKGELMKEYHIIT-----IP--TSFLLNEKGEIEKTKIGPM  135 (145)
T ss_dssp             HHHHHHHTTCCSCEEECSSSHHHHHTTCCE-----ES--EEEEECTTCCEEEEEESCC
T ss_pred             HHHHHHHcCCceeEEEcCchhHHHhcCcCc-----cC--eEEEEcCCCcEEEEEcCCc
Confidence            999999999999999999999999999987     88  9999999999999998854

>2f8a_A Glutathione peroxidase 1; thioredoxin fold, structural genomics, structural genomics consortium, SGC, oxidoreductase; 1.50A {Homo sapiens} SCOP: c.47.1.10 PDB: 1gp1_A 2he3_A

Probab=99.95  E-value=4.1e-27  Score=185.52  Aligned_cols=144  Identities=15%  Similarity=0.169  Sum_probs=112.6

Q ss_pred             CCCCCCCCeEEeCCC-CCeeecCCcCCCcEEEEEEcCCCChhhHHHHHHHHHHHHHHHHcCcEEEEEeCC--------CH
Q 028030           69 SKGQAPPSFTLKDQE-GRNVSLSKFKGKPVVVYFYPADETPGCTKQACAFRDSYEKFKKAGAEVIGISGD--------DS  139 (215)
Q Consensus        69 ~~g~~~P~f~l~~~~-g~~~~l~~~~gk~~ll~f~~a~~C~~C~~~~~~l~~l~~~~~~~~v~vv~vs~d--------~~  139 (215)
                      ..++.+|+|++++.+ |+.+++++++||++||+|| ++||++|+.++|.|++++++|+++|++||+|+.|        ++
T Consensus        21 ~~~~~~p~f~l~~~~~G~~v~l~~~~Gk~vlv~Fw-atwC~~C~~e~p~l~~l~~~~~~~g~~vv~v~~d~~~~~e~d~~   99 (208)
T 2f8a_A           21 QSMQSVYAFSARPLAGGEPVSLGSLRGKVLLIENV-ASLGGTTVRDYTQMNELQRRLGPRGLVVLGFPCNQFGHQENAKN   99 (208)
T ss_dssp             -CCCCGGGCEECBTTCSSCEEGGGGTTSEEEEEEE-CSSSTTHHHHHHHHHHHHHHHGGGTEEEEEEECCCSTTTTCSCH
T ss_pred             hhcCccCceEeeeCCCCCCccHHHcCCCEEEEEEE-CCCCccHHHHHHHHHHHHHHccCCCeEEEEEECCcccccCCCCH
Confidence            456889999999999 9999999999999999999 9999999999999999999999989999999986        46


Q ss_pred             HHHHHHHH------HcCCCeEEEEcC--Chh----HHH----HhCC--------Ccc-------C---CCCCCccEEEEE
Q 028030          140 SSHKAFAK------KYRLPYTLLSDE--GNK----VRK----EWGV--------PAD-------F---FGSLPGRQTYIL  185 (215)
Q Consensus       140 ~~~~~~~~------~~~~~~~~~~d~--~~~----~~~----~~g~--------~~~-------~---~g~~p~~~~~li  185 (215)
                      +++++|++      +++++|+++.|.  ++.    ++.    .++.        ..+       .   .+...+|++|||
T Consensus       100 ~~i~~f~~~~~~~~~~~~~fp~l~d~d~~g~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~p~tflI  179 (208)
T 2f8a_A          100 EEILNSLKYVRPGGGFEPNFMLFEKCEVNGAGAHPLFAFLREALPAPSDDATALMTDPKLITWSPVCRNDVAWNFEKFLV  179 (208)
T ss_dssp             HHHHHHHHHTSSCTTCCCSSEEBCCCCCSSTTCCHHHHHHHHHSCSCTTCSSCCCSSGGGCCSSSCCTTCCCSTTCEEEE
T ss_pred             HHHHHHHHhcccccccccceEEEEEeecCCCCccHHHHHHHhcCCCccccchhhccccccccccccccCccccCceEEEE
Confidence            88999998      899999998642  222    222    2221        000       0   011112399999


Q ss_pred             cCCCcEEEEEeCCCCCCccHHHHHHHHh
Q 028030          186 DKNGVVQLIYNNQFQPEKHIDETLKFLQ  213 (215)
Q Consensus       186 d~~G~v~~~~~g~~~~~~~~~~il~~l~  213 (215)
                      |++|+|+.++.|..+.+...+.|.++|+
T Consensus       180 D~~G~i~~~~~g~~~~~~l~~~I~~ll~  207 (208)
T 2f8a_A          180 GPDGVPLRRYSRRFQTIDIEPDIEALLS  207 (208)
T ss_dssp             CTTSCEEEEECTTSCGGGGHHHHHHHHC
T ss_pred             cCCCcEEEEeCCCCCHHHHHHHHHHHhh
Confidence            9999999999987766665555555554

>2b5x_A YKUV protein, TRXY; thioredoxin-like, oxidoreductase; NMR {Bacillus subtilis} SCOP: c.47.1.10 PDB: 2b5y_A

Probab=99.95  E-value=4.9e-27  Score=173.50  Aligned_cols=137  Identities=15%  Similarity=0.207  Sum_probs=121.5

Q ss_pred             CCCCCCCCCeEE--eCCCCCeeecCCcCCCcEEEEEEcCCCChhhHHHHHHHHHHHHHHHHcCcEEEEEeCC------CH
Q 028030           68 VSKGQAPPSFTL--KDQEGRNVSLSKFKGKPVVVYFYPADETPGCTKQACAFRDSYEKFKKAGAEVIGISGD------DS  139 (215)
Q Consensus        68 ~~~g~~~P~f~l--~~~~g~~~~l~~~~gk~~ll~f~~a~~C~~C~~~~~~l~~l~~~~~~~~v~vv~vs~d------~~  139 (215)
                      +++|+++|+|++  .+.+|+.+++++++||++||+|| ++||++|+.+++.|.+++++++++ +.+++|+.|      +.
T Consensus         1 l~~g~~~P~f~~~~~~~~g~~~~~~~~~gk~~lv~f~-~~~C~~C~~~~~~l~~l~~~~~~~-~~~~~v~~~~~~~~~~~   78 (148)
T 2b5x_A            1 MKLRQPMPELTGEKAWLNGEVTREQLIGEKPTLIHFW-SISCHLCKEAMPQVNEFRDKYQDQ-LNVVAVHMPRSEDDLDP   78 (148)
T ss_dssp             CCTTCBCCCCCCCSEEESCCCCHHHHTTTSCEEEEEE-CTTCHHHHHHHHHHHHHHHHHTTT-SEEEEEECCCSTTTSSH
T ss_pred             CCCCCCCCCCccccccccCcccchhhcCCCEEEEEEE-cCCCHHHHHHhHHHHHHHHHhcCC-cEEEEEEcCCCccccCH
Confidence            468999999999  68999999999999999999999 999999999999999999999877 999999986      67


Q ss_pred             HHHHHHHHHcCCCeEEEEcCChhHHHHhCCCccCCCCCCccEEEEEcCCCcEEEEEeCCCCCCccHHHHHHHHh
Q 028030          140 SSHKAFAKKYRLPYTLLSDEGNKVRKEWGVPADFFGSLPGRQTYILDKNGVVQLIYNNQFQPEKHIDETLKFLQ  213 (215)
Q Consensus       140 ~~~~~~~~~~~~~~~~~~d~~~~~~~~~g~~~~~~g~~p~~~~~lid~~G~v~~~~~g~~~~~~~~~~il~~l~  213 (215)
                      +.+++|+++++++|+++.|.+..+.+.|++..     +|  +++++|++|+|+..+.|..+.+...+.+.++++
T Consensus        79 ~~~~~~~~~~~~~~~~~~d~~~~~~~~~~v~~-----~P--~~~lid~~G~i~~~~~g~~~~~~l~~~l~~~l~  145 (148)
T 2b5x_A           79 GKIKETAAEHDITQPIFVDSDHALTDAFENEY-----VP--AYYVFDKTGQLRHFQAGGSGMKMLEKRVNRVLA  145 (148)
T ss_dssp             HHHHHHHHHTTCCSCEEECSSCHHHHHTCCCC-----SS--EEEEECTTCBEEEEEESCSTTHHHHHHHHHHHT
T ss_pred             HHHHHHHHHcCCCcceEECCchhHHHHhCCCC-----CC--EEEEECCCCcEEEEecCCCCHHHHHHHHHHHHh
Confidence            89999999999999999999999999999987     88  999999999999999886544443344444443

>4f82_A Thioredoxin reductase; structural genomics, niaid, national institute of allergy AN infectious diseases; 1.85A {Burkholderia cenocepacia}

Probab=99.95  E-value=5.9e-27  Score=179.12  Aligned_cols=147  Identities=20%  Similarity=0.317  Sum_probs=125.8

Q ss_pred             ccCCCCCCCCCeEEeCCCC----------CeeecCCc-CCCcEEEEEEcCCCChhhHH-HHHHHHHHHHHHHHcCc-EEE
Q 028030           66 AKVSKGQAPPSFTLKDQEG----------RNVSLSKF-KGKPVVVYFYPADETPGCTK-QACAFRDSYEKFKKAGA-EVI  132 (215)
Q Consensus        66 ~~~~~g~~~P~f~l~~~~g----------~~~~l~~~-~gk~~ll~f~~a~~C~~C~~-~~~~l~~l~~~~~~~~v-~vv  132 (215)
                      -.+++|+++|+.++....+          ++++|+++ +||++||+|||++||++|.. +++.|++++++|+++|+ +|+
T Consensus         8 ~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~vsLsd~~~Gk~vVL~fyP~~~tp~Ct~~El~~f~~~~~ef~~~g~d~Vi   87 (176)
T 4f82_A            8 HMIQVGDALPDAQLFEFIDDAREGCTLGPNACSVRDQVAGKRVVIFGLPGAFTPTCSAQHVPGYVEHAEQLRAAGIDEIW   87 (176)
T ss_dssp             CCCCTTCBCCCCEEEEEECSCCTTCCSEEEEEEHHHHHTTCEEEEEEESCTTCHHHHHTHHHHHHHHHHHHHHTTCCEEE
T ss_pred             hhhhcCCcCCceEEEEecccccccccCCceEEeHHHHhCCCeEEEEEEcCCCCCCCCHHHHHHHHHHHHHHHhCCCCEEE
Confidence            3578999999988875433          77899997 99999998888999999999 99999999999999999 999


Q ss_pred             EEeCCCHHHHHHHHHHcCCC--eEEEEcCChhHHHHhCCCccC--CC-CC-CccEEEEEcCCCcEEEEEeCCCC--CCcc
Q 028030          133 GISGDDSSSHKAFAKKYRLP--YTLLSDEGNKVRKEWGVPADF--FG-SL-PGRQTYILDKNGVVQLIYNNQFQ--PEKH  204 (215)
Q Consensus       133 ~vs~d~~~~~~~~~~~~~~~--~~~~~d~~~~~~~~~g~~~~~--~g-~~-p~~~~~lid~~G~v~~~~~g~~~--~~~~  204 (215)
                      +||.|+++.+++|.++++++  |+++.|+++++.++||+..+.  .| .+ ..|.+||| ++|+|++.+.+...  ....
T Consensus        88 gIS~D~~~~~~~f~~~~~l~~~f~lLsD~~~~va~ayGv~~~~~~~G~g~~s~R~tfII-~dG~I~~~~~~~~~~~~~~~  166 (176)
T 4f82_A           88 CVSVNDAFVMGAWGRDLHTAGKVRMMADGSAAFTHALGLTQDLSARGMGIRSLRYAMVI-DGGVVKTLAVEAPGKFEVSD  166 (176)
T ss_dssp             EEESSCHHHHHHHHHHTTCTTTSEEEECTTCHHHHHHTCEEECGGGTCCEEECCEEEEE-ETTEEEEEEECCTTCCSSSS
T ss_pred             EEeCCCHHHHHHHHHHhCCCCCceEEEcCchHHHHHhCCCccccccCCCcccccEEEEE-cCCEEEEEEEcCCCCcchhh
Confidence            99999999999999999998  999999999999999997542  33 12 24589999 99999999886522  2256


Q ss_pred             HHHHHHHHh
Q 028030          205 IDETLKFLQ  213 (215)
Q Consensus       205 ~~~il~~l~  213 (215)
                      .+++|+.|+
T Consensus       167 a~~vL~~Lk  175 (176)
T 4f82_A          167 AASVLATLT  175 (176)
T ss_dssp             HHHHHHTCC
T ss_pred             HHHHHHHhh
Confidence            888888875

>2p31_A CL683, glutathione peroxidase 7; thioredoxin fold, NPGPX, phospholipid hydroperoxidase, struc genomics, structural genomics consortium, SGC; 2.00A {Homo sapiens}

Probab=99.95  E-value=4.7e-28  Score=186.55  Aligned_cols=129  Identities=16%  Similarity=0.224  Sum_probs=104.6

Q ss_pred             ccCCCCCCCCCeEEeCCCCCeeecCCcCCCcEEEEEEcCCCChhhHHHHHHHHHHHHHHHHcCcEEEEEeCC--------
Q 028030           66 AKVSKGQAPPSFTLKDQEGRNVSLSKFKGKPVVVYFYPADETPGCTKQACAFRDSYEKFKKAGAEVIGISGD--------  137 (215)
Q Consensus        66 ~~~~~g~~~P~f~l~~~~g~~~~l~~~~gk~~ll~f~~a~~C~~C~~~~~~l~~l~~~~~~~~v~vv~vs~d--------  137 (215)
                      ..+++|+++|+|++++.+|+++++++++||++||+|| ++||++|+.+++.|++++++|+++|++||+|+.|        
T Consensus        21 ~~~~~g~~~p~f~l~~~~G~~~~l~~~~Gk~vlv~F~-atwC~~C~~~~p~l~~l~~~~~~~~v~vv~vs~d~~~~~e~~   99 (181)
T 2p31_A           21 QSMQQEQDFYDFKAVNIRGKLVSLEKYRGSVSLVVNV-ASECGFTDQHYRALQQLQRDLGPHHFNVLAFPCNQFGQQEPD   99 (181)
T ss_dssp             ------CCGGGCEEEBTTSCEEEGGGGTTSEEEEEEE-CSSSTTHHHHHHHHHHHHHHHGGGTEEEEEEECCCSTTCCCS
T ss_pred             CcCCcCCccCceEeecCCCCEecHHHcCCCEEEEEEe-ccCCCCcHHHHHHHHHHHHHhhcCCEEEEEEECcCCCCCCCC
Confidence            4578999999999999999999999999999999999 9999999999999999999999989999999986        


Q ss_pred             CHHHHHHHHHH-cCCCeEEEE--cCChhHHH---HhCCCccCCCCCC-----ccEEEEEcCCCcEEEEEeCCCC
Q 028030          138 DSSSHKAFAKK-YRLPYTLLS--DEGNKVRK---EWGVPADFFGSLP-----GRQTYILDKNGVVQLIYNNQFQ  200 (215)
Q Consensus       138 ~~~~~~~~~~~-~~~~~~~~~--d~~~~~~~---~~g~~~~~~g~~p-----~~~~~lid~~G~v~~~~~g~~~  200 (215)
                      +.+.+++|+++ ++++|+++.  |.++....   .|++..     +|     ++++||||++|+|++.+.|..+
T Consensus       100 ~~~~~~~~~~~~~~~~~p~~~~~d~~g~~~~~~~~~~~~~-----~P~~~~~~~~~~lid~~G~i~~~~~g~~~  168 (181)
T 2p31_A          100 SNKEIESFARRTYSVSFPMFSKIAVTGTGAHPAFKYLAQT-----SGKEPTWNFWKYLVAPDGKVVGAWDPTVS  168 (181)
T ss_dssp             CHHHHHHHHHHHHCCCSCBBCCCCCSSTTSCHHHHHHHHH-----HSCCCCSTTCEEEECTTSCEEEEECTTSC
T ss_pred             CHHHHHHHHHhhcCCCceeEeecccCCccchhhhhhhhhc-----CCCccccceeEEEEcCCCCEEEEeCCCCC
Confidence            57899999999 999999985  44433221   232322     22     2279999999999999988543

>2pwj_A Mitochondrial peroxiredoxin; alpha and beta protein, oxidoreductase; 2.80A {Pisum sativum}

Probab=99.95  E-value=4e-27  Score=180.09  Aligned_cols=141  Identities=19%  Similarity=0.271  Sum_probs=116.8

Q ss_pred             CCCCCCCCCeEEeCC----CC-----CeeecCCc-CCCcEEE-EEEcCCCChhhHHH-HHHHHHHHHHHHHcCcE-EEEE
Q 028030           68 VSKGQAPPSFTLKDQ----EG-----RNVSLSKF-KGKPVVV-YFYPADETPGCTKQ-ACAFRDSYEKFKKAGAE-VIGI  134 (215)
Q Consensus        68 ~~~g~~~P~f~l~~~----~g-----~~~~l~~~-~gk~~ll-~f~~a~~C~~C~~~-~~~l~~l~~~~~~~~v~-vv~v  134 (215)
                      ..+|+++|+|++++.    +|     +.++++++ +||++|| +|| ++||++|+.+ ++.|++++++|+++|++ |++|
T Consensus         7 ~~~g~~aP~f~l~~~~~~~~G~~~~~~~v~l~~~~~gk~vvl~~~~-a~wcp~C~~eh~p~l~~~~~~~~~~g~~~vv~I   85 (171)
T 2pwj_A            7 TDILSAASNVSLQKARTWDEGVESKFSTTPVNDIFKDKKVVIFGLP-GAYTGVCSSKHVPPYKHNIDKFKAKGVDSVICV   85 (171)
T ss_dssp             ---CCCSSSBCCCSCEECCCSSCTTCCCEEHHHHHTTSEEEEEECS-CTTCTTHHHHTHHHHHHTHHHHHHTTCSEEEEE
T ss_pred             ccccCcCCCeEEecccccccCCccCcceEEHHHHhCCCCEEEEEec-CCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEE
Confidence            456779999999998    57     89999996 9975555 555 9999999999 99999999999999999 9999


Q ss_pred             eCCCHHHHHHHHHHcCC--CeEEEEcCChhHHHHhCCCccCC----CC--CCccEEEEEcCCCcEEEEEeCCCCC---Cc
Q 028030          135 SGDDSSSHKAFAKKYRL--PYTLLSDEGNKVRKEWGVPADFF----GS--LPGRQTYILDKNGVVQLIYNNQFQP---EK  203 (215)
Q Consensus       135 s~d~~~~~~~~~~~~~~--~~~~~~d~~~~~~~~~g~~~~~~----g~--~p~~~~~lid~~G~v~~~~~g~~~~---~~  203 (215)
                      +.|+++.+++|++++++  +|+++.|+++++.+.||+.....    |.  .|  ++++|| +|+|++.+.+....   ..
T Consensus        86 s~d~~~~~~~~~~~~~~~~~fp~l~D~~~~~~~~ygv~~~~~~~~~g~~~~~--~t~~I~-~G~I~~~~~~~~~~~~~~~  162 (171)
T 2pwj_A           86 AINDPYTVNAWAEKIQAKDAIEFYGDFDGSFHKSLELTTDLSAGLLGIRSER--WSAYVV-DGKVKALNVEESPSDVKVS  162 (171)
T ss_dssp             ESSCHHHHHHHHHHTTCTTTSEEEECTTCHHHHHHTCEEECTTTTCCEEECC--EEEEEE-TTEEEEEEECSSTTCCSSS
T ss_pred             eCCCHHHHHHHHHHhCCCCceEEEECCccHHHHHhCCccccccccCCcccce--eEEEEE-CCEEEEEEeecCCCCCccc
Confidence            99999999999999996  79999999999999999974321    21  34  789999 99999999885432   35


Q ss_pred             cHHHHHHHH
Q 028030          204 HIDETLKFL  212 (215)
Q Consensus       204 ~~~~il~~l  212 (215)
                      ..+++|+.|
T Consensus       163 ~~~~il~~l  171 (171)
T 2pwj_A          163 GAETILGQI  171 (171)
T ss_dssp             SHHHHHHHC
T ss_pred             CHHHHHhcC
Confidence            677777654

>2i3y_A Epididymal secretory glutathione peroxidase; thioredoxin fold, epididymal androgen related protein, struc genomics, structural genomics consortium; 2.00A {Homo sapiens}

Probab=99.94  E-value=1.1e-26  Score=183.81  Aligned_cols=144  Identities=13%  Similarity=0.145  Sum_probs=111.3

Q ss_pred             CCCCCCCCeEEeCCC-CCeeecCCcCCCcEEEEEEcCCCChhhHHHHHHHHHHHHHHHHcCcEEEEEeCC--------CH
Q 028030           69 SKGQAPPSFTLKDQE-GRNVSLSKFKGKPVVVYFYPADETPGCTKQACAFRDSYEKFKKAGAEVIGISGD--------DS  139 (215)
Q Consensus        69 ~~g~~~P~f~l~~~~-g~~~~l~~~~gk~~ll~f~~a~~C~~C~~~~~~l~~l~~~~~~~~v~vv~vs~d--------~~  139 (215)
                      ..+..+|+|+++|.+ |+.++|++++||++||+|| ++||++|+ +++.|++++++|+++|++||+|+.|        +.
T Consensus        30 ~~~~~~pdF~l~d~~~G~~v~Lsd~~GKvvll~Fw-At~C~~c~-e~p~L~~l~~~~~~~g~~Vlgvs~d~f~~~e~~~~  107 (215)
T 2i3y_A           30 DEKGTIYDYEAIALNKNEYVSFKQYVGKHILFVNV-ATYCGLTA-QYPELNALQEELKPYGLVVLGFPCNQFGKQEPGDN  107 (215)
T ss_dssp             CCCCCGGGCEEEBSSSSCEEEGGGGTTSEEEEEEE-CSSSGGGG-GHHHHHHHHHHHGGGTEEEEEEECCCSTTCCCSCH
T ss_pred             cccCCcCCcEeeeCCCCCEEcHHHhCCCEEEEEEe-CCCCCChH-hHHHHHHHHHHhccCCeEEEEEEccccCcCCCCCH
Confidence            456789999999999 9999999999999999999 99999999 9999999999999999999999864        56


Q ss_pred             HHHHHHHH------HcCCCeEEEEcC--Chh----HHHHh----C----CCcc----------CCCCCCccEEEEEcCCC
Q 028030          140 SSHKAFAK------KYRLPYTLLSDE--GNK----VRKEW----G----VPAD----------FFGSLPGRQTYILDKNG  189 (215)
Q Consensus       140 ~~~~~~~~------~~~~~~~~~~d~--~~~----~~~~~----g----~~~~----------~~g~~p~~~~~lid~~G  189 (215)
                      +++++|++      +++++||++.|.  ++.    ++..+    .    +.+.          ......+|++||||++|
T Consensus       108 ~~i~~f~~~~~~~~~~~~~fpll~d~d~~g~~~~~~~~~l~~~~~~~~~~~g~~~~~~~~p~~~~~i~~npttfLID~~G  187 (215)
T 2i3y_A          108 KEILPGLKYVRPGGGFVPSFQLFEKGDVNGEKEQKVFSFLKHSCPHPSEILGTFKSISWDPVKVHDIRWNFEKFLVGPDG  187 (215)
T ss_dssp             HHHHHHHHHTSSCTTCCCSSEEBCCCCSSSTTCCHHHHHHHHHSCCSCSCCCCTTTCCSSSCCTTCCCSTTCEEEECTTS
T ss_pred             HHHHHHHHhccchhccCccceeEeeeccCCcccchHHHHHHhhCcccccccccccccccccccccccccCceEEEECCCC
Confidence            88999999      999999998753  222    22211    1    1100          00011124899999999


Q ss_pred             cEEEEEeCCCCCCccHHHHHHHHhc
Q 028030          190 VVQLIYNNQFQPEKHIDETLKFLQS  214 (215)
Q Consensus       190 ~v~~~~~g~~~~~~~~~~il~~l~~  214 (215)
                      +|+.++.|....++..++|.++|++
T Consensus       188 ~vv~~~~g~~~~~~l~~~I~~ll~~  212 (215)
T 2i3y_A          188 IPVMRWSHRATVSSVKTDILAYLKQ  212 (215)
T ss_dssp             CEEEEECTTSCHHHHHHHHHHHGGG
T ss_pred             eEEEEeCCCCCHHHHHHHHHHHHHH
Confidence            9999998866555544555555543

>4eo3_A Bacterioferritin comigratory protein/NADH dehydro; thioredoxin-fold, alpha-beta-aplha sandwich fold, antioxidan oxidoreductase, FMN binding; HET: FMN; 1.65A {Thermotoga maritima}

Probab=99.94  E-value=9.4e-27  Score=194.69  Aligned_cols=135  Identities=27%  Similarity=0.444  Sum_probs=119.1

Q ss_pred             CCCCCeEEeCCCCCeeecCCcCCCcEEEEEEcCCCChhhHHHHHHHHHHHHHHHHcCcEEEEEeCCCHHHHHHHHHHcCC
Q 028030           72 QAPPSFTLKDQEGRNVSLSKFKGKPVVVYFYPADETPGCTKQACAFRDSYEKFKKAGAEVIGISGDDSSSHKAFAKKYRL  151 (215)
Q Consensus        72 ~~~P~f~l~~~~g~~~~l~~~~gk~~ll~f~~a~~C~~C~~~~~~l~~l~~~~~~~~v~vv~vs~d~~~~~~~~~~~~~~  151 (215)
                      .++|+|+++|.+|++++|+|++||++||+|||..||+.|..+++.|++.    ..+|++||+||.|+++.+++|.+++++
T Consensus         2 ak~p~F~l~~~~G~~~~Lsd~~Gk~vvl~F~p~~~tp~C~~e~~~~~~~----~~~~~~v~gis~D~~~~~~~f~~~~~l   77 (322)
T 4eo3_A            2 ARVKHFELLTDEGKTFTHVDLYGKYTILFFFPKAGTSGSTREAVEFSRE----NFEKAQVVGISRDSVEALKRFKEKNDL   77 (322)
T ss_dssp             CBCCCCEEEETTSCEEEGGGTTTSEEEEEECSSTTSHHHHHHHHHHHHS----CCTTEEEEEEESCCHHHHHHHHHHHTC
T ss_pred             CCCCCcEEECCCcCEEeHHHhCCCeEEEEEECCCCCCCCHHHHHHHHHH----hhCCCEEEEEeCCCHHHHHHHHHhhCC
Confidence            3789999999999999999999999999999999999999999888652    224799999999999999999999999


Q ss_pred             CeEEEEcCChhHHHHhCCCccCCCCCCccEEEEEcCCCcEEEEEeCCCCCCccHHHHHHHHhc
Q 028030          152 PYTLLSDEGNKVRKEWGVPADFFGSLPGRQTYILDKNGVVQLIYNNQFQPEKHIDETLKFLQS  214 (215)
Q Consensus       152 ~~~~~~d~~~~~~~~~g~~~~~~g~~p~~~~~lid~~G~v~~~~~g~~~~~~~~~~il~~l~~  214 (215)
                      +||++.|+++++.+.||+... ...+|  .+||||++|+|++.|.+ ..+..+.+++|+.|++
T Consensus        78 ~fp~l~D~~~~v~~~ygv~~~-~~~~r--~tfiId~~G~i~~~~~~-v~~~~h~~~~l~~~~~  136 (322)
T 4eo3_A           78 KVTLLSDPEGILHEFFNVLEN-GKTVR--STFLIDRWGFVRKEWRR-VKVEGHVQEVKEALDR  136 (322)
T ss_dssp             CSEEEECTTCHHHHHTTCEET-TEECC--EEEEECTTSBEEEEEES-CCSTTHHHHHHHHHHH
T ss_pred             ceEEEEcCchHHHHhcCCCCC-CcCcc--EEEEECCCCEEEEEEeC-CCccccHHHHHHHHhh
Confidence            999999999999999999642 11245  99999999999999977 4667788999988864

>2xhf_A Peroxiredoxin 5; oxidoreductase, antioxidant enzymes; 1.30A {Alvinella pompejana}

Probab=99.94  E-value=1.1e-26  Score=177.31  Aligned_cols=147  Identities=14%  Similarity=0.212  Sum_probs=123.4

Q ss_pred             ccCCCCCCCCCeEEeCCCC-CeeecCCc-CCCcEEEEEEcCCCChhhHHHHHHHHHHHHHHHHcCcE-EEEEeCCCHHHH
Q 028030           66 AKVSKGQAPPSFTLKDQEG-RNVSLSKF-KGKPVVVYFYPADETPGCTKQACAFRDSYEKFKKAGAE-VIGISGDDSSSH  142 (215)
Q Consensus        66 ~~~~~g~~~P~f~l~~~~g-~~~~l~~~-~gk~~ll~f~~a~~C~~C~~~~~~l~~l~~~~~~~~v~-vv~vs~d~~~~~  142 (215)
                      .++++|+++|+|++.+.++ ++++|+++ +||++||+|||..||+.|..+++.+++.+++++++|++ |++||.|+++.+
T Consensus        12 ~~~~vGd~aPdf~l~~~g~~~~v~L~d~~~gk~vVL~fyP~~fTp~Ct~e~~~f~~~~~ef~~~gv~~VigIS~D~~~~~   91 (171)
T 2xhf_A           12 SPIKVGDIIPDVLVYEDVPSKSFPIHDVFRGRKGILFSVVGAFVPGSNNHIPEYLSLYDKFKEEGYHTIACIAVNDPFVM   91 (171)
T ss_dssp             CCCCTTCBCCCCEEECSSTTCEEETHHHHTTSEEEEEECSCTTCTTTTSSHHHHHHTHHHHHHTTCCEEEEEESSCHHHH
T ss_pred             CcccCcCCCCCeEEecCCCCcEEEhHHHhCCCeEEEEEECCCCCCcCHHHHHHHHHHHHHHHHCCCCEEEEEeCCCHHHH
Confidence            4688999999999994332 89999995 99999999999999999999999999999999999996 999999999999


Q ss_pred             HHHHHHcCC--CeEEEEcCChhHHHHhCCCccC----CCCCCccEEEEEcCCCcEEEEEeCCCCC---CccHHHHHHHHh
Q 028030          143 KAFAKKYRL--PYTLLSDEGNKVRKEWGVPADF----FGSLPGRQTYILDKNGVVQLIYNNQFQP---EKHIDETLKFLQ  213 (215)
Q Consensus       143 ~~~~~~~~~--~~~~~~d~~~~~~~~~g~~~~~----~g~~p~~~~~lid~~G~v~~~~~g~~~~---~~~~~~il~~l~  213 (215)
                      ++|.+++++  +|+++.|+++++.++||+..+.    .|....|.+|||| +|+|++.+......   ....+++|+.++
T Consensus        92 ~~w~~~~~~~~~f~lLSD~~~~~a~ayGv~~~~~~~g~g~~~~R~tfvId-dG~V~~~~v~~~~~~~~~s~a~~vL~~~~  170 (171)
T 2xhf_A           92 AAWGKTVDPEHKIRMLADMHGEFTRALGTELDSSKMLGNNRSRRYAMLID-DNKIRSVSTEPDITGLACLLSIQRQKENK  170 (171)
T ss_dssp             HHHHHHHCTTCCSEEEECTTSHHHHHHTCBCCCHHHHSSCCBCCEEEEEE-TTEEEEEEETTSCSHHHHHHHHHHC----
T ss_pred             HHHHHhcCCCCCeEEEEeCCchHHHHhCCceeccccCCCcceEEEEEEEe-CCEEEEEEEeCCCCcccCCCHHHHHHHhc
Confidence            999999999  8999999999999999998542    1223456899999 99999999864322   234577777765

>3dwv_A Glutathione peroxidase-like protein; alpha beta, 3-layer(ABA) sandwich, glutaredoxin fold, oxidor peroxidase; 1.41A {Trypanosoma brucei} PDB: 2rm5_A 2rm6_A 3e0u_A

Probab=99.94  E-value=4.9e-28  Score=187.46  Aligned_cols=145  Identities=17%  Similarity=0.317  Sum_probs=113.1

Q ss_pred             ccCCCCCCCCCeEEeCCCCCeeecCCcCCCcEEEEEEcCCCChhhHHHHHHHHHHHHHHHHcCcEEEEEeCC--------
Q 028030           66 AKVSKGQAPPSFTLKDQEGRNVSLSKFKGKPVVVYFYPADETPGCTKQACAFRDSYEKFKKAGAEVIGISGD--------  137 (215)
Q Consensus        66 ~~~~~g~~~P~f~l~~~~g~~~~l~~~~gk~~ll~f~~a~~C~~C~~~~~~l~~l~~~~~~~~v~vv~vs~d--------  137 (215)
                      ..+..+.++|+|+++|.+|+.+++++++||++||+|| ++||++|..++|.|++++++|+++|++||+|++|        
T Consensus        18 ~~~~~~~~~p~f~l~d~~G~~~~l~~~~Gk~vlv~F~-atwC~~C~~~~p~l~~l~~~~~~~~~~vi~is~d~~~~~e~~   96 (187)
T 3dwv_A           18 KKMSAASSIFDFEVLDADHKPYNLVQHKGSPLLIYNV-ASKCGYTKGGYETATTLYNKYKSQGFTVLAFPSNQFGGQEPG   96 (187)
T ss_dssp             --CTTCCSGGGSCCBBTTSCBCCGGGGTTSCEEEEEE-CCBCSCCTTHHHHHHHHHHHHGGGTCEEEEEEBCCCSSCSSS
T ss_pred             hhhcCCCccCCeEEEcCCCCEeeHHHhCCCEEEEEEe-cCCCCCcHHHHHHHHHHHHHhhhCCeEEEEEECcccCCCCCC
Confidence            4567889999999999999999999999999999999 9999999999999999999999999999999986        


Q ss_pred             CHHHHHHHHH-HcCCCeEEEE--cCChhHHH-Hh--------CCCccCCCCCC-ccEEEEEcCCCcEEEEEeCCCCCCcc
Q 028030          138 DSSSHKAFAK-KYRLPYTLLS--DEGNKVRK-EW--------GVPADFFGSLP-GRQTYILDKNGVVQLIYNNQFQPEKH  204 (215)
Q Consensus       138 ~~~~~~~~~~-~~~~~~~~~~--d~~~~~~~-~~--------g~~~~~~g~~p-~~~~~lid~~G~v~~~~~g~~~~~~~  204 (215)
                      +.+++++|++ .++++|+++.  |.++.... .|        ++.+ . ..+| ++++||||++|+|++.+.|....+..
T Consensus        97 ~~~~~~~~~~~~~~~~~p~~~~~d~~~~~~~~~~~~l~~~~~~~~~-~-~~iP~~~~~~liD~~G~i~~~~~g~~~~~~l  174 (187)
T 3dwv_A           97 NEEEIKEFVCTKFKAEFPIMAKINVNGENAHPLYEYMKKTKPGILA-T-KAIKWNFTSFLIDRDGVPVERFSPGASVKDI  174 (187)
T ss_dssp             BTTHHHHSCCBCCCCSSCBBCCBCCSCC-CCHHHHHHHHHSCCSBS-S-SSCCSTTCEEEECTTSCEEEEECTTCCHHHH
T ss_pred             CHHHHHHHHHhccCCCCceeeccccCCcchhHHHHHHHhhcCCccC-C-CccccceeEEEECCCCCEEEEECCCCCHHHH
Confidence            4688999998 5699999986  54443221 11        2222 0 0133 23899999999999999987655554


Q ss_pred             HHHHHHHHh
Q 028030          205 IDETLKFLQ  213 (215)
Q Consensus       205 ~~~il~~l~  213 (215)
                      .+.+.++|+
T Consensus       175 ~~~i~~lL~  183 (187)
T 3dwv_A          175 EEKLIPLLG  183 (187)
T ss_dssp             HHHHHHHC-
T ss_pred             HHHHHHHHh
Confidence            444444444

>2ggt_A SCO1 protein homolog, mitochondrial; copper chaperone, Cu-binding protein, mitochondrial assembly factor, redox, nickel, disuplhide, mitochondrion; 2.40A {Homo sapiens} SCOP: c.47.1.10 PDB: 2gqk_A 2gql_A 2gqm_A 2gt5_A 2gt6_A 2gvp_A 2hrf_A 2hrn_A 1wp0_A

Probab=99.94  E-value=1.4e-26  Score=174.50  Aligned_cols=135  Identities=14%  Similarity=0.244  Sum_probs=115.1

Q ss_pred             CCCCeEEeCCCCCeeecCCcCCCcEEEEEEcCCCChh-hHHHHHHHHHHHHHHHH----cCcEEEEEeCCC----HHHHH
Q 028030           73 APPSFTLKDQEGRNVSLSKFKGKPVVVYFYPADETPG-CTKQACAFRDSYEKFKK----AGAEVIGISGDD----SSSHK  143 (215)
Q Consensus        73 ~~P~f~l~~~~g~~~~l~~~~gk~~ll~f~~a~~C~~-C~~~~~~l~~l~~~~~~----~~v~vv~vs~d~----~~~~~  143 (215)
                      .+|+|++.|.+|+++++++++||++||+|| ++||++ |..+++.|+++++++++    .++++|+|+.|.    ++.++
T Consensus         2 ~ap~f~l~~~~G~~~~l~~~~gk~vll~f~-~~~C~~~C~~~~~~l~~l~~~~~~~~~~~~~~vv~vs~d~~~d~~~~~~   80 (164)
T 2ggt_A            2 LGGPFSLTTHTGERKTDKDYLGQWLLIYFG-FTHCPDVCPEELEKMIQVVDEIDSITTLPDLTPLFISIDPERDTKEAIA   80 (164)
T ss_dssp             CCCCCEEEETTSCEEEGGGGTTCEEEEEEE-CTTCSSHHHHHHHHHHHHHHHHHHSSSSCCEEEEEEESCTTTCCHHHHH
T ss_pred             CCCCeEEEeCCCCEEeHHHcCCCEEEEEEE-eCCCCchhHHHHHHHHHHHHHHhhccCCCcEEEEEEEeCCCCCCHHHHH
Confidence            579999999999999999999999999999 999998 99999999999999987    489999999874    78999


Q ss_pred             HHHHHcCCCeEEEE---cCChhHHHHhCCCccCCCCCC-------------ccEEEEEcCCCcEEEEEeCCCCCCccHHH
Q 028030          144 AFAKKYRLPYTLLS---DEGNKVRKEWGVPADFFGSLP-------------GRQTYILDKNGVVQLIYNNQFQPEKHIDE  207 (215)
Q Consensus       144 ~~~~~~~~~~~~~~---d~~~~~~~~~g~~~~~~g~~p-------------~~~~~lid~~G~v~~~~~g~~~~~~~~~~  207 (215)
                      +|+++++++|+++.   |...++.+.||+..     +|             ++++||||++|+|++.+.|..+.+...+.
T Consensus        81 ~~~~~~~~~~~~l~~~~d~~~~~~~~~~v~~-----~p~~~~~~~~~~~~~~~~~~lid~~G~i~~~~~g~~~~~~l~~~  155 (164)
T 2ggt_A           81 NYVKEFSPKLVGLTGTREEVDQVARAYRVYY-----SPGPKDEDEDYIVDHTIIMYLIGPDGEFLDYFGQNKRKGEIAAS  155 (164)
T ss_dssp             HHHHTTCSSCEEEECCHHHHHHHHHTTTCCE-----EEEEECTTSCEEEEECCEEEEECTTSCEEEEEETTCCHHHHHHH
T ss_pred             HHHHHcCCCeEEEeCCHHHHHHHHHhcCeEE-----EecCCCCCCCeeEeccceEEEECCCCeEEEEeCCCCCHHHHHHH
Confidence            99999999999985   44567899999975     33             23799999999999999886554444444


Q ss_pred             HHHHHh
Q 028030          208 TLKFLQ  213 (215)
Q Consensus       208 il~~l~  213 (215)
                      +.++++
T Consensus       156 l~~ll~  161 (164)
T 2ggt_A          156 IATHMR  161 (164)
T ss_dssp             HHHHHG
T ss_pred             HHHHHH
Confidence            444444

>3ia1_A THIO-disulfide isomerase/thioredoxin; oxidoreductase, PSI-2, NYSGXRC, structu genomics, protein structure initiative; 1.76A {Thermus thermophilus}

Probab=99.94  E-value=7.9e-27  Score=174.25  Aligned_cols=122  Identities=25%  Similarity=0.389  Sum_probs=114.8

Q ss_pred             cCCCCCCCCCeEEeCCCCCeeecCCcCCCcEEEEEEcCCCChhhHHHHHHHHHHHHHHHHcCcEEEEEeC---CCHHHHH
Q 028030           67 KVSKGQAPPSFTLKDQEGRNVSLSKFKGKPVVVYFYPADETPGCTKQACAFRDSYEKFKKAGAEVIGISG---DDSSSHK  143 (215)
Q Consensus        67 ~~~~g~~~P~f~l~~~~g~~~~l~~~~gk~~ll~f~~a~~C~~C~~~~~~l~~l~~~~~~~~v~vv~vs~---d~~~~~~  143 (215)
                      .+++|+++|+|++.+.+|+.+++++++ |++||+|| ++||++|+.+++.|.++++++   ++++++|+.   |+.+.++
T Consensus         4 ~l~~g~~~p~f~l~~~~g~~~~l~~~~-k~vll~f~-~~~C~~C~~~~~~l~~l~~~~---~v~~v~v~~d~~~~~~~~~   78 (154)
T 3ia1_A            4 AVKPGEPLPDFLLLDPKGQPVTPATVS-KPAVIVFW-ASWCTVCKAEFPGLHRVAEET---GVPFYVISREPRDTREVVL   78 (154)
T ss_dssp             CCCSBEECCCCCEECTTSCEECTTTSC-SSEEEEEE-CTTCHHHHHHHHHHHHHHHHH---CCCEEEEECCTTCCHHHHH
T ss_pred             cCCCCCcCCceEEECCCCCEechHHcC-CeEEEEEE-cccChhHHHHHHHHHHHHHHc---CCeEEEEeCCCcccHHHHH
Confidence            578999999999999999999999999 99999999 999999999999999999999   799999999   7889999


Q ss_pred             HHHHHcCCCeEEEEc---CChhHHHHhCCCccCCCCCCccEEEEEcCCCcEEEEEeCCCC
Q 028030          144 AFAKKYRLPYTLLSD---EGNKVRKEWGVPADFFGSLPGRQTYILDKNGVVQLIYNNQFQ  200 (215)
Q Consensus       144 ~~~~~~~~~~~~~~d---~~~~~~~~~g~~~~~~g~~p~~~~~lid~~G~v~~~~~g~~~  200 (215)
                      +|+++++++|+++.|   ....+.+.||+..     +|  ++||||++|+|+..+.|...
T Consensus        79 ~~~~~~~~~~~~~~d~~~~~~~~~~~~~v~~-----~P--~~~lid~~G~i~~~~~g~~~  131 (154)
T 3ia1_A           79 EYMKTYPRFIPLLASDRDRPHEVAARFKVLG-----QP--WTFVVDREGKVVALFAGRAG  131 (154)
T ss_dssp             HHHTTCTTEEECBCCSSCCHHHHHTTSSBCS-----SC--EEEEECTTSEEEEEEESBCC
T ss_pred             HHHHHcCCCcccccccccchHHHHHHhCCCc-----cc--EEEEECCCCCEEEEEcCCCC
Confidence            999999999999998   7788999999987     88  99999999999999998644

>2b7k_A SCO1 protein; metallochaperone, cytochrome C oxidase, metal binding protein; 1.80A {Saccharomyces cerevisiae} SCOP: c.47.1.10 PDB: 2b7j_A

Probab=99.94  E-value=3.1e-26  Score=179.24  Aligned_cols=148  Identities=16%  Similarity=0.242  Sum_probs=118.9

Q ss_pred             ccCCCCCCC--CCeEEeCCCCCeeecCCcCCCcEEEEEEcCCCChh-hHHHHHHHHHHHHHHHHc---CcEEEEEeCC--
Q 028030           66 AKVSKGQAP--PSFTLKDQEGRNVSLSKFKGKPVVVYFYPADETPG-CTKQACAFRDSYEKFKKA---GAEVIGISGD--  137 (215)
Q Consensus        66 ~~~~~g~~~--P~f~l~~~~g~~~~l~~~~gk~~ll~f~~a~~C~~-C~~~~~~l~~l~~~~~~~---~v~vv~vs~d--  137 (215)
                      ....+|+++  |+|++.|.+|+.+++++++||++||+|| ++||++ |..+++.|+++++++.++   +++||+|+.|  
T Consensus        11 ~~~~~g~~~~~p~f~l~d~~G~~v~l~~~~Gk~vlv~F~-at~C~~vC~~~~~~l~~l~~~~~~~~~~~v~vv~Is~D~~   89 (200)
T 2b7k_A           11 ANRGYGKPSLGGPFHLEDMYGNEFTEKNLLGKFSIIYFG-FSNCPDICPDELDKLGLWLNTLSSKYGITLQPLFITCDPA   89 (200)
T ss_dssp             -----CCCCCCCCCEEEETTSCEEEGGGGTTSCEEEEEE-CTTCCSHHHHHHHHHHHHHHHHHHHHCCCCEEEEEESCTT
T ss_pred             hHhccCCCCcCCCEEEEcCCCCEEeHHHcCCCEEEEEEE-CCCCcchhHHHHHHHHHHHHHHHHhhCCceEEEEEECCCC
Confidence            445678886  9999999999999999999999999999 999997 999999999999999864   7999999987  


Q ss_pred             --CHHHHHHHHHHcCCCeEEEEc---CChhHHHHhCCCccC---------CCCCCccEEEEEcCCCcEEEEEeCCCCCCc
Q 028030          138 --DSSSHKAFAKKYRLPYTLLSD---EGNKVRKEWGVPADF---------FGSLPGRQTYILDKNGVVQLIYNNQFQPEK  203 (215)
Q Consensus       138 --~~~~~~~~~~~~~~~~~~~~d---~~~~~~~~~g~~~~~---------~g~~p~~~~~lid~~G~v~~~~~g~~~~~~  203 (215)
                        +++.+++|+++++.+|+.+.+   ....+.+.||+....         +...+++++||||++|+|++.+.|..+.+.
T Consensus        90 ~d~~~~~~~~~~~~~~~~~~l~~~~d~~~~~~~~~gv~~~~p~~~~~~~~~~~~~~~~~~liD~~G~i~~~~~g~~~~~~  169 (200)
T 2b7k_A           90 RDSPAVLKEYLSDFHPSILGLTGTFDEVKNACKKYRVYFSTPPNVKPGQDYLVDHSIFFYLMDPEGQFVDALGRNYDEKT  169 (200)
T ss_dssp             TCCHHHHHHHHTTSCTTCEEEECCHHHHHHHHHHTTC--------------CTTTCCCEEEECTTSCEEEEECTTCCTTH
T ss_pred             CCCHHHHHHHHHHcCCCceEEeCCHHHHHHHHHHcCcEEeeccccCCCCCceeeecceEEEECCCCcEEEEeCCCCCHHH
Confidence              678999999999999988864   356788999987311         111234489999999999999988766666


Q ss_pred             cHHHHHHHHhc
Q 028030          204 HIDETLKFLQS  214 (215)
Q Consensus       204 ~~~~il~~l~~  214 (215)
                      ..+++.+.|+.
T Consensus       170 ~~~~i~~~l~~  180 (200)
T 2b7k_A          170 GVDKIVEHVKS  180 (200)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHHHH
Confidence            66777766653

>3cmi_A Peroxiredoxin HYR1; thioredoxin-like fold, oxidoreductase, peroxidase, redox-ACT center; 2.02A {Saccharomyces cerevisiae}

Probab=99.94  E-value=2e-27  Score=181.16  Aligned_cols=138  Identities=17%  Similarity=0.295  Sum_probs=103.6

Q ss_pred             CCCCCCeEEeCCCCCeeecCCcCCCcEEEEEEcCCCChhhHHHHHHHHHHHHHHHHcCcEEEEEeC--------CCHHHH
Q 028030           71 GQAPPSFTLKDQEGRNVSLSKFKGKPVVVYFYPADETPGCTKQACAFRDSYEKFKKAGAEVIGISG--------DDSSSH  142 (215)
Q Consensus        71 g~~~P~f~l~~~~g~~~~l~~~~gk~~ll~f~~a~~C~~C~~~~~~l~~l~~~~~~~~v~vv~vs~--------d~~~~~  142 (215)
                      |..+|+|+++|.+|+.+++++++||++||+|| ++||++|+ +++.|++++++|+++|++||+|+.        |+.+.+
T Consensus         9 ~~~~~~f~l~d~~G~~~~l~~~~Gk~vll~F~-a~wC~~C~-~~~~l~~l~~~~~~~~v~vv~vs~d~~~~~~~d~~~~~   86 (171)
T 3cmi_A            9 MSEFYKLAPVDKKGQPFPFDQLKGKVVLIVNV-ASKCGFTP-QYKELEALYKRYKDEGFTIIGFPCNQFGHQEPGSDEEI   86 (171)
T ss_dssp             -CGGGGCCCBBTTSCBCCGGGGTTCEEEEEEE-ESSSCCHH-HHHHHHHHHHHHGGGTEEEEEEEECSCC----------
T ss_pred             hhheeeeEEEcCCCCEecHHHcCCCEEEEEEE-ecCCCcch-hHHHHHHHHHHhccCCeEEEEEECcccCCCCCCCHHHH
Confidence            56889999999999999999999999999999 99999999 999999999999998999999997        456789


Q ss_pred             HHHH-HHcCCCeEEEEcCC--hh-HH--------HHhCCCccCCCCCC----ccEEEEEcCCCcEEEEEeCCCCCCccHH
Q 028030          143 KAFA-KKYRLPYTLLSDEG--NK-VR--------KEWGVPADFFGSLP----GRQTYILDKNGVVQLIYNNQFQPEKHID  206 (215)
Q Consensus       143 ~~~~-~~~~~~~~~~~d~~--~~-~~--------~~~g~~~~~~g~~p----~~~~~lid~~G~v~~~~~g~~~~~~~~~  206 (215)
                      ++|+ ++++++|+++.|.+  +. ..        +.||+..     +|    ++++||||++|+|++.+.|..+.+...+
T Consensus        87 ~~~~~~~~~~~~p~~~d~d~~~~~~~~~~~~~~~~~~~v~~-----~P~i~~~~~~~lid~~G~i~~~~~g~~~~~~l~~  161 (171)
T 3cmi_A           87 AQFCQLNYGVTFPIMKKIDVNGGNEDPVYKFLKSQKSGMLG-----LRGIKWNFEKFLVDKKGKVYERYSSLTKPSSLSE  161 (171)
T ss_dssp             --------CCCSCBBCCCBSSSTTBCHHHHHHHHHSCCSSS-----CCSCCSTTCEEEECSSSCEEEEECTTSCGGGGHH
T ss_pred             HHHHHhccCCCceEEeeccCCCccchHHHHHHHhccCCcCC-----CCcccccceEEEECCCCCEEEEeCCCCCHHHHHH
Confidence            9999 99999999997633  22 21        2355544     44    3389999999999999998766666666


Q ss_pred             HHHHHHhcC
Q 028030          207 ETLKFLQSS  215 (215)
Q Consensus       207 ~il~~l~~s  215 (215)
                      .+.++|+++
T Consensus       162 ~i~~ll~~~  170 (171)
T 3cmi_A          162 TIEELLKEV  170 (171)
T ss_dssp             HHHHHHTCC
T ss_pred             HHHHHHHhc
Confidence            666666653

>3raz_A Thioredoxin-related protein; structural genomics, PSI-2, protein structure initiative; 2.00A {Neisseria meningitidis serogroup B}

Probab=99.94  E-value=1.7e-26  Score=172.25  Aligned_cols=132  Identities=20%  Similarity=0.288  Sum_probs=112.1

Q ss_pred             CCCCeEEeCCCCCeeecCCcCCCcEEEEEEcCCCChhhHHHHHHHHHHHHHHHHcCcEEEEEeCCCHHHHHHHHHHcCCC
Q 028030           73 APPSFTLKDQEGRNVSLSKFKGKPVVVYFYPADETPGCTKQACAFRDSYEKFKKAGAEVIGISGDDSSSHKAFAKKYRLP  152 (215)
Q Consensus        73 ~~P~f~l~~~~g~~~~l~~~~gk~~ll~f~~a~~C~~C~~~~~~l~~l~~~~~~~~v~vv~vs~d~~~~~~~~~~~~~~~  152 (215)
                      ++|+|.+. .+|+.+++++++||++||+|| ++||++|+.+++.|+++++++++.+++|++|+.|+.+.+++|+++++++
T Consensus         4 pa~~~~~~-~~G~~~~l~~~~gk~vlv~F~-a~wC~~C~~~~~~l~~l~~~~~~~~v~vv~v~~d~~~~~~~~~~~~~~~   81 (151)
T 3raz_A            4 SADELAGW-KDNTPQSLQSLKAPVRIVNLW-ATWCGPCRKEMPAMSKWYKAQKKGSVDMVGIALDTSDNIGNFLKQTPVS   81 (151)
T ss_dssp             ---CEEET-TTCCEECGGGCCSSEEEEEEE-CTTCHHHHHHHHHHHHHHHTSCTTTEEEEEEESSCHHHHHHHHHHSCCS
T ss_pred             Ccchhhcc-cCCCEecHHHhCCCEEEEEEE-cCcCHHHHHHHHHHHHHHHHhccCCeEEEEEECCChHHHHHHHHHcCCC
Confidence            44555544 899999999999999999999 9999999999999999999998889999999999999999999999999


Q ss_pred             eEEEEcC---ChhHHHHhC--CCccCCCCCCccEEEEEcCCCcEEEEEeCCCCCCccHHHHHHHHhc
Q 028030          153 YTLLSDE---GNKVRKEWG--VPADFFGSLPGRQTYILDKNGVVQLIYNNQFQPEKHIDETLKFLQS  214 (215)
Q Consensus       153 ~~~~~d~---~~~~~~~~g--~~~~~~g~~p~~~~~lid~~G~v~~~~~g~~~~~~~~~~il~~l~~  214 (215)
                      |+++.|.   ...+.+.||  +..     +|  ++||||++|+|++.+.|..+. +.+++.++.+.+
T Consensus        82 ~~~~~~~~~~~~~~~~~~~~~v~~-----~P--~~~lid~~G~i~~~~~g~~~~-~~l~~~l~~l~~  140 (151)
T 3raz_A           82 YPIWRYTGANSRNFMKTYGNTVGV-----LP--FTVVEAPKCGYRQTITGEVNE-KSLTDAVKLAHS  140 (151)
T ss_dssp             SCEEEECCSCHHHHHHTTTCCSCC-----SS--EEEEEETTTTEEEECCSCCCH-HHHHHHHHHHHT
T ss_pred             CceEecCccchHHHHHHhCCccCC-----CC--EEEEECCCCcEEEEECCCCCH-HHHHHHHHHHHH
Confidence            9999865   356888898  655     88  999999999999999986543 445556665543

>3me7_A Putative uncharacterized protein; electron transfer protein, electron transport, structural GE PSI-2, protein structure initiative; 1.50A {Aquifex aeolicus} PDB: 3me8_A

Probab=99.94  E-value=5.6e-26  Score=173.39  Aligned_cols=141  Identities=18%  Similarity=0.152  Sum_probs=113.2

Q ss_pred             CCCCCCC-CeEEeCCCCCeeecCCcCCCcEEEEEEcCCCCh-hhHHHHHHHHHHHHHHHH--cCcEEEEEeCC---CHHH
Q 028030           69 SKGQAPP-SFTLKDQEGRNVSLSKFKGKPVVVYFYPADETP-GCTKQACAFRDSYEKFKK--AGAEVIGISGD---DSSS  141 (215)
Q Consensus        69 ~~g~~~P-~f~l~~~~g~~~~l~~~~gk~~ll~f~~a~~C~-~C~~~~~~l~~l~~~~~~--~~v~vv~vs~d---~~~~  141 (215)
                      .+|+++| +|+++|.+|+++++++++||++||+|| ++||+ .|..+++.|+++++++++  .++++|+|+.|   +++.
T Consensus         2 ~~G~~~P~~f~l~d~~G~~v~l~~~~Gk~vll~F~-~t~C~~~C~~~~~~l~~~~~~~~~~~~~~~vv~is~d~~d~~~~   80 (170)
T 3me7_A            2 SLGTYVPGDITLVDSYGNEFQLKNLKGKPIILSPI-YTHCRAACPLITKSLLKVIPKLGTPGKDFWVITFTFDPKDTLED   80 (170)
T ss_dssp             CTTCBCCTTCEEEETTCCEEEGGGGTTSCEEEEEE-CTTCCSHHHHHHHHHHTTHHHHCCBTTTBEEEEEECCTTCCHHH
T ss_pred             CCCCcCCCCeEEEcCCcCEEchHHhCCCEEEEEEE-CCCCCchhHHHHHHHHHHHHHhhhcCCceEEEEEECCCCCCHHH
Confidence            5899999 999999999999999999999999999 99997 699999999999999975  46999999986   6799


Q ss_pred             HHHHHHHcCCC---eEEEE--c--CChhHHHHhCCCcc--CCCCCCccEEEEEcCCCcEEEEEeCCCCCCccHHHHHHHH
Q 028030          142 HKAFAKKYRLP---YTLLS--D--EGNKVRKEWGVPAD--FFGSLPGRQTYILDKNGVVQLIYNNQFQPEKHIDETLKFL  212 (215)
Q Consensus       142 ~~~~~~~~~~~---~~~~~--d--~~~~~~~~~g~~~~--~~g~~p~~~~~lid~~G~v~~~~~g~~~~~~~~~~il~~l  212 (215)
                      +++|+++++++   |.++.  |  ...++.+.||+...  .++..+.+++||||++|+|+..+.|....   .+++++.|
T Consensus        81 ~~~~~~~~~~~~~~w~~l~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~lID~~G~i~~~~~g~~~~---~~~i~~~l  157 (170)
T 3me7_A           81 IKRFQKEYGIDGKGWKVVKAKTSEDLFKLLDAIDFRFMTAGNDFIHPNVVVVLSPELQIKDYIYGVNYN---YLEFVNAL  157 (170)
T ss_dssp             HHHHHHHTTCCSSSEEEEEESSHHHHHHHHHHTTCCCEEETTEEECCCEEEEECTTSBEEEEEESSSCC---HHHHHHHH
T ss_pred             HHHHHHHcCCCCCCeEEEeCCCHHHHHHHHHHCCeEEecCCCccccCceEEEECCCCeEEEEEeCCCCC---HHHHHHHH
Confidence            99999999965   44543  2  34678888887531  12223345999999999999998885322   34444444


Q ss_pred             h
Q 028030          213 Q  213 (215)
Q Consensus       213 ~  213 (215)
                      +
T Consensus       158 ~  158 (170)
T 3me7_A          158 R  158 (170)
T ss_dssp             H
T ss_pred             H
Confidence            3

>2r37_A Glutathione peroxidase 3; plasma, structural genomics consort oxidoreductase, secreted, selenium, selenocysteine; 1.85A {Homo sapiens}

Probab=99.94  E-value=3.9e-26  Score=179.75  Aligned_cols=143  Identities=9%  Similarity=0.115  Sum_probs=108.2

Q ss_pred             CCCCCCCCeEEeCCC-CCeeecCCcCCCcEEEEEEcCCCChhhHHHHHHHHHHHHHHHHcCcEEEEEeCC--------CH
Q 028030           69 SKGQAPPSFTLKDQE-GRNVSLSKFKGKPVVVYFYPADETPGCTKQACAFRDSYEKFKKAGAEVIGISGD--------DS  139 (215)
Q Consensus        69 ~~g~~~P~f~l~~~~-g~~~~l~~~~gk~~ll~f~~a~~C~~C~~~~~~l~~l~~~~~~~~v~vv~vs~d--------~~  139 (215)
                      .....+|+|+++|.+ |+.++|++++||++||+|| ++||++| .++|.|++++++|+++|++||+|+.|        +.
T Consensus        12 ~~~~~~pdF~l~d~~~G~~v~Ls~~kGKvvll~F~-At~C~~c-~e~p~L~~l~~~~~~~g~~vlgvs~d~f~~~e~~~~   89 (207)
T 2r37_A           12 GISGTIYEYGALTIDGEEYIPFKQYAGKYVLFVNV-ASYGGLT-GQYIELNALQEELAPFGLVILGFPCNQFGKQEPGEN   89 (207)
T ss_dssp             ---CCGGGCEEEBTTSSCEEEGGGGTTSEEEEEEE-CSSSTTT-THHHHHHHHHHHHGGGTEEEEEEECCCBTTCCCSCH
T ss_pred             cccCccCCeEeeeCCCCCEEcHHHhCCCEEEEEEe-CCCCCCh-HHHHHHHHHHHHhccCCEEEEEEECcccCcCCCCCH
Confidence            345689999999999 9999999999999999999 9999999 79999999999999999999999954        46


Q ss_pred             HHHHHHHH------HcCCCeEEEEcC--Chh----HHHHh----C----CCcc----------CCCCCCccEEEEEcCCC
Q 028030          140 SSHKAFAK------KYRLPYTLLSDE--GNK----VRKEW----G----VPAD----------FFGSLPGRQTYILDKNG  189 (215)
Q Consensus       140 ~~~~~~~~------~~~~~~~~~~d~--~~~----~~~~~----g----~~~~----------~~g~~p~~~~~lid~~G  189 (215)
                      +++++|++      +++++||++.|.  ++.    ++..+    +    +.+.          ..+...+|++||||++|
T Consensus        90 ~~i~~f~~~~~~~~~~~~~fp~l~d~d~~g~~~~~~~~~l~~~~~~~~~~~g~~~~~~~~p~~~~~i~~~~ttflID~~G  169 (207)
T 2r37_A           90 SEILPTLKYVRPGGGFVPNFQLFEKGDVNGEKEQKFYTFLKNSCPPTSELLGTSDRLFWEPMKVHDIRWNFEKFLVGPDG  169 (207)
T ss_dssp             HHHHHHHHHTSSCTTCCCSSEEBCCCCSSSTTCCHHHHHHHHHSCCSCSCCCCGGGBCCSSCCTTCCCSTTCEEEECTTS
T ss_pred             HHHHHHHHhcchhhccCccceeeeEeccCCcccchHHHHHHhhCccccccccccccccccccccCcccccceEEEECCCC
Confidence            88999999      999999998753  222    22211    1    1100          00111124899999999


Q ss_pred             cEEEEEeCCCCCCccHHHHHHHHh
Q 028030          190 VVQLIYNNQFQPEKHIDETLKFLQ  213 (215)
Q Consensus       190 ~v~~~~~g~~~~~~~~~~il~~l~  213 (215)
                      +|+.++.|....+...++|.++|+
T Consensus       170 ~i~~~~~g~~~~~~l~~~I~~ll~  193 (207)
T 2r37_A          170 IPIMRWHHRTTVSNVKMDILSYMR  193 (207)
T ss_dssp             CEEEEECTTSCHHHHHHHHHHHHH
T ss_pred             cEEEEECCCCCHHHHHHHHHHHHh
Confidence            999999886655444444444443

>2lja_A Putative thiol-disulfide oxidoreductase; structural genomics, unknown function, thioredoxin-like; NMR {Bacteroides vulgatus}

Probab=99.94  E-value=3.7e-26  Score=170.06  Aligned_cols=138  Identities=20%  Similarity=0.313  Sum_probs=121.7

Q ss_pred             cCCCCCCCC-CeEEeCCCCCeeecCCcCCCcEEEEEEcCCCChhhHHHHHHHHHHHHHHHHcCcEEEEEeCCC-HHHHHH
Q 028030           67 KVSKGQAPP-SFTLKDQEGRNVSLSKFKGKPVVVYFYPADETPGCTKQACAFRDSYEKFKKAGAEVIGISGDD-SSSHKA  144 (215)
Q Consensus        67 ~~~~g~~~P-~f~l~~~~g~~~~l~~~~gk~~ll~f~~a~~C~~C~~~~~~l~~l~~~~~~~~v~vv~vs~d~-~~~~~~  144 (215)
                      .+++|+++| +|++.+.+|+.+++++++||++||+|| ++||++|+.+++.|++++++++++++.+++|+.|+ .+.+++
T Consensus         2 ~l~~G~~~p~~f~l~~~~g~~~~l~~~~gk~~lv~f~-~~~C~~C~~~~~~l~~l~~~~~~~~~~~v~v~~d~~~~~~~~   80 (152)
T 2lja_A            2 SLRSGNPSAASFSYPDINGKTVSLADLKGKYIYIDVW-ATWCGPCRGELPALKELEEKYAGKDIHFVSLSCDKNKKAWEN   80 (152)
T ss_dssp             CTTTTCCCSSSCEEEETTTEEEESTTTTTSEEEEEEC-CSSCCGGGGTHHHHHHHHHHSTTSSEEEEEEECCSCHHHHHH
T ss_pred             ccccCCCCCcccEeecCCCCEeeHHHcCCCEEEEEEE-CCcCHhHHHHhHHHHHHHHHhccCCeEEEEEEccCcHHHHHH
Confidence            467999999 999999999999999999999999999 99999999999999999999998889999999875 578999


Q ss_pred             HHHHcCCCe-EEEEcCChhHHHHhCCCccCCCCCCccEEEEEcCCCcEEEEEeCCCCCCccHHHHHHHHh
Q 028030          145 FAKKYRLPY-TLLSDEGNKVRKEWGVPADFFGSLPGRQTYILDKNGVVQLIYNNQFQPEKHIDETLKFLQ  213 (215)
Q Consensus       145 ~~~~~~~~~-~~~~d~~~~~~~~~g~~~~~~g~~p~~~~~lid~~G~v~~~~~g~~~~~~~~~~il~~l~  213 (215)
                      |++++++++ +++.|.+.++.+.|++..     +|  ++++||++|+|++.+.|..+ .+.++++++.+.
T Consensus        81 ~~~~~~~~~~~~~~d~~~~~~~~~~v~~-----~P--~~~lid~~G~i~~~~~g~~~-~~~l~~~l~~~~  142 (152)
T 2lja_A           81 MVTKDQLKGIQLHMGTDRTFMDAYLING-----IP--RFILLDRDGKIISANMTRPS-DPKTAEKFNELL  142 (152)
T ss_dssp             HHHHHTCCSEEEECSSCTHHHHHTTCCS-----SC--CEEEECTTSCEEESSCCCTT-CHHHHHHHHHHH
T ss_pred             HHHhcCCCCceeecCcchhHHHHcCcCC-----CC--EEEEECCCCeEEEccCCCCC-HHHHHHHHHHHh
Confidence            999999995 566788889999999987     88  99999999999998877543 345666665554

>1zzo_A RV1677; thioredoxin fold, structural genomics, PSI, protein structure initiative, TB structural genomics consortium, TBSGC; 1.60A {Mycobacterium tuberculosis} SCOP: c.47.1.10 PDB: 3ios_A

Probab=99.94  E-value=1e-25  Score=163.87  Aligned_cols=120  Identities=24%  Similarity=0.446  Sum_probs=111.7

Q ss_pred             CCCCCCCeEEeCCCCCeeecCCcCCCcEEEEEEcCCCChhhHHHHHHHHHHHHHHHHcCcEEEEEeCCC-HHHHHHHHHH
Q 028030           70 KGQAPPSFTLKDQEGRNVSLSKFKGKPVVVYFYPADETPGCTKQACAFRDSYEKFKKAGAEVIGISGDD-SSSHKAFAKK  148 (215)
Q Consensus        70 ~g~~~P~f~l~~~~g~~~~l~~~~gk~~ll~f~~a~~C~~C~~~~~~l~~l~~~~~~~~v~vv~vs~d~-~~~~~~~~~~  148 (215)
                      +|.++|+|++.+.+|+.+++++++||++||+|| ++||++|+..++.|++++++++  ++.+++|+.|+ .+.+++|+++
T Consensus         1 ~~~~~p~~~~~~~~g~~~~l~~~~~k~~ll~f~-~~~C~~C~~~~~~l~~~~~~~~--~~~~~~v~~~~~~~~~~~~~~~   77 (136)
T 1zzo_A            1 TVPAQLQFSAKTLDGHDFHGESLLGKPAVLWFW-APWCPTCQGEAPVVGQVAASHP--EVTFVGVAGLDQVPAMQEFVNK   77 (136)
T ss_dssp             CCCGGGCCEEEBTTSCEEEGGGGTTSCEEEEEE-CTTCHHHHHHHHHHHHHHHHCT--TSEEEEEECSSCHHHHHHHHHH
T ss_pred             CCCCCCCcccccCCCCEeeHHHhCCCeEEEEEE-cCCChhHHHHHHHHHHHHHHcC--CeEEEEEeCCCCHHHHHHHHHH
Confidence            367899999999999999999999999999999 9999999999999999999987  79999999865 7899999999


Q ss_pred             cCC-CeEEEEcCChhHHHHhCCCccCCCCCCccEEEEEcCCCcEEEEEeCCCC
Q 028030          149 YRL-PYTLLSDEGNKVRKEWGVPADFFGSLPGRQTYILDKNGVVQLIYNNQFQ  200 (215)
Q Consensus       149 ~~~-~~~~~~d~~~~~~~~~g~~~~~~g~~p~~~~~lid~~G~v~~~~~g~~~  200 (215)
                      +++ +|+++.|.+..+.+.||+..     +|  +++++|++|+|+ .+.|..+
T Consensus        78 ~~~~~~~~~~d~~~~~~~~~~i~~-----~P--~~~~id~~g~i~-~~~g~~~  122 (136)
T 1zzo_A           78 YPVKTFTQLADTDGSVWANFGVTQ-----QP--AYAFVDPHGNVD-VVRGRMS  122 (136)
T ss_dssp             TTCTTSEEEECTTCHHHHHTTCCS-----SS--EEEEECTTCCEE-EEESCCC
T ss_pred             cCCCceEEEEcCCcHHHHHcCCCC-----Cc--eEEEECCCCCEE-EEecCCC
Confidence            999 89999999999999999987     88  999999999999 8888644

>1xiy_A Peroxiredoxin, pfaop; alpha-aneurysm, thioredoxin fold, peroxiredoxin fold, oxidoreductase; 1.80A {Plasmodium falciparum} SCOP: c.47.1.10

Probab=99.94  E-value=3.2e-26  Score=176.55  Aligned_cols=146  Identities=17%  Similarity=0.332  Sum_probs=125.2

Q ss_pred             CCCCCCCCCeEEeC--C---------CC----CeeecCC-cCCCcEEEEEEcCCCChhhH-HHHHHHHHHHHHH-HHcCc
Q 028030           68 VSKGQAPPSFTLKD--Q---------EG----RNVSLSK-FKGKPVVVYFYPADETPGCT-KQACAFRDSYEKF-KKAGA  129 (215)
Q Consensus        68 ~~~g~~~P~f~l~~--~---------~g----~~~~l~~-~~gk~~ll~f~~a~~C~~C~-~~~~~l~~l~~~~-~~~~v  129 (215)
                      +++|+++|+|++.+  .         +|    +.+++++ ++||++||+|||+.||+.|. .+++.+++.++++ ++.|+
T Consensus         1 l~vGd~aPdf~l~~~~~~~~~~~~~~~G~~~~~~v~l~d~~~gk~vVL~fyP~~fTp~Ct~~e~~~f~~~~~~f~~~~g~   80 (182)
T 1xiy_A            1 MKENDLIPNVKVMIDVRNMNNISDTDGSPNDFTSIDTHELFNNKKILLISLPGAFTPTCSTKMIPGYEEEYDYFIKENNF   80 (182)
T ss_dssp             CCTTCBCCCCEEEEEHHHHTC--------CCEEEEEHHHHSTTCEEEEEECSCTTCHHHHHTHHHHHHHTHHHHHTTSCC
T ss_pred             CCCCCCCCCeEEEcccccccccccccCCCccceeEeHHHHhCCCcEEEEEeCCCCCCCCCHHHHHHHHHHHHHHHHhCCC
Confidence            46899999999988  4         67    7999999 59999999999999999999 9999999999999 99999


Q ss_pred             E-EEEEeCCCHHHHHHHHHHcCC-CeEEEEcCChhHHHHhCCCccC--CC--CCCccEEEEEcCCCcEEEEEeCCCCC--
Q 028030          130 E-VIGISGDDSSSHKAFAKKYRL-PYTLLSDEGNKVRKEWGVPADF--FG--SLPGRQTYILDKNGVVQLIYNNQFQP--  201 (215)
Q Consensus       130 ~-vv~vs~d~~~~~~~~~~~~~~-~~~~~~d~~~~~~~~~g~~~~~--~g--~~p~~~~~lid~~G~v~~~~~g~~~~--  201 (215)
                      + |++||.|+++.+++|.+++++ +|+++.|.++++.++||+..+.  .|  ....|.+|||| +|+|++.+......  
T Consensus        81 ~~V~gvS~D~~~~~~~~~~~~~~~~f~lLsD~~~~~a~~yGv~~~~~~~G~g~~~~R~tfvId-dG~V~~~~v~~~~~~~  159 (182)
T 1xiy_A           81 DDIYCITNNDIYVLKSWFKSMDIKKIKYISDGNSSFTDSMNMLVDKSNFFMGMRPWRFVAIVE-NNILVKMFQEKDKQHN  159 (182)
T ss_dssp             SEEEEEESSCHHHHHHHHHHTTCCSSEEEECTTSHHHHHTTCEEECGGGTCCEEECCEEEEEE-TTEEEEEEECSSCCTT
T ss_pred             cEEEEEeCCCHHHHHHHHHHcCCCCceEEEeCchHHHHHhCCceeccccCCCCceEEEEEEEc-CCEEEEEEEeCCcccc
Confidence            5 999999999999999999999 6999999999999999997432  23  12346899999 99999998764221  


Q ss_pred             -------CccHHHHHHHHhc
Q 028030          202 -------EKHIDETLKFLQS  214 (215)
Q Consensus       202 -------~~~~~~il~~l~~  214 (215)
                             ....+++|+.|++
T Consensus       160 ~~~~~~~~~~~~~vL~~L~~  179 (182)
T 1xiy_A          160 IQTDPYDISTVNNVKEFLKN  179 (182)
T ss_dssp             CSSCCCSTTSHHHHHHHHHC
T ss_pred             cccCcccCCCHHHHHHHHHh
Confidence                   3678999999875

>2hyx_A Protein DIPZ; thioredoxin fold, jelly-roll, structural genomics, TB struct genomics consortium, TBSGC, unknown function; 1.90A {Mycobacterium tuberculosis}

Probab=99.94  E-value=5.2e-26  Score=192.04  Aligned_cols=130  Identities=19%  Similarity=0.334  Sum_probs=120.8

Q ss_pred             ccCCCCCCCCCeE-----EeCCCCCeeecCCcCCCcEEEEEEcCCCChhhHHHHHHHHHHHHHHHHcCcEEEEEeCC---
Q 028030           66 AKVSKGQAPPSFT-----LKDQEGRNVSLSKFKGKPVVVYFYPADETPGCTKQACAFRDSYEKFKKAGAEVIGISGD---  137 (215)
Q Consensus        66 ~~~~~g~~~P~f~-----l~~~~g~~~~l~~~~gk~~ll~f~~a~~C~~C~~~~~~l~~l~~~~~~~~v~vv~vs~d---  137 (215)
                      ..+.+|+++|+|+     +.+.+|+.+++++++||++||+|| ++||++|+.+++.|++++++|++++++||+|+.|   
T Consensus        49 ~~l~vG~~aPdF~~~~~wL~d~dG~~vsLsdl~GK~vLl~F~-atwC~~C~~~~p~L~~l~~~~~~~~v~vi~Vs~d~~~  127 (352)
T 2hyx_A           49 AQLESCGTAPDLKGITGWLNTPGNKPIDLKSLRGKVVLIDFW-AYSCINCQRAIPHVVGWYQAYKDSGLAVIGVHTPEYA  127 (352)
T ss_dssp             SSCCCCCBCCCCCSCCEEESSGGGCCCCGGGGTTSEEEEEEE-CTTCHHHHHHHHHHHHHHHHHGGGTEEEEEEECCSSG
T ss_pred             cccCCCCcCCCccccccccCCCCCCEEcHHHhCCCEEEEEEE-CCCChhHHHHHHHHHHHHHHhhcCCeEEEEEECCccc
Confidence            4578999999999     999999999999999999999999 9999999999999999999999889999999974   


Q ss_pred             ---CHHHHHHHHHHcCCCeEEEEcCChhHHHHhCCCccCCCCCCccEEEEEcCCCcEEEEEeCCCCCCc
Q 028030          138 ---DSSSHKAFAKKYRLPYTLLSDEGNKVRKEWGVPADFFGSLPGRQTYILDKNGVVQLIYNNQFQPEK  203 (215)
Q Consensus       138 ---~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~g~~~~~~g~~p~~~~~lid~~G~v~~~~~g~~~~~~  203 (215)
                         +++.+++|+++++++|+++.|.+.++.+.|++..     +|  ++||||++|+|+..+.|..+.+.
T Consensus       128 ~~d~~~~~~~~~~~~~l~fpv~~D~~~~l~~~ygV~~-----~P--t~~lID~~G~Iv~~~~G~~~~~~  189 (352)
T 2hyx_A          128 FEKVPGNVAKGAANLGISYPIALDNNYATWTNYRNRY-----WP--AEYLIDATGTVRHIKFGEGDYNV  189 (352)
T ss_dssp             GGGCHHHHHHHHHHHTCCSCEEECTTSHHHHHTTCCE-----ES--EEEEECTTSBEEEEEESBCCHHH
T ss_pred             ccCCHHHHHHHHHHcCCCccEEeCCcHHHHHHcCCCc-----cC--EEEEEeCCCeEEEEEcCCCCHHH
Confidence               5789999999999999999999999999999987     88  99999999999999998654433

>2rli_A SCO2 protein homolog, mitochondrial; copper protein, thioredoxin fold, metal transport, structural genomics, spine2-complexes; NMR {Homo sapiens}

Probab=99.94  E-value=9e-26  Score=171.30  Aligned_cols=137  Identities=17%  Similarity=0.288  Sum_probs=113.3

Q ss_pred             CCeEEeCCCCCeeecCCcCCCcEEEEEEcCCCChh-hHHHHHHHHHHHHHHHH----cCcEEEEEeCC----CHHHHHHH
Q 028030           75 PSFTLKDQEGRNVSLSKFKGKPVVVYFYPADETPG-CTKQACAFRDSYEKFKK----AGAEVIGISGD----DSSSHKAF  145 (215)
Q Consensus        75 P~f~l~~~~g~~~~l~~~~gk~~ll~f~~a~~C~~-C~~~~~~l~~l~~~~~~----~~v~vv~vs~d----~~~~~~~~  145 (215)
                      |+|++.|.+|+.+++++++||++||+|| ++||++ |+.+++.|+++++++++    .+++||+|+.|    +++.+++|
T Consensus         7 p~f~l~~~~G~~~~l~~~~gk~vll~F~-~~~C~~~C~~~~~~l~~l~~~~~~~~~~~~v~vv~is~d~~~d~~~~~~~~   85 (171)
T 2rli_A            7 GDFHLLDHRGRARCKADFRGQWVLMYFG-FTHCPDICPDELEKLVQVVRQLEAEPGLPPVQPVFITVDPERDDVEAMARY   85 (171)
T ss_dssp             SCCEEEETTSCEEETTTTTTSEEEEEEE-CTTCSSSHHHHHHHHHHHHHHHHHSTTSCCEEEEEEESCSTTCCHHHHHHH
T ss_pred             CCeEEEeCCCCEEeHHHhCCCEEEEEEE-cCCCCchhHHHHHHHHHHHHHHhhccCCCceEEEEEEECCCCCCHHHHHHH
Confidence            8999999999999999999999999999 999998 99999999999999986    48999999987    57899999


Q ss_pred             HHHcCCCeEEEEcCC---hhHHHHhCCCccC--------CCCCCccEEEEEcCCCcEEEEEeCCCCCCccHHHHHHHH
Q 028030          146 AKKYRLPYTLLSDEG---NKVRKEWGVPADF--------FGSLPGRQTYILDKNGVVQLIYNNQFQPEKHIDETLKFL  212 (215)
Q Consensus       146 ~~~~~~~~~~~~d~~---~~~~~~~g~~~~~--------~g~~p~~~~~lid~~G~v~~~~~g~~~~~~~~~~il~~l  212 (215)
                      +++++++|+++.+..   .++.+.||+....        +...+.+++||||++|+|++.+.|..+.+...+.+.+++
T Consensus        86 ~~~~~~~~~~l~~~~~~~~~~~~~~~v~~~p~~~~~~~~~~~~~~~~~~lid~~G~i~~~~~g~~~~~~l~~~l~~ll  163 (171)
T 2rli_A           86 VQDFHPRLLGLTGSTKQVAQASHSYRVYYNAGPKDEDQDYIVDHSIAIYLLNPDGLFTDYYGRSRSAEQISDSVRRHM  163 (171)
T ss_dssp             HHTTCTTCCEEECCHHHHHHHHHHSCCCCEECCCCSSCCCCEECCCEEEEECTTSCEEEEEESSCCHHHHHHHHHHHH
T ss_pred             HHHcCCCeEEEeCCHHHHHHHHHHhCeEEEecCCCCCCCeEEeccceEEEECCCCeEEEEECCCCCHHHHHHHHHHHH
Confidence            999999999988643   4789999987521        001123389999999999999988655444444444443

>3ha9_A Uncharacterized thioredoxin-like protein; PSI, MCSG, structural G midwest center for structural genomics, protein structure initiative; 1.70A {Aeropyrum pernix}

Probab=99.94  E-value=1e-26  Score=175.80  Aligned_cols=134  Identities=20%  Similarity=0.310  Sum_probs=118.2

Q ss_pred             ccCCCCCCCCCeEEeCCCCCeeecCCcCCCcEEEEEEcCCCChhhHHHHHHHHHHHHHHHHcCcEEEEEeCC--------
Q 028030           66 AKVSKGQAPPSFTLKDQEGRNVSLSKFKGKPVVVYFYPADETPGCTKQACAFRDSYEKFKKAGAEVIGISGD--------  137 (215)
Q Consensus        66 ~~~~~g~~~P~f~l~~~~g~~~~l~~~~gk~~ll~f~~a~~C~~C~~~~~~l~~l~~~~~~~~v~vv~vs~d--------  137 (215)
                      ...++|+++|+|++.+.+|+.+++++++||++||+|| ++||++|+.+++.|.+++++++  +++|++|+.|        
T Consensus         9 ~~~~~g~~~p~~~l~~~~g~~~~l~~~~gk~~lv~F~-~~~C~~C~~~~~~l~~l~~~~~--~v~vv~i~~d~~~~~~~~   85 (165)
T 3ha9_A            9 HSEEVLEREASFSLTTIDGEVISLNNVGGDVVILWFM-AAWCPSCVYMADLLDRLTEKYR--EISVIAIDFWTAEALKAL   85 (165)
T ss_dssp             HHHHHHHHHHCCCEEBTTSCEECGGGCCSSEEEEEEE-CTTCTTHHHHHHHHHHHHHHCT--TEEEEEEECCSHHHHHHH
T ss_pred             ccccccCcCCCCEeecCCCCEeeHHHhCCCEEEEEEE-CCCCcchhhhHHHHHHHHHHcC--CcEEEEEEeccccccccc
Confidence            3457899999999999999999999999999999999 9999999999999999999998  7999999987        


Q ss_pred             -----------CHHHHHHHHHHcCC-CeEEEEcCChhHHHHhCCCccCCCCCCccEEEEEcCCCcEEEEEeCCCCCCccH
Q 028030          138 -----------DSSSHKAFAKKYRL-PYTLLSDEGNKVRKEWGVPADFFGSLPGRQTYILDKNGVVQLIYNNQFQPEKHI  205 (215)
Q Consensus       138 -----------~~~~~~~~~~~~~~-~~~~~~d~~~~~~~~~g~~~~~~g~~p~~~~~lid~~G~v~~~~~g~~~~~~~~  205 (215)
                                 +.+.+++|++++++ +|+++.| +.++.+.|++..     +|  +++|||++|+|++  .|.......+
T Consensus        86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d-~~~~~~~~~v~~-----~P--~~~lid~~G~i~~--~g~~~~~~~l  155 (165)
T 3ha9_A           86 GLNKPGYPPPDTPEMFRKFIANYGDPSWIMVMD-DGSLVEKFNVRS-----ID--YIVIMDKSSNVLY--AGTTPSLGEL  155 (165)
T ss_dssp             TCCSTTSCCCCCHHHHHHHHHHHSCTTSEEEEC-CSHHHHHTTCCS-----SS--EEEEEETTCCEEE--EEESCCHHHH
T ss_pred             ccccccCCCCCCHHHHHHHHHHcCCCCeeEEeC-hHHHHHHhCCCC-----ce--EEEEEcCCCcEEE--eCCCCCHHHH
Confidence                       77999999999999 9999999 999999999987     88  9999999999998  4543233444


Q ss_pred             HHHHHHH
Q 028030          206 DETLKFL  212 (215)
Q Consensus       206 ~~il~~l  212 (215)
                      ++.++.+
T Consensus       156 ~~~l~~l  162 (165)
T 3ha9_A          156 ESVIKSV  162 (165)
T ss_dssp             HHHHHHC
T ss_pred             HHHHHHH
Confidence            5555443

>1lu4_A Soluble secreted antigen MPT53; thioredoxin-like fold, structural genomics, PSI, protein structure initiative; 1.12A {Mycobacterium tuberculosis} SCOP: c.47.1.10

Probab=99.94  E-value=1.3e-25  Score=163.68  Aligned_cols=114  Identities=22%  Similarity=0.391  Sum_probs=108.2

Q ss_pred             CCCCCeEEeCCCCCeeecCCcCCCcEEEEEEcCCCChhhHHHHHHHHHHHHHHHHcCcEEEEEeCCC-HHHHHHHHHHcC
Q 028030           72 QAPPSFTLKDQEGRNVSLSKFKGKPVVVYFYPADETPGCTKQACAFRDSYEKFKKAGAEVIGISGDD-SSSHKAFAKKYR  150 (215)
Q Consensus        72 ~~~P~f~l~~~~g~~~~l~~~~gk~~ll~f~~a~~C~~C~~~~~~l~~l~~~~~~~~v~vv~vs~d~-~~~~~~~~~~~~  150 (215)
                      .++|+|++.+.+|+.+++++++||++||+|| ++||++|+.+++.|++++++++  ++.+++|+.|+ .+.+++|+++++
T Consensus         2 ~~~p~~~l~~~~g~~~~l~~~~~k~~lv~f~-~~~C~~C~~~~~~l~~~~~~~~--~~~~~~v~~~~~~~~~~~~~~~~~   78 (136)
T 1lu4_A            2 DERLQFTATTLSGAPFDGASLQGKPAVLWFW-TPWCPFCNAEAPSLSQVAAANP--AVTFVGIATRADVGAMQSFVSKYN   78 (136)
T ss_dssp             GGGGCCEEEBTTSCEEEGGGGTTSCEEEEEE-CTTCHHHHHHHHHHHHHHHHCT--TSEEEEEECSSCHHHHHHHHHHHT
T ss_pred             CCCCCeEeecCCCCeecHHHhCCCEEEEEEE-CCcChhHHHHHHHHHHHHHHCC--CcEEEEEEcCCCHHHHHHHHHHcC
Confidence            3679999999999999999999999999999 9999999999999999999997  79999999976 899999999999


Q ss_pred             CCeEEEEcCChhHHHHhCCCccCCCCCCccEEEEEcCCCcEEEEEe
Q 028030          151 LPYTLLSDEGNKVRKEWGVPADFFGSLPGRQTYILDKNGVVQLIYN  196 (215)
Q Consensus       151 ~~~~~~~d~~~~~~~~~g~~~~~~g~~p~~~~~lid~~G~v~~~~~  196 (215)
                      ++|+++.|.+..+.+.|++..     +|  +++++|++|+|+ .+.
T Consensus        79 ~~~~~~~d~~~~~~~~~~i~~-----~P--~~~lid~~G~i~-~~~  116 (136)
T 1lu4_A           79 LNFTNLNDADGVIWARYNVPW-----QP--AFVFYRADGTST-FVN  116 (136)
T ss_dssp             CCSEEEECTTSHHHHHTTCCS-----SS--EEEEECTTSCEE-EEC
T ss_pred             CCceEEECCchhHHHhcCCCC-----CC--EEEEECCCCcEE-EEE
Confidence            999999999999999999987     88  999999999999 887

>2ls5_A Uncharacterized protein; structural genomics, unknown function, thioredoxin-like, NEW structural genomics research consortium; NMR {Bacteroides thetaiotaomicron}

Probab=99.88  E-value=6.1e-28  Score=181.51  Aligned_cols=140  Identities=24%  Similarity=0.395  Sum_probs=121.2

Q ss_pred             ccCCCCCCCCCeEEeCCCCCeeecCCcCCCcEEEEEEcCCCChhhHHHHHHHHH-HHHHHH-HcCcEEEEEeCCCH-HHH
Q 028030           66 AKVSKGQAPPSFTLKDQEGRNVSLSKFKGKPVVVYFYPADETPGCTKQACAFRD-SYEKFK-KAGAEVIGISGDDS-SSH  142 (215)
Q Consensus        66 ~~~~~g~~~P~f~l~~~~g~~~~l~~~~gk~~ll~f~~a~~C~~C~~~~~~l~~-l~~~~~-~~~v~vv~vs~d~~-~~~  142 (215)
                      ..+++|+++|+|++.+.+|+.+++++++||++||+|| ++||++|+.+++.|.+ ++++++ +.++++++|+.|+. +.+
T Consensus         5 ~~l~~g~~~p~f~l~~~~g~~~~l~~~~gk~vll~f~-a~~C~~C~~~~~~l~~~l~~~~~~~~~~~vv~v~~d~~~~~~   83 (159)
T 2ls5_A            5 YIVRIGEMAPDFTITLTDGKQVTLSSLRGKVVMLQFT-ASWCGVCRKEMPFIEKDIWLKHKDNADFALIGIDRDEPLEKV   83 (159)
Confidence            3568999999999999999999999999999999999 9999999999999998 999998 67899999999865 678


Q ss_pred             HHHHHHcCCCeEEEEcCChhHHHHhCCCccCCCCCCccEEEEEcCCCcEEEEEeCCCCCCccHHHHHHHHh
Q 028030          143 KAFAKKYRLPYTLLSDEGNKVRKEWGVPADFFGSLPGRQTYILDKNGVVQLIYNNQFQPEKHIDETLKFLQ  213 (215)
Q Consensus       143 ~~~~~~~~~~~~~~~d~~~~~~~~~g~~~~~~g~~p~~~~~lid~~G~v~~~~~g~~~~~~~~~~il~~l~  213 (215)
                      ++|.++++++|+++.|.++++.+.|++..   ..+|  +++|||++|+|++.+.|. . ...++++++.|+
T Consensus        84 ~~~~~~~~~~~~~~~d~~~~~~~~~~~~~---~~~P--~~~lid~~G~i~~~~~g~-~-~~~l~~~l~~l~  147 (159)
T 2ls5_A           84 LAFAKSTGVTYPLGLDPGADIFAKYALRD---AGIT--RNVLIDREGKIVKLTRLY-N-EEEFASLVQQIN  147 (159)
Confidence            99999999999999999999999999642   1278  999999999999988773 2 234555655544

>4evm_A Thioredoxin family protein; structural genomics, niaid, national institute of allergy AN infectious diseases; 1.51A {Streptococcus pneumoniae}

Probab=99.93  E-value=4.5e-25  Score=160.33  Aligned_cols=118  Identities=20%  Similarity=0.304  Sum_probs=109.1

Q ss_pred             CCCCeEEeCCCCCeeecCCcCCCcEEEEEEcCCCChhhHHHHHHHHHHHHHHHHcCcEEEEE------eCCCHHHHHHHH
Q 028030           73 APPSFTLKDQEGRNVSLSKFKGKPVVVYFYPADETPGCTKQACAFRDSYEKFKKAGAEVIGI------SGDDSSSHKAFA  146 (215)
Q Consensus        73 ~~P~f~l~~~~g~~~~l~~~~gk~~ll~f~~a~~C~~C~~~~~~l~~l~~~~~~~~v~vv~v------s~d~~~~~~~~~  146 (215)
                      ++|+|++.+.+|+.+++++++||++||+|| ++||++|+.+++.|++++++++ .++.+++|      ..++.+.+++|+
T Consensus         1 ~~p~f~l~~~~g~~~~l~~~~gk~~lv~f~-~~~C~~C~~~~~~l~~~~~~~~-~~~~~v~i~~~~~~~~~~~~~~~~~~   78 (138)
T 4evm_A            1 EVADFELMGVDGKTYRLSDYKGKKVYLKFW-ASWCSICLASLPDTDEIAKEAG-DDYVVLTVVSPGHKGEQSEADFKNWY   78 (138)
T ss_dssp             CCCCCEEEBTTSCEEEGGGGTTSEEEEEEC-CTTCHHHHHHHHHHHHHHHTCT-TTEEEEEEECTTSTTCCCHHHHHHHH
T ss_pred             CCCcceeECCCCCEEEHHHhCCCEEEEEEE-cCcCHHHHHHHHHHHHHHHHhC-CCcEEEEEEcCCCCchhhHHHHHHHH
Confidence            589999999999999999999999999999 9999999999999999999855 46999999      346779999999


Q ss_pred             HHcCC-CeEEEEcCChhHHHHhCCCccCCCCCCccEEEEEcCCCcEEEEEeCCC
Q 028030          147 KKYRL-PYTLLSDEGNKVRKEWGVPADFFGSLPGRQTYILDKNGVVQLIYNNQF  199 (215)
Q Consensus       147 ~~~~~-~~~~~~d~~~~~~~~~g~~~~~~g~~p~~~~~lid~~G~v~~~~~g~~  199 (215)
                      +++++ +|+++.|.+..+.+.||+..     +|  +++++|++|+|++.+.|..
T Consensus        79 ~~~~~~~~~~~~d~~~~~~~~~~v~~-----~P--~~~lid~~G~i~~~~~g~~  125 (138)
T 4evm_A           79 KGLDYKNLPVLVDPSGKLLETYGVRS-----YP--TQAFIDKEGKLVKTHPGFM  125 (138)
T ss_dssp             TTCCCTTCCEEECTTCHHHHHTTCCS-----SS--EEEEECTTCCEEEEEESCC
T ss_pred             hhcCCCCeeEEECcchHHHHHcCccc-----CC--eEEEECCCCcEEEeecCCC
Confidence            99999 89999999999999999987     88  9999999999999999854

>2b1k_A Thiol:disulfide interchange protein DSBE; C-terminal thioredoxin-like domain, N-terminal beta-sheet, fingerprint rigion, oxidoreductase; 1.90A {Escherichia coli} PDB: 3k8n_A 2g0f_A 1z5y_E 2b1l_A

Probab=99.93  E-value=3.9e-25  Score=167.55  Aligned_cols=126  Identities=24%  Similarity=0.447  Sum_probs=112.9

Q ss_pred             cccCCCCCCCCCeEEeCC--CCCeeecCCc-CCCcEEEEEEcCCCChhhHHHHHHHHHHHHHHHHcCcEEEEEeC-CCHH
Q 028030           65 SAKVSKGQAPPSFTLKDQ--EGRNVSLSKF-KGKPVVVYFYPADETPGCTKQACAFRDSYEKFKKAGAEVIGISG-DDSS  140 (215)
Q Consensus        65 ~~~~~~g~~~P~f~l~~~--~g~~~~l~~~-~gk~~ll~f~~a~~C~~C~~~~~~l~~l~~~~~~~~v~vv~vs~-d~~~  140 (215)
                      ...+.+|+++|+|++.+.  +|+.++++++ +||++||+|| ++||++|+.++|.|++++++    ++++++|+. ++.+
T Consensus        19 ~~~~~~G~~~P~f~l~~~~~~g~~~~~~~~~~gk~vll~F~-a~~C~~C~~~~~~l~~l~~~----~v~vv~v~~~~~~~   93 (168)
T 2b1k_A           19 LESALIGKPVPKFRLESLDNPGQFYQADVLTQGKPVLLNVW-ATWCPTCRAEHQYLNQLSAQ----GIRVVGMNYKDDRQ   93 (168)
T ss_dssp             CCCTTTTSBCCCCEEEESSSTTCEEEGGGGCCSSCEEEEEE-CTTCHHHHHHHHHHHHHHHT----TCCEEEEEESCCHH
T ss_pred             ccccccCCcCCCeEeecccCCCcEeehhHhcCCCEEEEEEE-CCCCHHHHHHHHHHHHHHHC----CCEEEEEECCCChH
Confidence            356789999999999999  9999999885 8999999999 99999999999999998765    799999996 4678


Q ss_pred             HHHHHHHHcCCCeE-EEEcCChhHHHHhCCCccCCCCCCccEEEEEcCCCcEEEEEeCCCCCC
Q 028030          141 SHKAFAKKYRLPYT-LLSDEGNKVRKEWGVPADFFGSLPGRQTYILDKNGVVQLIYNNQFQPE  202 (215)
Q Consensus       141 ~~~~~~~~~~~~~~-~~~d~~~~~~~~~g~~~~~~g~~p~~~~~lid~~G~v~~~~~g~~~~~  202 (215)
                      .+++|+++++++|+ ++.|.+..+.+.||+..     +|  ++|+||++|+|++.+.|..+.+
T Consensus        94 ~~~~~~~~~~~~~~~~~~d~~~~~~~~~~v~~-----~P--~~~lid~~G~i~~~~~g~~~~~  149 (168)
T 2b1k_A           94 KAISWLKELGNPYALSLFDGDGMLGLDLGVYG-----AP--ETFLIDGNGIIRYRHAGDLNPR  149 (168)
T ss_dssp             HHHHHHHHHCCCCSEEEEETTCHHHHHHTCCS-----SS--EEEEECTTSBEEEEEESCCCHH
T ss_pred             HHHHHHHHcCCCCceeeECcchHHHHHcCccc-----cC--EEEEECCCCeEEEEEeCCCCHH
Confidence            89999999999988 56888999999999987     88  9999999999999998865443

>4hde_A SCO1/SENC family lipoprotein; structural genomics, the center for structural genomics of I diseases, csgid, niaid; HET: MSE; 1.32A {Bacillus anthracis}

Probab=99.93  E-value=1.1e-24  Score=166.43  Aligned_cols=130  Identities=19%  Similarity=0.300  Sum_probs=105.1

Q ss_pred             CCCCCCCCeEEeCCCCCeeecCCcCCCcEEEEEEcCCCCh-hhHHHHHHHHHHHHHHHHc--CcEEEEEeCC----CHHH
Q 028030           69 SKGQAPPSFTLKDQEGRNVSLSKFKGKPVVVYFYPADETP-GCTKQACAFRDSYEKFKKA--GAEVIGISGD----DSSS  141 (215)
Q Consensus        69 ~~g~~~P~f~l~~~~g~~~~l~~~~gk~~ll~f~~a~~C~-~C~~~~~~l~~l~~~~~~~--~v~vv~vs~d----~~~~  141 (215)
                      .+|.++|+|+|+|.+|+++++++++||++||+|| .+||+ +|..+++.|.++++++++.  ++++|+||+|    +++.
T Consensus         7 P~~~~~PdF~L~d~~G~~v~l~d~~Gk~vll~F~-~t~Cp~~Cp~~~~~l~~l~~~~~~~~~~v~~v~isvDp~~Dtp~~   85 (170)
T 4hde_A            7 PLNWDLETFQFTNQDGKPFGTKDLKGKVWVADFM-FTNCQTVCPPMTANMAKLQKMAKEEKLDVQFVSFSVDPDLDKPEN   85 (170)
T ss_dssp             CCCBCCCCCEEECTTSCEEEHHHHTTSCEEEEEE-CTTCSSSHHHHHHHHHHHHHHHHHTTCCCEEEEEESCTTTCCHHH
T ss_pred             CCCCcCCCcEEECCCCCEEeHHHhCCCEEEEEEE-CCCCCCcccHHHHHHHHHHHhhhcccccceeEeeecCcccccHHH
Confidence            4788999999999999999999999999999999 99996 7999999999999999875  4889999974    6799


Q ss_pred             HHHHHHHcCCC---eEEEEcCChh-H----HHHhCCCc---cCCCCCCccEEEEEcCCCcEEEEEeCCC
Q 028030          142 HKAFAKKYRLP---YTLLSDEGNK-V----RKEWGVPA---DFFGSLPGRQTYILDKNGVVQLIYNNQF  199 (215)
Q Consensus       142 ~~~~~~~~~~~---~~~~~d~~~~-~----~~~~g~~~---~~~g~~p~~~~~lid~~G~v~~~~~g~~  199 (215)
                      +++|+++++.+   |..+.+...+ +    ...|+...   +.+...+++++||||++|+|+..+.|..
T Consensus        86 l~~y~~~~~~~~~~~~~ltg~~~~~~~~~~~~~~~~~~~~~~~~~~~H~~~~~liD~~G~i~~~~~g~~  154 (170)
T 4hde_A           86 LKAFIQKFTEDTSNWNLLTGYSLEDITKFSKDNFQSLVDKPENGQVIHGTSFYLIDQNGKVMKKYSGIS  154 (170)
T ss_dssp             HHHHHTTTCSCCTTEEEEBCSCHHHHHHHHHHHHCCCCBCCTTSCCBCCCEEEEECTTSCEEEEEESSS
T ss_pred             HHHHHHHcCCCCCCceecCcccHHHHHHHHHhcccccccCCCCceEEeeeEEEEEcCCCeEEEEECCCC
Confidence            99999998864   6677654432 2    23344432   1233445569999999999999998743

>2k6v_A Putative cytochrome C oxidase assembly protein; thioredoxin fold, electron transfer protein, metal binding protein, electron transport; NMR {Thermus thermophilus}

Probab=99.93  E-value=2.6e-26  Score=174.34  Aligned_cols=138  Identities=25%  Similarity=0.405  Sum_probs=116.4

Q ss_pred             CCCCCCCCeEEeCCCCCeeecCCcCCCcEEEEEEcCCCChh-hHHHHHHHHHHHHHHHHc---CcEEEEEeCC----CHH
Q 028030           69 SKGQAPPSFTLKDQEGRNVSLSKFKGKPVVVYFYPADETPG-CTKQACAFRDSYEKFKKA---GAEVIGISGD----DSS  140 (215)
Q Consensus        69 ~~g~~~P~f~l~~~~g~~~~l~~~~gk~~ll~f~~a~~C~~-C~~~~~~l~~l~~~~~~~---~v~vv~vs~d----~~~  140 (215)
                      .+|+++|+|++.|.+| .+++++++||++||+|| ++||++ |+.+++.|++++++++++   +++||+|+.|    +++
T Consensus        11 ~~G~~~p~f~l~~~~g-~~~l~~~~gk~vll~f~-~~~C~~~C~~~~~~l~~~~~~~~~~~~~~v~vv~is~d~~~d~~~   88 (172)
T 2k6v_A           11 LLNPKPVDFALEGPQG-PVRLSQFQDKVVLLFFG-FTRCPDVCPTTLLALKRAYEKLPPKAQERVQVIFVSVDPERDPPE   88 (172)
T ss_dssp             EEEEEECCCEEECSSS-EEEGGGSTTSEEEEEEE-CTTCSSHHHHHHHHHHHHHTTSCHHHHTTEEEEEEESCTTTCCHH
T ss_pred             ccCCCCCCeEEEcCCC-CCcHHHhCCCEEEEEEE-CCCCcchhHHHHHHHHHHHHHhhhhccCCEEEEEEEECCCCCCHH
Confidence            4688899999999999 99999999999999999 999997 999999999999999875   7999999975    578


Q ss_pred             HHHHHHHHcCCCeEEEEcCC---hhHHHHhCCCcc--------CCC--CCCccEEEEEcCCCcEEEEEeCCCCCCccHHH
Q 028030          141 SHKAFAKKYRLPYTLLSDEG---NKVRKEWGVPAD--------FFG--SLPGRQTYILDKNGVVQLIYNNQFQPEKHIDE  207 (215)
Q Consensus       141 ~~~~~~~~~~~~~~~~~d~~---~~~~~~~g~~~~--------~~g--~~p~~~~~lid~~G~v~~~~~g~~~~~~~~~~  207 (215)
                      .+++|+++++.+|+++.|..   .++.+.||+...        .++  .+|  ++|||| +|+|++.+.|..  ....++
T Consensus        89 ~~~~~~~~~~~~~~~l~d~~~~~~~~~~~~gv~~~~~~~~~~~~~~i~~~P--~~~lid-~G~i~~~~~g~~--~~~~~~  163 (172)
T 2k6v_A           89 VADRYAKAFHPSFLGLSGSPEAVREAAQTFGVFYQKSQYRGPGEYLVDHTA--TTFVVK-EGRLVLLYSPDK--AEATDR  163 (172)
T ss_dssp             HHHHHHHHHCTTEEEECCCHHHHHHHHHHHTCCEEEEEEEETTEEEEEECC--CEEEEE-TTEEEEEECHHH--HTCHHH
T ss_pred             HHHHHHHHhCCCcEEEeCCHHHHHHHHHhcCeEEEeccCCCCCCceEecCC--EEEEEE-CCEEEEEECCCC--CCCHHH
Confidence            99999999999999999987   688999998521        111  256  999999 999999998753  113455


Q ss_pred             HHHHHh
Q 028030          208 TLKFLQ  213 (215)
Q Consensus       208 il~~l~  213 (215)
                      +++.|+
T Consensus       164 l~~~l~  169 (172)
T 2k6v_A          164 VVADLQ  169 (172)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            555554

>1kng_A Thiol:disulfide interchange protein CYCY; thioredoxin fold, cytochrome C maturation, atomic resolution oxidoreductase; 1.14A {Bradyrhizobium japonicum} SCOP: c.47.1.10

Probab=99.92  E-value=4e-25  Score=165.02  Aligned_cols=126  Identities=21%  Similarity=0.429  Sum_probs=109.8

Q ss_pred             ccCCCCCCCCCeEEeCCCC--------CeeecCCcCCCcEEEEEEcCCCChhhHHHHHHHHHHHHHHHHcCcEEEEEeCC
Q 028030           66 AKVSKGQAPPSFTLKDQEG--------RNVSLSKFKGKPVVVYFYPADETPGCTKQACAFRDSYEKFKKAGAEVIGISGD  137 (215)
Q Consensus        66 ~~~~~g~~~P~f~l~~~~g--------~~~~l~~~~gk~~ll~f~~a~~C~~C~~~~~~l~~l~~~~~~~~v~vv~vs~d  137 (215)
                      ..+.+|+++|+|++++.+|        +.+++++++||++||+|| ++||++|+.+++.|++++++   .++.+++|+.|
T Consensus         6 ~~~~~g~~~p~f~l~~~~g~~~~~~~~~~~~l~~~~gk~~ll~f~-~~~C~~C~~~~~~l~~l~~~---~~v~~v~v~~~   81 (156)
T 1kng_A            6 PSALIGRPAPQTALPPLEGLQADNVQVPGLDPAAFKGKVSLVNVW-ASWCVPCHDEAPLLTELGKD---KRFQLVGINYK   81 (156)
T ss_dssp             ------CBCCCCCBCCCTTCEETTEECCCBCGGGGTTSCEEEEEE-CTTCHHHHHHHHHHHHHTTC---TTSEEEEEEES
T ss_pred             hhHHhCCCCCCceeeeccCcccccccCceechHHhCCCEEEEEEE-cccCHhHHHHHHHHHHHHhc---CCeEEEEEECC
Confidence            4568999999999999999        999999999999999999 99999999999999999876   35999999974


Q ss_pred             -CHHHHHHHHHHcCCCeE-EEEcCChhHHHHhCCCccCCCCCCccEEEEEcCCCcEEEEEeCCCCCC
Q 028030          138 -DSSSHKAFAKKYRLPYT-LLSDEGNKVRKEWGVPADFFGSLPGRQTYILDKNGVVQLIYNNQFQPE  202 (215)
Q Consensus       138 -~~~~~~~~~~~~~~~~~-~~~d~~~~~~~~~g~~~~~~g~~p~~~~~lid~~G~v~~~~~g~~~~~  202 (215)
                       +.+.+++|+++++++|+ +..|....+.+.|++..     +|  ++++||++|+|+..+.|..+.+
T Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~v~~-----~P--~~~~id~~G~i~~~~~g~~~~~  141 (156)
T 1kng_A           82 DAADNARRFLGRYGNPFGRVGVDANGRASIEWGVYG-----VP--ETFVVGREGTIVYKLVGPITPD  141 (156)
T ss_dssp             CCHHHHHHHHHHHCCCCSEEEEETTSHHHHHTTCCS-----SC--EEEEECTTSBEEEEEESCCCHH
T ss_pred             CCHHHHHHHHHHcCCCCceeeeCchhHHHHhcCcCc-----cC--eEEEEcCCCCEEEEEeCCCCHH
Confidence             67899999999999998 78899999999999987     88  9999999999999998865443

>2h30_A Thioredoxin, peptide methionine sulfoxide reductase MSRA/MSRB; reduced, thiol-disulfide exchange, oxidoreductase; 1.60A {Neisseria gonorrhoeae} PDB: 2jzr_A 2jzs_A 2k9f_A 2fy6_A

Probab=99.91  E-value=4.6e-25  Score=166.14  Aligned_cols=120  Identities=19%  Similarity=0.322  Sum_probs=108.8

Q ss_pred             CCCCCCCeEEeCCCCCeeecCCcCCCcEEEEEEcCCCChhhHHHHHHHHHHHHHHHHcCcEEEEEeCC------CHHHHH
Q 028030           70 KGQAPPSFTLKDQEGRNVSLSKFKGKPVVVYFYPADETPGCTKQACAFRDSYEKFKKAGAEVIGISGD------DSSSHK  143 (215)
Q Consensus        70 ~g~~~P~f~l~~~~g~~~~l~~~~gk~~ll~f~~a~~C~~C~~~~~~l~~l~~~~~~~~v~vv~vs~d------~~~~~~  143 (215)
                      +|+.+|  ++.+.+|+.+++++++||++||+|| ++||++|+.++|.|++++++|+..+++||+|+.|      +.+.++
T Consensus        16 ~~~~~p--~l~~~~g~~~~~~~~~gk~vlv~F~-a~~C~~C~~~~~~l~~l~~~~~~~~~~vv~v~~~~~~~~~~~~~~~   92 (164)
T 2h30_A           16 VPHTMS--TMKTADNRPASVYLKKDKPTLIKFW-ASWCPLCLSELGQAEKWAQDAKFSSANLITVASPGFLHEKKDGEFQ   92 (164)
T ss_dssp             HHHHHT--TCEETTSSBGGGGCCTTSCEEEEEC-CTTCHHHHHHHHHHHHHHTCGGGTTSEEEEEECTTSTTCCCTTHHH
T ss_pred             cCCcCC--ccCCCCCCEeeHHHhCCCEEEEEEE-CCCCHHHHHHHHHHHHHHHHcccCCcEEEEEEcCCCccccCHHHHH
Confidence            445555  7889999999999999999999999 9999999999999999999998889999999974      457889


Q ss_pred             HHHHHcCCC-eEEEEcCChhHHHHhCCCccCCCCCCccEEEEEcCCCcEEEEEeCCC
Q 028030          144 AFAKKYRLP-YTLLSDEGNKVRKEWGVPADFFGSLPGRQTYILDKNGVVQLIYNNQF  199 (215)
Q Consensus       144 ~~~~~~~~~-~~~~~d~~~~~~~~~g~~~~~~g~~p~~~~~lid~~G~v~~~~~g~~  199 (215)
                      +|+++++++ +++..|.+.++.+.|++..     +|  ++++||++|+|++.+.|..
T Consensus        93 ~~~~~~~~~~~~~~~d~~~~~~~~~~v~~-----~P--~~~lid~~G~i~~~~~g~~  142 (164)
T 2h30_A           93 KWYAGLNYPKLPVVTDNGGTIAQNLNISV-----YP--SWALIGKDGDVQRIVKGSI  142 (164)
T ss_dssp             HHHTTSCCTTSCEEECTTCHHHHHTTCCS-----SS--EEEEECTTSCEEEEEESCC
T ss_pred             HHHHhCCCCcceEEEcCchHHHHHcCCCc-----cc--eEEEECCCCcEEEEEcCCC
Confidence            999998998 8999999999999999987     89  9999999999999998854

>1i5g_A Tryparedoxin II; electron transport; HET: TS5; 1.40A {Crithidia fasciculata} SCOP: c.47.1.10 PDB: 1o6j_A 1o81_A 1oc8_A 1oc9_B 1fg4_A 1oc9_A

Probab=99.91  E-value=1.8e-24  Score=159.80  Aligned_cols=120  Identities=18%  Similarity=0.212  Sum_probs=106.8

Q ss_pred             CCCCCCC-eEEeCCCCCeeecCCcCCCcEEEEEEcCCCChhhHHHHHHHHHHHHHHHH-cCcEEEEEeCC-CHHHHHHHH
Q 028030           70 KGQAPPS-FTLKDQEGRNVSLSKFKGKPVVVYFYPADETPGCTKQACAFRDSYEKFKK-AGAEVIGISGD-DSSSHKAFA  146 (215)
Q Consensus        70 ~g~~~P~-f~l~~~~g~~~~l~~~~gk~~ll~f~~a~~C~~C~~~~~~l~~l~~~~~~-~~v~vv~vs~d-~~~~~~~~~  146 (215)
                      +|+.+|+ |++.+.+|+.+++++++||++||+|| ++||++|+.+++.|+++++++++ .+++|++|+.| +.+.+++|+
T Consensus         3 ~~~~~P~~f~l~~~~g~~~~l~~~~gk~vll~F~-a~wC~~C~~~~~~l~~l~~~~~~~~~~~vv~v~~d~~~~~~~~~~   81 (144)
T 1i5g_A            3 LKKFFPYSTNVLKGAAADIALPSLAGKTVFFYFS-ASWCPPSRAFTPQLIDFYKAHAEKKNFEVMLISWDESAEDFKDYY   81 (144)
T ss_dssp             TTTSCSSCSEEEETTEEEEEGGGGTTSEEEEEEE-CTTCHHHHHHHHHHHHHHHHHTTTTTEEEEEEECCSSHHHHHHHH
T ss_pred             hhhhCCCceEEEcCCCCEecHHHcCCCEEEEEEE-CCCCHHHHHHHHHHHHHHHHhccCCCEEEEEEeCCCCHHHHHHHH
Confidence            5789999 99999999999999999999999999 99999999999999999999985 58999999998 578999999


Q ss_pred             HHcCC-CeEEEE-cCChhHHHHhCCCccCCCCCCccEEEEEc-CCCcEEEEEeC
Q 028030          147 KKYRL-PYTLLS-DEGNKVRKEWGVPADFFGSLPGRQTYILD-KNGVVQLIYNN  197 (215)
Q Consensus       147 ~~~~~-~~~~~~-d~~~~~~~~~g~~~~~~g~~p~~~~~lid-~~G~v~~~~~g  197 (215)
                      +++++ .+++.. |....+.+.|++..     +|  +++||| ++|+|+....+
T Consensus        82 ~~~~~~~~~~~~~d~~~~~~~~~~v~~-----~P--~~~lid~~~G~i~~~~~~  128 (144)
T 1i5g_A           82 AKMPWLALPFEDRKGMEFLTTGFDVKS-----IP--TLVGVEADSGNIITTQAR  128 (144)
T ss_dssp             TTCSSEECCTTCHHHHHHHHHHTTCCS-----SS--EEEEEETTTCCEEESCHH
T ss_pred             HhCCccccccCchHHHHHHHHHcCCCC-----CC--EEEEEECCCCcEEeccch
Confidence            99875 355544 55678999999987     89  999999 99999987643

>1o8x_A Tryparedoxin, TRYX, TXNI; tryparedoxin-I, synchrotron radiation, disulfide bonds tryparedoxin, thioredoxin, trypanosome; 1.3A {Crithidia fasciculata} SCOP: c.47.1.10 PDB: 1okd_A 1qk8_A 1o85_A 1o8w_A 1o7u_A 1ezk_A 1ewx_A

Probab=99.90  E-value=1.2e-23  Score=155.89  Aligned_cols=120  Identities=21%  Similarity=0.302  Sum_probs=105.8

Q ss_pred             CCCCCCCC-eEEeCCCCCeeecCCcCCCcEEEEEEcCCCChhhHHHHHHHHHHHHHHHH-cCcEEEEEeCC-CHHHHHHH
Q 028030           69 SKGQAPPS-FTLKDQEGRNVSLSKFKGKPVVVYFYPADETPGCTKQACAFRDSYEKFKK-AGAEVIGISGD-DSSSHKAF  145 (215)
Q Consensus        69 ~~g~~~P~-f~l~~~~g~~~~l~~~~gk~~ll~f~~a~~C~~C~~~~~~l~~l~~~~~~-~~v~vv~vs~d-~~~~~~~~  145 (215)
                      ..|+.+|+ |++.+.+| .+++++++||++||+|| ++||++|+.+++.|+++++++++ .+++|++|+.| +.+.+++|
T Consensus         3 ~~~~~~P~~f~l~~~~g-~~~l~~~~gk~vll~F~-a~wC~~C~~~~p~l~~l~~~~~~~~~~~vv~v~~d~~~~~~~~~   80 (146)
T 1o8x_A            3 GLDKYLPGIEKLRRGDG-EVEVKSLAGKLVFFYFS-ASWCPPARGFTPQLIEFYDKFHESKNFEVVFCTWDEEEDGFAGY   80 (146)
T ss_dssp             CGGGTSTTCCEEEETTE-EEEGGGGTTCEEEEEEE-CTTCHHHHHHHHHHHHHHHHHTTTTTEEEEEEECCCSHHHHHHH
T ss_pred             chHhhCCCceEEEcCCC-CCcHHHhCCCEEEEEEE-ccCCHHHHHHHHHHHHHHHHhhhcCCeEEEEEeCCCCHHHHHHH
Confidence            46789999 99999999 99999999999999999 99999999999999999999984 58999999998 56889999


Q ss_pred             HHHcCC-CeEEEE-cCChhHHHHhCCCccCCCCCCccEEEEEc-CCCcEEEEEeC
Q 028030          146 AKKYRL-PYTLLS-DEGNKVRKEWGVPADFFGSLPGRQTYILD-KNGVVQLIYNN  197 (215)
Q Consensus       146 ~~~~~~-~~~~~~-d~~~~~~~~~g~~~~~~g~~p~~~~~lid-~~G~v~~~~~g  197 (215)
                      ++++++ .+++.. |....+.+.|++..     +|  ++++|| ++|+|+....+
T Consensus        81 ~~~~~~~~~~~~~~d~~~~~~~~~~v~~-----~P--t~~lid~~~G~i~~~~~~  128 (146)
T 1o8x_A           81 FAKMPWLAVPFAQSEAVQKLSKHFNVES-----IP--TLIGVDADSGDVVTTRAR  128 (146)
T ss_dssp             HTTCSSEECCGGGHHHHHHHHHHTTCCS-----SS--EEEEEETTTCCEEESCHH
T ss_pred             HHHCCceeeccchhhHHHHHHHHhCCCC-----CC--EEEEEECCCCeEEEecch
Confidence            998875 355443 55678999999987     89  999999 99999987654

>3s9f_A Tryparedoxin; thioredoxin fold, disulfide reductase, electron transport; 1.80A {Leishmania major}

Probab=99.88  E-value=5.6e-24  Score=161.46  Aligned_cols=122  Identities=20%  Similarity=0.268  Sum_probs=105.2

Q ss_pred             cCCCCCCCCCe-EEeCCCCCeeecCCcCCCcEEEEEEcCCCChhhHHHHHHHHHHHHHHHH-cCcEEEEEeCCCH-HHHH
Q 028030           67 KVSKGQAPPSF-TLKDQEGRNVSLSKFKGKPVVVYFYPADETPGCTKQACAFRDSYEKFKK-AGAEVIGISGDDS-SSHK  143 (215)
Q Consensus        67 ~~~~g~~~P~f-~l~~~~g~~~~l~~~~gk~~ll~f~~a~~C~~C~~~~~~l~~l~~~~~~-~~v~vv~vs~d~~-~~~~  143 (215)
                      ...+|+++|+| ++.+.+| .+++++++||++||+|| ++||++|+.++|.|.+++++|++ .+++||+|+.|+. +.++
T Consensus        21 ~~~vG~~~P~f~~l~~~~g-~v~l~~~~gk~vll~F~-a~wC~~C~~~~p~l~~l~~~~~~~~~v~vv~v~~d~~~~~~~   98 (165)
T 3s9f_A           21 MSGVAKHLGEALKLRKQAD-TADMDSLSGKTVFFYFS-ASWCPPCRGFTPQLVEFYEKHHDSKNFEIILASWDEEEDDFN   98 (165)
T ss_dssp             -CHHHHHHHHTSCEEETTE-EECSGGGTTSEEEEEEE-CTTCHHHHHHHHHHHHHHHHHTTTTTEEEEEEECCCSHHHHH
T ss_pred             hhhhcccCCcceeeecCCC-cccHHHcCCCEEEEEEE-CCcChhHHHHHHHHHHHHHHhccCCCeEEEEEecCCCHHHHH
Confidence            34588999999 9999999 99999999999999999 99999999999999999999986 5899999999764 7899


Q ss_pred             HHHHHcCCC-eEEEEcC-ChhHHHHhCCCccCCCCCCccEEEEEcCC-CcEEEEEeC
Q 028030          144 AFAKKYRLP-YTLLSDE-GNKVRKEWGVPADFFGSLPGRQTYILDKN-GVVQLIYNN  197 (215)
Q Consensus       144 ~~~~~~~~~-~~~~~d~-~~~~~~~~g~~~~~~g~~p~~~~~lid~~-G~v~~~~~g  197 (215)
                      +|++++++. +++..+. ..++.+.|++..     +|  +++|||++ |+|+....+
T Consensus        99 ~~~~~~~~~~~~~~~~~~~~~l~~~~~v~~-----~P--t~~lid~~~G~iv~~~~~  148 (165)
T 3s9f_A           99 AYYAKMPWLSIPFANRNIVEALTKKYSVES-----IP--TLIGLNADTGDTVTTRAR  148 (165)
T ss_dssp             HHHTTCSSEECCTTCHHHHHHHHHHTTCCS-----SS--EEEEEETTTCCEEESCHH
T ss_pred             HHHHhCCCcccccCchhHHHHHHHHcCCCC-----CC--EEEEEeCCCCEEEecccH
Confidence            999987653 3433333 378999999987     89  99999998 999987543

>1o73_A Tryparedoxin; electron transport, trypanosomatid, thioredoxin; 2.28A {Trypanosoma brucei brucei} SCOP: c.47.1.10

Probab=99.88  E-value=4e-23  Score=152.31  Aligned_cols=120  Identities=24%  Similarity=0.349  Sum_probs=104.1

Q ss_pred             CCCCCCCCe-EEeCCCCCeeecCCcCCCcEEEEEEcCCCChhhHHHHHHHHHHHHHHH-HcCcEEEEEeCCC-HHHHHHH
Q 028030           69 SKGQAPPSF-TLKDQEGRNVSLSKFKGKPVVVYFYPADETPGCTKQACAFRDSYEKFK-KAGAEVIGISGDD-SSSHKAF  145 (215)
Q Consensus        69 ~~g~~~P~f-~l~~~~g~~~~l~~~~gk~~ll~f~~a~~C~~C~~~~~~l~~l~~~~~-~~~v~vv~vs~d~-~~~~~~~  145 (215)
                      .+|+.+|+| ++.+.+| .+++++++||++||+|| ++||++|+.+++.|++++++++ +.++++++|+.|+ .+.+++|
T Consensus         3 ~~g~~~p~~~~l~~~~g-~~~l~~~~gk~vll~F~-a~wC~~C~~~~~~l~~l~~~~~~~~~~~vv~i~~d~~~~~~~~~   80 (144)
T 1o73_A            3 GLAKYLPGATNLLSKSG-EVSLGSLVGKTVFLYFS-ASWCPPCRGFTPVLAEFYEKHHVAKNFEVVLISWDENESDFHDY   80 (144)
T ss_dssp             GGGGTSCTTCCBBCTTS-CBCSGGGTTCEEEEEEE-CTTCHHHHHHHHHHHHHHHHHTTTTTEEEEEEECCSSHHHHHHH
T ss_pred             chhhhCccceEeecCCC-cCcHHHhCCCEEEEEEE-CcCCHHHHHHHHHHHHHHHHhccCCCEEEEEEeCCCCHHHHHHH
Confidence            468899997 9999999 99999999999999999 9999999999999999999998 3589999999985 5788999


Q ss_pred             HHHcCCC-eEEEE-cCChhHHHHhCCCccCCCCCCccEEEEEc-CCCcEEEEEeC
Q 028030          146 AKKYRLP-YTLLS-DEGNKVRKEWGVPADFFGSLPGRQTYILD-KNGVVQLIYNN  197 (215)
Q Consensus       146 ~~~~~~~-~~~~~-d~~~~~~~~~g~~~~~~g~~p~~~~~lid-~~G~v~~~~~g  197 (215)
                      ++++++. +++.. |....+.+.|++..     +|  +++++| ++|+|+....+
T Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~-----~P--t~~lid~~~G~i~~~~~~  128 (144)
T 1o73_A           81 YGKMPWLALPFDQRSTVSELGKTFGVES-----IP--TLITINADTGAIIGTQAR  128 (144)
T ss_dssp             HTTCSSEECCTTCHHHHHHHHHHHTCCS-----SS--EEEEEETTTCCEEESCHH
T ss_pred             HHhCCceEeeccchhHHHHHHHHcCCCC-----CC--EEEEEECCCCeEEecchh
Confidence            9887642 34333 45678999999987     89  999999 89999987643

>2lus_A Thioredoxion; CR-Trp16, oxidoreductase; NMR {Carcinoscorpius rotundicauda}

Probab=99.80  E-value=2.6e-24  Score=158.27  Aligned_cols=118  Identities=19%  Similarity=0.311  Sum_probs=104.6

Q ss_pred             CCCCCeEEeCCCCCeeecCC-cCCC-cEEEEEEcCCCChhhHHHHHHHHHHHHHHHH--cCcEEEEEeCC-CHHHHHHHH
Q 028030           72 QAPPSFTLKDQEGRNVSLSK-FKGK-PVVVYFYPADETPGCTKQACAFRDSYEKFKK--AGAEVIGISGD-DSSSHKAFA  146 (215)
Q Consensus        72 ~~~P~f~l~~~~g~~~~l~~-~~gk-~~ll~f~~a~~C~~C~~~~~~l~~l~~~~~~--~~v~vv~vs~d-~~~~~~~~~  146 (215)
                      +.+|+|++.+.+|+.+++++ ++|| ++||+|| ++||++|+.+++.|+++++++++  .++.+++|+.| +++.+++|+
T Consensus         2 ~~~p~~~l~~~~g~~~~l~~~~~gk~~vll~F~-a~wC~~C~~~~~~l~~~~~~~~~~~~~~~v~~v~~d~~~~~~~~~~   80 (143)
T 2lus_A            2 EFIQGIKLVKKNRCEVNANEALKDKDIIGFYFS-AHWCPPCRGFTPILADMYSELVDDSAPFEIIFVSSDRSEDDMFQYM   80 (143)
Confidence            46899999999999999999 8999 9999999 99999999999999999999953  47999999997 457899999


Q ss_pred             HHcCCCeEEE---EcCChhHHHHhCCCccCCCCCCccEEEEEcCCCcEEEEEeC
Q 028030          147 KKYRLPYTLL---SDEGNKVRKEWGVPADFFGSLPGRQTYILDKNGVVQLIYNN  197 (215)
Q Consensus       147 ~~~~~~~~~~---~d~~~~~~~~~g~~~~~~g~~p~~~~~lid~~G~v~~~~~g  197 (215)
                      ++++++|+.+   .|...++.+.|++..     +|  ++++||++|+|++....
T Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~-----~P--~~~lid~~G~i~~~~~~  127 (143)
T 2lus_A           81 MESHGDWLAIPYRSGPASNVTAKYGITG-----IP--ALVIVKKDGTLISMNGR  127 (143)
Confidence            9999886643   466678999999987     88  99999999999988644

>2l57_A Uncharacterized protein; structural genomics, unknown function, thioredoxin-like, PSI protein structure initiative; NMR {Clostridium perfringens}

Probab=99.70  E-value=3.5e-17  Score=117.93  Aligned_cols=100  Identities=12%  Similarity=0.175  Sum_probs=81.4

Q ss_pred             CCCCCeEEeCCCCCeeecCCcCCCcEEEEEEcCCCChhhHHHHHHHHHHHHHHHHcCcEEEEEeCCCHHHHHHHHHHcCC
Q 028030           72 QAPPSFTLKDQEGRNVSLSKFKGKPVVVYFYPADETPGCTKQACAFRDSYEKFKKAGAEVIGISGDDSSSHKAFAKKYRL  151 (215)
Q Consensus        72 ~~~P~f~l~~~~g~~~~l~~~~gk~~ll~f~~a~~C~~C~~~~~~l~~l~~~~~~~~v~vv~vs~d~~~~~~~~~~~~~~  151 (215)
                      +.+++++..+.+|+.......+||++||+|| ++||++|+...+.+.+++++++ .++.++.|+.|              
T Consensus         4 ~~~~~l~~~~~~~~~~~~~~~~~k~~lv~f~-a~wC~~C~~~~~~l~~~~~~~~-~~v~~~~v~~~--------------   67 (126)
T 2l57_A            4 EGIKQINFQSINVVENLEEAKEGIPTIIMFK-TDTCPYCVEMQKELSYVSKERE-GKFNIYYARLE--------------   67 (126)
T ss_dssp             CCSSCTTTTCCSEESSTTTCCSSSCEEEEEE-CSSCHHHHHHHHHHHHHHHHSS-SSCEEEEEETT--------------
T ss_pred             cccCCCCccccchhHHHHHHhCCCcEEEEEE-CCCCccHHHHHHHHHHHHHHhc-CCeEEEEEeCC--------------
Confidence            3456666666676654455567899999999 9999999999999999999987 46999999954              


Q ss_pred             CeEEEEcCChhHHHHhCCCccCCCCCCccEEEEEcCCCcEEEEEeCCC
Q 028030          152 PYTLLSDEGNKVRKEWGVPADFFGSLPGRQTYILDKNGVVQLIYNNQF  199 (215)
Q Consensus       152 ~~~~~~d~~~~~~~~~g~~~~~~g~~p~~~~~lid~~G~v~~~~~g~~  199 (215)
                           .|.+.++.+.|++..     +|  +++++|++|+++..+.|..
T Consensus        68 -----~d~~~~~~~~~~v~~-----~P--t~~~~~~~G~~~~~~~G~~  103 (126)
T 2l57_A           68 -----EEKNIDLAYKYDANI-----VP--TTVFLDKEGNKFYVHQGLM  103 (126)
T ss_dssp             -----SSHHHHHHHHTTCCS-----SS--EEEEECTTCCEEEEEESCC
T ss_pred             -----CCchHHHHHHcCCcc-----ee--EEEEECCCCCEEEEecCCC
Confidence                 233456888899987     89  9999999999999998854

>2ju5_A Thioredoxin disulfide isomerase; protein, oxidoreductase; NMR {Chlamydophila pneumoniae}

Probab=99.67  E-value=2.4e-17  Score=123.40  Aligned_cols=109  Identities=13%  Similarity=0.156  Sum_probs=84.2

Q ss_pred             CCCCCCCCeEEeCCCCCeeecCCcCCCcEEEEEEcCCCChhhHHHHHHH---HHHHHHHHHcCcEEEEEeCCCHHHHHHH
Q 028030           69 SKGQAPPSFTLKDQEGRNVSLSKFKGKPVVVYFYPADETPGCTKQACAF---RDSYEKFKKAGAEVIGISGDDSSSHKAF  145 (215)
Q Consensus        69 ~~g~~~P~f~l~~~~g~~~~l~~~~gk~~ll~f~~a~~C~~C~~~~~~l---~~l~~~~~~~~v~vv~vs~d~~~~~~~~  145 (215)
                      ..+...+++   +..|+.+++++.+||++||+||.++||++|+.+.|.|   .++.+.+.. ++.++.|+.++..     
T Consensus        25 ~~~~~~~~~---~~~~~~~~~a~~~gk~vlv~F~ga~wC~~C~~~~p~l~~~~~~~~~~~~-~~~~v~vd~~~~~-----   95 (154)
T 2ju5_A           25 PIAAANLQW---ESYAEALEHSKQDHKPIGLFFTGSDWCMWCIKMQDQILQSSEFKHFAGV-HLHMVEVDFPQKN-----   95 (154)
T ss_dssp             SSCCCCCCE---ECHHHHHHHHHHHCCCEEEEEECTTTCHHHHHHHHHTTTSHHHHHHHHH-HCEEEEEECCSSC-----
T ss_pred             hcccCCCCC---CCHHHHHHHHHhCCCeEEEEEeCCCCCHhHHHHHHHHhcCHHHHHHhcC-cEEEEEecCcccc-----
Confidence            445555666   4456777888888999999999779999999999999   777655543 5999999886543     


Q ss_pred             HHHcCCCeEEEEcCChhHHHHhCCCccCCCCCCccEEEEEcCCCcEEEEEeCCC
Q 028030          146 AKKYRLPYTLLSDEGNKVRKEWGVPADFFGSLPGRQTYILDKNGVVQLIYNNQF  199 (215)
Q Consensus       146 ~~~~~~~~~~~~d~~~~~~~~~g~~~~~~g~~p~~~~~lid~~G~v~~~~~g~~  199 (215)
                          +++++ +.|.+.++.+.|++..     +|  +++++|++|+++..+ |..
T Consensus        96 ----~~~~~-~~~~~~~l~~~~~v~~-----~P--t~~~~d~~G~~~~~~-G~~  136 (154)
T 2ju5_A           96 ----HQPEE-QRQKNQELKAQYKVTG-----FP--ELVFIDAEGKQLARM-GFE  136 (154)
T ss_dssp             ----CCCHH-HHHHHHHHHHHTTCCS-----SS--EEEEECTTCCEEEEE-CCC
T ss_pred             ----CCChh-hHhhHHHHHHHcCCCC-----CC--EEEEEcCCCCEEEEe-cCC
Confidence                12322 1355678899999987     89  999999999999998 754

>2fwh_A Thiol:disulfide interchange protein DSBD; thioredoxin-like, C-terminal domain, reduced form at PH7, oxidoreductase; 0.99A {Escherichia coli} SCOP: c.47.1.1 PDB: 2fwe_A 2fwf_A 2fwg_A 1vrs_D 1uc7_A

Probab=99.66  E-value=1.7e-17  Score=121.16  Aligned_cols=117  Identities=19%  Similarity=0.241  Sum_probs=87.1

Q ss_pred             CCCCCCCCCeE-EeCCCCCeeecCCcCCCcEEEEEEcCCCChhhHHHHHHH---HHHHHHHHHcCcEEEEEeCCCHHHHH
Q 028030           68 VSKGQAPPSFT-LKDQEGRNVSLSKFKGKPVVVYFYPADETPGCTKQACAF---RDSYEKFKKAGAEVIGISGDDSSSHK  143 (215)
Q Consensus        68 ~~~g~~~P~f~-l~~~~g~~~~l~~~~gk~~ll~f~~a~~C~~C~~~~~~l---~~l~~~~~~~~v~vv~vs~d~~~~~~  143 (215)
                      ...|...|+|. +.+.++....+++.+||++||+|| ++||++|+...+.+   .+++++++  ++.++.|+.++..   
T Consensus         4 ~~~~~~~~~f~~~~~~~~~~~~l~~~~~k~vlv~F~-a~wC~~C~~~~~~~~~~~~l~~~~~--~~~~~~vd~~~~~---   77 (134)
T 2fwh_A            4 TAQTQTHLNFTQIKTVDELNQALVEAKGKPVMLDLY-ADWCVACKEFEKYTFSDPQVQKALA--DTVLLQANVTAND---   77 (134)
T ss_dssp             ------CCCCEECCSHHHHHHHHHHHTTSCEEEEEE-CTTCHHHHHHHHHTTTSHHHHHHTT--TSEEEEEECTTCC---
T ss_pred             ccccccCCCcEEecCHHHHHHHHHHhcCCcEEEEEE-CCCCHHHHHHHHHhcCCHHHHHHhc--CcEEEEEeCCCCc---
Confidence            35678899998 666777667777778999999999 99999999999988   88888876  5999999886531   


Q ss_pred             HHHHHcCCCeEEEEcCChhHHHHhCCCccCCCCCCccEEEEEcCCCcEE--EEEeCCCCCCccHHHHHHHH
Q 028030          144 AFAKKYRLPYTLLSDEGNKVRKEWGVPADFFGSLPGRQTYILDKNGVVQ--LIYNNQFQPEKHIDETLKFL  212 (215)
Q Consensus       144 ~~~~~~~~~~~~~~d~~~~~~~~~g~~~~~~g~~p~~~~~lid~~G~v~--~~~~g~~~~~~~~~~il~~l  212 (215)
                                    |...++.+.|++..     +|  +++++|++|+++  ..+.|..+ .+.+.+.++.+
T Consensus        78 --------------~~~~~l~~~~~v~~-----~P--t~~~~d~~G~~v~~~~~~G~~~-~~~l~~~l~~~  126 (134)
T 2fwh_A           78 --------------AQDVALLKHLNVLG-----LP--TILFFDGQGQEHPQARVTGFMD-AETFSAHLRDR  126 (134)
T ss_dssp             --------------HHHHHHHHHTTCCS-----SS--EEEEECTTSCBCGGGCBCSCCC-HHHHHHHHHHC
T ss_pred             --------------chHHHHHHHcCCCC-----CC--EEEEECCCCCEeeeeeeeeccC-HHHHHHHHHhc
Confidence                          23456788899887     89  999999999998  67777543 33444454443

>3hxs_A Thioredoxin, TRXP; electron transport; 2.00A {Bacteroides fragilis} PDB: 3hyp_A

Probab=99.64  E-value=8.8e-16  Score=112.55  Aligned_cols=91  Identities=18%  Similarity=0.354  Sum_probs=77.9

Q ss_pred             EeCCCCCeeecCCcCCCcEEEEEEcCCCChhhHHHHHHHHHHHHHHHHcCcEEEEEeCCCHHHHHHHHHHcCCCeEEEEc
Q 028030           79 LKDQEGRNVSLSKFKGKPVVVYFYPADETPGCTKQACAFRDSYEKFKKAGAEVIGISGDDSSSHKAFAKKYRLPYTLLSD  158 (215)
Q Consensus        79 l~~~~g~~~~l~~~~gk~~ll~f~~a~~C~~C~~~~~~l~~l~~~~~~~~v~vv~vs~d~~~~~~~~~~~~~~~~~~~~d  158 (215)
                      +.+.+|....+++++||++||+|| ++||++|+...|.+.++++++++ .+.++.|..|.                    
T Consensus        36 l~~~~~~~~~l~~~~~k~vlv~f~-a~wC~~C~~~~~~~~~~~~~~~~-~~~~~~v~~~~--------------------   93 (141)
T 3hxs_A           36 IADYENHSKEWKYLGDKPAIVDFY-ADWCGPCKMVAPILEELSKEYAG-KIYIYKVNVDK--------------------   93 (141)
T ss_dssp             TCCCSSCCCCCCCCCSSCEEEEEE-CTTCTTHHHHHHHHHHHHHHTTT-TCEEEEEETTT--------------------
T ss_pred             hhccccchhHHHHhCCCEEEEEEE-CCCCHHHHHHHHHHHHHHHHhcC-ceEEEEEECCC--------------------
Confidence            356778888999999999999999 99999999999999999999986 48998888643                    


Q ss_pred             CChhHHHHhCCCccCCCCCCccEEEEEcCCCcEEEEEeCCCC
Q 028030          159 EGNKVRKEWGVPADFFGSLPGRQTYILDKNGVVQLIYNNQFQ  200 (215)
Q Consensus       159 ~~~~~~~~~g~~~~~~g~~p~~~~~lid~~G~v~~~~~g~~~  200 (215)
                       +.++.+.|++..     +|  +++++|++|+++ .+.|..+
T Consensus        94 -~~~~~~~~~v~~-----~P--t~~~~~~~g~~~-~~~G~~~  126 (141)
T 3hxs_A           94 -EPELARDFGIQS-----IP--TIWFVPMKGEPQ-VNMGALS  126 (141)
T ss_dssp             -CHHHHHHTTCCS-----SS--EEEEECSSSCCE-EEESCCC
T ss_pred             -CHHHHHHcCCCC-----cC--EEEEEeCCCCEE-EEeCCCC
Confidence             456888899987     89  999999999997 6677543

>3ul3_B Thioredoxin, thioredoxin-2; PTEX, oxidoreductase; 2.90A {Plasmodium falciparum}

Probab=99.63  E-value=3.6e-15  Score=107.78  Aligned_cols=108  Identities=16%  Similarity=0.303  Sum_probs=82.6

Q ss_pred             CCCCCCCeEEeCCCCCeeecCCcCCCcEEEEEEcCCCChhhHHHHHHHHHHHHHHHHcCcEEEEEeCCCHHHHHHHHHHc
Q 028030           70 KGQAPPSFTLKDQEGRNVSLSKFKGKPVVVYFYPADETPGCTKQACAFRDSYEKFKKAGAEVIGISGDDSSSHKAFAKKY  149 (215)
Q Consensus        70 ~g~~~P~f~l~~~~g~~~~l~~~~gk~~ll~f~~a~~C~~C~~~~~~l~~l~~~~~~~~v~vv~vs~d~~~~~~~~~~~~  149 (215)
                      ...++|+++  +.+++.++....+||++||+|| ++||++|+...|.+.++++++++ ++.++.|+.|            
T Consensus        20 ~~~~~~~~~--~~~~~~~~~~~~~~k~vlv~F~-a~wC~~C~~~~p~l~~~~~~~~~-~v~~~~vd~d------------   83 (128)
T 3ul3_B           20 MFKKVPRLQ--QNGSNIINGVNMKNTVIVLYFF-AKWCQACTMQSTEMDKLQKYYGK-RIYLLKVDLD------------   83 (128)
T ss_dssp             ------CCC--CCCCSSSSBTTSCCSEEEEEEE-CTTCHHHHHHHHHHHHHHHHHGG-GEEEEEEEGG------------
T ss_pred             HhccCCccc--cCCccHHHHHHccCCEEEEEEE-CCCCHHHHHHhHHHHHHHHHhcC-CeEEEEEECC------------
Confidence            445666666  5566666777778999999999 99999999999999999999985 4899998753            


Q ss_pred             CCCeEEEEcCChhHHHHhCCCccCCCCCCccEEEEEcCCCcEEEEEeCCCCCCccHHHHHHHHhc
Q 028030          150 RLPYTLLSDEGNKVRKEWGVPADFFGSLPGRQTYILDKNGVVQLIYNNQFQPEKHIDETLKFLQS  214 (215)
Q Consensus       150 ~~~~~~~~d~~~~~~~~~g~~~~~~g~~p~~~~~lid~~G~v~~~~~g~~~~~~~~~~il~~l~~  214 (215)
                               .+.++.+.|++..     +|  +++++ ++|+++..+.|..    ..+++.+.|++
T Consensus        84 ---------~~~~l~~~~~v~~-----~P--t~~~~-~~G~~~~~~~G~~----~~~~l~~~l~~  127 (128)
T 3ul3_B           84 ---------KNESLARKFSVKS-----LP--TIILL-KNKTMLARKDHFV----SSNDLIALIKK  127 (128)
T ss_dssp             ---------GCHHHHHHTTCCS-----SS--EEEEE-ETTEEEEEESSCC----CHHHHHHHHTT
T ss_pred             ---------CCHHHHHHcCCCC-----cC--EEEEE-ECCEEEEEecCCC----CHHHHHHHHHh
Confidence                     3457888999987     99  88888 7999999988843    34566666654

>3fk8_A Disulphide isomerase; APC61824.1, xylella fastidiosa temecul structural genomics, PSI-2, protein structure initiative; 1.30A {Xylella fastidiosa}

Probab=99.59  E-value=1.2e-14  Score=105.52  Aligned_cols=79  Identities=19%  Similarity=0.315  Sum_probs=69.3

Q ss_pred             cCCCcEEEEEEcCCCChhhHHHHHHHH--HHHHHHHHcCcEEEEEeCCCHHHHHHHHHHcCCCeEEEEcCChhHHHHhCC
Q 028030           92 FKGKPVVVYFYPADETPGCTKQACAFR--DSYEKFKKAGAEVIGISGDDSSSHKAFAKKYRLPYTLLSDEGNKVRKEWGV  169 (215)
Q Consensus        92 ~~gk~~ll~f~~a~~C~~C~~~~~~l~--~l~~~~~~~~v~vv~vs~d~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~g~  169 (215)
                      ..||++||+|| ++||++|+...|.|.  ++.+++++ ++.++.|+.++                  .|...++.+.|++
T Consensus        27 ~~~k~vlv~f~-a~wC~~C~~~~~~l~~~~~~~~~~~-~~~~~~vd~~~------------------~~~~~~l~~~~~v   86 (133)
T 3fk8_A           27 RTHKPTLLVFG-ANWCTDCRALDKSLRNQKNTALIAK-HFEVVKIDVGN------------------FDRNLELSQAYGD   86 (133)
T ss_dssp             HHTCCEEEEEE-CTTCHHHHHHHHHHTSHHHHHHHHH-HCEEEEEECTT------------------TTSSHHHHHHTTC
T ss_pred             hcCCcEEEEEc-CCCCHHHHHHHHHhCCHHHHHHhcC-CEEEEEEeCCc------------------ccchHHHHHHhCC
Confidence            35899999999 999999999999999  99998876 49999998864                  2556778888998


Q ss_pred             ---CccCCCCCCccEEEEEcCCCcEEEEEeC
Q 028030          170 ---PADFFGSLPGRQTYILDKNGVVQLIYNN  197 (215)
Q Consensus       170 ---~~~~~g~~p~~~~~lid~~G~v~~~~~g  197 (215)
                         ..     +|  +++++|++|+++....|
T Consensus        87 ~~~~~-----~P--t~~~~d~~G~~~~~~~g  110 (133)
T 3fk8_A           87 PIQDG-----IP--AVVVVNSDGKVRYTTKG  110 (133)
T ss_dssp             GGGGC-----SS--EEEEECTTSCEEEECCS
T ss_pred             ccCCc-----cc--eEEEECCCCCEEEEecC
Confidence               76     89  99999999999999887

>4h86_A Peroxiredoxin type-2; oxidoreductase; 2.00A {Saccharomyces cerevisiae} PDB: 4dsq_A 4dsr_A 4dss_A

Probab=99.54  E-value=2.3e-13  Score=104.74  Aligned_cols=145  Identities=21%  Similarity=0.322  Sum_probs=108.0

Q ss_pred             cCCCCCCCCC--eEEe--C-----CC----C--CeeecCCc--CCCcEEEEEEcCCCChhhHH-HHHHHHHHHHHH-HHc
Q 028030           67 KVSKGQAPPS--FTLK--D-----QE----G--RNVSLSKF--KGKPVVVYFYPADETPGCTK-QACAFRDSYEKF-KKA  127 (215)
Q Consensus        67 ~~~~g~~~P~--f~l~--~-----~~----g--~~~~l~~~--~gk~~ll~f~~a~~C~~C~~-~~~~l~~l~~~~-~~~  127 (215)
                      ...+|+++|.  +++.  .     .+    |  +++++++.  +||.+||+++|+.+.|.|.. ++|.+.+.++++ +.+
T Consensus        25 ~~~v~~~~P~gdv~f~yip~~~~~~~~~~c~~P~~v~ls~~~~k~KkVVLf~vPGAFTPtCS~~hlPgf~~~~d~~~k~k  104 (199)
T 4h86_A           25 SDLVNKKFPAGDYKFQYIAISQSDADSESCKMPQTVEWSKLISENKKVIITGAPAAFSPTCTVSHIPGYINYLDELVKEK  104 (199)
T ss_dssp             CTTTTSBCCCTTCEEEECCCCSSSTTSGGGTSCEEEEHHHHHHHCSEEEEEECSCTTCHHHHHTTHHHHHHHHHHHHHHS
T ss_pred             HHHhCCCCCCCCceEEEecCCccccccccCCCCeeeEHHHHhcCCCeEEEEEeCCCcCCcCChhhChHHHHHHHHHHHhc
Confidence            3458888884  4432  1     11    3  44677665  79999999999999999975 799999988875 677


Q ss_pred             Cc-EEEEEeCCCHHHHHHHHHHcCC----CeEEEEcCChhHHHHhCCCccCCC-CC-CccEEEEEcCCCcEEEEEeCCCC
Q 028030          128 GA-EVIGISGDDSSSHKAFAKKYRL----PYTLLSDEGNKVRKEWGVPADFFG-SL-PGRQTYILDKNGVVQLIYNNQFQ  200 (215)
Q Consensus       128 ~v-~vv~vs~d~~~~~~~~~~~~~~----~~~~~~d~~~~~~~~~g~~~~~~g-~~-p~~~~~lid~~G~v~~~~~g~~~  200 (215)
                      |+ +|+.|++||+..+++|.+..+.    .+.++.|.++++.+++|+..+..+ .. -.|..+||| ||+|.+.+.-+..
T Consensus       105 Gvd~I~ciSVND~FVm~AW~k~~~~~~~~~i~~laD~~~eftkalGl~~~~~~gg~RS~Rya~IVd-DGvV~~~~vE~~p  183 (199)
T 4h86_A          105 EVDQVIVVTVDNPFANQAWAKSLGVKDTTHIKFASDPGCAFTKSIGFELAVGDGVYWSGRWAMVVE-NGIVTYAAKETNP  183 (199)
T ss_dssp             CCCEEEEEESSCHHHHHHHHHHTTCCCCSSEEEEECGGGHHHHHTTCEEEEETTEEEECSEEEEEE-TTEEEEEEECSST
T ss_pred             CCcEEEEEEcCCHHHHHHHHHHhcccccccccccCCcchHHHHhcCceeecCCCcceeeEEEEEEE-CCEEEEEEEeCCC
Confidence            87 6888999999999999998765    488999999999999999643222 11 235778888 9999998764321


Q ss_pred             ---C-CccHHHHHHHH
Q 028030          201 ---P-EKHIDETLKFL  212 (215)
Q Consensus       201 ---~-~~~~~~il~~l  212 (215)
                         . -...+.+|+.|
T Consensus       184 g~~~~vS~ae~vL~~L  199 (199)
T 4h86_A          184 GTDVTVSSVESVLAHL  199 (199)
T ss_dssp             TTCCSTTSHHHHHTTC
T ss_pred             CCCCcccCHHHHHhcC
Confidence               1 14567777643

>3p2a_A Thioredoxin 2, putative thioredoxin-like protein; structural genomics, center for structural genomics of infec diseases, csgid; 2.19A {Yersinia pestis}

Probab=99.54  E-value=3.1e-14  Score=105.25  Aligned_cols=103  Identities=12%  Similarity=0.192  Sum_probs=83.1

Q ss_pred             CCCCCCCCeEEeCCCCCeeecCCcCCCcEEEEEEcCCCChhhHHHHHHHHHHHHHHHHcCcEEEEEeCCCHHHHHHHHHH
Q 028030           69 SKGQAPPSFTLKDQEGRNVSLSKFKGKPVVVYFYPADETPGCTKQACAFRDSYEKFKKAGAEVIGISGDDSSSHKAFAKK  148 (215)
Q Consensus        69 ~~g~~~P~f~l~~~~g~~~~l~~~~gk~~ll~f~~a~~C~~C~~~~~~l~~l~~~~~~~~v~vv~vs~d~~~~~~~~~~~  148 (215)
                      ..|.++++..+.+.+++.+...-..+|++||+|| ++||++|+...|.|.+++++++++ +.++.|+.|           
T Consensus        30 ~~~~~~~~~~v~~l~~~~~~~~~~~~k~vlv~F~-a~wC~~C~~~~p~l~~~~~~~~~~-~~~~~vd~~-----------   96 (148)
T 3p2a_A           30 RCGHSLFDGEVINATAETLDKLLQDDLPMVIDFW-APWCGPCRSFAPIFAETAAERAGK-VRFVKVNTE-----------   96 (148)
T ss_dssp             TTCCBTTCCCCEECCTTTHHHHTTCSSCEEEEEE-CSSCHHHHHHHHHHHHHHHHTTTT-CEEEEEETT-----------
T ss_pred             hcCCccccCCceecCHHHHHHHHhcCCcEEEEEE-CCCCHHHHHHHHHHHHHHHHcCCc-eEEEEEECc-----------
Confidence            4567778888888888766543346899999999 999999999999999999998764 999999874           


Q ss_pred             cCCCeEEEEcCChhHHHHhCCCccCCCCCCccEEEEEcCCCcEEEEEeCCCCCC
Q 028030          149 YRLPYTLLSDEGNKVRKEWGVPADFFGSLPGRQTYILDKNGVVQLIYNNQFQPE  202 (215)
Q Consensus       149 ~~~~~~~~~d~~~~~~~~~g~~~~~~g~~p~~~~~lid~~G~v~~~~~g~~~~~  202 (215)
                                .+.++.+.|++..     +|  +++++ ++|+++..+.|....+
T Consensus        97 ----------~~~~l~~~~~v~~-----~P--t~~~~-~~G~~~~~~~G~~~~~  132 (148)
T 3p2a_A           97 ----------AEPALSTRFRIRS-----IP--TIMLY-RNGKMIDMLNGAVPKA  132 (148)
T ss_dssp             ----------TCHHHHHHTTCCS-----SS--EEEEE-ETTEEEEEESSCCCHH
T ss_pred             ----------CCHHHHHHCCCCc-----cC--EEEEE-ECCeEEEEEeCCCCHH
Confidence                      3457788899987     89  77777 6999999998864433

>2kuc_A Putative disulphide-isomerase; structural genomics, thioredo PSI-2, protein structure initiative; NMR {Bacteroides thetaiotaomicron}

Probab=99.53  E-value=2.8e-14  Score=102.96  Aligned_cols=86  Identities=16%  Similarity=0.247  Sum_probs=69.4

Q ss_pred             eecCCcCCCcEEEEEEcCCCChhhHHHHHHH---HHHHHHHHHcCcEEEEEeCCCHHHHHHHHHHcCCCeEEEEcCChhH
Q 028030           87 VSLSKFKGKPVVVYFYPADETPGCTKQACAF---RDSYEKFKKAGAEVIGISGDDSSSHKAFAKKYRLPYTLLSDEGNKV  163 (215)
Q Consensus        87 ~~l~~~~gk~~ll~f~~a~~C~~C~~~~~~l---~~l~~~~~~~~v~vv~vs~d~~~~~~~~~~~~~~~~~~~~d~~~~~  163 (215)
                      +.+++.+||++||+|| ++||++|+...+.+   .++.+.+.. ++.++.|..+.                   +....+
T Consensus        20 ~~~~~~~~k~vlv~f~-a~wC~~C~~~~~~~~~~~~~~~~~~~-~~~~~~vd~~~-------------------~~~~~~   78 (130)
T 2kuc_A           20 LKRAEVEDKLLFVDCF-TTWCGPCKRLSKVVFKDSLVADYFNR-HFVNLKMDMEK-------------------GEGVEL   78 (130)
T ss_dssp             HHHHHHHSSCEEEEEC-CTTCTHHHHHHHHGGGCHHHHHHHHH-HSEEEEECSSS-------------------TTHHHH
T ss_pred             HHHHHhcCCeEEEEEE-CCCCccHHHHHHHhcCcHHHHHHHhc-CeEEEEEecCC-------------------cchHHH
Confidence            4445557899999999 99999999999998   666655554 48888887764                   345678


Q ss_pred             HHHhCCCccCCCCCCccEEEEEcCCCcEEEEEeCCCC
Q 028030          164 RKEWGVPADFFGSLPGRQTYILDKNGVVQLIYNNQFQ  200 (215)
Q Consensus       164 ~~~~g~~~~~~g~~p~~~~~lid~~G~v~~~~~g~~~  200 (215)
                      .+.|++..     +|  +++++|++|+++..+.|...
T Consensus        79 ~~~~~v~~-----~P--t~~~~d~~G~~~~~~~G~~~  108 (130)
T 2kuc_A           79 RKKYGVHA-----YP--TLLFINSSGEVVYRLVGAED  108 (130)
T ss_dssp             HHHTTCCS-----SC--EEEEECTTSCEEEEEESCCC
T ss_pred             HHHcCCCC-----CC--EEEEECCCCcEEEEecCCCC
Confidence            88999987     89  99999999999999888543

>3zzx_A Thioredoxin; oxidoreductase; 1.88A {Litopenaeus vannamei}

Probab=99.52  E-value=7e-14  Score=97.97  Aligned_cols=86  Identities=19%  Similarity=0.281  Sum_probs=68.7

Q ss_pred             cCCCcEEEEEEcCCCChhhHHHHHHHHHHHHHHHHcCcEEEEEeCCCHHHHHHHHHHcCCCeEEEEcCChhHHHHhCCCc
Q 028030           92 FKGKPVVVYFYPADETPGCTKQACAFRDSYEKFKKAGAEVIGISGDDSSSHKAFAKKYRLPYTLLSDEGNKVRKEWGVPA  171 (215)
Q Consensus        92 ~~gk~~ll~f~~a~~C~~C~~~~~~l~~l~~~~~~~~v~vv~vs~d~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~g~~~  171 (215)
                      ..+|++||+|| |+||++|+...|.+.+++++++  ++.++.|..|                     ...++.+.|++..
T Consensus        18 ~~~k~vvv~F~-a~wC~~C~~~~p~~~~~~~~~~--~~~~~~vd~d---------------------~~~~l~~~~~V~~   73 (105)
T 3zzx_A           18 AGNKLVVIDFY-ATWCGPCKMIAPKLEELSQSMS--DVVFLKVDVD---------------------ECEDIAQDNQIAC   73 (105)
T ss_dssp             TTTSEEEEEEE-CTTCHHHHHHHHHHHHHHHHCT--TEEEEEEETT---------------------TCHHHHHHTTCCB
T ss_pred             cCCCEEEEEEE-CCCCCCccCCCcchhhhhhccC--CeEEEEEecc---------------------cCHHHHHHcCCCe
Confidence            35789999999 9999999999999999998876  4778878753                     4567888999998


Q ss_pred             cCCCCCCccEEEEEcCCCcEEEEEeCCCCCCccHHHHHHHHhc
Q 028030          172 DFFGSLPGRQTYILDKNGVVQLIYNNQFQPEKHIDETLKFLQS  214 (215)
Q Consensus       172 ~~~g~~p~~~~~lid~~G~v~~~~~g~~~~~~~~~~il~~l~~  214 (215)
                           +|  +++++ ++|+++.++.|.     +.+++.+.|++
T Consensus        74 -----~P--T~~~~-~~G~~v~~~~G~-----~~~~l~~~i~k  103 (105)
T 3zzx_A           74 -----MP--TFLFM-KNGQKLDSLSGA-----NYDKLLELVEK  103 (105)
T ss_dssp             -----SS--EEEEE-ETTEEEEEEESC-----CHHHHHHHHHH
T ss_pred             -----ec--EEEEE-ECCEEEEEEeCc-----CHHHHHHHHHh
Confidence                 99  65555 899999999883     23556666653

>2pu9_C TRX-F, thioredoxin F-type, chloroplast; protein-protein complex, iron-sulfur, electron transport; 1.65A {Spinacia oleracea} PDB: 2pvo_C 1f9m_A

Probab=99.51  E-value=2.4e-13  Score=95.35  Aligned_cols=89  Identities=16%  Similarity=0.224  Sum_probs=70.7

Q ss_pred             CCcCCCcEEEEEEcCCCChhhHHHHHHHHHHHHHHHHcCcEEEEEeCCCHHHHHHHHHHcCCCeEEEEcCChhHHHHhCC
Q 028030           90 SKFKGKPVVVYFYPADETPGCTKQACAFRDSYEKFKKAGAEVIGISGDDSSSHKAFAKKYRLPYTLLSDEGNKVRKEWGV  169 (215)
Q Consensus        90 ~~~~gk~~ll~f~~a~~C~~C~~~~~~l~~l~~~~~~~~v~vv~vs~d~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~g~  169 (215)
                      .+.+||++||+|| ++||++|+...|.|.+++++++  ++.++.|+.++                    .+.++.+.|++
T Consensus        20 ~~~~~~~vlv~f~-a~wC~~C~~~~~~l~~~~~~~~--~v~~~~vd~~~--------------------~~~~~~~~~~v   76 (111)
T 2pu9_C           20 KAAGDKPVVLDMF-TQWCGPSKAMAPKYEKLAEEYL--DVIFLKLDCNQ--------------------ENKTLAKELGI   76 (111)
T ss_dssp             TTCTTSCEEEEEE-CTTCHHHHHHHHHHHHHHHHCT--TSEEEEEECSS--------------------TTHHHHHHHCC
T ss_pred             HhcCCCEEEEEEE-CCcCHhHHHHCHHHHHHHHHCC--CeEEEEEecCc--------------------chHHHHHHcCC
Confidence            3346899999999 9999999999999999998886  58999998763                    35678889999


Q ss_pred             CccCCCCCCccEEEEEcCCCcEEEEEeCCCCCCccHHHHHHH
Q 028030          170 PADFFGSLPGRQTYILDKNGVVQLIYNNQFQPEKHIDETLKF  211 (215)
Q Consensus       170 ~~~~~g~~p~~~~~lid~~G~v~~~~~g~~~~~~~~~~il~~  211 (215)
                      ..     +|  + ++++++|+++..+.|. . .+.+.+.++.
T Consensus        77 ~~-----~P--t-~~~~~~G~~~~~~~G~-~-~~~l~~~l~~  108 (111)
T 2pu9_C           77 RV-----VP--T-FKILKENSVVGEVTGA-K-YDKLLEAIQA  108 (111)
T ss_dssp             SB-----SS--E-EEEESSSSEEEEEESS-C-HHHHHHHHHH
T ss_pred             Ce-----ee--E-EEEEeCCcEEEEEcCC-C-HHHHHHHHHH
Confidence            87     99  5 7778999999998885 2 3334444443

>3f9u_A Putative exported cytochrome C biogenesis-related; exported cytochrome C biogenesis-related protein, bacteroide fragilis; 2.20A {Bacteroides fragilis nctc 9343}

Probab=99.49  E-value=4.8e-14  Score=106.81  Aligned_cols=105  Identities=16%  Similarity=0.151  Sum_probs=68.4

Q ss_pred             eecCCcCCCcEEEEEEcCCCChhhHHHHHHH---HHHHHHHHHcCcEEEEEeCCCHHHHHHHHH-HcCCC---eEEEEcC
Q 028030           87 VSLSKFKGKPVVVYFYPADETPGCTKQACAF---RDSYEKFKKAGAEVIGISGDDSSSHKAFAK-KYRLP---YTLLSDE  159 (215)
Q Consensus        87 ~~l~~~~gk~~ll~f~~a~~C~~C~~~~~~l---~~l~~~~~~~~v~vv~vs~d~~~~~~~~~~-~~~~~---~~~~~d~  159 (215)
                      +.+++.+||++||+|| ++||++|+...+.+   .++.+.+++ ++.++.|+.|+...+..... .....   +..+.|.
T Consensus        40 ~~~a~~~gk~vlv~F~-A~WC~~C~~~~~~~~~~~~~~~~~~~-~~~~v~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~  117 (172)
T 3f9u_A           40 MEYARQHNKPVMLDFT-GYGCVNCRKMELAVWTDPKVSSIINN-DYVLITLYVDNKTPLTEPVKIMENGTERTLRTVGDK  117 (172)
T ss_dssp             HHHHHHTTCCEEEEEE-CTTCHHHHHHHHHTTTSHHHHHHHHH-HCEEEEEETTCCCEEEEEEEEEETTEEEEEEEHHHH
T ss_pred             HHHHHHcCCeEEEEEE-CCCCHHHHHHHHHhcCCHHHHHHhcC-CEEEEEEecCcccccchhhhhhhcchhhhhhhhhhh
Confidence            4445567999999999 99999999864444   555555655 59999999876432100000 00000   0111111


Q ss_pred             ChhH-HHHhCCCccCCCCCCccEEEEEcCCCcEEEEEeCCCC
Q 028030          160 GNKV-RKEWGVPADFFGSLPGRQTYILDKNGVVQLIYNNQFQ  200 (215)
Q Consensus       160 ~~~~-~~~~g~~~~~~g~~p~~~~~lid~~G~v~~~~~g~~~  200 (215)
                      .+.+ .+.|++..     +|  +++++|++|+++..+.|...
T Consensus       118 ~~~~~~~~~~v~~-----~P--t~~lid~~G~~~~~~~G~~~  152 (172)
T 3f9u_A          118 WSYLQRVKFGANA-----QP--FYVLIDNEGNPLNKSYAYDE  152 (172)
T ss_dssp             HHHHHHHHHSCCC-----SS--EEEEECTTSCBSSCCBCSCC
T ss_pred             hhHHHHHHcCCCC-----cc--eEEEECCCCCEEeeccCCCC
Confidence            1222 58899987     99  99999999999998888654

>3qfa_C Thioredoxin; protein-protein complex, rossmann fold, HO pyridine nucleotide disulfide oxidoreductase, electron TRAN oxidoreductase; HET: FAD; 2.20A {Homo sapiens} PDB: 3qfb_C*

Probab=99.47  E-value=3.1e-13  Score=95.96  Aligned_cols=75  Identities=21%  Similarity=0.189  Sum_probs=64.7

Q ss_pred             cCCCcEEEEEEcCCCChhhHHHHHHHHHHHHHHHHcCcEEEEEeCCCHHHHHHHHHHcCCCeEEEEcCChhHHHHhCCCc
Q 028030           92 FKGKPVVVYFYPADETPGCTKQACAFRDSYEKFKKAGAEVIGISGDDSSSHKAFAKKYRLPYTLLSDEGNKVRKEWGVPA  171 (215)
Q Consensus        92 ~~gk~~ll~f~~a~~C~~C~~~~~~l~~l~~~~~~~~v~vv~vs~d~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~g~~~  171 (215)
                      .+||++||+|| ++||++|+...|.|.++++++++  +.++.|+.|                     .+.++.+.|++..
T Consensus        29 ~~~k~vlv~F~-a~wC~~C~~~~p~l~~l~~~~~~--v~~~~vd~d---------------------~~~~l~~~~~v~~   84 (116)
T 3qfa_C           29 AGDKLVVVDFS-ATWCGPSKMIKPFFHSLSEKYSN--VIFLEVDVD---------------------DCQDVASECEVKS   84 (116)
T ss_dssp             HTTSCEEEEEE-CTTCHHHHHHHHHHHHHHTTCTT--SEEEEEETT---------------------TTHHHHHHTTCCS
T ss_pred             cCCCEEEEEEE-CCCCHHHHHHHHHHHHHHHHCCC--CEEEEEECC---------------------CCHHHHHHcCCcc
Confidence            36899999999 99999999999999999988864  899999874                     3457888999987


Q ss_pred             cCCCCCCccEEEEEcCCCcEEEEEeCC
Q 028030          172 DFFGSLPGRQTYILDKNGVVQLIYNNQ  198 (215)
Q Consensus       172 ~~~g~~p~~~~~lid~~G~v~~~~~g~  198 (215)
                           +|  +++++ ++|+++..+.|.
T Consensus        85 -----~P--t~~~~-~~G~~~~~~~G~  103 (116)
T 3qfa_C           85 -----MP--TFQFF-KKGQKVGEFSGA  103 (116)
T ss_dssp             -----SS--EEEEE-SSSSEEEEEESC
T ss_pred             -----cc--EEEEE-eCCeEEEEEcCC
Confidence                 99  76666 899999999885

>2voc_A Thioredoxin; electron transport, homodimer, disulfide, transport, redox-active center; 1.50A {Bacillus subtilis} PDB: 2ipa_A 2gzy_A 2gzz_A

Probab=99.46  E-value=2.1e-13  Score=96.05  Aligned_cols=76  Identities=17%  Similarity=0.206  Sum_probs=67.0

Q ss_pred             CCCcEEEEEEcCCCChhhHHHHHHHHHHHHHHHHcCcEEEEEeCCCHHHHHHHHHHcCCCeEEEEcCChhHHHHhCCCcc
Q 028030           93 KGKPVVVYFYPADETPGCTKQACAFRDSYEKFKKAGAEVIGISGDDSSSHKAFAKKYRLPYTLLSDEGNKVRKEWGVPAD  172 (215)
Q Consensus        93 ~gk~~ll~f~~a~~C~~C~~~~~~l~~l~~~~~~~~v~vv~vs~d~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~g~~~~  172 (215)
                      .||++||+|| ++||++|+...+.+.++++++++ ++.++.|+.|.                     +.++.+.|++.. 
T Consensus        16 ~~~~~lv~f~-a~wC~~C~~~~~~l~~~~~~~~~-~v~~~~vd~~~---------------------~~~l~~~~~v~~-   71 (112)
T 2voc_A           16 SEGVVLADFW-APWCGPSKMIAPVLEELDQEMGD-KLKIVKIDVDE---------------------NQETAGKYGVMS-   71 (112)
T ss_dssp             SSSEEEEEEE-CTTBGGGGGHHHHHHHHHHHHTT-TCEEEEEETTT---------------------CCSHHHHTTCCS-
T ss_pred             CCCEEEEEEE-CCCCHHHHHHHHHHHHHHHHhCC-CcEEEEEECCC---------------------CHHHHHHcCCCc-
Confidence            6899999999 99999999999999999999986 59999998753                     457888999987 


Q ss_pred             CCCCCCccEEEEEcCCCcEEEEEeCCC
Q 028030          173 FFGSLPGRQTYILDKNGVVQLIYNNQF  199 (215)
Q Consensus       173 ~~g~~p~~~~~lid~~G~v~~~~~g~~  199 (215)
                          +|  +++++ ++|+++..+.|..
T Consensus        72 ----~P--t~~~~-~~G~~~~~~~G~~   91 (112)
T 2voc_A           72 ----IP--TLLVL-KDGEVVETSVGFK   91 (112)
T ss_dssp             ----BS--EEEEE-ETTEEEEEEESCC
T ss_pred             ----cc--EEEEE-eCCEEEEEEeCCC
Confidence                89  88888 8999999998854

>2l5l_A Thioredoxin; structural genomics, electron transport, PSI-2, protein STRU initiative; NMR {Bacteroides vulgatus}

Probab=99.46  E-value=4.1e-13  Score=97.89  Aligned_cols=76  Identities=16%  Similarity=0.352  Sum_probs=64.9

Q ss_pred             CCCcEEEEEEcCCCChhhHHHHHHHHHHHHHHHHcCcEEEEEeCCCHHHHHHHHHHcCCCeEEEEcCChhHHHHhCCCcc
Q 028030           93 KGKPVVVYFYPADETPGCTKQACAFRDSYEKFKKAGAEVIGISGDDSSSHKAFAKKYRLPYTLLSDEGNKVRKEWGVPAD  172 (215)
Q Consensus        93 ~gk~~ll~f~~a~~C~~C~~~~~~l~~l~~~~~~~~v~vv~vs~d~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~g~~~~  172 (215)
                      .+|++||+|| ++||++|+...|.|.++++++++ ++.++.|+.|.                     +.++.+.|++.. 
T Consensus        37 ~~k~~lv~f~-a~wC~~C~~~~~~l~~l~~~~~~-~v~~~~vd~~~---------------------~~~l~~~~~v~~-   92 (136)
T 2l5l_A           37 GDKPAIVDFY-ADWCGPCKMVAPILDELAKEYDG-QIVIYKVDTEK---------------------EQELAGAFGIRS-   92 (136)
T ss_dssp             CSSCEEEEEE-CTTSHHHHHHHHHHHHHHHHTTT-TCEEEEEETTT---------------------CHHHHHHTTCCS-
T ss_pred             CCCEEEEEEE-CCcCHHHHHHHHHHHHHHHHhcC-CEEEEEEeCCC---------------------CHHHHHHcCCCC-
Confidence            4689999999 99999999999999999999875 49999998753                     446788899987 


Q ss_pred             CCCCCCccEEEEEcCCCcEEEEEeCCC
Q 028030          173 FFGSLPGRQTYILDKNGVVQLIYNNQF  199 (215)
Q Consensus       173 ~~g~~p~~~~~lid~~G~v~~~~~g~~  199 (215)
                          +|  +++++|++|+++ .+.|..
T Consensus        93 ----~P--t~~~~~~~G~~~-~~~G~~  112 (136)
T 2l5l_A           93 ----IP--SILFIPMEGKPE-MAQGAM  112 (136)
T ss_dssp             ----SC--EEEEECSSSCCE-EEESCC
T ss_pred             ----CC--EEEEECCCCcEE-EEeCCC
Confidence                89  999999999998 566654

>3f3q_A Thioredoxin-1; His TAG, electron transport, cytoplasm, deoxyribonucleotide synthesis, golgi apparatus, membrane, nucleus; 1.76A {Saccharomyces cerevisiae} PDB: 3f3r_A* 2i9h_A 2fa4_A 2hsy_A 3pin_A 4dss_B

Probab=99.46  E-value=7.7e-13  Score=92.77  Aligned_cols=74  Identities=26%  Similarity=0.275  Sum_probs=64.6

Q ss_pred             CCCcEEEEEEcCCCChhhHHHHHHHHHHHHHHHHcCcEEEEEeCCCHHHHHHHHHHcCCCeEEEEcCChhHHHHhCCCcc
Q 028030           93 KGKPVVVYFYPADETPGCTKQACAFRDSYEKFKKAGAEVIGISGDDSSSHKAFAKKYRLPYTLLSDEGNKVRKEWGVPAD  172 (215)
Q Consensus        93 ~gk~~ll~f~~a~~C~~C~~~~~~l~~l~~~~~~~~v~vv~vs~d~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~g~~~~  172 (215)
                      +||++||+|| ++||++|+...|.+.+++++++  ++.++.|..|                     ...++.+.|++.. 
T Consensus        23 ~~k~vlv~f~-a~wC~~C~~~~p~l~~l~~~~~--~~~~~~vd~~---------------------~~~~l~~~~~v~~-   77 (109)
T 3f3q_A           23 QDKLVVVDFY-ATWCGPCKMIAPMIEKFSEQYP--QADFYKLDVD---------------------ELGDVAQKNEVSA-   77 (109)
T ss_dssp             SSSCEEEEEE-CTTCHHHHHHHHHHHHHHHHCT--TSEEEEEETT---------------------TCHHHHHHTTCCS-
T ss_pred             cCCEEEEEEE-CCcCHhHHHHHHHHHHHHHHCC--CCEEEEEECC---------------------CCHHHHHHcCCCc-
Confidence            5899999999 9999999999999999999886  4888888764                     4567888999987 


Q ss_pred             CCCCCCccEEEEEcCCCcEEEEEeCC
Q 028030          173 FFGSLPGRQTYILDKNGVVQLIYNNQ  198 (215)
Q Consensus       173 ~~g~~p~~~~~lid~~G~v~~~~~g~  198 (215)
                          +|  ++++++ +|+++..+.|.
T Consensus        78 ----~P--t~~~~~-~G~~~~~~~G~   96 (109)
T 3f3q_A           78 ----MP--TLLLFK-NGKEVAKVVGA   96 (109)
T ss_dssp             ----SS--EEEEEE-TTEEEEEEESS
T ss_pred             ----cC--EEEEEE-CCEEEEEEeCC
Confidence                99  888887 99999999885

>3cxg_A Putative thioredoxin; malaria, structural GEN oxidoreductase, structural genomics consortium, SGC; 2.00A {Plasmodium falciparum}

Probab=99.46  E-value=4.4e-14  Score=102.96  Aligned_cols=90  Identities=19%  Similarity=0.227  Sum_probs=68.0

Q ss_pred             eEEeCCCCCeeecCCcCCCcEEEEEEcCCCChhhHHHHHHHHHHHHHHHHcCcEEEEEeCCCHHHHHHHHHHcCCCeEEE
Q 028030           77 FTLKDQEGRNVSLSKFKGKPVVVYFYPADETPGCTKQACAFRDSYEKFKKAGAEVIGISGDDSSSHKAFAKKYRLPYTLL  156 (215)
Q Consensus        77 f~l~~~~g~~~~l~~~~gk~~ll~f~~a~~C~~C~~~~~~l~~l~~~~~~~~v~vv~vs~d~~~~~~~~~~~~~~~~~~~  156 (215)
                      +.+.+.++-.-.+++.+||++||+|| ++||++|+...|.+.++.+++   ++.++.|..|.                  
T Consensus        23 ~~l~~~~~~~~~l~~~~~k~vvv~F~-a~wC~~C~~~~p~l~~l~~~~---~v~~~~vd~~~------------------   80 (133)
T 3cxg_A           23 IELKNTGSLNQVFSSTQNSSIVIKFG-AVWCKPCNKIKEYFKNQLNYY---YVTLVDIDVDI------------------   80 (133)
T ss_dssp             EECCCTTHHHHHHTC-CCSEEEEEEE-CTTCHHHHHTHHHHHGGGGTE---ECEEEEEETTT------------------
T ss_pred             EEecChhHHHHHHHhcCCCEEEEEEE-CCCCHHHHHHHHHHHHHHHhc---CEEEEEEeccc------------------
Confidence            33444444333456667899999999 999999999999999887665   47888887543                  


Q ss_pred             EcCChhHHHHhCCCccCCCCCCccEEEEE-cCCCc--EEEEEeCC
Q 028030          157 SDEGNKVRKEWGVPADFFGSLPGRQTYIL-DKNGV--VQLIYNNQ  198 (215)
Q Consensus       157 ~d~~~~~~~~~g~~~~~~g~~p~~~~~li-d~~G~--v~~~~~g~  198 (215)
                         ..++.+.|++..     +|  +++++ |++|+  ++..+.|.
T Consensus        81 ---~~~l~~~~~v~~-----~P--t~~~~~~~~g~g~~~~~~~G~  115 (133)
T 3cxg_A           81 ---HPKLNDQHNIKA-----LP--TFEFYFNLNNEWVLVHTVEGA  115 (133)
T ss_dssp             ---CHHHHHHTTCCS-----SS--EEEEEEEETTEEEEEEEEESC
T ss_pred             ---hHHHHHhcCCCC-----CC--EEEEEEecCCCeEEEEEEcCC
Confidence               457888999987     99  88887 45666  88888885

>1faa_A Thioredoxin F; electron transport; 1.85A {Spinacia oleracea} SCOP: c.47.1.1

Probab=99.45  E-value=7.2e-13  Score=94.73  Aligned_cols=87  Identities=17%  Similarity=0.255  Sum_probs=69.2

Q ss_pred             cCCCcEEEEEEcCCCChhhHHHHHHHHHHHHHHHHcCcEEEEEeCCCHHHHHHHHHHcCCCeEEEEcCChhHHHHhCCCc
Q 028030           92 FKGKPVVVYFYPADETPGCTKQACAFRDSYEKFKKAGAEVIGISGDDSSSHKAFAKKYRLPYTLLSDEGNKVRKEWGVPA  171 (215)
Q Consensus        92 ~~gk~~ll~f~~a~~C~~C~~~~~~l~~l~~~~~~~~v~vv~vs~d~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~g~~~  171 (215)
                      .+||+++|+|| ++||++|+...|.+.+++++++  ++.++.|..++                    ++.++.+.|++..
T Consensus        35 ~~~~~~vv~f~-a~wC~~C~~~~~~l~~~~~~~~--~~~~~~vd~~~--------------------~~~~~~~~~~v~~   91 (124)
T 1faa_A           35 AGDKPVVLDMF-TQWCGPCKAMAPKYEKLAEEYL--DVIFLKLDCNQ--------------------ENKTLAKELGIRV   91 (124)
T ss_dssp             TTTSCEEEEEE-CTTCHHHHHHHHHHHHHHHHCT--TSEEEEEECSS--------------------TTHHHHHHHCCSS
T ss_pred             cCCCEEEEEEE-CCcCHhHHHHhHHHHHHHHHCC--CCEEEEEecCc--------------------chHHHHHHcCCCe
Confidence            36899999999 9999999999999999998886  58999998753                    2457888999987


Q ss_pred             cCCCCCCccEEEEEcCCCcEEEEEeCCCCCCccHHHHHHH
Q 028030          172 DFFGSLPGRQTYILDKNGVVQLIYNNQFQPEKHIDETLKF  211 (215)
Q Consensus       172 ~~~g~~p~~~~~lid~~G~v~~~~~g~~~~~~~~~~il~~  211 (215)
                           +|  + ++++++|+++..+.|..  .+.+.+.++.
T Consensus        92 -----~P--t-~~~~~~G~~~~~~~G~~--~~~l~~~i~~  121 (124)
T 1faa_A           92 -----VP--T-FKILKENSVVGEVTGAK--YDKLLEAIQA  121 (124)
T ss_dssp             -----SS--E-EEEEETTEEEEEEESSC--HHHHHHHHHH
T ss_pred             -----ee--E-EEEEeCCcEEEEEcCCC--HHHHHHHHHH
Confidence                 99  5 66678999999988852  3334444443

>1t00_A Thioredoxin, TRX; redox regulation, multifunction macromolecule, electron transport; 1.51A {Streptomyces coelicolor}

Probab=99.45  E-value=5.8e-13  Score=93.35  Aligned_cols=77  Identities=19%  Similarity=0.326  Sum_probs=64.7

Q ss_pred             CCCcEEEEEEcCCCChhhHHHHHHHHHHHHHHHHcCcEEEEEeCCCHHHHHHHHHHcCCCeEEEEcCChhHHHHhCCCcc
Q 028030           93 KGKPVVVYFYPADETPGCTKQACAFRDSYEKFKKAGAEVIGISGDDSSSHKAFAKKYRLPYTLLSDEGNKVRKEWGVPAD  172 (215)
Q Consensus        93 ~gk~~ll~f~~a~~C~~C~~~~~~l~~l~~~~~~~~v~vv~vs~d~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~g~~~~  172 (215)
                      .||++||+|| ++||++|+...|.+.+++++++++ +.++.|+.|.                     +.++.+.|++.. 
T Consensus        22 ~~~~~vv~f~-~~~C~~C~~~~~~l~~~~~~~~~~-~~~~~v~~~~---------------------~~~~~~~~~v~~-   77 (112)
T 1t00_A           22 NDKPVLVDFW-AAWCGPCRQIAPSLEAIAAEYGDK-IEIVKLNIDE---------------------NPGTAAKYGVMS-   77 (112)
T ss_dssp             CSSCEEEEEE-CTTCHHHHHHHHHHHHHHHHTTTT-CEEEEEETTT---------------------CHHHHHHTTCCS-
T ss_pred             CCCeEEEEEE-CCCCHhHHhcCHHHHHHHHHhcCC-eEEEEEEcCC---------------------CHHHHHhCCCCc-
Confidence            4789999999 999999999999999999998764 9999998754                     456788899987 


Q ss_pred             CCCCCCccEEEEEcCCCcEEEEEeCCCC
Q 028030          173 FFGSLPGRQTYILDKNGVVQLIYNNQFQ  200 (215)
Q Consensus       173 ~~g~~p~~~~~lid~~G~v~~~~~g~~~  200 (215)
                          +|  +++++ ++|+++..+.|..+
T Consensus        78 ----~P--t~~~~-~~G~~~~~~~G~~~   98 (112)
T 1t00_A           78 ----IP--TLNVY-QGGEVAKTIVGAKP   98 (112)
T ss_dssp             ----SS--EEEEE-ETTEEEEEEESCCC
T ss_pred             ----cc--EEEEE-eCCEEEEEEeCCCC
Confidence                89  65555 89999999988643

>3gix_A Thioredoxin-like protein 4B; PRE-mRNA splicing, TXNL4B, DLP, cell cycle, mRNA processing, mRNA splicing, nucleus, phosphoprotein, splicing; HET: SUC; 1.33A {Homo sapiens} SCOP: c.47.1.0 PDB: 1xbs_A

Probab=99.45  E-value=2.1e-13  Score=101.40  Aligned_cols=74  Identities=19%  Similarity=0.235  Sum_probs=63.0

Q ss_pred             CCCcEEEEEEcCCCChhhHHHHHHHHHHHHHHHHcCcEEEEEeCCCHHHHHHHHHHcCCCeEEEEcCChhHHHHhCCCcc
Q 028030           93 KGKPVVVYFYPADETPGCTKQACAFRDSYEKFKKAGAEVIGISGDDSSSHKAFAKKYRLPYTLLSDEGNKVRKEWGVPAD  172 (215)
Q Consensus        93 ~gk~~ll~f~~a~~C~~C~~~~~~l~~l~~~~~~~~v~vv~vs~d~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~g~~~~  172 (215)
                      .+|++||+|| ++||++|+.+.|.|.+++++++++ +.++.|+.                     |...++...|++.. 
T Consensus        22 ~~k~vlv~F~-a~WC~~C~~~~p~l~~l~~~~~~~-~~~~~vd~---------------------d~~~~l~~~~~v~~-   77 (149)
T 3gix_A           22 AEKVLVLRFG-RDEDPVCLQLDDILSKTSSDLSKM-AAIYLVDV---------------------DQTAVYTQYFDISY-   77 (149)
T ss_dssp             CSSEEEEEEE-CTTSHHHHHHHHHHHHHHTTTTTT-EEEEEEET---------------------TTCCHHHHHTTCCS-
T ss_pred             CCCEEEEEEE-CCCCHHHHHHHHHHHHHHHHccCc-eEEEEEEC---------------------CcCHHHHHHcCCCc-
Confidence            4799999999 999999999999999999988754 88888876                     34567888999987 


Q ss_pred             CCCCCCccEEEEEcCCCcEE---------EEEeC
Q 028030          173 FFGSLPGRQTYILDKNGVVQ---------LIYNN  197 (215)
Q Consensus       173 ~~g~~p~~~~~lid~~G~v~---------~~~~g  197 (215)
                          +|  +++ ++++|+++         ..+.|
T Consensus        78 ----~P--t~~-~~~~G~~v~~~~g~~~~~~~~G  104 (149)
T 3gix_A           78 ----IP--STV-FFFNGQHMKVDYGSPDHTKFVG  104 (149)
T ss_dssp             ----SS--EEE-EEETTEEEEEECSSSCCSCEES
T ss_pred             ----cC--eEE-EEECCeEEEeecCCCCCCeEee
Confidence                99  666 77899999         67777

>2vlu_A Thioredoxin, thioredoxin H isoform 2.; oxidoreductase, thioredoxin-fold, protein disulfide reductase; 1.70A {Hordeum vulgare var} PDB: 2vlt_A 2vlv_A 2iwt_A*

Probab=99.44  E-value=2e-13  Score=97.29  Aligned_cols=108  Identities=19%  Similarity=0.248  Sum_probs=75.8

Q ss_pred             CCCCCCCCeEEeCCCCCeeecCCc--CCCcEEEEEEcCCCChhhHHHHHHHHHHHHHHHHcCcEEEEEeCCCHHHHHHHH
Q 028030           69 SKGQAPPSFTLKDQEGRNVSLSKF--KGKPVVVYFYPADETPGCTKQACAFRDSYEKFKKAGAEVIGISGDDSSSHKAFA  146 (215)
Q Consensus        69 ~~g~~~P~f~l~~~~g~~~~l~~~--~gk~~ll~f~~a~~C~~C~~~~~~l~~l~~~~~~~~v~vv~vs~d~~~~~~~~~  146 (215)
                      ..|...+.+.+.+.++-.-.+.+.  .||++||+|| ++||++|+...|.|.++++++++  +.++.|+.|+        
T Consensus         7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vv~f~-~~~C~~C~~~~~~l~~~~~~~~~--~~~~~vd~~~--------   75 (122)
T 2vlu_A            7 AAAVAAEVISVHSLEQWTMQIEEANTAKKLVVIDFT-ASWCGPCRIMAPVFADLAKKFPN--AVFLKVDVDE--------   75 (122)
T ss_dssp             -----CCCEEECSHHHHHHHHHHHHHTTCCEEEEEE-CTTCHHHHHHHHHHHHHHHHCTT--SEEEEEETTT--------
T ss_pred             ccCCCCcceeccCHHHHHHHHHHhhccCCEEEEEEE-CCCCHHHHHHHHHHHHHHHHCCC--cEEEEEECCC--------
Confidence            355666777765544322222222  5899999999 99999999999999999988874  8999998754        


Q ss_pred             HHcCCCeEEEEcCChhHHHHhCCCccCCCCCCccEEEEEcCCCcEEEEEeCCCCCCccHHHHHH
Q 028030          147 KKYRLPYTLLSDEGNKVRKEWGVPADFFGSLPGRQTYILDKNGVVQLIYNNQFQPEKHIDETLK  210 (215)
Q Consensus       147 ~~~~~~~~~~~d~~~~~~~~~g~~~~~~g~~p~~~~~lid~~G~v~~~~~g~~~~~~~~~~il~  210 (215)
                                   +.++.+.|++..     +|  ++++ .++|+++..+.|..  .+.+.+.++
T Consensus        76 -------------~~~~~~~~~v~~-----~P--t~~~-~~~G~~~~~~~G~~--~~~l~~~l~  116 (122)
T 2vlu_A           76 -------------LKPIAEQFSVEA-----MP--TFLF-MKEGDVKDRVVGAI--KEELTAKVG  116 (122)
T ss_dssp             -------------CHHHHHHTTCCS-----SS--EEEE-EETTEEEEEEESSC--HHHHHHHHH
T ss_pred             -------------CHHHHHHcCCCc-----cc--EEEE-EeCCEEEEEEeCcC--HHHHHHHHH
Confidence                         456788899987     99  6554 48999999998854  333444443

>1z6n_A Hypothetical protein PA1234; alpha-beta-alpha sandwich, structura genomics, PSI, protein structure initiative; 1.50A {Pseudomonas aeruginosa} SCOP: c.47.1.1 PDB: 3lef_A

Probab=99.43  E-value=1.4e-13  Score=104.32  Aligned_cols=79  Identities=14%  Similarity=0.081  Sum_probs=62.0

Q ss_pred             ecCCcCCCcEEEEEEcCCCChhhHHHHHHHHHHHHHHHHcCcEEEEEeCCCHHHHHHHHHHcCCCeEEEEcCChhHHHHh
Q 028030           88 SLSKFKGKPVVVYFYPADETPGCTKQACAFRDSYEKFKKAGAEVIGISGDDSSSHKAFAKKYRLPYTLLSDEGNKVRKEW  167 (215)
Q Consensus        88 ~l~~~~gk~~ll~f~~a~~C~~C~~~~~~l~~l~~~~~~~~v~vv~vs~d~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~  167 (215)
                      .+.+++||++||+|| ++||++|+.++|.|.+++++++  ++.++.|+.|...                     ++...|
T Consensus        48 ~l~~~~~k~vvv~F~-A~WC~pC~~~~P~l~~l~~~~~--~v~~~~v~~d~~~---------------------~~~~~~  103 (167)
T 1z6n_A           48 RLQRIERRYRLLVAG-EMWCPDCQINLAALDFAQRLQP--NIELAIISKGRAE---------------------DDLRQR  103 (167)
T ss_dssp             HHHTCCSCEEEEEEC-CTTCHHHHHHHHHHHHHHHHCT--TEEEEEECHHHHH---------------------HHTTTT
T ss_pred             HHHHhCCCEEEEEEE-CCCChhHHHHHHHHHHHHHHCC--CcEEEEEECCCCH---------------------HHHHHH
Confidence            355678999999999 9999999999999999998775  5889988765432                     222223


Q ss_pred             ---CCCccCCCCCCccEEEEEcCCCcEEEEEeC
Q 028030          168 ---GVPADFFGSLPGRQTYILDKNGVVQLIYNN  197 (215)
Q Consensus       168 ---g~~~~~~g~~p~~~~~lid~~G~v~~~~~g  197 (215)
                         ++..     +|  +++++|++|+++..+.+
T Consensus       104 ~~~~v~~-----iP--t~i~~~~~G~~~~~~g~  129 (167)
T 1z6n_A          104 LALERIA-----IP--LVLVLDEEFNLLGRFVE  129 (167)
T ss_dssp             TTCSSCC-----SS--EEEEECTTCCEEEEEES
T ss_pred             HHcCCCC-----cC--eEEEECCCCCEEEEEcC
Confidence               3554     88  99999999999888754

>1x5d_A Protein disulfide-isomerase A6; PDIA6, ERP5, TXNDC7, thioredoxin like domain, redox, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.43  E-value=7.3e-13  Score=95.60  Aligned_cols=80  Identities=15%  Similarity=0.266  Sum_probs=66.8

Q ss_pred             CCCcEEEEEEcCCCChhhHHHHHHHHHHHHHHHH---cCcEEEEEeCCCHHHHHHHHHHcCCCeEEEEcCChhHHHHhCC
Q 028030           93 KGKPVVVYFYPADETPGCTKQACAFRDSYEKFKK---AGAEVIGISGDDSSSHKAFAKKYRLPYTLLSDEGNKVRKEWGV  169 (215)
Q Consensus        93 ~gk~~ll~f~~a~~C~~C~~~~~~l~~l~~~~~~---~~v~vv~vs~d~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~g~  169 (215)
                      .+|++||+|| ++||++|+...|.+.++++++++   .++.++.|+.+.                     +..+.+.|++
T Consensus        24 ~~~~~lv~f~-a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~~~vd~~~---------------------~~~l~~~~~v   81 (133)
T 1x5d_A           24 SEDVWMVEFY-APWCGHCKNLEPEWAAAASEVKEQTKGKVKLAAVDATV---------------------NQVLASRYGI   81 (133)
T ss_dssp             SSSEEEEEEE-CTTCHHHHTHHHHHHHHHHHHHHHTTTSEEEEEEETTT---------------------CCHHHHHHTC
T ss_pred             CCCeEEEEEE-CCCCHHHHhhcHHHHHHHHHHHhhcCCcEEEEEEECCC---------------------CHHHHHhCCC
Confidence            4789999999 99999999999999999999983   358888887643                     4578889999


Q ss_pred             CccCCCCCCccEEEEEcCCCcEEEEEeCCCCCC
Q 028030          170 PADFFGSLPGRQTYILDKNGVVQLIYNNQFQPE  202 (215)
Q Consensus       170 ~~~~~g~~p~~~~~lid~~G~v~~~~~g~~~~~  202 (215)
                      ..     +|  +++++++ |+++..+.|..+.+
T Consensus        82 ~~-----~P--t~~~~~~-g~~~~~~~G~~~~~  106 (133)
T 1x5d_A           82 RG-----FP--TIKIFQK-GESPVDYDGGRTRS  106 (133)
T ss_dssp             CS-----SS--EEEEEET-TEEEEEECSCCSHH
T ss_pred             Ce-----eC--eEEEEeC-CCceEEecCCCCHH
Confidence            87     99  9999986 88888888854433

>1dby_A Chloroplast thioredoxin M CH2; thioredoxin CH2, chloroplastic thioredoxin, oxidoreductase; NMR {Chlamydomonas reinhardtii} SCOP: c.47.1.1

Probab=99.43  E-value=1.2e-12  Score=90.95  Aligned_cols=76  Identities=20%  Similarity=0.336  Sum_probs=64.4

Q ss_pred             CCCcEEEEEEcCCCChhhHHHHHHHHHHHHHHHHcCcEEEEEeCCCHHHHHHHHHHcCCCeEEEEcCChhHHHHhCCCcc
Q 028030           93 KGKPVVVYFYPADETPGCTKQACAFRDSYEKFKKAGAEVIGISGDDSSSHKAFAKKYRLPYTLLSDEGNKVRKEWGVPAD  172 (215)
Q Consensus        93 ~gk~~ll~f~~a~~C~~C~~~~~~l~~l~~~~~~~~v~vv~vs~d~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~g~~~~  172 (215)
                      .||++||+|| ++||++|+...|.+.+++++++++ +.++.|+.|.                     +.++.+.|++.. 
T Consensus        18 ~~~~~lv~f~-~~~C~~C~~~~~~l~~~~~~~~~~-~~~~~v~~~~---------------------~~~~~~~~~v~~-   73 (107)
T 1dby_A           18 SSVPVLVDFW-APWCGPCRIIAPVVDEIAGEYKDK-LKCVKLNTDE---------------------SPNVASEYGIRS-   73 (107)
T ss_dssp             CSSCEEEEEE-CTTCHHHHHHHHHHHHHHHHTTTT-CEEEEEETTT---------------------CHHHHHHHTCCS-
T ss_pred             CCCcEEEEEE-CCCCHhHHHHHHHHHHHHHHhCCc-eEEEEEECCC---------------------CHHHHHHCCCCc-
Confidence            4789999999 999999999999999999988764 9999998753                     456788899987 


Q ss_pred             CCCCCCccEEEEEcCCCcEEEEEeCCC
Q 028030          173 FFGSLPGRQTYILDKNGVVQLIYNNQF  199 (215)
Q Consensus       173 ~~g~~p~~~~~lid~~G~v~~~~~g~~  199 (215)
                          +|  +++++ ++|+++..+.|..
T Consensus        74 ----~P--t~~~~-~~G~~~~~~~G~~   93 (107)
T 1dby_A           74 ----IP--TIMVF-KGGKKCETIIGAV   93 (107)
T ss_dssp             ----SC--EEEEE-SSSSEEEEEESCC
T ss_pred             ----CC--EEEEE-eCCEEEEEEeCCC
Confidence                89  66555 8999999988854

>1w4v_A Thioredoxin, mitochondrial; antioxidant enzyme, mitochondrion, electron TRA oxidoreductase; 1.80A {Homo sapiens} PDB: 1uvz_A 1w89_A

Probab=99.43  E-value=1.1e-12  Score=93.36  Aligned_cols=76  Identities=24%  Similarity=0.233  Sum_probs=65.4

Q ss_pred             CCCcEEEEEEcCCCChhhHHHHHHHHHHHHHHHHcCcEEEEEeCCCHHHHHHHHHHcCCCeEEEEcCChhHHHHhCCCcc
Q 028030           93 KGKPVVVYFYPADETPGCTKQACAFRDSYEKFKKAGAEVIGISGDDSSSHKAFAKKYRLPYTLLSDEGNKVRKEWGVPAD  172 (215)
Q Consensus        93 ~gk~~ll~f~~a~~C~~C~~~~~~l~~l~~~~~~~~v~vv~vs~d~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~g~~~~  172 (215)
                      .||++||+|| ++||++|+...+.|.++++++++ ++.++.|+.|.                     +.++.+.|++.. 
T Consensus        30 ~~k~vlv~f~-a~~C~~C~~~~~~l~~~~~~~~~-~v~~~~vd~d~---------------------~~~l~~~~~v~~-   85 (119)
T 1w4v_A           30 SETPVVVDFH-AQWCGPCKILGPRLEKMVAKQHG-KVVMAKVDIDD---------------------HTDLAIEYEVSA-   85 (119)
T ss_dssp             CSSCEEEEEE-CTTCHHHHHHHHHHHHHHHHTTT-SSEEEEEETTT---------------------THHHHHHTTCCS-
T ss_pred             CCCcEEEEEE-CCCCHHHHHHHHHHHHHHHHhcC-CeEEEEEeCCC---------------------CHHHHHHcCCCc-
Confidence            4789999999 99999999999999999998876 49999998753                     456888899987 


Q ss_pred             CCCCCCccEEEEEcCCCcEEEEEeCCC
Q 028030          173 FFGSLPGRQTYILDKNGVVQLIYNNQF  199 (215)
Q Consensus       173 ~~g~~p~~~~~lid~~G~v~~~~~g~~  199 (215)
                          +|  +++++ ++|+++..+.|..
T Consensus        86 ----~P--t~~~~-~~G~~~~~~~G~~  105 (119)
T 1w4v_A           86 ----VP--TVLAM-KNGDVVDKFVGIK  105 (119)
T ss_dssp             ----SS--EEEEE-ETTEEEEEEESCC
T ss_pred             ----cc--EEEEE-eCCcEEEEEcCCC
Confidence                89  88877 8999999888854

>3tco_A Thioredoxin (TRXA-1); disulfide oxidoreductase, oxidoreductase; 1.90A {Sulfolobus solfataricus} SCOP: c.47.1.0

Probab=99.43  E-value=9.7e-13  Score=91.38  Aligned_cols=77  Identities=23%  Similarity=0.300  Sum_probs=66.3

Q ss_pred             CCCcEEEEEEcCCCChhhHHHHHHHHHHHHHHHHcCcEEEEEeCCCHHHHHHHHHHcCCCeEEEEcCChhHHHHhCCCcc
Q 028030           93 KGKPVVVYFYPADETPGCTKQACAFRDSYEKFKKAGAEVIGISGDDSSSHKAFAKKYRLPYTLLSDEGNKVRKEWGVPAD  172 (215)
Q Consensus        93 ~gk~~ll~f~~a~~C~~C~~~~~~l~~l~~~~~~~~v~vv~vs~d~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~g~~~~  172 (215)
                      +|+++||+|| ++||++|+...+.+.++++++++ .+.++.|..|                     ...++.+.|++.. 
T Consensus        20 ~~~~~lv~f~-~~~C~~C~~~~~~~~~~~~~~~~-~~~~~~v~~~---------------------~~~~~~~~~~i~~-   75 (109)
T 3tco_A           20 NNKLVLVDCW-AEWCAPCHLYEPIYKKVAEKYKG-KAVFGRLNVD---------------------ENQKIADKYSVLN-   75 (109)
T ss_dssp             HSSEEEEEEE-CTTCHHHHHHHHHHHHHHHHTTT-TSEEEEEETT---------------------TCHHHHHHTTCCS-
T ss_pred             cCCeEEEEEE-CCCCHHHHhhhHHHHHHHHHhCC-CceEEEEccc---------------------cCHHHHHhcCccc-
Confidence            5899999999 99999999999999999999886 4888888764                     4456788899987 


Q ss_pred             CCCCCCccEEEEEcCCCcEEEEEeCCCC
Q 028030          173 FFGSLPGRQTYILDKNGVVQLIYNNQFQ  200 (215)
Q Consensus       173 ~~g~~p~~~~~lid~~G~v~~~~~g~~~  200 (215)
                          +|  +++++ ++|+++..+.|..+
T Consensus        76 ----~P--t~~~~-~~g~~~~~~~g~~~   96 (109)
T 3tco_A           76 ----IP--TTLIF-VNGQLVDSLVGAVD   96 (109)
T ss_dssp             ----SS--EEEEE-ETTEEEEEEESCCC
T ss_pred             ----CC--EEEEE-cCCcEEEeeeccCC
Confidence                89  88888 89999999988643

>2trx_A Thioredoxin; electron transport; 1.68A {Escherichia coli} SCOP: c.47.1.1 PDB: 1skr_B* 1skw_B* 1sl0_B* 1sks_B* 1sl2_B* 1t7p_B* 1t8e_B* 1tk0_B* 1tk5_B* 1tk8_B* 1tkd_B* 1sl1_B* 1x9s_B* 1x9w_B* 1xoa_A 1xob_A 1zyq_B* 2ajq_B* 2bto_T* 2h6x_A ...

Probab=99.43  E-value=1.1e-12  Score=91.26  Aligned_cols=76  Identities=17%  Similarity=0.308  Sum_probs=65.2

Q ss_pred             CCCcEEEEEEcCCCChhhHHHHHHHHHHHHHHHHcCcEEEEEeCCCHHHHHHHHHHcCCCeEEEEcCChhHHHHhCCCcc
Q 028030           93 KGKPVVVYFYPADETPGCTKQACAFRDSYEKFKKAGAEVIGISGDDSSSHKAFAKKYRLPYTLLSDEGNKVRKEWGVPAD  172 (215)
Q Consensus        93 ~gk~~ll~f~~a~~C~~C~~~~~~l~~l~~~~~~~~v~vv~vs~d~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~g~~~~  172 (215)
                      .+|+++|+|| ++||++|+...|.+.++++++++ ++.++.|+.|.                     +.++.+.|++.. 
T Consensus        19 ~~~~~~v~f~-~~~C~~C~~~~~~l~~~~~~~~~-~~~~~~v~~~~---------------------~~~~~~~~~v~~-   74 (108)
T 2trx_A           19 ADGAILVDFW-AEWCGPCKMIAPILDEIADEYQG-KLTVAKLNIDQ---------------------NPGTAPKYGIRG-   74 (108)
T ss_dssp             CSSEEEEEEE-CTTCHHHHHHHHHHHHHHHHTTT-TEEEEEEETTT---------------------CTTHHHHTTCCS-
T ss_pred             cCCeEEEEEE-CCCCHhHHHHHHHHHHHHHHhCC-CcEEEEEECCC---------------------CHHHHHHcCCcc-
Confidence            5789999999 99999999999999999998876 48888887643                     346788899987 


Q ss_pred             CCCCCCccEEEEEcCCCcEEEEEeCCC
Q 028030          173 FFGSLPGRQTYILDKNGVVQLIYNNQF  199 (215)
Q Consensus       173 ~~g~~p~~~~~lid~~G~v~~~~~g~~  199 (215)
                          +|  +++++ ++|+++..+.|..
T Consensus        75 ----~P--t~~~~-~~G~~~~~~~G~~   94 (108)
T 2trx_A           75 ----IP--TLLLF-KNGEVAATKVGAL   94 (108)
T ss_dssp             ----SS--EEEEE-ETTEEEEEEESCC
T ss_pred             ----cC--EEEEE-eCCEEEEEEecCC
Confidence                89  88888 8999999988854

>3die_A Thioredoxin, TRX; electron transport, SWAP domain, redox enzymology, oxidoreductase, redox-active center, transport; 1.85A {Staphylococcus aureus} SCOP: c.47.1.1 PDB: 2o7k_A 2o85_A 2o89_A 2o87_A

Probab=99.42  E-value=2.3e-12  Score=89.09  Aligned_cols=86  Identities=14%  Similarity=0.217  Sum_probs=69.9

Q ss_pred             CCCcEEEEEEcCCCChhhHHHHHHHHHHHHHHHHcCcEEEEEeCCCHHHHHHHHHHcCCCeEEEEcCChhHHHHhCCCcc
Q 028030           93 KGKPVVVYFYPADETPGCTKQACAFRDSYEKFKKAGAEVIGISGDDSSSHKAFAKKYRLPYTLLSDEGNKVRKEWGVPAD  172 (215)
Q Consensus        93 ~gk~~ll~f~~a~~C~~C~~~~~~l~~l~~~~~~~~v~vv~vs~d~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~g~~~~  172 (215)
                      ++|+++|+|| ++||++|+...+.+.+++++++++ +.++.|+.|                     .+..+.+.|++.. 
T Consensus        18 ~~~~~lv~f~-~~~C~~C~~~~~~~~~~~~~~~~~-~~~~~v~~~---------------------~~~~~~~~~~v~~-   73 (106)
T 3die_A           18 ESGVQLVDFW-ATACGPCKMIAPVLEELAADYEGK-ADILKLDVD---------------------ENPSTAAKYEVMS-   73 (106)
T ss_dssp             CSSEEEEEEE-CSBCHHHHHHHHHHHHHHHHTTTT-CEEEEEETT---------------------TCHHHHHHTTCCS-
T ss_pred             cCCcEEEEEE-CCCCHHHHHHhHHHHHHHHHhcCC-cEEEEEECC---------------------cCHHHHHhCCCcc-
Confidence            6899999999 999999999999999999999865 999999874                     3456778899987 


Q ss_pred             CCCCCCccEEEEEcCCCcEEEEEeCCCCCCccHHHHHHHHh
Q 028030          173 FFGSLPGRQTYILDKNGVVQLIYNNQFQPEKHIDETLKFLQ  213 (215)
Q Consensus       173 ~~g~~p~~~~~lid~~G~v~~~~~g~~~~~~~~~~il~~l~  213 (215)
                          +|  ++++++ +|+++..+.|..+    .+++.+.|+
T Consensus        74 ----~P--t~~~~~-~G~~~~~~~g~~~----~~~l~~~l~  103 (106)
T 3die_A           74 ----IP--TLIVFK-DGQPVDKVVGFQP----KENLAEVLD  103 (106)
T ss_dssp             ----BS--EEEEEE-TTEEEEEEESCCC----HHHHHHHHH
T ss_pred             ----cC--EEEEEe-CCeEEEEEeCCCC----HHHHHHHHH
Confidence                89  777775 9999999888532    344555544

>1nsw_A Thioredoxin, TRX; thermostability, electron transport; 1.90A {Alicyclobacillus acidocaldarius} SCOP: c.47.1.1 PDB: 1rqm_A 1quw_A 1nw2_A

Probab=99.42  E-value=5.1e-13  Score=92.47  Aligned_cols=76  Identities=18%  Similarity=0.259  Sum_probs=65.3

Q ss_pred             CCCcEEEEEEcCCCChhhHHHHHHHHHHHHHHHHcCcEEEEEeCCCHHHHHHHHHHcCCCeEEEEcCChhHHHHhCCCcc
Q 028030           93 KGKPVVVYFYPADETPGCTKQACAFRDSYEKFKKAGAEVIGISGDDSSSHKAFAKKYRLPYTLLSDEGNKVRKEWGVPAD  172 (215)
Q Consensus        93 ~gk~~ll~f~~a~~C~~C~~~~~~l~~l~~~~~~~~v~vv~vs~d~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~g~~~~  172 (215)
                      .||+++|+|| ++||++|+...+.+.+++++++++ +.++.|+.|.                     +.++.+.|++.. 
T Consensus        16 ~~~~~~v~f~-~~~C~~C~~~~~~l~~~~~~~~~~-v~~~~v~~~~---------------------~~~~~~~~~v~~-   71 (105)
T 1nsw_A           16 GDGPVLVDFW-AAWCGPCRMMAPVLEEFAEAHADK-VTVAKLNVDE---------------------NPETTSQFGIMS-   71 (105)
T ss_dssp             SSSCEEEEEE-CTTCHHHHHHHHHHHHHHHHSTTT-CEEEEEETTT---------------------CHHHHHHTTCCS-
T ss_pred             CCCcEEEEEE-CCCCHHHHHHHHHHHHHHHHhcCC-cEEEEEECcC---------------------CHHHHHHcCCcc-
Confidence            5789999999 999999999999999999988764 8999998754                     456778899987 


Q ss_pred             CCCCCCccEEEEEcCCCcEEEEEeCCC
Q 028030          173 FFGSLPGRQTYILDKNGVVQLIYNNQF  199 (215)
Q Consensus       173 ~~g~~p~~~~~lid~~G~v~~~~~g~~  199 (215)
                          +|  +++++ ++|+++..+.|..
T Consensus        72 ----~P--t~~~~-~~G~~~~~~~G~~   91 (105)
T 1nsw_A           72 ----IP--TLILF-KGGRPVKQLIGYQ   91 (105)
T ss_dssp             ----SS--EEEEE-ETTEEEEEEESCC
T ss_pred             ----cc--EEEEE-eCCeEEEEEecCC
Confidence                89  88888 8999999888854

>1xfl_A Thioredoxin H1; AT3G51030, structural genomics, protein structure initiative, CESG, center for eukaryotic structural genomics; NMR {Arabidopsis thaliana} SCOP: c.47.1.1

Probab=99.42  E-value=7.6e-13  Score=95.09  Aligned_cols=94  Identities=24%  Similarity=0.255  Sum_probs=70.9

Q ss_pred             CCCCCeEEeCCCCCeeecCC--cCCCcEEEEEEcCCCChhhHHHHHHHHHHHHHHHHcCcEEEEEeCCCHHHHHHHHHHc
Q 028030           72 QAPPSFTLKDQEGRNVSLSK--FKGKPVVVYFYPADETPGCTKQACAFRDSYEKFKKAGAEVIGISGDDSSSHKAFAKKY  149 (215)
Q Consensus        72 ~~~P~f~l~~~~g~~~~l~~--~~gk~~ll~f~~a~~C~~C~~~~~~l~~l~~~~~~~~v~vv~vs~d~~~~~~~~~~~~  149 (215)
                      ...+-+.+.+.++-.-.+.+  .+||++||+|| ++||++|+...|.|.+++++++  ++.++.|+.|            
T Consensus        14 ~~~~v~~l~~~~~~~~~l~~~~~~~k~vvv~f~-a~wC~~C~~~~~~l~~l~~~~~--~v~~~~vd~d------------   78 (124)
T 1xfl_A           14 EEGQVIACHTVETWNEQLQKANESKTLVVVDFT-ASWCGPCRFIAPFFADLAKKLP--NVLFLKVDTD------------   78 (124)
T ss_dssp             CCSCCEEESSHHHHHHHHHHHHHTTCEEEEEEE-CTTCHHHHHHHHHHHHHHHHCS--SEEEEEEETT------------
T ss_pred             CCCcEEEeCCHHHHHHHHHHhhhcCCEEEEEEE-CCCCHHHHHHHHHHHHHHHHCC--CcEEEEEECc------------
Confidence            33344555544332222222  35899999999 9999999999999999998886  6899999874            


Q ss_pred             CCCeEEEEcCChhHHHHhCCCccCCCCCCccEEEEEcCCCcEEEEEeC
Q 028030          150 RLPYTLLSDEGNKVRKEWGVPADFFGSLPGRQTYILDKNGVVQLIYNN  197 (215)
Q Consensus       150 ~~~~~~~~d~~~~~~~~~g~~~~~~g~~p~~~~~lid~~G~v~~~~~g  197 (215)
                               .+.++.+.|++..     +|  +++++ ++|+++..+.|
T Consensus        79 ---------~~~~l~~~~~v~~-----~P--t~~~~-~~G~~~~~~~G  109 (124)
T 1xfl_A           79 ---------ELKSVASDWAIQA-----MP--TFMFL-KEGKILDKVVG  109 (124)
T ss_dssp             ---------TSHHHHHHTTCCS-----SS--EEEEE-ETTEEEEEEES
T ss_pred             ---------cCHHHHHHcCCCc-----cC--EEEEE-ECCEEEEEEeC
Confidence                     3457888999987     99  65554 89999999888

>2av4_A Thioredoxin-like protein 4A (DIM1); U5 snRNP-SPECIFIC 15KD prote structural genomics, structural genomics consortium, SGC, U function; 1.73A {Plasmodium yoelii}

Probab=99.42  E-value=6.4e-13  Score=98.77  Aligned_cols=68  Identities=12%  Similarity=0.085  Sum_probs=58.6

Q ss_pred             CCcEEEEEEcCCCChhhHHHHHHHHHHHHHHHHcCcEEEEEeCCCHHHHHHHHHHcCCCeEEEEcCChhHHHHhCCCccC
Q 028030           94 GKPVVVYFYPADETPGCTKQACAFRDSYEKFKKAGAEVIGISGDDSSSHKAFAKKYRLPYTLLSDEGNKVRKEWGVPADF  173 (215)
Q Consensus        94 gk~~ll~f~~a~~C~~C~~~~~~l~~l~~~~~~~~v~vv~vs~d~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~g~~~~~  173 (215)
                      ++++||+|| |+||++|+...|.|.+++++++++ +.|+-|.+                     |+..+++..|++..  
T Consensus        41 ~k~VVVdF~-A~WCgPCk~m~PvleelA~e~~~~-v~f~kVDV---------------------De~~e~a~~y~V~s--   95 (160)
T 2av4_A           41 ERLVCIRFG-HDYDPDCMKMDELLYKVADDIKNF-CVIYLVDI---------------------TEVPDFNTMYELYD--   95 (160)
T ss_dssp             SSEEEEEEE-CTTSHHHHHHHHHHHHHHHHHTTT-EEEEEEET---------------------TTCCTTTTTTTCCS--
T ss_pred             CCEEEEEEE-CCCChhHHHHHHHHHHHHHHccCC-cEEEEEEC---------------------CCCHHHHHHcCCCC--
Confidence            589999999 999999999999999999999754 78888876                     56678899999997  


Q ss_pred             CCCCCccEEEEEcCCCcEE
Q 028030          174 FGSLPGRQTYILDKNGVVQ  192 (215)
Q Consensus       174 ~g~~p~~~~~lid~~G~v~  192 (215)
                         +|  +++++ ++|+.+
T Consensus        96 ---iP--T~~fF-k~G~~v  108 (160)
T 2av4_A           96 ---PV--SVMFF-YRNKHM  108 (160)
T ss_dssp             ---SE--EEEEE-ETTEEE
T ss_pred             ---CC--EEEEE-ECCEEE
Confidence               99  66666 688887

>2ppt_A Thioredoxin-2; thiredoxin, zinc finger, oxidoreductase; 1.92A {Rhodobacter capsulatus}

Probab=99.42  E-value=1.4e-12  Score=97.44  Aligned_cols=77  Identities=14%  Similarity=0.195  Sum_probs=66.7

Q ss_pred             CCCcEEEEEEcCCCChhhHHHHHHHHHHHHHHHHcCcEEEEEeCCCHHHHHHHHHHcCCCeEEEEcCChhHHHHhCCCcc
Q 028030           93 KGKPVVVYFYPADETPGCTKQACAFRDSYEKFKKAGAEVIGISGDDSSSHKAFAKKYRLPYTLLSDEGNKVRKEWGVPAD  172 (215)
Q Consensus        93 ~gk~~ll~f~~a~~C~~C~~~~~~l~~l~~~~~~~~v~vv~vs~d~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~g~~~~  172 (215)
                      .++++||+|| ++||++|+...|.|++++++++++ +.++.|+.|                     .+.++.+.|++.. 
T Consensus        63 ~~~~vlv~F~-a~wC~~C~~~~p~l~~la~~~~~~-v~~~~vd~~---------------------~~~~l~~~~~i~~-  118 (155)
T 2ppt_A           63 DDLPLLVDFW-APWCGPCRQMAPQFQAAAATLAGQ-VRLAKIDTQ---------------------AHPAVAGRHRIQG-  118 (155)
T ss_dssp             CSSCEEEEEE-CTTCHHHHHHHHHHHHHHHHHTTT-CEEEEEETT---------------------TSTHHHHHTTCCS-
T ss_pred             CCCcEEEEEE-CCCCHHHHHHHHHHHHHHHHccCC-EEEEEEeCC---------------------ccHHHHHHcCCCc-
Confidence            5789999999 999999999999999999999864 999999875                     3457888999987 


Q ss_pred             CCCCCCccEEEEEcCCCcEEEEEeCCCC
Q 028030          173 FFGSLPGRQTYILDKNGVVQLIYNNQFQ  200 (215)
Q Consensus       173 ~~g~~p~~~~~lid~~G~v~~~~~g~~~  200 (215)
                          +|  +++++ ++|+++..+.|..+
T Consensus       119 ----~P--t~~~~-~~G~~~~~~~G~~~  139 (155)
T 2ppt_A          119 ----IP--AFILF-HKGRELARAAGARP  139 (155)
T ss_dssp             ----SS--EEEEE-ETTEEEEEEESCCC
T ss_pred             ----CC--EEEEE-eCCeEEEEecCCCC
Confidence                99  77777 79999999988543

>2o8v_B Thioredoxin 1; disulfide crosslinked complex, oxidoreductase; 3.00A {Escherichia coli}

Probab=99.42  E-value=6.2e-13  Score=96.14  Aligned_cols=76  Identities=16%  Similarity=0.263  Sum_probs=65.6

Q ss_pred             CCCcEEEEEEcCCCChhhHHHHHHHHHHHHHHHHcCcEEEEEeCCCHHHHHHHHHHcCCCeEEEEcCChhHHHHhCCCcc
Q 028030           93 KGKPVVVYFYPADETPGCTKQACAFRDSYEKFKKAGAEVIGISGDDSSSHKAFAKKYRLPYTLLSDEGNKVRKEWGVPAD  172 (215)
Q Consensus        93 ~gk~~ll~f~~a~~C~~C~~~~~~l~~l~~~~~~~~v~vv~vs~d~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~g~~~~  172 (215)
                      .+|++||+|| ++||++|+...|.+.+++++++++ +.++.|+.|+                     +.++.+.|++.. 
T Consensus        39 ~~k~vlv~F~-a~wC~~C~~~~p~l~~l~~~~~~~-v~~~~vd~~~---------------------~~~l~~~~~v~~-   94 (128)
T 2o8v_B           39 ADGAILVDFW-AEWCGPAKMIAPILDEIADEYQGK-LTVAKLNIDQ---------------------NPGTAPKYGIRG-   94 (128)
T ss_dssp             CSSEEEEEEE-CSSCHHHHHTHHHHHHHHHHTTTT-EEEEEEETTT---------------------CCTTSGGGTCCS-
T ss_pred             cCCEEEEEEE-CCCCHHHHHHhHHHHHHHHHhcCC-eEEEEEECCC---------------------CHHHHHHcCCCc-
Confidence            5799999999 999999999999999999998764 9999998753                     346778899987 


Q ss_pred             CCCCCCccEEEEEcCCCcEEEEEeCCC
Q 028030          173 FFGSLPGRQTYILDKNGVVQLIYNNQF  199 (215)
Q Consensus       173 ~~g~~p~~~~~lid~~G~v~~~~~g~~  199 (215)
                          +|  +++++ ++|+++..+.|..
T Consensus        95 ----~P--t~~~~-~~G~~~~~~~G~~  114 (128)
T 2o8v_B           95 ----IP--TLLLF-KNGEVAATKVGAL  114 (128)
T ss_dssp             ----SS--EEEEE-ETTEEEEEEESCC
T ss_pred             ----cC--EEEEE-eCCEEEEEEcCCC
Confidence                89  88888 8999999988854

>3d6i_A Monothiol glutaredoxin-3; thioredoxin-like, electron transport, redox- active center, transport, oxidoreductase; HET: CME; 1.50A {Saccharomyces cerevisiae}

Probab=99.42  E-value=1.1e-12  Score=91.95  Aligned_cols=76  Identities=16%  Similarity=0.322  Sum_probs=63.2

Q ss_pred             CCCcEEEEEEcCCCChhhHHHHHHHHHHHHHHHHcCcEEEEEeCCCHHHHHHHHHHcCCCeEEEEcCChhHHHHhCCCcc
Q 028030           93 KGKPVVVYFYPADETPGCTKQACAFRDSYEKFKKAGAEVIGISGDDSSSHKAFAKKYRLPYTLLSDEGNKVRKEWGVPAD  172 (215)
Q Consensus        93 ~gk~~ll~f~~a~~C~~C~~~~~~l~~l~~~~~~~~v~vv~vs~d~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~g~~~~  172 (215)
                      +||+++|+|| ++||++|+...|.+.+++++++..++.++.|+.|.                     +.++.+.|++.. 
T Consensus        20 ~~~~~~v~f~-a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~vd~~~---------------------~~~~~~~~~v~~-   76 (112)
T 3d6i_A           20 GDKLIVLYFH-TSWAEPCKALKQVFEAISNEPSNSNVSFLSIDADE---------------------NSEISELFEISA-   76 (112)
T ss_dssp             TTCCEEEEEE-CCC--CHHHHHHHHHHHHHCGGGTTSEEEEEETTT---------------------CHHHHHHTTCCS-
T ss_pred             CCCEEEEEEE-CCCCHHHHHHHHHHHHHHHhcCCCCEEEEEEeccc---------------------CHHHHHHcCCCc-
Confidence            4899999999 99999999999999999998755579999998764                     346888899987 


Q ss_pred             CCCCCCccEEEEEcCCCcEEEEEeCC
Q 028030          173 FFGSLPGRQTYILDKNGVVQLIYNNQ  198 (215)
Q Consensus       173 ~~g~~p~~~~~lid~~G~v~~~~~g~  198 (215)
                          +|  +++++ ++|+++..+.|.
T Consensus        77 ----~P--t~~~~-~~G~~~~~~~G~   95 (112)
T 3d6i_A           77 ----VP--YFIII-HKGTILKELSGA   95 (112)
T ss_dssp             ----SS--EEEEE-ETTEEEEEECSC
T ss_pred             ----cc--EEEEE-ECCEEEEEecCC
Confidence                99  76666 799999998885

>1ep7_A Thioredoxin CH1, H-type; electron transport; 2.10A {Chlamydomonas reinhardtii} SCOP: c.47.1.1 PDB: 1tof_A 1ep8_A

Probab=99.42  E-value=1.4e-12  Score=91.35  Aligned_cols=74  Identities=23%  Similarity=0.231  Sum_probs=63.6

Q ss_pred             CCcEEEEEEcCCCChhhHHHHHHHHHHHHHHHHcCcEEEEEeCCCHHHHHHHHHHcCCCeEEEEcCChhHHHHhCCCccC
Q 028030           94 GKPVVVYFYPADETPGCTKQACAFRDSYEKFKKAGAEVIGISGDDSSSHKAFAKKYRLPYTLLSDEGNKVRKEWGVPADF  173 (215)
Q Consensus        94 gk~~ll~f~~a~~C~~C~~~~~~l~~l~~~~~~~~v~vv~vs~d~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~g~~~~~  173 (215)
                      ||++||+|| ++||++|+...+.|.++++++++ ++.++.|+.|.                     +.++.+.|++..  
T Consensus        24 ~~~~vv~f~-~~~C~~C~~~~~~l~~~~~~~~~-~~~~~~vd~~~---------------------~~~~~~~~~v~~--   78 (112)
T 1ep7_A           24 HKPIVVDFT-ATWCGPCKMIAPLFETLSNDYAG-KVIFLKVDVDA---------------------VAAVAEAAGITA--   78 (112)
T ss_dssp             TCCEEEEEE-CTTCHHHHHHHHHHHHHHHHTTT-TSEEEEEETTT---------------------THHHHHHHTCCB--
T ss_pred             CCeEEEEEE-CCCCHHHHHHHHHHHHHHHHcCC-CeEEEEEECCc---------------------hHHHHHHcCCCc--
Confidence            899999999 99999999999999999999876 59999998743                     456788899987  


Q ss_pred             CCCCCccEEEEEcCCCcEEEEEeCC
Q 028030          174 FGSLPGRQTYILDKNGVVQLIYNNQ  198 (215)
Q Consensus       174 ~g~~p~~~~~lid~~G~v~~~~~g~  198 (215)
                         +|  +++ +.++|+++..+.|.
T Consensus        79 ---~P--t~~-~~~~G~~~~~~~G~   97 (112)
T 1ep7_A           79 ---MP--TFH-VYKDGVKADDLVGA   97 (112)
T ss_dssp             ---SS--EEE-EEETTEEEEEEESC
T ss_pred             ---cc--EEE-EEECCeEEEEEcCC
Confidence               89  644 45899999998885

>1thx_A Thioredoxin, thioredoxin 2; oxido-reductase, electron transport; 1.60A {Nostoc SP} SCOP: c.47.1.1

Probab=99.41  E-value=1.7e-12  Score=91.15  Aligned_cols=77  Identities=17%  Similarity=0.265  Sum_probs=66.3

Q ss_pred             CCCcEEEEEEcCCCChhhHHHHHHHHHHHHHHHHcCcEEEEEeCCCHHHHHHHHHHcCCCeEEEEcCChhHHHHhCCCcc
Q 028030           93 KGKPVVVYFYPADETPGCTKQACAFRDSYEKFKKAGAEVIGISGDDSSSHKAFAKKYRLPYTLLSDEGNKVRKEWGVPAD  172 (215)
Q Consensus        93 ~gk~~ll~f~~a~~C~~C~~~~~~l~~l~~~~~~~~v~vv~vs~d~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~g~~~~  172 (215)
                      .|+++||.|| ++||++|+...+.+.+++++++++ +.++.|+.|.                     +..+.+.|++.. 
T Consensus        24 ~~~~~lv~f~-~~~C~~C~~~~~~l~~~~~~~~~~-v~~~~v~~~~---------------------~~~~~~~~~v~~-   79 (115)
T 1thx_A           24 AEQPVLVYFW-ASWCGPCQLMSPLINLAANTYSDR-LKVVKLEIDP---------------------NPTTVKKYKVEG-   79 (115)
T ss_dssp             CSSCEEEEEE-CTTCTTHHHHHHHHHHHHHHTTTT-CEEEEEESTT---------------------CHHHHHHTTCCS-
T ss_pred             CCceEEEEEE-CCCCHHHHHhHHHHHHHHHHhCCc-EEEEEEEcCC---------------------CHHHHHHcCCCc-
Confidence            5799999999 999999999999999999998864 9999998754                     346788899987 


Q ss_pred             CCCCCCccEEEEEcCCCcEEEEEeCCCC
Q 028030          173 FFGSLPGRQTYILDKNGVVQLIYNNQFQ  200 (215)
Q Consensus       173 ~~g~~p~~~~~lid~~G~v~~~~~g~~~  200 (215)
                          +|  +++++ ++|+++..+.|..+
T Consensus        80 ----~P--t~~~~-~~G~~~~~~~g~~~  100 (115)
T 1thx_A           80 ----VP--ALRLV-KGEQILDSTEGVIS  100 (115)
T ss_dssp             ----SS--EEEEE-ETTEEEEEEESCCC
T ss_pred             ----ee--EEEEE-cCCEEEEEecCCCC
Confidence                89  88888 89999998888543

>2dml_A Protein disulfide-isomerase A6; thioredoxin domain-containing protein 7, endoplasmic reticulum, redox-active center, structural genomics, NPPSFA; NMR {Mus musculus}

Probab=99.41  E-value=4.8e-13  Score=96.34  Aligned_cols=91  Identities=20%  Similarity=0.284  Sum_probs=72.1

Q ss_pred             CCCcEEEEEEcCCCChhhHHHHHHHHHHHHHHHHcCcEEEEEeCCCHHHHHHHHHHcCCCeEEEEcCChhHHHHhCCCcc
Q 028030           93 KGKPVVVYFYPADETPGCTKQACAFRDSYEKFKKAGAEVIGISGDDSSSHKAFAKKYRLPYTLLSDEGNKVRKEWGVPAD  172 (215)
Q Consensus        93 ~gk~~ll~f~~a~~C~~C~~~~~~l~~l~~~~~~~~v~vv~vs~d~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~g~~~~  172 (215)
                      .+|++||+|| ++||++|+...|.+.++++++++. +.++.|+.|                     .+.++.+.|++.. 
T Consensus        34 ~~~~~lv~f~-a~wC~~C~~~~~~~~~~~~~~~~~-~~~~~vd~~---------------------~~~~l~~~~~v~~-   89 (130)
T 2dml_A           34 SDGLWLVEFY-APWCGHCQRLTPEWKKAATALKDV-VKVGAVNAD---------------------KHQSLGGQYGVQG-   89 (130)
T ss_dssp             CSSCEEEEEE-CTTCSTTGGGHHHHHHHHHHTTTT-SEEEEEETT---------------------TCHHHHHHHTCCS-
T ss_pred             CCCeEEEEEE-CCCCHHHHhhCHHHHHHHHHhcCc-eEEEEEeCC---------------------CCHHHHHHcCCCc-
Confidence            4789999999 999999999999999999998764 888888763                     4567888999987 


Q ss_pred             CCCCCCccEEEEEcCCCcEEEEEeCCCCCCccHHHHHHHHh
Q 028030          173 FFGSLPGRQTYILDKNGVVQLIYNNQFQPEKHIDETLKFLQ  213 (215)
Q Consensus       173 ~~g~~p~~~~~lid~~G~v~~~~~g~~~~~~~~~~il~~l~  213 (215)
                          +|  ++++++++|+++..+.|....+...+.+.+.++
T Consensus        90 ----~P--t~~~~~~~~~~~~~~~G~~~~~~l~~~l~~~l~  124 (130)
T 2dml_A           90 ----FP--TIKIFGANKNKPEDYQGGRTGEAIVDAALSALR  124 (130)
T ss_dssp             ----SS--EEEEESSCTTSCEECCSCCSHHHHHHHHHHHHH
T ss_pred             ----cC--EEEEEeCCCCeEEEeecCCCHHHHHHHHHHHHh
Confidence                89  999999999866777775444444444444443

>3gnj_A Thioredoxin domain protein; APC92103, STR genomics, PSI-2, protein structure initiative, midwest CENT structural genomics; 1.99A {Desulfitobacterium hafniense dcb-2} SCOP: c.47.1.0

Probab=99.40  E-value=2.4e-12  Score=89.83  Aligned_cols=77  Identities=14%  Similarity=0.260  Sum_probs=65.7

Q ss_pred             CCCcEEEEEEcCCCChhhHHHHHHHHHHHHHHHHcCcEEEEEeCCCHHHHHHHHHHcCCCeEEEEcCChhHHHHhCCCcc
Q 028030           93 KGKPVVVYFYPADETPGCTKQACAFRDSYEKFKKAGAEVIGISGDDSSSHKAFAKKYRLPYTLLSDEGNKVRKEWGVPAD  172 (215)
Q Consensus        93 ~gk~~ll~f~~a~~C~~C~~~~~~l~~l~~~~~~~~v~vv~vs~d~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~g~~~~  172 (215)
                      .++++||.|| ++||++|+...+.+.++++++++ ++.++.|+.|                     .+..+.+.|++.. 
T Consensus        21 ~~~~vlv~f~-a~~C~~C~~~~~~~~~~~~~~~~-~v~~~~vd~~---------------------~~~~l~~~~~v~~-   76 (111)
T 3gnj_A           21 EGKACLVMFS-RKNCHVCQKVTPVLEELRLNYEE-SFGFYYVDVE---------------------EEKTLFQRFSLKG-   76 (111)
T ss_dssp             SCCCEEEEEE-CSSCHHHHHHHHHHHHHHHHTTT-TSEEEEEETT---------------------TCHHHHHHTTCCS-
T ss_pred             cCCEEEEEEe-CCCChhHHHHHHHHHHHHHHcCC-ceEEEEEECC---------------------cChhHHHhcCCCc-
Confidence            4789999999 99999999999999999999886 4999999874                     3447788899987 


Q ss_pred             CCCCCCccEEEEEcCCCcEEEEEeCCCC
Q 028030          173 FFGSLPGRQTYILDKNGVVQLIYNNQFQ  200 (215)
Q Consensus       173 ~~g~~p~~~~~lid~~G~v~~~~~g~~~  200 (215)
                          +|  +++++ ++|+++..+.|..+
T Consensus        77 ----~P--t~~~~-~~g~~~~~~~g~~~   97 (111)
T 3gnj_A           77 ----VP--QILYF-KDGEYKGKMAGDVE   97 (111)
T ss_dssp             ----SC--EEEEE-ETTEEEEEEESSCC
T ss_pred             ----CC--EEEEE-ECCEEEEEEeccCC
Confidence                89  88888 79999988888643

>2i4a_A Thioredoxin; acidophIle, disulfide exchange, oxidoreductase; 1.00A {Acetobacter aceti}

Probab=99.40  E-value=4.4e-12  Score=87.80  Aligned_cols=76  Identities=18%  Similarity=0.255  Sum_probs=65.8

Q ss_pred             CCCcEEEEEEcCCCChhhHHHHHHHHHHHHHHHHcCcEEEEEeCCCHHHHHHHHHHcCCCeEEEEcCChhHHHHhCCCcc
Q 028030           93 KGKPVVVYFYPADETPGCTKQACAFRDSYEKFKKAGAEVIGISGDDSSSHKAFAKKYRLPYTLLSDEGNKVRKEWGVPAD  172 (215)
Q Consensus        93 ~gk~~ll~f~~a~~C~~C~~~~~~l~~l~~~~~~~~v~vv~vs~d~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~g~~~~  172 (215)
                      .++++||.|| ++||++|+...+.+.++++++++ ++.++.|+.|+                     +.++.+.|++.. 
T Consensus        19 ~~~~~lv~f~-~~~C~~C~~~~~~~~~~~~~~~~-~~~~~~v~~~~---------------------~~~~~~~~~v~~-   74 (107)
T 2i4a_A           19 ASGLVLVDFW-AEWCGPCKMIGPALGEIGKEFAG-KVTVAKVNIDD---------------------NPETPNAYQVRS-   74 (107)
T ss_dssp             CSSEEEEEEE-CTTCHHHHHHHHHHHHHHHHHTT-SEEEEEEETTT---------------------CCHHHHHTTCCS-
T ss_pred             CCCEEEEEEE-CCCChhHHHHhHHHHHHHHHhCC-cEEEEEEECCC---------------------CHHHHHhcCCCc-
Confidence            5789999999 99999999999999999999986 59999998653                     346788899987 


Q ss_pred             CCCCCCccEEEEEcCCCcEEEEEeCCC
Q 028030          173 FFGSLPGRQTYILDKNGVVQLIYNNQF  199 (215)
Q Consensus       173 ~~g~~p~~~~~lid~~G~v~~~~~g~~  199 (215)
                          +|  +++++ ++|+++..+.|..
T Consensus        75 ----~P--t~~~~-~~G~~~~~~~G~~   94 (107)
T 2i4a_A           75 ----IP--TLMLV-RDGKVIDKKVGAL   94 (107)
T ss_dssp             ----SS--EEEEE-ETTEEEEEEESCC
T ss_pred             ----cC--EEEEE-eCCEEEEEecCCC
Confidence                89  88888 8999999888853

>4euy_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, unknown function; 2.90A {Bacillus cereus}

Probab=99.40  E-value=7.6e-13  Score=91.96  Aligned_cols=75  Identities=15%  Similarity=0.170  Sum_probs=56.6

Q ss_pred             CCCcEEEEEEcCCCChhhHHHHHHHHHHHHHHHHcCcEEEEEeCCCHHHHHHHHHHcCCCeEEEEcCChhHHHHhCCCcc
Q 028030           93 KGKPVVVYFYPADETPGCTKQACAFRDSYEKFKKAGAEVIGISGDDSSSHKAFAKKYRLPYTLLSDEGNKVRKEWGVPAD  172 (215)
Q Consensus        93 ~gk~~ll~f~~a~~C~~C~~~~~~l~~l~~~~~~~~v~vv~vs~d~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~g~~~~  172 (215)
                      .+|+++|+|| ++||++|+...|.+.+++++++  ++.++.|+.|                     .+.++...|++.. 
T Consensus        17 ~~~~vlv~f~-a~wC~~C~~~~p~~~~~~~~~~--~~~~~~vd~~---------------------~~~~l~~~~~v~~-   71 (105)
T 4euy_A           17 EQQLVLLFIK-TENCGVCDVMLRKVNYVLENYN--YVEKIEILLQ---------------------DMQEIAGRYAVFT-   71 (105)
T ss_dssp             CSSEEEEEEE-ESSCHHHHHHHHHHHHHHHTCT--TEEEEEEEEC---------------------CC---------CC-
T ss_pred             cCCCEEEEEe-CCCCcchHHHHHHHHHHHHHcC--CceEEEEECC---------------------CCHHHHHhcCCCC-
Confidence            5799999999 9999999999999999999884  5888888754                     3446778889987 


Q ss_pred             CCCCCCccEEEEEcCCCcEEEEEeCCC
Q 028030          173 FFGSLPGRQTYILDKNGVVQLIYNNQF  199 (215)
Q Consensus       173 ~~g~~p~~~~~lid~~G~v~~~~~g~~  199 (215)
                          +|  +++++ ++|+++..+.|..
T Consensus        72 ----~P--t~~~~-~~G~~~~~~~g~~   91 (105)
T 4euy_A           72 ----GP--TVLLF-YNGKEILRESRFI   91 (105)
T ss_dssp             ----CC--EEEEE-ETTEEEEEEESSC
T ss_pred             ----CC--EEEEE-eCCeEEEEEeCCc
Confidence                89  88888 5999999988854

>3d22_A TRXH4, thioredoxin H-type; electron transport, cytoplasm, redox-active center, transport, oxidoreductase; 1.60A {Populus trichocarpa x populusdeltoides} PDB: 3d21_A

Probab=99.39  E-value=1.9e-12  Score=94.41  Aligned_cols=80  Identities=20%  Similarity=0.216  Sum_probs=66.8

Q ss_pred             eecCCcCCCcEEEEEEcCCCChhhHHHHHHHHHHHHHHHHcCcEEEEEeCCCHHHHHHHHHHcCCCeEEEEcCChhHHHH
Q 028030           87 VSLSKFKGKPVVVYFYPADETPGCTKQACAFRDSYEKFKKAGAEVIGISGDDSSSHKAFAKKYRLPYTLLSDEGNKVRKE  166 (215)
Q Consensus        87 ~~l~~~~gk~~ll~f~~a~~C~~C~~~~~~l~~l~~~~~~~~v~vv~vs~d~~~~~~~~~~~~~~~~~~~~d~~~~~~~~  166 (215)
                      +..++.+||++||+|| ++||++|+...|.+.+++++++  ++.++.|+.|                     .+.++.+.
T Consensus        39 ~~~~~~~~k~vvv~f~-a~wC~~C~~~~~~l~~l~~~~~--~v~~~~v~~~---------------------~~~~~~~~   94 (139)
T 3d22_A           39 LSEASRDGKIVLANFS-ARWCGPSRQIAPYYIELSENYP--SLMFLVIDVD---------------------ELSDFSAS   94 (139)
T ss_dssp             HHHHHHHTCCEEEEEE-CTTCHHHHHHHHHHHHHHHHCT--TSEEEEEETT---------------------TSHHHHHH
T ss_pred             HHHHhhcCCEEEEEEE-CCCCHHHHHHHHHHHHHHHHCC--CCEEEEEeCc---------------------ccHHHHHH
Confidence            3333456899999999 9999999999999999998884  6999999875                     34568888


Q ss_pred             hCCCccCCCCCCccEEEEEcCCCcEEEEEeCC
Q 028030          167 WGVPADFFGSLPGRQTYILDKNGVVQLIYNNQ  198 (215)
Q Consensus       167 ~g~~~~~~g~~p~~~~~lid~~G~v~~~~~g~  198 (215)
                      |++..     +|  +++++ ++|+++..+.|.
T Consensus        95 ~~v~~-----~P--t~~~~-~~G~~~~~~~G~  118 (139)
T 3d22_A           95 WEIKA-----TP--TFFFL-RDGQQVDKLVGA  118 (139)
T ss_dssp             TTCCE-----ES--EEEEE-ETTEEEEEEESC
T ss_pred             cCCCc-----cc--EEEEE-cCCeEEEEEeCC
Confidence            99987     89  66666 899999999885

>2wz9_A Glutaredoxin-3; protein binding; 1.55A {Homo sapiens} PDB: 2diy_A

Probab=99.39  E-value=2.5e-12  Score=95.67  Aligned_cols=74  Identities=12%  Similarity=0.249  Sum_probs=64.9

Q ss_pred             CCCcEEEEEEcCCCChhhHHHHHHHHHHHHHHHHcCcEEEEEeCCCHHHHHHHHHHcCCCeEEEEcCChhHHHHhCCCcc
Q 028030           93 KGKPVVVYFYPADETPGCTKQACAFRDSYEKFKKAGAEVIGISGDDSSSHKAFAKKYRLPYTLLSDEGNKVRKEWGVPAD  172 (215)
Q Consensus        93 ~gk~~ll~f~~a~~C~~C~~~~~~l~~l~~~~~~~~v~vv~vs~d~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~g~~~~  172 (215)
                      +||++||+|| ++||++|+...|.+.+++++++  ++.++.|+.|.                     +..+.+.|++.. 
T Consensus        31 ~~~~vvv~F~-a~wC~~C~~~~p~l~~l~~~~~--~v~~~~vd~~~---------------------~~~l~~~~~v~~-   85 (153)
T 2wz9_A           31 AKSLLVVHFW-APWAPQCAQMNEVMAELAKELP--QVSFVKLEAEG---------------------VPEVSEKYEISS-   85 (153)
T ss_dssp             TTSCEEEEEE-CTTCHHHHHHHHHHHHHHHHCT--TSEEEEEETTT---------------------SHHHHHHTTCCS-
T ss_pred             CCCeEEEEEE-CCCCHhHHHHHHHHHHHHHHcC--CeEEEEEECCC---------------------CHHHHHHcCCCC-
Confidence            4899999999 9999999999999999998874  69999998754                     446888899987 


Q ss_pred             CCCCCCccEEEEEcCCCcEEEEEeCC
Q 028030          173 FFGSLPGRQTYILDKNGVVQLIYNNQ  198 (215)
Q Consensus       173 ~~g~~p~~~~~lid~~G~v~~~~~g~  198 (215)
                          +|  ++++++ +|+++..+.|.
T Consensus        86 ----~P--t~~~~~-~G~~~~~~~G~  104 (153)
T 2wz9_A           86 ----VP--TFLFFK-NSQKIDRLDGA  104 (153)
T ss_dssp             ----SS--EEEEEE-TTEEEEEEESS
T ss_pred             ----CC--EEEEEE-CCEEEEEEeCC
Confidence                99  999998 99999988884

>3hz4_A Thioredoxin; NYSGXRC, PSI-II, reduced form, protein structure initiative, structural genomics; 2.30A {Methanosarcina mazei}

Probab=99.39  E-value=7.2e-13  Score=97.13  Aligned_cols=78  Identities=23%  Similarity=0.306  Sum_probs=65.8

Q ss_pred             CCCcEEEEEEcCCCChhhHHHHHHHHHHHHHHHHcCcEEEEEeCCCHHHHHHHHHHcCCCeEEEEcCChhHHHHhCCCcc
Q 028030           93 KGKPVVVYFYPADETPGCTKQACAFRDSYEKFKKAGAEVIGISGDDSSSHKAFAKKYRLPYTLLSDEGNKVRKEWGVPAD  172 (215)
Q Consensus        93 ~gk~~ll~f~~a~~C~~C~~~~~~l~~l~~~~~~~~v~vv~vs~d~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~g~~~~  172 (215)
                      .+|++||+|| ++||++|+...|.+.+++++++++ +.++.|..|                     .+.++.+.|++.. 
T Consensus        23 ~~~~vlv~F~-a~wC~~C~~~~~~l~~l~~~~~~~-v~~~~vd~~---------------------~~~~l~~~~~v~~-   78 (140)
T 3hz4_A           23 SKKPVVVMFY-SPACPYCKAMEPYFEEYAKEYGSS-AVFGRINIA---------------------TNPWTAEKYGVQG-   78 (140)
T ss_dssp             CSSCEEEEEE-CTTCHHHHHHHHHHHHHHHHHTTT-SEEEEEETT---------------------TCHHHHHHHTCCE-
T ss_pred             CCCcEEEEEE-CCCChhHHHHHHHHHHHHHHhCCc-eEEEEEECC---------------------cCHhHHHHCCCCc-
Confidence            4799999999 999999999999999999999864 999999864                     3446778899987 


Q ss_pred             CCCCCCccEEEEEcCCCcEEEEEeCCCCC
Q 028030          173 FFGSLPGRQTYILDKNGVVQLIYNNQFQP  201 (215)
Q Consensus       173 ~~g~~p~~~~~lid~~G~v~~~~~g~~~~  201 (215)
                          +|  +++++ ++|+++..+.|....
T Consensus        79 ----~P--t~~~~-~~G~~~~~~~G~~~~  100 (140)
T 3hz4_A           79 ----TP--TFKFF-CHGRPVWEQVGQIYP  100 (140)
T ss_dssp             ----ES--EEEEE-ETTEEEEEEESSCCH
T ss_pred             ----CC--EEEEE-eCCcEEEEEcCCCCH
Confidence                89  66666 899999999886443

>2dj3_A Protein disulfide-isomerase A4; protein ERP-72, ERP72, CAI, structural genomics, NPPSFA; NMR {Mus musculus}

Probab=99.39  E-value=7.6e-13  Score=95.68  Aligned_cols=91  Identities=14%  Similarity=0.244  Sum_probs=66.5

Q ss_pred             EEeCCCCCeeecCCc-CCCcEEEEEEcCCCChhhHHHHHHHHHHHHHHHHc-CcEEEEEeCCCHHHHHHHHHHcCCCeEE
Q 028030           78 TLKDQEGRNVSLSKF-KGKPVVVYFYPADETPGCTKQACAFRDSYEKFKKA-GAEVIGISGDDSSSHKAFAKKYRLPYTL  155 (215)
Q Consensus        78 ~l~~~~g~~~~l~~~-~gk~~ll~f~~a~~C~~C~~~~~~l~~l~~~~~~~-~v~vv~vs~d~~~~~~~~~~~~~~~~~~  155 (215)
                      .+.+++++.+...-. .+|++||+|| ++||++|+...|.|.++++++++. ++.++.|..+.                 
T Consensus         8 ~v~~l~~~~~~~~~~~~~~~vlv~f~-a~wC~~C~~~~p~~~~~~~~~~~~~~~~~~~vd~~~-----------------   69 (133)
T 2dj3_A            8 PVKVVVGKTFDAIVMDPKKDVLIEFY-APWCGHCKQLEPIYTSLGKKYKGQKDLVIAKMDATA-----------------   69 (133)
T ss_dssp             SSEECCTTTCCCCCTCTTSEEEEEEC-CTTCSHHHHHHHHHHHHHHHHTTSSSEEEEEECTTT-----------------
T ss_pred             ceEEEcCCCHHHHhccCCCcEEEEEE-CCCChhHHHHHHHHHHHHHHhcCCCCEEEEEecCCc-----------------
Confidence            344455554443322 4899999999 999999999999999999999853 58888887643                 


Q ss_pred             EEcCChhHHHHhCCCccCCCCCCccEEEEEcCCCcEEE-EEeC
Q 028030          156 LSDEGNKVRKEWGVPADFFGSLPGRQTYILDKNGVVQL-IYNN  197 (215)
Q Consensus       156 ~~d~~~~~~~~~g~~~~~~g~~p~~~~~lid~~G~v~~-~~~g  197 (215)
                          +..+...|++..     +|  ++++++++|++.. .+.|
T Consensus        70 ----~~~~~~~~~v~~-----~P--t~~~~~~g~~~~~~~~~g  101 (133)
T 2dj3_A           70 ----NDITNDQYKVEG-----FP--TIYFAPSGDKKNPIKFEG  101 (133)
T ss_dssp             ----SCCCCSSCCCSS-----SS--EEEEECTTCTTSCEECCS
T ss_pred             ----CHHHHhhcCCCc-----CC--EEEEEeCCCcccceEecC
Confidence                234556788887     89  9999988776543 3553

>2j23_A Thioredoxin; immune protein, autoreactivity, cross-reactivity, IGE, fungi, epitope, allergen; 1.41A {Malassezia sympodialis}

Probab=99.39  E-value=2e-12  Score=92.34  Aligned_cols=76  Identities=20%  Similarity=0.234  Sum_probs=65.6

Q ss_pred             CCCcEEEEEEcCCCChhhHHHHHHHHHHHHHHHHcCcEEEEEeCCCHHHHHHHHHHcCCCeEEEEcCChhHHHHhCCCcc
Q 028030           93 KGKPVVVYFYPADETPGCTKQACAFRDSYEKFKKAGAEVIGISGDDSSSHKAFAKKYRLPYTLLSDEGNKVRKEWGVPAD  172 (215)
Q Consensus        93 ~gk~~ll~f~~a~~C~~C~~~~~~l~~l~~~~~~~~v~vv~vs~d~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~g~~~~  172 (215)
                      +||++||+|| ++||++|+...+.|.+++++++++++.++.|+.|.                     +.++.+.|++.. 
T Consensus        32 ~~k~vvv~f~-a~~C~~C~~~~~~l~~l~~~~~~~~v~~~~vd~d~---------------------~~~~~~~~~v~~-   88 (121)
T 2j23_A           32 GDKVVVIDFW-ATWCGPCKMIGPVFEKISDTPAGDKVGFYKVDVDE---------------------QSQIAQEVGIRA-   88 (121)
T ss_dssp             SSSCEEEEEE-CTTCSTHHHHHHHHHHHHTSTHHHHSEEEEEETTT---------------------CHHHHHHHTCCS-
T ss_pred             CCCEEEEEEE-CCCCHhHHHHHHHHHHHHHHCcCCcEEEEEEECcC---------------------CHHHHHHcCCCc-
Confidence            5789999999 99999999999999999999987679999998754                     456788899987 


Q ss_pred             CCCCCCccEEEEEcCCCcEEEEEeCC
Q 028030          173 FFGSLPGRQTYILDKNGVVQLIYNNQ  198 (215)
Q Consensus       173 ~~g~~p~~~~~lid~~G~v~~~~~g~  198 (215)
                          +|  +++++ ++|+++..+.|.
T Consensus        89 ----~P--t~~~~-~~G~~~~~~~G~  107 (121)
T 2j23_A           89 ----MP--TFVFF-KNGQKIDTVVGA  107 (121)
T ss_dssp             ----SS--EEEEE-ETTEEEEEEESS
T ss_pred             ----cc--EEEEE-ECCeEEeeEcCC
Confidence                99  77666 699999998885

>2oe3_A Thioredoxin-3; electron transport, alpha/beta sandwich, oxidized, dimer; 1.80A {Saccharomyces cerevisiae} PDB: 2oe1_A 2oe0_A

Probab=99.38  E-value=1.7e-12  Score=91.90  Aligned_cols=84  Identities=17%  Similarity=0.200  Sum_probs=67.5

Q ss_pred             CCCcEEEEEEcCCCChhhHHHHHHHHHHHHHHHHcCcEEEEEeCCCHHHHHHHHHHcCCCeEEEEcCChhHHHHhCCCcc
Q 028030           93 KGKPVVVYFYPADETPGCTKQACAFRDSYEKFKKAGAEVIGISGDDSSSHKAFAKKYRLPYTLLSDEGNKVRKEWGVPAD  172 (215)
Q Consensus        93 ~gk~~ll~f~~a~~C~~C~~~~~~l~~l~~~~~~~~v~vv~vs~d~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~g~~~~  172 (215)
                      +||++||+|| ++||++|+...|.|.++++++++  +.++.|+.|.                     +.++.+.|++.. 
T Consensus        29 ~~k~vvv~F~-a~wC~~C~~~~p~l~~~~~~~~~--v~~~~vd~~~---------------------~~~l~~~~~v~~-   83 (114)
T 2oe3_A           29 QNDKLVIDFY-ATWCGPCKMMQPHLTKLIQAYPD--VRFVKCDVDE---------------------SPDIAKECEVTA-   83 (114)
T ss_dssp             HCSEEEEEEE-CTTCHHHHHTHHHHHHHHHHCTT--SEEEEEETTT---------------------CHHHHHHTTCCS-
T ss_pred             CCCEEEEEEE-CCCCHHHHHHHHHHHHHHHHCCC--CEEEEEECCC---------------------CHHHHHHCCCCc-
Confidence            5799999999 99999999999999999988874  8999998653                     346788899987 


Q ss_pred             CCCCCCccEEEEEcCCCcEEEEEeCCCCCCccHHHHHHHHh
Q 028030          173 FFGSLPGRQTYILDKNGVVQLIYNNQFQPEKHIDETLKFLQ  213 (215)
Q Consensus       173 ~~g~~p~~~~~lid~~G~v~~~~~g~~~~~~~~~~il~~l~  213 (215)
                          +|  ++++ .++|+++..+.|..     .+++.+.|+
T Consensus        84 ----~P--t~~~-~~~G~~~~~~~G~~-----~~~l~~~l~  112 (114)
T 2oe3_A           84 ----MP--TFVL-GKDGQLIGKIIGAN-----PTALEKGIK  112 (114)
T ss_dssp             ----BS--EEEE-EETTEEEEEEESSC-----HHHHHHHHH
T ss_pred             ----cc--EEEE-EeCCeEEEEEeCCC-----HHHHHHHHH
Confidence                99  6554 58999999998853     344555554

>1sen_A Thioredoxin-like protein P19; endoplasmic reticulum, RP19, structural genomics, PSI, protein structure initiative; 1.20A {Homo sapiens} SCOP: c.47.1.1 PDB: 2k8v_A

Probab=99.38  E-value=5.2e-14  Score=106.30  Aligned_cols=95  Identities=17%  Similarity=0.235  Sum_probs=67.6

Q ss_pred             CeEEeCCCCCeeecCCcCCCcEEEEEEcCCCChhhHHHHHHHHHHHHHHHHcCcEEEEEeCCCHHHHHHHHHHcCCCeEE
Q 028030           76 SFTLKDQEGRNVSLSKFKGKPVVVYFYPADETPGCTKQACAFRDSYEKFKKAGAEVIGISGDDSSSHKAFAKKYRLPYTL  155 (215)
Q Consensus        76 ~f~l~~~~g~~~~l~~~~gk~~ll~f~~a~~C~~C~~~~~~l~~l~~~~~~~~v~vv~vs~d~~~~~~~~~~~~~~~~~~  155 (215)
                      ++...+.+ +.+.....+||++||+|| ++||++|+...|.|.++.+.++. ++.|+.|++|....              
T Consensus        29 ~i~w~~~~-~~~~~~~~~~k~vlv~F~-a~WC~~C~~~~p~l~~~~~~~~~-~~~~~~v~~d~~~~--------------   91 (164)
T 1sen_A           29 HIHWRTLE-DGKKEAAASGLPLMVIIH-KSWCGACKALKPKFAESTEISEL-SHNFVMVNLEDEEE--------------   91 (164)
T ss_dssp             TSCBCCHH-HHHHHHHHHTCCEEEEEE-CTTCHHHHHHHHHHHTCHHHHHH-HTTSEEEEEEGGGS--------------
T ss_pred             cccccCHH-HHHHHHHhcCCeEEEEEE-CCCCHHHHHHHHHHHHHHHHhhc-CCeEEEEEecCCch--------------
Confidence            44444444 445555567999999999 99999999999999998766554 47777777643321              


Q ss_pred             EEcCChhHHHHhCCCccCCCCCCccEEEEEcCCCcEEEEEeCC
Q 028030          156 LSDEGNKVRKEWGVPADFFGSLPGRQTYILDKNGVVQLIYNNQ  198 (215)
Q Consensus       156 ~~d~~~~~~~~~g~~~~~~g~~p~~~~~lid~~G~v~~~~~g~  198 (215)
                            .+...|++..   ..+|  +++++|++|+++..+.|.
T Consensus        92 ------~~~~~~~~~~---~~~P--t~~~~d~~G~~~~~~~G~  123 (164)
T 1sen_A           92 ------PKDEDFSPDG---GYIP--RILFLDPSGKVHPEIINE  123 (164)
T ss_dssp             ------CSCGGGCTTC---SCSS--EEEEECTTSCBCTTCCCT
T ss_pred             ------HHHHHhcccC---CcCC--eEEEECCCCCEEEEEeCC
Confidence                  1334555521   1278  999999999999877774

>2e0q_A Thioredoxin; electron transport; 1.49A {Sulfolobus tokodaii} PDB: 3hhv_A

Probab=99.38  E-value=3.1e-12  Score=87.84  Aligned_cols=76  Identities=18%  Similarity=0.254  Sum_probs=64.8

Q ss_pred             CCCcEEEEEEcCCCChhhHHHHHHHHHHHHHHHHcCcEEEEEeCCCHHHHHHHHHHcCCCeEEEEcCChhHHHHhCCCcc
Q 028030           93 KGKPVVVYFYPADETPGCTKQACAFRDSYEKFKKAGAEVIGISGDDSSSHKAFAKKYRLPYTLLSDEGNKVRKEWGVPAD  172 (215)
Q Consensus        93 ~gk~~ll~f~~a~~C~~C~~~~~~l~~l~~~~~~~~v~vv~vs~d~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~g~~~~  172 (215)
                      +||+++|.|| ++||++|+...+.+.++++++++  +.++.|+.|.                     +.++.+.|++.. 
T Consensus        15 ~~~~~~v~f~-~~~C~~C~~~~~~~~~~~~~~~~--~~~~~v~~~~---------------------~~~~~~~~~v~~-   69 (104)
T 2e0q_A           15 SHEIAVVDFW-AEWCAPCLILAPIIEELAEDYPQ--VGFGKLNSDE---------------------NPDIAARYGVMS-   69 (104)
T ss_dssp             HSSEEEEEEE-CTTCHHHHHHHHHHHHHHHHCTT--SEEEEEETTT---------------------CHHHHHHTTCCS-
T ss_pred             cCCcEEEEEE-CCCChhHHHHhHHHHHHHHHcCC--ceEEEEECCC---------------------CHHHHHhCCccc-
Confidence            5789999999 99999999999999999988874  8999998743                     456788899987 


Q ss_pred             CCCCCCccEEEEEcCCCcEEEEEeCCCC
Q 028030          173 FFGSLPGRQTYILDKNGVVQLIYNNQFQ  200 (215)
Q Consensus       173 ~~g~~p~~~~~lid~~G~v~~~~~g~~~  200 (215)
                          +|  +++++ ++|+++..+.|..+
T Consensus        70 ----~P--t~~~~-~~g~~~~~~~g~~~   90 (104)
T 2e0q_A           70 ----LP--TVIFF-KDGEPVDEIIGAVP   90 (104)
T ss_dssp             ----SC--EEEEE-ETTEEEEEEESCCC
T ss_pred             ----cC--EEEEE-ECCeEhhhccCCCC
Confidence                89  88877 89999998888543

>2yzu_A Thioredoxin; redox protein, electron transport, structural genomics; 1.90A {Thermus thermophilus} PDB: 2cvk_A

Probab=99.38  E-value=1.9e-12  Score=89.77  Aligned_cols=76  Identities=17%  Similarity=0.246  Sum_probs=65.3

Q ss_pred             CCCcEEEEEEcCCCChhhHHHHHHHHHHHHHHHHcCcEEEEEeCCCHHHHHHHHHHcCCCeEEEEcCChhHHHHhCCCcc
Q 028030           93 KGKPVVVYFYPADETPGCTKQACAFRDSYEKFKKAGAEVIGISGDDSSSHKAFAKKYRLPYTLLSDEGNKVRKEWGVPAD  172 (215)
Q Consensus        93 ~gk~~ll~f~~a~~C~~C~~~~~~l~~l~~~~~~~~v~vv~vs~d~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~g~~~~  172 (215)
                      .+|+++|.|| ++||++|+...+.+.++.+++++ ++.++.|+.|.                     +.++.+.|++.. 
T Consensus        17 ~~~~~lv~f~-~~~C~~C~~~~~~l~~~~~~~~~-~~~~~~v~~~~---------------------~~~~~~~~~v~~-   72 (109)
T 2yzu_A           17 QHPLVLVDFW-AEWCAPCRMIAPILEEIAKEYEG-KLLVAKLDVDE---------------------NPKTAMRYRVMS-   72 (109)
T ss_dssp             HCSEEEEEEE-CTTCHHHHHHHHHHHHHHHHTBT-TBEEEEEETTT---------------------CHHHHHHTTCCS-
T ss_pred             CCCeEEEEEE-CCCCHHHHHhhHHHHHHHHHhhC-ceEEEEEECCC---------------------CHhHHHhCCCCc-
Confidence            4789999999 99999999999999999998875 49999998754                     346788899987 


Q ss_pred             CCCCCCccEEEEEcCCCcEEEEEeCCC
Q 028030          173 FFGSLPGRQTYILDKNGVVQLIYNNQF  199 (215)
Q Consensus       173 ~~g~~p~~~~~lid~~G~v~~~~~g~~  199 (215)
                          +|  +++++ ++|+++..+.|..
T Consensus        73 ----~P--t~~~~-~~g~~~~~~~g~~   92 (109)
T 2yzu_A           73 ----IP--TVILF-KDGQPVEVLVGAQ   92 (109)
T ss_dssp             ----SS--EEEEE-ETTEEEEEEESCC
T ss_pred             ----CC--EEEEE-eCCcEeeeEeCCC
Confidence                89  88888 8999999888854

>2dj1_A Protein disulfide-isomerase A4; protein ERP-72, ERP72, CAI, structural genomics, NPPSFA; NMR {Mus musculus}

Probab=99.38  E-value=1e-12  Score=95.83  Aligned_cols=90  Identities=19%  Similarity=0.227  Sum_probs=68.0

Q ss_pred             eCCCCCeeecCCcCCCcEEEEEEcCCCChhhHHHHHHHHHHHHHHHHcC--cEEEEEeCCCHHHHHHHHHHcCCCeEEEE
Q 028030           80 KDQEGRNVSLSKFKGKPVVVYFYPADETPGCTKQACAFRDSYEKFKKAG--AEVIGISGDDSSSHKAFAKKYRLPYTLLS  157 (215)
Q Consensus        80 ~~~~g~~~~l~~~~gk~~ll~f~~a~~C~~C~~~~~~l~~l~~~~~~~~--v~vv~vs~d~~~~~~~~~~~~~~~~~~~~  157 (215)
                      .+++++.+...-..+|++||+|| ++||++|+...+.|.++++++++++  +.++.|..+                    
T Consensus        20 ~~l~~~~~~~~~~~~~~vlv~f~-a~wC~~C~~~~p~~~~~~~~~~~~~~~v~~~~vd~~--------------------   78 (140)
T 2dj1_A           20 WVLNDGNFDNFVADKDTVLLEFY-APWCGHCKQFAPEYEKIASTLKDNDPPIAVAKIDAT--------------------   78 (140)
T ss_dssp             EECCTTTHHHHHTTCSEEEEEEC-CTTCHHHHTTHHHHHHHHHHHHSSSSCCEEEEECTT--------------------
T ss_pred             EEcChHhHHHHHhcCCeEEEEEE-CCCCHHHHHhhHHHHHHHHHHhccCCceEEEEEeCc--------------------
Confidence            34455444322125799999999 9999999999999999999998763  777777654                    


Q ss_pred             cCChhHHHHhCCCccCCCCCCccEEEEEcCCCcEEEEEeCCCC
Q 028030          158 DEGNKVRKEWGVPADFFGSLPGRQTYILDKNGVVQLIYNNQFQ  200 (215)
Q Consensus       158 d~~~~~~~~~g~~~~~~g~~p~~~~~lid~~G~v~~~~~g~~~  200 (215)
                       .+..+.+.|++..     +|  +++++ ++|+ +..+.|..+
T Consensus        79 -~~~~~~~~~~v~~-----~P--t~~~~-~~G~-~~~~~g~~~  111 (140)
T 2dj1_A           79 -SASMLASKFDVSG-----YP--TIKIL-KKGQ-AVDYDGSRT  111 (140)
T ss_dssp             -TCHHHHHHTTCCS-----SS--EEEEE-ETTE-EEECCSCCC
T ss_pred             -ccHHHHHHCCCCc-----cC--eEEEE-ECCc-EEEcCCCCC
Confidence             3457888999987     89  88888 7898 556666443

>1r26_A Thioredoxin; redox-active disulfide, electron transport; 1.40A {Trypanosoma} SCOP: c.47.1.1

Probab=99.38  E-value=3.1e-12  Score=92.12  Aligned_cols=73  Identities=15%  Similarity=0.164  Sum_probs=62.9

Q ss_pred             CCCcEEEEEEcCCCChhhHHHHHHHHHHHHHHHHcCcEEEEEeCCCHHHHHHHHHHcCCCeEEEEcCChhHHHHhCCCcc
Q 028030           93 KGKPVVVYFYPADETPGCTKQACAFRDSYEKFKKAGAEVIGISGDDSSSHKAFAKKYRLPYTLLSDEGNKVRKEWGVPAD  172 (215)
Q Consensus        93 ~gk~~ll~f~~a~~C~~C~~~~~~l~~l~~~~~~~~v~vv~vs~d~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~g~~~~  172 (215)
                      .+|++||+|| ++||++|+...|.|.+++++++  ++.++.|+.|.                     +.++.+.|++.. 
T Consensus        36 ~~k~vvv~F~-a~wC~~C~~~~p~l~~l~~~~~--~v~~~~vd~d~---------------------~~~l~~~~~v~~-   90 (125)
T 1r26_A           36 EDILTVAWFT-AVWCGPCKTIERPMEKIAYEFP--TVKFAKVDADN---------------------NSEIVSKCRVLQ-   90 (125)
T ss_dssp             SSSCEEEEEE-CTTCHHHHHTHHHHHHHHHHCT--TSEEEEEETTT---------------------CHHHHHHTTCCS-
T ss_pred             cCCEEEEEEE-CCcCHhHHHHHHHHHHHHHHCC--CCEEEEEECCC---------------------CHHHHHHcCCCc-
Confidence            6899999999 9999999999999999999884  59999998753                     456888999987 


Q ss_pred             CCCCCCccEEEEEcCCCcEEEEEeC
Q 028030          173 FFGSLPGRQTYILDKNGVVQLIYNN  197 (215)
Q Consensus       173 ~~g~~p~~~~~lid~~G~v~~~~~g  197 (215)
                          +|  +++++ ++|+++..+.|
T Consensus        91 ----~P--t~~i~-~~G~~~~~~~G  108 (125)
T 1r26_A           91 ----LP--TFIIA-RSGKMLGHVIG  108 (125)
T ss_dssp             ----SS--EEEEE-ETTEEEEEEES
T ss_pred             ----cc--EEEEE-eCCeEEEEEeC
Confidence                99  65554 89999999888

>1gh2_A Thioredoxin-like protein; redox-active center, electron transport; 2.22A {Homo sapiens} SCOP: c.47.1.1

Probab=99.38  E-value=4.5e-12  Score=88.18  Aligned_cols=74  Identities=19%  Similarity=0.204  Sum_probs=63.2

Q ss_pred             CCCcEEEEEEcCCCChhhHHHHHHHHHHHHHHHHcCcEEEEEeCCCHHHHHHHHHHcCCCeEEEEcCChhHHHHhCCCcc
Q 028030           93 KGKPVVVYFYPADETPGCTKQACAFRDSYEKFKKAGAEVIGISGDDSSSHKAFAKKYRLPYTLLSDEGNKVRKEWGVPAD  172 (215)
Q Consensus        93 ~gk~~ll~f~~a~~C~~C~~~~~~l~~l~~~~~~~~v~vv~vs~d~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~g~~~~  172 (215)
                      ++|++||+|| ++||++|+...|.+.+++++++  ++.++.|+.|.                     +.++.+.|++.. 
T Consensus        20 ~~~~v~v~f~-a~wC~~C~~~~~~~~~~~~~~~--~~~~~~vd~~~---------------------~~~~~~~~~v~~-   74 (107)
T 1gh2_A           20 GSRLAVVKFT-MRGCGPCLRIAPAFSSMSNKYP--QAVFLEVDVHQ---------------------CQGTAATNNISA-   74 (107)
T ss_dssp             TTSCEEEEEE-CSSCHHHHHHHHHHHHHHHHCT--TSEEEEEETTT---------------------SHHHHHHTTCCS-
T ss_pred             CCCEEEEEEE-CCCChhhHHHHHHHHHHHHHCC--CcEEEEEECcc---------------------CHHHHHhcCCCc-
Confidence            5799999999 9999999999999999999884  59999998753                     346778899987 


Q ss_pred             CCCCCCccEEEEEcCCCcEEEEEeCC
Q 028030          173 FFGSLPGRQTYILDKNGVVQLIYNNQ  198 (215)
Q Consensus       173 ~~g~~p~~~~~lid~~G~v~~~~~g~  198 (215)
                          +|  +++++ ++|+++..+.|.
T Consensus        75 ----~P--t~~~~-~~G~~~~~~~G~   93 (107)
T 1gh2_A           75 ----TP--TFQFF-RNKVRIDQYQGA   93 (107)
T ss_dssp             ----SS--EEEEE-ETTEEEEEEESS
T ss_pred             ----cc--EEEEE-ECCeEEEEEeCC
Confidence                99  77766 799999988883

>1fb6_A Thioredoxin M; electron transport; 2.10A {Spinacia oleracea} SCOP: c.47.1.1 PDB: 1fb0_A 1gl8_A 2puk_C

Probab=99.38  E-value=1.6e-12  Score=89.79  Aligned_cols=76  Identities=17%  Similarity=0.291  Sum_probs=63.6

Q ss_pred             CCCcEEEEEEcCCCChhhHHHHHHHHHHHHHHHHcCcEEEEEeCCCHHHHHHHHHHcCCCeEEEEcCChhHHHHhCCCcc
Q 028030           93 KGKPVVVYFYPADETPGCTKQACAFRDSYEKFKKAGAEVIGISGDDSSSHKAFAKKYRLPYTLLSDEGNKVRKEWGVPAD  172 (215)
Q Consensus        93 ~gk~~ll~f~~a~~C~~C~~~~~~l~~l~~~~~~~~v~vv~vs~d~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~g~~~~  172 (215)
                      .+|+++|.|| ++||++|+...+.+.+++++++++ +.++.|+.|+                     +.++.+.|++.. 
T Consensus        17 ~~~~~~v~f~-~~~C~~C~~~~~~~~~~~~~~~~~-~~~~~v~~~~---------------------~~~~~~~~~v~~-   72 (105)
T 1fb6_A           17 SEVPVMVDFW-APWCGPCKLIAPVIDELAKEYSGK-IAVYKLNTDE---------------------APGIATQYNIRS-   72 (105)
T ss_dssp             CSSCEEEEEE-CTTCHHHHHHHHHHHHHHHHTTTT-CEEEEEETTT---------------------CHHHHHHTTCCS-
T ss_pred             CCCcEEEEEE-CCCChHHHHHHHHHHHHHHHhcCc-eEEEEEcCcc---------------------hHHHHHhCCCCc-
Confidence            4789999999 999999999999999999988764 8888888653                     346788899987 


Q ss_pred             CCCCCCccEEEEEcCCCcEEEEEeCCC
Q 028030          173 FFGSLPGRQTYILDKNGVVQLIYNNQF  199 (215)
Q Consensus       173 ~~g~~p~~~~~lid~~G~v~~~~~g~~  199 (215)
                          +|  +++++ ++|+++..+.|..
T Consensus        73 ----~P--t~~~~-~~g~~~~~~~G~~   92 (105)
T 1fb6_A           73 ----IP--TVLFF-KNGERKESIIGAV   92 (105)
T ss_dssp             ----SS--EEEEE-ETTEEEEEEEECC
T ss_pred             ----cc--EEEEE-eCCeEEEEEecCC
Confidence                89  65555 7999999888854

>3m9j_A Thioredoxin; oxidoreductase; 1.10A {Homo sapiens} SCOP: c.47.1.1 PDB: 3m9k_A 2hsh_A 1erv_A 2ifq_A 2ifq_B 1auc_A 1eru_A 1ert_A 3kd0_A 1aiu_A 3trx_A 4trx_A 1trs_A 1tru_A 1trv_A 1trw_A 3e3e_A* 1cqg_A 1cqh_A 1mdi_A ...

Probab=99.38  E-value=4.7e-12  Score=87.44  Aligned_cols=75  Identities=23%  Similarity=0.227  Sum_probs=64.5

Q ss_pred             cCCCcEEEEEEcCCCChhhHHHHHHHHHHHHHHHHcCcEEEEEeCCCHHHHHHHHHHcCCCeEEEEcCChhHHHHhCCCc
Q 028030           92 FKGKPVVVYFYPADETPGCTKQACAFRDSYEKFKKAGAEVIGISGDDSSSHKAFAKKYRLPYTLLSDEGNKVRKEWGVPA  171 (215)
Q Consensus        92 ~~gk~~ll~f~~a~~C~~C~~~~~~l~~l~~~~~~~~v~vv~vs~d~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~g~~~  171 (215)
                      .+||+++|.|| ++||++|+...+.+.+++++++  ++.++.|+.|                     ...++.+.|++..
T Consensus        18 ~~~~~~~v~f~-~~~C~~C~~~~~~~~~~~~~~~--~~~~~~vd~~---------------------~~~~~~~~~~v~~   73 (105)
T 3m9j_A           18 AGDKLVVVDFS-ATWCGPCKMIKPFFHSLSEKYS--NVIFLEVDVD---------------------DCQDVASESEVKS   73 (105)
T ss_dssp             TTTSCEEEEEE-CTTCHHHHHHHHHHHHHHHHST--TSEEEEEETT---------------------TCHHHHHHTTCCB
T ss_pred             cCCCeEEEEEE-CCCChhhHHHHHHHHHHHHHcc--CeEEEEEEhh---------------------hhHHHHHHcCCCc
Confidence            36899999999 9999999999999999999886  4899999864                     3456788899987


Q ss_pred             cCCCCCCccEEEEEcCCCcEEEEEeCC
Q 028030          172 DFFGSLPGRQTYILDKNGVVQLIYNNQ  198 (215)
Q Consensus       172 ~~~g~~p~~~~~lid~~G~v~~~~~g~  198 (215)
                           +|  +++++ ++|+++..+.|.
T Consensus        74 -----~P--t~~~~-~~g~~~~~~~g~   92 (105)
T 3m9j_A           74 -----MP--TFQFF-KKGQKVGEFSGA   92 (105)
T ss_dssp             -----SS--EEEEE-ETTEEEEEEESS
T ss_pred             -----Cc--EEEEE-ECCeEEEEEeCC
Confidence                 89  88888 799999998885

>1x5e_A Thioredoxin domain containing protein 1; TMX, TXNDC1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.38  E-value=1.5e-12  Score=93.36  Aligned_cols=72  Identities=18%  Similarity=0.262  Sum_probs=60.9

Q ss_pred             cEEEEEEcCCCChhhHHHHHHHHHHHHHHHHcCcEEEEEeCCCHHHHHHHHHHcCCCeEEEEcCChhHHHHhCCCccCCC
Q 028030           96 PVVVYFYPADETPGCTKQACAFRDSYEKFKKAGAEVIGISGDDSSSHKAFAKKYRLPYTLLSDEGNKVRKEWGVPADFFG  175 (215)
Q Consensus        96 ~~ll~f~~a~~C~~C~~~~~~l~~l~~~~~~~~v~vv~vs~d~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~g~~~~~~g  175 (215)
                      .+||+|| ++||++|+...|.+.++++++++.++.++.|..|.                     +..+.+.|++..    
T Consensus        24 ~vlv~f~-a~wC~~C~~~~p~~~~~~~~~~~~~v~~~~vd~~~---------------------~~~~~~~~~v~~----   77 (126)
T 1x5e_A           24 DWMIEFY-APWCPACQNLQPEWESFAEWGEDLEVNIAKVDVTE---------------------QPGLSGRFIINA----   77 (126)
T ss_dssp             EEEEEEE-CSSCHHHHHHHHHHHHHHHHHGGGTCEEEEEETTT---------------------CHHHHHHTTCCS----
T ss_pred             CEEEEEE-CCCCHHHHHHhHHHHHHHHHhccCCeEEEEEECcC---------------------CHHHHHHcCCcc----
Confidence            4899999 99999999999999999999987679999998653                     345888899987    


Q ss_pred             CCCccEEEEEcCCCcEEEEEeCC
Q 028030          176 SLPGRQTYILDKNGVVQLIYNNQ  198 (215)
Q Consensus       176 ~~p~~~~~lid~~G~v~~~~~g~  198 (215)
                       +|  +++++ ++|++ ..+.|.
T Consensus        78 -~P--t~~~~-~~G~~-~~~~G~   95 (126)
T 1x5e_A           78 -LP--TIYHC-KDGEF-RRYQGP   95 (126)
T ss_dssp             -SS--EEEEE-ETTEE-EECCSC
T ss_pred             -cC--EEEEE-eCCeE-EEeecC
Confidence             89  88888 89996 566664

>2lst_A Thioredoxin; structural genomics, NEW YORK structural genomics research consortium, oxidoreductase; NMR {Thermus thermophilus}

Probab=99.08  E-value=4e-14  Score=102.20  Aligned_cols=92  Identities=20%  Similarity=0.285  Sum_probs=72.8

Q ss_pred             CCeeecCCcCCCcEEEEEEcCCCChhhHHHHHHH---HHHHHHHHHcCcEEEEEeCCCHHHHHHHHHHcCCCeEEEEcCC
Q 028030           84 GRNVSLSKFKGKPVVVYFYPADETPGCTKQACAF---RDSYEKFKKAGAEVIGISGDDSSSHKAFAKKYRLPYTLLSDEG  160 (215)
Q Consensus        84 g~~~~l~~~~gk~~ll~f~~a~~C~~C~~~~~~l---~~l~~~~~~~~v~vv~vs~d~~~~~~~~~~~~~~~~~~~~d~~  160 (215)
                      .+.+.+....||++||+|| ++||++|+...|.+   .++.+.+++ ++.++.|+.|+.                   ..
T Consensus         9 ~~~~~~~~~~~k~vlv~f~-a~wC~~C~~~~~~~~~~~~~~~~~~~-~~~~~~vd~~~~-------------------~~   67 (130)
T 2lst_A            9 PEALALAQAHGRMVMVYFH-SEHCPYCQQMNTFVLSDPGVSRLLEA-RFVVASVSVDTP-------------------EG   67 (130)
Confidence            5566777778999999999 99999999999999   888877765 488888877542                   23


Q ss_pred             hhHHHHhCCCccCCCCCCccEEEEEcC-CCcE--EEEEeCCCCCCc
Q 028030          161 NKVRKEWGVPADFFGSLPGRQTYILDK-NGVV--QLIYNNQFQPEK  203 (215)
Q Consensus       161 ~~~~~~~g~~~~~~g~~p~~~~~lid~-~G~v--~~~~~g~~~~~~  203 (215)
                      ..+.+.|++..     +|  +++++|+ +|++  +..+.|....+.
T Consensus        68 ~~~~~~~~v~~-----~P--t~~~~d~~~G~~~~~~~~~G~~~~~~  106 (130)
T 2lst_A           68 QELARRYRVPG-----TP--TFVFLVPKAGAWEEVGRLFGSRPRAE  106 (130)
Confidence            56788899987     89  9999995 6999  778877544433

>2f51_A Thioredoxin; electron transport; 1.90A {Trichomonas vaginalis}

Probab=99.37  E-value=4.1e-12  Score=90.41  Aligned_cols=99  Identities=15%  Similarity=0.203  Sum_probs=75.7

Q ss_pred             eCCCCCeeecC-Cc--CCCcEEEEEEcCCCChhhHHHHHHHHHHHHHHHHcCcEEEEEeCCCHHHHHHHHHHcCCCeEEE
Q 028030           80 KDQEGRNVSLS-KF--KGKPVVVYFYPADETPGCTKQACAFRDSYEKFKKAGAEVIGISGDDSSSHKAFAKKYRLPYTLL  156 (215)
Q Consensus        80 ~~~~g~~~~l~-~~--~gk~~ll~f~~a~~C~~C~~~~~~l~~l~~~~~~~~v~vv~vs~d~~~~~~~~~~~~~~~~~~~  156 (215)
                      .+.+|...++. .+  .||++||+|| ++||++|+...+.|.++++++  .++.++.|+.|.                  
T Consensus         6 ~~~~g~~~~~~~~~~~~~~~vlv~f~-a~wC~~C~~~~~~l~~l~~~~--~~v~~~~vd~~~------------------   64 (118)
T 2f51_A            6 VHFNGTHEALLNRIKEAPGLVLVDFF-ATWCGPCQRLGQILPSIAEAN--KDVTFIKVDVDK------------------   64 (118)
T ss_dssp             EEECSCHHHHHHHHHHCSSCEEEEEE-CTTCHHHHHHHHHHHHHHHHC--TTSEEEEEETTT------------------
T ss_pred             eEecCCHHHHHHHHHhCCCEEEEEEE-CCCCHHHHHHHHHHHHHHHHC--CCeEEEEEECCC------------------
Confidence            34455555554 23  4899999999 999999999999999999988  469999998753                  


Q ss_pred             EcCChhHHHHhCCCccCCCCCCccEEEEEcC---CCcEEEEEeCCCCCCccHHHHHHH
Q 028030          157 SDEGNKVRKEWGVPADFFGSLPGRQTYILDK---NGVVQLIYNNQFQPEKHIDETLKF  211 (215)
Q Consensus       157 ~d~~~~~~~~~g~~~~~~g~~p~~~~~lid~---~G~v~~~~~g~~~~~~~~~~il~~  211 (215)
                         +.++.+.|++..     +|  ++++++.   +|+++..+.|..  .+.++++++.
T Consensus        65 ---~~~~~~~~~i~~-----~P--t~~~~~~~~~~G~~~~~~~G~~--~~~l~~~~~~  110 (118)
T 2f51_A           65 ---NGNAADAYGVSS-----IP--ALFFVKKEGNEIKTLDQFVGAD--VSRIKADIEK  110 (118)
T ss_dssp             ---CHHHHHHTTCCS-----SS--EEEEEEEETTEEEEEEEEESCC--HHHHHHHHHH
T ss_pred             ---CHHHHHhcCCCC-----CC--EEEEEeCCCCcceEEEeecCCC--HHHHHHHHHH
Confidence               346788899987     89  8888875   499999999853  2335555443

>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*

Probab=99.36  E-value=1.1e-12  Score=107.07  Aligned_cols=78  Identities=15%  Similarity=0.354  Sum_probs=67.0

Q ss_pred             cCCCcEEEEEEcCCCChhhHHHHHHHHHHHHHHHHcCcEEEEEeCCCHHHHHHHHHHcCCCeEEEEcCChhHHHHhCCCc
Q 028030           92 FKGKPVVVYFYPADETPGCTKQACAFRDSYEKFKKAGAEVIGISGDDSSSHKAFAKKYRLPYTLLSDEGNKVRKEWGVPA  171 (215)
Q Consensus        92 ~~gk~~ll~f~~a~~C~~C~~~~~~l~~l~~~~~~~~v~vv~vs~d~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~g~~~  171 (215)
                      -+||++||+|| ++||++|+...|.+.++++++++ .+.|+.|++|.                     +.++...|++..
T Consensus        24 ~~~~~v~v~f~-a~wC~~C~~~~p~~~~~~~~~~~-~~~~~~vd~~~---------------------~~~~~~~~~v~~   80 (287)
T 3qou_A           24 SMTTPVLFYFW-SERSQHCLQLTPILESLAAQYNG-QFILAKLDCDA---------------------EQMIAAQFGLRA   80 (287)
T ss_dssp             TTTSCEEEEEE-CTTCTTTTTTHHHHHHHHHHHTS-SSEEEEEETTT---------------------CHHHHHTTTCCS
T ss_pred             cCCCeEEEEEE-CCCChHHHHHHHHHHHHHHHcCC-CeEEEEEeCcc---------------------CHHHHHHcCCCC
Confidence            35899999999 99999999999999999999986 39999998753                     347888999987


Q ss_pred             cCCCCCCccEEEEEcCCCcEEEEEeCCCC
Q 028030          172 DFFGSLPGRQTYILDKNGVVQLIYNNQFQ  200 (215)
Q Consensus       172 ~~~g~~p~~~~~lid~~G~v~~~~~g~~~  200 (215)
                           +|  +++++ ++|+++..+.|..+
T Consensus        81 -----~P--t~~~~-~~G~~~~~~~g~~~  101 (287)
T 3qou_A           81 -----IP--TVYLF-QNGQPVDGFQGPQP  101 (287)
T ss_dssp             -----SS--EEEEE-ETTEEEEEEESCCC
T ss_pred             -----CC--eEEEE-ECCEEEEEeeCCCC
Confidence                 99  88888 79999999988543

>1syr_A Thioredoxin; SGPP, structural genomics, PSI, protein structure initiative structural genomics of pathogenic protozoa consortium; 2.95A {Plasmodium falciparum} SCOP: c.47.1.1

Probab=99.36  E-value=4.1e-12  Score=89.22  Aligned_cols=74  Identities=18%  Similarity=0.267  Sum_probs=62.4

Q ss_pred             CCCcEEEEEEcCCCChhhHHHHHHHHHHHHHHHHcCcEEEEEeCCCHHHHHHHHHHcCCCeEEEEcCChhHHHHhCCCcc
Q 028030           93 KGKPVVVYFYPADETPGCTKQACAFRDSYEKFKKAGAEVIGISGDDSSSHKAFAKKYRLPYTLLSDEGNKVRKEWGVPAD  172 (215)
Q Consensus        93 ~gk~~ll~f~~a~~C~~C~~~~~~l~~l~~~~~~~~v~vv~vs~d~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~g~~~~  172 (215)
                      .||++||+|| ++||++|+...+.+.+++++++  ++.++.|+.|.                     +..+.+.|++.. 
T Consensus        25 ~~k~vlv~f~-a~~C~~C~~~~~~l~~l~~~~~--~v~~~~vd~~~---------------------~~~~~~~~~v~~-   79 (112)
T 1syr_A           25 QNELVIVDFF-AEWCGPCKRIAPFYEECSKTYT--KMVFIKVDVDE---------------------VSEVTEKENITS-   79 (112)
T ss_dssp             HCSEEEEEEE-CTTCHHHHHHHHHHHHHHHHCT--TSEEEEEETTT---------------------THHHHHHTTCCS-
T ss_pred             cCCeEEEEEE-CCCCHHHHHHHHHHHHHHHHcC--CCEEEEEECCC---------------------CHHHHHHcCCCc-
Confidence            5799999999 9999999999999999998876  59999998754                     336778899987 


Q ss_pred             CCCCCCccEEEEEcCCCcEEEEEeCC
Q 028030          173 FFGSLPGRQTYILDKNGVVQLIYNNQ  198 (215)
Q Consensus       173 ~~g~~p~~~~~lid~~G~v~~~~~g~  198 (215)
                          +|  +++ +.++|+++..+.|.
T Consensus        80 ----~P--t~~-~~~~G~~~~~~~G~   98 (112)
T 1syr_A           80 ----MP--TFK-VYKNGSSVDTLLGA   98 (112)
T ss_dssp             ----SS--EEE-EEETTEEEEEEESC
T ss_pred             ----cc--EEE-EEECCcEEEEEeCC
Confidence                99  654 44799999988884

>1qgv_A Spliceosomal protein U5-15KD; snRNP, thioredoxin, transcription; 1.40A {Homo sapiens} SCOP: c.47.1.8 PDB: 1syx_A 1pqn_A

Probab=99.36  E-value=3.1e-12  Score=94.26  Aligned_cols=73  Identities=18%  Similarity=0.102  Sum_probs=60.5

Q ss_pred             CCCcEEEEEEcCCCChhhHHHHHHHHHHHHHHHHcCcEEEEEeCCCHHHHHHHHHHcCCCeEEEEcCChhHHHHhCCCcc
Q 028030           93 KGKPVVVYFYPADETPGCTKQACAFRDSYEKFKKAGAEVIGISGDDSSSHKAFAKKYRLPYTLLSDEGNKVRKEWGVPAD  172 (215)
Q Consensus        93 ~gk~~ll~f~~a~~C~~C~~~~~~l~~l~~~~~~~~v~vv~vs~d~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~g~~~~  172 (215)
                      .||++||+|| ++||++|+...|.|.++++++++ ++.++.|+.|.                     +.++...|++.. 
T Consensus        22 ~~k~vlv~F~-a~wC~~C~~~~p~l~~l~~~~~~-~v~~~~vd~d~---------------------~~~~~~~~~i~~-   77 (142)
T 1qgv_A           22 EDRVVVIRFG-HDWDPTCMKMDEVLYSIAEKVKN-FAVIYLVDITE---------------------VPDFNKMYELYD-   77 (142)
T ss_dssp             SSSEEEEEEE-CTTSHHHHHHHHHHHHHHHHHTT-TEEEEEEETTT---------------------CCTTTTSSCSCS-
T ss_pred             CCCEEEEEEE-CCCCHHHHHHHHHHHHHHHHhCC-CeEEEEEcccc---------------------CHHHHHHcCCCC-
Confidence            4799999999 99999999999999999999975 48999998753                     345778899987 


Q ss_pred             CCCCCCccEEEEEcCCCcEEEEEe
Q 028030          173 FFGSLPGRQTYILDKNGVVQLIYN  196 (215)
Q Consensus       173 ~~g~~p~~~~~lid~~G~v~~~~~  196 (215)
                          +|  +++++ ++|+++....
T Consensus        78 ----~P--t~~~~-~~G~~v~~~~   94 (142)
T 1qgv_A           78 ----PC--TVMFF-FRNKHIMIDL   94 (142)
T ss_dssp             ----SC--EEEEE-ETTEEEEEEC
T ss_pred             ----CC--EEEEE-ECCcEEEEec
Confidence                99  78777 5888886533

>1ti3_A Thioredoxin H, PTTRXH1; oxidoreductase; NMR {Populus tremula} SCOP: c.47.1.1

Probab=99.36  E-value=6.5e-12  Score=87.89  Aligned_cols=84  Identities=25%  Similarity=0.346  Sum_probs=67.0

Q ss_pred             CCCcEEEEEEcCCCChhhHHHHHHHHHHHHHHHHcCcEEEEEeCCCHHHHHHHHHHcCCCeEEEEcCChhHHHHhCCCcc
Q 028030           93 KGKPVVVYFYPADETPGCTKQACAFRDSYEKFKKAGAEVIGISGDDSSSHKAFAKKYRLPYTLLSDEGNKVRKEWGVPAD  172 (215)
Q Consensus        93 ~gk~~ll~f~~a~~C~~C~~~~~~l~~l~~~~~~~~v~vv~vs~d~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~g~~~~  172 (215)
                      .||++||.|| ++||++|+...+.+.++.++++  ++.++.|+.|.                     ...+.+.|++.. 
T Consensus        25 ~~~~~vv~f~-~~~C~~C~~~~~~l~~~~~~~~--~v~~~~v~~~~---------------------~~~~~~~~~v~~-   79 (113)
T 1ti3_A           25 SQKLIVVDFT-ASWCPPCKMIAPIFAELAKKFP--NVTFLKVDVDE---------------------LKAVAEEWNVEA-   79 (113)
T ss_dssp             SSSEEEEEEE-CSSCHHHHHHHHHHHHHHHHCS--SEEEEEEETTT---------------------CHHHHHHHHCSS-
T ss_pred             cCCeEEEEEE-CCCCHHHHHHHHHHHHHHHhCC--CcEEEEEEccc---------------------cHHHHHhCCCCc-
Confidence            5899999999 9999999999999999998886  68999998743                     456778889887 


Q ss_pred             CCCCCCccEEEEEcCCCcEEEEEeCCCCCCccHHHHHH
Q 028030          173 FFGSLPGRQTYILDKNGVVQLIYNNQFQPEKHIDETLK  210 (215)
Q Consensus       173 ~~g~~p~~~~~lid~~G~v~~~~~g~~~~~~~~~~il~  210 (215)
                          +|  +++++ ++|+++..+.| .+.+ .+.+.++
T Consensus        80 ----~P--t~~~~-~~G~~~~~~~g-~~~~-~l~~~l~  108 (113)
T 1ti3_A           80 ----MP--TFIFL-KDGKLVDKTVG-ADKD-GLPTLVA  108 (113)
T ss_dssp             ----TT--EEEEE-ETTEEEEEEEC-CCTT-HHHHHHH
T ss_pred             ----cc--EEEEE-eCCEEEEEEec-CCHH-HHHHHHH
Confidence                89  66666 79999999888 3433 3444443

>2vm1_A Thioredoxin, thioredoxin H isoform 1.; oxidoreductase, protein disulfide reductase, thioredoxin-FOL; 1.7A {Hordeum vulgare var} PDB: 2vm2_A

Probab=99.35  E-value=5.9e-12  Score=88.79  Aligned_cols=73  Identities=27%  Similarity=0.343  Sum_probs=62.6

Q ss_pred             CCCcEEEEEEcCCCChhhHHHHHHHHHHHHHHHHcCcEEEEEeCCCHHHHHHHHHHcCCCeEEEEcCChhHHHHhCCCcc
Q 028030           93 KGKPVVVYFYPADETPGCTKQACAFRDSYEKFKKAGAEVIGISGDDSSSHKAFAKKYRLPYTLLSDEGNKVRKEWGVPAD  172 (215)
Q Consensus        93 ~gk~~ll~f~~a~~C~~C~~~~~~l~~l~~~~~~~~v~vv~vs~d~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~g~~~~  172 (215)
                      .||++||+|| ++||++|+...+.+.++.++++  ++.++.|+.|                     ....+.+.|++.. 
T Consensus        27 ~~~~~vv~f~-~~~C~~C~~~~~~l~~~~~~~~--~~~~~~v~~~---------------------~~~~~~~~~~v~~-   81 (118)
T 2vm1_A           27 TGKLVIIDFT-ASWCGPCRVIAPVFAEYAKKFP--GAIFLKVDVD---------------------ELKDVAEAYNVEA-   81 (118)
T ss_dssp             HTCCEEEEEE-CTTCHHHHHHHHHHHHHHHHCT--TSEEEEEETT---------------------TSHHHHHHTTCCS-
T ss_pred             CCCEEEEEEE-CCCCHhHHHHhHHHHHHHHHCC--CcEEEEEEcc---------------------cCHHHHHHcCCCc-
Confidence            3899999999 9999999999999999998886  6999999874                     3456788899987 


Q ss_pred             CCCCCCccEEEEEcCCCcEEEEEeC
Q 028030          173 FFGSLPGRQTYILDKNGVVQLIYNN  197 (215)
Q Consensus       173 ~~g~~p~~~~~lid~~G~v~~~~~g  197 (215)
                          +|  +++++ ++|+++..+.|
T Consensus        82 ----~P--t~~~~-~~g~~~~~~~g   99 (118)
T 2vm1_A           82 ----MP--TFLFI-KDGEKVDSVVG   99 (118)
T ss_dssp             ----BS--EEEEE-ETTEEEEEEES
T ss_pred             ----Cc--EEEEE-eCCeEEEEecC
Confidence                89  66666 79999998888

>3apq_A DNAJ homolog subfamily C member 10; thioredoxin fold, DNAJ domain, endoplasmic reticulum, oxidor; 1.84A {Mus musculus}

Probab=99.35  E-value=5.6e-13  Score=104.34  Aligned_cols=94  Identities=18%  Similarity=0.289  Sum_probs=72.9

Q ss_pred             CeEEeCCCCCeeecCCcCCCcEEEEEEcCCCChhhHHHHHHHHHHHHHHHHcCcEEEEEeCCCHHHHHHHHHHcCCCeEE
Q 028030           76 SFTLKDQEGRNVSLSKFKGKPVVVYFYPADETPGCTKQACAFRDSYEKFKKAGAEVIGISGDDSSSHKAFAKKYRLPYTL  155 (215)
Q Consensus        76 ~f~l~~~~g~~~~l~~~~gk~~ll~f~~a~~C~~C~~~~~~l~~l~~~~~~~~v~vv~vs~d~~~~~~~~~~~~~~~~~~  155 (215)
                      +..+.+++++.+......|+++||+|| ++||++|+...|.+.++++++++ .+.++.|+.|.                 
T Consensus        96 ~~~v~~l~~~~f~~~~~~~~~vlv~F~-a~wC~~C~~~~p~~~~l~~~~~~-~v~~~~vd~~~-----------------  156 (210)
T 3apq_A           96 DPEIITLERREFDAAVNSGELWFVNFY-SPGCSHCHDLAPTWREFAKEVDG-LLRIGAVNCGD-----------------  156 (210)
T ss_dssp             CTTSEECCHHHHHHHHHHSCCEEEEEE-CTTCHHHHHHHHHHHHHHHHTBT-TBEEEEEETTT-----------------
T ss_pred             CCceEEecHHHHHHHHccCCcEEEEEe-CCCChhHHHHHHHHHHHHHHhcC-ceEEEEEECCc-----------------
Confidence            334445555444333246899999999 99999999999999999999875 48999988643                 


Q ss_pred             EEcCChhHHHHhCCCccCCCCCCccEEEEEcCCCcEEEEEeCCCC
Q 028030          156 LSDEGNKVRKEWGVPADFFGSLPGRQTYILDKNGVVQLIYNNQFQ  200 (215)
Q Consensus       156 ~~d~~~~~~~~~g~~~~~~g~~p~~~~~lid~~G~v~~~~~g~~~  200 (215)
                          +..+...|++..     +|  +++++ ++|+++..+.|..+
T Consensus       157 ----~~~l~~~~~v~~-----~P--t~~~~-~~G~~~~~~~G~~~  189 (210)
T 3apq_A          157 ----DRMLCRMKGVNS-----YP--SLFIF-RSGMAAVKYNGDRS  189 (210)
T ss_dssp             ----CHHHHHHTTCCS-----SS--EEEEE-CTTSCCEECCSCCC
T ss_pred             ----cHHHHHHcCCCc-----CC--eEEEE-ECCCceeEecCCCC
Confidence                346778889987     99  88878 99999888888543

>2xc2_A Thioredoxinn; oxidoreductase, protein disulfide reductase; 1.56A {Schistosoma mansoni} PDB: 2xbq_A 2xbi_A

Probab=99.35  E-value=6e-12  Score=89.02  Aligned_cols=75  Identities=25%  Similarity=0.333  Sum_probs=62.9

Q ss_pred             CCcCCCcEEEEEEcCCCChhhHHHHHHHHHHHHHHHHcCcEEEEEeCCCHHHHHHHHHHcCCCeEEEEcCChhHHHHhCC
Q 028030           90 SKFKGKPVVVYFYPADETPGCTKQACAFRDSYEKFKKAGAEVIGISGDDSSSHKAFAKKYRLPYTLLSDEGNKVRKEWGV  169 (215)
Q Consensus        90 ~~~~gk~~ll~f~~a~~C~~C~~~~~~l~~l~~~~~~~~v~vv~vs~d~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~g~  169 (215)
                      .+.+||+++|+|| ++||++|+...|.+.++++++   ++.++.|+.|                     .+.++.+.|++
T Consensus        29 ~~~~~~~~vv~f~-a~wC~~C~~~~~~~~~~~~~~---~~~~~~vd~~---------------------~~~~~~~~~~v   83 (117)
T 2xc2_A           29 EQHKNKLVVVDFF-ATWCGPCKTIAPLFKELSEKY---DAIFVKVDVD---------------------KLEETARKYNI   83 (117)
T ss_dssp             HHTTTSCEEEEEE-CTTCHHHHHHHHHHHHHHTTS---SSEEEEEETT---------------------TSHHHHHHTTC
T ss_pred             HhCCCCEEEEEEE-CCCCHhHHHHhHHHHHHHHHc---CcEEEEEECC---------------------ccHHHHHHcCC
Confidence            3346899999999 999999999999999998877   6899999874                     34567888999


Q ss_pred             CccCCCCCCccEEEEEcCCCcEEEEEeC
Q 028030          170 PADFFGSLPGRQTYILDKNGVVQLIYNN  197 (215)
Q Consensus       170 ~~~~~g~~p~~~~~lid~~G~v~~~~~g  197 (215)
                      ..     +|  +++++ ++|+++..+.|
T Consensus        84 ~~-----~P--t~~~~-~~G~~~~~~~G  103 (117)
T 2xc2_A           84 SA-----MP--TFIAI-KNGEKVGDVVG  103 (117)
T ss_dssp             CS-----SS--EEEEE-ETTEEEEEEES
T ss_pred             Cc-----cc--eEEEE-eCCcEEEEEeC
Confidence            87     99  65544 89999999888

>2vim_A Thioredoxin, TRX; thioredoxin fold, oxidoreductase; 1.38A {Fasciola hepatica}

Probab=99.34  E-value=1e-11  Score=85.52  Aligned_cols=74  Identities=20%  Similarity=0.305  Sum_probs=63.0

Q ss_pred             cCCCcEEEEEEcCCCChhhHHHHHHHHHHHHHHHHcCcEEEEEeCCCHHHHHHHHHHcCCCeEEEEcCChhHHHHhCCCc
Q 028030           92 FKGKPVVVYFYPADETPGCTKQACAFRDSYEKFKKAGAEVIGISGDDSSSHKAFAKKYRLPYTLLSDEGNKVRKEWGVPA  171 (215)
Q Consensus        92 ~~gk~~ll~f~~a~~C~~C~~~~~~l~~l~~~~~~~~v~vv~vs~d~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~g~~~  171 (215)
                      ..||+++|.|| ++||++|+...+.+.+++++++  ++.++.|+.|.                     ..++.+.|++..
T Consensus        17 ~~~~~~~v~f~-~~~C~~C~~~~~~l~~~~~~~~--~~~~~~v~~~~---------------------~~~~~~~~~v~~   72 (104)
T 2vim_A           17 NKGRLIVVDFF-AQWCGPCRNIAPKVEALAKEIP--EVEFAKVDVDQ---------------------NEEAAAKYSVTA   72 (104)
T ss_dssp             TTTSCEEEEEE-CTTCHHHHHHHHHHHHHHHHCT--TSEEEEEETTT---------------------CHHHHHHTTCCS
T ss_pred             cCCCeEEEEEE-CCCCHHHHHhhHHHHHHHHHCC--CCEEEEEeccC---------------------CHHHHHHcCCcc
Confidence            46899999999 9999999999999999998886  69999998753                     456778899987


Q ss_pred             cCCCCCCccEEEEEcCCCcEEEEEeC
Q 028030          172 DFFGSLPGRQTYILDKNGVVQLIYNN  197 (215)
Q Consensus       172 ~~~g~~p~~~~~lid~~G~v~~~~~g  197 (215)
                           +|  +++++ ++|+++..+.|
T Consensus        73 -----~P--t~~~~-~~g~~~~~~~G   90 (104)
T 2vim_A           73 -----MP--TFVFI-KDGKEVDRFSG   90 (104)
T ss_dssp             -----SS--EEEEE-ETTEEEEEEES
T ss_pred             -----cc--EEEEE-eCCcEEEEEeC
Confidence                 89  66655 59999999888

>1v98_A Thioredoxin; oxidoreductase, structural genomics, riken structural genomics/proteomics initiative, RSGI; 1.82A {Thermus thermophilus}

Probab=99.34  E-value=7.9e-12  Score=91.33  Aligned_cols=89  Identities=11%  Similarity=0.201  Sum_probs=63.7

Q ss_pred             CCCCCeeecCCcCCCcEEEEEEcCCCChhhHHHHHHHHHHHHHHHHcCcEEEEEeCCCHHHHHHHHHHcCCCeEEEEcCC
Q 028030           81 DQEGRNVSLSKFKGKPVVVYFYPADETPGCTKQACAFRDSYEKFKKAGAEVIGISGDDSSSHKAFAKKYRLPYTLLSDEG  160 (215)
Q Consensus        81 ~~~g~~~~l~~~~gk~~ll~f~~a~~C~~C~~~~~~l~~l~~~~~~~~v~vv~vs~d~~~~~~~~~~~~~~~~~~~~d~~  160 (215)
                      +.+++.+...-..++.+||+|| ++||++|+...+.+.++++++++ ++.++.|+.|.                     +
T Consensus        37 ~l~~~~~~~~~~~~~~vvv~f~-~~~C~~C~~~~~~l~~l~~~~~~-~v~~~~vd~~~---------------------~   93 (140)
T 1v98_A           37 EADEKGFAQEVAGAPLTLVDFF-APWCGPCRLVSPILEELARDHAG-RLKVVKVNVDE---------------------H   93 (140)
T ss_dssp             ------------CCCEEEEEEE-CTTCHHHHHHHHHHHHHHHHTTT-TEEEEEEETTT---------------------C
T ss_pred             cCCHHHHHHHHHcCCCEEEEEE-CCCCHHHHHHHHHHHHHHHHccC-ceEEEEEECCC---------------------C
Confidence            3444444322223334999999 99999999999999999999886 49999998754                     3


Q ss_pred             hhHHHHhCCCccCCCCCCccEEEEEcCCCcEEEEEeCCCC
Q 028030          161 NKVRKEWGVPADFFGSLPGRQTYILDKNGVVQLIYNNQFQ  200 (215)
Q Consensus       161 ~~~~~~~g~~~~~~g~~p~~~~~lid~~G~v~~~~~g~~~  200 (215)
                      ..+.+.|++..     +|  +++++ ++|+++..+.|..+
T Consensus        94 ~~l~~~~~v~~-----~P--t~~~~-~~G~~~~~~~G~~~  125 (140)
T 1v98_A           94 PGLAARYGVRS-----VP--TLVLF-RRGAPVATWVGASP  125 (140)
T ss_dssp             HHHHHHTTCCS-----SS--EEEEE-ETTEEEEEEESCCC
T ss_pred             HHHHHHCCCCc-----cC--EEEEE-eCCcEEEEEeCCCC
Confidence            46788899987     89  77777 79999999988643

>1xwb_A Thioredoxin; dimerization, redox regulation, THI X-RAY electron transport; 2.20A {Drosophila melanogaster} SCOP: c.47.1.1 PDB: 1xw9_A 1xwc_A 1xwa_A

Probab=99.34  E-value=1e-11  Score=85.74  Aligned_cols=75  Identities=23%  Similarity=0.334  Sum_probs=63.3

Q ss_pred             cCCCcEEEEEEcCCCChhhHHHHHHHHHHHHHHHHcCcEEEEEeCCCHHHHHHHHHHcCCCeEEEEcCChhHHHHhCCCc
Q 028030           92 FKGKPVVVYFYPADETPGCTKQACAFRDSYEKFKKAGAEVIGISGDDSSSHKAFAKKYRLPYTLLSDEGNKVRKEWGVPA  171 (215)
Q Consensus        92 ~~gk~~ll~f~~a~~C~~C~~~~~~l~~l~~~~~~~~v~vv~vs~d~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~g~~~  171 (215)
                      .+||+++|.|| ++||++|+...+.+.++++++++ ++.++.|+.|                     .+.++.+.|++..
T Consensus        18 ~~~~~~vv~f~-~~~C~~C~~~~~~l~~~~~~~~~-~~~~~~v~~~---------------------~~~~~~~~~~v~~   74 (106)
T 1xwb_A           18 ASGKLVVLDFF-ATWCGPCKMISPKLVELSTQFAD-NVVVLKVDVD---------------------ECEDIAMEYNISS   74 (106)
T ss_dssp             HTTSEEEEEEE-CTTCHHHHHHHHHHHHHHHHTTT-TEEEEEEETT---------------------TCHHHHHHTTCCS
T ss_pred             cCCCEEEEEEE-CCcCHHHHHhhHHHHHHHHHhCC-CeEEEEEecc---------------------chHHHHHHcCCCc
Confidence            36899999999 99999999999999999998863 5999999875                     3456788899987


Q ss_pred             cCCCCCCccEEEEEcCCCcEEEEEeC
Q 028030          172 DFFGSLPGRQTYILDKNGVVQLIYNN  197 (215)
Q Consensus       172 ~~~g~~p~~~~~lid~~G~v~~~~~g  197 (215)
                           +|  +++ +.++|+++..+.|
T Consensus        75 -----~P--t~~-~~~~G~~~~~~~g   92 (106)
T 1xwb_A           75 -----MP--TFV-FLKNGVKVEEFAG   92 (106)
T ss_dssp             -----SS--EEE-EEETTEEEEEEES
T ss_pred             -----cc--EEE-EEcCCcEEEEEcC
Confidence                 99  654 4479999999888

>2l6c_A Thioredoxin; oxidoreductase; NMR {Desulfovibrio vulgaris} PDB: 2l6d_A

Probab=99.34  E-value=5.6e-12  Score=88.44  Aligned_cols=75  Identities=13%  Similarity=0.306  Sum_probs=63.6

Q ss_pred             CCCcEEEEEEcCCCChhhHHHHHHHHHHHHHHHHcCcEEEEEeCCCHHHHHHHHHHcCCCeEEEEcCChhHHHHhCCCcc
Q 028030           93 KGKPVVVYFYPADETPGCTKQACAFRDSYEKFKKAGAEVIGISGDDSSSHKAFAKKYRLPYTLLSDEGNKVRKEWGVPAD  172 (215)
Q Consensus        93 ~gk~~ll~f~~a~~C~~C~~~~~~l~~l~~~~~~~~v~vv~vs~d~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~g~~~~  172 (215)
                      .++++||+|| ++||++|+...+.+.++.++++  ++.++.|..+                     ...++.+.|++.. 
T Consensus        18 ~~~~~vv~f~-a~wC~~C~~~~~~l~~~~~~~~--~v~~~~vd~~---------------------~~~~l~~~~~v~~-   72 (110)
T 2l6c_A           18 GLSDAIVFFH-KNLCPHCKNMEKVLDKFGARAP--QVAISSVDSE---------------------ARPELMKELGFER-   72 (110)
T ss_dssp             TCSEEEEEEE-CSSCSTHHHHHHHHHHHHTTCT--TSCEEEEEGG---------------------GCHHHHHHTTCCS-
T ss_pred             cCCCEEEEEE-CCCCHhHHHHHHHHHHHHHHCC--CcEEEEEcCc---------------------CCHHHHHHcCCcc-
Confidence            4689999999 9999999999999999988775  5888888753                     3456888999987 


Q ss_pred             CCCCCCccEEEEEcCCCcEEEEEeCCC
Q 028030          173 FFGSLPGRQTYILDKNGVVQLIYNNQF  199 (215)
Q Consensus       173 ~~g~~p~~~~~lid~~G~v~~~~~g~~  199 (215)
                          +|  +++++ ++|+++.++.|..
T Consensus        73 ----~P--t~~~~-~~G~~v~~~~G~~   92 (110)
T 2l6c_A           73 ----VP--TLVFI-RDGKVAKVFSGIM   92 (110)
T ss_dssp             ----SC--EEEEE-ESSSEEEEEESCC
T ss_pred             ----cC--EEEEE-ECCEEEEEEcCCC
Confidence                89  88888 8999999998854

>2qsi_A Putative hydrogenase expression/formation protein; HUPG, MCS SAD, structural genomics, protein structure initiative; 1.80A {Rhodopseudomonas palustris}

Probab=99.34  E-value=3e-12  Score=93.40  Aligned_cols=75  Identities=15%  Similarity=0.243  Sum_probs=65.5

Q ss_pred             CcEEEEEEcCCCC--hhhHHHHHHHHHHHHHHHHcCcEEEEEeCCCHHHHHHHHHHcCCCeEEEEcCChhHHHHhCCCcc
Q 028030           95 KPVVVYFYPADET--PGCTKQACAFRDSYEKFKKAGAEVIGISGDDSSSHKAFAKKYRLPYTLLSDEGNKVRKEWGVPAD  172 (215)
Q Consensus        95 k~~ll~f~~a~~C--~~C~~~~~~l~~l~~~~~~~~v~vv~vs~d~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~g~~~~  172 (215)
                      +++||+|| ++||  ++|+...|.|.++.++|.++ +.|+-|++                     |++.+++..||+.. 
T Consensus        34 ~~vlVdF~-A~wCr~gpCk~iaPvleela~e~~~~-v~~~KVdv---------------------De~~~la~~ygV~s-   89 (137)
T 2qsi_A           34 KIVVLFFR-GDAVRFPEAADLAVVLPELINAFPGR-LVAAEVAA---------------------EAERGLMARFGVAV-   89 (137)
T ss_dssp             SEEEEEEC-CCTTTCTTHHHHHHHHHHHHHTSTTT-EEEEEECG---------------------GGHHHHHHHHTCCS-
T ss_pred             CcEEEEEe-CCccCCCchhhHHhHHHHHHHHccCC-cEEEEEEC---------------------CCCHHHHHHcCCcc-
Confidence            49999999 9999  99999999999999999864 88888875                     55668999999998 


Q ss_pred             CCCCCCccEEEEEcCCCcEEEEEeCCCC
Q 028030          173 FFGSLPGRQTYILDKNGVVQLIYNNQFQ  200 (215)
Q Consensus       173 ~~g~~p~~~~~lid~~G~v~~~~~g~~~  200 (215)
                          +|  +.+++ +||+++.+..|..+
T Consensus        90 ----iP--TlilF-kdG~~v~~~vG~~~  110 (137)
T 2qsi_A           90 ----CP--SLAVV-QPERTLGVIAKIQD  110 (137)
T ss_dssp             ----SS--EEEEE-ECCEEEEEEESCCC
T ss_pred             ----CC--EEEEE-ECCEEEEEEeCCCC
Confidence                99  66666 89999999999654

>3h79_A Thioredoxin-like protein; thioredoxin fold, catalytic cysteines missing, unknown funct; 1.50A {Trypanosoma cruzi} SCOP: c.47.1.0

Probab=99.33  E-value=4.8e-12  Score=90.96  Aligned_cols=88  Identities=15%  Similarity=0.148  Sum_probs=68.3

Q ss_pred             CCCcEEEEEEcCCCChhhHHHHHHHHHHHHHHHH----cCcEEEEEeCCCHHHHHHHHHHcCCCeEEEEcCChhHHHHhC
Q 028030           93 KGKPVVVYFYPADETPGCTKQACAFRDSYEKFKK----AGAEVIGISGDDSSSHKAFAKKYRLPYTLLSDEGNKVRKEWG  168 (215)
Q Consensus        93 ~gk~~ll~f~~a~~C~~C~~~~~~l~~l~~~~~~----~~v~vv~vs~d~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~g  168 (215)
                      .++++||+|| ++||++|+...|.+.++++++..    .++.++.|..|                     .+.++.+.|+
T Consensus        32 ~~~~vlv~F~-a~wC~~C~~~~p~~~~la~~~~~~~~~~~v~~~~vd~~---------------------~~~~l~~~~~   89 (127)
T 3h79_A           32 PEKDVFVLYY-VPWSRHSVAAMRLWDDLSMSQSQKRNHLTFVAARIDGE---------------------KYPDVIERMR   89 (127)
T ss_dssp             TTCEEEEEEE-CTTCHHHHHHHHHHHHHHHHHHTSTTTTTEEEEEEETT---------------------TCHHHHHHTT
T ss_pred             CCCCEEEEEE-CCccHHHHHHhHHHHHHHHHHHhcccCCCeEEEEEEcc---------------------ccHhHHHhcC
Confidence            3799999999 99999999999999999998863    24777778764                     3557888999


Q ss_pred             CCccCCCCCCccEEEEEcCCCcEE-EEEeCCCCCCccHHHHHHHHh
Q 028030          169 VPADFFGSLPGRQTYILDKNGVVQ-LIYNNQFQPEKHIDETLKFLQ  213 (215)
Q Consensus       169 ~~~~~~g~~p~~~~~lid~~G~v~-~~~~g~~~~~~~~~~il~~l~  213 (215)
                      +..     +|  +++++++++++. ..+.|.    ...+++++.|+
T Consensus        90 v~~-----~P--t~~~~~~g~~~~~~~~~G~----~~~~~l~~~i~  124 (127)
T 3h79_A           90 VSG-----FP--TMRYYTRIDKQEPFEYSGQ----RYLSLVDSFVF  124 (127)
T ss_dssp             CCS-----SS--EEEEECSSCSSSCEECCSC----CCHHHHHHHHH
T ss_pred             Ccc-----CC--EEEEEeCCCCCCceEecCC----ccHHHHHHHHH
Confidence            987     99  899998777754 456564    34566666654

>3emx_A Thioredoxin; structural genomics, oxidoreductase, PSI-2, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.25A {Aeropyrum pernix}

Probab=99.33  E-value=2.4e-12  Score=93.77  Aligned_cols=95  Identities=9%  Similarity=0.090  Sum_probs=70.8

Q ss_pred             CCCcEEEEEEcCCCChhhHHHHHHHHHHHHHHHHcCcEEEEEeCCCHHHHHHHHHHcCCCeEEEEcCChhHHHHhCCCcc
Q 028030           93 KGKPVVVYFYPADETPGCTKQACAFRDSYEKFKKAGAEVIGISGDDSSSHKAFAKKYRLPYTLLSDEGNKVRKEWGVPAD  172 (215)
Q Consensus        93 ~gk~~ll~f~~a~~C~~C~~~~~~l~~l~~~~~~~~v~vv~vs~d~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~g~~~~  172 (215)
                      ++ ++||+|| ++||++|+...|.+.+++++++   +.++.|+.++..... .           .|...++.+.|++.. 
T Consensus        31 ~~-~vlv~F~-a~wC~~C~~~~p~l~~l~~~~~---v~~~~vd~~~~~~~~-~-----------~d~~~~l~~~~~v~~-   92 (135)
T 3emx_A           31 QG-DAILAVY-SKTCPHCHRDWPQLIQASKEVD---VPIVMFIWGSLIGER-E-----------LSAARLEMNKAGVEG-   92 (135)
T ss_dssp             TS-SEEEEEE-ETTCHHHHHHHHHHHHHHTTCC---SCEEEEEECTTCCHH-H-----------HHHHHHHHHHHTCCS-
T ss_pred             CC-cEEEEEE-CCcCHhhhHhChhHHHHHHHCC---CEEEEEECCCchhhh-h-----------hhhhHHHHHHcCCce-
Confidence            44 8999999 9999999999999999988775   889999875432110 0           133467888999987 


Q ss_pred             CCCCCCccEEEEEcCCCcEEEEEeCCCCCCccHHHHHHHHh
Q 028030          173 FFGSLPGRQTYILDKNGVVQLIYNNQFQPEKHIDETLKFLQ  213 (215)
Q Consensus       173 ~~g~~p~~~~~lid~~G~v~~~~~g~~~~~~~~~~il~~l~  213 (215)
                          +|  ++++++ +|+++..+.|... .+.++++++.+.
T Consensus        93 ----~P--t~~~~~-~G~~v~~~~G~~~-~~~~~~~i~~~~  125 (135)
T 3emx_A           93 ----TP--TLVFYK-EGRIVDKLVGATP-WSLKVEKAREIY  125 (135)
T ss_dssp             ----SS--EEEEEE-TTEEEEEEESCCC-HHHHHHHHHHHC
T ss_pred             ----eC--eEEEEc-CCEEEEEEeCCCC-HHHHHHHHHHHh
Confidence                99  666665 9999999999643 444555555443

>1zma_A Bacterocin transport accessory protein; alpha-beta-alpha-sandwich, structural genomics, PSI, protein structure initiative; HET: MSE; 1.25A {Streptococcus pneumoniae} SCOP: c.47.1.1

Probab=99.33  E-value=5.6e-12  Score=89.39  Aligned_cols=90  Identities=18%  Similarity=0.335  Sum_probs=66.2

Q ss_pred             CCCcEEEEEEcCCCChhhHHHHHHHHHHHHHHHHcCcEEEEEeCCCHHHHHHHHHHcCCCeEEEEcCChhHHHHhCCCcc
Q 028030           93 KGKPVVVYFYPADETPGCTKQACAFRDSYEKFKKAGAEVIGISGDDSSSHKAFAKKYRLPYTLLSDEGNKVRKEWGVPAD  172 (215)
Q Consensus        93 ~gk~~ll~f~~a~~C~~C~~~~~~l~~l~~~~~~~~v~vv~vs~d~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~g~~~~  172 (215)
                      .|+++||+|| ++||++|+...|.|.+++++++   ..++.+..+.....               +....+.+.||+.. 
T Consensus        28 ~~~~~~v~f~-a~wC~~C~~~~p~l~~~~~~~~---~~v~~~~~~~~~~~---------------~~~~~~~~~~~i~~-   87 (118)
T 1zma_A           28 KKETATFFIG-RKTCPYCRKFAGTLSGVVAETK---AHIYFINSEEPSQL---------------NDLQAFRSRYGIPT-   87 (118)
T ss_dssp             TTCCEEEEEE-CTTCHHHHHHHHHHHHHHHHHC---CCCEEEETTCGGGH---------------HHHHHHHHHHTCCS-
T ss_pred             CCCeEEEEEE-CCCCccHHHHHHHHHHHHHhcC---CeEEEEECCCcCcH---------------HHHHHHHHHcCCCC-
Confidence            4789999999 9999999999999999988765   45666666543211               12245778889987 


Q ss_pred             CCCCCCccEEEEEcCCCcEEEEEeCCCCCCccHHHHHHHHh
Q 028030          173 FFGSLPGRQTYILDKNGVVQLIYNNQFQPEKHIDETLKFLQ  213 (215)
Q Consensus       173 ~~g~~p~~~~~lid~~G~v~~~~~g~~~~~~~~~~il~~l~  213 (215)
                          +|  +++++ ++|+++.++.|..    ..+++.+.|+
T Consensus        88 ----~P--t~~~~-~~G~~~~~~~G~~----~~~~l~~~l~  117 (118)
T 1zma_A           88 ----VP--GFVHI-TDGQINVRCDSSM----SAQEIKDFAG  117 (118)
T ss_dssp             ----SC--EEEEE-ETTEEEEECCTTC----CHHHHHHHHT
T ss_pred             ----CC--eEEEE-ECCEEEEEecCCC----CHHHHHHHhh
Confidence                89  78777 5999998888743    2355666554

>3dxb_A Thioredoxin N-terminally fused to PUF60(UHM); splicing, FBP interacting repressor, RRM, electron TRAN redox-active center, transport; 2.20A {Escherichia coli O157}

Probab=99.31  E-value=8.7e-12  Score=98.42  Aligned_cols=77  Identities=17%  Similarity=0.311  Sum_probs=65.7

Q ss_pred             CCCcEEEEEEcCCCChhhHHHHHHHHHHHHHHHHcCcEEEEEeCCCHHHHHHHHHHcCCCeEEEEcCChhHHHHhCCCcc
Q 028030           93 KGKPVVVYFYPADETPGCTKQACAFRDSYEKFKKAGAEVIGISGDDSSSHKAFAKKYRLPYTLLSDEGNKVRKEWGVPAD  172 (215)
Q Consensus        93 ~gk~~ll~f~~a~~C~~C~~~~~~l~~l~~~~~~~~v~vv~vs~d~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~g~~~~  172 (215)
                      .+|++||+|| ++||++|+...|.+.+++++++++ +.++.|+.|                     .+..+.+.|++.. 
T Consensus        29 ~~k~vvv~F~-a~wC~~C~~~~p~l~~l~~~~~~~-v~~~~vd~d---------------------~~~~l~~~~~v~~-   84 (222)
T 3dxb_A           29 ADGAILVDFW-AEWCGPCKMIAPILDEIADEYQGK-LTVAKLNID---------------------QNPGTAPKYGIRG-   84 (222)
T ss_dssp             CSSCEEEEEE-CTTCHHHHHHHHHHHHHHHHTTTT-CEEEEEETT---------------------TCTTTGGGGTCCS-
T ss_pred             cCCEEEEEEE-CCcCHHHHHHHHHHHHHHHHhcCC-cEEEEEECC---------------------CCHHHHHHcCCCc-
Confidence            5799999999 999999999999999999999864 999999864                     3456788899987 


Q ss_pred             CCCCCCccEEEEEcCCCcEEEEEeCCCC
Q 028030          173 FFGSLPGRQTYILDKNGVVQLIYNNQFQ  200 (215)
Q Consensus       173 ~~g~~p~~~~~lid~~G~v~~~~~g~~~  200 (215)
                          +|  +++++ ++|+++..+.|...
T Consensus        85 ----~P--t~~~~-~~G~~~~~~~G~~~  105 (222)
T 3dxb_A           85 ----IP--TLLLF-KNGEVAATKVGALS  105 (222)
T ss_dssp             ----BS--EEEEE-ETTEEEEEEESCCC
T ss_pred             ----CC--EEEEE-ECCeEEEEeccccC
Confidence                99  77766 59999999988643

>2djj_A PDI, protein disulfide-isomerase; thioredoxin fold; NMR {Humicola insolens} SCOP: c.47.1.2 PDB: 2kp1_A

Probab=99.31  E-value=2.7e-12  Score=91.17  Aligned_cols=88  Identities=14%  Similarity=0.182  Sum_probs=64.9

Q ss_pred             EeCCCCCeeecC-CcCCCcEEEEEEcCCCChhhHHHHHHHHHHHHHHHH----cCcEEEEEeCCCHHHHHHHHHHcCCCe
Q 028030           79 LKDQEGRNVSLS-KFKGKPVVVYFYPADETPGCTKQACAFRDSYEKFKK----AGAEVIGISGDDSSSHKAFAKKYRLPY  153 (215)
Q Consensus        79 l~~~~g~~~~l~-~~~gk~~ll~f~~a~~C~~C~~~~~~l~~l~~~~~~----~~v~vv~vs~d~~~~~~~~~~~~~~~~  153 (215)
                      +.+++++.+... .-++|++||+|| ++||++|+...|.+.++++++++    .++.++.|..+..+             
T Consensus         9 v~~l~~~~f~~~v~~~~~~vlv~f~-a~wC~~C~~~~p~~~~~~~~~~~~~~~~~v~~~~vd~~~~~-------------   74 (121)
T 2djj_A            9 VTVVVAKNYNEIVLDDTKDVLIEFY-APWCGHCKALAPKYEELGALYAKSEFKDRVVIAKVDATAND-------------   74 (121)
T ss_dssp             SEECCTTTTTTSSSCTTSCEEEEEE-CSSCTTHHHHHHHHHHHHHHHTTSSCTTSSEEEEEETTTSC-------------
T ss_pred             eEEecccCHHHHhhcCCCCEEEEEE-CCCCHhHHHhhHHHHHHHHHHhhcccCCceEEEEEECcccc-------------
Confidence            344555544433 236899999999 99999999999999999999986    25888888875421             


Q ss_pred             EEEEcCChhHHHHhCCCccCCCCCCccEEEEEcCCCcE-EEEEeCC
Q 028030          154 TLLSDEGNKVRKEWGVPADFFGSLPGRQTYILDKNGVV-QLIYNNQ  198 (215)
Q Consensus       154 ~~~~d~~~~~~~~~g~~~~~~g~~p~~~~~lid~~G~v-~~~~~g~  198 (215)
                               +.+  ++..     +|  ++++++++|++ +..+.|.
T Consensus        75 ---------~~~--~v~~-----~P--t~~~~~~~~~~~~~~~~G~  102 (121)
T 2djj_A           75 ---------VPD--EIQG-----FP--TIKLYPAGAKGQPVTYSGS  102 (121)
T ss_dssp             ---------CSS--CCSS-----SS--EEEEECSSCTTSCCCCCCC
T ss_pred             ---------ccc--ccCc-----CC--eEEEEeCcCCCCceEecCC
Confidence                     122  6665     88  99999988885 4556664

>3uvt_A Thioredoxin domain-containing protein 5; thioredoxin-like fold, isomerase; 2.00A {Homo sapiens} PDB: 2diz_A 3uj1_A

Probab=99.31  E-value=9.9e-12  Score=86.56  Aligned_cols=87  Identities=14%  Similarity=0.217  Sum_probs=67.8

Q ss_pred             CCCcEEEEEEcCCCChhhHHHHHHHHHHHHHHHHc--CcEEEEEeCCCHHHHHHHHHHcCCCeEEEEcCChhHHHHhCCC
Q 028030           93 KGKPVVVYFYPADETPGCTKQACAFRDSYEKFKKA--GAEVIGISGDDSSSHKAFAKKYRLPYTLLSDEGNKVRKEWGVP  170 (215)
Q Consensus        93 ~gk~~ll~f~~a~~C~~C~~~~~~l~~l~~~~~~~--~v~vv~vs~d~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~g~~  170 (215)
                      +++++||+|| ++||++|+...|.+.++.+++.+.  ++.++.|+.+.                     +.++.+.|++.
T Consensus        20 ~~~~~lv~f~-~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~~vd~~~---------------------~~~l~~~~~v~   77 (111)
T 3uvt_A           20 AEGITFIKFY-APWCGHCKTLAPTWEELSKKEFPGLAGVKIAEVDCTA---------------------ERNICSKYSVR   77 (111)
T ss_dssp             HSSEEEEEEE-CSSCHHHHHHHHHHHHHHTCCCCC-CCEEEEEEETTT---------------------CHHHHHHTTCC
T ss_pred             cCCcEEEEEE-CCCChhHHHhhHHHHHHHHHhhccCCceEEEEEeccc---------------------cHhHHHhcCCC
Confidence            3789999999 999999999999999998877543  68888887643                     34578889998


Q ss_pred             ccCCCCCCccEEEEEcCCCcEEEEEeCCCCCCccHHHHHHHHh
Q 028030          171 ADFFGSLPGRQTYILDKNGVVQLIYNNQFQPEKHIDETLKFLQ  213 (215)
Q Consensus       171 ~~~~g~~p~~~~~lid~~G~v~~~~~g~~~~~~~~~~il~~l~  213 (215)
                      .     +|  +++++ ++|+++..+.|..    ..+++.+.|+
T Consensus        78 ~-----~P--t~~~~-~~g~~~~~~~g~~----~~~~l~~~l~  108 (111)
T 3uvt_A           78 G-----YP--TLLLF-RGGKKVSEHSGGR----DLDSLHRFVL  108 (111)
T ss_dssp             S-----SS--EEEEE-ETTEEEEEECSCC----SHHHHHHHHH
T ss_pred             c-----cc--EEEEE-eCCcEEEeccCCc----CHHHHHHHHH
Confidence            7     99  76666 7999998888853    3455555554

>2dj0_A Thioredoxin-related transmembrane protein 2; AVLA237, CGI-31 protein, TXNDC14, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.31  E-value=7.8e-12  Score=91.08  Aligned_cols=79  Identities=18%  Similarity=0.230  Sum_probs=63.9

Q ss_pred             CCCcEEEEEEcCCCChhhHHHHHHHHHHHHHHHHcCcEEEEEeCCCHHHHHHHHHHcCCCeEEEEcCChhHHHHhCCC--
Q 028030           93 KGKPVVVYFYPADETPGCTKQACAFRDSYEKFKKAGAEVIGISGDDSSSHKAFAKKYRLPYTLLSDEGNKVRKEWGVP--  170 (215)
Q Consensus        93 ~gk~~ll~f~~a~~C~~C~~~~~~l~~l~~~~~~~~v~vv~vs~d~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~g~~--  170 (215)
                      +++++||+|| ++||++|+...|.+.++++++++.++.++.|..|..                     .++.+.|++.  
T Consensus        25 ~~~~vlv~f~-a~wC~~C~~~~p~~~~l~~~~~~~~v~~~~vd~~~~---------------------~~~~~~~~v~~~   82 (137)
T 2dj0_A           25 KRVTWIVEFF-ANWSNDCQSFAPIYADLSLKYNCTGLNFGKVDVGRY---------------------TDVSTRYKVSTS   82 (137)
T ss_dssp             TTSCEEEEEC-CTTCSTTTTTHHHHHHHHHHHCSSSCEEEECCTTTC---------------------HHHHHHTTCCCC
T ss_pred             CCCEEEEEEE-CCCCHHHHHHHHHHHHHHHHhCCCCeEEEEEeCccC---------------------HHHHHHccCccc
Confidence            4679999999 999999999999999999999865699998887543                     3455666665  


Q ss_pred             ----ccCCCCCCccEEEEEcCCCcEEEEEeCCCCC
Q 028030          171 ----ADFFGSLPGRQTYILDKNGVVQLIYNNQFQP  201 (215)
Q Consensus       171 ----~~~~g~~p~~~~~lid~~G~v~~~~~g~~~~  201 (215)
                          .     +|  +++++ ++|+++..+.|....
T Consensus        83 ~~~~~-----~P--t~~~~-~~G~~~~~~~G~~~~  109 (137)
T 2dj0_A           83 PLTKQ-----LP--TLILF-QGGKEAMRRPQIDKK  109 (137)
T ss_dssp             SSSSC-----SS--EEEEE-SSSSEEEEESCBCSS
T ss_pred             CCcCC-----CC--EEEEE-ECCEEEEEecCcCch
Confidence                5     88  77777 799999988886543

>2i1u_A Thioredoxin, TRX, MPT46; redox protein, electron transport; 1.30A {Mycobacterium tuberculosis} PDB: 3nof_A 3o6t_A* 2l4q_A 2l59_A

Probab=99.30  E-value=3.2e-11  Score=85.41  Aligned_cols=86  Identities=19%  Similarity=0.217  Sum_probs=68.5

Q ss_pred             CCCcEEEEEEcCCCChhhHHHHHHHHHHHHHHHHcCcEEEEEeCCCHHHHHHHHHHcCCCeEEEEcCChhHHHHhCCCcc
Q 028030           93 KGKPVVVYFYPADETPGCTKQACAFRDSYEKFKKAGAEVIGISGDDSSSHKAFAKKYRLPYTLLSDEGNKVRKEWGVPAD  172 (215)
Q Consensus        93 ~gk~~ll~f~~a~~C~~C~~~~~~l~~l~~~~~~~~v~vv~vs~d~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~g~~~~  172 (215)
                      .+|++||+|| ++||++|+...+.+.++++++++ ++.++.|+.|.                     +..+.+.|++.. 
T Consensus        29 ~~~~~lv~f~-~~~C~~C~~~~~~~~~~~~~~~~-~~~~~~v~~~~---------------------~~~~~~~~~i~~-   84 (121)
T 2i1u_A           29 SNKPVLVDFW-ATWCGPCKMVAPVLEEIATERAT-DLTVAKLDVDT---------------------NPETARNFQVVS-   84 (121)
T ss_dssp             CSSCEEEEEE-CTTCHHHHHHHHHHHHHHHHTTT-TCEEEEEETTT---------------------CHHHHHHTTCCS-
T ss_pred             CCCcEEEEEE-CCCCHHHHHHHHHHHHHHHHhcC-CeEEEEEECCC---------------------CHHHHHhcCCCc-
Confidence            4789999999 99999999999999999998875 49999998753                     346778899987 


Q ss_pred             CCCCCCccEEEEEcCCCcEEEEEeCCCCCCccHHHHHHHHh
Q 028030          173 FFGSLPGRQTYILDKNGVVQLIYNNQFQPEKHIDETLKFLQ  213 (215)
Q Consensus       173 ~~g~~p~~~~~lid~~G~v~~~~~g~~~~~~~~~~il~~l~  213 (215)
                          +|  +++++ ++|+++..+.|...    .+++.+.|+
T Consensus        85 ----~P--t~~~~-~~g~~~~~~~G~~~----~~~l~~~l~  114 (121)
T 2i1u_A           85 ----IP--TLILF-KDGQPVKRIVGAKG----KAALLRELS  114 (121)
T ss_dssp             ----SS--EEEEE-ETTEEEEEEESCCC----HHHHHHHTC
T ss_pred             ----CC--EEEEE-ECCEEEEEecCCCC----HHHHHHHHH
Confidence                89  76666 59999998888532    344555444

>2qgv_A Hydrogenase-1 operon protein HYAE; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; 2.70A {Shigella flexneri 2A} PDB: 2hfd_A

Probab=99.30  E-value=2.4e-12  Score=94.27  Aligned_cols=78  Identities=15%  Similarity=0.240  Sum_probs=65.8

Q ss_pred             CCCcEEEEEEcCCC--ChhhHHHHHHHHHHHHHHHHcCcEEEEEeCCCHHHHHHHHHHcCCCeEEEEcCChhHHHHhCCC
Q 028030           93 KGKPVVVYFYPADE--TPGCTKQACAFRDSYEKFKKAGAEVIGISGDDSSSHKAFAKKYRLPYTLLSDEGNKVRKEWGVP  170 (215)
Q Consensus        93 ~gk~~ll~f~~a~~--C~~C~~~~~~l~~l~~~~~~~~v~vv~vs~d~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~g~~  170 (215)
                      .++++||+|| +.|  |++|+...|.|.+++++|.++.+.|+-|++                     |++.+++..||+.
T Consensus        33 ~~~~vlVdF~-a~~crCgpCk~iaPvleela~e~~g~~v~~~KVdv---------------------De~~~lA~~ygV~   90 (140)
T 2qgv_A           33 QAPDGVVLLS-SDPKRTPEVSDNPVMIGELLHEFPDYTWQVAIADL---------------------EQSEAIGDRFGAF   90 (140)
T ss_dssp             TCSSEEEEEC-CCTTTCTTTTHHHHHHHHHHTTCTTSCCEEEECCH---------------------HHHHHHHHHHTCC
T ss_pred             CCCCEEEEEe-CCcccCCcHHHHHhHHHHHHHHcCCCeEEEEEEEC---------------------CCCHHHHHHcCCc
Confidence            4578999999 988  999999999999999999753388888875                     5566899999999


Q ss_pred             ccCCCCCCccEEEEEcCCCcEEEEEeCCCC
Q 028030          171 ADFFGSLPGRQTYILDKNGVVQLIYNNQFQ  200 (215)
Q Consensus       171 ~~~~g~~p~~~~~lid~~G~v~~~~~g~~~  200 (215)
                      .     +|  +++++ +||+++.+..|..+
T Consensus        91 s-----IP--TlilF-k~G~~v~~~~G~~~  112 (140)
T 2qgv_A           91 R-----FP--ATLVF-TGGNYRGVLNGIHP  112 (140)
T ss_dssp             S-----SS--EEEEE-ETTEEEEEEESCCC
T ss_pred             c-----CC--EEEEE-ECCEEEEEEecCCC
Confidence            8     99  66666 89999999999643

>3aps_A DNAJ homolog subfamily C member 10; thioredoxin fold, CXXC motif, endoplasmic reticulum, oxidore; 1.90A {Mus musculus}

Probab=99.28  E-value=8.8e-12  Score=88.64  Aligned_cols=74  Identities=16%  Similarity=0.076  Sum_probs=61.6

Q ss_pred             CCCcEEEEEEcCCCChhhHHHHHHHHHHHHHHHHcCcEEEEEeCCCHHHHHHHHHHcCCCeEEEEcCChhHHHHhCCCcc
Q 028030           93 KGKPVVVYFYPADETPGCTKQACAFRDSYEKFKKAGAEVIGISGDDSSSHKAFAKKYRLPYTLLSDEGNKVRKEWGVPAD  172 (215)
Q Consensus        93 ~gk~~ll~f~~a~~C~~C~~~~~~l~~l~~~~~~~~v~vv~vs~d~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~g~~~~  172 (215)
                      .+|++||+|| ++||++|+...|.+.++++++++ ++.++.|..+.                     +.++.+.|++.. 
T Consensus        20 ~~~~~lv~f~-a~~C~~C~~~~~~~~~~~~~~~~-~~~~~~vd~~~---------------------~~~~~~~~~v~~-   75 (122)
T 3aps_A           20 GKTHWVVDFY-APWCGPCQNFAPEFELLARMIKG-KVRAGKVDCQA---------------------YPQTCQKAGIKA-   75 (122)
T ss_dssp             CSSCEEEEEE-CTTCHHHHHHHHHHHHHHHHHTT-TCEEEEEETTT---------------------CHHHHHHTTCCS-
T ss_pred             CCCeEEEEEE-CCCCHHHHHHHHHHHHHHHHhcC-CeEEEEEeCcC---------------------CHHHHHHcCCCc-
Confidence            4789999999 99999999999999999999886 59999998754                     346778899987 


Q ss_pred             CCCCCCccEEEEEcCCCcEEEEEeC
Q 028030          173 FFGSLPGRQTYILDKNGVVQLIYNN  197 (215)
Q Consensus       173 ~~g~~p~~~~~lid~~G~v~~~~~g  197 (215)
                          +|  ++++++++|++ ..+.|
T Consensus        76 ----~P--t~~~~~~~~~~-~~~~g   93 (122)
T 3aps_A           76 ----YP--SVKLYQYERAK-KSIWE   93 (122)
T ss_dssp             ----SS--EEEEEEEEGGG-TEEEE
T ss_pred             ----cc--eEEEEeCCCcc-ceeec
Confidence                89  99999888874 33433

>3ph9_A Anterior gradient protein 3 homolog; thioredoxin fold, protein disulfide isomerase, endoplasmic R isomerase; 1.83A {Homo sapiens} SCOP: c.47.1.0 PDB: 2lns_A 2lnt_A

Probab=99.25  E-value=4.4e-12  Score=94.50  Aligned_cols=91  Identities=10%  Similarity=0.112  Sum_probs=61.9

Q ss_pred             CCCcEEEEEEcCCCChhhHHHHHHHHHHHH--HHHHcCcEEEEEeCCCHHHHHHHHHHcCCCeEEEEcCChhHHHHhCCC
Q 028030           93 KGKPVVVYFYPADETPGCTKQACAFRDSYE--KFKKAGAEVIGISGDDSSSHKAFAKKYRLPYTLLSDEGNKVRKEWGVP  170 (215)
Q Consensus        93 ~gk~~ll~f~~a~~C~~C~~~~~~l~~l~~--~~~~~~v~vv~vs~d~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~g~~  170 (215)
                      .||++||+|| ++||++|+...|.+.+..+  ++.+  ..++.|.+|+.                    ..++...|++.
T Consensus        43 ~~KpVlV~F~-A~WC~~Ck~m~p~~~~~~~~~~~~~--~~fv~V~vD~e--------------------~~~~~~~~~v~   99 (151)
T 3ph9_A           43 SKKPLMVIHH-LEDCQYSQALKKVFAQNEEIQEMAQ--NKFIMLNLMHE--------------------TTDKNLSPDGQ   99 (151)
T ss_dssp             HTCCEEEEEC-CTTCHHHHHHHHHHHHCHHHHHHHH--HTCEEEEESSC--------------------CSCGGGCTTCC
T ss_pred             cCCcEEEEEE-CCCCHhHHHHHHHHhcCHHHHHHhh--cCeEEEEecCC--------------------chhhHhhcCCC
Confidence            5899999999 9999999999998887522  2222  23444444321                    11234566776


Q ss_pred             ccCCCCCCccEEEEEcCCCcEEEEEeCCCCC------CccHHHHHHHHh
Q 028030          171 ADFFGSLPGRQTYILDKNGVVQLIYNNQFQP------EKHIDETLKFLQ  213 (215)
Q Consensus       171 ~~~~g~~p~~~~~lid~~G~v~~~~~g~~~~------~~~~~~il~~l~  213 (215)
                      +     +|  +++++|++|+++....|....      ..+++++++.++
T Consensus       100 ~-----~P--T~~f~~~~G~~v~~~~G~~~~~~~~~~~~~~~~ll~~~~  141 (151)
T 3ph9_A          100 Y-----VP--RIMFVDPSLTVRADIAGRYSNRLYTYEPRDLPLLIENMK  141 (151)
T ss_dssp             C-----SS--EEEEECTTSCBCTTCCCSCTTSTTCCCGGGHHHHHHHHH
T ss_pred             C-----CC--EEEEECCCCCEEEEEeCCcCCcccccchhhHHHHHHHHH
Confidence            5     89  999999999999988886111      245566666554

>1oaz_A Thioredoxin 1; immune system, antibody/complex, antibody, allergy, IGE, conformational diversity, multispecficity, redox-active center; 2.77A {Escherichia coli} SCOP: c.47.1.1

Probab=99.25  E-value=1.3e-11  Score=88.60  Aligned_cols=86  Identities=17%  Similarity=0.315  Sum_probs=65.3

Q ss_pred             CCCcEEEEEEcCCCCh--------------hhHHHHHHHHHHHHHHHHcCcEEEEEeCCCHHHHHHHHHHcCCCeEEEEc
Q 028030           93 KGKPVVVYFYPADETP--------------GCTKQACAFRDSYEKFKKAGAEVIGISGDDSSSHKAFAKKYRLPYTLLSD  158 (215)
Q Consensus        93 ~gk~~ll~f~~a~~C~--------------~C~~~~~~l~~l~~~~~~~~v~vv~vs~d~~~~~~~~~~~~~~~~~~~~d  158 (215)
                      .||++||+|| ++||+              +|+...|.+.+++++++++ +.++.|+.|                     
T Consensus        20 ~~k~vlv~F~-a~wC~~c~~l~~~~~~~~~~C~~~~p~~~~l~~~~~~~-~~~~~vd~d---------------------   76 (123)
T 1oaz_A           20 ADGAILVDFW-AEWCGPIEESDDRRYDLVGPCKMIAPILDEIADEYQGK-LTVAKLNID---------------------   76 (123)
T ss_dssp             CSSEEEEEEE-CSSCSCBSSSTTSCCSCCCCCCTTHHHHTTC--------CEEEEEETT---------------------
T ss_pred             CCCeEEEEEE-CCCCccccccccccccCCCCcHHHHHHHHHHHHHhcCC-eEEEEEECC---------------------
Confidence            5799999999 99999              9999999999999998864 899988864                     


Q ss_pred             CChhHHHHhCCCccCCCCCCccEEEEEcCCCcEEEEEeCCCCCCccHHHHHHHHh
Q 028030          159 EGNKVRKEWGVPADFFGSLPGRQTYILDKNGVVQLIYNNQFQPEKHIDETLKFLQ  213 (215)
Q Consensus       159 ~~~~~~~~~g~~~~~~g~~p~~~~~lid~~G~v~~~~~g~~~~~~~~~~il~~l~  213 (215)
                      .+.++.+.||+..     +|  +++++ ++|+++..+.|..+    .+++.+.|+
T Consensus        77 ~~~~l~~~~~v~~-----~P--t~~~~-~~G~~~~~~~G~~~----~~~l~~~l~  119 (123)
T 1oaz_A           77 QNPGTAPKYGIRG-----IP--TLLLF-KNGEVAATKVGALS----KGQLKEFLD  119 (123)
T ss_dssp             SCTTTGGGGTCCB-----SS--EEEEE-ESSSEEEEEESCCC----HHHHHHHHT
T ss_pred             CCHHHHHHcCCCc-----cC--EEEEE-ECCEEEEEEeCCCC----HHHHHHHHH
Confidence            3457888999987     89  88888 89999999888532    344555554

>3idv_A Protein disulfide-isomerase A4; thioredoxin-like fold, disulfide bond, endoplasmic reticulum isomerase, redox-active center; 1.95A {Homo sapiens} PDB: 2dj2_A

Probab=99.25  E-value=2e-11  Score=96.69  Aligned_cols=89  Identities=18%  Similarity=0.206  Sum_probs=67.9

Q ss_pred             CCCCCeeecCCcCCCcEEEEEEcCCCChhhHHHHHHHHHHHHHHHHcC--cEEEEEeCCCHHHHHHHHHHcCCCeEEEEc
Q 028030           81 DQEGRNVSLSKFKGKPVVVYFYPADETPGCTKQACAFRDSYEKFKKAG--AEVIGISGDDSSSHKAFAKKYRLPYTLLSD  158 (215)
Q Consensus        81 ~~~g~~~~l~~~~gk~~ll~f~~a~~C~~C~~~~~~l~~l~~~~~~~~--v~vv~vs~d~~~~~~~~~~~~~~~~~~~~d  158 (215)
                      .++++.+...-.+||+++|+|| ++||++|+...|.+.++++++++.+  +.++.|..+                     
T Consensus        19 ~l~~~~~~~~~~~~~~v~v~F~-a~wC~~C~~~~p~~~~~~~~~~~~~~~~~~~~vd~~---------------------   76 (241)
T 3idv_A           19 VLNDANFDNFVADKDTVLLEFY-APWCGHCKQFAPEYEKIANILKDKDPPIPVAKIDAT---------------------   76 (241)
T ss_dssp             EECTTTHHHHHTTCSEEEEEEE-CTTCHHHHHHHHHHHHHHHHHHTSSSCCCEEEEETT---------------------
T ss_pred             EecccCHHHHHhcCCeEEEEEE-CCCCHHHHHhhHHHHHHHHHHhhcCCceEEEEEecc---------------------
Confidence            3444444332236899999999 9999999999999999999998765  888888763                     


Q ss_pred             CChhHHHHhCCCccCCCCCCccEEEEEcCCCcEEEEEeCCCC
Q 028030          159 EGNKVRKEWGVPADFFGSLPGRQTYILDKNGVVQLIYNNQFQ  200 (215)
Q Consensus       159 ~~~~~~~~~g~~~~~~g~~p~~~~~lid~~G~v~~~~~g~~~  200 (215)
                      .+.++.+.|++..     +|  ++++++ +|+++ .+.|...
T Consensus        77 ~~~~l~~~~~v~~-----~P--t~~~~~-~g~~~-~~~g~~~  109 (241)
T 3idv_A           77 SASVLASRFDVSG-----YP--TIKILK-KGQAV-DYEGSRT  109 (241)
T ss_dssp             TCHHHHHHTTCCS-----SS--EEEEEE-TTEEE-ECCSCSC
T ss_pred             CCHHHHHhcCCCc-----CC--EEEEEc-CCCcc-cccCccc
Confidence            4457888999997     99  888885 67766 3666443

>2dbc_A PDCL2, unnamed protein product; phosducin-like protein, thioredoxin_FOLD, structural genomics, NPPSFA; NMR {Mus musculus}

Probab=99.23  E-value=3.1e-11  Score=87.95  Aligned_cols=72  Identities=17%  Similarity=0.251  Sum_probs=59.7

Q ss_pred             CCCcEEEEEEcCCCChhhHHHHHHHHHHHHHHHHcCcEEEEEeCCCHHHHHHHHHHcCCCeEEEEcCChhHHHHhCCCcc
Q 028030           93 KGKPVVVYFYPADETPGCTKQACAFRDSYEKFKKAGAEVIGISGDDSSSHKAFAKKYRLPYTLLSDEGNKVRKEWGVPAD  172 (215)
Q Consensus        93 ~gk~~ll~f~~a~~C~~C~~~~~~l~~l~~~~~~~~v~vv~vs~d~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~g~~~~  172 (215)
                      +||++||+|| ++||++|+...|.|.++++++.  ++.++.|..+...                        ..|++.. 
T Consensus        29 ~~~~vvv~f~-a~wC~~C~~~~p~l~~la~~~~--~v~~~~vd~~~~~------------------------~~~~i~~-   80 (135)
T 2dbc_A           29 KDLWVVIHLY-RSSVPMCLVVNQHLSVLARKFP--ETKFVKAIVNSCI------------------------EHYHDNC-   80 (135)
T ss_dssp             SSCEEEEEEC-CTTCHHHHHHHHHHHHHHHHCS--SEEEEEECCSSSC------------------------SSCCSSC-
T ss_pred             CCCEEEEEEE-CCCChHHHHHHHHHHHHHHHCC--CcEEEEEEhhcCc------------------------ccCCCCC-
Confidence            4689999999 9999999999999999998885  5888888876530                        4678876 


Q ss_pred             CCCCCCccEEEEEcCCCcEEEEEeCCC
Q 028030          173 FFGSLPGRQTYILDKNGVVQLIYNNQF  199 (215)
Q Consensus       173 ~~g~~p~~~~~lid~~G~v~~~~~g~~  199 (215)
                          +|  ++++++ +|+++..+.|..
T Consensus        81 ----~P--t~~~~~-~G~~v~~~~G~~  100 (135)
T 2dbc_A           81 ----LP--TIFVYK-NGQIEGKFIGII  100 (135)
T ss_dssp             ----CS--EEEEES-SSSCSEEEESTT
T ss_pred             ----CC--EEEEEE-CCEEEEEEEeEE
Confidence                89  777775 999999988854

>3ira_A Conserved protein; methanosarcina mazei,structural genomics, MCSG, protein structure initiative, midwest center for STRU genomics; 2.10A {Methanosarcina mazei}

Probab=99.21  E-value=2.8e-10  Score=86.52  Aligned_cols=104  Identities=10%  Similarity=0.036  Sum_probs=67.8

Q ss_pred             eecCCcCCCcEEEEEEcCCCChhhHHHHHH---HHHHHHHHHHcCcEEEEEeCCCHHHH-HHHHHHcCCCeEEEEcCChh
Q 028030           87 VSLSKFKGKPVVVYFYPADETPGCTKQACA---FRDSYEKFKKAGAEVIGISGDDSSSH-KAFAKKYRLPYTLLSDEGNK  162 (215)
Q Consensus        87 ~~l~~~~gk~~ll~f~~a~~C~~C~~~~~~---l~~l~~~~~~~~v~vv~vs~d~~~~~-~~~~~~~~~~~~~~~d~~~~  162 (215)
                      +......||++||+|| ++||++|+...+.   ..++.+.+.+ ++.++.|..|...++ +.|.+              .
T Consensus        32 ~~~A~~~~KpVlvdF~-A~WC~~Ck~m~~~~f~~~~va~~l~~-~fv~ikVD~de~~~l~~~y~~--------------~   95 (173)
T 3ira_A           32 FEKARKENKPVFLSIG-YSTCHWCHMMAHESFEDEEVAGLMNE-AFVSIKVDREERPDIDNIYMT--------------V   95 (173)
T ss_dssp             HHHHHHHTCCEEEEEE-CTTCHHHHHHHHHTTTCHHHHHHHHH-HCEEEEEETTTCHHHHHHHHH--------------H
T ss_pred             HHHHHHhCCCEEEecc-cchhHhhccccccccCCHHHHHHHHh-cCceeeeCCcccCcHHHHHHH--------------H
Confidence            3444446899999999 9999999987773   2455555554 488888887754333 33322              1


Q ss_pred             HHHHhCCCccCCCCCCccEEEEEcCCCcEEEEEeCC----CCCCccHHHHHHHHh
Q 028030          163 VRKEWGVPADFFGSLPGRQTYILDKNGVVQLIYNNQ----FQPEKHIDETLKFLQ  213 (215)
Q Consensus       163 ~~~~~g~~~~~~g~~p~~~~~lid~~G~v~~~~~g~----~~~~~~~~~il~~l~  213 (215)
                      +...+|+.+     +|  +++++|++|+++.....-    ....+.+.++|+.+.
T Consensus        96 ~q~~~gv~g-----~P--t~v~l~~dG~~v~~~ty~p~~~~~~~~~f~~~L~~v~  143 (173)
T 3ira_A           96 CQIILGRGG-----WP--LNIIMTPGKKPFFAGTYIPKNTRFNQIGMLELVPRIK  143 (173)
T ss_dssp             HHHHHSCCC-----SS--EEEEECTTSCEEEEESSCCSSCBTTBCCHHHHHHHHH
T ss_pred             HHHHcCCCC-----Cc--ceeeECCCCCceeeeeeCCCCcCCCCCCHHHHHHHHH
Confidence            222357776     99  999999999998763211    011234666666554

>3t58_A Sulfhydryl oxidase 1; oxidoreductase; HET: FAD; 2.40A {Mus musculus} PDB: 3t59_A*

Probab=99.20  E-value=3.1e-11  Score=106.60  Aligned_cols=94  Identities=12%  Similarity=0.163  Sum_probs=73.8

Q ss_pred             CCCcEEEEEEcCCCChhhHHHHHHHHHHHHHHHH--cCcEEEEEeCCCHHHHHHHHHHcCCCeEEEEcCChhHHHHhCCC
Q 028030           93 KGKPVVVYFYPADETPGCTKQACAFRDSYEKFKK--AGAEVIGISGDDSSSHKAFAKKYRLPYTLLSDEGNKVRKEWGVP  170 (215)
Q Consensus        93 ~gk~~ll~f~~a~~C~~C~~~~~~l~~l~~~~~~--~~v~vv~vs~d~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~g~~  170 (215)
                      .||++||+|| ++||++|+...|.+.++++++++  .++.|+.|+.|+                   |.+.++.+.|++.
T Consensus        29 ~~k~vlV~Fy-A~WC~pCk~~~P~l~~la~~~~~~~~~v~~~~VD~d~-------------------d~~~~l~~~~~V~   88 (519)
T 3t58_A           29 SSSAWAVEFF-ASWCGHAIAFAPTWKELANDVKDWRPALNLAVLDCAE-------------------ETNSAVCREFNIA   88 (519)
T ss_dssp             CSSEEEEEEE-CTTSHHHHHHHHHHHHHHHHHGGGTTTEEEEEEETTS-------------------GGGHHHHHHTTCC
T ss_pred             CCCeEEEEEE-CCCCHHHHHHHHHHHHHHHHhhCcCCcEEEEEEECCc-------------------cccHHHHHHcCCc
Confidence            3689999999 99999999999999999999986  259999998864                   3356888999999


Q ss_pred             ccCCCCCCccEEEEEcC---CCcEEEEEeCCCCCCccHHHHHHHHh
Q 028030          171 ADFFGSLPGRQTYILDK---NGVVQLIYNNQFQPEKHIDETLKFLQ  213 (215)
Q Consensus       171 ~~~~g~~p~~~~~lid~---~G~v~~~~~g~~~~~~~~~~il~~l~  213 (215)
                      .     +|  +++++++   +|+++....|..+.+...+.+.+.++
T Consensus        89 ~-----~P--Tl~~f~~g~~~G~~~~~~~g~~~~~~L~~~l~~~l~  127 (519)
T 3t58_A           89 G-----FP--TVRFFQAFTKNGSGATLPGAGANVQTLRMRLIDALE  127 (519)
T ss_dssp             S-----BS--EEEEECTTCCSCCCEEECCSSCCHHHHHHHHHHHHT
T ss_pred             c-----cC--EEEEEcCcccCCCceeEecCCCCHHHHHHHHHHHHh
Confidence            7     99  9999997   78777777765444443344444443

>1wou_A Thioredoxin -related protein, 14 kDa; electron transport; 1.80A {Homo sapiens} SCOP: c.47.1.16 PDB: 1v9w_A

Probab=99.20  E-value=5.6e-11  Score=85.03  Aligned_cols=77  Identities=21%  Similarity=0.350  Sum_probs=64.1

Q ss_pred             cCCCcEEEEEEcCC-------CChhhHHHHHHHHHHHHHHHHcCcEEEEEeCCCHHHHHHHHHHcCCCeEEEEcCChhHH
Q 028030           92 FKGKPVVVYFYPAD-------ETPGCTKQACAFRDSYEKFKKAGAEVIGISGDDSSSHKAFAKKYRLPYTLLSDEGNKVR  164 (215)
Q Consensus        92 ~~gk~~ll~f~~a~-------~C~~C~~~~~~l~~l~~~~~~~~v~vv~vs~d~~~~~~~~~~~~~~~~~~~~d~~~~~~  164 (215)
                      ..||+++|+|| ++       ||++|+...|.|.++++++++ ++.++.|.+++...+              .|....+.
T Consensus        22 ~~~~~v~v~F~-a~~~~~~~~wC~~C~~~~p~l~~~~~~~~~-~~~~~~vd~~~~~~~--------------~d~~~~~~   85 (123)
T 1wou_A           22 HNGKTIFAYFT-GSKDAGGKSWCPDCVQAEPVVREGLKHISE-GCVFIYCQVGEKPYW--------------KDPNNDFR   85 (123)
T ss_dssp             TTTSEEEEEEE-CCBCTTCCBSCHHHHHHHHHHHHHGGGCCT-TEEEEEEECCCHHHH--------------HCTTCHHH
T ss_pred             hCCCEEEEEEE-ccCCCCCCCcCHHHHHhhHHHHHHHHHcCC-CcEEEEEECCCchhh--------------hchhHHHH
Confidence            35899999999 99       999999999999999988865 699999999875432              26677899


Q ss_pred             HHhCCCccCCCCCCccEEEEEcCCCcE
Q 028030          165 KEWGVPADFFGSLPGRQTYILDKNGVV  191 (215)
Q Consensus       165 ~~~g~~~~~~g~~p~~~~~lid~~G~v  191 (215)
                      ..|++..     +|  +++++++.+++
T Consensus        86 ~~~~i~~-----~P--t~~~~~~~~~~  105 (123)
T 1wou_A           86 KNLKVTA-----VP--TLLKYGTPQKL  105 (123)
T ss_dssp             HHHCCCS-----SS--EEEETTSSCEE
T ss_pred             HHCCCCe-----eC--EEEEEcCCceE
Confidence            9999997     99  88888774444

>1nho_A Probable thioredoxin; beta sheet, alpha helix, oxidoreductase; NMR {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: c.47.1.1

Probab=99.20  E-value=4.3e-11  Score=79.35  Aligned_cols=79  Identities=20%  Similarity=0.261  Sum_probs=60.3

Q ss_pred             cEEEEEEcCCCChhhHHHHHHHHHHHHHHHHcCcEEEEEeCCCHHHHHHHHHHcCCCeEEEEcCChhHHHHhCCCccCCC
Q 028030           96 PVVVYFYPADETPGCTKQACAFRDSYEKFKKAGAEVIGISGDDSSSHKAFAKKYRLPYTLLSDEGNKVRKEWGVPADFFG  175 (215)
Q Consensus        96 ~~ll~f~~a~~C~~C~~~~~~l~~l~~~~~~~~v~vv~vs~d~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~g~~~~~~g  175 (215)
                      ++|++|| ++||++|+...|.++++++++++ ++.++.|+.|                     .+.++.+.||+..    
T Consensus         3 ~~vv~f~-~~~C~~C~~~~~~l~~~~~~~~~-~~~~~~vd~~---------------------~~~~~~~~~~v~~----   55 (85)
T 1nho_A            3 VNIEVFT-SPTCPYCPMAIEVVDEAKKEFGD-KIDVEKIDIM---------------------VDREKAIEYGLMA----   55 (85)
T ss_dssp             CCEEEES-CSSSCCSTTHHHHHHHHHHHHCS-SCCEEEECTT---------------------TCGGGGGGTCSSC----
T ss_pred             EEEEEEE-CCCCcchHHHHHHHHHHHHHhcC-CeEEEEEECC---------------------CCHHHHHhCCcee----
Confidence            5789999 99999999999999999999875 5899998874                     3457888999987    


Q ss_pred             CCCccEEEEEcCCCcEEEEEeCCCCCCccHHHHHH
Q 028030          176 SLPGRQTYILDKNGVVQLIYNNQFQPEKHIDETLK  210 (215)
Q Consensus       176 ~~p~~~~~lid~~G~v~~~~~g~~~~~~~~~~il~  210 (215)
                       +|  ++++   +|++  .+.|..+. +.+.+.++
T Consensus        56 -~P--t~~~---~G~~--~~~G~~~~-~~l~~~l~   81 (85)
T 1nho_A           56 -VP--AIAI---NGVV--RFVGAPSR-EELFEAIN   81 (85)
T ss_dssp             -SS--EEEE---TTTE--EEECSSCC-HHHHHHHH
T ss_pred             -eC--EEEE---CCEE--EEccCCCH-HHHHHHHH
Confidence             99  6655   8998  56664333 33444443

>2yj7_A LPBCA thioredoxin; oxidoreductase; 1.65A {Synthetic construct}

Probab=98.83  E-value=1.5e-12  Score=89.74  Aligned_cols=77  Identities=21%  Similarity=0.352  Sum_probs=62.9

Q ss_pred             CCCcEEEEEEcCCCChhhHHHHHHHHHHHHHHHHcCcEEEEEeCCCHHHHHHHHHHcCCCeEEEEcCChhHHHHhCCCcc
Q 028030           93 KGKPVVVYFYPADETPGCTKQACAFRDSYEKFKKAGAEVIGISGDDSSSHKAFAKKYRLPYTLLSDEGNKVRKEWGVPAD  172 (215)
Q Consensus        93 ~gk~~ll~f~~a~~C~~C~~~~~~l~~l~~~~~~~~v~vv~vs~d~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~g~~~~  172 (215)
                      .+|+++|.|| ++||++|+...+.+.++.+++++ ++.++.|+.|.                     +.++.+.|++.. 
T Consensus        18 ~~~~~~v~f~-~~~C~~C~~~~~~~~~~~~~~~~-~~~~~~v~~~~---------------------~~~~~~~~~v~~-   73 (106)
T 2yj7_A           18 SDKPVLVDFW-APWCGPCRMIAPIIEELAKEYEG-KVKVVKVNVDE---------------------NPNTAAQYGIRS-   73 (106)
Confidence            4789999999 99999999999999999998886 47888776543                     345677788886 


Q ss_pred             CCCCCCccEEEEEcCCCcEEEEEeCCCC
Q 028030          173 FFGSLPGRQTYILDKNGVVQLIYNNQFQ  200 (215)
Q Consensus       173 ~~g~~p~~~~~lid~~G~v~~~~~g~~~  200 (215)
                          +|  +++++ ++|+++..+.|..+
T Consensus        74 ----~P--t~~~~-~~g~~~~~~~g~~~   94 (106)
T 2yj7_A           74 ----IP--TLLLF-KNGQVVDRLVGAQP   94 (106)
Confidence                88  78888 89999988877543

>3q6o_A Sulfhydryl oxidase 1; protein disulfide isomerase, thioredoxin, thioredoxin fold, oxidoreductase, reductive methylation; HET: MLY; 2.05A {Homo sapiens}

Probab=99.16  E-value=1.2e-10  Score=92.91  Aligned_cols=69  Identities=14%  Similarity=0.261  Sum_probs=59.0

Q ss_pred             CCCcEEEEEEcCCCChhhHHHHHHHHHHHHHHHH--cCcEEEEEeCCCHHHHHHHHHHcCCCeEEEEcCChhHHHHhCCC
Q 028030           93 KGKPVVVYFYPADETPGCTKQACAFRDSYEKFKK--AGAEVIGISGDDSSSHKAFAKKYRLPYTLLSDEGNKVRKEWGVP  170 (215)
Q Consensus        93 ~gk~~ll~f~~a~~C~~C~~~~~~l~~l~~~~~~--~~v~vv~vs~d~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~g~~  170 (215)
                      .++++||+|| ++||++|+...|.+.++++++++  .++.++.|+++.                   |.+.++.+.|++.
T Consensus        29 ~~~~vlv~F~-a~wC~~C~~~~p~~~~l~~~~~~~~~~v~~~~vd~~~-------------------~~~~~l~~~~~v~   88 (244)
T 3q6o_A           29 SRSAWAVEFF-ASWCGHCIAFAPTWXALAEDVKAWRPALYLAALDCAE-------------------ETNSAVCRDFNIP   88 (244)
T ss_dssp             CSSEEEEEEE-CTTCHHHHHHHHHHHHHHHHTGGGTTTEEEEEEETTS-------------------TTTHHHHHHTTCC
T ss_pred             CCCeEEEEEE-CCcCHHHHHHHHHHHHHHHHHHhccCcEEEEEEeCCc-------------------hhhHHHHHHcCCC
Confidence            3589999999 99999999999999999999986  369999998743                   2356788999998


Q ss_pred             ccCCCCCCccEEEEEcCC
Q 028030          171 ADFFGSLPGRQTYILDKN  188 (215)
Q Consensus       171 ~~~~g~~p~~~~~lid~~  188 (215)
                      .     +|  +++++++.
T Consensus        89 ~-----~P--t~~~~~~g   99 (244)
T 3q6o_A           89 G-----FP--TVRFFXAF   99 (244)
T ss_dssp             S-----SS--EEEEECTT
T ss_pred             c-----cC--EEEEEeCC
Confidence            7     99  99999863

>1a8l_A Protein disulfide oxidoreductase; PDI, thioredoxin fold; 1.90A {Pyrococcus furiosus} SCOP: c.47.1.2 c.47.1.2 PDB: 1j08_A

Probab=99.16  E-value=2.2e-10  Score=90.06  Aligned_cols=77  Identities=14%  Similarity=0.117  Sum_probs=62.2

Q ss_pred             CCcEEEEEEcCCCChhhHHHHHHHHHHHHHHHH---cCcEEEEEeCCCHHHHHHHHHHcCCCeEEEEcCChhHHHHhCCC
Q 028030           94 GKPVVVYFYPADETPGCTKQACAFRDSYEKFKK---AGAEVIGISGDDSSSHKAFAKKYRLPYTLLSDEGNKVRKEWGVP  170 (215)
Q Consensus        94 gk~~ll~f~~a~~C~~C~~~~~~l~~l~~~~~~---~~v~vv~vs~d~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~g~~  170 (215)
                      +++++|+|| ++||++|+...|.+.++++++++   .++.++.|+.|                     .+..+...|++.
T Consensus       134 ~~~~~v~F~-a~wC~~C~~~~p~~~~l~~~~~~~~~~~v~~~~vd~~---------------------~~~~l~~~~~v~  191 (226)
T 1a8l_A          134 QDVRILVFV-TPTCPYCPLAVRMAHKFAIENTKAGKGKILGDMVEAI---------------------EYPEWADQYNVM  191 (226)
T ss_dssp             SCEEEEEEE-CSSCTTHHHHHHHHHHHHHHHHHTTCCCEEEEEEEGG---------------------GCHHHHHHTTCC
T ss_pred             CCcEEEEEe-CCCCCccHHHHHHHHHHHHhcccccCCcEEEEEEEcc---------------------cCHHHHHhCCCc
Confidence            444599999 99999999999999999999984   36888888754                     345678889998


Q ss_pred             ccCCCCCCccEEEEEcCCCcEEEEEeCCCC
Q 028030          171 ADFFGSLPGRQTYILDKNGVVQLIYNNQFQ  200 (215)
Q Consensus       171 ~~~~g~~p~~~~~lid~~G~v~~~~~g~~~  200 (215)
                      .     +|  +++++ ++|+++..+.|...
T Consensus       192 ~-----~P--t~~~~-~~G~~~~~~~G~~~  213 (226)
T 1a8l_A          192 A-----VP--KIVIQ-VNGEDRVEFEGAYP  213 (226)
T ss_dssp             S-----SC--EEEEE-ETTEEEEEEESCCC
T ss_pred             c-----cC--eEEEE-eCCceeEEEcCCCC
Confidence            7     99  65555 79999988888543

>1wmj_A Thioredoxin H-type; structural genomics, program for RICE genome research, oxidoreductase; NMR {Oryza sativa}

Probab=99.14  E-value=6.5e-12  Score=90.16  Aligned_cols=84  Identities=25%  Similarity=0.354  Sum_probs=66.2

Q ss_pred             CCCcEEEEEEcCCCChhhHHHHHHHHHHHHHHHHcCcEEEEEeCCCHHHHHHHHHHcCCCeEEEEcCChhHHHHhCCCcc
Q 028030           93 KGKPVVVYFYPADETPGCTKQACAFRDSYEKFKKAGAEVIGISGDDSSSHKAFAKKYRLPYTLLSDEGNKVRKEWGVPAD  172 (215)
Q Consensus        93 ~gk~~ll~f~~a~~C~~C~~~~~~l~~l~~~~~~~~v~vv~vs~d~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~g~~~~  172 (215)
                      .||++||+|| ++||++|+...+.|.++.++++  ++.++.|+.|                     .+.++.+.|++.. 
T Consensus        35 ~~~~~vv~f~-~~~C~~C~~~~~~l~~~~~~~~--~v~~~~v~~~---------------------~~~~~~~~~~v~~-   89 (130)
T 1wmj_A           35 AGKVVIIDFT-ASWCGPCRFIAPVFAEYAKKFP--GAVFLKVDVD---------------------ELKEVAEKYNVEA-   89 (130)
T ss_dssp             TTCBCBEECC-SSSCSCSSSSHHHHHHHHHHCT--TBCCEECCTT---------------------TSGGGHHHHTCCS-
T ss_pred             cCCEEEEEEE-CCCChhHHHHHHHHHHHHHHCC--CCEEEEEecc---------------------chHHHHHHcCCCc-
Confidence            5899999999 9999999999999999998886  5888888764                     3467888999987 


Q ss_pred             CCCCCCccEEEEEcCCCcEEEEEeCCCCCCccHHHHHH
Q 028030          173 FFGSLPGRQTYILDKNGVVQLIYNNQFQPEKHIDETLK  210 (215)
Q Consensus       173 ~~g~~p~~~~~lid~~G~v~~~~~g~~~~~~~~~~il~  210 (215)
                          +|  +++++ ++|+++..+.| .+.+. +.+.++
T Consensus        90 ----~P--t~~~~-~~g~~~~~~~g-~~~~~-l~~~l~  118 (130)
T 1wmj_A           90 ----MP--TFLFI-KDGAEADKVVG-ARKDD-LQNTIV  118 (130)
T ss_dssp             ----SC--CCCBC-TTTTCCBCCCT-TCTTT-HHHHHH
T ss_pred             ----cc--eEEEE-eCCeEEEEEeC-CCHHH-HHHHHH
Confidence                99  55544 89999888877 34443 444443

>1mek_A Protein disulfide isomerase; electron transport, redox-active center, endoplasmic reticulum; NMR {Homo sapiens} SCOP: c.47.1.2

Probab=99.13  E-value=2.1e-11  Score=85.88  Aligned_cols=87  Identities=21%  Similarity=0.352  Sum_probs=66.4

Q ss_pred             CCCcEEEEEEcCCCChhhHHHHHHHHHHHHHHHHc--CcEEEEEeCCCHHHHHHHHHHcCCCeEEEEcCChhHHHHhCCC
Q 028030           93 KGKPVVVYFYPADETPGCTKQACAFRDSYEKFKKA--GAEVIGISGDDSSSHKAFAKKYRLPYTLLSDEGNKVRKEWGVP  170 (215)
Q Consensus        93 ~gk~~ll~f~~a~~C~~C~~~~~~l~~l~~~~~~~--~v~vv~vs~d~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~g~~  170 (215)
                      ++|++||.|| ++||++|+...+.+.++++++++.  ++.++.|..+                     .+..+.+.|++.
T Consensus        23 ~~~~~lv~f~-~~~C~~C~~~~~~~~~~~~~~~~~~~~v~~~~vd~~---------------------~~~~~~~~~~v~   80 (120)
T 1mek_A           23 AHKYLLVEFY-APWCGHCKALAPEYAKAAGKLKAEGSEIRLAKVDAT---------------------EESDLAQQYGVR   80 (120)
T ss_dssp             HCSEEEEEEE-CSSCSTTSTTHHHHHHHHHTTTTTCCCCBCEEEETT---------------------TCCSSHHHHTCC
T ss_pred             cCCeEEEEEE-CCCCHHHHHhhHHHHHHHHHHhccCCcEEEEEEcCC---------------------CCHHHHHHCCCC
Confidence            5789999999 999999999999999999988754  4666666653                     345788899998


Q ss_pred             ccCCCCCCccEEEEEcCCCcEE--EEEeCCCCCCccHHHHHHHHh
Q 028030          171 ADFFGSLPGRQTYILDKNGVVQ--LIYNNQFQPEKHIDETLKFLQ  213 (215)
Q Consensus       171 ~~~~g~~p~~~~~lid~~G~v~--~~~~g~~~~~~~~~~il~~l~  213 (215)
                      .     +|  +++++ ++|+++  ..+.|..    ..+++.+.|+
T Consensus        81 ~-----~P--t~~~~-~~g~~~~~~~~~g~~----~~~~l~~~l~  113 (120)
T 1mek_A           81 G-----YP--TIKFF-RNGDTASPKEYTAGR----EADDIVNWLK  113 (120)
T ss_dssp             S-----SS--EEEEE-ESSCSSSCEECCCCS----SHHHHHHHHH
T ss_pred             c-----cc--EEEEE-eCCCcCCcccccCcc----CHHHHHHHHH
Confidence            7     89  88888 688866  6676643    2344555544

>1fo5_A Thioredoxin; disulfide oxidoreductase, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; NMR {Methanocaldococcus jannaschii} SCOP: c.47.1.1

Probab=99.13  E-value=7.6e-11  Score=78.15  Aligned_cols=69  Identities=23%  Similarity=0.303  Sum_probs=56.1

Q ss_pred             CcEEEEEEcCCCChhhHHHHHHHHHHHHHHHHcCcEEEEEeCCCHHHHHHHHHHcCCCeEEEEcCChhHHHHhCCCccCC
Q 028030           95 KPVVVYFYPADETPGCTKQACAFRDSYEKFKKAGAEVIGISGDDSSSHKAFAKKYRLPYTLLSDEGNKVRKEWGVPADFF  174 (215)
Q Consensus        95 k~~ll~f~~a~~C~~C~~~~~~l~~l~~~~~~~~v~vv~vs~d~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~g~~~~~~  174 (215)
                      .++|++|| ++||++|+...+.++++++++++ ++.++.|+.|                     .+.++.+.||+..   
T Consensus         3 ~~~vv~f~-~~~C~~C~~~~~~l~~~~~~~~~-~~~~~~vd~~---------------------~~~~~~~~~~v~~---   56 (85)
T 1fo5_A            3 KVKIELFT-SPMCPHCPAAKRVVEEVANEMPD-AVEVEYINVM---------------------ENPQKAMEYGIMA---   56 (85)
T ss_dssp             CEEEEEEE-CCCSSCCCTHHHHHHHHHHHCSS-SEEEEEEESS---------------------SSCCTTTSTTTCC---
T ss_pred             ceEEEEEe-CCCCCchHHHHHHHHHHHHHcCC-ceEEEEEECC---------------------CCHHHHHHCCCcc---
Confidence            57899999 99999999999999999988874 5899998874                     3446778889987   


Q ss_pred             CCCCccEEEEEcCCCcEEEEEeCC
Q 028030          175 GSLPGRQTYILDKNGVVQLIYNNQ  198 (215)
Q Consensus       175 g~~p~~~~~lid~~G~v~~~~~g~  198 (215)
                        +|  ++++   +|++  .+.|.
T Consensus        57 --~P--t~~~---~G~~--~~~G~   71 (85)
T 1fo5_A           57 --VP--TIVI---NGDV--EFIGA   71 (85)
T ss_dssp             --SS--EEEE---TTEE--ECCSS
T ss_pred             --cC--EEEE---CCEE--eeecC
Confidence              99  5555   8988  56664

>2es7_A Q8ZP25_salty, putative thiol-disulfide isomerase and thioredoxi; structural genomics, PSI, protein structure initiative; 2.80A {Salmonella typhimurium} SCOP: c.47.1.20 PDB: 2gzp_A 2jzt_A

Probab=99.10  E-value=5.9e-11  Score=87.44  Aligned_cols=75  Identities=13%  Similarity=0.240  Sum_probs=53.7

Q ss_pred             CCcEEEEEEcCCC--ChhhHHHHHHHHHHHHHHHHcCcE--EEEEeCCCHHHHHHHHHHcCCCeEEEEcCChhHHHHhCC
Q 028030           94 GKPVVVYFYPADE--TPGCTKQACAFRDSYEKFKKAGAE--VIGISGDDSSSHKAFAKKYRLPYTLLSDEGNKVRKEWGV  169 (215)
Q Consensus        94 gk~~ll~f~~a~~--C~~C~~~~~~l~~l~~~~~~~~v~--vv~vs~d~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~g~  169 (215)
                      ++.+||+|| +.|  |++|+...|.|.+++++| + ++.  ++.|+.|                     .+.+++..|++
T Consensus        34 ~~~~vv~f~-~~~~~C~~C~~l~P~l~~la~~~-~-~v~~~~~~Vd~d---------------------~~~~la~~~~V   89 (142)
T 2es7_A           34 VGDGVILLS-SDPRRTPEVSDNPVMIAELLREF-P-QFDWQVAVADLE---------------------QSEAIGDRFNV   89 (142)
T ss_dssp             CCSEEEEEC-CCSCC----CCHHHHHHHHHHTC-T-TSCCEEEEECHH---------------------HHHHHHHTTTC
T ss_pred             CCCEEEEEE-CCCCCCccHHHHHHHHHHHHHHh-c-ccceeEEEEECC---------------------CCHHHHHhcCC
Confidence            356788888 766  999999999999999998 4 477  8888754                     23568889999


Q ss_pred             CccCCCCCCccEEEEEcCCCcEEEEEeCCCC
Q 028030          170 PADFFGSLPGRQTYILDKNGVVQLIYNNQFQ  200 (215)
Q Consensus       170 ~~~~~g~~p~~~~~lid~~G~v~~~~~g~~~  200 (215)
                      ..     +|  +++++ ++|+++.++.|..+
T Consensus        90 ~~-----iP--T~~~f-k~G~~v~~~~G~~~  112 (142)
T 2es7_A           90 RR-----FP--ATLVF-TDGKLRGALSGIHP  112 (142)
T ss_dssp             CS-----SS--EEEEE-SCC----CEESCCC
T ss_pred             Cc-----CC--eEEEE-eCCEEEEEEeCCCC
Confidence            97     99  88888 89999999988543

>3ed3_A Protein disulfide-isomerase MPD1; thioredoxin-like domain, CXXC, endoplasmic reticulum, glycoprotein, redox-active center; 2.00A {Saccharomyces cerevisiae}

Probab=99.09  E-value=9e-10  Score=90.77  Aligned_cols=69  Identities=17%  Similarity=0.327  Sum_probs=58.6

Q ss_pred             CCCcEEEEEEcCCCChhhHHHHHHHHHHHHHHHHcCcEEEEEeCCCHHHHHHHHHHcCCCeEEEEcCChhHHHHhCCCcc
Q 028030           93 KGKPVVVYFYPADETPGCTKQACAFRDSYEKFKKAGAEVIGISGDDSSSHKAFAKKYRLPYTLLSDEGNKVRKEWGVPAD  172 (215)
Q Consensus        93 ~gk~~ll~f~~a~~C~~C~~~~~~l~~l~~~~~~~~v~vv~vs~d~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~g~~~~  172 (215)
                      .++++||+|| ++||++|+...|.+.++++++++. +.++.|.+|..                   .+.++...|++.. 
T Consensus        34 ~~~~vlV~F~-A~wC~~C~~~~p~~~~la~~~~~~-~~~~~v~~d~~-------------------~~~~l~~~~~I~~-   91 (298)
T 3ed3_A           34 TNYTSLVEFY-APWCGHCKKLSSTFRKAAKRLDGV-VQVAAVNCDLN-------------------KNKALCAKYDVNG-   91 (298)
T ss_dssp             SSSCEEEEEE-CTTCHHHHHHHHHHHHHHHHTTTT-SEEEEEETTST-------------------TTHHHHHHTTCCB-
T ss_pred             CCCeEEEEEE-CCCCHHHHHHHHHHHHHHHHccCC-cEEEEEEccCc-------------------cCHHHHHhCCCCc-
Confidence            4789999999 999999999999999999999864 89999988632                   3567888999997 


Q ss_pred             CCCCCCccEEEEEcCCCc
Q 028030          173 FFGSLPGRQTYILDKNGV  190 (215)
Q Consensus       173 ~~g~~p~~~~~lid~~G~  190 (215)
                          +|  +++++++ |+
T Consensus        92 ----~P--t~~~~~~-g~  102 (298)
T 3ed3_A           92 ----FP--TLMVFRP-PK  102 (298)
T ss_dssp             ----SS--EEEEEEC-CC
T ss_pred             ----cc--eEEEEEC-Cc
Confidence                99  8888875 54

>1a0r_P Phosducin, MEKA, PP33; transducin, beta-gamma, signal transduction, regulation, phosphorylation, G proteins, thioredoxin, vision; HET: FAR; 2.80A {Bos taurus} SCOP: c.47.1.6 PDB: 1b9y_C 1b9x_C

Probab=99.06  E-value=3.8e-10  Score=90.43  Aligned_cols=88  Identities=17%  Similarity=0.256  Sum_probs=66.6

Q ss_pred             CCCcEEEEEEcCCCChhhHHHHHHHHHHHHHHHHcCcEEEEEeCCCHHHHHHHHHHcCCCeEEEEcCChhHHHHhCCCcc
Q 028030           93 KGKPVVVYFYPADETPGCTKQACAFRDSYEKFKKAGAEVIGISGDDSSSHKAFAKKYRLPYTLLSDEGNKVRKEWGVPAD  172 (215)
Q Consensus        93 ~gk~~ll~f~~a~~C~~C~~~~~~l~~l~~~~~~~~v~vv~vs~d~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~g~~~~  172 (215)
                      +|+++||+|| ++||++|+...|.|.+++++|+  ++.|+.|..+.                      ..+...|++.. 
T Consensus       132 ~~k~VvV~Fy-a~wC~~Ck~l~p~l~~La~~~~--~v~f~kVd~d~----------------------~~l~~~~~I~~-  185 (245)
T 1a0r_P          132 KITTIVVHIY-EDGIKGCDALNSSLICLAAEYP--MVKFCKIKASN----------------------TGAGDRFSSDV-  185 (245)
T ss_dssp             TTCEEEEEEE-CTTSTTHHHHHHHHHHHHHHCT--TSEEEEEEHHH----------------------HCCTTSSCTTT-
T ss_pred             CCCEEEEEEE-CCCChHHHHHHHHHHHHHHHCC--CCEEEEEeCCc----------------------HHHHHHCCCCC-
Confidence            4789999999 9999999999999999999987  48999887532                      12455788886 


Q ss_pred             CCCCCCccEEEEEcCCCcEEEEEeCCCCC---CccHHHHHHHHh
Q 028030          173 FFGSLPGRQTYILDKNGVVQLIYNNQFQP---EKHIDETLKFLQ  213 (215)
Q Consensus       173 ~~g~~p~~~~~lid~~G~v~~~~~g~~~~---~~~~~~il~~l~  213 (215)
                          +|  +++++ ++|+++..+.|....   +-..+++.+.|+
T Consensus       186 ----~P--Tll~~-~~G~~v~~~vG~~~~~g~~~~~e~Le~~L~  222 (245)
T 1a0r_P          186 ----LP--TLLVY-KGGELLSNFISVTEQLAEEFFTGDVESFLN  222 (245)
T ss_dssp             ----CS--EEEEE-ETTEEEEEETTGGGGSCTTCCHHHHHHHHH
T ss_pred             ----CC--EEEEE-ECCEEEEEEeCCcccccccccHHHHHHHHH
Confidence                99  77666 599999998885321   123455555554

>2hls_A Protein disulfide oxidoreductase; thioredoxin fold; 1.93A {Aeropyrum pernix}

Probab=99.04  E-value=1.7e-09  Score=86.58  Aligned_cols=76  Identities=16%  Similarity=0.156  Sum_probs=60.0

Q ss_pred             CcCCCcEEEEEEcCCCChhhHHHHHHHHHHHHHHHH---cCcEEEEEeCCCHHHHHHHHHHcCCCeEEEEcCChhHHHHh
Q 028030           91 KFKGKPVVVYFYPADETPGCTKQACAFRDSYEKFKK---AGAEVIGISGDDSSSHKAFAKKYRLPYTLLSDEGNKVRKEW  167 (215)
Q Consensus        91 ~~~gk~~ll~f~~a~~C~~C~~~~~~l~~l~~~~~~---~~v~vv~vs~d~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~  167 (215)
                      +++|+++|++|| ++||++|+...|.+.+++.++++   .++.+..|..+                     .+.++...|
T Consensus       135 ~~~~~~~vv~F~-a~wC~~C~~~~p~l~~la~~~~~~~~~~v~~~~vd~~---------------------~~~~~~~~~  192 (243)
T 2hls_A          135 SLKGRVHIETII-TPSCPYCPYAVLLAHMFAYEAWKQGNPVILSEAVEAY---------------------ENPDIADKY  192 (243)
T ss_dssp             HCCSCEEEEEEE-CSSCSSHHHHHHHHHHHHHHHHHTTCCCEEEEEEETT---------------------TCHHHHHHT
T ss_pred             HcCCCcEEEEEE-CCCCCCcHHHHHHHHHHHHHcccccCCcEEEEEEECc---------------------cCHHHHHHc
Confidence            356888999999 99999999999999999999853   46888888754                     344677889


Q ss_pred             CCCccCCCCCCccEEEEEcCCCcEEEEEeCCCC
Q 028030          168 GVPADFFGSLPGRQTYILDKNGVVQLIYNNQFQ  200 (215)
Q Consensus       168 g~~~~~~g~~p~~~~~lid~~G~v~~~~~g~~~  200 (215)
                      ++..     +|  ++++   +|+++  +.|..+
T Consensus       193 ~V~~-----vP--t~~i---~G~~~--~~G~~~  213 (243)
T 2hls_A          193 GVMS-----VP--SIAI---NGYLV--FVGVPY  213 (243)
T ss_dssp             TCCS-----SS--EEEE---TTEEE--EESCCC
T ss_pred             CCee-----eC--eEEE---CCEEE--EeCCCC
Confidence            9987     99  6665   78875  666543

>3evi_A Phosducin-like protein 2; alpha beta, 3-layer(ABA) sandwich, unknown function; 2.70A {Homo sapiens}

Probab=99.03  E-value=1.3e-09  Score=77.59  Aligned_cols=85  Identities=15%  Similarity=0.215  Sum_probs=64.6

Q ss_pred             CCcEEEEEEcCCCChhhHHHHHHHHHHHHHHHHcCcEEEEEeCCCHHHHHHHHHHcCCCeEEEEcCChhHHHHhCCCccC
Q 028030           94 GKPVVVYFYPADETPGCTKQACAFRDSYEKFKKAGAEVIGISGDDSSSHKAFAKKYRLPYTLLSDEGNKVRKEWGVPADF  173 (215)
Q Consensus        94 gk~~ll~f~~a~~C~~C~~~~~~l~~l~~~~~~~~v~vv~vs~d~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~g~~~~~  173 (215)
                      ++++||+|| ++||++|+...|.|.+++++|+  ++.++-|..|..                        ...|++..  
T Consensus        23 ~~~vvv~F~-a~wc~~C~~~~p~l~~la~~~~--~v~f~kvd~d~~------------------------~~~~~v~~--   73 (118)
T 3evi_A           23 DVWVIIHLY-RSSIPMCLLVNQHLSLLARKFP--ETKFVKAIVNSC------------------------IQHYHDNC--   73 (118)
T ss_dssp             TCEEEEEEE-CTTSHHHHHHHHHHHHHHHHCT--TSEEEEEEGGGT------------------------STTCCGGG--
T ss_pred             CCeEEEEEe-CCCChHHHHHHHHHHHHHHHCC--CCEEEEEEhHHh------------------------HHHCCCCC--
Confidence            458999999 9999999999999999999986  489998876431                        25678887  


Q ss_pred             CCCCCccEEEEEcCCCcEEEEEeCCCCC---CccHHHHHHHHh
Q 028030          174 FGSLPGRQTYILDKNGVVQLIYNNQFQP---EKHIDETLKFLQ  213 (215)
Q Consensus       174 ~g~~p~~~~~lid~~G~v~~~~~g~~~~---~~~~~~il~~l~  213 (215)
                         +|  +++++ ++|+++.++.|....   +-..+++-..|.
T Consensus        74 ---~P--T~~~f-k~G~~v~~~~G~~~~gg~~~~~~~le~~L~  110 (118)
T 3evi_A           74 ---LP--TIFVY-KNGQIEAKFIGIIECGGINLKLEELEWKLA  110 (118)
T ss_dssp             ---CS--EEEEE-ETTEEEEEEESTTTTTCSSCCHHHHHHHHH
T ss_pred             ---CC--EEEEE-ECCEEEEEEeChhhhCCCCCCHHHHHHHHH
Confidence               99  65555 899999999885431   223455555444

>3kp8_A Vkorc1/thioredoxin domain protein; blood coagulation, disulfide formation, redox partner, oxidoreductase; 1.66A {Synechococcus SP}

Probab=99.00  E-value=3.6e-11  Score=84.18  Aligned_cols=77  Identities=19%  Similarity=0.302  Sum_probs=55.5

Q ss_pred             eeecCCcCCCcEEEEEEcCCCChhhHHHHHHHHHHHHHHHHcCcEEEEEeCCCHHHHHHHHHHcCCCeEEEEcCChhHHH
Q 028030           86 NVSLSKFKGKPVVVYFYPADETPGCTKQACAFRDSYEKFKKAGAEVIGISGDDSSSHKAFAKKYRLPYTLLSDEGNKVRK  165 (215)
Q Consensus        86 ~~~l~~~~gk~~ll~f~~a~~C~~C~~~~~~l~~l~~~~~~~~v~vv~vs~d~~~~~~~~~~~~~~~~~~~~d~~~~~~~  165 (215)
                      .+++++..||.+||+|| ++||++|+...|.|.+++++++     .|-+..|+.                 .+...++..
T Consensus         4 ~~~la~~~~k~~vV~F~-A~WC~~C~~~~p~~~~~a~~~~-----~v~~~~~~~-----------------~~~~~~l~~   60 (106)
T 3kp8_A            4 AVGLAAHLRQIGGTMYG-AYWCPHCQDQKELFGAAFDQVP-----YVECSPNGP-----------------GTPQAQECT   60 (106)
T ss_dssp             HHHHHHHHHHHTCEEEE-CTTCHHHHHHHHHHGGGGGGSC-----EEESCTTCT-----------------TSCCCHHHH
T ss_pred             hhHHHHhcCCCEEEEEE-CCCCHHHHHHHHHHHHHHHhCC-----EEEEecccc-----------------cchhHHHHH
Confidence            35666777899999999 9999999999999998875443     333332221                 024678999


Q ss_pred             HhCCCccCCCCCCccEEEEEcCCCcEEEEEeCC
Q 028030          166 EWGVPADFFGSLPGRQTYILDKNGVVQLIYNNQ  198 (215)
Q Consensus       166 ~~g~~~~~~g~~p~~~~~lid~~G~v~~~~~g~  198 (215)
                      .|++..     +|  + +++  +|++   +.|.
T Consensus        61 ~~~V~~-----~P--T-~~i--~G~~---~~G~   80 (106)
T 3kp8_A           61 EAGITS-----YP--T-WII--NGRT---YTGV   80 (106)
T ss_dssp             HTTCCS-----SS--E-EEE--TTEE---EESC
T ss_pred             HcCCeE-----eC--E-EEE--CCEE---ecCC
Confidence            999998     99  5 445  7874   5564

>3iv4_A Putative oxidoreductase; APC23140, meticillin-resistant staphylococcus aureus, oxidor thioredoxin fold, structural genomics, PSI-2; HET: MSE; 1.50A {Staphylococcus aureus subsp}

Probab=99.00  E-value=3.4e-09  Score=74.37  Aligned_cols=78  Identities=14%  Similarity=0.119  Sum_probs=60.3

Q ss_pred             CCcEEEEEEcCCCChhhHHHHHHHHHHHHHHHHcCcEEEEEeCCCHHHHHHHHHHcCCCeEEEEcCChhHHHHhCCCccC
Q 028030           94 GKPVVVYFYPADETPGCTKQACAFRDSYEKFKKAGAEVIGISGDDSSSHKAFAKKYRLPYTLLSDEGNKVRKEWGVPADF  173 (215)
Q Consensus        94 gk~~ll~f~~a~~C~~C~~~~~~l~~l~~~~~~~~v~vv~vs~d~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~g~~~~~  173 (215)
                      +++++|+|+ ++||++|+...|.++++.++   .++.++.|.+|....                 -...++..||+... 
T Consensus        24 ~~~vvi~kh-atwCgpc~~~~~~~e~~~~~---~~v~~~~vdVde~r~-----------------~Sn~IA~~~~V~h~-   81 (112)
T 3iv4_A           24 NKYVFVLKH-SETCPISANAYDQFNKFLYE---RDMDGYYLIVQQERD-----------------LSDYIAKKTNVKHE-   81 (112)
T ss_dssp             CSEEEEEEE-CTTCHHHHHHHHHHHHHHHH---HTCCEEEEEGGGGHH-----------------HHHHHHHHHTCCCC-
T ss_pred             CCCEEEEEE-CCcCHhHHHHHHHHHHHhcc---CCceEEEEEeecCch-----------------hhHHHHHHhCCccC-
Confidence            789999999 99999999999999999874   358888887654322                 12458889999842 


Q ss_pred             CCCCCccEEEEEcCCCcEEEEE-eCCC
Q 028030          174 FGSLPGRQTYILDKNGVVQLIY-NNQF  199 (215)
Q Consensus       174 ~g~~p~~~~~lid~~G~v~~~~-~g~~  199 (215)
                         .|  +++++ ++|++++.. .+.+
T Consensus        82 ---sP--q~il~-k~G~~v~~~SH~~I  102 (112)
T 3iv4_A           82 ---SP--QAFYF-VNGEMVWNRDHGDI  102 (112)
T ss_dssp             ---SS--EEEEE-ETTEEEEEEEGGGC
T ss_pred             ---CC--eEEEE-ECCEEEEEeecccc
Confidence               78  77777 899999884 4443

>1ilo_A Conserved hypothetical protein MTH895; beta-alpha-beta-alpha-beta-BETA-alpha motif, structural genomics, PSI; NMR {Methanothermobacterthermautotrophicus str} SCOP: c.47.1.1

Probab=98.99  E-value=1.5e-09  Score=70.54  Aligned_cols=62  Identities=19%  Similarity=0.304  Sum_probs=50.1

Q ss_pred             EEEEEEcCCCChhhHHHHHHHHHHHHHHHHcCcEEEEEeCCCHHHHHHHHHHcCCCeEEEEcCChhHHHHhCCCccCCCC
Q 028030           97 VVVYFYPADETPGCTKQACAFRDSYEKFKKAGAEVIGISGDDSSSHKAFAKKYRLPYTLLSDEGNKVRKEWGVPADFFGS  176 (215)
Q Consensus        97 ~ll~f~~a~~C~~C~~~~~~l~~l~~~~~~~~v~vv~vs~d~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~g~~~~~~g~  176 (215)
                      ..|+|| ++||++|+...+.+.++.++++. ++.++.|.                        +.++.+.||+..     
T Consensus         2 ~~v~f~-a~wC~~C~~~~~~l~~~~~~~~~-~~~~~~v~------------------------~~~~~~~~~v~~-----   50 (77)
T 1ilo_A            2 MKIQIY-GTGCANCQMLEKNAREAVKELGI-DAEFEKIK------------------------EMDQILEAGLTA-----   50 (77)
T ss_dssp             EEEEEE-CSSSSTTHHHHHHHHHHHHHTTC-CEEEEEEC------------------------SHHHHHHHTCSS-----
T ss_pred             cEEEEE-cCCChhHHHHHHHHHHHHHHcCC-ceEEEEec------------------------CHHHHHHCCCCc-----
Confidence            468999 99999999999999999888764 47777664                        457788899987     


Q ss_pred             CCccEEEEEcCCCcEEEE
Q 028030          177 LPGRQTYILDKNGVVQLI  194 (215)
Q Consensus       177 ~p~~~~~lid~~G~v~~~  194 (215)
                      +|  ++++   +|+++..
T Consensus        51 ~P--t~~~---~G~~~~~   63 (77)
T 1ilo_A           51 LP--GLAV---DGELKIM   63 (77)
T ss_dssp             SS--CEEE---TTEEEEC
T ss_pred             CC--EEEE---CCEEEEc
Confidence            99  5555   8998765

>3f8u_A Protein disulfide-isomerase A3ERP57; endoplasmic reticulum, glycoprotein, immunoglobulin domain, microsome, protein disulfide isomerase, thioredoxin-like FO like domain; HET: NAG; 2.60A {Homo sapiens} PDB: 2dmm_A 2alb_A

Probab=98.97  E-value=1e-09  Score=95.80  Aligned_cols=87  Identities=21%  Similarity=0.360  Sum_probs=67.2

Q ss_pred             CCCcEEEEEEcCCCChhhHHHHHHHHHHHHHHHHc-CcEEEEEeCCCHHHHHHHHHHcCCCeEEEEcCChhHHHHhCCCc
Q 028030           93 KGKPVVVYFYPADETPGCTKQACAFRDSYEKFKKA-GAEVIGISGDDSSSHKAFAKKYRLPYTLLSDEGNKVRKEWGVPA  171 (215)
Q Consensus        93 ~gk~~ll~f~~a~~C~~C~~~~~~l~~l~~~~~~~-~v~vv~vs~d~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~g~~~  171 (215)
                      .||++||+|| ++||++|+...|.+.++++++++. ++.++.|..+.                      .++...|++.+
T Consensus       369 ~~k~vlv~f~-a~wC~~C~~~~p~~~~l~~~~~~~~~v~~~~id~~~----------------------~~~~~~~~v~~  425 (481)
T 3f8u_A          369 ENKDVLIEFY-APWCGHCKNLEPKYKELGEKLSKDPNIVIAKMDATA----------------------NDVPSPYEVRG  425 (481)
T ss_dssp             TTCEEEEEEE-CTTBHHHHHHHHHHHHHHHHTTTCSSEEEEEEETTS----------------------SCCCTTCCCCS
T ss_pred             CCCcEEEEEe-cCcChhHHHhhHHHHHHHHHhccCCCEEEEEEECCc----------------------hhhHhhCCCcc
Confidence            4899999999 999999999999999999999875 67787776533                      14556788887


Q ss_pred             cCCCCCCccEEEEEcCCCcE-EEEEeCCCCCCccHHHHHHHHh
Q 028030          172 DFFGSLPGRQTYILDKNGVV-QLIYNNQFQPEKHIDETLKFLQ  213 (215)
Q Consensus       172 ~~~g~~p~~~~~lid~~G~v-~~~~~g~~~~~~~~~~il~~l~  213 (215)
                           +|  ++++++++|++ ...+.|..    ..+++++.|+
T Consensus       426 -----~P--t~~~~~~~~~~~~~~~~G~~----~~~~l~~~l~  457 (481)
T 3f8u_A          426 -----FP--TIYFSPANKKLNPKKYEGGR----ELSDFISYLQ  457 (481)
T ss_dssp             -----SS--EEEEECTTCTTSCEECCSCC----SHHHHHHHHH
T ss_pred             -----cC--EEEEEeCCCeEeeeEeCCCC----CHHHHHHHHH
Confidence                 89  99999888875 45666643    3455555554

>3idv_A Protein disulfide-isomerase A4; thioredoxin-like fold, disulfide bond, endoplasmic reticulum isomerase, redox-active center; 1.95A {Homo sapiens} PDB: 2dj2_A

Probab=98.96  E-value=2.6e-09  Score=84.45  Aligned_cols=86  Identities=17%  Similarity=0.282  Sum_probs=66.0

Q ss_pred             CCCcEEEEEEcCCCChhhHHHHHHHHHHHHHHHHcC--cEEEEEeCCCHHHHHHHHHHcCCCeEEEEcCChhHHHHhCCC
Q 028030           93 KGKPVVVYFYPADETPGCTKQACAFRDSYEKFKKAG--AEVIGISGDDSSSHKAFAKKYRLPYTLLSDEGNKVRKEWGVP  170 (215)
Q Consensus        93 ~gk~~ll~f~~a~~C~~C~~~~~~l~~l~~~~~~~~--v~vv~vs~d~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~g~~  170 (215)
                      .+++++|+|| ++||++|+...|.+.++++++++++  +.++.|..+.                     +.++.+.|++.
T Consensus       146 ~~~~~~v~f~-a~wC~~C~~~~p~~~~~a~~~~~~~~~v~~~~vd~~~---------------------~~~l~~~~~v~  203 (241)
T 3idv_A          146 DADIILVEFY-APWCGHCKKLAPEYEKAAKELSKRSPPIPLAKVDATA---------------------ETDLAKRFDVS  203 (241)
T ss_dssp             HCSEEEEEEE-CTTCTGGGGTHHHHHHHHHHHHTSSSCCCEEEEETTT---------------------CHHHHHHTTCC
T ss_pred             cCCeEEEEEE-CCCCHHHHHhHHHHHHHHHHHhccCCcEEEEEEECCC---------------------CHHHHHHcCCc
Confidence            4689999999 9999999999999999999998653  7888887643                     45688899998


Q ss_pred             ccCCCCCCccEEEEEcCCCcEEEEEeCCCCCCccHHHHHHHHh
Q 028030          171 ADFFGSLPGRQTYILDKNGVVQLIYNNQFQPEKHIDETLKFLQ  213 (215)
Q Consensus       171 ~~~~g~~p~~~~~lid~~G~v~~~~~g~~~~~~~~~~il~~l~  213 (215)
                      .     +|  ++++++ +|+.+. +.|..    ..+++++.|+
T Consensus       204 ~-----~P--t~~~~~-~g~~~~-~~g~~----~~~~l~~~l~  233 (241)
T 3idv_A          204 G-----YP--TLKIFR-KGRPYD-YNGPR----EKYGIVDYMI  233 (241)
T ss_dssp             S-----SS--EEEEEE-TTEEEE-CCSCC----SHHHHHHHHH
T ss_pred             c-----cC--EEEEEE-CCeEEE-ecCCC----CHHHHHHHHH
Confidence            7     89  777775 687765 66643    3344544443

>2trc_P Phosducin, MEKA, PP33; transducin, beta-gamma, signal transduction, regulation, phosphorylation, G proteins, thioredoxin, vision; 2.40A {Rattus norvegicus} SCOP: c.47.1.6

Probab=98.96  E-value=9.2e-10  Score=86.68  Aligned_cols=88  Identities=16%  Similarity=0.260  Sum_probs=66.6

Q ss_pred             CCCcEEEEEEcCCCChhhHHHHHHHHHHHHHHHHcCcEEEEEeCCCHHHHHHHHHHcCCCeEEEEcCChhHHHHhCCCcc
Q 028030           93 KGKPVVVYFYPADETPGCTKQACAFRDSYEKFKKAGAEVIGISGDDSSSHKAFAKKYRLPYTLLSDEGNKVRKEWGVPAD  172 (215)
Q Consensus        93 ~gk~~ll~f~~a~~C~~C~~~~~~l~~l~~~~~~~~v~vv~vs~d~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~g~~~~  172 (215)
                      +|+++||.|| ++||++|+...|.|.+++++|+  ++.|+.|..+                      +..+...|++.. 
T Consensus       119 ~~k~vvV~F~-a~wC~~C~~l~p~l~~la~~~~--~v~f~~vd~~----------------------~~~l~~~~~i~~-  172 (217)
T 2trc_P          119 KVTTIVVNIY-EDGVRGCDALNSSLECLAAEYP--MVKFCKIRAS----------------------NTGAGDRFSSDV-  172 (217)
T ss_dssp             TTCEEEEEEE-CTTSTTHHHHHHHHHHHHTTCT--TSEEEEEEHH----------------------HHTCSTTSCGGG-
T ss_pred             CCcEEEEEEE-CCCCccHHHHHHHHHHHHHHCC--CeEEEEEECC----------------------cHHHHHHCCCCC-
Confidence            4689999999 9999999999999999999885  6899988754                      123556788887 


Q ss_pred             CCCCCCccEEEEEcCCCcEEEEEeCCCCC---CccHHHHHHHHh
Q 028030          173 FFGSLPGRQTYILDKNGVVQLIYNNQFQP---EKHIDETLKFLQ  213 (215)
Q Consensus       173 ~~g~~p~~~~~lid~~G~v~~~~~g~~~~---~~~~~~il~~l~  213 (215)
                          +|  +++++ ++|+++..+.|....   +-..+++.+.|+
T Consensus       173 ----~P--Tl~~~-~~G~~v~~~~G~~~~~g~~~~~~~Le~~L~  209 (217)
T 2trc_P          173 ----LP--TLLVY-KGGELISNFISVAEQFAEDFFAADVESFLN  209 (217)
T ss_dssp             ----CS--EEEEE-ETTEEEEEETTGGGGSCSSCCHHHHHHHHH
T ss_pred             ----CC--EEEEE-ECCEEEEEEeCCcccCcccCCHHHHHHHHH
Confidence                89  77777 599999988884321   122355555554

>2dlx_A UBX domain-containing protein 7; UAS domain, protein KIAA0794, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: c.47.1.24

Probab=98.95  E-value=5.7e-09  Score=77.66  Aligned_cols=91  Identities=12%  Similarity=0.172  Sum_probs=63.0

Q ss_pred             CCCcEEEEEEcCCCChhhHHHHHHH---HHHHHHHHHcCcEEEEEeCCCHHHHHHHHHHcCCCeEEEEcCChhHHHHhCC
Q 028030           93 KGKPVVVYFYPADETPGCTKQACAF---RDSYEKFKKAGAEVIGISGDDSSSHKAFAKKYRLPYTLLSDEGNKVRKEWGV  169 (215)
Q Consensus        93 ~gk~~ll~f~~a~~C~~C~~~~~~l---~~l~~~~~~~~v~vv~vs~d~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~g~  169 (215)
                      .||+++|+|+ ++||..|+..-..+   .++.+.+.+ ++.+|-+..|+++.                   ..+.+.|++
T Consensus        41 ~~K~vlvd~~-a~wC~~C~~me~~vf~d~~V~~~l~~-~fv~v~~d~~~~~~-------------------~~l~~~y~v   99 (153)
T 2dlx_A           41 QNKWLMINIQ-NVQDFACQCLNRDVWSNEAVKNIIRE-HFIFWQVYHDSEEG-------------------QRYIQFYKL   99 (153)
T ss_dssp             HTCEEEEEEE-CSCTTTHHHHHHHTTTCHHHHHHHHH-TEEEEEEESSSHHH-------------------HHHHHHHTC
T ss_pred             cCCeEEEEEE-CCCCHhHHHHHHHhcCCHHHHHHHHc-CeEEEEEecCCHhH-------------------HHHHHHcCC
Confidence            4899999999 99999999776554   344444433 58888888876532                   345567888


Q ss_pred             CccCCCCCCccEEEEEcCC-CcEEEEEeCCCCCCccHHHHHHHH
Q 028030          170 PADFFGSLPGRQTYILDKN-GVVQLIYNNQFQPEKHIDETLKFL  212 (215)
Q Consensus       170 ~~~~~g~~p~~~~~lid~~-G~v~~~~~g~~~~~~~~~~il~~l  212 (215)
                      ..     +|  +++++|++ |+.+..+.| .+.++.++.+.+.+
T Consensus       100 ~~-----~P--~~~fld~~~G~~l~~~~g-~~~~~fl~~L~~~l  135 (153)
T 2dlx_A          100 GD-----FP--YVSILDPRTGQKLVEWHQ-LDVSSFLDQVTGFL  135 (153)
T ss_dssp             CS-----SS--EEEEECTTTCCCCEEESS-CCHHHHHHHHHHHH
T ss_pred             CC-----CC--EEEEEeCCCCcEeeecCC-CCHHHHHHHHHHHH
Confidence            76     88  99999998 876666655 44444444444444

>2r2j_A Thioredoxin domain-containing protein 4; CRFS motif, chaperone, endoplasmic reticulum, S response; 2.60A {Homo sapiens}

Probab=98.94  E-value=3.1e-09  Score=90.30  Aligned_cols=78  Identities=17%  Similarity=0.279  Sum_probs=63.0

Q ss_pred             CCCcEEEEEEcCCCChhhHHHHHHHHHHHHHHHH-----cCcEEEEEeCCCHHHHHHHHHHcCCCeEEEEcCChhHHHHh
Q 028030           93 KGKPVVVYFYPADETPGCTKQACAFRDSYEKFKK-----AGAEVIGISGDDSSSHKAFAKKYRLPYTLLSDEGNKVRKEW  167 (215)
Q Consensus        93 ~gk~~ll~f~~a~~C~~C~~~~~~l~~l~~~~~~-----~~v~vv~vs~d~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~  167 (215)
                      .++++||.|| ++||++|+...|.+.++++++++     .++.++.|..+                     .+..+.+.|
T Consensus        21 ~~~~vlV~F~-a~wC~~C~~~~p~~~~~a~~~~~~~~~~~~v~~~~Vd~~---------------------~~~~l~~~~   78 (382)
T 2r2j_A           21 NADVALVNFY-ADWCRFSQMLHPIFEEASDVIKEEFPNENQVVFARVDCD---------------------QHSDIAQRY   78 (382)
T ss_dssp             HCSEEEEEEE-CTTCHHHHHHHHHHHHHHHHHTTCC---CCEEEEEEETT---------------------TCHHHHHHT
T ss_pred             cCCeEEEEEE-CCCCHHHHHHHHHHHHHHHHHHhhcCCCCceEEEEEECC---------------------ccHHHHHhc
Confidence            4789999999 99999999999999999999953     24888888754                     456788899


Q ss_pred             CCCccCCCCCCccEEEEEcCCCcEEEE-EeCCCC
Q 028030          168 GVPADFFGSLPGRQTYILDKNGVVQLI-YNNQFQ  200 (215)
Q Consensus       168 g~~~~~~g~~p~~~~~lid~~G~v~~~-~~g~~~  200 (215)
                      ++.+     +|  +++++ ++|+++.. +.|..+
T Consensus        79 ~v~~-----~P--t~~~f-~~G~~~~~~~~G~~~  104 (382)
T 2r2j_A           79 RISK-----YP--TLKLF-RNGMMMKREYRGQRS  104 (382)
T ss_dssp             TCCE-----ES--EEEEE-ETTEEEEEECCSCCS
T ss_pred             CCCc-----CC--EEEEE-eCCcEeeeeecCcch
Confidence            9997     99  66655 68998764 777543

>3gyk_A 27KDA outer membrane protein; APC61738.2, silicibacter pomeroyi DSS-3, thioredoxin-like, oxidoreductase, structural genomics, PSI-2; HET: MSE; 1.76A {Silicibacter pomeroyi}

Probab=98.91  E-value=1.7e-09  Score=81.67  Aligned_cols=110  Identities=11%  Similarity=0.206  Sum_probs=71.4

Q ss_pred             CCeeecCCcCCCcEEEEEEcCCCChhhHHHHHHHHHHHHHHHHcCcEEEE--EeCC------------------------
Q 028030           84 GRNVSLSKFKGKPVVVYFYPADETPGCTKQACAFRDSYEKFKKAGAEVIG--ISGD------------------------  137 (215)
Q Consensus        84 g~~~~l~~~~gk~~ll~f~~a~~C~~C~~~~~~l~~l~~~~~~~~v~vv~--vs~d------------------------  137 (215)
                      +....+.+-.+|++|++|| ..|||+|....+.|.++.+++++  +.++.  +...                        
T Consensus        12 ~~~~~~G~~~a~v~i~~f~-d~~Cp~C~~~~~~l~~l~~~~~~--v~~~~~~~p~~~~~s~~aa~~~~~a~~~~~~~~~~   88 (175)
T 3gyk_A           12 PNAPVLGNPEGDVTVVEFF-DYNCPYCRRAMAEVQGLVDADPN--VRLVYREWPILGEGSDFAARAALAARQQGKYEAFH   88 (175)
T ss_dssp             TTSCEEECTTCSEEEEEEE-CTTCHHHHHHHHHHHHHHHHCTT--EEEEEEECCCSCHHHHHHHHHHHHGGGGTCHHHHH
T ss_pred             CCCCCcCCCCCCEEEEEEE-CCCCccHHHHHHHHHHHHHhCCC--EEEEEEeCCCCCCChHHHHHHHHHHHHHhHHHHHH
Confidence            3344566667899999999 99999999999999999888764  55554  4332                        


Q ss_pred             ----------CHHHHHHHHHHcCCCeEEE------------EcCChhHHHHhCCCccCCCCCCccEEEEEcCCCcEEEEE
Q 028030          138 ----------DSSSHKAFAKKYRLPYTLL------------SDEGNKVRKEWGVPADFFGSLPGRQTYILDKNGVVQLIY  195 (215)
Q Consensus       138 ----------~~~~~~~~~~~~~~~~~~~------------~d~~~~~~~~~g~~~~~~g~~p~~~~~lid~~G~v~~~~  195 (215)
                                +.+.+.+++++.|++...+            .+.+.+.+..+|+.+     +|   +++|  +|+   .+
T Consensus        89 ~~lf~~~~~~~~~~l~~~a~~~Gld~~~~~~~~~~~~~~~~v~~~~~~a~~~gv~g-----tP---t~~i--~g~---~~  155 (175)
T 3gyk_A           89 WALMGMSGKANETGVLRIAREVGLDTEQLQRDMEAPEVTAHIAQSMALAQKLGFNG-----TP---SFVV--EDA---LV  155 (175)
T ss_dssp             HHHHTCSSCCSHHHHHHHHHHTTCCHHHHHHHTTCHHHHHHHHHHHHHHHHHTCCS-----SS---EEEE--TTE---EE
T ss_pred             HHHHhcCCCCCHHHHHHHHHHcCCCHHHHHHHHhChHHHHHHHHHHHHHHHcCCcc-----CC---EEEE--CCE---Ee
Confidence                      2345556666667664322            233456778899987     89   4455  464   34


Q ss_pred             eCCCCCCccHHHHHH
Q 028030          196 NNQFQPEKHIDETLK  210 (215)
Q Consensus       196 ~g~~~~~~~~~~il~  210 (215)
                      .|..+. +.++++++
T Consensus       156 ~G~~~~-~~l~~~i~  169 (175)
T 3gyk_A          156 PGFVEQ-SQLQDAVD  169 (175)
T ss_dssp             CSCCCH-HHHHHHHH
T ss_pred             eCCCCH-HHHHHHHH
Confidence            454332 33444433

>2b5e_A Protein disulfide-isomerase; 2.40A {Saccharomyces cerevisiae} SCOP: c.47.1.2 c.47.1.2 c.47.1.2 c.47.1.2 PDB: 3boa_A

Probab=98.90  E-value=4e-09  Score=92.61  Aligned_cols=77  Identities=19%  Similarity=0.286  Sum_probs=64.1

Q ss_pred             CCCcEEEEEEcCCCChhhHHHHHHHHHHHHHHHHcCcEEEEEeCCCHHHHHHHHHHcCCCeEEEEcCChhHHHHhCCCcc
Q 028030           93 KGKPVVVYFYPADETPGCTKQACAFRDSYEKFKKAGAEVIGISGDDSSSHKAFAKKYRLPYTLLSDEGNKVRKEWGVPAD  172 (215)
Q Consensus        93 ~gk~~ll~f~~a~~C~~C~~~~~~l~~l~~~~~~~~v~vv~vs~d~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~g~~~~  172 (215)
                      .++++||.|| ++||++|+...|.+.++++++++.++.++.|..+                     .+..+.+.||+.+ 
T Consensus        30 ~~~~~lv~F~-a~wC~~C~~~~p~~~~~a~~~~~~~v~~~~vd~~---------------------~~~~l~~~~~v~~-   86 (504)
T 2b5e_A           30 SHDLVLAEFF-APWCGHCKNMAPEYVKAAETLVEKNITLAQIDCT---------------------ENQDLCMEHNIPG-   86 (504)
T ss_dssp             TCSEEEEEEE-CTTCHHHHHHHHHHHHHHHHTTTTTCEEEEEETT---------------------TCHHHHHHTTCCS-
T ss_pred             cCCeEEEEEE-CCCCHHHHHhHHHHHHHHHHhccCCeEEEEEECC---------------------CCHHHHHhcCCCc-
Confidence            4789999999 9999999999999999999998767999999854                     3456888999997 


Q ss_pred             CCCCCCccEEEEEcCCCcE--EEEEeCCC
Q 028030          173 FFGSLPGRQTYILDKNGVV--QLIYNNQF  199 (215)
Q Consensus       173 ~~g~~p~~~~~lid~~G~v--~~~~~g~~  199 (215)
                          +|  +++++. +|++  ...+.|..
T Consensus        87 ----~P--t~~~~~-~g~~~~~~~~~G~~  108 (504)
T 2b5e_A           87 ----FP--SLKIFK-NSDVNNSIDYEGPR  108 (504)
T ss_dssp             ----SS--EEEEEE-TTCTTCEEECCSCC
T ss_pred             ----CC--EEEEEe-CCccccceeecCCC
Confidence                99  888885 6775  66777753

>3ga4_A Dolichyl-diphosphooligosaccharide-protein glycosyltransferase subunit OST6; oxidoreductase, active site loop, redox state, membrane; HET: PG4; 1.30A {Saccharomyces cerevisiae} PDB: 3g7y_A 3g9b_A*

Probab=98.89  E-value=1.1e-08  Score=77.98  Aligned_cols=69  Identities=9%  Similarity=0.123  Sum_probs=55.0

Q ss_pred             CCCcEEEEEEcC-------CCChhhHHHHHHHHHHHHHHHH----cCcEEEEEeCCCHHHHHHHHHHcCCCeEEEEcCCh
Q 028030           93 KGKPVVVYFYPA-------DETPGCTKQACAFRDSYEKFKK----AGAEVIGISGDDSSSHKAFAKKYRLPYTLLSDEGN  161 (215)
Q Consensus        93 ~gk~~ll~f~~a-------~~C~~C~~~~~~l~~l~~~~~~----~~v~vv~vs~d~~~~~~~~~~~~~~~~~~~~d~~~  161 (215)
                      ++.++||+|| |       .||++|+...|.+++++++|..    ..+.|.-|.+                     |++.
T Consensus        36 ~~~~vvV~F~-A~~~~~~~~wCgpCk~l~P~~e~lA~~~~~~~~~~~v~f~kvD~---------------------d~~~   93 (178)
T 3ga4_A           36 PGYFNILYIT-MRGTNSNGMSCQLCHDFEKTYHAVADVIRSQAPQSLNLFFTVDV---------------------NEVP   93 (178)
T ss_dssp             TTCEEEEEEE-CCSBCTTSCBCHHHHHHHHHHHHHHHHHHHHCTTCCEEEEEEET---------------------TTCH
T ss_pred             CCCcEEEEEe-CCCCCCCCCCChhHHHHHHHHHHHHHHhhhccCCCCEEEEEEEC---------------------ccCH
Confidence            3568999999 7       4999999999999999999973    2377777765                     5567


Q ss_pred             hHHHHhCCCccCCCCCCccEEEEEcCCCc
Q 028030          162 KVRKEWGVPADFFGSLPGRQTYILDKNGV  190 (215)
Q Consensus       162 ~~~~~~g~~~~~~g~~p~~~~~lid~~G~  190 (215)
                      +++..||+..     +|  +++++-+.+.
T Consensus        94 ~la~~~~I~s-----iP--tl~~F~~g~~  115 (178)
T 3ga4_A           94 QLVKDLKLQN-----VP--HLVVYPPAES  115 (178)
T ss_dssp             HHHHHTTCCS-----SC--EEEEECCCCG
T ss_pred             HHHHHcCCCC-----CC--EEEEEcCCCC
Confidence            8889999997     89  7777755443

>1sji_A Calsequestrin 2, calsequestrin, cardiac muscle isoform; glycoprotein, calcium-binding, muscle protein, metal binding protein; 2.40A {Canis lupus familiaris} PDB: 2vaf_A

Probab=98.87  E-value=6.1e-09  Score=87.41  Aligned_cols=85  Identities=14%  Similarity=0.237  Sum_probs=64.7

Q ss_pred             CCCcEEEEEEcCCCChhhHHHHHH-------HHHHHHHHHHcCcEEEEEeCCCHHHHHHHHHHcCCCeEEEEcCChhHHH
Q 028030           93 KGKPVVVYFYPADETPGCTKQACA-------FRDSYEKFKKAGAEVIGISGDDSSSHKAFAKKYRLPYTLLSDEGNKVRK  165 (215)
Q Consensus        93 ~gk~~ll~f~~a~~C~~C~~~~~~-------l~~l~~~~~~~~v~vv~vs~d~~~~~~~~~~~~~~~~~~~~d~~~~~~~  165 (215)
                      .++++||+|| |+||+ |+..+|.       +.++++++++.++.++.|..+.                     +.++.+
T Consensus        27 ~~~~~lV~F~-a~wC~-c~~~~p~~~~~~~~~~~~a~~~~~~~v~~~~Vd~~~---------------------~~~l~~   83 (350)
T 1sji_A           27 KYDVLCLYYH-ESVSS-DKVAQKQFQLKEIVLELVAQVLEHKDIGFVMVDAKK---------------------EAKLAK   83 (350)
T ss_dssp             TCSEEEEEEE-CCSCS-SSTTSHHHHHHHHHHHHHHHHGGGSSEEEEEEETTT---------------------THHHHH
T ss_pred             hCCeEEEEEE-CCCCc-chhhCchhhhhhHHHHHHHHHHhhcCcEEEEEeCCC---------------------CHHHHH
Confidence            4689999999 99999 9888888       7888888877678898888643                     456888


Q ss_pred             HhCCCccCCCCCCccEEEEEcCCCcEEEEEeCCCCCCccHHHHHHHHh
Q 028030          166 EWGVPADFFGSLPGRQTYILDKNGVVQLIYNNQFQPEKHIDETLKFLQ  213 (215)
Q Consensus       166 ~~g~~~~~~g~~p~~~~~lid~~G~v~~~~~g~~~~~~~~~~il~~l~  213 (215)
                      .||+.+     +|  +++++ ++|++ ..+.|..+    .+++.+.++
T Consensus        84 ~~~v~~-----~P--t~~~~-~~g~~-~~~~G~~~----~~~l~~~i~  118 (350)
T 1sji_A           84 KLGFDE-----EG--SLYVL-KGDRT-IEFDGEFA----ADVLVEFLL  118 (350)
T ss_dssp             HHTCCS-----TT--EEEEE-ETTEE-EEECSCCC----HHHHHHHHH
T ss_pred             hcCCCc-----cc--eEEEE-ECCcE-EEecCCCC----HHHHHHHHH
Confidence            999997     99  88888 78884 46667432    344544443

>3uem_A Protein disulfide-isomerase; thioredoxin-like domain, chaper; 2.29A {Homo sapiens} PDB: 2k18_A 1x5c_A 1bjx_A 2bjx_A

Probab=98.87  E-value=4.9e-09  Score=88.09  Aligned_cols=87  Identities=22%  Similarity=0.292  Sum_probs=66.3

Q ss_pred             CCCcEEEEEEcCCCChhhHHHHHHHHHHHHHHHHc-CcEEEEEeCCCHHHHHHHHHHcCCCeEEEEcCChhHHHHhCCCc
Q 028030           93 KGKPVVVYFYPADETPGCTKQACAFRDSYEKFKKA-GAEVIGISGDDSSSHKAFAKKYRLPYTLLSDEGNKVRKEWGVPA  171 (215)
Q Consensus        93 ~gk~~ll~f~~a~~C~~C~~~~~~l~~l~~~~~~~-~v~vv~vs~d~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~g~~~  171 (215)
                      .+|+++|.|| ++||++|+...|.+.+++++++++ ++.++.|..+..                       ....|++..
T Consensus       266 ~~k~~lv~f~-a~wC~~C~~~~p~~~~la~~~~~~~~v~~~~vd~~~~-----------------------~~~~~~v~~  321 (361)
T 3uem_A          266 EKKNVFVEFY-APWCGHCKQLAPIWDKLGETYKDHENIVIAKMDSTAN-----------------------EVEAVKVHS  321 (361)
T ss_dssp             TTCEEEEEEE-CTTCHHHHHHHHHHHHHHHHTTTCSSEEEEEEETTTC-----------------------BCSSCCCCS
T ss_pred             CCCcEEEEEe-cCcCHhHHHHHHHHHHHHHHhccCCcEEEEEEECCcc-----------------------chhhcCCcc
Confidence            5799999999 999999999999999999999865 466666654321                       134678876


Q ss_pred             cCCCCCCccEEEEEcCC-CcEEEEEeCCCCCCccHHHHHHHHhc
Q 028030          172 DFFGSLPGRQTYILDKN-GVVQLIYNNQFQPEKHIDETLKFLQS  214 (215)
Q Consensus       172 ~~~g~~p~~~~~lid~~-G~v~~~~~g~~~~~~~~~~il~~l~~  214 (215)
                           +|  ++++++++ |+....+.|.    ...+++++.|++
T Consensus       322 -----~P--t~~~~~~~~~~~~~~~~G~----~~~~~l~~~l~~  354 (361)
T 3uem_A          322 -----FP--TLKFFPASADRTVIDYNGE----RTLDGFKKFLES  354 (361)
T ss_dssp             -----SS--EEEEECSSSSCCCEECCSC----SSHHHHHHHHTT
T ss_pred             -----cC--eEEEEECCCCcceeEecCC----CCHHHHHHHHHh
Confidence                 89  99999655 5666677773    446777777765

>3f8u_A Protein disulfide-isomerase A3ERP57; endoplasmic reticulum, glycoprotein, immunoglobulin domain, microsome, protein disulfide isomerase, thioredoxin-like FO like domain; HET: NAG; 2.60A {Homo sapiens} PDB: 2dmm_A 2alb_A

Probab=98.85  E-value=6e-09  Score=90.90  Aligned_cols=77  Identities=14%  Similarity=0.242  Sum_probs=64.1

Q ss_pred             CCCcEEEEEEcCCCChhhHHHHHHHHHHHHHHHHcCcEEEEEeCCCHHHHHHHHHHcCCCeEEEEcCChhHHHHhCCCcc
Q 028030           93 KGKPVVVYFYPADETPGCTKQACAFRDSYEKFKKAGAEVIGISGDDSSSHKAFAKKYRLPYTLLSDEGNKVRKEWGVPAD  172 (215)
Q Consensus        93 ~gk~~ll~f~~a~~C~~C~~~~~~l~~l~~~~~~~~v~vv~vs~d~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~g~~~~  172 (215)
                      .|+++||.|| ++||++|+...|.+.++++++++. +.++.|..+                     .+..+.+.||+.. 
T Consensus        20 ~~~~~lv~F~-a~wC~~C~~~~p~~~~~a~~~~~~-v~~~~vd~~---------------------~~~~l~~~~~v~~-   75 (481)
T 3f8u_A           20 SAGLMLVEFF-APWCGHAKRLAPEYEAAATRLKGI-VPLAKVDCT---------------------ANTNTCNKYGVSG-   75 (481)
T ss_dssp             SSSEEEEEEE-CTTCHHHHHHHHHHHHHHHHTTTT-CCEEEEETT---------------------TCHHHHHHTTCCE-
T ss_pred             CCCeEEEEEE-CCCCHHHHHhHHHHHHHHHHhcCc-eEEEEEECC---------------------CCHHHHHhcCCCC-
Confidence            3489999999 999999999999999999999875 888888764                     3457888999987 


Q ss_pred             CCCCCCccEEEEEcCCCcEEEEEeCCCC
Q 028030          173 FFGSLPGRQTYILDKNGVVQLIYNNQFQ  200 (215)
Q Consensus       173 ~~g~~p~~~~~lid~~G~v~~~~~g~~~  200 (215)
                          +|  +++++ ++|+++..+.|...
T Consensus        76 ----~P--tl~~~-~~g~~~~~~~G~~~   96 (481)
T 3f8u_A           76 ----YP--TLKIF-RDGEEAGAYDGPRT   96 (481)
T ss_dssp             ----ES--EEEEE-ETTEEEEECCSCSS
T ss_pred             ----CC--EEEEE-eCCceeeeecCccC
Confidence                89  66666 78988888888543

>3dml_A Putative uncharacterized protein; thioredoxin, oxidoreductase, sulfur oxidation, thiol- disulfide oxidoreductase; HET: MSE; 1.90A {Paracoccus denitrificans} PDB: 3d4t_A*

Probab=98.84  E-value=2.1e-09  Score=76.22  Aligned_cols=81  Identities=12%  Similarity=0.046  Sum_probs=55.1

Q ss_pred             CCCcEEEEEEcCCCChhhHHHHHHHHHHHHHHH-HcCcEEEEEeCCCHHHHHHHHHHcCCCeEEEEcCChhHHHHhCCCc
Q 028030           93 KGKPVVVYFYPADETPGCTKQACAFRDSYEKFK-KAGAEVIGISGDDSSSHKAFAKKYRLPYTLLSDEGNKVRKEWGVPA  171 (215)
Q Consensus        93 ~gk~~ll~f~~a~~C~~C~~~~~~l~~l~~~~~-~~~v~vv~vs~d~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~g~~~  171 (215)
                      +...+||+|| +.||++|+..-+.+...++... .+.+.++-|.+++.                   ....++..|++..
T Consensus        17 ~~~~~LV~F~-A~wC~~Ck~~~~~i~~~~~~~a~~~~~~l~~vdv~~~-------------------~~~~la~~~~V~g   76 (116)
T 3dml_A           17 KAELRLLMFE-QPGCLYCARWDAEIAPQYPLTDEGRAAPVQRLQMRDP-------------------LPPGLELARPVTF   76 (116)
T ss_dssp             --CEEEEEEE-CTTCHHHHHHHHHTTTTGGGSHHHHHSCEEEEETTSC-------------------CCTTCBCSSCCCS
T ss_pred             cCCCEEEEEE-CCCCHHHHHHHHHHHhhHHHhhhcccceEEEEECCCC-------------------CchhHHHHCCCCC
Confidence            4468999999 9999999988765554432211 11356666655432                   1235666778876


Q ss_pred             cCCCCCCccEEEEEcCCCcEEEEEeCCCCC
Q 028030          172 DFFGSLPGRQTYILDKNGVVQLIYNNQFQP  201 (215)
Q Consensus       172 ~~~g~~p~~~~~lid~~G~v~~~~~g~~~~  201 (215)
                           +|  ++++++ +|+.+.+..|....
T Consensus        77 -----~P--T~i~f~-~G~ev~Ri~G~~~~   98 (116)
T 3dml_A           77 -----TP--TFVLMA-GDVESGRLEGYPGE   98 (116)
T ss_dssp             -----SS--EEEEEE-TTEEEEEEECCCCH
T ss_pred             -----CC--EEEEEE-CCEEEeeecCCCCH
Confidence                 88  899998 99999999986543

>3apo_A DNAJ homolog subfamily C member 10; PDI family, thioredoxin, endoplasmic reticulum, oxidoreducta; 2.40A {Mus musculus}

Probab=98.84  E-value=1e-08  Score=94.56  Aligned_cols=79  Identities=14%  Similarity=0.204  Sum_probs=64.4

Q ss_pred             cCCcCCCcEEEEEEcCCCChhhHHHHHHHHHHHHHHHHcCcEEEEEeCCCHHHHHHHHHHcCCCeEEEEcCChhHHHHhC
Q 028030           89 LSKFKGKPVVVYFYPADETPGCTKQACAFRDSYEKFKKAGAEVIGISGDDSSSHKAFAKKYRLPYTLLSDEGNKVRKEWG  168 (215)
Q Consensus        89 l~~~~gk~~ll~f~~a~~C~~C~~~~~~l~~l~~~~~~~~v~vv~vs~d~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~g  168 (215)
                      +.++.|++++|.|| ++||++|+..+|.+.++++++++ ++.++.|+.++.                     ..+.+.||
T Consensus       450 ~~~~~~~~vlv~F~-a~wC~~c~~~~p~~~~~a~~~~~-~v~~~~vd~~~~---------------------~~~~~~~~  506 (780)
T 3apo_A          450 FPASDKEPWLVDFF-APWSPPSRALLPELRKASTLLYG-QLKVGTLDCTIH---------------------EGLCNMYN  506 (780)
T ss_dssp             SCTTCCSCEEEEEE-CTTCHHHHHHHHHHHHHHHHTTT-TCEEEEEETTTC---------------------HHHHHHTT
T ss_pred             HHHcCCCeEEEEEE-CCCCHHHHHHhHHHHHHHHHhcC-CeEEEEEeCCCC---------------------HHHHHHcC
Confidence            34457899999999 99999999999999999999985 499999987533                     34788899


Q ss_pred             CCccCCCCCCccEEEEEcCCCcEEEEEeCCC
Q 028030          169 VPADFFGSLPGRQTYILDKNGVVQLIYNNQF  199 (215)
Q Consensus       169 ~~~~~~g~~p~~~~~lid~~G~v~~~~~g~~  199 (215)
                      +..     +|  ++++++ +|++ ..+.|..
T Consensus       507 v~~-----~P--t~~~~~-~g~~-~~~~g~~  528 (780)
T 3apo_A          507 IQA-----YP--TTVVFN-QSSI-HEYEGHH  528 (780)
T ss_dssp             CCS-----SS--EEEEEE-TTEE-EEECSCS
T ss_pred             CCc-----CC--eEEEEc-CCce-eeecCcc
Confidence            987     89  888884 6877 5666754

>2ywm_A Glutaredoxin-like protein; redox protein, structural genomics, NPPSFA, national project protein structural and functional analyses; 2.30A {Aquifex aeolicus} PDB: 2ayt_A

Probab=98.83  E-value=1e-08  Score=80.62  Aligned_cols=72  Identities=15%  Similarity=0.068  Sum_probs=56.3

Q ss_pred             CCcEEEEEEcCCCChhhHHHHHHHHHHHHHHHHcCcEEEEEeCCCHHHHHHHHHHcCCCeEEEEcCChhHHHHhCCCccC
Q 028030           94 GKPVVVYFYPADETPGCTKQACAFRDSYEKFKKAGAEVIGISGDDSSSHKAFAKKYRLPYTLLSDEGNKVRKEWGVPADF  173 (215)
Q Consensus        94 gk~~ll~f~~a~~C~~C~~~~~~l~~l~~~~~~~~v~vv~vs~d~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~g~~~~~  173 (215)
                      ++++|++|| ++||++|+...|.+++++.+++  ++.++.|..+                     .+.++.+.|++..  
T Consensus       136 ~~~~~v~F~-a~wC~~C~~~~~~~~~~~~~~~--~v~~~~vd~~---------------------~~~~l~~~~~v~~--  189 (229)
T 2ywm_A          136 IPIEIWVFV-TTSCGYCPSAAVMAWDFALAND--YITSKVIDAS---------------------ENQDLAEQFQVVG--  189 (229)
T ss_dssp             SCEEEEEEE-CTTCTTHHHHHHHHHHHHHHCT--TEEEEEEEGG---------------------GCHHHHHHTTCCS--
T ss_pred             CCeEEEEEE-CCCCcchHHHHHHHHHHHHHCC--CeEEEEEECC---------------------CCHHHHHHcCCcc--
Confidence            455688999 9999999999999999998883  6888888754                     3456888999987  


Q ss_pred             CCCCCccEEEEEcCCCcEEEEEeCCCC
Q 028030          174 FGSLPGRQTYILDKNGVVQLIYNNQFQ  200 (215)
Q Consensus       174 ~g~~p~~~~~lid~~G~v~~~~~g~~~  200 (215)
                         +|  ++++   +|++ ..+.|..+
T Consensus       190 ---~P--t~~~---~G~~-~~~~G~~~  207 (229)
T 2ywm_A          190 ---VP--KIVI---NKGV-AEFVGAQP  207 (229)
T ss_dssp             ---SS--EEEE---GGGT-EEEESCCC
T ss_pred             ---cC--EEEE---CCEE-EEeeCCCC
Confidence               99  6665   7884 55777543

>3apo_A DNAJ homolog subfamily C member 10; PDI family, thioredoxin, endoplasmic reticulum, oxidoreducta; 2.40A {Mus musculus}

Probab=98.76  E-value=8.6e-09  Score=95.08  Aligned_cols=74  Identities=15%  Similarity=0.042  Sum_probs=61.9

Q ss_pred             CCCcEEEEEEcCCCChhhHHHHHHHHHHHHHHHHcCcEEEEEeCCCHHHHHHHHHHcCCCeEEEEcCChhHHHHhCCCcc
Q 028030           93 KGKPVVVYFYPADETPGCTKQACAFRDSYEKFKKAGAEVIGISGDDSSSHKAFAKKYRLPYTLLSDEGNKVRKEWGVPAD  172 (215)
Q Consensus        93 ~gk~~ll~f~~a~~C~~C~~~~~~l~~l~~~~~~~~v~vv~vs~d~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~g~~~~  172 (215)
                      .||++||+|| ++||++|+...|.+.++++++++ ++.++.|..+.                     ...+.+.||+.. 
T Consensus       674 ~~~~v~v~F~-a~wC~~C~~~~p~~~~la~~~~~-~~~~~~vd~~~---------------------~~~~~~~~~v~~-  729 (780)
T 3apo_A          674 GKTHWVVDFY-APWSGPSQNFAPEFELLARMIKG-KVRAGKVDCQA---------------------YPQTCQKAGIKA-  729 (780)
T ss_dssp             CSSCEEEEEE-CTTCHHHHHHHHHHHHHHHHHTT-TCEEEEEETTT---------------------CHHHHHHTTCCS-
T ss_pred             CCCeEEEEEE-CCCCHHHHHHHHHHHHHHHHhcC-CceEEEEECCC---------------------CHHHHHhcCCCc-
Confidence            4789999999 99999999999999999999976 48999988643                     446778899987 


Q ss_pred             CCCCCCccEEEEEcCCCcEEEEEeC
Q 028030          173 FFGSLPGRQTYILDKNGVVQLIYNN  197 (215)
Q Consensus       173 ~~g~~p~~~~~lid~~G~v~~~~~g  197 (215)
                          +|  +++++ ++|+++..+.|
T Consensus       730 ----~P--t~~~~-~~g~~~~~~~G  747 (780)
T 3apo_A          730 ----YP--SVKLY-QYERAKKSIWE  747 (780)
T ss_dssp             ----SS--EEEEE-EEETTTTEEEE
T ss_pred             ----CC--EEEEE-cCCCccccccC
Confidence                99  88888 78887766555

>3qcp_A QSOX from trypanosoma brucei (tbqsox); ERV fold, thioredoxin fold, sulfhydryl oxidase, oxidoreducta; HET: FAD; 2.30A {Trypanosoma brucei} PDB: 3qd9_A*

Probab=98.75  E-value=1.5e-08  Score=87.98  Aligned_cols=69  Identities=17%  Similarity=0.336  Sum_probs=57.2

Q ss_pred             CCCcEEEEEEcCCCChhhHHHHHHHHHHHHHHHHc-C------cEEEEEeCCCHHHHHHHHHHcCCCeEEEEcCChhHHH
Q 028030           93 KGKPVVVYFYPADETPGCTKQACAFRDSYEKFKKA-G------AEVIGISGDDSSSHKAFAKKYRLPYTLLSDEGNKVRK  165 (215)
Q Consensus        93 ~gk~~ll~f~~a~~C~~C~~~~~~l~~l~~~~~~~-~------v~vv~vs~d~~~~~~~~~~~~~~~~~~~~d~~~~~~~  165 (215)
                      .+|++||+|| ++||++|+...|.+.++++++++. +      +.|+.|+.|                     .+.++.+
T Consensus        41 ~~k~VlV~Fy-A~WC~pCk~~~P~l~~la~~~~~~~g~~~~~~v~f~~VD~d---------------------~~~~la~   98 (470)
T 3qcp_A           41 PLCPWIVLFY-NDGCGACRRYASTFSKFAGGLKVEHGKDALQIATAAAVNCA---------------------SEVDLCR   98 (470)
T ss_dssp             GGSCEEEEEE-CTTCHHHHHHHHHHHHHHHTSCCSSCSSGGGGCEEEEEETT---------------------TCHHHHH
T ss_pred             CCCeEEEEEE-CCCCHHHHHHHHHHHHHHHHHhhhcccccCceEEEEEEECC---------------------CCHHHHH
Confidence            3589999999 999999999999999999998743 2      888888864                     3456888


Q ss_pred             HhCCCccCCCCCCccEEEEEcCCCc
Q 028030          166 EWGVPADFFGSLPGRQTYILDKNGV  190 (215)
Q Consensus       166 ~~g~~~~~~g~~p~~~~~lid~~G~  190 (215)
                      .|++..     +|  ++++++++|.
T Consensus        99 ~y~V~~-----~P--Tlilf~~gg~  116 (470)
T 3qcp_A           99 KYDINF-----VP--RLFFFYPRDS  116 (470)
T ss_dssp             HTTCCS-----SC--EEEEEEESSC
T ss_pred             HcCCCc-----cC--eEEEEECCCc
Confidence            899987     89  8888876553

>3hd5_A Thiol:disulfide interchange protein DSBA; protein structure initiative II(PSI II), NYSGXRC, structural genomics; 2.35A {Bordetella parapertussis}

Probab=98.74  E-value=2.6e-08  Score=76.57  Aligned_cols=43  Identities=19%  Similarity=0.202  Sum_probs=37.9

Q ss_pred             CCCcEEEEEEcCCCChhhHHHHHHHHHHHHHHHHcCcEEEEEeCC
Q 028030           93 KGKPVVVYFYPADETPGCTKQACAFRDSYEKFKKAGAEVIGISGD  137 (215)
Q Consensus        93 ~gk~~ll~f~~a~~C~~C~~~~~~l~~l~~~~~~~~v~vv~vs~d  137 (215)
                      .|+++|+.|| ..||++|....+.+.++.+++++ ++.+..+.++
T Consensus        24 ~~~~~vv~f~-d~~Cp~C~~~~~~l~~l~~~~~~-~v~~~~~~~~   66 (195)
T 3hd5_A           24 PGKIEVLEFF-AYTCPHCAAIEPMVEDWAKTAPQ-DVVLKQVPIA   66 (195)
T ss_dssp             TTCEEEEEEE-CTTCHHHHHHHHHHHHHHHTCCT-TEEEEEEECC
T ss_pred             CCCeEEEEEE-CCCCccHHHhhHHHHHHHHHCCC-CeEEEEEecc
Confidence            4789999999 99999999999999999988876 5888887764

>1eej_A Thiol:disulfide interchange protein; oxidoreductase, protein disulfide isomerase, protein folding, redox protein, redox-active center; HET: MES; 1.90A {Escherichia coli} SCOP: c.47.1.9 d.17.3.1 PDB: 1tjd_A 1jzd_A 1jzo_A 1g0t_A 2iyj_A

Probab=98.69  E-value=1.9e-08  Score=78.91  Aligned_cols=106  Identities=18%  Similarity=0.153  Sum_probs=65.7

Q ss_pred             eecCCcCCCcEEEEEEcCCCChhhHHHHHHHHHHHHHHHHcCcEEEEEeCC----CH----------------HHHHHHH
Q 028030           87 VSLSKFKGKPVVVYFYPADETPGCTKQACAFRDSYEKFKKAGAEVIGISGD----DS----------------SSHKAFA  146 (215)
Q Consensus        87 ~~l~~~~gk~~ll~f~~a~~C~~C~~~~~~l~~l~~~~~~~~v~vv~vs~d----~~----------------~~~~~~~  146 (215)
                      +.+....||++|++|| ..|||+|++..+.|.++.+    .+++++.+...    .+                ..+.+++
T Consensus        79 ~~~g~~~~k~~vv~F~-d~~Cp~C~~~~~~l~~l~~----~~v~v~~~~~p~~~~~~~s~~~a~a~~~a~d~~~~~~~~~  153 (216)
T 1eej_A           79 IVYKAPQEKHVITVFT-DITCGYCHKLHEQMADYNA----LGITVRYLAFPRQGLDSDAEKEMKAIWCAKDKNKAFDDVM  153 (216)
T ss_dssp             EEECCTTCCEEEEEEE-CTTCHHHHHHHTTHHHHHH----TTEEEEEEECCTTCSSSHHHHHHHHHHTSSSHHHHHHHHH
T ss_pred             eeecCCCCCEEEEEEE-CCCCHHHHHHHHHHHHHHh----CCcEEEEEECCccCCCchHHHHHHHHHhccCHHHHHHHHH
Confidence            4455556899999999 9999999999999988754    26787766431    11                1233333


Q ss_pred             HHcCCCe---EEEEcCChhHHHHhCCCccCCCCCCccEEEEEcCCCcEEEEEeCCCCCCccHHHHHH
Q 028030          147 KKYRLPY---TLLSDEGNKVRKEWGVPADFFGSLPGRQTYILDKNGVVQLIYNNQFQPEKHIDETLK  210 (215)
Q Consensus       147 ~~~~~~~---~~~~d~~~~~~~~~g~~~~~~g~~p~~~~~lid~~G~v~~~~~g~~~~~~~~~~il~  210 (215)
                      ...++++   ....+.+.++...||+.+     +|  +++ + .||+.   ..|..+ .+.++++++
T Consensus       154 ~~~~~~~~~~~~~v~~~~~l~~~~gV~g-----tP--t~v-~-~dG~~---~~G~~~-~~~l~~~l~  207 (216)
T 1eej_A          154 AGKSVAPASCDVDIADHYALGVQLGVSG-----TP--AVV-L-SNGTL---VPGYQP-PKEMKEFLD  207 (216)
T ss_dssp             TTCCCCCCCCSCCHHHHHHHHHHHTCCS-----SS--EEE-C-TTSCE---EESCCC-HHHHHHHHH
T ss_pred             hCCCCChhHHHHHHHHHHHHHHHcCCCc-----cC--EEE-E-cCCeE---ecCCCC-HHHHHHHHH
Confidence            3333332   122345567889999998     89  654 4 35653   345332 233444443

>2b5e_A Protein disulfide-isomerase; 2.40A {Saccharomyces cerevisiae} SCOP: c.47.1.2 c.47.1.2 c.47.1.2 c.47.1.2 PDB: 3boa_A

Probab=98.65  E-value=3.6e-08  Score=86.53  Aligned_cols=85  Identities=18%  Similarity=0.376  Sum_probs=60.2

Q ss_pred             CCCcEEEEEEcCCCChhhHHHHHHHHHHHHHHHHc--CcEEEEEeCCCHHHHHHHHHHcCCCeEEEEcCChhHHHHhCCC
Q 028030           93 KGKPVVVYFYPADETPGCTKQACAFRDSYEKFKKA--GAEVIGISGDDSSSHKAFAKKYRLPYTLLSDEGNKVRKEWGVP  170 (215)
Q Consensus        93 ~gk~~ll~f~~a~~C~~C~~~~~~l~~l~~~~~~~--~v~vv~vs~d~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~g~~  170 (215)
                      .+|++||+|| ++||++|+...|.+.+++++++..  ++.++.|..+.                     + .... |++.
T Consensus       375 ~~k~vlv~F~-a~wC~~C~~~~p~~~~l~~~~~~~~~~v~~~~vd~~~---------------------~-~~~~-~~v~  430 (504)
T 2b5e_A          375 PKKDVLVLYY-APWCGHCKRLAPTYQELADTYANATSDVLIAKLDHTE---------------------N-DVRG-VVIE  430 (504)
T ss_dssp             TTCCEEEEEE-CTTCHHHHHHHHHHHHHHHHHHHHCSSCEEEEEEGGG---------------------C-CCSS-CCCS
T ss_pred             CCCCEEEEEE-CCCChhHHHHhHHHHHHHHHhhccCCcEEEEEecCCc---------------------c-cccc-CCce
Confidence            4799999999 999999999999999999999832  57777675421                     1 1223 7787


Q ss_pred             ccCCCCCCccEEEEEcCCCcE--EEEEeCCCCCCccHHHHHHHHh
Q 028030          171 ADFFGSLPGRQTYILDKNGVV--QLIYNNQFQPEKHIDETLKFLQ  213 (215)
Q Consensus       171 ~~~~g~~p~~~~~lid~~G~v--~~~~~g~~~~~~~~~~il~~l~  213 (215)
                      +     +|  +++++ ++|+.  ...+.|..    ..+++++.|+
T Consensus       431 ~-----~P--t~~~~-~~G~~~~~~~~~G~~----~~~~l~~~i~  463 (504)
T 2b5e_A          431 G-----YP--TIVLY-PGGKKSESVVYQGSR----SLDSLFDFIK  463 (504)
T ss_dssp             S-----SS--EEEEE-CCTTSCCCCBCCSCC----CHHHHHHHHH
T ss_pred             e-----cC--eEEEE-eCCceecceEecCCC----CHHHHHHHHH
Confidence            6     89  77777 78875  45566643    3444554443

>3h93_A Thiol:disulfide interchange protein DSBA; disulfide bond, redox-active center, transcription regulator; HET: MSE GOL; 1.50A {Pseudomonas aeruginosa PAO1} SCOP: c.47.1.0

Probab=98.63  E-value=2.7e-08  Score=76.30  Aligned_cols=42  Identities=19%  Similarity=0.207  Sum_probs=36.6

Q ss_pred             CCCcEEEEEEcCCCChhhHHHHHHHHHHHHHHHHcCcEEEEEeC
Q 028030           93 KGKPVVVYFYPADETPGCTKQACAFRDSYEKFKKAGAEVIGISG  136 (215)
Q Consensus        93 ~gk~~ll~f~~a~~C~~C~~~~~~l~~l~~~~~~~~v~vv~vs~  136 (215)
                      .++++|++|| ..|||+|....+.|.++.+++++ ++.+..+..
T Consensus        24 ~~~~~i~~f~-d~~Cp~C~~~~~~l~~l~~~~~~-~v~~~~~p~   65 (192)
T 3h93_A           24 PGKIEVVELF-WYGCPHCYAFEPTIVPWSEKLPA-DVHFVRLPA   65 (192)
T ss_dssp             TTSEEEEEEE-CTTCHHHHHHHHHHHHHHHTCCT-TEEEEEEEC
T ss_pred             CCCCEEEEEE-CCCChhHHHhhHHHHHHHHhCCC-CeEEEEEeh
Confidence            5789999999 99999999999999999988876 577776654

>3us3_A Calsequestrin-1; calcium-binding protein; 1.74A {Oryctolagus cuniculus} PDB: 1a8y_A 3v1w_A* 3trq_A* 3trp_A* 3uom_A

Probab=98.57  E-value=3.2e-07  Score=77.47  Aligned_cols=76  Identities=13%  Similarity=0.210  Sum_probs=57.5

Q ss_pred             CCCcEEEEEEcCCCChhhHHHH------HHHHHHHHHHHHcCcEEEEEeCCCHHHHHHHHHHcCCCeEEEEcCChhHHHH
Q 028030           93 KGKPVVVYFYPADETPGCTKQA------CAFRDSYEKFKKAGAEVIGISGDDSSSHKAFAKKYRLPYTLLSDEGNKVRKE  166 (215)
Q Consensus        93 ~gk~~ll~f~~a~~C~~C~~~~------~~l~~l~~~~~~~~v~vv~vs~d~~~~~~~~~~~~~~~~~~~~d~~~~~~~~  166 (215)
                      .++++||.|| |+||++|...-      |.+.++++.+++.++.+..|.++                     .+..+.+.
T Consensus        29 ~~~~vlV~Fy-ApWC~~~~~~~~l~~~~p~~e~~a~~~~~~~v~~~~Vd~~---------------------~~~~l~~~   86 (367)
T 3us3_A           29 KYEVLALLYH-EPPEDDKASQRQFEMEELILELAAQVLEDKGVGFGLVDSE---------------------KDAAVAKK   86 (367)
T ss_dssp             HCSEEEEEEE-CCCCSSHHHHHHHHHHHHHHHHHHHHHTTTTEEEEEEETT---------------------TTHHHHHH
T ss_pred             hCCeEEEEEE-CCCchhHHHhhhhccccHHHHHHHHHhhcCCceEEEEeCc---------------------ccHHHHHH
Confidence            3689999999 99999974222      47778888887667888888764                     44578899


Q ss_pred             hCCCccCCCCCCccEEEEEcCCCcEEEEEeCCC
Q 028030          167 WGVPADFFGSLPGRQTYILDKNGVVQLIYNNQF  199 (215)
Q Consensus       167 ~g~~~~~~g~~p~~~~~lid~~G~v~~~~~g~~  199 (215)
                      ||+.+     +|  +++++. +|+++ .+.|..
T Consensus        87 ~~V~~-----~P--Tl~~f~-~G~~~-~y~G~~  110 (367)
T 3us3_A           87 LGLTE-----ED--SIYVFK-EDEVI-EYDGEF  110 (367)
T ss_dssp             HTCCS-----TT--EEEEEE-TTEEE-ECCSCC
T ss_pred             cCCCc-----Cc--eEEEEE-CCcEE-EeCCCC
Confidence            99997     99  777775 78875 566643

>1a8l_A Protein disulfide oxidoreductase; PDI, thioredoxin fold; 1.90A {Pyrococcus furiosus} SCOP: c.47.1.2 c.47.1.2 PDB: 1j08_A

Probab=98.52  E-value=6.7e-07  Score=69.87  Aligned_cols=78  Identities=14%  Similarity=0.147  Sum_probs=57.6

Q ss_pred             cCCCcEEEEEEcCC-CChhhHHHHHHHHHHHHHHHHcCcEEEEEeCCCHHHHHHHHHHcCCCeEEEEcCChhHHHHhCCC
Q 028030           92 FKGKPVVVYFYPAD-ETPGCTKQACAFRDSYEKFKKAGAEVIGISGDDSSSHKAFAKKYRLPYTLLSDEGNKVRKEWGVP  170 (215)
Q Consensus        92 ~~gk~~ll~f~~a~-~C~~C~~~~~~l~~l~~~~~~~~v~vv~vs~d~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~g~~  170 (215)
                      ..++++|++|| +. ||++|+...+.+.++++. . .++.++.|..|+++                   +.++...||+.
T Consensus        20 ~~~~v~lv~f~-~~~~C~~C~~~~~~~~~la~~-~-~~v~~~~vd~~~~~-------------------~~~~~~~~~v~   77 (226)
T 1a8l_A           20 MVNPVKLIVFV-RKDHCQYCDQLKQLVQELSEL-T-DKLSYEIVDFDTPE-------------------GKELAKRYRID   77 (226)
T ss_dssp             CCSCEEEEEEE-CSSSCTTHHHHHHHHHHHHTT-C-TTEEEEEEETTSHH-------------------HHHHHHHTTCC
T ss_pred             cCCCeEEEEEe-cCCCCchhHHHHHHHHHHHhh-C-CceEEEEEeCCCcc-------------------cHHHHHHcCCC
Confidence            45677889999 99 999999999999998754 2 25888888876543                   24678889998


Q ss_pred             ccCCCCCCccEEEEEcCCCcEE-EEEeCCC
Q 028030          171 ADFFGSLPGRQTYILDKNGVVQ-LIYNNQF  199 (215)
Q Consensus       171 ~~~~g~~p~~~~~lid~~G~v~-~~~~g~~  199 (215)
                      .     +|  +++++ ++|+.. ..+.|..
T Consensus        78 ~-----~P--t~~~~-~~g~~~~~~~~G~~   99 (226)
T 1a8l_A           78 R-----AP--ATTIT-QDGKDFGVRYFGLP   99 (226)
T ss_dssp             S-----SS--EEEEE-ETTBCCSEEEESCC
T ss_pred             c-----Cc--eEEEE-cCCceeeEEEeccC
Confidence            7     89  77766 566532 4566643

>2djk_A PDI, protein disulfide-isomerase; thioredoxin fold; NMR {Humicola insolens} SCOP: c.47.1.2 PDB: 2kp2_A

Probab=98.52  E-value=2.1e-07  Score=67.24  Aligned_cols=74  Identities=11%  Similarity=0.113  Sum_probs=57.4

Q ss_pred             CCCcEEEEEEcCCCChhhHHHHHHHHHHHHHHHHcCcEEEEEeCCCHHHHHHHHHHcCCCeEEEEcCChhHHHHhCCCcc
Q 028030           93 KGKPVVVYFYPADETPGCTKQACAFRDSYEKFKKAGAEVIGISGDDSSSHKAFAKKYRLPYTLLSDEGNKVRKEWGVPAD  172 (215)
Q Consensus        93 ~gk~~ll~f~~a~~C~~C~~~~~~l~~l~~~~~~~~v~vv~vs~d~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~g~~~~  172 (215)
                      .+++++|+|| ++ |++|+...|.|.+++++|+++ +.|+.|+.                     |+...++..||+...
T Consensus        22 ~~~pv~v~f~-a~-~~~c~~~~p~l~~~A~~~~gk-~~f~~vd~---------------------d~~~~~a~~~gi~~~   77 (133)
T 2djk_A           22 AGIPLAYIFA-ET-AEERKELSDKLKPIAEAQRGV-INFGTIDA---------------------KAFGAHAGNLNLKTD   77 (133)
T ss_dssp             TTSCEEEEEC-SC-SSSHHHHHHHHHHHHHSSTTT-SEEEEECT---------------------TTTGGGTTTTTCCSS
T ss_pred             CCCCEEEEEe-cC-hhhHHHHHHHHHHHHHHhCCe-EEEEEEch---------------------HHhHHHHHHcCCCcc
Confidence            3578999999 88 789999999999999999865 88888875                     344567888999752


Q ss_pred             CCCCCCccEEEEEcC-CCcEEEEEe
Q 028030          173 FFGSLPGRQTYILDK-NGVVQLIYN  196 (215)
Q Consensus       173 ~~g~~p~~~~~lid~-~G~v~~~~~  196 (215)
                         .+|  ++++++. +|+. +...
T Consensus        78 ---~iP--tl~i~~~~~g~~-~~~~   96 (133)
T 2djk_A           78 ---KFP--AFAIQEVAKNQK-FPFD   96 (133)
T ss_dssp             ---SSS--EEEEECTTTCCB-CCCC
T ss_pred             ---cCC--EEEEEecCcCcc-cCCC
Confidence               278  8888864 5777 4443

>2znm_A Thiol:disulfide interchange protein DSBA; thioredoxin fold, DSBA-like, oxidoreductase; 2.30A {Neisseria meningitidis serogroup B} PDB: 3dvx_A

Probab=98.48  E-value=6.6e-08  Score=74.14  Aligned_cols=87  Identities=15%  Similarity=0.103  Sum_probs=63.9

Q ss_pred             CCCcEEEEEEcCCCChhhHHHHHHHHHHHHHHHHcCcEEEEEeCC-----------------------------------
Q 028030           93 KGKPVVVYFYPADETPGCTKQACAFRDSYEKFKKAGAEVIGISGD-----------------------------------  137 (215)
Q Consensus        93 ~gk~~ll~f~~a~~C~~C~~~~~~l~~l~~~~~~~~v~vv~vs~d-----------------------------------  137 (215)
                      .++++|++|| ..|||+|....+.|.++.++++. ++.+..+.+.                                   
T Consensus        21 ~~~~~i~~f~-d~~Cp~C~~~~~~l~~l~~~~~~-~v~~~~~p~~~~~~s~~aa~a~~aa~~~~~~~~~~~~lf~~~~~~   98 (195)
T 2znm_A           21 SGKIEVLEFF-GYFCVHCHHFDPLLLKLGKALPS-DAYLRTEHVVWQPEMLGLARMAAAVNLSGLKYQANPAVFKAVYEQ   98 (195)
T ss_dssp             SSSEEEEEEE-CTTSCCTTSSCHHHHHHHHHSCT-TEEEEEEECCCSGGGHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC
T ss_pred             CCCcEEEEEE-CCCChhHHHHhHHHHHHHHHCCC-ceEEEEeccccCcccHHHHHHHHHHHHcCcHHHHHHHHHHHHHHh
Confidence            4789999999 99999999999999999988865 4777777642                                   


Q ss_pred             -----CHHHHHHHHHHc-CCCeEEE------------EcCChhHHHHhCCCccCCCCCCccEEEEEcCCCcE
Q 028030          138 -----DSSSHKAFAKKY-RLPYTLL------------SDEGNKVRKEWGVPADFFGSLPGRQTYILDKNGVV  191 (215)
Q Consensus       138 -----~~~~~~~~~~~~-~~~~~~~------------~d~~~~~~~~~g~~~~~~g~~p~~~~~lid~~G~v  191 (215)
                           +.+.+.+++++. |++...+            .+.+.++...+|+.+     +|  + |+||  |+.
T Consensus        99 ~~~~~~~~~l~~~a~~~~Gld~~~~~~~~~~~~~~~~v~~~~~~a~~~gv~g-----tP--t-~vin--g~~  160 (195)
T 2znm_A           99 KIRLENRSVAGKWALSQKGFDGKKLMRAYDSPEAAAAALKMQKLTEQYRIDS-----TP--T-VIVG--GKY  160 (195)
T ss_dssp             SSCTTSHHHHHHHHHTCSSSCHHHHHHHHTSHHHHHHHHHHHHHHHHTTCCS-----SS--E-EEET--TTE
T ss_pred             CCCCCCHHHHHHHHHHcCCCCHHHHHHHhcCHHHHHHHHHHHHHHHHcCCCC-----CC--e-EEEC--CEE
Confidence                 345566677777 7764321            223455677889987     89  5 6774  664

>1v58_A Thiol:disulfide interchange protein DSBG; reduced DSBG, redox protein, protein disulfide isomerase, thioredoxin fold; 1.70A {Escherichia coli} SCOP: c.47.1.9 d.17.3.1 PDB: 1v57_A 2h0i_A 2h0h_A 2h0g_A 2iy2_A

Probab=98.43  E-value=9.7e-07  Score=70.30  Aligned_cols=100  Identities=12%  Similarity=0.093  Sum_probs=61.8

Q ss_pred             eecCCcCCCcEEEEEEcCCCChhhHHHHHHHHHHHHHHHHcCcEEEEEeCC----C-HHHH---------HHHHHH----
Q 028030           87 VSLSKFKGKPVVVYFYPADETPGCTKQACAFRDSYEKFKKAGAEVIGISGD----D-SSSH---------KAFAKK----  148 (215)
Q Consensus        87 ~~l~~~~gk~~ll~f~~a~~C~~C~~~~~~l~~l~~~~~~~~v~vv~vs~d----~-~~~~---------~~~~~~----  148 (215)
                      +.+..-.+|++|++|| ..|||+|++..+.+.++.++   .+++|+.+...    + ....         .++.+.    
T Consensus        90 i~~G~~~ak~~v~~F~-D~~Cp~C~~~~~~l~~~~~~---g~v~v~~~~~p~~~~~s~~~a~a~~~a~d~~~~~~~~~~~  165 (241)
T 1v58_A           90 LLDGKKDAPVIVYVFA-DPFCPYCKQFWQQARPWVDS---GKVQLRTLLVGVIKPESPATAAAILASKDPAKTWQQYEAS  165 (241)
T ss_dssp             EEESCTTCSEEEEEEE-CTTCHHHHHHHHHHHHHHHT---TSEEEEEEECCCSSTTHHHHHHHHHHSSSHHHHHHHHHHT
T ss_pred             ceECCCCCCeEEEEEE-CCCChhHHHHHHHHHHHHhC---CcEEEEEEECCcCCCcHHHHHHHHHHccCHHHHHHHHHHH
Confidence            4444446789999999 99999999999999887654   24777665431    1 1111         111111    


Q ss_pred             cC---CC--------eEEEEcCChhHHHHhCCCccCCCCCCccEEEEEcCCCcEEEEEeCC
Q 028030          149 YR---LP--------YTLLSDEGNKVRKEWGVPADFFGSLPGRQTYILDKNGVVQLIYNNQ  198 (215)
Q Consensus       149 ~~---~~--------~~~~~d~~~~~~~~~g~~~~~~g~~p~~~~~lid~~G~v~~~~~g~  198 (215)
                      +.   +.        .....+.+.++.+.+|+.+     +|  ++++.|.+|++ ....|.
T Consensus       166 ~~~~~l~~~~~~~~~~~~~v~~~~~l~~~~gv~g-----tP--t~vi~~~~G~~-~~~~G~  218 (241)
T 1v58_A          166 GGKLKLNVPANVSTEQMKVLSDNEKLMDDLGANV-----TP--AIYYMSKENTL-QQAVGL  218 (241)
T ss_dssp             TTCCCCCCCSSCCHHHHHHHHHHHHHHHHHTCCS-----SC--EEEEEETTTEE-EEEESS
T ss_pred             hccCCCCccccCCHHHHHHHHHHHHHHHHcCCCC-----CC--EEEEECCCCCE-EEecCC
Confidence            11   11        0001223456788899987     88  88888888976 455664

>2ywm_A Glutaredoxin-like protein; redox protein, structural genomics, NPPSFA, national project protein structural and functional analyses; 2.30A {Aquifex aeolicus} PDB: 2ayt_A

Probab=98.41  E-value=1.4e-06  Score=68.33  Aligned_cols=80  Identities=10%  Similarity=-0.016  Sum_probs=58.0

Q ss_pred             CCCcEEEEE----EcCCCChhhHHHHHHHHHHHHHHHH-cCcEEEEEeCCCHHHHHHHHHHcCCCeEEEEcCChhHHHHh
Q 028030           93 KGKPVVVYF----YPADETPGCTKQACAFRDSYEKFKK-AGAEVIGISGDDSSSHKAFAKKYRLPYTLLSDEGNKVRKEW  167 (215)
Q Consensus        93 ~gk~~ll~f----~~a~~C~~C~~~~~~l~~l~~~~~~-~~v~vv~vs~d~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~  167 (215)
                      .+.++|++|    | +.||++|+..+|.+.++++++.+ ..+.+..|..                     |.+.++...|
T Consensus        20 ~~~v~v~~~~~~~~-~~~C~~c~~~~~~~~~~a~~~~~~~~v~~~~vd~---------------------~~~~~l~~~~   77 (229)
T 2ywm_A           20 KEPVSIKLFSQAIG-CESCQTAEELLKETVEVIGEAVGQDKIKLDIYSP---------------------FTHKEETEKY   77 (229)
T ss_dssp             CSCEEEEEECCCTT-CGGGGHHHHHHHHHHHHHHHHHCTTTEEEEEECT---------------------TTCHHHHHHT
T ss_pred             cCCeEEEEEccCCC-CcccHHHHHHHHHHHHHHhccCCCCceEEEEecC---------------------cccHHHHHHc
Confidence            344455555    4 67899999999999999888843 2477777754                     4567889999


Q ss_pred             CCCccCCCCCCccEEEEEcCCCcEEEEEeCCCCCC
Q 028030          168 GVPADFFGSLPGRQTYILDKNGVVQLIYNNQFQPE  202 (215)
Q Consensus       168 g~~~~~~g~~p~~~~~lid~~G~v~~~~~g~~~~~  202 (215)
                      |+..     +|  ++++++ +|+....+.|....+
T Consensus        78 ~v~~-----~P--tl~~~~-~~~~~~~~~G~~~~~  104 (229)
T 2ywm_A           78 GVDR-----VP--TIVIEG-DKDYGIRYIGLPAGL  104 (229)
T ss_dssp             TCCB-----SS--EEEEES-SSCCCEEEESCCCTT
T ss_pred             CCCc-----Cc--EEEEEC-CCcccceecCCccHH
Confidence            9997     99  777775 666666777754333

>1z6m_A Conserved hypothetical protein; structural genomics, MCSG,, protein structure initiative, midwest center for structural genomics; HET: MSE; 1.30A {Enterococcus faecalis} SCOP: c.47.1.13

Probab=98.36  E-value=5e-06  Score=62.44  Aligned_cols=49  Identities=14%  Similarity=0.041  Sum_probs=39.3

Q ss_pred             eecCCcCCCcEEEEEEcCCCChhhHHHHHHHHHHHHHHHHc-CcEEEEEeC
Q 028030           87 VSLSKFKGKPVVVYFYPADETPGCTKQACAFRDSYEKFKKA-GAEVIGISG  136 (215)
Q Consensus        87 ~~l~~~~gk~~ll~f~~a~~C~~C~~~~~~l~~l~~~~~~~-~v~vv~vs~  136 (215)
                      +.+.+..++++|++|+ ..+||+|....+.+.++.++|.+. +++++....
T Consensus        20 ~~~G~~~a~v~i~~f~-D~~Cp~C~~~~~~~~~~~~~~~~~~~v~~~~~~~   69 (175)
T 1z6m_A           20 LHIGESNAPVKMIEFI-NVRCPYCRKWFEESEELLAQSVKSGKVERIIKLF   69 (175)
T ss_dssp             EEESCTTCSEEEEEEE-CTTCHHHHHHHHHHHHHHHHHHHTTSEEEEEEEC
T ss_pred             cccCCCCCCeEEEEEE-CCCCcchHHHHHHHHHHHHHHhhCCcEEEEEEeC
Confidence            4555557889999999 999999999999999998888433 478777654

>2rem_A Disulfide oxidoreductase; disulfide oxidoreductase, DSBA, thioredoxin fold, redox- active center; 1.90A {Xylella fastidiosa}

Probab=98.36  E-value=7.4e-07  Score=68.00  Aligned_cols=42  Identities=17%  Similarity=0.211  Sum_probs=35.5

Q ss_pred             CCCcEEEEEEcCCCChhhHHHHHHHHHHHHHHHHcCcEEEEEeC
Q 028030           93 KGKPVVVYFYPADETPGCTKQACAFRDSYEKFKKAGAEVIGISG  136 (215)
Q Consensus        93 ~gk~~ll~f~~a~~C~~C~~~~~~l~~l~~~~~~~~v~vv~vs~  136 (215)
                      .++++|++|| ..+||+|....+.+.++.++++. ++.+..+..
T Consensus        24 ~a~v~i~~f~-d~~Cp~C~~~~~~l~~l~~~~~~-~v~~~~~p~   65 (193)
T 2rem_A           24 AGKIEVVEIF-GYTCPHCAHFDSKLQAWGARQAK-DVRFTLVPA   65 (193)
T ss_dssp             TTCEEEEEEE-CTTCHHHHHHHHHHHHHHHTSCT-TEEEEEEEC
T ss_pred             CCCeEEEEEE-CCCChhHhhhhHHHHHHHHhcCC-ceEEEEeCc
Confidence            5788999999 99999999999999999888765 477776654

>1t3b_A Thiol:disulfide interchange protein DSBC; oxidoreductase, protein disulfide isomerase, protein folding, redox protein; 2.50A {Haemophilus influenzae} SCOP: c.47.1.9 d.17.3.1

Probab=98.34  E-value=4.7e-07  Score=70.67  Aligned_cols=38  Identities=18%  Similarity=0.187  Sum_probs=30.8

Q ss_pred             CCCcEEEEEEcCCCChhhHHHHHHHHHHHHHHHHcCcEEEEEe
Q 028030           93 KGKPVVVYFYPADETPGCTKQACAFRDSYEKFKKAGAEVIGIS  135 (215)
Q Consensus        93 ~gk~~ll~f~~a~~C~~C~~~~~~l~~l~~~~~~~~v~vv~vs  135 (215)
                      .+|++|++|| ..|||+|++..+.|.++.+    .|+++..+.
T Consensus        85 ~~k~~vv~F~-d~~Cp~C~~~~~~l~~~~~----~~v~v~~~~  122 (211)
T 1t3b_A           85 NEKHVVTVFM-DITCHYCHLLHQQLKEYND----LGITVRYLA  122 (211)
T ss_dssp             TCSEEEEEEE-CTTCHHHHHHHTTHHHHHH----TTEEEEEEE
T ss_pred             CCCEEEEEEE-CCCCHhHHHHHHHHHHHHh----CCcEEEEEE
Confidence            5789999999 9999999999999988643    257776543

>1ttz_A Conserved hypothetical protein; structural genomics, unknown function, PSI, protein structure initiative; 2.11A {Xanthomonas campestris} SCOP: c.47.1.1 PDB: 1xpv_A

Probab=98.33  E-value=5.4e-07  Score=60.42  Aligned_cols=58  Identities=12%  Similarity=0.172  Sum_probs=40.6

Q ss_pred             EEEEEcCCCChhhHHHHHHHHHHHHHHHHcCcEEEEEeCCCHHHHHHHHHHcCCCeEEEEcCChhHHHHhCCCccCCCCC
Q 028030           98 VVYFYPADETPGCTKQACAFRDSYEKFKKAGAEVIGISGDDSSSHKAFAKKYRLPYTLLSDEGNKVRKEWGVPADFFGSL  177 (215)
Q Consensus        98 ll~f~~a~~C~~C~~~~~~l~~l~~~~~~~~v~vv~vs~d~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~g~~~~~~g~~  177 (215)
                      |+.|| ++||++|+...+.|.++..++      +.-|++                     |.+.++...||+.      +
T Consensus         3 vv~f~-a~~C~~C~~~~~~L~~~~~~~------~~~vdi---------------------d~~~~l~~~~g~~------v   48 (87)
T 1ttz_A            3 LTLYQ-RDDCHLCDQAVEALAQARAGA------FFSVFI---------------------DDDAALESAYGLR------V   48 (87)
T ss_dssp             EEEEE-CSSCHHHHHHHHHHHHTTCCC------EEEEEC---------------------TTCHHHHHHHTTT------C
T ss_pred             EEEEE-CCCCchHHHHHHHHHHHHHhh------eEEEEC---------------------CCCHHHHHHhCCC------c
Confidence            78899 999999999988887763221      344544                     3445577778874      8


Q ss_pred             CccEEEEEcCCCcEEE
Q 028030          178 PGRQTYILDKNGVVQL  193 (215)
Q Consensus       178 p~~~~~lid~~G~v~~  193 (215)
                      |  .++ + .+|+.+.
T Consensus        49 P--tl~-~-~~G~~v~   60 (87)
T 1ttz_A           49 P--VLR-D-PMGRELD   60 (87)
T ss_dssp             S--EEE-C-TTCCEEE
T ss_pred             C--eEE-E-ECCEEEe
Confidence            9  444 4 7899874

>2fgx_A Putative thioredoxin; NET3, NESG, GFT-glutaredoxin-like, structural genomics, PSI, protein structure initiative; NMR {Nitrosomonas europaea}

Probab=98.33  E-value=2.4e-06  Score=59.47  Aligned_cols=63  Identities=13%  Similarity=0.127  Sum_probs=46.6

Q ss_pred             cEEEEEEcCCCChhhHHHHHHHHHHHHHHHHcCcEEEEEeCCCHHHHHHHHHHcCCCeEEEEcCChhHHHHhCCCccCCC
Q 028030           96 PVVVYFYPADETPGCTKQACAFRDSYEKFKKAGAEVIGISGDDSSSHKAFAKKYRLPYTLLSDEGNKVRKEWGVPADFFG  175 (215)
Q Consensus        96 ~~ll~f~~a~~C~~C~~~~~~l~~l~~~~~~~~v~vv~vs~d~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~g~~~~~~g  175 (215)
                      ..|+.|| +.||++|+...+.|.++.+++   ++.+.-|.+|+                     +.++...||+.     
T Consensus        30 ~~vv~y~-~~~C~~C~~a~~~L~~l~~e~---~i~~~~vDId~---------------------d~~l~~~ygv~-----   79 (107)
T 2fgx_A           30 RKLVVYG-REGCHLCEEMIASLRVLQKKS---WFELEVINIDG---------------------NEHLTRLYNDR-----   79 (107)
T ss_dssp             CCEEEEE-CSSCHHHHHHHHHHHHHHHHS---CCCCEEEETTT---------------------CHHHHHHSTTS-----
T ss_pred             cEEEEEe-CCCChhHHHHHHHHHHHHHhc---CCeEEEEECCC---------------------CHHHHHHhCCC-----
Confidence            5789999 999999999999999987664   47777776643                     33455667764     


Q ss_pred             CCCccEEEEEcCCCcEE
Q 028030          176 SLPGRQTYILDKNGVVQ  192 (215)
Q Consensus       176 ~~p~~~~~lid~~G~v~  192 (215)
                       +|  .++++ .+|+++
T Consensus        80 -VP--~l~~~-~dG~~v   92 (107)
T 2fgx_A           80 -VP--VLFAV-NEDKEL   92 (107)
T ss_dssp             -CS--EEEET-TTTEEE
T ss_pred             -Cc--eEEEE-ECCEEE
Confidence             88  54434 688886

>2e7p_A Glutaredoxin; thioredoxin fold, poplar, electron transport; HET: GSH; 2.10A {Populus tremula x populus tremuloides} PDB: 1z7p_A 1z7r_A

Probab=98.32  E-value=5.1e-07  Score=63.14  Aligned_cols=71  Identities=15%  Similarity=0.152  Sum_probs=47.4

Q ss_pred             CCCcEEEEEEcCCCChhhHHHHHHHHHHHHHHHHcCcEEEEEeCCCH-HHHHHHHHHcCCCeEEEEcCChhHHHHhCCCc
Q 028030           93 KGKPVVVYFYPADETPGCTKQACAFRDSYEKFKKAGAEVIGISGDDS-SSHKAFAKKYRLPYTLLSDEGNKVRKEWGVPA  171 (215)
Q Consensus        93 ~gk~~ll~f~~a~~C~~C~~~~~~l~~l~~~~~~~~v~vv~vs~d~~-~~~~~~~~~~~~~~~~~~d~~~~~~~~~g~~~  171 (215)
                      +++++++ || ++||++|+...+.|.++..     .+.++.|..+.. +..                 ...+...||+..
T Consensus        18 ~~~~vv~-f~-a~~C~~C~~~~~~l~~~~~-----~~~~v~v~~~~~~~~~-----------------~~~l~~~~~v~~   73 (116)
T 2e7p_A           18 SSAPVVV-FS-KTYCGYCNRVKQLLTQVGA-----SYKVVELDELSDGSQL-----------------QSALAHWTGRGT   73 (116)
T ss_dssp             TSSSEEE-EE-CTTCHHHHHHHHHHHHHTC-----CCEEEEGGGSTTHHHH-----------------HHHHHHHHSCCS
T ss_pred             cCCCEEE-EE-CCCChhHHHHHHHHHHcCC-----CeEEEEccCCCChHHH-----------------HHHHHHHhCCCC
Confidence            4566666 99 9999999999998887732     245555544332 111                 135777889876


Q ss_pred             cCCCCCCccEEEEEcCCCcEEEEEeC
Q 028030          172 DFFGSLPGRQTYILDKNGVVQLIYNN  197 (215)
Q Consensus       172 ~~~g~~p~~~~~lid~~G~v~~~~~g  197 (215)
                           +|  ++ ++  +|+++..+.+
T Consensus        74 -----~P--t~-~~--~g~~v~~~~~   89 (116)
T 2e7p_A           74 -----VP--NV-FI--GGKQIGGCDT   89 (116)
T ss_dssp             -----SC--EE-EE--TTEEEECHHH
T ss_pred             -----cC--EE-EE--CCEEECChHH
Confidence                 89  66 44  6888776554

>1hyu_A AHPF, alkyl hydroperoxide reductase subunit F; thiol-thiolate hydrogen bond, nucleotide binding fold, thior reductase, thioredoxin; HET: FAD; 2.00A {Salmonella typhimurium} SCOP: c.3.1.5 c.3.1.5 c.47.1.2 c.47.1.2 PDB: 1zyn_A 1zyp_A

Probab=98.21  E-value=8.6e-06  Score=71.82  Aligned_cols=68  Identities=16%  Similarity=0.123  Sum_probs=54.5

Q ss_pred             CCCcEEEEEEcCCCChhhHHHHHHHHHHHHHHHHcCcEEEEEeCCCHHHHHHHHHHcCCCeEEEEcCChhHHHHhCCCcc
Q 028030           93 KGKPVVVYFYPADETPGCTKQACAFRDSYEKFKKAGAEVIGISGDDSSSHKAFAKKYRLPYTLLSDEGNKVRKEWGVPAD  172 (215)
Q Consensus        93 ~gk~~ll~f~~a~~C~~C~~~~~~l~~l~~~~~~~~v~vv~vs~d~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~g~~~~  172 (215)
                      .++..+++|| +.||++|+...|.|+++..+++  ++.+..|..|                     ...++...|++.. 
T Consensus       116 ~~~~~i~~f~-a~~C~~C~~~~~~l~~~a~~~~--~v~~~~vd~~---------------------~~~~~~~~~~i~s-  170 (521)
T 1hyu_A          116 DGDFEFETYY-SLSCHNCPDVVQALNLMAVLNP--RIKHTAIDGG---------------------TFQNEITERNVMG-  170 (521)
T ss_dssp             CSCEEEEEEE-CTTCSSHHHHHHHHHHHHHHCT--TEEEEEEETT---------------------TCHHHHHHTTCCS-
T ss_pred             CCCcceEEEE-CCCCcCcHHHHHHHHHHHhHcC--ceEEEEEech---------------------hhHHHHHHhCCCc-
Confidence            3567899999 9999999999999999988876  5888777653                     4557888899987 


Q ss_pred             CCCCCCccEEEEEcCCCcEEEE
Q 028030          173 FFGSLPGRQTYILDKNGVVQLI  194 (215)
Q Consensus       173 ~~g~~p~~~~~lid~~G~v~~~  194 (215)
                          +|  ++++   +|+.+..
T Consensus       171 ----vP--t~~i---~g~~~~~  183 (521)
T 1hyu_A          171 ----VP--AVFV---NGKEFGQ  183 (521)
T ss_dssp             ----SS--EEEE---TTEEEEE
T ss_pred             ----cC--EEEE---CCEEEec
Confidence                99  6655   8888754

>2qc7_A ERP31, ERP28, endoplasmic reticulum protein ERP29; B domain (residues 33-153), D domain (residues 154-261), CHA; 2.90A {Homo sapiens} PDB: 1g7e_A 1g7d_A

Probab=98.15  E-value=1e-05  Score=64.33  Aligned_cols=88  Identities=16%  Similarity=0.247  Sum_probs=61.5

Q ss_pred             CCCcEEEEEEcC--CCChhhHHHHHHHHHHHHHHHH-cCcEEEEEeCCCHHHHHHHHHHcCCCeEEEEcCChhHHHHhCC
Q 028030           93 KGKPVVVYFYPA--DETPGCTKQACAFRDSYEKFKK-AGAEVIGISGDDSSSHKAFAKKYRLPYTLLSDEGNKVRKEWGV  169 (215)
Q Consensus        93 ~gk~~ll~f~~a--~~C~~C~~~~~~l~~l~~~~~~-~~v~vv~vs~d~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~g~  169 (215)
                      .++++||.|| +  +||+    ..|.+.++++++.+ .++.|..|.+|+..                .+.+.++...|++
T Consensus        21 ~~~~vlV~Fy-A~~pWCg----l~P~~e~lA~~~~~~~~v~~akVDvd~~g----------------~~~~~~l~~~~~V   79 (240)
T 2qc7_A           21 KSKFVLVKFD-TQYPYGE----KQDEFKRLAENSASSDDLLVAEVGISDYG----------------DKLNMELSEKYKL   79 (240)
T ss_dssp             GCSEEEEEEC-CSSCCSH----HHHHHHHHHHHHTTCTTEEEEEECCCCSS----------------SCCSHHHHHHTTC
T ss_pred             CCCCEEEEEe-CCCCCCc----chHHHHHHHHHhcCCCCeEEEEEeCCccc----------------chhhHHHHHHcCC
Confidence            3578999999 9  9998    88999999998874 35888888765410                0135678899999


Q ss_pred             C--ccCCCCCCccEEEEEcCCCc--EEEEEeCCCCCCccHHHHHHHHh
Q 028030          170 P--ADFFGSLPGRQTYILDKNGV--VQLIYNNQFQPEKHIDETLKFLQ  213 (215)
Q Consensus       170 ~--~~~~g~~p~~~~~lid~~G~--v~~~~~g~~~~~~~~~~il~~l~  213 (215)
                      .  .     +|  +++++ ++|+  ....+.|..    ..+++.+.|+
T Consensus        80 ~~~~-----~P--Tl~~f-~~G~~~~~~~y~G~~----~~~~L~~fi~  115 (240)
T 2qc7_A           80 DKES-----YP--VFYLF-RDGDFENPVPYTGAV----KVGAIQRWLK  115 (240)
T ss_dssp             CGGG-----CS--EEEEE-ETTCSSCCEECCSCS----CHHHHHHHHH
T ss_pred             CCCC-----CC--EEEEE-eCCCcCcceeecCCC----CHHHHHHHHH
Confidence            9  7     99  77777 5676  344566643    3345555544

>2k8s_A Thioredoxin; dimer, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; NMR {Nitrosomonas europaea}

Probab=98.14  E-value=2.1e-06  Score=56.18  Aligned_cols=65  Identities=15%  Similarity=0.183  Sum_probs=44.5

Q ss_pred             EEEEEEcCCCChhhHHHHHHHHHHHHHHHHcCcEEEEEeCCCHHHHHHHHHHcCCCeEEEEcCChhHHHHhCCCccCCCC
Q 028030           97 VVVYFYPADETPGCTKQACAFRDSYEKFKKAGAEVIGISGDDSSSHKAFAKKYRLPYTLLSDEGNKVRKEWGVPADFFGS  176 (215)
Q Consensus        97 ~ll~f~~a~~C~~C~~~~~~l~~l~~~~~~~~v~vv~vs~d~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~g~~~~~~g~  176 (215)
                      .++.|| ++||++|+...+.|.++.+++   ++.+..+.+|..                  ....++.+.||+..     
T Consensus         3 ~~~~f~-~~~C~~C~~~~~~l~~~~~~~---~~~~~~~~v~~~------------------~~~~~~~~~~gv~~-----   55 (80)
T 2k8s_A            3 SKAIFY-HAGCPVCVSAEQAVANAIDPS---KYTVEIVHLGTD------------------KARIAEAEKAGVKS-----   55 (80)
T ss_dssp             EEEEEE-ECSCHHHHHHHHHHHHHSCTT---TEEEEEEETTTC------------------SSTHHHHHHHTCCE-----
T ss_pred             ceEEEe-CCCCCchHHHHHHHHHHHHhc---CCeEEEEEecCC------------------hhhHHHHHHcCCCc-----
Confidence            467788 999999999999998876543   445444444321                  02346677888886     


Q ss_pred             CCccEEEEEcCCCcEEE
Q 028030          177 LPGRQTYILDKNGVVQL  193 (215)
Q Consensus       177 ~p~~~~~lid~~G~v~~  193 (215)
                      +|  +++ +  +|+++.
T Consensus        56 vP--t~~-i--~g~~~~   67 (80)
T 2k8s_A           56 VP--ALV-I--DGAAFH   67 (80)
T ss_dssp             EE--EEE-E--TTEEEE
T ss_pred             CC--EEE-E--CCEEEE
Confidence            88  554 4  788764

>1ego_A Glutaredoxin; electron transport; NMR {Escherichia coli} SCOP: c.47.1.1 PDB: 1egr_A 1grx_A* 1qfn_A

Probab=98.11  E-value=8.3e-06  Score=53.51  Aligned_cols=65  Identities=12%  Similarity=0.113  Sum_probs=46.4

Q ss_pred             EEEEEcCCCChhhHHHHHHHHHHHHHHHHcCcEEEEEeCCCHHHHHHHHHHcCCCeEEEEcCChhHHHHhC--CCccCCC
Q 028030           98 VVYFYPADETPGCTKQACAFRDSYEKFKKAGAEVIGISGDDSSSHKAFAKKYRLPYTLLSDEGNKVRKEWG--VPADFFG  175 (215)
Q Consensus        98 ll~f~~a~~C~~C~~~~~~l~~l~~~~~~~~v~vv~vs~d~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~g--~~~~~~g  175 (215)
                      |+.|+ ++||++|+...+.|.++.++++  ++.+..+.++...                 +...++.+.+|  +..    
T Consensus         3 v~~f~-~~~C~~C~~~~~~l~~l~~~~~--~i~~~~vdi~~~~-----------------~~~~~l~~~~~~~~~~----   58 (85)
T 1ego_A            3 TVIFG-RSGCPYCVRAKDLAEKLSNERD--DFQYQYVDIRAEG-----------------ITKEDLQQKAGKPVET----   58 (85)
T ss_dssp             EEEEC-CTTSTHHHHHHHHHHHHHHHHS--SCEEEEECHHHHT-----------------CCSHHHHHHTCCCSCC----
T ss_pred             EEEEe-CCCCCCHHHHHHHHHHHHhcCC--CceEEEEecccCh-----------------HHHHHHHHHhCCCCce----
Confidence            67788 9999999999999999887764  6888888653321                 11235677777  555    


Q ss_pred             CCCccEEEEEcCCCcEE
Q 028030          176 SLPGRQTYILDKNGVVQ  192 (215)
Q Consensus       176 ~~p~~~~~lid~~G~v~  192 (215)
                       +|  .+ ++  +|+.+
T Consensus        59 -vP--~i-~~--~g~~i   69 (85)
T 1ego_A           59 -VP--QI-FV--DQQHI   69 (85)
T ss_dssp             -SC--EE-EE--TTEEE
T ss_pred             -eC--eE-EE--CCEEE
Confidence             89  55 45  57764

>1wjk_A C330018D20RIK protein; glutaredoxin, thioredoxin fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: c.47.1.1

Probab=98.10  E-value=4.8e-06  Score=57.09  Aligned_cols=63  Identities=16%  Similarity=0.205  Sum_probs=45.4

Q ss_pred             CCcEEEEEEcCCCChhhHHHHHHHHHHHHHHHHcCcEEEEEeCCCHHHHHHHHHHcCCCeEEEEcCChhHHHHhCCCccC
Q 028030           94 GKPVVVYFYPADETPGCTKQACAFRDSYEKFKKAGAEVIGISGDDSSSHKAFAKKYRLPYTLLSDEGNKVRKEWGVPADF  173 (215)
Q Consensus        94 gk~~ll~f~~a~~C~~C~~~~~~l~~l~~~~~~~~v~vv~vs~d~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~g~~~~~  173 (215)
                      .+++|+.|| +.||++|+...+.|.++.     +++.+.-|.+|++                   ++.++...|| ..  
T Consensus        15 ~~~~v~~f~-~~~C~~C~~~~~~L~~l~-----~~i~~~~vdi~~~-------------------~~~el~~~~g-~~--   66 (100)
T 1wjk_A           15 ALPVLTLFT-KAPCPLCDEAKEVLQPYK-----DRFILQEVDITLP-------------------ENSTWYERYK-FD--   66 (100)
T ss_dssp             CCCEEEEEE-CSSCHHHHHHHHHTSTTS-----SSSEEEEEETTSS-------------------TTHHHHHHSS-SS--
T ss_pred             CCCEEEEEe-CCCCcchHHHHHHHHHhh-----hCCeEEEEECCCc-------------------chHHHHHHHC-CC--
Confidence            467888999 999999999988887653     2478888877632                   2346677888 65  


Q ss_pred             CCCCCccEEEEEcCCCcEE
Q 028030          174 FGSLPGRQTYILDKNGVVQ  192 (215)
Q Consensus       174 ~g~~p~~~~~lid~~G~v~  192 (215)
                         +|  . +++  +|+++
T Consensus        67 ---vP--~-l~~--~g~~~   77 (100)
T 1wjk_A           67 ---IP--V-FHL--NGQFL   77 (100)
T ss_dssp             ---CS--E-EEE--SSSEE
T ss_pred             ---CC--E-EEE--CCEEE
Confidence               89  4 445  57765

>3hz8_A Thiol:disulfide interchange protein DSBA; thiol-oxidoreductase, disulfide bond; 1.45A {Neisseria meningitidis MC58} PDB: 3dvw_A 3a3t_A

Probab=98.02  E-value=1.1e-05  Score=61.77  Aligned_cols=43  Identities=19%  Similarity=0.201  Sum_probs=37.1

Q ss_pred             CCCcEEEEEEcCCCChhhHHHHHHHHHHHHHHHHcCcEEEEEeCC
Q 028030           93 KGKPVVVYFYPADETPGCTKQACAFRDSYEKFKKAGAEVIGISGD  137 (215)
Q Consensus        93 ~gk~~ll~f~~a~~C~~C~~~~~~l~~l~~~~~~~~v~vv~vs~d  137 (215)
                      .++++|+.|| ..|||+|....+.+.++.+++++ ++.+.-+.++
T Consensus        23 ~~~v~vv~f~-d~~Cp~C~~~~~~l~~~~~~~~~-~v~~~~~p~~   65 (193)
T 3hz8_A           23 AGKVEVLEFF-GYFCPHCAHLEPVLSKHAKSFKD-DMYLRTEHVV   65 (193)
T ss_dssp             TTSEEEEEEE-CTTCHHHHHHHHHHHHHHTTCCT-TEEEEEEECC
T ss_pred             CCCcEEEEEE-CCCChhHHHHHHHHHHHHHHCCC-CeEEEEecCC
Confidence            4789999999 99999999999999999988877 4777777653

>2c0g_A ERP29 homolog, windbeutel protein; PDI-dbeta, PDI, protein disulfide isomerase, PIPE, dorsal-ventral patterning, chaperone, WIND mutants; 1.75A {Drosophila melanogaster} SCOP: a.71.1.1 c.47.1.7 PDB: 1ovn_A 2c0f_A 2c1y_A 2c0e_A

Probab=97.94  E-value=8.3e-05  Score=59.36  Aligned_cols=88  Identities=15%  Similarity=0.162  Sum_probs=58.9

Q ss_pred             CCCcEEEEEEc-CCCChhhHHHHHHHHHHHHHHHH--cCcEEEEEeCCCHHHHHHHHHHcCCCeEEEEcCChhHHHHhCC
Q 028030           93 KGKPVVVYFYP-ADETPGCTKQACAFRDSYEKFKK--AGAEVIGISGDDSSSHKAFAKKYRLPYTLLSDEGNKVRKEWGV  169 (215)
Q Consensus        93 ~gk~~ll~f~~-a~~C~~C~~~~~~l~~l~~~~~~--~~v~vv~vs~d~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~g~  169 (215)
                      .++++||.||. ++||+    ..|.+.++++++.+  .++.|.-|.+|+..+                ..+.++...|++
T Consensus        32 ~~~~vlV~Fy~~ApWCg----l~P~~e~lA~~~~~~~~~v~~akVD~d~~g~----------------~~n~~la~~~~V   91 (248)
T 2c0g_A           32 RFPYSVVKFDIASPYGE----KHEAFTAFSKSAHKATKDLLIATVGVKDYGE----------------LENKALGDRYKV   91 (248)
T ss_dssp             TSSEEEEEEEESSCCSH----HHHHHHHHHHHHHHHCSSEEEEEEEECSSTT----------------CTTHHHHHHTTC
T ss_pred             cCCCEEEEEECCCCCCc----cHHHHHHHHHHHhccCCCeEEEEEECCcccc----------------cccHHHHHHhCC
Confidence            35789999984 79998    88999999999875  357777787543100                015678899999


Q ss_pred             C--ccCCCCCCccEEEEEcCCCcE--EEEE--eCCCCCCccHHHHHHHHh
Q 028030          170 P--ADFFGSLPGRQTYILDKNGVV--QLIY--NNQFQPEKHIDETLKFLQ  213 (215)
Q Consensus       170 ~--~~~~g~~p~~~~~lid~~G~v--~~~~--~g~~~~~~~~~~il~~l~  213 (215)
                      .  .     +|  +++++-  |++  ...+  .|.    ...+++.+.|+
T Consensus        92 ~~~~-----~P--Tl~~F~--G~~~~~~~y~~~G~----~~~~~L~~fi~  128 (248)
T 2c0g_A           92 DDKN-----FP--SIFLFK--GNADEYVQLPSHVD----VTLDNLKAFVS  128 (248)
T ss_dssp             CTTS-----CC--EEEEES--SSSSSEEECCTTSC----CCHHHHHHHHH
T ss_pred             CcCC-----CC--eEEEEe--CCcCcceeecccCC----CCHHHHHHHHH
Confidence            9  7     99  777774  773  3345  553    23344555443

>3l9v_A Putative thiol-disulfide isomerase or thioredoxin; thioredoxin-fold, SRGA, thiol-disulfide oxidoreductase, ISOM oxidoreductase; HET: PE8 P4C P6G; 2.15A {Salmonella enterica subsp} SCOP: c.47.1.0

Probab=97.82  E-value=5.9e-06  Score=63.16  Aligned_cols=42  Identities=17%  Similarity=0.283  Sum_probs=34.0

Q ss_pred             CCCcEEEEEEcCCCChhhHHHHHHH---HHHHHHHHHcCcEEEEEeC
Q 028030           93 KGKPVVVYFYPADETPGCTKQACAF---RDSYEKFKKAGAEVIGISG  136 (215)
Q Consensus        93 ~gk~~ll~f~~a~~C~~C~~~~~~l---~~l~~~~~~~~v~vv~vs~  136 (215)
                      .++++||.|| ..|||+|....+.+   .++.+++.+ +++++.+..
T Consensus        13 ~~~~~vvef~-d~~Cp~C~~~~~~~~~~~~~~~~~~~-~v~~~~~~~   57 (189)
T 3l9v_A           13 VDAPAVVEFF-SFYCPPCYAFSQTMGVDQAIRHVLPQ-GSRMVKYHV   57 (189)
T ss_dssp             TTCCSEEEEE-CTTCHHHHHHHHTSCHHHHHHTTCCT-TCCEEEEEC
T ss_pred             CCCCEEEEEE-CCCChhHHHHhHhccchHHHHHhCCC-CCEEEEEec
Confidence            4689999999 99999999999986   577776765 477777654

>3kp9_A Vkorc1/thioredoxin domain protein; warfarin, disulfide formation, blood coagulation, oxidoreduc blood coagulation,oxidoreductase; HET: U10; 3.60A {Synechococcus SP}

Probab=97.81  E-value=1.6e-05  Score=65.02  Aligned_cols=86  Identities=17%  Similarity=0.247  Sum_probs=54.4

Q ss_pred             eecCCcCCCcEEEEEEcCCCChhhHHHHHHHHHHHHHHHHcCcEEEEEeCCCHHHHHHHHHHcCCCeEEEEcCChhHHHH
Q 028030           87 VSLSKFKGKPVVVYFYPADETPGCTKQACAFRDSYEKFKKAGAEVIGISGDDSSSHKAFAKKYRLPYTLLSDEGNKVRKE  166 (215)
Q Consensus        87 ~~l~~~~gk~~ll~f~~a~~C~~C~~~~~~l~~l~~~~~~~~v~vv~vs~d~~~~~~~~~~~~~~~~~~~~d~~~~~~~~  166 (215)
                      ..+.+..++..+++|| ++||++|++..|.++++.+++     ..+-+..++.                 .|++.++.++
T Consensus       190 ~~la~~l~~~~vV~F~-A~WC~~Ck~l~p~le~lA~~l-----~~Vd~d~~d~-----------------~~~~~~la~~  246 (291)
T 3kp9_A          190 VGLAAHLRQIGGTMYG-AYWCPHCQDQKELFGAAFDQV-----PYVECSPNGP-----------------GTPQAQECTE  246 (291)
T ss_dssp             HHHHHHHHHTTCEEEE-CTTCHHHHHHHHHHGGGGGGS-----CEEESCSSCS-----------------SSCCCHHHHT
T ss_pred             HHHHHHhCCCCEEEEE-CCCCHHHHHHHHHHHHHHHHc-----CEEEEeecCc-----------------hhhHHHHHHH
Confidence            4444443455679999 999999999999999886443     2222221110                 0336788999


Q ss_pred             hCCCccCCCCCCccEEEEEcCCCcEEEEEeCCCCCCccHHHHHHHH
Q 028030          167 WGVPADFFGSLPGRQTYILDKNGVVQLIYNNQFQPEKHIDETLKFL  212 (215)
Q Consensus       167 ~g~~~~~~g~~p~~~~~lid~~G~v~~~~~g~~~~~~~~~~il~~l  212 (215)
                      |++..     +|  + +++  ||+.   +.|..    ..+++.+.+
T Consensus       247 ~gI~~-----vP--T-~~i--~G~~---~~G~~----~~~~L~~~l  275 (291)
T 3kp9_A          247 AGITS-----YP--T-WII--NGRT---YTGVR----SLEALAVAS  275 (291)
T ss_dssp             TTCCS-----TT--E-EEE--TTEE---EESCC----CHHHHHHHT
T ss_pred             cCCcc-----cC--e-EEE--CCEE---ecCCC----CHHHHHHHH
Confidence            99997     99  5 445  6764   56632    345555544

>2hls_A Protein disulfide oxidoreductase; thioredoxin fold; 1.93A {Aeropyrum pernix}

Probab=97.76  E-value=9.4e-05  Score=58.73  Aligned_cols=72  Identities=15%  Similarity=0.209  Sum_probs=51.8

Q ss_pred             CCcEEEEEEcCCC--ChhhHHHHHHHHHHHHHHHH-cC---cEEEEEeCCCHHHHHHHHHHcCCCeEEEEcCChhHHHHh
Q 028030           94 GKPVVVYFYPADE--TPGCTKQACAFRDSYEKFKK-AG---AEVIGISGDDSSSHKAFAKKYRLPYTLLSDEGNKVRKEW  167 (215)
Q Consensus        94 gk~~ll~f~~a~~--C~~C~~~~~~l~~l~~~~~~-~~---v~vv~vs~d~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~  167 (215)
                      +++++|.|| +.|  |++|+...+.+.++++.+.+ +|   +.|+.+..                     |.+..+...|
T Consensus        25 ~~pv~v~~~-~~~~~c~~c~~~~~~l~ela~~~~~~~~~~~v~~~~vd~---------------------d~~~~~~~~~   82 (243)
T 2hls_A           25 VNPVEVHVF-LSKSGCETCEDTLRLMKLFEEESPTRNGGKLLKLNVYYR---------------------ESDSDKFSEF   82 (243)
T ss_dssp             CSCEEEEEE-ECSSSCTTHHHHHHHHHHHHHHSCEETTEESEEEEEEET---------------------TTTHHHHHHT
T ss_pred             CCCEEEEEE-eCCCCCCchHHHHHHHHHHHHhccCCCCCceeEEEEecC---------------------CcCHHHHHhc
Confidence            478999999 899  99999999999999877532 12   66666653                     4456788899


Q ss_pred             CCCccCCCCCCccEEEEEcCCCcEEEEEeCC
Q 028030          168 GVPADFFGSLPGRQTYILDKNGVVQLIYNNQ  198 (215)
Q Consensus       168 g~~~~~~g~~p~~~~~lid~~G~v~~~~~g~  198 (215)
                      |+..     +|  ++.++  +|  ...+.|.
T Consensus        83 gv~~-----~P--t~~i~--~g--~~~~~G~  102 (243)
T 2hls_A           83 KVER-----VP--TVAFL--GG--EVRWTGI  102 (243)
T ss_dssp             TCCS-----SS--EEEET--TT--TEEEESC
T ss_pred             CCCc-----CC--EEEEE--CC--ceeEcCC
Confidence            9986     89  55555  45  3345553

>1h75_A Glutaredoxin-like protein NRDH; electron transport, thioredoxin, redox protein; 1.7A {Escherichia coli} SCOP: c.47.1.1

Probab=97.73  E-value=8.7e-05  Score=48.09  Aligned_cols=36  Identities=14%  Similarity=0.254  Sum_probs=27.3

Q ss_pred             EEEEEcCCCChhhHHHHHHHHHHHHHHHHcCcEEEEEeCCCHHH
Q 028030           98 VVYFYPADETPGCTKQACAFRDSYEKFKKAGAEVIGISGDDSSS  141 (215)
Q Consensus        98 ll~f~~a~~C~~C~~~~~~l~~l~~~~~~~~v~vv~vs~d~~~~  141 (215)
                      |+.|| ++||++|+...+.|.+       .|+.+..+.+|...+
T Consensus         3 v~~f~-~~~C~~C~~~~~~l~~-------~~i~~~~vdi~~~~~   38 (81)
T 1h75_A            3 ITIYT-RNDCVQCHATKRAMEN-------RGFDFEMINVDRVPE   38 (81)
T ss_dssp             EEEEE-CTTCHHHHHHHHHHHH-------TTCCCEEEETTTCHH
T ss_pred             EEEEc-CCCChhHHHHHHHHHH-------CCCCeEEEECCCCHH
Confidence            67788 9999999988777664       367888888775433

>3gv1_A Disulfide interchange protein; neisseria gonorrhoeae (strain 700825 / FA 1090), DSBC, structural genomics, unknown funct 2; 2.00A {Neisseria gonorrhoeae}

Probab=97.66  E-value=4.9e-05  Score=55.84  Aligned_cols=99  Identities=17%  Similarity=0.290  Sum_probs=58.6

Q ss_pred             CCCcEEEEEEcCCCChhhHHHHHHHHHHHHHHHHcCcEEEEE--eC---CC--------------H-HHHHHHHHHcCCC
Q 028030           93 KGKPVVVYFYPADETPGCTKQACAFRDSYEKFKKAGAEVIGI--SG---DD--------------S-SSHKAFAKKYRLP  152 (215)
Q Consensus        93 ~gk~~ll~f~~a~~C~~C~~~~~~l~~l~~~~~~~~v~vv~v--s~---d~--------------~-~~~~~~~~~~~~~  152 (215)
                      .++++|++|+ -.+||+|++..+.+.++    .  +++|+.+  ..   +.              + +.+.+++..-+.+
T Consensus        13 ~a~~~vv~f~-D~~Cp~C~~~~~~l~~l----~--~v~v~~~~~P~~~~~~~s~~~a~a~~ca~d~~~a~~~~~~~g~~~   85 (147)
T 3gv1_A           13 NGKLKVAVFS-DPDCPFCKRLEHEFEKM----T--DVTVYSFMMPIAGLHPDAARKAQILWCQPDRAKAWTDWMRKGKFP   85 (147)
T ss_dssp             TCCEEEEEEE-CTTCHHHHHHHHHHTTC----C--SEEEEEEECCCTTTCTTHHHHHHHHHTSSSHHHHHHHHHHHCCCC
T ss_pred             CCCEEEEEEE-CCCChhHHHHHHHHhhc----C--ceEEEEEEccccccChhHHHHHHHHHcCCCHHHHHHHHHhCCCCC
Confidence            5789999999 99999999999988765    2  3666544  33   11              1 1233333322221


Q ss_pred             --eE---EEEcCChhHHHHhCCCccCCCCCCccEEEEEcCCCcEEEEEeCCCCCCccHHHHHHH
Q 028030          153 --YT---LLSDEGNKVRKEWGVPADFFGSLPGRQTYILDKNGVVQLIYNNQFQPEKHIDETLKF  211 (215)
Q Consensus       153 --~~---~~~d~~~~~~~~~g~~~~~~g~~p~~~~~lid~~G~v~~~~~g~~~~~~~~~~il~~  211 (215)
                        .+   -..+.+.++++.+|+.+     +|   ++++ .||++   ..|..+. +.++++++.
T Consensus        86 ~~~~~~~~~v~~~~~la~~~gI~g-----tP---t~vi-~nG~~---i~G~~~~-~~l~~~i~~  136 (147)
T 3gv1_A           86 VGGSICDNPVAETTSLGEQFGFNG-----TP---TLVF-PNGRT---QSGYSPM-PQLEEIIRK  136 (147)
T ss_dssp             TTCCCCSCSHHHHHHHHHHTTCCS-----SC---EEEC-TTSCE---EESCCCT-THHHHHHHH
T ss_pred             CccHHHHHHHHHHHHHHHHhCCCc-----cC---EEEE-ECCEE---eeCCCCH-HHHHHHHHH
Confidence              11   11223567889999998     99   4555 57874   4454433 345555544

>3feu_A Putative lipoprotein; alpha-beta structure, structural genomics, PSI-2, protein ST initiative, midwest center for structural genomics, MCSG; HET: MSE; 1.76A {Vibrio fischeri} SCOP: c.47.1.0

Probab=97.59  E-value=4.4e-05  Score=58.08  Aligned_cols=39  Identities=13%  Similarity=0.105  Sum_probs=33.1

Q ss_pred             CCcEEEEEEcCCCChhhHHHHHHHHHHHHHHHHcCcEEEEEeC
Q 028030           94 GKPVVVYFYPADETPGCTKQACAFRDSYEKFKKAGAEVIGISG  136 (215)
Q Consensus        94 gk~~ll~f~~a~~C~~C~~~~~~l~~l~~~~~~~~v~vv~vs~  136 (215)
                      ++++||.|| ..|||+|....|.+.++.+++   ++.+.-+.+
T Consensus        22 ~~~~vvef~-d~~Cp~C~~~~~~~~~~~~~~---~v~~~~~p~   60 (185)
T 3feu_A           22 GMAPVTEVF-ALSCGHCRNMENFLPVISQEA---GTDIGKMHI   60 (185)
T ss_dssp             CCCSEEEEE-CTTCHHHHHHGGGHHHHHHHH---TSCCEEEEC
T ss_pred             CCCEEEEEE-CCCChhHHHhhHHHHHHHHHh---CCeEEEEec
Confidence            689999999 999999999999999999988   355555544

>1r7h_A NRDH-redoxin; thioredoxin, glutaredoxin, redox protein, domain swapping, electron transport; 2.69A {Corynebacterium ammoniagenes} SCOP: c.47.1.1

Probab=97.55  E-value=0.00019  Score=45.51  Aligned_cols=35  Identities=11%  Similarity=0.137  Sum_probs=26.2

Q ss_pred             EEEEEcCCCChhhHHHHHHHHHHHHHHHHcCcEEEEEeCCCHH
Q 028030           98 VVYFYPADETPGCTKQACAFRDSYEKFKKAGAEVIGISGDDSS  140 (215)
Q Consensus        98 ll~f~~a~~C~~C~~~~~~l~~l~~~~~~~~v~vv~vs~d~~~  140 (215)
                      ++.|+ +.||++|+...+.|.++       |+.+..+.++...
T Consensus         3 i~~y~-~~~C~~C~~~~~~l~~~-------~i~~~~~di~~~~   37 (75)
T 1r7h_A            3 ITLYT-KPACVQCTATKKALDRA-------GLAYNTVDISLDD   37 (75)
T ss_dssp             EEEEE-CTTCHHHHHHHHHHHHT-------TCCCEEEETTTCH
T ss_pred             EEEEe-CCCChHHHHHHHHHHHc-------CCCcEEEECCCCH
Confidence            56788 99999999887777653       6777777776543

>3uem_A Protein disulfide-isomerase; thioredoxin-like domain, chaper; 2.29A {Homo sapiens} PDB: 2k18_A 1x5c_A 1bjx_A 2bjx_A

Probab=97.50  E-value=0.00032  Score=58.47  Aligned_cols=70  Identities=16%  Similarity=0.313  Sum_probs=52.5

Q ss_pred             CcEEEEEEcCCCChhhHHHHHHHHHHHHHHHHcCcEEEEEeCCCHHHHHHHHHHcCCCeEEEEcCChhHHHHhCCCccCC
Q 028030           95 KPVVVYFYPADETPGCTKQACAFRDSYEKFKKAGAEVIGISGDDSSSHKAFAKKYRLPYTLLSDEGNKVRKEWGVPADFF  174 (215)
Q Consensus        95 k~~ll~f~~a~~C~~C~~~~~~l~~l~~~~~~~~v~vv~vs~d~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~g~~~~~~  174 (215)
                      +.++|.|+ +.||+.|+...+.+.+++++++++ +.++.|..+..                   ....+.+.||+...  
T Consensus       136 ~~~~v~F~-~~~~~~~~~~~~~~~~~A~~~~~~-i~f~~vd~~~~-------------------~~~~~~~~fgi~~~--  192 (361)
T 3uem_A          136 KTHILLFL-PKSVSDYDGKLSNFKTAAESFKGK-ILFIFIDSDHT-------------------DNQRILEFFGLKKE--  192 (361)
T ss_dssp             CEEEEEEC-CSSSSSHHHHHHHHHHHHGGGTTT-CEEEEECTTSG-------------------GGHHHHHHTTCCTT--
T ss_pred             CcEEEEEE-eCCchhHHHHHHHHHHHHHHccCc-eEEEEecCChH-------------------HHHHHHHHcCCCcc--
Confidence            45678888 999999999999999999999875 88888876532                   23466777888631  


Q ss_pred             CCCCccEEEEEcCCCc
Q 028030          175 GSLPGRQTYILDKNGV  190 (215)
Q Consensus       175 g~~p~~~~~lid~~G~  190 (215)
                       .+|  ++++++.++.
T Consensus       193 -~~P--~~~~~~~~~~  205 (361)
T 3uem_A          193 -ECP--AVRLITLEEE  205 (361)
T ss_dssp             -TCS--EEEEEECC--
T ss_pred             -CCc--cEEEEEcCCc
Confidence             278  8888876444

>4dvc_A Thiol:disulfide interchange protein DSBA; pilus assembly, oxidoreductase, thioredoxin fold, D disulfide bond, DSBB; HET: DMS; 1.20A {Vibrio cholerae} PDB: 2ijy_A 1bed_A

Probab=97.47  E-value=0.00017  Score=53.93  Aligned_cols=41  Identities=17%  Similarity=0.243  Sum_probs=33.6

Q ss_pred             CCCcEEEEEEcCCCChhhHHHHHHHHHHHHHHHHcCcEEEEEe
Q 028030           93 KGKPVVVYFYPADETPGCTKQACAFRDSYEKFKKAGAEVIGIS  135 (215)
Q Consensus        93 ~gk~~ll~f~~a~~C~~C~~~~~~l~~l~~~~~~~~v~vv~vs  135 (215)
                      .++++||.|+ .-.||+|....+.+.++.+++.+. +.++.+.
T Consensus        20 ~~~~~vvEf~-dy~Cp~C~~~~~~~~~l~~~~~~~-~~~~~~~   60 (184)
T 4dvc_A           20 SSSPVVSEFF-SFYCPHCNTFEPIIAQLKQQLPEG-AKFQKNH   60 (184)
T ss_dssp             CSSCEEEEEE-CTTCHHHHHHHHHHHHHHHTSCTT-CEEEEEE
T ss_pred             CCCCEEEEEE-CCCCHhHHHHhHHHHHHHhhcCCc-eEEEEEe
Confidence            4689999999 899999999999999998888764 5555543

>2ec4_A FAS-associated factor 1; UAS domain, protein FAF1, HFAF1, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=97.47  E-value=0.001  Score=50.28  Aligned_cols=108  Identities=10%  Similarity=0.079  Sum_probs=70.5

Q ss_pred             CcCCCcEEEEEEcCCCChhhHHHHHHH---HHHHHHHHHcCcEEEEEeCCCHHHHHHHHHHcCCCeEEEEcCChhHH---
Q 028030           91 KFKGKPVVVYFYPADETPGCTKQACAF---RDSYEKFKKAGAEVIGISGDDSSSHKAFAKKYRLPYTLLSDEGNKVR---  164 (215)
Q Consensus        91 ~~~gk~~ll~f~~a~~C~~C~~~~~~l---~~l~~~~~~~~v~vv~vs~d~~~~~~~~~~~~~~~~~~~~d~~~~~~---  164 (215)
                      .-.+|+++|++. ++||..|...-..+   .++.+-+.+ ++.+++.++++.+..+.++...+-.+      ...+.   
T Consensus        52 k~e~K~LlVyLh-s~~~~~~~~f~~~~L~~~~V~~~l~~-nfV~w~~dv~~~e~~~~~~~~~~~~~------g~~~a~~~  123 (178)
T 2ec4_A           52 ARDRKLLAIYLH-HDESVLTNVFCSQMLCAESIVSYLSQ-NFITWAWDLTKDSNRARFLTMCNRHF------GSVVAQTI  123 (178)
T ss_dssp             TTTCCEEEEEEE-CSSCSHHHHHHHHTTTCHHHHHHHHH-TEEEEEEECCSHHHHHHHHHHHHHHT------CHHHHHHH
T ss_pred             hhhCcEEEEEEe-CCCCccHHHHHHHhcCCHHHHHHHHc-CEEEEEEeCCCchhhhhhhhhhhhhh------HHHHHHHH
Confidence            345799999999 99999998766544   233333443 68899999888775444333211000      22333   


Q ss_pred             HHhCCCccCCCCCCccEEEEEcCCC---cEEEEEeCCCCCCccHHHHHHHHh
Q 028030          165 KEWGVPADFFGSLPGRQTYILDKNG---VVQLIYNNQFQPEKHIDETLKFLQ  213 (215)
Q Consensus       165 ~~~g~~~~~~g~~p~~~~~lid~~G---~v~~~~~g~~~~~~~~~~il~~l~  213 (215)
                      +.|++..     +|  ..++|+++|   +|+.+..|..+.++.++.+.+.++
T Consensus       124 ~~~~~~~-----~P--~l~ii~~~~~~~~vl~~~~G~~~~~~ll~~L~~~~e  168 (178)
T 2ec4_A          124 RTQKTDQ-----FP--LFLIIMGKRSSNEVLNVIQGNTTVDELMMRLMAAME  168 (178)
T ss_dssp             HHSCSTT-----CS--EEEEECCCSSCCCEEEEECSCCCHHHHHHHHHHHHH
T ss_pred             hhcCCCC-----CC--eEEEEEcCCCceEEEEEEeCCCCHHHHHHHHHHHHH
Confidence            3377776     88  999998764   788999997766665555555543

>3l9s_A Thiol:disulfide interchange protein; thioredoxin-fold, DSBA, thiol-disulfide oxidoreductase, DISU bond, redox-active center; 1.58A {Salmonella enterica subsp} SCOP: c.47.1.13 PDB: 1a23_A 1a24_A 1a2j_A 1a2l_A 1a2m_A 1dsb_A 1fvk_A 3dks_A 1bq7_A 1fvj_A 1acv_A 1u3a_A* 1ti1_A* 2hi7_A* 2leg_A* 2zup_A* 3e9j_B* 1ac1_A 2b6m_A 2b3s_A

Probab=97.41  E-value=0.00034  Score=53.46  Aligned_cols=42  Identities=19%  Similarity=0.360  Sum_probs=34.2

Q ss_pred             CCCcEEEEEEcCCCChhhHHHHHHH---HHHHHHHHHcCcEEEEEeC
Q 028030           93 KGKPVVVYFYPADETPGCTKQACAF---RDSYEKFKKAGAEVIGISG  136 (215)
Q Consensus        93 ~gk~~ll~f~~a~~C~~C~~~~~~l---~~l~~~~~~~~v~vv~vs~  136 (215)
                      .++++|+.|+ ..+||+|....+.+   .++.+++.+ +++++.+..
T Consensus        20 ~~~~~vvef~-d~~Cp~C~~~~~~l~~~~~l~~~~~~-~v~~~~~~~   64 (191)
T 3l9s_A           20 AGEPQVLEFF-SFYCPHCYQFEEVLHVSDNVKKKLPE-GTKMTKYHV   64 (191)
T ss_dssp             CSSSCEEEEE-CTTCHHHHHHHHTSCHHHHHHHHSCT-TCCEEEEEC
T ss_pred             CCCCeEEEEE-CCCChhHHHhChhccchHHHHHhCCC-CcEEEEEec
Confidence            4689999999 99999999999987   588888876 366666553

>1un2_A DSBA, thiol-disulfide interchange protein; disulfide oxidoreductase, oxidoreductase, protein disulfide isomerase, protein folding, thioredoxin; 2.4A {Escherichia coli} SCOP: c.47.1.13

Probab=97.40  E-value=4.1e-05  Score=59.01  Aligned_cols=43  Identities=19%  Similarity=0.343  Sum_probs=37.2

Q ss_pred             CCCcEEEEEEcCCCChhhHHHHHHH---HHHHHHHHHcCcEEEEEeCC
Q 028030           93 KGKPVVVYFYPADETPGCTKQACAF---RDSYEKFKKAGAEVIGISGD  137 (215)
Q Consensus        93 ~gk~~ll~f~~a~~C~~C~~~~~~l---~~l~~~~~~~~v~vv~vs~d  137 (215)
                      .++++||.|| +.||++|....|.+   .++.+++++ ++.+.-+.++
T Consensus       112 ~~~~~vveFf-~~~C~~C~~~~p~~~~~~~l~~~~~~-~v~~~~~~v~  157 (197)
T 1un2_A          112 AGAPQVLEFF-SFFCPHCYQFEEVLHISDNVKKKLPE-GVKMTKYHVN  157 (197)
T ss_dssp             TTCCSEEEEE-CTTCHHHHHHHHTSCHHHHHTTSSCT-TCCEEEEECS
T ss_pred             CCCCEEEEEE-CCCChhHHHhCcccccHHHHHHHCCC-CCEEEEeccC
Confidence            4689999999 99999999999998   898888875 5888887764

>2cq9_A GLRX2 protein, glutaredoxin 2; glutathione-S-transferase, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=97.05  E-value=0.0033  Score=44.78  Aligned_cols=32  Identities=25%  Similarity=0.255  Sum_probs=22.9

Q ss_pred             EEEEEcCCCChhhHHHHHHHHHHHHHHHHcCcEEEEEeCC
Q 028030           98 VVYFYPADETPGCTKQACAFRDSYEKFKKAGAEVIGISGD  137 (215)
Q Consensus        98 ll~f~~a~~C~~C~~~~~~l~~l~~~~~~~~v~vv~vs~d  137 (215)
                      |+.|+ ++||++|+...+.|.++       ++.+..+.+|
T Consensus        29 vvvf~-~~~Cp~C~~~~~~L~~~-------~i~~~~vdid   60 (130)
T 2cq9_A           29 VVIFS-KTSCSYCTMAKKLFHDM-------NVNYKVVELD   60 (130)
T ss_dssp             EEEEE-CSSCSHHHHHHHHHHHH-------TCCCEEEETT
T ss_pred             EEEEE-cCCChHHHHHHHHHHHc-------CCCcEEEECc
Confidence            34488 99999999888877764       4555555554

>2hze_A Glutaredoxin-1; thioredoxin fold, arsenic, dimethylarsenite., electron trans oxidoreductase; 1.80A {Ectromelia virus} PDB: 2hzf_A 2hze_B

Probab=97.03  E-value=0.0012  Score=45.80  Aligned_cols=25  Identities=16%  Similarity=0.163  Sum_probs=19.4

Q ss_pred             CcEEEEEEcCCCChhhHHHHHHHHHH
Q 028030           95 KPVVVYFYPADETPGCTKQACAFRDS  120 (215)
Q Consensus        95 k~~ll~f~~a~~C~~C~~~~~~l~~l  120 (215)
                      +..|+.|+ ++||++|+...+.|.++
T Consensus        18 ~~~vv~f~-~~~Cp~C~~~~~~L~~~   42 (114)
T 2hze_A           18 NNKVTIFV-KYTCPFCRNALDILNKF   42 (114)
T ss_dssp             TTCEEEEE-CTTCHHHHHHHHHHTTS
T ss_pred             cCCEEEEE-eCCChhHHHHHHHHHHc
Confidence            44677788 99999999887766543

>2klx_A Glutaredoxin; thioredoxin type domain, ssgcid, electron TRAN structural genomics, seattle structural genomics center for infectious disease; NMR {Bartonella henselae}

Probab=96.96  E-value=0.002  Score=42.37  Aligned_cols=33  Identities=12%  Similarity=0.339  Sum_probs=25.0

Q ss_pred             EEEEEEcCCCChhhHHHHHHHHHHHHHHHHcCcEEEEEeCC
Q 028030           97 VVVYFYPADETPGCTKQACAFRDSYEKFKKAGAEVIGISGD  137 (215)
Q Consensus        97 ~ll~f~~a~~C~~C~~~~~~l~~l~~~~~~~~v~vv~vs~d  137 (215)
                      .++.|+ ++||++|+...+.|.++       ++.+..+.++
T Consensus         7 ~v~~y~-~~~C~~C~~~~~~L~~~-------~i~~~~vdv~   39 (89)
T 2klx_A            7 EIILYT-RPNCPYCKRARDLLDKK-------GVKYTDIDAS   39 (89)
T ss_dssp             CEEEES-CSCCTTTHHHHHHHHHH-------TCCEEEECSC
T ss_pred             eEEEEE-CCCChhHHHHHHHHHHc-------CCCcEEEECC
Confidence            366677 99999999887776653       5777777777

>2ht9_A Glutaredoxin-2; thioredoxin fold, iron-sulfur cluster, 2Fe2S, structural genomics, structural genomics consortium, SGC, oxidoreductase; HET: GSH; 1.90A {Homo sapiens} PDB: 2fls_A*

Probab=96.88  E-value=0.0037  Score=45.56  Aligned_cols=22  Identities=32%  Similarity=0.392  Sum_probs=17.7

Q ss_pred             EEEEEcCCCChhhHHHHHHHHHH
Q 028030           98 VVYFYPADETPGCTKQACAFRDS  120 (215)
Q Consensus        98 ll~f~~a~~C~~C~~~~~~l~~l  120 (215)
                      |+.|+ ++||++|+...+.|.++
T Consensus        51 Vvvf~-~~~Cp~C~~~k~~L~~~   72 (146)
T 2ht9_A           51 VVIFS-KTSCSYCTMAKKLFHDM   72 (146)
T ss_dssp             EEEEE-CTTCHHHHHHHHHHHHH
T ss_pred             EEEEE-CCCChhHHHHHHHHHHc
Confidence            44488 99999999888877765

>1kte_A Thioltransferase; redox-active center, electron transport, acetylation; 2.20A {Sus scrofa} SCOP: c.47.1.1 PDB: 1jhb_A 1b4q_A*

Probab=96.85  E-value=0.00035  Score=47.54  Aligned_cols=25  Identities=24%  Similarity=0.228  Sum_probs=19.9

Q ss_pred             cEEEEEEcCCCChhhHHHHHHHHHHH
Q 028030           96 PVVVYFYPADETPGCTKQACAFRDSY  121 (215)
Q Consensus        96 ~~ll~f~~a~~C~~C~~~~~~l~~l~  121 (215)
                      ..++.|+ ++||++|+...+.|.++.
T Consensus        12 ~~v~~f~-~~~C~~C~~~~~~L~~~~   36 (105)
T 1kte_A           12 GKVVVFI-KPTCPFCRKTQELLSQLP   36 (105)
T ss_dssp             TCEEEEE-CSSCHHHHHHHHHHHHSC
T ss_pred             CCEEEEE-cCCCHhHHHHHHHHHHcC
Confidence            3467788 999999998888777653

>3qmx_A Glutaredoxin A, glutaredoxin 3; electron transport; 1.82A {Synechocystis SP} SCOP: c.47.1.0

Probab=96.75  E-value=0.0046  Score=41.86  Aligned_cols=41  Identities=12%  Similarity=0.229  Sum_probs=29.4

Q ss_pred             CcEEEEEEcCCCChhhHHHHHHHHHHHHHHHHcCcEEEEEeCCCHHHHH
Q 028030           95 KPVVVYFYPADETPGCTKQACAFRDSYEKFKKAGAEVIGISGDDSSSHK  143 (215)
Q Consensus        95 k~~ll~f~~a~~C~~C~~~~~~l~~l~~~~~~~~v~vv~vs~d~~~~~~  143 (215)
                      +..|+.|+ .+||++|++....|.++       |+.+..+.++...+.+
T Consensus        15 ~~~v~vy~-~~~Cp~C~~ak~~L~~~-------~i~y~~idI~~~~~~~   55 (99)
T 3qmx_A           15 SAKIEIYT-WSTCPFCMRALALLKRK-------GVEFQEYCIDGDNEAR   55 (99)
T ss_dssp             CCCEEEEE-CTTCHHHHHHHHHHHHH-------TCCCEEEECTTCHHHH
T ss_pred             CCCEEEEE-cCCChhHHHHHHHHHHC-------CCCCEEEEcCCCHHHH
Confidence            45677788 99999999888777664       5666667766544333

>2yan_A Glutaredoxin-3; oxidoreductase; HET: GSH; 1.90A {Homo sapiens}

Probab=96.60  E-value=0.0085  Score=40.76  Aligned_cols=34  Identities=12%  Similarity=0.075  Sum_probs=23.5

Q ss_pred             cEEEEEEcC-----CCChhhHHHHHHHHHHHHHHHHcCcEEEEEeCCC
Q 028030           96 PVVVYFYPA-----DETPGCTKQACAFRDSYEKFKKAGAEVIGISGDD  138 (215)
Q Consensus        96 ~~ll~f~~a-----~~C~~C~~~~~~l~~l~~~~~~~~v~vv~vs~d~  138 (215)
                      .++| |+ .     +||++|+...+.|.++       ++.+..+.++.
T Consensus        18 ~vvv-f~-~g~~~~~~C~~C~~~~~~L~~~-------~i~~~~vdi~~   56 (105)
T 2yan_A           18 SVML-FM-KGNKQEAKCGFSKQILEILNST-------GVEYETFDILE   56 (105)
T ss_dssp             SEEE-EE-SBCSSSBCTTHHHHHHHHHHHH-------TCCCEEEEGGG
T ss_pred             CEEE-EE-ecCCCCCCCccHHHHHHHHHHC-------CCCeEEEECCC
Confidence            4444 66 6     9999999887777654       46666666643

>1fov_A Glutaredoxin 3, GRX3; active site disulfide, CIS Pro 53, electron transport; NMR {Escherichia coli} SCOP: c.47.1.1 PDB: 3grx_A*

Probab=96.58  E-value=0.0065  Score=38.86  Aligned_cols=33  Identities=15%  Similarity=0.326  Sum_probs=23.5

Q ss_pred             EEEEEcCCCChhhHHHHHHHHHHHHHHHHcCcEEEEEeCCC
Q 028030           98 VVYFYPADETPGCTKQACAFRDSYEKFKKAGAEVIGISGDD  138 (215)
Q Consensus        98 ll~f~~a~~C~~C~~~~~~l~~l~~~~~~~~v~vv~vs~d~  138 (215)
                      ++.|+ +.||++|+...+.|.+.       |+.+..+.++.
T Consensus         3 i~~y~-~~~C~~C~~~~~~l~~~-------~i~~~~~~i~~   35 (82)
T 1fov_A            3 VEIYT-KETCPYCHRAKALLSSK-------GVSFQELPIDG   35 (82)
T ss_dssp             EEEEE-CSSCHHHHHHHHHHHHH-------TCCCEEEECTT
T ss_pred             EEEEE-CCCChhHHHHHHHHHHC-------CCCcEEEECCC
Confidence            56677 99999999887777653       56666666553

>2lqo_A Putative glutaredoxin RV3198.1/MT3292; TRX fold, oxidoreductase; NMR {Mycobacterium tuberculosis}

Probab=96.45  E-value=0.006  Score=40.83  Aligned_cols=40  Identities=5%  Similarity=0.041  Sum_probs=27.4

Q ss_pred             EEEEEEcCCCChhhHHHHHHHHHHHHHHHHcCcEEEEEeCCCHHHHHH
Q 028030           97 VVVYFYPADETPGCTKQACAFRDSYEKFKKAGAEVIGISGDDSSSHKA  144 (215)
Q Consensus        97 ~ll~f~~a~~C~~C~~~~~~l~~l~~~~~~~~v~vv~vs~d~~~~~~~  144 (215)
                      .|+.|. .+|||+|.+.-..|       +++|+.+..+.++...+.++
T Consensus         5 ~I~vYs-~~~Cp~C~~aK~~L-------~~~gi~y~~idi~~d~~~~~   44 (92)
T 2lqo_A            5 ALTIYT-TSWCGYCLRLKTAL-------TANRIAYDEVDIEHNRAAAE   44 (92)
T ss_dssp             CEEEEE-CTTCSSHHHHHHHH-------HHTTCCCEEEETTTCHHHHH
T ss_pred             cEEEEc-CCCCHhHHHHHHHH-------HhcCCceEEEEcCCCHHHHH
Confidence            366677 99999999775444       34578888888765443333

>2khp_A Glutaredoxin; thioredoxin type domain, ssgcid, electron TRAN structural genomics, seattle structural genomics center for infectious disease; NMR {Brucella melitensis}

Probab=96.40  E-value=0.0094  Score=39.20  Aligned_cols=34  Identities=21%  Similarity=0.350  Sum_probs=24.6

Q ss_pred             EEEEEEcCCCChhhHHHHHHHHHHHHHHHHcCcEEEEEeCCC
Q 028030           97 VVVYFYPADETPGCTKQACAFRDSYEKFKKAGAEVIGISGDD  138 (215)
Q Consensus        97 ~ll~f~~a~~C~~C~~~~~~l~~l~~~~~~~~v~vv~vs~d~  138 (215)
                      .++.|+ ..||++|++..+.|.+       .|+.+..+.++.
T Consensus         7 ~v~ly~-~~~C~~C~~~~~~L~~-------~~i~~~~~di~~   40 (92)
T 2khp_A            7 DVIIYT-RPGCPYCARAKALLAR-------KGAEFNEIDASA   40 (92)
T ss_dssp             CEEEEE-CTTCHHHHHHHHHHHH-------TTCCCEEEESTT
T ss_pred             cEEEEE-CCCChhHHHHHHHHHH-------cCCCcEEEECCC
Confidence            466788 9999999987666654       356776777654

>3f4s_A Alpha-DSBA1, putative uncharacterized protein; thioredoxin-fold, oxidoreductase; HET: PGE; 1.55A {Wolbachia pipientis} PDB: 3f4r_A* 3f4t_A*

Probab=96.38  E-value=0.0065  Score=47.56  Aligned_cols=46  Identities=13%  Similarity=0.021  Sum_probs=34.2

Q ss_pred             cCCcCCCcEEEEEEcCCCChhhHHHHHHH-HHHHHHHHHc-CcEEEEEe
Q 028030           89 LSKFKGKPVVVYFYPADETPGCTKQACAF-RDSYEKFKKA-GAEVIGIS  135 (215)
Q Consensus        89 l~~~~gk~~ll~f~~a~~C~~C~~~~~~l-~~l~~~~~~~-~v~vv~vs  135 (215)
                      +.+-.++++|+.|+ ...||+|....+.+ .++.++|.+. .++++...
T Consensus        34 ~G~~~A~vtIvef~-Dy~CP~C~~~~~~~~~~l~~~~~~~g~V~~v~~~   81 (226)
T 3f4s_A           34 LGDPKAPILMIEYA-SLTCYHCSLFHRNVFPKIKEKYIDTGKMLYIFRH   81 (226)
T ss_dssp             ESCTTCSEEEEEEE-CTTCHHHHHHHHHTHHHHHHHHTTTTSEEEEEEE
T ss_pred             cCCCCCCEEEEEEE-CCCCHHHHHHHHHHHHHHHHHcccCCeEEEEEEe
Confidence            33445688999999 99999999988864 6788888532 37776654

>3rhb_A ATGRXC5, glutaredoxin-C5, chloroplastic; thioredoxin fold, thiol-disulfide oxidoreductase, glutaredox oxidoreductase; HET: GSH; 1.20A {Arabidopsis thaliana} PDB: 3rhc_A* 3fz9_A* 3fza_A*

Probab=96.36  E-value=0.0062  Score=41.94  Aligned_cols=32  Identities=22%  Similarity=0.305  Sum_probs=22.4

Q ss_pred             EEEEEcCCCChhhHHHHHHHHHHHHHHHHcCcEEEEEeCC
Q 028030           98 VVYFYPADETPGCTKQACAFRDSYEKFKKAGAEVIGISGD  137 (215)
Q Consensus        98 ll~f~~a~~C~~C~~~~~~l~~l~~~~~~~~v~vv~vs~d  137 (215)
                      |+.|+ .+||++|++..+.|.++       |+.+..+.+|
T Consensus        21 v~vy~-~~~Cp~C~~~~~~L~~~-------~i~~~~~di~   52 (113)
T 3rhb_A           21 VVIYS-KTWCSYCTEVKTLFKRL-------GVQPLVVELD   52 (113)
T ss_dssp             EEEEE-CTTCHHHHHHHHHHHHT-------TCCCEEEEGG
T ss_pred             EEEEE-CCCChhHHHHHHHHHHc-------CCCCeEEEee
Confidence            66688 99999999887777653       4554445443

>4f9z_D Endoplasmic reticulum resident protein 27; thioredoxin fold, ER foldase, ERP57, binding protein; HET: PE3 PE4; 2.20A {Homo sapiens} PDB: 2l4c_A

Probab=96.17  E-value=0.051  Score=42.11  Aligned_cols=77  Identities=10%  Similarity=0.078  Sum_probs=52.4

Q ss_pred             CCcEE-EEEEcCCCChhhHHHHHHHHHHHHHHHHcCcEEEEEeCCCHHHHHHHHHHcCCCeEEEEcCChhHHHHhCCCcc
Q 028030           94 GKPVV-VYFYPADETPGCTKQACAFRDSYEKFKKAGAEVIGISGDDSSSHKAFAKKYRLPYTLLSDEGNKVRKEWGVPAD  172 (215)
Q Consensus        94 gk~~l-l~f~~a~~C~~C~~~~~~l~~l~~~~~~~~v~vv~vs~d~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~g~~~~  172 (215)
                      +.+.+ |.|. ..||..|....+.+++++++++++ +.++.+..++.+                   .+.+.+.||+...
T Consensus       130 ~~~~~~l~f~-~~~~~~~~~~~~~~~~vAk~~k~~-i~F~~vd~~~~~-------------------~~~~l~~fgl~~~  188 (227)
T 4f9z_D          130 VIQIHLLLIM-NKASPEYEENMHRYQKAAKLFQGK-ILFILVDSGMKE-------------------NGKVISFFKLKES  188 (227)
T ss_dssp             SCCEEEEEEE-CTTSTTHHHHHHHHHHHHHHTTTT-CEEEEEETTSGG-------------------GHHHHHHTTCCGG
T ss_pred             CCceEEEEEE-cCCcchHHHHHHHHHHHHHHhhCC-EEEEEeCCccHh-------------------HHHHHHHcCCCcc
Confidence            43444 4555 778999999999999999999876 888888765421                   1234556777621


Q ss_pred             CCCCCCccEEEEEcCCCcEEEEEe
Q 028030          173 FFGSLPGRQTYILDKNGVVQLIYN  196 (215)
Q Consensus       173 ~~g~~p~~~~~lid~~G~v~~~~~  196 (215)
                         ..|  .+.+++..+...+...
T Consensus       189 ---~~P--~~~i~~~~~~~ky~~~  207 (227)
T 4f9z_D          189 ---QLP--ALAIYQTLDDEWDTLP  207 (227)
T ss_dssp             ---GCS--EEEEEESSSCCEEEET
T ss_pred             ---cCC--EEEEEECCCCccccCC
Confidence               178  8888886665444443

>3nzn_A Glutaredoxin; structural genomics, PSI2, MCSG, protein structure initiativ midwest center for structural genomics, rossmann fold; 1.10A {Methanosarcina mazei}

Probab=96.15  E-value=0.019  Score=38.85  Aligned_cols=25  Identities=16%  Similarity=0.195  Sum_probs=20.0

Q ss_pred             CcEEEEEEcCCCChhhHHHHHHHHHH
Q 028030           95 KPVVVYFYPADETPGCTKQACAFRDS  120 (215)
Q Consensus        95 k~~ll~f~~a~~C~~C~~~~~~l~~l  120 (215)
                      +..++.|+ ++||++|++..+.|.++
T Consensus        21 ~~~v~ly~-~~~Cp~C~~ak~~L~~~   45 (103)
T 3nzn_A           21 RGKVIMYG-LSTCVWCKKTKKLLTDL   45 (103)
T ss_dssp             CSCEEEEE-CSSCHHHHHHHHHHHHH
T ss_pred             CCeEEEEc-CCCCchHHHHHHHHHHc
Confidence            44567788 99999999988777764

>3h8q_A Thioredoxin reductase 3; oxidoreductase, structural genomics, structural genomics CON SGC, developmental protein, differentiation; 2.21A {Homo sapiens} SCOP: c.47.1.0

Probab=96.15  E-value=0.036  Score=38.23  Aligned_cols=32  Identities=28%  Similarity=0.274  Sum_probs=22.2

Q ss_pred             EEEEEcCCCChhhHHHHHHHHHHHHHHHHcCcEEEEEeCC
Q 028030           98 VVYFYPADETPGCTKQACAFRDSYEKFKKAGAEVIGISGD  137 (215)
Q Consensus        98 ll~f~~a~~C~~C~~~~~~l~~l~~~~~~~~v~vv~vs~d  137 (215)
                      |+.|+ .+|||+|.+..+.|.++       |+.+-.+.+|
T Consensus        19 v~vy~-~~~Cp~C~~ak~~L~~~-------~i~~~~~dvd   50 (114)
T 3h8q_A           19 VVIFS-KSYCPHSTRVKELFSSL-------GVECNVLELD   50 (114)
T ss_dssp             EEEEE-CTTCHHHHHHHHHHHHT-------TCCCEEEETT
T ss_pred             EEEEE-cCCCCcHHHHHHHHHHc-------CCCcEEEEec
Confidence            44488 99999999877666653       5555555554

>3msz_A Glutaredoxin 1; alpha-beta sandwich, center for structural genomics of infec diseases, csgid, oxidoreductase; HET: GSH; 2.05A {Francisella tularensis subsp} PDB: 3lgc_A*

Probab=95.99  E-value=0.018  Score=37.25  Aligned_cols=22  Identities=18%  Similarity=0.273  Sum_probs=16.6

Q ss_pred             EEEEEEcCCCChhhHHHHHHHHH
Q 028030           97 VVVYFYPADETPGCTKQACAFRD  119 (215)
Q Consensus        97 ~ll~f~~a~~C~~C~~~~~~l~~  119 (215)
                      .++.|+ ..||++|++....|.+
T Consensus         5 ~v~ly~-~~~Cp~C~~~~~~L~~   26 (89)
T 3msz_A            5 KVKIYT-RNGCPYCVWAKQWFEE   26 (89)
T ss_dssp             CEEEEE-CTTCHHHHHHHHHHHH
T ss_pred             EEEEEE-cCCChhHHHHHHHHHH
Confidence            466777 9999999987665544

>3gha_A Disulfide bond formation protein D; BDBD, DSBA-like, TRX-like, oxidoreductase, competence, redox-active center; 1.40A {Bacillus subtilis} PDB: 3eu4_A 3gh9_A 3eu3_A

Probab=95.89  E-value=0.021  Score=43.65  Aligned_cols=47  Identities=17%  Similarity=0.145  Sum_probs=34.3

Q ss_pred             cCCcCCCcEEEEEEcCCCChhhHHHHHHH-HHHHHHHHHc-CcEEEEEeC
Q 028030           89 LSKFKGKPVVVYFYPADETPGCTKQACAF-RDSYEKFKKA-GAEVIGISG  136 (215)
Q Consensus        89 l~~~~gk~~ll~f~~a~~C~~C~~~~~~l-~~l~~~~~~~-~v~vv~vs~  136 (215)
                      +.+-.++++|+.|+ ...||+|....+.+ ..+.++|.+. .++++....
T Consensus        24 ~G~~~a~vtvvef~-D~~CP~C~~~~~~~~~~l~~~~~~~g~v~~~~~~~   72 (202)
T 3gha_A           24 LGKDDAPVTVVEFG-DYKCPSCKVFNSDIFPKIQKDFIDKGDVKFSFVNV   72 (202)
T ss_dssp             ESCTTCSEEEEEEE-CTTCHHHHHHHHHTHHHHHHHTTTTTSEEEEEEEC
T ss_pred             ecCCCCCEEEEEEE-CCCChhHHHHHHHhhHHHHHHhccCCeEEEEEEec
Confidence            33345789999999 99999999888876 4566677542 477776653

>3c1r_A Glutaredoxin-1; oxidized form, oxidoreductase, cytoplasm, electron transport, redox-active center, transport; HET: MES; 2.00A {Saccharomyces cerevisiae} PDB: 3c1s_A* 2jac_A*

Probab=95.86  E-value=0.013  Score=40.93  Aligned_cols=36  Identities=11%  Similarity=0.112  Sum_probs=22.2

Q ss_pred             EEEEEEcCCCChhhHHH-HHHHHHHHHHHHHcCcEEEEEeCC
Q 028030           97 VVVYFYPADETPGCTKQ-ACAFRDSYEKFKKAGAEVIGISGD  137 (215)
Q Consensus        97 ~ll~f~~a~~C~~C~~~-~~~l~~l~~~~~~~~v~vv~vs~d  137 (215)
                      .|+.|+ .+||++|+.. .+.|.++.    ...+.+..+.+|
T Consensus        26 ~Vvvf~-~~~Cp~C~~alk~~L~~~~----~~~i~~~~vdid   62 (118)
T 3c1r_A           26 EIFVAS-KTYCPYCHAALNTLFEKLK----VPRSKVLVLQLN   62 (118)
T ss_dssp             SEEEEE-CSSCHHHHHHHHHHHTTSC----CCGGGEEEEEGG
T ss_pred             cEEEEE-cCCCcCHHHHHHHHHHHcC----CCCCCeEEEECc
Confidence            356688 9999999987 44443321    011666666654

>3ic4_A Glutaredoxin (GRX-1); structural genomics, PSI, MCSG, protein structure initiative, midwest center for structural genomic oxidoreductase; 1.70A {Archaeoglobus fulgidus}

Probab=95.83  E-value=0.021  Score=37.43  Aligned_cols=23  Identities=13%  Similarity=0.313  Sum_probs=17.9

Q ss_pred             EEEEEEcCCCChhhHHHHHHHHHH
Q 028030           97 VVVYFYPADETPGCTKQACAFRDS  120 (215)
Q Consensus        97 ~ll~f~~a~~C~~C~~~~~~l~~l  120 (215)
                      .++.|+ ++||++|++....|.++
T Consensus        13 ~v~ly~-~~~Cp~C~~~~~~L~~~   35 (92)
T 3ic4_A           13 EVLMYG-LSTCPHCKRTLEFLKRE   35 (92)
T ss_dssp             SSEEEE-CTTCHHHHHHHHHHHHH
T ss_pred             eEEEEE-CCCChHHHHHHHHHHHc
Confidence            356677 99999999887777664

>3c7m_A Thiol:disulfide interchange protein DSBA-like; redox protein, periplasm, redox-active center, oxidoreductase; HET: PGE; 1.55A {Escherichia coli} PDB: 3l9u_A

Probab=95.49  E-value=0.029  Score=41.98  Aligned_cols=43  Identities=16%  Similarity=0.145  Sum_probs=35.4

Q ss_pred             CCCcEEEEEEcCCCChhhHHHHHHH-HHHHHHHHHcCcEEEEEeCC
Q 028030           93 KGKPVVVYFYPADETPGCTKQACAF-RDSYEKFKKAGAEVIGISGD  137 (215)
Q Consensus        93 ~gk~~ll~f~~a~~C~~C~~~~~~l-~~l~~~~~~~~v~vv~vs~d  137 (215)
                      .+++++|.|| ...||+|....+.+ .++.+++.. .+++..+..+
T Consensus        16 ~~~~~~ief~-d~~CP~C~~~~~~l~~~l~~~~~~-~v~~~~~~l~   59 (195)
T 3c7m_A           16 NADKTLIKVF-SYACPFCYKYDKAVTGPVSEKVKD-IVAFTPFHLE   59 (195)
T ss_dssp             SCTTEEEEEE-CTTCHHHHHHHHHTHHHHHHHTTT-TCEEEEEECT
T ss_pred             CCCcEEEEEE-eCcCcchhhCcHHHHHHHHHhCCC-ceEEEEEecC
Confidence            4678999999 89999999999999 888888875 3777777643

>1wik_A Thioredoxin-like protein 2; picot homology 2 domain, picot protein, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: c.47.1.1

Probab=95.34  E-value=0.061  Score=36.67  Aligned_cols=29  Identities=7%  Similarity=-0.060  Sum_probs=21.5

Q ss_pred             CCChhhHHHHHHHHHHHHHHHHcCcEEEEEeCCCHH
Q 028030          105 DETPGCTKQACAFRDSYEKFKKAGAEVIGISGDDSS  140 (215)
Q Consensus       105 ~~C~~C~~~~~~l~~l~~~~~~~~v~vv~vs~d~~~  140 (215)
                      .||++|.+....|.++       |+.+..+.++...
T Consensus        28 ~~Cp~C~~ak~~L~~~-------~i~~~~vdi~~~~   56 (109)
T 1wik_A           28 AKCGFSKQILEILNST-------GVEYETFDILEDE   56 (109)
T ss_dssp             CCSSTHHHHHHHHHHT-------CSCEEEEESSSCH
T ss_pred             CCCchHHHHHHHHHHc-------CCCeEEEECCCCH
Confidence            8999999887666543       6888888776433

>3kzq_A Putative uncharacterized protein VP2116; protein with unknown function, STRU genomics, PSI, MCSG, protein structure initiative; HET: PG6; 2.10A {Vibrio parahaemolyticus}

Probab=95.11  E-value=0.09  Score=40.04  Aligned_cols=37  Identities=5%  Similarity=-0.050  Sum_probs=29.0

Q ss_pred             EEEEEEcCCCChhhHHHHHHHHHHHHHHHHcCcEEEEEe
Q 028030           97 VVVYFYPADETPGCTKQACAFRDSYEKFKKAGAEVIGIS  135 (215)
Q Consensus        97 ~ll~f~~a~~C~~C~~~~~~l~~l~~~~~~~~v~vv~vs  135 (215)
                      .|.+|+ -.-||.|-...+.|.++.+++++ +++|....
T Consensus         4 ~I~~~~-D~~CP~cy~~~~~l~~l~~~~~~-~v~v~~~p   40 (208)
T 3kzq_A            4 KLYYVH-DPMCSWCWGYKPTIEKLKQQLPG-VIQFEYVV   40 (208)
T ss_dssp             EEEEEE-CTTCHHHHHHHHHHHHHHHHSCT-TSEEEEEE
T ss_pred             EEEEEE-CCCCchhhhhhHHHHHHHHhCCC-CceEEEEe
Confidence            444555 88899999999999999998864 57777665

>3tdg_A DSBG, putative uncharacterized protein; thioredoxin fold, reductase, oxidoreductase; HET: P6G; 2.10A {Helicobacter pylori}

Probab=94.77  E-value=0.062  Score=43.19  Aligned_cols=40  Identities=13%  Similarity=0.264  Sum_probs=32.5

Q ss_pred             CCCcEEEEEEcCCCChhhHHHHHHHHHHHHHHHHcCcEEEEEeC
Q 028030           93 KGKPVVVYFYPADETPGCTKQACAFRDSYEKFKKAGAEVIGISG  136 (215)
Q Consensus        93 ~gk~~ll~f~~a~~C~~C~~~~~~l~~l~~~~~~~~v~vv~vs~  136 (215)
                      .|+.+|++|+ -..||+|++..+.+.++.++   -.|.++.+..
T Consensus       146 ~gk~~I~vFt-Dp~CPYCkkl~~~l~~~l~~---~~Vr~i~~Pi  185 (273)
T 3tdg_A          146 NKDKILYIVS-DPMCPHCQKELTKLRDHLKE---NTVRMVVVGW  185 (273)
T ss_dssp             GTTCEEEEEE-CTTCHHHHHHHHTHHHHHHH---CEEEEEECCC
T ss_pred             CCCeEEEEEE-CcCChhHHHHHHHHHHHhhC---CcEEEEEeec
Confidence            4789999999 99999999999999976543   3477777665

>1aba_A Glutaredoxin; electron transport; HET: MES; 1.45A {Enterobacteria phage T4} SCOP: c.47.1.1 PDB: 1aaz_A 1de1_A 1de2_A

Probab=94.61  E-value=0.14  Score=33.10  Aligned_cols=32  Identities=9%  Similarity=-0.070  Sum_probs=22.4

Q ss_pred             EEEEEcCC----CChhhHHHHHHHHHHHHHHHHcCcEEEEEeCC
Q 028030           98 VVYFYPAD----ETPGCTKQACAFRDSYEKFKKAGAEVIGISGD  137 (215)
Q Consensus        98 ll~f~~a~----~C~~C~~~~~~l~~l~~~~~~~~v~vv~vs~d  137 (215)
                      ++.|+ .+    ||+.|.+....|++       .|+.+-.+.++
T Consensus         2 v~iY~-~~~~~~~Cp~C~~ak~~L~~-------~gi~y~~idI~   37 (87)
T 1aba_A            2 FKVYG-YDSNIHKCGPCDNAKRLLTV-------KKQPFEFINIM   37 (87)
T ss_dssp             EEEEE-CCTTTSCCHHHHHHHHHHHH-------TTCCEEEEESC
T ss_pred             EEEEE-eCCCCCcCccHHHHHHHHHH-------cCCCEEEEEee
Confidence            44566 88    99999977555544       46777777665

>2ct6_A SH3 domain-binding glutamic acid-rich-like protein 2; SH3BGRL2,FASH3, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=94.61  E-value=0.18  Score=34.49  Aligned_cols=49  Identities=12%  Similarity=0.035  Sum_probs=27.4

Q ss_pred             EEEEEcCCCChhhHHHHHHHHHHHHHHHHcCcEEEEEeCCCHHHHHHHHHH
Q 028030           98 VVYFYPADETPGCTKQACAFRDSYEKFKKAGAEVIGISGDDSSSHKAFAKK  148 (215)
Q Consensus        98 ll~f~~a~~C~~C~~~~~~l~~l~~~~~~~~v~vv~vs~d~~~~~~~~~~~  148 (215)
                      |+.|. .++|+.|.. ...-++..+-+.+.|+.+..+.++...+.++.+.+
T Consensus        10 V~vy~-~~~C~~C~~-~~~~~~ak~~L~~~gi~y~~vdI~~~~~~~~~l~~   58 (111)
T 2ct6_A           10 IRVFI-ASSSGFVAI-KKKQQDVVRFLEANKIEFEEVDITMSEEQRQWMYK   58 (111)
T ss_dssp             EEEEE-CSSCSCHHH-HHHHHHHHHHHHHTTCCEEEEETTTCHHHHHHHHH
T ss_pred             EEEEE-cCCCCCccc-chhHHHHHHHHHHcCCCEEEEECCCCHHHHHHHHH
Confidence            55666 899999982 11111112223445788888887654444444443

>3ctg_A Glutaredoxin-2; reduced form, electron transport, mitochondrion, redox-activ transit peptide, transport, oxidoreductase; 1.50A {Saccharomyces cerevisiae} PDB: 3ctf_A 3d4m_A 3d5j_A*

Probab=94.55  E-value=0.034  Score=39.43  Aligned_cols=21  Identities=19%  Similarity=0.314  Sum_probs=16.0

Q ss_pred             EEEEEcCCCChhhHHH-HHHHHH
Q 028030           98 VVYFYPADETPGCTKQ-ACAFRD  119 (215)
Q Consensus        98 ll~f~~a~~C~~C~~~-~~~l~~  119 (215)
                      |+.|+ .+||++|... .+.|.+
T Consensus        39 Vvvy~-~~~Cp~C~~a~k~~L~~   60 (129)
T 3ctg_A           39 VFVAA-KTYCPYCKATLSTLFQE   60 (129)
T ss_dssp             EEEEE-CTTCHHHHHHHHHHHTT
T ss_pred             EEEEE-CCCCCchHHHHHHHHHh
Confidence            66788 9999999977 555544

>3fz4_A Putative arsenate reductase; APC61768, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.38A {Streptococcus mutans UA159} SCOP: c.47.1.0

Probab=93.97  E-value=0.14  Score=35.74  Aligned_cols=63  Identities=13%  Similarity=0.205  Sum_probs=46.2

Q ss_pred             EEEcCCCChhhHHHHHHHHHHHHHHHHcCcEEEEEeC----CCHHHHHHHHHHcCCCeEEEEcCChhHHHHhCC
Q 028030          100 YFYPADETPGCTKQACAFRDSYEKFKKAGAEVIGISG----DDSSSHKAFAKKYRLPYTLLSDEGNKVRKEWGV  169 (215)
Q Consensus       100 ~f~~a~~C~~C~~~~~~l~~l~~~~~~~~v~vv~vs~----d~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~g~  169 (215)
                      .+|...+|+.|++...-|.+       +|+.+-.+..    .+.+++++|++..|.++.-+....+..++.+++
T Consensus         6 ~iY~~~~C~~c~ka~~~L~~-------~gi~~~~~di~~~~~~~~eL~~~l~~~g~~~~~l~n~~~~~~k~l~l   72 (120)
T 3fz4_A            6 TFYEYPKCSTCRRAKAELDD-------LAWDYDAIDIKKNPPAASLIRNWLENSGLELKKFFNTSGQSYRALGL   72 (120)
T ss_dssp             EEEECSSCHHHHHHHHHHHH-------HTCCEEEEETTTSCCCHHHHHHHHHHSCCCGGGGBCTTSHHHHHTTH
T ss_pred             EEEeCCCChHHHHHHHHHHH-------cCCceEEEEeccCchhHHHHHHHHHHcCCCHHHHhCCCCcchhhcCc
Confidence            34448999999988666554       4677666654    356899999999998876666677777777665

>3l78_A Regulatory protein SPX; transcription, transcriptional factor, disulfide bond, redox-active center, transcription regulati; 1.90A {Streptococcus mutans} SCOP: c.47.1.12

Probab=93.61  E-value=0.14  Score=35.68  Aligned_cols=64  Identities=8%  Similarity=0.007  Sum_probs=47.0

Q ss_pred             EEEEcCCCChhhHHHHHHHHHHHHHHHHcCcEEEEEeCC----CHHHHHHHHHHcCCCeEEEEcCChhHHHHhCCC
Q 028030           99 VYFYPADETPGCTKQACAFRDSYEKFKKAGAEVIGISGD----DSSSHKAFAKKYRLPYTLLSDEGNKVRKEWGVP  170 (215)
Q Consensus        99 l~f~~a~~C~~C~~~~~~l~~l~~~~~~~~v~vv~vs~d----~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~g~~  170 (215)
                      ..|. ..+|+.|++...-|.       ++|+.+..+...    +.+++++|++..+.++.-+....+..++.++..
T Consensus         3 ~iY~-~~~C~~c~ka~~~L~-------~~gi~~~~~di~~~~~~~~el~~~l~~~~~~~~~l~n~~~~~~k~l~~~   70 (120)
T 3l78_A            3 TLFL-SPSCTSCRKARAWLN-------RHDVVFQEHNIMTSPLSRDELLKILSYTENGTEDIISTRSKVFQKLDID   70 (120)
T ss_dssp             EEEE-CSSCHHHHHHHHHHH-------HTTCCEEEEETTTSCCCHHHHHHHHHHCSSTHHHHBCTTCHHHHHTTCC
T ss_pred             EEEe-CCCCHHHHHHHHHHH-------HcCCCeEEEecccCCCcHHHHHHHHhhcCCCHHHhhcCCcHHHHHcCCC
Confidence            3444 899999998865554       357777766652    568999999998888766666777777777754

>3bci_A Disulfide bond protein A; thiol-disulfide oxidoreductase, redox protein, protein folding, redox active centre; 1.81A {Staphylococcus aureus} PDB: 3bd2_A 3bck_A

Probab=93.43  E-value=0.15  Score=37.92  Aligned_cols=42  Identities=19%  Similarity=0.279  Sum_probs=32.4

Q ss_pred             CCCcEEEEEEcCCCChhhHHHHHHH-HHHHHHHHHc-CcEEEEEe
Q 028030           93 KGKPVVVYFYPADETPGCTKQACAF-RDSYEKFKKA-GAEVIGIS  135 (215)
Q Consensus        93 ~gk~~ll~f~~a~~C~~C~~~~~~l-~~l~~~~~~~-~v~vv~vs  135 (215)
                      .++++|+.|+ ...||+|....+.+ .++.++|.+. +++++...
T Consensus        10 ~a~~~i~~f~-D~~Cp~C~~~~~~l~~~l~~~~~~~~~v~~~~~~   53 (186)
T 3bci_A           10 NGKPLVVVYG-DYKCPYCKELDEKVMPKLRKNYIDNHKVEYQFVN   53 (186)
T ss_dssp             -CCCEEEEEE-CTTCHHHHHHHHHHHHHHHHHTTTTTSSEEEEEE
T ss_pred             CCCeEEEEEE-CCCChhHHHHHHHHHHHHHHHhccCCeEEEEEEe
Confidence            4678899998 99999999999998 4677778643 47777654

>1z3e_A Regulatory protein SPX; bacterial transcription regulation, disulfide stress; 1.50A {Bacillus subtilis} SCOP: c.47.1.12 PDB: 3gfk_A 3ihq_A

Probab=93.33  E-value=0.14  Score=36.37  Aligned_cols=65  Identities=11%  Similarity=0.059  Sum_probs=47.3

Q ss_pred             EEEEEcCCCChhhHHHHHHHHHHHHHHHHcCcEEEEEeCC----CHHHHHHHHHHcCCCeEEEEcCChhHHHHhCCC
Q 028030           98 VVYFYPADETPGCTKQACAFRDSYEKFKKAGAEVIGISGD----DSSSHKAFAKKYRLPYTLLSDEGNKVRKEWGVP  170 (215)
Q Consensus        98 ll~f~~a~~C~~C~~~~~~l~~l~~~~~~~~v~vv~vs~d----~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~g~~  170 (215)
                      +..|+ ..+|+.|++....|.+       .|+.+..+.++    +.++++++++..+.++.-+....+..++..+..
T Consensus         3 i~lY~-~~~C~~C~ka~~~L~~-------~gi~y~~~di~~~~~~~~el~~~l~~~~~~~~~l~n~~~~~~k~l~~~   71 (132)
T 1z3e_A            3 VTLYT-SPSCTSCRKARAWLEE-------HEIPFVERNIFSEPLSIDEIKQILRMTEDGTDEIISTRSKVFQKLNVN   71 (132)
T ss_dssp             EEEEE-CTTCHHHHHHHHHHHH-------TTCCEEEEETTTSCCCHHHHHHHHHTCSSCGGGTBCTTSHHHHHHCCC
T ss_pred             EEEEe-CCCChHHHHHHHHHHH-------cCCceEEEEccCCCccHHHHHHHHHHcCCCHHHhhcCCchHHHhcCcc
Confidence            44555 8999999987666654       46777666653    347899999988887766667777777777754

>3q6o_A Sulfhydryl oxidase 1; protein disulfide isomerase, thioredoxin, thioredoxin fold, oxidoreductase, reductive methylation; HET: MLY; 2.05A {Homo sapiens}

Probab=93.09  E-value=0.087  Score=41.05  Aligned_cols=53  Identities=19%  Similarity=0.301  Sum_probs=38.5

Q ss_pred             CCeEEEEcCChhHHHHhCCCccCCCCCCccEEEEEcCCCcEEEEEeCCCCCCccHHHHHHH
Q 028030          151 LPYTLLSDEGNKVRKEWGVPADFFGSLPGRQTYILDKNGVVQLIYNNQFQPEKHIDETLKF  211 (215)
Q Consensus       151 ~~~~~~~d~~~~~~~~~g~~~~~~g~~p~~~~~lid~~G~v~~~~~g~~~~~~~~~~il~~  211 (215)
                      +.+..+.+.+.++.+.||+..     +|  +.++++++|++....... .....+...|+.
T Consensus       185 i~v~~~~~~~~~l~~~f~v~~-----~P--slvl~~~~g~~~~~~~~~-~~r~~~~~~l~~  237 (244)
T 3q6o_A          185 VAVRRVLNTEANVVRKFGVTD-----FP--SCYLLFRNGSVSRVPVLM-ESRSFYTAYLQR  237 (244)
T ss_dssp             EEEEEEETTCHHHHHHHTCCC-----SS--EEEEEETTSCEEECCCSS-SSHHHHHHHHHT
T ss_pred             eEEEEEeCchHHHHHHcCCCC-----CC--eEEEEeCCCCeEeecccc-ccHHHHHHHHHh
Confidence            346666777899999999997     89  999999999998765442 223444555443

>3zyw_A Glutaredoxin-3; metal binding protein; 1.84A {Homo sapiens}

Probab=93.07  E-value=0.12  Score=35.46  Aligned_cols=35  Identities=0%  Similarity=-0.190  Sum_probs=22.1

Q ss_pred             CCChhhHHHHHHHHHHHHHHHHcCcEEEEEeCCCHHHHHHHH
Q 028030          105 DETPGCTKQACAFRDSYEKFKKAGAEVIGISGDDSSSHKAFA  146 (215)
Q Consensus       105 ~~C~~C~~~~~~l~~l~~~~~~~~v~vv~vs~d~~~~~~~~~  146 (215)
                      +||++|.+....|.+       .|+.+..+.++...+.++.+
T Consensus        29 ~~Cp~C~~ak~~L~~-------~gi~y~~~di~~d~~~~~~l   63 (111)
T 3zyw_A           29 PRCGFSKQMVEILHK-------HNIQFSSFDIFSDEEVRQGL   63 (111)
T ss_dssp             BSSHHHHHHHHHHHH-------TTCCCEEEEGGGCHHHHHHH
T ss_pred             CcchhHHHHHHHHHH-------cCCCeEEEECcCCHHHHHHH
Confidence            899999987666654       36666666665333333333

>1t1v_A SH3BGRL3, SH3 domain-binding glutamic acid-rich protein-LIK; glutaredoxin, thioredoxin fold, protein 3D-structure, X-RAY crystallography; 1.60A {Mus musculus} SCOP: c.47.1.14 PDB: 1j0f_A 1sj6_A

Probab=92.99  E-value=0.43  Score=31.23  Aligned_cols=45  Identities=2%  Similarity=-0.059  Sum_probs=23.4

Q ss_pred             EEEEEcCCCChhhHHHHHHHHHHHHHHHHcCcEEEEEeCCCHHHHHH
Q 028030           98 VVYFYPADETPGCTKQACAFRDSYEKFKKAGAEVIGISGDDSSSHKA  144 (215)
Q Consensus        98 ll~f~~a~~C~~C~~~~~~l~~l~~~~~~~~v~vv~vs~d~~~~~~~  144 (215)
                      |+.|. .++|+.|... ..-.+..+-+.+.|+.+..+.++...+.++
T Consensus         4 v~ly~-~~~C~~c~~~-~~~~~ak~~L~~~~i~~~~~di~~~~~~~~   48 (93)
T 1t1v_A            4 LRVYS-TSVTGSREIK-SQQSEVTRILDGKRIQYQLVDISQDNALRD   48 (93)
T ss_dssp             EEEEE-CSSCSCHHHH-HHHHHHHHHHHHTTCCCEEEETTSCHHHHH
T ss_pred             EEEEE-cCCCCCchhh-HHHHHHHHHHHHCCCceEEEECCCCHHHHH
Confidence            45566 8999999410 000111122334577777777754433333

>3gkx_A Putative ARSC family related protein; ARSC family protein, structural genomi 2, protein structure initiative; 2.20A {Bacteroides fragilis} SCOP: c.47.1.0

Probab=92.59  E-value=0.14  Score=35.82  Aligned_cols=62  Identities=18%  Similarity=0.113  Sum_probs=45.0

Q ss_pred             EEcCCCChhhHHHHHHHHHHHHHHHHcCcEEEEEeC----CCHHHHHHHHHHcCCCeEEEEcCChhHHHHhCC
Q 028030          101 FYPADETPGCTKQACAFRDSYEKFKKAGAEVIGISG----DDSSSHKAFAKKYRLPYTLLSDEGNKVRKEWGV  169 (215)
Q Consensus       101 f~~a~~C~~C~~~~~~l~~l~~~~~~~~v~vv~vs~----d~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~g~  169 (215)
                      +|...+|+.|++...-|.       ++|+.+-.+..    .+.+++++|++..++++.-+....+..++.+++
T Consensus         8 iY~~p~C~~c~ka~~~L~-------~~gi~~~~~di~~~~~~~~eL~~~l~~~g~~~~~l~n~~~~~~k~l~l   73 (120)
T 3gkx_A            8 FLQYPACSTCQKAKKWLI-------ENNIEYTNRLIVDDNPTVEELKAWIPLSGLPVKKFFNTSGVVYKELKL   73 (120)
T ss_dssp             EEECTTCHHHHHHHHHHH-------HTTCCCEEEETTTTCCCHHHHHHHHHHHTSCGGGGBCTTSHHHHHTTH
T ss_pred             EEECCCChHHHHHHHHHH-------HcCCceEEEecccCcCCHHHHHHHHHHcCCCHHHeEeCCCchhhhcCc
Confidence            343899999998865554       34666666654    356899999999998876666667777777664

>3rdw_A Putative arsenate reductase; structural genomics, center for structural genomics of infec diseases, csgid, oxidoreductase; 2.20A {Yersinia pestis}

Probab=92.57  E-value=0.18  Score=35.30  Aligned_cols=64  Identities=8%  Similarity=0.044  Sum_probs=46.4

Q ss_pred             EEEcCCCChhhHHHHHHHHHHHHHHHHcCcEEEEEeC----CCHHHHHHHHHHcCC-CeEEEEcCChhHHHHhCCC
Q 028030          100 YFYPADETPGCTKQACAFRDSYEKFKKAGAEVIGISG----DDSSSHKAFAKKYRL-PYTLLSDEGNKVRKEWGVP  170 (215)
Q Consensus       100 ~f~~a~~C~~C~~~~~~l~~l~~~~~~~~v~vv~vs~----d~~~~~~~~~~~~~~-~~~~~~d~~~~~~~~~g~~  170 (215)
                      .+|...+|+.|++...-|.       ++|+.+..+..    .+.+++++|++..|+ +..-+....+..++.+++.
T Consensus         8 ~iY~~p~C~~c~ka~~~L~-------~~gi~~~~~di~~~~~~~~eL~~~l~~~g~~~~~~l~n~~~~~~k~l~l~   76 (121)
T 3rdw_A            8 TIYHNPRCSKSRETLALVE-------QQGITPQVVLYLETPPSVDKLKELLQQLGFSDARQLMRTKEDLYKTLNLD   76 (121)
T ss_dssp             EEECCTTCHHHHHHHHHHH-------TTTCCCEEECTTTSCCCHHHHHHHHHHTTCSSGGGGBCTTSHHHHHTTTT
T ss_pred             EEEECCCCHHHHHHHHHHH-------HcCCCcEEEeeccCCCcHHHHHHHHHhcCCcCHHHHhcCCChhhhhcCcc
Confidence            3444889999998865554       45777666654    256899999999998 7655566677778877764

>3gx8_A Monothiol glutaredoxin-5, mitochondrial; TRX fold, electron transport, mitochondrion, redox-active center, transit peptide, transport; 1.67A {Saccharomyces cerevisiae}

Probab=92.47  E-value=0.41  Score=33.27  Aligned_cols=35  Identities=6%  Similarity=-0.029  Sum_probs=22.9

Q ss_pred             CChhhHHHHHHHHHHHHHHHHcCcE---EEEEeCCCHHHHHHHHH
Q 028030          106 ETPGCTKQACAFRDSYEKFKKAGAE---VIGISGDDSSSHKAFAK  147 (215)
Q Consensus       106 ~C~~C~~~~~~l~~l~~~~~~~~v~---vv~vs~d~~~~~~~~~~  147 (215)
                      ||++|.+....|.++       |+.   +..+.++...++++.+.
T Consensus        30 ~Cp~C~~ak~lL~~~-------gv~~~~~~~~dv~~~~~~~~~l~   67 (121)
T 3gx8_A           30 KCGFSRATIGLLGNQ-------GVDPAKFAAYNVLEDPELREGIK   67 (121)
T ss_dssp             CTTHHHHHHHHHHHH-------TBCGGGEEEEECTTCHHHHHHHH
T ss_pred             CCccHHHHHHHHHHc-------CCCcceEEEEEecCCHHHHHHHH
Confidence            999999887766664       565   66666654444444443

>1pn0_A Phenol 2-monooxygenase; two dimers, TLS refinement, oxidoreductase; HET: FAD; 1.70A {Trichosporon cutaneum} SCOP: c.3.1.2 c.47.1.10 d.16.1.2 PDB: 1foh_A*

Probab=92.44  E-value=0.71  Score=41.65  Aligned_cols=124  Identities=15%  Similarity=0.212  Sum_probs=71.9

Q ss_pred             ccCCCCCCCCCeEEeC-CCCCeeecCCc-C--CCcEEEEEEcCCC-ChhhHHHHHHHHHHH-------HHHHH------c
Q 028030           66 AKVSKGQAPPSFTLKD-QEGRNVSLSKF-K--GKPVVVYFYPADE-TPGCTKQACAFRDSY-------EKFKK------A  127 (215)
Q Consensus        66 ~~~~~g~~~P~f~l~~-~~g~~~~l~~~-~--gk~~ll~f~~a~~-C~~C~~~~~~l~~l~-------~~~~~------~  127 (215)
                      ..+.+|..+|++.+.. .+|+++.+.++ .  |+++||.|- ..- .+.+...+..+.+..       .+|..      .
T Consensus       477 ~~~~~G~r~p~~~~~~~~~g~~~~l~~~l~~~g~~~ll~~~-~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~  555 (665)
T 1pn0_A          477 KNCVVGTRFKSQPVVRHSEGLWMHFGDRLVTDGRFRIIVFA-GKATDATQMSRIKKFAAYLDSENSVISRYTPKGADRNS  555 (665)
T ss_dssp             TTSCTTSBCCCCEEEETTTTEEEEGGGGCCCSSCEEEEEEE-ECTTSHHHHHHHHHHHHHHHSTTSHHHHHSBTTSCTTS
T ss_pred             CCCCCcCCCCCCeEEecCCCcEEEHhHhhccCCCEEEEEec-CCcccchhHHHHHHHHHHhhccccHHhhcCCcccCccc
Confidence            4567999999999876 58988888884 3  799999987 432 222333333333321       22311      1


Q ss_pred             CcEEEEEeCCCHH--HHHHHHH-Hc--CCC-eEEEEcC------ChhHHHHhCCCccCCCCCCccEEEEEcCCCcEEEEE
Q 028030          128 GAEVIGISGDDSS--SHKAFAK-KY--RLP-YTLLSDE------GNKVRKEWGVPADFFGSLPGRQTYILDKNGVVQLIY  195 (215)
Q Consensus       128 ~v~vv~vs~d~~~--~~~~~~~-~~--~~~-~~~~~d~------~~~~~~~~g~~~~~~g~~p~~~~~lid~~G~v~~~~  195 (215)
                      -++++.|......  ++..+-. .+  +.. +.++.|.      .+.+++.||+..+    -.  .++||-|||-|-+..
T Consensus       556 ~~~~~~i~~~~~~~~~~~~~p~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~g~~~~----~g--~~vlvRPD~yV~~~~  629 (665)
T 1pn0_A          556 RIDVITIHSCHRDDIEMHDFPAPALHPKWQYDFIYADCDSWHHPHPKSYQAWGVDET----KG--AVVVVRPDGYTSLVT  629 (665)
T ss_dssp             SEEEEEEESSCTTSCCGGGSCTTTTSCTTCCSSEEECSCCSSSCCCCHHHHHTBCTT----TC--EEEEECTTSBEEEEE
T ss_pred             eeEEEEEecCCCCccchhhCCHHHcCcccchheEeecCcccccccccHHHHcCCCCC----Cc--eEEEECCCCcEEEEe
Confidence            2777777432111  0111100 00  112 2345563      4678999998631    13  789999999998776


Q ss_pred             e
Q 028030          196 N  196 (215)
Q Consensus       196 ~  196 (215)
                      .
T Consensus       630 ~  630 (665)
T 1pn0_A          630 D  630 (665)
T ss_dssp             C
T ss_pred             c
Confidence            5

>2wci_A Glutaredoxin-4; redox-active center, iron-sulfur cluster scaffolder, Fe2S2, homodimer, transport, glutathione, thioredoxin fold; HET: GSH; 1.90A {Escherichia coli} PDB: 1yka_A

Probab=92.38  E-value=0.19  Score=35.92  Aligned_cols=34  Identities=12%  Similarity=0.153  Sum_probs=22.4

Q ss_pred             cEEEEEEcC----CCChhhHHHHHHHHHHHHHHHHcCcEEEEEeCC
Q 028030           96 PVVVYFYPA----DETPGCTKQACAFRDSYEKFKKAGAEVIGISGD  137 (215)
Q Consensus        96 ~~ll~f~~a----~~C~~C~~~~~~l~~l~~~~~~~~v~vv~vs~d  137 (215)
                      .++|+.+ +    .||++|.+....|.+       .|+.+..+.++
T Consensus        36 ~Vvvy~k-s~~~~~~Cp~C~~ak~~L~~-------~gv~y~~vdI~   73 (135)
T 2wci_A           36 PILLYMK-GSPKLPSCGFSAQAVQALAA-------CGERFAYVDIL   73 (135)
T ss_dssp             SEEEEES-BCSSSBSSHHHHHHHHHHHT-------TCSCCEEEEGG
T ss_pred             CEEEEEE-ecCCCCCCccHHHHHHHHHH-------cCCceEEEECC
Confidence            4555444 4    799999987666644       36776667664

>3gn3_A Putative protein-disulfide isomerase; MCSG, PSI, structural GEN protein structure initiative, midwest center for structural genomics; 2.50A {Pseudomonas syringae PV}

Probab=92.33  E-value=0.18  Score=37.76  Aligned_cols=42  Identities=14%  Similarity=0.066  Sum_probs=32.7

Q ss_pred             CCCcEEEEEEcCCCChhhHHHHHHHHHHHHHHHHcCcEEEEEe
Q 028030           93 KGKPVVVYFYPADETPGCTKQACAFRDSYEKFKKAGAEVIGIS  135 (215)
Q Consensus        93 ~gk~~ll~f~~a~~C~~C~~~~~~l~~l~~~~~~~~v~vv~vs  135 (215)
                      .++++|+.|. -..||+|.+..+.+.++.+++....++++.-.
T Consensus        13 ~a~vtiv~f~-D~~Cp~C~~~~~~~~~~l~~~~~g~v~~v~r~   54 (182)
T 3gn3_A           13 HGPRLFEVFL-EPTCPFSVKAFFKLDDLLAQAGEDNVTVRIRL   54 (182)
T ss_dssp             CCSEEEEEEE-CTTCHHHHHHHTTHHHHHHHHCTTTEEEEEEE
T ss_pred             CCCEEEEEEE-CCCCHhHHHHHHHHHHHHHHhCCCCEEEEEEE
Confidence            3678899998 88999999999999887777622247777654

>2dkh_A 3-hydroxybenzoate hydroxylase; flavoprotein, monooxygenase, complex, oxidoreductase; HET: FAD 3HB; 1.80A {Comamonas testosteroni} PDB: 2dki_A*

Probab=92.03  E-value=0.55  Score=42.09  Aligned_cols=125  Identities=10%  Similarity=0.048  Sum_probs=72.8

Q ss_pred             ccCCCCCCCCCeEEeC-CCCCeeecCCc---CCCcEEEEEEcCCCChhhH-HHHHHHHHHH--------HHHHHc-----
Q 028030           66 AKVSKGQAPPSFTLKD-QEGRNVSLSKF---KGKPVVVYFYPADETPGCT-KQACAFRDSY--------EKFKKA-----  127 (215)
Q Consensus        66 ~~~~~g~~~P~f~l~~-~~g~~~~l~~~---~gk~~ll~f~~a~~C~~C~-~~~~~l~~l~--------~~~~~~-----  127 (215)
                      ..+.+|..+|+..+.. .+|+.+.+.++   .|+++||.|- ....+.+. ..+..+.+..        .+|...     
T Consensus       465 ~~~~~G~r~p~~~~~~~~~g~~~~l~~~~~~~g~~~ll~~~-~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~  543 (639)
T 2dkh_A          465 SGFTVGMRFHSAPVVRVCDAKPVQLGHCGKADGRWRLYAFA-AQNDLAQPESGLLALCRFLEGDAASPLRRFTPAGQDID  543 (639)
T ss_dssp             TTSCTTSBCCCCEEEETTTCCEEEGGGGCCSSSCEEEEEEC-CTTTTTCTTSHHHHHHHHHHHCTTCHHHHHSCTTSCTT
T ss_pred             CCCCCcCCCCCCeEEecCCCCEEEHHHhhccCCCEEEEEec-CCCCchhhHHHHHHHHHHHhhCCccHHHhcCCCCCCcC
Confidence            3467899999999875 58999888884   3799999986 44333232 2333333221        234211     


Q ss_pred             -CcEEEEEeCCCH---------HHHHHHHHHcCC-C-eEEEEcCC----hhHHHHhCCCccCCCCCCccEEEEEcCCCcE
Q 028030          128 -GAEVIGISGDDS---------SSHKAFAKKYRL-P-YTLLSDEG----NKVRKEWGVPADFFGSLPGRQTYILDKNGVV  191 (215)
Q Consensus       128 -~v~vv~vs~d~~---------~~~~~~~~~~~~-~-~~~~~d~~----~~~~~~~g~~~~~~g~~p~~~~~lid~~G~v  191 (215)
                       -++++.|.....         +..+.+..++++ + ..++.|..    +.+++.||+..+    -.  .++||-|||-|
T Consensus       544 ~~~~~~~i~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~g~~~~----~g--~~v~vRPD~yv  617 (639)
T 2dkh_A          544 SIFDLRAVFPQAYTEVALETLPALLLPPKGQLGMIDYEKVFSPDLKNAGQDIFELRGIDRQ----QG--ALVVVRPDQYV  617 (639)
T ss_dssp             SSEEEEEECSSCGGGCCGGGSCGGGSCEETTTTEECCCSEEECCCSSTTCCHHHHTTBCTT----TC--EEEEECTTSBE
T ss_pred             ceEEEEEEecCCCCccchhhCcHhhCCcccccccccceeEEeCCCcccccchHHHhCCCCC----ce--EEEEECCCCce
Confidence             267777743321         111111112222 2 23456632    568999998631    23  78999999999


Q ss_pred             EEEEeC
Q 028030          192 QLIYNN  197 (215)
Q Consensus       192 ~~~~~g  197 (215)
                      -+....
T Consensus       618 ~~~~~~  623 (639)
T 2dkh_A          618 AQVLPL  623 (639)
T ss_dssp             EEEECT
T ss_pred             EEeech
Confidence            776543

>3f0i_A Arsenate reductase; structural genomics, IDP01300, vibrio CH center for structural genomics of infectious diseases, CSGI oxidoreductase; HET: MSE; 1.88A {Vibrio cholerae}

Probab=91.98  E-value=0.18  Score=35.15  Aligned_cols=66  Identities=12%  Similarity=0.100  Sum_probs=48.0

Q ss_pred             EEEEcCCCChhhHHHHHHHHHHHHHHHHcCcEEEEEeC----CCHHHHHHHHHHcCCC-eEEEEcCChhHHHHhCCCc
Q 028030           99 VYFYPADETPGCTKQACAFRDSYEKFKKAGAEVIGISG----DDSSSHKAFAKKYRLP-YTLLSDEGNKVRKEWGVPA  171 (215)
Q Consensus        99 l~f~~a~~C~~C~~~~~~l~~l~~~~~~~~v~vv~vs~----d~~~~~~~~~~~~~~~-~~~~~d~~~~~~~~~g~~~  171 (215)
                      |.+|....|+.|++...-|.+       +|+.+-.+..    -+.+++++|++..|++ ..-+....+..++.+++..
T Consensus         6 i~iY~~p~C~~c~ka~~~L~~-------~gi~~~~~di~~~~~t~~eL~~~l~~~g~~~~~~l~n~~~~~~k~l~l~~   76 (119)
T 3f0i_A            6 VVIYHNPKCSKSRETLALLEN-------QGIAPQVIKYLETSPSVEELKRLYQQLGLNEVRAMMRCKEELYKELNLGD   76 (119)
T ss_dssp             CEEECCTTCHHHHHHHHHHHH-------TTCCCEEECHHHHCCCHHHHHHHHHHHTCSSGGGGBCTTSHHHHHTTTTC
T ss_pred             EEEEECCCChHHHHHHHHHHH-------cCCceEEEEeccCcCcHHHHHHHHHHcCCccHHHHhcCCCchhhhcCccc
Confidence            344548899999988666553       4666665543    4678999999999988 6556667778888877653

>3ipz_A Monothiol glutaredoxin-S14, chloroplastic; electron transport, PL redox-active center, transit peptide, transport, oxidoreduc; 2.40A {Arabidopsis thaliana} PDB: 2lku_A

Probab=91.87  E-value=0.21  Score=34.00  Aligned_cols=26  Identities=0%  Similarity=-0.148  Sum_probs=18.1

Q ss_pred             CChhhHHHHHHHHHHHHHHHHcCcEEEEEeCCC
Q 028030          106 ETPGCTKQACAFRDSYEKFKKAGAEVIGISGDD  138 (215)
Q Consensus       106 ~C~~C~~~~~~l~~l~~~~~~~~v~vv~vs~d~  138 (215)
                      ||++|.+....|.+       .|+.+..+.++.
T Consensus        32 ~Cp~C~~ak~~L~~-------~gi~~~~~dI~~   57 (109)
T 3ipz_A           32 MCGFSNTVVQILKN-------LNVPFEDVNILE   57 (109)
T ss_dssp             SSHHHHHHHHHHHH-------TTCCCEEEEGGG
T ss_pred             CChhHHHHHHHHHH-------cCCCcEEEECCC
Confidence            99999987666555       366666666643

>2kok_A Arsenate reductase; brucellosis, zoonotic, oxidoreductase, S genomics, seattle structural genomics center for infectious ssgcid; NMR {Brucella abortus}

Probab=91.80  E-value=0.48  Score=32.81  Aligned_cols=61  Identities=13%  Similarity=0.064  Sum_probs=41.3

Q ss_pred             EEEEEcCCCChhhHHHHHHHHHHHHHHHHcCcEEEEEeC----CCHHHHHHHHHHcCCCeEEEEcCChhHHHHhC
Q 028030           98 VVYFYPADETPGCTKQACAFRDSYEKFKKAGAEVIGISG----DDSSSHKAFAKKYRLPYTLLSDEGNKVRKEWG  168 (215)
Q Consensus        98 ll~f~~a~~C~~C~~~~~~l~~l~~~~~~~~v~vv~vs~----d~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~g  168 (215)
                      +..|. ..+|+.|++....|.+       +|+.+..+.+    .+.+++++++++.|+  .-+....+..++.++
T Consensus         7 i~iY~-~~~C~~C~ka~~~L~~-------~gi~y~~~di~~~~~~~~~l~~~~~~~g~--~~l~n~~~~~~k~l~   71 (120)
T 2kok_A            7 VTIYG-IKNCDTMKKARIWLED-------HGIDYTFHDYKKEGLDAETLDRFLKTVPW--EQLLNRAGTTFRKLP   71 (120)
T ss_dssp             EEEEE-CSSCHHHHHHHHHHHH-------HTCCEEEEEHHHHCCCHHHHHHHHHHSCG--GGTBCSSSHHHHHSC
T ss_pred             EEEEE-CCCChHHHHHHHHHHH-------cCCcEEEEeeeCCCCCHHHHHHHHHHcCh--HhhccCCchhhHhcC
Confidence            44455 8999999988766665       3666666654    345889999998884  233445566666665

>2l4c_A Endoplasmic reticulum resident protein 27; ERP27, PDI, B domain, peptide binding; NMR {Homo sapiens}

Probab=91.77  E-value=1.3  Score=30.84  Aligned_cols=82  Identities=12%  Similarity=0.116  Sum_probs=47.4

Q ss_pred             CCcEEEEEEcCCCChhhHHHHHHHHHHHHHHHHcCcEEEEEeCCCHHHHHHHHHHcCCCeEEEEcCChhHHHHhCCCccC
Q 028030           94 GKPVVVYFYPADETPGCTKQACAFRDSYEKFKKAGAEVIGISGDDSSSHKAFAKKYRLPYTLLSDEGNKVRKEWGVPADF  173 (215)
Q Consensus        94 gk~~ll~f~~a~~C~~C~~~~~~l~~l~~~~~~~~v~vv~vs~d~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~g~~~~~  173 (215)
                      .+++||-|| .+||..|   .+.+.+.++.+ + .+.+..+                        .+.++++.|++.   
T Consensus        39 ~~v~VVGfF-~~~~~~~---~~~F~~~A~~~-~-d~~F~~t------------------------~~~~v~~~~~v~---   85 (124)
T 2l4c_A           39 TEVAVIGFF-QDLEIPA---VPILHSMVQKF-P-GVSFGIS------------------------TDSEVLTHYNIT---   85 (124)
T ss_dssp             SSEEEEEEC-SCTTSTH---HHHHHHHHHHC-T-TSEEEEE------------------------CCHHHHHHTTCC---
T ss_pred             CCCEEEEEE-CCCCChh---HHHHHHHHHhC-C-CceEEEE------------------------ChHHHHHHcCCC---
Confidence            578899999 9999998   45566666666 3 3544333                        235677888887   


Q ss_pred             CCCCCccEEEEEcCCCcEEEEEeCCCCCCccHHHHHHHHh
Q 028030          174 FGSLPGRQTYILDKNGVVQLIYNNQFQPEKHIDETLKFLQ  213 (215)
Q Consensus       174 ~g~~p~~~~~lid~~G~v~~~~~g~~~~~~~~~~il~~l~  213 (215)
                         .|  .++|+.+-..-...+.|.....-..++|.+.|+
T Consensus        86 ---~~--~vvlfkkfde~~~~~~g~~~~~~~~~~L~~FI~  120 (124)
T 2l4c_A           86 ---GN--TICLFRLVDNEQLNLEDEDIESIDATKLSRFIE  120 (124)
T ss_dssp             ---SS--CEEEEETTTTEEEEECHHHHTTCCHHHHHHHHH
T ss_pred             ---CC--eEEEEEcCCCCceeecCcccCCCCHHHHHHHHH
Confidence               46  677776532222234441000113455655554

>1s3c_A Arsenate reductase; ARSC, arsenite, oxidoreductase; 1.25A {Escherichia coli} PDB: 1sd9_A 1i9d_A 1j9b_A 1sd8_A 1jzw_A* 1sk1_A* 1sjz_A* 1sk0_A* 1sk2_A 1s3d_A

Probab=91.66  E-value=0.18  Score=36.25  Aligned_cols=64  Identities=11%  Similarity=0.082  Sum_probs=46.8

Q ss_pred             EEcCCCChhhHHHHHHHHHHHHHHHHcCcEEEEEeCC----CHHHHHHHHHHcCCCeEEEEcCChhHHHHhCCCc
Q 028030          101 FYPADETPGCTKQACAFRDSYEKFKKAGAEVIGISGD----DSSSHKAFAKKYRLPYTLLSDEGNKVRKEWGVPA  171 (215)
Q Consensus       101 f~~a~~C~~C~~~~~~l~~l~~~~~~~~v~vv~vs~d----~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~g~~~  171 (215)
                      +|...+|+.|++...-|.+       +|+.+..+...    +.++++++++..+++..-+....+..++.+++..
T Consensus         6 iY~~p~C~~crkak~~L~~-------~gi~~~~idi~~~~~~~~eL~~~~~~~g~p~~~l~n~~~~~yk~l~l~~   73 (141)
T 1s3c_A            6 IYHNPASGTSRNTLEMIRN-------SGTEPTIILYLENPPSRDELVKLIADMGISVRALLRKNVEPYEQLGLAE   73 (141)
T ss_dssp             EECCTTCHHHHHHHHHHHH-------TTCCCEEECTTTSCCCHHHHHHHHHHHTSCHHHHBCSSSHHHHHTTTTS
T ss_pred             EEECCCChHHHHHHHHHHH-------cCCCEEEEECCCCCccHHHHHHHhcccCCCHHHhccCCchhHHhcCCcc
Confidence            4448999999987655544       57777777653    4688999999999886655667777788777653

>3l4n_A Monothiol glutaredoxin-6; C-terminal domain of GRX6, oxidoreductase; HET: GSH; 1.50A {Saccharomyces cerevisiae}

Probab=91.31  E-value=0.5  Score=33.23  Aligned_cols=48  Identities=10%  Similarity=0.211  Sum_probs=28.8

Q ss_pred             EEEEEcCCCChhhHHHHHHHHHHHHHHHHcCcEEEEEeCC-CHHHHHHHHHH
Q 028030           98 VVYFYPADETPGCTKQACAFRDSYEKFKKAGAEVIGISGD-DSSSHKAFAKK  148 (215)
Q Consensus        98 ll~f~~a~~C~~C~~~~~~l~~l~~~~~~~~v~vv~vs~d-~~~~~~~~~~~  148 (215)
                      |+.|. .+|||+|.+....|.+... + .-.++++-|..+ +.+++++++++
T Consensus        16 Vvvys-k~~Cp~C~~ak~lL~~~~~-~-~v~~~~idid~~~d~~~~~~~l~~   64 (127)
T 3l4n_A           16 IIIFS-KSTCSYSKGMKELLENEYQ-F-IPNYYIIELDKHGHGEELQEYIKL   64 (127)
T ss_dssp             EEEEE-CTTCHHHHHHHHHHHHHEE-E-ESCCEEEEGGGSTTHHHHHHHHHH
T ss_pred             EEEEE-cCCCccHHHHHHHHHHhcc-c-CCCcEEEEecCCCCHHHHHHHHHH
Confidence            66677 8999999988776665310 0 112455555543 44566666654

>3gmf_A Protein-disulfide isomerase; oxidoreductase, PSI-2, NYSGXRC, structu genomics, protein structure initiative; 1.76A {Novosphingobium aromaticivorans}

Probab=91.26  E-value=0.63  Score=35.46  Aligned_cols=47  Identities=13%  Similarity=0.110  Sum_probs=34.1

Q ss_pred             ecCCcCCCcEEEEEEcCCCChhhHHHHHHHHHHHH-HHHHc-CcEEEEEe
Q 028030           88 SLSKFKGKPVVVYFYPADETPGCTKQACAFRDSYE-KFKKA-GAEVIGIS  135 (215)
Q Consensus        88 ~l~~~~gk~~ll~f~~a~~C~~C~~~~~~l~~l~~-~~~~~-~v~vv~vs  135 (215)
                      .+.+-.++++|+.|. -..||+|.+..+.+....+ +|-+. .++++...
T Consensus         9 ~~G~~~a~vtivef~-D~~Cp~C~~~~~~~~~~l~~~~i~~g~v~~v~r~   57 (205)
T 3gmf_A            9 LLGNPAAKLRLVEFV-SYTCPHCSHFEIESEGQLKIGMVQPGKGAIEVRN   57 (205)
T ss_dssp             EESCTTCSEEEEEEE-CTTCHHHHHHHHHHHHHHHHHTTTTTSEEEEEEE
T ss_pred             eecCCCCCeEEEEEE-CCCCHHHHHHHHHHHHHHHHHhccCCeEEEEEEe
Confidence            444445789999999 8889999999888766544 77322 47777654

>1u6t_A SH3 domain-binding glutamic acid-rich-like protein; SH3-binding, glutaredoxin, thioredoxin fold, crystallography, protein binding; HET: CIT; 1.90A {Homo sapiens} PDB: 1wry_A

Probab=90.65  E-value=1.7  Score=30.24  Aligned_cols=50  Identities=6%  Similarity=-0.021  Sum_probs=28.5

Q ss_pred             EEEEEcCCCChhhHHHHHHHHHHHHHHHHcCcEEEEEeCCCH-HHHHHHHHHc
Q 028030           98 VVYFYPADETPGCTKQACAFRDSYEKFKKAGAEVIGISGDDS-SSHKAFAKKY  149 (215)
Q Consensus        98 ll~f~~a~~C~~C~~~~~~l~~l~~~~~~~~v~vv~vs~d~~-~~~~~~~~~~  149 (215)
                      |..|. ++.|+.|... ..=.+...-+..+||.+.-+.++.. +.-+++.+..
T Consensus         2 V~vYt-t~~c~~c~~k-k~c~~aK~lL~~kgV~feEidI~~d~~~r~eM~~~~   52 (121)
T 1u6t_A            2 IRVYI-ASSSGSTAIK-KKQQDVLGFLEANKIGFEEKDIAANEENRKWMRENV   52 (121)
T ss_dssp             EEEEE-CTTCSCHHHH-HHHHHHHHHHHHTTCCEEEEECTTCHHHHHHHHHHS
T ss_pred             EEEEe-cCCCCCccch-HHHHHHHHHHHHCCCceEEEECCCCHHHHHHHHHhc
Confidence            45555 8999999511 1111222335667899888888644 4434444443

>3ihg_A RDME; flavoenzyme, anthracycline, polyketide biosynthesis, merohedral twinning, enzyme mechanism, hydroxylase, flavoprotein; HET: FAD VAK; 2.49A {Streptomyces purpurascens}

Probab=90.24  E-value=2.3  Score=36.92  Aligned_cols=113  Identities=12%  Similarity=0.166  Sum_probs=67.8

Q ss_pred             ccCCCCCCCCCeEEeCCCCCeeecCCcCCC-cEEEEEEcCCCChhhHHHHHHHHHHHHHHHHcCcEEEEEeCCCHHHHHH
Q 028030           66 AKVSKGQAPPSFTLKDQEGRNVSLSKFKGK-PVVVYFYPADETPGCTKQACAFRDSYEKFKKAGAEVIGISGDDSSSHKA  144 (215)
Q Consensus        66 ~~~~~g~~~P~f~l~~~~g~~~~l~~~~gk-~~ll~f~~a~~C~~C~~~~~~l~~l~~~~~~~~v~vv~vs~d~~~~~~~  144 (215)
                      ....+|..+|+.-+.. +|+.+++-|+-|+ .+||.+-  .. .   .-.....+..+++. -.++++.|..+       
T Consensus       418 ~~~~pG~r~p~~~l~~-~~~~~~~~dl~g~~f~ll~~~--~~-~---~~~~~~~~~~~~~~-~~~~~~~~~~~-------  482 (535)
T 3ihg_A          418 PSGRPGFRGPHVLVSR-HGERLSTVDLFGDGWTLLAGE--LG-A---DWVAAAEAVSAELG-VPVRAYRVGAG-------  482 (535)
T ss_dssp             CCCCTTSBCCCCEEEE-TTEEEEGGGGCSSSEEEEECT--TC-H---HHHHHHHHHHHHHT-CCEEEEEBTTT-------
T ss_pred             CCCCCCCcCCCceeec-CCceeeHHHhcCCceEEEecC--Cc-c---HHHHHHHHHHHhcC-CceEEEEeCCc-------
Confidence            4568999999998853 5777888887554 6776542  11 1   11111122222221 12444444211       


Q ss_pred             HHHHcCCCeEEEEcCChhHHHHhCCCccCCCCCCccEEEEEcCCCcEEEEEeCCC-CCCccHHHHHHHH
Q 028030          145 FAKKYRLPYTLLSDEGNKVRKEWGVPADFFGSLPGRQTYILDKNGVVQLIYNNQF-QPEKHIDETLKFL  212 (215)
Q Consensus       145 ~~~~~~~~~~~~~d~~~~~~~~~g~~~~~~g~~p~~~~~lid~~G~v~~~~~g~~-~~~~~~~~il~~l  212 (215)
                                 +.|..+.+.+.||+..      .  ..+||-|||-|-++..... ++...+.++++.|
T Consensus       483 -----------~~d~~~~~~~~~~~~~------~--~~~lvRPD~~va~r~~~~~~~~~~~l~~~~~~~  532 (535)
T 3ihg_A          483 -----------LTDPESAVSERYGIGK------A--GASLVRPDGIVAWRTDEAAADAAQTLEGVLRRV  532 (535)
T ss_dssp             -----------BBCSSCCHHHHHTCTT------T--CEEEECTTSBEEEEESSCCSSHHHHHHHHHHHH
T ss_pred             -----------cccCcchHHHHhCCCC------C--ceEeeCCCceeEEecCCCCCCHHHHHHHHHHHH
Confidence                       4678889999999874      2  5899999999999987632 2234445555443

>1sji_A Calsequestrin 2, calsequestrin, cardiac muscle isoform; glycoprotein, calcium-binding, muscle protein, metal binding protein; 2.40A {Canis lupus familiaris} PDB: 2vaf_A

Probab=88.81  E-value=2.7  Score=34.30  Aligned_cols=40  Identities=10%  Similarity=0.062  Sum_probs=30.7

Q ss_pred             cEEEEEEcCCCChhhHHHHHHHHHHHHHHHH-cCcEEEEEeC
Q 028030           96 PVVVYFYPADETPGCTKQACAFRDSYEKFKK-AGAEVIGISG  136 (215)
Q Consensus        96 ~~ll~f~~a~~C~~C~~~~~~l~~l~~~~~~-~~v~vv~vs~  136 (215)
                      ..+|.|. ..+|+.|....+.++++++++++ ..+.++.+..
T Consensus       247 ~~~l~f~-~~~~~~~~~~~~~~~~vA~~~~~~~~~~f~~id~  287 (350)
T 1sji_A          247 IHIVAFA-ERSDPDGYEFLEILKQVARDNTDNPDLSIVWIDP  287 (350)
T ss_dssp             EEEEEEC-CTTSHHHHHHHHHHHHHHHHGGGCSSCCEEEECG
T ss_pred             cEEEEEE-cCCCccHHHHHHHHHHHHHHhCCCCceEEEEECc
Confidence            3455566 78899999999999999999985 3477777754

>1rw1_A Conserved hypothetical protein YFFB; thioredoxin fold, structure 2 function project, S2F, structu genomics, unknown function; HET: MSE IPA; 1.02A {Pseudomonas aeruginosa} SCOP: c.47.1.12

Probab=88.56  E-value=0.52  Score=32.34  Aligned_cols=60  Identities=5%  Similarity=-0.028  Sum_probs=39.7

Q ss_pred             EEEEcCCCChhhHHHHHHHHHHHHHHHHcCcEEEEEeCC----CHHHHHHHHHHcCCCeEEEEcCChhHHHHhC
Q 028030           99 VYFYPADETPGCTKQACAFRDSYEKFKKAGAEVIGISGD----DSSSHKAFAKKYRLPYTLLSDEGNKVRKEWG  168 (215)
Q Consensus        99 l~f~~a~~C~~C~~~~~~l~~l~~~~~~~~v~vv~vs~d----~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~g  168 (215)
                      ..|. ..+|+.|++....|.+       +|+.+..+.++    +.+++++|++..|+  .-+....+..++.++
T Consensus         3 ~iY~-~~~C~~C~kak~~L~~-------~gi~~~~~di~~~~~~~~~l~~~~~~~g~--~~l~n~~~~~~k~l~   66 (114)
T 1rw1_A            3 VLYG-IKACDTMKKARTWLDE-------HKVAYDFHDYKAVGIDREHLRRWCAEHGW--QTVLNRAGTTFRKLD   66 (114)
T ss_dssp             EEEE-CSSCHHHHHHHHHHHH-------TTCCEEEEEHHHHCCCHHHHHHHHHHHCH--HHHBCTTSHHHHTSC
T ss_pred             EEEE-CCCChHHHHHHHHHHH-------CCCceEEEeecCCCCCHHHHHHHHHhCCh--HHhccCCcHhHHhcC
Confidence            3445 8999999987665554       47777666653    45889999998873  333344555555554

>1nm3_A Protein HI0572; hybrid, peroxiredoxin, glutaredoxin, electron transport; 2.80A {Haemophilus influenzae} SCOP: c.47.1.1 c.47.1.10

Probab=87.58  E-value=0.82  Score=35.32  Aligned_cols=34  Identities=21%  Similarity=0.233  Sum_probs=22.1

Q ss_pred             cEEEEEEcCCCChhhHHHHHHHHHHHHHHHHcCcEEEEEeCC
Q 028030           96 PVVVYFYPADETPGCTKQACAFRDSYEKFKKAGAEVIGISGD  137 (215)
Q Consensus        96 ~~ll~f~~a~~C~~C~~~~~~l~~l~~~~~~~~v~vv~vs~d  137 (215)
                      ..++.|. ..||+.|++....|.+.       |+.+..+.++
T Consensus       170 ~~i~ly~-~~~Cp~C~~a~~~L~~~-------~i~~~~~~i~  203 (241)
T 1nm3_A          170 ESISIFT-KPGCPFCAKAKQLLHDK-------GLSFEEIILG  203 (241)
T ss_dssp             CCEEEEE-CSSCHHHHHHHHHHHHH-------TCCCEEEETT
T ss_pred             ceEEEEE-CCCChHHHHHHHHHHHc-------CCceEEEECC
Confidence            4566677 89999999776655542       4555555543

>2axo_A Hypothetical protein ATU2684; alpha beta protein., structural genomics, PSI, protein struc initiative; 1.80A {Agrobacterium tumefaciens str} SCOP: c.47.1.19

Probab=85.99  E-value=2.7  Score=33.52  Aligned_cols=37  Identities=19%  Similarity=0.220  Sum_probs=26.5

Q ss_pred             cEEEEEEcCCCChhhHHHHHHHHHHHHHHHHcCcEEEEEeC
Q 028030           96 PVVVYFYPADETPGCTKQACAFRDSYEKFKKAGAEVIGISG  136 (215)
Q Consensus        96 ~~ll~f~~a~~C~~C~~~~~~l~~l~~~~~~~~v~vv~vs~  136 (215)
                      +.|..|+ ..+|++|...-..|.++..+   .++..+.+..
T Consensus        44 ~~VelyT-s~gCp~C~~Ak~lL~~~~~~---~~vi~l~~~v   80 (270)
T 2axo_A           44 GVVELFT-SQGCASCPPADEALRKMIQK---GDVVGLSYHV   80 (270)
T ss_dssp             CEEEEEE-CTTCTTCHHHHHHHHHHHHH---TSSEEEEEEC
T ss_pred             cEEEEEe-CCCCCChHHHHHHHHHhhcc---CCeeeEEEEE
Confidence            5666677 99999999888888887654   3454445543

>3us3_A Calsequestrin-1; calcium-binding protein; 1.74A {Oryctolagus cuniculus} PDB: 1a8y_A 3v1w_A* 3trq_A* 3trp_A* 3uom_A

Probab=85.57  E-value=3.5  Score=34.05  Aligned_cols=72  Identities=15%  Similarity=0.127  Sum_probs=48.4

Q ss_pred             CcEEEEEEcCCCChhhHHHHHHHHHHHHHHHHc-CcEEEEEeCCCHHHHHHHHHHcCCCeEEEEcCChhHHHHhCCCccC
Q 028030           95 KPVVVYFYPADETPGCTKQACAFRDSYEKFKKA-GAEVIGISGDDSSSHKAFAKKYRLPYTLLSDEGNKVRKEWGVPADF  173 (215)
Q Consensus        95 k~~ll~f~~a~~C~~C~~~~~~l~~l~~~~~~~-~v~vv~vs~d~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~g~~~~~  173 (215)
                      +..+|.|+ ..+|+.|...+..|++++++++++ .+.++.+..+.-....                 ..+.+.||+..  
T Consensus       248 ~~~~~~f~-~~~~~~~~~~~~~l~~vA~~~~~~~ki~F~~id~~~~~~~l-----------------~~~~~~fgl~~--  307 (367)
T 3us3_A          248 GIHIVAFA-EEADPDGYEFLEILKSVAQDNTDNPDLSIIWIDPDDFPLLV-----------------PYWEKTFDIDL--  307 (367)
T ss_dssp             TEEEEEEC-CTTSHHHHHHHHHHHHHHHHTTTCTTCCEEEECGGGCTTTH-----------------HHHHHHHTCCT--
T ss_pred             CcEEEEEE-cCCChhHHHHHHHHHHHHHHcCCCCceEEEEECCccchhHH-----------------HHHHHhcCCCC--
Confidence            35666677 778888999999999999999975 3888887653211000                 01134577762  


Q ss_pred             CCCCCccEEEEEcCCCc
Q 028030          174 FGSLPGRQTYILDKNGV  190 (215)
Q Consensus       174 ~g~~p~~~~~lid~~G~  190 (215)
                        ..|  .+++++....
T Consensus       308 --~~P--~~~i~~~~~~  320 (367)
T 3us3_A          308 --SAP--QIGVVNVTDA  320 (367)
T ss_dssp             --TSC--EEEEEETTTC
T ss_pred             --CCC--eEEEEecccc
Confidence              278  8999986654

>2in3_A Hypothetical protein; DSBA family, FRNE-like subfamily, disulfide isomerase, struc genomics, PSI-2, protein structure initiative; 1.85A {Nitrosomonas europaea}

Probab=84.97  E-value=4.5  Score=30.27  Aligned_cols=39  Identities=21%  Similarity=0.100  Sum_probs=27.8

Q ss_pred             cEEEEEEcCCCChhhHHHHHHHHHHHHHHHHcCcEEEEEeC
Q 028030           96 PVVVYFYPADETPGCTKQACAFRDSYEKFKKAGAEVIGISG  136 (215)
Q Consensus        96 ~~ll~f~~a~~C~~C~~~~~~l~~l~~~~~~~~v~vv~vs~  136 (215)
                      +.|.+|+ -.-||.|-...+.+.++.+ +.+.+++|.....
T Consensus         8 ~~I~~f~-D~~CP~C~~~~~~~~~l~~-~~~~~v~v~~~~~   46 (216)
T 2in3_A            8 PVLWYIA-DPMCSWCWGFAPVIENIRQ-EYSAFLTVKIMPG   46 (216)
T ss_dssp             CEEEEEE-CTTCHHHHHHHHHHHHHHH-HHTTTCEEEEEEC
T ss_pred             eeEEEEE-CCCCchhhcchHHHHHHHh-cCCCCeEEEEeec
Confidence            4555565 8889999988788888876 4444577776653

>3ghf_A Septum site-determining protein MINC; structural genomics, cell division, cell cycle, septation, PSI-2, protein structure initiative; HET: CIT; 2.20A {Salmonella typhimurium LT2}

Probab=82.95  E-value=2.4  Score=29.39  Aligned_cols=55  Identities=25%  Similarity=0.378  Sum_probs=39.2

Q ss_pred             cCCCcEEEEEEcCCCChhhHHHHHHHHHHHHHHHHcCcEEEEEeCCCHHHHHHHHHHcCCCe
Q 028030           92 FKGKPVVVYFYPADETPGCTKQACAFRDSYEKFKKAGAEVIGISGDDSSSHKAFAKKYRLPY  153 (215)
Q Consensus        92 ~~gk~~ll~f~~a~~C~~C~~~~~~l~~l~~~~~~~~v~vv~vs~d~~~~~~~~~~~~~~~~  153 (215)
                      |+|.++||++- .-- .     -..+..|.+.+...|+.+|||....++.+++++...|+++
T Consensus        45 F~~aPVVlDl~-~l~-~-----~~dl~~L~~~l~~~gl~~vGV~g~~~~~~~~~a~~~GLp~   99 (120)
T 3ghf_A           45 LKHAPVVINVS-GLE-S-----PVNWPELHKIVTSTGLRIIGVSGCKDASLKVEIDRMGLPL   99 (120)
T ss_dssp             HTTCEEEEEEE-ECC-S-----SCCHHHHHHHHHTTTCEEEEEESCCCHHHHHHHHHHTCCE
T ss_pred             hCCCcEEEEcc-ccC-C-----hHHHHHHHHHHHHcCCEEEEEeCCCcHHHHHHHHHCCCCc
Confidence            47888998886 221 1     1246667777777889999998877676778888877764

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	215
d1zyea1	158	c.47.1.10 (A:6-163) Peroxiredoxin-3 (AOP-1, SP-22)	1e-30
d1uula_	194	c.47.1.10 (A:) Tryparedoxin peroxidase (thioredoxi	8e-30
d1qmva_	197	c.47.1.10 (A:) Thioredoxin peroxidase 2 (thioredox	2e-28
d2zcta1	237	c.47.1.10 (A:6-242) Peroxiredoxin {Aeropyrum perni	2e-28
d1e2ya_	167	c.47.1.10 (A:) Tryparedoxin peroxidase (thioredoxi	4e-28
d2h01a1	170	c.47.1.10 (A:2-171) Thioredoxin peroxidase 2 (thio	6e-27
d1n8ja_	186	c.47.1.10 (A:) Alkyl hydroperoxide reductase AhpC	6e-27
d1zofa1	170	c.47.1.10 (A:1-170) Thioredoxin reductase TsaA {He	7e-27
d1we0a1	166	c.47.1.10 (A:1-166) Alkyl hydroperoxide reductase	2e-24
d1q98a_	164	c.47.1.10 (A:) Thiol peroxidase Tpx {Haemophilus i	3e-23
d1prxa_	220	c.47.1.10 (A:) 1-Cys peroxiredoxin {Human (Homo sa	3e-23
d1xcca_	219	c.47.1.10 (A:) 1-Cys peroxiredoxin {Plasmodium yoe	1e-22
d2bmxa1	169	c.47.1.10 (A:2-170) Alkyl hydroperoxide reductase	6e-22
d1psqa_	163	c.47.1.10 (A:) Probable thiol peroxidase PsaD {Str	3e-21
d1qxha_	164	c.47.1.10 (A:) Thiol peroxidase Tpx {Escherichia c	4e-21
d1xvqa_	166	c.47.1.10 (A:) Thiol peroxidase Tpx {Mycobacterium	2e-20
d2cx4a1	160	c.47.1.10 (A:4-163) Bacterioferritin comigratory p	5e-19
d1xvwa1	153	c.47.1.10 (A:1-153) Putative peroxiredoxin Rv2238c	7e-18
d2a4va1	156	c.47.1.10 (A:59-214) Peroxiredoxin dot5 {Baker's y	2e-17
d1nm3a2	163	c.47.1.10 (A:3-165) N-terminal, Prx domain of Hybr	3e-16
d2b7ka1	169	c.47.1.10 (A:111-279) Thioredoxin-like protein Sco	1e-15
d2fy6a1	143	c.47.1.10 (A:33-175) Peptide methionine sulfoxide	3e-15
d1hd2a_	161	c.47.1.10 (A:) Peroxiredoxin 5 {Human (Homo sapien	1e-14
d1lu4a_	134	c.47.1.10 (A:) Soluble secreted antigen MPT53 {Myc	3e-14
d1wp0a1	160	c.47.1.10 (A:138-297) Thioredoxin-like protein Sco	3e-14
d2b5xa1	143	c.47.1.10 (A:1-143) thiol:disulfide oxidoreductase	2e-13
d1xzoa1	172	c.47.1.10 (A:3-174) Thioredoxin-like protein Sco1	4e-13
d1st9a_	137	c.47.1.10 (A:) Thiol-disulfide oxidoreductase ResA	3e-12
d1jfua_	176	c.47.1.10 (A:) Membrane-anchored thioredoxin-like	2e-11
d1zzoa1	134	c.47.1.10 (A:45-178) Lipoprotein DsbF {Mycobacteri	4e-11
d1i5ga_	144	c.47.1.10 (A:) Tryparedoxin II {Crithidia fascicul	6e-11
d1tp9a1	162	c.47.1.10 (A:1-162) Plant peroxiredoxin {Western b	8e-11
d1o73a_	144	c.47.1.10 (A:) Tryparedoxin I {Trypanosoma brucei	4e-10
d2cvba1	187	c.47.1.10 (A:2-188) Probable thiol-disulfide isome	7e-08
d1o8xa_	144	c.47.1.10 (A:) Tryparedoxin I {Crithidia fascicula	2e-07
d1xiya1	179	c.47.1.10 (A:2-180) 1-Cys peroxiredoxin {Malaria p	1e-06
d1z5ye1	136	c.47.1.10 (E:49-184) Thioredoxin-like protein CcmG	4e-05
d1knga_	144	c.47.1.10 (A:) Thioredoxin-like protein CcmG (CycY	5e-05
d1xwaa_	111	c.47.1.1 (A:) Thioredoxin {Fruit fly (Drosophila m	0.002
d2fwha1	117	c.47.1.1 (A:428-544) Thiol:disulfide interchange p	0.002

>d1zyea1 c.47.1.10 (A:6-163) Peroxiredoxin-3 (AOP-1, SP-22) {Cow (Bos taurus) [TaxId: 9913]} Length = 158

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Peroxiredoxin-3 (AOP-1, SP-22)
species: Cow (Bos taurus) [TaxId: 9913]

 Score =  108 bits (270), Expect = 1e-30
 Identities = 47/153 (30%), Positives = 76/153 (49%), Gaps = 11/153 (7%)

Query: 72  QAPPSFTLK---DQEGRNVSLSKFKGKPVVVYFYPADETPGCTKQACAFRDSYEKFKKAG 128
           Q  P F        E + +SL  FKGK +V++FYP D T  C  +  AF D   +F    
Sbjct: 1   QHAPYFKGTAVVSGEFKEISLDDFKGKYLVLFFYPLDFTFVCPTEIIAFSDKASEFHDVN 60

Query: 129 AEVIGISGDDSSSHKAFAKKYR-------LPYTLLSDEGNKVRKEWGVPADFFGSLPGRQ 181
            EV+ +S D   SH A+    R       +   LLSD   ++ +++GV  +  G L  R 
Sbjct: 61  CEVVAVSVDSHFSHLAWINTPRKNGGLGHMNIALLSDLTKQISRDYGVLLEGPG-LALRG 119

Query: 182 TYILDKNGVVQLIYNNQFQPEKHIDETLKFLQS 214
            +I+D NGV++ +  N     + ++ETL+ +++
Sbjct: 120 LFIIDPNGVIKHLSVNDLPVGRSVEETLRLVKA 152

>d1uula_ c.47.1.10 (A:) Tryparedoxin peroxidase (thioredoxin peroxidase homologue) {Trypanosoma cruzi [TaxId: 5693]} Length = 194

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Tryparedoxin peroxidase (thioredoxin peroxidase homologue)
species: Trypanosoma cruzi [TaxId: 5693]

 Score =  107 bits (268), Expect = 8e-30
 Identities = 41/160 (25%), Positives = 74/160 (46%), Gaps = 12/160 (7%)

Query: 66  AKVSKGQAPPSFT----LKDQEGRNVSLSKFKGKPVVVYFYPADETPGCTKQACAFRDSY 121
            +       P F     + +   + V+L+ +KGK +V++FYP D T  C  + C F D  
Sbjct: 1   GEAEDLHPAPDFNETALMPNGTFKKVALTSYKGKWLVLFFYPMDFTFVCPTEICQFSDRV 60

Query: 122 EKFKKAGAEVIGISGDDSSSHKAFAKKYR-------LPYTLLSDEGNKVRKEWGVPADFF 174
           ++F   G EV+  S D   SH A+    R       +   +L+D+   + K +GV  +  
Sbjct: 61  KEFSDIGCEVLACSMDSEYSHLAWTSIERKRGGLGQMNIPILADKTKCIMKSYGVLKEED 120

Query: 175 GSLPGRQTYILDKNGVVQLIYNNQFQPEKHIDETLKFLQS 214
           G +  R  +I+D    ++ I  N     + +DE L+ +++
Sbjct: 121 G-VAYRGLFIIDPKQNLRQITVNDLPVGRDVDEALRLVKA 159

>d1qmva_ c.47.1.10 (A:) Thioredoxin peroxidase 2 (thioredoxin peroxidase B, 2-cys peroxiredoxin) {Human (Homo sapiens) [TaxId: 9606]} Length = 197

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Thioredoxin peroxidase 2 (thioredoxin peroxidase B, 2-cys peroxiredoxin)
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  103 bits (258), Expect = 2e-28
 Identities = 51/160 (31%), Positives = 79/160 (49%), Gaps = 11/160 (6%)

Query: 65  SAKVSKGQAPPSFTLK---DQEGRNVSLSKFKGKPVVVYFYPADETPGCTKQACAFRDSY 121
           S     G+  P F      D   + V LS +KGK VV++FYP D T  C  +  AF +  
Sbjct: 2   SGNARIGKPAPDFKATAVVDGAFKEVKLSDYKGKYVVLFFYPLDFTFVCPTEIIAFSNRA 61

Query: 122 EKFKKAGAEVIGISGDDSSSHKAFAKKYR-------LPYTLLSDEGNKVRKEWGVPADFF 174
           E F+K G EV+G+S D   +H A+    R       L   LL+D   ++ +++GV     
Sbjct: 62  EDFRKLGCEVLGVSVDSQFTHLAWINTPRKEGGLGPLNIPLLADVTRRLSEDYGVLKTDE 121

Query: 175 GSLPGRQTYILDKNGVVQLIYNNQFQPEKHIDETLKFLQS 214
           G +  R  +I+D  GV++ I  N     + +DE L+ +Q+
Sbjct: 122 G-IAYRGLFIIDGKGVLRQITVNDLPVGRSVDEALRLVQA 160

>d2zcta1 c.47.1.10 (A:6-242) Peroxiredoxin {Aeropyrum pernix [TaxId: 56636]} Length = 237

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Peroxiredoxin
species: Aeropyrum pernix [TaxId: 56636]

 Score =  104 bits (261), Expect = 2e-28
 Identities = 36/152 (23%), Positives = 72/152 (47%), Gaps = 8/152 (5%)

Query: 71  GQAPPSFTLKDQEG--RNVSLSKFKGKPVVVYFYPADETPGCTKQACAFRDSYEKFKKAG 128
           G+  P   +    G  +       +GK  V++ +PAD TP CT +  +F   YE F++ G
Sbjct: 4   GERFPEMEVTTDHGVIKLPDHYVSQGKWFVLFSHPADFTPVCTTEFVSFARRYEDFQRLG 63

Query: 129 AEVIGISGDDSSSHKAFAKKYR------LPYTLLSDEGNKVRKEWGVPADFFGSLPGRQT 182
            ++IG+S D   SH  + +         +P+ +++D    V +  G+      +   R  
Sbjct: 64  VDLIGLSVDSVFSHIKWKEWIERHIGVRIPFPIIADPQGTVARRLGLLHAESATHTVRGV 123

Query: 183 YILDKNGVVQLIYNNQFQPEKHIDETLKFLQS 214
           +I+D  GV++ +     +  + +DE L+ +++
Sbjct: 124 FIVDARGVIRTMLYYPMELGRLVDEILRIVKA 155

>d1e2ya_ c.47.1.10 (A:) Tryparedoxin peroxidase (thioredoxin peroxidase homologue) {Crithidia fasciculata [TaxId: 5656]} Length = 167

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Tryparedoxin peroxidase (thioredoxin peroxidase homologue)
species: Crithidia fasciculata [TaxId: 5656]

 Score =  102 bits (254), Expect = 4e-28
 Identities = 43/161 (26%), Positives = 76/161 (47%), Gaps = 14/161 (8%)

Query: 65  SAKVSKGQAPPSFT----LKDQEGRNVSLSKFKGKPVVVYFYPADETPGCTKQACAFRDS 120
           +AK+      P F     + +   + VSLS +KGK VV++FYP D T  C  +   F D 
Sbjct: 2   AAKL--NHPAPEFDDMALMPNGTFKKVSLSSYKGKYVVLFFYPMDFTFVCPTEIIQFSDD 59

Query: 121 YEKFKKAGAEVIGISGDDSSSHKAFAKKYRL-------PYTLLSDEGNKVRKEWGVPADF 173
            ++F +   EVI  S D   SH  +    R           +L+D+   + + +GV  + 
Sbjct: 60  AKRFAEINTEVISCSCDSEYSHLQWTSVDRKKGGLGPMAIPMLADKTKAIARAYGVLDED 119

Query: 174 FGSLPGRQTYILDKNGVVQLIYNNQFQPEKHIDETLKFLQS 214
            G    R  +I+D NG ++ I  N     ++++E ++ +++
Sbjct: 120 SGV-AYRGVFIIDPNGKLRQIIINDMPIGRNVEEVIRLVEA 159

>d2h01a1 c.47.1.10 (A:2-171) Thioredoxin peroxidase 2 (thioredoxin peroxidase B, 2-cys peroxiredoxin) {Plasmodium yoelii [TaxId: 5861]} Length = 170

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Thioredoxin peroxidase 2 (thioredoxin peroxidase B, 2-cys peroxiredoxin)
species: Plasmodium yoelii [TaxId: 5861]

 Score = 99.2 bits (246), Expect = 6e-27
 Identities = 47/155 (30%), Positives = 73/155 (47%), Gaps = 15/155 (9%)

Query: 72  QAPPSFTLK----DQEGRNVSLSKFKG-KPVVVYFYPADETPGCTKQACAFRDSYEKFKK 126
           QAP SF  +    D     VSLS F G K V++YFYP D T  C  +  A   + + FK+
Sbjct: 1   QAP-SFKAEAVFGDNTFGEVSLSDFIGKKYVLLYFYPLDFTFVCPSEIIALDKALDSFKE 59

Query: 127 AGAEVIGISGDDSSSHKA-------FAKKYRLPYTLLSDEGNKVRKEWGVPADFFGSLPG 179
              E++G S D   +H A             + +TL+SD    + + + V  +   S+  
Sbjct: 60  RNVELLGCSVDSKFTHLAWKKTPLSQGGIGNIKHTLISDISKSIARSYDVLFNE--SVAL 117

Query: 180 RQTYILDKNGVVQLIYNNQFQPEKHIDETLKFLQS 214
           R   ++DK GVVQ +  N     + +DE L+ + +
Sbjct: 118 RAFVLIDKQGVVQHLLVNNLALGRSVDEILRLIDA 152

>d1n8ja_ c.47.1.10 (A:) Alkyl hydroperoxide reductase AhpC {Salmonella typhimurium [TaxId: 90371]} Length = 186

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Alkyl hydroperoxide reductase AhpC
species: Salmonella typhimurium [TaxId: 90371]

 Score = 99.5 bits (247), Expect = 6e-27
 Identities = 33/151 (21%), Positives = 62/151 (41%), Gaps = 8/151 (5%)

Query: 71  GQAPPSFTL---KDQEGRNVSLSKFKGKPVVVYFYPADETPGCTKQACAFRDSYEKFKKA 127
                 F     K+ E   V+    +G+  V +FYPAD T     +     D YE+ +K 
Sbjct: 4   NTKIKPFKNQAFKNGEFIEVTEKDTEGRWSVFFFYPADFTFVSPTELGDVADHYEELQKL 63

Query: 128 GAEVIGISGDDSSSHKAFAKKYRL----PYTLLSDEGNKVRKEWGVPADFFGSLPGRQTY 183
           G +V  +S D   +HKA+           Y ++ D    + + +    +  G    R T+
Sbjct: 64  GVDVYSVSTDTHFTHKAWHSSSETIAKIKYAMIGDPTGALTRNFDNMREDEGL-ADRATF 122

Query: 184 ILDKNGVVQLIYNNQFQPEKHIDETLKFLQS 214
           ++D  G++Q I        +   + L+ +++
Sbjct: 123 VVDPQGIIQAIEVTAEGIGRDASDLLRKIKA 153

>d1zofa1 c.47.1.10 (A:1-170) Thioredoxin reductase TsaA {Helicobacter pylori [TaxId: 210]} Length = 170

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Thioredoxin reductase TsaA
species: Helicobacter pylori [TaxId: 210]

 Score = 99.2 bits (246), Expect = 7e-27
 Identities = 37/157 (23%), Positives = 65/157 (41%), Gaps = 15/157 (9%)

Query: 71  GQAPPSFTLKDQEGRN-----VSLSKFKGKPVVVY-FYPADETPGCTKQACAFRDSYEKF 124
            +  P F      G N       LSK  GK  V+  F+P D T  C  +  AF    + F
Sbjct: 4   TKLAPDFKAPAVLGNNEVDEHFELSKNLGKNGVILFFWPKDFTFVCPTEIIAFDKRVKDF 63

Query: 125 KKAGAEVIGISGDDSSSHKAFAKKYR-------LPYTLLSDEGNKVRKEWGVPADFFGSL 177
            + G  VIG+S D    H A+            + + +++D    + +++ V  +    +
Sbjct: 64  HEKGFNVIGVSIDSEQVHFAWKNTPVEKGGIGQVSFPMVADITKSISRDYDVLFEEA--I 121

Query: 178 PGRQTYILDKNGVVQLIYNNQFQPEKHIDETLKFLQS 214
             R  +++DKN  V+    N     ++ DE L+ + +
Sbjct: 122 ALRGAFLIDKNMKVRHAVINDLPLGRNADEMLRMVDA 158

>d1we0a1 c.47.1.10 (A:1-166) Alkyl hydroperoxide reductase AhpC {Amphibacillus xylanus [TaxId: 1449]} Length = 166

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Alkyl hydroperoxide reductase AhpC
species: Amphibacillus xylanus [TaxId: 1449]

 Score = 92.7 bits (229), Expect = 2e-24
 Identities = 38/152 (25%), Positives = 67/152 (44%), Gaps = 9/152 (5%)

Query: 71  GQAPPSFTLK----DQEGRNVSLSKFKGKPVVVYFYPADETPGCTKQACAFRDSYEKFKK 126
           G     F  +     ++   V+ +  KGK  +V FYPAD +  C  +    +  Y + KK
Sbjct: 4   GTEVQPFRAQAFQSGKDFFEVTEADLKGKWSIVVFYPADFSFVCPTELEDVQKEYAELKK 63

Query: 127 AGAEVIGISGDDSSSHKAF----AKKYRLPYTLLSDEGNKVRKEWGVPADFFGSLPGRQT 182
            G EV  +S D    HKA+         + Y ++ D    + +++ V  +  G L  R T
Sbjct: 64  LGVEVYSVSTDTHFVHKAWHENSPAVGSIEYIMIGDPSQTISRQFDVLNEETG-LADRGT 122

Query: 183 YILDKNGVVQLIYNNQFQPEKHIDETLKFLQS 214
           +I+D +GV+Q I  N     +     +  +++
Sbjct: 123 FIIDPDGVIQAIEINADGIGRDASTLINKVKA 154

>d1q98a_ c.47.1.10 (A:) Thiol peroxidase Tpx {Haemophilus influenzae [TaxId: 727]} Length = 164

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Thiol peroxidase Tpx
species: Haemophilus influenzae [TaxId: 727]

 Score = 89.5 bits (221), Expect = 3e-23
 Identities = 28/150 (18%), Positives = 50/150 (33%), Gaps = 7/150 (4%)

Query: 68  VSKGQAPPSFTLKDQEGRNVSLSKFKGKPVVVYFYPADETPGCTKQACAFRDSYEKFKKA 127
              G+   +F L   +  +V+L+ F  K  V+  +P+ +T  C      F     K    
Sbjct: 16  PQVGEIVENFILVGNDLADVALNDFASKRKVLNIFPSIDTGVCATSVRKFNQQAAKLSN- 74

Query: 128 GAEVIGISGDDSSSHKAFAKKYRLPYTLLSD--EGNKVRKEWGVPADF--FGSLPGRQTY 183
              V+ IS D   +   F     +           + +  + GV         L  R   
Sbjct: 75  -TIVLCISADLPFAQARFCGAEGIENAKTVSTFRNHALHSQLGVDIQTGPLAGLTSRAVI 133

Query: 184 ILDKNGVVQLI-YNNQFQPEKHIDETLKFL 212
           +LD+   V       + + E + +  L  L
Sbjct: 134 VLDEQNNVLHSQLVEEIKEEPNYEAALAVL 163

>d1prxa_ c.47.1.10 (A:) 1-Cys peroxiredoxin {Human (Homo sapiens) [TaxId: 9606]} Length = 220

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: 1-Cys peroxiredoxin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 90.6 bits (224), Expect = 3e-23
 Identities = 31/160 (19%), Positives = 59/160 (36%), Gaps = 17/160 (10%)

Query: 71  GQAPPSFTLKDQEGRNVSLSKFKG-KPVVVYFYPADETPGCTKQACAFRDSYEKFKKAGA 129
           G   P+F      G  +    F G    +++ +P D TP CT +         +F K   
Sbjct: 4   GDVAPNFEANTTVG-RIRFHDFLGDSWGILFSHPRDFTPVCTTELGRAAKLAPEFAKRNV 62

Query: 130 EVIGISGDDSSSHKAFAKKYR----------LPYTLLSDEGNKVRKEWGVPADFFGSLPG 179
           ++I +S D    H A++K             LP+ ++ D   ++    G+         G
Sbjct: 63  KLIALSIDSVEDHLAWSKDINAYNSEEPTEKLPFPIIDDRNRELAILLGMLDPAEKDEKG 122

Query: 180 -----RQTYILDKNGVVQLIYNNQFQPEKHIDETLKFLQS 214
                R  ++   +  ++L         ++ DE L+ + S
Sbjct: 123 MPVTARVVFVFGPDKKLKLSILYPATTGRNFDEILRVVIS 162

>d1xcca_ c.47.1.10 (A:) 1-Cys peroxiredoxin {Plasmodium yoelii yoelii [TaxId: 73239]} Length = 219

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: 1-Cys peroxiredoxin
species: Plasmodium yoelii yoelii [TaxId: 73239]

 Score = 89.5 bits (221), Expect = 1e-22
 Identities = 29/158 (18%), Positives = 60/158 (37%), Gaps = 14/158 (8%)

Query: 71  GQAPPSFTLKDQEGRN-VSLSKF-KGKPVVVYFYPADETPGCTKQACAFRDSYEKFKKAG 128
           G   P+FT K         L K+ +    +++ +P D TP CT +       +E F K  
Sbjct: 5   GATFPNFTAKASGIDGDFELYKYIENSWAILFSHPNDFTPVCTTELAELGKMHEDFLKLN 64

Query: 129 AEVIGISGDDSSSHKAFAKKYR-------LPYTLLSDEGNKVRKEWGVPADFFGSLPG-- 179
            ++IG S +   SH  + +  +           ++ DE  ++  +  +  +    + G  
Sbjct: 65  CKLIGFSCNSKESHDKWIEDIKYYGKLNKWEIPIVCDESRELANKLKIMDEQEKDITGLP 124

Query: 180 ---RQTYILDKNGVVQLIYNNQFQPEKHIDETLKFLQS 214
              R  + +     ++          ++  E L+ L+S
Sbjct: 125 LTCRCLFFISPEKKIKATVLYPATTGRNAHEILRVLKS 162

>d2bmxa1 c.47.1.10 (A:2-170) Alkyl hydroperoxide reductase AhpC {Mycobacterium tuberculosis [TaxId: 1773]} Length = 169

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Alkyl hydroperoxide reductase AhpC
species: Mycobacterium tuberculosis [TaxId: 1773]

 Score = 86.3 bits (212), Expect = 6e-22
 Identities = 37/163 (22%), Positives = 71/163 (43%), Gaps = 21/163 (12%)

Query: 71  GQAPPSFTLKDQEG---------------RNVSLSKFKGKPVVVYFYPADETPGCTKQAC 115
           G   P++ L    G                 ++  +  GK  VV+F+P D T  C  +  
Sbjct: 6   GDQFPAYQLTALIGGDLSKVDAKQPGDYFTTITSDEHPGKWRVVFFWPKDFTFVCPTEIA 65

Query: 116 AFRDSYEKFKKAGAEVIGISGDDSSSHKAFAKKYR----LPYTLLSDEGNKVRKEWGVPA 171
           AF    ++F+   A+++G+S D   +H  +  ++     LP+ +LSD   ++ +  GV  
Sbjct: 66  AFSKLNDEFEDRDAQILGVSIDSEFAHFQWRAQHNDLKTLPFPMLSDIKRELSQAAGVLN 125

Query: 172 DFFGSLPGRQTYILDKNGVVQLIYNNQFQPEKHIDETLKFLQS 214
               +     T+I+D N  +Q +        +++DE L+ L +
Sbjct: 126 ADGVADRV--TFIVDPNNEIQFVSATAGSVGRNVDEVLRVLDA 166

>d1psqa_ c.47.1.10 (A:) Probable thiol peroxidase PsaD {Streptococcus pneumoniae [TaxId: 1313]} Length = 163

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Probable thiol peroxidase PsaD
species: Streptococcus pneumoniae [TaxId: 1313]

 Score = 84.2 bits (207), Expect = 3e-21
 Identities = 25/156 (16%), Positives = 59/156 (37%), Gaps = 6/156 (3%)

Query: 62  TSISAKVSKGQAPPSFTLKDQEGRNVSLSKFKGKPVVVYFYPADETPGCTKQACAFRDSY 121
           +    ++  G     F+L   +    SL+ F GK  V+   P+ +T  C+ Q   F +  
Sbjct: 10  SFTGKQLQVGDKALDFSLTTTDLSKKSLADFDGKKKVLSVVPSIDTGICSTQTRRFNEEL 69

Query: 122 EKFKKAGAEVIGISGDDSSSHKAFAKKYR--LPYTLLSDEGNKVRKEWGVPADFFGSLPG 179
                    V+ +S D   + K +           L     +   +++ +  + +  L  
Sbjct: 70  AGLDN--TVVLTVSMDLPFAQKRWCGAEGLDNAIMLSDYFDHSFGRDYALLINEW-HLLA 126

Query: 180 RQTYILDKNGVVQLI-YNNQFQPEKHIDETLKFLQS 214
           R  ++LD +  ++ + Y +    E + +  +   ++
Sbjct: 127 RAVFVLDTDNTIRYVEYVDNINSEPNFEAAIAAAKA 162

>d1qxha_ c.47.1.10 (A:) Thiol peroxidase Tpx {Escherichia coli [TaxId: 562]} Length = 164

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Thiol peroxidase Tpx
species: Escherichia coli [TaxId: 562]

 Score = 84.1 bits (207), Expect = 4e-21
 Identities = 28/148 (18%), Positives = 52/148 (35%), Gaps = 7/148 (4%)

Query: 68  VSKGQAPPSFTLKDQEGRNVSLSKFKGKPVVVYFYPADETPGCTKQACAFRDSYEKFKKA 127
              G    +FTL  ++  +V+L +F GK  V+  +P+ +T  C      F     +    
Sbjct: 18  PQAGSKAQTFTLVAKDLSDVTLGQFAGKRKVLNIFPSIDTGVCAASVRKFNQLATEIDN- 76

Query: 128 GAEVIGISGDDSSSHKAFAKKYRLPYTL--LSDEGNKVRKEWGVPADFFGSLPG--RQTY 183
              V+ IS D   +   F     L   +   +    +  + +GV            R   
Sbjct: 77  -TVVLCISADLPFAQSRFCGAEGLNNVITLSTFRNAEFLQAYGVAIADGPLKGLAARAVV 135

Query: 184 ILDKNGVVQLI-YNNQFQPEKHIDETLK 210
           ++D+N  V      ++   E   +  L 
Sbjct: 136 VIDENDNVIFSQLVDEITTEPDYEAALA 163

>d1xvqa_ c.47.1.10 (A:) Thiol peroxidase Tpx {Mycobacterium tuberculosis [TaxId: 1773]} Length = 166

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Thiol peroxidase Tpx
species: Mycobacterium tuberculosis [TaxId: 1773]

 Score = 81.9 bits (201), Expect = 2e-20
 Identities = 29/149 (19%), Positives = 55/149 (36%), Gaps = 7/149 (4%)

Query: 71  GQAPPSFTLKDQEGRNVSLSKFKGKPVVVYFYPADETPGCTKQACAFRDSYEKFKKAGAE 130
           G   P+FTL   +   +S  +F+GK V++  +P+ +TP C      F +           
Sbjct: 20  GSPAPAFTLTGGDLGVISSDQFRGKSVLLNIFPSVDTPVCATSVRTFDERAAASGA---T 76

Query: 131 VIGISGDDSSSHKAFAKKYRLPY-TLLSDEGNKVRKEWGVPADFFGSLPG--RQTYILDK 187
           V+ +S D   + K F            S   +   +++GV            R   ++  
Sbjct: 77  VLCVSKDLPFAQKRFCGAEGTENVMPASAFRDSFGEDYGVTIADGPMAGLLARAIVVIGA 136

Query: 188 NGVVQLI-YNNQFQPEKHIDETLKFLQSS 215
           +G V       +   E + +  L  L ++
Sbjct: 137 DGNVAYTELVPEIAQEPNYEAALAALGAT 165

>d2cx4a1 c.47.1.10 (A:4-163) Bacterioferritin comigratory protein {Archaeon Aeropyrum pernix [TaxId: 56636]} Length = 160

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Bacterioferritin comigratory protein
species: Archaeon Aeropyrum pernix [TaxId: 56636]

 Score = 78.2 bits (191), Expect = 5e-19
 Identities = 48/150 (32%), Positives = 73/150 (48%), Gaps = 6/150 (4%)

Query: 71  GQAPPSFTLKDQEGRNVSLSKF--KGKPVVVYFYPADETPGCTKQACAFRDSYEKFKKAG 128
           G+  P FTL +Q+   V+L +   +G+P V+ F+PA  +P CTK+ C FRD   + +KA 
Sbjct: 5   GEKAPDFTLPNQDFEPVNLYEVLKRGRPAVLIFFPAAFSPVCTKELCTFRDKMAQLEKAN 64

Query: 129 AEVIGISGDDSSSHKAFAKKYRLPYTLLSDEGNKVRKEWGV---PADFFGSLPGRQTYIL 185
           AEV+ IS D     K F  + RL + LLSD   +V K + V          +  R  +I+
Sbjct: 65  AEVLAISVDSPWCLKKFKDENRLAFNLLSDYNREVIKLYNVYHEDLKGLKMVAKRAVFIV 124

Query: 186 DKNGVVQLI-YNNQFQPEKHIDETLKFLQS 214
             +G V      +    E   DE ++    
Sbjct: 125 KPDGTVAYKWVTDNPLNEPDYDEVVREANK 154

>d1xvwa1 c.47.1.10 (A:1-153) Putative peroxiredoxin Rv2238c/MT2298 {Mycobacterium tuberculosis [TaxId: 1773]} Length = 153

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Putative peroxiredoxin Rv2238c/MT2298
species: Mycobacterium tuberculosis [TaxId: 1773]

 Score = 75.2 bits (183), Expect = 7e-18
 Identities = 38/150 (25%), Positives = 72/150 (48%), Gaps = 7/150 (4%)

Query: 71  GQAPPSFTLKDQEGRNVSLSKFKG-KPVVVYFYPADETPGCTKQACAFRDSYEKFKKAGA 129
           G   P FTL+DQ  + V+L  ++G K V++ F+P   T  C  +    RD   +F+   +
Sbjct: 5   GATAPDFTLRDQNQQLVTLRGYRGAKNVLLVFFPLAFTGICQGELDQLRDHLPEFENDDS 64

Query: 130 EVIGISGDDSSSHKAFAKKYRLPYTLLSDE--GNKVRKEWGVPADFFGSLPGRQTYILDK 187
             + IS     +HK +A +    + LLSD      V + +GV  +  G    R T+++D+
Sbjct: 65  AALAISVGPPPTHKIWATQSGFTFPLLSDFWPHGAVSQAYGVFNEQAGI-ANRGTFVVDR 123

Query: 188 NGVVQLIY---NNQFQPEKHIDETLKFLQS 214
           +G+++        + + ++   + L  L +
Sbjct: 124 SGIIRFAEMKQPGEVRDQRLWTDALAALTA 153

>d2a4va1 c.47.1.10 (A:59-214) Peroxiredoxin dot5 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 156

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Peroxiredoxin dot5
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 73.9 bits (180), Expect = 2e-17
 Identities = 42/149 (28%), Positives = 66/149 (44%), Gaps = 8/149 (5%)

Query: 71  GQAPPSFTLKDQEGRNVSLSKFKG--KPVVVYFYPADETPGCTKQACAFRDSYEKFKKAG 128
           G   P  +L +++  ++SL K     + VV + YP   TPG T+QA  FRD+Y++ K+  
Sbjct: 8   GDPIPDLSLLNEDNDSISLKKITENNRVVVFFVYPRASTPGSTRQASGFRDNYQELKEYA 67

Query: 129 AEVIGISGDDSSSHKAFAKKYRLPYTLLSDEGNKVRKEWGVPADFFGSLPGRQTYILDKN 188
             V G+S D  +S K F  K  LPY LLSD   +     G           R  +I   +
Sbjct: 68  -AVFGLSADSVTSQKKFQSKQNLPYHLLSDPKREFIGLLGAKKTPLSGSI-RSHFI-FVD 124

Query: 189 GVVQLIY---NNQFQPEKHIDETLKFLQS 214
           G ++      + +        E L+  + 
Sbjct: 125 GKLKFKRVKISPEVSVNDAKKEVLEVAEK 153

>d1nm3a2 c.47.1.10 (A:3-165) N-terminal, Prx domain of Hybrid-Prx5 {Haemophilus influenzae [TaxId: 727]} Length = 163

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: N-terminal, Prx domain of Hybrid-Prx5
species: Haemophilus influenzae [TaxId: 727]

 Score = 71.1 bits (173), Expect = 3e-16
 Identities = 28/159 (17%), Positives = 56/159 (35%), Gaps = 15/159 (9%)

Query: 71  GQAPPSFTLKDQEG---RNVSLSK-FKGKPVVVYFYPADETPGCTKQACAFRDSYEK--- 123
           G+  P  T + ++G    +V+ S+ F  K V+V+  P   TP C+       +       
Sbjct: 4   GKKVPQVTFRTRQGDKWVDVTTSELFDNKTVIVFSLPGAFTPTCSSSHLPRYNELAPVFK 63

Query: 124 FKKAGAEVIGISGDDSSSHKAFAKKYRLPYTLLSDEGNKVRKEWGVPADFFGSLPG---R 180
                  ++    D    +     +     + + D   +  +  G+         G    
Sbjct: 64  KYGVDDILVVSVNDTFVMNAWKEDEKSENISFIPDGNGEFTEGMGMLVGKEDLGFGKRSW 123

Query: 181 QTYILDKNGVVQLIYNNQFQPEKHIDET-----LKFLQS 214
           +  +L KNGVV+ ++    +P      +     LK+L  
Sbjct: 124 RYSMLVKNGVVEKMFIEPNEPGDPFKVSDADTMLKYLAP 162

>d2b7ka1 c.47.1.10 (A:111-279) Thioredoxin-like protein Sco1 (YpmQ), soluble domain {Baker's yeast(Saccharomyces cerevisiae) [TaxId: 4932]} Length = 169

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Thioredoxin-like protein Sco1 (YpmQ), soluble domain
species: Baker's yeast(Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 69.8 bits (169), Expect = 1e-15
 Identities = 22/164 (13%), Positives = 44/164 (26%), Gaps = 19/164 (11%)

Query: 70  KGQAPPSFTLKDQEGRNVSLSKFKGKPVVVYFYPADETPGCTKQACAFRDSYEKFKKAGA 129
           K      F L+D  G   +     GK  ++YF  ++    C  +                
Sbjct: 2   KPSLGGPFHLEDMYGNEFTEKNLLGKFSIIYFGFSNCPDICPDELDKLGLWLNTLSSKYG 61

Query: 130 EVIGISGDDSSSHKAFA----------KKYRLPYTLLSDEGNKVRKEWGV---------P 170
             +          +                 L  T   DE     K++ V         P
Sbjct: 62  ITLQPLFITCDPARDSPAVLKEYLSDFHPSILGLTGTFDEVKNACKKYRVYFSTPPNVKP 121

Query: 171 ADFFGSLPGRQTYILDKNGVVQLIYNNQFQPEKHIDETLKFLQS 214
              +        Y++D  G         +  +  +D+ ++ ++S
Sbjct: 122 GQDYLVDHSIFFYLMDPEGQFVDALGRNYDEKTGVDKIVEHVKS 165

>d2fy6a1 c.47.1.10 (A:33-175) Peptide methionine sulfoxide reductase MsrA/MsrB, N-terminal domain {Neisseria meningitidis serogroup A [TaxId: 65699]} Length = 143

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Peptide methionine sulfoxide reductase MsrA/MsrB, N-terminal domain
species: Neisseria meningitidis serogroup A [TaxId: 65699]

 Score = 67.6 bits (164), Expect = 3e-15
 Identities = 26/140 (18%), Positives = 45/140 (32%), Gaps = 2/140 (1%)

Query: 75  PSFTLKDQEGRNVSLSKFKGKPVVVYFYPADETPGCTKQACAFRDSYEKFKKAGAEVIGI 134
              TLK  + R  S+   K KP ++ F+ A   P C  +        +  K + A +I +
Sbjct: 4   TLSTLKTADNRPASVYLKKDKPTLIKFW-ASWCPLCLSELGQTEKWAQDAKFSSANLITV 62

Query: 135 SGDDSSSHKAFAKKYRLPYTLLSDEGNKVRKEWGVPADFFGSLPGRQTYILDKNGVVQLI 194
           +       K      +    L   +   V    G  A            ++ K+G VQ I
Sbjct: 63  ASPGFLHEKKDGDFQKWYAGLNYPKLPVVTDNGGTIAQSLNISVYPSWALIGKDGDVQRI 122

Query: 195 YNNQFQPEKHIDETLKFLQS 214
                  E      ++   +
Sbjct: 123 VKGS-INEAQALALIRDPNA 141

>d1hd2a_ c.47.1.10 (A:) Peroxiredoxin 5 {Human (Homo sapiens) [TaxId: 9606]} Length = 161

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Peroxiredoxin 5
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 66.9 bits (162), Expect = 1e-14
 Identities = 34/160 (21%), Positives = 62/160 (38%), Gaps = 11/160 (6%)

Query: 66  AKVSKGQAPPSFTLKD-QEGRNVSLSK-FKGKPVVVYFYPADETPGCTKQACAFRDSY-E 122
           A +  G A P+  + + + G  V+L++ FKGK  V++  P   TPGC+K          E
Sbjct: 1   APIKVGDAIPAVEVFEGEPGNKVNLAELFKGKKGVLFGVPGAFTPGCSKTHLPGFVEQAE 60

Query: 123 KFKKAGAEVIGISGDDS---SSHKAFAKKYRLPYTLLSDEGNKVRKEWGVPAD-----FF 174
             K  G +V+     +    +     A K      LL+D      KE  +  D      F
Sbjct: 61  ALKAKGVQVVACLSVNDAFVTGEWGRAHKAEGKVRLLADPTGAFGKETDLLLDDSLVSIF 120

Query: 175 GSLPGRQTYILDKNGVVQLIYNNQFQPEKHIDETLKFLQS 214
           G+   ++  ++ ++G+V+ +                 +  
Sbjct: 121 GNRRLKRFSMVVQDGIVKALNVEPDGTGLTCSLAPNIISQ 160

>d1lu4a_ c.47.1.10 (A:) Soluble secreted antigen MPT53 {Mycobacterium tuberculosis [TaxId: 1773]} Length = 134

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Soluble secreted antigen MPT53
species: Mycobacterium tuberculosis [TaxId: 1773]

 Score = 65.0 bits (157), Expect = 3e-14
 Identities = 24/143 (16%), Positives = 42/143 (29%), Gaps = 10/143 (6%)

Query: 71  GQAPPSFTLKDQEGRNVSLSKFKGKPVVVYFYPADETPGCTKQACAFRDSYEKFKKAGAE 130
                 FT     G     +  +GKP V++F+                        A   
Sbjct: 1   ADERLQFTATTLSGAPFDGASLQGKPAVLWFWTPWCPF--CNAEAPSLSQVAAANPAVTF 58

Query: 131 VIGISGDDSSSHKAFAKKYRLPYTLLSDEGNKVRKEWGVPADFFGSLPGRQTYILDKNGV 190
           V   +  D  + ++F  KY L +T L+D    +   + VP       P         +G 
Sbjct: 59  VGIATRADVGAMQSFVSKYNLNFTNLNDADGVIWARYNVPW-----QP--AFVFYRADGT 111

Query: 191 VQLIYNNQ-FQPEKHIDETLKFL 212
              + N      +  +   +  L
Sbjct: 112 STFVNNPTAAMSQDELSGRVAAL 134

>d1wp0a1 c.47.1.10 (A:138-297) Thioredoxin-like protein Sco1 (YpmQ), soluble domain {Human (Homo sapiens) [TaxId: 9606]} Length = 160

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Thioredoxin-like protein Sco1 (YpmQ), soluble domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 65.5 bits (158), Expect = 3e-14
 Identities = 16/156 (10%), Positives = 45/156 (28%), Gaps = 19/156 (12%)

Query: 77  FTLKDQEGRNVSLSKFKGKPVVVYFYPADETPGCTKQACAFRDSYEKFKKAGAEV----- 131
           F+L    G   +   + G+ +++YF        C ++        ++             
Sbjct: 3   FSLTTHTGERKTDKDYLGQWLLIYFGFTHCPDVCPEELEKMIQVVDEIDSITTLPDLTPL 62

Query: 132 ---IGISGDDSSSHKAFAKKYR---LPYTLLSDEGNKVRKEWGVPADFFGSLPG------ 179
              I    D   +   + K++    +  T   +E ++V + + V                
Sbjct: 63  FISIDPERDTKEAIANYVKEFSPKLVGLTGTREEVDQVARAYRVYYSPGPKDEDEDYIVD 122

Query: 180 --RQTYILDKNGVVQLIYNNQFQPEKHIDETLKFLQ 213
                Y++  +G     +    +  +        ++
Sbjct: 123 HTIIMYLIGPDGEFLDYFGQNKRKGEIAASIATHMR 158

>d2b5xa1 c.47.1.10 (A:1-143) thiol:disulfide oxidoreductase YkuV {Bacillus subtilis [TaxId: 1423]} Length = 143

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: thiol:disulfide oxidoreductase YkuV
species: Bacillus subtilis [TaxId: 1423]

 Score = 63.0 bits (152), Expect = 2e-13
 Identities = 19/147 (12%), Positives = 45/147 (30%), Gaps = 16/147 (10%)

Query: 71  GQAPPSFTLKDQ--EGRNVSLSKFKGKPVVVYFYPADETPGCTKQACAFRDSYEKFKKAG 128
            Q  P  T +     G          KP +++F+ +     C +      +  +K++   
Sbjct: 4   RQPMPELTGEKAWLNGEVTREQLIGEKPTLIHFW-SISCHLCKEAMPQVNEFRDKYQDQL 62

Query: 129 AEVIGISGDDS-----SSHKAFAKKYRLPYTLLSDEGNKVRKEWGVPADFFGSLPGRQTY 183
             V                K  A ++ +   +  D  + +   +         +P    Y
Sbjct: 63  NVVAVHMPRSEDDLDPGKIKETAAEHDITQPIFVDSDHALTDAFENE-----YVP--AYY 115

Query: 184 ILDKNGVVQLIYNNQFQPEKHIDETLK 210
           + DK G ++          K +++ + 
Sbjct: 116 VFDKTGQLRHFQAG-GSGMKMLEKRVN 141

>d1xzoa1 c.47.1.10 (A:3-174) Thioredoxin-like protein Sco1 (YpmQ), soluble domain {Bacillus subtilis [TaxId: 1423]} Length = 172

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Thioredoxin-like protein Sco1 (YpmQ), soluble domain
species: Bacillus subtilis [TaxId: 1423]

 Score = 63.1 bits (152), Expect = 4e-13
 Identities = 34/158 (21%), Positives = 56/158 (35%), Gaps = 20/158 (12%)

Query: 75  PSFTLKDQEGRNVSLSKFKGKPVVVYFYPADETPGCTKQACAFRDSYEKFKKAGAEVIGI 134
             FT ++Q+G+NVSL   KG+  +  F   +    C        D  +K K    +V  I
Sbjct: 12  EPFTFQNQDGKNVSLESLKGEVWLADFIFTNCETICPPMTAHMTDLQKKLKAENIDVRII 71

Query: 135 SG------DDSSSHKAFAKKYRLPY---TLLSDEGNKVRKEWGV---------PADFFGS 176
           S       D     K FA  Y L +     L+       +E+ +         P      
Sbjct: 72  SFSVDPENDKPKQLKKFAANYPLSFDNWDFLTGYSQSEIEEFALKSFKAIVKKPEGEDQV 131

Query: 177 LPGRQTYILDKNGVVQLIYNNQFQPEKHIDETLKFLQS 214
           +     Y++  +G V   YN         D+ +  ++S
Sbjct: 132 IHQSSFYLVGPDGKVLKDYNGVE--NTPYDDIISDVKS 167

>d1st9a_ c.47.1.10 (A:) Thiol-disulfide oxidoreductase ResA {Bacillus subtilis [TaxId: 1423]} Length = 137

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Thiol-disulfide oxidoreductase ResA
species: Bacillus subtilis [TaxId: 1423]

 Score = 59.5 bits (142), Expect = 3e-12
 Identities = 27/143 (18%), Positives = 49/143 (34%), Gaps = 8/143 (5%)

Query: 71  GQAPPSFTLKDQEGRNVSLSKFKGKPVVVYFYPADETPGCTKQACAFRDSYEKFKKAGAE 130
           G   P+F L+D  G+ + LS  KGK V + F+     P   +             +    
Sbjct: 2   GSDAPNFVLEDTNGKRIELSDLKGKGVFLNFWGTWCEPCKKEFPYMANQYKHFKSQGVEI 61

Query: 131 VIGISGDDSSSHKAFAKKYRLPYTLLSDEGNKVRKEWGVPADFFGSLPGRQTYILDKNGV 190
           V    G+   +   F K Y + +         V        D +   P   T++++  G 
Sbjct: 62  VAVNVGESKIAVHNFMKSYGVNF-------PVVLDTDRQVLDAYDVSPLPTTFLINPEGK 114

Query: 191 VQLIYNNQFQPEKHIDETLKFLQ 213
           V  +       E  I + +  ++
Sbjct: 115 VVKVVTG-TMTESMIHDYMNLIK 136

>d1jfua_ c.47.1.10 (A:) Membrane-anchored thioredoxin-like protein TlpA, soluble domain {Bradyrhizobium japonicum [TaxId: 375]} Length = 176

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Membrane-anchored thioredoxin-like protein TlpA, soluble domain
species: Bradyrhizobium japonicum [TaxId: 375]

 Score = 58.5 bits (140), Expect = 2e-11
 Identities = 22/148 (14%), Positives = 45/148 (30%), Gaps = 7/148 (4%)

Query: 69  SKGQAPPSFTLKDQEGRNVSLSKFKGKPVVVYFYPADETPGCTKQACAFRDSYEKFKKAG 128
           S     P    +D +G+   LS F+GK ++V  +     P   +         +      
Sbjct: 31  SAPLKLPDLAFEDADGKPKKLSDFRGKTLLVNLWATWCVPCRKEMPALDELQGKLSGPNF 90

Query: 129 AEVIGISGDDSSS--HKAFAKKYRLPYTLLSDEGNKVRKEWGVPADFFGSLPGRQTYILD 186
             V                 +         +D+  KV ++        G +P   + ++D
Sbjct: 91  EVVAINIDTRDPEKPKTFLKEANLTRLGYFNDQKAKVFQDLKAIGRALG-MP--TSVLVD 147

Query: 187 KNGVVQLIYNNQFQPEKHIDETLKFLQS 214
             G            E   ++ LK +++
Sbjct: 148 PQGCEIATIAGPA--EWASEDALKLIRA 173

>d1zzoa1 c.47.1.10 (A:45-178) Lipoprotein DsbF {Mycobacterium tuberculosis [TaxId: 1773]} Length = 134

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Lipoprotein DsbF
species: Mycobacterium tuberculosis [TaxId: 1773]

 Score = 56.6 bits (135), Expect = 4e-11
 Identities = 25/140 (17%), Positives = 44/140 (31%), Gaps = 10/140 (7%)

Query: 73  APPSFTLKDQEGRNVSLSKFKGKPVVVYFYPADETPGCTKQACAFRDSYEKFKKAGAEVI 132
           A   F+ K  +G +       GKP V++F+ A   P C  +A           +     +
Sbjct: 4   AQLQFSAKTLDGHDFHGESLLGKPAVLWFW-APWCPTCQGEAPVVGQVAASHPEVTFVGV 62

Query: 133 GISGDDSSSHKAFAKKYRLPYTLLSDEGNKVRKEWGVPADFFGSLPGRQTYILDKNGVVQ 192
                  +  +   K     +T L+D    V   +GV        P      +D +G V 
Sbjct: 63  AGLDQVPAMQEFVNKYPVKTFTQLADTDGSVWANFGVTQ-----QP--AYAFVDPHGNVD 115

Query: 193 LIYNNQFQPEKHIDETLKFL 212
                    +  +   +  L
Sbjct: 116 --VVRGRMSQDELTRRVTAL 133

>d1i5ga_ c.47.1.10 (A:) Tryparedoxin II {Crithidia fasciculata [TaxId: 5656]} Length = 144

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Tryparedoxin II
species: Crithidia fasciculata [TaxId: 5656]

 Score = 56.4 bits (135), Expect = 6e-11
 Identities = 21/119 (17%), Positives = 38/119 (31%), Gaps = 10/119 (8%)

Query: 74  PPSFTLKDQEGRNVSLSKFKGKPVVVYFYPADETPGCTKQACAFRDSYEKFKKAGAEVIG 133
           P S  +      +++L    GK V  YF  +   P                +K   EV+ 
Sbjct: 8   PYSTNVLKGAAADIALPSLAGKTVFFYFSASWCPPSRAFTPQLIDFYKAHAEKKNFEVML 67

Query: 134 ISGDDSSSH-KAFAKKYRLPYTLLSDEG--NKVRKEWGVPADFFGSLPGRQTYILDKNG 189
           IS D+S+   K +  K         D      +   + V +     +P      ++ + 
Sbjct: 68  ISWDESAEDFKDYYAKMPWLALPFEDRKGMEFLTTGFDVKS-----IP--TLVGVEADS 119

>d1tp9a1 c.47.1.10 (A:1-162) Plant peroxiredoxin {Western balsam poplar(Populus trichocarpa) [TaxId: 3694]} Length = 162

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Plant peroxiredoxin
species: Western balsam poplar(Populus trichocarpa) [TaxId: 3694]

 Score = 56.5 bits (135), Expect = 8e-11
 Identities = 27/162 (16%), Positives = 50/162 (30%), Gaps = 16/162 (9%)

Query: 66  AKVSKGQAPPSFTLK----DQEGRNVSLSK-FKGKPVVVYFYPADETPGCTKQACAFRDS 120
           A ++ G   P   L       + + VS+     GK V+++  P   TP C+ +       
Sbjct: 2   APIAVGDVLPDGKLAYFDEQDQLQEVSVHSLVAGKKVILFGVPGAFTPTCSLKHVPGFIE 61

Query: 121 YEKFKKA----GAEVIGISGDDSSSHKAFAKKYRLPYTLLSDEGNKVRKEWGVPAD---- 172
                K+        I ++        A +         L+D         G+  D    
Sbjct: 62  KAGELKSKGVTEILCISVNDPFVMKAWAKSYPENKHVKFLADGSATYTHALGLELDLQEK 121

Query: 173 FFGSLPGRQTYILDKNGVVQLIYNNQFQPEK--HIDETLKFL 212
             G+   R   ++D +  V+               ++ LK L
Sbjct: 122 GLGTRSRRFALLVD-DLKVKAANIEGGGEFTVSSAEDILKDL 162

>d1o73a_ c.47.1.10 (A:) Tryparedoxin I {Trypanosoma brucei brucei [TaxId: 5702]} Length = 144

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Tryparedoxin I
species: Trypanosoma brucei brucei [TaxId: 5702]

 Score = 53.8 bits (128), Expect = 4e-10
 Identities = 23/118 (19%), Positives = 39/118 (33%), Gaps = 10/118 (8%)

Query: 75  PSFTLKDQEGRNVSLSKFKGKPVVVYFYPADETPGCTKQACAFRDSYEKFKKAGAEVIGI 134
           P  T    +   VSL    GK V +YF  +   P             +       EV+ I
Sbjct: 9   PGATNLLSKSGEVSLGSLVGKTVFLYFSASWCPPCRGFTPVLAEFYEKHHVAKNFEVVLI 68

Query: 135 SGDDSSSHKAFAKKYRLPYTLLSD---EGNKVRKEWGVPADFFGSLPGRQTYILDKNG 189
           S D++ S             L  D     +++ K +GV +     +P      ++ + 
Sbjct: 69  SWDENESDFHDYYGKMPWLALPFDQRSTVSELGKTFGVES-----IP--TLITINADT 119

>d2cvba1 c.47.1.10 (A:2-188) Probable thiol-disulfide isomerase/thioredoxin TTHA0593 {Thermus thermophilus [TaxId: 274]} Length = 187

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Probable thiol-disulfide isomerase/thioredoxin TTHA0593
species: Thermus thermophilus [TaxId: 274]

 Score = 48.4 bits (114), Expect = 7e-08
 Identities = 21/128 (16%), Positives = 39/128 (30%), Gaps = 13/128 (10%)

Query: 71  GQAPPSFTLKDQEGRNVSLSKFKGKPVVVYF------YPADETPGCTKQACAFRDSYEKF 124
                   L D  G    LS+F    + V F      Y           A  +R      
Sbjct: 9   ESPLIDAELPDPRGGRYRLSQFHEPLLAVVFMCNHCPYVKGSIGELVALAERYRGKVAFV 68

Query: 125 KKAGAEVIGISGDDSSSHKAFAKKYRLPYTLLSDEGNKVRKEWGVPADFFGSLPGRQTYI 184
                +      D      AFA+++ + +  L DE  +V K +             + ++
Sbjct: 69  GINANDYEKYPEDAPEKMAAFAEEHGIFFPYLLDETQEVAKAYRALRT-------PEVFL 121

Query: 185 LDKNGVVQ 192
            D+  +++
Sbjct: 122 FDERRLLR 129

>d1o8xa_ c.47.1.10 (A:) Tryparedoxin I {Crithidia fasciculata [TaxId: 5656]} Length = 144

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Tryparedoxin I
species: Crithidia fasciculata [TaxId: 5656]

 Score = 47.0 bits (110), Expect = 2e-07
 Identities = 18/118 (15%), Positives = 34/118 (28%), Gaps = 10/118 (8%)

Query: 75  PSFTLKDQEGRNVSLSKFKGKPVVVYFYPADETPGCTKQACAFRDSYEKFKKAGAEVIGI 134
           P      +    V +    GK V  YF  +   P             +  +    EV+  
Sbjct: 7   PGIEKLRRGDGEVEVKSLAGKLVFFYFSASWCPPARGFTPQLIEFYDKFHESKNFEVVFC 66

Query: 135 SGDDSSSHKAFAKKYRLPYTL---LSDEGNKVRKEWGVPADFFGSLPGRQTYILDKNG 189
           + D+     A          +    S+   K+ K + V +     +P      +D + 
Sbjct: 67  TWDEEEDGFAGYFAKMPWLAVPFAQSEAVQKLSKHFNVES-----IP--TLIGVDADS 117

>d1xiya1 c.47.1.10 (A:2-180) 1-Cys peroxiredoxin {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]} Length = 179

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: 1-Cys peroxiredoxin
species: Malaria parasite (Plasmodium falciparum) [TaxId: 5833]

 Score = 44.7 bits (105), Expect = 1e-06
 Identities = 26/140 (18%), Positives = 51/140 (36%), Gaps = 16/140 (11%)

Query: 92  FKGKPVVVYFYPADETPGCTK-QACAFRDSYEKFKKAGA--EVIGISGDDSSSHKAFAKK 148
           F  K +++   P   TP C+      + + Y+ F K     ++  I+ +D    K++ K 
Sbjct: 40  FNNKKILLISLPGAFTPTCSTKMIPGYEEEYDYFIKENNFDDIYCITNNDIYVLKSWFKS 99

Query: 149 YRLPYTLLSDEGN-----KVRKEWGVPADFFGSLPGRQTYILDKNGVVQLIYNNQFQPEK 203
             +       +GN      +         F G  P R   I++ N +V++      Q   
Sbjct: 100 MDIKKIKYISDGNSSFTDSMNMLVDKSNFFMGMRPWRFVAIVENNILVKMFQEKDKQHNI 159

Query: 204 HIDET--------LKFLQSS 215
             D           +FL+++
Sbjct: 160 QTDPYDISTVNNVKEFLKNN 179

>d1z5ye1 c.47.1.10 (E:49-184) Thioredoxin-like protein CcmG (CycY, DsbE) {Escherichia coli [TaxId: 562]} Length = 136

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Thioredoxin-like protein CcmG (CycY, DsbE)
species: Escherichia coli [TaxId: 562]

 Score = 39.6 bits (91), Expect = 4e-05
 Identities = 21/131 (16%), Positives = 45/131 (34%), Gaps = 12/131 (9%)

Query: 81  DQEGRNVSLSKF-KGKPVVVYFYPADETPGCTKQACAFRDSYEKFKKAGAEVIGISGDDS 139
           D  G+        +GKPV++  +       C       +   +   +    V     DD 
Sbjct: 6   DNPGQFYQADVLTQGKPVLLNVW----ATWCPTSRAEHQYLNQLSAQGIRVVGMNYKDDR 61

Query: 140 SSHKAFAKKYRLPYTLLSDEGNKVRKEWGVPADFFGSLPGRQTYILDKNGVVQLIYNNQF 199
               ++ K+   PY         +    G+     G     +T+++D NG+++  +    
Sbjct: 62  QKAISWLKELGNPYA------LSLFDGDGMLGLDLGVYGAPETFLIDGNGIIRYRHAG-D 114

Query: 200 QPEKHIDETLK 210
              +  +E +K
Sbjct: 115 LNPRVWEEEIK 125

>d1knga_ c.47.1.10 (A:) Thioredoxin-like protein CcmG (CycY, DsbE) {Bradyrhizobium japonicum [TaxId: 375]} Length = 144

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Thioredoxin-like protein CcmG (CycY, DsbE)
species: Bradyrhizobium japonicum [TaxId: 375]

 Score = 39.7 bits (91), Expect = 5e-05
 Identities = 23/145 (15%), Positives = 48/145 (33%), Gaps = 20/145 (13%)

Query: 75  PSFTLKDQEG--------RNVSLSKFKGKPVVVYFYPADETPGCTKQACAFRDSYEKFKK 126
           P   L   EG          +  + FKGK  +V  +       C           E  K 
Sbjct: 4   PQTALPPLEGLQADNVQVPGLDPAAFKGKVSLVNVWA----SWCVPCHDEAPLLTELGKD 59

Query: 127 AGAEVIGIS-GDDSSSHKAFAKKYRLPYTLLSDEGNKVRKEWGVPADFFGSLPGRQTYIL 185
              +++GI+  D + + + F  +Y  P+  +  +        G  +  +G     +T+++
Sbjct: 60  KRFQLVGINYKDAADNARRFLGRYGNPFGRVGVD------ANGRASIEWGVYGVPETFVV 113

Query: 186 DKNGVVQLIYNNQFQPEKHIDETLK 210
            + G +            ++   L 
Sbjct: 114 GREGTIVYKLVG-PITPDNLRSVLL 137

>d1xwaa_ c.47.1.1 (A:) Thioredoxin {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 111

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

 Score = 34.9 bits (79), Expect = 0.002
 Identities = 11/46 (23%), Positives = 18/46 (39%)

Query: 73  APPSFTLKDQEGRNVSLSKFKGKPVVVYFYPADETPGCTKQACAFR 118
           A   + +KD+   +  L+K  GK VV+ F+     P          
Sbjct: 4   AAMVYQVKDKADLDGQLTKASGKLVVLDFFATWCGPCKMISPKLVE 49

>d2fwha1 c.47.1.1 (A:428-544) Thiol:disulfide interchange protein DsbD, C-terminal domain (DsbD-gamma) {Escherichia coli [TaxId: 562]} Length = 117

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thiol:disulfide interchange protein DsbD, C-terminal domain (DsbD-gamma)
species: Escherichia coli [TaxId: 562]

 Score = 34.6 bits (78), Expect = 0.002
 Identities = 21/98 (21%), Positives = 38/98 (38%), Gaps = 8/98 (8%)

Query: 78  TLKDQEGRNVSLSKFKGKPVVVYFYPADETPGCTKQACAFRDSYEKFKKAGAEVIGISGD 137
            +K  +  N +L + KGKPV++  Y          +   F D   + +KA A+ + +  +
Sbjct: 6   QIKTVDELNQALVEAKGKPVMLDLYADWCVACKEFEKYTFSD--PQVQKALADTVLLQAN 63

Query: 138 ---DSSSHKAFAKKY---RLPYTLLSDEGNKVRKEWGV 169
              + +   A  K      LP  L  D   +   +  V
Sbjct: 64  VTANDAQDVALLKHLNVLGLPTILFFDGQGQEHPQARV 101

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	215
d2bmxa1	169	Alkyl hydroperoxide reductase AhpC {Mycobacterium	99.98
d1we0a1	166	Alkyl hydroperoxide reductase AhpC {Amphibacillus	99.98
d1e2ya_	167	Tryparedoxin peroxidase (thioredoxin peroxidase ho	99.97
d1uula_	194	Tryparedoxin peroxidase (thioredoxin peroxidase ho	99.97
d1zyea1	158	Peroxiredoxin-3 (AOP-1, SP-22) {Cow (Bos taurus) [	99.97
d2cx4a1	160	Bacterioferritin comigratory protein {Archaeon Aer	99.97
d1st9a_	137	Thiol-disulfide oxidoreductase ResA {Bacillus subt	99.97
d1xvwa1	153	Putative peroxiredoxin Rv2238c/MT2298 {Mycobacteri	99.97
d1qmva_	197	Thioredoxin peroxidase 2 (thioredoxin peroxidase B	99.97
d1n8ja_	186	Alkyl hydroperoxide reductase AhpC {Salmonella typ	99.97
d1zofa1	170	Thioredoxin reductase TsaA {Helicobacter pylori [T	99.96
d2cvba1	187	Probable thiol-disulfide isomerase/thioredoxin TTH	99.96
d2a4va1	156	Peroxiredoxin dot5 {Baker's yeast (Saccharomyces c	99.96
d2zcta1	237	Peroxiredoxin {Aeropyrum pernix [TaxId: 56636]}	99.96
d1lu4a_	134	Soluble secreted antigen MPT53 {Mycobacterium tube	99.96
d1prxa_	220	1-Cys peroxiredoxin {Human (Homo sapiens) [TaxId:	99.96
d1psqa_	163	Probable thiol peroxidase PsaD {Streptococcus pneu	99.96
d1qxha_	164	Thiol peroxidase Tpx {Escherichia coli [TaxId: 562	99.96
d1xvqa_	166	Thiol peroxidase Tpx {Mycobacterium tuberculosis [	99.96
d1jfua_	176	Membrane-anchored thioredoxin-like protein TlpA, s	99.95
d1xcca_	219	1-Cys peroxiredoxin {Plasmodium yoelii yoelii [Tax	99.95
d2b5xa1	143	thiol:disulfide oxidoreductase YkuV {Bacillus subt	99.95
d1q98a_	164	Thiol peroxidase Tpx {Haemophilus influenzae [TaxI	99.95
d2h01a1	170	Thioredoxin peroxidase 2 (thioredoxin peroxidase B	99.95
d1zzoa1	134	Lipoprotein DsbF {Mycobacterium tuberculosis [TaxI	99.94
d1knga_	144	Thioredoxin-like protein CcmG (CycY, DsbE) {Bradyr	99.93
d2fy6a1	143	Peptide methionine sulfoxide reductase MsrA/MsrB,	99.92
d1z5ye1	136	Thioredoxin-like protein CcmG (CycY, DsbE) {Escher	99.91
d1o73a_	144	Tryparedoxin I {Trypanosoma brucei brucei [TaxId:	99.91
d1xzoa1	172	Thioredoxin-like protein Sco1 (YpmQ), soluble doma	99.9
d1i5ga_	144	Tryparedoxin II {Crithidia fasciculata [TaxId: 565	99.89
d2f8aa1	184	Glutathione peroxidase {Human (Homo sapiens) [TaxI	99.88
d1o8xa_	144	Tryparedoxin I {Crithidia fasciculata [TaxId: 5656	99.88
d1hd2a_	161	Peroxiredoxin 5 {Human (Homo sapiens) [TaxId: 9606	99.88
d1tp9a1	162	Plant peroxiredoxin {Western balsam poplar(Populus	99.84
d1wp0a1	160	Thioredoxin-like protein Sco1 (YpmQ), soluble doma	99.84
d2b7ka1	169	Thioredoxin-like protein Sco1 (YpmQ), soluble doma	99.8
d1nm3a2	163	N-terminal, Prx domain of Hybrid-Prx5 {Haemophilus	99.78
d1xiya1	179	1-Cys peroxiredoxin {Malaria parasite (Plasmodium	99.71
d1xwaa_	111	Thioredoxin {Fruit fly (Drosophila melanogaster) [	99.51
d1nw2a_	105	Thioredoxin {Alicyclobacillus acidocaldarius, form	99.44
d1dbya_	107	Thioredoxin {Chlamydomonas reinhardtii [TaxId: 305	99.44
d1a8la2	107	Protein disulfide isomerase, PDI {Archaeon Pyrococ	99.42
d1r26a_	113	Thioredoxin {Trypanosoma brucei [TaxId: 5691]}	99.42
d1gh2a_	107	Thioredoxin-like protein, N-terminal domain {Human	99.41
d1woua_	119	Putative 42-9-9 protein (thioredoxin containing pr	99.41
d1thxa_	108	Thioredoxin {Anabaena sp., pcc 7120 [TaxId: 1167]}	99.4
d1fb6a_	104	Thioredoxin {Spinach (Spinacia oleracea), thioredo	99.39
d1ep7a_	112	Thioredoxin {Chlamydomonas reinhardtii [TaxId: 305	99.38
d1xfla_	114	Thioredoxin {Thale cress (Arabidopsis thaliana) [T	99.38
d2trxa_	108	Thioredoxin {Escherichia coli [TaxId: 562]}	99.37
d2ifqa1	105	Thioredoxin {Human (Homo sapiens) [TaxId: 9606]}	99.37
d1f9ma_	112	Thioredoxin {Spinach (Spinacia oleracea), thioredo	99.37
d2fwha1	117	Thiol:disulfide interchange protein DsbD, C-termin	99.36
d1z6na1	166	Hypothetical protein PA1234 {Pseudomonas aeruginos	99.35
d1ti3a_	113	Thioredoxin {European aspen (Populus tremula), thi	99.34
d1syra_	103	Thioredoxin {Malarial parasite (Plasmodium falcipa	99.29
d2es7a1	119	Hydrogenase-1 operon protein HyaE {Salmonella typh	99.24
d1fo5a_	85	MJ0307, thioredoxin/glutaredoxin-like protein {Arc	99.22
d1qgva_	137	spliceosomal protein U5-15Kd {Human (Homo sapiens)	99.19
d2hfda1	132	Hydrogenase-1 operon protein HyaE {Escherichia col	99.19
d1nhoa_	85	MTH807, thioredoxin/glutaredoxin-like protein {Arc	99.18
d2b5ea4	119	Protein disulfide isomerase, PDI {Baker's yeast (S	99.15
d1zmaa1	115	Bacterocin transport accessory protein Bta {Strept	99.1
d1hyua4	96	Alkyl hydroperoxide reductase subunit F (AhpF), N-	99.08
d1sena_	135	Thioredoxin-like protein p19, TLP19 {Human (Homo s	99.01
d1meka_	120	Protein disulfide isomerase, PDI {Human (Homo sapi	98.97
d2b5ea1	140	Protein disulfide isomerase, PDI {Baker's yeast (S	98.95
d2dlxa1	147	UBX domain-containing protein 7 {Human (Homo sapie	98.94
d2c0ga2	122	Windbeutel, N-terminal domain {Fruit fly (Drosophi	98.77
d2djja1	116	Protein disulfide isomerase, PDI {Fungi (Humicola	98.72
d1a8ya1	124	Calsequestrin {Rabbit (Oryctolagus cuniculus) [Tax	98.65
d2trcp_	217	Phosducin {Rat (Rattus norvegicus) [TaxId: 10116]}	98.24
d1wjka_	100	Thioredoxin-like structure containing protein C330	98.17
d1v58a1	169	Thiol:disulfide interchange protein DsbG, C-termin	97.92
d1g7ea_	122	Endoplasmic reticulum protein ERP29, N-terminal do	97.53
d1eeja1	156	Disulfide bond isomerase, DsbC, C-terminal domain	97.3
d1fvka_	188	Disulfide-bond formation facilitator (DsbA) {Esche	97.1
d1z6ma1	172	Hypothetical protein EF0770 {Enterococcus faecalis	97.02
d1beda_	181	Disulfide-bond formation facilitator (DsbA) {Vibri	97.01
d1t3ba1	150	Disulfide bond isomerase, DsbC, C-terminal domain	96.66
d1r7ha_	74	Glutaredoxin-like NRDH-redoxin {Corynebacterium am	96.36
d1h75a_	76	Glutaredoxin-like NRDH-redoxin {Escherichia coli [	96.28
d1a8la1	119	Protein disulfide isomerase, PDI {Archaeon Pyrococ	94.77
d1pn0a2	201	Phenol hydroxylase, C-terminal domain {Soil-living	94.64
d1nm3a1	74	C-terminal, Grx domain of Hybrid-Prx5 {Haemophilus	94.34
d2axoa1	225	Hypothetical protein Atu2684 {Agrobacterium tumefa	93.43
d1iloa_	77	MTH985, a thioredoxin {Archaeon Methanobacterium t	92.8
d1fova_	82	Glutaredoxin (Grx, thioltransferase) {Escherichia	92.28
d2djka1	133	Protein disulfide isomerase, PDI {Fungi (Humicola	91.74
d1ttza_	75	Hypothetical protein XCC2852 {Xanthomonas campestr	91.5
d1egoa_	85	Glutaredoxin (Grx, thioltransferase) {Escherichia	90.42
d1un2a_	195	Disulfide-bond formation facilitator (DsbA) {Esche	90.42
d1wika_	109	Thioredoxin-like protein 2 {Mouse (Mus musculus) [	84.88
d1ktea_	105	Glutaredoxin (Grx, thioltransferase) {Pig (Sus scr	84.04
d2qy9a2	211	GTPase domain of the signal recognition particle r	84.02
d2b5ea3	125	Protein disulfide isomerase, PDI {Baker's yeast (S	83.61
d1z3ea1	114	Regulatory protein Spx {Bacillus subtilis [TaxId:	82.5
d1j8yf2	211	GTPase domain of the signal sequence recognition p	81.73

>d2bmxa1 c.47.1.10 (A:2-170) Alkyl hydroperoxide reductase AhpC {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Alkyl hydroperoxide reductase AhpC
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.98  E-value=4.8e-32  Score=205.33  Aligned_cols=146  Identities=26%  Similarity=0.453  Sum_probs=131.1

Q ss_pred             cCCCCCCCCCeEEeCCCC---------------CeeecCCcCCCcEEEEEEcCCCChhhHHHHHHHHHHHHHHHHcCcEE
Q 028030           67 KVSKGQAPPSFTLKDQEG---------------RNVSLSKFKGKPVVVYFYPADETPGCTKQACAFRDSYEKFKKAGAEV  131 (215)
Q Consensus        67 ~~~~g~~~P~f~l~~~~g---------------~~~~l~~~~gk~~ll~f~~a~~C~~C~~~~~~l~~l~~~~~~~~v~v  131 (215)
                      .+++|+++|+|++++.+|               +.+++++++||++||+||+++||+.|..+++.|++++++++++|+++
T Consensus         2 ~l~vGd~aPdF~l~~~~g~~~~~~~~~~~~~~~~~~~l~d~~GK~vvl~f~p~~~~p~C~~~~~~~~~~~~~~~~~g~~v   81 (169)
T d2bmxa1           2 LLTIGDQFPAYQLTALIGGDLSKVDAKQPGDYFTTITSDEHPGKWRVVFFWPKDFTFVCPTEIAAFSKLNDEFEDRDAQI   81 (169)
T ss_dssp             BCCTTCBCCCCEEEEECSSCGGGSCCSSGGGGEEEEETTSSTTCEEEEEECSCTTSCCCHHHHHHHHHTHHHHHTTTEEE
T ss_pred             CCCCCCCCCCCEEeeccCCcccccccccccccccEeeHHHHCCCeEEEEEecCCCCccccccccccccccccccccCcce
Confidence            478999999999998777               68899999999999999999999999999999999999999999999


Q ss_pred             EEEeCCCHHHHHHHHHHcC----CCeEEEEcCChhHHHHhCCCccCCCCCCccEEEEEcCCCcEEEEEeCCCCCCccHHH
Q 028030          132 IGISGDDSSSHKAFAKKYR----LPYTLLSDEGNKVRKEWGVPADFFGSLPGRQTYILDKNGVVQLIYNNQFQPEKHIDE  207 (215)
Q Consensus       132 v~vs~d~~~~~~~~~~~~~----~~~~~~~d~~~~~~~~~g~~~~~~g~~p~~~~~lid~~G~v~~~~~g~~~~~~~~~~  207 (215)
                      ++|+.|+.+..++|.+.++    ++|+++.|.+++++++||+....  ..+.|++||||++|+|++.+.+....+.++++
T Consensus        82 v~is~d~~~~~~~~~~~~~~~~~~~f~ll~D~~~~v~~~ygv~~~~--~~~~r~~fvID~~G~I~~~~~~~~~~~~~~~e  159 (169)
T d2bmxa1          82 LGVSIDSEFAHFQWRAQHNDLKTLPFPMLSDIKRELSQAAGVLNAD--GVADRVTFIVDPNNEIQFVSATAGSVGRNVDE  159 (169)
T ss_dssp             EEEESSCHHHHHHHHHHCTTGGGCCSCEEECTTSHHHHHHTCBCTT--SSBCEEEEEECTTSBEEEEEEECTTCCCCHHH
T ss_pred             eeccccchhhhhhhcccccccccceEEEEeccHHHHHHHcCCCccC--CccceeEEEEcCCCEEEEEEEcCCCCCCCHHH
Confidence            9999999999999999886    88999999999999999996432  23455999999999999998876666778889


Q ss_pred             HHHHHhc
Q 028030          208 TLKFLQS  214 (215)
Q Consensus       208 il~~l~~  214 (215)
                      +++.|++
T Consensus       160 vl~~l~a  166 (169)
T d2bmxa1         160 VLRVLDA  166 (169)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHH
Confidence            9988864

>d1we0a1 c.47.1.10 (A:1-166) Alkyl hydroperoxide reductase AhpC {Amphibacillus xylanus [TaxId: 1449]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Alkyl hydroperoxide reductase AhpC
species: Amphibacillus xylanus [TaxId: 1449]

Probab=99.98  E-value=4e-32  Score=205.17  Aligned_cols=143  Identities=27%  Similarity=0.425  Sum_probs=125.4

Q ss_pred             CCCCCCCeEEeC----CCCCeeecCCcCCCcEEEEEEcCCCChhhHHHHHHHHHHHHHHHHcCcEEEEEeCCCHHHHHHH
Q 028030           70 KGQAPPSFTLKD----QEGRNVSLSKFKGKPVVVYFYPADETPGCTKQACAFRDSYEKFKKAGAEVIGISGDDSSSHKAF  145 (215)
Q Consensus        70 ~g~~~P~f~l~~----~~g~~~~l~~~~gk~~ll~f~~a~~C~~C~~~~~~l~~l~~~~~~~~v~vv~vs~d~~~~~~~~  145 (215)
                      +|+++|+|++++    .++++++|++++||++||+||++.||++|..+++.|++++++++++|+++++||.|+++.+++|
T Consensus         3 vG~~aP~F~l~~~~~g~~~~~vslsd~~GK~vvl~F~p~~~~p~C~~e~~~~~~~~~~f~~~g~~vv~IS~D~~~~~~~~   82 (166)
T d1we0a1           3 IGTEVQPFRAQAFQSGKDFFEVTEADLKGKWSIVVFYPADFSFVCPTELEDVQKEYAELKKLGVEVYSVSTDTHFVHKAW   82 (166)
T ss_dssp             TTCBCCCCEEEEECSSSCCEEEETTTTSSSEEEEEECSCTTCSSCTHHHHHHHHHHHHHHHTTEEEEEEESSCHHHHHHH
T ss_pred             CCCcCCCCEEeeecCCcceeEeeHHHhCCCeEEEEEecccCCcHHHHHHHHHHHHHHhhcccceEEEecccccHHHHHHH
Confidence            799999999986    4556799999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHc----CCCeEEEEcCChhHHHHhCCCccCCCCCCccEEEEEcCCCcEEEEEeCCCCCCccHHHHHHHHh
Q 028030          146 AKKY----RLPYTLLSDEGNKVRKEWGVPADFFGSLPGRQTYILDKNGVVQLIYNNQFQPEKHIDETLKFLQ  213 (215)
Q Consensus       146 ~~~~----~~~~~~~~d~~~~~~~~~g~~~~~~g~~p~~~~~lid~~G~v~~~~~g~~~~~~~~~~il~~l~  213 (215)
                      .+++    +++|+++.|+++++.++||+.....| ++.|.+||||++|+|++.+.+......+.+++|+.|+
T Consensus        83 ~~~~~~~~~~~fpll~D~~~~v~~~ygv~~~~~~-~~~r~tfvID~~G~I~~~~i~~~~~~r~~~eil~~lk  153 (166)
T d1we0a1          83 HENSPAVGSIEYIMIGDPSQTISRQFDVLNEETG-LADRGTFIIDPDGVIQAIEINADGIGRDASTLINKVK  153 (166)
T ss_dssp             HHSCHHHHTCCSEEEECTTCHHHHHTTCEETTTT-EECEEEEEECTTSBEEEEEEECTTSCCCTTHHHHHHH
T ss_pred             hhhhhhhcccccccccCcccHHHHHhCCCccccC-cccceEEEECCCCcEEEEEEcCCCCCCCHHHHHHHHH
Confidence            8764    79999999999999999999754433 5667999999999999998776554456667776665

>d1e2ya_ c.47.1.10 (A:) Tryparedoxin peroxidase (thioredoxin peroxidase homologue) {Crithidia fasciculata [TaxId: 5656]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Tryparedoxin peroxidase (thioredoxin peroxidase homologue)
species: Crithidia fasciculata [TaxId: 5656]

Probab=99.97  E-value=5.2e-32  Score=204.77  Aligned_cols=147  Identities=27%  Similarity=0.494  Sum_probs=130.5

Q ss_pred             cCCCCCCCCCeE----EeCCCCCeeecCCcCCCcEEEEEEcCCCChhhHHHHHHHHHHHHHHHHcCcEEEEEeCCCHHHH
Q 028030           67 KVSKGQAPPSFT----LKDQEGRNVSLSKFKGKPVVVYFYPADETPGCTKQACAFRDSYEKFKKAGAEVIGISGDDSSSH  142 (215)
Q Consensus        67 ~~~~g~~~P~f~----l~~~~g~~~~l~~~~gk~~ll~f~~a~~C~~C~~~~~~l~~l~~~~~~~~v~vv~vs~d~~~~~  142 (215)
                      .+++|+++|+|+    +.|.+|+.++|+|++||++||+||+++||++|..+++.|++++++++++|+++++|+.|+.+..
T Consensus         2 ~~kvG~~APdF~~~~~l~d~~g~~vsLsd~~GK~vVl~F~p~~~c~~C~~e~~~l~~~~~~~~~~~~~v~~is~d~~~~~   81 (167)
T d1e2ya_           2 AAKLNHPAPEFDDMALMPNGTFKKVSLSSYKGKYVVLFFYPMDFTFVCPTEIIQFSDDAKRFAEINTEVISCSCDSEYSH   81 (167)
T ss_dssp             CCCTTSBCCCCEEEEECSSSCEEEEEGGGGTTSEEEEEECSCSSCSSCCHHHHHHHHTHHHHHTTTEEEEEEESSCHHHH
T ss_pred             CccCCCCCCCCcccccccCCCCcEEeHHHHCCCeEEEEEcccccccccchhhHHHHHHHHHhhcCceEEEeecCCcHHhH
Confidence            468999999999    5688999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHc-------CCCeEEEEcCChhHHHHhCCCccCCCCCCccEEEEEcCCCcEEEEEeCCCCCCccHHHHHHHHhc
Q 028030          143 KAFAKKY-------RLPYTLLSDEGNKVRKEWGVPADFFGSLPGRQTYILDKNGVVQLIYNNQFQPEKHIDETLKFLQS  214 (215)
Q Consensus       143 ~~~~~~~-------~~~~~~~~d~~~~~~~~~g~~~~~~g~~p~~~~~lid~~G~v~~~~~g~~~~~~~~~~il~~l~~  214 (215)
                      .+|.++.       .++++++.|+++++.+.|++.....| ++.|++||||++|+|++.+.++.....+.+++|+.|++
T Consensus        82 ~~~~~~~~~~~~~~~~~~~~l~d~~~~~~~~y~v~~~~~g-~~~r~tfvID~~G~Ir~~~~~~~~~~~~~~evL~~l~a  159 (167)
T d1e2ya_          82 LQWTSVDRKKGGLGPMAIPMLADKTKAIARAYGVLDEDSG-VAYRGVFIIDPNGKLRQIIINDMPIGRNVEEVIRLVEA  159 (167)
T ss_dssp             HHHHHSCGGGTCCCCCSSCEEECTTCHHHHHHTCEETTTT-EECEEEEEECTTSBEEEEEEECTTBCCCHHHHHHHHHH
T ss_pred             HHHHhhHHHhcccccccccccccchhHHHHHcCCCcccCC-CceeEEEEECCCCEEEEEEEcCCCCCCCHHHHHHHHHH
Confidence            9998754       36799999999999999999654434 56669999999999999987766556678888888763

>d1uula_ c.47.1.10 (A:) Tryparedoxin peroxidase (thioredoxin peroxidase homologue) {Trypanosoma cruzi [TaxId: 5693]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Tryparedoxin peroxidase (thioredoxin peroxidase homologue)
species: Trypanosoma cruzi [TaxId: 5693]

Probab=99.97  E-value=2.9e-31  Score=204.81  Aligned_cols=146  Identities=27%  Similarity=0.496  Sum_probs=132.6

Q ss_pred             CCCCCCCCCeE----EeCCCCCeeecCCcCCCcEEEEEEcCCCChhhHHHHHHHHHHHHHHHHcCcEEEEEeCCCHHHHH
Q 028030           68 VSKGQAPPSFT----LKDQEGRNVSLSKFKGKPVVVYFYPADETPGCTKQACAFRDSYEKFKKAGAEVIGISGDDSSSHK  143 (215)
Q Consensus        68 ~~~g~~~P~f~----l~~~~g~~~~l~~~~gk~~ll~f~~a~~C~~C~~~~~~l~~l~~~~~~~~v~vv~vs~d~~~~~~  143 (215)
                      .+.|.++|+|+    +.|.+|++++|+|++||++||+||+++||+.|..++..|+++++++++.|++|++||.|+.+.++
T Consensus         3 ae~~~PAPdFtl~a~l~d~~g~~vsLsd~~GK~vVL~FyP~~~t~~C~~E~~~f~~~~~~f~~~g~~VlgIS~Ds~~s~~   82 (194)
T d1uula_           3 AEDLHPAPDFNETALMPNGTFKKVALTSYKGKWLVLFFYPMDFTFVCPTEICQFSDRVKEFSDIGCEVLACSMDSEYSHL   82 (194)
T ss_dssp             CCTTSBCCCCEEEEECTTSCEEEEEGGGGTTSEEEEEECSCTTCSHHHHHHHHHHHTHHHHHTTTEEEEEEESSCHHHHH
T ss_pred             cccCCCCCCCcccccccCCCCcEEehHHhCCCeEEEEEEeCCccccchhhhhHHHhhhhhhccCceEEEEEecCchhhhh
Confidence            35788999999    55788999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHc-------CCCeEEEEcCChhHHHHhCCCccCCCCCCccEEEEEcCCCcEEEEEeCCCCCCccHHHHHHHHhc
Q 028030          144 AFAKKY-------RLPYTLLSDEGNKVRKEWGVPADFFGSLPGRQTYILDKNGVVQLIYNNQFQPEKHIDETLKFLQS  214 (215)
Q Consensus       144 ~~~~~~-------~~~~~~~~d~~~~~~~~~g~~~~~~g~~p~~~~~lid~~G~v~~~~~g~~~~~~~~~~il~~l~~  214 (215)
                      +|.+.+       +++|+++.|+++++.++||+.....| ++.|.+||||++|+|++.+.+......+++++|+.|+.
T Consensus        83 ~~~~~~~~~~~~~~l~fpllsD~~~~v~~~ygv~~~~~~-~~~R~tfvID~~G~I~~~~~~~~~~~r~~~E~Lr~l~a  159 (194)
T d1uula_          83 AWTSIERKRGGLGQMNIPILADKTKCIMKSYGVLKEEDG-VAYRGLFIIDPKQNLRQITVNDLPVGRDVDEALRLVKA  159 (194)
T ss_dssp             HHHHSCGGGTCCCSCSSCEEECTTCHHHHHHTCEETTTT-EECEEEEEECTTSBEEEEEEECTTBCCCHHHHHHHHHH
T ss_pred             hhhhhhhhhccccCCCcceeeCCcchHHHHcCCeeccCC-ceEEEEEEECCCCeEEEEEEecCCCCcCHHHHHHHHHH
Confidence            999865       57899999999999999999765444 56679999999999999998877888899999998864

>d1zyea1 c.47.1.10 (A:6-163) Peroxiredoxin-3 (AOP-1, SP-22) {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Peroxiredoxin-3 (AOP-1, SP-22)
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.97  E-value=7.4e-31  Score=196.65  Aligned_cols=142  Identities=32%  Similarity=0.532  Sum_probs=128.5

Q ss_pred             CCCCCeEEe---CCCCCeeecCCcCCCcEEEEEEcCCCChhhHHHHHHHHHHHHHHHHcCcEEEEEeCCCHHHHHHHHHH
Q 028030           72 QAPPSFTLK---DQEGRNVSLSKFKGKPVVVYFYPADETPGCTKQACAFRDSYEKFKKAGAEVIGISGDDSSSHKAFAKK  148 (215)
Q Consensus        72 ~~~P~f~l~---~~~g~~~~l~~~~gk~~ll~f~~a~~C~~C~~~~~~l~~l~~~~~~~~v~vv~vs~d~~~~~~~~~~~  148 (215)
                      +++|+|+++   +.+|++++|+|++||++||+|||+.||+.|..+++.|+++++++.+.|.++++||.|+.+.+++|++.
T Consensus         1 ~~AP~F~l~~~~~~~~~~vsL~d~~Gk~vVL~Fyp~~~tp~C~~e~~~~~~~~~~~~~~~~~vigIS~d~~~~~~~~~~~   80 (158)
T d1zyea1           1 QHAPYFKGTAVVSGEFKEISLDDFKGKYLVLFFYPLDFTFVCPTEIIAFSDKASEFHDVNCEVVAVSVDSHFSHLAWINT   80 (158)
T ss_dssp             SBCCCCEEEEECSSSEEEEEGGGGTTSEEEEEECSCTTCSSSHHHHHHHHHHHHHHHHTTEEEEEEESSCHHHHHHHHTS
T ss_pred             CCCCCCccceeeCCCccEEeHHHhCCCeEEEEEeehhcCCccccchhhHHHhHHHhhcCCceEEeccCcCHHHHHHHHhh
Confidence            468999977   45678999999999999999999999999999999999999999999999999999999999999986


Q ss_pred             c-------CCCeEEEEcCChhHHHHhCCCccCCCCCCccEEEEEcCCCcEEEEEeCCCCCCccHHHHHHHHhc
Q 028030          149 Y-------RLPYTLLSDEGNKVRKEWGVPADFFGSLPGRQTYILDKNGVVQLIYNNQFQPEKHIDETLKFLQS  214 (215)
Q Consensus       149 ~-------~~~~~~~~d~~~~~~~~~g~~~~~~g~~p~~~~~lid~~G~v~~~~~g~~~~~~~~~~il~~l~~  214 (215)
                      .       +++|+++.|.++++.+.||+.....| ++.|.+||||++|+|++.+.+......+++++|+.|++
T Consensus        81 ~~~~~~~~~~~f~llsD~~~~~~~~ygv~~~~~g-~~~R~tfvID~~G~I~~~~i~~~~~~~~~~EiL~~lka  152 (158)
T d1zyea1          81 PRKNGGLGHMNIALLSDLTKQISRDYGVLLEGPG-LALRGLFIIDPNGVIKHLSVNDLPVGRSVEETLRLVKA  152 (158)
T ss_dssp             CGGGTCCCSCSSEEEECTTSHHHHHTTCEETTTT-EECEEEEEECTTSBEEEEEEECTTCCCCHHHHHHHHHH
T ss_pred             hHhhccccccccccccccccHHHHHHHhccccCC-ccccEEEEECCCCEEEEEEEeCCCCCCCHHHHHHHHHH
Confidence            4       78999999999999999999865444 56679999999999999988877777889999999874

>d2cx4a1 c.47.1.10 (A:4-163) Bacterioferritin comigratory protein {Archaeon Aeropyrum pernix [TaxId: 56636]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Bacterioferritin comigratory protein
species: Archaeon Aeropyrum pernix [TaxId: 56636]

Probab=99.97  E-value=2e-31  Score=199.88  Aligned_cols=147  Identities=33%  Similarity=0.543  Sum_probs=130.3

Q ss_pred             CCCCCCCCCeEEeCCCCCeeecCCc--CCCcEEEEEEcCCCChhhHHHHHHHHHHHHHHHHcCcEEEEEeCCCHHHHHHH
Q 028030           68 VSKGQAPPSFTLKDQEGRNVSLSKF--KGKPVVVYFYPADETPGCTKQACAFRDSYEKFKKAGAEVIGISGDDSSSHKAF  145 (215)
Q Consensus        68 ~~~g~~~P~f~l~~~~g~~~~l~~~--~gk~~ll~f~~a~~C~~C~~~~~~l~~l~~~~~~~~v~vv~vs~d~~~~~~~~  145 (215)
                      +++|+++|+|++.|.+|+.++|+++  +||++||+||+++||++|..+++.++++++++++.++.+++|+.|+++.+++|
T Consensus         2 i~vG~~aPdF~L~~~~G~~~~Lsd~~~~gk~vvl~f~~~~~cp~C~~~~~~l~~~~~~~~~~~~~vv~is~d~~~~~~~~   81 (160)
T d2cx4a1           2 VELGEKAPDFTLPNQDFEPVNLYEVLKRGRPAVLIFFPAAFSPVCTKELCTFRDKMAQLEKANAEVLAISVDSPWCLKKF   81 (160)
T ss_dssp             CCTTSBCCCCEECCTTSCCEEHHHHHTTSSCEEEEECSCTTCHHHHHHHHHHHHTCTTTSTTCCEEEEEESSCHHHHHHH
T ss_pred             CcCCCCCcCeEeECCCCCEEehHHHhhCCCEEEEEecccccCCchhhhhhhhhcccccccccccccccccccchhhhhhh
Confidence            5799999999999999999999997  79999999999999999999999999999999999999999999999999999


Q ss_pred             HHHcCCCeEEEEcCChhHHHHhCCCccCCC---CCCccEEEEEcCCCcEEEEEeCCCC-CCccHHHHHHHHhc
Q 028030          146 AKKYRLPYTLLSDEGNKVRKEWGVPADFFG---SLPGRQTYILDKNGVVQLIYNNQFQ-PEKHIDETLKFLQS  214 (215)
Q Consensus       146 ~~~~~~~~~~~~d~~~~~~~~~g~~~~~~g---~~p~~~~~lid~~G~v~~~~~g~~~-~~~~~~~il~~l~~  214 (215)
                      .++++++|+++.|.+.++.++||+.....+   ..+.|++||||++|+|++.+.+... ...+++++++.+++
T Consensus        82 ~~~~~~~~~~l~D~~~~~~~~~gv~~~~~~~~~~~~~~~~flId~~G~I~~~~~~~~~~~~~~~~eil~~l~~  154 (160)
T d2cx4a1          82 KDENRLAFNLLSDYNREVIKLYNVYHEDLKGLKMVAKRAVFIVKPDGTVAYKWVTDNPLNEPDYDEVVREANK  154 (160)
T ss_dssp             HHHHTCSSEEEECTTSHHHHHTTCEEEEETTEEEEECCEEEEECTTSBEEEEEECSSTTCCCCHHHHHHHHHH
T ss_pred             cccceeeEEEeecCCcchHHHcCccccccccccccceeeEEEEcCCCEEEEEEEeCCCCCCCCHHHHHHHHHH
Confidence            999999999999999999999999753221   1234589999999999999876432 34578888888764

>d1st9a_ c.47.1.10 (A:) Thiol-disulfide oxidoreductase ResA {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Thiol-disulfide oxidoreductase ResA
species: Bacillus subtilis [TaxId: 1423]

Probab=99.97  E-value=1.7e-30  Score=190.08  Aligned_cols=134  Identities=25%  Similarity=0.541  Sum_probs=125.3

Q ss_pred             CCCCCCeEEeCCCCCeeecCCcCCCcEEEEEEcCCCChhhHHHHHHHHHHHHHHHHcCcEEEEEeCC-CHHHHHHHHHHc
Q 028030           71 GQAPPSFTLKDQEGRNVSLSKFKGKPVVVYFYPADETPGCTKQACAFRDSYEKFKKAGAEVIGISGD-DSSSHKAFAKKY  149 (215)
Q Consensus        71 g~~~P~f~l~~~~g~~~~l~~~~gk~~ll~f~~a~~C~~C~~~~~~l~~l~~~~~~~~v~vv~vs~d-~~~~~~~~~~~~  149 (215)
                      |+++|+|++.+.||+++++++++||++||+|| ++||++|..+++.++++++++.++++.+++|+.| +.+.+++|++++
T Consensus         2 G~~~P~f~l~~~~G~~~~l~~~~gk~~li~f~-~~~C~~C~~~~~~l~~~~~~~~~~~~~~v~i~~~~~~~~~~~~~~~~   80 (137)
T d1st9a_           2 GSDAPNFVLEDTNGKRIELSDLKGKGVFLNFW-GTWCEPCKKEFPYMANQYKHFKSQGVEIVAVNVGESKIAVHNFMKSY   80 (137)
T ss_dssp             CEECCCCEEECTTSCEEEGGGGTTSEEEEEEE-CTTCHHHHHHHHHHHHHHHHHGGGTEEEEEEEESCCHHHHHHHHHHT
T ss_pred             cCcCCCeEEECCCcCEEeHHHhCCCEEEEEEe-eccccceeecccccccccccccccccccccccccchhhhHHHHHHHc
Confidence            88999999999999999999999999999999 9999999999999999999999999999999974 678999999999


Q ss_pred             CCCeEEEEcCChhHHHHhCCCccCCCCCCccEEEEEcCCCcEEEEEeCCCCCCccHHHHHHHHh
Q 028030          150 RLPYTLLSDEGNKVRKEWGVPADFFGSLPGRQTYILDKNGVVQLIYNNQFQPEKHIDETLKFLQ  213 (215)
Q Consensus       150 ~~~~~~~~d~~~~~~~~~g~~~~~~g~~p~~~~~lid~~G~v~~~~~g~~~~~~~~~~il~~l~  213 (215)
                      +++|+++.|.++++.+.||+..     +|  ++||||++|+|++++.|... ++.++++++.|+
T Consensus        81 ~~~~~~~~d~~~~~~~~~~v~~-----~P--~~~liD~~G~i~~~~~G~~~-~~~~~~~l~~lk  136 (137)
T d1st9a_          81 GVNFPVVLDTDRQVLDAYDVSP-----LP--TTFLINPEGKVVKVVTGTMT-ESMIHDYMNLIK  136 (137)
T ss_dssp             TCCSCEEEETTSHHHHHTTCCS-----SC--EEEEECTTSEEEEEEESCCC-HHHHHHHHHHHC
T ss_pred             CCCccccccccchhhhhhhccc-----cc--eEEEECCCCEEEEEEECCCC-HHHHHHHHHhhC
Confidence            9999999999999999999987     88  99999999999999999654 566788888875

>d1xvwa1 c.47.1.10 (A:1-153) Putative peroxiredoxin Rv2238c/MT2298 {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Putative peroxiredoxin Rv2238c/MT2298
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.97  E-value=1.7e-30  Score=193.58  Aligned_cols=145  Identities=27%  Similarity=0.480  Sum_probs=123.8

Q ss_pred             CCCCCCCCCeEEeCCCCCeeecCCcCC-CcEEEEEEcCCCChhhHHHHHHHHHHHHHHHHcCcEEEEEeCCCHHHHHHHH
Q 028030           68 VSKGQAPPSFTLKDQEGRNVSLSKFKG-KPVVVYFYPADETPGCTKQACAFRDSYEKFKKAGAEVIGISGDDSSSHKAFA  146 (215)
Q Consensus        68 ~~~g~~~P~f~l~~~~g~~~~l~~~~g-k~~ll~f~~a~~C~~C~~~~~~l~~l~~~~~~~~v~vv~vs~d~~~~~~~~~  146 (215)
                      +++|+++|+|+++|.+|++++|++++| +++||+||+++||+.|..+++.|++++++++++|++|++|+.|+++.+++|.
T Consensus         2 l~vG~~aPdF~l~d~~G~~~slsd~~g~~~vvl~~~~~~~cp~C~~e~~~l~~~~~~~~~~~~~vi~vs~d~~~~~~~~~   81 (153)
T d1xvwa1           2 LNVGATAPDFTLRDQNQQLVTLRGYRGAKNVLLVFFPLAFTGICQGELDQLRDHLPEFENDDSAALAISVGPPPTHKIWA   81 (153)
T ss_dssp             CCTTSBCCCCEEECTTSCEEEGGGGTTTCEEEEEECSCTTSSHHHHHHHHHHHTGGGTSSSSEEEEEEESCCHHHHHHHH
T ss_pred             CCCcCCCcCeEEECCCCCEEeHHHHcCCCcEEEEecccccccchhhhhhhhhhhhhhhcccccccccccchhhhHHHHHh
Confidence            689999999999999999999999998 5677777779999999999999999999999999999999999999999999


Q ss_pred             HHcCCCeEEEEcC--ChhHHHHhCCCccCCCCCCccEEEEEcCCCcEEEEEeCCCCCC---ccHHHHHHHHh
Q 028030          147 KKYRLPYTLLSDE--GNKVRKEWGVPADFFGSLPGRQTYILDKNGVVQLIYNNQFQPE---KHIDETLKFLQ  213 (215)
Q Consensus       147 ~~~~~~~~~~~d~--~~~~~~~~g~~~~~~g~~p~~~~~lid~~G~v~~~~~g~~~~~---~~~~~il~~l~  213 (215)
                      ++++++|+++.|.  ++.+++.||+.....| ++.|++||||++|+|++.+.+.....   ..++++|+.|+
T Consensus        82 ~~~~~~~~~l~~~~~~~~~~~~ygv~~~~~g-~~~r~tfvID~~G~I~~~~~~~~~~~~~~~~~~~~L~aL~  152 (153)
T d1xvwa1          82 TQSGFTFPLLSDFWPHGAVSQAYGVFNEQAG-IANRGTFVVDRSGIIRFAEMKQPGEVRDQRLWTDALAALT  152 (153)
T ss_dssp             HHHTCCSCEEECTTTTTHHHHHTTCEETTTT-EECSEEEEECTTSBEEEEEECCTTCCCCHHHHHHHHHHTC
T ss_pred             hhhccceeEEecccccchhHHHhhhhhhccC-ceeeeEEEECCCCEEEEEEEeCCCcccCHHHHHHHHHhhc
Confidence            9999999998765  6789999999754444 56669999999999998876543322   44555555553

>d1qmva_ c.47.1.10 (A:) Thioredoxin peroxidase 2 (thioredoxin peroxidase B, 2-cys peroxiredoxin) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Thioredoxin peroxidase 2 (thioredoxin peroxidase B, 2-cys peroxiredoxin)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.97  E-value=1.8e-30  Score=200.71  Aligned_cols=148  Identities=33%  Similarity=0.554  Sum_probs=134.1

Q ss_pred             ccCCCCCCCCCeEEe---CCCCCeeecCCcCCCcEEEEEEcCCCChhhHHHHHHHHHHHHHHHHcCcEEEEEeCCCHHHH
Q 028030           66 AKVSKGQAPPSFTLK---DQEGRNVSLSKFKGKPVVVYFYPADETPGCTKQACAFRDSYEKFKKAGAEVIGISGDDSSSH  142 (215)
Q Consensus        66 ~~~~~g~~~P~f~l~---~~~g~~~~l~~~~gk~~ll~f~~a~~C~~C~~~~~~l~~l~~~~~~~~v~vv~vs~d~~~~~  142 (215)
                      ..+++|+++|+|+++   |.+|+.++|+|++||++||+|||.+||+.|..++..|++++++|++.|++|++||.|+.+.+
T Consensus         3 ~~~~VG~~AP~F~l~~~~d~~~~~v~L~d~~Gk~~vL~FyP~~~tp~C~~e~~~~~~~~~~f~~~g~~vigIS~D~~~~~   82 (197)
T d1qmva_           3 GNARIGKPAPDFKATAVVDGAFKEVKLSDYKGKYVVLFFYPLDFTFVCPTEIIAFSNRAEDFRKLGCEVLGVSVDSQFTH   82 (197)
T ss_dssp             TTBCTTSBCCCCEEEEEETTEEEEEEGGGGTTSEEEEEECSCTTSSHHHHHHHHHHHTHHHHHTTTEEEEEEESSCHHHH
T ss_pred             CCCcCCCcCCCCCCcceeCCCCcEEeHHHhCCCeEEEEEecccccccchhhhHHHHHHHHHhccCCcEEEEEecCCHHHH
Confidence            467899999999875   66788999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHc-------CCCeEEEEcCChhHHHHhCCCccCCCCCCccEEEEEcCCCcEEEEEeCCCCCCccHHHHHHHHhc
Q 028030          143 KAFAKKY-------RLPYTLLSDEGNKVRKEWGVPADFFGSLPGRQTYILDKNGVVQLIYNNQFQPEKHIDETLKFLQS  214 (215)
Q Consensus       143 ~~~~~~~-------~~~~~~~~d~~~~~~~~~g~~~~~~g~~p~~~~~lid~~G~v~~~~~g~~~~~~~~~~il~~l~~  214 (215)
                      ++|.++.       +++||++.|+++++++.||+.....| ++.|.+|+||++|+|++.+.+......+++++|+.|++
T Consensus        83 ~~~~~~~~~~~~~~~~~fpll~D~~~~va~~ygv~~~~~g-~~~R~tfiID~~g~Ir~~~~~~~~~~r~~~E~lr~l~a  160 (197)
T d1qmva_          83 LAWINTPRKEGGLGPLNIPLLADVTRRLSEDYGVLKTDEG-IAYRGLFIIDGKGVLRQITVNDLPVGRSVDEALRLVQA  160 (197)
T ss_dssp             HHHHTSCGGGTCCCSCSSCEEECTTCHHHHHTTCEETTTT-EECEEEEEECTTSBEEEEEEECTTBCCCHHHHHHHHHH
T ss_pred             HhhhcchhhhcCcCCCccceEeccchHHHHHhCCCcccCC-eeeEEEEEECCCCcEEEEEecCCCcccCHHHHHHHHHh
Confidence            9999864       68899999999999999999865444 55679999999999999988877778899999998763

>d1n8ja_ c.47.1.10 (A:) Alkyl hydroperoxide reductase AhpC {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Alkyl hydroperoxide reductase AhpC
species: Salmonella typhimurium [TaxId: 90371]

Probab=99.97  E-value=6.2e-30  Score=195.87  Aligned_cols=144  Identities=23%  Similarity=0.383  Sum_probs=130.5

Q ss_pred             CCCCCCCeEEeC-CCC--CeeecCCcCCCcEEEEEEcCCCChhhHHHHHHHHHHHHHHHHcCcEEEEEeCCCHHHHHHHH
Q 028030           70 KGQAPPSFTLKD-QEG--RNVSLSKFKGKPVVVYFYPADETPGCTKQACAFRDSYEKFKKAGAEVIGISGDDSSSHKAFA  146 (215)
Q Consensus        70 ~g~~~P~f~l~~-~~g--~~~~l~~~~gk~~ll~f~~a~~C~~C~~~~~~l~~l~~~~~~~~v~vv~vs~d~~~~~~~~~  146 (215)
                      +|+++|+|+++. .+|  ++++|++++||++||+|||.+||+.|..+++.|++.++++++.|+++++||.|+.+.+++|+
T Consensus         3 Ig~~aP~F~~~a~~~g~~~~vsLsd~kGk~vVL~FyP~~~tp~C~~e~~~f~~~~~~f~~~~~~v~gIS~Ds~~sh~~f~   82 (186)
T d1n8ja_           3 INTKIKPFKNQAFKNGEFIEVTEKDTEGRWSVFFFYPADFTFVSPTELGDVADHYEELQKLGVDVYSVSTDTHFTHKAWH   82 (186)
T ss_dssp             TTCBCCCCEEEEEETTEEEEEEHHHHTTSEEEEEECSCTTCSHHHHHHHHHHHHHHHHHHTTEEEEEEESSCHHHHHHHH
T ss_pred             CCCcCCCCEeeeeeCCeeEEEeHHHhCCCeEEEEEEeccCCCccHHHHHHHHHhhhhcccccEEEEeccccCHHHHHHHh
Confidence            699999999876 344  57899999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHcC----CCeEEEEcCChhHHHHhCCCccCCCCCCccEEEEEcCCCcEEEEEeCCCCCCccHHHHHHHHhc
Q 028030          147 KKYR----LPYTLLSDEGNKVRKEWGVPADFFGSLPGRQTYILDKNGVVQLIYNNQFQPEKHIDETLKFLQS  214 (215)
Q Consensus       147 ~~~~----~~~~~~~d~~~~~~~~~g~~~~~~g~~p~~~~~lid~~G~v~~~~~g~~~~~~~~~~il~~l~~  214 (215)
                      +.++    ++|+++.|+++++.+.||+.....| ++.|.+||||++|+|++.+.+......+++++|+.|++
T Consensus        83 ~~~~~~~~~~fpllsD~~~~v~~~yGv~~~~~g-~~~r~tfiID~~G~Ir~~~v~~~~~~r~~~eiL~~lka  153 (186)
T d1n8ja_          83 SSSETIAKIKYAMIGDPTGALTRNFDNMREDEG-LADRATFVVDPQGIIQAIEVTAEGIGRDASDLLRKIKA  153 (186)
T ss_dssp             HHCTTGGGCCSEEEECTTSHHHHHTTCEETTTT-EECEEEEEECTTSBEEEEEEECTTBCCCHHHHHHHHHH
T ss_pred             ccccccccccccccccHHHHHHHHhCCCcccCC-cceeeEEEECchheEEEEeecCCCcccCHHHHHHHHHH
Confidence            9875    8999999999999999999765444 56679999999999999988877777899999998874

>d1zofa1 c.47.1.10 (A:1-170) Thioredoxin reductase TsaA {Helicobacter pylori [TaxId: 210]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Thioredoxin reductase TsaA
species: Helicobacter pylori [TaxId: 210]

Probab=99.96  E-value=3.8e-30  Score=194.94  Aligned_cols=144  Identities=25%  Similarity=0.435  Sum_probs=128.2

Q ss_pred             CCCCCCCCeEEeCCCC-----CeeecCCcCCC-cEEEEEEcCCCChhhHHHHHHHHHHHHHHHHcCcEEEEEeCCCHHHH
Q 028030           69 SKGQAPPSFTLKDQEG-----RNVSLSKFKGK-PVVVYFYPADETPGCTKQACAFRDSYEKFKKAGAEVIGISGDDSSSH  142 (215)
Q Consensus        69 ~~g~~~P~f~l~~~~g-----~~~~l~~~~gk-~~ll~f~~a~~C~~C~~~~~~l~~l~~~~~~~~v~vv~vs~d~~~~~  142 (215)
                      -+|+++|||++++.+|     +.++|++++|| ++||+|||++||+.|..+++.|++.++++++.|++|++|+.|+.+.+
T Consensus         2 lVG~~APdF~l~~~~g~~~~~~~~~Lsd~~gk~~vvl~FyP~~~tp~C~~e~~~~~~~~~~f~~~g~~Vvgis~d~~~~~   81 (170)
T d1zofa1           2 VVTKLAPDFKAPAVLGNNEVDEHFELSKNLGKNGVILFFWPKDFTFVCPTEIIAFDKRVKDFHEKGFNVIGVSIDSEQVH   81 (170)
T ss_dssp             CTTSBCCCCEEEEECTTSCEEEEEETTTSCCSSEEEEEECSCTTCSSCCTHHHHHHHTHHHHHHTTEEEEEEESSCHHHH
T ss_pred             CCCCcCCCcCcccccCCCccceEEEeHHHcCCCEEEEEEEccccCCcCHHHHHHHHHhHHhhccCCeeEecccccchhhH
Confidence            4799999999999887     47999999986 79999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHc-------CCCeEEEEcCChhHHHHhCCCccCCCCCCccEEEEEcCCCcEEEEEeCCCCCCccHHHHHHHHhc
Q 028030          143 KAFAKKY-------RLPYTLLSDEGNKVRKEWGVPADFFGSLPGRQTYILDKNGVVQLIYNNQFQPEKHIDETLKFLQS  214 (215)
Q Consensus       143 ~~~~~~~-------~~~~~~~~d~~~~~~~~~g~~~~~~g~~p~~~~~lid~~G~v~~~~~g~~~~~~~~~~il~~l~~  214 (215)
                      ++|.+.+       +++|+++.|.+.++.++||+....  .++.|.+||||++|+|++.+.+......+++++|++|++
T Consensus        82 ~~~~~~~~~~~~~~~~~~~~l~D~~~~v~~~ygv~~~~--~~~~r~tfvID~~G~I~~~~~~~~~~~~~~~eiL~~l~a  158 (170)
T d1zofa1          82 FAWKNTPVEKGGIGQVSFPMVADITKSISRDYDVLFEE--AIALRGAFLIDKNMKVRHAVINDLPLGRNADEMLRMVDA  158 (170)
T ss_dssp             HHHHTSCGGGTCCCCCSSCEEECTTSHHHHHTTCEETT--TEECEEEEEEETTTEEEEEEEESSSCCCHHHHHHHHHHH
T ss_pred             HHHHhhhhhcccccCcccccccccccHHHHHcCCCccc--cceeEEEEEEcCCCeEEEEEEeCCCCCCCHHHHHHHHHH
Confidence            9999875       678999999999999999996532  255669999999999999887766666788999988763

>d2cvba1 c.47.1.10 (A:2-188) Probable thiol-disulfide isomerase/thioredoxin TTHA0593 {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Probable thiol-disulfide isomerase/thioredoxin TTHA0593
species: Thermus thermophilus [TaxId: 274]

Probab=99.96  E-value=1.6e-29  Score=194.25  Aligned_cols=121  Identities=19%  Similarity=0.313  Sum_probs=112.8

Q ss_pred             ccCCCCCCCCCeEEeCCCCCeeecCCcCCCcEEEEEEcCCCChhhHHHHHHHHHHHHHHHHcCcEEEEEeC--------C
Q 028030           66 AKVSKGQAPPSFTLKDQEGRNVSLSKFKGKPVVVYFYPADETPGCTKQACAFRDSYEKFKKAGAEVIGISG--------D  137 (215)
Q Consensus        66 ~~~~~g~~~P~f~l~~~~g~~~~l~~~~gk~~ll~f~~a~~C~~C~~~~~~l~~l~~~~~~~~v~vv~vs~--------d  137 (215)
                      ..+.+|+++|+|+++|.+|+.++|++++||++||+|| ++||++|+.++|.|.+++++|++ ++.+++|+.        +
T Consensus         4 p~l~vG~~aPdF~l~d~~G~~~~Lsd~kGk~vvl~Fw-atwCp~C~~~~p~l~~l~~~y~~-~v~~v~i~snd~~~~~~~   81 (187)
T d2cvba1           4 PELPLESPLIDAELPDPRGGRYRLSQFHEPLLAVVFM-CNHCPYVKGSIGELVALAERYRG-KVAFVGINANDYEKYPED   81 (187)
T ss_dssp             CCCCTTCBCCCCEEECTTSCEEEGGGCCSSEEEEEEE-CSSCHHHHTTHHHHHHHHHHTTT-TEEEEEEECCCTTTCGGG
T ss_pred             CCCCCCCccCccEeecCCCCEEEHHHhCCCeEEEEEe-CCCCccchhhhhhhhhhhhhccc-cceeeeeecccccccccc
Confidence            5678999999999999999999999999999999999 99999999999999999999986 599999864        2


Q ss_pred             CHHHHHHHHHHcCCCeEEEEcCChhHHHHhCCCccCCCCCCccEEEEEcCCCcEEEEE
Q 028030          138 DSSSHKAFAKKYRLPYTLLSDEGNKVRKEWGVPADFFGSLPGRQTYILDKNGVVQLIY  195 (215)
Q Consensus       138 ~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~g~~~~~~g~~p~~~~~lid~~G~v~~~~  195 (215)
                      +.+.++++.++++++|+++.|+++++++.|++..     +|  ++||||++|+|+++.
T Consensus        82 ~~e~~~~~~~~~~~~~p~l~D~~~~~~~~~~v~~-----~P--~~~liD~~G~i~y~G  132 (187)
T d2cvba1          82 APEKMAAFAEEHGIFFPYLLDETQEVAKAYRALR-----TP--EVFLFDERRLLRYHG  132 (187)
T ss_dssp             SHHHHHHHHHHHTCCSCEEECSSSHHHHHTTCCE-----ES--EEEEECTTCBEEEEE
T ss_pred             chHHHHHHHHHhCCcceeeechhhhhcccccccc-----ee--eEEEEcCCCeEEEEe
Confidence            4588999999999999999999999999999998     88  999999999999764

>d2a4va1 c.47.1.10 (A:59-214) Peroxiredoxin dot5 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Peroxiredoxin dot5
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.96  E-value=1.2e-29  Score=189.70  Aligned_cols=146  Identities=28%  Similarity=0.461  Sum_probs=124.4

Q ss_pred             ccCCCCCCCCCeEEeCCCCCeeecCCc--CCCcEEEEEEcCCCChhhHHHHHHHHHHHHHHHHcCcEEEEEeCCCHHHHH
Q 028030           66 AKVSKGQAPPSFTLKDQEGRNVSLSKF--KGKPVVVYFYPADETPGCTKQACAFRDSYEKFKKAGAEVIGISGDDSSSHK  143 (215)
Q Consensus        66 ~~~~~g~~~P~f~l~~~~g~~~~l~~~--~gk~~ll~f~~a~~C~~C~~~~~~l~~l~~~~~~~~v~vv~vs~d~~~~~~  143 (215)
                      ..+++|+++|+|+++|.+|+.++|+++  +|+++|++||+++||+.|..+++.|++++++|++ ++.+++|+.|+.+.++
T Consensus         3 ~~L~vG~~aP~f~L~~~~g~~~~l~~~~~k~~~vvlff~p~~~cp~C~~~~~~~~~~~~~~~~-~~~~~~is~d~~~~~~   81 (156)
T d2a4va1           3 NELEIGDPIPDLSLLNEDNDSISLKKITENNRVVVFFVYPRASTPGSTRQASGFRDNYQELKE-YAAVFGLSADSVTSQK   81 (156)
T ss_dssp             TCCCTTCBCCSCEEECTTSCEEEHHHHHHHCSEEEEEECSSSSSHHHHHHHHHHHHHHHHHTT-TCEEEEEESCCHHHHH
T ss_pred             ccCCCCCCCCCeEEECCCCCEEeeHHHcCCccEEEEEecccccCcchhhhhHHHHHHHHHHhh-ccceeeeccchhhhHH
Confidence            568899999999999999999999998  5678888889999999999999999999999975 5789999999999999


Q ss_pred             HHHHHcCCCeEEEEcCChhHHHHhCCCccCCCCCCccEEEEEcCCCcEEEEEeCCCC---CCccHHHHHHHHhc
Q 028030          144 AFAKKYRLPYTLLSDEGNKVRKEWGVPADFFGSLPGRQTYILDKNGVVQLIYNNQFQ---PEKHIDETLKFLQS  214 (215)
Q Consensus       144 ~~~~~~~~~~~~~~d~~~~~~~~~g~~~~~~g~~p~~~~~lid~~G~v~~~~~g~~~---~~~~~~~il~~l~~  214 (215)
                      +|.++++++|+++.|++++++++||+.....+..+  +.++|+.||+|++++.+...   .+..++++++.|++
T Consensus        82 ~f~~~~~l~f~~L~D~~~~v~~~ygv~~~~~~~~~--r~~~i~~dg~i~~~~~~~~~~~~~~~~~~evl~~lk~  153 (156)
T d2a4va1          82 KFQSKQNLPYHLLSDPKREFIGLLGAKKTPLSGSI--RSHFIFVDGKLKFKRVKISPEVSVNDAKKEVLEVAEK  153 (156)
T ss_dssp             HHHHHHTCSSEEEECTTCHHHHHHTCBSSSSSCBC--CEEEEEETTEEEEEEESCCHHHHHHHHHHHHHHHHHH
T ss_pred             hhhcccCccceeccchHHHHHHHcCCCccccCCee--EEEEEEECCeEEEEEEEeCCCCCcchHHHHHHHHHHH
Confidence            99999999999999999999999999865444444  55666689999999876432   23345677776653

>d2zcta1 c.47.1.10 (A:6-242) Peroxiredoxin {Aeropyrum pernix [TaxId: 56636]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Peroxiredoxin
species: Aeropyrum pernix [TaxId: 56636]

Probab=99.96  E-value=3.4e-29  Score=198.05  Aligned_cols=145  Identities=26%  Similarity=0.493  Sum_probs=127.5

Q ss_pred             CCCCCCCCeEEeCCCCCeeecCCc---CCCcEEEEEEcCCCChhhHHHHHHHHHHHHHHHHcCcEEEEEeCCCHHHHHHH
Q 028030           69 SKGQAPPSFTLKDQEGRNVSLSKF---KGKPVVVYFYPADETPGCTKQACAFRDSYEKFKKAGAEVIGISGDDSSSHKAF  145 (215)
Q Consensus        69 ~~g~~~P~f~l~~~~g~~~~l~~~---~gk~~ll~f~~a~~C~~C~~~~~~l~~l~~~~~~~~v~vv~vs~d~~~~~~~~  145 (215)
                      .+|+++|+|++.+.+|+ +.+.++   +||++||+||+++||+.|..+++.|++++++++++|+++|+||.|+.+.+++|
T Consensus         2 lIGd~aPdF~l~t~~G~-i~~~d~~~~kGk~vVLff~P~dftpvCttEl~~~~~~~~ef~~~g~~vigiS~Ds~~sh~~w   80 (237)
T d2zcta1           2 LIGERFPEMEVTTDHGV-IKLPDHYVSQGKWFVLFSHPADFTPVCTTEFVSFARRYEDFQRLGVDLIGLSVDSVFSHIKW   80 (237)
T ss_dssp             CTTSBCCCEEEEETTEE-EEETHHHHTTTCEEEEEEESCSSCHHHHHHHHHHHHTHHHHHHTTEEEEEEESSCHHHHHHH
T ss_pred             CCCCCCCCeEEEcCCCC-EEechHhhcCCCEEEEEEECCCCCccCHHHHHHHHhhhhhhccCCcceeeccCCcHHHHHHH
Confidence            48999999999999995 777765   79999999999999999999999999999999999999999999999988888


Q ss_pred             HHH------cCCCeEEEEcCChhHHHHhCCCccCCCCCCccEEEEEcCCCcEEEEEeCCCCCCccHHHHHHHHhc
Q 028030          146 AKK------YRLPYTLLSDEGNKVRKEWGVPADFFGSLPGRQTYILDKNGVVQLIYNNQFQPEKHIDETLKFLQS  214 (215)
Q Consensus       146 ~~~------~~~~~~~~~d~~~~~~~~~g~~~~~~g~~p~~~~~lid~~G~v~~~~~g~~~~~~~~~~il~~l~~  214 (215)
                      .+.      .+++|+++.|.+++++++||+.....+..+.|.+||||++|+|++.+.+......+++++|+.|++
T Consensus        81 ~~~~~~~~~~~l~fpllsD~~~~vak~yGv~~~~~~~~~~RatFIIDpdG~Ir~~~~~~~~~gR~~dEiLr~l~a  155 (237)
T d2zcta1          81 KEWIERHIGVRIPFPIIADPQGTVARRLGLLHAESATHTVRGVFIVDARGVIRTMLYYPMELGRLVDEILRIVKA  155 (237)
T ss_dssp             HHHHHHHHCCCCCSCEEECGGGHHHHHTTCC----CCTTCCEEEEECTTSBEEEEEECCTTBCCCHHHHHHHHHH
T ss_pred             hhhhhhhcccccccccccCcchHHHHHcCCccccccccceeeeEEECCCCEEEEEEEeCCCCCCCHHHHHHHHHH
Confidence            863      568899999999999999999754444455669999999999999988877778899999999874

>d1lu4a_ c.47.1.10 (A:) Soluble secreted antigen MPT53 {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Soluble secreted antigen MPT53
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.96  E-value=4.8e-29  Score=181.71  Aligned_cols=131  Identities=21%  Similarity=0.359  Sum_probs=114.3

Q ss_pred             CCCCCCeEEeCCCCCeeecCCcCCCcEEEEEEcCCCChhhHHHHHHHHHHHHHHHHcCcEEEEEeCC-CHHHHHHHHHHc
Q 028030           71 GQAPPSFTLKDQEGRNVSLSKFKGKPVVVYFYPADETPGCTKQACAFRDSYEKFKKAGAEVIGISGD-DSSSHKAFAKKY  149 (215)
Q Consensus        71 g~~~P~f~l~~~~g~~~~l~~~~gk~~ll~f~~a~~C~~C~~~~~~l~~l~~~~~~~~v~vv~vs~d-~~~~~~~~~~~~  149 (215)
                      |+..++|++++.+|+++++++++||++||+|| ++||++|+.++|.|++++++++  ++.+++|+.+ +.+.+++|++++
T Consensus         1 ~d~~~~f~~~~~~G~~~~l~~~~Gk~vll~F~-a~wC~~C~~~~p~l~~~~~~~~--~v~~v~v~~~~~~~~~~~~~~~~   77 (134)
T d1lu4a_           1 ADERLQFTATTLSGAPFDGASLQGKPAVLWFW-TPWCPFCNAEAPSLSQVAAANP--AVTFVGIATRADVGAMQSFVSKY   77 (134)
T ss_dssp             CGGGGCCEEEBTTSCEEEGGGGTTSCEEEEEE-CTTCHHHHHHHHHHHHHHHHCT--TSEEEEEECSSCHHHHHHHHHHH
T ss_pred             CCCCCcceeECCCCCEEcHHHhCCCEEEEEEe-ecccCCceecchhHHHHhhhhc--cccccccccccchhhhhhhhhhh
Confidence            67889999999999999999999999999999 9999999999999999988764  7999999975 678999999999


Q ss_pred             CCCeEEEEcCChhHHHHhCCCccCCCCCCccEEEEEcCCCcEEEEEeCCCCCCccHHHHHHHHh
Q 028030          150 RLPYTLLSDEGNKVRKEWGVPADFFGSLPGRQTYILDKNGVVQLIYNNQFQPEKHIDETLKFLQ  213 (215)
Q Consensus       150 ~~~~~~~~d~~~~~~~~~g~~~~~~g~~p~~~~~lid~~G~v~~~~~g~~~~~~~~~~il~~l~  213 (215)
                      +++|+++.|+++.+.+.||+..     +|  +++|||++|+|++.....  .....+++.+.|+
T Consensus        78 ~~~~p~~~d~~~~~~~~~~v~~-----~P--~~~lid~~G~i~~v~~~~--g~~~~~~l~~~l~  132 (134)
T d1lu4a_          78 NLNFTNLNDADGVIWARYNVPW-----QP--AFVFYRADGTSTFVNNPT--AAMSQDELSGRVA  132 (134)
T ss_dssp             TCCSEEEECTTSHHHHHTTCCS-----SS--EEEEECTTSCEEEECCSS--SCCCHHHHHHHHH
T ss_pred             ccccceeeCchHHHHHHcCCCc-----CC--EEEEEeCCCeEEEEeccC--CCCCHHHHHHHHH
Confidence            9999999999999999999987     89  999999999998764332  1233455555554

>d1prxa_ c.47.1.10 (A:) 1-Cys peroxiredoxin {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: 1-Cys peroxiredoxin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.96  E-value=4.6e-29  Score=195.69  Aligned_cols=146  Identities=21%  Similarity=0.362  Sum_probs=131.6

Q ss_pred             CCCCCCCCCeEEeCCCCCeeecCCcCC-CcEEEEEEcCCCChhhHHHHHHHHHHHHHHHHcCcEEEEEeCCCHHHHHHHH
Q 028030           68 VSKGQAPPSFTLKDQEGRNVSLSKFKG-KPVVVYFYPADETPGCTKQACAFRDSYEKFKKAGAEVIGISGDDSSSHKAFA  146 (215)
Q Consensus        68 ~~~g~~~P~f~l~~~~g~~~~l~~~~g-k~~ll~f~~a~~C~~C~~~~~~l~~l~~~~~~~~v~vv~vs~d~~~~~~~~~  146 (215)
                      |.+|+++|+|++.+.+|+ ++|++++| |++||+|||++||+.|..++..|++.+++++++|+++++||.|+.+.+.+|.
T Consensus         1 L~VGd~APdF~l~~~~G~-v~Lsd~~g~k~vVLfFyP~dftpvC~~El~~~~~~~~~f~~~g~~v~giS~Ds~~sh~~~~   79 (220)
T d1prxa_           1 LLLGDVAPNFEANTTVGR-IRFHDFLGDSWGILFSHPRDFTPVCTTELGRAAKLAPEFAKRNVKLIALSIDSVEDHLAWS   79 (220)
T ss_dssp             CCTTCBCCCCEEEETTEE-EEHHHHHTTSEEEEEEESCSSCHHHHHHHHHHHHHHHHHHTTTEEEEEEESSCHHHHHHHH
T ss_pred             CCCCCCCCCcEeecCCCC-EEeHHHcCCCeEEEEEECCCCCCcchhhHHHHHHHHHHhhcccceeeccccccccchhhhh
Confidence            468999999999999996 99999976 8999999999999999999999999999999999999999999999999988


Q ss_pred             HH----------cCCCeEEEEcCChhHHHHhCCCccCCC-----CCCccEEEEEcCCCcEEEEEeCCCCCCccHHHHHHH
Q 028030          147 KK----------YRLPYTLLSDEGNKVRKEWGVPADFFG-----SLPGRQTYILDKNGVVQLIYNNQFQPEKHIDETLKF  211 (215)
Q Consensus       147 ~~----------~~~~~~~~~d~~~~~~~~~g~~~~~~g-----~~p~~~~~lid~~G~v~~~~~g~~~~~~~~~~il~~  211 (215)
                      +.          .+++||++.|.+++++++||+.....+     .++.|.+||||++|+|++.+........+++++|+.
T Consensus        80 ~~~~~~~~~~~~~~l~fpllsD~~~~va~~ygv~~~~~~~~~~~~~~~RatFIID~~g~Ir~~~~~~~~~gR~~dEiLr~  159 (220)
T d1prxa_          80 KDINAYNSEEPTEKLPFPIIDDRNRELAILLGMLDPAEKDEKGMPVTARVVFVFGPDKKLKLSILYPATTGRNFDEILRV  159 (220)
T ss_dssp             HHHHHHTTSCCCSCCSSCEEECTTCHHHHHTTSSCSCTTCSSSCCTTCCEEEEECTTSBEEEEEECCTTBCCCHHHHHHH
T ss_pred             hhhhhccccccccCcccccccCcccHHHHHhCCccccccccccceeeeEEEEEEcCccceeEEEEecCCcccchHHHHHH
Confidence            75          358899999999999999999854322     246679999999999999999888888899999998


Q ss_pred             Hhc
Q 028030          212 LQS  214 (215)
Q Consensus       212 l~~  214 (215)
                      |++
T Consensus       160 l~a  162 (220)
T d1prxa_         160 VIS  162 (220)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            874

>d1psqa_ c.47.1.10 (A:) Probable thiol peroxidase PsaD {Streptococcus pneumoniae [TaxId: 1313]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Probable thiol peroxidase PsaD
species: Streptococcus pneumoniae [TaxId: 1313]

Probab=99.96  E-value=2.4e-28  Score=183.80  Aligned_cols=146  Identities=18%  Similarity=0.323  Sum_probs=126.2

Q ss_pred             ccCCCCCCCCCeEEeCCCCCeeecCCcCCCcEEEEEEcCCCChhhHHHHHHHHHHHHHHHHcCcEEEEEeCCCHHHHHHH
Q 028030           66 AKVSKGQAPPSFTLKDQEGRNVSLSKFKGKPVVVYFYPADETPGCTKQACAFRDSYEKFKKAGAEVIGISGDDSSSHKAF  145 (215)
Q Consensus        66 ~~~~~g~~~P~f~l~~~~g~~~~l~~~~gk~~ll~f~~a~~C~~C~~~~~~l~~l~~~~~~~~v~vv~vs~d~~~~~~~~  145 (215)
                      ..+++|+++|+|++.+.+|++++|++++||++||.||++.||+.|..+++.|++.+.+++  ++.+++|+.|+++..++|
T Consensus        14 ~~l~vG~~aPdF~L~~~~g~~vsLsd~~gk~~vl~f~~~~~~p~C~~~~~~l~~~~~~~~--~~~vv~Is~d~~~~~~~~   91 (163)
T d1psqa_          14 KQLQVGDKALDFSLTTTDLSKKSLADFDGKKKVLSVVPSIDTGICSTQTRRFNEELAGLD--NTVVLTVSMDLPFAQKRW   91 (163)
T ss_dssp             CCCCTTSBCCCCEEECTTSCEEEGGGGTTSEEEEEECSCTTSHHHHHHHHHHHHHTTTCT--TEEEEEEESSCHHHHHHH
T ss_pred             CCCCCCCCCCCeEEECCCCCEEehHHhCCcEEEEEeccccccccchhhHHHHHHHHHhhc--ccceEEEEeccHHHHHHH
Confidence            467899999999999999999999999999999999999999999999999999888775  699999999999999999


Q ss_pred             HHHcCCCe-EEEEc-CChhHHHHhCCCccCCCCCCccEEEEEcCCCcEEEEEeCC-CCCCccHHHHHHHHhc
Q 028030          146 AKKYRLPY-TLLSD-EGNKVRKEWGVPADFFGSLPGRQTYILDKNGVVQLIYNNQ-FQPEKHIDETLKFLQS  214 (215)
Q Consensus       146 ~~~~~~~~-~~~~d-~~~~~~~~~g~~~~~~g~~p~~~~~lid~~G~v~~~~~g~-~~~~~~~~~il~~l~~  214 (215)
                      .+.++..+ .++.| .+..+.+.||+....++ ++.|++||||++|+|++.+... ...+.++++++++|++
T Consensus        92 ~~~~~~~~~~~~~~~~~~~~~~~ygv~~~~~~-~~~Ra~fvID~~G~I~y~~~~~~~~~~~~~~~il~alk~  162 (163)
T d1psqa_          92 CGAEGLDNAIMLSDYFDHSFGRDYALLINEWH-LLARAVFVLDTDNTIRYVEYVDNINSEPNFEAAIAAAKA  162 (163)
T ss_dssp             HHHHTCTTSEEEECTTTCHHHHHHTCBCTTTC-SBCCEEEEECTTCBEEEEEECSBTTSCCCHHHHHHHHHH
T ss_pred             HHHcCCcceeeeccccchhHHHhheeeccccc-ceeEEEEEECCCCEEEEEEEcCCCCCCCCHHHHHHHHhc
Confidence            99988774 44444 57789999999866555 4567899999999999987553 4556688999999874

>d1qxha_ c.47.1.10 (A:) Thiol peroxidase Tpx {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Thiol peroxidase Tpx
species: Escherichia coli [TaxId: 562]

Probab=99.96  E-value=3.8e-29  Score=188.35  Aligned_cols=142  Identities=20%  Similarity=0.268  Sum_probs=121.9

Q ss_pred             cCCCCCCCCCeEEeCCCCCeeecCCcCCCcEEEEEEcCCCChhhHHHHHHHHHHHHHHHHcCcEEEEEeCCCHHHHHHHH
Q 028030           67 KVSKGQAPPSFTLKDQEGRNVSLSKFKGKPVVVYFYPADETPGCTKQACAFRDSYEKFKKAGAEVIGISGDDSSSHKAFA  146 (215)
Q Consensus        67 ~~~~g~~~P~f~l~~~~g~~~~l~~~~gk~~ll~f~~a~~C~~C~~~~~~l~~l~~~~~~~~v~vv~vs~d~~~~~~~~~  146 (215)
                      .+++|+++|+|++.+.+|+.++|++++||++||+||++.||++|..+++.|++++.+++  ++++++|+.|+++.+++|.
T Consensus        17 ~~~vG~~APdF~L~~~~g~~vsLsd~~GK~vvl~f~~~~~~p~C~~~~~~l~~~~~~~~--~~~vv~Is~d~~~~~~~~~   94 (164)
T d1qxha_          17 IPQAGSKAQTFTLVAKDLSDVTLGQFAGKRKVLNIFPSIDTGVCAASVRKFNQLATEID--NTVVLCISADLPFAQSRFC   94 (164)
T ss_dssp             CCCTTSBCCCCEEECTTSCEEEGGGGTTSEEEEEECSCSCSSCCCHHHHHHHHHHHTST--TEEEEEEESSCHHHHTTCC
T ss_pred             cCCCCCCCCCeEEECCCCCEEeHHHhCCCeEEEEEecchhcccchHHHHHHHHHHHhhc--cceeeeEEcCCHHHHHHHH
Confidence            35899999999999999999999999999999999999999999999999999987664  7999999999999999999


Q ss_pred             HHcCCCeEEEE--cCChhHHHHhCCCccCCC--CCCccEEEEEcCCCcEEEEEeCC-CCCCccHHHHHH
Q 028030          147 KKYRLPYTLLS--DEGNKVRKEWGVPADFFG--SLPGRQTYILDKNGVVQLIYNNQ-FQPEKHIDETLK  210 (215)
Q Consensus       147 ~~~~~~~~~~~--d~~~~~~~~~g~~~~~~g--~~p~~~~~lid~~G~v~~~~~g~-~~~~~~~~~il~  210 (215)
                      ++++++++++.  |.++++.+.||+.....+  .++.|++||||++|+|++.+... ...+.+.+++|+
T Consensus        95 ~~~~~~~~~~~~~d~~~~~~~~ygv~~~~~~~~g~~~ra~fvID~~G~I~y~~~~~~~~~~pd~d~~l~  163 (164)
T d1qxha_          95 GAEGLNNVITLSTFRNAEFLQAYGVAIADGPLKGLAARAVVVIDENDNVIFSQLVDEITTEPDYEAALA  163 (164)
T ss_dssp             SSTTCTTEEEEECTTCHHHHHHTTCBBCSSTTTTSBCCEEEEECTTSBEEEEEECSBTTSCCCHHHHTC
T ss_pred             HHhCCCcceeeccccchhhHHhcCeEeecCcccCcccCEEEEEcCCCEEEEEEEcCCCCCCCCHHHhhc
Confidence            99999988764  568899999998643221  24566999999999999987653 455677777653

>d1xvqa_ c.47.1.10 (A:) Thiol peroxidase Tpx {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Thiol peroxidase Tpx
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.96  E-value=3e-28  Score=183.73  Aligned_cols=145  Identities=22%  Similarity=0.331  Sum_probs=118.1

Q ss_pred             cCCCCCCCCCeEEeCCCCCeeecCCcCCCcEEEEEEcCCCChhhHHHHHHHHHHHHHHHHcCcEEEEEeCCCHHHHHHHH
Q 028030           67 KVSKGQAPPSFTLKDQEGRNVSLSKFKGKPVVVYFYPADETPGCTKQACAFRDSYEKFKKAGAEVIGISGDDSSSHKAFA  146 (215)
Q Consensus        67 ~~~~g~~~P~f~l~~~~g~~~~l~~~~gk~~ll~f~~a~~C~~C~~~~~~l~~l~~~~~~~~v~vv~vs~d~~~~~~~~~  146 (215)
                      .+++|+++|+|++.+.+|+.++|++++||++||+||++.||+.|..+++.|++   ++.+.|++|++|+.|+++.+++|.
T Consensus        16 ~p~iG~~aP~F~L~~~~g~~v~L~d~~Gk~vvl~f~~~~~~p~C~~e~~~l~~---~~~~~g~~vv~Is~d~~~~~~~~~   92 (166)
T d1xvqa_          16 LPAVGSPAPAFTLTGGDLGVISSDQFRGKSVLLNIFPSVDTPVCATSVRTFDE---RAAASGATVLCVSKDLPFAQKRFC   92 (166)
T ss_dssp             CCCTTSBCCCCEEECTTSCEEEGGGGTTSCEEEEECSCCCSSCCCHHHHHHHH---HHHHTTCEEEEEESSCHHHHTTCC
T ss_pred             CCCCcCCCCCeEEECCCCCEEehHHhCCcEEEEEeeecccccccHHHHHHHhh---hcccccccccccccchHHHHHHHH
Confidence            35899999999999999999999999999999999999999999999887754   566678999999999999999999


Q ss_pred             HHcCCCeEEE-EcCChhHHHHhCCCccCCC--CCCccEEEEEcCCCcEEEEEeC-CCCCCccHHHHHHHHhc
Q 028030          147 KKYRLPYTLL-SDEGNKVRKEWGVPADFFG--SLPGRQTYILDKNGVVQLIYNN-QFQPEKHIDETLKFLQS  214 (215)
Q Consensus       147 ~~~~~~~~~~-~d~~~~~~~~~g~~~~~~g--~~p~~~~~lid~~G~v~~~~~g-~~~~~~~~~~il~~l~~  214 (215)
                      +.+++.+..+ .|....+.+.||+.....+  .++.|++||||++|+|++.+.. ....+.++++++++|+.
T Consensus        93 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~g~~~ra~fvID~~G~I~y~~~~~~~~~~~~~d~il~aL~a  164 (166)
T d1xvqa_          93 GAEGTENVMPASAFRDSFGEDYGVTIADGPMAGLLARAIVVIGADGNVAYTELVPEIAQEPNYEAALAALGA  164 (166)
T ss_dssp             ------CEEEEECTTSSHHHHTTCBBCSSTTTTSBCSEEEEECTTSBEEEEEECSBTTCCCCHHHHHHHHHH
T ss_pred             HHhCCcccccccchhHHHHHHhCeeeccCcccCceeeEEEEEeCCCEEEEEEEcCCCCCCCCHHHHHHHHHh
Confidence            9999988765 5667888999998753321  2455689999999999998754 45566789999999875

>d1jfua_ c.47.1.10 (A:) Membrane-anchored thioredoxin-like protein TlpA, soluble domain {Bradyrhizobium japonicum [TaxId: 375]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Membrane-anchored thioredoxin-like protein TlpA, soluble domain
species: Bradyrhizobium japonicum [TaxId: 375]

Probab=99.95  E-value=4.7e-28  Score=184.20  Aligned_cols=140  Identities=24%  Similarity=0.375  Sum_probs=119.5

Q ss_pred             CCCCCCCCCeEEeCCCCCeeecCCcCCCcEEEEEEcCCCChhhHHHHHHHHHHHHHHHHcCcEEEEEeCC--CHHHHHHH
Q 028030           68 VSKGQAPPSFTLKDQEGRNVSLSKFKGKPVVVYFYPADETPGCTKQACAFRDSYEKFKKAGAEVIGISGD--DSSSHKAF  145 (215)
Q Consensus        68 ~~~g~~~P~f~l~~~~g~~~~l~~~~gk~~ll~f~~a~~C~~C~~~~~~l~~l~~~~~~~~v~vv~vs~d--~~~~~~~~  145 (215)
                      ...+.++|+|+++|.+|+.++|++++||++||+|| ++||++|+.+++.++++++++.+.++.|++|+.|  +++.+++|
T Consensus        30 ~~~~~~~Pdf~l~d~~G~~v~L~~~kGK~vll~F~-a~wC~~C~~~~~~l~~~~~~~~~~~~~vv~vs~d~~~~~~~~~~  108 (176)
T d1jfua_          30 ASAPLKLPDLAFEDADGKPKKLSDFRGKTLLVNLW-ATWCVPCRKEMPALDELQGKLSGPNFEVVAINIDTRDPEKPKTF  108 (176)
T ss_dssp             CCSCCBCCCCEEECTTSCEEEGGGGTTSEEEEEEE-CTTCHHHHHHHHHHHHHHHHHCBTTEEEEEEECCCSCTTHHHHH
T ss_pred             cCCCCcCCCeEEECCCcCEEeHHHhCCCEEEEEec-cCcccchHHHHHhhhhccccccccccccccccccccchhhhhhh
Confidence            44667899999999999999999999999999999 9999999999999999999999889999999976  56899999


Q ss_pred             HHHcCCCe-EEEEcCChhHHHHhCCCccCCCCCCccEEEEEcCCCcEEEEEeCCCCCCccHHHHHHHHh
Q 028030          146 AKKYRLPY-TLLSDEGNKVRKEWGVPADFFGSLPGRQTYILDKNGVVQLIYNNQFQPEKHIDETLKFLQ  213 (215)
Q Consensus       146 ~~~~~~~~-~~~~d~~~~~~~~~g~~~~~~g~~p~~~~~lid~~G~v~~~~~g~~~~~~~~~~il~~l~  213 (215)
                      ++++++++ +++.|....+.+.|+......+ +|  ++||||++|+|+.++.|..+.+  .+++++.|+
T Consensus       109 ~~~~~~~~~~~~~d~~~~~~~~~~~~~~v~~-~P--~~~lID~~G~I~~~~~G~~~~~--~~e~~~~l~  172 (176)
T d1jfua_         109 LKEANLTRLGYFNDQKAKVFQDLKAIGRALG-MP--TSVLVDPQGCEIATIAGPAEWA--SEDALKLIR  172 (176)
T ss_dssp             HHHTTCCTTCCEECTTCHHHHHHHTTTCCSS-SS--EEEEECTTSBEEEEEESCCCTT--SHHHHHHHH
T ss_pred             HhhhCCcceeeeecchhHHHHHHhhhccCCC-CC--eEEEEcCCCEEEEEEECCCCCC--hHHHHHHHH
Confidence            99999985 4778888888877765543322 77  9999999999999999865433  256666665

>d1xcca_ c.47.1.10 (A:) 1-Cys peroxiredoxin {Plasmodium yoelii yoelii [TaxId: 73239]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: 1-Cys peroxiredoxin
species: Plasmodium yoelii yoelii [TaxId: 73239]

Probab=99.95  E-value=1.3e-28  Score=192.47  Aligned_cols=148  Identities=20%  Similarity=0.307  Sum_probs=130.9

Q ss_pred             cCCCCCCCCCeEEeCCCCC-eeecCCc-CCCcEEEEEEcCCCChhhHHHHHHHHHHHHHHHHcCcEEEEEeCCCHHHHHH
Q 028030           67 KVSKGQAPPSFTLKDQEGR-NVSLSKF-KGKPVVVYFYPADETPGCTKQACAFRDSYEKFKKAGAEVIGISGDDSSSHKA  144 (215)
Q Consensus        67 ~~~~g~~~P~f~l~~~~g~-~~~l~~~-~gk~~ll~f~~a~~C~~C~~~~~~l~~l~~~~~~~~v~vv~vs~d~~~~~~~  144 (215)
                      .+++|+++|+|++.+.++. .++++++ +|||+||+|||++||+.|..++..|++.+++++++|+++++||.|+.+.+++
T Consensus         1 gi~iGd~aPdF~l~~~~~~g~i~l~d~~~gk~vVLfFyP~dfTpvCttEl~~f~~~~~eF~~~~~~vigiS~Ds~~sh~~   80 (219)
T d1xcca_           1 GYHLGATFPNFTAKASGIDGDFELYKYIENSWAILFSHPNDFTPVCTTELAELGKMHEDFLKLNCKLIGFSCNSKESHDK   80 (219)
T ss_dssp             CCCTTCBCCCCEECBTTCSSCEEHHHHTTTSEEEEECCSCTTCHHHHHHHHHHHHTHHHHHTTTEEEEEEESSCHHHHHH
T ss_pred             CCcCCCCCCCcEeeccCCCCcEEeHHHcCCCeEEEEEEcCCCCcccchhHHHHHHhhhhhcccceEEEeecCccHhHHhH
Confidence            3689999999999876432 5899996 8999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHc-------CCCeEEEEcCChhHHHHhCCCccCCC-----CCCccEEEEEcCCCcEEEEEeCCCCCCccHHHHHHHH
Q 028030          145 FAKKY-------RLPYTLLSDEGNKVRKEWGVPADFFG-----SLPGRQTYILDKNGVVQLIYNNQFQPEKHIDETLKFL  212 (215)
Q Consensus       145 ~~~~~-------~~~~~~~~d~~~~~~~~~g~~~~~~g-----~~p~~~~~lid~~G~v~~~~~g~~~~~~~~~~il~~l  212 (215)
                      |.++.       +++||++.|+++++++.||+.....+     .++.|.+||||++|+|++.+........+++++|+.|
T Consensus        81 w~~~~~~~~~~~~l~fpllsD~~~~va~~ygv~~~~~~~~~~~~~~~R~tFiIDp~g~Ir~~~~~~~~~gr~~~EiLr~l  160 (219)
T d1xcca_          81 WIEDIKYYGKLNKWEIPIVCDESRELANKLKIMDEQEKDITGLPLTCRCLFFISPEKKIKATVLYPATTGRNAHEILRVL  160 (219)
T ss_dssp             HHHHHHHHHTCSCCCCCEEECTTSHHHHHHTCEEEEEECTTSCEEECEEEEEECTTSBEEEEEEECTTBCCCHHHHHHHH
T ss_pred             HhhhhHhhcccCCCCcccccccccHHHHHhCCcccccccCcccceeeeeeEEEcCcceEEEEEEeCCCcccCHHHHHHHH
Confidence            99875       78999999999999999999753211     1346799999999999999877777888999999998


Q ss_pred             hc
Q 028030          213 QS  214 (215)
Q Consensus       213 ~~  214 (215)
                      ++
T Consensus       161 ~a  162 (219)
T d1xcca_         161 KS  162 (219)
T ss_dssp             HH
T ss_pred             HH
Confidence            74

>d2b5xa1 c.47.1.10 (A:1-143) thiol:disulfide oxidoreductase YkuV {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: thiol:disulfide oxidoreductase YkuV
species: Bacillus subtilis [TaxId: 1423]

Probab=99.95  E-value=9.9e-28  Score=176.50  Aligned_cols=134  Identities=15%  Similarity=0.248  Sum_probs=117.8

Q ss_pred             CCCCCCCCCeEEeC--CCCCeeecCCcCCCcEEEEEEcCCCChhhHHHHHHHHHHHHHHHHcCcEEEEEeCC------CH
Q 028030           68 VSKGQAPPSFTLKD--QEGRNVSLSKFKGKPVVVYFYPADETPGCTKQACAFRDSYEKFKKAGAEVIGISGD------DS  139 (215)
Q Consensus        68 ~~~g~~~P~f~l~~--~~g~~~~l~~~~gk~~ll~f~~a~~C~~C~~~~~~l~~l~~~~~~~~v~vv~vs~d------~~  139 (215)
                      +++|+++|+|++.+  .+|+.++++.++||++||+|| ++||++|..++|.|+++++++++ ++++|+|+.+      +.
T Consensus         1 ~k~g~~aP~~~~~~~~~ng~~~~~~~~~~k~vvl~f~-a~~C~~C~~~~p~l~~l~~~~~~-~~~~i~v~~~~~~~~~~~   78 (143)
T d2b5xa1           1 MKLRQPMPELTGEKAWLNGEVTREQLIGEKPTLIHFW-SISCHLCKEAMPQVNEFRDKYQD-QLNVVAVHMPRSEDDLDP   78 (143)
T ss_dssp             CCTTCBCCCCCCCSEEESCCCCHHHHTTTSCEEEEEE-CTTCHHHHHHHHHHHHHHHHHTT-TSEEEEEECCCSTTTSSH
T ss_pred             CCCCCcCCCCcCCccCcCCeEecHHHhCCCEEEEEEE-cCCCcchhhhhhhhhhhhhhhhc-cccceeEEeeccccccch
Confidence            46899999999777  589988888899999999999 99999999999999999999986 5999999864      35


Q ss_pred             HHHHHHHHHcCCCeEEEEcCChhHHHHhCCCccCCCCCCccEEEEEcCCCcEEEEEeCCCCCCccHHHHHHH
Q 028030          140 SSHKAFAKKYRLPYTLLSDEGNKVRKEWGVPADFFGSLPGRQTYILDKNGVVQLIYNNQFQPEKHIDETLKF  211 (215)
Q Consensus       140 ~~~~~~~~~~~~~~~~~~d~~~~~~~~~g~~~~~~g~~p~~~~~lid~~G~v~~~~~g~~~~~~~~~~il~~  211 (215)
                      +.+++|.++++++||++.|.++++.+.|++..     +|  ++|+||++|+|++.+.|... .+.+++.++.
T Consensus        79 ~~~~~~~~~~~~~~p~~~D~~~~~~~~~~v~~-----~P--~~~~id~~G~i~~~~~G~~~-~~~l~~~l~~  142 (143)
T d2b5xa1          79 GKIKETAAEHDITQPIFVDSDHALTDAFENEY-----VP--AYYVFDKTGQLRHFQAGGSG-MKMLEKRVNR  142 (143)
T ss_dssp             HHHHHHHHHTTCCSCEEECSSCHHHHHTCCCC-----SS--EEEEECTTCBEEEEEESCST-THHHHHHHHH
T ss_pred             hhhhhHHHhhccCccccccCccchHHHcCCCc-----CC--EEEEECCCCEEEEEEECCCC-HHHHHHHHHh
Confidence            67899999999999999999999999999987     88  99999999999999998543 3445555554

>d1q98a_ c.47.1.10 (A:) Thiol peroxidase Tpx {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Thiol peroxidase Tpx
species: Haemophilus influenzae [TaxId: 727]

Probab=99.95  E-value=4.9e-28  Score=182.21  Aligned_cols=144  Identities=20%  Similarity=0.264  Sum_probs=123.5

Q ss_pred             cCCCCCCCCCeEEeCCCCCeeecCCcCCCcEEEEEEcCCCChhhHHHHHHHHHHHHHHHHcCcEEEEEeCCCHHHHHHHH
Q 028030           67 KVSKGQAPPSFTLKDQEGRNVSLSKFKGKPVVVYFYPADETPGCTKQACAFRDSYEKFKKAGAEVIGISGDDSSSHKAFA  146 (215)
Q Consensus        67 ~~~~g~~~P~f~l~~~~g~~~~l~~~~gk~~ll~f~~a~~C~~C~~~~~~l~~l~~~~~~~~v~vv~vs~d~~~~~~~~~  146 (215)
                      .+++|+++|+|++.+.+|+.++|++++||++||+||++.||+.|..+++.|++.+++++  |+.+++||.|+++.+++|.
T Consensus        15 ~p~vG~~APdF~L~d~~g~~v~Lsd~~Gk~vVL~f~p~~~tp~C~~e~~~~~~~~~~~~--~~~vi~iS~d~~~~~~~~~   92 (164)
T d1q98a_          15 FPQVGEIVENFILVGNDLADVALNDFASKRKVLNIFPSIDTGVCATSVRKFNQQAAKLS--NTIVLCISADLPFAQARFC   92 (164)
T ss_dssp             CCCTTCBCCCCEEECTTSCEEEGGGGTTSEEEEEECSCSCSSCCCHHHHHHHHHHHHST--TEEEEEEESSCHHHHTTCT
T ss_pred             CCCCCCCCCCcEEECCCCCEEeehhhCCcEEEEEecCccccCcccHHHHHHHHHHHHhc--cceEEeecCCcHHHHHHHH
Confidence            46899999999999999999999999999999999999999999999999999999986  6999999999999999999


Q ss_pred             HHcCCCe-EEEEc-CChhHHHHhCCCccCCC--CCCccEEEEEcCCCcEEEEEeCC-CCCCccHHHHHHHH
Q 028030          147 KKYRLPY-TLLSD-EGNKVRKEWGVPADFFG--SLPGRQTYILDKNGVVQLIYNNQ-FQPEKHIDETLKFL  212 (215)
Q Consensus       147 ~~~~~~~-~~~~d-~~~~~~~~~g~~~~~~g--~~p~~~~~lid~~G~v~~~~~g~-~~~~~~~~~il~~l  212 (215)
                      +++++.+ ..+.| .+..+.+.||+.....+  .+..|.+||||++|+|++.+... ...+.+.+++++.|
T Consensus        93 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~g~~~Ra~fvID~~G~I~y~~~~~~~~~epd~~~~l~~L  163 (164)
T d1q98a_          93 GAEGIENAKTVSTFRNHALHSQLGVDIQTGPLAGLTSRAVIVLDEQNNVLHSQLVEEIKEEPNYEAALAVL  163 (164)
T ss_dssp             TTTTCTTEEEEECTTCTHHHHHTTCEECSSTTTTSBCCEEEEECTTSBEEEEEECSBTTSCCCHHHHHHTT
T ss_pred             HHhCCccccccccccchhHHHhhceecccCccccCcccEEEEECCCCEEEEEEECCCCCCCCCHHHHHHhh
Confidence            9999974 44444 46789999998754321  24567999999999999998654 34456889998876

>d2h01a1 c.47.1.10 (A:2-171) Thioredoxin peroxidase 2 (thioredoxin peroxidase B, 2-cys peroxiredoxin) {Plasmodium yoelii [TaxId: 5861]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Thioredoxin peroxidase 2 (thioredoxin peroxidase B, 2-cys peroxiredoxin)
species: Plasmodium yoelii [TaxId: 5861]

Probab=99.95  E-value=1.2e-27  Score=181.07  Aligned_cols=140  Identities=33%  Similarity=0.507  Sum_probs=124.5

Q ss_pred             CCCCeEEe----CCCCCeeecCCcCC-CcEEEEEEcCCCChhhHHHHHHHHHHHHHHHHcCcEEEEEeCCCHHHHHHHHH
Q 028030           73 APPSFTLK----DQEGRNVSLSKFKG-KPVVVYFYPADETPGCTKQACAFRDSYEKFKKAGAEVIGISGDDSSSHKAFAK  147 (215)
Q Consensus        73 ~~P~f~l~----~~~g~~~~l~~~~g-k~~ll~f~~a~~C~~C~~~~~~l~~l~~~~~~~~v~vv~vs~d~~~~~~~~~~  147 (215)
                      ++|+|+++    |.+|++++|+|++| |++||+|||+.||+.|..++..|++.++++++.|++||+||.|+.+.+++|.+
T Consensus         1 kAPdF~l~~~~gd~~~~~vsL~d~~g~k~vVl~FyP~~~tp~Ct~e~~~f~~~~~~f~~~g~~vigIS~D~~~~~~~~~~   80 (170)
T d2h01a1           1 QAPSFKAEAVFGDNTFGEVSLSDFIGKKYVLLYFYPLDFTFVCPSEIIALDKALDSFKERNVELLGCSVDSKFTHLAWKK   80 (170)
T ss_dssp             BCCCCEEEEECTTSCEEEEEGGGGTTTCEEEEEECSCSSCSSCCHHHHHHHHTHHHHHHTTEEEEEEESSCHHHHHHHHT
T ss_pred             CCCCeEeeeecCCCCccEEehHHHCCCCeEEEEEECCCCCCccchhhHHHhhhhhhhhcCCeeEecccCCcHHHHHhHhh
Confidence            48999998    45667899999998 78999999999999999999999999999999999999999999999999987


Q ss_pred             Hc-------CCCeEEEEcCChhHHHHhCCCccCCCCCCccEEEEEcCCCcEEEEEeCCCCCCccHHHHHHHHhc
Q 028030          148 KY-------RLPYTLLSDEGNKVRKEWGVPADFFGSLPGRQTYILDKNGVVQLIYNNQFQPEKHIDETLKFLQS  214 (215)
Q Consensus       148 ~~-------~~~~~~~~d~~~~~~~~~g~~~~~~g~~p~~~~~lid~~G~v~~~~~g~~~~~~~~~~il~~l~~  214 (215)
                      ++       +++|+++.|.++++.+.||+..+.  .++.|.+||||++|+|++.+.+......+.+++|++|++
T Consensus        81 ~~~~~~~~~~~~f~llsD~~~~~~~~ygv~~~~--~~~~R~tfiId~~G~I~~~~~~~~~~~~~~~eil~~l~~  152 (170)
T d2h01a1          81 TPLSQGGIGNIKHTLISDISKSIARSYDVLFNE--SVALRAFVLIDKQGVVQHLLVNNLALGRSVDEILRLIDA  152 (170)
T ss_dssp             SCGGGTCCCSCSSEEEECTTSHHHHHTTCEETT--TEECCEEEEECTTSBEEEEEEGGGSSGGGHHHHHHHHHH
T ss_pred             hhhhhccccccCCceeEcCccHHHHHhCCcccc--ccceeeeEEEcCCCeEEEEEEecCCCCCCHHHHHHHHHH
Confidence            63       478999999999999999996532  256679999999999999998877777788999988764

>d1zzoa1 c.47.1.10 (A:45-178) Lipoprotein DsbF {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Lipoprotein DsbF
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.94  E-value=2.1e-26  Score=167.38  Aligned_cols=126  Identities=23%  Similarity=0.471  Sum_probs=108.1

Q ss_pred             CCeEEeCCCCCeeecCCcCCCcEEEEEEcCCCChhhHHHHHHHHHHHHHHHHcCcEEEEEeC-CCHHHHHHHHHHcCCC-
Q 028030           75 PSFTLKDQEGRNVSLSKFKGKPVVVYFYPADETPGCTKQACAFRDSYEKFKKAGAEVIGISG-DDSSSHKAFAKKYRLP-  152 (215)
Q Consensus        75 P~f~l~~~~g~~~~l~~~~gk~~ll~f~~a~~C~~C~~~~~~l~~l~~~~~~~~v~vv~vs~-d~~~~~~~~~~~~~~~-  152 (215)
                      .+|+++|.||+++++++++||++||+|| ++||++|+.++|.|.+++++++  ++.+++|+. |+.+..++|++++++. 
T Consensus         6 ~df~~~~~~G~~~~l~~~~Gk~vll~fw-a~wC~~C~~~~p~l~~l~~~~~--~~~~v~v~~~d~~~~~~~~~~~~~~~~   82 (134)
T d1zzoa1           6 LQFSAKTLDGHDFHGESLLGKPAVLWFW-APWCPTCQGEAPVVGQVAASHP--EVTFVGVAGLDQVPAMQEFVNKYPVKT   82 (134)
T ss_dssp             GCCEEEBTTSCEEEGGGGTTSCEEEEEE-CTTCHHHHHHHHHHHHHHHHCT--TSEEEEEECSSCHHHHHHHHHHTTCTT
T ss_pred             cceeEEcCCCCEEeHHHhCCCEEEEEec-ccccCcccccchhhHHHHhhhc--ccccccccccccchhHHHHHHhcCCcc
Confidence            4799999999999999999999999999 9999999999999999999886  477888776 5778899999999986 


Q ss_pred             eEEEEcCChhHHHHhCCCccCCCCCCccEEEEEcCCCcEEEEEeCCCCCCccHHHHHHHH
Q 028030          153 YTLLSDEGNKVRKEWGVPADFFGSLPGRQTYILDKNGVVQLIYNNQFQPEKHIDETLKFL  212 (215)
Q Consensus       153 ~~~~~d~~~~~~~~~g~~~~~~g~~p~~~~~lid~~G~v~~~~~g~~~~~~~~~~il~~l  212 (215)
                      |+++.|.++.+.+.||+..     +|  ++|+||++|+|++. .|..+ .+.+++.++.|
T Consensus        83 ~~~l~D~~~~~~~~~~v~~-----~P--~~~iiD~~G~i~~~-~g~~~-~~~l~~~i~~L  133 (134)
T d1zzoa1          83 FTQLADTDGSVWANFGVTQ-----QP--AYAFVDPHGNVDVV-RGRMS-QDELTRRVTAL  133 (134)
T ss_dssp             SEEEECTTCHHHHHTTCCS-----SS--EEEEECTTCCEEEE-ESCCC-HHHHHHHHHHH
T ss_pred             eeEEeeccchHHHhcCCCc-----cC--eEEEECCCCeEEEE-ECCCC-HHHHHHHHHhh
Confidence            8999999999999999987     89  99999999999764 45433 23344444443

>d1knga_ c.47.1.10 (A:) Thioredoxin-like protein CcmG (CycY, DsbE) {Bradyrhizobium japonicum [TaxId: 375]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Thioredoxin-like protein CcmG (CycY, DsbE)
species: Bradyrhizobium japonicum [TaxId: 375]

Probab=99.93  E-value=8.7e-26  Score=166.11  Aligned_cols=130  Identities=21%  Similarity=0.395  Sum_probs=105.7

Q ss_pred             CCCCeEEeCCCC--------CeeecCCcCCCcEEEEEEcCCCChhhHHHHHHHHHHHHHHHHcCcEEEEEeCC-CHHHHH
Q 028030           73 APPSFTLKDQEG--------RNVSLSKFKGKPVVVYFYPADETPGCTKQACAFRDSYEKFKKAGAEVIGISGD-DSSSHK  143 (215)
Q Consensus        73 ~~P~f~l~~~~g--------~~~~l~~~~gk~~ll~f~~a~~C~~C~~~~~~l~~l~~~~~~~~v~vv~vs~d-~~~~~~  143 (215)
                      ++|+|++++.+|        ..+++++++||++||+|| ++||++|+.++|.+.++++++   ++++++|+.+ +....+
T Consensus         2 paP~~~lp~~~g~~~~~~~~~~~~~~~~kgK~vll~fw-a~wC~~C~~~~p~l~~l~~~~---~~~~~~i~~~~~~~~~~   77 (144)
T d1knga_           2 PAPQTALPPLEGLQADNVQVPGLDPAAFKGKVSLVNVW-ASWCVPCHDEAPLLTELGKDK---RFQLVGINYKDAADNAR   77 (144)
T ss_dssp             BCCCCCBCCCTTCEETTEECCCBCGGGGTTSCEEEEEE-CTTCHHHHHHHHHHHHHTTCT---TSEEEEEEESCCHHHHH
T ss_pred             CCCCCCCCCCCCccccCCcCCccCHHHhCCCEEEEEee-ccccccccccCchhhhhhhcc---CceeEEEEeeechHHHH
Confidence            456666655544        778899999999999999 999999999999999886543   6899998864 567889


Q ss_pred             HHHHHcCCCeE-EEEcCChhHHHHhCCCccCCCCCCccEEEEEcCCCcEEEEEeCCCCCCccHHHHHHHHh
Q 028030          144 AFAKKYRLPYT-LLSDEGNKVRKEWGVPADFFGSLPGRQTYILDKNGVVQLIYNNQFQPEKHIDETLKFLQ  213 (215)
Q Consensus       144 ~~~~~~~~~~~-~~~d~~~~~~~~~g~~~~~~g~~p~~~~~lid~~G~v~~~~~g~~~~~~~~~~il~~l~  213 (215)
                      +|.++++..++ ++.|+++++.+.||+..     +|  ++++||++|+|++.+.|..+.+...+.+.+.|+
T Consensus        78 ~~~~~~~~~~~~~~~d~~~~~~~~~~v~~-----~P--~~~liD~~G~i~~~~~G~~~~~~l~~~i~~~l~  141 (144)
T d1knga_          78 RFLGRYGNPFGRVGVDANGRASIEWGVYG-----VP--ETFVVGREGTIVYKLVGPITPDNLRSVLLPQME  141 (144)
T ss_dssp             HHHHHHCCCCSEEEEETTSHHHHHTTCCS-----SC--EEEEECTTSBEEEEEESCCCHHHHHHTHHHHHH
T ss_pred             HHHHHcCCccccccccccchhhhhcCccc-----cc--eEEEEcCCCeEEEEEeCCCCHHHHHHHHHHHHH
Confidence            99999999865 67899999999999987     89  999999999999999987654433344555554

>d2fy6a1 c.47.1.10 (A:33-175) Peptide methionine sulfoxide reductase MsrA/MsrB, N-terminal domain {Neisseria meningitidis serogroup A [TaxId: 65699]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Peptide methionine sulfoxide reductase MsrA/MsrB, N-terminal domain
species: Neisseria meningitidis serogroup A [TaxId: 65699]

Probab=99.92  E-value=4.4e-26  Score=167.36  Aligned_cols=127  Identities=18%  Similarity=0.265  Sum_probs=107.2

Q ss_pred             CeEEeCCCCCeeecCCcCCCcEEEEEEcCCCChhhHHHHHHHHHHHHHHHHcCcEEEEEeCC------CHHHHHHHHHHc
Q 028030           76 SFTLKDQEGRNVSLSKFKGKPVVVYFYPADETPGCTKQACAFRDSYEKFKKAGAEVIGISGD------DSSSHKAFAKKY  149 (215)
Q Consensus        76 ~f~l~~~~g~~~~l~~~~gk~~ll~f~~a~~C~~C~~~~~~l~~l~~~~~~~~v~vv~vs~d------~~~~~~~~~~~~  149 (215)
                      ..++++.||+++++++++||++||+|| ++||++|+.+++.|++++++++..++.+++|+.+      +.+...+|....
T Consensus         5 ~~~l~~~~~~~~~l~~~~gk~vvl~F~-a~wC~~C~~~~~~l~~l~~~~~~~~~~~i~v~~~~~~~~~~~~~~~~~~~~~   83 (143)
T d2fy6a1           5 LSTLKTADNRPASVYLKKDKPTLIKFW-ASWCPLCLSELGQTEKWAQDAKFSSANLITVASPGFLHEKKDGDFQKWYAGL   83 (143)
T ss_dssp             HHTCEETTSCBGGGGCCTTSCEEEEEE-CTTCHHHHTTHHHHHHHHHCGGGTTSEEEEEECTTSTTCCCTTHHHHHHTTS
T ss_pred             cceeECCCCCEeeHHHhCCCEEEEEEE-CCCCccccccCcchhhhhhhhccCCcEEEEEeeeecccccchhhhhhhhhhc
Confidence            346889999999999999999999999 9999999999999999999999989999999864      234556666555


Q ss_pred             C-CCeEEEEcCChhHHHHhCCCccCCCCCCccEEEEEcCCCcEEEEEeCCCCCCccHHHHHHH
Q 028030          150 R-LPYTLLSDEGNKVRKEWGVPADFFGSLPGRQTYILDKNGVVQLIYNNQFQPEKHIDETLKF  211 (215)
Q Consensus       150 ~-~~~~~~~d~~~~~~~~~g~~~~~~g~~p~~~~~lid~~G~v~~~~~g~~~~~~~~~~il~~  211 (215)
                      + ..|+++.|+++.+.+.||+..     +|  ++++||++|+|++.+.|..+. +.+.++++.
T Consensus        84 ~~~~~~~~~D~~~~~~~~~~v~~-----~P--~~~liD~~G~i~~~~~G~~~~-~~~~~~l~~  138 (143)
T d2fy6a1          84 NYPKLPVVTDNGGTIAQSLNISV-----YP--SWALIGKDGDVQRIVKGSINE-AQALALIRD  138 (143)
T ss_dssp             CCTTSCEEECTTCHHHHHTTCCS-----SS--EEEEECTTSCEEEEEESCCCH-HHHHHHHHC
T ss_pred             CCcccccccccchHHHHHcCCCc-----cC--EEEEECCCCEEEEEEECCCCH-HHHHHHHHH
Confidence            5 569999999999999999987     89  999999999999999996542 334444443

>d1z5ye1 c.47.1.10 (E:49-184) Thioredoxin-like protein CcmG (CycY, DsbE) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Thioredoxin-like protein CcmG (CycY, DsbE)
species: Escherichia coli [TaxId: 562]

Probab=99.91  E-value=2.7e-24  Score=156.56  Aligned_cols=112  Identities=21%  Similarity=0.363  Sum_probs=96.3

Q ss_pred             eCCCCCeeecCCc-CCCcEEEEEEcCCCChhhHHHHHHHHHHHHHHHHcCcEEEEEeCC-CHHHHHHHHHHcCCC-eEEE
Q 028030           80 KDQEGRNVSLSKF-KGKPVVVYFYPADETPGCTKQACAFRDSYEKFKKAGAEVIGISGD-DSSSHKAFAKKYRLP-YTLL  156 (215)
Q Consensus        80 ~~~~g~~~~l~~~-~gk~~ll~f~~a~~C~~C~~~~~~l~~l~~~~~~~~v~vv~vs~d-~~~~~~~~~~~~~~~-~~~~  156 (215)
                      .|.+|+.++.+++ +||++||+|| |+||++|+.++|.|++++    ++++.+++++.+ +......+..+.+.. ++++
T Consensus         5 ld~~g~~~~~~~l~~Gk~vvl~Fw-atWC~pC~~e~p~l~~~~----~~~~~vi~i~~~~~~~~~~~~~~~~~~~~~~~~   79 (136)
T d1z5ye1           5 LDNPGQFYQADVLTQGKPVLLNVW-ATWCPTSRAEHQYLNQLS----AQGIRVVGMNYKDDRQKAISWLKELGNPYALSL   79 (136)
T ss_dssp             SSSTTCEECHHHHHSSSCEEEEEE-CTTCHHHHHHHHHHHHHH----HTTCCEEEEEESCCHHHHHHHHHHHCCCCSEEE
T ss_pred             ccCCCcEecHHHHcCCCEEEEEEE-cCcCCCcCccccchhhhh----hhhhhhcccccccchhhhHHHHHHcCCccceee
Confidence            3566999999998 8999999999 999999999999998874    458999999875 557778888888877 4577


Q ss_pred             EcCChhHHHHhCCCccCCCCCCccEEEEEcCCCcEEEEEeCCCCCCc
Q 028030          157 SDEGNKVRKEWGVPADFFGSLPGRQTYILDKNGVVQLIYNNQFQPEK  203 (215)
Q Consensus       157 ~d~~~~~~~~~g~~~~~~g~~p~~~~~lid~~G~v~~~~~g~~~~~~  203 (215)
                      .|+++.+...||+..     +|  +++|||++|+|+..+.|..+.+.
T Consensus        80 ~d~~~~~~~~~~v~~-----~P--~~~liD~~G~i~~~~~G~~~~~~  119 (136)
T d1z5ye1          80 FDGDGMLGLDLGVYG-----AP--ETFLIDGNGIIRYRHAGDLNPRV  119 (136)
T ss_dssp             EESSCHHHHHHTCCS-----BS--EEEEECTTSCEEEEEESCCCHHH
T ss_pred             cccchhHHHhcccCC-----cc--eEEEEcCCCEEEEEEEcCCCHHH
Confidence            899999999999997     89  99999999999999999654443

>d1o73a_ c.47.1.10 (A:) Tryparedoxin I {Trypanosoma brucei brucei [TaxId: 5702]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Tryparedoxin I
species: Trypanosoma brucei brucei [TaxId: 5702]

Probab=99.91  E-value=1.7e-24  Score=159.25  Aligned_cols=117  Identities=26%  Similarity=0.337  Sum_probs=99.0

Q ss_pred             CCCCCCCeEEeCCCCCeeecCCcCCCcEEEEEEcCCCChhhHHHHHHHHHHHHHHH-HcCcEEEEEeCCC-HHHHHHHHH
Q 028030           70 KGQAPPSFTLKDQEGRNVSLSKFKGKPVVVYFYPADETPGCTKQACAFRDSYEKFK-KAGAEVIGISGDD-SSSHKAFAK  147 (215)
Q Consensus        70 ~g~~~P~f~l~~~~g~~~~l~~~~gk~~ll~f~~a~~C~~C~~~~~~l~~l~~~~~-~~~v~vv~vs~d~-~~~~~~~~~  147 (215)
                      +|+.+|+++....+|.+++|++++||++||+|| ++||++|+.++|.|++++++|. +.++++|+|+.|+ .+..+++.+
T Consensus         4 ~~k~~P~~~~~~~~~~~v~l~~~~GK~vvl~Fw-atwC~~C~~~~p~l~~l~~~~~~~~~~~vi~is~d~~~~~~~~~~~   82 (144)
T d1o73a_           4 LAKYLPGATNLLSKSGEVSLGSLVGKTVFLYFS-ASWCPPCRGFTPVLAEFYEKHHVAKNFEVVLISWDENESDFHDYYG   82 (144)
T ss_dssp             GGGTSCTTCCBBCTTSCBCSGGGTTCEEEEEEE-CTTCHHHHHHHHHHHHHHHHHTTTTTEEEEEEECCSSHHHHHHHHT
T ss_pred             cccCCCCceeeccCCCEEeHHHhCCCEEEEEeC-hhhCccchhhhHHHHHHHHHHhhccCeEEEEEecchhHHHHHHHHH
Confidence            578999999999999999999999999999999 9999999999999999999996 4589999999975 467788887


Q ss_pred             HcCCCeEEEEcC---ChhHHHHhCCCccCCCCCCccEEEEEcCC-CcEEEEE
Q 028030          148 KYRLPYTLLSDE---GNKVRKEWGVPADFFGSLPGRQTYILDKN-GVVQLIY  195 (215)
Q Consensus       148 ~~~~~~~~~~d~---~~~~~~~~g~~~~~~g~~p~~~~~lid~~-G~v~~~~  195 (215)
                      +.+. +.+..|.   ..++.+.||+.+     +|  ++||||++ |+|+...
T Consensus        83 ~~~~-~~~~~~~~~~~~~l~~~y~v~~-----~P--t~~lID~~~G~Ii~~~  126 (144)
T d1o73a_          83 KMPW-LALPFDQRSTVSELGKTFGVES-----IP--TLITINADTGAIIGTQ  126 (144)
T ss_dssp             TCSS-EECCTTCHHHHHHHHHHHTCCS-----SS--EEEEEETTTCCEEESC
T ss_pred             hccc-cceeeeccchHHHHHHHcCCCc-----CC--EEEEEECCCCEEEeec
Confidence            7654 3333333   246889999997     99  99999997 8998643

>d1xzoa1 c.47.1.10 (A:3-174) Thioredoxin-like protein Sco1 (YpmQ), soluble domain {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Thioredoxin-like protein Sco1 (YpmQ), soluble domain
species: Bacillus subtilis [TaxId: 1423]

Probab=99.90  E-value=3.5e-23  Score=156.45  Aligned_cols=141  Identities=22%  Similarity=0.310  Sum_probs=110.5

Q ss_pred             CCCCCCCeEEeCCCCCeeecCCcCCCcEEEEEEcCCCCh-hhHHHHHHHHHHHHHHHHc--CcEEEEEeCC----CHHHH
Q 028030           70 KGQAPPSFTLKDQEGRNVSLSKFKGKPVVVYFYPADETP-GCTKQACAFRDSYEKFKKA--GAEVIGISGD----DSSSH  142 (215)
Q Consensus        70 ~g~~~P~f~l~~~~g~~~~l~~~~gk~~ll~f~~a~~C~-~C~~~~~~l~~l~~~~~~~--~v~vv~vs~d----~~~~~  142 (215)
                      ++.++|+|+++|.+|+.+++++++||++||+|| .+||+ .|...++.|+++++++++.  .+.+|+|++|    +++.+
T Consensus         7 ~~~~~p~F~l~d~~G~~vsl~d~~Gk~vvl~F~-~t~Cp~~C~~~~~~l~~~~~~~~~~~~~v~~v~isiDp~~Dtp~~l   85 (172)
T d1xzoa1           7 LNYEVEPFTFQNQDGKNVSLESLKGEVWLADFI-FTNCETICPPMTAHMTDLQKKLKAENIDVRIISFSVDPENDKPKQL   85 (172)
T ss_dssp             CCEECCCCEEECTTSCEEETGGGTTCCEEEEEE-CSCCSSCCCSHHHHHHHHHHHHHHTTCCCEEEEEESCTTTCCHHHH
T ss_pred             CCCcCCCeEEEcCCCCEEcHHHhCCCEEEEEEe-cccccccccccchhhhhhhhhhccccccccccccccccccchHHHH
Confidence            667889999999999999999999999999999 88886 7999999999999999864  4889999974    67899


Q ss_pred             HHHHHHcCCC---eEEEEcCChhH-----HHHhCCCcc----CCCCCCccEEEEEcCCCcEEEEEeCCCCCCccHHHHHH
Q 028030          143 KAFAKKYRLP---YTLLSDEGNKV-----RKEWGVPAD----FFGSLPGRQTYILDKNGVVQLIYNNQFQPEKHIDETLK  210 (215)
Q Consensus       143 ~~~~~~~~~~---~~~~~d~~~~~-----~~~~g~~~~----~~g~~p~~~~~lid~~G~v~~~~~g~~~~~~~~~~il~  210 (215)
                      ++|.+.+++.   |.++.+.....     ...|+....    .....+++.+||||++|+|+..+.|...  ...+++++
T Consensus        86 ~~y~~~~~~~~~~w~~lt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~H~~~~~liD~~G~i~~~~~g~~~--~~~~~l~~  163 (172)
T d1xzoa1          86 KKFAANYPLSFDNWDFLTGYSQSEIEEFALKSFKAIVKKPEGEDQVIHQSSFYLVGPDGKVLKDYNGVEN--TPYDDIIS  163 (172)
T ss_dssp             HHHHTTSCCCGGGEEEEBCSCHHHHHHHHHHHHCCCCCCCSSCCSCCSCCEEEEECTTSEEEEEEESSSS--CCHHHHHH
T ss_pred             HHHHHHhccccccceeeccchHHHHHHHHHhheeeEEeccCCCceEeeeeEEEEEcCCCeEEEEEcCCCC--CCHHHHHH
Confidence            9999999876   56777655442     344555421    1223455689999999999999987432  23455655


Q ss_pred             HHh
Q 028030          211 FLQ  213 (215)
Q Consensus       211 ~l~  213 (215)
                      .|+
T Consensus       164 dik  166 (172)
T d1xzoa1         164 DVK  166 (172)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            554

>d1i5ga_ c.47.1.10 (A:) Tryparedoxin II {Crithidia fasciculata [TaxId: 5656]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Tryparedoxin II
species: Crithidia fasciculata [TaxId: 5656]

Probab=99.89  E-value=1.2e-23  Score=154.77  Aligned_cols=110  Identities=20%  Similarity=0.258  Sum_probs=95.4

Q ss_pred             CeEEeCCCCCeeecCCcCCCcEEEEEEcCCCChhhHHHHHHHHHHHHHHHHc-CcEEEEEeCC-CHHHHHHHHHHcCCCe
Q 028030           76 SFTLKDQEGRNVSLSKFKGKPVVVYFYPADETPGCTKQACAFRDSYEKFKKA-GAEVIGISGD-DSSSHKAFAKKYRLPY  153 (215)
Q Consensus        76 ~f~l~~~~g~~~~l~~~~gk~~ll~f~~a~~C~~C~~~~~~l~~l~~~~~~~-~v~vv~vs~d-~~~~~~~~~~~~~~~~  153 (215)
                      .+.+.+.+|+.+++++++||++||+|| |+||++|+.++|.|.+++++++++ +++||+|+.| +.+++++|++++++.+
T Consensus        10 ~~~~l~~~~~~v~ls~l~GK~vll~Fw-AtWC~pC~~~~p~L~~l~~~~~~~~~~~vi~vs~D~~~~~~~~~~~~~~~~~   88 (144)
T d1i5ga_          10 STNVLKGAAADIALPSLAGKTVFFYFS-ASWCPPSRAFTPQLIDFYKAHAEKKNFEVMLISWDESAEDFKDYYAKMPWLA   88 (144)
T ss_dssp             CSEEEETTEEEEEGGGGTTSEEEEEEE-CTTCHHHHHHHHHHHHHHHHHTTTTTEEEEEEECCSSHHHHHHHHTTCSSEE
T ss_pred             chhhccCCCCEeeHHHcCCCEEEEEEE-ecCCchHhhhhHhHHHHHHHHHhccCcEEEEEeccccHHHHHHHHHhCCCCc
Confidence            566777788999999999999999999 999999999999999999999874 7999999998 4578899999988776


Q ss_pred             EEEEcCC--hhHHHHhCCCccCCCCCCccEEEEEcCC-CcEEE
Q 028030          154 TLLSDEG--NKVRKEWGVPADFFGSLPGRQTYILDKN-GVVQL  193 (215)
Q Consensus       154 ~~~~d~~--~~~~~~~g~~~~~~g~~p~~~~~lid~~-G~v~~  193 (215)
                      +.+.|..  ..+.+.||+..     +|  +++|||++ |+|+.
T Consensus        89 ~~~~d~~~~~~l~~~y~v~~-----iP--t~~lid~~~G~vi~  124 (144)
T d1i5ga_          89 LPFEDRKGMEFLTTGFDVKS-----IP--TLVGVEADSGNIIT  124 (144)
T ss_dssp             CCTTCHHHHHHHHHHTTCCS-----SS--EEEEEETTTCCEEE
T ss_pred             eeeEChHHHHHHHHHCCCCC-----cC--EEEEEeCCCCEEEe
Confidence            6555543  35889999997     99  99999996 89974

>d2f8aa1 c.47.1.10 (A:12-195) Glutathione peroxidase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Glutathione peroxidase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.88  E-value=4.6e-22  Score=151.40  Aligned_cols=139  Identities=15%  Similarity=0.197  Sum_probs=107.6

Q ss_pred             CCCCeEEeCCC-CCeeecCCcCCCcEEEEEEcCCCChhhHHHHHHHHHHHHHHHHcCcEEEEEeCC--------CHHHHH
Q 028030           73 APPSFTLKDQE-GRNVSLSKFKGKPVVVYFYPADETPGCTKQACAFRDSYEKFKKAGAEVIGISGD--------DSSSHK  143 (215)
Q Consensus        73 ~~P~f~l~~~~-g~~~~l~~~~gk~~ll~f~~a~~C~~C~~~~~~l~~l~~~~~~~~v~vv~vs~d--------~~~~~~  143 (215)
                      .+.||+++|++ |+.++|++++||++||+|| |+||++|.++++.|++|+++|+++|++|++++.+        +.++++
T Consensus         2 siydf~~~~l~~g~~vsL~~ykGKvvLivN~-AS~Cg~t~~~y~~L~~L~~ky~~~g~~Il~fP~nqF~~qE~~~~~ei~   80 (184)
T d2f8aa1           2 SVYAFSARPLAGGEPVSLGSLRGKVLLIENV-ASLGGTTVRDYTQMNELQRRLGPRGLVVLGFPCNQFGHQENAKNEEIL   80 (184)
T ss_dssp             CGGGCEECBTTCSSCEEGGGGTTSEEEEEEE-CSSSTTHHHHHHHHHHHHHHHGGGTEEEEEEECCCSTTTTCSCHHHHH
T ss_pred             ceeeeEEEECCCCCEecHHHcCCCEEEEEEe-cccCCcchhhhHHHHHhhhhhcccceeEEEeeccccccccccchhhhh
Confidence            56799999986 7889999999999999999 9999999999999999999999999999999864        467899


Q ss_pred             HHHH------HcCCCeEEEEc------CChhHHHHh----CCCccC------------------CCCCCccEEEEEcCCC
Q 028030          144 AFAK------KYRLPYTLLSD------EGNKVRKEW----GVPADF------------------FGSLPGRQTYILDKNG  189 (215)
Q Consensus       144 ~~~~------~~~~~~~~~~d------~~~~~~~~~----g~~~~~------------------~g~~p~~~~~lid~~G  189 (215)
                      ++++      .++++|++...      ..+.+++.+    +...+.                  .....+++.||||++|
T Consensus        81 ~f~~~~~~~~~~~~~f~~~~ki~VnG~~a~ply~~Lk~~~~~~~~~~~~~~~~p~~~~~~~~~~~~i~WNFtKFLIdr~G  160 (184)
T d2f8aa1          81 NSLKYVRPGGGFEPNFMLFEKCEVNGAGAHPLFAFLREALPAPSDDATALMTDPKLITWSPVCRNDVAWNFEKFLVGPDG  160 (184)
T ss_dssp             HHHHHTSSCTTCCCSSEEBCCCCCSSTTCCHHHHHHHHHSCSCTTCSSCCCSSGGGCCSSSCCTTCCCSTTCEEEECTTS
T ss_pred             hhhheeccccccccccccceeeeecCCCCCHHHHHHHhhCCCCccccccccccccccccccccCCCccceEEEEEECCCC
Confidence            9987      46778888642      233444322    211100                  0122366899999999


Q ss_pred             cEEEEEeCCCCCCccHHHHHHHH
Q 028030          190 VVQLIYNNQFQPEKHIDETLKFL  212 (215)
Q Consensus       190 ~v~~~~~g~~~~~~~~~~il~~l  212 (215)
                      +|+.++.+...+++..++|-++|
T Consensus       161 ~vv~rf~~~~~p~~i~~~Ie~lL  183 (184)
T d2f8aa1         161 VPLRRYSRRFQTIDIEPDIEALL  183 (184)
T ss_dssp             CEEEEECTTSCGGGGHHHHHHHH
T ss_pred             CEEEEECCCCCHHHHHHHHHHHh
Confidence            99999998877776555555544

>d1o8xa_ c.47.1.10 (A:) Tryparedoxin I {Crithidia fasciculata [TaxId: 5656]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Tryparedoxin I
species: Crithidia fasciculata [TaxId: 5656]

Probab=99.88  E-value=1.6e-23  Score=153.67  Aligned_cols=117  Identities=21%  Similarity=0.276  Sum_probs=98.6

Q ss_pred             CCCCCCCeEEeCCCCCeeecCCcCCCcEEEEEEcCCCChhhHHHHHHHHHHHHHHHHc-CcEEEEEeCCC-HHHHHHHHH
Q 028030           70 KGQAPPSFTLKDQEGRNVSLSKFKGKPVVVYFYPADETPGCTKQACAFRDSYEKFKKA-GAEVIGISGDD-SSSHKAFAK  147 (215)
Q Consensus        70 ~g~~~P~f~l~~~~g~~~~l~~~~gk~~ll~f~~a~~C~~C~~~~~~l~~l~~~~~~~-~v~vv~vs~d~-~~~~~~~~~  147 (215)
                      +|+.+|+|++.+.+|+++++++++||++||+|| ++||++|+.+++.|.+++++|.++ ++.+|+|+.|+ .+..+.+..
T Consensus         2 ~~k~~P~~~~~~~~g~~v~l~~l~GK~vll~Fw-a~wC~~C~~~~~~l~~l~~~~~~~~~~~~v~is~d~~~~~~~~~~~   80 (144)
T d1o8xa_           2 LDKYLPGIEKLRRGDGEVEVKSLAGKLVFFYFS-ASWCPPARGFTPQLIEFYDKFHESKNFEVVFCTWDEEEDGFAGYFA   80 (144)
T ss_dssp             GGGTSTTCCEEEETTEEEEGGGGTTCEEEEEEE-CTTCHHHHHHHHHHHHHHHHHTTTTTEEEEEEECCCSHHHHHHHHT
T ss_pred             CCCCCCCcEeEcCCCCEEeHHHhCCCEEEEEec-cccccccccccchhHHhhhhcccccccccccccccccHHHHHHHHh
Confidence            467999999999999999999999999999999 999999999999999999999654 79999999875 566666665


Q ss_pred             HcCCC-eEEE-EcCChhHHHHhCCCccCCCCCCccEEEEEcCC-CcEEEE
Q 028030          148 KYRLP-YTLL-SDEGNKVRKEWGVPADFFGSLPGRQTYILDKN-GVVQLI  194 (215)
Q Consensus       148 ~~~~~-~~~~-~d~~~~~~~~~g~~~~~~g~~p~~~~~lid~~-G~v~~~  194 (215)
                      ..... +++. .|...++.+.|++..     +|  +++|||++ |+|+..
T Consensus        81 ~~~~~~~~~~~~d~~~~l~~~y~v~~-----~P--t~~liD~~~G~Vi~~  123 (144)
T d1o8xa_          81 KMPWLAVPFAQSEAVQKLSKHFNVES-----IP--TLIGVDADSGDVVTT  123 (144)
T ss_dssp             TCSSEECCGGGHHHHHHHHHHTTCCS-----SS--EEEEEETTTCCEEES
T ss_pred             hccccceeeecccchhhHHHHcCCCc-----CC--EEEEEeCCCCEEEEE
Confidence            54433 3332 245678999999998     89  99999998 898754

>d1hd2a_ c.47.1.10 (A:) Peroxiredoxin 5 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Peroxiredoxin 5
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.88  E-value=4.2e-22  Score=148.96  Aligned_cols=146  Identities=21%  Similarity=0.292  Sum_probs=117.7

Q ss_pred             cCCCCCCCCCeEEeC-CCCCeeecCCc-CCCcEEEEEEcCCCChhhH-HHHHHHHHHHHHHHHcCcE-EEEEeCCCHHHH
Q 028030           67 KVSKGQAPPSFTLKD-QEGRNVSLSKF-KGKPVVVYFYPADETPGCT-KQACAFRDSYEKFKKAGAE-VIGISGDDSSSH  142 (215)
Q Consensus        67 ~~~~g~~~P~f~l~~-~~g~~~~l~~~-~gk~~ll~f~~a~~C~~C~-~~~~~l~~l~~~~~~~~v~-vv~vs~d~~~~~  142 (215)
                      ++++|+++|+|++.+ .+|+.++++++ +||++||+|+|..||+.|. .+++.+.+.++++.++|.+ +++++.|++..+
T Consensus         2 pikVGd~aP~f~l~~~~~~~~v~l~d~~~gk~vvL~fyP~afTp~Ct~~~~~~~~~~~~~~~~~g~~~i~~~s~~~~~~~   81 (161)
T d1hd2a_           2 PIKVGDAIPAVEVFEGEPGNKVNLAELFKGKKGVLFGVPGAFTPGCSKTHLPGFVEQAEALKAKGVQVVACLSVNDAFVT   81 (161)
T ss_dssp             CCCTTCBCCCCEEECSSTTCEEEHHHHTTTSEEEEEEESCTTCHHHHHTHHHHHHHTHHHHHTTTCCEEEEEESSCHHHH
T ss_pred             CCCCCCcCCCeEEEecCCCcEEEhHHHhCCCeEEEEEEeccccccchhhhhhHHHhhhHHHHHcCCeEEEEEecCchhhh
Confidence            578999999999975 66899999996 8999999999999999995 5888999999999988875 567999999999


Q ss_pred             HHHHHHcCC--CeEEEEcCChhHHHHhCCCccCCC-----CCCccEEEEEcCCCcEEEEEeCCCCCC---ccHHHHHHHH
Q 028030          143 KAFAKKYRL--PYTLLSDEGNKVRKEWGVPADFFG-----SLPGRQTYILDKNGVVQLIYNNQFQPE---KHIDETLKFL  212 (215)
Q Consensus       143 ~~~~~~~~~--~~~~~~d~~~~~~~~~g~~~~~~g-----~~p~~~~~lid~~G~v~~~~~g~~~~~---~~~~~il~~l  212 (215)
                      ++|.+..+.  +++++.|++++++++||+..+..+     ..-++++++|++||+|++.+.......   ...+++|+.|
T Consensus        82 ~~~~~~~~~~~~~~llsD~~~~~a~~~g~~~~~~~~g~~~~~~s~r~~~I~~~G~I~~~~ve~~~~~~~~s~a~~vL~~L  161 (161)
T d1hd2a_          82 GEWGRAHKAEGKVRLLADPTGAFGKETDLLLDDSLVSIFGNRRLKRFSMVVQDGIVKALNVEPDGTGLTCSLAPNIISQL  161 (161)
T ss_dssp             HHHHHHTTCTTTCEEEECTTCHHHHHHTCBCCSTTHHHHSSCCBCCEEEEEETTEEEEEEECTTSSCSSTTSHHHHHHHC
T ss_pred             hhhhhhcccccccccccCCcceeeeeeeeeeccccCccccccEEeEEEEEECCCEEEEEEEeCCCCCCCcCcHHHHHhcC
Confidence            999988776  489999999999999999754322     122346677777999999886432222   3467777654

>d1tp9a1 c.47.1.10 (A:1-162) Plant peroxiredoxin {Western balsam poplar(Populus trichocarpa) [TaxId: 3694]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Plant peroxiredoxin
species: Western balsam poplar(Populus trichocarpa) [TaxId: 3694]

Probab=99.84  E-value=1.4e-20  Score=140.77  Aligned_cols=146  Identities=25%  Similarity=0.347  Sum_probs=117.5

Q ss_pred             ccCCCCCCCCCeEEe----CCCCCeeecCCc-CCCcEEEEEEcCCCChhhH-HHHHHHHHHHHHHHHcC-cEEEEEeCCC
Q 028030           66 AKVSKGQAPPSFTLK----DQEGRNVSLSKF-KGKPVVVYFYPADETPGCT-KQACAFRDSYEKFKKAG-AEVIGISGDD  138 (215)
Q Consensus        66 ~~~~~g~~~P~f~l~----~~~g~~~~l~~~-~gk~~ll~f~~a~~C~~C~-~~~~~l~~l~~~~~~~~-v~vv~vs~d~  138 (215)
                      ..+++|+++|+|++.    +.++++++++++ +||++||+|||..|++.|. .+.+...+..++++++| .++++|++|+
T Consensus         2 ~~l~vGd~~Pdf~l~~~~~~~~~~~~~l~d~~~gk~vVl~f~P~afT~~Ct~e~~~~~~~~~d~~~~~g~~~v~~isvd~   81 (162)
T d1tp9a1           2 APIAVGDVLPDGKLAYFDEQDQLQEVSVHSLVAGKKVILFGVPGAFTPTCSLKHVPGFIEKAGELKSKGVTEILCISVND   81 (162)
T ss_dssp             CCCCTTCBCCCCEEEEECTTSCEEEEESHHHHTTSEEEEEEESCTTCHHHHHTHHHHHHHHHHHHHHTTCCCEEEEESSC
T ss_pred             CCCCCCCCCCCeEEEeecCCCCceEEEHHHHhCCCeEEEEEEecccchhhhhhcchHHHHhhhHHHHcCCcceeeeeccc
Confidence            468999999999986    345678999885 9999999999999999996 56777777788888876 4788999999


Q ss_pred             HHHHHHHHHHcCCC--eEEEEcCChhHHHHhCCCccCC----CCCCccEEEEEcCCCcEEEEEeCCCC-CC-ccHHHHHH
Q 028030          139 SSSHKAFAKKYRLP--YTLLSDEGNKVRKEWGVPADFF----GSLPGRQTYILDKNGVVQLIYNNQFQ-PE-KHIDETLK  210 (215)
Q Consensus       139 ~~~~~~~~~~~~~~--~~~~~d~~~~~~~~~g~~~~~~----g~~p~~~~~lid~~G~v~~~~~g~~~-~~-~~~~~il~  210 (215)
                      ++.+++|....+..  ++++.|+.+++.++||+..+..    |....|.+|||| ||+|++.+..... .+ ...+++|+
T Consensus        82 ~~~~~~~~~~~~~~~~~~~lsD~~~~~~~~~g~~~~~~~~g~g~~~~R~tfiId-dg~I~~~~ve~~~~~~~s~ae~vLk  160 (162)
T d1tp9a1          82 PFVMKAWAKSYPENKHVKFLADGSATYTHALGLELDLQEKGLGTRSRRFALLVD-DLKVKAANIEGGGEFTVSSAEDILK  160 (162)
T ss_dssp             HHHHHHHHHTCTTCSSEEEEECTTSHHHHHTTCEEEETTTTSEEEECCEEEEEE-TTEEEEEEECSSSCCSSCSHHHHHT
T ss_pred             hhhhhhhhhhcccccccccccchhhHHHhhhhhccccccccCCcEEEEEEEEEE-CCEEEEEEEECCCCCccCCHHHHHh
Confidence            99999999988754  9999999999999999874322    123457899999 8999998864321 12 45777776


Q ss_pred             HH
Q 028030          211 FL  212 (215)
Q Consensus       211 ~l  212 (215)
                      .|
T Consensus       161 ~L  162 (162)
T d1tp9a1         161 DL  162 (162)
T ss_dssp             TC
T ss_pred             cC
Confidence            54

>d1wp0a1 c.47.1.10 (A:138-297) Thioredoxin-like protein Sco1 (YpmQ), soluble domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Thioredoxin-like protein Sco1 (YpmQ), soluble domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.84  E-value=4e-20  Score=136.77  Aligned_cols=138  Identities=12%  Similarity=0.191  Sum_probs=109.6

Q ss_pred             CeEEeCCCCCeeecCCcCCCcEEEEEEcCCCCh-hhHHHHHHHHHHHHHHHHcC----cEEEEEeC----CCHHHHHHHH
Q 028030           76 SFTLKDQEGRNVSLSKFKGKPVVVYFYPADETP-GCTKQACAFRDSYEKFKKAG----AEVIGISG----DDSSSHKAFA  146 (215)
Q Consensus        76 ~f~l~~~~g~~~~l~~~~gk~~ll~f~~a~~C~-~C~~~~~~l~~l~~~~~~~~----v~vv~vs~----d~~~~~~~~~  146 (215)
                      ||+++|.+|+++++++++||++||+|| .+||+ .|...++.+.++++++.+.+    +.++.++.    |+.+...++.
T Consensus         2 dF~L~d~~G~~vsl~d~~GK~vll~F~-~t~C~~~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (160)
T d1wp0a1           2 PFSLTTHTGERKTDKDYLGQWLLIYFG-FTHCPDVCPEELEKMIQVVDEIDSITTLPDLTPLFISIDPERDTKEAIANYV   80 (160)
T ss_dssp             CCEEEETTSCEEEGGGGTTSEEEEEEE-CTTCSSHHHHHHHHHHHHHHHHHHCTTSCCEEEEEEESCTTTCCHHHHHHHH
T ss_pred             CeEEEcCCCCEEcHHHhCCCEEEEEEE-CCCCccccccchHHHHHHHHHhhcccccccccccccccCCCcccHHHHHHHH
Confidence            799999999999999999999999999 78885 79999999999999887653    45555664    4568888999


Q ss_pred             HHcCCCeEEEEcCCh---hHHHHhCCCccC--------CCCCCccEEEEEcCCCcEEEEEeCCCCCCccHHHHHHHHhc
Q 028030          147 KKYRLPYTLLSDEGN---KVRKEWGVPADF--------FGSLPGRQTYILDKNGVVQLIYNNQFQPEKHIDETLKFLQS  214 (215)
Q Consensus       147 ~~~~~~~~~~~d~~~---~~~~~~g~~~~~--------~g~~p~~~~~lid~~G~v~~~~~g~~~~~~~~~~il~~l~~  214 (215)
                      ...+.+|..+.+...   .+...|++....        +...+++++||||++|+|+..+.+...+++.+++|.++|++
T Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~H~~~~~LId~~G~i~~~~~~~~~~~~i~~~I~~~lk~  159 (160)
T d1wp0a1          81 KEFSPKLVGLTGTREEVDQVARAYRVYYSPGPKDEDEDYIVDHTIIMYLIGPDGEFLDYFGQNKRKGEIAASIATHMRP  159 (160)
T ss_dssp             HTTCTTCEEEECCHHHHHHHHHHTTCCEEECCCCGGGCCCEEECCEEEEECTTSCEEEEEETTCCHHHHHHHHHHHHTT
T ss_pred             hhcCCCcccccCchHHhhHHhhhhheeeecccCCCCCCceEeccceEEEECCCCcEEEEECCCCCHHHHHHHHHHHHhc
Confidence            999999988876543   467777765321        11234458999999999999998776666777888888775

>d2b7ka1 c.47.1.10 (A:111-279) Thioredoxin-like protein Sco1 (YpmQ), soluble domain {Baker's yeast(Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Thioredoxin-like protein Sco1 (YpmQ), soluble domain
species: Baker's yeast(Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.80  E-value=1e-18  Score=129.44  Aligned_cols=140  Identities=14%  Similarity=0.185  Sum_probs=100.0

Q ss_pred             CCeEEeCCCCCeeecCCcCCCcEEEEEEcCCCChhhHHHHHHHHHHHHHHHHc---CcEEEEEeCC----CHHHHHHHHH
Q 028030           75 PSFTLKDQEGRNVSLSKFKGKPVVVYFYPADETPGCTKQACAFRDSYEKFKKA---GAEVIGISGD----DSSSHKAFAK  147 (215)
Q Consensus        75 P~f~l~~~~g~~~~l~~~~gk~~ll~f~~a~~C~~C~~~~~~l~~l~~~~~~~---~v~vv~vs~d----~~~~~~~~~~  147 (215)
                      +||+++|.+|+++++++++||++||+||++.||+.|......+..+...+...   .+.++.++.+    +.+....+..
T Consensus         7 ~dF~l~d~~G~~vsl~~~~GK~vli~f~~t~c~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   86 (169)
T d2b7ka1           7 GPFHLEDMYGNEFTEKNLLGKFSIIYFGFSNCPDICPDELDKLGLWLNTLSSKYGITLQPLFITCDPARDSPAVLKEYLS   86 (169)
T ss_dssp             CCCEEEETTSCEEEGGGGTTSCEEEEEECTTCCSHHHHHHHHHHHHHHHHHHHHCCCCEEEEEESCTTTCCHHHHHHHHT
T ss_pred             CCeEEEeCCCCEECHHHHCCCEEEEEEeccccCCcccchhhhhhhhhhhccccccccceeeeeccccccCchhhhhhhhc
Confidence            58999999999999999999999999994444567777777777776666543   4666666653    3456666666


Q ss_pred             HcCCCeEEEEcCCh---hHHHHhCCCcc---------CCCCCCccEEEEEcCCCcEEEEEeCCCCCCccHHHHHHHHhc
Q 028030          148 KYRLPYTLLSDEGN---KVRKEWGVPAD---------FFGSLPGRQTYILDKNGVVQLIYNNQFQPEKHIDETLKFLQS  214 (215)
Q Consensus       148 ~~~~~~~~~~d~~~---~~~~~~g~~~~---------~~g~~p~~~~~lid~~G~v~~~~~g~~~~~~~~~~il~~l~~  214 (215)
                      ..+..+........   .....+++...         .+...+++++||||++|+|+..+.+..+++..+++|++.|++
T Consensus        87 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~h~~~~fLID~~G~vv~~~~~~~~~~~~~~~I~e~ik~  165 (169)
T d2b7ka1          87 DFHPSILGLTGTFDEVKNACKKYRVYFSTPPNVKPGQDYLVDHSIFFYLMDPEGQFVDALGRNYDEKTGVDKIVEHVKS  165 (169)
T ss_dssp             TSCTTCEEEECCHHHHHHHHHHTTC--------------CTTTCCCEEEECTTSCEEEEECTTCCTTHHHHHHHHHHHH
T ss_pred             cccccccccccchhhhhhhhhhhheeeeecccCCcccCceeeccceEEEECCCCeEEEEECCCCCHHHHHHHHHHHHHH
Confidence            66777766654432   34445554321         122344569999999999999998888888878888888764

>d1nm3a2 c.47.1.10 (A:3-165) N-terminal, Prx domain of Hybrid-Prx5 {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: N-terminal, Prx domain of Hybrid-Prx5
species: Haemophilus influenzae [TaxId: 727]

Probab=99.78  E-value=2.3e-18  Score=128.57  Aligned_cols=144  Identities=24%  Similarity=0.433  Sum_probs=112.6

Q ss_pred             CCCCCCCeEEeCCCC---CeeecCCc-CCCcEEEEEEcCCCChhhHHHHHHHHHHHH-HHHHcCc-EEEEEeCCCHHHHH
Q 028030           70 KGQAPPSFTLKDQEG---RNVSLSKF-KGKPVVVYFYPADETPGCTKQACAFRDSYE-KFKKAGA-EVIGISGDDSSSHK  143 (215)
Q Consensus        70 ~g~~~P~f~l~~~~g---~~~~l~~~-~gk~~ll~f~~a~~C~~C~~~~~~l~~l~~-~~~~~~v-~vv~vs~d~~~~~~  143 (215)
                      .|+++|+|+++...|   +.++++++ +||++||+|+|+.+++.|..++..+..... ....+++ .++.++.+++..++
T Consensus         3 ~Gd~~Pdftl~~~~~~~~~~~slsd~~~gk~VVL~f~P~afTp~Ct~e~~~~~~~~~~~~~~~~~~~vv~~~s~d~~~~~   82 (163)
T d1nm3a2           3 EGKKVPQVTFRTRQGDKWVDVTTSELFDNKTVIVFSLPGAFTPTCSSSHLPRYNELAPVFKKYGVDDILVVSVNDTFVMN   82 (163)
T ss_dssp             TTSBCCCCEEEEEETTEEEEEEHHHHHTTSEEEEEEESCSSCHHHHHTHHHHHHHHHHHHHHTTCCEEEEEESSCHHHHH
T ss_pred             CCCCCCCeEEEEEcCCCceEEEHHHHhCCCeEEEEEEeccccccchhhhhhhhhhcchhhhhhcccceeeeecCCHHHHH
Confidence            699999999987666   57899996 999999999999999999988877665543 4444444 56777888888888


Q ss_pred             HHHHHc-CCCeEEEEcCChhHHHHhCCCccC----CCCCCccEEEEEcCCCcEEEEEeCCCCCC-----ccHHHHHHHHh
Q 028030          144 AFAKKY-RLPYTLLSDEGNKVRKEWGVPADF----FGSLPGRQTYILDKNGVVQLIYNNQFQPE-----KHIDETLKFLQ  213 (215)
Q Consensus       144 ~~~~~~-~~~~~~~~d~~~~~~~~~g~~~~~----~g~~p~~~~~lid~~G~v~~~~~g~~~~~-----~~~~~il~~l~  213 (215)
                      +|.+.. ...++++.|+.+.+.++||+....    .|..+.|.+|||| ||+|++.+.......     ...+++|+.|.
T Consensus        83 a~~~~~~~~~~~llsD~~~~~~~~~g~~~~~~~~g~g~~s~R~~~Iid-dG~I~~~~v~~~~~g~~~~~s~ae~vL~~L~  161 (163)
T d1nm3a2          83 AWKEDEKSENISFIPDGNGEFTEGMGMLVGKEDLGFGKRSWRYSMLVK-NGVVEKMFIEPNEPGDPFKVSDADTMLKYLA  161 (163)
T ss_dssp             HHHHHTTCTTSEEEECTTSHHHHHTTCEEECTTTTCCEEECCEEEEEE-TTEEEEEEECCSCSSCCCSSSSHHHHHHHHC
T ss_pred             HHhhhhccCceeeeccCChHHHHHhhhhccccccccccccceEEEEEe-CCEEEEEEEecCCCCCCccccCHHHHHHHHc
Confidence            887665 456999999999999999986432    2234567899999 999999987643222     36899999886


Q ss_pred             c
Q 028030          214 S  214 (215)
Q Consensus       214 ~  214 (215)
                      .
T Consensus       162 ~  162 (163)
T d1nm3a2         162 P  162 (163)
T ss_dssp             T
T ss_pred             c
Confidence            4

>d1xiya1 c.47.1.10 (A:2-180) 1-Cys peroxiredoxin {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: 1-Cys peroxiredoxin
species: Malaria parasite (Plasmodium falciparum) [TaxId: 5833]

Probab=99.71  E-value=1.2e-16  Score=119.70  Aligned_cols=146  Identities=18%  Similarity=0.371  Sum_probs=115.3

Q ss_pred             CCCCCCCCeEEe----------CCCC-----CeeecCCc-CCCcEEEEEEcCCCChhhH-HHHHHHHHHHHHH-HHcCc-
Q 028030           69 SKGQAPPSFTLK----------DQEG-----RNVSLSKF-KGKPVVVYFYPADETPGCT-KQACAFRDSYEKF-KKAGA-  129 (215)
Q Consensus        69 ~~g~~~P~f~l~----------~~~g-----~~~~l~~~-~gk~~ll~f~~a~~C~~C~-~~~~~l~~l~~~~-~~~~v-  129 (215)
                      +.|+.+|+.++.          +.+|     +.++++++ +||.+||+++|+.+.|.|. .++|.+.+.++++ +++|+ 
T Consensus         1 k~~d~iP~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~d~f~~KkVvl~~vPgAFTp~Cs~~hlp~y~~~~d~f~k~~gvd   80 (179)
T d1xiya1           1 KENDLIPNVKVMIDVRNMNNISDTDGSPNDFTSIDTHELFNNKKILLISLPGAFTPTCSTKMIPGYEEEYDYFIKENNFD   80 (179)
T ss_dssp             CTTCBCCCCEEEEEHHHHTC--------CCEEEEEHHHHSTTCEEEEEECSCTTCHHHHHTHHHHHHHTHHHHHTTSCCS
T ss_pred             CCCCcCCCeEEEEEecccccccccCCCCCCceEeeHHHHhCCCeEEEEEcccccCCccchhhCcchhhhHHHHHHhcCCc
Confidence            368899998864          3344     45677776 9999999999999999996 4899999999998 56787 


Q ss_pred             EEEEEeCCCHHHHHHHHHHcCCC-eEEEEcCChhHHHHhCCCccC----CCCCCccEEEEEcCCCcEEEEEeCCCC----
Q 028030          130 EVIGISGDDSSSHKAFAKKYRLP-YTLLSDEGNKVRKEWGVPADF----FGSLPGRQTYILDKNGVVQLIYNNQFQ----  200 (215)
Q Consensus       130 ~vv~vs~d~~~~~~~~~~~~~~~-~~~~~d~~~~~~~~~g~~~~~----~g~~p~~~~~lid~~G~v~~~~~g~~~----  200 (215)
                      +|+.|++||+..+++|.+.++.+ +.++.|+++++.+++|+..+.    .|...-|..+||| ||+|.+.+.-...    
T Consensus        81 ~I~~iSvnD~fv~~aW~~~~~~~~I~~lsD~~g~f~k~lg~~~d~~~~g~G~Rs~R~a~iid-dg~I~~~~vE~~~~~~~  159 (179)
T d1xiya1          81 DIYCITNNDIYVLKSWFKSMDIKKIKYISDGNSSFTDSMNMLVDKSNFFMGMRPWRFVAIVE-NNILVKMFQEKDKQHNI  159 (179)
T ss_dssp             EEEEEESSCHHHHHHHHHHTTCCSSEEEECTTSHHHHHTTCEEECGGGTCCEEECCEEEEEE-TTEEEEEEECSSCCTTC
T ss_pred             eEEEEecCCHHHHHHHHhhcCcceEEEeeCCchHHHHhhhcccccccCCCeeEEeeEEEEEE-CCEEEEEEEeCCCCCCC
Confidence            68889999999999999999987 589999999999999997432    2222346789998 8999998753211    


Q ss_pred             -----CCccHHHHHHHHhcC
Q 028030          201 -----PEKHIDETLKFLQSS  215 (215)
Q Consensus       201 -----~~~~~~~il~~l~~s  215 (215)
                           .....+.+|+.|++|
T Consensus       160 ~~dp~~vSsae~iL~~L~~~  179 (179)
T d1xiya1         160 QTDPYDISTVNNVKEFLKNN  179 (179)
T ss_dssp             SSCCCSTTSHHHHHHHHHCC
T ss_pred             CCCCcccCCHHHHHHHHhcC
Confidence                 125689999999875

>d1xwaa_ c.47.1.1 (A:) Thioredoxin {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.51  E-value=1.2e-14  Score=101.23  Aligned_cols=80  Identities=25%  Similarity=0.375  Sum_probs=65.9

Q ss_pred             ecCCcCCCcEEEEEEcCCCChhhHHHHHHHHHHHHHHHHcCcEEEEEeCCCHHHHHHHHHHcCCCeEEEEcCChhHHHHh
Q 028030           88 SLSKFKGKPVVVYFYPADETPGCTKQACAFRDSYEKFKKAGAEVIGISGDDSSSHKAFAKKYRLPYTLLSDEGNKVRKEW  167 (215)
Q Consensus        88 ~l~~~~gk~~ll~f~~a~~C~~C~~~~~~l~~l~~~~~~~~v~vv~vs~d~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~  167 (215)
                      .+.+..||++||+|| ++||++|+...|.++++++++++. +.++.|..|                     ....+.+.|
T Consensus        19 ~l~~~~~k~vlv~f~-a~wC~~C~~~~p~~~~l~~~~~~~-~~~~~i~~d---------------------~~~~l~~~~   75 (111)
T d1xwaa_          19 QLTKASGKLVVLDFF-ATWCGPCKMISPKLVELSTQFADN-VVVLKVDVD---------------------ECEDIAMEY   75 (111)
T ss_dssp             HHHHHTTSEEEEEEE-CTTCHHHHHHHHHHHHHHHHTTTT-EEEEEEETT---------------------TCHHHHHHT
T ss_pred             HHHhcCCCEEEEEEE-CCcccCccccchhHHHHhhhcccc-eEEEEEEee---------------------cCcchhhcC
Confidence            344457899999999 999999999999999999998864 777777653                     445677889


Q ss_pred             CCCccCCCCCCccEEEEEcCCCcEEEEEeCC
Q 028030          168 GVPADFFGSLPGRQTYILDKNGVVQLIYNNQ  198 (215)
Q Consensus       168 g~~~~~~g~~p~~~~~lid~~G~v~~~~~g~  198 (215)
                      ++..     +|  +++++ ++|+++.++.|.
T Consensus        76 ~V~~-----~P--t~~~~-~~G~~v~~~~G~   98 (111)
T d1xwaa_          76 NISS-----MP--TFVFL-KNGVKVEEFAGA   98 (111)
T ss_dssp             TCCS-----SS--EEEEE-ETTEEEEEEESC
T ss_pred             CCcc-----cc--EEEEE-ECCEEEEEEeCC
Confidence            9987     99  66666 799999999984

>d1nw2a_ c.47.1.1 (A:) Thioredoxin {Alicyclobacillus acidocaldarius, formerly Bacillus acidocaldarius [TaxId: 405212]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: Alicyclobacillus acidocaldarius, formerly Bacillus acidocaldarius [TaxId: 405212]

Probab=99.44  E-value=2e-13  Score=93.76  Aligned_cols=76  Identities=21%  Similarity=0.282  Sum_probs=65.0

Q ss_pred             CCCcEEEEEEcCCCChhhHHHHHHHHHHHHHHHHcCcEEEEEeCCCHHHHHHHHHHcCCCeEEEEcCChhHHHHhCCCcc
Q 028030           93 KGKPVVVYFYPADETPGCTKQACAFRDSYEKFKKAGAEVIGISGDDSSSHKAFAKKYRLPYTLLSDEGNKVRKEWGVPAD  172 (215)
Q Consensus        93 ~gk~~ll~f~~a~~C~~C~~~~~~l~~l~~~~~~~~v~vv~vs~d~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~g~~~~  172 (215)
                      .+|++||+|| ++||++|+...|.+.++..+++++ +.++.|+.                     |....+...|++.. 
T Consensus        16 ~~k~vvv~F~-a~wC~~C~~~~~~~~~l~~~~~~~-~~~~~vd~---------------------~~~~~~~~~~~V~~-   71 (105)
T d1nw2a_          16 GDKPVLVDFW-AAWCGPCRMMAPVLEEFAEAHADK-VTVAKLNV---------------------DENPETTSQFGIMS-   71 (105)
T ss_dssp             SSSCEEEEEE-CTTCHHHHHHHHHHHHHHHHHTTT-CEEEEEET---------------------TTCHHHHHHTTCCB-
T ss_pred             CCCcEEEEEE-CCCCCCcccccchhhhhhhhcCCc-eEEEEEEC---------------------CCCcccHHHCCcce-
Confidence            4689999999 999999999999999999999864 88888876                     44556778899998 


Q ss_pred             CCCCCCccEEEEEcCCCcEEEEEeCCC
Q 028030          173 FFGSLPGRQTYILDKNGVVQLIYNNQF  199 (215)
Q Consensus       173 ~~g~~p~~~~~lid~~G~v~~~~~g~~  199 (215)
                          +|  +++++ ++|+.+.++.|..
T Consensus        72 ----~P--t~~~~-~~G~~~~~~~G~~   91 (105)
T d1nw2a_          72 ----IP--TLILF-KGGEPVKQLIGYQ   91 (105)
T ss_dssp             ----SS--EEEEE-ETTEEEEEEESCC
T ss_pred             ----ee--EEEEE-ECCEEEEEEECCC
Confidence                99  77777 6899999998853

>d1dbya_ c.47.1.1 (A:) Thioredoxin {Chlamydomonas reinhardtii [TaxId: 3055]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: Chlamydomonas reinhardtii [TaxId: 3055]

Probab=99.44  E-value=4.6e-13  Score=92.25  Aligned_cols=77  Identities=21%  Similarity=0.335  Sum_probs=65.0

Q ss_pred             CCCcEEEEEEcCCCChhhHHHHHHHHHHHHHHHHcCcEEEEEeCCCHHHHHHHHHHcCCCeEEEEcCChhHHHHhCCCcc
Q 028030           93 KGKPVVVYFYPADETPGCTKQACAFRDSYEKFKKAGAEVIGISGDDSSSHKAFAKKYRLPYTLLSDEGNKVRKEWGVPAD  172 (215)
Q Consensus        93 ~gk~~ll~f~~a~~C~~C~~~~~~l~~l~~~~~~~~v~vv~vs~d~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~g~~~~  172 (215)
                      .+|++||+|| ++||++|+...|.+.++.+++.++ +.++.|..                     |....+.+.|++.. 
T Consensus        18 s~kpvlv~F~-a~wC~~C~~~~p~~~~~~~~~~~~-~~~~~vd~---------------------d~~~~l~~~~~V~~-   73 (107)
T d1dbya_          18 SSVPVLVDFW-APWCGPCRIIAPVVDEIAGEYKDK-LKCVKLNT---------------------DESPNVASEYGIRS-   73 (107)
T ss_dssp             CSSCEEEEEE-CTTCHHHHHHHHHHHHHHHHTTTT-CEEEEEET---------------------TTCHHHHHHHTCCS-
T ss_pred             CCCcEEEEEE-CCCCCCccccChHHHHHHHhhccc-ceEEEEec---------------------ccchhHHHHhcccc-
Confidence            3689999999 999999999999999998888764 78887875                     44567888999998 


Q ss_pred             CCCCCCccEEEEEcCCCcEEEEEeCCCC
Q 028030          173 FFGSLPGRQTYILDKNGVVQLIYNNQFQ  200 (215)
Q Consensus       173 ~~g~~p~~~~~lid~~G~v~~~~~g~~~  200 (215)
                          +|  +++++ ++|+.+.++.|..+
T Consensus        74 ----~P--t~~~~-~~G~~v~~~~G~~~   94 (107)
T d1dbya_          74 ----IP--TIMVF-KGGKKCETIIGAVP   94 (107)
T ss_dssp             ----SC--EEEEE-SSSSEEEEEESCCC
T ss_pred             ----eE--EEEEE-ECCeEEEEEeCCCC
Confidence                99  77777 58999999998543

>d1a8la2 c.47.1.2 (A:120-226) Protein disulfide isomerase, PDI {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: PDI-like
domain: Protein disulfide isomerase, PDI
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=99.42  E-value=7.9e-13  Score=90.94  Aligned_cols=93  Identities=14%  Similarity=0.168  Sum_probs=66.4

Q ss_pred             CCcCCCcEEEEEEcCCCChhhHHHHHHHHHHHHHHHHc---CcEEEEEeCCCHHHHHHHHHHcCCCeEEEEcCChhHHHH
Q 028030           90 SKFKGKPVVVYFYPADETPGCTKQACAFRDSYEKFKKA---GAEVIGISGDDSSSHKAFAKKYRLPYTLLSDEGNKVRKE  166 (215)
Q Consensus        90 ~~~~gk~~ll~f~~a~~C~~C~~~~~~l~~l~~~~~~~---~v~vv~vs~d~~~~~~~~~~~~~~~~~~~~d~~~~~~~~  166 (215)
                      .+..++++|++|| ++||++|+...|.+.+++.+....   .+.++.|..                     ++..++++.
T Consensus        11 ~~~~~~v~i~~F~-a~wC~~C~~~~p~~~~la~~~~~~~~~~v~~~~id~---------------------~~~~~l~~~   68 (107)
T d1a8la2          11 RNIDQDVRILVFV-TPTCPYCPLAVRMAHKFAIENTKAGKGKILGDMVEA---------------------IEYPEWADQ   68 (107)
T ss_dssp             TTCCSCEEEEEEE-CSSCTTHHHHHHHHHHHHHHHHHTTCCCEEEEEEEG---------------------GGCHHHHHH
T ss_pred             HhcCCCeEEEEEE-cCccccchhhChhHHhhhhhhhhccCCcEEEEEecc---------------------ccccccccc
Confidence            3444566777899 999999999999999998776543   245555543                     234578889


Q ss_pred             hCCCccCCCCCCccEEEEEcCCCcEEEEEeCCCCCCccHHHHHHHH
Q 028030          167 WGVPADFFGSLPGRQTYILDKNGVVQLIYNNQFQPEKHIDETLKFL  212 (215)
Q Consensus       167 ~g~~~~~~g~~p~~~~~lid~~G~v~~~~~g~~~~~~~~~~il~~l  212 (215)
                      |++.+     +|  ++ ++.++|+++.++.|....+...+.+.++|
T Consensus        69 ~~V~~-----vP--Ti-~i~~~G~~~~~~~G~~~~~~~~~~i~~al  106 (107)
T d1a8la2          69 YNVMA-----VP--KI-VIQVNGEDRVEFEGAYPEKMFLEKLLSAL  106 (107)
T ss_dssp             TTCCS-----SC--EE-EEEETTEEEEEEESCCCHHHHHHHHHHHH
T ss_pred             ccccc-----ce--EE-EEEeCCeEEEEEECCCCHHHHHHHHHHhh
Confidence            99997     99  54 56689999999999655444444444443

>d1r26a_ c.47.1.1 (A:) Thioredoxin {Trypanosoma brucei [TaxId: 5691]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: Trypanosoma brucei [TaxId: 5691]

Probab=99.42  E-value=5.3e-13  Score=93.00  Aligned_cols=88  Identities=14%  Similarity=0.154  Sum_probs=71.1

Q ss_pred             CCCcEEEEEEcCCCChhhHHHHHHHHHHHHHHHHcCcEEEEEeCCCHHHHHHHHHHcCCCeEEEEcCChhHHHHhCCCcc
Q 028030           93 KGKPVVVYFYPADETPGCTKQACAFRDSYEKFKKAGAEVIGISGDDSSSHKAFAKKYRLPYTLLSDEGNKVRKEWGVPAD  172 (215)
Q Consensus        93 ~gk~~ll~f~~a~~C~~C~~~~~~l~~l~~~~~~~~v~vv~vs~d~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~g~~~~  172 (215)
                      .+++++|+|| ++||++|+...|.|.++.++++  ++.++.|+.|                     +..++.+.||+.. 
T Consensus        25 ~~~~vvv~F~-a~wC~~C~~~~p~l~~l~~~~~--~v~~~~vd~d---------------------~~~~l~~~~~V~~-   79 (113)
T d1r26a_          25 EDILTVAWFT-AVWCGPCKTIERPMEKIAYEFP--TVKFAKVDAD---------------------NNSEIVSKCRVLQ-   79 (113)
T ss_dssp             SSSCEEEEEE-CTTCHHHHHTHHHHHHHHHHCT--TSEEEEEETT---------------------TCHHHHHHTTCCS-
T ss_pred             CCCeEEEEEE-CCCCccchhhceeccccccccc--cccccccccc---------------------cchhhHHHccccC-
Confidence            4689999999 9999999999999999999886  6899888764                     4567888999997 


Q ss_pred             CCCCCCccEEEEEcCCCcEEEEEeCCCCCCccHHHHHHHHh
Q 028030          173 FFGSLPGRQTYILDKNGVVQLIYNNQFQPEKHIDETLKFLQ  213 (215)
Q Consensus       173 ~~g~~p~~~~~lid~~G~v~~~~~g~~~~~~~~~~il~~l~  213 (215)
                          +|  +++++ ++|+.+.++.|. .++...+.+.++|+
T Consensus        80 ----~P--t~~~~-~~G~~v~~~~G~-~~~~l~~~l~~~ik  112 (113)
T d1r26a_          80 ----LP--TFIIA-RSGKMLGHVIGA-NPGMLRQKLRDIIK  112 (113)
T ss_dssp             ----SS--EEEEE-ETTEEEEEEESS-CHHHHHHHHHHHHH
T ss_pred             ----CC--EEEEE-ECCEEEEEEeCC-CHHHHHHHHHHHhc
Confidence                99  66655 799999999984 34455555555555

>d1gh2a_ c.47.1.1 (A:) Thioredoxin-like protein, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin-like protein, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.41  E-value=8.2e-13  Score=91.12  Aligned_cols=74  Identities=19%  Similarity=0.208  Sum_probs=62.9

Q ss_pred             CCCcEEEEEEcCCCChhhHHHHHHHHHHHHHHHHcCcEEEEEeCCCHHHHHHHHHHcCCCeEEEEcCChhHHHHhCCCcc
Q 028030           93 KGKPVVVYFYPADETPGCTKQACAFRDSYEKFKKAGAEVIGISGDDSSSHKAFAKKYRLPYTLLSDEGNKVRKEWGVPAD  172 (215)
Q Consensus        93 ~gk~~ll~f~~a~~C~~C~~~~~~l~~l~~~~~~~~v~vv~vs~d~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~g~~~~  172 (215)
                      .+|+++|+|| ++||++|+...|.|.+++++++  ++.++-|..|                     ....+...|++.. 
T Consensus        20 ~~klvvv~F~-a~wC~~Ck~~~p~~~~la~~~~--~~~f~~vd~d---------------------~~~~l~~~~~v~~-   74 (107)
T d1gh2a_          20 GSRLAVVKFT-MRGCGPCLRIAPAFSSMSNKYP--QAVFLEVDVH---------------------QCQGTAATNNISA-   74 (107)
T ss_dssp             TTSCEEEEEE-CSSCHHHHHHHHHHHHHHHHCT--TSEEEEEETT---------------------TSHHHHHHTTCCS-
T ss_pred             CCCEEEEEEE-CCCCCCccccchhhhccccccc--cccccccccc---------------------cchhhhhhcCcee-
Confidence            3689999999 9999999999999999999887  5888888754                     4556778999987 


Q ss_pred             CCCCCCccEEEEEcCCCcEEEEEeCC
Q 028030          173 FFGSLPGRQTYILDKNGVVQLIYNNQ  198 (215)
Q Consensus       173 ~~g~~p~~~~~lid~~G~v~~~~~g~  198 (215)
                          +|  +++++ ++|+.+.++.|.
T Consensus        75 ----~P--t~~~~-~~G~~v~~~~G~   93 (107)
T d1gh2a_          75 ----TP--TFQFF-RNKVRIDQYQGA   93 (107)
T ss_dssp             ----SS--EEEEE-ETTEEEEEEESS
T ss_pred             ----ce--EEEEE-ECCEEEEEEeCC
Confidence                99  66666 899999999994

>d1woua_ c.47.1.16 (A:) Putative 42-9-9 protein (thioredoxin containing protein Txnl5) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Txnl5-like
domain: Putative 42-9-9 protein (thioredoxin containing protein Txnl5)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.41  E-value=1.5e-13  Score=96.68  Aligned_cols=81  Identities=20%  Similarity=0.341  Sum_probs=66.8

Q ss_pred             cCCcCCCcEEEEEEcCC-------CChhhHHHHHHHHHHHHHHHHcCcEEEEEeCCCHHHHHHHHHHcCCCeEEEEcCCh
Q 028030           89 LSKFKGKPVVVYFYPAD-------ETPGCTKQACAFRDSYEKFKKAGAEVIGISGDDSSSHKAFAKKYRLPYTLLSDEGN  161 (215)
Q Consensus        89 l~~~~gk~~ll~f~~a~-------~C~~C~~~~~~l~~l~~~~~~~~v~vv~vs~d~~~~~~~~~~~~~~~~~~~~d~~~  161 (215)
                      +.+.+||+++|+|| |+       ||++|+...|.+.++++++++ ++.++.|.+|+...+              .|.+.
T Consensus        16 l~~~~gk~v~v~F~-a~~~~~g~sWC~pCk~~~P~~~~l~~~~~~-~~~~~~vdv~~~~~~--------------~d~~~   79 (119)
T d1woua_          16 VEQHNGKTIFAYFT-GSKDAGGKSWCPDCVQAEPVVREGLKHISE-GCVFIYCQVGEKPYW--------------KDPNN   79 (119)
T ss_dssp             HHTTTTSEEEEEEE-CCBCTTCCBSCHHHHHHHHHHHHHGGGCCT-TEEEEEEECCCHHHH--------------HCTTC
T ss_pred             HHHcCCCEEEEEEE-ecCCCCCCCCChhHHHHHHHHHHHHHhcCC-ceEEEEEECCCCccc--------------chhhh
Confidence            34557999999999 75       999999999999999988875 499999999876442              46778


Q ss_pred             hHHHHhCCCccCCCCCCccEEEEEcCCCcEE
Q 028030          162 KVRKEWGVPADFFGSLPGRQTYILDKNGVVQ  192 (215)
Q Consensus       162 ~~~~~~g~~~~~~g~~p~~~~~lid~~G~v~  192 (215)
                      .+.+.|++..     +|  ++++++..+++.
T Consensus        80 ~l~~~~~V~~-----iP--T~i~~~~g~~l~  103 (119)
T d1woua_          80 DFRKNLKVTA-----VP--TLLKYGTPQKLV  103 (119)
T ss_dssp             HHHHHHCCCS-----SS--EEEETTSSCEEE
T ss_pred             hHHHhCCeEE-----EE--EEEEEECCeEEe
Confidence            8999999998     99  888887655554

>d1thxa_ c.47.1.1 (A:) Thioredoxin {Anabaena sp., pcc 7120 [TaxId: 1167]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: Anabaena sp., pcc 7120 [TaxId: 1167]

Probab=99.40  E-value=1.2e-12  Score=90.23  Aligned_cols=85  Identities=19%  Similarity=0.305  Sum_probs=68.9

Q ss_pred             CCcEEEEEEcCCCChhhHHHHHHHHHHHHHHHHcCcEEEEEeCCCHHHHHHHHHHcCCCeEEEEcCChhHHHHhCCCccC
Q 028030           94 GKPVVVYFYPADETPGCTKQACAFRDSYEKFKKAGAEVIGISGDDSSSHKAFAKKYRLPYTLLSDEGNKVRKEWGVPADF  173 (215)
Q Consensus        94 gk~~ll~f~~a~~C~~C~~~~~~l~~l~~~~~~~~v~vv~vs~d~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~g~~~~~  173 (215)
                      +|++||.|| ++||++|+...|.+.++.+++++. +.++.|..                     |.+..+...|++..  
T Consensus        20 ~~~vlv~f~-a~wC~~C~~~~~~~~~~~~~~~~~-~~~~~vd~---------------------d~~~~l~~~~~I~~--   74 (108)
T d1thxa_          20 EQPVLVYFW-ASWCGPCQLMSPLINLAANTYSDR-LKVVKLEI---------------------DPNPTTVKKYKVEG--   74 (108)
T ss_dssp             SSCEEEEEE-CTTCTTHHHHHHHHHHHHHHTTTT-CEEEEEES---------------------TTCHHHHHHTTCCS--
T ss_pred             CCcEEEEEE-CCCCCCccccchHHHHHHHhcCCc-ceeceecc---------------------cccHHHHHHhcccC--
Confidence            578999999 999999999999999999988864 88888875                     45567889999997  


Q ss_pred             CCCCCccEEEEEcCCCcEEEEEeCCCCCCccHHHHHHHHh
Q 028030          174 FGSLPGRQTYILDKNGVVQLIYNNQFQPEKHIDETLKFLQ  213 (215)
Q Consensus       174 ~g~~p~~~~~lid~~G~v~~~~~g~~~~~~~~~~il~~l~  213 (215)
                         +|  ++++++ +|+++.++.|..+    .+++.+.|+
T Consensus        75 ---~P--t~~~~~-~g~~v~~~~G~~~----~~~l~~~i~  104 (108)
T d1thxa_          75 ---VP--ALRLVK-GEQILDSTEGVIS----KDKLLSFLD  104 (108)
T ss_dssp             ---SS--EEEEEE-TTEEEEEEESCCC----HHHHHHHHH
T ss_pred             ---CC--EEEEEE-CCEEEEEEeCCCC----HHHHHHHHH
Confidence               99  788775 8999999988543    344555444

>d1fb6a_ c.47.1.1 (A:) Thioredoxin {Spinach (Spinacia oleracea), thioredoxin M [TaxId: 3562]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: Spinach (Spinacia oleracea), thioredoxin M [TaxId: 3562]

Probab=99.39  E-value=9.5e-13  Score=90.10  Aligned_cols=85  Identities=16%  Similarity=0.255  Sum_probs=67.3

Q ss_pred             CCcEEEEEEcCCCChhhHHHHHHHHHHHHHHHHcCcEEEEEeCCCHHHHHHHHHHcCCCeEEEEcCChhHHHHhCCCccC
Q 028030           94 GKPVVVYFYPADETPGCTKQACAFRDSYEKFKKAGAEVIGISGDDSSSHKAFAKKYRLPYTLLSDEGNKVRKEWGVPADF  173 (215)
Q Consensus        94 gk~~ll~f~~a~~C~~C~~~~~~l~~l~~~~~~~~v~vv~vs~d~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~g~~~~~  173 (215)
                      +|++||+|| ++||++|+...|.+.++.+++.++ +.++.|..                     |.+..+...|++..  
T Consensus        17 ~~~vlv~F~-a~wC~~C~~~~~~~~~l~~~~~~~-~~~~~v~~---------------------d~~~~l~~~~~V~~--   71 (104)
T d1fb6a_          17 EVPVMVDFW-APWCGPCKLIAPVIDELAKEYSGK-IAVYKLNT---------------------DEAPGIATQYNIRS--   71 (104)
T ss_dssp             SSCEEEEEE-CTTCHHHHHHHHHHHHHHHHTTTT-CEEEEEET---------------------TTCHHHHHHTTCCS--
T ss_pred             CCcEEEEEE-cCccCCccccCchhHHHHHhhcCc-cceeEEec---------------------ccchhhhhhcceee--
Confidence            578999999 999999999999999999988764 67777765                     44557888999998  


Q ss_pred             CCCCCccEEEEEcCCCcEEEEEeCCCCCCccHHHHHHHHh
Q 028030          174 FGSLPGRQTYILDKNGVVQLIYNNQFQPEKHIDETLKFLQ  213 (215)
Q Consensus       174 ~g~~p~~~~~lid~~G~v~~~~~g~~~~~~~~~~il~~l~  213 (215)
                         +|  +++++ ++|+.+.++.|..+    .+++.+.|+
T Consensus        72 ---~P--t~~~~-~~G~~v~~~~G~~~----~~~l~~~i~  101 (104)
T d1fb6a_          72 ---IP--TVLFF-KNGERKESIIGAVP----KSTLTDSIE  101 (104)
T ss_dssp             ---SS--EEEEE-ETTEEEEEEEECCC----HHHHHHHHH
T ss_pred             ---ee--EEEEE-EcCeEEEEEeCCCC----HHHHHHHHH
Confidence               99  66666 79999999988543    344444443

>d1ep7a_ c.47.1.1 (A:) Thioredoxin {Chlamydomonas reinhardtii [TaxId: 3055]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: Chlamydomonas reinhardtii [TaxId: 3055]

Probab=99.38  E-value=2.1e-12  Score=89.77  Aligned_cols=75  Identities=23%  Similarity=0.253  Sum_probs=64.2

Q ss_pred             CCCcEEEEEEcCCCChhhHHHHHHHHHHHHHHHHcCcEEEEEeCCCHHHHHHHHHHcCCCeEEEEcCChhHHHHhCCCcc
Q 028030           93 KGKPVVVYFYPADETPGCTKQACAFRDSYEKFKKAGAEVIGISGDDSSSHKAFAKKYRLPYTLLSDEGNKVRKEWGVPAD  172 (215)
Q Consensus        93 ~gk~~ll~f~~a~~C~~C~~~~~~l~~l~~~~~~~~v~vv~vs~d~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~g~~~~  172 (215)
                      .+|++||+|| ++||++|+...|.++++++++++ .+.++.|+.|                     ....+.+.|++.. 
T Consensus        23 ~~k~vvv~f~-a~wC~~C~~~~p~~~~l~~~~~~-~v~~~~vd~d---------------------~~~~l~~~~~v~~-   78 (112)
T d1ep7a_          23 EHKPIVVDFT-ATWCGPCKMIAPLFETLSNDYAG-KVIFLKVDVD---------------------AVAAVAEAAGITA-   78 (112)
T ss_dssp             HTCCEEEEEE-CTTCHHHHHHHHHHHHHHHHTTT-TSEEEEEETT---------------------TTHHHHHHHTCCB-
T ss_pred             cCCeEEEEEE-cCCcCCCcccchhhhhhhhcccc-eEEEEEeecc---------------------ccccccccccccC-
Confidence            4789999999 99999999999999999999875 3899988874                     3456788999998 


Q ss_pred             CCCCCCccEEEEEcCCCcEEEEEeCC
Q 028030          173 FFGSLPGRQTYILDKNGVVQLIYNNQ  198 (215)
Q Consensus       173 ~~g~~p~~~~~lid~~G~v~~~~~g~  198 (215)
                          +|  +++++ ++|+.+.++.|.
T Consensus        79 ----~P--t~~~~-~~G~~v~~~~G~   97 (112)
T d1ep7a_          79 ----MP--TFHVY-KDGVKADDLVGA   97 (112)
T ss_dssp             ----SS--EEEEE-ETTEEEEEEESC
T ss_pred             ----CC--EEEEE-ECCEEEEEEeCc
Confidence                99  66666 799999999983

>d1xfla_ c.47.1.1 (A:) Thioredoxin {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=99.38  E-value=2.1e-12  Score=89.98  Aligned_cols=74  Identities=26%  Similarity=0.302  Sum_probs=62.3

Q ss_pred             CCCcEEEEEEcCCCChhhHHHHHHHHHHHHHHHHcCcEEEEEeCCCHHHHHHHHHHcCCCeEEEEcCChhHHHHhCCCcc
Q 028030           93 KGKPVVVYFYPADETPGCTKQACAFRDSYEKFKKAGAEVIGISGDDSSSHKAFAKKYRLPYTLLSDEGNKVRKEWGVPAD  172 (215)
Q Consensus        93 ~gk~~ll~f~~a~~C~~C~~~~~~l~~l~~~~~~~~v~vv~vs~d~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~g~~~~  172 (215)
                      .++++||+|| ++||++|+...|.+.++.++++  ++.++.|..                     |....+.+.|++.. 
T Consensus        27 ~~~~vlv~F~-a~wC~~C~~~~p~~~~l~~~~~--~~~~~~vd~---------------------~~~~~l~~~~~V~~-   81 (114)
T d1xfla_          27 SKTLVVVDFT-ASWCGPCRFIAPFFADLAKKLP--NVLFLKVDT---------------------DELKSVASDWAIQA-   81 (114)
T ss_dssp             TTCEEEEEEE-CTTCHHHHHHHHHHHHHHHHCS--SEEEEEEET---------------------TTSHHHHHHTTCCS-
T ss_pred             cCCeEEEEEE-cCCCCCccccccchhhhccccc--ccceeEEEe---------------------eeceeeccccceee-
Confidence            3689999999 9999999999999999988876  577777765                     34557888999987 


Q ss_pred             CCCCCCccEEEEEcCCCcEEEEEeCC
Q 028030          173 FFGSLPGRQTYILDKNGVVQLIYNNQ  198 (215)
Q Consensus       173 ~~g~~p~~~~~lid~~G~v~~~~~g~  198 (215)
                          +|  +++++ ++|+++.++.|.
T Consensus        82 ----~P--t~~~~-~~G~~v~~~~G~  100 (114)
T d1xfla_          82 ----MP--TFMFL-KEGKILDKVVGA  100 (114)
T ss_dssp             ----SS--EEEEE-ETTEEEEEEESC
T ss_pred             ----eE--EEEEE-ECCEEEEEEeCc
Confidence                99  77766 799999999883

>d2trxa_ c.47.1.1 (A:) Thioredoxin {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: Escherichia coli [TaxId: 562]

Probab=99.37  E-value=1.8e-12  Score=89.29  Aligned_cols=85  Identities=18%  Similarity=0.320  Sum_probs=67.0

Q ss_pred             CCcEEEEEEcCCCChhhHHHHHHHHHHHHHHHHcCcEEEEEeCCCHHHHHHHHHHcCCCeEEEEcCChhHHHHhCCCccC
Q 028030           94 GKPVVVYFYPADETPGCTKQACAFRDSYEKFKKAGAEVIGISGDDSSSHKAFAKKYRLPYTLLSDEGNKVRKEWGVPADF  173 (215)
Q Consensus        94 gk~~ll~f~~a~~C~~C~~~~~~l~~l~~~~~~~~v~vv~vs~d~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~g~~~~~  173 (215)
                      +|++||+|| ++||++|+...+.+.+++.++..+ +.++.+..                     |.+..+...|++..  
T Consensus        20 ~~~v~v~F~-a~wC~~C~~~~~~~~~~a~~~~~~-~~~~~vd~---------------------d~~~~l~~~~~v~~--   74 (108)
T d2trxa_          20 DGAILVDFW-AEWCGPCKMIAPILDEIADEYQGK-LTVAKLNI---------------------DQNPGTAPKYGIRG--   74 (108)
T ss_dssp             SSEEEEEEE-CTTCHHHHHHHHHHHHHHHHTTTT-EEEEEEET---------------------TTCTTHHHHTTCCS--
T ss_pred             CCcEEEEEE-CCCCCCccccCcHHHHHHHHhhcc-eeeeeccc---------------------cchhhHHHHhCCCc--
Confidence            689999999 999999999999999998877654 77777764                     45667889999998  


Q ss_pred             CCCCCccEEEEEcCCCcEEEEEeCCCCCCccHHHHHHHHh
Q 028030          174 FGSLPGRQTYILDKNGVVQLIYNNQFQPEKHIDETLKFLQ  213 (215)
Q Consensus       174 ~g~~p~~~~~lid~~G~v~~~~~g~~~~~~~~~~il~~l~  213 (215)
                         +|  +++++ ++|+.+.++.|..+    .+++.+.|+
T Consensus        75 ---~P--T~~~~-~~G~~v~~~~G~~~----~~~l~~~i~  104 (108)
T d2trxa_          75 ---IP--TLLLF-KNGEVAATKVGALS----KGQLKEFLD  104 (108)
T ss_dssp             ---SS--EEEEE-ETTEEEEEEESCCC----HHHHHHHHH
T ss_pred             ---EE--EEEEE-ECCEEEEEEeCCCC----HHHHHHHHH
Confidence               99  66666 69999999998543    344444443

>d2ifqa1 c.47.1.1 (A:1-105) Thioredoxin {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.37  E-value=2.9e-12  Score=87.91  Aligned_cols=74  Identities=23%  Similarity=0.248  Sum_probs=61.7

Q ss_pred             CCCcEEEEEEcCCCChhhHHHHHHHHHHHHHHHHcCcEEEEEeCCCHHHHHHHHHHcCCCeEEEEcCChhHHHHhCCCcc
Q 028030           93 KGKPVVVYFYPADETPGCTKQACAFRDSYEKFKKAGAEVIGISGDDSSSHKAFAKKYRLPYTLLSDEGNKVRKEWGVPAD  172 (215)
Q Consensus        93 ~gk~~ll~f~~a~~C~~C~~~~~~l~~l~~~~~~~~v~vv~vs~d~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~g~~~~  172 (215)
                      .+|++||+|| ++||++|+...|.+.++.++++  ++.++-|..                     |....+...|++.. 
T Consensus        19 ~~k~vvv~F~-a~wC~~C~~~~p~~~~l~~~~~--~~~~~~vd~---------------------d~~~~~~~~~~V~~-   73 (105)
T d2ifqa1          19 GDKLVVVDFS-ATWCGPCKMIKPFFHSLSEKYS--NVIFLEVDV---------------------DDCQDVASECEVKC-   73 (105)
T ss_dssp             TTSCEEEEEE-CTTCHHHHHHHHHHHHHHHHCT--TSEEEEEET---------------------TTCHHHHHHTTCCB-
T ss_pred             CCCEEEEEEE-cCCccchhhhhhhhhhhccccc--cceeeeccc---------------------ccCHhHHHHcCceE-
Confidence            4689999999 9999999999999999988876  466777765                     34456778899987 


Q ss_pred             CCCCCCccEEEEEcCCCcEEEEEeCC
Q 028030          173 FFGSLPGRQTYILDKNGVVQLIYNNQ  198 (215)
Q Consensus       173 ~~g~~p~~~~~lid~~G~v~~~~~g~  198 (215)
                          +|  +++++ ++|+.+.++.|.
T Consensus        74 ----~P--t~~~~-~~G~~v~~~~G~   92 (105)
T d2ifqa1          74 ----MP--TFQFF-KKGQKVGEFSGA   92 (105)
T ss_dssp             ----SS--EEEEE-ETTEEEEEEESC
T ss_pred             ----EE--EEEEE-ECCEEEEEEeCC
Confidence                99  77777 799999999983

>d1f9ma_ c.47.1.1 (A:) Thioredoxin {Spinach (Spinacia oleracea), thioredoxin F [TaxId: 3562]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: Spinach (Spinacia oleracea), thioredoxin F [TaxId: 3562]

Probab=99.37  E-value=3.2e-12  Score=88.76  Aligned_cols=74  Identities=22%  Similarity=0.323  Sum_probs=62.7

Q ss_pred             CCcEEEEEEcCCCChhhHHHHHHHHHHHHHHHHcCcEEEEEeCCCHHHHHHHHHHcCCCeEEEEcCChhHHHHhCCCccC
Q 028030           94 GKPVVVYFYPADETPGCTKQACAFRDSYEKFKKAGAEVIGISGDDSSSHKAFAKKYRLPYTLLSDEGNKVRKEWGVPADF  173 (215)
Q Consensus        94 gk~~ll~f~~a~~C~~C~~~~~~l~~l~~~~~~~~v~vv~vs~d~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~g~~~~~  173 (215)
                      +|+++|+|| ++||++|+...|.+.++.++++  ++.++.|..|.                    ...++.+.|++..  
T Consensus        25 ~k~vvv~f~-a~wC~~C~~~~p~~~~l~~~~~--~v~~~~vd~~~--------------------~~~~l~~~~~V~~--   79 (112)
T d1f9ma_          25 DKPVVLDMF-TQWCGPCKAMAPKYEKLAEEYL--DVIFLKLDCNQ--------------------ENKTLAKELGIRV--   79 (112)
T ss_dssp             TSCEEEEEE-CTTCHHHHHHHHHHHHHHHHCT--TSEEEEEECSS--------------------TTHHHHHHHCCSS--
T ss_pred             CCEEEEEEE-cCCCcchHHHHHHHhhhccccc--cceeecccccc--------------------cchhhHhheeecc--
Confidence            479999999 9999999999999999999886  57888886532                    2457888999997  


Q ss_pred             CCCCCccEEEEEcCCCcEEEEEeCC
Q 028030          174 FGSLPGRQTYILDKNGVVQLIYNNQ  198 (215)
Q Consensus       174 ~g~~p~~~~~lid~~G~v~~~~~g~  198 (215)
                         +|  +++++ ++|+++.++.|.
T Consensus        80 ---~P--t~~~~-k~G~~v~~~~G~   98 (112)
T d1f9ma_          80 ---VP--TFKIL-KENSVVGEVTGA   98 (112)
T ss_dssp             ---SS--EEEEE-ETTEEEEEEESS
T ss_pred             ---CC--EEEEE-ECCEEEEEEeCC
Confidence               99  77777 799999999994

>d2fwha1 c.47.1.1 (A:428-544) Thiol:disulfide interchange protein DsbD, C-terminal domain (DsbD-gamma) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thiol:disulfide interchange protein DsbD, C-terminal domain (DsbD-gamma)
species: Escherichia coli [TaxId: 562]

Probab=99.36  E-value=7.7e-14  Score=97.68  Aligned_cols=98  Identities=19%  Similarity=0.205  Sum_probs=67.0

Q ss_pred             ecCCcCCCcEEEEEEcCCCChhhHHHHHHHHHHHHHHHH-cCcEEEEEeCCCHHHHHHHHHHcCCCeEEEEcCChhHHHH
Q 028030           88 SLSKFKGKPVVVYFYPADETPGCTKQACAFRDSYEKFKK-AGAEVIGISGDDSSSHKAFAKKYRLPYTLLSDEGNKVRKE  166 (215)
Q Consensus        88 ~l~~~~gk~~ll~f~~a~~C~~C~~~~~~l~~l~~~~~~-~~v~vv~vs~d~~~~~~~~~~~~~~~~~~~~d~~~~~~~~  166 (215)
                      .+.+.+||++||+|| ++||++|+...|.+.++.+..+. .++.++.+..+...                 +...++.+.
T Consensus        16 ~l~~~~gK~vlv~F~-a~wC~~C~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~-----------------~~~~~l~~~   77 (117)
T d2fwha1          16 ALVEAKGKPVMLDLY-ADWCVACKEFEKYTFSDPQVQKALADTVLLQANVTAND-----------------AQDVALLKH   77 (117)
T ss_dssp             HHHHHTTSCEEEEEE-CTTCHHHHHHHHHTTTSHHHHHHTTTSEEEEEECTTCC-----------------HHHHHHHHH
T ss_pred             HHHHcCCCeEEEEEe-cccCCcccccchhHHhHHHHHHhccceEEEecccccch-----------------hHHHHHHhh
Confidence            455568999999999 99999999998887444332222 24666666543221                 123456778


Q ss_pred             hCCCccCCCCCCccEEEEEcCCCcEEE--EEeCCCCCCccHHHHHHHHhc
Q 028030          167 WGVPADFFGSLPGRQTYILDKNGVVQL--IYNNQFQPEKHIDETLKFLQS  214 (215)
Q Consensus       167 ~g~~~~~~g~~p~~~~~lid~~G~v~~--~~~g~~~~~~~~~~il~~l~~  214 (215)
                      |++.+     +|  +++++|++|+++.  +..|.    ...+++++.|++
T Consensus        78 ~~v~~-----~P--t~~~~~~~G~~~~~~~~~G~----~~~~~~~~~l~~  116 (117)
T d2fwha1          78 LNVLG-----LP--TILFFDGQGQEHPQARVTGF----MDAETFSAHLRD  116 (117)
T ss_dssp             TTCCS-----SS--EEEEECTTSCBCGGGCBCSC----CCHHHHHHHHHH
T ss_pred             hehhh-----ce--EEEEEeCCCcEEeccccccc----CCHHHHHHHHhc
Confidence            88887     89  9999999999864  34553    234567776654

>d1z6na1 c.47.1.1 (A:1-166) Hypothetical protein PA1234 {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Hypothetical protein PA1234
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=99.35  E-value=3.9e-16  Score=116.54  Aligned_cols=115  Identities=14%  Similarity=0.131  Sum_probs=79.2

Q ss_pred             ecCCcCCCcEEEEEEcCCCChhhHHHHHHHHHHHHHHHHcCcEEEEEeCCCH-HHHHHHHHHcCCCeE--EEEcCChhHH
Q 028030           88 SLSKFKGKPVVVYFYPADETPGCTKQACAFRDSYEKFKKAGAEVIGISGDDS-SSHKAFAKKYRLPYT--LLSDEGNKVR  164 (215)
Q Consensus        88 ~l~~~~gk~~ll~f~~a~~C~~C~~~~~~l~~l~~~~~~~~v~vv~vs~d~~-~~~~~~~~~~~~~~~--~~~d~~~~~~  164 (215)
                      .+.+++|++++|+|| ++||++|+.++|.|.++++++++  +.+..|+.|.. +.+++|..+.+..++  ++.|.+....
T Consensus        48 ~l~~~~~~~~~l~~~-~tWC~~C~~~~P~l~~l~~~~~~--~~~~~i~~d~~~~~~~~~~~~~~~~~p~~~~~d~~~~~~  124 (166)
T d1z6na1          48 RLQRIERRYRLLVAG-EMWCPDCQINLAALDFAQRLQPN--IELAIISKGRAEDDLRQRLALERIAIPLVLVLDEEFNLL  124 (166)
T ss_dssp             HHHTCCSCEEEEEEC-CTTCHHHHHHHHHHHHHHHHCTT--EEEEEECHHHHHHHTTTTTTCSSCCSSEEEEECTTCCEE
T ss_pred             HHHHhcCCeEEEEEE-eCcCccHHHHHHHHHHHHHHCCC--CcEEEEECccCHHHHHHHHHhccccccceeecCccchhc
Confidence            355678899999999 99999999999999999998874  66666776543 455566555555443  3344443322


Q ss_pred             HHhCCCccCCCCCCccEEEEEcCCCcEEEEEeCCCCCCccHHHHHHHHhcC
Q 028030          165 KEWGVPADFFGSLPGRQTYILDKNGVVQLIYNNQFQPEKHIDETLKFLQSS  215 (215)
Q Consensus       165 ~~~g~~~~~~g~~p~~~~~lid~~G~v~~~~~g~~~~~~~~~~il~~l~~s  215 (215)
                      ..|+       ..|  ++++++++|.+.....|.. .+..++++++.|+.+
T Consensus       125 ~~~~-------~~P--~~~~~~~~~~~~~~~~G~~-~~~~~~eil~ii~g~  165 (166)
T d1z6na1         125 GRFV-------ERP--QAVLDGGPQALAAYKAGDY-LEHAIGDVLAIIEGA  165 (166)
T ss_dssp             EEEE-------SSC--HHHHHHCHHHHHHHHTTTT-HHHHHHHHHHHHHHC
T ss_pred             cccc-------ccc--hhheecccceeeeeccccc-cHHHHHHHHHHhcCC
Confidence            2221       256  7778888887776666754 356678888888753

>d1ti3a_ c.47.1.1 (A:) Thioredoxin {European aspen (Populus tremula), thioredoxin H [TaxId: 113636]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: European aspen (Populus tremula), thioredoxin H [TaxId: 113636]

Probab=99.34  E-value=5.3e-12  Score=87.74  Aligned_cols=74  Identities=30%  Similarity=0.389  Sum_probs=62.0

Q ss_pred             CCCcEEEEEEcCCCChhhHHHHHHHHHHHHHHHHcCcEEEEEeCCCHHHHHHHHHHcCCCeEEEEcCChhHHHHhCCCcc
Q 028030           93 KGKPVVVYFYPADETPGCTKQACAFRDSYEKFKKAGAEVIGISGDDSSSHKAFAKKYRLPYTLLSDEGNKVRKEWGVPAD  172 (215)
Q Consensus        93 ~gk~~ll~f~~a~~C~~C~~~~~~l~~l~~~~~~~~v~vv~vs~d~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~g~~~~  172 (215)
                      .+|++||+|| ++||++|+...|.|.++.+++.  ++.++.|..                     |....+...|++.. 
T Consensus        25 ~~k~vvv~F~-a~wC~~C~~~~p~~~~~~~~~~--~~~~~~vd~---------------------d~~~~l~~~~~I~~-   79 (113)
T d1ti3a_          25 SQKLIVVDFT-ASWCPPCKMIAPIFAELAKKFP--NVTFLKVDV---------------------DELKAVAEEWNVEA-   79 (113)
T ss_dssp             SSSEEEEEEE-CSSCHHHHHHHHHHHHHHHHCS--SEEEEEEET---------------------TTCHHHHHHHHCSS-
T ss_pred             CCCEEEEEEE-cCccccchhhhhhhhhhhccCC--CceEEeeee---------------------eccccccccCeecc-
Confidence            4689999999 9999999999999999998875  467777765                     34567888999998 


Q ss_pred             CCCCCCccEEEEEcCCCcEEEEEeCC
Q 028030          173 FFGSLPGRQTYILDKNGVVQLIYNNQ  198 (215)
Q Consensus       173 ~~g~~p~~~~~lid~~G~v~~~~~g~  198 (215)
                          +|  +++++ ++|+.+.++.|.
T Consensus        80 ----~P--t~~~~-k~G~~v~~~~G~   98 (113)
T d1ti3a_          80 ----MP--TFIFL-KDGKLVDKTVGA   98 (113)
T ss_dssp             ----TT--EEEEE-ETTEEEEEEECC
T ss_pred             ----cc--eEEEE-ECCEEEEEEcCC
Confidence                99  76666 699999999883

>d1syra_ c.47.1.1 (A:) Thioredoxin {Malarial parasite (Plasmodium falciparum) [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: Malarial parasite (Plasmodium falciparum) [TaxId: 5833]

Probab=99.29  E-value=1.8e-11  Score=83.45  Aligned_cols=84  Identities=17%  Similarity=0.283  Sum_probs=66.1

Q ss_pred             CCCcEEEEEEcCCCChhhHHHHHHHHHHHHHHHHcCcEEEEEeCCCHHHHHHHHHHcCCCeEEEEcCChhHHHHhCCCcc
Q 028030           93 KGKPVVVYFYPADETPGCTKQACAFRDSYEKFKKAGAEVIGISGDDSSSHKAFAKKYRLPYTLLSDEGNKVRKEWGVPAD  172 (215)
Q Consensus        93 ~gk~~ll~f~~a~~C~~C~~~~~~l~~l~~~~~~~~v~vv~vs~d~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~g~~~~  172 (215)
                      .++++||.|| ++||++|+...|.+.++.++++  ++.++.+..|                     ...++.+.|++.. 
T Consensus        17 ~~~~vvv~F~-a~wC~~C~~~~~~~~~l~~~~~--~~~~~~vd~d---------------------~~~~~~~~~~V~~-   71 (103)
T d1syra_          17 QNELVIVDFF-AEWCGPCKRIAPFYEECSKTYT--KMVFIKVDVD---------------------EVSEVTEKENITS-   71 (103)
T ss_dssp             HCSEEEEEEE-CTTCHHHHHHHHHHHHHHHHCT--TSEEEEEETT---------------------TTHHHHHHTTCCS-
T ss_pred             CCCcEEEEEe-CCcccCcccccccchhhhhccc--ceEEEeeccc---------------------cCcceeeeeeeec-
Confidence            4688999999 9999999999999999999886  4677777753                     4456788999997 


Q ss_pred             CCCCCCccEEEEEcCCCcEEEEEeCCCCCCccHHHHHHHHh
Q 028030          173 FFGSLPGRQTYILDKNGVVQLIYNNQFQPEKHIDETLKFLQ  213 (215)
Q Consensus       173 ~~g~~p~~~~~lid~~G~v~~~~~g~~~~~~~~~~il~~l~  213 (215)
                          +|  +++++ ++|+.+.++.|.  ..   +++.+.|+
T Consensus        72 ----~P--t~i~~-k~G~~v~~~~G~--~~---~~l~~~i~  100 (103)
T d1syra_          72 ----MP--TFKVY-KNGSSVDTLLGA--ND---SALKQLIE  100 (103)
T ss_dssp             ----SS--EEEEE-ETTEEEEEEESC--CH---HHHHHHHH
T ss_pred             ----ce--EEEEE-ECCEEEEEEeCc--CH---HHHHHHHH
Confidence                99  66666 799999999883  22   44555554

>d2es7a1 c.47.1.20 (A:7-125) Hydrogenase-1 operon protein HyaE {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: HyaE-like
domain: Hydrogenase-1 operon protein HyaE
species: Salmonella typhimurium [TaxId: 90371]

Probab=99.24  E-value=1.1e-12  Score=92.14  Aligned_cols=81  Identities=10%  Similarity=0.167  Sum_probs=58.1

Q ss_pred             CCCcEEEEEEcCCCChhhHHHHHHHHHHHHHHHHcCcEEEEEeCCCHHHHHHHHHHcCCCeEEEEcCChhHHHHhCCCcc
Q 028030           93 KGKPVVVYFYPADETPGCTKQACAFRDSYEKFKKAGAEVIGISGDDSSSHKAFAKKYRLPYTLLSDEGNKVRKEWGVPAD  172 (215)
Q Consensus        93 ~gk~~ll~f~~a~~C~~C~~~~~~l~~l~~~~~~~~v~vv~vs~d~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~g~~~~  172 (215)
                      .+++++|.|| +.||++|+...|.|.++.++|++..+.++.|..                     |.+.++.+.||+.. 
T Consensus        29 ~~~~vll~f~-a~wCp~C~~~~pvl~eL~~~~~~~~~~~~~Vd~---------------------d~~~~l~~~~~V~~-   85 (119)
T d2es7a1          29 GDGVILLSSD-PRRTPEVSDNPVMIAELLREFPQFDWQVAVADL---------------------EQSEAIGDRFNVRR-   85 (119)
T ss_dssp             CSEEEEECCC-SCC----CCHHHHHHHHHHTCTTSCCEEEEECH---------------------HHHHHHHHTTTCCS-
T ss_pred             CCcEEEEeec-CCCCccHHHHHHHHHHHHHhcCCCceEEEEEEC---------------------CCCHHHHHhcCcCc-
Confidence            3568888999 999999999999999999999875577766753                     33467888999997 


Q ss_pred             CCCCCCccEEEEEcCCCcEEEEEeCCCCCCc
Q 028030          173 FFGSLPGRQTYILDKNGVVQLIYNNQFQPEK  203 (215)
Q Consensus       173 ~~g~~p~~~~~lid~~G~v~~~~~g~~~~~~  203 (215)
                          +|  +++++ ++|+.+..+.|..+.+.
T Consensus        86 ----~P--t~~~~-~~G~~v~~~~G~~~~~~  109 (119)
T d2es7a1          86 ----FP--ATLVF-TDGKLRGALSGIHPWAE  109 (119)
T ss_dssp             ----SS--EEEEE-SCC----CEESCCCHHH
T ss_pred             ----ce--EEEEE-EcCeEEEEeeCCCCHHH
Confidence                99  77777 79999999999654433

>d1fo5a_ c.47.1.1 (A:) MJ0307, thioredoxin/glutaredoxin-like protein {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: MJ0307, thioredoxin/glutaredoxin-like protein
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=99.22  E-value=4.1e-12  Score=83.65  Aligned_cols=67  Identities=19%  Similarity=0.276  Sum_probs=53.1

Q ss_pred             CCcEEEEEEcCCCChhhHHHHHHHHHHHHHHHHcCcEEEEEeCCCHHHHHHHHHHcCCCeEEEEcCChhHHHHhCCCccC
Q 028030           94 GKPVVVYFYPADETPGCTKQACAFRDSYEKFKKAGAEVIGISGDDSSSHKAFAKKYRLPYTLLSDEGNKVRKEWGVPADF  173 (215)
Q Consensus        94 gk~~ll~f~~a~~C~~C~~~~~~l~~l~~~~~~~~v~vv~vs~d~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~g~~~~~  173 (215)
                      +|+.|++|| ++||++|+...|.+.++.+++.+. +.++.+..                     |.+.++++.||+.+  
T Consensus         2 ~kv~v~~F~-a~wC~~C~~~~p~~~~~~~~~~~~-~~~~~~~~---------------------d~~~~la~~~~V~~--   56 (85)
T d1fo5a_           2 SKVKIELFT-SPMCPHCPAAKRVVEEVANEMPDA-VEVEYINV---------------------MENPQKAMEYGIMA--   56 (85)
T ss_dssp             CCEEEEEEE-CCCSSCCCTHHHHHHHHHHHCSSS-EEEEEEES---------------------SSSCCTTTSTTTCC--
T ss_pred             CceEEEEEE-CCCCcChHhhhhhccccccccccc-cccccccc---------------------cccccccccCCceE--
Confidence            588999999 999999999999999998877643 55555543                     45667888999997  


Q ss_pred             CCCCCccEEEEEcCCCcE
Q 028030          174 FGSLPGRQTYILDKNGVV  191 (215)
Q Consensus       174 ~g~~p~~~~~lid~~G~v  191 (215)
                         +|  + ++++++|++
T Consensus        57 ---~P--t-~~i~~~g~~   68 (85)
T d1fo5a_          57 ---VP--T-IVINGDVEF   68 (85)
T ss_dssp             ---SS--E-EEETTEEEC
T ss_pred             ---ee--E-EEEECCcEE
Confidence               99  4 567888864

>d1qgva_ c.47.1.8 (A:) spliceosomal protein U5-15Kd {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: spliceosomal protein U5-15Kd
domain: spliceosomal protein U5-15Kd
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.19  E-value=5.4e-11  Score=85.34  Aligned_cols=74  Identities=19%  Similarity=0.119  Sum_probs=61.7

Q ss_pred             CCCcEEEEEEcCCCChhhHHHHHHHHHHHHHHHHcCcEEEEEeCCCHHHHHHHHHHcCCCeEEEEcCChhHHHHhCCCcc
Q 028030           93 KGKPVVVYFYPADETPGCTKQACAFRDSYEKFKKAGAEVIGISGDDSSSHKAFAKKYRLPYTLLSDEGNKVRKEWGVPAD  172 (215)
Q Consensus        93 ~gk~~ll~f~~a~~C~~C~~~~~~l~~l~~~~~~~~v~vv~vs~d~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~g~~~~  172 (215)
                      .+|++||.|| +.||++|+...|.|.++++++++. +.++.|.+                     |+..++.+.|++.. 
T Consensus        21 ~~k~vvv~F~-a~wC~~C~~~~p~l~~la~~~~~~-v~~~~VDv---------------------d~~~~la~~~~I~~-   76 (137)
T d1qgva_          21 EDRVVVIRFG-HDWDPTCMKMDEVLYSIAEKVKNF-AVIYLVDI---------------------TEVPDFNKMYELYD-   76 (137)
T ss_dssp             SSSEEEEEEE-CTTSHHHHHHHHHHHHHHHHHTTT-EEEEEEET---------------------TTCCTTTTSSCSCS-
T ss_pred             CCCEEEEEEE-CCCCccchhcChHHHHHHHHhhcc-ceEEEeec---------------------cccchhhhhcCeee-
Confidence            3689999999 999999999999999999999864 78888876                     44567889999998 


Q ss_pred             CCCCCCccEEEEEcCCCcEEEEEeC
Q 028030          173 FFGSLPGRQTYILDKNGVVQLIYNN  197 (215)
Q Consensus       173 ~~g~~p~~~~~lid~~G~v~~~~~g  197 (215)
                          +|  +++++ ++|+.+....|
T Consensus        77 ----~P--T~~~f-~~g~~i~~~~g   94 (137)
T d1qgva_          77 ----PC--TVMFF-FRNKHIMIDLG   94 (137)
T ss_dssp             ----SC--EEEEE-ETTEEEEEECC
T ss_pred             ----EE--EEEEE-eCCcEEEEEec
Confidence                99  77777 68887766555

>d2hfda1 c.47.1.20 (A:1-132) Hydrogenase-1 operon protein HyaE {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: HyaE-like
domain: Hydrogenase-1 operon protein HyaE
species: Escherichia coli [TaxId: 562]

Probab=99.19  E-value=1.3e-12  Score=93.36  Aligned_cols=79  Identities=14%  Similarity=0.180  Sum_probs=65.3

Q ss_pred             CCcEEEEEEcCCCChhhHHHHHHHHHHHHHHHHcCcEEEEEeCCCHHHHHHHHHHcCCCeEEEEcCChhHHHHhCCCccC
Q 028030           94 GKPVVVYFYPADETPGCTKQACAFRDSYEKFKKAGAEVIGISGDDSSSHKAFAKKYRLPYTLLSDEGNKVRKEWGVPADF  173 (215)
Q Consensus        94 gk~~ll~f~~a~~C~~C~~~~~~l~~l~~~~~~~~v~vv~vs~d~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~g~~~~~  173 (215)
                      ++++||.|| +.||++|+...|.|.++.++++++.+.+..|..                     |.+.++.+.|++..  
T Consensus        36 ~~vVll~f~-a~wCp~C~~~~pvl~ela~~~~~~~~~~a~Vd~---------------------d~~~~la~~~~V~~--   91 (132)
T d2hfda1          36 DGVVLLSSD-PKRTPEVSDNPVMIGELLREFPDYTWQVAIADL---------------------EQSEAIGDRFGVFR--   91 (132)
T ss_dssp             EEEEEECSC-CSCCSSSSCCTHHHHHHHTTCTTSCEEEEEECH---------------------HHHHHHHHHHTCCS--
T ss_pred             CcEEEEEee-CCCChhHHHHHHHHHHHHHHccCCcceeEEEEe---------------------cCCHHHHHhhccCc--
Confidence            478899999 999999999999999999999876666666654                     33467899999998  


Q ss_pred             CCCCCccEEEEEcCCCcEEEEEeCCCCCC
Q 028030          174 FGSLPGRQTYILDKNGVVQLIYNNQFQPE  202 (215)
Q Consensus       174 ~g~~p~~~~~lid~~G~v~~~~~g~~~~~  202 (215)
                         +|  +++++ ++|+.+..+.|..+.+
T Consensus        92 ---~P--T~~~~-~~G~~v~~~~G~~~~~  114 (132)
T d2hfda1          92 ---FP--ATLVF-TGGNYRGVLNGIHPWA  114 (132)
T ss_dssp             ---CC--EEEEE-ETTEEEEEECCCSCHH
T ss_pred             ---ce--eEEEE-EcCcEeeeecCCCCHH
Confidence               99  77777 8999999999965433

>d1nhoa_ c.47.1.1 (A:) MTH807, thioredoxin/glutaredoxin-like protein {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: MTH807, thioredoxin/glutaredoxin-like protein
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=99.18  E-value=2e-11  Score=80.34  Aligned_cols=73  Identities=15%  Similarity=0.176  Sum_probs=55.4

Q ss_pred             cEEEEEEcCCCChhhHHHHHHHHHHHHHHHHcCcEEEEEeCCCHHHHHHHHHHcCCCeEEEEcCChhHHHHhCCCccCCC
Q 028030           96 PVVVYFYPADETPGCTKQACAFRDSYEKFKKAGAEVIGISGDDSSSHKAFAKKYRLPYTLLSDEGNKVRKEWGVPADFFG  175 (215)
Q Consensus        96 ~~ll~f~~a~~C~~C~~~~~~l~~l~~~~~~~~v~vv~vs~d~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~g~~~~~~g  175 (215)
                      +.|+.|| ++||++|+...|.++++.+++.++ +.++.|+.                     |++.++..+||+..    
T Consensus         3 v~v~~F~-a~wC~~C~~~~p~~~~l~~~~~~~-v~~~~vd~---------------------d~~~~l~~~~~V~~----   55 (85)
T d1nhoa_           3 VNIEVFT-SPTCPYCPMAIEVVDEAKKEFGDK-IDVEKIDI---------------------MVDREKAIEYGLMA----   55 (85)
T ss_dssp             CCEEEES-CSSSCCSTTHHHHHHHHHHHHCSS-CCEEEECT---------------------TTCGGGGGGTCSSC----
T ss_pred             EEEEEEE-CCCCcchHHHHHHHhhhccccccc-cccccccc---------------------ccchhhHHhcCceE----
Confidence            3466688 999999999999999999999763 88888875                     45678899999998    


Q ss_pred             CCCccEEEEEcCCCcEEEEEeCCCCCCc
Q 028030          176 SLPGRQTYILDKNGVVQLIYNNQFQPEK  203 (215)
Q Consensus       176 ~~p~~~~~lid~~G~v~~~~~g~~~~~~  203 (215)
                       +|  + +++|.+|+    +.|..+.+.
T Consensus        56 -~P--t-~~~~~~~~----~~G~~~~~~   75 (85)
T d1nhoa_          56 -VP--A-IAINGVVR----FVGAPSREE   75 (85)
T ss_dssp             -SS--E-EEETTTEE----EECSSCCHH
T ss_pred             -eC--E-EEECCcEE----EEcCCCHHH
Confidence             99  5 45655543    456544333

>d2b5ea4 c.47.1.2 (A:23-141) Protein disulfide isomerase, PDI {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: PDI-like
domain: Protein disulfide isomerase, PDI
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.15  E-value=1e-10  Score=81.72  Aligned_cols=88  Identities=19%  Similarity=0.317  Sum_probs=67.6

Q ss_pred             CCCcEEEEEEcCCCChhhHHHHHHHHHHHHHHHHcCcEEEEEeCCCHHHHHHHHHHcCCCeEEEEcCChhHHHHhCCCcc
Q 028030           93 KGKPVVVYFYPADETPGCTKQACAFRDSYEKFKKAGAEVIGISGDDSSSHKAFAKKYRLPYTLLSDEGNKVRKEWGVPAD  172 (215)
Q Consensus        93 ~gk~~ll~f~~a~~C~~C~~~~~~l~~l~~~~~~~~v~vv~vs~d~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~g~~~~  172 (215)
                      .++.+||.|| ++||++|+...+.+.++.+.+++.++.|..|+.                     |.+..+...|++.. 
T Consensus        26 ~~~~~lV~fy-a~wC~~C~~~~~~~~~la~~~~~~~v~~~~vd~---------------------~~~~~l~~~~~v~~-   82 (119)
T d2b5ea4          26 SHDLVLAEFF-APWCGHCKNMAPEYVKAAETLVEKNITLAQIDC---------------------TENQDLCMEHNIPG-   82 (119)
T ss_dssp             TCSEEEEEEE-CTTCHHHHHHHHHHHHHHHHTTTTTCEEEEEET---------------------TTCHHHHHHTTCCS-
T ss_pred             cCCeEEEEEE-CCccCcccccchhhhhhhhhhcccceeeeeeec---------------------cchHHHHHHhcccc-
Confidence            4578999999 999999999999999999998776788888876                     34567888899987 


Q ss_pred             CCCCCCccEEEEEcCCCcEEEE--EeCCCCCCccHHHHHHHHhc
Q 028030          173 FFGSLPGRQTYILDKNGVVQLI--YNNQFQPEKHIDETLKFLQS  214 (215)
Q Consensus       173 ~~g~~p~~~~~lid~~G~v~~~--~~g~~~~~~~~~~il~~l~~  214 (215)
                          +|  +++++ ++|+....  +.|.    ...+++++.|++
T Consensus        83 ----~P--ti~~f-~~g~~~~~~~y~g~----~~~~~l~~fi~k  115 (119)
T d2b5ea4          83 ----FP--SLKIF-KNSDVNNSIDYEGP----RTAEAIVQFMIK  115 (119)
T ss_dssp             ----SS--EEEEE-ETTCTTCEEECCSC----CSHHHHHHHHHH
T ss_pred             ----CC--eEEEE-ECCEEeeeEEecCC----CCHHHHHHHHHH
Confidence                99  78877 66655433  4453    345667666653

>d1zmaa1 c.47.1.1 (A:1-115) Bacterocin transport accessory protein Bta {Streptococcus pneumoniae [TaxId: 1313]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Bacterocin transport accessory protein Bta
species: Streptococcus pneumoniae [TaxId: 1313]

Probab=99.10  E-value=1.7e-10  Score=80.12  Aligned_cols=80  Identities=16%  Similarity=0.339  Sum_probs=58.3

Q ss_pred             CCCcEEEEEEcCCCChhhHHHHHHHHHHHHHHHHcCcEEEEEeCCCHHHHHHHHHHcCCCeEEEEcCChhHHHHhCCCcc
Q 028030           93 KGKPVVVYFYPADETPGCTKQACAFRDSYEKFKKAGAEVIGISGDDSSSHKAFAKKYRLPYTLLSDEGNKVRKEWGVPAD  172 (215)
Q Consensus        93 ~gk~~ll~f~~a~~C~~C~~~~~~l~~l~~~~~~~~v~vv~vs~d~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~g~~~~  172 (215)
                      .++.++|+|| ++||++|+...|.|.++..+++.   .+..+.++.....               +....+...|++.. 
T Consensus        25 ~~~~~~v~f~-~~~C~~C~~~~p~l~~~~~~~~~---~v~~v~~~~~~~~---------------~~~~~~~~~~~V~~-   84 (115)
T d1zmaa1          25 KKETATFFIG-RKTCPYCRKFAGTLSGVVAETKA---HIYFINSEEPSQL---------------NDLQAFRSRYGIPT-   84 (115)
T ss_dssp             TTCCEEEEEE-CTTCHHHHHHHHHHHHHHHHHCC---CCEEEETTCGGGH---------------HHHHHHHHHHTCCS-
T ss_pred             cCCCEEEEEc-CCCCccHHHHHHHHHHHHHHhhh---hhhhheeeccccc---------------cccccccccccccc-
Confidence            4788999999 99999999999999999887753   3444444432110               11234566778886 


Q ss_pred             CCCCCCccEEEEEcCCCcEEEEEeCCC
Q 028030          173 FFGSLPGRQTYILDKNGVVQLIYNNQF  199 (215)
Q Consensus       173 ~~g~~p~~~~~lid~~G~v~~~~~g~~  199 (215)
                          +|  +++++ ++|+++.++.|..
T Consensus        85 ----~P--Tli~~-~~gk~~~~~~G~~  104 (115)
T d1zmaa1          85 ----VP--GFVHI-TDGQINVRCDSSM  104 (115)
T ss_dssp             ----SC--EEEEE-ETTEEEEECCTTC
T ss_pred             ----cc--EEEEE-ECCEEEEEEcCCC
Confidence                89  77777 5999999998854

>d1hyua4 c.47.1.2 (A:103-198) Alkyl hydroperoxide reductase subunit F (AhpF), N-terminal domain {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: PDI-like
domain: Alkyl hydroperoxide reductase subunit F (AhpF), N-terminal domain
species: Salmonella typhimurium [TaxId: 90371]

Probab=99.08  E-value=4.2e-10  Score=75.62  Aligned_cols=84  Identities=14%  Similarity=0.145  Sum_probs=64.4

Q ss_pred             CcCCCcEEEEEEcCCCChhhHHHHHHHHHHHHHHHHcCcEEEEEeCCCHHHHHHHHHHcCCCeEEEEcCChhHHHHhCCC
Q 028030           91 KFKGKPVVVYFYPADETPGCTKQACAFRDSYEKFKKAGAEVIGISGDDSSSHKAFAKKYRLPYTLLSDEGNKVRKEWGVP  170 (215)
Q Consensus        91 ~~~gk~~ll~f~~a~~C~~C~~~~~~l~~l~~~~~~~~v~vv~vs~d~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~g~~  170 (215)
                      ++.|.+.+++|+ ++||++|+...|.++++..++.  ++.+..|..                     |.+.++...||+.
T Consensus        12 ~l~~~~~i~~F~-s~~C~~C~~~~p~~~~~a~~~~--~i~~~~vd~---------------------~~~~~l~~~~~I~   67 (96)
T d1hyua4          12 DIDGDFEFETYY-SLSCHNCPDVVQALNLMAVLNP--RIKHTAIDG---------------------GTFQNEITERNVM   67 (96)
T ss_dssp             HCCSCEEEEEEE-CTTCSSHHHHHHHHHHHHHHCT--TEEEEEEET---------------------TTCHHHHHHTTCC
T ss_pred             hcCCCeEEEEEE-CCCCcchHHHHHHHHHHHHhCC--ceEEEEEec---------------------ccchHHHhhcccc
Confidence            345778899999 9999999999999999987655  477777765                     4456788899999


Q ss_pred             ccCCCCCCccEEEEEcCCCcEEEEEeCCCCCCccHHHHHHHHhc
Q 028030          171 ADFFGSLPGRQTYILDKNGVVQLIYNNQFQPEKHIDETLKFLQS  214 (215)
Q Consensus       171 ~~~~g~~p~~~~~lid~~G~v~~~~~g~~~~~~~~~~il~~l~~  214 (215)
                      .     +|  +++ +  +|+.+  +.|.    ...+++++.|++
T Consensus        68 ~-----vP--t~~-~--ng~~~--~~G~----~~~~~l~~~les   95 (96)
T d1hyua4          68 G-----VP--AVF-V--NGKEF--GQGR----MTLTEIVAKVDT   95 (96)
T ss_dssp             S-----SS--EEE-E--TTEEE--EESC----CCHHHHHHHHCC
T ss_pred             c-----cc--EEE-E--CCEEE--EecC----CCHHHHHHHHhC
Confidence            7     99  654 4  78776  4453    346888888764

>d1sena_ c.47.1.1 (A:) Thioredoxin-like protein p19, TLP19 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin-like protein p19, TLP19
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.01  E-value=7.9e-11  Score=84.03  Aligned_cols=79  Identities=20%  Similarity=0.183  Sum_probs=51.3

Q ss_pred             cCCCcEEEEEEcCCCChhhHHHHHHHHHHHHHHHHcCcEEEEEeCCCHHHHHHHHHHcCCCeEEEEcCChhHHHHhCCCc
Q 028030           92 FKGKPVVVYFYPADETPGCTKQACAFRDSYEKFKKAGAEVIGISGDDSSSHKAFAKKYRLPYTLLSDEGNKVRKEWGVPA  171 (215)
Q Consensus        92 ~~gk~~ll~f~~a~~C~~C~~~~~~l~~l~~~~~~~~v~vv~vs~d~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~g~~~  171 (215)
                      -.||+++|+|| ++||++|+...+.+.+..+..+. +..+|.|.+|..+                   .......+.-  
T Consensus        23 ~~~Kpvlv~F~-a~wC~~C~~~~~~~~~~~~~~~~-~~~fv~v~vd~~~-------------------~~~~~~~~~~--   79 (135)
T d1sena_          23 ASGLPLMVIIH-KSWCGACKALKPKFAESTEISEL-SHNFVMVNLEDEE-------------------EPKDEDFSPD--   79 (135)
T ss_dssp             HHTCCEEEEEE-CTTCHHHHHHHHHHHTCHHHHHH-HTTSEEEEEEGGG-------------------SCSCGGGCTT--
T ss_pred             HcCCcEEEEEE-ecCCCCceecchhhhhhHHHHHh-cCCcEEEeCCCCc-------------------CHHHHHHHhh--
Confidence            36899999999 99999999999999876544332 2344444443221                   1111111111  


Q ss_pred             cCCCCCCccEEEEEcCCCcEEEEEeC
Q 028030          172 DFFGSLPGRQTYILDKNGVVQLIYNN  197 (215)
Q Consensus       172 ~~~g~~p~~~~~lid~~G~v~~~~~g  197 (215)
                        .+.+|  +++++|++|+++....|
T Consensus        80 --~~~~P--t~~~~d~~G~~~~~~~g  101 (135)
T d1sena_          80 --GGYIP--RILFLDPSGKVHPEIIN  101 (135)
T ss_dssp             --CSCSS--EEEEECTTSCBCTTCCC
T ss_pred             --cccce--eEEEECCCCeEEEEecC
Confidence              12378  99999999998866555

>d1meka_ c.47.1.2 (A:) Protein disulfide isomerase, PDI {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: PDI-like
domain: Protein disulfide isomerase, PDI
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.97  E-value=2.5e-10  Score=79.61  Aligned_cols=88  Identities=22%  Similarity=0.398  Sum_probs=65.3

Q ss_pred             CCCcEEEEEEcCCCChhhHHHHHHHHHHHHHHHHcC--cEEEEEeCCCHHHHHHHHHHcCCCeEEEEcCChhHHHHhCCC
Q 028030           93 KGKPVVVYFYPADETPGCTKQACAFRDSYEKFKKAG--AEVIGISGDDSSSHKAFAKKYRLPYTLLSDEGNKVRKEWGVP  170 (215)
Q Consensus        93 ~gk~~ll~f~~a~~C~~C~~~~~~l~~l~~~~~~~~--v~vv~vs~d~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~g~~  170 (215)
                      .+|.+||.|| ++||++|+...|.+.++.+++++.+  +.++.|..                     |....+...|++.
T Consensus        23 ~~k~vlV~Fy-a~wC~~C~~~~p~~~~~~~~~~~~~~~v~~~~vd~---------------------~~~~~l~~~~~i~   80 (120)
T d1meka_          23 AHKYLLVEFY-APWCGHCKALAPEYAKAAGKLKAEGSEIRLAKVDA---------------------TEESDLAQQYGVR   80 (120)
T ss_dssp             HCSEEEEEEE-CSSCSTTSTTHHHHHHHHHTTTTTCCCCBCEEEET---------------------TTCCSSHHHHTCC
T ss_pred             cCCcEEEEEE-CCCcCCccccchhhhhhcccccccccceeeecccc---------------------ccchhHHHHhCCc
Confidence            4689999999 9999999999999999999887653  55555554                     3456788899999


Q ss_pred             ccCCCCCCccEEEEEcCCCcEE--EEEeCCCCCCccHHHHHHHHhc
Q 028030          171 ADFFGSLPGRQTYILDKNGVVQ--LIYNNQFQPEKHIDETLKFLQS  214 (215)
Q Consensus       171 ~~~~g~~p~~~~~lid~~G~v~--~~~~g~~~~~~~~~~il~~l~~  214 (215)
                      +     +|  +++++ ++|+..  ..+.|.    ...+++++.|++
T Consensus        81 ~-----~P--t~~~~-~~G~~~~~~~~~g~----~~~~~l~~fi~~  114 (120)
T d1meka_          81 G-----YP--TIKFF-RNGDTASPKEYTAG----READDIVNWLKK  114 (120)
T ss_dssp             S-----SS--EEEEE-ESSCSSSCEECCCC----SSHHHHHHHHHT
T ss_pred             c-----CC--eEEEE-ECCeEeeeEEecCC----CCHHHHHHHHHH
Confidence            7     99  77777 455433  334553    346777777765

>d2b5ea1 c.47.1.2 (A:365-504) Protein disulfide isomerase, PDI {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: PDI-like
domain: Protein disulfide isomerase, PDI
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.95  E-value=6.8e-10  Score=79.58  Aligned_cols=87  Identities=17%  Similarity=0.321  Sum_probs=61.3

Q ss_pred             CCcEEEEEEcCCCChhhHHHHHHHHHHHHHHHHcCcEEEEEeCCCHHHHHHHHHHcCCCeEEEEcCChhHHHHhCCCccC
Q 028030           94 GKPVVVYFYPADETPGCTKQACAFRDSYEKFKKAGAEVIGISGDDSSSHKAFAKKYRLPYTLLSDEGNKVRKEWGVPADF  173 (215)
Q Consensus        94 gk~~ll~f~~a~~C~~C~~~~~~l~~l~~~~~~~~v~vv~vs~d~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~g~~~~~  173 (215)
                      +|.+||.|| ++||++|+...|.+.++++.+++.+..+..+.+                     |.+..+...|++..  
T Consensus        30 ~k~vlV~F~-a~wC~~C~~~~p~~~~la~~~~~~~~~v~~~~~---------------------d~~~~~~~~~~v~~--   85 (140)
T d2b5ea1          30 KKDVLVLYY-APWCGHCKRLAPTYQELADTYANATSDVLIAKL---------------------DHTENDVRGVVIEG--   85 (140)
T ss_dssp             TCCEEEEEE-CTTCHHHHHHHHHHHHHHHHHHHHCSSCEEEEE---------------------EGGGCCCSSCCCSS--
T ss_pred             CCCEEEEEE-eccCcccchhHHHHHHHHHHHhccccceEEEee---------------------eccchhcccccccc--
Confidence            678999999 999999999999999999999876444433332                     33344566788887  


Q ss_pred             CCCCCccEEEEEcCCCcEEEE--EeCCCCCCccHHHHHHHHhc
Q 028030          174 FGSLPGRQTYILDKNGVVQLI--YNNQFQPEKHIDETLKFLQS  214 (215)
Q Consensus       174 ~g~~p~~~~~lid~~G~v~~~--~~g~~~~~~~~~~il~~l~~  214 (215)
                         +|  +++++. +|+....  +.|.    ...+++++.|++
T Consensus        86 ---~P--tl~~f~-~g~~~~~~~y~G~----~t~~~l~~fi~~  118 (140)
T d2b5ea1          86 ---YP--TIVLYP-GGKKSESVVYQGS----RSLDSLFDFIKE  118 (140)
T ss_dssp             ---SS--EEEEEC-CTTSCCCCBCCSC----CCHHHHHHHHHH
T ss_pred             ---CC--eEEEEE-CCEEcceeEeCCC----CCHHHHHHHHHH
Confidence               99  777774 6655433  3342    345667766653

>d2dlxa1 c.47.1.24 (A:1-147) UBX domain-containing protein 7 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: UAS domain
domain: UBX domain-containing protein 7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.94  E-value=3.3e-09  Score=76.69  Aligned_cols=93  Identities=12%  Similarity=0.171  Sum_probs=65.6

Q ss_pred             cCCCcEEEEEEcCCCChhhHHHHHHH---HHHHHHHHHcCcEEEEEeCCCHHHHHHHHHHcCCCeEEEEcCChhHHHHhC
Q 028030           92 FKGKPVVVYFYPADETPGCTKQACAF---RDSYEKFKKAGAEVIGISGDDSSSHKAFAKKYRLPYTLLSDEGNKVRKEWG  168 (215)
Q Consensus        92 ~~gk~~ll~f~~a~~C~~C~~~~~~l---~~l~~~~~~~~v~vv~vs~d~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~g  168 (215)
                      -.+|++||+|+ ++||++|+..-+.+   .++.+.+.+ ++.++.|+.++++.                   ..+.+.|+
T Consensus        40 ~~~K~llV~~~-~~~C~~C~~m~~~v~~d~~V~~~l~~-~fV~~~v~~~~~e~-------------------~~~~~~y~   98 (147)
T d2dlxa1          40 MQNKWLMINIQ-NVQDFACQCLNRDVWSNEAVKNIIRE-HFIFWQVYHDSEEG-------------------QRYIQFYK   98 (147)
T ss_dssp             HHTCEEEEEEE-CSCTTTHHHHHHHTTTCHHHHHHHHH-TEEEEEEESSSHHH-------------------HHHHHHHT
T ss_pred             HcCCcEEEEEe-cCCCCchHHHHHhccCCHHHHHHHhh-heeEeeecccchhh-------------------hhhhhhee
Confidence            35899999999 99999999766644   334333443 58888888877653                   45667788


Q ss_pred             CCccCCCCCCccEEEEEcC-CCcEEEEEeCCCCCCccHHHHHHHHh
Q 028030          169 VPADFFGSLPGRQTYILDK-NGVVQLIYNNQFQPEKHIDETLKFLQ  213 (215)
Q Consensus       169 ~~~~~~g~~p~~~~~lid~-~G~v~~~~~g~~~~~~~~~~il~~l~  213 (215)
                      +..     +|  ++++||+ +|+++..+.+ .+.++-++.+.+.|+
T Consensus        99 v~~-----~P--ti~~idp~~ge~v~~~~~-~~~~~fl~~L~~fl~  136 (147)
T d2dlxa1          99 LGD-----FP--YVSILDPRTGQKLVEWHQ-LDVSSFLDQVTGFLG  136 (147)
T ss_dssp             CCS-----SS--EEEEECTTTCCCCEEESS-CCHHHHHHHHHHHHH
T ss_pred             cCc-----ee--EEEEEeCCCCeEecccCC-CCHHHHHHHHHHHHh
Confidence            876     89  9999997 5888876654 444454555555554

>d2c0ga2 c.47.1.7 (A:1024-1145) Windbeutel, N-terminal domain {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: ERP29 N domain-like
domain: Windbeutel, N-terminal domain
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=98.77  E-value=1.9e-08  Score=70.11  Aligned_cols=96  Identities=16%  Similarity=0.175  Sum_probs=65.1

Q ss_pred             CCCcEEEEEEcCCCChhhHHHHHHHHHHHHHHHHc--CcEEEEEeCCCHHHHHHHHHHcCCCeEEEEcCChhHHHHhCCC
Q 028030           93 KGKPVVVYFYPADETPGCTKQACAFRDSYEKFKKA--GAEVIGISGDDSSSHKAFAKKYRLPYTLLSDEGNKVRKEWGVP  170 (215)
Q Consensus        93 ~gk~~ll~f~~a~~C~~C~~~~~~l~~l~~~~~~~--~v~vv~vs~d~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~g~~  170 (215)
                      +.|.+||.|| ++||++|+.  |.+.++++++.+.  .+.+.-|..++...                +.+.++...|++.
T Consensus        18 ~~~~~lV~Fy-a~wC~~ck~--p~f~kla~~~~~~~~~v~ia~Vd~~~~~~----------------~~n~~l~~~~~i~   78 (122)
T d2c0ga2          18 RFPYSVVKFD-IASPYGEKH--EAFTAFSKSAHKATKDLLIATVGVKDYGE----------------LENKALGDRYKVD   78 (122)
T ss_dssp             TSSEEEEEEE-ESSCCSHHH--HHHHHHHHHHHHHCSSEEEEEEEECSSTT----------------CTTHHHHHHTTCC
T ss_pred             cCCcEEEEEE-CCCCCcccC--HHHHHHHHHHHHhCCCeEEEecccccccc----------------ccCHHHHHHhhcc
Confidence            3588999999 999999994  8999999888653  35555566543221                2456888899885


Q ss_pred             ccCCCCCCccEEEEEcCCCcEEEEEeCCCCCCccHHHHHHHHhc
Q 028030          171 ADFFGSLPGRQTYILDKNGVVQLIYNNQFQPEKHIDETLKFLQS  214 (215)
Q Consensus       171 ~~~~g~~p~~~~~lid~~G~v~~~~~g~~~~~~~~~~il~~l~~  214 (215)
                      ..   .+|  +++++.+++.....+..  ..+...+++++.|++
T Consensus        79 ~~---~~P--Ti~~f~~g~~~~~~~~~--~g~rt~~~l~~fv~~  115 (122)
T d2c0ga2          79 DK---NFP--SIFLFKGNADEYVQLPS--HVDVTLDNLKAFVSA  115 (122)
T ss_dssp             TT---SCC--EEEEESSSSSSEEECCT--TSCCCHHHHHHHHHH
T ss_pred             cC---CCC--cEEEEeCCccccccccc--CCCCCHHHHHHHHHH
Confidence            21   188  88888665544333322  234567888887764

>d2djja1 c.47.1.2 (A:6-121) Protein disulfide isomerase, PDI {Fungi (Humicola insolens) [TaxId: 34413]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: PDI-like
domain: Protein disulfide isomerase, PDI
species: Fungi (Humicola insolens) [TaxId: 34413]

Probab=98.72  E-value=8.6e-09  Score=71.03  Aligned_cols=88  Identities=16%  Similarity=0.283  Sum_probs=57.0

Q ss_pred             CCCcEEEEEEcCCCChhhHHHHHHHHHHHHHHHHcCcE-EEEEeCCCHHHHHHHHHHcCCCeEEEEcCChhHHHHhCCCc
Q 028030           93 KGKPVVVYFYPADETPGCTKQACAFRDSYEKFKKAGAE-VIGISGDDSSSHKAFAKKYRLPYTLLSDEGNKVRKEWGVPA  171 (215)
Q Consensus        93 ~gk~~ll~f~~a~~C~~C~~~~~~l~~l~~~~~~~~v~-vv~vs~d~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~g~~~  171 (215)
                      .+|.+||.|| ++||++|+...|.+.++++++...... ++.+                     ..+........+++.+
T Consensus        19 ~~k~vlV~fy-a~wC~~Ck~~~p~~~~la~~~~~~~~~~~~~~---------------------~~~~~~~~~~~~~v~~   76 (116)
T d2djja1          19 DTKDVLIEFY-APWCGHCKALAPKYEELGALYAKSEFKDRVVI---------------------AKVDATANDVPDEIQG   76 (116)
T ss_dssp             TTSCEEEEEE-CSSCTTHHHHHHHHHHHHHHHTTSSCTTSSEE---------------------EEEETTTSCCSSCCSS
T ss_pred             CCCCEEEEEE-ecccccccccchHHHHHHHHHhcccccceeEE---------------------EecccchhhhcccccC
Confidence            3689999999 999999999999999999999865221 1111                     1112223334567776


Q ss_pred             cCCCCCCccEEEEEcCCCcEE--EEEeCCCCCCccHHHHHHHHhc
Q 028030          172 DFFGSLPGRQTYILDKNGVVQ--LIYNNQFQPEKHIDETLKFLQS  214 (215)
Q Consensus       172 ~~~g~~p~~~~~lid~~G~v~--~~~~g~~~~~~~~~~il~~l~~  214 (215)
                           +|  +++++ ++|+..  ..+.|    ....+++++.|++
T Consensus        77 -----~P--ti~~f-~~g~~~~~~~~~g----~~~~~~l~~fi~~  109 (116)
T d2djja1          77 -----FP--TIKLY-PAGAKGQPVTYSG----SRTVEDLIKFIAE  109 (116)
T ss_dssp             -----SS--EEEEE-CSSCTTSCCCCCC----CSCHHHHHHHHHH
T ss_pred             -----CC--EEEEE-ECCccCceEEecC----CCCHHHHHHHHHH
Confidence                 89  77777 444321  12333    2456778877764

>d1a8ya1 c.47.1.3 (A:3-126) Calsequestrin {Rabbit (Oryctolagus cuniculus) [TaxId: 9986]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Calsequestrin
domain: Calsequestrin
species: Rabbit (Oryctolagus cuniculus) [TaxId: 9986]

Probab=98.65  E-value=3.2e-08  Score=69.10  Aligned_cols=89  Identities=13%  Similarity=0.236  Sum_probs=56.9

Q ss_pred             CCCcEEEEEEcCCCChhhHHHHHHHHH-------HHHHHHHcCcEEEEEeCCCHHHHHHHHHHcCCCeEEEEcCChhHHH
Q 028030           93 KGKPVVVYFYPADETPGCTKQACAFRD-------SYEKFKKAGAEVIGISGDDSSSHKAFAKKYRLPYTLLSDEGNKVRK  165 (215)
Q Consensus        93 ~gk~~ll~f~~a~~C~~C~~~~~~l~~-------l~~~~~~~~v~vv~vs~d~~~~~~~~~~~~~~~~~~~~d~~~~~~~  165 (215)
                      +.+.++|.|| ++||+.| ...+....       .+..+.+.++.+..|+.                     +.+.++..
T Consensus        27 ~~~~~~V~Fy-apwC~~~-~~~~~~~~~~~~~~~~a~~~~~~~v~~a~Vd~---------------------~~~~~l~~   83 (124)
T d1a8ya1          27 KYEVLALLYH-EPPEDDK-ASQRQFEMEELILELAAQVLEDKGVGFGLVDS---------------------EKDAAVAK   83 (124)
T ss_dssp             HCSEEEEEEE-CCCCSSH-HHHHHHHHHHHHHHHHHHHTGGGTEEEEEEET---------------------TTSHHHHH
T ss_pred             hCCeEEEEEE-CCCccch-hhhhHHHHHHHHHHHHHHHhccCCeEEEEEEe---------------------ecccchhh
Confidence            4578999999 9999854 34444333       33333444577777764                     45567888


Q ss_pred             HhCCCccCCCCCCccEEEEEcCCCcEEEEEeCCCCCCccHHHHHHHHh
Q 028030          166 EWGVPADFFGSLPGRQTYILDKNGVVQLIYNNQFQPEKHIDETLKFLQ  213 (215)
Q Consensus       166 ~~g~~~~~~g~~p~~~~~lid~~G~v~~~~~g~~~~~~~~~~il~~l~  213 (215)
                      .|++.+     +|  +++++. +|+++ .+.|..+.+..++-+++.++
T Consensus        84 ~~~I~~-----yP--Ti~~f~-~g~~~-~y~G~r~~~~l~~fi~~~l~  122 (124)
T d1a8ya1          84 KLGLTE-----ED--SIYVFK-EDEVI-EYDGEFSADTLVEFLLDVLE  122 (124)
T ss_dssp             TTTCCS-----TT--CEEEEE-SSSEE-ECCSCCSHHHHHHHHHHHHS
T ss_pred             cccccc-----CC--cEEEec-cCccE-EeeCCCCHHHHHHHHHHhcC
Confidence            999998     99  777775 67776 46665444444444444443

>d2trcp_ c.47.1.6 (P:) Phosducin {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Phosducin
domain: Phosducin
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.24  E-value=8.5e-07  Score=67.72  Aligned_cols=72  Identities=15%  Similarity=0.273  Sum_probs=56.7

Q ss_pred             CCcEEEEEEcCCCChhhHHHHHHHHHHHHHHHHcCcEEEEEeCCCHHHHHHHHHHcCCCeEEEEcCChhHHHHhCCCccC
Q 028030           94 GKPVVVYFYPADETPGCTKQACAFRDSYEKFKKAGAEVIGISGDDSSSHKAFAKKYRLPYTLLSDEGNKVRKEWGVPADF  173 (215)
Q Consensus        94 gk~~ll~f~~a~~C~~C~~~~~~l~~l~~~~~~~~v~vv~vs~d~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~g~~~~~  173 (215)
                      +.+|||.|| ++||+.|+...+.|.+|+.+|+  .+.|+-|..+..                      .+...|++..  
T Consensus       120 ~~~Vvvhfy-~~~~~~C~~~~~~l~~lA~~~~--~vkF~ki~~~~~----------------------~~~~~~~i~~--  172 (217)
T d2trcp_         120 VTTIVVNIY-EDGVRGCDALNSSLECLAAEYP--MVKFCKIRASNT----------------------GAGDRFSSDV--  172 (217)
T ss_dssp             TCEEEEEEE-CTTSTTHHHHHHHHHHHHTTCT--TSEEEEEEHHHH----------------------TCSTTSCGGG--
T ss_pred             CCeEEEEEE-cCCCCChhhhhhhHHHHhhhcc--cceEEEEccccc----------------------hhHHhCCCCC--
Confidence            457999999 9999999999999999999997  488888854211                      1234577776  


Q ss_pred             CCCCCccEEEEEcCCCcEEEEEeCC
Q 028030          174 FGSLPGRQTYILDKNGVVQLIYNNQ  198 (215)
Q Consensus       174 ~g~~p~~~~~lid~~G~v~~~~~g~  198 (215)
                         +|  +++++ ++|+++..+.|.
T Consensus       173 ---lP--tl~~y-k~G~~v~~~vg~  191 (217)
T d2trcp_         173 ---LP--TLLVY-KGGELISNFISV  191 (217)
T ss_dssp             ---CS--EEEEE-ETTEEEEEETTG
T ss_pred             ---CC--eEEEE-ECCEEEEEEECc
Confidence               89  66666 899999998873

>d1wjka_ c.47.1.1 (A:) Thioredoxin-like structure containing protein C330018D20Rik {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin-like structure containing protein C330018D20Rik
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.17  E-value=4.9e-07  Score=60.59  Aligned_cols=64  Identities=19%  Similarity=0.367  Sum_probs=44.1

Q ss_pred             CCCcEEEEEEcCCCChhhHHHHHHHHHHHHHHHHcCcEEEEEeCCCHHHHHHHHHHcCCCeEEEEcCChhHHHHhCCCcc
Q 028030           93 KGKPVVVYFYPADETPGCTKQACAFRDSYEKFKKAGAEVIGISGDDSSSHKAFAKKYRLPYTLLSDEGNKVRKEWGVPAD  172 (215)
Q Consensus        93 ~gk~~ll~f~~a~~C~~C~~~~~~l~~l~~~~~~~~v~vv~vs~d~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~g~~~~  172 (215)
                      ..-++|+.|| +.||++|....+.|.++..+|.   ++++-+..                     |.+.++...|++.  
T Consensus        14 ~~~p~i~lft-~~~C~~C~~a~~~L~~~~~~~~---~~~v~vd~---------------------~~~~~l~~~y~~~--   66 (100)
T d1wjka_          14 RALPVLTLFT-KAPCPLCDEAKEVLQPYKDRFI---LQEVDITL---------------------PENSTWYERYKFD--   66 (100)
T ss_dssp             CCCCEEEEEE-CSSCHHHHHHHHHTSTTSSSSE---EEEEETTS---------------------STTHHHHHHSSSS--
T ss_pred             CCCCEEEEEE-CCCCCChHHHHHHHHHhhhhcc---eEEEeccc---------------------ccCHHHHHHhccc--
Confidence            3467888899 9999999999888888755443   33333322                     3445678888875  


Q ss_pred             CCCCCCccEEEEEcCCCcEE
Q 028030          173 FFGSLPGRQTYILDKNGVVQ  192 (215)
Q Consensus       173 ~~g~~p~~~~~lid~~G~v~  192 (215)
                          +|   +++|  ||+.+
T Consensus        67 ----VP---vl~i--dg~~~   77 (100)
T d1wjka_          67 ----IP---VFHL--NGQFL   77 (100)
T ss_dssp             ----CS---EEEE--SSSEE
T ss_pred             ----CC---ceee--cCceE
Confidence                88   5556  56665

>d1v58a1 c.47.1.9 (A:62-230) Thiol:disulfide interchange protein DsbG, C-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: DsbC/DsbG C-terminal domain-like
domain: Thiol:disulfide interchange protein DsbG, C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=97.92  E-value=4e-05  Score=55.70  Aligned_cols=99  Identities=12%  Similarity=0.066  Sum_probs=60.3

Q ss_pred             eecCCcCCCcEEEEEEcCCCChhhHHHHHHHHHHHHHHHHcCcEEEEEeC--C--C-------------HHHHHHHHHHc
Q 028030           87 VSLSKFKGKPVVVYFYPADETPGCTKQACAFRDSYEKFKKAGAEVIGISG--D--D-------------SSSHKAFAKKY  149 (215)
Q Consensus        87 ~~l~~~~gk~~ll~f~~a~~C~~C~~~~~~l~~l~~~~~~~~v~vv~vs~--d--~-------------~~~~~~~~~~~  149 (215)
                      +....-..+++|++|+ -..||+|++..+.+.++.++.   .++++.+..  -  +             +....++....
T Consensus        29 i~~G~~~a~~tv~vF~-D~~CP~C~~~~~~l~~l~~~~---~v~v~~~~~~~~~~~s~~~a~a~~~a~~~~~~~~~~~~~  104 (169)
T d1v58a1          29 LLDGKKDAPVIVYVFA-DPFCPYCKQFWQQARPWVDSG---KVQLRTLLVGVIKPESPATAAAILASKDPAKTWQQYEAS  104 (169)
T ss_dssp             EEESCTTCSEEEEEEE-CTTCHHHHHHHHHHHHHHHTT---SEEEEEEECCCSSTTHHHHHHHHHHSSSHHHHHHHHHHT
T ss_pred             ceeCCCCCCEEEEEEE-CCCCcchHHHHHHHHHHHhcc---ceeEEEEecccCCcchHHHHHHHHhhhCHHHHHHHHHHh
Confidence            3333334578899998 999999999999998876543   366666543  1  1             11111222222


Q ss_pred             CCCeE--E---E-------EcCChhHHHHhCCCccCCCCCCccEEEEEcCCCcEEEEEeC
Q 028030          150 RLPYT--L---L-------SDEGNKVRKEWGVPADFFGSLPGRQTYILDKNGVVQLIYNN  197 (215)
Q Consensus       150 ~~~~~--~---~-------~d~~~~~~~~~g~~~~~~g~~p~~~~~lid~~G~v~~~~~g  197 (215)
                      +....  .   .       .+.+.++++.+|+.+     .|  ++|+.|++|++. ...|
T Consensus       105 ~~~~~~~~~~~~~~~~~~~i~~n~~~a~~~gi~g-----TP--t~i~~~~~g~~~-~~~G  156 (169)
T d1v58a1         105 GGKLKLNVPANVSTEQMKVLSDNEKLMDDLGANV-----TP--AIYYMSKENTLQ-QAVG  156 (169)
T ss_dssp             TTCCCCCCCSSCCHHHHHHHHHHHHHHHHHTCCS-----SC--EEEEEETTTEEE-EEES
T ss_pred             hhcccccccchhhHHHHHHHHHHHHHHHhcCCCC-----CC--EEEEECCCCCEE-EecC
Confidence            21111  0   0       123445788899987     88  888889999874 3555

>d1g7ea_ c.47.1.7 (A:) Endoplasmic reticulum protein ERP29, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: ERP29 N domain-like
domain: Endoplasmic reticulum protein ERP29, N-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=97.53  E-value=0.00017  Score=49.33  Aligned_cols=91  Identities=15%  Similarity=0.278  Sum_probs=56.9

Q ss_pred             CCCcEEEEEEcCCCChhhHHHHHHHHHHHHHHHHcCcEEEE-EeCCCHHHHHHHHHHcCCCeEEEEcCChhHHHHhCC--
Q 028030           93 KGKPVVVYFYPADETPGCTKQACAFRDSYEKFKKAGAEVIG-ISGDDSSSHKAFAKKYRLPYTLLSDEGNKVRKEWGV--  169 (215)
Q Consensus        93 ~gk~~ll~f~~a~~C~~C~~~~~~l~~l~~~~~~~~v~vv~-vs~d~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~g~--  169 (215)
                      ++|.+||.|+ +.||..|..  +..+++++++.+..-.+++ |...+-.                .+.+..+...+++  
T Consensus        20 ~~~~~lV~F~-~~wc~~~~~--~~~~~la~~~~~~~~~~~~~V~~~~vd----------------~~~n~~l~~~~~~~I   80 (122)
T d1g7ea_          20 KSKFVLVKFD-TQYPYGEKQ--DEFKRLAENSASSDDLLVAEVGISDYG----------------DKLNMELSEKYKLDK   80 (122)
T ss_dssp             GSSEEEEEEE-CSSCCTTTT--HHHHHHHHHGGGCSSEEEEEEESCCTT----------------SCHHHHHHHHHTCSS
T ss_pred             hCCeEEEEEe-cCCcCcccC--HHHHHHHHHHHHHHHHhhhccceeecc----------------ccccHHHHHhhcccc
Confidence            4689999999 999988863  6788888888765333333 4432110                1223456666664  


Q ss_pred             CccCCCCCCccEEEEEcCCCcEE--EEEeCCCCCCccHHHHHHHHhc
Q 028030          170 PADFFGSLPGRQTYILDKNGVVQ--LIYNNQFQPEKHIDETLKFLQS  214 (215)
Q Consensus       170 ~~~~~g~~p~~~~~lid~~G~v~--~~~~g~~~~~~~~~~il~~l~~  214 (215)
                      .+     +|  +++++. +|...  ..+.|    +...+.+++.|++
T Consensus        81 ~~-----yP--Ti~~f~-~G~~~~~~~y~G----~rt~~~l~~fi~~  115 (122)
T d1g7ea_          81 ES-----YP--VFYLFR-DGDFENPVPYSG----AVKVGAIQRWLKG  115 (122)
T ss_dssp             SS-----CE--EEEEEE-SSCCCCCEEEES----CCCHHHHHHHHHT
T ss_pred             cC-----CC--eEEEEe-cCcccCceecCC----CCCHHHHHHHHHh
Confidence            44     88  777774 55432  24556    3557788888875

>d1eeja1 c.47.1.9 (A:61-216) Disulfide bond isomerase, DsbC, C-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: DsbC/DsbG C-terminal domain-like
domain: Disulfide bond isomerase, DsbC, C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=97.30  E-value=0.00022  Score=50.91  Aligned_cols=38  Identities=21%  Similarity=0.174  Sum_probs=29.8

Q ss_pred             CCCcEEEEEEcCCCChhhHHHHHHHHHHHHHHHHcCcEEEEEe
Q 028030           93 KGKPVVVYFYPADETPGCTKQACAFRDSYEKFKKAGAEVIGIS  135 (215)
Q Consensus        93 ~gk~~ll~f~~a~~C~~C~~~~~~l~~l~~~~~~~~v~vv~vs  135 (215)
                      .+|.+|+.|. -..||+|++..+.+.++.+    .++.++.+.
T Consensus        25 ~ak~tIv~Fs-D~~CpyC~~~~~~l~~~~~----~~~~~~~~~   62 (156)
T d1eeja1          25 QEKHVITVFT-DITCGYCHKLHEQMADYNA----LGITVRYLA   62 (156)
T ss_dssp             TCCEEEEEEE-CTTCHHHHHHHTTHHHHHH----TTEEEEEEE
T ss_pred             CCCEEEEEEe-CCCCHHHHHHHHHHHHhhc----cCceEEEEe
Confidence            5689999999 8999999999999888743    356665543

>d1fvka_ c.47.1.13 (A:) Disulfide-bond formation facilitator (DsbA) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: DsbA-like
domain: Disulfide-bond formation facilitator (DsbA)
species: Escherichia coli [TaxId: 562]

Probab=97.10  E-value=0.00017  Score=52.58  Aligned_cols=54  Identities=22%  Similarity=0.329  Sum_probs=35.8

Q ss_pred             CCCCeee-c-CCcCCCcEEEEEEcCCCChhhHHHHHHHHHHHHHHHH--cCcEEEEEeC
Q 028030           82 QEGRNVS-L-SKFKGKPVVVYFYPADETPGCTKQACAFRDSYEKFKK--AGAEVIGISG  136 (215)
Q Consensus        82 ~~g~~~~-l-~~~~gk~~ll~f~~a~~C~~C~~~~~~l~~l~~~~~~--~~v~vv~vs~  136 (215)
                      .+|+.+. + ....++++||.|+ .-.||+|....+.+..+.+..+.  .++.++....
T Consensus         4 ~eG~~y~~~~~p~~~~~~VvEff-dy~Cp~C~~~~~~l~~~~~~~~~~~~~~~~~~~~~   61 (188)
T d1fvka_           4 EDGKQYTTLEKPVAGAPQVLEFF-SFFCPHCYQFEEVLHISDNVKKKLPEGVKMTKYHV   61 (188)
T ss_dssp             CBTTTEEECSSCCTTCCSEEEEE-CTTCHHHHHHHHTTCHHHHHHTTSCTTCCEEEEEC
T ss_pred             CCCCCcEECCCCCCCCCEEEEEE-CCCChhhHHHHHHHHHHHHHhhccCCceEEEEEec
Confidence            3555433 2 2236789999999 99999999988887665543332  2466666643

>d1z6ma1 c.47.1.13 (A:1-172) Hypothetical protein EF0770 {Enterococcus faecalis [TaxId: 1351]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: DsbA-like
domain: Hypothetical protein EF0770
species: Enterococcus faecalis [TaxId: 1351]

Probab=97.02  E-value=0.0055  Score=43.37  Aligned_cols=48  Identities=17%  Similarity=0.131  Sum_probs=38.3

Q ss_pred             eecCCcCCCcEEEEEEcCCCChhhHHHHHHHHHHHHHHHHcC-cEEEEEe
Q 028030           87 VSLSKFKGKPVVVYFYPADETPGCTKQACAFRDSYEKFKKAG-AEVIGIS  135 (215)
Q Consensus        87 ~~l~~~~gk~~ll~f~~a~~C~~C~~~~~~l~~l~~~~~~~~-v~vv~vs  135 (215)
                      +.+.+-.+++.|+.|+ ...||+|.+..+.+.++.+++.+.+ +.++.+.
T Consensus        17 ~~~G~~~a~v~I~ef~-d~~Cp~C~~~~~~~~~~~~~~~~~~~~~~~~~~   65 (172)
T d1z6ma1          17 LHIGESNAPVKMIEFI-NVRCPYCRKWFEESEELLAQSVKSGKVERIIKL   65 (172)
T ss_dssp             EEESCTTCSEEEEEEE-CTTCHHHHHHHHHHHHHHHHHHHTTSEEEEEEE
T ss_pred             CeecCCCCCEEEEEEE-CCCCHhHHHHHHHHhhhhhhhccccceeeeecc
Confidence            4566656688899999 9999999999999999999998763 5555544

>d1beda_ c.47.1.13 (A:) Disulfide-bond formation facilitator (DsbA) {Vibrio cholerae [TaxId: 666]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: DsbA-like
domain: Disulfide-bond formation facilitator (DsbA)
species: Vibrio cholerae [TaxId: 666]

Probab=97.01  E-value=0.00062  Score=48.92  Aligned_cols=40  Identities=18%  Similarity=0.251  Sum_probs=32.8

Q ss_pred             CCCcEEEEEEcCCCChhhHHHHHHHHHHHHHHHHcCcEEEEE
Q 028030           93 KGKPVVVYFYPADETPGCTKQACAFRDSYEKFKKAGAEVIGI  134 (215)
Q Consensus        93 ~gk~~ll~f~~a~~C~~C~~~~~~l~~l~~~~~~~~v~vv~v  134 (215)
                      .++++||.|+ ...||+|....+.+.++.+++.+. +.++.+
T Consensus        17 ~~~~~Ivef~-d~~Cp~C~~~~~~~~~l~~~~~~~-~~~~~~   56 (181)
T d1beda_          17 SSSPVVSEFF-SFYCPHCNTFEPIIAQLKQQLPEG-AKFQKN   56 (181)
T ss_dssp             CSSCEEEEEE-CTTCHHHHHHHHHHHHHHHTSCTT-CEEEEE
T ss_pred             CCCCEEEEEE-CCCCccchhhhhhhhhHhhhcccc-cceeEE
Confidence            5789999999 999999999999999998888764 444443

>d1t3ba1 c.47.1.9 (A:61-210) Disulfide bond isomerase, DsbC, C-terminal domain {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: DsbC/DsbG C-terminal domain-like
domain: Disulfide bond isomerase, DsbC, C-terminal domain
species: Haemophilus influenzae [TaxId: 727]

Probab=96.66  E-value=0.0028  Score=44.55  Aligned_cols=38  Identities=18%  Similarity=0.187  Sum_probs=29.5

Q ss_pred             CCCcEEEEEEcCCCChhhHHHHHHHHHHHHHHHHcCcEEEEEe
Q 028030           93 KGKPVVVYFYPADETPGCTKQACAFRDSYEKFKKAGAEVIGIS  135 (215)
Q Consensus        93 ~gk~~ll~f~~a~~C~~C~~~~~~l~~l~~~~~~~~v~vv~vs  135 (215)
                      .+|.+|++|. -..||+|++..+.+.++.+    .+..++.+.
T Consensus        25 ~ak~~I~~Fs-D~~CPyC~~~~~~l~~l~~----~~~~v~~~~   62 (150)
T d1t3ba1          25 NEKHVVTVFM-DITCHYCHLLHQQLKEYND----LGITVRYLA   62 (150)
T ss_dssp             TCSEEEEEEE-CTTCHHHHHHHTTHHHHHH----TTEEEEEEE
T ss_pred             CCCEEEEEEE-CCCCHHHHHHhHHHHHHhc----cCceEEEEE
Confidence            4688999999 8999999999999988754    345555543

>d1r7ha_ c.47.1.1 (A:) Glutaredoxin-like NRDH-redoxin {Corynebacterium ammoniagenes [TaxId: 1697]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Glutaredoxin-like NRDH-redoxin
species: Corynebacterium ammoniagenes [TaxId: 1697]

Probab=96.36  E-value=0.0055  Score=37.44  Aligned_cols=42  Identities=12%  Similarity=0.199  Sum_probs=29.0

Q ss_pred             EEEEEcCCCChhhHHHHHHHHHHHHHHHHcCcEEEEEeCCCHHHHHHHHH
Q 028030           98 VVYFYPADETPGCTKQACAFRDSYEKFKKAGAEVIGISGDDSSSHKAFAK  147 (215)
Q Consensus        98 ll~f~~a~~C~~C~~~~~~l~~l~~~~~~~~v~vv~vs~d~~~~~~~~~~  147 (215)
                      |+.|. .++|++|.+....|       ++.|+.+.-+.++...+..++++
T Consensus         3 v~iYt-~~~C~~C~~ak~~L-------~~~~i~~~~~~i~~~~~~~~~~~   44 (74)
T d1r7ha_           3 ITLYT-KPACVQCTATKKAL-------DRAGLAYNTVDISLDDEARDYVM   44 (74)
T ss_dssp             EEEEE-CTTCHHHHHHHHHH-------HHTTCCCEEEETTTCHHHHHHHH
T ss_pred             EEEEe-CCCChhHHHHHHHH-------HHcCCceEEEEccCCHHHHHHHH
Confidence            45666 89999999775544       34578888888876555444443

>d1h75a_ c.47.1.1 (A:) Glutaredoxin-like NRDH-redoxin {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Glutaredoxin-like NRDH-redoxin
species: Escherichia coli [TaxId: 562]

Probab=96.28  E-value=0.0066  Score=37.37  Aligned_cols=43  Identities=12%  Similarity=0.190  Sum_probs=28.0

Q ss_pred             EEEEEcCCCChhhHHHHHHHHHHHHHHHHcCcEEEEEeCCCHHHHHHHHHH
Q 028030           98 VVYFYPADETPGCTKQACAFRDSYEKFKKAGAEVIGISGDDSSSHKAFAKK  148 (215)
Q Consensus        98 ll~f~~a~~C~~C~~~~~~l~~l~~~~~~~~v~vv~vs~d~~~~~~~~~~~  148 (215)
                      |+.|. .+||++|.+....|       .++|+.+.-+.++...+..++++.
T Consensus         3 i~iYs-~~~C~~C~~ak~~L-------~~~~i~y~~~~i~~~~~~~~~~~~   45 (76)
T d1h75a_           3 ITIYT-RNDCVQCHATKRAM-------ENRGFDFEMINVDRVPEAAEALRA   45 (76)
T ss_dssp             EEEEE-CTTCHHHHHHHHHH-------HHTTCCCEEEETTTCHHHHHHHHH
T ss_pred             EEEEe-CCCCccHHHHHHHH-------HhcCceeEEEeecCCHHHHHHHHh
Confidence            45566 89999999775444       445788777777655444444443

>d1a8la1 c.47.1.2 (A:1-119) Protein disulfide isomerase, PDI {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: PDI-like
domain: Protein disulfide isomerase, PDI
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=94.77  E-value=0.12  Score=34.47  Aligned_cols=76  Identities=18%  Similarity=0.247  Sum_probs=47.1

Q ss_pred             CCcCCCcEEEEEEcCCCChhhHHHHHHHHHHHHHHHHcCcEEEEEeCCCHHHHHHHHHHcCCCeEEEEcCChhHHHHhCC
Q 028030           90 SKFKGKPVVVYFYPADETPGCTKQACAFRDSYEKFKKAGAEVIGISGDDSSSHKAFAKKYRLPYTLLSDEGNKVRKEWGV  169 (215)
Q Consensus        90 ~~~~gk~~ll~f~~a~~C~~C~~~~~~l~~l~~~~~~~~v~vv~vs~d~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~g~  169 (215)
                      +.+++.+.|+.|.....|+.|.....-+++++.- .++ +.+.-...++++                   ..++++.|++
T Consensus        18 ~~l~~pV~l~~~~~~~~~~~~~e~~~ll~ela~l-Sdk-i~~~~~~~~~~e-------------------~~~~~~~~~v   76 (119)
T d1a8la1          18 SKMVNPVKLIVFVRKDHCQYCDQLKQLVQELSEL-TDK-LSYEIVDFDTPE-------------------GKELAKRYRI   76 (119)
T ss_dssp             GGCCSCEEEEEEECSSSCTTHHHHHHHHHHHHTT-CTT-EEEEEEETTSHH-------------------HHHHHHHTTC
T ss_pred             HhCCCCEEEEEEecCCCchhHHHHHHHHHHHHhh-CCC-eEEEEeccCcch-------------------hhhHHHhhcc
Confidence            4455556677776446799999776666666433 332 555555544443                   2567888999


Q ss_pred             CccCCCCCCccEEEEEcCCCc---EEEE
Q 028030          170 PADFFGSLPGRQTYILDKNGV---VQLI  194 (215)
Q Consensus       170 ~~~~~g~~p~~~~~lid~~G~---v~~~  194 (215)
                      ..     .|  ++.+.+ +|+   |++.
T Consensus        77 er-----~P--s~~i~~-~g~~~gIrF~   96 (119)
T d1a8la1          77 DR-----AP--ATTITQ-DGKDFGVRYF   96 (119)
T ss_dssp             CS-----SS--EEEEEE-TTBCCSEEEE
T ss_pred             cc-----Cc--eEEEec-CCcccceEEE
Confidence            87     88  666655 443   6544

>d1pn0a2 c.47.1.10 (A:462-662) Phenol hydroxylase, C-terminal domain {Soil-living yeast (Trichosporon cutaneum) [TaxId: 5554]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Phenol hydroxylase, C-terminal domain
species: Soil-living yeast (Trichosporon cutaneum) [TaxId: 5554]

Probab=94.64  E-value=0.24  Score=36.00  Aligned_cols=123  Identities=16%  Similarity=0.238  Sum_probs=76.0

Q ss_pred             ccccCCCCCCCCCeEEeC-CCCCeeecCCc---CCCcEEEEEEcCCCChhhHHHHHHHHHHHHHHHH----------c--
Q 028030           64 ISAKVSKGQAPPSFTLKD-QEGRNVSLSKF---KGKPVVVYFYPADETPGCTKQACAFRDSYEKFKK----------A--  127 (215)
Q Consensus        64 ~~~~~~~g~~~P~f~l~~-~~g~~~~l~~~---~gk~~ll~f~~a~~C~~C~~~~~~l~~l~~~~~~----------~--  127 (215)
                      ...++.+|.++|+..+.. .|++++.|.+.   .|++.|++|- +.-.  +......|.++.+.+..          .  
T Consensus        13 lA~~~~iG~R~~sa~V~R~aDa~p~~L~~~~~adGrfrI~vFa-Gd~~--~~~~~~~l~~la~~L~s~~s~~~r~t~~~~   89 (201)
T d1pn0a2          13 LAKNCVVGTRFKSQPVVRHSEGLWMHFGDRLVTDGRFRIIVFA-GKAT--DATQMSRIKKFAAYLDSENSVISRYTPKGA   89 (201)
T ss_dssp             GBTTSCTTSBCCCCEEEETTTTEEEEGGGGCCCSSCEEEEEEE-ECTT--SHHHHHHHHHHHHHHHSTTSHHHHHSBTTS
T ss_pred             HhcCCCCceecCCceEEEecCCCEeehhccccCCCcEEEEEEe-cCCC--ccchhhHHHHHHHHHhcccchhhhccCCCC
Confidence            346789999999999876 79999999774   6899999997 4432  22333444444433321          1  


Q ss_pred             ----CcEEEEEeCCCHH--HHHHH---HHHcCCCeE-EEE------cCChhHHHHhCCCccCCCCCCccEEEEEcCCCcE
Q 028030          128 ----GAEVIGISGDDSS--SHKAF---AKKYRLPYT-LLS------DEGNKVRKEWGVPADFFGSLPGRQTYILDKNGVV  191 (215)
Q Consensus       128 ----~v~vv~vs~d~~~--~~~~~---~~~~~~~~~-~~~------d~~~~~~~~~g~~~~~~g~~p~~~~~lid~~G~v  191 (215)
                          -++++.|......  ++.++   +...++.|. +..      +..+..+..||+..+      ...++|+-|||-|
T Consensus        90 d~~~~i~~~~V~~~~~~~ie~~dlP~~~~~~~~~~~~~~~d~~~~~~~~~~ay~~~GId~~------~G~vVVVRPDgyV  163 (201)
T d1pn0a2          90 DRNSRIDVITIHSCHRDDIEMHDFPAPALHPKWQYDFIYADCDSWHHPHPKSYQAWGVDET------KGAVVVVRPDGYT  163 (201)
T ss_dssp             CTTSSEEEEEEESSCTTSCCGGGSCTTTTSCTTCCSSEEECSCCSSSCCCCHHHHHTBCTT------TCEEEEECTTSBE
T ss_pred             CCCCcEEEEEEecCCCCccccccccccccCCcceEEeeecccccccCCcccHHHHhCCCCC------ceEEEEECCCcce
Confidence                2788888653321  11111   111222221 222      245689999998742      2279999999999


Q ss_pred             EEEE
Q 028030          192 QLIY  195 (215)
Q Consensus       192 ~~~~  195 (215)
                      -...
T Consensus       164 g~v~  167 (201)
T d1pn0a2         164 SLVT  167 (201)
T ss_dssp             EEEE
T ss_pred             EEEE
Confidence            6554

>d1nm3a1 c.47.1.1 (A:166-239) C-terminal, Grx domain of Hybrid-Prx5 {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: C-terminal, Grx domain of Hybrid-Prx5
species: Haemophilus influenzae [TaxId: 727]

Probab=94.34  E-value=0.041  Score=33.28  Aligned_cols=34  Identities=21%  Similarity=0.252  Sum_probs=23.5

Q ss_pred             EEEEEcCCCChhhHHHHHHHHHHHHHHHHcCcEEEEEeCCCH
Q 028030           98 VVYFYPADETPGCTKQACAFRDSYEKFKKAGAEVIGISGDDS  139 (215)
Q Consensus        98 ll~f~~a~~C~~C~~~~~~l~~l~~~~~~~~v~vv~vs~d~~  139 (215)
                      |+.|. .++|++|.+....|.+       .|+.+..+.++..
T Consensus         7 I~iYs-~~~C~~C~~ak~lL~~-------~~i~~~~~~v~~~   40 (74)
T d1nm3a1           7 ISIFT-KPGCPFCAKAKQLLHD-------KGLSFEEIILGHD   40 (74)
T ss_dssp             EEEEE-CSSCHHHHHHHHHHHH-------HTCCCEEEETTTT
T ss_pred             EEEEE-CCCCHHHHHHHHHHHH-------cCCCeEEEEccCc
Confidence            56677 8999999977655544       3677766666543

>d2axoa1 c.47.1.19 (A:38-262) Hypothetical protein Atu2684 {Agrobacterium tumefaciens [TaxId: 358]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Atu2684-like
domain: Hypothetical protein Atu2684
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=93.43  E-value=0.14  Score=38.10  Aligned_cols=40  Identities=18%  Similarity=0.220  Sum_probs=30.7

Q ss_pred             CcEEEEEEcCCCChhhHHHHHHHHHHHHHHHHcCcEEEEEeCC
Q 028030           95 KPVVVYFYPADETPGCTKQACAFRDSYEKFKKAGAEVIGISGD  137 (215)
Q Consensus        95 k~~ll~f~~a~~C~~C~~~~~~l~~l~~~~~~~~v~vv~vs~d  137 (215)
                      +..||..|-+.||..|..--..|.+|.++   .+|..|++.+|
T Consensus         5 ~~aVVElFTSqgCssCPpAd~~L~~L~~~---~~Vi~La~HVd   44 (225)
T d2axoa1           5 VKGVVELFTSQGCASCPPADEALRKMIQK---GDVVGLSYHVD   44 (225)
T ss_dssp             CCCEEEEEECTTCTTCHHHHHHHHHHHHH---TSSEEEEEECS
T ss_pred             CCcEEEEeeCCCCCCCHHHHHHHHHhhCC---CCEEEEEeccc
Confidence            34566655599999999998999998652   35888888875

>d1iloa_ c.47.1.1 (A:) MTH985, a thioredoxin {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: MTH985, a thioredoxin
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=92.80  E-value=0.41  Score=29.14  Aligned_cols=73  Identities=21%  Similarity=0.341  Sum_probs=43.6

Q ss_pred             EEEEcCCCChhhHHHHHHHHHHHHHHHHcCcEEEEEeCCCHHHHHHHHHHcCCCeEEEEcCChhHHHHhCCCccCCCCCC
Q 028030           99 VYFYPADETPGCTKQACAFRDSYEKFKKAGAEVIGISGDDSSSHKAFAKKYRLPYTLLSDEGNKVRKEWGVPADFFGSLP  178 (215)
Q Consensus        99 l~f~~a~~C~~C~~~~~~l~~l~~~~~~~~v~vv~vs~d~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~g~~~~~~g~~p  178 (215)
                      |..+ ++.|+.|.+.....++..+++. -..++.-|                      .| -.++. .||+-.     .|
T Consensus         4 IkVl-g~gC~~C~~~~~~v~~a~~e~g-i~a~v~kv----------------------~d-~~ei~-~ygVms-----tP   52 (77)
T d1iloa_           4 IQIY-GTGCANCQMLEKNAREAVKELG-IDAEFEKI----------------------KE-MDQIL-EAGLTA-----LP   52 (77)
T ss_dssp             EEEE-CSSSSTTHHHHHHHHHHHHHTT-CCEEEEEE----------------------CS-HHHHH-HHTCSS-----SS
T ss_pred             EEEe-CCCCccHHHHHHHHHHHHHHcC-CceEEEEe----------------------CC-HHHHH-HcCCcC-----CC
Confidence            4456 8899999998888887665543 22334333                      11 22444 589986     88


Q ss_pred             ccEEEEEcCCCcEEEEEeCCCCCCccHHHHHHHH
Q 028030          179 GRQTYILDKNGVVQLIYNNQFQPEKHIDETLKFL  212 (215)
Q Consensus       179 ~~~~~lid~~G~v~~~~~g~~~~~~~~~~il~~l  212 (215)
                         .++|  ||+++  +.|...   ..+++.+.|
T Consensus        53 ---alvI--dg~vv--~~G~vP---s~~ei~~~L   76 (77)
T d1iloa_          53 ---GLAV--DGELK--IMGRVA---SKEEIKKIL   76 (77)
T ss_dssp             ---CEEE--TTEEE--ECSSCC---CHHHHHHHC
T ss_pred             ---EEEE--CCEEE--EEecCC---CHHHHHHHh
Confidence               4556  67875  455432   335555543

>d1fova_ c.47.1.1 (A:) Glutaredoxin (Grx, thioltransferase) {Escherichia coli, Grx3 [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Glutaredoxin (Grx, thioltransferase)
species: Escherichia coli, Grx3 [TaxId: 562]

Probab=92.28  E-value=0.21  Score=30.48  Aligned_cols=33  Identities=12%  Similarity=0.295  Sum_probs=21.7

Q ss_pred             EEEEcCCCChhhHHHHHHHHHHHHHHHHcCcEEEEEeCCCH
Q 028030           99 VYFYPADETPGCTKQACAFRDSYEKFKKAGAEVIGISGDDS  139 (215)
Q Consensus        99 l~f~~a~~C~~C~~~~~~l~~l~~~~~~~~v~vv~vs~d~~  139 (215)
                      ..|. .+||++|.+.-..|.+       .|+.+..+.++..
T Consensus         4 ~iys-~~~Cp~C~~ak~~L~~-------~~i~y~~~di~~~   36 (82)
T d1fova_           4 EIYT-KETCPYCHRAKALLSS-------KGVSFQELPIDGN   36 (82)
T ss_dssp             EEEE-CSSCHHHHHHHHHHHH-------HTCCCEEEECTTC
T ss_pred             EEEe-CCCCHhHHHHHHHHHH-------cCCCeEEEeccch
Confidence            4455 8999999976544433       3677777766543

>d2djka1 c.47.1.2 (A:1-133) Protein disulfide isomerase, PDI {Fungi (Humicola insolens) [TaxId: 34413]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: PDI-like
domain: Protein disulfide isomerase, PDI
species: Fungi (Humicola insolens) [TaxId: 34413]

Probab=91.74  E-value=0.36  Score=32.25  Aligned_cols=76  Identities=11%  Similarity=0.104  Sum_probs=51.0

Q ss_pred             CCCcEEEEEEcCCCChhhHHHHHHHHHHHHHHHHcCcEEEEEeCCCHHHHHHHHHHcCCCeEEEEcCChhHHHHhCCCcc
Q 028030           93 KGKPVVVYFYPADETPGCTKQACAFRDSYEKFKKAGAEVIGISGDDSSSHKAFAKKYRLPYTLLSDEGNKVRKEWGVPAD  172 (215)
Q Consensus        93 ~gk~~ll~f~~a~~C~~C~~~~~~l~~l~~~~~~~~v~vv~vs~d~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~g~~~~  172 (215)
                      .++++++.|+ ... .........+.+++++|+++ +.++.+..+                     ........||+...
T Consensus        22 ~~~pl~~lf~-~~~-~~~~~~~~~~~~vA~~~~~k-i~Fv~vd~~---------------------~~~~~l~~~gl~~~   77 (133)
T d2djka1          22 AGIPLAYIFA-ETA-EERKELSDKLKPIAEAQRGV-INFGTIDAK---------------------AFGAHAGNLNLKTD   77 (133)
T ss_dssp             TTSCEEEEEC-SCS-SSHHHHHHHHHHHHHSSTTT-SEEEEECTT---------------------TTGGGTTTTTCCSS
T ss_pred             CCCCEEEEEe-CCc-hHHHHHHHHHHHHHHHhcCc-eEEEEEeHH---------------------HhHHHHHHhcCCcc
Confidence            4678888777 443 45677888888888888865 777777432                     22345566777542


Q ss_pred             CCCCCCccEEEEEcCCCcEEEEEeC
Q 028030          173 FFGSLPGRQTYILDKNGVVQLIYNN  197 (215)
Q Consensus       173 ~~g~~p~~~~~lid~~G~v~~~~~g  197 (215)
                         ..|  .+++++.++...+.+..
T Consensus        78 ---~~P--~~~i~~~~~~~~~~~~~   97 (133)
T d2djka1          78 ---KFP--AFAIQEVAKNQKFPFDQ   97 (133)
T ss_dssp             ---SSS--EEEEECTTTCCBCCCCS
T ss_pred             ---cCC--cEEEEEcCCCceecCCc
Confidence               277  88999888776655543

>d1ttza_ c.47.1.1 (A:) Hypothetical protein XCC2852 {Xanthomonas campestris [TaxId: 339]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Hypothetical protein XCC2852
species: Xanthomonas campestris [TaxId: 339]

Probab=91.50  E-value=0.24  Score=29.97  Aligned_cols=31  Identities=13%  Similarity=0.225  Sum_probs=17.9

Q ss_pred             EEEcCCCChhhHHHHHHHHHHHHHHHHcCcEEEEEeCC
Q 028030          100 YFYPADETPGCTKQACAFRDSYEKFKKAGAEVIGISGD  137 (215)
Q Consensus       100 ~f~~a~~C~~C~~~~~~l~~l~~~~~~~~v~vv~vs~d  137 (215)
                      .|. ..+|+.|......|.+      ..++.+.-|.++
T Consensus         4 Lyt-~~~C~LCe~A~~~l~~------~~~~~~~~vdI~   34 (75)
T d1ttza_           4 LYQ-RDDCHLCDQAVEALAQ------ARAGAFFSVFID   34 (75)
T ss_dssp             EEE-CSSCHHHHHHHHHHHH------TTCCCEEEEECT
T ss_pred             EEC-CCCccHHHHHHHHHHh------ccCCcEEEEEcc
Confidence            344 8999999754333321      235666666553

>d1egoa_ c.47.1.1 (A:) Glutaredoxin (Grx, thioltransferase) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Glutaredoxin (Grx, thioltransferase)
species: Escherichia coli [TaxId: 562]

Probab=90.42  E-value=0.09  Score=32.60  Aligned_cols=37  Identities=11%  Similarity=0.024  Sum_probs=27.7

Q ss_pred             EEEEEcCCCChhhHHHHHHHHHHHHHHHHcCcEEEEEeCC
Q 028030           98 VVYFYPADETPGCTKQACAFRDSYEKFKKAGAEVIGISGD  137 (215)
Q Consensus        98 ll~f~~a~~C~~C~~~~~~l~~l~~~~~~~~v~vv~vs~d  137 (215)
                      ++.|. -++|++|.+.-.-|.++-.+++  ++.+.-+..+
T Consensus         3 vviys-k~~Cp~C~~aK~ll~~~~~~~~--~i~~~~~~~~   39 (85)
T d1egoa_           3 TVIFG-RSGCPYCVRAKDLAEKLSNERD--DFQYQYVDIR   39 (85)
T ss_dssp             EEEEC-CTTSTHHHHHHHHHHHHHHHHS--SCEEEEECHH
T ss_pred             EEEEe-CCCCHhHHHHHHHHHHcCCCCC--CceEEEEecC
Confidence            45566 8999999988888888766666  5777766543

>d1un2a_ c.47.1.13 (A:) Disulfide-bond formation facilitator (DsbA) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: DsbA-like
domain: Disulfide-bond formation facilitator (DsbA)
species: Escherichia coli [TaxId: 562]

Probab=90.42  E-value=0.075  Score=38.62  Aligned_cols=42  Identities=19%  Similarity=0.341  Sum_probs=31.5

Q ss_pred             CCCcEEEEEEcCCCChhhHHHHHHHH---HHHHHHHHcCcEEEEEeC
Q 028030           93 KGKPVVVYFYPADETPGCTKQACAFR---DSYEKFKKAGAEVIGISG  136 (215)
Q Consensus        93 ~gk~~ll~f~~a~~C~~C~~~~~~l~---~l~~~~~~~~v~vv~vs~  136 (215)
                      .+++.|+.|| .-+||+|....+.|.   ++.+++++ ++.++-+..
T Consensus       112 ~~~~~VvEff-sy~Cp~C~~~e~~l~~~~~~~~~~~~-~v~~~~~~~  156 (195)
T d1un2a_         112 AGAPQVLEFF-SFFCPHCYQFEEVLHISDNVKKKLPE-GVKMTKYHV  156 (195)
T ss_dssp             TTCCSEEEEE-CTTCHHHHHHHHTSCHHHHHTTSSCT-TCCEEEEEC
T ss_pred             CCCceEEEEE-ecCCccccccchhhhHHHHHHhhcCC-CcEEEEEec
Confidence            4789999999 899999999888765   55555554 467666543

>d1wika_ c.47.1.1 (A:) Thioredoxin-like protein 2 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin-like protein 2
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=84.88  E-value=0.93  Score=29.24  Aligned_cols=37  Identities=8%  Similarity=-0.080  Sum_probs=25.9

Q ss_pred             CCChhhHHHHHHHHHHHHHHHHcCcEEEEEeCCCHHHHHHHHHH
Q 028030          105 DETPGCTKQACAFRDSYEKFKKAGAEVIGISGDDSSSHKAFAKK  148 (215)
Q Consensus       105 ~~C~~C~~~~~~l~~l~~~~~~~~v~vv~vs~d~~~~~~~~~~~  148 (215)
                      +.|++|.+....|.       ..|+.+..+.+++..++++++.+
T Consensus        28 p~Cp~c~~ak~lL~-------~~~i~~~~~~v~~~~~~~~~l~~   64 (109)
T d1wika_          28 AKCGFSKQILEILN-------STGVEYETFDILEDEEVRQGLKT   64 (109)
T ss_dssp             CCSSTHHHHHHHHH-------HTCSCEEEEESSSCHHHHHHHHH
T ss_pred             CCChHHHHHHHHHH-------hcCCCceEEEecccHHHHHHHHH
Confidence            66999997765554       34788888888776666655543

>d1ktea_ c.47.1.1 (A:) Glutaredoxin (Grx, thioltransferase) {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Glutaredoxin (Grx, thioltransferase)
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=84.04  E-value=0.093  Score=34.02  Aligned_cols=47  Identities=21%  Similarity=0.240  Sum_probs=26.1

Q ss_pred             EEEEEcCCCChhhHHHHHHHHHHHHHHHHcCcEEEEEeCC-CHHHHHHHHH
Q 028030           98 VVYFYPADETPGCTKQACAFRDSYEKFKKAGAEVIGISGD-DSSSHKAFAK  147 (215)
Q Consensus        98 ll~f~~a~~C~~C~~~~~~l~~l~~~~~~~~v~vv~vs~d-~~~~~~~~~~  147 (215)
                      |+.|. .+|||+|...-.-|.++..++.  .+.++-+..+ +.+.++++++
T Consensus        14 Vviys-k~~Cp~C~~ak~ll~~~~~~~~--~~~~~e~d~~~d~~~~~~~l~   61 (105)
T d1ktea_          14 VVVFI-KPTCPFCRKTQELLSQLPFKEG--LLEFVDITATSDTNEIQDYLQ   61 (105)
T ss_dssp             EEEEE-CSSCHHHHHHHHHHHHSCBCTT--SEEEEEGGGSTTHHHHHHHHH
T ss_pred             EEEEE-CCCCchHHHHHHHHHHhCCccc--eeeeeecccccccHHHHHHHh
Confidence            55677 8999999987665554322111  2445555433 3444444443

>d2qy9a2 c.37.1.10 (A:285-495) GTPase domain of the signal recognition particle receptor FtsY {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal recognition particle receptor FtsY
species: Escherichia coli [TaxId: 562]

Probab=84.02  E-value=5  Score=28.85  Aligned_cols=62  Identities=15%  Similarity=0.280  Sum_probs=43.2

Q ss_pred             CcEEEEEEcCCCChhhHHHHHHHHHHHHHHHHcCcEEEEEeCCC-----HHHHHHHHHHcCCCeEEEEcCC
Q 028030           95 KPVVVYFYPADETPGCTKQACAFRDSYEKFKKAGAEVIGISGDD-----SSSHKAFAKKYRLPYTLLSDEG  160 (215)
Q Consensus        95 k~~ll~f~~a~~C~~C~~~~~~l~~l~~~~~~~~v~vv~vs~d~-----~~~~~~~~~~~~~~~~~~~d~~  160 (215)
                      ++.+|.|.--++.+ =..   .+.+|+..++++|-.|.-|+.|+     .|.++.|.+..++++....++.
T Consensus         8 ~p~vi~lvGptGvG-KTT---TiAKLA~~~~~~g~kV~lit~Dt~R~gA~eQL~~~a~~l~v~~~~~~~~~   74 (211)
T d2qy9a2           8 APFVILMVGVNGVG-KTT---TIGKLARQFEQQGKSVMLAAGDTFRAAAVEQLQVWGQRNNIPVIAQHTGA   74 (211)
T ss_dssp             TTEEEEEECCTTSC-HHH---HHHHHHHHHHTTTCCEEEECCCTTCHHHHHHHHHHHHHTTCCEECCSTTC
T ss_pred             CCEEEEEECCCCCC-HHH---HHHHHHHHHHHCCCcEEEEecccccccchhhhhhhhhhcCCcccccccCC
Confidence            47788777345554 222   34455556666677888888886     3788999999999987766544

>d2b5ea3 c.47.1.2 (A:240-364) Protein disulfide isomerase, PDI {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: PDI-like
domain: Protein disulfide isomerase, PDI
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=83.61  E-value=4.1  Score=26.49  Aligned_cols=73  Identities=16%  Similarity=0.195  Sum_probs=49.1

Q ss_pred             CCCcEEEEEEcCCCChhhHHHHHHHHHHHHHHHHcCcEEEEEeCCCHHHHHHHHHHcCCCeEEEEcCChhHHHHhCCCcc
Q 028030           93 KGKPVVVYFYPADETPGCTKQACAFRDSYEKFKKAGAEVIGISGDDSSSHKAFAKKYRLPYTLLSDEGNKVRKEWGVPAD  172 (215)
Q Consensus        93 ~gk~~ll~f~~a~~C~~C~~~~~~l~~l~~~~~~~~v~vv~vs~d~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~g~~~~  172 (215)
                      .|+++++.|+ .+- ..-......+.+++++|+++ +.++.+..+                     ......+.||+..+
T Consensus        16 ~~~Pl~~~f~-~~~-~~~~~~~~~~~~vAk~fkgk-i~Fv~~D~~---------------------~~~~~l~~fgl~e~   71 (125)
T d2b5ea3          16 SGLPLGYLFY-NDE-EELEEYKPLFTELAKKNRGL-MNFVSIDAR---------------------KFGRHAGNLNMKEQ   71 (125)
T ss_dssp             TTSCEEEEEE-SSH-HHHHHHHHHHHHHHHHTTTT-CEEEEEEHH---------------------HHTTHHHHTTCCSC
T ss_pred             cCCCEEEEEe-CCh-HHHHHHHHHHHHHHHHhcCe-eEEEEEchH---------------------HhHHHHHHcCCCcc
Confidence            4788888888 543 23456777888888888765 777777431                     23456677888642


Q ss_pred             CCCCCCccEEEEEcCCCcEEEEE
Q 028030          173 FFGSLPGRQTYILDKNGVVQLIY  195 (215)
Q Consensus       173 ~~g~~p~~~~~lid~~G~v~~~~  195 (215)
                          .|  .+.+++.+..-.+..
T Consensus        72 ----~P--~~~i~~~~~~~ky~~   88 (125)
T d2b5ea3          72 ----FP--LFAIHDMTEDLKYGL   88 (125)
T ss_dssp             ----SS--EEEEEETTTTEEEEC
T ss_pred             ----CC--cEEEEecccCccccc
Confidence                67  888888777666554

>d1z3ea1 c.47.1.12 (A:1-114) Regulatory protein Spx {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: ArsC-like
domain: Regulatory protein Spx
species: Bacillus subtilis [TaxId: 1423]

Probab=82.50  E-value=1.3  Score=28.59  Aligned_cols=64  Identities=11%  Similarity=0.115  Sum_probs=47.5

Q ss_pred             EEcCCCChhhHHHHHHHHHHHHHHHHcCcEEEEEeC--C--CHHHHHHHHHHcCCCeEEEEcCChhHHHHhCCCc
Q 028030          101 FYPADETPGCTKQACAFRDSYEKFKKAGAEVIGISG--D--DSSSHKAFAKKYRLPYTLLSDEGNKVRKEWGVPA  171 (215)
Q Consensus       101 f~~a~~C~~C~~~~~~l~~l~~~~~~~~v~vv~vs~--d--~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~g~~~  171 (215)
                      +|....|..|++.+.-|.+       +|+.+..+..  +  +.+++++|++..+.++.-+....++.++..+...
T Consensus         4 ly~~~~C~~~rka~~~L~~-------~~i~~~~~d~~~~p~s~~eL~~ll~~~~~~~~~lin~~~~~~k~l~~~~   71 (114)
T d1z3ea1           4 LYTSPSCTSCRKARAWLEE-------HEIPFVERNIFSEPLSIDEIKQILRMTEDGTDEIISTRSKVFQKLNVNV   71 (114)
T ss_dssp             EEECTTCHHHHHHHHHHHH-------TTCCEEEEETTTSCCCHHHHHHHHHTCSSCGGGTBCTTSHHHHHHCCCG
T ss_pred             EEcCCCCHHHHHHHHHHHH-------CCCCeEEEeeeccCCCHHHHHHHHHHhccCHHHHHHhcCchhhhcccch
Confidence            4448889999988665543       4777777765  3  5689999999998887666667778888877753

>d1j8yf2 c.37.1.10 (F:87-297) GTPase domain of the signal sequence recognition protein Ffh {Archaeon Acidianus ambivalens [TaxId: 2283]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal sequence recognition protein Ffh
species: Archaeon Acidianus ambivalens [TaxId: 2283]

Probab=81.73  E-value=4.9  Score=28.85  Aligned_cols=87  Identities=16%  Similarity=0.106  Sum_probs=52.3

Q ss_pred             CcEEEEEEcCCCChhhHHHHHHHHHHHHHHHHcCcEEEEEeCCC-----HHHHHHHHHHcCCCeEEEEcCChhH---HHH
Q 028030           95 KPVVVYFYPADETPGCTKQACAFRDSYEKFKKAGAEVIGISGDD-----SSSHKAFAKKYRLPYTLLSDEGNKV---RKE  166 (215)
Q Consensus        95 k~~ll~f~~a~~C~~C~~~~~~l~~l~~~~~~~~v~vv~vs~d~-----~~~~~~~~~~~~~~~~~~~d~~~~~---~~~  166 (215)
                      ++.+|.|.-.++++= ..   .+.+|+..++.+|..|..|+.|.     .+.++.|.+..++++....++..-.   .+.
T Consensus        11 ~p~vi~lvGptGvGK-TT---TiAKLA~~~~~~g~kV~lit~Dt~R~ga~eQL~~~a~~l~v~~~~~~~~~~~~~~~~~a   86 (211)
T d1j8yf2          11 IPYVIMLVGVQGTGK-AT---TAGKLAYFYKKKGFKVGLVGADVYRPAALEQLQQLGQQIGVPVYGEPGEKDVVGIAKRG   86 (211)
T ss_dssp             SSEEEEEECSCCC--------HHHHHHHHHHHTTCCEEEEECCCSSHHHHHHHHHHHHHHTCCEECCTTCCCHHHHHHHH
T ss_pred             CCEEEEEECCCCCCH-HH---HHHHHHHHHHHCCCceEEEEeeccccchhHHHHHhccccCcceeecccchhhhHHHHHH
Confidence            578888874555552 22   34445556666777877788875     3788999999999988776554321   111


Q ss_pred             hCCCccCCCCCCccEEEEEcCCCc
Q 028030          167 WGVPADFFGSLPGRQTYILDKNGV  190 (215)
Q Consensus       167 ~g~~~~~~g~~p~~~~~lid~~G~  190 (215)
                      .....     ......++||--|+
T Consensus        87 ~~~~~-----~~~~d~IlIDTaGr  105 (211)
T d1j8yf2          87 VEKFL-----SEKMEIIIVDTAGR  105 (211)
T ss_dssp             HHHHH-----HTTCSEEEEECCCS
T ss_pred             HHHhh-----ccCCceEEEecCCc
Confidence            11000     01115889998886