Citrus Sinensis ID: 028047

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210----
Protein Sequence
MDGSRQPLPLTTAYQRLELANVSPFTFLQAMFGLKCPIGVLAEEKILPLGKDISAVGICSFKNGIPEIKSCKDLPYFLSEKTKDLMVVDLVNRSKILFWSGIVLGSLSIGILGYAIVRNWNRWKDRQQRMSRQLTEAPSDDADSQIGSDEDVAGDIPDGQLCVVCLTRRRISAFNPCGHLVCCRRCAISVEREASPKCPVCRMTVRSSMRIYFS
Secondary Structure (PSIPRED)
cccccccccccEEEEcEEEcccccHHHHHHHHccccccHHHHHHHHcccccEEEEEEEEEEEccEEEEcccccccEEEccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccEEEcccccccEEEEccccEEccHHHHHHHHHcccccccccccccccEEEEccc
Secondary Structure Prediction (SSPRO)
cccccccccHHHHHHccccccccHHHHHHHHHccccccccEcHEEEcccccEEEEEEEEEEcccEEEEcccccccEEEccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHccccHHHcccccccccEEEEcccccEEEEEccccEEEcHHHHHHHcccccccccccHHHHHHEEEEEcc
Coil and Loop (DISEMBL)
mdgsrqplplttayqrlelanvspftFLQAMfglkcpigvlaeekilplgkdisavgicsfkngipeiksckdlpyflsektkdLMVVDLVNRSKILFWSGIVLGSLSIGILGYAIVRNWNRWKDRQQRMSRQlteapsddadsqigsdedvagdipdgqlCVVCLTRrrisafnpcghlvccrrcaisvereaspkcpvcrmtvrssmriyfs
Flexible Loop (DISEMBL)
MDGSRQPLPLTTAYQRLELANVSPFTFLQAMFGLKCPIGVLAEEKILPLGKDISAVGICSFkngipeiksckdLPYFLSEKTKDLMVVDLVNRSKILFWSGIVLGSLSIGILGYAIVRNWNRWKDRQQRMSRQLteapsddadsqIGSDedvagdipdGQLCVVCLTRRRisafnpcghlvCCRRCAIsvereaspkcpvcrmtvrssmriyfs
Low Complexity Region (SEG)
MDGSRQPLPLTTAYQRLELANVSPFTFLQAMFGLKCPIGVLAEEKILPLGKDISAVGICSFKNGIPEIKSCKDLPYFLSEKTKDLMVVDLVNRSKILFWSGIVLGSLSIGILGYAIVRNWNRWKDRQQRMSRQLTEAPSDDADSQIGSDEDVAGDIPDGQLCVVCLTRRRISAFNPCGHLVCCRRCAISVEREASPKCPVCRMTVRSSMRIYFS
Disordered region (IsUnstruct)
**********TTAYQRLELANVSPFTFLQAMFGLKCPIGVLAEEKILPLGKDISAVGICSFKNGIPEIKSCKDLPYFLSEKTKDLMVVDLVNRSKILFWSGIVLGSLSIGILGYAIVRNWNRWK******************************DIPDGQLCVVCLTRRRISAFNPCGHLVCCRRCAISVEREASPKCPVCRMTVR********
Disordered Region (DISOPRED)
*****QP*PLTTAYQRLELANVSPFTFLQAMFGLKCPIGVLAEEKILPLGKDISAVGICSFKNGIPEIKSCKDLPYFLSEKTKDLMVVDLVNRSKILFWSGIVLGSLSIGILGYAIVRNWNRWKD************************************CVVCLTRRRISAFNPCGHLVCCRRCAISVEREASPKCPVCRMTVRSSMRIYFS
Disordered Region (DISEMBL)
MDGSRQPLPLTTAYQRLELANVSPFTFLQAMFGLKCPIGVLAEEKILPLGKDISAVGICSFKNGIPEIKSCKDLPYFLSEKTKDLMVVDLVNRSKILFWSGIVLGSLSIGILGYAIVRNWNRWKD*********************GSDEDVAGDIPDGQLCVVCLTRRRISAFNPCGHLVCCRRCAISVEREASPKCPVCRMTVRSSMRIYFS
Disordered Region (DISPRO)
*****QPLPLTTAYQRLELANVSPFTFLQAMFGLKCPIGVLAEEKILPLGKDISAVGICSFKNGIPEIKSCKDLPYFLSEKTKDLMVVDLVNRSKILFWSGIVLGSLSIGILGYAIVRNWNRWKDRQQRMSRQLTEAP****************DIPDGQLCVVCLTRRRISAFNPCGHLVCCRRCAISVEREASPKCPVCRMTVRSSMRIYFS
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MDGSRQPLPLTTAYQRLELANVSPFTFLQAMFGLKCPIGVLAEEKILPLGKDISAVGICSFKNGIPEIKSCKDLPYFLSEKTKDLMVVDLVNRSKILFWSGIVLGSLSIGILGYAIVRNWNRWKDRQQRMSRQLTEAPSDDADSQIGSDEDVAGDIPDGQLCVVCLTRRRISAFNPCGHLVCCRRCAISVEREASPKCPVCRMTVRSSMRIYFS
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	214	2.2.26 [Sep-21-2011]
Q24306	438	Apoptosis 1 inhibitor OS=	yes	no	0.252	0.123	0.457	3e-08
P41436	275	Apoptosis inhibitor IAP O	N/A	no	0.252	0.196	0.440	5e-08
Q6NTT6	353	Mitochondrial ubiquitin l	N/A	no	0.915	0.555	0.252	5e-07
Q969V5	352	Mitochondrial ubiquitin l	yes	no	0.934	0.568	0.228	6e-07
Q4R7G8	352	Mitochondrial ubiquitin l	N/A	no	0.799	0.485	0.237	1e-06
Q62210	612	Baculoviral IAP repeat-co	yes	no	0.415	0.145	0.323	2e-06
A1E2V0	604	Baculoviral IAP repeat-co	yes	no	0.242	0.086	0.438	2e-06
O08863	600	Baculoviral IAP repeat-co	no	no	0.280	0.1	0.369	3e-06
Q90660	611	Inhibitor of apoptosis pr	no	no	0.280	0.098	0.383	3e-06
Q95M72	236	Baculoviral IAP repeat-co	no	no	0.289	0.262	0.358	4e-06

>sp|Q24306|IAP1_DROME Apoptosis 1 inhibitor OS=Drosophila melanogaster GN=th PE=1 SV=2

 Score = 58.9 bits (141), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 27/59 (45%), Positives = 35/59 (59%), Gaps = 5/59 (8%)

Query: 156 IPDGQLCVVCLTRRRISAFNPCGHLVCCRRCAISVEREASPKCPVCRMTVRSSMRIYFS 214
           IP+ +LC +C      +AF PCGH+V C +CA SV      KCP+CR      MR+YFS
Sbjct: 385 IPEEKLCKICYGAEYNTAFLPCGHVVACAKCASSVT-----KCPLCRKPFTDVMRVYFS 438

Anti-apoptotic protein which functions as a caspase regulator, using its E3 ubiquitin-protein ligase activity to smother caspase activity. Binds, ubiquitinates and inactivates initator caspase Nc, and effector caspases ICE and DCP-1. Acts as a NEDD8-E3 ubiquitin-protein ligase for ICE. Suppresses apoptosis by targeting the apoptosome for ubiquitination and inactivation. Plays an important role in cell motility. Overexpression suppresses rpr and W-dependent cell death in the eye. Interaction of th with Nc is required to suppress Nc-mediated cell death; th-mediated ubiquitination of Nc. Acts as a positive regulator of Wnt signaling.
Drosophila melanogaster (taxid: 7227)
EC: 6EC: .EC: 3EC: .EC: 2EC: .EC: -

>sp|P41436|IAP_GVCPM Apoptosis inhibitor IAP OS=Cydia pomonella granulosis virus (isolate Mexico/1963) GN=IAP PE=4 SV=1

 Score = 57.8 bits (138), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 26/59 (44%), Positives = 37/59 (62%), Gaps = 5/59 (8%)

Query: 156 IPDGQLCVVCLTRRRISAFNPCGHLVCCRRCAISVEREASPKCPVCRMTVRSSMRIYFS 214
           + D +LC +C     I  F PCGH+V C +CA+SV+     KCP+CR  V S +++YFS
Sbjct: 222 VEDSKLCKICYVEECIVCFVPCGHVVACAKCALSVD-----KCPMCRKIVTSVLKVYFS 275

Acts by blocking cellular apoptosis rather than by preventing viral stimulation of apoptosis.

Cydia pomonella (taxid: 82600)

>sp|Q6NTT6|MUL1_XENLA Mitochondrial ubiquitin ligase activator of nfkb 1 OS=Xenopus laevis GN=mul1 PE=2 SV=1

 Score = 54.7 bits (130), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 54/214 (25%), Positives = 93/214 (43%), Gaps = 18/214 (8%)

Query: 8   LPLTTAYQRLELANVSPFTFLQAMFGLKCPIGVLAEEKILPLGKDISAVGICSFKNGIPE 67
           L L T Y++   A  S    L      + P GV   E++L +G  I+ VG     N   +
Sbjct: 151 LGLETIYEKFHPAVQSFSNILGHYMTGERPKGVQETEEMLKIGATITGVGELVLDNKTIK 210

Query: 68  IKSCKD--LPYFLSEKTKDLMVVDLVNRSKILFWS--GIVLGSLSIGILGYAIVRNWNRW 123
           ++  KD  L Y  S   + L+    V   ++ +W    IV G  S   L + + R +  +
Sbjct: 211 LQPPKDGMLFYLSSMDYEGLLEKQEV---QMRWWRILSIVFGVASCITLFFILRRKYRHY 267

Query: 124 KDRQQ--RMSRQLTEAPSDDADSQIGSDEDVAGDIPDGQLCVVCLTRRRISAFNPCGHLV 181
           K++Q    + R+  E+ +     Q   +++   +      C +CL+  +   F  CGH+ 
Sbjct: 268 KEKQHLKNLQREFEESRARQRVQQEPQNKEEVQNP-----CSICLSTEKSCVFLECGHVC 322

Query: 182 CCRRCAISVEREASP-KCPVCRMTVRSSMRIYFS 214
            C  C  ++    SP KCP+CR  +   + +Y S
Sbjct: 323 SCISCYQAL---PSPKKCPICRNFIDRIVPLYNS 353

E3 ubiquitin-protein ligase that plays a role in the control of mitochondrial morphology. Promotes mitochondrial fragmentation and influences mitochondrial localization. Inhibits cell growth. E3 ubiquitin ligases accept ubiquitin from an E2 ubiquitin-conjugating enzyme in the form of a thioester and then directly transfer the ubiquitin to targeted substrates.

Xenopus laevis (taxid: 8355)

EC: 6

EC: .

EC: 3

EC: .

EC: 2

EC: .

EC: -

>sp|Q969V5|MUL1_HUMAN Mitochondrial ubiquitin ligase activator of NFKB 1 OS=Homo sapiens GN=MUL1 PE=1 SV=1

 Score = 54.3 bits (129), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 48/210 (22%), Positives = 90/210 (42%), Gaps = 10/210 (4%)

Query: 8   LPLTTAYQRLELANVSPFTFLQAMFGLKCPIGVLAEEKILPLGKDISAVGICSFKNGIPE 67
           L L T Y++   +  S    +      + P G+   E++L +G  ++ VG     N    
Sbjct: 150 LGLETVYEKFHPSIQSFTDVIGHYISGERPKGIQETEEMLKVGATLTGVGELVLDNNSVR 209

Query: 68  IKSCKD-LPYFLSEKTKDLMVVDLVNRSKILFWS--GIVLGSLSIGILGYAIVRNWNRWK 124
           ++  K  + Y+LS +  D ++      S +  W    +V G  +   L + I+R   ++ 
Sbjct: 210 LQPPKQGMQYYLSSQDFDSLLQR--QESSVRLWKVLALVFGFATCATL-FFILRK--QYL 264

Query: 125 DRQQRMSRQLTEAPSDDADSQIGSDEDVAGDIPDGQLCVVCLTRRRISAFNPCGHLVCCR 184
            RQ+R+  +  +    + ++Q+ S             CVVCL+  +   F  CGH+  C 
Sbjct: 265 QRQERLRLKQMQEEFQEHEAQLLSRAKPEDRESLKSACVVCLSSFKSCVFLECGHVCSCT 324

Query: 185 RCAISVEREASPKCPVCRMTVRSSMRIYFS 214
            C  ++      KCP+CR  +   + +Y S
Sbjct: 325 ECYRALPE--PKKCPICRQAITRVIPLYNS 352

Exhibits weak E3 ubiquitin-protein ligase activity, but preferentially acts as a SUMO E3 ligase at physiological concentrations. Plays a role in the control of mitochondrial morphology. Promotes mitochondrial fragmentation and influences mitochondrial localization. Inhibits cell growth. When overexpressed, activates JNK through MAP3K7/TAK1 and induces caspase-dependent apoptosis. E3 ubiquitin ligases accept ubiquitin from an E2 ubiquitin-conjugating enzyme in the form of a thioester and then directly transfer the ubiquitin to targeted substrates.

Homo sapiens (taxid: 9606)

EC: 6

EC: .

EC: 3

EC: .

EC: 2

EC: .

EC: -

>sp|Q4R7G8|MUL1_MACFA Mitochondrial ubiquitin ligase activator of NFKB 1 OS=Macaca fascicularis GN=MUL1 PE=2 SV=1

 Score = 53.1 bits (126), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 43/181 (23%), Positives = 80/181 (44%), Gaps = 10/181 (5%)

Query: 37  PIGVLAEEKILPLGKDISAVGICSFKNGIPEIKSCKD-LPYFLSEKTKDLMVVDLVNRSK 95
           P G+   E++L +G  ++ VG     N    ++  K  + Y+LS +  D ++      S 
Sbjct: 179 PKGIQETEEMLKVGATLTGVGELVLDNNSVRLQPPKQGMQYYLSSQDFDSLLQR--QESS 236

Query: 96  ILFWS--GIVLGSLSIGILGYAIVRNWNRWKDRQQRMSRQLTEAPSDDADSQIGSDEDVA 153
           +  W    +V G  +   L + I+R   ++  RQ+R+  +  +    + ++Q+ S     
Sbjct: 237 VRLWKVLALVFGFATCATL-FFILRK--QYLQRQERLRLKQMQEEFQEHEAQLLSRAKPE 293

Query: 154 GDIPDGQLCVVCLTRRRISAFNPCGHLVCCRRCAISVEREASPKCPVCRMTVRSSMRIYF 213
                   CVVCL+  +   F  CGH+  C  C  ++      KCP+CR  +   + +Y 
Sbjct: 294 DRESLKSACVVCLSSFKSCVFLECGHVCSCTECYRALPE--PKKCPICRQAITRVIPLYN 351

Query: 214 S 214
           S
Sbjct: 352 S 352

Exhibits weak E3 ubiquitin-protein ligase activity, but preferentially acts as a SUMO E3 ligase at physiological concentrations. Plays a role in the control of mitochondrial morphology. Promotes mitochondrial fragmentation and influences mitochondrial localization. Inhibits cell growth. When overexpressed, activates JNK through MAP3K7/TAK1 and induces caspase-dependent apoptosis. E3 ubiquitin ligases accept ubiquitin from an E2 ubiquitin-conjugating enzyme in the form of a thioester and then directly transfer the ubiquitin to targeted substrates.

Macaca fascicularis (taxid: 9541)

EC: 6

EC: .

EC: 3

EC: .

EC: 2

EC: .

EC: -

>sp|Q62210|BIRC2_MOUSE Baculoviral IAP repeat-containing protein 2 OS=Mus musculus GN=Birc2 PE=1 SV=1

 Score = 52.8 bits (125), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 33/102 (32%), Positives = 51/102 (50%), Gaps = 13/102 (12%)

Query: 121 NRWKDRQQRMSRQLTEAPSDDADSQIGSDEDVAGDIPDGQL--------CVVCLTRRRIS 172
           N +K+  + +   L E    + + +    EDV+G   + QL        C VC+ R    
Sbjct: 516 NIFKNSLKEIDSTLYENLFVEKNMKYIPTEDVSGLSLEEQLRRLQEERTCKVCMDREVSI 575

Query: 173 AFNPCGHLVCCRRCAISVEREASPKCPVCRMTVRSSMRIYFS 214
            F PCGHLV C+ CA S+      KCP+CR T++ ++R + S
Sbjct: 576 VFIPCGHLVVCQECAPSLR-----KCPICRGTIKGTVRTFLS 612

Multi-functional protein which regulates not only caspases and apoptosis, but also modulates inflammatory signaling and immunity, mitogenic kinase signaling, and cell proliferation, as well as cell invasion and metastasis. Acts as an E3 ubiquitin-protein ligase regulating NF-kappa-B signaling and regulates both canonical and non-canonical NF-kappa-B signaling by acting in opposite directions: acts as a positive regulator of the canonical pathway and suppresses constitutive activation of non-canonical NF-kappa-B signaling. The target proteins for its E3 ubiquitin-protein ligase activity include: RIPK1, RIPK2, RIPK3, RIPK4, CASP3, CASP7, CASP8, TRAF2, DIABLO/SMAC, MAP3K14/NIK, MAP3K5/ASK1, IKBKG/NEMO and MXD1/MAD1. Can also function as an E3 ubiquitin-protein ligase of the NEDD8 conjugation pathway, targeting effector caspases for neddylation and inactivation. Acts as an important regulator of innate immune signaling via regulation of Toll-like receptors (TLRs), Nodlike receptors (NLRs) and RIG-I like receptors (RLRs), collectively referred to as pattern recognition receptors (PRRs). Protects cells from spontaneous formation of the ripoptosome, a large multi-protein complex that has the capability to kill cancer cells in a caspase-dependent and caspase-independent manner. Suppresses ripoptosome formation by ubiquitinating RIPK1 and CASP8. Can stimulate the transcriptional activity of E2F1. Plays a role in the modulation of the cell cycle.

Mus musculus (taxid: 10090)

EC: 6

EC: .

EC: 3

EC: .

EC: 2

EC: .

EC: -

>sp|A1E2V0|BIRC3_CANFA Baculoviral IAP repeat-containing protein 3 OS=Canis familiaris GN=BIRC3 PE=2 SV=1

 Score = 52.4 bits (124), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 25/57 (43%), Positives = 34/57 (59%), Gaps = 5/57 (8%)

Query: 158 DGQLCVVCLTRRRISAFNPCGHLVCCRRCAISVEREASPKCPVCRMTVRSSMRIYFS 214
           + + C VC+ +     F PCGHLV CR CA S+      KCP+CR TVR ++R + S
Sbjct: 553 EERTCKVCMDKEVSIVFIPCGHLVVCRDCAPSLR-----KCPICRGTVRGTVRTFLS 604

Multi-functional protein which regulates not only caspases and apoptosis, but also modulates inflammatory signaling and immunity, mitogenic kinase signaling and cell proliferation, as well as cell invasion and metastasis. Acts as an E3 ubiquitin-protein ligase regulating NF-kappa-B signaling and regulates both canonical and non-canonical NF-kappa-B signaling by acting in opposite directions: acts as a positive regulator of the canonical pathway and suppresses constitutive activation of non-canonical NF-kappa-B signaling. The target proteins for its E3 ubiquitin-protein ligase activity include: RIPK1, RIPK2, RIPK3, RIPK4, CASP3, CASP7, CASP8, TRAF1, and BCL10. Acts as an important regulator of innate immune signaling via regulation of Toll-like receptors (TLRs), Nodlike receptors (NLRs) and RIG-I like receptors (RLRs), collectively referred to as pattern recognition receptors (PRRs). Protects cells from spontaneous formation of the ripoptosome, a large multi-protein complex that has the capability to kill cancer cells in a caspase-dependent and caspase-independent manner. Suppresses ripoptosome formation by ubiquitinating RIPK1 and CASP8.

Canis familiaris (taxid: 9615)

EC: 6

EC: .

EC: 3

EC: .

EC: 2

EC: .

EC: -

>sp|O08863|BIRC3_MOUSE Baculoviral IAP repeat-containing protein 3 OS=Mus musculus GN=Birc3 PE=1 SV=2

 Score = 52.4 bits (124), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 24/65 (36%), Positives = 38/65 (58%), Gaps = 5/65 (7%)

Query: 150 EDVAGDIPDGQLCVVCLTRRRISAFNPCGHLVCCRRCAISVEREASPKCPVCRMTVRSSM 209
           E+    + + ++C VC+ R     F PCGHLV C+ CA S+      KCP+CR T++ ++
Sbjct: 541 EEQLRKLQEERMCKVCMDREVSIVFIPCGHLVVCKDCAPSLR-----KCPICRGTIKGTV 595

Query: 210 RIYFS 214
           R + S
Sbjct: 596 RTFLS 600

Multi-functional protein which regulates not only caspases and apoptosis, but also modulates inflammatory signaling and immunity, mitogenic kinase signaling and cell proliferation, as well as cell invasion and metastasis. Acts as an E3 ubiquitin-protein ligase regulating NF-kappa-B signaling and regulates both canonical and non-canonical NF-kappa-B signaling by acting in opposite directions: acts as a positive regulator of the canonical pathway and suppresses constitutive activation of non-canonical NF-kappa-B signaling. The target proteins for its E3 ubiquitin-protein ligase activity include: RIPK1, RIPK2, RIPK3, RIPK4, CASP3, CASP7, CASP8, TRAF1, and BCL10. Acts as an important regulator of innate immune signaling via regulation of Toll-like receptors (TLRs), Nodlike receptors (NLRs) and RIG-I like receptors (RLRs), collectively referred to as pattern recognition receptors (PRRs). Protects cells from spontaneous formation of the ripoptosome, a large multi-protein complex that has the capability to kill cancer cells in a caspase-dependent and caspase-independent manner. Suppresses ripoptosome formation by ubiquitinating RIPK1 and CASP8.

Mus musculus (taxid: 10090)

EC: 6

EC: .

EC: 3

EC: .

EC: 2

EC: .

EC: -

>sp|Q90660|BIR_CHICK Inhibitor of apoptosis protein OS=Gallus gallus GN=ITA PE=2 SV=1

 Score = 52.0 bits (123), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 28/73 (38%), Positives = 40/73 (54%), Gaps = 13/73 (17%)

Query: 150 EDVAGDIPDGQL--------CVVCLTRRRISAFNPCGHLVCCRRCAISVEREASPKCPVC 201
           EDV+G   + QL        C VC+ +     F PCGHLV C+ CA S+      KCP+C
Sbjct: 544 EDVSGLPMEEQLRRLQEERTCKVCMDKEVSIVFIPCGHLVVCKECAPSLR-----KCPIC 598

Query: 202 RMTVRSSMRIYFS 214
           R T++ ++R + S
Sbjct: 599 RGTIKGTVRTFLS 611

Apoptotic suppressor.

Gallus gallus (taxid: 9031)

>sp|Q95M72|BIRC8_PANTR Baculoviral IAP repeat-containing protein 8 OS=Pan troglodytes GN=BIRC8 PE=2 SV=1

 Score = 51.6 bits (122), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 24/67 (35%), Positives = 37/67 (55%), Gaps = 5/67 (7%)

Query: 148 SDEDVAGDIPDGQLCVVCLTRRRISAFNPCGHLVCCRRCAISVEREASPKCPVCRMTVRS 207
           S E+    + D +LC +C+ R     F PCGHLV C++CA +V+R     CP+C   +  
Sbjct: 175 SPEEPLRRLQDEKLCKICMDRHIAVVFIPCGHLVTCKQCAEAVDR-----CPMCSAVIDF 229

Query: 208 SMRIYFS 214
             R++ S
Sbjct: 230 KQRVFMS 236

Protects against apoptosis mediated by BAX.

Pan troglodytes (taxid: 9598)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	214
225442119	391	PREDICTED: mitochondrial ubiquitin ligas	0.990	0.542	0.711	2e-87
449447892	389	PREDICTED: mitochondrial ubiquitin ligas	0.976	0.537	0.631	3e-77
224070805	391	predicted protein [Populus trichocarpa]	0.985	0.539	0.641	2e-76
356504268	388	PREDICTED: mitochondrial ubiquitin ligas	0.985	0.543	0.626	1e-74
224054081	390	predicted protein [Populus trichocarpa]	0.976	0.535	0.643	4e-74
356558912	383	PREDICTED: mitochondrial ubiquitin ligas	0.985	0.550	0.621	8e-74
255560625	387	ubiquitin-protein ligase, putative [Rici	0.985	0.545	0.638	3e-73
356567748	387	PREDICTED: mitochondrial ubiquitin ligas	0.985	0.545	0.626	3e-73
357514013	383	Baculoviral IAP repeat-containing protei	0.985	0.550	0.612	2e-71
18404810	383	E3 ubiquitin ligase-like protein [Arabid	0.962	0.537	0.574	1e-66

>gi|225442119|ref|XP_002274016.1| PREDICTED: mitochondrial ubiquitin ligase activator of nfkb 1 [Vitis vinifera] gi|297743001|emb|CBI35868.3| unnamed protein product [Vitis vinifera]

 Score =  327 bits (837), Expect = 2e-87,   Method: Compositional matrix adjust.
 Identities = 153/215 (71%), Positives = 183/215 (85%), Gaps = 3/215 (1%)

Query: 1   MDGSRQPLPLTTAYQRLELANVSPFTFLQAMFGLKCPIGVLAEEKILPLGKDISAVGICS 60
           MDGSR PLPLTT Y +L+  N SP+TFLQA+FG   P+G+L EEK+LPLGK+I+AVGICS
Sbjct: 179 MDGSRHPLPLTTVYHQLQPVNASPYTFLQALFGHDYPVGLLDEEKLLPLGKEITAVGICS 238

Query: 61  FKNGIPEIKSCKDLPYFLSEKTKDLMVVDLVNRSKILFWSGIVLGSLSIGILGYAIVRNW 120
            KNGIPEIKSCKDLPYFLSE +KD MVVDLV +SK+LFWSG++LGS+SIG+LGYA+VRNW
Sbjct: 239 LKNGIPEIKSCKDLPYFLSEMSKDQMVVDLVFKSKVLFWSGVILGSVSIGVLGYAVVRNW 298

Query: 121 NRWKD-RQQRMSRQLTEAPSDDADSQIGSDEDVAGDIPDGQLCVVCLTRRRISAFNPCGH 179
           NRWK+ RQQR  R  ++A +DD D+QI   ED AGD+PDG+LCV+CL RR+ SAF PCGH
Sbjct: 299 NRWKEWRQQRGVRPPSQAVTDDTDTQIA--EDDAGDVPDGELCVICLMRRKRSAFVPCGH 356

Query: 180 LVCCRRCAISVEREASPKCPVCRMTVRSSMRIYFS 214
           LVCC+RCA+SVERE SPKCPVCR  +RSS+RIY S
Sbjct: 357 LVCCQRCALSVERELSPKCPVCRQIIRSSVRIYGS 391

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449447892|ref|XP_004141700.1| PREDICTED: mitochondrial ubiquitin ligase activator of nfkb 1-like [Cucumis sativus] gi|449480528|ref|XP_004155921.1| PREDICTED: mitochondrial ubiquitin ligase activator of nfkb 1-like [Cucumis sativus]

 Score =  293 bits (750), Expect = 3e-77,   Method: Compositional matrix adjust.
 Identities = 137/217 (63%), Positives = 169/217 (77%), Gaps = 8/217 (3%)

Query: 1   MDGSRQPLPLTTAYQRLELANVSPFTFLQAMFGLKCPIGVLAEEKILPLGKDISAVGICS 60
           M+GSR PLPLTT Y +L+    +P+TFLQA+FG + P+GVL EEKILPLGK+ISAVGICS
Sbjct: 174 MEGSRHPLPLTTVYHQLQPVCATPYTFLQAVFGHEYPVGVLDEEKILPLGKNISAVGICS 233

Query: 61  FKNGIPEIKSCKDLPYFLSEKTKDLMVVDLVNRSKILFWSGIVLGSLSIGILGYAIVRNW 120
           F+NG+P IKSC D P+FL E TKD M++DLV ++K LFWS IVLGSL++GILGY+  RNW
Sbjct: 234 FENGVPVIKSCSDFPHFLCEMTKDQMILDLVFKTKFLFWSSIVLGSLTVGILGYSAARNW 293

Query: 121 NRWKDRQQRMSRQLTEA-----PSDDADSQIGSDEDVAGDIPDGQLCVVCLTRRRISAFN 175
           NRWK  Q R  RQL  +     P D+  S +  DE ++  +PDGQLCV+CL RR+ SAF 
Sbjct: 294 NRWK--QWRQHRQLQNSRNDSVPDDELSSHVPDDE-LSSHVPDGQLCVICLMRRKRSAFI 350

Query: 176 PCGHLVCCRRCAISVEREASPKCPVCRMTVRSSMRIY 212
           PCGHLVCC RCA+SVERE+SPKCP+CR  +RSS+RIY
Sbjct: 351 PCGHLVCCERCAVSVERESSPKCPICRQQIRSSVRIY 387

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224070805|ref|XP_002303243.1| predicted protein [Populus trichocarpa] gi|222840675|gb|EEE78222.1| predicted protein [Populus trichocarpa]

 Score =  290 bits (743), Expect = 2e-76,   Method: Compositional matrix adjust.
 Identities = 136/212 (64%), Positives = 168/212 (79%), Gaps = 1/212 (0%)

Query: 1   MDGSRQPLPLTTAYQRLELANVSPFTFLQAMFGLKCPIGVLAEEKILPLGKDISAVGICS 60
           MDGS  PLPLT  Y +L+    S +TF+QA+FG + P+GVL EEKILPLGK ISAVGIC+
Sbjct: 179 MDGSSHPLPLTMVYHQLQPIVASRYTFIQALFGHEYPVGVLHEEKILPLGKCISAVGICN 238

Query: 61  FKNGIPEIKSCKDLPYFLSEKTKDLMVVDLVNRSKILFWSGIVLGSLSIGILGYAIVRNW 120
            K+GIPEIKSCK+LPYFL++ TKD MV DL  ++KIL WSGIVLGSLSIG+LG+A++RNW
Sbjct: 239 SKDGIPEIKSCKELPYFLADMTKDEMVADLAFKAKILLWSGIVLGSLSIGVLGFAVMRNW 298

Query: 121 NRWKDRQQRMSRQLTEAPSDDADSQIGSDEDVAGDIPDGQLCVVCLTRRRISAFNPCGHL 180
           N+WK  +QR S+Q     SD+  SQI  +ED AGD+P+GQLCV+CL RRR +AF PCGHL
Sbjct: 299 NKWKAWRQRRSQQPIHTTSDEDVSQIDDNED-AGDVPEGQLCVICLMRRRRAAFIPCGHL 357

Query: 181 VCCRRCAISVEREASPKCPVCRMTVRSSMRIY 212
            CC  CA+SVE E SPKCP+CR  VR+S+RI+
Sbjct: 358 ACCHTCAVSVESEVSPKCPLCRQAVRNSIRIF 389

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356504268|ref|XP_003520919.1| PREDICTED: mitochondrial ubiquitin ligase activator of nfkb 1-like [Glycine max]

 Score =  285 bits (728), Expect = 1e-74,   Method: Compositional matrix adjust.
 Identities = 134/214 (62%), Positives = 167/214 (78%), Gaps = 3/214 (1%)

Query: 1   MDGSRQPLPLTTAYQRLELANVSPFTFLQAMFGLKCPIGVLAEEKILPLGKDISAVGICS 60
           MDGSR PLPL+T Y +L+    SP+TFLQA+FG + P+G+L EEKILPLGK+I+AVG+CS
Sbjct: 178 MDGSRHPLPLSTVYHKLQPITASPYTFLQALFGHEYPVGLLDEEKILPLGKNITAVGLCS 237

Query: 61  FKNGIPEIKSCKDLPYFLSEKTKDLMVVDLVNRSKILFWSGIVLGSLSIGILGYAIVRNW 120
            KNGI EIKSCKDLPYFLS+ +KD M+VDL +++KILFW GI LGS+S+G+LGYA+VRNW
Sbjct: 238 LKNGIAEIKSCKDLPYFLSDLSKDQMIVDLSSKTKILFWGGIALGSMSVGVLGYAVVRNW 297

Query: 121 NRWKDRQQRMSRQLTEAPSDDADSQIGSDEDVAGDIPDGQLCVVCLTRRRISAFNPCGHL 180
           N+WK  +Q+   Q       D + Q+   +D   D+PDGQLCV+CL RRR S F PCGHL
Sbjct: 298 NKWKQWKQQRQLQQQRQAVSDVEPQM---DDEIEDVPDGQLCVICLMRRRRSVFIPCGHL 354

Query: 181 VCCRRCAISVEREASPKCPVCRMTVRSSMRIYFS 214
           VCC+ CAISVERE +PKCPVCR  +R S+RIY S
Sbjct: 355 VCCQGCAISVEREVAPKCPVCRQEIRDSVRIYES 388

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224054081|ref|XP_002298092.1| predicted protein [Populus trichocarpa] gi|222845350|gb|EEE82897.1| predicted protein [Populus trichocarpa]

 Score =  283 bits (723), Expect = 4e-74,   Method: Compositional matrix adjust.
 Identities = 137/213 (64%), Positives = 166/213 (77%), Gaps = 4/213 (1%)

Query: 1   MDGSRQPLPLTTAYQRLELANVSPFTFLQAMFGLKCPIGVLAEEKILPLGKDISAVGICS 60
           M GS  PLPLTT Y +L+    S +TF+QA+FG + P+GVL EEKILPLGK ISAVGIC+
Sbjct: 179 MVGSAHPLPLTTVYHQLQRIAASRYTFIQALFGHEYPVGVLHEEKILPLGKCISAVGICN 238

Query: 61  FKNGIPEIKSCKDLPYFLSEKTKDLMVVDLVNRSKILFWSGIVLGSLSIGILGYAIVRNW 120
            K GIPEIKSCKDLPYFL++ TKD MV DL  ++KI  WSGI LGSLSIG+LG+A++RNW
Sbjct: 239 SKKGIPEIKSCKDLPYFLADITKDQMVADLAFKAKIQLWSGIFLGSLSIGVLGFAVMRNW 298

Query: 121 NRWKDRQQRMSRQLTEAPSDDAD-SQIGSDEDVAGDIPDGQLCVVCLTRRRISAFNPCGH 179
           N+W+  +QR S  L    + DAD S+I  DED AGD+PDGQLCV+CLTRRR SAF PCGH
Sbjct: 299 NKWQAWRQRHS-HLPNHTTIDADVSRI--DEDEAGDVPDGQLCVICLTRRRRSAFIPCGH 355

Query: 180 LVCCRRCAISVEREASPKCPVCRMTVRSSMRIY 212
           L CC  CAISVE E SPKCP+CR  +R+S+R++
Sbjct: 356 LACCHFCAISVESEVSPKCPLCRQAIRNSIRVF 388

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356558912|ref|XP_003547746.1| PREDICTED: mitochondrial ubiquitin ligase activator of NFKB 1-like [Glycine max]

 Score =  282 bits (721), Expect = 8e-74,   Method: Compositional matrix adjust.
 Identities = 133/214 (62%), Positives = 164/214 (76%), Gaps = 3/214 (1%)

Query: 1   MDGSRQPLPLTTAYQRLELANVSPFTFLQAMFGLKCPIGVLAEEKILPLGKDISAVGICS 60
           MDGSR PLPLTT Y +L+  N SP+TFLQA+FG + P+G+L EEKILPLGKDI+AVG CS
Sbjct: 173 MDGSRHPLPLTTVYHKLQPINASPYTFLQALFGHEYPVGLLDEEKILPLGKDITAVGHCS 232

Query: 61  FKNGIPEIKSCKDLPYFLSEKTKDLMVVDLVNRSKILFWSGIVLGSLSIGILGYAIVRNW 120
            KNGI EIKSCKD+PYFLS+ +KD M+VDL  ++KILFW GI LGS+S+G+LGYA++RNW
Sbjct: 233 LKNGIAEIKSCKDIPYFLSDLSKDQMIVDLSIKAKILFWGGISLGSMSVGVLGYAVLRNW 292

Query: 121 NRWKDRQQRMSRQLTEAPSDDADSQIGSDEDVAGDIPDGQLCVVCLTRRRISAFNPCGHL 180
            +WK  + +   Q       DA+ Q+   +D   D+PDGQLCV+CL RRR S F PCGHL
Sbjct: 293 IKWKRWKVQRQLQQQRQAVSDAEPQV---DDEIEDVPDGQLCVICLMRRRRSVFIPCGHL 349

Query: 181 VCCRRCAISVEREASPKCPVCRMTVRSSMRIYFS 214
           VCC+ CAISVERE +PKCPVCR  +R S+R Y S
Sbjct: 350 VCCQGCAISVEREVAPKCPVCRQEIRDSVRTYES 383

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255560625|ref|XP_002521326.1| ubiquitin-protein ligase, putative [Ricinus communis] gi|223539404|gb|EEF40994.1| ubiquitin-protein ligase, putative [Ricinus communis]

 Score =  280 bits (715), Expect = 3e-73,   Method: Compositional matrix adjust.
 Identities = 136/213 (63%), Positives = 167/213 (78%), Gaps = 2/213 (0%)

Query: 1   MDGSRQPLPLTTAYQRLELANVSPFTFLQAMFGLKCPIGVLAEEKILPLGKDISAVGICS 60
           +DGSR PLPLTT Y +L+  + SP+TFLQA FG + P+G+L EEKILPLGK+I+AVG+C 
Sbjct: 174 LDGSRHPLPLTTVYHQLQPIDASPYTFLQAFFGYEYPVGLLDEEKILPLGKEINAVGLCG 233

Query: 61  FKNGIPEIKSCKDLPYFLSEKTKDLMVVDLVNRSKILFWSGIVLGSLSIGILGYAIVRNW 120
            KNGI EI SCKDLP+FLS+ +K+ MVVDL  ++K+LFWSG+VLGS SI ILGYA VRNW
Sbjct: 234 SKNGILEITSCKDLPFFLSDLSKEQMVVDLAFKTKVLFWSGVVLGSFSICILGYAAVRNW 293

Query: 121 NRWKDRQQRMSRQLTEAPSDDAD-SQIGSDEDVAGDIPDGQLCVVCLTRRRISAFNPCGH 179
           NRWK  +Q+   Q       DAD SQI  +E+   D+PDGQLCV+CL RRR +AF PCGH
Sbjct: 294 NRWKAWRQQRQFQQQSNSVSDADVSQIDVEEETV-DVPDGQLCVICLMRRRRAAFIPCGH 352

Query: 180 LVCCRRCAISVEREASPKCPVCRMTVRSSMRIY 212
           LVCC+ CAISVERE SPKCP+CR  VR+S+RI+
Sbjct: 353 LVCCQICAISVEREVSPKCPLCRQAVRNSIRIF 385

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356567748|ref|XP_003552078.1| PREDICTED: mitochondrial ubiquitin ligase activator of nfkb 1-like [Glycine max]

 Score =  280 bits (715), Expect = 3e-73,   Method: Compositional matrix adjust.
 Identities = 134/214 (62%), Positives = 164/214 (76%), Gaps = 3/214 (1%)

Query: 1   MDGSRQPLPLTTAYQRLELANVSPFTFLQAMFGLKCPIGVLAEEKILPLGKDISAVGICS 60
           MDGSR PLPLTT Y +L+    SP+TFLQA+FG + P+G+L EEKILPLGKDI+AVG+CS
Sbjct: 177 MDGSRHPLPLTTVYHKLQPITASPYTFLQALFGHEYPVGLLDEEKILPLGKDITAVGLCS 236

Query: 61  FKNGIPEIKSCKDLPYFLSEKTKDLMVVDLVNRSKILFWSGIVLGSLSIGILGYAIVRNW 120
            KNGI EIKSCK LPYFLS+ +KD M++DL  ++KILFW GI LGS+S+G+LGYA+VRNW
Sbjct: 237 LKNGIAEIKSCKYLPYFLSDLSKDQMIMDLSIKTKILFWGGIALGSMSVGVLGYAVVRNW 296

Query: 121 NRWKDRQQRMSRQLTEAPSDDADSQIGSDEDVAGDIPDGQLCVVCLTRRRISAFNPCGHL 180
           N+WK  +Q+   Q       D + Q+   +D   D PDGQLCV+CL RRR S F PCGHL
Sbjct: 297 NKWKQWKQQRQLQQQRQAVSDVEPQM---DDEIEDAPDGQLCVICLMRRRRSVFIPCGHL 353

Query: 181 VCCRRCAISVEREASPKCPVCRMTVRSSMRIYFS 214
           VCC+ CAISVERE +PKCPVCR  +R S+RIY S
Sbjct: 354 VCCQGCAISVEREVAPKCPVCRQEIRDSVRIYES 387

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357514013|ref|XP_003627295.1| Baculoviral IAP repeat-containing protein [Medicago truncatula] gi|66947626|emb|CAJ00009.1| C3HC4 zinc finger containing protein [Medicago truncatula] gi|355521317|gb|AET01771.1| Baculoviral IAP repeat-containing protein [Medicago truncatula]

 Score =  274 bits (700), Expect = 2e-71,   Method: Compositional matrix adjust.
 Identities = 131/214 (61%), Positives = 167/214 (78%), Gaps = 3/214 (1%)

Query: 1   MDGSRQPLPLTTAYQRLELANVSPFTFLQAMFGLKCPIGVLAEEKILPLGKDISAVGICS 60
           MDGS  PLPLTT Y RL+  N  P+TFLQA+FG + P+G+L EEKILPLGKD+SAVG+CS
Sbjct: 173 MDGSSHPLPLTTVYHRLQPVNPPPYTFLQALFGHEYPVGLLDEEKILPLGKDVSAVGLCS 232

Query: 61  FKNGIPEIKSCKDLPYFLSEKTKDLMVVDLVNRSKILFWSGIVLGSLSIGILGYAIVRNW 120
            +NGI EIK+C DLPY+LS+ +KD M+VDL  ++K+LFWSGI+LGS+S+GI+GYA+VRNW
Sbjct: 233 LRNGIAEIKACNDLPYYLSDLSKDQMIVDLSFKTKLLFWSGILLGSMSVGIIGYAVVRNW 292

Query: 121 NRWKDRQQRMSRQLTEAPSDDADSQIGSDEDVAGDIPDGQLCVVCLTRRRISAFNPCGHL 180
           N+WK  Q +  RQL +      +    +D+++  D+PDGQLCV+CL RRR S F PCGHL
Sbjct: 293 NKWK--QWKQQRQLQQRRQQPIEPVPPTDDEIE-DVPDGQLCVICLMRRRRSVFIPCGHL 349

Query: 181 VCCRRCAISVEREASPKCPVCRMTVRSSMRIYFS 214
           VCC+ CAISVE E +PKCPVCR  VR S+RI+ S
Sbjct: 350 VCCQGCAISVESEVAPKCPVCRQEVRDSVRIFES 383

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|18404810|ref|NP_564653.1| E3 ubiquitin ligase-like protein [Arabidopsis thaliana] gi|4587558|gb|AAD25789.1|AC006577_25 Contains similarity to gb|U45880 X-linked inhibitor of apotosis protein from Homo sapiens and contains PF|00097 Zinc finger C3HC4 (Ring finger) domain [Arabidopsis thaliana] gi|16604354|gb|AAL24183.1| At1g54150/F15I1_32 [Arabidopsis thaliana] gi|23505911|gb|AAN28815.1| At1g54150/F15I1_32 [Arabidopsis thaliana] gi|332194934|gb|AEE33055.1| E3 ubiquitin ligase-like protein [Arabidopsis thaliana]

 Score =  258 bits (658), Expect = 1e-66,   Method: Compositional matrix adjust.
 Identities = 123/214 (57%), Positives = 158/214 (73%), Gaps = 8/214 (3%)

Query: 1   MDGSRQPLPLTTAYQRLELANVSPFTFLQAMFGLKCPIGVLAEEKILPLGKDISAVGICS 60
           MDGSRQPLPLTT Y RL+  N S   FLQA      P+G+L  EKILP GKDI+AVGI S
Sbjct: 178 MDGSRQPLPLTTVYNRLQPINSS---FLQAFLYPDYPVGLLDIEKILPPGKDITAVGIYS 234

Query: 61  FKNGIPEIKSCKDLPYFLSEKTKDLMVVDLVNRSKILFWSGIVLGSLSIGILGYAIVRNW 120
           F NG+PEIKSC+DLPYFLSE TKD M+ DL+ ++  +F   ++LG +S+GIL YA VR W
Sbjct: 235 FNNGVPEIKSCQDLPYFLSEMTKDKMIEDLMEQTNFIFLGSVILGIVSVGILSYAAVRTW 294

Query: 121 NRWKDRQQRMSRQLTEAPSDDADSQIGSDEDVAGDIPDGQLCVVCLTRRRISAFNPCGHL 180
           N+WK  Q    R+L + P+   DS +  + + A +IPDG+LCV+C++RRR+ AF PCGH+
Sbjct: 295 NKWK--QWNHQRELPQRPN---DSVVDDEPEDADEIPDGELCVICVSRRRVPAFIPCGHV 349

Query: 181 VCCRRCAISVEREASPKCPVCRMTVRSSMRIYFS 214
           VCCRRCA +VERE +PKCPVC  ++R SMR+Y+S
Sbjct: 350 VCCRRCASTVERELNPKCPVCLQSIRGSMRVYYS 383

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	214
TAIR|locus:2014405	383	SPL2 "SP1-like 2" [Arabidopsis	0.962	0.537	0.574	4.7e-64
TAIR|locus:2202882	338	ZCF61 [Arabidopsis thaliana (t	0.911	0.576	0.273	6.2e-14
UNIPROTKB|E1BGD5	350	MUL1 "Uncharacterized protein"	0.911	0.557	0.267	3.3e-12
MGI|MGI:1915600	352	Mul1 "mitochondrial ubiquitin	0.925	0.562	0.25	3.3e-11
RGD|1309944	352	Mul1 "mitochondrial E3 ubiquit	0.925	0.562	0.25	3.5e-10
TAIR|locus:4515103444	178	AT4G24204 [Arabidopsis thalian	0.266	0.320	0.438	8.4e-10
FB|FBgn0035483	338	Mul1 "Mitochondrial E3 ubiquit	0.929	0.588	0.231	1.6e-09
ZFIN|ZDB-GENE-050208-236	352	mul1b "mitochondrial E3 ubiqui	0.934	0.568	0.242	4.2e-09
UNIPROTKB|I3LH19	352	MUL1 "Uncharacterized protein"	0.911	0.553	0.255	9e-09
FB|FBgn0260635	438	th "thread" [Drosophila melano	0.252	0.123	0.457	1e-08

TAIR|locus:2014405 SPL2 "SP1-like 2" [Arabidopsis thaliana (taxid:3702)]

 Score = 653 (234.9 bits), Expect = 4.7e-64, P = 4.7e-64
 Identities = 123/214 (57%), Positives = 158/214 (73%)

Query:     1 MDGSRQPLPLTTAYQRLELANVSPFTFLQAMFGLKCPIGVLAEEKILPLGKDISAVGICS 60
             MDGSRQPLPLTT Y RL+  N S   FLQA      P+G+L  EKILP GKDI+AVGI S
Sbjct:   178 MDGSRQPLPLTTVYNRLQPINSS---FLQAFLYPDYPVGLLDIEKILPPGKDITAVGIYS 234

Query:    61 FKNGIPEIKSCKDLPYFLSEKTKDLMVVDLVNRSKILFWSGIVLGSLSIGILGYAIVRNW 120
             F NG+PEIKSC+DLPYFLSE TKD M+ DL+ ++  +F   ++LG +S+GIL YA VR W
Sbjct:   235 FNNGVPEIKSCQDLPYFLSEMTKDKMIEDLMEQTNFIFLGSVILGIVSVGILSYAAVRTW 294

Query:   121 NRWKDRQQRMSRQLTEAPSDDADSQIGSDEDVAGDIPDGQLCVVCLTRRRISAFNPCGHL 180
             N+WK  Q    R+L + P+D   S +  + + A +IPDG+LCV+C++RRR+ AF PCGH+
Sbjct:   295 NKWK--QWNHQRELPQRPND---SVVDDEPEDADEIPDGELCVICVSRRRVPAFIPCGHV 349

Query:   181 VCCRRCAISVEREASPKCPVCRMTVRSSMRIYFS 214
             VCCRRCA +VERE +PKCPVC  ++R SMR+Y+S
Sbjct:   350 VCCRRCASTVERELNPKCPVCLQSIRGSMRVYYS 383

GO:0005739 "mitochondrion" evidence=ISM

GO:0008270 "zinc ion binding" evidence=IEA

GO:0016881 "acid-amino acid ligase activity" evidence=IEA

GO:0009941 "chloroplast envelope" evidence=IDA

TAIR|locus:2202882 ZCF61 [Arabidopsis thaliana (taxid:3702)]

 Score = 184 (69.8 bits), Expect = 6.2e-14, P = 6.2e-14
 Identities = 59/216 (27%), Positives = 107/216 (49%)

Query:     8 LPLTTAYQRLELANVSPFTFLQAMFG-LKC--PIGVLAEEKILPLGKDISAVGICSFKNG 64
             L LT      E A   P + +Q   G LK    +GV   E+++P+G  ++ VG  + ++G
Sbjct:   131 LALTVGSDVFEKAE--PVSLVQGALGYLKGFKILGVRHVERVVPIGTPLTVVGE-AVRDG 187

Query:    65 IPEIKSCKDL--PYFLSEKTKDLMVV---DLVNRSKILFWSGIVLGSLSIG--ILGYAIV 117
             +  ++  K    P++++    D ++    DL  R K       VLG + I   ++ Y + 
Sbjct:   188 MGNVRIQKPEQGPFYVTYIPLDQLISKLGDLSRRFKYASMGLTVLGVILISKPVIEYILK 247

Query:   118 RNWNRWKDRQQRMS-RQLTEAPSDDADSQIGSDEDVAGDIPDGQLCVVCLTRRRISAFNP 176
             R  +  + R+++ + +++ +A +  A    G      GD PD  LCVVCL ++  +AF  
Sbjct:   248 RIEDTLERRRRQFALKRVVDAAARRAKPVTGGGTSRDGDTPD--LCVVCLDQKYNTAFVE 305

Query:   177 CGHLVCCRRCAISVEREASPKCPVCRMTVRSSMRIY 212
             CGH+ CC  C++ +       CP+CR  ++  ++IY
Sbjct:   306 CGHMCCCTPCSLQLRT-----CPLCRERIQQVLKIY 336

GO:0005739 "mitochondrion" evidence=ISM

GO:0008270 "zinc ion binding" evidence=IEA

GO:0016881 "acid-amino acid ligase activity" evidence=IEA

GO:0009941 "chloroplast envelope" evidence=IDA

UNIPROTKB|E1BGD5 MUL1 "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 169 (64.5 bits), Expect = 3.3e-12, P = 3.3e-12
 Identities = 57/213 (26%), Positives = 94/213 (44%)

Query:     8 LPLTTAYQRLELANVSPFTFLQAMF--GLKCPIGVLAEEKILPLGKDISAVGICSFKNGI 65
             L L T Y+R   +  S FT +   +  G + P GV   E++L +G  ++ VG     +  
Sbjct:   150 LGLETVYERFHPSTPS-FTDVVGHYLSGER-PKGVQETEEMLKVGAPLTGVGELVLDHSC 207

Query:    66 PEIKSCKD--LPYFLSEKTKDLMVVDLVNRSKILFWS--GIVLGSLSIGILGYAIVRNWN 121
               ++  K   + Y+LS +  D ++      S +  W    +V G  +   L + + + + 
Sbjct:   208 VRLQPPKGPGMQYYLSSQDFDSLLQR--QESSVRLWKVLALVFGFAACASLFFLLRKQYL 265

Query:   122 RWKDRQQRMSRQLTEAPSDDADSQIGSDEDVAGDIPDGQLCVVCLTRRRISAFNPCGHLV 181
             R +  +QR   +  E    + D     +ED  G  P G  CVVCL   R   F  CGHL 
Sbjct:   266 RRRRERQRPEEEFRERACPEEDRP---EEDREG--PKGA-CVVCLNNFRSCVFLECGHLC 319

Query:   182 CCRRCAISVEREASPKCPVCRMTVRSSMRIYFS 214
              C  C  ++      +CP+CR  +   +R+Y S
Sbjct:   320 ACTECYRALPEPR--RCPICRQEISRVVRLYNS 350

GO:0090141 "positive regulation of mitochondrial fission" evidence=IEA

GO:0051646 "mitochondrion localization" evidence=IEA

GO:0050821 "protein stabilization" evidence=IEA

GO:0043123 "positive regulation of I-kappaB kinase/NF-kappaB cascade" evidence=IEA

GO:0042802 "identical protein binding" evidence=IEA

GO:0033235 "positive regulation of protein sumoylation" evidence=IEA

GO:0031625 "ubiquitin protein ligase binding" evidence=IEA

GO:0031307 "integral to mitochondrial outer membrane" evidence=IEA

GO:0030308 "negative regulation of cell growth" evidence=IEA

GO:0019789 "SUMO ligase activity" evidence=IEA

GO:0010637 "negative regulation of mitochondrial fusion" evidence=IEA

GO:0007257 "activation of JUN kinase activity" evidence=IEA

GO:0006919 "activation of cysteine-type endopeptidase activity involved in apoptotic process" evidence=IEA

GO:0006917 "induction of apoptosis" evidence=IEA

GO:0005777 "peroxisome" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0004871 "signal transducer activity" evidence=IEA

GO:0004842 "ubiquitin-protein ligase activity" evidence=IEA

GO:0000266 "mitochondrial fission" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

MGI|MGI:1915600 Mul1 "mitochondrial ubiquitin ligase activator of NFKB 1" [Mus musculus (taxid:10090)]

 Score = 160 (61.4 bits), Expect = 3.3e-11, P = 3.3e-11
 Identities = 53/212 (25%), Positives = 98/212 (46%)

Query:     8 LPLTTAYQRLELANVSPFT-FLQAMFGLKCPIGVLAEEKILPLGKDISAVGICSFKNGIP 66
             L L T Y++    +V  FT  +      + P G+   E++L +G  ++ +G     N   
Sbjct:   150 LGLETVYEKFH-PSVQSFTDAIGHYISGERPKGIQETEEMLKVGATLTGIGELVLDNNAV 208

Query:    67 EIKSCKD-LPYFLSEKTKDLMVVDLVNRSKILFWSGIVL--GSLSIGILGYAIVRNWNRW 123
              ++  K  + Y+LS +  D ++      S +  W  +VL  G  +   L + I+R   ++
Sbjct:   209 RLQPPKQGMQYYLSSQDFDSLLHR--QESSVRLWKILVLVFGFATCATL-FFILRK--QY 263

Query:   124 KDRQQRMSRQLTEAPSDDADSQIGSDEDVAGDIPDGQLCVVCLTRRRISAFNPCGHLVCC 183
               RQ+R+ +Q  +    + ++Q+ S             CVVCL+  +   F  CGH+  C
Sbjct:   264 LHRQERLRQQQLQEEFLEHEAQLLSQASPEDRESLKSACVVCLSNFKSCVFLECGHVCSC 323

Query:   184 RRCAISVEREASPK-CPVCRMTVRSSMRIYFS 214
             R+C +++     PK CP+CR  +   + +Y S
Sbjct:   324 RQCYLALPE---PKRCPICRREITRVIPLYNS 352

GO:0000266 "mitochondrial fission" evidence=ISO

GO:0004842 "ubiquitin-protein ligase activity" evidence=ISO

GO:0004871 "signal transducer activity" evidence=ISO

GO:0005739 "mitochondrion" evidence=IDA

GO:0005741 "mitochondrial outer membrane" evidence=IEA

GO:0005777 "peroxisome" evidence=ISO

GO:0006915 "apoptotic process" evidence=IEA

GO:0006917 "induction of apoptosis" evidence=ISO

GO:0006919 "activation of cysteine-type endopeptidase activity involved in apoptotic process" evidence=ISO

GO:0007257 "activation of JUN kinase activity" evidence=ISO

GO:0008270 "zinc ion binding" evidence=IEA

GO:0010637 "negative regulation of mitochondrial fusion" evidence=ISO

GO:0016020 "membrane" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0016567 "protein ubiquitination" evidence=ISO

GO:0016874 "ligase activity" evidence=IEA

GO:0016881 "acid-amino acid ligase activity" evidence=IEA

GO:0019789 "SUMO ligase activity" evidence=ISO

GO:0030308 "negative regulation of cell growth" evidence=ISO

GO:0031307 "integral to mitochondrial outer membrane" evidence=ISO

GO:0031625 "ubiquitin protein ligase binding" evidence=ISO

GO:0033235 "positive regulation of protein sumoylation" evidence=ISO

GO:0042802 "identical protein binding" evidence=ISO

GO:0043123 "positive regulation of I-kappaB kinase/NF-kappaB cascade" evidence=ISO

GO:0046872 "metal ion binding" evidence=IEA

GO:0050821 "protein stabilization" evidence=ISO

GO:0051646 "mitochondrion localization" evidence=ISO

GO:0090141 "positive regulation of mitochondrial fission" evidence=ISO

RGD|1309944 Mul1 "mitochondrial E3 ubiquitin protein ligase 1" [Rattus norvegicus (taxid:10116)]

 Score = 155 (59.6 bits), Expect = 3.5e-10, P = 3.5e-10
 Identities = 53/212 (25%), Positives = 97/212 (45%)

Query:     8 LPLTTAYQRLELANVSPFT-FLQAMFGLKCPIGVLAEEKILPLGKDISAVGICSFKNGIP 66
             L L T Y++    +V  FT  +      + P GV   E++L +G  ++ +G     N   
Sbjct:   150 LGLETVYEKFH-PSVQSFTDAIGHYISGERPKGVQETEEMLKVGATLTGIGELVLDNNSV 208

Query:    67 EIKSCKD-LPYFLSEKTKDLMVVDLVNRSKILFWSGIVL--GSLSIGILGYAIVRNWNRW 123
              ++  K  + Y+LS +  D ++      S +  W  +VL  G  +   L + I+R   ++
Sbjct:   209 RLQPPKQGMQYYLSSQDFDSLLHR--QESSVRLWKVLVLVFGFATCATL-FFILRK--QY 263

Query:   124 KDRQQRMSRQLTEAPSDDADSQIGSDEDVAGDIPDGQLCVVCLTRRRISAFNPCGHLVCC 183
               RQ+R+ +Q  +    + ++ + S             CVVCL+  +   F  CGH+  C
Sbjct:   264 LQRQERLRQQQLQDEFLEHEAHLLSQASPEDRESLKSACVVCLSNFKSCVFLECGHVCSC 323

Query:   184 RRCAISVEREASPK-CPVCRMTVRSSMRIYFS 214
             R+C +++     PK CP+CR  +   + +Y S
Sbjct:   324 RQCYLALPE---PKRCPICRRGITRVIPLYNS 352

GO:0000266 "mitochondrial fission" evidence=IEA;ISO

GO:0004842 "ubiquitin-protein ligase activity" evidence=IEA;ISO

GO:0004871 "signal transducer activity" evidence=IEA;ISO

GO:0005634 "nucleus" evidence=IEA;ISO

GO:0005737 "cytoplasm" evidence=ISO

GO:0005739 "mitochondrion" evidence=ISO

GO:0005777 "peroxisome" evidence=IEA;ISO

GO:0006917 "induction of apoptosis" evidence=IEA;ISO

GO:0006919 "activation of cysteine-type endopeptidase activity involved in apoptotic process" evidence=IEA;ISO

GO:0007257 "activation of JUN kinase activity" evidence=IEA;ISO

GO:0008270 "zinc ion binding" evidence=IEA

GO:0010637 "negative regulation of mitochondrial fusion" evidence=IEA;ISO

GO:0016567 "protein ubiquitination" evidence=ISO

GO:0019789 "SUMO ligase activity" evidence=IEA;ISO

GO:0030308 "negative regulation of cell growth" evidence=IEA;ISO

GO:0031307 "integral to mitochondrial outer membrane" evidence=IEA;ISO

GO:0031625 "ubiquitin protein ligase binding" evidence=IEA;ISO

GO:0033235 "positive regulation of protein sumoylation" evidence=IEA;ISO

GO:0042802 "identical protein binding" evidence=IEA;ISO

GO:0043123 "positive regulation of I-kappaB kinase/NF-kappaB cascade" evidence=IEA;ISO

GO:0050821 "protein stabilization" evidence=IEA;ISO

GO:0051646 "mitochondrion localization" evidence=IEA;ISO

GO:0090141 "positive regulation of mitochondrial fission" evidence=IEA;ISO

GO:0005730 "nucleolus" evidence=ISO

TAIR|locus:4515103444 AT4G24204 [Arabidopsis thaliana (taxid:3702)]

 Score = 141 (54.7 bits), Expect = 8.4e-10, P = 8.4e-10
 Identities = 25/57 (43%), Positives = 31/57 (54%)

Query:   155 DIPDGQLCVVCLTRRRISAFNPCGHLVCCRRCAISVEREASPKCPVCRMTVRSSMRI 211
             D+    LCV+C   RR   F PCGH   CR CA  +  E S  CP+CR  +R S R+
Sbjct:   117 DVDYSTLCVICFEERRNCFFVPCGHSATCRGCAQRILSEESKVCPICRRVIRKSKRL 173

GO:0005576 "extracellular region" evidence=ISM

GO:0005634 "nucleus" evidence=ISM

GO:0005886 "plasma membrane" evidence=ISM

GO:0008270 "zinc ion binding" evidence=IEA

FB|FBgn0035483 Mul1 "Mitochondrial E3 ubiquitin protein ligase 1 homologue" [Drosophila melanogaster (taxid:7227)]

 Score = 152 (58.6 bits), Expect = 1.6e-09, P = 1.6e-09
 Identities = 48/207 (23%), Positives = 87/207 (42%)

Query:     8 LPLTTAYQRLELANVSPFTFLQAMFGLKCPIGVLAEEKILPLGKDISAVGICSFKNGIPE 67
             L +   Y   E +N+S F  +   F      G+   E++L  G  ++A+G          
Sbjct:   140 LDVDVVYDNYEPSNLSLFDHVFGFFSGVRQRGLQTTEEVLREGSFLTAIGELELDGDTLR 199

Query:    68 IKSCKDLPYFLSEKTKDLMVVDLVNRSKILFWSGIVLGSLSIGILGYAIVRNWNRWKDRQ 127
             ++   + P FL+  TK  ++    +         +V  ++S  ++ + I +   R K +Q
Sbjct:   200 MQPSNEGPLFLTTATKSTLIKRFEDAKTTTILKLVVCSTISAILVAF-IAKKLYR-KRKQ 257

Query:   128 QRMSRQLTEAPSDDADSQIGSDEDVAGDIPDGQLCVVCLTRRRISAFNPCGHLVCCRRCA 187
             +R   ++ E    D + +          +   QLCVVC T  +     PCGH+  C  CA
Sbjct:   258 EREEAKIRERL--DTERRERRARSRPHTLSQDQLCVVCSTNPKEIILLPCGHVCLCEDCA 315

Query:   188 ISVEREASPKCPVCRMTVRSSMRIYFS 214
                 ++ S  CPVCR ++ S    + +
Sbjct:   316 ----QKISVTCPVCRGSIVSKAAAFIA 338

GO:0008270 "zinc ion binding" evidence=IEA

GO:0016881 "acid-amino acid ligase activity" evidence=IEA

ZFIN|ZDB-GENE-050208-236 mul1b "mitochondrial E3 ubiquitin ligase 1b" [Danio rerio (taxid:7955)]

 Score = 150 (57.9 bits), Expect = 4.2e-09, P = 4.2e-09
 Identities = 51/210 (24%), Positives = 88/210 (41%)

Query:     8 LPLTTAYQRLELANVSPFTFLQAMFGLKCPIGVLAEEKILPLGKDISAVGICSFKNGIPE 67
             L L T Y+    +  S    +      + P G+   E++L LG  ++ VG     N +  
Sbjct:   150 LDLETTYENFHPSQQSLTNVIGHFISGERPQGIQETEEMLRLGASMTGVGELVLDNNLVR 209

Query:    68 IKSCKD-LPYFLSEKTKDLMVVDLVNRSKILFWSGIVLGSLSIGILGYAIVRNWNRWKDR 126
             ++  K  L YFLS    D ++       +I     ++ G  +     Y + R +   K+R
Sbjct:   210 LQPPKQGLRYFLSRLDYDTLLSKQEAHLRIWRVLTVLFGLTACATFFYLLWRQYVLRKER 269

Query:   127 QQRMS--RQLTEAPSDDADSQIGSDEDVAGDIPDGQLCVVCLTRRRISAFNPCGHLVCCR 184
             ++  S   +  +  S        ++EDV+   P    C +CL  +R   F  CGH+  C 
Sbjct:   270 RKEQSVLDEYRKWQSKRFQELHLAEEDVS---PTA--CTICLNHKRSCVFLECGHVCSCE 324

Query:   185 RCAISVEREASPKCPVCRMTVRSSMRIYFS 214
              C  ++      KCP+CR T+   + +Y S
Sbjct:   325 GCYRALPEPK--KCPICRATIDRIVSLYNS 352

GO:0016881 "acid-amino acid ligase activity" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

GO:0046872 "metal ion binding" evidence=IEA

UNIPROTKB|I3LH19 MUL1 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 148 (57.2 bits), Expect = 9.0e-09, P = 9.0e-09
 Identities = 55/215 (25%), Positives = 99/215 (46%)

Query:     8 LPLTTAYQRLELANVSPFTFLQAMF--GLKCPIGVLAEEKILPLGKDISAVGICSFKNGI 65
             L L T Y++    ++  FT +   +  G + P G+   E++L +G  ++ VG     N  
Sbjct:   150 LGLETVYEKFH-PSIQSFTDVIGHYISGER-PKGIQETEEMLKVGATLTGVGELVLDNNA 207

Query:    66 PEIKSCKD-LPYFLSEKTKDLMVVDLVNRSKILFWSGIVL--GSLSIGILGYAIVRNWNR 122
               ++  K  + Y+LS +  D ++      S +  W  ++L  G  +   L + I+R   +
Sbjct:   208 VRLQPPKQGMQYYLSSQDFDSLLQR--QESSVRLWKVLMLVFGFATCATL-FFILRK--Q 262

Query:   123 WKDRQQRMS-RQLTEAPSD-DADSQIGSDEDVAGDIPDGQLCVVCLTRRRISAFNPCGHL 180
             +  RQ+R+  +QL E   + +A    G+  +    +     CVVCL+  R   F  CGH+
Sbjct:   263 YLQRQERLRLKQLEEEFREHEARLLSGAQPEDRESLKSA--CVVCLSNFRSCVFLECGHV 320

Query:   181 VCCRRCAISVEREASPK-CPVCRMTVRSSMRIYFS 214
               C  C  ++     PK CP+CR  +   + +Y S
Sbjct:   321 CSCAECYRALPE---PKRCPICRQAITRVIPLYNS 352

GO:0090141 "positive regulation of mitochondrial fission" evidence=IEA

GO:0051646 "mitochondrion localization" evidence=IEA

GO:0050821 "protein stabilization" evidence=IEA

GO:0043123 "positive regulation of I-kappaB kinase/NF-kappaB cascade" evidence=IEA

GO:0042802 "identical protein binding" evidence=IEA

GO:0033235 "positive regulation of protein sumoylation" evidence=IEA

GO:0031625 "ubiquitin protein ligase binding" evidence=IEA

GO:0031307 "integral to mitochondrial outer membrane" evidence=IEA

GO:0030308 "negative regulation of cell growth" evidence=IEA

GO:0019789 "SUMO ligase activity" evidence=IEA

GO:0010637 "negative regulation of mitochondrial fusion" evidence=IEA

GO:0007257 "activation of JUN kinase activity" evidence=IEA

GO:0006919 "activation of cysteine-type endopeptidase activity involved in apoptotic process" evidence=IEA

GO:0006917 "induction of apoptosis" evidence=IEA

GO:0005777 "peroxisome" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0004871 "signal transducer activity" evidence=IEA

GO:0004842 "ubiquitin-protein ligase activity" evidence=IEA

GO:0000266 "mitochondrial fission" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

FB|FBgn0260635 th "thread" [Drosophila melanogaster (taxid:7227)]

 Score = 140 (54.3 bits), Expect = 1.0e-08, Sum P(2) = 1.0e-08
 Identities = 27/59 (45%), Positives = 35/59 (59%)

Query:   156 IPDGQLCVVCLTRRRISAFNPCGHLVCCRRCAISVEREASPKCPVCRMTVRSSMRIYFS 214
             IP+ +LC +C      +AF PCGH+V C +CA SV      KCP+CR      MR+YFS
Sbjct:   385 IPEEKLCKICYGAEYNTAFLPCGHVVACAKCASSVT-----KCPLCRKPFTDVMRVYFS 438

GO:0043066 "negative regulation of apoptotic process" evidence=IGI;ISS;NAS;IMP;IDA;TAS

GO:0006915 "apoptotic process" evidence=NAS;TAS;IPI

GO:0007275 "multicellular organismal development" evidence=TAS

GO:0043154 "negative regulation of cysteine-type endopeptidase activity involved in apoptotic process" evidence=IGI;TAS

GO:0004842 "ubiquitin-protein ligase activity" evidence=TAS

GO:0006513 "protein monoubiquitination" evidence=TAS

GO:0008354 "germ cell migration" evidence=TAS

GO:0042787 "protein ubiquitination involved in ubiquitin-dependent protein catabolic process" evidence=TAS

GO:0007289 "spermatid nucleus differentiation" evidence=IMP

GO:0008270 "zinc ion binding" evidence=IEA

GO:0009987 "cellular process" evidence=IMP

GO:0007298 "border follicle cell migration" evidence=IGI;IMP

GO:0048800 "antennal morphogenesis" evidence=IMP

GO:0007423 "sensory organ development" evidence=IMP

GO:0046673 "negative regulation of compound eye retinal cell programmed cell death" evidence=IMP

GO:0005515 "protein binding" evidence=IPI

GO:0005737 "cytoplasm" evidence=IDA

GO:0005634 "nucleus" evidence=IDA

GO:0031398 "positive regulation of protein ubiquitination" evidence=IDA

GO:0045035 "sensory organ precursor cell division" evidence=IGI

GO:0008407 "chaeta morphogenesis" evidence=IMP

GO:0019899 "enzyme binding" evidence=IPI

GO:0019788 "NEDD8 ligase activity" evidence=IDA

GO:0090263 "positive regulation of canonical Wnt receptor signaling pathway" evidence=IMP

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	214
pfam12483	154	pfam12483, GIDE, E3 Ubiquitin ligase	6e-27
pfam13920	49	pfam13920, zf-C3HC4_3, Zinc finger, C3HC4 type (RI	1e-11
cd00162	45	cd00162, RING, RING-finger (Really Interesting New	2e-05
pfam13923	45	pfam13923, zf-C3HC4_2, Zinc finger, C3HC4 type (RI	4e-05
COG5574	271	COG5574, PEX10, RING-finger-containing E3 ubiquiti	0.003

>gnl|CDD|221597 pfam12483, GIDE, E3 Ubiquitin ligase

 Score =  100 bits (250), Expect = 6e-27
 Identities = 32/112 (28%), Positives = 56/112 (50%), Gaps = 2/112 (1%)

Query: 1   MDGSRQPLPLTTAYQRLELANVSPFTFLQAMFGLKCPIGVLAEEKILPLGKDISAVG-IC 59
           MD S   + L T   R E +  S F+ L   F     +G    E++LP+G  ++ VG   
Sbjct: 43  MDPSGAEIELVTVLDRFEPSEGSLFSLLFGFFSGDVTLGYRYIERVLPVGTRLTVVGEAV 102

Query: 60  SFKNGIPEIKSCKDL-PYFLSEKTKDLMVVDLVNRSKILFWSGIVLGSLSIG 110
             ++G   I+      P+F+S K+++ ++  L + ++ LF+  I LG + IG
Sbjct: 103 RDEDGTLRIQKPSKGGPFFISTKSEEELIESLASSARTLFYGSIGLGVVGIG 154

This domain family is found in bacteria, archaea and eukaryotes, and is typically between 150 and 163 amino acids in length. There is a single completely conserved residue E that may be functionally important. GIDE is an E3 ubiquitin ligase which is involved in inducing apoptosis. Length = 154

>gnl|CDD|222454 pfam13920, zf-C3HC4_3, Zinc finger, C3HC4 type (RING finger)

 Score = 57.4 bits (139), Expect = 1e-11
 Identities = 22/51 (43%), Positives = 27/51 (52%), Gaps = 2/51 (3%)

Query: 158 DGQLCVVCLTRRRISAFNPCGHLVCCRRCAISVEREASPKCPVCRMTVRSS 208
           +  LCV+CL R R   F PCGHL  C  CA  +      KCP+CR  + S 
Sbjct: 1   EDDLCVICLERPRNVVFLPCGHLCLCEECAKRLRS--KKKCPICRQPIESV 49

Length = 49

>gnl|CDD|238093 cd00162, RING, RING-finger (Really Interesting New Gene) domain, a specialized type of Zn-finger of 40 to 60 residues that binds two atoms of zinc; defined by the 'cross-brace' motif C-X2-C-X(9-39)-C-X(1-3)- H-X(2-3)-(N/C/H)-X2-C-X(4-48)C-X2-C; probably involved in mediating protein-protein interactions; identified in a proteins with a wide range of functions such as viral replication, signal transduction, and development; has two variants, the C3HC4-type and a C3H2C3-type (RING-H2 finger), which have different cysteine/histidine pattern; a subset of RINGs are associated with B-Boxes (C-X2-H-X7-C-X7-C-X2-C-H-X2-H)

 Score = 40.1 bits (94), Expect = 2e-05
 Identities = 16/45 (35%), Positives = 20/45 (44%), Gaps = 2/45 (4%)

Query: 162 CVVCLTRRRISA-FNPCGHLVCCRRCAISVEREASPKCPVCRMTV 205
           C +CL   R      PCGH V CR C     +     CP+CR  +
Sbjct: 2   CPICLEEFREPVVLLPCGH-VFCRSCIDKWLKSGKNTCPLCRTPI 45

Length = 45

>gnl|CDD|206094 pfam13923, zf-C3HC4_2, Zinc finger, C3HC4 type (RING finger)

 Score = 39.4 bits (92), Expect = 4e-05
 Identities = 17/47 (36%), Positives = 22/47 (46%), Gaps = 3/47 (6%)

Query: 158 DGQLCVVCLTRRRISA-FNPCGHLVCCRRCAISVEREASPKCPVCRM 203
           +   C +CL   R      PCGH V CR C +    +   KCP+CR 
Sbjct: 1   EELECPICLDLLRDPVVLTPCGH-VFCRECILRY-LKKKSKCPICRT 45

Length = 45

>gnl|CDD|227861 COG5574, PEX10, RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

 Score = 37.2 bits (86), Expect = 0.003
 Identities = 18/60 (30%), Positives = 27/60 (45%), Gaps = 1/60 (1%)

Query: 144 SQIGSDEDVAGDIPDGQL-CVVCLTRRRISAFNPCGHLVCCRRCAISVEREASPKCPVCR 202
            +  S ++    IP     C +CL    + +  PCGHL C     IS  ++    CP+CR
Sbjct: 199 KENLSKKNGLPFIPLADYKCFLCLEEPEVPSCTPCGHLFCLSCLLISWTKKKYEFCPLCR 258

Length = 271

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	214
KOG1571	355	consensus Predicted E3 ubiquitin ligase [Posttrans	99.97
PF12483	160	GIDE: E3 Ubiquitin ligase; InterPro: IPR022170 Thi	99.85
KOG4172	62	consensus Predicted E3 ubiquitin ligase [Posttrans	99.5
PF13920	50	zf-C3HC4_3: Zinc finger, C3HC4 type (RING finger);	99.4
KOG4265	349	consensus Predicted E3 ubiquitin ligase [Posttrans	99.36
KOG4275	350	consensus Predicted E3 ubiquitin ligase [Posttrans	99.22
KOG0317	293	consensus Predicted E3 ubiquitin ligase, integral	99.21
PLN03208	193	E3 ubiquitin-protein ligase RMA2; Provisional	99.18
PF15227	42	zf-C3HC4_4: zinc finger of C3HC4-type, RING; PDB:	99.09
KOG0823	230	consensus Predicted E3 ubiquitin ligase [Posttrans	99.06
KOG4628	348	consensus Predicted E3 ubiquitin ligase [Posttrans	99.03
PF13923	39	zf-C3HC4_2: Zinc finger, C3HC4 type (RING finger);	98.99
PHA02929	238	N1R/p28-like protein; Provisional	98.91
PF13639	44	zf-RING_2: Ring finger domain; PDB: 2KIZ_A 4EPO_C	98.84
PF00097	41	zf-C3HC4: Zinc finger, C3HC4 type (RING finger); I	98.77
KOG0320	187	consensus Predicted E3 ubiquitin ligase [Posttrans	98.75
PHA02926	242	zinc finger-like protein; Provisional	98.7
cd00162	45	RING RING-finger (Really Interesting New Gene) dom	98.69
PF14634	44	zf-RING_5: zinc-RING finger domain	98.64
smart00504	63	Ubox Modified RING finger domain. Modified RING fi	98.62
KOG2164	513	consensus Predicted E3 ubiquitin ligase [Posttrans	98.61
smart00184	39	RING Ring finger. E3 ubiquitin-protein ligase acti	98.61
COG5243	491	HRD1 HRD ubiquitin ligase complex, ER membrane com	98.56
TIGR00599	397	rad18 DNA repair protein rad18. This family is bas	98.55
COG5574	271	PEX10 RING-finger-containing E3 ubiquitin ligase [	98.51
PF13445	43	zf-RING_UBOX: RING-type zinc-finger; PDB: 2CT2_A.	98.47
COG5540	374	RING-finger-containing ubiquitin ligase [Posttrans	98.36
PF12678	73	zf-rbx1: RING-H2 zinc finger; InterPro: IPR024766	98.33
KOG1785	563	consensus Tyrosine kinase negative regulator CBL [	98.33
PF04564	73	U-box: U-box domain; InterPro: IPR003613 Quality c	98.31
KOG1100	207	consensus Predicted E3 ubiquitin ligase [Posttrans	98.28
KOG0287	442	consensus Postreplication repair protein RAD18 [Re	98.27
KOG0978	698	consensus E3 ubiquitin ligase involved in syntaxin	98.26
KOG2177	386	consensus Predicted E3 ubiquitin ligase [Posttrans	98.22
COG5432	391	RAD18 RING-finger-containing E3 ubiquitin ligase [	98.2
KOG0824	324	consensus Predicted E3 ubiquitin ligase [Posttrans	98.15
PF12861	85	zf-Apc11: Anaphase-promoting complex subunit 11 RI	97.94
PF14835	65	zf-RING_6: zf-RING of BARD1-type protein; PDB: 1JM	97.92
KOG0802	543	consensus E3 ubiquitin ligase [Posttranslational m	97.88
KOG0804	493	consensus Cytoplasmic Zn-finger protein BRAP2 (BRC	97.82
KOG0311	381	consensus Predicted E3 ubiquitin ligase [Posttrans	97.7
KOG4692	489	consensus Predicted E3 ubiquitin ligase [Posttrans	97.65
PF14447	55	Prok-RING_4: Prokaryotic RING finger family 4	97.63
KOG0828	636	consensus Predicted E3 ubiquitin ligase [Posttrans	97.45
TIGR00570	309	cdk7 CDK-activating kinase assembly factor MAT1. A	97.44
KOG4159	398	consensus Predicted E3 ubiquitin ligase [Posttrans	97.34
KOG1039	344	consensus Predicted E3 ubiquitin ligase [Posttrans	97.32
COG5236	493	Uncharacterized conserved protein, contains RING Z	97.21
COG5152	259	Uncharacterized conserved protein, contains RING a	97.13
PF14570	48	zf-RING_4: RING/Ubox like zinc-binding domain; PDB	96.93
KOG0297	391	consensus TNF receptor-associated factor [Signal t	96.88
KOG2879	298	consensus Predicted E3 ubiquitin ligase [Posttrans	96.86
KOG1813	313	consensus Predicted E3 ubiquitin ligase [Posttrans	96.86
KOG1734	328	consensus Predicted RING-containing E3 ubiquitin l	96.82
smart00744	49	RINGv The RING-variant domain is a C4HC3 zinc-fing	96.67
COG5222	427	Uncharacterized conserved protein, contains RING Z	96.37
KOG2660	331	consensus Locus-specific chromosome binding protei	96.37
KOG3002	299	consensus Zn finger protein [General function pred	96.36
KOG0826	357	consensus Predicted E3 ubiquitin ligase involved i	96.28
KOG1002	791	consensus Nucleotide excision repair protein RAD16	95.79
KOG0825	1134	consensus PHD Zn-finger protein [General function	95.78
PF11789	57	zf-Nse: Zinc-finger of the MIZ type in Nse subunit	95.67
KOG1814	445	consensus Predicted E3 ubiquitin ligase [Posttrans	95.65
PF07800	162	DUF1644: Protein of unknown function (DUF1644); In	95.62
KOG1001	674	consensus Helicase-like transcription factor HLTF/	95.51
PF05290	140	Baculo_IE-1: Baculovirus immediate-early protein (	95.47
PF11793	70	FANCL_C: FANCL C-terminal domain; PDB: 3K1L_A.	95.41
COG5175	480	MOT2 Transcriptional repressor [Transcription]	95.14
PF04641	260	Rtf2: Rtf2 RING-finger	95.13
COG5219	1525	Uncharacterized conserved protein, contains RING Z	95.02
KOG1428	3738	consensus Inhibitor of type V adenylyl cyclases/Ne	94.53
KOG3039	303	consensus Uncharacterized conserved protein [Funct	94.47
KOG2932	389	consensus E3 ubiquitin ligase involved in ubiquiti	94.22
KOG1493	84	consensus Anaphase-promoting complex (APC), subuni	94.19
PF10272	358	Tmpp129: Putative transmembrane protein precursor;	93.93
PF10367	109	Vps39_2: Vacuolar sorting protein 39 domain 2; Int	93.74
KOG4445	368	consensus Uncharacterized conserved protein, conta	93.68
COG5194	88	APC11 Component of SCF ubiquitin ligase and anapha	93.04
PF03854	50	zf-P11: P-11 zinc finger; InterPro: IPR003224 Zinc	91.9
KOG2113	394	consensus Predicted RNA binding protein, contains	91.85
COG5220	314	TFB3 Cdk activating kinase (CAK)/RNA polymerase II	91.44
KOG1941	518	consensus Acetylcholine receptor-associated protei	91.4
KOG1571	355	consensus Predicted E3 ubiquitin ligase [Posttrans	90.9
KOG4185	296	consensus Predicted E3 ubiquitin ligase [Posttrans	90.51
PHA02862	156	5L protein; Provisional	89.95
KOG0827	465	consensus Predicted E3 ubiquitin ligase [Posttrans	89.4
PHA02825	162	LAP/PHD finger-like protein; Provisional	89.27
PF05883	134	Baculo_RING: Baculovirus U-box/Ring-like domain; I	89.24
KOG3161	861	consensus Predicted E3 ubiquitin ligase [Posttrans	88.64
KOG2114	933	consensus Vacuolar assembly/sorting protein PEP5/V	87.0
PF04710	416	Pellino: Pellino; InterPro: IPR006800 Pellino is i	86.83
PHA03096	284	p28-like protein; Provisional	86.37
KOG2817	394	consensus Predicted E3 ubiquitin ligase [Posttrans	86.17
KOG4362	684	consensus Transcriptional regulator BRCA1 [Replica	84.93
KOG3842	429	consensus Adaptor protein Pellino [Signal transduc	83.06
KOG2930	114	consensus SCF ubiquitin ligase, Rbx1 component [Po	82.42
KOG3579	352	consensus Predicted E3 ubiquitin ligase [Posttrans	82.23
PF12906	47	RINGv: RING-variant domain; PDB: 2D8S_A 1VYX_A.	82.22
PF08114	43	PMP1_2: ATPase proteolipid family; InterPro: IPR01	81.68
KOG1940	276	consensus Zn-finger protein [General function pred	81.46
KOG3970	299	consensus Predicted E3 ubiquitin ligase [Posttrans	81.32

>KOG1571 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=99.97  E-value=1.9e-31  Score=224.48  Aligned_cols=202  Identities=24%  Similarity=0.444  Sum_probs=163.1

Q ss_pred             CCCCCCceeeeeceeeCC-CchhhhhhhhhcCceeceeeeeeeeecCCCeeeeEe-eeeecCCceeecCC-CCCCeeeec
Q 028047            4 SRQPLPLTTAYQRLELAN-VSPFTFLQAMFGLKCPIGVLAEEKILPLGKDISAVG-ICSFKNGIPEIKSC-KDLPYFLSE   80 (214)
Q Consensus         4 ~~~~l~~~~v~~~f~p~~-~~~~~~~~~~~sg~~~~G~~~~E~~L~~g~~it~vG-l~~~~~g~~~l~~~-~~~p~~ls~   80 (214)
                      ++..++++++|+.|+|+. -++.++.+++++|.++.|++++|++||+|+.+|++| ++.++.+..++++| +|.+|+.+.
T Consensus       139 ~~~~l~l~~~~d~f~~s~p~s~~~~~~~~~sg~~~~~~~~~~~~l~~~~~~t~l~e~v~d~~~~~r~~~~~~g~~~v~~s  218 (355)
T KOG1571|consen  139 GRLFLPLNVVYDLFEPSDPCSLVDVGGGYHSGVRRGGFRETERVLPLGTRLTALGELVRDGYCGVRVQPPMQGPLYVTKS  218 (355)
T ss_pred             eeeeecceeeeccccccCcceeeecccccccceeeecccceEEeeccccceeeeehheecCCCceEecCCccCcceeecc
Confidence            345789999999999999 599999999999999999999999999999999999 87888778899987 455555555


Q ss_pred             cCHHHHHHHhhhhhhhhhhhhhhhchhHHHHHHHHHHHHHHH--HHHHHHHHHHHhhhCCCc-----ccc-----ccCCC
Q 028047           81 KTKDLMVVDLVNRSKILFWSGIVLGSLSIGILGYAIVRNWNR--WKDRQQRMSRQLTEAPSD-----DAD-----SQIGS  148 (214)
Q Consensus        81 ~~~d~Li~~l~~~~~~~~~~~i~~~~~~~~~~~~~~~r~~~~--~~~~~~~~~~~~~~~~~~-----~~~-----~~~~~  148 (214)
                      . .++||.++....+..+|.+++++..++.++.+....++..  ++++++.  .+.++.+..     ..+     ..+. 
T Consensus       219 ~-~d~LIsr~g~~s~~~kv~~~~~~~~~~ills~~~~d~~led~r~~r~~l--~k~~~~~~~~rae~~s~g~~gtr~~~-  294 (355)
T KOG1571|consen  219 A-ADRLISREGDLSFFVKVNGMVFGTLGVILLSFIVKDNYLEDDRRQRREL--VKRVEDLATVRAELLSRGVRGTRIQN-  294 (355)
T ss_pred             c-hhhHHHhhccceeeeeecceeeeeeeEEeehHHHHHHHHHHHHHHHHHH--HHhhhhhhhheeeeeccccccccccc-
Confidence            5 9999999999999999999999999999999999988876  5554444  222222211     000     0111 


Q ss_pred             CccccCCCccccccccccccccceEEccCCCccccHhhHHHhhcCCCcccccccccccceEEeeeC
Q 028047          149 DEDVAGDIPDGQLCVVCLTRRRISAFNPCGHLVCCRRCAISVEREASPKCPVCRMTVRSSMRIYFS  214 (214)
Q Consensus       149 ~~~~~~~~~~~~~C~IC~~~~~~~~~lpCgH~~~C~~C~~~~~~~~~~~CP~CR~~i~~~~~i~~s  214 (214)
                      +.....+.+....|+||.+++.+++++||||+|||..|+..+.     .||+||+.|...+++|.+
T Consensus       295 ~~~~~~~~~~p~lcVVcl~e~~~~~fvpcGh~ccct~cs~~l~-----~CPvCR~rI~~~~k~y~~  355 (355)
T KOG1571|consen  295 ENGTFRELPQPDLCVVCLDEPKSAVFVPCGHVCCCTLCSKHLP-----QCPVCRQRIRLVRKRYRS  355 (355)
T ss_pred             ccCcccccCCCCceEEecCCccceeeecCCcEEEchHHHhhCC-----CCchhHHHHHHHHHHhcC
Confidence            1112233445669999999999999999999999999999886     699999999999999975

>PF12483 GIDE: E3 Ubiquitin ligase; InterPro: IPR022170 This domain family is found in bacteria, archaea and eukaryotes, and is typically between 150 and 163 amino acids in length

Probab=99.85  E-value=9.3e-22  Score=153.27  Aligned_cols=107  Identities=31%  Similarity=0.472  Sum_probs=100.8

Q ss_pred             CCCCCCCCCceeeeeceeeCCCchhhhhhhhhcCce---eceeeeeeeeecCCCeeeeEe-eeeecCCceeecCCCC--C
Q 028047            1 MDGSRQPLPLTTAYQRLELANVSPFTFLQAMFGLKC---PIGVLAEEKILPLGKDISAVG-ICSFKNGIPEIKSCKD--L   74 (214)
Q Consensus         1 ~~~~~~~l~~~~v~~~f~p~~~~~~~~~~~~~sg~~---~~G~~~~E~~L~~g~~it~vG-l~~~~~g~~~l~~~~~--~   74 (214)
                      +|.++++|++++||++|+|...+..+.++++++|++   ++|++++|+|||+|+.||++| +..+.+|.++|++|..  .
T Consensus        44 ~~p~~a~l~l~~v~~~f~p~~~~~~~~~~~~~~~~~~~~~~G~r~~E~~L~~G~~ltvvGe~~~~~~g~~~i~~p~~g~~  123 (160)
T PF12483_consen   44 DDPEGAELDLETVYDRFEPSPSSPPDGLFGFFSGERELEPKGYRYTEEILPVGTPLTVVGELVRDGDGNLVIQPPKDGGQ  123 (160)
T ss_pred             cCcccCccceeeEEEEeEECCCCccceeeeeeccceeccccccEEEEEEcCCCCEEEEEEEEEEcCCCcEEEeCCCCCCc
Confidence            377899999999999999999999999999999999   999999999999999999999 7788899999999943  5


Q ss_pred             CeeeeccCHHHHHHHhhhhhhhhhhhhhhhchh
Q 028047           75 PYFLSEKTKDLMVVDLVNRSKILFWSGIVLGSL  107 (214)
Q Consensus        75 p~~ls~~~~d~Li~~l~~~~~~~~~~~i~~~~~  107 (214)
                      |||++..+.++|+.++++++++|+|++++++.+
T Consensus       124 ~f~iS~~s~~~l~~~~~~~~~~~~~~~i~~~~~  156 (160)
T PF12483_consen  124 PFFISTKSEEELIRSLRSSARWWKWLAIALGVV  156 (160)
T ss_pred             cEEEeCCCHHHHHHHHHHHHHHHHHHHhheeEE
Confidence            999999999999999999999999999988876

There is a single completely conserved residue E that may be functionally important. GIDE is an E3 ubiquitin ligase which is involved in inducing apoptosis. ; GO: 0016881 acid-amino acid ligase activity

>KOG4172 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=99.50  E-value=8.2e-16  Score=95.23  Aligned_cols=55  Identities=25%  Similarity=0.758  Sum_probs=51.5

Q ss_pred             cccccccccccceEEccCCCccccHhhHHHhhcCCCcccccccccccceEEeeeC
Q 028047          160 QLCVVCLTRRRISAFNPCGHLVCCRRCAISVEREASPKCPVCRMTVRSSMRIYFS  214 (214)
Q Consensus       160 ~~C~IC~~~~~~~~~lpCgH~~~C~~C~~~~~~~~~~~CP~CR~~i~~~~~i~~s  214 (214)
                      .+|.||++.+.+.++.-|||.+.|..|..++++.....||+||++|..+++.|.|
T Consensus         8 dECTICye~pvdsVlYtCGHMCmCy~Cg~rl~~~~~g~CPiCRapi~dvIkTY~s   62 (62)
T KOG4172|consen    8 DECTICYEHPVDSVLYTCGHMCMCYACGLRLKKALHGCCPICRAPIKDVIKTYRS   62 (62)
T ss_pred             cceeeeccCcchHHHHHcchHHhHHHHHHHHHHccCCcCcchhhHHHHHHHhhcC
Confidence            5799999999999999999999999999999987777899999999999999976

>PF13920 zf-C3HC4_3: Zinc finger, C3HC4 type (RING finger); PDB: 2YHN_B 2YHO_G 3T6P_A 2CSY_A 2VJE_B 2VJF_B 2HDP_B 2EA5_A 2ECG_A 3EB5_A

Probab=99.40  E-value=1.5e-13  Score=86.37  Aligned_cols=49  Identities=35%  Similarity=0.869  Sum_probs=41.4

Q ss_pred             ccccccccccccceEEccCCCccccHhhHHHhhcCCCcccccccccccce
Q 028047          159 GQLCVVCLTRRRISAFNPCGHLVCCRRCAISVEREASPKCPVCRMTVRSS  208 (214)
Q Consensus       159 ~~~C~IC~~~~~~~~~lpCgH~~~C~~C~~~~~~~~~~~CP~CR~~i~~~  208 (214)
                      +..|.||+++..+++++||||.+.|..|+.++.. ....||+||++|+++
T Consensus         2 ~~~C~iC~~~~~~~~~~pCgH~~~C~~C~~~~~~-~~~~CP~Cr~~i~~V   50 (50)
T PF13920_consen    2 DEECPICFENPRDVVLLPCGHLCFCEECAERLLK-RKKKCPICRQPIESV   50 (50)
T ss_dssp             HSB-TTTSSSBSSEEEETTCEEEEEHHHHHHHHH-TTSBBTTTTBB-SEE
T ss_pred             cCCCccCCccCCceEEeCCCChHHHHHHhHHhcc-cCCCCCcCChhhcCC
Confidence            4689999999999999999999559999999975 456899999999864

...

>KOG4265 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=99.36  E-value=3e-13  Score=114.60  Aligned_cols=56  Identities=36%  Similarity=0.885  Sum_probs=49.4

Q ss_pred             ccccccccccccccceEEccCCCccccHhhHHHhhcCCCcccccccccccceEEeee
Q 028047          157 PDGQLCVVCLTRRRISAFNPCGHLVCCRRCAISVEREASPKCPVCRMTVRSSMRIYF  213 (214)
Q Consensus       157 ~~~~~C~IC~~~~~~~~~lpCgH~~~C~~C~~~~~~~~~~~CP~CR~~i~~~~~i~~  213 (214)
                      ++...|+||++..++.++|||.|.|.|..|++.+.-+ ..+||+||++|...+.|+.
T Consensus       288 ~~gkeCVIClse~rdt~vLPCRHLCLCs~Ca~~Lr~q-~n~CPICRqpi~~ll~i~~  343 (349)
T KOG4265|consen  288 ESGKECVICLSESRDTVVLPCRHLCLCSGCAKSLRYQ-TNNCPICRQPIEELLEIYV  343 (349)
T ss_pred             cCCCeeEEEecCCcceEEecchhhehhHhHHHHHHHh-hcCCCccccchHhhheecc
Confidence            4567999999999999999999999999999988733 3479999999999988874

>KOG4275 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=99.22  E-value=8.5e-13  Score=108.72  Aligned_cols=52  Identities=33%  Similarity=0.899  Sum_probs=48.8

Q ss_pred             cccccccccccccceEEccCCCccccHhhHHHhhcCCCcccccccccccceEEeeeC
Q 028047          158 DGQLCVVCLTRRRISAFNPCGHLVCCRRCAISVEREASPKCPVCRMTVRSSMRIYFS  214 (214)
Q Consensus       158 ~~~~C~IC~~~~~~~~~lpCgH~~~C~~C~~~~~~~~~~~CP~CR~~i~~~~~i~~s  214 (214)
                      ...+|.||+|.+++++||+|||.+.|..|-.++.     .||+||+.|.++++||.+
T Consensus       299 ~~~LC~ICmDaP~DCvfLeCGHmVtCt~CGkrm~-----eCPICRqyi~rvvrif~~  350 (350)
T KOG4275|consen  299 TRRLCAICMDAPRDCVFLECGHMVTCTKCGKRMN-----ECPICRQYIVRVVRIFRV  350 (350)
T ss_pred             HHHHHHHHhcCCcceEEeecCcEEeehhhccccc-----cCchHHHHHHHHHhhhcC
Confidence            3679999999999999999999999999999987     799999999999999974

>KOG0317 consensus Predicted E3 ubiquitin ligase, integral peroxisomal membrane protein [Posttranslational modification, protein turnover, chaperones]

Probab=99.21  E-value=2e-11  Score=100.84  Aligned_cols=52  Identities=33%  Similarity=0.800  Sum_probs=44.5

Q ss_pred             cccccccccccccceEEccCCCccccHhhHHHhhcCCCcccccccccccceEEe
Q 028047          158 DGQLCVVCLTRRRISAFNPCGHLVCCRRCAISVEREASPKCPVCRMTVRSSMRI  211 (214)
Q Consensus       158 ~~~~C~IC~~~~~~~~~lpCgH~~~C~~C~~~~~~~~~~~CP~CR~~i~~~~~i  211 (214)
                      ....|.+|+++..++..+||||.| |..|+..|... +..||.||.++....-|
T Consensus       238 a~~kC~LCLe~~~~pSaTpCGHiF-CWsCI~~w~~e-k~eCPlCR~~~~pskvi  289 (293)
T KOG0317|consen  238 ATRKCSLCLENRSNPSATPCGHIF-CWSCILEWCSE-KAECPLCREKFQPSKVI  289 (293)
T ss_pred             CCCceEEEecCCCCCCcCcCcchH-HHHHHHHHHcc-ccCCCcccccCCCccee
Confidence            357999999999999999999999 99999999854 44699999998765444

>PLN03208 E3 ubiquitin-protein ligase RMA2; Provisional

Probab=99.18  E-value=2.1e-11  Score=96.22  Aligned_cols=58  Identities=34%  Similarity=0.681  Sum_probs=47.2

Q ss_pred             CCccccccccccccccceEEccCCCccccHhhHHHhhcC---------------CCcccccccccccc--eEEeee
Q 028047          155 DIPDGQLCVVCLTRRRISAFNPCGHLVCCRRCAISVERE---------------ASPKCPVCRMTVRS--SMRIYF  213 (214)
Q Consensus       155 ~~~~~~~C~IC~~~~~~~~~lpCgH~~~C~~C~~~~~~~---------------~~~~CP~CR~~i~~--~~~i~~  213 (214)
                      +..+...|+||++...+++.++|||.| |..|+..|...               ....||+||.+|+.  ++++|.
T Consensus        14 ~~~~~~~CpICld~~~dPVvT~CGH~F-C~~CI~~wl~~s~~s~~~~~~~~~~k~~~~CPvCR~~Is~~~LvPiyg   88 (193)
T PLN03208         14 DSGGDFDCNICLDQVRDPVVTLCGHLF-CWPCIHKWTYASNNSRQRVDQYDHKREPPKCPVCKSDVSEATLVPIYG   88 (193)
T ss_pred             cCCCccCCccCCCcCCCcEEcCCCchh-HHHHHHHHHHhccccccccccccccCCCCcCCCCCCcCChhcEEEeec
Confidence            344567899999999999999999999 99999988531               23479999999965  677763

>PF15227 zf-C3HC4_4: zinc finger of C3HC4-type, RING; PDB: 2EGP_A 2ECV_A 2ECJ_A 2YSL_A 2YSJ_A

Probab=99.09  E-value=8e-11  Score=71.04  Aligned_cols=39  Identities=38%  Similarity=0.881  Sum_probs=31.4

Q ss_pred             cccccccccceEEccCCCccccHhhHHHhhcCCCc---ccccc
Q 028047          162 CVVCLTRRRISAFNPCGHLVCCRRCAISVEREASP---KCPVC  201 (214)
Q Consensus       162 C~IC~~~~~~~~~lpCgH~~~C~~C~~~~~~~~~~---~CP~C  201 (214)
                      |+||++.+.+++.++|||.| |..|+.++++....   .||.|
T Consensus         1 CpiC~~~~~~Pv~l~CGH~F-C~~Cl~~~~~~~~~~~~~CP~C   42 (42)
T PF15227_consen    1 CPICLDLFKDPVSLPCGHSF-CRSCLERLWKEPSGSGFSCPEC   42 (42)
T ss_dssp             ETTTTSB-SSEEE-SSSSEE-EHHHHHHHHCCSSSST---SSS
T ss_pred             CCccchhhCCccccCCcCHH-HHHHHHHHHHccCCcCCCCcCC
Confidence            89999999999999999999 99999999975433   59987

>KOG0823 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=99.06  E-value=8.8e-11  Score=94.36  Aligned_cols=53  Identities=30%  Similarity=0.673  Sum_probs=45.7

Q ss_pred             ccccccccccccceEEccCCCccccHhhHHHhhc--CCCccccccccccc--ceEEee
Q 028047          159 GQLCVVCLTRRRISAFNPCGHLVCCRRCAISVER--EASPKCPVCRMTVR--SSMRIY  212 (214)
Q Consensus       159 ~~~C~IC~~~~~~~~~lpCgH~~~C~~C~~~~~~--~~~~~CP~CR~~i~--~~~~i~  212 (214)
                      .-.|.||+|..+++|+..|||.| |..|+-+|..  ...+.||+|+..|+  .+++||
T Consensus        47 ~FdCNICLd~akdPVvTlCGHLF-CWpClyqWl~~~~~~~~cPVCK~~Vs~~~vvPlY  103 (230)
T KOG0823|consen   47 FFDCNICLDLAKDPVVTLCGHLF-CWPCLYQWLQTRPNSKECPVCKAEVSIDTVVPLY  103 (230)
T ss_pred             ceeeeeeccccCCCEEeecccce-ehHHHHHHHhhcCCCeeCCccccccccceEEeee
Confidence            45899999999999999999999 9999999985  33456999998875  578887

>KOG4628 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=99.03  E-value=2.8e-10  Score=97.43  Aligned_cols=48  Identities=25%  Similarity=0.619  Sum_probs=40.0

Q ss_pred             cccccccccccc---eEEccCCCccccHhhHHHhhcCCCcccccccccccce
Q 028047          160 QLCVVCLTRRRI---SAFNPCGHLVCCRRCAISVEREASPKCPVCRMTVRSS  208 (214)
Q Consensus       160 ~~C~IC~~~~~~---~~~lpCgH~~~C~~C~~~~~~~~~~~CP~CR~~i~~~  208 (214)
                      ..|+||+|.+..   ...|||+|.||| .|++.|..+....||+|++.|..-
T Consensus       230 ~~CaIClEdY~~GdklRiLPC~H~FH~-~CIDpWL~~~r~~CPvCK~di~~~  280 (348)
T KOG4628|consen  230 DTCAICLEDYEKGDKLRILPCSHKFHV-NCIDPWLTQTRTFCPVCKRDIRTD  280 (348)
T ss_pred             ceEEEeecccccCCeeeEecCCCchhh-ccchhhHhhcCccCCCCCCcCCCC
Confidence            589999998765   567999999985 999999876555699999987653

>PF13923 zf-C3HC4_2: Zinc finger, C3HC4 type (RING finger); PDB: 3HCU_A 2ECI_A 2JMD_A 3HCS_B 3HCT_A 3ZTG_A 2YUR_A 3L11_A

Probab=98.99  E-value=2.7e-10  Score=67.68  Aligned_cols=38  Identities=42%  Similarity=1.089  Sum_probs=32.8

Q ss_pred             cccccccccce-EEccCCCccccHhhHHHhhcCCCcccccc
Q 028047          162 CVVCLTRRRIS-AFNPCGHLVCCRRCAISVEREASPKCPVC  201 (214)
Q Consensus       162 C~IC~~~~~~~-~~lpCgH~~~C~~C~~~~~~~~~~~CP~C  201 (214)
                      |+||++...++ ++++|||.| |.+|+.++.+. ...||+|
T Consensus         1 C~iC~~~~~~~~~~~~CGH~f-C~~C~~~~~~~-~~~CP~C   39 (39)
T PF13923_consen    1 CPICLDELRDPVVVTPCGHSF-CKECIEKYLEK-NPKCPVC   39 (39)
T ss_dssp             ETTTTSB-SSEEEECTTSEEE-EHHHHHHHHHC-TSB-TTT
T ss_pred             CCCCCCcccCcCEECCCCCch-hHHHHHHHHHC-cCCCcCC
Confidence            89999999999 689999999 99999999876 6789998

>PHA02929 N1R/p28-like protein; Provisional

Probab=98.91  E-value=7.3e-10  Score=90.88  Aligned_cols=52  Identities=25%  Similarity=0.667  Sum_probs=42.4

Q ss_pred             cccccccccccccc--------eEEccCCCccccHhhHHHhhcCCCcccccccccccceEEe
Q 028047          158 DGQLCVVCLTRRRI--------SAFNPCGHLVCCRRCAISVEREASPKCPVCRMTVRSSMRI  211 (214)
Q Consensus       158 ~~~~C~IC~~~~~~--------~~~lpCgH~~~C~~C~~~~~~~~~~~CP~CR~~i~~~~~i  211 (214)
                      .+..|+||++...+        ++..+|||.| |..|+..|... ...||+||.++..+++.
T Consensus       173 ~~~eC~ICle~~~~~~~~~~~~~vl~~C~H~F-C~~CI~~Wl~~-~~tCPlCR~~~~~v~~~  232 (238)
T PHA02929        173 KDKECAICMEKVYDKEIKNMYFGILSNCNHVF-CIECIDIWKKE-KNTCPVCRTPFISVIKS  232 (238)
T ss_pred             CCCCCccCCcccccCccccccceecCCCCCcc-cHHHHHHHHhc-CCCCCCCCCEeeEEeee
Confidence            45689999997554        3567899999 89999999753 56899999999987664

>PF13639 zf-RING_2: Ring finger domain; PDB: 2KIZ_A 4EPO_C 1IYM_A 2EP4_A 2ECT_A 2JRJ_A 2ECN_A 2ECM_A 3NG2_A 2EA6_A

Probab=98.84  E-value=1.2e-09  Score=66.57  Aligned_cols=40  Identities=35%  Similarity=0.798  Sum_probs=33.6

Q ss_pred             ccccccccc---cceEEccCCCccccHhhHHHhhcCCCccccccc
Q 028047          161 LCVVCLTRR---RISAFNPCGHLVCCRRCAISVEREASPKCPVCR  202 (214)
Q Consensus       161 ~C~IC~~~~---~~~~~lpCgH~~~C~~C~~~~~~~~~~~CP~CR  202 (214)
                      .|+||++..   ..++.++|||.| |.+|+..|.+. +..||+||
T Consensus         2 ~C~IC~~~~~~~~~~~~l~C~H~f-h~~Ci~~~~~~-~~~CP~CR   44 (44)
T PF13639_consen    2 ECPICLEEFEDGEKVVKLPCGHVF-HRSCIKEWLKR-NNSCPVCR   44 (44)
T ss_dssp             CETTTTCBHHTTSCEEEETTSEEE-EHHHHHHHHHH-SSB-TTTH
T ss_pred             CCcCCChhhcCCCeEEEccCCCee-CHHHHHHHHHh-CCcCCccC
Confidence            699999987   467889999999 79999999865 45899998

...

>PF00097 zf-C3HC4: Zinc finger, C3HC4 type (RING finger); InterPro: IPR018957 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=98.77  E-value=4.8e-09  Score=62.79  Aligned_cols=39  Identities=38%  Similarity=0.901  Sum_probs=35.2

Q ss_pred             cccccccccceE-EccCCCccccHhhHHHhhc-CCCcccccc
Q 028047          162 CVVCLTRRRISA-FNPCGHLVCCRRCAISVER-EASPKCPVC  201 (214)
Q Consensus       162 C~IC~~~~~~~~-~lpCgH~~~C~~C~~~~~~-~~~~~CP~C  201 (214)
                      |.||++...++. +++|||.| |..|+.++++ .....||.|
T Consensus         1 C~iC~~~~~~~~~~~~C~H~f-C~~C~~~~~~~~~~~~CP~C   41 (41)
T PF00097_consen    1 CPICLEPFEDPVILLPCGHSF-CRDCLRKWLENSGSVKCPLC   41 (41)
T ss_dssp             ETTTSSBCSSEEEETTTSEEE-EHHHHHHHHHHTSSSBTTTT
T ss_pred             CCcCCccccCCCEEecCCCcc-hHHHHHHHHHhcCCccCCcC
Confidence            899999999998 99999999 9999999987 556679988

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The C3HC4 type zinc-finger (RING finger) is a cysteine-rich domain of 40 to 60 residues that coordinates two zinc ions, and has the consensus sequence: C-X2-C-X(9-39)-C-X(1-3)-H-X(2-3)-C-X2-C-X(4-48)-C-X2-C where X is any amino acid []. Many proteins containing a RING finger play a key role in the ubiquitination pathway []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; PDB: 1CHC_A 2ECW_A 2Y43_B 1V87_A 2DJB_A 2H0D_B 3RPG_C 3KNV_A 2CKL_B 1JM7_A ....

>KOG0320 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=98.75  E-value=4.4e-09  Score=81.34  Aligned_cols=52  Identities=31%  Similarity=0.752  Sum_probs=41.6

Q ss_pred             ccccccccccccce--EEccCCCccccHhhHHHhhcCCCcccccccccccc--eEEee
Q 028047          159 GQLCVVCLTRRRIS--AFNPCGHLVCCRRCAISVEREASPKCPVCRMTVRS--SMRIY  212 (214)
Q Consensus       159 ~~~C~IC~~~~~~~--~~lpCgH~~~C~~C~~~~~~~~~~~CP~CR~~i~~--~~~i~  212 (214)
                      ...|+|||+....-  +-..|||+| |..|+....+. ...||+||..|+.  +.+||
T Consensus       131 ~~~CPiCl~~~sek~~vsTkCGHvF-C~~Cik~alk~-~~~CP~C~kkIt~k~~~rI~  186 (187)
T KOG0320|consen  131 TYKCPICLDSVSEKVPVSTKCGHVF-CSQCIKDALKN-TNKCPTCRKKITHKQFHRIY  186 (187)
T ss_pred             ccCCCceecchhhccccccccchhH-HHHHHHHHHHh-CCCCCCcccccchhhheecc
Confidence            35899999987654  458999999 99999988753 4579999988875  56666

>PHA02926 zinc finger-like protein; Provisional

Probab=98.70  E-value=5.1e-09  Score=83.85  Aligned_cols=53  Identities=25%  Similarity=0.627  Sum_probs=40.8

Q ss_pred             ccccccccccccc---------cceEEccCCCccccHhhHHHhhcCC-----CcccccccccccceEE
Q 028047          157 PDGQLCVVCLTRR---------RISAFNPCGHLVCCRRCAISVEREA-----SPKCPVCRMTVRSSMR  210 (214)
Q Consensus       157 ~~~~~C~IC~~~~---------~~~~~lpCgH~~~C~~C~~~~~~~~-----~~~CP~CR~~i~~~~~  210 (214)
                      ..+..|.||++..         +..++.+|+|.| |..|+..|....     ...||+||..+..+.+
T Consensus       168 SkE~eCgICmE~I~eK~~~~eRrFGIL~~CnHsF-Cl~CIr~Wr~~r~~~~~~rsCPiCR~~f~~I~p  234 (242)
T PHA02926        168 SKEKECGICYEVVYSKRLENDRYFGLLDSCNHIF-CITCINIWHRTRRETGASDNCPICRTRFRNITM  234 (242)
T ss_pred             cCCCCCccCccccccccccccccccccCCCCchH-HHHHHHHHHHhccccCcCCcCCCCcceeeeecc
Confidence            3467899999863         235778999999 999999998532     2349999999886643

>cd00162 RING RING-finger (Really Interesting New Gene) domain, a specialized type of Zn-finger of 40 to 60 residues that binds two atoms of zinc; defined by the 'cross-brace' motif C-X2-C-X(9-39)-C-X(1-3)- H-X(2-3)-(N/C/H)-X2-C-X(4-48)C-X2-C; probably involved in mediating protein-protein interactions; identified in a proteins with a wide range of functions such as viral replication, signal transduction, and development; has two variants, the C3HC4-type and a C3H2C3-type (RING-H2 finger), which have different cysteine/histidine pattern; a subset of RINGs are associated with B-Boxes (C-X2-H-X7-C-X7-C-X2-C-H-X2-H)

Probab=98.69  E-value=1.1e-08  Score=61.64  Aligned_cols=44  Identities=34%  Similarity=0.877  Sum_probs=35.5

Q ss_pred             ccccccccccceEEc-cCCCccccHhhHHHhhcCCCcccccccccc
Q 028047          161 LCVVCLTRRRISAFN-PCGHLVCCRRCAISVEREASPKCPVCRMTV  205 (214)
Q Consensus       161 ~C~IC~~~~~~~~~l-pCgH~~~C~~C~~~~~~~~~~~CP~CR~~i  205 (214)
                      .|+||++...+.+.+ +|||.| |..|+..+.......||+||..+
T Consensus         1 ~C~iC~~~~~~~~~~~~C~H~~-c~~C~~~~~~~~~~~Cp~C~~~~   45 (45)
T cd00162           1 ECPICLEEFREPVVLLPCGHVF-CRSCIDKWLKSGKNTCPLCRTPI   45 (45)
T ss_pred             CCCcCchhhhCceEecCCCChh-cHHHHHHHHHhCcCCCCCCCCcC
Confidence            499999998665554 499999 89999998865456799999764

>PF14634 zf-RING_5: zinc-RING finger domain

Probab=98.64  E-value=2e-08  Score=61.18  Aligned_cols=41  Identities=34%  Similarity=0.992  Sum_probs=34.2

Q ss_pred             ccccccccc---cceEEccCCCccccHhhHHHhhcCCCcccccccc
Q 028047          161 LCVVCLTRR---RISAFNPCGHLVCCRRCAISVEREASPKCPVCRM  203 (214)
Q Consensus       161 ~C~IC~~~~---~~~~~lpCgH~~~C~~C~~~~~~~~~~~CP~CR~  203 (214)
                      .|.||++..   ..+.+++|||.| |..|+..+. .....||+||+
T Consensus         1 ~C~~C~~~~~~~~~~~l~~CgH~~-C~~C~~~~~-~~~~~CP~C~k   44 (44)
T PF14634_consen    1 HCNICFEKYSEERRPRLTSCGHIF-CEKCLKKLK-GKSVKCPICRK   44 (44)
T ss_pred             CCcCcCccccCCCCeEEcccCCHH-HHHHHHhhc-CCCCCCcCCCC
Confidence            388999877   457899999999 999999987 34458999985

>smart00504 Ubox Modified RING finger domain

Probab=98.62  E-value=2.5e-08  Score=65.22  Aligned_cols=46  Identities=20%  Similarity=0.192  Sum_probs=41.1

Q ss_pred             cccccccccccceEEccCCCccccHhhHHHhhcCCCcccccccccccc
Q 028047          160 QLCVVCLTRRRISAFNPCGHLVCCRRCAISVEREASPKCPVCRMTVRS  207 (214)
Q Consensus       160 ~~C~IC~~~~~~~~~lpCgH~~~C~~C~~~~~~~~~~~CP~CR~~i~~  207 (214)
                      ..|+||.+...+++.+||||+| |..|+..+... ...||+|+.+++.
T Consensus         2 ~~Cpi~~~~~~~Pv~~~~G~v~-~~~~i~~~~~~-~~~cP~~~~~~~~   47 (63)
T smart00504        2 FLCPISLEVMKDPVILPSGQTY-ERRAIEKWLLS-HGTDPVTGQPLTH   47 (63)
T ss_pred             cCCcCCCCcCCCCEECCCCCEE-eHHHHHHHHHH-CCCCCCCcCCCCh
Confidence            4699999999999999999999 89999999865 5689999998843

Modified RING finger domain, without the full complement of Zn2+-binding ligands. Probable involvement in E2-dependent ubiquitination.

>KOG2164 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=98.61  E-value=1.9e-08  Score=89.10  Aligned_cols=53  Identities=25%  Similarity=0.711  Sum_probs=45.7

Q ss_pred             ccccccccccccceEEccCCCccccHhhHHHhhcCC----Ccccccccccccc--eEEee
Q 028047          159 GQLCVVCLTRRRISAFNPCGHLVCCRRCAISVEREA----SPKCPVCRMTVRS--SMRIY  212 (214)
Q Consensus       159 ~~~C~IC~~~~~~~~~lpCgH~~~C~~C~~~~~~~~----~~~CP~CR~~i~~--~~~i~  212 (214)
                      +..|+||++.+.-++.+.|||.| |..|+.++|...    ...||+||..|..  +.+++
T Consensus       186 ~~~CPICL~~~~~p~~t~CGHiF-C~~CiLqy~~~s~~~~~~~CPiC~s~I~~kdl~pv~  244 (513)
T KOG2164|consen  186 DMQCPICLEPPSVPVRTNCGHIF-CGPCILQYWNYSAIKGPCSCPICRSTITLKDLLPVF  244 (513)
T ss_pred             CCcCCcccCCCCcccccccCcee-eHHHHHHHHhhhcccCCccCCchhhhccccceeeee
Confidence            67999999999999999999999 789999998632    3569999999987  66665

>smart00184 RING Ring finger

Probab=98.61  E-value=2.3e-08  Score=58.17  Aligned_cols=39  Identities=33%  Similarity=0.936  Sum_probs=34.2

Q ss_pred             cccccccccceEEccCCCccccHhhHHHhhcCCCcccccc
Q 028047          162 CVVCLTRRRISAFNPCGHLVCCRRCAISVEREASPKCPVC  201 (214)
Q Consensus       162 C~IC~~~~~~~~~lpCgH~~~C~~C~~~~~~~~~~~CP~C  201 (214)
                      |.||++...+++.++|||.| |..|+..+.......||+|
T Consensus         1 C~iC~~~~~~~~~~~C~H~~-c~~C~~~~~~~~~~~CP~C   39 (39)
T smart00184        1 CPICLEELKDPVVLPCGHTF-CRSCIRKWLKSGNNTCPIC   39 (39)
T ss_pred             CCcCccCCCCcEEecCCChH-HHHHHHHHHHhCcCCCCCC
Confidence            78999999999999999999 8999999876445579987

E3 ubiquitin-protein ligase activity is intrinsic to the RING domain of c-Cbl and is likely to be a general function of this domain; Various RING fingers exhibit binding activity towards E2 ubiquitin-conjugating enzymes (Ubc' s)

>COG5243 HRD1 HRD ubiquitin ligase complex, ER membrane component [Posttranslational modification, protein turnover, chaperones]

Probab=98.56  E-value=6.1e-08  Score=82.82  Aligned_cols=47  Identities=26%  Similarity=0.689  Sum_probs=38.2

Q ss_pred             ccccccccccccc-------------cceEEccCCCccccHhhHHHhhcCCCcccccccccc
Q 028047          157 PDGQLCVVCLTRR-------------RISAFNPCGHLVCCRRCAISVEREASPKCPVCRMTV  205 (214)
Q Consensus       157 ~~~~~C~IC~~~~-------------~~~~~lpCgH~~~C~~C~~~~~~~~~~~CP~CR~~i  205 (214)
                      .++..|.||+|+.             +.+.-+||||.++ ..|.+.|.++ ...||+||.++
T Consensus       285 n~D~~C~ICmde~~h~~~~~~~~~~~~~pKrLpCGHilH-l~CLknW~ER-qQTCPICr~p~  344 (491)
T COG5243         285 NSDRTCTICMDEMFHPDHEPLPRGLDMTPKRLPCGHILH-LHCLKNWLER-QQTCPICRRPV  344 (491)
T ss_pred             CCCCeEEEecccccCCCCccCcccccCCcccccccceee-HHHHHHHHHh-ccCCCcccCcc
Confidence            4567999999972             2356799999997 8999999854 45899999984

>TIGR00599 rad18 DNA repair protein rad18

Probab=98.55  E-value=3.5e-08  Score=86.59  Aligned_cols=53  Identities=23%  Similarity=0.582  Sum_probs=45.5

Q ss_pred             cCCCccccccccccccccceEEccCCCccccHhhHHHhhcCCCcccccccccccc
Q 028047          153 AGDIPDGQLCVVCLTRRRISAFNPCGHLVCCRRCAISVEREASPKCPVCRMTVRS  207 (214)
Q Consensus       153 ~~~~~~~~~C~IC~~~~~~~~~lpCgH~~~C~~C~~~~~~~~~~~CP~CR~~i~~  207 (214)
                      ...++....|.||++.+.++++++|||.| |..|+..++.. ...||+||..+..
T Consensus        20 l~~Le~~l~C~IC~d~~~~PvitpCgH~F-Cs~CI~~~l~~-~~~CP~Cr~~~~~   72 (397)
T TIGR00599        20 LYPLDTSLRCHICKDFFDVPVLTSCSHTF-CSLCIRRCLSN-QPKCPLCRAEDQE   72 (397)
T ss_pred             ccccccccCCCcCchhhhCccCCCCCCch-hHHHHHHHHhC-CCCCCCCCCcccc
Confidence            44566778999999999999999999999 99999998854 3479999998764

This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).

>COG5574 PEX10 RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=98.51  E-value=3.8e-08  Score=80.61  Aligned_cols=48  Identities=31%  Similarity=0.827  Sum_probs=41.0

Q ss_pred             ccccccccccccceEEccCCCccccHhhHHH-hhcCCCcccccccccccc
Q 028047          159 GQLCVVCLTRRRISAFNPCGHLVCCRRCAIS-VEREASPKCPVCRMTVRS  207 (214)
Q Consensus       159 ~~~C~IC~~~~~~~~~lpCgH~~~C~~C~~~-~~~~~~~~CP~CR~~i~~  207 (214)
                      +..|+||++.+..+..+||||+| |..|+.. |..+....||.||+.+..
T Consensus       215 d~kC~lC~e~~~~ps~t~CgHlF-C~~Cl~~~~t~~k~~~CplCRak~~p  263 (271)
T COG5574         215 DYKCFLCLEEPEVPSCTPCGHLF-CLSCLLISWTKKKYEFCPLCRAKVYP  263 (271)
T ss_pred             ccceeeeecccCCcccccccchh-hHHHHHHHHHhhccccCchhhhhccc
Confidence            56899999999999999999999 8999998 665544459999998653

>PF13445 zf-RING_UBOX: RING-type zinc-finger; PDB: 2CT2_A

Probab=98.47  E-value=6.7e-08  Score=58.38  Aligned_cols=30  Identities=27%  Similarity=0.853  Sum_probs=20.8

Q ss_pred             cccccccccc----eEEccCCCccccHhhHHHhhcC
Q 028047          162 CVVCLTRRRI----SAFNPCGHLVCCRRCAISVERE  193 (214)
Q Consensus       162 C~IC~~~~~~----~~~lpCgH~~~C~~C~~~~~~~  193 (214)
                      |+||++ +.+    ++.|+|||++ |.+|+.++...
T Consensus         1 CpIc~e-~~~~~n~P~~L~CGH~~-c~~cl~~l~~~   34 (43)
T PF13445_consen    1 CPICKE-FSTEENPPMVLPCGHVF-CKDCLQKLSKK   34 (43)
T ss_dssp             -TTT-----TTSS-EEE-SSS-EE-EHHHHHHHHHH
T ss_pred             CCcccc-ccCCCCCCEEEeCccHH-HHHHHHHHHhc
Confidence            899999 777    8999999999 99999999863

>COG5540 RING-finger-containing ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=98.36  E-value=1.7e-07  Score=78.24  Aligned_cols=48  Identities=29%  Similarity=0.567  Sum_probs=40.0

Q ss_pred             ccccccccccccc---ceEEccCCCccccHhhHHHhhcCCCccccccccccc
Q 028047          158 DGQLCVVCLTRRR---ISAFNPCGHLVCCRRCAISVEREASPKCPVCRMTVR  206 (214)
Q Consensus       158 ~~~~C~IC~~~~~---~~~~lpCgH~~~C~~C~~~~~~~~~~~CP~CR~~i~  206 (214)
                      -+-.|+||++++.   ..+.+||.|.|| ..|+.+|....+..||+||.++.
T Consensus       322 ~GveCaICms~fiK~d~~~vlPC~H~FH-~~Cv~kW~~~y~~~CPvCrt~iP  372 (374)
T COG5540         322 KGVECAICMSNFIKNDRLRVLPCDHRFH-VGCVDKWLLGYSNKCPVCRTAIP  372 (374)
T ss_pred             CCceEEEEhhhhcccceEEEeccCceec-hhHHHHHHhhhcccCCccCCCCC
Confidence            3569999999764   367889999997 89999998655678999999875

>PF12678 zf-rbx1: RING-H2 zinc finger; InterPro: IPR024766 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=98.33  E-value=3.7e-07  Score=61.72  Aligned_cols=40  Identities=28%  Similarity=0.761  Sum_probs=30.7

Q ss_pred             ccccccccc-------------cceEEccCCCccccHhhHHHhhcCCCccccccc
Q 028047          161 LCVVCLTRR-------------RISAFNPCGHLVCCRRCAISVEREASPKCPVCR  202 (214)
Q Consensus       161 ~C~IC~~~~-------------~~~~~lpCgH~~~C~~C~~~~~~~~~~~CP~CR  202 (214)
                      .|.||++..             ...+..+|||.|+ ..|+.+|... +..||+||
T Consensus        21 ~C~IC~~~l~~~~~~~~~~~~~~~i~~~~C~H~FH-~~Ci~~Wl~~-~~~CP~CR   73 (73)
T PF12678_consen   21 NCAICREPLEDPCPECQAPQDECPIVWGPCGHIFH-FHCISQWLKQ-NNTCPLCR   73 (73)
T ss_dssp             BETTTTSBTTSTTCCHHHCTTTS-EEEETTSEEEE-HHHHHHHHTT-SSB-TTSS
T ss_pred             cccccChhhhChhhhhcCCccccceEecccCCCEE-HHHHHHHHhc-CCcCCCCC
Confidence            499999876             2345678999995 9999999854 44899998

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This domain constitutes a conserved region found in proteins that participate in diverse functions relevant to chromosome metabolism and cell cycle control [].The domain contains 8 cysteine/ histidine residues which are proposed to be the conserved residues involved in zinc binding.; PDB: 4A0C_D 4A0L_I 4A0K_B 2ECL_A 1LDK_C 3RTR_F 3DQV_Y 1U6G_B 1LDJ_B 2HYE_D ....

>KOG1785 consensus Tyrosine kinase negative regulator CBL [Defense mechanisms]

Probab=98.33  E-value=1.8e-07  Score=80.71  Aligned_cols=51  Identities=27%  Similarity=0.841  Sum_probs=45.0

Q ss_pred             cccccccccccceEEccCCCccccHhhHHHhhcCC-CcccccccccccceEEe
Q 028047          160 QLCVVCLTRRRISAFNPCGHLVCCRRCAISVEREA-SPKCPVCRMTVRSSMRI  211 (214)
Q Consensus       160 ~~C~IC~~~~~~~~~lpCgH~~~C~~C~~~~~~~~-~~~CP~CR~~i~~~~~i  211 (214)
                      .+|.||-++.+++.+-||||.. |..|+..|.... ...||.||..|.+.-+|
T Consensus       370 eLCKICaendKdvkIEPCGHLl-Ct~CLa~WQ~sd~gq~CPFCRcEIKGte~v  421 (563)
T KOG1785|consen  370 ELCKICAENDKDVKIEPCGHLL-CTSCLAAWQDSDEGQTCPFCRCEIKGTEPV  421 (563)
T ss_pred             HHHHHhhccCCCcccccccchH-HHHHHHhhcccCCCCCCCceeeEeccccce
Confidence            4899999999999999999999 999999998543 56899999999886554

>PF04564 U-box: U-box domain; InterPro: IPR003613 Quality control of intracellular proteins is essential for cellular homeostasis

Probab=98.31  E-value=6.7e-07  Score=60.43  Aligned_cols=50  Identities=22%  Similarity=0.250  Sum_probs=40.6

Q ss_pred             ccccccccccccccceEEccCCCccccHhhHHHhhcCCCcccccccccccc
Q 028047          157 PDGQLCVVCLTRRRISAFNPCGHLVCCRRCAISVEREASPKCPVCRMTVRS  207 (214)
Q Consensus       157 ~~~~~C~IC~~~~~~~~~lpCgH~~~C~~C~~~~~~~~~~~CP~CR~~i~~  207 (214)
                      ++...|+|+.+-..+++.+|+||.| ++.|+.+|.......||+|+.++..
T Consensus         2 P~~f~CpIt~~lM~dPVi~~~G~ty-er~~I~~~l~~~~~~~P~t~~~l~~   51 (73)
T PF04564_consen    2 PDEFLCPITGELMRDPVILPSGHTY-ERSAIERWLEQNGGTDPFTRQPLSE   51 (73)
T ss_dssp             SGGGB-TTTSSB-SSEEEETTSEEE-EHHHHHHHHCTTSSB-TTT-SB-SG
T ss_pred             CcccCCcCcCcHhhCceeCCcCCEE-cHHHHHHHHHcCCCCCCCCCCcCCc
Confidence            4677999999999999999999999 8999999997767789999998875

Molecular chaperones recognise and contribute to the refolding of misfolded or unfolded proteins, whereas the ubiquitin-proteasome system mediates the degradation of such abnormal proteins. Ubiquitin-protein ligases (E3s) determine the substrate specificity for ubiquitylation and have been classified into HECT and RING-finger families. More recently, however, U-box proteins, which contain a domain (the U box) of about 70 amino acids that is conserved from yeast to humans, have been identified as a new type of E3 []. Members of the U-box family of proteins constitute a class of ubiquitin-protein ligases (E3s) distinct from the HECT-type and RING finger-containing E3 families []. Using yeast two-hybrid technology, all mammalian U-box proteins have been reported to interact with molecular chaperones or co-chaperones, including Hsp90, Hsp70, DnaJc7, EKN1, CRN, and VCP. This suggests that the function of U box-type E3s is to mediate the degradation of unfolded or misfolded proteins in conjunction with molecular chaperones as receptors that recognise such abnormal proteins [, ]. Unlike the RING finger domain, IPR001841 from INTERPRO, that is stabilised by Zn2+ ions coordinated by the cysteines and a histidine, the U-box scaffold is probably stabilised by a system of salt-bridges and hydrogen bonds. The charged and polar residues that participate in this network of bonds are more strongly conserved in the U-box proteins than in classic RING fingers, which supports their role in maintaining the stability of the U box. Thus, the U box appears to have evolved from a RING finger domain by appropriation of a new set of residues required to stabilise its structure, concomitant with the loss of the original, metal-chelating residues [].; GO: 0004842 ubiquitin-protein ligase activity, 0016567 protein ubiquitination, 0000151 ubiquitin ligase complex; PDB: 1T1H_A 2C2L_D 2C2V_V 1WGM_A 2KR4_A 3L1Z_B 3L1X_A 2KRE_A 3M63_A 2QIZ_A ....

>KOG1100 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=98.28  E-value=2.3e-07  Score=74.93  Aligned_cols=48  Identities=35%  Similarity=0.758  Sum_probs=43.1

Q ss_pred             ccccccccccceEEccCCCccccHhhHHHhhcCCCcccccccccccceEEeee
Q 028047          161 LCVVCLTRRRISAFNPCGHLVCCRRCAISVEREASPKCPVCRMTVRSSMRIYF  213 (214)
Q Consensus       161 ~C~IC~~~~~~~~~lpCgH~~~C~~C~~~~~~~~~~~CP~CR~~i~~~~~i~~  213 (214)
                      .|..|..+...++++||.|.++|..|.....     .||+|+.+....+.+|.
T Consensus       160 ~Cr~C~~~~~~VlllPCrHl~lC~~C~~~~~-----~CPiC~~~~~s~~~v~~  207 (207)
T KOG1100|consen  160 SCRKCGEREATVLLLPCRHLCLCGICDESLR-----ICPICRSPKTSSVEVNF  207 (207)
T ss_pred             cceecCcCCceEEeecccceEecccccccCc-----cCCCCcChhhceeeccC
Confidence            4999999999999999999999999987643     79999999999888874

>KOG0287 consensus Postreplication repair protein RAD18 [Replication, recombination and repair]

Probab=98.27  E-value=2.5e-07  Score=78.27  Aligned_cols=51  Identities=29%  Similarity=0.690  Sum_probs=43.9

Q ss_pred             CCccccccccccccccceEEccCCCccccHhhHHHhhcCCCcccccccccccc
Q 028047          155 DIPDGQLCVVCLTRRRISAFNPCGHLVCCRRCAISVEREASPKCPVCRMTVRS  207 (214)
Q Consensus       155 ~~~~~~~C~IC~~~~~~~~~lpCgH~~~C~~C~~~~~~~~~~~CP~CR~~i~~  207 (214)
                      .+.+-..|-||.+.++.++++||||.| |.-|+..+.. ..+.||.|+..+..
T Consensus        19 ~lD~lLRC~IC~eyf~ip~itpCsHtf-CSlCIR~~L~-~~p~CP~C~~~~~E   69 (442)
T KOG0287|consen   19 TLDDLLRCGICFEYFNIPMITPCSHTF-CSLCIRKFLS-YKPQCPTCCVTVTE   69 (442)
T ss_pred             hhHHHHHHhHHHHHhcCceeccccchH-HHHHHHHHhc-cCCCCCceecccch
Confidence            345567899999999999999999999 9999999984 35689999988753

>KOG0978 consensus E3 ubiquitin ligase involved in syntaxin degradation [Posttranslational modification, protein turnover, chaperones]

Probab=98.26  E-value=1.4e-07  Score=87.19  Aligned_cols=56  Identities=29%  Similarity=0.612  Sum_probs=47.0

Q ss_pred             CccccccccccccccceEEccCCCccccHhhHHHhhcCCCcccccccccccc--eEEee
Q 028047          156 IPDGQLCVVCLTRRRISAFNPCGHLVCCRRCAISVEREASPKCPVCRMTVRS--SMRIY  212 (214)
Q Consensus       156 ~~~~~~C~IC~~~~~~~~~lpCgH~~~C~~C~~~~~~~~~~~CP~CR~~i~~--~~~i~  212 (214)
                      ...-..|++|-++++++++..|||+| |..|+.....-...+||.|..+|..  +.+||
T Consensus       640 yK~~LkCs~Cn~R~Kd~vI~kC~H~F-C~~Cvq~r~etRqRKCP~Cn~aFganDv~~I~  697 (698)
T KOG0978|consen  640 YKELLKCSVCNTRWKDAVITKCGHVF-CEECVQTRYETRQRKCPKCNAAFGANDVHRIH  697 (698)
T ss_pred             HHhceeCCCccCchhhHHHHhcchHH-HHHHHHHHHHHhcCCCCCCCCCCCcccccccC
Confidence            34456999999999999999999999 9999998765445689999999864  56666

>KOG2177 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=98.22  E-value=4e-07  Score=76.27  Aligned_cols=47  Identities=34%  Similarity=0.762  Sum_probs=40.6

Q ss_pred             CCccccccccccccccceEEccCCCccccHhhHHHhhcCCCcccccccc
Q 028047          155 DIPDGQLCVVCLTRRRISAFNPCGHLVCCRRCAISVEREASPKCPVCRM  203 (214)
Q Consensus       155 ~~~~~~~C~IC~~~~~~~~~lpCgH~~~C~~C~~~~~~~~~~~CP~CR~  203 (214)
                      ...+...|+||++.++++.++||||.| |..|+..++. ....||.||.
T Consensus         9 ~~~~~~~C~iC~~~~~~p~~l~C~H~~-c~~C~~~~~~-~~~~Cp~cr~   55 (386)
T KOG2177|consen    9 VLQEELTCPICLEYFREPVLLPCGHNF-CRACLTRSWE-GPLSCPVCRP   55 (386)
T ss_pred             hccccccChhhHHHhhcCccccccchH-hHHHHHHhcC-CCcCCcccCC
Confidence            345677999999999999999999999 9999999986 4457999993

>COG5432 RAD18 RING-finger-containing E3 ubiquitin ligase [Signal transduction mechanisms]

Probab=98.20  E-value=6.4e-07  Score=74.37  Aligned_cols=50  Identities=30%  Similarity=0.606  Sum_probs=42.5

Q ss_pred             CCccccccccccccccceEEccCCCccccHhhHHHhhcCCCccccccccccc
Q 028047          155 DIPDGQLCVVCLTRRRISAFNPCGHLVCCRRCAISVEREASPKCPVCRMTVR  206 (214)
Q Consensus       155 ~~~~~~~C~IC~~~~~~~~~lpCgH~~~C~~C~~~~~~~~~~~CP~CR~~i~  206 (214)
                      .+.....|-||.+..+.++..+|||.| |.-|+..... ..+.||+||.+..
T Consensus        21 ~LDs~lrC~IC~~~i~ip~~TtCgHtF-CslCIR~hL~-~qp~CP~Cr~~~~   70 (391)
T COG5432          21 GLDSMLRCRICDCRISIPCETTCGHTF-CSLCIRRHLG-TQPFCPVCREDPC   70 (391)
T ss_pred             cchhHHHhhhhhheeecceecccccch-hHHHHHHHhc-CCCCCccccccHH
Confidence            344566999999999999999999999 9999999984 3568999998753

>KOG0824 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=98.15  E-value=7e-07  Score=74.54  Aligned_cols=50  Identities=22%  Similarity=0.555  Sum_probs=43.0

Q ss_pred             ccccccccccccceEEccCCCccccHhhHHHhhcCCCcccccccccccceE
Q 028047          159 GQLCVVCLTRRRISAFNPCGHLVCCRRCAISVEREASPKCPVCRMTVRSSM  209 (214)
Q Consensus       159 ~~~C~IC~~~~~~~~~lpCgH~~~C~~C~~~~~~~~~~~CP~CR~~i~~~~  209 (214)
                      ...|.||+....-++.++|+|.| |..|++.........|++||.+|.+.+
T Consensus         7 ~~eC~IC~nt~n~Pv~l~C~HkF-CyiCiKGsy~ndk~~CavCR~pids~i   56 (324)
T KOG0824|consen    7 KKECLICYNTGNCPVNLYCFHKF-CYICIKGSYKNDKKTCAVCRFPIDSTI   56 (324)
T ss_pred             CCcceeeeccCCcCccccccchh-hhhhhcchhhcCCCCCceecCCCCcch
Confidence            45799999999999999999999 899998766555567999999998754

>PF12861 zf-Apc11: Anaphase-promoting complex subunit 11 RING-H2 finger

Probab=97.94  E-value=6.4e-06  Score=56.72  Aligned_cols=33  Identities=21%  Similarity=0.619  Sum_probs=26.9

Q ss_pred             EEccCCCccccHhhHHHhhcC--CCccccccccccc
Q 028047          173 AFNPCGHLVCCRRCAISVERE--ASPKCPVCRMTVR  206 (214)
Q Consensus       173 ~~lpCgH~~~C~~C~~~~~~~--~~~~CP~CR~~i~  206 (214)
                      +.-.|+|.|+ ..|+.+|.+.  .+..||+||++..
T Consensus        48 v~g~C~H~FH-~hCI~kWl~~~~~~~~CPmCR~~w~   82 (85)
T PF12861_consen   48 VWGKCSHNFH-MHCILKWLSTQSSKGQCPMCRQPWK   82 (85)
T ss_pred             eeccCccHHH-HHHHHHHHccccCCCCCCCcCCeee
Confidence            4567999996 8999999863  3568999999864

>PF14835 zf-RING_6: zf-RING of BARD1-type protein; PDB: 1JM7_B

Probab=97.92  E-value=1.8e-06  Score=55.96  Aligned_cols=45  Identities=22%  Similarity=0.673  Sum_probs=25.2

Q ss_pred             ccccccccccccccceE-EccCCCccccHhhHHHhhcCCCcccccccccc
Q 028047          157 PDGQLCVVCLTRRRISA-FNPCGHLVCCRRCAISVEREASPKCPVCRMTV  205 (214)
Q Consensus       157 ~~~~~C~IC~~~~~~~~-~lpCgH~~~C~~C~~~~~~~~~~~CP~CR~~i  205 (214)
                      ++...|.+|.+-.++++ +..|.|.| |..|+....   ...||+|+.+-
T Consensus         5 e~lLrCs~C~~~l~~pv~l~~CeH~f-Cs~Ci~~~~---~~~CPvC~~Pa   50 (65)
T PF14835_consen    5 EELLRCSICFDILKEPVCLGGCEHIF-CSSCIRDCI---GSECPVCHTPA   50 (65)
T ss_dssp             HHTTS-SSS-S--SS-B---SSS--B--TTTGGGGT---TTB-SSS--B-
T ss_pred             HHhcCCcHHHHHhcCCceeccCccHH-HHHHhHHhc---CCCCCCcCChH
Confidence            34568999999999997 57899999 999998765   34799999774

>KOG0802 consensus E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=97.88  E-value=1.2e-05  Score=74.19  Aligned_cols=47  Identities=30%  Similarity=0.721  Sum_probs=40.2

Q ss_pred             ccccccccccccccc-----eEEccCCCccccHhhHHHhhcCCCcccccccccc
Q 028047          157 PDGQLCVVCLTRRRI-----SAFNPCGHLVCCRRCAISVEREASPKCPVCRMTV  205 (214)
Q Consensus       157 ~~~~~C~IC~~~~~~-----~~~lpCgH~~~C~~C~~~~~~~~~~~CP~CR~~i  205 (214)
                      .....|.||++....     +..+||||.| +..|...|.++ ...||+||..+
T Consensus       289 ~~~~~C~IC~e~l~~~~~~~~~rL~C~Hif-h~~CL~~W~er-~qtCP~CR~~~  340 (543)
T KOG0802|consen  289 LSDELCIICLEELHSGHNITPKRLPCGHIF-HDSCLRSWFER-QQTCPTCRTVL  340 (543)
T ss_pred             hcCCeeeeechhhccccccccceeecccch-HHHHHHHHHHH-hCcCCcchhhh
Confidence            446799999998887     7899999999 69999999865 56899999843

>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]

Probab=97.82  E-value=1.1e-05  Score=70.78  Aligned_cols=46  Identities=30%  Similarity=0.645  Sum_probs=36.9

Q ss_pred             CCccccccccccccccc----eEEccCCCccccHhhHHHhhcCCCccccccccc
Q 028047          155 DIPDGQLCVVCLTRRRI----SAFNPCGHLVCCRRCAISVEREASPKCPVCRMT  204 (214)
Q Consensus       155 ~~~~~~~C~IC~~~~~~----~~~lpCgH~~~C~~C~~~~~~~~~~~CP~CR~~  204 (214)
                      .+-+-.+|+||+++.-.    .+...|.|.|+| .|+..|+.   ..||+||--
T Consensus       171 ~~tELPTCpVCLERMD~s~~gi~t~~c~Hsfh~-~cl~~w~~---~scpvcR~~  220 (493)
T KOG0804|consen  171 GLTELPTCPVCLERMDSSTTGILTILCNHSFHC-SCLMKWWD---SSCPVCRYC  220 (493)
T ss_pred             CcccCCCcchhHhhcCccccceeeeecccccch-HHHhhccc---CcChhhhhh
Confidence            34466799999998654    356789999997 99999994   589999854

>KOG0311 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=97.70  E-value=3.4e-06  Score=71.93  Aligned_cols=52  Identities=25%  Similarity=0.574  Sum_probs=43.0

Q ss_pred             CccccccccccccccceEEc-cCCCccccHhhHHHhhcCCCcccccccccccce
Q 028047          156 IPDGQLCVVCLTRRRISAFN-PCGHLVCCRRCAISVEREASPKCPVCRMTVRSS  208 (214)
Q Consensus       156 ~~~~~~C~IC~~~~~~~~~l-pCgH~~~C~~C~~~~~~~~~~~CP~CR~~i~~~  208 (214)
                      +.-+..|+||++..+..... .|+|.| |.+|+..-.+.....||.||+...+.
T Consensus        40 ~~~~v~c~icl~llk~tmttkeClhrf-c~~ci~~a~r~gn~ecptcRk~l~Sk   92 (381)
T KOG0311|consen   40 FDIQVICPICLSLLKKTMTTKECLHRF-CFDCIWKALRSGNNECPTCRKKLVSK   92 (381)
T ss_pred             hhhhhccHHHHHHHHhhcccHHHHHHH-HHHHHHHHHHhcCCCCchHHhhcccc
Confidence            34467999999998876654 599999 99999988877778899999987654

>KOG4692 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=97.65  E-value=2.1e-05  Score=67.22  Aligned_cols=48  Identities=27%  Similarity=0.662  Sum_probs=41.7

Q ss_pred             cccccccccccccceEEccCCCccccHhhHHHhhcCCCcccccccccccc
Q 028047          158 DGQLCVVCLTRRRISAFNPCGHLVCCRRCAISVEREASPKCPVCRMTVRS  207 (214)
Q Consensus       158 ~~~~C~IC~~~~~~~~~lpCgH~~~C~~C~~~~~~~~~~~CP~CR~~i~~  207 (214)
                      ++.+|+||+..+.+++|.||+|.- |+.|+.+..- +.+.|-.|+..+..
T Consensus       421 Ed~lCpICyA~pi~Avf~PC~H~S-C~~CI~qHlm-N~k~CFfCktTv~~  468 (489)
T KOG4692|consen  421 EDNLCPICYAGPINAVFAPCSHRS-CYGCITQHLM-NCKRCFFCKTTVID  468 (489)
T ss_pred             ccccCcceecccchhhccCCCCch-HHHHHHHHHh-cCCeeeEecceeee
Confidence            467999999999999999999999 9999998863 35689999988764

>PF14447 Prok-RING_4: Prokaryotic RING finger family 4

Probab=97.63  E-value=1.8e-05  Score=49.78  Aligned_cols=45  Identities=31%  Similarity=0.675  Sum_probs=37.6

Q ss_pred             ccccccccccccceEEccCCCccccHhhHHHhhcCCCcccccccccccc
Q 028047          159 GQLCVVCLTRRRISAFNPCGHLVCCRRCAISVEREASPKCPVCRMTVRS  207 (214)
Q Consensus       159 ~~~C~IC~~~~~~~~~lpCgH~~~C~~C~~~~~~~~~~~CP~CR~~i~~  207 (214)
                      ...|..|.......+++||||.. |..|.....   -+.||+|.++|+.
T Consensus         7 ~~~~~~~~~~~~~~~~~pCgH~I-~~~~f~~~r---YngCPfC~~~~~~   51 (55)
T PF14447_consen    7 EQPCVFCGFVGTKGTVLPCGHLI-CDNCFPGER---YNGCPFCGTPFEF   51 (55)
T ss_pred             ceeEEEcccccccccccccccee-eccccChhh---ccCCCCCCCcccC
Confidence            45799999998889999999999 899976654   3479999998864

>KOG0828 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=97.45  E-value=4.6e-05  Score=67.67  Aligned_cols=50  Identities=32%  Similarity=0.715  Sum_probs=38.8

Q ss_pred             cccccccccccc-----------------ccceEEccCCCccccHhhHHHhhcCCCcccccccccccc
Q 028047          157 PDGQLCVVCLTR-----------------RRISAFNPCGHLVCCRRCAISVEREASPKCPVCRMTVRS  207 (214)
Q Consensus       157 ~~~~~C~IC~~~-----------------~~~~~~lpCgH~~~C~~C~~~~~~~~~~~CP~CR~~i~~  207 (214)
                      +....|+||+..                 .++..+.||.|.|+ ..|..+|...-+-.||+||.++..
T Consensus       569 ~~t~dC~ICMt~I~l~~~~s~~~~~~~~~~~nYm~tPC~HifH-~~CL~~WMd~ykl~CPvCR~pLPp  635 (636)
T KOG0828|consen  569 RRTNDCVICMTPIDLRSTGSDCMVASMMVRRNYMLTPCHHIFH-RQCLLQWMDTYKLICPVCRCPLPP  635 (636)
T ss_pred             hccccceEeccccceeeccCcchhhhhhhhccccccchHHHHH-HHHHHHHHhhhcccCCccCCCCCC
Confidence            445689999963                 23456789999996 999999986444579999998753

>TIGR00570 cdk7 CDK-activating kinase assembly factor MAT1

Probab=97.44  E-value=7.2e-05  Score=63.55  Aligned_cols=31  Identities=32%  Similarity=0.776  Sum_probs=27.1

Q ss_pred             cCCCccccHhhHHHhhcCCCcccccccccccc
Q 028047          176 PCGHLVCCRRCAISVEREASPKCPVCRMTVRS  207 (214)
Q Consensus       176 pCgH~~~C~~C~~~~~~~~~~~CP~CR~~i~~  207 (214)
                      +|||.+ |..|+..++......||.|+.++..
T Consensus        25 ~CGH~~-C~sCv~~l~~~~~~~CP~C~~~lrk   55 (309)
T TIGR00570        25 VCGHTL-CESCVDLLFVRGSGSCPECDTPLRK   55 (309)
T ss_pred             CCCCcc-cHHHHHHHhcCCCCCCCCCCCccch
Confidence            899999 9999999987666789999988765

All proteins in this family for which functions are known are cyclin dependent protein kinases that are components of TFIIH, a complex that is involved in nucleotide excision repair and transcription initiation. Also known as MAT1 (menage a trois 1). This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).

>KOG4159 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=97.34  E-value=0.0001  Score=64.99  Aligned_cols=51  Identities=27%  Similarity=0.621  Sum_probs=43.0

Q ss_pred             CCccccccccccccccceEEccCCCccccHhhHHHhhcCCCcccccccccccc
Q 028047          155 DIPDGQLCVVCLTRRRISAFNPCGHLVCCRRCAISVEREASPKCPVCRMTVRS  207 (214)
Q Consensus       155 ~~~~~~~C~IC~~~~~~~~~lpCgH~~~C~~C~~~~~~~~~~~CP~CR~~i~~  207 (214)
                      .+..+..|.||+.....++.+||||.+ |..|+.+... ....||.||..+..
T Consensus        80 ~~~sef~c~vc~~~l~~pv~tpcghs~-c~~Cl~r~ld-~~~~cp~Cr~~l~e  130 (398)
T KOG4159|consen   80 EIRSEFECCVCSRALYPPVVTPCGHSF-CLECLDRSLD-QETECPLCRDELVE  130 (398)
T ss_pred             cccchhhhhhhHhhcCCCccccccccc-cHHHHHHHhc-cCCCCccccccccc
Confidence            345677999999999999999999999 9999888654 35679999988764

>KOG1039 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=97.32  E-value=8.4e-05  Score=64.30  Aligned_cols=52  Identities=25%  Similarity=0.584  Sum_probs=41.1

Q ss_pred             cccccccccccccceE-----E---ccCCCccccHhhHHHhhcCC------CcccccccccccceEE
Q 028047          158 DGQLCVVCLTRRRISA-----F---NPCGHLVCCRRCAISVEREA------SPKCPVCRMTVRSSMR  210 (214)
Q Consensus       158 ~~~~C~IC~~~~~~~~-----~---lpCgH~~~C~~C~~~~~~~~------~~~CP~CR~~i~~~~~  210 (214)
                      .+..|-||++...+..     +   .+|.|.+ |..|+..|....      .+.||.||.....+.+
T Consensus       160 ~~k~CGICme~i~ek~~~~~rfgilpnC~H~~-Cl~Cir~wr~~~q~~~~~sksCP~CRv~s~~v~p  225 (344)
T KOG1039|consen  160 SEKECGICMETINEKAASERRFGILPNCNHSF-CLNCIRKWRQATQFESKTSKSCPFCRVPSSFVNP  225 (344)
T ss_pred             ccccceehhhhccccchhhhhcccCCCcchhh-hhcHhHhhhhhhccccccccCCCcccCccccccc
Confidence            3568999999877666     5   7799999 999999998422      3579999998776543

>COG5236 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]

Probab=97.21  E-value=0.00029  Score=60.19  Aligned_cols=51  Identities=29%  Similarity=0.750  Sum_probs=41.0

Q ss_pred             ccccccccccccccceEEccCCCccccHhhHHHhhc-CCCcccccccccccce
Q 028047          157 PDGQLCVVCLTRRRISAFNPCGHLVCCRRCAISVER-EASPKCPVCRMTVRSS  208 (214)
Q Consensus       157 ~~~~~C~IC~~~~~~~~~lpCgH~~~C~~C~~~~~~-~~~~~CP~CR~~i~~~  208 (214)
                      +++..|.||-+...-...+||+|.. |-.|+.++.. -..+.||+||..-..+
T Consensus        59 Een~~C~ICA~~~TYs~~~PC~H~~-CH~Ca~RlRALY~~K~C~~CrTE~e~V  110 (493)
T COG5236          59 EENMNCQICAGSTTYSARYPCGHQI-CHACAVRLRALYMQKGCPLCRTETEAV  110 (493)
T ss_pred             cccceeEEecCCceEEEeccCCchH-HHHHHHHHHHHHhccCCCccccccceE
Confidence            4567999999999889999999999 8999987653 1235799999875554

>COG5152 Uncharacterized conserved protein, contains RING and CCCH-type Zn-fingers [General function prediction only]

Probab=97.13  E-value=0.00021  Score=56.50  Aligned_cols=47  Identities=28%  Similarity=0.630  Sum_probs=39.3

Q ss_pred             cccccccccccceEEccCCCccccHhhHHHhhcCCCcccccccccccce
Q 028047          160 QLCVVCLTRRRISAFNPCGHLVCCRRCAISVEREASPKCPVCRMTVRSS  208 (214)
Q Consensus       160 ~~C~IC~~~~~~~~~lpCgH~~~C~~C~~~~~~~~~~~CP~CR~~i~~~  208 (214)
                      ..|.||....+.++...|||.| |..|+.+-.+. ...|-+|.+...+.
T Consensus       197 F~C~iCKkdy~spvvt~CGH~F-C~~Cai~~y~k-g~~C~~Cgk~t~G~  243 (259)
T COG5152         197 FLCGICKKDYESPVVTECGHSF-CSLCAIRKYQK-GDECGVCGKATYGR  243 (259)
T ss_pred             eeehhchhhccchhhhhcchhH-HHHHHHHHhcc-CCcceecchhhccc
Confidence            4899999999999999999999 99999876533 45799998765543

>PF14570 zf-RING_4: RING/Ubox like zinc-binding domain; PDB: 1E4U_A 1UR6_B

Probab=96.93  E-value=0.00046  Score=42.42  Aligned_cols=43  Identities=30%  Similarity=0.762  Sum_probs=21.1

Q ss_pred             cccccccc--cceEEcc--CCCccccHhhHHHhhcCCCcccccccccc
Q 028047          162 CVVCLTRR--RISAFNP--CGHLVCCRRCAISVEREASPKCPVCRMTV  205 (214)
Q Consensus       162 C~IC~~~~--~~~~~lp--CgH~~~C~~C~~~~~~~~~~~CP~CR~~i  205 (214)
                      |++|.+..  ++..+.|  ||+.. |..|..++.......||-||.+.
T Consensus         1 cp~C~e~~d~~d~~~~PC~Cgf~I-C~~C~~~i~~~~~g~CPgCr~~Y   47 (48)
T PF14570_consen    1 CPLCDEELDETDKDFYPCECGFQI-CRFCYHDILENEGGRCPGCREPY   47 (48)
T ss_dssp             -TTTS-B--CCCTT--SSTTS-----HHHHHHHTTSS-SB-TTT--B-
T ss_pred             CCCcccccccCCCccccCcCCCcH-HHHHHHHHHhccCCCCCCCCCCC
Confidence            55666554  2333454  68888 99999999865677899999875

>KOG0297 consensus TNF receptor-associated factor [Signal transduction mechanisms]

Probab=96.88  E-value=0.00041  Score=61.46  Aligned_cols=52  Identities=29%  Similarity=0.736  Sum_probs=44.8

Q ss_pred             CccccccccccccccceEE-ccCCCccccHhhHHHhhcCCCcccccccccccceE
Q 028047          156 IPDGQLCVVCLTRRRISAF-NPCGHLVCCRRCAISVEREASPKCPVCRMTVRSSM  209 (214)
Q Consensus       156 ~~~~~~C~IC~~~~~~~~~-lpCgH~~~C~~C~~~~~~~~~~~CP~CR~~i~~~~  209 (214)
                      .+++..|++|....++++. ..|||.| |..|+..+... +..||.|+..+....
T Consensus        18 ~~~~l~C~~C~~vl~~p~~~~~cgh~f-C~~C~~~~~~~-~~~cp~~~~~~~~~~   70 (391)
T KOG0297|consen   18 LDENLLCPICMSVLRDPVQTTTCGHRF-CAGCLLESLSN-HQKCPVCRQELTQAE   70 (391)
T ss_pred             CcccccCccccccccCCCCCCCCCCcc-cccccchhhcc-CcCCcccccccchhh
Confidence            5667899999999999998 5999999 99999999865 678999998876543

>KOG2879 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=96.86  E-value=0.00085  Score=55.70  Aligned_cols=53  Identities=28%  Similarity=0.565  Sum_probs=39.9

Q ss_pred             CCccccccccccccccceEEc-cCCCccccHhhHHHhhc-CCCcccccccccccce
Q 028047          155 DIPDGQLCVVCLTRRRISAFN-PCGHLVCCRRCAISVER-EASPKCPVCRMTVRSS  208 (214)
Q Consensus       155 ~~~~~~~C~IC~~~~~~~~~l-pCgH~~~C~~C~~~~~~-~~~~~CP~CR~~i~~~  208 (214)
                      ....+.+|++|-+.+..|... +|||.+ |..|+..-.. ..+-.||.|..+...+
T Consensus       235 ~~t~~~~C~~Cg~~PtiP~~~~~C~Hiy-CY~Ci~ts~~~~asf~Cp~Cg~~~~~l  289 (298)
T KOG2879|consen  235 TGTSDTECPVCGEPPTIPHVIGKCGHIY-CYYCIATSRLWDASFTCPLCGENVEPL  289 (298)
T ss_pred             cccCCceeeccCCCCCCCeeecccccee-ehhhhhhhhcchhhcccCccCCCCcch
Confidence            344567999999999887654 599999 9999976432 2234799999887643

>KOG1813 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=96.86  E-value=0.00036  Score=58.43  Aligned_cols=46  Identities=28%  Similarity=0.658  Sum_probs=39.8

Q ss_pred             ccccccccccceEEccCCCccccHhhHHHhhcCCCcccccccccccce
Q 028047          161 LCVVCLTRRRISAFNPCGHLVCCRRCAISVEREASPKCPVCRMTVRSS  208 (214)
Q Consensus       161 ~C~IC~~~~~~~~~lpCgH~~~C~~C~~~~~~~~~~~CP~CR~~i~~~  208 (214)
                      .|-||...+.++|...|||.| |..|+.+-... ...|++|.+.+.++
T Consensus       243 ~c~icr~~f~~pVvt~c~h~f-c~~ca~~~~qk-~~~c~vC~~~t~g~  288 (313)
T KOG1813|consen  243 KCFICRKYFYRPVVTKCGHYF-CEVCALKPYQK-GEKCYVCSQQTHGS  288 (313)
T ss_pred             cccccccccccchhhcCCcee-ehhhhcccccc-CCcceecccccccc
Confidence            699999999999999999999 99999876532 45799999988764

>KOG1734 consensus Predicted RING-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=96.82  E-value=0.00059  Score=56.46  Aligned_cols=50  Identities=20%  Similarity=0.422  Sum_probs=38.2

Q ss_pred             ccccccccccccccc----------eEEccCCCccccHhhHHHhhcC-CCcccccccccccc
Q 028047          157 PDGQLCVVCLTRRRI----------SAFNPCGHLVCCRRCAISVERE-ASPKCPVCRMTVRS  207 (214)
Q Consensus       157 ~~~~~C~IC~~~~~~----------~~~lpCgH~~~C~~C~~~~~~~-~~~~CP~CR~~i~~  207 (214)
                      .++..|.||-...-.          .-.+.|+|+|+ ..|+..|..- .+..||-|+..++.
T Consensus       222 l~d~vCaVCg~~~~~s~~eegvienty~LsCnHvFH-EfCIrGWcivGKkqtCPYCKekVdl  282 (328)
T KOG1734|consen  222 LSDSVCAVCGQQIDVSVDEEGVIENTYKLSCNHVFH-EFCIRGWCIVGKKQTCPYCKEKVDL  282 (328)
T ss_pred             CCcchhHhhcchheeecchhhhhhhheeeecccchH-HHhhhhheeecCCCCCchHHHHhhH
Confidence            356799999865433          34689999997 9999999753 34579999988764

>smart00744 RINGv The RING-variant domain is a C4HC3 zinc-finger like motif found in a number of cellular and viral proteins

Probab=96.67  E-value=0.0013  Score=40.72  Aligned_cols=41  Identities=22%  Similarity=0.643  Sum_probs=31.9

Q ss_pred             ccccccc--cccceEEccCC-----CccccHhhHHHhhcCC-Cccccccc
Q 028047          161 LCVVCLT--RRRISAFNPCG-----HLVCCRRCAISVEREA-SPKCPVCR  202 (214)
Q Consensus       161 ~C~IC~~--~~~~~~~lpCg-----H~~~C~~C~~~~~~~~-~~~CP~CR  202 (214)
                      .|.||++  ...++...||.     |.++ ..|+.+|.... +..||+|+
T Consensus         1 ~CrIC~~~~~~~~~l~~PC~C~G~~~~vH-~~Cl~~W~~~~~~~~C~iC~   49 (49)
T smart00744        1 ICRICHDEGDEGDPLVSPCRCKGSLKYVH-QECLERWINESGNKTCEICK   49 (49)
T ss_pred             CccCCCCCCCCCCeeEeccccCCchhHHH-HHHHHHHHHHcCCCcCCCCC
Confidence            4889997  56677889995     7786 89999998532 45799994

Some of these proteins have been shown both in vivo and in vitro to have ubiquitin E3 ligase activity. The RING-variant domain is reminiscent of both the RING and the PHD domains and may represent an evolutionary intermediate. To describe this domain the term PHD/LAP domain has been used in the past. Extended description: The RING-variant (RINGv) domain contains a C4HC3 zinc-finger-like motif similar to the PHD domain, while some of the spacing between the Cys/His residues follow a pattern somewhat closer to that found in the RING domain. The RINGv domain, similar to the RING, PHD and LIM domains, is thought to bind two zinc ions co-ordinated by the highly conserved Cys and His residues. RING variant domain: C-x (2) -C-x(10-45)-C-x (1) -C-x (7) -H-x(2)-C-x(11-25)-C-x(2)-C As opposed to a PHD: C-x(1-2) -C-x (7-13)-C-x(2-4)-C-x(4-5)-H-x(2)-C-x(10-21)-C-x(2)-C Class

>COG5222 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]

Probab=96.37  E-value=0.0033  Score=52.88  Aligned_cols=43  Identities=30%  Similarity=0.670  Sum_probs=36.7

Q ss_pred             cccccccccccceEEcc-CCCccccHhhHHHhhcCCCcccccccc
Q 028047          160 QLCVVCLTRRRISAFNP-CGHLVCCRRCAISVEREASPKCPVCRM  203 (214)
Q Consensus       160 ~~C~IC~~~~~~~~~lp-CgH~~~C~~C~~~~~~~~~~~CP~CR~  203 (214)
                      ..|+.|....++++-.| |||.| |.+|+..........||.|..
T Consensus       275 LkCplc~~Llrnp~kT~cC~~~f-c~eci~~al~dsDf~CpnC~r  318 (427)
T COG5222         275 LKCPLCHCLLRNPMKTPCCGHTF-CDECIGTALLDSDFKCPNCSR  318 (427)
T ss_pred             ccCcchhhhhhCcccCccccchH-HHHHHhhhhhhccccCCCccc
Confidence            68999999999998885 79999 999999766555668999976

>KOG2660 consensus Locus-specific chromosome binding proteins [Function unknown]

Probab=96.37  E-value=0.00079  Score=57.26  Aligned_cols=55  Identities=20%  Similarity=0.490  Sum_probs=44.6

Q ss_pred             CCccccccccccccccceEEc-cCCCccccHhhHHHhhcCCCcccccccccccceEEe
Q 028047          155 DIPDGQLCVVCLTRRRISAFN-PCGHLVCCRRCAISVEREASPKCPVCRMTVRSSMRI  211 (214)
Q Consensus       155 ~~~~~~~C~IC~~~~~~~~~l-pCgH~~~C~~C~~~~~~~~~~~CP~CR~~i~~~~~i  211 (214)
                      ++.....|.+|.....++..+ -|-|.| |..|+.+.... ...||.|...|.+..+.
T Consensus        11 ~~n~~itC~LC~GYliDATTI~eCLHTF-CkSCivk~l~~-~~~CP~C~i~ih~t~pl   66 (331)
T KOG2660|consen   11 ELNPHITCRLCGGYLIDATTITECLHTF-CKSCIVKYLEE-SKYCPTCDIVIHKTHPL   66 (331)
T ss_pred             hcccceehhhccceeecchhHHHHHHHH-HHHHHHHHHHH-hccCCccceeccCcccc
Confidence            344566899999999998765 599999 99999998754 56899999988876543

>KOG3002 consensus Zn finger protein [General function prediction only]

Probab=96.36  E-value=0.0016  Score=55.48  Aligned_cols=45  Identities=38%  Similarity=0.868  Sum_probs=37.5

Q ss_pred             cccccccccccccceEEccC--CCccccHhhHHHhhcCCCcccccccccccce
Q 028047          158 DGQLCVVCLTRRRISAFNPC--GHLVCCRRCAISVEREASPKCPVCRMTVRSS  208 (214)
Q Consensus       158 ~~~~C~IC~~~~~~~~~lpC--gH~~~C~~C~~~~~~~~~~~CP~CR~~i~~~  208 (214)
                      +-..|+||.+....+++ .|  ||.. |..|-..+.    ..||.||.+|..+
T Consensus        47 ~lleCPvC~~~l~~Pi~-QC~nGHla-CssC~~~~~----~~CP~Cr~~~g~~   93 (299)
T KOG3002|consen   47 DLLDCPVCFNPLSPPIF-QCDNGHLA-CSSCRTKVS----NKCPTCRLPIGNI   93 (299)
T ss_pred             hhccCchhhccCcccce-ecCCCcEe-hhhhhhhhc----ccCCccccccccH
Confidence            34589999999999887 66  7999 999987765    4899999998753

>KOG0826 consensus Predicted E3 ubiquitin ligase involved in peroxisome organization [Posttranslational modification, protein turnover, chaperones]

Probab=96.28  E-value=0.0084  Score=51.08  Aligned_cols=56  Identities=29%  Similarity=0.597  Sum_probs=41.2

Q ss_pred             CccccccccccccccceEEcc-CCCccccHhhHHHhhcCCCccccc--ccccccceEEeee
Q 028047          156 IPDGQLCVVCLTRRRISAFNP-CGHLVCCRRCAISVEREASPKCPV--CRMTVRSSMRIYF  213 (214)
Q Consensus       156 ~~~~~~C~IC~~~~~~~~~lp-CgH~~~C~~C~~~~~~~~~~~CP~--CR~~i~~~~~i~~  213 (214)
                      ..+...|+||+....++..+. -|-+| |..|+.+... ..+.||+  |-..+...+|+|.
T Consensus       297 ~~~~~~CpvClk~r~Nptvl~vSGyVf-CY~Ci~~Yv~-~~~~CPVT~~p~~v~~l~rl~~  355 (357)
T KOG0826|consen  297 PPDREVCPVCLKKRQNPTVLEVSGYVF-CYPCIFSYVV-NYGHCPVTGYPASVDHLIRLFN  355 (357)
T ss_pred             CCccccChhHHhccCCCceEEecceEE-eHHHHHHHHH-hcCCCCccCCcchHHHHHHHhc
Confidence            345679999999887765554 58888 9999999885 4568998  4445556666654

>KOG1002 consensus Nucleotide excision repair protein RAD16 [Replication, recombination and repair]

Probab=95.79  E-value=0.0033  Score=56.70  Aligned_cols=48  Identities=23%  Similarity=0.526  Sum_probs=38.9

Q ss_pred             ccccccccccccccceEEccCCCccccHhhHHHhh----cCCCcccccccccc
Q 028047          157 PDGQLCVVCLTRRRISAFNPCGHLVCCRRCAISVE----REASPKCPVCRMTV  205 (214)
Q Consensus       157 ~~~~~C~IC~~~~~~~~~lpCgH~~~C~~C~~~~~----~~~~~~CP~CR~~i  205 (214)
                      .....|.+|.+...+++...|.|.| |+-|+..+.    ...+-+||+|-...
T Consensus       534 k~~~~C~lc~d~aed~i~s~ChH~F-CrlCi~eyv~~f~~~~nvtCP~C~i~L  585 (791)
T KOG1002|consen  534 KGEVECGLCHDPAEDYIESSCHHKF-CRLCIKEYVESFMENNNVTCPVCHIGL  585 (791)
T ss_pred             cCceeecccCChhhhhHhhhhhHHH-HHHHHHHHHHhhhcccCCCCccccccc
Confidence            3456899999999999999999999 999996554    34456899996543

>KOG0825 consensus PHD Zn-finger protein [General function prediction only]

Probab=95.78  E-value=0.0026  Score=59.73  Aligned_cols=50  Identities=24%  Similarity=0.374  Sum_probs=37.2

Q ss_pred             ccccccccccccce---EEccCCCccccHhhHHHhhcCCCcccccccccccceEE
Q 028047          159 GQLCVVCLTRRRIS---AFNPCGHLVCCRRCAISVEREASPKCPVCRMTVRSSMR  210 (214)
Q Consensus       159 ~~~C~IC~~~~~~~---~~lpCgH~~~C~~C~~~~~~~~~~~CP~CR~~i~~~~~  210 (214)
                      ...|++|+....+-   .-.+|+|.| |..|+..|.+. ...||+||..+..++.
T Consensus       123 ~~~CP~Ci~s~~DqL~~~~k~c~H~F-C~~Ci~sWsR~-aqTCPiDR~EF~~v~V  175 (1134)
T KOG0825|consen  123 ENQCPNCLKSCNDQLEESEKHTAHYF-CEECVGSWSRC-AQTCPVDRGEFGEVKV  175 (1134)
T ss_pred             hhhhhHHHHHHHHHhhcccccccccc-HHHHhhhhhhh-cccCchhhhhhheeee
Confidence            34677777655543   236899999 89999999853 4589999998877643

>PF11789 zf-Nse: Zinc-finger of the MIZ type in Nse subunit; PDB: 2YU4_A 3HTK_C

Probab=95.67  E-value=0.01  Score=38.00  Aligned_cols=42  Identities=21%  Similarity=0.404  Sum_probs=28.5

Q ss_pred             cccccccccccccceEE-ccCCCccccHhhHHHhhc-CCCccccc
Q 028047          158 DGQLCVVCLTRRRISAF-NPCGHLVCCRRCAISVER-EASPKCPV  200 (214)
Q Consensus       158 ~~~~C~IC~~~~~~~~~-lpCgH~~~C~~C~~~~~~-~~~~~CP~  200 (214)
                      -...|+|.+..+.+++. ..|||.| ..+.+..+.. .....||+
T Consensus        10 ~~~~CPiT~~~~~~PV~s~~C~H~f-ek~aI~~~i~~~~~~~CPv   53 (57)
T PF11789_consen   10 ISLKCPITLQPFEDPVKSKKCGHTF-EKEAILQYIQRNGSKRCPV   53 (57)
T ss_dssp             --SB-TTTSSB-SSEEEESSS--EE-EHHHHHHHCTTTS-EE-SC
T ss_pred             eccCCCCcCChhhCCcCcCCCCCee-cHHHHHHHHHhcCCCCCCC
Confidence            35689999999999986 5899999 7999999883 33457998

>KOG1814 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=95.65  E-value=0.0051  Score=53.88  Aligned_cols=33  Identities=24%  Similarity=0.590  Sum_probs=27.8

Q ss_pred             ccccccccccccc---eEEccCCCccccHhhHHHhhc
Q 028047          159 GQLCVVCLTRRRI---SAFNPCGHLVCCRRCAISVER  192 (214)
Q Consensus       159 ~~~C~IC~~~~~~---~~~lpCgH~~~C~~C~~~~~~  192 (214)
                      ...|.||++...-   ..++||+|++ |..|......
T Consensus       184 lf~C~ICf~e~~G~~c~~~lpC~Hv~-Ck~C~kdY~~  219 (445)
T KOG1814|consen  184 LFDCCICFEEQMGQHCFKFLPCSHVF-CKSCLKDYFT  219 (445)
T ss_pred             cccceeeehhhcCcceeeecccchHH-HHHHHHHHHH
Confidence            4579999998754   6799999999 9999998754

>PF07800 DUF1644: Protein of unknown function (DUF1644); InterPro: IPR012866 This family consists of sequences found in a number of hypothetical plant proteins of unknown function

Probab=95.62  E-value=0.012  Score=45.19  Aligned_cols=53  Identities=21%  Similarity=0.563  Sum_probs=37.2

Q ss_pred             ccccccccccccceEEccCC-Ccc-----cc------HhhHHHhhcC------------------------------CCc
Q 028047          159 GQLCVVCLTRRRISAFNPCG-HLV-----CC------RRCAISVERE------------------------------ASP  196 (214)
Q Consensus       159 ~~~C~IC~~~~~~~~~lpCg-H~~-----~C------~~C~~~~~~~------------------------------~~~  196 (214)
                      +..|+|||+-+=++|+|-|. |--     .|      ..|++++.+.                              ...
T Consensus         2 d~~CpICme~PHNAVLLlCSS~~kgcRpymc~Ts~rhSNCLdqfkka~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L   81 (162)
T PF07800_consen    2 DVTCPICMEHPHNAVLLLCSSHEKGCRPYMCDTSYRHSNCLDQFKKAYGKSSSSSSQSSSSAPSDSSSSESSESQEQPEL   81 (162)
T ss_pred             CccCceeccCCCceEEEEeccccCCccccccCCccchhHHHHHHHHHhcCCCCccccccccCcCCCcccccccccccccc
Confidence            45899999999999999885 321     12      4677766430                              023


Q ss_pred             ccccccccccceEEe
Q 028047          197 KCPVCRMTVRSSMRI  211 (214)
Q Consensus       197 ~CP~CR~~i~~~~~i  211 (214)
                      .||+||..|.+-..+
T Consensus        82 ~CPLCRG~V~GWtvv   96 (162)
T PF07800_consen   82 ACPLCRGEVKGWTVV   96 (162)
T ss_pred             cCccccCceeceEEc
Confidence            599999999876544

The region of interest contains nine highly conserved cysteine residues and is approximately 160 amino acids in length, which probably represent a zinc-binding domain.

>KOG1001 consensus Helicase-like transcription factor HLTF/DNA helicase RAD5, DEAD-box superfamily [Transcription; Replication, recombination and repair]

Probab=95.51  E-value=0.0056  Score=57.80  Aligned_cols=46  Identities=24%  Similarity=0.678  Sum_probs=38.2

Q ss_pred             cccccccccccceEEccCCCccccHhhHHHhhcCC-Ccccccccccccc
Q 028047          160 QLCVVCLTRRRISAFNPCGHLVCCRRCAISVEREA-SPKCPVCRMTVRS  207 (214)
Q Consensus       160 ~~C~IC~~~~~~~~~lpCgH~~~C~~C~~~~~~~~-~~~CP~CR~~i~~  207 (214)
                      ..|.+|.+ ...++..+|||.+ |.+|........ ...||+||..+..
T Consensus       455 ~~c~ic~~-~~~~~it~c~h~~-c~~c~~~~i~~~~~~~~~~cr~~l~~  501 (674)
T KOG1001|consen  455 HWCHICCD-LDSFFITRCGHDF-CVECLKKSIQQSENAPCPLCRNVLKE  501 (674)
T ss_pred             cccccccc-cccceeecccchH-HHHHHHhccccccCCCCcHHHHHHHH
Confidence            68999999 8888999999999 999998876532 3369999987653

>PF05290 Baculo_IE-1: Baculovirus immediate-early protein (IE-0); InterPro: IPR007954 This entry contains the Baculovirus immediate-early protein IE-0

Probab=95.47  E-value=0.0076  Score=44.86  Aligned_cols=50  Identities=28%  Similarity=0.646  Sum_probs=40.6

Q ss_pred             ccccccccccccceEEcc----CCCccccHhhHHHhhc--CCCcccccccccccceE
Q 028047          159 GQLCVVCLTRRRISAFNP----CGHLVCCRRCAISVER--EASPKCPVCRMTVRSSM  209 (214)
Q Consensus       159 ~~~C~IC~~~~~~~~~lp----CgH~~~C~~C~~~~~~--~~~~~CP~CR~~i~~~~  209 (214)
                      -.+|-||.+...+..||.    ||-.. |..|...+|+  ...+.||+|+.++.+.-
T Consensus        80 lYeCnIC~etS~ee~FLKPneCCgY~i-Cn~Cya~LWK~~~~ypvCPvCkTSFKss~  135 (140)
T PF05290_consen   80 LYECNICKETSAEERFLKPNECCGYSI-CNACYANLWKFCNLYPVCPVCKTSFKSSS  135 (140)
T ss_pred             ceeccCcccccchhhcCCcccccchHH-HHHHHHHHHHHcccCCCCCcccccccccc
Confidence            347999999988888863    89887 8999999986  33457999999987654

>PF11793 FANCL_C: FANCL C-terminal domain; PDB: 3K1L_A

Probab=95.41  E-value=0.0042  Score=41.45  Aligned_cols=47  Identities=19%  Similarity=0.365  Sum_probs=22.6

Q ss_pred             ccccccccccc-c---eEE----ccCCCccccHhhHHHhhcC----------CCcccccccccccc
Q 028047          160 QLCVVCLTRRR-I---SAF----NPCGHLVCCRRCAISVERE----------ASPKCPVCRMTVRS  207 (214)
Q Consensus       160 ~~C~IC~~~~~-~---~~~----lpCgH~~~C~~C~~~~~~~----------~~~~CP~CR~~i~~  207 (214)
                      ..|.||+...- +   +..    -.|++.|| ..|+..|...          ....||.|+.+|+-
T Consensus         3 ~~C~IC~~~~~~~~~~p~~~C~n~~C~~~fH-~~CL~~wf~~~~~~~~~~~~~~G~CP~C~~~i~~   67 (70)
T PF11793_consen    3 LECGICYSYRLDDGEIPDVVCPNPSCGKKFH-LLCLSEWFLSLEKSRQSFIPIFGECPYCSSPISW   67 (70)
T ss_dssp             -S-SSS--SS-TT-----B--S-TT----B--SGGGHHHHHHHHSSS-TTT--EEE-TTT-SEEEG
T ss_pred             CCCCcCCcEecCCCCcCceEcCCcccCCHHH-HHHHHHHHHHcccCCeeecccccCCcCCCCeeeE
Confidence            47999997643 1   111    36888887 8999999641          12469999999863

>COG5175 MOT2 Transcriptional repressor [Transcription]

Probab=95.14  E-value=0.01  Score=50.87  Aligned_cols=48  Identities=27%  Similarity=0.789  Sum_probs=36.4

Q ss_pred             ccccccccccccc--eEE--ccCCCccccHhhHHHhhcCCCcccccccccccc
Q 028047          159 GQLCVVCLTRRRI--SAF--NPCGHLVCCRRCAISVEREASPKCPVCRMTVRS  207 (214)
Q Consensus       159 ~~~C~IC~~~~~~--~~~--lpCgH~~~C~~C~~~~~~~~~~~CP~CR~~i~~  207 (214)
                      +..|+.|++..-.  --|  -|||... |..|...+....+.+||-||+..+.
T Consensus        14 ed~cplcie~mditdknf~pc~cgy~i-c~fc~~~irq~lngrcpacrr~y~d   65 (480)
T COG5175          14 EDYCPLCIEPMDITDKNFFPCPCGYQI-CQFCYNNIRQNLNGRCPACRRKYDD   65 (480)
T ss_pred             cccCcccccccccccCCcccCCcccHH-HHHHHHHHHhhccCCChHhhhhccc
Confidence            3459999986532  223  4678888 8999998887677899999987654

>PF04641 Rtf2: Rtf2 RING-finger

Probab=95.13  E-value=0.019  Score=48.10  Aligned_cols=48  Identities=23%  Similarity=0.509  Sum_probs=38.1

Q ss_pred             ccccccccccccc----cceEEccCCCccccHhhHHHhhcCCCcccccccccccc
Q 028047          157 PDGQLCVVCLTRR----RISAFNPCGHLVCCRRCAISVEREASPKCPVCRMTVRS  207 (214)
Q Consensus       157 ~~~~~C~IC~~~~----~~~~~lpCgH~~~C~~C~~~~~~~~~~~CP~CR~~i~~  207 (214)
                      .....|+|....+    +-+.+.||||+| +..++..+.  ....||+|-.++..
T Consensus       111 ~~~~~CPvt~~~~~~~~~fv~l~~cG~V~-s~~alke~k--~~~~Cp~c~~~f~~  162 (260)
T PF04641_consen  111 EGRFICPVTGKEFNGKHKFVYLRPCGCVF-SEKALKELK--KSKKCPVCGKPFTE  162 (260)
T ss_pred             CceeECCCCCcccCCceeEEEEcCCCCEe-eHHHHHhhc--ccccccccCCcccc
Confidence            4456999998765    346678999999 799999985  23579999999875

>COG5219 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]

Probab=95.02  E-value=0.0081  Score=57.68  Aligned_cols=48  Identities=21%  Similarity=0.522  Sum_probs=34.6

Q ss_pred             ccccccccccccc-------ceEEccCCCccccHhhHHHhhc-CCCccccccccccc
Q 028047          158 DGQLCVVCLTRRR-------ISAFNPCGHLVCCRRCAISVER-EASPKCPVCRMTVR  206 (214)
Q Consensus       158 ~~~~C~IC~~~~~-------~~~~lpCgH~~~C~~C~~~~~~-~~~~~CP~CR~~i~  206 (214)
                      .-.+|+||+.-..       +-.--.|.|.|| ..|+-+|.+ .++.+||.||..|+
T Consensus      1468 G~eECaICYsvL~~vdr~lPskrC~TCknKFH-~~CLyKWf~Ss~~s~CPlCRseit 1523 (1525)
T COG5219        1468 GHEECAICYSVLDMVDRSLPSKRCATCKNKFH-TRCLYKWFASSARSNCPLCRSEIT 1523 (1525)
T ss_pred             CcchhhHHHHHHHHHhccCCccccchhhhhhh-HHHHHHHHHhcCCCCCCccccccc
Confidence            3457999996422       112235899997 899999976 44568999998875

>KOG1428 consensus Inhibitor of type V adenylyl cyclases/Neuronal presynaptic protein Highwire/PAM/RPM-1 [Signal transduction mechanisms]

Probab=94.53  E-value=0.017  Score=57.91  Aligned_cols=51  Identities=20%  Similarity=0.549  Sum_probs=37.9

Q ss_pred             cccccccccccccc---ceEEccCCCccccHhhHHHhhcCC---------Ccccccccccccce
Q 028047          157 PDGQLCVVCLTRRR---ISAFNPCGHLVCCRRCAISVEREA---------SPKCPVCRMTVRSS  208 (214)
Q Consensus       157 ~~~~~C~IC~~~~~---~~~~lpCgH~~~C~~C~~~~~~~~---------~~~CP~CR~~i~~~  208 (214)
                      +.+..|+||+.+.-   .++-+.|+|.|+ ..|..++....         -..||+|.++|..+
T Consensus      3484 D~DDmCmICFTE~L~AAP~IqL~C~HiFH-lqC~R~vLE~RW~GPRItF~FisCPiC~n~InH~ 3546 (3738)
T KOG1428|consen 3484 DADDMCMICFTEALSAAPAIQLDCSHIFH-LQCCRRVLENRWLGPRITFGFISCPICKNKINHI 3546 (3738)
T ss_pred             ccCceEEEEehhhhCCCcceecCCccchh-HHHHHHHHHhcccCCeeEEeeeecccccchhhhH
Confidence            34569999998754   467899999996 78877665311         13599999999764

>KOG3039 consensus Uncharacterized conserved protein [Function unknown]

Probab=94.47  E-value=0.032  Score=45.89  Aligned_cols=47  Identities=21%  Similarity=0.400  Sum_probs=37.5

Q ss_pred             ccccccccccccc----eEEccCCCccccHhhHHHhhcCCCcccccccccccc
Q 028047          159 GQLCVVCLTRRRI----SAFNPCGHLVCCRRCAISVEREASPKCPVCRMTVRS  207 (214)
Q Consensus       159 ~~~C~IC~~~~~~----~~~lpCgH~~~C~~C~~~~~~~~~~~CP~CR~~i~~  207 (214)
                      ...|+||.+...+    +++-||||++ |.+|..++.+ ....||+|-.+...
T Consensus       221 ryiCpvtrd~LtNt~~ca~Lr~sg~Vv-~~ecvEklir-~D~v~pv~d~plkd  271 (303)
T KOG3039|consen  221 RYICPVTRDTLTNTTPCAVLRPSGHVV-TKECVEKLIR-KDMVDPVTDKPLKD  271 (303)
T ss_pred             ceecccchhhhcCccceEEeccCCcEe-eHHHHHHhcc-ccccccCCCCcCcc
Confidence            3589999987655    4567999999 8999999974 35679999877654

>KOG2932 consensus E3 ubiquitin ligase involved in ubiquitination of E-cadherin complex [Posttranslational modification, protein turnover, chaperones]

Probab=94.22  E-value=0.013  Score=49.63  Aligned_cols=45  Identities=31%  Similarity=0.667  Sum_probs=32.0

Q ss_pred             cccccccccccc-eEEccCCCccccHhhHHHhhcCCCcccccccccccce
Q 028047          160 QLCVVCLTRRRI-SAFNPCGHLVCCRRCAISVEREASPKCPVCRMTVRSS  208 (214)
Q Consensus       160 ~~C~IC~~~~~~-~~~lpCgH~~~C~~C~~~~~~~~~~~CP~CR~~i~~~  208 (214)
                      .-|.-|--.... -.++||.|+| |.+|+..-.   .+.||.|--+|.++
T Consensus        91 HfCd~Cd~PI~IYGRmIPCkHvF-Cl~CAr~~~---dK~Cp~C~d~VqrI  136 (389)
T KOG2932|consen   91 HFCDRCDFPIAIYGRMIPCKHVF-CLECARSDS---DKICPLCDDRVQRI  136 (389)
T ss_pred             EeecccCCcceeeecccccchhh-hhhhhhcCc---cccCcCcccHHHHH
Confidence            356666543322 3468999999 999998765   45899998777654

>KOG1493 consensus Anaphase-promoting complex (APC), subunit 11 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=94.19  E-value=0.013  Score=39.29  Aligned_cols=30  Identities=27%  Similarity=0.606  Sum_probs=23.6

Q ss_pred             cCCCccccHhhHHHhhcC--CCccccccccccc
Q 028047          176 PCGHLVCCRRCAISVERE--ASPKCPVCRMTVR  206 (214)
Q Consensus       176 pCgH~~~C~~C~~~~~~~--~~~~CP~CR~~i~  206 (214)
                      -|.|.|+ ..|+.+|...  +...||+||+...
T Consensus        50 ~C~h~fh-~hCI~~wl~~~tsq~~CPmcRq~~~   81 (84)
T KOG1493|consen   50 YCLHAFH-AHCILKWLNTPTSQGQCPMCRQTWQ   81 (84)
T ss_pred             HHHHHHH-HHHHHHHhcCccccccCCcchheeE
Confidence            5999997 8999999752  2346999998754

>PF10272 Tmpp129: Putative transmembrane protein precursor; InterPro: IPR018801 This entry consists of proteins conserved from worms to humans

Probab=93.93  E-value=0.058  Score=47.12  Aligned_cols=24  Identities=25%  Similarity=0.538  Sum_probs=18.3

Q ss_pred             cHhhHHHhhc------------CCCccccccccccc
Q 028047          183 CRRCAISVER------------EASPKCPVCRMTVR  206 (214)
Q Consensus       183 C~~C~~~~~~------------~~~~~CP~CR~~i~  206 (214)
                      |.+|+-+|..            ..+..||.||+++-
T Consensus       316 C~~Cm~kwFasrQd~~~~~~Wl~~~~~CPtCRa~FC  351 (358)
T PF10272_consen  316 CLECMGKWFASRQDQQHPETWLSGKCPCPTCRAKFC  351 (358)
T ss_pred             HHHHHHHHhhhcCCCCChhhhhcCCCCCCCCcccce
Confidence            8899998863            23457999999864

They are purported to be transmembrane protein-precursors but their function is unknown.

>PF10367 Vps39_2: Vacuolar sorting protein 39 domain 2; InterPro: IPR019453 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1

Probab=93.74  E-value=0.036  Score=39.51  Aligned_cols=32  Identities=34%  Similarity=0.634  Sum_probs=24.2

Q ss_pred             Cccccccccccccccce--EEccCCCccccHhhHH
Q 028047          156 IPDGQLCVVCLTRRRIS--AFNPCGHLVCCRRCAI  188 (214)
Q Consensus       156 ~~~~~~C~IC~~~~~~~--~~lpCgH~~~C~~C~~  188 (214)
                      +.++..|.+|.....+.  +..||||.+| ..|+.
T Consensus        75 i~~~~~C~vC~k~l~~~~f~~~p~~~v~H-~~C~~  108 (109)
T PF10367_consen   75 ITESTKCSVCGKPLGNSVFVVFPCGHVVH-YSCIK  108 (109)
T ss_pred             ECCCCCccCcCCcCCCceEEEeCCCeEEe-ccccc
Confidence            34567899999876653  4579999995 78864

Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised In Vps39 this domain is involved in localisation and in mediating the interactions with Vps11 [].

>KOG4445 consensus Uncharacterized conserved protein, contains RWD domain [Function unknown]

Probab=93.68  E-value=0.018  Score=48.65  Aligned_cols=47  Identities=26%  Similarity=0.611  Sum_probs=33.2

Q ss_pred             ccccccccccccc---eEEccCCCccccHhhHHHhhc----------------------CCCccccccccccc
Q 028047          159 GQLCVVCLTRRRI---SAFNPCGHLVCCRRCAISVER----------------------EASPKCPVCRMTVR  206 (214)
Q Consensus       159 ~~~C~IC~~~~~~---~~~lpCgH~~~C~~C~~~~~~----------------------~~~~~CP~CR~~i~  206 (214)
                      ...|+||+--+.+   ....+|-|.++| .|+.++..                      +....||+||-.|.
T Consensus       115 ~gqCvICLygfa~~~~ft~T~C~Hy~H~-~ClaRyl~~~~~~lrqe~q~~~~~~qh~~~~~eavcpVcre~i~  186 (368)
T KOG4445|consen  115 NGQCVICLYGFASSPAFTVTACDHYMHF-ACLARYLTECLTGLRQEIQDAQKERQHMKEQVEAVCPVCRERIK  186 (368)
T ss_pred             CCceEEEEEeecCCCceeeehhHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHhhhhhHhhhhcc
Confidence            3479999977654   456799999985 88876432                      11235999998875

>COG5194 APC11 Component of SCF ubiquitin ligase and anaphase-promoting complex [Posttranslational modification, protein turnover, chaperones / Cell division and chromosome partitioning]

Probab=93.04  E-value=0.078  Score=35.95  Aligned_cols=31  Identities=23%  Similarity=0.411  Sum_probs=25.2

Q ss_pred             EccCCCccccHhhHHHhhcCCCccccccccccc
Q 028047          174 FNPCGHLVCCRRCAISVEREASPKCPVCRMTVR  206 (214)
Q Consensus       174 ~lpCgH~~~C~~C~~~~~~~~~~~CP~CR~~i~  206 (214)
                      ---|.|.|+ ..|+.+|... ...||++|+...
T Consensus        51 wG~CnHaFH-~HCI~rWL~T-k~~CPld~q~w~   81 (88)
T COG5194          51 WGVCNHAFH-DHCIYRWLDT-KGVCPLDRQTWV   81 (88)
T ss_pred             EEecchHHH-HHHHHHHHhh-CCCCCCCCceeE
Confidence            346999997 9999999853 557999998764

>PF03854 zf-P11: P-11 zinc finger; InterPro: IPR003224 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=91.90  E-value=0.15  Score=31.11  Aligned_cols=46  Identities=20%  Similarity=0.518  Sum_probs=24.7

Q ss_pred             ccccccccccceEEccCCCccccHhhHHHhhcCCCcccccccccccceE
Q 028047          161 LCVVCLTRRRISAFNPCGHLVCCRRCAISVEREASPKCPVCRMTVRSSM  209 (214)
Q Consensus       161 ~C~IC~~~~~~~~~lpCgH~~~C~~C~~~~~~~~~~~CP~CR~~i~~~~  209 (214)
                      .|.-|.-..+.-  +.|..-+.|..|...+... +..||+|..+....+
T Consensus         4 nCKsCWf~~k~L--i~C~dHYLCl~CLt~ml~~-s~~C~iC~~~LPtki   49 (50)
T PF03854_consen    4 NCKSCWFANKGL--IKCSDHYLCLNCLTLMLSR-SDRCPICGKPLPTKI   49 (50)
T ss_dssp             ---SS-S--SSE--EE-SS-EEEHHHHHHT-SS-SSEETTTTEE----S
T ss_pred             cChhhhhcCCCe--eeecchhHHHHHHHHHhcc-ccCCCcccCcCcccc
Confidence            477777666554  4587555599999998854 558999998876554

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The RING-finger is a specialised type of Zn-finger of 40 to 60 residues that binds two atoms of zinc, and is probably involved in mediating protein-protein interactions [, , ]. There are two different variants, the C3HC4-type and a C3H2C3-type, which is clearly related despite the different cysteine/histidine pattern. The latter type is sometimes referred to as 'RING-H2 finger'. The RING domain is a protein interaction domain which has been implicated in a range of diverse biological processes. Several 3D-structures for RING-fingers are known [, ]. The 3D structure of the zinc ligation system is unique to the RING domain and is referred to as the 'cross-brace' motif. The spacing of the cysteines in such a domain is: C-x(2)-C-x(9 to 39)-C-x(1 to 3)-H-x(2 to 3)-C-x(2)-C-x(4 to 48)-C-x(2)-C Metal ligand pairs one and three co-ordinate to bind one zinc ion, whilst pairs two and four bind the second. This entry represents RING finger protein Z, a small polypeptide found in some negative-strand RNA viruses including Lassa fever virus, which plays a crucial role in virion assembly and budding. RING finger Z has been shown to interact with several host proteins, including promyelocytic leukemia protein and the eukaryotic translation initiation factor 4E [, ]. It is sufficient in the absence of any other viral proteins to release virus-like particles from the infected cell []. This protein is also responsible for arenavirus superinfection exclusion; expression of this protein in a host cell strongly and specifically inhibits areanavirus transcription and replication []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0003723 RNA binding, 0008270 zinc ion binding; PDB: 2KO5_A.

>KOG2113 consensus Predicted RNA binding protein, contains KH domain [General function prediction only]

Probab=91.85  E-value=0.15  Score=43.38  Aligned_cols=53  Identities=9%  Similarity=-0.008  Sum_probs=44.4

Q ss_pred             CccccccccccccccceEEccCCCccccHhhHHHhhcCCCcccccccccccceEEe
Q 028047          156 IPDGQLCVVCLTRRRISAFNPCGHLVCCRRCAISVEREASPKCPVCRMTVRSSMRI  211 (214)
Q Consensus       156 ~~~~~~C~IC~~~~~~~~~lpCgH~~~C~~C~~~~~~~~~~~CP~CR~~i~~~~~i  211 (214)
                      +-....|.+|-...-..+..||||+..|.+|+..-.   +..||+|.......++|
T Consensus       340 ~~s~~~~~~~~~~~~st~~~~~~~n~~~~~~a~~s~---~~~~~~c~~~~~~~~~i  392 (394)
T KOG2113|consen  340 LMSSLKGTSAGFGLLSTIWSGGNMNLSPGSLASASA---SPTSSTCDHNDHTLVPI  392 (394)
T ss_pred             chhhcccccccCceeeeEeecCCcccChhhhhhccc---CCccccccccceeeeec
Confidence            345679999999999999999999999999998433   46899998888777776

>COG5220 TFB3 Cdk activating kinase (CAK)/RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, subunit TFB3 [Cell division and chromosome partitioning / Transcription / DNA replication, recombination, and repair]

Probab=91.44  E-value=0.079  Score=43.45  Aligned_cols=45  Identities=29%  Similarity=0.705  Sum_probs=33.7

Q ss_pred             cccccccccccc---cceEE--cc-CCCccccHhhHHHhhcCCCcccc--cccc
Q 028047          158 DGQLCVVCLTRR---RISAF--NP-CGHLVCCRRCAISVEREASPKCP--VCRM  203 (214)
Q Consensus       158 ~~~~C~IC~~~~---~~~~~--lp-CgH~~~C~~C~~~~~~~~~~~CP--~CR~  203 (214)
                      .+..|+||....   -++.+  -| |-|.. |.+|..++.......||  -|..
T Consensus         9 ~d~~CPvCksDrYLnPdik~linPECyHrm-CESCvdRIFs~GpAqCP~~gC~k   61 (314)
T COG5220           9 EDRRCPVCKSDRYLNPDIKILINPECYHRM-CESCVDRIFSRGPAQCPYKGCGK   61 (314)
T ss_pred             hcccCCccccccccCCCeEEEECHHHHHHH-HHHHHHHHhcCCCCCCCCccHHH
Confidence            355899998642   23333  35 99999 99999999987777899  7854

>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]

Probab=91.40  E-value=0.059  Score=47.15  Aligned_cols=49  Identities=24%  Similarity=0.512  Sum_probs=36.0

Q ss_pred             cccccccccc----ccceEEccCCCccccHhhHHHhhcC-CCcccccccccccce
Q 028047          159 GQLCVVCLTR----RRISAFNPCGHLVCCRRCAISVERE-ASPKCPVCRMTVRSS  208 (214)
Q Consensus       159 ~~~C~IC~~~----~~~~~~lpCgH~~~C~~C~~~~~~~-~~~~CP~CR~~i~~~  208 (214)
                      +..|-.|-+.    +.+.--+||.|.|+ ..|+..+..+ ....||.||.-++++
T Consensus       365 ~L~Cg~CGe~~Glk~e~LqALpCsHIfH-~rCl~e~L~~n~~rsCP~CrklrSs~  418 (518)
T KOG1941|consen  365 ELYCGLCGESIGLKNERLQALPCSHIFH-LRCLQEILENNGTRSCPNCRKLRSSM  418 (518)
T ss_pred             hhhhhhhhhhhcCCcccccccchhHHHH-HHHHHHHHHhCCCCCCccHHHHHhhc
Confidence            4578889864    34455689999997 8999987653 345699999665543

>KOG1571 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=90.90  E-value=0.022  Score=49.16  Aligned_cols=119  Identities=18%  Similarity=-0.003  Sum_probs=79.2

Q ss_pred             CCCCCCCCCceeeeeceeeCCCchhhhhhhhhcCceeceeeeeeeeecCCCeeeeEeeeeecCCceeecCCCCCCeeeec
Q 028047            1 MDGSRQPLPLTTAYQRLELANVSPFTFLQAMFGLKCPIGVLAEEKILPLGKDISAVGICSFKNGIPEIKSCKDLPYFLSE   80 (214)
Q Consensus         1 ~~~~~~~l~~~~v~~~f~p~~~~~~~~~~~~~sg~~~~G~~~~E~~L~~g~~it~vGl~~~~~g~~~l~~~~~~p~~ls~   80 (214)
                      |++....||+.+++....+.+...++-+   .--.++.|.+..++.. .++-|+.+|..+...+-..+.-..-++|+|+.
T Consensus       176 ~~~~~~~l~~~~~~t~l~e~v~d~~~~~---r~~~~~~g~~~v~~s~-~d~LIsr~g~~s~~~kv~~~~~~~~~~ills~  251 (355)
T KOG1571|consen  176 FRETERVLPLGTRLTALGELVRDGYCGV---RVQPPMQGPLYVTKSA-ADRLISREGDLSFFVKVNGMVFGTLGVILLSF  251 (355)
T ss_pred             ccceEEeeccccceeeeehheecCCCce---EecCCccCcceeeccc-hhhHHHhhccceeeeeecceeeeeeeEEeehH
Confidence            4667788888888888888876443322   1223468999999988 99999999933555544444444667899999


Q ss_pred             cCHHHHHHHhhhhhhhhhhhhhhhchhHHHHHHHHHHHHHHHH
Q 028047           81 KTKDLMVVDLVNRSKILFWSGIVLGSLSIGILGYAIVRNWNRW  123 (214)
Q Consensus        81 ~~~d~Li~~l~~~~~~~~~~~i~~~~~~~~~~~~~~~r~~~~~  123 (214)
                      ..+|.++++..+..+.++-....++....-.+.....+.|..|
T Consensus       252 ~~~d~~led~r~~r~~l~k~~~~~~~~rae~~s~g~~gtr~~~  294 (355)
T KOG1571|consen  252 IVKDNYLEDDRRQRRELVKRVEDLATVRAELLSRGVRGTRIQN  294 (355)
T ss_pred             HHHHHHHHHHHHHHHHHHHhhhhhhhheeeeeccccccccccc
Confidence            9999999987777665554443333333333444555555554

>KOG4185 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=90.51  E-value=0.15  Score=43.32  Aligned_cols=34  Identities=35%  Similarity=0.811  Sum_probs=28.1

Q ss_pred             ceEEccCCCccccHhhHHHhhcCCCcccccccccc
Q 028047          171 ISAFNPCGHLVCCRRCAISVEREASPKCPVCRMTV  205 (214)
Q Consensus       171 ~~~~lpCgH~~~C~~C~~~~~~~~~~~CP~CR~~i  205 (214)
                      .+..+.|||.+ |..|+..+.......||.||.+.
T Consensus        21 ~p~~l~c~h~~-c~~c~~~l~~~~~i~cpfcR~~~   54 (296)
T KOG4185|consen   21 IPRVLKCGHTI-CQNCASKLLGNSRILCPFCRETT   54 (296)
T ss_pred             CCcccccCcee-hHhHHHHHhcCceeeccCCCCcc
Confidence            45566699999 89999999876666799999884

>PHA02862 5L protein; Provisional

Probab=89.95  E-value=0.26  Score=37.33  Aligned_cols=51  Identities=20%  Similarity=0.436  Sum_probs=35.2

Q ss_pred             ccccccccccccceEEccCCC-----ccccHhhHHHhhcC-CCcccccccccccceEEee
Q 028047          159 GQLCVVCLTRRRISAFNPCGH-----LVCCRRCAISVERE-ASPKCPVCRMTVRSSMRIY  212 (214)
Q Consensus       159 ~~~C~IC~~~~~~~~~lpCgH-----~~~C~~C~~~~~~~-~~~~CP~CR~~i~~~~~i~  212 (214)
                      +..|-||++...+. .-||.-     ..| .+|..+|... .+..||+|+.+.. +.+.|
T Consensus         2 ~diCWIC~~~~~e~-~~PC~C~GS~K~VH-q~CL~~WIn~S~k~~CeLCkteY~-Ik~~y   58 (156)
T PHA02862          2 SDICWICNDVCDER-NNFCGCNEEYKVVH-IKCMQLWINYSKKKECNLCKTKYN-IKKTY   58 (156)
T ss_pred             CCEEEEecCcCCCC-cccccccCcchhHH-HHHHHHHHhcCCCcCccCCCCeEE-EEEcc
Confidence            35799999986554 468863     233 7999999753 3456999998864 44443

>KOG0827 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=89.40  E-value=0.17  Score=44.26  Aligned_cols=34  Identities=21%  Similarity=0.510  Sum_probs=24.3

Q ss_pred             ccceEEcc-CCCccccHhhHHHhhcCCC--cccccccc
Q 028047          169 RRISAFNP-CGHLVCCRRCAISVEREAS--PKCPVCRM  203 (214)
Q Consensus       169 ~~~~~~lp-CgH~~~C~~C~~~~~~~~~--~~CP~CR~  203 (214)
                      ..+..-+. |||.|+ ..|...|..-..  ..||+|+-
T Consensus        17 ~~~l~~i~~cGhifh-~~cl~qwfe~~Ps~R~cpic~i   53 (465)
T KOG0827|consen   17 DHELGPIGTCGHIFH-TTCLTQWFEGDPSNRGCPICQI   53 (465)
T ss_pred             ccccccccchhhHHH-HHHHHHHHccCCccCCCCceee
Confidence            33433334 999997 899999986322  47999983

>PHA02825 LAP/PHD finger-like protein; Provisional

Probab=89.27  E-value=0.33  Score=37.40  Aligned_cols=48  Identities=17%  Similarity=0.411  Sum_probs=34.4

Q ss_pred             ccccccccccccccceEEccCCC-----ccccHhhHHHhhcC-CCccccccccccc
Q 028047          157 PDGQLCVVCLTRRRISAFNPCGH-----LVCCRRCAISVERE-ASPKCPVCRMTVR  206 (214)
Q Consensus       157 ~~~~~C~IC~~~~~~~~~lpCgH-----~~~C~~C~~~~~~~-~~~~CP~CR~~i~  206 (214)
                      ..+..|-||++...+ ..-||.-     ..| .+|..+|... ....|++|+.++.
T Consensus         6 ~~~~~CRIC~~~~~~-~~~PC~CkGs~k~VH-~sCL~rWi~~s~~~~CeiC~~~Y~   59 (162)
T PHA02825          6 LMDKCCWICKDEYDV-VTNYCNCKNENKIVH-KECLEEWINTSKNKSCKICNGPYN   59 (162)
T ss_pred             CCCCeeEecCCCCCC-ccCCcccCCCchHHH-HHHHHHHHhcCCCCcccccCCeEE
Confidence            346689999988654 3458864     234 7899999753 3457999998864

>PF05883 Baculo_RING: Baculovirus U-box/Ring-like domain; InterPro: IPR008573 This family consists of several Baculovirus proteins of around 130 residues in length

Probab=89.24  E-value=0.17  Score=37.92  Aligned_cols=32  Identities=19%  Similarity=0.487  Sum_probs=26.1

Q ss_pred             ccccccccccccc---eEEccCC------CccccHhhHHHhh
Q 028047          159 GQLCVVCLTRRRI---SAFNPCG------HLVCCRRCAISVE  191 (214)
Q Consensus       159 ~~~C~IC~~~~~~---~~~lpCg------H~~~C~~C~~~~~  191 (214)
                      ..+|.||++...+   .+.++||      |+| |.+|..+|.
T Consensus        26 ~~EC~IC~~~I~~~~GvV~vt~~g~lnLEkmf-c~~C~~rw~   66 (134)
T PF05883_consen   26 TVECQICFDRIDNNDGVVYVTDGGTLNLEKMF-CADCDKRWR   66 (134)
T ss_pred             CeeehhhhhhhhcCCCEEEEecCCeehHHHHH-HHHHHHHHH
Confidence            4479999987655   7778898      677 899999995

The function of this family is unknown, but it appears to be related to the U-box and ring finger domain by profile-profile comparison.

>KOG3161 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=88.64  E-value=0.16  Score=47.17  Aligned_cols=40  Identities=28%  Similarity=0.597  Sum_probs=32.0

Q ss_pred             cccccccccccc----cceEEccCCCccccHhhHHHhhcCCCccccccc
Q 028047          158 DGQLCVVCLTRR----RISAFNPCGHLVCCRRCAISVEREASPKCPVCR  202 (214)
Q Consensus       158 ~~~~C~IC~~~~----~~~~~lpCgH~~~C~~C~~~~~~~~~~~CP~CR  202 (214)
                      +-..|.||+..+    ..++++-|||.. |..|++.+..   ..|| |.
T Consensus        10 ~~l~c~ic~n~f~~~~~~Pvsl~cghti-c~~c~~~lyn---~scp-~~   53 (861)
T KOG3161|consen   10 LLLLCDICLNLFVVQRLEPVSLQCGHTI-CGHCVQLLYN---ASCP-TK   53 (861)
T ss_pred             HHhhchHHHHHHHHHhcCcccccccchH-HHHHHHhHhh---ccCC-CC
Confidence            456899997654    568899999999 9999999884   3788 54

>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]

Probab=87.00  E-value=0.23  Score=47.47  Aligned_cols=46  Identities=26%  Similarity=0.518  Sum_probs=33.6

Q ss_pred             ccccccccccccc-eEEccCCCccccHhhHHHhhcCCCcccccccccccceE
Q 028047          159 GQLCVVCLTRRRI-SAFNPCGHLVCCRRCAISVEREASPKCPVCRMTVRSSM  209 (214)
Q Consensus       159 ~~~C~IC~~~~~~-~~~lpCgH~~~C~~C~~~~~~~~~~~CP~CR~~i~~~~  209 (214)
                      ...|..|.....- .|..-|||.+| ..|...    ....||.|+....+..
T Consensus       840 ~skCs~C~~~LdlP~VhF~CgHsyH-qhC~e~----~~~~CP~C~~e~~~~m  886 (933)
T KOG2114|consen  840 VSKCSACEGTLDLPFVHFLCGHSYH-QHCLED----KEDKCPKCLPELRGVM  886 (933)
T ss_pred             eeeecccCCccccceeeeecccHHH-HHhhcc----CcccCCccchhhhhhH
Confidence            3589999876554 46678999997 899882    2347999998555443

>PF04710 Pellino: Pellino; InterPro: IPR006800 Pellino is involved in Toll-like signalling pathways, and associates with the kinase domain of the Pelle Ser/Thr kinase [, , ]

Probab=86.83  E-value=0.2  Score=44.08  Aligned_cols=48  Identities=27%  Similarity=0.640  Sum_probs=0.0

Q ss_pred             cccccccccc-------------------ccceEEccCCCccccHhhHHHhhc---C-----CCcccccccccccc
Q 028047          159 GQLCVVCLTR-------------------RRISAFNPCGHLVCCRRCAISVER---E-----ASPKCPVCRMTVRS  207 (214)
Q Consensus       159 ~~~C~IC~~~-------------------~~~~~~lpCgH~~~C~~C~~~~~~---~-----~~~~CP~CR~~i~~  207 (214)
                      ...|++|+..                   +-..+|-||||++. ...+.-|..   .     -...||.|-.++..
T Consensus       328 ~r~CPlCr~~g~~V~L~mG~E~afyvD~~~pthaF~PCGHv~S-ekTa~yWs~i~lPhGt~~f~a~CPFCa~~L~g  402 (416)
T PF04710_consen  328 SRTCPLCRQVGPYVPLWMGCEPAFYVDSGPPTHAFNPCGHVCS-EKTAKYWSQIPLPHGTHAFHAACPFCATPLDG  402 (416)
T ss_dssp             ----------------------------------------------------------------------------
T ss_pred             cccCCCccccCCceeEeeccccceeecCCCCceeecccccccc-hhhhhhhhcCCCCCCcccccccCCcccCcccC
Confidence            6689999952                   23457899999972 444444432   1     12469999998875

; PDB: 3EGB_B 3EGA_A.

>PHA03096 p28-like protein; Provisional

Probab=86.37  E-value=0.38  Score=40.89  Aligned_cols=32  Identities=16%  Similarity=0.299  Sum_probs=25.3

Q ss_pred             ccccccccccc--------ceEEccCCCccccHhhHHHhhc
Q 028047          160 QLCVVCLTRRR--------ISAFNPCGHLVCCRRCAISVER  192 (214)
Q Consensus       160 ~~C~IC~~~~~--------~~~~lpCgH~~~C~~C~~~~~~  192 (214)
                      ..|-||++...        ..++-.|.|.| |..|+..|..
T Consensus       179 k~c~ic~e~~~~k~~~~~~fgil~~c~h~f-c~~ci~~wr~  218 (284)
T PHA03096        179 KICGICLENIKAKYIIKKYYGILSEIKHEF-NIFCIKIWMT  218 (284)
T ss_pred             hhcccchhhhhhhccccccccccccCCcHH-HHHHHHHHHH
Confidence            67999998643        24456799999 9999998864

>KOG2817 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=86.17  E-value=0.51  Score=41.47  Aligned_cols=46  Identities=22%  Similarity=0.469  Sum_probs=34.7

Q ss_pred             cccccccccccc---ceEEccCCCccccHhhHHHhhcCCC--cccccccccc
Q 028047          159 GQLCVVCLTRRR---ISAFNPCGHLVCCRRCAISVEREAS--PKCPVCRMTV  205 (214)
Q Consensus       159 ~~~C~IC~~~~~---~~~~lpCgH~~~C~~C~~~~~~~~~--~~CP~CR~~i  205 (214)
                      --.|+|=.+.-.   .|..+.|||+. |.+=+.++.....  -+||.|-...
T Consensus       334 vF~CPVlKeqtsdeNPPm~L~CGHVI-SkdAlnrLS~ng~~sfKCPYCP~e~  384 (394)
T KOG2817|consen  334 VFICPVLKEQTSDENPPMMLICGHVI-SKDALNRLSKNGSQSFKCPYCPVEQ  384 (394)
T ss_pred             eeecccchhhccCCCCCeeeecccee-cHHHHHHHhhCCCeeeeCCCCCccc
Confidence            458999776543   47889999999 8998888876554  5699996443

>KOG4362 consensus Transcriptional regulator BRCA1 [Replication, recombination and repair; Transcription]

Probab=84.93  E-value=0.27  Score=46.28  Aligned_cols=48  Identities=17%  Similarity=0.523  Sum_probs=39.2

Q ss_pred             ccccccccccccceEEccCCCccccHhhHHHhhc--CCCcccccccccccc
Q 028047          159 GQLCVVCLTRRRISAFNPCGHLVCCRRCAISVER--EASPKCPVCRMTVRS  207 (214)
Q Consensus       159 ~~~C~IC~~~~~~~~~lpCgH~~~C~~C~~~~~~--~~~~~CP~CR~~i~~  207 (214)
                      ...|.||.....+++.+.|.|.| |..|......  .....||+|+..+.+
T Consensus        21 ~lEc~ic~~~~~~p~~~kc~~~~-l~~~~n~~f~~~~~~~~~~lc~~~~eK   70 (684)
T KOG4362|consen   21 ILECPICLEHVKEPSLLKCDHIF-LKFCLNKLFESKKGPKQCALCKSDIEK   70 (684)
T ss_pred             hccCCceeEEeeccchhhhhHHH-HhhhhhceeeccCccccchhhhhhhhh
Confidence            34799999999999999999999 8999876543  334679999977654

>KOG3842 consensus Adaptor protein Pellino [Signal transduction mechanisms]

Probab=83.06  E-value=0.87  Score=39.00  Aligned_cols=48  Identities=25%  Similarity=0.609  Sum_probs=31.6

Q ss_pred             ccccccccccc-------------------ccceEEccCCCccccHhhHHHhhcCC---------Ccccccccccccc
Q 028047          158 DGQLCVVCLTR-------------------RRISAFNPCGHLVCCRRCAISVEREA---------SPKCPVCRMTVRS  207 (214)
Q Consensus       158 ~~~~C~IC~~~-------------------~~~~~~lpCgH~~~C~~C~~~~~~~~---------~~~CP~CR~~i~~  207 (214)
                      .+..|++|+..                   +-+-.|-||||++  .+=...+|.+.         ...||.|-+....
T Consensus       340 ~~r~CPmC~~~gp~V~L~lG~E~~f~vD~G~pthaF~PCGHv~--sekt~~YWs~iplPhGT~~f~a~CPFC~~~L~g  415 (429)
T KOG3842|consen  340 RERECPMCRVVGPYVPLWLGCEAGFYVDAGPPTHAFNPCGHVC--SEKTVKYWSQIPLPHGTHAFHAACPFCATQLAG  415 (429)
T ss_pred             ccCcCCeeeeecceeeeeccccceeEecCCCcccccCCccccc--chhhhhHhhcCcCCCccccccccCcchhhhhcc
Confidence            35689999863                   2234678999995  45445555421         2359999877654

>KOG2930 consensus SCF ubiquitin ligase, Rbx1 component [Posttranslational modification, protein turnover, chaperones]

Probab=82.42  E-value=0.64  Score=33.17  Aligned_cols=28  Identities=18%  Similarity=0.371  Sum_probs=22.6

Q ss_pred             ccCCCccccHhhHHHhhcCCCccccccccc
Q 028047          175 NPCGHLVCCRRCAISVEREASPKCPVCRMT  204 (214)
Q Consensus       175 lpCgH~~~C~~C~~~~~~~~~~~CP~CR~~  204 (214)
                      -.|.|.|+ .-|+.+|.+. ...||+|.+.
T Consensus        79 G~CNHaFH-~hCisrWlkt-r~vCPLdn~e  106 (114)
T KOG2930|consen   79 GVCNHAFH-FHCISRWLKT-RNVCPLDNKE  106 (114)
T ss_pred             eecchHHH-HHHHHHHHhh-cCcCCCcCcc
Confidence            46999997 8999999853 4579999765

>KOG3579 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=82.23  E-value=0.58  Score=39.40  Aligned_cols=33  Identities=24%  Similarity=0.558  Sum_probs=28.5

Q ss_pred             ccccccccccccceEEccC----CCccccHhhHHHhhc
Q 028047          159 GQLCVVCLTRRRISAFNPC----GHLVCCRRCAISVER  192 (214)
Q Consensus       159 ~~~C~IC~~~~~~~~~lpC----gH~~~C~~C~~~~~~  192 (214)
                      ...|.+|.++..|.-|+.|    .|.| |+.|...-.+
T Consensus       268 pLcCTLC~ERLEDTHFVQCPSVp~HKF-CFPCSResIK  304 (352)
T KOG3579|consen  268 PLCCTLCHERLEDTHFVQCPSVPSHKF-CFPCSRESIK  304 (352)
T ss_pred             ceeehhhhhhhccCceeecCCCcccce-ecccCHHHHH
Confidence            3689999999999999999    5999 9999976543

>PF12906 RINGv: RING-variant domain; PDB: 2D8S_A 1VYX_A

Probab=82.22  E-value=0.76  Score=27.98  Aligned_cols=39  Identities=31%  Similarity=0.734  Sum_probs=23.0

Q ss_pred             cccccccccc--eEEccCCC-----ccccHhhHHHhhc-CCCcccccc
Q 028047          162 CVVCLTRRRI--SAFNPCGH-----LVCCRRCAISVER-EASPKCPVC  201 (214)
Q Consensus       162 C~IC~~~~~~--~~~lpCgH-----~~~C~~C~~~~~~-~~~~~CP~C  201 (214)
                      |-||++...+  +...||+-     .+| ..|+.+|.. ..+..|++|
T Consensus         1 CrIC~~~~~~~~~li~pC~C~Gs~~~vH-~~CL~~W~~~~~~~~C~~C   47 (47)
T PF12906_consen    1 CRICLEGEEEDEPLISPCRCKGSMKYVH-RSCLERWIRESGNRKCEIC   47 (47)
T ss_dssp             ETTTTEE-SSSS-EE-SSS-SSCCGSEE-CCHHHHHHHHHT-SB-TTT
T ss_pred             CeEeCCcCCCCCceecccccCCCcchhH-HHHHHHHHHhcCCCcCCCC
Confidence            6788876443  57789862     333 689999975 334569887

>PF08114 PMP1_2: ATPase proteolipid family; InterPro: IPR012589 This family consists of small proteolipids associated with the plasma membrane H+ ATPase

Probab=81.68  E-value=2.4  Score=24.96  Aligned_cols=24  Identities=33%  Similarity=0.664  Sum_probs=17.0

Q ss_pred             hhhchhHHHHHHHHHHHHHHHHHH
Q 028047          102 IVLGSLSIGILGYAIVRNWNRWKD  125 (214)
Q Consensus       102 i~~~~~~~~~~~~~~~r~~~~~~~  125 (214)
                      ++.+.+++++++..++|.|..+|+
T Consensus        15 ~lVglv~i~iva~~iYRKw~aRkr   38 (43)
T PF08114_consen   15 CLVGLVGIGIVALFIYRKWQARKR   38 (43)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHH
Confidence            345666777777888888876554

Two proteolipids (PMP1 and PMP2) are associated with the ATPase and both genes are similarly expressed in the wild-type strain of yeast. No modification of the level of transcription of one PMP gene is detected in a strain deleted of the other. Though both proteolipids show similarity with other small proteolipids associated with other cation -transporting ATPases, their functions remain unclear [].

>KOG1940 consensus Zn-finger protein [General function prediction only]

Probab=81.46  E-value=0.39  Score=40.52  Aligned_cols=44  Identities=25%  Similarity=0.546  Sum_probs=34.5

Q ss_pred             cccccccc----ccceEEccCCCccccHhhHHHhhcCCCcccccccccccc
Q 028047          161 LCVVCLTR----RRISAFNPCGHLVCCRRCAISVEREASPKCPVCRMTVRS  207 (214)
Q Consensus       161 ~C~IC~~~----~~~~~~lpCgH~~~C~~C~~~~~~~~~~~CP~CR~~i~~  207 (214)
                      .|+||.+.    ...+..++|||.-+ ..|........ -.||+|.. +..
T Consensus       160 ncPic~e~l~~s~~~~~~~~CgH~~h-~~cf~e~~~~~-y~CP~C~~-~~d  207 (276)
T KOG1940|consen  160 NCPICKEYLFLSFEDAGVLKCGHYMH-SRCFEEMICEG-YTCPICSK-PGD  207 (276)
T ss_pred             CCchhHHHhccccccCCccCcccchH-HHHHHHHhccC-CCCCcccc-hHH
Confidence            49999875    45677899999987 89998876554 68999988 443

>KOG3970 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=81.32  E-value=0.96  Score=36.91  Aligned_cols=47  Identities=23%  Similarity=0.427  Sum_probs=35.3

Q ss_pred             cccccccccc--ccceEEccCCCccccHhhHHHhhc-------CCCccccccccccc
Q 028047          159 GQLCVVCLTR--RRISAFNPCGHLVCCRRCAISVER-------EASPKCPVCRMTVR  206 (214)
Q Consensus       159 ~~~C~IC~~~--~~~~~~lpCgH~~~C~~C~~~~~~-------~~~~~CP~CR~~i~  206 (214)
                      ...|..|-..  ..+++-+-|-|.|+ ..|...+..       ...-.||.|.+.|-
T Consensus        50 ~pNC~LC~t~La~gdt~RLvCyhlfH-W~ClneraA~lPanTAPaGyqCP~Cs~eiF  105 (299)
T KOG3970|consen   50 NPNCRLCNTPLASGDTTRLVCYHLFH-WKCLNERAANLPANTAPAGYQCPCCSQEIF  105 (299)
T ss_pred             CCCCceeCCccccCcceeehhhhhHH-HHHhhHHHhhCCCcCCCCcccCCCCCCccC
Confidence            3468888764  56788899999997 999988754       12346999988774

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	214
3t6p_A	345	Iap Antagonist-Induced Conformational Change In Cia		6e-07
3eb5_A	74	Structure Of The Ciap2 Ring Domain Length = 74		2e-06
4ic2_A	74	Crystal Structure Of The Xiap Ring Domain Length =		3e-06
2ecg_A	75	Solution Structure Of The Ring Domain Of The Baculo		3e-06
4ic3_A	74	Crystal Structure Of The F495l Mutant Xiap Ring Dom		9e-06
2yhn_A	79	The Idol-Ube2d Complex Mediates Sterol-Dependent De		2e-05
4auq_B	62	Structure Of Birc7-Ubch5b-Ub Complex. Length = 62		4e-04

>pdb|3T6P|A Chain A, Iap Antagonist-Induced Conformational Change In Ciap1 Promotes E3 Ligase Activation Via Dimerization Length = 345

Iteration: 1
 Score = 50.8 bits (120), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 31/102 (30%), Positives = 50/102 (49%), Gaps = 13/102 (12%)
Query: 121 NRWKDRQQRMSRQLTEAPSDDADSQIGSDEDVAGDIPDGQL--------CVVCLTRRRIS 172
           N +K+  + +   L +    D + +    EDV+G   + QL        C VC+ +    
Sbjct: 249 NIFKNSLKEIDSTLYKNLFVDKNMKYIPTEDVSGLSLEEQLRRLQEERTCKVCMDKEVSV 308
Query: 173 AFNPCGHLVCCRRCAISVEREASPKCPVCRMTVRSSMRIYFS 214
            F PCGHLV C+ CA S+      KCP+CR  ++ ++R + S
Sbjct: 309 VFIPCGHLVVCQECAPSLR-----KCPICRGIIKGTVRTFLS 345

>pdb|3EB5|A Chain A, Structure Of The Ciap2 Ring Domain Length = 74

Iteration: 1
 Score = 49.3 bits (116), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 28/77 (36%), Positives = 43/77 (55%), Gaps = 15/77 (19%)
Query: 147 GSDEDVAGDIP---------DGQLCVVCLTRRRISAFNPCGHLVCCRRCAISVEREASPK 197
           G+ EDV+ D+P         + + C VC+ +     F PCGHLV C+ CA S+      K
Sbjct: 4   GTTEDVS-DLPVEEQLRRLQEERTCKVCMDKEVSIVFIPCGHLVVCKDCAPSLR-----K 57
Query: 198 CPVCRMTVRSSMRIYFS 214
           CP+CR T++ ++R + S
Sbjct: 58  CPICRSTIKGTVRTFLS 74

>pdb|4IC2|A Chain A, Crystal Structure Of The Xiap Ring Domain Length = 74

Iteration: 1
 Score = 48.5 bits (114), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 24/67 (35%), Positives = 36/67 (53%), Gaps = 5/67 (7%)
Query: 148 SDEDVAGDIPDGQLCVVCLTRRRISAFNPCGHLVCCRRCAISVEREASPKCPVCRMTVRS 207
           S E+    + + +LC +C+ R     F PCGHLV C++CA     EA  KCP+C   +  
Sbjct: 13  STEEQLRRLQEEKLCKICMDRNIAIVFVPCGHLVTCKQCA-----EAVDKCPMCYTVITF 67
Query: 208 SMRIYFS 214
             +I+ S
Sbjct: 68  KQKIFMS 74

>pdb|2ECG|A Chain A, Solution Structure Of The Ring Domain Of The Baculoviral Iap Repeat-Containing Protein 4 From Homo Sapiens Length = 75

Iteration: 1
 Score = 48.5 bits (114), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 24/67 (35%), Positives = 36/67 (53%), Gaps = 5/67 (7%)
Query: 148 SDEDVAGDIPDGQLCVVCLTRRRISAFNPCGHLVCCRRCAISVEREASPKCPVCRMTVRS 207
           S E+    + + +LC +C+ R     F PCGHLV C++CA     EA  KCP+C   +  
Sbjct: 14  STEEQLRRLQEEKLCKICMDRNIAIVFVPCGHLVTCKQCA-----EAVDKCPMCYTVITF 68
Query: 208 SMRIYFS 214
             +I+ S
Sbjct: 69  KQKIFMS 75

>pdb|4IC3|A Chain A, Crystal Structure Of The F495l Mutant Xiap Ring Domain Length = 74

Iteration: 1
 Score = 47.0 bits (110), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 24/67 (35%), Positives = 35/67 (52%), Gaps = 5/67 (7%)
Query: 148 SDEDVAGDIPDGQLCVVCLTRRRISAFNPCGHLVCCRRCAISVEREASPKCPVCRMTVRS 207
           S E+    + + +LC +C+ R     F PCGHLV C++CA     EA  KCP+C   +  
Sbjct: 13  STEEQLRRLQEEKLCKICMDRNIAIVFVPCGHLVTCKQCA-----EAVDKCPMCYTVITF 67
Query: 208 SMRIYFS 214
             +I  S
Sbjct: 68  KQKILMS 74

>pdb|2YHN|A Chain A, The Idol-Ube2d Complex Mediates Sterol-Dependent Degradation Of The Ldl Receptor Length = 79

Iteration: 1
 Score = 45.8 bits (107), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 22/59 (37%), Positives = 28/59 (47%), Gaps = 5/59 (8%)
Query: 155 DIPDGQLCVVCLTRRRISAFNPCGHLVCCRRCAISVEREASPKCPVCRMTVRSSMRIYF 213
            + +  LC+VC      S F PCGH VCC  CA  ++      CPVCR  V     +Y 
Sbjct: 14  KLKEAMLCMVCCEEEINSTFCPCGHTVCCESCAAQLQ-----SCPVCRSRVEHVQHVYL 67

>pdb|4AUQ|B Chain B, Structure Of Birc7-Ubch5b-Ub Complex. Length = 62

Iteration: 1
 Score = 41.2 bits (95), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 27/68 (39%), Positives = 35/68 (51%), Gaps = 6/68 (8%)
Query: 147 GSDEDVAGDIPDGQLCVVCLTRRRISAFNPCGHLVCCRRCAISVEREASPKCPVCRMTVR 206
           GS E     + + + C VCL R     F PCGHLV C  CA  ++      CP+CR  VR
Sbjct: 1   GSVEAQLRRLQEERTCKVCLDRAVSIVFVPCGHLV-CAECAPGLQ-----LCPICRAPVR 54
Query: 207 SSMRIYFS 214
           S +R + S
Sbjct: 55  SRVRTFLS 62

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	214
2ecg_A	75	Baculoviral IAP repeat-containing protein 4; BIRC4	1e-18
2yho_A	79	E3 ubiquitin-protein ligase mylip; ligase, E2 liga	3e-17
2ea5_A	68	Cell growth regulator with ring finger domain prot	4e-15
3t6p_A	345	Baculoviral IAP repeat-containing protein 2; ring,	5e-15
2vje_B	63	MDM4 protein; proto-oncogene, phosphorylation, alt	1e-14
2vje_A	64	E3 ubiquitin-protein ligase MDM2; proto-oncogene,	3e-14
2y1n_A	389	E3 ubiquitin-protein ligase; ligase-transferase co	1e-08
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	1e-06
3hct_A	118	TNF receptor-associated factor 6; cross-brace, bet	1e-05
3lrq_A	100	E3 ubiquitin-protein ligase TRIM37; structural gen	3e-05
3knv_A	141	TNF receptor-associated factor 2; cross-brace, alt	3e-05
4epo_C	149	E3 ubiquitin-protein ligase RNF8; coiled-coil, E3	7e-05
3fl2_A	124	E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA	9e-05
1g25_A	65	CDK-activating kinase assembly factor MAT1; ring f	2e-04
2ecy_A	66	TNF receptor-associated factor 3; metal binding pr	2e-04
3l11_A	115	E3 ubiquitin-protein ligase RNF168; E3 ligase, rin	2e-04
3hcs_A	170	TNF receptor-associated factor 6; cross-brace, bet	3e-04
2d8t_A	71	Dactylidin, ring finger protein 146; RNF146, ring	6e-04

>2ecg_A Baculoviral IAP repeat-containing protein 4; BIRC4, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 75

 Score = 76.0 bits (187), Expect = 1e-18
 Identities = 24/78 (30%), Positives = 41/78 (52%), Gaps = 5/78 (6%)

Query: 137 APSDDADSQIGSDEDVAGDIPDGQLCVVCLTRRRISAFNPCGHLVCCRRCAISVEREASP 196
           + S  +  +  S E+    + + +LC +C+ R     F PCGHLV C++CA +V+     
Sbjct: 3   SGSSGSLQKEISTEEQLRRLQEEKLCKICMDRNIAIVFVPCGHLVTCKQCAEAVD----- 57

Query: 197 KCPVCRMTVRSSMRIYFS 214
           KCP+C   +    +I+ S
Sbjct: 58  KCPMCYTVITFKQKIFMS 75

>2yho_A E3 ubiquitin-protein ligase mylip; ligase, E2 ligase-E3 ligase complex, ring zinc-finger, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 2yhn_A Length = 79

 Score = 72.5 bits (178), Expect = 3e-17
 Identities = 22/60 (36%), Positives = 28/60 (46%), Gaps = 5/60 (8%)

Query: 155 DIPDGQLCVVCLTRRRISAFNPCGHLVCCRRCAISVEREASPKCPVCRMTVRSSMRIYFS 214
            + +  LC+VC      S F PCGH VCC  CA  ++      CPVCR  V     +Y  
Sbjct: 14  KLKEAMLCMVCCEEEINSTFCPCGHTVCCESCAAQLQ-----SCPVCRSRVEHVQHVYLP 68

>2ea5_A Cell growth regulator with ring finger domain protein 1; CGRRF1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 68

 Score = 66.4 bits (162), Expect = 4e-15
 Identities = 16/65 (24%), Positives = 23/65 (35%), Gaps = 5/65 (7%)

Query: 148 SDEDVAGDIPDGQLCVVCLTRRRISAFNPCGHLVCCRRCAISVEREASPKCPVCRMTVRS 207
               V     + + CVVC          PC H   C  C    +     +CP+CR  V+ 
Sbjct: 4   GSSGVEPSEENSKDCVVCQNGTVNWVLLPCRHTCLCDGCVKYFQ-----QCPMCRQFVQE 58

Query: 208 SMRIY 212
           S  + 
Sbjct: 59  SFALS 63

>3t6p_A Baculoviral IAP repeat-containing protein 2; ring, BIR, CARD, UBA, apoptosis, ubiquitin ligase, SMAC/ ubiquitin, caspase, IAP family, SMAC mimetic; 1.90A {Homo sapiens} PDB: 1qbh_A 2l9m_A 3eb5_A 3eb6_A Length = 345

 Score = 71.5 bits (173), Expect = 5e-15
 Identities = 24/94 (25%), Positives = 40/94 (42%), Gaps = 5/94 (5%)

Query: 121 NRWKDRQQRMSRQLTEAPSDDADSQIGSDEDVAGDIPDGQLCVVCLTRRRISAFNPCGHL 180
                  + +            D    S E+    + + + C VC+ +     F PCGHL
Sbjct: 257 EIDSTLYKNLFVDKNMKYIPTEDVSGLSLEEQLRRLQEERTCKVCMDKEVSVVFIPCGHL 316

Query: 181 VCCRRCAISVEREASPKCPVCRMTVRSSMRIYFS 214
           V C+ CA S+      KCP+CR  ++ ++R + S
Sbjct: 317 VVCQECAPSLR-----KCPICRGIIKGTVRTFLS 345

>2vje_B MDM4 protein; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_B* Length = 63

 Score = 64.9 bits (158), Expect = 1e-14
 Identities = 15/59 (25%), Positives = 29/59 (49%), Gaps = 3/59 (5%)

Query: 158 DGQLCVVCLTRRRISAF--NPCGHLVCCRRCAISVEREASPKCPVCRMTVRSSMRIYFS 214
             + C +C  R R         GHLV C  CA  + ++A   CP+C+  ++  ++++ +
Sbjct: 6   LLKPCSLCEKRPRDGNIIHGRTGHLVTCFHCARRL-KKAGASCPICKKEIQLVIKVFIA 63

>2vje_A E3 ubiquitin-protein ligase MDM2; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_A* 2hdp_A Length = 64

 Score = 64.1 bits (156), Expect = 3e-14
 Identities = 17/61 (27%), Positives = 28/61 (45%), Gaps = 3/61 (4%)

Query: 155 DIPDGQLCVVCLTRRRISAFNP--CGHLVCCRRCAISVEREASPKCPVCRMTVRSSMRIY 212
            +   + CV+C  R +         GHL+ C  CA  +++     CPVCR  ++  +  Y
Sbjct: 4   PLNAIEPCVICQGRPKNGCIVHGKTGHLMACFTCAKKLKKRNK-PCPVCRQPIQMIVLTY 62

Query: 213 F 213
           F
Sbjct: 63  F 63

>2y1n_A E3 ubiquitin-protein ligase; ligase-transferase complex, ubiquitin ring E3 ligase; HET: PTR; 2.00A {Homo sapiens} PDB: 2y1m_A* 4a4c_A* 4a4b_A* 1fbv_A* 3vgo_A 4a49_A* 2k4d_A 2ldr_A* Length = 389

 Score = 52.8 bits (126), Expect = 1e-08
 Identities = 20/89 (22%), Positives = 31/89 (34%), Gaps = 1/89 (1%)

Query: 124 KDRQQRMSRQLTEAPSDDADSQIGSDEDVAGDIPDGQLCVVCLTRRRISAFNPCGHLVCC 183
           +++   ++      P D         E         QLC +C    +     PCGHL  C
Sbjct: 297 RNQNPDLTGLCEPTPQDHIKVTQEQYELYCEMGSTFQLCKICAENDKDVKIEPCGHL-MC 355

Query: 184 RRCAISVEREASPKCPVCRMTVRSSMRIY 212
             C  S +      CP CR  ++ +  I 
Sbjct: 356 TSCLTSWQESEGQGCPFCRCEIKGTEPIV 384

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 47.9 bits (113), Expect = 1e-06
 Identities = 27/176 (15%), Positives = 44/176 (25%), Gaps = 48/176 (27%)

Query: 14  YQR--LELANVSPFTFLQAMFGLKCPIGVLAEEKILPLGKDISAVGICSFKNGIPEIKSC 71
           Y+   L L NV       A F L C        KIL   +        S       I   
Sbjct: 243 YENCLLVLLNVQNAKAWNA-FNLSC--------KILLTTRFKQVTDFLSAATTT-HISLD 292

Query: 72  KDLPYFLSEKTKDLMVVDLVNRSKILFWSGIVLGSLS----------IGILGYAIVRNW- 120
                   ++ K L+        K L         L           + I+    +R+  
Sbjct: 293 HHSMTLTPDEVKSLL-------LKYL---DCRPQDLPREVLTTNPRRLSIIA-ESIRDGL 341

Query: 121 NRWKDRQQRMSRQLTEAPSDDADSQIGSD------------EDVAGDIPDGQLCVV 164
             W + +     +LT       +    ++                  IP   L ++
Sbjct: 342 ATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSA--HIPTILLSLI 395

>3hct_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 3hcu_A 2eci_A 2jmd_A Length = 118

 Score = 42.1 bits (99), Expect = 1e-05
 Identities = 19/66 (28%), Positives = 28/66 (42%), Gaps = 1/66 (1%)

Query: 143 DSQIGSDEDVAGDIPDGQLCVVCLTRRRISAFNPCGHLVCCRRCAISVEREASPKCPVCR 202
           +   G D +    +     C +CL   R +   PCGH   C+ C I   R+A  KCPV  
Sbjct: 2   EEIQGYDVEFDPPLESKYECPICLMALREAVQTPCGHR-FCKACIIKSIRDAGHKCPVDN 60

Query: 203 MTVRSS 208
             +  +
Sbjct: 61  EILLEN 66

>3lrq_A E3 ubiquitin-protein ligase TRIM37; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: MSE; 2.29A {Homo sapiens} Length = 100

 Score = 40.6 bits (95), Expect = 3e-05
 Identities = 17/63 (26%), Positives = 25/63 (39%), Gaps = 2/63 (3%)

Query: 148 SDEDVAGDIPDGQLCVVCLTRRRISAFNP-CGHLVCCRRCAISVEREASPKCPVCRMTVR 206
            DE     I +   C +C+ + R +   P C  L CC  C      E   +CP CR  ++
Sbjct: 11  MDEQSVESIAEVFRCFICMEKLRDARLCPHCSKL-CCFSCIRRWLTEQRAQCPHCRAPLQ 69

Query: 207 SSM 209
              
Sbjct: 70  LRE 72

>3knv_A TNF receptor-associated factor 2; cross-brace, alternative splicing, apoptosis, cytoplasm, metal-binding, UBL conjugation, zinc, zinc-finger; 1.90A {Homo sapiens} Length = 141

 Score = 41.6 bits (97), Expect = 3e-05
 Identities = 16/74 (21%), Positives = 21/74 (28%), Gaps = 2/74 (2%)

Query: 130 MSRQLTEAPSDDADSQIGSDED-VAGDIPDGQLCVVCLTRRRISAFNPCGHLVCCRRCAI 188
           M+      P      Q G  +  +   +    LC  C    R      CGH   C  C  
Sbjct: 1   MAAASVTPPGSLELLQPGFSKTLLGTKLEAKYLCSACRNVLRRPFQAQCGH-RYCSFCLA 59

Query: 189 SVEREASPKCPVCR 202
           S+       C  C 
Sbjct: 60  SILSSGPQNCAACV 73

>4epo_C E3 ubiquitin-protein ligase RNF8; coiled-coil, E3 ubiquitin ligase, protein binding complex; 4.80A {Homo sapiens} Length = 149

 Score = 40.8 bits (95), Expect = 7e-05
 Identities = 14/96 (14%), Positives = 32/96 (33%), Gaps = 2/96 (2%)

Query: 115 AIVRNWNRWKDRQQRMSRQLTEAPSDDADSQIGSDEDVAGDIPDGQLCVVCLTRRRISAF 174
              +++      + +   Q  E        +      +   + +   C++C      +  
Sbjct: 20  RSKKDFEAIIQAKNKELEQTKEEKEKMQAQKEEVLSHMNDVLENELQCIICSEYFIEAVT 79

Query: 175 NPCGHLVCCRRCAISVEREASPKCPVCRMTVRSSMR 210
             C H  C   C I+   +   +CP+CR  ++S   
Sbjct: 80  LNCAHSFC-SYC-INEWMKRKIECPICRKDIKSKTY 113

>3fl2_A E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA damage, DNA repair, ring finger domain, metal binding, DNA replication; 1.75A {Homo sapiens} Length = 124

 Score = 40.0 bits (93), Expect = 9e-05
 Identities = 16/84 (19%), Positives = 24/84 (28%), Gaps = 1/84 (1%)

Query: 125 DRQQRMSRQLTEAPSDDADSQIGSDEDVAGDIPDGQLCVVCLTRRRISAFNPCGHLVCCR 184
           D+          A   D  +     +     + +   C+ C           C H VC +
Sbjct: 18  DKSNAKLWNEVLASLKDRPASGSPFQLFLSKVEETFQCICCQELVFRPITTVCQHNVC-K 76

Query: 185 RCAISVEREASPKCPVCRMTVRSS 208
            C     R     CP CR  +  S
Sbjct: 77  DCLDRSFRAQVFSCPACRYDLGRS 100

>1g25_A CDK-activating kinase assembly factor MAT1; ring finger (C3HC4), metal binding protein; NMR {Homo sapiens} SCOP: g.44.1.1 Length = 65

 Score = 37.6 bits (87), Expect = 2e-04
 Identities = 15/54 (27%), Positives = 21/54 (38%), Gaps = 6/54 (11%)

Query: 158 DGQLCVVCLTRRRIS-----AFNPCGHLVCCRRCAISVEREASPKCPVCRMTVR 206
           D Q C  C T +  +       N CGH +C   C   +    +  CP C   +R
Sbjct: 2   DDQGCPRCKTTKYRNPSLKLMVNVCGHTLC-ESCVDLLFVRGAGNCPECGTPLR 54

>2ecy_A TNF receptor-associated factor 3; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 66

 Score = 37.8 bits (88), Expect = 2e-04
 Identities = 12/47 (25%), Positives = 18/47 (38%), Gaps = 1/47 (2%)

Query: 161 LCVVCLTRRRISAFNPCGHLVCCRRCAISVEREASPKCPVCRMTVRS 207
            C  C           CGH   C  C  ++   +SPKC  C+ ++  
Sbjct: 17  KCEKCHLVLCSPKQTECGH-RFCESCMAALLSSSSPKCTACQESIVK 62

>3l11_A E3 ubiquitin-protein ligase RNF168; E3 ligase, ring domain, DNA damage, chromatin regulator, chromosomal protein, DNA repair, metal-binding; 2.12A {Homo sapiens} Length = 115

 Score = 38.4 bits (89), Expect = 2e-04
 Identities = 17/50 (34%), Positives = 22/50 (44%), Gaps = 1/50 (2%)

Query: 162 CVVCLTRRRISAFNPCGHLVCCRRCAISVEREASPKCPVCRMTVRSSMRI 211
           C +C+         PC H +C + C  S   +AS  CP CR  V S  R 
Sbjct: 18  CGICMEILVEPVTLPCNHTLC-KPCFQSTVEKASLCCPFCRRRVSSWTRY 66

>3hcs_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.20A {Homo sapiens} Length = 170

 Score = 38.9 bits (90), Expect = 3e-04
 Identities = 19/62 (30%), Positives = 27/62 (43%), Gaps = 1/62 (1%)

Query: 147 GSDEDVAGDIPDGQLCVVCLTRRRISAFNPCGHLVCCRRCAISVEREASPKCPVCRMTVR 206
           G D +    +     C +CL   R +   PCGH   C+ C I   R+A  KCPV    + 
Sbjct: 6   GYDVEFDPPLESKYECPICLMALREAVQTPCGHR-FCKACIIKSIRDAGHKCPVDNEILL 64

Query: 207 SS 208
            +
Sbjct: 65  EN 66

>2d8t_A Dactylidin, ring finger protein 146; RNF146, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 71

 Score = 36.3 bits (84), Expect = 6e-04
 Identities = 12/44 (27%), Positives = 17/44 (38%), Gaps = 2/44 (4%)

Query: 162 CVVCLTRRRISAFNPCGHLVCCRRCAISVEREASPKCPVCRMTV 205
           C +CL         PC H V C  C +        +C +CR  +
Sbjct: 18  CAICLQTCVHPVSLPCKH-VFCYLC-VKGASWLGKRCALCRQEI 59

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	214
2vje_A	64	E3 ubiquitin-protein ligase MDM2; proto-oncogene,	99.58
2vje_B	63	MDM4 protein; proto-oncogene, phosphorylation, alt	99.58
2ea5_A	68	Cell growth regulator with ring finger domain prot	99.58
2yho_A	79	E3 ubiquitin-protein ligase mylip; ligase, E2 liga	99.49
4ic3_A	74	E3 ubiquitin-protein ligase XIAP; ring domain, zin	99.48
2ecg_A	75	Baculoviral IAP repeat-containing protein 4; BIRC4	99.43
2ecy_A	66	TNF receptor-associated factor 3; metal binding pr	99.32
2ysl_A	73	Tripartite motif-containing protein 31; ring-type	99.32
2d8t_A	71	Dactylidin, ring finger protein 146; RNF146, ring	99.31
2yur_A	74	Retinoblastoma-binding protein 6; P53-associated c	99.29
2ecn_A	70	Ring finger protein 141; RNF141, ring domain, zinc	99.29
2djb_A	72	Polycomb group ring finger protein 6; PCGF6, ring	99.28
2csy_A	81	Zinc finger protein 183-like 1; ring finger protei	99.27
2ea6_A	69	Ring finger protein 4; RNF4, RES4-26, ring domain,	99.26
2ct2_A	88	Tripartite motif protein 32; zinc-finger protein H	99.23
1t1h_A	78	Gspef-atpub14, armadillo repeat containing protein	99.23
2egp_A	79	Tripartite motif-containing protein 34; ZF-C3HC4 d	99.23
4ayc_A	138	E3 ubiquitin-protein ligase RNF8; DNA damage, K63	99.23
3ztg_A	92	E3 ubiquitin-protein ligase RBBP6; PACT, U-BOX, mR	99.21
1e4u_A	78	Transcriptional repressor NOT4; gene regulation, t	99.2
2xeu_A	64	Ring finger protein 4; transcription, zinc-finger,	99.2
3ng2_A	71	RNF4, snurf, ring finger protein 4; ring domain, E	99.2
2ecw_A	85	Tripartite motif-containing protein 30; metal bind	99.19
2kiz_A	69	E3 ubiquitin-protein ligase arkadia; ring-H2 finge	99.19
1chc_A	68	Equine herpes virus-1 ring domain; viral protein;	99.19
2ysj_A	63	Tripartite motif-containing protein 31; ring-type	99.17
3fl2_A	124	E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA	99.17
3l11_A	115	E3 ubiquitin-protein ligase RNF168; E3 ligase, rin	99.16
3lrq_A	100	E3 ubiquitin-protein ligase TRIM37; structural gen	99.16
1g25_A	65	CDK-activating kinase assembly factor MAT1; ring f	99.16
2ect_A	78	Ring finger protein 126; metal binding protein, st	99.15
2ecj_A	58	Tripartite motif-containing protein 39; TRIM39, ri	99.15
2ecv_A	85	Tripartite motif-containing protein 5; metal bindi	99.15
3t6p_A	345	Baculoviral IAP repeat-containing protein 2; ring,	99.14
2ecm_A	55	Ring finger and CHY zinc finger domain- containing	99.13
2ep4_A	74	Ring finger protein 24; zinc binding, ubiquitin, E	99.13
1iym_A	55	EL5; ring-H2 finger, ubiquitin ligase, DNA binding	99.12
2l0b_A	91	E3 ubiquitin-protein ligase praja-1; zinc finger,	99.11
1z6u_A	150	NP95-like ring finger protein isoform B; structura	99.08
1x4j_A	75	Ring finger protein 38; structural genomics, NPPSF	99.07
3hct_A	118	TNF receptor-associated factor 6; cross-brace, bet	99.06
2kr4_A	85	Ubiquitin conjugation factor E4 B; U-BOX, UFD2, ri	99.06
1wgm_A	98	Ubiquitin conjugation factor E4A; ubiquitinating e	99.06
2ckl_B	165	Ubiquitin ligase protein RING2; BMI1, RING1B, poly	99.05
2kre_A	100	Ubiquitin conjugation factor E4 B; U-box domain, E	99.05
2y43_A	99	E3 ubiquitin-protein ligase RAD18; DNA repair, met	99.04
1bor_A	56	Transcription factor PML; proto-oncogene, nuclear	99.04
2ckl_A	108	Polycomb group ring finger protein 4; BMI1, RING1B	99.02
1rmd_A	116	RAG1; V(D)J recombination, antibody, MAD, ring fin	99.02
2y1n_A	389	E3 ubiquitin-protein ligase; ligase-transferase co	99.02
3knv_A	141	TNF receptor-associated factor 2; cross-brace, alt	99.01
1jm7_A	112	BRCA1, breast cancer type 1 susceptibility protein	98.97
1v87_A	114	Deltex protein 2; ring-H2 domain, zinc-binding dom	98.95
4ap4_A	133	E3 ubiquitin ligase RNF4; ligase-signalling protei	98.89
2ecl_A	81	Ring-box protein 2; RNF7, ring domian, zinc-bindin	98.87
2c2l_A	281	CHIP, carboxy terminus of HSP70-interacting protei	98.87
1jm7_B	117	BARD1, BRCA1-associated ring domain protein 1; rin	98.86
3hcs_A	170	TNF receptor-associated factor 6; cross-brace, bet	98.85
2f42_A	179	STIP1 homology and U-box containing protein 1; cha	98.81
4ap4_A	133	E3 ubiquitin ligase RNF4; ligase-signalling protei	98.78
2yu4_A	94	E3 SUMO-protein ligase NSE2; SP-ring domain, struc	98.74
3dpl_R	106	Ring-box protein 1; ubiquitin, NEDD8, cullin, HOST	98.68
3htk_C	267	E3 SUMO-protein ligase MMS21; SUMO E3 ligase, SPL-	98.5
2d8s_A	80	Cellular modulator of immune recognition; C-MIR, m	98.44
4a0k_B	117	E3 ubiquitin-protein ligase RBX1; ligase-DNA-bindi	98.42
3vk6_A	101	E3 ubiquitin-protein ligase hakai; HYB, phosphotyr	98.34
1wim_A	94	KIAA0161 protein; ring finger domain, UBCM4-intera	98.29
2bay_A	61	PRE-mRNA splicing factor PRP19; U-BOX, ubiquitin l	97.89
2ct0_A	74	Non-SMC element 1 homolog; ring domain, structural	97.88
1vyx_A	60	ORF K3, K3RING; zinc-binding protein, ring domain,	97.85
3k1l_B	381	Fancl; UBC, ring, RWD, ligase; HET: MAL CIT; 3.20A	97.47
2jun_A	101	Midline-1; B-BOX, TRIM, ring finger, alternative s	94.75
3nw0_A	238	Non-structural maintenance of chromosomes element	94.63
2ko5_A	99	Ring finger protein Z; lassa fever virus-Z, negati	93.65
2cs3_A	93	Protein C14ORF4, MY039 protein; ZF-C3HC4 domain, s	92.79
1i4o_C	141	X-linked IAP, baculoviral IAP repeat-containing pr	92.44
2i3h_A	133	Baculoviral IAP repeat-containing protein 7; zinc	90.96
2poi_A	94	Baculoviral IAP repeat-containing protein 4; zinc	88.98
2qra_D	111	XIAP, baculoviral IAP repeat-containing protein 4,	88.64
1jd5_A	124	DIAP1, apoptosis 1 inhibitor; IAP, caspase activat	87.75
2vm5_A	106	Baculoviral IAP repeat-containing protein 1; apopt	87.43
3mup_A	122	Baculoviral IAP repeat-containing protein 2; zinc-	84.72
1g73_C	121	Inhibitors of apoptosis-like protein ILP; helix bu	84.33
1se0_A	116	Apoptosis 1 inhibitor; apoptosis, IAP, BIR, caspas	83.86
3d9t_A	97	Baculoviral IAP repeat-containing protein 2; zinc	83.8
3m1d_A	85	Baculoviral IAP repeat-containing protein 2; BIR,	82.15
3t6p_A	345	Baculoviral IAP repeat-containing protein 2; ring,	81.36
3hl5_A	95	Baculoviral IAP repeat-containing protein 4; BIR,	80.4

>2vje_A E3 ubiquitin-protein ligase MDM2; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_A* 2hdp_A

Probab=99.58  E-value=6.3e-16  Score=101.30  Aligned_cols=56  Identities=30%  Similarity=0.723  Sum_probs=50.0

Q ss_pred             cccccccccccccceEEc--cCCCccccHhhHHHhhcCCCcccccccccccceEEeeeC
Q 028047          158 DGQLCVVCLTRRRISAFN--PCGHLVCCRRCAISVEREASPKCPVCRMTVRSSMRIYFS  214 (214)
Q Consensus       158 ~~~~C~IC~~~~~~~~~l--pCgH~~~C~~C~~~~~~~~~~~CP~CR~~i~~~~~i~~s  214 (214)
                      ++..|+||++++++++++  ||||.++|..|+..++.. +..||+||++|..++++|.|
T Consensus         7 ~~~~C~IC~~~~~~~~~~~~pCgH~~~C~~C~~~~~~~-~~~CPiCR~~i~~~i~i~~~   64 (64)
T 2vje_A            7 AIEPCVICQGRPKNGCIVHGKTGHLMACFTCAKKLKKR-NKPCPVCRQPIQMIVLTYFP   64 (64)
T ss_dssp             GGSCCTTTSSSCSCEEEEETTEEEEEECHHHHHHHHHT-TCCCTTTCCCCCEEEEEECC
T ss_pred             CcCCCCcCCCCCCCEEEECCCCCChhhHHHHHHHHHHc-CCcCCCcCcchhceEeeecC
Confidence            456899999999999988  999997799999999853 45799999999999999986

>2vje_B MDM4 protein; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_B*

Probab=99.58  E-value=8.4e-16  Score=100.39  Aligned_cols=56  Identities=25%  Similarity=0.665  Sum_probs=49.6

Q ss_pred             cccccccccccccceEEc--cCCCccccHhhHHHhhcCCCcccccccccccceEEeeeC
Q 028047          158 DGQLCVVCLTRRRISAFN--PCGHLVCCRRCAISVEREASPKCPVCRMTVRSSMRIYFS  214 (214)
Q Consensus       158 ~~~~C~IC~~~~~~~~~l--pCgH~~~C~~C~~~~~~~~~~~CP~CR~~i~~~~~i~~s  214 (214)
                      ....|+||++++++++++  ||||.+.|..|+.+++.. +..||+||++|..++++|.|
T Consensus         6 ~~~~C~IC~~~~~~~~~~~~pCgH~~~C~~C~~~~~~~-~~~CPiCR~~i~~~i~i~~s   63 (63)
T 2vje_B            6 LLKPCSLCEKRPRDGNIIHGRTGHLVTCFHCARRLKKA-GASCPICKKEIQLVIKVFIA   63 (63)
T ss_dssp             GGSBCTTTSSSBSCEEEEETTEEEEEECHHHHHHHHHT-TCBCTTTCCBCCEEEEEEEC
T ss_pred             cCCCCcccCCcCCCeEEEecCCCCHhHHHHHHHHHHHh-CCcCCCcCchhhceEEEecC
Confidence            356899999999999887  999996699999999854 35899999999999999986

>2ea5_A Cell growth regulator with ring finger domain protein 1; CGRRF1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.58  E-value=1e-15  Score=101.55  Aligned_cols=55  Identities=27%  Similarity=0.585  Sum_probs=48.3

Q ss_pred             CCccccccccccccccceEEccCCCccccHhhHHHhhcCCCcccccccccccceEEeeeC
Q 028047          155 DIPDGQLCVVCLTRRRISAFNPCGHLVCCRRCAISVEREASPKCPVCRMTVRSSMRIYFS  214 (214)
Q Consensus       155 ~~~~~~~C~IC~~~~~~~~~lpCgH~~~C~~C~~~~~~~~~~~CP~CR~~i~~~~~i~~s  214 (214)
                      ...+...|+||++++++++++||||.+.|..|+..+.     .||+||++|...+++|.+
T Consensus        11 ~~~~~~~C~IC~~~~~~~v~~pCgH~~~C~~C~~~~~-----~CP~CR~~i~~~~~i~~~   65 (68)
T 2ea5_A           11 SEENSKDCVVCQNGTVNWVLLPCRHTCLCDGCVKYFQ-----QCPMCRQFVQESFALSGP   65 (68)
T ss_dssp             SCCCSSCCSSSSSSCCCCEETTTTBCCSCTTHHHHCS-----SCTTTCCCCCCEECCCSS
T ss_pred             cCCCCCCCCCcCcCCCCEEEECCCChhhhHHHHhcCC-----CCCCCCcchhceEEeecC
Confidence            3345678999999999999999999966999999754     899999999999999963

>2yho_A E3 ubiquitin-protein ligase mylip; ligase, E2 ligase-E3 ligase complex, ring zinc-finger, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 2yhn_A

Probab=99.49  E-value=1.8e-15  Score=103.27  Aligned_cols=55  Identities=40%  Similarity=1.001  Sum_probs=49.0

Q ss_pred             CCccccccccccccccceEEccCCCccccHhhHHHhhcCCCcccccccccccceEEeeeC
Q 028047          155 DIPDGQLCVVCLTRRRISAFNPCGHLVCCRRCAISVEREASPKCPVCRMTVRSSMRIYFS  214 (214)
Q Consensus       155 ~~~~~~~C~IC~~~~~~~~~lpCgH~~~C~~C~~~~~~~~~~~CP~CR~~i~~~~~i~~s  214 (214)
                      .+.++..|+||++..++++++||||.++|..|+..++     .||+||++|...+++|.+
T Consensus        14 ~l~~~~~C~IC~~~~~~~v~~pCgH~~~C~~C~~~~~-----~CP~Cr~~i~~~~~i~~p   68 (79)
T 2yho_A           14 KLKEAMLCMVCCEEEINSTFCPCGHTVCCESCAAQLQ-----SCPVCRSRVEHVQHVYLP   68 (79)
T ss_dssp             HHHHHTBCTTTSSSBCCEEEETTCBCCBCHHHHTTCS-----BCTTTCCBCCEEEECBCT
T ss_pred             cCCCCCEeEEeCcccCcEEEECCCCHHHHHHHHHhcC-----cCCCCCchhhCeEEEEeC
Confidence            3445678999999999999999999955999999886     899999999999999974

>4ic3_A E3 ubiquitin-protein ligase XIAP; ring domain, zinc-finger, E3 ligase; 1.78A {Homo sapiens} PDB: 4ic2_A

Probab=99.48  E-value=2.7e-15  Score=101.06  Aligned_cols=55  Identities=38%  Similarity=0.952  Sum_probs=48.3

Q ss_pred             CCccccccccccccccceEEccCCCccccHhhHHHhhcCCCcccccccccccceEEeeeC
Q 028047          155 DIPDGQLCVVCLTRRRISAFNPCGHLVCCRRCAISVEREASPKCPVCRMTVRSSMRIYFS  214 (214)
Q Consensus       155 ~~~~~~~C~IC~~~~~~~~~lpCgH~~~C~~C~~~~~~~~~~~CP~CR~~i~~~~~i~~s  214 (214)
                      .+.++..|+||++...+++++||||.+.|..|+..|.     .||+||++|...+++|.|
T Consensus        20 ~~~~~~~C~iC~~~~~~~~~~pCgH~~~C~~C~~~~~-----~CP~Cr~~i~~~~~i~~S   74 (74)
T 4ic3_A           20 RLQEEKLCKICMDRNIAIVFVPCGHLVTCKQCAEAVD-----KCPMCYTVITFKQKILMS   74 (74)
T ss_dssp             HHHHHTBCTTTSSSBCCEEEETTCCBCCCHHHHTTCS-----BCTTTCCBCSEEEECBC-
T ss_pred             cCccCCCCCCCCCCCCCEEEcCCCChhHHHHhhhcCc-----cCCCcCcCccCcEEEeeC
Confidence            3455679999999999999999999944999999883     899999999999999986

>2ecg_A Baculoviral IAP repeat-containing protein 4; BIRC4, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.43  E-value=4.9e-15  Score=100.00  Aligned_cols=55  Identities=38%  Similarity=0.983  Sum_probs=48.1

Q ss_pred             CCccccccccccccccceEEccCCCccccHhhHHHhhcCCCcccccccccccceEEeeeC
Q 028047          155 DIPDGQLCVVCLTRRRISAFNPCGHLVCCRRCAISVEREASPKCPVCRMTVRSSMRIYFS  214 (214)
Q Consensus       155 ~~~~~~~C~IC~~~~~~~~~lpCgH~~~C~~C~~~~~~~~~~~CP~CR~~i~~~~~i~~s  214 (214)
                      ++.+...|+||++.+.+++++||||.+.|..|+....     .||+||++|...+++|.|
T Consensus        21 ~~~~~~~C~IC~~~~~~~~~~pCgH~~~C~~C~~~~~-----~CP~Cr~~i~~~~~i~~S   75 (75)
T 2ecg_A           21 RLQEEKLCKICMDRNIAIVFVPCGHLVTCKQCAEAVD-----KCPMCYTVITFKQKIFMS   75 (75)
T ss_dssp             HHHHHHSCSSSCSSCCCBCCSSSCCCCBCHHHHHHCS-----BCTTTCCBCCCCCBCCCC
T ss_pred             cCCCCCCCCcCCCCCCCEEEecCCCHHHHHHHhhCCC-----CCccCCceecCcEEEecC
Confidence            3445678999999999999999999933999998753     899999999999999986

>2ecy_A TNF receptor-associated factor 3; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.32  E-value=8.5e-13  Score=86.52  Aligned_cols=53  Identities=25%  Similarity=0.567  Sum_probs=45.8

Q ss_pred             CCCccccccccccccccceEEccCCCccccHhhHHHhhcCCCcccccccccccc
Q 028047          154 GDIPDGQLCVVCLTRRRISAFNPCGHLVCCRRCAISVEREASPKCPVCRMTVRS  207 (214)
Q Consensus       154 ~~~~~~~~C~IC~~~~~~~~~lpCgH~~~C~~C~~~~~~~~~~~CP~CR~~i~~  207 (214)
                      +.+.+...|+||++...+++.++|||.| |..|+..|.......||+||+++..
T Consensus        10 ~~~~~~~~C~IC~~~~~~p~~~~CgH~f-C~~Ci~~~~~~~~~~CP~Cr~~~~~   62 (66)
T 2ecy_A           10 KTVEDKYKCEKCHLVLCSPKQTECGHRF-CESCMAALLSSSSPKCTACQESIVK   62 (66)
T ss_dssp             CSCCCCEECTTTCCEESSCCCCSSSCCC-CHHHHHHHHTTSSCCCTTTCCCCCT
T ss_pred             hcCCcCCCCCCCChHhcCeeECCCCCHH-HHHHHHHHHHhCcCCCCCCCcCCCh
Confidence            3456678999999999999999999999 8999999985445689999999864

>2ysl_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.32  E-value=1.5e-12  Score=86.91  Aligned_cols=54  Identities=26%  Similarity=0.674  Sum_probs=45.8

Q ss_pred             cCCCccccccccccccccceEEccCCCccccHhhHHHhhc--CCCcccccccccccc
Q 028047          153 AGDIPDGQLCVVCLTRRRISAFNPCGHLVCCRRCAISVER--EASPKCPVCRMTVRS  207 (214)
Q Consensus       153 ~~~~~~~~~C~IC~~~~~~~~~lpCgH~~~C~~C~~~~~~--~~~~~CP~CR~~i~~  207 (214)
                      .+.+.+...|+||++...+++.++|||.| |..|+..|..  .....||+||+++..
T Consensus        14 ~~~~~~~~~C~IC~~~~~~~~~~~CgH~f-C~~Ci~~~~~~~~~~~~CP~Cr~~~~~   69 (73)
T 2ysl_A           14 VNKLQEEVICPICLDILQKPVTIDCGHNF-CLKCITQIGETSCGFFKCPLCKTSVRK   69 (73)
T ss_dssp             CCCCCCCCBCTTTCSBCSSEEECTTCCEE-EHHHHHHHCSSSCSCCCCSSSCCCCCC
T ss_pred             HHhCccCCEeccCCcccCCeEEcCCCChh-hHHHHHHHHHcCCCCCCCCCCCCcCCc
Confidence            34556678999999999999999999999 8999999985  234579999999864

>2d8t_A Dactylidin, ring finger protein 146; RNF146, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.31  E-value=1.6e-12  Score=86.43  Aligned_cols=50  Identities=22%  Similarity=0.539  Sum_probs=43.3

Q ss_pred             CccccccccccccccceEEccCCCccccHhhHHHhhcCCCcccccccccccc
Q 028047          156 IPDGQLCVVCLTRRRISAFNPCGHLVCCRRCAISVEREASPKCPVCRMTVRS  207 (214)
Q Consensus       156 ~~~~~~C~IC~~~~~~~~~lpCgH~~~C~~C~~~~~~~~~~~CP~CR~~i~~  207 (214)
                      ..+...|+||++...+++.+||||.| |..|+..|... ...||+||..+..
T Consensus        12 ~~~~~~C~IC~~~~~~~~~~~CgH~f-C~~Ci~~~~~~-~~~CP~Cr~~~~~   61 (71)
T 2d8t_A           12 SLTVPECAICLQTCVHPVSLPCKHVF-CYLCVKGASWL-GKRCALCRQEIPE   61 (71)
T ss_dssp             SSSCCBCSSSSSBCSSEEEETTTEEE-EHHHHHHCTTC-SSBCSSSCCBCCH
T ss_pred             CCCCCCCccCCcccCCCEEccCCCHH-HHHHHHHHHHC-CCcCcCcCchhCH
Confidence            34567899999999999999999999 89999998754 4689999999864

>2yur_A Retinoblastoma-binding protein 6; P53-associated cellular protein of testis, proliferation potential-related protein, protein P2P-R; NMR {Homo sapiens}

Probab=99.29  E-value=1.8e-12  Score=86.99  Aligned_cols=56  Identities=29%  Similarity=0.616  Sum_probs=46.8

Q ss_pred             cccCCCccccccccccccccceEEcc-CCCccccHhhHHHhhcCC-Ccccccccccccc
Q 028047          151 DVAGDIPDGQLCVVCLTRRRISAFNP-CGHLVCCRRCAISVEREA-SPKCPVCRMTVRS  207 (214)
Q Consensus       151 ~~~~~~~~~~~C~IC~~~~~~~~~lp-CgH~~~C~~C~~~~~~~~-~~~CP~CR~~i~~  207 (214)
                      +..+.+.+...|+||++...+++.+| |||.| |..|+..|.... ...||+||+++..
T Consensus         7 ~~~~~~~~~~~C~IC~~~~~~p~~~~~CgH~f-C~~Ci~~~~~~~~~~~CP~Cr~~~~~   64 (74)
T 2yur_A            7 GEDDPIPDELLCLICKDIMTDAVVIPCCGNSY-CDECIRTALLESDEHTCPTCHQNDVS   64 (74)
T ss_dssp             SCCCCSCGGGSCSSSCCCCTTCEECSSSCCEE-CTTHHHHHHHHSSSSCCSSSCCSSCC
T ss_pred             cccccCCCCCCCcCCChHHhCCeEcCCCCCHH-HHHHHHHHHHhcCCCcCCCCCCcCCC
Confidence            34556677889999999999999999 99999 899999998632 2579999997543

>2ecn_A Ring finger protein 141; RNF141, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.29  E-value=1.3e-12  Score=86.61  Aligned_cols=56  Identities=23%  Similarity=0.666  Sum_probs=47.3

Q ss_pred             CCCccccccccccccccceEEccCCCccccHhhHHHhhcCCCcccccccccccceEEee
Q 028047          154 GDIPDGQLCVVCLTRRRISAFNPCGHLVCCRRCAISVEREASPKCPVCRMTVRSSMRIY  212 (214)
Q Consensus       154 ~~~~~~~~C~IC~~~~~~~~~lpCgH~~~C~~C~~~~~~~~~~~CP~CR~~i~~~~~i~  212 (214)
                      +...+...|+||++...+ +.+||||.| |..|+..|.. ....||+||.++.....+|
T Consensus        10 ~~~~~~~~C~IC~~~~~~-~~~~CgH~f-c~~Ci~~~~~-~~~~CP~Cr~~~~~~~~~~   65 (70)
T 2ecn_A           10 KQLTDEEECCICMDGRAD-LILPCAHSF-CQKCIDKWSD-RHRNCPICRLQMTGANESS   65 (70)
T ss_dssp             CCCCCCCCCSSSCCSCCS-EEETTTEEE-CHHHHHHSSC-CCSSCHHHHHCTTCCCCCC
T ss_pred             hcCCCCCCCeeCCcCccC-cccCCCCcc-cHHHHHHHHH-CcCcCCCcCCcccCCCccc
Confidence            345567799999999999 889999999 8999999875 3568999999998776655

>2djb_A Polycomb group ring finger protein 6; PCGF6, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.28  E-value=2e-12  Score=86.24  Aligned_cols=56  Identities=21%  Similarity=0.462  Sum_probs=47.4

Q ss_pred             ccCCCccccccccccccccceEEc-cCCCccccHhhHHHhhcCCCcccccccccccceE
Q 028047          152 VAGDIPDGQLCVVCLTRRRISAFN-PCGHLVCCRRCAISVEREASPKCPVCRMTVRSSM  209 (214)
Q Consensus       152 ~~~~~~~~~~C~IC~~~~~~~~~l-pCgH~~~C~~C~~~~~~~~~~~CP~CR~~i~~~~  209 (214)
                      +.+++++...|+||++...+++.+ +|||.| |..|+..|... ...||+||..+....
T Consensus         8 ~~~~~~~~~~C~IC~~~~~~p~~~~~CgH~f-C~~Ci~~~~~~-~~~CP~Cr~~~~~~~   64 (72)
T 2djb_A            8 NLSELTPYILCSICKGYLIDATTITECLHTF-CKSCIVRHFYY-SNRCPKCNIVVHQTQ   64 (72)
T ss_dssp             CCCCCCGGGSCTTTSSCCSSCEECSSSCCEE-CHHHHHHHHHH-CSSCTTTCCCCCSSC
T ss_pred             hHhhcCCCCCCCCCChHHHCcCEECCCCCHH-HHHHHHHHHHc-CCcCCCcCcccCccc
Confidence            445667788999999999999987 999999 89999999853 458999999987643

>2csy_A Zinc finger protein 183-like 1; ring finger protein 161, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.27  E-value=3.2e-12  Score=87.14  Aligned_cols=52  Identities=21%  Similarity=0.545  Sum_probs=44.5

Q ss_pred             CCCccccccccccccccceEEccCCCccccHhhHHHhhcCCCcccccccccccc
Q 028047          154 GDIPDGQLCVVCLTRRRISAFNPCGHLVCCRRCAISVEREASPKCPVCRMTVRS  207 (214)
Q Consensus       154 ~~~~~~~~C~IC~~~~~~~~~lpCgH~~~C~~C~~~~~~~~~~~CP~CR~~i~~  207 (214)
                      ++..+...|+||++...+++.+||||.| |..|+..|... ...||+||.++..
T Consensus        10 ~~~~~~~~C~IC~~~~~~p~~~~CgH~f-C~~Ci~~~~~~-~~~CP~Cr~~~~~   61 (81)
T 2csy_A           10 EEEEIPFRCFICRQAFQNPVVTKCRHYF-CESCALEHFRA-TPRCYICDQPTGG   61 (81)
T ss_dssp             SCCCCCSBCSSSCSBCCSEEECTTSCEE-EHHHHHHHHHH-CSBCSSSCCBCCS
T ss_pred             ccCCCCCCCcCCCchhcCeeEccCCCHh-HHHHHHHHHHC-CCcCCCcCccccc
Confidence            3445567999999999999999999999 89999999853 4579999999864

>2ea6_A Ring finger protein 4; RNF4, RES4-26, ring domain, zinc- binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.26  E-value=2.4e-12  Score=84.72  Aligned_cols=53  Identities=21%  Similarity=0.569  Sum_probs=44.0

Q ss_pred             cCCCccccccccccccccce-------EEccCCCccccHhhHHHhhcCCCcccccccccccc
Q 028047          153 AGDIPDGQLCVVCLTRRRIS-------AFNPCGHLVCCRRCAISVEREASPKCPVCRMTVRS  207 (214)
Q Consensus       153 ~~~~~~~~~C~IC~~~~~~~-------~~lpCgH~~~C~~C~~~~~~~~~~~CP~CR~~i~~  207 (214)
                      .....+...|+||++...++       +.++|||.| |..|+..|... ...||+||.++..
T Consensus         9 ~~~~~~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~f-c~~Ci~~~~~~-~~~CP~Cr~~~~~   68 (69)
T 2ea6_A            9 GLRPSGTVSCPICMDGYSEIVQNGRLIVSTECGHVF-CSQCLRDSLKN-ANTCPTCRKKINH   68 (69)
T ss_dssp             CCCTTCCCCCTTTCCCHHHHTTTTCCEEECSSSCEE-EHHHHHHHHHH-CSSCTTTCCCCCC
T ss_pred             ccCCCCCCCCcccCccccccccccCCeEeCCCCChh-cHHHHHHHHHc-CCCCCCCCCccCc
Confidence            34455677999999998876       899999999 89999999754 4589999999864

>2ct2_A Tripartite motif protein 32; zinc-finger protein HT2A, TAT- interacting protein, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.23  E-value=6.4e-12  Score=86.67  Aligned_cols=54  Identities=22%  Similarity=0.604  Sum_probs=45.0

Q ss_pred             cCCCccccccccccccccc----eEEccCCCccccHhhHHHhhcCC--Ccccccccccccc
Q 028047          153 AGDIPDGQLCVVCLTRRRI----SAFNPCGHLVCCRRCAISVEREA--SPKCPVCRMTVRS  207 (214)
Q Consensus       153 ~~~~~~~~~C~IC~~~~~~----~~~lpCgH~~~C~~C~~~~~~~~--~~~CP~CR~~i~~  207 (214)
                      .+.+.+...|+||++...+    ++.++|||.| |..|+..|....  ...||+||..+..
T Consensus         9 ~~~~~~~~~C~IC~~~~~~~~~~~~~~~CgH~f-C~~Ci~~~~~~~~~~~~CP~Cr~~~~~   68 (88)
T 2ct2_A            9 LDALREVLECPICMESFTEEQLRPKLLHCGHTI-CRQCLEKLLASSINGVRCPFCSKITRI   68 (88)
T ss_dssp             CCCCCSCCBCTTTCCBCCTTSSCEEECSSSCEE-EHHHHHHHHHHCSSCBCCTTTCCCBCC
T ss_pred             hhhccCCCCCccCCccccccCCCeEECCCCChh-hHHHHHHHHHcCCCCcCCCCCCCcccc
Confidence            3455667799999999998    9999999999 899999997642  3579999998753

>1t1h_A Gspef-atpub14, armadillo repeat containing protein; ubiquitin ligase, E3 ligase, U-BOX,; NMR {Arabidopsis thaliana} SCOP: g.44.1.2

Probab=99.23  E-value=5.1e-12  Score=85.41  Aligned_cols=52  Identities=15%  Similarity=0.217  Sum_probs=45.8

Q ss_pred             CCccccccccccccccceEEccCCCccccHhhHHHhhcCCCcccccccccccc
Q 028047          155 DIPDGQLCVVCLTRRRISAFNPCGHLVCCRRCAISVEREASPKCPVCRMTVRS  207 (214)
Q Consensus       155 ~~~~~~~C~IC~~~~~~~~~lpCgH~~~C~~C~~~~~~~~~~~CP~CR~~i~~  207 (214)
                      ++++...|+||++...+++.++|||.| |..|+..|.......||+||.++..
T Consensus         4 ~~~~~~~C~IC~~~~~~Pv~~~CgH~f-c~~Ci~~~~~~~~~~CP~C~~~~~~   55 (78)
T 1t1h_A            4 EFPEYFRCPISLELMKDPVIVSTGQTY-ERSSIQKWLDAGHKTCPKSQETLLH   55 (78)
T ss_dssp             CCSSSSSCTTTSCCCSSEEEETTTEEE-EHHHHHHHHTTTCCBCTTTCCBCSS
T ss_pred             CCcccCCCCCccccccCCEEcCCCCee-cHHHHHHHHHHCcCCCCCCcCCCCh
Confidence            456678999999999999999999999 8999999986546789999999864

>2egp_A Tripartite motif-containing protein 34; ZF-C3HC4 domain, tripartite motif protein 34, interferon- responsive finger protein 1; NMR {Homo sapiens}

Probab=99.23  E-value=2.4e-12  Score=87.14  Aligned_cols=53  Identities=30%  Similarity=0.723  Sum_probs=45.2

Q ss_pred             CCCccccccccccccccceEEccCCCccccHhhHHHhhcCC------Ccccccccccccc
Q 028047          154 GDIPDGQLCVVCLTRRRISAFNPCGHLVCCRRCAISVEREA------SPKCPVCRMTVRS  207 (214)
Q Consensus       154 ~~~~~~~~C~IC~~~~~~~~~lpCgH~~~C~~C~~~~~~~~------~~~CP~CR~~i~~  207 (214)
                      +.+.+...|+||++.+.+++.+||||.| |..|+..|....      ...||+||..+..
T Consensus         7 ~~~~~~~~C~IC~~~~~~p~~l~CgH~f-C~~Ci~~~~~~~~~~~~~~~~CP~Cr~~~~~   65 (79)
T 2egp_A            7 GNVQEEVTCPICLELLTEPLSLDCGHSL-CRACITVSNKEAVTSMGGKSSCPVCGISYSF   65 (79)
T ss_dssp             CCCCCCCEETTTTEECSSCCCCSSSCCC-CHHHHSCCCCCCSSSCCCCCCCSSSCCCCCS
T ss_pred             hhcccCCCCcCCCcccCCeeECCCCCHH-HHHHHHHHHHhcccCCCCCCcCCCCCCcCCH
Confidence            4556678999999999999999999999 899999987642      4579999999864

>4ayc_A E3 ubiquitin-protein ligase RNF8; DNA damage, K63 chains; HET: CPQ; 1.90A {Homo sapiens} PDB: 4epo_C

Probab=99.23  E-value=3.6e-12  Score=95.73  Aligned_cols=50  Identities=22%  Similarity=0.571  Sum_probs=43.6

Q ss_pred             cccccccccccccceEEccCCCccccHhhHHHhhcCCCcccccccccccceE
Q 028047          158 DGQLCVVCLTRRRISAFNPCGHLVCCRRCAISVEREASPKCPVCRMTVRSSM  209 (214)
Q Consensus       158 ~~~~C~IC~~~~~~~~~lpCgH~~~C~~C~~~~~~~~~~~CP~CR~~i~~~~  209 (214)
                      ++..|+||++.+.+++.+||||.| |..|+..|+.. ...||+||.+|....
T Consensus        52 ~~~~C~iC~~~~~~~~~~~CgH~f-c~~Ci~~~~~~-~~~CP~Cr~~~~~~~  101 (138)
T 4ayc_A           52 NELQCIICSEYFIEAVTLNCAHSF-CSYCINEWMKR-KIECPICRKDIKSKT  101 (138)
T ss_dssp             HHSBCTTTCSBCSSEEEETTSCEE-EHHHHHHHTTT-CSBCTTTCCBCCCEE
T ss_pred             ccCCCcccCcccCCceECCCCCCc-cHHHHHHHHHc-CCcCCCCCCcCCCCC
Confidence            456799999999999999999999 99999999854 568999999997653

>3ztg_A E3 ubiquitin-protein ligase RBBP6; PACT, U-BOX, mRNA processing, mRNA splicing; NMR {Homo sapiens}

Probab=99.21  E-value=6.8e-12  Score=87.47  Aligned_cols=53  Identities=28%  Similarity=0.640  Sum_probs=45.0

Q ss_pred             cCCCccccccccccccccceEEcc-CCCccccHhhHHHhhcC-CCccccccccccc
Q 028047          153 AGDIPDGQLCVVCLTRRRISAFNP-CGHLVCCRRCAISVERE-ASPKCPVCRMTVR  206 (214)
Q Consensus       153 ~~~~~~~~~C~IC~~~~~~~~~lp-CgH~~~C~~C~~~~~~~-~~~~CP~CR~~i~  206 (214)
                      .+.+.+...|+||++.+.+++.+| |||.| |..|+..|+.. ....||+||.++.
T Consensus         7 ~~~~~~~~~C~IC~~~~~~p~~~~~CgH~f-C~~Ci~~~~~~~~~~~CP~Cr~~~~   61 (92)
T 3ztg_A            7 DDPIPDELLCLICKDIMTDAVVIPCCGNSY-CDECIRTALLESDEHTCPTCHQNDV   61 (92)
T ss_dssp             CCCCCTTTEETTTTEECSSCEECTTTCCEE-CHHHHHHHHHHCTTCCCTTTCCSSC
T ss_pred             cccCCcCCCCCCCChhhcCceECCCCCCHH-HHHHHHHHHHhcCCCcCcCCCCcCC
Confidence            345667789999999999999999 99999 99999999753 2358999999973

>1e4u_A Transcriptional repressor NOT4; gene regulation, transcriptional control; NMR {Homo sapiens} SCOP: g.44.1.1 PDB: 1ur6_B

Probab=99.20  E-value=4.8e-12  Score=85.87  Aligned_cols=56  Identities=25%  Similarity=0.571  Sum_probs=44.7

Q ss_pred             CCccccccccccccc--cceEEcc--CCCccccHhhHHHhhcCCCcccccccccccceEEe
Q 028047          155 DIPDGQLCVVCLTRR--RISAFNP--CGHLVCCRRCAISVEREASPKCPVCRMTVRSSMRI  211 (214)
Q Consensus       155 ~~~~~~~C~IC~~~~--~~~~~lp--CgH~~~C~~C~~~~~~~~~~~CP~CR~~i~~~~~i  211 (214)
                      .++++..|+||++..  .++.++|  |||.| |..|+..++......||.||+++.....+
T Consensus         7 ~~~~~~~CpICle~~~~~d~~~~p~~CGH~f-C~~Cl~~~~~~~~~~CP~CR~~~~~~~~~   66 (78)
T 1e4u_A            7 AKEDPVECPLCMEPLEIDDINFFPCTCGYQI-CRFCWHRIRTDENGLCPACRKPYPEDPAV   66 (78)
T ss_dssp             CCCCCCBCTTTCCBCCTTTTTCCSSTTSCCC-CHHHHHHHTTSSCSBCTTTCCBCSSCSSC
T ss_pred             ccccCCcCCccCccCccccccccccCCCCCc-CHHHHHHHHhcCCCCCCCCCCccCCCchh
Confidence            455677999999977  4566766  99999 99999999865567899999998765433

>2xeu_A Ring finger protein 4; transcription, zinc-finger, metal-binding; HET: SUC; 1.50A {Homo sapiens}

Probab=99.20  E-value=5e-12  Score=81.93  Aligned_cols=53  Identities=25%  Similarity=0.648  Sum_probs=44.5

Q ss_pred             ccccccccccccce-------EEccCCCccccHhhHHHhhcCCCccccccccccc--ceEEeee
Q 028047          159 GQLCVVCLTRRRIS-------AFNPCGHLVCCRRCAISVEREASPKCPVCRMTVR--SSMRIYF  213 (214)
Q Consensus       159 ~~~C~IC~~~~~~~-------~~lpCgH~~~C~~C~~~~~~~~~~~CP~CR~~i~--~~~~i~~  213 (214)
                      +..|+||++...++       +.++|||.| |..|+.+|... +..||+||+++.  .+.++|.
T Consensus         3 ~~~C~IC~~~~~~~~~~~~~~~~~~CgH~f-c~~Ci~~~~~~-~~~CP~Cr~~~~~~~~~~~~l   64 (64)
T 2xeu_A            3 MVSCPICMDGYSEIVQNGRLIVSTECGHVF-CSQCLRDSLKN-ANTCPTCRKKINHKRYHPIYI   64 (64)
T ss_dssp             CCBCTTTCCBHHHHHHTTCCEEEETTSCEE-EHHHHHHHHHH-CSBCTTTCCBCTTTCEEECCC
T ss_pred             CCCCCccChhhhCccccCCCEEeCCCCCch-hHHHHHHHHHc-CCCCCCCCccCCccceeeeeC
Confidence            45799999988775       889999999 89999999854 458999999987  4677763

>3ng2_A RNF4, snurf, ring finger protein 4; ring domain, E3 ligase, ubiquitylation, sumoylation, zinc-FI metal binding protein; 1.80A {Rattus norvegicus}

Probab=99.20  E-value=4e-12  Score=84.24  Aligned_cols=54  Identities=24%  Similarity=0.648  Sum_probs=44.5

Q ss_pred             ccccccccccccccce-------EEccCCCccccHhhHHHhhcCCCcccccccccccc--eEEee
Q 028047          157 PDGQLCVVCLTRRRIS-------AFNPCGHLVCCRRCAISVEREASPKCPVCRMTVRS--SMRIY  212 (214)
Q Consensus       157 ~~~~~C~IC~~~~~~~-------~~lpCgH~~~C~~C~~~~~~~~~~~CP~CR~~i~~--~~~i~  212 (214)
                      .++..|+||++...++       +.++|||.| |..|+..|... +..||+||.++..  +.++|
T Consensus         8 ~~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~f-c~~Ci~~~~~~-~~~CP~Cr~~~~~~~~~~~~   70 (71)
T 3ng2_A            8 SGTVSCPICMDGYSEIVQNGRLIVSTECGHVF-CSQCLRDSLKN-ANTCPTCRKKINHKRYHPIY   70 (71)
T ss_dssp             TTCCBCTTTCCBHHHHHTTTCCEEECTTSCEE-EHHHHHHHHHH-CSBCTTTCCBCCCCSCCCCC
T ss_pred             CCCCCCcccChhhhccccccCCeEeCCCCChH-hHHHHHHHHHc-CCCCCCCCCccChhheeecc
Confidence            3456899999998876       899999999 89999999854 3589999999874  45555

>2ecw_A Tripartite motif-containing protein 30; metal binding protein, structural genomics, NPPSFA; NMR {Mus musculus}

Probab=99.19  E-value=1.2e-11  Score=84.45  Aligned_cols=54  Identities=26%  Similarity=0.543  Sum_probs=45.7

Q ss_pred             cCCCccccccccccccccceEEccCCCccccHhhHHHhhcCC-----Ccccccccccccc
Q 028047          153 AGDIPDGQLCVVCLTRRRISAFNPCGHLVCCRRCAISVEREA-----SPKCPVCRMTVRS  207 (214)
Q Consensus       153 ~~~~~~~~~C~IC~~~~~~~~~lpCgH~~~C~~C~~~~~~~~-----~~~CP~CR~~i~~  207 (214)
                      .+++.+...|+||++...+++.+||||.| |..|+..|....     ...||+||..+..
T Consensus        13 ~~~~~~~~~C~IC~~~~~~p~~~~CgH~f-C~~Ci~~~~~~~~~~~~~~~CP~Cr~~~~~   71 (85)
T 2ecw_A           13 LEMIKEEVTCPICLELLKEPVSADCNHSF-CRACITLNYESNRNTDGKGNCPVCRVPYPF   71 (85)
T ss_dssp             CCCCCTTTSCTTTCSCCSSCEECTTSCCB-CHHHHHHHHHHSBCTTSCBCCTTTCCCCCT
T ss_pred             HHhCccCCCCcCCChhhCcceeCCCCCHH-HHHHHHHHHHhccCCCCCCCCCCCCCcCCH
Confidence            34556678999999999999999999999 899999987542     5679999999864

>2kiz_A E3 ubiquitin-protein ligase arkadia; ring-H2 finger, E3 ligase, Zn binding domain, metal zinc, zinc-finger, metal binding protein; NMR {Homo sapiens}

Probab=99.19  E-value=1.2e-11  Score=81.60  Aligned_cols=54  Identities=24%  Similarity=0.544  Sum_probs=42.9

Q ss_pred             CCccccccccccccc---cceEEccCCCccccHhhHHHhhcCCCcccccccccccceEE
Q 028047          155 DIPDGQLCVVCLTRR---RISAFNPCGHLVCCRRCAISVEREASPKCPVCRMTVRSSMR  210 (214)
Q Consensus       155 ~~~~~~~C~IC~~~~---~~~~~lpCgH~~~C~~C~~~~~~~~~~~CP~CR~~i~~~~~  210 (214)
                      +..+...|+||++..   ..++.+||||.| |..|+..|... ...||+||..+....+
T Consensus        10 ~~~~~~~C~IC~~~~~~~~~~~~~~C~H~f-c~~Ci~~~~~~-~~~CP~Cr~~~~~~~~   66 (69)
T 2kiz_A           10 EEDTEEKCTICLSILEEGEDVRRLPCMHLF-HQVCVDQWLIT-NKKCPICRVDIEAQLP   66 (69)
T ss_dssp             STTCCCSBTTTTBCCCSSSCEEECTTSCEE-EHHHHHHHHHH-CSBCTTTCSBSCSCCC
T ss_pred             cCCCCCCCeeCCccccCCCcEEEeCCCCHH-HHHHHHHHHHc-CCCCcCcCccccCcCC
Confidence            334566899998866   457889999999 89999999754 3479999999876543

>1chc_A Equine herpes virus-1 ring domain; viral protein; NMR {Equid herpesvirus 1} SCOP: g.44.1.1

Probab=99.19  E-value=6.2e-12  Score=82.70  Aligned_cols=53  Identities=28%  Similarity=0.640  Sum_probs=44.7

Q ss_pred             ccccccccccccce-EEccCCCccccHhhHHHhhcCCCcccccccccccceEEeee
Q 028047          159 GQLCVVCLTRRRIS-AFNPCGHLVCCRRCAISVEREASPKCPVCRMTVRSSMRIYF  213 (214)
Q Consensus       159 ~~~C~IC~~~~~~~-~~lpCgH~~~C~~C~~~~~~~~~~~CP~CR~~i~~~~~i~~  213 (214)
                      +..|+||++...++ +.+||||.| |..|+..|... +..||+||+++...++.+.
T Consensus         5 ~~~C~IC~~~~~~~~~~~~C~H~f-c~~Ci~~~~~~-~~~CP~Cr~~~~~~~~~~~   58 (68)
T 1chc_A            5 AERCPICLEDPSNYSMALPCLHAF-CYVCITRWIRQ-NPTCPLCKVPVESVVHTIE   58 (68)
T ss_dssp             CCCCSSCCSCCCSCEEETTTTEEE-STTHHHHHHHH-SCSTTTTCCCCCCEECCCC
T ss_pred             CCCCeeCCccccCCcEecCCCCee-HHHHHHHHHhC-cCcCcCCChhhHhhhhccc
Confidence            45799999999984 889999999 89999998753 3589999999988766543

>2ysj_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.17  E-value=1.5e-11  Score=79.62  Aligned_cols=48  Identities=25%  Similarity=0.697  Sum_probs=41.0

Q ss_pred             cCCCccccccccccccccceEEccCCCccccHhhHHHhhcC--CCcccccc
Q 028047          153 AGDIPDGQLCVVCLTRRRISAFNPCGHLVCCRRCAISVERE--ASPKCPVC  201 (214)
Q Consensus       153 ~~~~~~~~~C~IC~~~~~~~~~lpCgH~~~C~~C~~~~~~~--~~~~CP~C  201 (214)
                      .+.+++...|+||++...+++.+||||.| |..|+..|...  ....||+|
T Consensus        14 ~~~~~~~~~C~IC~~~~~~p~~~~CgH~f-C~~Ci~~~~~~~~~~~~CP~C   63 (63)
T 2ysj_A           14 VNKLQEEVICPICLDILQKPVTIDCGHNF-CLKCITQIGETSCGFFKCPLC   63 (63)
T ss_dssp             CCCCCCCCBCTTTCSBCSSCEECTTSSEE-CHHHHHHHHHHCSSCCCCSCC
T ss_pred             HHhCccCCCCCcCCchhCCeEEeCCCCcc-hHHHHHHHHHcCCCCCcCcCC
Confidence            34566778999999999999999999999 89999999853  34579998

>3fl2_A E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA damage, DNA repair, ring finger domain, metal binding, DNA replication; 1.75A {Homo sapiens}

Probab=99.17  E-value=7.5e-12  Score=92.18  Aligned_cols=51  Identities=24%  Similarity=0.514  Sum_probs=44.8

Q ss_pred             CccccccccccccccceEEccCCCccccHhhHHHhhcCCCcccccccccccc
Q 028047          156 IPDGQLCVVCLTRRRISAFNPCGHLVCCRRCAISVEREASPKCPVCRMTVRS  207 (214)
Q Consensus       156 ~~~~~~C~IC~~~~~~~~~lpCgH~~~C~~C~~~~~~~~~~~CP~CR~~i~~  207 (214)
                      +.+...|+||++...+++.+||||.| |..|+..|+......||+||.++..
T Consensus        49 ~~~~~~C~IC~~~~~~p~~~~CgH~f-C~~Ci~~~~~~~~~~CP~Cr~~~~~   99 (124)
T 3fl2_A           49 VEETFQCICCQELVFRPITTVCQHNV-CKDCLDRSFRAQVFSCPACRYDLGR   99 (124)
T ss_dssp             HHHHTBCTTTSSBCSSEEECTTSCEE-EHHHHHHHHHTTCCBCTTTCCBCCT
T ss_pred             CccCCCCCcCChHHcCcEEeeCCCcc-cHHHHHHHHhHCcCCCCCCCccCCC
Confidence            34567899999999999999999999 8999999986545589999999875

>3l11_A E3 ubiquitin-protein ligase RNF168; E3 ligase, ring domain, DNA damage, chromatin regulator, CHR protein, DNA repair, metal-binding, nucleus; 2.12A {Homo sapiens}

Probab=99.16  E-value=8.8e-12  Score=90.56  Aligned_cols=53  Identities=30%  Similarity=0.534  Sum_probs=45.9

Q ss_pred             CCCccccccccccccccceEEccCCCccccHhhHHHhhcCCCcccccccccccc
Q 028047          154 GDIPDGQLCVVCLTRRRISAFNPCGHLVCCRRCAISVEREASPKCPVCRMTVRS  207 (214)
Q Consensus       154 ~~~~~~~~C~IC~~~~~~~~~lpCgH~~~C~~C~~~~~~~~~~~CP~CR~~i~~  207 (214)
                      ....++..|+||++...+++.+||||.| |..|+..|.......||+||..+..
T Consensus        10 ~~~~~~~~C~iC~~~~~~p~~~~CgH~f-C~~Ci~~~~~~~~~~CP~Cr~~~~~   62 (115)
T 3l11_A           10 IPSLSECQCGICMEILVEPVTLPCNHTL-CKPCFQSTVEKASLCCPFCRRRVSS   62 (115)
T ss_dssp             CCCHHHHBCTTTCSBCSSCEECTTSCEE-CHHHHCCCCCTTTSBCTTTCCBCHH
T ss_pred             cCCCCCCCCccCCcccCceeEcCCCCHH-hHHHHHHHHhHCcCCCCCCCcccCc
Confidence            3445677999999999999999999999 8999999986556689999999864

>3lrq_A E3 ubiquitin-protein ligase TRIM37; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: MSE; 2.29A {Homo sapiens}

Probab=99.16  E-value=7.6e-12  Score=88.82  Aligned_cols=52  Identities=25%  Similarity=0.617  Sum_probs=45.0

Q ss_pred             CCccccccccccccccceEE-ccCCCccccHhhHHHhhcCCCcccccccccccc
Q 028047          155 DIPDGQLCVVCLTRRRISAF-NPCGHLVCCRRCAISVEREASPKCPVCRMTVRS  207 (214)
Q Consensus       155 ~~~~~~~C~IC~~~~~~~~~-lpCgH~~~C~~C~~~~~~~~~~~CP~CR~~i~~  207 (214)
                      .+.+...|+||++.+.+++. ++|||.| |..|+..|+......||+||.++..
T Consensus        18 ~l~~~~~C~IC~~~~~~p~~~~~CgH~F-C~~Ci~~~~~~~~~~CP~Cr~~~~~   70 (100)
T 3lrq_A           18 SIAEVFRCFICMEKLRDARLCPHCSKLC-CFSCIRRWLTEQRAQCPHCRAPLQL   70 (100)
T ss_dssp             HHHHHTBCTTTCSBCSSEEECTTTCCEE-EHHHHHHHHHHTCSBCTTTCCBCCG
T ss_pred             cCCCCCCCccCCccccCccccCCCCChh-hHHHHHHHHHHCcCCCCCCCCcCCH
Confidence            34567799999999999999 9999999 9999999986544689999999854

>1g25_A CDK-activating kinase assembly factor MAT1; ring finger (C3HC4), metal binding protein; NMR {Homo sapiens} SCOP: g.44.1.1

Probab=99.16  E-value=1.2e-11  Score=80.73  Aligned_cols=48  Identities=31%  Similarity=0.663  Sum_probs=40.1

Q ss_pred             ccccccccc-cccce----EEccCCCccccHhhHHHhhcCCCcccccccccccc
Q 028047          159 GQLCVVCLT-RRRIS----AFNPCGHLVCCRRCAISVEREASPKCPVCRMTVRS  207 (214)
Q Consensus       159 ~~~C~IC~~-~~~~~----~~lpCgH~~~C~~C~~~~~~~~~~~CP~CR~~i~~  207 (214)
                      +..|+||++ ...++    +.++|||.| |..|+.+|+......||+||.++..
T Consensus         3 ~~~C~IC~~~~~~~~~~~~~~~~CgH~f-C~~Ci~~~~~~~~~~CP~Cr~~~~~   55 (65)
T 1g25_A            3 DQGCPRCKTTKYRNPSLKLMVNVCGHTL-CESCVDLLFVRGAGNCPECGTPLRK   55 (65)
T ss_dssp             TTCCSTTTTHHHHCSSCCEEECTTCCCE-EHHHHHHHHHTTSSSCTTTCCCCSS
T ss_pred             CCcCCcCCCCccCCCccCeecCCCCCHh-HHHHHHHHHHcCCCcCCCCCCcccc
Confidence            457999999 66665    578999999 8999999975555689999999864

>2ect_A Ring finger protein 126; metal binding protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}

Probab=99.15  E-value=1.9e-11  Score=82.58  Aligned_cols=54  Identities=26%  Similarity=0.605  Sum_probs=42.6

Q ss_pred             cCCCccccccccccccccc---eEEccCCCccccHhhHHHhhcCCCcccccccccccce
Q 028047          153 AGDIPDGQLCVVCLTRRRI---SAFNPCGHLVCCRRCAISVEREASPKCPVCRMTVRSS  208 (214)
Q Consensus       153 ~~~~~~~~~C~IC~~~~~~---~~~lpCgH~~~C~~C~~~~~~~~~~~CP~CR~~i~~~  208 (214)
                      .+...+...|+||++...+   ...+||||.| |..|+..|... ...||+||+.+...
T Consensus         9 ~~~~~~~~~C~IC~~~~~~~~~~~~~~C~H~f-c~~Ci~~~~~~-~~~CP~Cr~~~~~~   65 (78)
T 2ect_A            9 EEHVGSGLECPVCKEDYALGESVRQLPCNHLF-HDSCIVPWLEQ-HDSCPVCRKSLTGQ   65 (78)
T ss_dssp             CTTSSSSCCCTTTTSCCCTTSCEEECTTSCEE-ETTTTHHHHTT-TCSCTTTCCCCCCS
T ss_pred             cccCCCCCCCeeCCccccCCCCEEEeCCCCee-cHHHHHHHHHc-CCcCcCcCCccCCc
Confidence            3344567799999887653   4678999999 89999999854 46899999998753

>2ecj_A Tripartite motif-containing protein 39; TRIM39, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.15  E-value=2.3e-11  Score=77.30  Aligned_cols=48  Identities=27%  Similarity=0.630  Sum_probs=40.5

Q ss_pred             cCCCccccccccccccccceEEccCCCccccHhhHHHhhcC--CCcccccc
Q 028047          153 AGDIPDGQLCVVCLTRRRISAFNPCGHLVCCRRCAISVERE--ASPKCPVC  201 (214)
Q Consensus       153 ~~~~~~~~~C~IC~~~~~~~~~lpCgH~~~C~~C~~~~~~~--~~~~CP~C  201 (214)
                      .+.+.+...|+||++...+++.++|||.| |..|+..|...  ....||+|
T Consensus         9 ~~~~~~~~~C~IC~~~~~~p~~~~CgH~f-C~~Ci~~~~~~~~~~~~CP~C   58 (58)
T 2ecj_A            9 LENLQVEASCSVCLEYLKEPVIIECGHNF-CKACITRWWEDLERDFPCPVC   58 (58)
T ss_dssp             SSCSCCCCBCSSSCCBCSSCCCCSSCCCC-CHHHHHHHTTSSCCSCCCSCC
T ss_pred             hhccccCCCCccCCcccCccEeCCCCCcc-CHHHHHHHHHhcCCCCCCCCC
Confidence            34556677999999999999999999999 89999999643  45679998

>2ecv_A Tripartite motif-containing protein 5; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.15  E-value=1.6e-11  Score=83.92  Aligned_cols=54  Identities=24%  Similarity=0.653  Sum_probs=45.4

Q ss_pred             cCCCccccccccccccccceEEccCCCccccHhhHHHhhcC-----CCcccccccccccc
Q 028047          153 AGDIPDGQLCVVCLTRRRISAFNPCGHLVCCRRCAISVERE-----ASPKCPVCRMTVRS  207 (214)
Q Consensus       153 ~~~~~~~~~C~IC~~~~~~~~~lpCgH~~~C~~C~~~~~~~-----~~~~CP~CR~~i~~  207 (214)
                      .+.+.+...|+||++...+++.+||||.| |..|+..|...     ....||+||..+..
T Consensus        13 ~~~~~~~~~C~IC~~~~~~p~~~~CgH~f-C~~Ci~~~~~~~~~~~~~~~CP~Cr~~~~~   71 (85)
T 2ecv_A           13 LVNVKEEVTCPICLELLTQPLSLDCGHSF-CQACLTANHKKSMLDKGESSCPVCRISYQP   71 (85)
T ss_dssp             CCCCCCCCCCTTTCSCCSSCBCCSSSCCB-CTTHHHHHHHHHHHTTSCCCCTTTCCSSCS
T ss_pred             HHHccCCCCCCCCCcccCCceeCCCCCHH-HHHHHHHHHHHhhcCCCCCcCCCCCCccCH
Confidence            34556678999999999999999999999 89999998643     24579999999874

>3t6p_A Baculoviral IAP repeat-containing protein 2; ring, BIR, CARD, UBA, apoptosis, ubiquitin ligase, SMAC/ ubiquitin, caspase, IAP family, SMAC mimetic; 1.90A {Homo sapiens} PDB: 1qbh_A 2l9m_A 3eb5_A 3eb6_A 4auq_B

Probab=99.14  E-value=3e-12  Score=109.81  Aligned_cols=54  Identities=39%  Similarity=1.006  Sum_probs=47.1

Q ss_pred             CccccccccccccccceEEccCCCccccHhhHHHhhcCCCcccccccccccceEEeeeC
Q 028047          156 IPDGQLCVVCLTRRRISAFNPCGHLVCCRRCAISVEREASPKCPVCRMTVRSSMRIYFS  214 (214)
Q Consensus       156 ~~~~~~C~IC~~~~~~~~~lpCgH~~~C~~C~~~~~~~~~~~CP~CR~~i~~~~~i~~s  214 (214)
                      +.++..|+||++.+.+++++||||.++|..|+..+.     .||+||.+|...+++|.|
T Consensus       292 l~~~~~C~IC~~~~~~~v~lpCgH~~fC~~C~~~~~-----~CP~CR~~i~~~~~i~~s  345 (345)
T 3t6p_A          292 LQEERTCKVCMDKEVSVVFIPCGHLVVCQECAPSLR-----KCPICRGIIKGTVRTFLS  345 (345)
T ss_dssp             HHTTCBCTTTSSSBCCEEEETTCCEEECTTTGGGCS-----BCTTTCCBCCEEEECC--
T ss_pred             CcCCCCCCccCCcCCceEEcCCCChhHhHHHHhcCC-----cCCCCCCCccCeEEeecC
Confidence            345679999999999999999999944999999884     899999999999999986

>2ecm_A Ring finger and CHY zinc finger domain- containing protein 1; RCHY1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2jrj_A

Probab=99.13  E-value=1.8e-11  Score=76.93  Aligned_cols=47  Identities=30%  Similarity=0.708  Sum_probs=39.9

Q ss_pred             ccccccccccccc----eEEccCCCccccHhhHHHhhcCCCcccccccccccc
Q 028047          159 GQLCVVCLTRRRI----SAFNPCGHLVCCRRCAISVEREASPKCPVCRMTVRS  207 (214)
Q Consensus       159 ~~~C~IC~~~~~~----~~~lpCgH~~~C~~C~~~~~~~~~~~CP~CR~~i~~  207 (214)
                      +..|+||++...+    ++.+||||.| |..|+..|.... ..||+||+++.+
T Consensus         5 ~~~C~IC~~~~~~~~~~~~~~~CgH~f-c~~Ci~~~~~~~-~~CP~Cr~~~~g   55 (55)
T 2ecm_A            5 SSGCPICLEDIHTSRVVAHVLPCGHLL-HRTCYEEMLKEG-YRCPLCSGPSSG   55 (55)
T ss_dssp             CCSCTTTCCCCCTTTSCEEECTTSCEE-ETTHHHHHHHHT-CCCTTSCCSSCC
T ss_pred             CCcCcccChhhcCCCcCeEecCCCCcc-cHHHHHHHHHcC-CcCCCCCCcCCC
Confidence            4579999998765    8899999999 899999998543 689999998753

>2ep4_A Ring finger protein 24; zinc binding, ubiquitin, E3 enzyme, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.13  E-value=1.5e-11  Score=82.27  Aligned_cols=57  Identities=28%  Similarity=0.600  Sum_probs=44.7

Q ss_pred             cCCCccccccccccccccc---eEEccCCCccccHhhHHHhhcCCCcccccccccccceEEe
Q 028047          153 AGDIPDGQLCVVCLTRRRI---SAFNPCGHLVCCRRCAISVEREASPKCPVCRMTVRSSMRI  211 (214)
Q Consensus       153 ~~~~~~~~~C~IC~~~~~~---~~~lpCgH~~~C~~C~~~~~~~~~~~CP~CR~~i~~~~~i  211 (214)
                      ..+..+...|+||++...+   ...+||||.| |..|+..|... ...||+||+++....++
T Consensus         9 ~~~~~~~~~C~IC~~~~~~~~~~~~~~C~H~f-~~~Ci~~~~~~-~~~CP~Cr~~~~~~~~~   68 (74)
T 2ep4_A            9 VKELNLHELCAVCLEDFKPRDELGICPCKHAF-HRKCLIKWLEV-RKVCPLCNMPVLQLAQL   68 (74)
T ss_dssp             CCCCCCSCBCSSSCCBCCSSSCEEEETTTEEE-EHHHHHHHHHH-CSBCTTTCCBCSSCCSC
T ss_pred             cccCCCCCCCcCCCcccCCCCcEEEcCCCCEe-cHHHHHHHHHc-CCcCCCcCccccccccc
Confidence            3455567799999998754   4556999999 89999999854 34899999999876543

>1iym_A EL5; ring-H2 finger, ubiquitin ligase, DNA binding protein; NMR {Oryza sativa} SCOP: g.44.1.1

Probab=99.12  E-value=3.4e-11  Score=75.75  Aligned_cols=48  Identities=38%  Similarity=0.742  Sum_probs=40.0

Q ss_pred             ccccccccccccccc---eEEcc-CCCccccHhhHHHhhcCCCccccccccccc
Q 028047          157 PDGQLCVVCLTRRRI---SAFNP-CGHLVCCRRCAISVEREASPKCPVCRMTVR  206 (214)
Q Consensus       157 ~~~~~C~IC~~~~~~---~~~lp-CgH~~~C~~C~~~~~~~~~~~CP~CR~~i~  206 (214)
                      +++..|+||++...+   ++.+| |||.| |..|+..|... +..||+||+++.
T Consensus         3 ~~~~~C~IC~~~~~~~~~~~~~~~C~H~f-~~~Ci~~w~~~-~~~CP~Cr~~~~   54 (55)
T 1iym_A            3 DDGVECAVCLAELEDGEEARFLPRCGHGF-HAECVDMWLGS-HSTCPLCRLTVV   54 (55)
T ss_dssp             CCSCCCTTTCCCCCTTSCCEECSSSCCEE-CTTHHHHTTTT-CCSCSSSCCCSC
T ss_pred             CCCCcCccCCccccCCCceEECCCCCCcc-cHHHHHHHHHc-CCcCcCCCCEeE
Confidence            345689999999877   77887 99999 89999999854 568999998864

>2l0b_A E3 ubiquitin-protein ligase praja-1; zinc finger, NESG, structural genomics, PSI-2, protein struc initiative; NMR {Homo sapiens}

Probab=99.11  E-value=3.8e-11  Score=83.72  Aligned_cols=50  Identities=24%  Similarity=0.533  Sum_probs=41.9

Q ss_pred             Cccccccccccccccc---eEEccCCCccccHhhHHHhhcCCCcccccccccccc
Q 028047          156 IPDGQLCVVCLTRRRI---SAFNPCGHLVCCRRCAISVEREASPKCPVCRMTVRS  207 (214)
Q Consensus       156 ~~~~~~C~IC~~~~~~---~~~lpCgH~~~C~~C~~~~~~~~~~~CP~CR~~i~~  207 (214)
                      ..++..|+||++...+   ++.+||||.| |..|+..|... +..||+||..+..
T Consensus        37 ~~~~~~C~IC~~~~~~~~~~~~l~C~H~F-h~~Ci~~wl~~-~~~CP~Cr~~~~~   89 (91)
T 2l0b_A           37 VGQEMCCPICCSEYVKGDVATELPCHHYF-HKPCVSIWLQK-SGTCPVCRCMFPP   89 (91)
T ss_dssp             SSSCSEETTTTEECCTTCEEEEETTTEEE-EHHHHHHHHTT-TCBCTTTCCBSSC
T ss_pred             cCCCCCCcccChhhcCCCcEEecCCCChH-HHHHHHHHHHc-CCcCcCcCccCCC
Confidence            3456689999998776   8889999999 89999999854 4589999998864

>1z6u_A NP95-like ring finger protein isoform B; structural genomics consortium, ligase, ubiquitin-protein ligase, cell cycle regulation, SGC; 2.10A {Homo sapiens}

Probab=99.08  E-value=3.3e-11  Score=91.73  Aligned_cols=52  Identities=23%  Similarity=0.530  Sum_probs=44.9

Q ss_pred             CccccccccccccccceEEccCCCccccHhhHHHhhcCCCcccccccccccce
Q 028047          156 IPDGQLCVVCLTRRRISAFNPCGHLVCCRRCAISVEREASPKCPVCRMTVRSS  208 (214)
Q Consensus       156 ~~~~~~C~IC~~~~~~~~~lpCgH~~~C~~C~~~~~~~~~~~CP~CR~~i~~~  208 (214)
                      +.+...|+||++.+.+++.+||||.| |..|+..|.......||+||.++...
T Consensus        75 l~~~~~C~IC~~~~~~pv~~~CgH~f-C~~Ci~~~~~~~~~~CP~Cr~~~~~~  126 (150)
T 1z6u_A           75 LEQSFMCVCCQELVYQPVTTECFHNV-CKDCLQRSFKAQVFSCPACRHDLGQN  126 (150)
T ss_dssp             HHHHTBCTTTSSBCSSEEECTTSCEE-EHHHHHHHHHTTCCBCTTTCCBCCTT
T ss_pred             CccCCEeecCChhhcCCEEcCCCCch-hHHHHHHHHHhCCCcCCCCCccCCCC
Confidence            34567899999999999999999999 99999999875445899999998753

>1x4j_A Ring finger protein 38; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.07  E-value=4.3e-11  Score=80.25  Aligned_cols=49  Identities=27%  Similarity=0.644  Sum_probs=40.5

Q ss_pred             ccccccccccccccce---EEccCCCccccHhhHHHhhcCCCcccccccccccc
Q 028047          157 PDGQLCVVCLTRRRIS---AFNPCGHLVCCRRCAISVEREASPKCPVCRMTVRS  207 (214)
Q Consensus       157 ~~~~~C~IC~~~~~~~---~~lpCgH~~~C~~C~~~~~~~~~~~CP~CR~~i~~  207 (214)
                      .+...|+||++...+.   ..+||||.| |..|+..|... +..||+||+.+..
T Consensus        21 ~~~~~C~IC~~~~~~~~~~~~l~C~H~f-h~~Ci~~w~~~-~~~CP~Cr~~~~~   72 (75)
T 1x4j_A           21 SEQTLCVVCMCDFESRQLLRVLPCNHEF-HAKCVDKWLKA-NRTCPICRADSGP   72 (75)
T ss_dssp             SSCCEETTTTEECCBTCEEEEETTTEEE-ETTHHHHHHHH-CSSCTTTCCCCCC
T ss_pred             CCCCCCeECCcccCCCCeEEEECCCCHh-HHHHHHHHHHc-CCcCcCcCCcCCC
Confidence            4566899999887654   788999999 89999999754 4589999998864

>3hct_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 3hcu_A 2eci_A 2jmd_A

Probab=99.06  E-value=5.7e-11  Score=86.73  Aligned_cols=53  Identities=32%  Similarity=0.656  Sum_probs=46.0

Q ss_pred             CCCccccccccccccccceEEccCCCccccHhhHHHhhcCCCcccccccccccc
Q 028047          154 GDIPDGQLCVVCLTRRRISAFNPCGHLVCCRRCAISVEREASPKCPVCRMTVRS  207 (214)
Q Consensus       154 ~~~~~~~~C~IC~~~~~~~~~lpCgH~~~C~~C~~~~~~~~~~~CP~CR~~i~~  207 (214)
                      +.+++...|+||++...+++.++|||.| |..|+..|.......||+||.++..
T Consensus        13 ~~~~~~~~C~IC~~~~~~p~~~~CgH~f-C~~Ci~~~~~~~~~~CP~Cr~~~~~   65 (118)
T 3hct_A           13 PPLESKYECPICLMALREAVQTPCGHRF-CKACIIKSIRDAGHKCPVDNEILLE   65 (118)
T ss_dssp             SCCCGGGBCTTTCSBCSSEEECTTSCEE-EHHHHHHHHHHHCSBCTTTCCBCCG
T ss_pred             cCCCCCCCCCcCChhhcCeEECCcCChh-hHHHHHHHHhhCCCCCCCCCCCcCH
Confidence            4566778999999999999999999999 9999999986444489999999875

>2kr4_A Ubiquitin conjugation factor E4 B; U-BOX, UFD2, ring, E3 ligase, UBL conjugation pathway; NMR {Mus musculus}

Probab=99.06  E-value=1e-10  Score=80.53  Aligned_cols=53  Identities=21%  Similarity=0.130  Sum_probs=46.5

Q ss_pred             cCCCccccccccccccccceEEccCCCccccHhhHHHhhcCCCcccccccccccc
Q 028047          153 AGDIPDGQLCVVCLTRRRISAFNPCGHLVCCRRCAISVEREASPKCPVCRMTVRS  207 (214)
Q Consensus       153 ~~~~~~~~~C~IC~~~~~~~~~lpCgH~~~C~~C~~~~~~~~~~~CP~CR~~i~~  207 (214)
                      ...+++...|+||++.+++++.++|||.| |..|+..|+.. ...||+||.++..
T Consensus         8 ~~~~p~~~~CpI~~~~m~dPV~~~cGhtf-~r~~I~~~l~~-~~~cP~~~~~l~~   60 (85)
T 2kr4_A            8 YSDAPDEFRDPLMDTLMTDPVRLPSGTVM-DRSIILRHLLN-SPTDPFNRQMLTE   60 (85)
T ss_dssp             CTTCCTTTBCTTTCSBCSSEEECTTSCEE-EHHHHHHHHHH-CSBCTTTCCBCCG
T ss_pred             hhcCchheECcccCchhcCCeECCCCCEE-CHHHHHHHHhc-CCCCCCCcCCCCh
Confidence            44567788999999999999999999999 99999999864 4689999998764

>1wgm_A Ubiquitin conjugation factor E4A; ubiquitinating enzyme, KIAA0126, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.2

Probab=99.06  E-value=1.7e-10  Score=81.57  Aligned_cols=53  Identities=17%  Similarity=-0.018  Sum_probs=46.7

Q ss_pred             cCCCccccccccccccccceEEccCC-CccccHhhHHHhhcCCCcccccccccccc
Q 028047          153 AGDIPDGQLCVVCLTRRRISAFNPCG-HLVCCRRCAISVEREASPKCPVCRMTVRS  207 (214)
Q Consensus       153 ~~~~~~~~~C~IC~~~~~~~~~lpCg-H~~~C~~C~~~~~~~~~~~CP~CR~~i~~  207 (214)
                      ...+++...|+||++.+++++.++|| |.| |+.|+..|+.. ...||+||.++..
T Consensus        16 ~~~~p~~~~CpI~~~~m~dPV~~~cG~htf-~r~cI~~~l~~-~~~cP~~~~~l~~   69 (98)
T 1wgm_A           16 YADACDEFLDPIMSTLMCDPVVLPSSRVTV-DRSTIARHLLS-DQTDPFNRSPLTM   69 (98)
T ss_dssp             CCSCCTTTBCTTTCSBCSSEEECTTTCCEE-EHHHHHHHTTT-SCBCTTTCSBCCT
T ss_pred             hhcCcHhcCCcCccccccCCeECCCCCeEE-CHHHHHHHHHh-CCCCCCCCCCCCh
Confidence            44567788999999999999999999 999 89999999965 5689999998764

>2ckl_B Ubiquitin ligase protein RING2; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_C 2h0d_B

Probab=99.05  E-value=5.9e-11  Score=91.55  Aligned_cols=53  Identities=26%  Similarity=0.648  Sum_probs=45.0

Q ss_pred             CCCccccccccccccccceEEc-cCCCccccHhhHHHhhcCCCcccccccccccc
Q 028047          154 GDIPDGQLCVVCLTRRRISAFN-PCGHLVCCRRCAISVEREASPKCPVCRMTVRS  207 (214)
Q Consensus       154 ~~~~~~~~C~IC~~~~~~~~~l-pCgH~~~C~~C~~~~~~~~~~~CP~CR~~i~~  207 (214)
                      ..+.+...|+||++...+++.+ ||||.| |..|+..|.......||+||.++..
T Consensus        49 ~~~~~~~~C~IC~~~~~~p~~~~~CgH~f-C~~Ci~~~~~~~~~~CP~Cr~~~~~  102 (165)
T 2ckl_B           49 RSLHSELMCPICLDMLKNTMTTKECLHRF-CADCIITALRSGNKECPTCRKKLVS  102 (165)
T ss_dssp             -CCHHHHBCTTTSSBCSSEEEETTTCCEE-EHHHHHHHHHTTCCBCTTTCCBCCS
T ss_pred             hhCCCCCCCcccChHhhCcCEeCCCCChh-HHHHHHHHHHhCcCCCCCCCCcCCC
Confidence            3455677999999999999987 999999 9999999987556689999999853

>2kre_A Ubiquitin conjugation factor E4 B; U-box domain, E3 ubiquitin ligase, E4 polyubiquitin chain EL factor, phosphoprotein, UBL conjugation pathway; NMR {Homo sapiens} PDB: 3l1x_A 3l1z_B

Probab=99.05  E-value=1.6e-10  Score=81.99  Aligned_cols=54  Identities=22%  Similarity=0.135  Sum_probs=47.2

Q ss_pred             ccCCCccccccccccccccceEEccCCCccccHhhHHHhhcCCCcccccccccccc
Q 028047          152 VAGDIPDGQLCVVCLTRRRISAFNPCGHLVCCRRCAISVEREASPKCPVCRMTVRS  207 (214)
Q Consensus       152 ~~~~~~~~~~C~IC~~~~~~~~~lpCgH~~~C~~C~~~~~~~~~~~CP~CR~~i~~  207 (214)
                      ....+++...|+||++.+++++.+||||.| |..|+..|+.. ...||+||.++..
T Consensus        22 ~~~~~p~~~~CpI~~~~m~dPV~~~cGhtf-~r~~I~~~l~~-~~~cP~~~~~l~~   75 (100)
T 2kre_A           22 DYSDAPDEFRDPLMDTLMTDPVRLPSGTIM-DRSIILRHLLN-SPTDPFNRQTLTE   75 (100)
T ss_dssp             SCSSCSTTTBCTTTCSBCSSEEEETTTEEE-EHHHHHHHTTS-CSBCSSSCCBCCT
T ss_pred             hhccCcHhhCCcCccCcccCCeECCCCCEE-chHHHHHHHHc-CCCCCCCCCCCCh
Confidence            344567788999999999999999999999 99999999964 5689999998764

>2y43_A E3 ubiquitin-protein ligase RAD18; DNA repair, metal-binding, translesion synthesis, UB conjugation pathway; 1.80A {Homo sapiens}

Probab=99.04  E-value=4.1e-11  Score=84.68  Aligned_cols=51  Identities=27%  Similarity=0.559  Sum_probs=43.8

Q ss_pred             CCccccccccccccccceEEc-cCCCccccHhhHHHhhcCCCcccccccccccc
Q 028047          155 DIPDGQLCVVCLTRRRISAFN-PCGHLVCCRRCAISVEREASPKCPVCRMTVRS  207 (214)
Q Consensus       155 ~~~~~~~C~IC~~~~~~~~~l-pCgH~~~C~~C~~~~~~~~~~~CP~CR~~i~~  207 (214)
                      .+.+...|+||++...+++.+ +|||.| |..|+..|... ...||+||..+..
T Consensus        18 ~~~~~~~C~IC~~~~~~p~~~~~CgH~f-C~~Ci~~~~~~-~~~CP~Cr~~~~~   69 (99)
T 2y43_A           18 TIDDLLRCGICFEYFNIAMIIPQCSHNY-CSLCIRKFLSY-KTQCPTCCVTVTE   69 (99)
T ss_dssp             HHHHHTBCTTTCSBCSSEEECTTTCCEE-EHHHHHHHHTT-CCBCTTTCCBCCG
T ss_pred             hCCCCCCcccCChhhCCcCEECCCCCHh-hHHHHHHHHHC-CCCCCCCCCcCCh
Confidence            344567999999999999988 899999 89999999853 4689999998874

>1bor_A Transcription factor PML; proto-oncogene, nuclear bodies (PODS), leukemia, transcription regulation; NMR {Homo sapiens} SCOP: g.44.1.1

Probab=99.04  E-value=1.9e-11  Score=77.58  Aligned_cols=45  Identities=22%  Similarity=0.586  Sum_probs=38.9

Q ss_pred             cccccccccccccceEEccCCCccccHhhHHHhhcCCCcccccccccccc
Q 028047          158 DGQLCVVCLTRRRISAFNPCGHLVCCRRCAISVEREASPKCPVCRMTVRS  207 (214)
Q Consensus       158 ~~~~C~IC~~~~~~~~~lpCgH~~~C~~C~~~~~~~~~~~CP~CR~~i~~  207 (214)
                      +...|+||++.+.+++.+||||.| |..|+..+    ...||+||+.+..
T Consensus         5 ~~~~C~IC~~~~~~p~~l~CgH~f-C~~Ci~~~----~~~CP~Cr~~~~~   49 (56)
T 1bor_A            5 QFLRCQQCQAEAKCPKLLPCLHTL-CSGCLEAS----GMQCPICQAPWPL   49 (56)
T ss_dssp             CCSSCSSSCSSCBCCSCSTTSCCS-BTTTCSSS----SSSCSSCCSSSSC
T ss_pred             cCCCceEeCCccCCeEEcCCCCcc-cHHHHccC----CCCCCcCCcEeec
Confidence            456899999999999999999999 89998773    3479999998763

>2ckl_A Polycomb group ring finger protein 4; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_B 2h0d_A

Probab=99.02  E-value=1.2e-10  Score=83.61  Aligned_cols=51  Identities=24%  Similarity=0.557  Sum_probs=44.3

Q ss_pred             CCccccccccccccccceEEc-cCCCccccHhhHHHhhcCCCcccccccccccc
Q 028047          155 DIPDGQLCVVCLTRRRISAFN-PCGHLVCCRRCAISVEREASPKCPVCRMTVRS  207 (214)
Q Consensus       155 ~~~~~~~C~IC~~~~~~~~~l-pCgH~~~C~~C~~~~~~~~~~~CP~CR~~i~~  207 (214)
                      .+.+...|+||++...+++.+ +|||.| |..|+..|... ...||+||..+..
T Consensus        11 ~~~~~~~C~IC~~~~~~p~~~~~CgH~f-C~~Ci~~~~~~-~~~CP~Cr~~~~~   62 (108)
T 2ckl_A           11 ELNPHLMCVLCGGYFIDATTIIECLHSF-CKTCIVRYLET-SKYCPICDVQVHK   62 (108)
T ss_dssp             HHGGGTBCTTTSSBCSSEEEETTTCCEE-EHHHHHHHHTS-CSBCTTTCCBSCS
T ss_pred             ccCCcCCCccCChHHhCcCEeCCCCChh-hHHHHHHHHHh-CCcCcCCCccccc
Confidence            345677999999999999997 999999 89999999854 4689999999875

>1rmd_A RAG1; V(D)J recombination, antibody, MAD, ring finger, zinc binuclear cluster, zinc finger, DNA-binding protein; 2.10A {Mus musculus} SCOP: g.37.1.1 g.44.1.1

Probab=99.02  E-value=5e-11  Score=86.65  Aligned_cols=51  Identities=24%  Similarity=0.531  Sum_probs=44.6

Q ss_pred             CccccccccccccccceEEccCCCccccHhhHHHhhcCCCcccccccccccc
Q 028047          156 IPDGQLCVVCLTRRRISAFNPCGHLVCCRRCAISVEREASPKCPVCRMTVRS  207 (214)
Q Consensus       156 ~~~~~~C~IC~~~~~~~~~lpCgH~~~C~~C~~~~~~~~~~~CP~CR~~i~~  207 (214)
                      +.+...|+||++...+++.++|||.| |..|+..|.......||+||.++..
T Consensus        20 ~~~~~~C~IC~~~~~~p~~~~CgH~f-C~~Ci~~~~~~~~~~CP~Cr~~~~~   70 (116)
T 1rmd_A           20 FVKSISCQICEHILADPVETSCKHLF-CRICILRCLKVMGSYCPSCRYPCFP   70 (116)
T ss_dssp             HHHHTBCTTTCSBCSSEEECTTSCEE-EHHHHHHHHHHTCSBCTTTCCBCCG
T ss_pred             ccCCCCCCCCCcHhcCcEEcCCCCcc-cHHHHHHHHhHCcCcCCCCCCCCCH
Confidence            44567999999999999999999999 8999999986545689999999864

>2y1n_A E3 ubiquitin-protein ligase; ligase-transferase complex, ubiquitin ring E3 ligase; HET: PTR; 2.00A {Homo sapiens} PDB: 2y1m_A* 4a4c_A* 4a4b_A* 1fbv_A* 3vgo_A 4a49_A* 2k4d_A 2ldr_A*

Probab=99.02  E-value=1e-10  Score=101.19  Aligned_cols=53  Identities=32%  Similarity=0.787  Sum_probs=46.3

Q ss_pred             ccccccccccccceEEccCCCccccHhhHHHhhcCCCcccccccccccceEEee
Q 028047          159 GQLCVVCLTRRRISAFNPCGHLVCCRRCAISVEREASPKCPVCRMTVRSSMRIY  212 (214)
Q Consensus       159 ~~~C~IC~~~~~~~~~lpCgH~~~C~~C~~~~~~~~~~~CP~CR~~i~~~~~i~  212 (214)
                      ...|+||++...+++.+||||.| |..|+..|.......||+||+++.....+.
T Consensus       332 ~~~C~ICle~~~~pv~lpCGH~F-C~~Ci~~wl~~~~~~CP~CR~~i~~~~~i~  384 (389)
T 2y1n_A          332 FQLCKICAENDKDVKIEPCGHLM-CTSCLTSWQESEGQGCPFCRCEIKGTEPIV  384 (389)
T ss_dssp             SSBCTTTSSSBCCEEEETTCCEE-CHHHHHHHHHHTCSBCTTTCCBCCEEEECS
T ss_pred             CCCCCccCcCCCCeEEeCCCChh-hHHHHHHHHhcCCCCCCCCCCccCCceeEe
Confidence            36899999999999999999999 999999997534568999999999876654

>3knv_A TNF receptor-associated factor 2; cross-brace, alternative splicing, apoptosis, cytoplasm, metal-binding, UBL conjugation, zinc, zinc-finger; 1.90A {Homo sapiens}

Probab=99.01  E-value=9.5e-11  Score=88.30  Aligned_cols=50  Identities=24%  Similarity=0.509  Sum_probs=44.3

Q ss_pred             CCccccccccccccccceEEccCCCccccHhhHHHhhcCCCcccccccccc
Q 028047          155 DIPDGQLCVVCLTRRRISAFNPCGHLVCCRRCAISVEREASPKCPVCRMTV  205 (214)
Q Consensus       155 ~~~~~~~C~IC~~~~~~~~~lpCgH~~~C~~C~~~~~~~~~~~CP~CR~~i  205 (214)
                      .+++...|+||++...+++.++|||.| |..|+..|+......||+||.++
T Consensus        27 ~l~~~~~C~IC~~~~~~pv~~~CgH~F-C~~Ci~~~~~~~~~~CP~Cr~~~   76 (141)
T 3knv_A           27 KLEAKYLCSACRNVLRRPFQAQCGHRY-CSFCLASILSSGPQNCAACVHEG   76 (141)
T ss_dssp             GCCGGGBCTTTCSBCSSEEECTTSCEE-EHHHHHHHGGGSCEECHHHHHTT
T ss_pred             cCCcCcCCCCCChhhcCcEECCCCCcc-CHHHHHHHHhcCCCCCCCCCCcc
Confidence            456778999999999999999999999 99999999865556899999975

>1jm7_A BRCA1, breast cancer type 1 susceptibility protein; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1

Probab=98.97  E-value=8.1e-11  Score=84.77  Aligned_cols=50  Identities=20%  Similarity=0.644  Sum_probs=42.3

Q ss_pred             ccccccccccccccceEEccCCCccccHhhHHHhhcCC--Ccccccccccccc
Q 028047          157 PDGQLCVVCLTRRRISAFNPCGHLVCCRRCAISVEREA--SPKCPVCRMTVRS  207 (214)
Q Consensus       157 ~~~~~C~IC~~~~~~~~~lpCgH~~~C~~C~~~~~~~~--~~~CP~CR~~i~~  207 (214)
                      .+...|+||++...+++.+||||.| |..|+..|....  ...||+||.++..
T Consensus        19 ~~~~~C~IC~~~~~~p~~~~CgH~f-C~~Ci~~~~~~~~~~~~CP~Cr~~~~~   70 (112)
T 1jm7_A           19 QKILECPICLELIKEPVSTKCDHIF-CKFCMLKLLNQKKGPSQCPLCKNDITK   70 (112)
T ss_dssp             HHHTSCSSSCCCCSSCCBCTTSCCC-CSHHHHHHHHSSSSSCCCTTTSCCCCT
T ss_pred             cCCCCCcccChhhcCeEECCCCCHH-HHHHHHHHHHhCCCCCCCcCCCCcCCH
Confidence            3456899999999999999999999 899999998632  2479999998864

>1v87_A Deltex protein 2; ring-H2 domain, zinc-binding domain, notch signaling, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.44.1.1

Probab=98.95  E-value=3.1e-10  Score=82.06  Aligned_cols=48  Identities=19%  Similarity=0.625  Sum_probs=38.5

Q ss_pred             ccccccccccccce------------------EEccCCCccccHhhHHHhhc----CCCcccccccccccc
Q 028047          159 GQLCVVCLTRRRIS------------------AFNPCGHLVCCRRCAISVER----EASPKCPVCRMTVRS  207 (214)
Q Consensus       159 ~~~C~IC~~~~~~~------------------~~lpCgH~~~C~~C~~~~~~----~~~~~CP~CR~~i~~  207 (214)
                      +..|+||++...++                  ..++|||.| |..|+..|..    .....||+||+.+..
T Consensus        25 ~~~C~ICl~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~H~F-h~~Ci~~wl~~~~~~~~~~CP~CR~~~~~   94 (114)
T 1v87_A           25 EEDCIICMEKLAVASGYSDMTDSKALGPMVVGRLTKCSHAF-HLLCLLAMYCNGNKDGSLQCPSCKTIYGE   94 (114)
T ss_dssp             SCEETTTTEETTSCCSTTTTCCCSSSCSSCCEEESSSCCEE-CHHHHHHHHHHTCCSSCCBCTTTCCBSSS
T ss_pred             CCcCccCChhhcCcccccccccccccCcccceecCCCCCcc-cHHHHHHHHHcccCCCCCcCCCCCCccCC
Confidence            34899999987543                  388999999 8999999984    234589999998764

>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}

Probab=98.89  E-value=7.5e-10  Score=81.64  Aligned_cols=48  Identities=23%  Similarity=0.672  Sum_probs=41.8

Q ss_pred             cccccccccccccce-------EEccCCCccccHhhHHHhhcCCCcccccccccccc
Q 028047          158 DGQLCVVCLTRRRIS-------AFNPCGHLVCCRRCAISVEREASPKCPVCRMTVRS  207 (214)
Q Consensus       158 ~~~~C~IC~~~~~~~-------~~lpCgH~~~C~~C~~~~~~~~~~~CP~CR~~i~~  207 (214)
                      +...|+||++...++       +.++|||.| |..|+.+|... +..||+||+.+..
T Consensus         6 ~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~f-c~~Ci~~~~~~-~~~CP~Cr~~~~~   60 (133)
T 4ap4_A            6 GTVSCPICMDGYSEIVQNGRLIVSTECGHVF-CSQCLRDSLKN-ANTCPTCRKKINH   60 (133)
T ss_dssp             CSCBCTTTCCBHHHHHHTTCCEEEETTCCEE-EHHHHHHHHTT-CSBCTTTCCBCTT
T ss_pred             CCCCCcccChhhhCccccccCeEecCCCChh-hHHHHHHHHHh-CCCCCCCCCcCcc
Confidence            456899999999887       999999999 89999999854 4589999999874

>2ecl_A Ring-box protein 2; RNF7, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.87  E-value=1e-09  Score=74.71  Aligned_cols=47  Identities=17%  Similarity=0.428  Sum_probs=36.3

Q ss_pred             ccccccccccccc--------------eEEc-cCCCccccHhhHHHhhcCCCcccccccccccc
Q 028047          159 GQLCVVCLTRRRI--------------SAFN-PCGHLVCCRRCAISVEREASPKCPVCRMTVRS  207 (214)
Q Consensus       159 ~~~C~IC~~~~~~--------------~~~l-pCgH~~~C~~C~~~~~~~~~~~CP~CR~~i~~  207 (214)
                      +..|+||++...+              ++.+ +|||.| +..|+.+|... +..||+||+++..
T Consensus        15 ~~~C~IC~~~~~~~C~iC~~~~~~~~~~~~~~~C~H~F-H~~Ci~~Wl~~-~~~CP~CR~~~~~   76 (81)
T 2ecl_A           15 CDTCAICRVQVMDACLRCQAENKQEDCVVVWGECNHSF-HNCCMSLWVKQ-NNRCPLCQQDWVV   76 (81)
T ss_dssp             CSCBTTTTBCTTSCCTTHHHHTCTTTCCEEEETTSCEE-EHHHHHHHTTT-CCBCTTTCCBCCE
T ss_pred             CCCCcccChhhhccCcccccccCCCceEEEeCCCCCcc-ChHHHHHHHHh-CCCCCCcCCCcch
Confidence            4568888887754              4444 599999 69999999854 4589999998753

>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2

Probab=98.87  E-value=1e-09  Score=90.84  Aligned_cols=52  Identities=21%  Similarity=0.196  Sum_probs=45.1

Q ss_pred             CCccccccccccccccceEEccCCCccccHhhHHHhhcCCCcccccccccccc
Q 028047          155 DIPDGQLCVVCLTRRRISAFNPCGHLVCCRRCAISVEREASPKCPVCRMTVRS  207 (214)
Q Consensus       155 ~~~~~~~C~IC~~~~~~~~~lpCgH~~~C~~C~~~~~~~~~~~CP~CR~~i~~  207 (214)
                      ..++...|+||++.+.+|+.+||||.| |..|+..|+......||+||.++..
T Consensus       204 ~~~~~~~c~i~~~~~~dPv~~~~gh~f-~~~~i~~~~~~~~~~cP~~~~~~~~  255 (281)
T 2c2l_A          204 DIPDYLCGKISFELMREPCITPSGITY-DRKDIEEHLQRVGHFNPVTRSPLTQ  255 (281)
T ss_dssp             CCCSTTBCTTTCSBCSSEEECSSCCEE-ETTHHHHHHHHTCSSCTTTCCCCCG
T ss_pred             CCCcccCCcCcCCHhcCCeECCCCCEE-CHHHHHHHHHHCCCCCcCCCCCCch
Confidence            445677999999999999999999999 9999999986544459999999864

>1jm7_B BARD1, BRCA1-associated ring domain protein 1; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1

Probab=98.86  E-value=2.6e-10  Score=83.09  Aligned_cols=48  Identities=23%  Similarity=0.508  Sum_probs=42.3

Q ss_pred             CCccccccccccccccceEEc-cCCCccccHhhHHHhhcCCCccccccccccc
Q 028047          155 DIPDGQLCVVCLTRRRISAFN-PCGHLVCCRRCAISVEREASPKCPVCRMTVR  206 (214)
Q Consensus       155 ~~~~~~~C~IC~~~~~~~~~l-pCgH~~~C~~C~~~~~~~~~~~CP~CR~~i~  206 (214)
                      .+.+...|+||++.+.+++.+ +|||.| |..|+..|+.   ..||+||.++.
T Consensus        18 ~l~~~~~C~IC~~~~~~pv~~~~CgH~f-C~~Ci~~~~~---~~CP~Cr~~~~   66 (117)
T 1jm7_B           18 RLEKLLRCSRCTNILREPVCLGGCEHIF-CSNCVSDCIG---TGCPVCYTPAW   66 (117)
T ss_dssp             HHHHTTSCSSSCSCCSSCBCCCSSSCCB-CTTTGGGGTT---TBCSSSCCBCS
T ss_pred             hchhCCCCCCCChHhhCccEeCCCCCHH-HHHHHHHHhc---CCCcCCCCcCc
Confidence            345567899999999999999 999999 8999999984   58999999985

>3hcs_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.20A {Homo sapiens}

Probab=98.85  E-value=1e-09  Score=84.89  Aligned_cols=53  Identities=32%  Similarity=0.656  Sum_probs=46.2

Q ss_pred             CCCccccccccccccccceEEccCCCccccHhhHHHhhcCCCcccccccccccc
Q 028047          154 GDIPDGQLCVVCLTRRRISAFNPCGHLVCCRRCAISVEREASPKCPVCRMTVRS  207 (214)
Q Consensus       154 ~~~~~~~~C~IC~~~~~~~~~lpCgH~~~C~~C~~~~~~~~~~~CP~CR~~i~~  207 (214)
                      +.+++...|+||++...+++.++|||.| |..|+..|.......||+||.++..
T Consensus        13 ~~~~~~~~C~IC~~~~~~pv~~~CgH~f-C~~Ci~~~~~~~~~~CP~Cr~~~~~   65 (170)
T 3hcs_A           13 PPLESKYECPICLMALREAVQTPCGHRF-CKACIIKSIRDAGHKCPVDNEILLE   65 (170)
T ss_dssp             SCCCGGGBCTTTCSBCSSEEECTTSCEE-EHHHHHHHHHHHCSBCTTTCCBCCG
T ss_pred             cCCCCCCCCCCCChhhcCcEECCCCCHH-HHHHHHHHHHhCCCCCCCCccCcch
Confidence            4566788999999999999999999999 9999999986434589999999875

>2f42_A STIP1 homology and U-box containing protein 1; chaperone; 2.50A {Danio rerio} PDB: 2c2v_S 2oxq_C

Probab=98.81  E-value=2.6e-09  Score=83.27  Aligned_cols=54  Identities=19%  Similarity=0.159  Sum_probs=46.6

Q ss_pred             cCCCccccccccccccccceEEccCCCccccHhhHHHhhcCCCcccccccccccc
Q 028047          153 AGDIPDGQLCVVCLTRRRISAFNPCGHLVCCRRCAISVEREASPKCPVCRMTVRS  207 (214)
Q Consensus       153 ~~~~~~~~~C~IC~~~~~~~~~lpCgH~~~C~~C~~~~~~~~~~~CP~CR~~i~~  207 (214)
                      ...+++...|+||++.+.+|+.+||||.| |..|+..|+......||+||.++..
T Consensus       100 ~~~ip~~f~CPI~~elm~DPV~~~~Ghtf-er~~I~~~l~~~~~tcP~t~~~l~~  153 (179)
T 2f42_A          100 KREIPDYLCGKISFELMREPCITPSGITY-DRKDIEEHLQRVGHFDPVTRSPLTQ  153 (179)
T ss_dssp             CCCCCGGGBCTTTCSBCSSEEECTTSCEE-EHHHHHHHHHHTCSBCTTTCCBCCG
T ss_pred             ccCCcHhhcccCccccCCCCeECCCCCEE-CHHHHHHHHHhCCCCCCCCcCCCCh
Confidence            34567788999999999999999999999 9999999986533469999998764

>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}

Probab=98.78  E-value=2.2e-09  Score=79.14  Aligned_cols=55  Identities=24%  Similarity=0.642  Sum_probs=45.4

Q ss_pred             ccccccccccccccce-------EEccCCCccccHhhHHHhhcCCCccccccccccc--ceEEeee
Q 028047          157 PDGQLCVVCLTRRRIS-------AFNPCGHLVCCRRCAISVEREASPKCPVCRMTVR--SSMRIYF  213 (214)
Q Consensus       157 ~~~~~C~IC~~~~~~~-------~~lpCgH~~~C~~C~~~~~~~~~~~CP~CR~~i~--~~~~i~~  213 (214)
                      ++...|+||++...++       +.++|||.| |..|+.+|... ...||+||.++.  .+.++|.
T Consensus        70 ~~~~~C~iC~~~~~~~~~~~~~~~~~~CgH~f-c~~Ci~~~~~~-~~~CP~Cr~~~~~~~~~~~~~  133 (133)
T 4ap4_A           70 SGTVSCPICMDGYSEIVQNGRLIVSTECGHVF-CSQCLRDSLKN-ANTCPTCRKKINHKRYHPIYI  133 (133)
T ss_dssp             SSSCBCTTTCCBHHHHHHTTCCEEEETTSBEE-EHHHHHHHHHH-CSBCTTTCCBCCGGGEEEECC
T ss_pred             CCCCCCCCCCCccccccccCcceEeCCCCChh-hHHHHHHHHHc-CCCCCCCCCcCChhcceeeeC
Confidence            3456899999988775       889999999 89999999854 458999999987  4567763

>2yu4_A E3 SUMO-protein ligase NSE2; SP-ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.74  E-value=4.7e-09  Score=73.48  Aligned_cols=47  Identities=21%  Similarity=0.441  Sum_probs=40.2

Q ss_pred             ccccccccccccccceEEcc-CCCccccHhhHHHhhcCC-----Cccccc--cccc
Q 028047          157 PDGQLCVVCLTRRRISAFNP-CGHLVCCRRCAISVEREA-----SPKCPV--CRMT  204 (214)
Q Consensus       157 ~~~~~C~IC~~~~~~~~~lp-CgH~~~C~~C~~~~~~~~-----~~~CP~--CR~~  204 (214)
                      .+...|+||++.+.+++.+| |||.| |..|+..|+...     ...||+  |+..
T Consensus         5 ~~~~~CPI~~~~~~dPV~~~~cGh~f-~r~cI~~~l~~~~~~~~~~~CP~tgc~~~   59 (94)
T 2yu4_A            5 SSGFTCPITKEEMKKPVKNKVCGHTY-EEDAIVRMIESRQKRKKKAYCPQIGCSHT   59 (94)
T ss_dssp             SSCCBCTTTCSBCSSEEEESSSCCEE-EHHHHHHHHHHHHTTTCCBCCCSTTCCCC
T ss_pred             CcEeECcCcCchhcCCEEcCCCCCee-cHHHHHHHHHHccCcCCCCCCCcCcCccc
Confidence            45678999999999999996 99999 999999998642     347999  9855

>3dpl_R Ring-box protein 1; ubiquitin, NEDD8, cullin, HOST-virus interaction, receptor, UBL conjugation, UBL conjugation pathway, acetylation, cytoplasm; 2.60A {Homo sapiens} SCOP: g.44.1.1 PDB: 3dqv_R 3rtr_B 4f52_B 1u6g_B 2hye_D* 4a0c_D 4a0l_F* 1ldj_B 1ldk_C 2lgv_A

Probab=98.68  E-value=9.4e-09  Score=73.55  Aligned_cols=46  Identities=17%  Similarity=0.335  Sum_probs=37.3

Q ss_pred             ccccccccccccc------------------eEEccCCCccccHhhHHHhhcCCCccccccccccc
Q 028047          159 GQLCVVCLTRRRI------------------SAFNPCGHLVCCRRCAISVEREASPKCPVCRMTVR  206 (214)
Q Consensus       159 ~~~C~IC~~~~~~------------------~~~lpCgH~~~C~~C~~~~~~~~~~~CP~CR~~i~  206 (214)
                      +..|.||++...+                  .+.++|||.| +..|+..|... +..||+||+.+.
T Consensus        37 ~d~CaIC~~~~~~~c~~C~~~~~~~~~~~~~~~~~~C~H~F-H~~Ci~~Wl~~-~~~CP~Cr~~~~  100 (106)
T 3dpl_R           37 VDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAF-HFHCISRWLKT-RQVCPLDNREWE  100 (106)
T ss_dssp             SCCCSSSCSCTTSCCTTHHHHTTCC---CCCEEEETTSCEE-EHHHHHHHHTT-CSBCSSSCSBCC
T ss_pred             CCCCccCChhHhCcCchhhccccccCCccceEeecccCcEE-CHHHHHHHHHc-CCcCcCCCCcce
Confidence            4579999987653                  3668999999 69999999854 568999999864

>3htk_C E3 SUMO-protein ligase MMS21; SUMO E3 ligase, SPL-ring, ring, ATP-binding, chromosomal protein, coiled coil, DNA damage; 2.31A {Saccharomyces cerevisiae}

Probab=98.50  E-value=8.4e-08  Score=78.55  Aligned_cols=50  Identities=16%  Similarity=0.287  Sum_probs=42.3

Q ss_pred             ccccccccccccccceEEc-cCCCccccHhhHHHhhcCC-Cccccc--ccccccc
Q 028047          157 PDGQLCVVCLTRRRISAFN-PCGHLVCCRRCAISVEREA-SPKCPV--CRMTVRS  207 (214)
Q Consensus       157 ~~~~~C~IC~~~~~~~~~l-pCgH~~~C~~C~~~~~~~~-~~~CP~--CR~~i~~  207 (214)
                      .....|+||++.+++|+.. .|||.| |..|+..++... ...||+  ||..+..
T Consensus       179 ~~el~CPIcl~~f~DPVts~~CGHsF-cR~cI~~~~~~~~~~~CPvtGCr~~l~~  232 (267)
T 3htk_C          179 KIELTCPITCKPYEAPLISRKCNHVF-DRDGIQNYLQGYTTRDCPQAACSQVVSM  232 (267)
T ss_dssp             BCCSBCTTTSSBCSSEEEESSSCCEE-EHHHHHHHSTTCSCEECSGGGCSCEECG
T ss_pred             ceeeECcCccCcccCCeeeCCCCCcc-cHHHHHHHHHhCCCCCCCcccccCcCch
Confidence            4567999999999999985 999999 999999998642 357999  9987753

>2d8s_A Cellular modulator of immune recognition; C-MIR, march8, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.44  E-value=7e-08  Score=65.47  Aligned_cols=51  Identities=18%  Similarity=0.530  Sum_probs=39.5

Q ss_pred             ccccccccccccc--cceEEccCC-----CccccHhhHHHhhcCC-Ccccccccccccce
Q 028047          157 PDGQLCVVCLTRR--RISAFNPCG-----HLVCCRRCAISVEREA-SPKCPVCRMTVRSS  208 (214)
Q Consensus       157 ~~~~~C~IC~~~~--~~~~~lpCg-----H~~~C~~C~~~~~~~~-~~~CP~CR~~i~~~  208 (214)
                      .+...|.||++..  .+.+.+||+     |.|| ..|+.+|.... ...||+||..+...
T Consensus        13 ~~~~~C~IC~~~~~~~~~l~~pC~C~Gs~h~fH-~~Cl~~Wl~~~~~~~CplCr~~~~~~   71 (80)
T 2d8s_A           13 SSQDICRICHCEGDDESPLITPCHCTGSLHFVH-QACLQQWIKSSDTRCCELCKYEFIME   71 (80)
T ss_dssp             TTSCCCSSSCCCCCSSSCEECSSSCCSSSCCEE-TTHHHHHHHHHCCSBCSSSCCBCCCC
T ss_pred             CCCCCCeEcCccccCCCeeEeccccCCcCCeeC-HHHHHHHHhhCCCCCCCCCCCeeecC
Confidence            3456899999765  456789996     9995 99999997642 24799999988643

>4a0k_B E3 ubiquitin-protein ligase RBX1; ligase-DNA-binding protein-DNA complex, DNA-binding protein- complex; HET: DNA 3DR; 5.93A {Mus musculus}

Probab=98.42  E-value=2.9e-08  Score=72.12  Aligned_cols=46  Identities=17%  Similarity=0.328  Sum_probs=0.4

Q ss_pred             ccccccccccccce------------------EEccCCCccccHhhHHHhhcCCCccccccccccc
Q 028047          159 GQLCVVCLTRRRIS------------------AFNPCGHLVCCRRCAISVEREASPKCPVCRMTVR  206 (214)
Q Consensus       159 ~~~C~IC~~~~~~~------------------~~lpCgH~~~C~~C~~~~~~~~~~~CP~CR~~i~  206 (214)
                      ...|.||++...+.                  +.++|+|.| +..|+..|... +..||+||+++.
T Consensus        48 ~d~CaICl~~~~~~c~~C~~~~~~~~~~~~~v~~~~C~H~F-H~~CI~~Wl~~-~~~CP~Cr~~~~  111 (117)
T 4a0k_B           48 VDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAF-HFHCISRWLKT-RQVCPLDNREWE  111 (117)
T ss_dssp             C-----------------------------------------------------------------
T ss_pred             CCcCeECChhhcCcChhhhcccccccccccccccCCcCceE-cHHHHHHHHHc-CCcCCCCCCeee
Confidence            45899999887642                  236999999 69999999854 558999999853

>3vk6_A E3 ubiquitin-protein ligase hakai; HYB, phosphotyrosine binding domain; 1.90A {Mus musculus}

Probab=98.34  E-value=3.7e-07  Score=63.61  Aligned_cols=49  Identities=29%  Similarity=0.646  Sum_probs=39.9

Q ss_pred             cccccccccc-eEEccCCCccccHhhHHHhhcCCCcccccccccccceEEe
Q 028047          162 CVVCLTRRRI-SAFNPCGHLVCCRRCAISVEREASPKCPVCRMTVRSSMRI  211 (214)
Q Consensus       162 C~IC~~~~~~-~~~lpCgH~~~C~~C~~~~~~~~~~~CP~CR~~i~~~~~i  211 (214)
                      |.+|--.... ...+||+|+| |.+|+..+..+..+.||.|+.+|..+-.+
T Consensus         4 C~~C~~Pi~iygRmIPCkHvF-CydCa~~~~~~~~k~Cp~C~~~V~rVe~~   53 (101)
T 3vk6_A            4 CDKCGLPIKVYGRMIPCKHVF-CYDCAILHEKKGDKMCPGCSDPVQRIEQC   53 (101)
T ss_dssp             CTTTCSBCSEEEEEETTCCEE-EHHHHHHHHHTTCCBCTTTCCBCSEEEEE
T ss_pred             cCccCCCeEEEeeeccccccH-HHHHHHHHHhccCCCCcCcCCeeeeeEEe
Confidence            6677666554 4578999999 99999999876677899999999987664

>1wim_A KIAA0161 protein; ring finger domain, UBCM4-interacting protein 4, UIP4, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.1

Probab=98.29  E-value=1.5e-07  Score=65.61  Aligned_cols=45  Identities=20%  Similarity=0.541  Sum_probs=35.2

Q ss_pred             ccccccccccccceEE---ccCCCccccHhhHHHhhcC-------CCccccc--cccc
Q 028047          159 GQLCVVCLTRRRISAF---NPCGHLVCCRRCAISVERE-------ASPKCPV--CRMT  204 (214)
Q Consensus       159 ~~~C~IC~~~~~~~~~---lpCgH~~~C~~C~~~~~~~-------~~~~CP~--CR~~  204 (214)
                      ...|.||++.......   .+|||.| |..|+..++..       ....||.  |+..
T Consensus         5 ~~~C~IC~~~~~~~~~~~l~~CgH~F-C~~Cl~~~~~~~i~~g~~~~i~CP~~~C~~~   61 (94)
T 1wim_A            5 SSGCKLCLGEYPVEQMTTIAQCQCIF-CTLCLKQYVELLIKEGLETAISCPDAACPKQ   61 (94)
T ss_dssp             BCCCSSSCCCCBGGGEEEETTTTEEE-EHHHHHHHHHHHHHHCSCCCEECSCTTCSSC
T ss_pred             CcCCcccCcccccccceEcCCCCCcc-cHHHHHHHHHHHhhcCCcccccCccccCCCC
Confidence            4579999998766433   3799999 99999988752       1347999  9987

>2bay_A PRE-mRNA splicing factor PRP19; U-BOX, ubiquitin ligase, E3 ligase; 1.50A {Saccharomyces cerevisiae} SCOP: g.44.1.2 PDB: 1n87_A

Probab=97.89  E-value=3.9e-06  Score=53.73  Aligned_cols=51  Identities=10%  Similarity=0.153  Sum_probs=42.7

Q ss_pred             cccccccccccceEEc-cCCCccccHhhHHHhhcCCCcccccccccccc--eEEee
Q 028047          160 QLCVVCLTRRRISAFN-PCGHLVCCRRCAISVEREASPKCPVCRMTVRS--SMRIY  212 (214)
Q Consensus       160 ~~C~IC~~~~~~~~~l-pCgH~~~C~~C~~~~~~~~~~~CP~CR~~i~~--~~~i~  212 (214)
                      ..|+||++...+++.. +|||.| ++.|+.+|... +..||+++.++..  ++++.
T Consensus         4 ~~CpIs~~~m~dPV~~~~sG~~y-er~~I~~~l~~-~~~cP~t~~~L~~~~Lip~~   57 (61)
T 2bay_A            4 MLCAISGKVPRRPVLSPKSRTIF-EKSLLEQYVKD-TGNDPITNEPLSIEEIVEIV   57 (61)
T ss_dssp             CCCTTTCSCCSSEEEETTTTEEE-EHHHHHHHHHH-HSBCTTTCCBCCGGGCEECC
T ss_pred             EEecCCCCCCCCCEEeCCCCcEE-cHHHHHHHHHh-CCCCcCCcCCCChhhcEECc
Confidence            5799999999999999 999999 89999999864 3469999998854  44443

>2ct0_A Non-SMC element 1 homolog; ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=97.88  E-value=1.8e-05  Score=52.55  Aligned_cols=50  Identities=18%  Similarity=0.422  Sum_probs=38.5

Q ss_pred             cccccccccccccceEE-ccCCCccccHhhHHHhhcCC-Ccccccccccccce
Q 028047          158 DGQLCVVCLTRRRISAF-NPCGHLVCCRRCAISVEREA-SPKCPVCRMTVRSS  208 (214)
Q Consensus       158 ~~~~C~IC~~~~~~~~~-lpCgH~~~C~~C~~~~~~~~-~~~CP~CR~~i~~~  208 (214)
                      ....|.||++....... ..|+|.|+ ..|+.+|.+.. ...||+||+.....
T Consensus        14 ~i~~C~IC~~~i~~g~~C~~C~h~fH-~~Ci~kWl~~~~~~~CP~Cr~~w~~~   65 (74)
T 2ct0_A           14 AVKICNICHSLLIQGQSCETCGIRMH-LPCVAKYFQSNAEPRCPHCNDYWPHE   65 (74)
T ss_dssp             SSCBCSSSCCBCSSSEECSSSCCEEC-HHHHHHHSTTCSSCCCTTTCSCCCSC
T ss_pred             CCCcCcchhhHcccCCccCCCCchhh-HHHHHHHHHhcCCCCCCCCcCcCCCC
Confidence            34589999998764433 38999997 99999998643 36899999987643

>1vyx_A ORF K3, K3RING; zinc-binding protein, ring domain, cross-brace motif; NMR {Human herpesvirus 8} SCOP: g.44.1.3

Probab=97.85  E-value=6e-06  Score=52.67  Aligned_cols=48  Identities=23%  Similarity=0.506  Sum_probs=37.7

Q ss_pred             cccccccccccccceEEccCCC-----ccccHhhHHHhhcC-CCccccccccccc
Q 028047          158 DGQLCVVCLTRRRISAFNPCGH-----LVCCRRCAISVERE-ASPKCPVCRMTVR  206 (214)
Q Consensus       158 ~~~~C~IC~~~~~~~~~lpCgH-----~~~C~~C~~~~~~~-~~~~CP~CR~~i~  206 (214)
                      +...|.||++...+..+.||.+     .++ ..|+.+|... .+..||+|+..+.
T Consensus         5 ~~~~CrIC~~~~~~~l~~PC~C~gs~~~~H-~~Cl~~W~~~~~~~~C~~C~~~~~   58 (60)
T 1vyx_A            5 DVPVCWICNEELGNERFRACGCTGELENVH-RSCLSTWLTISRNTACQICGVVYN   58 (60)
T ss_dssp             SCCEETTTTEECSCCCCCSCCCSSGGGSCC-HHHHHHHHHHHTCSBCTTTCCBCC
T ss_pred             CCCEeEEeecCCCCceecCcCCCCchhhhH-HHHHHHHHHhCCCCccCCCCCeee
Confidence            4568999998877777899763     676 8999999752 3568999998875

>3k1l_B Fancl; UBC, ring, RWD, ligase; HET: MAL CIT; 3.20A {Drosophila melanogaster}

Probab=97.47  E-value=1.6e-05  Score=67.45  Aligned_cols=50  Identities=16%  Similarity=0.351  Sum_probs=37.6

Q ss_pred             ccccccccccccccc--------eEEccCCCccccHhhHHHhhcCC----------Ccccccccccccc
Q 028047          157 PDGQLCVVCLTRRRI--------SAFNPCGHLVCCRRCAISVEREA----------SPKCPVCRMTVRS  207 (214)
Q Consensus       157 ~~~~~C~IC~~~~~~--------~~~lpCgH~~~C~~C~~~~~~~~----------~~~CP~CR~~i~~  207 (214)
                      +....|.||++...+        +...+|||.|| ..|+..|.+..          .+.||.||++|+.
T Consensus       306 e~~~ECaICys~~l~~g~lPdk~C~n~~C~h~FH-~~CL~kWLrs~~~sRqSFnvi~G~CPyCr~pIs~  373 (381)
T 3k1l_B          306 NEELRCNICFAYRLDGGEVPLVSCDNAKCVLKCH-AVCLEEWFKTLMDGKTFLEVSFGQCPFCKAKLST  373 (381)
T ss_dssp             CSCCSCSSSCCSSCTTCCCCCBCCSCTTCCCCBC-SGGGHHHHHHHHSSSCTTTCCEEECTTTCCEEEG
T ss_pred             cCCccCcccceeecCCCCCccccccCCccCCccc-hHHHHHHHHhCCCccccccccCCCCCCCCCcCCc
Confidence            345689999987655        12357999996 89999997521          1469999999875

>2jun_A Midline-1; B-BOX, TRIM, ring finger, alternative splicing, coiled coil, cytoplasm, cytoskeleton, disease mutation, ligase, metal-binding; NMR {Homo sapiens}

Probab=94.75  E-value=0.011  Score=40.99  Aligned_cols=31  Identities=19%  Similarity=0.410  Sum_probs=26.0

Q ss_pred             cccccccccc-ccceEE--ccCCCccccHhhHHHh
Q 028047          159 GQLCVVCLTR-RRISAF--NPCGHLVCCRRCAISV  190 (214)
Q Consensus       159 ~~~C~IC~~~-~~~~~~--lpCgH~~~C~~C~~~~  190 (214)
                      +..|.||.+. +.+++.  ++|+|.| |..|+..+
T Consensus         3 e~~C~~C~~~~~~~av~~C~~C~~~~-C~~Cl~~~   36 (101)
T 2jun_A            3 KVLCQFCDQDPAQDAVKTCVTCEVSY-CDECLKAT   36 (101)
T ss_dssp             CCBCTTCCSSSCCBCCEEETTTTEEE-CHHHHHHH
T ss_pred             CCCCcCCCCCCCCCceEECCcCChHH-hHHHCHHH
Confidence            4689999975 667776  9999999 99999983

>3nw0_A Non-structural maintenance of chromosomes element homolog; E3 ligase, Zn, metal binding protein; 2.92A {Homo sapiens}

Probab=94.63  E-value=0.024  Score=45.78  Aligned_cols=49  Identities=20%  Similarity=0.428  Sum_probs=37.0

Q ss_pred             ccccccccccccceEEcc-CCCccccHhhHHHhhcC-CCcccccccccccce
Q 028047          159 GQLCVVCLTRRRISAFNP-CGHLVCCRRCAISVERE-ASPKCPVCRMTVRSS  208 (214)
Q Consensus       159 ~~~C~IC~~~~~~~~~lp-CgH~~~C~~C~~~~~~~-~~~~CP~CR~~i~~~  208 (214)
                      -..|.||.+-......=+ |+|.+| ..|+..|.+. ....||.|+.....-
T Consensus       180 i~~C~iC~~iv~~g~~C~~C~~~~H-~~C~~~~~~~~~~~~CP~C~~~W~~~  230 (238)
T 3nw0_A          180 VKICNICHSLLIQGQSCETCGIRMH-LPCVAKYFQSNAEPRCPHCNDYWPHE  230 (238)
T ss_dssp             CCBCTTTCSBCSSCEECSSSCCEEC-HHHHHHHTTTCSSCBCTTTCCBCCSC
T ss_pred             CCcCcchhhHHhCCcccCccChHHH-HHHHHHHHHhCCCCCCCCCCCCCCCC
Confidence            457999998765544433 999997 9999999753 245899999887653

>2cs3_A Protein C14ORF4, MY039 protein; ZF-C3HC4 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.44.1.3

Probab=92.79  E-value=0.058  Score=35.74  Aligned_cols=34  Identities=24%  Similarity=0.556  Sum_probs=28.7

Q ss_pred             cccccccccccccceEEccC----CCccccHhhHHHhhc
Q 028047          158 DGQLCVVCLTRRRISAFNPC----GHLVCCRRCAISVER  192 (214)
Q Consensus       158 ~~~~C~IC~~~~~~~~~lpC----gH~~~C~~C~~~~~~  192 (214)
                      ....|.+|.++..+.-|+.|    +|.| |..|.....+
T Consensus        14 a~l~CtlC~erLEdtHFVQCPsv~~HkF-CFpCsr~sIk   51 (93)
T 2cs3_A           14 GPLCCTICHERLEDTHFVQCPSVPSHKF-CFPCSRESIK   51 (93)
T ss_dssp             CSCCCSSSCSCCSSTTSEECSSCSSCEE-CHHHHHHHHH
T ss_pred             CeeEeecchhhhccCceeeCCCccCCee-eccccHHHHH
Confidence            35689999999999999988    5999 9999987643

>1i4o_C X-linked IAP, baculoviral IAP repeat-containing protein 4; protease-inhibitor, apoptosis-hydrolase complex; 2.40A {Homo sapiens} PDB: 1kmc_C 1i51_E 1i3o_E 1c9q_A

Probab=92.44  E-value=0.0038  Score=46.35  Aligned_cols=59  Identities=17%  Similarity=0.424  Sum_probs=46.1

Q ss_pred             CceeecCCCCCCeeeeccCHHHHHHHhhhhhhhhhhhhhhhchhHHHHHHHHHHHHHH----HHHHHHHHHH
Q 028047           64 GIPEIKSCKDLPYFLSEKTKDLMVVDLVNRSKILFWSGIVLGSLSIGILGYAIVRNWN----RWKDRQQRMS  131 (214)
Q Consensus        64 g~~~l~~~~~~p~~ls~~~~d~Li~~l~~~~~~~~~~~i~~~~~~~~~~~~~~~r~~~----~~~~~~~~~~  131 (214)
                      -..||+++.+||+-....     ..+|+.+  +|+|.+  .++.+.|+.|...++.|.    .|.+|+++++
T Consensus        44 e~~Rl~TF~~WP~~~~~~-----p~~LA~A--GFyY~g--~~D~V~Cf~C~~~L~~We~~DdP~~EH~r~~P  106 (141)
T 1i4o_C           44 EEARLKSFQNWPDYAHLT-----PRELASA--GLYYTG--IGDQVQCFCCGGKLKNWEPCDRAWSEHRRHFP  106 (141)
T ss_pred             HHHHHHHHhcCCCCccCC-----HHHHHHc--CCcCcC--CCCEEEeccCCCEecCCCCCCCHHHHHHHHCc
Confidence            356888999999653222     2556666  899988  578899999999999998    5999999865

>2i3h_A Baculoviral IAP repeat-containing protein 7; zinc binding, peptide complex, apoptosis inhibition, peptidomimetic, small molecule, drug design, inhibitor/apoptosis complex; HET: BTB; 1.62A {Homo sapiens} SCOP: g.52.1.1 PDB: 2i3i_A* 3f7h_A* 3f7i_A* 3gt9_A* 3gta_A* 1tw6_A* 3uw5_A* 3f7g_A* 1oxn_A* 1oxq_A* 1oy7_A*

Probab=90.96  E-value=0.0018  Score=47.57  Aligned_cols=60  Identities=15%  Similarity=0.240  Sum_probs=46.1

Q ss_pred             CCceeecCCCCCCeeeeccCHHHHHHHhhhhhhhhhhhhhhhchhHHHHHHHHHHHHHH----HHHHHHHHHH
Q 028047           63 NGIPEIKSCKDLPYFLSEKTKDLMVVDLVNRSKILFWSGIVLGSLSIGILGYAIVRNWN----RWKDRQQRMS  131 (214)
Q Consensus        63 ~g~~~l~~~~~~p~~ls~~~~d~Li~~l~~~~~~~~~~~i~~~~~~~~~~~~~~~r~~~----~~~~~~~~~~  131 (214)
                      +-..||+++.+||+.....     ..+|+.+  +|+|.+  .++.+.|+.|...++.|.    .|.+|+++++
T Consensus        47 ~e~~RL~SF~~WP~~~~~~-----pe~LA~A--GFYYtg--~~D~V~Cf~C~~~L~~We~~DDP~~EH~r~~P  110 (133)
T 2i3h_A           47 SEELRLASFYDWPLTAEVP-----PELLAAA--GFFHTG--HQDKVRCFFCYGGLQSWKRGDDPWTEHAKWFP  110 (133)
T ss_dssp             CHHHHHHTTTTCSCTTTSC-----HHHHHHT--TEEECS--STTCEEETTTCCEEECCCTTCCHHHHHHHHCT
T ss_pred             CHHHHHHHHhcCCCCcCCC-----HHHHHHc--CCCCcC--CCCEEEecccCCEeCCCCCCCCHHHHHHHHCc
Confidence            3467889999999632222     2456666  899988  578889999999999997    5999999865

>2poi_A Baculoviral IAP repeat-containing protein 4; zinc finger, signaling protein/apoptosis complex; 1.80A {Homo sapiens} PDB: 2pop_B

Probab=88.98  E-value=0.0028  Score=43.87  Aligned_cols=59  Identities=14%  Similarity=0.179  Sum_probs=44.5

Q ss_pred             CceeecCCCCCCeeeeccCHHHHHHHhhhhhhhhhhhhhhhchhHHHHHHHHHHHHHH----HHHHHHHHHH
Q 028047           64 GIPEIKSCKDLPYFLSEKTKDLMVVDLVNRSKILFWSGIVLGSLSIGILGYAIVRNWN----RWKDRQQRMS  131 (214)
Q Consensus        64 g~~~l~~~~~~p~~ls~~~~d~Li~~l~~~~~~~~~~~i~~~~~~~~~~~~~~~r~~~----~~~~~~~~~~  131 (214)
                      -..||+++.+||.-... +    ..+|+.+  +|+|.+  .++.+.|+.|...+++|+    .|.+|+++++
T Consensus        21 e~~Rl~TF~~WP~~~~~-~----p~~LA~A--GFyytg--~~D~V~Cf~C~~~l~~We~~DdP~~eH~r~~P   83 (94)
T 2poi_A           21 EFNRLKTFANFPSGSPV-S----ASTLARA--GFLYTG--EGDTVRCFSCHAAVDRWQYGDSAVGRHRKVSP   83 (94)
T ss_dssp             HHHHHGGGTTCCTTSSS-C----HHHHHHT--TEEECS--STTCEEETTTCCEECCCCTTCCHHHHHHHHCT
T ss_pred             HHHHHHHHhcCCCCccC-C----HHHHHHc--CCCCcC--CCCEEEcccCCCEeCCCCCCCCHHHHHHHHCc
Confidence            35688999999963222 2    2456666  899988  578888999999999997    5999998843

>2qra_D XIAP, baculoviral IAP repeat-containing protein 4, inhibitor; apoptosis, signaling protein, zinc binding; 2.50A {Homo sapiens}

Probab=88.64  E-value=0.0037  Score=44.53  Aligned_cols=59  Identities=14%  Similarity=0.179  Sum_probs=44.8

Q ss_pred             CceeecCCCCCCeeeeccCHHHHHHHhhhhhhhhhhhhhhhchhHHHHHHHHHHHHHH----HHHHHHHHHH
Q 028047           64 GIPEIKSCKDLPYFLSEKTKDLMVVDLVNRSKILFWSGIVLGSLSIGILGYAIVRNWN----RWKDRQQRMS  131 (214)
Q Consensus        64 g~~~l~~~~~~p~~ls~~~~d~Li~~l~~~~~~~~~~~i~~~~~~~~~~~~~~~r~~~----~~~~~~~~~~  131 (214)
                      -..||+++.+||+-... +    ..+|+.+  +|+|.+  .++.+.|+.|...+++|+    .|.+|+++++
T Consensus        38 e~~RL~TF~~WP~~~~~-~----p~~LA~A--GFyYtg--~~D~V~Cf~C~~~L~~We~~DdP~~eH~r~sP  100 (111)
T 2qra_D           38 EFNRLKTFANFPSGSPV-S----ASTLARA--GFLYTG--EGDTVRCFSCHAAVDRWQYGDSAVGRHRKVSP  100 (111)
T ss_dssp             HHHHHHTTTTCCTTCSS-C----HHHHHHT--TEEECS--STTCEEETTTCCEECCCCTTCCHHHHHHHHCT
T ss_pred             HHHHHHHHhcCCCCccC-C----HHHHHHc--CCCCcC--CCCEEEcccCCCEeCCCCCCCCHHHHHHHHCc
Confidence            35788999999963222 2    2456666  999998  578889999999999997    5999998843

>1jd5_A DIAP1, apoptosis 1 inhibitor; IAP, caspase activation; 1.90A {Drosophila melanogaster} SCOP: g.52.1.1 PDB: 1jd4_A 1jd6_A 1q4q_A

Probab=87.75  E-value=0.0033  Score=45.65  Aligned_cols=58  Identities=19%  Similarity=0.372  Sum_probs=45.0

Q ss_pred             ceeecCCCCCCeeeeccCHHHHHHHhhhhhhhhhhhhhhhchhHHHHHHHHHHHHHH----HHHHHHHHHH
Q 028047           65 IPEIKSCKDLPYFLSEKTKDLMVVDLVNRSKILFWSGIVLGSLSIGILGYAIVRNWN----RWKDRQQRMS  131 (214)
Q Consensus        65 ~~~l~~~~~~p~~ls~~~~d~Li~~l~~~~~~~~~~~i~~~~~~~~~~~~~~~r~~~----~~~~~~~~~~  131 (214)
                      ..||+++.+||+-....     ..+|+.+  +|+|.+  .++.+.|+.|...++.|.    .|.+|+++++
T Consensus        27 ~~Rl~TF~~WP~~~~~~-----p~~LA~A--GFyYtg--~~D~V~Cf~C~~~L~~We~~DdP~~EH~r~~P   88 (124)
T 1jd5_A           27 TARLRTFEAWPRNLKQK-----PHQLAEA--GFFYTG--VGDRVRCFSCGGGLMDWNDNDEPWEQHALWLS   88 (124)
T ss_dssp             HHHHHHGGGCCTTCSSC-----HHHHHHT--TEEECS--STTCEEETTTCCEEECCCTTCCHHHHHHHHCT
T ss_pred             HHHHHHHhhCCCCccCC-----HHHHHHc--CCCCcC--CCCEEEecCCCCEecCCCCCCCHHHHHHHHCc
Confidence            46788898899643222     2556666  999998  578889999999999997    5999999966

>2vm5_A Baculoviral IAP repeat-containing protein 1; apoptosis; 1.80A {Homo sapiens}

Probab=87.43  E-value=0.0031  Score=44.58  Aligned_cols=60  Identities=13%  Similarity=0.314  Sum_probs=45.4

Q ss_pred             CceeecCCCCCCeeeeccCHHHHHHHhhhhhhhhhhhhhhhchhHHHHHHHHHHHHHH----HHHHHHHHHH
Q 028047           64 GIPEIKSCKDLPYFLSEKTKDLMVVDLVNRSKILFWSGIVLGSLSIGILGYAIVRNWN----RWKDRQQRMS  131 (214)
Q Consensus        64 g~~~l~~~~~~p~~ls~~~~d~Li~~l~~~~~~~~~~~i~~~~~~~~~~~~~~~r~~~----~~~~~~~~~~  131 (214)
                      -..||+++.+||+-....+    ..+|+.+  +|+|.+  .++.+.|+.|...++.|.    .|.+|+++++
T Consensus        21 ~~~Rl~TF~~WP~~~~~~~----p~~LA~A--GFyy~g--~~D~V~Cf~C~~~L~~We~~DdP~~eH~r~~p   84 (106)
T 2vm5_A           21 EEARLASFRNWPFYVQGIS----PCVLSEA--GFVFTG--KQDTVQCFSCGGCLGNWEEGDDPWKEHAKWFP   84 (106)
T ss_dssp             HHHHHHGGGGCCGGGTTSC----HHHHHHT--TEEECS--STTCEEETTTCCEEESCCTTCCHHHHHHHHCT
T ss_pred             HHHHHHHHhcCCCCcccCC----HHHHHHc--CCCCcC--CCCEEEccccCCEecCCCCCCCHHHHHHHHCc
Confidence            3567888989996443122    2456666  899988  577788999999999997    6999999866

>3mup_A Baculoviral IAP repeat-containing protein 2; zinc-finger motif, apoptosis inhibitor; HET: SMK; 2.60A {Homo sapiens} SCOP: g.52.1.1 PDB: 3oz1_A* 4eb9_A*

Probab=84.72  E-value=0.0054  Score=44.42  Aligned_cols=58  Identities=10%  Similarity=0.221  Sum_probs=44.2

Q ss_pred             ceeecCCCCCCeeeeccCHHHHHHHhhhhhhhhhhhhhhhchhHHHHHHHHHHHHHH----HHHHHHHHHH
Q 028047           65 IPEIKSCKDLPYFLSEKTKDLMVVDLVNRSKILFWSGIVLGSLSIGILGYAIVRNWN----RWKDRQQRMS  131 (214)
Q Consensus        65 ~~~l~~~~~~p~~ls~~~~d~Li~~l~~~~~~~~~~~i~~~~~~~~~~~~~~~r~~~----~~~~~~~~~~  131 (214)
                      ..|++++.+||+.....+     .+|+.+  +|+|.+  .++.+.|+.|...++.|.    .|.+|+++++
T Consensus        21 ~~Rl~TF~~WP~~~~~~p-----~~LA~A--GFyy~g--~~D~V~Cf~C~~~L~~We~~DdP~~EH~r~~P   82 (122)
T 3mup_A           21 AARMRTFMYWPSSVPVQP-----EQLASA--GFYYVG--RNDDVKCFCCDGGLRCWESGDDPWVEHAKWFP   82 (122)
T ss_dssp             HHHHHGGGGCCTTCSSCH-----HHHHHT--TEEECS--STTCEEETTTCCEECCCCTTCCHHHHHHHHCT
T ss_pred             HHHHHHHhcCCCcccCCH-----HHHHHC--CCeEeC--CCCeEEecCcCCEecCCCCCCCHHHHHHHHCc
Confidence            468889988996432222     456666  899887  578888999999999997    6999999865

>1g73_C Inhibitors of apoptosis-like protein ILP; helix bundle, zinc-binding domain, apoptosis/apoptosis inhibitor complex; 2.00A {Homo sapiens} SCOP: g.52.1.1 PDB: 3cm2_D* 3clx_D* 3cm7_C* 1f9x_A 1g3f_A 1tfq_A* 1tft_A* 3eyl_A* 3g76_A* 2jk7_A* 2opz_A 2opy_A* 1xb0_A 1xb1_A

Probab=84.33  E-value=0.0097  Score=43.03  Aligned_cols=56  Identities=13%  Similarity=0.147  Sum_probs=43.8

Q ss_pred             ceeecCCCCCCeeeeccCHHHHHHHhhhhhhhhhhhhhhhchhHHHHHHHHHHHHHH----HHHHHHHHHH
Q 028047           65 IPEIKSCKDLPYFLSEKTKDLMVVDLVNRSKILFWSGIVLGSLSIGILGYAIVRNWN----RWKDRQQRMS  131 (214)
Q Consensus        65 ~~~l~~~~~~p~~ls~~~~d~Li~~l~~~~~~~~~~~i~~~~~~~~~~~~~~~r~~~----~~~~~~~~~~  131 (214)
                      ..||+++.+||+-   .+    ..+|+.+  +|+|.+  .++.+.|+.|...++.|.    .|.+|+++++
T Consensus        29 ~~Rl~TF~~Wp~~---~~----p~~LA~A--GFyy~g--~~D~V~Cf~C~~~L~~We~~DdP~~eH~r~~P   88 (121)
T 1g73_C           29 EARIFTFGTWIYS---VN----KEQLARA--GFYALG--EGDKVKCFHCGGGLTDWKPSEDPWEQHAKWYP   88 (121)
T ss_dssp             HHHHHTTTTCCSS---SC----HHHHHHT--TEEECS--STTCEEETTTCCEEESCCTTCCHHHHHHHHCT
T ss_pred             HHHHHHHccCCCC---CC----HHHHHHc--CCCCcC--CCCEEEcCcCCCCcCCCCCCCCHHHHHHHHCc
Confidence            5678899999854   22    2456666  899987  677788999999999997    5999999865

>1se0_A Apoptosis 1 inhibitor; apoptosis, IAP, BIR, caspase; 1.75A {Drosophila melanogaster} SCOP: g.52.1.1 PDB: 1sdz_A 3sip_E

Probab=83.86  E-value=0.014  Score=41.90  Aligned_cols=57  Identities=12%  Similarity=0.185  Sum_probs=44.7

Q ss_pred             ceeecCCCCCCeeeeccCHHHHHHHhhhhhhhhhhhhhhhchhHHHHHHHHHHHHHH----HHHHHHHHHH
Q 028047           65 IPEIKSCKDLPYFLSEKTKDLMVVDLVNRSKILFWSGIVLGSLSIGILGYAIVRNWN----RWKDRQQRMS  131 (214)
Q Consensus        65 ~~~l~~~~~~p~~ls~~~~d~Li~~l~~~~~~~~~~~i~~~~~~~~~~~~~~~r~~~----~~~~~~~~~~  131 (214)
                      ..||+++.+||+  ...+    ..+|+.+  +|+|.+  .++.+.|+.|...++.|.    .|.+|+++++
T Consensus        16 ~~Rl~TF~~WP~--~~~~----~~~LA~A--GFyy~g--~~D~V~Cf~C~~~L~~We~~DdP~~eH~r~~p   76 (116)
T 1se0_A           16 ETRLKTFTDWPL--DWLD----KRQLAQT--GMYFTH--AGDKVKCFFCGVEIGSWEQEDQPVPEHQRWSP   76 (116)
T ss_dssp             HHHHTTCTTCCC--TTSC----HHHHHHT--TEEECS--STTCEEETTTCCEEESCCTTCCHHHHHHHHCT
T ss_pred             HHHHHHHhhCCC--CcCC----HHHHHHc--CCcCcC--CCCEEEecCcCCEecCCCCCCCHHHHHHHHCc
Confidence            568889999996  2222    2556666  899988  678888999999999997    5999999865

>3d9t_A Baculoviral IAP repeat-containing protein 2; zinc finger, apoptosis, cytoplasm, metal-binding, polymorphism, zinc, zinc-finger, alternative splicing, hydrolase, protease; 1.50A {Homo sapiens} SCOP: g.52.1.1 PDB: 3d9u_A 3uw4_A* 2uvl_A

Probab=83.80  E-value=0.0055  Score=42.59  Aligned_cols=58  Identities=10%  Similarity=0.201  Sum_probs=43.3

Q ss_pred             ceeecCCCCCCeeeeccCHHHHHHHhhhhhhhhhhhhhhhchhHHHHHHHHHHHHHH----HHHHHHHHHH
Q 028047           65 IPEIKSCKDLPYFLSEKTKDLMVVDLVNRSKILFWSGIVLGSLSIGILGYAIVRNWN----RWKDRQQRMS  131 (214)
Q Consensus        65 ~~~l~~~~~~p~~ls~~~~d~Li~~l~~~~~~~~~~~i~~~~~~~~~~~~~~~r~~~----~~~~~~~~~~  131 (214)
                      ..||+++.+||+-... +    ..+|+.+  +|+|.+  .++.+.|+.|...++.|.    .|.+|+++++
T Consensus        15 ~~Rl~TF~~Wp~~~~~-~----~~~LA~A--GFyy~g--~~D~v~Cf~C~~~l~~We~~Ddp~~eH~r~~p   76 (97)
T 3d9t_A           15 AARMRTFMYWPSSVPV-Q----PEQLASA--GFYYVG--RNDDVKCFCCDGGLRCWESGDDPWVEHAKWFP   76 (97)
T ss_dssp             HHHHHGGGGCCTTSSS-C----HHHHHHT--TEEECS--STTCEEETTTCCEEECCCTTCCHHHHHHHHCT
T ss_pred             HHHHHHHhcCCCcccC-C----HHHHHHc--CCCCcC--CCCEEEecCcCCEecCCCCCCCHHHHHHHhCc
Confidence            5688889889864222 2    2456666  888887  467788888888889997    5999999865

>3m1d_A Baculoviral IAP repeat-containing protein 2; BIR, apoptosis, cytoplasm, polymorphism, zinc, zinc-FIN metal binding protein; 2.00A {Homo sapiens} PDB: 3m0a_D 3m0d_D

Probab=82.15  E-value=0.0092  Score=40.40  Aligned_cols=58  Identities=10%  Similarity=0.209  Sum_probs=43.4

Q ss_pred             ceeecCCCCCCeeeeccCHHHHHHHhhhhhhhhhhhhhhhchhHHHHHHHHHHHHHH----HHHHHHHHHH
Q 028047           65 IPEIKSCKDLPYFLSEKTKDLMVVDLVNRSKILFWSGIVLGSLSIGILGYAIVRNWN----RWKDRQQRMS  131 (214)
Q Consensus        65 ~~~l~~~~~~p~~ls~~~~d~Li~~l~~~~~~~~~~~i~~~~~~~~~~~~~~~r~~~----~~~~~~~~~~  131 (214)
                      ..|++++.+||.-....+     .+|+.+  +|+|.+  .++.+.|+.+...+..|+    .|.+|+++.+
T Consensus        13 ~~Rl~TF~~WP~~~~~~~-----~~LA~A--GFyy~g--~~D~v~Cf~C~~~l~~We~~DdP~~eH~~~~p   74 (85)
T 3m1d_A           13 LYRMSTYSTFPAGVPVSE-----RSLARA--GFYYTG--VNDKVKCFCCGLMLDNWKLGDSPIQKHKQLYP   74 (85)
T ss_dssp             HHHHHGGGGCCTTCSSCH-----HHHHHT--TEEECS--STTCEEETTTCCEECSCCTTCCHHHHHHHHCT
T ss_pred             HHHHHHHhcCCCCCcCCH-----HHHHHC--CCeEeC--CCCEEEeCCcCCEecCCCCCCCHHHHHHHHCc
Confidence            467889989986432222     456666  888888  577888999988899997    5999988844

>3t6p_A Baculoviral IAP repeat-containing protein 2; ring, BIR, CARD, UBA, apoptosis, ubiquitin ligase, SMAC/ ubiquitin, caspase, IAP family, SMAC mimetic; 1.90A {Homo sapiens} PDB: 1qbh_A 2l9m_A 3eb5_A 3eb6_A 4auq_B

Probab=81.36  E-value=0.013  Score=49.92  Aligned_cols=58  Identities=10%  Similarity=0.217  Sum_probs=45.1

Q ss_pred             ceeecCCCCCCeeeeccCHHHHHHHhhhhhhhhhhhhhhhchhHHHHHHHHHHHHHH----HHHHHHHHHH
Q 028047           65 IPEIKSCKDLPYFLSEKTKDLMVVDLVNRSKILFWSGIVLGSLSIGILGYAIVRNWN----RWKDRQQRMS  131 (214)
Q Consensus        65 ~~~l~~~~~~p~~ls~~~~d~Li~~l~~~~~~~~~~~i~~~~~~~~~~~~~~~r~~~----~~~~~~~~~~  131 (214)
                      ..|++++.+||+.....+     .+|+.+  +|||.+  .++.+.|+.|...++.|.    +|.+|+++++
T Consensus         7 ~~Rl~tF~~WP~~~~~~~-----~~lA~A--GFyy~g--~~D~v~Cf~C~~~l~~We~~DdP~~eH~~~~p   68 (345)
T 3t6p_A            7 AARMRTFMYWPSSVPVQP-----EQLASA--GFYYVG--RNDDVKCFSCDGGLRCWESGDDPWVEHAKWFP   68 (345)
T ss_dssp             HHHHHHGGGSCTTCSSCH-----HHHHHT--TEEECS--STTCEEETTTCCEECCCCTTCCHHHHHHHHCT
T ss_pred             HHHHHHHhhCCCcccCCH-----HHHHhC--CCeecC--CCCeEEecCCCCCccCCCCCCCHHHHHHHhCC
Confidence            357888989996533233     456666  899988  588899999999999997    6999999866

>3hl5_A Baculoviral IAP repeat-containing protein 4; BIR, apoptosis, small molecule drug discovery, structur drug design, ligase, metal-binding; HET: 9JZ; 1.80A {Homo sapiens} PDB: 1nw9_A 2vsl_A

Probab=80.40  E-value=0.016  Score=40.12  Aligned_cols=56  Identities=13%  Similarity=0.147  Sum_probs=43.6

Q ss_pred             ceeecCCCCCCeeeeccCHHHHHHHhhhhhhhhhhhhhhhchhHHHHHHHHHHHHHH----HHHHHHHHHH
Q 028047           65 IPEIKSCKDLPYFLSEKTKDLMVVDLVNRSKILFWSGIVLGSLSIGILGYAIVRNWN----RWKDRQQRMS  131 (214)
Q Consensus        65 ~~~l~~~~~~p~~ls~~~~d~Li~~l~~~~~~~~~~~i~~~~~~~~~~~~~~~r~~~----~~~~~~~~~~  131 (214)
                      ..|++++.+||+-   .+    ..+|+.+  +|+|.+  .++.+.|+.|...++.|.    .|.+|+++++
T Consensus        15 ~~Rl~TF~~Wp~~---~~----~~~LA~A--GFyy~g--~~D~v~Cf~C~~~l~~We~~DdP~~eH~r~~p   74 (95)
T 3hl5_A           15 EARIFTFGTWIYS---VN----KEQLARA--GFYALG--EGDKVKCFHCGGGLTDWKPSEDPWEQHAKWYP   74 (95)
T ss_dssp             HHHHHTTTTCCSS---SC----HHHHHHT--TEEECS--STTCEEETTTCCEECCCCTTCCHHHHHHHHCT
T ss_pred             HHHHHHHcCCCCC---CC----HHHHHhC--CCeEcC--CCCeEEecCCCCCccCcCCCCCHHHHHHHHCc
Confidence            4678899999863   22    2456666  888887  678888999989999997    5999999865

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	214
d1fbva4	79	g.44.1.1 (A:356-434) CBL {Human (Homo sapiens) [Ta	2e-09
d1rmda2	86	g.44.1.1 (A:1-86) V(D)J recombination activating p	2e-05
d1bora_	56	g.44.1.1 (A:) Acute promyelocytic leukaemia proto-	2e-04
d1chca_	68	g.44.1.1 (A:) Immediate early protein, IEEHV {Equi	0.002
d1jm7a_	103	g.44.1.1 (A:) brca1 RING domain {Human (Homo sapie	0.003

>d1fbva4 g.44.1.1 (A:356-434) CBL {Human (Homo sapiens) [TaxId: 9606]} Length = 79

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: CBL
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 50.4 bits (120), Expect = 2e-09
 Identities = 16/55 (29%), Positives = 23/55 (41%), Gaps = 1/55 (1%)

Query: 158 DGQLCVVCLTRRRISAFNPCGHLVCCRRCAISVEREASPKCPVCRMTVRSSMRIY 212
             QLC +C    +     PCGH + C  C  S +      CP CR  ++ +  I 
Sbjct: 22  TFQLCKICAENDKDVKIEPCGH-LMCTSCLTSWQESEGQGCPFCRCEIKGTEPIV 75

>d1rmda2 g.44.1.1 (A:1-86) V(D)J recombination activating protein 1 (RAG1), dimerization domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 86

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: V(D)J recombination activating protein 1 (RAG1), dimerization domain
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 39.5 bits (92), Expect = 2e-05
 Identities = 12/59 (20%), Positives = 17/59 (28%), Gaps = 1/59 (1%)

Query: 150 EDVAGDIPDGQLCVVCLTRRRISAFNPCGHLVCCRRCAISVEREASPKCPVCRMTVRSS 208
            D          C +C           C H + CR C +   +     CP CR     +
Sbjct: 14  VDFPAHFVKSISCQICEHILADPVETSCKH-LFCRICILRCLKVMGSYCPSCRYPCFPT 71

>d1bora_ g.44.1.1 (A:) Acute promyelocytic leukaemia proto-oncoprotein PML {Human (Homo sapiens) [TaxId: 9606]} Length = 56

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: Acute promyelocytic leukaemia proto-oncoprotein PML
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 35.6 bits (82), Expect = 2e-04
 Identities = 10/47 (21%), Positives = 15/47 (31%), Gaps = 5/47 (10%)

Query: 162 CVVCLTRRRISAFNPCGHLVCCRRCAISVEREASPKCPVCRMTVRSS 208
           C  C    +     PC H   C  C       +  +CP+C+      
Sbjct: 9   CQQCQAEAKCPKLLPCLH-TLCSGCL----EASGMQCPICQAPWPLG 50

>d1chca_ g.44.1.1 (A:) Immediate early protein, IEEHV {Equine herpesvirus 1 [TaxId: 10326]} Length = 68

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: Immediate early protein, IEEHV
species: Equine herpesvirus 1 [TaxId: 10326]

 Score = 33.4 bits (76), Expect = 0.002
 Identities = 15/50 (30%), Positives = 23/50 (46%), Gaps = 3/50 (6%)

Query: 159 GQLCVVCLTRRRISAF-NPCGHLVCCRRCAISVEREASPKCPVCRMTVRS 207
            + C +CL      +   PC H   C  C I+     +P CP+C++ V S
Sbjct: 5   AERCPICLEDPSNYSMALPCLH-AFCYVC-ITRWIRQNPTCPLCKVPVES 52

>d1jm7a_ g.44.1.1 (A:) brca1 RING domain {Human (Homo sapiens) [TaxId: 9606]} Length = 103

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: brca1 RING domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 33.9 bits (77), Expect = 0.003
 Identities = 11/68 (16%), Positives = 27/68 (39%), Gaps = 1/68 (1%)

Query: 140 DDADSQIGSDEDVAGDIPDGQLCVVCLTRRRISAFNPCGHLVCCRRCAISVE-REASPKC 198
           D +  ++   ++V   +     C +CL   +      C H+ C       +  ++   +C
Sbjct: 2   DLSALRVEEVQNVINAMQKILECPICLELIKEPVSTKCDHIFCKFCMLKLLNQKKGPSQC 61

Query: 199 PVCRMTVR 206
           P+C+  + 
Sbjct: 62  PLCKNDIT 69

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	214
d1fbva4	79	CBL {Human (Homo sapiens) [TaxId: 9606]}	99.4
d1rmda2	86	V(D)J recombination activating protein 1 (RAG1), d	99.29
d1chca_	68	Immediate early protein, IEEHV {Equine herpesvirus	99.25
d1g25a_	65	TFIIH Mat1 subunit {Human (Homo sapiens) [TaxId: 9	99.21
d1bora_	56	Acute promyelocytic leukaemia proto-oncoprotein PM	99.18
d2c2la2	80	STIP1 homology and U box-containing protein 1, STU	99.15
d1t1ha_	78	E3 ubiquitin ligase PUB14 {Thale-cress (Arabidopsi	99.13
d1iyma_	55	EL5 RING-H2 domain {Rice (Oryza sativa) [TaxId: 45	99.13
d1ur6b_	52	Not-4 N-terminal RING finger domain {Human (Homo s	99.13
d1jm7a_	103	brca1 RING domain {Human (Homo sapiens) [TaxId: 96	99.07
d2baya1	56	Pre-mRNA splicing factor Prp19 {Baker's yeast (Sac	99.0
d1jm7b_	97	bard1 RING domain {Human (Homo sapiens) [TaxId: 96	98.93
d1v87a_	114	Deltex protein 2 RING-H2 domain {Mouse (Mus muscul	98.79
d3dplr1	88	RIGG-box protein 1 (RBX1) of SCF ubiquitin ligase	98.75
d1wgma_	98	Ubiquitin conjugation factor E4A {Human (Homo sapi	98.75
d1vyxa_	60	IE1B protein (ORF K3), N-terminal domain {Kaposi's	98.59
d1wima_	94	UbcM4-interacting protein 4 (KIAA0161) {Human (Hom	97.92
d2cs3a1	80	Protein c14orf4 (KIAA1865) {Human (Homo sapiens) [	91.88
d2vsla1	96	BIR domains of XIAP {Human (Homo sapiens) [TaxId:	87.92
d2i3ha1	90	BIR-containing protein 7 (ML-IAP, livin) {Human (H	87.73
d3d9ta1	87	2MIHB/C-IAP-1 {Human (Homo sapiens) [TaxId: 9606]}	85.7
d1i3oe_	111	BIR domains of XIAP {Human (Homo sapiens) [TaxId:	85.46
d1jd5a_	105	BIR domains of DIAP1 {Fruit fly (Drosophila melano	84.56

>d1fbva4 g.44.1.1 (A:356-434) CBL {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: CBL
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.40  E-value=4.7e-14  Score=94.52  Aligned_cols=52  Identities=33%  Similarity=0.836  Sum_probs=45.5

Q ss_pred             cccccccccccceEEccCCCccccHhhHHHhhcCCCcccccccccccceEEee
Q 028047          160 QLCVVCLTRRRISAFNPCGHLVCCRRCAISVEREASPKCPVCRMTVRSSMRIY  212 (214)
Q Consensus       160 ~~C~IC~~~~~~~~~lpCgH~~~C~~C~~~~~~~~~~~CP~CR~~i~~~~~i~  212 (214)
                      ..|+||++...+++++||||.| |..|+..|.......||+||..|.....+.
T Consensus        24 ~~C~IC~~~~~~~~~~~CgH~f-C~~Ci~~wl~~~~~~CP~Cr~~i~~~~~i~   75 (79)
T d1fbva4          24 QLCKICAENDKDVKIEPCGHLM-CTSCLTSWQESEGQGCPFCRCEIKGTEPIV   75 (79)
T ss_dssp             TBCTTTSSSBCCEECSSSCCEE-CHHHHHHHHHTTCCSCTTTCCCCCCCCCSS
T ss_pred             CCCccCCCcCCCeEEeCCCCee-eHHHHHHHHHHCcCcCCCCCcCccCCceee
Confidence            4799999999999999999999 999999998655567999999998876553

>d1rmda2 g.44.1.1 (A:1-86) V(D)J recombination activating protein 1 (RAG1), dimerization domain {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: V(D)J recombination activating protein 1 (RAG1), dimerization domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.29  E-value=2.3e-13  Score=92.30  Aligned_cols=50  Identities=24%  Similarity=0.535  Sum_probs=43.7

Q ss_pred             ccccccccccccccceEEccCCCccccHhhHHHhhcCCCcccccccccccc
Q 028047          157 PDGQLCVVCLTRRRISAFNPCGHLVCCRRCAISVEREASPKCPVCRMTVRS  207 (214)
Q Consensus       157 ~~~~~C~IC~~~~~~~~~lpCgH~~~C~~C~~~~~~~~~~~CP~CR~~i~~  207 (214)
                      .+...|+||++.+.+++.++|||.| |..|+..|.+.....||+||.++..
T Consensus        21 ~~~l~C~IC~~~~~~pv~~~CgH~F-C~~Ci~~~~~~~~~~CP~Cr~p~~~   70 (86)
T d1rmda2          21 VKSISCQICEHILADPVETSCKHLF-CRICILRCLKVMGSYCPSCRYPCFP   70 (86)
T ss_dssp             HHHTBCTTTCSBCSSEEECTTSCEE-EHHHHHHHHHHTCSBCTTTCCBCCG
T ss_pred             ccCcCCccCCcchhcceecCCCChh-hHHHHHHHHhhCCCcCcccCCCCCh
Confidence            3456899999999999999999999 9999999986555689999998764

>d1chca_ g.44.1.1 (A:) Immediate early protein, IEEHV {Equine herpesvirus 1 [TaxId: 10326]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: Immediate early protein, IEEHV
species: Equine herpesvirus 1 [TaxId: 10326]

Probab=99.25  E-value=9.1e-13  Score=85.56  Aligned_cols=51  Identities=29%  Similarity=0.695  Sum_probs=42.0

Q ss_pred             ccccccccccccce-EEccCCCccccHhhHHHhhcCCCcccccccccccceEEe
Q 028047          159 GQLCVVCLTRRRIS-AFNPCGHLVCCRRCAISVEREASPKCPVCRMTVRSSMRI  211 (214)
Q Consensus       159 ~~~C~IC~~~~~~~-~~lpCgH~~~C~~C~~~~~~~~~~~CP~CR~~i~~~~~i  211 (214)
                      ...|+||++.+.+. +.+||||.| |..|+.+|.+. +..||+||++|..+...
T Consensus         5 ~d~C~IC~~~~~~~~~~~~C~H~F-c~~Ci~~w~~~-~~~CP~CR~~i~~~~~~   56 (68)
T d1chca_           5 AERCPICLEDPSNYSMALPCLHAF-CYVCITRWIRQ-NPTCPLCKVPVESVVHT   56 (68)
T ss_dssp             CCCCSSCCSCCCSCEEETTTTEEE-STTHHHHHHHH-SCSTTTTCCCCCCEECC
T ss_pred             CCCCccCCcCccCCcEEeCCCCcC-cHHHHHHHHHh-CCcCCCCCcchHhhccc
Confidence            44699999998775 558999999 89999999864 56899999999876543

>d1g25a_ g.44.1.1 (A:) TFIIH Mat1 subunit {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: TFIIH Mat1 subunit
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.21  E-value=3e-12  Score=82.29  Aligned_cols=49  Identities=31%  Similarity=0.634  Sum_probs=39.2

Q ss_pred             cccccccccccc-----cceEEccCCCccccHhhHHHhhcCCCcccccccccccc
Q 028047          158 DGQLCVVCLTRR-----RISAFNPCGHLVCCRRCAISVEREASPKCPVCRMTVRS  207 (214)
Q Consensus       158 ~~~~C~IC~~~~-----~~~~~lpCgH~~~C~~C~~~~~~~~~~~CP~CR~~i~~  207 (214)
                      ++..|+||++..     ...++.+|||.| |..|+..|....+..||+||+++..
T Consensus         2 dd~~CpIC~~~~~~~~~~~~~~~~C~H~f-c~~Ci~~~~~~~~~~CP~CR~~i~~   55 (65)
T d1g25a_           2 DDQGCPRCKTTKYRNPSLKLMVNVCGHTL-CESCVDLLFVRGAGNCPECGTPLRK   55 (65)
T ss_dssp             CTTCCSTTTTHHHHCSSCCEEECTTCCCE-EHHHHHHHHHTTSSSCTTTCCCCSS
T ss_pred             CCCCCCcCCceeecCCceEEEeCccChHh-hHHHHHHHhCcCcCCCCCCCcCccc
Confidence            356899999863     224667999999 8999999986555679999999864

>d1bora_ g.44.1.1 (A:) Acute promyelocytic leukaemia proto-oncoprotein PML {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: Acute promyelocytic leukaemia proto-oncoprotein PML
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.18  E-value=7.9e-13  Score=82.43  Aligned_cols=44  Identities=23%  Similarity=0.592  Sum_probs=38.4

Q ss_pred             ccccccccccccceEEccCCCccccHhhHHHhhcCCCcccccccccccc
Q 028047          159 GQLCVVCLTRRRISAFNPCGHLVCCRRCAISVEREASPKCPVCRMTVRS  207 (214)
Q Consensus       159 ~~~C~IC~~~~~~~~~lpCgH~~~C~~C~~~~~~~~~~~CP~CR~~i~~  207 (214)
                      ...|+||++...+++.+||||.| |..|+.++    +..||+||+++..
T Consensus         6 ~l~C~IC~~~~~~p~~lpCgH~f-C~~Ci~~~----~~~CP~Cr~~~~~   49 (56)
T d1bora_           6 FLRCQQCQAEAKCPKLLPCLHTL-CSGCLEAS----GMQCPICQAPWPL   49 (56)
T ss_dssp             CSSCSSSCSSCBCCSCSTTSCCS-BTTTCSSS----SSSCSSCCSSSSC
T ss_pred             CCCCcccCcccCCCEEecCCCHH-hHHHHHcC----CCcCcCCCCcccC
Confidence            45899999999999999999999 89998764    3579999999864

>d2c2la2 g.44.1.2 (A:225-304) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: U-box
domain: STIP1 homology and U box-containing protein 1, STUB1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.15  E-value=7e-12  Score=83.82  Aligned_cols=52  Identities=21%  Similarity=0.196  Sum_probs=45.9

Q ss_pred             CCccccccccccccccceEEccCCCccccHhhHHHhhcCCCcccccccccccc
Q 028047          155 DIPDGQLCVVCLTRRRISAFNPCGHLVCCRRCAISVEREASPKCPVCRMTVRS  207 (214)
Q Consensus       155 ~~~~~~~C~IC~~~~~~~~~lpCgH~~~C~~C~~~~~~~~~~~CP~CR~~i~~  207 (214)
                      +.+++..|+||++-+++++.++|||.| |..|+..+....+..||.||.++..
T Consensus         3 eiP~~l~CpIc~~l~~dPv~~~cGhtf-c~~ci~~~l~~~~~~cP~c~~~l~~   54 (80)
T d2c2la2           3 DIPDYLCGKISFELMREPCITPSGITY-DRKDIEEHLQRVGHFNPVTRSPLTQ   54 (80)
T ss_dssp             CCCSTTBCTTTCSBCSSEEECSSCCEE-ETTHHHHHHHHTCSSCTTTCCCCCG
T ss_pred             CCCccccCcCcCchhhhhcccCCcCee-cHHHHHHHHhcCCccCCCccccccc
Confidence            456788999999999999999999999 9999999986556689999998864

>d1t1ha_ g.44.1.2 (A:) E3 ubiquitin ligase PUB14 {Thale-cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: U-box
domain: E3 ubiquitin ligase PUB14
species: Thale-cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=99.13  E-value=1.4e-11  Score=81.94  Aligned_cols=52  Identities=15%  Similarity=0.217  Sum_probs=46.6

Q ss_pred             CCccccccccccccccceEEccCCCccccHhhHHHhhcCCCcccccccccccc
Q 028047          155 DIPDGQLCVVCLTRRRISAFNPCGHLVCCRRCAISVEREASPKCPVCRMTVRS  207 (214)
Q Consensus       155 ~~~~~~~C~IC~~~~~~~~~lpCgH~~~C~~C~~~~~~~~~~~CP~CR~~i~~  207 (214)
                      +.+++..|+||++.+++++.++|||.| |..|+..|.......||.|+.++..
T Consensus         4 eiP~~l~CpIc~~~m~dPV~~~cgh~f-c~~ci~~~~~~~~~~cP~~~~~l~~   55 (78)
T d1t1ha_           4 EFPEYFRCPISLELMKDPVIVSTGQTY-ERSSIQKWLDAGHKTCPKSQETLLH   55 (78)
T ss_dssp             CCSSSSSCTTTSCCCSSEEEETTTEEE-EHHHHHHHHTTTCCBCTTTCCBCSS
T ss_pred             CCCccCCCcCcCchhhCceEccCCCcc-hHHHHHHHHHHCCCCCCcccccCCc
Confidence            466788999999999999999999999 9999999987656689999999865

>d1iyma_ g.44.1.1 (A:) EL5 RING-H2 domain {Rice (Oryza sativa) [TaxId: 4530]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: EL5 RING-H2 domain
species: Rice (Oryza sativa) [TaxId: 4530]

Probab=99.13  E-value=1.2e-11  Score=76.74  Aligned_cols=47  Identities=36%  Similarity=0.712  Sum_probs=37.7

Q ss_pred             ccccccccccccccc---eEEc-cCCCccccHhhHHHhhcCCCcccccccccc
Q 028047          157 PDGQLCVVCLTRRRI---SAFN-PCGHLVCCRRCAISVEREASPKCPVCRMTV  205 (214)
Q Consensus       157 ~~~~~C~IC~~~~~~---~~~l-pCgH~~~C~~C~~~~~~~~~~~CP~CR~~i  205 (214)
                      +++..|+||++...+   +..+ +|||.| |..|+.+|.+. +..||+||++|
T Consensus         3 ed~~~C~ICl~~~~~~~~~~~l~~C~H~F-h~~Ci~~Wl~~-~~~CP~CR~~i   53 (55)
T d1iyma_           3 DDGVECAVCLAELEDGEEARFLPRCGHGF-HAECVDMWLGS-HSTCPLCRLTV   53 (55)
T ss_dssp             CCSCCCTTTCCCCCTTSCCEECSSSCCEE-CTTHHHHTTTT-CCSCSSSCCCS
T ss_pred             CCCCCCeEECccccCCCEEEEeCCCCCcc-cHHHHHHHHHh-CCcCCCCCCEe
Confidence            345579999998754   4445 599999 79999999864 56899999986

>d1ur6b_ g.44.1.1 (B:) Not-4 N-terminal RING finger domain {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: Not-4 N-terminal RING finger domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.13  E-value=7.2e-12  Score=76.86  Aligned_cols=46  Identities=26%  Similarity=0.616  Sum_probs=37.4

Q ss_pred             ccccccccccc----eEEccCCCccccHhhHHHhhcCCCcccccccccccc
Q 028047          161 LCVVCLTRRRI----SAFNPCGHLVCCRRCAISVEREASPKCPVCRMTVRS  207 (214)
Q Consensus       161 ~C~IC~~~~~~----~~~lpCgH~~~C~~C~~~~~~~~~~~CP~CR~~i~~  207 (214)
                      .|+||++....    +..++|||.| |..|+.+|....+..||+||+++..
T Consensus         2 eCpICl~~~~~~~~~~~~~~CgH~~-c~~C~~~w~~~~~~~CP~CR~~~~~   51 (52)
T d1ur6b_           2 ECPLCMEPLEIDDINFFPCTCGYQI-CRFCWHRIRTDENGLCPACRKPYPE   51 (52)
T ss_dssp             EETTTTEECCGGGTTCCSSSSSCCC-CHHHHHHHTTTSCCBCTTTCCBCSC
T ss_pred             CCcCCChhhhCCCceEEecCCCCcc-chHHHHHHHhhcCCCCCccCCcCCC
Confidence            69999997532    3456899999 8999999987656689999999763

>d1jm7a_ g.44.1.1 (A:) brca1 RING domain {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: brca1 RING domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.07  E-value=8.1e-12  Score=87.49  Aligned_cols=49  Identities=20%  Similarity=0.657  Sum_probs=41.6

Q ss_pred             ccccccccccccccceEEccCCCccccHhhHHHhhcCC--Cccccccccccc
Q 028047          157 PDGQLCVVCLTRRRISAFNPCGHLVCCRRCAISVEREA--SPKCPVCRMTVR  206 (214)
Q Consensus       157 ~~~~~C~IC~~~~~~~~~lpCgH~~~C~~C~~~~~~~~--~~~CP~CR~~i~  206 (214)
                      .+...|+||++.+.+++.+||||.| |..|+..|+...  ...||+||.++.
T Consensus        19 ~~~l~CpIC~~~~~~pv~~~CgH~f-C~~Ci~~~~~~~~~~~~CP~Cr~~~~   69 (103)
T d1jm7a_          19 QKILECPICLELIKEPVSTKCDHIF-CKFCMLKLLNQKKGPSQCPLCKNDIT   69 (103)
T ss_dssp             HHHTSCSSSCCCCSSCCBCTTSCCC-CSHHHHHHHHSSSSSCCCTTTSCCCC
T ss_pred             ccCcCCCccCchhCCeEEcCCCCch-hhHHHHHHHHHCCCCCcCcCCCCcCC
Confidence            3456799999999999999999999 999999987532  347999999875

>d2baya1 g.44.1.2 (A:1-56) Pre-mRNA splicing factor Prp19 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: U-box
domain: Pre-mRNA splicing factor Prp19
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.00  E-value=4.5e-11  Score=74.31  Aligned_cols=49  Identities=12%  Similarity=0.229  Sum_probs=41.6

Q ss_pred             ccccccccccceEEcc-CCCccccHhhHHHhhcCCCcccccccccccc--eEEe
Q 028047          161 LCVVCLTRRRISAFNP-CGHLVCCRRCAISVEREASPKCPVCRMTVRS--SMRI  211 (214)
Q Consensus       161 ~C~IC~~~~~~~~~lp-CgH~~~C~~C~~~~~~~~~~~CP~CR~~i~~--~~~i  211 (214)
                      .|+||++...+++.++ |||.| |.+|+.+|... +..||+||++++.  ++++
T Consensus         2 ~C~Ic~~~~~~Pv~~~~cGh~f-c~~cI~~~l~~-~~~CP~c~~~l~~~dLipi   53 (56)
T d2baya1           2 LCAISGKVPRRPVLSPKSRTIF-EKSLLEQYVKD-TGNDPITNEPLSIEEIVEI   53 (56)
T ss_dssp             CCTTTCSCCSSEEEETTTTEEE-EHHHHHHHHHH-HSBCTTTCCBCCGGGCEEC
T ss_pred             CCccCCchHHhcCccCCCCCcc-cHHHHHHHHhh-ccCCCccCCcCCHHhceeC
Confidence            6999999999999885 99999 89999999864 4589999998864  4444

>d1jm7b_ g.44.1.1 (B:) bard1 RING domain {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: bard1 RING domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.93  E-value=5e-11  Score=82.44  Aligned_cols=48  Identities=23%  Similarity=0.497  Sum_probs=40.5

Q ss_pred             CccccccccccccccceEEc-cCCCccccHhhHHHhhcCCCcccccccccccc
Q 028047          156 IPDGQLCVVCLTRRRISAFN-PCGHLVCCRRCAISVEREASPKCPVCRMTVRS  207 (214)
Q Consensus       156 ~~~~~~C~IC~~~~~~~~~l-pCgH~~~C~~C~~~~~~~~~~~CP~CR~~i~~  207 (214)
                      +.+...|+||++.+.+++.+ +|||.| |..|+.+|..   ..||.||.++..
T Consensus        19 l~~~l~C~IC~~~~~~pv~~~~CgH~f-C~~Ci~~~~~---~~CP~Cr~~~~~   67 (97)
T d1jm7b_          19 LEKLLRCSRCTNILREPVCLGGCEHIF-CSNCVSDCIG---TGCPVCYTPAWI   67 (97)
T ss_dssp             HHHTTSCSSSCSCCSSCBCCCSSSCCB-CTTTGGGGTT---TBCSSSCCBCSC
T ss_pred             hhhcCCCccCCchhhcCceeCCCCCch-hHHHHHHHHh---ccccccCCcCch
Confidence            34566899999999999875 899999 8999999973   479999988753

>d1v87a_ g.44.1.1 (A:) Deltex protein 2 RING-H2 domain {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: Deltex protein 2 RING-H2 domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.79  E-value=1.2e-09  Score=77.46  Aligned_cols=47  Identities=19%  Similarity=0.619  Sum_probs=36.4

Q ss_pred             cccccccccccc------------------ceEEccCCCccccHhhHHHhhcC----CCccccccccccc
Q 028047          159 GQLCVVCLTRRR------------------ISAFNPCGHLVCCRRCAISVERE----ASPKCPVCRMTVR  206 (214)
Q Consensus       159 ~~~C~IC~~~~~------------------~~~~lpCgH~~~C~~C~~~~~~~----~~~~CP~CR~~i~  206 (214)
                      +..|+||++...                  ...+++|||.| |..|+..|...    ...+||+||+.+.
T Consensus        25 ~~~C~IC~e~l~~~~~~~~~~~~~~~~~~~~~~~~~CgH~F-H~~Ci~~Wl~~~~~~~~~~CP~CR~~~~   93 (114)
T d1v87a_          25 EEDCIICMEKLAVASGYSDMTDSKALGPMVVGRLTKCSHAF-HLLCLLAMYCNGNKDGSLQCPSCKTIYG   93 (114)
T ss_dssp             SCEETTTTEETTSCCSTTTTCCCSSSCSSCCEEESSSCCEE-CHHHHHHHHHHTCCSSCCBCTTTCCBSS
T ss_pred             cccccchhheecccccccccccccccccccceEECCCCChh-hHHHHHHHHHhcCcCCCCccccccchhc
Confidence            347999998753                  24678999999 79999999852    1347999998764

>d3dplr1 g.44.1.1 (R:19-106) RIGG-box protein 1 (RBX1) of SCF ubiquitin ligase complex {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: RIGG-box protein 1 (RBX1) of SCF ubiquitin ligase complex
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.75  E-value=2.2e-09  Score=72.61  Aligned_cols=33  Identities=18%  Similarity=0.348  Sum_probs=28.4

Q ss_pred             eEEccCCCccccHhhHHHhhcCCCccccccccccc
Q 028047          172 SAFNPCGHLVCCRRCAISVEREASPKCPVCRMTVR  206 (214)
Q Consensus       172 ~~~lpCgH~~~C~~C~~~~~~~~~~~CP~CR~~i~  206 (214)
                      ++.++|||.| +..|+.+|.+. +..||+||+++.
T Consensus        52 ~~~~~C~H~F-H~~Ci~~Wl~~-~~~CP~CR~~~~   84 (88)
T d3dplr1          52 VAWGVCNHAF-HFHCISRWLKT-RQVCPLDNREWE   84 (88)
T ss_dssp             EEEETTSCEE-EHHHHHHHHTT-CSBCSSSCSBCC
T ss_pred             eEEccccCcc-cHHHHHHHHHH-CCcCCCCCCccc
Confidence            5678999999 79999999865 468999999875

>d1wgma_ g.44.1.2 (A:) Ubiquitin conjugation factor E4A {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: U-box
domain: Ubiquitin conjugation factor E4A
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.75  E-value=4.4e-09  Score=72.54  Aligned_cols=53  Identities=17%  Similarity=-0.001  Sum_probs=45.3

Q ss_pred             cCCCccccccccccccccceEEccCCC-ccccHhhHHHhhcCCCcccccccccccc
Q 028047          153 AGDIPDGQLCVVCLTRRRISAFNPCGH-LVCCRRCAISVEREASPKCPVCRMTVRS  207 (214)
Q Consensus       153 ~~~~~~~~~C~IC~~~~~~~~~lpCgH-~~~C~~C~~~~~~~~~~~CP~CR~~i~~  207 (214)
                      ..+.+++..|+||.+.++++|.+|||| .| |+.|+.+|... +..||+||.++..
T Consensus        16 ~~~~P~~f~CPI~~~lm~dPV~~~~~~~ty-~r~~I~~~l~~-~~~~P~~~~~l~~   69 (98)
T d1wgma_          16 YADACDEFLDPIMSTLMCDPVVLPSSRVTV-DRSTIARHLLS-DQTDPFNRSPLTM   69 (98)
T ss_dssp             CCSCCTTTBCTTTCSBCSSEEECTTTCCEE-EHHHHHHHTTT-SCBCTTTCSBCCT
T ss_pred             hcCCcHHhCCcCchhHHHHHHhcccccchh-hHHHHHHHHHh-cCCcccccccccc
Confidence            445677899999999999999999886 67 99999999854 5689999999864

>d1vyxa_ g.44.1.3 (A:) IE1B protein (ORF K3), N-terminal domain {Kaposi's sarcoma-associated herpesvirus, KSHV, HHV8 [TaxId: 37296]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: Variant RING domain
domain: IE1B protein (ORF K3), N-terminal domain
species: Kaposi's sarcoma-associated herpesvirus, KSHV, HHV8 [TaxId: 37296]

Probab=98.59  E-value=6.7e-09  Score=65.05  Aligned_cols=48  Identities=23%  Similarity=0.538  Sum_probs=39.1

Q ss_pred             cccccccccccccceEEccCC-----CccccHhhHHHhhc-CCCccccccccccc
Q 028047          158 DGQLCVVCLTRRRISAFNPCG-----HLVCCRRCAISVER-EASPKCPVCRMTVR  206 (214)
Q Consensus       158 ~~~~C~IC~~~~~~~~~lpCg-----H~~~C~~C~~~~~~-~~~~~CP~CR~~i~  206 (214)
                      +...|.||++...+....||+     |.| +..|+..|.. +.+..||+||+++.
T Consensus         5 d~~~C~IC~~~~~~~~~~~c~c~~c~h~~-H~~Cl~~W~~~~~~~~CP~Cr~~~~   58 (60)
T d1vyxa_           5 DVPVCWICNEELGNERFRACGCTGELENV-HRSCLSTWLTISRNTACQICGVVYN   58 (60)
T ss_dssp             SCCEETTTTEECSCCCCCSCCCSSGGGSC-CHHHHHHHHHHHTCSBCTTTCCBCC
T ss_pred             CCCCCccCCccCCCceeEecccCCCCCEE-cHHHHHHHHhhCCCCCCcccCCeee
Confidence            456899999988887777775     999 7999999974 34558999999875

>d1wima_ g.44.1.1 (A:) UbcM4-interacting protein 4 (KIAA0161) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: UbcM4-interacting protein 4 (KIAA0161)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.92  E-value=2.6e-06  Score=57.50  Aligned_cols=44  Identities=20%  Similarity=0.498  Sum_probs=32.4

Q ss_pred             cccccccccccc--c-eEEccCCCccccHhhHHHhhc-------CCCcccccccc
Q 028047          159 GQLCVVCLTRRR--I-SAFNPCGHLVCCRRCAISVER-------EASPKCPVCRM  203 (214)
Q Consensus       159 ~~~C~IC~~~~~--~-~~~lpCgH~~~C~~C~~~~~~-------~~~~~CP~CR~  203 (214)
                      ...|+||++...  + +.+++|||.| |..|+..+..       .....||.|+-
T Consensus         5 ~~~C~IC~~~~~~~~~~~~~~C~H~f-C~~Cl~~~~~~~i~~~~~~~i~CP~~~C   58 (94)
T d1wima_           5 SSGCKLCLGEYPVEQMTTIAQCQCIF-CTLCLKQYVELLIKEGLETAISCPDAAC   58 (94)
T ss_dssp             BCCCSSSCCCCBGGGEEEETTTTEEE-EHHHHHHHHHHHHHHCSCCCEECSCTTC
T ss_pred             CCcCccCCCcccCCceEEECCCCCEe-CCcCHHHHHHHHHhcCCccccCCcCCCC
Confidence            457999998764  3 5567899999 9999998764       11236998654

>d2cs3a1 g.44.1.3 (A:8-87) Protein c14orf4 (KIAA1865) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: Variant RING domain
domain: Protein c14orf4 (KIAA1865)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.88  E-value=0.027  Score=34.80  Aligned_cols=33  Identities=24%  Similarity=0.571  Sum_probs=28.2

Q ss_pred             ccccccccccccceEEccC----CCccccHhhHHHhhc
Q 028047          159 GQLCVVCLTRRRISAFNPC----GHLVCCRRCAISVER  192 (214)
Q Consensus       159 ~~~C~IC~~~~~~~~~lpC----gH~~~C~~C~~~~~~  192 (214)
                      ...|.+|.+...+.-|+.|    +|.| |..|.....+
T Consensus         8 ~l~CtlC~erLEdtHFVQCPsv~~HkF-CFpCsr~sik   44 (80)
T d2cs3a1           8 PLCCTICHERLEDTHFVQCPSVPSHKF-CFPCSRESIK   44 (80)
T ss_dssp             SCCCSSSCSCCSSTTSEECSSCSSCEE-CHHHHHHHHH
T ss_pred             ceeeeeehhhhcCCceEeCCCCcCCce-eccccHHHHH
Confidence            4689999999999999988    5999 9999987543

>d2vsla1 g.52.1.1 (A:250-345) BIR domains of XIAP {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Inhibitor of apoptosis (IAP) repeat
superfamily: Inhibitor of apoptosis (IAP) repeat
family: Inhibitor of apoptosis (IAP) repeat
domain: BIR domains of XIAP
species: Human (Homo sapiens) [TaxId: 9606]

Probab=87.92  E-value=0.0034  Score=41.89  Aligned_cols=56  Identities=14%  Similarity=0.197  Sum_probs=43.3

Q ss_pred             ceeecCCCCCCeeeeccCHHHHHHHhhhhhhhhhhhhhhhchhHHHHHHHHHHHHHH----HHHHHHHHHH
Q 028047           65 IPEIKSCKDLPYFLSEKTKDLMVVDLVNRSKILFWSGIVLGSLSIGILGYAIVRNWN----RWKDRQQRMS  131 (214)
Q Consensus        65 ~~~l~~~~~~p~~ls~~~~d~Li~~l~~~~~~~~~~~i~~~~~~~~~~~~~~~r~~~----~~~~~~~~~~  131 (214)
                      ..||+++.+||+-+   +.    .+|+.+  +|+|.+  .++.+.|+.|...+++|.    .|++|+++++
T Consensus        17 ~~Rl~TF~~Wp~~~---~~----~~LA~a--GFyytg--~~D~v~Cf~C~~~l~~W~~~D~P~~eH~~~~p   76 (96)
T d2vsla1          17 EARIFTFGTWIYSV---NK----EQLARA--GFYALG--EGDKVKCFHCGGGLTDWKPSEDPWEQHAKWYP   76 (96)
T ss_dssp             HHHHHTTTTCCSSS---CH----HHHHHT--TEEECS--STTCEEETTTCCEEESCCTTCCHHHHHHHHCT
T ss_pred             HHHHHHHccCCCCC---CH----HHHHHh--CCEEcC--CCCEEEeccCCCEeCCCCCCCCHHHHHHHHCc
Confidence            34889999999643   22    345555  899998  688888999988899997    5999998754

>d2i3ha1 g.52.1.1 (A:78-167) BIR-containing protein 7 (ML-IAP, livin) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Inhibitor of apoptosis (IAP) repeat
superfamily: Inhibitor of apoptosis (IAP) repeat
family: Inhibitor of apoptosis (IAP) repeat
domain: BIR-containing protein 7 (ML-IAP, livin)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=87.73  E-value=0.0024  Score=42.17  Aligned_cols=58  Identities=16%  Similarity=0.252  Sum_probs=44.0

Q ss_pred             ceeecCCCCCCeeeeccCHHHHHHHhhhhhhhhhhhhhhhchhHHHHHHHHHHHHHH----HHHHHHHHHH
Q 028047           65 IPEIKSCKDLPYFLSEKTKDLMVVDLVNRSKILFWSGIVLGSLSIGILGYAIVRNWN----RWKDRQQRMS  131 (214)
Q Consensus        65 ~~~l~~~~~~p~~ls~~~~d~Li~~l~~~~~~~~~~~i~~~~~~~~~~~~~~~r~~~----~~~~~~~~~~  131 (214)
                      ..||+++.+||..... +    ..+|+.+  +|+|.+  .++.+.|+.|...+++|.    .|++|+++.+
T Consensus        11 ~~Rl~TF~~Wp~~~~~-~----~~~LA~a--GFyytg--~~D~v~C~~C~~~l~~W~~~Ddp~~eH~r~~p   72 (90)
T d2i3ha1          11 ELRLASFYDWPLTAEV-P----PELLAAA--GFFHTG--HQDKVRCFFCYGGLQSWKRGDDPWTEHAKWFP   72 (90)
T ss_dssp             HHHHHTTTTCSCTTTS-C----HHHHHHT--TEEECS--STTCEEETTTCCEEECCCTTCCHHHHHHHHCT
T ss_pred             HHHHHHHHhCCCCCCC-C----HHHHHhc--CCEECC--CCCEEEeccCCCEeCCCCCCCCHHHHHHHHCc
Confidence            4588999999864332 2    2556666  899988  678888999988889997    5999998854

>d3d9ta1 g.52.1.1 (A:260-346) 2MIHB/C-IAP-1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Inhibitor of apoptosis (IAP) repeat
superfamily: Inhibitor of apoptosis (IAP) repeat
family: Inhibitor of apoptosis (IAP) repeat
domain: 2MIHB/C-IAP-1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=85.70  E-value=0.0022  Score=42.04  Aligned_cols=58  Identities=10%  Similarity=0.201  Sum_probs=43.3

Q ss_pred             ceeecCCCCCCeeeeccCHHHHHHHhhhhhhhhhhhhhhhchhHHHHHHHHHHHHHH----HHHHHHHHHH
Q 028047           65 IPEIKSCKDLPYFLSEKTKDLMVVDLVNRSKILFWSGIVLGSLSIGILGYAIVRNWN----RWKDRQQRMS  131 (214)
Q Consensus        65 ~~~l~~~~~~p~~ls~~~~d~Li~~l~~~~~~~~~~~i~~~~~~~~~~~~~~~r~~~----~~~~~~~~~~  131 (214)
                      ..||+++.+||.-... +    ..+|+.+  +|+|.+  .++.+.|+.|...+++|.    +|.+|+++.+
T Consensus         5 ~~Rl~TF~~Wp~~~~~-~----~~~LA~a--GFyytg--~~D~v~C~~C~~~l~~W~~~Ddp~~eH~~~~p   66 (87)
T d3d9ta1           5 AARMRTFMYWPSSVPV-Q----PEQLASA--GFYYVG--RNDDVKCFCCDGGLRCWESGDDPWVEHAKWFP   66 (87)
T ss_dssp             HHHHHGGGGCCTTSSS-C----HHHHHHT--TEEECS--STTCEEETTTCCEEECCCTTCCHHHHHHHHCT
T ss_pred             HHHHHHHhcCCCCCCc-C----HHHHHHc--CCEECC--CCCEEEeCcCCCEecCcCCCCcchHHHHHHCc
Confidence            3578889899854332 2    2455555  899988  678888999988889997    6999998854

>d1i3oe_ g.52.1.1 (E:) BIR domains of XIAP {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Inhibitor of apoptosis (IAP) repeat
superfamily: Inhibitor of apoptosis (IAP) repeat
family: Inhibitor of apoptosis (IAP) repeat
domain: BIR domains of XIAP
species: Human (Homo sapiens) [TaxId: 9606]

Probab=85.46  E-value=0.0046  Score=42.32  Aligned_cols=58  Identities=19%  Similarity=0.458  Sum_probs=43.6

Q ss_pred             ceeecCCCCCCeeeeccCHHHHHHHhhhhhhhhhhhhhhhchhHHHHHHHHHHHHHH----HHHHHHHHHH
Q 028047           65 IPEIKSCKDLPYFLSEKTKDLMVVDLVNRSKILFWSGIVLGSLSIGILGYAIVRNWN----RWKDRQQRMS  131 (214)
Q Consensus        65 ~~~l~~~~~~p~~ls~~~~d~Li~~l~~~~~~~~~~~i~~~~~~~~~~~~~~~r~~~----~~~~~~~~~~  131 (214)
                      ..||+++.+||..... +.    .+|+.+  +|+|.+  .++.+.|+.|...+++|+    .|.+|+++.+
T Consensus        38 e~Rl~TF~~Wp~~~~~-~~----~~LA~a--GFyytg--~~D~v~Cf~C~~~l~~W~~~DdP~~eH~r~sP   99 (111)
T d1i3oe_          38 EARLKSFQNWPDYAHL-TP----RELASA--GLYYTG--IGDQVQCFACGGKLKNWEPGDRAWSEHRRHFP   99 (111)
T ss_dssp             HHHHTTCTTCCSSCSS-CH----HHHHHT--TEEEEE--ETTEEEETTTCCEECCCCTTCCHHHHHHHHCT
T ss_pred             HHHHHHHHhCCCccCc-CH----HHHHHc--CCEECC--CCCeEEeCcCCCEeCCCCCCCCHHHHHHHHCc
Confidence            4588999999854332 32    445655  899988  588888999988899997    5999988743

>d1jd5a_ g.52.1.1 (A:) BIR domains of DIAP1 {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Small proteins
fold: Inhibitor of apoptosis (IAP) repeat
superfamily: Inhibitor of apoptosis (IAP) repeat
family: Inhibitor of apoptosis (IAP) repeat
domain: BIR domains of DIAP1
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=84.56  E-value=0.0027  Score=43.16  Aligned_cols=58  Identities=17%  Similarity=0.353  Sum_probs=43.5

Q ss_pred             ceeecCCCCCCeeeeccCHHHHHHHhhhhhhhhhhhhhhhchhHHHHHHHHHHHHHH----HHHHHHHHHH
Q 028047           65 IPEIKSCKDLPYFLSEKTKDLMVVDLVNRSKILFWSGIVLGSLSIGILGYAIVRNWN----RWKDRQQRMS  131 (214)
Q Consensus        65 ~~~l~~~~~~p~~ls~~~~d~Li~~l~~~~~~~~~~~i~~~~~~~~~~~~~~~r~~~----~~~~~~~~~~  131 (214)
                      ..||+++.+||.-.. .+    +.+|+.+  +|+|.+  .++.+.|+.|...+++|.    .|++|+++++
T Consensus        14 ~~Rl~TF~~wp~~~~-~~----~~~LA~a--GFyytg--~~D~v~Cf~C~~~l~~W~~~D~p~~eH~~~~P   75 (105)
T d1jd5a_          14 TARLRTFEAWPRNLK-QK----PHQLAEA--GFFYTG--VGDRVRCFSCGGGLMDWNDNDEPWEQHALWLS   75 (105)
T ss_dssp             HHHHHHGGGCCTTCS-SC----HHHHHHT--TEEECS--STTCEEETTTCCEEECCCTTCCHHHHHHHHCT
T ss_pred             HHHHHHHHhCCCCCC-cC----HHHHHHc--CCEECC--CCCEEEeCccCCCccCCCCCCCHHHHHHHHCc
Confidence            357888989985333 22    3456655  899998  577788999988899997    5999998854