Citrus Sinensis ID: 028062

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210----
Protein Sequence
MGKYQLASSFILLLNLGTLLTSLACDCSNNPPPPPASKTPNCPPPPSSPSPKTPPPPPPFVKSPPPPPPVVKSAPPPPPPVAKSPPPPPPVVKSPPPPIVKPPPPNGPSPKSPPPPSVRYPPPPKQQTCPIDALKLGACVDVLGGLIHIGLGDSAKEKCCPLLQGLADLDAAVCLCTAIRLKALNLINLLVPISLQVLVNDCGKYPPAGFQCPA
Secondary Structure (PSIPRED)
ccccHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHcccEEEcccccccccccccccccccHHHHHHHHHHHHHHHccccccccHHHHHHHHHHccccccccccccc
Secondary Structure Prediction (SSPRO)
ccHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHEHHHHcccEEEEEcccccccccHHHHHHHcHHHHHHHHHHHHHHHHcEEEccccHHHHHHHHHccccccccccccc
Coil and Loop (DISEMBL)
MGKYQLASSFILLLNLGTLLTslacdcsnnpppppasktpncppppsspspktppppppfvksppppppvvksappppppvaksppppppvvksppppivkppppngpspksppppsvryppppkqqtcpidalklgACVDVLGGLIhiglgdsakekccpllqgLADLDAAVCLCTAIRLKALNLINLLVPISLQVLVndcgkyppagfqcpa
Flexible Loop (DISEMBL)
MGKYQLASSFILLLNLGTLLTSLACDCSNNPPPPPASKTPNCPPPPSSPSPKTPPPPPPFVKSPPPPPPVVKSAPPPPPPVAKSPPPPPPVVKSPPPPIVKPPPPNGPSPKSPPPPSVRYPPPPKQQTCPIDALKLGACVDVLGGLIHIGLGDSAKEKCCPLLQGLADLDAAVCLCTAIRLKALNLINLLVPISLQVLVNDCGKYPPAGFQCPA
Low Complexity Region (SEG)
MGKYQLASSFIlllnlgtlltslACDCSNNpppppasktpncppppsspspktppppppfvksppppppvvksappppppvaksppppppvvksppppivkppppngpspksppppsvryppppKQQTCPIDALKLGACVDVLGGLIHIGLGDSAKEKCCPLLQGLADLDAAVCLCTAIRLKALNLINLLVPISLQVLVNDCGKYPPAGFQCPA
Disordered region (IsUnstruct)
********************************************************************************************************************************CPIDALKLGACVDVLGGLIHIGLGDSAKEKCCPLLQGLADLDAAVCLCTAIRLKALNLINLLVPISLQVLVNDCGKYPPA******
Disordered Region (DISOPRED)
******A**FILLLNLGTLLTSLACD*********************SPSPKTPPPPPPFVKSPPPPPP********************PV**S**********************************CPIDALKLGACVDVLGGLIHIGLGDSAKEKCCPLLQGLADLDAAVCLCTAIRLKALNLINLLVPISLQVLVNDCGKYPPAGFQCP*
Disordered Region (DISEMBL)
MGKYQLASSFILLLNLGTLLTSLACDCSNN**************************************************************KSPPPPIVKPP***************RYPPPPKQQTCPIDALKLGACVDVLGGLIHIGLGDSAKEKCCPLLQGLADLDAAVCLCTAIRLKALNLINLLVPISLQVLVNDCGKYPPAGFQCPA
Disordered Region (DISPRO)
*GKYQLASSFILLLNLGTLLTSLACDCSNNPPPPPASKTPNCPPPPSSPSPKTPPPPPPFVKSPPPPPPVVKSAPPPPPPVAKSPPPPPPVVKSPP*PIVKPPPPNGPSPKSPPPPSV********QTCPIDALKLGACVDVLGGLIHIGLGDSAKEKCCPLLQGLADLDAAVCLCTAIRLKALNLINLLVPISLQVLVNDCGKYPPAGFQCPA
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHoooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
SSSSSSSSSSSSSSSSSSSSSSSSoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
SSSSSSSSSSSSSSSSSSSSSSSSSooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MGKYQLASSFILLLNLGTLLTSLACDCSNNPPPPPASKTPNCPPPPSSPSPKTPPPPPPFVKSPPPPPPVVKSAPPPPPPVAKSPPPPPPVVKSPPPPIVKPPPPNGPSPKSPPPPSVRYPPPPKQQTCPIDALKLGACVDVLGGLIHIGLGDSAKEKCCPLLQGLADLDAAVCLCTAIRLKALNLINLLVPISLQVLVNDCGKYPPAGFQCPA
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	214	2.2.26 [Sep-21-2011]
Q00451	346	36.4 kDa proline-rich pro	N/A	no	0.411	0.254	0.764	2e-26
Q01595	129	Cortical cell-delineating	N/A	no	0.392	0.651	0.545	3e-16
Q8RW93	128	Putative lipid-binding pr	no	no	0.425	0.710	0.468	6e-15
P14009	137	14 kDa proline-rich prote	N/A	no	0.392	0.613	0.505	5e-14

>sp|Q00451|PRF1_SOLLC 36.4 kDa proline-rich protein OS=Solanum lycopersicum GN=TPRP-F1 PE=2 SV=1

 Score =  119 bits (298), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 68/89 (76%), Positives = 79/89 (88%), Gaps = 1/89 (1%)

Query: 126 QQTCPIDALKLGACVDVLGGLIHIGLGDSAKEKCCPLLQGLADLDAAVCLCTAIRLKALN 185
           Q TCPIDALKLGACVDVLGGLIHIG+G SAK+ CCPLL GL DLDAA+CLCT IRLK LN
Sbjct: 258 QPTCPIDALKLGACVDVLGGLIHIGIGGSAKQTCCPLLGGLVDLDAAICLCTTIRLKLLN 317

Query: 186 LINLLVPISLQVLVNDCGKYPPAGFQCPA 214
            IN+++PI+LQVL++DCGKYPP  F+CP+
Sbjct: 318 -INIILPIALQVLIDDCGKYPPKDFKCPS 345

Solanum lycopersicum (taxid: 4081)

>sp|Q01595|CCDP_MAIZE Cortical cell-delineating protein OS=Zea mays PE=2 SV=1

 Score = 85.5 bits (210), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 48/88 (54%), Positives = 60/88 (68%), Gaps = 4/88 (4%)

Query: 126 QQTCPIDALKLGACVDVLGGLIHIGLGDSAKEKCCPLLQGLADLDAAVCLCTAIRLKALN 185
              CPIDALKL  C  VLG L+ +GL     E+CCPLL+GL DLDAA+CLCTAI+   L 
Sbjct: 45  HGRCPIDALKLKVCAKVLG-LVKVGL--PQYEQCCPLLEGLVDLDAALCLCTAIKANVLG 101

Query: 186 LINLLVPISLQVLVNDCGKYPPAGFQCP 213
            I+L VP+SL  ++N+CG+  P  F CP
Sbjct: 102 -IHLNVPLSLNFILNNCGRICPEDFTCP 128

Delineates a novel subset of developing cortical cells. It is probably involved in some aspect of transport of molecules to or from the vasculature.

Zea mays (taxid: 4577)

>sp|Q8RW93|LBP65_ARATH Putative lipid-binding protein At4g00165 OS=Arabidopsis thaliana GN=At4g00165 PE=2 SV=1

 Score = 80.9 bits (198), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 44/94 (46%), Positives = 60/94 (63%), Gaps = 3/94 (3%)

Query: 121 PPPPKQQT--CPIDALKLGACVDVLGGLIHIGLGDSAKEKCCPLLQGLADLDAAVCLCTA 178
           PPP KQ T  CP D LK G C   L GL+   +G    ++CC L++GLAD +AAVCLCTA
Sbjct: 36  PPPAKQATTKCPRDTLKFGVCGSWL-GLVSEVIGTPPSQECCSLIKGLADFEAAVCLCTA 94

Query: 179 IRLKALNLINLLVPISLQVLVNDCGKYPPAGFQC 212
           ++   L +  + +P++L +L+N CGK  P GF C
Sbjct: 95  LKTSILGVAPVKIPVALTLLLNSCGKNVPQGFVC 128

Arabidopsis thaliana (taxid: 3702)

>sp|P14009|14KD_DAUCA 14 kDa proline-rich protein DC2.15 OS=Daucus carota PE=2 SV=1

 Score = 77.8 bits (190), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 43/85 (50%), Positives = 58/85 (68%), Gaps = 1/85 (1%)

Query: 129 CPIDALKLGACVDVLGGLIHIGLGDSAKEKCCPLLQGLADLDAAVCLCTAIRLKALNLIN 188
           CP DALKLG C DVL  + ++ +G      CC LL+GL +L+AAVCLCTAI+   L   N
Sbjct: 54  CPRDALKLGVCADVLNLVHNVVIGSPPTLPCCSLLEGLVNLEAAVCLCTAIKANILG-KN 112

Query: 189 LLVPISLQVLVNDCGKYPPAGFQCP 213
           L +PI+L +++N+CGK  P GF+C 
Sbjct: 113 LNLPIALSLVLNNCGKQVPNGFECT 137


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.315    0.141    0.470 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 116,521,090
Number of Sequences: 539616
Number of extensions: 7890646
Number of successful extensions: 361035
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 3930
Number of HSP's successfully gapped in prelim test: 2446
Number of HSP's that attempted gapping in prelim test: 67580
Number of HSP's gapped (non-prelim): 94010
length of query: 214
length of database: 191,569,459
effective HSP length: 113
effective length of query: 101
effective length of database: 130,592,851
effective search space: 13189877951
effective search space used: 13189877951
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 59 (27.3 bits)

May be connected with the initiation of embryogenesis or with the metabolic changes produced by the removal of auxins.

Daucus carota (taxid: 4039)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	214
145332667	1480	bifunctional inhibitor/lipid transfer pr	0.401	0.058	0.693	2e-33
297835204	722	predicted protein [Arabidopsis lyrata su	0.411	0.121	0.7	1e-31
15022163	407	putative proline-rich protein [Solanum p	0.406	0.213	0.741	3e-31
359475712	310	PREDICTED: uncharacterized protein LOC10	0.406	0.280	0.752	5e-31
449456667	254	PREDICTED: uncharacterized protein LOC10	0.406	0.342	0.741	7e-31
449518449	143	PREDICTED: 36.4 kDa proline-rich protein	0.406	0.608	0.741	8e-31
118486411	179	unknown [Populus trichocarpa]	0.406	0.486	0.741	5e-30
224104875	179	predicted protein [Populus trichocarpa]	0.406	0.486	0.741	6e-30
297804748	451	hypothetical protein ARALYDRAFT_493374 [	0.406	0.192	0.755	2e-29
224086363	85	predicted protein [Populus trichocarpa]	0.397	1.0	0.747	5e-29

>gi|145332667|ref|NP_001078199.1| bifunctional inhibitor/lipid transfer protein/seed storage protein-like protein [Arabidopsis thaliana] gi|11994733|dbj|BAB03062.1| unnamed protein product [Arabidopsis thaliana] gi|332643072|gb|AEE76593.1| bifunctional inhibitor/lipid transfer protein/seed storage protein-like protein [Arabidopsis thaliana]

 Score =  147 bits (372), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 61/88 (69%), Positives = 78/88 (88%), Gaps = 2/88 (2%)

Query: 127  QTCPIDALKLGACVDVLGGLIHIGLGDSAKEKCCPLLQGLADLDAAVCLCTAIRLKALNL 186
            +TCPID LKLG+CVD+LGGL+HIG+G SAKEKCCP+++GL DLDAAVCLCT I+ K LN 
Sbjct: 1395 KTCPIDTLKLGSCVDLLGGLVHIGIGKSAKEKCCPVVEGLVDLDAAVCLCTTIKAKLLN- 1453

Query: 187  INLLVPISLQVLVNDCGKYPPAGFQCPA 214
            I++++PI+L+VL+N CGK PP GF+CPA
Sbjct: 1454 IDVILPIALEVLLN-CGKNPPPGFKCPA 1480

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297835204|ref|XP_002885484.1| predicted protein [Arabidopsis lyrata subsp. lyrata] gi|297331324|gb|EFH61743.1| predicted protein [Arabidopsis lyrata subsp. lyrata]

 Score =  142 bits (357), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 63/90 (70%), Positives = 77/90 (85%), Gaps = 2/90 (2%)

Query: 124 PKQQTCPIDALKLGACVDVLGGLIHIGLGDSAKEKCCPLLQGLADLDAAVCLCTAIRLKA 183
           PK +TCPID LKLG+CVDVLGGL+HIG+G SAK+KCCP+L+GL DLDAAVCLCT I+ K 
Sbjct: 472 PKPKTCPIDTLKLGSCVDVLGGLVHIGIGQSAKQKCCPVLEGLVDLDAAVCLCTTIKAKL 531

Query: 184 LNLINLLVPISLQVLVNDCGKYPPAGFQCP 213
           LN I+L+ PI+L+VL+  CGK PP GF+CP
Sbjct: 532 LN-IDLVFPIALEVLLG-CGKKPPPGFKCP 559

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|15022163|gb|AAC49600.2| putative proline-rich protein [Solanum palustre]

 Score =  140 bits (353), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 66/89 (74%), Positives = 77/89 (86%), Gaps = 2/89 (2%)

Query: 126 QQTCPIDALKLGACVDVLGGLIHIGLGDSAKEKCCPLLQGLADLDAAVCLCTAIRLKALN 185
           Q TCPIDAL +GACVDVLGGLIHIG G SAK+ CCPLL GL DLDAA+CLCT IRLK LN
Sbjct: 320 QPTCPIDALNVGACVDVLGGLIHIGTGGSAKQTCCPLL-GLVDLDAAICLCTTIRLKLLN 378

Query: 186 LINLLVPISLQVLVNDCGKYPPAGFQCPA 214
            IN+++PI+LQVL++DCGKYPP  F+CP+
Sbjct: 379 -INIILPIALQVLIDDCGKYPPKDFKCPS 406

Source: Solanum palustre

Species: Solanum palustre

Genus: Solanum

Family: Solanaceae

Order: Solanales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359475712|ref|XP_003631735.1| PREDICTED: uncharacterized protein LOC100233114 [Vitis vinifera]

 Score =  140 bits (352), Expect = 5e-31,   Method: Compositional matrix adjust.
 Identities = 67/89 (75%), Positives = 80/89 (89%), Gaps = 2/89 (2%)

Query: 126 QQTCPIDALKLGACVDVLGGLIHIGLGDSAKEKCCPLLQGLADLDAAVCLCTAIRLKALN 185
           QQTCPID LKLGACVD+LGGL+HIG+G SAK+ CCP+LQGL DLDAAVCLCTAI++K LN
Sbjct: 224 QQTCPIDTLKLGACVDLLGGLVHIGIGSSAKDTCCPVLQGLVDLDAAVCLCTAIKVKLLN 283

Query: 186 LINLLVPISLQVLVNDCGKYPPAGFQCPA 214
            +N+++PI+LQVLV  CGK PP+GFQCPA
Sbjct: 284 -VNIIIPIALQVLVG-CGKTPPSGFQCPA 310

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449456667|ref|XP_004146070.1| PREDICTED: uncharacterized protein LOC101218239 [Cucumis sativus]

 Score =  139 bits (350), Expect = 7e-31,   Method: Compositional matrix adjust.
 Identities = 66/89 (74%), Positives = 79/89 (88%), Gaps = 2/89 (2%)

Query: 125 KQQTCPIDALKLGACVDVLGGLIHIGLGDSAKEKCCPLLQGLADLDAAVCLCTAIRLKAL 184
           K++TCPID LKLGACVD+LGGLIHIG+GD  K+ CCP+L+GL DLDAAVCLCT I+ K L
Sbjct: 166 KRETCPIDTLKLGACVDLLGGLIHIGIGDRTKQTCCPVLEGLVDLDAAVCLCTTIKAKLL 225

Query: 185 NLINLLVPISLQVLVNDCGKYPPAGFQCP 213
           N INL++PI+LQVLV DCGK+PP+GFQCP
Sbjct: 226 N-INLIIPIALQVLV-DCGKHPPSGFQCP 252

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449518449|ref|XP_004166254.1| PREDICTED: 36.4 kDa proline-rich protein-like, partial [Cucumis sativus]

 Score =  139 bits (350), Expect = 8e-31,   Method: Compositional matrix adjust.
 Identities = 66/89 (74%), Positives = 79/89 (88%), Gaps = 2/89 (2%)

Query: 125 KQQTCPIDALKLGACVDVLGGLIHIGLGDSAKEKCCPLLQGLADLDAAVCLCTAIRLKAL 184
           K++TCPID LKLGACVD+LGGLIHIG+GD  K+ CCP+L+GL DLDAAVCLCT I+ K L
Sbjct: 55  KRETCPIDTLKLGACVDLLGGLIHIGIGDRTKQTCCPVLEGLVDLDAAVCLCTTIKAKLL 114

Query: 185 NLINLLVPISLQVLVNDCGKYPPAGFQCP 213
           N INL++PI+LQVLV DCGK+PP+GFQCP
Sbjct: 115 N-INLIIPIALQVLV-DCGKHPPSGFQCP 141

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|118486411|gb|ABK95045.1| unknown [Populus trichocarpa]

 Score =  136 bits (343), Expect = 5e-30,   Method: Compositional matrix adjust.
 Identities = 66/89 (74%), Positives = 79/89 (88%), Gaps = 2/89 (2%)

Query: 126 QQTCPIDALKLGACVDVLGGLIHIGLGDSAKEKCCPLLQGLADLDAAVCLCTAIRLKALN 185
           Q+TCPID LKLGACVDVLGGLIHIG+G SAK++CCPLL+GL DLDAAVCLCT I+ K LN
Sbjct: 93  QETCPIDTLKLGACVDVLGGLIHIGIGSSAKDECCPLLEGLVDLDAAVCLCTVIKAKLLN 152

Query: 186 LINLLVPISLQVLVNDCGKYPPAGFQCPA 214
            INL++PI+L++LV DCGK PP GF+CP+
Sbjct: 153 -INLILPIALELLV-DCGKTPPEGFKCPS 179

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224104875|ref|XP_002333889.1| predicted protein [Populus trichocarpa] gi|222838950|gb|EEE77301.1| predicted protein [Populus trichocarpa]

 Score =  136 bits (342), Expect = 6e-30,   Method: Compositional matrix adjust.
 Identities = 66/89 (74%), Positives = 79/89 (88%), Gaps = 2/89 (2%)

Query: 126 QQTCPIDALKLGACVDVLGGLIHIGLGDSAKEKCCPLLQGLADLDAAVCLCTAIRLKALN 185
           Q+TCPID LKLGACVDVLGGLIHIG+G SAK++CCPLL+GL DLDAAVCLCT I+ K LN
Sbjct: 93  QETCPIDTLKLGACVDVLGGLIHIGIGSSAKDECCPLLEGLVDLDAAVCLCTVIKAKLLN 152

Query: 186 LINLLVPISLQVLVNDCGKYPPAGFQCPA 214
            INL++PI+L++LV DCGK PP GF+CP+
Sbjct: 153 -INLILPIALELLV-DCGKNPPEGFKCPS 179

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297804748|ref|XP_002870258.1| hypothetical protein ARALYDRAFT_493374 [Arabidopsis lyrata subsp. lyrata] gi|297316094|gb|EFH46517.1| hypothetical protein ARALYDRAFT_493374 [Arabidopsis lyrata subsp. lyrata]

 Score =  135 bits (339), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 68/90 (75%), Positives = 78/90 (86%), Gaps = 3/90 (3%)

Query: 126 QQTCPIDALKLGACVDVLGGLIHIGLGDS-AKEKCCPLLQGLADLDAAVCLCTAIRLKAL 184
            +TCPIDALKLGACVDVLGGLIHIGLG S AK KCCPLL+GLA +DAAVCLCT IR K L
Sbjct: 155 PETCPIDALKLGACVDVLGGLIHIGLGKSYAKAKCCPLLEGLASVDAAVCLCTTIRAKLL 214

Query: 185 NLINLLVPISLQVLVNDCGKYPPAGFQCPA 214
           N I+L++PI+L++LV DCGK PP GF+CPA
Sbjct: 215 N-IDLIIPIALELLV-DCGKTPPRGFKCPA 242

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224086363|ref|XP_002307865.1| predicted protein [Populus trichocarpa] gi|222853841|gb|EEE91388.1| predicted protein [Populus trichocarpa]

 Score =  133 bits (335), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 65/87 (74%), Positives = 77/87 (88%), Gaps = 2/87 (2%)

Query: 126 QQTCPIDALKLGACVDVLGGLIHIGLGDSAKEKCCPLLQGLADLDAAVCLCTAIRLKALN 185
           Q+TCPID LKLGACVDVLGGLIHIG+G SAK++CCPLL+GL DLDAAVCLCT I+ K LN
Sbjct: 1   QETCPIDTLKLGACVDVLGGLIHIGIGSSAKDECCPLLEGLVDLDAAVCLCTVIKAKLLN 60

Query: 186 LINLLVPISLQVLVNDCGKYPPAGFQC 212
            INL++PI+L++LV DCGK PP GF+C
Sbjct: 61  -INLILPIALELLV-DCGKTPPEGFKC 85

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

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Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	214
TAIR|locus:2090419	334	CWLP "cell wall-plasma membran	0.401	0.257	0.719	5.5e-32
TAIR|locus:4010713767	1480	AT3G22142 "AT3G22142" [Arabido	0.401	0.058	0.693	7.9e-30
TAIR|locus:2203876	297	AT1G62500 [Arabidopsis thalian	0.406	0.292	0.685	1.3e-29
TAIR|locus:2041927	291	AT2G10940 [Arabidopsis thalian	0.387	0.285	0.658	2.2e-27
TAIR|locus:2135595	161	AZI1 "azelaic acid induced 1"	0.392	0.521	0.588	1.8e-23
TAIR|locus:2135610	168	EARLI1 "EARLY ARABIDOPSIS ALUM	0.387	0.494	0.595	3.8e-23
TAIR|locus:2135625	182	AT4G12490 [Arabidopsis thalian	0.387	0.456	0.595	4.8e-23
TAIR|locus:2135635	177	AT4G12500 [Arabidopsis thalian	0.387	0.468	0.583	7.8e-23
TAIR|locus:2050901	134	AT2G45180 [Arabidopsis thalian	0.387	0.619	0.588	7e-22
TAIR|locus:2203886	149	AT1G62510 [Arabidopsis thalian	0.387	0.557	0.571	7e-22

TAIR|locus:2090419 CWLP "cell wall-plasma membrane linker protein" [Arabidopsis thaliana (taxid:3702)]

 Score = 332 (121.9 bits), Expect = 5.5e-32, Sum P(2) = 5.5e-32
 Identities = 64/89 (71%), Positives = 77/89 (86%)

Query:   127 QTCPIDALKLGACVDVLGGLIHIGLGDS-AKEKCCPLLQGLADLDAAVCLCTAIRLKALN 185
             +TCPID LKLGACVDVLGGLIHIGLG S AK +CCP+L GL DLDAAVCLCT I+LK LN
Sbjct:   248 ETCPIDTLKLGACVDVLGGLIHIGLGKSHAKAECCPVLGGLLDLDAAVCLCTTIKLKLLN 307

Query:   186 LINLLVPISLQVLVNDCGKYPPAGFQCPA 214
              I+L++PI+L++L+ DCGK PP+ F+CPA
Sbjct:   308 -IDLVLPIALELLL-DCGKTPPSDFKCPA 334

GO:0006869 "lipid transport" evidence=IEA;ISS

GO:0008289 "lipid binding" evidence=ISS

GO:0006944 "cellular membrane fusion" evidence=RCA

GO:0009556 "microsporogenesis" evidence=RCA

GO:0052543 "callose deposition in cell wall" evidence=RCA

TAIR|locus:4010713767 AT3G22142 "AT3G22142" [Arabidopsis thaliana (taxid:3702)]

 Score = 344 (126.2 bits), Expect = 7.9e-30, P = 7.9e-30
 Identities = 61/88 (69%), Positives = 78/88 (88%)

Query:   127 QTCPIDALKLGACVDVLGGLIHIGLGDSAKEKCCPLLQGLADLDAAVCLCTAIRLKALNL 186
             +TCPID LKLG+CVD+LGGL+HIG+G SAKEKCCP+++GL DLDAAVCLCT I+ K LN 
Sbjct:  1395 KTCPIDTLKLGSCVDLLGGLVHIGIGKSAKEKCCPVVEGLVDLDAAVCLCTTIKAKLLN- 1453

Query:   187 INLLVPISLQVLVNDCGKYPPAGFQCPA 214
             I++++PI+L+VL+N CGK PP GF+CPA
Sbjct:  1454 IDVILPIALEVLLN-CGKNPPPGFKCPA 1480

GO:0005575 "cellular_component" evidence=ND

GO:0006869 "lipid transport" evidence=IEA

TAIR|locus:2203876 AT1G62500 [Arabidopsis thaliana (taxid:3702)]

 Score = 328 (120.5 bits), Expect = 1.3e-29, P = 1.3e-29
 Identities = 61/89 (68%), Positives = 73/89 (82%)

Query:   125 KQQTCPIDALKLGACVDVLGGLIHIGLGDSAKEKCCPLLQGLADLDAAVCLCTAIRLKAL 184
             KQ TCPI+ALKLGACVDVLGGLIHIGLG+  +  CCP+LQGL +L+AAVCLCT IRLK L
Sbjct:   208 KQPTCPINALKLGACVDVLGGLIHIGLGNPVENVCCPVLQGLLELEAAVCLCTTIRLKLL 267

Query:   185 NLINLLVPISLQVLVNDCGKYPPAGFQCP 213
             NL N+ +P++LQ L+  CG  PP+GF CP
Sbjct:   268 NL-NIFIPLALQALIT-CGINPPSGFVCP 294

GO:0006869 "lipid transport" evidence=IEA;ISS

GO:0008289 "lipid binding" evidence=ISS

TAIR|locus:2041927 AT2G10940 [Arabidopsis thaliana (taxid:3702)]

 Score = 307 (113.1 bits), Expect = 2.2e-27, P = 2.2e-27
 Identities = 56/85 (65%), Positives = 70/85 (82%)

Query:   128 TCPIDALKLGACVDVLGGLIHIGLGDSAKEKCCPLLQGLADLDAAVCLCTAIRLKALNLI 187
             TCPID LKLGACVD+LGGL+ IGLGD A  KCCPLL+GL +++AA CLCT ++LKAL+L 
Sbjct:   207 TCPIDTLKLGACVDLLGGLVKIGLGDPAVNKCCPLLKGLVEVEAAACLCTTLKLKALDL- 265

Query:   188 NLLVPISLQVLVNDCGKYPPAGFQC 212
             NL VP++LQ+L+  CGK PP G+ C
Sbjct:   266 NLYVPVALQLLLT-CGKNPPPGYTC 289

GO:0006869 "lipid transport" evidence=IEA;ISS

GO:0008289 "lipid binding" evidence=ISS

GO:0009507 "chloroplast" evidence=IDA

GO:0009535 "chloroplast thylakoid membrane" evidence=IDA

GO:0016020 "membrane" evidence=IDA

GO:0048046 "apoplast" evidence=IDA

GO:0009506 "plasmodesma" evidence=IDA

TAIR|locus:2135595 AZI1 "azelaic acid induced 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 270 (100.1 bits), Expect = 1.8e-23, P = 1.8e-23
 Identities = 50/85 (58%), Positives = 64/85 (75%)

Query:   128 TCPIDALKLGACVDVLGGLIHIGLGDSAKEKCCPLLQGLADLDAAVCLCTAIRLKALNLI 187
             +CPIDALKLG C +VL  L++I LG  + ++CC L+QGL D+DAA+CLCTA+R   L  I
Sbjct:    77 SCPIDALKLGVCANVLSSLLNIQLGQPSSQQCCSLIQGLVDVDAAICLCTALRANVLG-I 135

Query:   188 NLLVPISLQVLVNDCGKYPPAGFQC 212
             NL VPISL VL+N C +  P+GFQC
Sbjct:   136 NLNVPISLSVLLNVCNRKLPSGFQC 160

GO:0005576 "extracellular region" evidence=ISM

GO:0006869 "lipid transport" evidence=IEA;ISS

GO:0008289 "lipid binding" evidence=ISS

GO:0050832 "defense response to fungus" evidence=RCA;IMP

GO:0009627 "systemic acquired resistance" evidence=IMP

GO:0009506 "plasmodesma" evidence=IDA

GO:0006612 "protein targeting to membrane" evidence=RCA

GO:0006865 "amino acid transport" evidence=RCA

GO:0009409 "response to cold" evidence=RCA

GO:0009697 "salicylic acid biosynthetic process" evidence=RCA

GO:0009814 "defense response, incompatible interaction" evidence=RCA

GO:0009863 "salicylic acid mediated signaling pathway" evidence=RCA

GO:0010167 "response to nitrate" evidence=RCA

GO:0010363 "regulation of plant-type hypersensitive response" evidence=RCA

GO:0015706 "nitrate transport" evidence=RCA

GO:0019684 "photosynthesis, light reaction" evidence=RCA

GO:0042742 "defense response to bacterium" evidence=RCA

GO:0043069 "negative regulation of programmed cell death" evidence=RCA

TAIR|locus:2135610 EARLI1 "EARLY ARABIDOPSIS ALUMINUM INDUCED 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 267 (99.0 bits), Expect = 3.8e-23, P = 3.8e-23
 Identities = 50/84 (59%), Positives = 62/84 (73%)

Query:   129 CPIDALKLGACVDVLGGLIHIGLGDSAKEKCCPLLQGLADLDAAVCLCTAIRLKALNLIN 188
             CPIDAL+LG C +VL  L++I LG  + + CC L+QGL DLDAA+CLCTA+R   L  IN
Sbjct:    85 CPIDALRLGVCANVLSSLLNIQLGQPSAQPCCSLIQGLVDLDAAICLCTALRANVLG-IN 143

Query:   189 LLVPISLQVLVNDCGKYPPAGFQC 212
             L VPISL VL+N C +  P+GFQC
Sbjct:   144 LNVPISLSVLLNVCNRKVPSGFQC 167

GO:0005576 "extracellular region" evidence=ISM

GO:0006869 "lipid transport" evidence=IEA;ISS

GO:0008289 "lipid binding" evidence=ISS

GO:0050832 "defense response to fungus" evidence=RCA;IMP

GO:0009409 "response to cold" evidence=RCA;IMP

GO:0009651 "response to salt stress" evidence=IMP

GO:0009737 "response to abscisic acid stimulus" evidence=IMP

GO:0009505 "plant-type cell wall" evidence=IDA

GO:0006612 "protein targeting to membrane" evidence=RCA

GO:0006865 "amino acid transport" evidence=RCA

GO:0009697 "salicylic acid biosynthetic process" evidence=RCA

GO:0009814 "defense response, incompatible interaction" evidence=RCA

GO:0009863 "salicylic acid mediated signaling pathway" evidence=RCA

GO:0010363 "regulation of plant-type hypersensitive response" evidence=RCA

GO:0019684 "photosynthesis, light reaction" evidence=RCA

GO:0042742 "defense response to bacterium" evidence=RCA

GO:0043069 "negative regulation of programmed cell death" evidence=RCA

TAIR|locus:2135625 AT4G12490 [Arabidopsis thaliana (taxid:3702)]

 Score = 266 (98.7 bits), Expect = 4.8e-23, P = 4.8e-23
 Identities = 50/84 (59%), Positives = 62/84 (73%)

Query:   129 CPIDALKLGACVDVLGGLIHIGLGDSAKEKCCPLLQGLADLDAAVCLCTAIRLKALNLIN 188
             CPIDAL+LG C +VL GL+++ LG  + + CC L+QGL DLDAAVCLCTA+R   L  IN
Sbjct:    99 CPIDALRLGVCANVLSGLLNVQLGQPSPQPCCSLIQGLVDLDAAVCLCTALRANVLG-IN 157

Query:   189 LLVPISLQVLVNDCGKYPPAGFQC 212
             L VPISL VL+N C +  P+ FQC
Sbjct:   158 LNVPISLSVLLNVCNRRLPSNFQC 181

GO:0006869 "lipid transport" evidence=IEA;ISS

GO:0008289 "lipid binding" evidence=ISS

GO:0050832 "defense response to fungus" evidence=IMP

TAIR|locus:2135635 AT4G12500 [Arabidopsis thaliana (taxid:3702)]

 Score = 264 (98.0 bits), Expect = 7.8e-23, P = 7.8e-23
 Identities = 49/84 (58%), Positives = 62/84 (73%)

Query:   129 CPIDALKLGACVDVLGGLIHIGLGDSAKEKCCPLLQGLADLDAAVCLCTAIRLKALNLIN 188
             CPIDAL+LG C +VL GL+++ LG  + + CC L+QGL DLDAA+CLCTA+R   L  IN
Sbjct:    94 CPIDALRLGVCANVLSGLLNVQLGQPSAQPCCSLIQGLVDLDAAICLCTALRANVLG-IN 152

Query:   189 LLVPISLQVLVNDCGKYPPAGFQC 212
             L VPISL VL+N C +  P+ FQC
Sbjct:   153 LNVPISLSVLLNVCNRRLPSDFQC 176

GO:0005576 "extracellular region" evidence=ISM

GO:0006869 "lipid transport" evidence=IEA;ISS

GO:0008289 "lipid binding" evidence=ISS

TAIR|locus:2050901 AT2G45180 [Arabidopsis thaliana (taxid:3702)]

 Score = 255 (94.8 bits), Expect = 7.0e-22, P = 7.0e-22
 Identities = 50/85 (58%), Positives = 61/85 (71%)

Query:   128 TCPIDALKLGACVDVLGGLIHIGLGDSAKEKCCPLLQGLADLDAAVCLCTAIRLKALNLI 187
             TCP D LKLG C D+LG L+++ +G   K  CC LLQGLA+L+AAVCLCTA++   L  I
Sbjct:    51 TCPTDTLKLGVCADLLG-LVNVVVGSPPKTPCCTLLQGLANLEAAVCLCTALKANVLG-I 108

Query:   188 NLLVPISLQVLVNDCGKYPPAGFQC 212
             NL VPI L +L+N CGK  P GFQC
Sbjct:   109 NLNVPIDLTLLLNYCGKKVPHGFQC 133

GO:0005576 "extracellular region" evidence=ISM

GO:0006869 "lipid transport" evidence=IEA;ISS

GO:0008289 "lipid binding" evidence=ISS

GO:0009535 "chloroplast thylakoid membrane" evidence=IDA

GO:0000038 "very long-chain fatty acid metabolic process" evidence=RCA

GO:0042335 "cuticle development" evidence=RCA

TAIR|locus:2203886 AT1G62510 [Arabidopsis thaliana (taxid:3702)]

 Score = 255 (94.8 bits), Expect = 7.0e-22, P = 7.0e-22
 Identities = 48/84 (57%), Positives = 60/84 (71%)

Query:   129 CPIDALKLGACVDVLGGLIHIGLGDSAKEKCCPLLQGLADLDAAVCLCTAIRLKALNLIN 188
             CP DALKLG C +VL GL+++ LG    E CC L+QGLADL+AA CLCTA++   L  IN
Sbjct:    67 CPRDALKLGVCANVLNGLLNVTLGKPPVEPCCTLIQGLADLEAAACLCTALKANILG-IN 125

Query:   189 LLVPISLQVLVNDCGKYPPAGFQC 212
             L +P+SL +L+N C K  P GFQC
Sbjct:   126 LNIPLSLSLLLNVCSKKVPRGFQC 149

GO:0006869 "lipid transport" evidence=IEA;ISS

GO:0008289 "lipid binding" evidence=ISS

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	214
cd01958	85	cd01958, HPS_like, HPS_like: Hydrophobic Protein f	1e-28
PRK14951	618	PRK14951, PRK14951, DNA polymerase III subunits ga	3e-12
PRK14950	585	PRK14950, PRK14950, DNA polymerase III subunits ga	3e-11
PRK12270	1228	PRK12270, kgd, alpha-ketoglutarate decarboxylase;	4e-11
PHA03247	3151	PHA03247, PHA03247, large tegument protein UL36; P	2e-10
PRK14951	618	PRK14951, PRK14951, DNA polymerase III subunits ga	3e-10
PRK12270	1228	PRK12270, kgd, alpha-ketoglutarate decarboxylase;	3e-10
pfam00234	74	pfam00234, Tryp_alpha_amyl, Protease inhibitor/see	3e-10
pfam04652	315	pfam04652, DUF605, Vta1 like	5e-10
PRK12270	1228	PRK12270, kgd, alpha-ketoglutarate decarboxylase;	2e-09
PHA03247	3151	PHA03247, PHA03247, large tegument protein UL36; P	3e-09
PRK12270	1228	PRK12270, kgd, alpha-ketoglutarate decarboxylase;	4e-09
PHA03247	3151	PHA03247, PHA03247, large tegument protein UL36; P	6e-09
pfam04652	315	pfam04652, DUF605, Vta1 like	6e-09
PRK14948	620	PRK14948, PRK14948, DNA polymerase III subunits ga	8e-09
PRK14950	585	PRK14950, PRK14950, DNA polymerase III subunits ga	1e-08
pfam04652	315	pfam04652, DUF605, Vta1 like	1e-08
PHA03247	3151	PHA03247, PHA03247, large tegument protein UL36; P	2e-08
PRK14948	620	PRK14948, PRK14948, DNA polymerase III subunits ga	2e-08
pfam09770	804	pfam09770, PAT1, Topoisomerase II-associated prote	3e-08
PRK14948	620	PRK14948, PRK14948, DNA polymerase III subunits ga	4e-08
PRK12323	700	PRK12323, PRK12323, DNA polymerase III subunits ga	4e-08
PRK14971	614	PRK14971, PRK14971, DNA polymerase III subunits ga	6e-08
pfam04652	315	pfam04652, DUF605, Vta1 like	7e-08
pfam09770	804	pfam09770, PAT1, Topoisomerase II-associated prote	8e-08
PRK12270	1228	PRK12270, kgd, alpha-ketoglutarate decarboxylase;	1e-07
PHA03247	3151	PHA03247, PHA03247, large tegument protein UL36; P	1e-07
PRK07764	824	PRK07764, PRK07764, DNA polymerase III subunits ga	1e-07
PHA03247	3151	PHA03247, PHA03247, large tegument protein UL36; P	2e-07
PRK14948	620	PRK14948, PRK14948, DNA polymerase III subunits ga	2e-07
PRK14954	620	PRK14954, PRK14954, DNA polymerase III subunits ga	2e-07
PRK07764	824	PRK07764, PRK07764, DNA polymerase III subunits ga	3e-07
PHA03247	3151	PHA03247, PHA03247, large tegument protein UL36; P	4e-07
PRK14948	620	PRK14948, PRK14948, DNA polymerase III subunits ga	4e-07
PRK14971	614	PRK14971, PRK14971, DNA polymerase III subunits ga	6e-07
PRK07994	647	PRK07994, PRK07994, DNA polymerase III subunits ga	6e-07
pfam04652	315	pfam04652, DUF605, Vta1 like	7e-07
PRK14965	576	PRK14965, PRK14965, DNA polymerase III subunits ga	7e-07
PRK07764	824	PRK07764, PRK07764, DNA polymerase III subunits ga	8e-07
PRK12270	1228	PRK12270, kgd, alpha-ketoglutarate decarboxylase;	1e-06
PHA03247	3151	PHA03247, PHA03247, large tegument protein UL36; P	1e-06
PHA03247	3151	PHA03247, PHA03247, large tegument protein UL36; P	1e-06
PHA03247	3151	PHA03247, PHA03247, large tegument protein UL36; P	1e-06
PHA03247	3151	PHA03247, PHA03247, large tegument protein UL36; P	1e-06
PRK14948	620	PRK14948, PRK14948, DNA polymerase III subunits ga	1e-06
PRK07764	824	PRK07764, PRK07764, DNA polymerase III subunits ga	1e-06
PRK07994	647	PRK07994, PRK07994, DNA polymerase III subunits ga	1e-06
PTZ00144	418	PTZ00144, PTZ00144, dihydrolipoamide succinyltrans	1e-06
pfam05518	753	pfam05518, Totivirus_coat, Totivirus coat protein	1e-06
PHA03247	3151	PHA03247, PHA03247, large tegument protein UL36; P	2e-06
pfam04652	315	pfam04652, DUF605, Vta1 like	2e-06
PRK14948	620	PRK14948, PRK14948, DNA polymerase III subunits ga	2e-06
PRK14948	620	PRK14948, PRK14948, DNA polymerase III subunits ga	2e-06
PRK14948	620	PRK14948, PRK14948, DNA polymerase III subunits ga	2e-06
PRK12323	700	PRK12323, PRK12323, DNA polymerase III subunits ga	2e-06
PRK14950	585	PRK14950, PRK14950, DNA polymerase III subunits ga	3e-06
PRK12323	700	PRK12323, PRK12323, DNA polymerase III subunits ga	3e-06
PRK07764	824	PRK07764, PRK07764, DNA polymerase III subunits ga	3e-06
PRK07764	824	PRK07764, PRK07764, DNA polymerase III subunits ga	4e-06
PRK06995	484	PRK06995, flhF, flagellar biosynthesis regulator F	4e-06
PHA03247	3151	PHA03247, PHA03247, large tegument protein UL36; P	6e-06
PRK14086	617	PRK14086, dnaA, chromosomal replication initiation	6e-06
PRK03427	333	PRK03427, PRK03427, cell division protein ZipA; Pr	6e-06
PRK14954	620	PRK14954, PRK14954, DNA polymerase III subunits ga	8e-06
PRK14954	620	PRK14954, PRK14954, DNA polymerase III subunits ga	8e-06
PRK12270	1228	PRK12270, kgd, alpha-ketoglutarate decarboxylase;	1e-05
pfam09770	804	pfam09770, PAT1, Topoisomerase II-associated prote	1e-05
pfam02993	238	pfam02993, MCPVI, Minor capsid protein VI	1e-05
PRK11633	226	PRK11633, PRK11633, cell division protein DedD; Pr	1e-05
PHA03307	1352	PHA03307, PHA03307, transcriptional regulator ICP4	1e-05
PRK07003	830	PRK07003, PRK07003, DNA polymerase III subunits ga	1e-05
PHA03247	3151	PHA03247, PHA03247, large tegument protein UL36; P	2e-05
PRK15313	955	PRK15313, PRK15313, autotransport protein MisL; Pr	2e-05
PRK01297	475	PRK01297, PRK01297, ATP-dependent RNA helicase Rhl	2e-05
PRK14948	620	PRK14948, PRK14948, DNA polymerase III subunits ga	3e-05
PRK14948	620	PRK14948, PRK14948, DNA polymerase III subunits ga	3e-05
PRK07764	824	PRK07764, PRK07764, DNA polymerase III subunits ga	3e-05
PRK07764	824	PRK07764, PRK07764, DNA polymerase III subunits ga	3e-05
PRK07764	824	PRK07764, PRK07764, DNA polymerase III subunits ga	3e-05
PRK14965	576	PRK14965, PRK14965, DNA polymerase III subunits ga	3e-05
PTZ00144	418	PTZ00144, PTZ00144, dihydrolipoamide succinyltrans	3e-05
PRK01297	475	PRK01297, PRK01297, ATP-dependent RNA helicase Rhl	3e-05
PHA03247	3151	PHA03247, PHA03247, large tegument protein UL36; P	4e-05
PRK07764	824	PRK07764, PRK07764, DNA polymerase III subunits ga	4e-05
pfam05518	753	pfam05518, Totivirus_coat, Totivirus coat protein	4e-05
PRK14948	620	PRK14948, PRK14948, DNA polymerase III subunits ga	5e-05
PRK14948	620	PRK14948, PRK14948, DNA polymerase III subunits ga	5e-05
PRK07994	647	PRK07994, PRK07994, DNA polymerase III subunits ga	5e-05
PRK11633	226	PRK11633, PRK11633, cell division protein DedD; Pr	5e-05
PRK09111	598	PRK09111, PRK09111, DNA polymerase III subunits ga	5e-05
pfam09770	804	pfam09770, PAT1, Topoisomerase II-associated prote	6e-05
pfam09770	804	pfam09770, PAT1, Topoisomerase II-associated prote	6e-05
PTZ00144	418	PTZ00144, PTZ00144, dihydrolipoamide succinyltrans	6e-05
PTZ00144	418	PTZ00144, PTZ00144, dihydrolipoamide succinyltrans	6e-05
PHA03307	1352	PHA03307, PHA03307, transcriptional regulator ICP4	6e-05
PHA03247	3151	PHA03247, PHA03247, large tegument protein UL36; P	7e-05
PRK14948	620	PRK14948, PRK14948, DNA polymerase III subunits ga	7e-05
PRK07764	824	PRK07764, PRK07764, DNA polymerase III subunits ga	8e-05
PRK09111	598	PRK09111, PRK09111, DNA polymerase III subunits ga	8e-05
PRK12323	700	PRK12323, PRK12323, DNA polymerase III subunits ga	9e-05
PRK14086	617	PRK14086, dnaA, chromosomal replication initiation	9e-05
PHA03247	3151	PHA03247, PHA03247, large tegument protein UL36; P	1e-04
PRK14948	620	PRK14948, PRK14948, DNA polymerase III subunits ga	1e-04
PRK12323	700	PRK12323, PRK12323, DNA polymerase III subunits ga	1e-04
PRK07764	824	PRK07764, PRK07764, DNA polymerase III subunits ga	1e-04
PRK07764	824	PRK07764, PRK07764, DNA polymerase III subunits ga	1e-04
PRK14965	576	PRK14965, PRK14965, DNA polymerase III subunits ga	1e-04
pfam13388	422	pfam13388, DUF4106, Protein of unknown function (D	1e-04
PHA03247	3151	PHA03247, PHA03247, large tegument protein UL36; P	2e-04
PRK12323	700	PRK12323, PRK12323, DNA polymerase III subunits ga	2e-04
PRK07764	824	PRK07764, PRK07764, DNA polymerase III subunits ga	2e-04
PRK07764	824	PRK07764, PRK07764, DNA polymerase III subunits ga	2e-04
PRK07764	824	PRK07764, PRK07764, DNA polymerase III subunits ga	2e-04
PRK09111	598	PRK09111, PRK09111, DNA polymerase III subunits ga	2e-04
PRK09111	598	PRK09111, PRK09111, DNA polymerase III subunits ga	2e-04
PRK12323	700	PRK12323, PRK12323, DNA polymerase III subunits ga	3e-04
PRK07764	824	PRK07764, PRK07764, DNA polymerase III subunits ga	3e-04
PRK11633	226	PRK11633, PRK11633, cell division protein DedD; Pr	3e-04
PHA03307	1352	PHA03307, PHA03307, transcriptional regulator ICP4	3e-04
PHA03307	1352	PHA03307, PHA03307, transcriptional regulator ICP4	3e-04
PRK06975	656	PRK06975, PRK06975, bifunctional uroporphyrinogen-	3e-04
pfam07174	297	pfam07174, FAP, Fibronectin-attachment protein (FA	3e-04
TIGR02784	1135	TIGR02784, addA_alphas, double-strand break repair	3e-04
PRK07994	647	PRK07994, PRK07994, DNA polymerase III subunits ga	4e-04
PRK07994	647	PRK07994, PRK07994, DNA polymerase III subunits ga	4e-04
pfam05518	753	pfam05518, Totivirus_coat, Totivirus coat protein	4e-04
PRK06995	484	PRK06995, flhF, flagellar biosynthesis regulator F	4e-04
pfam13388	422	pfam13388, DUF4106, Protein of unknown function (D	4e-04
PRK06975	656	PRK06975, PRK06975, bifunctional uroporphyrinogen-	4e-04
COG0810	244	COG0810, TonB, Periplasmic protein TonB, links inn	4e-04
COG0810	244	COG0810, TonB, Periplasmic protein TonB, links inn	4e-04
PRK00095	617	PRK00095, mutL, DNA mismatch repair protein; Revie	4e-04
PTZ00449	943	PTZ00449, PTZ00449, 104 kDa microneme/rhoptry anti	4e-04
PLN02983	274	PLN02983, PLN02983, biotin carboxyl carrier protei	4e-04
PHA03247	3151	PHA03247, PHA03247, large tegument protein UL36; P	5e-04
PRK13042	291	PRK13042, PRK13042, superantigen-like protein; Rev	5e-04
pfam03153	332	pfam03153, TFIIA, Transcription factor IIA, alpha/	5e-04
TIGR02927	579	TIGR02927, SucB_Actino, 2-oxoglutarate dehydrogena	5e-04
pfam04652	315	pfam04652, DUF605, Vta1 like	6e-04
PRK03427	333	PRK03427, PRK03427, cell division protein ZipA; Pr	6e-04
PRK09111	598	PRK09111, PRK09111, DNA polymerase III subunits ga	6e-04
pfam03276	582	pfam03276, Gag_spuma, Spumavirus gag protein	6e-04
PHA03369	663	PHA03369, PHA03369, capsid maturational protease;	6e-04
PRK11892	464	PRK11892, PRK11892, pyruvate dehydrogenase subunit	6e-04
PRK14948	620	PRK14948, PRK14948, DNA polymerase III subunits ga	7e-04
PRK14086	617	PRK14086, dnaA, chromosomal replication initiation	7e-04
PLN02258	590	PLN02258, PLN02258, 9-cis-epoxycarotenoid dioxygen	7e-04
PRK07994	647	PRK07994, PRK07994, DNA polymerase III subunits ga	8e-04
PRK14963	504	PRK14963, PRK14963, DNA polymerase III subunits ga	8e-04
COG5178	2365	COG5178, PRP8, U5 snRNP spliceosome subunit [RNA p	8e-04
PRK13042	291	PRK13042, PRK13042, superantigen-like protein; Rev	9e-04
PRK11892	464	PRK11892, PRK11892, pyruvate dehydrogenase subunit	9e-04
PHA03247	3151	PHA03247, PHA03247, large tegument protein UL36; P	0.001
PHA03247	3151	PHA03247, PHA03247, large tegument protein UL36; P	0.001
PRK07764	824	PRK07764, PRK07764, DNA polymerase III subunits ga	0.001
PTZ00144	418	PTZ00144, PTZ00144, dihydrolipoamide succinyltrans	0.001
pfam05518	753	pfam05518, Totivirus_coat, Totivirus coat protein	0.001
PHA03307	1352	PHA03307, PHA03307, transcriptional regulator ICP4	0.001
PRK07003	830	PRK07003, PRK07003, DNA polymerase III subunits ga	0.001
PRK15313	955	PRK15313, PRK15313, autotransport protein MisL; Pr	0.001
PRK01297	475	PRK01297, PRK01297, ATP-dependent RNA helicase Rhl	0.001
PLN02983	274	PLN02983, PLN02983, biotin carboxyl carrier protei	0.001
PRK11892	464	PRK11892, PRK11892, pyruvate dehydrogenase subunit	0.001
PRK11892	464	PRK11892, PRK11892, pyruvate dehydrogenase subunit	0.001
PLN02258	590	PLN02258, PLN02258, 9-cis-epoxycarotenoid dioxygen	0.001
PLN02258	590	PLN02258, PLN02258, 9-cis-epoxycarotenoid dioxygen	0.001
PRK14963	504	PRK14963, PRK14963, DNA polymerase III subunits ga	0.001
COG5178	2365	COG5178, PRP8, U5 snRNP spliceosome subunit [RNA p	0.001
pfam10152	147	pfam10152, DUF2360, Predicted coiled-coil domain-c	0.001
pfam04929	381	pfam04929, Herpes_DNAp_acc, Herpes DNA replication	0.001
PLN03209	576	PLN03209, PLN03209, translocon at the inner envelo	0.001
PRK09424	509	PRK09424, pntA, NAD(P) transhydrogenase subunit al	0.001
PRK07764	824	PRK07764, PRK07764, DNA polymerase III subunits ga	0.002
PRK07764	824	PRK07764, PRK07764, DNA polymerase III subunits ga	0.002
PRK14965	576	PRK14965, PRK14965, DNA polymerase III subunits ga	0.002
PRK11633	226	PRK11633, PRK11633, cell division protein DedD; Pr	0.002
PHA03307	1352	PHA03307, PHA03307, transcriptional regulator ICP4	0.002
PRK07003	830	PRK07003, PRK07003, DNA polymerase III subunits ga	0.002
PRK01297	475	PRK01297, PRK01297, ATP-dependent RNA helicase Rhl	0.002
PRK01297	475	PRK01297, PRK01297, ATP-dependent RNA helicase Rhl	0.002
pfam13388	422	pfam13388, DUF4106, Protein of unknown function (D	0.002
PRK06975	656	PRK06975, PRK06975, bifunctional uroporphyrinogen-	0.002
TIGR02927	579	TIGR02927, SucB_Actino, 2-oxoglutarate dehydrogena	0.002
PRK11892	464	PRK11892, PRK11892, pyruvate dehydrogenase subunit	0.002
PRK14963	504	PRK14963, PRK14963, DNA polymerase III subunits ga	0.002
COG5178	2365	COG5178, PRP8, U5 snRNP spliceosome subunit [RNA p	0.002
PRK10819	246	PRK10819, PRK10819, transport protein TonB; Provis	0.002
PHA03378	991	PHA03378, PHA03378, EBNA-3B; Provisional	0.002
TIGR00601	378	TIGR00601, rad23, UV excision repair protein Rad23	0.002
PRK00404	141	PRK00404, tatB, sec-independent translocase; Provi	0.002
COG5373	931	COG5373, COG5373, Predicted membrane protein [Func	0.002
PRK10856	331	PRK10856, PRK10856, cytoskeletal protein RodZ; Pro	0.002
PRK07764	824	PRK07764, PRK07764, DNA polymerase III subunits ga	0.003
PHA03307	1352	PHA03307, PHA03307, transcriptional regulator ICP4	0.003
PHA03307	1352	PHA03307, PHA03307, transcriptional regulator ICP4	0.003
PRK15313	955	PRK15313, PRK15313, autotransport protein MisL; Pr	0.003
PRK06975	656	PRK06975, PRK06975, bifunctional uroporphyrinogen-	0.003
pfam07174	297	pfam07174, FAP, Fibronectin-attachment protein (FA	0.003
COG0810	244	COG0810, TonB, Periplasmic protein TonB, links inn	0.003
TIGR02927	579	TIGR02927, SucB_Actino, 2-oxoglutarate dehydrogena	0.003
COG5373	931	COG5373, COG5373, Predicted membrane protein [Func	0.003
PRK14959	624	PRK14959, PRK14959, DNA polymerase III subunits ga	0.003
PLN02769	629	PLN02769, PLN02769, Probable galacturonosyltransfe	0.003
TIGR01645	612	TIGR01645, half-pint, poly-U binding splicing fact	0.003
PRK12323	700	PRK12323, PRK12323, DNA polymerase III subunits ga	0.004
PRK14971	614	PRK14971, PRK14971, DNA polymerase III subunits ga	0.004
PRK07994	647	PRK07994, PRK07994, DNA polymerase III subunits ga	0.004
PRK07003	830	PRK07003, PRK07003, DNA polymerase III subunits ga	0.004
COG0810	244	COG0810, TonB, Periplasmic protein TonB, links inn	0.004
PLN02258	590	PLN02258, PLN02258, 9-cis-epoxycarotenoid dioxygen	0.004
PRK11855	547	PRK11855, PRK11855, dihydrolipoamide acetyltransfe	0.004
pfam01044	850	pfam01044, Vinculin, Vinculin family	0.004

>gnl|CDD|238924 cd01958, HPS_like, HPS_like: Hydrophobic Protein from Soybean (HPS)-like subfamily; composed of proteins with similarity to HPS, a small hydrophobic protein with unknown function related to cereal-type alpha-amylase inhibitors and lipid transfer proteins

 Score =  102 bits (256), Expect = 1e-28
 Identities = 47/86 (54%), Positives = 60/86 (69%), Gaps = 2/86 (2%)

Query: 127 QTCPIDALKLGACVDVLGGLIHIGLGDSAKEKCCPLLQGLADLDAAVCLCTAIRLKALNL 186
            TCP DALKLG C +VLG  +   LG  A + CCPL+ GLADLDAAVCLCTAI+   L  
Sbjct: 2   PTCPRDALKLGVCANVLGLSLL-LLGTPAVQPCCPLIGGLADLDAAVCLCTAIKANILG- 59

Query: 187 INLLVPISLQVLVNDCGKYPPAGFQC 212
           I++ +P++L +L+N CG+  P GF C
Sbjct: 60  ISINIPVALSLLLNSCGRNVPPGFTC 85

In addition to HPS, members of this subfamily include a hybrid proline-rich protein (HyPRP) from maize, a dark-inducible protein (LeDI-2) from Lithospermum erythrorhizon, maize ZRP3 protein, and rice RcC3 protein. HyPRP is an embryo-specific protein that contains an N-terminal proline-rich domain and a C-terminal HPS-like cysteine-rich domain. It has been suggested that HyPRP may be involved in the stability and defense of the developing embryo. LeDI-2 is a root-specific protein that may be involved in regulating the biosynthesis of shikonin derivatives in L. erythrorhizon. Maize ZRP3 and rice RcC3 are root-specific proteins whose functions are yet to be determined. It has been reported that ZRP3 largely accumulates in a distinct subset of cortical cells. Length = 85

>gnl|CDD|237865 PRK14951, PRK14951, DNA polymerase III subunits gamma and tau; Provisional

 Score = 64.7 bits (158), Expect = 3e-12
 Identities = 22/115 (19%), Positives = 30/115 (26%), Gaps = 8/115 (6%)

Query: 31  PPPPPASKTPNCPPPPSSPSPKTPPPPPPFVKSPPPPPPVVKSAPPPPPPVAKSPPPPPP 90
            P  P +  P   P   + +   P   P    S P  PP      P   P A +P   P 
Sbjct: 380 TPARPEAAAPAAAPVAQAAAAPAPAAAPAAAASAPAAPPAAAPPAPVAAPAAAAPAAAPA 439

Query: 91  VVKSPPPPIVKPPPPNGPSPKS--------PPPPSVRYPPPPKQQTCPIDALKLG 137
              +       PP    P   +        P   S    P        +   + G
Sbjct: 440 AAPAAVALAPAPPAQAAPETVAIPVRVAPEPAVASAAPAPAAAPAAARLTPTEEG 494

Length = 618

>gnl|CDD|237864 PRK14950, PRK14950, DNA polymerase III subunits gamma and tau; Provisional

 Score = 61.7 bits (150), Expect = 3e-11
 Identities = 26/102 (25%), Positives = 35/102 (34%), Gaps = 6/102 (5%)

Query: 26  DCSNNPPPPPASKTPNCP-PPPSSPSPKTPPPPPPFVKSPPPPPPVVKSAPPPPPPVAKS 84
           +    P P P    P    P P  P+P     P     +  PP   V+    PPP   + 
Sbjct: 357 EALLVPVPAPQPAKPTAAAPSPVRPTPAPSTRPKAAAAANIPPKEPVRETATPPPVPPRP 416

Query: 85  PPPPPPVVKSPPPPIVKPPPPNGPSPKSPPPPSVRYPPPPKQ 126
             PP P      P + +   P    PK  PP      PP ++
Sbjct: 417 VAPPVPHTPESAPKLTRAAIPVDEKPKYTPP-----APPKEE 453

Length = 585

>gnl|CDD|237030 PRK12270, kgd, alpha-ketoglutarate decarboxylase; Reviewed

 Score = 61.4 bits (150), Expect = 4e-11
 Identities = 14/87 (16%), Positives = 21/87 (24%), Gaps = 2/87 (2%)

Query: 28  SNNPPPPPASKTPNCPPPPSSPSPKTPPPPPPFVKSPPPPPPVVKSAPPPPPPVAKSPPP 87
              P    A          ++ +      P     + P P P   +AP  PP  A +   
Sbjct: 35  DYGPGSTAAPTAA--AAAAAAAASAPAAAPAAKAPAAPAPAPPAAAAPAAPPKPAAAAAA 92

Query: 88  PPPVVKSPPPPIVKPPPPNGPSPKSPP 114
                  P       P       +  P
Sbjct: 93  AAAPAAPPAAAAAAAPAAAAVEDEVTP 119

Length = 1228

>gnl|CDD|223021 PHA03247, PHA03247, large tegument protein UL36; Provisional

 Score = 59.6 bits (144), Expect = 2e-10
 Identities = 30/85 (35%), Positives = 34/85 (40%)

Query: 31   PPPPPASKTPNCPPPPSSPSPKTPPPPPPFVKSPPPPPPVVKSAPPPPPPVAKSPPPPPP 90
            P  PP  +        S+ S   PP  P     P  PPP      PPPPP  + PPPPPP
Sbjct: 2878 PARPPVRRLARPAVSRSTESFALPPDQPERPPQPQAPPPPQPQPQPPPPPQPQPPPPPPP 2937

Query: 91   VVKSPPPPIVKPPPPNGPSPKSPPP 115
              + P  P   P     PS   P P
Sbjct: 2938 RPQPPLAPTTDPAGAGEPSGAVPQP 2962

Length = 3151

>gnl|CDD|237865 PRK14951, PRK14951, DNA polymerase III subunits gamma and tau; Provisional

 Score = 58.6 bits (142), Expect = 3e-10
 Identities = 24/101 (23%), Positives = 28/101 (27%), Gaps = 3/101 (2%)

Query: 35  PASKTPNCPPPPSSPSPKTPPPPPPFVKSPPPPPPVVKSAPPPPPPVAKSPPPPPPVVKS 94
           PA+      P      P  P    P     P        AP   P  A S P  PP    
Sbjct: 366 PAAAAEAAAPAEKKT-PARPEAAAPAAA--PVAQAAAAPAPAAAPAAAASAPAAPPAAAP 422

Query: 95  PPPPIVKPPPPNGPSPKSPPPPSVRYPPPPKQQTCPIDALK 135
           P P           +P + P      P PP Q      A+ 
Sbjct: 423 PAPVAAPAAAAPAAAPAAAPAAVALAPAPPAQAAPETVAIP 463

Length = 618

>gnl|CDD|237030 PRK12270, kgd, alpha-ketoglutarate decarboxylase; Reviewed

 Score = 58.7 bits (143), Expect = 3e-10
 Identities = 17/92 (18%), Positives = 23/92 (25%), Gaps = 9/92 (9%)

Query: 45  PPSSPSPKTPPPPPPFVKSPPPPPPVVKSAPPPPPPVAKSPPPPPPVVKSPPPPIVKPPP 104
           P S+ +P           S P   P   +A  P  P    P    P   +PP P      
Sbjct: 38  PGSTAAPTAAAAAAAAAASAPAAAP---AAKAPAAPAPAPPAAAAP--AAPPKPAAAAAA 92

Query: 105 PNGPSPKSPPPPSVRYPPPPKQQTCPIDALKL 136
              P+              P       +   L
Sbjct: 93  AAAPAAPPAAAA----AAAPAAAAVEDEVTPL 120

Length = 1228

>gnl|CDD|215810 pfam00234, Tryp_alpha_amyl, Protease inhibitor/seed storage/LTP family

 Score = 54.1 bits (130), Expect = 3e-10
 Identities = 27/84 (32%), Positives = 33/84 (39%), Gaps = 10/84 (11%)

Query: 129 CPIDALKLGACVDVLGGLIHIGLGDSAKEKCCPLLQGLADLDAAVCLCTAIRLKALNLIN 188
           C    LKL  C   L G           ++CC  L+ L     A C CTAIR   L  I 
Sbjct: 1   CGQVLLKLAPCAGYLQGGCQ-----VPSQQCCSQLRQLQ----AQCRCTAIRAIVLG-IE 50

Query: 189 LLVPISLQVLVNDCGKYPPAGFQC 212
            + P +   L + CG   P G  C
Sbjct: 51  GINPQAAASLPSMCGVNVPYGIDC 74

This family is composed of trypsin-alpha amylase inhibitors, seed storage proteins and lipid transfer proteins from plants. Length = 74

>gnl|CDD|218191 pfam04652, DUF605, Vta1 like

 Score = 57.8 bits (140), Expect = 5e-10
 Identities = 32/101 (31%), Positives = 41/101 (40%), Gaps = 2/101 (1%)

Query: 28  SNNPPPPPASKTPNCPPPPSSPSPKTPPPPPPFVKSPPPPPPVVKSAPPPPPPVAKSPPP 87
           ++     P+    + P  PS PSP   P  P     PP P       PPP P    +P P
Sbjct: 177 ADPASASPSDPPSSSPGVPSFPSPPEDPSSPSDSSLPPAPSSFQSDTPPPSPESPTNPSP 236

Query: 88  PPPVVKSPPPPIVKPPPPNGPSPKSPPPPSVRYPPPPKQQT 128
           PP     PPPP+ + PP    + K  PP +   P P    T
Sbjct: 237 PPGPAAPPPPPVQQVPPL--STAKPTPPSASATPAPIGGIT 275

Vta1 (VPS20-associated protein 1) is a positive regulator of Vps4. Vps4 is an ATPase that is required in the multivesicular body (MVB) sorting pathway to dissociate the endosomal sorting complex required for transport (ESCRT). Vta1 promotes correct assembly of Vps4 and stimulates its ATPase activity through its conserved Vta1/SBP1/LIP5 region. Length = 315

>gnl|CDD|237030 PRK12270, kgd, alpha-ketoglutarate decarboxylase; Reviewed

 Score = 56.4 bits (137), Expect = 2e-09
 Identities = 15/74 (20%), Positives = 23/74 (31%), Gaps = 3/74 (4%)

Query: 43  PPPPSSPSPKTPPPPPPFVKSPPPPPPVVKSAPPPPPPVAKSPPPPPPVVKSPPPPIVKP 102
           P   ++P+                P     +AP P PP A +P  PP    +        
Sbjct: 38  PGSTAAPTAAAAAAAAAASAPAAAPAAKAPAAPAPAPPAAAAPAAPPKPAAAAAAA---A 94

Query: 103 PPPNGPSPKSPPPP 116
            P   P+  +   P
Sbjct: 95  APAAPPAAAAAAAP 108

Length = 1228

>gnl|CDD|223021 PHA03247, PHA03247, large tegument protein UL36; Provisional

 Score = 56.1 bits (135), Expect = 3e-09
 Identities = 44/142 (30%), Positives = 50/142 (35%), Gaps = 25/142 (17%)

Query: 31   PPPPPASKTPNCPPPPSSPSPKTPP------PPPPFVKSPPPPPPVVKSAPPPPPPVAK- 83
            P PPP S  P  PPPP  P P + P      P     + PP   P  K A P  PPV + 
Sbjct: 2827 PLPPPTSAQPTAPPPPPGPPPPSLPLGGSVAPGGDVRRRPPSRSPAAKPAAPARPPVRRL 2886

Query: 84   ------------------SPPPPPPVVKSPPPPIVKPPPPNGPSPKSPPPPSVRYPPPPK 125
                                 PP P    PP P  +PPPP  P P  PPPP  + P  P 
Sbjct: 2887 ARPAVSRSTESFALPPDQPERPPQPQAPPPPQPQPQPPPPPQPQPPPPPPPRPQPPLAPT 2946

Query: 126  QQTCPIDALKLGACVDVLGGLI 147
                             LG L+
Sbjct: 2947 TDPAGAGEPSGAVPQPWLGALV 2968

Length = 3151

>gnl|CDD|237030 PRK12270, kgd, alpha-ketoglutarate decarboxylase; Reviewed

 Score = 55.3 bits (134), Expect = 4e-09
 Identities = 13/81 (16%), Positives = 22/81 (27%)

Query: 36  ASKTPNCPPPPSSPSPKTPPPPPPFVKSPPPPPPVVKSAPPPPPPVAKSPPPPPPVVKSP 95
           A   P     P++ +            +P    P   +  PP      +PP P     + 
Sbjct: 34  ADYGPGSTAAPTAAAAAAAAAASAPAAAPAAKAPAAPAPAPPAAAAPAAPPKPAAAAAAA 93

Query: 96  PPPIVKPPPPNGPSPKSPPPP 116
             P   P      +P +    
Sbjct: 94  AAPAAPPAAAAAAAPAAAAVE 114

Length = 1228

>gnl|CDD|223021 PHA03247, PHA03247, large tegument protein UL36; Provisional

 Score = 55.3 bits (133), Expect = 6e-09
 Identities = 42/132 (31%), Positives = 48/132 (36%), Gaps = 21/132 (15%)

Query: 20   LTSLACDCSNNPPPPPASKTPNCPPPPSSPSPKTP----PPPPPFVKSPPPPPPVVKSAP 75
            L   A      PPP  A  T   PPP   P          P     + PP   P  K A 
Sbjct: 2818 LPPAASPAGPLPPPTSAQPTAPPPPPGPPPPSLPLGGSVAPGGDVRRRPPSRSPAAKPAA 2877

Query: 76   PPPPPVAK-----------------SPPPPPPVVKSPPPPIVKPPPPNGPSPKSPPPPSV 118
            P  PPV +                   P  PP  ++PPPP  +P PP  P P+ PPPP  
Sbjct: 2878 PARPPVRRLARPAVSRSTESFALPPDQPERPPQPQAPPPPQPQPQPPPPPQPQPPPPPPP 2937

Query: 119  RYPPPPKQQTCP 130
            R  PP    T P
Sbjct: 2938 RPQPPLAPTTDP 2949

Length = 3151

>gnl|CDD|218191 pfam04652, DUF605, Vta1 like

 Score = 54.3 bits (131), Expect = 6e-09
 Identities = 28/100 (28%), Positives = 34/100 (34%), Gaps = 4/100 (4%)

Query: 31  PPPPPASKTPNCPPPPSSPSPKTPPPPPPFVKSPPPPPPVVKSAPPPPPPVAKSPPPPPP 90
                       P   S   P +  P  P   SPP  P     +  PP P +     PPP
Sbjct: 167 NSDNSFPGEDADPASASPSDPPSSSPGVPSFPSPPEDPSSPSDSSLPPAPSSFQSDTPPP 226

Query: 91  VVKSPPPPIVKPPPPNGPSPKSPPPPSVRYPPPPKQQTCP 130
             +SP      P PP GP+   PPP     P    + T P
Sbjct: 227 SPESPTN----PSPPPGPAAPPPPPVQQVPPLSTAKPTPP 262

Vta1 (VPS20-associated protein 1) is a positive regulator of Vps4. Vps4 is an ATPase that is required in the multivesicular body (MVB) sorting pathway to dissociate the endosomal sorting complex required for transport (ESCRT). Vta1 promotes correct assembly of Vps4 and stimulates its ATPase activity through its conserved Vta1/SBP1/LIP5 region. Length = 315

>gnl|CDD|237862 PRK14948, PRK14948, DNA polymerase III subunits gamma and tau; Provisional

 Score = 54.6 bits (132), Expect = 8e-09
 Identities = 23/78 (29%), Positives = 26/78 (33%)

Query: 47  SSPSPKTPPPPPPFVKSPPPPPPVVKSAPPPPPPVAKSPPPPPPVVKSPPPPIVKPPPPN 106
           S  +  T   PPP  KSPPPP P      P       +PPPPPP             P +
Sbjct: 514 SGSASNTAKTPPPPQKSPPPPAPTPPLPQPTATAPPPTPPPPPPTATQASSNAPAQIPAD 573

Query: 107 GPSPKSPPPPSVRYPPPP 124
              P   P      P   
Sbjct: 574 SSPPPPIPEEPTPSPTKD 591

Length = 620

>gnl|CDD|237864 PRK14950, PRK14950, DNA polymerase III subunits gamma and tau; Provisional

 Score = 54.0 bits (130), Expect = 1e-08
 Identities = 30/103 (29%), Positives = 39/103 (37%), Gaps = 18/103 (17%)

Query: 36  ASKTPNCPPPPSSPSPKTPPPPPPFVKSPPPPPPVVKSAPPPPPPVAKSPPPPPPVVKSP 95
           A   P   P P+ P+   P P  P       P     +  PP  PV ++  PPP      
Sbjct: 358 ALLVPVPAPQPAKPTAAAPSPVRPTPAPSTRPKAAAAANIPPKEPVRETATPPPV----- 412

Query: 96  PPPIVKPPPPNGPSPKSPPP-----------PSVRYPPPPKQQ 127
           PP  V PP P   +P+S P            P    P PPK++
Sbjct: 413 PPRPVAPPVP--HTPESAPKLTRAAIPVDEKPKYTPPAPPKEE 453

Length = 585

>gnl|CDD|218191 pfam04652, DUF605, Vta1 like

 Score = 53.5 bits (129), Expect = 1e-08
 Identities = 26/102 (25%), Positives = 35/102 (34%), Gaps = 6/102 (5%)

Query: 29  NNPPPPPASKTPNCPPPPSSPSPKTPPPPPPFVKSPPPPPPVVKSAPPPPPPVAKSPPPP 88
            +      +   + P   + P+  +P  PP      P  P        P  P   S PP 
Sbjct: 159 EDADVATTNSDNSFPGEDADPASASPSDPPSSSPGVPSFPS---PPEDPSSPSDSSLPPA 215

Query: 89  PPVVKSPPPPIVKPPPPNGPSPKSPPPPSVRYPPPPKQQTCP 130
           P   +S  PP     P N   P  PP P+   PPP +Q    
Sbjct: 216 PSSFQSDTPPPSPESPTN---PSPPPGPAAPPPPPVQQVPPL 254

Vta1 (VPS20-associated protein 1) is a positive regulator of Vps4. Vps4 is an ATPase that is required in the multivesicular body (MVB) sorting pathway to dissociate the endosomal sorting complex required for transport (ESCRT). Vta1 promotes correct assembly of Vps4 and stimulates its ATPase activity through its conserved Vta1/SBP1/LIP5 region. Length = 315

>gnl|CDD|223021 PHA03247, PHA03247, large tegument protein UL36; Provisional

 Score = 53.4 bits (128), Expect = 2e-08
 Identities = 33/102 (32%), Positives = 42/102 (41%), Gaps = 1/102 (0%)

Query: 32   PPPPASKTPNCPPPPSSPSPKTPPPPPPFVKSPPPPPPVVKSAPPPPPPVAKSPPPPPPV 91
             P   S T    PPP  P+P+ P P      +P PP P       P  P A +PP  P  
Sbjct: 2689 RPTVGSLTSLADPPPPPPTPE-PAPHALVSATPLPPGPAAARQASPALPAAPAPPAVPAG 2747

Query: 92   VKSPPPPIVKPPPPNGPSPKSPPPPSVRYPPPPKQQTCPIDA 133
              +P  P     PP    P +P PP+     PP++ T P  A
Sbjct: 2748 PATPGGPARPARPPTTAGPPAPAPPAAPAAGPPRRLTRPAVA 2789

Length = 3151

>gnl|CDD|237862 PRK14948, PRK14948, DNA polymerase III subunits gamma and tau; Provisional

 Score = 53.0 bits (128), Expect = 2e-08
 Identities = 20/78 (25%), Positives = 25/78 (32%)

Query: 40  PNCPPPPSSPSPKTPPPPPPFVKSPPPPPPVVKSAPPPPPPVAKSPPPPPPVVKSPPPPI 99
            N    P  P    PPP P      P       + PPPPP   ++    P  + +   P 
Sbjct: 518 SNTAKTPPPPQKSPPPPAPTPPLPQPTATAPPPTPPPPPPTATQASSNAPAQIPADSSPP 577

Query: 100 VKPPPPNGPSPKSPPPPS 117
              P    PSP     P 
Sbjct: 578 PPIPEEPTPSPTKDSSPE 595

Length = 620

>gnl|CDD|220392 pfam09770, PAT1, Topoisomerase II-associated protein PAT1

 Score = 52.8 bits (127), Expect = 3e-08
 Identities = 33/109 (30%), Positives = 40/109 (36%), Gaps = 12/109 (11%)

Query: 31  PPPPPASKTPNCPPPPSSPSPKTPPPPPPFVKSPPP------------PPPVVKSAPPPP 78
           P PP        PP  ++   + PP  PP    PP             P P    A PP 
Sbjct: 173 PQPPQQVLPQGMPPRQAAFPQQGPPEQPPGYPQPPQGHPEQVQPQQFLPAPSQAPAQPPL 232

Query: 79  PPVAKSPPPPPPVVKSPPPPIVKPPPPNGPSPKSPPPPSVRYPPPPKQQ 127
           PP     PPP    + P      PPPP  P  +   PP  +  PPP+ Q
Sbjct: 233 PPQLPQQPPPLQQPQFPGLSQQMPPPPPQPPQQQQQPPQPQAQPPPQNQ 281

Members of this family are necessary for accurate chromosome transmission during cell division. Length = 804

>gnl|CDD|237862 PRK14948, PRK14948, DNA polymerase III subunits gamma and tau; Provisional

 Score = 52.3 bits (126), Expect = 4e-08
 Identities = 22/81 (27%), Positives = 27/81 (33%)

Query: 37  SKTPNCPPPPSSPSPKTPPPPPPFVKSPPPPPPVVKSAPPPPPPVAKSPPPPPPVVKSPP 96
           S++ +      +P P    PPPP    P P P      P PPPP   +           P
Sbjct: 512 SQSGSASNTAKTPPPPQKSPPPPAPTPPLPQPTATAPPPTPPPPPPTATQASSNAPAQIP 571

Query: 97  PPIVKPPPPNGPSPKSPPPPS 117
                PPP       SP   S
Sbjct: 572 ADSSPPPPIPEEPTPSPTKDS 592

Length = 620

>gnl|CDD|237057 PRK12323, PRK12323, DNA polymerase III subunits gamma and tau; Provisional

 Score = 52.2 bits (125), Expect = 4e-08
 Identities = 19/94 (20%), Positives = 30/94 (31%), Gaps = 1/94 (1%)

Query: 31  PPPPPASKTPNCPPPPSSPSPKTPPPPP-PFVKSPPPPPPVVKSAPPPPPPVAKSPPPPP 89
            P    +         ++P+ ++P P      +      P    AP P P  A +    P
Sbjct: 405 APAAAPAAAAAARAVAAAPARRSPAPEALAAARQASARGPGGAPAPAPAPAAAPAAAARP 464

Query: 90  PVVKSPPPPIVKPPPPNGPSPKSPPPPSVRYPPP 123
                 P        P   +P + P P+   PPP
Sbjct: 465 AAAGPRPVAAAAAAAPARAAPAAAPAPADDDPPP 498

Length = 700

>gnl|CDD|237874 PRK14971, PRK14971, DNA polymerase III subunits gamma and tau; Provisional

 Score = 52.1 bits (125), Expect = 6e-08
 Identities = 25/97 (25%), Positives = 31/97 (31%), Gaps = 5/97 (5%)

Query: 31  PPPPPASKTPNCPPPPSSPSPKTPPPPPPFVKSPPPPPPVVKSAPPPPPPVAKSPPPPPP 90
             P P++     P P  S +   P  P      P   PP V   PP   PV     PP  
Sbjct: 388 AAPQPSAAAAASPSPSQSSAAAQPSAPQS-ATQPAGTPPTVSVDPPAAVPV----NPPST 442

Query: 91  VVKSPPPPIVKPPPPNGPSPKSPPPPSVRYPPPPKQQ 127
             ++  P   K       S  S   PS   P   K +
Sbjct: 443 APQAVRPAQFKEEKKIPVSKVSSLGPSTLRPIQEKAE 479

Length = 614

>gnl|CDD|218191 pfam04652, DUF605, Vta1 like

 Score = 51.2 bits (123), Expect = 7e-08
 Identities = 26/101 (25%), Positives = 34/101 (33%), Gaps = 4/101 (3%)

Query: 30  NPPPPPASKTPNCPPPPSSPSPKTPPPPPPFVKSPPPPPPVVKSAPPPPPPVAKSPPPPP 89
           NP PP   +  +     ++     P        + P  PP      P  P   + P  P 
Sbjct: 149 NPGPPLDEEDEDADVATTNSDNSFPGEDADPASASPSDPPSSSPGVPSFPSPPEDPSSPS 208

Query: 90  PVVKSPPPPI---VKPPPPNGPSPKSPPPPSVRYPPPPKQQ 127
                PP P       PPP+  SP +P PP     PPP   
Sbjct: 209 DS-SLPPAPSSFQSDTPPPSPESPTNPSPPPGPAAPPPPPV 248

Vta1 (VPS20-associated protein 1) is a positive regulator of Vps4. Vps4 is an ATPase that is required in the multivesicular body (MVB) sorting pathway to dissociate the endosomal sorting complex required for transport (ESCRT). Vta1 promotes correct assembly of Vps4 and stimulates its ATPase activity through its conserved Vta1/SBP1/LIP5 region. Length = 315

>gnl|CDD|220392 pfam09770, PAT1, Topoisomerase II-associated protein PAT1

 Score = 51.7 bits (124), Expect = 8e-08
 Identities = 29/94 (30%), Positives = 34/94 (36%), Gaps = 3/94 (3%)

Query: 31  PPPPPASKTPNCPPPPSSPSPKTPPPPPPFVKSPPPPPPVVKSAPPPPPPVAKSPPPPPP 90
           P   P    P    P  S +P  PP PP     P  PPP+ +   P        PPP PP
Sbjct: 207 PQGHPEQVQPQQFLPAPSQAPAQPPLPPQ---LPQQPPPLQQPQFPGLSQQMPPPPPQPP 263

Query: 91  VVKSPPPPIVKPPPPNGPSPKSPPPPSVRYPPPP 124
             +  PP     PPP       P  P  +  P P
Sbjct: 264 QQQQQPPQPQAQPPPQNQPTPHPGLPQGQNAPLP 297

Members of this family are necessary for accurate chromosome transmission during cell division. Length = 804

>gnl|CDD|237030 PRK12270, kgd, alpha-ketoglutarate decarboxylase; Reviewed

 Score = 51.4 bits (124), Expect = 1e-07
 Identities = 13/82 (15%), Positives = 19/82 (23%), Gaps = 8/82 (9%)

Query: 21  TSLACDCSNNPPPPPASKTPNCPPPPSSPSPKTPPPPPPFVKSPPPPPPVVKSAPPPPPP 80
            + A   +    P  A        P  +P     P          PP P   +A    P 
Sbjct: 46  AAAAAAAAAASAPAAAPAAKAPAAPAPAPPAAAAP--------AAPPKPAAAAAAAAAPA 97

Query: 81  VAKSPPPPPPVVKSPPPPIVKP 102
              +         +     V P
Sbjct: 98  APPAAAAAAAPAAAAVEDEVTP 119

Length = 1228

>gnl|CDD|223021 PHA03247, PHA03247, large tegument protein UL36; Provisional

 Score = 51.5 bits (123), Expect = 1e-07
 Identities = 32/101 (31%), Positives = 34/101 (33%), Gaps = 2/101 (1%)

Query: 32   PPPPASKTPNCPPPPSSPSPKTPPPPPPFVKSPPPPPPVVKSAPPPPPPVAKSPPPPP-- 89
            P    S      PP     P  P  PPP    P PPPP     PPPPPP  + P  P   
Sbjct: 2889 PAVSRSTESFALPPDQPERPPQPQAPPPPQPQPQPPPPPQPQPPPPPPPRPQPPLAPTTD 2948

Query: 90   PVVKSPPPPIVKPPPPNGPSPKSPPPPSVRYPPPPKQQTCP 130
            P     P   V  P      P     P  R P P   +  P
Sbjct: 2949 PAGAGEPSGAVPQPWLGALVPGRVAVPRFRVPQPAPSREAP 2989

Length = 3151

>gnl|CDD|236090 PRK07764, PRK07764, DNA polymerase III subunits gamma and tau; Validated

 Score = 51.1 bits (123), Expect = 1e-07
 Identities = 21/87 (24%), Positives = 26/87 (29%)

Query: 31  PPPPPASKTPNCPPPPSSPSPKTPPPPPPFVKSPPPPPPVVKSAPPPPPPVAKSPPPPPP 90
           P    A      P P  +P+P   PP P         P    +A P   P       P P
Sbjct: 417 PAAAAAPAPAAAPQPAPAPAPAPAPPSPAGNAPAGGAPSPPPAAAPSAQPAPAPAAAPEP 476

Query: 91  VVKSPPPPIVKPPPPNGPSPKSPPPPS 117
                P P   P P   P+  + P   
Sbjct: 477 TAAPAPAPPAAPAPAAAPAAPAAPAAP 503

Length = 824

>gnl|CDD|223021 PHA03247, PHA03247, large tegument protein UL36; Provisional

 Score = 50.7 bits (121), Expect = 2e-07
 Identities = 29/108 (26%), Positives = 36/108 (33%), Gaps = 7/108 (6%)

Query: 30   NPPPPPASKTPNCPPPPSSPSPKTPPPPPPFVKSPPPPP-------PVVKSAPPPPPPVA 82
                PPA+      PPP+S  P  PPPPP       P          V +  P   P   
Sbjct: 2815 AAALPPAASPAGPLPPPTSAQPTAPPPPPGPPPPSLPLGGSVAPGGDVRRRPPSRSPAAK 2874

Query: 83   KSPPPPPPVVKSPPPPIVKPPPPNGPSPKSPPPPSVRYPPPPKQQTCP 130
             + P  PPV +   P + +        P  P  P     PPP Q    
Sbjct: 2875 PAAPARPPVRRLARPAVSRSTESFALPPDQPERPPQPQAPPPPQPQPQ 2922

Length = 3151

>gnl|CDD|237862 PRK14948, PRK14948, DNA polymerase III subunits gamma and tau; Provisional

 Score = 50.3 bits (121), Expect = 2e-07
 Identities = 21/74 (28%), Positives = 25/74 (33%)

Query: 43  PPPPSSPSPKTPPPPPPFVKSPPPPPPVVKSAPPPPPPVAKSPPPPPPVVKSPPPPIVKP 102
           P    S       P  P     P PPP       P    A + P PPP   SPP P+   
Sbjct: 361 PSAFISEIANASAPANPTPAPNPSPPPAPIQPSAPKTKQAATTPSPPPAKASPPIPVPAE 420

Query: 103 PPPNGPSPKSPPPP 116
           P    P+P +    
Sbjct: 421 PTEPSPTPPANAAN 434

Length = 620

>gnl|CDD|184918 PRK14954, PRK14954, DNA polymerase III subunits gamma and tau; Provisional

 Score = 50.3 bits (120), Expect = 2e-07
 Identities = 25/81 (30%), Positives = 29/81 (35%), Gaps = 3/81 (3%)

Query: 63  SPPPPPPVVKSAPPPPPPVAKSPPPPPPVVKSPPPPIVKPPPPNGPSPKSPPP--PSVRY 120
           SP   P V K AP P  P     P P         P   P P + P+P+  PP   S   
Sbjct: 383 SPAGSPDVKKKAPEPDLPQPDRHPGPAKPEAPGARPAELPSPASAPTPEQQPPVARSAPL 442

Query: 121 PPPPKQQTCPIDALKLGACVD 141
           PP P+       A      VD
Sbjct: 443 PPSPQASAPRNVA-SGKPGVD 462

Length = 620

>gnl|CDD|236090 PRK07764, PRK07764, DNA polymerase III subunits gamma and tau; Validated

 Score = 50.0 bits (120), Expect = 3e-07
 Identities = 25/103 (24%), Positives = 29/103 (28%), Gaps = 4/103 (3%)

Query: 31  PPPPPASKTPNCPPPPSSPSPKTPPPPPPFVKSPPPPPPVVKSAPPPPPPVAKSPPPPPP 90
            P   A      P P ++P P   P P P     PP P     A   P P   + P   P
Sbjct: 411 APAAAAPAAAAAPAPAAAPQPAPAPAPAP----APPSPAGNAPAGGAPSPPPAAAPSAQP 466

Query: 91  VVKSPPPPIVKPPPPNGPSPKSPPPPSVRYPPPPKQQTCPIDA 133
                  P     P   P     P  +   P  P       DA
Sbjct: 467 APAPAAAPEPTAAPAPAPPAAPAPAAAPAAPAAPAAPAGADDA 509

Length = 824

>gnl|CDD|223021 PHA03247, PHA03247, large tegument protein UL36; Provisional

 Score = 49.6 bits (118), Expect = 4e-07
 Identities = 30/113 (26%), Positives = 36/113 (31%), Gaps = 7/113 (6%)

Query: 33   PPPASKTPNCPPPPSSPSPKTPPPPPPFVKSPPPPPPVVKSAPPPPP-----PVAKSPPP 87
            PPP   TP   P     +   PP P    ++ P  P     APP  P     P   + P 
Sbjct: 2701 PPPPPPTPEPAPHALVSATPLPPGPAAARQASPALP--AAPAPPAVPAGPATPGGPARPA 2758

Query: 88   PPPVVKSPPPPIVKPPPPNGPSPKSPPPPSVRYPPPPKQQTCPIDALKLGACV 140
             PP    PP P     P  GP  +   P         +    P D     A V
Sbjct: 2759 RPPTTAGPPAPAPPAAPAAGPPRRLTRPAVASLSESRESLPSPWDPADPPAAV 2811

Length = 3151

>gnl|CDD|237862 PRK14948, PRK14948, DNA polymerase III subunits gamma and tau; Provisional

 Score = 49.6 bits (119), Expect = 4e-07
 Identities = 21/78 (26%), Positives = 26/78 (33%)

Query: 32  PPPPASKTPNCPPPPSSPSPKTPPPPPPFVKSPPPPPPVVKSAPPPPPPVAKSPPPPPPV 91
           P    S+  N   P +      P PPP  ++   P      + P PPP  A  P P P  
Sbjct: 361 PSAFISEIANASAPANPTPAPNPSPPPAPIQPSAPKTKQAATTPSPPPAKASPPIPVPAE 420

Query: 92  VKSPPPPIVKPPPPNGPS 109
              P P          PS
Sbjct: 421 PTEPSPTPPANAANAPPS 438

Length = 620

>gnl|CDD|237874 PRK14971, PRK14971, DNA polymerase III subunits gamma and tau; Provisional

 Score = 49.0 bits (117), Expect = 6e-07
 Identities = 22/94 (23%), Positives = 27/94 (28%), Gaps = 1/94 (1%)

Query: 35  PASKTPNCPPPPSSPSPKTPPPPPPFVKSPPPPPPVVKSAPPPPPPVAKSPPPPPPVVKS 94
              + P     P    P   P P     + P P     +A P  P  A  P   PP V  
Sbjct: 370 SGGRGPKQHIKPVFTQPAAAPQPSAAAAASPSPSQSSAAAQPSAPQSATQPAGTPPTVSV 429

Query: 95  PPPPIVKPPPPNGPSPKSPPPP-SVRYPPPPKQQ 127
            PP  V   PP+       P         P  + 
Sbjct: 430 DPPAAVPVNPPSTAPQAVRPAQFKEEKKIPVSKV 463

Length = 614

>gnl|CDD|236138 PRK07994, PRK07994, DNA polymerase III subunits gamma and tau; Validated

 Score = 49.1 bits (118), Expect = 6e-07
 Identities = 23/105 (21%), Positives = 29/105 (27%), Gaps = 5/105 (4%)

Query: 18  TLLTSLACDCSNNPPPPPASKTPNCPPPPSSPSPKTPPPPPPFVKSPPPPPPVVKSAPPP 77
           TLL  LA   +   P P        P   +  +        P      PPPP   SAP  
Sbjct: 352 TLLRMLAFHPAAPLPEPEVPPQSAAPAASAQATAAPTAAVAPPQAPAVPPPPA--SAPQQ 409

Query: 78  PPPVAKSPPPPPPVVKSPPPPIVKPPPPNGPSPKSPPPPSVRYPP 122
            P V         +                 + KS P  + R  P
Sbjct: 410 APAVPLPETTSQLLAARQQLQ---RAQGATKAKKSEPAAASRARP 451

Length = 647

>gnl|CDD|218191 pfam04652, DUF605, Vta1 like

 Score = 48.1 bits (115), Expect = 7e-07
 Identities = 26/109 (23%), Positives = 29/109 (26%), Gaps = 6/109 (5%)

Query: 26  DCSNNPPPPPASKTPNCPPPPSSPSPKTPPPPPPFVKSPPPPPPVVKSAPPPPPPVAKSP 85
           D S        +      PP SSP   + P PP    SP           P        P
Sbjct: 169 DNSFPGEDADPASASPSDPPSSSPGVPSFPSPPEDPSSPSDSSL---PPAPSSFQSDTPP 225

Query: 86  --PPPPPVVKSPPPPIVKPPPPNGPSPKSP-PPPSVRYPPPPKQQTCPI 131
             P  P     PP P   PPPP    P      P+             I
Sbjct: 226 PSPESPTNPSPPPGPAAPPPPPVQQVPPLSTAKPTPPSASATPAPIGGI 274

Vta1 (VPS20-associated protein 1) is a positive regulator of Vps4. Vps4 is an ATPase that is required in the multivesicular body (MVB) sorting pathway to dissociate the endosomal sorting complex required for transport (ESCRT). Vta1 promotes correct assembly of Vps4 and stimulates its ATPase activity through its conserved Vta1/SBP1/LIP5 region. Length = 315

>gnl|CDD|237871 PRK14965, PRK14965, DNA polymerase III subunits gamma and tau; Provisional

 Score = 48.6 bits (116), Expect = 7e-07
 Identities = 22/66 (33%), Positives = 29/66 (43%), Gaps = 3/66 (4%)

Query: 31  PPPPPASKTPNCPPPPSSPSPKTPPPPPPFVKSPPPPPPVVKSAPPPPPPVAKSPPPPPP 90
           P PP A+     P  P++P P   PP PP   + P  P   + AP P PP A +PP    
Sbjct: 382 PAPPSAAWGAPTPAAPAAPPPAAAPPVPP---AAPARPAAARPAPAPAPPAAAAPPARSA 438

Query: 91  VVKSPP 96
              +  
Sbjct: 439 DPAAAA 444

Length = 576

>gnl|CDD|236090 PRK07764, PRK07764, DNA polymerase III subunits gamma and tau; Validated

 Score = 48.4 bits (116), Expect = 8e-07
 Identities = 27/94 (28%), Positives = 35/94 (37%)

Query: 31  PPPPPASKTPNCPPPPSSPSPKTPPPPPPFVKSPPPPPPVVKSAPPPPPPVAKSPPPPPP 90
             P  A+  P   P P++ +P     P P     P P P    APP P   A +   P P
Sbjct: 397 AAPSAAAAAPAAAPAPAAAAPAAAAAPAPAAAPQPAPAPAPAPAPPSPAGNAPAGGAPSP 456

Query: 91  VVKSPPPPIVKPPPPNGPSPKSPPPPSVRYPPPP 124
              + P     P P   P P + P P+    P P
Sbjct: 457 PPAAAPSAQPAPAPAAAPEPTAAPAPAPPAAPAP 490

Length = 824

>gnl|CDD|237030 PRK12270, kgd, alpha-ketoglutarate decarboxylase; Reviewed

 Score = 48.0 bits (115), Expect = 1e-06
 Identities = 16/73 (21%), Positives = 25/73 (34%), Gaps = 1/73 (1%)

Query: 30  NPPPPPASKTPNCP-PPPSSPSPKTPPPPPPFVKSPPPPPPVVKSAPPPPPPVAKSPPPP 88
            P   PA+K P  P P P + +    PP P    +    P    +A     P A +    
Sbjct: 57  APAAAPAAKAPAAPAPAPPAAAAPAAPPKPAAAAAAAAAPAAPPAAAAAAAPAAAAVEDE 116

Query: 89  PPVVKSPPPPIVK 101
              ++     + K
Sbjct: 117 VTPLRGAAAAVAK 129

Length = 1228

>gnl|CDD|223021 PHA03247, PHA03247, large tegument protein UL36; Provisional

 Score = 48.4 bits (115), Expect = 1e-06
 Identities = 32/115 (27%), Positives = 39/115 (33%), Gaps = 5/115 (4%)

Query: 31   PPPPPASKTPNCPPPPSSPSPKTPPPPPPFVKSPPPPPPVVKSAPP-----PPPPVAKSP 85
            P  P    TP  P  P+ P     PP P    +P   PP   + P             SP
Sbjct: 2742 PAVPAGPATPGGPARPARPPTTAGPPAPAPPAAPAAGPPRRLTRPAVASLSESRESLPSP 2801

Query: 86   PPPPPVVKSPPPPIVKPPPPNGPSPKSPPPPSVRYPPPPKQQTCPIDALKLGACV 140
              P     +   P    PP   P+   PPP S +   PP     P  +L LG  V
Sbjct: 2802 WDPADPPAAVLAPAAALPPAASPAGPLPPPTSAQPTAPPPPPGPPPPSLPLGGSV 2856

Length = 3151

>gnl|CDD|223021 PHA03247, PHA03247, large tegument protein UL36; Provisional

 Score = 48.4 bits (115), Expect = 1e-06
 Identities = 39/117 (33%), Positives = 45/117 (38%), Gaps = 6/117 (5%)

Query: 20   LTSLACDCSNNPPPPPASKTPNCPPPPSSPSPKTPP-PPPPFVKSPPPPPPVVKSAPPPP 78
            L  LA D + +PPPP     P   P  S P P+  P P  P V S    P     +  P 
Sbjct: 2540 LEELASDDAGDPPPPLPPAAPPAAPDRSVPPPRPAPRPSEPAVTSRARRPDAPPQSARPR 2599

Query: 79   PPVAKSPPPPPPVVKSPPPPIVKPPPPNGPSPKS-----PPPPSVRYPPPPKQQTCP 130
             PV     P  P   SP PP    P P  PSP        P P    PPP + +  P
Sbjct: 2600 APVDDRGDPRGPAPPSPLPPDTHAPDPPPPSPSPAANEPDPHPPPTVPPPERPRDDP 2656

Length = 3151

>gnl|CDD|223021 PHA03247, PHA03247, large tegument protein UL36; Provisional

 Score = 48.4 bits (115), Expect = 1e-06
 Identities = 30/115 (26%), Positives = 39/115 (33%), Gaps = 14/115 (12%)

Query: 30   NPPPPPASKTPNCPPPPSSPSPKTPPPPPPFVKSPPPPPPVVKSAPPPPP--------PV 81
            +P  PPA+        P + SP  P PPP   +   PPPP     P  P          V
Sbjct: 2803 DPADPPAAVLAPAAALPPAASPAGPLPPPTSAQPTAPPPPPGPPPPSLPLGGSVAPGGDV 2862

Query: 82   AKSPPPPPPVVKSPPPP------IVKPPPPNGPSPKSPPPPSVRYPPPPKQQTCP 130
             + PP   P  K   P       + +P         + PP     PP P+    P
Sbjct: 2863 RRRPPSRSPAAKPAAPARPPVRRLARPAVSRSTESFALPPDQPERPPQPQAPPPP 2917

Length = 3151

>gnl|CDD|223021 PHA03247, PHA03247, large tegument protein UL36; Provisional

 Score = 48.0 bits (114), Expect = 1e-06
 Identities = 29/97 (29%), Positives = 32/97 (32%), Gaps = 8/97 (8%)

Query: 31   PPPPPASKTPNCPPPPSSPSPKTPPPPPPFVKSPPPPPPVVKSAPPPPPPVAKSPPPPPP 90
            PP  P       PP P +P P  P P PP    P PPPP      PP  P         P
Sbjct: 2901 PPDQPER-----PPQPQAPPPPQPQPQPPPPPQPQPPPPPPPRPQPPLAPTTDPAGAGEP 2955

Query: 91   VVKSPPPPIVKPPPPNGPSPK---SPPPPSVRYPPPP 124
                P P +    P     P+     P PS   P   
Sbjct: 2956 SGAVPQPWLGALVPGRVAVPRFRVPQPAPSREAPASS 2992

Length = 3151

>gnl|CDD|237862 PRK14948, PRK14948, DNA polymerase III subunits gamma and tau; Provisional

 Score = 47.7 bits (114), Expect = 1e-06
 Identities = 18/75 (24%), Positives = 22/75 (29%), Gaps = 3/75 (4%)

Query: 43  PPPPSSPSPKTPPPPPPFVKSPPPPPPVVKSAPPPPPPVAKSPPPPPPVVKSPPPPIVKP 102
               +S      P P P     P  P   K+      P        PP    P P     
Sbjct: 367 EIANASAPANPTPAPNPSPPPAPIQPSAPKTKQAATTPSPPPAKASPP---IPVPAEPTE 423

Query: 103 PPPNGPSPKSPPPPS 117
           P P  P+  +  PPS
Sbjct: 424 PSPTPPANAANAPPS 438

Length = 620

>gnl|CDD|236090 PRK07764, PRK07764, DNA polymerase III subunits gamma and tau; Validated

 Score = 48.1 bits (115), Expect = 1e-06
 Identities = 19/94 (20%), Positives = 22/94 (23%)

Query: 31  PPPPPASKTPNCPPPPSSPSPKTPPPPPPFVKSPPPPPPVVKSAPPPPPPVAKSPPPPPP 90
            P   A       P  +       P           P P    AP P PP      P   
Sbjct: 393 APAAAAPSAAAAAPAAAPAPAAAAPAAAAAPAPAAAPQPAPAPAPAPAPPSPAGNAPAGG 452

Query: 91  VVKSPPPPIVKPPPPNGPSPKSPPPPSVRYPPPP 124
               PP       P   P+    P  +    PP 
Sbjct: 453 APSPPPAAAPSAQPAPAPAAAPEPTAAPAPAPPA 486

Length = 824

>gnl|CDD|236138 PRK07994, PRK07994, DNA polymerase III subunits gamma and tau; Validated

 Score = 47.9 bits (115), Expect = 1e-06
 Identities = 18/106 (16%), Positives = 27/106 (25%), Gaps = 9/106 (8%)

Query: 31  PPPPPASKTPNCPPPPSSPSPKTPPPPPPFVKSPPPPPPVVKSAPPPPPPVAK------- 83
             PP ++         ++P+    PP  P V  PP   P    A P P   ++       
Sbjct: 369 EVPPQSAAPAASAQATAAPTAAVAPPQAPAVPPPPASAPQQAPAVPLPETTSQLLAARQQ 428

Query: 84  --SPPPPPPVVKSPPPPIVKPPPPNGPSPKSPPPPSVRYPPPPKQQ 127
                      KS P    +  P N    +                
Sbjct: 429 LQRAQGATKAKKSEPAAASRARPVNSALERLASVRPAPSALEKAPA 474

Length = 647

>gnl|CDD|240289 PTZ00144, PTZ00144, dihydrolipoamide succinyltransferase; Provisional

 Score = 47.8 bits (114), Expect = 1e-06
 Identities = 22/69 (31%), Positives = 25/69 (36%)

Query: 51  PKTPPPPPPFVKSPPPPPPVVKSAPPPPPPVAKSPPPPPPVVKSPPPPIVKPPPPNGPSP 110
           P   P      K+    P   K+A P P P A S P PP   K P P     PPP   + 
Sbjct: 125 PAAAPAAAAAAKAEKTTPEKPKAAAPTPEPPAASKPTPPAAAKPPEPAPAAKPPPTPVAR 184

Query: 111 KSPPPPSVR 119
             P    V 
Sbjct: 185 ADPRETRVP 193

Length = 418

>gnl|CDD|218621 pfam05518, Totivirus_coat, Totivirus coat protein

 Score = 47.9 bits (114), Expect = 1e-06
 Identities = 17/83 (20%), Positives = 20/83 (24%), Gaps = 2/83 (2%)

Query: 45  PPSSPSPKTPPPPPPFVKSPPPPPPVVKSAPPPPPPVAKSPPPPPPVVKSPPPPIVKPPP 104
            PS  +   P  P     +   P       PP        PP  P      P        
Sbjct: 673 RPSRVARGDPVRPTAHHAALRAPQAPRPGGPPGGGGGLPPPPDLPAAAGPAPCGSSLIAS 732

Query: 105 PNGPSPKSPPPPSVRYPPPPKQQ 127
           P  P    P PP        + Q
Sbjct: 733 PTAPPE--PEPPGAEQADGAENQ 753

Length = 753

>gnl|CDD|223021 PHA03247, PHA03247, large tegument protein UL36; Provisional

 Score = 47.2 bits (112), Expect = 2e-06
 Identities = 23/95 (24%), Positives = 32/95 (33%)

Query: 29   NNPPPPPASKTPNCPPPPSSPSPKTPPPPPPFVKSPPPPPPVVKSAPPPPPPVAKSPPPP 88
              P  PP +  P  P PP++P+   P        +          +P  P     +   P
Sbjct: 2755 ARPARPPTTAGPPAPAPPAAPAAGPPRRLTRPAVASLSESRESLPSPWDPADPPAAVLAP 2814

Query: 89   PPVVKSPPPPIVKPPPPNGPSPKSPPPPSVRYPPP 123
               +     P    PPP    P +PPPP    PP 
Sbjct: 2815 AAALPPAASPAGPLPPPTSAQPTAPPPPPGPPPPS 2849

Length = 3151

>gnl|CDD|218191 pfam04652, DUF605, Vta1 like

 Score = 47.0 bits (112), Expect = 2e-06
 Identities = 20/70 (28%), Positives = 25/70 (35%)

Query: 28  SNNPPPPPASKTPNCPPPPSSPSPKTPPPPPPFVKSPPPPPPVVKSAPPPPPPVAKSPPP 87
            ++   PPA  +     PP SP   T P PPP   +PPPPP           P   S   
Sbjct: 207 PSDSSLPPAPSSFQSDTPPPSPESPTNPSPPPGPAAPPPPPVQQVPPLSTAKPTPPSASA 266

Query: 88  PPPVVKSPPP 97
            P  +     
Sbjct: 267 TPAPIGGITL 276

Vta1 (VPS20-associated protein 1) is a positive regulator of Vps4. Vps4 is an ATPase that is required in the multivesicular body (MVB) sorting pathway to dissociate the endosomal sorting complex required for transport (ESCRT). Vta1 promotes correct assembly of Vps4 and stimulates its ATPase activity through its conserved Vta1/SBP1/LIP5 region. Length = 315

>gnl|CDD|237862 PRK14948, PRK14948, DNA polymerase III subunits gamma and tau; Provisional

 Score = 47.7 bits (114), Expect = 2e-06
 Identities = 24/83 (28%), Positives = 28/83 (33%), Gaps = 3/83 (3%)

Query: 19  LLTSL---ACDCSNNPPPPPASKTPNCPPPPSSPSPKTPPPPPPFVKSPPPPPPVVKSAP 75
            L  L   A          PA+ TP   P P     +   P      + P PPP   S P
Sbjct: 355 TLLGLLPSAFISEIANASAPANPTPAPNPSPPPAPIQPSAPKTKQAATTPSPPPAKASPP 414

Query: 76  PPPPPVAKSPPPPPPVVKSPPPP 98
            P P     P P PP   +  PP
Sbjct: 415 IPVPAEPTEPSPTPPANAANAPP 437

Length = 620

>gnl|CDD|237862 PRK14948, PRK14948, DNA polymerase III subunits gamma and tau; Provisional

 Score = 47.7 bits (114), Expect = 2e-06
 Identities = 16/78 (20%), Positives = 21/78 (26%)

Query: 55  PPPPPFVKSPPPPPPVVKSAPPPPPPVAKSPPPPPPVVKSPPPPIVKPPPPNGPSPKSPP 114
                   +  P  P     P PPP   +   P      + P P      P  P P  P 
Sbjct: 363 AFISEIANASAPANPTPAPNPSPPPAPIQPSAPKTKQAATTPSPPPAKASPPIPVPAEPT 422

Query: 115 PPSVRYPPPPKQQTCPID 132
            PS   P         ++
Sbjct: 423 EPSPTPPANAANAPPSLN 440

Length = 620

>gnl|CDD|237862 PRK14948, PRK14948, DNA polymerase III subunits gamma and tau; Provisional

 Score = 47.3 bits (113), Expect = 2e-06
 Identities = 21/83 (25%), Positives = 27/83 (32%), Gaps = 4/83 (4%)

Query: 29  NNPPPPPASKTPNCPPPPSSPSPKTPPPPPPFVKSPPPPPPVVKSAPPPPPPVAKSPPPP 88
            +      +       P  +P+P  PP P      P  P     +  P PPP   SPP P
Sbjct: 361 PSAFISEIANASAPANPTPAPNPSPPPAPIQ----PSAPKTKQAATTPSPPPAKASPPIP 416

Query: 89  PPVVKSPPPPIVKPPPPNGPSPK 111
            P   + P P       N P   
Sbjct: 417 VPAEPTEPSPTPPANAANAPPSL 439

Length = 620

>gnl|CDD|237057 PRK12323, PRK12323, DNA polymerase III subunits gamma and tau; Provisional

 Score = 47.2 bits (112), Expect = 2e-06
 Identities = 17/98 (17%), Positives = 27/98 (27%)

Query: 29  NNPPPPPASKTPNCPPPPSSPSPKTPPPPPPFVKSPPPPPPVVKSAPPPPPPVAKSPPPP 88
              P   A+     P P ++      P P     +P   P    +A       A+  P P
Sbjct: 371 GAGPATAAAAPVAQPAPAAAAPAAAAPAPAAPPAAPAAAPAAAAAARAVAAAPARRSPAP 430

Query: 89  PPVVKSPPPPIVKPPPPNGPSPKSPPPPSVRYPPPPKQ 126
             +  +       P     P+P     P+    P    
Sbjct: 431 EALAAARQASARGPGGAPAPAPAPAAAPAAAARPAAAG 468

Length = 700

>gnl|CDD|237864 PRK14950, PRK14950, DNA polymerase III subunits gamma and tau; Provisional

 Score = 46.7 bits (111), Expect = 3e-06
 Identities = 17/64 (26%), Positives = 18/64 (28%), Gaps = 3/64 (4%)

Query: 30  NPPPPPASKTPNCPPPPSSPSPKTPPPPPPFVKSPPPPPPVVKSAPPPPPPVAKSPPPPP 89
              PP         PPP  P P  PP P         P     + P    P    P PP 
Sbjct: 395 ANIPPKEPVRETATPPPVPPRPVAPPVPHT---PESAPKLTRAAIPVDEKPKYTPPAPPK 451

Query: 90  PVVK 93
              K
Sbjct: 452 EEEK 455

Length = 585

>gnl|CDD|237057 PRK12323, PRK12323, DNA polymerase III subunits gamma and tau; Provisional

 Score = 46.8 bits (111), Expect = 3e-06
 Identities = 22/103 (21%), Positives = 30/103 (29%), Gaps = 2/103 (1%)

Query: 31  PPPPPASKTPNCPPPPSSPSPKTPPPPPPFVKSPPPPPPVVKSAPPPPPPVAKSPPPPPP 90
             P  A   P      ++P+   P   P      PPP   +      P P      P   
Sbjct: 462 ARPAAAGPRPVAAAAAAAPARAAPAAAPAPADDDPPPWEELPPEFASPAPAQPDAAPAGW 521

Query: 91  VVKSPPPPIVKPPPPNGPSPKSPPPPSVRYPPPPKQQTCPIDA 133
           V +S P P    P     +    P  +    P     T P+ A
Sbjct: 522 VAESIPDPATADPDDAFETLAPAPAAAP--APRAAAATEPVVA 562

Length = 700

>gnl|CDD|236090 PRK07764, PRK07764, DNA polymerase III subunits gamma and tau; Validated

 Score = 47.3 bits (113), Expect = 3e-06
 Identities = 23/97 (23%), Positives = 29/97 (29%)

Query: 34  PPASKTPNCPPPPSSPSPKTPPPPPPFVKSPPPPPPVVKSAPPPPPPVAKSPPPPPPVVK 93
             A           S +   P   P    + P        A  P P  A +P P PP   
Sbjct: 386 GVAGGAGAPAAAAPSAAAAAPAAAPAPAAAAPAAAAAPAPAAAPQPAPAPAPAPAPPSPA 445

Query: 94  SPPPPIVKPPPPNGPSPKSPPPPSVRYPPPPKQQTCP 130
              P    P PP   +P + P P+    P P     P
Sbjct: 446 GNAPAGGAPSPPPAAAPSAQPAPAPAAAPEPTAAPAP 482

Length = 824

>gnl|CDD|236090 PRK07764, PRK07764, DNA polymerase III subunits gamma and tau; Validated

 Score = 46.5 bits (111), Expect = 4e-06
 Identities = 27/104 (25%), Positives = 39/104 (37%), Gaps = 1/104 (0%)

Query: 31  PPPPPASKTPNCPPPPSSPSPKTPPPPPPFVKSPPPPPPVVKSAPPPPPPVAKSPPPP-P 89
            P  PA+     P  P+     TPP       +  PP     ++ P P      P PP P
Sbjct: 686 APAAPAAPAGAAPAQPAPAPAATPPAGQADDPAAQPPQAAQGASAPSPAADDPVPLPPEP 745

Query: 90  PVVKSPPPPIVKPPPPNGPSPKSPPPPSVRYPPPPKQQTCPIDA 133
                P     +PPPP  P+P + P  +    PP +++    D 
Sbjct: 746 DDPPDPAGAPAQPPPPPAPAPAAAPAAAPPPSPPSEEEEMAEDD 789

Length = 824

>gnl|CDD|235904 PRK06995, flhF, flagellar biosynthesis regulator FlhF; Validated

 Score = 46.5 bits (111), Expect = 4e-06
 Identities = 17/97 (17%), Positives = 26/97 (26%), Gaps = 7/97 (7%)

Query: 28  SNNPPPPPASKTPNCPPPPSSPSPKTPP--PPPPFVKSPPPP-----PPVVKSAPPPPPP 80
                 P A++ P    P +   P  P   P P  V+            V ++A P  P 
Sbjct: 53  PPAAAAPAAAQPPPAAAPAAVSRPAAPAAEPAPWLVEHAKRLTAQREQLVARAAAPAAPE 112

Query: 81  VAKSPPPPPPVVKSPPPPIVKPPPPNGPSPKSPPPPS 117
                 P            +       P P+ P   +
Sbjct: 113 AQAPAAPAERAAAENAARRLARAAAAAPRPRVPADAA 149

Length = 484

>gnl|CDD|223021 PHA03247, PHA03247, large tegument protein UL36; Provisional

 Score = 46.1 bits (109), Expect = 6e-06
 Identities = 29/107 (27%), Positives = 36/107 (33%), Gaps = 14/107 (13%)

Query: 31   PPPPPASKTPNCPPPPSSPSPKTPPPPPPFVKSPPPPP-----PVVKSAPPPPPPVAKSP 85
            P P P +     P PP   + +   P  P   +PP  P     P   + P  PP  A  P
Sbjct: 2708 PEPAPHALVSATPLPPGPAAARQASPALPAAPAPPAVPAGPATPGGPARPARPPTTAGPP 2767

Query: 86   PPPPPVVKSPPPPIVKPPPP---------NGPSPKSPPPPSVRYPPP 123
             P PP   +  PP     P          + PSP  P  P      P
Sbjct: 2768 APAPPAAPAAGPPRRLTRPAVASLSESRESLPSPWDPADPPAAVLAP 2814

Length = 3151

>gnl|CDD|237605 PRK14086, dnaA, chromosomal replication initiation protein; Provisional

 Score = 46.0 bits (109), Expect = 6e-06
 Identities = 23/111 (20%), Positives = 29/111 (26%), Gaps = 5/111 (4%)

Query: 28  SNNPPPPPASKTPNCPPPPSSPSPKTPPPPPPFVKSPPPPPPVVKSAPPPPPPVAKSPPP 87
           +  PP    +  P  P P   P      P         P    + +A P  P   + P P
Sbjct: 96  APPPPHARRTSEPELPRPGRRPYEGYGGPRADDRPPGLPRQDQLPTARPAYPAYQQRPEP 155

Query: 88  ---PPPVVKSPP--PPIVKPPPPNGPSPKSPPPPSVRYPPPPKQQTCPIDA 133
              P            +  PP     SP S  P   R   P        D 
Sbjct: 156 GAWPRAADDYGWQQQRLGFPPRAPYASPASYAPEQERDREPYDAGRPEYDQ 206

Length = 617

>gnl|CDD|235124 PRK03427, PRK03427, cell division protein ZipA; Provisional

 Score = 45.8 bits (109), Expect = 6e-06
 Identities = 23/102 (22%), Positives = 29/102 (28%), Gaps = 5/102 (4%)

Query: 31  PPPPPASKTPNCPPPPSSPSPKTPPPP---PPFVKSPPPPPPV--VKSAPPPPPPVAKSP 85
              PP +      P    P  + PP     P      P   P    +   P   PV+   
Sbjct: 91  QYQPPYASAQPRQPVQQPPEAQVPPQHAPRPAQPAPQPVQQPAYQPQPEQPLQQPVSPQV 150

Query: 86  PPPPPVVKSPPPPIVKPPPPNGPSPKSPPPPSVRYPPPPKQQ 127
            P P  V S P P  +   P  P     P P     P   + 
Sbjct: 151 APAPQPVHSAPQPAQQAFQPAEPVAAPQPEPVAEPAPVMDKP 192

Length = 333

>gnl|CDD|184918 PRK14954, PRK14954, DNA polymerase III subunits gamma and tau; Provisional

 Score = 45.7 bits (108), Expect = 8e-06
 Identities = 24/76 (31%), Positives = 29/76 (38%), Gaps = 3/76 (3%)

Query: 43  PPPPSSPSPKTPPPPPPFVKSPPPPPPVVKSAPPPPPPVAKSPPPPPPVVKSPPPPIVKP 102
           P P  SP  K   P P   +    P P    AP   P    SP   P   + PP   V  
Sbjct: 382 PSPAGSPDVKKKAPEPDLPQPDRHPGPAKPEAPGARPAELPSPASAPTPEQQPP---VAR 438

Query: 103 PPPNGPSPKSPPPPSV 118
             P  PSP++  P +V
Sbjct: 439 SAPLPPSPQASAPRNV 454

Length = 620

>gnl|CDD|184918 PRK14954, PRK14954, DNA polymerase III subunits gamma and tau; Provisional

 Score = 45.7 bits (108), Expect = 8e-06
 Identities = 30/106 (28%), Positives = 36/106 (33%), Gaps = 4/106 (3%)

Query: 3   KYQLASSFILLLNLGTLLTSLACDCSNNPPP--PPASKTPNCPPPPSSPSPKTPP--PPP 58
           K+Q    F   L L  L+  +  D    P P   P  K     P    P     P  P  
Sbjct: 354 KFQFEYQFRFELALLRLIELVRNDGGVAPSPAGSPDVKKKAPEPDLPQPDRHPGPAKPEA 413

Query: 59  PFVKSPPPPPPVVKSAPPPPPPVAKSPPPPPPVVKSPPPPIVKPPP 104
           P  +    P P     P   PPVA+S P PP    S P  +    P
Sbjct: 414 PGARPAELPSPASAPTPEQQPPVARSAPLPPSPQASAPRNVASGKP 459

Length = 620

>gnl|CDD|237030 PRK12270, kgd, alpha-ketoglutarate decarboxylase; Reviewed

 Score = 45.3 bits (108), Expect = 1e-05
 Identities = 19/92 (20%), Positives = 25/92 (27%), Gaps = 5/92 (5%)

Query: 59  PFVKSPPPPPPVVKSAPPPPPPVAKSPPPPPPVVKSPPPPIVKPPPPNGPSP-----KSP 113
            F     P      +A       A S P   P  K+P  P   PP    P+       + 
Sbjct: 31  EFFADYGPGSTAAPTAAAAAAAAAASAPAAAPAAKAPAAPAPAPPAAAAPAAPPKPAAAA 90

Query: 114 PPPSVRYPPPPKQQTCPIDALKLGACVDVLGG 145
              +    PP         A  +   V  L G
Sbjct: 91  AAAAAPAAPPAAAAAAAPAAAAVEDEVTPLRG 122

Length = 1228

>gnl|CDD|220392 pfam09770, PAT1, Topoisomerase II-associated protein PAT1

 Score = 45.1 bits (107), Expect = 1e-05
 Identities = 28/101 (27%), Positives = 33/101 (32%), Gaps = 9/101 (8%)

Query: 30  NPPPPPASKTPNCPPPPSSPSPKTPPPPPPFVKSPPPPPPVVKSAPPPPPPVAKSPPPPP 89
            P P  A   P  PP         P  PPP  +   P        PPPPP   +    PP
Sbjct: 220 LPAPSQAPAQPPLPPQL-------PQQPPPLQQPQFPGLSQQ--MPPPPPQPPQQQQQPP 270

Query: 90  PVVKSPPPPIVKPPPPNGPSPKSPPPPSVRYPPPPKQQTCP 130
                PPP     P P  P  ++ P P  + P        P
Sbjct: 271 QPQAQPPPQNQPTPHPGLPQGQNAPLPPPQQPQLLPLVQQP 311

Members of this family are necessary for accurate chromosome transmission during cell division. Length = 804

>gnl|CDD|217310 pfam02993, MCPVI, Minor capsid protein VI

 Score = 44.4 bits (105), Expect = 1e-05
 Identities = 24/98 (24%), Positives = 32/98 (32%), Gaps = 2/98 (2%)

Query: 29  NNPPPPPASKTPNCPPPPSSPSPKTPPPPPPFVKSPPPPPPVVKSAPPPPPPVAKS-PPP 87
               P P  +T   P     P P+ P      V + P PP   ++  P P PV +     
Sbjct: 111 GEEEPAPQEETVADPIQALQPRPR-PDVEEVLVPAAPEPPSYEETIKPGPAPVEEPVDSM 169

Query: 88  PPPVVKSPPPPIVKPPPPNGPSPKSPPPPSVRYPPPPK 125
              V     P  ++ PP   P P   P PS        
Sbjct: 170 AIAVPAIDTPVTLELPPAPQPPPPVVPQPSTMVVHRRS 207

This minor capsid protein may act as a link between the external capsid and the internal DNA-protein core. The C-terminal 11 residues may function as a protease cofactor leading to enzyme activation. Length = 238

>gnl|CDD|236940 PRK11633, PRK11633, cell division protein DedD; Provisional

 Score = 44.2 bits (105), Expect = 1e-05
 Identities = 25/95 (26%), Positives = 33/95 (34%), Gaps = 3/95 (3%)

Query: 33  PPPASKTPNCPPPPSSPSPKTPPPPPPFVKSPPPPPPVVKSAPPPPPPVAKSPPPPPPVV 92
           P      P  PP  ++ + +      P +      PP     P P P     PP P PV 
Sbjct: 57  PAATQALPTQPPEGAAEAVRAGDAAAPSLDPATVAPPNTPVEPEPAP---VEPPKPKPVE 113

Query: 93  KSPPPPIVKPPPPNGPSPKSPPPPSVRYPPPPKQQ 127
           K  P P  +      P+PK  P P V     P  +
Sbjct: 114 KPKPKPKPQQKVEAPPAPKPEPKPVVEEKAAPTGK 148

Length = 226

>gnl|CDD|223039 PHA03307, PHA03307, transcriptional regulator ICP4; Provisional

 Score = 45.2 bits (107), Expect = 1e-05
 Identities = 24/94 (25%), Positives = 31/94 (32%)

Query: 31  PPPPPASKTPNCPPPPSSPSPKTPPPPPPFVKSPPPPPPVVKSAPPPPPPVAKSPPPPPP 90
            PPPP     + PP P+    +   P       P   PP   ++P      A S      
Sbjct: 115 DPPPPTPPPASPPPSPAPDLSEMLRPVGSPGPPPAASPPAAGASPAAVASDAASSRQAAL 174

Query: 91  VVKSPPPPIVKPPPPNGPSPKSPPPPSVRYPPPP 124
            + SP      P  P    P S PP +    PP 
Sbjct: 175 PLSSPEETARAPSSPPAEPPPSTPPAAASPRPPR 208

Length = 1352

>gnl|CDD|235906 PRK07003, PRK07003, DNA polymerase III subunits gamma and tau; Validated

 Score = 44.8 bits (106), Expect = 1e-05
 Identities = 27/136 (19%), Positives = 40/136 (29%), Gaps = 25/136 (18%)

Query: 28  SNNPPPPPASKTPNCPPPPSSPSPKTPPPPPPF-----------------------VKSP 64
             +   P A+   + P   + P+P+  PP P                         V S 
Sbjct: 507 VPDARAPAAASREDAPAAAAPPAPEARPPTPAAAAPAARAGGAAAALDVLRNAGMRVSSD 566

Query: 65  PPPPPVVKSAPPPPPPVAKSPPPPPPVVKSPPP--PIVKPPPPNGPSPKSPPPPSVRYPP 122
                   + P   P  A  P  P   V+ P P         P   + ++      R  P
Sbjct: 567 RGARAAAAAKPAAAPAAAPKPAAPRVAVQVPTPRARAATGDAPPNGAARAEQAAESRGAP 626

Query: 123 PPKQQTCPIDALKLGA 138
           PP +   P D + L A
Sbjct: 627 PPWEDIPPDDYVPLSA 642

Length = 830

>gnl|CDD|223021 PHA03247, PHA03247, large tegument protein UL36; Provisional

 Score = 44.9 bits (106), Expect = 2e-05
 Identities = 33/118 (27%), Positives = 37/118 (31%), Gaps = 23/118 (19%)

Query: 31   PPPPPASKTPNCPPPPSSPSPKTPPP--PPPFVKSPPPPPPVVKSAP-PPPPPVAKSPPP 87
            P  PP S  P  P           PP   PP   +P PPPP    A   P P    + PP
Sbjct: 2589 PDAPPQSARPRAPVDDRGDPRGPAPPSPLPPDTHAPDPPPPSPSPAANEPDPHPPPTVPP 2648

Query: 88   PPPVVKSPPPPIVKPP--------------PPNGPSPKSPPPP------SVRYPPPPK 125
            P      P P  V  P              PP  P  ++  P           PPPP 
Sbjct: 2649 PERPRDDPAPGRVSRPRRARRLGRAAQASSPPQRPRRRAARPTVGSLTSLADPPPPPP 2706

Length = 3151

>gnl|CDD|237940 PRK15313, PRK15313, autotransport protein MisL; Provisional

 Score = 44.8 bits (105), Expect = 2e-05
 Identities = 26/81 (32%), Positives = 33/81 (40%), Gaps = 4/81 (4%)

Query: 43  PPPPSSPSPKTPPPPPPFVKSPPPPPPVVKSAPPPPPPVAKSPPPPPPVVKSPPPPIVKP 102
           P  P  P P  P  P P +  P  P PV    P  P PV   P  P PV   P  P++  
Sbjct: 560 PDEPIIPDPVDPVIPDPVIPDPVDPDPV---DPVIPDPVIPDPVDPDPVDPEPVDPVIPD 616

Query: 103 PP-PNGPSPKSPPPPSVRYPP 122
           P  P+     +PP    ++ P
Sbjct: 617 PTIPDIGQSDTPPITEHQFRP 637

Length = 955

>gnl|CDD|234938 PRK01297, PRK01297, ATP-dependent RNA helicase RhlB; Provisional

 Score = 44.1 bits (104), Expect = 2e-05
 Identities = 19/62 (30%), Positives = 24/62 (38%), Gaps = 2/62 (3%)

Query: 38 KTPNCPPPPSSPSPKTPPPPPPFVKSPPPPPPVVKSAPPPPPPVAKSPPPPPPVVKSPPP 97
          K     P P+ PSP   P PPP   +    P    +AP    P A+ P    P  +  P 
Sbjct: 11 KGEAEQPAPAPPSPAAAPAPPP--PAKTAAPATKAAAPAAAAPRAEKPKKDKPRRERKPK 68

Query: 98 PI 99
          P 
Sbjct: 69 PA 70

Length = 475

>gnl|CDD|237862 PRK14948, PRK14948, DNA polymerase III subunits gamma and tau; Provisional

 Score = 44.2 bits (105), Expect = 3e-05
 Identities = 21/68 (30%), Positives = 27/68 (39%)

Query: 61  VKSPPPPPPVVKSAPPPPPPVAKSPPPPPPVVKSPPPPIVKPPPPNGPSPKSPPPPSVRY 120
             +   PPP  KS PPP P      P       +PPPP       +  +P   P  S   
Sbjct: 518 SNTAKTPPPPQKSPPPPAPTPPLPQPTATAPPPTPPPPPPTATQASSNAPAQIPADSSPP 577

Query: 121 PPPPKQQT 128
           PP P++ T
Sbjct: 578 PPIPEEPT 585

Length = 620

>gnl|CDD|237862 PRK14948, PRK14948, DNA polymerase III subunits gamma and tau; Provisional

 Score = 43.8 bits (104), Expect = 3e-05
 Identities = 18/74 (24%), Positives = 28/74 (37%)

Query: 44  PPPSSPSPKTPPPPPPFVKSPPPPPPVVKSAPPPPPPVAKSPPPPPPVVKSPPPPIVKPP 103
              S  +  + P  P    +P PPP  ++ + P     A +P PPP     P P   +P 
Sbjct: 363 AFISEIANASAPANPTPAPNPSPPPAPIQPSAPKTKQAATTPSPPPAKASPPIPVPAEPT 422

Query: 104 PPNGPSPKSPPPPS 117
            P+   P +     
Sbjct: 423 EPSPTPPANAANAP 436

Length = 620

>gnl|CDD|236090 PRK07764, PRK07764, DNA polymerase III subunits gamma and tau; Validated

 Score = 43.8 bits (104), Expect = 3e-05
 Identities = 25/98 (25%), Positives = 29/98 (29%), Gaps = 3/98 (3%)

Query: 30  NPPPPPASKTPNCPPPPSSPSPKTPPPPPPFVKSPPPPPPVVKSAP---PPPPPVAKSPP 86
                  +  P  P P +  +P    P  P       PP      P   PP      S P
Sbjct: 672 KAGGAAPAAPPPAPAPAAPAAPAGAAPAQPAPAPAATPPAGQADDPAAQPPQAAQGASAP 731

Query: 87  PPPPVVKSPPPPIVKPPPPNGPSPKSPPPPSVRYPPPP 124
            P      P PP    PP    +P  PPPP    P   
Sbjct: 732 SPAADDPVPLPPEPDDPPDPAGAPAQPPPPPAPAPAAA 769

Length = 824

>gnl|CDD|236090 PRK07764, PRK07764, DNA polymerase III subunits gamma and tau; Validated

 Score = 43.8 bits (104), Expect = 3e-05
 Identities = 19/97 (19%), Positives = 23/97 (23%)

Query: 31  PPPPPASKTPNCPPPPSSPSPKTPPPPPPFVKSPPPPPPVVKSAPPPPPPVAKSPPPPPP 90
           P  P  +     P   S+        P    K    P         P      +P  PPP
Sbjct: 624 PAAPAPAGAAAAPAEASAAPAPGVAAPEHHPKHVAVPDASDGGDGWPAKAGGAAPAAPPP 683

Query: 91  VVKSPPPPIVKPPPPNGPSPKSPPPPSVRYPPPPKQQ 127
                 P       P  P+P     P       P  Q
Sbjct: 684 APAPAAPAAPAGAAPAQPAPAPAATPPAGQADDPAAQ 720

Length = 824

>gnl|CDD|236090 PRK07764, PRK07764, DNA polymerase III subunits gamma and tau; Validated

 Score = 43.8 bits (104), Expect = 3e-05
 Identities = 19/100 (19%), Positives = 27/100 (27%)

Query: 31  PPPPPASKTPNCPPPPSSPSPKTPPPPPPFVKSPPPPPPVVKSAPPPPPPVAKSPPPPPP 90
           P  P A   P      ++P+  +  P P        P  V             +      
Sbjct: 618 PAAPAAPAAPAPAGAAAAPAEASAAPAPGVAAPEHHPKHVAVPDASDGGDGWPAKAGGAA 677

Query: 91  VVKSPPPPIVKPPPPNGPSPKSPPPPSVRYPPPPKQQTCP 130
               PP P    P     +  + P P+    PP  Q   P
Sbjct: 678 PAAPPPAPAPAAPAAPAGAAPAQPAPAPAATPPAGQADDP 717

Length = 824

>gnl|CDD|237871 PRK14965, PRK14965, DNA polymerase III subunits gamma and tau; Provisional

 Score = 44.0 bits (104), Expect = 3e-05
 Identities = 19/70 (27%), Positives = 22/70 (31%), Gaps = 4/70 (5%)

Query: 36  ASKTPNCPPPPSSPSPKTPPPPPPFVKSPPPPPPVVKSAPPPPPPVAKSPPPPPPVVKSP 95
               P  P           P  PP   +PP PP     AP  P     +P P PP   +P
Sbjct: 378 ERGAPAPPSAAWGAPTPAAPAAPPPAAAPPVPPA----APARPAAARPAPAPAPPAAAAP 433

Query: 96  PPPIVKPPPP 105
           P     P   
Sbjct: 434 PARSADPAAA 443

Length = 576

>gnl|CDD|240289 PTZ00144, PTZ00144, dihydrolipoamide succinyltransferase; Provisional

 Score = 43.5 bits (103), Expect = 3e-05
 Identities = 20/67 (29%), Positives = 27/67 (40%), Gaps = 3/67 (4%)

Query: 31  PPPPPASKTPNCPPPPSSPSPKTPPPPPPFVKSPPPPPPVVKSAPPPPPPVAKSPPPPPP 90
           P   PA+         +   PK   P P    +  P PP   +A  PP P   + PPP P
Sbjct: 125 PAAAPAAAAAAKAEKTTPEKPKAAAPTPEPPAASKPTPP---AAAKPPEPAPAAKPPPTP 181

Query: 91  VVKSPPP 97
           V ++ P 
Sbjct: 182 VARADPR 188

Length = 418

>gnl|CDD|234938 PRK01297, PRK01297, ATP-dependent RNA helicase RhlB; Provisional

 Score = 43.7 bits (103), Expect = 3e-05
 Identities = 22/77 (28%), Positives = 25/77 (32%), Gaps = 10/77 (12%)

Query: 60  FVKSPPPPPPVVKSAPPPPPPVAKSPPPPPPVVKSPPPPIVKPPPPNGPSPKSPPPPSVR 119
           F K     P       P PP  A +P PPPP   + P      P    P  + P     R
Sbjct: 9   FGKGEAEQPA------PAPPSPAAAPAPPPPAKTAAPATKAAAPAAAAPRAEKPKKDKPR 62

Query: 120 YPPPPKQQTCPIDALKL 136
               PK    P    KL
Sbjct: 63  RERKPK----PASLWKL 75

Length = 475

>gnl|CDD|223021 PHA03247, PHA03247, large tegument protein UL36; Provisional

 Score = 43.8 bits (103), Expect = 4e-05
 Identities = 25/96 (26%), Positives = 31/96 (32%)

Query: 31   PPPPPASKTPNCPPPPSSPSPKTPPPPPPFVKSPPPPPPVVKSAPPPPPPVAKSPPPPPP 90
            P   P  +         S S ++ P P      P        + PP   P    PPP   
Sbjct: 2775 PAAGPPRRLTRPAVASLSESRESLPSPWDPADPPAAVLAPAAALPPAASPAGPLPPPTSA 2834

Query: 91   VVKSPPPPIVKPPPPNGPSPKSPPPPSVRYPPPPKQ 126
               +PPPP   PPP         P   VR  PP + 
Sbjct: 2835 QPTAPPPPPGPPPPSLPLGGSVAPGGDVRRRPPSRS 2870

Length = 3151

>gnl|CDD|236090 PRK07764, PRK07764, DNA polymerase III subunits gamma and tau; Validated

 Score = 43.4 bits (103), Expect = 4e-05
 Identities = 21/96 (21%), Positives = 27/96 (28%)

Query: 31  PPPPPASKTPNCPPPPSSPSPKTPPPPPPFVKSPPPPPPVVKSAPPPPPPVAKSPPPPPP 90
            PP PAS  P       +       P  P        P    +AP P     +  P    
Sbjct: 599 GPPAPASSGPPEEAARPAAPAAPAAPAAPAPAGAAAAPAEASAAPAPGVAAPEHHPKHVA 658

Query: 91  VVKSPPPPIVKPPPPNGPSPKSPPPPSVRYPPPPKQ 126
           V  +       P    G +P +PPP      P    
Sbjct: 659 VPDASDGGDGWPAKAGGAAPAAPPPAPAPAAPAAPA 694

Length = 824

>gnl|CDD|218621 pfam05518, Totivirus_coat, Totivirus coat protein

 Score = 43.6 bits (103), Expect = 4e-05
 Identities = 17/72 (23%), Positives = 22/72 (30%), Gaps = 3/72 (4%)

Query: 34  PPASKTPNCPPPPSSPSPKTPPPPPPFVKSPPPPPPVVKSAPPPPPPVAKSPPPPPPVVK 93
            P   T +     +  +P+   PP      PPPP      A   P P   S    P    
Sbjct: 681 DPVRPTAHHAALRAPQAPRPGGPPGGGGGLPPPPDLP---AAAGPAPCGSSLIASPTAPP 737

Query: 94  SPPPPIVKPPPP 105
            P PP  +    
Sbjct: 738 EPEPPGAEQADG 749

Length = 753

>gnl|CDD|237862 PRK14948, PRK14948, DNA polymerase III subunits gamma and tau; Provisional

 Score = 43.0 bits (102), Expect = 5e-05
 Identities = 26/72 (36%), Positives = 29/72 (40%)

Query: 28  SNNPPPPPASKTPNCPPPPSSPSPKTPPPPPPFVKSPPPPPPVVKSAPPPPPPVAKSPPP 87
                PPP + TP  P P ++  P TPPPPPP         P    A   PPP     P 
Sbjct: 526 PPQKSPPPPAPTPPLPQPTATAPPPTPPPPPPTATQASSNAPAQIPADSSPPPPIPEEPT 585

Query: 88  PPPVVKSPPPPI 99
           P P   S P  I
Sbjct: 586 PSPTKDSSPEEI 597

Length = 620

>gnl|CDD|237862 PRK14948, PRK14948, DNA polymerase III subunits gamma and tau; Provisional

 Score = 43.0 bits (102), Expect = 5e-05
 Identities = 14/72 (19%), Positives = 16/72 (22%)

Query: 57  PPPFVKSPPPPPPVVKSAPPPPPPVAKSPPPPPPVVKSPPPPIVKPPPPNGPSPKSPPPP 116
           P  F+             P P P    +P  P             PPP     P   P  
Sbjct: 361 PSAFISEIANASAPANPTPAPNPSPPPAPIQPSAPKTKQAATTPSPPPAKASPPIPVPAE 420

Query: 117 SVRYPPPPKQQT 128
                P P    
Sbjct: 421 PTEPSPTPPANA 432

Length = 620

>gnl|CDD|236138 PRK07994, PRK07994, DNA polymerase III subunits gamma and tau; Validated

 Score = 42.9 bits (102), Expect = 5e-05
 Identities = 13/104 (12%), Positives = 22/104 (21%), Gaps = 7/104 (6%)

Query: 28  SNNPPPPPASKTPNCPPPPSSPSPKTPPPPPPFVKSPP----PPPPVVKSAPPPPPPVAK 83
           +  P    A       PPP + +P+  P  P    +                        
Sbjct: 384 TAAPTAAVAPPQAPAVPPPPASAPQQAPAVPLPETTSQLLAARQQLQRAQGATKAKKSEP 443

Query: 84  SPPPPPPVVKSPPPPIVKPPP---PNGPSPKSPPPPSVRYPPPP 124
           +       V S    +    P       +P        +   P 
Sbjct: 444 AAASRARPVNSALERLASVRPAPSALEKAPAKKEAYRWKATNPV 487

Length = 647

>gnl|CDD|236940 PRK11633, PRK11633, cell division protein DedD; Provisional

 Score = 42.7 bits (101), Expect = 5e-05
 Identities = 18/68 (26%), Positives = 22/68 (32%)

Query: 30  NPPPPPASKTPNCPPPPSSPSPKTPPPPPPFVKSPPPPPPVVKSAPPPPPPVAKSPPPPP 89
                P+       PP +   P+  P  PP  K    P P  K       P A  P P P
Sbjct: 78  GDAAAPSLDPATVAPPNTPVEPEPAPVEPPKPKPVEKPKPKPKPQQKVEAPPAPKPEPKP 137

Query: 90  PVVKSPPP 97
            V +   P
Sbjct: 138 VVEEKAAP 145

Length = 226

>gnl|CDD|236382 PRK09111, PRK09111, DNA polymerase III subunits gamma and tau; Validated

 Score = 43.0 bits (102), Expect = 5e-05
 Identities = 15/75 (20%), Positives = 17/75 (22%), Gaps = 2/75 (2%)

Query: 45  PPSSPSPKTPPPPPPFVKSPPPPPPVVKSAPPPPPPVAKSPPPPPPVVKSPPPPIVKPPP 104
           PPS       PP      +P  P            P A  P      V         PP 
Sbjct: 391 PPSPGGGGGGPPGGG--GAPGAPAAAAAPGAAAAAPAAGGPAAALAAVPDAAAAAAAPPA 448

Query: 105 PNGPSPKSPPPPSVR 119
           P      +    S  
Sbjct: 449 PAAAPQPAVRLNSFE 463

Length = 598

>gnl|CDD|220392 pfam09770, PAT1, Topoisomerase II-associated protein PAT1

 Score = 43.2 bits (102), Expect = 6e-05
 Identities = 24/121 (19%), Positives = 31/121 (25%), Gaps = 19/121 (15%)

Query: 26  DCSNNPPPPPASKTPNCPPPPSS-----------------PSPKTPPPPPPFVKSP--PP 66
             +  P P P     + P P +                        P PP  V     PP
Sbjct: 127 GTAPKPEPQPPQAPESQPQPQTPAQKMLSLEEVEAQLQQRQQAPQLPQPPQQVLPQGMPP 186

Query: 67  PPPVVKSAPPPPPPVAKSPPPPPPVVKSPPPPIVKPPPPNGPSPKSPPPPSVRYPPPPKQ 126
                    PP  P     PP     +  P   +  P      P  PP    + PP  + 
Sbjct: 187 RQAAFPQQGPPEQPPGYPQPPQGHPEQVQPQQFLPAPSQAPAQPPLPPQLPQQPPPLQQP 246

Query: 127 Q 127
           Q
Sbjct: 247 Q 247

Members of this family are necessary for accurate chromosome transmission during cell division. Length = 804

>gnl|CDD|220392 pfam09770, PAT1, Topoisomerase II-associated protein PAT1

 Score = 43.2 bits (102), Expect = 6e-05
 Identities = 24/100 (24%), Positives = 29/100 (29%), Gaps = 4/100 (4%)

Query: 28  SNNPPPPPASKTPNCPPPPSSPSPKTPPPPPPFVKSPPPPPPVVKSAPPPPPPVAKSPPP 87
               PP    + P    P      +  PPPPP        PP  ++ PPP       P  
Sbjct: 229 QPPLPPQLPQQPPPLQQPQFPGLSQQMPPPPPQPPQQQQQPPQPQAQPPPQNQPTPHPGL 288

Query: 88  PPPVVKSPPPPIVKPPPPNGPSPKSPPPPSVRYPPPPKQQ 127
           P       PPP      P        P    R P   +Q 
Sbjct: 289 PQGQNAPLPPPQQPQLLPLV----QQPQGQQRGPQFREQL 324

Members of this family are necessary for accurate chromosome transmission during cell division. Length = 804

>gnl|CDD|240289 PTZ00144, PTZ00144, dihydrolipoamide succinyltransferase; Provisional

 Score = 42.7 bits (101), Expect = 6e-05
 Identities = 21/76 (27%), Positives = 25/76 (32%), Gaps = 3/76 (3%)

Query: 52  KTPPPPPPFVKSPPPPPPVVKSAPPPPPPVAKSPPPPPPVVKSPPPPIVKPPPPNGPSPK 111
               PP     +             P  P A +P P PP    P PP    PP   P+ K
Sbjct: 120 TGGAPPAAAPAAAAAAKA---EKTTPEKPKAAAPTPEPPAASKPTPPAAAKPPEPAPAAK 176

Query: 112 SPPPPSVRYPPPPKQQ 127
            PP P  R  P   + 
Sbjct: 177 PPPTPVARADPRETRV 192

Length = 418

>gnl|CDD|240289 PTZ00144, PTZ00144, dihydrolipoamide succinyltransferase; Provisional

 Score = 42.7 bits (101), Expect = 6e-05
 Identities = 24/82 (29%), Positives = 28/82 (34%), Gaps = 9/82 (10%)

Query: 32  PPPPASKTPNCPPPPSSPSPKTPPPPPPFVKSPPPPPPVVKSAPPPPPPVAKSPPPPPPV 91
           PP  A           +   K     P       P PP   +A  P PP A  PP P P 
Sbjct: 124 PPAAAPAAAAAAKAEKTTPEKPKAAAPT------PEPP---AASKPTPPAAAKPPEPAPA 174

Query: 92  VKSPPPPIVKPPPPNGPSPKSP 113
            K PP P+ +  P     P S 
Sbjct: 175 AKPPPTPVARADPRETRVPMSR 196

Length = 418

>gnl|CDD|223039 PHA03307, PHA03307, transcriptional regulator ICP4; Provisional

 Score = 43.2 bits (102), Expect = 6e-05
 Identities = 22/112 (19%), Positives = 29/112 (25%)

Query: 22  SLACDCSNNPPPPPASKTPNCPPPPSSPSPKTPPPPPPFVKSPPPPPPVVKSAPPPPPPV 81
           S      +   P   ++  +  PP  S     PP PPP    P P P + +   P   P 
Sbjct: 86  STPTWSLSTLAPASPAREGSPTPPGPSSPDPPPPTPPPASPPPSPAPDLSEMLRPVGSPG 145

Query: 82  AKSPPPPPPVVKSPPPPIVKPPPPNGPSPKSPPPPSVRYPPPPKQQTCPIDA 133
                 PP    SP             +     P      P       P   
Sbjct: 146 PPPAASPPAAGASPAAVASDAASSRQAALPLSSPEETARAPSSPPAEPPPST 197

Length = 1352

>gnl|CDD|223021 PHA03247, PHA03247, large tegument protein UL36; Provisional

 Score = 43.0 bits (101), Expect = 7e-05
 Identities = 26/97 (26%), Positives = 30/97 (30%), Gaps = 3/97 (3%)

Query: 31  PPPPPASKTPNCPPPPSSPSPKTPPPPPPFVKSPPPPPPVVKSAPPPPPPVAKSPP---P 87
           PP      +     P  +  P           +P    P       P  PV  S P   P
Sbjct: 361 PPSSLEDLSAGRHHPKRASLPTRKRRSARHAATPFARGPGGDDQTRPAAPVPASVPTPAP 420

Query: 88  PPPVVKSPPPPIVKPPPPNGPSPKSPPPPSVRYPPPP 124
            P    +PPPP    P     S   P PP  R PP P
Sbjct: 421 TPVPASAPPPPATPLPSAEPGSDDGPAPPPERQPPAP 457

Length = 3151

>gnl|CDD|237862 PRK14948, PRK14948, DNA polymerase III subunits gamma and tau; Provisional

 Score = 42.6 bits (101), Expect = 7e-05
 Identities = 17/63 (26%), Positives = 19/63 (30%)

Query: 63  SPPPPPPVVKSAPPPPPPVAKSPPPPPPVVKSPPPPIVKPPPPNGPSPKSPPPPSVRYPP 122
           +             PPPP    P P P     PP P   PP     S  +P        P
Sbjct: 517 ASNTAKTPPPPQKSPPPPAPTPPLPQPTATAPPPTPPPPPPTATQASSNAPAQIPADSSP 576

Query: 123 PPK 125
           PP 
Sbjct: 577 PPP 579

Length = 620

>gnl|CDD|236090 PRK07764, PRK07764, DNA polymerase III subunits gamma and tau; Validated

 Score = 42.7 bits (101), Expect = 8e-05
 Identities = 19/92 (20%), Positives = 21/92 (22%)

Query: 31  PPPPPASKTPNCPPPPSSPSPKTPPPPPPFVKSPPPPPPVVKSAPPPPPPVAKSPPPPPP 90
             P  AS  P          PK    P         P     +AP  PPP      P  P
Sbjct: 634 AAPAEASAAPAPGVAAPEHHPKHVAVPDASDGGDGWPAKAGGAAPAAPPPAPAPAAPAAP 693

Query: 91  VVKSPPPPIVKPPPPNGPSPKSPPPPSVRYPP 122
              +P  P   P           P        
Sbjct: 694 AGAAPAQPAPAPAATPPAGQADDPAAQPPQAA 725

Length = 824

>gnl|CDD|236382 PRK09111, PRK09111, DNA polymerase III subunits gamma and tau; Validated

 Score = 42.6 bits (101), Expect = 8e-05
 Identities = 12/69 (17%), Positives = 18/69 (26%), Gaps = 2/69 (2%)

Query: 31  PPPPPASKTPNCPPPPSSPSPKTPPPPPPFVKSPPPPPPVVKSAPPPPPPVAKSPPPPPP 90
            P       P     P +P+    P       +   P   + + P      A   PP P 
Sbjct: 393 SPGGGGGGPPGGGGAPGAPAAAAAPGAAAAAPAAGGPAAALAAVPDAAAAAA--APPAPA 450

Query: 91  VVKSPPPPI 99
               P   +
Sbjct: 451 AAPQPAVRL 459

Length = 598

>gnl|CDD|237057 PRK12323, PRK12323, DNA polymerase III subunits gamma and tau; Provisional

 Score = 42.6 bits (100), Expect = 9e-05
 Identities = 21/99 (21%), Positives = 33/99 (33%), Gaps = 2/99 (2%)

Query: 31  PPPPPASKTPNCPPPPSSPSPKTPPPPPPFVKSPP--PPPPVVKSAPPPPPPVAKSPPPP 88
            P   A+        P++        PPP+ + PP    P   +    P   VA+S P P
Sbjct: 470 RPVAAAAAAAPARAAPAAAPAPADDDPPPWEELPPEFASPAPAQPDAAPAGWVAESIPDP 529

Query: 89  PPVVKSPPPPIVKPPPPNGPSPKSPPPPSVRYPPPPKQQ 127
                      + P P   P+P++         P P + 
Sbjct: 530 ATADPDDAFETLAPAPAAAPAPRAAAATEPVVAPRPPRA 568

Length = 700

>gnl|CDD|237605 PRK14086, dnaA, chromosomal replication initiation protein; Provisional

 Score = 42.5 bits (100), Expect = 9e-05
 Identities = 22/112 (19%), Positives = 33/112 (29%), Gaps = 16/112 (14%)

Query: 31  PPPPPASKTPNCPPPPSSPSPKTPPPPPPFVKSPPPPPPVVKSAPPPPPPVAKSPPPPPP 90
           P PPP            +  P+ P P     +    P    +    P      +  P  P
Sbjct: 95  PAPPPP-------HARRTSEPELPRPGRRPYEGYGGPRADDRPPGLPRQDQLPTARPAYP 147

Query: 91  VVKSPPPPIVKPPPPN---------GPSPKSPPPPSVRYPPPPKQQTCPIDA 133
             +  P P   P   +         G  P++P      Y P  ++   P DA
Sbjct: 148 AYQQRPEPGAWPRAADDYGWQQQRLGFPPRAPYASPASYAPEQERDREPYDA 199

Length = 617

>gnl|CDD|223021 PHA03247, PHA03247, large tegument protein UL36; Provisional

 Score = 41.8 bits (98), Expect = 1e-04
 Identities = 25/96 (26%), Positives = 34/96 (35%), Gaps = 5/96 (5%)

Query: 29   NNPPPPPASKTPNCPPPPSSPSPKTPPPPPPFVKSPPPPPPVVKSAPPPPPPVAKSPPPP 88
            ++P P   S+         +    +PP  P    + P    +   A PPPPP    P P 
Sbjct: 2654 DDPAPGRVSRPRRARRLGRAAQASSPPQRPRRRAARPTVGSLTSLADPPPPPPTPEPAPH 2713

Query: 89   PPVVKSPPPPIVKPPPPNGPSPKSPPPPSVRYPPPP 124
              V  +P PP      P      SP  P+   PP  
Sbjct: 2714 ALVSATPLPPG-----PAAARQASPALPAAPAPPAV 2744

Length = 3151

>gnl|CDD|237862 PRK14948, PRK14948, DNA polymerase III subunits gamma and tau; Provisional

 Score = 42.3 bits (100), Expect = 1e-04
 Identities = 21/66 (31%), Positives = 24/66 (36%), Gaps = 2/66 (3%)

Query: 63  SPPPPPPVVKSAPPPPPPVAKSPPPPPPVVKSPPPPIVKPPPPNGP--SPKSPPPPSVRY 120
           S              PPP A +PP P P   +PPP    PPP      S      P+   
Sbjct: 516 SASNTAKTPPPPQKSPPPPAPTPPLPQPTATAPPPTPPPPPPTATQASSNAPAQIPADSS 575

Query: 121 PPPPKQ 126
           PPPP  
Sbjct: 576 PPPPIP 581

Length = 620

>gnl|CDD|237057 PRK12323, PRK12323, DNA polymerase III subunits gamma and tau; Provisional

 Score = 41.8 bits (98), Expect = 1e-04
 Identities = 23/98 (23%), Positives = 30/98 (30%), Gaps = 8/98 (8%)

Query: 35  PASKTPNCPPPPSSPSPKTPPPPPPFVKSPPPPPPVVKSAPPPPPPVAKSPP---PPPPV 91
            A      P P  +P+        P    P P      +AP    P A   P    PPP 
Sbjct: 440 SARGPGGAPAPAPAPAAAPAAAARPAAAGPRPVAAAAAAAPARAAPAAAPAPADDDPPPW 499

Query: 92  VKSPPPPIVKPPPPNGPSP-----KSPPPPSVRYPPPP 124
            + PP      P     +P     +S P P+   P   
Sbjct: 500 EELPPEFASPAPAQPDAAPAGWVAESIPDPATADPDDA 537

Length = 700

>gnl|CDD|236090 PRK07764, PRK07764, DNA polymerase III subunits gamma and tau; Validated

 Score = 41.9 bits (99), Expect = 1e-04
 Identities = 19/94 (20%), Positives = 28/94 (29%), Gaps = 1/94 (1%)

Query: 31  PPPPPASKTPNCPPPPSSPSPKTPPPPPPFVKSPPPPPPVVKSAPPPPPPVAKSPPPPPP 90
            P  PA+     P   ++   +    P P V +P   P  V                   
Sbjct: 617 APAAPAAPAAPAPAGAAAAPAEASAAPAPGVAAPEHHPKHVAVPDASDGGDGWPAKAGGA 676

Query: 91  VVKSPPPPIVKPPPPNGPSPKSPPPPSVRYPPPP 124
              +PPP    P  P  P+  +P  P+      P
Sbjct: 677 APAAPPPA-PAPAAPAAPAGAAPAQPAPAPAATP 709

Length = 824

>gnl|CDD|236090 PRK07764, PRK07764, DNA polymerase III subunits gamma and tau; Validated

 Score = 41.9 bits (99), Expect = 1e-04
 Identities = 20/104 (19%), Positives = 23/104 (22%), Gaps = 3/104 (2%)

Query: 31  PPPPPASKTPNCPPPPSSPSPKTPPPPPPFVKSPPPPPPVVKSAPPPPPPVAKSPPPPPP 90
           P  P A         P+  S    P          P    V  A               P
Sbjct: 621 PAAPAAPAPAGAAAAPAEASAAPAPGVAA--PEHHPKHVAVPDASDGGDGWPAKAGGAAP 678

Query: 91  VVKSPPPPIVKPPPPNGPSPKSP-PPPSVRYPPPPKQQTCPIDA 133
               P P    P  P G +P  P P P+   P            
Sbjct: 679 AAPPPAPAPAAPAAPAGAAPAQPAPAPAATPPAGQADDPAAQPP 722

Length = 824

>gnl|CDD|237871 PRK14965, PRK14965, DNA polymerase III subunits gamma and tau; Provisional

 Score = 42.0 bits (99), Expect = 1e-04
 Identities = 21/73 (28%), Positives = 25/73 (34%), Gaps = 10/73 (13%)

Query: 53  TPPPPPPFVKSPPPPPPVVKSAPPPPPPVAKSPPPPPPVVKSPPPPIVKP-PPPNGPSPK 111
            P PP     +P P  P        PPP A  P PP        P   +P P P  P+  
Sbjct: 381 APAPPSAAWGAPTPAAPA------APPPAAAPPVPPA---APARPAAARPAPAPAPPAAA 431

Query: 112 SPPPPSVRYPPPP 124
           +PP  S       
Sbjct: 432 APPARSADPAAAA 444

Length = 576

>gnl|CDD|222095 pfam13388, DUF4106, Protein of unknown function (DUF4106)

 Score = 42.0 bits (98), Expect = 1e-04
 Identities = 21/84 (25%), Positives = 27/84 (32%), Gaps = 9/84 (10%)

Query: 31  PPPPPASKTPNCPPPPSSP-------SPKTPPPPPPFVKSPPPPPPVVKSAPPPPPPVAK 83
           P PP  +  P  P   +S        +PK  P   P V++P   P V   A  P     +
Sbjct: 174 PNPPREAPAPGLPKTFTSSHGHRHRHAPK--PTQQPTVQNPAQQPTVQNPAQQPQQQPQQ 231

Query: 84  SPPPPPPVVKSPPPPIVKPPPPNG 107
            P  P        P    P    G
Sbjct: 232 QPVQPAQQPTPQNPAQQPPQTEQG 255

This family of proteins are found in large numbers in the Trichomonas vaginalis proteome. The function of this protein is unknown. Length = 422

>gnl|CDD|223021 PHA03247, PHA03247, large tegument protein UL36; Provisional

 Score = 41.5 bits (97), Expect = 2e-04
 Identities = 38/130 (29%), Positives = 44/130 (33%), Gaps = 37/130 (28%)

Query: 32   PPPPASKTPNCPPPPSSPSPKTPPPPPPFVKSPP-------------------PPPPVVK 72
            P       P+ PP PS  +P   P  P      P                   PPPP+  
Sbjct: 2498 PGGGGPPDPDAPPAPSRLAPAILPDEPVGEPVHPRMLTWIRGLEELASDDAGDPPPPLPP 2557

Query: 73   SAPP-------PPPPVAKSPPPP-----------PPVVKSPPPPIVKPPPPNGPSPKSPP 114
            +APP       PPP  A  P  P           PP    P  P+     P GP+P SP 
Sbjct: 2558 AAPPAAPDRSVPPPRPAPRPSEPAVTSRARRPDAPPQSARPRAPVDDRGDPRGPAPPSPL 2617

Query: 115  PPSVRYPPPP 124
            PP    P PP
Sbjct: 2618 PPDTHAPDPP 2627

Length = 3151

>gnl|CDD|237057 PRK12323, PRK12323, DNA polymerase III subunits gamma and tau; Provisional

 Score = 41.4 bits (97), Expect = 2e-04
 Identities = 19/101 (18%), Positives = 23/101 (22%)

Query: 31  PPPPPASKTPNCPPPPSSPSPKTPPPPPPFVKSPPPPPPVVKSAPPPPPPVAKSPPPPPP 90
             P P +           P     P P P         P      P     A +P    P
Sbjct: 426 RSPAPEALAAARQASARGPGGAPAPAPAPAAAPAAAARPAAAGPRPVAAAAAAAPARAAP 485

Query: 91  VVKSPPPPIVKPPPPNGPSPKSPPPPSVRYPPPPKQQTCPI 131
                P     PP    P   + P P+     P       I
Sbjct: 486 AAAPAPADDDPPPWEELPPEFASPAPAQPDAAPAGWVAESI 526

Length = 700

>gnl|CDD|236090 PRK07764, PRK07764, DNA polymerase III subunits gamma and tau; Validated

 Score = 41.5 bits (98), Expect = 2e-04
 Identities = 20/97 (20%), Positives = 24/97 (24%)

Query: 31  PPPPPASKTPNCPPPPSSPSPKTPPPPPPFVKSPPPPPPVVKSAPPPPPPVAKSPPPPPP 90
           P P  A+  P       +P    P   P  V  P                   +PPP P 
Sbjct: 627 PAPAGAAAAPAEASAAPAPGVAAPEHHPKHVAVPDASDGGDGWPAKAGGAAPAAPPPAPA 686

Query: 91  VVKSPPPPIVKPPPPNGPSPKSPPPPSVRYPPPPKQQ 127
                 P    P  P      +PP      P     Q
Sbjct: 687 PAAPAAPAGAAPAQPAPAPAATPPAGQADDPAAQPPQ 723

Length = 824

>gnl|CDD|236090 PRK07764, PRK07764, DNA polymerase III subunits gamma and tau; Validated

 Score = 41.1 bits (97), Expect = 2e-04
 Identities = 16/98 (16%), Positives = 21/98 (21%), Gaps = 1/98 (1%)

Query: 30  NPPPPPASKTPNCPPPPSSPS-PKTPPPPPPFVKSPPPPPPVVKSAPPPPPPVAKSPPPP 88
               P A   P  P  P+       P             P         P         P
Sbjct: 611 EAARPAAPAAPAAPAAPAPAGAAAAPAEASAAPAPGVAAPEHHPKHVAVPDASDGGDGWP 670

Query: 89  PPVVKSPPPPIVKPPPPNGPSPKSPPPPSVRYPPPPKQ 126
                + P      P P  P+  +   P+   P P   
Sbjct: 671 AKAGGAAPAAPPPAPAPAAPAAPAGAAPAQPAPAPAAT 708

Length = 824

>gnl|CDD|236090 PRK07764, PRK07764, DNA polymerase III subunits gamma and tau; Validated

 Score = 41.1 bits (97), Expect = 2e-04
 Identities = 19/91 (20%), Positives = 25/91 (27%), Gaps = 11/91 (12%)

Query: 43  PPPPSSPSPKTPPPPPPFVKSPPPPPPVVKSAPPPPPPVAKSPPPPPPVVKSPPPPIVKP 102
             P ++        P     +P P      +A  P P  A  P P P             
Sbjct: 392 GAPAAAAPSAAAAAPAA---APAPAAAAPAAAAAPAPAAAPQPAPAPAPA--------PA 440

Query: 103 PPPNGPSPKSPPPPSVRYPPPPKQQTCPIDA 133
           PP    +  +   PS      P  Q  P  A
Sbjct: 441 PPSPAGNAPAGGAPSPPPAAAPSAQPAPAPA 471

Length = 824

>gnl|CDD|236382 PRK09111, PRK09111, DNA polymerase III subunits gamma and tau; Validated

 Score = 41.4 bits (98), Expect = 2e-04
 Identities = 11/66 (16%), Positives = 14/66 (21%), Gaps = 1/66 (1%)

Query: 40  PNCPPPPSSPSPKTPPPPPPFVKSPPPPPPVVKSAPPPPPPVAKSPPPPPPVVKSPPPPI 99
                    P     P  P    +P        +A  P   +A  P         P P  
Sbjct: 393 SPGGGGGGPPGGGGAPGAPAAAAAPGAAAAA-PAAGGPAAALAAVPDAAAAAAAPPAPAA 451

Query: 100 VKPPPP 105
              P  
Sbjct: 452 APQPAV 457

Length = 598

>gnl|CDD|236382 PRK09111, PRK09111, DNA polymerase III subunits gamma and tau; Validated

 Score = 41.0 bits (97), Expect = 2e-04
 Identities = 12/66 (18%), Positives = 15/66 (22%), Gaps = 3/66 (4%)

Query: 28  SNNPPPPPASKTPNCPPPPSSPSPKTPPPPPPFVKSPPPPPPVVKSAPPPPPPVAKSPPP 87
                PP     P  P   ++P      P       P      V  A             
Sbjct: 396 GGGGGPPGGGGAPGAPAAAAAPGAAAAAPAAG---GPAAALAAVPDAAAAAAAPPAPAAA 452

Query: 88  PPPVVK 93
           P P V+
Sbjct: 453 PQPAVR 458

Length = 598

>gnl|CDD|237057 PRK12323, PRK12323, DNA polymerase III subunits gamma and tau; Provisional

 Score = 41.0 bits (96), Expect = 3e-04
 Identities = 22/96 (22%), Positives = 31/96 (32%), Gaps = 6/96 (6%)

Query: 28  SNNPPPPPASKTPNCPPPPSSPSPKTPPPPPPFVKSPPPPPPVVKSAPPPPPPVAKSPPP 87
           S  P    A++  +   P  +P+P   P   P   + P        A P P   A +  P
Sbjct: 427 SPAPEALAAARQASARGPGGAPAPAPAPAAAPAAAARPAA------AGPRPVAAAAAAAP 480

Query: 88  PPPVVKSPPPPIVKPPPPNGPSPKSPPPPSVRYPPP 123
                 + P P    PPP    P     P+   P  
Sbjct: 481 ARAAPAAAPAPADDDPPPWEELPPEFASPAPAQPDA 516

Length = 700

>gnl|CDD|236090 PRK07764, PRK07764, DNA polymerase III subunits gamma and tau; Validated

 Score = 41.1 bits (97), Expect = 3e-04
 Identities = 25/107 (23%), Positives = 29/107 (27%), Gaps = 4/107 (3%)

Query: 31  PPPPPASKTPNCPPPPSSPSPKTPPPPPPFVKSPPPPP---PVVKSAPPPPPPVAKSPPP 87
             P    K    P                   +PPP P        A   P   A +P  
Sbjct: 648 AAPEHHPKHVAVPDASDGGDGWPAKAGGAAPAAPPPAPAPAAPAAPAGAAPAQPAPAPAA 707

Query: 88  PPPVVKSPPPPIVKPPPPNGPSPKSP-PPPSVRYPPPPKQQTCPIDA 133
            PP  ++  P    P    G S  SP     V  PP P     P  A
Sbjct: 708 TPPAGQADDPAAQPPQAAQGASAPSPAADDPVPLPPEPDDPPDPAGA 754

Length = 824

>gnl|CDD|236940 PRK11633, PRK11633, cell division protein DedD; Provisional

 Score = 40.0 bits (94), Expect = 3e-04
 Identities = 27/100 (27%), Positives = 36/100 (36%), Gaps = 2/100 (2%)

Query: 32  PPPPASKTPNCPPPPSSPSPKTPPP-PPPFVKSPPPPPPVVKSAPPPPPPVAKSPPPPPP 90
           P P     P+  P  +   P  PP      V++     P +  A   PP      P P P
Sbjct: 45  PKPGDRDEPDMMPAATQALPTQPPEGAAEAVRAGDAAAPSLDPATVAPPNT-PVEPEPAP 103

Query: 91  VVKSPPPPIVKPPPPNGPSPKSPPPPSVRYPPPPKQQTCP 130
           V    P P+ KP P   P  K   PP+ +  P P  +   
Sbjct: 104 VEPPKPKPVEKPKPKPKPQQKVEAPPAPKPEPKPVVEEKA 143

Length = 226

>gnl|CDD|223039 PHA03307, PHA03307, transcriptional regulator ICP4; Provisional

 Score = 41.3 bits (97), Expect = 3e-04
 Identities = 25/95 (26%), Positives = 31/95 (32%), Gaps = 3/95 (3%)

Query: 31  PPPPPASKTPNCPPPPSSPSPKTPPPPPPFVKSPPPPPPVVKSAPP---PPPPVAKSPPP 87
           PP PP +  P  P P  S   +    P P   + PP      +A          A  P  
Sbjct: 118 PPTPPPASPPPSPAPDLSEMLRPVGSPGPPPAASPPAAGASPAAVASDAASSRQAALPLS 177

Query: 88  PPPVVKSPPPPIVKPPPPNGPSPKSPPPPSVRYPP 122
            P      P      PPP+ P   + P P  R  P
Sbjct: 178 SPEETARAPSSPPAEPPPSTPPAAASPRPPRRSSP 212

Length = 1352

>gnl|CDD|223039 PHA03307, PHA03307, transcriptional regulator ICP4; Provisional

 Score = 40.9 bits (96), Expect = 3e-04
 Identities = 20/94 (21%), Positives = 27/94 (28%)

Query: 31  PPPPPASKTPNCPPPPSSPSPKTPPPPPPFVKSPPPPPPVVKSAPPPPPPVAKSPPPPPP 90
            P PP    P   PPPS     +    P     PPP      +   P    + +      
Sbjct: 113 SPDPPPPTPPPASPPPSPAPDLSEMLRPVGSPGPPPAASPPAAGASPAAVASDAASSRQA 172

Query: 91  VVKSPPPPIVKPPPPNGPSPKSPPPPSVRYPPPP 124
            +    P      P + P+   P  P     P P
Sbjct: 173 ALPLSSPEETARAPSSPPAEPPPSTPPAAASPRP 206

Length = 1352

>gnl|CDD|235899 PRK06975, PRK06975, bifunctional uroporphyrinogen-III synthetase/uroporphyrin-III C-methyltransferase; Reviewed

 Score = 40.9 bits (96), Expect = 3e-04
 Identities = 12/48 (25%), Positives = 16/48 (33%)

Query: 43  PPPPSSPSPKTPPPPPPFVKSPPPPPPVVKSAPPPPPPVAKSPPPPPP 90
            P  ++P+P               P     +  PPP P A  P PP  
Sbjct: 271 QPATAAPAPSRMTDTNDSKSVTSQPAAAAAAPAPPPNPPATPPEPPAR 318

Length = 656

>gnl|CDD|219321 pfam07174, FAP, Fibronectin-attachment protein (FAP)

 Score = 40.6 bits (95), Expect = 3e-04
 Identities = 23/65 (35%), Positives = 25/65 (38%)

Query: 51  PKTPPPPPPFVKSPPPPPPVVKSAPPPPPPVAKSPPPPPPVVKSPPPPIVKPPPPNGPSP 110
           P  PP       +P  PPP    A PP P        PPP    P  P   P  PN P P
Sbjct: 44  PPPPPSTAAAAPAPAAPPPPPPPAAPPAPQPDDPNAAPPPPPADPNAPPPPPVDPNAPPP 103

Query: 111 KSPPP 115
            +P P
Sbjct: 104 PAPEP 108

This family contains bacterial fibronectin-attachment proteins (FAP). Family members are rich in alanine and proline, are approximately 300 long, and seem to be restricted to mycobacteria. These proteins contain a fibronectin-binding motif that allows mycobacteria to bind to fibronectin in the extracellular matrix. Length = 297

>gnl|CDD|234012 TIGR02784, addA_alphas, double-strand break repair helicase AddA, alphaproteobacterial type

 Score = 40.8 bits (96), Expect = 3e-04
 Identities = 14/83 (16%), Positives = 20/83 (24%), Gaps = 9/83 (10%)

Query: 46  PSSPSPKTPPPPPPFVKSPPPPPPVVKSAPPPPPPVAKSPPPPPPVVKSPPPPIVKPPPP 105
              P P           +     PV                  P  +++P P     P P
Sbjct: 892 WQEPHPAQGKAEWRLRFTRRDWDPV-GLPVEAAQTDTL--EALPDWLRAPAPAEPALPRP 948

Query: 106 NGPS------PKSPPPPSVRYPP 122
             PS        + P  +VR   
Sbjct: 949 LAPSGLGGAIDSALPGEAVRSSL 971

AddAB, also called RexAB, substitutes for RecBCD in several bacterial lineages. These DNA recombination proteins act before synapse and are particularly important for DNA repair of double-stranded breaks by homologous recombination. The term AddAB is used broadly, with AddA homologous between the alphaproteobacteria (as modeled here) and the Firmicutes, while the partner AddB proteins show no strong homology across the two groups of species [DNA metabolism, DNA replication, recombination, and repair]. Length = 1135

>gnl|CDD|236138 PRK07994, PRK07994, DNA polymerase III subunits gamma and tau; Validated

 Score = 40.2 bits (95), Expect = 4e-04
 Identities = 14/61 (22%), Positives = 19/61 (31%)

Query: 64  PPPPPPVVKSAPPPPPPVAKSPPPPPPVVKSPPPPIVKPPPPNGPSPKSPPPPSVRYPPP 123
           P  P P  +  P    P A +     P     PP     PPP   +P+  P   +     
Sbjct: 361 PAAPLPEPEVPPQSAAPAASAQATAAPTAAVAPPQAPAVPPPPASAPQQAPAVPLPETTS 420

Query: 124 P 124
            
Sbjct: 421 Q 421

Length = 647

>gnl|CDD|236138 PRK07994, PRK07994, DNA polymerase III subunits gamma and tau; Validated

 Score = 40.2 bits (95), Expect = 4e-04
 Identities = 17/104 (16%), Positives = 22/104 (21%), Gaps = 3/104 (2%)

Query: 30  NPPPPPASKTPNCPPPPSSPSPKTPPPPPPFVKSPPPPPPVVKSAPPPPPPVAKSPPPPP 89
               P A+  P   P    P    P   P           +           A       
Sbjct: 383 ATAAPTAAVAPPQAPAVPPPPASAPQQAPAVPLPETTSQLLAARQQLQRAQGATKAKKSE 442

Query: 90  PVVKSPPPPIVKPPPPNGPSPKSPPPPSVRYPPPPKQQTCPIDA 133
           P   S   P+              P PS     P K++     A
Sbjct: 443 PAAASRARPV---NSALERLASVRPAPSALEKAPAKKEAYRWKA 483

Length = 647

>gnl|CDD|218621 pfam05518, Totivirus_coat, Totivirus coat protein

 Score = 40.2 bits (94), Expect = 4e-04
 Identities = 16/66 (24%), Positives = 19/66 (28%), Gaps = 6/66 (9%)

Query: 33  PPPASKTPNCPPPPSSPSPKTPPPPPPFVKSPPPPPPVVKSAPPPPPPVAKSPPPPPPVV 92
              A + P    PP       PPP  P   +  P P        P  P    P P PP  
Sbjct: 691 ALRAPQAPRPGGPPGGGGGLPPPPDLP--AAAGPAPCGSSLIASPTAP----PEPEPPGA 744

Query: 93  KSPPPP 98
           +     
Sbjct: 745 EQADGA 750

Length = 753

>gnl|CDD|235904 PRK06995, flhF, flagellar biosynthesis regulator FlhF; Validated

 Score = 40.3 bits (95), Expect = 4e-04
 Identities = 14/90 (15%), Positives = 22/90 (24%), Gaps = 4/90 (4%)

Query: 43  PPPPSSPSPKTPPPPPPFVKSPPPPPPVVKSAP----PPPPPVAKSPPPPPPVVKSPPPP 98
           PP  ++P+   PPP         P  P  + AP          A+             P 
Sbjct: 53  PPAAAAPAAAQPPPAAAPAAVSRPAAPAAEPAPWLVEHAKRLTAQREQLVARAAAPAAPE 112

Query: 99  IVKPPPPNGPSPKSPPPPSVRYPPPPKQQT 128
              P  P   +        +        + 
Sbjct: 113 AQAPAAPAERAAAENAARRLARAAAAAPRP 142

Length = 484

>gnl|CDD|222095 pfam13388, DUF4106, Protein of unknown function (DUF4106)

 Score = 40.4 bits (94), Expect = 4e-04
 Identities = 21/82 (25%), Positives = 28/82 (34%), Gaps = 8/82 (9%)

Query: 54  PPPPPPFVKSPPPPPPVVKS-------AP-PPPPPVAKSPPPPPPVVKSPPPPIVKPPPP 105
           PP PP    +P  P     S       AP P   P  ++P   P V      P  +P   
Sbjct: 173 PPNPPREAPAPGLPKTFTSSHGHRHRHAPKPTQQPTVQNPAQQPTVQNPAQQPQQQPQQQ 232

Query: 106 NGPSPKSPPPPSVRYPPPPKQQ 127
                + P P +    PP  +Q
Sbjct: 233 PVQPAQQPTPQNPAQQPPQTEQ 254

This family of proteins are found in large numbers in the Trichomonas vaginalis proteome. The function of this protein is unknown. Length = 422

>gnl|CDD|235899 PRK06975, PRK06975, bifunctional uroporphyrinogen-III synthetase/uroporphyrin-III C-methyltransferase; Reviewed

 Score = 40.5 bits (95), Expect = 4e-04
 Identities = 11/54 (20%), Positives = 11/54 (20%), Gaps = 3/54 (5%)

Query: 54  PPPPPPFVKSPPPPPPVVKSAPPPPPPVAKSPPPPPPVVKSPPPPIVKPPPPNG 107
           P    P                 P    A   PPP P      PP        G
Sbjct: 272 PATAAPAPSRMTDTNDSKSVTSQPAAAAAAPAPPPNPPA---TPPEPPARRGRG 322

Length = 656

>gnl|CDD|223880 COG0810, TonB, Periplasmic protein TonB, links inner and outer membranes [Cell envelope biogenesis, outer membrane]

 Score = 40.2 bits (94), Expect = 4e-04
 Identities = 23/87 (26%), Positives = 26/87 (29%)

Query: 30  NPPPPPASKTPNCPPPPSSPSPKTPPPPPPFVKSPPPPPPVVKSAPPPPPPVAKSPPPPP 89
                P  +    P PP         P  P   +PP P    K    P  P  K  P P 
Sbjct: 47  KVLEAPTEEPQPEPEPPEEQPKPPTEPETPPEPTPPKPKEKPKPEKKPKKPKPKPKPKPK 106

Query: 90  PVVKSPPPPIVKPPPPNGPSPKSPPPP 116
           P  K  P P  K PP    +     P 
Sbjct: 107 PKPKVKPQPKPKKPPSKTAAKAPAAPN 133

Length = 244

>gnl|CDD|223880 COG0810, TonB, Periplasmic protein TonB, links inner and outer membranes [Cell envelope biogenesis, outer membrane]

 Score = 39.8 bits (93), Expect = 4e-04
 Identities = 24/79 (30%), Positives = 27/79 (34%)

Query: 31  PPPPPASKTPNCPPPPSSPSPKTPPPPPPFVKSPPPPPPVVKSAPPPPPPVAKSPPPPPP 90
           P P P  + P  P  P +P   TPP P    K    P        P P P  K  P P P
Sbjct: 58  PEPEPPEEQPKPPTEPETPPEPTPPKPKEKPKPEKKPKKPKPKPKPKPKPKPKVKPQPKP 117

Query: 91  VVKSPPPPIVKPPPPNGPS 109
                      P  PN P+
Sbjct: 118 KKPPSKTAAKAPAAPNQPA 136

Length = 244

>gnl|CDD|234630 PRK00095, mutL, DNA mismatch repair protein; Reviewed

 Score = 40.6 bits (96), Expect = 4e-04
 Identities = 34/182 (18%), Positives = 54/182 (29%), Gaps = 27/182 (14%)

Query: 32  PPPPASKTPNCPPPPSSPSPKTPPPPPPFVKSPPPPPPVVKSAPPPPPPVAKSPPPPPPV 91
              PA+   N    P+ P P      P +     PP     SAPP     ++        
Sbjct: 329 GLIPAAAGANQVLEPAEPEPLPLQQTPLYASGSSPPASSPSSAPPEQSEESQEESSAEKN 388

Query: 92  VKSPPPPIVKPPPPNGPSPKSPPPPSVRYPPPPKQQTCPIDALKLGACVDVLGGLIHIGL 151
              P     +          +  P +   P    +     D+  LG  +  L G  +I  
Sbjct: 389 PLQPNASQSEAAAAASAEAAAAAPAAAPEPAEAAE---EADSFPLGYALGQLHG-TYI-- 442

Query: 152 GDSAKEKCCPLLQ---GLA--DLDAA------VCLCTAIRLKALNLINLLVPISLQVLVN 200
                     L +   GL   D  AA        L   +    L    LL+P+ L++  +
Sbjct: 443 ----------LAENEDGLYLVDQHAAHERLLYEQLKDKLAEVGLASQPLLIPLVLELSED 492

Query: 201 DC 202
           + 
Sbjct: 493 EA 494

Length = 617

>gnl|CDD|185628 PTZ00449, PTZ00449, 104 kDa microneme/rhoptry antigen; Provisional

 Score = 40.4 bits (94), Expect = 4e-04
 Identities = 31/91 (34%), Positives = 33/91 (36%), Gaps = 2/91 (2%)

Query: 28  SNNPPPPPASKTPNCPPPPSSPSPKTPPPPPPFVKSPPPPPPVVKSAPPPPPPVAKSP-- 85
           S  P  P   K P  P  P  P        P   KSP  P  +     P  P   KSP  
Sbjct: 576 SKKPEFPKDPKHPKDPEEPKKPKRPRSAQRPTRPKSPKLPELLDIPKSPKRPESPKSPKR 635

Query: 86  PPPPPVVKSPPPPIVKPPPPNGPSPKSPPPP 116
           PPPP    SP  P       +   PKSP PP
Sbjct: 636 PPPPQRPSSPERPEGPKIIKSPKPPKSPKPP 666

Length = 943

>gnl|CDD|215533 PLN02983, PLN02983, biotin carboxyl carrier protein of acetyl-CoA carboxylase

 Score = 39.8 bits (93), Expect = 4e-04
 Identities = 25/60 (41%), Positives = 27/60 (45%)

Query: 54  PPPPPPFVKSPPPPPPVVKSAPPPPPPVAKSPPPPPPVVKSPPPPIVKPPPPNGPSPKSP 113
           PPPP P V   PPPP  +  A PP    A S P   P      PP  K P  + P  KSP
Sbjct: 144 PPPPAPVVMMQPPPPHAMPPASPPAAQPAPSAPASSPPPTPASPPPAKAPKSSHPPLKSP 203

Length = 274

>gnl|CDD|223021 PHA03247, PHA03247, large tegument protein UL36; Provisional

 Score = 40.3 bits (94), Expect = 5e-04
 Identities = 27/104 (25%), Positives = 33/104 (31%), Gaps = 4/104 (3%)

Query: 31   PPPPPASKTPNCPPPPSSPSPKTPPPPPPFVKSPPPPPPVVKSAPPPPP-PVAKSPPPPP 89
            P     S++    P P  P+        P    PP   P     PP    P A  PPP P
Sbjct: 2786 PAVASLSESRESLPSPWDPADPPAAVLAPAAALPPAASPAGPLPPPTSAQPTAPPPPPGP 2845

Query: 90   PVVKSPPPPIVKPPPP---NGPSPKSPPPPSVRYPPPPKQQTCP 130
            P    P    V P        PS      P+    PP ++   P
Sbjct: 2846 PPPSLPLGGSVAPGGDVRRRPPSRSPAAKPAAPARPPVRRLARP 2889

Length = 3151

>gnl|CDD|183854 PRK13042, PRK13042, superantigen-like protein; Reviewed

 Score = 40.0 bits (93), Expect = 5e-04
 Identities = 19/70 (27%), Positives = 24/70 (34%)

Query: 56  PPPPFVKSPPPPPPVVKSAPPPPPPVAKSPPPPPPVVKSPPPPIVKPPPPNGPSPKSPPP 115
           P    V++P   PP  K   P   P A +PP          P    P      +P+SP  
Sbjct: 33  PSSTKVEAPQSTPPSTKVEAPQSKPNATTPPSTKVEAPQQTPNATTPSSTKVETPQSPTT 92

Query: 116 PSVRYPPPPK 125
             V     PK
Sbjct: 93  KQVPTEINPK 102

Length = 291

>gnl|CDD|217392 pfam03153, TFIIA, Transcription factor IIA, alpha/beta subunit

 Score = 39.7 bits (93), Expect = 5e-04
 Identities = 23/118 (19%), Positives = 35/118 (29%), Gaps = 15/118 (12%)

Query: 19  LLTSLACDCSNNPPPPPASKTPNCPPPPSSPSPKTPPPPPPFVKSPPPPPPVVKSAP--- 75
           L  S   +   +P P         PP    P P   PPP   +++ P       + P   
Sbjct: 39  LSQSGVAEFPWDPSPQAP------PPVAQLPQPLPQPPPTQALQALPAGDQQQHNTPTGS 92

Query: 76  ---PPPPPVAKSPPPPPPVVKSPPPPIVKPPPPNG---PSPKSPPPPSVRYPPPPKQQ 127
               PP   A    P  P +++ P  +     P         SP     +     + Q
Sbjct: 93  PAANPPATFALPAGPAGPTIQTEPGQLYPVQVPVMVTQNPANSPLDQPAQQRALQQLQ 150

Transcription initiation factor IIA (TFIIA) is a heterotrimer, the three subunits being known as alpha, beta, and gamma, in order of molecular weight. The N and C-terminal domains of the gamma subunit are represented in pfam02268 and pfam02751, respectively. This family represents the precursor that yields both the alpha and beta subunits. The TFIIA heterotrimer is an essential general transcription initiation factor for the expression of genes transcribed by RNA polymerase II. Together with TFIID, TFIIA binds to the promoter region; this is the first step in the formation of a pre-initiation complex (PIC). Binding of the rest of the transcription machinery follows this step. After initiation, the PIC does not completely dissociate from the promoter. Some components, including TFIIA, remain attached and re-initiate a subsequent round of transcription. Length = 332

>gnl|CDD|200219 TIGR02927, SucB_Actino, 2-oxoglutarate dehydrogenase, E2 component, dihydrolipoamide succinyltransferase

 Score = 40.0 bits (93), Expect = 5e-04
 Identities = 10/54 (18%), Positives = 17/54 (31%)

Query: 63  SPPPPPPVVKSAPPPPPPVAKSPPPPPPVVKSPPPPIVKPPPPNGPSPKSPPPP 116
           + P  P   ++  P       +P P      + P P    P P   +  +   P
Sbjct: 205 AAPAEPAEEEAPAPSEAGSEPAPDPAARAPHAAPDPPAPAPAPAKTAAPAAAAP 258

This model represents an Actinobacterial clade of E2 enzyme, a component of the 2-oxoglutarate dehydrogenase complex involved in the TCA cycle. These proteins have multiple domains including the catalytic domain (pfam00198), one or two biotin domains (pfam00364) and an E3-component binding domain (pfam02817). Length = 579

>gnl|CDD|218191 pfam04652, DUF605, Vta1 like

 Score = 39.7 bits (93), Expect = 6e-04
 Identities = 20/68 (29%), Positives = 29/68 (42%), Gaps = 2/68 (2%)

Query: 30  NPPPPPASKTPNCPP--PPSSPSPKTPPPPPPFVKSPPPPPPVVKSAPPPPPPVAKSPPP 87
           + PP P+S   + PP  P S  +P  PP P      P    P + +A P PP  + +P P
Sbjct: 211 SLPPAPSSFQSDTPPPSPESPTNPSPPPGPAAPPPPPVQQVPPLSTAKPTPPSASATPAP 270

Query: 88  PPPVVKSP 95
              +    
Sbjct: 271 IGGITLDD 278

Vta1 (VPS20-associated protein 1) is a positive regulator of Vps4. Vps4 is an ATPase that is required in the multivesicular body (MVB) sorting pathway to dissociate the endosomal sorting complex required for transport (ESCRT). Vta1 promotes correct assembly of Vps4 and stimulates its ATPase activity through its conserved Vta1/SBP1/LIP5 region. Length = 315

>gnl|CDD|235124 PRK03427, PRK03427, cell division protein ZipA; Provisional

 Score = 39.6 bits (93), Expect = 6e-04
 Identities = 24/101 (23%), Positives = 31/101 (30%), Gaps = 5/101 (4%)

Query: 35  PASKTPNCPPPPSSPSPKTPPPPPPFVKSPPPPPPVVKS--APPPPPPVAKSPPPPPPVV 92
             +  P       +  P       P   S  P  PV +   A  PP    +   P P  V
Sbjct: 70  RVNHAPANAQEHEAARPSPQHQYQPPYASAQPRQPVQQPPEAQVPPQHAPRPAQPAPQPV 129

Query: 93  KSPP--PPIVKPP-PPNGPSPKSPPPPSVRYPPPPKQQTCP 130
           + P   P   +P   P  P     P P    P P +Q   P
Sbjct: 130 QQPAYQPQPEQPLQQPVSPQVAPAPQPVHSAPQPAQQAFQP 170

Length = 333

>gnl|CDD|236382 PRK09111, PRK09111, DNA polymerase III subunits gamma and tau; Validated

 Score = 39.9 bits (94), Expect = 6e-04
 Identities = 15/72 (20%), Positives = 20/72 (27%), Gaps = 4/72 (5%)

Query: 54  PPPPPPFVKSPPPPPPVVKSAPPPPPPVAKSPPPPPPVVKSPPPPIVKPPPPNGPSPKSP 113
           PP P          PP    AP  P   A             P   +   P    +  +P
Sbjct: 391 PPSPGG----GGGGPPGGGGAPGAPAAAAAPGAAAAAPAAGGPAAALAAVPDAAAAAAAP 446

Query: 114 PPPSVRYPPPPK 125
           P P+    P  +
Sbjct: 447 PAPAAAPQPAVR 458

Length = 598

>gnl|CDD|217469 pfam03276, Gag_spuma, Spumavirus gag protein

 Score = 39.9 bits (93), Expect = 6e-04
 Identities = 21/84 (25%), Positives = 26/84 (30%)

Query: 31  PPPPPASKTPNCPPPPSSPSPKTPPPPPPFVKSPPPPPPVVKSAPPPPPPVAKSPPPPPP 90
               P +  P  P       P +    P    +P    P V   P  P P    P  PP 
Sbjct: 179 GGNIPGAIQPPPPSSLPGLPPGSSSLAPSASSTPGNRLPRVSFNPFLPGPSPAQPSAPPA 238

Query: 91  VVKSPPPPIVKPPPPNGPSPKSPP 114
            + +PP P V       P P   P
Sbjct: 239 SIPAPPIPPVIQYVAPPPVPPPQP 262

Length = 582

>gnl|CDD|223061 PHA03369, PHA03369, capsid maturational protease; Provisional

 Score = 40.0 bits (93), Expect = 6e-04
 Identities = 20/88 (22%), Positives = 25/88 (28%), Gaps = 6/88 (6%)

Query: 33  PPPASKTPNCPPPPSSPSPKTPPPPPPFVKSPPPPPPVVKSAPPPPPPVAKSPPPPPPVV 92
                     P   + P+ +  P  P  +    P      S     PPV +    P  V 
Sbjct: 362 AAAKVAVIAAPQTHTGPADRQRPQRPDGIPYSVPAR----SPMTAYPPVPQFCGDPGLVS 417

Query: 93  KSPPPPIVK--PPPPNGPSPKSPPPPSV 118
              P        P P GP P  P  P V
Sbjct: 418 PYNPQSPGTSYGPEPVGPVPPQPTNPYV 445

Length = 663

>gnl|CDD|237011 PRK11892, PRK11892, pyruvate dehydrogenase subunit beta; Provisional

 Score = 39.5 bits (93), Expect = 6e-04
 Identities = 9/52 (17%), Positives = 14/52 (26%), Gaps = 3/52 (5%)

Query: 48  SPSPKTPPPPPPFVKSPPPPPPVVKSAPPPPPPVAKSPPPPPPVVKSPPPPI 99
           S +   P        +    P    +A       A + P  P    +  P I
Sbjct: 85  SDAGAAPAAAAE---AAAAAPAAAAAAAAKKAAPAPAAPAAPAAEVAADPDI 133

Length = 464

>gnl|CDD|237862 PRK14948, PRK14948, DNA polymerase III subunits gamma and tau; Provisional

 Score = 39.6 bits (93), Expect = 7e-04
 Identities = 16/82 (19%), Positives = 24/82 (29%)

Query: 65  PPPPPVVKSAPPPPPPVAKSPPPPPPVVKSPPPPIVKPPPPNGPSPKSPPPPSVRYPPPP 124
                +  ++ P  P  A +P PPP  ++   P   +      P P    PP      P 
Sbjct: 363 AFISEIANASAPANPTPAPNPSPPPAPIQPSAPKTKQAATTPSPPPAKASPPIPVPAEPT 422

Query: 125 KQQTCPIDALKLGACVDVLGGL 146
           +    P            L  L
Sbjct: 423 EPSPTPPANAANAPPSLNLEEL 444

Length = 620

>gnl|CDD|237605 PRK14086, dnaA, chromosomal replication initiation protein; Provisional

 Score = 39.4 bits (92), Expect = 7e-04
 Identities = 18/103 (17%), Positives = 26/103 (25%), Gaps = 8/103 (7%)

Query: 26  DCSNNPPPPPASKTPNCPPPPSSPSPKTPPPPPPFVKSPPPPPPVVKSAPPPPPPVAKSP 85
           D S   P PP       P    +  P+ P P     +    P    +    P      + 
Sbjct: 89  DPSAGEPAPPP------PHARRTSEPELPRPGRRPYEGYGGPRADDRPPGLPRQDQLPTA 142

Query: 86  PPPPPVVKSPPPPIVKPPPPNGPSPKSPP--PPSVRYPPPPKQ 126
            P  P  +  P P   P   +    +      P       P  
Sbjct: 143 RPAYPAYQQRPEPGAWPRAADDYGWQQQRLGFPPRAPYASPAS 185

Length = 617

>gnl|CDD|215145 PLN02258, PLN02258, 9-cis-epoxycarotenoid dioxygenase NCED

 Score = 39.7 bits (93), Expect = 7e-04
 Identities = 18/73 (24%), Positives = 21/73 (28%), Gaps = 2/73 (2%)

Query: 33  PPPASKTPNCPPPPSSPSPKTPPPPPPFVKSPPPPPPVVKSA--PPPPPPVAKSPPPPPP 90
               +         SS S     PP      P    P   S    P   P+ K   P PP
Sbjct: 3   SSNPTSRSQSHASSSSSSSSQSSPPSSTSPRPRRRKPSASSLLHTPSILPLPKLSSPSPP 62

Query: 91  VVKSPPPPIVKPP 103
            V  PP    + P
Sbjct: 63  SVTLPPAATTQTP 75

Length = 590

>gnl|CDD|236138 PRK07994, PRK07994, DNA polymerase III subunits gamma and tau; Validated

 Score = 39.5 bits (93), Expect = 8e-04
 Identities = 15/80 (18%), Positives = 25/80 (31%), Gaps = 2/80 (2%)

Query: 49  PSPKTPPPPPPFVKSPPPPPPVVKSAPPPPPPVAKSPPPPPPVVKSPP--PPIVKPPPPN 106
           P+   P P  P   + P       +AP       ++P  PPP   +P   P +  P   +
Sbjct: 361 PAAPLPEPEVPPQSAAPAASAQATAAPTAAVAPPQAPAVPPPPASAPQQAPAVPLPETTS 420

Query: 107 GPSPKSPPPPSVRYPPPPKQ 126
                       +     K+
Sbjct: 421 QLLAARQQLQRAQGATKAKK 440

Length = 647

>gnl|CDD|184927 PRK14963, PRK14963, DNA polymerase III subunits gamma and tau; Provisional

 Score = 39.4 bits (92), Expect = 8e-04
 Identities = 13/66 (19%), Positives = 19/66 (28%), Gaps = 1/66 (1%)

Query: 31  PPPPPASKTPNCPPPPSSPSPKTPPPPPPFVKSPPPPP-PVVKSAPPPPPPVAKSPPPPP 89
           P P   ++  N            P        +P P   P  +  P P P  +   PP  
Sbjct: 358 PAPADLTQRLNRLEKEVRSLRSAPTAAATAAGAPLPDFDPRPRGPPAPEPARSAEAPPLV 417

Query: 90  PVVKSP 95
               +P
Sbjct: 418 APAAAP 423

Length = 504

>gnl|CDD|227505 COG5178, PRP8, U5 snRNP spliceosome subunit [RNA processing and modification]

 Score = 39.6 bits (92), Expect = 8e-04
 Identities = 20/37 (54%), Positives = 21/37 (56%), Gaps = 9/37 (24%)

Query: 45 PPSSPSPKTPPPPPPFVKSPPPPPPVVKSAPPPPPPV 81
          PP +P P  PPPPP F   PP  PP     PPPPP V
Sbjct: 5  PPGNPPP--PPPPPGF--EPPSQPP-----PPPPPGV 32

Length = 2365

>gnl|CDD|183854 PRK13042, PRK13042, superantigen-like protein; Reviewed

 Score = 39.2 bits (91), Expect = 9e-04
 Identities = 16/65 (24%), Positives = 23/65 (35%), Gaps = 1/65 (1%)

Query: 66  PPPPVVKSAPPPPPPVAKSPPPPPPVVKSPPPPIVKPPPPNGPSPKSPPPPSVRYPPPPK 125
           P    V++    PP      P   P   +PP   V+ P    P+  +P    V  P  P 
Sbjct: 33  PSSTKVEAPQSTPPSTKVEAPQSKPNATTPPSTKVEAPQQT-PNATTPSSTKVETPQSPT 91

Query: 126 QQTCP 130
            +  P
Sbjct: 92  TKQVP 96

Length = 291

>gnl|CDD|237011 PRK11892, PRK11892, pyruvate dehydrogenase subunit beta; Provisional

 Score = 39.1 bits (92), Expect = 9e-04
 Identities = 7/47 (14%), Positives = 13/47 (27%)

Query: 43  PPPPSSPSPKTPPPPPPFVKSPPPPPPVVKSAPPPPPPVAKSPPPPP 89
              P++ +      P     +         +AP  P     + P  P
Sbjct: 88  GAAPAAAAEAAAAAPAAAAAAAAKKAAPAPAAPAAPAAEVAADPDIP 134

Length = 464

>gnl|CDD|223021 PHA03247, PHA03247, large tegument protein UL36; Provisional

 Score = 39.5 bits (92), Expect = 0.001
 Identities = 24/92 (26%), Positives = 31/92 (33%)

Query: 33  PPPASKTPNCPPPPSSPSPKTPPPPPPFVKSPPPPPPVVKSAPPPPPPVAKSPPPPPPVV 92
           P       +    P++P P + P P P       PPP     P   P     P PPP   
Sbjct: 394 PFARGPGGDDQTRPAAPVPASVPTPAPTPVPASAPPPPATPLPSAEPGSDDGPAPPPERQ 453

Query: 93  KSPPPPIVKPPPPNGPSPKSPPPPSVRYPPPP 124
              P     P  P+  + K+      R PP P
Sbjct: 454 PPAPATEPAPDDPDDATRKALDALRERRPPEP 485

Length = 3151

>gnl|CDD|223021 PHA03247, PHA03247, large tegument protein UL36; Provisional

 Score = 39.2 bits (91), Expect = 0.001
 Identities = 31/110 (28%), Positives = 38/110 (34%), Gaps = 17/110 (15%)

Query: 30   NPPPPPASKTPNCPPPPSSPSPKTPPPPPPFVKSPPPPPPVVKSAPP----------PPP 79
            +P PP        PPPPS       P P P    PPP  P    AP              
Sbjct: 2615 SPLPPDTHAPD--PPPPSPSPAANEPDPHPPPTVPPPERPRDDPAPGRVSRPRRARRLGR 2672

Query: 80   PVAKSPPPPPPVVKSPPPPI-----VKPPPPNGPSPKSPPPPSVRYPPPP 124
                S PP  P  ++  P +     +  PPP  P+P+  P   V   P P
Sbjct: 2673 AAQASSPPQRPRRRAARPTVGSLTSLADPPPPPPTPEPAPHALVSATPLP 2722

Length = 3151

>gnl|CDD|236090 PRK07764, PRK07764, DNA polymerase III subunits gamma and tau; Validated

 Score = 39.2 bits (92), Expect = 0.001
 Identities = 18/106 (16%), Positives = 23/106 (21%), Gaps = 3/106 (2%)

Query: 28  SNNPPPPPASKTPNC--PPPPSSPSPKTPPPPPPFVKSPPPPPPVVKSAPPPPPPVAKSP 85
              P P  +        P  P++P+    P P     +P             P    K  
Sbjct: 598 EGPPAPASSGPPEEAARPAAPAAPAAPAAPAPAGAAAAPAEASAAPAPGVAAPEHHPKHV 657

Query: 86  PPPPPVVKSPP-PPIVKPPPPNGPSPKSPPPPSVRYPPPPKQQTCP 130
             P         P       P  P P   P            Q  P
Sbjct: 658 AVPDASDGGDGWPAKAGGAAPAAPPPAPAPAAPAAPAGAAPAQPAP 703

Length = 824

>gnl|CDD|240289 PTZ00144, PTZ00144, dihydrolipoamide succinyltransferase; Provisional

 Score = 38.9 bits (91), Expect = 0.001
 Identities = 16/65 (24%), Positives = 19/65 (29%), Gaps = 6/65 (9%)

Query: 64  PPPPPPVVKSAPPPPPPVAKSPPPPPPVVKSPPPPIVKPPPPNGPSPKSPPPPSVRYPPP 123
           PP   P   +A        + P    P    P PP    P P   + K P P       P
Sbjct: 124 PPAAAPAAAAAAKAEKTTPEKPKAAAPT---PEPPAASKPTPP-AAAKPPEPAP--AAKP 177

Query: 124 PKQQT 128
           P    
Sbjct: 178 PPTPV 182

Length = 418

>gnl|CDD|218621 pfam05518, Totivirus_coat, Totivirus coat protein

 Score = 39.4 bits (92), Expect = 0.001
 Identities = 14/59 (23%), Positives = 15/59 (25%), Gaps = 5/59 (8%)

Query: 31  PPPPPASKTPNCPPPPSSPSPKTPPPPPPFVKSPPPPPPVVKSAPPPPPPVAKSPPPPP 89
           P P          PPP        P P        P  P     P P PP A+      
Sbjct: 698 PRPGGPPGGGGGLPPPPDLPAAAGPAPCGSSLIASPTAP-----PEPEPPGAEQADGAE 751

Length = 753

>gnl|CDD|223039 PHA03307, PHA03307, transcriptional regulator ICP4; Provisional

 Score = 39.4 bits (92), Expect = 0.001
 Identities = 24/97 (24%), Positives = 26/97 (26%)

Query: 28  SNNPPPPPASKTPNCPPPPSSPSPKTPPPPPPFVKSPPPPPPVVKSAPPPPPPVAKSPPP 87
             +P PP  S     PP P   SP   P P       P   P    A  PP   A     
Sbjct: 103 EGSPTPPGPSSPDPPPPTPPPASPPPSPAPDLSEMLRPVGSPGPPPAASPPAAGASPAAV 162

Query: 88  PPPVVKSPPPPIVKPPPPNGPSPKSPPPPSVRYPPPP 124
                 S    +    P       S PP       PP
Sbjct: 163 ASDAASSRQAALPLSSPEETARAPSSPPAEPPPSTPP 199

Length = 1352

>gnl|CDD|235906 PRK07003, PRK07003, DNA polymerase III subunits gamma and tau; Validated

 Score = 39.1 bits (91), Expect = 0.001
 Identities = 25/112 (22%), Positives = 33/112 (29%), Gaps = 1/112 (0%)

Query: 32  PPPPASKTPNCPPPPSSPSPKTPPPPPPFVKSPPPPPPVVKSAPPPPPPVAKSPPPPPPV 91
             P  +K        S    +   PP     +  P       A   P P A +P    P 
Sbjct: 446 DAPVPAKANARASADSRCDERDAQPPADSGSASAPASDAPPDAAFEPAPRAAAPSAATPA 505

Query: 92  VKSPPPPIVKPPPPNGPSPKSPPPPSVRYPPPPKQQTCPIDALKLGACVDVL 143
                         + P+  +PP P  R PP P        A    A +DVL
Sbjct: 506 AVPDARAPAAASREDAPAAAAPPAPEAR-PPTPAAAAPAARAGGAAAALDVL 556

Length = 830

>gnl|CDD|237940 PRK15313, PRK15313, autotransport protein MisL; Provisional

 Score = 39.0 bits (90), Expect = 0.001
 Identities = 26/74 (35%), Positives = 30/74 (40%), Gaps = 5/74 (6%)

Query: 32  PPPPASKTPNCP--PPPSSPSPKTPPPPPPFVKSPPPPPPVVKSAPPPPPPVAKSPPPP- 88
           P  P    P  P  P P  P P  P P  P +  P  P PV    P  P PV    P P 
Sbjct: 560 PDEPIIPDPVDPVIPDPVIPDPVDPDPVDPVIPDPVIPDPV-DPDPVDPEPVDPVIPDPT 618

Query: 89  -PPVVKSPPPPIVK 101
            P + +S  PPI +
Sbjct: 619 IPDIGQSDTPPITE 632

Length = 955

>gnl|CDD|234938 PRK01297, PRK01297, ATP-dependent RNA helicase RhlB; Provisional

 Score = 39.1 bits (91), Expect = 0.001
 Identities = 17/76 (22%), Positives = 21/76 (27%), Gaps = 4/76 (5%)

Query: 50  SPKTPPPPPPFVKSPPPPPPVVKSAPPPPPPVAKSPPPPPPVVKSPPPPIVKPPPPNGPS 109
               P PP P     PPPP         P   A +P    P  + P     +      P+
Sbjct: 15  EQPAPAPPSPAAAPAPPPPA----KTAAPATKAAAPAAAAPRAEKPKKDKPRRERKPKPA 70

Query: 110 PKSPPPPSVRYPPPPK 125
                   V  P   K
Sbjct: 71  SLWKLEDFVVEPQEGK 86

Length = 475

>gnl|CDD|215533 PLN02983, PLN02983, biotin carboxyl carrier protein of acetyl-CoA carboxylase

 Score = 38.7 bits (90), Expect = 0.001
 Identities = 23/59 (38%), Positives = 26/59 (44%), Gaps = 3/59 (5%)

Query: 64  PPPPPPVVKSAPPPPPPVAKSPPPPPPVVKSPPPPIVKPPPPNGPSPKSPPPPSVRYPP 122
           PPPP PVV   PPPP  +  + PP      S P      PPP   SP     P   +PP
Sbjct: 144 PPPPAPVVMMQPPPPHAMPPASPPAAQPAPSAPAS---SPPPTPASPPPAKAPKSSHPP 199

Length = 274

>gnl|CDD|237011 PRK11892, PRK11892, pyruvate dehydrogenase subunit beta; Provisional

 Score = 39.1 bits (92), Expect = 0.001
 Identities = 9/47 (19%), Positives = 12/47 (25%)

Query: 58  PPFVKSPPPPPPVVKSAPPPPPPVAKSPPPPPPVVKSPPPPIVKPPP 104
                +P        +AP      A     P P   + P   V   P
Sbjct: 85  SDAGAAPAAAAEAAAAAPAAAAAAAAKKAAPAPAAPAAPAAEVAADP 131

Length = 464

>gnl|CDD|237011 PRK11892, PRK11892, pyruvate dehydrogenase subunit beta; Provisional

 Score = 38.7 bits (91), Expect = 0.001
 Identities = 10/52 (19%), Positives = 13/52 (25%)

Query: 47  SSPSPKTPPPPPPFVKSPPPPPPVVKSAPPPPPPVAKSPPPPPPVVKSPPPP 98
           S+      P       +  P      +A    P  A    P   V   P  P
Sbjct: 83  SASDAGAAPAAAAEAAAAAPAAAAAAAAKKAAPAPAAPAAPAAEVAADPDIP 134

Length = 464

>gnl|CDD|215145 PLN02258, PLN02258, 9-cis-epoxycarotenoid dioxygenase NCED

 Score = 38.9 bits (91), Expect = 0.001
 Identities = 15/69 (21%), Positives = 21/69 (30%), Gaps = 4/69 (5%)

Query: 43  PPPPSSPSPKTPPPPPPFVKSPPPPPPVVKSAPPPPPPVAKSPPPPPPVVKSPPPPIVKP 102
               SS S  +   PP      P       S+    P +   P    P     PP +  P
Sbjct: 12  SHASSSSSSSSQSSPPSSTSPRPRRRKPSASSLLHTPSILPLPKLSSP----SPPSVTLP 67

Query: 103 PPPNGPSPK 111
           P     +P+
Sbjct: 68  PAATTQTPQ 76

Length = 590

>gnl|CDD|215145 PLN02258, PLN02258, 9-cis-epoxycarotenoid dioxygenase NCED

 Score = 38.9 bits (91), Expect = 0.001
 Identities = 17/73 (23%), Positives = 26/73 (35%), Gaps = 2/73 (2%)

Query: 20 LTSLACDCSNNPPPPPASKTPNCPPPPSSPSPKTPPPPPP--FVKSPPPPPPVVKSAPPP 77
           +S      +      +S + +   PPSS SP+     P    +   P   P+ K + P 
Sbjct: 1  SSSSNPTSRSQSHASSSSSSSSQSSPPSSTSPRPRRRKPSASSLLHTPSILPLPKLSSPS 60

Query: 78 PPPVAKSPPPPPP 90
          PP V   P     
Sbjct: 61 PPSVTLPPAATTQ 73

Length = 590

>gnl|CDD|184927 PRK14963, PRK14963, DNA polymerase III subunits gamma and tau; Provisional

 Score = 38.7 bits (90), Expect = 0.001
 Identities = 19/99 (19%), Positives = 29/99 (29%)

Query: 6   LASSFILLLNLGTLLTSLACDCSNNPPPPPASKTPNCPPPPSSPSPKTPPPPPPFVKSPP 65
              S  L L L  L   LA   + +      +     P   +    +          +P 
Sbjct: 323 ARRSDALSLELALLHALLALGGAPSEGVAAVAPPAPAPADLTQRLNRLEKEVRSLRSAPT 382

Query: 66  PPPPVVKSAPPPPPPVAKSPPPPPPVVKSPPPPIVKPPP 104
                  +  P   P  + PP P P   +  PP+V P  
Sbjct: 383 AAATAAGAPLPDFDPRPRGPPAPEPARSAEAPPLVAPAA 421

Length = 504

>gnl|CDD|227505 COG5178, PRP8, U5 snRNP spliceosome subunit [RNA processing and modification]

 Score = 39.2 bits (91), Expect = 0.001
 Identities = 16/30 (53%), Positives = 17/30 (56%), Gaps = 7/30 (23%)

Query: 30 NPPPPPASKTPNCPPPPSSPSPKTPPPPPP 59
          NPPPPP       PPP   P  + PPPPPP
Sbjct: 8  NPPPPP-------PPPGFEPPSQPPPPPPP 30

Length = 2365

>gnl|CDD|220603 pfam10152, DUF2360, Predicted coiled-coil domain-containing protein (DUF2360)

 Score = 37.8 bits (88), Expect = 0.001
 Identities = 20/54 (37%), Positives = 24/54 (44%)

Query: 43  PPPPSSPSPKTPPPPPPFVKSPPPPPPVVKSAPPPPPPVAKSPPPPPPVVKSPP 96
           PPP S+ +   PPPPPP       PPP    A PP  P  ++P      V   P
Sbjct: 60  PPPASAITNGGPPPPPPARAEAASPPPPEAPAEPPAEPEPEAPAENTVTVAKDP 113

This is the conserved 140 amino acid region of a family of proteins conserved from nematodes to humans. One C. elegans member is annotated as a Daf-16-dependent longevity protein 1 but this could not be confirmed. The function is unknown. Length = 147

>gnl|CDD|218332 pfam04929, Herpes_DNAp_acc, Herpes DNA replication accessory factor

 Score = 38.9 bits (91), Expect = 0.001
 Identities = 15/80 (18%), Positives = 17/80 (21%)

Query: 30  NPPPPPASKTPNCPPPPSSPSPKTPPPPPPFVKSPPPPPPVVKSAPPPPPPVAKSPPPPP 89
                P         P    S  +P PP      P    P   S    PP   + P    
Sbjct: 295 ANGVEPEPTGSVSDRPRHLSSDSSPSPPDTSDSDPSTETPPPASLSHSPPAAFERPLALS 354

Query: 90  PVVKSPPPPIVKPPPPNGPS 109
           P  K       K        
Sbjct: 355 PKRKREGDKKQKKKKSKKLK 374

Replicative DNA polymerases are capable of polymerising tens of thousands of nucleotides without dissociating from their DNA templates. The high processivity of these polymerases is dependent upon accessory proteins that bind to the catalytic subunit of the polymerase or to the substrate. The Epstein-Barr virus (EBV) BMRF1 protein is an essential component of the viral DNA polymerase and is absolutely required for lytic virus replication. BMRF1 is also a transactivator. This family is predicted to have a UL42 like structure. Length = 381

>gnl|CDD|178748 PLN03209, PLN03209, translocon at the inner envelope of chloroplast subunit 62; Provisional

 Score = 39.1 bits (91), Expect = 0.001
 Identities = 26/71 (36%), Positives = 30/71 (42%)

Query: 45  PPSSPSPKTPPPPPPFVKSPPPPPPVVKSAPPPPPPVAKSPPPPPPVVKSPPPPIVKPPP 104
           PP+SPSP  P    P V S    P V  +AP      A +PPP      SP        P
Sbjct: 449 PPTSPSPTAPTGVSPSVSSTSSVPAVPDTAPATAATDAAAPPPANMRPLSPYAVYDDLKP 508

Query: 105 PNGPSPKSPPP 115
           P  PSP +P  
Sbjct: 509 PTSPSPAAPVG 519

Length = 576

>gnl|CDD|236507 PRK09424, pntA, NAD(P) transhydrogenase subunit alpha; Provisional

 Score = 38.7 bits (91), Expect = 0.001
 Identities = 10/30 (33%), Positives = 12/30 (40%)

Query: 66  PPPPVVKSAPPPPPPVAKSPPPPPPVVKSP 95
           PPPP+  SA P     A +         SP
Sbjct: 369 PPPPIQVSAAPAAAAAAPAAKEEEKKPASP 398

Length = 509

>gnl|CDD|236090 PRK07764, PRK07764, DNA polymerase III subunits gamma and tau; Validated

 Score = 38.0 bits (89), Expect = 0.002
 Identities = 23/91 (25%), Positives = 26/91 (28%), Gaps = 2/91 (2%)

Query: 31  PPPPPASKTPNCPPPPSSPSPKTPPPPPPFVKSP--PPPPPVVKSAPPPPPPVAKSPPPP 88
           PP   A      PP  +  +    P     V  P  P  PP    AP  PPP     P  
Sbjct: 709 PPAGQADDPAAQPPQAAQGASAPSPAADDPVPLPPEPDDPPDPAGAPAQPPPPPAPAPAA 768

Query: 89  PPVVKSPPPPIVKPPPPNGPSPKSPPPPSVR 119
            P    PP P  +          S      R
Sbjct: 769 APAAAPPPSPPSEEEEMAEDDAPSMDDEDRR 799

Length = 824

>gnl|CDD|236090 PRK07764, PRK07764, DNA polymerase III subunits gamma and tau; Validated

 Score = 38.0 bits (89), Expect = 0.002
 Identities = 20/86 (23%), Positives = 23/86 (26%)

Query: 31  PPPPPASKTPNCPPPPSSPSPKTPPPPPPFVKSPPPPPPVVKSAPPPPPPVAKSPPPPPP 90
             PP          PP +    + P P      P PP P     P   P     PP P P
Sbjct: 707 ATPPAGQADDPAAQPPQAAQGASAPSPAADDPVPLPPEPDDPPDPAGAPAQPPPPPAPAP 766

Query: 91  VVKSPPPPIVKPPPPNGPSPKSPPPP 116
                  P   PP       +   P 
Sbjct: 767 AAAPAAAPPPSPPSEEEEMAEDDAPS 792

Length = 824

>gnl|CDD|237871 PRK14965, PRK14965, DNA polymerase III subunits gamma and tau; Provisional

 Score = 38.2 bits (89), Expect = 0.002
 Identities = 13/53 (24%), Positives = 16/53 (30%), Gaps = 2/53 (3%)

Query: 32  PPPPASKTPNCPPPPSSPSPKTPPPPPPFVKSPPPPPPVVKSAPPPPPPVAKS 84
            PPPA+  P   PP +   P    P P         PP   + P         
Sbjct: 399 APPPAAAPP--VPPAAPARPAAARPAPAPAPPAAAAPPARSADPAAAASAGDR 449

Length = 576

>gnl|CDD|236940 PRK11633, PRK11633, cell division protein DedD; Provisional

 Score = 38.1 bits (89), Expect = 0.002
 Identities = 28/84 (33%), Positives = 30/84 (35%), Gaps = 5/84 (5%)

Query: 31  PPPPPASKTPNCPPPPSSPSPKTPPPPPPFVKSPPPPPPVVKSAPPPPPPVAKSPPPPPP 90
           PP   A           S  P T  PP   V+  P P       PP P PV K  P P P
Sbjct: 67  PPEGAAEAVRAGDAAAPSLDPATVAPPNTPVEPEPAP-----VEPPKPKPVEKPKPKPKP 121

Query: 91  VVKSPPPPIVKPPPPNGPSPKSPP 114
             K   PP  KP P      K+ P
Sbjct: 122 QQKVEAPPAPKPEPKPVVEEKAAP 145

Length = 226

>gnl|CDD|223039 PHA03307, PHA03307, transcriptional regulator ICP4; Provisional

 Score = 38.6 bits (90), Expect = 0.002
 Identities = 18/93 (19%), Positives = 23/93 (24%)

Query: 31  PPPPPASKTPNCPPPPSSPSPKTPPPPPPFVKSPPPPPPVVKSAPPPPPPVAKSPPPPPP 90
           P P P       P     P P   PP      +              P    +     P 
Sbjct: 128 PSPAPDLSEMLRPVGSPGPPPAASPPAAGASPAAVASDAASSRQAALPLSSPEETARAPS 187

Query: 91  VVKSPPPPIVKPPPPNGPSPKSPPPPSVRYPPP 123
              + PPP   P   +   P+   P S     P
Sbjct: 188 SPPAEPPPSTPPAAASPRPPRRSSPISASASSP 220

Length = 1352

>gnl|CDD|235906 PRK07003, PRK07003, DNA polymerase III subunits gamma and tau; Validated

 Score = 38.7 bits (90), Expect = 0.002
 Identities = 13/110 (11%), Positives = 19/110 (17%), Gaps = 1/110 (0%)

Query: 24  ACDCSNNPPPPPASKTPNCPPPPSSPSPKTPPPPPPFVKSPPPPPPVVKSAPPPPPPVAK 83
           A   S  P     +        P + +            +P PP    +           
Sbjct: 390 AVGASAVPAVTAVTGAAGAALAPKAAAAAAATRAEAPPAAPAPPATADRGDDAADGDAPV 449

Query: 84  SPPPPPPVVKSPPPPIVKPPPPNGPSPKSPPPPSVRYPPPPKQQTCPIDA 133
                               PP      S P      P    +      A
Sbjct: 450 PAKANARASADSRCDERDAQPPADSGSASAPASDAP-PDAAFEPAPRAAA 498

Length = 830

>gnl|CDD|234938 PRK01297, PRK01297, ATP-dependent RNA helicase RhlB; Provisional

 Score = 38.4 bits (89), Expect = 0.002
 Identities = 15/64 (23%), Positives = 19/64 (29%), Gaps = 3/64 (4%)

Query: 50  SPKTPPPPPPFVKSPPPPPPVVKSAPPPPPPVAKSPPPPPPVVKSPPPPIVKPPPPNGPS 109
                P P P   +  P PP          P  K+  P     ++  P   KP     P 
Sbjct: 12  GEAEQPAPAPPSPAAAPAPP---PPAKTAAPATKAAAPAAAAPRAEKPKKDKPRRERKPK 68

Query: 110 PKSP 113
           P S 
Sbjct: 69  PASL 72

Length = 475

>gnl|CDD|234938 PRK01297, PRK01297, ATP-dependent RNA helicase RhlB; Provisional

 Score = 38.4 bits (89), Expect = 0.002
 Identities = 15/72 (20%), Positives = 19/72 (26%), Gaps = 5/72 (6%)

Query: 32  PPPPASKTPNCPPPPSSPSPKTPPPPPPFVKSPPPPPPVVKSAPPPPPPVAKSPPPPPPV 91
            P PA      P P ++P+P  P            P      A  P     +    P P 
Sbjct: 16  QPAPAP-----PSPAAAPAPPPPAKTAAPATKAAAPAAAAPRAEKPKKDKPRRERKPKPA 70

Query: 92  VKSPPPPIVKPP 103
                   V  P
Sbjct: 71  SLWKLEDFVVEP 82

Length = 475

>gnl|CDD|222095 pfam13388, DUF4106, Protein of unknown function (DUF4106)

 Score = 38.1 bits (88), Expect = 0.002
 Identities = 19/91 (20%), Positives = 25/91 (27%), Gaps = 8/91 (8%)

Query: 43  PPPPSSPSPKTPPPPPPFVKS-------PPPPPPVVKSAPPPPPPVAKSPPPPPPVVKSP 95
           PP P   +P  P  P  F  S        P P        P   P  ++P   P      
Sbjct: 173 PPNPPREAP-APGLPKTFTSSHGHRHRHAPKPTQQPTVQNPAQQPTVQNPAQQPQQQPQQ 231

Query: 96  PPPIVKPPPPNGPSPKSPPPPSVRYPPPPKQ 126
            P      P      + PP     +    +Q
Sbjct: 232 QPVQPAQQPTPQNPAQQPPQTEQGHKRSREQ 262

This family of proteins are found in large numbers in the Trichomonas vaginalis proteome. The function of this protein is unknown. Length = 422

>gnl|CDD|235899 PRK06975, PRK06975, bifunctional uroporphyrinogen-III synthetase/uroporphyrin-III C-methyltransferase; Reviewed

 Score = 38.2 bits (89), Expect = 0.002
 Identities = 12/50 (24%), Positives = 14/50 (28%)

Query: 31  PPPPPASKTPNCPPPPSSPSPKTPPPPPPFVKSPPPPPPVVKSAPPPPPP 80
            P   A           S S  + P       +PPP PP     PP    
Sbjct: 271 QPATAAPAPSRMTDTNDSKSVTSQPAAAAAAPAPPPNPPATPPEPPARRG 320

Length = 656

>gnl|CDD|200219 TIGR02927, SucB_Actino, 2-oxoglutarate dehydrogenase, E2 component, dihydrolipoamide succinyltransferase

 Score = 38.5 bits (89), Expect = 0.002
 Identities = 13/58 (22%), Positives = 18/58 (31%)

Query: 31  PPPPPASKTPNCPPPPSSPSPKTPPPPPPFVKSPPPPPPVVKSAPPPPPPVAKSPPPP 88
            P    +  P+      +P P    P        P P P   +AP    PV+     P
Sbjct: 209 EPAEEEAPAPSEAGSEPAPDPAARAPHAAPDPPAPAPAPAKTAAPAAAAPVSSGDSGP 266

This model represents an Actinobacterial clade of E2 enzyme, a component of the 2-oxoglutarate dehydrogenase complex involved in the TCA cycle. These proteins have multiple domains including the catalytic domain (pfam00198), one or two biotin domains (pfam00364) and an E3-component binding domain (pfam02817). Length = 579

>gnl|CDD|237011 PRK11892, PRK11892, pyruvate dehydrogenase subunit beta; Provisional

 Score = 38.0 bits (89), Expect = 0.002
 Identities = 9/47 (19%), Positives = 15/47 (31%)

Query: 32  PPPPASKTPNCPPPPSSPSPKTPPPPPPFVKSPPPPPPVVKSAPPPP 78
              PA+        P++ +        P   +P  P   V + P  P
Sbjct: 88  GAAPAAAAEAAAAAPAAAAAAAAKKAAPAPAAPAAPAAEVAADPDIP 134

Length = 464

>gnl|CDD|184927 PRK14963, PRK14963, DNA polymerase III subunits gamma and tau; Provisional

 Score = 37.9 bits (88), Expect = 0.002
 Identities = 18/82 (21%), Positives = 19/82 (23%), Gaps = 8/82 (9%)

Query: 22  SLACDCSNNPPPPPASKT----PNCPPPPSSPSPKTPPPPPPFVKSPPPPPPVVKSAPPP 77
           S        P P PA  T           S  S  T            P P        P
Sbjct: 347 SEGVAAVAPPAPAPADLTQRLNRLEKEVRSLRSAPTAAATAA----GAPLPDFDPRPRGP 402

Query: 78  PPPVAKSPPPPPPVVKSPPPPI 99
           P P        PP+V     P 
Sbjct: 403 PAPEPARSAEAPPLVAPAAAPA 424

Length = 504

>gnl|CDD|227505 COG5178, PRP8, U5 snRNP spliceosome subunit [RNA processing and modification]

 Score = 38.4 bits (89), Expect = 0.002
 Identities = 17/34 (50%), Positives = 18/34 (52%), Gaps = 5/34 (14%)

Query: 47 SSPSPKTPPPPPPFVKSPPPPPPVVKSAPPPPPP 80
          +S  P  PPPPPP     PP  P     PPPPPP
Sbjct: 2  ASLPPGNPPPPPPPPGFEPPSQP-----PPPPPP 30

Length = 2365

>gnl|CDD|236768 PRK10819, PRK10819, transport protein TonB; Provisional

 Score = 38.1 bits (89), Expect = 0.002
 Identities = 26/91 (28%), Positives = 32/91 (35%)

Query: 34  PPASKTPNCPPPPSSPSPKTPPPPPPFVKSPPPPPPVVKSAPPPPPPVAKSPPPPPPVVK 93
           P   + P    PP  P  +  P P P  + P   P V+    P P P  K  P P   V+
Sbjct: 55  PADLEPPQAVQPPPEPVVEPEPEPEPIPEPPKEAPVVIPKPEPKPKPKPKPKPKPVKKVE 114

Query: 94  SPPPPIVKPPPPNGPSPKSPPPPSVRYPPPP 124
             P   VKP  P   SP     P+       
Sbjct: 115 EQPKREVKPVEPRPASPFENTAPARPTSSTA 145

Length = 246

>gnl|CDD|223065 PHA03378, PHA03378, EBNA-3B; Provisional

 Score = 38.5 bits (89), Expect = 0.002
 Identities = 26/95 (27%), Positives = 34/95 (35%), Gaps = 1/95 (1%)

Query: 33  PPPASKTPNCPPPPSSPSPKTPPPPPPFVKSPPPPPPVVKSAPPPPPPVAKSPPPPPPVV 92
           PPP + TP   PP + P     P        PP   P     P   P  A+ P   P   
Sbjct: 696 PPPRAPTP-MRPPAAPPGRAQRPAAATGRARPPAAAPGRARPPAAAPGRARPPAAAPGRA 754

Query: 93  KSPPPPIVKPPPPNGPSPKSPPPPSVRYPPPPKQQ 127
           + P     +  PP        P P  + PP P+Q+
Sbjct: 755 RPPAAAPGRARPPAAAPGAPTPQPPPQAPPAPQQR 789

Length = 991

>gnl|CDD|233045 TIGR00601, rad23, UV excision repair protein Rad23

 Score = 38.3 bits (89), Expect = 0.002
 Identities = 22/79 (27%), Positives = 26/79 (32%), Gaps = 11/79 (13%)

Query: 34  PPASKTPNCPPPPSSPSPKTPPPPPPFVKSPPPPPPVVKSAPPPPPPVAKSPPPPPPVVK 93
           P        PP  +  S  TP P      SPP  P    SA P      KSP       +
Sbjct: 77  PKTGTGKVAPPAATPTSAPTPTP------SPPASPASGMSAAPASAVEEKSPSE-----E 125

Query: 94  SPPPPIVKPPPPNGPSPKS 112
           S      + P  + PS  S
Sbjct: 126 SATATAPESPSTSVPSSGS 144

All proteins in this family for which functions are known are components of a multiprotein complex used for targeting nucleotide excision repair to specific parts of the genome. In humans, Rad23 complexes with the XPC protein. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University) [DNA metabolism, DNA replication, recombination, and repair]. Length = 378

>gnl|CDD|166942 PRK00404, tatB, sec-independent translocase; Provisional

 Score = 36.7 bits (85), Expect = 0.002
 Identities = 24/59 (40%), Positives = 27/59 (45%)

Query: 30  NPPPPPASKTPNCPPPPSSPSPKTPPPPPPFVKSPPPPPPVVKSAPPPPPPVAKSPPPP 88
            P  PPA   P  PP   SP+P  P PPP    + PP P     AP   PP +  P PP
Sbjct: 80  APLTPPAPPEPVTPPTAQSPAPAVPTPPPTSTPAVPPAPAAAVPAPAAAPPPSDPPQPP 138

Length = 141

>gnl|CDD|227665 COG5373, COG5373, Predicted membrane protein [Function unknown]

 Score = 38.3 bits (89), Expect = 0.002
 Identities = 19/74 (25%), Positives = 26/74 (35%), Gaps = 5/74 (6%)

Query: 31  PPPPPASKTPNCPPPPSSP-SPKTPPPPPPFVKSPPPPPPVVKSAPPPPPPV-AKSPPPP 88
              P A++    P    S  SP+ PPP PP   +P        +  P   P  + +P P 
Sbjct: 54  MAAPEAAEAAPLPAAAESIASPEVPPPVPP---APAQEGEAPAAEQPSAVPAPSAAPAPA 110

Query: 89  PPVVKSPPPPIVKP 102
            PV  S        
Sbjct: 111 EPVEPSLAANPFAA 124

Length = 931

>gnl|CDD|236776 PRK10856, PRK10856, cytoskeletal protein RodZ; Provisional

 Score = 37.7 bits (88), Expect = 0.002
 Identities = 11/71 (15%), Positives = 19/71 (26%)

Query: 47  SSPSPKTPPPPPPFVKSPPPPPPVVKSAPPPPPPVAKSPPPPPPVVKSPPPPIVKPPPPN 106
           ++    TP P  P   +P        +  P P    +      P   +        P   
Sbjct: 169 TTDPATTPAPAAPVDTTPTNSQTPAVATAPAPAVDPQQNAVVAPSQANVDTAATPAPAAP 228

Query: 107 GPSPKSPPPPS 117
                + P P+
Sbjct: 229 ATPDGAAPLPT 239

Length = 331

>gnl|CDD|236090 PRK07764, PRK07764, DNA polymerase III subunits gamma and tau; Validated

 Score = 37.7 bits (88), Expect = 0.003
 Identities = 13/83 (15%), Positives = 17/83 (20%)

Query: 44  PPPSSPSPKTPPPPPPFVKSPPPPPPVVKSAPPPPPPVAKSPPPPPPVVKSPPPPIVKPP 103
                P+P +  PP    +   P  P   +AP P    A               P   P 
Sbjct: 596 GGEGPPAPASSGPPEEAARPAAPAAPAAPAAPAPAGAAAAPAEASAAPAPGVAAPEHHPK 655

Query: 104 PPNGPSPKSPPPPSVRYPPPPKQ 126
               P                  
Sbjct: 656 HVAVPDASDGGDGWPAKAGGAAP 678

Length = 824

>gnl|CDD|223039 PHA03307, PHA03307, transcriptional regulator ICP4; Provisional

 Score = 38.2 bits (89), Expect = 0.003
 Identities = 27/104 (25%), Positives = 37/104 (35%), Gaps = 2/104 (1%)

Query: 21  TSLACDCSNNPPPPPASKTPNCPPPPSSPSPKTPPPPPPFVKSPPPPPPVVKSAPPPPPP 80
           T +A   + +   PP    P       +   ++ P       +P  P    + +P PP P
Sbjct: 54  TVVAGAAACDRFEPPTGPPPGPGTEAPANESRSTPTWSLSTLAPASPAR--EGSPTPPGP 111

Query: 81  VAKSPPPPPPVVKSPPPPIVKPPPPNGPSPKSPPPPSVRYPPPP 124
            +  PPPP P   SPPP              SP PP    PP  
Sbjct: 112 SSPDPPPPTPPPASPPPSPAPDLSEMLRPVGSPGPPPAASPPAA 155

Length = 1352

>gnl|CDD|223039 PHA03307, PHA03307, transcriptional regulator ICP4; Provisional

 Score = 37.8 bits (88), Expect = 0.003
 Identities = 24/104 (23%), Positives = 30/104 (28%), Gaps = 4/104 (3%)

Query: 31  PPPPPASKTPNCPPPPSSPSPKTPPPPPPFVKSPPPPPPVVKSAPPPPPPVAKSPPPPPP 90
           P     +      P  S  +     P      +PP P       PPPP P   SPPP P 
Sbjct: 75  PGTEAPANESRSTPTWSLSTLAPASPAREGSPTPPGPSS---PDPPPPTPPPASPPPSPA 131

Query: 91  VVKSPPPPIVKPPPPNGPSPKSPPPPSVRYPPPPKQQTCPIDAL 134
              S     V  P P   +   P   +          +    AL
Sbjct: 132 PDLSEMLRPVGSPGPPPAAS-PPAAGASPAAVASDAASSRQAAL 174

Length = 1352

>gnl|CDD|237940 PRK15313, PRK15313, autotransport protein MisL; Provisional

 Score = 37.9 bits (87), Expect = 0.003
 Identities = 23/68 (33%), Positives = 25/68 (36%)

Query: 64  PPPPPPVVKSAPPPPPPVAKSPPPPPPVVKSPPPPIVKPPPPNGPSPKSPPPPSVRYPPP 123
           P  P PV    P P  P    P P  PV+  P  P    P P  P P  P  P    P  
Sbjct: 563 PIIPDPVDPVIPDPVIPDPVDPDPVDPVIPDPVIPDPVDPDPVDPEPVDPVIPDPTIPDI 622

Query: 124 PKQQTCPI 131
            +  T PI
Sbjct: 623 GQSDTPPI 630

Length = 955

>gnl|CDD|235899 PRK06975, PRK06975, bifunctional uroporphyrinogen-III synthetase/uroporphyrin-III C-methyltransferase; Reviewed

 Score = 37.8 bits (88), Expect = 0.003
 Identities = 15/57 (26%), Positives = 18/57 (31%), Gaps = 4/57 (7%)

Query: 51  PKTPPPPPPFVKSPPPPPPVVKSAPPPPPPVAKSPPPPPPVVKSPPPPIVKPPPPNG 107
               P       S        KS    P   A +P PPP    +PP    +PP   G
Sbjct: 268 AAAQPATAAPAPSRMTDTNDSKSVTSQPAAAAAAPAPPP----NPPATPPEPPARRG 320

Length = 656

>gnl|CDD|219321 pfam07174, FAP, Fibronectin-attachment protein (FAP)

 Score = 37.6 bits (87), Expect = 0.003
 Identities = 27/60 (45%), Positives = 30/60 (50%)

Query: 31  PPPPPASKTPNCPPPPSSPSPKTPPPPPPFVKSPPPPPPVVKSAPPPPPPVAKSPPPPPP 90
           PPP  A+  P    PP  P P  PP P P   +  PPPP      PPPPPV  + PPPP 
Sbjct: 46  PPPSTAAAAPAPAAPPPPPPPAAPPAPQPDDPNAAPPPPPADPNAPPPPPVDPNAPPPPA 105

This family contains bacterial fibronectin-attachment proteins (FAP). Family members are rich in alanine and proline, are approximately 300 long, and seem to be restricted to mycobacteria. These proteins contain a fibronectin-binding motif that allows mycobacteria to bind to fibronectin in the extracellular matrix. Length = 297

>gnl|CDD|223880 COG0810, TonB, Periplasmic protein TonB, links inner and outer membranes [Cell envelope biogenesis, outer membrane]

 Score = 37.1 bits (86), Expect = 0.003
 Identities = 23/78 (29%), Positives = 27/78 (34%), Gaps = 3/78 (3%)

Query: 51  PKTPPPPPPFVKSPPPPPPVVKSAPPPPPPVAKSPPPPPPVVKSPPPPIVKPPPPNGPSP 110
                  P     P P PP      P PP   ++PP P P      P   K P    P P
Sbjct: 45  AAKVLEAPTEEPQPEPEPPEE---QPKPPTEPETPPEPTPPKPKEKPKPEKKPKKPKPKP 101

Query: 111 KSPPPPSVRYPPPPKQQT 128
           K  P P  +  P PK + 
Sbjct: 102 KPKPKPKPKVKPQPKPKK 119

Length = 244

>gnl|CDD|200219 TIGR02927, SucB_Actino, 2-oxoglutarate dehydrogenase, E2 component, dihydrolipoamide succinyltransferase

 Score = 37.7 bits (87), Expect = 0.003
 Identities = 20/78 (25%), Positives = 24/78 (30%), Gaps = 10/78 (12%)

Query: 26  DCSNNPPPPPASKTPNCPPPPSSPSPKTPPPPPPFVKSPPPPPPVVKSAPPPPPPVAKSP 85
           D +  P  P   +     P PS    +  P P        P PP      P P P   + 
Sbjct: 202 DANAAPAEPAEEE----APAPSEAGSEPAPDPAARAPHAAPDPP-----APAPAPAKTAA 252

Query: 86  PP-PPPVVKSPPPPIVKP 102
           P    PV      P V P
Sbjct: 253 PAAAAPVSSGDSGPYVTP 270

This model represents an Actinobacterial clade of E2 enzyme, a component of the 2-oxoglutarate dehydrogenase complex involved in the TCA cycle. These proteins have multiple domains including the catalytic domain (pfam00198), one or two biotin domains (pfam00364) and an E3-component binding domain (pfam02817). Length = 579

>gnl|CDD|227665 COG5373, COG5373, Predicted membrane protein [Function unknown]

 Score = 37.9 bits (88), Expect = 0.003
 Identities = 20/78 (25%), Positives = 30/78 (38%), Gaps = 1/78 (1%)

Query: 45  PPSSPSPKTPPPPPPFVKSPPPPPPVVKSAPPPPPPVAKSPPPPPPVVKSPPPPIVKPPP 104
            P + + +    P     +P P      ++P  PPPV  +P        +  P  V P P
Sbjct: 45  GPVAKAAEQMAAPEAAEAAPLPAAAESIASPEVPPPVPPAPAQEGEAPAAEQPSAV-PAP 103

Query: 105 PNGPSPKSPPPPSVRYPP 122
              P+P  P  PS+   P
Sbjct: 104 SAAPAPAEPVEPSLAANP 121

Length = 931

>gnl|CDD|184923 PRK14959, PRK14959, DNA polymerase III subunits gamma and tau; Provisional

 Score = 38.1 bits (88), Expect = 0.003
 Identities = 25/96 (26%), Positives = 39/96 (40%), Gaps = 4/96 (4%)

Query: 33  PPPASKTPNCPPPPSSPSPKTPPPPPPFVKSPPPPPPVVKSAPPPPPPVAKSPPPPPPVV 92
           P P ++ P    P +  +P +  P  P   + P P      APP PP     P P P + 
Sbjct: 398 PTPGTQGPQGTAPAAGMTPSSAAPATPAPSAAPSPRVPWDDAPPAPPRSGIPPRPAPRMP 457

Query: 93  KSPPPPIVKPPPPNGPSPKSPPPPSVRYPPPPKQQT 128
           ++ P     P  P+  +  S  PP++  P    + T
Sbjct: 458 EASP----VPGAPDSVASASDAPPTLGDPSDTAEHT 489

Length = 624

>gnl|CDD|215412 PLN02769, PLN02769, Probable galacturonosyltransferase

 Score = 37.8 bits (88), Expect = 0.003
 Identities = 13/80 (16%), Positives = 18/80 (22%), Gaps = 9/80 (11%)

Query: 29  NNPPPPPASKTPNCPPPPSSPSPKTPPPPPPFVKSPP-----PPPPVVKSAPPPPPPVAK 83
           N         +             +  P    + S        P P +   P  P     
Sbjct: 71  NGTKKTQNQVSEGVDEILKESGLTSSKPSDIVISSRSKLKKVFPDPKLNPLPVKP----H 126

Query: 84  SPPPPPPVVKSPPPPIVKPP 103
           S P P    K+    I K  
Sbjct: 127 SVPVPSSDTKNKSTAIDKEN 146

Length = 629

>gnl|CDD|130706 TIGR01645, half-pint, poly-U binding splicing factor, half-pint family

 Score = 37.7 bits (87), Expect = 0.003
 Identities = 30/113 (26%), Positives = 39/113 (34%), Gaps = 4/113 (3%)

Query: 49  PSPKTPPPPPPFVKSPPPPPPVVKSAPPPPPPVAKSPPPPPPVVKSPPPPIVKPPPPNG- 107
           P  ++P  P   + +      VV SA      V   P   P VVK  P  I  P PP G 
Sbjct: 326 PRAQSPATPSSSLPTDIGNKAVVSSAKKEAEEVPPLPQAAPAVVKPGPMEIPTPVPPPGL 385

Query: 108 PSPKSPPPPSVRYP--PPPKQQTCPIDALKLGACVDVLGGLIH-IGLGDSAKE 157
             P    PP +  P    P     P   +K        G L   +   + +KE
Sbjct: 386 AIPSLVAPPGLVAPTEINPSFLASPRKKMKREKLPVTFGALDDTLAWKEPSKE 438

The proteins represented by this model contain three RNA recognition motifs (rrm: pfam00076) and have been characterized as poly-pyrimidine tract binding proteins associated with RNA splicing factors. In the case of PUF60 (GP|6176532), in complex with p54, and in the presence of U2AF, facilitates association of U2 snRNP with pre-mRNA. Length = 612

>gnl|CDD|237057 PRK12323, PRK12323, DNA polymerase III subunits gamma and tau; Provisional

 Score = 37.5 bits (87), Expect = 0.004
 Identities = 22/98 (22%), Positives = 33/98 (33%), Gaps = 8/98 (8%)

Query: 32  PPPPASKTPNCPPP-------PSSPSPKTPPPPPPFVKSPPPPPPVVKSAPPPPPPVAKS 84
           P    +   + PPP        +SP+P  P   P    +   P P           +A +
Sbjct: 485 PAAAPAPADDDPPPWEELPPEFASPAPAQPDAAPAGWVAESIPDPATADPDDAFETLAPA 544

Query: 85  PPPPP-PVVKSPPPPIVKPPPPNGPSPKSPPPPSVRYP 121
           P   P P   +   P+V P PP   +   P      +P
Sbjct: 545 PAAAPAPRAAAATEPVVAPRPPRASASGLPDMFDGDWP 582

Length = 700

>gnl|CDD|237874 PRK14971, PRK14971, DNA polymerase III subunits gamma and tau; Provisional

 Score = 37.4 bits (87), Expect = 0.004
 Identities = 20/96 (20%), Positives = 30/96 (31%), Gaps = 13/96 (13%)

Query: 44  PPPSSPSPKTPPPPPPFVKSPPPPPPVVKSAPPPPPPVAKSPPPPPPVVKSP-PPPIVKP 102
                P        P F +    P P   +A  P P  + +   P          P   P
Sbjct: 370 SGGRGPKQ---HIKPVFTQPAAAPQPSAAAAASPSPSQSSAAAQPS--APQSATQPAGTP 424

Query: 103 PP----PNGPSPKSPP---PPSVRYPPPPKQQTCPI 131
           P     P    P +PP   P +VR     +++  P+
Sbjct: 425 PTVSVDPPAAVPVNPPSTAPQAVRPAQFKEEKKIPV 460

Length = 614

>gnl|CDD|236138 PRK07994, PRK07994, DNA polymerase III subunits gamma and tau; Validated

 Score = 37.5 bits (88), Expect = 0.004
 Identities = 14/100 (14%), Positives = 20/100 (20%), Gaps = 3/100 (3%)

Query: 31  PPPPPASKTPNCPPPPSSPSPKTPP--PPPPFVKSPPPPPPVVKSAPPPPPPVAKSPPPP 88
              P  +     P   S                K+    P     A P    + +     
Sbjct: 404 ASAPQQAPAVPLPETTSQLLAARQQLQRAQGATKAKKSEPAAASRARPVNSALERLASVR 463

Query: 89  PPVVKSPPPPIVKPPPPNGPS-PKSPPPPSVRYPPPPKQQ 127
           P        P  K       + P       V  P   K+ 
Sbjct: 464 PAPSALEKAPAKKEAYRWKATNPVEVKKEPVATPKALKKA 503

Length = 647

>gnl|CDD|235906 PRK07003, PRK07003, DNA polymerase III subunits gamma and tau; Validated

 Score = 37.5 bits (87), Expect = 0.004
 Identities = 15/96 (15%), Positives = 24/96 (25%), Gaps = 5/96 (5%)

Query: 28  SNNPPPPPASKTPNCPPPPSSPSPKTPPPPPPFVKSPPPPPPVVKSAPPPPPPVAKSPPP 87
           +N      +        PP+     + P         PP      +     P  A     
Sbjct: 453 ANARASADSRCDERDAQPPADSGSASAPAS-----DAPPDAAFEPAPRAAAPSAATPAAV 507

Query: 88  PPPVVKSPPPPIVKPPPPNGPSPKSPPPPSVRYPPP 123
           P     +       P     P+P++ PP      P 
Sbjct: 508 PDARAPAAASREDAPAAAAPPAPEARPPTPAAAAPA 543

Length = 830

>gnl|CDD|223880 COG0810, TonB, Periplasmic protein TonB, links inner and outer membranes [Cell envelope biogenesis, outer membrane]

 Score = 36.7 bits (85), Expect = 0.004
 Identities = 23/85 (27%), Positives = 26/85 (30%)

Query: 43  PPPPSSPSPKTPPPPPPFVKSPPPPPPVVKSAPPPPPPVAKSPPPPPPVVKSPPPPIVKP 102
             P   P P+  PP         P  P   + P P         P  P  K  P P  KP
Sbjct: 50  EAPTEEPQPEPEPPEEQPKPPTEPETPPEPTPPKPKEKPKPEKKPKKPKPKPKPKPKPKP 109

Query: 103 PPPNGPSPKSPPPPSVRYPPPPKQQ 127
                P PK PP  +    P    Q
Sbjct: 110 KVKPQPKPKKPPSKTAAKAPAAPNQ 134

Length = 244

>gnl|CDD|215145 PLN02258, PLN02258, 9-cis-epoxycarotenoid dioxygenase NCED

 Score = 37.4 bits (87), Expect = 0.004
 Identities = 14/75 (18%), Positives = 23/75 (30%)

Query: 11 ILLLNLGTLLTSLACDCSNNPPPPPASKTPNCPPPPSSPSPKTPPPPPPFVKSPPPPPPV 70
              N  +   S A   S++        + +  P    PS  +    P  +  P    P 
Sbjct: 1  SSSSNPTSRSQSHASSSSSSSSQSSPPSSTSPRPRRRKPSASSLLHTPSILPLPKLSSPS 60

Query: 71 VKSAPPPPPPVAKSP 85
            S   PP    ++P
Sbjct: 61 PPSVTLPPAATTQTP 75

Length = 590

>gnl|CDD|237000 PRK11855, PRK11855, dihydrolipoamide acetyltransferase; Reviewed

 Score = 37.1 bits (87), Expect = 0.004
 Identities = 11/59 (18%), Positives = 17/59 (28%)

Query: 61  VKSPPPPPPVVKSAPPPPPPVAKSPPPPPPVVKSPPPPIVKPPPPNGPSPKSPPPPSVR 119
           ++     P    +     P  A +  P P    +  P    P     P       P+VR
Sbjct: 192 IEVAAAAPAAAAAPAAAAPAAAAAAAPAPAPAAAAAPAAAAPAAAAAPGKAPHASPAVR 250

Length = 547

>gnl|CDD|216263 pfam01044, Vinculin, Vinculin family

 Score = 37.4 bits (87), Expect = 0.004
 Identities = 19/53 (35%), Positives = 20/53 (37%), Gaps = 12/53 (22%)

Query: 53  TPPPPPPFVKSPPPPPPVVKS-------APP-PPPPVAKSPPPPPPVVKSPPP 97
            P      +   PP  P           A P PPPPV   PPP PP    PPP
Sbjct: 606 RPIRQAVLMNRSPPELPTDSEFEREDEPADPRPPPPVETEPPPRPP----PPP 654

Length = 850

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	214
PF14547	85	Hydrophob_seed: Hydrophobic seed protein	100.0
cd01958	85	HPS_like HPS_like: Hydrophobic Protein from Soybea	100.0
smart00499	79	AAI Plant lipid transfer protein / seed storage pr	97.22
cd04660	73	nsLTP_like nsLTP_like: Non-specific lipid-transfer	96.76
PF14368	96	LTP_2: Probable lipid transfer; PDB: 2RKN_A 1N89_A	96.36
cd00010	63	AAI_LTSS AAI_LTSS: Alpha-Amylase Inhibitors (AAI),	95.78
cd01959	66	nsLTP2 nsLTP2: Non-specific lipid-transfer protein	95.72
PF00234	90	Tryp_alpha_amyl: Protease inhibitor/seed storage/L	95.1
PF04554	58	Extensin_2: Extensin-like region; InterPro: IPR006	93.48
cd01960	89	nsLTP1 nsLTP1: Non-specific lipid-transfer protein	92.48
PF04554	58	Extensin_2: Extensin-like region; InterPro: IPR006	90.43

>PF14547 Hydrophob_seed: Hydrophobic seed protein

Probab=100.00  E-value=1.3e-35  Score=225.43  Aligned_cols=85  Identities=58%  Similarity=1.189  Sum_probs=83.2

Q ss_pred             CCCccccCccccccccccccccccCCCCCCCCchhhhccccccchhhhhHHHhhhhccccccccchhhHHHhhhcCCCCC
Q 028062          128 TCPIDALKLGACVDVLGGLIHIGLGDSAKEKCCPLLQGLADLDAAVCLCTAIRLKALNLINLLVPISLQVLVNDCGKYPP  207 (214)
Q Consensus       128 tCP~DaLKLgvCanVLgGLv~~~lG~P~~~pCCpLI~GLaDldAAvCLCtAIKAnVLGlInlniPi~L~lLLN~CGK~~P  207 (214)
                      +||+|++|||+|+||| ||+++.+|.+.+++||++|+||+|+|||+|||+|+|+|+||+||+|+|+++++|+|.|||++|
T Consensus         1 ~CP~d~lkLgvC~~vL-~l~~~~~g~~~~~~CC~li~gL~d~~AA~CLC~aika~vlg~i~~~ipv~l~~lln~CGk~~p   79 (85)
T PF14547_consen    1 TCPRDALKLGVCANVL-GLVNLVIGNPPRQPCCSLIAGLADLDAAVCLCTAIKANVLGLINVNIPVALNLLLNACGKTVP   79 (85)
T ss_pred             CCCCcchhhhhhhhhh-hhhccccCCCCCCCcChHHhCcccchHHHHHHHHHhhhcccccccccccHHHHHHHHhCCcCc
Confidence            6999999999999999 799999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCcCC
Q 028062          208 AGFQCP  213 (214)
Q Consensus       208 ~GF~C~  213 (214)
                      +||+|+
T Consensus        80 ~gf~C~   85 (85)
T PF14547_consen   80 SGFTCP   85 (85)
T ss_pred             CCCcCC
Confidence            999996

>cd01958 HPS_like HPS_like: Hydrophobic Protein from Soybean (HPS)-like subfamily; composed of proteins with similarity to HPS, a small hydrophobic protein with unknown function related to cereal-type alpha-amylase inhibitors and lipid transfer proteins

Probab=100.00  E-value=8.6e-36  Score=227.04  Aligned_cols=84  Identities=57%  Similarity=1.119  Sum_probs=81.7

Q ss_pred             CCCCccccCccccccccccccccccCCCCCCCCchhhhccccccchhhhhHHHhhhhccccccccchhhHHHhhhcCCCC
Q 028062          127 QTCPIDALKLGACVDVLGGLIHIGLGDSAKEKCCPLLQGLADLDAAVCLCTAIRLKALNLINLLVPISLQVLVNDCGKYP  206 (214)
Q Consensus       127 ~tCP~DaLKLgvCanVLgGLv~~~lG~P~~~pCCpLI~GLaDldAAvCLCtAIKAnVLGlInlniPi~L~lLLN~CGK~~  206 (214)
                      ++||||++|||+|+|||| ++++.+|++.+++||++|+||+|+|||+|||||||+|+|| ||+|+|++|++|+|.|||++
T Consensus         2 ~~CP~dalkLgvCanvL~-l~~~~~g~~~~~~CC~ll~GL~dldAA~CLCtaikan~lg-i~~~~pv~l~llln~CGk~~   79 (85)
T cd01958           2 PTCPRDALKLGVCANVLG-LSLLLLGTPAVQPCCPLIGGLADLDAAVCLCTAIKANILG-ISINIPVALSLLLNSCGRNV   79 (85)
T ss_pred             CCCCcchHHhchhHhhhh-ccccccCCCccchHHHHHcCchhhheeeeeeeeeeccccC-cccccChhHHHHHHHHcCcC
Confidence            689999999999999995 8888899999999999999999999999999999999999 99999999999999999999


Q ss_pred             CCCCcC
Q 028062          207 PAGFQC  212 (214)
Q Consensus       207 P~GF~C  212 (214)
                      |+||+|
T Consensus        80 P~gf~C   85 (85)
T cd01958          80 PPGFTC   85 (85)
T ss_pred             CCCCcC
Confidence            999998

In addition to HPS, members of this subfamily include a hybrid proline-rich protein (HyPRP) from maize, a dark-inducible protein (LeDI-2) from Lithospermum erythrorhizon, maize ZRP3 protein, and rice RcC3 protein. HyPRP is an embryo-specific protein that contains an N-terminal proline-rich domain and a C-terminal HPS-like cysteine-rich domain. It has been suggested that HyPRP may be involved in the stability and defense of the developing embryo. LeDI-2 is a root-specific protein that may be involved in regulating the biosynthesis of shikonin derivatives in L. erythrorhizon. Maize ZRP3 and rice RcC3 are root-specific proteins whose functions are yet to be determined. It has been reported that ZRP3 largely accumulates in a distinct subset

>smart00499 AAI Plant lipid transfer protein / seed storage protein / trypsin-alpha amylase inhibitor domain family

Probab=97.22  E-value=0.00013  Score=49.81  Aligned_cols=76  Identities=32%  Similarity=0.664  Sum_probs=50.9

Q ss_pred             CCccccCccccccccccccccccCCCCCCCCchhhhccccccchhhhhHHHhhhhccccc---cccchhhHHHhhhcCCC
Q 028062          129 CPIDALKLGACVDVLGGLIHIGLGDSAKEKCCPLLQGLADLDAAVCLCTAIRLKALNLIN---LLVPISLQVLVNDCGKY  205 (214)
Q Consensus       129 CP~DaLKLgvCanVLgGLv~~~lG~P~~~pCCpLI~GLaDldAAvCLCtAIKAnVLGlIn---lniPi~L~lLLN~CGK~  205 (214)
                      |.....++..|.+.+.+..   ......+.||..++++.   .+.|+|.+++..+.+.+.   ++. .....|.+.||..
T Consensus         1 C~~~~~~~~~c~~~~~~~~---~~~~p~~~CC~~l~~~~---~~~C~C~~~~~~~~~~~~~~~~~~-~~a~~lp~~C~~~   73 (79)
T smart00499        1 CGQVLLQLAPCLSYLTGGS---PGAPPSQQCCSQLRGLN---SAQCRCLALRAAVLGILEIPGVNA-QNAASLPSACGVP   73 (79)
T ss_pred             ChhhhhhHHhhHHHHcCCC---CCCCCchHHHHHHHHhc---ccCCcchhhhcccccccchhhhhH-HHHHhhHHhcCCC
Confidence            3344456667877664211   12346688999999987   778999999988777221   233 3555677899998


Q ss_pred             CCCCCcC
Q 028062          206 PPAGFQC  212 (214)
Q Consensus       206 ~P~GF~C  212 (214)
                      .+. +.|
T Consensus        74 ~~~-~~C   79 (79)
T smart00499       74 PPY-TDC   79 (79)
T ss_pred             CCC-CCC
Confidence            775 555

>cd04660 nsLTP_like nsLTP_like: Non-specific lipid-transfer protein (nsLTP)-like subfamily; composed of predominantly uncharacterized proteins with similarity to nsLTPs, including Medicago truncatula MtN5, the root-specific Phaseolus vulgaris PVR3, Antirrhinum majus FIL1, and Lilium longiflorum LIM3

Probab=96.76  E-value=0.00028  Score=51.13  Aligned_cols=70  Identities=24%  Similarity=0.411  Sum_probs=47.1

Q ss_pred             cccCccccccccccccccccCCCCCCCCchhhhccccccchhhhhHHHhhhhccccccccchhhHHHhhhcCCCCCCCCc
Q 028062          132 DALKLGACVDVLGGLIHIGLGDSAKEKCCPLLQGLADLDAAVCLCTAIRLKALNLINLLVPISLQVLVNDCGKYPPAGFQ  211 (214)
Q Consensus       132 DaLKLgvCanVLgGLv~~~lG~P~~~pCCpLI~GLaDldAAvCLCtAIKAnVLGlInlniPi~L~lLLN~CGK~~P~GF~  211 (214)
                      |...|..|...+.|   -.-...+.+.||+-|+++   |. .|+|..++++.+..  ||... ...|.+.||..++. |+
T Consensus         4 ~~~~L~~C~~yl~~---~~~~~~Ps~~CC~~vk~~---~~-~C~C~~~~~~~~~~--i~~~~-a~~Lp~~Cgv~~p~-~~   72 (73)
T cd04660           4 DLDLLAECQPYVTG---PNPPPPPSRECCAALRRA---DL-PCLCRYKTSLVLQI--IDPDK-AVYLPAKCGLPLPP-SS   72 (73)
T ss_pred             CHHHHHHHHHHHcC---CCCCCCCCHHHHHHHHcC---Cc-CCEeeccCCCcccc--cCHHH-HHHHHHHcCCCCCC-CC
Confidence            44567788776632   000123567799999974   32 39999998876653  44433 44677899999999 98


Q ss_pred             C
Q 028062          212 C  212 (214)
Q Consensus       212 C  212 (214)
                      |
T Consensus        73 C   73 (73)
T cd04660          73 C   73 (73)
T ss_pred             C
Confidence            8

Plant nsLTPs are small, soluble proteins that facilitate the transfer of fatty acids, phospholipids, glycolipids, and steroids between membranes. The MtN5 gene is induced during root nodule development. FIL1 is thought to be important in petal and stamen formation. The LIM3 gene is induced during the early prophase stage of meiosis in lily microsporocytes.

>PF14368 LTP_2: Probable lipid transfer; PDB: 2RKN_A 1N89_A 1TUK_A

Probab=96.36  E-value=0.0004  Score=50.58  Aligned_cols=57  Identities=25%  Similarity=0.581  Sum_probs=34.4

Q ss_pred             CCCCCCCCchhhhccccccchhhhhHHHhhhh-ccccccccchhhHHHhhhcCCCCCCCCcC
Q 028062          152 GDSAKEKCCPLLQGLADLDAAVCLCTAIRLKA-LNLINLLVPISLQVLVNDCGKYPPAGFQC  212 (214)
Q Consensus       152 G~P~~~pCCpLI~GLaDldAAvCLCtAIKAnV-LGlInlniPi~L~lLLN~CGK~~P~GF~C  212 (214)
                      +..+.+.||..++.+.+ ....|||..++... .+ +++|...++ .|...||...+. ++|
T Consensus        39 ~~~Ps~~CC~~l~~~~~-~~~~ClC~~~~~~~~~~-~~in~~~a~-~Lp~~Cg~~~~~-~~C   96 (96)
T PF14368_consen   39 GPAPSAACCSALKSVVQ-ADPPCLCQLLNSPGAPG-FGINVTRAL-ALPAACGVPVPP-SKC   96 (96)
T ss_dssp             -----HHHHHHHCC-----HCCHHHCCCC-CCHCH-HCCTCHHHH-HHHHHCTSS-S-----
T ss_pred             CCCCCHHHHHHHHHhcc-CCCCCHHHhcCcccccc-CCcCHHHHH-HHHHHcCCCCCC-CCC
Confidence            34577889999999977 44999999999876 55 667766555 567899999998 887

>cd00010 AAI_LTSS AAI_LTSS: Alpha-Amylase Inhibitors (AAI), Lipid Transfer (LT) and Seed Storage (SS) Protein family; a protein family unique to higher plants that includes cereal-type alpha-amylase inhibitors, lipid transfer proteins, seed storage proteins, and similar proteins

Probab=95.78  E-value=0.0037  Score=43.04  Aligned_cols=60  Identities=27%  Similarity=0.567  Sum_probs=38.6

Q ss_pred             cccccccccccccccCCCCCCCCchhhhccccccchhhhhHHHhhhhcccccc-ccchhhHHHhhhcC
Q 028062          137 GACVDVLGGLIHIGLGDSAKEKCCPLLQGLADLDAAVCLCTAIRLKALNLINL-LVPISLQVLVNDCG  203 (214)
Q Consensus       137 gvCanVLgGLv~~~lG~P~~~pCCpLI~GLaDldAAvCLCtAIKAnVLGlInl-niPi~L~lLLN~CG  203 (214)
                      -.|.+.+.|     -+..+.+.||.-++.+.+.| ..|||..+|....+...+ |. .....|.+.||
T Consensus         2 ~~C~~y~~~-----~~~~Ps~~CC~~l~~~~~~~-~~ClC~~~~~~~~~~~~~~~~-~~a~~LP~~Cg   62 (63)
T cd00010           2 APCLSYLTG-----GATAPPSDCCSGLKSVVKSD-PKCLCAALNGPGASLLGLKNA-TRALALPAACG   62 (63)
T ss_pred             cchHHHHcC-----CCCCCChHHHHHHHHHHhcC-hhhHHHHHcCccccccCcccH-HHHHhchHhcC
Confidence            457766642     11346678999999987664 569999999865442222 22 23445667787

Proteins in this family are known to play important roles, in defending plants from insects and pathogens, lipid transport between intracellular membranes, and nutrient storage. Many proteins of this family have been identified as allergens in humans. These proteins contain a common pattern of eight cysteines that form four disulfide bridges.

>cd01959 nsLTP2 nsLTP2: Non-specific lipid-transfer protein type 2 (nsLTP2) subfamily; Plant nsLTPs are small, soluble proteins that facilitate the transfer of fatty acids, phospholipids, glycolipids, and steroids between membranes

Probab=95.72  E-value=0.0024  Score=46.54  Aligned_cols=64  Identities=22%  Similarity=0.497  Sum_probs=46.4

Q ss_pred             cccCccccccccccccccccCCCCCCCCchhhhccccccchhhhhHHHhhhhccccccccchhhHHHhhhcCCCCCC
Q 028062          132 DALKLGACVDVLGGLIHIGLGDSAKEKCCPLLQGLADLDAAVCLCTAIRLKALNLINLLVPISLQVLVNDCGKYPPA  208 (214)
Q Consensus       132 DaLKLgvCanVLgGLv~~~lG~P~~~pCCpLI~GLaDldAAvCLCtAIKAnVLGlInlniPi~L~lLLN~CGK~~P~  208 (214)
                      |..+|..|...+.      .|.++..+||.-|+.     +.-|||.-+|...|+ ..||.+.+++ |.+.||..+|.
T Consensus         2 ~~~~L~~C~~ai~------~~~~Ps~~CC~~Lk~-----~~~CLC~y~~~p~l~-~~i~~~~A~~-l~~~Cgv~~P~   65 (66)
T cd01959           2 NPTQLSPCLPAIL------GGSPPSAACCAKLKE-----QQSCLCQYAKNPSLK-QYVNSPNARK-VLAACGVPYPN   65 (66)
T ss_pred             ChhhcccCHHHHh------CCCCCCHHHHHHHhc-----CCCCeeeeecCccHH-hhcCcHHHHH-HHHHcCCCCCC
Confidence            3457888987653      246788899999996     337999999876666 3456666665 56799998853

In addition to lipid transport and assembly, nsLTPs also play a key role in the defense of plants against pathogens. There are two closely-related types of nsLTPs, types 1 and 2, which differ in protein sequence, molecular weight, and biological properties. nsLTPs contain an internal hydrophobic cavity, which serves as the binding site for lipids. nsLTP2 can bind lipids and sterols. Structure studies of rice nsLTPs show that the plasticity of the hydrophobic cavity is an important factor in ligand binding. The flexibility of the sLTP2 cavity allows its binding to rigid sterol molecules, whereas nsLTP1 cannot bind sterols despite its larger cavity size. The resulting nsLTP2/sterol complexes may bind to receptors that trigger defense responses. nsLTP2 gene exp

>PF00234 Tryp_alpha_amyl: Protease inhibitor/seed storage/LTP family This is a small subfamily; InterPro: IPR003612 This domain is found is several proteins, including plant lipid transfer proteins [], seed storage proteins [] and trypsin-alpha amylase inhibitors [, ]

Probab=95.10  E-value=0.002  Score=46.86  Aligned_cols=69  Identities=29%  Similarity=0.617  Sum_probs=48.3

Q ss_pred             ccCccccccccccccccccCCCCCCCCchhhhccccccchhhhhHHHhhhhcccc----------ccccchhhHHHhhhc
Q 028062          133 ALKLGACVDVLGGLIHIGLGDSAKEKCCPLLQGLADLDAAVCLCTAIRLKALNLI----------NLLVPISLQVLVNDC  202 (214)
Q Consensus       133 aLKLgvCanVLgGLv~~~lG~P~~~pCCpLI~GLaDldAAvCLCtAIKAnVLGlI----------nlniPi~L~lLLN~C  202 (214)
                      ...|..|...+.|-.     ....+.||.-|+.|    ...|.|.+||..+.+++          .++.- ....|.+.|
T Consensus        12 ~~~l~~c~~~~~~~~-----~~~~~~CC~~L~~l----~~~C~C~~i~~~~~~~~~q~~~~~~~~~~~~~-~a~~LP~~C   81 (90)
T PF00234_consen   12 QVRLSPCLPYLQGGC-----QQPSQQCCQQLRQL----DPQCRCEAIRQMVRQVIQQQQQGGQEMQIMAQ-RAQNLPSMC   81 (90)
T ss_dssp             SSHHHGGHHHHTTSS-----SHHHHHHHHHHHHH----HHHHHHHHHHHHHHHSHHCTSTCSHHHHHHHH-HHHHHHHHT
T ss_pred             cccccccHHHHhccc-----ccchHHHhHHHHHH----hHHhhCHHHHHHHHhhhhhhhhhHHHHHHHHH-HHHHHHHHC
Confidence            355777876664211     12456799999988    88999999999988721          44443 455688899


Q ss_pred             CCCCCCCCcC
Q 028062          203 GKYPPAGFQC  212 (214)
Q Consensus       203 GK~~P~GF~C  212 (214)
                      |..++. |.|
T Consensus        82 ~v~~~~-~~C   90 (90)
T PF00234_consen   82 NVSPPY-TDC   90 (90)
T ss_dssp             TSSSSS-S-G
T ss_pred             CCCCCC-CCC
Confidence            999887 665

The domain forms a four-helical bundle in a right-handed superhelix with a folded leaf topology, which is stabilised by disulphide bonds, and which has an internal cavity. More information about this protein can be found at Protein of the Month: alpha-Amylase [].; PDB: 1BFA_A 1BEA_A 1MID_A 1BE2_A 1LIP_A 3GSH_A 1JTB_A 1UVC_B 1BV2_A 1UVB_A ....

>PF04554 Extensin_2: Extensin-like region; InterPro: IPR006706 Extensins are homologous hydroxyproline-rich glycoproteins (HRGPs) found in the plant extracellular matrix

Probab=93.48  E-value=0.22  Score=36.54  Aligned_cols=32  Identities=69%  Similarity=1.164  Sum_probs=16.4

Q ss_pred             CCCccCCCCCCCCCCCCCCCCCCCCcCCCCCC
Q 028062           67 PPPVVKSAPPPPPPVAKSPPPPPPVVKSPPPP   98 (214)
Q Consensus        67 ~~~~~~~~~~~~~~~~~~~~~p~p~~~~pppp   98 (214)
                      ...++++++++..+++++++++--.+++++++
T Consensus        16 p~~~Y~SPPPP~~Y~Y~SPPPP~y~Y~sPpPp   47 (58)
T PF04554_consen   16 PPYVYKSPPPPKPYVYKSPPPPVYKYKSPPPP   47 (58)
T ss_pred             CCccccCCcCCCCcccCCCCCCcccccCCCCC
Confidence            33445555555445666665544444555444

They form a structural component which strengthens the primary cell wall; they can account for up to 20% of the dry weight of the cell wall. The key to the role of HRGPs in cell wall self-assembly and cell extension lies in their chemistry, which is dependent on extensive post-translational modifications (PTMs): hydroxylation, glycosylation, and cross-linking. Repetitive peptide motifs characterise HRGPs.; GO: 0005199 structural constituent of cell wall, 0009664 plant-type cell wall organization

>cd01960 nsLTP1 nsLTP1: Non-specific lipid-transfer protein type 1 (nsLTP1) subfamily; Plant nsLTPs are small, soluble proteins that facilitate the transfer of fatty acids, phospholipids, glycolipids, and steroids between membranes

Probab=92.48  E-value=0.028  Score=41.65  Aligned_cols=69  Identities=25%  Similarity=0.415  Sum_probs=44.6

Q ss_pred             cccCccccccccccccccccCCCCCCCCchhhhccccc----cchhhhhHHHhhhhccccc-cccchhhHHHhhhcCCCC
Q 028062          132 DALKLGACVDVLGGLIHIGLGDSAKEKCCPLLQGLADL----DAAVCLCTAIRLKALNLIN-LLVPISLQVLVNDCGKYP  206 (214)
Q Consensus       132 DaLKLgvCanVLgGLv~~~lG~P~~~pCCpLI~GLaDl----dAAvCLCtAIKAnVLGlIn-lniPi~L~lLLN~CGK~~  206 (214)
                      ...+|..|.+.+.|-     +..+...||.-++.|.+.    +...|+|.-++..+.+ +. ||...++ .|-..||-..
T Consensus         6 v~~~l~~C~~y~~g~-----~~~Ps~~CC~~v~~l~~~~~t~~~~~~~C~C~~~~~~~-~~~i~~~~a~-~LP~~C~v~~   78 (89)
T cd01960           6 VTSLLAPCLGYLTGG-----GPAPSPACCSGVKSLNGLAKTTADRQAACNCLKSAAAG-ISGLNPGRAA-GLPGKCGVSI   78 (89)
T ss_pred             HHhhHHhHHHHHhCC-----CCCCChHHhhhhHHHhhccCCCCchhhhhhcccccccc-cCCCCHHHHH-hChHhcccCC
Confidence            345778888887532     234667899999998654    2234666667776666 43 5544444 4667899875


Q ss_pred             C
Q 028062          207 P  207 (214)
Q Consensus       207 P  207 (214)
                      +
T Consensus        79 ~   79 (89)
T cd01960          79 P   79 (89)
T ss_pred             C
Confidence            4

In addition to lipid transport and assembly, nsLTPs also play a key role in the defense of plants against pathogens. There are two closely-related types of nsLTPs, types 1 and 2, which differ in protein sequence, molecular weight, and biological properties. nsLTPs contain an internal hydrophobic cavity, which serves as the binding site for lipids. The hydrophobic cavity accommodates various fatty acid ligands containing from ten to 18 carbon atoms. In general, the cavity is larger in nsLTP1 than in nsLTP2. nsLTP1 proteins are located in extracellular layers and in vacuolar structures. They may be involved in the formation of cutin layers on plant surfaces by transporting cutin monomers. Many nsLTP1 proteins have been characterized as allergens in humans.

>PF04554 Extensin_2: Extensin-like region; InterPro: IPR006706 Extensins are homologous hydroxyproline-rich glycoproteins (HRGPs) found in the plant extracellular matrix

Probab=90.43  E-value=0.85  Score=33.52  Aligned_cols=26  Identities=69%  Similarity=1.091  Sum_probs=11.1

Q ss_pred             ccCCCCCCCCCCCCCCCCCC-CCcCCCC
Q 028062           70 VVKSAPPPPPPVAKSPPPPP-PVVKSPP   96 (214)
Q Consensus        70 ~~~~~~~~~~~~~~~~~~p~-p~~~~pp   96 (214)
                      ++++++++. .++++++++. -++++++
T Consensus        30 ~Y~SPPPP~-y~Y~sPpPp~~y~YkSPP   56 (58)
T PF04554_consen   30 VYKSPPPPV-YKYKSPPPPPHYVYKSPP   56 (58)
T ss_pred             ccCCCCCCc-ccccCCCCCcCcccCCCC
Confidence            444444322 4444544443 3445443

They form a structural component which strengthens the primary cell wall; they can account for up to 20% of the dry weight of the cell wall. The key to the role of HRGPs in cell wall self-assembly and cell extension lies in their chemistry, which is dependent on extensive post-translational modifications (PTMs): hydroxylation, glycosylation, and cross-linking. Repetitive peptide motifs characterise HRGPs.; GO: 0005199 structural constituent of cell wall, 0009664 plant-type cell wall organization

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	214
1hyp_A	80	Crystal Structure Of Hydrophobic Protein From Soybe		8e-07

>pdb|1HYP|A Chain A, Crystal Structure Of Hydrophobic Protein From Soybean; A Member Of A New Cystine-Rich Family Length = 80

Iteration: 1
 Score = 50.1 bits (118), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 32/89 (35%), Positives = 52/89 (58%), Gaps = 14/89 (15%)
Query: 125 KQQTCPIDALKLGACVDVLGGLIHIGLGDSAKEKCCPLLQGLADLDAAVCLCTAIRLKAL 184
            + +CP     L  C+++LGG +         + CC L+ GL D++A VCLC  I+L+AL
Sbjct: 4   TRPSCP----DLSICLNILGGSL------GTVDDCCALIGGLGDIEAIVCLC--IQLRAL 51
Query: 185 NLINLLVPISLQVLVNDCGKYPPAGFQCP 213
            ++NL    +LQ+++N CG+  P+   CP
Sbjct: 52  GILNL--NRNLQLILNSCGRSYPSNATCP 78

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	214
1hyp_A	80	Hydrophobic protein from soybean; hydrophobic SEED	3e-20
3gdb_A	937	Endo-D, putative uncharacterized protein SPR0440;	1e-11
3gdb_A	937	Endo-D, putative uncharacterized protein SPR0440;	1e-10
3gdb_A	937	Endo-D, putative uncharacterized protein SPR0440;	2e-10
3gdb_A	937	Endo-D, putative uncharacterized protein SPR0440;	4e-10
3gdb_A	937	Endo-D, putative uncharacterized protein SPR0440;	1e-07
3gdb_A	937	Endo-D, putative uncharacterized protein SPR0440;	2e-06
3gdb_A	937	Endo-D, putative uncharacterized protein SPR0440;	3e-06
3gdb_A	937	Endo-D, putative uncharacterized protein SPR0440;	4e-04
3nwa_A	703	GB, GB-1, GB1, envelope glycoprotein B; coiled-coi	5e-10
3nwa_A	703	GB, GB-1, GB1, envelope glycoprotein B; coiled-coi	3e-05
1m2v_B	926	SEC24, protein transport protein SEC24, SEC24P, SE	1e-09
1m2v_B	926	SEC24, protein transport protein SEC24, SEC24P, SE	2e-08
1m2v_B	926	SEC24, protein transport protein SEC24, SEC24P, SE	2e-08
1m2v_B	926	SEC24, protein transport protein SEC24, SEC24P, SE	2e-08
1m2v_B	926	SEC24, protein transport protein SEC24, SEC24P, SE	2e-08
1m2v_B	926	SEC24, protein transport protein SEC24, SEC24P, SE	9e-08
1m2v_B	926	SEC24, protein transport protein SEC24, SEC24P, SE	1e-07
1m2v_B	926	SEC24, protein transport protein SEC24, SEC24P, SE	3e-05
1m2v_B	926	SEC24, protein transport protein SEC24, SEC24P, SE	6e-05
1m2v_B	926	SEC24, protein transport protein SEC24, SEC24P, SE	9e-05
1m2v_B	926	SEC24, protein transport protein SEC24, SEC24P, SE	2e-04
1m2v_B	926	SEC24, protein transport protein SEC24, SEC24P, SE	5e-04
3iox_A	497	AGI/II, PA; alpha helix, PPII helix, supersandwich	2e-09
3iox_A	497	AGI/II, PA; alpha helix, PPII helix, supersandwich	2e-09
3iox_A	497	AGI/II, PA; alpha helix, PPII helix, supersandwich	7e-06
3iox_A	497	AGI/II, PA; alpha helix, PPII helix, supersandwich	7e-05
3v1v_A	433	2-MIB synthase, 2-methylisoborneol synthase; class	2e-09
3v1v_A	433	2-MIB synthase, 2-methylisoborneol synthase; class	3e-08
3v1v_A	433	2-MIB synthase, 2-methylisoborneol synthase; class	8e-07
3v1v_A	433	2-MIB synthase, 2-methylisoborneol synthase; class	1e-05
3v1v_A	433	2-MIB synthase, 2-methylisoborneol synthase; class	2e-05
3v1v_A	433	2-MIB synthase, 2-methylisoborneol synthase; class	6e-05
1pk8_A	422	RAT synapsin I; ATP binding, ATP grAsp, calcium (I	1e-07
1pk8_A	422	RAT synapsin I; ATP binding, ATP grAsp, calcium (I	2e-05
1pk8_A	422	RAT synapsin I; ATP binding, ATP grAsp, calcium (I	4e-05
3dzy_A	467	Retinoic acid receptor RXR-alpha; DNA-binding, HOS	8e-06
3dzy_A	467	Retinoic acid receptor RXR-alpha; DNA-binding, HOS	3e-05
3dzy_A	467	Retinoic acid receptor RXR-alpha; DNA-binding, HOS	1e-04
3dzy_A	467	Retinoic acid receptor RXR-alpha; DNA-binding, HOS	4e-04
2h8h_A	535	Proto-oncogene tyrosine-protein kinase SRC; SRC ki	1e-05
3dva_I	428	Dihydrolipoyllysine-residue acetyltransferase comp	2e-05
3dva_I	428	Dihydrolipoyllysine-residue acetyltransferase comp	5e-04
3dva_I	428	Dihydrolipoyllysine-residue acetyltransferase comp	6e-04
2z73_A	448	Rhodopsin; visual pigment, GQ-type, G-protein coup	3e-05
2yew_A	253	Capsid protein, coat protein; alphavirus, molecula	3e-05
2yew_A	253	Capsid protein, coat protein; alphavirus, molecula	9e-05
2yew_A	253	Capsid protein, coat protein; alphavirus, molecula	4e-04
2yew_A	253	Capsid protein, coat protein; alphavirus, molecula	5e-04
2uv9_A	1878	Fatty acid synthase alpha subunits; fungal, dehydr	3e-05
2uv9_A	1878	Fatty acid synthase alpha subunits; fungal, dehydr	1e-04
2uv9_A	1878	Fatty acid synthase alpha subunits; fungal, dehydr	2e-04
2uv9_A	1878	Fatty acid synthase alpha subunits; fungal, dehydr	2e-04
2uv9_A	1878	Fatty acid synthase alpha subunits; fungal, dehydr	3e-04
2uv9_A	1878	Fatty acid synthase alpha subunits; fungal, dehydr	5e-04
2uv9_A	1878	Fatty acid synthase alpha subunits; fungal, dehydr	6e-04
2uv9_A	1878	Fatty acid synthase alpha subunits; fungal, dehydr	6e-04
2uv8_A	1887	Fatty acid synthase subunit alpha (FAS2); fatty ac	4e-05
2uv8_A	1887	Fatty acid synthase subunit alpha (FAS2); fatty ac	6e-05
2uv8_A	1887	Fatty acid synthase subunit alpha (FAS2); fatty ac	7e-05
2uv8_A	1887	Fatty acid synthase subunit alpha (FAS2); fatty ac	7e-05
2uv8_A	1887	Fatty acid synthase subunit alpha (FAS2); fatty ac	3e-04
2uv8_A	1887	Fatty acid synthase subunit alpha (FAS2); fatty ac	3e-04
2uv8_A	1887	Fatty acid synthase subunit alpha (FAS2); fatty ac	5e-04
2uv8_A	1887	Fatty acid synthase subunit alpha (FAS2); fatty ac	6e-04
2uv8_A	1887	Fatty acid synthase subunit alpha (FAS2); fatty ac	8e-04
2uv8_A	1887	Fatty acid synthase subunit alpha (FAS2); fatty ac	8e-04
2iut_A	574	DNA translocase FTSK; nucleotide-binding, chromoso	5e-05
2iut_A	574	DNA translocase FTSK; nucleotide-binding, chromoso	2e-04
1x9d_A	538	Endoplasmic reticulum mannosyl-oligosaccharide 1,	1e-04
1x9d_A	538	Endoplasmic reticulum mannosyl-oligosaccharide 1,	1e-04
1x9d_A	538	Endoplasmic reticulum mannosyl-oligosaccharide 1,	2e-04
1x9d_A	538	Endoplasmic reticulum mannosyl-oligosaccharide 1,	3e-04
2pzi_A	681	Probable serine/threonine-protein kinase PKNG; ATP	1e-04
2pzi_A	681	Probable serine/threonine-protein kinase PKNG; ATP	2e-04
2wvr_C	546	DNA replication factor CDT1; DNA replication licen	2e-04
2wvr_C	546	DNA replication factor CDT1; DNA replication licen	3e-04
2wvr_C	546	DNA replication factor CDT1; DNA replication licen	3e-04
3tx7_B	352	Nuclear receptor subfamily 5 group A member 2; LRH	2e-04
3a58_A	320	Exocyst complex component SEC3; protein complex, P	4e-04
3a58_A	320	Exocyst complex component SEC3; protein complex, P	5e-04
3a58_A	320	Exocyst complex component SEC3; protein complex, P	5e-04
1deq_A	390	Fibrinogen (alpha chain); coiled-coil, blood clott	4e-04
1deq_A	390	Fibrinogen (alpha chain); coiled-coil, blood clott	7e-04
2wd6_A	349	Agglutinin receptor; cell adhesion, secreted, V-re	5e-04
2wd6_A	349	Agglutinin receptor; cell adhesion, secreted, V-re	7e-04
2wd6_A	349	Agglutinin receptor; cell adhesion, secreted, V-re	8e-04
2es4_D	332	Lipase chaperone; protein-protein complex, steric	5e-04
3h0g_A	1752	DNA-directed RNA polymerase II subunit RPB1; trans	5e-04
3h0g_A	1752	DNA-directed RNA polymerase II subunit RPB1; trans	6e-04
1twf_A	1733	B220, DNA-directed RNA polymerase II largest subun	6e-04
2vg3_A	284	Undecaprenyl pyrophosphate synthetase; transferase	7e-04

>1hyp_A Hydrophobic protein from soybean; hydrophobic SEED protein; 1.80A {Glycine max} SCOP: a.52.1.1 Length = 80

 Score = 80.3 bits (198), Expect = 3e-20
 Identities = 28/89 (31%), Positives = 47/89 (52%), Gaps = 14/89 (15%)

Query: 126 QQTCPIDALKLGACVDVLGGLIHIGLGDSAKEKCCPLLQGLADLDAAVCLCTAIRLKALN 185
           + +CP     L  C+++LGG +         + CC L+ GL D++A VCLC  +R   + 
Sbjct: 5   RPSCP----DLSICLNILGGSLG------TVDDCCALIGGLGDIEAIVCLCIQLRALGI- 53

Query: 186 LINLLVPISLQVLVNDCGKYPPAGFQCPA 214
              L +  +LQ+++N CG+  P+   CP 
Sbjct: 54  ---LNLNRNLQLILNSCGRSYPSNATCPR 79

>3gdb_A Endo-D, putative uncharacterized protein SPR0440; alpha-beta-barrels, cell WALL, peptidoglycan-anchor, secreted, hydrolase; HET: PGE; 1.87A {Streptococcus pneumoniae} PDB: 2xqx_A Length = 937

 Score = 62.3 bits (150), Expect = 1e-11
 Identities = 12/98 (12%), Positives = 17/98 (17%)

Query: 31  PPPPPASKTPNCPPPPSSPSPKTPPPPPPFVKSPPPPPPVVKSAPPPPPPVAKSPPPPPP 90
               P +   N           T                + K+          SP     
Sbjct: 23  ETAVPENSGANTELVSGESEHSTNEADKQNEGEHARENKLEKAEGVATASETASPASNEA 82

Query: 91  VVKSPPPPIVKPPPPNGPSPKSPPPPSVRYPPPPKQQT 128
                        P    S      PS    P   ++T
Sbjct: 83  ATTETAEAASAAKPEEKASEVVAETPSAEAKPKSDKET 120

>3gdb_A Endo-D, putative uncharacterized protein SPR0440; alpha-beta-barrels, cell WALL, peptidoglycan-anchor, secreted, hydrolase; HET: PGE; 1.87A {Streptococcus pneumoniae} PDB: 2xqx_A Length = 937

 Score = 59.2 bits (142), Expect = 1e-10
 Identities = 9/103 (8%), Positives = 20/103 (19%)

Query: 31  PPPPPASKTPNCPPPPSSPSPKTPPPPPPFVKSPPPPPPVVKSAPPPPPPVAKSPPPPPP 90
                 +   N          +         ++  P      +        A  P     
Sbjct: 42  EHSTNEADKQNEGEHARENKLEKAEGVATASETASPASNEAATTETAEAASAAKPEEKAS 101

Query: 91  VVKSPPPPIVKPPPPNGPSPKSPPPPSVRYPPPPKQQTCPIDA 133
            V +  P     P  +  +   P   +      P  +    + 
Sbjct: 102 EVVAETPSAEAKPKSDKETEAKPEATNQGDESKPAAEANKTEK 144

>3gdb_A Endo-D, putative uncharacterized protein SPR0440; alpha-beta-barrels, cell WALL, peptidoglycan-anchor, secreted, hydrolase; HET: PGE; 1.87A {Streptococcus pneumoniae} PDB: 2xqx_A Length = 937

 Score = 58.4 bits (140), Expect = 2e-10
 Identities = 7/100 (7%), Positives = 16/100 (16%)

Query: 31  PPPPPASKTPNCPPPPSSPSPKTPPPPPPFVKSPPPPPPVVKSAPPPPPPVAKSPPPPPP 90
             P  +          S  S            +        +         + +      
Sbjct: 25  AVPENSGANTELVSGESEHSTNEADKQNEGEHARENKLEKAEGVATASETASPASNEAAT 84

Query: 91  VVKSPPPPIVKPPPPNGPSPKSPPPPSVRYPPPPKQQTCP 130
              +      KP           P    +     + +  P
Sbjct: 85  TETAEAASAAKPEEKASEVVAETPSAEAKPKSDKETEAKP 124

>3gdb_A Endo-D, putative uncharacterized protein SPR0440; alpha-beta-barrels, cell WALL, peptidoglycan-anchor, secreted, hydrolase; HET: PGE; 1.87A {Streptococcus pneumoniae} PDB: 2xqx_A Length = 937

 Score = 58.0 bits (139), Expect = 4e-10
 Identities = 8/100 (8%), Positives = 16/100 (16%)

Query: 29  NNPPPPPASKTPNCPPPPSSPSPKTPPPPPPFVKSPPPPPPVVKSAPPPPPPVAKSPPPP 88
           N+          +      +                            P    A +    
Sbjct: 29  NSGANTELVSGESEHSTNEADKQNEGEHARENKLEKAEGVATASETASPASNEAATTETA 88

Query: 89  PPVVKSPPPPIVKPPPPNGPSPKSPPPPSVRYPPPPKQQT 128
                + P           PS ++ P         P+   
Sbjct: 89  EAASAAKPEEKASEVVAETPSAEAKPKSDKETEAKPEATN 128

>3gdb_A Endo-D, putative uncharacterized protein SPR0440; alpha-beta-barrels, cell WALL, peptidoglycan-anchor, secreted, hydrolase; HET: PGE; 1.87A {Streptococcus pneumoniae} PDB: 2xqx_A Length = 937

 Score = 50.7 bits (120), Expect = 1e-07
 Identities = 6/84 (7%), Positives = 15/84 (17%), Gaps = 1/84 (1%)

Query: 45  PPSSPSPKTPPPPPPFVKSPPPPPPVVKSAPPPPPPVAKSPPPPPPVVKSPPPPIVKPPP 104
              +  P+        V                     ++       V +       P  
Sbjct: 21  GEETAVPENSGANTELVSGESEHSTNEADKQNEGEHARENKLEKAEGVATASET-ASPAS 79

Query: 105 PNGPSPKSPPPPSVRYPPPPKQQT 128
               + ++    S   P     + 
Sbjct: 80  NEAATTETAEAASAAKPEEKASEV 103

>3gdb_A Endo-D, putative uncharacterized protein SPR0440; alpha-beta-barrels, cell WALL, peptidoglycan-anchor, secreted, hydrolase; HET: PGE; 1.87A {Streptococcus pneumoniae} PDB: 2xqx_A Length = 937

 Score = 46.5 bits (109), Expect = 2e-06
 Identities = 4/88 (4%), Positives = 11/88 (12%)

Query: 43  PPPPSSPSPKTPPPPPPFVKSPPPPPPVVKSAPPPPPPVAKSPPPPPPVVKSPPPPIVKP 102
                  S           +                    +         ++  P   + 
Sbjct: 23  ETAVPENSGANTELVSGESEHSTNEADKQNEGEHARENKLEKAEGVATASETASPASNEA 82

Query: 103 PPPNGPSPKSPPPPSVRYPPPPKQQTCP 130
                    S   P  +      +    
Sbjct: 83  ATTETAEAASAAKPEEKASEVVAETPSA 110

>3gdb_A Endo-D, putative uncharacterized protein SPR0440; alpha-beta-barrels, cell WALL, peptidoglycan-anchor, secreted, hydrolase; HET: PGE; 1.87A {Streptococcus pneumoniae} PDB: 2xqx_A Length = 937

 Score = 46.5 bits (109), Expect = 3e-06
 Identities = 4/85 (4%), Positives = 15/85 (17%), Gaps = 2/85 (2%)

Query: 46  PSSPSPKTPPPPPPFVKSPPPPPPVVKSAPPPPPPVAKSPPPPPPVVKSPPPPIVKPPPP 105
             +   +      P  ++      +V          A          ++           
Sbjct: 14  LENLYFQGEETAVP--ENSGANTELVSGESEHSTNEADKQNEGEHARENKLEKAEGVATA 71

Query: 106 NGPSPKSPPPPSVRYPPPPKQQTCP 130
           +  +  +    +            P
Sbjct: 72  SETASPASNEAATTETAEAASAAKP 96

>3gdb_A Endo-D, putative uncharacterized protein SPR0440; alpha-beta-barrels, cell WALL, peptidoglycan-anchor, secreted, hydrolase; HET: PGE; 1.87A {Streptococcus pneumoniae} PDB: 2xqx_A Length = 937

 Score = 39.9 bits (92), Expect = 4e-04
 Identities = 5/70 (7%), Positives = 10/70 (14%)

Query: 64  PPPPPPVVKSAPPPPPPVAKSPPPPPPVVKSPPPPIVKPPPPNGPSPKSPPPPSVRYPPP 123
                    S         +S        K       +          +    +      
Sbjct: 21  GEETAVPENSGANTELVSGESEHSTNEADKQNEGEHARENKLEKAEGVATASETASPASN 80

Query: 124 PKQQTCPIDA 133
               T   +A
Sbjct: 81  EAATTETAEA 90

>3nwa_A GB, GB-1, GB1, envelope glycoprotein B; coiled-coil, membrane fusion, viral P glycoprotein B, HSV-1, membrane; HET: NAG; 2.26A {Human herpesvirus 1} PDB: 3nwf_A* 3nw8_A* 3nwd_A* Length = 703

 Score = 57.3 bits (138), Expect = 5e-10
 Identities = 23/110 (20%), Positives = 33/110 (30%), Gaps = 12/110 (10%)

Query: 30  NPPPPPASKTPNCPP--PPSSPSPKTPPPPPPFVKSPPPPPPVVKSAP----PPPPPVAK 83
           +P  P +  TP        ++  P TP PP         P P     P    PP P    
Sbjct: 1   DPAAPTSPGTPGVAAATQAANGGPATPAPPALGAAPTGDPKPKKNKKPKNPTPPRPAGDN 60

Query: 84  SPPPPPPVVKSPPPPIVKPPPPNGPSPKSPPPPS---VRYPPPPKQQTCP 130
           +               +K    +      PPP     V++  P   + CP
Sbjct: 61  ATVAAGHATLREHLRDIKAENTDANFYVCPPPTGATVVQFEQP---RRCP 107

>3nwa_A GB, GB-1, GB1, envelope glycoprotein B; coiled-coil, membrane fusion, viral P glycoprotein B, HSV-1, membrane; HET: NAG; 2.26A {Human herpesvirus 1} PDB: 3nwf_A* 3nw8_A* 3nwd_A* Length = 703

 Score = 43.4 bits (102), Expect = 3e-05
 Identities = 14/90 (15%), Positives = 25/90 (27%), Gaps = 13/90 (14%)

Query: 46  PSSPSPKTPPPPPPFVKSPPPPPPVVKSAPPPPPPVAKSPPPPPPVVKSPPPPIVKPPPP 105
           P++P+    P      ++    P    +  PP    A +  P P               P
Sbjct: 2   PAAPTSPGTPGVAAATQAANGGPA---TPAPPALGAAPTGDPKPKK----------NKKP 48

Query: 106 NGPSPKSPPPPSVRYPPPPKQQTCPIDALK 135
             P+P  P   +             +  +K
Sbjct: 49  KNPTPPRPAGDNATVAAGHATLREHLRDIK 78

>1m2v_B SEC24, protein transport protein SEC24, SEC24P, SEC24 protein, abnormal nuclear; zinc-finger, beta barrel, VWA domain, gelsolin domain,; 2.75A {Saccharomyces cerevisiae} SCOP: a.71.2.1 b.2.8.1 c.62.1.2 d.109.2.1 g.41.10.1 Length = 926

 Score = 56.4 bits (135), Expect = 1e-09
 Identities = 18/118 (15%), Positives = 29/118 (24%), Gaps = 2/118 (1%)

Query: 31  PPPPPASKTPNCPPPPSSPSPKTPPPPPPFVKSPPPPPPVVKSAPPPPPPVAKSPPPPPP 90
               P  +     PP    +             P    P +       P   +       
Sbjct: 18  QNATPLQQPAQFMPPQDPAAA--GMSYGQMGMPPQGAVPSMGQQQFLTPAQEQLHQQIDQ 75

Query: 91  VVKSPPPPIVKPPPPNGPSPKSPPPPSVRYPPPPKQQTCPIDALKLGACVDVLGGLIH 148
              S     +   P   P+    P   V+   P +QQ  P+ A   G     +G  + 
Sbjct: 76  ATTSMNDMHLHNVPLVDPNAYMQPQVPVQMGTPLQQQQQPMAAPAYGQPSAAMGQNMR 133

>1m2v_B SEC24, protein transport protein SEC24, SEC24P, SEC24 protein, abnormal nuclear; zinc-finger, beta barrel, VWA domain, gelsolin domain,; 2.75A {Saccharomyces cerevisiae} SCOP: a.71.2.1 b.2.8.1 c.62.1.2 d.109.2.1 g.41.10.1 Length = 926

 Score = 52.9 bits (126), Expect = 2e-08
 Identities = 10/103 (9%), Positives = 15/103 (14%)

Query: 28  SNNPPPPPASKTPNCPPPPSSPSPKTPPPPPPFVKSPPPPPPVVKSAPPPPPPVAKSPPP 87
              P      + P             P    P +       P  +           S   
Sbjct: 23  LQQPAQFMPPQDPAAAGMSYGQMGMPPQGAVPSMGQQQFLTPAQEQLHQQIDQATTSMND 82

Query: 88  PPPVVKSPPPPIVKPPPPNGPSPKSPPPPSVRYPPPPKQQTCP 130
                     P     P       +P     +    P      
Sbjct: 83  MHLHNVPLVDPNAYMQPQVPVQMGTPLQQQQQPMAAPAYGQPS 125

>1m2v_B SEC24, protein transport protein SEC24, SEC24P, SEC24 protein, abnormal nuclear; zinc-finger, beta barrel, VWA domain, gelsolin domain,; 2.75A {Saccharomyces cerevisiae} SCOP: a.71.2.1 b.2.8.1 c.62.1.2 d.109.2.1 g.41.10.1 Length = 926

 Score = 52.9 bits (126), Expect = 2e-08
 Identities = 10/100 (10%), Positives = 21/100 (21%)

Query: 28  SNNPPPPPASKTPNCPPPPSSPSPKTPPPPPPFVKSPPPPPPVVKSAPPPPPPVAKSPPP 87
            +      +      PP  + PS        P  +          ++             
Sbjct: 33  QDPAAAGMSYGQMGMPPQGAVPSMGQQQFLTPAQEQLHQQIDQATTSMNDMHLHNVPLVD 92

Query: 88  PPPVVKSPPPPIVKPPPPNGPSPKSPPPPSVRYPPPPKQQ 127
           P   ++   P  +  P      P + P          +  
Sbjct: 93  PNAYMQPQVPVQMGTPLQQQQQPMAAPAYGQPSAAMGQNM 132

>1m2v_B SEC24, protein transport protein SEC24, SEC24P, SEC24 protein, abnormal nuclear; zinc-finger, beta barrel, VWA domain, gelsolin domain,; 2.75A {Saccharomyces cerevisiae} SCOP: a.71.2.1 b.2.8.1 c.62.1.2 d.109.2.1 g.41.10.1 Length = 926

 Score = 52.5 bits (125), Expect = 2e-08
 Identities = 10/85 (11%), Positives = 16/85 (18%)

Query: 43  PPPPSSPSPKTPPPPPPFVKSPPPPPPVVKSAPPPPPPVAKSPPPPPPVVKSPPPPIVKP 102
           P           P   P    PP  P     +        +   P     +   P   + 
Sbjct: 10  PQAQLQYGQNATPLQQPAQFMPPQDPAAAGMSYGQMGMPPQGAVPSMGQQQFLTPAQEQL 69

Query: 103 PPPNGPSPKSPPPPSVRYPPPPKQQ 127
                 +  S     +   P     
Sbjct: 70  HQQIDQATTSMNDMHLHNVPLVDPN 94

>1m2v_B SEC24, protein transport protein SEC24, SEC24P, SEC24 protein, abnormal nuclear; zinc-finger, beta barrel, VWA domain, gelsolin domain,; 2.75A {Saccharomyces cerevisiae} SCOP: a.71.2.1 b.2.8.1 c.62.1.2 d.109.2.1 g.41.10.1 Length = 926

 Score = 52.5 bits (125), Expect = 2e-08
 Identities = 14/99 (14%), Positives = 23/99 (23%), Gaps = 1/99 (1%)

Query: 33  PPPASKTPNCPPPPSSPSPKTPPPPPPFVKSPPPPPPV-VKSAPPPPPPVAKSPPPPPPV 91
           P    +      P   P+   PP  P           +  + A P         P    +
Sbjct: 10  PQAQLQYGQNATPLQQPAQFMPPQDPAAAGMSYGQMGMPPQGAVPSMGQQQFLTPAQEQL 69

Query: 92  VKSPPPPIVKPPPPNGPSPKSPPPPSVRYPPPPKQQTCP 130
            +            +  +     P +   P  P Q   P
Sbjct: 70  HQQIDQATTSMNDMHLHNVPLVDPNAYMQPQVPVQMGTP 108

>1m2v_B SEC24, protein transport protein SEC24, SEC24P, SEC24 protein, abnormal nuclear; zinc-finger, beta barrel, VWA domain, gelsolin domain,; 2.75A {Saccharomyces cerevisiae} SCOP: a.71.2.1 b.2.8.1 c.62.1.2 d.109.2.1 g.41.10.1 Length = 926

 Score = 51.0 bits (121), Expect = 9e-08
 Identities = 11/103 (10%), Positives = 20/103 (19%), Gaps = 2/103 (1%)

Query: 28  SNNPPPPPASKTPNCPPPPSSPSPKTPPPPPPFVKSPPPPPPVVKSAPPPPPPVAKSPPP 87
           +   PP   +           P     P         P    + +        +      
Sbjct: 27  AQFMPPQDPAAAGMSYGQMGMPPQGAVPSMGQQQFLTPAQEQLHQQIDQATTSMNDMHLH 86

Query: 88  PPPVVKSPPPPIVKPPPPNGPSPKSPPPPSVRYPPPPKQQTCP 130
             P+    P   ++P  P                P   Q +  
Sbjct: 87  NVPL--VDPNAYMQPQVPVQMGTPLQQQQQPMAAPAYGQPSAA 127

>1m2v_B SEC24, protein transport protein SEC24, SEC24P, SEC24 protein, abnormal nuclear; zinc-finger, beta barrel, VWA domain, gelsolin domain,; 2.75A {Saccharomyces cerevisiae} SCOP: a.71.2.1 b.2.8.1 c.62.1.2 d.109.2.1 g.41.10.1 Length = 926

 Score = 50.2 bits (119), Expect = 1e-07
 Identities = 12/102 (11%), Positives = 18/102 (17%)

Query: 31  PPPPPASKTPNCPPPPSSPSPKTPPPPPPFVKSPPPPPPVVKSAPPPPPPVAKSPPPPPP 90
              P   +     P       +                P+V       P V      P  
Sbjct: 51  GAVPSMGQQQFLTPAQEQLHQQIDQATTSMNDMHLHNVPLVDPNAYMQPQVPVQMGTPLQ 110

Query: 91  VVKSPPPPIVKPPPPNGPSPKSPPPPSVRYPPPPKQQTCPID 132
             + P        P         P   +       +   PI 
Sbjct: 111 QQQQPMAAPAYGQPSAAMGQNMRPMNQLYPIDLLTELPPPIT 152

>1m2v_B SEC24, protein transport protein SEC24, SEC24P, SEC24 protein, abnormal nuclear; zinc-finger, beta barrel, VWA domain, gelsolin domain,; 2.75A {Saccharomyces cerevisiae} SCOP: a.71.2.1 b.2.8.1 c.62.1.2 d.109.2.1 g.41.10.1 Length = 926

 Score = 43.3 bits (101), Expect = 3e-05
 Identities = 7/81 (8%), Positives = 11/81 (13%)

Query: 47  SSPSPKTPPPPPPFVKSPPPPPPVVKSAPPPPPPVAKSPPPPPPVVKSPPPPIVKPPPPN 106
           S    +  P           P        PP  P A         +              
Sbjct: 2   SHHKKRVYPQAQLQYGQNATPLQQPAQFMPPQDPAAAGMSYGQMGMPPQGAVPSMGQQQF 61

Query: 107 GPSPKSPPPPSVRYPPPPKQQ 127
               +      +         
Sbjct: 62  LTPAQEQLHQQIDQATTSMND 82

>1m2v_B SEC24, protein transport protein SEC24, SEC24P, SEC24 protein, abnormal nuclear; zinc-finger, beta barrel, VWA domain, gelsolin domain,; 2.75A {Saccharomyces cerevisiae} SCOP: a.71.2.1 b.2.8.1 c.62.1.2 d.109.2.1 g.41.10.1 Length = 926

 Score = 42.5 bits (99), Expect = 6e-05
 Identities = 19/94 (20%), Positives = 28/94 (29%)

Query: 31  PPPPPASKTPNCPPPPSSPSPKTPPPPPPFVKSPPPPPPVVKSAPPPPPPVAKSPPPPPP 90
                 +       P   P+    P  P  + +P        +AP    P A       P
Sbjct: 75  QATTSMNDMHLHNVPLVDPNAYMQPQVPVQMGTPLQQQQQPMAAPAYGQPSAAMGQNMRP 134

Query: 91  VVKSPPPPIVKPPPPNGPSPKSPPPPSVRYPPPP 124
           + +  P  ++   PP       PPPP V  P   
Sbjct: 135 MNQLYPIDLLTELPPPITDLTLPPPPLVIPPERM 168

>1m2v_B SEC24, protein transport protein SEC24, SEC24P, SEC24 protein, abnormal nuclear; zinc-finger, beta barrel, VWA domain, gelsolin domain,; 2.75A {Saccharomyces cerevisiae} SCOP: a.71.2.1 b.2.8.1 c.62.1.2 d.109.2.1 g.41.10.1 Length = 926

 Score = 41.7 bits (97), Expect = 9e-05
 Identities = 9/101 (8%), Positives = 17/101 (16%), Gaps = 4/101 (3%)

Query: 28  SNNPPPPPASKTPNCPPPPSSPSPKTPPPPPPFVKSPPPPPPVVKSAPPPPPPVAKSPPP 87
                    ++         + +              P   P     P  P  +      
Sbjct: 56  MGQQQFLTPAQEQLHQQIDQATTSMNDMHLHN----VPLVDPNAYMQPQVPVQMGTPLQQ 111

Query: 88  PPPVVKSPPPPIVKPPPPNGPSPKSPPPPSVRYPPPPKQQT 128
               + +P              P +   P       P   T
Sbjct: 112 QQQPMAAPAYGQPSAAMGQNMRPMNQLYPIDLLTELPPPIT 152

>1m2v_B SEC24, protein transport protein SEC24, SEC24P, SEC24 protein, abnormal nuclear; zinc-finger, beta barrel, VWA domain, gelsolin domain,; 2.75A {Saccharomyces cerevisiae} SCOP: a.71.2.1 b.2.8.1 c.62.1.2 d.109.2.1 g.41.10.1 Length = 926

 Score = 40.6 bits (94), Expect = 2e-04
 Identities = 13/99 (13%), Positives = 20/99 (20%)

Query: 31  PPPPPASKTPNCPPPPSSPSPKTPPPPPPFVKSPPPPPPVVKSAPPPPPPVAKSPPPPPP 90
                     +  P     +   P  P             + +     P  A      P 
Sbjct: 76  ATTSMNDMHLHNVPLVDPNAYMQPQVPVQMGTPLQQQQQPMAAPAYGQPSAAMGQNMRPM 135

Query: 91  VVKSPPPPIVKPPPPNGPSPKSPPPPSVRYPPPPKQQTC 129
               P   + + PPP       PPP  +           
Sbjct: 136 NQLYPIDLLTELPPPITDLTLPPPPLVIPPERMLVPSEL 174

>1m2v_B SEC24, protein transport protein SEC24, SEC24P, SEC24 protein, abnormal nuclear; zinc-finger, beta barrel, VWA domain, gelsolin domain,; 2.75A {Saccharomyces cerevisiae} SCOP: a.71.2.1 b.2.8.1 c.62.1.2 d.109.2.1 g.41.10.1 Length = 926

 Score = 39.4 bits (91), Expect = 5e-04
 Identities = 14/113 (12%), Positives = 23/113 (20%), Gaps = 2/113 (1%)

Query: 28  SNNPPPPPASKTPNCPPPPSSPSPKTPPPPPPFVKSPP-PPPPVVKSAPPPPPPVAKSPP 86
                      T +         P   P      + P     P+ +   P   P    P 
Sbjct: 66  QEQLHQQIDQATTSMNDMHLHNVPLVDPNAYMQPQVPVQMGTPLQQQQQPMAAPAYGQPS 125

Query: 87  PPPPVVKSPPPPIVKPPPPNGPSPKSPPPPSVRYPPPPKQQTCPIDALKLGAC 139
                    P   + P       P      ++  PP        +   +L   
Sbjct: 126 AAMG-QNMRPMNQLYPIDLLTELPPPITDLTLPPPPLVIPPERMLVPSELSNA 177

>3iox_A AGI/II, PA; alpha helix, PPII helix, supersandwich fold, surface adhesin WALL, peptidoglycan-anchor, cell adhesion; HET: PMS; 1.80A {Streptococcus mutans} PDB: 3ipk_A* 1jmm_A Length = 497

 Score = 55.7 bits (132), Expect = 2e-09
 Identities = 17/94 (18%), Positives = 25/94 (26%), Gaps = 6/94 (6%)

Query: 35  PASKTPNCPPPPSSPSPKTPPPPPPFVKSPPPPPPVVKSAPPPPPPVAKSPPPPPPVVKS 94
            A+        P  P         P +           + P          P PP    +
Sbjct: 404 SATNVMPVSDMPVVPGKDNTDGKKPNIWYSLNGKIRAVNVPKVTKE----KPTPPVKPTA 459

Query: 95  PPPPIVKPPPPNGPSPKSPPPPSVRYPPPPKQQT 128
           P  P  +   P  P+P +P       P PP +  
Sbjct: 460 PTKPTYETEKPLKPAPVAPNYEKE--PTPPTRLE 491

>3iox_A AGI/II, PA; alpha helix, PPII helix, supersandwich fold, surface adhesin WALL, peptidoglycan-anchor, cell adhesion; HET: PMS; 1.80A {Streptococcus mutans} PDB: 3ipk_A* 1jmm_A Length = 497

 Score = 55.3 bits (131), Expect = 2e-09
 Identities = 17/93 (18%), Positives = 22/93 (23%), Gaps = 8/93 (8%)

Query: 28  SNNPPPPPASKTPNCPPPPSSPSPKTPPPPPPFVKSPPPPPPVVKSAPPPPPPVAKSPPP 87
             +  P    K       P+             V       P      PP  P A + P 
Sbjct: 410 PVSDMPVVPGKDNTDGKKPNIWYSLNGKIRAVNVPKVTKEKPT-----PPVKPTAPTKPT 464

Query: 88  PPPVVKSPPPPIVKPPPPNGPSPKSPPPPSVRY 120
                   P P V P     P+P  P      +
Sbjct: 465 YETEKPLKPAP-VAPNYEKEPTP--PTRLEHHH 494

>3iox_A AGI/II, PA; alpha helix, PPII helix, supersandwich fold, surface adhesin WALL, peptidoglycan-anchor, cell adhesion; HET: PMS; 1.80A {Streptococcus mutans} PDB: 3ipk_A* 1jmm_A Length = 497

 Score = 45.3 bits (105), Expect = 7e-06
 Identities = 16/78 (20%), Positives = 19/78 (24%), Gaps = 1/78 (1%)

Query: 31  PPPPPASKTPNCPPPPSSPSPKTPPPPPPFVKSPPPPPPVVKSAPPPPPPVAKSP-PPPP 89
                  K PN     +        P     K  PP  P   + P         P P  P
Sbjct: 419 GKDNTDGKKPNIWYSLNGKIRAVNVPKVTKEKPTPPVKPTAPTKPTYETEKPLKPAPVAP 478

Query: 90  PVVKSPPPPIVKPPPPNG 107
              K P PP       + 
Sbjct: 479 NYEKEPTPPTRLEHHHHH 496

>3iox_A AGI/II, PA; alpha helix, PPII helix, supersandwich fold, surface adhesin WALL, peptidoglycan-anchor, cell adhesion; HET: PMS; 1.80A {Streptococcus mutans} PDB: 3ipk_A* 1jmm_A Length = 497

 Score = 42.2 bits (97), Expect = 7e-05
 Identities = 14/96 (14%), Positives = 21/96 (21%), Gaps = 3/96 (3%)

Query: 39  TPNCPPPPSSPSPKTPPPPPPFVKSPPPPPPVVKSAPPPPPPVAK-SPPPPPPVVKSPPP 97
             + P    +    +     P    P  P         P    +         V K    
Sbjct: 390 KMSGPNNYVTVGATSATNVMPVSDMPVVPGKDNTDGKKPNIWYSLNGKIRAVNVPKVTKE 449

Query: 98  PIVKPPPPNGPSPKSPP--PPSVRYPPPPKQQTCPI 131
               P  P  P+  +     P    P  P  +  P 
Sbjct: 450 KPTPPVKPTAPTKPTYETEKPLKPAPVAPNYEKEPT 485

>3v1v_A 2-MIB synthase, 2-methylisoborneol synthase; class I terpenoid cyclase fold, DDXXXXD motif, NDXXSXXXE MOT methylisoborneol biosynthesis; HET: GST; 1.80A {Streptomyces coelicolor} PDB: 3v1x_A* Length = 433

 Score = 55.5 bits (133), Expect = 2e-09
 Identities = 22/103 (21%), Positives = 31/103 (30%), Gaps = 1/103 (0%)

Query: 28  SNNPPPPPASKTPNCPPPPSSPSPKTPPPPPPFVKSPPPPPPVVKSAPPPPPPVAKSPPP 87
           S   P       P+     ++        PP  V  P PPPP    A   PP        
Sbjct: 12  SGLVPRGSHMVIPSASVTSAASDFLAALHPPVTVPDPAPPPPPA-PAAGNPPDTVTGDSV 70

Query: 88  PPPVVKSPPPPIVKPPPPNGPSPKSPPPPSVRYPPPPKQQTCP 130
              +++ P  P      P     + P P +    PP   +  P
Sbjct: 71  LQRILRGPTGPGTTSLAPAVRYGRQPGPEAPASAPPAAGRAVP 113

>3v1v_A 2-MIB synthase, 2-methylisoborneol synthase; class I terpenoid cyclase fold, DDXXXXD motif, NDXXSXXXE MOT methylisoborneol biosynthesis; HET: GST; 1.80A {Streptomyces coelicolor} PDB: 3v1x_A* Length = 433

 Score = 52.1 bits (124), Expect = 3e-08
 Identities = 17/100 (17%), Positives = 25/100 (25%)

Query: 28  SNNPPPPPASKTPNCPPPPSSPSPKTPPPPPPFVKSPPPPPPVVKSAPPPPPPVAKSPPP 87
           S +     +       PP + P P  PPPP P   +PP                      
Sbjct: 25  SASVTSAASDFLAALHPPVTVPDPAPPPPPAPAAGNPPDTVTGDSVLQRILRGPTGPGTT 84

Query: 88  PPPVVKSPPPPIVKPPPPNGPSPKSPPPPSVRYPPPPKQQ 127
                           P + P       P + + P P+  
Sbjct: 85  SLAPAVRYGRQPGPEAPASAPPAAGRAVPGLYHHPVPEPD 124

>3v1v_A 2-MIB synthase, 2-methylisoborneol synthase; class I terpenoid cyclase fold, DDXXXXD motif, NDXXSXXXE MOT methylisoborneol biosynthesis; HET: GST; 1.80A {Streptomyces coelicolor} PDB: 3v1x_A* Length = 433

 Score = 47.8 bits (113), Expect = 8e-07
 Identities = 17/95 (17%), Positives = 24/95 (25%), Gaps = 2/95 (2%)

Query: 30  NPPPPPASKTPNCPPPPSSPSPKTPPPPPPFVKSPPPPPPVVKSAPPPPPPVAKSPPPPP 89
             P    +   +       P    P P PP   +P    P                P  P
Sbjct: 22  VIPSASVTSAASDFLAALHPPVTVPDPAPPPPPAPAAGNPPDTVTGDSVLQRILRGPTGP 81

Query: 90  PVVKSPPPPIVKPPPPNGPSPKSPPPPSVRYPPPP 124
               +   P V+     GP   +  PP+     P 
Sbjct: 82  GT--TSLAPAVRYGRQPGPEAPASAPPAAGRAVPG 114

>3v1v_A 2-MIB synthase, 2-methylisoborneol synthase; class I terpenoid cyclase fold, DDXXXXD motif, NDXXSXXXE MOT methylisoborneol biosynthesis; HET: GST; 1.80A {Streptomyces coelicolor} PDB: 3v1x_A* Length = 433

 Score = 44.4 bits (104), Expect = 1e-05
 Identities = 14/83 (16%), Positives = 20/83 (24%), Gaps = 1/83 (1%)

Query: 31  PPPPPASKTPNCPPPPSSPSPKTPPPPPPFVKSPPPPPPVVKSAPPPPPPVAKSPPPPPP 90
           P PPP        PP +                P        +      P  ++P   PP
Sbjct: 48  PAPPPPPAPAAGNPPDTVTGDSVLQRILRGPTGPGTTSLAP-AVRYGRQPGPEAPASAPP 106

Query: 91  VVKSPPPPIVKPPPPNGPSPKSP 113
                 P +   P P     +  
Sbjct: 107 AAGRAVPGLYHHPVPEPDPVRVE 129

>3v1v_A 2-MIB synthase, 2-methylisoborneol synthase; class I terpenoid cyclase fold, DDXXXXD motif, NDXXSXXXE MOT methylisoborneol biosynthesis; HET: GST; 1.80A {Streptomyces coelicolor} PDB: 3v1x_A* Length = 433

 Score = 43.6 bits (102), Expect = 2e-05
 Identities = 19/100 (19%), Positives = 27/100 (27%), Gaps = 4/100 (4%)

Query: 31  PPPPPASKTPNCPPPPSSPSPKTPPPPPPFVKSPPPPPPVVKSAPPPPPPVAKSPPPPPP 90
              PP +     PPPP +P+   PP               +   P  P   + +P     
Sbjct: 38  ALHPPVTVPDPAPPPPPAPAAGNPPDTVT----GDSVLQRILRGPTGPGTTSLAPAVRYG 93

Query: 91  VVKSPPPPIVKPPPPNGPSPKSPPPPSVRYPPPPKQQTCP 130
               P  P   PP      P     P     P   ++   
Sbjct: 94  RQPGPEAPASAPPAAGRAVPGLYHHPVPEPDPVRVEEVSR 133

>3v1v_A 2-MIB synthase, 2-methylisoborneol synthase; class I terpenoid cyclase fold, DDXXXXD motif, NDXXSXXXE MOT methylisoborneol biosynthesis; HET: GST; 1.80A {Streptomyces coelicolor} PDB: 3v1x_A* Length = 433

 Score = 42.1 bits (98), Expect = 6e-05
 Identities = 12/86 (13%), Positives = 14/86 (16%), Gaps = 9/86 (10%)

Query: 45  PPSSPSPKTPPPPPPFVKSPPPPPPVVKSAPPPPPPVAKSPPPPPPVVKSPPPPIVKPPP 104
                      P          P      +         +   PP  V  P PP    P 
Sbjct: 5   HHHHHHSSGLVPRGS---HMVIPSA----SVTSAASDFLAALHPPVTVPDPAPPPPPAPA 57

Query: 105 PNGPSPKSPPP--PSVRYPPPPKQQT 128
              P                P    T
Sbjct: 58  AGNPPDTVTGDSVLQRILRGPTGPGT 83

>1pk8_A RAT synapsin I; ATP binding, ATP grAsp, calcium (II) ION, membrane protein; HET: ATP; 2.10A {Rattus norvegicus} SCOP: c.30.1.5 d.142.1.3 PDB: 1px2_A* Length = 422

 Score = 50.2 bits (119), Expect = 1e-07
 Identities = 14/103 (13%), Positives = 20/103 (19%), Gaps = 2/103 (1%)

Query: 21  TSLACDCSNNPPPPPASKTPNCPPPPSSPSPKTPPPPPPFVKSPPPPPPVVKSAPPPPPP 80
           ++   +  N          P  PPP ++    TP       +      PV   A P P  
Sbjct: 12  SNFMANLPNGYMTDLQRPQPPPPPPSAASPGATPGSAAASAERASTAAPVASPAAPSPGS 71

Query: 81  --VAKSPPPPPPVVKSPPPPIVKPPPPNGPSPKSPPPPSVRYP 121
                        VK                            
Sbjct: 72  SGGGGFFSSLSNAVKQTTAAAAATFSEQVGGGSGGAGRGGAAA 114

>1pk8_A RAT synapsin I; ATP binding, ATP grAsp, calcium (II) ION, membrane protein; HET: ATP; 2.10A {Rattus norvegicus} SCOP: c.30.1.5 d.142.1.3 PDB: 1px2_A* Length = 422

 Score = 44.1 bits (103), Expect = 2e-05
 Identities = 15/98 (15%), Positives = 20/98 (20%), Gaps = 9/98 (9%)

Query: 41  NCPPPPSSPSPKTPPPPPPFVKSPPPPPPVVKSAPPPPPPVAKSPPPPPPVVKSPPPP-- 98
           N P    +   +  PPPPP   + P   P   +A       A     P            
Sbjct: 17  NLPNGYMTDLQRPQPPPPPPSAASPGATPGSAAASAERASTAAPVASPAAPSPGSSGGGG 76

Query: 99  -------IVKPPPPNGPSPKSPPPPSVRYPPPPKQQTC 129
                   VK       +  S                 
Sbjct: 77  FFSSLSNAVKQTTAAAAATFSEQVGGGSGGAGRGGAAA 114

>1pk8_A RAT synapsin I; ATP binding, ATP grAsp, calcium (II) ION, membrane protein; HET: ATP; 2.10A {Rattus norvegicus} SCOP: c.30.1.5 d.142.1.3 PDB: 1px2_A* Length = 422

 Score = 42.9 bits (100), Expect = 4e-05
 Identities = 14/119 (11%), Positives = 22/119 (18%)

Query: 47  SSPSPKTPPPPPPFVKSPPPPPPVVKSAPPPPPPVAKSPPPPPPVVKSPPPPIVKPPPPN 106
            +  P          + PPPPP        P    A +         + P          
Sbjct: 15  MANLPNGYMTDLQRPQPPPPPPSAASPGATPGSAAASAERASTAAPVASPAAPSPGSSGG 74

Query: 107 GPSPKSPPPPSVRYPPPPKQQTCPIDALKLGACVDVLGGLIHIGLGDSAKEKCCPLLQG 165
           G    S      +                 G           + + D          +G
Sbjct: 75  GGFFSSLSNAVKQTTAAAAATFSEQVGGGSGGAGRGGAAARVLLVIDEPHTDWAKYFKG 133

>3dzy_A Retinoic acid receptor RXR-alpha; DNA-binding, HOST-virus interaction, metal-binding, nucleus, receptor, transcription, transcription regulation, zinc-FIN activator; HET: DNA REA BRL; 3.10A {Homo sapiens} PDB: 3dzu_A* 3e00_A* Length = 467

 Score = 44.7 bits (105), Expect = 8e-06
 Identities = 16/110 (14%), Positives = 24/110 (21%)

Query: 21  TSLACDCSNNPPPPPASKTPNCPPPPSSPSPKTPPPPPPFVKSPPPPPPVVKSAPPPPPP 80
             +     N+    P  +     P            P             +    PP   
Sbjct: 13  DKMFSTQVNSSLTSPTGRGSMAAPSLHPSLGPGIGSPGQLHSPISTLSSPINGMGPPFSV 72

Query: 81  VAKSPPPPPPVVKSPPPPIVKPPPPNGPSPKSPPPPSVRYPPPPKQQTCP 130
           ++    P    V + P        P   SP +P   S    PP       
Sbjct: 73  ISSPMGPHSMSVPTTPTLGFSTGSPQLSSPMNPVSSSEDIKPPLGLNGVL 122

>3dzy_A Retinoic acid receptor RXR-alpha; DNA-binding, HOST-virus interaction, metal-binding, nucleus, receptor, transcription, transcription regulation, zinc-FIN activator; HET: DNA REA BRL; 3.10A {Homo sapiens} PDB: 3dzu_A* 3e00_A* Length = 467

 Score = 43.2 bits (101), Expect = 3e-05
 Identities = 20/106 (18%), Positives = 27/106 (25%), Gaps = 2/106 (1%)

Query: 28  SNNPPPPPASKTP--NCPPPPSSPSPKTPPPPPPFVKSPPPPPPVVKSAPPPPPPVAKSP 85
           S +P   P   +P     P  +  SP     PP  V S P  P  +     P    +   
Sbjct: 37  SLHPSLGPGIGSPGQLHSPISTLSSPINGMGPPFSVISSPMGPHSMSVPTTPTLGFSTGS 96

Query: 86  PPPPPVVKSPPPPIVKPPPPNGPSPKSPPPPSVRYPPPPKQQTCPI 131
           P     +          PP         P           +  C I
Sbjct: 97  PQLSSPMNPVSSSEDIKPPLGLNGVLKVPAHPSGNMASFTKHICAI 142

>3dzy_A Retinoic acid receptor RXR-alpha; DNA-binding, HOST-virus interaction, metal-binding, nucleus, receptor, transcription, transcription regulation, zinc-FIN activator; HET: DNA REA BRL; 3.10A {Homo sapiens} PDB: 3dzu_A* 3e00_A* Length = 467

 Score = 41.2 bits (96), Expect = 1e-04
 Identities = 21/131 (16%), Positives = 31/131 (23%), Gaps = 1/131 (0%)

Query: 29  NNPPPPPASKTPNCPPPPSSPSPKTPPPPPPFVKSPPPPPPVVKSAPPPPPPVAKSPPPP 88
           ++          +   P    S   P   P        P  +         P+     PP
Sbjct: 11  DDDKMFSTQVNSSLTSPTGRGSMAAPSLHPSLGPGIGSPGQLHSPISTLSSPIN-GMGPP 69

Query: 89  PPVVKSPPPPIVKPPPPNGPSPKSPPPPSVRYPPPPKQQTCPIDALKLGACVDVLGGLIH 148
             V+ SP  P     P       S   P +  P  P   +  I        V  +     
Sbjct: 70  FSVISSPMGPHSMSVPTTPTLGFSTGSPQLSSPMNPVSSSEDIKPPLGLNGVLKVPAHPS 129

Query: 149 IGLGDSAKEKC 159
             +    K  C
Sbjct: 130 GNMASFTKHIC 140

>3dzy_A Retinoic acid receptor RXR-alpha; DNA-binding, HOST-virus interaction, metal-binding, nucleus, receptor, transcription, transcription regulation, zinc-FIN activator; HET: DNA REA BRL; 3.10A {Homo sapiens} PDB: 3dzu_A* 3e00_A* Length = 467

 Score = 39.7 bits (92), Expect = 4e-04
 Identities = 17/100 (17%), Positives = 26/100 (26%), Gaps = 4/100 (4%)

Query: 31  PPPPPASKTPNCPPPPSSPSPKTPPPPPPFVKSPPPPPPVVKSAPPPPPPVAKSPPPPPP 90
                  K  +     S  SP           +P   P +      P    +       P
Sbjct: 7   HHVDDDDKMFSTQVNSSLTSPTGRGSMA----APSLHPSLGPGIGSPGQLHSPISTLSSP 62

Query: 91  VVKSPPPPIVKPPPPNGPSPKSPPPPSVRYPPPPKQQTCP 130
           +    PP  V   P    S   P  P++ +     Q + P
Sbjct: 63  INGMGPPFSVISSPMGPHSMSVPTTPTLGFSTGSPQLSSP 102

>2h8h_A Proto-oncogene tyrosine-protein kinase SRC; SRC kinase, transferase; HET: PTR H8H; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 Length = 535

 Score = 44.1 bits (104), Expect = 1e-05
 Identities = 11/92 (11%), Positives = 20/92 (21%), Gaps = 5/92 (5%)

Query: 27  CSNNPPPPPASKTPNCPPPPSSPSPKTPPPPPPFVKSPPPPPPVVKSAPPPPPPVAKSPP 86
            + + P   + +  +  P  +         P     S P      +       P A  P 
Sbjct: 2   SNKSKPKDASQRRRSLEPAENVHGAGGGAFPASQTPSKPASADGHRGPSAAFAPAAAEPK 61

Query: 87  PPPPVVKSPPPPIVKPPPPNGPSPKSPPPPSV 118
                  S          P    P +    + 
Sbjct: 62  LFGGFNSSDTVT-----SPQRAGPLAGGVTTF 88

>3dva_I Dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase...; oxidoreductase, multienzyme complex; HET: TPW; 2.35A {Bacillus stearothermophilus} PDB: 3dv0_I* 3duf_I* 1b5s_A 1lab_A 1lac_A 1w3d_A Length = 428

 Score = 43.8 bits (104), Expect = 2e-05
 Identities = 8/59 (13%), Positives = 12/59 (20%)

Query: 61  VKSPPPPPPVVKSAPPPPPPVAKSPPPPPPVVKSPPPPIVKPPPPNGPSPKSPPPPSVR 119
                      +                   V +  P         GP+ +    PSVR
Sbjct: 78  APGYENMTFKGQEQEEAKKEEKTETVSKEEKVDAVAPNAPAAEAEAGPNRRVIAMPSVR 136

>3dva_I Dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase...; oxidoreductase, multienzyme complex; HET: TPW; 2.35A {Bacillus stearothermophilus} PDB: 3dv0_I* 3duf_I* 1b5s_A 1lab_A 1lac_A 1w3d_A Length = 428

 Score = 39.1 bits (92), Expect = 5e-04
 Identities = 6/52 (11%), Positives = 10/52 (19%)

Query: 44  PPPSSPSPKTPPPPPPFVKSPPPPPPVVKSAPPPPPPVAKSPPPPPPVVKSP 95
              +    +                  V +  P  P       P   V+  P
Sbjct: 82  ENMTFKGQEQEEAKKEEKTETVSKEEKVDAVAPNAPAAEAEAGPNRRVIAMP 133

>3dva_I Dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase...; oxidoreductase, multienzyme complex; HET: TPW; 2.35A {Bacillus stearothermophilus} PDB: 3dv0_I* 3duf_I* 1b5s_A 1lab_A 1lac_A 1w3d_A Length = 428

 Score = 39.1 bits (92), Expect = 6e-04
 Identities = 10/69 (14%), Positives = 14/69 (20%), Gaps = 5/69 (7%)

Query: 17  GTLLTSLACDCSNNPPPPPASKTPNCPPPPSSPSPKTPPPPPPFVKSPPPPPPVVKSAPP 76
           G  L +L      N                              V +  P  P  ++   
Sbjct: 70  GQTLITLDAPGYENMTFKGQE-----QEEAKKEEKTETVSKEEKVDAVAPNAPAAEAEAG 124

Query: 77  PPPPVAKSP 85
           P   V   P
Sbjct: 125 PNRRVIAMP 133

>2z73_A Rhodopsin; visual pigment, GQ-type, G-protein coupled receptor, chromophore, glycoprotein, lipoprotein, membrane, palmitate phosphorylation; HET: BOG RET PLM TWT PC1; 2.50A {Todarodes pacificus} PDB: 3aym_A* 3ayn_A* 2ziy_A* Length = 448

 Score = 43.0 bits (101), Expect = 3e-05
 Identities = 25/121 (20%), Positives = 34/121 (28%), Gaps = 7/121 (5%)

Query: 16  LGTLLTSLACDCSNNPPPPPASKTPNCPPPPSSPSPKTPPPPPPFVKSPP--PPPPVVKS 73
           +      +   C  +       K      P    S   P      +K           + 
Sbjct: 326 ISQTFPWVLTCCQFDDKETEDDKDAETEIPAGESSDAAPSADAAQMKEMMAMMQKMQQQQ 385

Query: 74  APPPPPPVAKSPPPPPPVVKSPPPPIVKPPPPNGPSPKSPPPPSVRYPPPPKQQTCPIDA 133
           A  PP   A  P   PP  +  PP   +  PP G  P+  PPP    PP       P   
Sbjct: 386 AAYPPQGYAPPPQGYPP--QGYPP---QGYPPQGYPPQGYPPPPQGAPPQGAPPAAPPQG 440

Query: 134 L 134
           +
Sbjct: 441 V 441

>2yew_A Capsid protein, coat protein; alphavirus, molecular dynamics; 5.00A {Barmah forest virus} Length = 253

 Score = 42.7 bits (100), Expect = 3e-05
 Identities = 15/85 (17%), Positives = 23/85 (27%)

Query: 43  PPPPSSPSPKTPPPPPPFVKSPPPPPPVVKSAPPPPPPVAKSPPPPPPVVKSPPPPIVKP 102
                 P+P     P P   +PP               +      P    K       K 
Sbjct: 10  YGRRWRPAPVQRYIPQPQPPAPPRRRRGPSQLQQLVAALGALALQPKQKQKRAQKKPKKT 69

Query: 103 PPPNGPSPKSPPPPSVRYPPPPKQQ 127
           PPP     + P  P+ +    P ++
Sbjct: 70  PPPKPKKTQKPKKPTQKKKSKPGKR 94

>2yew_A Capsid protein, coat protein; alphavirus, molecular dynamics; 5.00A {Barmah forest virus} Length = 253

 Score = 41.2 bits (96), Expect = 9e-05
 Identities = 16/98 (16%), Positives = 22/98 (22%), Gaps = 4/98 (4%)

Query: 32  PPPPASKTPNCPPPPSSPSPKTPPPPPPFVKSPPPPPPVVKSAPPPPPPVAKSPPPPPPV 91
           P          P P     P+  PP PP  +  P     + +A        K        
Sbjct: 5   PTQTFYGRRWRPAPVQRYIPQPQPPAPPRRRRGPSQLQQLVAALGALALQPKQKQKRAQK 64

Query: 92  VKSPPPPIVKPPPPNGPSPKSPPPPSVRYPPPPKQQTC 129
                PP           P           P  + + C
Sbjct: 65  KPKKTPPPKPKKTQKPKKPTQKKKS----KPGKRMRNC 98

>2yew_A Capsid protein, coat protein; alphavirus, molecular dynamics; 5.00A {Barmah forest virus} Length = 253

 Score = 39.2 bits (91), Expect = 4e-04
 Identities = 15/85 (17%), Positives = 21/85 (24%), Gaps = 3/85 (3%)

Query: 46  PSSPSPKTPPPPPPFVKSPPPPPPVVKSAPPPPPPVAKSPPPPPPVVKSPPPPIVKPPPP 105
           P+         P P        P     APP               + +      +    
Sbjct: 5   PTQTFYGRRWRPAP---VQRYIPQPQPPAPPRRRRGPSQLQQLVAALGALALQPKQKQKR 61

Query: 106 NGPSPKSPPPPSVRYPPPPKQQTCP 130
               PK  PPP  +    PK+ T  
Sbjct: 62  AQKKPKKTPPPKPKKTQKPKKPTQK 86

>2yew_A Capsid protein, coat protein; alphavirus, molecular dynamics; 5.00A {Barmah forest virus} Length = 253

 Score = 38.8 bits (90), Expect = 5e-04
 Identities = 14/92 (15%), Positives = 19/92 (20%)

Query: 30  NPPPPPASKTPNCPPPPSSPSPKTPPPPPPFVKSPPPPPPVVKSAPPPPPPVAKSPPPPP 89
                   +          P P  PP               + +    P    K     P
Sbjct: 7   QTFYGRRWRPAPVQRYIPQPQPPAPPRRRRGPSQLQQLVAALGALALQPKQKQKRAQKKP 66

Query: 90  PVVKSPPPPIVKPPPPNGPSPKSPPPPSVRYP 121
                P P   + P       KS P   +R  
Sbjct: 67  KKTPPPKPKKTQKPKKPTQKKKSKPGKRMRNC 98

>2uv9_A Fatty acid synthase alpha subunits; fungal, dehydratase, enoyl reductase, ketoacyl synthase, ketoacyl reductase; 3.1A {Thermomyces lanuginosus} PDB: 2uvb_A* Length = 1878

 Score = 43.4 bits (102), Expect = 3e-05
 Identities = 12/53 (22%), Positives = 16/53 (30%)

Query: 39  TPNCPPPPSSPSPKTPPPPPPFVKSPPPPPPVVKSAPPPPPPVAKSPPPPPPV 91
            P    P  +P+  +     P      P  P    AP P      +P    PV
Sbjct: 93  EPIEDEPEPTPAAASSADAAPAAAPAAPAAPAAAPAPAPASAGPAAPVQDAPV 145

>2uv9_A Fatty acid synthase alpha subunits; fungal, dehydratase, enoyl reductase, ketoacyl synthase, ketoacyl reductase; 3.1A {Thermomyces lanuginosus} PDB: 2uvb_A* Length = 1878

 Score = 41.8 bits (98), Expect = 1e-04
 Identities = 9/59 (15%), Positives = 15/59 (25%)

Query: 43  PPPPSSPSPKTPPPPPPFVKSPPPPPPVVKSAPPPPPPVAKSPPPPPPVVKSPPPPIVK 101
           P                   +  P  P   +A P P P +  P  P          +++
Sbjct: 94  PIEDEPEPTPAAASSADAAPAAAPAAPAAPAAAPAPAPASAGPAAPVQDAPVTATDVIR 152

>2uv9_A Fatty acid synthase alpha subunits; fungal, dehydratase, enoyl reductase, ketoacyl synthase, ketoacyl reductase; 3.1A {Thermomyces lanuginosus} PDB: 2uvb_A* Length = 1878

 Score = 41.1 bits (96), Expect = 2e-04
 Identities = 15/92 (16%), Positives = 23/92 (25%), Gaps = 9/92 (9%)

Query: 68  PPVVKSAPPPPPPVAKSPPPPPPVVKSPPPPIVKPPPPNGPSPKSPPPPSVRYPPPPKQQ 127
           P   +  P P    +    P         P     P P    P +P   +   P      
Sbjct: 94  PIEDEPEPTPAAASSADAAPAAAPAAPAAPAAAPAPAPASAGPAAPVQDA---PVTATDV 150

Query: 128 TCPIDALKLGACVDVLGGLIHIGLGDSAKEKC 159
              + A KL   +        I    + K+  
Sbjct: 151 IRALVAQKLKKELT------EIPPSKAIKDLV 176

>2uv9_A Fatty acid synthase alpha subunits; fungal, dehydratase, enoyl reductase, ketoacyl synthase, ketoacyl reductase; 3.1A {Thermomyces lanuginosus} PDB: 2uvb_A* Length = 1878

 Score = 41.1 bits (96), Expect = 2e-04
 Identities = 9/54 (16%), Positives = 14/54 (25%)

Query: 64  PPPPPPVVKSAPPPPPPVAKSPPPPPPVVKSPPPPIVKPPPPNGPSPKSPPPPS 117
               P    +A         + P  P    + P P      P  P   +P   +
Sbjct: 95  IEDEPEPTPAAASSADAAPAAAPAAPAAPAAAPAPAPASAGPAAPVQDAPVTAT 148

>2uv9_A Fatty acid synthase alpha subunits; fungal, dehydratase, enoyl reductase, ketoacyl synthase, ketoacyl reductase; 3.1A {Thermomyces lanuginosus} PDB: 2uvb_A* Length = 1878

 Score = 40.3 bits (94), Expect = 3e-04
 Identities = 11/52 (21%), Positives = 14/52 (26%)

Query: 53  TPPPPPPFVKSPPPPPPVVKSAPPPPPPVAKSPPPPPPVVKSPPPPIVKPPP 104
            P    P              A  P  P A +  P P    + P   V+  P
Sbjct: 93  EPIEDEPEPTPAAASSADAAPAAAPAAPAAPAAAPAPAPASAGPAAPVQDAP 144

>2uv9_A Fatty acid synthase alpha subunits; fungal, dehydratase, enoyl reductase, ketoacyl synthase, ketoacyl reductase; 3.1A {Thermomyces lanuginosus} PDB: 2uvb_A* Length = 1878

 Score = 39.5 bits (92), Expect = 5e-04
 Identities = 9/51 (17%), Positives = 13/51 (25%)

Query: 58  PPFVKSPPPPPPVVKSAPPPPPPVAKSPPPPPPVVKSPPPPIVKPPPPNGP 108
           P   +  P P     +   P    A    P      +P       P  + P
Sbjct: 94  PIEDEPEPTPAAASSADAAPAAAPAAPAAPAAAPAPAPASAGPAAPVQDAP 144

>2uv9_A Fatty acid synthase alpha subunits; fungal, dehydratase, enoyl reductase, ketoacyl synthase, ketoacyl reductase; 3.1A {Thermomyces lanuginosus} PDB: 2uvb_A* Length = 1878

 Score = 39.5 bits (92), Expect = 6e-04
 Identities = 11/54 (20%), Positives = 12/54 (22%)

Query: 49  PSPKTPPPPPPFVKSPPPPPPVVKSAPPPPPPVAKSPPPPPPVVKSPPPPIVKP 102
           P    P P P    S    P    +AP  P       P             V  
Sbjct: 94  PIEDEPEPTPAAASSADAAPAAAPAAPAAPAAAPAPAPASAGPAAPVQDAPVTA 147

>2uv9_A Fatty acid synthase alpha subunits; fungal, dehydratase, enoyl reductase, ketoacyl synthase, ketoacyl reductase; 3.1A {Thermomyces lanuginosus} PDB: 2uvb_A* Length = 1878

 Score = 39.5 bits (92), Expect = 6e-04
 Identities = 11/65 (16%), Positives = 18/65 (27%), Gaps = 5/65 (7%)

Query: 30  NPPPPPASKTPNCPPPPSSPSPKTPPPPPPFVKSPPPPPPVVKSAPPPPPPVAKSPPPPP 89
                P           ++P+     P  P     P P         P  PV  +P    
Sbjct: 94  PIEDEPEPTPAAASSADAAPAAAPAAPAAPAAAPAPAPAS-----AGPAAPVQDAPVTAT 148

Query: 90  PVVKS 94
            V+++
Sbjct: 149 DVIRA 153

>2uv8_A Fatty acid synthase subunit alpha (FAS2); fatty acid biosynthesis, malonyl/palmitoyl transferase, phosphopantetheine, transferase; HET: GVL FMN; 3.10A {Saccharomyces cerevisiae} PDB: 2vkz_A* 3hmj_A* Length = 1887

 Score = 43.0 bits (101), Expect = 4e-05
 Identities = 11/53 (20%), Positives = 16/53 (30%)

Query: 39  TPNCPPPPSSPSPKTPPPPPPFVKSPPPPPPVVKSAPPPPPPVAKSPPPPPPV 91
            P+       P+ +  P P P   +P P            P  A +     PV
Sbjct: 93  DPSELAAKEEPAKEEAPAPTPAASAPAPAAAAPAPVAAAAPAAAAAEIADEPV 145

>2uv8_A Fatty acid synthase subunit alpha (FAS2); fatty acid biosynthesis, malonyl/palmitoyl transferase, phosphopantetheine, transferase; HET: GVL FMN; 3.10A {Saccharomyces cerevisiae} PDB: 2vkz_A* 3hmj_A* Length = 1887

 Score = 42.7 bits (100), Expect = 6e-05
 Identities = 16/87 (18%), Positives = 25/87 (28%), Gaps = 6/87 (6%)

Query: 73  SAPPPPPPVAKSPPPPPPVVKSPPPPIVKPPPPNGPSPKSPPPPSVRYPPPPKQQTCPID 132
                  P  +  P P P   +P P    P P    +P +        P         + 
Sbjct: 96  ELAAKEEPAKEEAPAPTPAASAPAPAAAAPAPVAAAAPAAAAAEIADEPVKASLLLHVLV 155

Query: 133 ALKLGACVDVLGGLIHIGLGDSAKEKC 159
           A KL   +D       I +  + K+  
Sbjct: 156 AHKLKKSLD------SIPMSKTIKDLV 176

>2uv8_A Fatty acid synthase subunit alpha (FAS2); fatty acid biosynthesis, malonyl/palmitoyl transferase, phosphopantetheine, transferase; HET: GVL FMN; 3.10A {Saccharomyces cerevisiae} PDB: 2vkz_A* 3hmj_A* Length = 1887

 Score = 42.3 bits (99), Expect = 7e-05
 Identities = 8/52 (15%), Positives = 12/52 (23%)

Query: 30  NPPPPPASKTPNCPPPPSSPSPKTPPPPPPFVKSPPPPPPVVKSAPPPPPPV 81
                   +      P  +P+   P P            P   +A     PV
Sbjct: 94  PSELAAKEEPAKEEAPAPTPAASAPAPAAAAPAPVAAAAPAAAAAEIADEPV 145

>2uv8_A Fatty acid synthase subunit alpha (FAS2); fatty acid biosynthesis, malonyl/palmitoyl transferase, phosphopantetheine, transferase; HET: GVL FMN; 3.10A {Saccharomyces cerevisiae} PDB: 2vkz_A* 3hmj_A* Length = 1887

 Score = 42.3 bits (99), Expect = 7e-05
 Identities = 10/50 (20%), Positives = 11/50 (22%)

Query: 49  PSPKTPPPPPPFVKSPPPPPPVVKSAPPPPPPVAKSPPPPPPVVKSPPPP 98
           P P          K   P P    SAP P            P   +    
Sbjct: 92  PDPSELAAKEEPAKEEAPAPTPAASAPAPAAAAPAPVAAAAPAAAAAEIA 141

>2uv8_A Fatty acid synthase subunit alpha (FAS2); fatty acid biosynthesis, malonyl/palmitoyl transferase, phosphopantetheine, transferase; HET: GVL FMN; 3.10A {Saccharomyces cerevisiae} PDB: 2vkz_A* 3hmj_A* Length = 1887

 Score = 40.3 bits (94), Expect = 3e-04
 Identities = 10/56 (17%), Positives = 13/56 (23%), Gaps = 4/56 (7%)

Query: 53  TPPPPPPFVKSPPPPPPVVKSAPPPPPPVAKSPPPPPPVVKSPPPPIVKPPPPNGP 108
            P       +      P    A   P P A +P P         P        + P
Sbjct: 93  DPSELAAKEEPAKEEAPAPTPAASAPAPAAAAPAPVAA----AAPAAAAAEIADEP 144

>2uv8_A Fatty acid synthase subunit alpha (FAS2); fatty acid biosynthesis, malonyl/palmitoyl transferase, phosphopantetheine, transferase; HET: GVL FMN; 3.10A {Saccharomyces cerevisiae} PDB: 2vkz_A* 3hmj_A* Length = 1887

 Score = 40.3 bits (94), Expect = 3e-04
 Identities = 10/59 (16%), Positives = 14/59 (23%)

Query: 77  PPPPVAKSPPPPPPVVKSPPPPIVKPPPPNGPSPKSPPPPSVRYPPPPKQQTCPIDALK 135
           P    AK  P         P      P    P+P +   P+        +       L 
Sbjct: 94  PSELAAKEEPAKEEAPAPTPAASAPAPAAAAPAPVAAAAPAAAAAEIADEPVKASLLLH 152

>2uv8_A Fatty acid synthase subunit alpha (FAS2); fatty acid biosynthesis, malonyl/palmitoyl transferase, phosphopantetheine, transferase; HET: GVL FMN; 3.10A {Saccharomyces cerevisiae} PDB: 2vkz_A* 3hmj_A* Length = 1887

 Score = 39.6 bits (92), Expect = 5e-04
 Identities = 9/55 (16%), Positives = 13/55 (23%)

Query: 64  PPPPPPVVKSAPPPPPPVAKSPPPPPPVVKSPPPPIVKPPPPNGPSPKSPPPPSV 118
           P       + A    P    +   P P   +P P     P          P  + 
Sbjct: 94  PSELAAKEEPAKEEAPAPTPAASAPAPAAAAPAPVAAAAPAAAAAEIADEPVKAS 148

>2uv8_A Fatty acid synthase subunit alpha (FAS2); fatty acid biosynthesis, malonyl/palmitoyl transferase, phosphopantetheine, transferase; HET: GVL FMN; 3.10A {Saccharomyces cerevisiae} PDB: 2vkz_A* 3hmj_A* Length = 1887

 Score = 39.6 bits (92), Expect = 6e-04
 Identities = 10/51 (19%), Positives = 14/51 (27%)

Query: 39  TPNCPPPPSSPSPKTPPPPPPFVKSPPPPPPVVKSAPPPPPPVAKSPPPPP 89
           TP+     +   P     P P   +  P P     AP      A +     
Sbjct: 91  TPDPSELAAKEEPAKEEAPAPTPAASAPAPAAAAPAPVAAAAPAAAAAEIA 141

>2uv8_A Fatty acid synthase subunit alpha (FAS2); fatty acid biosynthesis, malonyl/palmitoyl transferase, phosphopantetheine, transferase; HET: GVL FMN; 3.10A {Saccharomyces cerevisiae} PDB: 2vkz_A* 3hmj_A* Length = 1887

 Score = 39.2 bits (91), Expect = 8e-04
 Identities = 11/63 (17%), Positives = 19/63 (30%), Gaps = 3/63 (4%)

Query: 32  PPPPASKTPNCPPPPSSPSPKTPPPPPPFVKSPPPPPPVVKSAPPPPPPVAKSPPPPPPV 91
           P   A+K         +P+P    P P    +  P P    +       +A  P     +
Sbjct: 94  PSELAAKEEPAKEEAPAPTPAASAPAPA---AAAPAPVAAAAPAAAAAEIADEPVKASLL 150

Query: 92  VKS 94
           +  
Sbjct: 151 LHV 153

>2uv8_A Fatty acid synthase subunit alpha (FAS2); fatty acid biosynthesis, malonyl/palmitoyl transferase, phosphopantetheine, transferase; HET: GVL FMN; 3.10A {Saccharomyces cerevisiae} PDB: 2vkz_A* 3hmj_A* Length = 1887

 Score = 38.8 bits (90), Expect = 8e-04
 Identities = 11/57 (19%), Positives = 18/57 (31%), Gaps = 3/57 (5%)

Query: 49  PSPKTPPPPPPFVKSPPPPPPVVKSAPPPPPPVAKSPPPPPPVVKSPPPPIVKPPPP 105
           PS       P   ++P P P    ++ P P   A +P        +      +P   
Sbjct: 94  PSELAAKEEPAKEEAPAPTPA---ASAPAPAAAAPAPVAAAAPAAAAAEIADEPVKA 147

>2iut_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- cell division, DNA translocation, KOPS, membrane; HET: DNA SAP; 2.25A {Pseudomonas aeruginosa} PDB: 2iuu_A* Length = 574

 Score = 42.4 bits (100), Expect = 5e-05
 Identities = 14/87 (16%), Positives = 25/87 (28%), Gaps = 2/87 (2%)

Query: 51  PKTPPPPPPFVKSPPPPPPVVKSAPPPPPPVAKSPPPPPPVVKSPPPPIVKPPPPNGPSP 110
            +        ++        +      PPP    PP P     S      K  P    + 
Sbjct: 6   REQSKAKERLLEREEALAKHMSEREKRPPPKIDPPPSPKAPEPSKRVLKEKQAPLFVDTA 65

Query: 111 KSPPPPSVRY--PPPPKQQTCPIDALK 135
                P +    P   KQ++   ++L+
Sbjct: 66  VEGTLPPLSLLDPAEVKQKSYSPESLE 92

>2iut_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- cell division, DNA translocation, KOPS, membrane; HET: DNA SAP; 2.25A {Pseudomonas aeruginosa} PDB: 2iuu_A* Length = 574

 Score = 40.8 bits (96), Expect = 2e-04
 Identities = 12/78 (15%), Positives = 18/78 (23%)

Query: 32  PPPPASKTPNCPPPPSSPSPKTPPPPPPFVKSPPPPPPVVKSAPPPPPPVAKSPPPPPPV 91
                 +        +    +    PPP +  PP P     S        A         
Sbjct: 8   QSKAKERLLEREEALAKHMSEREKRPPPKIDPPPSPKAPEPSKRVLKEKQAPLFVDTAVE 67

Query: 92  VKSPPPPIVKPPPPNGPS 109
              PP  ++ P      S
Sbjct: 68  GTLPPLSLLDPAEVKQKS 85

>1x9d_A Endoplasmic reticulum mannosyl-oligosaccharide 1, 2-alpha-mannosidase; substrate analogue, glycosyl hydrolase; HET: SMD; 1.41A {Homo sapiens} SCOP: a.102.2.1 PDB: 1fo3_A* 1fo2_A* 1fmi_A Length = 538

 Score = 41.5 bits (97), Expect = 1e-04
 Identities = 13/73 (17%), Positives = 19/73 (26%), Gaps = 1/73 (1%)

Query: 28 SNNPPPPPASKTPNCPPPPSSPSPKTPPPPPPFV-KSPPPPPPVVKSAPPPPPPVAKSPP 86
          S +       +       P  P P+  P       +     P      P     V   PP
Sbjct: 13 SQDLKDGTQEEATKRQEAPVDPRPEGDPQRTVISWRGAVIEPEQGTELPSRRAEVPTKPP 72

Query: 87 PPPPVVKSPPPPI 99
           PP   +  P  +
Sbjct: 73 LPPARTQGTPVHL 85

>1x9d_A Endoplasmic reticulum mannosyl-oligosaccharide 1, 2-alpha-mannosidase; substrate analogue, glycosyl hydrolase; HET: SMD; 1.41A {Homo sapiens} SCOP: a.102.2.1 PDB: 1fo3_A* 1fo2_A* 1fmi_A Length = 538

 Score = 41.5 bits (97), Expect = 1e-04
 Identities = 15/80 (18%), Positives = 22/80 (27%), Gaps = 4/80 (5%)

Query: 43  PPPPSSPSPKTPPPPPPFVKSPPPPPPVVKSAPPPPPPVAKSPPPPPPVVKSPPPPIVKP 102
            PP       T        ++P  P P  +  P       +     P      P    + 
Sbjct: 10  DPPSQDLKDGTQEEATKRQEAPVDPRP--EGDPQRTVISWRGAVIEPEQGTELPSRRAEV 67

Query: 103 P--PPNGPSPKSPPPPSVRY 120
           P  PP  P+     P  + Y
Sbjct: 68  PTKPPLPPARTQGTPVHLNY 87

>1x9d_A Endoplasmic reticulum mannosyl-oligosaccharide 1, 2-alpha-mannosidase; substrate analogue, glycosyl hydrolase; HET: SMD; 1.41A {Homo sapiens} SCOP: a.102.2.1 PDB: 1fo3_A* 1fo2_A* 1fmi_A Length = 538

 Score = 40.4 bits (94), Expect = 2e-04
 Identities = 12/79 (15%), Positives = 21/79 (26%), Gaps = 4/79 (5%)

Query: 33  PPPASKTPNCPPPPSSPSPKTPPPPPPFVKSPPPPPPVVKSAPPPPPPVAKSPPPPPPVV 92
            PP+    +     ++   + P  P P  +  P    +        P        P    
Sbjct: 10  DPPSQDLKDGTQEEATKRQEAPVDPRP--EGDPQRTVISWRGAVIEPEQ--GTELPSRRA 65

Query: 93  KSPPPPIVKPPPPNGPSPK 111
           + P  P + P    G    
Sbjct: 66  EVPTKPPLPPARTQGTPVH 84

>1x9d_A Endoplasmic reticulum mannosyl-oligosaccharide 1, 2-alpha-mannosidase; substrate analogue, glycosyl hydrolase; HET: SMD; 1.41A {Homo sapiens} SCOP: a.102.2.1 PDB: 1fo3_A* 1fo2_A* 1fmi_A Length = 538

 Score = 40.0 bits (93), Expect = 3e-04
 Identities = 14/81 (17%), Positives = 19/81 (23%), Gaps = 2/81 (2%)

Query: 49  PSPKTPPPPPPFVKSPPPPPPVVKSAPPPPPPVAKSPPPPPPVVKSPPPPIVKPPPPNG- 107
            + +  PP               + AP  P P             +   P      P+  
Sbjct: 5   LTCRLDPPSQDLKDGTQEEATKRQEAPVDPRPEGDPQRTVISWRGAVIEPEQGTELPSRR 64

Query: 108 -PSPKSPPPPSVRYPPPPKQQ 127
              P  PP P  R    P   
Sbjct: 65  AEVPTKPPLPPARTQGTPVHL 85

>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis} Length = 681

 Score = 41.4 bits (97), Expect = 1e-04
 Identities = 7/80 (8%), Positives = 15/80 (18%)

Query: 45  PPSSPSPKTPPPPPPFVKSPPPPPPVVKSAPPPPPPVAKSPPPPPPVVKSPPPPIVKPPP 104
              +     P P    + SP      V                   +  +     +  P 
Sbjct: 329 EVVAQDTGVPRPGLSTIFSPSRSTFGVDLLVAHTDVYLDGQVHAEKLTANEIVTALSVPL 388

Query: 105 PNGPSPKSPPPPSVRYPPPP 124
            +     +    +     P 
Sbjct: 389 VDPTDVAASVLQATVLSQPV 408

>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis} Length = 681

 Score = 41.0 bits (96), Expect = 2e-04
 Identities = 7/96 (7%), Positives = 16/96 (16%)

Query: 31  PPPPPASKTPNCPPPPSSPSPKTPPPPPPFVKSPPPPPPVVKSAPPPPPPVAKSPPPPPP 90
             P P   T   P   +            ++        +  +       V    P    
Sbjct: 336 GVPRPGLSTIFSPSRSTFGVDLLVAHTDVYLDGQVHAEKLTANEIVTALSVPLVDPTDVA 395

Query: 91  VVKSPPPPIVKPPPPNGPSPKSPPPPSVRYPPPPKQ 126
                   + +P         +             +
Sbjct: 396 ASVLQATVLSQPVQTLDSLRAARHGALDADGVDFSE 431

>2wvr_C DNA replication factor CDT1; DNA replication license, DNA replication inhibitor, phosphoprotein, UBL conjugation, DNA-binding, polymorphism; HET: DNA; 3.30A {Homo sapiens} PDB: 2klo_A* Length = 546

 Score = 40.5 bits (93), Expect = 2e-04
 Identities = 19/105 (18%), Positives = 25/105 (23%)

Query: 31  PPPPPASKTPNCPPPPSSPSPKTPPPPPPFVKSPPPPPPVVKSAPPPPPPVAKSPPPPPP 90
           PP     K     P P+ P+ + P       +    PP         PP   +       
Sbjct: 17  PPRIAPPKLACRTPSPARPALRAPASATSGSRKRARPPAAPGRDQARPPARRRLRLSVDE 76

Query: 91  VVKSPPPPIVKPPPPNGPSPKSPPPPSVRYPPPPKQQTCPIDALK 135
           V     P     P    P  K          PP        D + 
Sbjct: 77  VSSPSTPEAPDIPACPSPGQKIKKSTPAAGQPPHLTSAQDQDTIS 121

>2wvr_C DNA replication factor CDT1; DNA replication license, DNA replication inhibitor, phosphoprotein, UBL conjugation, DNA-binding, polymorphism; HET: DNA; 3.30A {Homo sapiens} PDB: 2klo_A* Length = 546

 Score = 40.1 bits (92), Expect = 3e-04
 Identities = 23/112 (20%), Positives = 32/112 (28%)

Query: 32  PPPPASKTPNCPPPPSSPSPKTPPPPPPFVKSPPPPPPVVKSAPPPPPPVAKSPPPPPPV 91
            P PA      P   +S S K   PP    +    PP   +         + S P  P +
Sbjct: 29  TPSPARPALRAPASATSGSRKRARPPAAPGRDQARPPARRRLRLSVDEVSSPSTPEAPDI 88

Query: 92  VKSPPPPIVKPPPPNGPSPKSPPPPSVRYPPPPKQQTCPIDALKLGACVDVL 143
              P P                   +       +  +C   A +LGA V  L
Sbjct: 89  PACPSPGQKIKKSTPAAGQPPHLTSAQDQDTISELASCLQRARELGARVRAL 140

>2wvr_C DNA replication factor CDT1; DNA replication license, DNA replication inhibitor, phosphoprotein, UBL conjugation, DNA-binding, polymorphism; HET: DNA; 3.30A {Homo sapiens} PDB: 2klo_A* Length = 546

 Score = 40.1 bits (92), Expect = 3e-04
 Identities = 15/108 (13%), Positives = 25/108 (23%)

Query: 28  SNNPPPPPASKTPNCPPPPSSPSPKTPPPPPPFVKSPPPPPPVVKSAPPPPPPVAKSPPP 87
           S     PPA+   +   PP+    +          +P  P      +P      +     
Sbjct: 47  SRKRARPPAAPGRDQARPPARRRLRLSVDEVSSPSTPEAPDIPACPSPGQKIKKSTPAAG 106

Query: 88  PPPVVKSPPPPIVKPPPPNGPSPKSPPPPSVRYPPPPKQQTCPIDALK 135
            PP + S           +           VR      Q        +
Sbjct: 107 QPPHLTSAQDQDTISELASCLQRARELGARVRALKASAQDAGESCTPE 154

>3tx7_B Nuclear receptor subfamily 5 group A member 2; LRH-1, beta-catenin, armadillo repeat, nuclear receptor LIGA binding domain, protein binding; HET: P6L; 2.76A {Homo sapiens} Length = 352

 Score = 40.4 bits (94), Expect = 2e-04
 Identities = 14/89 (15%), Positives = 21/89 (23%)

Query: 29  NNPPPPPASKTPNCPPPPSSPSPKTPPPPPPFVKSPPPPPPVVKSAPPPPPPVAKSPPPP 88
            N          N    P +   ++P    P   + PP   +         P        
Sbjct: 25  QNIHSASKGLPLNHAALPPTDYDRSPFVTSPISMTMPPHGSLQGYQTYGHFPSRAIKSEY 84

Query: 89  PPVVKSPPPPIVKPPPPNGPSPKSPPPPS 117
           P    S P  I+     +     SP    
Sbjct: 85  PDPYTSSPESIMGYSYMDSYQTSSPASIP 113

>3a58_A Exocyst complex component SEC3; protein complex, PH domain, GTPase, membrane traffic, coiled coil, exocytosis, phosphoprotein; HET: GNP; 2.60A {Saccharomyces cerevisiae} Length = 320

 Score = 39.5 bits (91), Expect = 4e-04
 Identities = 12/76 (15%), Positives = 19/76 (25%)

Query: 31  PPPPPASKTPNCPPPPSSPSPKTPPPPPPFVKSPPPPPPVVKSAPPPPPPVAKSPPPPPP 90
                 +  P    P  SP+          V S P   P  ++       V     P   
Sbjct: 243 YQRAVITNRPGSVSPIKSPTSNFTTNTTQSVGSVPFSAPTERTRRSETESVNPVSTPASV 302

Query: 91  VVKSPPPPIVKPPPPN 106
              +    + K P  +
Sbjct: 303 EYHAGMKSLNKAPYSS 318

>3a58_A Exocyst complex component SEC3; protein complex, PH domain, GTPase, membrane traffic, coiled coil, exocytosis, phosphoprotein; HET: GNP; 2.60A {Saccharomyces cerevisiae} Length = 320

 Score = 39.1 bits (90), Expect = 5e-04
 Identities = 8/76 (10%), Positives = 13/76 (17%)

Query: 49  PSPKTPPPPPPFVKSPPPPPPVVKSAPPPPPPVAKSPPPPPPVVKSPPPPIVKPPPPNGP 108
                         S  P      +          S P   P  ++         P + P
Sbjct: 240 ERSYQRAVITNRPGSVSPIKSPTSNFTTNTTQSVGSVPFSAPTERTRRSETESVNPVSTP 299

Query: 109 SPKSPPPPSVRYPPPP 124
           +              P
Sbjct: 300 ASVEYHAGMKSLNKAP 315

>3a58_A Exocyst complex component SEC3; protein complex, PH domain, GTPase, membrane traffic, coiled coil, exocytosis, phosphoprotein; HET: GNP; 2.60A {Saccharomyces cerevisiae} Length = 320

 Score = 39.1 bits (90), Expect = 5e-04
 Identities = 11/75 (14%), Positives = 16/75 (21%)

Query: 43  PPPPSSPSPKTPPPPPPFVKSPPPPPPVVKSAPPPPPPVAKSPPPPPPVVKSPPPPIVKP 102
               ++      P   P           V S P   P           V     P  V+ 
Sbjct: 245 RAVITNRPGSVSPIKSPTSNFTTNTTQSVGSVPFSAPTERTRRSETESVNPVSTPASVEY 304

Query: 103 PPPNGPSPKSPPPPS 117
                   K+P   +
Sbjct: 305 HAGMKSLNKAPYSSN 319

>2wd6_A Agglutinin receptor; cell adhesion, secreted, V-region, cell WALL, AG I/II protei surface adhesin, peptidoglycan-anchor; 2.30A {Streptococcus gordonii} Length = 349

 Score = 39.4 bits (91), Expect = 5e-04
 Identities = 14/48 (29%), Positives = 18/48 (37%), Gaps = 2/48 (4%)

Query: 38  KTPNCPPPPSSPSPKTPPPPPPFVKSPPPPPPVVKSAPPPPPPVAKSP 85
                P  P +P+  T P      + P  P PV  S    P P  K+P
Sbjct: 304 NAIGVPTKPVAPTAPTQPMYET--EKPLEPAPVAPSYENEPTPPVKTP 349

>2wd6_A Agglutinin receptor; cell adhesion, secreted, V-region, cell WALL, AG I/II protei surface adhesin, peptidoglycan-anchor; 2.30A {Streptococcus gordonii} Length = 349

 Score = 39.0 bits (90), Expect = 7e-04
 Identities = 14/47 (29%), Positives = 18/47 (38%), Gaps = 2/47 (4%)

Query: 71  VKSAPPPPPPVAKSPPPPPPVVKSPP--PPIVKPPPPNGPSPKSPPP 115
           + +   P  PVA + P  P      P  P  V P   N P+P    P
Sbjct: 303 INAIGVPTKPVAPTAPTQPMYETEKPLEPAPVAPSYENEPTPPVKTP 349

>2wd6_A Agglutinin receptor; cell adhesion, secreted, V-region, cell WALL, AG I/II protei surface adhesin, peptidoglycan-anchor; 2.30A {Streptococcus gordonii} Length = 349

 Score = 38.6 bits (89), Expect = 8e-04
 Identities = 11/40 (27%), Positives = 14/40 (35%)

Query: 64  PPPPPPVVKSAPPPPPPVAKSPPPPPPVVKSPPPPIVKPP 103
             P  P   + P         P P  P  ++ P P VK P
Sbjct: 310 TKPVAPTAPTQPMYETEKPLEPAPVAPSYENEPTPPVKTP 349

>2es4_D Lipase chaperone; protein-protein complex, steric chaperone, triacylglycerol hydrolase, all alpha helix protein, A/B hydrolase fold; 1.85A {Burkholderia glumae} SCOP: a.137.15.1 Length = 332

 Score = 39.0 bits (90), Expect = 5e-04
 Identities = 11/75 (14%), Positives = 16/75 (21%), Gaps = 9/75 (12%)

Query: 73  SAPPPPPPVAKSPPPPPPVVKSPPPPIVKPPPPNGPSPKSPPPPSVRYPPPPKQQTCPID 132
                  P   + P P P       P    P     + ++  P       P         
Sbjct: 15  HIEGRHMP---AAPSPAPAGAVAGGPAAGVPAAASGAAEAAMPLP--AALPGALAGSHAP 69

Query: 133 ALKLGACVDVLGGLI 147
            L     +   G L 
Sbjct: 70  RLP----LAAGGRLA 80

>3h0g_A DNA-directed RNA polymerase II subunit RPB1; transcription, multi-protein complex, DNA- binding, magnesium; 3.65A {Schizosaccharomyces pombe} Length = 1752

 Score = 39.7 bits (92), Expect = 5e-04
 Identities = 31/98 (31%), Positives = 37/98 (37%), Gaps = 6/98 (6%)

Query: 28   SNNPPPPPASKT-PNCPPPPSSPSPKTPPPPPPFVKSPPPPPPVVKSAPPPPPPVAKSPP 86
            S +P  P  S T P+  P   S SP +P   P      P  P    ++P   P      P
Sbjct: 1626 SYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSP 1685

Query: 87   PPPPVVKSPPPPIVKPPPPNGPSPKSP--PPPSVRYPP 122
              P    SP  P   P  P+  SP SP   P S  Y P
Sbjct: 1686 TSPS--YSPTSPSYSPTSPSY-SPTSPSYSPTSPSYSP 1720

>3h0g_A DNA-directed RNA polymerase II subunit RPB1; transcription, multi-protein complex, DNA- binding, magnesium; 3.65A {Schizosaccharomyces pombe} Length = 1752

 Score = 39.3 bits (91), Expect = 6e-04
 Identities = 24/125 (19%), Positives = 37/125 (29%), Gaps = 10/125 (8%)

Query: 9    SFILLLNLGTLLTSLACDCSNNPPPPPASKTPNCPPPPSSPSPKTPPPPPPFVKSPPPPP 68
            +F + L+   +L + +   +          T   P    +P  ++P     FV SP    
Sbjct: 1446 AFDIYLDQ-DMLMNYSLGTAVPTLAGSGMGTSQLPEGAGTPYERSPMVDSGFVGSPDAAA 1504

Query: 69   --PVVKSAPPPPPPV-------AKSPPPPPPVVKSPPPPIVKPPPPNGPSPKSPPPPSVR 119
              P+V+                A SP           P      P  G +  S  P S  
Sbjct: 1505 FSPLVQGGSEGREGFGDYGLLGAASPYKGVQSPGYTSPFSSAMSPGYGLTSPSYSPSSPG 1564

Query: 120  YPPPP 124
            Y   P
Sbjct: 1565 YSTSP 1569

>1twf_A B220, DNA-directed RNA polymerase II largest subunit; transcription, mRNA, multiprotein complex; HET: UTP; 2.30A {Saccharomyces cerevisiae} SCOP: e.29.1.2 PDB: 1i3q_A 1i6h_A 1k83_A* 1nik_A 1nt9_A 1pqv_A 1r5u_A 1r9s_A* 1r9t_A* 1sfo_A* 1twa_A* 1twc_A* 1i50_A* 1twg_A* 1twh_A* 1wcm_A 1y1v_A 1y1w_A 1y1y_A 1y77_A* ... Length = 1733

 Score = 39.3 bits (91), Expect = 6e-04
 Identities = 18/98 (18%), Positives = 23/98 (23%), Gaps = 5/98 (5%)

Query: 30   NPPPPPASKTPNCPPPPSSPSPKTPPPPPPFVKSPPPPPPVVKSAPPPPPPVAKSPPPPP 89
            N      +          SP   +                    A  P     ++P  P 
Sbjct: 1475 NESGLVNADLDVKDELMFSPLVDSGSNDAMAGGFTAYGGADYGEATSPFGAYGEAPTSPG 1534

Query: 90   PVVKSPP-----PPIVKPPPPNGPSPKSPPPPSVRYPP 122
              V SP      P      P   P+  S  P S  Y P
Sbjct: 1535 FGVSSPGFSPTSPTYSPTSPAYSPTSPSYSPTSPSYSP 1572

>2vg3_A Undecaprenyl pyrophosphate synthetase; transferase, cell WALL biogenesis/degradation, cell cycle, P transferase; HET: GPP; 1.8A {Mycobacterium tuberculosis} PDB: 2vg2_A* 2vg4_A Length = 284

 Score = 38.7 bits (91), Expect = 7e-04
 Identities = 13/48 (27%), Positives = 16/48 (33%)

Query: 33 PPPASKTPNCPPPPSSPSPKTPPPPPPFVKSPPPPPPVVKSAPPPPPP 80
          PP     P  P   + P      P  P+     PP    K+A P  P 
Sbjct: 5  PPAPDDYPTFPDTSTWPVVFPELPAAPYGGPCRPPQHTSKAAAPRIPA 52

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	214
1hyp_A	80	Hydrophobic protein from soybean; hydrophobic SEED	99.96
1l6h_A	69	LTP2, non-specific lipid transfer protein; NSLTP2,	96.26
1n89_A	67	Lipid transfer protein; lipid transport; HET: PGM;	96.17
2rkn_A	77	DIR1 protein, AT5G48485; LTP, defense signaling pr	95.62
2ljo_A	93	Non-specific lipid-transfer protein 2; lipid trans	94.16
1siy_A	91	LTP 1, NS-LTP1, nonspecific lipid-transfer protein	93.63
2alg_A	92	Non-specific lipid transfer protein; LTP, NS-LTP,	93.09
1bwo_A	90	NS-LTP1, nonspecific lipid-transfer protein; wheat	92.84
1afh_A	93	Maize nonspecific lipid transfer protein; lipid-bi	92.72
1t12_A	91	LTP 1, nonspecific lipid-transfer protein 1; cyste	91.33

>1hyp_A Hydrophobic protein from soybean; hydrophobic SEED protein; 1.80A {Glycine max} SCOP: a.52.1.1

Probab=99.96  E-value=2.6e-30  Score=194.46  Aligned_cols=75  Identities=43%  Similarity=1.021  Sum_probs=67.1

Q ss_pred             CCCCCccccCccccccccccccccccCCCCCCCCchhhhccccccchhhhhHHHhhhhccccccccchhhHHHhhhcCCC
Q 028062          126 QQTCPIDALKLGACVDVLGGLIHIGLGDSAKEKCCPLLQGLADLDAAVCLCTAIRLKALNLINLLVPISLQVLVNDCGKY  205 (214)
Q Consensus       126 ~~tCP~DaLKLgvCanVLgGLv~~~lG~P~~~pCCpLI~GLaDldAAvCLCtAIKAnVLGlInlniPi~L~lLLN~CGK~  205 (214)
                      .++||    |||+|+|||||++    |  .+++||++|+||+|+|||+|||||||  +|| | +|++++|++|+|.|||+
T Consensus         5 ~~~CP----kLgvCanvL~g~~----~--~~~~CC~Ll~GL~dleAAvCLCtaik--~Lg-i-lnlpv~L~llln~Cgk~   70 (80)
T 1hyp_A            5 RPSCP----DLSICLNILGGSL----G--TVDDCCALIGGLGDIEAIVCLCIQLR--ALG-I-LNLNRNLQLILNSCGRS   70 (80)
T ss_dssp             -CCSC----CCGGGGGGGGTCC----T--THHHHHHHHHTSCHHHHHHHHHHHHH--HHT-C-SCHHHHHHHHHHHTTCS
T ss_pred             CCCCC----chhHHHHHhCcCC----C--CCCccchhhhCcchhhhhhhhhhhcc--ccc-e-eecChhHHHHHHHhCCc
Confidence            46799    8999999998653    2  56789999999999999999999999  499 7 89999999999999999


Q ss_pred             CCCCCcCCC
Q 028062          206 PPAGFQCPA  214 (214)
Q Consensus       206 ~P~GF~C~~  214 (214)
                      +|+||+|+.
T Consensus        71 ~P~gF~C~~   79 (80)
T 1hyp_A           71 YPSNATCPR   79 (80)
T ss_dssp             SCCCCCCSC
T ss_pred             CcCCCCCCC
Confidence            999999974

>1l6h_A LTP2, non-specific lipid transfer protein; NSLTP2, plant LTP, lipid transport; NMR {Oryza sativa} SCOP: a.52.1.1

Probab=96.26  E-value=0.00028  Score=50.07  Aligned_cols=62  Identities=24%  Similarity=0.514  Sum_probs=44.6

Q ss_pred             ccCccccccccccccccccCCCCCCCCchhhhccccccchhhhhHHHhhhhccccccccchhhHHHhhhcCCCCC
Q 028062          133 ALKLGACVDVLGGLIHIGLGDSAKEKCCPLLQGLADLDAAVCLCTAIRLKALNLINLLVPISLQVLVNDCGKYPP  207 (214)
Q Consensus       133 aLKLgvCanVLgGLv~~~lG~P~~~pCCpLI~GLaDldAAvCLCtAIKAnVLGlInlniPi~L~lLLN~CGK~~P  207 (214)
                      ..+|..|...+.|      |..+...||.-|++     +..|||..+|...++ ..||...+.+ |...||..+|
T Consensus         5 ~~~L~pC~~~v~~------~~~Ps~~CC~~lk~-----~~~ClC~~~k~~~~~-~~in~~~A~~-Lp~~Cgv~~P   66 (69)
T 1l6h_A            5 AGQLTVCTGAIAG------GARPTAACCSSLRA-----QQGCFCQFAKDPRYG-RYVNSPNARK-AVSSCGIALP   66 (69)
T ss_dssp             TTTHHHHHHHHTT------CCSTTHHHHHHHHH-----HHHHHHHHTTCSSHH-HHTTTTTGGG-CCCCCSSCSC
T ss_pred             hhhcccCHHHHcC------CCCCCHHHHHhhCC-----CCCCCCccccCcccc-cccCHHHHHH-HHHHcCCCCC
Confidence            3467889776632      34566789999985     488999999866555 4566665665 5679999886

>1n89_A Lipid transfer protein; lipid transport; HET: PGM; NMR {Triticum turgidum subsp} SCOP: a.52.1.1 PDB: 1tuk_A*

Probab=96.17  E-value=0.00064  Score=47.95  Aligned_cols=62  Identities=21%  Similarity=0.479  Sum_probs=45.0

Q ss_pred             ccCccccccccccccccccCCCCCCCCchhhhccccccchhhhhHHHhhhhccccccccchhhHHHhhhcCCCCC
Q 028062          133 ALKLGACVDVLGGLIHIGLGDSAKEKCCPLLQGLADLDAAVCLCTAIRLKALNLINLLVPISLQVLVNDCGKYPP  207 (214)
Q Consensus       133 aLKLgvCanVLgGLv~~~lG~P~~~pCCpLI~GLaDldAAvCLCtAIKAnVLGlInlniPi~L~lLLN~CGK~~P  207 (214)
                      ..+|..|...+.|      |..+...||.-|++     +..|||..+|.-.++ ..||...+.+ |...||..+|
T Consensus         4 ~~~L~pC~~~v~~------~~~Ps~~CC~~lk~-----~~~ClC~~~k~~~~~-~~in~~~A~~-Lp~~Cgv~~P   65 (67)
T 1n89_A            4 ASQLAVCASAILS------GAKPSGECCGNLRA-----QQGCFCQYAKDPTYG-QYIRSPHARD-TLTSCGLAVP   65 (67)
T ss_dssp             SSTTHHHHHHHTT------CCCCCHHHHHHHHH-----HSSHHHHGGGCSTTH-HHHTCHHHHH-HHHHHTSCCS
T ss_pred             hhhcccCHHHHcC------CCCCCHHHHHhhCC-----CCCCCCccccCcccc-cccCHHHHHH-HHHHcCCCCC
Confidence            3467888776631      34566789999985     488999999876666 4566666665 5579999887

>2rkn_A DIR1 protein, AT5G48485; LTP, defense signaling protein, signaling protein, lipid TRA; HET: LP3; 1.60A {Arabidopsis thaliana}

Probab=95.62  E-value=0.0019  Score=46.12  Aligned_cols=72  Identities=24%  Similarity=0.409  Sum_probs=46.8

Q ss_pred             CCCCccccCccccccccccccccccCCCCCCCCchhhhccccccchhhhhHHHhhhhccccccccchhhHHHhhhcCCCC
Q 028062          127 QTCPIDALKLGACVDVLGGLIHIGLGDSAKEKCCPLLQGLADLDAAVCLCTAIRLKALNLINLLVPISLQVLVNDCGKYP  206 (214)
Q Consensus       127 ~tCP~DaLKLgvCanVLgGLv~~~lG~P~~~pCCpLI~GLaDldAAvCLCtAIKAnVLGlInlniPi~L~lLLN~CGK~~  206 (214)
                      ..|-.+..+|..|.+.+.|    +-+..+...||.-|++ +|   ..|||..++...++-++||...+++ |...||..+
T Consensus         3 ~~C~~~~~~L~pC~~yv~~----~~~~~Ps~~CC~~lk~-~~---~~ClC~~~~~~~~~~~gin~~~A~~-LP~~Cgv~~   73 (77)
T 2rkn_A            3 DLCGMSQDELNECKPAVSK----ENPTSPSQPCCTALQH-AD---FACLCGYKNSPWLGSFGVDPELASA-LPKQCGLAN   73 (77)
T ss_dssp             CBTTBCHHHHHHHGGGGBS----SSCCCCCHHHHHHHTT-CC---HHHHHTTTTCHHHHHHTBCHHHHHH-HHHHTTCSC
T ss_pred             chHHhHHHhHhhCHHHHcC----CCCCCCCHHHHHHHHh-cC---cCCcCcccCCcchhhcCcCHHHHHH-HHHHcCCCC
Confidence            4677777888889877742    1113456679999998 33   3899998883222212244444654 667999987


Q ss_pred             C
Q 028062          207 P  207 (214)
Q Consensus       207 P  207 (214)
                      |
T Consensus        74 p   74 (77)
T 2rkn_A           74 A   74 (77)
T ss_dssp             C
T ss_pred             C
Confidence            6

>2ljo_A Non-specific lipid-transfer protein 2; lipid transport; NMR {Lens culinaris}

Probab=94.16  E-value=0.0052  Score=46.07  Aligned_cols=74  Identities=22%  Similarity=0.436  Sum_probs=48.7

Q ss_pred             ccCccccccccccccccccCCCCCCCCchhhhcccccc----chhhhhHHHhhhhccccccccchhhHHHhhhcCCCCC-
Q 028062          133 ALKLGACVDVLGGLIHIGLGDSAKEKCCPLLQGLADLD----AAVCLCTAIRLKALNLINLLVPISLQVLVNDCGKYPP-  207 (214)
Q Consensus       133 aLKLgvCanVLgGLv~~~lG~P~~~pCCpLI~GLaDld----AAvCLCtAIKAnVLGlInlniPi~L~lLLN~CGK~~P-  207 (214)
                      ...|.-|.+.+.|      |..+...||.-+++|.+.-    .-.|+|..||...-++.+||...+. .|-..||-.+| 
T Consensus         8 ~~~L~pCl~Yv~g------~~~p~~~CC~gv~~l~~~a~t~~dr~~~C~clk~~a~~~~~in~~~a~-~LP~~CgV~~p~   80 (93)
T 2ljo_A            8 TSDLSPCLTYLTG------GPGPSPQCCGGVKKLLAAANTTPDRQAACNCLKSAAGSITKLNTNNAA-ALPGKCGVNIPY   80 (93)
T ss_dssp             HHHHHHHHHHHTT------SSCCCHHHHHHHHHHHHSCCSHHHHHHHHHHHHHHGGGCTTCCHHHHH-HHHHHHTCCCSS
T ss_pred             HHHHHhHHHHHcC------CCCCCCchhhHHHHHHHHhcCcccHHHHHHhHHhhhhccCCcCHHHHH-hhhHhcCCCCCC
Confidence            3456667666532      2335668999999886542    2469999898665443455655454 47789999988 


Q ss_pred             ---CCCcCC
Q 028062          208 ---AGFQCP  213 (214)
Q Consensus       208 ---~GF~C~  213 (214)
                         ..+.|.
T Consensus        81 ~Is~~~dC~   89 (93)
T 2ljo_A           81 KISTTTNCN   89 (93)
T ss_dssp             CCSTTCCGG
T ss_pred             CCCCCCCCC
Confidence               566664

>1siy_A LTP 1, NS-LTP1, nonspecific lipid-transfer protein 1; alpha helix, lipid binding protein; NMR {Vigna radiata var}

Probab=93.63  E-value=0.0078  Score=44.46  Aligned_cols=75  Identities=24%  Similarity=0.484  Sum_probs=47.8

Q ss_pred             CCccccCccccccccccccccccCCCCCCCCchhhhccccc-----c-chhhhhHHHhhhhcccc-ccccchhhHHHhhh
Q 028062          129 CPIDALKLGACVDVLGGLIHIGLGDSAKEKCCPLLQGLADL-----D-AAVCLCTAIRLKALNLI-NLLVPISLQVLVND  201 (214)
Q Consensus       129 CP~DaLKLgvCanVLgGLv~~~lG~P~~~pCCpLI~GLaDl-----d-AAvCLCtAIKAnVLGlI-nlniPi~L~lLLN~  201 (214)
                      |-....+|..|.+.+.|      |..+...||.-|++|.+.     | .+.|||.  |...-+ + +||...+++ |...
T Consensus         3 C~~v~~~L~pCl~yv~~------~~~Ps~~CC~~lk~l~~~a~t~~d~~~~ClC~--k~~~~~-~~~in~~~A~~-LP~~   72 (91)
T 1siy_A            3 CGQVQGNLAQCIGFLQK------GGVVPPSCCTGVKNILNSSRTTADRRAVCSCL--KAAAGA-VRGINPNNAEA-LPGK   72 (91)
T ss_dssp             TTTTHHHHHHHHHHHTS------CSCCCHHHHHHHHHHHTTTCSSHHHHHHHHHH--HHHTTC-CSSCCHHHHHH-HHHH
T ss_pred             HHHHHHhccCcHHHHhC------CCCCcHHHHHHHHHHHhhhccCCCCCcCCccc--CCcccc-cCCcCHHHHHH-HHHH
Confidence            55556678888877742      223566799999998643     3 3689996  433222 3 455555654 6679


Q ss_pred             cCCCCC----CCCcCC
Q 028062          202 CGKYPP----AGFQCP  213 (214)
Q Consensus       202 CGK~~P----~GF~C~  213 (214)
                      ||..+|    ..+.|.
T Consensus        73 Cgv~~p~~is~~~dC~   88 (91)
T 1siy_A           73 CGVNIPYKISTSTNCN   88 (91)
T ss_dssp             HTCCCSSCSCTTSCSS
T ss_pred             cCCCCCCCCCCCCCCc
Confidence            999865    355553

>2alg_A Non-specific lipid transfer protein; LTP, NS-LTP, FOOD allergen, lipid transport; HET: DAO P6G; 2.30A {Prunus persica} PDB: 2b5s_A*

Probab=93.09  E-value=0.0056  Score=45.30  Aligned_cols=70  Identities=23%  Similarity=0.488  Sum_probs=45.8

Q ss_pred             CCccccCccccccccccccccccCCCCCCCCchhhhccccc-----c-chhhhhHHHhhhhccccccccchhhHHHhhhc
Q 028062          129 CPIDALKLGACVDVLGGLIHIGLGDSAKEKCCPLLQGLADL-----D-AAVCLCTAIRLKALNLINLLVPISLQVLVNDC  202 (214)
Q Consensus       129 CP~DaLKLgvCanVLgGLv~~~lG~P~~~pCCpLI~GLaDl-----d-AAvCLCtAIKAnVLGlInlniPi~L~lLLN~C  202 (214)
                      |-....+|..|.+.+.|      |..+...||.-|++|.+.     | .+.|||...++.-++  +||...+++ |...|
T Consensus         4 C~~v~~~L~pCl~y~~~------~~~p~~~CC~~lk~l~~~a~t~~d~~~~ClC~~~~~~~~~--~in~~~A~~-LP~~C   74 (92)
T 2alg_A            4 CGQVSSSLAPCIPYVRG------GGAVPPACCNGIRNVNNLARTTPDRQAACNCLKQLSASVP--GVNPNNAAA-LPGKC   74 (92)
T ss_dssp             HHHHHHHHGGGHHHHHH------CSCCCHHHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHST--TCCHHHHHH-HHHHT
T ss_pred             hHHHHHhccCcHHHHcC------CCCCCHHHHHHHHHHHhhhcccCCCCcCCccccCcccccC--ccChHHHHH-HHHHc
Confidence            43344578888877742      223445799999998632     2 268999976666553  344444554 66799


Q ss_pred             CCCCC
Q 028062          203 GKYPP  207 (214)
Q Consensus       203 GK~~P  207 (214)
                      |-.+|
T Consensus        75 gv~~p   79 (92)
T 2alg_A           75 GVSIP   79 (92)
T ss_dssp             TCCCS
T ss_pred             CCCCC
Confidence            99876

>1bwo_A NS-LTP1, nonspecific lipid-transfer protein; wheat, lipid binding, crystallography; HET: LPC; 2.10A {Triticum aestivum} SCOP: a.52.1.1 PDB: 1cz2_A* 1gh1_A 1be2_A* 1jtb_A* 1lip_A 1mid_A* 3cee_A* 3gsh_A*

Probab=92.84  E-value=0.0061  Score=45.03  Aligned_cols=66  Identities=23%  Similarity=0.430  Sum_probs=42.0

Q ss_pred             cccCccccccccccccccccCCCCCCCCchhhhcccccc------chhhhhHHHhhhhcccc-ccccchhhHHHhhhcCC
Q 028062          132 DALKLGACVDVLGGLIHIGLGDSAKEKCCPLLQGLADLD------AAVCLCTAIRLKALNLI-NLLVPISLQVLVNDCGK  204 (214)
Q Consensus       132 DaLKLgvCanVLgGLv~~~lG~P~~~pCCpLI~GLaDld------AAvCLCtAIKAnVLGlI-nlniPi~L~lLLN~CGK  204 (214)
                      ...+|..|.+.+.|      |..+...||.-+++|.+.-      .+.|||.  |....+ + +||...++ .|...||-
T Consensus         6 v~~~L~pCl~y~~~------~~~Ps~~CC~~lk~l~~~a~t~~dr~~~ClCl--k~~~~~-~~~in~~~A~-~LP~~C~v   75 (90)
T 1bwo_A            6 VDSLVRPCLSYVQG------GPGPSGQCCDGVKNLHNQARSQSDRQSACNCL--KGIARG-IHNLNEDNAR-SIPPKCGV   75 (90)
T ss_dssp             HHHHHGGGHHHHTT------CSCCCHHHHHHHHHHHHHCCSHHHHHHHHHHH--HHHHTT-CTTCCHHHHH-THHHHHTC
T ss_pred             HHHhhcccHHHHcC------CCCCCHHHhHHHHHHHhhccCCCCCCccCcCc--cCchhc-cCCcCHHHHH-HHHHHcCC
Confidence            34567888887742      2225667999999986421      3789994  543322 2 34544455 46679999


Q ss_pred             CCC
Q 028062          205 YPP  207 (214)
Q Consensus       205 ~~P  207 (214)
                      .++
T Consensus        76 ~~p   78 (90)
T 1bwo_A           76 NLP   78 (90)
T ss_dssp             CCS
T ss_pred             CCC
Confidence            865

>1afh_A Maize nonspecific lipid transfer protein; lipid-binding protein, molecular modeling,; NMR {Zea mays} SCOP: a.52.1.1 PDB: 1fk0_A* 1fk1_A* 1fk2_A* 1fk3_A* 1fk4_A* 1fk5_A* 1fk6_A* 1fk7_A* 1mzl_A 1mzm_A* 1bv2_A 1rzl_A* 1uva_A* 1uvb_A* 1uvc_A*

Probab=92.72  E-value=0.0088  Score=44.32  Aligned_cols=71  Identities=21%  Similarity=0.457  Sum_probs=45.3

Q ss_pred             CCccccCccccccccccccccccCCCCCCCCchhhhccccc---c---chhhhhHHHhhhhccccccccchhhHHHhhhc
Q 028062          129 CPIDALKLGACVDVLGGLIHIGLGDSAKEKCCPLLQGLADL---D---AAVCLCTAIRLKALNLINLLVPISLQVLVNDC  202 (214)
Q Consensus       129 CP~DaLKLgvCanVLgGLv~~~lG~P~~~pCCpLI~GLaDl---d---AAvCLCtAIKAnVLGlInlniPi~L~lLLN~C  202 (214)
                      |-....+|..|.+.+.|     -+..+...||.-|++|.+.   .   .+.|||....+.-++  +||...+++ |-..|
T Consensus         4 C~~v~~~L~pCl~y~~~-----~~~~Ps~~CC~gv~~l~~~a~t~~dr~~~ClC~~~~~~~~~--~in~~~A~~-LP~~C   75 (93)
T 1afh_A            4 CGQVASAIAPCISYARG-----QGSGPSAGCCSGVRSLNNAARTTADRRAACNCLKNAAAGVS--GLNAGNAAS-IPSKC   75 (93)
T ss_dssp             SHHHHHHHGGGHHHHTT-----SCCSCCHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHTTST--TCCHHHHHH-HHHHH
T ss_pred             hHHHHHhccCcHHHHcC-----CCCCChHHHHHHHHHHHHhhcCCCCCcccCEeecccccccc--CcCHHHHHH-HHHHc
Confidence            54455678889887743     1233555799999998532   1   278999755554442  344444554 66799


Q ss_pred             CCCCC
Q 028062          203 GKYPP  207 (214)
Q Consensus       203 GK~~P  207 (214)
                      |-.++
T Consensus        76 ~v~~p   80 (93)
T 1afh_A           76 GVSIP   80 (93)
T ss_dssp             HCCCS
T ss_pred             CCCCC
Confidence            98765

>1t12_A LTP 1, nonspecific lipid-transfer protein 1; cystein rich protein, lipid transport; NMR {Nicotiana tabacum}

Probab=91.33  E-value=0.028  Score=41.56  Aligned_cols=69  Identities=22%  Similarity=0.460  Sum_probs=43.3

Q ss_pred             CCccccCccccccccccccccccCCCCCCCCchhhhcccccc------chhhhhHHHhhhhccccccccchhhHHHhhhc
Q 028062          129 CPIDALKLGACVDVLGGLIHIGLGDSAKEKCCPLLQGLADLD------AAVCLCTAIRLKALNLINLLVPISLQVLVNDC  202 (214)
Q Consensus       129 CP~DaLKLgvCanVLgGLv~~~lG~P~~~pCCpLI~GLaDld------AAvCLCtAIKAnVLGlInlniPi~L~lLLN~C  202 (214)
                      |-....+|..|.+.+.|     -+. +. .||.-|++|.+.-      .+.|||..--++-++  .||...+++ |-..|
T Consensus         4 C~~v~~~L~pCl~y~~~-----~~~-P~-~CC~gv~~l~~~a~t~~dr~~~ClClk~~~~~~~--~in~~~A~~-LP~~C   73 (91)
T 1t12_A            4 CGQVTSNLAPCLAYLRN-----TGP-LG-RCCGGVKALVNSARTTEDRQIACTCLKSAAGAIS--GINLGKAAG-LPSTC   73 (91)
T ss_dssp             HHHHHHHTHHHHHHHTT-----SSC-CT-THHHHHHHHHHTTCSTHHHHHHHHHHHHHHHHCT--TCCHHHHHH-HHHHT
T ss_pred             hHHHHHhccCcHHHHcC-----CCC-hH-HHHHHHHHHHhhccCCCCCCccCCCccccccccC--CcChhHHHH-HHHHc
Confidence            43345677888877743     123 55 8999999986531      379999632233442  344444554 66799


Q ss_pred             CCCCC
Q 028062          203 GKYPP  207 (214)
Q Consensus       203 GK~~P  207 (214)
                      |-.++
T Consensus        74 ~v~~p   78 (91)
T 1t12_A           74 GVNIP   78 (91)
T ss_dssp             TCCCS
T ss_pred             CCCCC
Confidence            99865

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	214
d1hypa_	75	a.52.1.1 (A:) Soybean hydrophobic protein {Soybean	4e-23
d1hbxg_	155	a.4.5.21 (G:) Serum response factor accessory prot	5e-04

>d1hypa_ a.52.1.1 (A:) Soybean hydrophobic protein {Soybean (Glycine max) [TaxId: 3847]} Length = 75

class: All alpha proteins
fold: Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin
superfamily: Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin
family: Plant lipid-transfer and hydrophobic proteins
domain: Soybean hydrophobic protein
species: Soybean (Glycine max) [TaxId: 3847]

 Score = 86.3 bits (214), Expect = 4e-23
 Identities = 28/87 (32%), Positives = 46/87 (52%), Gaps = 14/87 (16%)

Query: 128 TCPIDALKLGACVDVLGGLIHIGLGDSAKEKCCPLLQGLADLDAAVCLCTAIRLKALNLI 187
           +CP     L  C+++LGG +         + CC L+ GL D++A VCLC  +R   +   
Sbjct: 2   SCP----DLSICLNILGGSLG------TVDDCCALIGGLGDIEAIVCLCIQLRALGI--- 48

Query: 188 NLLVPISLQVLVNDCGKYPPAGFQCPA 214
            L +  +LQ+++N CG+  P+   CP 
Sbjct: 49  -LNLNRNLQLILNSCGRSYPSNATCPR 74

>d1hbxg_ a.4.5.21 (G:) Serum response factor accessory protein 1a, SAP-1 {Human (Homo sapiens) [TaxId: 9606]} Length = 155

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: "Winged helix" DNA-binding domain
family: ets domain
domain: Serum response factor accessory protein 1a, SAP-1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 36.9 bits (85), Expect = 5e-04
 Identities = 9/47 (19%), Positives = 12/47 (25%)

Query: 29  NNPPPPPASKTPNCPPPPSSPSPKTPPPPPPFVKSPPPPPPVVKSAP 75
           N  P        +C     S    +        K  PP P    S+ 
Sbjct: 91  NMDPMTVGRIEGDCESLNFSEVSSSSKDVENGGKDKPPQPGAKTSSR 137

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	214
d1hypa_	75	Soybean hydrophobic protein {Soybean (Glycine max)	99.96
d1fk5a_	93	Plant non-specific lipid-transfer protein (ns-LTP,	95.3
d1mida_	91	Plant non-specific lipid-transfer protein (ns-LTP,	93.88
d1tuka1	67	Non-specific lipid-transfer protein homologue (ns-	91.9
d1l6ha_	69	Non-specific lipid-transfer protein homologue (ns-	89.49

>d1hypa_ a.52.1.1 (A:) Soybean hydrophobic protein {Soybean (Glycine max) [TaxId: 3847]}

class: All alpha proteins
fold: Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin
superfamily: Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin
family: Plant lipid-transfer and hydrophobic proteins
domain: Soybean hydrophobic protein
species: Soybean (Glycine max) [TaxId: 3847]

Probab=99.96  E-value=9.4e-31  Score=193.16  Aligned_cols=74  Identities=39%  Similarity=0.949  Sum_probs=66.2

Q ss_pred             CCCCccccCccccccccccccccccCCCCCCCCchhhhccccccchhhhhHHHhhhhccccccccchhhHHHhhhcCCCC
Q 028062          127 QTCPIDALKLGACVDVLGGLIHIGLGDSAKEKCCPLLQGLADLDAAVCLCTAIRLKALNLINLLVPISLQVLVNDCGKYP  206 (214)
Q Consensus       127 ~tCP~DaLKLgvCanVLgGLv~~~lG~P~~~pCCpLI~GLaDldAAvCLCtAIKAnVLGlInlniPi~L~lLLN~CGK~~  206 (214)
                      .+||    |||+|+|||||+++      ..++||++|+||+|+|||+||||||||+  | | +|+||+|++|+|.|||++
T Consensus         1 PtCP----Klg~C~nvLg~~~~------~~~~CC~Ll~GL~dleAAvCLCtaika~--~-l-lnvpv~l~llln~Cgk~~   66 (75)
T d1hypa_           1 PSCP----DLSICLNILGGSLG------TVDDCCALIGGLGDIEAIVCLCIQLRAL--G-I-LNLNRNLQLILNSCGRSY   66 (75)
T ss_dssp             CCSC----CCGGGGGGGGTCCT------THHHHHHHHHTSCHHHHHHHHHHHHHHH--T-C-SCHHHHHHHHHHHTTCSS
T ss_pred             CCCC----chhhHHHHhcCccC------CCCCcchHHhhHHHHHHHHHHHHHHHHh--h-h-ccccchHHHHHHHcCCcC
Confidence            3799    89999999997753      4578999999999999999999999995  4 3 678899999999999999


Q ss_pred             CCCCcCCC
Q 028062          207 PAGFQCPA  214 (214)
Q Consensus       207 P~GF~C~~  214 (214)
                      |+||+|++
T Consensus        67 P~gF~CP~   74 (75)
T d1hypa_          67 PSNATCPR   74 (75)
T ss_dssp             CCCCCCSC
T ss_pred             cCCCcCCC
Confidence            99999975

>d1fk5a_ a.52.1.1 (A:) Plant non-specific lipid-transfer protein (ns-LTP, ns-LTP1) {Maize (Zea mays) [TaxId: 4577]}

class: All alpha proteins
fold: Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin
superfamily: Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin
family: Plant lipid-transfer and hydrophobic proteins
domain: Plant non-specific lipid-transfer protein (ns-LTP, ns-LTP1)
species: Maize (Zea mays) [TaxId: 4577]

Probab=95.30  E-value=0.00075  Score=48.53  Aligned_cols=79  Identities=19%  Similarity=0.439  Sum_probs=52.7

Q ss_pred             CCccccCccccccccccccccccCCCCCCCCchhhhccccc----cchhhhhHHHhhhhccccccccchhhHHHhhhcCC
Q 028062          129 CPIDALKLGACVDVLGGLIHIGLGDSAKEKCCPLLQGLADL----DAAVCLCTAIRLKALNLINLLVPISLQVLVNDCGK  204 (214)
Q Consensus       129 CP~DaLKLgvCanVLgGLv~~~lG~P~~~pCCpLI~GLaDl----dAAvCLCtAIKAnVLGlInlniPi~L~lLLN~CGK  204 (214)
                      |-....+|.-|.+.|.|     .+..+...||.-+++|.++    +...|+|..||...-+...||.- .+..|-..||-
T Consensus         4 C~~v~~~l~pCl~Yltg-----~~~~Ps~~CC~gv~~l~~~a~t~~dr~~lC~cl~~~~~~~~~in~~-ra~~LP~~C~v   77 (93)
T d1fk5a_           4 CGQVASAIAPCISYARG-----QGSGPSAGCCSGVRSLNNAARTTADRRAACNCLKNAAAGVSGLNAG-NAASIPSKCGV   77 (93)
T ss_dssp             HHHHHHHHGGGHHHHTT-----CSSSCCHHHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHTCTTCCHH-HHHHHHHHTTC
T ss_pred             HHHHHHHhhhhHHHHhC-----CCCCCCCchhHHHHHHHHHccCCccHHHHHHhhhhcccccCCcCHH-HHHhhhHhcCC
Confidence            44345678888887753     2333567899999998864    33568888888765442345544 34457789999


Q ss_pred             CCC----CCCcCC
Q 028062          205 YPP----AGFQCP  213 (214)
Q Consensus       205 ~~P----~GF~C~  213 (214)
                      .++    ..|.|.
T Consensus        78 ~l~~pis~~~dCs   90 (93)
T d1fk5a_          78 SIPYTISTSTDCS   90 (93)
T ss_dssp             CCSSCCSTTCCGG
T ss_pred             CCCCCCCCCCCCC
Confidence            877    567774

>d1mida_ a.52.1.1 (A:) Plant non-specific lipid-transfer protein (ns-LTP, ns-LTP1) {Barley (Hordeum vulgare) [TaxId: 4513]}

class: All alpha proteins
fold: Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin
superfamily: Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin
family: Plant lipid-transfer and hydrophobic proteins
domain: Plant non-specific lipid-transfer protein (ns-LTP, ns-LTP1)
species: Barley (Hordeum vulgare) [TaxId: 4513]

Probab=93.88  E-value=0.0027  Score=45.40  Aligned_cols=74  Identities=19%  Similarity=0.452  Sum_probs=51.2

Q ss_pred             ccCccccccccccccccccCCCCCCCCchhhhccccc----cchhhhhHHHhhhhccccccccchhhHHHhhhcCCCCC-
Q 028062          133 ALKLGACVDVLGGLIHIGLGDSAKEKCCPLLQGLADL----DAAVCLCTAIRLKALNLINLLVPISLQVLVNDCGKYPP-  207 (214)
Q Consensus       133 aLKLgvCanVLgGLv~~~lG~P~~~pCCpLI~GLaDl----dAAvCLCtAIKAnVLGlInlniPi~L~lLLN~CGK~~P-  207 (214)
                      ..+|.-|.+.|.|      |..+...||.-+++|.+.    +.-.|||..||....+...||...+ ..|-..||-+++ 
T Consensus         7 ~~~l~pCl~Yl~g------~~~P~~~CC~gv~~L~~~a~t~~d~~~lC~cl~~~~~~~~~in~~ra-~~LP~~C~v~~p~   79 (91)
T d1mida_           7 DSKMKPCLTYVQG------GPGPSGECCNGVRDLHNQAQSSGDRQTVCNCLKGIARGIHNLNLNNA-ASIPSKCNVNVPY   79 (91)
T ss_dssp             HHHHGGGHHHHTT------CSCCCHHHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHTCTTCCHHHH-HHHHHHTTCCCCS
T ss_pred             HHHHHhhHHHHcC------CCCCCcchhhhHHHHHHHhcCCCcHHHHHHhhhhhcccCCCcCHHHH-HhchHhcCCCCCC
Confidence            4567788887743      234667899999999764    2357999999876544234555444 467789999988 


Q ss_pred             ---CCCcCC
Q 028062          208 ---AGFQCP  213 (214)
Q Consensus       208 ---~GF~C~  213 (214)
                         .++.|.
T Consensus        80 pis~~~dC~   88 (91)
T d1mida_          80 TISPDIDCS   88 (91)
T ss_dssp             CCCTTCCGG
T ss_pred             CCCCCCCCC
Confidence               677774

>d1tuka1 a.52.1.1 (A:1-67) Non-specific lipid-transfer protein homologue (ns-LTP2) {Triticum turgidum [TaxId: 4571]}

class: All alpha proteins
fold: Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin
superfamily: Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin
family: Plant lipid-transfer and hydrophobic proteins
domain: Non-specific lipid-transfer protein homologue (ns-LTP2)
species: Triticum turgidum [TaxId: 4571]

Probab=91.90  E-value=0.015  Score=40.58  Aligned_cols=64  Identities=20%  Similarity=0.446  Sum_probs=47.5

Q ss_pred             cccCccccccccccccccccCCCCCCCCchhhhccccccchhhhhHHHhhhhccccccccchhhHHHhhhcCCCCCC
Q 028062          132 DALKLGACVDVLGGLIHIGLGDSAKEKCCPLLQGLADLDAAVCLCTAIRLKALNLINLLVPISLQVLVNDCGKYPPA  208 (214)
Q Consensus       132 DaLKLgvCanVLgGLv~~~lG~P~~~pCCpLI~GLaDldAAvCLCtAIKAnVLGlInlniPi~L~lLLN~CGK~~P~  208 (214)
                      |..+|..|+..+.      .|.++...||+-|.     |.--|||.-+|.-.++ --|+=+ +-+-+++.||..+|.
T Consensus         3 ~p~~L~~C~~Ai~------~g~~PS~~CC~kLk-----eQ~~ClC~Y~kdP~~~-~yv~sp-narkv~~aCgvp~P~   66 (67)
T d1tuka1           3 QASQLAVCASAIL------SGAKPSGECCGNLR-----AQQGCFCQYAKDPTYG-QYIRSP-HARDTLTSCGLAVPH   66 (67)
T ss_dssp             CGGGGGGGHHHHH------HCCCCCHHHHHHHH-----HHGGGHHHHTTCTTTH-HHHTSH-HHHHHHHHTTCCCCC
T ss_pred             ChhhccccHHHHh------cCCCCcHHHHHHHH-----hcCCccceecCCccHH-HHcCCH-HHHHHHHhcCCCCCC
Confidence            4568999987652      45678889999988     5678999999987766 334433 446678899998874

>d1l6ha_ a.52.1.1 (A:) Non-specific lipid-transfer protein homologue (ns-LTP2) {Rice (Oryza sativa) [TaxId: 4530]}

class: All alpha proteins
fold: Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin
superfamily: Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin
family: Plant lipid-transfer and hydrophobic proteins
domain: Non-specific lipid-transfer protein homologue (ns-LTP2)
species: Rice (Oryza sativa) [TaxId: 4530]

Probab=89.49  E-value=0.013  Score=41.25  Aligned_cols=64  Identities=22%  Similarity=0.461  Sum_probs=46.5

Q ss_pred             cccCccccccccccccccccCCCCCCCCchhhhccccccchhhhhHHHhhhhccccccccchhhHHHhhhcCCCCCC
Q 028062          132 DALKLGACVDVLGGLIHIGLGDSAKEKCCPLLQGLADLDAAVCLCTAIRLKALNLINLLVPISLQVLVNDCGKYPPA  208 (214)
Q Consensus       132 DaLKLgvCanVLgGLv~~~lG~P~~~pCCpLI~GLaDldAAvCLCtAIKAnVLGlInlniPi~L~lLLN~CGK~~P~  208 (214)
                      |..+|..|+..+.      .|.++...||+-|+     |..-|||.-+|.-.++ -.|+=| .-+-+++.||..+|.
T Consensus         4 ~p~~L~~C~~ai~------~g~~PS~~CC~kLk-----eQ~~ClC~Y~k~P~~~-~yv~sp-narkv~~aCgvp~P~   67 (69)
T d1l6ha_           4 NAGQLTVCTGAIA------GGARPTAACCSSLR-----AQQGCFCQFAKDPRYG-RYVNSP-NARKAVSSCGIALPT   67 (69)
T ss_dssp             TTTTHHHHHHHHT------TCCSTTHHHHHHHH-----HHHHHHHHHTTCSSHH-HHTTTT-TGGGCCCCCSSCSCC
T ss_pred             ChhhccccHHHHh------CCCCCcHHHHHHHH-----hcCCccceeccCccHH-HHcCCH-HHHHHHHhcCCCCCC
Confidence            4557889987552      45667889999988     5668999999977666 333333 456678899998874