Citrus Sinensis ID: 028067

---

Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210----
Protein Sequence
MMVTNDYITVNGSGSGGFGKIEEDYIKRHHKHDVHDHQCSSSLVKHIKAPVHLVWSLVRRFDQPQKYKPFVSRCIVQGDLQIGSVREVNVKSGLPATTSTERLELLDDEEHIFGMRIVGGDHRLKIIWNFSNFISTSSSKLQNYSSIVTVHPEVIDGRPGTLVIESFVVDVPDGNTKDETCYFVEALIKCNLKSLADVSEHLAVQDRTEPIDRI
Secondary Structure (PSIPRED)
cEEEccEEEEEccccccccccHHHHHHHHccccccccccEEEEEEEEccccccHHHHHHccccccccccccEEEEEEccccccEEEEEEEEEcccccccccccccccccccEEEEEEEcccccEEEEEcccccccccccccccccccEEEEEcccccccEEEEEEEEEEEccccccccHHHHHHHHHHHHccHHHHHHHHHHHHcccccccccc
Secondary Structure Prediction (SSPRO)
cEEEccEEEEccccccccccccHHHHHHHHccccccccccHHEEEEEcccHHHHHHHHHHccccccccccEEEEEEEccccEEEEEEEEEEcccccccccHHHHHccccccEEEEEEEcccHHHHHHHHccccccccccccccccEEEEEcccccccccEEEEEEEEEEEccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHccc
Coil and Loop (DISEMBL)
mmvtndyitvngsgsggfgkieedyikrhhkhdvhdhqcssslvkhikaPVHLVWSLVRrfdqpqkykpfvsrcivqgdlqigsvrevnvksglpattsterlellddeehifgmrivggdhRLKIIWNFSNfistsssklqnyssivtvhpevidgrpgtLVIESFVvdvpdgntkdeTCYFVEALIKCNLKSLADvsehlavqdrtepidri
Flexible Loop (DISEMBL)
mmvtndyitvngsgsggfGKIEEDYIKRHHKHDVHDHQCSSSLVKHIKAPVHLVWSLVRRFDQPQKYKPFVSRCIVQGdlqigsvrevnvksglpattsterlellddeEHIFGMRIVGGDHRLKIIWNFSNFISTSSSKLQNYSSIVTVHPEVIDGRPGTLVIESFVVDVPDGNTKDETCYFVEALIKCNLKsladvsehlavqdrtepidri
Low Complexity Region (SEG)
MMVTNDYITVNGSGSGGFGKIEEDYIKRHHKHDVHDHQCSSSLVKHIKAPVHLVWSLVRRFDQPQKYKPFVSRCIVQGDLQIGSVREVNVKSGLPATTSTERLELLDDEEHIFGMRIVGGDHRLKIIWNFSNFISTSSSKLQNYSSIVTVHPEVIDGRPGTLVIESFVVDVPDGNTKDETCYFVEALIKCNLKSLADVSEHLAVQDRTEPIDRI
Disordered region (IsUnstruct)
******YITVNG*GSGGFGKIEEDYIKRHHKHDVHDHQCSSSLVKHIKAPVHLVWSLVRRFDQPQKYKPFVSRCIVQGDLQIGSVREVNVKSGLPATTSTERLELLDDEEHIFGMRIVGGDHRLKIIWNFSNFISTSSSKLQNYSSIVTVHPEVIDGRPGTLVIESFVVDVPDGNTKDETCYFVEALIKCNLKSLADVSEH*************
Disordered Region (DISOPRED)
********TVNGSGSGGFGKIEEDYIKRHHKHDVHDHQCSSSLVKHIKAPVHLVWSLVRRFDQPQKYKPFVSRCIVQGDLQIGSVREVNVKSGLPATTSTERLELLDDEEHIFGMRIVGGDHRLKIIWNFS*********************EVIDGRPGTLVIESFVVDVPDGNTKDETCYFVEALIKCNLKSLADV****************
Disordered Region (DISEMBL)
MMVTNDYITVNGSGSGGFGKIEEDYIKR**************LVKHIKAPVHLVWSLVRRFDQPQKYKPFVSRCIVQGDLQIGSVREVNVKSGLPATTSTERLELLDDEEHIFGMRIVGGDHRLKIIWNFSNFISTSSSKLQNYSSIVTVHPEVIDGRPGTLVIESFVVDVPDGNTKDETCYFVEALIKCNLKSLADVSEHLAVQDRTEPIDRI
Disordered Region (DISPRO)
MMVTNDYITVNGSGSGGFGKIEEDYIKRHHKHDVHDHQCSSSLVKHIKAPVHLVWSLVRRFDQPQKYKPFVSRCIVQGDLQIGSVREVNVKSGLPATTSTERLELLDDEEHIFGMRIVGGDHRLKIIWNFSNFISTSSSKLQNYSSIVTVHPEVIDGRPGTLVIESFVVDVPDGNTKDETCYFVEALIKCNLKSLADVSEHLAVQ*********
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MMVTNDYITVNGSGSGGFGKIEEDYIKRHHKHDVHDHQCSSSLVKHIKAPVHLVWSLVRRFDQPQKYKPFVSRCIVQGDLQIGSVREVNVKSGLPATTSTERLELLDDEEHIFGMRIVGGDHRLKIIWNFSNFISTSSSKLQNYSSIVTVHPEVIDGRPGTLVIESFVVDVPDGNTKDETCYFVEALIKCNLKSLADVSEHLAVQDRTEPIDRI
Positional Conservation
no confident homologs detected

---

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	214	2.2.26 [Sep-21-2011]
Q9FGM1	188	Abscisic acid receptor PY	yes	no	0.799	0.909	0.728	1e-77
Q84MC7	187	Abscisic acid receptor PY	no	no	0.836	0.957	0.705	1e-76
Q1ECF1	211	Abscisic acid receptor PY	no	no	0.789	0.800	0.693	3e-70
Q8H1R0	183	Abscisic acid receptor PY	no	no	0.817	0.956	0.642	2e-69
Q9FLB1	203	Abscisic acid receptor PY	no	no	0.714	0.753	0.497	1e-40
O80920	207	Abscisic acid receptor PY	no	no	0.747	0.772	0.478	8e-39
Q8S8E3	215	Abscisic acid receptor PY	no	no	0.761	0.758	0.456	2e-38
O80992	190	Abscisic acid receptor PY	no	no	0.789	0.889	0.413	5e-36
O49686	191	Abscisic acid receptor PY	no	no	0.766	0.858	0.426	1e-35
Q9SSM7	209	Abscisic acid receptor PY	no	no	0.733	0.751	0.362	3e-30

>sp|Q9FGM1|PYL8_ARATH Abscisic acid receptor PYL8 OS=Arabidopsis thaliana GN=PYL8 PE=1 SV=1

 Score =  289 bits (739), Expect = 1e-77,   Method: Compositional matrix adjust.
 Identities = 137/188 (72%), Positives = 160/188 (85%), Gaps = 17/188 (9%)

Query: 22  EEDYIKRHHKHDVHDHQCSSSLVKHIKAPVHLVWSLVRRFDQPQKYKPFVSRCIVQGDLQ 81
           E ++I+RHHKH++ D+QCSS+LVKHI APVH+VWSLVRRFDQPQKYKPF+SRC+V+G+++
Sbjct: 15  EREFIRRHHKHELVDNQCSSTLVKHINAPVHIVWSLVRRFDQPQKYKPFISRCVVKGNME 74

Query: 82  IGSVREVNVKSGLPATTSTERLELLDDEEHIFGMRIVGGDHRLKIIWNFSNFISTSSSKL 141
           IG+VREV+VKSGLPAT STERLELLDD EHI  +RIVGGDHRLK                
Sbjct: 75  IGTVREVDVKSGLPATRSTERLELLDDNEHILSIRIVGGDHRLK---------------- 118

Query: 142 QNYSSIVTVHPEVIDGRPGTLVIESFVVDVPDGNTKDETCYFVEALIKCNLKSLADVSEH 201
            NYSSI+++HPE I+GR GTLVIESFVVDVP+GNTKDETCYFVEALIKCNLKSLAD+SE 
Sbjct: 119 -NYSSIISLHPETIEGRIGTLVIESFVVDVPEGNTKDETCYFVEALIKCNLKSLADISER 177

Query: 202 LAVQDRTE 209
           LAVQD TE
Sbjct: 178 LAVQDTTE 185

Receptor for abscisic acid (ABA) required for ABA-mediated responses such as stomatal closure and germination inhibition. Inhibits the activity of group-A protein phosphatases type 2C (PP2Cs) when activated by ABA. Confers enhanced sensitivity to ABA.
Arabidopsis thaliana (taxid: 3702)

>sp|Q84MC7|PYL9_ARATH Abscisic acid receptor PYL9 OS=Arabidopsis thaliana GN=PYL9 PE=1 SV=1

 Score =  285 bits (729), Expect = 1e-76,   Method: Compositional matrix adjust.
 Identities = 139/197 (70%), Positives = 161/197 (81%), Gaps = 18/197 (9%)

Query: 14  GSGGFGKIEE-DYIKRHHKHDVHDHQCSSSLVKHIKAPVHLVWSLVRRFDQPQKYKPFVS 72
           G+  +G +E   Y++ HH+H   ++QC+S+LVKHIKAP+HLVWSLVRRFDQPQKYKPFVS
Sbjct: 8   GTAMYGGLETVQYVRTHHQHLCRENQCTSALVKHIKAPLHLVWSLVRRFDQPQKYKPFVS 67

Query: 73  RCIVQGDLQIGSVREVNVKSGLPATTSTERLELLDDEEHIFGMRIVGGDHRLKIIWNFSN 132
           RC V GD +IGS+REVNVKSGLPATTSTERLELLDDEEHI G++I+GGDHRLK       
Sbjct: 68  RCTVIGDPEIGSLREVNVKSGLPATTSTERLELLDDEEHILGIKIIGGDHRLK------- 120

Query: 133 FISTSSSKLQNYSSIVTVHPEVIDGRPGTLVIESFVVDVPDGNTKDETCYFVEALIKCNL 192
                     NYSSI+TVHPE+I+GR GT+VIESFVVDVP GNTKDETCYFVEALI+CNL
Sbjct: 121 ----------NYSSILTVHPEIIEGRAGTMVIESFVVDVPQGNTKDETCYFVEALIRCNL 170

Query: 193 KSLADVSEHLAVQDRTE 209
           KSLADVSE LA QD T+
Sbjct: 171 KSLADVSERLASQDITQ 187

Receptor for abscisic acid (ABA) required for ABA-mediated responses such as stomatal closure and germination inhibition. Inhibits the activity of group-A protein phosphatases type 2C (PP2Cs) when activated by ABA. Confers enhanced sensitivity to ABA.

Arabidopsis thaliana (taxid: 3702)

>sp|Q1ECF1|PYL7_ARATH Abscisic acid receptor PYL7 OS=Arabidopsis thaliana GN=PYL7 PE=1 SV=1

 Score =  264 bits (675), Expect = 3e-70,   Method: Compositional matrix adjust.
 Identities = 129/186 (69%), Positives = 147/186 (79%), Gaps = 17/186 (9%)

Query: 26  IKRHHKHDVHDHQCSSSLVKHIKAPVHLVWSLVRRFDQPQKYKPFVSRCIVQGDLQIGSV 85
           ++  H H   ++QC+S LVK+I+APVHLVWSLVRRFDQPQKYKPF+SRC V GD +IG +
Sbjct: 23  LRLRHLHHCRENQCTSVLVKYIQAPVHLVWSLVRRFDQPQKYKPFISRCTVNGDPEIGCL 82

Query: 86  REVNVKSGLPATTSTERLELLDDEEHIFGMRIVGGDHRLKIIWNFSNFISTSSSKLQNYS 145
           REVNVKSGLPATTSTERLE LDDEEHI G+ I+GGDHRLK                 NYS
Sbjct: 83  REVNVKSGLPATTSTERLEQLDDEEHILGINIIGGDHRLK-----------------NYS 125

Query: 146 SIVTVHPEVIDGRPGTLVIESFVVDVPDGNTKDETCYFVEALIKCNLKSLADVSEHLAVQ 205
           SI+TVHPE+IDGR GT+V+ESFVVDVP GNTKD+TCYFVE+LIKCNLKSLA VSE LA Q
Sbjct: 126 SILTVHPEMIDGRSGTMVMESFVVDVPQGNTKDDTCYFVESLIKCNLKSLACVSERLAAQ 185

Query: 206 DRTEPI 211
           D T  I
Sbjct: 186 DITNSI 191

Receptor for abscisic acid (ABA) required for ABA-mediated responses such as stomatal closure and germination inhibition. Inhibits the activity of group-A protein phosphatases type 2C (PP2Cs) when activated by ABA.

Arabidopsis thaliana (taxid: 3702)

>sp|Q8H1R0|PYL10_ARATH Abscisic acid receptor PYL10 OS=Arabidopsis thaliana GN=PYL10 PE=1 SV=1

 Score =  261 bits (668), Expect = 2e-69,   Method: Compositional matrix adjust.
 Identities = 124/193 (64%), Positives = 154/193 (79%), Gaps = 18/193 (9%)

Query: 20  KIEEDYIKRHHKHDVHDHQCSSSLVKHIKAPVHLVWSLVRRFDQPQKYKPFVSRCIVQG- 78
           K+E +YIK+HH+H++ + QCSS+LVKHIKAP+HLVWS+VRRFD+PQKYKPF+SRC+VQG 
Sbjct: 8   KVESEYIKKHHRHELVESQCSSTLVKHIKAPLHLVWSIVRRFDEPQKYKPFISRCVVQGK 67

Query: 79  DLQIGSVREVNVKSGLPATTSTERLELLDDEEHIFGMRIVGGDHRLKIIWNFSNFISTSS 138
            L++GSVREV++KSGLPAT STE LE+LDD EHI G+RIVGGDHRLK             
Sbjct: 68  KLEVGSVREVDLKSGLPATKSTEVLEILDDNEHILGIRIVGGDHRLK------------- 114

Query: 139 SKLQNYSSIVTVHPEVIDGRPGTLVIESFVVDVPDGNTKDETCYFVEALIKCNLKSLADV 198
               NYSS +++H E IDG+ GTL IESFVVDVP+GNTK+ETC+FVEALI+CNL SLADV
Sbjct: 115 ----NYSSTISLHSETIDGKTGTLAIESFVVDVPEGNTKEETCFFVEALIQCNLNSLADV 170

Query: 199 SEHLAVQDRTEPI 211
           +E L  +   + I
Sbjct: 171 TERLQAESMEKKI 183

Receptor for abscisic acid (ABA) required for ABA-mediated responses such as stomatal closure and germination inhibition. Inhibits the activity of group-A protein phosphatases type 2C (PP2Cs) when activated by ABA.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9FLB1|PYL5_ARATH Abscisic acid receptor PYL5 OS=Arabidopsis thaliana GN=PYL5 PE=1 SV=1

 Score =  166 bits (420), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 87/175 (49%), Positives = 116/175 (66%), Gaps = 22/175 (12%)

Query: 24  DYIKRHHKHDVHDHQCSSSLVKHIKAPVHLVWSLVRRFDQPQKYKPFVSRC-IVQGD-LQ 81
           +++  HH HDV   QC SS+V+ I AP   VW+LVRRFD P+ YK F+ +C IVQGD L 
Sbjct: 43  EHVAMHHTHDVGPDQCCSSVVQMIHAPPESVWALVRRFDNPKVYKNFIRQCRIVQGDGLH 102

Query: 82  IGSVREVNVKSGLPATTSTERLELLDDEEHIFGMRIVGGDHRLKIIWNFSNFISTSSSKL 141
           +G +REV V SGLPA +STERLE+LD+E H+    +VGGDHRLK                
Sbjct: 103 VGDLREVMVVSGLPAVSSTERLEILDEERHVISFSVVGGDHRLK---------------- 146

Query: 142 QNYSSIVTVHPEVIDGRPGTLVIESFVVDVPDGNTKDETCYFVEALIKCNLKSLA 196
            NY S+ T+H        GT+V+ES++VDVP GNT++ET  FV+ +++CNL+SLA
Sbjct: 147 -NYRSVTTLH---ASDDEGTVVVESYIVDVPPGNTEEETLSFVDTIVRCNLQSLA 197

Receptor for abscisic acid (ABA) required for ABA-mediated responses such as stomatal closure and germination inhibition. Inhibits the activity of group-A protein phosphatases type 2C (PP2Cs) when activated by ABA. Confers enhanced sensitivity to ABA.

Arabidopsis thaliana (taxid: 3702)

>sp|O80920|PYL4_ARATH Abscisic acid receptor PYL4 OS=Arabidopsis thaliana GN=PYL4 PE=1 SV=1

 Score =  160 bits (404), Expect = 8e-39,   Method: Compositional matrix adjust.
 Identities = 87/182 (47%), Positives = 123/182 (67%), Gaps = 22/182 (12%)

Query: 28  RHHKHDVHDHQCSSSLVKHIKAPVHLVWSLVRRFDQPQKYKPFVSRC-IVQGDL-QIGSV 85
           R H H+V  +QC S++++ I AP+  VWS+VRRFD PQ YK F+  C ++ GD   +GS+
Sbjct: 41  RFHTHEVGPNQCCSAVIQEISAPISTVWSVVRRFDNPQAYKHFLKSCSVIGGDGDNVGSL 100

Query: 86  REVNVKSGLPATTSTERLELLDDEEHIFGMRIVGGDHRLKIIWNFSNFISTSSSKLQNYS 145
           R+V+V SGLPA +STERL++LDDE H+    +VGGDHRL                  NY 
Sbjct: 101 RQVHVVSGLPAASSTERLDILDDERHVISFSVVGGDHRLS-----------------NYR 143

Query: 146 SIVTVHPEVIDGRPGTLVIESFVVDVPDGNTKDETCYFVEALIKCNLKSLADVSEHLAVQ 205
           S+ T+HP  I G   T+V+ES+VVDVP GNTK+ETC FV+ +++CNL+SLA ++E+ A +
Sbjct: 144 SVTTLHPSPISG---TVVVESYVVDVPPGNTKEETCDFVDVIVRCNLQSLAKIAENTAAE 200

Query: 206 DR 207
            +
Sbjct: 201 SK 202

Receptor for abscisic acid (ABA) required for ABA-mediated responses such as stomatal closure and germination inhibition. Inhibits the activity of group-A protein phosphatases type 2C (PP2Cs) when activated by ABA.

Arabidopsis thaliana (taxid: 3702)

>sp|Q8S8E3|PYL6_ARATH Abscisic acid receptor PYL6 OS=Arabidopsis thaliana GN=PYL6 PE=1 SV=1

 Score =  159 bits (401), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 84/184 (45%), Positives = 117/184 (63%), Gaps = 21/184 (11%)

Query: 24  DYIKRHHKHDVHDHQCSSSLVKHIKAPVHLVWSLVRRFDQPQKYKPFVSRC-IVQGD-LQ 81
           ++++  H H V   QC S +V+ ++APV  VWS++ RF+ PQ YK FV  C +V GD  +
Sbjct: 46  EHVELSHTHVVGPSQCFSVVVQDVEAPVSTVWSILSRFEHPQAYKHFVKSCHVVIGDGRE 105

Query: 82  IGSVREVNVKSGLPATTSTERLELLDDEEHIFGMRIVGGDHRLKIIWNFSNFISTSSSKL 141
           +GSVREV V SGLPA  S ERLE++DD+ H+    +VGGDHR                 L
Sbjct: 106 VGSVREVRVVSGLPAAFSLERLEIMDDDRHVISFSVVGGDHR-----------------L 148

Query: 142 QNYSSIVTVH--PEVIDGRPGTLVIESFVVDVPDGNTKDETCYFVEALIKCNLKSLADVS 199
            NY S+ TVH   E  DG+  T V+ES+VVDVP GN K+ETC F + +++CNL+SLA ++
Sbjct: 149 MNYKSVTTVHESEEDSDGKKRTRVVESYVVDVPAGNDKEETCSFADTIVRCNLQSLAKLA 208

Query: 200 EHLA 203
           E+ +
Sbjct: 209 ENTS 212

Receptor for abscisic acid (ABA) required for ABA-mediated responses such as stomatal closure and germination inhibition. Inhibits the activity of group-A protein phosphatases type 2C (PP2Cs) when activated by ABA.

Arabidopsis thaliana (taxid: 3702)

>sp|O80992|PYL2_ARATH Abscisic acid receptor PYL2 OS=Arabidopsis thaliana GN=PYL2 PE=1 SV=1

 Score =  150 bits (380), Expect = 5e-36,   Method: Compositional matrix adjust.
 Identities = 79/191 (41%), Positives = 118/191 (61%), Gaps = 22/191 (11%)

Query: 20  KIEEDYIKRHHKHDVHDHQCSSSLVKHIKAPVHLVWSLVRRFDQPQKYKPFVSRC-IVQG 78
           K  E  IK +H+ +     C+S + + I AP  +VW L+RRFD P++YK FV RC ++ G
Sbjct: 16  KTLEPVIKTYHQFEPDPTTCTSLITQRIHAPASVVWPLIRRFDNPERYKHFVKRCRLISG 75

Query: 79  DLQIGSVREVNVKSGLPATTSTERLELLDDEEHIFGMRIVGGDHRLKIIWNFSNFISTSS 138
           D  +GSVREV V SGLPA+TSTERLE +DD+  +   R+VGG+HRLK             
Sbjct: 76  DGDVGSVREVTVISGLPASTSTERLEFVDDDHRVLSFRVVGGEHRLK------------- 122

Query: 139 SKLQNYSSIVTVHPEVID---GRPGTLVIESFVVDVPDGNTKDETCYFVEALIKCNLKSL 195
               NY S+ +V+ E ++   G+  T+V+ES+ VD+P+GNT+++T  FV+ ++K NL+ L
Sbjct: 123 ----NYKSVTSVN-EFLNQDSGKVYTVVLESYTVDIPEGNTEEDTKMFVDTVVKLNLQKL 177

Query: 196 ADVSEHLAVQD 206
              +    + D
Sbjct: 178 GVAATSAPMHD 188

Receptor for abscisic acid (ABA) required for ABA-mediated responses such as stomatal closure and germination inhibition. Inhibits the activity of group-A protein phosphatases type 2C (PP2Cs) when activated by ABA.

Arabidopsis thaliana (taxid: 3702)

>sp|O49686|PYR1_ARATH Abscisic acid receptor PYR1 OS=Arabidopsis thaliana GN=PYR1 PE=1 SV=1

 Score =  149 bits (377), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 78/183 (42%), Positives = 113/183 (61%), Gaps = 19/183 (10%)

Query: 23  EDYIKRHHKHDVHDHQCSSSLVKHIKAPVHLVWSLVRRFDQPQKYKPFVSRCIVQG--DL 80
           ++ I   H + +    CSS   + I AP  LVWS+VRRFD+PQ YK F+  C V+   ++
Sbjct: 14  KNSIAEFHTYQLDPGSCSSLHAQRIHAPPELVWSIVRRFDKPQTYKHFIKSCSVEQNFEM 73

Query: 81  QIGSVREVNVKSGLPATTSTERLELLDDEEHIFGMRIVGGDHRLKIIWNFSNFISTSSSK 140
           ++G  R+V V SGLPA TSTERL++LDDE  + G  I+GG+HRL                
Sbjct: 74  RVGCTRDVIVISGLPANTSTERLDILDDERRVTGFSIIGGEHRLT--------------- 118

Query: 141 LQNYSSIVTVHPEVIDGRPGTLVIESFVVDVPDGNTKDETCYFVEALIKCNLKSLADVSE 200
             NY S+ TVH    + R  T+V+ES+VVD+P+GN++D+T  F + ++K NL+ LA V+E
Sbjct: 119 --NYKSVTTVHRFEKENRIWTVVLESYVVDMPEGNSEDDTRMFADTVVKLNLQKLATVAE 176

Query: 201 HLA 203
            +A
Sbjct: 177 AMA 179

Receptor for abscisic acid (ABA) required for ABA-mediated responses such as stomatal closure and germination inhibition. Inhibits the activity of group-A protein phosphatases type 2C (PP2Cs) when activated by ABA.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9SSM7|PYL3_ARATH Abscisic acid receptor PYL3 OS=Arabidopsis thaliana GN=PYL3 PE=1 SV=1

 Score =  131 bits (329), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 67/185 (36%), Positives = 109/185 (58%), Gaps = 28/185 (15%)

Query: 26  IKRHHKHDVHDHQCSSSLVKHIKAPVHLVWSLVRRFDQPQKYKPFVSRCIVQ------GD 79
           I+ HH      + C+S +   + AP H +W  VR F  P KYK F+  C ++       +
Sbjct: 37  IRTHHTFPRSPNTCTSLIAHRVDAPAHAIWRFVRDFANPNKYKHFIKSCTIRVNGNGIKE 96

Query: 80  LQIGSVREVNVKSGLPATTSTERLELLDDEEHIFGMRIVGGDHRLKIIWNFSNFISTSSS 139
           +++G++REV+V SGLPA+TS E LE+LD+E+ I   R++GG+HR                
Sbjct: 97  IKVGTIREVSVVSGLPASTSVEILEVLDEEKRILSFRVLGGEHR---------------- 140

Query: 140 KLQNYSSIVTVHPEVI-----DGRPGTLVIESFVVDVPDGNTKDETCYFVEALIKCNLKS 194
            L NY S+ +V+  V+       R  ++V+ES++VD+P GNT+++T  FV+ ++K NL++
Sbjct: 141 -LNNYRSVTSVNEFVVLEKDKKKRVYSVVLESYIVDIPQGNTEEDTRMFVDTVVKSNLQN 199

Query: 195 LADVS 199
           LA +S
Sbjct: 200 LAVIS 204

Receptor for abscisic acid (ABA) required for ABA-mediated responses such as stomatal closure and germination inhibition. Inhibits the activity of group-A protein phosphatases type 2C (PP2Cs) when activated by ABA.

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	214
255537767	196	conserved hypothetical protein [Ricinus	0.915	1.0	0.802	7e-94
224075088	190	predicted protein [Populus trichocarpa]	0.887	1.0	0.802	2e-92
224053789	190	predicted protein [Populus trichocarpa]	0.883	0.994	0.806	1e-91
297742323	185	unnamed protein product [Vitis vinifera]	0.845	0.978	0.825	5e-90
255545038	195	conserved hypothetical protein [Ricinus	0.859	0.943	0.766	3e-86
224120638	191	predicted protein [Populus trichocarpa]	0.864	0.968	0.758	6e-85
224132952	191	predicted protein [Populus trichocarpa]	0.864	0.968	0.763	6e-85
358347381	190	Abscisic acid receptor PYL9 [Medicago tr	0.864	0.973	0.757	4e-84
302143675	185	unnamed protein product [Vitis vinifera]	0.845	0.978	0.737	6e-83
104304209	185	PIP1 [Capsicum annuum]	0.855	0.989	0.745	2e-82

>gi|255537767|ref|XP_002509950.1| conserved hypothetical protein [Ricinus communis] gi|223549849|gb|EEF51337.1| conserved hypothetical protein [Ricinus communis]

 Score =  348 bits (893), Expect = 7e-94,   Method: Compositional matrix adjust.
 Identities = 171/213 (80%), Positives = 181/213 (84%), Gaps = 17/213 (7%)

Query: 2   MVTNDYITVNGSGSGGFGKIEEDYIKRHHKHDVHDHQCSSSLVKHIKAPVHLVWSLVRRF 61
           MV  DYITV  + +  F K+E+DYI+RHHKHDV DHQCSSSLVKHIKAPVHLVWSLVRRF
Sbjct: 1   MVAGDYITVLNTNNNIFSKMEDDYIRRHHKHDVKDHQCSSSLVKHIKAPVHLVWSLVRRF 60

Query: 62  DQPQKYKPFVSRCIVQGDLQIGSVREVNVKSGLPATTSTERLELLDDEEHIFGMRIVGGD 121
           DQPQ+YKPFVSRCI QGDLQIGS+REVNVKSGLPATTSTERLELLDDEEHIF M IVGGD
Sbjct: 61  DQPQRYKPFVSRCIAQGDLQIGSLREVNVKSGLPATTSTERLELLDDEEHIFRMTIVGGD 120

Query: 122 HRLKIIWNFSNFISTSSSKLQNYSSIVTVHPEVIDGRPGTLVIESFVVDVPDGNTKDETC 181
           HRLK                 NYSSI+TVHPEVIDGRPGT+ IESFVVDVPDGNTKDETC
Sbjct: 121 HRLK-----------------NYSSIITVHPEVIDGRPGTMAIESFVVDVPDGNTKDETC 163

Query: 182 YFVEALIKCNLKSLADVSEHLAVQDRTEPIDRI 214
           YFVEALIKCNL SLA+VSEHLAV DRTEPIDRI
Sbjct: 164 YFVEALIKCNLTSLANVSEHLAVHDRTEPIDRI 196

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224075088|ref|XP_002304553.1| predicted protein [Populus trichocarpa] gi|222841985|gb|EEE79532.1| predicted protein [Populus trichocarpa]

 Score =  343 bits (881), Expect = 2e-92,   Method: Compositional matrix adjust.
 Identities = 171/213 (80%), Positives = 182/213 (85%), Gaps = 23/213 (10%)

Query: 2   MVTNDYITVNGSGSGGFGKIEEDYIKRHHKHDVHDHQCSSSLVKHIKAPVHLVWSLVRRF 61
           MVTNDY+T+        GK+E+++IKRHHKHDV +HQCSSSLVKHIKAPV LVWSLVRRF
Sbjct: 1   MVTNDYVTIAS------GKMEDEFIKRHHKHDVKEHQCSSSLVKHIKAPVPLVWSLVRRF 54

Query: 62  DQPQKYKPFVSRCIVQGDLQIGSVREVNVKSGLPATTSTERLELLDDEEHIFGMRIVGGD 121
           DQPQKYKPFVSRC+VQGDLQIGSVREVNVKSGLPATTSTERLELLDDEEHIF M+IVGGD
Sbjct: 55  DQPQKYKPFVSRCVVQGDLQIGSVREVNVKSGLPATTSTERLELLDDEEHIFSMKIVGGD 114

Query: 122 HRLKIIWNFSNFISTSSSKLQNYSSIVTVHPEVIDGRPGTLVIESFVVDVPDGNTKDETC 181
           HRLK                 NY S VTVHPEVIDGRPGTLVIESF+VDVPDGNTKDETC
Sbjct: 115 HRLK-----------------NYLSTVTVHPEVIDGRPGTLVIESFIVDVPDGNTKDETC 157

Query: 182 YFVEALIKCNLKSLADVSEHLAVQDRTEPIDRI 214
           YFVEALIKCNLKSLADVSE LAVQDRTEPIDR+
Sbjct: 158 YFVEALIKCNLKSLADVSERLAVQDRTEPIDRM 190

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224053789|ref|XP_002297980.1| predicted protein [Populus trichocarpa] gi|222845238|gb|EEE82785.1| predicted protein [Populus trichocarpa]

 Score =  341 bits (875), Expect = 1e-91,   Method: Compositional matrix adjust.
 Identities = 171/212 (80%), Positives = 181/212 (85%), Gaps = 23/212 (10%)

Query: 2   MVTNDYITVNGSGSGGFGKIEEDYIKRHHKHDVHDHQCSSSLVKHIKAPVHLVWSLVRRF 61
           MVTNDY+T+        G +E+++IKRHHKHDV +HQCSSSLVKHIKAPV LVWSLVRRF
Sbjct: 1   MVTNDYVTIAN------GMMEDEFIKRHHKHDVKEHQCSSSLVKHIKAPVPLVWSLVRRF 54

Query: 62  DQPQKYKPFVSRCIVQGDLQIGSVREVNVKSGLPATTSTERLELLDDEEHIFGMRIVGGD 121
           DQPQKYKPFVSRCI QGDLQIGSVREVNVKSGLPATTSTERLELLDD+EHIFGM+IVGGD
Sbjct: 55  DQPQKYKPFVSRCIAQGDLQIGSVREVNVKSGLPATTSTERLELLDDDEHIFGMKIVGGD 114

Query: 122 HRLKIIWNFSNFISTSSSKLQNYSSIVTVHPEVIDGRPGTLVIESFVVDVPDGNTKDETC 181
           HRLK                 NYSSIVTVHP+VIDGRPGTLVIESFVVDVPDGNTKDETC
Sbjct: 115 HRLK-----------------NYSSIVTVHPKVIDGRPGTLVIESFVVDVPDGNTKDETC 157

Query: 182 YFVEALIKCNLKSLADVSEHLAVQDRTEPIDR 213
           YFVEALIKCNLKSLADVSE LAVQ RTEPIDR
Sbjct: 158 YFVEALIKCNLKSLADVSERLAVQGRTEPIDR 189

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297742323|emb|CBI34472.3| unnamed protein product [Vitis vinifera]

 Score =  335 bits (860), Expect = 5e-90,   Method: Compositional matrix adjust.
 Identities = 165/200 (82%), Positives = 178/200 (89%), Gaps = 19/200 (9%)

Query: 17  GFG--KIEEDYIKRHHKHDVHDHQCSSSLVKHIKAPVHLVWSLVRRFDQPQKYKPFVSRC 74
           G+G  K+E++YI+RHH+H++ D+QCSSSLVKHIKAPVHLVWSLVR FDQPQKYKPFVSRC
Sbjct: 3   GYGCIKMEDEYIRRHHRHEIRDNQCSSSLVKHIKAPVHLVWSLVRSFDQPQKYKPFVSRC 62

Query: 75  IVQGDLQIGSVREVNVKSGLPATTSTERLELLDDEEHIFGMRIVGGDHRLKIIWNFSNFI 134
           IVQGDL+IGSVREVNVKSGLPATTSTERLELLDDEEHIFGMRIVGGDHRLK         
Sbjct: 63  IVQGDLEIGSVREVNVKSGLPATTSTERLELLDDEEHIFGMRIVGGDHRLK--------- 113

Query: 135 STSSSKLQNYSSIVTVHPEVIDGRPGTLVIESFVVDVPDGNTKDETCYFVEALIKCNLKS 194
                   NYSSIVTVHPE+IDGRPGTLVIESFVVDVPDGNTKDETCYFVEALIKCNLKS
Sbjct: 114 --------NYSSIVTVHPEIIDGRPGTLVIESFVVDVPDGNTKDETCYFVEALIKCNLKS 165

Query: 195 LADVSEHLAVQDRTEPIDRI 214
           LADVSE LA+QDRTEPIDR+
Sbjct: 166 LADVSERLAIQDRTEPIDRM 185

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255545038|ref|XP_002513580.1| conserved hypothetical protein [Ricinus communis] gi|223547488|gb|EEF48983.1| conserved hypothetical protein [Ricinus communis]

 Score =  323 bits (827), Expect = 3e-86,   Method: Compositional matrix adjust.
 Identities = 154/201 (76%), Positives = 172/201 (85%), Gaps = 17/201 (8%)

Query: 14  GSGGFGKIEEDYIKRHHKHDVHDHQCSSSLVKHIKAPVHLVWSLVRRFDQPQKYKPFVSR 73
           G+G  G +E +Y++RHH+HD  DHQCSS+LVKHIKAPVHLVWSLVRRFDQPQKYKPF+SR
Sbjct: 12  GNGIIGSVESEYVRRHHRHDPADHQCSSALVKHIKAPVHLVWSLVRRFDQPQKYKPFISR 71

Query: 74  CIVQGDLQIGSVREVNVKSGLPATTSTERLELLDDEEHIFGMRIVGGDHRLKIIWNFSNF 133
           C+ QG+LQIGS+RE++VKSGLPATTSTERLE LDD+EHI  MRIVGGDHRLK        
Sbjct: 72  CVAQGNLQIGSLREIDVKSGLPATTSTERLEFLDDDEHILSMRIVGGDHRLK-------- 123

Query: 134 ISTSSSKLQNYSSIVTVHPEVIDGRPGTLVIESFVVDVPDGNTKDETCYFVEALIKCNLK 193
                    NYSSI+++HPE+IDGRPGTLVIESFVVDVPDGNTKDETCYFVEALIKCNLK
Sbjct: 124 ---------NYSSIISLHPEIIDGRPGTLVIESFVVDVPDGNTKDETCYFVEALIKCNLK 174

Query: 194 SLADVSEHLAVQDRTEPIDRI 214
           SLADVSE LAVQDRTEPID I
Sbjct: 175 SLADVSERLAVQDRTEPIDCI 195

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224120638|ref|XP_002318380.1| predicted protein [Populus trichocarpa] gi|222859053|gb|EEE96600.1| predicted protein [Populus trichocarpa]

 Score =  319 bits (817), Expect = 6e-85,   Method: Compositional matrix adjust.
 Identities = 154/203 (75%), Positives = 175/203 (86%), Gaps = 18/203 (8%)

Query: 11  NGSGSGGFGKIEEDYIKRHHKH-DVHDHQCSSSLVKHIKAPVHLVWSLVRRFDQPQKYKP 69
           N +G GG G +E +YI+RHHKH D+ DHQCSS+LVKHIKAPVHLVWSLVRRFDQPQKYKP
Sbjct: 4   NSNGRGGIGSVESEYIRRHHKHGDLADHQCSSALVKHIKAPVHLVWSLVRRFDQPQKYKP 63

Query: 70  FVSRCIVQGDLQIGSVREVNVKSGLPATTSTERLELLDDEEHIFGMRIVGGDHRLKIIWN 129
           F+SRC+V G+L+IGS+REV+V+SGLPATTSTERLELLDD+EHIF +RIVGGDHRLK    
Sbjct: 64  FISRCVVLGNLEIGSLREVDVRSGLPATTSTERLELLDDDEHIFSIRIVGGDHRLK---- 119

Query: 130 FSNFISTSSSKLQNYSSIVTVHPEVIDGRPGTLVIESFVVDVPDGNTKDETCYFVEALIK 189
                        NYSS++++HPE+IDGRPGTLVIESFVVDVPDGNTKDETCYFVEALIK
Sbjct: 120 -------------NYSSVISLHPEIIDGRPGTLVIESFVVDVPDGNTKDETCYFVEALIK 166

Query: 190 CNLKSLADVSEHLAVQDRTEPID 212
           CNLKSLADVSE  AVQDRTEPI+
Sbjct: 167 CNLKSLADVSESHAVQDRTEPIE 189

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224132952|ref|XP_002321450.1| predicted protein [Populus trichocarpa] gi|222868446|gb|EEF05577.1| predicted protein [Populus trichocarpa]

 Score =  318 bits (816), Expect = 6e-85,   Method: Compositional matrix adjust.
 Identities = 155/203 (76%), Positives = 174/203 (85%), Gaps = 18/203 (8%)

Query: 11  NGSGSGGFGKIEEDYIKRHHKHD-VHDHQCSSSLVKHIKAPVHLVWSLVRRFDQPQKYKP 69
           N +G GG G +E +YI+RHH HD + DHQCSS+LVKHIKAPV LVWSLVRRFDQPQKYKP
Sbjct: 4   NCNGRGGIGCVESEYIRRHHTHDDLADHQCSSALVKHIKAPVQLVWSLVRRFDQPQKYKP 63

Query: 70  FVSRCIVQGDLQIGSVREVNVKSGLPATTSTERLELLDDEEHIFGMRIVGGDHRLKIIWN 129
           F+SRC+V G+L+IGS+REV+V+SGLPATTSTERLELLDD+EHI  +RIVGGDHRLK    
Sbjct: 64  FISRCVVLGNLEIGSLREVDVRSGLPATTSTERLELLDDDEHILSIRIVGGDHRLK---- 119

Query: 130 FSNFISTSSSKLQNYSSIVTVHPEVIDGRPGTLVIESFVVDVPDGNTKDETCYFVEALIK 189
                        NYSSI+++HPE+IDGRPGTLVIESFVVDVPDGNTKDETCYFVEALIK
Sbjct: 120 -------------NYSSIISLHPEIIDGRPGTLVIESFVVDVPDGNTKDETCYFVEALIK 166

Query: 190 CNLKSLADVSEHLAVQDRTEPID 212
           CNLKSLADVSEHLAVQDRTEPID
Sbjct: 167 CNLKSLADVSEHLAVQDRTEPID 189

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|358347381|ref|XP_003637736.1| Abscisic acid receptor PYL9 [Medicago truncatula] gi|355503671|gb|AES84874.1| Abscisic acid receptor PYL9 [Medicago truncatula] gi|388519467|gb|AFK47795.1| unknown [Medicago truncatula]

 Score =  316 bits (810), Expect = 4e-84,   Method: Compositional matrix adjust.
 Identities = 153/202 (75%), Positives = 169/202 (83%), Gaps = 17/202 (8%)

Query: 11  NGSGSGGFGKIEEDYIKRHHKHDVHDHQCSSSLVKHIKAPVHLVWSLVRRFDQPQKYKPF 70
           NG     +  IE  YI+RHHKHD+ D+QCSS+LVKHIKAPVHLVWSLVRRFDQPQKYKPF
Sbjct: 3   NGCEQQQYSVIETQYIRRHHKHDLRDNQCSSALVKHIKAPVHLVWSLVRRFDQPQKYKPF 62

Query: 71  VSRCIVQGDLQIGSVREVNVKSGLPATTSTERLELLDDEEHIFGMRIVGGDHRLKIIWNF 130
           +SRCI+QGDL IGSVREVNVKSGLPATTSTERLE LDDEEHI G+RIVGGDHRL+     
Sbjct: 63  ISRCIMQGDLSIGSVREVNVKSGLPATTSTERLEQLDDEEHILGIRIVGGDHRLR----- 117

Query: 131 SNFISTSSSKLQNYSSIVTVHPEVIDGRPGTLVIESFVVDVPDGNTKDETCYFVEALIKC 190
                       NYSSI+TVHPEVIDGRPGT+VIESFVVDVP+GNTKDETCYFVEALI+C
Sbjct: 118 ------------NYSSIITVHPEVIDGRPGTMVIESFVVDVPEGNTKDETCYFVEALIRC 165

Query: 191 NLKSLADVSEHLAVQDRTEPID 212
           NL SLADVSE +AVQ RT+PI+
Sbjct: 166 NLSSLADVSERMAVQGRTDPIN 187

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|302143675|emb|CBI22536.3| unnamed protein product [Vitis vinifera]

 Score =  312 bits (800), Expect = 6e-83,   Method: Compositional matrix adjust.
 Identities = 146/198 (73%), Positives = 171/198 (86%), Gaps = 17/198 (8%)

Query: 17  GFGKIEEDYIKRHHKHDVHDHQCSSSLVKHIKAPVHLVWSLVRRFDQPQKYKPFVSRCIV 76
           G   +E +YI+RHH+H+  ++QCSS+LVKHIKAPV LVWSLVRRFDQPQKYKPF+SRC+V
Sbjct: 5   GLSSMESEYIRRHHRHEPAENQCSSALVKHIKAPVPLVWSLVRRFDQPQKYKPFISRCVV 64

Query: 77  QGDLQIGSVREVNVKSGLPATTSTERLELLDDEEHIFGMRIVGGDHRLKIIWNFSNFIST 136
           QG+L+IGS+REV+VKSGLPATTSTERLELLDD+EHI  MRI+GGDHRL+           
Sbjct: 65  QGNLEIGSLREVDVKSGLPATTSTERLELLDDDEHILSMRIIGGDHRLR----------- 113

Query: 137 SSSKLQNYSSIVTVHPEVIDGRPGTLVIESFVVDVPDGNTKDETCYFVEALIKCNLKSLA 196
                 NYSSI+++HPE+IDGRPGT+VIES+VVDVP+GNTKDETCYFVEALIKCNLKSLA
Sbjct: 114 ------NYSSIISLHPEIIDGRPGTMVIESYVVDVPEGNTKDETCYFVEALIKCNLKSLA 167

Query: 197 DVSEHLAVQDRTEPIDRI 214
           DVSE LAVQDRTEPIDR+
Sbjct: 168 DVSERLAVQDRTEPIDRM 185

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|104304209|gb|ABF72432.1| PIP1 [Capsicum annuum]

 Score =  310 bits (795), Expect = 2e-82,   Method: Compositional matrix adjust.
 Identities = 149/200 (74%), Positives = 168/200 (84%), Gaps = 17/200 (8%)

Query: 15  SGGFGKIEEDYIKRHHKHDVHDHQCSSSLVKHIKAPVHLVWSLVRRFDQPQKYKPFVSRC 74
           + GF  +E++YI++HH H   ++QCSS LVKHI+APVHLVWSLVRRFDQPQKYKPFVSRC
Sbjct: 3   ANGFSGVEKEYIRKHHLHQPKENQCSSFLVKHIRAPVHLVWSLVRRFDQPQKYKPFVSRC 62

Query: 75  IVQGDLQIGSVREVNVKSGLPATTSTERLELLDDEEHIFGMRIVGGDHRLKIIWNFSNFI 134
           I QGDL+IGS+REV+VKSGLPATTSTERLELLDDEEHI   RI+GGDHRL+         
Sbjct: 63  IAQGDLEIGSLREVDVKSGLPATTSTERLELLDDEEHILSFRIIGGDHRLR--------- 113

Query: 135 STSSSKLQNYSSIVTVHPEVIDGRPGTLVIESFVVDVPDGNTKDETCYFVEALIKCNLKS 194
                   NYSSI+++HPEVIDGRPGTLVIESFVVDVP GNTKDETCYFVEALI CNLKS
Sbjct: 114 --------NYSSIISLHPEVIDGRPGTLVIESFVVDVPQGNTKDETCYFVEALINCNLKS 165

Query: 195 LADVSEHLAVQDRTEPIDRI 214
           LADVSE LAVQDRTEPID++
Sbjct: 166 LADVSERLAVQDRTEPIDQV 185

Source: Capsicum annuum

Species: Capsicum annuum

Genus: Capsicum

Family: Solanaceae

Order: Solanales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	214
TAIR|locus:2132917	183	PYL10 "PYR1-like 10" [Arabidop	0.817	0.956	0.642	2e-63
TAIR|locus:2163731	188	RCAR3 "regulatory components o	0.616	0.702	0.637	1.2e-44
TAIR|locus:2035227	187	RCAR1 "regulatory component of	0.668	0.764	0.601	3.9e-44
TAIR|locus:505006424	211	PYL7 "PYR1-like 7" [Arabidopsi	0.714	0.725	0.537	1.1e-39
TAIR|locus:2063063	215	PYL6 "PYR1-like 6" [Arabidopsi	0.789	0.786	0.438	9.2e-36
TAIR|locus:2152420	161	PYL11 "AT5G45860" [Arabidopsis	0.411	0.546	0.595	5e-35
TAIR|locus:2057407	190	PYL2 "PYR1-like 2" [Arabidopsi	0.803	0.905	0.420	8.3e-35
TAIR|locus:2178585	221	PYL1 "PYR1-like 1" [Arabidopsi	0.752	0.728	0.418	6.9e-31
TAIR|locus:2153549	203	PYL5 "PYRABACTIN RESISTANCE 1-	0.649	0.684	0.476	1.6e-29
TAIR|locus:2032738	209	PYL3 "AT1G73000" [Arabidopsis	0.836	0.856	0.349	9.1e-29

TAIR|locus:2132917 PYL10 "PYR1-like 10" [Arabidopsis thaliana (taxid:3702)]

 Score = 647 (232.8 bits), Expect = 2.0e-63, P = 2.0e-63
 Identities = 124/193 (64%), Positives = 154/193 (79%)

Query:    20 KIEEDYIKRHHKHDVHDHQCSSSLVKHIKAPVHLVWSLVRRFDQPQKYKPFVSRCIVQGD 79
             K+E +YIK+HH+H++ + QCSS+LVKHIKAP+HLVWS+VRRFD+PQKYKPF+SRC+VQG 
Sbjct:     8 KVESEYIKKHHRHELVESQCSSTLVKHIKAPLHLVWSIVRRFDEPQKYKPFISRCVVQGK 67

Query:    80 -LQIGSVREVNVKSGLPATTSTERLELLDDEEHIFGMRIVGGDHRLKIIWNFSNFISTSS 138
              L++GSVREV++KSGLPAT STE LE+LDD EHI G+RIVGGDHRLK             
Sbjct:    68 KLEVGSVREVDLKSGLPATKSTEVLEILDDNEHILGIRIVGGDHRLK------------- 114

Query:   139 SKLQNYSSIVTVHPEVIDGRPGTLVIESFVVDVPDGNTKDETCYFVEALIKCNLKSLADV 198
                 NYSS +++H E IDG+ GTL IESFVVDVP+GNTK+ETC+FVEALI+CNL SLADV
Sbjct:   115 ----NYSSTISLHSETIDGKTGTLAIESFVVDVPEGNTKEETCFFVEALIQCNLNSLADV 170

Query:   199 SEHLAVQDRTEPI 211
             +E L  +   + I
Sbjct:   171 TERLQAESMEKKI 183

GO:0005634 "nucleus" evidence=ISM

GO:0005515 "protein binding" evidence=IPI

GO:0004864 "protein phosphatase inhibitor activity" evidence=IDA

GO:0080163 "regulation of protein serine/threonine phosphatase activity" evidence=IDA

TAIR|locus:2163731 RCAR3 "regulatory components of ABA receptor 3" [Arabidopsis thaliana (taxid:3702)]

 Score = 470 (170.5 bits), Expect = 1.2e-44, P = 1.2e-44
 Identities = 86/135 (63%), Positives = 110/135 (81%)

Query:    22 EEDYIKRHHKHDVHDHQCSSSLVKHIKAPVHLVWSLVRRFDQPQKYKPFVSRCIVQGDLQ 81
             E ++I+RHHKH++ D+QCSS+LVKHI APVH+VWSLVRRFDQPQKYKPF+SRC+V+G+++
Sbjct:    15 EREFIRRHHKHELVDNQCSSTLVKHINAPVHIVWSLVRRFDQPQKYKPFISRCVVKGNME 74

Query:    82 IGSVREVNVKSGLPATTSTERLELLDDEEHIFGMRIVGGDHRLKIIWNFSNFISTSSSKL 141
             IG+VREV+VKSGLPAT STERLELLDD EHI  +RIVGGDHRLK   N+S+ IS     +
Sbjct:    75 IGTVREVDVKSGLPATRSTERLELLDDNEHILSIRIVGGDHRLK---NYSSIISLHPETI 131

Query:   142 QNYSSIVTVHPEVID 156
             +     + +   V+D
Sbjct:   132 EGRIGTLVIESFVVD 146

GO:0005634 "nucleus" evidence=ISM;IDA

GO:0005739 "mitochondrion" evidence=ISM

GO:0004872 "receptor activity" evidence=IDA

GO:0009738 "abscisic acid mediated signaling pathway" evidence=IDA

GO:0005515 "protein binding" evidence=IPI

GO:0009737 "response to abscisic acid stimulus" evidence=IDA

GO:0005737 "cytoplasm" evidence=IDA

GO:0009789 "positive regulation of abscisic acid mediated signaling pathway" evidence=IMP

TAIR|locus:2035227 RCAR1 "regulatory component of ABA receptor 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 465 (168.7 bits), Expect = 3.9e-44, P = 3.9e-44
 Identities = 89/148 (60%), Positives = 115/148 (77%)

Query:    10 VNGSGSGGFGKIEE-DYIKRHHKHDVHDHQCSSSLVKHIKAPVHLVWSLVRRFDQPQKYK 68
             V G G+  +G +E   Y++ HH+H   ++QC+S+LVKHIKAP+HLVWSLVRRFDQPQKYK
Sbjct:     5 VEG-GTAMYGGLETVQYVRTHHQHLCRENQCTSALVKHIKAPLHLVWSLVRRFDQPQKYK 63

Query:    69 PFVSRCIVQGDLQIGSVREVNVKSGLPATTSTERLELLDDEEHIFGMRIVGGDHRLKIIW 128
             PFVSRC V GD +IGS+REVNVKSGLPATTSTERLELLDDEEHI G++I+GGDHRLK   
Sbjct:    64 PFVSRCTVIGDPEIGSLREVNVKSGLPATTSTERLELLDDEEHILGIKIIGGDHRLK--- 120

Query:   129 NFSNFISTSSSKLQNYSSIVTVHPEVID 156
             N+S+ ++     ++  +  + +   V+D
Sbjct:   121 NYSSILTVHPEIIEGRAGTMVIESFVVD 148

GO:0005634 "nucleus" evidence=ISM

GO:0004872 "receptor activity" evidence=IDA

GO:0005515 "protein binding" evidence=IPI

GO:0009738 "abscisic acid mediated signaling pathway" evidence=IDA

GO:0010427 "abscisic acid binding" evidence=IDA

TAIR|locus:505006424 PYL7 "PYR1-like 7" [Arabidopsis thaliana (taxid:3702)]

 Score = 423 (154.0 bits), Expect = 1.1e-39, P = 1.1e-39
 Identities = 85/158 (53%), Positives = 108/158 (68%)

Query:    26 IKRHHKHDVHDHQCSSSLVKHIKAPVHLVWSLVRRFDQPQKYKPFVSRCIVQGDLQIGSV 85
             ++  H H   ++QC+S LVK+I+APVHLVWSLVRRFDQPQKYKPF+SRC V GD +IG +
Sbjct:    23 LRLRHLHHCRENQCTSVLVKYIQAPVHLVWSLVRRFDQPQKYKPFISRCTVNGDPEIGCL 82

Query:    86 REVNVKSGLPATTSTERLELLDDEEHIFGMRIVGGDHRLKIIWNFSNFISTSSSKLQNYS 145
             REVNVKSGLPATTSTERLE LDDEEHI G+ I+GGDHRLK   N+S+ ++     +   S
Sbjct:    83 REVNVKSGLPATTSTERLEQLDDEEHILGINIIGGDHRLK---NYSSILTVHPEMIDGRS 139

Query:   146 SIVTVHPEVIDGRPGTLVIES--FVVDVPDGNTKDETC 181
               + +   V+D   G    ++  FV  +   N K   C
Sbjct:   140 GTMVMESFVVDVPQGNTKDDTCYFVESLIKCNLKSLAC 177

GO:0005634 "nucleus" evidence=ISM;IPI

GO:0008150 "biological_process" evidence=ND

GO:0005515 "protein binding" evidence=IPI

GO:0010029 "regulation of seed germination" evidence=RCA

TAIR|locus:2063063 PYL6 "PYR1-like 6" [Arabidopsis thaliana (taxid:3702)]

 Score = 386 (140.9 bits), Expect = 9.2e-36, P = 9.2e-36
 Identities = 82/187 (43%), Positives = 117/187 (62%)

Query:    17 GFGKIEEDYIKRHHKHDVHDHQCSSSLVKHIKAPVHLVWSLVRRFDQPQKYKPFVSRC-I 75
             G   + E +++  H H V   QC S +V+ ++APV  VWS++ RF+ PQ YK FV  C +
Sbjct:    40 GMADVPE-HVELSHTHVVGPSQCFSVVVQDVEAPVSTVWSILSRFEHPQAYKHFVKSCHV 98

Query:    76 VQGD-LQIGSVREVNVKSGLPATTSTERLELLDDEEHIFGMRIVGGDHRLKIIWNFSNFI 134
             V GD  ++GSVREV V SGLPA  S ERLE++DD+ H+    +VGGDHRL    N+ +  
Sbjct:    99 VIGDGREVGSVREVRVVSGLPAAFSLERLEIMDDDRHVISFSVVGGDHRLM---NYKSVT 155

Query:   135 STSSSKLQNYSSIVTVHPEVIDGRPGTLVIESFVVDVPDGNTKDETCYFVEALIKCNLKS 194
             +   S+            E  DG+  T V+ES+VVDVP GN K+ETC F + +++CNL+S
Sbjct:   156 TVHESE------------EDSDGKKRTRVVESYVVDVPAGNDKEETCSFADTIVRCNLQS 203

Query:   195 LADVSEH 201
             LA ++E+
Sbjct:   204 LAKLAEN 210

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0005515 "protein binding" evidence=IPI

GO:0010029 "regulation of seed germination" evidence=RCA

TAIR|locus:2152420 PYL11 "AT5G45860" [Arabidopsis thaliana (taxid:3702)]

 Score = 263 (97.6 bits), Expect = 5.0e-35, Sum P(2) = 5.0e-35
 Identities = 53/89 (59%), Positives = 63/89 (70%)

Query:    37 HQCSSSLVKHIKAPVHLVWSLVRRFDQPQKYKPFVSRC-IVQGDLQIGSVREVNVKSGLP 95
             H C S+LV+ I AP+ LVWS++RRFD PQ YK FV  C +  GD   GSVREV V SGLP
Sbjct:     8 HTCGSTLVQTIDAPLSLVWSILRRFDNPQAYKQFVKTCNLSSGDGGEGSVREVTVVSGLP 67

Query:    96 ATTSTERLELLDDEEHIFGMRIVGGDHRL 124
             A  S ERL+ LDDE H+  + I+GGDHRL
Sbjct:    68 AEFSRERLDELDDESHVMMISIIGGDHRL 96

GO:0005575 "cellular_component" evidence=ND

GO:0005515 "protein binding" evidence=IPI

TAIR|locus:2057407 PYL2 "PYR1-like 2" [Arabidopsis thaliana (taxid:3702)]

 Score = 377 (137.8 bits), Expect = 8.3e-35, P = 8.3e-35
 Identities = 79/188 (42%), Positives = 117/188 (62%)

Query:    20 KIEEDYIKRHHKHDVHDHQCSSSLVKHIKAPVHLVWSLVRRFDQPQKYKPFVSRC-IVQG 78
             K  E  IK +H+ +     C+S + + I AP  +VW L+RRFD P++YK FV RC ++ G
Sbjct:    16 KTLEPVIKTYHQFEPDPTTCTSLITQRIHAPASVVWPLIRRFDNPERYKHFVKRCRLISG 75

Query:    79 DLQIGSVREVNVKSGLPATTSTERLELLDDEEHIFGMRIVGGDHRLKIIWNFSNFISTSS 138
             D  +GSVREV V SGLPA+TSTERLE +DD+  +   R+VGG+HRLK   N+ +   TS 
Sbjct:    76 DGDVGSVREVTVISGLPASTSTERLEFVDDDHRVLSFRVVGGEHRLK---NYKSV--TSV 130

Query:   139 SKLQNYSSIVTVHPEVIDGRPGTLVIESFVVDVPDGNTKDETCYFVEALIKCNLKSLADV 198
             ++  N  S          G+  T+V+ES+ VD+P+GNT+++T  FV+ ++K NL+ L   
Sbjct:   131 NEFLNQDS----------GKVYTVVLESYTVDIPEGNTEEDTKMFVDTVVKLNLQKLGVA 180

Query:   199 SEHLAVQD 206
             +    + D
Sbjct:   181 ATSAPMHD 188

GO:0005634 "nucleus" evidence=ISM

GO:0005515 "protein binding" evidence=IPI

GO:0009738 "abscisic acid mediated signaling pathway" evidence=IGI;IDA

GO:0004872 "receptor activity" evidence=IDA

GO:0042803 "protein homodimerization activity" evidence=IDA

GO:0009062 "fatty acid catabolic process" evidence=RCA

TAIR|locus:2178585 PYL1 "PYR1-like 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 340 (124.7 bits), Expect = 6.9e-31, P = 6.9e-31
 Identities = 74/177 (41%), Positives = 110/177 (62%)

Query:    26 IKRHHKHDVHDHQCSSSLVKHIKAPVHLVWSLVRRFDQPQKYKPFVSRCIVQGD--LQIG 83
             I   H + + + +CSS L + I AP   VWS+VRRFD+PQ YK F+  C V  D  +++G
Sbjct:    44 IAEFHTYQLGNGRCSSLLAQRIHAPPETVWSVVRRFDRPQIYKHFIKSCNVSEDFEMRVG 103

Query:    84 SVREVNVKSGLPATTSTERLELLDDEEHIFGMRIVGGDHRLKIIWNFSNFISTSSSKLQN 143
               R+VNV SGLPA TS ERL+LLDD+  + G  I GG+HRL+      N+ S ++     
Sbjct:   104 CTRDVNVISGLPANTSRERLDLLDDDRRVTGFSITGGEHRLR------NYKSVTT----- 152

Query:   144 YSSIVTVHPEVIDGRPGTLVIESFVVDVPDGNTKDETCYFVEALIKCNLKSLADVSE 200
                +     E  + R  T+V+ES+VVDVP+GN++++T  F + +I+ NL+ LA ++E
Sbjct:   153 ---VHRFEKEEEEERIWTVVLESYVVDVPEGNSEEDTRLFADTVIRLNLQKLASITE 206

GO:0005634 "nucleus" evidence=ISM

GO:0005515 "protein binding" evidence=IPI

GO:0004872 "receptor activity" evidence=IDA

GO:0009738 "abscisic acid mediated signaling pathway" evidence=IGI;IDA

GO:0010427 "abscisic acid binding" evidence=IDA

GO:0080163 "regulation of protein serine/threonine phosphatase activity" evidence=IDA

GO:0042803 "protein homodimerization activity" evidence=IDA

GO:0006569 "tryptophan catabolic process" evidence=RCA

GO:0009684 "indoleacetic acid biosynthetic process" evidence=RCA

GO:0019761 "glucosinolate biosynthetic process" evidence=RCA

TAIR|locus:2153549 PYL5 "PYRABACTIN RESISTANCE 1-LIKE 5" [Arabidopsis thaliana (taxid:3702)]

 Score = 327 (120.2 bits), Expect = 1.6e-29, P = 1.6e-29
 Identities = 71/149 (47%), Positives = 93/149 (62%)

Query:    24 DYIKRHHKHDVHDHQCSSSLVKHIKAPVHLVWSLVRRFDQPQKYKPFVSRC-IVQGD-LQ 81
             +++  HH HDV   QC SS+V+ I AP   VW+LVRRFD P+ YK F+ +C IVQGD L 
Sbjct:    43 EHVAMHHTHDVGPDQCCSSVVQMIHAPPESVWALVRRFDNPKVYKNFIRQCRIVQGDGLH 102

Query:    82 IGSVREVNVKSGLPATTSTERLELLDDEEHIFGMRIVGGDHRLKIIWNFSNFISTSSSKL 141
             +G +REV V SGLPA +STERLE+LD+E H+    +VGGDHRLK      N+ S ++   
Sbjct:   103 VGDLREVMVVSGLPAVSSTERLEILDEERHVISFSVVGGDHRLK------NYRSVTTLHA 156

Query:   142 QNYSSIVTVHPEVIDGRPGTLVIE--SFV 168
              +    V V   ++D  PG    E  SFV
Sbjct:   157 SDDEGTVVVESYIVDVPPGNTEEETLSFV 185

GO:0005634 "nucleus" evidence=ISM;IDA

GO:0004872 "receptor activity" evidence=IDA

GO:0009738 "abscisic acid mediated signaling pathway" evidence=IDA

GO:0005515 "protein binding" evidence=IPI

GO:0005737 "cytoplasm" evidence=IDA

GO:0010427 "abscisic acid binding" evidence=IDA

TAIR|locus:2032738 PYL3 "AT1G73000" [Arabidopsis thaliana (taxid:3702)]

 Score = 320 (117.7 bits), Expect = 9.1e-29, P = 9.1e-29
 Identities = 71/203 (34%), Positives = 120/203 (59%)

Query:     9 TVNGSGSGGFGKIEEDY------IKRHHKHDVHDHQCSSSLVKHIKAPVHLVWSLVRRFD 62
             T   S S  +G  ++++      I+ HH      + C+S +   + AP H +W  VR F 
Sbjct:    14 TTTTSSSTPYGLTKDEFSTLDSIIRTHHTFPRSPNTCTSLIAHRVDAPAHAIWRFVRDFA 73

Query:    63 QPQKYKPFVSRCIVQ--G----DLQIGSVREVNVKSGLPATTSTERLELLDDEEHIFGMR 116
              P KYK F+  C ++  G    ++++G++REV+V SGLPA+TS E LE+LD+E+ I   R
Sbjct:    74 NPNKYKHFIKSCTIRVNGNGIKEIKVGTIREVSVVSGLPASTSVEILEVLDEEKRILSFR 133

Query:   117 IVGGDHRLKIIWNFSNFISTSSSKLQNYSSIVTVHPEVIDGRPGTLVIESFVVDVPDGNT 176
             ++GG+HRL      +N+ S +S      +  V +  +    R  ++V+ES++VD+P GNT
Sbjct:   134 VLGGEHRL------NNYRSVTS-----VNEFVVLEKDK-KKRVYSVVLESYIVDIPQGNT 181

Query:   177 KDETCYFVEALIKCNLKSLADVS 199
             +++T  FV+ ++K NL++LA +S
Sbjct:   182 EEDTRMFVDTVVKSNLQNLAVIS 204

GO:0008150 "biological_process" evidence=ND

GO:0005515 "protein binding" evidence=IPI

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q84MC7	PYL9_ARATH	No assigned EC number	0.7055	0.8364	0.9572	no	no
Q9FGM1	PYL8_ARATH	No assigned EC number	0.7287	0.7990	0.9095	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	214
cd07821	140	cd07821, PYR_PYL_RCAR_like, Pyrabactin resistance	2e-29
pfam10604	140	pfam10604, Polyketide_cyc2, Polyketide cyclase / d	2e-15
cd07816	148	cd07816, Bet_v1-like, Ligand-binding bet_v_1 domai	2e-06

>gnl|CDD|176863 cd07821, PYR_PYL_RCAR_like, Pyrabactin resistance 1 (PYR1), PYR1-like (PYL), regulatory component of abscisic acid receptors (RCARs), and related proteins

 Score =  106 bits (266), Expect = 2e-29
 Identities = 48/163 (29%), Positives = 69/163 (42%), Gaps = 24/163 (14%)

Query: 39  CSSSLVKHIKAPVHLVWSLVRRFDQPQKYKPFVSRC-IVQGDLQIGSVREVNVKSGLPAT 97
              ++   I AP   VW+L+  F    K+ P V+ C +  G   +G+VR V +K G    
Sbjct: 1   AKVTVSVTIDAPADKVWALLSDFGGLHKWHPAVASCELEGGGPGVGAVRTVTLKDG---G 57

Query: 98  TSTERLELLDDEEHIFGMRIVGGDHRLKIIWNFSNFISTSSSKLQNYSSIVTVHPEVIDG 157
           T  ERL  LDD E  +  RIV G   +K                 NY + + V PE   G
Sbjct: 58  TVRERLLALDDAERRYSYRIVEGPLPVK-----------------NYVATIRVTPE---G 97

Query: 158 RPGTLVIESFVVDVPDGNTKDETCYFVEALIKCNLKSLADVSE 200
             GT V  +   D P+G T +    F+  + +  L +L    E
Sbjct: 98  DGGTRVTWTAEFDPPEGLTDELARAFLTGVYRAGLAALKAALE 140

The PYR/PYL/RCAR-like family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. PYR/PYL/RCAR plant proteins are receptors involved in signal transduction. They bind abscisic acid (ABA) and mediate its signaling. ABA is a vital plant hormone, which regulates plant growth, development, and response to environmental stresses. Upon binding ABA, these plant proteins interact with a type 2C protein phosphatase (PP2C), such as ABI1 and ABI2, and inhibit their activity. When ABA is bound, a loop (designated the gate/CL2 loop) closes over the ligand binding pocket, resulting in the weakening of the inactive PYL dimer and facilitating type 2C protein phosphatase binding. In the ABA:PYL1:ABI1 complex, the gate blocks substrate access to the phosphatase active site. A conserved Trp from PP2C inserts into PYL to lock the receptor in a closed formation. This group also contains Methylobacterium extorquens AM1 MxaD. The mxaD gene is located within the mxaFJGIR(S)ACKLDEHB cluster which encodes proteins involved in methanol oxidation. MxaD may participate in the periplasmic electron transport chain for oxidation of methanol. Mutants lacking MxaD exhibit a reduced growth on methanol, and a lower rate of respiration with methanol. Length = 140

>gnl|CDD|220822 pfam10604, Polyketide_cyc2, Polyketide cyclase / dehydrase and lipid transport

 Score = 69.8 bits (171), Expect = 2e-15
 Identities = 38/165 (23%), Positives = 51/165 (30%), Gaps = 27/165 (16%)

Query: 38  QCSSSLVKHIKAPVHLVWSLVRRFDQPQKYKPFVSRCIVQGDLQIGSVREVNVKSGLPAT 97
               S+   I AP   VW+LV  F+   ++ P V R  ++G    G +  V         
Sbjct: 1   MAKVSVSITIAAPPEKVWALVSDFENWPRWHPGVLRVELEGG---GPLGVVGTLRAGGGR 57

Query: 98  TSTERLELLDDEEHIFGMRIVGGDHRLKIIWNFSNFISTSSSKLQNYSSIVTVHPEVIDG 157
           T  E L   D        RIV                      + NY    TV P     
Sbjct: 58  TVREELVEYDPAGRRLEYRIVEP------------------LGVTNYVGTWTVTPA---- 95

Query: 158 RPGTLV--IESFVVDVPDGNTKDETCYFVEALIKCNLKSLADVSE 200
             GT V     F    P G         V+  I+  L +L  + E
Sbjct: 96  GGGTRVTWTGEFDPPGPLGLNGPAAAKAVKGDIEAGLDNLKALLE 140

This family contains polyketide cylcases/dehydrases which are enzymes involved in polyketide synthesis. It also includes other proteins of the START superfamily. Length = 140

>gnl|CDD|176858 cd07816, Bet_v1-like, Ligand-binding bet_v_1 domain of major pollen allergen of white birch (Betula verrucosa), Bet v 1, and related proteins

 Score = 45.3 bits (108), Expect = 2e-06
 Identities = 12/60 (20%), Positives = 27/60 (45%)

Query: 75  IVQGDLQIGSVREVNVKSGLPATTSTERLELLDDEEHIFGMRIVGGDHRLKIIWNFSNFI 134
           +++GD   GS++ +    G       ER++ +D+E   +   ++ GD       ++   I
Sbjct: 40  LLEGDGGPGSIKLITFGPGGKVKYVKERIDAVDEENKTYKYTVIEGDVLKDGYKSYKVEI 99

This family includes the ligand binding domain of Bet v 1 (the major pollen allergen of white birch, Betula verrucosa) and related proteins. In addition to birch Bet v 1, this family includes other plant intracellular pathogenesis-related class 10 (PR-10) proteins, norcoclaurine synthases (NCSs), cytokinin binding proteins (CSBPs), major latex proteins (MLPs), and ripening-related proteins. It belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. Members of this family binds a diverse range of ligands. Bet v 1 can bind brassinosteroids, cytokinins, flavonoids and fatty acids. Hyp-1, a PR-10 from Hypericum perforatum/St. John's wort, catalyzes the condensation of two molecules of emodin to the bioactive naphthodianthrone hypericin. NCSs catalyze the condensation of dopamine and 4-hydroxyphenylacetaldehyde to (S)-norcoclaurine, the first committed step in the biosynthesis of benzylisoquinoline alkaloids such as morphine. The role of MLPs is unclear; however, they are associated with fruit and flower development and in pathogen defense responses. A number of PR-10 proteins in this subgroup, including Bet v 1, have in vitro RNase activity, the biological significance of which is unclear. Bet v 1 family proteins have a conserved glycine-rich P (phosphate-binding)-loop proximal to the entrance of the ligand-binding pocket. However, its conformation differs from that of the canonical P-loop structure found in nucleotide-binding proteins. Several PR-10 members including Bet v1 are allergenic. Cross-reactivity of Bet v 1 with homologs from plant foods results in birch-fruit syndrome. Length = 148

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	214
cd07816	148	Bet_v1-like Ligand-binding bet_v_1 domain of major	99.92
PF00407	151	Bet_v_1: Pathogenesis-related protein Bet v I fami	99.77
PF10604	139	Polyketide_cyc2: Polyketide cyclase / dehydrase an	99.76
cd07821	140	PYR_PYL_RCAR_like Pyrabactin resistance 1 (PYR1),	99.75
cd08866	144	SRPBCC_11 Ligand-binding SRPBCC domain of an uncha	99.61
cd08862	138	SRPBCC_Smu440-like Ligand-binding SRPBCC domain of	99.61
cd08865	140	SRPBCC_10 Ligand-binding SRPBCC domain of an uncha	99.6
cd08861	142	OtcD1_ARO-CYC_like N-terminal and C-terminal aroma	99.58
cd07822	141	SRPBCC_4 Ligand-binding SRPBCC domain of an unchar	99.51
cd07818	150	SRPBCC_1 Ligand-binding SRPBCC domain of an unchar	99.51
cd07819	140	SRPBCC_2 Ligand-binding SRPBCC domain of an unchar	99.44
cd07817	139	SRPBCC_8 Ligand-binding SRPBCC domain of an unchar	99.44
cd07813	138	COQ10p_like Coenzyme Q-binding protein COQ10p and	99.39
cd07814	139	SRPBCC_CalC_Aha1-like Putative hydrophobic ligand-	99.37
cd08860	146	TcmN_ARO-CYC_like N-terminal aromatase/cyclase dom	99.37
cd07825	144	SRPBCC_7 Ligand-binding SRPBCC domain of an unchar	99.3
cd07824	146	SRPBCC_6 Ligand-binding SRPBCC domain of an unchar	99.3
cd05018	144	CoxG Carbon monoxide dehydrogenase subunit G (CoxG	99.28
cd07812	141	SRPBCC START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC (SR	99.2
cd07823	146	SRPBCC_5 Ligand-binding SRPBCC domain of an unchar	99.1
cd07820	137	SRPBCC_3 Ligand-binding SRPBCC domain of an unchar	99.08
PF03364	130	Polyketide_cyc: Polyketide cyclase / dehydrase and	98.97
PRK10724	158	hypothetical protein; Provisional	98.94
cd08893	136	SRPBCC_CalC_Aha1-like_GntR-HTH Putative hydrophobi	98.85
cd08898	145	SRPBCC_CalC_Aha1-like_5 Putative hydrophobic ligan	98.82
cd08899	157	SRPBCC_CalC_Aha1-like_6 Putative hydrophobic ligan	98.81
cd08894	139	SRPBCC_CalC_Aha1-like_1 Putative hydrophobic ligan	98.67
cd08900	143	SRPBCC_CalC_Aha1-like_7 Putative hydrophobic ligan	98.53
cd08891	149	SRPBCC_CalC Ligand-binding SRPBCC domain of Microm	98.51
COG3427	146	Carbon monoxide dehydrogenase subunit G, CoxG [Ene	98.5
cd08897	133	SRPBCC_CalC_Aha1-like_4 Putative hydrophobic ligan	98.48
cd07826	142	SRPBCC_CalC_Aha1-like_9 Putative hydrophobic ligan	98.47
cd08896	146	SRPBCC_CalC_Aha1-like_3 Putative hydrophobic ligan	98.47
PF06240	140	COXG: Carbon monoxide dehydrogenase subunit G (Cox	98.39
cd08895	146	SRPBCC_CalC_Aha1-like_2 Putative hydrophobic ligan	98.36
cd08901	136	SRPBCC_CalC_Aha1-like_8 Putative hydrophobic ligan	98.34
PF08327	124	AHSA1: Activator of Hsp90 ATPase homolog 1-like pr	98.31
cd08876	195	START_1 Uncharacterized subgroup of the steroidoge	98.27
COG5637	217	Predicted integral membrane protein [Function unkn	98.27
cd08892	126	SRPBCC_Aha1 Putative hydrophobic ligand-binding SR	98.09
COG2867	146	Oligoketide cyclase/lipid transport protein [Lipid	98.04
COG3832	149	Uncharacterized conserved protein [Function unknow	98.03
PTZ00220	132	Activator of HSP-90 ATPase; Provisional	97.24
cd08905	209	START_STARD1-like Cholesterol-binding START domain	96.11
PF08982	149	DUF1857: Domain of unknown function (DUF1857); Int	95.86
cd08874	205	START_STARD9-like C-terminal START domain of mamma	95.82
cd08877	215	START_2 Uncharacterized subgroup of the steroidoge	95.72
cd08906	209	START_STARD3-like Cholesterol-binding START domain	95.57
COG4276	153	Uncharacterized conserved protein [Function unknow	95.54
PF10698	159	DUF2505: Protein of unknown function (DUF2505); In	95.16
cd08903	208	START_STARD5-like Lipid-binding START domain of ma	94.1
cd08913	240	START_STARD14-like Lipid-binding START domain of m	94.0
KOG3177	227	consensus Oligoketide cyclase/lipid transport prot	93.63
cd08873	235	START_STARD14_15-like Lipid-binding START domain o	93.45
cd08871	222	START_STARD10-like Lipid-binding START domain of m	92.89
cd08869	197	START_RhoGAP C-terminal lipid-binding START domain	92.49
cd08868	208	START_STARD1_3_like Cholesterol-binding START doma	90.24
cd08863	141	SRPBCC_DUF1857 DUF1857, an uncharacterized ligand-	90.16
smart00234	206	START in StAR and phosphatidylcholine transfer pro	89.48
cd00177	193	START Lipid-binding START domain of mammalian STAR	89.12
cd08911	207	START_STARD7-like Lipid-binding START domain of ma	88.17
cd08870	209	START_STARD2_7-like Lipid-binding START domain of	87.25
cd08908	204	START_STARD12-like C-terminal lipid-binding START	84.82
cd08914	236	START_STARD15-like Lipid-binding START domain of m	81.96

>cd07816 Bet_v1-like Ligand-binding bet_v_1 domain of major pollen allergen of white birch (Betula verrucosa), Bet v 1, and related proteins

Probab=99.92  E-value=1.6e-23  Score=169.13  Aligned_cols=117  Identities=18%  Similarity=0.272  Sum_probs=101.1

Q ss_pred             ceEEEEEeeeecCCHHHHHHHHhcCCC-C-CccCccceEEEE-ecCCCCCeEEEEEeeCCCCcceEEEEEEEEeCCCcEE
Q 028067           37 HQCSSSLVKHIKAPVHLVWSLVRRFDQ-P-QKYKPFVSRCIV-QGDLQIGSVREVNVKSGLPATTSTERLELLDDEEHIF  113 (214)
Q Consensus        37 ~~ve~sI~~~I~APae~VW~vi~Df~~-l-~~W~P~V~s~~v-eG~g~VGsvR~l~~~~G~p~~~v~ErL~~~D~~~~~~  113 (214)
                      .+++.++  +|+||||+||++++||.+ + +.|+|.|++|++ +|++++||+|.+++.+|.+..+++|||+++|+++|++
T Consensus         1 ~~~~~e~--~i~a~ad~vW~~~~~~~~~~~~~~~p~v~~~~~~eG~~~~GsvR~~~~~~~~~~~~~kE~l~~~D~~~~~~   78 (148)
T cd07816           1 GTLEHEV--ELKVPAEKLWKAFVLDSHLLPPKLPPVIKSVELLEGDGGPGSIKLITFGPGGKVKYVKERIDAVDEENKTY   78 (148)
T ss_pred             CcEEEEE--EecCCHHHHHHHHhcChhhccccccccccEEEEEecCCCCceEEEEEEcCCCcceEEEEEEEEEcccccEE
Confidence            3678888  999999999999999994 4 689999999985 7888899999999987755568999999999999999


Q ss_pred             EEEEEcCcccceeeeccccccccCCCcceeeEEEEEEEeecCCCcceEEEEEEEEe
Q 028067          114 GMRIVGGDHRLKIIWNFSNFISTSSSKLQNYSSIVTVHPEVIDGRPGTLVIESFVV  169 (214)
Q Consensus       114 ~Y~iv~g~~~~~~~~~~~~~~~~~~~p~~~y~ati~v~p~~~~gs~~t~~~~s~~~  169 (214)
                      +|++++|+.+.              +|+++|.++++|.|.++++|.++|+..|...
T Consensus        79 ~y~vveg~~~~--------------~~~~~y~~t~~v~~~~~~~t~v~Wt~~ye~~  120 (148)
T cd07816          79 KYTVIEGDVLK--------------DGYKSYKVEIKFVPKGDGGCVVKWTIEYEKK  120 (148)
T ss_pred             EEEEEeccccc--------------CceEEEEEEEEEEECCCCCEEEEEEEEEEEC
Confidence            99999986532              3689999999999997788888888877654

This family includes the ligand binding domain of Bet v 1 (the major pollen allergen of white birch, Betula verrucosa) and related proteins. In addition to birch Bet v 1, this family includes other plant intracellular pathogenesis-related class 10 (PR-10) proteins, norcoclaurine synthases (NCSs), cytokinin binding proteins (CSBPs), major latex proteins (MLPs), and ripening-related proteins. It belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. Members of this family binds a diverse range of ligands. Bet v 1 can bind brassinosteroids, cytokinins, flavonoids and fatty acids. Hyp-1, a PR-10 from Hypericum perforatum/St. John's wort, catalyzes the condensation of two molecules of emodin to the bioactive naphthodianth

>PF00407 Bet_v_1: Pathogenesis-related protein Bet v I family; InterPro: IPR000916 Allergies are hypersensitivity reactions of the immune system to specific substances called allergens (such as pollen, stings, drugs, or food) that, in most people, result in no symptoms

Probab=99.77  E-value=2.8e-17  Score=134.16  Aligned_cols=116  Identities=19%  Similarity=0.270  Sum_probs=97.1

Q ss_pred             ceEEEEEeeeecCCHHHHHHHHhcCCC-CCccCc-cceEEEE-ecCCCCC-eEEEEEeeCCCCcceEEEEEEEEeCCCcE
Q 028067           37 HQCSSSLVKHIKAPVHLVWSLVRRFDQ-PQKYKP-FVSRCIV-QGDLQIG-SVREVNVKSGLPATTSTERLELLDDEEHI  112 (214)
Q Consensus        37 ~~ve~sI~~~I~APae~VW~vi~Df~~-l~~W~P-~V~s~~v-eG~g~VG-svR~l~~~~G~p~~~v~ErL~~~D~~~~~  112 (214)
                      .+++.++  ++++||+++|+++..... +++-.| .|+++++ +|++++| ++|.+++..|.|...++||++.+|+++++
T Consensus         4 ~~~~~E~--~~~~~a~k~~ka~~~~~~llpki~P~~i~sve~~eGdgg~gGSIk~~~f~~~~~~~~~Kekve~~D~~~~~   81 (151)
T PF00407_consen    4 GKLEVEV--EVKVSADKLWKAFKSSPHLLPKILPHVIKSVEVVEGDGGPGGSIKKWTFGPGGPFKYVKEKVEAIDEENKT   81 (151)
T ss_dssp             EEEEEEE--EESS-HHHHHHHHTTHHHHHHHHSTTTEEEEEEEESSSSTTT-EEEEEEETTSSEEEEEEEEEEEETTTTE
T ss_pred             EEEEEEE--EecCCHHHHHHHHhcCccchhhhChhhceeEEEEccCCCCCCeEEEEEecCCCCcceeEEEEEeecCCCcE
Confidence            4678888  999999999999997444 477777 5688875 8998777 99999999777777899999999999999


Q ss_pred             EEEEEEcCcccceeeeccccccccCCCcceeeEEEEEEEeecCCCcceEEEEEEEEe
Q 028067          113 FGMRIVGGDHRLKIIWNFSNFISTSSSKLQNYSSIVTVHPEVIDGRPGTLVIESFVV  169 (214)
Q Consensus       113 ~~Y~iv~g~~~~~~~~~~~~~~~~~~~p~~~y~ati~v~p~~~~gs~~t~~~~s~~~  169 (214)
                      ++|+++||+...               -+..|.+++++.|.++++|.++|++.|+..
T Consensus        82 ~~y~viEGd~l~---------------~~~~~~~~~~~~~~~~g~~v~k~t~~Ye~~  123 (151)
T PF00407_consen   82 ITYTVIEGDVLG---------------DYKSFKSTIQKIPKGDGGCVVKWTIEYEKK  123 (151)
T ss_dssp             EEEEEEEETTGT---------------TTEEEEEEEEEEEETTSCEEEEEEEEEEES
T ss_pred             EEEEEEeccccc---------------cEEEEEEEEEecCCCCCceEEEEEEEEEec
Confidence            999999997533               358999999999998888999999988764

A nomenclature system has been established for antigens (allergens) that cause IgE-mediated atopic allergies in humans [WHO/IUIS Allergen Nomenclature Subcommittee King T.P., Hoffmann D., Loewenstein H., Marsh D.G., Platts-Mills T.A.E., Thomas W. Bull. World Health Organ. 72:797-806(1994)]. This nomenclature system is defined by a designation that is composed of the first three letters of the genus; a space; the first letter of the species name; a space and an arabic number. In the event that two species names have identical designations, they are discriminated from one another by adding one or more letters (as necessary) to each species designation. The allergens in this family include allergens with the following designations: Aln g 1, Api g 1, Bet v 1, Car b 1, Cor a 1, Dau c 1, Mal d 1 and Pru a 1. Trees within the order Fagales possess particularly potent allergens, e.g. Bet v1, the major White Birch (Betula verrucosa) pollen antigen. Bet v1 is the main cause of type I allergies observed in early spring. Type I, or immunoglobulin E-mediated (IgE-mediated) allergies affect 1 in 5 people in Europe and North America. Commonly-observed symptoms are hay fever, dermatitis, asthma and, in severe cases, anaphylactic shock. First contact with these allergens results in sensitisation; subsequent contact produces a cross-linking reaction of IgE on mast cells and concomitant release of histamine. The inevitable symptoms of an allergic reaction ensue. Recent NMR analysis [] has confirmed earlier predictions of the protein structure and site of the major T-cell epitope []. The Bet v1 protein comprises 6 anti-parallel beta-strands and 3 alpha-helices. Four of the strands dominate the global fold, and 2 of the helices form a C-terminal amphipathic helical motif. This motif is believed to be the T-cell epitope. Other proteins belonging to this family include the major pollen allergens: Aln g I from Alnus glutinosa (Alder); Api G I from Apium graveolens (Celery); Car b I from Carpinus betulus (European hornbeam); Cor a I from Corylus avellana (European hazel); Mal d I from Malus domestica (Apple). The motif is also found in: the wound-induced protein AoPR1 from Asparagus officinalis (Garden asparagus); pathogenesis-related proteins from Phaseolus vulgaris (Kidney bean) and Petroselinum crispum (Parsley) (PR1-1 and PR1-3); the disease resistance response proteins, STH-2 and STH-21, from Solanum tuberosum (Potato) and pI49, pI176 and DRRG49-C from Pisum sativum (Garden pea); the P. sativum abscisic acid-responsive proteins ABR17 and ABR18; and the stress-induced protein SAM22 from Glycine max (Soybean). ; GO: 0006952 defense response, 0009607 response to biotic stimulus; PDB: 1IFV_A 4A8V_A 4A8U_A 2K7H_A 2QIM_A 3E85_A 1H2O_A 1E09_A 1QMR_A 1FSK_D ....

>PF10604 Polyketide_cyc2: Polyketide cyclase / dehydrase and lipid transport; InterPro: IPR019587 This family contains polyketide cylcases/dehydrases which are enzymes involved in polyketide synthesis

Probab=99.76  E-value=2.7e-16  Score=120.93  Aligned_cols=137  Identities=23%  Similarity=0.234  Sum_probs=108.7

Q ss_pred             eEEEEEeeeecCCHHHHHHHHhcCCCCCccCccceEEEEecCCCCCeEEEEEeeCCCCcceEEEEEEEEeCCCcEEEEEE
Q 028067           38 QCSSSLVKHIKAPVHLVWSLVRRFDQPQKYKPFVSRCIVQGDLQIGSVREVNVKSGLPATTSTERLELLDDEEHIFGMRI  117 (214)
Q Consensus        38 ~ve~sI~~~I~APae~VW~vi~Df~~l~~W~P~V~s~~veG~g~VGsvR~l~~~~G~p~~~v~ErL~~~D~~~~~~~Y~i  117 (214)
                      +++.++  +|+|||++||++++|+.++++|.|.+.++++.+.+++|..+.++. .|.  ..++++++++||+++.+.|++
T Consensus         3 ~~~~~~--~v~a~~e~V~~~l~d~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~-~g~--~~~~~~i~~~~~~~~~~~~~~   77 (139)
T PF10604_consen    3 KVEVSI--EVPAPPEAVWDLLSDPENWPRWWPGVKSVELLSGGGPGTERTVRV-AGR--GTVREEITEYDPEPRRITWRF   77 (139)
T ss_dssp             EEEEEE--EESS-HHHHHHHHTTTTGGGGTSTTEEEEEEEEECSTEEEEEEEE-CSC--SEEEEEEEEEETTTTEEEEEE
T ss_pred             EEEEEE--EECCCHHHHHHHHhChhhhhhhhhceEEEEEccccccceeEEEEe-ccc--cceeEEEEEecCCCcEEEEEE
Confidence            567778  999999999999999999999999999998754333566677775 442  379999999998789999999


Q ss_pred             EcCcccceeeeccccccccCCCcceeeEEEEEEEeecCCCcceEEEEEEEEeeCCCCCCHHHHHHHHHHHHHHHHHHHHH
Q 028067          118 VGGDHRLKIIWNFSNFISTSSSKLQNYSSIVTVHPEVIDGRPGTLVIESFVVDVPDGNTKDETCYFVEALIKCNLKSLAD  197 (214)
Q Consensus       118 v~g~~~~~~~~~~~~~~~~~~~p~~~y~ati~v~p~~~~gs~~t~~~~s~~~~~p~~~~~~~~~~~v~~~~~~gL~~L~~  197 (214)
                      .  .                 .|+.++..++++.|.+ +||.++|...+.. .++.......+..++.+.++..|++|++
T Consensus        78 ~--~-----------------~~~~~~~~~~~~~~~~-~gt~v~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~~l~~  136 (139)
T PF10604_consen   78 V--P-----------------SGFTNGTGRWRFEPVG-DGTRVTWTVEFEP-GLPGWLAGPLLRPAVKRIVREALENLKR  136 (139)
T ss_dssp             E--S-----------------SSSCEEEEEEEEEEET-TTEEEEEEEEEEE-SCTTSCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             E--e-----------------cceeEEEEEEEEEEcC-CCEEEEEEEEEEE-eccchhhHHHHHHHHHHHHHHHHHHHhc
Confidence            6  1                 2557999999999998 6687777776554 2233334566888999999999999999


Q ss_pred             HHh
Q 028067          198 VSE  200 (214)
Q Consensus       198 ~le  200 (214)
                      .+|
T Consensus       137 ~~E  139 (139)
T PF10604_consen  137 AAE  139 (139)
T ss_dssp             HHH
T ss_pred             ccC
Confidence            987

It also includes other proteins of the START superfamily []. ; PDB: 3QRZ_C 3CNW_A 3P9V_A 3OQU_B 3NEF_B 3JRQ_B 3KAY_A 3JRS_A 3KDJ_A 3NMN_C ....

>cd07821 PYR_PYL_RCAR_like Pyrabactin resistance 1 (PYR1), PYR1-like (PYL), regulatory component of abscisic acid receptors (RCARs), and related proteins

Probab=99.75  E-value=1.9e-16  Score=121.65  Aligned_cols=138  Identities=33%  Similarity=0.520  Sum_probs=113.0

Q ss_pred             eEEEEEeeeecCCHHHHHHHHhcCCCCCccCccceEEEEec-CCCCCeEEEEEeeCCCCcceEEEEEEEEeCCCcEEEEE
Q 028067           38 QCSSSLVKHIKAPVHLVWSLVRRFDQPQKYKPFVSRCIVQG-DLQIGSVREVNVKSGLPATTSTERLELLDDEEHIFGMR  116 (214)
Q Consensus        38 ~ve~sI~~~I~APae~VW~vi~Df~~l~~W~P~V~s~~veG-~g~VGsvR~l~~~~G~p~~~v~ErL~~~D~~~~~~~Y~  116 (214)
                      +++.++  +|+||+++||+++.|+.+++.|.|.+.++++.+ ..++|+.+.+.+..|.   .++++++++|+.++.+.|+
T Consensus         2 ~i~~~~--~i~a~~~~V~~~l~d~~~~~~w~~~~~~~~~~~~~~~~g~~~~~~~~~g~---~~~~~i~~~~~~~~~i~~~   76 (140)
T cd07821           2 KVTVSV--TIDAPADKVWALLSDFGGLHKWHPAVASCELEGGGPGVGAVRTVTLKDGG---TVRERLLALDDAERRYSYR   76 (140)
T ss_pred             cEEEEE--EECCCHHHHHHHHhCcCchhhhccCcceEEeecCCCCCCeEEEEEeCCCC---EEEEEehhcCccCCEEEEE
Confidence            567788  999999999999999999999999999998753 3358999998887663   6899999999976889999


Q ss_pred             EEcCcccceeeeccccccccCCCcceeeEEEEEEEeecCCCcceEEEEEEEEeeCCCCCCHHHHHHHHHHHHHHHHHHHH
Q 028067          117 IVGGDHRLKIIWNFSNFISTSSSKLQNYSSIVTVHPEVIDGRPGTLVIESFVVDVPDGNTKDETCYFVEALIKCNLKSLA  196 (214)
Q Consensus       117 iv~g~~~~~~~~~~~~~~~~~~~p~~~y~ati~v~p~~~~gs~~t~~~~s~~~~~p~~~~~~~~~~~v~~~~~~gL~~L~  196 (214)
                      +.+++.                 |+.++.+++++.|.++++|.++++..+.   ++.+.....+..++...+..+|++|+
T Consensus        77 ~~~~~~-----------------~~~~~~~~~~~~~~~~~~t~v~~~~~~~---~~~~~~~~~~~~~~~~~~~~~l~~L~  136 (140)
T cd07821          77 IVEGPL-----------------PVKNYVATIRVTPEGDGGTRVTWTAEFD---PPEGLTDELARAFLTGVYRAGLAALK  136 (140)
T ss_pred             ecCCCC-----------------CcccceEEEEEEECCCCccEEEEEEEEe---cCCCcchHHHHHHHHHHHHHHHHHHH
Confidence            988633                 4578999999999886688777776643   33324456788899999999999999


Q ss_pred             HHHh
Q 028067          197 DVSE  200 (214)
Q Consensus       197 ~~le  200 (214)
                      +.++
T Consensus       137 ~~~~  140 (140)
T cd07821         137 AALE  140 (140)
T ss_pred             HhhC
Confidence            9875

The PYR/PYL/RCAR-like family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. PYR/PYL/RCAR plant proteins are receptors involved in signal transduction. They bind abscisic acid (ABA) and mediate its signaling. ABA is a vital plant hormone, which regulates plant growth, development, and response to environmental stresses. Upon binding ABA, these plant proteins interact with a type 2C protein phosphatase (PP2C), such as ABI1 and ABI2, and inhibit their activity. When ABA is bound, a loop (designated the gate/CL2 loop) closes over the ligand binding pocket, resulting in the weakening of the inactive PYL dimer and facilitating type 2C protein phosphatase binding. In the ABA:PYL1:ABI1 complex, the gate

>cd08866 SRPBCC_11 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins

Probab=99.61  E-value=4e-14  Score=110.91  Aligned_cols=137  Identities=15%  Similarity=0.190  Sum_probs=98.7

Q ss_pred             EEEEEeeeecCCHHHHHHHHhcCCCCCccCccceEEEE-ecCCCCCeEEEEEeeCC-----CCcceEEEEEEEEeCCCcE
Q 028067           39 CSSSLVKHIKAPVHLVWSLVRRFDQPQKYKPFVSRCIV-QGDLQIGSVREVNVKSG-----LPATTSTERLELLDDEEHI  112 (214)
Q Consensus        39 ve~sI~~~I~APae~VW~vi~Df~~l~~W~P~V~s~~v-eG~g~VGsvR~l~~~~G-----~p~~~v~ErL~~~D~~~~~  112 (214)
                      |+.++  .|+||+++||+++.|++++++|.|.|.+|++ ++.+ .+.........+     .+ ..++.++.+.++.++.
T Consensus         1 ~~~~~--~i~a~~~~Vw~~l~D~~~~~~w~p~v~~~~~l~~~~-~~~~~~~~~~~~~~~~~~~-~~v~~~~~~~~~~~~~   76 (144)
T cd08866           1 VVARV--RVPAPPETVWAVLTDYDNLAEFIPNLAESRLLERNG-NRVVLEQTGKQGILFFKFE-ARVVLELREREEFPRE   76 (144)
T ss_pred             CeEEE--EECCCHHHHHHHHhChhhHHhhCcCceEEEEEEcCC-CEEEEEEeeeEEEEeeeee-EEEEEEEEEecCCCce
Confidence            35678  9999999999999999999999999999985 4422 222111110011     11 2355667777765789


Q ss_pred             EEEEEEcCcccceeeeccccccccCCCcceeeEEEEEEEeecC-CCcceEEEEEEEEeeCCCCCCHHHHHHHHHHHHHHH
Q 028067          113 FGMRIVGGDHRLKIIWNFSNFISTSSSKLQNYSSIVTVHPEVI-DGRPGTLVIESFVVDVPDGNTKDETCYFVEALIKCN  191 (214)
Q Consensus       113 ~~Y~iv~g~~~~~~~~~~~~~~~~~~~p~~~y~ati~v~p~~~-~gs~~t~~~~s~~~~~p~~~~~~~~~~~v~~~~~~g  191 (214)
                      ++|++++|                   |+..+.++.++.|.++ ++|.++|.++.   ++..+.....+..++...+...
T Consensus        77 i~~~~~~g-------------------~~~~~~g~w~~~~~~~~~~t~v~~~~~~---~~~~~~p~~l~~~~~~~~~~~~  134 (144)
T cd08866          77 LDFEMVEG-------------------DFKRFEGSWRLEPLADGGGTLLTYEVEV---KPDFFAPVFLVEFVLRQDLPTN  134 (144)
T ss_pred             EEEEEcCC-------------------chhceEEEEEEEECCCCCeEEEEEEEEE---EeCCCCCHHHHHHHHHHHHHHH
Confidence            99999876                   3478999999999986 56766666554   3333444467888899999999


Q ss_pred             HHHHHHHHhh
Q 028067          192 LKSLADVSEH  201 (214)
Q Consensus       192 L~~L~~~le~  201 (214)
                      |++|++.+|+
T Consensus       135 l~~lr~~ae~  144 (144)
T cd08866         135 LLAIRAEAES  144 (144)
T ss_pred             HHHHHHHHhC
Confidence            9999999874

Uncharacterized group of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.

>cd08862 SRPBCC_Smu440-like Ligand-binding SRPBCC domain of Streptococcus mutans Smu

Probab=99.61  E-value=7.6e-14  Score=107.78  Aligned_cols=136  Identities=16%  Similarity=0.061  Sum_probs=101.1

Q ss_pred             eEEEEEeeeecCCHHHHHHHHhcCCCCCccCccceEEEEecCC-CCCeEEEEEeeCCCCcceEEEEEEEEeCCCcEEEEE
Q 028067           38 QCSSSLVKHIKAPVHLVWSLVRRFDQPQKYKPFVSRCIVQGDL-QIGSVREVNVKSGLPATTSTERLELLDDEEHIFGMR  116 (214)
Q Consensus        38 ~ve~sI~~~I~APae~VW~vi~Df~~l~~W~P~V~s~~veG~g-~VGsvR~l~~~~G~p~~~v~ErL~~~D~~~~~~~Y~  116 (214)
                      +++.++  .|+||+++||++++|+.+++.|.|.+.++++.+++ ++|+...++...+   ..+..++.++++. +.+.|+
T Consensus         2 ~~~~~~--~i~Ap~~~Vw~~~~d~~~~~~w~~~~~~~~~~~~~~~~G~~~~~~~~~~---~~~~~~i~~~~p~-~~~~~~   75 (138)
T cd08862           2 KFEATI--VIDAPPERVWAVLTDVENWPAWTPSVETVRLEGPPPAVGSSFKMKPPGL---VRSTFTVTELRPG-HSFTWT   75 (138)
T ss_pred             EEEEEE--EEcCCHHHHHHHHHhhhhcccccCcceEEEEecCCCCCCcEEEEecCCC---CceEEEEEEecCC-CEEEEE
Confidence            577888  99999999999999999999999999999876544 6888777765443   3578889999984 668887


Q ss_pred             EEcCcccceeeeccccccccCCCcceeeEEEEEEEeecCCCcceEEEEEEEEeeCCCCCCHHHHHHHHHHHHHHHHHHHH
Q 028067          117 IVGGDHRLKIIWNFSNFISTSSSKLQNYSSIVTVHPEVIDGRPGTLVIESFVVDVPDGNTKDETCYFVEALIKCNLKSLA  196 (214)
Q Consensus       117 iv~g~~~~~~~~~~~~~~~~~~~p~~~y~ati~v~p~~~~gs~~t~~~~s~~~~~p~~~~~~~~~~~v~~~~~~gL~~L~  196 (214)
                      ....                    ...+..++.+++.++++|..++...+.  .++.......+.+.++..+...|++|+
T Consensus        76 ~~~~--------------------~~~~~~~~~~~~~~~~~t~l~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~l~~lk  133 (138)
T cd08862          76 GPAP--------------------GISAVHRHEFEAKPDGGVRVTTSESLS--GPLAFLFGLFVGKKLRALLPEWLEGLK  133 (138)
T ss_pred             ecCC--------------------CEEEEEEEEEEEcCCCcEEEEEEEEee--cchHHHHHHHHHHHHHhhHHHHHHHHH
Confidence            6431                    146678999998765676555444322  122222334677888999999999999


Q ss_pred             HHHhh
Q 028067          197 DVSEH  201 (214)
Q Consensus       197 ~~le~  201 (214)
                      +.+|.
T Consensus       134 ~~~E~  138 (138)
T cd08862         134 AAAEQ  138 (138)
T ss_pred             HHhcC
Confidence            98873

440 and related proteins. This family includes the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain of Streptococcus mutans Smu.440 and related proteins. This domain belongs to the SRPBCC domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. Streptococcus mutans is a dental pathogen, and the leading cause of dental caries. In this pathogen, the gene encoding Smu.440 is in the same operon as the gene encoding SMU.441, a member of the MarR protein family of transcriptional regulators involved in multiple antibiotic resistance. It has been suggested that SMU.440 is involved in polyketide-like antibiotic resistance.

>cd08865 SRPBCC_10 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins

Probab=99.60  E-value=7.2e-14  Score=107.03  Aligned_cols=136  Identities=17%  Similarity=0.128  Sum_probs=101.2

Q ss_pred             EEEEeeeecCCHHHHHHHHhcCCCCCccCccceEEEEe--cCCCCCeEEEEEee-CCCCcceEEEEEEEEeCCCcEEEEE
Q 028067           40 SSSLVKHIKAPVHLVWSLVRRFDQPQKYKPFVSRCIVQ--GDLQIGSVREVNVK-SGLPATTSTERLELLDDEEHIFGMR  116 (214)
Q Consensus        40 e~sI~~~I~APae~VW~vi~Df~~l~~W~P~V~s~~ve--G~g~VGsvR~l~~~-~G~p~~~v~ErL~~~D~~~~~~~Y~  116 (214)
                      +.++  .|+||+++||++++||.+++.|.|.+.+++..  ++.++|+...+... .|.+ ..++++++++|+ ++.+.|.
T Consensus         2 ~~~~--~i~ap~~~Vw~~l~d~~~~~~w~~~~~~~~~~~~~~~~~g~~~~~~~~~~g~~-~~~~~~v~~~~p-~~~~~~~   77 (140)
T cd08865           2 EESI--VIERPVEEVFAYLADFENAPEWDPGVVEVEKITDGPVGVGTRYHQVRKFLGRR-IELTYEITEYEP-GRRVVFR   77 (140)
T ss_pred             ceEE--EEcCCHHHHHHHHHCccchhhhccCceEEEEcCCCCCcCccEEEEEEEecCce-EEEEEEEEEecC-CcEEEEE
Confidence            4567  89999999999999999999999999888753  34568888877654 3332 357899999997 5888998


Q ss_pred             EEcCcccceeeeccccccccCCCcceeeEEEEEEEeecCCCcceEEEEEEEEeeCCCCCCHHHHHHHHHHHHHHHHHHHH
Q 028067          117 IVGGDHRLKIIWNFSNFISTSSSKLQNYSSIVTVHPEVIDGRPGTLVIESFVVDVPDGNTKDETCYFVEALIKCNLKSLA  196 (214)
Q Consensus       117 iv~g~~~~~~~~~~~~~~~~~~~p~~~y~ati~v~p~~~~gs~~t~~~~s~~~~~p~~~~~~~~~~~v~~~~~~gL~~L~  196 (214)
                      ..++                   + -.+..++++.|.+ ++|.++|...+.. ..+.......+...+...+...|++|+
T Consensus        78 ~~~~-------------------~-~~~~~~~~~~~~~-~~t~v~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~~lk  135 (140)
T cd08865          78 GSSG-------------------P-FPYEDTYTFEPVG-GGTRVRYTAELEP-GGFARLLDPLMAPAFRRRARAALENLK  135 (140)
T ss_pred             ecCC-------------------C-cceEEEEEEEEcC-CceEEEEEEEEcc-chhHHHHHHHHHHHHhhhhHHHHHHHH
Confidence            7653                   1 2478899999986 5787777765443 222222334566777888889999999


Q ss_pred             HHHhh
Q 028067          197 DVSEH  201 (214)
Q Consensus       197 ~~le~  201 (214)
                      +.+|.
T Consensus       136 ~~~e~  140 (140)
T cd08865         136 ALLEA  140 (140)
T ss_pred             HHhhC
Confidence            98874

Uncharacterized group of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.

>cd08861 OtcD1_ARO-CYC_like N-terminal and C-terminal aromatase/cyclase domains of Streptomyces rimosus OtcD1 and related domains

Probab=99.58  E-value=1.3e-13  Score=107.88  Aligned_cols=139  Identities=15%  Similarity=0.078  Sum_probs=102.1

Q ss_pred             EEEEEeeeecCCHHHHHHHHhcCCCCCccCccceEEE-EecCCCCC-eEEEEEee-CCCCcceEEEEEEEEeCCCcEEEE
Q 028067           39 CSSSLVKHIKAPVHLVWSLVRRFDQPQKYKPFVSRCI-VQGDLQIG-SVREVNVK-SGLPATTSTERLELLDDEEHIFGM  115 (214)
Q Consensus        39 ve~sI~~~I~APae~VW~vi~Df~~l~~W~P~V~s~~-veG~g~VG-svR~l~~~-~G~p~~~v~ErL~~~D~~~~~~~Y  115 (214)
                      +++++  +|+||+++||++++||.+++.|+|. ..+. +++.+ .+ .++.+... .|.  ..-.+....+|++.+.+.|
T Consensus         1 ~~~s~--~i~ap~~~V~~~l~D~~~~p~~~p~-~~~~~~~~~~-~~~~~~~~~~~~~g~--~~~~~~~~~~~~~~~~i~~   74 (142)
T cd08861           1 VEHSV--TVAAPAEDVYDLLADAERWPEFLPT-VHVERLELDG-GVERLRMWATAFDGS--VHTWTSRRVLDPEGRRIVF   74 (142)
T ss_pred             CeEEE--EEcCCHHHHHHHHHhHHhhhccCCC-ceEEEEEEcC-CEEEEEEEEEcCCCc--EEEEEEEEEEcCCCCEEEE
Confidence            36788  9999999999999999999999998 4443 45322 22 34434443 333  1222455568887888999


Q ss_pred             EEEcCcccceeeeccccccccCCCcceeeEEEEEEEeecCCCcceEEEEEEEEeeCCCCCCHHHHHHHHHHHHHHHHHHH
Q 028067          116 RIVGGDHRLKIIWNFSNFISTSSSKLQNYSSIVTVHPEVIDGRPGTLVIESFVVDVPDGNTKDETCYFVEALIKCNLKSL  195 (214)
Q Consensus       116 ~iv~g~~~~~~~~~~~~~~~~~~~p~~~y~ati~v~p~~~~gs~~t~~~~s~~~~~p~~~~~~~~~~~v~~~~~~gL~~L  195 (214)
                      ..+++..                 ++..+.++.+++|.++++|.+++...+... .|..+....+.+++...+...|++|
T Consensus        75 ~~~~~~~-----------------~~~~~~g~w~~~~~~~~~t~Vt~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~~l  136 (142)
T cd08861          75 RQEEPPP-----------------PVASMSGEWRFEPLGGGGTRVTLRHDFTLG-IDSPEAVPWIRRALDRNSRAELAAL  136 (142)
T ss_pred             EEeeCCC-----------------ChhhheeEEEEEECCCCcEEEEEEEEEEEC-CCCchhHHHHHHHHccccHHHHHHH
Confidence            9887433                 348999999999988677888888776553 2333666778899999999999999


Q ss_pred             HHHHhh
Q 028067          196 ADVSEH  201 (214)
Q Consensus       196 ~~~le~  201 (214)
                      |+.+|.
T Consensus       137 k~~~E~  142 (142)
T cd08861         137 RAAAER  142 (142)
T ss_pred             HHHhhC
Confidence            999874

This family includes the N- and C- terminal aromatase/cyclase (ARO/CYC) domains of Streptomyces rimosus OtcD1 and related domains. It belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. ARO/CYC domains participate in the diversification of aromatic polyketides by promoting polyketide cyclization. They occur in two architectural forms, didomain and monodomain. Didomain aromatase/cyclases (ARO/CYCs), contain two ARO/CYC domains, and are associated with C7-C12 first ring cyclized polyketides. Streptomyces rimosus OtcD1 is a didomain ARO/CYC. The polyketide Oxytetracycline (OTC) is a broad spectrum antibiotic made by Streptomyces rimosus. The gene encoding OtcD1 is part of oxytetracycline (OTC) gene cluster. Disruption of this

>cd07822 SRPBCC_4 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins

Probab=99.51  E-value=2e-12  Score=99.32  Aligned_cols=140  Identities=16%  Similarity=0.078  Sum_probs=93.1

Q ss_pred             eEEEEEeeeecCCHHHHHHHHhcCCCCCccCccceEEEEecCCCCCeEEEEEeeCC-CCcceEEEEEEEEeCCCcEEEEE
Q 028067           38 QCSSSLVKHIKAPVHLVWSLVRRFDQPQKYKPFVSRCIVQGDLQIGSVREVNVKSG-LPATTSTERLELLDDEEHIFGMR  116 (214)
Q Consensus        38 ~ve~sI~~~I~APae~VW~vi~Df~~l~~W~P~V~s~~veG~g~VGsvR~l~~~~G-~p~~~v~ErL~~~D~~~~~~~Y~  116 (214)
                      +++.++  +|+||+++||+++.|+.+++.|.|.+..++... ..+|+...+.+..+ .......++++++|+ .+++.|+
T Consensus         1 ~v~~~~--~i~ap~~~Vw~~~~d~~~~~~w~~~~~~~~~~~-~~~G~~~~~~~~~~~~~~~~~~~~v~~~~p-~~~~~~~   76 (141)
T cd07822           1 TISTEI--EINAPPEKVWEVLTDFPSYPEWNPFVRSATGLS-LALGARLRFVVKLPGGPPRSFKPRVTEVEP-PRRLAWR   76 (141)
T ss_pred             CeEEEE--EecCCHHHHHHHHhccccccccChhheeEeccc-cCCCCEEEEEEeCCCCCcEEEEEEEEEEcC-CCEeEEE
Confidence            367788  999999999999999999999999887665321 45788877766432 122467889999998 5789999


Q ss_pred             EEcCcccceeeeccccccccCCCcceeeEEEEEEEeecCCCcceEEEEEEEEeeCCCCCCHHHHHHHHHHHHHHHHHHHH
Q 028067          117 IVGGDHRLKIIWNFSNFISTSSSKLQNYSSIVTVHPEVIDGRPGTLVIESFVVDVPDGNTKDETCYFVEALIKCNLKSLA  196 (214)
Q Consensus       117 iv~g~~~~~~~~~~~~~~~~~~~p~~~y~ati~v~p~~~~gs~~t~~~~s~~~~~p~~~~~~~~~~~v~~~~~~gL~~L~  196 (214)
                      ...++..                 ......++.|.|.++++|.+++...+.-  .+.......+...+...++..++.|+
T Consensus        77 ~~~~~~~-----------------~~~~~~~~~~~~~~~~~T~~~~~~~~~g--~~~~~~~~~~~~~~~~~~~~~~~~L~  137 (141)
T cd07822          77 GGLPFPG-----------------LLDGEHSFELEPLGDGGTRFVHRETFSG--LLAPLVLLGLGRDLRAGFEAMNEALK  137 (141)
T ss_pred             ecCCCCc-----------------EeeEEEEEEEEEcCCCcEEEEEeeEEEE--EEhHHhhhhhHHHHhHhHHHHHHHHH
Confidence            8665321                 1356788999998657776555432221  22222222344455555555566666


Q ss_pred             HHHh
Q 028067          197 DVSE  200 (214)
Q Consensus       197 ~~le  200 (214)
                      +.+|
T Consensus       138 ~~~E  141 (141)
T cd07822         138 ARAE  141 (141)
T ss_pred             HhhC
Confidence            5554

Uncharacterized group of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.

>cd07818 SRPBCC_1 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins

Probab=99.51  E-value=9.3e-13  Score=104.01  Aligned_cols=139  Identities=14%  Similarity=0.064  Sum_probs=101.7

Q ss_pred             CceEEEEEeeeecCCHHHHHHHHhcCCCCCccCccceEE---EE---ecCCCCCeEEEEEeeCCCCcceEEEEEEEEeCC
Q 028067           36 DHQCSSSLVKHIKAPVHLVWSLVRRFDQPQKYKPFVSRC---IV---QGDLQIGSVREVNVKSGLPATTSTERLELLDDE  109 (214)
Q Consensus        36 ~~~ve~sI~~~I~APae~VW~vi~Df~~l~~W~P~V~s~---~v---eG~g~VGsvR~l~~~~G~p~~~v~ErL~~~D~~  109 (214)
                      +.+++.++  .|+||+++||+++.|+.++++|+|.+..+   ..   .++.++|+...++...+.  .....+++++++ 
T Consensus         1 ~~~~~~s~--~I~ap~e~V~~~i~D~~~~~~W~p~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~--~~~~~~v~~~~p-   75 (150)
T cd07818           1 DYRVERSI--VINAPPEEVFPYVNDLKNWPEWSPWEKLDPDMKRTYSGPDSGVGASYSWEGNDKV--GEGEMEITESVP-   75 (150)
T ss_pred             CeEEEEEE--EEeCCHHHHHHHHhCcccCcccCchhhcCcceEEEecCCCCCCCeEEEEecCCcc--cceEEEEEecCC-
Confidence            35788899  99999999999999999999999977543   21   234468888777655421  134567888887 


Q ss_pred             CcEEEEEEEcCcccceeeeccccccccCCCcc-eeeEEEEEEEeecCCCcceEEEEEEEEeeCCCC----CCHHHHHHHH
Q 028067          110 EHIFGMRIVGGDHRLKIIWNFSNFISTSSSKL-QNYSSIVTVHPEVIDGRPGTLVIESFVVDVPDG----NTKDETCYFV  184 (214)
Q Consensus       110 ~~~~~Y~iv~g~~~~~~~~~~~~~~~~~~~p~-~~y~ati~v~p~~~~gs~~t~~~~s~~~~~p~~----~~~~~~~~~v  184 (214)
                      ++.+.|++..++                  |+ ..+..++.+.|.+ +||.++|...+.   .|..    .....+..++
T Consensus        76 ~~~i~~~~~~~~------------------~~~~~~~~~~~~~~~~-~gT~v~~~~~~~---~~~~~~~~~~~~~~~~~~  133 (150)
T cd07818          76 NERIEYELRFIK------------------PFEATNDVEFTLEPVG-GGTKVTWGMSGE---LPFPLKLMYLFLDMDKMI  133 (150)
T ss_pred             CcEEEEEEEecC------------------CccccceEEEEEEEcC-CceEEEEEEEec---CCchHHHHHHHhhHHHHH
Confidence            578999997532                  22 3788999999995 688777776543   2221    2224456778


Q ss_pred             HHHHHHHHHHHHHHHhh
Q 028067          185 EALIKCNLKSLADVSEH  201 (214)
Q Consensus       185 ~~~~~~gL~~L~~~le~  201 (214)
                      +..+..+|++|++.+|+
T Consensus       134 ~~~~~~~l~~lk~~~E~  150 (150)
T cd07818         134 GKDFEKGLANLKAVLEK  150 (150)
T ss_pred             HHHHHHHHHHHHHHhhC
Confidence            88899999999999986

Uncharacterized group of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.

>cd07819 SRPBCC_2 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins

Probab=99.44  E-value=1.3e-11  Score=95.28  Aligned_cols=135  Identities=15%  Similarity=0.060  Sum_probs=87.5

Q ss_pred             ceEEEEEeeeecCCHHHHHHHHhcCCCCCccCccceEEEE-ec-CCCCCeEEEEEeeCCCCcceEEEEEEEEeC-CCcEE
Q 028067           37 HQCSSSLVKHIKAPVHLVWSLVRRFDQPQKYKPFVSRCIV-QG-DLQIGSVREVNVKSGLPATTSTERLELLDD-EEHIF  113 (214)
Q Consensus        37 ~~ve~sI~~~I~APae~VW~vi~Df~~l~~W~P~V~s~~v-eG-~g~VGsvR~l~~~~G~p~~~v~ErL~~~D~-~~~~~  113 (214)
                      .+++.++  +|+||+++||++|.|+.++++|+|.|.++++ ++ +++.+....+.+..+.   ...+-+.+++. +.+.+
T Consensus         2 ~~v~~s~--~i~ap~e~V~~~l~D~~~~~~w~p~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~i   76 (140)
T cd07819           2 IKVSREF--EIEAPPAAVMDVLADVEAYPEWSPKVKSVEVLLRDNDGRPEMVRIGVGAYG---IKDTYALEYTWDGAGSV   76 (140)
T ss_pred             ceEEEEE--EEeCCHHHHHHHHhChhhhhhhCcceEEEEEeccCCCCCEEEEEEEEeeee---EEEEEEEEEEEcCCCcE
Confidence            4788999  9999999999999999999999999999986 43 3323333334443221   12222223332 25778


Q ss_pred             EEEEEcCcccceeeeccccccccCCCcceeeEEEEEEEeecCCCcceEEEEEEEEeeCCCCCCHHHHHHHHHHHHHHHHH
Q 028067          114 GMRIVGGDHRLKIIWNFSNFISTSSSKLQNYSSIVTVHPEVIDGRPGTLVIESFVVDVPDGNTKDETCYFVEALIKCNLK  193 (214)
Q Consensus       114 ~Y~iv~g~~~~~~~~~~~~~~~~~~~p~~~y~ati~v~p~~~~gs~~t~~~~s~~~~~p~~~~~~~~~~~v~~~~~~gL~  193 (214)
                      +|+..++.                  +...+..++++.|.++ ||.++|...+.. ..|  .....+..+........++
T Consensus        77 ~~~~~~~~------------------~~~~~~~~~~~~~~~~-~t~vt~~~~~~~-~~~--~~~~~~~~~~~~~~~~~~~  134 (140)
T cd07819          77 SWTLVEGE------------------GNRSQEGSYTLTPKGD-GTRVTFDLTVEL-TVP--LPGFLKRKAEPLVLDEALK  134 (140)
T ss_pred             EEEEeccc------------------ceeEEEEEEEEEECCC-CEEEEEEEEEEe-cCC--CCHHHHHHhhhHHHHHHHH
Confidence            99998752                  3478899999999874 787777776543 222  2233344444555555555


Q ss_pred             HHHHH
Q 028067          194 SLADV  198 (214)
Q Consensus       194 ~L~~~  198 (214)
                      +|++.
T Consensus       135 ~l~~~  139 (140)
T cd07819         135 GLKKR  139 (140)
T ss_pred             hHhhh
Confidence            55543

Uncharacterized group of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.

>cd07817 SRPBCC_8 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins

Probab=99.44  E-value=4.6e-12  Score=97.88  Aligned_cols=136  Identities=18%  Similarity=0.153  Sum_probs=94.8

Q ss_pred             EEEEEeeeecCCHHHHHHHHhcCCCCCccCccceEEEEecCCCCCeEEEEEeeCCCCcceEEEEEEEEeCCCcEEEEEEE
Q 028067           39 CSSSLVKHIKAPVHLVWSLVRRFDQPQKYKPFVSRCIVQGDLQIGSVREVNVKSGLPATTSTERLELLDDEEHIFGMRIV  118 (214)
Q Consensus        39 ve~sI~~~I~APae~VW~vi~Df~~l~~W~P~V~s~~veG~g~VGsvR~l~~~~G~p~~~v~ErL~~~D~~~~~~~Y~iv  118 (214)
                      ++.++  +|+||+++||+++.|+.++++|.|.+.++++.+.  .+....+....|.. .....++.+.++ ++.+.|...
T Consensus         2 v~~~i--~I~ap~e~V~~~~~D~~~~~~w~~~~~~~~~~~~--~~~~~~~~~~~g~~-~~~~~~v~~~~~-~~~i~~~~~   75 (139)
T cd07817           2 VEKSI--TVNVPVEEVYDFWRDFENLPRFMSHVESVEQLDD--TRSHWKAKGPAGLS-VEWDAEITEQVP-NERIAWRSV   75 (139)
T ss_pred             eeEEE--EeCCCHHHHHHHHhChhhhHHHhhhhcEEEEcCC--CceEEEEecCCCCc-EEEEEEEeccCC-CCEEEEEEC
Confidence            67888  9999999999999999999999999999986432  22333344433543 346667777777 456899876


Q ss_pred             cCcccceeeeccccccccCCCcceeeEEEEEEEeecCCCcceEEEEEEEEeeC-CCCCCHHHHHHHHHHHHHHHHHHHHH
Q 028067          119 GGDHRLKIIWNFSNFISTSSSKLQNYSSIVTVHPEVIDGRPGTLVIESFVVDV-PDGNTKDETCYFVEALIKCNLKSLAD  197 (214)
Q Consensus       119 ~g~~~~~~~~~~~~~~~~~~~p~~~y~ati~v~p~~~~gs~~t~~~~s~~~~~-p~~~~~~~~~~~v~~~~~~gL~~L~~  197 (214)
                      .|                   ++ .+..++.+.|.++++|.+++...+..... +.......+..+++..++.+|++||+
T Consensus        76 ~~-------------------~~-~~~~~~~f~~~~~~~T~vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lk~  135 (139)
T cd07817          76 EG-------------------AD-PNAGSVRFRPAPGRGTRVTLTIEYEPPGGAEGAAVAGLLGGEPERQLREDLRRFKQ  135 (139)
T ss_pred             CC-------------------CC-CcceEEEEEECCCCCeEEEEEEEEECCcchhhhhHHHHhhhhHHHHHHHHHHHHHH
Confidence            53                   12 56688889997756776776665432111 11122245667788888999999999


Q ss_pred             HHh
Q 028067          198 VSE  200 (214)
Q Consensus       198 ~le  200 (214)
                      .+|
T Consensus       136 ~aE  138 (139)
T cd07817         136 LVE  138 (139)
T ss_pred             Hhh
Confidence            887

Uncharacterized group of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.

>cd07813 COQ10p_like Coenzyme Q-binding protein COQ10p and similar proteins

Probab=99.39  E-value=9e-12  Score=97.58  Aligned_cols=134  Identities=13%  Similarity=0.139  Sum_probs=96.0

Q ss_pred             EEEEeeeecCCHHHHHHHHhcCCCCCccCccceEEEE-ecCCCCCeEEEEEee-CCCCcceEEEEEEEEeCCCcEEEEEE
Q 028067           40 SSSLVKHIKAPVHLVWSLVRRFDQPQKYKPFVSRCIV-QGDLQIGSVREVNVK-SGLPATTSTERLELLDDEEHIFGMRI  117 (214)
Q Consensus        40 e~sI~~~I~APae~VW~vi~Df~~l~~W~P~V~s~~v-eG~g~VGsvR~l~~~-~G~p~~~v~ErL~~~D~~~~~~~Y~i  117 (214)
                      +.++  +|+||+++||+++.|+.++++|.|.|.++++ ++.+ .+....+.+. .|.. ..+..++. +++ .+++.++.
T Consensus         2 ~~s~--~i~ap~~~v~~~i~D~~~~~~~~p~~~~~~vl~~~~-~~~~~~~~~~~~~~~-~~~~~~~~-~~~-~~~i~~~~   75 (138)
T cd07813           2 SKSR--LVPYSAEQMFDLVADVERYPEFLPWCTASRVLERDE-DELEAELTVGFGGIR-ESFTSRVT-LVP-PESIEAEL   75 (138)
T ss_pred             eEEE--EcCCCHHHHHHHHHHHHhhhhhcCCccccEEEEcCC-CEEEEEEEEeecccc-EEEEEEEE-ecC-CCEEEEEe
Confidence            5677  9999999999999999999999999999986 4332 3444444443 2221 13445554 676 56788888


Q ss_pred             EcCcccceeeeccccccccCCCcceeeEEEEEEEeecCCCcceEEEEEEEEeeCCCCCCHHHHHHHHHHHHHHHHHHHHH
Q 028067          118 VGGDHRLKIIWNFSNFISTSSSKLQNYSSIVTVHPEVIDGRPGTLVIESFVVDVPDGNTKDETCYFVEALIKCNLKSLAD  197 (214)
Q Consensus       118 v~g~~~~~~~~~~~~~~~~~~~p~~~y~ati~v~p~~~~gs~~t~~~~s~~~~~p~~~~~~~~~~~v~~~~~~gL~~L~~  197 (214)
                      ++|                   +++.+.++.++.|.++++|.+++...+..   +-+.....+..++.......|+++++
T Consensus        76 ~~g-------------------~~~~~~g~w~~~p~~~~~T~v~~~~~~~~---~~~l~~~l~~~~~~~~~~~~l~~f~~  133 (138)
T cd07813          76 VDG-------------------PFKHLEGEWRFKPLGENACKVEFDLEFEF---KSRLLEALAGLVFDEVAKKMVDAFEK  133 (138)
T ss_pred             cCC-------------------ChhhceeEEEEEECCCCCEEEEEEEEEEE---CCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            775                   34788999999999877887777776543   32233345667778888888888888


Q ss_pred             HHhh
Q 028067          198 VSEH  201 (214)
Q Consensus       198 ~le~  201 (214)
                      ++++
T Consensus       134 ~~~~  137 (138)
T cd07813         134 RAKQ  137 (138)
T ss_pred             HHhh
Confidence            7764

Coenzyme Q-binding protein COQ10p and similar proteins. COQ10p is a hydrophobic protein located in the inner membrane of mitochondria that binds coenzyme Q (CoQ), also called ubiquinone, which is an essential electron carrier of the respiratory chain. Deletion of the gene encoding COQ10p (COQ10 or YOL008W) in Saccharomyces cerevisiae results in respiratory defect because of the inability to oxidize NADH and succinate. COQ10p may function in the delivery of CoQ (Q6 in budding yeast) to its proper location for electron transport. The human homolog, called Q-binding protein COQ10 homolog A (COQ10A), is able to fully complement for the absence of COQ10p in fission yeast. Human COQ10A also has a splice variant COQ10B. COQ10p belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket and the

>cd07814 SRPBCC_CalC_Aha1-like Putative hydrophobic ligand-binding SRPBCC domain of Micromonospora echinospora CalC, human Aha1, and related proteins

Probab=99.37  E-value=1.7e-11  Score=94.49  Aligned_cols=137  Identities=14%  Similarity=0.046  Sum_probs=95.2

Q ss_pred             EEEEEeeeecCCHHHHHHHHhcCCCCCccCccceEEEEecCCCCCeEEEEEee-CCCCcceEEEEEEEEeCCCcEEEEEE
Q 028067           39 CSSSLVKHIKAPVHLVWSLVRRFDQPQKYKPFVSRCIVQGDLQIGSVREVNVK-SGLPATTSTERLELLDDEEHIFGMRI  117 (214)
Q Consensus        39 ve~sI~~~I~APae~VW~vi~Df~~l~~W~P~V~s~~veG~g~VGsvR~l~~~-~G~p~~~v~ErL~~~D~~~~~~~Y~i  117 (214)
                      ++.++  +|+||+++||+++.|+.+++.|.|.+..+.++-.. .|+.+.+... .|.. ..++.+++++|+ ++.+.|+.
T Consensus         2 i~~s~--~I~a~~~~Vw~~l~d~~~~~~w~~~~~~~~~~~~~-Gg~~~~~~~~~~g~~-~~~~~~i~~~~~-~~~i~~~~   76 (139)
T cd07814           2 ITIER--EFDAPPELVWRALTDPELLAQWFGPTTTAEMDLRV-GGRWFFFMTGPDGEE-GWVSGEVLEVEP-PRRLVFTW   76 (139)
T ss_pred             eEEEE--EecCCHHHHHHHcCCHHHHHhhhCcCCceEEcccC-CceEEEEEECCCCCE-EeccEEEEEEcC-CCeEEEEe
Confidence            67788  99999999999999999999999863333322111 1666654432 2221 357889999998 57899999


Q ss_pred             EcCcccceeeeccccccccCCCcceeeEEEEEEEeecCCCcceEEEEEEEEeeCCCCCCHHHHHHHHHHHHHHHHHHHHH
Q 028067          118 VGGDHRLKIIWNFSNFISTSSSKLQNYSSIVTVHPEVIDGRPGTLVIESFVVDVPDGNTKDETCYFVEALIKCNLKSLAD  197 (214)
Q Consensus       118 v~g~~~~~~~~~~~~~~~~~~~p~~~y~ati~v~p~~~~gs~~t~~~~s~~~~~p~~~~~~~~~~~v~~~~~~gL~~L~~  197 (214)
                      ..++.                .+......++++.|.+ ++|.+++...+.....+    .......+..-+...|+.||+
T Consensus        77 ~~~~~----------------~~~~~~~~~~~~~~~~-~~T~v~~~~~~~~~~~~----~~~~~~~~~~~~~~~l~~lk~  135 (139)
T cd07814          77 AFSDE----------------TPGPETTVTVTLEETG-GGTRLTLTHSGFPEEDA----EQEAREGMEEGWTGTLDRLKA  135 (139)
T ss_pred             cccCC----------------CCCCceEEEEEEEECC-CCEEEEEEEEccChHhH----HHHHHhCHhhHHHHHHHHHHH
Confidence            77532                0235788899999988 67877777654331111    234455667788888999999


Q ss_pred             HHhh
Q 028067          198 VSEH  201 (214)
Q Consensus       198 ~le~  201 (214)
                      .+|+
T Consensus       136 ~~E~  139 (139)
T cd07814         136 LLEK  139 (139)
T ss_pred             HhhC
Confidence            9985

This family includes the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain of Micromonospora echinospora CalC, human Aha1, and related proteins. Proteins in this group belong to the SRPBCC domain superfamily of proteins, which bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. MeCalC confers resistance to the enediyne, calicheamicin gamma 1 (CLM), by a self sacrificing mechanism which results in inactivation of both CalC and the highly reactive diradical enediyne species. MeCalC can also inactivate two other enediynes, shishijimicin and namenamicin. A crucial Gly of the MeCalC CLM resistance mechanism is not conserved in this subgroup. This family also includes the C-terminal, Bet v1-like domain of Aha1, one of several co-chaperones, which regulate the dimeric chaperone Hsp90. Aha1 promotes dimer

>cd08860 TcmN_ARO-CYC_like N-terminal aromatase/cyclase domain of the multifunctional protein tetracenomycin (TcmN) and related domains

Probab=99.37  E-value=3.5e-11  Score=97.31  Aligned_cols=141  Identities=12%  Similarity=0.065  Sum_probs=99.2

Q ss_pred             eEEEEEeeeecCCHHHHHHHHhcCCCCCccCccceEEEE-e-cCCCCCeEEEEEe-eCCCCcceEEEEEEEEeCCCcEEE
Q 028067           38 QCSSSLVKHIKAPVHLVWSLVRRFDQPQKYKPFVSRCIV-Q-GDLQIGSVREVNV-KSGLPATTSTERLELLDDEEHIFG  114 (214)
Q Consensus        38 ~ve~sI~~~I~APae~VW~vi~Df~~l~~W~P~V~s~~v-e-G~g~VGsvR~l~~-~~G~p~~~v~ErL~~~D~~~~~~~  114 (214)
                      ..+.+|  +|+|||++||+++.|+.+++.|.|.+..+++ + |+.++|..-.+.. .+|.+..+..| . .+|+..+++.
T Consensus         2 ~~~~si--~i~a~~~~v~~lvaDv~~~P~~~~~~~~~~~l~~~~~~~~~r~~i~~~~~g~~~~w~s~-~-~~~~~~~~i~   77 (146)
T cd08860           2 RTDNSI--VIDAPLDLVWDMTNDIATWPDLFSEYAEAEVLEEDGDTVRFRLTMHPDANGTVWSWVSE-R-TLDPVNRTVR   77 (146)
T ss_pred             cceeEE--EEcCCHHHHHHHHHhhhhhhhhccceEEEEEEEecCCeEEEEEEEEeccCCEEEEEEEE-E-EecCCCcEEE
Confidence            457889  9999999999999999999999999999986 4 4444553322222 24432222222 2 2677777777


Q ss_pred             EE-EEcCcccceeeeccccccccCCCcceeeEEEEEEEeecCCCcceEEEEEEEEeeCCCCCCHHHHHHHHHHHHHHHHH
Q 028067          115 MR-IVGGDHRLKIIWNFSNFISTSSSKLQNYSSIVTVHPEVIDGRPGTLVIESFVVDVPDGNTKDETCYFVEALIKCNLK  193 (214)
Q Consensus       115 Y~-iv~g~~~~~~~~~~~~~~~~~~~p~~~y~ati~v~p~~~~gs~~t~~~~s~~~~~p~~~~~~~~~~~v~~~~~~gL~  193 (214)
                      ++ ...                   .|+..-..+.+++|.+ +||.+++...+...+ ...+....+.++++..+...|+
T Consensus        78 ~~~~~~-------------------~p~~~m~~~W~f~~~~-~gT~V~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~l~  136 (146)
T cd08860          78 ARRVET-------------------GPFAYMNIRWEYTEVP-EGTRMRWVQDFEMKP-GAPVDDAAMTDRLNTNTRAQMA  136 (146)
T ss_pred             EEEecC-------------------CCcceeeeeEEEEECC-CCEEEEEEEEEEECC-CCccchHHHHHHHhcccHHHHH
Confidence            64 212                   2568899999999986 568888888766432 1133344577888999999999


Q ss_pred             HHHHHHhhhh
Q 028067          194 SLADVSEHLA  203 (214)
Q Consensus       194 ~L~~~le~~a  203 (214)
                      +||+.+|+.|
T Consensus       137 ~Lk~~aE~~~  146 (146)
T cd08860         137 RIKKKIEAAA  146 (146)
T ss_pred             HHHHHhhhcC
Confidence            9999999854

This family includes the N-terminal aromatase/cyclase (ARO/CYC) domain of Streptomyces glaucescens TcmN, and related domains. It belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. ARO/CYC domains participate in the diversification of aromatic polyketides by promoting polyketide cyclization. They occur in two architectural forms, monodomain and didomain. Monodomain aromatase/cyclases have a single ARO/CYC domain. For some, such as TcmN, this single domain is linked to a second domain of unrelated function. TcmN is a multifunctional cyclase-dehydratase-O-methyl transferase. Its N-terminal ARO/CYC domain participates in polyketide binding and catalysis; it promotes C9-C14 first-ring (and C7-C16 second-ring) cyclizations.

>cd07825 SRPBCC_7 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins

Probab=99.30  E-value=6.3e-11  Score=92.75  Aligned_cols=138  Identities=16%  Similarity=0.126  Sum_probs=89.6

Q ss_pred             eEEEEEeeeecCCHHHHHHHHhcCCCCCccCccceEEEE-e--cCCCCCeEEEEEeeC-CCCcceEEEEEEEEeCCCcEE
Q 028067           38 QCSSSLVKHIKAPVHLVWSLVRRFDQPQKYKPFVSRCIV-Q--GDLQIGSVREVNVKS-GLPATTSTERLELLDDEEHIF  113 (214)
Q Consensus        38 ~ve~sI~~~I~APae~VW~vi~Df~~l~~W~P~V~s~~v-e--G~g~VGsvR~l~~~~-G~p~~~v~ErL~~~D~~~~~~  113 (214)
                      +++.++  +|+||+++||+++.|+.+++.|.|....... .  ++..+|....+.... |.+ ..+..++++++| ++.+
T Consensus         1 ~i~~~~--~i~ap~e~Vw~~l~d~~~~~~W~~~~~~~~~~~~~~~~~~G~~~~~~~~~~g~~-~~~~~~v~~~~p-~~~l   76 (144)
T cd07825           1 QVSVSR--TVDAPAEAVFAVLADPRRHPEIDGSGTVREAIDGPRILAVGDVFRMAMRLDGGP-YRITNHVVAFEE-NRLI   76 (144)
T ss_pred             CeEEEE--EEeCCHHHHHHHHhCccccceeCCCCccccccCCCccCCCCCEEEEEEEcCCCc-eEEEEEEEEECC-CCEE
Confidence            367788  9999999999999999999999985332222 2  335688887766542 333 356778999999 5779


Q ss_pred             EEEEEcCcccceeeeccccccccCCCcceeeEEEEEEEeecCCCcceEEEEEEEEeeCCCCCCHH--HHHHHHHHHHHHH
Q 028067          114 GMRIVGGDHRLKIIWNFSNFISTSSSKLQNYSSIVTVHPEVIDGRPGTLVIESFVVDVPDGNTKD--ETCYFVEALIKCN  191 (214)
Q Consensus       114 ~Y~iv~g~~~~~~~~~~~~~~~~~~~p~~~y~ati~v~p~~~~gs~~t~~~~s~~~~~p~~~~~~--~~~~~v~~~~~~g  191 (214)
                      .|+....+                 .+......+++++|.++++|.+++...+   ..+.. ...  .+......-++..
T Consensus        77 ~~~~~~~~-----------------~~~~~~~~~~~l~~~~~g~T~vt~~~~~---~g~~~-~~~~~~~~~~~~~g~~~~  135 (144)
T cd07825          77 AWRPGPAG-----------------QEPGGHRWRWELEPIGPGRTRVTETYDW---SAVTD-LKELLGFPAFPEVQLEAS  135 (144)
T ss_pred             EEEccCCC-----------------CCCCceeEEEEEEECCCCcEEEEEEEec---cCChh-hhhccccCCCCHHHHHHH
Confidence            99863211                 1224566788999987666755555432   21111 000  1112345667788


Q ss_pred             HHHHHHHHh
Q 028067          192 LKSLADVSE  200 (214)
Q Consensus       192 L~~L~~~le  200 (214)
                      |+.|++++|
T Consensus       136 l~~L~~~~~  144 (144)
T cd07825         136 LDRLATLAE  144 (144)
T ss_pred             HHHHHHHhC
Confidence            888888875

Uncharacterized group of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.

>cd07824 SRPBCC_6 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins

Probab=99.30  E-value=1.8e-10  Score=91.51  Aligned_cols=134  Identities=19%  Similarity=0.218  Sum_probs=87.7

Q ss_pred             EEEEeeeecCCHHHHHHHHhcCCCCCccCccceEEEE-e--cCCCCCeEEEEEeeCCCCc-ceEEEEEEEEeCCCcEEEE
Q 028067           40 SSSLVKHIKAPVHLVWSLVRRFDQPQKYKPFVSRCIV-Q--GDLQIGSVREVNVKSGLPA-TTSTERLELLDDEEHIFGM  115 (214)
Q Consensus        40 e~sI~~~I~APae~VW~vi~Df~~l~~W~P~V~s~~v-e--G~g~VGsvR~l~~~~G~p~-~~v~ErL~~~D~~~~~~~Y  115 (214)
                      +.+.  +|+||+++||++++|+.++++|.|.+.++++ +  ++.++|+..++......|. ..++-++.+.++ .+.+.|
T Consensus         4 ~~~~--~i~ap~e~Vw~~~tD~~~~~~w~~~v~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~v~~~~p-~~~~~~   80 (146)
T cd07824           4 HTVW--RIPAPPEAVWDVLVDAESWPDWWPGVERVVELEPGDEAGIGARRRYTWRGLLPYRLRFELRVTRIEP-LSLLEV   80 (146)
T ss_pred             eEEE--EecCCHHHHHHHHhChhhcchhhhceEEEEEccCCCCCCcceEEEEEEEecCCcEEEEEEEEEeecC-CcEEEE
Confidence            4556  8999999999999999999999999999975 4  3456777755443222221 245667778877 578888


Q ss_pred             EEEcCcccceeeeccccccccCCCcceeeEEEEEEEeecCCCcceEEEEEEEEee----CCCCCCHHHHHHHHHHHHHHH
Q 028067          116 RIVGGDHRLKIIWNFSNFISTSSSKLQNYSSIVTVHPEVIDGRPGTLVIESFVVD----VPDGNTKDETCYFVEALIKCN  191 (214)
Q Consensus       116 ~iv~g~~~~~~~~~~~~~~~~~~~p~~~y~ati~v~p~~~~gs~~t~~~~s~~~~----~p~~~~~~~~~~~v~~~~~~g  191 (214)
                      +. +|+  +                 . ...+++|.|.+ +||.+++.+......    ....+....+....+.++...
T Consensus        81 ~~-~g~--~-----------------~-~~~~~~~~~~~-~gt~vt~~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~~~  138 (146)
T cd07824          81 RA-SGD--L-----------------E-GVGRWTLAPDG-SGTVVRYDWEVRTTKPWMNLLAPLARPVFRWNHRRVMRAG  138 (146)
T ss_pred             EE-EEe--e-----------------e-EEEEEEEEEcC-CCEEEEEEEEEEcCHHHHHhhhHhhhhHHHHhHHHHHHhH
Confidence            85 432  2                 2 36888999976 678777776544311    112333334455555666666


Q ss_pred             HHHHHHH
Q 028067          192 LKSLADV  198 (214)
Q Consensus       192 L~~L~~~  198 (214)
                      +++||++
T Consensus       139 ~~~L~~~  145 (146)
T cd07824         139 EKGLARR  145 (146)
T ss_pred             HHHHHhh
Confidence            6666654

Uncharacterized group of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.

>cd05018 CoxG Carbon monoxide dehydrogenase subunit G (CoxG)

Probab=99.28  E-value=1.3e-10  Score=90.10  Aligned_cols=142  Identities=16%  Similarity=0.107  Sum_probs=92.3

Q ss_pred             eEEEEEeeeecCCHHHHHHHHhcCCCCCccCccceEEEEecCCCCCeEEEEEeeCCCC-cceEEEEEEEEeCCCcEEEEE
Q 028067           38 QCSSSLVKHIKAPVHLVWSLVRRFDQPQKYKPFVSRCIVQGDLQIGSVREVNVKSGLP-ATTSTERLELLDDEEHIFGMR  116 (214)
Q Consensus        38 ~ve~sI~~~I~APae~VW~vi~Df~~l~~W~P~V~s~~veG~g~VGsvR~l~~~~G~p-~~~v~ErL~~~D~~~~~~~Y~  116 (214)
                      +++.++  +|++|+++||++++|+.++++|.|.+.++++.+++.......+.+ .+.. ....+.++.+.|+. +.+.++
T Consensus         2 ~~~~~~--~i~a~~e~v~~~l~D~~~~~~w~p~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~-~~~~~~   77 (144)
T cd05018           2 KISGEF--RIPAPPEEVWAALNDPEVLARCIPGCESLEKIGPNEYEATVKLKV-GPVKGTFKGKVELSDLDPP-ESYTIT   77 (144)
T ss_pred             eeeeEE--EecCCHHHHHHHhcCHHHHHhhccchhhccccCCCeEEEEEEEEE-ccEEEEEEEEEEEEecCCC-cEEEEE
Confidence            467788  999999999999999999999999999887543221111111222 1110 01235566677764 667777


Q ss_pred             EEcCcccceeeeccccccccCCCcceeeEEEEEEEeecCCCcceEEEEEEEEeeCCCCCCHHHHHHHHHHHHHHHHHHHH
Q 028067          117 IVGGDHRLKIIWNFSNFISTSSSKLQNYSSIVTVHPEVIDGRPGTLVIESFVVDVPDGNTKDETCYFVEALIKCNLKSLA  196 (214)
Q Consensus       117 iv~g~~~~~~~~~~~~~~~~~~~p~~~y~ati~v~p~~~~gs~~t~~~~s~~~~~p~~~~~~~~~~~v~~~~~~gL~~L~  196 (214)
                      ....+.                .....+..++.+.|. ++||.++|..++....+-..+....+..++...+..-+++|+
T Consensus        78 ~~~~~~----------------~~~~~~~~~~~l~~~-~~gT~v~~~~~~~~~g~l~~l~~~~~~~~~~~~~~~~~~~l~  140 (144)
T cd05018          78 GEGKGG----------------AGFVKGTARVTLEPD-GGGTRLTYTADAQVGGKLAQLGSRLIDGAARKLINQFFENLA  140 (144)
T ss_pred             EEEcCC----------------CceEEEEEEEEEEec-CCcEEEEEEEEEEEccChhhhCHHHHHHHHHHHHHHHHHHHH
Confidence            653211                123689999999998 578888888876542221122445566777777777788888


Q ss_pred             HHHh
Q 028067          197 DVSE  200 (214)
Q Consensus       197 ~~le  200 (214)
                      +.++
T Consensus       141 ~~~~  144 (144)
T cd05018         141 SKIG  144 (144)
T ss_pred             HhhC
Confidence            7653

CoxG has been shown, in Oligotropha carboxidovorans, to anchor the carbon monoxide (CO) dehydrogenase to the cytoplasmic membrane. The gene encoding CoxG is part of the Cox cluster (coxBCMSLDEFGHIK) located on a low-copy-number, circular, megaplasmid pHCG3. This cluster includes genes encoding subunits of CO dehydrogenase and several accessory components involved in the utilization of CO. This family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands.

>cd07812 SRPBCC START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC (SRPBCC) ligand-binding domain superfamily

Probab=99.20  E-value=1.4e-09  Score=80.43  Aligned_cols=133  Identities=22%  Similarity=0.221  Sum_probs=89.0

Q ss_pred             EEEEeeeecCCHHHHHHHHhcCCCCCccCccceEEEEe--cCCCCCeEEEEEeeCCCCcceEEEEEEEEeCCCcEEEEEE
Q 028067           40 SSSLVKHIKAPVHLVWSLVRRFDQPQKYKPFVSRCIVQ--GDLQIGSVREVNVKSGLPATTSTERLELLDDEEHIFGMRI  117 (214)
Q Consensus        40 e~sI~~~I~APae~VW~vi~Df~~l~~W~P~V~s~~ve--G~g~VGsvR~l~~~~G~p~~~v~ErL~~~D~~~~~~~Y~i  117 (214)
                      +.++  .|+||+++||+++.|+.+++.|.|.+.++++.  +....|....+....+. ......++..+++ +..++|+.
T Consensus         2 ~~~~--~i~a~~~~v~~~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~v~~~~~-~~~~~~~~   77 (141)
T cd07812           2 EASI--EIPAPPEAVWDLLSDPERWPEWSPGLERVEVLGGGEGGVGARFVGGRKGGR-RLTLTSEVTEVDP-PRPGRFRV   77 (141)
T ss_pred             cEEE--EeCCCHHHHHHHHhChhhhhhhCcccceEEEcCCCCccceeEEEEEecCCc-cccceEEEEEecC-CCceEEEE
Confidence            3456  89999999999999999999999999999864  33456666665553121 1357888999988 67789998


Q ss_pred             EcCcccceeeeccccccccCCCcceeeEEEEEEEeecCCCcceEEEEEEEEeeCCCCC---CHHHHHHHHHHHHHHHHHH
Q 028067          118 VGGDHRLKIIWNFSNFISTSSSKLQNYSSIVTVHPEVIDGRPGTLVIESFVVDVPDGN---TKDETCYFVEALIKCNLKS  194 (214)
Q Consensus       118 v~g~~~~~~~~~~~~~~~~~~~p~~~y~ati~v~p~~~~gs~~t~~~~s~~~~~p~~~---~~~~~~~~v~~~~~~gL~~  194 (214)
                      ..++.                 + ..+..++.+.+.++++|.+++...+   .++...   ....+.+++...+...+++
T Consensus        78 ~~~~~-----------------~-~~~~~~~~~~~~~~~~t~v~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~  136 (141)
T cd07812          78 TGGGG-----------------G-VDGTGEWRLEPEGDGGTRVTYTVEY---DPPGPLLKVFALLLAGALKRELAALLRA  136 (141)
T ss_pred             ecCCC-----------------C-cceeEEEEEEECCCCcEEEEEEEEE---ecCCcchhhhhHHHHHHHHhHHHHHHHH
Confidence            77532                 1 4788999999987447655555433   332222   2334445555555555555


Q ss_pred             HHH
Q 028067          195 LAD  197 (214)
Q Consensus       195 L~~  197 (214)
                      |++
T Consensus       137 ~~~  139 (141)
T cd07812         137 LKA  139 (141)
T ss_pred             HHh
Confidence            544

SRPBCC domains have a deep hydrophobic ligand-binding pocket; they bind diverse ligands. Included in this superfamily are the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, and the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), as well as the SRPBCC domains of phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of this superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.

>cd07823 SRPBCC_5 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins

Probab=99.10  E-value=2.4e-09  Score=85.11  Aligned_cols=142  Identities=18%  Similarity=0.147  Sum_probs=88.5

Q ss_pred             EEEEeeeecCCHHHHHHHHhcCCCCCccCccceEEEEecCCCCCeEEEEEeeCCCCcceE--EEEEEEEeCCCcEEEEEE
Q 028067           40 SSSLVKHIKAPVHLVWSLVRRFDQPQKYKPFVSRCIVQGDLQIGSVREVNVKSGLPATTS--TERLELLDDEEHIFGMRI  117 (214)
Q Consensus        40 e~sI~~~I~APae~VW~vi~Df~~l~~W~P~V~s~~veG~g~VGsvR~l~~~~G~p~~~v--~ErL~~~D~~~~~~~Y~i  117 (214)
                      +.++  +|+|||++||++++|+.+++.|.|.+.+.+..|++...  -.+++.-|.-...+  +=++.+++++.+.+.+..
T Consensus         2 ~~~~--~v~a~pe~vw~~l~D~~~~~~~~pg~~~~~~~~~~~~~--~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~   77 (146)
T cd07823           2 ENEF--TVPAPPDRVWALLLDIERVAPCLPGASLTEVEGDDEYK--GTVKVKLGPISASFKGTARLLEDDEAARRAVLEA   77 (146)
T ss_pred             CceE--EecCCHHHHHHHhcCHHHHHhcCCCceeccccCCCeEE--EEEEEEEccEEEEEEEEEEEEeccCCCcEEEEEE
Confidence            4577  89999999999999999999999999888754432221  22333322100011  225666774578888775


Q ss_pred             EcCcccceeeeccccccccCCCcceeeEEEEEEEeecCCCcceEEEEEEEEeeCCCCCCHHHHHHHHHHHHHHHHHHHHH
Q 028067          118 VGGDHRLKIIWNFSNFISTSSSKLQNYSSIVTVHPEVIDGRPGTLVIESFVVDVPDGNTKDETCYFVEALIKCNLKSLAD  197 (214)
Q Consensus       118 v~g~~~~~~~~~~~~~~~~~~~p~~~y~ati~v~p~~~~gs~~t~~~~s~~~~~p~~~~~~~~~~~v~~~~~~gL~~L~~  197 (214)
                      ...+...              ..--....++++.|.+ ++|.++|..+...-.+-.......+++..+..+..-+++|++
T Consensus        78 ~g~~~~~--------------~g~~~~~~~~~l~~~~-~gT~v~~~~~~~~~g~l~~l~~~~v~~~~~~~~~~~~~~l~~  142 (146)
T cd07823          78 TGKDARG--------------QGTAEATVTLRLSPAG-GGTRVTVDTDLALTGKLAQFGRGGIGDVAGRLLAQFAANLEA  142 (146)
T ss_pred             EEecCCC--------------cceEEEEEEEEEEecC-CcEEEEEEEEEEEeeEhHHhChhHHHHHHHHHHHHHHHHHHH
Confidence            4411111              0001467788888844 778777777654322222334445667777777777888888


Q ss_pred             HHh
Q 028067          198 VSE  200 (214)
Q Consensus       198 ~le  200 (214)
                      ++|
T Consensus       143 ~~e  145 (146)
T cd07823         143 RLA  145 (146)
T ss_pred             Hhc
Confidence            876

Uncharacterized group of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.

>cd07820 SRPBCC_3 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins

Probab=99.08  E-value=5.8e-09  Score=82.02  Aligned_cols=103  Identities=19%  Similarity=0.208  Sum_probs=77.6

Q ss_pred             EEEEeeeecCCHHHHHHHHhcCCCCCccCccceEEEEe----cCCCCCeEEEEEeeC-CCCcceEEEEEEEEeCCCcEEE
Q 028067           40 SSSLVKHIKAPVHLVWSLVRRFDQPQKYKPFVSRCIVQ----GDLQIGSVREVNVKS-GLPATTSTERLELLDDEEHIFG  114 (214)
Q Consensus        40 e~sI~~~I~APae~VW~vi~Df~~l~~W~P~V~s~~ve----G~g~VGsvR~l~~~~-G~p~~~v~ErL~~~D~~~~~~~  114 (214)
                      +.++  +|+||+++||++++|+.+++.|.|.+.++++.    |...+|+.-.+++.. |.+ ...+-+++++++ ++.|.
T Consensus         2 ~~s~--~I~ap~e~V~~~~~d~~~~~~~~p~~~~v~~~~~~~~~~~~G~~~~~~~~~~~~~-~~w~~~it~~~p-~~~f~   77 (137)
T cd07820           2 ERST--VIPAPIEEVFDFHSRPDNLERLTPPWLEFAVLGRTPGLIYGGARVTYRLRHFGIP-QRWTTEITEVEP-PRRFV   77 (137)
T ss_pred             eEEE--EcCCCHHHHHHHHcCcchHHhcCCCCCCeEEEecCCCcccCCcEEEEEEEecCCc-eEEEEEEEEEcC-CCeEE
Confidence            5678  99999999999999999999999999888763    223467776666653 322 245677888887 57799


Q ss_pred             EEEEcCcccceeeeccccccccCCCcceeeEEEEEEEeecCCCcceEEEEEE
Q 028067          115 MRIVGGDHRLKIIWNFSNFISTSSSKLQNYSSIVTVHPEVIDGRPGTLVIES  166 (214)
Q Consensus       115 Y~iv~g~~~~~~~~~~~~~~~~~~~p~~~y~ati~v~p~~~~gs~~t~~~~s  166 (214)
                      +..+.|                   |+..+..+..+.|.+ +||.+|....+
T Consensus        78 ~~~~~G-------------------~~~~w~h~~~f~~~~-~gT~vt~~v~~  109 (137)
T cd07820          78 DEQVSG-------------------PFRSWRHTHRFEAIG-GGTLMTDRVEY  109 (137)
T ss_pred             EEeccC-------------------CchhCEEEEEEEECC-CceEEEEEEEE
Confidence            987765                   346777888898877 47777777654

Uncharacterized group of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.

>PF03364 Polyketide_cyc: Polyketide cyclase / dehydrase and lipid transport; InterPro: IPR005031 Members of this family of enzymes from Streptomyces spp

Probab=98.97  E-value=2e-08  Score=77.34  Aligned_cols=126  Identities=19%  Similarity=0.262  Sum_probs=81.7

Q ss_pred             ecCCHHHHHHHHhcCCCCCccCccceEEEE-ecCCCCCeEEEEEee-CCCCcceEEEEEEEEeCCCcEEEEEEEcCcccc
Q 028067           47 IKAPVHLVWSLVRRFDQPQKYKPFVSRCIV-QGDLQIGSVREVNVK-SGLPATTSTERLELLDDEEHIFGMRIVGGDHRL  124 (214)
Q Consensus        47 I~APae~VW~vi~Df~~l~~W~P~V~s~~v-eG~g~VGsvR~l~~~-~G~p~~~v~ErL~~~D~~~~~~~Y~iv~g~~~~  124 (214)
                      |+||+++||++++|+.+++.|.|.+.++++ +.++. +..-.+.+. .+.+ .....++....+. . +.+..++|    
T Consensus         1 V~ap~~~V~~~i~D~e~~~~~~p~~~~v~vl~~~~~-~~~~~~~~~~~~~~-~~~~~~~~~~~~~-~-~~~~~~~g----   72 (130)
T PF03364_consen    1 VNAPPEEVWSVITDYENYPRFFPPVKEVRVLERDGD-GMRARWEVKFGGIK-RSWTSRVTEDPPE-R-IRFEQISG----   72 (130)
T ss_dssp             ESS-HHHHHHHHTTGGGHHHHCTTEEEEEEEEEECC-EEEEEEEECTTTTC-EEEEEEEEEECTT-T-EEEESSET----
T ss_pred             CCCCHHHHHHHHHHHHHHHHhCCCCceEEEEEeCCC-eEEEEEEEecCCEE-EEEEEEEEEEEee-e-eeeeecCC----
Confidence            689999999999999999999999999985 43221 222233443 2322 3456677655554 4 66666664    


Q ss_pred             eeeeccccccccCCCcceeeEEEEEEEeecC--CCcceEEEEEEEEeeCCCCCCHHHHHHHHHHHHHHHHHHHH
Q 028067          125 KIIWNFSNFISTSSSKLQNYSSIVTVHPEVI--DGRPGTLVIESFVVDVPDGNTKDETCYFVEALIKCNLKSLA  196 (214)
Q Consensus       125 ~~~~~~~~~~~~~~~p~~~y~ati~v~p~~~--~gs~~t~~~~s~~~~~p~~~~~~~~~~~v~~~~~~gL~~L~  196 (214)
                                     |++.+.++.++.|.++  +|+.+.+..... ++++.......+..+++......|++|+
T Consensus        73 ---------------~~~~~~g~W~~~~~~~~~~g~~~~v~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~  130 (130)
T PF03364_consen   73 ---------------PFKSFEGSWRFEPLGGNEGGTRTRVTYDYE-VDPPGPLPGFLARQFFRRDLRQMLEAFR  130 (130)
T ss_dssp             ---------------TEEEEEEEEEEEEETTECCEEEEEEEEEEE-EETSSSSHHHHHHHHHHHHHHHHHHHHH
T ss_pred             ---------------CchhcEEEEEEEECCCCcCCCEEEEEEEEE-EecCcHhHHHHHHHHHHHHHHHHHHhhC
Confidence                           5599999999999873  155444444333 3555555555666666777666666653

are involved in polyketide (linear poly-beta-ketones) synthesis.; PDB: 1T17_A 3GGN_B 2KCZ_A 2D4R_B 2REZ_A 2RES_A 3TVQ_A 2RER_A 2KF2_A 3TL1_A ....

>PRK10724 hypothetical protein; Provisional

Probab=98.94  E-value=4e-08  Score=80.77  Aligned_cols=134  Identities=14%  Similarity=0.103  Sum_probs=90.5

Q ss_pred             ceEEEEEeeeecCCHHHHHHHHhcCCCCCccCccceEEEE-e-cCCCCCeEEEEEee-CCCCcceEEEEEEEEeCCCcEE
Q 028067           37 HQCSSSLVKHIKAPVHLVWSLVRRFDQPQKYKPFVSRCIV-Q-GDLQIGSVREVNVK-SGLPATTSTERLELLDDEEHIF  113 (214)
Q Consensus        37 ~~ve~sI~~~I~APae~VW~vi~Df~~l~~W~P~V~s~~v-e-G~g~VGsvR~l~~~-~G~p~~~v~ErL~~~D~~~~~~  113 (214)
                      .++.+++  .|++|++++|+++.|..+++.|.|.|.++++ + .++  +....+++. .|. ....+.|.. +++. +++
T Consensus        15 ~~i~~~~--~v~~s~~~v~~lv~Dve~yp~flp~~~~s~vl~~~~~--~~~a~l~v~~~g~-~~~f~srv~-~~~~-~~I   87 (158)
T PRK10724         15 PQISRTA--LVPYSAEQMYQLVNDVQSYPQFLPGCTGSRVLESTPG--QMTAAVDVSKAGI-SKTFTTRNQ-LTSN-QSI   87 (158)
T ss_pred             CeEEEEE--EecCCHHHHHHHHHHHHHHHHhCcccCeEEEEEecCC--EEEEEEEEeeCCc-cEEEEEEEE-ecCC-CEE
Confidence            4678888  9999999999999999999999999999986 3 222  223334443 332 134555555 4553 578


Q ss_pred             EEEEEcCcccceeeeccccccccCCCcceeeEEEEEEEeecCCCcceEEEEEEEEeeCCCCCCHHHHHHHHHHHHHHHHH
Q 028067          114 GMRIVGGDHRLKIIWNFSNFISTSSSKLQNYSSIVTVHPEVIDGRPGTLVIESFVVDVPDGNTKDETCYFVEALIKCNLK  193 (214)
Q Consensus       114 ~Y~iv~g~~~~~~~~~~~~~~~~~~~p~~~y~ati~v~p~~~~gs~~t~~~~s~~~~~p~~~~~~~~~~~v~~~~~~gL~  193 (214)
                      .+..++|                   |++.+.+..+++|.++++|.+++...+...   ..    ....++..+++...+
T Consensus        88 ~~~~~~G-------------------pF~~l~g~W~f~p~~~~~t~V~~~l~fef~---s~----l~~~~~~~~~~~~~~  141 (158)
T PRK10724         88 LMQLVDG-------------------PFKKLIGGWKFTPLSQEACRIEFHLDFEFT---NK----LIELAFGRVFKELAS  141 (158)
T ss_pred             EEEecCC-------------------ChhhccceEEEEECCCCCEEEEEEEEEEEc---hH----HHHHHHHHHHHHHHH
Confidence            9988886                   458999999999988677888888776542   22    222334445555555


Q ss_pred             HHHHHHhhhh
Q 028067          194 SLADVSEHLA  203 (214)
Q Consensus       194 ~L~~~le~~a  203 (214)
                      .|-+.+++.|
T Consensus       142 ~mv~AF~~Ra  151 (158)
T PRK10724        142 NMVQAFTVRA  151 (158)
T ss_pred             HHHHHHHHHH
Confidence            5555555433

>cd08893 SRPBCC_CalC_Aha1-like_GntR-HTH Putative hydrophobic ligand-binding SRPBCC domain of an uncharacterized subgroup of CalC- and Aha1-like proteins; some contain an N-terminal GntR family winged HTH DNA-binding domain

Probab=98.85  E-value=1.5e-07  Score=72.46  Aligned_cols=136  Identities=16%  Similarity=0.047  Sum_probs=84.0

Q ss_pred             eEEEEEeeeecCCHHHHHHHHhcCCCCCccCccceEEEEecCCCCCeEEEEEeeCCCCcceEEEEEEEEeCCCcEEEEEE
Q 028067           38 QCSSSLVKHIKAPVHLVWSLVRRFDQPQKYKPFVSRCIVQGDLQIGSVREVNVKSGLPATTSTERLELLDDEEHIFGMRI  117 (214)
Q Consensus        38 ~ve~sI~~~I~APae~VW~vi~Df~~l~~W~P~V~s~~veG~g~VGsvR~l~~~~G~p~~~v~ErL~~~D~~~~~~~Y~i  117 (214)
                      |++.++  .|+||+++||+++.|+..++.|.+..   ..+++..+|..-.+...+.. ...+.=+++++++ ++.+.|+.
T Consensus         1 ~~~~~~--~i~ap~e~Vw~~~td~~~~~~W~~~~---~~~~~~~~G~~~~~~~~~~~-~~~~~~~v~~~~~-~~~l~~~~   73 (136)
T cd08893           1 KFVYVT--YIRATPEKVWQALTDPEFTRQYWGGT---TVESDWKVGSAFEYRRGDDG-TVDVEGEVLESDP-PRRLVHTW   73 (136)
T ss_pred             CeEEEE--EecCCHHHHHHHHcCchhhhheeccc---ccccCCcCCCeEEEEeCCCc-ccccceEEEEecC-CCeEEEEE
Confidence            456677  99999999999999999999998752   12344446655555444311 1235567888887 57777776


Q ss_pred             EcCcccceeeeccccccccCCCcceeeEEEEEEEeecCCCcceEEEEEEEEeeCCCCCCHHHHHHHHHHHHHHHHHHHHH
Q 028067          118 VGGDHRLKIIWNFSNFISTSSSKLQNYSSIVTVHPEVIDGRPGTLVIESFVVDVPDGNTKDETCYFVEALIKCNLKSLAD  197 (214)
Q Consensus       118 v~g~~~~~~~~~~~~~~~~~~~p~~~y~ati~v~p~~~~gs~~t~~~~s~~~~~p~~~~~~~~~~~v~~~~~~gL~~L~~  197 (214)
                      ..+....             ..+......++.++|.+ +++.+++....    .+.+.   ...+.+..-+...|+.|++
T Consensus        74 ~~~~~~~-------------~~~~~~~~v~~~l~~~~-~~t~l~~~~~~----~~~~~---~~~~~~~~gw~~~l~~Lk~  132 (136)
T cd08893          74 RAVWDPE-------------MAAEPPSRVTFEIEPVG-DVVKLTVTHDG----FPPGS---PTLEGVSGGWPAILSSLKT  132 (136)
T ss_pred             ecCCCcc-------------cCCCCCEEEEEEEEecC-CcEEEEEEecC----CCCch---hHHHhhhcCHHHHHHHHHH
Confidence            5432110             01124677788888876 45533333321    22221   2334456667778999999


Q ss_pred             HHhh
Q 028067          198 VSEH  201 (214)
Q Consensus       198 ~le~  201 (214)
                      .+|+
T Consensus       133 ~~e~  136 (136)
T cd08893         133 LLET  136 (136)
T ss_pred             HhcC
Confidence            8874

SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain of a functionally uncharacterized subgroup of CalC- and Aha1-like proteins. This group shows similarity to the SRPBCC domains of Micromonospora echinospora CalC (a protein which confers resistance to enediynes) and human Aha1 (one of several co-chaperones which regulate the dimeric chaperone Hsp90), and belongs to the SRPBCC domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. Some proteins in this subgroup contain an N-terminal winged helix-turn-helix DNA-binding domain found in the GntR family of proteins which include bacterial transcriptional regulators and their putative homologs from eukaryota and archaea.

>cd08898 SRPBCC_CalC_Aha1-like_5 Putative hydrophobic ligand-binding SRPBCC domain of an uncharacterized subgroup of CalC- and Aha1-like proteins

Probab=98.82  E-value=1.4e-07  Score=73.47  Aligned_cols=143  Identities=16%  Similarity=0.111  Sum_probs=85.5

Q ss_pred             eEEEEEeeeecCCHHHHHHHHhcCCCCCccCccceEEEEe-cCCCCCeEEEEEeeCCCCcceEEEEEEEEeCCCcEEEEE
Q 028067           38 QCSSSLVKHIKAPVHLVWSLVRRFDQPQKYKPFVSRCIVQ-GDLQIGSVREVNVKSGLPATTSTERLELLDDEEHIFGMR  116 (214)
Q Consensus        38 ~ve~sI~~~I~APae~VW~vi~Df~~l~~W~P~V~s~~ve-G~g~VGsvR~l~~~~G~p~~~v~ErL~~~D~~~~~~~Y~  116 (214)
                      .++.++  +|+||+++||++++|+..++.|.+... +... |.+..|   .+...++. .....-+++++++ .+.+.|+
T Consensus         2 ~i~~~i--~i~a~~e~Vw~~~td~~~~~~W~~~~~-~~~~~~~~~~g---~~~~~~~~-~~~~~~~i~~~~p-~~~l~~~   73 (145)
T cd08898           2 RIERTI--LIDAPRERVWRALTDPEHFGQWFGVKL-GPFVVGEGATG---EITYPGYE-HGVFPVTVVEVDP-PRRFSFR   73 (145)
T ss_pred             eeEEEE--EecCCHHHHHHHhcChhhhhhcccccC-CCcccCCccee---EEecCCCC-ccceEEEEEEeCC-CcEEEEE
Confidence            578899  999999999999999999999998543 2221 222122   23333321 0135568888998 6888998


Q ss_pred             EEcCcccceeeeccccccccCCCcceeeEEEEEEEeecCCCcceEEEEEEEEeeCCCCCCHHHHHHHHHHHHHHHHHHHH
Q 028067          117 IVGGDHRLKIIWNFSNFISTSSSKLQNYSSIVTVHPEVIDGRPGTLVIESFVVDVPDGNTKDETCYFVEALIKCNLKSLA  196 (214)
Q Consensus       117 iv~g~~~~~~~~~~~~~~~~~~~p~~~y~ati~v~p~~~~gs~~t~~~~s~~~~~p~~~~~~~~~~~v~~~~~~gL~~L~  196 (214)
                      .........          .+..+......++++.+.+ +||.++++-..+. ..++.. .+.....+..-....|+.|+
T Consensus        74 ~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~-~gT~vt~~~~~~~-~~~~~~-~~~~~~~~~~gw~~~l~~L~  140 (145)
T cd08898          74 WHPPAIDPG----------EDYSAEPSTLVEFTLEPIA-GGTLLTVTESGFD-ALPAER-RAEAYRMNEGGWDEQLENLV  140 (145)
T ss_pred             ecCCCcccc----------cccCCCCceEEEEEEEecC-CcEEEEEEEcCCC-CCChHH-HHHHHHhhhhhHHHHHHHHH
Confidence            754320000          0000123456889999976 6776666543211 111111 11233455667778888888


Q ss_pred             HHHhh
Q 028067          197 DVSEH  201 (214)
Q Consensus       197 ~~le~  201 (214)
                      ++||.
T Consensus       141 ~~le~  145 (145)
T cd08898         141 AYVEA  145 (145)
T ss_pred             HHhcC
Confidence            88863

SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain of a functionally uncharacterized subgroup of CalC- and Aha1-like proteins. This group shows similarity to the SRPBCC domains of Micromonospora echinospora CalC (a protein which confers resistance to enediynes) and human Aha1 (one of several co-chaperones which regulate the dimeric chaperone Hsp90), and belongs to the SRPBCC domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands.

>cd08899 SRPBCC_CalC_Aha1-like_6 Putative hydrophobic ligand-binding SRPBCC domain of an uncharacterized subgroup of CalC- and Aha1-like proteins

Probab=98.81  E-value=7.2e-08  Score=78.02  Aligned_cols=129  Identities=17%  Similarity=0.135  Sum_probs=88.0

Q ss_pred             ceEEEEEeeeecCCHHHHHHHHhcCCCCCccCccceEEEEecCCCCCeEEEEEeeCCCCcceEEEEEEEEeCCCcEEEEE
Q 028067           37 HQCSSSLVKHIKAPVHLVWSLVRRFDQPQKYKPFVSRCIVQGDLQIGSVREVNVKSGLPATTSTERLELLDDEEHIFGMR  116 (214)
Q Consensus        37 ~~ve~sI~~~I~APae~VW~vi~Df~~l~~W~P~V~s~~veG~g~VGsvR~l~~~~G~p~~~v~ErL~~~D~~~~~~~Y~  116 (214)
                      ..+..++  +|+||+++||+++.|+.+++.|.+..     ..+..+|...++.+....+ .....+++++|+ ++.+.|+
T Consensus        11 ~~i~~~~--~i~Ap~e~Vw~altdp~~~~~W~~~~-----~~~~~~G~~~~~~~~~~~~-~~~~~~v~e~~p-~~~l~~~   81 (157)
T cd08899          11 ATLRFER--LLPAPIEDVWAALTDPERLARWFAPG-----TGDLRVGGRVEFVMDDEEG-PNATGTILACEP-PRLLAFT   81 (157)
T ss_pred             eEEEEEE--ecCCCHHHHHHHHcCHHHHHhhcCCC-----CCCcccCceEEEEecCCCC-CccceEEEEEcC-CcEEEEE
Confidence            4566666  89999999999999999999999832     2333466666665543111 346778889998 5788988


Q ss_pred             EEcCcccceeeeccccccccCCCcceeeEEEEEEEeecCCCcceEEEEEEEEeeCCCCCCHHHHHHHHHHHHHHHHHHHH
Q 028067          117 IVGGDHRLKIIWNFSNFISTSSSKLQNYSSIVTVHPEVIDGRPGTLVIESFVVDVPDGNTKDETCYFVEALIKCNLKSLA  196 (214)
Q Consensus       117 iv~g~~~~~~~~~~~~~~~~~~~p~~~y~ati~v~p~~~~gs~~t~~~~s~~~~~p~~~~~~~~~~~v~~~~~~gL~~L~  196 (214)
                      ...++                    .....+++|++.+ +||.+++.....    +..    .....+..-....|+.|+
T Consensus        82 ~~~~~--------------------~~~~~~~~l~~~~-~gT~v~~~~~~~----~~~----~~~~~~~~GW~~~L~~Lk  132 (157)
T cd08899          82 WGEGG--------------------GESEVRFELAPEG-DGTRLTLTHRLL----DER----FGAGAVGAGWHLCLDVLE  132 (157)
T ss_pred             ecCCC--------------------CCceEEEEEEEcC-CCEEEEEEEecc----Cch----hhhhhhcccHHHHHHHHH
Confidence            75432                    2345688888866 677555554322    222    233455666778899999


Q ss_pred             HHHhhhh
Q 028067          197 DVSEHLA  203 (214)
Q Consensus       197 ~~le~~a  203 (214)
                      +++|+..
T Consensus       133 ~~~e~~~  139 (157)
T cd08899         133 AALEGGP  139 (157)
T ss_pred             HHHcCCC
Confidence            9999854

SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain of a functionally uncharacterized subgroup of CalC- and Aha1-like proteins. This group shows similarity to the SRPBCC domains of Micromonospora echinospora CalC (a protein which confers resistance to enediynes) and human Aha1 (one of several co-chaperones which regulate the dimeric chaperone Hsp90), and belongs to the SRPBCC domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands.

>cd08894 SRPBCC_CalC_Aha1-like_1 Putative hydrophobic ligand-binding SRPBCC domain of an uncharacterized subgroup of CalC- and Aha1-like proteins

Probab=98.67  E-value=7.8e-07  Score=70.15  Aligned_cols=132  Identities=12%  Similarity=0.026  Sum_probs=81.0

Q ss_pred             EeeeecCCHHHHHHHHhcCCCCCccCc-c-ceEEEEecCCCCCeEEEEEee--CCCCcceEEEEEEEEeCCCcEEEEEEE
Q 028067           43 LVKHIKAPVHLVWSLVRRFDQPQKYKP-F-VSRCIVQGDLQIGSVREVNVK--SGLPATTSTERLELLDDEEHIFGMRIV  118 (214)
Q Consensus        43 I~~~I~APae~VW~vi~Df~~l~~W~P-~-V~s~~veG~g~VGsvR~l~~~--~G~p~~~v~ErL~~~D~~~~~~~Y~iv  118 (214)
                      +++.|+||+++||.++.|...+..|.+ . ......+.+..+|..-.+.+.  +|.. ....=++++++| ++++.|+..
T Consensus         4 ~~r~i~ap~e~Vw~a~t~p~~l~~W~~p~~~~~~~~~~d~~~GG~~~~~~~~~~g~~-~~~~g~v~e~~p-~~~l~~t~~   81 (139)
T cd08894           4 TTRVIDAPRDLVFAAWTDPEHLAQWWGPEGFTNTTHEFDLRPGGRWRFVMHGPDGTD-YPNRIVFLEIEP-PERIVYDHG   81 (139)
T ss_pred             EEEEeCCCHHHHHHHhCCHHHHhhccCcCCCcceEEEEEecCCCEEEEEEECCCCCE-ecceEEEEEEcC-CCEEEEEec
Confidence            345889999999999999999999873 2 222222333345555444342  3431 123457889998 588899874


Q ss_pred             cCcccceeeeccccccccCCCcceeeEEEEEEEeecCCCcceEEEEEEEEeeCCCCCCHHHHHHHHHHHHHHHHHHHHHH
Q 028067          119 GGDHRLKIIWNFSNFISTSSSKLQNYSSIVTVHPEVIDGRPGTLVIESFVVDVPDGNTKDETCYFVEALIKCNLKSLADV  198 (214)
Q Consensus       119 ~g~~~~~~~~~~~~~~~~~~~p~~~y~ati~v~p~~~~gs~~t~~~~s~~~~~p~~~~~~~~~~~v~~~~~~gL~~L~~~  198 (214)
                      .++                    .....+++++|.+ +||.++++..   +. +.....+.+...+.+-....|+.|++.
T Consensus        82 ~~~--------------------~~~~v~~~~~~~~-~gT~ltl~~~---~~-~~~~~~~~~~~~~~~Gw~~~l~~L~~~  136 (139)
T cd08894          82 SGP--------------------PRFRLTVTFEEQG-GKTRLTWRQV---FP-TAAERCEKIKFGAVEGNEQTLDRLAAY  136 (139)
T ss_pred             cCC--------------------CcEEEEEEEEECC-CCEEEEEEEE---cC-CHHHHHHHHHhCHHHHHHHHHHHHHHH
Confidence            320                    2356788999876 7776666542   21 111112223344566677888888888


Q ss_pred             Hhh
Q 028067          199 SEH  201 (214)
Q Consensus       199 le~  201 (214)
                      |++
T Consensus       137 l~~  139 (139)
T cd08894         137 LAR  139 (139)
T ss_pred             HhC
Confidence            764

SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain of a functionally uncharacterized subgroup of CalC- and Aha1-like proteins. This group shows similarity to the SRPBCC domains of Micromonospora echinospora CalC (a protein which confers resistance to enediynes) and human Aha1 (one of several co-chaperones which regulate the dimeric chaperone Hsp90), and belongs to the SRPBCC domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands.

>cd08900 SRPBCC_CalC_Aha1-like_7 Putative hydrophobic ligand-binding SRPBCC domain of an uncharacterized subgroup of CalC- and Aha1-like proteins

Probab=98.53  E-value=7e-06  Score=64.88  Aligned_cols=133  Identities=18%  Similarity=0.075  Sum_probs=79.1

Q ss_pred             EeeeecCCHHHHHHHHhcCCCCCccCcc-----ceEEEEecCCCCCeEEEEEe--eCCCCcceEEEEEEEEeCCCcEEEE
Q 028067           43 LVKHIKAPVHLVWSLVRRFDQPQKYKPF-----VSRCIVQGDLQIGSVREVNV--KSGLPATTSTERLELLDDEEHIFGM  115 (214)
Q Consensus        43 I~~~I~APae~VW~vi~Df~~l~~W~P~-----V~s~~veG~g~VGsvR~l~~--~~G~p~~~v~ErL~~~D~~~~~~~Y  115 (214)
                      +++.++||+++||+++.|...+..|...     +..+.+  +..+|..-.+.+  .+|.. ....=+++++|+ .+++.|
T Consensus         4 i~r~~~ap~e~Vw~a~tdp~~l~~W~~~~~~~~~~~~~~--d~~~Gg~~~~~~~~~~g~~-~~~~g~~~~~~p-~~~l~~   79 (143)
T cd08900           4 LERTYPAPPERVFAAWSDPAARARWFVPSPDWTVLEDEF--DFRVGGREVSRGGPKGGPE-ITVEARYHDIVP-DERIVY   79 (143)
T ss_pred             EEEEeCCCHHHHHHHhcCHHHHHhcCCCCCCCceeeeEE--ecCCCCEEEEEEECCCCCE-EeeeEEEEEecC-CceEEE
Confidence            4457899999999999999999999842     233333  333454433333  24431 234557888998 577888


Q ss_pred             EEEcCcccceeeeccccccccCCCcceeeEEEEEEEeecCCCcceEEEEEEEEeeCCCCCCHHHHHHHHHHHHHHHHHHH
Q 028067          116 RIVGGDHRLKIIWNFSNFISTSSSKLQNYSSIVTVHPEVIDGRPGTLVIESFVVDVPDGNTKDETCYFVEALIKCNLKSL  195 (214)
Q Consensus       116 ~iv~g~~~~~~~~~~~~~~~~~~~p~~~y~ati~v~p~~~~gs~~t~~~~s~~~~~p~~~~~~~~~~~v~~~~~~gL~~L  195 (214)
                      +.......               .|......++.+.+.+ +||.+++......  .+..   +.. ..+..=....|+.|
T Consensus        80 t~~~~~~~---------------~~~~~s~v~~~l~~~~-~gT~l~~~~~~~~--~~~~---~~~-~~~~~GW~~~l~~L  137 (143)
T cd08900          80 TYTMHIGG---------------TLLSASLATVEFAPEG-GGTRLTLTEQGAF--LDGD---DDP-AGREQGTAALLDNL  137 (143)
T ss_pred             EEeeccCC---------------ccccceEEEEEEEECC-CCEEEEEEEEEec--cccc---chh-hhHHHHHHHHHHHH
Confidence            76321110               1122345788898876 6775555543321  1111   112 33345566778999


Q ss_pred             HHHHhh
Q 028067          196 ADVSEH  201 (214)
Q Consensus       196 ~~~le~  201 (214)
                      ++.|++
T Consensus       138 ~~~l~~  143 (143)
T cd08900         138 AAELER  143 (143)
T ss_pred             HHHHhC
Confidence            988874

SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain of a functionally uncharacterized subgroup of CalC- and Aha1-like proteins. This group shows similarity to the SRPBCC domains of Micromonospora echinospora CalC (a protein which confers resistance to enediynes) and human Aha1 (one of several co-chaperones which regulate the dimeric chaperone Hsp90), and belongs to the SRPBCC domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands.

>cd08891 SRPBCC_CalC Ligand-binding SRPBCC domain of Micromonospora echinospora CalC and related proteins

Probab=98.51  E-value=6.1e-06  Score=65.75  Aligned_cols=140  Identities=11%  Similarity=-0.001  Sum_probs=79.4

Q ss_pred             EEEEEeeeecCCHHHHHHHHhcCCCCCccCc-c-------ceEEEEecCCCCCeEEEEEeeCCCCcceEEEEEEEEeCCC
Q 028067           39 CSSSLVKHIKAPVHLVWSLVRRFDQPQKYKP-F-------VSRCIVQGDLQIGSVREVNVKSGLPATTSTERLELLDDEE  110 (214)
Q Consensus        39 ve~sI~~~I~APae~VW~vi~Df~~l~~W~P-~-------V~s~~veG~g~VGsvR~l~~~~G~p~~~v~ErL~~~D~~~  110 (214)
                      ++.++  .|+||+++||++++|  .+..|.+ .       ...|+++-  .+|....+...+|.  ....=++.+++| .
T Consensus         2 ~~~~~--~i~Ap~e~Vw~a~t~--~l~~W~~p~~~~~~~~~~~~~~d~--~~GG~~~~~~~~g~--~~~~g~v~~v~p-~   72 (149)
T cd08891           2 VRKSV--TVPAPPERAFEVFTE--GFGAWWPPEYHFVFSPGAEVVFEP--RAGGRWYEIGEDGT--ECEWGTVLAWEP-P   72 (149)
T ss_pred             eEEEE--EecCCHHHHHHHHHh--chhhccCCCcccccCCCccEEEcc--cCCcEEEEecCCCc--EeceEEEEEEcC-C
Confidence            56677  999999999999999  4778864 2       13444431  23333333333453  223457888998 5


Q ss_pred             cEEEEEEEcCcccceeeeccccccccCCCcceeeEEEEEEEeecCCCcceEEEEEEEEeeCCCCCCHHHHHHHHHHHHHH
Q 028067          111 HIFGMRIVGGDHRLKIIWNFSNFISTSSSKLQNYSSIVTVHPEVIDGRPGTLVIESFVVDVPDGNTKDETCYFVEALIKC  190 (214)
Q Consensus       111 ~~~~Y~iv~g~~~~~~~~~~~~~~~~~~~p~~~y~ati~v~p~~~~gs~~t~~~~s~~~~~p~~~~~~~~~~~v~~~~~~  190 (214)
                      +++.|+-.-+.. .            .+.+-..-..++.++|.++++|.++++-..... .+++..+......+..=...
T Consensus        73 ~~l~~tw~~~~~-~------------~~~~~~~t~vt~~l~~~~~~gT~ltl~~~~~~~-~~~~~~~~~~~~~~~~GW~~  138 (149)
T cd08891          73 SRLVFTWQINAD-W------------RPDPDKASEVEVRFEAVGAEGTRVELEHRGFER-HGDGWEAAAMRMGYDGGWPL  138 (149)
T ss_pred             CEEEEEeccCCC-c------------CcCCCCceEEEEEEEECCCCCeEEEEEEecccc-cCcchhhHHHHhcccCcHHH
Confidence            778887642110 0            001101236788888875467766666543321 11111222233334555666


Q ss_pred             HHHHHHHHHhh
Q 028067          191 NLKSLADVSEH  201 (214)
Q Consensus       191 gL~~L~~~le~  201 (214)
                      .|+.|++.|||
T Consensus       139 ~L~~L~~~l~~  149 (149)
T cd08891         139 LLERYAAAAEK  149 (149)
T ss_pred             HHHHHHHHhcC
Confidence            78999998875

This subfamily includes Micromonospora echinospora CalC (MeCalC) and related proteins. These proteins belong to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins which bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. MeCalC confers resistance to the enediyne, calicheamicin gamma 1 (CLM). Enediyne antibiotics are antitumor agents. Enediynes have an in vitro and in vivo role as DNA damaging agents; they consist of a DNA recognition unit (e.g., aryltetrasaccharide of CLM), an activating component (e.g., methyl trisulfide of CLM), which promotes cycloaromatization, and the enediyne warhead which cycloaromatizes to a reactive diradical species, resulting in oxidative strand cleavage of the targeted DNA sequence. MeCalC confers resistance to CLM by a self sacrificing mechanism: the transient enediyne diradical speci

>COG3427 Carbon monoxide dehydrogenase subunit G, CoxG [Energy production and conversion]

Probab=98.50  E-value=1.3e-06  Score=71.48  Aligned_cols=105  Identities=18%  Similarity=0.268  Sum_probs=68.4

Q ss_pred             EEEEEeeeecCCHHHHHHHHhcCCCCCccCccceEEEEecCCCCCeEEEEEeeCCCCcc--eEEEEEEEEeCCCcEEEEE
Q 028067           39 CSSSLVKHIKAPVHLVWSLVRRFDQPQKYKPFVSRCIVQGDLQIGSVREVNVKSGLPAT--TSTERLELLDDEEHIFGMR  116 (214)
Q Consensus        39 ve~sI~~~I~APae~VW~vi~Df~~l~~W~P~V~s~~veG~g~VGsvR~l~~~~G~p~~--~v~ErL~~~D~~~~~~~Y~  116 (214)
                      ++.+.  .|++|+++||+.|.|+..+..-.|.|++++.+|+.-.+   .+.+.-|.-..  .-+=++..+|+..++++-+
T Consensus         3 ~~G~f--~V~~p~e~Vw~~L~dpe~~a~ciPG~qs~e~~g~e~~~---~v~l~ig~l~~~~~g~~~~~~v~~~~~~~~i~   77 (146)
T COG3427           3 YEGTF--RVAAPPEAVWEFLNDPEQVAACIPGVQSVETNGDEYTA---KVKLKIGPLKGTFSGRVRFVNVDEPPRSITIN   77 (146)
T ss_pred             ccceE--EecCCHHHHHHHhcCHHHHHhhcCCcceeeecCCeEEE---EEEEeecceeEEEEEEEEEccccCCCcEEEEE
Confidence            45566  89999999999999999999999999999887752111   12222221001  2334555656667766655


Q ss_pred             EEcCcccceeeeccccccccCCCcceeeEEEEEEEeecCCCcceEEEEE
Q 028067          117 IVGGDHRLKIIWNFSNFISTSSSKLQNYSSIVTVHPEVIDGRPGTLVIE  165 (214)
Q Consensus       117 iv~g~~~~~~~~~~~~~~~~~~~p~~~y~ati~v~p~~~~gs~~t~~~~  165 (214)
                      .-+|..                --.-+..+.+.|+|.+ ++++++|...
T Consensus        78 g~G~~~----------------~g~~~~~~~v~l~~~g-~gt~v~w~~~  109 (146)
T COG3427          78 GSGGGA----------------AGFADGTVDVQLEPSG-EGTRVNWFAD  109 (146)
T ss_pred             eecccc----------------cceeeeeeEEEEEEcC-CCcEEEEEEE
Confidence            544211                1236888999999988 4465555543

>cd08897 SRPBCC_CalC_Aha1-like_4 Putative hydrophobic ligand-binding SRPBCC domain of an uncharacterized subgroup of CalC- and Aha1-like proteins

Probab=98.48  E-value=6.7e-06  Score=64.30  Aligned_cols=126  Identities=14%  Similarity=0.150  Sum_probs=77.9

Q ss_pred             EEEEEeeeecCCHHHHHHHHhcCCCCCccCccceE---EEEecCCCCCeEEEEEe--eCCCCcceEEEEEEEEeCCCcEE
Q 028067           39 CSSSLVKHIKAPVHLVWSLVRRFDQPQKYKPFVSR---CIVQGDLQIGSVREVNV--KSGLPATTSTERLELLDDEEHIF  113 (214)
Q Consensus        39 ve~sI~~~I~APae~VW~vi~Df~~l~~W~P~V~s---~~veG~g~VGsvR~l~~--~~G~p~~~v~ErL~~~D~~~~~~  113 (214)
                      +.-++  .|+||+++||++++|...+..|.+....   ...+.+..+|..-.+.+  .+|.....+.=++.++++ .+++
T Consensus         2 ~~~~~--~~~ap~e~Vw~a~td~e~~~~W~~~~~~~~~~~~~~d~~~GG~~~~~~~~~~g~~~~~~~g~~~ei~p-~~~l   78 (133)
T cd08897           2 ITVET--TVDAPIEKVWEAWTTPEHITKWNFASDDWHCPSAENDLRVGGKFSYRMEAKDGSMGFDFEGTYTEVEP-HKLI   78 (133)
T ss_pred             EEEEE--EeCCCHHHHHHHhCCHHHHhhCCCCCCCcccceeeecCCcCCEEEEEEEcCCCCcccccceEEEEECC-CCEE
Confidence            44555  8999999999999999999999643211   11233444565544443  233211134567788998 5889


Q ss_pred             EEEEEcCcccceeeeccccccccCCCcceeeEEEEEEEeecCCCcceEEEEEEEEeeCCCCCCHHHHHHHHHHHHHHHHH
Q 028067          114 GMRIVGGDHRLKIIWNFSNFISTSSSKLQNYSSIVTVHPEVIDGRPGTLVIESFVVDVPDGNTKDETCYFVEALIKCNLK  193 (214)
Q Consensus       114 ~Y~iv~g~~~~~~~~~~~~~~~~~~~p~~~y~ati~v~p~~~~gs~~t~~~~s~~~~~p~~~~~~~~~~~v~~~~~~gL~  193 (214)
                      .|+..+                       ....++.+.|.+ +||.++++     .+..+..    ....+..=....|+
T Consensus        79 ~~~~~~-----------------------~~~v~~~l~~~~-~gT~l~l~-----~~~~~~~----~~~~~~~GW~~~l~  125 (133)
T cd08897          79 EYTMED-----------------------GREVEVEFTEEG-DGTKVVET-----FDAENEN----PVEMQRQGWQAILD  125 (133)
T ss_pred             EEEcCC-----------------------CCEEEEEEEECC-CCEEEEEE-----ECCCCCC----cHHHHHHHHHHHHH
Confidence            998632                       124688999876 77755543     2221111    12233445577888


Q ss_pred             HHHHHHh
Q 028067          194 SLADVSE  200 (214)
Q Consensus       194 ~L~~~le  200 (214)
                      .|+++||
T Consensus       126 ~L~~~le  132 (133)
T cd08897         126 NFKKYVE  132 (133)
T ss_pred             HHHHHhh
Confidence            9988886

SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain of a functionally uncharacterized subgroup of CalC- and Aha1-like proteins. This group shows similarity to the SRPBCC domains of Micromonospora echinospora CalC (a protein which confers resistance to enediynes) and human Aha1 (one of several co-chaperones which regulate the dimeric chaperone Hsp90), and belongs to the SRPBCC domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands.

>cd07826 SRPBCC_CalC_Aha1-like_9 Putative hydrophobic ligand-binding SRPBCC domain of an uncharacterized subgroup of CalC- and Aha1-like proteins

Probab=98.47  E-value=7.5e-06  Score=65.04  Aligned_cols=135  Identities=9%  Similarity=-0.041  Sum_probs=80.8

Q ss_pred             EEeeeecCCHHHHHHHHhcCCCCCccCccc-eEE-EEecCCCCCeEEEEEee--CCCCcceEEEEEEEEeCCCcEEEEEE
Q 028067           42 SLVKHIKAPVHLVWSLVRRFDQPQKYKPFV-SRC-IVQGDLQIGSVREVNVK--SGLPATTSTERLELLDDEEHIFGMRI  117 (214)
Q Consensus        42 sI~~~I~APae~VW~vi~Df~~l~~W~P~V-~s~-~veG~g~VGsvR~l~~~--~G~p~~~v~ErL~~~D~~~~~~~Y~i  117 (214)
                      +++++++||+++||+++.|...+..|...- ..+ ..+.+..+|..-.+.+.  +|.. ..+.=++++++| .+++.|+.
T Consensus         3 ~i~r~~~ap~e~Vw~a~Tdpe~l~~W~~p~~~~~~~~~~d~r~GG~~~~~~~~~~g~~-~~~~g~~~ei~p-~~~l~~t~   80 (142)
T cd07826           3 VITREFDAPRELVFRAHTDPELVKRWWGPRGLTMTVCECDIRVGGSYRYVHRAPDGEE-MGFHGVYHEVTP-PERIVQTE   80 (142)
T ss_pred             EEEEEECCCHHHHHHHhCCHHHHhhccCCCCCcceEEEEeccCCCEEEEEEECCCCCE-ecceEEEEEEcC-CCEEEEEe
Confidence            345588999999999999999999998432 111 12344445655555443  3321 235567888998 57777764


Q ss_pred             EcCcccceeeeccccccccCCCcceeeEEEEEEEeecCCCcceEEEEEEEEeeCCCCCCHHHHHHHHHHHHHHHHHHHHH
Q 028067          118 VGGDHRLKIIWNFSNFISTSSSKLQNYSSIVTVHPEVIDGRPGTLVIESFVVDVPDGNTKDETCYFVEALIKCNLKSLAD  197 (214)
Q Consensus       118 v~g~~~~~~~~~~~~~~~~~~~p~~~y~ati~v~p~~~~gs~~t~~~~s~~~~~p~~~~~~~~~~~v~~~~~~gL~~L~~  197 (214)
                      .-.+.                 |-.....++.+.+.+ +||..+++..   +. .....++.....+..=....|+.|++
T Consensus        81 ~~~~~-----------------~~~~s~v~~~l~~~~-~gT~l~l~~~---~~-~~~~~~~~~~~~~~~Gw~~~l~~L~~  138 (142)
T cd07826          81 EFEGL-----------------PDGVALETVTFTELG-GRTRLTATSR---YP-SKEARDGVLASGMEEGMEESYDRLDE  138 (142)
T ss_pred             EecCC-----------------CCCceEEEEEEEECC-CCEEEEEEEE---eC-CHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence            32110                 113567788999876 7776665422   21 11111112334556667777888887


Q ss_pred             HHh
Q 028067          198 VSE  200 (214)
Q Consensus       198 ~le  200 (214)
                      .|+
T Consensus       139 ~l~  141 (142)
T cd07826         139 LLA  141 (142)
T ss_pred             HHh
Confidence            764

SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain of a functionally uncharacterized subgroup of CalC- and Aha1-like proteins. This group shows similarity to the SRPBCC domains of Micromonospora echinospora CalC (a protein which confers resistance to enediynes) and human Aha1 (one of several co-chaperones which regulate the dimeric chaperone Hsp90), and belongs to the SRPBCC domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands.

>cd08896 SRPBCC_CalC_Aha1-like_3 Putative hydrophobic ligand-binding SRPBCC domain of an uncharacterized subgroup of CalC- and Aha1-like proteins

Probab=98.47  E-value=9.5e-06  Score=64.43  Aligned_cols=136  Identities=15%  Similarity=0.068  Sum_probs=77.1

Q ss_pred             EeeeecCCHHHHHHHHhcCCCCCccCc-c---ceEEEEecCCCCCeEEEEEe--eCCCCcceEEEEEEEEeCCCcEEEEE
Q 028067           43 LVKHIKAPVHLVWSLVRRFDQPQKYKP-F---VSRCIVQGDLQIGSVREVNV--KSGLPATTSTERLELLDDEEHIFGMR  116 (214)
Q Consensus        43 I~~~I~APae~VW~vi~Df~~l~~W~P-~---V~s~~veG~g~VGsvR~l~~--~~G~p~~~v~ErL~~~D~~~~~~~Y~  116 (214)
                      +++.|+||+++||+++.+...+..|.+ .   +..+.+  +..+|..-++.+  .+|.. ....=++.++|| .+++.|+
T Consensus         4 i~r~i~a~~e~Vw~a~t~pe~~~~W~~p~~~~~~~~~~--d~~~GG~~~~~~~~~~g~~-~~~~g~v~~i~p-~~~l~~t   79 (146)
T cd08896           4 LSRTIDAPRELVWRAWTEPELLKQWFCPKPWTTEVAEL--DLRPGGAFRTVMRGPDGEE-FPNPGCFLEVVP-GERLVFT   79 (146)
T ss_pred             EEEEeCCCHHHHHHHcCCHHHHhccCCCCCccceEEEE--EeecCcEEEEEEECCCCCE-ecceEEEEEEeC-CCEEEEE
Confidence            345889999999999999999999974 2   223333  323444444443  23431 234567889999 5778887


Q ss_pred             EEcCcccceeeeccccccccCCCcceeeEEEEEEEeecCCCcceEEEEEEEEeeCCCCCCHHHHHHHHHHHHHHHHHHHH
Q 028067          117 IVGGDHRLKIIWNFSNFISTSSSKLQNYSSIVTVHPEVIDGRPGTLVIESFVVDVPDGNTKDETCYFVEALIKCNLKSLA  196 (214)
Q Consensus       117 iv~g~~~~~~~~~~~~~~~~~~~p~~~y~ati~v~p~~~~gs~~t~~~~s~~~~~p~~~~~~~~~~~v~~~~~~gL~~L~  196 (214)
                      -.-.+...           +...|  .-..++++++.+ +||.++++...    .+....+.....-+..=....|+.|+
T Consensus        80 ~~~~~~~~-----------~~~~~--~~~v~~~~~~~~-~gT~Ltl~~~~----~~~~~~~~~~~~~~~~GW~~~l~~L~  141 (146)
T cd08896          80 DALTPGWR-----------PAEKP--FMTAIITFEDEG-GGTRYTARARH----WTEADRKQHEEMGFHDGWGTAADQLA  141 (146)
T ss_pred             EeecCCcC-----------CCCCC--cEEEEEEEEecC-CcEEEEEEEEe----CCHHHHHHHHHcCHHHHHHHHHHHHH
Confidence            42211100           00111  145688899876 77766654321    11111111111123455777888888


Q ss_pred             HHHh
Q 028067          197 DVSE  200 (214)
Q Consensus       197 ~~le  200 (214)
                      ++++
T Consensus       142 ~~l~  145 (146)
T cd08896         142 ALAE  145 (146)
T ss_pred             HHHh
Confidence            8876

SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain of a functionally uncharacterized subgroup of CalC- and Aha1-like proteins. This group shows similarity to the SRPBCC domains of Micromonospora echinospora CalC (a protein which confers resistance to enediynes) and human Aha1 (one of several co-chaperones which regulate the dimeric chaperone Hsp90), and belongs to the SRPBCC domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands.

>PF06240 COXG: Carbon monoxide dehydrogenase subunit G (CoxG); InterPro: IPR010419 The CO dehydrogenase structural genes coxMSL are flanked by nine accessory genes arranged as the cox gene cluster

Probab=98.39  E-value=6.4e-06  Score=65.64  Aligned_cols=134  Identities=18%  Similarity=0.122  Sum_probs=75.8

Q ss_pred             eecCCHHHHHHHHhcCCCCCccCccceEEEEecCCCCCeEEEEEeeCCC-Cc-ceEEEEEEEEeCCCcEEEEEEEcCccc
Q 028067           46 HIKAPVHLVWSLVRRFDQPQKYKPFVSRCIVQGDLQIGSVREVNVKSGL-PA-TTSTERLELLDDEEHIFGMRIVGGDHR  123 (214)
Q Consensus        46 ~I~APae~VW~vi~Df~~l~~W~P~V~s~~veG~g~VGsvR~l~~~~G~-p~-~~v~ErL~~~D~~~~~~~Y~iv~g~~~  123 (214)
                      +|++|+++||++|.|+..+..-.|.+.+.+..| +.-  .-.++++-|. .. -..+=++.+.|+.++. ..++...+..
T Consensus         4 ~v~a~~~~vw~~l~D~~~l~~ciPG~~~~e~~~-~~~--~~~~~v~vG~i~~~~~g~~~~~~~~~~~~~-~~~~~g~g~~   79 (140)
T PF06240_consen    4 EVPAPPEKVWAFLSDPENLARCIPGVESIEKVG-DEY--KGKVKVKVGPIKGTFDGEVRITEIDPPESY-TLEFEGRGRG   79 (140)
T ss_dssp             EECS-HHHHHHHHT-HHHHHHHSTTEEEEEEEC-TEE--EEEEEEESCCCEEEEEEEEEEEEEETTTEE-EEEEEEEECT
T ss_pred             EecCCHHHHHHHhcCHHHHHhhCCCcEEeeecC-cEE--EEEEEEEeccEEEEEEEEEEEEEcCCCcce-EeeeeccCCc
Confidence            899999999999999999999999999998655 310  0112332231 00 1244567778886554 3555443332


Q ss_pred             ceeeeccccccccCCCcceeeEEEEEEEeecCCCcceEEEEEEEEeeCCCCCCHHHHHHHHHHHHHHHHHHHHHHH
Q 028067          124 LKIIWNFSNFISTSSSKLQNYSSIVTVHPEVIDGRPGTLVIESFVVDVPDGNTKDETCYFVEALIKCNLKSLADVS  199 (214)
Q Consensus       124 ~~~~~~~~~~~~~~~~p~~~y~ati~v~p~~~~gs~~t~~~~s~~~~~p~~~~~~~~~~~v~~~~~~gL~~L~~~l  199 (214)
                      ..                .+..+.+++...+++++.++|..+..............+....+.+++.-.+.|++.+
T Consensus        80 ~~----------------~~~~~~~~~~~~~~~~T~v~~~~~~~~~G~la~~g~~~i~~~~~~l~~~f~~~l~~~l  139 (140)
T PF06240_consen   80 GG----------------SSASANITLSLEDDGGTRVTWSADVEVGGPLASLGQRLIESVARRLIEQFFENLERKL  139 (140)
T ss_dssp             CC----------------EEEEEEEEEEECCCTCEEEEEEEEEEEECHHHHC-HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             cc----------------eEEEEEEEEEcCCCCCcEEEEEEEEEEccCHHHhhHHHHHHHHHHHHHHHHHHHHHhc
Confidence            21                3445566666555445666666554432222223334555566666666666666554

The cox genes are specifically and coordinately transcribed under chemolithoautotrophic conditions in the presence of CO as carbon and energy source [].; PDB: 2NS9_A 2PCS_A.

>cd08895 SRPBCC_CalC_Aha1-like_2 Putative hydrophobic ligand-binding SRPBCC domain of an uncharacterized subgroup of CalC- and Aha1-like proteins

Probab=98.36  E-value=4.2e-05  Score=60.69  Aligned_cols=131  Identities=21%  Similarity=0.110  Sum_probs=76.8

Q ss_pred             EeeeecCCHHHHHHHHhcCCCCCccCc-cceEEE-EecCCCCCeEEEEEe--eC-------CCCcceEEEEEEEEeCCCc
Q 028067           43 LVKHIKAPVHLVWSLVRRFDQPQKYKP-FVSRCI-VQGDLQIGSVREVNV--KS-------GLPATTSTERLELLDDEEH  111 (214)
Q Consensus        43 I~~~I~APae~VW~vi~Df~~l~~W~P-~V~s~~-veG~g~VGsvR~l~~--~~-------G~p~~~v~ErL~~~D~~~~  111 (214)
                      +++.|+||+++||+++.|...+..|.+ .--.+. .+.+..+|..-.+.+  .+       |. .....=+++++++ ++
T Consensus         4 ~~r~i~ap~e~Vw~a~td~~~~~~W~~p~~~~~~~~~~d~~~GG~~~~~~~~~~~~~g~~~g~-~~~~~g~v~~v~p-~~   81 (146)
T cd08895           4 LHRVIAAPPERVYRAFLDPDALAKWLPPDGMTGTVHEFDAREGGGFRMSLTYFDPSVGKTTGN-TDVFGGRFLELVP-NE   81 (146)
T ss_pred             EEEEECCCHHHHHHHHcCHHHHhhcCCCCCeEeEEEEEecccCCeEEEEEEcCCccccccCCc-EeeeEEEEEEEcC-CC
Confidence            345889999999999999999999985 211221 223333444433322  23       21 1134456888998 57


Q ss_pred             EEEEEEEcCcccceeeeccccccccCCCcceeeEEEEEEEeecCCCcceEEEEEEEEeeCCCCCCHHHHHHHHHHHHHHH
Q 028067          112 IFGMRIVGGDHRLKIIWNFSNFISTSSSKLQNYSSIVTVHPEVIDGRPGTLVIESFVVDVPDGNTKDETCYFVEALIKCN  191 (214)
Q Consensus       112 ~~~Y~iv~g~~~~~~~~~~~~~~~~~~~p~~~y~ati~v~p~~~~gs~~t~~~~s~~~~~p~~~~~~~~~~~v~~~~~~g  191 (214)
                      ++.|+..-.+..               .| .....++.+.+.+ ++|.+++...    ..++..    ....+..=....
T Consensus        82 ~i~~~~~~~~~~---------------~~-~~~~v~~~~~~~~-~~T~lt~~~~----~~~~~~----~~~~~~~GW~~~  136 (146)
T cd08895          82 RIVYTDVFDDPS---------------LS-GEMTMTWTLSPVS-GGTDVTIVQS----GIPDGI----PPEDCELGWQES  136 (146)
T ss_pred             EEEEEEEecCCC---------------CC-ceEEEEEEEEecC-CCEEEEEEEe----CCCchh----hhhHHHHHHHHH
Confidence            788875322111               11 2447888888876 6775555543    123321    123445556667


Q ss_pred             HHHHHHHHh
Q 028067          192 LKSLADVSE  200 (214)
Q Consensus       192 L~~L~~~le  200 (214)
                      |+.|+++++
T Consensus       137 l~~L~~~le  145 (146)
T cd08895         137 LANLAALVE  145 (146)
T ss_pred             HHHHHHHhc
Confidence            888888776

SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain of a functionally uncharacterized subgroup of CalC- and Aha1-like proteins. This group shows similarity to the SRPBCC domains of Micromonospora echinospora CalC (a protein which confers resistance to enediynes) and human Aha1 (one of several co-chaperones which regulate the dimeric chaperone Hsp90), and belongs to the SRPBCC domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands.

>cd08901 SRPBCC_CalC_Aha1-like_8 Putative hydrophobic ligand-binding SRPBCC domain of an uncharacterized subgroup of CalC- and Aha1-like proteins

Probab=98.34  E-value=1.6e-05  Score=62.65  Aligned_cols=129  Identities=11%  Similarity=-0.036  Sum_probs=77.8

Q ss_pred             EEEEEeeeecCCHHHHHHHHhcCCCCCccCccceEEEEecCCCCCeEEEEEeeCCCCcceEEEEEEEEeCCCcEEEEEEE
Q 028067           39 CSSSLVKHIKAPVHLVWSLVRRFDQPQKYKPFVSRCIVQGDLQIGSVREVNVKSGLPATTSTERLELLDDEEHIFGMRIV  118 (214)
Q Consensus        39 ve~sI~~~I~APae~VW~vi~Df~~l~~W~P~V~s~~veG~g~VGsvR~l~~~~G~p~~~v~ErL~~~D~~~~~~~Y~iv  118 (214)
                      +..++  .|+||+++||+++++...+..|.+.-.+.++    .+|....+.+....+  .+.=++.+++| .+.+.|+..
T Consensus         2 ~~~~~--~i~ap~e~Vw~a~t~p~~l~~W~~~~~~~~~----~~Gg~~~~~~~~~~~--~~~g~~~~~~p-~~~l~~~w~   72 (136)
T cd08901           2 AKTAM--LIRRPVAEVFEAFVDPEITTKFWFTGSSGRL----EEGKTVTWDWEMYGA--SVPVNVLEIEP-NKRIVIEWG   72 (136)
T ss_pred             eeEEE--EecCCHHHHHHHhcCHHHhccccccCCCccc----cCCCEEEEEEEccCC--ceEEEEEEEcC-CCEEEEEec
Confidence            56778  9999999999999999999998543222222    244433343332211  23446788988 578888764


Q ss_pred             cCcccceeeeccccccccCCCcceeeEEEEEEEeecCCCcceEEEEEEEEeeCCCCCCHHHHH--HHHHHHHHHHHHHHH
Q 028067          119 GGDHRLKIIWNFSNFISTSSSKLQNYSSIVTVHPEVIDGRPGTLVIESFVVDVPDGNTKDETC--YFVEALIKCNLKSLA  196 (214)
Q Consensus       119 ~g~~~~~~~~~~~~~~~~~~~p~~~y~ati~v~p~~~~gs~~t~~~~s~~~~~p~~~~~~~~~--~~v~~~~~~gL~~L~  196 (214)
                      .++                    ..-..++++.+.++++|.++++..    ..|.... +...  ..+..=....|+.|+
T Consensus        73 ~~~--------------------~~s~v~~~l~~~~~ggT~ltl~~~----~~~~~~~-~~~~~~~~~~~GW~~~L~~L~  127 (136)
T cd08901          73 DPG--------------------EPTTVEWTFEELDDGRTFVTITES----GFPGTDD-EGLKQALGSTEGWTLVLAGLK  127 (136)
T ss_pred             CCC--------------------CCEEEEEEEEECCCCcEEEEEEEC----CCCCCcH-HHHHHHhcCCCCHHHHHHHHH
Confidence            321                    124468888887646676555532    2233221 1111  122344566788999


Q ss_pred             HHHhh
Q 028067          197 DVSEH  201 (214)
Q Consensus       197 ~~le~  201 (214)
                      +.+|+
T Consensus       128 ~~le~  132 (136)
T cd08901         128 AYLEH  132 (136)
T ss_pred             HHHhc
Confidence            88876

SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain of a functionally uncharacterized subgroup of CalC- and Aha1-like proteins. This group shows similarity to the SRPBCC domains of Micromonospora echinospora CalC (a protein which confers resistance to enediynes) and human Aha1 (one of several co-chaperones which regulate the dimeric chaperone Hsp90), and belongs to the SRPBCC domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands.

>PF08327 AHSA1: Activator of Hsp90 ATPase homolog 1-like protein; InterPro: IPR013538 This family includes eukaryotic, prokaryotic and archaeal proteins that bear similarity to a C-terminal region of human activator of 90 kDa heat shock protein ATPase homologue 1 (AHSA1/p38, O95433 from SWISSPROT)

Probab=98.31  E-value=2.3e-05  Score=59.37  Aligned_cols=124  Identities=16%  Similarity=0.056  Sum_probs=75.2

Q ss_pred             cCCHHHHHHHHhcCCCCCccCccceEEEEecCCCCCeEEEEEeeCCCCcceEEEEEEEEeCCCcEEEEEEEcCcccceee
Q 028067           48 KAPVHLVWSLVRRFDQPQKYKPFVSRCIVQGDLQIGSVREVNVKSGLPATTSTERLELLDDEEHIFGMRIVGGDHRLKII  127 (214)
Q Consensus        48 ~APae~VW~vi~Df~~l~~W~P~V~s~~veG~g~VGsvR~l~~~~G~p~~~v~ErL~~~D~~~~~~~Y~iv~g~~~~~~~  127 (214)
                      +||+++||+++.+...+..|.+ ....  +.+..+|....+.-.+|.. ....=++++++| ++.+.|+..-++..    
T Consensus         1 ~ap~e~Vw~a~t~~~~~~~W~~-~~~~--~~~~~~Gg~~~~~~~~g~~-~~~~~~v~~~~p-~~~i~~~~~~~~~~----   71 (124)
T PF08327_consen    1 DAPPERVWEALTDPEGLAQWFT-TSEA--EMDFRPGGSFRFMDPDGGE-FGFDGTVLEVEP-PERIVFTWRMPDDP----   71 (124)
T ss_dssp             SSSHHHHHHHHHSHHHHHHHSE-EEEE--EEECSTTEEEEEEETTSEE-EEEEEEEEEEET-TTEEEEEEEEETSS----
T ss_pred             CcCHHHHHHHHCCHhHHhhccC-CCcc--eeeeecCCEEEEEecCCCC-ceeeEEEEEEeC-CEEEEEEEEccCCC----
Confidence            6999999999999999999921 1222  2233456554442234431 234445889998 57788886543221    


Q ss_pred             eccccccccCCCcceeeEEEEEEEeecCCCcceEEEEEEEEeeCCCCCCHHHHHHHHHHHHHHHHHHHHHHHh
Q 028067          128 WNFSNFISTSSSKLQNYSSIVTVHPEVIDGRPGTLVIESFVVDVPDGNTKDETCYFVEALIKCNLKSLADVSE  200 (214)
Q Consensus       128 ~~~~~~~~~~~~p~~~y~ati~v~p~~~~gs~~t~~~~s~~~~~p~~~~~~~~~~~v~~~~~~gL~~L~~~le  200 (214)
                                  +-.....++.|++ .+++|.++++...  +  +..   +.....+..-....|++|++.||
T Consensus        72 ------------~~~~~~v~~~~~~-~~~~T~l~~~~~~--~--~~~---~~~~~~~~~gw~~~l~~L~~~lE  124 (124)
T PF08327_consen   72 ------------DGPESRVTFEFEE-EGGGTRLTLTHSG--F--PDD---DEEEEGMEQGWEQMLDRLKAYLE  124 (124)
T ss_dssp             ------------SCEEEEEEEEEEE-ETTEEEEEEEEEE--E--HSH---HHHHHCHHHHHHHHHHHHHHHHH
T ss_pred             ------------CCCceEEEEEEEE-cCCcEEEEEEEEc--C--Ccc---HHHHHHHHHHHHHHHHHHHHHhC
Confidence                        1146678888888 4477766655521  1  111   11212156677778899998886

This protein is known to interact with the middle domain of Hsp90, and stimulate its ATPase activity []. It is probably a general up regulator of Hsp90 function, particularly contributing to its efficiency in conditions of increased stress []. p38 is also known to interact with the cytoplasmic domain of the VSV G protein, and may thus be involved in protein transport []. It has also been reported as being under expressed in Down's syndrome. This region is found repeated in two members of this family (Q8XY04 from SWISSPROT and Q6MH87 from SWISSPROT). ; GO: 0006950 response to stress; PDB: 2KEW_A 2KTE_A 2IL5_A 1ZXF_A 2L65_A 2GKD_A 1XN6_A 3OTL_B 2LCG_A 3Q63_D ....

>cd08876 START_1 Uncharacterized subgroup of the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domain family

Probab=98.27  E-value=0.00015  Score=59.97  Aligned_cols=148  Identities=9%  Similarity=0.031  Sum_probs=80.8

Q ss_pred             ceEEEEEeeeecCCHHHHHHHHhcCCCCCccCccceEEEE-ecCCCCCeEEEEEeeCCCC---cceEEEEEEEEeCCCcE
Q 028067           37 HQCSSSLVKHIKAPVHLVWSLVRRFDQPQKYKPFVSRCIV-QGDLQIGSVREVNVKSGLP---ATTSTERLELLDDEEHI  112 (214)
Q Consensus        37 ~~ve~sI~~~I~APae~VW~vi~Df~~l~~W~P~V~s~~v-eG~g~VGsvR~l~~~~G~p---~~~v~ErL~~~D~~~~~  112 (214)
                      ..+..+.  .|++|+++||+++.|.+..++|.|.+.++++ +-.+.--.+-.+.+.-..|   ...+..+-...+.++..
T Consensus        41 ~~~k~~~--~i~~s~e~v~~vi~d~e~~~~w~~~~~~~~vie~~~~~~~i~~~~~~~p~pvs~Rdfv~~~~~~~~~~~~~  118 (195)
T cd08876          41 KEFKAVA--EVDASIEAFLALLRDTESYPQWMPNCKESRVLKRTDDNERSVYTVIDLPWPVKDRDMVLRSTTEQDADDGS  118 (195)
T ss_pred             EEEEEEE--EEeCCHHHHHHHHhhhHhHHHHHhhcceEEEeecCCCCcEEEEEEEecccccCCceEEEEEEEEEcCCCCE
Confidence            5677777  8999999999999999999999999999975 4221111222233322211   11121111122221233


Q ss_pred             EEEEEEcCcc--cceeeeccccccccCCCcceeeEEEEEEEeecCCCcceEEEEEEEEeeCCCCCCHHHHHHHHHHHHHH
Q 028067          113 FGMRIVGGDH--RLKIIWNFSNFISTSSSKLQNYSSIVTVHPEVIDGRPGTLVIESFVVDVPDGNTKDETCYFVEALIKC  190 (214)
Q Consensus       113 ~~Y~iv~g~~--~~~~~~~~~~~~~~~~~p~~~y~ati~v~p~~~~gs~~t~~~~s~~~~~p~~~~~~~~~~~v~~~~~~  190 (214)
                      +...+...++  +..     .+|     .-...+.+.+.++|.++++|.+++...   +++......-.+..++......
T Consensus       119 ~~i~~~s~~~~~P~~-----~~~-----vR~~~~~~~~~i~~~~~~~t~vt~~~~---~dp~g~iP~~lv~~~~~~~~~~  185 (195)
T cd08876         119 VTITLEAAPEALPEQ-----KGY-----VRIKTVEGQWTFTPLGNGKTRVTYQAY---ADPGGSIPGWLANAFAKDAPYN  185 (195)
T ss_pred             EEEEeecCCccCCCC-----CCe-----EEceeceeeEEEEECCCCeEEEEEEEE---eCCCCCCCHHHHHHHHHHHHHH
Confidence            3333333222  100     000     014677788899998766665555553   3443333344455555566666


Q ss_pred             HHHHHHHHH
Q 028067          191 NLKSLADVS  199 (214)
Q Consensus       191 gL~~L~~~l  199 (214)
                      .|++|++++
T Consensus       186 ~l~~l~~~~  194 (195)
T cd08876         186 TLENLRKQL  194 (195)
T ss_pred             HHHHHHHhh
Confidence            666666654

Functionally uncharacterized subgroup of the START domain family. The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. For some mammalian members of the START family (STARDs), it is known which lipids bind in this pocket; these include cholesterol (STARD1, -3, -4, and -5), 25-hydroxycholesterol (STARD5), phosphatidylcholine (STARD2, -7, and -10), phosphatidylethanolamine (STARD10) and ceramides (STARD11). Mammalian STARDs participate in the control of various cellular processes, including lipid trafficking between intracellular compartments, lipid metabolism, and modulation of signaling events. Mutation or altered expression of STARDs is linked to diseases such as cancer, genetic disorders, a

>COG5637 Predicted integral membrane protein [Function unknown]

Probab=98.27  E-value=1.6e-05  Score=67.32  Aligned_cols=147  Identities=14%  Similarity=0.100  Sum_probs=97.9

Q ss_pred             CCCCceEEEEEeeeecCCHHHHHHHHhcCCCCCccCccceEEEEecCCCCCeEEEEEeeCCCCcceEEEEEEEEeCCCcE
Q 028067           33 DVHDHQCSSSLVKHIKAPVHLVWSLVRRFDQPQKYKPFVSRCIVQGDLQIGSVREVNVKSGLPATTSTERLELLDDEEHI  112 (214)
Q Consensus        33 ~~~~~~ve~sI~~~I~APae~VW~vi~Df~~l~~W~P~V~s~~veG~g~VGsvR~l~~~~G~p~~~v~ErL~~~D~~~~~  112 (214)
                      ...+..++.+|  +|++|+|+||.+.+|+.++|.|+-.+.|+++--+..  |.-.++.+.|... +..-+|+..- .+.+
T Consensus        66 ~~~~i~v~~~V--~I~kPae~vy~~W~dLe~lP~~Mkhl~SVkVlddkr--SrW~~~ap~g~~v-~Wea~it~d~-~~e~  139 (217)
T COG5637          66 MAKPIEVEVQV--TIDKPAEQVYAYWRDLENLPLWMKHLDSVKVLDDKR--SRWKANAPLGLEV-EWEAEITKDI-PGER  139 (217)
T ss_pred             ccCceEEEEEE--EeCChHHHHHHHHHhhhhhhHHHHhhceeeccCCCc--cceeEcCCCCceE-EEeehhhccC-CCcE
Confidence            56788888888  999999999999999999999999999998633321  2222333334321 3456676554 4788


Q ss_pred             EEEEEEcCcccceeeeccccccccCCCcceeeEEEEEEEeecCCCcceEEEEEEEEeeCCCCCCHHHHHH----HHHHHH
Q 028067          113 FGMRIVGGDHRLKIIWNFSNFISTSSSKLQNYSSIVTVHPEVIDGRPGTLVIESFVVDVPDGNTKDETCY----FVEALI  188 (214)
Q Consensus       113 ~~Y~iv~g~~~~~~~~~~~~~~~~~~~p~~~y~ati~v~p~~~~gs~~t~~~~s~~~~~p~~~~~~~~~~----~v~~~~  188 (214)
                      +.|+-++|--                   -.-++.+++.+..++.+.+.+++.|   .+|.+.......+    ..+..+
T Consensus       140 I~W~Sl~Ga~-------------------v~NsG~VrF~~~pg~~t~V~v~lsY---~~Pgg~~~a~va~~fgeepeqqI  197 (217)
T COG5637         140 IQWESLPGAR-------------------VENSGAVRFYDAPGDSTEVKVTLSY---RPPGGLLGAVVAKLFGEEPEQQI  197 (217)
T ss_pred             EeeecCCCCc-------------------CCCCccEEeeeCCCCceEEEEEEEe---cCCccHHHHHHHHHhccchHHHH
Confidence            9999988722                   1234567788877555677777754   3565543333222    234566


Q ss_pred             HHHHHHHHHHHhhhhhcCC
Q 028067          189 KCNLKSLADVSEHLAVQDR  207 (214)
Q Consensus       189 ~~gL~~L~~~le~~a~~~~  207 (214)
                      ..-|+..+...|..-.+.|
T Consensus       198 ~~DL~RFk~~~e~~q~s~r  216 (217)
T COG5637         198 QDDLERFKEYQENGQPSGR  216 (217)
T ss_pred             HHHHHHHHHHHHccCcccC
Confidence            6777777877777555554

>cd08892 SRPBCC_Aha1 Putative hydrophobic ligand-binding SRPBCC domain of the Hsp90 co-chaperone Aha1 and related proteins

Probab=98.09  E-value=0.00018  Score=56.08  Aligned_cols=121  Identities=12%  Similarity=0.070  Sum_probs=71.6

Q ss_pred             eeeecCCHHHHHHHHhcCCCCCccCccceEEEEecCCCCCeEEEEEeeCCCCcceEEEEEEEEeCCCcEEEEEEEcCccc
Q 028067           44 VKHIKAPVHLVWSLVRRFDQPQKYKPFVSRCIVQGDLQIGSVREVNVKSGLPATTSTERLELLDDEEHIFGMRIVGGDHR  123 (214)
Q Consensus        44 ~~~I~APae~VW~vi~Df~~l~~W~P~V~s~~veG~g~VGsvR~l~~~~G~p~~~v~ErL~~~D~~~~~~~Y~iv~g~~~  123 (214)
                      ++.|+||+++||+++.+...+..|.....+.  +  ..+|..-.  +.+|.    +.=++.+++| ++++.|+-.-.+.+
T Consensus         5 ~r~i~ap~e~Vw~A~T~~e~l~~W~~~~~~~--d--~~~GG~~~--~~~g~----~~g~~~~i~p-~~~l~~~w~~~~~~   73 (126)
T cd08892           5 TETFQVPAEELYEALTDEERVQAFTRSPAKV--D--AKVGGKFS--LFGGN----ITGEFVELVP-GKKIVQKWRFKSWP   73 (126)
T ss_pred             EEEECCCHHHHHHHHCCHHHHHhhcCCCcee--c--CCCCCEEE--EeCCc----eEEEEEEEcC-CCEEEEEEEcCCCC
Confidence            4488999999999999999999997532222  2  22333322  23452    3446778888 57777765321111


Q ss_pred             ceeeeccccccccCCCcceeeEEEEEEEeecCCCcceEEEEEEEEeeCCCCCCHHHHHHHHHHHHHHHHHHHHHHHh
Q 028067          124 LKIIWNFSNFISTSSSKLQNYSSIVTVHPEVIDGRPGTLVIESFVVDVPDGNTKDETCYFVEALIKCNLKSLADVSE  200 (214)
Q Consensus       124 ~~~~~~~~~~~~~~~~p~~~y~ati~v~p~~~~gs~~t~~~~s~~~~~p~~~~~~~~~~~v~~~~~~gL~~L~~~le  200 (214)
                      .                -..-..++.+++.+ ++|.++++-..    .+.+    .....-++.-...|++|++.|+
T Consensus        74 ~----------------~~~s~v~~~l~~~~-~gT~ltl~~~g----~~~~----~~~~~~~GW~~~~~~~l~~~~~  125 (126)
T cd08892          74 E----------------GHYSTVTLTFTEKD-DETELKLTQTG----VPAG----EEERTREGWERYYFESIKQTFG  125 (126)
T ss_pred             C----------------CCcEEEEEEEEECC-CCEEEEEEEEC----CCCc----hHHHHHhhHHHHHHHHHHHHhC
Confidence            0                02345788888874 67755555432    2332    1222334444557888888875

This subfamily includes the C-terminal SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain of Aha1, and related domains. Proteins in this group belong to the SRPBCC domain superfamily of proteins which bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. Aha1 is one of several co-chaperones, which regulate the dimeric chaperone Hsp90. Hsp90, Aha1, and other accessory proteins interact in a chaperone cycle driven by ATP binding and hydrolysis. Aha1 promotes dimerization of the N-terminal domains of Hsp90, and stimulates its low intrinsic ATPase activity. One Aha1 molecule binds per Hsp90 dimer. The N- and C- terminal domains of Aha1 cooperatively bind across the dimer interface of Hsp90. The C-terminal domain of Aha1 binds the N-terminal Hsp90 ATPase domain. Aha1 may regulate the dwell time of Hsp90 with client proteins. Aha1 m

>COG2867 Oligoketide cyclase/lipid transport protein [Lipid metabolism]

Probab=98.04  E-value=7.5e-05  Score=60.99  Aligned_cols=138  Identities=14%  Similarity=0.174  Sum_probs=95.9

Q ss_pred             eEEEEEeeeecCCHHHHHHHHhcCCCCCccCccceEEEEecCCCCCeEEEEEee-CCCCcceEEEEEEEEeCCCcEEEEE
Q 028067           38 QCSSSLVKHIKAPVHLVWSLVRRFDQPQKYKPFVSRCIVQGDLQIGSVREVNVK-SGLPATTSTERLELLDDEEHIFGMR  116 (214)
Q Consensus        38 ~ve~sI~~~I~APae~VW~vi~Df~~l~~W~P~V~s~~veG~g~VGsvR~l~~~-~G~p~~~v~ErL~~~D~~~~~~~Y~  116 (214)
                      +++++.  .+..+|+++.+++.|...+|+..|.|..+.+-......-+-.+++. .|. ..+..-|++ +++..+.+.-.
T Consensus         3 ~~~~s~--lv~y~a~~mF~LV~dV~~YP~FlP~C~~s~v~~~~~~~l~A~l~V~~k~i-~e~F~Trv~-~~~~~~~I~~~   78 (146)
T COG2867           3 QIERTA--LVPYSASQMFDLVNDVESYPEFLPWCSASRVLERNERELIAELDVGFKGI-RETFTTRVT-LKPTARSIDMK   78 (146)
T ss_pred             eeEeee--eccCCHHHHHHHHHHHHhCchhccccccceEeccCcceeEEEEEEEhhhe-eeeeeeeee-ecCchhhhhhh
Confidence            566777  8999999999999999999999999998876322223344445544 232 134555555 44545677777


Q ss_pred             EEcCcccceeeeccccccccCCCcceeeEEEEEEEeecCCCcceEEEEEEEEeeCCCCCCHHHHHHHHHHHHHHHHHHHH
Q 028067          117 IVGGDHRLKIIWNFSNFISTSSSKLQNYSSIVTVHPEVIDGRPGTLVIESFVVDVPDGNTKDETCYFVEALIKCNLKSLA  196 (214)
Q Consensus       117 iv~g~~~~~~~~~~~~~~~~~~~p~~~y~ati~v~p~~~~gs~~t~~~~s~~~~~p~~~~~~~~~~~v~~~~~~gL~~L~  196 (214)
                      .++|                   |++-..++.++.|.++++|.+.+.+++.+..       ......+..+++..-..+-
T Consensus        79 l~~G-------------------PFk~L~~~W~F~pl~~~~ckV~f~ldfeF~s-------~ll~~~~g~~f~~~a~~mv  132 (146)
T COG2867          79 LIDG-------------------PFKYLKGGWQFTPLSEDACKVEFFLDFEFKS-------RLLGALIGPVFKRLASKMV  132 (146)
T ss_pred             hhcC-------------------ChhhhcCceEEEECCCCceEEEEEEEeeehh-------HHHHHHHHHHHHHHHHHHH
Confidence            7776                   5688899999999877899899998876532       1344555666666666666


Q ss_pred             HHHhhhhhc
Q 028067          197 DVSEHLAVQ  205 (214)
Q Consensus       197 ~~le~~a~~  205 (214)
                      +.+++.|-+
T Consensus       133 ~aF~kRA~~  141 (146)
T COG2867         133 EAFEKRAKE  141 (146)
T ss_pred             HHHHHHHHH
Confidence            667666543

>COG3832 Uncharacterized conserved protein [Function unknown]

Probab=98.03  E-value=0.00015  Score=58.73  Aligned_cols=102  Identities=11%  Similarity=0.002  Sum_probs=63.7

Q ss_pred             CceEEEEEeeeecCCHHHHHHHHhcCCCCCccCccceEEEEecCCCCCeEEEEEeeCCCCcceEEEEEEEEeCCCcEEEE
Q 028067           36 DHQCSSSLVKHIKAPVHLVWSLVRRFDQPQKYKPFVSRCIVQGDLQIGSVREVNVKSGLPATTSTERLELLDDEEHIFGM  115 (214)
Q Consensus        36 ~~~ve~sI~~~I~APae~VW~vi~Df~~l~~W~P~V~s~~veG~g~VGsvR~l~~~~G~p~~~v~ErL~~~D~~~~~~~Y  115 (214)
                      +..++-+.  .|++|+++||++++|...+.+|.. -.-++.+...+.+....+...+|. .....-++.+++| ++++.|
T Consensus         7 ~~~~~~er--~i~aP~e~Vf~A~Tdpe~l~~W~~-~~~~~~d~r~gg~~~~~~~~~~g~-~~~~~~~~~~v~p-~~rIv~   81 (149)
T COG3832           7 DRTLEIER--LIDAPPEKVFEALTDPELLARWFM-PGGAEFDARTGGGERVRFRGPDGP-VHSFEGEYLEVVP-PERIVF   81 (149)
T ss_pred             CceEEEEE--eecCCHHHHHHHhcCHHHHHhhcC-CCCCccceecCCceEEeeecCCCC-eeecceEEEEEcC-CcEEEE
Confidence            44455555  899999999999999999999986 221333222112333445554552 2245677888998 576677


Q ss_pred             EEEcCcccceeeeccccccccCCCcceeeEEEEEEEeecCCC
Q 028067          116 RIVGGDHRLKIIWNFSNFISTSSSKLQNYSSIVTVHPEVIDG  157 (214)
Q Consensus       116 ~iv~g~~~~~~~~~~~~~~~~~~~p~~~y~ati~v~p~~~~g  157 (214)
                      +-.-.+..               .|...-..++++.+..+++
T Consensus        82 tw~~~~~~---------------~~~~~~~v~~~l~~~~~g~  108 (149)
T COG3832          82 TWDFDEDG---------------EPFLKSLVTITLTPEDDGG  108 (149)
T ss_pred             EeccCCCC---------------CcccCceEEEEEEEecCCC
Confidence            66443321               1224567788888876554

>PTZ00220 Activator of HSP-90 ATPase; Provisional

Probab=97.24  E-value=0.0047  Score=48.78  Aligned_cols=92  Identities=8%  Similarity=-0.001  Sum_probs=54.7

Q ss_pred             ecCCHHHHHHHHhcCCCCCccC-ccceEEEEecCCCCCeEEEEEeeCCCCcceEEEEEEEEeCCCcEEEEEEEcCcccce
Q 028067           47 IKAPVHLVWSLVRRFDQPQKYK-PFVSRCIVQGDLQIGSVREVNVKSGLPATTSTERLELLDDEEHIFGMRIVGGDHRLK  125 (214)
Q Consensus        47 I~APae~VW~vi~Df~~l~~W~-P~V~s~~veG~g~VGsvR~l~~~~G~p~~~v~ErL~~~D~~~~~~~Y~iv~g~~~~~  125 (214)
                      ++||+++||+++.|...+..|. +.  .++++  ..+|..-.+.  .+.    +.=+.+++|+. +++.|+.--.+.   
T Consensus         1 f~ap~e~Vw~A~Tdp~~l~~w~~~~--~~~~d--~~~GG~f~~~--~~~----~~G~~~ev~pp-~rlv~tw~~~~~---   66 (132)
T PTZ00220          1 FYVPPEVLYNAFLDAYTLTRLSLGS--PAEMD--AKVGGKFSLF--NGS----VEGEFTELEKP-KKIVQKWRFRDW---   66 (132)
T ss_pred             CCCCHHHHHHHHcCHHHHHHHhcCC--Ccccc--CCcCCEEEEe--cCc----eEEEEEEEcCC-CEEEEEEecCCC---
Confidence            5899999999999999988884 32  23332  2344443322  332    44567789884 666665422110   


Q ss_pred             eeeccccccccCCCcceeeEEEEEEEeecCCCcceEEEEE
Q 028067          126 IIWNFSNFISTSSSKLQNYSSIVTVHPEVIDGRPGTLVIE  165 (214)
Q Consensus       126 ~~~~~~~~~~~~~~p~~~y~ati~v~p~~~~gs~~t~~~~  165 (214)
                                 .+ + ..-..|+.+++.++++|.++++..
T Consensus        67 -----------~~-~-~~s~vt~~~~~~~~g~T~lt~~~~   93 (132)
T PTZ00220         67 -----------EE-D-VYSKVTIEFRAVEEDHTELKLTQT   93 (132)
T ss_pred             -----------CC-C-CceEEEEEEEeCCCCcEEEEEEEe
Confidence                       00 0 123578888886556776666554

>cd08905 START_STARD1-like Cholesterol-binding START domain of mammalian STARD1 and related proteins

Probab=96.11  E-value=0.56  Score=39.90  Aligned_cols=149  Identities=15%  Similarity=0.134  Sum_probs=80.6

Q ss_pred             ceEEEEEeeeecCCHHHHH-HHHhcCCCCCccCccceEEEE-e--cCCCCCeEEEEEeeC-CC---CcceEEEEEEEEeC
Q 028067           37 HQCSSSLVKHIKAPVHLVW-SLVRRFDQPQKYKPFVSRCIV-Q--GDLQIGSVREVNVKS-GL---PATTSTERLELLDD  108 (214)
Q Consensus        37 ~~ve~sI~~~I~APae~VW-~vi~Df~~l~~W~P~V~s~~v-e--G~g~VGsvR~l~~~~-G~---p~~~v~ErL~~~D~  108 (214)
                      .....+.  .+++|+++++ .++-|....++|.+.+.++++ +  ++.. =-++.+..+. +.   ++-.+.-+....++
T Consensus        49 k~~k~e~--~i~~~~~~l~~~l~~d~e~~~~W~~~~~~~~vl~~id~~~-~i~y~~~~p~p~~~vs~RD~V~~~~~~~~~  125 (209)
T cd08905          49 KVFRLEV--VVDQPLDNLYSELVDRMEQMGEWNPNVKEVKILQRIGKDT-LITHEVAAETAGNVVGPRDFVSVRCAKRRG  125 (209)
T ss_pred             cEEEEEE--EecCCHHHHHHHHHhchhhhceecccchHHHHHhhcCCCc-eEEEEEeccCCCCccCccceEEEEEEEEcC
Confidence            3344444  7899999999 777799999999999999874 3  2221 1123322221 11   11223333333333


Q ss_pred             CCcEE-EEEEEcCcccceeeeccccccccCCCcceeeEEEEEEEeecC--CCcceEEEEEEEEeeCCCCCCHHHHHHHHH
Q 028067          109 EEHIF-GMRIVGGDHRLKIIWNFSNFISTSSSKLQNYSSIVTVHPEVI--DGRPGTLVIESFVVDVPDGNTKDETCYFVE  185 (214)
Q Consensus       109 ~~~~~-~Y~iv~g~~~~~~~~~~~~~~~~~~~p~~~y~ati~v~p~~~--~gs~~t~~~~s~~~~~p~~~~~~~~~~~v~  185 (214)
                      .+..+ ..++.-...+.          ..+-.-..++.+-+.+.|.++  +.|.++|...   .|+--....-.+-.++.
T Consensus       126 ~~~~~~~~s~~~~~~P~----------~~~~VR~~~~~~~w~l~p~~~~~~~t~v~~~~~---~DpkG~iP~~lvN~~~~  192 (209)
T cd08905         126 STCVLAGMATHFGLMPE----------QKGFIRAENGPTCIVLRPLAGDPSKTKLTWLLS---IDLKGWLPKSIINQVLS  192 (209)
T ss_pred             CcEEEEEEeecCCCCCC----------CCCeEEEEeeccEEEEEECCCCCCceEEEEEEe---ecCCCCCCHHHHHHHhH
Confidence            33332 22221111110          001122466778888999764  4454444433   35433344456667777


Q ss_pred             HHHHHHHHHHHHHHhh
Q 028067          186 ALIKCNLKSLADVSEH  201 (214)
Q Consensus       186 ~~~~~gL~~L~~~le~  201 (214)
                      ..--..|.+|++.++.
T Consensus       193 ~~~~~~~~~Lr~~~~~  208 (209)
T cd08905         193 QTQVDFANHLRQRMAS  208 (209)
T ss_pred             HhHHHHHHHHHHHHhc
Confidence            7777888999988763

This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD1 (also known as StAR) and related proteins. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD1 has a high affinity for cholesterol. It can reduce macrophage lipid content and inflammatory status. It plays an essential role in steroidogenic tissues: transferring the steroid precursor, cholesterol, from the outer to the inner mitochondrial membrane, across the aqueous space. Mutations in the gene encoding STARD1/StAR can cause lipid congenital adrenal hyperplasia (CAH), an autosomal recessive disorder characterized by a steroid synthesis deficiency and an accumulation of cholesterol in

>PF08982 DUF1857: Domain of unknown function (DUF1857); InterPro: IPR015075 This protein has no known function

Probab=95.86  E-value=0.27  Score=40.28  Aligned_cols=60  Identities=23%  Similarity=0.335  Sum_probs=38.7

Q ss_pred             CHHHHHHHHhc-CCCCCccCccceEEEEecCCCCCeEEEEEeeCCCCcceEEEEEEEEeCCCcEEEE
Q 028067           50 PVHLVWSLVRR-FDQPQKYKPFVSRCIVQGDLQIGSVREVNVKSGLPATTSTERLELLDDEEHIFGM  115 (214)
Q Consensus        50 Pae~VW~vi~D-f~~l~~W~P~V~s~~veG~g~VGsvR~l~~~~G~p~~~v~ErL~~~D~~~~~~~Y  115 (214)
                      ..++||.-|-. -.+...+.|.+.+|++-.+....-.|.++|+ +   ..++|++....+  +.+.|
T Consensus        19 Tr~QlW~GL~~kar~p~~Fvp~i~~c~Vl~e~~~~~~R~v~fg-~---~~v~E~v~~~~~--~~V~f   79 (149)
T PF08982_consen   19 TREQLWRGLVLKARNPQLFVPGIDSCEVLSESDTVLTREVTFG-G---ATVRERVTLYPP--ERVDF   79 (149)
T ss_dssp             -HHHHHHHHHHHHH-GGGT-TT--EEEEEEE-SSEEEEEEEET-T---EEEEEEEEEETT--TEEEE
T ss_pred             CHHHHHHHHHHHHhChhhCccccCeEEEEecCCCeEEEEEEEC-C---cEEEEEEEEeCC--cEEEE
Confidence            46789998864 5556789999999986322224567999993 3   379999986544  56777

It is found in various hypothetical bacterial and fungal proteins. ; PDB: 2FFS_B.

>cd08874 START_STARD9-like C-terminal START domain of mammalian STARD9, and related domains; lipid binding

Probab=95.82  E-value=1  Score=38.52  Aligned_cols=31  Identities=26%  Similarity=0.449  Sum_probs=29.3

Q ss_pred             eecCCHHHHHHHHhcCCCCCccCccceEEEE
Q 028067           46 HIKAPVHLVWSLVRRFDQPQKYKPFVSRCIV   76 (214)
Q Consensus        46 ~I~APae~VW~vi~Df~~l~~W~P~V~s~~v   76 (214)
                      +|++|+++||+++.|....++|.+.+.++++
T Consensus        52 ~v~as~~~v~~ll~D~~~r~~Wd~~~~~~~v   82 (205)
T cd08874          52 VIKAPLATVWKAVKDPRTRFLYDTMIKTARI   82 (205)
T ss_pred             EEcCCHHHHHHHHhCcchhhhhHHhhhheee
Confidence            6799999999999999999999999999975

This subfamily includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD9 (also known as KIAA1300), and related domains. The START domain family belongs to the SRPBCC (START/RHO_alpha_C /PITP /Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. Some members of this subfamily have N-terminal kinesin motor domains. STARD9 interacts with supervillin, a protein important for efficient cytokinesis, perhaps playing a role in coordinating microtubule motors with actin and myosin II functions at membranes. The human gene encoding STARD9 lies within a target region for LGMD2A, an autosomal recessive form of limb-girdle muscular dystrophy.

>cd08877 START_2 Uncharacterized subgroup of the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domain family

Probab=95.72  E-value=0.5  Score=40.00  Aligned_cols=156  Identities=13%  Similarity=0.133  Sum_probs=82.6

Q ss_pred             EEEEEeeeecCCHHHHHHHHhcCCCCCccCccceEEE-EecCCCCCeEEEEEeeCCCCc-ceEEEEEE------EEeCCC
Q 028067           39 CSSSLVKHIKAPVHLVWSLVRRFDQPQKYKPFVSRCI-VQGDLQIGSVREVNVKSGLPA-TTSTERLE------LLDDEE  110 (214)
Q Consensus        39 ve~sI~~~I~APae~VW~vi~Df~~l~~W~P~V~s~~-veG~g~VGsvR~l~~~~G~p~-~~v~ErL~------~~D~~~  110 (214)
                      ..--+...|++|++.+.+++.|....+.|.|.+.+++ ++..+..-.+-.+.+  ..|+ ..-||-+.      .++. +
T Consensus        46 ~~~k~e~~i~~~~~~~~~vl~d~~~~~~W~p~~~~~~~l~~~~~~~~v~y~~~--~~PwPv~~RD~v~~~~~~~~~~~-~  122 (215)
T cd08877          46 LSLRMEGEIDGPLFNLLALLNEVELYKTWVPFCIRSKKVKQLGRADKVCYLRV--DLPWPLSNREAVFRGFGVDRLEE-N  122 (215)
T ss_pred             EEEEEEEEecCChhHeEEEEehhhhHhhhcccceeeEEEeecCCceEEEEEEE--eCceEecceEEEEEEEEEeeecc-C
Confidence            3333344789999999999999999999999998875 432211112222222  2343 11233332      2323 3


Q ss_pred             cEEEEEEEcCcccceeeeccccc-ccc---CCCcceeeEEEEEEEeecCCCcceEEEEEEEEeeCCCC-CCHHHHHHHHH
Q 028067          111 HIFGMRIVGGDHRLKIIWNFSNF-IST---SSSKLQNYSSIVTVHPEVIDGRPGTLVIESFVVDVPDG-NTKDETCYFVE  185 (214)
Q Consensus       111 ~~~~Y~iv~g~~~~~~~~~~~~~-~~~---~~~p~~~y~ati~v~p~~~~gs~~t~~~~s~~~~~p~~-~~~~~~~~~v~  185 (214)
                      ..+...+..-++..+.- .+.+. +..   .-.-...+.+-+.++|.+++.|.++++..   .||--. .....+-.+..
T Consensus       123 ~~i~i~~~si~~~~~~~-~~~~~~iP~~~~~~vR~~~~~~~~~i~p~~~~~t~v~~~~~---~DP~g~~IP~~liN~~~k  198 (215)
T cd08877         123 GQIVILLKSIDDDPEFL-KLTDLDIPSTSAKGVRRIIKYYGFVITPISPTKCYLRFVAN---VDPKMSLVPKSLLNFVAR  198 (215)
T ss_pred             CCEEEEEecCCCCcccc-cccCCcCCCCCCCceEEEEecceEEEEEcCCCCeEEEEEEE---cCCCcccCCHHHHHHHHH
Confidence            33322221111100000 00000 000   11124667788889998866665555443   343223 34556666777


Q ss_pred             HHHHHHHHHHHHHHhh
Q 028067          186 ALIKCNLKSLADVSEH  201 (214)
Q Consensus       186 ~~~~~gL~~L~~~le~  201 (214)
                      .+....+.+|++.+++
T Consensus       199 ~~~~~~~~~l~k~~~~  214 (215)
T cd08877         199 KFAGLLFEKIQKAAKN  214 (215)
T ss_pred             HHHHHHHHHHHHHHhc
Confidence            7777888888887764

Functionally uncharacterized subgroup of the START domain family. The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. For some mammalian members of the START family (STARDs), it is known which lipids bind in this pocket; these include cholesterol (STARD1, -3, -4, and -5), 25-hydroxycholesterol (STARD5), phosphatidylcholine (STARD2, -7, and -10), phosphatidylethanolamine (STARD10) and ceramides (STARD11). Mammalian STARDs participate in the control of various cellular processes, including lipid trafficking between intracellular compartments, lipid metabolism, and modulation of signaling events. Mutation or altered expression of STARDs is linked to diseases such as cancer, genetic disorders, a

>cd08906 START_STARD3-like Cholesterol-binding START domain of mammalian STARD3 and related proteins

Probab=95.57  E-value=1.3  Score=37.80  Aligned_cols=149  Identities=13%  Similarity=0.051  Sum_probs=76.8

Q ss_pred             ceEEEEEeeeecCCHHHHH-HHHhcCCCCCccCccceEEEE-e--cCCCCCeEEEEEeeC-CCC---cceEEEEEEEEeC
Q 028067           37 HQCSSSLVKHIKAPVHLVW-SLVRRFDQPQKYKPFVSRCIV-Q--GDLQIGSVREVNVKS-GLP---ATTSTERLELLDD  108 (214)
Q Consensus        37 ~~ve~sI~~~I~APae~VW-~vi~Df~~l~~W~P~V~s~~v-e--G~g~VGsvR~l~~~~-G~p---~~~v~ErL~~~D~  108 (214)
                      ..+....  .+++|+++++ +++.|....++|.+.+.++++ +  +++. =-++.++... +.|   .-.+.-|-..-+.
T Consensus        49 ~~fk~~~--~v~~~~~~l~~~ll~D~~~~~~W~~~~~~~~vi~~~~~~~-~i~Y~v~~p~~~~pv~~RDfV~~r~~~~~~  125 (209)
T cd08906          49 KTFILKA--FMQCPAELVYQEVILQPEKMVLWNKTVSACQVLQRVDDNT-LVSYDVAAGAAGGVVSPRDFVNVRRIERRR  125 (209)
T ss_pred             cEEEEEE--EEcCCHHHHHHHHHhChhhccccCccchhhhheeeccCCc-EEEEEEccccccCCCCCCceEEEEEEEecC
Confidence            3344444  6799999998 689999999999999999974 3  2221 1112233221 112   1123223333333


Q ss_pred             CCcE-EEEEEEcCcccceeeeccccccccCCCcceeeEEEEEEEe--ecCCCcceEEEEEEEEeeCCCCCCHHHHHHHHH
Q 028067          109 EEHI-FGMRIVGGDHRLKIIWNFSNFISTSSSKLQNYSSIVTVHP--EVIDGRPGTLVIESFVVDVPDGNTKDETCYFVE  185 (214)
Q Consensus       109 ~~~~-~~Y~iv~g~~~~~~~~~~~~~~~~~~~p~~~y~ati~v~p--~~~~gs~~t~~~~s~~~~~p~~~~~~~~~~~v~  185 (214)
                      .+.. +..++.....|..     ++|+     -..++.+-+-+.|  .+++.|.+||...   .|+--....-.+..++.
T Consensus       126 ~~~i~~~~sv~~~~~P~~-----~~~V-----R~~~~~~G~~i~~~~~~~~~t~vt~~~~---~Dp~G~lP~~lvN~~~~  192 (209)
T cd08906         126 DRYVSAGISTTHSHKPPL-----SKYV-----RGENGPGGFVVLKSASNPSVCTFIWILN---TDLKGRLPRYLIHQSLA  192 (209)
T ss_pred             CcEEEEEEEEecCCCCCC-----CCeE-----EEeeeccEEEEEECCCCCCceEEEEEEe---cCCCCCCCHHHHHHHHH
Confidence            3322 2333322211110     0000     0222333344555  3445565565554   24333344445666677


Q ss_pred             HHHHHHHHHHHHHHhh
Q 028067          186 ALIKCNLKSLADVSEH  201 (214)
Q Consensus       186 ~~~~~gL~~L~~~le~  201 (214)
                      ...-.-|++|++.++.
T Consensus       193 ~~~~~~~~~LR~~~~~  208 (209)
T cd08906         193 ATMFEFASHLRQRIRD  208 (209)
T ss_pred             HHHHHHHHHHHHHHhh
Confidence            7777778889888764

This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD3 (also known as metastatic lymph node 64/MLN64) and related proteins. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD3 has a high affinity for cholesterol. It may function in trafficking endosomal cholesterol to a cytosolic acceptor or membrane. In addition to having a cytoplasmic START cholesterol-binding domain, STARD3 also contains an N-terminal MENTAL cholesterol-binding and protein-protein interaction domain. The MENTAL domain contains transmembrane helices and anchors MLN64 to endosome membranes. The gene encoding STARD3 is overexpressed in about 25% of breast cancers.

>COG4276 Uncharacterized conserved protein [Function unknown]

Probab=95.54  E-value=1.1  Score=36.68  Aligned_cols=106  Identities=25%  Similarity=0.360  Sum_probs=66.3

Q ss_pred             eecCCHHHHHHHHhcCCCCCccCccceEEEEecCCCCCeEEEEEee---CCCC-cceEEEEEEE--EeCCCcEEEEEEEc
Q 028067           46 HIKAPVHLVWSLVRRFDQPQKYKPFVSRCIVQGDLQIGSVREVNVK---SGLP-ATTSTERLEL--LDDEEHIFGMRIVG  119 (214)
Q Consensus        46 ~I~APae~VW~vi~Df~~l~~W~P~V~s~~veG~g~VGsvR~l~~~---~G~p-~~~v~ErL~~--~D~~~~~~~Y~iv~  119 (214)
                      .|+||.|.||+.-+..+++..-.|-.+.+.-+|+ .++..-.++++   -|.| ..+.+-|.++  +|+ ..+|+=.++.
T Consensus         9 ~i~aP~E~VWafhsrpd~lq~LTppw~VV~p~g~-eitqgtri~m~l~pfglp~~~tW~Arhte~~~d~-~~~FtDv~i~   86 (153)
T COG4276           9 TITAPHEMVWAFHSRPDALQRLTPPWIVVLPLGS-EITQGTRIAMGLTPFGLPAGLTWVARHTESGFDN-GSRFTDVCIT   86 (153)
T ss_pred             EecCCHHHHhhhhcCccHHHhcCCCcEEeccCCC-cccceeeeeecceeecCCCCceEEEEeeecccCC-cceeeeeeec
Confidence            5899999999999999998665554442211452 23333333332   2332 1356778887  888 5778888877


Q ss_pred             CcccceeeeccccccccCCCcceeeEEEEEEEeecCCCcceEEEEEEEEeeCCCC
Q 028067          120 GDHRLKIIWNFSNFISTSSSKLQNYSSIVTVHPEVIDGRPGTLVIESFVVDVPDG  174 (214)
Q Consensus       120 g~~~~~~~~~~~~~~~~~~~p~~~y~ati~v~p~~~~gs~~t~~~~s~~~~~p~~  174 (214)
                      |                 |+|.-+..-+=++.+.+ ++   |+...+-.+++|.+
T Consensus        87 g-----------------Pfp~~~WrHtH~F~~eg-g~---TvliD~Vsye~p~g  120 (153)
T COG4276          87 G-----------------PFPALNWRHTHNFVDEG-GG---TVLIDSVSYELPAG  120 (153)
T ss_pred             C-----------------CccceeeEEEeeeecCC-Cc---EEEEeeEEeeccCc
Confidence            5                 34445677777777765 44   56666655566766

>PF10698 DUF2505: Protein of unknown function (DUF2505); InterPro: IPR019639 This entry represents proteins found Actinobacteria and Proteobacteria

Probab=95.16  E-value=0.9  Score=36.93  Aligned_cols=132  Identities=22%  Similarity=0.182  Sum_probs=68.2

Q ss_pred             EEEeeeecCCHHHHHHHHhcCCCC----CccC---ccceEEEEecCCCCCeEEE-EEee-CCCCc---------ceEEEE
Q 028067           41 SSLVKHIKAPVHLVWSLVRRFDQP----QKYK---PFVSRCIVQGDLQIGSVRE-VNVK-SGLPA---------TTSTER  102 (214)
Q Consensus        41 ~sI~~~I~APae~VW~vi~Df~~l----~~W~---P~V~s~~veG~g~VGsvR~-l~~~-~G~p~---------~~v~Er  102 (214)
                      .++  ++++|+|+||+++.|-.-+    ....   ..+.+++.+|++ + .++. -.+. +..|.         ..+ ++
T Consensus         3 ~~~--~~~~~~~~v~~~~~d~~y~~~r~~~~g~~~~~~~~~~~~~~g-~-~v~~~~~v~~~~lP~~~~k~v~~~l~v-~~   77 (159)
T PF10698_consen    3 HSV--EYPAPVERVWAAFTDEDYWEARCAALGADNAEVESFEVDGDG-V-RVTVRQTVPADKLPSAARKFVGGDLRV-TR   77 (159)
T ss_pred             EEE--EcCCCHHHHHHHHcCHHHHHHHHHHcCCCCceEEEEEEcCCe-E-EEEEEEecChhhCCHHHHHhcCCCeEE-EE
Confidence            345  8899999999999874322    1111   123444444443 1 1111 1111 23331         122 23


Q ss_pred             EEEE---eCCCcEEEEEEEcCcccceeeeccccccccCCCcceeeEEEEEEEeecCCCcceEEEEEEEEeeCCCCCCHHH
Q 028067          103 LELL---DDEEHIFGMRIVGGDHRLKIIWNFSNFISTSSSKLQNYSSIVTVHPEVIDGRPGTLVIESFVVDVPDGNTKDE  179 (214)
Q Consensus       103 L~~~---D~~~~~~~Y~iv~g~~~~~~~~~~~~~~~~~~~p~~~y~ati~v~p~~~~gs~~t~~~~s~~~~~p~~~~~~~  179 (214)
                      -..+   ++..+..+|++--.+.|                  -...+++.|.|.+ ++|..++...-.. .+|-  .-..
T Consensus        78 ~e~w~~~~~g~~~g~~~~~~~G~P------------------~~~~G~~~L~~~~-~gt~~~~~g~v~v-~VPl--vGgk  135 (159)
T PF10698_consen   78 TETWTPLDDGRRTGTFTVSIPGAP------------------VSISGTMRLRPDG-GGTRLTVEGEVKV-KVPL--VGGK  135 (159)
T ss_pred             EEEEecCCCCeEEEEEEEEecCce------------------EEEEEEEEEecCC-CCEEEEEEEEEEE-EEcc--ccHH
Confidence            3344   55566666666432222                  3789999999955 6775555544322 3342  2224


Q ss_pred             HHHHHHHHHHHHHHHHHHHH
Q 028067          180 TCYFVEALIKCNLKSLADVS  199 (214)
Q Consensus       180 ~~~~v~~~~~~gL~~L~~~l  199 (214)
                      +++++...+...|+..++..
T Consensus       136 iE~~v~~~~~~~~~~e~~~~  155 (159)
T PF10698_consen  136 IEKAVAENLRKLLEAEQEFT  155 (159)
T ss_pred             HHHHHHHHHHHHHHHHHHHH
Confidence            55555666666666555544

The function is not known.

>cd08903 START_STARD5-like Lipid-binding START domain of mammalian STARD5 and related proteins

Probab=94.10  E-value=3.2  Score=35.18  Aligned_cols=31  Identities=19%  Similarity=0.249  Sum_probs=27.1

Q ss_pred             eecCCHHHHHHHHhcCCCC--CccCccceEEEE
Q 028067           46 HIKAPVHLVWSLVRRFDQP--QKYKPFVSRCIV   76 (214)
Q Consensus        46 ~I~APae~VW~vi~Df~~l--~~W~P~V~s~~v   76 (214)
                      .++++++++++++.|..+.  ++|.+.+.++++
T Consensus        53 ~i~~s~~~~~~~l~d~~~~~r~~W~~~~~~~~v   85 (208)
T cd08903          53 IVYATLEQVWDCLKPAAGGLRVKWDQNVKDFEV   85 (208)
T ss_pred             EecCCHHHHHHHHHhccchhhhhhhhccccEEE
Confidence            6799999999999887654  799999999974

This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD5, and related domains. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD5 is ubiquitously expressed, with highest levels in liver and kidney. STARD5 functions in the kidney within the proximal tubule cells where it is associated with the Endoplasmic Reticulum (ER), and may participate in ER-associated cholesterol transport. It binds cholesterol and 25-hydroxycholesterol. Expression of the gene encoding STARD5 is increased by ER stress, and its mRNA and protein levels are elevated in a type I diabetic mouse model of human diabetic nephropathy.

>cd08913 START_STARD14-like Lipid-binding START domain of mammalian STARDT14 and related proteins

Probab=94.00  E-value=2.7  Score=36.98  Aligned_cols=31  Identities=6%  Similarity=0.238  Sum_probs=29.4

Q ss_pred             eecCCHHHHHHHHhcCCCCCccCccceEEEE
Q 028067           46 HIKAPVHLVWSLVRRFDQPQKYKPFVSRCIV   76 (214)
Q Consensus        46 ~I~APae~VW~vi~Df~~l~~W~P~V~s~~v   76 (214)
                      .+++|+++++++|.|....++|.+.+.+|++
T Consensus        88 ~vd~s~e~v~~lL~D~~~r~~Wd~~~~e~~v  118 (240)
T cd08913          88 VVHVDAAQAFLLLSDLRRRPEWDKHYRSCEL  118 (240)
T ss_pred             EEcCCHHHHHHHHhChhhhhhhHhhccEEEE
Confidence            6799999999999999999999999999985

This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian brown fat-inducible STARD14 (also known as Acyl-Coenzyme A Thioesterase 11 or ACOT11, BFIT, THEA, THEM1, KIAA0707, and MGC25974) and related proteins. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD14/ACOT11 is a type II acetyl-CoA thioesterase; it catalyzes the hydrolysis of acyl-CoAs to free fatty acid and CoASH. Human STARD14 displays acetyl-CoA thioesterase activity towards medium(C12)- and long(C16)-chain fatty acyl-CoA substrates. In addition to having a START domain, most proteins in this subgroup have two tandem copies of the hotdog domain. There are two splice variants of

>KOG3177 consensus Oligoketide cyclase/lipid transport protein [Lipid transport and metabolism]

Probab=93.63  E-value=1.4  Score=38.40  Aligned_cols=144  Identities=13%  Similarity=0.179  Sum_probs=80.7

Q ss_pred             CCCcchhHHHhhhhcCCCCCceEEEEEeeeecCCHHHHHHHHhcCCCCCccCccceEEEEecCC-CCCeEEEEEeeCCCC
Q 028067           17 GFGKIEEDYIKRHHKHDVHDHQCSSSLVKHIKAPVHLVWSLVRRFDQPQKYKPFVSRCIVQGDL-QIGSVREVNVKSGLP   95 (214)
Q Consensus        17 ~~~~~~~~~~~~~~~~~~~~~~ve~sI~~~I~APae~VW~vi~Df~~l~~W~P~V~s~~veG~g-~VGsvR~l~~~~G~p   95 (214)
                      ++++-|.-|-.|-                .|+.+++++++++++...++.+.|.|+++.|...+ .-+..-.+.+  |.|
T Consensus        62 ~~~~r~k~Y~err----------------ligysp~~my~vVS~V~~Y~~FVPwC~kS~V~~~~P~~~~kA~LeV--GFk  123 (227)
T KOG3177|consen   62 PFTNREKAYSERR----------------LIGYSPSEMYSVVSNVSEYHEFVPWCKKSDVTSRRPSGPLKADLEV--GFK  123 (227)
T ss_pred             CcchHHHHHHHHh----------------hhCCCHHHHHHHHHhHHHhhccccceeccceeecCCCCCceeeEEe--cCc
Confidence            5556666665554                68999999999999999999999999999874221 2334444554  543


Q ss_pred             c--ceEEEEEEEEeCCCcEEEEEEEcCcccceeeeccccccccCCCcceeeEEEEEEEeec--CCCcceEEEEEEEEeeC
Q 028067           96 A--TTSTERLELLDDEEHIFGMRIVGGDHRLKIIWNFSNFISTSSSKLQNYSSIVTVHPEV--IDGRPGTLVIESFVVDV  171 (214)
Q Consensus        96 ~--~~v~ErL~~~D~~~~~~~Y~iv~g~~~~~~~~~~~~~~~~~~~p~~~y~ati~v~p~~--~~gs~~t~~~~s~~~~~  171 (214)
                      .  .....+++..++ .+  .|++.-. +++                +..-....++.|..  .+.|.+.+.+.+++...
T Consensus       124 ~l~E~y~S~Vt~~~p-~l--~kt~~~d-~rL----------------F~~L~t~Wsf~pg~~~p~tc~ldf~v~FeF~S~  183 (227)
T KOG3177|consen  124 PLDERYTSNVTCVKP-HL--TKTVCAD-GRL----------------FNHLITIWSFKPGPNIPRTCTLDFSVSFEFKSL  183 (227)
T ss_pred             ccchhheeeeEEecc-cc--eEEeecc-ccH----------------HHhhhheeeeccCCCCCCeEEEEEEEEEEehhH
Confidence            2  234455665555 33  4444332 233                13445556777765  24444444454443222


Q ss_pred             CCCCCHHHHHHHHHHHHHHHHHHHHHHHhh
Q 028067          172 PDGNTKDETCYFVEALIKCNLKSLADVSEH  201 (214)
Q Consensus       172 p~~~~~~~~~~~v~~~~~~gL~~L~~~le~  201 (214)
                      --   ...+.-|...+.+...++..+.+.+
T Consensus       184 lh---s~va~~Ffd~V~~~~v~AF~~ra~~  210 (227)
T KOG3177|consen  184 LH---SQVATIFFDEVVKQMVNAFEQRARK  210 (227)
T ss_pred             HH---HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            11   1223334444444445555554444

>cd08873 START_STARD14_15-like Lipid-binding START domain of mammalian STARDT14, -15, and related proteins

Probab=93.45  E-value=5.1  Score=35.25  Aligned_cols=114  Identities=11%  Similarity=0.057  Sum_probs=63.5

Q ss_pred             EEEEEeeeecCCHHHHHHHHhcCCCCCccCccceEEEE-e--cCCCCCeEEEEEeeCC---CCcceEEEEEEE--EeCCC
Q 028067           39 CSSSLVKHIKAPVHLVWSLVRRFDQPQKYKPFVSRCIV-Q--GDLQIGSVREVNVKSG---LPATTSTERLEL--LDDEE  110 (214)
Q Consensus        39 ve~sI~~~I~APae~VW~vi~Df~~l~~W~P~V~s~~v-e--G~g~VGsvR~l~~~~G---~p~~~v~ErL~~--~D~~~  110 (214)
                      +....  .+++|++++++++.|...-++|.+.+.++++ +  ++. .+ +-+..+..-   .|.-.+.-+-..  .+.++
T Consensus        79 fk~e~--~vd~s~~~v~dlL~D~~~R~~WD~~~~e~evI~~id~d-~~-iyy~~~p~PwPvk~RDfV~~~s~~~~~~~~~  154 (235)
T cd08873          79 FCVEL--KVQTCASDAFDLLSDPFKRPEWDPHGRSCEEVKRVGED-DG-IYHTTMPSLTSEKPNDFVLLVSRRKPATDGD  154 (235)
T ss_pred             EEEEE--EecCCHHHHHHHHhCcchhhhhhhcccEEEEEEEeCCC-cE-EEEEEcCCCCCCCCceEEEEEEEEeccCCCC
Confidence            44444  6799999999999999999999999999975 4  332 23 222333211   111112211111  23322


Q ss_pred             -cEEEEEEEc-CcccceeeeccccccccCCCcceeeEEEEEEEeecCCCcceEEEEEE
Q 028067          111 -HIFGMRIVG-GDHRLKIIWNFSNFISTSSSKLQNYSSIVTVHPEVIDGRPGTLVIES  166 (214)
Q Consensus       111 -~~~~Y~iv~-g~~~~~~~~~~~~~~~~~~~p~~~y~ati~v~p~~~~gs~~t~~~~s  166 (214)
                       ..+..+-+. ...|..          .+-.-...+.+-+.+.|.++++|.+++..+.
T Consensus       155 ~~~I~~~SV~h~~~Pp~----------kgyVR~~~~~ggW~I~p~~~~~t~VtY~~~~  202 (235)
T cd08873         155 PYKVAFRSVTLPRVPQT----------PGYSRTEVACAGFVIRQDCGTCTEVSYYNET  202 (235)
T ss_pred             eEEEEEeeeecccCCCC----------CCeEEEEEEeeeEEEEECCCCcEEEEEEEEc
Confidence             222332232 211110          0112257788999999988677766666553

This subfamily includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian brown fat-inducible STARD14 (also known as Acyl-Coenzyme A Thioesterase 11 or ACOT11, BFIT, THEA, THEM1, KIAA0707, and MGC25974), STARD15/ACOT12 (also known as cytoplasmic acetyl-CoA hydrolase/CACH, THEAL, and MGC105114), and related domains. The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD14/ACOT11 and STARD15/ACOT12 are type II acetyl-CoA thioesterases; they catalyze the hydrolysis of acyl-CoAs to free fatty acid and CoASH. Human STARD14 displays acetyl-CoA thioesterase activity towards medium(C12)- and long(C16)-chain fatty acyl-CoA substrates. Rat CACH hydrolyzes acetyl-CoA to acetate an

>cd08871 START_STARD10-like Lipid-binding START domain of mammalian STARD10 and related proteins

Probab=92.89  E-value=5.3  Score=33.90  Aligned_cols=143  Identities=11%  Similarity=-0.002  Sum_probs=74.0

Q ss_pred             ee-cCCHHHHHHHHhcCCCCCccCccceEEE-EecCCCCCeEEEEEeeCCCC---cceEEEEEEEEeCCCcEE-EEEEEc
Q 028067           46 HI-KAPVHLVWSLVRRFDQPQKYKPFVSRCI-VQGDLQIGSVREVNVKSGLP---ATTSTERLELLDDEEHIF-GMRIVG  119 (214)
Q Consensus        46 ~I-~APae~VW~vi~Df~~l~~W~P~V~s~~-veG~g~VGsvR~l~~~~G~p---~~~v~ErL~~~D~~~~~~-~Y~iv~  119 (214)
                      ++ ++|++++++++.|....+.|.+.+..++ ++-.+.--.+.+..+....|   +-.+.-|....++....+ ..++..
T Consensus        54 ~~~~~s~e~~~~~l~D~~~r~~Wd~~~~e~~~ie~~d~~~~i~y~~~~~P~pvs~RDfV~~r~~~~~~~~~vi~~~sv~~  133 (222)
T cd08871          54 IFPDVPAETLYDVLHDPEYRKTWDSNMIESFDICQLNPNNDIGYYSAKCPKPLKNRDFVNLRSWLEFGGEYIIFNHSVKH  133 (222)
T ss_pred             EeCCCCHHHHHHHHHChhhhhhhhhhhceeEEEEEcCCCCEEEEEEeECCCCCCCCeEEEEEEEEeCCCEEEEEeccccC
Confidence            44 7999999999999888899999998886 44211112233333322222   112222222222211111 222211


Q ss_pred             CcccceeeeccccccccCCCcceeeEEEEEEEeecCCCcceEEEEEEEEeeCCCCCCHHHHHHHHHHHHHHHHHHHHHHH
Q 028067          120 GDHRLKIIWNFSNFISTSSSKLQNYSSIVTVHPEVIDGRPGTLVIESFVVDVPDGNTKDETCYFVEALIKCNLKSLADVS  199 (214)
Q Consensus       120 g~~~~~~~~~~~~~~~~~~~p~~~y~ati~v~p~~~~gs~~t~~~~s~~~~~p~~~~~~~~~~~v~~~~~~gL~~L~~~l  199 (214)
                      .+.+.          ..+-.-...+.+-+.++|.++++|.+++...   .|+--....-.+..++.......|++|++.+
T Consensus       134 ~~~P~----------~~g~VR~~~~~~g~~i~p~~~~~t~vt~~~~---~Dp~G~IP~~lvN~~~~~~~~~~l~~l~k~~  200 (222)
T cd08871         134 KKYPP----------RKGFVRAISLLTGYLIRPTGPKGCTLTYVTQ---NDPKGSLPKWVVNKATTKLAPKVMKKLHKAA  200 (222)
T ss_pred             CCCCC----------CCCeEEeEEEccEEEEEECCCCCEEEEEEEe---cCCCCCcCHHHHHHHHHHHhHHHHHHHHHHH
Confidence            11111          0000112456777888998766665555543   2432222233445555666667788888887


Q ss_pred             hh
Q 028067          200 EH  201 (214)
Q Consensus       200 e~  201 (214)
                      ++
T Consensus       201 ~~  202 (222)
T cd08871         201 LK  202 (222)
T ss_pred             HH
Confidence            76

This subfamily includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD10 (also known as CGI-52, PTCP-like, and SDCCAG28). The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD10 binds phophatidylcholine and phosphatidylethanolamine. This protein is widely expressed and is synthesized constitutively in many organs. It may function in the liver in the export of phospholipids into bile. It is concentrated in the sperm flagellum, and may play a role in energy metabolism. In the mammary gland it may participate in the enrichment of lipids in milk, and be a potential marker of differentiation. Its expression is induced in this gland during gestation and lactation. It is overe

>cd08869 START_RhoGAP C-terminal lipid-binding START domain of mammalian STARD8, -12, -13 and related proteins, which also have an N-terminal Rho GTPase-activating protein (RhoGAP) domain

Probab=92.49  E-value=5.7  Score=33.33  Aligned_cols=141  Identities=15%  Similarity=0.033  Sum_probs=73.1

Q ss_pred             EEEEeeeecCCHHHHHHHHhcCCCCCccCccceEEEE-e--cCCCCCeEEEEEeeCCCCc---ceEEEEEEEEeCCCc--
Q 028067           40 SSSLVKHIKAPVHLVWSLVRRFDQPQKYKPFVSRCIV-Q--GDLQIGSVREVNVKSGLPA---TTSTERLELLDDEEH--  111 (214)
Q Consensus        40 e~sI~~~I~APae~VW~vi~Df~~l~~W~P~V~s~~v-e--G~g~VGsvR~l~~~~G~p~---~~v~ErL~~~D~~~~--  111 (214)
                      ..+.  +|++++++|++.+-|..  +.|.+.+.++++ +  ++.  =.+-+..+..-.|.   -.+.-|....+.++.  
T Consensus        47 K~~~--~v~a~~~~v~~~l~d~r--~~Wd~~~~~~~vie~id~~--~~i~y~~~~~p~pv~~RDfV~~r~~~~~~~~g~~  120 (197)
T cd08869          47 RAST--EVEAPPEEVLQRILRER--HLWDDDLLQWKVVETLDED--TEVYQYVTNSMAPHPTRDYVVLRTWRTDLPKGAC  120 (197)
T ss_pred             EEEE--EeCCCHHHHHHHHHHHH--hccchhhheEEEEEEecCC--cEEEEEEeeCCCCCCCceEEEEEEEEecCCCCcE
Confidence            5555  78999999999998753  789999999974 4  222  11222222221121   122222323233332  


Q ss_pred             EEEEEEEcCcccceeeeccccccccCCCcceeeEEEEEEEeecCCCcceEEEEEEEEeeCCCCCCHHHHHHHHHHHHHHH
Q 028067          112 IFGMRIVGGDHRLKIIWNFSNFISTSSSKLQNYSSIVTVHPEVIDGRPGTLVIESFVVDVPDGNTKDETCYFVEALIKCN  191 (214)
Q Consensus       112 ~~~Y~iv~g~~~~~~~~~~~~~~~~~~~p~~~y~ati~v~p~~~~gs~~t~~~~s~~~~~p~~~~~~~~~~~v~~~~~~g  191 (214)
                      .+..+-++  ++.        .+..+-.-...+.+-+.++|.++++|.+|+....   | |-|.-..-+......+....
T Consensus       121 ~i~~~Sv~--~~~--------~~p~g~VR~~~~~~g~~i~p~~~~~t~vty~~~~---D-p~G~iP~wl~N~~~~~~~~~  186 (197)
T cd08869         121 VLVETSVE--HTE--------PVPLGGVRAVVLASRYLIEPCGSGKSRVTHICRV---D-LRGRSPEWYNKVYGHLCARE  186 (197)
T ss_pred             EEEEECCc--CCC--------CCCCCCEEEEEEeeeEEEEECCCCCeEEEEEEEE---C-CCCCCCceeecchHhHHHHH
Confidence            22222221  100        0000011134566778899987677767766653   3 22222222234445677778


Q ss_pred             HHHHHHHHh
Q 028067          192 LKSLADVSE  200 (214)
Q Consensus       192 L~~L~~~le  200 (214)
                      |++|++-+.
T Consensus       187 ~~~l~~~~~  195 (197)
T cd08869         187 LLRIRDSFR  195 (197)
T ss_pred             HHHHHhhcc
Confidence            888887654

This subfamily includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD8 (also known as deleted in liver cancer 3/DLC3, and Arhgap38), STARD12 (also known as DLC-1, Arhgap7, and p122-RhoGAP), and STARD13 (also known as DLC-2, Arhgap37, and SDCCAG13). The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. Proteins belonging to this subfamily also have a RhoGAP domain. Some, including STARD12, -and -13, also have an N-terminal SAM (sterile alpha motif) domain; these have a SAM-RhoGAP-START domain organization. This subfamily is involved in cancer development. A large spectrum of cancers have dysregul

>cd08868 START_STARD1_3_like Cholesterol-binding START domain of mammalian STARD1, -3 and related proteins

Probab=90.24  E-value=10  Score=31.85  Aligned_cols=31  Identities=19%  Similarity=0.531  Sum_probs=27.0

Q ss_pred             eecCCHHHHHH-HHhcCCCCCccCccceEEEE
Q 028067           46 HIKAPVHLVWS-LVRRFDQPQKYKPFVSRCIV   76 (214)
Q Consensus        46 ~I~APae~VW~-vi~Df~~l~~W~P~V~s~~v   76 (214)
                      .+++|+++|.. ++.|....+.|.+.+..+++
T Consensus        55 ~i~~~~~~v~~~l~~d~~~~~~Wd~~~~~~~~   86 (208)
T cd08868          55 VLDCPAEFLYNELVLNVESLPSWNPTVLECKI   86 (208)
T ss_pred             EEcCCHHHHHHHHHcCccccceecCcccceEE
Confidence            78999999975 66799999999999998864

This subfamily includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD1 (also known as StAR) and STARD3 (also known as metastatic lymph node 64/MLN64). The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. This STARD1-like subfamily has a high affinity for cholesterol. STARD1/StAR can reduce macrophage lipid content and inflammatory status. It plays an essential role in steroidogenic tissues: transferring the steroid precursor, cholesterol, from the outer to the inner mitochondrial membrane, across the aqueous space. Mutations in the gene encoding STARD1/StAR can cause lipid congenital adrenal hyperplasia (CAH), an autosomal recessive disorder characterized by a steroid synth

>cd08863 SRPBCC_DUF1857 DUF1857, an uncharacterized ligand-binding domain of the SRPBCC domain superfamily

Probab=90.16  E-value=9  Score=31.23  Aligned_cols=63  Identities=19%  Similarity=0.237  Sum_probs=45.3

Q ss_pred             CHHHHHHHHh-cCCCCCccCccceEEEE-ecCCCCCeEEEEEeeCCCCcceEEEEEEEEeCCCcEEEEEEEc
Q 028067           50 PVHLVWSLVR-RFDQPQKYKPFVSRCIV-QGDLQIGSVREVNVKSGLPATTSTERLELLDDEEHIFGMRIVG  119 (214)
Q Consensus        50 Pae~VW~vi~-Df~~l~~W~P~V~s~~v-eG~g~VGsvR~l~~~~G~p~~~v~ErL~~~D~~~~~~~Y~iv~  119 (214)
                      ..+++|.-|- .-.....+.|.+.+|++ +..+ ---.|.++++..    .++|++.. ++ ...+.|.+..
T Consensus        18 Tr~QlW~GL~~kar~p~~Fvp~i~~c~Vl~e~~-~~l~Rel~f~~~----~v~e~vt~-~~-~~~v~f~~~~   82 (141)
T cd08863          18 TRAQLWRGLVLRAREPQLFVPGLDRCEVLSESG-TVLERELTFGPA----KIRETVTL-EP-PSRVHFLQAD   82 (141)
T ss_pred             CHHHHHhHHHhhhCCchhcccccceEEEEecCC-CEEEEEEEECCc----eEEEEEEe-cC-CcEEEEEecC
Confidence            5689999775 56666789999999986 4222 134599999664    69999974 44 3667887755

Uncharacterized family of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins

>smart00234 START in StAR and phosphatidylcholine transfer protein

Probab=89.48  E-value=11  Score=31.05  Aligned_cols=144  Identities=11%  Similarity=-0.061  Sum_probs=73.1

Q ss_pred             eecCCHHH-HHHHHhcCCCCCccCccceEEEE-ecCCCCCeEEEEEeeCCC-Cc---ceEEE-EEEEEeCCCcEEEEEEE
Q 028067           46 HIKAPVHL-VWSLVRRFDQPQKYKPFVSRCIV-QGDLQIGSVREVNVKSGL-PA---TTSTE-RLELLDDEEHIFGMRIV  118 (214)
Q Consensus        46 ~I~APae~-VW~vi~Df~~l~~W~P~V~s~~v-eG~g~VGsvR~l~~~~G~-p~---~~v~E-rL~~~D~~~~~~~Y~iv  118 (214)
                      .+++++++ +=+++.|....+.|.+.+.++++ +-...-..+.+.....-. |.   ..+-- +....++....+..+-+
T Consensus        52 ~v~~~~~~~~~~~~~d~~~r~~Wd~~~~~~~~ie~~~~~~~i~~~~~~~~~~p~~~RDfv~~r~~~~~~~~~~vi~~~Sv  131 (206)
T smart00234       52 VVPMVCADLVEELMDDLRYRPEWDKNVAKAETLEVIDNGTVIYHYVSKFVAGPVSPRDFVFVRYWRELVDGSYAVVDVSV  131 (206)
T ss_pred             EEecChHHHHHHHHhcccchhhCchhcccEEEEEEECCCCeEEEEEEecccCcCCCCeEEEEEEEEEcCCCcEEEEEEEC
Confidence            67888887 55788899999999999998864 421111244443332221 21   11111 12222222233333222


Q ss_pred             cCcccceeeecccccc-ccCCCcceeeEEEEEEEeecCCCcceEEEEEEEEee-CCCCCCHHHHHHHHHHHHHHHHHHHH
Q 028067          119 GGDHRLKIIWNFSNFI-STSSSKLQNYSSIVTVHPEVIDGRPGTLVIESFVVD-VPDGNTKDETCYFVEALIKCNLKSLA  196 (214)
Q Consensus       119 ~g~~~~~~~~~~~~~~-~~~~~p~~~y~ati~v~p~~~~gs~~t~~~~s~~~~-~p~~~~~~~~~~~v~~~~~~gL~~L~  196 (214)
                      +  ++.        +- ...-.-...+.+-+.++|.+++.|.+++....-... .|.-.    +..++.......++.|+
T Consensus       132 ~--~~~--------~p~~~~~VR~~~~~~~~~i~p~~~~~t~vt~~~~~D~~G~iP~~l----vn~~~~~~~~~~~~~~~  197 (206)
T smart00234      132 T--HPT--------SPPTSGYVRAENLPSGLLIEPLGNGPSKVTWVSHADLKGWLPHWL----VRSLIKSGLAEFAKTWV  197 (206)
T ss_pred             C--CCC--------CCCCCCceEEEEeceEEEEEECCCCCeEEEEEEEEecCCCcccee----ehhhhhhhHHHHHHHHH
Confidence            2  111        00 001112356788889999876666666655432211 24433    33444555556677777


Q ss_pred             HHHhhhh
Q 028067          197 DVSEHLA  203 (214)
Q Consensus       197 ~~le~~a  203 (214)
                      +.+.+..
T Consensus       198 ~~~~~~~  204 (206)
T smart00234      198 ATLQKHC  204 (206)
T ss_pred             HHHHHHh
Confidence            7666543

putative lipid-binding domain in StAR and phosphatidylcholine transfer protein

>cd00177 START Lipid-binding START domain of mammalian STARD1-STARD15 and related proteins

Probab=89.12  E-value=9.9  Score=30.20  Aligned_cols=39  Identities=18%  Similarity=0.106  Sum_probs=32.6

Q ss_pred             CceEEEEEeeeecCCHHHHHHHHhcCCCCCccCccceEEEE
Q 028067           36 DHQCSSSLVKHIKAPVHLVWSLVRRFDQPQKYKPFVSRCIV   76 (214)
Q Consensus        36 ~~~ve~sI~~~I~APae~VW~vi~Df~~l~~W~P~V~s~~v   76 (214)
                      ...+....  ++++|+++||+++.|....+.|.+.+.++++
T Consensus        38 ~~~~k~~~--~i~~~~~~v~~~l~d~~~~~~w~~~~~~~~v   76 (193)
T cd00177          38 LKLLKAEG--VIPASPEQVFELLMDIDLRKKWDKNFEEFEV   76 (193)
T ss_pred             ceeEEEEE--EECCCHHHHHHHHhCCchhhchhhcceEEEE
Confidence            34455555  8899999999999999988999999998874

This family includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, and related domains, such as the START domain of the Arabidopsis homeobox protein GLABRA 2. The mammalian STARDs are grouped into 8 subfamilies. This family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. For some members of this family, specific lipids that bind in this pocket are known; these include cholesterol (STARD1/STARD3/ STARD4/STARD5), 25-hydroxycholesterol (STARD5), phosphatidylcholine (STARD2/ STARD7/STARD10), phosphatidylethanolamine (STARD10) and ceramides (STARD11). The START domain is found either alone or in association with other domains. Mammalian STARDs participate in the control of various cellular pro

>cd08911 START_STARD7-like Lipid-binding START domain of mammalian STARD7 and related proteins

Probab=88.17  E-value=15  Score=31.07  Aligned_cols=142  Identities=15%  Similarity=0.167  Sum_probs=77.5

Q ss_pred             ee-cCCHHHHHHHHhcCCCCCccCccceEEEE-ecCCCCCe-EEEEEeeCCCCc---ceEEEEEEEEeCCCcEE---EEE
Q 028067           46 HI-KAPVHLVWSLVRRFDQPQKYKPFVSRCIV-QGDLQIGS-VREVNVKSGLPA---TTSTERLELLDDEEHIF---GMR  116 (214)
Q Consensus        46 ~I-~APae~VW~vi~Df~~l~~W~P~V~s~~v-eG~g~VGs-vR~l~~~~G~p~---~~v~ErL~~~D~~~~~~---~Y~  116 (214)
                      ++ ++|++.+.+++.|...-++|.+.+.++++ +-....+. +-.+.+.-..|.   -.+--|-...|+++..+   .++
T Consensus        52 ~~~d~s~~~~~~~~~D~~~r~~Wd~~~~~~~~le~~~~~~~~i~y~~~~~P~P~s~RD~V~~r~~~~~~~~~~~~i~~~s  131 (207)
T cd08911          52 SFDDVTARDFLNVQLDLEYRKKWDATAVELEVVDEDPETGSEIIYWEMQWPKPFANRDYVYVRRYIIDEENKLIVIVSKA  131 (207)
T ss_pred             EEcCCCHHHHHHHHhCHHHHHHHHhhheeEEEEEccCCCCCEEEEEEEECCCCCCCccEEEEEEEEEcCCCCEEEEEEec
Confidence            45 99999999999999999999999998874 43221222 222222222221   23434444556554432   222


Q ss_pred             EEcCcccceeeeccccccccCCCcceeeEEEEEEEeec---CCCcceEEEEEEEEeeCCCCC-CHHHHHHHHHHHHHHHH
Q 028067          117 IVGGDHRLKIIWNFSNFISTSSSKLQNYSSIVTVHPEV---IDGRPGTLVIESFVVDVPDGN-TKDETCYFVEALIKCNL  192 (214)
Q Consensus       117 iv~g~~~~~~~~~~~~~~~~~~~p~~~y~ati~v~p~~---~~gs~~t~~~~s~~~~~p~~~-~~~~~~~~v~~~~~~gL  192 (214)
                      +.....+.          ..+-.-+..|.+.+.+.|.+   ++|+.  .+..++ .+ |.|. ..-.+..+.....-.-|
T Consensus       132 v~hp~~P~----------~~g~VRv~~~~~~~~i~p~~~~~~~~~~--~~~~~~-~d-PgG~IP~~lvN~~~~~~~~~~l  197 (207)
T cd08911         132 VQHPSYPE----------SPKKVRVEDYWSYMVIRPHKSFDEPGFE--FVLTYF-DN-PGVNIPSYITSWVAMSGMPDFL  197 (207)
T ss_pred             CCCCCCCC----------CCCCEEEEEeEEEEEEEeCCCCCCCCeE--EEEEEE-eC-CCCccCHHHHHHHHHhhccHHH
Confidence            22111111          00113367899999999873   35553  333333 24 4332 23345455566666667


Q ss_pred             HHHHHHHhh
Q 028067          193 KSLADVSEH  201 (214)
Q Consensus       193 ~~L~~~le~  201 (214)
                      ++|++.+.+
T Consensus       198 ~~l~~a~~~  206 (207)
T cd08911         198 ERLRNAALK  206 (207)
T ss_pred             HHHHHHHhc
Confidence            777776643

This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD7 (also known as gestational trophoblastic tumor 1/GTT1). It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. The gene encoding STARD7 is overexpressed in choriocarcinoma. STARD7 appears to be involved in the intracellular trafficking of phosphatidycholine (PtdCho) to mitochondria. STARD7 was shown to be surface active and to interact differentially with phospholipid monolayers, it showed a preference for phosphatidylserine, cholesterol, and phosphatidylglycerol.

>cd08870 START_STARD2_7-like Lipid-binding START domain of mammalian STARD2, -7, and related proteins

Probab=87.25  E-value=17  Score=30.65  Aligned_cols=141  Identities=13%  Similarity=0.065  Sum_probs=72.4

Q ss_pred             ee-cCCHHHHHHHHhcCCCCCccCccceEEEE-ecCCCCCeE-EEEEeeCCCCc---ceEEEEEEEEe-CCCcEEEEEEE
Q 028067           46 HI-KAPVHLVWSLVRRFDQPQKYKPFVSRCIV-QGDLQIGSV-REVNVKSGLPA---TTSTERLELLD-DEEHIFGMRIV  118 (214)
Q Consensus        46 ~I-~APae~VW~vi~Df~~l~~W~P~V~s~~v-eG~g~VGsv-R~l~~~~G~p~---~~v~ErL~~~D-~~~~~~~Y~iv  118 (214)
                      ++ ++|++++.+++.|....++|.+.+.++++ +-+..-|.. -++.+.---|.   -.+--|-...| +....+....+
T Consensus        57 ~~~~~s~~~~~~~l~D~~~r~~Wd~~~~~~~~le~~~~~~~~i~y~~~~~P~P~s~RD~V~~r~~~~~~~~~~~i~~~sv  136 (209)
T cd08870          57 VFEDCTPELLRDFYWDDEYRKKWDETVIEHETLEEDEKSGTEIVRWVKKFPFPLSDREYVIARRLWESDDRSYVCVTKGV  136 (209)
T ss_pred             EEcCCCHHHHHHHHcChhhHhhhhhheeeEEEEEecCCCCcEEEEEEEECCCcCCCceEEEEEEEEEcCCCEEEEEEeCC
Confidence            56 67999999999999988999999988864 422111221 11222111111   12222222233 22222222222


Q ss_pred             cCcccceeeecccccccc-CCCcceeeEEEEEEEee--cCCCcceEEEEEEEEeeCCCCCCHHHHHHHHHHHHHHHHHHH
Q 028067          119 GGDHRLKIIWNFSNFIST-SSSKLQNYSSIVTVHPE--VIDGRPGTLVIESFVVDVPDGNTKDETCYFVEALIKCNLKSL  195 (214)
Q Consensus       119 ~g~~~~~~~~~~~~~~~~-~~~p~~~y~ati~v~p~--~~~gs~~t~~~~s~~~~~p~~~~~~~~~~~v~~~~~~gL~~L  195 (214)
                      .  ++.         +.. ...-+..|.+.+.++|.  +++++.++++..   .++--....-.+..++....-.-|++|
T Consensus       137 ~--~~~---------~P~~~~vRv~~~~~~~~i~p~~~~~~~t~~~~~~~---~dp~G~IP~wlvN~~~~~~~~~~l~~l  202 (209)
T cd08870         137 P--YPS---------VPRSGRKRVDDYESSLVIRAVKGDGQGSACEVTYF---HNPDGGIPRELAKLAVKRGMPGFLKKL  202 (209)
T ss_pred             c--CCC---------CCCCCcEEEEEEEeEEEEEEecCCCCceEEEEEEE---ECCCCCCCHHHHHHHHHhhhHHHHHHH
Confidence            2  111         001 22346889999999998  545554444332   243223334445455555555566667


Q ss_pred             HHHHh
Q 028067          196 ADVSE  200 (214)
Q Consensus       196 ~~~le  200 (214)
                      ++.+.
T Consensus       203 ~~a~~  207 (209)
T cd08870         203 ENALR  207 (209)
T ss_pred             HHHHh
Confidence            66553

This subfamily includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD2 (also known as phosphatidylcholine transfer protein/PC-TP), and STARD7 (also known as gestational trophoblastic tumor 1/GTT1). The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD2 is a cytosolic phosphatidycholine (PtdCho) transfer protein, which traffics PtdCho, the most common class of phospholipids in eukaryotes, between membranes. It represents a minimal START domain structure. STARD2 plays roles in hepatic cholesterol metabolism, in the development of atherosclerosis, and may also have a mitochondrial function. The gene encoding STARD7 is overexpressed in choriocarcinoma. STARD7 appears to be invo

>cd08908 START_STARD12-like C-terminal lipid-binding START domain of mammalian STARD12 and related proteins, which also have an N-terminal Rho GTPase-activating protein (RhoGAP) domain

Probab=84.82  E-value=24  Score=30.24  Aligned_cols=146  Identities=10%  Similarity=0.016  Sum_probs=80.9

Q ss_pred             ceEEEEEeeeecCCHHHHHHHHhcCCCCCccCccceEEEE-e--cCCCCCeEEEEEeeCCCCc---ceEEEEEEEEeCCC
Q 028067           37 HQCSSSLVKHIKAPVHLVWSLVRRFDQPQKYKPFVSRCIV-Q--GDLQIGSVREVNVKSGLPA---TTSTERLELLDDEE  110 (214)
Q Consensus        37 ~~ve~sI~~~I~APae~VW~vi~Df~~l~~W~P~V~s~~v-e--G~g~VGsvR~l~~~~G~p~---~~v~ErL~~~D~~~  110 (214)
                      ..+..++  +|++++++|...+-|-  .+.|.+.+.++.+ +  ++..  -+-...+..--|.   ..+.-|.-..|.++
T Consensus        52 ~~~r~~~--~i~a~~~~vl~~lld~--~~~Wd~~~~e~~vIe~ld~~~--~I~Yy~~~~PwP~~~RD~V~~Rs~~~~~~~  125 (204)
T cd08908          52 RLWRTTI--EVPAAPEEILKRLLKE--QHLWDVDLLDSKVIEILDSQT--EIYQYVQNSMAPHPARDYVVLRTWRTNLPK  125 (204)
T ss_pred             EEEEEEE--EeCCCHHHHHHHHHhh--HHHHHHHhhheEeeEecCCCc--eEEEEEccCCCCCCCcEEEEEEEEEEeCCC
Confidence            3456666  8899999999999877  5789999988864 4  2221  1211111111111   12222233334444


Q ss_pred             cEEEEEEEcCcccceeeeccccccccCCCcceeeEEEEEEEeecCCCcceEEEEEEEEeeCCCCCCHHHHHHHHHHHHHH
Q 028067          111 HIFGMRIVGGDHRLKIIWNFSNFISTSSSKLQNYSSIVTVHPEVIDGRPGTLVIESFVVDVPDGNTKDETCYFVEALIKC  190 (214)
Q Consensus       111 ~~~~Y~iv~g~~~~~~~~~~~~~~~~~~~p~~~y~ati~v~p~~~~gs~~t~~~~s~~~~~p~~~~~~~~~~~v~~~~~~  190 (214)
                      ..+.-.+....+..         +.....-+..+.+-..++|.+.++|.+|.+..   .| |-|....-+.....-+...
T Consensus       126 g~~~I~~~Sv~h~~---------~P~~~VR~~~~~~~w~i~P~g~g~t~vtyi~~---~D-PgG~iP~W~~N~~g~~~~~  192 (204)
T cd08908         126 GACALLATSVDHDR---------APVAGVRVNVLLSRYLIEPCGSGKSKLTYMCR---ID-LRGHMPEWYTKSFGHLCAA  192 (204)
T ss_pred             CeEEEEEeecCccc---------CCcCceEEEEEeeEEEEEECCCCcEEEEEEEE---eC-CCCCCcHHHHhhHHHHHHH
Confidence            43433332222222         10111223455677788998766776666554   24 5555555555666888888


Q ss_pred             HHHHHHHHHhh
Q 028067          191 NLKSLADVSEH  201 (214)
Q Consensus       191 gL~~L~~~le~  201 (214)
                      -|..|++-+.+
T Consensus       193 ~~~~~r~sf~~  203 (204)
T cd08908         193 EVVKIRDSFSN  203 (204)
T ss_pred             HHHHHHhhccC
Confidence            88888887753

This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD12 (also known as DLC-1, Arhgap7, and p122-RhoGAP) and related proteins. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. Proteins belonging to this subgroup also have an N-terminal SAM (sterile alpha motif) domain and a RhoGAP domain, and have a SAM-RhoGAP-START domain organization. The precise function of the START domain in this subgroup is unclear.

>cd08914 START_STARD15-like Lipid-binding START domain of mammalian STARD15 and related proteins

Probab=81.96  E-value=36  Score=30.04  Aligned_cols=37  Identities=27%  Similarity=0.542  Sum_probs=32.6

Q ss_pred             eEEEEEeeeecCCHHHHHHHHhcCCCCCccCccceEEEE
Q 028067           38 QCSSSLVKHIKAPVHLVWSLVRRFDQPQKYKPFVSRCIV   76 (214)
Q Consensus        38 ~ve~sI~~~I~APae~VW~vi~Df~~l~~W~P~V~s~~v   76 (214)
                      .+..+.  .+++|++++.+++.|....++|.+.+.++++
T Consensus        79 ~fk~e~--~vdvs~~~l~~LL~D~~~r~~Wd~~~~e~~v  115 (236)
T cd08914          79 SVWVEK--HVKRPAHLAYRLLSDFTKRPLWDPHFLSCEV  115 (236)
T ss_pred             EEEEEE--EEcCCHHHHHHHHhChhhhchhHHhhceEEE
Confidence            455555  7799999999999999999999999999975

This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD15/ACOT12 (also known as cytoplasmic acetyl-CoA hydrolase/CACH, THEAL, and MGC105114) and related domains. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD15/ACOT12 is a type II acetyl-CoA thioesterase; it catalyzes the hydrolysis of acyl-CoAs to free fatty acid and CoASH. Rat CACH hydrolyzes acetyl-CoA to acetate and CoA. In addition to having a START domain, most proteins in this subgroup have two tandem copies of the hotdog domain. Human STARD15/ACOT12 may have roles in cholesterol metabolism and in beta-oxidation.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	214
3oqu_A	205	Crystal Structure Of Native Abscisic Acid Receptor		1e-77
3uqh_A	191	Crystal Strcuture Of Aba Receptor Pyl10 (Apo) Lengt		1e-70
3rt2_A	183	Crystal Structure Of Apo-Pyl10 Length = 183		1e-70
3rt0_C	183	Crystal Structure Of Pyl10-Hab1 Complex In The Abse		1e-69
3qrz_B	223	Crystal Structure Of Native Abscisic Acid Receptor		1e-41
3zvu_A	193	Structure Of The Pyr1 His60pro Mutant In Complex Wi		3e-38
3ujl_A	177	Crystal Structure Of Abscisic Acid Bound Pyl2 In Co		3e-37
3nj1_A	193	X-Ray Crystal Structure Of The Pyl2(V114i)-Pyrabact		3e-37
3nmh_A	178	Crystal Structure Of The Abscisic Receptor Pyl2 In		3e-37
3kdh_A	190	Structure Of Ligand-Free Pyl2 Length = 190		4e-37
3kaz_A	176	Crystal Structure Of Abscisic Acid Receptor Pyl2 Le		5e-37
3nj0_A	193	X-Ray Crystal Structure Of The Pyl2-Pyrabactin A Co		5e-37
3k90_A	193	The Abscisic Acid Receptor Pyr1 In Complex With Abs		7e-37
3k3k_A	211	Crystal Structure Of Dimeric Abscisic Acid (Aba) Re		1e-36
3nmp_A	178	Crystal Structure Of The Abscisic Receptor Pyl2 Mut		2e-36
3njo_A	194	X-Ray Crystal Structure Of The Pyr1-Pyrabactin A Co		9e-36
3oji_A	189	X-Ray Crystal Structure Of The Py13 -Pyrabactin Com		2e-31
4dsc_A	188	Complex Structure Of Abscisic Acid Receptor Pyl3 Wi		2e-31
4dsb_A	186	Complex Structure Of Abscisic Acid Receptor Pyl3 Wi		2e-31
3klx_A	209	Crystal Structure Of Native Abscisic Acid Receptor		3e-31
3kay_A	178	Crystal Structure Of Abscisic Acid Receptor Pyl1 Le		2e-30
3jrs_A	208	Crystal Structure Of (+)-Aba-Bound Pyl1 Length = 20		3e-30
3kdj_A	202	Complex Structure Of (+)-Aba-Bound Pyl1 And Abi1 Le		3e-30
3jrq_B	186	Crystal Structure Of (+)-aba-bound Pyl1 In Complex		3e-30

>pdb|3OQU|A Chain A, Crystal Structure Of Native Abscisic Acid Receptor Pyl9 With Aba Length = 205

Iteration: 1
 Score =  285 bits (729), Expect = 1e-77,   Method: Compositional matrix adjust.
 Identities = 139/197 (70%), Positives = 161/197 (81%), Gaps = 18/197 (9%)
Query: 14  GSGGFGKIEE-DYIKRHHKHDVHDHQCSSSLVKHIKAPVHLVWSLVRRFDQPQKYKPFVS 72
           G+  +G +E   Y++ HH+H   ++QC+S+LVKHIKAP+HLVWSLVRRFDQPQKYKPFVS
Sbjct: 26  GTAMYGGLETVQYVRTHHQHLCRENQCTSALVKHIKAPLHLVWSLVRRFDQPQKYKPFVS 85
Query: 73  RCIVQGDLQIGSVREVNVKSGLPATTSTERLELLDDEEHIFGMRIVGGDHRLKIIWNFSN 132
           RC V GD +IGS+REVNVKSGLPATTSTERLELLDDEEHI G++I+GGDHRLK       
Sbjct: 86  RCTVIGDPEIGSLREVNVKSGLPATTSTERLELLDDEEHILGIKIIGGDHRLK------- 138
Query: 133 FISTSSSKLQNYSSIVTVHPEVIDGRPGTLVIESFVVDVPDGNTKDETCYFVEALIKCNL 192
                     NYSSI+TVHPE+I+GR GT+VIESFVVDVP GNTKDETCYFVEALI+CNL
Sbjct: 139 ----------NYSSILTVHPEIIEGRAGTMVIESFVVDVPQGNTKDETCYFVEALIRCNL 188
Query: 193 KSLADVSEHLAVQDRTE 209
           KSLADVSE LA QD T+
Sbjct: 189 KSLADVSERLASQDITQ 205

>pdb|3UQH|A Chain A, Crystal Strcuture Of Aba Receptor Pyl10 (Apo) Length = 191

Iteration: 1
 Score =  262 bits (669), Expect = 1e-70,   Method: Compositional matrix adjust.
 Identities = 124/193 (64%), Positives = 154/193 (79%), Gaps = 18/193 (9%)
Query: 20  KIEEDYIKRHHKHDVHDHQCSSSLVKHIKAPVHLVWSLVRRFDQPQKYKPFVSRCIVQG- 78
           K+E +YIK+HH+H++ + QCSS+LVKHIKAP+HLVWS+VRRFD+PQKYKPF+SRC+VQG 
Sbjct: 8   KVESEYIKKHHRHELVESQCSSTLVKHIKAPLHLVWSIVRRFDEPQKYKPFISRCVVQGK 67
Query: 79  DLQIGSVREVNVKSGLPATTSTERLELLDDEEHIFGMRIVGGDHRLKIIWNFSNFISTSS 138
            L++GSVREV++KSGLPAT STE LE+LDD EHI G+RIVGGDHRLK             
Sbjct: 68  KLEVGSVREVDLKSGLPATKSTEVLEILDDNEHILGIRIVGGDHRLK------------- 114
Query: 139 SKLQNYSSIVTVHPEVIDGRPGTLVIESFVVDVPDGNTKDETCYFVEALIKCNLKSLADV 198
               NYSS +++H E IDG+ GTL IESFVVDVP+GNTK+ETC+FVEALI+CNL SLADV
Sbjct: 115 ----NYSSTISLHSETIDGKTGTLAIESFVVDVPEGNTKEETCFFVEALIQCNLNSLADV 170
Query: 199 SEHLAVQDRTEPI 211
           +E L  +   + I
Sbjct: 171 TERLQAESMEKKI 183

>pdb|3RT2|A Chain A, Crystal Structure Of Apo-Pyl10 Length = 183

Iteration: 1
 Score =  261 bits (668), Expect = 1e-70,   Method: Compositional matrix adjust.
 Identities = 124/193 (64%), Positives = 154/193 (79%), Gaps = 18/193 (9%)
Query: 20  KIEEDYIKRHHKHDVHDHQCSSSLVKHIKAPVHLVWSLVRRFDQPQKYKPFVSRCIVQG- 78
           K+E +YIK+HH+H++ + QCSS+LVKHIKAP+HLVWS+VRRFD+PQKYKPF+SRC+VQG 
Sbjct: 8   KVESEYIKKHHRHELVESQCSSTLVKHIKAPLHLVWSIVRRFDEPQKYKPFISRCVVQGK 67
Query: 79  DLQIGSVREVNVKSGLPATTSTERLELLDDEEHIFGMRIVGGDHRLKIIWNFSNFISTSS 138
            L++GSVREV++KSGLPAT STE LE+LDD EHI G+RIVGGDHRLK             
Sbjct: 68  KLEVGSVREVDLKSGLPATKSTEVLEILDDNEHILGIRIVGGDHRLK------------- 114
Query: 139 SKLQNYSSIVTVHPEVIDGRPGTLVIESFVVDVPDGNTKDETCYFVEALIKCNLKSLADV 198
               NYSS +++H E IDG+ GTL IESFVVDVP+GNTK+ETC+FVEALI+CNL SLADV
Sbjct: 115 ----NYSSTISLHSETIDGKTGTLAIESFVVDVPEGNTKEETCFFVEALIQCNLNSLADV 170
Query: 199 SEHLAVQDRTEPI 211
           +E L  +   + I
Sbjct: 171 TERLQAESMEKKI 183

>pdb|3RT0|C Chain C, Crystal Structure Of Pyl10-Hab1 Complex In The Absence Of Abscisic Acid (Aba) Length = 183

Iteration: 1
 Score =  258 bits (660), Expect = 1e-69,   Method: Compositional matrix adjust.
 Identities = 123/193 (63%), Positives = 153/193 (79%), Gaps = 18/193 (9%)
Query: 20  KIEEDYIKRHHKHDVHDHQCSSSLVKHIKAPVHLVWSLVRRFDQPQKYKPFVSRCIVQG- 78
           K+E +YIK+HH+H++ + QCSS+LVKHIKAP+HLVWS+VRRFD+PQKYKPF+SRC+VQG 
Sbjct: 8   KVESEYIKKHHRHELVESQCSSTLVKHIKAPLHLVWSIVRRFDEPQKYKPFISRCVVQGK 67
Query: 79  DLQIGSVREVNVKSGLPATTSTERLELLDDEEHIFGMRIVGGDHRLKIIWNFSNFISTSS 138
            L++GSVREV++KSGLPAT STE LE+LDD EHI G+RIVGGDHRLK             
Sbjct: 68  KLEVGSVREVDLKSGLPATKSTEVLEILDDNEHILGIRIVGGDHRLK------------- 114
Query: 139 SKLQNYSSIVTVHPEVIDGRPGTLVIESFVVDVPDGNTKDETCYFVEALIKCNLKSLADV 198
               NYSS +++H E IDG+ GTL IESFVVDVP+GNTK+ETC+FVEALI+ NL SLADV
Sbjct: 115 ----NYSSTISLHSETIDGKTGTLAIESFVVDVPEGNTKEETCFFVEALIQSNLNSLADV 170
Query: 199 SEHLAVQDRTEPI 211
           +E L  +   + I
Sbjct: 171 TERLQAESMEKKI 183

>pdb|3ZVU|A Chain A, Structure Of The Pyr1 His60pro Mutant In Complex With The Hab1 Phosphatase And Abscisic Acid Length = 193

Iteration: 1
 Score =  154 bits (389), Expect = 3e-38,   Method: Compositional matrix adjust.
 Identities = 79/183 (43%), Positives = 114/183 (62%), Gaps = 19/183 (10%)
Query: 23  EDYIKRHHKHDVHDHQCSSSLVKHIKAPVHLVWSLVRRFDQPQKYKPFVSRCIVQG--DL 80
           ++ I   H + +    CSS   + I AP  LVWS+VRRFD+PQ YKPF+  C V+   ++
Sbjct: 16  KNSIAEFHTYQLDPGSCSSLHAQRIHAPPELVWSIVRRFDKPQTYKPFIKSCSVEQNFEM 75
Query: 81  QIGSVREVNVKSGLPATTSTERLELLDDEEHIFGMRIVGGDHRLKIIWNFSNFISTSSSK 140
           ++G  R+V V SGLPA TSTERL++LDDE  + G  I+GG+HRL                
Sbjct: 76  RVGCTRDVIVISGLPANTSTERLDILDDERRVTGFSIIGGEHRLT--------------- 120
Query: 141 LQNYSSIVTVHPEVIDGRPGTLVIESFVVDVPDGNTKDETCYFVEALIKCNLKSLADVSE 200
             NY S+ TVH    + R  T+V+ES+VVD+P+GN++D+T  F + ++K NL+ LA V+E
Sbjct: 121 --NYKSVTTVHRFEKENRIWTVVLESYVVDMPEGNSEDDTRMFADTVVKLNLQKLATVAE 178
Query: 201 HLA 203
            +A
Sbjct: 179 AMA 181

>pdb|3UJL|A Chain A, Crystal Structure Of Abscisic Acid Bound Pyl2 In Complex With Type 2c Protein Phosphatase Abi2 Length = 177

Iteration: 1
 Score =  151 bits (381), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 80/195 (41%), Positives = 119/195 (61%), Gaps = 22/195 (11%)
Query: 16  GGFGKIEEDYIKRHHKHDVHDHQCSSSLVKHIKAPVHLVWSLVRRFDQPQKYKPFVSRC- 74
           G   K  E  IK +H+ +     C+S + + I AP  +VW L+RRFD P++YK FV RC 
Sbjct: 1   GSEQKTLEPVIKTYHQFEPDPTTCTSLITQRIHAPASVVWPLIRRFDNPERYKHFVKRCR 60
Query: 75  IVQGDLQIGSVREVNVKSGLPATTSTERLELLDDEEHIFGMRIVGGDHRLKIIWNFSNFI 134
           ++ GD  +GSVREV V SGLPA+TSTERLE +DD+  +   R+VGG+HRLK         
Sbjct: 61  LISGDGDVGSVREVTVISGLPASTSTERLEFVDDDHRVLSFRVVGGEHRLK--------- 111
Query: 135 STSSSKLQNYSSIVTVHPEVID---GRPGTLVIESFVVDVPDGNTKDETCYFVEALIKCN 191
                   NY S+ +V+ E ++   G+  T+V+ES+ VD+P+GNT+++T  FV+ ++K N
Sbjct: 112 --------NYKSVTSVN-EFLNQDSGKVYTVVLESYTVDIPEGNTEEDTKMFVDTVVKLN 162
Query: 192 LKSLADVSEHLAVQD 206
           L+ L   +    + D
Sbjct: 163 LQKLGVAATSAPMHD 177

>pdb|3NJ1|A Chain A, X-Ray Crystal Structure Of The Pyl2(V114i)-Pyrabactin A Complex Length = 193

Iteration: 1
 Score =  151 bits (381), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 80/191 (41%), Positives = 118/191 (61%), Gaps = 22/191 (11%)
Query: 20  KIEEDYIKRHHKHDVHDHQCSSSLVKHIKAPVHLVWSLVRRFDQPQKYKPFVSRC-IVQG 78
           K  E  IK +H+ +     C+S + + I AP  +VW L+RRFD P++YK FV RC ++ G
Sbjct: 19  KTLEPVIKTYHQFEPDPTTCTSLITQRIHAPASVVWPLIRRFDNPERYKHFVKRCRLISG 78
Query: 79  DLQIGSVREVNVKSGLPATTSTERLELLDDEEHIFGMRIVGGDHRLKIIWNFSNFISTSS 138
           D  +GSVREV V SGLPA+TSTERLE +DD+  +   RIVGG+HRLK             
Sbjct: 79  DGDVGSVREVTVISGLPASTSTERLEFVDDDHRVLSFRIVGGEHRLK------------- 125
Query: 139 SKLQNYSSIVTVHPEVID---GRPGTLVIESFVVDVPDGNTKDETCYFVEALIKCNLKSL 195
               NY S+ +V+ E ++   G+  T+V+ES+ VD+P+GNT+++T  FV+ ++K NL+ L
Sbjct: 126 ----NYKSVTSVN-EFLNQDSGKVYTVVLESYTVDIPEGNTEEDTKMFVDTVVKLNLQKL 180
Query: 196 ADVSEHLAVQD 206
              +    + D
Sbjct: 181 GVAATSAPMHD 191

>pdb|3NMH|A Chain A, Crystal Structure Of The Abscisic Receptor Pyl2 In Complex With Pyrabactin Length = 178

Iteration: 1
 Score =  150 bits (380), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 80/195 (41%), Positives = 119/195 (61%), Gaps = 22/195 (11%)
Query: 16  GGFGKIEEDYIKRHHKHDVHDHQCSSSLVKHIKAPVHLVWSLVRRFDQPQKYKPFVSRC- 74
           G   K  E  IK +H+ +     C+S + + I AP  +VW L+RRFD P++YK FV RC 
Sbjct: 1   GSEQKTLEPVIKTYHQFEPDPTTCTSLITQRIHAPASVVWPLIRRFDNPERYKHFVKRCR 60
Query: 75  IVQGDLQIGSVREVNVKSGLPATTSTERLELLDDEEHIFGMRIVGGDHRLKIIWNFSNFI 134
           ++ GD  +GSVREV V SGLPA+TSTERLE +DD+  +   R+VGG+HRLK         
Sbjct: 61  LISGDGDVGSVREVTVISGLPASTSTERLEFVDDDHRVLSFRVVGGEHRLK--------- 111
Query: 135 STSSSKLQNYSSIVTVHPEVID---GRPGTLVIESFVVDVPDGNTKDETCYFVEALIKCN 191
                   NY S+ +V+ E ++   G+  T+V+ES+ VD+P+GNT+++T  FV+ ++K N
Sbjct: 112 --------NYKSVTSVN-EFLNQDSGKVYTVVLESYTVDIPEGNTEEDTKMFVDTVVKLN 162
Query: 192 LKSLADVSEHLAVQD 206
           L+ L   +    + D
Sbjct: 163 LQKLGVAATSAPMHD 177

>pdb|3KDH|A Chain A, Structure Of Ligand-Free Pyl2 Length = 190

Iteration: 1
 Score =  150 bits (380), Expect = 4e-37,   Method: Compositional matrix adjust.
 Identities = 79/191 (41%), Positives = 118/191 (61%), Gaps = 22/191 (11%)
Query: 20  KIEEDYIKRHHKHDVHDHQCSSSLVKHIKAPVHLVWSLVRRFDQPQKYKPFVSRC-IVQG 78
           K  E  IK +H+ +     C+S + + I AP  +VW L+RRFD P++YK FV RC ++ G
Sbjct: 16  KTLEPVIKTYHQFEPDPTTCTSLITQRIHAPASVVWPLIRRFDNPERYKHFVKRCRLISG 75
Query: 79  DLQIGSVREVNVKSGLPATTSTERLELLDDEEHIFGMRIVGGDHRLKIIWNFSNFISTSS 138
           D  +GSVREV V SGLPA+TSTERLE +DD+  +   R+VGG+HRLK             
Sbjct: 76  DGDVGSVREVTVISGLPASTSTERLEFVDDDHRVLSFRVVGGEHRLK------------- 122
Query: 139 SKLQNYSSIVTVHPEVID---GRPGTLVIESFVVDVPDGNTKDETCYFVEALIKCNLKSL 195
               NY S+ +V+ E ++   G+  T+V+ES+ VD+P+GNT+++T  FV+ ++K NL+ L
Sbjct: 123 ----NYKSVTSVN-EFLNQDSGKVYTVVLESYTVDIPEGNTEEDTKMFVDTVVKLNLQKL 177
Query: 196 ADVSEHLAVQD 206
              +    + D
Sbjct: 178 GVAATSAPMHD 188

>pdb|3KAZ|A Chain A, Crystal Structure Of Abscisic Acid Receptor Pyl2 Length = 176

Iteration: 1
 Score =  150 bits (379), Expect = 5e-37,   Method: Compositional matrix adjust.
 Identities = 79/191 (41%), Positives = 118/191 (61%), Gaps = 22/191 (11%)
Query: 20  KIEEDYIKRHHKHDVHDHQCSSSLVKHIKAPVHLVWSLVRRFDQPQKYKPFVSRC-IVQG 78
           K  E  IK +H+ +     C+S + + I AP  +VW L+RRFD P++YK FV RC ++ G
Sbjct: 4   KTLEPVIKTYHQFEPDPTTCTSLITQRIHAPASVVWPLIRRFDNPERYKHFVKRCRLISG 63
Query: 79  DLQIGSVREVNVKSGLPATTSTERLELLDDEEHIFGMRIVGGDHRLKIIWNFSNFISTSS 138
           D  +GSVREV V SGLPA+TSTERLE +DD+  +   R+VGG+HRLK             
Sbjct: 64  DGDVGSVREVTVISGLPASTSTERLEFVDDDHRVLSFRVVGGEHRLK------------- 110
Query: 139 SKLQNYSSIVTVHPEVID---GRPGTLVIESFVVDVPDGNTKDETCYFVEALIKCNLKSL 195
               NY S+ +V+ E ++   G+  T+V+ES+ VD+P+GNT+++T  FV+ ++K NL+ L
Sbjct: 111 ----NYKSVTSVN-EFLNQDSGKVYTVVLESYTVDIPEGNTEEDTKMFVDTVVKLNLQKL 165
Query: 196 ADVSEHLAVQD 206
              +    + D
Sbjct: 166 GVAATSAPMHD 176

>pdb|3NJ0|A Chain A, X-Ray Crystal Structure Of The Pyl2-Pyrabactin A Complex Length = 193

Iteration: 1
 Score =  150 bits (379), Expect = 5e-37,   Method: Compositional matrix adjust.
 Identities = 79/191 (41%), Positives = 118/191 (61%), Gaps = 22/191 (11%)
Query: 20  KIEEDYIKRHHKHDVHDHQCSSSLVKHIKAPVHLVWSLVRRFDQPQKYKPFVSRC-IVQG 78
           K  E  IK +H+ +     C+S + + I AP  +VW L+RRFD P++YK FV RC ++ G
Sbjct: 19  KTLEPVIKTYHQFEPDPTTCTSLITQRIHAPASVVWPLIRRFDNPERYKHFVKRCRLISG 78
Query: 79  DLQIGSVREVNVKSGLPATTSTERLELLDDEEHIFGMRIVGGDHRLKIIWNFSNFISTSS 138
           D  +GSVREV V SGLPA+TSTERLE +DD+  +   R+VGG+HRLK             
Sbjct: 79  DGDVGSVREVTVISGLPASTSTERLEFVDDDHRVLSFRVVGGEHRLK------------- 125
Query: 139 SKLQNYSSIVTVHPEVID---GRPGTLVIESFVVDVPDGNTKDETCYFVEALIKCNLKSL 195
               NY S+ +V+ E ++   G+  T+V+ES+ VD+P+GNT+++T  FV+ ++K NL+ L
Sbjct: 126 ----NYKSVTSVN-EFLNQDSGKVYTVVLESYTVDIPEGNTEEDTKMFVDTVVKLNLQKL 180
Query: 196 ADVSEHLAVQD 206
              +    + D
Sbjct: 181 GVAATSAPMHD 191

>pdb|3K90|A Chain A, The Abscisic Acid Receptor Pyr1 In Complex With Abscisic Acid Length = 193

Iteration: 1
 Score =  150 bits (378), Expect = 7e-37,   Method: Compositional matrix adjust.
 Identities = 78/183 (42%), Positives = 113/183 (61%), Gaps = 19/183 (10%)
Query: 23  EDYIKRHHKHDVHDHQCSSSLVKHIKAPVHLVWSLVRRFDQPQKYKPFVSRCIVQG--DL 80
           ++ I   H + +    CSS   + I AP  LVWS+VRRFD+PQ YK F+  C V+   ++
Sbjct: 16  KNSIAEFHTYQLDPGSCSSLHAQRIHAPPELVWSIVRRFDKPQTYKHFIKSCSVEQNFEM 75
Query: 81  QIGSVREVNVKSGLPATTSTERLELLDDEEHIFGMRIVGGDHRLKIIWNFSNFISTSSSK 140
           ++G  R+V V SGLPA TSTERL++LDDE  + G  I+GG+HRL                
Sbjct: 76  RVGCTRDVIVISGLPANTSTERLDILDDERRVTGFSIIGGEHRLT--------------- 120
Query: 141 LQNYSSIVTVHPEVIDGRPGTLVIESFVVDVPDGNTKDETCYFVEALIKCNLKSLADVSE 200
             NY S+ TVH    + R  T+V+ES+VVD+P+GN++D+T  F + ++K NL+ LA V+E
Sbjct: 121 --NYKSVTTVHRFEKENRIWTVVLESYVVDMPEGNSEDDTRMFADTVVKLNLQKLATVAE 178
Query: 201 HLA 203
            +A
Sbjct: 179 AMA 181

>pdb|3K3K|A Chain A, Crystal Structure Of Dimeric Abscisic Acid (Aba) Receptor Pyrabactin Resistance 1 (Pyr1) With Aba-Bound Closed-Lid And Aba-Free Open-Lid Subunits Length = 211

Iteration: 1
 Score =  149 bits (376), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 78/183 (42%), Positives = 113/183 (61%), Gaps = 19/183 (10%)
Query: 23  EDYIKRHHKHDVHDHQCSSSLVKHIKAPVHLVWSLVRRFDQPQKYKPFVSRCIVQG--DL 80
           ++ I   H + +    CSS   + I AP  LVWS+VRRFD+PQ YK F+  C V+   ++
Sbjct: 34  KNSIAEFHTYQLDPGSCSSLHAQRIHAPPELVWSIVRRFDKPQTYKHFIKSCSVEQNFEM 93
Query: 81  QIGSVREVNVKSGLPATTSTERLELLDDEEHIFGMRIVGGDHRLKIIWNFSNFISTSSSK 140
           ++G  R+V V SGLPA TSTERL++LDDE  + G  I+GG+HRL                
Sbjct: 94  RVGCTRDVIVISGLPANTSTERLDILDDERRVTGFSIIGGEHRLT--------------- 138
Query: 141 LQNYSSIVTVHPEVIDGRPGTLVIESFVVDVPDGNTKDETCYFVEALIKCNLKSLADVSE 200
             NY S+ TVH    + R  T+V+ES+VVD+P+GN++D+T  F + ++K NL+ LA V+E
Sbjct: 139 --NYKSVTTVHRFEKENRIWTVVLESYVVDMPEGNSEDDTRMFADTVVKLNLQKLATVAE 196
Query: 201 HLA 203
            +A
Sbjct: 197 AMA 199

>pdb|3NMP|A Chain A, Crystal Structure Of The Abscisic Receptor Pyl2 Mutant A93f In Complex With Pyrabactin Length = 178

Iteration: 1
 Score =  148 bits (373), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 79/195 (40%), Positives = 118/195 (60%), Gaps = 22/195 (11%)
Query: 16  GGFGKIEEDYIKRHHKHDVHDHQCSSSLVKHIKAPVHLVWSLVRRFDQPQKYKPFVSRC- 74
           G   K  E  IK +H+ +     C+S + + I AP  +VW L+RRFD P++YK FV RC 
Sbjct: 1   GSEQKTLEPVIKTYHQFEPDPTTCTSLITQRIHAPASVVWPLIRRFDNPERYKHFVKRCR 60
Query: 75  IVQGDLQIGSVREVNVKSGLPATTSTERLELLDDEEHIFGMRIVGGDHRLKIIWNFSNFI 134
           ++ GD  +GSVREV V SGLP +TSTERLE +DD+  +   R+VGG+HRLK         
Sbjct: 61  LISGDGDVGSVREVTVISGLPFSTSTERLEFVDDDHRVLSFRVVGGEHRLK--------- 111
Query: 135 STSSSKLQNYSSIVTVHPEVID---GRPGTLVIESFVVDVPDGNTKDETCYFVEALIKCN 191
                   NY S+ +V+ E ++   G+  T+V+ES+ VD+P+GNT+++T  FV+ ++K N
Sbjct: 112 --------NYKSVTSVN-EFLNQDSGKVYTVVLESYTVDIPEGNTEEDTKMFVDTVVKLN 162
Query: 192 LKSLADVSEHLAVQD 206
           L+ L   +    + D
Sbjct: 163 LQKLGVAATSAPMHD 177

>pdb|3NJO|A Chain A, X-Ray Crystal Structure Of The Pyr1-Pyrabactin A Complex Length = 194

Iteration: 1
 Score =  146 bits (368), Expect = 9e-36,   Method: Compositional matrix adjust.
 Identities = 77/183 (42%), Positives = 112/183 (61%), Gaps = 19/183 (10%)
Query: 23  EDYIKRHHKHDVHDHQCSSSLVKHIKAPVHLVWSLVRRFDQPQKYKPFVSRCIVQG--DL 80
           ++ I   H + +    CSS   + I AP  LVWS+VRRFD+PQ YK F+  C V+   ++
Sbjct: 17  KNSIAEFHTYQLDPGSCSSLHAQRIHAPPELVWSIVRRFDKPQTYKHFIKSCSVEQNFEM 76
Query: 81  QIGSVREVNVKSGLPATTSTERLELLDDEEHIFGMRIVGGDHRLKIIWNFSNFISTSSSK 140
           ++G  R+V V SGL A TSTERL++LDDE  + G  I+GG+HRL                
Sbjct: 77  RVGCTRDVIVISGLSANTSTERLDILDDERRVTGFSIIGGEHRLT--------------- 121
Query: 141 LQNYSSIVTVHPEVIDGRPGTLVIESFVVDVPDGNTKDETCYFVEALIKCNLKSLADVSE 200
             NY S+ TVH    + R  T+V+ES+VVD+P+GN++D+T  F + ++K NL+ LA V+E
Sbjct: 122 --NYKSVTTVHRFEKENRIWTVVLESYVVDMPEGNSEDDTRMFADTVVKLNLQKLATVAE 179
Query: 201 HLA 203
            +A
Sbjct: 180 AMA 182

>pdb|3OJI|A Chain A, X-Ray Crystal Structure Of The Py13 -Pyrabactin Complex Length = 189

Iteration: 1
 Score =  132 bits (331), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 67/185 (36%), Positives = 109/185 (58%), Gaps = 28/185 (15%)
Query: 26  IKRHHKHDVHDHQCSSSLVKHIKAPVHLVWSLVRRFDQPQKYKPFVSRCIVQ------GD 79
           I+ HH      + C+S +   + AP H +W  VR F  P KYK F+  C ++       +
Sbjct: 17  IRTHHTFPRSPNTCTSLIAHRVDAPAHAIWRFVRDFANPNKYKHFIKSCTIRVNGNGIKE 76
Query: 80  LQIGSVREVNVKSGLPATTSTERLELLDDEEHIFGMRIVGGDHRLKIIWNFSNFISTSSS 139
           +++G++REV+V SGLPA+TS E LE+LD+E+ I   R++GG+HR                
Sbjct: 77  IKVGTIREVSVVSGLPASTSVEILEVLDEEKRILSFRVLGGEHR---------------- 120
Query: 140 KLQNYSSIVTVHPEVI-----DGRPGTLVIESFVVDVPDGNTKDETCYFVEALIKCNLKS 194
            L NY S+ +V+  V+       R  ++V+ES++VD+P GNT+++T  FV+ ++K NL++
Sbjct: 121 -LNNYRSVTSVNEFVVLEKDKKKRVYSVVLESYIVDIPQGNTEEDTRMFVDTVVKSNLQN 179
Query: 195 LADVS 199
           LA +S
Sbjct: 180 LAVIS 184

>pdb|4DSC|A Chain A, Complex Structure Of Abscisic Acid Receptor Pyl3 With (+)-Aba In Spacegroup Of H32 At 1.95a Length = 188

Iteration: 1
 Score =  131 bits (330), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 67/185 (36%), Positives = 109/185 (58%), Gaps = 28/185 (15%)
Query: 26  IKRHHKHDVHDHQCSSSLVKHIKAPVHLVWSLVRRFDQPQKYKPFVSRCIVQ------GD 79
           I+ HH      + C+S +   + AP H +W  VR F  P KYK F+  C ++       +
Sbjct: 16  IRTHHTFPRSPNTCTSLIAHRVDAPAHAIWRFVRDFANPNKYKHFIKSCTIRVNGNGIKE 75
Query: 80  LQIGSVREVNVKSGLPATTSTERLELLDDEEHIFGMRIVGGDHRLKIIWNFSNFISTSSS 139
           +++G++REV+V SGLPA+TS E LE+LD+E+ I   R++GG+HR                
Sbjct: 76  IKVGTIREVSVVSGLPASTSVEILEVLDEEKRILSFRVLGGEHR---------------- 119
Query: 140 KLQNYSSIVTVHPEVI-----DGRPGTLVIESFVVDVPDGNTKDETCYFVEALIKCNLKS 194
            L NY S+ +V+  V+       R  ++V+ES++VD+P GNT+++T  FV+ ++K NL++
Sbjct: 120 -LNNYRSVTSVNEFVVLEKDKKKRVYSVVLESYIVDIPQGNTEEDTRMFVDTVVKSNLQN 178
Query: 195 LADVS 199
           LA +S
Sbjct: 179 LAVIS 183

>pdb|4DSB|A Chain A, Complex Structure Of Abscisic Acid Receptor Pyl3 With (+)-Aba In Spacegroup Of I 212121 At 2.70a Length = 186

Iteration: 1
 Score =  131 bits (330), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 67/185 (36%), Positives = 109/185 (58%), Gaps = 28/185 (15%)
Query: 26  IKRHHKHDVHDHQCSSSLVKHIKAPVHLVWSLVRRFDQPQKYKPFVSRCIVQ------GD 79
           I+ HH      + C+S +   + AP H +W  VR F  P KYK F+  C ++       +
Sbjct: 14  IRTHHTFPRSPNTCTSLIAHRVDAPAHAIWRFVRDFANPNKYKHFIKSCTIRVNGNGIKE 73
Query: 80  LQIGSVREVNVKSGLPATTSTERLELLDDEEHIFGMRIVGGDHRLKIIWNFSNFISTSSS 139
           +++G++REV+V SGLPA+TS E LE+LD+E+ I   R++GG+HR                
Sbjct: 74  IKVGTIREVSVVSGLPASTSVEILEVLDEEKRILSFRVLGGEHR---------------- 117
Query: 140 KLQNYSSIVTVHPEVI-----DGRPGTLVIESFVVDVPDGNTKDETCYFVEALIKCNLKS 194
            L NY S+ +V+  V+       R  ++V+ES++VD+P GNT+++T  FV+ ++K NL++
Sbjct: 118 -LNNYRSVTSVNEFVVLEKDKKKRVYSVVLESYIVDIPQGNTEEDTRMFVDTVVKSNLQN 176
Query: 195 LADVS 199
           LA +S
Sbjct: 177 LAVIS 181

>pdb|3KLX|A Chain A, Crystal Structure Of Native Abscisic Acid Receptor Pyl3 Length = 209

Iteration: 1
 Score =  131 bits (329), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 67/185 (36%), Positives = 109/185 (58%), Gaps = 28/185 (15%)
Query: 26  IKRHHKHDVHDHQCSSSLVKHIKAPVHLVWSLVRRFDQPQKYKPFVSRCIVQ------GD 79
           I+ HH      + C+S +   + AP H +W  VR F  P KYK F+  C ++       +
Sbjct: 37  IRTHHTFPRSPNTCTSLIAHRVDAPAHAIWRFVRDFANPNKYKHFIKSCTIRVNGNGIKE 96
Query: 80  LQIGSVREVNVKSGLPATTSTERLELLDDEEHIFGMRIVGGDHRLKIIWNFSNFISTSSS 139
           +++G++REV+V SGLPA+TS E LE+LD+E+ I   R++GG+HR                
Sbjct: 97  IKVGTIREVSVVSGLPASTSVEILEVLDEEKRILSFRVLGGEHR---------------- 140
Query: 140 KLQNYSSIVTVHPEVI-----DGRPGTLVIESFVVDVPDGNTKDETCYFVEALIKCNLKS 194
            L NY S+ +V+  V+       R  ++V+ES++VD+P GNT+++T  FV+ ++K NL++
Sbjct: 141 -LNNYRSVTSVNEFVVLEKDKKKRVYSVVLESYIVDIPQGNTEEDTRMFVDTVVKSNLQN 199
Query: 195 LADVS 199
           LA +S
Sbjct: 200 LAVIS 204

>pdb|3KAY|A Chain A, Crystal Structure Of Abscisic Acid Receptor Pyl1 Length = 178

Iteration: 1
 Score =  128 bits (322), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 78/182 (42%), Positives = 112/182 (61%), Gaps = 22/182 (12%)
Query: 26  IKRHHKHDVHDHQCSSSLVKHIKAPVHLVWSLVRRFDQPQKYKPFVSRCIVQGD--LQIG 83
           I   H + + + +CSS L + I AP   VWS+VRRFD+PQ YK F+  C V  D  +++G
Sbjct: 11  IAEFHTYQLGNGRCSSLLAQRIHAPPETVWSVVRRFDRPQIYKHFIKSCNVSEDFEMRVG 70
Query: 84  SVREVNVKSGLPATTSTERLELLDDEEHIFGMRIVGGDHRLKIIWNFSNFISTSSSKLQN 143
             R+VNV SGLPA TS ERL+LLDD+  + G  I GG+HRL+                 N
Sbjct: 71  CTRDVNVISGLPANTSRERLDLLDDDRRVTGFSITGGEHRLR-----------------N 113
Query: 144 YSSIVTVH---PEVIDGRPGTLVIESFVVDVPDGNTKDETCYFVEALIKCNLKSLADVSE 200
           Y S+ TVH    E  + R  T+V+ES+VVDVP+GN++++T  F + +I+ NL+ LA ++E
Sbjct: 114 YKSVTTVHRFEKEEEEERIWTVVLESYVVDVPEGNSEEDTRLFADTVIRLNLQKLASITE 173
Query: 201 HL 202
            +
Sbjct: 174 AM 175

>pdb|3JRS|A Chain A, Crystal Structure Of (+)-Aba-Bound Pyl1 Length = 208

Iteration: 1
 Score =  128 bits (321), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 78/182 (42%), Positives = 112/182 (61%), Gaps = 22/182 (12%)
Query: 26  IKRHHKHDVHDHQCSSSLVKHIKAPVHLVWSLVRRFDQPQKYKPFVSRCIVQGD--LQIG 83
           I   H + + + +CSS L + I AP   VWS+VRRFD+PQ YK F+  C V  D  +++G
Sbjct: 41  IAEFHTYQLGNGRCSSLLAQRIHAPPETVWSVVRRFDRPQIYKHFIKSCNVSEDFEMRVG 100
Query: 84  SVREVNVKSGLPATTSTERLELLDDEEHIFGMRIVGGDHRLKIIWNFSNFISTSSSKLQN 143
             R+VNV SGLPA TS ERL+LLDD+  + G  I GG+HRL+                 N
Sbjct: 101 CTRDVNVISGLPANTSRERLDLLDDDRRVTGFSITGGEHRLR-----------------N 143
Query: 144 YSSIVTVH---PEVIDGRPGTLVIESFVVDVPDGNTKDETCYFVEALIKCNLKSLADVSE 200
           Y S+ TVH    E  + R  T+V+ES+VVDVP+GN++++T  F + +I+ NL+ LA ++E
Sbjct: 144 YKSVTTVHRFEKEEEEERIWTVVLESYVVDVPEGNSEEDTRLFADTVIRLNLQKLASITE 203
Query: 201 HL 202
            +
Sbjct: 204 AM 205

>pdb|3KDJ|A Chain A, Complex Structure Of (+)-Aba-Bound Pyl1 And Abi1 Length = 202

Iteration: 1
 Score =  128 bits (321), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 78/182 (42%), Positives = 112/182 (61%), Gaps = 22/182 (12%)
Query: 26  IKRHHKHDVHDHQCSSSLVKHIKAPVHLVWSLVRRFDQPQKYKPFVSRCIVQGD--LQIG 83
           I   H + + + +CSS L + I AP   VWS+VRRFD+PQ YK F+  C V  D  +++G
Sbjct: 25  IAEFHTYQLGNGRCSSLLAQRIHAPPETVWSVVRRFDRPQIYKHFIKSCNVSEDFEMRVG 84
Query: 84  SVREVNVKSGLPATTSTERLELLDDEEHIFGMRIVGGDHRLKIIWNFSNFISTSSSKLQN 143
             R+VNV SGLPA TS ERL+LLDD+  + G  I GG+HRL+                 N
Sbjct: 85  CTRDVNVISGLPANTSRERLDLLDDDRRVTGFSITGGEHRLR-----------------N 127
Query: 144 YSSIVTVH---PEVIDGRPGTLVIESFVVDVPDGNTKDETCYFVEALIKCNLKSLADVSE 200
           Y S+ TVH    E  + R  T+V+ES+VVDVP+GN++++T  F + +I+ NL+ LA ++E
Sbjct: 128 YKSVTTVHRFEKEEEEERIWTVVLESYVVDVPEGNSEEDTRLFADTVIRLNLQKLASITE 187
Query: 201 HL 202
            +
Sbjct: 188 AM 189

>pdb|3JRQ|B Chain B, Crystal Structure Of (+)-aba-bound Pyl1 In Complex With Abi1 Length = 186

Iteration: 1
 Score =  127 bits (320), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 78/182 (42%), Positives = 112/182 (61%), Gaps = 22/182 (12%)
Query: 26  IKRHHKHDVHDHQCSSSLVKHIKAPVHLVWSLVRRFDQPQKYKPFVSRCIVQGD--LQIG 83
           I   H + + + +CSS L + I AP   VWS+VRRFD+PQ YK F+  C V  D  +++G
Sbjct: 20  IAEFHTYQLGNGRCSSLLAQRIHAPPETVWSVVRRFDRPQIYKHFIKSCNVSEDFEMRVG 79
Query: 84  SVREVNVKSGLPATTSTERLELLDDEEHIFGMRIVGGDHRLKIIWNFSNFISTSSSKLQN 143
             R+VNV SGLPA TS ERL+LLDD+  + G  I GG+HRL+                 N
Sbjct: 80  CTRDVNVISGLPANTSRERLDLLDDDRRVTGFSITGGEHRLR-----------------N 122
Query: 144 YSSIVTVH---PEVIDGRPGTLVIESFVVDVPDGNTKDETCYFVEALIKCNLKSLADVSE 200
           Y S+ TVH    E  + R  T+V+ES+VVDVP+GN++++T  F + +I+ NL+ LA ++E
Sbjct: 123 YKSVTTVHRFEKEEEEERIWTVVLESYVVDVPEGNSEEDTRLFADTVIRLNLQKLASITE 182
Query: 201 HL 202
            +
Sbjct: 183 AM 184

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	214
3k3k_A	211	Abscisic acid receptor PYR1; ABA receptor, plant h	3e-80
3jrs_A	208	PYL1, putative uncharacterized protein AT5G46790;	7e-80
3oji_A	189	Abscisic acid receptor PYL3; crystal, PP2C, pyraba	1e-79
3rt2_A	183	Abscisic acid receptor PYL10; ABA-independent PP2C	1e-75
3oqu_A	205	Abscisic acid receptor PYL9; RCAR1, hormone recept	2e-74
3kl1_A	190	PYL2, putative uncharacterized protein AT2G26040;	2e-71
3qrz_A	223	Abscisic acid receptor PYL5; crystal, hormone rece	1e-59
2le1_A	151	Uncharacterized protein; structural genomics, nort	1e-27
3f08_A	146	Uncharacterized protein Q6HG14; NESG Q6HG14_bachk	2e-25
3p51_A	160	Uncharacterized protein; structural genomics, PSI-	3e-25
2vq5_A	201	S-norcoclaurine synthase; lyase, S- norcoclaurine	3e-18
2i9y_A	166	Major latex protein-like protein 28 or MLP-like pr	3e-11
2vjg_A	154	Major allergen DAU C 1; major carrot allergen, pat	1e-10
2flh_A	155	Cytokinin-specific binding protein; zeatin, pathog	1e-10
1e09_A	159	PRU AV 1; allergen, major cherry allergen, pathoge	2e-10
2qim_A	158	PR10.2B; trans-zeatin, cytokinin, plant hormones,	1e-09
1tw0_A	157	Pathogenesis-related class 10 protein SPE-16; seve	9e-09
3ie5_A	165	Phenolic oxidative coupling protein HYP-1; hyperic	1e-08
1icx_A	155	Protein LLR18A, LLPR10.1A; 7-stranded beta sheet,	3e-08
4a8u_A	159	Major pollen allergen BET V 1-J; PR-10 protein; 1.	5e-08
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-05
3rws_A	168	MTN13 protein; zeatin, cytokinin, hormone, lucerne	5e-04

>3k3k_A Abscisic acid receptor PYR1; ABA receptor, plant hormone receptor, A sensor, drought tolerance, plant development; HET: A8S; 1.70A {Arabidopsis thaliana} PDB: 3njo_A* 3qn1_A* 3k90_A* 3jrq_B* 3kdj_A* 3nef_A* 3neg_A* 3nmn_A* 3kay_A* Length = 211

 Score =  237 bits (606), Expect = 3e-80
 Identities = 78/186 (41%), Positives = 113/186 (60%), Gaps = 19/186 (10%)

Query: 22  EEDYIKRHHKHDVHDHQCSSSLVKHIKAPVHLVWSLVRRFDQPQKYKPFVSRCIVQG--D 79
            ++ I   H + +    CSS   + I AP  LVWS+VRRFD+PQ YK F+  C V+   +
Sbjct: 33  LKNSIAEFHTYQLDPGSCSSLHAQRIHAPPELVWSIVRRFDKPQTYKHFIKSCSVEQNFE 92

Query: 80  LQIGSVREVNVKSGLPATTSTERLELLDDEEHIFGMRIVGGDHRLKIIWNFSNFISTSSS 139
           +++G  R+V V SGLPA TSTERL++LDDE  + G  I+GG+HRL               
Sbjct: 93  MRVGCTRDVIVISGLPANTSTERLDILDDERRVTGFSIIGGEHRLT-------------- 138

Query: 140 KLQNYSSIVTVHPEVIDGRPGTLVIESFVVDVPDGNTKDETCYFVEALIKCNLKSLADVS 199
              NY S+ TVH    + R  T+V+ES+VVD+P+GN++D+T  F + ++K NL+ LA V+
Sbjct: 139 ---NYKSVTTVHRFEKENRIWTVVLESYVVDMPEGNSEDDTRMFADTVVKLNLQKLATVA 195

Query: 200 EHLAVQ 205
           E +A  
Sbjct: 196 EAMARN 201

>3jrs_A PYL1, putative uncharacterized protein AT5G46790; plant hormone receptor, abscisic acid, hormone recepto; HET: A8S; 2.05A {Arabidopsis thaliana} Length = 208

 Score =  236 bits (604), Expect = 7e-80
 Identities = 80/205 (39%), Positives = 117/205 (57%), Gaps = 22/205 (10%)

Query: 4   TNDYITVNGSGSGGFGKIEEDYIKRHHKHDVHDHQCSSSLVKHIKAPVHLVWSLVRRFDQ 63
           T  + T+    +          I   H + + + +CSS L + I AP   VWS+VRRFD+
Sbjct: 19  TLHHQTMPSDLTQDEFTQLSQSIAEFHTYQLGNGRCSSLLAQRIHAPPETVWSVVRRFDR 78

Query: 64  PQKYKPFVSRCIVQGD--LQIGSVREVNVKSGLPATTSTERLELLDDEEHIFGMRIVGGD 121
           PQ YK F+  C V  D  +++G  R+VNV SGLPA TS ERL+LLDD+  + G  I GG+
Sbjct: 79  PQIYKHFIKSCNVSEDFEMRVGCTRDVNVISGLPANTSRERLDLLDDDRRVTGFSITGGE 138

Query: 122 HRLKIIWNFSNFISTSSSKLQNYSSIVTVHP---EVIDGRPGTLVIESFVVDVPDGNTKD 178
           HRL+                 NY S+ TVH    E  + R  T+V+ES+VVDVP+GN+++
Sbjct: 139 HRLR-----------------NYKSVTTVHRFEKEEEEERIWTVVLESYVVDVPEGNSEE 181

Query: 179 ETCYFVEALIKCNLKSLADVSEHLA 203
           +T  F + +I+ NL+ LA ++E + 
Sbjct: 182 DTRLFADTVIRLNLQKLASITEAMN 206

>3oji_A Abscisic acid receptor PYL3; crystal, PP2C, pyrabactin, HOR receptor; HET: PYV; 1.84A {Arabidopsis thaliana} PDB: 3klx_A Length = 189

 Score =  235 bits (600), Expect = 1e-79
 Identities = 67/191 (35%), Positives = 110/191 (57%), Gaps = 28/191 (14%)

Query: 22  EEDYIKRHHKHDVHDHQCSSSLVKHIKAPVHLVWSLVRRFDQPQKYKPFVSRCIVQGD-- 79
            +  I+ HH      + C+S +   + AP H +W  VR F  P KYK F+  C ++ +  
Sbjct: 13  LDSIIRTHHTFPRSPNTCTSLIAHRVDAPAHAIWRFVRDFANPNKYKHFIKSCTIRVNGN 72

Query: 80  ----LQIGSVREVNVKSGLPATTSTERLELLDDEEHIFGMRIVGGDHRLKIIWNFSNFIS 135
               +++G++REV+V SGLPA+TS E LE+LD+E+ I   R++GG+HRL           
Sbjct: 73  GIKEIKVGTIREVSVVSGLPASTSVEILEVLDEEKRILSFRVLGGEHRLN---------- 122

Query: 136 TSSSKLQNYSSIVTVHPEVI-----DGRPGTLVIESFVVDVPDGNTKDETCYFVEALIKC 190
                  NY S+ +V+  V+       R  ++V+ES++VD+P GNT+++T  FV+ ++K 
Sbjct: 123 -------NYRSVTSVNEFVVLEKDKKKRVYSVVLESYIVDIPQGNTEEDTRMFVDTVVKS 175

Query: 191 NLKSLADVSEH 201
           NL++LA +S  
Sbjct: 176 NLQNLAVISTA 186

>3rt2_A Abscisic acid receptor PYL10; ABA-independent PP2C inhibitor, PP2CS, hydrolase inhibitor; 1.50A {Arabidopsis thaliana} PDB: 3r6p_A* 3qtj_A* 3uqh_A 3rt0_C Length = 183

 Score =  224 bits (573), Expect = 1e-75
 Identities = 124/196 (63%), Positives = 154/196 (78%), Gaps = 18/196 (9%)

Query: 17  GFGKIEEDYIKRHHKHDVHDHQCSSSLVKHIKAPVHLVWSLVRRFDQPQKYKPFVSRCIV 76
              K+E +YIK+HH+H++ + QCSS+LVKHIKAP+HLVWS+VRRFD+PQKYKPF+SRC+V
Sbjct: 5   ETKKVESEYIKKHHRHELVESQCSSTLVKHIKAPLHLVWSIVRRFDEPQKYKPFISRCVV 64

Query: 77  QGD-LQIGSVREVNVKSGLPATTSTERLELLDDEEHIFGMRIVGGDHRLKIIWNFSNFIS 135
           QG  L++GSVREV++KSGLPAT STE LE+LDD EHI G+RIVGGDHRLK          
Sbjct: 65  QGKKLEVGSVREVDLKSGLPATKSTEVLEILDDNEHILGIRIVGGDHRLK---------- 114

Query: 136 TSSSKLQNYSSIVTVHPEVIDGRPGTLVIESFVVDVPDGNTKDETCYFVEALIKCNLKSL 195
                  NYSS +++H E IDG+ GTL IESFVVDVP+GNTK+ETC+FVEALI+CNL SL
Sbjct: 115 -------NYSSTISLHSETIDGKTGTLAIESFVVDVPEGNTKEETCFFVEALIQCNLNSL 167

Query: 196 ADVSEHLAVQDRTEPI 211
           ADV+E L  +   + I
Sbjct: 168 ADVTERLQAESMEKKI 183

>3oqu_A Abscisic acid receptor PYL9; RCAR1, hormone receptor; HET: A8S; 2.68A {Arabidopsis thaliana} Length = 205

 Score =  223 bits (568), Expect = 2e-74
 Identities = 139/198 (70%), Positives = 161/198 (81%), Gaps = 18/198 (9%)

Query: 13  SGSGGFGKIEE-DYIKRHHKHDVHDHQCSSSLVKHIKAPVHLVWSLVRRFDQPQKYKPFV 71
            G+  +G +E   Y++ HH+H   ++QC+S+LVKHIKAP+HLVWSLVRRFDQPQKYKPFV
Sbjct: 25  GGTAMYGGLETVQYVRTHHQHLCRENQCTSALVKHIKAPLHLVWSLVRRFDQPQKYKPFV 84

Query: 72  SRCIVQGDLQIGSVREVNVKSGLPATTSTERLELLDDEEHIFGMRIVGGDHRLKIIWNFS 131
           SRC V GD +IGS+REVNVKSGLPATTSTERLELLDDEEHI G++I+GGDHRLK      
Sbjct: 85  SRCTVIGDPEIGSLREVNVKSGLPATTSTERLELLDDEEHILGIKIIGGDHRLK------ 138

Query: 132 NFISTSSSKLQNYSSIVTVHPEVIDGRPGTLVIESFVVDVPDGNTKDETCYFVEALIKCN 191
                      NYSSI+TVHPE+I+GR GT+VIESFVVDVP GNTKDETCYFVEALI+CN
Sbjct: 139 -----------NYSSILTVHPEIIEGRAGTMVIESFVVDVPQGNTKDETCYFVEALIRCN 187

Query: 192 LKSLADVSEHLAVQDRTE 209
           LKSLADVSE LA QD T+
Sbjct: 188 LKSLADVSERLASQDITQ 205

>3kl1_A PYL2, putative uncharacterized protein AT2G26040; abscisic acid receptor, crystal, high resolution, PP2C, HORM receptor; 1.55A {Arabidopsis thaliana} PDB: 3kdi_A* 3kdh_A 3nr4_A* 3ns2_A* 3nj0_A* 3nj1_A* 3nmh_A* 3kaz_A 3kb0_A* 3kb3_A* 3ujl_A* 3nmp_A* 3nmt_A* 3nmv_A* Length = 190

 Score =  214 bits (546), Expect = 2e-71
 Identities = 78/192 (40%), Positives = 115/192 (59%), Gaps = 20/192 (10%)

Query: 18  FGKIEEDYIKRHHKHDVHDHQCSSSLVKHIKAPVHLVWSLVRRFDQPQKYKPFVSRC-IV 76
             K  E  IK +H+ +     C+S + + I AP  +VW L+RRFD P++YK FV RC ++
Sbjct: 14  EQKTLEPVIKTYHQFEPDPTTCTSLITQRIHAPASVVWPLIRRFDNPERYKHFVKRCRLI 73

Query: 77  QGDLQIGSVREVNVKSGLPATTSTERLELLDDEEHIFGMRIVGGDHRLKIIWNFSNFIST 136
            GD  +GSVREV V SGLPA+TSTERLE +DD+  +   R+VGG+HRLK           
Sbjct: 74  SGDGDVGSVREVTVISGLPASTSTERLEFVDDDHRVLSFRVVGGEHRLK----------- 122

Query: 137 SSSKLQNYSSIVTVHP--EVIDGRPGTLVIESFVVDVPDGNTKDETCYFVEALIKCNLKS 194
                 NY S+ +V+       G+  T+V+ES+ VD+P+GNT+++T  FV+ ++K NL+ 
Sbjct: 123 ------NYKSVTSVNEFLNQDSGKVYTVVLESYTVDIPEGNTEEDTKMFVDTVVKLNLQK 176

Query: 195 LADVSEHLAVQD 206
           L   +    + D
Sbjct: 177 LGVAATSAPMHD 188

>2le1_A Uncharacterized protein; structural genomics, northeast structural genomics consortiu PSI-2, protein structure initiative, unknown function; NMR {Thermobifida fusca} Length = 151

 Score =  101 bits (252), Expect = 1e-27
 Identities = 26/162 (16%), Positives = 50/162 (30%), Gaps = 25/162 (15%)

Query: 46  HIKAPVHLVWSLVRRFDQPQKYKPFVSRCIVQGDL--QIGSVREVNVKSGLPATTSTERL 103
            + AP   VW+LV  F    ++ P VS   ++G      G+ R     +        ERL
Sbjct: 9   EVAAPAADVWTLVGDFSAIHRWHPQVSAPTLRGASPHTPGAERVFGAGTE---EELVERL 65

Query: 104 ELLDDEEHIFGMRIVGGDHRLKIIWNFSNFISTSSSKLQNYSSIVTVHPEVIDGRPGTLV 163
              D+        +      +                  N+ +++ V P          V
Sbjct: 66  VERDESARRLVYTMPDPPFPIT-----------------NHRAVLEVVPR---DDRHCTV 105

Query: 164 IESFVVDVPDGNTKDETCYFVEALIKCNLKSLADVSEHLAVQ 205
           + + + D      ++      + +    L +LA+    L   
Sbjct: 106 VWTAMFDCSPETARELESVIGDGVFAVGLNALAERYGRLEHH 147

>3f08_A Uncharacterized protein Q6HG14; NESG Q6HG14_bachk Q6HG14 BUR153, structural genomics, PSI-2; 2.20A {Bacillus thuringiensis serovar konkukiorganism_taxid} PDB: 3cnw_A Length = 146

 Score = 95.6 bits (237), Expect = 2e-25
 Identities = 32/160 (20%), Positives = 51/160 (31%), Gaps = 26/160 (16%)

Query: 47  IKAPVHLVWSLVRRFDQPQKYKPFVSRCIVQGDLQIGSVREVNVKSGLPATTSTERLELL 106
           I      VW L+  F+    + P++    +      G VR +    G    T  ERLE+ 
Sbjct: 10  IFGSTEQVWQLIGGFNSLPDWLPYIPSSKLTEG---GRVRHLANPDG---ETIIERLEVF 63

Query: 107 DDEEHIFGMRIVGGDHRLKIIWNFSNFISTSSSKLQNYSSIVTVHPEVIDGRPGTLVIES 166
           +D+E  +   I+     +                  NY S + V          +LV  S
Sbjct: 64  NDKERYYTYSIMNAPFPVT-----------------NYLSTIQVKEGTESN--TSLVEWS 104

Query: 167 FVVDVPDGNTKDETCYFVEALIKCNLKSLADVSEHLAVQD 206
                P   + +E    V  +    LK+L      L    
Sbjct: 105 GTFT-PVAVSDEEAINLVHGIYSDGLKALQHAFLDLEHHH 143

>3p51_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 2.06A {Nitrosospira multiformis} Length = 160

 Score = 95.5 bits (237), Expect = 3e-25
 Identities = 32/168 (19%), Positives = 53/168 (31%), Gaps = 24/168 (14%)

Query: 47  IKAPVHLVWSLVRRFDQPQKYKPFVSRCIVQGDLQIGSVREVNVKSGLPATTSTERLELL 106
           + APV  VWS +R F         +  C   G     SV    + +G       + L   
Sbjct: 10  VDAPVERVWSRIRNFHDFSWAPSLIKSCKKVGGGGGYSVGARRLLNG----EFLDTLIAY 65

Query: 107 DDEEHIFGMRIVGGDHRLKIIWNFSNFISTSSSKLQNYSSIVTVHPEVIDGRPGTLVIES 166
            + E      +  G   +                + NY   + + P  ID    T V  S
Sbjct: 66  SEIERRIMYSMDEGPSPVSSGE------------IYNYVGNLHLLPVTIDD--TTFVEWS 111

Query: 167 FVVDVPDGNTKDETCYFVEALIKCNLKSLADVSEHLAVQDRTEPIDRI 214
              +        E   ++  + +  L  LA      +   R+E ID++
Sbjct: 112 GSWESAS----TEAVEYMNTVYRSLLADLAAEFT--SESRRSEWIDQL 153

>2vq5_A S-norcoclaurine synthase; lyase, S- norcoclaurine biosynthesis, dopamine, hydroxybenzaldehyde; HET: MSE LDP HBA; 2.09A {Thalictrum flavum} PDB: 2vne_A* Length = 201

 Score = 78.2 bits (192), Expect = 3e-18
 Identities = 29/189 (15%), Positives = 68/189 (35%), Gaps = 30/189 (15%)

Query: 29  HHKHDVHDHQCSSSLVKH---IKAPVHLVWSLVRRFDQ----PQKYKPFVSRCIVQGDLQ 81
           HH+  ++     + ++ H   + A    +W++          P        +  + GD  
Sbjct: 16  HHQGIINQVSTVTKVIHHELEVAASADDIWTVYSWPGLAKHLPDLLPGAFEKLEIIGDGG 75

Query: 82  IGSVREVNVKSGLPATTSTERLELLDDEEHIFGMRIVGGDHRLKIIWNFSNFISTSSSKL 141
           +G++ ++    G       E+  L+D+E  +  ++++ G +                   
Sbjct: 76  VGTILDMTFVPGEFPHEYKEKFILVDNEHRLKKVQMIEGGYL-----------------D 118

Query: 142 QNYSSIVTVHPEVIDGRPGTLVIESFVVDVPDGNTKDETCYFVEALIK-CNLKSLADVSE 200
              +        V+     + VI+S      + + K E    VE LI    L ++AD   
Sbjct: 119 LGVTYY-MDTIHVVPTGKDSCVIKSST----EYHVKPEFVKIVEPLITTGPLAAMADAIS 173

Query: 201 HLAVQDRTE 209
            L ++ +++
Sbjct: 174 KLVLEHKSK 182

>2i9y_A Major latex protein-like protein 28 or MLP-like protein 28; AT1G70830, BET V1-like, structural genomics, protein structure initiative; NMR {Arabidopsis thaliana} Length = 166

 Score = 58.4 bits (141), Expect = 3e-11
 Identities = 36/185 (19%), Positives = 67/185 (36%), Gaps = 36/185 (19%)

Query: 29  HHKHDVHDHQCSSSLVK------HIKAPVHLVWSLVRRFDQ--PQKYKPFVSRC-IVQGD 79
           HH H  H    +SSLV        IKA       +         +     +  C + +GD
Sbjct: 3   HHHH--HLETEASSLVGKLETDVEIKASADKFHHMFAGKPHHVSKASPGNIQGCDLHEGD 60

Query: 80  L-QIGSVREVNVKSGLPATTSTERLELLDDEEHIFGMRIVGGDHRLKIIWNFSNFISTSS 138
              +GS+   N      A  + ER+E ++ ++++   R++ GD                 
Sbjct: 61  WGTVGSIVFWNYVHDGEAKVAKERIEAVEPDKNLITFRVIEGD----------------- 103

Query: 139 SKLQNYSSI-VTVHPEVIDGRPGTLVIESFVVDVPDGNTKDETCYFVEALIKCNLKSLAD 197
             ++ Y S  +T+      G PG++V      +              E L++  ++   +
Sbjct: 104 -LMKEYKSFLLTIQVTPKPGGPGSIVHWHLEYEKISEEVAHP-----ETLLQFCVEVSKE 157

Query: 198 VSEHL 202
           + EHL
Sbjct: 158 IDEHL 162

>2flh_A Cytokinin-specific binding protein; zeatin, pathogenesis-related proteins, multiple- ligand binding, plant protein; HET: ZEA; 1.20A {Vigna radiata} PDB: 3c0v_A* Length = 155

 Score = 56.5 bits (136), Expect = 1e-10
 Identities = 14/90 (15%), Positives = 38/90 (42%), Gaps = 4/90 (4%)

Query: 47  IKAPVHLVWS-LVRRFDQ--PQKYKPFVSRC-IVQGDLQIGSVREVNVKSGLPATTSTER 102
           +   +  +W+ L + F    P+     V    +++GD  +G++   N    +  +   E 
Sbjct: 11  LSVRLEALWAVLSKDFITVVPKVLPHIVKDVQLIEGDGGVGTILIFNFLPEVSPSYQREE 70

Query: 103 LELLDDEEHIFGMRIVGGDHRLKIIWNFSN 132
           +   D+  H  G++++ G +  + +  +  
Sbjct: 71  ITEFDESSHEIGLQVIEGGYLSQGLSYYKT 100

>1e09_A PRU AV 1; allergen, major cherry allergen, pathogenesis-related protein, heteronuclear structure; NMR {Prunus avium} SCOP: d.129.3.1 PDB: 1h2o_A 2lpx_A Length = 159

 Score = 56.6 bits (136), Expect = 2e-10
 Identities = 15/87 (17%), Positives = 34/87 (39%), Gaps = 3/87 (3%)

Query: 49  APVHLVWSLVRRFDQ--PQKYKPFVSRC-IVQGDLQIGSVREVNVKSGLPATTSTERLEL 105
            P  L  + V   D   P+     +    I++GD   G+++++    G        +++ 
Sbjct: 14  PPPRLFKAFVLDADNLVPKIAPQAIKHSEILEGDGGPGTIKKITFGEGSQYGYVKHKIDS 73

Query: 106 LDDEEHIFGMRIVGGDHRLKIIWNFSN 132
           +D E + +   ++ GD     +   S 
Sbjct: 74  IDKENYSYSYTLIEGDALGDTLEKISY 100

>2qim_A PR10.2B; trans-zeatin, cytokinin, plant hormones, plant protein, PR-1 protein, pathogenesis-related protein, allergen; HET: ZEA; 1.35A {Lupinus luteus} PDB: 3e85_A* 1xdf_A* 2k7h_A Length = 158

 Score = 54.3 bits (130), Expect = 1e-09
 Identities = 25/105 (23%), Positives = 41/105 (39%), Gaps = 4/105 (3%)

Query: 49  APVHLVWSLVRRFDQ--PQKYKPFVSRCIVQGDLQIGSVREVNVKSGLPATTSTERLELL 106
           AP  L  +LV   D   P+  +   S  IV+G+   G+++++    G  +     ++E +
Sbjct: 15  APAKLYKALVTDADIIIPKAVETIQSVEIVEGNGGPGTIKKLTFIEGGESKYVLHKIEAI 74

Query: 107 DDEEHIFGMRIVGGDHRLKIIWNFSNFISTSSSKLQNYSSIVTVH 151
           D+    +   IVGG      I   S           N  SI  V 
Sbjct: 75  DEANLGYNYSIVGGVGLPDTIEKISFETKLVEGA--NGGSIGKVT 117

>1tw0_A Pathogenesis-related class 10 protein SPE-16; seven antiparallel beta-sheet, plant protein; 2.20A {Pachyrhizus erosus} SCOP: d.129.3.1 PDB: 1txc_A* Length = 157

 Score = 51.5 bits (123), Expect = 9e-09
 Identities = 21/111 (18%), Positives = 45/111 (40%), Gaps = 2/111 (1%)

Query: 49  APVHLVWSLVRRFDQ-PQKYKPFV-SRCIVQGDLQIGSVREVNVKSGLPATTSTERLELL 106
           AP  L  +L +  D   QK    + S  +V+G+  +G+++++    G   +   ++++ +
Sbjct: 14  APAKLYKALTKDSDTIAQKIDGPIQSIELVEGNGGVGTIKKITANEGDKTSFVLQKVDAI 73

Query: 107 DDEEHIFGMRIVGGDHRLKIIWNFSNFISTSSSKLQNYSSIVTVHPEVIDG 157
           D+    +   IVGG    + +   S      +       S VT+       
Sbjct: 74  DEANLGYDYSIVGGTGLPESLEKLSFETKVVAGSGGGSISKVTLKFHTKGD 124

>3ie5_A Phenolic oxidative coupling protein HYP-1; hypericin, ST JOHN'S WORT, depression, allergy, PR-10 protein, cytokinin, plant hormones; HET: PGE PG4 PE8 1PE; 1.69A {Hypericum perforatum} Length = 165

 Score = 52.0 bits (124), Expect = 1e-08
 Identities = 18/82 (21%), Positives = 30/82 (36%), Gaps = 3/82 (3%)

Query: 49  APVHLVWSLVRRFDQ--PQKYKPFVSRC-IVQGDLQIGSVREVNVKSGLPATTSTERLEL 105
           AP  L  +LV    Q   +          I++GD  +G+V ++    G P T    + + 
Sbjct: 21  APHRLFKALVLERHQVLVKAQPHVFKSGEIIEGDGGVGTVTKITFVDGHPLTYMLHKFDE 80

Query: 106 LDDEEHIFGMRIVGGDHRLKII 127
           +D         +  GD     I
Sbjct: 81  IDAANFYCKYTLFEGDVLRDNI 102

>1icx_A Protein LLR18A, LLPR10.1A; 7-stranded beta sheet, C-terminal helix, allergen; 1.95A {Lupinus luteus} SCOP: d.129.3.1 PDB: 1ifv_A Length = 155

 Score = 50.4 bits (120), Expect = 3e-08
 Identities = 18/94 (19%), Positives = 40/94 (42%), Gaps = 2/94 (2%)

Query: 49  APVHLVWSLVRRFDQ--PQKYKPFVSRCIVQGDLQIGSVREVNVKSGLPATTSTERLELL 106
           AP  L  +L +  D+  P+  +P  S  IV+G+   G+++++        +    +L+ +
Sbjct: 14  APAKLYKALTKDSDEIVPKVIEPIQSVEIVEGNGGPGTIKKIIAIHDGHTSFVLHKLDAI 73

Query: 107 DDEEHIFGMRIVGGDHRLKIIWNFSNFISTSSSK 140
           D+    +   I+GG+   + +   S         
Sbjct: 74  DEANLTYNYSIIGGEGLDESLEKISYESKILPGP 107

>4a8u_A Major pollen allergen BET V 1-J; PR-10 protein; 1.16A {Betula pendula} PDB: 4a8v_A* 4a87_A* 4a81_A* 4a80_A* 4a83_A* 4a86_A* 4a85_A* 4a88_A 4a8g_A* 1b6f_A 1btv_A 1bv1_A 1fsk_A 4a84_A* 1llt_A 1fm4_A* 3k78_A 1qmr_A Length = 159

 Score = 49.6 bits (118), Expect = 5e-08
 Identities = 17/106 (16%), Positives = 43/106 (40%), Gaps = 5/106 (4%)

Query: 49  APVHLVWSLVRRFDQ--PQKYKPFVSRC-IVQGDLQIGSVREVNVKSGLPATTSTERLEL 105
               L  + +   D   P+     +S    ++G+   G++++++   G P     +R++ 
Sbjct: 14  PAARLFKAFILDGDNLFPKVAPQAISSVENIEGNGGPGTIKKISFPEGFPFKYVKDRVDE 73

Query: 106 LDDEEHIFGMRIVGGDHRLKIIWNFSNFISTSSSKLQNYSSIVTVH 151
           +D     +   ++ G      +   SN I   ++   N  SI+ ++
Sbjct: 74  VDHTNFKYSYSVIEGGPVGDTLEKISNEIKIVATP--NGGSILKIN 117

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 43.7 bits (102), Expect = 2e-05
 Identities = 26/209 (12%), Positives = 56/209 (26%), Gaps = 58/209 (27%)

Query: 5   NDYITVNGSGSGGFGK-------IEEDYIKRHHKHDVH-----DHQCSSSLVKHIKAPVH 52
              + ++G    G GK            ++      +      +     ++++ +     
Sbjct: 150 AKNVLIDGVL--GSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEML----- 202

Query: 53  LVWSLVRRFDQPQKYKPFVSRCIVQGDLQIGSVREVNVKSGLPATTSTER-LELLDD--- 108
               L+ + D     +   S  I    L+I S++       L  +   E  L +L +   
Sbjct: 203 --QKLLYQIDPNWTSRSDHSSNI---KLRIHSIQAE--LRRLLKSKPYENCLLVLLNVQN 255

Query: 109 EEHI--FGMRIVGGDHRLKIIWNFSNFISTSSSKLQNYSSIVTVHPEVIDGRPGTLVIES 166
            +    F       +   KI+                   + T   +V D          
Sbjct: 256 AKAWNAF-------NLSCKIL-------------------LTTRFKQVTDFLSAATTTHI 289

Query: 167 FVVDVPDGNTKDETCYFVEALIKCNLKSL 195
            +       T DE    +   + C  + L
Sbjct: 290 SLDHHSMTLTPDEVKSLLLKYLDCRPQDL 318

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	214
3oqu_A	205	Abscisic acid receptor PYL9; RCAR1, hormone recept	100.0
3rt2_A	183	Abscisic acid receptor PYL10; ABA-independent PP2C	100.0
3jrs_A	208	PYL1, putative uncharacterized protein AT5G46790;	100.0
3oji_A	189	Abscisic acid receptor PYL3; crystal, PP2C, pyraba	100.0
3k3k_A	211	Abscisic acid receptor PYR1; ABA receptor, plant h	100.0
3kl1_A	190	PYL2, putative uncharacterized protein AT2G26040;	100.0
3qrz_A	223	Abscisic acid receptor PYL5; crystal, hormone rece	100.0
3f08_A	146	Uncharacterized protein Q6HG14; NESG Q6HG14_bachk	99.96
3p51_A	160	Uncharacterized protein; structural genomics, PSI-	99.95
2vjg_A	154	Major allergen DAU C 1; major carrot allergen, pat	99.94
2flh_A	155	Cytokinin-specific binding protein; zeatin, pathog	99.94
1tw0_A	157	Pathogenesis-related class 10 protein SPE-16; seve	99.93
1e09_A	159	PRU AV 1; allergen, major cherry allergen, pathoge	99.93
4a8u_A	159	Major pollen allergen BET V 1-J; PR-10 protein; 1.	99.93
2qim_A	158	PR10.2B; trans-zeatin, cytokinin, plant hormones,	99.93
1icx_A	155	Protein LLR18A, LLPR10.1A; 7-stranded beta sheet,	99.93
3ie5_A	165	Phenolic oxidative coupling protein HYP-1; hyperic	99.92
2i9y_A	166	Major latex protein-like protein 28 or MLP-like pr	99.92
2le1_A	151	Uncharacterized protein; structural genomics, nort	99.92
3rws_A	168	MTN13 protein; zeatin, cytokinin, hormone, lucerne	99.91
2vq5_A	201	S-norcoclaurine synthase; lyase, S- norcoclaurine	99.91
2wql_A	154	Major allergen DAU C 1; pathogenesis-related prote	99.91
3ijt_A	155	SMU.440, putative uncharacterized protein; hypothe	99.83
3tvq_A	169	Multifunctional cyclase-dehydratase-3-O-methyl TR	99.73
3tl1_A	159	WHIE ORF VI, polyketide cyclase; helix-GRIP fold,	99.72
2d4r_A	147	Hypothetical protein TTHA0849; start domain, struc	99.69
3tfz_A	172	Cyclase; helix-GRIP, BET V1-like superfamily, bios	99.65
1vjh_A	122	BET V I allergen family; structural genomics, cent	99.55
3ggn_A	155	Uncharacterized protein DR_A0006; structural genom	99.49
2pcs_A	162	Conserved protein; structural genomics, unknown fu	99.41
1t17_A	148	Conserved hypothetical protein; beta-alpha-beta-BE	99.41
2ns9_A	157	Hypothetical protein APE2225; uncharacterized cons	99.4
2leq_A	146	Uncharacterized protein; start domains, structural	99.26
1xn6_A	143	Hypothetical protein BC4709; structural genomics,	99.13
1z94_A	147	Conserved hypothetical protein; NESG, CV1439, stru	99.1
3p9v_A	161	Uncharacterized protein; structural genomics, PSI-	99.09
1xuv_A	178	Hypothetical protein MM0500; alpha-beta protein, n	99.04
2il5_A	171	Hypothetical protein; structural genomics, APC2365	99.04
2lak_A	160	AHSA1-like protein RHE_CH02687; NESG, structural g	99.03
3q6a_A	135	Uncharacterized protein; structural genomics, PSI-	98.98
1xn5_A	146	BH1534 unknown conserved protein; structural genom	98.98
2ldk_A	172	Uncharacterized protein; structural genomics, nort	98.93
3pu2_A	164	Uncharacterized protein; SRPBCC superfamily, PSI-b	98.89
3q63_A	151	MLL2253 protein; structural genomics, PSI-biology,	98.89
2lcg_A	142	Uncharacterized protein; start domain, structural	98.88
1xfs_A	178	NC_840354, conserved hypothetical protein; structu	98.83
2lgh_A	144	Uncharacterized protein; AHSA1, start domain, COG3	98.8
2kew_A	152	Uncharacterized protein YNDB; start domain, resona	98.8
2l8o_A	144	Uncharacterized protein; mixed alpha-beta protein,	98.79
3rd6_A	161	MLL3558 protein; structural genomics, PSI-biology,	98.78
2qpv_A	156	Uncharacterized protein ATU1531; structural genomi	98.78
2l9p_A	164	Uncharacterized protein; structural genomics, nort	98.77
2lf2_A	175	Uncharacterized protein; NESG, structural genomics	98.76
2nn5_A	184	Hypothetical protein EF_2215; structural genomics,	98.73
3put_A	166	Hypothetical conserved protein; structural genomic	98.73
3q64_A	162	MLL3774 protein; structural genomics, PSI-biology,	98.7
2k5g_A	191	Uncharacterized protein; structural genomiccs, pro	98.69
3eli_A	152	AHSA1, AHA1 domain protein; alpha-beta protein, st	98.68
3uid_A	168	Putative uncharacterized protein; SRPBCC superfami	98.53
1x53_A	145	Activator of 90 kDa heat shock protein ATPase homo	98.28
4fpw_A	181	CALU16; structural genomics, PSI-biology, northeas	98.27
3ni8_A	158	PFC0360W protein; heat shock, malaria, ATPase, str	98.25
2luz_A	192	CALU16; structural genomics, northeast structural	98.19
1zxf_A	155	CALC; SELF-sacrificing resistance protein, structu	98.13
3qsz_A	189	STAR-related lipid transfer protein; structural ge	98.0
2lio_A	136	Uncharacterized protein; structural genomics, nort	97.92
3oh8_A	516	Nucleoside-diphosphate sugar epimerase (SULA FAMI;	97.75
1ln1_A	214	PC-TP, phosphatidylcholine transfer protein; start	97.51
2ffs_A	157	Hypothetical protein PA1206; 7-stranded beta sheet	95.71
1em2_A	229	MLN64 protein; beta barrel, lipid binding protein;	93.77
1jss_A	224	Stard4, cholesterol-regulated start protein 4; sta	93.46
2r55_A	231	STAR-related lipid transfer protein 5; alpha and b	92.71
3p0l_A	221	Steroidogenic acute regulatory protein, mitochond;	89.79
2pso_A	237	STAR-related lipid transfer protein 13; alpha and	87.78
2e3n_A	255	Lipid-transfer protein CERT; ceramide transfer, li	85.98
3fo5_A	258	Thioesterase, adipose associated, isoform BFIT2; o	80.91

>3oqu_A Abscisic acid receptor PYL9; RCAR1, hormone receptor; HET: A8S; 2.68A {Arabidopsis thaliana}

Probab=100.00  E-value=1.2e-43  Score=301.52  Aligned_cols=180  Identities=75%  Similarity=1.211  Sum_probs=157.8

Q ss_pred             CCCCCC-CcchhHHHhhhhcCCCCCceEEEEEeeeecCCHHHHHHHHhcCCCCCccCccceEEEEecCCCCCeEEEEEee
Q 028067           13 SGSGGF-GKIEEDYIKRHHKHDVHDHQCSSSLVKHIKAPVHLVWSLVRRFDQPQKYKPFVSRCIVQGDLQIGSVREVNVK   91 (214)
Q Consensus        13 ~~~~~~-~~~~~~~~~~~~~~~~~~~~ve~sI~~~I~APae~VW~vi~Df~~l~~W~P~V~s~~veG~g~VGsvR~l~~~   91 (214)
                      +|.+.| +..|+++|.++|||+|+++|++++|+++|+|||++||++++||+++++|+|.|++|+++|++++|++|.+++.
T Consensus        25 ~~~~~~~~~~~~~~~~~~~~h~p~~~k~~~~V~~~I~ApadkVW~lV~Df~~l~kW~P~V~s~eveGdg~vGsVR~vt~~  104 (205)
T 3oqu_A           25 GGTAMYGGLETVQYVRTHHQHLCRENQCTSALVKHIKAPLHLVWSLVRRFDQPQKYKPFVSRCTVIGDPEIGSLREVNVK  104 (205)
T ss_dssp             -----------CCHHHHHTCCCCCTTEEEEEEEEEESSCHHHHHHHHTCTTCGGGTCTTEEEEECCSSCCTTCEEEEEEC
T ss_pred             CchhhhccccccHHHHHHHhcCCCCcEEEEEEeeEEcCCHHHHHHHHhCcCChhHcCccceEEEeeCCCCCCcEEEEEEc
Confidence            345566 7799999999999999999999999999999999999999999999999999999999998889999999999


Q ss_pred             CCCCcceEEEEEEEEeCCCcEEEEEEEcCcccceeeeccccccccCCCcceeeEEEEEEEeecCCCcceEEEEEEEEeeC
Q 028067           92 SGLPATTSTERLELLDDEEHIFGMRIVGGDHRLKIIWNFSNFISTSSSKLQNYSSIVTVHPEVIDGRPGTLVIESFVVDV  171 (214)
Q Consensus        92 ~G~p~~~v~ErL~~~D~~~~~~~Y~iv~g~~~~~~~~~~~~~~~~~~~p~~~y~ati~v~p~~~~gs~~t~~~~s~~~~~  171 (214)
                      +|.|..+++|||+++|+++|+|+|+|++|+                 +|+++|++|++|.|.+++|...|+++|++.+++
T Consensus       105 ~G~p~~~vkErL~~lDde~~~~sYsIieG~-----------------lpv~~Y~ati~V~p~~~dG~~~T~v~ws~~~D~  167 (205)
T 3oqu_A          105 SGLPATTSTERLELLDDEEHILGIKIIGGD-----------------HRLKNYSSILTVHPEIIEGRAGTMVIESFVVDV  167 (205)
T ss_dssp             TTSSCSEEEEEEEEEETTTTEEEEEEEEES-----------------SSCTTCEEEEEEEEECCCC-CEEEEEEEEEEEC
T ss_pred             CCCccceEEEEEEEEECCCCEEEEEEEecC-----------------cceeEEEEEEEEEEccCCCCceEEEEEEEeccC
Confidence            998777899999999999999999999974                 467999999999999865655688899998999


Q ss_pred             CCCCCHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCC
Q 028067          172 PDGNTKDETCYFVEALIKCNLKSLADVSEHLAVQDRTE  209 (214)
Q Consensus       172 p~~~~~~~~~~~v~~~~~~gL~~L~~~le~~a~~~~~~  209 (214)
                      |++.+++.++.+++.+|++||++|++.+|++|.++|||
T Consensus       168 p~g~t~e~~~~~v~~v~~~gL~~L~~~~e~~~~~~~~~  205 (205)
T 3oqu_A          168 PQGNTKDETCYFVEALIRCNLKSLADVSERLASQDITQ  205 (205)
T ss_dssp             CTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC---
T ss_pred             CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCC
Confidence            99999999999999999999999999999999999986

>3rt2_A Abscisic acid receptor PYL10; ABA-independent PP2C inhibitor, PP2CS, hydrolase inhibitor; 1.50A {Arabidopsis thaliana} PDB: 3r6p_A* 3qtj_A* 3uqh_A 3rt0_C

Probab=100.00  E-value=1.5e-43  Score=296.15  Aligned_cols=178  Identities=66%  Similarity=1.129  Sum_probs=156.3

Q ss_pred             CCCCcchhHHHhhhhcCCCCCceEEEEEeeeecCCHHHHHHHHhcCCCCCccCccceEEEEec-CCCCCeEEEEEeeCCC
Q 028067           16 GGFGKIEEDYIKRHHKHDVHDHQCSSSLVKHIKAPVHLVWSLVRRFDQPQKYKPFVSRCIVQG-DLQIGSVREVNVKSGL   94 (214)
Q Consensus        16 ~~~~~~~~~~~~~~~~~~~~~~~ve~sI~~~I~APae~VW~vi~Df~~l~~W~P~V~s~~veG-~g~VGsvR~l~~~~G~   94 (214)
                      ++||..|+++|.++|+|++++.++..+++++|+||+++||++++||+++++|+|.|++|.++| ++++|++|.+++.+|.
T Consensus         4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~I~Apa~~VW~~v~df~~l~~w~P~V~s~~~eG~~ggvGsvR~lt~~~G~   83 (183)
T 3rt2_A            4 DETKKVESEYIKKHHRHELVESQCSSTLVKHIKAPLHLVWSIVRRFDEPQKYKPFISRCVVQGKKLEVGSVREVDLKSGL   83 (183)
T ss_dssp             ------CCHHHHHHSCCCCSTTEEEEEEEEEESSCHHHHHHHHTCTTCGGGTCTTEEEEEESSSCCCTTCEEEEEECCSS
T ss_pred             CccceechHHHHHhhccCCCCCceEEEEEEEEeCCHHHHHHHHhCcCchhhcCccceEEEeeCCCCCCCcEEEEEeCCCC
Confidence            458999999999999999999999999999999999999999999999999999999998889 7899999999999997


Q ss_pred             CcceEEEEEEEEeCCCcEEEEEEEcCcccceeeeccccccccCCCcceeeEEEEEEEeec-CCCcceEEEEEEEEeeCCC
Q 028067           95 PATTSTERLELLDDEEHIFGMRIVGGDHRLKIIWNFSNFISTSSSKLQNYSSIVTVHPEV-IDGRPGTLVIESFVVDVPD  173 (214)
Q Consensus        95 p~~~v~ErL~~~D~~~~~~~Y~iv~g~~~~~~~~~~~~~~~~~~~p~~~y~ati~v~p~~-~~gs~~t~~~~s~~~~~p~  173 (214)
                      |..+++|||+++|+++|+|+|+|++|+                 +|+++|.++++|+|.+ +++ ..|.+.|++.+++|+
T Consensus        84 p~~~vkErL~~~D~~~~~~sY~Iieg~-----------------lp~~~y~ati~v~p~~~dG~-~gt~V~Ws~~fd~~~  145 (183)
T 3rt2_A           84 PATKSTEVLEILDDNEHILGIRIVGGD-----------------HRLKNYSSTISLHSETIDGK-TGTLAIESFVVDVPE  145 (183)
T ss_dssp             TTCEEEEEEEEEETTTTEEEEEEEEES-----------------CSCTTCEEEEEEEEEEETTE-EEEEEEEEEEEECCT
T ss_pred             ccceEEEEEEEEECCCCEEEEEEecCC-----------------cceeEEEEEEEEEEecCCCC-CCEEEEEEEEEEcCC
Confidence            777899999999999999999999975                 3669999999999986 442 135666677778999


Q ss_pred             CCCHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCCCC
Q 028067          174 GNTKDETCYFVEALIKCNLKSLADVSEHLAVQDRTEPI  211 (214)
Q Consensus       174 ~~~~~~~~~~v~~~~~~gL~~L~~~le~~a~~~~~~~~  211 (214)
                      +.+++.+..|++++|++||++|++.+|++|.++|||||
T Consensus       146 g~~~e~~~~~~~~i~~~~L~~L~~~~e~~~~~~~~~~~  183 (183)
T 3rt2_A          146 GNTKEETCFFVEALIQCNLNSLADVTERLQAESMEKKI  183 (183)
T ss_dssp             TCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC---
T ss_pred             CCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCC
Confidence            99999999999999999999999999999999999997

>3jrs_A PYL1, putative uncharacterized protein AT5G46790; plant hormone receptor, abscisic acid, hormone recepto; HET: A8S; 2.05A {Arabidopsis thaliana}

Probab=100.00  E-value=1.9e-37  Score=263.84  Aligned_cols=164  Identities=42%  Similarity=0.732  Sum_probs=147.1

Q ss_pred             HHHhhhhcCCCCCceEEEEEeeeecCCHHHHHHHHhcCCCCCccCccceEEEE-ecC-CCCCeEEEEEeeCCCCcceEEE
Q 028067           24 DYIKRHHKHDVHDHQCSSSLVKHIKAPVHLVWSLVRRFDQPQKYKPFVSRCIV-QGD-LQIGSVREVNVKSGLPATTSTE  101 (214)
Q Consensus        24 ~~~~~~~~~~~~~~~ve~sI~~~I~APae~VW~vi~Df~~l~~W~P~V~s~~v-eG~-g~VGsvR~l~~~~G~p~~~v~E  101 (214)
                      ++|.++|+|+|++.++...++++|+|||++||++++||+++++|+|.|++|++ +|+ +++|++|.+++.+|.|..+++|
T Consensus        39 ~~~~~~~~h~~~~~~c~~~v~~~I~ApadkVW~lv~Df~~l~~w~p~V~s~e~~eGd~g~vGsVR~lt~~~G~p~~~vkE  118 (208)
T 3jrs_A           39 QSIAEFHTYQLGNGRCSSLLAQRIHAPPETVWSVVRRFDRPQIYKHFIKSCNVSEDFEMRVGCTRDVNVISGLPANTSRE  118 (208)
T ss_dssp             HHHHHHSCCCCCTTEEEEEEEEEESSCHHHHHHHHTCTTCGGGTCTTEEEEECCTTCCCSTTCEEEEEECTTSSCCEEEE
T ss_pred             HHHHHHhccCCCCCeEeEEEEEEEeCCHHHHHHHHhCcCChhHccccceEEEEecCCCCCCCeEEEEEecCCCccceEEE
Confidence            59999999999999999999999999999999999999999999999999997 585 6899999999999987778999


Q ss_pred             EEEEEeCCCcEEEEEEEcCcccceeeeccccccccCCCcceeeEEEEEEEeecC-CCcceEEEEEEEE--eeCCCCCCHH
Q 028067          102 RLELLDDEEHIFGMRIVGGDHRLKIIWNFSNFISTSSSKLQNYSSIVTVHPEVI-DGRPGTLVIESFV--VDVPDGNTKD  178 (214)
Q Consensus       102 rL~~~D~~~~~~~Y~iv~g~~~~~~~~~~~~~~~~~~~p~~~y~ati~v~p~~~-~gs~~t~~~~s~~--~~~p~~~~~~  178 (214)
                      ||+++|+++|+|+|+|++|+.                 |+++|+++|+|.|.++ ++|.++|+..++.  .|+|++++++
T Consensus       119 rL~~lDde~~~~sYsIieG~l-----------------pv~~Y~sti~V~p~~~g~~t~V~Wt~~fes~~~D~p~g~~~e  181 (208)
T 3jrs_A          119 RLDLLDDDRRVTGFSITGGEH-----------------RLRNYKSVTTVHRFEKEEEEERIWTVVLESYVVDVPEGNSEE  181 (208)
T ss_dssp             EEEEEETTTTEEEEEEEESSS-----------------SCTTCEEEEEEEEEEC-----CEEEEEEEEEEEECCTTSCHH
T ss_pred             EEEEEeccCCEEEEEEeeCCc-----------------ceeeEEEEEEEEEccCCCccEEEEEEEEEEccCCCCCCCCHH
Confidence            999999999999999999754                 6699999999999643 5788899977653  4789999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhhhhh
Q 028067          179 ETCYFVEALIKCNLKSLADVSEHLAV  204 (214)
Q Consensus       179 ~~~~~v~~~~~~gL~~L~~~le~~a~  204 (214)
                      +++.|++++|++||++|++.+|++|.
T Consensus       182 ~a~~~~~~vy~~gL~~L~~~~e~~~~  207 (208)
T 3jrs_A          182 DTRLFADTVIRLNLQKLASITEAMNR  207 (208)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHTC-
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence            99999999999999999999999875

>3oji_A Abscisic acid receptor PYL3; crystal, PP2C, pyrabactin, HOR receptor; HET: PYV; 1.84A {Arabidopsis thaliana} PDB: 4ds8_A* 3klx_A* 4dsb_A* 4dsc_A*

Probab=100.00  E-value=1.6e-36  Score=254.64  Aligned_cols=162  Identities=41%  Similarity=0.817  Sum_probs=146.2

Q ss_pred             hHHHhhhhcCCCCCceEEEEEeeeecCCHHHHHHHHhcCCCCCccCccceEEEEe--cCCC----CCeEEEEEeeCCCCc
Q 028067           23 EDYIKRHHKHDVHDHQCSSSLVKHIKAPVHLVWSLVRRFDQPQKYKPFVSRCIVQ--GDLQ----IGSVREVNVKSGLPA   96 (214)
Q Consensus        23 ~~~~~~~~~~~~~~~~ve~sI~~~I~APae~VW~vi~Df~~l~~W~P~V~s~~ve--G~g~----VGsvR~l~~~~G~p~   96 (214)
                      +++|.++|+|.+.+.++...++.+|+||+++||++++||++++.|+|.|++|+++  |+++    +|++|.+++.+|.|.
T Consensus        14 ~~~~~~~~~~~~~~~~c~s~~~~~I~Ap~d~VWalVrdF~~p~~w~p~V~s~~~~e~Gdg~~~~~vGsVR~ltl~~G~P~   93 (189)
T 3oji_A           14 DSIIRTHHTFPRSPNTCTSLIAHRVDAPAHAIWRFVRDFANPNKYKHFIKSCTIRVNGNGIKEIKVGTIREVSVVSGLPA   93 (189)
T ss_dssp             HHHHHHHSCCCCC-CEEEEEEEEEESSCHHHHHHHHSCTTCGGGTCTTEEEEEECCC----CCCSTTCEEEEEECSSSSB
T ss_pred             HHHHHHhcccCCCCCccceeEEEEEcCCHHHHHHHHhCCCChhhCccccceEEEEecCCCCccCCCCcEEEEEecCCCcC
Confidence            4699999999999999999999999999999999999999999999999999985  8765    999999999999887


Q ss_pred             ceEEEEEEEEeCCCcEEEEEEEcCcccceeeeccccccccCCCcceeeEEEEEEEeecC--CC---cceEEEEEEEEeeC
Q 028067           97 TTSTERLELLDDEEHIFGMRIVGGDHRLKIIWNFSNFISTSSSKLQNYSSIVTVHPEVI--DG---RPGTLVIESFVVDV  171 (214)
Q Consensus        97 ~~v~ErL~~~D~~~~~~~Y~iv~g~~~~~~~~~~~~~~~~~~~p~~~y~ati~v~p~~~--~g---s~~t~~~~s~~~~~  171 (214)
                      .+++|||+++|+++|+|+|+|++|++                 |+++|+++++|+|..+  +|   ...|++.|++.+++
T Consensus        94 ~~i~ErL~~lDde~~~~sY~Iieg~~-----------------pv~nY~StitV~~~~~~~~G~~~~~~T~v~es~~~D~  156 (189)
T 3oji_A           94 STSVEILEVLDEEKRILSFRVLGGEH-----------------RLNNYRSVTSVNEFVVLEKDKKKRVYSVVLESYIVDI  156 (189)
T ss_dssp             SEEEEEEEEEETTTTEEEEEEEECSB-----------------SSCSCEEEEEEEEEEEECTTSCEEEEEEEEEEEEEEC
T ss_pred             ceEEEEEEEEeccCCEEEEEEEecCC-----------------ccccEEEEEEEEeccccCCCccccCcEEEEEeEecCC
Confidence            78999999999999999999999865                 5599999999999764  45   24689999999999


Q ss_pred             CCCCCHHHHHHHHHHHHHHHHHHHHHHHhh
Q 028067          172 PDGNTKDETCYFVEALIKCNLKSLADVSEH  201 (214)
Q Consensus       172 p~~~~~~~~~~~v~~~~~~gL~~L~~~le~  201 (214)
                      |+++++++++.|++++|++||++|++.+|+
T Consensus       157 P~g~t~e~~~~~v~~v~~~gL~~L~~~~e~  186 (189)
T 3oji_A          157 PQGNTEEDTRMFVDTVVKSNLQNLAVISTA  186 (189)
T ss_dssp             CTTSCHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred             CCCCCHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence            999999999999999999999999999997

>3k3k_A Abscisic acid receptor PYR1; ABA receptor, plant hormone receptor, A sensor, drought tolerance, plant development; HET: A8S; 1.70A {Arabidopsis thaliana} PDB: 3njo_A* 3qn1_A* 3k90_A* 3zvu_A* 3jrq_B* 3kdj_A* 3nef_A* 3neg_A* 3nmn_A* 3kay_A*

Probab=100.00  E-value=7.5e-37  Score=260.74  Aligned_cols=166  Identities=42%  Similarity=0.718  Sum_probs=150.9

Q ss_pred             HHHhhhhcCCCCCceEEEEEeeeecCCHHHHHHHHhcCCCCCccCccceEEEEe-cC-CCCCeEEEEEeeCCCCcceEEE
Q 028067           24 DYIKRHHKHDVHDHQCSSSLVKHIKAPVHLVWSLVRRFDQPQKYKPFVSRCIVQ-GD-LQIGSVREVNVKSGLPATTSTE  101 (214)
Q Consensus        24 ~~~~~~~~~~~~~~~ve~sI~~~I~APae~VW~vi~Df~~l~~W~P~V~s~~ve-G~-g~VGsvR~l~~~~G~p~~~v~E  101 (214)
                      ++|.++|+|+|++.++...++++|+|||++||++++||++++.|.|.|++|++. |+ +++|++|.+++.+|.|..+++|
T Consensus        35 ~~~~~~~~h~~~~~~c~~~v~~~I~ApadkVW~lv~dF~~l~~w~p~V~s~e~~eGd~g~vGsVR~lt~~~G~p~~~vkE  114 (211)
T 3k3k_A           35 NSIAEFHTYQLDPGSCSSLHAQRIHAPPELVWSIVRRFDKPQTYKHFIKSCSVEQNFEMRVGCTRDVIVISGLPANTSTE  114 (211)
T ss_dssp             HHHHHHSCCCCCTTEEEEEEEEEESSCHHHHHHHHTCTTCGGGTCSSEEEEECCTTCCCCTTCEEEEEESSSSSCEEEEE
T ss_pred             HHHHHHhccCCCCCeEeEEEEEEEcCCHHHHHHHHhCcCChhHcCccceEEEEecCCCCCCCcEEEEEecCCCccceEEE
Confidence            599999999999999999999999999999999999999999999999999974 65 4899999999999987778999


Q ss_pred             EEEEEeCCCcEEEEEEEcCcccceeeeccccccccCCCcceeeEEEEEEEeecCCCcceEEEEEEEE--eeCCCCCCHHH
Q 028067          102 RLELLDDEEHIFGMRIVGGDHRLKIIWNFSNFISTSSSKLQNYSSIVTVHPEVIDGRPGTLVIESFV--VDVPDGNTKDE  179 (214)
Q Consensus       102 rL~~~D~~~~~~~Y~iv~g~~~~~~~~~~~~~~~~~~~p~~~y~ati~v~p~~~~gs~~t~~~~s~~--~~~p~~~~~~~  179 (214)
                      ||+++|+++|+|+|+|++|+                 +|+++|+++|+|.|.++++  ++|+..++.  .|+|++++++.
T Consensus       115 rL~~lDd~~~~~sYsIieg~-----------------lpv~~Y~sti~V~p~~~gg--V~Wt~~fes~~~D~P~g~~~e~  175 (211)
T 3k3k_A          115 RLDILDDERRVTGFSIIGGE-----------------HRLTNYKSVTTVHRFEKEN--RIWTVVLESYVVDMPEGNSEDD  175 (211)
T ss_dssp             EEEEEETTTTEEEEEEEEET-----------------TGGGTCEEEEEEEEEEETT--EEEEEEEEEEEEECCSSSSSSC
T ss_pred             EEEEEeccCCEEEEEEeecC-----------------cceeEEEEEEEEEECCCCC--EEEEEEEEEecCCCCCCCCHHH
Confidence            99999999999999999975                 4669999999999998554  899887754  36899999889


Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhhhhcCCC
Q 028067          180 TCYFVEALIKCNLKSLADVSEHLAVQDRT  208 (214)
Q Consensus       180 ~~~~v~~~~~~gL~~L~~~le~~a~~~~~  208 (214)
                      ++.|++++|++||++|++.+|++|.+.-.
T Consensus       176 a~~~v~~iy~~gL~~L~~~~e~~~~~~~~  204 (211)
T 3k3k_A          176 TRMFADTVVKLNLQKLATVAEAMARNSGD  204 (211)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHHHTTTC-
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhhhccC
Confidence            99999999999999999999999987644

>3kl1_A PYL2, putative uncharacterized protein AT2G26040; abscisic acid receptor, crystal, high resolution, PP2C, HORM receptor; 1.55A {Arabidopsis thaliana} PDB: 3kdi_A* 3kdh_A 3nr4_A* 3ns2_A* 3nj0_A* 3nj1_A* 3nmh_A* 3kaz_A 3kb0_A* 3kb3_A* 3ujl_A* 3nmp_A* 3nmt_A* 3nmv_A*

Probab=100.00  E-value=3.4e-36  Score=252.86  Aligned_cols=164  Identities=45%  Similarity=0.813  Sum_probs=147.4

Q ss_pred             hHHHhhhhcCCCCCceEEEEEeeeecCCHHHHHHHHhcCCCCCccCccceEEEE-ecCCCCCeEEEEEeeCCCCcceEEE
Q 028067           23 EDYIKRHHKHDVHDHQCSSSLVKHIKAPVHLVWSLVRRFDQPQKYKPFVSRCIV-QGDLQIGSVREVNVKSGLPATTSTE  101 (214)
Q Consensus        23 ~~~~~~~~~~~~~~~~ve~sI~~~I~APae~VW~vi~Df~~l~~W~P~V~s~~v-eG~g~VGsvR~l~~~~G~p~~~v~E  101 (214)
                      +++|.++|+|+|+++++..+++++|+||+++||++++||++++.|.|.|++|++ +|++++|++|.+++.+|.|..+++|
T Consensus        19 ~~~~~~~~~h~~~~~~~~~~~~~~I~Apa~~vW~lv~df~~~~~w~p~I~s~e~~eGdg~vGsVR~~t~~~G~p~~~vkE   98 (190)
T 3kl1_A           19 EPVIKTYHQFEPDPTTCTSLITQRIHAPASVVWPLIRRFDNPERYKHFVKRCRLISGDGDVGSVREVTVISGLPASTSTE   98 (190)
T ss_dssp             HHHHHHHSCCCCCTTEEEEEEEEEESSCHHHHHHHHHCTTCGGGTCSSEEEEEEEESSSSTTCEEEEEECSSSSCEEEEE
T ss_pred             hHHHHHHhccCCCCCceeEEEEEEecCCHHHHHHHHhCCCChhHcccccCEEEEEcCCCCCCeEEEEEecCCCccceEEE
Confidence            469999999999999999999999999999999999999999899999999997 5998899999999999987778999


Q ss_pred             EEEEEeCCCcEEEEEEEcCcccceeeeccccccccCCCcceeeEEEEEEEee-----cCCCcceEEEEEEEEeeCCCCCC
Q 028067          102 RLELLDDEEHIFGMRIVGGDHRLKIIWNFSNFISTSSSKLQNYSSIVTVHPE-----VIDGRPGTLVIESFVVDVPDGNT  176 (214)
Q Consensus       102 rL~~~D~~~~~~~Y~iv~g~~~~~~~~~~~~~~~~~~~p~~~y~ati~v~p~-----~~~gs~~t~~~~s~~~~~p~~~~  176 (214)
                      ||+++|+++|+|+|+|++|+.                 |+++|.+++++.+.     ++++   |.+.|+..+++|++.+
T Consensus        99 rL~~iD~~~~~~sY~iieG~~-----------------~~~~Y~s~~~v~~~~~~~~~~~g---t~V~Ws~~f~~p~g~~  158 (190)
T 3kl1_A           99 RLEFVDDDHRVLSFRVVGGEH-----------------RLKNYKSVTSVNEFLNQDSGKVY---TVVLESYTVDIPEGNT  158 (190)
T ss_dssp             EEEEEETTTTEEEEEEEEESS-----------------SCCSCEEEEEEEEEEC-CCCCEE---EEEEEEEEEECCTTCC
T ss_pred             EEEEEeccCCEEEEEEEecCC-----------------ccccEEEEEEEEecccccCCCCc---EEEEEEEEEEcCCCCC
Confidence            999999999999999999864                 45899999999985     2233   4556666678899999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhhhhcC
Q 028067          177 KDETCYFVEALIKCNLKSLADVSEHLAVQD  206 (214)
Q Consensus       177 ~~~~~~~v~~~~~~gL~~L~~~le~~a~~~  206 (214)
                      ++.+..+++++|++||++|++.+|++|.||
T Consensus       159 ~e~~~~~~~~~~~~gL~~L~~~~e~~~~~~  188 (190)
T 3kl1_A          159 EEDTKMFVDTVVKLNLQKLGVAATSAPMHD  188 (190)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHSCC--
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhcccccc
Confidence            999999999999999999999999999987

>3f08_A Uncharacterized protein Q6HG14; NESG Q6HG14_bachk Q6HG14 BUR153, structural genomics, PSI-2; 2.20A {Bacillus thuringiensis serovar konkukiorganism_taxid} SCOP: d.129.3.8 PDB: 3cnw_A

Probab=99.96  E-value=1.9e-28  Score=195.96  Aligned_cols=137  Identities=22%  Similarity=0.332  Sum_probs=118.9

Q ss_pred             eEEEEEeeeecCCHHHHHHHHhcCCCCCccCccceEEEEecCCCCCeEEEEEeeCCCCcceEEEEEEEEeCCCcEEEEEE
Q 028067           38 QCSSSLVKHIKAPVHLVWSLVRRFDQPQKYKPFVSRCIVQGDLQIGSVREVNVKSGLPATTSTERLELLDDEEHIFGMRI  117 (214)
Q Consensus        38 ~ve~sI~~~I~APae~VW~vi~Df~~l~~W~P~V~s~~veG~g~VGsvR~l~~~~G~p~~~v~ErL~~~D~~~~~~~Y~i  117 (214)
                      +++.++  +|+|||++||++++||+++++|.|.+.+|++.+ |  |++|.+++.+|.   +++|||+++|+++++++|++
T Consensus         3 ~v~~si--~I~Ap~~~VW~~l~d~~~~~~w~p~v~~~~~~~-G--G~vR~~~~~~G~---~~~Erl~~~D~~~~~~~y~i   74 (146)
T 3f08_A            3 HTTTSM--EIFGSTEQVWQLIGGFNSLPDWLPYIPSSKLTE-G--GRVRHLANPDGE---TIIERLEVFNDKERYYTYSI   74 (146)
T ss_dssp             EEEEEE--EESSCHHHHHHHHCSTTCHHHHCTTCCEEEEEG-G--GTEEEEECTTSC---EEEEEEEEEETTTTEEEEEE
T ss_pred             EEEEEE--EEeCCHHHHHHHHhccccHHHhCCCeEEEEEeC-C--CeEEEEEeCCCC---EEEEEEEEEeCCCCEEEEEE
Confidence            578889  999999999999999999999999999998752 1  899999998884   89999999999999999999


Q ss_pred             EcCcccceeeeccccccccCCCcceeeEEEEEEEe-ecCCCcceEEEEEEEEeeCCCCCCHHHHHHHHHHHHHHHHHHHH
Q 028067          118 VGGDHRLKIIWNFSNFISTSSSKLQNYSSIVTVHP-EVIDGRPGTLVIESFVVDVPDGNTKDETCYFVEALIKCNLKSLA  196 (214)
Q Consensus       118 v~g~~~~~~~~~~~~~~~~~~~p~~~y~ati~v~p-~~~~gs~~t~~~~s~~~~~p~~~~~~~~~~~v~~~~~~gL~~L~  196 (214)
                      ++|+                 +|+++|.++++|.| .+++||.++|...+   + |++..++.++++++++|++||++|+
T Consensus        75 v~g~-----------------~~~~~~~~~~~v~p~~~~~gt~v~w~~~~---~-p~g~~~~~~~~~~~~~~~~~L~~Lk  133 (146)
T 3f08_A           75 MNAP-----------------FPVTNYLSTIQVKEGTESNTSLVEWSGTF---T-PVAVSDEEAINLVHGIYSDGLKALQ  133 (146)
T ss_dssp             EECS-----------------SSEEEEEEEEEEEECSSTTCEEEEEEEEE---E-ESSSCHHHHHHHHHHHHHHHHHHHH
T ss_pred             ecCC-----------------CceeEEEEEEEEEEecCCCcEEEEEEEEE---E-eCCCCHHHHHHHHHHHHHHHHHHHH
Confidence            9973                 46799999999999 55577766666654   3 4777888899999999999999999


Q ss_pred             HHHhhhh
Q 028067          197 DVSEHLA  203 (214)
Q Consensus       197 ~~le~~a  203 (214)
                      +.+|.+.
T Consensus       134 ~~~e~~~  140 (146)
T 3f08_A          134 HAFLDLE  140 (146)
T ss_dssp             HHTTC--
T ss_pred             HHHhhhh
Confidence            9999864

>3p51_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 2.06A {Nitrosospira multiformis}

Probab=99.95  E-value=6.3e-27  Score=190.59  Aligned_cols=145  Identities=21%  Similarity=0.268  Sum_probs=113.9

Q ss_pred             eEEEEEeeeecCCHHHHHHHHhcCCCCCccCccceEE-EE-ecC--CCCCeEEEEEeeCCCCcceEEEEEEEEeCCCcEE
Q 028067           38 QCSSSLVKHIKAPVHLVWSLVRRFDQPQKYKPFVSRC-IV-QGD--LQIGSVREVNVKSGLPATTSTERLELLDDEEHIF  113 (214)
Q Consensus        38 ~ve~sI~~~I~APae~VW~vi~Df~~l~~W~P~V~s~-~v-eG~--g~VGsvR~l~~~~G~p~~~v~ErL~~~D~~~~~~  113 (214)
                      ++++++  +|+|||++||++++||+++ +|.|.+.+| ++ +|+  +++|++|.+   +|    +++|||+++|++++++
T Consensus         3 ~v~~si--~I~Ap~~~VW~~v~Df~~~-~w~P~v~~s~e~~eg~~~~~vGsvR~~---gg----~v~Erl~~~D~~~~~~   72 (160)
T 3p51_A            3 KVYNSI--VVDAPVERVWSRIRNFHDF-SWAPSLIKSCKKVGGGGGYSVGARRLL---NG----EFLDTLIAYSEIERRI   72 (160)
T ss_dssp             EEEEEE--EESSCHHHHHHHHCCTTCC-TTCTTTCCCEEEESSCCTTCTTCEEEE---TT----TEEEEEEEEETTTTEE
T ss_pred             EEEEEE--EECCCHHHHHHHHhCcCCC-eEccCceEEEEEEecCCCCCCCCEEEE---CC----EEEEEEEEEcCCCcEE
Confidence            588899  9999999999999999999 999998777 76 564  489999997   34    6899999999999999


Q ss_pred             EEEEEcCcccceeeeccccccccCCCcceeeEEEEEEEeec-CCCcceEEEEEEEEeeCCCCCCHHHHHHHHHHHHHHHH
Q 028067          114 GMRIVGGDHRLKIIWNFSNFISTSSSKLQNYSSIVTVHPEV-IDGRPGTLVIESFVVDVPDGNTKDETCYFVEALIKCNL  192 (214)
Q Consensus       114 ~Y~iv~g~~~~~~~~~~~~~~~~~~~p~~~y~ati~v~p~~-~~gs~~t~~~~s~~~~~p~~~~~~~~~~~v~~~~~~gL  192 (214)
                      +|++++|+.+.            .+-.+++|.++++|.|.+ ++||.++|...+..   ++    +.++++++++|++||
T Consensus        73 sY~ii~g~l~~------------~~~~~~~y~~~~~v~p~~~~ggt~V~w~~~~~~---~~----~~~~~~~~~~~~~~L  133 (160)
T 3p51_A           73 MYSMDEGPSPV------------SSGEIYNYVGNLHLLPVTIDDTTFVEWSGSWES---AS----TEAVEYMNTVYRSLL  133 (160)
T ss_dssp             EEEEEECSTTS------------STTTEEEEEEEEEEEEETTTTEEEEEEEEEEEE---SC----SHHHHHHHHHHHHHH
T ss_pred             EEEEecCCCcc------------cccceeEEEEEEEEEEecCCCCEEEEEEEEEEe---CH----HHHHHHHHHHHHHHH
Confidence            99999974320            000179999999999986 56776777666543   32    267899999999999


Q ss_pred             HHHHHHHhhhhhcCCCCCCCC
Q 028067          193 KSLADVSEHLAVQDRTEPIDR  213 (214)
Q Consensus       193 ~~L~~~le~~a~~~~~~~~~~  213 (214)
                      ++|++.+|+  .+.|.+-||.
T Consensus       134 ~~Lk~~~e~--~~~~~~~~~~  152 (160)
T 3p51_A          134 ADLAAEFTS--ESRRSEWIDQ  152 (160)
T ss_dssp             HHHHHHSCT--TTCC------
T ss_pred             HHHHHHHhh--ccccchHHHH
Confidence            999999996  5667777775

>2flh_A Cytokinin-specific binding protein; zeatin, pathogenesis-related proteins, multiple- ligand binding, plant protein; HET: ZEA; 1.20A {Vigna radiata} PDB: 3c0v_A*

Probab=99.94  E-value=2e-25  Score=180.88  Aligned_cols=142  Identities=15%  Similarity=0.206  Sum_probs=113.6

Q ss_pred             ceEEEEEeeeecCCHHHHHHH-HhcCCCC-CccCc-cceEEEE-ecCCCCCeEEEEEeeCC-CCcceEEEEEEEEeCCCc
Q 028067           37 HQCSSSLVKHIKAPVHLVWSL-VRRFDQP-QKYKP-FVSRCIV-QGDLQIGSVREVNVKSG-LPATTSTERLELLDDEEH  111 (214)
Q Consensus        37 ~~ve~sI~~~I~APae~VW~v-i~Df~~l-~~W~P-~V~s~~v-eG~g~VGsvR~l~~~~G-~p~~~v~ErL~~~D~~~~  111 (214)
                      .+++.++  +|+|||++||++ ++||+++ ++|+| .+++|++ +|++++|++|.+++.+| .| ..++|||+++|+++|
T Consensus         3 ~~~~~e~--~i~a~a~kvw~~~v~d~~~l~pk~~P~~i~s~~~~eGdgg~Gsvr~~~~~~g~~~-~~~kErl~~iD~~~~   79 (155)
T 2flh_A            3 KEFNTQT--ELSVRLEALWAVLSKDFITVVPKVLPHIVKDVQLIEGDGGVGTILIFNFLPEVSP-SYQREEITEFDESSH   79 (155)
T ss_dssp             EEEEEEE--EESSCHHHHHHHHHTSCTTHHHHHCTTTEEEEEEEECSSSTTCEEEEEECTTSSS-CEEEEEEEEEETTTT
T ss_pred             cEEEEEE--EecCCHHHHHHHHhcccccccchhccccceEEEEEcCCCCCCeEEEEEeeCCCCC-cEEEEEEEEEeCCCC
Confidence            5788899  999999999999 7999998 99999 5588885 89989999999999988 66 689999999999999


Q ss_pred             EEEEEEEcCcccceeeeccccccccCCCcceeeEEEEEEEeecCCCcceEEEEEEEEeeCCCCCCHHHHHHHHH--HHHH
Q 028067          112 IFGMRIVGGDHRLKIIWNFSNFISTSSSKLQNYSSIVTVHPEVIDGRPGTLVIESFVVDVPDGNTKDETCYFVE--ALIK  189 (214)
Q Consensus       112 ~~~Y~iv~g~~~~~~~~~~~~~~~~~~~p~~~y~ati~v~p~~~~gs~~t~~~~s~~~~~p~~~~~~~~~~~v~--~~~~  189 (214)
                      +++|++++|+...              .|+++|.++++|.|.+++||.++|+..++..+....    .. +...  .++.
T Consensus        80 ~~~y~iieg~~l~--------------~~~~~~~~~i~v~p~~~ggs~v~wt~~y~~~~~~~~----~~-~~~~~~~~~~  140 (155)
T 2flh_A           80 EIGLQVIEGGYLS--------------QGLSYYKTTFKLSEIEEDKTLVNVKISYDHDSDIEE----KV-TPTKTSQSTL  140 (155)
T ss_dssp             EEEEEEEEEGGGG--------------TTCSEEEEEEEEEEEETTEEEEEEEEEEEC-----------C-CHHHHHHHHH
T ss_pred             EEEEEEEeccccc--------------cCceEEEEEEEEEECCCCCEEEEEEEEEEECCCCcc----Ch-hHhhhHHHHH
Confidence            9999999997643              478999999999999877888888887765421111    11 1122  4566


Q ss_pred             HHHHHHHHHHh
Q 028067          190 CNLKSLADVSE  200 (214)
Q Consensus       190 ~gL~~L~~~le  200 (214)
                      ..++.|.++|-
T Consensus       141 ~~~k~ie~yll  151 (155)
T 2flh_A          141 MYLRRLERYLS  151 (155)
T ss_dssp             HHHHHHHHHHC
T ss_pred             HHHHHHHHHHh
Confidence            66777777663

>1tw0_A Pathogenesis-related class 10 protein SPE-16; seven antiparallel beta-sheet, plant protein; 2.20A {Pachyrhizus erosus} SCOP: d.129.3.1 PDB: 1txc_A*

Probab=99.93  E-value=7.6e-25  Score=177.47  Aligned_cols=146  Identities=12%  Similarity=0.098  Sum_probs=117.9

Q ss_pred             ceEEEEEeeeecCCHHHHHHHHh-cCCCC-CccCccceEEE-EecCCCCCeEEEEEeeCCCCcceEEEEEEEEeCCCcEE
Q 028067           37 HQCSSSLVKHIKAPVHLVWSLVR-RFDQP-QKYKPFVSRCI-VQGDLQIGSVREVNVKSGLPATTSTERLELLDDEEHIF  113 (214)
Q Consensus        37 ~~ve~sI~~~I~APae~VW~vi~-Df~~l-~~W~P~V~s~~-veG~g~VGsvR~l~~~~G~p~~~v~ErL~~~D~~~~~~  113 (214)
                      .+++.++  +|++||++||++++ ||+++ ++|+|.|++|+ ++|++++|++|.+++.+|.|..+++|||+++|++++++
T Consensus         3 ~~~~~e~--~i~a~a~kvw~~~~~d~~~~~pk~~~~i~s~~i~eG~g~~Gsir~~~~~~G~~~~~~kErl~~~D~~~~~~   80 (157)
T 1tw0_A            3 FVFRDET--SSSVAPAKLYKALTKDSDTIAQKIDGPIQSIELVEGNGGVGTIKKITANEGDKTSFVLQKVDAIDEANLGY   80 (157)
T ss_dssp             EEEEEEE--EESSCHHHHHHHHHHTGGGGGGGSCSSEEEEEEEESSSSTTCEEEEEEEETTEEEEEEEEEEEEETTTTEE
T ss_pred             EEEEEEE--EecCCHHHHHHHHhcCcchhhhhHHhhccEEEEEeCCCCCCeEEEEEeeCCCccceEEEEEEEEeccCCEE
Confidence            4678888  99999999999999 99964 89999999998 58988899999999998876568999999999999999


Q ss_pred             EEEEEcCcccceeeeccccccccCCCcceeeEEEEEEEeecCCCcceEEEEEEEEeeCCCCCCHHHHHHHHHHHHHHHHH
Q 028067          114 GMRIVGGDHRLKIIWNFSNFISTSSSKLQNYSSIVTVHPEVIDGRPGTLVIESFVVDVPDGNTKDETCYFVEALIKCNLK  193 (214)
Q Consensus       114 ~Y~iv~g~~~~~~~~~~~~~~~~~~~p~~~y~ati~v~p~~~~gs~~t~~~~s~~~~~p~~~~~~~~~~~v~~~~~~gL~  193 (214)
                      +|++++|+...              ..+++|.++++|.|.+++||.++|+..++..+ ......+.. +.....+...++
T Consensus        81 ~y~iieGd~~~--------------~~~~~~~~~~~v~~~~~~gs~v~w~~~y~~~~-~~~~~~~~~-~~~~~~~~~~~k  144 (157)
T 1tw0_A           81 DYSIVGGTGLP--------------ESLEKLSFETKVVAGSGGGSISKVTLKFHTKG-DAPLSDAVR-DDALAKGAGFFK  144 (157)
T ss_dssp             EEEEEECTTSC--------------TTEEEEEEEEEEEECSSSSEEEEEEEEEEEST-TCCCCHHHH-HHHHHHHHHHHH
T ss_pred             EEEEEecCCCc--------------cceEEEEEEEEEEecCCCCEEEEEEEEEEECC-CCCCCHHHH-HHHHHHHHHHHH
Confidence            99999997422              23799999999999877789899998887642 111222233 334566777777


Q ss_pred             HHHHHHh
Q 028067          194 SLADVSE  200 (214)
Q Consensus       194 ~L~~~le  200 (214)
                      .|.+.|-
T Consensus       145 ~ie~yll  151 (157)
T 1tw0_A          145 AIEGYVL  151 (157)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHH
Confidence            7777763

>1e09_A PRU AV 1; allergen, major cherry allergen, pathogenesis-related protein, heteronuclear structure; NMR {Prunus avium} SCOP: d.129.3.1 PDB: 1h2o_A 2lpx_A

Probab=99.93  E-value=2.6e-25  Score=180.36  Aligned_cols=146  Identities=12%  Similarity=0.113  Sum_probs=118.0

Q ss_pred             ceEEEEEeeeecCCHHHHHHHHh-cCCC-CCccCc-cceEEE-EecCCCCCeEEEEEeeCCCCcceEEEEEEEEeCCCcE
Q 028067           37 HQCSSSLVKHIKAPVHLVWSLVR-RFDQ-PQKYKP-FVSRCI-VQGDLQIGSVREVNVKSGLPATTSTERLELLDDEEHI  112 (214)
Q Consensus        37 ~~ve~sI~~~I~APae~VW~vi~-Df~~-l~~W~P-~V~s~~-veG~g~VGsvR~l~~~~G~p~~~v~ErL~~~D~~~~~  112 (214)
                      .+++.++  +|+|||++||++++ ||++ +++|+| .|++|+ ++|++++|++|.+++.+|.|..+++|||+.+|+++++
T Consensus         3 ~~~~~e~--~i~ap~~~vw~~~~~d~~~~~pk~~P~~i~s~~~~eGdgg~Gsvr~~~~~~G~~~~~~kErl~~~D~~~~~   80 (159)
T 1e09_A            3 FTYESEF--TSEIPPPRLFKAFVLDADNLVPKIAPQAIKHSEILEGDGGPGTIKKITFGEGSQYGYVKHKIDSIDKENYS   80 (159)
T ss_dssp             EEEEEEE--EESSCHHHHHHHHTTTHHHHHHHHCTTTEEEEEEEESSSSTTCEEEEEECCSSSCEEEEEEEEEEETTTTE
T ss_pred             EEEEEEE--EecCCHHHHHHHHhcCccccchhhChhhccEEEEEeCCCCCceEEEEEecCCCCceEEEEEEEEEcCCCCE
Confidence            4678888  99999999999999 9986 599999 789998 5898889999999999887656899999999999999


Q ss_pred             EEEEEEcCcccceeeeccccccccCCCcceeeEEEEEEEeecCCCcceEEEEEEEEeeCCCCCCHHHHHHHHHHHHHHHH
Q 028067          113 FGMRIVGGDHRLKIIWNFSNFISTSSSKLQNYSSIVTVHPEVIDGRPGTLVIESFVVDVPDGNTKDETCYFVEALIKCNL  192 (214)
Q Consensus       113 ~~Y~iv~g~~~~~~~~~~~~~~~~~~~p~~~y~ati~v~p~~~~gs~~t~~~~s~~~~~p~~~~~~~~~~~v~~~~~~gL  192 (214)
                      ++|++++|+...              .|+++|.++++|.|.+++||.++|+..|+... .....++.. +.....+...+
T Consensus        81 ~~y~iieG~~~~--------------~~~~~~~~~~~v~~~~~~gs~v~wt~~y~~~~-~~~~~~~~~-~~~~~~~~~~~  144 (159)
T 1e09_A           81 YSYTLIEGDALG--------------DTLEKISYETKLVASPSGGSIIKSTSHYHTKG-NVEIKEEHV-KAGKEKASNLF  144 (159)
T ss_dssp             EEEEECCCTTTG--------------GGEEEEEEEEEECCCTTSSEEEEEEEEEEECS-SCCCCHHHH-HHHHHHHHHHH
T ss_pred             EEEEEEecccCc--------------ccceEEEEEEEEEecCCCCEEEEEEEEEEECC-CCCCCHHHH-HHHHHHHHHHH
Confidence            999999997633              47899999999999887789999999887642 111122233 23455666667


Q ss_pred             HHHHHHHh
Q 028067          193 KSLADVSE  200 (214)
Q Consensus       193 ~~L~~~le  200 (214)
                      +.|.++|-
T Consensus       145 k~ie~yll  152 (159)
T 1e09_A          145 KLIETYLK  152 (159)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHH
Confidence            77777663

>4a8u_A Major pollen allergen BET V 1-J; PR-10 protein; 1.16A {Betula pendula} PDB: 4a8v_A* 4a87_A* 4a81_A* 4a80_A* 4a83_A* 4a86_A* 4a85_A* 4a88_A 4a8g_A* 1b6f_A 1btv_A 1bv1_A 1fsk_A 4a84_A* 1llt_A 1fm4_A* 3k78_A 1qmr_A

Probab=99.93  E-value=8.2e-25  Score=178.29  Aligned_cols=117  Identities=13%  Similarity=0.205  Sum_probs=103.9

Q ss_pred             ceEEEEEeeeecCCHHHHHHHH-hcCCCC-CccCc-cceEEE-EecCCCCCeEEEEEeeCCCCcceEEEEEEEEeCCCcE
Q 028067           37 HQCSSSLVKHIKAPVHLVWSLV-RRFDQP-QKYKP-FVSRCI-VQGDLQIGSVREVNVKSGLPATTSTERLELLDDEEHI  112 (214)
Q Consensus        37 ~~ve~sI~~~I~APae~VW~vi-~Df~~l-~~W~P-~V~s~~-veG~g~VGsvR~l~~~~G~p~~~v~ErL~~~D~~~~~  112 (214)
                      .+++.++  +|+|||++||+++ +||+++ ++|+| .+++|+ ++|++++|++|.+++.+|.|..+++|||+++|+++|+
T Consensus         3 ~~~~~ei--~i~a~a~kvw~~~~~d~~~l~pk~~P~~i~s~e~~eGdgg~Gsir~~~~~~g~~~~~~kErl~~iD~~~~~   80 (159)
T 4a8u_A            3 FNYETEA--TSVIPAARLFKAFILDGDNLFPKVAPQAISSVENIEGNGGPGTIKKISFPEGFPFKYVKDRVDEVDHTNFK   80 (159)
T ss_dssp             EEEEEEE--EESSCHHHHHHHHTTTHHHHHHHHCTTTCCEEEEEECSSSTTCEEEEECCTTSSCSEEEEEEEEEETTTTE
T ss_pred             EEEEEEE--EecCCHHHHHHHHhcCccccchhhCchhccEEEEEcCCCCCceEEEEEEecCCCccEEEEEEEEEccccCE
Confidence            3577888  9999999999999 999994 89999 579998 5899889999999999887767899999999999999


Q ss_pred             EEEEEEcCcccceeeeccccccccCCCcceeeEEEEEEEeecCCCcceEEEEEEEEe
Q 028067          113 FGMRIVGGDHRLKIIWNFSNFISTSSSKLQNYSSIVTVHPEVIDGRPGTLVIESFVV  169 (214)
Q Consensus       113 ~~Y~iv~g~~~~~~~~~~~~~~~~~~~p~~~y~ati~v~p~~~~gs~~t~~~~s~~~  169 (214)
                      ++|++++|+...              .++++|+++++|.|.+++||.++|+..++..
T Consensus        81 ~~y~iiegd~l~--------------~~~~~y~~ti~v~p~~~ggs~v~wt~~y~~~  123 (159)
T 4a8u_A           81 YSYSVIEGGPVG--------------DTLEKISNEIKIVATPNGGSILKINNKYHTK  123 (159)
T ss_dssp             EEEEEEEETTCB--------------TTEEEEEEEEEEEECTTSCEEEEEEEEEEES
T ss_pred             EEEEEeeCCCCc--------------cceEEEEEEEEEEECCCCceEEEEEEEEEEC
Confidence            999999997643              3689999999999988788989999888764

>2qim_A PR10.2B; trans-zeatin, cytokinin, plant hormones, plant protein, PR-1 protein, pathogenesis-related protein, allergen; HET: ZEA; 1.35A {Lupinus luteus} PDB: 3e85_A* 1xdf_A* 2k7h_A

Probab=99.93  E-value=9.3e-25  Score=176.95  Aligned_cols=145  Identities=13%  Similarity=0.119  Sum_probs=117.3

Q ss_pred             ceEEEEEeeeecCCHHHHHHHHh-cCCCC-CccCccceEEE-EecCCCCCeEEEEEeeCCCCcceEEEEEEEEeCCCcEE
Q 028067           37 HQCSSSLVKHIKAPVHLVWSLVR-RFDQP-QKYKPFVSRCI-VQGDLQIGSVREVNVKSGLPATTSTERLELLDDEEHIF  113 (214)
Q Consensus        37 ~~ve~sI~~~I~APae~VW~vi~-Df~~l-~~W~P~V~s~~-veG~g~VGsvR~l~~~~G~p~~~v~ErL~~~D~~~~~~  113 (214)
                      .+++.++  +|++||++||++++ ||+++ ++|.|.|++|+ ++|++++|++|.+++.+|.|..+++|||+++|++++++
T Consensus         4 ~~~~~e~--~i~a~a~kvw~~~~~d~~~~~pk~~~~i~s~~i~eGdgg~Gsir~~~~~~g~~~~~~kErl~~~D~~~~~~   81 (158)
T 2qim_A            4 FTFQDEY--TSTIAPAKLYKALVTDADIIIPKAVETIQSVEIVEGNGGPGTIKKLTFIEGGESKYVLHKIEAIDEANLGY   81 (158)
T ss_dssp             EEEEEEE--EESSCHHHHHHHHTTTHHHHHHHHCTTEEEEEEEESSSSTTCEEEEEEEETTEEEEEEEEEEEEEGGGTEE
T ss_pred             EEEEEEE--EecCCHHHHHHHHhcCccchhhhHHhhCcEEEEEecCCCCCeEEEEEEcCCCcceeEEEEEEEEecCCCEE
Confidence            5788888  99999999999999 99975 89999999998 57988899999999998876567999999999999999


Q ss_pred             EEEEEcCcccceeeeccccccccCCCcceeeEEEEEEEeecCCCcceEEEEEEEEeeCCCCCCHHHHHHHHHHHHHHHHH
Q 028067          114 GMRIVGGDHRLKIIWNFSNFISTSSSKLQNYSSIVTVHPEVIDGRPGTLVIESFVVDVPDGNTKDETCYFVEALIKCNLK  193 (214)
Q Consensus       114 ~Y~iv~g~~~~~~~~~~~~~~~~~~~p~~~y~ati~v~p~~~~gs~~t~~~~s~~~~~p~~~~~~~~~~~v~~~~~~gL~  193 (214)
                      +|++++|+...              ..+++|.++++|.|.+++||.++|+..++... ......+.. +.....+...++
T Consensus        82 ~y~iieG~~~~--------------~~~~~~~~~~~v~~~~~~gs~v~wt~~y~~~~-~~~~~~~~~-~~~~~~~~~~~k  145 (158)
T 2qim_A           82 NYSIVGGVGLP--------------DTIEKISFETKLVEGANGGSIGKVTIKIETKG-DAQPNEEEG-KAAKARGDAFFK  145 (158)
T ss_dssp             EEEEEEESSCC--------------CSEEEEEEEEEEEECSTTCEEEEEEEEEEEST-TCCCCHHHH-HHHHHHHHHHHH
T ss_pred             EEEEEeccCCc--------------cceEEEEEEEEEEecCCCCEEEEEEEEEEECC-CCCCCHHHH-HHHHHHHHHHHH
Confidence            99999996422              13799999999999877789899998887642 111222233 334566677777


Q ss_pred             HHHHHH
Q 028067          194 SLADVS  199 (214)
Q Consensus       194 ~L~~~l  199 (214)
                      .|.+.|
T Consensus       146 ~ie~yl  151 (158)
T 2qim_A          146 AIESYL  151 (158)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            777776

>1icx_A Protein LLR18A, LLPR10.1A; 7-stranded beta sheet, C-terminal helix, allergen; 1.95A {Lupinus luteus} SCOP: d.129.3.1 PDB: 1ifv_A

Probab=99.93  E-value=6.9e-25  Score=177.22  Aligned_cols=145  Identities=11%  Similarity=0.091  Sum_probs=118.0

Q ss_pred             ceEEEEEeeeecCCHHHHHHHHh-cCCCC-CccCccceEEE-EecCCCCCeEEEEEeeCCCCcceEEEEEEEEeCCCcEE
Q 028067           37 HQCSSSLVKHIKAPVHLVWSLVR-RFDQP-QKYKPFVSRCI-VQGDLQIGSVREVNVKSGLPATTSTERLELLDDEEHIF  113 (214)
Q Consensus        37 ~~ve~sI~~~I~APae~VW~vi~-Df~~l-~~W~P~V~s~~-veG~g~VGsvR~l~~~~G~p~~~v~ErL~~~D~~~~~~  113 (214)
                      .+++.++  +|++||++||++++ ||+++ ++|+|.|++|+ ++|++++|++|.+++.+|.|..+++|||+++|++++++
T Consensus         3 ~~~~~e~--~i~a~a~kvw~~~~~d~~~~~pk~~~~i~s~~i~eG~g~~Gsir~~~~~~G~~~~~~kErl~~~D~~~~~~   80 (155)
T 1icx_A            3 FAFENEQ--SSTVAPAKLYKALTKDSDEIVPKVIEPIQSVEIVEGNGGPGTIKKIIAIHDGHTSFVLHKLDAIDEANLTY   80 (155)
T ss_dssp             EEEEEEE--EESSCHHHHHHHHTTTHHHHHHHHSTTEEEEEEEESSSSTTCEEEEEEESSSSEEEEEEEEEEEEGGGTEE
T ss_pred             EEEEEEE--EecCCHHHHHHHHhcCcchhcchhhhhccEEEEEecCCCCCeEEEEEEecCCcceeEEEEEEEEeccCCEE
Confidence            4678888  99999999999999 99964 89999999998 58988899999999999876668999999999999999


Q ss_pred             EEEEEcCcccceeeeccccccccCCCcceeeEEEEEEEeecCCCcceEEEEEEEEeeCCCCCCHHHHHHHHHHHHHHHHH
Q 028067          114 GMRIVGGDHRLKIIWNFSNFISTSSSKLQNYSSIVTVHPEVIDGRPGTLVIESFVVDVPDGNTKDETCYFVEALIKCNLK  193 (214)
Q Consensus       114 ~Y~iv~g~~~~~~~~~~~~~~~~~~~p~~~y~ati~v~p~~~~gs~~t~~~~s~~~~~p~~~~~~~~~~~v~~~~~~gL~  193 (214)
                      +|++++|+...              ..+++|.++++|.|.+++||.++|+..|+..+ .. ..++.. +.+..++...++
T Consensus        81 ~y~iieGd~~~--------------~~~~~~~~~~~v~~~~~~gs~v~w~~~y~~~~-~~-~~~~~~-~~~~~~~~~~~k  143 (155)
T 1icx_A           81 NYSIIGGEGLD--------------ESLEKISYESKILPGPDGGSIGKINVKFHTKG-DV-LSETVR-DQAKFKGLGLFK  143 (155)
T ss_dssp             EEEEEEETTSC--------------TTEEEEEEEEEEEECGGGCEEEEEEEEEEESS-SS-CCHHHH-TTHHHHHHHHHH
T ss_pred             EEEEEecCCCc--------------cceEEEEEEEEEEecCCCCEEEEEEEEEEECC-CC-CCHHHH-HHHHHHHHHHHH
Confidence            99999996422              23799999999999877789899998887642 11 222222 334566777788


Q ss_pred             HHHHHHh
Q 028067          194 SLADVSE  200 (214)
Q Consensus       194 ~L~~~le  200 (214)
                      .|.+.|-
T Consensus       144 ~ie~yll  150 (155)
T 1icx_A          144 AIEGYVL  150 (155)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHH
Confidence            8887763

>3ie5_A Phenolic oxidative coupling protein HYP-1; hypericin, ST JOHN'S WORT, depression, allergy, PR-10 protein, cytokinin, plant hormones; HET: PGE PG4 PE8 1PE; 1.69A {Hypericum perforatum} SCOP: d.129.3.0

Probab=99.92  E-value=1.8e-24  Score=177.68  Aligned_cols=117  Identities=16%  Similarity=0.209  Sum_probs=103.4

Q ss_pred             CceEEEEEeeeecCCHHHHHHH-HhcCCCC-CccCc-cceEEEE-ecCCCCCeEEEEEeeCCCCcceEEEEEEEEeCCCc
Q 028067           36 DHQCSSSLVKHIKAPVHLVWSL-VRRFDQP-QKYKP-FVSRCIV-QGDLQIGSVREVNVKSGLPATTSTERLELLDDEEH  111 (214)
Q Consensus        36 ~~~ve~sI~~~I~APae~VW~v-i~Df~~l-~~W~P-~V~s~~v-eG~g~VGsvR~l~~~~G~p~~~v~ErL~~~D~~~~  111 (214)
                      -.+++.++  +|+|||++||++ ++||+++ ++|+| .+++|++ +|++++|++|.+++.+|.|..+++|||+++|+++|
T Consensus         9 ~~~~~~ev--~i~a~a~kvw~~~v~d~~~l~pk~~P~~v~s~e~~eGdg~~Gsir~~~~~~g~~~~~~kErl~~iD~~~~   86 (165)
T 3ie5_A            9 AYTIVKEE--ESPIAPHRLFKALVLERHQVLVKAQPHVFKSGEIIEGDGGVGTVTKITFVDGHPLTYMLHKFDEIDAANF   86 (165)
T ss_dssp             CEEEEEEE--EESSCHHHHHHHHTTTHHHHHHHHCTTTEEEEEEEESSSSTTCEEEEEECTTSSCCEEEEEEEEEEGGGT
T ss_pred             eEEEEEEE--EecCCHHHHHHHhcCCccccchhhCCcccceEEEecCCCCCCeEEEEEecCCCCCceEEEEEEEEchhcC
Confidence            46888999  999999999999 5999998 89999 5899985 89999999999999988776789999999999999


Q ss_pred             EEEEEEEcCcccceeeeccccccccCCCcceeeEEEEEEEeecCCCcceEEEEEEEEe
Q 028067          112 IFGMRIVGGDHRLKIIWNFSNFISTSSSKLQNYSSIVTVHPEVIDGRPGTLVIESFVV  169 (214)
Q Consensus       112 ~~~Y~iv~g~~~~~~~~~~~~~~~~~~~p~~~y~ati~v~p~~~~gs~~t~~~~s~~~  169 (214)
                      +++|++++|+...              .++++|+++++|. .+++||.++|+..|+..
T Consensus        87 ~~~Y~iieG~~l~--------------~~~~~y~~~i~v~-~~~ggs~vkwt~~y~~~  129 (165)
T 3ie5_A           87 YCKYTLFEGDVLR--------------DNIEKVVYEVKLE-AVGGGSKGKITVTYHPK  129 (165)
T ss_dssp             EEEEEEEEEGGGT--------------TTEEEEEEEEEEE-EETTEEEEEEEEEEEEC
T ss_pred             EEEEEEecCCCCc--------------cceEEEEEEEEEE-eCCCceEEEEEEEEEEC
Confidence            9999999997532              3689999999999 55578888888888764

>2i9y_A Major latex protein-like protein 28 or MLP-like protein 28; AT1G70830, BET V1-like, structural genomics, protein structure initiative; NMR {Arabidopsis thaliana}

Probab=99.92  E-value=1.3e-24  Score=177.78  Aligned_cols=148  Identities=16%  Similarity=0.209  Sum_probs=119.5

Q ss_pred             cCCCCCceEEEEEeeeecCCHHHHHHHH-hcCCCCCccCc-cceEEE-EecC-CCCCeEEEEEeeCCCCcceEEEEEEEE
Q 028067           31 KHDVHDHQCSSSLVKHIKAPVHLVWSLV-RRFDQPQKYKP-FVSRCI-VQGD-LQIGSVREVNVKSGLPATTSTERLELL  106 (214)
Q Consensus        31 ~~~~~~~~ve~sI~~~I~APae~VW~vi-~Df~~l~~W~P-~V~s~~-veG~-g~VGsvR~l~~~~G~p~~~v~ErL~~~  106 (214)
                      .|.+.+++++.++  +|+|||++||+++ +||..+++|+| .|++|+ ++|+ +++|++|.+++..|.+..+++|||+++
T Consensus        11 ~~~~~~~k~~~ev--~i~apa~kvw~~~~~d~~~lpk~~P~~i~s~~~~eGd~gg~Gsir~~~~~~gg~~~~~kErl~~i   88 (166)
T 2i9y_A           11 EASSLVGKLETDV--EIKASADKFHHMFAGKPHHVSKASPGNIQGCDLHEGDWGTVGSIVFWNYVHDGEAKVAKERIEAV   88 (166)
T ss_dssp             CCSSSEEEEEEEE--EESSCHHHHHGGGSSCSSCCCCSCSSCCSSCCCCSCCSCSTTCCCEEEEEETTEEEEEEEEEEEE
T ss_pred             cccCCccEEEEEE--EecCCHHHHHHHHhcccccccccccccceEEEEEcCCCCCCCeEEEEEEecCCCceEEEEEEEEE
Confidence            5789999999999  9999999999995 58999999999 899998 4798 899999999999776556899999999


Q ss_pred             eCCCcEEEEEEEcCcccceeeeccccccccCCCcceeeEEEEEEEeecC-CCcceEEEEEEEEeeCCCCCCHHHHHHHHH
Q 028067          107 DDEEHIFGMRIVGGDHRLKIIWNFSNFISTSSSKLQNYSSIVTVHPEVI-DGRPGTLVIESFVVDVPDGNTKDETCYFVE  185 (214)
Q Consensus       107 D~~~~~~~Y~iv~g~~~~~~~~~~~~~~~~~~~p~~~y~ati~v~p~~~-~gs~~t~~~~s~~~~~p~~~~~~~~~~~v~  185 (214)
                      |+++++++|++++|+. +              .++++|.++++|.|.++ +||.++|+..|+..+. .....+.   ++ 
T Consensus        89 D~~~~~~~y~iieGd~-~--------------~~~~~~~~ti~v~p~~~g~gs~v~wt~~ye~~~~-~~~~p~~---~~-  148 (166)
T 2i9y_A           89 EPDKNLITFRVIEGDL-M--------------KEYKSFLLTIQVTPKPGGPGSIVHWHLEYEKISE-EVAHPET---LL-  148 (166)
T ss_dssp             ETTTTEEEEEECCTTG-G--------------GTEEEEEEEEEEEEEEETTEEEEEEEEEEEESST-TTCCTHH---HH-
T ss_pred             eccCcEEEEEEEeCCC-C--------------CCeeEEEEEEEEEECCCCCCcEEEEEEEEEECCC-CCCCHHH---HH-
Confidence            9999999999999976 3              37899999999999854 4788888888876432 1111112   22 


Q ss_pred             HHHHHHHHHHHHHHh
Q 028067          186 ALIKCNLKSLADVSE  200 (214)
Q Consensus       186 ~~~~~gL~~L~~~le  200 (214)
                      .++...++.|.+.|-
T Consensus       149 ~~~~~~~k~ie~~l~  163 (166)
T 2i9y_A          149 QFCVEVSKEIDEHLL  163 (166)
T ss_dssp             HHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHh
Confidence            455556666666554

>2le1_A Uncharacterized protein; structural genomics, northeast structural genomics consortiu PSI-2, protein structure initiative, unknown function; NMR {Thermobifida fusca}

Probab=99.92  E-value=7.6e-25  Score=172.96  Aligned_cols=140  Identities=19%  Similarity=0.227  Sum_probs=117.2

Q ss_pred             eEEEEEeeeecCCHHHHHHHHhcCCCCCccCccceEEEE-ecC-CCCCeEEEEEeeCCCCcceEEEEEEEEeCCCcEEEE
Q 028067           38 QCSSSLVKHIKAPVHLVWSLVRRFDQPQKYKPFVSRCIV-QGD-LQIGSVREVNVKSGLPATTSTERLELLDDEEHIFGM  115 (214)
Q Consensus        38 ~ve~sI~~~I~APae~VW~vi~Df~~l~~W~P~V~s~~v-eG~-g~VGsvR~l~~~~G~p~~~v~ErL~~~D~~~~~~~Y  115 (214)
                      +++.++  +|+|||++||++++||.++++|+|.+.+|++ +|+ +++|++|.+++.+|.   .++|+|+++|+++++++|
T Consensus         3 ~v~~si--~I~ap~e~Vw~~l~d~~~~~~w~p~v~~~~~~~g~~~~~G~~r~~~~~~G~---~~~e~i~~~d~~~~~~~~   77 (151)
T 2le1_A            3 TLRRSV--EVAAPAADVWTLVGDFSAIHRWHPQVSAPTLRGASPHTPGAERVFGAGTEE---ELVERLVERDESARRLVY   77 (151)
T ss_dssp             EEEEEE--EESSCHHHHHHHHTTSGGGGGTCTTCCCEEEESSCTTSTTCEEEESSSSSS---CEEEEEEEEETTTTEEEE
T ss_pred             eEEEEE--EecCCHHHHHHHHhCcCcHHHhcCCceEEEEECCCCCCCCeEEEEEeCCCC---EEEEEEEEEeCCCCEEEE
Confidence            688889  9999999999999999999999999999986 453 679999999887774   799999999998999999


Q ss_pred             EEEcCcccceeeeccccccccCCCcceeeEEEEEEEeecCCCcceEEEEEEEEeeC-CCCCCHHHHHHHHHHHHHHHHHH
Q 028067          116 RIVGGDHRLKIIWNFSNFISTSSSKLQNYSSIVTVHPEVIDGRPGTLVIESFVVDV-PDGNTKDETCYFVEALIKCNLKS  194 (214)
Q Consensus       116 ~iv~g~~~~~~~~~~~~~~~~~~~p~~~y~ati~v~p~~~~gs~~t~~~~s~~~~~-p~~~~~~~~~~~v~~~~~~gL~~  194 (214)
                      ++++|+                 +|+++|.++++|.|.+++||.++|...+   ++ |.+.....+. +++++|+.||++
T Consensus        78 ~~~~g~-----------------~~~~~~~~~~~l~~~~~~gt~v~w~~~f---~~~p~~~~~~~~~-~~~~~~~~~L~~  136 (151)
T 2le1_A           78 TMPDPP-----------------FPITNHRAVLEVVPRDDRHCTVVWTAMF---DCSPETARELESV-IGDGVFAVGLNA  136 (151)
T ss_dssp             EEEECS-----------------SSEEEEEEEEEEEESSSSCEEEEEEEEE---EECHHHHHHHHHH-TTTTHHHHHHHH
T ss_pred             EEecCC-----------------CCceeEEEEEEEEECCCCcEEEEEEEEE---EecCCCCCHHHHH-HHHHHHHHHHHH
Confidence            999863                 3569999999999965577777776543   43 4444445566 789999999999


Q ss_pred             HHHHHhhhh
Q 028067          195 LADVSEHLA  203 (214)
Q Consensus       195 L~~~le~~a  203 (214)
                      |++.+|+..
T Consensus       137 Lk~~~e~~~  145 (151)
T 2le1_A          137 LAERYGRLE  145 (151)
T ss_dssp             HHHHTTTTS
T ss_pred             HHHHhhccc
Confidence            999998754

>2vq5_A S-norcoclaurine synthase; lyase, S- norcoclaurine biosynthesis, dopamine, hydroxybenzaldehyde; HET: MSE LDP HBA; 2.09A {Thalictrum flavum} PDB: 2vne_A*

Probab=99.91  E-value=1.7e-24  Score=183.22  Aligned_cols=117  Identities=16%  Similarity=0.222  Sum_probs=104.2

Q ss_pred             ceEEEEEeeeecCCHHHHHHH-Hh-cCCCC-CccCcc-ceEEEEecCCCCCeEEEEEeeCCCCcceEEEEEEEEeCCCcE
Q 028067           37 HQCSSSLVKHIKAPVHLVWSL-VR-RFDQP-QKYKPF-VSRCIVQGDLQIGSVREVNVKSGLPATTSTERLELLDDEEHI  112 (214)
Q Consensus        37 ~~ve~sI~~~I~APae~VW~v-i~-Df~~l-~~W~P~-V~s~~veG~g~VGsvR~l~~~~G~p~~~v~ErL~~~D~~~~~  112 (214)
                      .+++.++  +|+|||++||++ ++ ||+++ ++|.|. +++|++.|+|++|++|.+++.+|.|..+++|||+++|+++++
T Consensus        29 g~~~~ev--eI~apa~kvW~~~v~~df~~l~pk~~P~~i~s~e~~GdGg~GsIR~lt~~~G~~~~~vkErle~iDde~~~  106 (201)
T 2vq5_A           29 KVIHHEL--EVAASADDIWTVYSWPGLAKHLPDLLPGAFEKLEIIGDGGVGTILDMTFVPGEFPHEYKEKFILVDNEHRL  106 (201)
T ss_dssp             EEEEEEE--EESSCHHHHHHHHTCGGGGGGHHHHSTTSCSEEEEESSSSTTCEEEEECCTTCSSCEEEEEEEEEETTTTE
T ss_pred             eEEEEEE--EecCCHHHHHhhhhcCCcccchhhhCcccceEEEEecCCCCCeEEEEEecCCCcccEEEEEEEEEchhhCE
Confidence            4778888  999999999999 57 99998 899995 589885598899999999999887667899999999999999


Q ss_pred             EEEEEEcCcccceeeeccccccccCCCcceeeEEEEEEEeecCCCcceEEEEEEEEe
Q 028067          113 FGMRIVGGDHRLKIIWNFSNFISTSSSKLQNYSSIVTVHPEVIDGRPGTLVIESFVV  169 (214)
Q Consensus       113 ~~Y~iv~g~~~~~~~~~~~~~~~~~~~p~~~y~ati~v~p~~~~gs~~t~~~~s~~~  169 (214)
                      ++|++++|+...              .|+++|+++++|.|.+++||.++|+..|+..
T Consensus       107 ~sYsiieGd~l~--------------~~~~~y~~tikv~p~~dggs~vkWt~~ye~~  149 (201)
T 2vq5_A          107 KKVQMIEGGYLD--------------LGVTYYMDTIHVVPTGKDSCVIKSSTEYHVK  149 (201)
T ss_dssp             EEEEEEEEGGGG--------------TTEEEEEEEEEEEEEETTEEEEEEEEEEEEC
T ss_pred             EEEEEEecCccc--------------cceeEEEEEEEEEECCCCCeEEEEEEEEEEC
Confidence            999999997643              4789999999999998788999999988875

>2wql_A Major allergen DAU C 1; pathogenesis-related protein, plant defense; HET: P4C; 2.70A {Daucus carota} PDB: 2bk0_A

Probab=99.91  E-value=3.1e-23  Score=168.51  Aligned_cols=118  Identities=20%  Similarity=0.215  Sum_probs=104.9

Q ss_pred             CceEEEEEeeeecCCHHHHHHH-HhcCCCC-CccCcc-ceEEEEecCCCCCeEEEEEeeCCCCcceEEEEEEEEeCCCcE
Q 028067           36 DHQCSSSLVKHIKAPVHLVWSL-VRRFDQP-QKYKPF-VSRCIVQGDLQIGSVREVNVKSGLPATTSTERLELLDDEEHI  112 (214)
Q Consensus        36 ~~~ve~sI~~~I~APae~VW~v-i~Df~~l-~~W~P~-V~s~~veG~g~VGsvR~l~~~~G~p~~~v~ErL~~~D~~~~~  112 (214)
                      -.+++.++  ++++||+++|.+ +.|++++ |+|.|. +++++++|++++|++|.+++..|.|..+++|||+++|+++++
T Consensus         3 v~~~~~E~--~~~v~a~kl~ka~v~d~~~l~Pk~~P~~iks~~veGdg~~Gsir~~t~~~g~~~~~~kErle~iD~~~~~   80 (154)
T 2wql_A            3 AQSHSLEI--TSSVSAEKIFSGIVLDVDTVIPKAATGAYKSVEVKGDGGAGTVRIITLPEGSPITTMTVRTDAVNKEALS   80 (154)
T ss_dssp             CCEEEEEE--EESSCHHHHHHHHTTTHHHHHHHHSTTTCSEEEEESSSSTTCEEEEECCTTCSCCEEEEEEEEEETTTTE
T ss_pred             CeEEEEEE--EecCCHHHHHHHHhhcccccchhhcccceeEEEEECCCCCCeEEEEEEcCCCCceEEEEEEEEEehhhCE
Confidence            36788999  999999999975 5899996 899985 577789999999999999999887777899999999999999


Q ss_pred             EEEEEEcCcccceeeeccccccccCCCcceeeEEEEEEEeecCCCcceEEEEEEEEe
Q 028067          113 FGMRIVGGDHRLKIIWNFSNFISTSSSKLQNYSSIVTVHPEVIDGRPGTLVIESFVV  169 (214)
Q Consensus       113 ~~Y~iv~g~~~~~~~~~~~~~~~~~~~p~~~y~ati~v~p~~~~gs~~t~~~~s~~~  169 (214)
                      ++|++++|+...              .++++|+++++|.|.+++||.++|+..|+..
T Consensus        81 ~~y~iieGd~l~--------------~~~~~~~~~ikv~p~~~ggsvvk~t~~Y~~~  123 (154)
T 2wql_A           81 YDSTVIDGDILL--------------GFIESIETHMVVVPTADGGSITKTTAIFHTK  123 (154)
T ss_dssp             EEEEEEESGGGT--------------TTEEEEEEEEEEEECTTSCEEEEEEEEEEES
T ss_pred             EEEEEEeccccc--------------cceEEEEEEEEEeeCCCCcEEEEEEEEEEEC
Confidence            999999998755              5889999999999999888988888887764

>3ijt_A SMU.440, putative uncharacterized protein; hypothetical protein, unknown function; 2.38A {Streptococcus mutans} SCOP: d.129.3.9 PDB: 2b79_A

Probab=99.83  E-value=2.3e-19  Score=144.87  Aligned_cols=144  Identities=9%  Similarity=0.029  Sum_probs=112.1

Q ss_pred             hhcCCCCCceEEEEEeeeecCCHHHHHHHHhcCCCCCccCccceEEEEecCCCCCeEEEEEeeCCCCcceEEEEEEEEeC
Q 028067           29 HHKHDVHDHQCSSSLVKHIKAPVHLVWSLVRRFDQPQKYKPFVSRCIVQGDLQIGSVREVNVKSGLPATTSTERLELLDD  108 (214)
Q Consensus        29 ~~~~~~~~~~ve~sI~~~I~APae~VW~vi~Df~~l~~W~P~V~s~~veG~g~VGsvR~l~~~~G~p~~~v~ErL~~~D~  108 (214)
                      -++|+|++.+++.+|  +|+|||++||++++||.+++.|+|.+.+++++|+..+|+.+.++..+|.   .++++|+++||
T Consensus        10 ~~~~g~~~~~i~~si--~I~Appe~VW~~ltD~~~~~~W~p~v~~~~~~G~~~~G~~~~~~~~~~~---~~~~~v~~~~p   84 (155)
T 3ijt_A           10 GQQMGRGSMKFSFEL--AVNTKKEDAWTYYSQVNQWFVWEGDLEQISLEGEFTTGQKGKMKMEDMP---ELAFTLVEVRE   84 (155)
T ss_dssp             -----CCCEEEEEEE--EESSCHHHHHHHHHCGGGGGGTSTTEEEEEESSSSSTTCEEEEEETTSC---CEEEEECCCBT
T ss_pred             ccccCCCcEEEEEEE--EEcCCHHHHHHHHhCcccccccchhhEeeeccCCCCCCCEEEEEeCCCC---cEEEEEEEEeC
Confidence            357999999999999  9999999999999999999999999999988898789999988887663   68899999999


Q ss_pred             CCcEEEEEEEcCcccceeeeccccccccCCCcceeeEEEEEEEeecCCCcceEEEEEEEEeeCCCC-CCHHHHHHHHHHH
Q 028067          109 EEHIFGMRIVGGDHRLKIIWNFSNFISTSSSKLQNYSSIVTVHPEVIDGRPGTLVIESFVVDVPDG-NTKDETCYFVEAL  187 (214)
Q Consensus       109 ~~~~~~Y~iv~g~~~~~~~~~~~~~~~~~~~p~~~y~ati~v~p~~~~gs~~t~~~~s~~~~~p~~-~~~~~~~~~v~~~  187 (214)
                      . +.|+|+..                    +|...|..+..|+|.++++|.+++...   ++.+.. .....+.+.+.+.
T Consensus        85 ~-~~~~~~~~--------------------~p~~~~~~~h~l~p~~~ggTrvt~~~~---~~G~~~~~~~~~~~~~i~~~  140 (155)
T 3ijt_A           85 N-QCFSDLTA--------------------TPFGNVLFEHEILENPDGTISLRHSVS---LTDSDTTEEALAFLKQIFAD  140 (155)
T ss_dssp             T-TEEEEEEE--------------------ETTEEEEEEEEEEECTTSCEEEEEEEE---ESCCSCCHHHHHHHHHHHTT
T ss_pred             C-cEEEEEEe--------------------cCCeEEEEEEEEEEcCCCcEEEEEEEE---EECCCcchhHHHHHHHHHHH
Confidence            5 67888653                    244678888899998667775555543   332221 1122355788999


Q ss_pred             HHHHHHHHHHHHhh
Q 028067          188 IKCNLKSLADVSEH  201 (214)
Q Consensus       188 ~~~gL~~L~~~le~  201 (214)
                      +..+|++||+++|+
T Consensus       141 ~~~~l~~LK~~aE~  154 (155)
T 3ijt_A          141 VPESVGKLKQILET  154 (155)
T ss_dssp             HHHHHHHHHHHHTC
T ss_pred             HHHHHHHHHHHhhc
Confidence            99999999999986

>3tvq_A Multifunctional cyclase-dehydratase-3-O-methyl TR TCMN; tetracenomycin, aromatase, taxifolin, dihyroquercet helix-GRIP fold; HET: DQH; 1.67A {Streptomyces glaucescens} PDB: 2rer_A 2res_A 2rez_A

Probab=99.73  E-value=1.1e-16  Score=131.03  Aligned_cols=148  Identities=11%  Similarity=0.087  Sum_probs=111.2

Q ss_pred             ceEEEEEeeeecCCHHHHHHHHhcCCCCCccCccceEEEE-ecCCCCCeEEE-EE---eeCCCCcceEEEEEEEEeCCCc
Q 028067           37 HQCSSSLVKHIKAPVHLVWSLVRRFDQPQKYKPFVSRCIV-QGDLQIGSVRE-VN---VKSGLPATTSTERLELLDDEEH  111 (214)
Q Consensus        37 ~~ve~sI~~~I~APae~VW~vi~Df~~l~~W~P~V~s~~v-eG~g~VGsvR~-l~---~~~G~p~~~v~ErL~~~D~~~~  111 (214)
                      .+++.++  .|+|||++||+++.||.+++.|+|.|.++++ ++++  +.+|. +.   ..+|....+..++  .+|+.++
T Consensus         3 ~~v~~si--~I~a~~~~v~~lv~Dv~~~p~w~p~~~~~~~~~~~~--~~~~~~l~~~~~~~G~~~~~ts~~--~~d~~~~   76 (169)
T 3tvq_A            3 ARTDNSI--VVNAPFELVWDVTNDIEAWPELFSEYAEAEILRQDG--DGFDFRLKTRPDANGRVWEWVSHR--VPDKGSR   76 (169)
T ss_dssp             EEEEEEE--EESSCHHHHHHHHTCGGGHHHHCTTEEEEEEEEEET--TEEEEEEEECCCTTSCCCEEEEEE--EEEGGGT
T ss_pred             CeEEEEE--EecCCHHHHHHHHHhhhHHHHHHhheeEEEEEecCC--CEEEEEEEEEecCCCeEEEEEEEE--EEcCCCc
Confidence            4688899  9999999999999999999999999999985 4332  23332 33   2355432233343  3788888


Q ss_pred             EEEEEEEcCcccceeeeccccccccCCCcceeeEEEEEEEeecCCCcceEEEEEEEEeeCCCCCCHHHHHHHHHHHHHHH
Q 028067          112 IFGMRIVGGDHRLKIIWNFSNFISTSSSKLQNYSSIVTVHPEVIDGRPGTLVIESFVVDVPDGNTKDETCYFVEALIKCN  191 (214)
Q Consensus       112 ~~~Y~iv~g~~~~~~~~~~~~~~~~~~~p~~~y~ati~v~p~~~~gs~~t~~~~s~~~~~p~~~~~~~~~~~v~~~~~~g  191 (214)
                      ++.|+.+.+                 + |++.|.++++++|.+++ |.++|...+.. .++.+...+.+.+.+++.+..+
T Consensus        77 ~I~~~~l~~-----------------g-Pf~~~~g~W~f~p~~~g-t~V~~~~df~~-~~~~p~~~~~~~~av~~~~~~~  136 (169)
T 3tvq_A           77 TVRAHRVET-----------------G-PFAYMNLHWTYRAVAGG-TEMRWVQEFDM-KPGAPFDNAHMTAHLNTTTRAN  136 (169)
T ss_dssp             EEEEEESSC-----------------T-TEEEEEEEEEEEEETTE-EEEEEEEEEEE-CTTCSSCHHHHHHHHHHHHHHH
T ss_pred             EEEEEEcCC-----------------C-ChhheeeEEEEEECCCC-EEEEEEEEEEe-cCCCcccHHHHHHHHHhhHHHH
Confidence            999987553                 1 56999999999999854 98888887765 4444556677889999999999


Q ss_pred             HHHHHHHHhhhhhcCCCCC
Q 028067          192 LKSLADVSEHLAVQDRTEP  210 (214)
Q Consensus       192 L~~L~~~le~~a~~~~~~~  210 (214)
                      |++||+.+|+.+...+..|
T Consensus       137 L~~LK~~aE~~~~~~~~~~  155 (169)
T 3tvq_A          137 MERIKKIIEDRHREGQRTP  155 (169)
T ss_dssp             HHHHHHHHHHHHHHHC---
T ss_pred             HHHHHHHHhhhhhhcCCCc
Confidence            9999999999887666544

>3tl1_A WHIE ORF VI, polyketide cyclase; helix-GRIP fold, polyketide C9-C14 aromatase/cyclase, linear beta-ketone intermediate; HET: JRO; 1.80A {Streptomyces coelicolor} PDB: 3tvr_A 2kf2_A

Probab=99.72  E-value=3.9e-16  Score=126.51  Aligned_cols=144  Identities=11%  Similarity=0.029  Sum_probs=110.1

Q ss_pred             ceEEEEEeeeecCCHHHHHHHHhcCCCCCccCccceEEEE-ecCCCCCeEEEEE--e-eCCCCcceEEEEEEEEeCCCcE
Q 028067           37 HQCSSSLVKHIKAPVHLVWSLVRRFDQPQKYKPFVSRCIV-QGDLQIGSVREVN--V-KSGLPATTSTERLELLDDEEHI  112 (214)
Q Consensus        37 ~~ve~sI~~~I~APae~VW~vi~Df~~l~~W~P~V~s~~v-eG~g~VGsvR~l~--~-~~G~p~~~v~ErL~~~D~~~~~  112 (214)
                      .+++.++  .|+|||++||++|.|+.+++.|+|.|.++++ ++++ -+..-.++  . .+|.... .+.+. .+|+++++
T Consensus         3 ~~v~~si--~I~a~~~~V~~lV~Dve~yP~~~p~~~~~~vl~~~~-~~~~~rl~~~~~~~G~~~~-~ts~~-~~d~~~~~   77 (159)
T 3tl1_A            3 GHTDNEI--TIAAPMELVWNMTNDIEKWPGLFSEYASVEVLGRDD-DKVTFRLTMHPDADGKVWS-WVSER-VADPVTRT   77 (159)
T ss_dssp             SEEEEEE--EESSCHHHHHHHHTCGGGHHHHCSSEEEEEEEEECS-SEEEEEEEECCCTTSCCCE-EEEEE-EEETTTTE
T ss_pred             CeeEEEE--EecCCHHHHHHHHHhHHHhhhhhhCceEEEEEecCC-CEEEEEEEEEeccCceEEE-EEEEE-EEcCCCCE
Confidence            4688999  9999999999999999999999999999985 5443 22232243  2 3554322 33333 57888899


Q ss_pred             EEEEEEcCcccceeeeccccccccCCCcceeeEEEEEEEeecCCCcceEEEEEEEEeeCCCCCCHHHHHHHHHHHHHHHH
Q 028067          113 FGMRIVGGDHRLKIIWNFSNFISTSSSKLQNYSSIVTVHPEVIDGRPGTLVIESFVVDVPDGNTKDETCYFVEALIKCNL  192 (214)
Q Consensus       113 ~~Y~iv~g~~~~~~~~~~~~~~~~~~~p~~~y~ati~v~p~~~~gs~~t~~~~s~~~~~p~~~~~~~~~~~v~~~~~~gL  192 (214)
                      +.|+.+..+                  |++.+.++.+++|.++ ||.++|...+.. .+..+...+.+.+.+++.+..+|
T Consensus        78 I~~~~~~~g------------------Pf~~l~g~W~f~p~~~-gt~V~~~~df~~-~~~~p~~~~~~~~~~~~~~~~~L  137 (159)
T 3tl1_A           78 VRAQRVETG------------------PFQYMNIVWEYAETAE-GTVMRWTQDFAM-KPDAPVDDAWMTDNINRNSRTQM  137 (159)
T ss_dssp             EEEEESSCT------------------TEEEEEEEEEEEEETT-EEEEEEEEEEEE-CTTCSSCHHHHHHHHHHHHHHHH
T ss_pred             EEEEEccCC------------------ChhhccCEEEEEECCC-CEEEEEEEEEEe-cCCCCCCHHHHHHHHHhhHHHHH
Confidence            999987421                  5699999999999985 798999888765 33344556668889999999999


Q ss_pred             HHHHHHHhhhhhc
Q 028067          193 KSLADVSEHLAVQ  205 (214)
Q Consensus       193 ~~L~~~le~~a~~  205 (214)
                      ++||+.+|+.+..
T Consensus       138 ~~lK~~~E~~~~~  150 (159)
T 3tl1_A          138 ALIRDRIEQAAGE  150 (159)
T ss_dssp             HHHHHHHHHHHHH
T ss_pred             HHHHHHHhhhhhh
Confidence            9999999987653

>2d4r_A Hypothetical protein TTHA0849; start domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; 2.40A {Thermus thermophilus} SCOP: d.129.3.6

Probab=99.69  E-value=1.4e-15  Score=115.04  Aligned_cols=142  Identities=15%  Similarity=0.097  Sum_probs=101.7

Q ss_pred             eEEEEEeeeecCCHHHHHHHHhcCCCCCccCccceEEEEecCCCCCeEEEEEee-CCCCcceEEEEEEEEeCCCcEEEEE
Q 028067           38 QCSSSLVKHIKAPVHLVWSLVRRFDQPQKYKPFVSRCIVQGDLQIGSVREVNVK-SGLPATTSTERLELLDDEEHIFGMR  116 (214)
Q Consensus        38 ~ve~sI~~~I~APae~VW~vi~Df~~l~~W~P~V~s~~veG~g~VGsvR~l~~~-~G~p~~~v~ErL~~~D~~~~~~~Y~  116 (214)
                      +++.++  +|+||+++||+++.|+.++++|.|.+.++++.+....|....+++. .|.+ ...+.++...++ ++++.|+
T Consensus         3 ~~~~~~--~i~ap~~~V~~~l~d~~~~~~w~p~~~~~~~~~~~~~g~~~~~~~~~~g~~-~~~~~~~~~~~~-~~~i~~~   78 (147)
T 2d4r_A            3 EVRAER--YIPAPPERVYRLAKDLEGLKPYLKEVESLEVVAREGARTRSRWVAVAMGKK-VRWLEEEEWDDE-NLRNRFF   78 (147)
T ss_dssp             EEEEEE--EESSCHHHHHHHHHCHHHHGGGCTTEEEEEEEEEETTEEEEEEEEEETTEE-EEEEEEEEEETT-TTEEEEE
T ss_pred             eEEEEE--EeCCCHHHHHHHHhChhhhhhhcccccEEEEEEeCCCccEEEEEEEeCCce-EEEEEEEEEcCC-CcEEEEE
Confidence            577788  9999999999999999999999999998875321112544444443 3421 235566665555 7889999


Q ss_pred             EEcCcccceeeeccccccccCCCcceeeEEEEEEEeecCCCcceEEEEEEEEee-CCCCCCHHHHHHHHHHHHHHHHHHH
Q 028067          117 IVGGDHRLKIIWNFSNFISTSSSKLQNYSSIVTVHPEVIDGRPGTLVIESFVVD-VPDGNTKDETCYFVEALIKCNLKSL  195 (214)
Q Consensus       117 iv~g~~~~~~~~~~~~~~~~~~~p~~~y~ati~v~p~~~~gs~~t~~~~s~~~~-~p~~~~~~~~~~~v~~~~~~gL~~L  195 (214)
                      +.+|                   |++.+.++++++|.+ +||.++|...+.... .+.......+...++..+...|++|
T Consensus        79 ~~~g-------------------~~~~~~~~~~~~~~~-~gT~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l  138 (147)
T 2d4r_A           79 SPEG-------------------DFDRYEGTWVFLPEG-EGTRVVLTLTYELTIPIFGGLLRKLVQKLMQENVESLLKGL  138 (147)
T ss_dssp             EEEE-------------------SCSEEEEEEEEEECS-SSEEEEEEEEEECCCTTTTTTTHHHHHHHHHHHHHHHHHHH
T ss_pred             eccC-------------------ChhheEEEEEEEECC-CCcEEEEEEEEecCCccHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            8875                   336778999999987 458777777654321 1333444455567779999999999


Q ss_pred             HHHHhhhh
Q 028067          196 ADVSEHLA  203 (214)
Q Consensus       196 ~~~le~~a  203 (214)
                      ++.+|+.+
T Consensus       139 k~~~e~~~  146 (147)
T 2d4r_A          139 EERVLAAS  146 (147)
T ss_dssp             HHHHHHTT
T ss_pred             HHHHHhhc
Confidence            99999865

>3tfz_A Cyclase; helix-GRIP, BET V1-like superfamily, biosynthetic protein; HET: CXS; 2.39A {Streptomyces SP}

Probab=99.65  E-value=3e-15  Score=121.13  Aligned_cols=149  Identities=14%  Similarity=0.109  Sum_probs=106.3

Q ss_pred             ceEEEEEeeeecCCHHHHHHHHhcCCCCCccCccceEEEE-ecCCCCCeEEEEEee-CCCCcceEEEEEEEEeCCCcEEE
Q 028067           37 HQCSSSLVKHIKAPVHLVWSLVRRFDQPQKYKPFVSRCIV-QGDLQIGSVREVNVK-SGLPATTSTERLELLDDEEHIFG  114 (214)
Q Consensus        37 ~~ve~sI~~~I~APae~VW~vi~Df~~l~~W~P~V~s~~v-eG~g~VGsvR~l~~~-~G~p~~~v~ErL~~~D~~~~~~~  114 (214)
                      .+++.++  +|++||++||+++.||.++++|+|.|.++++ +.++ .+..-.+.+. +|.. ....+++ .+|+.++++.
T Consensus         5 ~~v~~si--~I~ap~~~V~~~v~D~~~~p~~~P~~~~~~v~~~~~-~~~~~~~~~~~~G~~-~~~~s~~-~~~~~~~~i~   79 (172)
T 3tfz_A            5 RHVEHTV--TVAAPADLVWEVLADVLGYADIFPPTEKVEILEEGQ-GYQVVRLHVDVAGEI-NTWTSRR-DLDPARRVIA   79 (172)
T ss_dssp             EEEEEEE--EESSCHHHHHHHHHCGGGHHHHCSSEEEEEEEEEET-TEEEEEEEEEETTEE-EEEEEEE-EEETTTTEEE
T ss_pred             cEEEEEE--EeCCCHHHHHHHHHhHHHHHhhCcccceEEEEecCC-CEEEEEEEEecCCEE-EEEEEEE-EEeCCCCEEE
Confidence            4688899  9999999999999999999999999999986 3322 1222223333 4532 1233333 4788788999


Q ss_pred             EEEEcCcccceeeeccccccccCCCcceeeEEEEEEEeecCCCcceEEEEEEEEeeCCC-----C------CCHHHHHHH
Q 028067          115 MRIVGGDHRLKIIWNFSNFISTSSSKLQNYSSIVTVHPEVIDGRPGTLVIESFVVDVPD-----G------NTKDETCYF  183 (214)
Q Consensus       115 Y~iv~g~~~~~~~~~~~~~~~~~~~p~~~y~ati~v~p~~~~gs~~t~~~~s~~~~~p~-----~------~~~~~~~~~  183 (214)
                      |+.++++.                 |++.+.++++++|.++++|.++|...+.... +.     +      .....+.+.
T Consensus        80 ~~~~~~~g-----------------pf~~~~g~w~f~~~~~~~t~V~~~~~~~~~~-~~l~~~lg~~~~~~~~~~~~~~~  141 (172)
T 3tfz_A           80 YRQLETAP-----------------IVGHMSGEWRAFTLDAERTQLVLTHDFVTRA-AGDDGLVAGKLTPDEAREMLEAV  141 (172)
T ss_dssp             EEEEECCT-----------------TEEEEEEEEEEEEEETTEEEEEEEEEEEECC-CCTTSSBTTTBCHHHHHHHHHHH
T ss_pred             EEEeeCCC-----------------ChhhcEEEEEEEECCCCcEEEEEEEEEEEcC-hhHHHhhccccCchhhHHHHHHH
Confidence            99997533                 5589999999999877788888888765421 11     1      012235566


Q ss_pred             HHHHHHHHHHHHHHHHhhhhhcCCC
Q 028067          184 VEALIKCNLKSLADVSEHLAVQDRT  208 (214)
Q Consensus       184 v~~~~~~gL~~L~~~le~~a~~~~~  208 (214)
                      ++.-....|++||+.+|+.++.+..
T Consensus       142 l~~~~~~~L~~lk~~aE~~~~~~~~  166 (172)
T 3tfz_A          142 VERNSVADLNAVLGEAERRVRAAGG  166 (172)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred             HhcccHHHHHHHHHHHHHHHhhcCC
Confidence            7777788999999999997765543

>1vjh_A BET V I allergen family; structural genomics, center for eukaryotic structural genomics, protein structure initiative, CESG, plant protein; 2.10A {Arabidopsis thaliana} SCOP: d.129.3.1 PDB: 2q3q_A

Probab=99.55  E-value=1.8e-13  Score=106.56  Aligned_cols=89  Identities=16%  Similarity=0.187  Sum_probs=74.4

Q ss_pred             CceEEEEEeeeecCCHHHHHHHHhcCCCCCccCccceEEEEecCCCCCeEEEEEeeCCCCcceEEEEEEEEeCCCcEEEE
Q 028067           36 DHQCSSSLVKHIKAPVHLVWSLVRRFDQPQKYKPFVSRCIVQGDLQIGSVREVNVKSGLPATTSTERLELLDDEEHIFGM  115 (214)
Q Consensus        36 ~~~ve~sI~~~I~APae~VW~vi~Df~~l~~W~P~V~s~~veG~g~VGsvR~l~~~~G~p~~~v~ErL~~~D~~~~~~~Y  115 (214)
                      .++++.++  +|++||++||+++.+++.++ |.+.                      |.   .   ||+++|+++++++|
T Consensus         4 ~g~~~~e~--~i~~~a~k~w~~~~~~~~~p-~g~~----------------------G~---~---~ie~iD~~~~~~~y   52 (122)
T 1vjh_A            4 KGALSVKF--DVKCPADKFFSAFVEDTNRP-FEKN----------------------GK---T---EIEAVDLVKKTMTI   52 (122)
T ss_dssp             EEEEEEEE--EESSCHHHHHHHHHHHTTSC-SSTT----------------------CE---E---EEEEEETTTTEEEE
T ss_pred             CcEEEEEE--EecCCHHHHHHHHhhcccCC-ccCC----------------------Cc---c---EEEEEecccCEEEE
Confidence            36889999  99999999999999997665 5332                      32   1   99999999999999


Q ss_pred             EEEcCcccceeeeccccccccCCCcceeeEEEEEEEeec-CCCcceEEEEEEEEee
Q 028067          116 RIVGGDHRLKIIWNFSNFISTSSSKLQNYSSIVTVHPEV-IDGRPGTLVIESFVVD  170 (214)
Q Consensus       116 ~iv~g~~~~~~~~~~~~~~~~~~~p~~~y~ati~v~p~~-~~gs~~t~~~~s~~~~  170 (214)
                      ++++|+...               ++++|.++++|.|.. ++||.++|+..|+..+
T Consensus        53 ~iieGd~~~---------------~~~~~~~~~~v~~~~~~~gs~vkwt~~ye~~~   93 (122)
T 1vjh_A           53 QMSGSEIQK---------------YFKTLKGSIAVTPIGVGDGSHVVWTFHFEKVH   93 (122)
T ss_dssp             EEECTTGGG---------------TEEEEEEEEEEEECSSSSCEEEEEEEEEEESS
T ss_pred             EEEEccccc---------------cEEEEEEEEEEEEecCCCCeEEEEEEEEEECC
Confidence            999997432               789999999999984 4789999999988753

>3ggn_A Uncharacterized protein DR_A0006; structural genomics, PSI- 2, protein structure initiative, northeast structural genomics consortium; 2.00A {Deinococcus radiodurans R1} PDB: 2kcz_A

Probab=99.49  E-value=7.7e-13  Score=105.07  Aligned_cols=138  Identities=13%  Similarity=0.079  Sum_probs=97.0

Q ss_pred             CceEEEEEeeeecCCHHHHHHHHhcCCCCCccCccceEEEEecCCCCCeEEEEEeeCC-CCcceEEEEEEEEeCCCcEEE
Q 028067           36 DHQCSSSLVKHIKAPVHLVWSLVRRFDQPQKYKPFVSRCIVQGDLQIGSVREVNVKSG-LPATTSTERLELLDDEEHIFG  114 (214)
Q Consensus        36 ~~~ve~sI~~~I~APae~VW~vi~Df~~l~~W~P~V~s~~veG~g~VGsvR~l~~~~G-~p~~~v~ErL~~~D~~~~~~~  114 (214)
                      ..++++++  +|+||+++||++++|+.++++|.|.+.++++.+++  +..-.+....| .+ ...+.++++.+| ++.+.
T Consensus         3 ~~~v~~s~--~I~ap~e~V~~~~~D~e~~p~w~p~~~~v~~~~~~--~~~~~~~~~~G~~~-~~~~~~v~e~~p-~~~i~   76 (155)
T 3ggn_A            3 ETVVRDAV--TIGKPAEQLYAVWRDLPGLPLLMTHLRSVEVLDDK--RSRWTVEAPAPLGT-VSWEAELTADEP-GKRIA   76 (155)
T ss_dssp             -CEEEEEE--EESSCHHHHHHHHHCGGGHHHHSTTCCEEEECSSS--EEEEEEECCTTTCE-EEEEEEEEEEET-TTEEE
T ss_pred             ccEEEEEE--EEcCCHHHHHHHHhCHHHhHHHhhhceEEEEecCC--eeEEEEEecCCcce-EEEEEEEEEecC-CCEEE
Confidence            46789999  99999999999999999999999999999764321  22223344335 43 346778888887 57889


Q ss_pred             EEEEcCcccceeeeccccccccCCCcceeeEEEEEEEee-cCCCcceEEEEEEEEeeCCCCCC----HHHHHHHHHHHHH
Q 028067          115 MRIVGGDHRLKIIWNFSNFISTSSSKLQNYSSIVTVHPE-VIDGRPGTLVIESFVVDVPDGNT----KDETCYFVEALIK  189 (214)
Q Consensus       115 Y~iv~g~~~~~~~~~~~~~~~~~~~p~~~y~ati~v~p~-~~~gs~~t~~~~s~~~~~p~~~~----~~~~~~~v~~~~~  189 (214)
                      |+.++|+                   ...+.+++++.|. ++++|.+++.+.+.   +|.+..    ...+..+.+.+++
T Consensus        77 ~~~~~g~-------------------~~~~~g~~~F~~~~~~~gT~V~~~~~~~---~~~~~l~~~~~~~~~~~~~~~v~  134 (155)
T 3ggn_A           77 WRSLPGA-------------------RIENSGEVLFRPAPGARGTEVVVRLTYR---PPGGSAGAVIARMFNQEPSQQLR  134 (155)
T ss_dssp             EEECTTC-------------------SSCEEEEEEEEECSSSSCEEEEEEEEEC-------------------CHHHHHH
T ss_pred             EEECCCC-------------------CcceEEEEEEEECCCCCceEEEEEEEEE---CCCcHHHHHHHHHhhhhHHHHHH
Confidence            9998762                   2467888999998 45688888887654   333222    2334445788899


Q ss_pred             HHHHHHHHHHhh
Q 028067          190 CNLKSLADVSEH  201 (214)
Q Consensus       190 ~gL~~L~~~le~  201 (214)
                      +.|+.||+.+|.
T Consensus       135 ~~l~r~k~~~e~  146 (155)
T 3ggn_A          135 DDLMRFKREQEL  146 (155)
T ss_dssp             HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHh
Confidence            999999999986

>2pcs_A Conserved protein; structural genomics, unknown function, ligand binding, PSI-2 structure initiative; HET: UNL; 2.40A {Geobacillus kaustophilus} SCOP: d.129.3.10

Probab=99.41  E-value=5.3e-12  Score=99.54  Aligned_cols=143  Identities=11%  Similarity=0.025  Sum_probs=96.7

Q ss_pred             eEEEEEeeeecCCHHHHHHHHhcCCCCCccCccceEEEEecCCCCCeEEEEEeeCCCCcceE--EEEEEEEeCCCcEEEE
Q 028067           38 QCSSSLVKHIKAPVHLVWSLVRRFDQPQKYKPFVSRCIVQGDLQIGSVREVNVKSGLPATTS--TERLELLDDEEHIFGM  115 (214)
Q Consensus        38 ~ve~sI~~~I~APae~VW~vi~Df~~l~~W~P~V~s~~veG~g~VGsvR~l~~~~G~p~~~v--~ErL~~~D~~~~~~~Y  115 (214)
                      +++.++  +|+||+++||+++.|+.+++.|.|.+.++++.+++  +....+++..|.-....  +-++.++|+. +++.+
T Consensus         4 ~i~~~~--~i~ap~e~Vw~~l~D~e~~~~w~p~~~~~~~~~~~--~~~~~~~~~~g~~~~~~~~~~~~~~~~~~-~~~~~   78 (162)
T 2pcs_A            4 NGNGSI--ELKGTVEEVWSKLMDPSILSKCIMGCKSLELIGED--KYKADLQIGIAAVKGKYDAIIEVTDIKPP-YHYKL   78 (162)
T ss_dssp             EEEEEE--EEESCHHHHHHHHTCHHHHHHHSTTEEEEEEEETT--EEEEEEEECCGGGCEEEEEEEEEEEEETT-TEEEE
T ss_pred             EEeeEE--EecCCHHHHHHHhcCHHHHHhhCCCceEeEEeCCC--eEEEEEEEEeeeEEEEEEEEEEEEecCCC-cEEEE
Confidence            577788  99999999999999999999999999888764322  12233444433111123  3467788884 66777


Q ss_pred             EEEcCcccceeeeccccccccCCCcceeeEEEEEEEeecCCCcceEEEEEEEEeeCCCCCCHHHHHHHHHHHHHHHHHHH
Q 028067          116 RIVGGDHRLKIIWNFSNFISTSSSKLQNYSSIVTVHPEVIDGRPGTLVIESFVVDVPDGNTKDETCYFVEALIKCNLKSL  195 (214)
Q Consensus       116 ~iv~g~~~~~~~~~~~~~~~~~~~p~~~y~ati~v~p~~~~gs~~t~~~~s~~~~~p~~~~~~~~~~~v~~~~~~gL~~L  195 (214)
                      +....+.                .+...+..+++|.|.++++|.++|........+-.......+..+.+.++.+.+++|
T Consensus        79 ~~~~~~~----------------~~~~~~~~~~~l~~~~~~gT~v~~~~~~~~~g~l~~~~~~l~~~~~~~~~~~~~~~l  142 (162)
T 2pcs_A           79 LVNGEGG----------------PGFVNAEGVIDLTPINDECTQLTYTYSAEVGGKVAAIGQRMLGGVAKLLISDFFKKI  142 (162)
T ss_dssp             EEEEEET----------------TEEEEEEEEEEEEESSSSEEEEEEEEEEEEESGGGGGCHHHHHHHHHHHHHHHHHHH
T ss_pred             EEEecCC----------------CccEEEEEEEEEEecCCCcEEEEEEEEEEECCCHHHhhHHHHHHHHHHHHHHHHHHH
Confidence            6643211                123567899999995557787888777654322222334456667788888889999


Q ss_pred             HHHHhh
Q 028067          196 ADVSEH  201 (214)
Q Consensus       196 ~~~le~  201 (214)
                      ++.+|+
T Consensus       143 k~~~e~  148 (162)
T 2pcs_A          143 QKEIAK  148 (162)
T ss_dssp             HHHHHH
T ss_pred             HHHhcc
Confidence            999986

>1t17_A Conserved hypothetical protein; beta-alpha-beta-BETA-beta-BETA-beta-BETA-helix, structural G protein structure initiative, PSI, NESG; NMR {Caulobacter crescentus} SCOP: d.129.3.6

Probab=99.41  E-value=4.8e-12  Score=98.91  Aligned_cols=139  Identities=12%  Similarity=0.080  Sum_probs=94.0

Q ss_pred             eEEEEEeeeecCCHHHHHHHHhcCCCCCccCccceEEEE-e-cC-CC-CCeEEEEEeeCCCCcceEEEEEEEEeCCCcEE
Q 028067           38 QCSSSLVKHIKAPVHLVWSLVRRFDQPQKYKPFVSRCIV-Q-GD-LQ-IGSVREVNVKSGLPATTSTERLELLDDEEHIF  113 (214)
Q Consensus        38 ~ve~sI~~~I~APae~VW~vi~Df~~l~~W~P~V~s~~v-e-G~-g~-VGsvR~l~~~~G~p~~~v~ErL~~~D~~~~~~  113 (214)
                      +++.++  +|++|+++||+++.|+.++++|.|.|.++++ + ++ ++ .+....+.+.-+.-....+.+++ +|+.++.+
T Consensus         3 ~~~~s~--~i~ap~~~v~~~v~D~~~~p~~~p~~~~~~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~v~-~~~~~~~i   79 (148)
T 1t17_A            3 RHVVTK--VLPYTPDQLFELVGDVDAYPKFVPWITGMRTWNGRVDGAVSTVDAEAQVGFSFLREKFATRVR-RDKDARSI   79 (148)
T ss_dssp             EEEEEE--EESSCTHHHHHHHTTTTCCSSCCSSCCCCCEEEEEEETTEEEEEEEEECSTTSSCCEEEEEEE-EETTTCEE
T ss_pred             EEEEEE--EecCCHHHHHHHHHHHhhHHhhCCCcCeeEEEEecCCCCCceEEEEEEEEecceeEEEEEEEE-EcCCCcEE
Confidence            578888  9999999999999999999999999998875 3 22 11 22333444432211134566776 57766689


Q ss_pred             EEEEEcCcccceeeeccccccccCCCcceeeEEEEEEEeecCCCcceEEEEEEEEeeCCCCCCHHHHHHHHHHHHHHHHH
Q 028067          114 GMRIVGGDHRLKIIWNFSNFISTSSSKLQNYSSIVTVHPEVIDGRPGTLVIESFVVDVPDGNTKDETCYFVEALIKCNLK  193 (214)
Q Consensus       114 ~Y~iv~g~~~~~~~~~~~~~~~~~~~p~~~y~ati~v~p~~~~gs~~t~~~~s~~~~~p~~~~~~~~~~~v~~~~~~gL~  193 (214)
                      .++.++|                   |++.+.+..++.|.++ ||.+++.+.+   +++.+.....+..++....+..++
T Consensus        80 ~~~~~~G-------------------~f~~~~g~w~f~~~~~-gt~v~~~~~~---~~~~~l~~~l~~~~~~~~~~~~~~  136 (148)
T 1t17_A           80 DVSLLYG-------------------PFKRLNNGWRFMPEGD-ATRVEFVIEF---AFKSALLDAMLAANVDRAAGKLIA  136 (148)
T ss_dssp             EEEESST-------------------TSSCEEEEEEEEEETT-EEEEEEEEEE---CCSCHHHHHHHHHHHHHHHHHHHH
T ss_pred             EEEECCC-------------------ChhccEEEEEEEECCC-CeEEEEEEEE---EECcHHHHHHHHHHHHHHHHHHHH
Confidence            9999886                   3478899999999874 4877777764   333332233444555566666666


Q ss_pred             HHHHHHhhh
Q 028067          194 SLADVSEHL  202 (214)
Q Consensus       194 ~L~~~le~~  202 (214)
                      ++.++++++
T Consensus       137 ~f~~r~~~~  145 (148)
T 1t17_A          137 CFEARAQQL  145 (148)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHH
Confidence            666666553

>2ns9_A Hypothetical protein APE2225; uncharacterized conserved protein, structural genomics, PSI, structure initiative; 1.80A {Aeropyrum pernix} SCOP: d.129.3.10

Probab=99.40  E-value=1.6e-11  Score=95.51  Aligned_cols=141  Identities=13%  Similarity=0.085  Sum_probs=95.6

Q ss_pred             eEEEEEeeeecCCHHHHHHHHhcCCCCCccCccceEEEEecCCCCCeEEEEEeeCCCCcc--eEEEEEEEEeCCCcEEEE
Q 028067           38 QCSSSLVKHIKAPVHLVWSLVRRFDQPQKYKPFVSRCIVQGDLQIGSVREVNVKSGLPAT--TSTERLELLDDEEHIFGM  115 (214)
Q Consensus        38 ~ve~sI~~~I~APae~VW~vi~Df~~l~~W~P~V~s~~veG~g~VGsvR~l~~~~G~p~~--~v~ErL~~~D~~~~~~~Y  115 (214)
                      +++.++  +|+||+++||++++|+.+++.|.|.+.+++..|.   +....++...|.-..  ..+-++.++++ .+++.|
T Consensus        14 ~i~~~~--~i~ap~e~Vw~~l~D~~~~~~w~p~~~~~~~~~~---~~~~~~~~~~g~~~~~~~~~~~~~~~~~-~~~i~~   87 (157)
T 2ns9_A           14 RYEGSF--EVSKTPEEVFEFLTDPKRFSRAFPGFKSVEVEDG---SFTIELRLSLGPLRGDARVRASFEDLEK-PSKATV   87 (157)
T ss_dssp             EEEEEE--EESSCHHHHHHHHTCHHHHGGGSTTEEEEEEETT---EEEEEEEEESSSSEEEEEEEEEEEEEET-TTEEEE
T ss_pred             EEeeEE--EEcCCHHHHHHHHcCHHHHHhhCCCceEEEECCC---EEEEEEEEEEcceeEEEEEEEEEEecCC-CcEEEE
Confidence            577777  9999999999999999999999999987773321   222223443332111  23345668887 467777


Q ss_pred             EEEcCcccceeeeccccccccCCCcceeeEEEEEEEeecCCCcceEEEEEEEEeeCCCCCCHHHHHHHHHHHHHHHHHHH
Q 028067          116 RIVGGDHRLKIIWNFSNFISTSSSKLQNYSSIVTVHPEVIDGRPGTLVIESFVVDVPDGNTKDETCYFVEALIKCNLKSL  195 (214)
Q Consensus       116 ~iv~g~~~~~~~~~~~~~~~~~~~p~~~y~ati~v~p~~~~gs~~t~~~~s~~~~~p~~~~~~~~~~~v~~~~~~gL~~L  195 (214)
                      +....+. .              .|+ .+..++++.|.+ +||.+++...+....+........+..+++..+.+.+++|
T Consensus        88 ~~~~~~~-~--------------~~~-~~~~~~~l~~~~-~gT~v~~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~l  150 (157)
T 2ns9_A           88 KGSGRGA-G--------------STL-DFTLRFAVEPSG-GGSRVSWVFEGNVGGLAASMGGRVLDSLARRMINDVISGV  150 (157)
T ss_dssp             EEEEECS-S--------------EEE-EEEEEEEEEEET-TEEEEEEEEEEEEEEGGGGSCHHHHHHHHHHHHHHHHHHH
T ss_pred             EEEecCC-C--------------ccE-EEEEEEEEEeCC-CcEEEEEEEEEEECcCHHHhhHHHHHHHHHHHHHHHHHHH
Confidence            6532111 0              122 378899999987 7888888876654332233445567788888999999999


Q ss_pred             HHHHhh
Q 028067          196 ADVSEH  201 (214)
Q Consensus       196 ~~~le~  201 (214)
                      ++.+|+
T Consensus       151 k~~~e~  156 (157)
T 2ns9_A          151 KRELGE  156 (157)
T ss_dssp             HHHHTC
T ss_pred             HHHHhc
Confidence            999885

>2leq_A Uncharacterized protein; start domains, structural genomics, PSI-biology, protein STR initiative; NMR {Cytophaga hutchinsonii}

Probab=99.26  E-value=2.1e-10  Score=87.56  Aligned_cols=141  Identities=13%  Similarity=0.024  Sum_probs=94.7

Q ss_pred             CceEEEEEeeeecCCHHHHHHHHhcCCCCCccCccceEEEEecCCCCCeEEEEEeeCCCCcceEEEEEEEEeCCCcEEEE
Q 028067           36 DHQCSSSLVKHIKAPVHLVWSLVRRFDQPQKYKPFVSRCIVQGDLQIGSVREVNVKSGLPATTSTERLELLDDEEHIFGM  115 (214)
Q Consensus        36 ~~~ve~sI~~~I~APae~VW~vi~Df~~l~~W~P~V~s~~veG~g~VGsvR~l~~~~G~p~~~v~ErL~~~D~~~~~~~Y  115 (214)
                      +.+++.++  +|+||+++||++++|+..++.|.+.. .+  +++..+|....+...++.....+..++++++| .+++.|
T Consensus         4 ~~~i~~~~--~i~ap~e~Vw~~ltd~~~~~~W~~~~-~~--~~~~~~G~~~~~~~~~~g~~~~~~~~v~~~~p-~~~l~~   77 (146)
T 2leq_A            4 KLIAQVKT--VINAPIEKVWEALVNPEIIKEYMFGT-TV--VSDWKEGSQIVWKGEWKGKAYEDKGTILQFNE-RSILQY   77 (146)
T ss_dssp             CEEEEEEE--EECSCHHHHHHHHSCTTHHHHHSSSC-EE--ECCCSTTCEEEEEEEETTEEEEEEEEEEEEET-TTEEEE
T ss_pred             CceEEEEE--EECCCHHHHHHHHcCHHHhceeEcCC-cc--eeccCCCCEEEEEecCCCceecccEEEEEEcC-CCEEEE
Confidence            45778888  99999999999999999999996311 12  34445676655655543211247788999999 578888


Q ss_pred             EEEcCcccceeeeccccccccCCCcceeeEEEEEEEeecCCCcceEEEEEEEEeeCCCCCCHHHHHHHHHHHHHHHHHHH
Q 028067          116 RIVGGDHRLKIIWNFSNFISTSSSKLQNYSSIVTVHPEVIDGRPGTLVIESFVVDVPDGNTKDETCYFVEALIKCNLKSL  195 (214)
Q Consensus       116 ~iv~g~~~~~~~~~~~~~~~~~~~p~~~y~ati~v~p~~~~gs~~t~~~~s~~~~~p~~~~~~~~~~~v~~~~~~gL~~L  195 (214)
                      +.......+            ...+-.....+++|+|.+ +||.+++....+    +..    .....+..-+...|++|
T Consensus        78 ~~~~~~~g~------------~~~~~~~~~~~~~l~~~~-~gT~l~~~~~~~----~~~----~~~~~~~~gw~~~l~~L  136 (146)
T 2leq_A           78 SHFSPLTGK------------PDLPENYHVVTITLTALK-KGVEVELTQDNN----ETE----KEQKHSEDNWNTMLEGL  136 (146)
T ss_dssp             ECBCGGGCC------------CSCGGGSCEEEEEEEECS-SCEEEEEEEEEE----SSH----HHHHHHHHHHHHHHHHH
T ss_pred             EEccCccCC------------CCCCCCceEEEEEEEEcC-CCeEEEEEEecC----Cch----hhHhhHHhhHHHHHHHH
Confidence            875321100            001224678899999986 677666554321    221    34456677888999999


Q ss_pred             HHHHhhhh
Q 028067          196 ADVSEHLA  203 (214)
Q Consensus       196 ~~~le~~a  203 (214)
                      ++.+|+..
T Consensus       137 k~~le~~~  144 (146)
T 2leq_A          137 KKFLENKV  144 (146)
T ss_dssp             HHHHGGGG
T ss_pred             HHHHhccc
Confidence            99999754

>1xn6_A Hypothetical protein BC4709; structural genomics, protein structure initiative, PSI, NESG target protein BCR68, alpha + beta; NMR {Bacillus cereus} SCOP: d.129.3.5

Probab=99.13  E-value=3.3e-10  Score=87.78  Aligned_cols=132  Identities=12%  Similarity=0.054  Sum_probs=91.0

Q ss_pred             CCceEEEEEeeeecCCHHHHHHHHhcCCCCCccCccceEEEEecCCCCCeEEEEEeeCCCCcceEEEEEEEEeCCCcEEE
Q 028067           35 HDHQCSSSLVKHIKAPVHLVWSLVRRFDQPQKYKPFVSRCIVQGDLQIGSVREVNVKSGLPATTSTERLELLDDEEHIFG  114 (214)
Q Consensus        35 ~~~~ve~sI~~~I~APae~VW~vi~Df~~l~~W~P~V~s~~veG~g~VGsvR~l~~~~G~p~~~v~ErL~~~D~~~~~~~  114 (214)
                      ...+++.++  .|+||+++||+++.|+..++.|.|.   +  +++..+|....+....|    .+.-+++++++ .+++.
T Consensus         6 ~~~~i~~~~--~i~ap~e~Vw~~ltd~~~~~~W~~~---~--~~~~~~G~~~~~~~~~g----~~~~~v~e~~p-~~~l~   73 (143)
T 1xn6_A            6 TLNDIKQTI--VFNASIQKVWSVVSTAEGIASWFMP---N--DFVLEVGHEFHVQSPFG----PSPCKVLEIDE-PNHLS   73 (143)
T ss_dssp             SCCCEEEEE--EESSCHHHHHHTTSCSHHHHTTSCC---B--CCCCCTTCEECBCCTTC----CCCEEEEEEET-TTEEE
T ss_pred             CCCEEEEEE--EEcCCHHHHHHHHhCHhHHHHhcCC---C--CcCcCCCCEEEEEEcCC----CceEEEEEEeC-CCEEE
Confidence            455688888  9999999999999999999999986   2  34445677665555434    25778999999 57788


Q ss_pred             EEEEcCcccceeeeccccccccCCCcceeeEEEEEEEeecCCCcceEEEEEEEEeeCCCC-----CCHHHHHHHHHHHHH
Q 028067          115 MRIVGGDHRLKIIWNFSNFISTSSSKLQNYSSIVTVHPEVIDGRPGTLVIESFVVDVPDG-----NTKDETCYFVEALIK  189 (214)
Q Consensus       115 Y~iv~g~~~~~~~~~~~~~~~~~~~p~~~y~ati~v~p~~~~gs~~t~~~~s~~~~~p~~-----~~~~~~~~~v~~~~~  189 (214)
                      |+...+                      ....+++|+|.++++|.+++....+. ..++.     ...+.....+..-+.
T Consensus        74 ~~~~~~----------------------~~~~~~~l~~~~~g~T~l~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~Gw~  130 (143)
T 1xn6_A           74 FSWDTD----------------------GWVVSFDLKDLGDNKTEFTLIHGGWK-HPDEILPKANAKSSIIRDRMSGGWV  130 (143)
T ss_dssp             EEETTT----------------------TEEEEEEEEEEETTEEEEEEEEECCC-STTCBCTTTCSBHHHHHHHHHHHHH
T ss_pred             EEEeCC----------------------CEEEEEEEEECCCCcEEEEEEEEccC-ccccccccccchhhHHHHHHHHhHH
Confidence            877331                      45778899998744675555443221 11111     112344456677788


Q ss_pred             HHH-HHHHHHHhh
Q 028067          190 CNL-KSLADVSEH  201 (214)
Q Consensus       190 ~gL-~~L~~~le~  201 (214)
                      ..| +.|++.+|+
T Consensus       131 ~~l~~~L~~~le~  143 (143)
T 1xn6_A          131 AIVNEKLKKVVEG  143 (143)
T ss_dssp             HHHTTHHHHHHHC
T ss_pred             HHHHHHHHHHhcC
Confidence            899 999998874

>1z94_A Conserved hypothetical protein; NESG, CV1439, structural genomics, PSI structure initiative; 2.10A {Chromobacterium violaceum} SCOP: d.129.3.5

Probab=99.10  E-value=5.7e-09  Score=79.92  Aligned_cols=136  Identities=18%  Similarity=0.093  Sum_probs=91.0

Q ss_pred             eEEEEEeeeecCCHHHHHHHHhcCCCCCccCcc--ceEEEEecCCCCCeEEEEEee---CCCCcceEEEEEEEEeCCCcE
Q 028067           38 QCSSSLVKHIKAPVHLVWSLVRRFDQPQKYKPF--VSRCIVQGDLQIGSVREVNVK---SGLPATTSTERLELLDDEEHI  112 (214)
Q Consensus        38 ~ve~sI~~~I~APae~VW~vi~Df~~l~~W~P~--V~s~~veG~g~VGsvR~l~~~---~G~p~~~v~ErL~~~D~~~~~  112 (214)
                      ++..++  +|+||+++||+++.|...+..|.+.  +.....+++..+|....+.+.   +|. .....-+++++++ .++
T Consensus         4 ~~~~~~--~i~ap~e~Vw~altd~~~~~~W~~~~~~~~~~~~~~~~~Gg~~~~~~~~~~~g~-~~~~~~~v~~~~p-~~~   79 (147)
T 1z94_A            4 TIRLHR--VLSAPPERVYRAFLDPLALAKWLPPEGFVCKVLEHDARVGGAYKMEFLAFASGQ-KHAFGGRYLELVP-GER   79 (147)
T ss_dssp             CEEEEE--EESSCHHHHHHHTTCHHHHHHHSSCTTEEEEEEEECCSTTCEEEEEEEETTTCC-EEEEEEEEEEEET-TTE
T ss_pred             EEEEEE--EeCCCHHHHHHHhCCHHHHhhccCCCCEeeeEEEEccCCCcEEEEEEEECCCCC-EEEEEEEEEEEcC-CCE
Confidence            455566  8999999999999999999999863  222223455567777666543   332 1346778999998 588


Q ss_pred             EEEEEEcCcccceeeeccccccccCCCcceeeEEEEEEEeecCCCcceEEEEEEEEeeCCCCCCHHHHHHHHHHHHHHHH
Q 028067          113 FGMRIVGGDHRLKIIWNFSNFISTSSSKLQNYSSIVTVHPEVIDGRPGTLVIESFVVDVPDGNTKDETCYFVEALIKCNL  192 (214)
Q Consensus       113 ~~Y~iv~g~~~~~~~~~~~~~~~~~~~p~~~y~ati~v~p~~~~gs~~t~~~~s~~~~~p~~~~~~~~~~~v~~~~~~gL  192 (214)
                      +.|+...++...               + .....+++++|.+ ++|.+++....    .+....    ...+..-+...|
T Consensus        80 l~~~~~~~~~~~---------------~-~~~~~~~~l~~~~-~gT~l~~~~~~----~~~~~~----~~~~~~gw~~~L  134 (147)
T 1z94_A           80 IRYTDRFDDAGL---------------P-GDMITTITLAPLS-CGADLSIVQEG----IPDAIP----PENCYLGWQQSL  134 (147)
T ss_dssp             EEEEEEESCCC-------------------CEEEEEEEEEET-TEEEEEEEEEC----CCTTSC----HHHHHHHHHHHH
T ss_pred             EEEEEEEeCCCC---------------C-CcEEEEEEEEecC-CCEEEEEEEEc----CCchhh----HHHHHHHHHHHH
Confidence            899886542111               1 2567889999986 57766655532    233322    234466778889


Q ss_pred             HHHHHHHhhh
Q 028067          193 KSLADVSEHL  202 (214)
Q Consensus       193 ~~L~~~le~~  202 (214)
                      ++|++++|+.
T Consensus       135 ~~L~~~le~~  144 (147)
T 1z94_A          135 KQLAALVEPD  144 (147)
T ss_dssp             HHHHHHHSCC
T ss_pred             HHHHHHHHhh
Confidence            9999999863

>3p9v_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.78A {Marinobacter aquaeolei}

Probab=99.09  E-value=5.5e-09  Score=83.49  Aligned_cols=139  Identities=14%  Similarity=0.051  Sum_probs=85.5

Q ss_pred             ceEEEEEeeeecCCHHHHHHHHhcCCCCCccCccceEEEEecCCCCCeEEEE--EeeCCC-Cc-ceEEEEEEEEeCCCcE
Q 028067           37 HQCSSSLVKHIKAPVHLVWSLVRRFDQPQKYKPFVSRCIVQGDLQIGSVREV--NVKSGL-PA-TTSTERLELLDDEEHI  112 (214)
Q Consensus        37 ~~ve~sI~~~I~APae~VW~vi~Df~~l~~W~P~V~s~~veG~g~VGsvR~l--~~~~G~-p~-~~v~ErL~~~D~~~~~  112 (214)
                      .++++++  +|+|||++||+++.|+.+++.|.|.+...+-.++   |..|..  .+.-|. .. ...+.+. .+|+++++
T Consensus         7 i~v~~s~--~I~ap~e~v~~lv~Dve~w~~~yp~~~p~~~~~~---~~~~~~~a~l~vg~~~~~~~~~s~~-~~~~~~~~   80 (161)
T 3p9v_A            7 IELNRDL--EIPASYDEVFDLLADVPKSASHFPKVDKLVDLGN---NAYRWEMEKVGVDKHAIQSVYACTY-HADKEAGK   80 (161)
T ss_dssp             EEEEEEE--EESSCHHHHHHHHTCHHHHHTTSTTEEEEEEEET---TEEEEEECCBSSGGGCBCCEEEEEE-EEETTTTE
T ss_pred             EEEEEEE--EEcCCHHHHHHHHhChhhhHhhCCCeEEEEEcCC---CceEEEEEEEeeeeEEEEEEEEEEE-EEcCCCCE
Confidence            4577778  9999999999999999995555554443332233   222221  222221 11 1334444 36776789


Q ss_pred             EEEEEEcCcccceeeeccccccccCCCcc-eeeEEEEEEEeecCCCcceEEEEEEEEeeCCCCCCHHHHHHHHHHHHHHH
Q 028067          113 FGMRIVGGDHRLKIIWNFSNFISTSSSKL-QNYSSIVTVHPEVIDGRPGTLVIESFVVDVPDGNTKDETCYFVEALIKCN  191 (214)
Q Consensus       113 ~~Y~iv~g~~~~~~~~~~~~~~~~~~~p~-~~y~ati~v~p~~~~gs~~t~~~~s~~~~~p~~~~~~~~~~~v~~~~~~g  191 (214)
                      +.|+.++|                   |+ +...++.+++|.+++.|.++|.+.+....+-.+..    ..++..++...
T Consensus        81 I~~~~~~g-------------------~~~~~l~g~w~f~p~~~g~t~V~~~~~~e~~~pl~~ll----~~~~~~~~~~~  137 (161)
T 3p9v_A           81 ITWSPIKG-------------------EGNGVVSGSWTLSAKGDNATAVKFQTSAELTVPLPSLL----KLAISPVIKHE  137 (161)
T ss_dssp             EEEEECTT-------------------STTEEEEEEEEEEESSSSCEEEEEEEEEEEEECSCGGG----HHHHHHHHHHH
T ss_pred             EEEEEecC-------------------ccceeEEEEEEEEECCCCeEEEEEEEEEEEcCcchHHH----HHHHHHHHHHH
Confidence            99999876                   33 67788999999986668889888776532223332    33445555555


Q ss_pred             HHHHHHHHhhhhh
Q 028067          192 LKSLADVSEHLAV  204 (214)
Q Consensus       192 L~~L~~~le~~a~  204 (214)
                      .+.+-+.+++-|.
T Consensus       138 ~~~~v~af~~ra~  150 (161)
T 3p9v_A          138 FNSLVDTYMANLK  150 (161)
T ss_dssp             HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHH
Confidence            5555555555443

>1xuv_A Hypothetical protein MM0500; alpha-beta protein, northeast structural genomics consortium, NESG, structural genomics; 2.10A {Methanosarcina mazei GO1} SCOP: d.129.3.5

Probab=99.04  E-value=8e-09  Score=83.33  Aligned_cols=143  Identities=10%  Similarity=-0.067  Sum_probs=92.4

Q ss_pred             CCCceEEEEEeeeecCCHHHHHHHHhcCCCCCccCcc-ceEE-EEecCCCCCeEEEEEee--CCCCcceEEEEEEEEeCC
Q 028067           34 VHDHQCSSSLVKHIKAPVHLVWSLVRRFDQPQKYKPF-VSRC-IVQGDLQIGSVREVNVK--SGLPATTSTERLELLDDE  109 (214)
Q Consensus        34 ~~~~~ve~sI~~~I~APae~VW~vi~Df~~l~~W~P~-V~s~-~veG~g~VGsvR~l~~~--~G~p~~~v~ErL~~~D~~  109 (214)
                      +....+..++  .|+||+++||+++.|...+..|.+. --.+ ..+++..+|..-.+.+.  +|.. ....-++++++| 
T Consensus        19 ~~~~~i~~~r--~i~Ap~e~Vw~altdpe~~~~W~~~~~~~~~~~~~d~~~Gg~~~~~~~~~~G~~-~~~~~~v~e~~p-   94 (178)
T 1xuv_A           19 PGKQEIIITR--EFDAPRELVFKAFTDPDLYTQWIGPRGFTTALKIFEPKNGGSWQYIQKDPEGNE-YAFHGVNHDVTE-   94 (178)
T ss_dssp             TTCSEEEEEE--EESSCHHHHHHHHHCHHHHTTTCSSTTCEEEEEEECCSTTCEEEEEEECTTSCE-EEEEEEEEEEET-
T ss_pred             CCCcEEEEEE--EECCCHHHHHHHhCCHHHHHhCCCCCCccceEEEEecccCCEEEEEEECCCCCE-EEEEEEEEEEeC-
Confidence            3456777777  9999999999999999999999642 1122 23455556766555443  4431 246778999999 


Q ss_pred             CcEEEEEEEcCcccceeeeccccccccCCCcceeeEEEEEEEeecCCCcceEEEEEEEEeeCCCCCCHHHHHHH----HH
Q 028067          110 EHIFGMRIVGGDHRLKIIWNFSNFISTSSSKLQNYSSIVTVHPEVIDGRPGTLVIESFVVDVPDGNTKDETCYF----VE  185 (214)
Q Consensus       110 ~~~~~Y~iv~g~~~~~~~~~~~~~~~~~~~p~~~y~ati~v~p~~~~gs~~t~~~~s~~~~~p~~~~~~~~~~~----v~  185 (214)
                      .+++.|+...++.+               .+-.....++.|.|.++++|.++++..   +  +.   .+.....    +.
T Consensus        95 ~~rl~~~~~~~~~~---------------~~~~~~~v~~~l~~~~~ggT~lt~~~~---~--~~---~~~~~~~~~~~~~  151 (178)
T 1xuv_A           95 PERIISTFEFEGLP---------------EKGHVILDTARFEALPGDRTKLTSHSV---F--QT---IEDRDGMLQSGME  151 (178)
T ss_dssp             TTEEEEEEEETTSS---------------SSCCCEEEEEEEEEETTTEEEEEEEEE---C--SS---HHHHHHHHHTTHH
T ss_pred             CCEEEEEEEecCCC---------------CCCCcEEEEEEEEEcCCCCEEEEEEEE---e--CC---HHHHHHHHHHhHH
Confidence            57788887543211               011357788999998755675555543   2  11   1112222    34


Q ss_pred             HHHHHHHHHHHHHHhhhh
Q 028067          186 ALIKCNLKSLADVSEHLA  203 (214)
Q Consensus       186 ~~~~~gL~~L~~~le~~a  203 (214)
                      .-+...|+.|++.+|...
T Consensus       152 ~Gw~~~L~~Lk~~le~~~  169 (178)
T 1xuv_A          152 EGINDSYERLDELLEKMK  169 (178)
T ss_dssp             HHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHhcc
Confidence            567788999999998754

>2il5_A Hypothetical protein; structural genomics, APC23650, PSI-2, structure initiative; 2.30A {Staphylococcus aureus subsp} SCOP: d.129.3.5

Probab=99.04  E-value=1.1e-08  Score=81.28  Aligned_cols=144  Identities=13%  Similarity=0.006  Sum_probs=91.5

Q ss_pred             ceEEEEEeeeecCCHHHHHHHHhcCCCCCccCcc--ceEEEEecCCCCCeEEEEEee--CCCCcceEEEEEEEEeCCCcE
Q 028067           37 HQCSSSLVKHIKAPVHLVWSLVRRFDQPQKYKPF--VSRCIVQGDLQIGSVREVNVK--SGLPATTSTERLELLDDEEHI  112 (214)
Q Consensus        37 ~~ve~sI~~~I~APae~VW~vi~Df~~l~~W~P~--V~s~~veG~g~VGsvR~l~~~--~G~p~~~v~ErL~~~D~~~~~  112 (214)
                      ..++.++  +|+||+++||+++.|...+..|.+.  ......+++..+|..-.+.+.  +|.. ....-++.+++| .++
T Consensus        14 ~~i~~~~--~i~ap~e~Vw~altdp~~~~~W~~p~~~~~~~~~~d~~~Gg~~~~~~~~~~G~~-~~~~~~v~e~~p-~~r   89 (171)
T 2il5_A           14 VEVEIEK--LYKFSPELVYEAWTKKDLLKQWFMTSARTNKEIEADVKEGGKYRIVDQQRNGKV-NVIEGIYESLVM-DEY   89 (171)
T ss_dssp             EEEEEEE--EESSCHHHHHHHTTCHHHHTTTSSSCTTTEEEEEECCSTTCEEEEEEECGGGCE-EEEEEEEEEEET-TTE
T ss_pred             ceEEEEE--EeCCCHHHHHHHHCCHHHHHhccCCCCccceEEEecccCCCEEEEEEECCCCCE-EEEEEEEEEEcC-CCE
Confidence            4566666  9999999999999999999999742  222223455556766555443  4431 246778999998 588


Q ss_pred             EEEEEEcCcccceeeeccccccccCCCcceeeEEEEEEEeecCCCcceEEEEEEEEeeCCCCCCH-------HHHHHHHH
Q 028067          113 FGMRIVGGDHRLKIIWNFSNFISTSSSKLQNYSSIVTVHPEVIDGRPGTLVIESFVVDVPDGNTK-------DETCYFVE  185 (214)
Q Consensus       113 ~~Y~iv~g~~~~~~~~~~~~~~~~~~~p~~~y~ati~v~p~~~~gs~~t~~~~s~~~~~p~~~~~-------~~~~~~v~  185 (214)
                      +.|+...++.                 |-.....++.++|.++++|.++++...+. ....+...       ......+.
T Consensus        90 l~~~~~~~~~-----------------~~~~~~~~~~l~~~~~g~T~l~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~  151 (171)
T 2il5_A           90 VKMTIGMPGL-----------------SETQDVIEVEFFERETGGTQMLFYYRSLV-EKERRFTNLEYKQKKKEYHDAMV  151 (171)
T ss_dssp             EEEEESCC-------------------CCCCEEEEEEEEECSSSSEEEEEEEEEEE-CCCTTCCHHHHHHHHHHHHHHHH
T ss_pred             EEEEEEecCC-----------------CCCcEEEEEEEEECCCCCEEEEEEEEecc-CcccccccchhccchhHHHHHHH
Confidence            8998754321                 21357888999998744776666554332 10001111       22334456


Q ss_pred             HHHHHHHHHHHHHHhhh
Q 028067          186 ALIKCNLKSLADVSEHL  202 (214)
Q Consensus       186 ~~~~~gL~~L~~~le~~  202 (214)
                      .-+...|+.|++++|+.
T Consensus       152 ~Gw~~~L~~L~~~le~~  168 (171)
T 2il5_A          152 HGFELMFDKMYHVIETS  168 (171)
T ss_dssp             HHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHHHhhc
Confidence            66778899999999864

>2lak_A AHSA1-like protein RHE_CH02687; NESG, structural genomics, northeast structural genomics CON PSI-biology, structure genomics, unknown function; NMR {Rhizobium etli}

Probab=99.03  E-value=2e-09  Score=85.11  Aligned_cols=137  Identities=15%  Similarity=0.108  Sum_probs=92.6

Q ss_pred             CCCceEEEEEeeeecCCHHHHHHHHhcCCCCCccCccceEEEEecCCCCCeEEEEEeeCCCCcceEEEEEEEEeCCCcEE
Q 028067           34 VHDHQCSSSLVKHIKAPVHLVWSLVRRFDQPQKYKPFVSRCIVQGDLQIGSVREVNVKSGLPATTSTERLELLDDEEHIF  113 (214)
Q Consensus        34 ~~~~~ve~sI~~~I~APae~VW~vi~Df~~l~~W~P~V~s~~veG~g~VGsvR~l~~~~G~p~~~v~ErL~~~D~~~~~~  113 (214)
                      +...+++.++  +|+||+++||++++|+..++.|.+.+.+.    +..+|....+.+. |..  ....++++++| .+++
T Consensus         6 ~~~~~i~~~~--~i~Ap~e~Vw~altdp~~~~~W~~~~~~~----~~~~Gg~~~~~~~-g~~--~~~~~v~e~~p-~~~l   75 (160)
T 2lak_A            6 PESFVVRREA--HLAAPPAAVFALMTDPEKILRWMGTEAEV----EPEPGGLYLVNVT-GAR--FARGSFREVVP-VHRL   75 (160)
T ss_dssp             CSCCEEEEEE--EESSCHHHHHHHHHCHHHHHHTSCSSEEE----SCSTTCCEEECSS-TTC--CSSCCEEEEET-TTEE
T ss_pred             CCCceEEEEE--EeCCCHHHHHHHhcChHHHhhhCCCccee----eccCCCEEEEEEe-CCc--eEEEEEEEEcC-CCEE
Confidence            3467888888  99999999999999999999998764332    3335555555554 321  45667889998 5778


Q ss_pred             EEEEEcCcccceeeeccccccccCCCcceeeEEEEEEEeecCCCcceEEEEEEEEeeCCCCCCHHHHHHHHHHHHHHHHH
Q 028067          114 GMRIVGGDHRLKIIWNFSNFISTSSSKLQNYSSIVTVHPEVIDGRPGTLVIESFVVDVPDGNTKDETCYFVEALIKCNLK  193 (214)
Q Consensus       114 ~Y~iv~g~~~~~~~~~~~~~~~~~~~p~~~y~ati~v~p~~~~gs~~t~~~~s~~~~~p~~~~~~~~~~~v~~~~~~gL~  193 (214)
                      .|+...++..              ..|-.....+++|.|.+ +||.++++...    .+.   . .....+..-+...|+
T Consensus        76 ~~~~~~~~~~--------------~~~~~~~~~~~~l~~~~-~gT~l~~~~~~----~~~---~-~~~~~~~~gw~~~L~  132 (160)
T 2lak_A           76 AYSFGWDGSE--------------VVPPGSSLVEIDLIEQG-GGTLLRLTHSG----LPS---A-EQCAGHEEGWAHYLG  132 (160)
T ss_dssp             EECCCCCSSS--------------CCCTTSCEEEEEEEECS-SSEEEEEEEEC----CCS---H-HHHHHHHHHHHHHHH
T ss_pred             EEEEEecCCC--------------CCCCCcEEEEEEEEECC-CCEEEEEEEeC----CCC---H-HHHHHHHHHHHHHHH
Confidence            8876432210              01224678899999986 57755554431    222   1 223445556789999


Q ss_pred             HHHHHHhhhh
Q 028067          194 SLADVSEHLA  203 (214)
Q Consensus       194 ~L~~~le~~a  203 (214)
                      +|++.+|+..
T Consensus       133 ~Lk~~le~~~  142 (160)
T 2lak_A          133 RLTEVAAGRD  142 (160)
T ss_dssp             HHHHHHHCSS
T ss_pred             HHHHHHhcCC
Confidence            9999999854

>3q6a_A Uncharacterized protein; structural genomics, PSI-biology; 1.80A {Staphylococcus saprophyticus subsp}

Probab=98.98  E-value=4.6e-08  Score=75.08  Aligned_cols=125  Identities=10%  Similarity=0.042  Sum_probs=85.0

Q ss_pred             eEEEEEeeeecCCHHHHHHHHhcCCCCCccCccceEEEEecCCCCCeEEEEEeeCCCCcceEEEEEEEEeCCCcEEEEEE
Q 028067           38 QCSSSLVKHIKAPVHLVWSLVRRFDQPQKYKPFVSRCIVQGDLQIGSVREVNVKSGLPATTSTERLELLDDEEHIFGMRI  117 (214)
Q Consensus        38 ~ve~sI~~~I~APae~VW~vi~Df~~l~~W~P~V~s~~veG~g~VGsvR~l~~~~G~p~~~v~ErL~~~D~~~~~~~Y~i  117 (214)
                      +++.++  .|+||+++||++++|+..++.|.+.  .  .+++..+|....+.+.+. + ...+-++.+++| .+++.|+.
T Consensus         2 ~i~~~~--~i~ap~e~Vw~altd~~~~~~W~~~--~--~~~~~~~Gg~~~~~~~~~-~-~~~~~~v~~~~p-~~~l~~~~   72 (135)
T 3q6a_A            2 DIITKM--QVDVPRETVFEAFVDPEKIGGFWFS--S--SSERWEQGKTITLRYEEY-D-AELNINIERVED-NQLIAFTW   72 (135)
T ss_dssp             CEEEEE--EESSCHHHHHHHHHCTTTGGGTSSS--E--ESSCCCTTCEEEEECGGG-T-C-CEEEEEEEET-TTEEEEEE
T ss_pred             eEEEEE--EeCCCHHHHHHHHcCHHHhcccCCC--C--CcccccCCCEEEEEEcCc-C-ceEEEEEEEEcC-CCEEEEEE
Confidence            467777  9999999999999999999999763  2  356656787766665432 1 134557888999 57788876


Q ss_pred             EcCcccceeeeccccccccCCCcceeeEEEEEEEeecCCCcceEEEEEEEEeeCCCCCCHHHHHHHHHHHHHHHHHHHHH
Q 028067          118 VGGDHRLKIIWNFSNFISTSSSKLQNYSSIVTVHPEVIDGRPGTLVIESFVVDVPDGNTKDETCYFVEALIKCNLKSLAD  197 (214)
Q Consensus       118 v~g~~~~~~~~~~~~~~~~~~~p~~~y~ati~v~p~~~~gs~~t~~~~s~~~~~p~~~~~~~~~~~v~~~~~~gL~~L~~  197 (214)
                      .+                       . ..++.+.|.+ ++|.++++..    ..+... .+. ...+..-....|++|++
T Consensus        73 ~~-----------------------g-~~~~~l~~~~-~gT~l~~~~~----~~~~~~-~~~-~~~~~~GW~~~l~~L~~  121 (135)
T 3q6a_A           73 GA-----------------------H-PITIQFEESE-AGTVVTTTEK----DFDTQD-VKQ-LLGQKEGWVYMLSCLKV  121 (135)
T ss_dssp             TT-----------------------E-EEEEEEEEET-TEEEEEEEEC----CCCSSC-HHH-HHHHHHHHHHHHHHHHH
T ss_pred             cC-----------------------C-eEEEEEEECC-CCEEEEEEEc----CCCcch-HHH-HhhchhCHHHHHHHHHH
Confidence            21                       1 6788899975 6765554432    122221 222 24456667788999999


Q ss_pred             HHhhh
Q 028067          198 VSEHL  202 (214)
Q Consensus       198 ~le~~  202 (214)
                      .+|..
T Consensus       122 ~le~g  126 (135)
T 3q6a_A          122 YLEHG  126 (135)
T ss_dssp             HHHHS
T ss_pred             HHhcC
Confidence            99874

>1xn5_A BH1534 unknown conserved protein; structural genomics, protein structure initiative, PSI, BACI halodurans protein BH1534, alpha + beta; NMR {Bacillus halodurans} SCOP: d.129.3.5

Probab=98.98  E-value=9.3e-09  Score=80.28  Aligned_cols=131  Identities=13%  Similarity=0.089  Sum_probs=87.8

Q ss_pred             CceEEEEEeeeecCCHHHHHHHHhcCCCCCccCccceEEEEecCCCCCeEEEEEeeCCCCcceEEEEEEEEeCCCcEEEE
Q 028067           36 DHQCSSSLVKHIKAPVHLVWSLVRRFDQPQKYKPFVSRCIVQGDLQIGSVREVNVKSGLPATTSTERLELLDDEEHIFGM  115 (214)
Q Consensus        36 ~~~ve~sI~~~I~APae~VW~vi~Df~~l~~W~P~V~s~~veG~g~VGsvR~l~~~~G~p~~~v~ErL~~~D~~~~~~~Y  115 (214)
                      ..+++.++  +|+||+++||++++|+..++.|.+.+     +++..+|....+....|    .+.-++++++| .+++.|
T Consensus         4 ~~~i~~~~--~i~Ap~e~Vw~altd~~~~~~W~~~~-----~~~~~~Gg~~~~~~~~g----~~~~~v~e~~p-~~~l~~   71 (146)
T 1xn5_A            4 LPDIKKEV--RFNAPIEKVWEAVSTSEGLAFWFMEN-----DLKAETGHHFHLQSPFG----PSPCQVTDVER-PIKLSF   71 (146)
T ss_dssp             CCCEEEEE--EESSCHHHHHHHTTSHHHHHTTSCCB-----CCCSCTTCEEEEECSSC----EEEEEEEEEET-TTEEEE
T ss_pred             CcEEEEEE--EEcCCHHHHHHHHhChhHHHHhcCCC-----CCCccCCCEEEEEecCC----ceEEEEEEEeC-CcEEEE
Confidence            35677888  99999999999999999999998752     34445777666655333    46788999999 577888


Q ss_pred             EEEcCcccceeeeccccccccCCCcceeeEEEEEEEeecCCCcceEEEEEEEEeeCCC------CCCHHHHHHHHHHHHH
Q 028067          116 RIVGGDHRLKIIWNFSNFISTSSSKLQNYSSIVTVHPEVIDGRPGTLVIESFVVDVPD------GNTKDETCYFVEALIK  189 (214)
Q Consensus       116 ~iv~g~~~~~~~~~~~~~~~~~~~p~~~y~ati~v~p~~~~gs~~t~~~~s~~~~~p~------~~~~~~~~~~v~~~~~  189 (214)
                      +...                      .....+++|.|.+ +||.+++....+  ...+      +...+.....+..-..
T Consensus        72 ~~~~----------------------~~~~~~~~l~~~~-~gT~l~~~~~~~--~~~~~~~~~~g~~~~~~~~~~~~GW~  126 (146)
T 1xn5_A           72 TWDT----------------------DGWSVTFHLKEEE-NGTIFTIVHSGW--KQGDTKVEKAGAESAVVHERMDRGWH  126 (146)
T ss_dssp             EETT----------------------TTEEEEEEEEECS-SSEEEEEEEECC--CSTTCBCSSSSSBHHHHHHHHHHHHH
T ss_pred             EEeC----------------------CCEEEEEEEEEcC-CCEEEEEEEEEe--cCCCcccccccchhHHHHHHHHHhHH
Confidence            7732                      1356788899876 567555443211  1111      1112334455666778


Q ss_pred             HHH-HHHHHHHhhhh
Q 028067          190 CNL-KSLADVSEHLA  203 (214)
Q Consensus       190 ~gL-~~L~~~le~~a  203 (214)
                      ..| +.|++.++...
T Consensus       127 ~~l~~~L~~~l~~~~  141 (146)
T 1xn5_A          127 DLVNERLRQIVELEH  141 (146)
T ss_dssp             HHTTTTTHHHHC---
T ss_pred             HHHHHHHHHHHHhhh
Confidence            888 99999887653

>2ldk_A Uncharacterized protein; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Arthrobacter aurescens}

Probab=98.93  E-value=3.3e-08  Score=78.85  Aligned_cols=149  Identities=11%  Similarity=0.086  Sum_probs=91.5

Q ss_pred             CCCceEEEEEeeeecCCHHHHHHHHhcCCCCCccCc-c-ceEEEEecCCCCCeEEEEEee--CCCCcceEEEEEEEEeCC
Q 028067           34 VHDHQCSSSLVKHIKAPVHLVWSLVRRFDQPQKYKP-F-VSRCIVQGDLQIGSVREVNVK--SGLPATTSTERLELLDDE  109 (214)
Q Consensus        34 ~~~~~ve~sI~~~I~APae~VW~vi~Df~~l~~W~P-~-V~s~~veG~g~VGsvR~l~~~--~G~p~~~v~ErL~~~D~~  109 (214)
                      +....++.++  .|+||+++||+++.|...+..|.+ . +.....+++..+|..-.+.+.  +|.. ....-++.+++| 
T Consensus         9 ~~~~~i~~~~--~i~Ap~e~Vw~altdp~~~~~W~~p~~~~~~~~~~d~~~Gg~~~~~~~~~~g~~-~~~~~~v~e~~p-   84 (172)
T 2ldk_A            9 VEALSFSIVA--EFDADVKRVWAIWEDPRQLERWWGPPTWPATFETHEFTVGGKAAYYMTGPDGTK-ARGWWQFTTIEA-   84 (172)
T ss_dssp             TTTTEEEEEE--EESSCHHHHHHHHHCHHHHHTTSSCTTSCEEEEEECCSTTCEEEEEEECTTSCE-EEEEEEEEEECS-
T ss_pred             CCCceEEEEE--EeCCCHHHHHHHhCCHHHHHhccCCCCcccceEEEeecCCCEEEEEEECCCCCE-EeeEEEEEEEcC-
Confidence            3456777788  999999999999999999988864 2 222223455557766555443  4431 246778999998 


Q ss_pred             CcEEEEEEEcCcccceeeeccccccccCCC-cceeeEEEEEEEeecCCCcceEEEEEEEEeeCCCCCCHHHHHHHHHHHH
Q 028067          110 EHIFGMRIVGGDHRLKIIWNFSNFISTSSS-KLQNYSSIVTVHPEVIDGRPGTLVIESFVVDVPDGNTKDETCYFVEALI  188 (214)
Q Consensus       110 ~~~~~Y~iv~g~~~~~~~~~~~~~~~~~~~-p~~~y~ati~v~p~~~~gs~~t~~~~s~~~~~p~~~~~~~~~~~v~~~~  188 (214)
                      .+++.|+....+...            .|. .+.....++.++|.+ +||.++++..   + .+.......+...+..-+
T Consensus        85 ~~rl~~~~~~~~~~g------------~p~~~~~~~~v~~~l~~~~-~gT~lt~~~~---~-~~~~~~~~~~~~~~~~Gw  147 (172)
T 2ldk_A           85 PDHLEFDDGFADEHG------------APVDELGVTHATVKLEPLE-NRTRMTIIST---F-ESEEQMQKMAEMGMEEGM  147 (172)
T ss_dssp             SSEEEEEEEEBCSSC------------CBCTTTCEEEEEEEEEEET-TEEEEEEEEE---E-SCHHHHHHHHHHTHHHHH
T ss_pred             CCEEEEEEeecCCCC------------CccCCCccEEEEEEEEEcC-CCEEEEEEEE---c-CCHHHHHHHHHhhHHHHH
Confidence            577888875321100            000 113577889999986 6776665543   2 121110111112235667


Q ss_pred             HHHHHHHHHHHhhhh
Q 028067          189 KCNLKSLADVSEHLA  203 (214)
Q Consensus       189 ~~gL~~L~~~le~~a  203 (214)
                      ...|++|++.+|+..
T Consensus       148 ~~~L~~L~~~le~~~  162 (172)
T 2ldk_A          148 REAIEQIDAVLSEPA  162 (172)
T ss_dssp             HHHHHHHHHHHTCCS
T ss_pred             HHHHHHHHHHHHHhH
Confidence            788999999998744

>3pu2_A Uncharacterized protein; SRPBCC superfamily, PSI-biology, NESG, RHR263, structural GE protein structure initiative; HET: MSE; 2.61A {Rhodobacter sphaeroides}

Probab=98.89  E-value=1.8e-07  Score=74.74  Aligned_cols=144  Identities=10%  Similarity=0.039  Sum_probs=91.8

Q ss_pred             CCCceEEEEEeeeecCCHHHHHHHHhcCCCCCccCcc--ceEEEEecCCCCCeEEEEEee--CCCCcceEEEEEEEEeCC
Q 028067           34 VHDHQCSSSLVKHIKAPVHLVWSLVRRFDQPQKYKPF--VSRCIVQGDLQIGSVREVNVK--SGLPATTSTERLELLDDE  109 (214)
Q Consensus        34 ~~~~~ve~sI~~~I~APae~VW~vi~Df~~l~~W~P~--V~s~~veG~g~VGsvR~l~~~--~G~p~~~v~ErL~~~D~~  109 (214)
                      +....++.++  .|+||+++||++++|...+..|.+.  ......+++..+|..-.+.+.  +|.. ..+.-++++++| 
T Consensus        10 ~~~~~i~~~~--~i~Ap~e~Vw~altdp~~~~~W~~~~~~~~~~~~~d~~~Gg~~~~~~~~~~G~~-~~~~g~v~e~~p-   85 (164)
T 3pu2_A           10 GSATRLEFRR--HFAATPEQLWAALTSPALLPAWLFARGWPMTECVFEPHKGGLIRQVWTGPEGRT-RGLTGRVILAEP-   85 (164)
T ss_dssp             CBTTEEEEEE--EESSCHHHHHHHHHCTTTGGGTSCBTTBCEEEEEECCSTTCEEEEEEECGGGCE-EEEEEEEEEEET-
T ss_pred             CCCceEEEEE--EECCCHHHHHHHhcCHHHHhhEeCCCCeeeEEEEEeccCCCEEEEEEECCCCCE-EEEEEEEEEEcC-
Confidence            5667788888  9999999999999999999999862  211223455556766554442  4532 246788999999 


Q ss_pred             CcEEEEEEEcCcccceeeeccccccccCCCcceeeEEEEEEEeecCCCcceEEEEEEEEeeCCCCCCHHHH-HHHHHHHH
Q 028067          110 EHIFGMRIVGGDHRLKIIWNFSNFISTSSSKLQNYSSIVTVHPEVIDGRPGTLVIESFVVDVPDGNTKDET-CYFVEALI  188 (214)
Q Consensus       110 ~~~~~Y~iv~g~~~~~~~~~~~~~~~~~~~p~~~y~ati~v~p~~~~gs~~t~~~~s~~~~~p~~~~~~~~-~~~v~~~~  188 (214)
                      .+++.|+..-.+. .              .| .....++.|+|.+ +||.++++..   +  +.....+.+ ...+..=.
T Consensus        86 ~~rl~~t~~~~~~-~--------------~~-~~s~vt~~l~~~~-~gT~l~l~~~---~--~~~~~~~~~~~~~~~~GW  143 (164)
T 3pu2_A           86 PHRLIHSELYDED-W--------------TG-GETLVTLQLLPVE-GGTELAMAVD---Y--ATPEARDAVAASAMATEM  143 (164)
T ss_dssp             TTEEEEEEBCC------------------CC-SCEEEEEEEEEET-TEEEEEEEEE---C--SSTTHHHHHHTSTHHHHH
T ss_pred             CCEEEEEEeccCC-C--------------CC-CCEEEEEEEEEcC-CCEEEEEEEE---e--CCHHHHHHHHHhhHHHHH
Confidence            5778888742110 0              11 2467888999987 5676665543   2  221111111 12345667


Q ss_pred             HHHHHHHHHHHhhhh
Q 028067          189 KCNLKSLADVSEHLA  203 (214)
Q Consensus       189 ~~gL~~L~~~le~~a  203 (214)
                      ...|+.|++.|+.+.
T Consensus       144 ~~~L~~L~~~l~~~~  158 (164)
T 3pu2_A          144 EEAYRHLDVMLAALE  158 (164)
T ss_dssp             HHHHHHHHHHHHHC-
T ss_pred             HHHHHHHHHHHHHhh
Confidence            788889998888764

>3q63_A MLL2253 protein; structural genomics, PSI-biology, protein structure initiati alpha-beta protein, unknown, structure genomics; 2.00A {Mesorhizobium loti}

Probab=98.89  E-value=7.3e-08  Score=75.89  Aligned_cols=137  Identities=7%  Similarity=0.004  Sum_probs=88.0

Q ss_pred             CCceEEEEEeeeecCCHHHHHHHHhcCCCCCccCccceEEEEecCCCCCeEEEEEeeCCCCcceEEEEEEEEeCCCcEEE
Q 028067           35 HDHQCSSSLVKHIKAPVHLVWSLVRRFDQPQKYKPFVSRCIVQGDLQIGSVREVNVKSGLPATTSTERLELLDDEEHIFG  114 (214)
Q Consensus        35 ~~~~ve~sI~~~I~APae~VW~vi~Df~~l~~W~P~V~s~~veG~g~VGsvR~l~~~~G~p~~~v~ErL~~~D~~~~~~~  114 (214)
                      ....+..++  .|+||+++||+++.|...+..|.+.   +  +++..+|....+....|.   .+.-++++++| .+++.
T Consensus         7 ~~~~i~~~~--~i~Ap~e~Vw~altdp~~~~~W~~~---~--~~~~~~Gg~~~~~~~~g~---~~~g~v~e~~p-~~~l~   75 (151)
T 3q63_A            7 ENRTVVVER--QISHPPEKLWRALTQPHLIEEWLMK---N--DFKPAVGHRFNISADWGG---VLDCEVLAVEP-NKTLS   75 (151)
T ss_dssp             --CEEEEEE--EESSCHHHHHHHHHCHHHHHHHSCE---E--CCCSSTTCEEEEECTTSC---EEEEEEEEEET-TTEEE
T ss_pred             CCCeEEEEE--EeCCCHHHHHHHHcCHHHHHhhcCc---C--CCccCCCCEEEEECCCCC---EEEEEEEEEeC-CCEEE
Confidence            345677777  9999999999999999999999983   2  345557766555533332   57788999999 57788


Q ss_pred             EEEEcCcccceeeeccccccccCCCcceeeEEEEEEEeecCCCcceEEEEEEEEeeCCCCCCHHHHHHHHHHHHHHHHHH
Q 028067          115 MRIVGGDHRLKIIWNFSNFISTSSSKLQNYSSIVTVHPEVIDGRPGTLVIESFVVDVPDGNTKDETCYFVEALIKCNLKS  194 (214)
Q Consensus       115 Y~iv~g~~~~~~~~~~~~~~~~~~~p~~~y~ati~v~p~~~~gs~~t~~~~s~~~~~p~~~~~~~~~~~v~~~~~~gL~~  194 (214)
                      |+....+.              .+.+-..-..++.|.|.+ +||.++++..    ..+... .+ +...+..-....|+.
T Consensus        76 ~~~~~~~~--------------~~~~~~~s~v~~~l~~~~-~gT~l~l~~~----g~~~~~-~~-~~~~~~~GW~~~L~~  134 (151)
T 3q63_A           76 YTWNLAHQ--------------DPAFDLRSVVTFTLTPTP-TGTHLRMEQS----GFRPDQ-RR-AYGGAKMGWPQFFEK  134 (151)
T ss_dssp             EECBBCCS--------------STTTCBCCEEEEEEEECS-SSEEEEEEEE----CCCTTC-HH-HHHHHHHHHHHHHHH
T ss_pred             EEEecCCC--------------CCCCCCCeEEEEEEEEcC-CCEEEEEEEe----CCCcch-HH-HHHhhhhCHHHHHHH
Confidence            87754321              011123456788899987 5776555542    123221 22 223445566778999


Q ss_pred             HHHHHhhhh
Q 028067          195 LADVSEHLA  203 (214)
Q Consensus       195 L~~~le~~a  203 (214)
                      |++.||..-
T Consensus       135 L~~~le~~~  143 (151)
T 3q63_A          135 LEQLLDRTD  143 (151)
T ss_dssp             HHHHHC---
T ss_pred             HHHHHhccC
Confidence            999998754

>2lcg_A Uncharacterized protein; start domain, structural genomics, northeast structural GENO consortium, NESG, unknown function, AHSA1; NMR {Ralstonia metallidurans}

Probab=98.88  E-value=9.1e-08  Score=74.01  Aligned_cols=126  Identities=11%  Similarity=0.071  Sum_probs=84.2

Q ss_pred             EEEEEeeeecCCHHHHHHHHhcCCCCCcc-Cc--cceEEEEecCCCCCeEEEEEee--CCCCcceEEEEEEEEeCCCcEE
Q 028067           39 CSSSLVKHIKAPVHLVWSLVRRFDQPQKY-KP--FVSRCIVQGDLQIGSVREVNVK--SGLPATTSTERLELLDDEEHIF  113 (214)
Q Consensus        39 ve~sI~~~I~APae~VW~vi~Df~~l~~W-~P--~V~s~~veG~g~VGsvR~l~~~--~G~p~~~v~ErL~~~D~~~~~~  113 (214)
                      +..++  .|+||+++||++++|+..+..| .+  .+.....+++..+|....+.+.  +|.......-++++++| .+++
T Consensus         3 i~~~~--~i~ap~e~Vw~altd~~~~~~W~~~~~~~~~~~~~~d~~~Gg~~~~~~~~~~g~~~~~~~~~v~~~~p-~~~l   79 (142)
T 2lcg_A            3 ITVET--TVAAPVGKVWRAYTTPEDIKQWNAASDDWHTTAATVDLREGGAFSSRMEAKDGSMGFDFAGTYTKVVE-NKRI   79 (142)
T ss_dssp             EEEEE--EESSCHHHHHHHTTCHHHHHHHCCSSTTEEEEEEEECCSTTCEEEEEEEETTSSCEEEEEEEEEEEET-TTEE
T ss_pred             EEEEE--EeCCCHHHHHHHhCCHHHHhcCCCCCCCccceeeEEccccCCEEEEEEEcCCCCceeeeEEEEEEEcC-CCEE
Confidence            45566  9999999999999999999999 54  2322223455567777655543  34211246778999999 5788


Q ss_pred             EEEEEcCcccceeeeccccccccCCCcceeeEEEEEEEeecCCCcceEEEEEEEEeeCCCCCCHHHHHHHHHHHHHHHHH
Q 028067          114 GMRIVGGDHRLKIIWNFSNFISTSSSKLQNYSSIVTVHPEVIDGRPGTLVIESFVVDVPDGNTKDETCYFVEALIKCNLK  193 (214)
Q Consensus       114 ~Y~iv~g~~~~~~~~~~~~~~~~~~~p~~~y~ati~v~p~~~~gs~~t~~~~s~~~~~p~~~~~~~~~~~v~~~~~~gL~  193 (214)
                      .|+. .                      . ...++.+.|.+ ++|.+++...     .+.....    ..+..-....|+
T Consensus        80 ~~~~-~----------------------g-~~~~~~l~~~~-~gT~l~~~~~-----~~~~~~~----~~~~~Gw~~~L~  125 (142)
T 2lcg_A           80 EYAF-G----------------------D-RTAKVEFLEAP-QGVTVRVSFV-----AETEYPV----EQQQQGWQAILN  125 (142)
T ss_dssp             EEEE-T----------------------T-EEEEEEEEEET-TEEEEEEEEE-----CCSSSCH----HHHHHHHHHHHH
T ss_pred             EEEc-C----------------------C-CEEEEEEEEcC-CCEEEEEEEe-----cCCHHHH----HHHHHHHHHHHH
Confidence            9875 1                      1 56788899987 5765555432     2222222    334666777899


Q ss_pred             HHHHHHhh
Q 028067          194 SLADVSEH  201 (214)
Q Consensus       194 ~L~~~le~  201 (214)
                      .|++.++.
T Consensus       126 ~L~~~le~  133 (142)
T 2lcg_A          126 NFKRHVES  133 (142)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHH
Confidence            99999886

>1xfs_A NC_840354, conserved hypothetical protein; structural genomics, protein structure initiative, NESG, ALP protein, PSI; 1.70A {Nitrosomonas europaea} SCOP: d.129.3.5

Probab=98.83  E-value=2.1e-07  Score=74.73  Aligned_cols=149  Identities=13%  Similarity=0.063  Sum_probs=89.9

Q ss_pred             CCCceEEEEEeeeecCCHHHHHHHHhcCCCCCccCc--cceEEEEecCCCCCeEEEEEee--CCCCcceEEEEEEEEeCC
Q 028067           34 VHDHQCSSSLVKHIKAPVHLVWSLVRRFDQPQKYKP--FVSRCIVQGDLQIGSVREVNVK--SGLPATTSTERLELLDDE  109 (214)
Q Consensus        34 ~~~~~ve~sI~~~I~APae~VW~vi~Df~~l~~W~P--~V~s~~veG~g~VGsvR~l~~~--~G~p~~~v~ErL~~~D~~  109 (214)
                      .....+..++  +|+||+++||+++.|...+..|.+  .+.....+++..+|..-.+.+.  +|.. ....-++++++| 
T Consensus         7 ~~~~~i~~~r--~i~Ap~e~Vw~altdp~~~~~W~~p~~~~~~~~~~d~~~Gg~~~~~~~~~~G~~-~~~~~~v~e~~p-   82 (178)
T 1xfs_A            7 DAELDLMLKR--ELAVPVNLVWRGLTEPELLKKWFVPKPWSISDCRVDLRPGGEFYTVMQDPEGNK-FPNSGCFLEVTD-   82 (178)
T ss_dssp             CTTTEEEEEE--EESSCHHHHHHHHHCHHHHTTTSSCTTCEEEEEEECCSTTCEEEEEEECTTCCE-EEEEEEEEEEET-
T ss_pred             CCCceEEEEE--EecCCHHHHHHHhCCHHHHhhCCCCCCeeeeEEEEeeECCcEEEEEEECCCCCE-EEEEEEEEEEeC-
Confidence            3455677777  999999999999999999999964  2332233455567776665553  4431 246778999998 


Q ss_pred             CcEEEEEEEcCc--ccceeeeccccccccCCCcce--eeEEEEEEEeecCCCcceEEEEEEEEeeCCCCCCHHHHHHH--
Q 028067          110 EHIFGMRIVGGD--HRLKIIWNFSNFISTSSSKLQ--NYSSIVTVHPEVIDGRPGTLVIESFVVDVPDGNTKDETCYF--  183 (214)
Q Consensus       110 ~~~~~Y~iv~g~--~~~~~~~~~~~~~~~~~~p~~--~y~ati~v~p~~~~gs~~t~~~~s~~~~~p~~~~~~~~~~~--  183 (214)
                      .+++.|+..-.+  .+..      . +.+.--|+.  ....++.|+|.+ +||.++++..   +  +.   .+....+  
T Consensus        83 ~~rl~~~~~~~~~~~~~~------~-~~~~~w~~~~~~~~~~~~l~~~~-~gT~l~~~~~---~--~~---~~~~~~~~~  146 (178)
T 1xfs_A           83 EKRLIWTSALVKNYRPAV------P-ATTSDKECAHIVMTAVIELQPTS-SGTRYTACAM---H--NT---PGQRKLHEE  146 (178)
T ss_dssp             TTEEEEESSEEGGGEECC------C------------CCEEEEEEEECS-SSEEEEEEEE---C--SS---HHHHHHHHT
T ss_pred             CCEEEEEEEEcCCCCccc------c-ccccccccccccEEEEEEEEECC-CCEEEEEEEE---c--CC---HHHHHHHHh
Confidence            577888763211  0000      0 000000111  467889999976 5775555543   2  21   1122222  


Q ss_pred             --HHHHHHHHHHHHHHHHhhh
Q 028067          184 --VEALIKCNLKSLADVSEHL  202 (214)
Q Consensus       184 --v~~~~~~gL~~L~~~le~~  202 (214)
                        +..-+...|+.|++.+|+.
T Consensus       147 ~~~~~Gw~~~l~~L~~~le~~  167 (178)
T 1xfs_A          147 MGFHEGWGTTITQLEELLKQE  167 (178)
T ss_dssp             TTHHHHHHHHHHHHHHHHHHH
T ss_pred             hhHHHHHHHHHHHHHHHHHhh
Confidence              2556778899999999875

>2lgh_A Uncharacterized protein; AHSA1, start domain, COG3832, PF08327, HSP90, heat shock, ST genomics, PSI-biology; NMR {Aeromonas hydrophila subsp}

Probab=98.80  E-value=3.2e-07  Score=71.51  Aligned_cols=130  Identities=14%  Similarity=0.060  Sum_probs=83.5

Q ss_pred             EEEEEeeeecCCHHHHHHHHhcCCCCCcc-Ccc--ceEEEEecCCCCCeEEEEEee--CCCCcceEEEEEEEEeCCCcEE
Q 028067           39 CSSSLVKHIKAPVHLVWSLVRRFDQPQKY-KPF--VSRCIVQGDLQIGSVREVNVK--SGLPATTSTERLELLDDEEHIF  113 (214)
Q Consensus        39 ve~sI~~~I~APae~VW~vi~Df~~l~~W-~P~--V~s~~veG~g~VGsvR~l~~~--~G~p~~~v~ErL~~~D~~~~~~  113 (214)
                      +..++  .|+||+++||+++.|...+..| .+.  +.....+++..+|..-.+.+.  +|.....+.-++.+++| .+++
T Consensus         3 i~~~~--~i~Ap~e~Vw~altdp~~~~~W~~~p~~~~~~~~~~d~~~Gg~~~~~~~~~~G~~~~~~~g~v~e~~p-~~~l   79 (144)
T 2lgh_A            3 ISIEA--HIEQEIEAVWWAWNDPDCIARWNAASSDWHTTGSRVDLVVGGRFCHHMAAKDGSAGFDFTGTFTRVEA-PTRL   79 (144)
T ss_dssp             EEEEE--EESSCHHHHHHHHHCHHHHTTSSSCSTTEEEEEEEECCSTTCEEEEEEEETTSSCEEEEEEEEEEEET-TTEE
T ss_pred             EEEEE--EeCCCHHHHHHHhCCHHHHhccCCCCCCcccceEEECCCCCCEEEEEEECCCCCceEEeEEEEEEEeC-CCEE
Confidence            44555  9999999999999999999999 542  221123455456655444433  45201246678999998 5788


Q ss_pred             EEEEEcCcccceeeeccccccccCCCcceeeEEEEEEEeecCCCcceEEEEEEEEeeCCCCCCHHHHHHHHHHHHHHHHH
Q 028067          114 GMRIVGGDHRLKIIWNFSNFISTSSSKLQNYSSIVTVHPEVIDGRPGTLVIESFVVDVPDGNTKDETCYFVEALIKCNLK  193 (214)
Q Consensus       114 ~Y~iv~g~~~~~~~~~~~~~~~~~~~p~~~y~ati~v~p~~~~gs~~t~~~~s~~~~~p~~~~~~~~~~~v~~~~~~gL~  193 (214)
                      .|+.. |                      ....++.+.|.+ +||.++++..     .+.....    +.+..-....|+
T Consensus        80 ~~~~~-~----------------------~~~~~~~l~~~~-~gT~l~~~~~-----~~~~~~~----~~~~~Gw~~~L~  126 (144)
T 2lgh_A           80 SFVMD-D----------------------GREVDVQFASEP-GGTWVQETFD-----AETSHTP----AQQQAGWQGILD  126 (144)
T ss_dssp             EEEET-T----------------------CCEEEEEEEEET-TEEEEEEEEE-----CCTTSCH----HHHHHHHHHHHH
T ss_pred             EEEec-C----------------------CcEEEEEEEEcC-CCEEEEEEEE-----CCCHHHH----HHHHHHHHHHHH
Confidence            99862 1                      256688899886 5665554432     2222222    224555677899


Q ss_pred             HHHHHHhhhhh
Q 028067          194 SLADVSEHLAV  204 (214)
Q Consensus       194 ~L~~~le~~a~  204 (214)
                      .|++.+|..+.
T Consensus       127 ~L~~~le~~~~  137 (144)
T 2lgh_A          127 NFKRYVEAAGL  137 (144)
T ss_dssp             HHHHHHHHSCC
T ss_pred             HHHHHHhhCcc
Confidence            99999988654

>2kew_A Uncharacterized protein YNDB; start domain, resonance assignments, lipid binding, structural genomics, unknown FU PSI-2; NMR {Bacillus subtilis subsp} PDB: 2kte_A

Probab=98.80  E-value=7.1e-09  Score=81.61  Aligned_cols=131  Identities=13%  Similarity=0.068  Sum_probs=86.8

Q ss_pred             CCceEEEEEeeeecCCHHHHHHHHhcCCCCCccCccceEEEEecCCCCCeEEEEEeeCCCCcceEEEEEEEEeCCCcEEE
Q 028067           35 HDHQCSSSLVKHIKAPVHLVWSLVRRFDQPQKYKPFVSRCIVQGDLQIGSVREVNVKSGLPATTSTERLELLDDEEHIFG  114 (214)
Q Consensus        35 ~~~~ve~sI~~~I~APae~VW~vi~Df~~l~~W~P~V~s~~veG~g~VGsvR~l~~~~G~p~~~v~ErL~~~D~~~~~~~  114 (214)
                      ...+++.++  .|+||+++||+++.|+..++.|.+.     .+++..+|....+.+..|    .+.-++++++| .+++.
T Consensus         8 ~~~~i~~~~--~i~Ap~e~Vw~altd~~~~~~W~~~-----~~~~~~~Gg~~~~~~~~g----~~~~~v~e~~p-~~~l~   75 (152)
T 2kew_A            8 ALPDITKSI--TLEAPIQKVWETVSTSEGIAKWFMP-----NDFQLKEGQEFHLQSPFG----PSPCKVLAVQA-PTELS   75 (152)
T ss_dssp             SSCCEEEEE--EECSCHHHHHHHSSSSHHHHHHHCS-----CCCCSCSSCCBCSSSSCC----SCCBEEEEEET-TTEEE
T ss_pred             cccEEEEEE--EECCCHHHHHHHHhCHHHHHHhcCC-----CCCCCCCCCEEEEEecCC----ceEEEEEEEeC-CcEEE
Confidence            456788888  9999999999999999999999875     234444666544444334    25667889999 57788


Q ss_pred             EEEEcCcccceeeeccccccccCCCcceeeEEEEEEEeecCCCcceEEEEEEEEeeCC-CCC-----CHHHHHHHHHHHH
Q 028067          115 MRIVGGDHRLKIIWNFSNFISTSSSKLQNYSSIVTVHPEVIDGRPGTLVIESFVVDVP-DGN-----TKDETCYFVEALI  188 (214)
Q Consensus       115 Y~iv~g~~~~~~~~~~~~~~~~~~~p~~~y~ati~v~p~~~~gs~~t~~~~s~~~~~p-~~~-----~~~~~~~~v~~~~  188 (214)
                      |+...+                      ....+++|.|.+ +||.++++...  +... +..     ..+.....+..-.
T Consensus        76 ~~~~~~----------------------~~~~~~~l~~~~-~gT~l~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~GW  130 (152)
T 2kew_A           76 FEWDTE----------------------GWVVTFQLEDLG-EKTGFTLIHSG--WKEPNQVIGKANEKSSVVRGKMDGGW  130 (152)
T ss_dssp             EECTTS----------------------CCEEEEEEECCS-SCEEEEEEECC--SSCCSBCSSSSSSBHHHHHHHHHHHH
T ss_pred             EEEccC----------------------CEEEEEEEEECC-CCEEEEEEEEe--ccCcccccccccchhHHHHHHHHHhH
Confidence            875321                      456788899876 56655544321  1111 111     1233344566677


Q ss_pred             HHHH-HHHHHHHhhh
Q 028067          189 KCNL-KSLADVSEHL  202 (214)
Q Consensus       189 ~~gL-~~L~~~le~~  202 (214)
                      ...| +.|++.++..
T Consensus       131 ~~~l~~~L~~~le~g  145 (152)
T 2kew_A          131 TGIVNERLRKAVEEL  145 (152)
T ss_dssp             HHHTTTHHHHHHTCS
T ss_pred             HHHHHHHHHHHHhcc
Confidence            8888 9999998864

>2l8o_A Uncharacterized protein; mixed alpha-beta protein, PSI-biology, structural genomics, structure initiative; NMR {Cytophaga hutchinsonii}

Probab=98.79  E-value=3.4e-07  Score=71.36  Aligned_cols=129  Identities=12%  Similarity=0.097  Sum_probs=83.7

Q ss_pred             eEEEEEeeeecCCHHHHHHHHhcCCCCCcc-Cc--cceEEEEecCCCCCeEEEEEee--CCCCcceEEEEEEEEeCCCcE
Q 028067           38 QCSSSLVKHIKAPVHLVWSLVRRFDQPQKY-KP--FVSRCIVQGDLQIGSVREVNVK--SGLPATTSTERLELLDDEEHI  112 (214)
Q Consensus        38 ~ve~sI~~~I~APae~VW~vi~Df~~l~~W-~P--~V~s~~veG~g~VGsvR~l~~~--~G~p~~~v~ErL~~~D~~~~~  112 (214)
                      .+..++  .|+||+++||+++.|...+..| .+  .......+++..+|..-.+.+.  +|.....+.-++.+++| .++
T Consensus         3 ~i~~~~--~i~Ap~e~Vw~altdpe~~~~W~~~p~~~~~~~~~~d~~~Gg~~~~~~~~~~G~~~~~~~g~v~e~~p-~~~   79 (144)
T 2l8o_A            3 KITVEV--TVYAAIEKVWKYWNEPAHIMKWCQASPEWHVPAAQNDLKAGGTFTTTMAAKDGSMSFDFGGVYDQVKT-NDL   79 (144)
T ss_dssp             SEEEEE--EECSCHHHHHHHHHCHHHHHHHSTTCTTCEEEEEECCCSTTCEEEEEEECTTSSCEEEEEEEEEEEET-TTE
T ss_pred             EEEEEE--EECCCHHHHHHHHCCHHHHhhccCCCCCcccceeEEccCCCCEEEEEEECCCCCceeeeeEEEEEEeC-CCE
Confidence            355566  8999999999999999999999 54  2222223455556665544443  44201246778999999 578


Q ss_pred             EEEEEEcCcccceeeeccccccccCCCcceeeEEEEEEEeecCCCcceEEEEEEEEeeCCCCCCHHHHHHHHHHHHHHHH
Q 028067          113 FGMRIVGGDHRLKIIWNFSNFISTSSSKLQNYSSIVTVHPEVIDGRPGTLVIESFVVDVPDGNTKDETCYFVEALIKCNL  192 (214)
Q Consensus       113 ~~Y~iv~g~~~~~~~~~~~~~~~~~~~p~~~y~ati~v~p~~~~gs~~t~~~~s~~~~~p~~~~~~~~~~~v~~~~~~gL  192 (214)
                      +.|+.. |                      ....++.|.|.+ ++|.++++..     .+.....    +.+..-....|
T Consensus        80 l~~~~~-g----------------------~~~v~~~l~~~~-~gT~l~~~~~-----~~~~~~~----~~~~~Gw~~~L  126 (144)
T 2l8o_A           80 IEYTIG-D----------------------GRKVRIVFTHTG-DTTNIVESFD-----PEETNPR----ELQQSGWQAIL  126 (144)
T ss_dssp             EEEEET-T----------------------CCEEEEEEEECS-SSEEEEEEEC-----CCSSSCH----HHHHHHHHHHH
T ss_pred             EEEEeC-C----------------------CeEEEEEEEEcC-CCEEEEEEEe-----CCCHHHH----HHHHHHHHHHH
Confidence            899862 1                      356788899876 6775554432     2322222    22345566789


Q ss_pred             HHHHHHHhhh
Q 028067          193 KSLADVSEHL  202 (214)
Q Consensus       193 ~~L~~~le~~  202 (214)
                      +.|++.++..
T Consensus       127 ~~L~~~le~~  136 (144)
T 2l8o_A          127 NSFKSYTENN  136 (144)
T ss_dssp             HHHHHHHGGG
T ss_pred             HHHHHHHHhH
Confidence            9999998873

>3rd6_A MLL3558 protein; structural genomics, PSI-biology, northeast structural genom consortium, NESG, unknown function; 2.80A {Mesorhizobium loti}

Probab=98.78  E-value=2.2e-07  Score=73.82  Aligned_cols=139  Identities=10%  Similarity=0.024  Sum_probs=87.2

Q ss_pred             eEEEEEeeeecCCHHHHHHHHhcCCCCCccCcc---ceEEEEecCCCCCeEEEEEee--CCCCcceEEEEEEEEeCCCcE
Q 028067           38 QCSSSLVKHIKAPVHLVWSLVRRFDQPQKYKPF---VSRCIVQGDLQIGSVREVNVK--SGLPATTSTERLELLDDEEHI  112 (214)
Q Consensus        38 ~ve~sI~~~I~APae~VW~vi~Df~~l~~W~P~---V~s~~veG~g~VGsvR~l~~~--~G~p~~~v~ErL~~~D~~~~~  112 (214)
                      .+.-++  .|+||+++||++++|...+..|.+.   +.....+++..+|..-.+.+.  +|.. ....-++++++| .++
T Consensus         9 ~i~~~r--~i~Ap~e~Vw~altdp~~~~~W~~~~~~~~~~~~~~d~~~Gg~~~~~~~~~~G~~-~~~~g~v~e~~p-~~r   84 (161)
T 3rd6_A            9 TFTIER--TYPQSPDRVFHAFADKATVRRWRVDGDGFTVAEFSFDFRVGGGEVSRFSYGGGPE-VRLDAQFQDIVP-DQR   84 (161)
T ss_dssp             EEEEEE--EESSCHHHHHHHHHCHHHHHHHTCCCCC---CEEEECCSTTCEEEEEECSTTSCC-EEEEEEEEEEET-TTE
T ss_pred             eEEEEE--EECCCHHHHHHHhcCHHHHhhccCCCCCceeeEEEEccCcCCEEEEEEECCCCCE-EEEEEEEEEEcC-CCE
Confidence            444444  8999999999999999999999843   222123455557766555553  3532 247788999999 577


Q ss_pred             EEEEEEcCcccceeeeccccccccCCCcceeeEEEEEEEeecCCCcceEEEEEEEEeeCCCCCCHHHHHHHHHHHHHHHH
Q 028067          113 FGMRIVGGDHRLKIIWNFSNFISTSSSKLQNYSSIVTVHPEVIDGRPGTLVIESFVVDVPDGNTKDETCYFVEALIKCNL  192 (214)
Q Consensus       113 ~~Y~iv~g~~~~~~~~~~~~~~~~~~~p~~~y~ati~v~p~~~~gs~~t~~~~s~~~~~p~~~~~~~~~~~v~~~~~~gL  192 (214)
                      +.|+..-...               ..|......++.+.|.+ +||.++++......+..  ..   . ..++.=....|
T Consensus        85 l~~~~~~~~~---------------~~~~~~s~v~~~l~~~~-~gT~lt~~~~~~~~~~~--~~---~-~~~~~GW~~~L  142 (161)
T 3rd6_A           85 IVFSYRMAIG---------------PQPMSASLTTVELTPSG-DGTRLTYTEQGAFFDGV--DS---A-KGREEGTRGLL  142 (161)
T ss_dssp             EEEEEEEEET---------------TEEEEEEEEEEEEEEET-TEEEEEEEEEEEEETTC--CC---H-HHHHHHHHHHH
T ss_pred             EEEEEEecCC---------------CCCCCceEEEEEEEECC-CCEEEEEEEEecCcchh--hh---H-HHHHHHHHHHH
Confidence            8887642100               01234567889999987 57877776654322211  11   1 33466678889


Q ss_pred             HHHHHHHhhh
Q 028067          193 KSLADVSEHL  202 (214)
Q Consensus       193 ~~L~~~le~~  202 (214)
                      +.|+++|+..
T Consensus       143 ~~L~~~le~~  152 (161)
T 3rd6_A          143 EALAAELQKW  152 (161)
T ss_dssp             HHHHHHC---
T ss_pred             HHHHHHHhhc
Confidence            9999988874

>2qpv_A Uncharacterized protein ATU1531; structural genomics, PSI protein structure initiative, midwest center for structural genomics; 2.35A {Agrobacterium tumefaciens str} SCOP: d.129.3.8

Probab=98.78  E-value=1e-07  Score=76.92  Aligned_cols=130  Identities=12%  Similarity=0.100  Sum_probs=79.3

Q ss_pred             CCCCCceEEEEEeeeecCCHHHHHHHHhcCCCCCccCccceEEEEecCCCCCeEEEEE-eeCCCCcceEEEEEEEEeCCC
Q 028067           32 HDVHDHQCSSSLVKHIKAPVHLVWSLVRRFDQPQKYKPFVSRCIVQGDLQIGSVREVN-VKSGLPATTSTERLELLDDEE  110 (214)
Q Consensus        32 ~~~~~~~ve~sI~~~I~APae~VW~vi~Df~~l~~W~P~V~s~~veG~g~VGsvR~l~-~~~G~p~~~v~ErL~~~D~~~  110 (214)
                      |.|--..++.+|  +|++|+++||++++|+.+++.|.+.++++ ++.+   ++-+..+ .+-|    .++   ..+++.+
T Consensus        22 ~~~~m~~~~~si--~I~ap~eeVy~~~~D~e~lP~W~~~l~~~-~~~~---~~~w~a~~~p~G----~v~---v~~~~~~   88 (156)
T 2qpv_A           22 HMPVMQSRIIHL--SVEKPWAEVYDFAANPGNMPRWAAGLAGG-LEAD---GEDWIAKGGPLG----EVR---VNFAPHN   88 (156)
T ss_dssp             -CCCCCEEEEEE--EESSCHHHHHHHHHCGGGGGGTCGGGTTC-CEEE---TTEEEEECSSSC----EEE---EEECCCC
T ss_pred             CCCCccceEEEE--EEcCCHHHHHHHHHChhhHHHHHHhhhhh-cccC---CCcEEEeccCCC----cEE---EEEecCC
Confidence            444455678888  99999999999999999999999999876 3211   1223333 2122    222   2233322


Q ss_pred             --cE-EEEEEEcCcccceeeeccccccccCCCcceeeEEEEEEEeecCCCcceEEEEEEEEeeCCCCCCHHHHHHHHHHH
Q 028067          111 --HI-FGMRIVGGDHRLKIIWNFSNFISTSSSKLQNYSSIVTVHPEVIDGRPGTLVIESFVVDVPDGNTKDETCYFVEAL  187 (214)
Q Consensus       111 --~~-~~Y~iv~g~~~~~~~~~~~~~~~~~~~p~~~y~ati~v~p~~~~gs~~t~~~~s~~~~~p~~~~~~~~~~~v~~~  187 (214)
                        .. ..|....+.                    ..-...++|.|.+ +||++++++.     .+++.....+ +.-...
T Consensus        89 ~~gv~d~~~~l~~g--------------------~~~~~~~rv~p~g-~GTeV~~tl~-----~~pg~~~~~~-~~~~~~  141 (156)
T 2qpv_A           89 EFGVIDHVVTLPDG--------------------LKVYNALRVTPNG-SGTEVSFTLL-----RLEGMTDEDF-EQDASA  141 (156)
T ss_dssp             SSCBCCEEEECTTS--------------------CEEEEEEEEEEET-TEEEEEEEEE-----CCTTCCHHHH-HHHHHH
T ss_pred             CceEEEEEEecCCC--------------------cEEEEEEEEEeCC-CCEEEEEEEe-----cCCCCChhhh-hhhHHH
Confidence              11 123322210                    1122357788876 5787777762     2444555555 344557


Q ss_pred             HHHHHHHHHHHHhh
Q 028067          188 IKCNLKSLADVSEH  201 (214)
Q Consensus       188 ~~~gL~~L~~~le~  201 (214)
                      +...|++||+++|.
T Consensus       142 v~~dL~~LK~l~E~  155 (156)
T 2qpv_A          142 ITADLEMLKSLLEA  155 (156)
T ss_dssp             HHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHhC
Confidence            89999999999984

>2l9p_A Uncharacterized protein; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Staphylococcus epidermidis}

Probab=98.77  E-value=8.5e-08  Score=76.16  Aligned_cols=145  Identities=8%  Similarity=0.003  Sum_probs=88.8

Q ss_pred             CceEEEEEeeeecCCHHHHHHHHhcCCCCCccCc-c-ceEEEEecCCCCCeEEEEEee--CCCCcceEEEEEEEEeCCCc
Q 028067           36 DHQCSSSLVKHIKAPVHLVWSLVRRFDQPQKYKP-F-VSRCIVQGDLQIGSVREVNVK--SGLPATTSTERLELLDDEEH  111 (214)
Q Consensus        36 ~~~ve~sI~~~I~APae~VW~vi~Df~~l~~W~P-~-V~s~~veG~g~VGsvR~l~~~--~G~p~~~v~ErL~~~D~~~~  111 (214)
                      ...+..++  .|+||+++||+++.|...+..|.+ . +.....+++..+|..-.+.+.  +|.. . ..-++++++| .+
T Consensus         7 ~~~i~~~~--~i~Ap~e~Vw~a~tdpe~~~~W~~p~~~~~~~~~~d~~~Gg~~~~~~~~~~G~~-~-~~g~v~e~~p-~~   81 (164)
T 2l9p_A            7 KNKIIFTR--TFSAPINKVFDAYTKRELFEQWFHPQDASVTVYDFNATKGGSAFYAIQAPQMIS-Y-TIAEYLQVDA-PY   81 (164)
T ss_dssp             SSEEEECC--EESSCHHHHHHHHHCHHHHTTTCCCTTCEEEEEECCCSTTEEEEEEEEETTEEE-E-EEEEESCCBT-TT
T ss_pred             CceEEEEE--EeCCCHHHHHHHhCCHHHHHhccCCCCceeeEEEEeccCCCEEEEEEECCCCCE-E-EEEEEEEEcC-CC
Confidence            34566666  999999999999999999999964 2 222234566667766554443  4431 2 6778999999 57


Q ss_pred             EEEEEEEcCcccceeeeccccccccCCC-cceeeEEEEEEEeecCCCcceEEEEEEEEeeCCCCCCHHHH-HHHHHHHHH
Q 028067          112 IFGMRIVGGDHRLKIIWNFSNFISTSSS-KLQNYSSIVTVHPEVIDGRPGTLVIESFVVDVPDGNTKDET-CYFVEALIK  189 (214)
Q Consensus       112 ~~~Y~iv~g~~~~~~~~~~~~~~~~~~~-p~~~y~ati~v~p~~~~gs~~t~~~~s~~~~~p~~~~~~~~-~~~v~~~~~  189 (214)
                      ++.|+...++...            .|. .......++.|+|.+ ++|.++++..   +. + ....+.+ ...+..=..
T Consensus        82 rl~~t~~~~~~~g------------~p~~~~~~~~v~~~l~~~~-~gT~l~~~~~---~~-~-~~~~~~~~~~~~~~Gw~  143 (164)
T 2l9p_A           82 YIEYLDYFATSKG------------EKDTSMPGMHITLNFEEVK-GKTTVTSTST---FP-T-ESAAQQAIDMGVETGMN  143 (164)
T ss_dssp             EEEEEEEEEBTTB------------SCCSSSCCEEEEEEECCCS-SSEEEEEEEE---CS-S-TTHHHHHHHHTHHHHHH
T ss_pred             EEEEEEEecCCCC------------CccCCCCceEEEEEEEECC-CCEEEEEEEE---cC-C-HHHHHHHHHhhHHHHHH
Confidence            7888764321100            000 112467888898876 5775555532   22 2 1111111 112455567


Q ss_pred             HHHHHHHHHHhhhh
Q 028067          190 CNLKSLADVSEHLA  203 (214)
Q Consensus       190 ~gL~~L~~~le~~a  203 (214)
                      ..|+.|++.|+++.
T Consensus       144 ~~L~~L~~~le~~~  157 (164)
T 2l9p_A          144 STLNQLEKLLNQKL  157 (164)
T ss_dssp             HHHHHHHHHHHSSC
T ss_pred             HHHHHHHHHHHHhh
Confidence            78999999998764

>2lf2_A Uncharacterized protein; NESG, structural genomics, PSI-biology, protein structure in northeast structural genomics consortium; NMR {Cytophaga hutchinsonii}

Probab=98.76  E-value=1.7e-07  Score=75.33  Aligned_cols=145  Identities=10%  Similarity=-0.030  Sum_probs=90.0

Q ss_pred             CCCceEEEEEeeeecCCHHHHHHHHhcCCCCCccCc-c-ceEEEEecCCCCCeEEEEEee--CCCCcceEEEEEEEEeCC
Q 028067           34 VHDHQCSSSLVKHIKAPVHLVWSLVRRFDQPQKYKP-F-VSRCIVQGDLQIGSVREVNVK--SGLPATTSTERLELLDDE  109 (214)
Q Consensus        34 ~~~~~ve~sI~~~I~APae~VW~vi~Df~~l~~W~P-~-V~s~~veG~g~VGsvR~l~~~--~G~p~~~v~ErL~~~D~~  109 (214)
                      +....++.++  .|+||+++||+++.|...+..|.+ . +.....+++..+|..-.+.+.  +|.. ....-++++++| 
T Consensus        13 ~~~~~i~~~~--~i~Ap~e~Vw~a~tdpe~~~~W~~p~~~~~~~~~~d~~~Gg~~~~~~~~~~G~~-~~~~g~v~e~~p-   88 (175)
T 2lf2_A           13 KENKTITIKR--EFAAVRAIVWEAFTRAEILDQWWAPKPWKAKTKSMDFKEGGTWLYAMVGPNGEE-HWSICEYAIIKP-   88 (175)
T ss_dssp             TTTTEEEEEE--EESSCHHHHHHHHTCHHHHHHSSSSSSSEEEEEEECCSTTCEEEEEEECSSSCE-EEEEEEECCCCS-
T ss_pred             CCCceEEEEE--EEcCCHHHHHHHhCCHHHHhhCcCCCCccceEEEEeccCCCEEEEEEECCCCCE-EEeEEEEEEEcC-
Confidence            4556788888  999999999999999999999963 2 222223455556666544443  4532 236778999998 


Q ss_pred             CcEEEEEEEcCcccceeeeccccccccCCC-cceeeEEEEEEEeecCCCcceEEEEEEEEeeCCCCCCHHHHHH----HH
Q 028067          110 EHIFGMRIVGGDHRLKIIWNFSNFISTSSS-KLQNYSSIVTVHPEVIDGRPGTLVIESFVVDVPDGNTKDETCY----FV  184 (214)
Q Consensus       110 ~~~~~Y~iv~g~~~~~~~~~~~~~~~~~~~-p~~~y~ati~v~p~~~~gs~~t~~~~s~~~~~p~~~~~~~~~~----~v  184 (214)
                      .+++.|+..-.+...            .|. .+.....++.++|.+ +||.++++..   +  +.   .+....    .+
T Consensus        89 ~~rl~~t~~~~~~~g------------~p~~~~~~~~v~~~l~~~~-~gT~l~~~~~---~--~~---~~~~~~~~~~~~  147 (175)
T 2lf2_A           89 IERFTGKDGFTDASG------------KLNTEMPRSNWDMRFIDKG-EITEVQYHIS---Y--DD---VAQLEATIQMGF  147 (175)
T ss_dssp             SSEEEEEEEEESSTT------------CCCTTSCCEEEEEEEEEET-TEEEEEEEEE---C--SC---HHHHHHHHHHHH
T ss_pred             CCEEEEEEEecCCCC------------CcCCCCCcEEEEEEEEECC-CCEEEEEEEe---c--CC---HHHHHHHHHHhH
Confidence            577888764321000            000 112577889999986 5775555532   2  11   112222    23


Q ss_pred             HHHHHHHHHHHHHHHhhhh
Q 028067          185 EALIKCNLKSLADVSEHLA  203 (214)
Q Consensus       185 ~~~~~~gL~~L~~~le~~a  203 (214)
                      ..=....|+.|++.|+...
T Consensus       148 ~~Gw~~~L~~L~~~le~~~  166 (175)
T 2lf2_A          148 KEGITMAMENLDELLVSGK  166 (175)
T ss_dssp             HHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHhCc
Confidence            4556778899999988744

>2nn5_A Hypothetical protein EF_2215; structural genomics, APC29336, PSI-2, structure initiative; HET: MSE; 1.45A {Enterococcus faecalis} SCOP: d.129.3.5

Probab=98.73  E-value=2.4e-07  Score=75.98  Aligned_cols=129  Identities=11%  Similarity=0.051  Sum_probs=85.2

Q ss_pred             CCCceEEEEEeeeecCCHHHHHHHHhcCCCCCccCccceEEEEecCCCCCeEEEEEeeCCCCcceEEEEEEEEeCCCcEE
Q 028067           34 VHDHQCSSSLVKHIKAPVHLVWSLVRRFDQPQKYKPFVSRCIVQGDLQIGSVREVNVKSGLPATTSTERLELLDDEEHIF  113 (214)
Q Consensus        34 ~~~~~ve~sI~~~I~APae~VW~vi~Df~~l~~W~P~V~s~~veG~g~VGsvR~l~~~~G~p~~~v~ErL~~~D~~~~~~  113 (214)
                      .+..++..++  +|+||+++||+++.|+..++.|.|.+...+.    .+|....+.+.+ .   ...-++.+++| .+++
T Consensus        33 ~~~~~i~~~~--~i~Ap~e~VW~altdp~~l~~W~~~~~~~d~----~~Gg~~~~~~~~-~---~~~~~v~e~~p-~~rl  101 (184)
T 2nn5_A           33 NQTIYFGTER--AISASPQTIWRYLTETDKLKQWFPELEIGEL----GVNGFWRFILPD-F---EETMPFTDYAE-EKYL  101 (184)
T ss_dssp             TTEEEEEEEE--EESSCHHHHHHHHHCHHHHHHHCTTEEEEEC----STTCEEEEEETT-E---EEEEEEEEEET-TTEE
T ss_pred             CCCcEEEEEE--EeCCCHHHHHHHHcCHHHHHHhCCCcccccc----CCCCEEEEEEeC-C---CceEEEEEecC-CCEE
Confidence            3446777777  9999999999999999999999986543322    245454455533 1   35668999999 4777


Q ss_pred             EEEEEcCcccceeeeccccccccCCCcceeeEEEEEEEe-ecCCCcceEEEEEEEEeeCCCCCCHHHHHHHHHHHHHHHH
Q 028067          114 GMRIVGGDHRLKIIWNFSNFISTSSSKLQNYSSIVTVHP-EVIDGRPGTLVIESFVVDVPDGNTKDETCYFVEALIKCNL  192 (214)
Q Consensus       114 ~Y~iv~g~~~~~~~~~~~~~~~~~~~p~~~y~ati~v~p-~~~~gs~~t~~~~s~~~~~p~~~~~~~~~~~v~~~~~~gL  192 (214)
                      .|+..                        ....++.|.| .+ ++|.++++. .+.-..++.  .+    .+..-+...|
T Consensus       102 ~~~~~------------------------~~~v~~~l~~~~~-~gT~l~~~~-~~~~g~~~~--~~----~~~~GW~~~L  149 (184)
T 2nn5_A          102 GVTWD------------------------TGIIYFDLKEQAP-HQTLLVFSE-SLPENFTTP--RH----KDIAGWSIVL  149 (184)
T ss_dssp             EEEET------------------------TEEEEEEEEEEET-TEEEEEEEE-EECTTCSSC--HH----HHHHHHHHHH
T ss_pred             EEEEc------------------------CeEEEEEEEECCC-CCEEEEEEE-eccCCccch--hh----HHHHHHHHHH
Confidence            87651                        2466888988 54 677555552 111012221  11    1455677889


Q ss_pred             HHHHHHHhhhhhc
Q 028067          193 KSLADVSEHLAVQ  205 (214)
Q Consensus       193 ~~L~~~le~~a~~  205 (214)
                      +.|++.+|.....
T Consensus       150 ~~Lk~~le~g~~~  162 (184)
T 2nn5_A          150 NRLKQVVETPDAA  162 (184)
T ss_dssp             HHHHHHHHCTTCC
T ss_pred             HHHHHHHhcCCCC
Confidence            9999999875443

>3put_A Hypothetical conserved protein; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium; 1.83A {Rhizobium etli cfn 42} PDB: 3otl_A*

Probab=98.73  E-value=3.2e-07  Score=73.49  Aligned_cols=141  Identities=11%  Similarity=-0.019  Sum_probs=88.7

Q ss_pred             eEEEEEeeeecCCHHHHHHHHhcCCCCCccCc-c----ceEEEEecCCCCCeEEEEEe--eCCCCcceEEEEEEEEeCCC
Q 028067           38 QCSSSLVKHIKAPVHLVWSLVRRFDQPQKYKP-F----VSRCIVQGDLQIGSVREVNV--KSGLPATTSTERLELLDDEE  110 (214)
Q Consensus        38 ~ve~sI~~~I~APae~VW~vi~Df~~l~~W~P-~----V~s~~veG~g~VGsvR~l~~--~~G~p~~~v~ErL~~~D~~~  110 (214)
                      .+.-++  .|+||+++||+++.|...+..|.+ .    +..+  +++..+|....+.+  .+|.. ..+.-++++++| .
T Consensus        10 ~i~~~r--~i~Ap~e~Vw~a~Tdpe~l~~W~~~~~~~~~~~~--~~d~~~GG~~~~~~~~~~G~~-~~~~g~v~ev~p-~   83 (166)
T 3put_A           10 TFVIER--RLTAPVARVFRAWSTPESKRQWFACHGEWVPLEY--ALDFRPGGTERNYTADTDGLL-HAYDARYIDIVP-D   83 (166)
T ss_dssp             EEEEEE--EESSCHHHHHHHHHCHHHHHHHHTCC---CCSEE--EECCSTTCEEEEEEECTTSCE-EEEEEEEEEEET-T
T ss_pred             eEEEEE--EECCCHHHHHHHhCCHHHHHhcCCCCCCceeeEE--EeCcccCCEEEEEEECCCCCE-EEEEEEEEEEcC-C
Confidence            344445  899999999999999999999973 2    2223  34445665554444  35531 236788999999 5


Q ss_pred             cEEEEEEEcCcccceeeeccccccccCCCcceeeEEEEEEEeecCCCcceEEEEEEEEeeCCCCCCHHHHHHHHHHHHHH
Q 028067          111 HIFGMRIVGGDHRLKIIWNFSNFISTSSSKLQNYSSIVTVHPEVIDGRPGTLVIESFVVDVPDGNTKDETCYFVEALIKC  190 (214)
Q Consensus       111 ~~~~Y~iv~g~~~~~~~~~~~~~~~~~~~p~~~y~ati~v~p~~~~gs~~t~~~~s~~~~~p~~~~~~~~~~~v~~~~~~  190 (214)
                      +++.|+..-...               ..|...-..++.+.|.+ +||.++++......+..+  ..    ..++.=...
T Consensus        84 ~rlv~t~~~~~~---------------~~~~~~s~vt~~l~~~~-~gT~ltl~~~~~~~~~~~--~~----~~~~~GW~~  141 (166)
T 3put_A           84 TRIIYAYEMKLG---------------QTRISASLVTVAFDVEP-SGTRMVFTEQVVFLDGYG--DN----GARLQGTEI  141 (166)
T ss_dssp             TEEEEEEEEEET---------------TEEEEEEEEEEEEEECS-SSEEEEEEEEEEEETTCC--CT----THHHHHHHH
T ss_pred             cEEEEEEEecCC---------------CCCCCceEEEEEEEECC-CCEEEEEEEEecCccchh--hH----HHHHHHHHH
Confidence            778887642100               01234567788899876 678777766543222111  11    234556677


Q ss_pred             HHHHHHHHHhhhhhcC
Q 028067          191 NLKSLADVSEHLAVQD  206 (214)
Q Consensus       191 gL~~L~~~le~~a~~~  206 (214)
                      .|+.|++.||...++-
T Consensus       142 ~L~~L~~~le~~~~~~  157 (166)
T 3put_A          142 GLDNLELFLVRETSPI  157 (166)
T ss_dssp             HHHHHHHHHHHHC---
T ss_pred             HHHHHHHHHhcCCCcc
Confidence            8999999999876553

>3q64_A MLL3774 protein; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.50A {Mesorhizobium loti}

Probab=98.70  E-value=2e-07  Score=74.07  Aligned_cols=141  Identities=11%  Similarity=-0.014  Sum_probs=89.7

Q ss_pred             eEEEEEeeeecCCHHHHHHHHhcCCCCCccCccce--EE-EEecCCCCCeEEEEEee--CCCCcceEEEEEEEEeCCCcE
Q 028067           38 QCSSSLVKHIKAPVHLVWSLVRRFDQPQKYKPFVS--RC-IVQGDLQIGSVREVNVK--SGLPATTSTERLELLDDEEHI  112 (214)
Q Consensus        38 ~ve~sI~~~I~APae~VW~vi~Df~~l~~W~P~V~--s~-~veG~g~VGsvR~l~~~--~G~p~~~v~ErL~~~D~~~~~  112 (214)
                      .+.-++  .|+||+++||+++.|...+.+|.+...  .+ ..+++..+|..-.+.+.  +|.. ....-++++++| .++
T Consensus        10 ~i~~~r--~i~Ap~e~Vw~altdp~~~~~W~~~~~g~~~~~~~~d~~~Gg~~~~~~~~~~G~~-~~~~g~v~e~~p-~~r   85 (162)
T 3q64_A           10 TFIIER--LYPAPPSKVFFALGNADAKRRWFTDPDNPMPGRFEMDFRVGGKEVNAGGPKDGPI-HVYTATYQDIVP-DQR   85 (162)
T ss_dssp             EEEEEE--EESSCHHHHHHHHHCHHHHHHHSSCTTSCCGGGCEECCSTTCEEEEEECCTTSCC-EEEEEEEEEEET-TTE
T ss_pred             eEEEEE--EeCCCHHHHHHHHCCHHHHhhcCCCCCCccceEEEECCccCCEEEEEEECCCCCE-EEEEEEEEEEcC-CCE
Confidence            344444  899999999999999999999984321  11 12344456666555543  4531 247788999999 577


Q ss_pred             EEEEEEcCcccceeeeccccccccCCCcceeeEEEEEEEeecCCCcceEEEEEEEEeeCCCCCCHHHHHHHHHHHHHHHH
Q 028067          113 FGMRIVGGDHRLKIIWNFSNFISTSSSKLQNYSSIVTVHPEVIDGRPGTLVIESFVVDVPDGNTKDETCYFVEALIKCNL  192 (214)
Q Consensus       113 ~~Y~iv~g~~~~~~~~~~~~~~~~~~~p~~~y~ati~v~p~~~~gs~~t~~~~s~~~~~p~~~~~~~~~~~v~~~~~~gL  192 (214)
                      +.|+..-... .              .|......++.+.|.+ +||.++++......+..  ..   . ..+..=....|
T Consensus        86 l~~~~~~~~~-~--------------~~~~~s~v~~~l~~~~-~gT~lt~~~~~~~~~~~--~~---~-~~~~~GW~~~L  143 (162)
T 3q64_A           86 IVYSYDMLFG-E--------------TRISVSLATIQLFAEG-EGTRLVLTEQGAFLDGH--DT---P-STREHGTGVLL  143 (162)
T ss_dssp             EEEEEEEEET-T--------------EEEEEEEEEEEEEEET-TEEEEEEEEEEEEETTS--SC---H-HHHHHHHHHHH
T ss_pred             EEEEEEecCC-C--------------CCCCceEEEEEEEEcC-CCEEEEEEEEecCccch--hH---H-HHHHHHHHHHH
Confidence            8887742100 0              1234567889999987 57777766553321211  11   1 34466778889


Q ss_pred             HHHHHHHhhhhh
Q 028067          193 KSLADVSEHLAV  204 (214)
Q Consensus       193 ~~L~~~le~~a~  204 (214)
                      +.|+++|++.-.
T Consensus       144 ~~L~~~le~~~~  155 (162)
T 3q64_A          144 DLLDAFLDKTTL  155 (162)
T ss_dssp             HHHHHHHHHHHT
T ss_pred             HHHHHHHhhchh
Confidence            999999988543

>2k5g_A Uncharacterized protein; structural genomiccs, protein structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis} SCOP: d.129.3.5

Probab=98.69  E-value=1.9e-07  Score=76.65  Aligned_cols=132  Identities=13%  Similarity=0.115  Sum_probs=89.1

Q ss_pred             CceEEEEEeeeecCCHHHHHHHHhcCCCCCccCccceEEEEecCCCCCeEEEEEeeCC---------------CCcceEE
Q 028067           36 DHQCSSSLVKHIKAPVHLVWSLVRRFDQPQKYKPFVSRCIVQGDLQIGSVREVNVKSG---------------LPATTST  100 (214)
Q Consensus        36 ~~~ve~sI~~~I~APae~VW~vi~Df~~l~~W~P~V~s~~veG~g~VGsvR~l~~~~G---------------~p~~~v~  100 (214)
                      ...++.++  .|+||+++||++++|...+..|.+.+     +.+..+|....+.+...               . ...+.
T Consensus        18 ~~~i~~~~--~i~Ap~e~Vw~altdpe~~~~W~~~~-----~~d~~~Gg~~~~~~~~~~~~~~~~p~~~~~~g~-~~~~~   89 (191)
T 2k5g_A           18 AQSIRFER--LLPGPIERVWAWLADADKRARWLAGG-----ELPRQPGQTFELHFNHAALTAETAPARYAQYDR-PIVAR   89 (191)
T ss_dssp             CSSEEEEE--EESSSSHHHHHHHHCHHHHTTTSCCC-----CCCSSTTCEEEEEECGGGSCCSSCCSSCSGGGS-CEEEE
T ss_pred             CCeEEEEE--EeCCCHHHHHHHHcCHHHHhhcCCCC-----CCCccCCCEEEEEEcCCccccccCcccccccCC-CceeE
Confidence            45677777  99999999999999999999999763     34555777766666421               1 12467


Q ss_pred             EEEEEEeCCCcEEEEEEEcCcccceeeeccccccccCCCcceeeEEEEEEEeecCCCcceEEEEEEEEeeCCCCCCHHHH
Q 028067          101 ERLELLDDEEHIFGMRIVGGDHRLKIIWNFSNFISTSSSKLQNYSSIVTVHPEVIDGRPGTLVIESFVVDVPDGNTKDET  180 (214)
Q Consensus       101 ErL~~~D~~~~~~~Y~iv~g~~~~~~~~~~~~~~~~~~~p~~~y~ati~v~p~~~~gs~~t~~~~s~~~~~p~~~~~~~~  180 (214)
                      -+++++++ .+++.|+....+.                 + .....++.|+|.+ +||.++++..    ..+.   .+ .
T Consensus        90 g~v~e~~p-p~rl~~~~~~~~~-----------------~-~~~~v~~~l~~~~-~gT~l~~~~~----~~~~---~~-~  141 (191)
T 2k5g_A           90 HTLLRCEP-PRVLALTWGGGAG-----------------E-APSEVLFELSEAG-EQVRLVLTHT----RLAD---RA-A  141 (191)
T ss_dssp             EEEEEEET-TTEEEEECCCCSS-----------------S-SCCEEEEEEEECS-SSEEEEEEEE----CCCS---HH-H
T ss_pred             EEEEEecC-CCEEEEEeecCCC-----------------C-CCEEEEEEEEEcC-CCEEEEEEEe----cCCC---HH-H
Confidence            78999999 5788887644211                 1 2467788899876 5665554432    1232   12 2


Q ss_pred             HHHHHHHHHHHHHHHHHHHhhhh
Q 028067          181 CYFVEALIKCNLKSLADVSEHLA  203 (214)
Q Consensus       181 ~~~v~~~~~~gL~~L~~~le~~a  203 (214)
                      ...+..-....|+.|++.||...
T Consensus       142 ~~~~~~GW~~~L~~L~~~le~~~  164 (191)
T 2k5g_A          142 MLDVAGGWHAHLAVLAGKLAGQA  164 (191)
T ss_dssp             HHHHTTTTTTHHHHHHHHHHTSC
T ss_pred             HHHHHHhHHHHHHHHHHHHCCCC
Confidence            23445556778999999998754

>3eli_A AHSA1, AHA1 domain protein; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.80A {Silicibacter pomeroyi} SCOP: d.129.3.5

Probab=98.68  E-value=4e-07  Score=71.22  Aligned_cols=136  Identities=11%  Similarity=-0.028  Sum_probs=85.0

Q ss_pred             EEEEEeeeecCCHHHHHHHHhcCCCCCccCcc-ceEE---EEecCCCCCeEEEEEee--CCCCcceEEEEEEEEeCCCcE
Q 028067           39 CSSSLVKHIKAPVHLVWSLVRRFDQPQKYKPF-VSRC---IVQGDLQIGSVREVNVK--SGLPATTSTERLELLDDEEHI  112 (214)
Q Consensus        39 ve~sI~~~I~APae~VW~vi~Df~~l~~W~P~-V~s~---~veG~g~VGsvR~l~~~--~G~p~~~v~ErL~~~D~~~~~  112 (214)
                      +.-++  .|+||+++||++++|...+..|.+. --.+   ..+.+..+|..-.+.+.  +|.. ....-++++++| .++
T Consensus         4 i~~~r--~i~Ap~e~Vw~altdp~~~~~W~~~~~~~~~~~~~~~d~~~Gg~~~~~~~~~~G~~-~~~~g~v~e~~p-~~~   79 (152)
T 3eli_A            4 LRLER--EFAVAPEALFAWVSDGAKLLQWWGPEGLHVPADQHDLDFTRLGPWFSVMVNGEGQR-YKVSGQVTHVKP-PQS   79 (152)
T ss_dssp             EEEEE--EESSCHHHHHHHTTCHHHHHHHCSSTTCBCCTTSBCCCCSSSEEEEEEEECTTCCE-EEEEEEEEEEET-TTE
T ss_pred             EEEEE--EECCCHHHHHHHHcCHHHHhhccCCCCcccccceeEEcccCCcEEEEEEECCCCCE-EEEEEEEEEEcC-CCE
Confidence            44555  8999999999999999999999752 1111   12345557766555543  4531 247788999999 577


Q ss_pred             EEEEEEcCcccceeeeccccccccCCCcceeeEEEEEEEeecCCCcceEEEEEEEEeeCCCCCCHHHHHHHHHHHHHHHH
Q 028067          113 FGMRIVGGDHRLKIIWNFSNFISTSSSKLQNYSSIVTVHPEVIDGRPGTLVIESFVVDVPDGNTKDETCYFVEALIKCNL  192 (214)
Q Consensus       113 ~~Y~iv~g~~~~~~~~~~~~~~~~~~~p~~~y~ati~v~p~~~~gs~~t~~~~s~~~~~p~~~~~~~~~~~v~~~~~~gL  192 (214)
                      +.|+....+.+.              .+......++.+.|.+ +||.++++-.    ..+..    +....+..-....|
T Consensus        80 l~~~~~~~~~~~--------------~~~~~~~v~~~l~~~~-~gT~l~l~~~----~~~~~----~~~~~~~~GW~~~L  136 (152)
T 3eli_A           80 VGFTWGWHDDDD--------------RRGAESHVMFIVEPCA-KGARLILDHR----ELGDD----EMSLRHEEGWTSSL  136 (152)
T ss_dssp             EEEEEEEECTTS--------------CEEEEEEEEEECCBC---CEEEEEEEE----SCSCH----HHHHHHHHHHHHHH
T ss_pred             EEEEEeecCCCC--------------CCCCcEEEEEEEEECC-CCEEEEEEEc----cCCCH----HHHHHHHHHHHHHH
Confidence            888874321111              1224566788888876 5675554432    12321    22345566778889


Q ss_pred             HHHHHHHhh
Q 028067          193 KSLADVSEH  201 (214)
Q Consensus       193 ~~L~~~le~  201 (214)
                      +.|++.|+-
T Consensus       137 ~~L~~~l~~  145 (152)
T 3eli_A          137 RKLAAELAL  145 (152)
T ss_dssp             HHHHHHHHT
T ss_pred             HHHHHHHhh
Confidence            999988874

>3uid_A Putative uncharacterized protein; SRPBCC superfamily, beta sandwich, function, structural genomics, TB structural genomics conso TBSGC; 1.57A {Mycobacterium smegmatis} SCOP: d.129.3.0

Probab=98.53  E-value=1.4e-06  Score=70.04  Aligned_cols=147  Identities=15%  Similarity=0.129  Sum_probs=86.3

Q ss_pred             CCceEEEEEeeeecCCHHHHHHHHhcCCCCCccC-cc-ceEEEEecCCCCCeEEEEEe--eCCCCcceEEEEEEEEeCCC
Q 028067           35 HDHQCSSSLVKHIKAPVHLVWSLVRRFDQPQKYK-PF-VSRCIVQGDLQIGSVREVNV--KSGLPATTSTERLELLDDEE  110 (214)
Q Consensus        35 ~~~~ve~sI~~~I~APae~VW~vi~Df~~l~~W~-P~-V~s~~veG~g~VGsvR~l~~--~~G~p~~~v~ErL~~~D~~~  110 (214)
                      ....+.-+.  .|+||+++||+++.|...+..|. |. ......+.+..+|....+.+  .+|.. ....-++++++| .
T Consensus        11 ~~~~i~~~r--~i~Ap~e~Vw~a~Tdpe~l~~W~~p~~~~~~~~~~d~r~GG~~~~~~~~~~G~~-~~~~g~~~ev~p-~   86 (168)
T 3uid_A           11 DTLTLTITA--EFAAPVTRIWQIYADPRQLEKVWGPPSHPATVVDHDLRPGGRVTYFMTGPDGEK-YAGYWEITAVDE-P   86 (168)
T ss_dssp             TTTEEEEEE--EESSCHHHHHHHHHSHHHHHHHHCCTTSCCEEEEECCSTTCEEEEEEECTTSCE-EEEEEEEEEEET-T
T ss_pred             CCCEEEEEE--EEcCCHHHHHHHhCCHHHHhhEeCCCCeeeeEEEEcccCCcEEEEEEECCCCCE-EeeEEEEEEEeC-C
Confidence            445566666  99999999999999999998885 32 11112244544655544443  35531 246788999999 5


Q ss_pred             cEEEEEEEcCcccceeeeccccccccCCC-cceeeEEEEEEEeecCCCcceEEEEEEEEeeCCCCCCHHHHHH-HHHHHH
Q 028067          111 HIFGMRIVGGDHRLKIIWNFSNFISTSSS-KLQNYSSIVTVHPEVIDGRPGTLVIESFVVDVPDGNTKDETCY-FVEALI  188 (214)
Q Consensus       111 ~~~~Y~iv~g~~~~~~~~~~~~~~~~~~~-p~~~y~ati~v~p~~~~gs~~t~~~~s~~~~~p~~~~~~~~~~-~v~~~~  188 (214)
                      +++.|+..-.+...            .+. +...-..++.+.+.+ +||.++++.   .  .+.....+.+.. -+..=.
T Consensus        87 ~rlv~t~~~~~~~g------------~p~~~~~~s~vt~~l~~~~-~gT~lt~~~---~--~~~~~~~~~~~~~g~~~GW  148 (168)
T 3uid_A           87 HSFSFLDGFADEDF------------NPNTDLPVSTNVYTFTEHD-GGTRATYVG---T--YASAEALQQVLDMGVIEGA  148 (168)
T ss_dssp             TEEEEEEEEECTTS------------CBCSSCCCEEEEEEEEEET-TEEEEEEEE---E--CSCHHHHHHHHHTTHHHHH
T ss_pred             cEEEEEEeeccCCC------------CcCCCCCcEEEEEEEEECC-CCEEEEEEE---e--cCCHHHHHHHHHhcHHHHH
Confidence            77787763211000            000 112467889999986 677656552   1  222111111111 245566


Q ss_pred             HHHHHHHHHHHhhhh
Q 028067          189 KCNLKSLADVSEHLA  203 (214)
Q Consensus       189 ~~gL~~L~~~le~~a  203 (214)
                      ...|+.|+++|+...
T Consensus       149 ~~~L~~L~~~l~~~~  163 (168)
T 3uid_A          149 SSAINQIDALLTATH  163 (168)
T ss_dssp             HHHHHHHHHHTCSCC
T ss_pred             HHHHHHHHHHHHhhh
Confidence            778888888887653

>1x53_A Activator of 90 kDa heat shock protein ATPase homolog 1; AHA1, HSP90,DUF704, C-terminal domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.129.3.5

Probab=98.28  E-value=2.3e-06  Score=66.37  Aligned_cols=127  Identities=7%  Similarity=-0.085  Sum_probs=78.2

Q ss_pred             ceEEEEEeeeecCCHHHHHHHHhcCCCCCccCccceEEEEecCCCCCeEEEEEeeCCCCcceEEEEEEEEeCCCcEEEEE
Q 028067           37 HQCSSSLVKHIKAPVHLVWSLVRRFDQPQKYKPFVSRCIVQGDLQIGSVREVNVKSGLPATTSTERLELLDDEEHIFGMR  116 (214)
Q Consensus        37 ~~ve~sI~~~I~APae~VW~vi~Df~~l~~W~P~V~s~~veG~g~VGsvR~l~~~~G~p~~~v~ErL~~~D~~~~~~~Y~  116 (214)
                      ..++.++  .|+||+++||+++.|...+..|.+..  +  +.+..+|..-  ++.+|.    +.=++.+++| .+++.|+
T Consensus        11 ~~i~~~~--~i~ap~e~Vw~altdp~~~~~W~~~~--~--~~d~~~Gg~~--~~~~G~----~~g~v~e~~p-~~~l~~~   77 (145)
T 1x53_A           11 CKITLKE--TFLTSPEELYRVFTTQELVQAFTHAP--A--TLEADRGGKF--HMVDGN----VSGEFTDLVP-EKHIVMK   77 (145)
T ss_dssp             EEEEEEE--EESSCHHHHHHHTTCHHHHHHHSCSC--C--BCCCSTTCCC--BBTTTT----EECCEEEEET-TTEEEEE
T ss_pred             cEEEEEE--EECCCHHHHHHHhCCHHHHHHhcCCC--c--eEECCCCCEE--EEECCe----eEEEEEEEeC-CCEEEEE
Confidence            4566666  99999999999999999999997543  2  2333344432  233552    4456778998 5778877


Q ss_pred             EEcCcccceeeeccccccccCCCcceeeEEEEEEEeecCCCcceEEEEEEEEeeCCCCCCHHHHHHHHHHHHHH-HHHHH
Q 028067          117 IVGGDHRLKIIWNFSNFISTSSSKLQNYSSIVTVHPEVIDGRPGTLVIESFVVDVPDGNTKDETCYFVEALIKC-NLKSL  195 (214)
Q Consensus       117 iv~g~~~~~~~~~~~~~~~~~~~p~~~y~ati~v~p~~~~gs~~t~~~~s~~~~~p~~~~~~~~~~~v~~~~~~-gL~~L  195 (214)
                      ....+.+.                -.....++.++|.+ ++|.++++....    +.+    .. ..+..-... .|+.|
T Consensus        78 ~~~~~~~~----------------~~~~~v~~~l~~~~-~gT~l~~~~~~~----~~~----~~-~~~~~Gw~~~~l~~L  131 (145)
T 1x53_A           78 WRFKSWPE----------------GHFATITLTFIDKN-GETELCMEGRGI----PAP----EE-ERTRQGWQRYYFEGI  131 (145)
T ss_dssp             EEETTSCT----------------TCCEEEEEECCBCS-SCEEEEEEEEEE----EHH----HH-HHHHHTTHHHHHHHH
T ss_pred             EecCCCCC----------------CCcEEEEEEEEECC-CCEEEEEEEECC----CHH----HH-HHHHhchhHHHHHHH
Confidence            64322111                02356778888865 677666553222    211    12 233444454 68999


Q ss_pred             HHHHhhh
Q 028067          196 ADVSEHL  202 (214)
Q Consensus       196 ~~~le~~  202 (214)
                      ++.||.-
T Consensus       132 ~~~le~g  138 (145)
T 1x53_A          132 KQTFGYG  138 (145)
T ss_dssp             HHHTCCC
T ss_pred             HHHHhcC
Confidence            9988864

>4fpw_A CALU16; structural genomics, PSI-biology, northeast structural genom consortium, NESG, unknown function; 2.50A {Micromonospora echinospora} PDB: 2luz_A

Probab=98.27  E-value=3.2e-06  Score=69.45  Aligned_cols=126  Identities=14%  Similarity=0.061  Sum_probs=80.9

Q ss_pred             CCCceEEEEEeeeecCCHHHHHHHHhcCCCCCccCccceEEEEecCCCCCeEEEEEeeCCCCcceEEEEEEEEeCCCcEE
Q 028067           34 VHDHQCSSSLVKHIKAPVHLVWSLVRRFDQPQKYKPFVSRCIVQGDLQIGSVREVNVKSGLPATTSTERLELLDDEEHIF  113 (214)
Q Consensus        34 ~~~~~ve~sI~~~I~APae~VW~vi~Df~~l~~W~P~V~s~~veG~g~VGsvR~l~~~~G~p~~~v~ErL~~~D~~~~~~  113 (214)
                      +....+..++  .|+||+++||+++.|...+..|.+..     +++..+|..-.+...       ..-++++++| .+++
T Consensus        18 ~~~~~i~~~r--~i~Appe~Vw~alTdpe~l~~W~~p~-----~~d~~~Gg~~~~~~~-------~~g~v~e~~p-p~rl   82 (181)
T 4fpw_A           18 GEARSIIIRQ--RYDAPVDEVWSACTDPNRINRWFIEP-----KGDLREGGNFALQGN-------ASGDILRCEP-PRRL   82 (181)
T ss_dssp             EEEEEEEEEE--EESSCHHHHHHHHHCHHHHHHHSCCE-----ESCCSTTCEEEESSS-------CEEECCEEET-TTEE
T ss_pred             CCCceEEEEE--EECCCHHHHHHHHcChHHHhhccCCC-----ccCCCCCCEEEEEec-------CCEEEEEEcC-CcEE
Confidence            3345566666  99999999999999999999997542     345556766444321       1245777998 5788


Q ss_pred             EEEEEcCcccceeeeccccccccCCCcceeeEEEEEEEeecCCCcceEEEEEEEEeeCCCCCCHHHHHHHHHHHHHHHHH
Q 028067          114 GMRIVGGDHRLKIIWNFSNFISTSSSKLQNYSSIVTVHPEVIDGRPGTLVIESFVVDVPDGNTKDETCYFVEALIKCNLK  193 (214)
Q Consensus       114 ~Y~iv~g~~~~~~~~~~~~~~~~~~~p~~~y~ati~v~p~~~~gs~~t~~~~s~~~~~p~~~~~~~~~~~v~~~~~~gL~  193 (214)
                      .|+...++.                   .....++.|.|.+ ++|.++++...    .++    +.. ..+..=....|+
T Consensus        83 ~~tw~~~~~-------------------~~s~vt~~l~~~~-~gT~Ltl~~~~----~~~----e~~-~~~~~GW~~~L~  133 (181)
T 4fpw_A           83 TISWVYEGK-------------------PDSEVELRLSEEG-DGTLLELEHAT----TSE----QML-VEVGVGWEMALD  133 (181)
T ss_dssp             EEEEBCTTS-------------------CCEEEEEEEEEET-TEEEEEEEEEE----SCH----HHH-HHHHHHHHHHHH
T ss_pred             EEEEEcCCC-------------------CcEEEEEEEEECC-CcEEEEEEEEc----CCH----HHH-HHHHHhHHHHHH
Confidence            888753211                   1346788999965 67755555432    222    222 344555688899


Q ss_pred             HHHHHHhhhh
Q 028067          194 SLADVSEHLA  203 (214)
Q Consensus       194 ~L~~~le~~a  203 (214)
                      .|+++|+...
T Consensus       134 ~L~~~L~G~~  143 (181)
T 4fpw_A          134 FLGMFIRGDL  143 (181)
T ss_dssp             HHHHHC----
T ss_pred             HHHHHhCCCC
Confidence            9999997654

>3ni8_A PFC0360W protein; heat shock, malaria, ATPase, structural genomics consortium, unknown function; 2.50A {Plasmodium falciparum}

Probab=98.25  E-value=9e-06  Score=64.98  Aligned_cols=135  Identities=11%  Similarity=0.016  Sum_probs=78.4

Q ss_pred             CCceEEEEEeeeecCCHHHHHHHHhcCCCCCccCccceEEEEecCCCCCeEEEEEeeCCCCcceEEEEEEEEeCCCcEEE
Q 028067           35 HDHQCSSSLVKHIKAPVHLVWSLVRRFDQPQKYKPFVSRCIVQGDLQIGSVREVNVKSGLPATTSTERLELLDDEEHIFG  114 (214)
Q Consensus        35 ~~~~ve~sI~~~I~APae~VW~vi~Df~~l~~W~P~V~s~~veG~g~VGsvR~l~~~~G~p~~~v~ErL~~~D~~~~~~~  114 (214)
                      ....+.-++  .|+||+++||+++.|...+..|.+. ..+++  +..+|..-.  +..|    .+.=++++++|. +++.
T Consensus        17 ~~~~i~~~r--~~~ap~e~Vw~A~Tdpe~l~~W~~g-~~~~~--d~~~GG~~~--~~~G----~~~g~v~ev~p~-~rlv   84 (158)
T 3ni8_A           17 QGMSFEITE--EYYVPPEVLFNAFTDAYTLTRLSRG-SLAEV--DLKVGGKFS--LFSG----SILGEFTEITKP-HKIV   84 (158)
T ss_dssp             -CCCEEEEE--EESSCHHHHHHHHHCHHHHHHHTTT-SCCEE--CCSTTCEEE--ETTT----TEEEEEEEEETT-TEEE
T ss_pred             CCceEEEEE--EECCCHHHHHHHhcCHHHHHhhcCC-CccEE--EccCCCEEE--EecC----CEEEEEEEEeCC-cEEE
Confidence            345666666  9999999999999999999999872 12222  333554433  3345    245678889984 6677


Q ss_pred             EEEEcCcccceeeeccccccccCCCcceeeEEEEEEEeecCCCcceEEEEEEEEeeCCCCCC--HHHHHHHHHHHHHH-H
Q 028067          115 MRIVGGDHRLKIIWNFSNFISTSSSKLQNYSSIVTVHPEVIDGRPGTLVIESFVVDVPDGNT--KDETCYFVEALIKC-N  191 (214)
Q Consensus       115 Y~iv~g~~~~~~~~~~~~~~~~~~~p~~~y~ati~v~p~~~~gs~~t~~~~s~~~~~p~~~~--~~~~~~~v~~~~~~-g  191 (214)
                      |+.--.+.+.                -..-..++.+.|..+++|.++++...    .|....  .+.+...+..=... -
T Consensus        85 ~tw~~~~~~~----------------~~~s~vt~~l~~~~~~~T~ltl~~~g----~~~~~~~~~~~~~~~~~~GW~~~~  144 (158)
T 3ni8_A           85 EKWKFRDWNE----------------CDYSTVTVEFISVKENHTKLKLTHNN----IPASNKYNEGGVLERCKNGWTQNF  144 (158)
T ss_dssp             EEEEETTSCS----------------SCCEEEEEEEEEEETTEEEEEEEEEC----CCSSCTTCCCCHHHHHHHHHHHTH
T ss_pred             EEEEecCCCC----------------CCcEEEEEEEEecCCCCEEEEEEEEc----cCchhhhccchhHHHHHhChhHHH
Confidence            6543221111                02346788888854466755554431    232211  01112233444555 3


Q ss_pred             HHHHHHHHhh
Q 028067          192 LKSLADVSEH  201 (214)
Q Consensus       192 L~~L~~~le~  201 (214)
                      |++|++.||.
T Consensus       145 L~~Lk~~Le~  154 (158)
T 3ni8_A          145 LHNIEVILGY  154 (158)
T ss_dssp             HHHHHHTSCC
T ss_pred             HHHHHHHhCc
Confidence            8888888763

>2luz_A CALU16; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Micromonospora echinospora}

Probab=98.19  E-value=3.3e-05  Score=64.14  Aligned_cols=120  Identities=15%  Similarity=0.101  Sum_probs=78.2

Q ss_pred             EEeeeecCCHHHHHHHHhcCCCCCccCccceEEEEecCCCCCeEEEEEeeCCCCcceEEEEEEEEeCCCcEEEEEEEcCc
Q 028067           42 SLVKHIKAPVHLVWSLVRRFDQPQKYKPFVSRCIVQGDLQIGSVREVNVKSGLPATTSTERLELLDDEEHIFGMRIVGGD  121 (214)
Q Consensus        42 sI~~~I~APae~VW~vi~Df~~l~~W~P~V~s~~veG~g~VGsvR~l~~~~G~p~~~v~ErL~~~D~~~~~~~Y~iv~g~  121 (214)
                      .|+++++||+++||+++.|...+..|.+.   +  +++..+|....+.   +    ...-++++++| .+++.|+....+
T Consensus        35 ~i~R~f~Ap~e~VW~AlTdpe~l~~W~~~---~--~~d~r~GG~~~~~---~----~~~g~v~ev~p-p~rL~~tw~~~~  101 (192)
T 2luz_A           35 IIRQRYDAPVDEVWSACTDPNRINRWFIE---P--KGDLREGGNFALQ---G----NASGDILRCEP-PRRLTISWVYEG  101 (192)
T ss_dssp             EEEEEESSCHHHHHHHHHCHHHHTTTSCC---E--EECCSTTSEEEET---T----SEEEEEEEEET-TTEEEEEEEESS
T ss_pred             EEEEEeCCCHHHHHHHHcCHHHHheeeCC---C--cccCccCcEEEee---c----cccceEEEEec-CeeEEEEEeecC
Confidence            35568899999999999999999999863   2  3454566544332   2    13346778998 577888864322


Q ss_pred             ccceeeeccccccccCCCcceeeEEEEEEEeecCCCcceEEEEEEEEeeCCCCCCHHHHHHHHHHHHHHHHHHHHHHHhh
Q 028067          122 HRLKIIWNFSNFISTSSSKLQNYSSIVTVHPEVIDGRPGTLVIESFVVDVPDGNTKDETCYFVEALIKCNLKSLADVSEH  201 (214)
Q Consensus       122 ~~~~~~~~~~~~~~~~~~p~~~y~ati~v~p~~~~gs~~t~~~~s~~~~~p~~~~~~~~~~~v~~~~~~gL~~L~~~le~  201 (214)
                      .                   ..-..++.|.|.+ +||.++++-.  .  .+    .+.+... ..=....|+.|+.+|+.
T Consensus       102 ~-------------------~~~~vt~~L~~~g-~gT~Ltl~h~--~--~~----~~~~~~~-~~GW~~~Ld~L~~~L~g  152 (192)
T 2luz_A          102 K-------------------PDSEVELRLSEEG-DGTLLELEHA--T--TS----EQMLVEV-GVGWEMALDFLGMFIRG  152 (192)
T ss_dssp             S-------------------CEEEEEEEEEEET-TEEEEEEEEE--E--SC----HHHHHHH-HHHHHHHHHHHHHHHTT
T ss_pred             C-------------------CCceEEEEEEEcC-CcEEEEEEEE--C--CC----HHHHHHH-hccHHHHHHHHHHHhCC
Confidence            1                   2345688899987 6775555432  1  22    2233333 33357889999999986


Q ss_pred             hh
Q 028067          202 LA  203 (214)
Q Consensus       202 ~a  203 (214)
                      ..
T Consensus       153 ~~  154 (192)
T 2luz_A          153 DL  154 (192)
T ss_dssp             CC
T ss_pred             CC
Confidence            43

>1zxf_A CALC; SELF-sacrificing resistance protein, structural genomics, PSI, protein structure initiative; NMR {Micromonospora echinospora} SCOP: d.129.3.5 PDB: 2gkc_A* 2gkd_A 2l65_A*

Probab=98.13  E-value=9.9e-06  Score=64.01  Aligned_cols=140  Identities=9%  Similarity=-0.063  Sum_probs=77.6

Q ss_pred             ceEEEEEeeeecCCHHHHHHHHhcCCCCCccCc-cc------eEEEEecCCCCCeEEEEEeeCCCCcceEEEEEEEEeCC
Q 028067           37 HQCSSSLVKHIKAPVHLVWSLVRRFDQPQKYKP-FV------SRCIVQGDLQIGSVREVNVKSGLPATTSTERLELLDDE  109 (214)
Q Consensus        37 ~~ve~sI~~~I~APae~VW~vi~Df~~l~~W~P-~V------~s~~veG~g~VGsvR~l~~~~G~p~~~v~ErL~~~D~~  109 (214)
                      ..+..++  .|+||+++||++++|  .+..|.+ ..      ..++++ .  +|..-.+...+|...  ..=++.++|| 
T Consensus         4 ~~i~~~r--~~~Ap~e~Vw~A~Td--~l~~W~~p~~~~~~~~~~~~~d-r--~GG~~~~~~~~G~~~--~~g~v~ev~p-   73 (155)
T 1zxf_A            4 PFVRHSV--TVKADRKTAFKTFLE--GFPEWWPNNFRTTKVGAPLGVD-K--KGGRWYEIDEQGEEH--TFGLIRKVDE-   73 (155)
T ss_dssp             SCEEEEE--EESSHHHHHHHHHTT--CSSSSSSGGGSTTTTCSSCEEE-T--TTTEEECCCTTTSCC--CCEEEEEEET-
T ss_pred             ceEEEEE--EEeCCHHHHHHHHHh--hHHhhcCCCccccCCCceEEEE-C--CCCEEEEECCCCCeE--eEEEEEEECC-
Confidence            4566666  899999999999999  3788873 32      234445 2  333323333355321  1236778998 


Q ss_pred             CcEEEEEEEcCcccceeeeccccccccCCCcceeeEEEEEEEeecCCCcceEEEEEEEEeeCCCC-C-CHHHHHHHHHHH
Q 028067          110 EHIFGMRIVGGDHRLKIIWNFSNFISTSSSKLQNYSSIVTVHPEVIDGRPGTLVIESFVVDVPDG-N-TKDETCYFVEAL  187 (214)
Q Consensus       110 ~~~~~Y~iv~g~~~~~~~~~~~~~~~~~~~p~~~y~ati~v~p~~~~gs~~t~~~~s~~~~~p~~-~-~~~~~~~~v~~~  187 (214)
                      .+++.|+---.+. .            .+.|-..-..|++++|.++++|.++++-..    .+.. . ....+...+..=
T Consensus        74 p~rl~~tw~~~~~-~------------~~~~~~~s~vt~~l~~~~~g~T~ltl~~~~----~~~~~~~~~~~~~~~~~~G  136 (155)
T 1zxf_A           74 PDTLVIGWRLNGF-G------------RIDPDNSSEFTVTFVADGQKKTRVDVEHTH----FDRMGTKHAKRVRNGMDKG  136 (155)
T ss_dssp             TTEEEEECCCSSS-S------------SCCCSSCCCEEEEEEEETTTEEEEEEEECS----STTSCHHHHHHHHHHHTTT
T ss_pred             CCEEEEEEecCCC-C------------CCCCCCcEEEEEEEEECCCCcEEEEEEEec----ccccccchhHHHHHHHHhh
Confidence            5778887422110 0            011212356789999987433655544321    1211 1 112232233333


Q ss_pred             HHHHHHHHHHHHhhhh
Q 028067          188 IKCNLKSLADVSEHLA  203 (214)
Q Consensus       188 ~~~gL~~L~~~le~~a  203 (214)
                      ....|+.|+++|++..
T Consensus       137 W~~~l~~L~~~l~~~~  152 (155)
T 1zxf_A          137 WPTILQSFQDKIDEEG  152 (155)
T ss_dssp             HHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhhhh
Confidence            5788899998887654

>3qsz_A STAR-related lipid transfer protein; structural genomics, PSI-biology; 2.39A {Xanthomonas axonopodis PV}

Probab=98.00  E-value=0.00085  Score=53.86  Aligned_cols=150  Identities=12%  Similarity=0.032  Sum_probs=85.5

Q ss_pred             ceEEEEEeeeecCCHHHHHHHHhcCCCCCccCccceEEEE-ecCCCCCeE-EEEEeeCCCCc---ceEEEEEEEEeCCC-
Q 028067           37 HQCSSSLVKHIKAPVHLVWSLVRRFDQPQKYKPFVSRCIV-QGDLQIGSV-REVNVKSGLPA---TTSTERLELLDDEE-  110 (214)
Q Consensus        37 ~~ve~sI~~~I~APae~VW~vi~Df~~l~~W~P~V~s~~v-eG~g~VGsv-R~l~~~~G~p~---~~v~ErL~~~D~~~-  110 (214)
                      ..+..+.  .|++|++++++++.|....+.|.|.+.++++ +-+  .+.. -.+.+....|.   ..+.-+-...++++ 
T Consensus        27 ~~~k~~~--~v~~s~~~v~~~l~D~~~~~~W~~~~~~~~vle~~--~~~~i~y~~~~~p~p~~~RD~v~~~~~~~~~~g~  102 (189)
T 3qsz_A           27 REFRGEV--RLKAAADDVVKVLRDANAFRQWMPDVAASELLKAT--DTEQYHYLDNSAPWPVSNRDGVYHFTYEKAGDGA  102 (189)
T ss_dssp             CEEEEEE--EESSCHHHHHHHHHCGGGGGGTSTTEEEEEEEEEC--SSEEEEEEEECCSSSCCCEEEEEEEEEEECTTSC
T ss_pred             EEEEEEE--EEECCHHHHHHHHHhHHHhhhHHHhcCEEEEEeec--CCceEEEEEeecCCCcCCcceEEEEEEEECCCCe
Confidence            4466666  7899999999999999999999999999974 432  2322 22333222121   12222222233332 


Q ss_pred             cEEEEEEEcCcccceeeeccccccccCCCcceeeEEEEEEEeecCCCcceEEEEEEEEeeCCCCCCHHHHHHHHHHHHHH
Q 028067          111 HIFGMRIVGGDHRLKIIWNFSNFISTSSSKLQNYSSIVTVHPEVIDGRPGTLVIESFVVDVPDGNTKDETCYFVEALIKC  190 (214)
Q Consensus       111 ~~~~Y~iv~g~~~~~~~~~~~~~~~~~~~p~~~y~ati~v~p~~~~gs~~t~~~~s~~~~~p~~~~~~~~~~~v~~~~~~  190 (214)
                      ..+.++......|..          .+-.-.+.+.+.+.++| ++++|.+++...   .++--....-.+..++......
T Consensus       103 ~~i~~~~~~~~~P~~----------~~~VR~~~~~~~~~i~p-~~~~t~vt~~~~---~dp~G~iP~~lvn~~~~~~~~~  168 (189)
T 3qsz_A          103 ITVRVEAVPDYLPLR----------KGKVRIPRAKGQWTLVP-DADGVDVTYQMH---ASPGGSIPSWLANQTVVETPFG  168 (189)
T ss_dssp             EEEEEEECTTSSCCC----------TTSEECCCEEEEEEEEE-CSSSEEEEEEEE---ECSCSSSCHHHHHHTTTHHHHH
T ss_pred             EEEEEEcCCCccCCC----------CCeEEeeEeeEEEEEEE-CCCeEEEEEEEE---eCCCCCCCHHHHHHHHHHHHHH
Confidence            222333211100000          00011467889999999 766665555443   3543333455566667778888


Q ss_pred             HHHHHHHHHhhhhh
Q 028067          191 NLKSLADVSEHLAV  204 (214)
Q Consensus       191 gL~~L~~~le~~a~  204 (214)
                      .|++|++.+++...
T Consensus       169 ~l~~L~k~~~~~~~  182 (189)
T 3qsz_A          169 TLKALRSHLRQAHL  182 (189)
T ss_dssp             HHHHHHHHHTC---
T ss_pred             HHHHHHHHhhhchh
Confidence            89999999988654

>2lio_A Uncharacterized protein; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Bacteroides fragilis}

Probab=97.92  E-value=0.00038  Score=54.92  Aligned_cols=127  Identities=9%  Similarity=0.116  Sum_probs=84.4

Q ss_pred             CceEEEEEeeeecCCH-HHHHHHHhcCCCCCccCccceEEEEecCCCCCeEEEEEeeCCCCcceEEEEEEEEeCCCcEEE
Q 028067           36 DHQCSSSLVKHIKAPV-HLVWSLVRRFDQPQKYKPFVSRCIVQGDLQIGSVREVNVKSGLPATTSTERLELLDDEEHIFG  114 (214)
Q Consensus        36 ~~~ve~sI~~~I~APa-e~VW~vi~Df~~l~~W~P~V~s~~veG~g~VGsvR~l~~~~G~p~~~v~ErL~~~D~~~~~~~  114 (214)
                      ..+++.++  .|+||+ ++||++|+...++..|...-  +...|     ..-.+...+  + ....=+|+++++ .+.++
T Consensus         3 k~~i~~e~--~i~A~~~~~VW~~IStPegL~~Wfad~--v~~~g-----~~~~F~w~~--~-~~~~~~v~~~~~-~~~i~   69 (136)
T 2lio_A            3 KEKIHLEY--LLNATSKNILWSAISTPTGLEDWFADK--VVSDD-----KTVTFCWGK--T-EQRQAGIVAIRA-YSFIR   69 (136)
T ss_dssp             CEEEEEEE--EECTTSCTHHHHGGGSHHHHTTTSSSE--EEEET-----TEEEEESSS--S-SEEEEEEEEEET-TTEEE
T ss_pred             CCcEEEEE--EecCChHHHHHHHhCChhhhhcccCCC--CcccC-----ceEEEEeCC--C-CcEeEEEEEEcC-CCEEE
Confidence            46788999  999999 99999999999999998642  22223     233344433  2 245678899999 58889


Q ss_pred             EEEEcCcccceeeeccccccccCCCcceeeEEEEEEEeecCCCcceEEEEEEEEeeCCCCCCHHHHHHHHHHHHHHHHHH
Q 028067          115 MRIVGGDHRLKIIWNFSNFISTSSSKLQNYSSIVTVHPEVIDGRPGTLVIESFVVDVPDGNTKDETCYFVEALIKCNLKS  194 (214)
Q Consensus       115 Y~iv~g~~~~~~~~~~~~~~~~~~~p~~~y~ati~v~p~~~~gs~~t~~~~s~~~~~p~~~~~~~~~~~v~~~~~~gL~~  194 (214)
                      |+-...+                   -.++..++++.+.+..+ ..++.+..+.    +.   +..+. +......-|+.
T Consensus        70 FrW~~~~-------------------~~~~~~e~~l~~~~~t~-~~~L~vtdFa----~~---~~~e~-~~~gW~~~l~~  121 (136)
T 2lio_A           70 FHWLDDE-------------------NERDYFEIKMSYNELTG-DYVLEITDFS----EA---DEADD-LKELWDSQVSK  121 (136)
T ss_dssp             EEESSSS-------------------SSSCEEEEEEEECTTTS-CEEEEEEEEE----CH---HHHHH-HHHHHHHHHHH
T ss_pred             EEccCCC-------------------CCceEEEEEEEecCCCC-cEEEEEecCC----Cc---cchhH-HHhhHHHHHHH
Confidence            9985521                   14577888888765322 1355544221    11   12333 57777888899


Q ss_pred             HHHHHhhhh
Q 028067          195 LADVSEHLA  203 (214)
Q Consensus       195 L~~~le~~a  203 (214)
                      |++.++.+.
T Consensus       122 Lk~~lg~~~  130 (136)
T 2lio_A          122 LRRTCGFLE  130 (136)
T ss_dssp             HHHHTSCCC
T ss_pred             HHHHhhhhc
Confidence            999988764

>3oh8_A Nucleoside-diphosphate sugar epimerase (SULA FAMI; DUF1731_C, northeast structural genomics consortium, NESG, C PSI-biology; 2.00A {Corynebacterium glutamicum}

Probab=97.75  E-value=0.00013  Score=67.58  Aligned_cols=102  Identities=17%  Similarity=0.130  Sum_probs=75.4

Q ss_pred             eEEEEEeeeecCCHHHHHHHHhcCCCCCccCccceEEEEe---cCCCCCeEEEEEeeCCCCcceEEEEE--EEEeCCCcE
Q 028067           38 QCSSSLVKHIKAPVHLVWSLVRRFDQPQKYKPFVSRCIVQ---GDLQIGSVREVNVKSGLPATTSTERL--ELLDDEEHI  112 (214)
Q Consensus        38 ~ve~sI~~~I~APae~VW~vi~Df~~l~~W~P~V~s~~ve---G~g~VGsvR~l~~~~G~p~~~v~ErL--~~~D~~~~~  112 (214)
                      .++.+.  .|++|+++||+.+++++++++|.|....+++.   |...+|++- +.+..|.   ...-++  +++|+ .+.
T Consensus         2 ~~~~~~--~i~~p~~~v~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~G~~~-~~~~~~~---~w~~~~~~t~~~~-~~~   74 (516)
T 3oh8_A            2 SLTTSH--FIPFPREMVWDWHTRKGAVARLTPPFIPLNPITQAERLADGTTI-FSLPAGL---KWVARHDLSGFLN-GSR   74 (516)
T ss_dssp             CEEEEE--EESSCHHHHHHHHHSTTHHHHHSCTTSSCEECSCCSCSSSCEEE-EECSTTC---EEEEEECGGGCBT-TTE
T ss_pred             eEEEEE--EccCCHHHHHHHhcCcchHHHhCCCCCceEEecCCCCCcCCeEE-EecCCCc---EEEEEEccccccC-CCe
Confidence            366777  89999999999999999999999877777652   344688777 7776553   455667  88998 588


Q ss_pred             EEEEEEcCcccceeeeccccccccCCCcceeeEEEEEEEeecCCCcceEEE
Q 028067          113 FGMRIVGGDHRLKIIWNFSNFISTSSSKLQNYSSIVTVHPEVIDGRPGTLV  163 (214)
Q Consensus       113 ~~Y~iv~g~~~~~~~~~~~~~~~~~~~p~~~y~ati~v~p~~~~gs~~t~~  163 (214)
                      |......|+.+.                +..+.-+-.+.+.+ +||.++-.
T Consensus        75 F~d~~~~gp~~~----------------~~~w~h~h~f~~~~-~gt~~~d~  108 (516)
T 3oh8_A           75 FTDVCLTAPVKA----------------LANWRHVHNFVDQD-GGTLITDS  108 (516)
T ss_dssp             EEEECCSCSSGG----------------GSSCEEEEEEEEET-TEEEEEEE
T ss_pred             EEEEeccCcccc----------------eeeeEEEEEEEEcC-CCcEEEEE
Confidence            999888763220                57888888888876 45533333

>1ln1_A PC-TP, phosphatidylcholine transfer protein; start domain, lipid binding protein; HET: DLP; 2.40A {Homo sapiens} SCOP: d.129.3.2 PDB: 1ln2_A* 1ln3_A*

Probab=97.51  E-value=0.0066  Score=49.31  Aligned_cols=148  Identities=10%  Similarity=0.024  Sum_probs=83.7

Q ss_pred             eEEEEEeeee-cCCHHHHHHHHhcCCCCCccCccceEEEE-ecCCCCCeEEEEEeeCCCCcc---eEE-EEEEEEeCCCc
Q 028067           38 QCSSSLVKHI-KAPVHLVWSLVRRFDQPQKYKPFVSRCIV-QGDLQIGSVREVNVKSGLPAT---TST-ERLELLDDEEH  111 (214)
Q Consensus        38 ~ve~sI~~~I-~APae~VW~vi~Df~~l~~W~P~V~s~~v-eG~g~VGsvR~l~~~~G~p~~---~v~-ErL~~~D~~~~  111 (214)
                      .+....  +| ++|+++|++++.|....+.|.+.+.++++ +-++  ..+.++.+....|..   .+. .....+++.+.
T Consensus        53 ~~k~~~--~i~~~~~~~v~~~l~d~~~r~~Wd~~~~~~~vle~~~--~~i~~~~~~~p~p~~~RD~v~~~~~~~~~~~g~  128 (214)
T 1ln1_A           53 EYKVFG--VLEDCSPTLLADIYMDSDYRKQWDQYVKELYEQECNG--ETVVYWEVKYPFPMSNRDYVYLRQRRDLDMEGR  128 (214)
T ss_dssp             EEEEEE--EETTSCHHHHHHHHHCHHHHHHHCTTEEEEEEEEETT--EEEEEEEECCCTTSCCEEEEEEEEEEEECSTTC
T ss_pred             EEEEEE--EECCCCHHHHHHHHcCHHHHHHHHHHHhhEEEeccCC--CEEEEEEEEcCCCCCCceEEEEEEEEecccCCC
Confidence            445555  88 59999999999999888999999999974 4332  334444444222221   121 12223443332


Q ss_pred             EE----EEEEEcCcccceeeeccccccccCCCcceeeEEEEEEEeecCCCcceEEEEEEEEeeCCCCCCHHHHHHHHHHH
Q 028067          112 IF----GMRIVGGDHRLKIIWNFSNFISTSSSKLQNYSSIVTVHPEVIDGRPGTLVIESFVVDVPDGNTKDETCYFVEAL  187 (214)
Q Consensus       112 ~~----~Y~iv~g~~~~~~~~~~~~~~~~~~~p~~~y~ati~v~p~~~~gs~~t~~~~s~~~~~p~~~~~~~~~~~v~~~  187 (214)
                      .+    ..++...+.+.          ..+-.-...|.+.+.++|.++++|.+++...   .|+--....-.+..++...
T Consensus       129 ~~~~i~~~Sv~~p~~P~----------~~~~VR~~~~~~~~~i~p~~~~~t~v~~~~~---~Dp~G~iP~~l~n~~~~~~  195 (214)
T 1ln1_A          129 KIHVILARSTSMPQLGE----------RSGVIRVKQYKQSLAIESDGKKGSKVFMYYF---DNPGGQIPSWLINWAAKNG  195 (214)
T ss_dssp             CEEEEEEEECCBTTBCC----------CTTSEEECCEEEEEEEEECSSSSEEEEEEEE---ECCSSCCCHHHHHHHHHTH
T ss_pred             eEEEEEEecccCCCCCC----------CCCcEEEEEEEEEEEEecCCCCceEEEEEEE---ECCCCcccHHHHHHHHHHH
Confidence            11    11221111110          0000114678888999998766665554443   3543223344556666777


Q ss_pred             HHHHHHHHHHHHhhh
Q 028067          188 IKCNLKSLADVSEHL  202 (214)
Q Consensus       188 ~~~gL~~L~~~le~~  202 (214)
                      ....|+.|++.+++.
T Consensus       196 ~~~~l~~l~k~~~~y  210 (214)
T 1ln1_A          196 VPNFLKDMARACQNY  210 (214)
T ss_dssp             HHHHHHHHHHHHHTC
T ss_pred             hHHHHHHHHHHHHhc
Confidence            777788888888753

>2ffs_A Hypothetical protein PA1206; 7-stranded beta sheet, C-terminal helix, structural genomics protein structure initiative; HET: MSE; 2.50A {Pseudomonas aeruginosa} SCOP: d.129.3.7

Probab=95.71  E-value=0.49  Score=38.06  Aligned_cols=61  Identities=11%  Similarity=0.028  Sum_probs=45.2

Q ss_pred             HHHHHHHHhc-CCCCCccCccceEEEE-e-cCCCCCeEEEEEeeCCCCcceEEEEEEEEeCCCcEEEEEEEc
Q 028067           51 VHLVWSLVRR-FDQPQKYKPFVSRCIV-Q-GDLQIGSVREVNVKSGLPATTSTERLELLDDEEHIFGMRIVG  119 (214)
Q Consensus        51 ae~VW~vi~D-f~~l~~W~P~V~s~~v-e-G~g~VGsvR~l~~~~G~p~~~v~ErL~~~D~~~~~~~Y~iv~  119 (214)
                      .+++|.-|-. -.+...+.|.+.+|++ + ++  -.-.|.++++.+    .++|+++.. + ..++.|.+..
T Consensus        22 r~QlW~GL~~kar~p~~Fvp~i~~c~Vlse~~--~~~~R~l~fg~~----~i~e~vtl~-~-~~~v~f~~~~   85 (157)
T 2ffs_A           22 RLQLWEGLVCRAREPQYFVVGLERFEILVDDG--DRLHRRLYLPGL----VVEDEVVLK-A-PDSAHYSIKP   85 (157)
T ss_dssp             HHHHHHHHHHHHHCGGGTCTTCCEEEEEEECS--SEEEEEEEETTE----EEEEEEEEE-T-TTEEEEEECC
T ss_pred             HHHHHHHHHHHhcChhhcccccCeEEEEecCC--CeEEEEEEECCC----ccceEEEEc-C-CcEEEEEccc
Confidence            5799998854 5556789999999986 3 43  255688999655    688988754 5 3678998866

>1em2_A MLN64 protein; beta barrel, lipid binding protein; HET: TAR; 2.20A {Homo sapiens} SCOP: d.129.3.2

Probab=93.77  E-value=2.3  Score=34.63  Aligned_cols=143  Identities=13%  Similarity=0.018  Sum_probs=74.2

Q ss_pred             eecCCHHHHH-HHHhcCCCCCccCccceEEEE-e--cCCCCCeEEEEEeeC--CCCc---ceEEEEEEEEeCCCcEEEEE
Q 028067           46 HIKAPVHLVW-SLVRRFDQPQKYKPFVSRCIV-Q--GDLQIGSVREVNVKS--GLPA---TTSTERLELLDDEEHIFGMR  116 (214)
Q Consensus        46 ~I~APae~VW-~vi~Df~~l~~W~P~V~s~~v-e--G~g~VGsvR~l~~~~--G~p~---~~v~ErL~~~D~~~~~~~Y~  116 (214)
                      .+++|+++|+ .++.|....+.|.+.+.++++ +  .++  -.+.+.....  +.|.   -.+.-|-...++....+..+
T Consensus        73 ~v~~~~~~v~~~~~~d~~~r~~Wd~~~~~~~vle~~~~~--t~I~~~~~~p~~~~~~~~RDfv~~r~~~~~~~~~vi~~~  150 (229)
T 1em2_A           73 FLPCPAELVYQEVILQPERMVLWNKTVTACQILQRVEDN--TLISYDVSAGAAGGVVSPRDFVNVRRIERRRDRYLSSGI  150 (229)
T ss_dssp             EESSCHHHHHHHTTTCHHHHTTTCTTEEEEEEEEEETTT--EEEEEEEECCBTTTTBCCEEEEEEEEEEECSSEEEEEEE
T ss_pred             EecCCHHHHHHHHHhCccchhhcccccceEEEEEecCCC--eEEEEEEecCcCCCCcCCCeeEEEEEEEEcCCEEEEEEe
Confidence            6799999999 888999888999999999974 4  222  1232222211  1221   12222222233322222221


Q ss_pred             EEcCcccceeeeccccccccCCCcceeeEEEEEEEeecC--CCcceEEEEEEEEeeCCCC-CCHHHHHHHHHHHHHHHHH
Q 028067          117 IVGGDHRLKIIWNFSNFISTSSSKLQNYSSIVTVHPEVI--DGRPGTLVIESFVVDVPDG-NTKDETCYFVEALIKCNLK  193 (214)
Q Consensus       117 iv~g~~~~~~~~~~~~~~~~~~~p~~~y~ati~v~p~~~--~gs~~t~~~~s~~~~~p~~-~~~~~~~~~v~~~~~~gL~  193 (214)
                      =+  +++..     +  -..+-.-...+.+-+.+.|..+  +.|.+++..   ..| |.| .....+..++....-.-++
T Consensus       151 Sv--~~~~~-----P--~~~~~VR~~~~~~g~~i~p~~~~~~~t~vt~~~---~~D-p~G~iP~~l~n~~~~~~~~~~~~  217 (229)
T 1em2_A          151 AT--SHSAK-----P--PTHKYVRGENGPGGMIVLKSASNPRVCTFVWIL---NTD-LKGRLPRYLIHQSLAATMFEFAF  217 (229)
T ss_dssp             EC--CCTTS-----C--CCTTSEECEECSEEEEEEECSSCTTCEEEEEEE---CEE-CCSSSCHHHHHHHHHHHHHHHHH
T ss_pred             cc--cCCCC-----C--CCCCCEeeeecccEEEEEecCCCCCcEEEEEEE---EEC-CCCCCCHHHHHHHHHHHHHHHHH
Confidence            12  22210     0  0000011345567788888642  334344333   234 333 3344566666666677788


Q ss_pred             HHHHHHhhhh
Q 028067          194 SLADVSEHLA  203 (214)
Q Consensus       194 ~L~~~le~~a  203 (214)
                      +|++.+++..
T Consensus       218 ~Lr~~~~~~~  227 (229)
T 1em2_A          218 HLRQRISELG  227 (229)
T ss_dssp             HHHHHHHHTT
T ss_pred             HHHHHHHHhc
Confidence            8888887753

>1jss_A Stard4, cholesterol-regulated start protein 4; start domain, structural genomics, PSI, protein structure initiative; 2.20A {Mus musculus} SCOP: d.129.3.2

Probab=93.46  E-value=2.6  Score=34.33  Aligned_cols=141  Identities=11%  Similarity=-0.083  Sum_probs=72.3

Q ss_pred             eecCCHHHHHHHHhcCCCCCccCccceEEEE-ec-CCCCCeEEEEEeeCCC-----CcceEEEEEEEEeCCCcEEEEEEE
Q 028067           46 HIKAPVHLVWSLVRRFDQPQKYKPFVSRCIV-QG-DLQIGSVREVNVKSGL-----PATTSTERLELLDDEEHIFGMRIV  118 (214)
Q Consensus        46 ~I~APae~VW~vi~Df~~l~~W~P~V~s~~v-eG-~g~VGsvR~l~~~~G~-----p~~~v~ErL~~~D~~~~~~~Y~iv  118 (214)
                      +|++|+++|++++.|...-+.|.+.+.++++ +- +.. -.+-+.......     |.-.+.-|-..-++.+..+...-+
T Consensus        74 ~v~~~~~~v~~~l~d~~~r~~Wd~~~~~~~vle~id~~-~~I~y~~~~~~~~~~v~~RDfv~~r~~~~~~~~~vi~~~Sv  152 (224)
T 1jss_A           74 VMDDVVNNVIDHIRPGPWRLDWDRLMTSLDVLEHFEEN-CCVMRYTTAGQLLNIISPREFVDFSYTVGYEEGLLSCGVSV  152 (224)
T ss_dssp             EESSCHHHHHHHHSSSTTHHHHCSSEEEEEEEEECSTT-EEEEEEEECCBTTTTBCCEEEEEEEEEEEETTEEEEEEEEC
T ss_pred             EEeCCHHHHHHHHhCcccccccccceeeEEEEEEcCCC-eEEEEEEcccccCCCCCCCeEEEEEEEEEcCCeEEEEEeee
Confidence            7899999999999997777899999999974 42 111 123222222211     111122222222232322211111


Q ss_pred             cCcccceeeeccccccccCCCcceeeEEEEEEEeecCC--CcceEEEEEEEEeeCCCCCCHHHHHHHHHHHHHHHHHHHH
Q 028067          119 GGDHRLKIIWNFSNFISTSSSKLQNYSSIVTVHPEVID--GRPGTLVIESFVVDVPDGNTKDETCYFVEALIKCNLKSLA  196 (214)
Q Consensus       119 ~g~~~~~~~~~~~~~~~~~~~p~~~y~ati~v~p~~~~--gs~~t~~~~s~~~~~p~~~~~~~~~~~v~~~~~~gL~~L~  196 (214)
                        +++.        + ..+-.-...+.+-+.+.|..++  .|.+++..   ..|+--....-.+..++......-+++|+
T Consensus       153 --~hp~--------~-~~g~VR~~~~~~g~~i~p~~~~~~~t~vt~~~---~~Dp~G~iP~~lvn~~~~~~~~~~~~~Lr  218 (224)
T 1jss_A          153 --EWSE--------T-RPEFVRGYNHPCGWFCVPLKDSPSQSLLTGYI---QTDLRGMIPQSAVDTAMASTLANFYSDLR  218 (224)
T ss_dssp             --CCCC--------C-CTTSEECEECSEEEEEEEETTEEEEEEEEEEE---CEECCSCCCHHHHHHHHHHHHHHHHHHHH
T ss_pred             --ecCC--------C-CCCCEEEEecccEEEEEEcCCCCCceEEEEEE---EeCCCCCccHHHHHHHHHHhHHHHHHHHH
Confidence              2222        1 0111223456677889997533  34444333   23432223344555566666666777888


Q ss_pred             HHHhh
Q 028067          197 DVSEH  201 (214)
Q Consensus       197 ~~le~  201 (214)
                      +.+++
T Consensus       219 ~~~~~  223 (224)
T 1jss_A          219 KGLRK  223 (224)
T ss_dssp             HHTC-
T ss_pred             HHHhh
Confidence            77654

>2r55_A STAR-related lipid transfer protein 5; alpha and beta protein, cholesterol binding, structural GENO structural genomics consortium, SGC; 2.50A {Homo sapiens}

Probab=92.71  E-value=3.4  Score=33.57  Aligned_cols=149  Identities=9%  Similarity=-0.076  Sum_probs=74.6

Q ss_pred             EEEEEeeeecCCHHHHHHHH--hcCCCCCccCccceEEEE-ecCCCCCeEEE-EEeeC-CCCc---ceEEEEEEEEeCCC
Q 028067           39 CSSSLVKHIKAPVHLVWSLV--RRFDQPQKYKPFVSRCIV-QGDLQIGSVRE-VNVKS-GLPA---TTSTERLELLDDEE  110 (214)
Q Consensus        39 ve~sI~~~I~APae~VW~vi--~Df~~l~~W~P~V~s~~v-eG~g~VGsvR~-l~~~~-G~p~---~~v~ErL~~~D~~~  110 (214)
                      +..+.  +|++|+++|++++  .|....+.|.+.+.++++ +--..-..+.+ ++... +.|.   -.+.-|-...++.+
T Consensus        69 ~k~~~--~v~~~~~~v~~~l~~~d~~~r~~Wd~~~~~~~vle~i~~~~~i~~~~~~~~~~~~v~~RDfv~~r~~~~~~~g  146 (231)
T 2r55_A           69 YRGEG--IVYGTLEEVWDCVKPAVGGLRVKWDENVTGFEIIQSITDTLCVSRTSTPSAAMKLISPRDFVDLVLVKRYEDG  146 (231)
T ss_dssp             EEEEE--EESSCHHHHHHHHCC--CCSHHHHCTTCSEEEEEEECSSSEEEEEEECCCBTTTTBCCEEEEEEEEEEECTTS
T ss_pred             EEEEE--EECCCHHHHHHHHHhhCcchhhhhccccceeEEEEEcCCCEEEEEEEeccccCCccCCCeEEEEEEEEEcCCC
Confidence            44444  7799999999999  888888999999988864 42111122322 22111 1121   12222222333322


Q ss_pred             -cEE-EEEEEcCcccceeeeccccccccCCCcceeeEEEEEEEeec--CCCcceEEEEEEEEeeCCCCCCHHHHHHHHHH
Q 028067          111 -HIF-GMRIVGGDHRLKIIWNFSNFISTSSSKLQNYSSIVTVHPEV--IDGRPGTLVIESFVVDVPDGNTKDETCYFVEA  186 (214)
Q Consensus       111 -~~~-~Y~iv~g~~~~~~~~~~~~~~~~~~~p~~~y~ati~v~p~~--~~gs~~t~~~~s~~~~~p~~~~~~~~~~~v~~  186 (214)
                       ..+ ..++.....+..          .+-.-...+.+-+.+.|..  +++|.++++..   .|+-.......+..++..
T Consensus       147 ~~vi~~~Sv~~~~~P~~----------~~~VR~~~~~~g~~i~p~~~~~~~t~vt~~~~---~Dp~G~iP~~lvn~~~~~  213 (231)
T 2r55_A          147 TISSNATHVEHPLCPPK----------PGFVRGFNHPCGCFCEPLPGEPTKTNLVTFFH---TDLSGYLPQNVVDSFFPR  213 (231)
T ss_dssp             CEEEEEEECCCTTSCCC----------TTCEEEEECSEEEEEEECC--CCCEEEEEEEC---EECCSSCCHHHHHHHHHH
T ss_pred             EEEEEEEeccCCCCCCC----------CCCEEEEEEeeEEEEEEeCCCCCcEEEEEEEE---eCCCCCccHHHHHHHHhH
Confidence             222 222321111110          0001123445667788864  24555554432   343222334556666666


Q ss_pred             HHHHHHHHHHHHHhhh
Q 028067          187 LIKCNLKSLADVSEHL  202 (214)
Q Consensus       187 ~~~~gL~~L~~~le~~  202 (214)
                      .....+++|++.+++.
T Consensus       214 ~~~~~~~~Lr~~~~~~  229 (231)
T 2r55_A          214 SMTRFYANLQKAVKQF  229 (231)
T ss_dssp             HHHHHHHHHHHHHHGG
T ss_pred             hHHHHHHHHHHHHHHh
Confidence            7777788888888764

>3p0l_A Steroidogenic acute regulatory protein, mitochond; structural genomics consortium, SGC, start domain, cholester transport, cholesterol; 3.40A {Homo sapiens}

Probab=89.79  E-value=6.9  Score=31.60  Aligned_cols=147  Identities=11%  Similarity=0.062  Sum_probs=73.5

Q ss_pred             eEEEEEeeeecCCHHHHHHHH-hcCCCCCccCccceEEEE-ecCCCCCe-EEEEEeeC--CCCc---ceEEEEEEEEeCC
Q 028067           38 QCSSSLVKHIKAPVHLVWSLV-RRFDQPQKYKPFVSRCIV-QGDLQIGS-VREVNVKS--GLPA---TTSTERLELLDDE  109 (214)
Q Consensus        38 ~ve~sI~~~I~APae~VW~vi-~Df~~l~~W~P~V~s~~v-eG~g~VGs-vR~l~~~~--G~p~---~~v~ErL~~~D~~  109 (214)
                      .+....  .|++|+++|++++ .|+...+.|.+.+.++++ +--. ..+ +-+.....  ..|.   -.+.-|-...++.
T Consensus        56 ~~k~~~--~v~~~~~~v~~~l~~d~~~r~~Wd~~~~~~~vle~~~-~~t~I~y~~~~~~~~~~v~~RDfv~~r~~~~~~~  132 (221)
T 3p0l_A           56 VFRLEV--VVDQPMERLYEELVERMEAMGEWNPNVKEIKVLQKIG-KDTFITHELAAEAAGNLVGPRDFVSVRCAKRRGS  132 (221)
T ss_dssp             EEEEEE--EESSCHHHHHHHHTTTGGGTTTSCTTCSEEEEEEECS-SSEEEEEEEECC---CCSCCEEEEEEEEEEECSS
T ss_pred             EEEEEE--EEcCCHHHHHHHHHhccchhhhcCcchheEEEEEecC-CCeEEEEEeeccccCCccCCceEEEEEEEEEcCC
Confidence            344444  7799999999998 688888999999999974 4211 122 22222222  1121   1122222222332


Q ss_pred             CcEEEEEEEc-CcccceeeeccccccccCCCcceeeEEEEEEEeecCC--CcceEEEEEEEEeeCCCCCCHHHHHHHHHH
Q 028067          110 EHIFGMRIVG-GDHRLKIIWNFSNFISTSSSKLQNYSSIVTVHPEVID--GRPGTLVIESFVVDVPDGNTKDETCYFVEA  186 (214)
Q Consensus       110 ~~~~~Y~iv~-g~~~~~~~~~~~~~~~~~~~p~~~y~ati~v~p~~~~--gs~~t~~~~s~~~~~p~~~~~~~~~~~v~~  186 (214)
                      ...+..+-++ ...|..     ++|     .-...+.+-+.+.|.+++  +|.+++...   .|+--....-.+..++..
T Consensus       133 ~~vi~~~Sv~~~~~P~~-----~g~-----VR~~~~~~g~~i~p~~~~~~~t~vt~~~~---~Dp~G~iP~~lvn~~~~~  199 (221)
T 3p0l_A          133 TCVLAGMATDFGNMPEQ-----KGV-----IRAEHGPTCMVLHPLAGSPSKTKLTWLLS---IDLKGWLPKSIINQVLSQ  199 (221)
T ss_dssp             CEEECCEECCCTTSCCC-----TTS-----EECEECSCEEEEEEETTEEEEEEEEEEEC---EECCSSCCHHHHHHHHHH
T ss_pred             eEEEEEEeccCCCCCCC-----CCe-----EEEeccceEEEEEECCCCCCcEEEEEEEE---ecCCCCCCHHHHHHHHHH
Confidence            2222111111 111110     000     112445677788998744  454444432   353222334455555555


Q ss_pred             HHHHHHHHHHHHHh
Q 028067          187 LIKCNLKSLADVSE  200 (214)
Q Consensus       187 ~~~~gL~~L~~~le  200 (214)
                      ..-.-+++|++.++
T Consensus       200 ~~~~~~~~Lr~~~~  213 (221)
T 3p0l_A          200 TQVDFANHLRKRLE  213 (221)
T ss_dssp             HHHHHHHHHHHHTC
T ss_pred             HHHHHHHHHHHHHh
Confidence            55667888888877

>2pso_A STAR-related lipid transfer protein 13; alpha and beta protein, lipid binding, helix swapping, struc genomics, structural genomics consortium, SGC; 2.80A {Homo sapiens} SCOP: d.129.3.2

Probab=87.78  E-value=8  Score=32.02  Aligned_cols=142  Identities=13%  Similarity=0.072  Sum_probs=72.0

Q ss_pred             EEEEEeeeecCCHHHHH-HHHhcCCCCCccCccceEEEE-ec--CCCCCeEEEEEeeCCCCc---ceEEEEEEE--EeCC
Q 028067           39 CSSSLVKHIKAPVHLVW-SLVRRFDQPQKYKPFVSRCIV-QG--DLQIGSVREVNVKSGLPA---TTSTERLEL--LDDE  109 (214)
Q Consensus        39 ve~sI~~~I~APae~VW-~vi~Df~~l~~W~P~V~s~~v-eG--~g~VGsvR~l~~~~G~p~---~~v~ErL~~--~D~~  109 (214)
                      +..+.  +|+++++++. .++.|   .+.|.+.+.++++ +-  +.  -.+-+..+....|.   -.+.-|-..  +++.
T Consensus        77 ~K~~~--~v~~~~~~v~~~ll~d---r~~Wd~~~~~~~vle~id~~--~~I~y~~~~~p~p~~~RDfv~~r~~r~~~~~g  149 (237)
T 2pso_A           77 WKASV--EVEAPPSVVLNRVLRE---RHLWDEDFVQWKVVETLDRQ--TEIYQYVLNSMAPHPSRDFVVLRTWKTDLPKG  149 (237)
T ss_dssp             EEEEE--EESSCHHHHHHHHHHC---GGGTCTTBCCCEEEEEEETT--EEEEEEEECCSSSCCCEEEEEEEEEESCCGGG
T ss_pred             EEEEE--EEcCChHHHHHHHHhh---hhhHHhhhceEEEEEEcCCC--cEEEEEEecCCCCcCCeEEEEEEEEEEECCCC
Confidence            44455  7799998886 46677   5799999988863 42  22  12333333322221   112222222  2333


Q ss_pred             CcEEEEEEEcCc-ccceeeeccccccccCCCcceeeEEEEEEEeecCCCcceEEEEEEEEeeCCCCCCHHHHHHHHHHHH
Q 028067          110 EHIFGMRIVGGD-HRLKIIWNFSNFISTSSSKLQNYSSIVTVHPEVIDGRPGTLVIESFVVDVPDGNTKDETCYFVEALI  188 (214)
Q Consensus       110 ~~~~~Y~iv~g~-~~~~~~~~~~~~~~~~~~p~~~y~ati~v~p~~~~gs~~t~~~~s~~~~~p~~~~~~~~~~~v~~~~  188 (214)
                      ...+..+-++-+ .|..      +|     .-...+.+-+.+.|.++++|.++++..   .|+ .|....-+..++....
T Consensus       150 ~~vi~~~Sv~h~~~P~~------g~-----VR~~~~~~g~~i~P~~~~~t~vt~~~~---~Dp-~G~iP~~ln~~~~~~~  214 (237)
T 2pso_A          150 MCTLVSLSVEHEEAQLL------GG-----VRAVVMDSQYLIEPCGSGKSRLTHICR---IDL-KGHSPEWYSKGFGHLC  214 (237)
T ss_dssp             CEEEEEEECCCTTCCCC------SS-----EECCEEEEEEEEEECSTTCEEEEEEEE---ECC-SSSCTTTTTTHHHHHH
T ss_pred             EEEEEEEcccCCCCCCC------Cc-----EEEEEeccEEEEEECCCCCEEEEEEEE---eCC-CCCchHHHHHHHHHHH
Confidence            344444333321 1110      01     123567788899998766665555543   342 1211111123334444


Q ss_pred             HHHHHHHHHHHhhh
Q 028067          189 KCNLKSLADVSEHL  202 (214)
Q Consensus       189 ~~gL~~L~~~le~~  202 (214)
                      -.-|++|++.++++
T Consensus       215 ~~~l~~LR~~~~~~  228 (237)
T 2pso_A          215 AAEVARIRNSFQPL  228 (237)
T ss_dssp             HHHHHHHHHTTSCC
T ss_pred             HHHHHHHHHHHHhh
Confidence            45688888888775

>2e3n_A Lipid-transfer protein CERT; ceramide transfer, lipid transport; HET: 6CM; 1.40A {Homo sapiens} PDB: 2e3m_A* 2e3o_A* 2e3p_A* 2e3q_A* 2e3r_A* 2e3s_A 2z9y_A* 3h3q_A* 3h3r_A* 3h3s_A* 3h3t_A* 2z9z_A*

Probab=85.98  E-value=13  Score=30.54  Aligned_cols=30  Identities=13%  Similarity=0.111  Sum_probs=27.2

Q ss_pred             ecCCHHHHHHHHhcCCCCCccCccceEEEE
Q 028067           47 IKAPVHLVWSLVRRFDQPQKYKPFVSRCIV   76 (214)
Q Consensus        47 I~APae~VW~vi~Df~~l~~W~P~V~s~~v   76 (214)
                      .++++++|++++.|+...+.|.+.+.++++
T Consensus        82 ~~~~~~~v~~~l~d~~~r~~Wd~~~~~~~v  111 (255)
T 2e3n_A           82 KGVTGHEVCNYFWNVDVRNDWETTIENFHV  111 (255)
T ss_dssp             ETCCHHHHHHHHHCGGGHHHHCCSEEEEEE
T ss_pred             cCCCHHHHHHHHhCcchHhhhhhhcceeEE
Confidence            369999999999999999999999999974

>3fo5_A Thioesterase, adipose associated, isoform BFIT2; orthogonal bundle, consortium, lipid transport; HET: 1PE TCE; 2.00A {Homo sapiens}

Probab=80.91  E-value=1.7  Score=37.11  Aligned_cols=37  Identities=5%  Similarity=0.115  Sum_probs=31.6

Q ss_pred             eEEEEEeeeecCCHHHHHHHHhcCCCCCccCccceEEEE
Q 028067           38 QCSSSLVKHIKAPVHLVWSLVRRFDQPQKYKPFVSRCIV   76 (214)
Q Consensus        38 ~ve~sI~~~I~APae~VW~vi~Df~~l~~W~P~V~s~~v   76 (214)
                      .+..+.  +|++|++.||+++.|....+.|.+.+.++++
T Consensus        89 ~~k~~~--~v~~~~~~v~~~L~D~~~R~~WD~~~~~~~v  125 (258)
T 3fo5_A           89 SFHMEM--VVHVDAAQAFLLLSDLRQRPEWDKHYRSVEL  125 (258)
T ss_dssp             EEEEEE--EESSCHHHHHHHHHCGGGGGGTCTTCCEEEE
T ss_pred             EEEEEE--EEeCCHHHHHHHHhCchhHhHhhhhccEEEE
Confidence            344444  7899999999999999989999999999974

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	214
d1xdfa1	157	d.129.3.1 (A:1-157) Plant pathogenesis-related pro	3e-14
d2bk0a1	153	d.129.3.1 (A:2-154) Major allergen api g 1 {Celery	4e-14
d1icxa_	155	d.129.3.1 (A:) Plant pathogenesis-related protein	2e-13
d1e09a_	159	d.129.3.1 (A:) Major tree pollen allergen {Sweet c	4e-13
d3cnwa1	138	d.129.3.8 (A:3-140) Uncharacterized protein XoxI {	6e-13
d1fm4a_	159	d.129.3.1 (A:) Major tree pollen allergen {Europea	7e-13
d1txca1	147	d.129.3.1 (A:1-147) Plant pathogenesis-related pro	1e-10
d2d4ra1	146	d.129.3.6 (A:2-147) Hypothetical protein TTHA0849	0.001

>d1xdfa1 d.129.3.1 (A:1-157) Plant pathogenesis-related protein PR10 {Yellow lupine (Lupinus luteus) [TaxId: 3873]} Length = 157

class: Alpha and beta proteins (a+b)
fold: TBP-like
superfamily: Bet v1-like
family: Pathogenesis-related protein 10 (PR10)-like
domain: Plant pathogenesis-related protein PR10
species: Yellow lupine (Lupinus luteus) [TaxId: 3873]

 Score = 65.3 bits (159), Expect = 3e-14
 Identities = 23/111 (20%), Positives = 41/111 (36%), Gaps = 2/111 (1%)

Query: 49  APVHLVWSLVRRFDQ--PQKYKPFVSRCIVQGDLQIGSVREVNVKSGLPATTSTERLELL 106
           AP  L  +LV+  D   P+  +   S   V+G+   G+++++ +  G        ++E +
Sbjct: 14  APARLYKALVKDADAIIPKAVEAIQSIETVEGNGGPGTIKKLTLIEGGETKYVLHKIEAV 73

Query: 107 DDEEHIFGMRIVGGDHRLKIIWNFSNFISTSSSKLQNYSSIVTVHPEVIDG 157
           D+    +   IVGG      I   S                VT+  E    
Sbjct: 74  DEANLRYNYSIVGGVGLPDTIEKISFETKLVEGANGGSIGKVTIKIETKGD 124

>d2bk0a1 d.129.3.1 (A:2-154) Major allergen api g 1 {Celery (Apium graveolens) [TaxId: 4045]} Length = 153

class: Alpha and beta proteins (a+b)
fold: TBP-like
superfamily: Bet v1-like
family: Pathogenesis-related protein 10 (PR10)-like
domain: Major allergen api g 1
species: Celery (Apium graveolens) [TaxId: 4045]

 Score = 64.9 bits (158), Expect = 4e-14
 Identities = 20/111 (18%), Positives = 39/111 (35%), Gaps = 2/111 (1%)

Query: 49  APVHLVWSLVRRFDQ--PQKYKPFVSRCIVQGDLQIGSVREVNVKSGLPATTSTERLELL 106
           +   +    V   D   P+          ++GD   G+++ + +  G P TT T R++ +
Sbjct: 14  SAEKIFQGFVIDVDTVLPKAAPGAYKSVEIKGDGGPGTLKIITLPDGGPITTMTLRIDGV 73

Query: 107 DDEEHIFGMRIVGGDHRLKIIWNFSNFISTSSSKLQNYSSIVTVHPEVIDG 157
           + E   F   ++ GD  L  I +  N +    +         T        
Sbjct: 74  NKEALTFDYSVIDGDILLGFIESIENHVVLVPTADGGSICKTTAIFHTKGD 124

>d1icxa_ d.129.3.1 (A:) Plant pathogenesis-related protein PR10 {Yellow lupine (Lupinus luteus) [TaxId: 3873]} Length = 155

class: Alpha and beta proteins (a+b)
fold: TBP-like
superfamily: Bet v1-like
family: Pathogenesis-related protein 10 (PR10)-like
domain: Plant pathogenesis-related protein PR10
species: Yellow lupine (Lupinus luteus) [TaxId: 3873]

 Score = 63.4 bits (154), Expect = 2e-13
 Identities = 19/111 (17%), Positives = 42/111 (37%), Gaps = 2/111 (1%)

Query: 49  APVHLVWSLVRRFDQ--PQKYKPFVSRCIVQGDLQIGSVREVNVKSGLPATTSTERLELL 106
           AP  L  +L +  D+  P+  +P  S  IV+G+   G+++++        +    +L+ +
Sbjct: 14  APAKLYKALTKDSDEIVPKVIEPIQSVEIVEGNGGPGTIKKIIAIHDGHTSFVLHKLDAI 73

Query: 107 DDEEHIFGMRIVGGDHRLKIIWNFSNFISTSSSKLQNYSSIVTVHPEVIDG 157
           D+    +   I+GG+   + +   S                + V       
Sbjct: 74  DEANLTYNYSIIGGEGLDESLEKISYESKILPGPDGGSIGKINVKFHTKGD 124

>d1e09a_ d.129.3.1 (A:) Major tree pollen allergen {Sweet cherry (Prunus avium), pru av 1 [TaxId: 42229]} Length = 159

class: Alpha and beta proteins (a+b)
fold: TBP-like
superfamily: Bet v1-like
family: Pathogenesis-related protein 10 (PR10)-like
domain: Major tree pollen allergen
species: Sweet cherry (Prunus avium), pru av 1 [TaxId: 42229]

 Score = 62.2 bits (151), Expect = 4e-13
 Identities = 18/134 (13%), Positives = 40/134 (29%), Gaps = 20/134 (14%)

Query: 49  APVHLVWSLVRRFD--QPQKYKPFVSRC-IVQGDLQIGSVREVNVKSGLPATTSTERLEL 105
            P  L  + V   D   P+     +    I++GD   G+++++    G        +++ 
Sbjct: 14  PPPRLFKAFVLDADNLVPKIAPQAIKHSEILEGDGGPGTIKKITFGEGSQYGYVKHKIDS 73

Query: 106 LDDEEHIFGMRIVGGDHRLKIIWNFSNFISTSSSKLQNYSSIVTVHPEVIDGRPGTLVIE 165
           +D E + +   ++ GD                         I      V     G+++  
Sbjct: 74  IDKENYSYSYTLIEGDALGD-----------------TLEKISYETKLVASPSGGSIIKS 116

Query: 166 SFVVDVPDGNTKDE 179
           +            E
Sbjct: 117 TSHYHTKGNVEIKE 130

>d3cnwa1 d.129.3.8 (A:3-140) Uncharacterized protein XoxI {Bacillus cereus [TaxId: 1396]} Length = 138

class: Alpha and beta proteins (a+b)
fold: TBP-like
superfamily: Bet v1-like
family: Atu1531-like
domain: Uncharacterized protein XoxI
species: Bacillus cereus [TaxId: 1396]

 Score = 61.4 bits (148), Expect = 6e-13
 Identities = 26/150 (17%), Positives = 46/150 (30%), Gaps = 26/150 (17%)

Query: 47  IKAPVHLVWSLVRRFDQPQKYKPFVSRCIVQGDLQIGSVREVNVKSGLPATTSTERLELL 106
           I      VW L+  F+    + P++    +           V   +     T  ERLE+ 
Sbjct: 10  IFGSPEQVWQLIGGFNSLPDWLPYIPSSKLTEG------GRVRHLANPDGDTIIERLEVF 63

Query: 107 DDEEHIFGMRIVGGDHRLKIIWNFSNFISTSSSKLQNYSSIVTVHPEVIDGRPGTLVIES 166
           +D+E  +   I+     +                  NY S + V          T ++E 
Sbjct: 64  NDKERYYTYSIMNAPFPVT-----------------NYLSTIQVKE---GTESNTSLVEW 103

Query: 167 FVVDVPDGNTKDETCYFVEALIKCNLKSLA 196
                P   + +E       +    LK+L 
Sbjct: 104 SGTFTPVEVSDEEAINLFHGIYSDGLKALQ 133

>d1fm4a_ d.129.3.1 (A:) Major tree pollen allergen {European white birch (Betula pendula), Bet v 1-l [TaxId: 3505]} Length = 159

class: Alpha and beta proteins (a+b)
fold: TBP-like
superfamily: Bet v1-like
family: Pathogenesis-related protein 10 (PR10)-like
domain: Major tree pollen allergen
species: European white birch (Betula pendula), Bet v 1-l [TaxId: 3505]

 Score = 61.8 bits (150), Expect = 7e-13
 Identities = 14/106 (13%), Positives = 41/106 (38%), Gaps = 5/106 (4%)

Query: 49  APVHLVWSLVRRFD--QPQKYKPFVSRC-IVQGDLQIGSVREVNVKSGLPATTSTERLEL 105
               +  + +   D   P+     +S    ++G+   G+++++N   G P     +R++ 
Sbjct: 14  PAARMFKAFILDGDKLVPKVAPQAISSVENIEGNGGPGTIKKINFPEGFPFKYVKDRVDE 73

Query: 106 LDDEEHIFGMRIVGGDHRLKIIWNFSNFISTSSSKLQNYSSIVTVH 151
           +D     +   ++ G      +   SN I   ++   +   ++ + 
Sbjct: 74  VDHTNFKYNYSVIEGGPVGDTLEKISNEIKIVATP--DGGCVLKIS 117

>d1txca1 d.129.3.1 (A:1-147) Plant pathogenesis-related protein PR10 {Jicama (Pachyrhizus erosus), SPE-16 [TaxId: 109171]} Length = 147

class: Alpha and beta proteins (a+b)
fold: TBP-like
superfamily: Bet v1-like
family: Pathogenesis-related protein 10 (PR10)-like
domain: Plant pathogenesis-related protein PR10
species: Jicama (Pachyrhizus erosus), SPE-16 [TaxId: 109171]

 Score = 55.4 bits (133), Expect = 1e-10
 Identities = 19/94 (20%), Positives = 41/94 (43%), Gaps = 2/94 (2%)

Query: 49  APVHLVWSLVRRFDQ-PQKY-KPFVSRCIVQGDLQIGSVREVNVKSGLPATTSTERLELL 106
           AP  L  +L +  D   QK   P  S  +V+G+  +G+++++    G   +   ++++ +
Sbjct: 14  APAKLYKALTKDSDTIAQKIDGPIQSIELVEGNGGVGTIKKITANEGDKTSFVLQKVDAI 73

Query: 107 DDEEHIFGMRIVGGDHRLKIIWNFSNFISTSSSK 140
           D+    +   IVGG    + +   S      +  
Sbjct: 74  DEANLGYDYSIVGGTGLPESLEKLSFETKVVAGS 107

>d2d4ra1 d.129.3.6 (A:2-147) Hypothetical protein TTHA0849 {Thermus thermophilus [TaxId: 274]} Length = 146

class: Alpha and beta proteins (a+b)
fold: TBP-like
superfamily: Bet v1-like
family: oligoketide cyclase/dehydrase-like
domain: Hypothetical protein TTHA0849
species: Thermus thermophilus [TaxId: 274]

 Score = 36.0 bits (82), Expect = 0.001
 Identities = 15/86 (17%), Positives = 25/86 (29%)

Query: 45  KHIKAPVHLVWSLVRRFDQPQKYKPFVSRCIVQGDLQIGSVREVNVKSGLPATTSTERLE 104
           ++I AP   V+ L +  +  + Y   V    V       +       +        E  E
Sbjct: 7   RYIPAPPERVYRLAKDLEGLKPYLKEVESLEVVAREGARTRSRWVAVAMGKKVRWLEEEE 66

Query: 105 LLDDEEHIFGMRIVGGDHRLKIIWNF 130
             D+          G   R +  W F
Sbjct: 67  WDDENLRNRFFSPEGDFDRYEGTWVF 92

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	214
d3cnwa1	138	Uncharacterized protein XoxI {Bacillus cereus [Tax	99.94
d1txca1	147	Plant pathogenesis-related protein PR10 {Jicama (P	99.9
d2bk0a1	153	Major allergen api g 1 {Celery (Apium graveolens)	99.87
d1fm4a_	159	Major tree pollen allergen {European white birch (	99.87
d1e09a_	159	Major tree pollen allergen {Sweet cherry (Prunus a	99.86
d1xdfa1	157	Plant pathogenesis-related protein PR10 {Yellow lu	99.86
d1icxa_	155	Plant pathogenesis-related protein PR10 {Yellow lu	99.84
d2rera1	155	Multifunctional enzyme TcmN, cyclase/aromatase dom	99.74
d2b79a1	137	Hypothetical protein SMU440 {Streptococcus mutans	99.73
d2d4ra1	146	Hypothetical protein TTHA0849 {Thermus thermophilu	99.69
d2ns9a1	147	Hypothetical protein APE2225 {Aeropyrum pernix [Ta	99.56
d1vjha_	120	Hypothetical protein At1G24000 {Thale cress (Arabi	99.33
d2qpva1	133	Uncharacterized protein Atu1531 {Agrobacterium tum	99.26
d2pcsa1	147	Hypothetical protein GKP20 {Geobacillus kaustophil	99.08
d1t17a_	148	Hypothetical protein CC1736 {Caulobacter crescentu	99.03
d1xuva_	163	Hypothetical protein MM0500 {Methanosarcina mazei	99.01
d2il5a1	164	Hypothetical protein SA2116 {Staphylococcus aureus	98.89
d1z94a1	143	Hypothetical protein CV1439 {Chromobacterium viola	98.82
d1xfsa_	165	Hypothetical protein NE0264 {Nitrosomonas europaea	98.79
d1xn6a_	143	Hypothetical protein BC4709 {Bacillus cereus [TaxI	98.74
d1xn5a_	138	Hypothetical protein BH1534 {Bacillus halodurans [	98.73
d1zxfa1	155	Calicheamicin gene cluster protein CalC {Micromono	98.6
d2nn5a1	160	Hypothetical protein EF2215 {Enterococcus faecalis	98.54
d3elia1	143	Uncharacterized protein SPO3351 {Silicibacter pome	98.28
d2k5ga1	183	Uncharacterized protein BPP1335 {Bordetella parape	98.19
d1x53a1	132	Activator of 90 kda heat shock protein ATPase homo	97.87
d1em2a_	214	Lipid transport domain of Mln64 {Human (Homo sapie	96.25
d1jssa_	199	Cholesterol-regulated Start protein 4 (Stard4). {M	95.92
d1ln1a_	203	Phosphatidylcholine transfer protein {Human (Homo	94.5
d2ffsa1	151	Hypothetical protein PA1206 {Pseudomonas aeruginos	94.04
d2psoa1	197	Star-related lipid transfer protein 13 {Human (Hom	84.33

>d3cnwa1 d.129.3.8 (A:3-140) Uncharacterized protein XoxI {Bacillus cereus [TaxId: 1396]}

class: Alpha and beta proteins (a+b)
fold: TBP-like
superfamily: Bet v1-like
family: Atu1531-like
domain: Uncharacterized protein XoxI
species: Bacillus cereus [TaxId: 1396]

Probab=99.94  E-value=7e-26  Score=175.89  Aligned_cols=134  Identities=21%  Similarity=0.318  Sum_probs=115.0

Q ss_pred             eEEEEEeeeecCCHHHHHHHHhcCCCCCccCccceEEEEecCCCCCeEEEEEeeCCCCcceEEEEEEEEeCCCcEEEEEE
Q 028067           38 QCSSSLVKHIKAPVHLVWSLVRRFDQPQKYKPFVSRCIVQGDLQIGSVREVNVKSGLPATTSTERLELLDDEEHIFGMRI  117 (214)
Q Consensus        38 ~ve~sI~~~I~APae~VW~vi~Df~~l~~W~P~V~s~~veG~g~VGsvR~l~~~~G~p~~~v~ErL~~~D~~~~~~~Y~i  117 (214)
                      ++..||  +|+||||+||++++||.+++.|+|.+.+|+.+|   .|++|.+++.+|.   .+.|||+++|+++|+++|++
T Consensus         3 ~~~~si--~I~A~pe~VW~~v~df~~~~~W~p~v~~~~~~~---~G~~R~~~~~~g~---~~~E~l~~~d~~~~~~~y~~   74 (138)
T d3cnwa1           3 HTTTSM--EIFGSPEQVWQLIGGFNSLPDWLPYIPSSKLTE---GGRVRHLANPDGD---TIIERLEVFNDKERYYTYSI   74 (138)
T ss_dssp             EEEEEE--EESSCHHHHHHHHCCTTCGGGTCTTCSEEEEEG---GGTEEEEECTTCC---EEEEEEEEEETTTTEEEEEE
T ss_pred             cEEEEE--EEeCCHHHHHHHHhCccchHHHhcccceeEeec---CceeEEEEecCCc---eeEEEEEEEeCCCcEEEEEE
Confidence            577888  999999999999999999999999999998765   4889999998884   79999999999999999999


Q ss_pred             EcCcccceeeeccccccccCCCcceeeEEEEEEEeecCCC-cceEEEEEEEEeeCCCCCCHHHHHHHHHHHHHHHHHHHH
Q 028067          118 VGGDHRLKIIWNFSNFISTSSSKLQNYSSIVTVHPEVIDG-RPGTLVIESFVVDVPDGNTKDETCYFVEALIKCNLKSLA  196 (214)
Q Consensus       118 v~g~~~~~~~~~~~~~~~~~~~p~~~y~ati~v~p~~~~g-s~~t~~~~s~~~~~p~~~~~~~~~~~v~~~~~~gL~~L~  196 (214)
                      ++++                 +|+++|.++++|.|.++++ |.++|...   ++ |.+...+.+.++++++|+++|++|+
T Consensus        75 ~~~~-----------------~p~~~~~~~~~l~p~~~g~~t~v~w~~~---f~-p~~~~~~~~~~~~~~~~~~~l~~L~  133 (138)
T d3cnwa1          75 MNAP-----------------FPVTNYLSTIQVKEGTESNTSLVEWSGT---FT-PVEVSDEEAINLFHGIYSDGLKALQ  133 (138)
T ss_dssp             EECS-----------------SSEEEEEEEEEEEECSSTTCEEEEEEEE---EE-ESSSCHHHHHHHHHHHHHHHHHHHH
T ss_pred             ecCC-----------------CcceeeEEEEEEEECCCCCeEEEEEEEE---Ee-cCCCCHHHHHHHHHHHHHHHHHHHH
Confidence            9864                 4669999999999987544 55555443   34 5567778888999999999999999


Q ss_pred             HHHh
Q 028067          197 DVSE  200 (214)
Q Consensus       197 ~~le  200 (214)
                      +++.
T Consensus       134 ~~f~  137 (138)
T d3cnwa1         134 QAFL  137 (138)
T ss_dssp             HHHH
T ss_pred             Hhhc
Confidence            9874

>d1txca1 d.129.3.1 (A:1-147) Plant pathogenesis-related protein PR10 {Jicama (Pachyrhizus erosus), SPE-16 [TaxId: 109171]}

class: Alpha and beta proteins (a+b)
fold: TBP-like
superfamily: Bet v1-like
family: Pathogenesis-related protein 10 (PR10)-like
domain: Plant pathogenesis-related protein PR10
species: Jicama (Pachyrhizus erosus), SPE-16 [TaxId: 109171]

Probab=99.90  E-value=1.1e-23  Score=168.06  Aligned_cols=117  Identities=12%  Similarity=0.173  Sum_probs=102.2

Q ss_pred             ceEEEEEeeeecCCHHHHHH-HHhcCCCCCccCc-cceEEEE-ecCCCCCeEEEEEeeCCCCcceEEEEEEEEeCCCcEE
Q 028067           37 HQCSSSLVKHIKAPVHLVWS-LVRRFDQPQKYKP-FVSRCIV-QGDLQIGSVREVNVKSGLPATTSTERLELLDDEEHIF  113 (214)
Q Consensus        37 ~~ve~sI~~~I~APae~VW~-vi~Df~~l~~W~P-~V~s~~v-eG~g~VGsvR~l~~~~G~p~~~v~ErL~~~D~~~~~~  113 (214)
                      ..++.++  ++++||+++|. ++.||++++.|+| .+++|++ +|++++|++|.+++..|.|..+++|||+.+|+++|++
T Consensus         3 ~~~~~E~--~~~v~a~k~~ka~~~d~~~l~~~~p~~i~s~e~~eGdg~~GsIr~~~~~~g~~~~~~kErl~~iD~~~~~~   80 (147)
T d1txca1           3 FVFRDET--SSSVAPAKLYKALTKDSDTIAQKIDGPIQSIELVEGNGGVGTIKKITANEGDKTSFVLQKVDAIDEANLGY   80 (147)
T ss_dssp             EEEEEEE--EESSCHHHHHHHHHTTHHHHHHHTTSSEEEEEEEESSSSTTCEEEEEEEETTEEEEEEEEEEEEEGGGTEE
T ss_pred             eEEEEEE--eccCCHHHHHHhhhcccccCccccccccccceeecCCCCcceEEEEEEcCCCcceEEEEEEEEEccCCcEE
Confidence            3577888  99999999995 6679999976776 5888885 7898999999999998876678999999999999999


Q ss_pred             EEEEEcCcccceeeeccccccccCCCcceeeEEEEEEEeecCCCcceEEEEEEEEe
Q 028067          114 GMRIVGGDHRLKIIWNFSNFISTSSSKLQNYSSIVTVHPEVIDGRPGTLVIESFVV  169 (214)
Q Consensus       114 ~Y~iv~g~~~~~~~~~~~~~~~~~~~p~~~y~ati~v~p~~~~gs~~t~~~~s~~~  169 (214)
                      +|++++|+...              .++.+|++++++.|.+++||.++|...|+..
T Consensus        81 ~y~iiEGd~l~--------------~~~~s~~~~~~~~~~~~ggs~vkw~~~y~~~  122 (147)
T d1txca1          81 DYSIVGGTGLP--------------ESLEKLSFETKVVAGSGGGSISKVTLKFHTK  122 (147)
T ss_dssp             EEEEEESTTSC--------------TTEEEEEEEEEEEECSTTCEEEEEEEEEEET
T ss_pred             EEEEEccCccc--------------cceEEEEEEEEEecCCCCCcEEEEEEEEEEC
Confidence            99999997644              5789999999999998889999999998874

>d2bk0a1 d.129.3.1 (A:2-154) Major allergen api g 1 {Celery (Apium graveolens) [TaxId: 4045]}

class: Alpha and beta proteins (a+b)
fold: TBP-like
superfamily: Bet v1-like
family: Pathogenesis-related protein 10 (PR10)-like
domain: Major allergen api g 1
species: Celery (Apium graveolens) [TaxId: 4045]

Probab=99.87  E-value=1.8e-21  Score=156.24  Aligned_cols=116  Identities=18%  Similarity=0.210  Sum_probs=103.4

Q ss_pred             eEEEEEeeeecCCHHHHHHHH-hcCCCC-CccCc-cceEEEEecCCCCCeEEEEEeeCCCCcceEEEEEEEEeCCCcEEE
Q 028067           38 QCSSSLVKHIKAPVHLVWSLV-RRFDQP-QKYKP-FVSRCIVQGDLQIGSVREVNVKSGLPATTSTERLELLDDEEHIFG  114 (214)
Q Consensus        38 ~ve~sI~~~I~APae~VW~vi-~Df~~l-~~W~P-~V~s~~veG~g~VGsvR~l~~~~G~p~~~v~ErL~~~D~~~~~~~  114 (214)
                      +.+.++  ++++||+++|.++ .|++++ |++.| .+++|+++|+|++|++|.+++..|.|...++||++++|+++++++
T Consensus         4 t~e~E~--~~~v~a~k~~ka~~~d~~~l~Pk~~P~~i~sveveGdG~~GsIr~~~~~~~~~~~~~Kerve~iD~~~~~~~   81 (153)
T d2bk0a1           4 THVLEL--TSSVSAEKIFQGFVIDVDTVLPKAAPGAYKSVEIKGDGGPGTLKIITLPDGGPITTMTLRIDGVNKEALTFD   81 (153)
T ss_dssp             EEEEEE--EESSCHHHHHHHHTTSHHHHHHHHCGGGCSEEEEESSSSTTCEEEEECCTTSSCCEEEEEEEEEETTTTEEE
T ss_pred             EEEEEE--eccCCHHHHHHHHhhcccccccccccceeeEEEEECCCCCCeEEEEEEecCccceeeEEEEEEEecCccEEE
Confidence            567777  9999999999986 688885 99999 578889999999999999999988777889999999999999999


Q ss_pred             EEEEcCcccceeeeccccccccCCCcceeeEEEEEEEeecCCCcceEEEEEEEEe
Q 028067          115 MRIVGGDHRLKIIWNFSNFISTSSSKLQNYSSIVTVHPEVIDGRPGTLVIESFVV  169 (214)
Q Consensus       115 Y~iv~g~~~~~~~~~~~~~~~~~~~p~~~y~ati~v~p~~~~gs~~t~~~~s~~~  169 (214)
                      |++++|+...              ..+++|+.++++.|.+++||.++|++.|...
T Consensus        82 y~viEGd~l~--------------~~y~s~~~~~~~~~~~~ggsv~k~t~eYe~~  122 (153)
T d2bk0a1          82 YSVIDGDILL--------------GFIESIENHVVLVPTADGGSICKTTAIFHTK  122 (153)
T ss_dssp             EEEEESGGGT--------------TTEEEEEEEEEEEECTTSCEEEEEEEEEEES
T ss_pred             EEEEeccccc--------------ccEEEEEEEEEEecCCCCCeEEEEEEEEEEC
Confidence            9999998654              2579999999999999889999999998875

>d1fm4a_ d.129.3.1 (A:) Major tree pollen allergen {European white birch (Betula pendula), Bet v 1-l [TaxId: 3505]}

class: Alpha and beta proteins (a+b)
fold: TBP-like
superfamily: Bet v1-like
family: Pathogenesis-related protein 10 (PR10)-like
domain: Major tree pollen allergen
species: European white birch (Betula pendula), Bet v 1-l [TaxId: 3505]

Probab=99.87  E-value=1.2e-21  Score=158.13  Aligned_cols=117  Identities=14%  Similarity=0.212  Sum_probs=102.3

Q ss_pred             eEEEEEeeeecCCHHHHHHHH-hcCCCC-CccCcc-ceEEE-EecCCCCCeEEEEEeeCCCCcceEEEEEEEEeCCCcEE
Q 028067           38 QCSSSLVKHIKAPVHLVWSLV-RRFDQP-QKYKPF-VSRCI-VQGDLQIGSVREVNVKSGLPATTSTERLELLDDEEHIF  113 (214)
Q Consensus        38 ~ve~sI~~~I~APae~VW~vi-~Df~~l-~~W~P~-V~s~~-veG~g~VGsvR~l~~~~G~p~~~v~ErL~~~D~~~~~~  113 (214)
                      .++.++  ++++||+++|.++ .|++.+ ++|.|. +++|+ ++|++++|++|.+++..|.|...++|||+++|+++|++
T Consensus         4 ~~e~E~--~~~v~a~k~~k~~~~d~~~l~pk~~p~~i~~ie~~eGdg~~GsIr~~~~~~~~~~~~~Kerve~iD~~~~~~   81 (159)
T d1fm4a_           4 NYETEA--TSVIPAARMFKAFILDGDKLVPKVAPQAISSVENIEGNGGPGTIKKINFPEGFPFKYVKDRVDEVDHTNFKY   81 (159)
T ss_dssp             EEEEEE--EESSCHHHHHHHHTTTHHHHHHHHCTTTCCEEEEEECSSSTTCEEEEECCTTSSSSEEEEEEEEEETTTTEE
T ss_pred             EEEEEe--eccCCHHHHHHHHHhCcccccccccCcceEEEEEECCCCCCCCEEEEEecCCCCceEEEEEEEEEcccccEE
Confidence            567777  8999999999975 799985 899985 68887 57998999999999987777778999999999999999


Q ss_pred             EEEEEcCcccceeeeccccccccCCCcceeeEEEEEEEeecCCCcceEEEEEEEEee
Q 028067          114 GMRIVGGDHRLKIIWNFSNFISTSSSKLQNYSSIVTVHPEVIDGRPGTLVIESFVVD  170 (214)
Q Consensus       114 ~Y~iv~g~~~~~~~~~~~~~~~~~~~p~~~y~ati~v~p~~~~gs~~t~~~~s~~~~  170 (214)
                      +|++++|+...              .++++|+++++|.|.+++||.++|+..|+..+
T Consensus        82 ~y~viEGd~l~--------------~~~~s~~~~~k~~~~~~gg~v~kwt~eYe~~~  124 (159)
T d1fm4a_          82 NYSVIEGGPVG--------------DTLEKISNEIKIVATPDGGCVLKISNKYHTKG  124 (159)
T ss_dssp             EEEEEEBTTBT--------------TTEEEEEEEEEEEECTTSCEEEEEEEEEEEST
T ss_pred             EEEEEeccccc--------------cceEEEEEEEEEecCCCCceEEEEEEEEEECC
Confidence            99999998644              36899999999999998899999999988753

>d1e09a_ d.129.3.1 (A:) Major tree pollen allergen {Sweet cherry (Prunus avium), pru av 1 [TaxId: 42229]}

class: Alpha and beta proteins (a+b)
fold: TBP-like
superfamily: Bet v1-like
family: Pathogenesis-related protein 10 (PR10)-like
domain: Major tree pollen allergen
species: Sweet cherry (Prunus avium), pru av 1 [TaxId: 42229]

Probab=99.86  E-value=3.5e-21  Score=155.34  Aligned_cols=116  Identities=14%  Similarity=0.180  Sum_probs=101.7

Q ss_pred             eEEEEEeeeecCCHHHHHHHH-hcCCCC-CccCcc-ceEEEE-ecCCCCCeEEEEEeeCCCCcceEEEEEEEEeCCCcEE
Q 028067           38 QCSSSLVKHIKAPVHLVWSLV-RRFDQP-QKYKPF-VSRCIV-QGDLQIGSVREVNVKSGLPATTSTERLELLDDEEHIF  113 (214)
Q Consensus        38 ~ve~sI~~~I~APae~VW~vi-~Df~~l-~~W~P~-V~s~~v-eG~g~VGsvR~l~~~~G~p~~~v~ErL~~~D~~~~~~  113 (214)
                      .++.++  ++++||+++|.++ +|++++ +++.|. +++|++ +|++++||+|.+++..|.|..+++|||+++|+++|++
T Consensus         4 ~~~~E~--~~~vpa~k~~k~~~~d~~~l~pk~~p~~i~~ie~~eGdg~~GsIr~~~~~~~~~~~~~KErie~iD~~~~~~   81 (159)
T d1e09a_           4 TYESEF--TSEIPPPRLFKAFVLDADNLVPKIAPQAIKHSEILEGDGGPGTIKKITFGEGSQYGYVKHKIDSIDKENYSY   81 (159)
T ss_dssp             EEEEEE--EESSCHHHHHHHHTTTHHHHHHHHCTTTEEEEEEEESSSSTTCEEEEEECCSSSCEEEEEEEEEEETTTTEE
T ss_pred             EEEEEE--eecCCHHHHHHHHhcChhhcCcccCCcceeEEEEEcCCCCcCcEEEEEEcCCCCcEEEEEEEEEEcccccEE
Confidence            466777  8899999999885 799986 888885 688875 7999999999999998877788999999999999999


Q ss_pred             EEEEEcCcccceeeeccccccccCCCcceeeEEEEEEEeecCCCcceEEEEEEEEe
Q 028067          114 GMRIVGGDHRLKIIWNFSNFISTSSSKLQNYSSIVTVHPEVIDGRPGTLVIESFVV  169 (214)
Q Consensus       114 ~Y~iv~g~~~~~~~~~~~~~~~~~~~p~~~y~ati~v~p~~~~gs~~t~~~~s~~~  169 (214)
                      +|++++|+...              ..++.|+.++++.|.+++||.++|++.|+..
T Consensus        82 ~y~viEGd~l~--------------~~~~s~~~~~~~~~~~~~g~vvkwt~eYe~~  123 (159)
T d1e09a_          82 SYTLIEGDALG--------------DTLEKISYETKLVASPSGGSIIKSTSHYHTK  123 (159)
T ss_dssp             EEEECCCTTTG--------------GGEEEEEEEEEECCCTTSSEEEEEEEEEEEC
T ss_pred             EEEEEeccccc--------------ccEEEEEEEEEEccCCCCCcEEEEEEEEEEC
Confidence            99999998754              2578999999999998889999999998765

>d1xdfa1 d.129.3.1 (A:1-157) Plant pathogenesis-related protein PR10 {Yellow lupine (Lupinus luteus) [TaxId: 3873]}

class: Alpha and beta proteins (a+b)
fold: TBP-like
superfamily: Bet v1-like
family: Pathogenesis-related protein 10 (PR10)-like
domain: Plant pathogenesis-related protein PR10
species: Yellow lupine (Lupinus luteus) [TaxId: 3873]

Probab=99.86  E-value=4.1e-21  Score=154.90  Aligned_cols=116  Identities=14%  Similarity=0.161  Sum_probs=103.0

Q ss_pred             eEEEEEeeeecCCHHHHHHHH-hcCCCC-CccCccceEEE-EecCCCCCeEEEEEeeCCCCcceEEEEEEEEeCCCcEEE
Q 028067           38 QCSSSLVKHIKAPVHLVWSLV-RRFDQP-QKYKPFVSRCI-VQGDLQIGSVREVNVKSGLPATTSTERLELLDDEEHIFG  114 (214)
Q Consensus        38 ~ve~sI~~~I~APae~VW~vi-~Df~~l-~~W~P~V~s~~-veG~g~VGsvR~l~~~~G~p~~~v~ErL~~~D~~~~~~~  114 (214)
                      .++.++  ++++||+++|.++ .|++.+ +++.+.+++|+ ++|+|++||+|.+++..|.|...++|||+++|+++++++
T Consensus         4 t~~~E~--~~~v~a~k~fka~~~d~~~l~pk~p~~i~s~e~~eGdG~~GsIr~~~~~~g~~~~~~Kerie~vD~e~~~~~   81 (157)
T d1xdfa1           4 TFEDES--TSTIAPARLYKALVKDADAIIPKAVEAIQSIETVEGNGGPGTIKKLTLIEGGETKYVLHKIEAVDEANLRYN   81 (157)
T ss_dssp             EEEEEE--EESSCHHHHHHHHHHSHHHHHHHHCTTEEEEEEEESSSSTTCEEEEEEEETTEEEEEEEEEEEEEGGGTEEE
T ss_pred             EEEEEE--eccCCHHHHHHHHhhchhhccccchhheecceeecCCCCCCcEEEEEEcCCCccEEEEEEEEEEechhcEEE
Confidence            567777  9999999999875 699986 78888999998 589999999999999988777789999999999999999


Q ss_pred             EEEEcCcccceeeeccccccccCCCcceeeEEEEEEEeecCCCcceEEEEEEEEe
Q 028067          115 MRIVGGDHRLKIIWNFSNFISTSSSKLQNYSSIVTVHPEVIDGRPGTLVIESFVV  169 (214)
Q Consensus       115 Y~iv~g~~~~~~~~~~~~~~~~~~~p~~~y~ati~v~p~~~~gs~~t~~~~s~~~  169 (214)
                      |++++|+...              ..+++|+.++++.|.+++||.++|++.|+..
T Consensus        82 y~viEGd~l~--------------~~~~s~~~~~k~~~~~~ggsv~k~t~eYe~~  122 (157)
T d1xdfa1          82 YSIVGGVGLP--------------DTIEKISFETKLVEGANGGSIGKVTIKIETK  122 (157)
T ss_dssp             EEEESSTTSC--------------TTEEEEEEEEEEEECTTSSEEEEEEEEEEES
T ss_pred             EEEEeccccc--------------ccEEEEEEEEEEEcCCCCceEEEEEEEEEEC
Confidence            9999998654              2479999999999998889999999998875

>d1icxa_ d.129.3.1 (A:) Plant pathogenesis-related protein PR10 {Yellow lupine (Lupinus luteus) [TaxId: 3873]}

class: Alpha and beta proteins (a+b)
fold: TBP-like
superfamily: Bet v1-like
family: Pathogenesis-related protein 10 (PR10)-like
domain: Plant pathogenesis-related protein PR10
species: Yellow lupine (Lupinus luteus) [TaxId: 3873]

Probab=99.84  E-value=2.9e-20  Score=149.54  Aligned_cols=116  Identities=13%  Similarity=0.184  Sum_probs=103.1

Q ss_pred             eEEEEEeeeecCCHHHHHHHH-hcCCCC-CccCccceEEE-EecCCCCCeEEEEEeeCCCCcceEEEEEEEEeCCCcEEE
Q 028067           38 QCSSSLVKHIKAPVHLVWSLV-RRFDQP-QKYKPFVSRCI-VQGDLQIGSVREVNVKSGLPATTSTERLELLDDEEHIFG  114 (214)
Q Consensus        38 ~ve~sI~~~I~APae~VW~vi-~Df~~l-~~W~P~V~s~~-veG~g~VGsvR~l~~~~G~p~~~v~ErL~~~D~~~~~~~  114 (214)
                      .++.++  +.++||+++|.++ .|++++ +++.|.+++++ ++|+|++|++|.+++..|.|...++||++++|+++++++
T Consensus         4 t~~~E~--~~~v~a~klfka~~~d~~~l~pk~~~~i~s~e~~eGdGg~GsIk~~~~~~~~~~~~~Kerie~iD~en~~~~   81 (155)
T d1icxa_           4 AFENEQ--SSTVAPAKLYKALTKDSDEIVPKVIEPIQSVEIVEGNGGPGTIKKIIAIHDGHTSFVLHKLDAIDEANLTYN   81 (155)
T ss_dssp             EEEEEE--EESSCHHHHHHHHTTTHHHHHHHHSTTEEEEEEEESSSSTTCEEEEEEESSSSEEEEEEEEEEEEGGGTEEE
T ss_pred             EEEEeE--EecCCHHHHhhhheeccchhchhhhhheeeeeEecCCCccceEEEEEeccCCceEEEEEEEEEEcccccEEE
Confidence            567777  8999999999985 688886 78999999998 589999999999999988777789999999999999999


Q ss_pred             EEEEcCcccceeeeccccccccCCCcceeeEEEEEEEeecCCCcceEEEEEEEEe
Q 028067          115 MRIVGGDHRLKIIWNFSNFISTSSSKLQNYSSIVTVHPEVIDGRPGTLVIESFVV  169 (214)
Q Consensus       115 Y~iv~g~~~~~~~~~~~~~~~~~~~p~~~y~ati~v~p~~~~gs~~t~~~~s~~~  169 (214)
                      |++++|+...              ..++.|+.++++.|.+++||.++|++.|+..
T Consensus        82 y~viEGd~l~--------------~~~~~~~~~~k~~~~~~~g~i~k~t~eYe~~  122 (155)
T d1icxa_          82 YSIIGGEGLD--------------ESLEKISYESKILPGPDGGSIGKINVKFHTK  122 (155)
T ss_dssp             EEEEEETTSC--------------TTEEEEEEEEEEEECGGGCEEEEEEEEEEES
T ss_pred             EEEEeccccc--------------ccEEEEEEEEEEecCCCCCeEEEEEEEEEEC
Confidence            9999998644              2579999999999999889999999998874

>d2rera1 d.129.3.6 (A:1-155) Multifunctional enzyme TcmN, cyclase/aromatase domain {Streptomyces glaucescens [TaxId: 1907]}

class: Alpha and beta proteins (a+b)
fold: TBP-like
superfamily: Bet v1-like
family: oligoketide cyclase/dehydrase-like
domain: Multifunctional enzyme TcmN, cyclase/aromatase domain
species: Streptomyces glaucescens [TaxId: 1907]

Probab=99.74  E-value=1.3e-16  Score=122.35  Aligned_cols=151  Identities=11%  Similarity=0.061  Sum_probs=111.8

Q ss_pred             ceEEEEEeeeecCCHHHHHHHHhcCCCCCccCccceEEEEecCCCCCeEEEEEe--eCCCCcceEEEEEEEEeCCCcEEE
Q 028067           37 HQCSSSLVKHIKAPVHLVWSLVRRFDQPQKYKPFVSRCIVQGDLQIGSVREVNV--KSGLPATTSTERLELLDDEEHIFG  114 (214)
Q Consensus        37 ~~ve~sI~~~I~APae~VW~vi~Df~~l~~W~P~V~s~~veG~g~VGsvR~l~~--~~G~p~~~v~ErL~~~D~~~~~~~  114 (214)
                      .++|.||  +|+||+++||++++|+.++++|.|.+.++.+.+.++.|....+.+  ..+.. ....+....+++..+.+.
T Consensus         3 ~~~e~si--~I~Ap~~~Vw~~l~D~~~~~~w~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~   79 (155)
T d2rera1           3 ARTDNSI--VVNAPFELVWDVTNDIEAWPELFSEYAEAEILRQDGDGFDFRLKTRPDANGR-VWEWVSHRVPDKGSRTVR   79 (155)
T ss_dssp             EEEEEEE--EESSCHHHHHHHHTCGGGHHHHCSSEEEEEEEECCSSCEEEEEEECCCTTSC-CCEEEEEEEEEGGGTEEE
T ss_pred             CEEEEEE--EECCCHHHHHHHHHChhhHhhhhhhceEEEEeecCCCceEEEEEEEEeeeee-eEEEEEEEEEcCCccEEE
Confidence            5789999  999999999999999999999999999998643222333333333  22221 223333445666677777


Q ss_pred             EEEEcCcccceeeeccccccccCCCcceeeEEEEEEEeecCCCcceEEEEEEEEeeCCCCCCHHHHHHHHHHHHHHHHHH
Q 028067          115 MRIVGGDHRLKIIWNFSNFISTSSSKLQNYSSIVTVHPEVIDGRPGTLVIESFVVDVPDGNTKDETCYFVEALIKCNLKS  194 (214)
Q Consensus       115 Y~iv~g~~~~~~~~~~~~~~~~~~~p~~~y~ati~v~p~~~~gs~~t~~~~s~~~~~p~~~~~~~~~~~v~~~~~~gL~~  194 (214)
                      |....+                  .|+..+.+++++.|.+ +||.++|..++.. .++.......+.+.++.-+...|++
T Consensus        80 ~~~~~~------------------~~~~~~~~~w~~~~~~-~gT~v~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~L~~  139 (155)
T d2rera1          80 AHRVET------------------GPFAYMNLHWTYRAVA-GGTEMRWVQEFDM-KPGAPFDNAHMTAHLNTTTRANMER  139 (155)
T ss_dssp             EEESSC------------------TTEEEEEEEEEEEEET-TEEEEEEEEEEEE-CTTCSSCHHHHHHHHHHHHHHHHHH
T ss_pred             EEeecC------------------ccceeeEEEEEEeecC-CccEEEEEEEEEE-CCCccccHHHHHHHHHHHHHHHHHH
Confidence            776432                  3558899999999987 6887777776544 4444555667788899999999999


Q ss_pred             HHHHHhhhhhcCCCCC
Q 028067          195 LADVSEHLAVQDRTEP  210 (214)
Q Consensus       195 L~~~le~~a~~~~~~~  210 (214)
                      ||+.+|+.+.-.|+.|
T Consensus       140 lk~~~E~~~~~~~~~p  155 (155)
T d2rera1         140 IKKIIEDRHREGQRTP  155 (155)
T ss_dssp             HHHHHHHHHHHTTSCC
T ss_pred             HHHHHHhHHhhccCCC
Confidence            9999999999988877

>d2b79a1 d.129.3.9 (A:1-137) Hypothetical protein SMU440 {Streptococcus mutans [TaxId: 1309]}

class: Alpha and beta proteins (a+b)
fold: TBP-like
superfamily: Bet v1-like
family: Smu440-like
domain: Hypothetical protein SMU440
species: Streptococcus mutans [TaxId: 1309]

Probab=99.73  E-value=1.1e-16  Score=120.96  Aligned_cols=136  Identities=10%  Similarity=0.022  Sum_probs=107.4

Q ss_pred             eEEEEEeeeecCCHHHHHHHHhcCCCCCccCccceEEEEecCCCCCeEEEEEeeCCCCcceEEEEEEEEeCCCcEEEEEE
Q 028067           38 QCSSSLVKHIKAPVHLVWSLVRRFDQPQKYKPFVSRCIVQGDLQIGSVREVNVKSGLPATTSTERLELLDDEEHIFGMRI  117 (214)
Q Consensus        38 ~ve~sI~~~I~APae~VW~vi~Df~~l~~W~P~V~s~~veG~g~VGsvR~l~~~~G~p~~~v~ErL~~~D~~~~~~~Y~i  117 (214)
                      +++.||  .|+||+|+||++++|+.+++.|+|.+.+++..|+..+|+.+.+++.++.   .+..++++++| +++++|+.
T Consensus         2 ~~s~si--~I~Ap~e~Vw~~~~d~~~~~~W~~~~~~~~~~~~~~~G~~~~~~~~~~~---~~~~~v~~~~p-~~~~~~~~   75 (137)
T d2b79a1           2 KFSFEL--AVNTKKEDAWTYYSQVNQWFVWEGDLEQISLEGEFTTGQKGKMKMEDMP---ELAFTLVEVRE-NQCFSDLT   75 (137)
T ss_dssp             EEEEEE--EESSCHHHHHHHHHCGGGGGGTSTTEEEEEESSSSSTTCEEEEEETTSC---CEEEEECCCBT-TTEEEEEE
T ss_pred             ceEEEE--EEcCCHHHHHHHHhhhhhCccccCcccceeecccccceEEEEEEEcCCc---ceeeeeecccC-CcEEEEEe
Confidence            467788  9999999999999999999999999999988777679999999887664   57788999988 57888876


Q ss_pred             EcCcccceeeeccccccccCCCcceeeEEEEEEEeecCCCcceEEEEEEEEeeCCCCCCHHHHHHHHHHHHHHHHHHHHH
Q 028067          118 VGGDHRLKIIWNFSNFISTSSSKLQNYSSIVTVHPEVIDGRPGTLVIESFVVDVPDGNTKDETCYFVEALIKCNLKSLAD  197 (214)
Q Consensus       118 v~g~~~~~~~~~~~~~~~~~~~p~~~y~ati~v~p~~~~gs~~t~~~~s~~~~~p~~~~~~~~~~~v~~~~~~gL~~L~~  197 (214)
                      ..                    |...+.....+.+.++++|.++|...+.  .+........+.+.++..+...|++||+
T Consensus        76 ~~--------------------~~~~~~~~~~~~~~~~g~t~vt~~~~~~--g~~~~~~~~~~~~~v~~~~~~~l~~LK~  133 (137)
T d2b79a1          76 AT--------------------PFGNVLFEHEILENPDGTISLRHSVSLT--DSDTTEEALAFLKQIFADVPESVGKLKQ  133 (137)
T ss_dssp             EE--------------------TTEEEEEEEEEEECTTSCEEEEEEEEEC--SCSCCTTHHHHHHHHHTTHHHHHHHHHH
T ss_pred             cc--------------------cceeeeeEEEEccCCCCcEEEEEEEecc--cccchHHHHHHHHHHHHHHHHHHHHHHH
Confidence            43                    3467788888998886666566554332  2333344456778888999999999999


Q ss_pred             HHhh
Q 028067          198 VSEH  201 (214)
Q Consensus       198 ~le~  201 (214)
                      ++|.
T Consensus       134 ~~Ea  137 (137)
T d2b79a1         134 ILET  137 (137)
T ss_dssp             HHTC
T ss_pred             HhcC
Confidence            9883

>d2d4ra1 d.129.3.6 (A:2-147) Hypothetical protein TTHA0849 {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a+b)
fold: TBP-like
superfamily: Bet v1-like
family: oligoketide cyclase/dehydrase-like
domain: Hypothetical protein TTHA0849
species: Thermus thermophilus [TaxId: 274]

Probab=99.69  E-value=4.5e-16  Score=118.64  Aligned_cols=144  Identities=17%  Similarity=0.113  Sum_probs=106.1

Q ss_pred             ceEEEEEeeeecCCHHHHHHHHhcCCCCCccCccceEEEEecCCCCCeEEEEEee-CCCCcceEEEEEEEEeCCCcEEEE
Q 028067           37 HQCSSSLVKHIKAPVHLVWSLVRRFDQPQKYKPFVSRCIVQGDLQIGSVREVNVK-SGLPATTSTERLELLDDEEHIFGM  115 (214)
Q Consensus        37 ~~ve~sI~~~I~APae~VW~vi~Df~~l~~W~P~V~s~~veG~g~VGsvR~l~~~-~G~p~~~v~ErL~~~D~~~~~~~Y  115 (214)
                      ++++.++  +|+||+++||++++|+.+++.|+|.|.++++.+.++.+....++.. .+.+ ...+.+++ +++.++.+.|
T Consensus         1 p~v~~~~--~I~ap~~~V~~~l~D~~~~~~w~p~~~~~~il~~~~~~~~~~~~~~~~~~~-~~~~~~~~-~~~~~~~i~~   76 (146)
T d2d4ra1           1 PEVRAER--YIPAPPERVYRLAKDLEGLKPYLKEVESLEVVAREGARTRSRWVAVAMGKK-VRWLEEEE-WDDENLRNRF   76 (146)
T ss_dssp             CEEEEEE--EESSCHHHHHHHHHCHHHHGGGCTTEEEEEEEEEETTEEEEEEEEEETTEE-EEEEEEEE-EETTTTEEEE
T ss_pred             CEEEEEE--EECCCHHHHHHHHHChhhHHhhccccEEEEEEEecCCcceEEEEEEeeeee-EEEEEEEE-EcCCCCEEEE
Confidence            4789999  9999999999999999999999999999986321112222222222 2221 24555555 4556899999


Q ss_pred             EEEcCcccceeeeccccccccCCCcceeeEEEEEEEeecCCCcceEEEEEEEEee-CCCCCCHHHHHHHHHHHHHHHHHH
Q 028067          116 RIVGGDHRLKIIWNFSNFISTSSSKLQNYSSIVTVHPEVIDGRPGTLVIESFVVD-VPDGNTKDETCYFVEALIKCNLKS  194 (214)
Q Consensus       116 ~iv~g~~~~~~~~~~~~~~~~~~~p~~~y~ati~v~p~~~~gs~~t~~~~s~~~~-~p~~~~~~~~~~~v~~~~~~gL~~  194 (214)
                      ++.+|                   ++..+.+++++.|.+ +||.++|...+...- ++.......+...++..+++.|++
T Consensus        77 ~~~~g-------------------~~~~~~g~w~l~~~~-~gT~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  136 (146)
T d2d4ra1          77 FSPEG-------------------DFDRYEGTWVFLPEG-EGTRVVLTLTYELTIPIFGGLLRKLVQKLMQENVESLLKG  136 (146)
T ss_dssp             EEEEE-------------------SCSEEEEEEEEEECS-SSEEEEEEEEEECCCTTTTTTTHHHHHHHHHHHHHHHHHH
T ss_pred             EEccC-------------------CcceEEEEEEEEecC-CceEEEEEEEEEEcCccHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99886                   336899999999987 678788877654322 245566778888899999999999


Q ss_pred             HHHHHhhhhh
Q 028067          195 LADVSEHLAV  204 (214)
Q Consensus       195 L~~~le~~a~  204 (214)
                      |+++++.+++
T Consensus       137 l~~~~~~~ss  146 (146)
T d2d4ra1         137 LEERVLAASS  146 (146)
T ss_dssp             HHHHHHHTTC
T ss_pred             HHHHHHhhcC
Confidence            9999887653

>d2ns9a1 d.129.3.10 (A:10-156) Hypothetical protein APE2225 {Aeropyrum pernix [TaxId: 56636]}

class: Alpha and beta proteins (a+b)
fold: TBP-like
superfamily: Bet v1-like
family: CoxG-like
domain: Hypothetical protein APE2225
species: Aeropyrum pernix [TaxId: 56636]

Probab=99.56  E-value=6.8e-14  Score=104.35  Aligned_cols=144  Identities=10%  Similarity=0.046  Sum_probs=95.2

Q ss_pred             ceEEEEEeeeecCCHHHHHHHHhcCCCCCccCccceEEEEecCCCCCeEEEEEeeCCCCcceEEEEEEEEeCCCcEEEEE
Q 028067           37 HQCSSSLVKHIKAPVHLVWSLVRRFDQPQKYKPFVSRCIVQGDLQIGSVREVNVKSGLPATTSTERLELLDDEEHIFGMR  116 (214)
Q Consensus        37 ~~ve~sI~~~I~APae~VW~vi~Df~~l~~W~P~V~s~~veG~g~VGsvR~l~~~~G~p~~~v~ErL~~~D~~~~~~~Y~  116 (214)
                      -+++.||  +|+|||++||++++|+.+++.|+|.+++++...+. .+...........-...........++... ..+.
T Consensus         3 ~k~e~si--~I~ap~e~Vw~~l~D~~~~~~w~p~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~   78 (147)
T d2ns9a1           3 VRYEGSF--EVSKTPEEVFEFLTDPKRFSRAFPGFKSVEVEDGS-FTIELRLSLGPLRGDARVRASFEDLEKPSK-ATVK   78 (147)
T ss_dssp             EEEEEEE--EESSCHHHHHHHHTCHHHHGGGSTTEEEEEEETTE-EEEEEEEESSSSEEEEEEEEEEEEEETTTE-EEEE
T ss_pred             EEEEEEE--EEcCCHHHHHHHHhCHhhhhhcccchhheeecccc-cceeEEEEEEEEeeEeeeeeeeeeecCCcc-eeEE
Confidence            3789999  99999999999999999999999999998754321 122222221110000123444555555433 3433


Q ss_pred             EEcCcccceeeeccccccccCCCcceeeEEEEEEEeecCCCcceEEEEEEEEeeCCCCCCHHHHHHHHHHHHHHHHHHHH
Q 028067          117 IVGGDHRLKIIWNFSNFISTSSSKLQNYSSIVTVHPEVIDGRPGTLVIESFVVDVPDGNTKDETCYFVEALIKCNLKSLA  196 (214)
Q Consensus       117 iv~g~~~~~~~~~~~~~~~~~~~p~~~y~ati~v~p~~~~gs~~t~~~~s~~~~~p~~~~~~~~~~~v~~~~~~gL~~L~  196 (214)
                      ......                .....+..++.+.|.+ +||.++|..+...-.+-.......+...++..+.+.|++|+
T Consensus        79 ~~~~~~----------------~~~~~~~~~~~l~~~~-~gt~v~~~~~~~~~g~~~~l~~~~v~~~~~~~~~~~l~~lk  141 (147)
T d2ns9a1          79 GSGRGA----------------GSTLDFTLRFAVEPSG-GGSRVSWVFEGNVGGLAASMGGRVLDSLARRMINDVISGVK  141 (147)
T ss_dssp             EEEECS----------------SEEEEEEEEEEEEEET-TEEEEEEEEEEEEEEGGGGSCHHHHHHHHHHHHHHHHHHHH
T ss_pred             Eeeecc----------------ccceeeEEEEEEEecC-CCcEEEEEEEEEeCccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            333211                2346888999999987 77878888776543222334456678888999999999999


Q ss_pred             HHHhh
Q 028067          197 DVSEH  201 (214)
Q Consensus       197 ~~le~  201 (214)
                      ++++.
T Consensus       142 ~~~~~  146 (147)
T d2ns9a1         142 RELGE  146 (147)
T ss_dssp             HHHTC
T ss_pred             HHHhc
Confidence            98875

>d1vjha_ d.129.3.1 (A:) Hypothetical protein At1G24000 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a+b)
fold: TBP-like
superfamily: Bet v1-like
family: Pathogenesis-related protein 10 (PR10)-like
domain: Hypothetical protein At1G24000
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=99.33  E-value=3.5e-11  Score=92.18  Aligned_cols=88  Identities=13%  Similarity=0.150  Sum_probs=72.1

Q ss_pred             ceEEEEEeeeecCCHHHHHHHHhcCCCCCccCccceEEEEecCCCCCeEEEEEeeCCCCcceEEEEEEEEeCCCcEEEEE
Q 028067           37 HQCSSSLVKHIKAPVHLVWSLVRRFDQPQKYKPFVSRCIVQGDLQIGSVREVNVKSGLPATTSTERLELLDDEEHIFGMR  116 (214)
Q Consensus        37 ~~ve~sI~~~I~APae~VW~vi~Df~~l~~W~P~V~s~~veG~g~VGsvR~l~~~~G~p~~~v~ErL~~~D~~~~~~~Y~  116 (214)
                      ++++.++  +|++||+++|.++.+-..              |+            .+   ...+||++++|+++++++|+
T Consensus         5 gkl~~ev--eik~~a~kf~~~~~~~~~--------------~~------------~~---~~~KerVe~vD~en~sity~   53 (120)
T d1vjha_           5 GALSVKF--DVKCPADKFFSAFVEDTN--------------RP------------FE---KNGKTEIEAVDLVKKTMTIQ   53 (120)
T ss_dssp             EEEEEEE--EESSCHHHHHHHHHHHTT--------------SC------------SS---TTCEEEEEEEETTTTEEEEE
T ss_pred             eEEEEEE--EecCCHHHHHHHhhhccC--------------CC------------CC---cccEEEEEEEcCCCCEEEEE
Confidence            5788889  999999999999964221              11            11   24689999999999999999


Q ss_pred             EEcCcccceeeeccccccccCCCcceeeEEEEEEEeecCC-CcceEEEEEEEEee
Q 028067          117 IVGGDHRLKIIWNFSNFISTSSSKLQNYSSIVTVHPEVID-GRPGTLVIESFVVD  170 (214)
Q Consensus       117 iv~g~~~~~~~~~~~~~~~~~~~p~~~y~ati~v~p~~~~-gs~~t~~~~s~~~~  170 (214)
                      +++|+...               .+++|.+++++.|.+++ ||.++|+..|+...
T Consensus        54 vieGdvl~---------------~yksf~~~i~~~p~~~g~gsi~kwt~eYek~~   93 (120)
T d1vjha_          54 MSGSEIQK---------------YFKTLKGSIAVTPIGVGDGSHVVWTFHFEKVH   93 (120)
T ss_dssp             EECTTGGG---------------TEEEEEEEEEEEECSSSSCEEEEEEEEEEESS
T ss_pred             EEeecccc---------------ceeEEEEEEEEEecCCCCceEEEEEEEEEeCC
Confidence            99998532               57999999999998765 89999999998864

>d2qpva1 d.129.3.8 (A:1-133) Uncharacterized protein Atu1531 {Agrobacterium tumefaciens [TaxId: 358]}

class: Alpha and beta proteins (a+b)
fold: TBP-like
superfamily: Bet v1-like
family: Atu1531-like
domain: Uncharacterized protein Atu1531
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=99.26  E-value=4.6e-11  Score=91.58  Aligned_cols=130  Identities=11%  Similarity=0.080  Sum_probs=86.7

Q ss_pred             CceEEEEEeeeecCCHHHHHHHHhcCCCCCccCccceEEEEecCCCCCeEEEEEeeCCCCcceEEEEEEEEeCCCcEEEE
Q 028067           36 DHQCSSSLVKHIKAPVHLVWSLVRRFDQPQKYKPFVSRCIVQGDLQIGSVREVNVKSGLPATTSTERLELLDDEEHIFGM  115 (214)
Q Consensus        36 ~~~ve~sI~~~I~APae~VW~vi~Df~~l~~W~P~V~s~~veG~g~VGsvR~l~~~~G~p~~~v~ErL~~~D~~~~~~~Y  115 (214)
                      -.....+|  +|++|+++||++++||.++++|+|.+.+++..++   +.  .+....+.  ..++-++++..+ ++.+.|
T Consensus         4 ~~~~~~~i--~I~~p~~~v~~~~~d~~~~p~w~~~l~~~~~~~~---~~--~~~~~~~~--G~~~~~i~~~~p-~~~i~w   73 (133)
T d2qpva1           4 MQSRIIHL--SVEKPWAEVYDFAANPGNMPRWAAGLAGGLEADG---ED--WIAKGGPL--GEVRVNFAPHNE-FGVIDH   73 (133)
T ss_dssp             CCEEEEEE--EESSCHHHHHHHHHCGGGGGGTCGGGTTCCEEET---TE--EEEECSSS--CEEEEEECCCCS-SCBCCE
T ss_pred             ceEEEEEE--EECCCHHHHHHHHhChhhcchhhhccceeEEecC---Cc--EEEEecCC--CcEEEEEEEcCC-CCEEEE
Confidence            34556677  9999999999999999999999999988764432   22  33332221  246667777555 788999


Q ss_pred             EEEcCcccceeeeccccccccCCCcceeeEEEEEEEeecCCCcceEEEEEEEEeeCCCCCCHHHHHHHHHHHHHHHHHHH
Q 028067          116 RIVGGDHRLKIIWNFSNFISTSSSKLQNYSSIVTVHPEVIDGRPGTLVIESFVVDVPDGNTKDETCYFVEALIKCNLKSL  195 (214)
Q Consensus       116 ~iv~g~~~~~~~~~~~~~~~~~~~p~~~y~ati~v~p~~~~gs~~t~~~~s~~~~~p~~~~~~~~~~~v~~~~~~gL~~L  195 (214)
                      ++..++.                   ..-..++++.|.+ .|+.++++   .  ..|++.....+.. .....+..|++|
T Consensus        74 ~~~~~~~-------------------~~g~v~fr~~~~g-~gt~v~~~---~--~~ppg~~~~~~~~-~~~~v~~dL~rl  127 (133)
T d2qpva1          74 VVTLPDG-------------------LKVYNALRVTPNG-SGTEVSFT---L--LRLEGMTDEDFEQ-DASAITADLEML  127 (133)
T ss_dssp             EEECTTS-------------------CEEEEEEEEEEET-TEEEEEEE---E--ECCTTCCHHHHHH-HHHHHHHHHHHH
T ss_pred             EEecCCC-------------------CEEEEEEEEccCC-CeEEEEEE---E--EeCCCCchHHHHH-HHHHHHHHHHHH
Confidence            9987632                   1233456666655 44433322   2  2355666655544 466778999999


Q ss_pred             HHHHhh
Q 028067          196 ADVSEH  201 (214)
Q Consensus       196 ~~~le~  201 (214)
                      |+.+|.
T Consensus       128 K~l~Ea  133 (133)
T d2qpva1         128 KSLLEA  133 (133)
T ss_dssp             HHHHHC
T ss_pred             HHHhcC
Confidence            999983

>d2pcsa1 d.129.3.10 (A:1-147) Hypothetical protein GKP20 {Geobacillus kaustophilus [TaxId: 1462]}

class: Alpha and beta proteins (a+b)
fold: TBP-like
superfamily: Bet v1-like
family: CoxG-like
domain: Hypothetical protein GKP20
species: Geobacillus kaustophilus [TaxId: 1462]

Probab=99.08  E-value=1e-09  Score=82.47  Aligned_cols=142  Identities=12%  Similarity=0.061  Sum_probs=88.1

Q ss_pred             EEEEEeeeecCCHHHHHHHHhcCCCCCccCccceEEEEecCCCCCeEEEEEeeCCC-Cc-ceEEEEEEEEeCCCcEEEEE
Q 028067           39 CSSSLVKHIKAPVHLVWSLVRRFDQPQKYKPFVSRCIVQGDLQIGSVREVNVKSGL-PA-TTSTERLELLDDEEHIFGMR  116 (214)
Q Consensus        39 ve~sI~~~I~APae~VW~vi~Df~~l~~W~P~V~s~~veG~g~VGsvR~l~~~~G~-p~-~~v~ErL~~~D~~~~~~~Y~  116 (214)
                      ...++  +|++|+|+||+++.|+.+++.|.|.|.++++.+++.-  .-.+++.-|. .. -..+.++...++..+ ....
T Consensus         3 ~s~~~--~i~~~~e~v~~~l~D~~~~~~~~Pg~~~~~~~~~~~~--~~~~~~~~g~~~~~~~~~~~~~~~~~~~~-~~~~   77 (147)
T d2pcsa1           3 GNGSI--ELKGTVEEVWSKLMDPSILSKCIMGCKSLELIGEDKY--KADLQIGIAAVKGKYDAIIEVTDIKPPYH-YKLL   77 (147)
T ss_dssp             EEEEE--EEESCHHHHHHHHTCHHHHHHHSTTEEEEEEEETTEE--EEEEEECCGGGCEEEEEEEEEEEEETTTE-EEEE
T ss_pred             CCceE--EeCCCHHHHHHHHcCHHHHHhhCcchhhceecCCCEE--EEEEEEeecceeeeeEEEEEEeccCcccc-eeEe
Confidence            45678  9999999999999999999999999999876544311  1112222121 00 134556667776533 3433


Q ss_pred             EEcCcccceeeeccccccccCCCcceeeEEEEEEEeecCCCcceEEEEEEEEeeCCCCCCHHHHHHHHHHHHHHHHHHHH
Q 028067          117 IVGGDHRLKIIWNFSNFISTSSSKLQNYSSIVTVHPEVIDGRPGTLVIESFVVDVPDGNTKDETCYFVEALIKCNLKSLA  196 (214)
Q Consensus       117 iv~g~~~~~~~~~~~~~~~~~~~p~~~y~ati~v~p~~~~gs~~t~~~~s~~~~~p~~~~~~~~~~~v~~~~~~gL~~L~  196 (214)
                      ......                .+.....+...+.+.++++|.++|...+....+-.......+...++.++.+-+++|+
T Consensus        78 ~~~~~~----------------~~~~~~~~~~~~~~~~~~~T~v~~~~~~~~~g~l~~l~~~li~~~~~~~~~~f~~~~~  141 (147)
T d2pcsa1          78 VNGEGG----------------PGFVNAEGVIDLTPINDECTQLTYTYSAEVGGKVAAIGQRMLGGVAKLLISDFFKKIQ  141 (147)
T ss_dssp             EEEEET----------------TEEEEEEEEEEEEESSSSEEEEEEEEEEEEESGGGGGCHHHHHHHHHHHHHHHHHHHH
T ss_pred             eccccc----------------cchhcceeEEeeecccCCcEEEEEEEEEEECcHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            322111                1235566666677777678888888876542222223344566666777777777777


Q ss_pred             HHHhh
Q 028067          197 DVSEH  201 (214)
Q Consensus       197 ~~le~  201 (214)
                      +.+++
T Consensus       142 ~~l~~  146 (147)
T d2pcsa1         142 KEIAK  146 (147)
T ss_dssp             HHHHH
T ss_pred             HHhhc
Confidence            77765

>d1t17a_ d.129.3.6 (A:) Hypothetical protein CC1736 {Caulobacter crescentus [TaxId: 155892]}

class: Alpha and beta proteins (a+b)
fold: TBP-like
superfamily: Bet v1-like
family: oligoketide cyclase/dehydrase-like
domain: Hypothetical protein CC1736
species: Caulobacter crescentus [TaxId: 155892]

Probab=99.03  E-value=4.1e-09  Score=80.75  Aligned_cols=135  Identities=13%  Similarity=0.124  Sum_probs=84.2

Q ss_pred             EeeeecCCHHHHHHHHhcCCCCCccCccceEEEE-e-cCCCCCeEEEEEeeCCC--CcceEEEEEEEEeCCCcEEEEEEE
Q 028067           43 LVKHIKAPVHLVWSLVRRFDQPQKYKPFVSRCIV-Q-GDLQIGSVREVNVKSGL--PATTSTERLELLDDEEHIFGMRIV  118 (214)
Q Consensus        43 I~~~I~APae~VW~vi~Df~~l~~W~P~V~s~~v-e-G~g~VGsvR~l~~~~G~--p~~~v~ErL~~~D~~~~~~~Y~iv  118 (214)
                      +++.|++||++||++|.|+.++++|.|.|.++++ + .+..-+......+..|.  .......+. ..++.++.+.....
T Consensus         6 ~~~vi~~~~e~vf~vV~Dve~Yp~FlP~c~~~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~   84 (148)
T d1t17a_           6 VTKVLPYTPDQLFELVGDVDAYPKFVPWITGMRTWNGRVDGAVSTVDAEAQVGFSFLREKFATRV-RRDKDARSIDVSLL   84 (148)
T ss_dssp             EEEEESSCTHHHHHHHTTTTCCSSCCSSCCCCCEEEEEEETTEEEEEEEEECSTTSSCCEEEEEE-EEETTTCEEEEEES
T ss_pred             EEEEeCCCHHHHHHHHHHHHhhhhhccccCccEEEecccccccceeeEEEEEEeeeeEEEEEEEe-eecCCceEEEEecc
Confidence            4558999999999999999999999999999865 3 22223333333333221  112333333 35565677776665


Q ss_pred             cCcccceeeeccccccccCCCcceeeEEEEEEEeecCCCcceEEEEEEEEeeCCCCCCHHHHHHHHHHHHHHHHHHHHHH
Q 028067          119 GGDHRLKIIWNFSNFISTSSSKLQNYSSIVTVHPEVIDGRPGTLVIESFVVDVPDGNTKDETCYFVEALIKCNLKSLADV  198 (214)
Q Consensus       119 ~g~~~~~~~~~~~~~~~~~~~p~~~y~ati~v~p~~~~gs~~t~~~~s~~~~~p~~~~~~~~~~~v~~~~~~gL~~L~~~  198 (214)
                      +|                   |++...+..++.|.+ +||.++|.+.+.   .+.......+..+++.+.+..++++.++
T Consensus        85 ~g-------------------~f~~l~~~W~f~~~~-~~T~V~~~l~fe---~~~~l~~~~~~~~~~~~~~~~i~aF~~R  141 (148)
T d1t17a_          85 YG-------------------PFKRLNNGWRFMPEG-DATRVEFVIEFA---FKSALLDAMLAANVDRAAGKLIACFEAR  141 (148)
T ss_dssp             ST-------------------TSSCEEEEEEEEEET-TEEEEEEEEEEC---CSCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             Cc-------------------hhhhcccceeeccCC-CceEEEEEEEEE---ECCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            54                   458889999999987 678888877653   3333223334344444444444444554


Q ss_pred             Hhh
Q 028067          199 SEH  201 (214)
Q Consensus       199 le~  201 (214)
                      +++
T Consensus       142 a~~  144 (148)
T d1t17a_         142 AQQ  144 (148)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            444

>d1xuva_ d.129.3.5 (A:) Hypothetical protein MM0500 {Methanosarcina mazei [TaxId: 2209]}

class: Alpha and beta proteins (a+b)
fold: TBP-like
superfamily: Bet v1-like
family: AHSA1 domain
domain: Hypothetical protein MM0500
species: Methanosarcina mazei [TaxId: 2209]

Probab=99.01  E-value=6.8e-09  Score=80.31  Aligned_cols=147  Identities=10%  Similarity=-0.082  Sum_probs=88.4

Q ss_pred             CCCceEEEEEeeeecCCHHHHHHHHhcCCCCCccCc-cceEE-EEecCCCCCeEEEEEe--eCCCCcceEEEEEEEEeCC
Q 028067           34 VHDHQCSSSLVKHIKAPVHLVWSLVRRFDQPQKYKP-FVSRC-IVQGDLQIGSVREVNV--KSGLPATTSTERLELLDDE  109 (214)
Q Consensus        34 ~~~~~ve~sI~~~I~APae~VW~vi~Df~~l~~W~P-~V~s~-~veG~g~VGsvR~l~~--~~G~p~~~v~ErL~~~D~~  109 (214)
                      +++..+.-+.  +|+||+++||+++.|...+..|.+ .--.+ ..+.+..+|....+.+  .+|. .....-+++++++.
T Consensus         9 ~~~~~i~i~r--~i~Ap~e~Vw~a~tdpe~l~~W~~p~~~~~~~~~~d~~~gg~~~~~~~~~~g~-~~~~~g~v~~i~~~   85 (163)
T d1xuva_           9 PGKQEIIITR--EFDAPRELVFKAFTDPDLYTQWIGPRGFTTALKIFEPKNGGSWQYIQKDPEGN-EYAFHGVNHDVTEP   85 (163)
T ss_dssp             TTCSEEEEEE--EESSCHHHHHHHHHCHHHHTTTCSSTTCEEEEEEECCSTTCEEEEEEECTTSC-EEEEEEEEEEEETT
T ss_pred             CCCceEEEEE--EeCCCHHHHHHHHcChHHhhhccCCCCccceeeeeeceeCceEEEEEEecCCC-ceEEEEEEEEecCC
Confidence            4555666666  899999999999999999999974 22223 2344544555544433  3553 23577889999995


Q ss_pred             CcEEEEEEEcCcccceeeeccccccccCCCcceeeEEEEEEEeecCCCcceEEEEEEEEeeCCCCCCHHHHHHHHHHHHH
Q 028067          110 EHIFGMRIVGGDHRLKIIWNFSNFISTSSSKLQNYSSIVTVHPEVIDGRPGTLVIESFVVDVPDGNTKDETCYFVEALIK  189 (214)
Q Consensus       110 ~~~~~Y~iv~g~~~~~~~~~~~~~~~~~~~p~~~y~ati~v~p~~~~gs~~t~~~~s~~~~~p~~~~~~~~~~~v~~~~~  189 (214)
                       +++.|+.--.+.+.               +-.....++.+++.+++++.+++  . ..+..++. .+..+...+..-..
T Consensus        86 -~rl~~tw~~~~~~~---------------~~~~~~v~~~~e~~~~g~t~~~~--~-~~~~~~~~-~~~~~~~g~~~GW~  145 (163)
T d1xuva_          86 -ERIISTFEFEGLPE---------------KGHVILDTARFEALPGDRTKLTS--H-SVFQTIED-RDGMLQSGMEEGIN  145 (163)
T ss_dssp             -TEEEEEEEETTSSS---------------SCCCEEEEEEEEEETTTEEEEEE--E-EECSSHHH-HHHHHHTTHHHHHH
T ss_pred             -CEEEEEEeccCCCC---------------CCCcEEEEEEEEEeCCCcEEEEE--E-EcCCCHHH-HHHHHHHHHHHHHH
Confidence             66777764322111               22456788999988744433222  2 22211111 11122223344467


Q ss_pred             HHHHHHHHHHhhhh
Q 028067          190 CNLKSLADVSEHLA  203 (214)
Q Consensus       190 ~gL~~L~~~le~~a  203 (214)
                      ..|++|++++|++-
T Consensus       146 ~~L~~L~~~le~~~  159 (163)
T d1xuva_         146 DSYERLDELLEKMK  159 (163)
T ss_dssp             HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhcc
Confidence            78999999999864

>d2il5a1 d.129.3.5 (A:5-168) Hypothetical protein SA2116 {Staphylococcus aureus [TaxId: 1280]}

class: Alpha and beta proteins (a+b)
fold: TBP-like
superfamily: Bet v1-like
family: AHSA1 domain
domain: Hypothetical protein SA2116
species: Staphylococcus aureus [TaxId: 1280]

Probab=98.89  E-value=1.1e-07  Score=73.44  Aligned_cols=148  Identities=14%  Similarity=0.021  Sum_probs=87.9

Q ss_pred             CceEEEEEeeeecCCHHHHHHHHhcCCCCCccCc-c-ceEEEEecCCCCCeEEEEEee--CCCCcceEEEEEEEEeCCCc
Q 028067           36 DHQCSSSLVKHIKAPVHLVWSLVRRFDQPQKYKP-F-VSRCIVQGDLQIGSVREVNVK--SGLPATTSTERLELLDDEEH  111 (214)
Q Consensus        36 ~~~ve~sI~~~I~APae~VW~vi~Df~~l~~W~P-~-V~s~~veG~g~VGsvR~l~~~--~G~p~~~v~ErL~~~D~~~~  111 (214)
                      +.+.+-.+++.|+||+++||+++.|...+..|.+ . ......+.+..+|..-.+.+.  +|. ...+.-+++++++ ++
T Consensus         4 ~~~~~i~ier~i~Ap~e~Vw~a~tdpe~l~~W~~p~~~~~~~~~~d~~~Gg~~~~~~~~~~g~-~~~~~g~v~e~~p-~~   81 (164)
T d2il5a1           4 NEHVEVEIEKLYKFSPELVYEAWTKKDLLKQWFMTSARTNKEIEADVKEGGKYRIVDQQRNGK-VNVIEGIYESLVM-DE   81 (164)
T ss_dssp             CEEEEEEEEEEESSCHHHHHHHTTCHHHHTTTSSSCTTTEEEEEECCSTTCEEEEEEECGGGC-EEEEEEEEEEEET-TT
T ss_pred             CCcEEEEEEEEECCCHHHHHHHHcCHHHHhCcccCCCccceEEEeecccCceEEEEEecCCcc-eEEEEEEEEEEcC-CC
Confidence            3445556666999999999999999999999874 2 222223455556665444433  343 2346778999999 57


Q ss_pred             EEEEEEEcCcccceeeeccccccccCCCcceeeEEEEEEEeecCCCcceEEEEEEEEeeCCCCCCHHHHH-------HHH
Q 028067          112 IFGMRIVGGDHRLKIIWNFSNFISTSSSKLQNYSSIVTVHPEVIDGRPGTLVIESFVVDVPDGNTKDETC-------YFV  184 (214)
Q Consensus       112 ~~~Y~iv~g~~~~~~~~~~~~~~~~~~~p~~~y~ati~v~p~~~~gs~~t~~~~s~~~~~p~~~~~~~~~-------~~v  184 (214)
                      ++.|+.--.+                 .+-.....++.+.+..++||.++++...+. ............       ..+
T Consensus        82 ~i~~t~~~~~-----------------~~~~~~~~~~~~~e~~~ggT~vt~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~  143 (164)
T d2il5a1          82 YVKMTIGMPG-----------------LSETQDVIEVEFFERETGGTQMLFYYRSLV-EKERRFTNLEYKQKKKEYHDAM  143 (164)
T ss_dssp             EEEEEESCC-------------------CCCCEEEEEEEEECSSSSEEEEEEEEEEE-CCCTTCCHHHHHHHHHHHHHHH
T ss_pred             EEEEEEeccC-----------------CCCCceEEEEEEEEcCCCCEEEEEEEeecC-hhHhhhhhhhhhhhHHHHHHHH
Confidence            7788762111                 111344566667666668887777665543 212222222221       223


Q ss_pred             HHHHHHHHHHHHHHHhhhh
Q 028067          185 EALIKCNLKSLADVSEHLA  203 (214)
Q Consensus       185 ~~~~~~gL~~L~~~le~~a  203 (214)
                      ..=+...|+.|++.||...
T Consensus       144 ~~Gw~~~l~~L~~~lE~g~  162 (164)
T d2il5a1         144 VHGFELMFDKMYHVIETST  162 (164)
T ss_dssp             HHHHHHHHHHHHHHHHTTS
T ss_pred             HHHHHHHHHHHHHHHhccC
Confidence            3335566778888887643

>d1z94a1 d.129.3.5 (A:2-144) Hypothetical protein CV1439 {Chromobacterium violaceum [TaxId: 536]}

class: Alpha and beta proteins (a+b)
fold: TBP-like
superfamily: Bet v1-like
family: AHSA1 domain
domain: Hypothetical protein CV1439
species: Chromobacterium violaceum [TaxId: 536]

Probab=98.82  E-value=1.3e-07  Score=71.12  Aligned_cols=135  Identities=19%  Similarity=0.145  Sum_probs=83.6

Q ss_pred             eEEEEEeeeecCCHHHHHHHHhcCCCCCccCc-cceEE-EEecCCCCCeEEEEEee---CCCCcceEEEEEEEEeCCCcE
Q 028067           38 QCSSSLVKHIKAPVHLVWSLVRRFDQPQKYKP-FVSRC-IVQGDLQIGSVREVNVK---SGLPATTSTERLELLDDEEHI  112 (214)
Q Consensus        38 ~ve~sI~~~I~APae~VW~vi~Df~~l~~W~P-~V~s~-~veG~g~VGsvR~l~~~---~G~p~~~v~ErL~~~D~~~~~  112 (214)
                      .++-+.  +|+||+++||++++|...+.+|.+ .-..+ ..+++..+|..-.+.+.   +|. ...+.=+++++++. ++
T Consensus         3 ti~~~r--~i~ap~e~Vw~a~Tdp~~~~~W~~p~~~~~~~~~~d~~~Gg~~~~~~~~~~~g~-~~~~~g~v~~~~p~-~~   78 (143)
T d1z94a1           3 TIRLHR--VLSAPPERVYRAFLDPLALAKWLPPEGFVCKVLEHDARVGGAYKMEFLAFASGQ-KHAFGGRYLELVPG-ER   78 (143)
T ss_dssp             CEEEEE--EESSCHHHHHHHTTCHHHHHHHSSCTTEEEEEEEECCSTTCEEEEEEEETTTCC-EEEEEEEEEEEETT-TE
T ss_pred             EEEEEE--EECCCHHHHHHHhcCHHHHhhhhCCCCccceeEeeccccceeEEEEEeeCCCCc-EEEEEEEEEEecCC-eE
Confidence            344444  789999999999999999999864 22222 34566667766544432   332 23456689999994 66


Q ss_pred             EEEEEEcCcccceeeeccccccccCCCcceeeEEEEEEEeecCCCcceEEEEEEEEeeCCCCCCHHHHHHHHHHHHHHHH
Q 028067          113 FGMRIVGGDHRLKIIWNFSNFISTSSSKLQNYSSIVTVHPEVIDGRPGTLVIESFVVDVPDGNTKDETCYFVEALIKCNL  192 (214)
Q Consensus       113 ~~Y~iv~g~~~~~~~~~~~~~~~~~~~p~~~y~ati~v~p~~~~gs~~t~~~~s~~~~~p~~~~~~~~~~~v~~~~~~gL  192 (214)
                      +.|+....+...               | .....++++.+.+ +||.++++..    ..++....+    .+..=....|
T Consensus        79 i~~t~~~~~~~~---------------~-~~~~v~~~l~~~~-~gT~lt~~~~----~~~~~~~~~----~~~~GW~~~l  133 (143)
T d1z94a1          79 IRYTDRFDDAGL---------------P-GDMITTITLAPLS-CGADLSIVQE----GIPDAIPPE----NCYLGWQQSL  133 (143)
T ss_dssp             EEEEEEESCCC-------------------CEEEEEEEEEET-TEEEEEEEEE----CCCTTSCHH----HHHHHHHHHH
T ss_pred             EEEEEeccCCCC---------------C-CcEEEEEEEEEcC-CCEEEEEEEE----cCCChhHHH----HHHHHHHHHH
Confidence            788764332211               1 3456788899987 5665554432    234433322    2234456778


Q ss_pred             HHHHHHHhh
Q 028067          193 KSLADVSEH  201 (214)
Q Consensus       193 ~~L~~~le~  201 (214)
                      +.|++.+|+
T Consensus       134 ~~L~~~lE~  142 (143)
T d1z94a1         134 KQLAALVEP  142 (143)
T ss_dssp             HHHHHHHSC
T ss_pred             HHHHHHHcC
Confidence            999999875

>d1xfsa_ d.129.3.5 (A:) Hypothetical protein NE0264 {Nitrosomonas europaea [TaxId: 915]}

class: Alpha and beta proteins (a+b)
fold: TBP-like
superfamily: Bet v1-like
family: AHSA1 domain
domain: Hypothetical protein NE0264
species: Nitrosomonas europaea [TaxId: 915]

Probab=98.79  E-value=3.7e-08  Score=76.27  Aligned_cols=154  Identities=15%  Similarity=0.107  Sum_probs=86.9

Q ss_pred             EEEEEeeeecCCHHHHHHHHhcCCCCCccC-c-cceEEEEecCCCCCeEEEEEe--eCCCCcceEEEEEEEEeCCCcEEE
Q 028067           39 CSSSLVKHIKAPVHLVWSLVRRFDQPQKYK-P-FVSRCIVQGDLQIGSVREVNV--KSGLPATTSTERLELLDDEEHIFG  114 (214)
Q Consensus        39 ve~sI~~~I~APae~VW~vi~Df~~l~~W~-P-~V~s~~veG~g~VGsvR~l~~--~~G~p~~~v~ErL~~~D~~~~~~~  114 (214)
                      .+-.++++|+||+++||+++.|...+..|. | .......+++..+|....+.+  .+|. .....-++.++++ .+++.
T Consensus         5 ~~l~i~r~i~ap~e~Vw~a~tdpe~~~~W~~p~~~~~~~~~~d~~~GG~~~~~~~~~~g~-~~~~~g~v~ei~p-~~rl~   82 (165)
T d1xfsa_           5 LDLMLKRELAVPVNLVWRGLTEPELLKKWFVPKPWSISDCRVDLRPGGEFYTVMQDPEGN-KFPNSGCFLEVTD-EKRLI   82 (165)
T ss_dssp             TEEEEEEEESSCHHHHHHHHHCHHHHTTTSSCTTCEEEEEEECCSTTCEEEEEEECTTCC-EEEEEEEEEEEET-TTEEE
T ss_pred             cEEEEEEEEcCCHHHHHHHHcCHHHHhhcCCCCCccceeecccceeCceEEEEEECCCCc-eeeEEEEEEEecC-CcEEE
Confidence            344555689999999999999999999996 3 233334456655676655444  3443 2345668999999 47778


Q ss_pred             EEE--EcCcccceeeeccccccccCCCcceeeEEEEEEEeecCCCcceEEEEEEEEeeCCCCCCHHHHHHHHHHHHHHHH
Q 028067          115 MRI--VGGDHRLKIIWNFSNFISTSSSKLQNYSSIVTVHPEVIDGRPGTLVIESFVVDVPDGNTKDETCYFVEALIKCNL  192 (214)
Q Consensus       115 Y~i--v~g~~~~~~~~~~~~~~~~~~~p~~~y~ati~v~p~~~~gs~~t~~~~s~~~~~p~~~~~~~~~~~v~~~~~~gL  192 (214)
                      |+.  .+...+.     .....+....+-.....++.+.+.+ +||.++++...   ..++. ........+..=....|
T Consensus        83 ~t~~~~~~~~~~-----~~~~~~~~~~~~~~~~v~~~l~~~~-~gT~lt~~~~~---~~~~~-~~~~~~~g~~~GW~~~l  152 (165)
T d1xfsa_          83 WTSALVKNYRPA-----VPATTSDKECAHIVMTAVIELQPTS-SGTRYTACAMH---NTPGQ-RKLHEEMGFHEGWGTTI  152 (165)
T ss_dssp             EESSEEGGGEEC-----CC-----------CCEEEEEEEECS-SSEEEEEEEEC---SSHHH-HHHHHTTTHHHHHHHHH
T ss_pred             EEEeeccccccc-----ccccccccCCCCccEEEEEEEEEcC-CcEEEEEEEEc---CCHHH-HHHHHHHHHHHHHHHHH
Confidence            764  2211110     0000000111223456788888876 67766655321   11111 11112222445567889


Q ss_pred             HHHHHHHhhhhh
Q 028067          193 KSLADVSEHLAV  204 (214)
Q Consensus       193 ~~L~~~le~~a~  204 (214)
                      +.|++.||+.++
T Consensus       153 ~~L~~~le~~~a  164 (165)
T d1xfsa_         153 TQLEELLKQEKA  164 (165)
T ss_dssp             HHHHHHHHHHSC
T ss_pred             HHHHHHHHhcCC
Confidence            999999988653

>d1xn6a_ d.129.3.5 (A:) Hypothetical protein BC4709 {Bacillus cereus [TaxId: 1396]}

class: Alpha and beta proteins (a+b)
fold: TBP-like
superfamily: Bet v1-like
family: AHSA1 domain
domain: Hypothetical protein BC4709
species: Bacillus cereus [TaxId: 1396]

Probab=98.74  E-value=3.3e-08  Score=75.71  Aligned_cols=129  Identities=14%  Similarity=0.099  Sum_probs=81.4

Q ss_pred             ceEEEEEeeeecCCHHHHHHHHhcCCCCCccCccceEEEEecCCCCCeEEEEEeeCCCCcceEEEEEEEEeCCCcEEEEE
Q 028067           37 HQCSSSLVKHIKAPVHLVWSLVRRFDQPQKYKPFVSRCIVQGDLQIGSVREVNVKSGLPATTSTERLELLDDEEHIFGMR  116 (214)
Q Consensus        37 ~~ve~sI~~~I~APae~VW~vi~Df~~l~~W~P~V~s~~veG~g~VGsvR~l~~~~G~p~~~v~ErL~~~D~~~~~~~Y~  116 (214)
                      +.++.++  .|+||+++||++++|...+..|.+..   .  .+..+|..-.+...+|    ...=++++++| ++++.|+
T Consensus         8 ~~i~~~~--~i~ap~e~Vw~alTdp~~l~~W~~~~---~--~~~~~G~~~~~~~~~g----~~~g~v~~~~p-~~~l~~t   75 (143)
T d1xn6a_           8 NDIKQTI--VFNASIQKVWSVVSTAEGIASWFMPN---D--FVLEVGHEFHVQSPFG----PSPCKVLEIDE-PNHLSFS   75 (143)
T ss_dssp             CCEEEEE--EESSCHHHHHHTTSCSHHHHTTSCCB---C--CCCCTTCEECBCCTTC----CCCEEEEEEET-TTEEEEE
T ss_pred             CeEEEEE--EECCCHHHHHHHhcChHHhceEeecc---C--cccccCceEEEecccc----ceeEEEEEEeC-CcEEEEE
Confidence            4588888  99999999999999999999998632   2  2334555444443344    24457888999 5888998


Q ss_pred             EEcCcccceeeeccccccccCCCcceeeEEEEEEEeecCCCcceEEEEEEEEeeCCC------CCCHHHHHHHHHHHHHH
Q 028067          117 IVGGDHRLKIIWNFSNFISTSSSKLQNYSSIVTVHPEVIDGRPGTLVIESFVVDVPD------GNTKDETCYFVEALIKC  190 (214)
Q Consensus       117 iv~g~~~~~~~~~~~~~~~~~~~p~~~y~ati~v~p~~~~gs~~t~~~~s~~~~~p~------~~~~~~~~~~v~~~~~~  190 (214)
                      .-.                      .+...++.|++.++++|.++++-..+  +.+.      ..........+++=...
T Consensus        76 w~~----------------------~~~~v~~~l~~~~~G~T~l~l~h~g~--~~~~~~~~~~~~~~~~~~~~~~~GW~~  131 (143)
T d1xn6a_          76 WDT----------------------DGWVVSFDLKDLGDNKTEFTLIHGGW--KHPDEILPKANAKSSIIRDRMSGGWVA  131 (143)
T ss_dssp             ETT----------------------TTEEEEEEEEEEETTEEEEEEEEECC--CSTTCBCTTTCSBHHHHHHHHHHHHHH
T ss_pred             EcC----------------------CCcEEEEEEEEcCCCcEEEEEEEeCC--CCchhhhhhcchhhHHHHHHHhhCHHH
Confidence            622                      23567889999876666555543222  2111      11222333334444444


Q ss_pred             HH-HHHHHHHhh
Q 028067          191 NL-KSLADVSEH  201 (214)
Q Consensus       191 gL-~~L~~~le~  201 (214)
                      .| +.||++||.
T Consensus       132 ~l~~~Lk~~lEG  143 (143)
T d1xn6a_         132 IVNEKLKKVVEG  143 (143)
T ss_dssp             HHTTHHHHHHHC
T ss_pred             HHHHHHHHHhCC
Confidence            45 689998873

>d1xn5a_ d.129.3.5 (A:) Hypothetical protein BH1534 {Bacillus halodurans [TaxId: 86665]}

class: Alpha and beta proteins (a+b)
fold: TBP-like
superfamily: Bet v1-like
family: AHSA1 domain
domain: Hypothetical protein BH1534
species: Bacillus halodurans [TaxId: 86665]

Probab=98.73  E-value=5e-08  Score=73.42  Aligned_cols=93  Identities=14%  Similarity=0.130  Sum_probs=66.0

Q ss_pred             ceEEEEEeeeecCCHHHHHHHHhcCCCCCccCccceEEEEecCCCCCeEEEEEeeCCCCcceEEEEEEEEeCCCcEEEEE
Q 028067           37 HQCSSSLVKHIKAPVHLVWSLVRRFDQPQKYKPFVSRCIVQGDLQIGSVREVNVKSGLPATTSTERLELLDDEEHIFGMR  116 (214)
Q Consensus        37 ~~ve~sI~~~I~APae~VW~vi~Df~~l~~W~P~V~s~~veG~g~VGsvR~l~~~~G~p~~~v~ErL~~~D~~~~~~~Y~  116 (214)
                      +.++.++  .|+||+++||++++|...+..|.+..     +....+|....+...++    .+.=++.++++ ++++.|+
T Consensus         5 p~i~~~~--~i~ap~e~Vw~alt~p~~~~~W~~~~-----~~~~~~g~~~~~~~~~~----~~~g~v~~~~~-~~~l~~~   72 (138)
T d1xn5a_           5 PDIKKEV--RFNAPIEKVWEAVSTSEGLAFWFMEN-----DLKAETGHHFHLQSPFG----PSPCQVTDVER-PIKLSFT   72 (138)
T ss_dssp             CCEEEEE--EESSCHHHHHHHTTSHHHHHTTSCCB-----CCCSCTTCEEEEECSSC----EEEEEEEEEET-TTEEEEE
T ss_pred             CeEEEEE--EECCCHHHHHHHHcCHHHhceEccCC-----cccccceeeEEecCCcc----ceeEEEEEEeC-CcEEEEE
Confidence            4588888  99999999999999999999998642     22233565544443233    45668889999 5788998


Q ss_pred             EEcCcccceeeeccccccccCCCcceeeEEEEEEEeecCCCcceEEEE
Q 028067          117 IVGGDHRLKIIWNFSNFISTSSSKLQNYSSIVTVHPEVIDGRPGTLVI  164 (214)
Q Consensus       117 iv~g~~~~~~~~~~~~~~~~~~~p~~~y~ati~v~p~~~~gs~~t~~~  164 (214)
                      .-.                      .+...++.++|.+ +||.++++-
T Consensus        73 ~~~----------------------~~~~v~~~l~~~~-~gT~lt~~~   97 (138)
T d1xn5a_          73 WDT----------------------DGWSVTFHLKEEE-NGTIFTIVH   97 (138)
T ss_dssp             ETT----------------------TTEEEEEEEEECS-SSEEEEEEE
T ss_pred             ecC----------------------CCeEEEEEEEEcC-CcEEEEEEE
Confidence            622                      2456788899976 777555543

>d1zxfa1 d.129.3.5 (A:1-155) Calicheamicin gene cluster protein CalC {Micromonospora echinospora [TaxId: 1877]}

class: Alpha and beta proteins (a+b)
fold: TBP-like
superfamily: Bet v1-like
family: AHSA1 domain
domain: Calicheamicin gene cluster protein CalC
species: Micromonospora echinospora [TaxId: 1877]

Probab=98.60  E-value=8.9e-08  Score=73.34  Aligned_cols=145  Identities=10%  Similarity=-0.054  Sum_probs=84.4

Q ss_pred             CCceEEEEEeeeecCCHHHHHHHHhcCCCCCccCcc-c-----eEEEEecCCCCCeEEEEEeeCCCCcceEEEEEEEEeC
Q 028067           35 HDHQCSSSLVKHIKAPVHLVWSLVRRFDQPQKYKPF-V-----SRCIVQGDLQIGSVREVNVKSGLPATTSTERLELLDD  108 (214)
Q Consensus        35 ~~~~ve~sI~~~I~APae~VW~vi~Df~~l~~W~P~-V-----~s~~veG~g~VGsvR~l~~~~G~p~~~v~ErL~~~D~  108 (214)
                      +++.|+.++  +|+||+++||++++|  .+..|.|. .     ..+.++  ..+|....+...+|.  ..+.=+++++++
T Consensus         2 ~~p~v~~~~--~i~Ap~e~Vf~a~te--~~~~Ww~~~~~~~~~~~~~~~--~~~gG~~~~~~~dG~--~~~~g~v~ei~p   73 (155)
T d1zxfa1           2 YDPFVRHSV--TVKADRKTAFKTFLE--GFPEWWPNNFRTTKVGAPLGV--DKKGGRWYEIDEQGE--EHTFGLIRKVDE   73 (155)
T ss_dssp             CSSCEEEEE--EESSHHHHHHHHHTT--CSSSSSSGGGSTTTTCSSCEE--ETTTTEEECCCTTTS--CCCCEEEEEEET
T ss_pred             CCCeEEEEE--EEeCCHHHHHHHHHh--hhHhhcCCCCCCceEEEEEEe--eCCCceEEEEccccc--eeeeEEEEEEec
Confidence            467789999  999999999999996  47778642 2     122222  112323333344554  233457888999


Q ss_pred             CCcEEEEEEEcCcccceeeeccccccccCCCcceeeEEEEEEEeecCCCcceEEEEEEEEeeCCCCCC--HHHHHHHHHH
Q 028067          109 EEHIFGMRIVGGDHRLKIIWNFSNFISTSSSKLQNYSSIVTVHPEVIDGRPGTLVIESFVVDVPDGNT--KDETCYFVEA  186 (214)
Q Consensus       109 ~~~~~~Y~iv~g~~~~~~~~~~~~~~~~~~~p~~~y~ati~v~p~~~~gs~~t~~~~s~~~~~p~~~~--~~~~~~~v~~  186 (214)
                       .+++.|+.--++...             +.+-.....++.+++.++++|.++++-.    ..+....  .+.+...+..
T Consensus        74 -~~rl~~tw~~~~~~~-------------~~~~~~s~v~~~~~~~~~~~T~ltl~h~----g~~~~~~~~~~~~~~~~~~  135 (155)
T d1zxfa1          74 -PDTLVIGWRLNGFGR-------------IDPDNSSEFTVTFVADGQKKTRVDVEHT----HFDRMGTKHAKRVRNGMDK  135 (155)
T ss_dssp             -TTEEEEECCCSSSSS-------------CCCSSCCCEEEEEEEETTTEEEEEEEEC----SSTTSCHHHHHHHHHHHTT
T ss_pred             -CcEEEEEEecCCccc-------------cccccceEEEEEEEecCCCCEEEEEEEe----ccCcccchhHHHHHhhhhh
Confidence             477888753322111             1122345677888888766765554421    1121111  1122223344


Q ss_pred             HHHHHHHHHHHHHhhhhhc
Q 028067          187 LIKCNLKSLADVSEHLAVQ  205 (214)
Q Consensus       187 ~~~~gL~~L~~~le~~a~~  205 (214)
                      =....|+.|++++|+.+.+
T Consensus       136 GW~~~L~~L~~~le~~~~~  154 (155)
T d1zxfa1         136 GWPTILQSFQDKIDEEGAK  154 (155)
T ss_dssp             THHHHHHHHHHHHHHHHTT
T ss_pred             hHHHHHHHHHHHhhhhccC
Confidence            4677899999999997764

>d2nn5a1 d.129.3.5 (A:1-160) Hypothetical protein EF2215 {Enterococcus faecalis [TaxId: 1351]}

class: Alpha and beta proteins (a+b)
fold: TBP-like
superfamily: Bet v1-like
family: AHSA1 domain
domain: Hypothetical protein EF2215
species: Enterococcus faecalis [TaxId: 1351]

Probab=98.54  E-value=9.5e-07  Score=69.44  Aligned_cols=124  Identities=13%  Similarity=0.086  Sum_probs=80.2

Q ss_pred             EEeeeecCCHHHHHHHHhcCCCCCccCccceEEEEecCCCCCeEEEEEeeCCCCcceEEEEEEEEeCCCcEEEEEEEcCc
Q 028067           42 SLVKHIKAPVHLVWSLVRRFDQPQKYKPFVSRCIVQGDLQIGSVREVNVKSGLPATTSTERLELLDDEEHIFGMRIVGGD  121 (214)
Q Consensus        42 sI~~~I~APae~VW~vi~Df~~l~~W~P~V~s~~veG~g~VGsvR~l~~~~G~p~~~v~ErL~~~D~~~~~~~Y~iv~g~  121 (214)
                      .+++.|+||+++||++++|...+..|.+.....    +..+|..-.+.+.++    ...-++.+++| .+++.|+--+  
T Consensus        15 ~~er~i~ap~e~Vw~AlTdpe~l~~W~~~~~~~----d~~~GG~~~~~~~~~----~~~~~v~~~ep-p~rL~~tW~~--   83 (160)
T d2nn5a1          15 GTERAISASPQTIWRYLTETDKLKQWFPELEIG----ELGVNGFWRFILPDF----EETMPFTDYAE-EKYLGVTWDT--   83 (160)
T ss_dssp             EEEEEESSCHHHHHHHHHCHHHHHHHCTTEEEE----ECSTTCEEEEEETTE----EEEEEEEEEET-TTEEEEEETT--
T ss_pred             EEEEEecCCHHHHHHHHcCHHHHHhhCCCCCcc----cccCCCeeEEEcCCC----CcceEEEEEec-CCEEEEEecC--
Confidence            334489999999999999999999999864332    333454555666554    35567889998 6889998621  


Q ss_pred             ccceeeeccccccccCCCcceeeEEEEEEEeecCCCcceEEEEEEEEeeCCCCCCHHHHHHHHHHHHHHHHHHHHHHHhh
Q 028067          122 HRLKIIWNFSNFISTSSSKLQNYSSIVTVHPEVIDGRPGTLVIESFVVDVPDGNTKDETCYFVEALIKCNLKSLADVSEH  201 (214)
Q Consensus       122 ~~~~~~~~~~~~~~~~~~p~~~y~ati~v~p~~~~gs~~t~~~~s~~~~~p~~~~~~~~~~~v~~~~~~gL~~L~~~le~  201 (214)
                                            -..++.|+|.++++|..+++-.     .|+....... .. .+=....|+.|++.||.
T Consensus        84 ----------------------~~v~~eL~~~~~~~t~l~l~~~-----~~~~~~~~~~-~~-~~GW~~~Ld~L~~~leg  134 (160)
T d2nn5a1          84 ----------------------GIIYFDLKEQAPHQTLLVFSES-----LPENFTTPRH-KD-IAGWSIVLNRLKQVVET  134 (160)
T ss_dssp             ----------------------EEEEEEEEEEETTEEEEEEEEE-----ECTTCSSCHH-HH-HHHHHHHHHHHHHHHHC
T ss_pred             ----------------------ceEEEEEecCCCCeEEEEEEEe-----cCccccchhh-hh-HHHHHHHHHHHHHHHcC
Confidence                                  1357888887756654443321     1222221111 11 22358889999999998


Q ss_pred             hhhc
Q 028067          202 LAVQ  205 (214)
Q Consensus       202 ~a~~  205 (214)
                      ....
T Consensus       135 ~~~~  138 (160)
T d2nn5a1         135 PDAA  138 (160)
T ss_dssp             TTCC
T ss_pred             CCCC
Confidence            5543

>d3elia1 d.129.3.5 (A:2-144) Uncharacterized protein SPO3351 {Silicibacter pomeroyi [TaxId: 89184]}

class: Alpha and beta proteins (a+b)
fold: TBP-like
superfamily: Bet v1-like
family: AHSA1 domain
domain: Uncharacterized protein SPO3351
species: Silicibacter pomeroyi [TaxId: 89184]

Probab=98.28  E-value=4.4e-06  Score=62.35  Aligned_cols=131  Identities=13%  Similarity=0.041  Sum_probs=72.8

Q ss_pred             EEeeeecCCHHHHHHHHhcCCCCCccCc-cceEEE---EecCCCCCeEEEEEee--CCCCcceEEEEEEEEeCCCcEEEE
Q 028067           42 SLVKHIKAPVHLVWSLVRRFDQPQKYKP-FVSRCI---VQGDLQIGSVREVNVK--SGLPATTSTERLELLDDEEHIFGM  115 (214)
Q Consensus        42 sI~~~I~APae~VW~vi~Df~~l~~W~P-~V~s~~---veG~g~VGsvR~l~~~--~G~p~~~v~ErL~~~D~~~~~~~Y  115 (214)
                      .++++|+||+++||+++.|...+..|.+ .-..+.   .+.+..+|....+.+.  +|.. ..+.-++++++|. +++.|
T Consensus         4 ~i~r~i~a~~e~Vw~a~tdp~~l~~W~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~~g~~-~~~~g~v~~~~p~-~rl~~   81 (143)
T d3elia1           4 RLEREFAVAPEALFAWVSDGAKLLQWWGPEGLHVPADQHDLDFTRLGPWFSVMVNGEGQR-YKVSGQVTHVKPP-QSVGF   81 (143)
T ss_dssp             EEEEEESSCHHHHHHHTTCHHHHHHHCSSTTCBCCTTSBCCCCSSSEEEEEEEECTTCCE-EEEEEEEEEEETT-TEEEE
T ss_pred             EEEEEECCCHHHHHHHhcCHHHHhhhcCCCCceeeeeeEEEeeccCccEEEEEECCCCcE-EEEEEEEEEcCCC-CEEEE
Confidence            3455889999999999999999988873 222222   1223334444333333  4431 2466689999995 55666


Q ss_pred             E--EEcCcccceeeeccccccccCCCcceeeEEEEEEEeecCCCcceEEEEEEEEeeCCCCCCHHHHHHHHHHHHHHHHH
Q 028067          116 R--IVGGDHRLKIIWNFSNFISTSSSKLQNYSSIVTVHPEVIDGRPGTLVIESFVVDVPDGNTKDETCYFVEALIKCNLK  193 (214)
Q Consensus       116 ~--iv~g~~~~~~~~~~~~~~~~~~~p~~~y~ati~v~p~~~~gs~~t~~~~s~~~~~p~~~~~~~~~~~v~~~~~~gL~  193 (214)
                      +  +.+.+..                +-..-..++.++|.+ +||.++++-.    ..++.    .....+..=....|+
T Consensus        82 t~~~~~~~~~----------------~~~~~~vt~~l~~~~-~gT~l~~~~~----~~~~~----~~~~~~~~GW~~~L~  136 (143)
T d3elia1          82 TWGWHDDDDR----------------RGAESHVMFIVEPCA-KGARLILDHR----ELGDD----EMSLRHEEGWTSSLR  136 (143)
T ss_dssp             EEEEECTTSC----------------EEEEEEEEEECCBC---CEEEEEEEE----SCSCH----HHHHHHHHHHHHHHH
T ss_pred             EEeecCCCCC----------------CCCcEEEEEEEEEcC-CCEEEEEEEE----cCCCH----HHHHHHHHHHHHHHH
Confidence            5  3332211                112345667778876 6675554432    22322    223333444566677


Q ss_pred             HHHHHH
Q 028067          194 SLADVS  199 (214)
Q Consensus       194 ~L~~~l  199 (214)
                      .|++.|
T Consensus       137 ~L~~~l  142 (143)
T d3elia1         137 KLAAEL  142 (143)
T ss_dssp             HHHHHH
T ss_pred             HHHHHh
Confidence            777765

>d2k5ga1 d.129.3.5 (A:1-183) Uncharacterized protein BPP1335 {Bordetella parapertussis [TaxId: 519]}

class: Alpha and beta proteins (a+b)
fold: TBP-like
superfamily: Bet v1-like
family: AHSA1 domain
domain: Uncharacterized protein BPP1335
species: Bordetella parapertussis [TaxId: 519]

Probab=98.19  E-value=6.8e-06  Score=64.70  Aligned_cols=132  Identities=13%  Similarity=0.106  Sum_probs=79.5

Q ss_pred             eEEEEEeeeecCCHHHHHHHHhcCCCCCccCccceEEEEecCCCCCeEEEEEeeCCC--------------CcceEEEEE
Q 028067           38 QCSSSLVKHIKAPVHLVWSLVRRFDQPQKYKPFVSRCIVQGDLQIGSVREVNVKSGL--------------PATTSTERL  103 (214)
Q Consensus        38 ~ve~sI~~~I~APae~VW~vi~Df~~l~~W~P~V~s~~veG~g~VGsvR~l~~~~G~--------------p~~~v~ErL  103 (214)
                      .+.-+.  .|+||+++||++++|...+.+|....     +.+..+|....+.+.++.              ....+.-++
T Consensus        20 ~l~~er--~~~Ap~e~VW~AlTdpe~l~~W~~p~-----~~d~~~Gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~v   92 (183)
T d2k5ga1          20 SIRFER--LLPGPIERVWAWLADADKRARWLAGG-----ELPRQPGQTFELHFNHAALTAETAPARYAQYDRPIVARHTL   92 (183)
T ss_dssp             SEEEEE--EESSSSHHHHHHHHCHHHHTTTSCCC-----CCCSSTTCEEEEEECGGGSCCSSCCSSCSGGGSCEEEEEEE
T ss_pred             eEEEEE--EeCCCHHHHHHHHhChHHHhhhcCCC-----CccccCCCEEEEEecCCCCcccccccccccCCCceeEEEEE
Confidence            344444  78999999999999999999997421     123334444444332110              012466789


Q ss_pred             EEEeCCCcEEEEEEEcCcccceeeeccccccccCCCcceeeEEEEEEEeecCCCcceEEEEEEEEeeCCCCCCHHHHHHH
Q 028067          104 ELLDDEEHIFGMRIVGGDHRLKIIWNFSNFISTSSSKLQNYSSIVTVHPEVIDGRPGTLVIESFVVDVPDGNTKDETCYF  183 (214)
Q Consensus       104 ~~~D~~~~~~~Y~iv~g~~~~~~~~~~~~~~~~~~~p~~~y~ati~v~p~~~~gs~~t~~~~s~~~~~p~~~~~~~~~~~  183 (214)
                      +++++ .+++.|+...++..                  ..-..++.+.+.+ +||.++++-.    ..++   .+.+.. 
T Consensus        93 ~~~~p-~~rl~~tw~~~~~~------------------~~s~v~~~l~~~g-~gT~ltl~~~----~~~~---~~~~~~-  144 (183)
T d2k5ga1          93 LRCEP-PRVLALTWGGGAGE------------------APSEVLFELSEAG-EQVRLVLTHT----RLAD---RAAMLD-  144 (183)
T ss_dssp             EEEET-TTEEEEECCCCSSS------------------SCCEEEEEEEECS-SSEEEEEEEE----CCCS---HHHHHH-
T ss_pred             EEEeC-CeEEEEEeccCCCC------------------CcEEEEEEEEEcC-CcEEEEEEEe----cCCC---hhhHHH-
Confidence            99999 57789987554321                  1224678888876 6765554432    1222   222222 


Q ss_pred             HHHHHHHHHHHHHHHHhhhhh
Q 028067          184 VEALIKCNLKSLADVSEHLAV  204 (214)
Q Consensus       184 v~~~~~~gL~~L~~~le~~a~  204 (214)
                      ...=....|+.|++.|+..+.
T Consensus       145 ~~~GW~~~L~~L~~~leg~~~  165 (183)
T d2k5ga1         145 VAGGWHAHLAVLAGKLAGQAP  165 (183)
T ss_dssp             HTTTTTTHHHHHHHHHHTSCC
T ss_pred             HhhhHHHHHHHHHHHHCCCCC
Confidence            233446679999999987544

>d1x53a1 d.129.3.5 (A:8-139) Activator of 90 kda heat shock protein ATPase homolog 1, AHSA1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: TBP-like
superfamily: Bet v1-like
family: AHSA1 domain
domain: Activator of 90 kda heat shock protein ATPase homolog 1, AHSA1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.87  E-value=3.8e-05  Score=57.67  Aligned_cols=126  Identities=9%  Similarity=0.005  Sum_probs=71.2

Q ss_pred             EEEEEeeeecCCHHHHHHHHhcCCCCCccCccceEEEEecCCCCCeEEEEEeeCCCCcceEEEEEEEEeCCCcEEEEEEE
Q 028067           39 CSSSLVKHIKAPVHLVWSLVRRFDQPQKYKPFVSRCIVQGDLQIGSVREVNVKSGLPATTSTERLELLDDEEHIFGMRIV  118 (214)
Q Consensus        39 ve~sI~~~I~APae~VW~vi~Df~~l~~W~P~V~s~~veG~g~VGsvR~l~~~~G~p~~~v~ErL~~~D~~~~~~~Y~iv  118 (214)
                      .+-.++++++||+++||+++.|...+..|...-  +  +.+..+|..  +++.+|.    +.=++++++|. +++.|+--
T Consensus         4 ~~i~~~r~~~ap~e~Vw~a~tdpe~l~~W~~~~--~--~~d~~~Gg~--f~~~~g~----~~G~~~ev~p~-~rlv~tw~   72 (132)
T d1x53a1           4 CKITLKETFLTSPEELYRVFTTQELVQAFTHAP--A--TLEADRGGK--FHMVDGN----VSGEFTDLVPE-KHIVMKWR   72 (132)
T ss_dssp             EEEEEEEEESSCHHHHHHHTTCHHHHHHHSCSC--C--BCCCSTTCC--CBBTTTT----EECCEEEEETT-TEEEEEEE
T ss_pred             eEEEEEEEECCCHHHHHHHHcCHHHHHhhhCCc--c--ccccccCCE--EEEEecc----eeEEEEEEeCC-CEEEEEEe
Confidence            344555589999999999999999999997422  2  233334433  2233452    44567789885 55555431


Q ss_pred             cCcccceeeeccccccccCCCcceeeEEEEEEEeecCCCcceEEEEEEEEeeCCCCCCHHHHHHHHHHHHHHHHHHHHHH
Q 028067          119 GGDHRLKIIWNFSNFISTSSSKLQNYSSIVTVHPEVIDGRPGTLVIESFVVDVPDGNTKDETCYFVEALIKCNLKSLADV  198 (214)
Q Consensus       119 ~g~~~~~~~~~~~~~~~~~~~p~~~y~ati~v~p~~~~gs~~t~~~~s~~~~~p~~~~~~~~~~~v~~~~~~gL~~L~~~  198 (214)
                      -.+.+.                -..-..++.+++.+ ++|.++++-...    |+.    ..+..-++.=+.-|+.|++.
T Consensus        73 ~~~~~~----------------~~~s~vt~~l~~~~-~~T~l~l~~~g~----p~~----~~e~~~~GW~~~~~~~lk~~  127 (132)
T d1x53a1          73 FKSWPE----------------GHFATITLTFIDKN-GETELCMEGRGI----PAP----EEERTRQGWQRYYFEGIKQT  127 (132)
T ss_dssp             ETTSCT----------------TCCEEEEEECCBCS-SCEEEEEEEEEE----EHH----HHHHHHHTTHHHHHHHHHHH
T ss_pred             cCCCCC----------------CCcEEEEEEEEECC-CcEEEEEEEECC----Ccc----hHHHHHhhHHHHHHHHHHHH
Confidence            111111                01234577777865 777666665432    321    22222233333457777776


Q ss_pred             Hh
Q 028067          199 SE  200 (214)
Q Consensus       199 le  200 (214)
                      +.
T Consensus       128 fG  129 (132)
T d1x53a1         128 FG  129 (132)
T ss_dssp             TC
T ss_pred             cC
Confidence            53

>d1em2a_ d.129.3.2 (A:) Lipid transport domain of Mln64 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: TBP-like
superfamily: Bet v1-like
family: STAR domain
domain: Lipid transport domain of Mln64
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.25  E-value=0.16  Score=38.91  Aligned_cols=148  Identities=10%  Similarity=-0.013  Sum_probs=80.2

Q ss_pred             EEEEEeeeecCCHHHHHH-HHhcCCCCCccCccceEEEE-e--cCCCCCeEEEEEeeCCCC-----cceEEEEEEEEeCC
Q 028067           39 CSSSLVKHIKAPVHLVWS-LVRRFDQPQKYKPFVSRCIV-Q--GDLQIGSVREVNVKSGLP-----ATTSTERLELLDDE  109 (214)
Q Consensus        39 ve~sI~~~I~APae~VW~-vi~Df~~l~~W~P~V~s~~v-e--G~g~VGsvR~l~~~~G~p-----~~~v~ErL~~~D~~  109 (214)
                      +..+.  .|++|+++|.. ++.|....+.|.|.+.++++ +  +++  ..+-........|     +-.+.-|-...++.
T Consensus        54 ~k~~~--~i~~~~~~v~~~~~~d~e~~~~Wd~~~~~~~ile~~~~~--~~i~~~~~~~~~~~~vs~RD~v~~~~~~~~~~  129 (214)
T d1em2a_          54 FILKT--FLPCPAELVYQEVILQPERMVLWNKTVTACQILQRVEDN--TLISYDVSAGAAGGVVSPRDFVNVRRIERRRD  129 (214)
T ss_dssp             EEEEE--EESSCHHHHHHHTTTCHHHHTTTCTTEEEEEEEEEETTT--EEEEEEEECCBTTTTBCCEEEEEEEEEEECSS
T ss_pred             EEEEE--EEeCCHHHHHHHHHhChHHHHHHHHHHhheEEEEEcCCC--ceEEEEEecccCCCCCCCcEEEEEEEEEEcCC
Confidence            44555  78999999875 77889888999999999974 4  222  1222222222112     11233344444554


Q ss_pred             CcEEEEEEEcCcccceeeeccccccccCCCcceeeEEEEEEEeecCC--CcceEEEEEEEEeeCCCC-CCHHHHHHHHHH
Q 028067          110 EHIFGMRIVGGDHRLKIIWNFSNFISTSSSKLQNYSSIVTVHPEVID--GRPGTLVIESFVVDVPDG-NTKDETCYFVEA  186 (214)
Q Consensus       110 ~~~~~Y~iv~g~~~~~~~~~~~~~~~~~~~p~~~y~ati~v~p~~~~--gs~~t~~~~s~~~~~p~~-~~~~~~~~~v~~  186 (214)
                      ...+....+.-+...         ...+..-...+.+...+.|.+++  .|.+++...   .| |.| ...-.+..++..
T Consensus       130 ~~~~~~~s~~~~~~p---------~~~~~vR~~~~~~~~~i~p~~~~~~~t~vt~~~~---~D-p~G~iP~~lvn~~~~~  196 (214)
T d1em2a_         130 RYLSSGIATSHSAKP---------PTHKYVRGENGPGGMIVLKSASNPRVCTFVWILN---TD-LKGRLPRYLIHQSLAA  196 (214)
T ss_dssp             EEEEEEEECCCTTSC---------CCTTSEECEECSEEEEEEECSSCTTCEEEEEEEC---EE-CCSSSCHHHHHHHHHH
T ss_pred             cEEEEEEeecccccc---------CCCCeEEEEEEeeeEEEEECCCCCCeEEEEEEEE---eC-CCCCCCHHHHHHHHHH
Confidence            444333333211100         00111113456677788886543  343443332   35 333 334445556667


Q ss_pred             HHHHHHHHHHHHHhhhh
Q 028067          187 LIKCNLKSLADVSEHLA  203 (214)
Q Consensus       187 ~~~~gL~~L~~~le~~a  203 (214)
                      ....-+++|++.+.++.
T Consensus       197 ~~~~~~~~Lrk~~~k~~  213 (214)
T d1em2a_         197 TMFEFAFHLRQRISELG  213 (214)
T ss_dssp             HHHHHHHHHHHHHHHTT
T ss_pred             hHHHHHHHHHHHHHHhc
Confidence            77777999999998864

>d1jssa_ d.129.3.2 (A:) Cholesterol-regulated Start protein 4 (Stard4). {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: TBP-like
superfamily: Bet v1-like
family: STAR domain
domain: Cholesterol-regulated Start protein 4 (Stard4).
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=95.92  E-value=0.23  Score=37.68  Aligned_cols=39  Identities=8%  Similarity=-0.020  Sum_probs=33.2

Q ss_pred             eEEEEEeeeecCCHHHHHHHHhcCCCCCccCccceEEE-Eec
Q 028067           38 QCSSSLVKHIKAPVHLVWSLVRRFDQPQKYKPFVSRCI-VQG   78 (214)
Q Consensus        38 ~ve~sI~~~I~APae~VW~vi~Df~~l~~W~P~V~s~~-veG   78 (214)
                      .+..+.  .|++|+++|++++.|....+.|.|.+.+++ ++.
T Consensus        45 ~~r~~~--~i~~~~~~v~~~l~d~~~~~~Wd~~~~~~~~le~   84 (199)
T d1jssa_          45 LYKAQG--VMDDVVNNVIDHIRPGPWRLDWDRLMTSLDVLEH   84 (199)
T ss_dssp             EEEEEE--EESSCHHHHHHHHSSSTTHHHHCSSEEEEEEEEE
T ss_pred             EEEEEE--EeCCCHHHHHHHHhChhhhhhcccchheEEEEEE
Confidence            455555  789999999999999999999999999997 453

>d1ln1a_ d.129.3.2 (A:) Phosphatidylcholine transfer protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: TBP-like
superfamily: Bet v1-like
family: STAR domain
domain: Phosphatidylcholine transfer protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.50  E-value=0.66  Score=34.91  Aligned_cols=145  Identities=12%  Similarity=0.082  Sum_probs=74.2

Q ss_pred             EEEEEeeee-cCCHHHHHHHHhcCCCCCccCccceEEEEe-cCCCCCeEEEEEeeCCCCcceEEE-----EEEEEeCCCc
Q 028067           39 CSSSLVKHI-KAPVHLVWSLVRRFDQPQKYKPFVSRCIVQ-GDLQIGSVREVNVKSGLPATTSTE-----RLELLDDEEH  111 (214)
Q Consensus        39 ve~sI~~~I-~APae~VW~vi~Df~~l~~W~P~V~s~~ve-G~g~VGsvR~l~~~~G~p~~~v~E-----rL~~~D~~~~  111 (214)
                      +....  +| ++|++++++++.|....+.|.|.+.++... .++  -.+-.+.+....|. .-||     +....+++..
T Consensus        47 ~k~~~--~i~~~~~~~~~~~l~d~~~~~~Wd~~~~~~~~~~~~~--~~i~y~~~~~p~p~-~~RD~v~~~~~~~~~~~~~  121 (203)
T d1ln1a_          47 YKVFG--VLEDCSPTLLADIYMDSDYRKQWDQYVKELYEQECNG--ETVVYWEVKYPFPM-SNRDYVYLRQRRDLDMEGR  121 (203)
T ss_dssp             EEEEE--EETTSCHHHHHHHHHCHHHHHHHCTTEEEEEEEEETT--EEEEEEEECCCTTS-CCEEEEEEEEEEEECSTTC
T ss_pred             EEEEE--EEcCCCHHHHHHHHcCHhHhhhhcccceEEEEEccCC--cEEEEEEccccccc-CCceEEEEEEEEEccCCCC
Confidence            44444  77 599999999999999989999999887533 222  12223333322221 1222     2222333332


Q ss_pred             EEEEEEE-cCcccceeeeccccccccCCCcceeeEEEEEEEeecCCCcceEEEEEEEEeeCCCCCC-HHHHHHHHHHHHH
Q 028067          112 IFGMRIV-GGDHRLKIIWNFSNFISTSSSKLQNYSSIVTVHPEVIDGRPGTLVIESFVVDVPDGNT-KDETCYFVEALIK  189 (214)
Q Consensus       112 ~~~Y~iv-~g~~~~~~~~~~~~~~~~~~~p~~~y~ati~v~p~~~~gs~~t~~~~s~~~~~p~~~~-~~~~~~~v~~~~~  189 (214)
                      ....-+. ..+++.-       -....-.....+.+.+.++|.++++|.+++...   .| |.|.. .-.+..+......
T Consensus       122 ~~~v~~~~~~~~~~~-------p~~~~~vR~~~~~~~~~l~~~~~~~t~v~~~~~---~D-p~G~iP~~lvn~~~~~~~~  190 (203)
T d1ln1a_         122 KIHVILARSTSMPQL-------GERSGVIRVKQYKQSLAIESDGKKGSKVFMYYF---DN-PGGQIPSWLINWAAKNGVP  190 (203)
T ss_dssp             CEEEEEEEECCBTTB-------CCCTTSEEECCEEEEEEEEECSSSSEEEEEEEE---EC-CSSCCCHHHHHHHHHTHHH
T ss_pred             eEEEEEeecccCCcC-------cccCCccccceeeEEEEEEecCCCcEEEEEEEE---cC-CCCcCHHHHHHHHHHHHHH
Confidence            2222111 1111110       000111234678888999998867776665543   24 33432 2233334444555


Q ss_pred             HHHHHHHHHH
Q 028067          190 CNLKSLADVS  199 (214)
Q Consensus       190 ~gL~~L~~~l  199 (214)
                      ..++.|++.+
T Consensus       191 ~~~~~l~k~~  200 (203)
T d1ln1a_         191 NFLKDMARAC  200 (203)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHH
Confidence            5566666554

>d2ffsa1 d.129.3.7 (A:1-151) Hypothetical protein PA1206 {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a+b)
fold: TBP-like
superfamily: Bet v1-like
family: PA1206-like
domain: Hypothetical protein PA1206
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=94.04  E-value=0.87  Score=34.45  Aligned_cols=64  Identities=14%  Similarity=0.037  Sum_probs=45.9

Q ss_pred             CHHHHHHHHh-cCCCCCccCccceEEEEecCCCCCeEEEEEeeCCCCcceEEEEEEEEeCCCcEEEEEEEc
Q 028067           50 PVHLVWSLVR-RFDQPQKYKPFVSRCIVQGDLQIGSVREVNVKSGLPATTSTERLELLDDEEHIFGMRIVG  119 (214)
Q Consensus        50 Pae~VW~vi~-Df~~l~~W~P~V~s~~veG~g~VGsvR~l~~~~G~p~~~v~ErL~~~D~~~~~~~Y~iv~  119 (214)
                      ..+++|.-|- .-.++..+.|.+.+|++-..++-+-.|.++++++    .++|++....+  ..+.|.+..
T Consensus        21 Tr~QlW~GL~lrar~p~~Fv~~l~~c~v~~~~~~~~~Rel~fg~~----~v~e~Vtl~~~--~~v~f~~~a   85 (151)
T d2ffsa1          21 DRLQLWEGLVCRAREPQYFVVGLERFEILVDDGDRLHRRLYLPGL----VVEDEVVLKAP--DSAHYSIKP   85 (151)
T ss_dssp             CHHHHHHHHHHHHHCGGGTCTTCCEEEEEEECSSEEEEEEEETTE----EEEEEEEEETT--TEEEEEECC
T ss_pred             CHHHHHHHHHHhhcCHhhcccccceEEEEEecCCeEEEEEEECCc----eeEEEEEEcCC--cEEEEEccc
Confidence            4679999775 4566678999999998632222356799999554    79999986544  567887754

>d2psoa1 d.129.3.2 (A:908-1104) Star-related lipid transfer protein 13 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: TBP-like
superfamily: Bet v1-like
family: STAR domain
domain: Star-related lipid transfer protein 13
species: Human (Homo sapiens) [TaxId: 9606]

Probab=84.33  E-value=6.4  Score=29.23  Aligned_cols=142  Identities=13%  Similarity=0.090  Sum_probs=70.8

Q ss_pred             eEEEEEeeeecCCHHHHHH-HHhcCCCCCccCccceEEE-Ee--cCCCCCeEEEEEeeCCCCcceEEE----EEEEEeCC
Q 028067           38 QCSSSLVKHIKAPVHLVWS-LVRRFDQPQKYKPFVSRCI-VQ--GDLQIGSVREVNVKSGLPATTSTE----RLELLDDE  109 (214)
Q Consensus        38 ~ve~sI~~~I~APae~VW~-vi~Df~~l~~W~P~V~s~~-ve--G~g~VGsvR~l~~~~G~p~~~v~E----rL~~~D~~  109 (214)
                      .+..+.  +|+|++++|.. ++.+   .+.|.+.+.+++ ++  +++  -.+-+..+..-.|. .-|+    +-...+.+
T Consensus        45 ~~k~~~--~i~a~~~~vl~~~l~~---r~~Wd~~~~~~~~le~~~~~--~~i~y~~~~~p~pv-s~RD~v~~~~~~~~~~  116 (197)
T d2psoa1          45 LWKASV--EVEAPPSVVLNRVLRE---RHLWDEDFVQWKVVETLDRQ--TEIYQYVLNSMAPH-PSRDFVVLRTWKTDLP  116 (197)
T ss_dssp             EEEEEE--EESSCHHHHHHHHHHC---GGGTCTTBCCCEEEEEEETT--EEEEEEEECCSSSC-CCEEEEEEEEEESCCG
T ss_pred             EEEEEE--EEcCCHHHHHHHHHHh---HHHHhhhhheEEEEEEcCCC--CEEEEEEccCCCcc-cceeEEEEEEEEEeCC
Confidence            444555  77999998875 4443   468999998886 44  332  11222223221121 1222    22233332


Q ss_pred             C--cEEEEEEEcCcccceeeeccccccccCCCcceeeEEEEEEEeecCCCcceEEEEEEEEeeCCCCCCHHHHHHHHHHH
Q 028067          110 E--HIFGMRIVGGDHRLKIIWNFSNFISTSSSKLQNYSSIVTVHPEVIDGRPGTLVIESFVVDVPDGNTKDETCYFVEAL  187 (214)
Q Consensus       110 ~--~~~~Y~iv~g~~~~~~~~~~~~~~~~~~~p~~~y~ati~v~p~~~~gs~~t~~~~s~~~~~p~~~~~~~~~~~v~~~  187 (214)
                      +  ..+...-++.+.+.     .+     +-.-...+.+.+.++|.+++.|.+|+...   .|+ .|.-..=+...+...
T Consensus       117 ~~~~~i~~~Sv~~~~~p-----~~-----~~VR~~~~~~~~~i~p~~~~~t~vt~~~~---~Dp-~G~iP~W~~n~~~~~  182 (197)
T d2psoa1         117 KGMCTLVSLSVEHEEAQ-----LL-----GGVRAVVMDSQYLIEPCGSGKSRLTHICR---IDL-KGHSPEWYSKGFGHL  182 (197)
T ss_dssp             GGCEEEEEEECCCTTCC-----CC-----SSEECCEEEEEEEEEECSTTCEEEEEEEE---ECC-SSSCTTTTTTHHHHH
T ss_pred             CCEEEEEEEeccccCCC-----CC-----CcEEEEEEeccEEEEECCCCcEEEEEEEE---ECC-CCcCchhHHhhhHHH
Confidence            3  33333333322111     00     11224567788889998866666665554   342 332221122333666


Q ss_pred             HHHHHHHHHHHHhh
Q 028067          188 IKCNLKSLADVSEH  201 (214)
Q Consensus       188 ~~~gL~~L~~~le~  201 (214)
                      ....+.+|++.+++
T Consensus       183 ~~~~~~~lr~~f~~  196 (197)
T d2psoa1         183 CAAEVARIRNSFQP  196 (197)
T ss_dssp             HHHHHHHHHHTTSC
T ss_pred             HHHHHHHHHHhhhC
Confidence            66777778776654