Citrus Sinensis ID: 028081
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
|---|
|
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 214 | 2.2.26 [Sep-21-2011] | |||||||
| P69834 | 302 | 2-C-methyl-D-erythritol 4 | yes | no | 0.971 | 0.688 | 0.812 | 3e-97 | |
| Q5N8G1 | 297 | 2-C-methyl-D-erythritol 4 | yes | no | 0.971 | 0.700 | 0.759 | 1e-86 | |
| Q6MEE8 | 230 | 2-C-methyl-D-erythritol 4 | yes | no | 0.953 | 0.886 | 0.478 | 1e-49 | |
| Q9Z7X5 | 211 | 2-C-methyl-D-erythritol 4 | yes | no | 0.911 | 0.924 | 0.391 | 3e-38 | |
| Q5L433 | 228 | 2-C-methyl-D-erythritol 4 | yes | no | 0.957 | 0.899 | 0.416 | 4e-37 | |
| A4J0Y3 | 234 | 2-C-methyl-D-erythritol 4 | yes | no | 0.967 | 0.884 | 0.395 | 5e-37 | |
| Q824I4 | 212 | 2-C-methyl-D-erythritol 4 | yes | no | 0.911 | 0.919 | 0.405 | 5e-36 | |
| A4IJG4 | 228 | 2-C-methyl-D-erythritol 4 | yes | no | 0.957 | 0.899 | 0.406 | 1e-35 | |
| Q8R7S6 | 227 | 2-C-methyl-D-erythritol 4 | yes | no | 0.967 | 0.911 | 0.404 | 2e-35 | |
| Q253C1 | 212 | 2-C-methyl-D-erythritol 4 | yes | no | 0.911 | 0.919 | 0.405 | 2e-35 |
| >sp|P69834|ISPD_ARATH 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase, chloroplastic OS=Arabidopsis thaliana GN=ISPD PE=1 SV=1 | Back alignment and function desciption |
|---|
Score = 353 bits (907), Expect = 3e-97, Method: Compositional matrix adjust.
Identities = 169/208 (81%), Positives = 191/208 (91%)
Query: 1 MGANMPKQYLPLLGQPIALYSFYTFSRMVEVKEIVVVCDPSYSDIFEETKEKINVDLKFS 60
M +MPKQY+PLLGQPIALYSF+TFSRM EVKEIVVVCDP + DIFEE +E I+VDL+F+
Sbjct: 92 MKMSMPKQYIPLLGQPIALYSFFTFSRMPEVKEIVVVCDPFFRDIFEEYEESIDVDLRFA 151
Query: 61 LPGKERQDSVYSGLQEVDFNSELVCIHDSARPLVLSKDVQKVLMDALRVGAAVLGVPAKA 120
+PGKERQDSVYSGLQE+D NSELVCIHDSARPLV ++DV+KVL D VGAAVLGVPAKA
Sbjct: 152 IPGKERQDSVYSGLQEIDVNSELVCIHDSARPLVNTEDVEKVLKDGSAVGAAVLGVPAKA 211
Query: 121 TIKEANSESFVVRTLDRKTLWEMQTPQVIKPDLLKKGFELVNREGLEVTDDVSIVEHLKH 180
TIKE NS+S VV+TLDRKTLWEMQTPQVIKP+LLKKGFELV EGLEVTDDVSIVE+LKH
Sbjct: 212 TIKEVNSDSLVVKTLDRKTLWEMQTPQVIKPELLKKGFELVKSEGLEVTDDVSIVEYLKH 271
Query: 181 PVYITEGSYTNIKVTTPDDLLIAERILN 208
PVY+++GSYTNIKVTTPDDLL+AERIL+
Sbjct: 272 PVYVSQGSYTNIKVTTPDDLLLAERILS 299
|
Enzyme of the plastid non-mevalonate pathway for isoprenoid biosynthesis that catalyzes the formation of 4-diphosphocytidyl-2-C-methyl-D-erythritol from CTP and 2-C-methyl-D-erythritol 4-phosphate (MEP). Is essential for chloroplast development and required for pigments and gibberellins biosynthesis. Arabidopsis thaliana (taxid: 3702) EC: 2EC: .EC: 7EC: .EC: 7EC: .EC: 6EC: 0 |
| >sp|Q5N8G1|ISPD_ORYSJ 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase, chloroplastic OS=Oryza sativa subsp. japonica GN=ISPD PE=2 SV=1 | Back alignment and function description |
|---|
Score = 319 bits (817), Expect = 1e-86, Method: Compositional matrix adjust.
Identities = 158/208 (75%), Positives = 185/208 (88%)
Query: 1 MGANMPKQYLPLLGQPIALYSFYTFSRMVEVKEIVVVCDPSYSDIFEETKEKINVDLKFS 60
MGA+MPKQYLPLLG PIAL+S TF ++ EVKE+VVVCDP Y DIFE + E + + +KF+
Sbjct: 88 MGASMPKQYLPLLGLPIALHSLKTFCQLKEVKEVVVVCDPDYKDIFEGSIENVQIPIKFA 147
Query: 61 LPGKERQDSVYSGLQEVDFNSELVCIHDSARPLVLSKDVQKVLMDALRVGAAVLGVPAKA 120
LPGKERQDSVY+GLQE+D +SELVC+HDSARPLV S+DV+KVL DA+ GAAVLGVP KA
Sbjct: 148 LPGKERQDSVYNGLQEIDGDSELVCVHDSARPLVSSEDVKKVLEDAIVHGAAVLGVPVKA 207
Query: 121 TIKEANSESFVVRTLDRKTLWEMQTPQVIKPDLLKKGFELVNREGLEVTDDVSIVEHLKH 180
TIKEA+S SFVV+TLDRKTLWEMQTPQV++P LL+ GFELV R+GLEVTDDVSIVE+LKH
Sbjct: 208 TIKEADSNSFVVKTLDRKTLWEMQTPQVMRPSLLRDGFELVKRDGLEVTDDVSIVEYLKH 267
Query: 181 PVYITEGSYTNIKVTTPDDLLIAERILN 208
VYITEGSYTNIKVTTPDDLL+AER++N
Sbjct: 268 SVYITEGSYTNIKVTTPDDLLLAERLMN 295
|
Enzyme of the plastid non-mevalonate pathway for isoprenoid biosynthesis that catalyzes the formation of 4-diphosphocytidyl-2-C-methyl-D-erythritol from CTP and 2-C-methyl-D-erythritol 4-phosphate (MEP). Is essential for chloroplast development. Oryza sativa subsp. japonica (taxid: 39947) EC: 2 EC: . EC: 7 EC: . EC: 7 EC: . EC: 6 EC: 0 |
| >sp|Q6MEE8|ISPD_PARUW 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase OS=Protochlamydia amoebophila (strain UWE25) GN=ispD PE=3 SV=1 | Back alignment and function description |
|---|
Score = 196 bits (497), Expect = 1e-49, Method: Compositional matrix adjust.
Identities = 101/211 (47%), Positives = 142/211 (67%), Gaps = 7/211 (3%)
Query: 1 MGANM----PKQYLPLLGQPIALYSFYTFSRMVEVKEIVVVCDPSYSDIFEETKEKINVD 56
MG M PKQYL + +PIAL+SF + M E+++++VVC+P Y +F T K+N
Sbjct: 17 MGTRMKNLIPKQYLTIQEKPIALHSFEKLASMPEIEQMIVVCEPQYEQLF--TVYKLNKP 74
Query: 57 LKFSLPGKERQDSVYSGLQEVDFNSELVCIHDSARPLVLSKDVQKVLMDALRVGAAVLGV 116
L F+ PG RQDS+++G++ + N LVCIHDSARP + +++ + +A + GAAVLGV
Sbjct: 75 LIFARPGLRRQDSLWNGIKLIAGNP-LVCIHDSARPFIEIDRIRQTVAEAEKWGAAVLGV 133
Query: 117 PAKATIKEANSESFVVRTLDRKTLWEMQTPQVIKPDLLKKGFELVNREGLEVTDDVSIVE 176
KATIK + F+V T +R LWEMQTPQ+++ LL GF + + L V+DDVS+VE
Sbjct: 134 RVKATIKICEEKQFIVNTPNRAFLWEMQTPQIVRLKLLYDGFSVAQKNELTVSDDVSLVE 193
Query: 177 HLKHPVYITEGSYTNIKVTTPDDLLIAERIL 207
+ PV + EGSY NIK+TTP+DLLIA+ IL
Sbjct: 194 LIDKPVKVVEGSYLNIKITTPEDLLIAQSIL 224
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Catalyzes the formation of 4-diphosphocytidyl-2-C-methyl-D-erythritol from CTP and 2-C-methyl-D-erythritol 4-phosphate (MEP). Protochlamydia amoebophila (strain UWE25) (taxid: 264201) EC: 2 EC: . EC: 7 EC: . EC: 7 EC: . EC: 6 EC: 0 |
| >sp|Q9Z7X5|ISPD_CHLPN 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase OS=Chlamydia pneumoniae GN=ispD PE=3 SV=1 | Back alignment and function description |
|---|
Score = 157 bits (398), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 81/207 (39%), Positives = 122/207 (58%), Gaps = 12/207 (5%)
Query: 1 MGANMPKQYLPLLGQPIALYSFYTFSRMVEVKEIVVVCDPSYSDIFEETKEKINVDLKFS 60
G+ +PKQYLPL G P+ L+S S + ++ E++VVCDPSY + F+E + F+
Sbjct: 17 FGSKIPKQYLPLNGTPLVLHSLKILSSLPQIAEVIVVCDPSYQETFQE------YPVSFA 70
Query: 61 LPGKERQDSVYSGLQEVDFNSELVCIHDSARPLVLSKDVQKVLMDALRVGAAVLGVPAKA 120
+PG+ RQDSV+SGLQ+V + V IHD ARP + ++ +L A ++GA L P
Sbjct: 71 IPGERRQDSVFSGLQQVSY--PWVIIHDGARPFIYPDEIHDLLETAEKIGATALASPIPY 128
Query: 121 TIKEANSESFVVRTLDRKTLWEMQTPQVIKPDLLKKGFELVNREGLEVTDDVSIVEHLKH 180
TIK+ N VRTLDR L + TPQ IK ++L++G L + L + DD+ E +
Sbjct: 129 TIKQRNP----VRTLDRDNLAIIHTPQCIKTEILREGLALAKEKQLTLVDDIEAAEIIGK 184
Query: 181 PVYITEGSYTNIKVTTPDDLLIAERIL 207
P + + IK++ P+DL IA+ +L
Sbjct: 185 PSQLVFNKHPQIKISYPEDLTIAQALL 211
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Catalyzes the formation of 4-diphosphocytidyl-2-C-methyl-D-erythritol from CTP and 2-C-methyl-D-erythritol 4-phosphate (MEP). Chlamydia pneumoniae (taxid: 83558) EC: 2 EC: . EC: 7 EC: . EC: 7 EC: . EC: 6 EC: 0 |
| >sp|Q5L433|ISPD_GEOKA 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase OS=Geobacillus kaustophilus (strain HTA426) GN=ispD PE=3 SV=1 | Back alignment and function description |
|---|
Score = 154 bits (389), Expect = 4e-37, Method: Compositional matrix adjust.
Identities = 87/209 (41%), Positives = 123/209 (58%), Gaps = 4/209 (1%)
Query: 1 MGANMPKQYLPLLGQPIALYSFYTFSRMVEVKEIVVVCDPSYSDIFEETKEKINVDLKFS 60
M A M KQ+L L G+P+ + + F R IV+V +P+ FE+ + + +
Sbjct: 16 MNAGMNKQFLELGGEPLIVRTLNVFERDERCTRIVLVVNPAERSRFEQLLARFRIQKVAA 75
Query: 61 LP--GKERQDSVYSGLQEVDFNSELVCIHDSARPLVLSKDVQKVLMDALRVGAAVLGVPA 118
L G+ERQ SVY+GLQ + E+V IHD ARP V + +++ A++ GAA+ V
Sbjct: 76 LTDGGEERQHSVYNGLQALA-GEEIVLIHDGARPFVRVHHLHELVNAAVQYGAAIPAVRV 134
Query: 119 KATIKEANSESFVVRTLDRKTLWEMQTPQVIKPDLLKKGFELVNREGLEVTDDVSIVEHL 178
K TIK+AN FV +T+DR +LW +QTPQ + L+ + E + G TDD S+VE +
Sbjct: 135 KDTIKKANG-LFVEQTIDRSSLWAVQTPQAFRLSLIMEAHEAAKQAGYLGTDDASLVERI 193
Query: 179 KHPVYITEGSYTNIKVTTPDDLLIAERIL 207
PV I EG Y NIK+TTP+DLL AE IL
Sbjct: 194 GKPVKIIEGDYRNIKLTTPEDLLFAEAIL 222
|
Catalyzes the formation of 4-diphosphocytidyl-2-C-methyl-D-erythritol from CTP and 2-C-methyl-D-erythritol 4-phosphate (MEP). Geobacillus kaustophilus (strain HTA426) (taxid: 235909) EC: 2 EC: . EC: 7 EC: . EC: 7 EC: . EC: 6 EC: 0 |
| >sp|A4J0Y3|ISPD_DESRM 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase OS=Desulfotomaculum reducens (strain MI-1) GN=ispD PE=3 SV=1 | Back alignment and function description |
|---|
Score = 154 bits (388), Expect = 5e-37, Method: Compositional matrix adjust.
Identities = 83/210 (39%), Positives = 127/210 (60%), Gaps = 3/210 (1%)
Query: 1 MGANMPKQYLPLLGQPIALYSFYTFSRMVEVKEIVVVCDPSYSDIFEETKEKINVDLKFS 60
MG + KQYL L +PI ++ ++ ++ IV+V P + +E K N+ K
Sbjct: 17 MGTEVKKQYLKLQDRPILAHTIDALEQVPDITGIVLVVSPGEETLCQELILKGNLFNKIM 76
Query: 61 --LPGKE-RQDSVYSGLQEVDFNSELVCIHDSARPLVLSKDVQKVLMDALRVGAAVLGVP 117
+PG + RQ SVY GL + ++ELV IHD ARPLV ++ ++ +A RVGAA L VP
Sbjct: 77 AVVPGGDHRQTSVYHGLCSLPGDTELVVIHDGARPLVQRAEISHIIKEARRVGAAALAVP 136
Query: 118 AKATIKEANSESFVVRTLDRKTLWEMQTPQVIKPDLLKKGFELVNREGLEVTDDVSIVEH 177
K T+K N + +V+ T +R+ LW +QTPQV +L+ K + +G+ TDD ++VE
Sbjct: 137 VKDTVKLVNDQGYVIATPNREKLWAVQTPQVFNYELILKAHQDAREKGVYATDDCALVEA 196
Query: 178 LKHPVYITEGSYTNIKVTTPDDLLIAERIL 207
L PV + +GSY NIK+TTP+D+++A+ L
Sbjct: 197 LGQPVKLVQGSYENIKITTPEDMVMAQAFL 226
|
Catalyzes the formation of 4-diphosphocytidyl-2-C-methyl-D-erythritol from CTP and 2-C-methyl-D-erythritol 4-phosphate (MEP). Desulfotomaculum reducens (strain MI-1) (taxid: 349161) EC: 2 EC: . EC: 7 EC: . EC: 7 EC: . EC: 6 EC: 0 |
| >sp|Q824I4|ISPD_CHLCV 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase OS=Chlamydophila caviae (strain GPIC) GN=ispD PE=3 SV=2 | Back alignment and function description |
|---|
Score = 150 bits (380), Expect = 5e-36, Method: Compositional matrix adjust.
Identities = 84/207 (40%), Positives = 118/207 (57%), Gaps = 12/207 (5%)
Query: 1 MGANMPKQYLPLLGQPIALYSFYTFSRMVEVKEIVVVCDPSYSDIFEETKEKINVDLKFS 60
GAN PKQYLP G+P+ L++ T + E+ E++VVCD SY IFE +KF+
Sbjct: 18 FGANQPKQYLPFQGEPLILHALKTALHIPEITEVIVVCDVSYRHIFE------GFPVKFA 71
Query: 61 LPGKERQDSVYSGLQEVDFNSELVCIHDSARPLVLSKDVQKVLMDALRVGAAVLGVPAKA 120
GK RQDSV+SGLQ V ++ V IHD RP + +V +++ A + GAA L
Sbjct: 72 ESGKRRQDSVFSGLQHV--SNPWVLIHDGVRPFIYPDEVTELIAVAQQTGAATLVSNVPY 129
Query: 121 TIKEANSESFVVRTLDRKTLWEMQTPQVIKPDLLKKGFELVNREGLEVTDDVSIVEHLKH 180
TIK+ + V+TLDR L + TPQ +K ++L G E +REG+ + DD E L
Sbjct: 130 TIKQRHP----VKTLDRDALSIVHTPQCVKTEILSAGLEFASREGITLVDDTQAAELLDI 185
Query: 181 PVYITEGSYTNIKVTTPDDLLIAERIL 207
PV + + IK+T P+DL IA +L
Sbjct: 186 PVSLVSSKHPQIKITYPEDLTIAHALL 212
|
Catalyzes the formation of 4-diphosphocytidyl-2-C-methyl-D-erythritol from CTP and 2-C-methyl-D-erythritol 4-phosphate (MEP). Chlamydophila caviae (strain GPIC) (taxid: 227941) EC: 2 EC: . EC: 7 EC: . EC: 7 EC: . EC: 6 EC: 0 |
| >sp|A4IJG4|ISPD_GEOTN 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase OS=Geobacillus thermodenitrificans (strain NG80-2) GN=ispD PE=3 SV=1 | Back alignment and function description |
|---|
Score = 149 bits (377), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 85/209 (40%), Positives = 124/209 (59%), Gaps = 4/209 (1%)
Query: 1 MGANMPKQYLPLLGQPIALYSFYTFSRMVEVKEIVVVCDPSYSDIFEETKEKINVD--LK 58
M A M KQ++ L G+P+ + + F IV+V +P+ FE+ E+ + +
Sbjct: 16 MNAGMNKQFIELGGEPLIVRTLKVFDGDERCNGIVLVVNPTERGQFEQLFERYRIRKVVA 75
Query: 59 FSLPGKERQDSVYSGLQEVDFNSELVCIHDSARPLVLSKDVQKVLMDALRVGAAVLGVPA 118
F+ G+ERQ SVY+GLQ + + E+V IHD ARP V + + ++ A++ GAA+ V
Sbjct: 76 FADGGQERQHSVYNGLQALR-SGEIVLIHDGARPFVRIRHLHELADAAVQYGAAIPAVRV 134
Query: 119 KATIKEANSESFVVRTLDRKTLWEMQTPQVIKPDLLKKGFELVNREGLEVTDDVSIVEHL 178
K TIK+ + FV +T+DR +LW +QTPQ + L+ + E + G TDD S+VE L
Sbjct: 135 KDTIKKVDG-LFVEQTIDRSSLWAVQTPQAFRLSLIMEAHEEAKKAGYLGTDDASLVERL 193
Query: 179 KHPVYITEGSYTNIKVTTPDDLLIAERIL 207
PV I EG Y NIK+TTP+DLL AE IL
Sbjct: 194 GRPVKILEGDYRNIKLTTPEDLLFAEAIL 222
|
Catalyzes the formation of 4-diphosphocytidyl-2-C-methyl-D-erythritol from CTP and 2-C-methyl-D-erythritol 4-phosphate (MEP). Geobacillus thermodenitrificans (strain NG80-2) (taxid: 420246) EC: 2 EC: . EC: 7 EC: . EC: 7 EC: . EC: 6 EC: 0 |
| >sp|Q8R7S6|ISPD_THETN 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase OS=Thermoanaerobacter tengcongensis (strain DSM 15242 / JCM 11007 / NBRC 100824 / MB4) GN=ispD PE=3 SV=1 | Back alignment and function description |
|---|
Score = 148 bits (374), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 85/210 (40%), Positives = 123/210 (58%), Gaps = 3/210 (1%)
Query: 1 MGANMPKQYLPLLGQPIALYSFYTFSRMVEVKEIVVVCDPSYSDIFEET---KEKINVDL 57
M ++ K YL + G+P+ YS F + +KEI+VV P ++ +E K N
Sbjct: 16 MNKSLNKVYLSIAGKPVLYYSIKAFDEIEWIKEIIVVTSPEETEYCQENVLEKFYWNKPF 75
Query: 58 KFSLPGKERQDSVYSGLQEVDFNSELVCIHDSARPLVLSKDVQKVLMDALRVGAAVLGVP 117
K G+ERQ SVY+G+ VD + E+V IHD ARPLV + + + + A AA +GVP
Sbjct: 76 KIVKGGEERQYSVYNGISVVDKDCEIVAIHDGARPLVTKEIIMEAIKAAYLYKAAAVGVP 135
Query: 118 AKATIKEANSESFVVRTLDRKTLWEMQTPQVIKPDLLKKGFELVNREGLEVTDDVSIVEH 177
K TIK A+ ++F++ T DR+ LW +QTPQV + +L+ K EG TDD +VE
Sbjct: 136 VKDTIKVADEDNFILDTPDRRYLWAIQTPQVFEKELIVKAHRKALEEGFLGTDDSVLVER 195
Query: 178 LKHPVYITEGSYTNIKVTTPDDLLIAERIL 207
+ V + EG Y NIK+TTP+DL++AE L
Sbjct: 196 MGFKVKLVEGDYKNIKITTPEDLVVAELFL 225
|
Catalyzes the formation of 4-diphosphocytidyl-2-C-methyl-D-erythritol from CTP and 2-C-methyl-D-erythritol 4-phosphate (MEP). Thermoanaerobacter tengcongensis (strain DSM 15242 / JCM 11007 / NBRC 100824 / MB4) (taxid: 273068) EC: 2 EC: . EC: 7 EC: . EC: 7 EC: . EC: 6 EC: 0 |
| >sp|Q253C1|ISPD_CHLFF 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase OS=Chlamydophila felis (strain Fe/C-56) GN=ispD PE=3 SV=1 | Back alignment and function description |
|---|
Score = 148 bits (374), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 84/207 (40%), Positives = 118/207 (57%), Gaps = 12/207 (5%)
Query: 1 MGANMPKQYLPLLGQPIALYSFYTFSRMVEVKEIVVVCDPSYSDIFEETKEKINVDLKFS 60
GAN PKQYLP GQP+ L++ + + E+ EI+VVCD SY IFE +KF+
Sbjct: 18 FGANQPKQYLPFQGQPLILHALNSALLIPEINEIIVVCDASYEHIFE------GYSVKFA 71
Query: 61 LPGKERQDSVYSGLQEVDFNSELVCIHDSARPLVLSKDVQKVLMDALRVGAAVLGVPAKA 120
G RQDSV+SGL V + V +HD RP + +V ++++ A + GAA L
Sbjct: 72 PAGMRRQDSVFSGLHHV--TNPWVLVHDGVRPFIYPDEVSELIVIAQQTGAATLVSNVPY 129
Query: 121 TIKEANSESFVVRTLDRKTLWEMQTPQVIKPDLLKKGFELVNREGLEVTDDVSIVEHLKH 180
TIK+ N V+TLDR +L + TPQ IK ++L +G EL +RE + + DD E L
Sbjct: 130 TIKQRNP----VKTLDRDSLSIVHTPQCIKTEILLEGLELADREQITLVDDTQAAELLGI 185
Query: 181 PVYITEGSYTNIKVTTPDDLLIAERIL 207
PV + + IK+T P+DL IA +L
Sbjct: 186 PVSLVSNKHPQIKITYPEDLTIAHALL 212
|
Catalyzes the formation of 4-diphosphocytidyl-2-C-methyl-D-erythritol from CTP and 2-C-methyl-D-erythritol 4-phosphate (MEP). Chlamydophila felis (strain Fe/C-56) (taxid: 264202) EC: 2 EC: . EC: 7 EC: . EC: 7 EC: . EC: 6 EC: 0 |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 214 | ||||||
| 164604990 | 311 | 2-C-methyl-D-erythritol 4-phosphate cyti | 1.0 | 0.688 | 0.892 | 1e-109 | |
| 164604992 | 311 | 2-C-methyl-D-erythritol 4-phosphate cyti | 1.0 | 0.688 | 0.892 | 1e-108 | |
| 405789860 | 277 | putative 2-C-methyl-D-erythritol 2,4-cyc | 0.971 | 0.750 | 0.884 | 1e-105 | |
| 189017042 | 240 | putative chloroplast 2-C-methyl-D-erythr | 0.985 | 0.879 | 0.876 | 1e-104 | |
| 405789862 | 277 | putative 2-C-methyl-D-erythritol 2,4-cyc | 0.971 | 0.750 | 0.879 | 1e-104 | |
| 224129526 | 309 | predicted protein [Populus trichocarpa] | 0.985 | 0.682 | 0.876 | 1e-104 | |
| 87201352 | 317 | 4-diphosphocytidyl-2-C-methyl-D-erythrit | 0.971 | 0.656 | 0.879 | 1e-104 | |
| 374639355 | 304 | 2-C-methyl-D-erythritol 4-phosphate cyti | 0.971 | 0.684 | 0.865 | 1e-104 | |
| 397133595 | 314 | chloroplast 2-C-methyl-D-erythritol 4-ph | 1.0 | 0.681 | 0.850 | 1e-103 | |
| 206601121 | 311 | 4-diphosphocytidyl-methylerythritol 2-ph | 0.971 | 0.668 | 0.879 | 1e-103 |
| >gi|164604990|dbj|BAF98291.1| 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase [Hevea brasiliensis] | Back alignment and taxonomy information |
|---|
Score = 398 bits (1022), Expect = e-109, Method: Compositional matrix adjust.
Identities = 191/214 (89%), Positives = 202/214 (94%)
Query: 1 MGANMPKQYLPLLGQPIALYSFYTFSRMVEVKEIVVVCDPSYSDIFEETKEKINVDLKFS 60
MGA+MPKQYLPLLGQPIALYSFYTFS+M+EVKEIVVVCDPSY DIFE+ KE INVDLKF+
Sbjct: 96 MGASMPKQYLPLLGQPIALYSFYTFSKMIEVKEIVVVCDPSYQDIFEDAKENINVDLKFA 155
Query: 61 LPGKERQDSVYSGLQEVDFNSELVCIHDSARPLVLSKDVQKVLMDALRVGAAVLGVPAKA 120
LPGKERQDSVYSGL EVD NSELVC+HDSARPLV S DV+KV+ DA GAAVLGVPAKA
Sbjct: 156 LPGKERQDSVYSGLHEVDLNSELVCVHDSARPLVSSADVKKVIEDAWINGAAVLGVPAKA 215
Query: 121 TIKEANSESFVVRTLDRKTLWEMQTPQVIKPDLLKKGFELVNREGLEVTDDVSIVEHLKH 180
TIKEANSESFVVRTLDRKTLWEMQTPQVIKPDLLKKGFELVNR+GLEVTDDVSIVEHLKH
Sbjct: 216 TIKEANSESFVVRTLDRKTLWEMQTPQVIKPDLLKKGFELVNRDGLEVTDDVSIVEHLKH 275
Query: 181 PVYITEGSYTNIKVTTPDDLLIAERILNLSSESS 214
PVYITEGSYTNIKVTTPDDLL+AERILNL+SE S
Sbjct: 276 PVYITEGSYTNIKVTTPDDLLLAERILNLNSEES 309
|
Source: Hevea brasiliensis Species: Hevea brasiliensis Genus: Hevea Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|164604992|dbj|BAF98292.1| 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase [Hevea brasiliensis] | Back alignment and taxonomy information |
|---|
Score = 396 bits (1018), Expect = e-108, Method: Compositional matrix adjust.
Identities = 191/214 (89%), Positives = 203/214 (94%)
Query: 1 MGANMPKQYLPLLGQPIALYSFYTFSRMVEVKEIVVVCDPSYSDIFEETKEKINVDLKFS 60
MGA+MPKQYLPLLGQPIALYSFYTFS+M+EVKEIVVVCDPSY DIFE+ KE INVDLKF+
Sbjct: 96 MGASMPKQYLPLLGQPIALYSFYTFSKMIEVKEIVVVCDPSYQDIFEDAKENINVDLKFA 155
Query: 61 LPGKERQDSVYSGLQEVDFNSELVCIHDSARPLVLSKDVQKVLMDALRVGAAVLGVPAKA 120
LPGKERQDSVYSGLQEVD NSELVC+HDSARPLV S DV+KV+ DA GAAVLGVPAKA
Sbjct: 156 LPGKERQDSVYSGLQEVDLNSELVCVHDSARPLVSSADVKKVIEDAWINGAAVLGVPAKA 215
Query: 121 TIKEANSESFVVRTLDRKTLWEMQTPQVIKPDLLKKGFELVNREGLEVTDDVSIVEHLKH 180
TIKEANSESFVVRTLDRKTLWEMQTPQVIKPDLLKKGFELV+R+GLEVTDDVSIVEHLKH
Sbjct: 216 TIKEANSESFVVRTLDRKTLWEMQTPQVIKPDLLKKGFELVSRDGLEVTDDVSIVEHLKH 275
Query: 181 PVYITEGSYTNIKVTTPDDLLIAERILNLSSESS 214
PVYITEGSYTNIKVTTPDDLL+AERILNL+SE S
Sbjct: 276 PVYITEGSYTNIKVTTPDDLLLAERILNLNSEES 309
|
Source: Hevea brasiliensis Species: Hevea brasiliensis Genus: Hevea Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|405789860|gb|AFS28673.1| putative 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase, partial [Olea europaea] | Back alignment and taxonomy information |
|---|
Score = 386 bits (992), Expect = e-105, Method: Compositional matrix adjust.
Identities = 184/208 (88%), Positives = 197/208 (94%)
Query: 1 MGANMPKQYLPLLGQPIALYSFYTFSRMVEVKEIVVVCDPSYSDIFEETKEKINVDLKFS 60
MGA+MPKQYLPLLGQPIALYSFYTFS+M EVKEIVVVCDPSY DIFE+ K+ I+VDLKF+
Sbjct: 62 MGASMPKQYLPLLGQPIALYSFYTFSKMPEVKEIVVVCDPSYQDIFEDAKDSIHVDLKFA 121
Query: 61 LPGKERQDSVYSGLQEVDFNSELVCIHDSARPLVLSKDVQKVLMDALRVGAAVLGVPAKA 120
LPGKERQDSVYSGLQE+D NSELVCIHDSARPLVL++DV KVL D +GAAVLGVPAKA
Sbjct: 122 LPGKERQDSVYSGLQEIDLNSELVCIHDSARPLVLAEDVAKVLKDGWLIGAAVLGVPAKA 181
Query: 121 TIKEANSESFVVRTLDRKTLWEMQTPQVIKPDLLKKGFELVNREGLEVTDDVSIVEHLKH 180
TIKEAN ESFVV+TLDRKTLWEMQTPQVIKPDLLKKGFELVNREGLEVTDDVSI+EHLKH
Sbjct: 182 TIKEANGESFVVKTLDRKTLWEMQTPQVIKPDLLKKGFELVNREGLEVTDDVSIIEHLKH 241
Query: 181 PVYITEGSYTNIKVTTPDDLLIAERILN 208
PVYITEGSYTNIKVTTPDDLL+AERILN
Sbjct: 242 PVYITEGSYTNIKVTTPDDLLLAERILN 269
|
Source: Olea europaea Species: Olea europaea Genus: Olea Family: Oleaceae Order: Lamiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|189017042|gb|ACD70398.1| putative chloroplast 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 384 bits (987), Expect = e-104, Method: Compositional matrix adjust.
Identities = 185/211 (87%), Positives = 198/211 (93%)
Query: 1 MGANMPKQYLPLLGQPIALYSFYTFSRMVEVKEIVVVCDPSYSDIFEETKEKINVDLKFS 60
MGANMPKQYLPLLGQPIALYS YTFS M EVKEI+VVCDPSY DIFE+++E+INVDLKF+
Sbjct: 30 MGANMPKQYLPLLGQPIALYSLYTFSEMDEVKEIIVVCDPSYKDIFEDSQEQINVDLKFA 89
Query: 61 LPGKERQDSVYSGLQEVDFNSELVCIHDSARPLVLSKDVQKVLMDALRVGAAVLGVPAKA 120
LPGKERQDSVYSGLQEVD NSELVCIHDSARPLVLS+DV+KVL D GAAVLGVP KA
Sbjct: 90 LPGKERQDSVYSGLQEVDLNSELVCIHDSARPLVLSEDVEKVLKDGWINGAAVLGVPVKA 149
Query: 121 TIKEANSESFVVRTLDRKTLWEMQTPQVIKPDLLKKGFELVNREGLEVTDDVSIVEHLKH 180
TIKEA+ ESFVVRTLDRKTLWEMQTPQV+KP+LLKKGFELVNREGLEVTDDVSIVEHLKH
Sbjct: 150 TIKEADGESFVVRTLDRKTLWEMQTPQVMKPELLKKGFELVNREGLEVTDDVSIVEHLKH 209
Query: 181 PVYITEGSYTNIKVTTPDDLLIAERILNLSS 211
PVYITEGSYTNIKVTTPDDLL+AERIL+ SS
Sbjct: 210 PVYITEGSYTNIKVTTPDDLLLAERILSTSS 240
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|405789862|gb|AFS28674.1| putative 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase, partial [Olea europaea] | Back alignment and taxonomy information |
|---|
Score = 384 bits (986), Expect = e-104, Method: Compositional matrix adjust.
Identities = 183/208 (87%), Positives = 196/208 (94%)
Query: 1 MGANMPKQYLPLLGQPIALYSFYTFSRMVEVKEIVVVCDPSYSDIFEETKEKINVDLKFS 60
MGA+MPKQYLPLLGQPIALYSFYTFS+M EVKEIVVVCDPSY DIFE+ K+ I+VDLKF+
Sbjct: 62 MGASMPKQYLPLLGQPIALYSFYTFSKMPEVKEIVVVCDPSYQDIFEDAKDSIHVDLKFA 121
Query: 61 LPGKERQDSVYSGLQEVDFNSELVCIHDSARPLVLSKDVQKVLMDALRVGAAVLGVPAKA 120
LPGKERQDSVYSGLQE+D NSELVCIHDSARPLVL++DV KVL D +GAAVLGVPAKA
Sbjct: 122 LPGKERQDSVYSGLQEIDLNSELVCIHDSARPLVLAEDVAKVLKDGWLIGAAVLGVPAKA 181
Query: 121 TIKEANSESFVVRTLDRKTLWEMQTPQVIKPDLLKKGFELVNREGLEVTDDVSIVEHLKH 180
TIKEAN ESFVV+TLDRK LWEMQTPQVIKPDLLKKGFELVNREGLEVTDDVSI+EHLKH
Sbjct: 182 TIKEANGESFVVKTLDRKMLWEMQTPQVIKPDLLKKGFELVNREGLEVTDDVSIIEHLKH 241
Query: 181 PVYITEGSYTNIKVTTPDDLLIAERILN 208
PVYITEGSYTNIKVTTPDDLL+AERILN
Sbjct: 242 PVYITEGSYTNIKVTTPDDLLLAERILN 269
|
Source: Olea europaea Species: Olea europaea Genus: Olea Family: Oleaceae Order: Lamiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224129526|ref|XP_002328738.1| predicted protein [Populus trichocarpa] gi|222839036|gb|EEE77387.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 384 bits (986), Expect = e-104, Method: Compositional matrix adjust.
Identities = 185/211 (87%), Positives = 198/211 (93%)
Query: 1 MGANMPKQYLPLLGQPIALYSFYTFSRMVEVKEIVVVCDPSYSDIFEETKEKINVDLKFS 60
MGANMPKQYLPLLGQPIALYS YTFS M EVKEI+VVCDPSY DIFE+++E+INVDLKF+
Sbjct: 99 MGANMPKQYLPLLGQPIALYSLYTFSEMDEVKEIIVVCDPSYKDIFEDSQEQINVDLKFA 158
Query: 61 LPGKERQDSVYSGLQEVDFNSELVCIHDSARPLVLSKDVQKVLMDALRVGAAVLGVPAKA 120
LPGKERQDSVYSGLQEVD NSELVCIHDSARPLVLS+DV+KVL D GAAVLGVP KA
Sbjct: 159 LPGKERQDSVYSGLQEVDLNSELVCIHDSARPLVLSEDVEKVLKDGWINGAAVLGVPVKA 218
Query: 121 TIKEANSESFVVRTLDRKTLWEMQTPQVIKPDLLKKGFELVNREGLEVTDDVSIVEHLKH 180
TIKEA+ ESFVVRTLDRKTLWEMQTPQV+KP+LLKKGFELVNREGLEVTDDVSIVEHLKH
Sbjct: 219 TIKEADGESFVVRTLDRKTLWEMQTPQVMKPELLKKGFELVNREGLEVTDDVSIVEHLKH 278
Query: 181 PVYITEGSYTNIKVTTPDDLLIAERILNLSS 211
PVYITEGSYTNIKVTTPDDLL+AERIL+ SS
Sbjct: 279 PVYITEGSYTNIKVTTPDDLLLAERILSTSS 309
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|87201352|gb|ABB88837.2| 4-diphosphocytidyl-2-C-methyl-D-erythritol synthase [Stevia rebaudiana] | Back alignment and taxonomy information |
|---|
Score = 383 bits (983), Expect = e-104, Method: Compositional matrix adjust.
Identities = 183/208 (87%), Positives = 195/208 (93%)
Query: 1 MGANMPKQYLPLLGQPIALYSFYTFSRMVEVKEIVVVCDPSYSDIFEETKEKINVDLKFS 60
MGA+MPKQYLPLLGQPIALYSFYTFSRM EVKEIVVVCDPSY DIFE+ ++ I+VDLKF+
Sbjct: 103 MGASMPKQYLPLLGQPIALYSFYTFSRMREVKEIVVVCDPSYQDIFEDARDNISVDLKFA 162
Query: 61 LPGKERQDSVYSGLQEVDFNSELVCIHDSARPLVLSKDVQKVLMDALRVGAAVLGVPAKA 120
LPGKERQDSV+SGLQ +D SELVCIHDSARPLV S DV KVL D LRVGA+VLGVPAKA
Sbjct: 163 LPGKERQDSVFSGLQSIDLASELVCIHDSARPLVTSGDVLKVLNDGLRVGASVLGVPAKA 222
Query: 121 TIKEANSESFVVRTLDRKTLWEMQTPQVIKPDLLKKGFELVNREGLEVTDDVSIVEHLKH 180
TIKE NSESFVV+TLDRKTLWEMQTPQVIKPDLLKKGFELVNREGLEVTDDVSIVEHLKH
Sbjct: 223 TIKEGNSESFVVKTLDRKTLWEMQTPQVIKPDLLKKGFELVNREGLEVTDDVSIVEHLKH 282
Query: 181 PVYITEGSYTNIKVTTPDDLLIAERILN 208
PVYIT+GSYTNIKVTTPDDLL+AERILN
Sbjct: 283 PVYITQGSYTNIKVTTPDDLLLAERILN 310
|
Source: Stevia rebaudiana Species: Stevia rebaudiana Genus: Stevia Family: Asteraceae Order: Asterales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|374639355|gb|AEZ55666.1| 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase [Salvia miltiorrhiza] | Back alignment and taxonomy information |
|---|
Score = 382 bits (980), Expect = e-104, Method: Compositional matrix adjust.
Identities = 180/208 (86%), Positives = 197/208 (94%)
Query: 1 MGANMPKQYLPLLGQPIALYSFYTFSRMVEVKEIVVVCDPSYSDIFEETKEKINVDLKFS 60
MGA+MPKQYLPLLGQPIALYSFYTFS+M EVKEI+VVCDPSY DIFE+ ++ I++DLKF+
Sbjct: 94 MGASMPKQYLPLLGQPIALYSFYTFSKMPEVKEIIVVCDPSYQDIFEDARDNIHIDLKFA 153
Query: 61 LPGKERQDSVYSGLQEVDFNSELVCIHDSARPLVLSKDVQKVLMDALRVGAAVLGVPAKA 120
LPGKERQDSVYSGL+E+D +SELVCIHDSARPLVL+ DV KVL D R+GAAVLGVPAKA
Sbjct: 154 LPGKERQDSVYSGLEEIDLDSELVCIHDSARPLVLTSDVTKVLKDGKRIGAAVLGVPAKA 213
Query: 121 TIKEANSESFVVRTLDRKTLWEMQTPQVIKPDLLKKGFELVNREGLEVTDDVSIVEHLKH 180
TIKEANSESFVV+TLDRKTLWEMQTPQVI+PDLLKKGFE VNREGLEVTDDVSIVEHLKH
Sbjct: 214 TIKEANSESFVVKTLDRKTLWEMQTPQVIEPDLLKKGFEYVNREGLEVTDDVSIVEHLKH 273
Query: 181 PVYITEGSYTNIKVTTPDDLLIAERILN 208
PVYITEGSYTNIKVTTPDDLL+AERILN
Sbjct: 274 PVYITEGSYTNIKVTTPDDLLLAERILN 301
|
Source: Salvia miltiorrhiza Species: Salvia miltiorrhiza Genus: Salvia Family: Lamiaceae Order: Lamiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|397133595|gb|AFO10121.1| chloroplast 2-C-methyl-D-erythritol 4-phosphate cytidyltransferase [Rauvolfia verticillata] | Back alignment and taxonomy information |
|---|
Score = 380 bits (976), Expect = e-103, Method: Compositional matrix adjust.
Identities = 182/214 (85%), Positives = 198/214 (92%)
Query: 1 MGANMPKQYLPLLGQPIALYSFYTFSRMVEVKEIVVVCDPSYSDIFEETKEKINVDLKFS 60
MGA+MPKQYLPLLGQPIALYSFYTF+RM+EVKEIVVVCDPSY DIFE KEKI VDLKF+
Sbjct: 100 MGASMPKQYLPLLGQPIALYSFYTFARMLEVKEIVVVCDPSYQDIFEGAKEKIEVDLKFA 159
Query: 61 LPGKERQDSVYSGLQEVDFNSELVCIHDSARPLVLSKDVQKVLMDALRVGAAVLGVPAKA 120
LPGKERQDSVYSG+Q VD ++ELVCIHD+ARPLVL++D +KVL D L +GAAVLGVPAKA
Sbjct: 160 LPGKERQDSVYSGVQAVDLSAELVCIHDTARPLVLAEDAEKVLKDGLLIGAAVLGVPAKA 219
Query: 121 TIKEANSESFVVRTLDRKTLWEMQTPQVIKPDLLKKGFELVNREGLEVTDDVSIVEHLKH 180
TIKEA+S+ FVVRTLDRK LWEMQTPQVIKPDLLKKGFELVNRE LEVTDDVSIVEHLKH
Sbjct: 220 TIKEADSKFFVVRTLDRKKLWEMQTPQVIKPDLLKKGFELVNRENLEVTDDVSIVEHLKH 279
Query: 181 PVYITEGSYTNIKVTTPDDLLIAERILNLSSESS 214
PVYITEGSYTNIKVTTPDDLL+AERILN +S S
Sbjct: 280 PVYITEGSYTNIKVTTPDDLLLAERILNPTSAKS 313
|
Source: Rauvolfia verticillata Species: Rauvolfia verticillata Genus: Rauvolfia Family: Apocynaceae Order: Gentianales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|206601121|gb|ACI16377.1| 4-diphosphocytidyl-methylerythritol 2-phosphate synthase [Catharanthus roseus] | Back alignment and taxonomy information |
|---|
Score = 380 bits (976), Expect = e-103, Method: Compositional matrix adjust.
Identities = 183/208 (87%), Positives = 197/208 (94%)
Query: 1 MGANMPKQYLPLLGQPIALYSFYTFSRMVEVKEIVVVCDPSYSDIFEETKEKINVDLKFS 60
MGA+MPKQYLPLLGQPIALYS YTFSRM EVKEIVVVCDPSY DIFE+TK KI VDLKF+
Sbjct: 100 MGASMPKQYLPLLGQPIALYSLYTFSRMPEVKEIVVVCDPSYQDIFEDTKAKIQVDLKFA 159
Query: 61 LPGKERQDSVYSGLQEVDFNSELVCIHDSARPLVLSKDVQKVLMDALRVGAAVLGVPAKA 120
LPGKERQDSVYSGLQ VD ++ELVCIHDSARPLVL++DV+KVL D L +GAAVLGVPAKA
Sbjct: 160 LPGKERQDSVYSGLQAVDLSAELVCIHDSARPLVLAEDVEKVLKDGLSIGAAVLGVPAKA 219
Query: 121 TIKEANSESFVVRTLDRKTLWEMQTPQVIKPDLLKKGFELVNREGLEVTDDVSIVEHLKH 180
TIKEA+S+SFVV+TLDRKTLWEMQTPQVIKPDLLKKGFELVNRE LEVTDDVSIVE+LKH
Sbjct: 220 TIKEADSKSFVVKTLDRKTLWEMQTPQVIKPDLLKKGFELVNRENLEVTDDVSIVEYLKH 279
Query: 181 PVYITEGSYTNIKVTTPDDLLIAERILN 208
PVYITEGSYTNIKVTTPDDLL+AERILN
Sbjct: 280 PVYITEGSYTNIKVTTPDDLLVAERILN 307
|
Source: Catharanthus roseus Species: Catharanthus roseus Genus: Catharanthus Family: Apocynaceae Order: Gentianales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 214 | ||||||
| TAIR|locus:2065264 | 302 | ISPD [Arabidopsis thaliana (ta | 0.985 | 0.698 | 0.805 | 4.1e-88 | |
| TIGR_CMR|BA_0084 | 226 | BA_0084 "2-C-methyl-D-erythrit | 0.981 | 0.929 | 0.378 | 8.8e-31 | |
| TIGR_CMR|DET_0059 | 227 | DET_0059 "2-C-methyl-D-erythri | 0.943 | 0.889 | 0.387 | 1.5e-28 | |
| TIGR_CMR|SO_3438 | 249 | SO_3438 "4-diphosphocytidyl-2C | 0.957 | 0.823 | 0.346 | 1.1e-25 | |
| TIGR_CMR|CHY_2342 | 233 | CHY_2342 "2-C-methyl-D-erythri | 0.929 | 0.854 | 0.317 | 2.2e-25 | |
| TIGR_CMR|GSU_3368 | 232 | GSU_3368 "4-diphosphocytidyl-2 | 0.957 | 0.883 | 0.331 | 2.3e-23 | |
| TIGR_CMR|CPS_1072 | 243 | CPS_1072 "2-C-methyl-D-erythri | 0.995 | 0.876 | 0.299 | 7e-22 | |
| UNIPROTKB|Q46893 | 236 | ispD "4-diphosphocytidyl-2C-me | 0.934 | 0.847 | 0.326 | 1.1e-21 | |
| UNIPROTKB|Q9KUJ2 | 232 | ispD "2-C-methyl-D-erythritol | 0.971 | 0.896 | 0.315 | 1.5e-21 | |
| TIGR_CMR|VC_0528 | 232 | VC_0528 "4-diphosphocytidyl-2C | 0.971 | 0.896 | 0.315 | 1.5e-21 |
| TAIR|locus:2065264 ISPD [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 880 (314.8 bits), Expect = 4.1e-88, P = 4.1e-88
Identities = 170/211 (80%), Positives = 192/211 (90%)
Query: 1 MGANMPKQYLPLLGQPIALYSFYTFSRMVEVKEIVVVCDPSYSDIFEETKEKINVDLKFS 60
M +MPKQY+PLLGQPIALYSF+TFSRM EVKEIVVVCDP + DIFEE +E I+VDL+F+
Sbjct: 92 MKMSMPKQYIPLLGQPIALYSFFTFSRMPEVKEIVVVCDPFFRDIFEEYEESIDVDLRFA 151
Query: 61 LPGKERQDSVYSGLQEVDFNSELVCIHDSARPLVLSKDVQKVLMDALRVGAAVLGVPAKA 120
+PGKERQDSVYSGLQE+D NSELVCIHDSARPLV ++DV+KVL D VGAAVLGVPAKA
Sbjct: 152 IPGKERQDSVYSGLQEIDVNSELVCIHDSARPLVNTEDVEKVLKDGSAVGAAVLGVPAKA 211
Query: 121 TIKEANSESFVVRTLDRKTLWEMQTPQVIKPDLLKKGFELVNREGLEVTDDVSIVEHLKH 180
TIKE NS+S VV+TLDRKTLWEMQTPQVIKP+LLKKGFELV EGLEVTDDVSIVE+LKH
Sbjct: 212 TIKEVNSDSLVVKTLDRKTLWEMQTPQVIKPELLKKGFELVKSEGLEVTDDVSIVEYLKH 271
Query: 181 PVYITEGSYTNIKVTTPDDLLIAERILNLSS 211
PVY+++GSYTNIKVTTPDDLL+AERIL+ S
Sbjct: 272 PVYVSQGSYTNIKVTTPDDLLLAERILSEDS 302
|
|
| TIGR_CMR|BA_0084 BA_0084 "2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase" [Bacillus anthracis str. Ames (taxid:198094)] | Back alignment and assigned GO terms |
|---|
Score = 339 (124.4 bits), Expect = 8.8e-31, P = 8.8e-31
Identities = 81/214 (37%), Positives = 118/214 (55%)
Query: 1 MGANMPKQYLPLLGQPIALYSFYTFSRMVEVKEIVVVCDPSYSDIFEETKEKINVD--LK 58
MGA K +L + PI +++ F + K I++ + FEE +K V+ ++
Sbjct: 15 MGAGKNKLFLLINEVPIIVHTLRAFEKDKACKNIIMAINEEERPYFEELMQKYPVEKPVQ 74
Query: 59 FSLPGKERQDSVYSGLQEVDFNSELVCIHDSARPLVLSKDVQKVLMDALRVGAAVLGVPA 118
F G ERQDSVY+ +Q + E V +HD ARP V +K +Q VL A + GA++ VP
Sbjct: 75 FIQGGAERQDSVYNAIQHTT-DVEYVLVHDGARPFVTNKVIQDVLTAAEKYGASICAVPV 133
Query: 119 KATIKEANSESFVVRTLDRKTLWEMQTPQVIKPDLLKKGFELVNREGLEVTDDVSIVEHL 178
K T+K+ + VV T++R L +QTPQ LL + + TDD S+VE +
Sbjct: 134 KDTVKKVE-QGVVVETVERSQLKAVQTPQGFSVSLLLEAHRSAKQSCFLGTDDASLVERI 192
Query: 179 KHPVYITEGSYTNIKVTTPDDLLIAERILNLSSE 212
V + EGSY NIKVTTP+DLLIAE L++ +
Sbjct: 193 GKQVGVVEGSYYNIKVTTPEDLLIAESFLHVQKK 226
|
|
| TIGR_CMR|DET_0059 DET_0059 "2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase" [Dehalococcoides ethenogenes 195 (taxid:243164)] | Back alignment and assigned GO terms |
|---|
Score = 318 (117.0 bits), Expect = 1.5e-28, P = 1.5e-28
Identities = 81/209 (38%), Positives = 118/209 (56%)
Query: 1 MGANMPKQYLPLLGQPIALYSFYTFSRMVEVKEI-VVVCDPSYSDIFEETKE-KINVDLK 58
MG K + L G+P+ ++ F + E+ +I +VV + + E KE + +
Sbjct: 20 MGGQ-DKIFARLSGKPVLAHTLSVFQQSPEIDDIALVVSEHNLKKAKELVKEYNFSKVIA 78
Query: 59 FSLPGKERQDSVYSGLQEVDFNSELVCIHDSARPLVLSKDVQKVLMDALRVGAAVLGVPA 118
G+ RQDSV SGL + + V IHD ARPL+ + + L A G+AV VP
Sbjct: 79 ICSGGELRQDSVSSGLTAL-CDCGWVLIHDGARPLLDPVSIPEGLEAAKLCGSAVAAVPL 137
Query: 119 KATIKEANSESFVVRTLDRKTLWEMQTPQVIKPDLLKKGFELVNREGLEVTDDVSIVEHL 178
K T+KE + E V +TL R+ L +QTPQV + D+++K + R G+ TDD +VE L
Sbjct: 138 KDTVKEISPEGLVEKTLPREKLISVQTPQVFRADIIQKAYR---RVGITATDDAQLVEKL 194
Query: 179 KHPVYITEGSYTNIKVTTPDDLLIAERIL 207
K PV I G+Y NIK+TTP+DLL+AE +L
Sbjct: 195 KLPVKIFSGAYANIKITTPEDLLMAEILL 223
|
|
| TIGR_CMR|SO_3438 SO_3438 "4-diphosphocytidyl-2C-methyl-D-erythritol synthase" [Shewanella oneidensis MR-1 (taxid:211586)] | Back alignment and assigned GO terms |
|---|
Score = 291 (107.5 bits), Expect = 1.1e-25, P = 1.1e-25
Identities = 72/208 (34%), Positives = 109/208 (52%)
Query: 1 MGANMPKQYLPLLGQPIALYSFYTFSRMVEVKEIVVVCDPSYSDIFEETKEKINVDLKFS 60
MGA PKQYLPLLGQ I ++ + +++V P +D + + K + LK
Sbjct: 39 MGAGKPKQYLPLLGQSILAHTLDKLLSHPLISQVIVALHPEDADFYALPQAK-HPKLKTV 97
Query: 61 LPGKERQDSVYSGLQEVDFNSELVCIHDSARPLVLSKDVQKVLMDALRVG-AAVLGVPAK 119
+ G ER +SV + L + NS + +HD+ARP +++ D+ K+L ++ A+L +P +
Sbjct: 98 IGGSERANSVLAALDKAPDNSWAL-VHDAARPCLMASDIDKLLTSRVQFPQGAILAMPVR 156
Query: 120 ATIKEANSESFVVRTLDRKTLWEMQTPQVIKPDLLKKGFELVNREGLEVTDDVSIVEHLK 179
T+K ANS + T+ R LW TPQ+ LL+ + G VTD+ S +E
Sbjct: 157 DTMKRANSLGEINSTVCRDNLWHALTPQLFPTSLLRLHLQGALNAGAVVTDEASAMEWAG 216
Query: 180 HPVYITEGSYTNIKVTTPDDLLIAERIL 207
+ G NIKVT PDDL +AE L
Sbjct: 217 ISPGLVAGRADNIKVTHPDDLELAELFL 244
|
|
| TIGR_CMR|CHY_2342 CHY_2342 "2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase" [Carboxydothermus hydrogenoformans Z-2901 (taxid:246194)] | Back alignment and assigned GO terms |
|---|
Score = 288 (106.4 bits), Expect = 2.2e-25, P = 2.2e-25
Identities = 66/208 (31%), Positives = 112/208 (53%)
Query: 2 GANMPKQYLPLLGQPIALYSFYTFSRMVEVKEIVVVCDPSYSDIFEETKEKINV-DLKFS 60
G PKQ+L L G P+ + + + V ++V+ +Y ++ + + N+ +K +
Sbjct: 18 GGEKPKQFLELSGIPVIIITLKRMVNLPIVGQVVLTVPENYIEVAGDLLSRYNLAGIKLT 77
Query: 61 LPGKERQDSVYSGLQEVDFNSELVCIHDSARPL----VLSKDVQKVLMDALRVGAAVLGV 116
G R++SV G++ + N ++ +HD RP LS+ V+K L + G A+L V
Sbjct: 78 AGGTTRRESVLRGIRALTGNFSIIAVHDGVRPFFPKGALSEGVKK-LSEGY--GGAILAV 134
Query: 117 PAKATIKEANSESFVVRTLDRKTLWEMQTPQVIKPDLLKKGFELVNREGLEVTDDVSIVE 176
P + T+KE ++ V+ TLDR L+ +QTPQ+ + + L KG L ++ L+ DD +VE
Sbjct: 135 PLRDTVKEVK-DNVVISTLDRSRLYAVQTPQIFRREALLKGHALGEKQHLDAVDDSILVE 193
Query: 177 HLKHPVYITEGSYTNIKVTTPDDLLIAE 204
V + G Y N+K+T P+DL AE
Sbjct: 194 LCGETVAVIPGDYKNLKITWPEDLEFAE 221
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| TIGR_CMR|GSU_3368 GSU_3368 "4-diphosphocytidyl-2C-methyl-D-erythritol synthase" [Geobacter sulfurreducens PCA (taxid:243231)] | Back alignment and assigned GO terms |
|---|
Score = 269 (99.8 bits), Expect = 2.3e-23, P = 2.3e-23
Identities = 71/214 (33%), Positives = 109/214 (50%)
Query: 1 MGANMPKQYLPLLGQPIALYSFYTFSRMVEVKEIVVVCDPSYSDIF--EETKEKINVDLK 58
MGA++ KQYL L G+PI ++ F V I V+ P F + E+
Sbjct: 16 MGASINKQYLILAGRPILAHTLSVFEGASFVDGIFVIT-PEDEIPFCRDHVVERYGFTKV 74
Query: 59 FSLP--GKERQDSVYSGLQEVD---FNSELVCIHDSARPLVLSKDVQKVLMDALRVGAAV 113
+ G ERQ SV +GL+ ++ + +++ IHD RP V + + + A A+
Sbjct: 75 RGIVAGGAERQHSVLNGLRAMEGTVADDDVILIHDGVRPFVSTDVLARATAVAREDDGAL 134
Query: 114 LGVPAKATIKEANSESFVVRTLDRKTLWEMQTPQVIKPDLLKKGFELVNREGLEVTDDVS 173
+ VPAK T+K + + T R+TLW QTPQ + +++ E+ + E TDD
Sbjct: 135 VAVPAKDTVKTVE-DGIITGTPPRETLWLAQTPQAFRYAVIRAAHEIADAERFLGTDDAM 193
Query: 174 IVEHLKHPVYITEGSYTNIKVTTPDDLLIAERIL 207
+VE L V I G Y NIK+TTP+D+++AE L
Sbjct: 194 LVERLGRSVRIVVGDYRNIKITTPEDMVLAEAFL 227
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| TIGR_CMR|CPS_1072 CPS_1072 "2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase" [Colwellia psychrerythraea 34H (taxid:167879)] | Back alignment and assigned GO terms |
|---|
Score = 255 (94.8 bits), Expect = 7.0e-22, P = 7.0e-22
Identities = 67/224 (29%), Positives = 111/224 (49%)
Query: 1 MGANMPKQYLPLLGQPIALYSFYTFSRMVEVKEIVVVCDPSYSDIFEETKEKINVDLKFS 60
M AN PKQYL + + I ++ + +++V F E++ + D+
Sbjct: 20 MQANCPKQYLRINNETILSHTVMRLLSHPLISQVIVALGTE-DQYFAESELAHHKDIIRV 78
Query: 61 LPGKERQDSVYSGLQEVDFNS-ELVCIHDSARPLVLSKDVQKVLMDALRVG-AAVLGVPA 118
G ER +SV +GL+ VD + V +HD+ARP V +D+ K++ LR +L P
Sbjct: 79 NGGTERVNSVLNGLKAVDSDKYPWVLVHDAARPCVSHQDIDKLITRCLRKDYGGILATPV 138
Query: 119 KATIKE-------ANSESFVVR-TLDRKTLWEMQTPQVIKPDLLKKGFELVNREGLEVTD 170
+ T+K A ++ ++ T++R+ LW TPQ+ K D L E L++TD
Sbjct: 139 RDTMKRGVLIKDSAKGDNTIIESTVEREQLWHALTPQMYKTDELTLAIEQALENSLKITD 198
Query: 171 DVSIVEHLKHPVYITEGSYTNIKVTTPDDLLIAERILNLSSESS 214
+ S +E P + S NIK+T P+DL +AE LN + ++
Sbjct: 199 EASAIEQANLPSLLVSASSENIKITHPNDLALAEFYLNKQANNT 242
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| UNIPROTKB|Q46893 ispD "4-diphosphocytidyl-2C-methyl-D-erythritol synthetase monomer" [Escherichia coli K-12 (taxid:83333)] | Back alignment and assigned GO terms |
|---|
Score = 253 (94.1 bits), Expect = 1.1e-21, P = 1.1e-21
Identities = 68/208 (32%), Positives = 103/208 (49%)
Query: 1 MGANMPKQYLPLLGQPIALYSFYTFSRMVEVKEIVVVCDPSYSDIFEETKEKINVDLKFS 60
M PKQYL + Q I +S + VK +V+ P S F + + +
Sbjct: 21 MQTECPKQYLSIGNQTILEHSVHALLAHPRVKRVVIAISPGDSR-FAQLPLANHPQITVV 79
Query: 61 LPGKERQDSVYSGLQEVDFNSELVCIHDSARPLVLSKDVQKVLM--DALRVGAAVLGVPA 118
G ER DSV +GL+ +++ V +HD+ARP + D+ ++L + R G +L P
Sbjct: 80 DGGDERADSVLAGLKAAG-DAQWVLVHDAARPCLHQDDLARLLALSETSRTGG-ILAAPV 137
Query: 119 KATIKEAN-SESFVVRTLDRKTLWEMQTPQVIKPDLLKKGFELVNREGLEVTDDVSIVEH 177
+ T+K A ++ + T+DR LW TPQ +LL EG +TD+ S +E+
Sbjct: 138 RDTMKRAEPGKNAIAHTVDRNGLWHALTPQFFPRELLHDCLTRALNEGATITDEASALEY 197
Query: 178 LK-HPVYITEGSYTNIKVTTPDDLLIAE 204
HP + EG NIKVT P+DL +AE
Sbjct: 198 CGFHP-QLVEGRADNIKVTRPEDLALAE 224
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| UNIPROTKB|Q9KUJ2 ispD "2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase" [Vibrio cholerae O1 biovar El Tor str. N16961 (taxid:243277)] | Back alignment and assigned GO terms |
|---|
Score = 252 (93.8 bits), Expect = 1.5e-21, P = 1.5e-21
Identities = 70/222 (31%), Positives = 113/222 (50%)
Query: 1 MGANMPKQYLPLLGQPIALYSFYTFSRMVEVKEIVVVC---DPSYSDI-FEETKEKINVD 56
M A+ PKQYL LL + + ++ ++ +VV DP ++++ I VD
Sbjct: 17 MQADRPKQYLTLLDKTVLEHTVEHLLEHPLIEHVVVAVSADDPYFANLPLAHHPRVIRVD 76
Query: 57 LKFSLPGKERQDSVYSGLQEVDFN--SELVCIHDSARPLVLSKDVQKVLMDALR--VGAA 112
GKER DSV S L+ V + SE V +HD+ARP V D+ +++ AL +GA
Sbjct: 77 -----GGKERADSVLSALEYVCQHRLSEWVLVHDAARPCVTHADITQLITTALAHPIGA- 130
Query: 113 VLGVPAKATIKEANSESFVVRTLDRKTLWEMQTPQVIKPDLLKKGFELVNREGLEVTDDV 172
+L P + T+K + +V T+DR LW TPQ+ + L++ ++ + +TD+
Sbjct: 131 ILASPVRDTMKRGDHLQQIVHTVDRTALWHALTPQMFRAQSLRERLFAALQQQVTITDEA 190
Query: 173 SIVEHLKHPVYITEGSYTNIKVTTPDDLLIAERILNLSSESS 214
S E + G N+K+T P+DL +AE L+ + E S
Sbjct: 191 SAFEWRGEKPALVAGRADNLKITQPEDLALAEFYLSRNKEKS 232
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| TIGR_CMR|VC_0528 VC_0528 "4-diphosphocytidyl-2C-methyl-D-erythritol synthase" [Vibrio cholerae O1 biovar El Tor (taxid:686)] | Back alignment and assigned GO terms |
|---|
Score = 252 (93.8 bits), Expect = 1.5e-21, P = 1.5e-21
Identities = 70/222 (31%), Positives = 113/222 (50%)
Query: 1 MGANMPKQYLPLLGQPIALYSFYTFSRMVEVKEIVVVC---DPSYSDI-FEETKEKINVD 56
M A+ PKQYL LL + + ++ ++ +VV DP ++++ I VD
Sbjct: 17 MQADRPKQYLTLLDKTVLEHTVEHLLEHPLIEHVVVAVSADDPYFANLPLAHHPRVIRVD 76
Query: 57 LKFSLPGKERQDSVYSGLQEVDFN--SELVCIHDSARPLVLSKDVQKVLMDALR--VGAA 112
GKER DSV S L+ V + SE V +HD+ARP V D+ +++ AL +GA
Sbjct: 77 -----GGKERADSVLSALEYVCQHRLSEWVLVHDAARPCVTHADITQLITTALAHPIGA- 130
Query: 113 VLGVPAKATIKEANSESFVVRTLDRKTLWEMQTPQVIKPDLLKKGFELVNREGLEVTDDV 172
+L P + T+K + +V T+DR LW TPQ+ + L++ ++ + +TD+
Sbjct: 131 ILASPVRDTMKRGDHLQQIVHTVDRTALWHALTPQMFRAQSLRERLFAALQQQVTITDEA 190
Query: 173 SIVEHLKHPVYITEGSYTNIKVTTPDDLLIAERILNLSSESS 214
S E + G N+K+T P+DL +AE L+ + E S
Sbjct: 191 SAFEWRGEKPALVAGRADNLKITQPEDLALAEFYLSRNKEKS 232
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Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
| ID | Name | Annotated EC number | Identity | Query coverage | Hit coverage | RBH(Q2H) | RBH(H2Q) |
| Q2RFM0 | ISPD_MOOTA | 2, ., 7, ., 7, ., 6, 0 | 0.3632 | 0.9532 | 0.8908 | yes | no |
| A7Z0L2 | ISPD_BACA2 | 2, ., 7, ., 7, ., 6, 0 | 0.4018 | 0.9766 | 0.9008 | yes | no |
| Q2LUS9 | ISPD_SYNAS | 2, ., 7, ., 7, ., 6, 0 | 0.3703 | 0.9485 | 0.8675 | yes | no |
| A7GJZ7 | ISPD_BACCN | 2, ., 7, ., 7, ., 6, 0 | 0.3791 | 0.9672 | 0.9159 | yes | no |
| Q67JP5 | ISPD_SYMTH | 2, ., 7, ., 7, ., 6, 0 | 0.3793 | 0.9112 | 0.8262 | yes | no |
| C3KVS6 | ISPD_CLOB6 | 2, ., 7, ., 7, ., 6, 0 | 0.3684 | 0.9672 | 0.9039 | yes | no |
| A8F958 | ISPD_BACP2 | 2, ., 7, ., 7, ., 6, 0 | 0.3649 | 0.9626 | 0.8995 | yes | no |
| B5YF77 | ISPD_DICT6 | 2, ., 7, ., 7, ., 6, 0 | 0.4 | 0.9018 | 0.8354 | yes | no |
| A9VN98 | ISPD_BACWK | 2, ., 7, ., 7, ., 6, 0 | 0.3971 | 0.9813 | 0.9292 | yes | no |
| A6LPN9 | ISPD_CLOB8 | 2, ., 7, ., 7, ., 6, 0 | 0.3961 | 0.9439 | 0.8938 | yes | no |
| Q73FC1 | ISPD_BACC1 | 2, ., 7, ., 7, ., 6, 0 | 0.3785 | 0.9813 | 0.9292 | yes | no |
| A5N4M5 | ISPD_CLOK5 | 2, ., 7, ., 7, ., 6, 0 | 0.3904 | 0.9345 | 0.8658 | yes | no |
| Q6HPT2 | ISPD_BACHK | 2, ., 7, ., 7, ., 6, 0 | 0.3785 | 0.9813 | 0.9292 | yes | no |
| Q3A8C6 | ISPD_PELCD | 2, ., 7, ., 7, ., 6, 0 | 0.3515 | 0.9719 | 0.8927 | yes | no |
| Q9PJT1 | ISPD_CHLMU | 2, ., 7, ., 7, ., 6, 0 | 0.3842 | 0.8925 | 0.8761 | yes | no |
| B2TIF4 | ISPD_CLOBB | 2, ., 7, ., 7, ., 6, 0 | 0.3831 | 0.9485 | 0.9062 | yes | no |
| B1KTA8 | ISPD_CLOBM | 2, ., 7, ., 7, ., 6, 0 | 0.3875 | 0.9672 | 0.9039 | yes | no |
| Q18CD1 | ISPD_CLOD6 | 2, ., 7, ., 7, ., 6, 0 | 0.3744 | 0.9719 | 0.8776 | yes | no |
| Q9KGF8 | ISPD_BACHD | 2, ., 7, ., 7, ., 6, 0 | 0.3732 | 0.9579 | 0.8991 | yes | no |
| Q824I4 | ISPD_CHLCV | 2, ., 7, ., 7, ., 6, 0 | 0.4057 | 0.9112 | 0.9198 | yes | no |
| A5D5L4 | ISPD_PELTS | 2, ., 7, ., 7, ., 6, 0 | 0.3904 | 0.9672 | 0.8697 | yes | no |
| P69834 | ISPD_ARATH | 2, ., 7, ., 7, ., 6, 0 | 0.8125 | 0.9719 | 0.6887 | yes | no |
| Q8R7S6 | ISPD_THETN | 2, ., 7, ., 7, ., 6, 0 | 0.4047 | 0.9672 | 0.9118 | yes | no |
| Q0TMM2 | ISPD_CLOP1 | 2, ., 7, ., 7, ., 6, 0 | 0.4190 | 0.9579 | 0.9111 | yes | no |
| Q5N8G1 | ISPD_ORYSJ | 2, ., 7, ., 7, ., 6, 0 | 0.7596 | 0.9719 | 0.7003 | yes | no |
| Q5L6V2 | ISPD_CHLAB | 2, ., 7, ., 7, ., 6, 0 | 0.4009 | 0.9112 | 0.8986 | yes | no |
| A7GJ99 | ISPD_CLOBL | 2, ., 7, ., 7, ., 6, 0 | 0.3827 | 0.9672 | 0.9039 | yes | no |
| Q9Z7X5 | ISPD_CHLPN | 2, ., 7, ., 7, ., 6, 0 | 0.3913 | 0.9112 | 0.9241 | yes | no |
| A8MLB1 | ISPD_ALKOO | 2, ., 7, ., 7, ., 6, 0 | 0.3703 | 0.9953 | 0.9025 | yes | no |
| Q63HB4 | ISPD_BACCZ | 2, ., 7, ., 7, ., 6, 0 | 0.3785 | 0.9813 | 0.9292 | yes | no |
| Q97EC9 | ISPD_CLOAB | 2, ., 7, ., 7, ., 6, 0 | 0.3738 | 0.9813 | 0.9170 | yes | no |
| A0R8F7 | ISPD_BACAH | 2, ., 7, ., 7, ., 6, 0 | 0.3785 | 0.9813 | 0.9292 | yes | no |
| C1FMX6 | ISPD_CLOBJ | 2, ., 7, ., 7, ., 6, 0 | 0.3779 | 0.9672 | 0.9039 | yes | no |
| Q6MEE8 | ISPD_PARUW | 2, ., 7, ., 7, ., 6, 0 | 0.4786 | 0.9532 | 0.8869 | yes | no |
| Q8XHQ3 | ISPD_CLOPE | 2, ., 7, ., 7, ., 6, 0 | 0.4190 | 0.9579 | 0.9111 | yes | no |
| Q5L433 | ISPD_GEOKA | 2, ., 7, ., 7, ., 6, 0 | 0.4162 | 0.9579 | 0.8991 | yes | no |
| Q81VV5 | ISPD_BACAN | 2, ., 7, ., 7, ., 6, 0 | 0.3785 | 0.9813 | 0.9292 | yes | no |
| Q0SQB9 | ISPD_CLOPS | 2, ., 7, ., 7, ., 6, 0 | 0.4190 | 0.9579 | 0.9111 | yes | no |
| Q253C1 | ISPD_CHLFF | 2, ., 7, ., 7, ., 6, 0 | 0.4057 | 0.9112 | 0.9198 | yes | no |
| A0PXS4 | ISPD_CLONN | 2, ., 7, ., 7, ., 6, 0 | 0.3857 | 0.9626 | 0.8917 | yes | no |
| A7FZ94 | ISPD_CLOB1 | 2, ., 7, ., 7, ., 6, 0 | 0.3779 | 0.9672 | 0.9039 | yes | no |
| Q06755 | ISPD_BACSU | 2, ., 7, ., 7, ., 6, 0 | 0.3551 | 0.9766 | 0.9008 | yes | no |
| A5I7N1 | ISPD_CLOBH | 2, ., 7, ., 7, ., 6, 0 | 0.3779 | 0.9672 | 0.9039 | yes | no |
| A4IJG4 | ISPD_GEOTN | 2, ., 7, ., 7, ., 6, 0 | 0.4066 | 0.9579 | 0.8991 | yes | no |
| A6TWL0 | ISPD_ALKMQ | 2, ., 7, ., 7, ., 6, 0 | 0.3644 | 0.9579 | 0.8506 | yes | no |
| B9DY87 | ISPD_CLOK1 | 2, ., 7, ., 7, ., 6, 0 | 0.3904 | 0.9345 | 0.8658 | yes | no |
| B1IGH9 | ISPD_CLOBK | 2, ., 7, ., 7, ., 6, 0 | 0.3684 | 0.9672 | 0.9039 | yes | no |
| Q81J63 | ISPD_BACCR | 2, ., 7, ., 7, ., 6, 0 | 0.3791 | 0.9672 | 0.9159 | yes | no |
| A4J0Y3 | ISPD_DESRM | 2, ., 7, ., 7, ., 6, 0 | 0.3952 | 0.9672 | 0.8846 | yes | no |
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
| Prediction Level | EC number | Confidence of Prediction |
| 3rd Layer | 2.7.7 | 0.963 |
| 4th Layer | 2.7.7.60 | 0.946 |
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
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 | CMS | SubName- Full=Putative chloroplast 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase; EC=2.7.7.60; Flags- Fragment; (230 aa) | |||||||||
(Populus trichocarpa) | |||||||||||
Predicted Functional Partners: | |||||||||||
 | gw1.I.9714.1 | hypothetical protein (334 aa) | • | • | • | • | • | 0.993 | |||
 | CMK | SubName- Full=Putative chloroplast 4-(Cytidine 5'-diphospho)-2-C-methyl-D-erythritol kinase; EC [...] (336 aa) | • | • | • | • | • | 0.993 | |||
 | estExt_Genewise1_v1.C_LG_XV1514 | 1-deoxy-D-xylulose-5-phosphate reductoisomerase (EC-1.1.1.267) (471 aa) | • | • | • | • | 0.991 | ||||
 | DXR | SubName- Full=Putative chloroplast 1-deoxy-D-xylulose 5-phosphate reductoisomerase; EC=1.1.1.26 [...] (471 aa) | • | • | • | • | 0.991 | ||||
 | gw1.I.8813.1 | 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase (EC-4.6.1.12) (187 aa) | • | • | • | • | • | 0.985 | |||
 | MCS | SubName- Full=Putative chloroplast 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase; EC=4. [...] (195 aa) | • | • | • | • | • | 0.984 | |||
 | eugene3.191750001 | Predicted protein (208 aa) | • | • | 0.860 | ||||||
 | HDS | SubName- Full=Putative chloroplast 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase; EC=1.1 [...] (742 aa) | • | • | • | 0.851 | |||||
 | eugene3.33610001 | Predicted protein (188 aa) | • | • | • | 0.809 | |||||
 | estExt_fgenesh4_pm.C_660111 | 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase (EC-1.17.7.1) (761 aa) | • | • | • | 0.804 | |||||
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 214 | |||
| PLN02728 | 252 | PLN02728, PLN02728, 2-C-methyl-D-erythritol 4-phos | 1e-150 | |
| cd02516 | 218 | cd02516, CDP-ME_synthetase, CDP-ME synthetase is i | 1e-79 | |
| PRK00155 | 227 | PRK00155, ispD, 2-C-methyl-D-erythritol 4-phosphat | 7e-78 | |
| COG1211 | 230 | COG1211, IspD, 4-diphosphocytidyl-2-methyl-D-erith | 1e-68 | |
| TIGR00453 | 217 | TIGR00453, ispD, 2-C-methyl-D-erythritol 4-phospha | 2e-68 | |
| pfam01128 | 221 | pfam01128, IspD, Uncharacterized protein family UP | 9e-49 | |
| PRK13385 | 230 | PRK13385, PRK13385, 2-C-methyl-D-erythritol 4-phos | 1e-37 | |
| PRK09382 | 378 | PRK09382, ispDF, bifunctional 2-C-methyl-D-erythri | 2e-30 |
| >gnl|CDD|215387 PLN02728, PLN02728, 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase | Back alignment and domain information |
|---|
Score = 416 bits (1071), Expect = e-150
Identities = 175/212 (82%), Positives = 192/212 (90%)
Query: 1 MGANMPKQYLPLLGQPIALYSFYTFSRMVEVKEIVVVCDPSYSDIFEETKEKINVDLKFS 60
MGANMPKQYLPLLGQPIALYS YTF+RM EVKEIVVVCDPSY D+FEE E I+V LKF+
Sbjct: 38 MGANMPKQYLPLLGQPIALYSLYTFARMPEVKEIVVVCDPSYRDVFEEAVENIDVPLKFA 97
Query: 61 LPGKERQDSVYSGLQEVDFNSELVCIHDSARPLVLSKDVQKVLMDALRVGAAVLGVPAKA 120
LPGKERQDSV++GLQEVD NSELVCIHDSARPLV S D++KVL DA GAAVLGVP KA
Sbjct: 98 LPGKERQDSVFNGLQEVDANSELVCIHDSARPLVTSADIEKVLKDAAVHGAAVLGVPVKA 157
Query: 121 TIKEANSESFVVRTLDRKTLWEMQTPQVIKPDLLKKGFELVNREGLEVTDDVSIVEHLKH 180
TIKEANS+SFVV+TLDRK LWEMQTPQVIKP+LL++GFELV REGLEVTDDVSIVE LKH
Sbjct: 158 TIKEANSDSFVVKTLDRKRLWEMQTPQVIKPELLRRGFELVEREGLEVTDDVSIVEALKH 217
Query: 181 PVYITEGSYTNIKVTTPDDLLIAERILNLSSE 212
PV+ITEGSYTNIKVTTPDD+L+AERILN S+
Sbjct: 218 PVFITEGSYTNIKVTTPDDMLVAERILNERSD 249
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Length = 252 |
| >gnl|CDD|133009 cd02516, CDP-ME_synthetase, CDP-ME synthetase is involved in mevalonate-independent isoprenoid production | Back alignment and domain information |
|---|
Score = 236 bits (605), Expect = 1e-79
Identities = 83/205 (40%), Positives = 119/205 (58%), Gaps = 2/205 (0%)
Query: 1 MGANMPKQYLPLLGQPIALYSFYTFSRMVEVKEIVVVCDPSYSDIFEE-TKEKINVDLKF 59
MGA++PKQ+L L G+P+ ++ F + EIVVV P D+ +E K ++ +K
Sbjct: 14 MGADIPKQFLELGGKPVLEHTLEAFLAHPAIDEIVVVVPPDDIDLAKELAKYGLSKVVKI 73
Query: 60 SLPGKERQDSVYSGLQEVDF-NSELVCIHDSARPLVLSKDVQKVLMDALRVGAAVLGVPA 118
G RQDSV +GL+ + + ++V IHD+ARP V + + +++ GAA+ VP
Sbjct: 74 VEGGATRQDSVLNGLKALPDADPDIVLIHDAARPFVSPELIDRLIDALKEYGAAIPAVPV 133
Query: 119 KATIKEANSESFVVRTLDRKTLWEMQTPQVIKPDLLKKGFELVNREGLEVTDDVSIVEHL 178
TIK + + VV TLDR+ LW QTPQ + DLL K + EG E TDD S+VE
Sbjct: 134 TDTIKRVDDDGVVVETLDREKLWAAQTPQAFRLDLLLKAHRQASEEGEEFTDDASLVEAA 193
Query: 179 KHPVYITEGSYTNIKVTTPDDLLIA 203
V + EGS NIK+TTP+DL +A
Sbjct: 194 GGKVALVEGSEDNIKITTPEDLALA 218
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4-diphosphocytidyl-2-methyl-D-erythritol synthase (CDP-ME), also called 2C-methyl-d-erythritol 4-phosphate cytidylyltransferase catalyzes the third step in the alternative (non-mevalonate) pathway of Isopentenyl diphosphate (IPP) biosynthesis: the formation of 4-diphosphocytidyl-2C-methyl-D-erythritol from CTP and 2C-methyl-D-erythritol 4-phosphate. This mevalonate independent pathway that utilizes pyruvate and glyceraldehydes 3-phosphate as starting materials for production of IPP occurs in a variety of bacteria, archaea and plant cells, but is absent in mammals. Thus, CDP-ME synthetase is an attractive targets for the structure-based design of selective antibacterial, herbicidal and antimalarial drugs. Length = 218 |
| >gnl|CDD|234670 PRK00155, ispD, 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase; Reviewed | Back alignment and domain information |
|---|
Score = 232 bits (595), Expect = 7e-78
Identities = 87/208 (41%), Positives = 119/208 (57%), Gaps = 1/208 (0%)
Query: 1 MGANMPKQYLPLLGQPIALYSFYTFSRMVEVKEIVVVCDPSYSDIFEETKEKINVDLKFS 60
MGA+ PKQYLPL G+PI ++ F + EI+VV P F E + +
Sbjct: 17 MGADRPKQYLPLGGKPILEHTLEAFLAHPRIDEIIVVVPPDDRPDFAELLLAKDPKVTVV 76
Query: 61 LPGKERQDSVYSGLQEVDFNSELVCIHDSARPLVLSKDVQKVLMDALRVGAAVLGVPAKA 120
G ERQDSV +GLQ + + + V +HD+ARP + D+ +++ A GAA+L VP K
Sbjct: 77 AGGAERQDSVLNGLQALP-DDDWVLVHDAARPFLTPDDIDRLIEAAEETGAAILAVPVKD 135
Query: 121 TIKEANSESFVVRTLDRKTLWEMQTPQVIKPDLLKKGFELVNREGLEVTDDVSIVEHLKH 180
TIK ++ +V T DR LW QTPQ + +LL++ EG +TDD S VE L
Sbjct: 136 TIKRSDDGGGIVDTPDRSGLWAAQTPQGFRIELLREALARALAEGKTITDDASAVERLGK 195
Query: 181 PVYITEGSYTNIKVTTPDDLLIAERILN 208
PV + EG Y NIK+TTP+DL +AE IL
Sbjct: 196 PVRLVEGRYDNIKITTPEDLALAEAILK 223
|
Length = 227 |
| >gnl|CDD|224132 COG1211, IspD, 4-diphosphocytidyl-2-methyl-D-erithritol synthase [Lipid metabolism] | Back alignment and domain information |
|---|
Score = 209 bits (534), Expect = 1e-68
Identities = 83/209 (39%), Positives = 124/209 (59%), Gaps = 2/209 (0%)
Query: 1 MGANMPKQYLPLLGQPIALYSFYTFSRMVEVKEIVVVCDPSYSDIFEE-TKEKINVDLKF 59
MG +PKQYL L G+P+ ++ F + EIVVV P FE+ K + ++
Sbjct: 18 MGNPVPKQYLELGGRPLLEHTLEAFLESPAIDEIVVVVSPEDDPYFEKLPKLSADKRVEV 77
Query: 60 SLPGKERQDSVYSGLQEVD-FNSELVCIHDSARPLVLSKDVQKVLMDALRVGAAVLGVPA 118
G RQ+SVY+GLQ + ++S+ V +HD+ARP + K +++++ A + GAA+L +P
Sbjct: 78 VKGGATRQESVYNGLQALSKYDSDWVLVHDAARPFLTPKLIKRLIELADKYGAAILALPV 137
Query: 119 KATIKEANSESFVVRTLDRKTLWEMQTPQVIKPDLLKKGFELVNREGLEVTDDVSIVEHL 178
T+K +++ +V T+DR LW QTPQ + +LLK+ EG E+TDD S +E
Sbjct: 138 TDTLKRVDADGNIVETVDRSGLWAAQTPQAFRLELLKQALARAFAEGREITDDASAIEKA 197
Query: 179 KHPVYITEGSYTNIKVTTPDDLLIAERIL 207
PV + EGS N K+TTP+DL IAE IL
Sbjct: 198 GGPVSLVEGSADNFKITTPEDLEIAEAIL 226
|
Length = 230 |
| >gnl|CDD|213532 TIGR00453, ispD, 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase | Back alignment and domain information |
|---|
Score = 208 bits (531), Expect = 2e-68
Identities = 81/207 (39%), Positives = 120/207 (57%), Gaps = 2/207 (0%)
Query: 1 MGANMPKQYLPLLGQPIALYSFYTFSRMVEVKEIVVVCDPSYSDIFEETKEKINVDLKFS 60
G+ +PKQYL L G+P+ ++ F + E+VVV P ++ F++ V K
Sbjct: 13 FGSGVPKQYLELGGRPLLEHALDAFLAHPAIDEVVVVVSPDDTEFFQKYLVARAV-PKIV 71
Query: 61 LPGKERQDSVYSGLQEVDFNSELVCIHDSARPLVLSKDVQKVLMDALRVGAAVLGVPAKA 120
G RQDSV +GL+ + ++E V +HD+ARP V + + ++L + GAA+L +P
Sbjct: 72 AGGDTRQDSVRNGLKALK-DAEFVLVHDAARPFVPKELLDRLLEALRKAGAAILALPVAD 130
Query: 121 TIKEANSESFVVRTLDRKTLWEMQTPQVIKPDLLKKGFELVNREGLEVTDDVSIVEHLKH 180
T+K ++ FVV T+DR+ LW QTPQ + +LLKK EG E+TDD S VE L
Sbjct: 131 TLKRVEADGFVVETVDREGLWAAQTPQAFRTELLKKALARAKLEGFEITDDASAVEKLGG 190
Query: 181 PVYITEGSYTNIKVTTPDDLLIAERIL 207
V + EG N K+TTP+DL +AE +L
Sbjct: 191 KVQLVEGDALNFKITTPEDLALAEALL 217
|
Members of this protein family are 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase, the IspD protein of the deoxyxylulose pathway of IPP biosynthesis. In about twenty percent of bacterial genomes, this protein occurs as IspDF, a bifunctional fusion protein [Biosynthesis of cofactors, prosthetic groups, and carriers, Other]. Length = 217 |
| >gnl|CDD|216314 pfam01128, IspD, Uncharacterized protein family UPF0007 | Back alignment and domain information |
|---|
Score = 158 bits (401), Expect = 9e-49
Identities = 77/208 (37%), Positives = 111/208 (53%), Gaps = 3/208 (1%)
Query: 1 MGANMPKQYLPLLGQPIALYSFYTFSRMVEVKEIVVVCDPSYSDIFEETKEKINVDLKFS 60
MGA +PKQ+L LLGQP+ ++ F V IVV P + F + ++ L
Sbjct: 14 MGAGVPKQFLQLLGQPLLEHTVDAFLASPVVDRIVVAVSPDDTPEFRQLLGDPSIQLVAG 73
Query: 61 LPGKERQDSVYSGLQEVDFNSELVCIHDSARPLVLSKDVQKVLMDALRV-GAAVLGVPAK 119
G RQDSV +GL+ + ++ V +HD ARP + D+ ++L A+L +P
Sbjct: 74 --GDTRQDSVLNGLKALAGTAKFVLVHDGARPCLPHADLARLLAALETGTQGAILALPVT 131
Query: 120 ATIKEANSESFVVRTLDRKTLWEMQTPQVIKPDLLKKGFELVNREGLEVTDDVSIVEHLK 179
TIK ++ V T DR LW QTPQ + DLL + ++ G E+TDD S+VEH
Sbjct: 132 DTIKRVEADGVVAGTPDRSGLWAAQTPQGFRVDLLLAAHQRGDQPGAEITDDASLVEHAG 191
Query: 180 HPVYITEGSYTNIKVTTPDDLLIAERIL 207
V + G N+K+TTP+DL +AE IL
Sbjct: 192 GSVQVVPGRPDNLKITTPEDLALAEAIL 219
|
Length = 221 |
| >gnl|CDD|184017 PRK13385, PRK13385, 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase; Provisional | Back alignment and domain information |
|---|
Score = 130 bits (328), Expect = 1e-37
Identities = 69/210 (32%), Positives = 118/210 (56%), Gaps = 5/210 (2%)
Query: 1 MGANMPKQYLPLLGQPIALYSFYTFSRMVEVKEIVVVCDPSYSDIFEETKEKINVD---L 57
M A + K +L L+G+PI +++ F +I++V ++ +++NV +
Sbjct: 16 MNAPLNKMWLDLVGEPIFIHALRPFLADNRCSKIIIVTQAQERKHVQDLMKQLNVADQRV 75
Query: 58 KFSLPGKERQDSVYSGLQEVDFNSELVCIHDSARPLVLSKDVQKVLMDALRVGAAVLGVP 117
+ G ERQ+SV +GL + N +++ +HD ARP + + ++L + GAA+ V
Sbjct: 76 EVVKGGTERQESVAAGLDRIG-NEDVILVHDGARPFLTQDIIDRLLEGVAKYGAAICAVE 134
Query: 118 AKATIKEANSESFVVRTLDRKTLWEMQTPQVIKPDLLKKGFELVNREGLEVTDDVSIVEH 177
K T+K + V+ T+DR LW+ QTPQ + +L+K L + + TD+ S+VE
Sbjct: 135 VKDTVKRV-KDKQVIETVDRNELWQGQTPQAFELKILQKAHRLASEQQFLGTDEASLVER 193
Query: 178 LKHPVYITEGSYTNIKVTTPDDLLIAERIL 207
HPV + +GSY NIK+TTP+D+ +A+ IL
Sbjct: 194 SPHPVKLVQGSYYNIKLTTPEDMPLAKAIL 223
|
Length = 230 |
| >gnl|CDD|236492 PRK09382, ispDF, bifunctional 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase/2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase protein; Provisional | Back alignment and domain information |
|---|
Score = 114 bits (289), Expect = 2e-30
Identities = 70/210 (33%), Positives = 104/210 (49%), Gaps = 19/210 (9%)
Query: 2 GANMPKQYLPLLGQPIALYSFYTFSRMVEVKEIVVVCDPSYSDIFEETKEKINVDLKFSL 61
A + KQ+L + G+P+ L+ S KEIVVV P ++ +I +
Sbjct: 20 SAEVKKQWLRIGGKPLWLHVLENLSSAPAFKEIVVVIHPDDIAYMKKALPEI-KFVTLVT 78
Query: 62 PGKERQDSVYSGLQEVDFNSELVCIHDSARPLVLSKDVQKVLMDALRVGAAVLGVPAKA- 120
G RQ+SV + L+ +D SE V IHD+ARP V K++ L++AL V +PA
Sbjct: 79 GGATRQESVRNALEALD--SEYVLIHDAARPFV-PKELIDRLIEALDKADCV--LPALPV 133
Query: 121 --TIKEANSESFVVRTLDRKTLWEMQTPQVIKPDLLKKGFELVNREGLEVTDDVSIVEHL 178
T+K AN T+DR+ L +QTPQ+ + LK R + TDD S E
Sbjct: 134 ADTLKRANE------TVDREGLKLIQTPQLSRTKTLKAA--ADGRG--DFTDDSSAAEAA 183
Query: 179 KHPVYITEGSYTNIKVTTPDDLLIAERILN 208
V + EGS K+T +DL +A+ +L+
Sbjct: 184 GGKVALVEGSEDLHKLTYKEDLKMADLLLS 213
|
Length = 378 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 214 | |||
| PF01128 | 221 | IspD: 2-C-methyl-D-erythritol 4-phosphate cytidyly | 100.0 | |
| COG1211 | 230 | IspD 4-diphosphocytidyl-2-methyl-D-erithritol synt | 100.0 | |
| PLN02728 | 252 | 2-C-methyl-D-erythritol 4-phosphate cytidylyltrans | 100.0 | |
| PRK13385 | 230 | 2-C-methyl-D-erythritol 4-phosphate cytidylyltrans | 100.0 | |
| PRK00155 | 227 | ispD 2-C-methyl-D-erythritol 4-phosphate cytidylyl | 100.0 | |
| TIGR00453 | 217 | ispD 2-C-methyl-D-erythritol 4-phosphate cytidylyl | 100.0 | |
| PRK09382 | 378 | ispDF bifunctional 2-C-methyl-D-erythritol 4-phosp | 100.0 | |
| cd02516 | 218 | CDP-ME_synthetase CDP-ME synthetase is involved in | 100.0 | |
| TIGR00466 | 238 | kdsB 3-deoxy-D-manno-octulosonate cytidylyltransfe | 99.94 | |
| COG1212 | 247 | KdsB CMP-2-keto-3-deoxyoctulosonic acid synthetase | 99.94 | |
| COG1083 | 228 | NeuA CMP-N-acetylneuraminic acid synthetase [Cell | 99.93 | |
| COG1207 | 460 | GlmU N-acetylglucosamine-1-phosphate uridyltransfe | 99.93 | |
| TIGR03584 | 222 | PseF pseudaminic acid CMP-transferase. The sequenc | 99.92 | |
| cd02513 | 223 | CMP-NeuAc_Synthase CMP-NeuAc_Synthase activates N- | 99.9 | |
| PLN02917 | 293 | CMP-KDO synthetase | 99.89 | |
| COG2068 | 199 | Uncharacterized MobA-related protein [General func | 99.88 | |
| cd02517 | 239 | CMP-KDO-Synthetase CMP-KDO synthetase catalyzes th | 99.87 | |
| PRK13368 | 238 | 3-deoxy-manno-octulosonate cytidylyltransferase; P | 99.86 | |
| cd02540 | 229 | GT2_GlmU_N_bac N-terminal domain of bacterial GlmU | 99.86 | |
| PRK14356 | 456 | glmU bifunctional N-acetylglucosamine-1-phosphate | 99.83 | |
| PRK05450 | 245 | 3-deoxy-manno-octulosonate cytidylyltransferase; P | 99.83 | |
| PRK14354 | 458 | glmU bifunctional N-acetylglucosamine-1-phosphate | 99.82 | |
| PRK14353 | 446 | glmU bifunctional N-acetylglucosamine-1-phosphate | 99.82 | |
| TIGR01173 | 451 | glmU UDP-N-acetylglucosamine diphosphorylase/gluco | 99.8 | |
| cd04182 | 186 | GT_2_like_f GT_2_like_f is a subfamily of the glyc | 99.8 | |
| PRK14359 | 430 | glmU bifunctional N-acetylglucosamine-1-phosphate | 99.8 | |
| PRK14360 | 450 | glmU bifunctional N-acetylglucosamine-1-phosphate | 99.79 | |
| cd02518 | 233 | GT2_SpsF SpsF is a glycosyltrnasferase implicated | 99.79 | |
| TIGR03202 | 190 | pucB xanthine dehydrogenase accessory protein pucB | 99.78 | |
| PRK00317 | 193 | mobA molybdopterin-guanine dinucleotide biosynthes | 99.78 | |
| PRK14352 | 482 | glmU bifunctional N-acetylglucosamine-1-phosphate | 99.78 | |
| TIGR03310 | 188 | matur_ygfJ molybdenum hydroxylase accessory protei | 99.78 | |
| cd02503 | 181 | MobA MobA catalyzes the formation of molybdopterin | 99.77 | |
| TIGR02665 | 186 | molyb_mobA molybdopterin-guanine dinucleotide bios | 99.77 | |
| PRK02726 | 200 | molybdopterin-guanine dinucleotide biosynthesis pr | 99.75 | |
| PRK14355 | 459 | glmU bifunctional N-acetylglucosamine-1-phosphate | 99.75 | |
| COG1861 | 241 | SpsF Spore coat polysaccharide biosynthesis protei | 99.7 | |
| PRK14489 | 366 | putative bifunctional molybdopterin-guanine dinucl | 99.7 | |
| PRK14358 | 481 | glmU bifunctional N-acetylglucosamine-1-phosphate | 99.68 | |
| cd06915 | 223 | NTP_transferase_WcbM_like WcbM_like is a subfamily | 99.67 | |
| TIGR01208 | 353 | rmlA_long glucose-1-phosphate thymidylylransferase | 99.66 | |
| COG1209 | 286 | RfbA dTDP-glucose pyrophosphorylase [Cell envelope | 99.66 | |
| cd02538 | 240 | G1P_TT_short G1P_TT_short is the short form of glu | 99.65 | |
| PRK14357 | 448 | glmU bifunctional N-acetylglucosamine-1-phosphate | 99.65 | |
| PRK14490 | 369 | putative bifunctional molybdopterin-guanine dinucl | 99.65 | |
| PRK00576 | 178 | molybdopterin-guanine dinucleotide biosynthesis pr | 99.64 | |
| PRK00560 | 196 | molybdopterin-guanine dinucleotide biosynthesis pr | 99.64 | |
| PRK09451 | 456 | glmU bifunctional N-acetylglucosamine-1-phosphate | 99.63 | |
| cd04189 | 236 | G1P_TT_long G1P_TT_long represents the long form o | 99.62 | |
| PF02348 | 217 | CTP_transf_3: Cytidylyltransferase; InterPro: IPR0 | 99.62 | |
| COG0746 | 192 | MobA Molybdopterin-guanine dinucleotide biosynthes | 99.62 | |
| PF12804 | 160 | NTP_transf_3: MobA-like NTP transferase domain; PD | 99.61 | |
| TIGR01207 | 286 | rmlA glucose-1-phosphate thymidylyltransferase, sh | 99.61 | |
| COG2266 | 177 | GTP:adenosylcobinamide-phosphate guanylyltransfera | 99.61 | |
| PRK15480 | 292 | glucose-1-phosphate thymidylyltransferase RfbA; Pr | 99.6 | |
| cd02524 | 253 | G1P_cytidylyltransferase G1P_cytidylyltransferase | 99.58 | |
| cd06422 | 221 | NTP_transferase_like_1 NTP_transferase_like_1 is a | 99.56 | |
| TIGR00454 | 183 | conserved hypothetical protein TIGR00454. At this | 99.54 | |
| TIGR02623 | 254 | G1P_cyt_trans glucose-1-phosphate cytidylyltransfe | 99.54 | |
| PF00483 | 248 | NTP_transferase: Nucleotidyl transferase This Pros | 99.52 | |
| cd02523 | 229 | PC_cytidylyltransferase Phosphocholine cytidylyltr | 99.51 | |
| cd02541 | 267 | UGPase_prokaryotic Prokaryotic UGPase catalyses th | 99.51 | |
| PRK14500 | 346 | putative bifunctional molybdopterin-guanine dinucl | 99.51 | |
| TIGR01105 | 297 | galF UTP-glucose-1-phosphate uridylyltransferase, | 99.51 | |
| TIGR03552 | 195 | F420_cofC 2-phospho-L-lactate guanylyltransferase | 99.51 | |
| COG1213 | 239 | Predicted sugar nucleotidyltransferases [Cell enve | 99.5 | |
| COG1208 | 358 | GCD1 Nucleoside-diphosphate-sugar pyrophosphorylas | 99.49 | |
| PRK13389 | 302 | UTP--glucose-1-phosphate uridylyltransferase subun | 99.48 | |
| cd06426 | 220 | NTP_transferase_like_2 NTP_trnasferase_like_2 is a | 99.48 | |
| TIGR01099 | 260 | galU UTP-glucose-1-phosphate uridylyltransferase. | 99.48 | |
| cd06428 | 257 | M1P_guanylylT_A_like_N N-terminal domain of M1P_gu | 99.45 | |
| cd04183 | 231 | GT2_BcE_like GT2_BcbE_like is likely involved in t | 99.44 | |
| PRK05293 | 380 | glgC glucose-1-phosphate adenylyltransferase; Prov | 99.44 | |
| cd06425 | 233 | M1P_guanylylT_B_like_N N-terminal domain of the M1 | 99.43 | |
| PRK10122 | 297 | GalU regulator GalF; Provisional | 99.41 | |
| TIGR02092 | 369 | glgD glucose-1-phosphate adenylyltransferase, GlgD | 99.4 | |
| PRK00844 | 407 | glgC glucose-1-phosphate adenylyltransferase; Prov | 99.4 | |
| cd02508 | 200 | ADP_Glucose_PP ADP-glucose pyrophosphorylase is in | 99.35 | |
| cd04181 | 217 | NTP_transferase NTP_transferases catalyze the tran | 99.32 | |
| TIGR02091 | 361 | glgC glucose-1-phosphate adenylyltransferase. This | 99.31 | |
| PRK02862 | 429 | glgC glucose-1-phosphate adenylyltransferase; Prov | 99.3 | |
| PRK00725 | 425 | glgC glucose-1-phosphate adenylyltransferase; Prov | 99.29 | |
| PLN02241 | 436 | glucose-1-phosphate adenylyltransferase | 99.29 | |
| KOG1322 | 371 | consensus GDP-mannose pyrophosphorylase/mannose-1- | 99.18 | |
| cd04198 | 214 | eIF-2B_gamma_N The N-terminal domain of gamma subu | 99.1 | |
| cd02509 | 274 | GDP-M1P_Guanylyltransferase GDP-M1P_Guanylyltransf | 99.09 | |
| TIGR01479 | 468 | GMP_PMI mannose-1-phosphate guanylyltransferase/ma | 98.97 | |
| cd04197 | 217 | eIF-2B_epsilon_N The N-terminal domain of epsilon | 98.79 | |
| COG1920 | 210 | Predicted nucleotidyltransferase, CobY/MobA/RfbA f | 98.72 | |
| cd02507 | 216 | eIF-2B_gamma_N_like The N-terminal of eIF-2B_gamma | 98.68 | |
| PF01983 | 217 | CofC: Guanylyl transferase CofC like; InterPro: IP | 98.67 | |
| COG1210 | 291 | GalU UDP-glucose pyrophosphorylase [Cell envelope | 98.58 | |
| COG4750 | 231 | LicC CTP:phosphocholine cytidylyltransferase invol | 98.4 | |
| KOG1462 | 433 | consensus Translation initiation factor 2B, gamma | 98.27 | |
| COG0836 | 333 | {ManC} Mannose-1-phosphate guanylyltransferase [Ce | 98.17 | |
| KOG1460 | 407 | consensus GDP-mannose pyrophosphorylase [Carbohydr | 98.13 | |
| PRK15460 | 478 | cpsB mannose-1-phosphate guanyltransferase; Provis | 98.06 | |
| COG0448 | 393 | GlgC ADP-glucose pyrophosphorylase [Carbohydrate t | 97.36 | |
| cd02511 | 229 | Beta4Glucosyltransferase UDP-glucose LOS-beta-1,4 | 96.67 | |
| KOG1461 | 673 | consensus Translation initiation factor 2B, epsilo | 96.62 | |
| PF09837 | 122 | DUF2064: Uncharacterized protein conserved in bact | 96.58 | |
| cd06438 | 183 | EpsO_like EpsO protein participates in the methano | 96.39 | |
| cd06439 | 251 | CESA_like_1 CESA_like_1 is a member of the cellulo | 96.11 | |
| cd04180 | 266 | UGPase_euk_like Eukaryotic UGPase-like includes UD | 96.01 | |
| cd06421 | 234 | CESA_CelA_like CESA_CelA_like are involved in the | 96.01 | |
| cd00761 | 156 | Glyco_tranf_GTA_type Glycosyltransferase family A | 95.94 | |
| cd04195 | 201 | GT2_AmsE_like GT2_AmsE_like is involved in exopoly | 95.93 | |
| cd06434 | 235 | GT2_HAS Hyaluronan synthases catalyze polymerizati | 95.87 | |
| PF00535 | 169 | Glycos_transf_2: Glycosyl transferase family 2; In | 95.73 | |
| cd06435 | 236 | CESA_NdvC_like NdvC_like proteins in this family a | 95.47 | |
| cd04192 | 229 | GT_2_like_e Subfamily of Glycosyltransferase Famil | 95.3 | |
| PRK13915 | 306 | putative glucosyl-3-phosphoglycerate synthase; Pro | 95.22 | |
| cd04179 | 185 | DPM_DPG-synthase_like DPM_DPG-synthase_like is a m | 95.04 | |
| cd06427 | 241 | CESA_like_2 CESA_like_2 is a member of the cellulo | 94.95 | |
| cd04186 | 166 | GT_2_like_c Subfamily of Glycosyltransferase Famil | 94.73 | |
| cd04184 | 202 | GT2_RfbC_Mx_like Myxococcus xanthus RfbC like prot | 94.63 | |
| cd06423 | 180 | CESA_like CESA_like is the cellulose synthase supe | 94.6 | |
| PRK10073 | 328 | putative glycosyl transferase; Provisional | 94.44 | |
| PRK11204 | 420 | N-glycosyltransferase; Provisional | 94.41 | |
| PRK11498 | 852 | bcsA cellulose synthase catalytic subunit; Provisi | 94.31 | |
| cd06442 | 224 | DPM1_like DPM1_like represents putative enzymes si | 94.29 | |
| TIGR03469 | 384 | HonB hopene-associated glycosyltransferase HpnB. T | 94.27 | |
| cd06436 | 191 | GlcNAc-1-P_transferase N-acetyl-glucosamine transf | 94.15 | |
| PRK10714 | 325 | undecaprenyl phosphate 4-deoxy-4-formamido-L-arabi | 94.05 | |
| TIGR03111 | 439 | glyc2_xrt_Gpos1 putative glycosyltransferase TIGR0 | 94.03 | |
| COG1215 | 439 | Glycosyltransferases, probably involved in cell wa | 93.99 | |
| cd02525 | 249 | Succinoglycan_BP_ExoA ExoA is involved in the bios | 93.97 | |
| cd04187 | 181 | DPM1_like_bac Bacterial DPM1_like enzymes are rela | 93.69 | |
| cd02522 | 221 | GT_2_like_a GT_2_like_a represents a glycosyltrans | 93.61 | |
| cd06433 | 202 | GT_2_WfgS_like WfgS and WfeV are involved in O-ant | 93.54 | |
| cd04185 | 202 | GT_2_like_b Subfamily of Glycosyltransferase Famil | 93.51 | |
| PF10111 | 281 | Glyco_tranf_2_2: Glycosyltransferase like family 2 | 93.5 | |
| cd06913 | 219 | beta3GnTL1_like Beta 1, 3-N-acetylglucosaminyltran | 93.26 | |
| COG3222 | 211 | Uncharacterized protein conserved in bacteria [Fun | 93.25 | |
| PLN02726 | 243 | dolichyl-phosphate beta-D-mannosyltransferase | 93.19 | |
| cd04188 | 211 | DPG_synthase DPG_synthase is involved in protein N | 93.11 | |
| cd02510 | 299 | pp-GalNAc-T pp-GalNAc-T initiates the formation of | 93.06 | |
| TIGR03030 | 713 | CelA cellulose synthase catalytic subunit (UDP-for | 92.99 | |
| PRK14583 | 444 | hmsR N-glycosyltransferase; Provisional | 92.81 | |
| TIGR03472 | 373 | HpnI hopanoid biosynthesis associated glycosyl tra | 92.77 | |
| cd04196 | 214 | GT_2_like_d Subfamily of Glycosyltransferase Famil | 92.62 | |
| KOG2978 | 238 | consensus Dolichol-phosphate mannosyltransferase [ | 92.53 | |
| cd02526 | 237 | GT2_RfbF_like RfbF is a putative dTDP-rhamnosyl tr | 92.49 | |
| COG1216 | 305 | Predicted glycosyltransferases [General function p | 92.09 | |
| PTZ00339 | 482 | UDP-N-acetylglucosamine pyrophosphorylase; Provisi | 91.43 | |
| cd06437 | 232 | CESA_CaSu_A2 Cellulose synthase catalytic subunit | 91.41 | |
| cd06420 | 182 | GT2_Chondriotin_Pol_N N-terminal domain of Chondro | 91.41 | |
| cd04193 | 323 | UDPGlcNAc_PPase UDPGlcNAc pyrophosphorylase catala | 91.19 | |
| cd02520 | 196 | Glucosylceramide_synthase Glucosylceramide synthas | 90.94 | |
| PRK05454 | 691 | glucosyltransferase MdoH; Provisional | 90.42 | |
| PTZ00260 | 333 | dolichyl-phosphate beta-glucosyltransferase; Provi | 90.32 | |
| PF13704 | 97 | Glyco_tranf_2_4: Glycosyl transferase family 2 | 89.83 | |
| TIGR01556 | 281 | rhamnosyltran L-rhamnosyltransferase. Rhamnolipids | 89.7 | |
| PF13641 | 228 | Glyco_tranf_2_3: Glycosyltransferase like family 2 | 88.7 | |
| PRK10018 | 279 | putative glycosyl transferase; Provisional | 86.37 | |
| cd02514 | 334 | GT13_GLCNAC-TI GT13_GLCNAC-TI is involved in an es | 86.2 | |
| cd04191 | 254 | Glucan_BSP_ModH Glucan_BSP_ModH catalyzes the elon | 82.7 |
| >PF01128 IspD: 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase; InterPro: IPR001228 4-diphosphocytidyl-2C-methyl-D-erythritol synthase, a bacterial ispD protein, catalyzes the third step of the deoxyxylulose-5-phosphate pathway (DXP) of isoprenoid biosynthesis; the formation of 4-diphosphocytidyl-2C-methyl-D-erythritol from CTP and 2C-methyl-D-erythritol 4-phosphate [] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-47 Score=296.74 Aligned_cols=207 Identities=43% Similarity=0.662 Sum_probs=180.5
Q ss_pred CCCCCCceeeeeCCeehHHHHHHHHhcCCCcCeEEEEeCCCchHHHHHHHHhcCCcEEEecCCccHHHHHHHHHhhcccC
Q 028081 1 MGANMPKQYLPLLGQPIALYSFYTFSRMVEVKEIVVVCDPSYSDIFEETKEKINVDLKFSLPGKERQDSVYSGLQEVDFN 80 (214)
Q Consensus 1 m~~~~~K~l~~l~gkpli~~~i~~~~~~~~~~~iiVv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sv~~al~~~~~~ 80 (214)
||++.||||++++|||+|.|+++++.+++.+++|+||+++++++.+++++.. .++.++.||.+|++|+++||..++..
T Consensus 14 ~g~~~pKQf~~l~Gkpvl~~tl~~f~~~~~i~~Ivvv~~~~~~~~~~~~~~~--~~v~iv~GG~tR~~SV~ngL~~l~~~ 91 (221)
T PF01128_consen 14 MGSGIPKQFLELGGKPVLEYTLEAFLASPEIDEIVVVVPPEDIDYVEELLSK--KKVKIVEGGATRQESVYNGLKALAED 91 (221)
T ss_dssp CTSSS-GGGSEETTEEHHHHHHHHHHTTTTESEEEEEESGGGHHHHHHHHHH--TTEEEEE--SSHHHHHHHHHHCHHCT
T ss_pred cCcCCCCeeeEECCeEeHHHHHHHHhcCCCCCeEEEEecchhHHHHHHhhcC--CCEEEecCChhHHHHHHHHHHHHHcC
Confidence 8899999999999999999999999999999999999999988888887776 56788999999999999999999765
Q ss_pred CCeEEEEcCCCCCCCHHHHHHHHHHHHh-cCCeEEeeeccccEEEecCCCceeeecCccchhhhcCCcccChHHHHHHHH
Q 028081 81 SELVCIHDSARPLVLSKDVQKVLMDALR-VGAAVLGVPAKATIKEANSESFVVRTLDRKTLWEMQTPQVIKPDLLKKGFE 159 (214)
Q Consensus 81 ~~~vl~~~~d~P~v~~~~i~~~i~~~~~-~~~~i~~~~~~~~~~~~~~~g~v~~~~~r~~~~~~~~p~~f~~~~l~~~~~ 159 (214)
+|+|++|||.|||++++.|+++++.... +++++++.|+.|++++++++|.+.++++|+++|.+||||+|+.+.|.++|+
T Consensus 92 ~d~VlIHDaaRPfv~~~~i~~~i~~~~~~~~aai~~~p~~DTik~v~~~~~v~~tldR~~l~~~QTPQ~F~~~~l~~a~~ 171 (221)
T PF01128_consen 92 CDIVLIHDAARPFVSPELIDRVIEAAREGHGAAIPALPVTDTIKRVDDDGFVTETLDRSKLWAVQTPQAFRFELLLEAYE 171 (221)
T ss_dssp SSEEEEEETTSTT--HHHHHHHHHHHHHTCSEEEEEEE-SSEEEEESTTSBEEEEETGGGEEEEEEEEEEEHHHHHHHHH
T ss_pred CCEEEEEccccCCCCHHHHHHHHHHHHhhcCcEEEEEeccccEEEEecCCcccccCCHHHeeeecCCCeecHHHHHHHHH
Confidence 6899999999999999999999999987 889999999999999998778899999999999999999999999999998
Q ss_pred HHHhcCCCCCcHHHHHHhCCCCeEEEecCCCCcccCCHHHHHHHHHHhhc
Q 028081 160 LVNREGLEVTDDVSIVEHLKHPVYITEGSYTNIKVTTPDDLLIAERILNL 209 (214)
Q Consensus 160 ~~~~~~~~~~d~~~~~~~~g~~i~~v~~~~~~~~Idtp~Dl~~a~~~~~~ 209 (214)
.....+..+||++++++..|.++.+|+++..|+|||||+||.+||.++++
T Consensus 172 ~a~~~~~~~tDdasl~~~~g~~v~~V~G~~~N~KIT~peDl~~ae~ll~~ 221 (221)
T PF01128_consen 172 KADEEGFEFTDDASLVEAAGKKVAIVEGSPRNIKITTPEDLELAEALLKQ 221 (221)
T ss_dssp THHHHTHHHSSHHHHHHHTTS-EEEEE--TTG----SHHHHHHHHHHHHH
T ss_pred HHHhcCCCccCHHHHHHHcCCCEEEEeCCCCceeECCHHHHHHHHHHhcC
Confidence 87666677899999999999999999999999999999999999999874
|
The isoprenoid pathway is a well known target for anti-infective drug development [, ].; GO: 0003824 catalytic activity, 0008299 isoprenoid biosynthetic process; PDB: 1VGW_F 1VGZ_A 1W77_A 2YC3_A 2YCM_A 2YC5_A 1VGU_A 3N9W_B 1I52_A 1H3M_B .... |
| >COG1211 IspD 4-diphosphocytidyl-2-methyl-D-erithritol synthase [Lipid metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.2e-44 Score=275.15 Aligned_cols=209 Identities=39% Similarity=0.612 Sum_probs=191.1
Q ss_pred CCCCCCceeeeeCCeehHHHHHHHHhcCCCcCeEEEEeCCCchHHHHHHHH-hcCCcEEEecCCccHHHHHHHHHhhccc
Q 028081 1 MGANMPKQYLPLLGQPIALYSFYTFSRMVEVKEIVVVCDPSYSDIFEETKE-KINVDLKFSLPGKERQDSVYSGLQEVDF 79 (214)
Q Consensus 1 m~~~~~K~l~~l~gkpli~~~i~~~~~~~~~~~iiVv~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~sv~~al~~~~~ 79 (214)
||++.|||+++++|+|||+|+++.++.++.+++|+|+++.++...+.+... ..+..+..+.||.+|++|+++||++++.
T Consensus 18 ~~~~~pKq~l~l~g~pll~~tl~~f~~~~~i~~Ivvv~~~~~~~~~~~~~~~~~~~~v~~v~GG~~R~~SV~~gL~~~~~ 97 (230)
T COG1211 18 MGNPVPKQYLELGGRPLLEHTLEAFLESPAIDEIVVVVSPEDDPYFEKLPKLSADKRVEVVKGGATRQESVYNGLQALSK 97 (230)
T ss_pred cCCCCCceEEEECCEEehHHHHHHHHhCcCCCeEEEEEChhhhHHHHHhhhhccCCeEEEecCCccHHHHHHHHHHHhhc
Confidence 788999999999999999999999999999999999999877677776663 3345688999999999999999999974
Q ss_pred -CCCeEEEEcCCCCCCCHHHHHHHHHHHHhcCCeEEeeeccccEEEecCCCceeeecCccchhhhcCCcccChHHHHHHH
Q 028081 80 -NSELVCIHDSARPLVLSKDVQKVLMDALRVGAAVLGVPAKATIKEANSESFVVRTLDRKTLWEMQTPQVIKPDLLKKGF 158 (214)
Q Consensus 80 -~~~~vl~~~~d~P~v~~~~i~~~i~~~~~~~~~i~~~~~~~~~~~~~~~g~v~~~~~r~~~~~~~~p~~f~~~~l~~~~ 158 (214)
+.++||+||+.|||+++++|+++++....+++++++.|+.|++++.+++|.+..+++|+++|..||||+|+.+.|.+++
T Consensus 98 ~~~~~VlvHDaaRPf~~~~~i~~li~~~~~~~aai~alpv~DTik~~~~~~~i~~t~~R~~l~~~QTPQ~F~~~~L~~a~ 177 (230)
T COG1211 98 YDSDWVLVHDAARPFLTPKLIKRLIELADKYGAAILALPVTDTLKRVDADGNIVETVDRSGLWAAQTPQAFRLELLKQAL 177 (230)
T ss_pred cCCCEEEEeccccCCCCHHHHHHHHHhhccCCcEEEEeeccCcEEEecCCCCeeeccChhhhhhhhCCccccHHHHHHHH
Confidence 4689999999999999999999997666688999999999999998777888999999999999999999999999999
Q ss_pred HHHHhcCCCCCcHHHHHHhCCCCeEEEecCCCCcccCCHHHHHHHHHHhhc
Q 028081 159 ELVNREGLEVTDDVSIVEHLKHPVYITEGSYTNIKVTTPDDLLIAERILNL 209 (214)
Q Consensus 159 ~~~~~~~~~~~d~~~~~~~~g~~i~~v~~~~~~~~Idtp~Dl~~a~~~~~~ 209 (214)
......+..+||+.++++..|.++.+|+++..|++|+||+||++|+.+++.
T Consensus 178 ~~a~~~~~~~tDdas~~e~~G~~v~lV~G~~~n~KiTtpeDL~~a~~il~~ 228 (230)
T COG1211 178 ARAFAEGREITDDASAIEKAGGPVSLVEGSADNFKITTPEDLEIAEAILRR 228 (230)
T ss_pred HHHHhcCCCcCCHHHHHHHcCCCeEEEecCcceeEecCHHHHHHHHHHhcC
Confidence 987777888999999999999999999999999999999999999999875
|
|
| >PLN02728 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-42 Score=273.09 Aligned_cols=210 Identities=83% Similarity=1.239 Sum_probs=187.8
Q ss_pred CCCCCCceeeeeCCeehHHHHHHHHhcCCCcCeEEEEeCCCchHHHHHHHHhcCCcEEEecCCccHHHHHHHHHhhcccC
Q 028081 1 MGANMPKQYLPLLGQPIALYSFYTFSRMVEVKEIVVVCDPSYSDIFEETKEKINVDLKFSLPGKERQDSVYSGLQEVDFN 80 (214)
Q Consensus 1 m~~~~~K~l~~l~gkpli~~~i~~~~~~~~~~~iiVv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sv~~al~~~~~~ 80 (214)
||++.||+|++++|+|||.|+++++..++.+++|+||+++++.+.++....+++..+.++.||.+|++|+++|+..+..+
T Consensus 38 mg~~~pKqll~l~Gkpll~~tl~~~~~~~~i~~IvVV~~~~~~~~~~~~~~~~~~~i~~v~gg~~r~~SV~~gl~~l~~~ 117 (252)
T PLN02728 38 MGANMPKQYLPLLGQPIALYSLYTFARMPEVKEIVVVCDPSYRDVFEEAVENIDVPLKFALPGKERQDSVFNGLQEVDAN 117 (252)
T ss_pred CCCCCCcceeEECCeEHHHHHHHHHHhCCCCCeEEEEeCHHHHHHHHHHHHhcCCceEEcCCCCchHHHHHHHHHhccCC
Confidence 67778999999999999999999999876689999999987655555555556555667778899999999999988645
Q ss_pred CCeEEEEcCCCCCCCHHHHHHHHHHHHhcCCeEEeeeccccEEEecCCCceeeecCccchhhhcCCcccChHHHHHHHHH
Q 028081 81 SELVCIHDSARPLVLSKDVQKVLMDALRVGAAVLGVPAKATIKEANSESFVVRTLDRKTLWEMQTPQVIKPDLLKKGFEL 160 (214)
Q Consensus 81 ~~~vl~~~~d~P~v~~~~i~~~i~~~~~~~~~i~~~~~~~~~~~~~~~g~v~~~~~r~~~~~~~~p~~f~~~~l~~~~~~ 160 (214)
.++|++||++|||+++++|+++++....+++++++.|..|+++.+++++.+..+++|+.+|.+||||+|+...|.++|+.
T Consensus 118 ~~~VlihDaarP~vs~~~i~~li~~~~~~ga~i~~~~~~dtik~v~~~~~v~~t~~R~~l~~~QTPQ~F~~~~l~~a~~~ 197 (252)
T PLN02728 118 SELVCIHDSARPLVTSADIEKVLKDAAVHGAAVLGVPVKATIKEANSDSFVVKTLDRKRLWEMQTPQVIKPELLRRGFEL 197 (252)
T ss_pred CCEEEEecCcCCCCCHHHHHHHHHHHhhCCeEEEeecchhhEEEecCCCceeeccChHHeEEEeCCccchHHHHHHHHHH
Confidence 68999999999999999999999988888899999999999998876778888999999999999999999999999998
Q ss_pred HHhcCCCCCcHHHHHHhCCCCeEEEecCCCCcccCCHHHHHHHHHHhhcc
Q 028081 161 VNREGLEVTDDVSIVEHLKHPVYITEGSYTNIKVTTPDDLLIAERILNLS 210 (214)
Q Consensus 161 ~~~~~~~~~d~~~~~~~~g~~i~~v~~~~~~~~Idtp~Dl~~a~~~~~~~ 210 (214)
...+++++||++++++..|.+|.+++++..|++||||+||..|+.+++.+
T Consensus 198 ~~~~~~~~TDd~~~~~~~g~~V~~v~g~~~N~KITtpeDl~~a~~~l~~~ 247 (252)
T PLN02728 198 VEREGLEVTDDVSIVEALKHPVFITEGSYTNIKVTTPDDMLVAERILNER 247 (252)
T ss_pred HHhcCCCcCcHHHHHHHcCCceEEEecCcccccCCCHHHHHHHHHHHhhc
Confidence 77677889999999999999999999999999999999999999998755
|
|
| >PRK13385 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.3e-39 Score=251.58 Aligned_cols=210 Identities=33% Similarity=0.556 Sum_probs=181.6
Q ss_pred CCCCCCceeeeeCCeehHHHHHHHHhcCCCcCeEEEEeCCCchHHHHHHHHhcCC---cEEEecCCccHHHHHHHHHhhc
Q 028081 1 MGANMPKQYLPLLGQPIALYSFYTFSRMVEVKEIVVVCDPSYSDIFEETKEKINV---DLKFSLPGKERQDSVYSGLQEV 77 (214)
Q Consensus 1 m~~~~~K~l~~l~gkpli~~~i~~~~~~~~~~~iiVv~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~sv~~al~~~ 77 (214)
||++.||+|++++|||||.|+++++..++.+++|+||++++++..+.+.+..++. .+.++.+|.++.+|+++|+..+
T Consensus 16 ~g~~~~K~l~~l~gkpll~~~i~~~~~~~~~~~ivVv~~~~~~~~~~~~~~~~~~~~~~~~~v~~g~~r~~sv~~gl~~~ 95 (230)
T PRK13385 16 MNAPLNKMWLDLVGEPIFIHALRPFLADNRCSKIIIVTQAQERKHVQDLMKQLNVADQRVEVVKGGTERQESVAAGLDRI 95 (230)
T ss_pred cCCCCCcceeEECCeEHHHHHHHHHHcCCCCCEEEEEeChhhHHHHHHHHHhcCcCCCceEEcCCCchHHHHHHHHHHhc
Confidence 6777899999999999999999999987778999999988765555555666653 3567778888999999999988
Q ss_pred ccCCCeEEEEcCCCCCCCHHHHHHHHHHHHhcCCeEEeeeccccEEEecCCCceeeecCccchhhhcCCcccChHHHHHH
Q 028081 78 DFNSELVCIHDSARPLVLSKDVQKVLMDALRVGAAVLGVPAKATIKEANSESFVVRTLDRKTLWEMQTPQVIKPDLLKKG 157 (214)
Q Consensus 78 ~~~~~~vl~~~~d~P~v~~~~i~~~i~~~~~~~~~i~~~~~~~~~~~~~~~g~v~~~~~r~~~~~~~~p~~f~~~~l~~~ 157 (214)
. +.+.+++|+||+||+++++|+++++.+..+++++++.++.++++.+. +|.+..+++|+.++.+||||+|+++.|.++
T Consensus 96 ~-~~d~vli~~~d~P~i~~~~i~~li~~~~~~~~~~~~~~~~dti~~~~-~~~~~~~i~r~~~~~~qtpq~f~~~~l~~~ 173 (230)
T PRK13385 96 G-NEDVILVHDGARPFLTQDIIDRLLEGVAKYGAAICAVEVKDTVKRVK-DKQVIETVDRNELWQGQTPQAFELKILQKA 173 (230)
T ss_pred c-CCCeEEEccCCCCCCCHHHHHHHHHHHhhCCcEEEEEeccceEEEEc-CCeeEeccCHHHHhhhcCCceeeHHHHHHH
Confidence 5 35789999999999999999999998877788899999999988875 466677889999999999999999999999
Q ss_pred HHHHHhcCCCCCcHHHHHHhCCCCeEEEecCCCCcccCCHHHHHHHHHHhhcccC
Q 028081 158 FELVNREGLEVTDDVSIVEHLKHPVYITEGSYTNIKVTTPDDLLIAERILNLSSE 212 (214)
Q Consensus 158 ~~~~~~~~~~~~d~~~~~~~~g~~i~~v~~~~~~~~Idtp~Dl~~a~~~~~~~~~ 212 (214)
++.....++++||+..++.+.|.+|.+++++..+++||||+||..|+.+++..++
T Consensus 174 ~~~~~~~~~~~td~~~~~~~~g~~v~~v~~~~~n~kItt~eDl~~a~~~l~~~~~ 228 (230)
T PRK13385 174 HRLASEQQFLGTDEASLVERSPHPVKLVQGSYYNIKLTTPEDMPLAKAILQGDIA 228 (230)
T ss_pred HHHHHhcCCCcCcHHHHHHHcCCCEEEEECCcccCcCCCHHHHHHHHHHHhhccc
Confidence 9865444567899999999999999999999999999999999999999976554
|
|
| >PRK00155 ispD 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.1e-36 Score=235.82 Aligned_cols=211 Identities=41% Similarity=0.623 Sum_probs=177.8
Q ss_pred CCCCCCceeeeeCCeehHHHHHHHHhcCCCcCeEEEEeCCCchHHHHHHHHhcCCcEEEecCCccHHHHHHHHHhhcccC
Q 028081 1 MGANMPKQYLPLLGQPIALYSFYTFSRMVEVKEIVVVCDPSYSDIFEETKEKINVDLKFSLPGKERQDSVYSGLQEVDFN 80 (214)
Q Consensus 1 m~~~~~K~l~~l~gkpli~~~i~~~~~~~~~~~iiVv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sv~~al~~~~~~ 80 (214)
||++.||+|++++|+|||.|+++++..++.+++|+|++++++++.+..........+.++.++.++.+|+..|+..++ +
T Consensus 17 ~g~~~~K~l~~~~g~pli~~~l~~l~~~~~~~~ivvv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sv~~~l~~~~-~ 95 (227)
T PRK00155 17 MGADRPKQYLPLGGKPILEHTLEAFLAHPRIDEIIVVVPPDDRPDFAELLLAKDPKVTVVAGGAERQDSVLNGLQALP-D 95 (227)
T ss_pred cCCCCCceeeEECCEEHHHHHHHHHHcCCCCCEEEEEeChHHHHHHHHHhhccCCceEEeCCcchHHHHHHHHHHhCC-C
Confidence 566789999999999999999999998766899999999875333322221111235567777789999999999884 3
Q ss_pred CCeEEEEcCCCCCCCHHHHHHHHHHHHhcCCeEEeeeccccEEEecCCCceeeecCccchhhhcCCcccChHHHHHHHHH
Q 028081 81 SELVCIHDSARPLVLSKDVQKVLMDALRVGAAVLGVPAKATIKEANSESFVVRTLDRKTLWEMQTPQVIKPDLLKKGFEL 160 (214)
Q Consensus 81 ~~~vl~~~~d~P~v~~~~i~~~i~~~~~~~~~i~~~~~~~~~~~~~~~g~v~~~~~r~~~~~~~~p~~f~~~~l~~~~~~ 160 (214)
.+++++++||+||+++++|+++++.+..+++++++.++.+++++++++|.+.++++|+.++.+|+|++|+++.|.+++..
T Consensus 96 ~d~vlv~~~D~P~i~~~~i~~li~~~~~~~~~~~~~~~~~~~~~v~~~g~~~~~~~r~~~~~~~~p~~f~~~~l~~~~~~ 175 (227)
T PRK00155 96 DDWVLVHDAARPFLTPDDIDRLIEAAEETGAAILAVPVKDTIKRSDDGGGIVDTPDRSGLWAAQTPQGFRIELLREALAR 175 (227)
T ss_pred CCEEEEccCccCCCCHHHHHHHHHHHhhCCCEEEEEeccccEEEEcCCCceeecCChHHheeeeCCccchHHHHHHHHHH
Confidence 67999999999999999999999988777777888999888777654567778889999999999999999999999988
Q ss_pred HHhcCCCCCcHHHHHHhCCCCeEEEecCCCCcccCCHHHHHHHHHHhhcccC
Q 028081 161 VNREGLEVTDDVSIVEHLKHPVYITEGSYTNIKVTTPDDLLIAERILNLSSE 212 (214)
Q Consensus 161 ~~~~~~~~~d~~~~~~~~g~~i~~v~~~~~~~~Idtp~Dl~~a~~~~~~~~~ 212 (214)
..++++|++|...+++..|.++..++++..++|||||+||+.||.+++.+++
T Consensus 176 ~~~~~~~~~d~~~~~~~~~~~i~~~~~~~~~~~Idt~~Dl~~ae~~~~~~~~ 227 (227)
T PRK00155 176 ALAEGKTITDDASAVERLGKPVRLVEGRYDNIKITTPEDLALAEAILKRRIA 227 (227)
T ss_pred HHhcCCCcCcHHHHHHHcCCCeEEEecCcccccCCCHHHHHHHHHHHHhccC
Confidence 7777889999999999999999999988889999999999999999987753
|
|
| >TIGR00453 ispD 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-35 Score=229.30 Aligned_cols=205 Identities=39% Similarity=0.631 Sum_probs=173.3
Q ss_pred CCCCCCceeeeeCCeehHHHHHHHHhcCCCcCeEEEEeCCCchHHHHHHHHhcCCcEEEecCCccHHHHHHHHHhhcccC
Q 028081 1 MGANMPKQYLPLLGQPIALYSFYTFSRMVEVKEIVVVCDPSYSDIFEETKEKINVDLKFSLPGKERQDSVYSGLQEVDFN 80 (214)
Q Consensus 1 m~~~~~K~l~~l~gkpli~~~i~~~~~~~~~~~iiVv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sv~~al~~~~~~ 80 (214)
||++.||+|++++|||||+|+++++..++.+++|+|++++++.+.+....... ..+.++.++.++.+|+++|+..+. +
T Consensus 13 ~~~~~~K~l~~l~gkpll~~~l~~l~~~~~~~~ivVv~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~sl~~~l~~~~-~ 90 (217)
T TIGR00453 13 FGSGVPKQYLELGGRPLLEHTLDAFLAHPAIDEVVVVVSPEDQEFFQKYLVAR-AVPKIVAGGDTRQDSVRNGLKALK-D 90 (217)
T ss_pred CCCCCCccEeEECCeEHHHHHHHHHhcCCCCCEEEEEEChHHHHHHHHHhhcC-CcEEEeCCCchHHHHHHHHHHhCC-C
Confidence 66667999999999999999999999875689999999987544344333221 134566777788999999999872 3
Q ss_pred CCeEEEEcCCCCCCCHHHHHHHHHHHHhcCCeEEeeeccccEEEecCCCceeeecCccchhhhcCCcccChHHHHHHHHH
Q 028081 81 SELVCIHDSARPLVLSKDVQKVLMDALRVGAAVLGVPAKATIKEANSESFVVRTLDRKTLWEMQTPQVIKPDLLKKGFEL 160 (214)
Q Consensus 81 ~~~vl~~~~d~P~v~~~~i~~~i~~~~~~~~~i~~~~~~~~~~~~~~~g~v~~~~~r~~~~~~~~p~~f~~~~l~~~~~~ 160 (214)
.|++++++||+||+++++|+++++.+..+++++++.|..+++..++++|.+..+++|+.++.+|+|++|+...|.+++..
T Consensus 91 ~d~vlv~~~D~P~i~~~~i~~li~~~~~~~~~~~~~~~~~~v~~~~~~g~~~~~~~r~~~~~~~~p~~f~~~~l~~~~~~ 170 (217)
T TIGR00453 91 AEWVLVHDAARPFVPKELLDRLLEALRKAGAAILALPVADTLKRVEADGFIVETVDREGLWAAQTPQAFRTELLKKALAR 170 (217)
T ss_pred CCEEEEccCccCCCCHHHHHHHHHHHhhCCcEEEeEeccceEEEEcCCCceeecCChHHeEEEeCCCcccHHHHHHHHHH
Confidence 68999999999999999999999988766777888999998777665577888899999999999999999999998877
Q ss_pred HHhcCCCCCcHHHHHHhCCCCeEEEecCCCCcccCCHHHHHHHHHHh
Q 028081 161 VNREGLEVTDDVSIVEHLKHPVYITEGSYTNIKVTTPDDLLIAERIL 207 (214)
Q Consensus 161 ~~~~~~~~~d~~~~~~~~g~~i~~v~~~~~~~~Idtp~Dl~~a~~~~ 207 (214)
..+.++|++|...+++..|.++..++++..+++||||+||+.||+++
T Consensus 171 ~~~~~~~~~d~~~~~~~~g~~i~~~~~~~~~~~I~~~~Dl~~ae~~~ 217 (217)
T TIGR00453 171 AKEEGFEITDDASAVEKLGGKVALVEGDALNFKITTPEDLALAEALL 217 (217)
T ss_pred HHhcCCCCCcHHHHHHHcCCCeEEEecCccccccCCHHHHHHHHHhC
Confidence 66678899999999999999999999988889999999999999864
|
Members of this protein family are 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase, the IspD protein of the deoxyxylulose pathway of IPP biosynthesis. In about twenty percent of bacterial genomes, this protein occurs as IspDF, a bifunctional fusion protein. |
| >PRK09382 ispDF bifunctional 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase/2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.7e-34 Score=238.00 Aligned_cols=196 Identities=32% Similarity=0.413 Sum_probs=166.4
Q ss_pred CCCCCCceeeeeCCeehHHHHHHHHhcCCCcCeEEEEeCCCchHHHHHHHHhcCCcEEEecCCccHHHHHHHHHhhcccC
Q 028081 1 MGANMPKQYLPLLGQPIALYSFYTFSRMVEVKEIVVVCDPSYSDIFEETKEKINVDLKFSLPGKERQDSVYSGLQEVDFN 80 (214)
Q Consensus 1 m~~~~~K~l~~l~gkpli~~~i~~~~~~~~~~~iiVv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sv~~al~~~~~~ 80 (214)
||++.||+|++++|+|||+|+++++.+++.+++|+||+++++.+..+.....+. .+.++.+|.+|++|+++|++.++
T Consensus 19 mg~~~pKqll~l~GkPll~~tl~~l~~~~~i~~IvVVv~~~~~~~~~~~~~~~~-~v~~v~gG~~r~~SV~~gL~~l~-- 95 (378)
T PRK09382 19 FSAEVKKQWLRIGGKPLWLHVLENLSSAPAFKEIVVVIHPDDIAYMKKALPEIK-FVTLVTGGATRQESVRNALEALD-- 95 (378)
T ss_pred CCCCCCeeEEEECCeeHHHHHHHHHhcCCCCCeEEEEeChHHHHHHHHhcccCC-eEEEeCCCchHHHHHHHHHHhcC--
Confidence 566789999999999999999999998877899999998875433333222221 25567888899999999999886
Q ss_pred CCeEEEEcCCCCCCCHHHHHHHHHHHHhcCCeEEeeeccccEEEecCCCceeeecCccchhhhcCCcccChHHHHHHHHH
Q 028081 81 SELVCIHDSARPLVLSKDVQKVLMDALRVGAAVLGVPAKATIKEANSESFVVRTLDRKTLWEMQTPQVIKPDLLKKGFEL 160 (214)
Q Consensus 81 ~~~vl~~~~d~P~v~~~~i~~~i~~~~~~~~~i~~~~~~~~~~~~~~~g~v~~~~~r~~~~~~~~p~~f~~~~l~~~~~~ 160 (214)
.++|++|+||+||+++++|+++++.+..+++++++.|+.|++++.+ .+++|+.++.+||||.|+...+.+++
T Consensus 96 ~d~VLVhdadrPfv~~e~I~~li~~~~~~~a~i~~~pv~Dtik~~~------~tldR~~l~~~QTPQ~f~~~~l~~a~-- 167 (378)
T PRK09382 96 SEYVLIHDAARPFVPKELIDRLIEALDKADCVLPALPVADTLKRAN------ETVDREGLKLIQTPQLSRTKTLKAAA-- 167 (378)
T ss_pred CCeEEEeeccccCCCHHHHHHHHHHhhcCCeEEEEEEeccCcEEee------eEcCcccEEEEECCCCCCHHHHHHHH--
Confidence 4899999999999999999999998877788999999999987632 36899999999999999988777654
Q ss_pred HHhcCCCCCcHHHHHHhCCCCeEEEecCCCCcccCCHHHHHHHHHHhhc
Q 028081 161 VNREGLEVTDDVSIVEHLKHPVYITEGSYTNIKVTTPDDLLIAERILNL 209 (214)
Q Consensus 161 ~~~~~~~~~d~~~~~~~~g~~i~~v~~~~~~~~Idtp~Dl~~a~~~~~~ 209 (214)
..++++||++++++..|.+|.+++++..|+||+||+||..|+.+++.
T Consensus 168 --~~~~~~TDd~sl~~~~G~~V~~v~g~~~n~KITtpeDL~~A~~~l~~ 214 (378)
T PRK09382 168 --DGRGDFTDDSSAAEAAGGKVALVEGSEDLHKLTYKEDLKMADLLLSP 214 (378)
T ss_pred --hCCCCcccHHHHHHHcCCcEEEEECCCcccCCCCHHHHHHHHHHhcc
Confidence 24577999999999999999999999999999999999999998865
|
|
| >cd02516 CDP-ME_synthetase CDP-ME synthetase is involved in mevalonate-independent isoprenoid production | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-33 Score=219.76 Aligned_cols=202 Identities=41% Similarity=0.612 Sum_probs=171.9
Q ss_pred CCCCCCceeeeeCCeehHHHHHHHHhcCCCcCeEEEEeCCCchHHHHHHHHh--cCCcEEEecCCccHHHHHHHHHhhcc
Q 028081 1 MGANMPKQYLPLLGQPIALYSFYTFSRMVEVKEIVVVCDPSYSDIFEETKEK--INVDLKFSLPGKERQDSVYSGLQEVD 78 (214)
Q Consensus 1 m~~~~~K~l~~l~gkpli~~~i~~~~~~~~~~~iiVv~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~sv~~al~~~~ 78 (214)
||+..||+|++++|||||.|+++++..++.+++|+|+++++.......+ .. ....+.++.++.++.+|+++|++.++
T Consensus 14 ~~~~~~K~l~~i~Gkpll~~~i~~l~~~~~~~~ivVv~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~si~~al~~~~ 92 (218)
T cd02516 14 MGADIPKQFLELGGKPVLEHTLEAFLAHPAIDEIVVVVPPDDIDLAKEL-AKYGLSKVVKIVEGGATRQDSVLNGLKALP 92 (218)
T ss_pred CCCCCCcceeEECCeEHHHHHHHHHhcCCCCCEEEEEeChhHHHHHHHH-HhcccCCCeEEECCchHHHHHHHHHHHhcc
Confidence 4555699999999999999999999987668999999998764333221 11 22245667777778999999999884
Q ss_pred -cCCCeEEEEcCCCCCCCHHHHHHHHHHHHhcCCeEEeeeccccEEEecCCCceeeecCccchhhhcCCcccChHHHHHH
Q 028081 79 -FNSELVCIHDSARPLVLSKDVQKVLMDALRVGAAVLGVPAKATIKEANSESFVVRTLDRKTLWEMQTPQVIKPDLLKKG 157 (214)
Q Consensus 79 -~~~~~vl~~~~d~P~v~~~~i~~~i~~~~~~~~~i~~~~~~~~~~~~~~~g~v~~~~~r~~~~~~~~p~~f~~~~l~~~ 157 (214)
.+.+++++++||+||+++++|+++++.+..+++++++.|..+++++.+++|.+.++++|+.++.+++|++|+++.+.++
T Consensus 93 ~~~~~~vlv~~~D~P~i~~~~i~~li~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~r~~~~~~~~P~~f~~~~~~~~ 172 (218)
T cd02516 93 DADPDIVLIHDAARPFVSPELIDRLIDALKEYGAAIPAVPVTDTIKRVDDDGVVVETLDREKLWAAQTPQAFRLDLLLKA 172 (218)
T ss_pred cCCCCEEEEccCcCCCCCHHHHHHHHHHHhhCCcEEEEEeccccEEEecCCCceeecCChHHhhhhcCCCcccHHHHHHH
Confidence 2468999999999999999999999988777778888999998777776788889999999999999999999999999
Q ss_pred HHHHHhcCCCCCcHHHHHHhCCCCeEEEecCCCCcccCCHHHHHHH
Q 028081 158 FELVNREGLEVTDDVSIVEHLKHPVYITEGSYTNIKVTTPDDLLIA 203 (214)
Q Consensus 158 ~~~~~~~~~~~~d~~~~~~~~g~~i~~v~~~~~~~~Idtp~Dl~~a 203 (214)
+....+.|+|+||...++...|.++..++++..++|||||+||+.|
T Consensus 173 ~~~~~~~~~~~td~~~~~~~~~~~v~~v~~~~~~~~i~t~~dl~~~ 218 (218)
T cd02516 173 HRQASEEGEEFTDDASLVEAAGGKVALVEGSEDNIKITTPEDLALA 218 (218)
T ss_pred HHHHHhcCCCcCcHHHHHHHcCCCeEEEecCcccccCCCHHHHhhC
Confidence 9888878899999999999999999999988889999999999753
|
4-diphosphocytidyl-2-methyl-D-erythritol synthase (CDP-ME), also called 2C-methyl-d-erythritol 4-phosphate cytidylyltransferase catalyzes the third step in the alternative (non-mevalonate) pathway of Isopentenyl diphosphate (IPP) biosynthesis: the formation of 4-diphosphocytidyl-2C-methyl-D-erythritol from CTP and 2C-methyl-D-erythritol 4-phosphate. This mevalonate independent pathway that utilizes pyruvate and glyceraldehydes 3-phosphate as starting materials for production of IPP occurs in a variety of bacteria, archaea and plant cells, but is absent in mammals. Thus, CDP-ME synthetase is an attractive targets for the structure-based design of selective antibacterial, herbicidal and antimalarial drugs. |
| >TIGR00466 kdsB 3-deoxy-D-manno-octulosonate cytidylyltransferase | Back alignment and domain information |
|---|
Probab=99.94 E-value=2e-25 Score=176.10 Aligned_cols=189 Identities=17% Similarity=0.221 Sum_probs=138.6
Q ss_pred CceeeeeCCeehHHHHHHHHhcCCCcCeEEEEeCCCchHHHHHHHHhcCCcEEE----ecCCccHHHHHHHHHhhcccCC
Q 028081 6 PKQYLPLLGQPIALYSFYTFSRMVEVKEIVVVCDPSYSDIFEETKEKINVDLKF----SLPGKERQDSVYSGLQEVDFNS 81 (214)
Q Consensus 6 ~K~l~~l~gkpli~~~i~~~~~~~~~~~iiVv~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~sv~~al~~~~~~~ 81 (214)
+|+|++++|||||.|++++++++. +++|+|++++++ +.+.+..++..+.+ ..+|.++..++..++.. . +.
T Consensus 15 ~K~L~~l~GkPli~~~le~~~~~~-~d~VvVvt~~~~---i~~~~~~~g~~~v~~~~~~~~Gt~r~~~~~~~l~~-~-~~ 88 (238)
T TIGR00466 15 GKPLEDIFGKPMIVHVAENANESG-ADRCIVATDDES---VAQTCQKFGIEVCMTSKHHNSGTERLAEVVEKLAL-K-DD 88 (238)
T ss_pred CCeecccCCcCHHHHHHHHHHhCC-CCeEEEEeCHHH---HHHHHHHcCCEEEEeCCCCCChhHHHHHHHHHhCC-C-CC
Confidence 699999999999999999999875 899999998654 45666677655433 23566666666555532 2 35
Q ss_pred CeEEEEcCCCCCCCHHHHHHHHHHHHh--cCCeEEeeeccc--------cEEEe-cCCCce----ee--ecCccchhhhc
Q 028081 82 ELVCIHDSARPLVLSKDVQKVLMDALR--VGAAVLGVPAKA--------TIKEA-NSESFV----VR--TLDRKTLWEMQ 144 (214)
Q Consensus 82 ~~vl~~~~d~P~v~~~~i~~~i~~~~~--~~~~i~~~~~~~--------~~~~~-~~~g~v----~~--~~~r~~~~~~~ 144 (214)
++|++|+||+||+++++|+++++.+.. .+.++++.|..+ +++.+ +.+|.+ .. +.+|+.++..|
T Consensus 89 d~Vli~~gD~Pli~~~~I~~li~~~~~~~~~~a~~~~~~~d~~~~~~p~~vk~v~~~~g~alyfsr~~ip~~R~~~~~~~ 168 (238)
T TIGR00466 89 ERIVNLQGDEPFIPKEIIRQVADNLATKNVPMAALAVKIHDAEEAFNPNAVKVVLDSQGYALYFSRSLIPFDRDFFAKRQ 168 (238)
T ss_pred CEEEEEcCCcCcCCHHHHHHHHHHHhcCCCCEEEEeeecCCHHHccCCCceEEEeCCCCeEEEecCCCCCCCCCcccccc
Confidence 899999999999999999999998754 466888899877 66665 445542 22 23677666666
Q ss_pred CCc-----------ccChHHHHHHHHHHHhcCCCCCcHHHHHH--hCCCCeEEEecCCC-CcccCCHHHHH
Q 028081 145 TPQ-----------VIKPDLLKKGFELVNREGLEVTDDVSIVE--HLKHPVYITEGSYT-NIKVTTPDDLL 201 (214)
Q Consensus 145 ~p~-----------~f~~~~l~~~~~~~~~~~~~~~d~~~~~~--~~g~~i~~v~~~~~-~~~Idtp~Dl~ 201 (214)
+|| +|+++.|..+... ..+.++..+..++++ ++|.+|.++..+.. .++||||+|++
T Consensus 169 tpq~~~~~~h~Giy~~~~~~L~~~~~~-~~~~le~~e~leqlr~le~g~~i~~~~~~~~~~~~vdt~~d~~ 238 (238)
T TIGR00466 169 TPVGDNLLRHIGIYGYRAGFIEEYVAW-KPCVLEEIEKLEQLRVLYYGEKIHVKIAQEVPSVGVDTQEDLE 238 (238)
T ss_pred cccccceeEEEEEEeCCHHHHHHHHhC-CCCcccccchhHHHhhhhcCCceEEEEeCCCCCCCCCChHHcC
Confidence 664 5778877765433 334466677777776 57999998876655 68999999984
|
|
| >COG1212 KdsB CMP-2-keto-3-deoxyoctulosonic acid synthetase [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=99.94 E-value=2.6e-25 Score=167.57 Aligned_cols=202 Identities=15% Similarity=0.227 Sum_probs=143.3
Q ss_pred CCCC-CC-ceeeeeCCeehHHHHHHHHhcCCCcCeEEEEeCCCchHHHHHHHHhcCCcEEEe----cCCccHHHHHHHHH
Q 028081 1 MGAN-MP-KQYLPLLGQPIALYSFYTFSRMVEVKEIVVVCDPSYSDIFEETKEKINVDLKFS----LPGKERQDSVYSGL 74 (214)
Q Consensus 1 m~~~-~~-K~l~~l~gkpli~~~i~~~~~~~~~~~iiVv~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~sv~~al 74 (214)
|+|+ .| |+|..|+|||||.|+.+++.+++ .++++|+|+++. +.+.++++|..+.+. ..|++| +..++
T Consensus 12 ~~STRLpgKPLadI~GkpmI~rV~e~a~~s~-~~rvvVATDde~---I~~av~~~G~~avmT~~~h~SGTdR---~~Ev~ 84 (247)
T COG1212 12 LASTRLPGKPLADIGGKPMIVRVAERALKSG-ADRVVVATDDER---IAEAVQAFGGEAVMTSKDHQSGTDR---LAEVV 84 (247)
T ss_pred hhcccCCCCchhhhCCchHHHHHHHHHHHcC-CCeEEEEcCCHH---HHHHHHHhCCEEEecCCCCCCccHH---HHHHH
Confidence 3443 45 99999999999999999999985 899999999875 578888898777664 345556 44555
Q ss_pred hhcc-cCCCeEEEEcCCCCCCCHHHHHHHHHHHHhc--CCeEEeeecccc--------EEEe-cCCCcee----ee--cC
Q 028081 75 QEVD-FNSELVCIHDSARPLVLSKDVQKVLMDALRV--GAAVLGVPAKAT--------IKEA-NSESFVV----RT--LD 136 (214)
Q Consensus 75 ~~~~-~~~~~vl~~~~d~P~v~~~~i~~~i~~~~~~--~~~i~~~~~~~~--------~~~~-~~~g~v~----~~--~~ 136 (214)
+.+. .+.++|+++|||.||+.++.|+.+++.+..+ +.+.++.++.+. ++.+ +.+|+.- .+ ..
T Consensus 85 ~~l~~~~~~iIVNvQGDeP~i~p~~I~~~~~~L~~~~~~~aTl~~~i~~~ee~~nPN~VKvV~d~~g~ALYFSRs~iP~~ 164 (247)
T COG1212 85 EKLGLPDDEIIVNVQGDEPFIEPEVIRAVAENLENSNADMATLAVKITDEEEAFNPNVVKVVLDKEGYALYFSRAPIPYG 164 (247)
T ss_pred HhcCCCcceEEEEccCCCCCCCHHHHHHHHHHHHhCCcceeeeeeecCCHHHhcCCCcEEEEEcCCCcEEEEEcCCCCCc
Confidence 5543 2467999999999999999999999988764 346667776553 3333 3334321 11 13
Q ss_pred cc-----chhhhcCCcccChHHHHHHHHHHHhcCCCCCcHHHHHH--hCCCCeEEEecCC-CCcccCCHHHHHHHHHHhh
Q 028081 137 RK-----TLWEMQTPQVIKPDLLKKGFELVNREGLEVTDDVSIVE--HLKHPVYITEGSY-TNIKVTTPDDLLIAERILN 208 (214)
Q Consensus 137 r~-----~~~~~~~p~~f~~~~l~~~~~~~~~~~~~~~d~~~~~~--~~g~~i~~v~~~~-~~~~Idtp~Dl~~a~~~~~ 208 (214)
|+ .++++..-|+|+++.|.++.... .+.++-++..++++ ++|.+|++..... -.++|||||||++++++++
T Consensus 165 rd~~~~~p~l~HIGIYayr~~~L~~f~~~~-ps~LE~~E~LEQLR~Le~G~kI~v~i~~~~p~~gVDT~EDLe~v~~~~~ 243 (247)
T COG1212 165 RDNFGGTPFLRHIGIYAYRAGFLERFVALK-PSPLEKIESLEQLRVLENGEKIHVEIVKEVPSIGVDTPEDLERVRKILS 243 (247)
T ss_pred ccccCCcchhheeehHHhHHHHHHHHHhcC-CchhHHHHHHHHHHHHHcCCeeEEEEeccCCCCCCCCHHHHHHHHHHHH
Confidence 33 34455556889988887755432 22244455555555 5899999876654 4599999999999999986
Q ss_pred cc
Q 028081 209 LS 210 (214)
Q Consensus 209 ~~ 210 (214)
..
T Consensus 244 ~~ 245 (247)
T COG1212 244 NN 245 (247)
T ss_pred hh
Confidence 43
|
|
| >COG1083 NeuA CMP-N-acetylneuraminic acid synthetase [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=99.93 E-value=6.7e-25 Score=164.17 Aligned_cols=194 Identities=15% Similarity=0.198 Sum_probs=145.4
Q ss_pred CCceeeeeCCeehHHHHHHHHhcCCCcCeEEEEeCCCchHHHHHHHHhcCCcEEE------ecCCccHHHHHHHHHhhcc
Q 028081 5 MPKQYLPLLGQPIALYSFYTFSRMVEVKEIVVVCDPSYSDIFEETKEKINVDLKF------SLPGKERQDSVYSGLQEVD 78 (214)
Q Consensus 5 ~~K~l~~l~gkpli~~~i~~~~~~~~~~~iiVv~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~sv~~al~~~~ 78 (214)
..||+.+++|||||.|+|++++.++.||+|+|+++.+. +.+.+++||..+.+ ..+.++...++.+++....
T Consensus 18 ~~KNi~~~~gkpLi~~~I~aA~ns~~fd~VviSsDs~~---Il~~A~~ygak~~~~Rp~~LA~D~ast~~~~lh~le~~~ 94 (228)
T COG1083 18 KNKNIRKFGGKPLIGYTIEAALNSKLFDKVVISSDSEE---ILEEAKKYGAKVFLKRPKELASDRASTIDAALHALESFN 94 (228)
T ss_pred CccchHHhCCcchHHHHHHHHhcCCccceEEEcCCcHH---HHHHHHHhCccccccCChhhccCchhHHHHHHHHHHHhc
Confidence 34999999999999999999999999999999998865 56778899876632 3344444567888888776
Q ss_pred cCCCeEEEEcCCCCCCCHHHHHHHHHHHHh--cCCeEEeeeccccEEEe--cCCCceeeecCccchhhhcCCcc-cChHH
Q 028081 79 FNSELVCIHDSARPLVLSKDVQKVLMDALR--VGAAVLGVPAKATIKEA--NSESFVVRTLDRKTLWEMQTPQV-IKPDL 153 (214)
Q Consensus 79 ~~~~~vl~~~~d~P~v~~~~i~~~i~~~~~--~~~~i~~~~~~~~~~~~--~~~g~v~~~~~r~~~~~~~~p~~-f~~~~ 153 (214)
...+.++.++++.||++..+|+++++.+.+ ++++++++|.+...++. .++|.+...-+ .|.. -++|.
T Consensus 95 ~~~~~~~lLq~TsPLl~~~~ik~A~e~f~~~~~~sl~sa~e~e~~p~k~f~~~~~~~~~~~~--------~~~~~~rrQ~ 166 (228)
T COG1083 95 IDEDTLILLQPTSPLLTSLHIKEAFEKFLNNQYDSLFSAVECEHHPYKAFSLNNGEVKPVNE--------DPDFETRRQD 166 (228)
T ss_pred cccCeeEEeccCccccchhHHHHHHHHHhcCCCcceEEEeecccchHHHHHhcCCceeeccc--------CCcccccccc
Confidence 556789999999999999999999998875 46789999988764332 22343332211 1222 24577
Q ss_pred HHHHHHHHHhcCCCCCcHHHHHHh---CC-CCeEEEecCCCCcccCCHHHHHHHHHHhhccc
Q 028081 154 LKKGFELVNREGLEVTDDVSIVEH---LK-HPVYITEGSYTNIKVTTPDDLLIAERILNLSS 211 (214)
Q Consensus 154 l~~~~~~~~~~~~~~~d~~~~~~~---~g-~~i~~v~~~~~~~~Idtp~Dl~~a~~~~~~~~ 211 (214)
|+.+|... ..+|+.+...++++ .+ ....++++....+|||++.||+++|.++..+.
T Consensus 167 Lpk~Y~~N--gaiYi~~~~~l~e~~~~f~~~~~~y~m~~~~~~DID~~~Dl~iae~l~~~~~ 226 (228)
T COG1083 167 LPKAYREN--GAIYINKKDALLENDCFFIPNTILYEMPEDESIDIDTELDLEIAENLIFLKE 226 (228)
T ss_pred chhhhhhc--CcEEEehHHHHhhcCceecCCceEEEcCcccccccccHHhHHHHHHHhhhhh
Confidence 88888762 23688877666664 33 55567788888999999999999999987554
|
|
| >COG1207 GlmU N-acetylglucosamine-1-phosphate uridyltransferase (contains nucleotidyltransferase and I-patch acetyltransferase domains) [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=99.93 E-value=1.7e-24 Score=176.76 Aligned_cols=209 Identities=18% Similarity=0.203 Sum_probs=161.6
Q ss_pred CCCCCCceeeeeCCeehHHHHHHHHhcCCCcCeEEEEeCCCchHHHHHHHHhcCCcEEEecC--CccHHHHHHHHHhhcc
Q 028081 1 MGANMPKQYLPLLGQPIALYSFYTFSRMVEVKEIVVVCDPSYSDIFEETKEKINVDLKFSLP--GKERQDSVYSGLQEVD 78 (214)
Q Consensus 1 m~~~~~K~l~~l~gkpli~~~i~~~~~~~~~~~iiVv~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~sv~~al~~~~ 78 (214)
|+|..||.|++++||||++|+++++.... .++++||.++.. +.+++.+.+.. ++.++.+ ..+..+++..|+.++.
T Consensus 16 MkS~lPKVLH~vaGkpMl~hVi~~a~~l~-~~~i~vVvGh~a-e~V~~~~~~~~-~v~~v~Q~eqlGTgHAV~~a~~~l~ 92 (460)
T COG1207 16 MKSDLPKVLHPVAGKPMLEHVIDAARALG-PDDIVVVVGHGA-EQVREALAERD-DVEFVLQEEQLGTGHAVLQALPALA 92 (460)
T ss_pred ccCCCcccchhccCccHHHHHHHHHhhcC-cceEEEEEcCCH-HHHHHHhcccc-CceEEEecccCChHHHHHhhhhhhh
Confidence 89999999999999999999999999875 799999999987 56666555332 3555443 2334788999999984
Q ss_pred cCC-CeEEEEcCCCCCCCHHHHHHHHHHHHh--cCCeEEeeeccccEEE--e--cCCCceeeecCc-------cchhhhc
Q 028081 79 FNS-ELVCIHDSARPLVLSKDVQKVLMDALR--VGAAVLGVPAKATIKE--A--NSESFVVRTLDR-------KTLWEMQ 144 (214)
Q Consensus 79 ~~~-~~vl~~~~d~P~v~~~~i~~~i~~~~~--~~~~i~~~~~~~~~~~--~--~~~g~v~~~~~r-------~~~~~~~ 144 (214)
++. ..+|++.||.||+++++++.|++.... .+..++.....||..+ + +++|.+.++++. ..+..++
T Consensus 93 ~~~~g~vLVl~GD~PLit~~TL~~L~~~~~~~~~~~tvLt~~~~dP~GYGRIvr~~~g~V~~IVE~KDA~~eek~I~eiN 172 (460)
T COG1207 93 DDYDGDVLVLYGDVPLITAETLEELLAAHPAHGAAATVLTAELDDPTGYGRIVRDGNGEVTAIVEEKDASEEEKQIKEIN 172 (460)
T ss_pred cCCCCcEEEEeCCcccCCHHHHHHHHHhhhhcCCceEEEEEEcCCCCCcceEEEcCCCcEEEEEEcCCCCHHHhcCcEEe
Confidence 333 368999999999999999999988764 3446777778887432 1 335677777643 2334455
Q ss_pred C-CcccChHHHHHHHHHHHhc----CCCCCcHHHHHHhCCCCeEEEecC--CCCcccCCHHHHHHHHHHhhcccC
Q 028081 145 T-PQVIKPDLLKKGFELVNRE----GLEVTDDVSIVEHLKHPVYITEGS--YTNIKVTTPDDLLIAERILNLSSE 212 (214)
Q Consensus 145 ~-p~~f~~~~l~~~~~~~~~~----~~~~~d~~~~~~~~g~~i~~v~~~--~~~~~Idtp~Dl~~a~~~~~~~~~ 212 (214)
+ -++|....|.+++....++ +||+||...++...|.+|..+..+ .+..+|++..+|+.+|.++++|++
T Consensus 173 tGiy~f~~~~L~~~L~~l~nnNaqgEYYLTDvI~i~~~~g~~V~a~~~~d~~E~~GVN~R~qLa~~e~~~q~r~~ 247 (460)
T COG1207 173 TGIYAFDGAALLRALPKLSNNNAQGEYYLTDVIAIARNEGEKVRAVHVDDEEEVLGVNDRVQLAEAERIMQRRIA 247 (460)
T ss_pred eeEEEEcHHHHHHHHHHhccccccCcEeHHHHHHHHHhCCCeEEEEecCchHHhcCcCcHHHHHHHHHHHHHHHH
Confidence 5 4899999899988876543 389999999999999999987654 467899999999999999998764
|
|
| >TIGR03584 PseF pseudaminic acid CMP-transferase | Back alignment and domain information |
|---|
Probab=99.92 E-value=3.9e-24 Score=167.04 Aligned_cols=189 Identities=13% Similarity=0.101 Sum_probs=134.5
Q ss_pred CceeeeeCCeehHHHHHHHHhcCCCcCeEEEEeCCCchHHHHHHHHhcCCcEEE------ecCCccHHHHHHHHHhhccc
Q 028081 6 PKQYLPLLGQPIALYSFYTFSRMVEVKEIVVVCDPSYSDIFEETKEKINVDLKF------SLPGKERQDSVYSGLQEVDF 79 (214)
Q Consensus 6 ~K~l~~l~gkpli~~~i~~~~~~~~~~~iiVv~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~sv~~al~~~~~ 79 (214)
+|++++++|||||.|+++++.+++.+++|+|+|++++ +.+.++.+|..+.+ ..+++++.+++.+|+..++.
T Consensus 15 ~Knl~~l~GkpLi~~ti~~a~~s~~~d~IvVstd~~~---i~~~a~~~g~~v~~~r~~~l~~d~~~~~~si~~~l~~l~~ 91 (222)
T TIGR03584 15 RKNIKPFCGKPMIAYSIEAALNSGLFDKVVVSTDDEE---IAEVAKSYGASVPFLRPKELADDFTGTAPVVKHAIEELKL 91 (222)
T ss_pred CccchhcCCcCHHHHHHHHHHhCCCCCEEEEeCCCHH---HHHHHHHcCCEeEEeChHHHcCCCCCchHHHHHHHHHHhh
Confidence 3999999999999999999999988999999888754 45666777765433 35667788999999988742
Q ss_pred --CCCeEEEEcCCCCCCCHHHHHHHHHHHHh--cCCeEEeeecccc-E--EEecCCCceeeecCccchhhhcCCcccChH
Q 028081 80 --NSELVCIHDSARPLVLSKDVQKVLMDALR--VGAAVLGVPAKAT-I--KEANSESFVVRTLDRKTLWEMQTPQVIKPD 152 (214)
Q Consensus 80 --~~~~vl~~~~d~P~v~~~~i~~~i~~~~~--~~~~i~~~~~~~~-~--~~~~~~g~v~~~~~r~~~~~~~~p~~f~~~ 152 (214)
+.|.|++++||+||+++++|+++++.+.+ +++++++++.... . ...+++|......+... .-++|
T Consensus 92 ~~~~d~v~~l~~tsPl~~~~~I~~~i~~~~~~~~ds~~sv~~~~~~~~~~~~~~~~g~~~~~~~~~~--------~~~rQ 163 (222)
T TIGR03584 92 QKQYDHACCIYATAPFLQAKILKEAFELLKQPNAHFVFSVTSFAFPIQRAFKLKENGGVEMFFPEHF--------NTRSQ 163 (222)
T ss_pred cCCCCEEEEecCCCCcCCHHHHHHHHHHHHhCCCCEEEEeeccCCChHHheEECCCCcEEecCCCcc--------cCCCC
Confidence 36899999999999999999999998864 4667888775432 1 12233454332211110 11445
Q ss_pred HHHHHHHHHHhcC-CCCCcHHHHHHh---CCCCeE-EEecCCCCcccCCHHHHHHHHHHhh
Q 028081 153 LLKKGFELVNREG-LEVTDDVSIVEH---LKHPVY-ITEGSYTNIKVTTPDDLLIAERILN 208 (214)
Q Consensus 153 ~l~~~~~~~~~~~-~~~~d~~~~~~~---~g~~i~-~v~~~~~~~~Idtp~Dl~~a~~~~~ 208 (214)
.++..|.. +| +|+.....+++. .|.++. +++.+...+||||++||.+||.+++
T Consensus 164 d~~~~y~~---nga~y~~~~~~~~~~~~~~~~~~~~~~m~~~~~iDID~~~D~~~ae~l~~ 221 (222)
T TIGR03584 164 DLEEAYHD---AGQFYWGKSQAWLESGPIFSPHSIPIVLPRHLVQDIDTLEDWERAELLYK 221 (222)
T ss_pred CCchheee---CCeEEEEEHHHHHhcCCccCCCcEEEEeCccceeCCCCHHHHHHHHHHHh
Confidence 55555543 33 666665544442 355655 4556678999999999999999874
|
The sequences in this family include the pfam02348 (cytidyltransferase) domain and are homologous to the NeuA protein responsible for the transfer of CMP to neuraminic acid. According to, this gene is responsible for the transfer of CMP to the structurally related sugar, pseudaminic acid which is observed as a component of sugar modifications of flagellin in Campylobacter species. This gene is commonly observed in apparent operons with other genes responsible for the biosynthesis of pseudaminic acid and as a component of flagellar and exopolysaccharide biosynthesis loci. |
| >cd02513 CMP-NeuAc_Synthase CMP-NeuAc_Synthase activates N-acetylneuraminic acid by adding CMP moiety | Back alignment and domain information |
|---|
Probab=99.90 E-value=6.2e-23 Score=160.41 Aligned_cols=188 Identities=15% Similarity=0.214 Sum_probs=128.1
Q ss_pred CceeeeeCCeehHHHHHHHHhcCCCcCeEEEEeCCCchHHHHHHHHhcCCcEEE------ecCCccHHHHHHHHHhhccc
Q 028081 6 PKQYLPLLGQPIALYSFYTFSRMVEVKEIVVVCDPSYSDIFEETKEKINVDLKF------SLPGKERQDSVYSGLQEVDF 79 (214)
Q Consensus 6 ~K~l~~l~gkpli~~~i~~~~~~~~~~~iiVv~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~sv~~al~~~~~ 79 (214)
+|+|++++|||||.|+++++.+++.+++|+|+++++. +.+.+..++..+.+ ..++.++.+++.+|+++++.
T Consensus 17 ~K~l~~l~Gkpll~~~l~~l~~~~~~~~IvV~~~~~~---i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~l~~ 93 (223)
T cd02513 17 GKNIRPLGGKPLIAWTIEAALESKLFDRVVVSTDDEE---IAEVARKYGAEVPFLRPAELATDTASSIDVILHALDQLEE 93 (223)
T ss_pred CcccchhCCccHHHHHHHHHHhCCCCCEEEEECCcHH---HHHHHHHhCCCceeeCChHHCCCCCCcHHHHHHHHHHHHH
Confidence 5999999999999999999998877899999886543 34445555542222 24555678999999987752
Q ss_pred ---CCCeEEEEcCCCCCCCHHHHHHHHHHHHh--cCCeEEeeeccccEEEe---cCCCce-eeecCccchhhhcCCcccC
Q 028081 80 ---NSELVCIHDSARPLVLSKDVQKVLMDALR--VGAAVLGVPAKATIKEA---NSESFV-VRTLDRKTLWEMQTPQVIK 150 (214)
Q Consensus 80 ---~~~~vl~~~~d~P~v~~~~i~~~i~~~~~--~~~~i~~~~~~~~~~~~---~~~g~v-~~~~~r~~~~~~~~p~~f~ 150 (214)
..+.+++++||+||+++++|+++++.+.. .++++++.+..++.+.. .++|.. .....++..+.+++|+.|.
T Consensus 94 ~~~~~d~vlv~~~D~P~i~~~~i~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~~ 173 (223)
T cd02513 94 LGRDFDIVVLLQPTSPLRSAEDIDEAIELLLSEGADSVFSVTEFHRFPWRALGLDDNGLEPVNYPEDKRTRRQDLPPAYH 173 (223)
T ss_pred hCCCCCEEEEeCCCCCcCCHHHHHHHHHHHHhCCCCEEEEEEecCcCcHHheeeccCCceeccCcccccCCcCCChhHee
Confidence 24799999999999999999999998865 35677777777654331 112211 1112334445556665554
Q ss_pred hHHHHHHHHHHHhcCCCCCcHHHHHH---hCCCCeE-EEecCCCCcccCCHHHHHHHHHHh
Q 028081 151 PDLLKKGFELVNREGLEVTDDVSIVE---HLKHPVY-ITEGSYTNIKVTTPDDLLIAERIL 207 (214)
Q Consensus 151 ~~~l~~~~~~~~~~~~~~~d~~~~~~---~~g~~i~-~v~~~~~~~~Idtp~Dl~~a~~~~ 207 (214)
.. .++|......+.+ ..|.++. ++.++..++|||||+||.+||.++
T Consensus 174 ~n-----------~~~y~~~~~~~~~~~~~~g~~~~~~~~~~~~~~dI~~~~D~~~ae~~~ 223 (223)
T cd02513 174 EN-----------GAIYIAKREALLESNSFFGGKTGPYEMPRERSIDIDTEEDFELAEALL 223 (223)
T ss_pred EC-----------CEEEEEEHHHHHhcCCccCCCeEEEEeCccceeCCCCHHHHHHHHHhC
Confidence 21 1234333332332 2477875 556677899999999999999864
|
CMP-N-acetylneuraminic acid synthetase (CMP-NeuAc synthetase) or acylneuraminate cytidylyltransferase catalyzes the transfer the CMP moiety of CTP to the anomeric hydroxyl group of NeuAc in the presence of Mg++. It is the second to last step in the sialylation of the oligosaccharide component of glycoconjugates by providing the activated sugar-nucleotide cytidine 5'-monophosphate N-acetylneuraminic acid (CMP-Neu5Ac), the substrate for sialyltransferases. Eukaryotic CMP-NeuAc synthetases are predominantly located in the nucleus. The activated CMP-Neu5Ac diffuses from the nucleus into the cytoplasm. |
| >PLN02917 CMP-KDO synthetase | Back alignment and domain information |
|---|
Probab=99.89 E-value=7.1e-22 Score=160.01 Aligned_cols=199 Identities=14% Similarity=0.173 Sum_probs=133.8
Q ss_pred CceeeeeCCeehHHHHHHHHhcCCCcCeEEEEeCCCchHHHHHHHHhcCCcEEEe----cCCccHHHHHHHHHhhcccCC
Q 028081 6 PKQYLPLLGQPIALYSFYTFSRMVEVKEIVVVCDPSYSDIFEETKEKINVDLKFS----LPGKERQDSVYSGLQEVDFNS 81 (214)
Q Consensus 6 ~K~l~~l~gkpli~~~i~~~~~~~~~~~iiVv~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~sv~~al~~~~~~~ 81 (214)
+|+|++++|||||.|+++++..++.++.|+|+++++ .+.+.+..++..+.+. .+| .+.+..|++.++.+.
T Consensus 63 ~K~L~~i~GkPLL~~vi~~a~~~~~~~~VVV~~~~e---~I~~~~~~~~v~vi~~~~~~~~G---T~~~~~a~~~l~~~~ 136 (293)
T PLN02917 63 GKPLVHILGKPMIQRTWERAKLATTLDHIVVATDDE---RIAECCRGFGADVIMTSESCRNG---TERCNEALKKLEKKY 136 (293)
T ss_pred CCCeeeECCEEHHHHHHHHHHcCCCCCEEEEECChH---HHHHHHHHcCCEEEeCCcccCCc---hHHHHHHHHhccCCC
Confidence 499999999999999999999877667777665543 3566666666443322 233 344567777775346
Q ss_pred CeEEEEcCCCCCCCHHHHHHHHHHHHhcC-CeEE--eeec--ccc-----EEEe-cCCCc-e---eeec--Ccc------
Q 028081 82 ELVCIHDSARPLVLSKDVQKVLMDALRVG-AAVL--GVPA--KAT-----IKEA-NSESF-V---VRTL--DRK------ 138 (214)
Q Consensus 82 ~~vl~~~~d~P~v~~~~i~~~i~~~~~~~-~~i~--~~~~--~~~-----~~~~-~~~g~-v---~~~~--~r~------ 138 (214)
|++++++||+||+++++|+++++.+.... ..++ +.++ .++ ++.+ +++|. + ..++ .++
T Consensus 137 d~Vlil~gD~PlI~~~tI~~li~~~~~~~~~iv~t~~~~~~~~~~~~ygrv~vv~~~~g~alyfsr~~Ipe~kd~~~~~~ 216 (293)
T PLN02917 137 DIVVNIQGDEPLIEPEIIDGVVKALQAAPDAVFSTAVTSLKPEDASDPNRVKCVVDNQGYAIYFSRGLIPYNKSGKVNPQ 216 (293)
T ss_pred CEEEEecCCcCCCCHHHHHHHHHHHHhcCCceEEEEeeecCHHHhcCCCceEEEECCCCeEEEeecCcCCcCCCcccccc
Confidence 89999999999999999999999775432 3222 2222 222 3322 33454 2 1323 122
Q ss_pred chhhh-cCCcccChHHHHHHHHHHHhc----CCCCCcHHHHHHhCCCCeEEEecCCCCcccCCHHHHHHHHHHhhcccCC
Q 028081 139 TLWEM-QTPQVIKPDLLKKGFELVNRE----GLEVTDDVSIVEHLKHPVYITEGSYTNIKVTTPDDLLIAERILNLSSES 213 (214)
Q Consensus 139 ~~~~~-~~p~~f~~~~l~~~~~~~~~~----~~~~~d~~~~~~~~g~~i~~v~~~~~~~~Idtp~Dl~~a~~~~~~~~~~ 213 (214)
.++.. -.-++|+.+.|. .+....++ .+|+||.. +.+.|.+|..+..+...++||||+||+.+|++++++..|
T Consensus 217 ~i~~~n~Giy~f~~~~L~-~l~~l~~~n~e~e~yLtdl~--~le~G~~i~~~~~~~~~~GVnt~~dL~~ae~~~~~~~~~ 293 (293)
T PLN02917 217 FPYLLHLGIQSYDAKFLK-IYPELPPTPLQLEEDLEQLK--VLENGYKMKVIKVDHEAHGVDTPEDVEKIEALMRERNIS 293 (293)
T ss_pred cceEEEEEEEEeCHHHHH-HHHcCCCCcccchhccHHHH--HHhCCCceEEEEeCCCCCCCCCHHHHHHHHHHHHHcCCC
Confidence 11222 235899999888 55554332 36788875 457899998876666788999999999999999877543
|
|
| >COG2068 Uncharacterized MobA-related protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.88 E-value=5.1e-21 Score=143.29 Aligned_cols=174 Identities=20% Similarity=0.248 Sum_probs=125.9
Q ss_pred CCceeeeeCCeehHHHHHHHHhcCCCcCeEEEEeCCCchHHHHHHHHhcCCcEEEecC---CccHHHHHHHHHhhcccCC
Q 028081 5 MPKQYLPLLGQPIALYSFYTFSRMVEVKEIVVVCDPSYSDIFEETKEKINVDLKFSLP---GKERQDSVYSGLQEVDFNS 81 (214)
Q Consensus 5 ~~K~l~~l~gkpli~~~i~~~~~~~~~~~iiVv~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~sv~~al~~~~~~~ 81 (214)
.||+|+++.|+||+.|+++++...+ ++++|||++++..+......... .+.++.+ ..+.++|++.|+.++..+.
T Consensus 21 ~~KlLap~~g~plv~~~~~~a~~a~-~~~vivV~g~~~~~~~~a~~~~~--~~~~v~npd~~~Gls~Sl~ag~~a~~~~~ 97 (199)
T COG2068 21 QPKLLAPLDGKPLVRASAETALSAG-LDRVIVVTGHRVAEAVEALLAQL--GVTVVVNPDYAQGLSTSLKAGLRAADAEG 97 (199)
T ss_pred CcceecccCCCcHHHHHHHHHHhcC-CCeEEEEeCcchhhHHHhhhccC--CeEEEeCcchhhhHhHHHHHHHHhcccCC
Confidence 5899999999999999999999875 89999999997422223222222 3444432 2235889999999987444
Q ss_pred CeEEEEcCCCCCCCHHHHHHHHHHHHhcCCeEEeeeccccEEEecCCCceeeecCccchhhhcCCcccChHHHHHHHHHH
Q 028081 82 ELVCIHDSARPLVLSKDVQKVLMDALRVGAAVLGVPAKATIKEANSESFVVRTLDRKTLWEMQTPQVIKPDLLKKGFELV 161 (214)
Q Consensus 82 ~~vl~~~~d~P~v~~~~i~~~i~~~~~~~~~i~~~~~~~~~~~~~~~g~v~~~~~r~~~~~~~~p~~f~~~~l~~~~~~~ 161 (214)
+.++++.||||++++++++++++.+...+ ..+.|.... ..| .|..|.+..+..+....
T Consensus 98 ~~v~~~lgDmP~V~~~t~~rl~~~~~~~~--~~v~p~~~g-----~rG---------------~Pv~~~~~~~~~l~~l~ 155 (199)
T COG2068 98 DGVVLMLGDMPQVTPATVRRLIAAFRARG--AAVRPVYGG-----ARG---------------HPVLLSKDLFPALARLS 155 (199)
T ss_pred CeEEEEeCCCCCCCHHHHHHHHHhccccC--ceeeeeccC-----CcC---------------CceeechhHHHHHhhcC
Confidence 68999999999999999999999887653 233443321 112 47888887765443332
Q ss_pred HhcCCCCCcHHHHHHhCCCCeEEEec-CCCCcccCCHHHHHHHHHHhh
Q 028081 162 NREGLEVTDDVSIVEHLKHPVYITEG-SYTNIKVTTPDDLLIAERILN 208 (214)
Q Consensus 162 ~~~~~~~~d~~~~~~~~g~~i~~v~~-~~~~~~Idtp~Dl~~a~~~~~ 208 (214)
++ +....++++.|.....|+. +....|||||+||..++.++.
T Consensus 156 GD-----~G~r~ll~~~~~~~~~V~~~~g~llDVDTped~~~a~~~~~ 198 (199)
T COG2068 156 GD-----VGARQLLEEGGLPLVEVEVDAGVLLDVDTPEDLARAQDLLR 198 (199)
T ss_pred Cc-----hhHHHHHHhcCcceEeeccCCceEecCCCHHHHHHHHHhhc
Confidence 21 3456678888888877776 567899999999999998765
|
|
| >cd02517 CMP-KDO-Synthetase CMP-KDO synthetase catalyzes the activation of KDO which is an essential component of the lipopolysaccharide | Back alignment and domain information |
|---|
Probab=99.87 E-value=2.2e-20 Score=147.57 Aligned_cols=202 Identities=16% Similarity=0.206 Sum_probs=129.7
Q ss_pred CCCCC--CceeeeeCCeehHHHHHHHHhcCCCcCeEEEEeCCCchHHHHHHHHhcCCcEEEecC-CccHHHHHHHHHhhc
Q 028081 1 MGANM--PKQYLPLLGQPIALYSFYTFSRMVEVKEIVVVCDPSYSDIFEETKEKINVDLKFSLP-GKERQDSVYSGLQEV 77 (214)
Q Consensus 1 m~~~~--~K~l~~l~gkpli~~~i~~~~~~~~~~~iiVv~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~sv~~al~~~ 77 (214)
|+|.+ ||+|++++|||||+|+++++.+++.+++|+|+++++ .+.+.+..++..+.+... ......++..++..+
T Consensus 10 g~s~R~~~K~l~~i~gkpll~~~l~~l~~~~~i~~ivvv~~~~---~i~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~~~ 86 (239)
T cd02517 10 YASSRLPGKPLADIAGKPMIQHVYERAKKAKGLDEVVVATDDE---RIADAVESFGGKVVMTSPDHPSGTDRIAEVAEKL 86 (239)
T ss_pred CCCCCCCCCCCcccCCcCHHHHHHHHHHhCCCCCEEEEECCcH---HHHHHHHHcCCEEEEcCcccCchhHHHHHHHHhc
Confidence 45665 899999999999999999999885589999998764 355555566654433322 122344577777666
Q ss_pred ccCCCeEEEEcCCCCCCCHHHHHHHHHHHHhc-C--CeEEeeeccccE---------EEecCCCceeeec-----C-cc-
Q 028081 78 DFNSELVCIHDSARPLVLSKDVQKVLMDALRV-G--AAVLGVPAKATI---------KEANSESFVVRTL-----D-RK- 138 (214)
Q Consensus 78 ~~~~~~vl~~~~d~P~v~~~~i~~~i~~~~~~-~--~~i~~~~~~~~~---------~~~~~~g~v~~~~-----~-r~- 138 (214)
....+.+++++||+||+++++++++++.+... + .++++.+..++- ...+++|.+.... + +.
T Consensus 87 ~~~~d~vlv~~gD~Pli~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~v~~~~~~~~~~~~~~ 166 (239)
T cd02517 87 DADDDIVVNVQGDEPLIPPEMIDQVVAALKDDPGVDMATLATPISDEEELFNPNVVKVVLDKDGYALYFSRSPIPYPRDS 166 (239)
T ss_pred CCCCCEEEEecCCCCCCCHHHHHHHHHHHHhCCCCCEEEEEEEcCCHHHccCCCCCEEEECCCCCEEEecCCCCCCCCCC
Confidence 42247899999999999999999999877543 2 344556654321 1223345553211 1 00
Q ss_pred ---chhhhc-CCcccChHHHHHHHHHHHhcCCCCCcHHHH--HHhCCCCeEEEecCCCCcccCCHHHHHHHHHH
Q 028081 139 ---TLWEMQ-TPQVIKPDLLKKGFELVNREGLEVTDDVSI--VEHLKHPVYITEGSYTNIKVTTPDDLLIAERI 206 (214)
Q Consensus 139 ---~~~~~~-~p~~f~~~~l~~~~~~~~~~~~~~~d~~~~--~~~~g~~i~~v~~~~~~~~Idtp~Dl~~a~~~ 206 (214)
...... .-+.|+.+.+..+... ....++.++.... +...|.++..+..+..+++||||+||..|+++
T Consensus 167 ~~~~~~~~~~Giy~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~g~~v~~~~~~~~w~~i~t~~dl~~a~~~ 239 (239)
T cd02517 167 SEDFPYYKHIGIYAYRRDFLLRFAAL-PPSPLEQIESLEQLRALENGYKIKVVETDHESIGVDTPEDLERVEAL 239 (239)
T ss_pred CCCCceeEEEEEEEECHHHHHHHHhC-CCchhhhhhhHHHHHHHHCCCceEEEEeCCCCCCCCCHHHHHHHHhC
Confidence 011122 2477887776654332 1122445554443 34577888877655569999999999999863
|
CMP-KDO Synthetase: 3-Deoxy-D-manno-octulosonate cytidylyltransferase (CMP-KDO synthetase) catalyzes the conversion of CTP and 3-deoxy-D-manno-octulosonate into CMP-3-deoxy-D-manno-octulosonate (CMP-KDO) and pyrophosphate. KDO is an essential component of the lipopolysaccharide found in the outer surface of gram-negative eubacteria. It is also a constituent of the capsular polysaccharides of some gram-negative eubacteria. Its presence in the cell wall polysaccharides of green algae and plant were also discovered. However, they have not been found in yeast and animals. The absence of the enzyme in mammalian cells makes it an attractive target molecule for drug design. |
| >PRK13368 3-deoxy-manno-octulosonate cytidylyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.86 E-value=4.6e-20 Score=145.69 Aligned_cols=201 Identities=16% Similarity=0.230 Sum_probs=124.7
Q ss_pred CCCC-C-CceeeeeCCeehHHHHHHHHhcCCCcCeEEEEeCCCchHHHHHHHHhcCCcEEEecC-CccHHHHHHHHHhhc
Q 028081 1 MGAN-M-PKQYLPLLGQPIALYSFYTFSRMVEVKEIVVVCDPSYSDIFEETKEKINVDLKFSLP-GKERQDSVYSGLQEV 77 (214)
Q Consensus 1 m~~~-~-~K~l~~l~gkpli~~~i~~~~~~~~~~~iiVv~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~sv~~al~~~ 77 (214)
|+|. . +|+|++++|||||+|+++++++++.+++|+|+++++ .+++.++.++..+.+... .......+.+++..+
T Consensus 11 g~s~R~~~K~l~~i~GkPli~~~i~~l~~~~~~~~ivv~t~~~---~i~~~~~~~~~~v~~~~~~~~~g~~~~~~a~~~~ 87 (238)
T PRK13368 11 YGSSRLPGKPLLDILGKPMIQHVYERAAQAAGVEEVYVATDDQ---RIEDAVEAFGGKVVMTSDDHLSGTDRLAEVMLKI 87 (238)
T ss_pred CCCCCCCCCccCccCCcCHHHHHHHHHHhcCCCCeEEEECChH---HHHHHHHHcCCeEEecCccCCCccHHHHHHHHhC
Confidence 3554 3 499999999999999999999985689999999764 356666666655433221 111233567777766
Q ss_pred ccCCCeEEEEcCCCCCCCHHHHHHHHHHHHhcC--CeE-Eeeecc------ccE---EEecCCCceeeecCc-----cc-
Q 028081 78 DFNSELVCIHDSARPLVLSKDVQKVLMDALRVG--AAV-LGVPAK------ATI---KEANSESFVVRTLDR-----KT- 139 (214)
Q Consensus 78 ~~~~~~vl~~~~d~P~v~~~~i~~~i~~~~~~~--~~i-~~~~~~------~~~---~~~~~~g~v~~~~~r-----~~- 139 (214)
. .|.+++++||+||+++++++++++.+...+ .++ .+.+.. ++. ...+++|.+....+. ..
T Consensus 88 ~--~d~~lv~~~D~P~i~~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~g~v~~~~~~~~~~~~~~ 165 (238)
T PRK13368 88 E--ADIYINVQGDEPMIRPRDIDTLIQPMLDDPSINVATLCAPISTEEEFESPNVVKVVVDKNGDALYFSRSPIPSRRDG 165 (238)
T ss_pred C--CCEEEEEcCCcCcCCHHHHHHHHHHHHHCCCccceeEEEEcCCHHHhcCcCCCEEEECCCCCEEEeeCCCCCCCCCC
Confidence 3 578999999999999999999999886433 232 232221 111 122334655433211 11
Q ss_pred hhhhcCC----cccChHHHHHHHHHHHhcCCC-CCc-HHHHHHhCCCCeEEEecCCCCcccCCHHHHHHHHHHh
Q 028081 140 LWEMQTP----QVIKPDLLKKGFELVNREGLE-VTD-DVSIVEHLKHPVYITEGSYTNIKVTTPDDLLIAERIL 207 (214)
Q Consensus 140 ~~~~~~p----~~f~~~~l~~~~~~~~~~~~~-~~d-~~~~~~~~g~~i~~v~~~~~~~~Idtp~Dl~~a~~~~ 207 (214)
......+ |+|+.+.|.. +......+.+ ++. +...+-..|.++..+..+..++|||||+||..|+.++
T Consensus 166 ~~~~~~~n~giy~~~~~~l~~-~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~~~~~~~~DI~t~~Dl~~a~~~~ 238 (238)
T PRK13368 166 ESARYLKHVGIYAFRRDVLQQ-FSQLPETPLEQIESLEQLRALEHGEKIRMVEVAATSIGVDTPEDLERVRAIM 238 (238)
T ss_pred CCCceeEEEEEEEeCHHHHHH-HHcCCCChhhhhhhHHHHHHHHCCCceEEEEeCCCCCCCCCHHHHHHHHHhC
Confidence 1111122 7888776654 2211001100 111 1112333677888777777899999999999999864
|
|
| >cd02540 GT2_GlmU_N_bac N-terminal domain of bacterial GlmU | Back alignment and domain information |
|---|
Probab=99.86 E-value=2.8e-20 Score=145.98 Aligned_cols=198 Identities=16% Similarity=0.161 Sum_probs=137.9
Q ss_pred CCCCCCceeeeeCCeehHHHHHHHHhcCCCcCeEEEEeCCCchHHHHHHHHhcCCcEEEecCCccHHHHHHHHHhhcccC
Q 028081 1 MGANMPKQYLPLLGQPIALYSFYTFSRMVEVKEIVVVCDPSYSDIFEETKEKINVDLKFSLPGKERQDSVYSGLQEVDFN 80 (214)
Q Consensus 1 m~~~~~K~l~~l~gkpli~~~i~~~~~~~~~~~iiVv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sv~~al~~~~~~ 80 (214)
|+...||+|++++|||||.|+++++.+++ +++|+|+++++. +.+.+.+..++..+.......+..+++++|+..+..+
T Consensus 12 ~~~~~pK~l~~v~gkpli~~~i~~l~~~~-i~~i~iv~~~~~-~~i~~~~~~~~~~~~~~~~~~g~~~ai~~a~~~~~~~ 89 (229)
T cd02540 12 MKSDLPKVLHPLAGKPMLEHVLDAARALG-PDRIVVVVGHGA-EQVKKALANPNVEFVLQEEQLGTGHAVKQALPALKDF 89 (229)
T ss_pred CCCCCChhcceeCCccHHHHHHHHHHhCC-CCeEEEEECCCH-HHHHHHhCCCCcEEEECCCCCCCHHHHHHHHHhhccC
Confidence 44457999999999999999999999886 899999988774 5566666655443322222334688999999888532
Q ss_pred CCeEEEEcCCCCCCCHHHHHHHHHHHHhc--CCeEEeeeccccE----EEecCCCceeeecCccch-------hhhcC-C
Q 028081 81 SELVCIHDSARPLVLSKDVQKVLMDALRV--GAAVLGVPAKATI----KEANSESFVVRTLDRKTL-------WEMQT-P 146 (214)
Q Consensus 81 ~~~vl~~~~d~P~v~~~~i~~~i~~~~~~--~~~i~~~~~~~~~----~~~~~~g~v~~~~~r~~~-------~~~~~-p 146 (214)
.+.+++++||+||++.+.++++++.+.+. ++++++.+..++. ...+++|.+..+.++... ...++ .
T Consensus 90 ~~~vli~~~D~p~~~~~~i~~l~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~v~~~~ek~~~~~~~~~~~~~~~gi 169 (229)
T cd02540 90 EGDVLVLYGDVPLITPETLQRLLEAHREAGADVTVLTAELEDPTGYGRIIRDGNGKVLRIVEEKDATEEEKAIREVNAGI 169 (229)
T ss_pred CCeEEEEeCCccccCHHHHHHHHHHHHhcCCcEEEEEEEcCCCCCccEEEEcCCCCEEEEEECCCCChHHHhhceEEeEE
Confidence 57899999999999999999999987653 3445555555542 112444666555433211 22233 6
Q ss_pred cccChHHHHHHHHHHHh----cCCCCCcHHHHHHhCCCCeEEEec--CCCCcccCCHHHH
Q 028081 147 QVIKPDLLKKGFELVNR----EGLEVTDDVSIVEHLKHPVYITEG--SYTNIKVTTPDDL 200 (214)
Q Consensus 147 ~~f~~~~l~~~~~~~~~----~~~~~~d~~~~~~~~g~~i~~v~~--~~~~~~Idtp~Dl 200 (214)
+.|+.+.+.+++..... .++++++....+...|.+|..++. ...++.|++|.|+
T Consensus 170 y~~~~~~~~~~l~~~~~~~~~~~~~~~d~~~~~~~~g~~v~~~~~~~~~~~~~~~~~~~~ 229 (229)
T cd02540 170 YAFDAEFLFEALPKLTNNNAQGEYYLTDIIALAVADGLKVAAVLADDEEEVLGVNDRVQL 229 (229)
T ss_pred EEEEHHHHHHHHHHcccccCCCcEEHHHHHHHHHHCCCEEEEEEcCCcceEecCCChHhC
Confidence 88888777776654322 224577777777778888887654 4689999999985
|
The N-terminal domain of N-Acetylglucosamine-1-phosphate uridyltransferase (GlmU). GlmU is an essential bacterial enzyme with both an acetyltransferase and an uridyltransferase activity which have been mapped to the C-terminal and N-terminal domains, respectively. This family represents the N-terminal uridyltransferase. GlmU performs the last two steps in the synthesis of UDP-N-acetylglucosamine (UDP-GlcNAc), which is an essential precursor in both the peptidoglycan and the lipopolysaccharide metabolic pathways in Gram-positive and Gram-negative bacteria, respectively. |
| >PRK14356 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.83 E-value=2.2e-19 Score=154.53 Aligned_cols=206 Identities=16% Similarity=0.200 Sum_probs=138.3
Q ss_pred CCCCCCceeeeeCCeehHHHHHHHHhcCCCcCeEEEEeCCCchHHHHHHHHhcCCcEEEec--CCccHHHHHHHHHhhcc
Q 028081 1 MGANMPKQYLPLLGQPIALYSFYTFSRMVEVKEIVVVCDPSYSDIFEETKEKINVDLKFSL--PGKERQDSVYSGLQEVD 78 (214)
Q Consensus 1 m~~~~~K~l~~l~gkpli~~~i~~~~~~~~~~~iiVv~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~sv~~al~~~~ 78 (214)
|+.+.||+|++++|||||+|+++++.... +++|+|++++.. +.+++.....+ +.++. ...+..++++.+++.+.
T Consensus 19 ~~~~~pK~l~~i~gkpli~~~l~~l~~~~-~~~iivv~~~~~-~~i~~~~~~~~--~~~v~~~~~~Gt~~al~~a~~~l~ 94 (456)
T PRK14356 19 MHSDKPKVLQTLLGEPMLRFVYRALRPLF-GDNVWTVVGHRA-DMVRAAFPDED--ARFVLQEQQLGTGHALQCAWPSLT 94 (456)
T ss_pred CCCCCCceecccCCCcHHHHHHHHHHhcC-CCcEEEEECCCH-HHHHHhccccC--ceEEEcCCCCCcHHHHHHHHHHHh
Confidence 56678999999999999999999998874 789999998764 44554443322 23332 22334678888988875
Q ss_pred c-CCCeEEEEcCCCCCCCHHHHHHHHHHHHhcCCeEEeeeccccEE--E-ecCCCceeeecCccchhh---------hc-
Q 028081 79 F-NSELVCIHDSARPLVLSKDVQKVLMDALRVGAAVLGVPAKATIK--E-ANSESFVVRTLDRKTLWE---------MQ- 144 (214)
Q Consensus 79 ~-~~~~vl~~~~d~P~v~~~~i~~~i~~~~~~~~~i~~~~~~~~~~--~-~~~~g~v~~~~~r~~~~~---------~~- 144 (214)
. ..+.+++++||+||+++++++.+++.+...++++...++.++.. . ..++|.+..+.++..+.. ..
T Consensus 95 ~~~~d~vlv~~gD~P~i~~~~i~~li~~~~~~~~~l~~~~~~~~~~~g~v~~~~g~V~~~~ek~~~~~~~~~~~~~~~~~ 174 (456)
T PRK14356 95 AAGLDRVLVVNGDTPLVTTDTIDDFLKEAAGADLAFMTLTLPDPGAYGRVVRRNGHVAAIVEAKDYDEALHGPETGEVNA 174 (456)
T ss_pred hcCCCcEEEEeCCcccCCHHHHHHHHHHHhcCCEEEEEEEcCCCCCceEEEEcCCeEEEEEECCCCChHHhhhhcCeEEE
Confidence 3 24789999999999999999999987764445555566555421 1 123566655544322110 00
Q ss_pred CCcccChHHHHHHHHHHH----hcCCCCCcHHHHHHhCCCCeEEEecC--CCCcccCCHHHHHHHHHHhhcc
Q 028081 145 TPQVIKPDLLKKGFELVN----REGLEVTDDVSIVEHLKHPVYITEGS--YTNIKVTTPDDLLIAERILNLS 210 (214)
Q Consensus 145 ~p~~f~~~~l~~~~~~~~----~~~~~~~d~~~~~~~~g~~i~~v~~~--~~~~~Idtp~Dl~~a~~~~~~~ 210 (214)
.-+.|+.+.+..+++... ..++++++....+...|.++..+... ..+++||||+||..++.++..+
T Consensus 175 GiY~f~~~~l~~ll~~l~~~~~~~e~~ltd~i~~~~~~g~~v~~~~~~~~~~~~~I~tp~dl~~a~~~l~~~ 246 (456)
T PRK14356 175 GIYYLRLDAVESLLPRLTNANKSGEYYITDLVGLAVAEGMNVLGVNCGEDPNLLGVNTPAELVRSEELLRAR 246 (456)
T ss_pred EEEEEEHHHHHHHHHhccCcccCCcEEHHHHHHHHHHCCCeEEEEEcCCcCeEecCcCHHHHHHHHHHHHHH
Confidence 124577766555444321 12356777666666778888876643 3679999999999999988754
|
|
| >PRK05450 3-deoxy-manno-octulosonate cytidylyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.83 E-value=9.6e-19 Score=138.75 Aligned_cols=202 Identities=15% Similarity=0.185 Sum_probs=125.3
Q ss_pred CCCCC--CceeeeeCCeehHHHHHHHHhcCCCcCeEEEEeCCCchHHHHHHHHhcCCcEEEecCC-ccHHHHHHHHHhhc
Q 028081 1 MGANM--PKQYLPLLGQPIALYSFYTFSRMVEVKEIVVVCDPSYSDIFEETKEKINVDLKFSLPG-KERQDSVYSGLQEV 77 (214)
Q Consensus 1 m~~~~--~K~l~~l~gkpli~~~i~~~~~~~~~~~iiVv~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~sv~~al~~~ 77 (214)
|+|.+ +|+|++++|||||+|+++++.++ .+++|+|+++++ .+.+.+..++..+.+.... .....++..++..+
T Consensus 11 g~S~R~~~K~Ll~i~Gkpll~~~l~~l~~~-~i~~ivvv~~~~---~i~~~~~~~~~~v~~~~~~~~~gt~~~~~~~~~~ 86 (245)
T PRK05450 11 YASTRLPGKPLADIGGKPMIVRVYERASKA-GADRVVVATDDE---RIADAVEAFGGEVVMTSPDHPSGTDRIAEAAAKL 86 (245)
T ss_pred CCCCCCCCCcccccCCcCHHHHHHHHHHhc-CCCeEEEECCcH---HHHHHHHHcCCEEEECCCcCCCchHHHHHHHHhc
Confidence 34554 59999999999999999999988 589999998753 3455555566554433211 11123344444444
Q ss_pred c-cCCCeEEEEcCCCCCCCHHHHHHHHHHHHhc--CCeEEeeeccc------c--EE-EecCCCceeeec-----Ccc--
Q 028081 78 D-FNSELVCIHDSARPLVLSKDVQKVLMDALRV--GAAVLGVPAKA------T--IK-EANSESFVVRTL-----DRK-- 138 (214)
Q Consensus 78 ~-~~~~~vl~~~~d~P~v~~~~i~~~i~~~~~~--~~~i~~~~~~~------~--~~-~~~~~g~v~~~~-----~r~-- 138 (214)
. .+.+.+++++||+||+++++++++++.+... +.++++.+..+ + .. .++++|.+.... +..
T Consensus 87 ~~~~~~~vlv~~~D~Pli~~~~l~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~d~~g~v~~~~e~~~~~~~~~ 166 (245)
T PRK05450 87 GLADDDIVVNVQGDEPLIPPEIIDQVAEPLANPEADMATLAVPIHDAEEAFNPNVVKVVLDADGRALYFSRAPIPYGRDA 166 (245)
T ss_pred CCCCCCEEEEecCCCCCCCHHHHHHHHHHHhcCCCCeEeeeeecCCHHHhcCcCCCEEEeCCCCcEEEecCCCCCCCCCc
Confidence 2 1357899999999999999999999987654 33444454422 1 11 135556654321 100
Q ss_pred ------chhhhc-CCcccChHHHHHHHHHHHhcCCCCCcHHHH--HHhCCCCeEEEecC-CCCcccCCHHHHHHHHHHh
Q 028081 139 ------TLWEMQ-TPQVIKPDLLKKGFELVNREGLEVTDDVSI--VEHLKHPVYITEGS-YTNIKVTTPDDLLIAERIL 207 (214)
Q Consensus 139 ------~~~~~~-~p~~f~~~~l~~~~~~~~~~~~~~~d~~~~--~~~~g~~i~~v~~~-~~~~~Idtp~Dl~~a~~~~ 207 (214)
...... .-+.|..+.+..+... ....++.++.... +...|.+|+.+..+ ..|++||||+||..|++.+
T Consensus 167 ~~~~~~~~~~~~~Giy~~~~~~l~~~~~~-~~~~~~~~~~~~~~~~~~~g~~v~~~~~~~~~w~~i~~~~dl~~a~~~~ 244 (245)
T PRK05450 167 FADSAPTPVYRHIGIYAYRRGFLRRFVSL-PPSPLEKIESLEQLRALENGYRIHVVVVEEAPSIGVDTPEDLERVRALL 244 (245)
T ss_pred cccccCccccEEEEEEecCHHHHHHHHhC-CCCccccchhHHHHHHHHCCCceEEEEeCCCCCCCcCCHHHHHHHHHHh
Confidence 011111 2477887766554332 1122333443321 33578889887665 4899999999999999765
|
|
| >PRK14354 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.82 E-value=1e-18 Score=150.47 Aligned_cols=204 Identities=15% Similarity=0.155 Sum_probs=138.0
Q ss_pred CCCCCCceeeeeCCeehHHHHHHHHhcCCCcCeEEEEeCCCchHHHHHHHHhcCCcEEEe--cCCccHHHHHHHHHhhcc
Q 028081 1 MGANMPKQYLPLLGQPIALYSFYTFSRMVEVKEIVVVCDPSYSDIFEETKEKINVDLKFS--LPGKERQDSVYSGLQEVD 78 (214)
Q Consensus 1 m~~~~~K~l~~l~gkpli~~~i~~~~~~~~~~~iiVv~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~sv~~al~~~~ 78 (214)
|+..+||+|++++|||||+|+++++.+++ +++++|++++.. +.+.+.+.. .+.++ ....+..+++++++..++
T Consensus 16 l~~~~pK~ll~i~Gkpli~~~l~~l~~~g-i~~iivvv~~~~-~~i~~~~~~---~~~~~~~~~~~g~~~al~~a~~~l~ 90 (458)
T PRK14354 16 MKSKLPKVLHKVCGKPMVEHVVDSVKKAG-IDKIVTVVGHGA-EEVKEVLGD---RSEFALQEEQLGTGHAVMQAEEFLA 90 (458)
T ss_pred cCCCCChhhCEeCCccHHHHHHHHHHhCC-CCeEEEEeCCCH-HHHHHHhcC---CcEEEEcCCCCCHHHHHHHHHHHhc
Confidence 44568999999999999999999999875 899999888775 445544322 12222 122334788999998885
Q ss_pred cCCCeEEEEcCCCCCCCHHHHHHHHHHHHhcCC--eEEeeeccccE----EEecCCCceeeecCccc-------hhhhcC
Q 028081 79 FNSELVCIHDSARPLVLSKDVQKVLMDALRVGA--AVLGVPAKATI----KEANSESFVVRTLDRKT-------LWEMQT 145 (214)
Q Consensus 79 ~~~~~vl~~~~d~P~v~~~~i~~~i~~~~~~~~--~i~~~~~~~~~----~~~~~~g~v~~~~~r~~-------~~~~~~ 145 (214)
...+.+++++||+||+++++++++++.++..++ .+.+.+..++. ...+++|.+..+.++.. .+..++
T Consensus 91 ~~~d~vlv~~~D~p~i~~~~l~~li~~~~~~~~~~t~~~~~~~~~~~~g~v~~d~~~~V~~~~ek~~~~~~~~~~~~~~~ 170 (458)
T PRK14354 91 DKEGTTLVICGDTPLITAETLKNLIDFHEEHKAAATILTAIAENPTGYGRIIRNENGEVEKIVEQKDATEEEKQIKEINT 170 (458)
T ss_pred ccCCeEEEEECCccccCHHHHHHHHHHHHhcCCceEEEEEEcCCCCCceEEEEcCCCCEEEEEECCCCChHHhcCcEEEE
Confidence 324679999999999999999999998865443 33334444431 11244556655543321 123343
Q ss_pred -CcccChHHHHHHHHHHHh----cCCCCCcHHHHHHhCCCCeEEEecC--CCCcccCCHHHHHHHHHHhhc
Q 028081 146 -PQVIKPDLLKKGFELVNR----EGLEVTDDVSIVEHLKHPVYITEGS--YTNIKVTTPDDLLIAERILNL 209 (214)
Q Consensus 146 -p~~f~~~~l~~~~~~~~~----~~~~~~d~~~~~~~~g~~i~~v~~~--~~~~~Idtp~Dl~~a~~~~~~ 209 (214)
++.|+.+.|.+++..... ..+++++....+.+.|.++..+..+ ..+++||+++||..|+.+++.
T Consensus 171 Giy~f~~~~l~~~l~~~~~~~~~~~~~~~d~~~~l~~~g~~v~~~~~~g~~~~i~i~~~~Dl~~a~~ll~~ 241 (458)
T PRK14354 171 GTYCFDNKALFEALKKISNDNAQGEYYLTDVIEILKNEGEKVGAYQTEDFEESLGVNDRVALAEAEKVMRR 241 (458)
T ss_pred EEEEEEHHHHHHHHHHhCccccCCcEeHHHHHHHHHHCCCeEEEEecCCcceEEccCCHHHHHHHHHHHHH
Confidence 588988777666654322 1245666666666777788776543 578999999999999987653
|
|
| >PRK14353 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.82 E-value=8.3e-19 Score=150.51 Aligned_cols=208 Identities=15% Similarity=0.130 Sum_probs=138.7
Q ss_pred CCCCCCceeeeeCCeehHHHHHHHHhcCCCcCeEEEEeCCCchHHHHHHHHhcCCcEEE-ec-CCccHHHHHHHHHhhcc
Q 028081 1 MGANMPKQYLPLLGQPIALYSFYTFSRMVEVKEIVVVCDPSYSDIFEETKEKINVDLKF-SL-PGKERQDSVYSGLQEVD 78 (214)
Q Consensus 1 m~~~~~K~l~~l~gkpli~~~i~~~~~~~~~~~iiVv~~~~~~~~~~~~~~~~~~~~~~-~~-~~~~~~~sv~~al~~~~ 78 (214)
|++..||+|++++|||||+|+++++..++ +++|+|++++.. +.+.+.+..++..+.+ .. ...+..++++.++..+.
T Consensus 19 ~~~~~pK~ll~v~gkpli~~~l~~l~~~g-i~~ivvv~~~~~-~~i~~~~~~~~~~~~~~~~~~~~G~~~sl~~a~~~l~ 96 (446)
T PRK14353 19 MKSSLPKVLHPVAGRPMLAHVLAAAASLG-PSRVAVVVGPGA-EAVAAAAAKIAPDAEIFVQKERLGTAHAVLAAREALA 96 (446)
T ss_pred cCCCCCcccCEECCchHHHHHHHHHHhCC-CCcEEEEECCCH-HHHHHHhhccCCCceEEEcCCCCCcHHHHHHHHHHHh
Confidence 45567999999999999999999999885 899999998875 4556655544323222 22 22234788888888774
Q ss_pred cCCCeEEEEcCCCCCCCHHHHHHHHHHHHh-cCCeEEeeeccccEEE---ecCCCceeeecCccch-------hhhc-CC
Q 028081 79 FNSELVCIHDSARPLVLSKDVQKVLMDALR-VGAAVLGVPAKATIKE---ANSESFVVRTLDRKTL-------WEMQ-TP 146 (214)
Q Consensus 79 ~~~~~vl~~~~d~P~v~~~~i~~~i~~~~~-~~~~i~~~~~~~~~~~---~~~~g~v~~~~~r~~~-------~~~~-~p 146 (214)
...+.+++++||+||++++.++.+++.... .+.++.+.+..++..+ ..++|.+..+.++... .... .-
T Consensus 97 ~~~~~~lv~~~D~P~i~~~~l~~l~~~~~~~~~~~i~~~~~~~~~~~g~~~~~~g~v~~~~ek~~~~~~~~~~~~~~~Gi 176 (446)
T PRK14353 97 GGYGDVLVLYGDTPLITAETLARLRERLADGADVVVLGFRAADPTGYGRLIVKGGRLVAIVEEKDASDEERAITLCNSGV 176 (446)
T ss_pred ccCCCEEEEeCCcccCCHHHHHHHHHhHhcCCcEEEEEEEeCCCCcceEEEECCCeEEEEEECCCCChHHhhceEEEEEE
Confidence 224668899999999999999999985543 3445666666554211 1134555544321100 0000 12
Q ss_pred cccChHHHHHHHHHHHh----cCCCCCcHHHHHHhCCCCeEEEecCC-CCcccCCHHHHHHHHHHhhcc
Q 028081 147 QVIKPDLLKKGFELVNR----EGLEVTDDVSIVEHLKHPVYITEGSY-TNIKVTTPDDLLIAERILNLS 210 (214)
Q Consensus 147 ~~f~~~~l~~~~~~~~~----~~~~~~d~~~~~~~~g~~i~~v~~~~-~~~~Idtp~Dl~~a~~~~~~~ 210 (214)
+.|+...+.++++.... ..+++++....+.+.|.++..+..+. .+.+||||+||..|+.+++.+
T Consensus 177 y~~~~~~l~~~l~~~~~~~~~~~~~~~d~~~~l~~~g~~v~~~~~~~~~~~~I~t~~dl~~a~~~~~~~ 245 (446)
T PRK14353 177 MAADGADALALLDRVGNDNAKGEYYLTDIVAIARAEGLRVAVVEAPEDEVRGINSRAELAEAEAVWQAR 245 (446)
T ss_pred EEEEHHHHHHHHHhhcccCCCCcEeHHHHHHHHHHCCCeEEEEecChhhcccCCCHHHHHHHHHHHHHH
Confidence 46666666566554321 22566777777778888899887754 567999999999999877643
|
|
| >TIGR01173 glmU UDP-N-acetylglucosamine diphosphorylase/glucosamine-1-phosphate N-acetyltransferase | Back alignment and domain information |
|---|
Probab=99.80 E-value=4.3e-18 Score=146.26 Aligned_cols=206 Identities=17% Similarity=0.149 Sum_probs=139.0
Q ss_pred CCCCCCceeeeeCCeehHHHHHHHHhcCCCcCeEEEEeCCCchHHHHHHHHhcCCcEEEecCCccHHHHHHHHHhhcccC
Q 028081 1 MGANMPKQYLPLLGQPIALYSFYTFSRMVEVKEIVVVCDPSYSDIFEETKEKINVDLKFSLPGKERQDSVYSGLQEVDFN 80 (214)
Q Consensus 1 m~~~~~K~l~~l~gkpli~~~i~~~~~~~~~~~iiVv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sv~~al~~~~~~ 80 (214)
|+..+||+|++++|+|||.|+++++.++. +++++|+++++. +.+++.+..++..+..-....+..+++++|+..++.
T Consensus 14 ~~~~~pK~l~~i~gkpli~~~l~~l~~~g-~~~iiiv~~~~~-~~i~~~~~~~~i~~~~~~~~~G~~~ai~~a~~~l~~- 90 (451)
T TIGR01173 14 MKSDLPKVLHPLAGKPMLEHVIDAARALG-PQKIHVVYGHGA-EQVRKALANRDVNWVLQAEQLGTGHAVLQALPFLPD- 90 (451)
T ss_pred cCCCCchhhceeCCccHHHHHHHHHHhCC-CCeEEEEECCCH-HHHHHHhcCCCcEEEEcCCCCchHHHHHHHHHhcCC-
Confidence 45567999999999999999999999885 789999988775 456666655543332211122357889999988852
Q ss_pred CCeEEEEcCCCCCCCHHHHHHHHHHHHhcCCeEEeeeccccE----EEecCCCceeeecCccch-------hhhc-CCcc
Q 028081 81 SELVCIHDSARPLVLSKDVQKVLMDALRVGAAVLGVPAKATI----KEANSESFVVRTLDRKTL-------WEMQ-TPQV 148 (214)
Q Consensus 81 ~~~vl~~~~d~P~v~~~~i~~~i~~~~~~~~~i~~~~~~~~~----~~~~~~g~v~~~~~r~~~-------~~~~-~p~~ 148 (214)
.+.+++++||+||++++.++++++.+.+.+.++.+.+..++. ...+++|.+..+.++... .... ..+.
T Consensus 91 ~~~~lv~~~D~p~i~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~g~v~~d~~g~v~~~~ek~~~~~~~~~~~~~~~G~y~ 170 (451)
T TIGR01173 91 DGDVLVLYGDVPLISAETLERLLEAHRQNGITLLTAKLPDPTGYGRIIRENDGKVTAIVEDKDANAEQKAIKEINTGVYV 170 (451)
T ss_pred CCcEEEEECCcCCcCHHHHHHHHHHHhhCCEEEEEEecCCCCCCCEEEEcCCCCEEEEEEcCCCChHHhcCcEEEEEEEE
Confidence 367899999999999999999998876555445555554431 123445666555433211 1111 2478
Q ss_pred cChHHHHHHHHHHHh----cCCCCCcHHHHHHhCCCCeEEEecC--CCCcccCCHHHHHHHHHHhhc
Q 028081 149 IKPDLLKKGFELVNR----EGLEVTDDVSIVEHLKHPVYITEGS--YTNIKVTTPDDLLIAERILNL 209 (214)
Q Consensus 149 f~~~~l~~~~~~~~~----~~~~~~d~~~~~~~~g~~i~~v~~~--~~~~~Idtp~Dl~~a~~~~~~ 209 (214)
|+.+.|.+++..... .++++++....+...|.++..++.+ ..+++++||+|+..++.++..
T Consensus 171 ~~~~~l~~~l~~~~~~~~~~e~~~~~~~~~l~~~g~~v~~~~~~~~~~~~~i~t~~dl~~~~~~l~~ 237 (451)
T TIGR01173 171 FDGAALKRWLPKLSNNNAQGEYYLTDVIALAVADGETVRAVQVDDSDEVLGVNDRLQLAQLERILQR 237 (451)
T ss_pred EeHHHHHHHHHhcccccccCcEeHHHHHHHHHHCCCeEEEEEcCChhheecCCCHHHHHHHHHHHHH
Confidence 888776665544321 1244565555566677888877644 358999999999998777654
|
This protein is a bifunctional enzyme, GlmU, which catalyzes last two reactions in the four-step pathway of UDP-N-acetylglucosamine biosynthesis from fructose-6-phosphate. Its reaction product is required from peptidoglycan biosynthesis, LPS biosynthesis in species with LPS, and certain other processes. |
| >cd04182 GT_2_like_f GT_2_like_f is a subfamily of the glycosyltransferase family 2 (GT-2) with unknown function | Back alignment and domain information |
|---|
Probab=99.80 E-value=4.2e-18 Score=129.21 Aligned_cols=168 Identities=18% Similarity=0.218 Sum_probs=107.6
Q ss_pred CceeeeeCCeehHHHHHHHHhcCCCcCeEEEEeCCCchHHHHHHHHhcCCcEEEec-CCccHHHHHHHHHhhcccCCCeE
Q 028081 6 PKQYLPLLGQPIALYSFYTFSRMVEVKEIVVVCDPSYSDIFEETKEKINVDLKFSL-PGKERQDSVYSGLQEVDFNSELV 84 (214)
Q Consensus 6 ~K~l~~l~gkpli~~~i~~~~~~~~~~~iiVv~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~sv~~al~~~~~~~~~v 84 (214)
||+|++++|||||+|+++++..++ +++|+|++++... .....+..++..+.... .+.++.+++..|++++....+++
T Consensus 17 ~K~l~~~~g~~li~~~i~~l~~~~-~~~i~vv~~~~~~-~~~~~~~~~~~~~~~~~~~~~G~~~~i~~al~~~~~~~~~v 94 (186)
T cd04182 17 NKLLLPLDGKPLLRHALDAALAAG-LSRVIVVLGAEAD-AVRAALAGLPVVVVINPDWEEGMSSSLAAGLEALPADADAV 94 (186)
T ss_pred CceeCeeCCeeHHHHHHHHHHhCC-CCcEEEECCCcHH-HHHHHhcCCCeEEEeCCChhhCHHHHHHHHHHhccccCCEE
Confidence 899999999999999999999873 7999999987652 23333333332211111 12456899999999875336889
Q ss_pred EEEcCCCCCCCHHHHHHHHHHHHhcCCeEEeeeccccEEEecCCCceeeecCccchhhhcCCcccChHHHHHHHHHHHhc
Q 028081 85 CIHDSARPLVLSKDVQKVLMDALRVGAAVLGVPAKATIKEANSESFVVRTLDRKTLWEMQTPQVIKPDLLKKGFELVNRE 164 (214)
Q Consensus 85 l~~~~d~P~v~~~~i~~~i~~~~~~~~~i~~~~~~~~~~~~~~~g~v~~~~~r~~~~~~~~p~~f~~~~l~~~~~~~~~~ 164 (214)
+++.||+||++++.++++++.+......+ +.+..+ ++. ..|-.|++..+..+.+..
T Consensus 95 lv~~~D~P~i~~~~i~~l~~~~~~~~~~~-v~~~~~-------g~~-------------~~P~~~~~~~~~~l~~~~--- 150 (186)
T cd04182 95 LILLADQPLVTAETLRALIDAFREDGAGI-VAPVYQ-------GRR-------------GHPVLFPRSLFPELLALS--- 150 (186)
T ss_pred EEEeCCCCCCCHHHHHHHHHHHHhCCCeE-EEEecC-------Ccc-------------CCCeeECHHHHHHHHccC---
Confidence 99999999999999999998876433322 233221 110 035567766554432211
Q ss_pred CCCCCcHHHHHHhCCCCeE-EEecCCCCcccCCHHHHH
Q 028081 165 GLEVTDDVSIVEHLKHPVY-ITEGSYTNIKVTTPDDLL 201 (214)
Q Consensus 165 ~~~~~d~~~~~~~~g~~i~-~v~~~~~~~~Idtp~Dl~ 201 (214)
| -.....++...+.... .+..+...++||||+||+
T Consensus 151 g--~~g~~~~~~~~~~~~~~~~~~~~~~~nint~~d~~ 186 (186)
T cd04182 151 G--DKGARSLLRAHPDRVVVEVDDPGVLIDIDTPEDLR 186 (186)
T ss_pred C--ChhHHHHHHhCcccEEEEeCCCCcccCCCCHHHhC
Confidence 1 1122345555554432 233345578999999984
|
GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families. |
| >PRK14359 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.80 E-value=3.3e-18 Score=146.12 Aligned_cols=201 Identities=15% Similarity=0.174 Sum_probs=131.9
Q ss_pred CCCCCCceeeeeCCeehHHHHHHHHhcCCCcCeEEEEeCCCchHHHHHHHHhcCCcEEEecCC----ccHHHHHHHHHhh
Q 028081 1 MGANMPKQYLPLLGQPIALYSFYTFSRMVEVKEIVVVCDPSYSDIFEETKEKINVDLKFSLPG----KERQDSVYSGLQE 76 (214)
Q Consensus 1 m~~~~~K~l~~l~gkpli~~~i~~~~~~~~~~~iiVv~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~sv~~al~~ 76 (214)
|+.++||+|++++|+|||+|+++.+.+. +++|+|++++.. +.+++.+.++...+.++... .+..+++..
T Consensus 16 l~~~~pK~Llpi~gkPli~~~i~~l~~~--~~~i~Ivv~~~~-~~i~~~~~~~~~~v~~~~~~~~~~~gt~~al~~---- 88 (430)
T PRK14359 16 MKSSLPKVLHTICGKPMLFYILKEAFAI--SDDVHVVLHHQK-ERIKEAVLEYFPGVIFHTQDLENYPGTGGALMG---- 88 (430)
T ss_pred CCCCCCceeCEECCccHHHHHHHHHHHc--CCcEEEEECCCH-HHHHHHHHhcCCceEEEEecCccCCCcHHHHhh----
Confidence 4557899999999999999999999875 588999988875 55666665543234443211 112344433
Q ss_pred cccCCCeEEEEcCCCCCCCHHHHHHHHHHHHhcCCeEEeeeccccE--EEe-cCCCceeeecCccch-------hhhc-C
Q 028081 77 VDFNSELVCIHDSARPLVLSKDVQKVLMDALRVGAAVLGVPAKATI--KEA-NSESFVVRTLDRKTL-------WEMQ-T 145 (214)
Q Consensus 77 ~~~~~~~vl~~~~d~P~v~~~~i~~~i~~~~~~~~~i~~~~~~~~~--~~~-~~~g~v~~~~~r~~~-------~~~~-~ 145 (214)
+....+.+++++||+||++++.++++++. ..+..+++.++.++. ..+ .++|.+..+.++... +... .
T Consensus 89 ~~~~~d~vlv~~gD~p~~~~~~l~~l~~~--~~~~~v~~~~~~~~~~~g~v~~d~g~v~~i~e~~~~~~~~~~~~~~~~G 166 (430)
T PRK14359 89 IEPKHERVLILNGDMPLVEKDELEKLLEN--DADIVMSVFHLADPKGYGRVVIENGQVKKIVEQKDANEEELKIKSVNAG 166 (430)
T ss_pred cccCCCeEEEEECCccCCCHHHHHHHHhC--CCCEEEEEEEcCCCccCcEEEEcCCeEEEEEECCCCCcccccceEEEeE
Confidence 22225789999999999999999887642 223445555665542 111 124566554432211 1111 2
Q ss_pred CcccChHHHHHHHHHHHh----cCCCCCcHHHHHHhCCCCeEEEecC-CCCcccCCHHHHHHHHHHhhcc
Q 028081 146 PQVIKPDLLKKGFELVNR----EGLEVTDDVSIVEHLKHPVYITEGS-YTNIKVTTPDDLLIAERILNLS 210 (214)
Q Consensus 146 p~~f~~~~l~~~~~~~~~----~~~~~~d~~~~~~~~g~~i~~v~~~-~~~~~Idtp~Dl~~a~~~~~~~ 210 (214)
.+.|+...|..+...... .+++++|....+.+.|.++..+..+ ..+++||||+||..|+.++..+
T Consensus 167 iyif~~~~l~~~~~~~~~~~~~~e~~l~d~i~~l~~~g~~v~~~~~~~~~w~dI~t~~dl~~a~~~l~~~ 236 (430)
T PRK14359 167 VYLFDRKLLEEYLPLLKNQNAQKEYYLTDIIALAIEKGETIKAVFVDEENFMGVNSKFELAKAEEIMQER 236 (430)
T ss_pred EEEEEHHHHHHHHHhcCcccccCceehhhHHHHHHHcCCeEEEEEcCCCEEeCCCCHHHHHHHHHHHHHH
Confidence 478888877765543221 2367888777777788889887765 4688999999999999888654
|
|
| >PRK14360 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.79 E-value=4.1e-18 Score=146.41 Aligned_cols=204 Identities=15% Similarity=0.130 Sum_probs=135.3
Q ss_pred CCCCCCceeeeeCCeehHHHHHHHHhcCCCcCeEEEEeCCCchHHHHHHHHhcCCcEEEecC--CccHHHHHHHHHhhcc
Q 028081 1 MGANMPKQYLPLLGQPIALYSFYTFSRMVEVKEIVVVCDPSYSDIFEETKEKINVDLKFSLP--GKERQDSVYSGLQEVD 78 (214)
Q Consensus 1 m~~~~~K~l~~l~gkpli~~~i~~~~~~~~~~~iiVv~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~sv~~al~~~~ 78 (214)
|+.++||+|++++|||||+|+++++.+++ +++++|++++.. +.+.+.+..++ .+.++.. ..+..++++.++..+.
T Consensus 15 ~~~~~pK~ll~v~gkpli~~~l~~l~~~g-~~~iivvv~~~~-~~i~~~~~~~~-~i~~v~~~~~~G~~~sv~~~~~~l~ 91 (450)
T PRK14360 15 MKSSLPKVLHPLGGKSLVERVLDSCEELK-PDRRLVIVGHQA-EEVEQSLAHLP-GLEFVEQQPQLGTGHAVQQLLPVLK 91 (450)
T ss_pred CCCCCChhcCEECChhHHHHHHHHHHhCC-CCeEEEEECCCH-HHHHHHhcccC-CeEEEEeCCcCCcHHHHHHHHHHhh
Confidence 55668999999999999999999999885 788888888764 44555554432 2334321 1223678888888775
Q ss_pred cCCCeEEEEcCCCCCCCHHHHHHHHHHHHhcCCeE--EeeeccccEE----EecCCCceeeecCccchhhhc--------
Q 028081 79 FNSELVCIHDSARPLVLSKDVQKVLMDALRVGAAV--LGVPAKATIK----EANSESFVVRTLDRKTLWEMQ-------- 144 (214)
Q Consensus 79 ~~~~~vl~~~~d~P~v~~~~i~~~i~~~~~~~~~i--~~~~~~~~~~----~~~~~g~v~~~~~r~~~~~~~-------- 144 (214)
...+.+++++||+||++++.++++++.+...++.+ ...+..++.. ..+++|.+..+.++..+...+
T Consensus 92 ~~~~~vlV~~~D~P~i~~~~l~~ll~~~~~~~~~~~~~~~~~~~~~~~g~~~~d~~g~v~~~~ek~~~~~~~~~~~~~~~ 171 (450)
T PRK14360 92 GFEGDLLVLNGDVPLLRPETLEALLNTHRSSNADVTLLTARLPNPKGYGRVFCDGNNLVEQIVEDRDCTPAQRQNNRINA 171 (450)
T ss_pred ccCCcEEEEeCCccccCHHHHHHHHHHHHhcCCcEEEEEEecCCCCCccEEEECCCCCEEEEEECCCCChhHhcCcEEEE
Confidence 32356889999999999999999999887655433 2334444421 234456676665543322222
Q ss_pred CCcccChHHHHHHHHHHHh----cCCCCCcHHHHHHhCCCCeEEEecCCCCcccCCHHHHHHHHHHhhc
Q 028081 145 TPQVIKPDLLKKGFELVNR----EGLEVTDDVSIVEHLKHPVYITEGSYTNIKVTTPDDLLIAERILNL 209 (214)
Q Consensus 145 ~p~~f~~~~l~~~~~~~~~----~~~~~~d~~~~~~~~g~~i~~v~~~~~~~~Idtp~Dl~~a~~~~~~ 209 (214)
..|.|+.+.|.+++..... .+++++|....+...+ -.-+.+...+++||+|+|+..++.+++.
T Consensus 172 Giy~f~~~~l~~~~~~~~~~~~~~e~~~td~i~~~~~~~--~~~v~~~~~~~~i~~~~dl~~~~~~l~~ 238 (450)
T PRK14360 172 GIYCFNWPALAEVLPKLSSNNDQKEYYLTDTVSLLDPVM--AVEVEDYQEINGINDRKQLAQCEEILQN 238 (450)
T ss_pred EEEEEEHHHHHHHHhhccccccCCceeHHHHHHHHhhce--EEecCCHHHhhcCCCHHHHHHHHHHHHH
Confidence 2478888777777654322 2256777655553210 0113444568999999999999998764
|
|
| >cd02518 GT2_SpsF SpsF is a glycosyltrnasferase implicated in the synthesis of the spore coat | Back alignment and domain information |
|---|
Probab=99.79 E-value=1.7e-17 Score=130.75 Aligned_cols=179 Identities=20% Similarity=0.235 Sum_probs=107.2
Q ss_pred CceeeeeCCeehHHHHHHHHhcCCCcCeEEEEeCCCch-HHHHHHHHhcCCcEEEecCCccH-HHHHHHHHhhcccCCCe
Q 028081 6 PKQYLPLLGQPIALYSFYTFSRMVEVKEIVVVCDPSYS-DIFEETKEKINVDLKFSLPGKER-QDSVYSGLQEVDFNSEL 83 (214)
Q Consensus 6 ~K~l~~l~gkpli~~~i~~~~~~~~~~~iiVv~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~-~~sv~~al~~~~~~~~~ 83 (214)
+|+|++++|+|||+|+++++.+++.+++|+|+++.+.. +.+.+.+..++ +.++.++... ......++... +.++
T Consensus 15 ~K~ll~l~Gkpli~~~i~~l~~~~~~~~ivVv~~~~~~~~~i~~~~~~~~--v~~v~~~~~~~l~~~~~~~~~~--~~d~ 90 (233)
T cd02518 15 GKVLKPLGGKPLLEHLLDRLKRSKLIDEIVIATSTNEEDDPLEALAKKLG--VKVFRGSEEDVLGRYYQAAEEY--NADV 90 (233)
T ss_pred CCcccccCCccHHHHHHHHHHhCCCCCeEEEECCCCcccHHHHHHHHHcC--CeEEECCchhHHHHHHHHHHHc--CCCE
Confidence 59999999999999999999987658999999987641 23445554444 3344444332 22222233222 3689
Q ss_pred EEEEcCCCCCCCHHHHHHHHHHHHhcCCeEEeeeccccEEEecCCCceeeecCccchhhhcCCcccChHHHHHHHHHHHh
Q 028081 84 VCIHDSARPLVLSKDVQKVLMDALRVGAAVLGVPAKATIKEANSESFVVRTLDRKTLWEMQTPQVIKPDLLKKGFELVNR 163 (214)
Q Consensus 84 vl~~~~d~P~v~~~~i~~~i~~~~~~~~~i~~~~~~~~~~~~~~~g~v~~~~~r~~~~~~~~p~~f~~~~l~~~~~~~~~ 163 (214)
+++++||+||+++++++++++.+...+..+.+... . .|. .....+..|....+.++....+.
T Consensus 91 vli~~~D~P~i~~~~i~~li~~~~~~~~~~~~~~~-------~-~g~----------Pv~~~~~~~~~~~~~~l~~~~gd 152 (233)
T cd02518 91 VVRITGDCPLIDPEIIDAVIRLFLKSGADYTSNTL-------P-RTY----------PDGLDVEVFTRDALERAAAEADD 152 (233)
T ss_pred EEEeCCCCCCCCHHHHHHHHHHHHhCCCCEEecCC-------C-CCC----------CCceEEEEEEHHHHHHHHHhCCC
Confidence 99999999999999999999987654333322100 0 110 00001225555555555443222
Q ss_pred cCCCCCcHH-HHHHhCCCCeEE--EecCC-----CCcccCCHHHHHHHHHHhh
Q 028081 164 EGLEVTDDV-SIVEHLKHPVYI--TEGSY-----TNIKVTTPDDLLIAERILN 208 (214)
Q Consensus 164 ~~~~~~d~~-~~~~~~g~~i~~--v~~~~-----~~~~Idtp~Dl~~a~~~~~ 208 (214)
.|. .+.. ..++++...+.. +..+. ..+|||||+||..++.+++
T Consensus 153 ~g~--r~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~DiDt~eD~~~~~~~~~ 203 (233)
T cd02518 153 PYE--REHVTPYIRRHPELFRIGYLEAPPDRLSDLRLTVDTPEDFELIKEIYE 203 (233)
T ss_pred hhh--hcCCCHHHHhChHHeEEeeecCCcccCcCceEecCCHHHHHHHHHHHH
Confidence 221 0000 123444434444 33322 2689999999999998876
|
Spore coat polysaccharide biosynthesis protein F (spsF) is a glycosyltransferase implicated in the synthesis of the spore coat in a variety of bacteria challenged by stress as starvation. The spsF gene is expressed in the late stage of coat development responsible for a terminal step in coat formation that involves the glycosylation of the coat. SpsF gene mutation resulted in spores that appeared normal. But, the spores tended to aggregate and had abnormal adsorption properties, indicating a surface alteration. |
| >TIGR03202 pucB xanthine dehydrogenase accessory protein pucB | Back alignment and domain information |
|---|
Probab=99.78 E-value=1.4e-17 Score=127.23 Aligned_cols=171 Identities=16% Similarity=0.184 Sum_probs=105.8
Q ss_pred CCCCCCceeeeeCCeehHHHHHHHHhcCCCcCeEEEEeCCCchH--HHHHHH-HhcCCcEEEecCC-ccHHHHHHHHHhh
Q 028081 1 MGANMPKQYLPLLGQPIALYSFYTFSRMVEVKEIVVVCDPSYSD--IFEETK-EKINVDLKFSLPG-KERQDSVYSGLQE 76 (214)
Q Consensus 1 m~~~~~K~l~~l~gkpli~~~i~~~~~~~~~~~iiVv~~~~~~~--~~~~~~-~~~~~~~~~~~~~-~~~~~sv~~al~~ 76 (214)
||+ +|+|++++|+|||+|+++.+.+.. +++|+||++++... .+.+.. ...+..+....+. .++.+|+..|+++
T Consensus 14 mg~--~K~ll~~~g~~ll~~~i~~~~~~~-~~~i~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~si~~gl~~ 90 (190)
T TIGR03202 14 MGE--NKLALPLGETTLGSASLKTALSSR-LSKVIVVIGEKYAHLSWLDPYLLADERIMLVCCRDACEGQAHSLKCGLRK 90 (190)
T ss_pred CCC--CceeceeCCccHHHHHHHHHHhCC-CCcEEEEeCCccchhhhhhHhhhcCCCeEEEECCChhhhHHHHHHHHHHH
Confidence 554 899999999999999998877664 89999999876421 111111 1112222223332 2468999999998
Q ss_pred cc-cCCCeEEEEcCCCCCCCHHHHHHHHHHHHhcCCeEEeeeccccEEEecCCCceeeecCccchhhhcCCcccChHHHH
Q 028081 77 VD-FNSELVCIHDSARPLVLSKDVQKVLMDALRVGAAVLGVPAKATIKEANSESFVVRTLDRKTLWEMQTPQVIKPDLLK 155 (214)
Q Consensus 77 ~~-~~~~~vl~~~~d~P~v~~~~i~~~i~~~~~~~~~i~~~~~~~~~~~~~~~g~v~~~~~r~~~~~~~~p~~f~~~~l~ 155 (214)
+. .+.+++++++||+||+++++++++++.+..+...+.+ +.. +|. ...|-.|+...+.
T Consensus 91 ~~~~~~d~vlv~~~D~P~v~~~~i~~L~~~~~~~~~~~~~-~~~--------~g~------------~~~p~~~~~~~~~ 149 (190)
T TIGR03202 91 AEAMGADAVVILLADQPFLTADVINALLALAKRRPDDYVA-ASF--------KGK------------PRPPILFSKSLFP 149 (190)
T ss_pred hccCCCCeEEEEeCCCCCCCHHHHHHHHHHHhhCCCCEEE-Eec--------CCC------------CCCCeEEcHHHHH
Confidence 63 2468999999999999999999999987554332221 211 121 0135567766554
Q ss_pred HHHHHHHhcCCCCCcHHHHHHhCCCCeE-EEecCCCCcccCCHHHH
Q 028081 156 KGFELVNREGLEVTDDVSIVEHLKHPVY-ITEGSYTNIKVTTPDDL 200 (214)
Q Consensus 156 ~~~~~~~~~~~~~~d~~~~~~~~g~~i~-~v~~~~~~~~Idtp~Dl 200 (214)
.+.+..+ -.+...++++.+.... .+......+|||||+||
T Consensus 150 ~l~~~~~-----~~g~~~~l~~~~~~~~~~~~~~~~~~dint~ed~ 190 (190)
T TIGR03202 150 KLKALKG-----DEGARALLRKDKSGLALPVADASAFFDIDTKEDY 190 (190)
T ss_pred HHHhCCC-----CccHHHHHhhCCcceEEecCCCccccCCCChhhC
Confidence 4322111 1233455655543222 22333456899999996
|
In Bacillus subtilis the expression of this protein, located in an operon with the structural subunits of xanthine dehydrogenase, has been found to be essential for XDH activity. Some members of this family appear to have a distant relationship to the MobA protein involved in molybdopterin biosynthesis, although this may be coincidental. |
| >PRK00317 mobA molybdopterin-guanine dinucleotide biosynthesis protein MobA; Reviewed | Back alignment and domain information |
|---|
Probab=99.78 E-value=3.6e-17 Score=125.29 Aligned_cols=169 Identities=15% Similarity=0.158 Sum_probs=105.6
Q ss_pred CCCceeeeeCCeehHHHHHHHHhcCCCcCeEEEEeCCCchHHHHHHHHhcCCcEEEe--cCCccHHHHHHHHHhhcccCC
Q 028081 4 NMPKQYLPLLGQPIALYSFYTFSRMVEVKEIVVVCDPSYSDIFEETKEKINVDLKFS--LPGKERQDSVYSGLQEVDFNS 81 (214)
Q Consensus 4 ~~~K~l~~l~gkpli~~~i~~~~~~~~~~~iiVv~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~sv~~al~~~~~~~ 81 (214)
+.||++++++|+|||+|+++.+. +.+++|+|+++.+. +.+ ...+..+... .+..++..|++.|+...+ .
T Consensus 19 ~~~K~ll~~~g~~ll~~~i~~l~--~~~~~i~vv~~~~~-~~~----~~~~~~~v~~~~~~~~g~~~~i~~~l~~~~--~ 89 (193)
T PRK00317 19 GVDKGLQELNGKPLIQHVIERLA--PQVDEIVINANRNL-ARY----AAFGLPVIPDSLADFPGPLAGILAGLKQAR--T 89 (193)
T ss_pred CCCCceeEECCEEHHHHHHHHHh--hhCCEEEEECCCCh-HHH----HhcCCcEEeCCCCCCCCCHHHHHHHHHhcC--C
Confidence 36899999999999999999998 35899999987653 222 2233332211 122456889999998654 6
Q ss_pred CeEEEEcCCCCCCCHHHHHHHHHHHHhcCCeEEeeeccccEEEecCCCceeeecCccchhhhcCCc--ccChHHHHHHHH
Q 028081 82 ELVCIHDSARPLVLSKDVQKVLMDALRVGAAVLGVPAKATIKEANSESFVVRTLDRKTLWEMQTPQ--VIKPDLLKKGFE 159 (214)
Q Consensus 82 ~~vl~~~~d~P~v~~~~i~~~i~~~~~~~~~i~~~~~~~~~~~~~~~g~v~~~~~r~~~~~~~~p~--~f~~~~l~~~~~ 159 (214)
+++++++||+||+++++++++++.+...+..+.+. .. ++.. .|- .|++..+..+.+
T Consensus 90 ~~vlv~~~D~P~i~~~~i~~l~~~~~~~~~~~~~~-~~--------~~~~-------------~Pl~~~~~~~~~~~l~~ 147 (193)
T PRK00317 90 EWVLVVPCDTPFIPPDLVARLAQAAGKDDADVAWA-HD--------GGRL-------------HPTFALYSVALLPDLEA 147 (193)
T ss_pred CeEEEEcCCcCCCCHHHHHHHHHhhhcCCCcEEEE-ee--------CCcc-------------eeEEEEEeHHHHHHHHH
Confidence 88999999999999999999999765433222211 11 1211 243 566655544332
Q ss_pred HHHhcCCCCCcHHHHHHhCCCCeEEEe-cCCCCcccCCHHHHHHHHHH
Q 028081 160 LVNREGLEVTDDVSIVEHLKHPVYITE-GSYTNIKVTTPDDLLIAERI 206 (214)
Q Consensus 160 ~~~~~~~~~~d~~~~~~~~g~~i~~v~-~~~~~~~Idtp~Dl~~a~~~ 206 (214)
.. ..|. .....+++..+.....+. .+...+|||||+||+.++..
T Consensus 148 ~l-~~g~--~~~~~~l~~~~~~~v~~~~~~~~~~dinTped~~~~~~~ 192 (193)
T PRK00317 148 YL-AAGE--RKVMAFYARHGGVAVDFSDPKDAFFNINTPEDLAQLEEL 192 (193)
T ss_pred HH-HcCC--chHHHHHHHCCcEEEeCCCCCCccCcCCCHHHHHHHHhh
Confidence 21 1221 122334555542211122 23456899999999988754
|
|
| >PRK14352 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.78 E-value=1.7e-17 Score=143.76 Aligned_cols=198 Identities=14% Similarity=0.185 Sum_probs=136.6
Q ss_pred CCCCCCceeeeeCCeehHHHHHHHHhcCCCcCeEEEEeCCCchHHHHHHHHhcCCcEEEecC--CccHHHHHHHHHhhcc
Q 028081 1 MGANMPKQYLPLLGQPIALYSFYTFSRMVEVKEIVVVCDPSYSDIFEETKEKINVDLKFSLP--GKERQDSVYSGLQEVD 78 (214)
Q Consensus 1 m~~~~~K~l~~l~gkpli~~~i~~~~~~~~~~~iiVv~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~sv~~al~~~~ 78 (214)
|+..+||+|++++|||||+|+++++.+++ +++++|++++.. +.+.+.+......+.++.. ..+..++++.|+..+.
T Consensus 18 m~~~~pK~llpi~gkpli~~~l~~l~~~g-~~~iivvv~~~~-~~i~~~~~~~~~~~~~~~~~~~~Gt~~si~~al~~l~ 95 (482)
T PRK14352 18 MRSDTPKVLHTLAGRSMLGHVLHAAAGLA-PQHLVVVVGHDR-ERVAPAVAELAPEVDIAVQDEQPGTGHAVQCALEALP 95 (482)
T ss_pred CCCCCCceeceeCCccHHHHHHHHHHhcC-CCcEEEEECCCH-HHHHHHhhccCCccEEEeCCCCCCcHHHHHHHHHHhc
Confidence 55568999999999999999999999875 789999998765 4455555443322333321 1234678999998875
Q ss_pred c-CCCeEEEEcCCCCCCCHHHHHHHHHHHHhcCCe--EEeeeccccE----EEecCCCceeeecCccc-------hhhhc
Q 028081 79 F-NSELVCIHDSARPLVLSKDVQKVLMDALRVGAA--VLGVPAKATI----KEANSESFVVRTLDRKT-------LWEMQ 144 (214)
Q Consensus 79 ~-~~~~vl~~~~d~P~v~~~~i~~~i~~~~~~~~~--i~~~~~~~~~----~~~~~~g~v~~~~~r~~-------~~~~~ 144 (214)
. ..+.+++++||+||+++++++++++.+...++. +...+..++. ...+++|.+.++.++.. ....+
T Consensus 96 ~~~~~~vlV~~gD~P~~~~~~l~~li~~~~~~~~~~~v~~~~~~~p~~yg~~~~~~~g~V~~~~EKp~~~~~~~~~~~~~ 175 (482)
T PRK14352 96 ADFDGTVVVTAGDVPLLDGETLADLVATHTAEGNAVTVLTTTLDDPTGYGRILRDQDGEVTAIVEQKDATPSQRAIREVN 175 (482)
T ss_pred cCCCCeEEEEeCCeeccCHHHHHHHHHHHHhcCCeEEEEEeecCCCCCCCEEEECCCCCEEEEEECCCCCHHHhhcceEE
Confidence 3 236789999999999999999999987665543 3333444442 12244566766554322 11233
Q ss_pred C-CcccChHHHHHHHHHHHh----cCCCCCcHHHHHHhCCCCeEEEecCCCCcccCCHHHH
Q 028081 145 T-PQVIKPDLLKKGFELVNR----EGLEVTDDVSIVEHLKHPVYITEGSYTNIKVTTPDDL 200 (214)
Q Consensus 145 ~-p~~f~~~~l~~~~~~~~~----~~~~~~d~~~~~~~~g~~i~~v~~~~~~~~Idtp~Dl 200 (214)
+ +|.|+.+.|..++..... ..++++|....+...|.++..++.+..|.++.+++++
T Consensus 176 ~Giy~f~~~~l~~~~~~~~~~~~~~e~~l~d~i~~l~~~g~~V~~~~~~g~w~~~g~~~~~ 236 (482)
T PRK14352 176 SGVYAFDAAVLRSALARLSSDNAQGELYLTDVLAIAREAGHRVGAHHADDSAEVAGVNDRV 236 (482)
T ss_pred EEEEEEEHHHHHHHHHhhCccccCCcEeHHHHHHHHHHCCCeEEEEecCCcceEEcCCCHH
Confidence 3 799998888776654332 2356788777777888889887776778888877776
|
|
| >TIGR03310 matur_ygfJ molybdenum hydroxylase accessory protein, YgfJ family | Back alignment and domain information |
|---|
Probab=99.78 E-value=1.8e-17 Score=126.24 Aligned_cols=168 Identities=19% Similarity=0.209 Sum_probs=107.3
Q ss_pred CCceeeeeCCeehHHHHHHHHhcCCCcCeEEEEeCCCchHHHHHHHHhcCCcEEEecC---CccHHHHHHHHHhhcccCC
Q 028081 5 MPKQYLPLLGQPIALYSFYTFSRMVEVKEIVVVCDPSYSDIFEETKEKINVDLKFSLP---GKERQDSVYSGLQEVDFNS 81 (214)
Q Consensus 5 ~~K~l~~l~gkpli~~~i~~~~~~~~~~~iiVv~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~sv~~al~~~~~~~ 81 (214)
.||+|++++|+|||.|+++++.++. +++|+|+++++..+.+..++..++ +.++.. ..++.+|+..|+. +..+.
T Consensus 15 ~~K~ll~~~g~pll~~~i~~l~~~~-~~~iivv~~~~~~~~~~~~~~~~~--v~~v~~~~~~~g~~~si~~~l~-~~~~~ 90 (188)
T TIGR03310 15 QNKLLLPYKGKTILEHVVDNALRLF-FDEVILVLGHEADELVALLANHSN--ITLVHNPQYAEGQSSSIKLGLE-LPVQS 90 (188)
T ss_pred CCceecccCCeeHHHHHHHHHHHcC-CCcEEEEeCCcHHHHHHHhccCCC--eEEEECcChhcCHHHHHHHHhc-CCCCC
Confidence 5899999999999999999998775 899999999876332333332333 333322 2356788999987 22235
Q ss_pred CeEEEEcCCCCCCCHHHHHHHHHHHHhcCCeEEeeeccccEEEecCCCceeeecCccchhhhcCCcccChHHHHHHHHHH
Q 028081 82 ELVCIHDSARPLVLSKDVQKVLMDALRVGAAVLGVPAKATIKEANSESFVVRTLDRKTLWEMQTPQVIKPDLLKKGFELV 161 (214)
Q Consensus 82 ~~vl~~~~d~P~v~~~~i~~~i~~~~~~~~~i~~~~~~~~~~~~~~~g~v~~~~~r~~~~~~~~p~~f~~~~l~~~~~~~ 161 (214)
+.+++++||+||++++.++++++.+...+..+ +.+... ++. ..|-.|+...+..+.+.
T Consensus 91 ~~vlv~~~D~P~i~~~~i~~l~~~~~~~~~~~-~~~~~~-------~~~-------------~~Pl~~~~~~~~~l~~~- 148 (188)
T TIGR03310 91 DGYLFLLGDQPFVTPDIIQLLLEAFALKNDEI-VVPLYK-------GKR-------------GHPVLFPRKLFPELLAL- 148 (188)
T ss_pred CEEEEEeCCcCCCCHHHHHHHHHHHHhCCCcE-EEeecC-------Ccc-------------CCCEEECHHHHHHHHhC-
Confidence 78999999999999999999998775543322 222211 111 03556776655543221
Q ss_pred HhcCCCCCcHHHHHHhCCCCeEEEec--CCCCcccCCHHHHHH
Q 028081 162 NREGLEVTDDVSIVEHLKHPVYITEG--SYTNIKVTTPDDLLI 202 (214)
Q Consensus 162 ~~~~~~~~d~~~~~~~~g~~i~~v~~--~~~~~~Idtp~Dl~~ 202 (214)
.+. .....++++....+..+.. ....++||||+||+.
T Consensus 149 --~~~--~~~~~~l~~~~~~~~~~~~~~~~~~~nint~~d~~~ 187 (188)
T TIGR03310 149 --TGD--TGGRQILRELPHEVKYVEVKDPGILFDIDTPEDYQA 187 (188)
T ss_pred --CCC--ccHHHHHHhCcccEEEEEcCCCceeECCCCHHHHhh
Confidence 111 1223445555434444433 345789999999974
|
Members of this protein family are probable accessory proteins for the biosynthesis of enzymes related to xanthine dehydrogenase. Comparative genomics suggests a role in the maturation of selenium-dependent molybdenum hydroxylases, although a tenuous alternative hypothesis is a role for this protein (with a requirement for SelD, the selenium donor protein in the selenocysteine and selenouridine biosynthesis pathways) metabolizing a selenium-containing substrate such as selenate. |
| >cd02503 MobA MobA catalyzes the formation of molybdopterin guanine dinucleotide | Back alignment and domain information |
|---|
Probab=99.77 E-value=4e-17 Score=123.67 Aligned_cols=92 Identities=18% Similarity=0.290 Sum_probs=73.3
Q ss_pred CceeeeeCCeehHHHHHHHHhcCCCcCeEEEEeCCCchHHHHHHHHhcCCcEEEec-CCccHHHHHHHHHhhcccCCCeE
Q 028081 6 PKQYLPLLGQPIALYSFYTFSRMVEVKEIVVVCDPSYSDIFEETKEKINVDLKFSL-PGKERQDSVYSGLQEVDFNSELV 84 (214)
Q Consensus 6 ~K~l~~l~gkpli~~~i~~~~~~~~~~~iiVv~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~sv~~al~~~~~~~~~v 84 (214)
||++++++|+|||+|+++++... +++|+|+++++... ...++..+..-. .+.++.+|++.|+..++ .+.+
T Consensus 17 ~K~ll~~~g~~ll~~~i~~l~~~--~~~iivv~~~~~~~-----~~~~~~~~v~~~~~~~G~~~si~~~l~~~~--~~~v 87 (181)
T cd02503 17 DKALLELGGKPLLEHVLERLKPL--VDEVVISANRDQER-----YALLGVPVIPDEPPGKGPLAGILAALRAAP--ADWV 87 (181)
T ss_pred CceeeEECCEEHHHHHHHHHHhh--cCEEEEECCCChHH-----HhhcCCcEeeCCCCCCCCHHHHHHHHHhcC--CCeE
Confidence 89999999999999999999875 79999999887521 223333322111 23467899999998875 6889
Q ss_pred EEEcCCCCCCCHHHHHHHHHHH
Q 028081 85 CIHDSARPLVLSKDVQKVLMDA 106 (214)
Q Consensus 85 l~~~~d~P~v~~~~i~~~i~~~ 106 (214)
+++.||+||+++++++.+++.+
T Consensus 88 lv~~~D~P~i~~~~i~~l~~~~ 109 (181)
T cd02503 88 LVLACDMPFLPPELLERLLAAA 109 (181)
T ss_pred EEEeCCcCCCCHHHHHHHHHhh
Confidence 9999999999999999999877
|
The prokaryotic enzyme molybdopterin-guanine dinucleotide biosynthesis protein A (MobA). All mononuclear molybdoenzymes bind molybdenum in complex with an organic cofactor termed molybdopterin (MPT). In many bacteria, including Escherichia coli, molybdopterin can be further modified by attachment of a GMP group to the terminal phosphate of molybdopterin to form molybdopterin guanine dinucleotide (MGD). This GMP attachment step is catalyzed by MobA, by linking a guanosine 5'-phosphate to MPT forming molybdopterin guanine dinucleotide. This reaction requires GTP, MgCl2, and the MPT form of the cofactor. It is a reaction unique to prokaryotes, and therefore may represent a potential drug target. |
| >TIGR02665 molyb_mobA molybdopterin-guanine dinucleotide biosynthesis protein A, proteobacterial | Back alignment and domain information |
|---|
Probab=99.77 E-value=5.2e-17 Score=123.57 Aligned_cols=100 Identities=11% Similarity=0.124 Sum_probs=75.9
Q ss_pred CCceeeeeCCeehHHHHHHHHhcCCCcCeEEEEeCCCchHHHHHHHHhcCCcEEE--ecCCccHHHHHHHHHhhcccCCC
Q 028081 5 MPKQYLPLLGQPIALYSFYTFSRMVEVKEIVVVCDPSYSDIFEETKEKINVDLKF--SLPGKERQDSVYSGLQEVDFNSE 82 (214)
Q Consensus 5 ~~K~l~~l~gkpli~~~i~~~~~~~~~~~iiVv~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~sv~~al~~~~~~~~ 82 (214)
.||+|++++|+|||.|+++++.. .+++|+|+++++.. ... ...++..+.. ..++.++.+|++.|+..++ .+
T Consensus 17 ~~K~l~~i~g~pll~~~l~~l~~--~~~~ivv~~~~~~~-~~~--~~~~~~~~i~~~~~~~~g~~~si~~al~~~~--~~ 89 (186)
T TIGR02665 17 RDKGLVELGGKPLIEHVLARLRP--QVSDLAISANRNPE-RYA--QAGFGLPVVPDALADFPGPLAGILAGLRWAG--TD 89 (186)
T ss_pred CCCceeEECCEEHHHHHHHHHHh--hCCEEEEEcCCCHH-HHh--hccCCCcEEecCCCCCCCCHHHHHHHHHhcC--CC
Confidence 49999999999999999999974 48999999876542 111 1123333222 2344678999999998875 57
Q ss_pred eEEEEcCCCCCCCHHHHHHHHHHHHhcCC
Q 028081 83 LVCIHDSARPLVLSKDVQKVLMDALRVGA 111 (214)
Q Consensus 83 ~vl~~~~d~P~v~~~~i~~~i~~~~~~~~ 111 (214)
++++++||+||++++.|+++++.+...++
T Consensus 90 ~vlv~~~D~P~i~~~~i~~l~~~~~~~~~ 118 (186)
T TIGR02665 90 WVLTVPCDTPFLPEDLVARLAAALEASDA 118 (186)
T ss_pred eEEEEecCCCcCCHHHHHHHHHHhhccCC
Confidence 89999999999999999999998764333
|
In many molybdopterin-containing enzymes, including nitrate reductase and dimethylsulfoxide reductase, the cofactor is molybdopterin-guanine dinucleotide. The family described here contains MobA, molybdopterin-guanine dinucleotide biosynthesis protein A, from the Proteobacteria only. MobA can reconstitute molybdopterin-guanine dinucleotide biosynthesis without the product of the neighboring gene MobB. The probable MobA proteins of other lineages differ sufficiently that they are not included in scope of this family. |
| >PRK02726 molybdopterin-guanine dinucleotide biosynthesis protein A; Provisional | Back alignment and domain information |
|---|
Probab=99.75 E-value=1.6e-16 Score=122.29 Aligned_cols=169 Identities=16% Similarity=0.173 Sum_probs=106.0
Q ss_pred CCCCCCceeeeeCCeehHHHHHHHHhcCCCcCeEEEEeCCCchHHHHHHHHhcCCcEEEecC---CccHHHHHHHHHhhc
Q 028081 1 MGANMPKQYLPLLGQPIALYSFYTFSRMVEVKEIVVVCDPSYSDIFEETKEKINVDLKFSLP---GKERQDSVYSGLQEV 77 (214)
Q Consensus 1 m~~~~~K~l~~l~gkpli~~~i~~~~~~~~~~~iiVv~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~sv~~al~~~ 77 (214)
||+ +|+|++++|+|||+|+++++... +++|+|++++.+ ....... .+ +.++.+ +.++.+|+..|+..+
T Consensus 21 mg~--~K~ll~~~g~~ll~~~i~~l~~~--~~~ivvv~~~~~--~~~~~~~-~~--~~~i~~~~~~~G~~~si~~~l~~~ 91 (200)
T PRK02726 21 MGQ--DKALLPWQGVPLLQRVARIAAAC--ADEVYIITPWPE--RYQSLLP-PG--CHWLREPPPSQGPLVAFAQGLPQI 91 (200)
T ss_pred CCC--CceeeEECCEeHHHHHHHHHHhh--CCEEEEECCCHH--HHHhhcc-CC--CeEecCCCCCCChHHHHHHHHHhC
Confidence 554 89999999999999999999753 689999987542 2222211 12 333322 346789999999988
Q ss_pred ccCCCeEEEEcCCCCCCCHHHHHHHHHHHHhc-CCeEEeeeccccEEEecCCCceeeecCccchhhhcCCc--ccChHHH
Q 028081 78 DFNSELVCIHDSARPLVLSKDVQKVLMDALRV-GAAVLGVPAKATIKEANSESFVVRTLDRKTLWEMQTPQ--VIKPDLL 154 (214)
Q Consensus 78 ~~~~~~vl~~~~d~P~v~~~~i~~~i~~~~~~-~~~i~~~~~~~~~~~~~~~g~v~~~~~r~~~~~~~~p~--~f~~~~l 154 (214)
+ .+++++++||+||+++++|+++++.+... +..+.+.+..+. .+ .|- .|++..+
T Consensus 92 ~--~~~vlv~~~D~P~i~~~~i~~l~~~~~~~~~~~~~~~~~~~~------~~---------------~Pl~~~~~~~~~ 148 (200)
T PRK02726 92 K--TEWVLLLACDLPRLTVDVLQEWLQQLENVPEEAIAALPKQEK------GW---------------EPLCGFYRRRCL 148 (200)
T ss_pred C--CCcEEEEeCCCCCCCHHHHHHHHHHhhcCCCCceEEEecCCC------Cc---------------ccEEeeecHHHH
Confidence 5 47899999999999999999999977542 233333332211 01 232 2555544
Q ss_pred HHHHHHHHhcCCCCCcHHHHHHhCCCCeEEEe--cCCCCcccCCHHHHHHHHHH
Q 028081 155 KKGFELVNREGLEVTDDVSIVEHLKHPVYITE--GSYTNIKVTTPDDLLIAERI 206 (214)
Q Consensus 155 ~~~~~~~~~~~~~~~d~~~~~~~~g~~i~~v~--~~~~~~~Idtp~Dl~~a~~~ 206 (214)
..+..... +|. .....+++..+ +..++ .....++||||+||+.+..+
T Consensus 149 ~~l~~~~~-~g~--~~l~~~l~~~~--~~~v~~~~~~~~~ninTped~~~~~~~ 197 (200)
T PRK02726 149 PSLEQFIQ-QGG--RSFQGWLAQVP--VQELALSDPDMLFNCNTPEDLATIQGI 197 (200)
T ss_pred HHHHHHHH-hCC--ccHHHHHhhCC--ceEecCCCchhhccCCCHHHHHHHhhc
Confidence 44433222 221 11223344443 23333 23456899999999987654
|
|
| >PRK14355 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.75 E-value=2.2e-16 Score=135.97 Aligned_cols=206 Identities=19% Similarity=0.179 Sum_probs=136.0
Q ss_pred CCCCCCceeeeeCCeehHHHHHHHHhcCCCcCeEEEEeCCCchHHHHHHHHhcCCcEEEecC--CccHHHHHHHHHhhcc
Q 028081 1 MGANMPKQYLPLLGQPIALYSFYTFSRMVEVKEIVVVCDPSYSDIFEETKEKINVDLKFSLP--GKERQDSVYSGLQEVD 78 (214)
Q Consensus 1 m~~~~~K~l~~l~gkpli~~~i~~~~~~~~~~~iiVv~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~sv~~al~~~~ 78 (214)
|+...||+|++++|+|||.|+++++.+++ ++++++++++.. +.+.+.+.+.+ .+.++.. ..+..+++..|+..++
T Consensus 17 l~~~~pK~l~pi~g~pli~~~l~~l~~~g-i~~iiiv~~~~~-~~i~~~~~~~~-~i~~~~~~~~~Gt~~al~~a~~~l~ 93 (459)
T PRK14355 17 MKSDLVKVMHPLAGRPMVSWPVAAAREAG-AGRIVLVVGHQA-EKVREHFAGDG-DVSFALQEEQLGTGHAVACAAPALD 93 (459)
T ss_pred cCCCCCceeceeCCccHHHHHHHHHHhcC-CCeEEEEECCCH-HHHHHHhccCC-ceEEEecCCCCCHHHHHHHHHHHhh
Confidence 34467999999999999999999999885 899999998764 44555554322 3434322 2234678999998886
Q ss_pred cCCCeEEEEcCCCCCCCHHHHHHHHHHHHhcCCeEEe--eeccccE----EEecCCCceeeecCccc-------hhhhc-
Q 028081 79 FNSELVCIHDSARPLVLSKDVQKVLMDALRVGAAVLG--VPAKATI----KEANSESFVVRTLDRKT-------LWEMQ- 144 (214)
Q Consensus 79 ~~~~~vl~~~~d~P~v~~~~i~~~i~~~~~~~~~i~~--~~~~~~~----~~~~~~g~v~~~~~r~~-------~~~~~- 144 (214)
...+.+++++||+||++++.++++++.+...++.+++ .+..++. ...+++|.+....+... .....
T Consensus 94 ~~~~~vlv~~gD~p~~~~~~i~~l~~~~~~~~~~~~v~~~~~~~~~~~g~v~~d~~g~v~~~~ek~~~~~~~~~~~~~~~ 173 (459)
T PRK14355 94 GFSGTVLILCGDVPLLRAETLQGMLAAHRATGAAVTVLTARLENPFGYGRIVRDADGRVLRIVEEKDATPEERSIREVNS 173 (459)
T ss_pred ccCCcEEEEECCccCcCHHHHHHHHHHHHhcCCcEEEEEEEcCCCCcCCEEEEcCCCCEEEEEEcCCCChhHhhccEEEE
Confidence 3346799999999999999999999987665543333 3333331 12344555654432110 01111
Q ss_pred CCcccChHHHHHHHHHHHh----cCCCCCcHHHHHHhCCCCeEEEecCC--CCcccCCHHHHHHHHHHhhc
Q 028081 145 TPQVIKPDLLKKGFELVNR----EGLEVTDDVSIVEHLKHPVYITEGSY--TNIKVTTPDDLLIAERILNL 209 (214)
Q Consensus 145 ~p~~f~~~~l~~~~~~~~~----~~~~~~d~~~~~~~~g~~i~~v~~~~--~~~~Idtp~Dl~~a~~~~~~ 209 (214)
.-+.|+.+.+.+++..... ..++++|....+...|.++...+.+. .+++|+||+||..|+.++..
T Consensus 174 Giy~~~~~~l~~~l~~~~~~~~~~e~~~~d~i~~l~~~g~~v~~~~~~~~~~~~~i~~~~~~~~a~~~l~~ 244 (459)
T PRK14355 174 GIYCVEAAFLFDAIGRLGNDNAQGEYYLTDIVAMAAAEGLRCLAFPVADPDEIMGVNDRAQLAEAARVLRR 244 (459)
T ss_pred EEEEEeHHHHHHHHHHcCccccCCceeHHHHHHHHHHCCCeEEEEEcCCHHHhcCCCCHHHHHHHHHHHHH
Confidence 2367777665555543221 22566766666667788888766543 48999999999999876654
|
|
| >COG1861 SpsF Spore coat polysaccharide biosynthesis protein F, CMP-KDO synthetase homolog [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=99.70 E-value=9.3e-16 Score=115.76 Aligned_cols=182 Identities=19% Similarity=0.258 Sum_probs=116.4
Q ss_pred CCCC-CC-ceeeeeCCeehHHHHHHHHhcCCCcCeEEEEeCCCch-HHHHHHHHhcCCcEEEecCCccH-HHHHHHHHhh
Q 028081 1 MGAN-MP-KQYLPLLGQPIALYSFYTFSRMVEVKEIVVVCDPSYS-DIFEETKEKINVDLKFSLPGKER-QDSVYSGLQE 76 (214)
Q Consensus 1 m~~~-~~-K~l~~l~gkpli~~~i~~~~~~~~~~~iiVv~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~-~~sv~~al~~ 76 (214)
|||. .| |.|++|+|+|||.+++++++.++.+++|+|+|...+. +.+++.+...|. .+..|.... +.-...++++
T Consensus 12 mgStRLpgKvLlpL~~~pmI~~~lervrks~~~d~ivvATS~~~~d~~l~~~~~~~G~--~vfrGs~~dVL~Rf~~a~~a 89 (241)
T COG1861 12 MGSTRLPGKVLLPLGGEPMIEYQLERVRKSKDLDKIVVATSDKEEDDALEEVCRSHGF--YVFRGSEEDVLQRFIIAIKA 89 (241)
T ss_pred ccCccCCcchhhhcCCCchHHHHHHHHhccccccceEEEecCCcchhHHHHHHHHcCe--eEecCCHHHHHHHHHHHHHh
Confidence 7885 45 9999999999999999999999999999999987754 456777777763 445554333 4445556666
Q ss_pred cccCCCeEEEEcCCCCCCCHHHHHHHHHHHHhcCCeEEeeeccccEEEecCCCceeeecCccchhhhcCCcccChHHHHH
Q 028081 77 VDFNSELVCIHDSARPLVLSKDVQKVLMDALRVGAAVLGVPAKATIKEANSESFVVRTLDRKTLWEMQTPQVIKPDLLKK 156 (214)
Q Consensus 77 ~~~~~~~vl~~~~d~P~v~~~~i~~~i~~~~~~~~~i~~~~~~~~~~~~~~~g~v~~~~~r~~~~~~~~p~~f~~~~l~~ 156 (214)
.+ .+.|+-+.||.||++++.++.+++.+.+.++-.+.. .... -|. .-++|+...|..
T Consensus 90 ~~--~~~VVRvTGD~P~~dp~l~d~~v~~~l~~gaDY~s~--~~~p-----~G~--------------~vEV~~a~~L~~ 146 (241)
T COG1861 90 YS--ADVVVRVTGDNPFLDPELVDAAVDRHLEKGADYVSN--TGAP-----LGT--------------DVEVMKARALKK 146 (241)
T ss_pred cC--CCeEEEeeCCCCCCCHHHHHHHHHHHHhcCCccccc--cCCc-----ccc--------------ceeeeehHHHHH
Confidence 54 678999999999999999999999876655421100 0000 010 123444444544
Q ss_pred HHHHHHhcCCCCCcHH-HHHH-hCC-CCeEEEecCC------CCcccCCHHHHHHHHHHhhc
Q 028081 157 GFELVNREGLEVTDDV-SIVE-HLK-HPVYITEGSY------TNIKVTTPDDLLIAERILNL 209 (214)
Q Consensus 157 ~~~~~~~~~~~~~d~~-~~~~-~~g-~~i~~v~~~~------~~~~Idtp~Dl~~a~~~~~~ 209 (214)
+-..... .+ ..+.. ..+. +.+ .++.+++.+. .-+.|||++||++++++++.
T Consensus 147 a~k~~~e-~~-~rEhvT~yi~n~P~~fk~~~l~~p~~~~~~~~RltvDt~eD~~~~~~vye~ 206 (241)
T COG1861 147 AAKEALE-AY-YREHVTPYIRNNPERFKVAYLEAPEAWKRPDYRLTVDTQEDFALAKAVYEY 206 (241)
T ss_pred hHhhccc-hh-hhhccCHHHHhCCceEEEEeecChhhccCCceEEEeccHHHHHHHHHHHHH
Confidence 3222110 01 01111 1122 222 4556664332 34779999999999998764
|
|
| >PRK14489 putative bifunctional molybdopterin-guanine dinucleotide biosynthesis protein MobA/MobB; Provisional | Back alignment and domain information |
|---|
Probab=99.70 E-value=1.6e-15 Score=126.83 Aligned_cols=173 Identities=16% Similarity=0.148 Sum_probs=107.9
Q ss_pred CCCceeeeeCCeehHHHHHHHHhcCCCcCeEEEEeCCCchHHHHHHHHhcCCcEEEecCCccHHHHHHHHHhhcccCCCe
Q 028081 4 NMPKQYLPLLGQPIALYSFYTFSRMVEVKEIVVVCDPSYSDIFEETKEKINVDLKFSLPGKERQDSVYSGLQEVDFNSEL 83 (214)
Q Consensus 4 ~~~K~l~~l~gkpli~~~i~~~~~~~~~~~iiVv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sv~~al~~~~~~~~~ 83 (214)
+.||+|++++|+|||+|+++++.. .+++|+|+++.+. +.+...............++.++.+|++.|++.+. .++
T Consensus 21 g~~K~ll~i~Gkpll~~~i~~l~~--~~~~iivvv~~~~-~~~~~~~~~~~~i~d~~~g~~G~~~si~~gl~~~~--~~~ 95 (366)
T PRK14489 21 GRDKALILLGGKPLIERVVDRLRP--QFARIHLNINRDP-ARYQDLFPGLPVYPDILPGFQGPLSGILAGLEHAD--SEY 95 (366)
T ss_pred CCCCceeEECCeeHHHHHHHHHHh--hCCEEEEEcCCCH-HHHHhhccCCcEEecCCCCCCChHHHHHHHHHhcC--CCc
Confidence 369999999999999999999974 3789998776543 22332211111111123344578899999998875 578
Q ss_pred EEEEcCCCCCCCHHHHHHHHHHHHhcCCeEEeeeccccEEEecCCCceeeecCccchhhhcCCc--ccChHHHHHHHHHH
Q 028081 84 VCIHDSARPLVLSKDVQKVLMDALRVGAAVLGVPAKATIKEANSESFVVRTLDRKTLWEMQTPQ--VIKPDLLKKGFELV 161 (214)
Q Consensus 84 vl~~~~d~P~v~~~~i~~~i~~~~~~~~~i~~~~~~~~~~~~~~~g~v~~~~~r~~~~~~~~p~--~f~~~~l~~~~~~~ 161 (214)
+++++||+||+++++++++++.+...+..+ +.+.. ++.. .|- .|+++.+..+.+ .
T Consensus 96 vlv~~~D~P~i~~~~i~~L~~~~~~~~~~~-v~~~~--------g~~g-------------~Pl~aiy~~~~~~~l~~-~ 152 (366)
T PRK14489 96 LFVVACDTPFLPENLVKRLSKALAIEGADI-AVPHD--------GERA-------------HPLFALYHRSCLPALRR-Y 152 (366)
T ss_pred EEEeeCCcCCCCHHHHHHHHHHhhccCCeE-EEEec--------CCCc-------------eeeEEEEcHHHHHHHHH-H
Confidence 999999999999999999999765433322 22211 1111 244 566655544333 3
Q ss_pred HhcCCCCCcHHHHHHhCCCCeEEEec--C-CCCcccCCHHHHHHHHHHhh
Q 028081 162 NREGLEVTDDVSIVEHLKHPVYITEG--S-YTNIKVTTPDDLLIAERILN 208 (214)
Q Consensus 162 ~~~~~~~~d~~~~~~~~g~~i~~v~~--~-~~~~~Idtp~Dl~~a~~~~~ 208 (214)
..+|. .....++.+. .+..++. + ...++||||+||+.+++...
T Consensus 153 l~~G~--~~l~~~l~~~--~~~~v~~~~~~~~~~nINTpeDl~~l~~~~~ 198 (366)
T PRK14489 153 LAEGE--RRLFDFFQRQ--RVRYVDLSTQKDAFFNVNTPEDLEQLRAIPD 198 (366)
T ss_pred HHhCC--ccHHHHHHhC--CcEEEeccCCccccccCCCHHHHHHHhhhhh
Confidence 33331 1111222332 3444432 2 34679999999999987743
|
|
| >PRK14358 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.68 E-value=2.3e-15 Score=130.29 Aligned_cols=205 Identities=16% Similarity=0.160 Sum_probs=131.8
Q ss_pred CCCCCCceeeeeCCeehHHHHHHHHhcCCCcCeEEEEeCCCchHHHHHHHHhcCCcEEEecC--CccHHHHHHHHHhhcc
Q 028081 1 MGANMPKQYLPLLGQPIALYSFYTFSRMVEVKEIVVVCDPSYSDIFEETKEKINVDLKFSLP--GKERQDSVYSGLQEVD 78 (214)
Q Consensus 1 m~~~~~K~l~~l~gkpli~~~i~~~~~~~~~~~iiVv~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~sv~~al~~~~ 78 (214)
|+...||+|++++|+|||+|+++++.+++ +++|+|++++.. +.+.+.+...+ +.++.. ..+..++++.|+..+.
T Consensus 21 l~~~~pK~llpi~gkpli~~~l~~l~~~g-i~~ivvv~~~~~-~~i~~~~~~~~--i~~v~~~~~~Gt~~al~~~~~~l~ 96 (481)
T PRK14358 21 MKSALPKVLHPVAGRPMVAWAVKAARDLG-ARKIVVVTGHGA-EQVEAALQGSG--VAFARQEQQLGTGDAFLSGASALT 96 (481)
T ss_pred CCCCCCceecEECCeeHHHHHHHHHHhCC-CCeEEEEeCCCH-HHHHHHhccCC--cEEecCCCcCCcHHHHHHHHHHhh
Confidence 45567999999999999999999999875 899999999865 44555554433 344432 2234788888888875
Q ss_pred cCCCeEEEEcCCCCCCCHHHHHHHHHHHHhcCCeE--EeeeccccE----EEecCCCceeeecCcc-----ch--hhhc-
Q 028081 79 FNSELVCIHDSARPLVLSKDVQKVLMDALRVGAAV--LGVPAKATI----KEANSESFVVRTLDRK-----TL--WEMQ- 144 (214)
Q Consensus 79 ~~~~~vl~~~~d~P~v~~~~i~~~i~~~~~~~~~i--~~~~~~~~~----~~~~~~g~v~~~~~r~-----~~--~~~~- 144 (214)
...+.+++++||+||+++.+++++++.+...++.+ .+.++.++. ...+++|.+....+.. .. ...+
T Consensus 97 ~~~~~~lV~~gD~P~i~~~~l~~ll~~~~~~~~~~ti~~~~~~~~~~yG~v~~d~~g~v~~~~Ek~~~~~~~~~~~~~n~ 176 (481)
T PRK14358 97 EGDADILVLYGDTPLLRPDTLRALVADHRAQGSAMTILTGELPDATGYGRIVRGADGAVERIVEQKDATDAEKAIGEFNS 176 (481)
T ss_pred CCCCcEEEEeCCeeccCHHHHHHHHHHHHhcCCeEEEEEEEcCCCCCceEEEECCCCCEEEEEECCCCChhHhhCCeEEE
Confidence 22233788999999999999999999887655433 333443321 1234456665443211 00 0122
Q ss_pred CCcccChHHHHHHHHHHH---h-cCCCCCcHHHHHHhCCCCeEEEec--CCCCcccCCHHHHHHHHHHhhcc
Q 028081 145 TPQVIKPDLLKKGFELVN---R-EGLEVTDDVSIVEHLKHPVYITEG--SYTNIKVTTPDDLLIAERILNLS 210 (214)
Q Consensus 145 ~p~~f~~~~l~~~~~~~~---~-~~~~~~d~~~~~~~~g~~i~~v~~--~~~~~~Idtp~Dl~~a~~~~~~~ 210 (214)
.-+.|+.+. .+++.... . +.++++|....+...|.++...+. ....++++++++++.++.+++.+
T Consensus 177 Giyi~~~~~-~~~~~~i~~~~~~ge~~l~d~i~~~~~~g~~i~~~~~~~~~~~i~~~~~~~l~~~~~~l~~~ 247 (481)
T PRK14358 177 GVYVFDARA-PELARRIGNDNKAGEYYLTDLLGLYRAGGAQVRAFKLSDPDEVLGANDRAGLAQLEATLRRR 247 (481)
T ss_pred EEEEEchHH-HHHHHhcCCCccCCeEEHHHHHHHHHHCCCeEEEEecCCHHHhcCCCCHHHHHHHHHHHHHH
Confidence 236777542 33333321 1 235677766666677777776543 35678899999888877666543
|
|
| >cd06915 NTP_transferase_WcbM_like WcbM_like is a subfamily of nucleotidyl transferases | Back alignment and domain information |
|---|
Probab=99.67 E-value=3.4e-15 Score=116.40 Aligned_cols=190 Identities=13% Similarity=0.156 Sum_probs=117.5
Q ss_pred CCCceeeeeCCeehHHHHHHHHhcCCCcCeEEEEeCCCchHHHHHHHHh---cCCcEEEec--CCccHHHHHHHHHhhcc
Q 028081 4 NMPKQYLPLLGQPIALYSFYTFSRMVEVKEIVVVCDPSYSDIFEETKEK---INVDLKFSL--PGKERQDSVYSGLQEVD 78 (214)
Q Consensus 4 ~~~K~l~~l~gkpli~~~i~~~~~~~~~~~iiVv~~~~~~~~~~~~~~~---~~~~~~~~~--~~~~~~~sv~~al~~~~ 78 (214)
+.||+|++++|+|||.|+++.+.+++ +++|+|++++.. +.+.+.+.. ++..+.+.. ...+..++++.|++.+.
T Consensus 18 ~~pK~ll~i~g~pli~~~l~~l~~~g-~~~v~vv~~~~~-~~i~~~~~~~~~~~~~~~~~~~~~~~G~~~~l~~a~~~~~ 95 (223)
T cd06915 18 DLPKPLAPVAGRPFLEYLLEYLARQG-ISRIVLSVGYLA-EQIEEYFGDGYRGGIRIYYVIEPEPLGTGGAIKNALPKLP 95 (223)
T ss_pred CCCccccEECCcchHHHHHHHHHHCC-CCEEEEEcccCH-HHHHHHHcCccccCceEEEEECCCCCcchHHHHHHHhhcC
Confidence 47999999999999999999999875 899999998764 445555543 133333332 23345778999998874
Q ss_pred cCCCeEEEEcCCCCCCCHHHHHHHHHHHHhcC--CeEEeeecccc----EEEecCCCceeeecCccc---hhhhc-CCcc
Q 028081 79 FNSELVCIHDSARPLVLSKDVQKVLMDALRVG--AAVLGVPAKAT----IKEANSESFVVRTLDRKT---LWEMQ-TPQV 148 (214)
Q Consensus 79 ~~~~~vl~~~~d~P~v~~~~i~~~i~~~~~~~--~~i~~~~~~~~----~~~~~~~g~v~~~~~r~~---~~~~~-~p~~ 148 (214)
.+.+++++||+|+ + ..+.++++.+...+ +++.+.+..+. ...++++|.+....+... ..... .-+.
T Consensus 96 --~~~~lv~~~D~~~-~-~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~d~~~~v~~~~ek~~~~~~~~~~~Giy~ 171 (223)
T cd06915 96 --EDQFLVLNGDTYF-D-VDLLALLAALRASGADATMALRRVPDASRYGNVTVDGDGRVIAFVEKGPGAAPGLINGGVYL 171 (223)
T ss_pred --CCCEEEEECCccc-C-CCHHHHHHHHHhCCCcEEEEEEECCCCCcceeEEECCCCeEEEEEeCCCCCCCCcEEEEEEE
Confidence 3668999999987 3 46788888775433 34445454332 112344456554432110 01111 2366
Q ss_pred cChHHHHHHHHHHHhcCC-CCCcHHHHHHhCCCCeEEEecCCCCcccCCHHHHHHHH
Q 028081 149 IKPDLLKKGFELVNREGL-EVTDDVSIVEHLKHPVYITEGSYTNIKVTTPDDLLIAE 204 (214)
Q Consensus 149 f~~~~l~~~~~~~~~~~~-~~~d~~~~~~~~g~~i~~v~~~~~~~~Idtp~Dl~~a~ 204 (214)
|+...|... .. .+. ..++....+...| ++..++.+..+++||||+||..|+
T Consensus 172 ~~~~~l~~~-~~---~~~~~~~~~~~~l~~~~-~v~~~~~~~~~~dI~t~~dl~~a~ 223 (223)
T cd06915 172 LRKEILAEI-PA---DAFSLEADVLPALVKRG-RLYGFEVDGYFIDIGIPEDYARAQ 223 (223)
T ss_pred ECHHHHhhC-Cc---cCCChHHHHHHHHHhcC-cEEEEecCCeEEecCCHHHHHhhC
Confidence 776655432 11 111 1222222233345 788776667799999999999873
|
WcbM protein of Burkholderia mallei is involved in the biosynthesis, export or translocation of capsule. It is a subfamily of nucleotidyl transferases that transfer nucleotides onto phosphosugars. |
| >TIGR01208 rmlA_long glucose-1-phosphate thymidylylransferase, long form | Back alignment and domain information |
|---|
Probab=99.66 E-value=9.3e-15 Score=121.92 Aligned_cols=202 Identities=14% Similarity=0.177 Sum_probs=132.1
Q ss_pred CCCCceeeeeCCeehHHHHHHHHhcCCCcCeEEEEeCCCchHHHHHHHHh---cCCcEEEecC--CccHHHHHHHHHhhc
Q 028081 3 ANMPKQYLPLLGQPIALYSFYTFSRMVEVKEIVVVCDPSYSDIFEETKEK---INVDLKFSLP--GKERQDSVYSGLQEV 77 (214)
Q Consensus 3 ~~~~K~l~~l~gkpli~~~i~~~~~~~~~~~iiVv~~~~~~~~~~~~~~~---~~~~~~~~~~--~~~~~~sv~~al~~~ 77 (214)
.++||+|++++|+|||.|+++.+.+++ +++|+|++++...+.+.+.+.. ++.++.++.. ..+..++++.|+..+
T Consensus 18 ~~~pK~l~pv~g~pli~~~l~~l~~~g-i~~i~vv~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~G~~~al~~a~~~l 96 (353)
T TIGR01208 18 FTRPKQLIPVANKPILQYAIEDLAEAG-ITDIGIVVGPVTGEEIKEIVGEGERFGAKITYIVQGEPLGLAHAVYTARDFL 96 (353)
T ss_pred cCCCccccEECCEeHHHHHHHHHHHCC-CCEEEEEeCCCCHHHHHHHHhcccccCceEEEEECCCCCCHHHHHHHHHHhc
Confidence 368999999999999999999999885 8999999998332455665543 2333444422 234578899999888
Q ss_pred ccCCCeEEEEcCCCCCCCHHHHHHHHHHHHhcC--CeEEeeecccc----EEEecCCCceeeecCccc--h-hhhc-CCc
Q 028081 78 DFNSELVCIHDSARPLVLSKDVQKVLMDALRVG--AAVLGVPAKAT----IKEANSESFVVRTLDRKT--L-WEMQ-TPQ 147 (214)
Q Consensus 78 ~~~~~~vl~~~~d~P~v~~~~i~~~i~~~~~~~--~~i~~~~~~~~----~~~~~~~g~v~~~~~r~~--~-~~~~-~p~ 147 (214)
.. +.++++.||.|+ + ..+..+++.+...+ ..+.+.++.++ +...++++.+..+.++.. . .... .-+
T Consensus 97 ~~--~~~li~~gD~~~-~-~~l~~l~~~~~~~~~d~ti~~~~~~~~~~~g~~~~~~~~~v~~~~ekp~~~~~~~~~~Giy 172 (353)
T TIGR01208 97 GD--DDFVVYLGDNLI-Q-DGISRFVKSFEEKDYDALILLTKVRDPTAFGVAVLEDGKRILKLVEKPKEPPSNLAVVGLY 172 (353)
T ss_pred CC--CCEEEEECCeec-C-ccHHHHHHHHHhcCCCcEEEEEECCChhhCeEEEEcCCCcEEEEEECCCCCCccceEEEEE
Confidence 52 346777899987 3 57888888876543 34555565543 222343445554432210 0 0111 236
Q ss_pred ccChHHHHHHHHHHHh---cCCCCCcHHHHHHhCCCCeEEEecCCCCcccCCHHHHHHHHHHhhcc
Q 028081 148 VIKPDLLKKGFELVNR---EGLEVTDDVSIVEHLKHPVYITEGSYTNIKVTTPDDLLIAERILNLS 210 (214)
Q Consensus 148 ~f~~~~l~~~~~~~~~---~~~~~~d~~~~~~~~g~~i~~v~~~~~~~~Idtp~Dl~~a~~~~~~~ 210 (214)
.|+. .+.+.+..... ..+++++....+...|.+|..+..+..|.+|+||+||..|+..+..+
T Consensus 173 ~~~~-~l~~~l~~~~~~~~~e~~l~d~l~~l~~~g~~v~~~~~~g~w~digt~~dl~~a~~~ll~~ 237 (353)
T TIGR01208 173 MFRP-LIFEAIKNIKPSWRGELEITDAIQWLIEKGYKVGGSKVTGWWKDTGKPEDLLDANRLILDE 237 (353)
T ss_pred EECH-HHHHHHHhcCCCCCCcEEHHHHHHHHHHcCCeEEEEEeCcEEEeCCCHHHHHHHHHHHHhh
Confidence 7776 44454543221 22456666566666788888877777799999999999999888654
|
Alternate name: dTDP-D-glucose synthase |
| >COG1209 RfbA dTDP-glucose pyrophosphorylase [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=99.66 E-value=9.6e-15 Score=113.92 Aligned_cols=200 Identities=18% Similarity=0.240 Sum_probs=142.6
Q ss_pred CCCCceeeeeCCeehHHHHHHHHhcCCCcCeEEEEeCCCchHHHHHHHH---hcCCcEEEecCCcc--HHHHHHHHHhhc
Q 028081 3 ANMPKQYLPLLGQPIALYSFYTFSRMVEVKEIVVVCDPSYSDIFEETKE---KINVDLKFSLPGKE--RQDSVYSGLQEV 77 (214)
Q Consensus 3 ~~~~K~l~~l~gkpli~~~i~~~~~~~~~~~iiVv~~~~~~~~~~~~~~---~~~~~~~~~~~~~~--~~~sv~~al~~~ 77 (214)
...||||+|+.+||||.|+++.+..++ +++|.|+++++....++++.. .+|.++.++.++.. -.+++..|-+++
T Consensus 19 ~~~~KqLlpV~~KPmi~y~l~~L~~aG-I~dI~II~~~~~~~~~~~llGdgs~~gv~itY~~Q~~p~GlA~Av~~a~~fv 97 (286)
T COG1209 19 RVVPKQLLPVYDKPMIYYPLETLMLAG-IRDILIVVGPEDKPTFKELLGDGSDFGVDITYAVQPEPDGLAHAVLIAEDFV 97 (286)
T ss_pred ccCCcccceecCcchhHhHHHHHHHcC-CceEEEEecCCchhhhhhhhcCccccCcceEEEecCCCCcHHHHHHHHHhhc
Confidence 357999999999999999999999986 999999999876566666654 24667777665433 366677776777
Q ss_pred ccCCCeEEEEcCCCCCCCHHHHHHHHHHHHh--cCCeEEeeeccccE----EEecCCCceeeec-----CccchhhhcCC
Q 028081 78 DFNSELVCIHDSARPLVLSKDVQKVLMDALR--VGAAVLGVPAKATI----KEANSESFVVRTL-----DRKTLWEMQTP 146 (214)
Q Consensus 78 ~~~~~~vl~~~~d~P~v~~~~i~~~i~~~~~--~~~~i~~~~~~~~~----~~~~~~g~v~~~~-----~r~~~~~~~~p 146 (214)
. .+-++++.||-=|-. .+.+.++.+.+ .++.+.+.++.|+- ...+++|++..+. ++|++ .+-.-
T Consensus 98 ~--~~~f~l~LGDNi~~~--~l~~~~~~~~~~~~ga~i~~~~V~dP~rfGV~e~d~~~~v~~l~EKP~~P~SNl-AvtGl 172 (286)
T COG1209 98 G--DDDFVLYLGDNIFQD--GLSELLEHFAEEGSGATILLYEVDDPSRYGVVEFDEDGKVIGLEEKPKEPKSNL-AVTGL 172 (286)
T ss_pred C--CCceEEEecCceecc--ChHHHHHHHhccCCCcEEEEEEcCCcccceEEEEcCCCcEEEeEECCCCCCCce-eEEEE
Confidence 5 234566679997766 78888887765 56788888998873 2335455654433 33443 22223
Q ss_pred cccChHHHHHHHHHHH---hcCCCCCcHHHHHHhCCCCeEEEecCCCCcccCCHHHHHHHHHHhhc
Q 028081 147 QVIKPDLLKKGFELVN---REGLEVTDDVSIVEHLKHPVYITEGSYTNIKVTTPDDLLIAERILNL 209 (214)
Q Consensus 147 ~~f~~~~l~~~~~~~~---~~~~~~~d~~~~~~~~g~~i~~v~~~~~~~~Idtp~Dl~~a~~~~~~ 209 (214)
|.|....+.. .+... +.++++||....+...|.++..++....|+|+.|++||..|..++..
T Consensus 173 Y~~d~~Vf~~-~~~ikPS~RGElEITd~i~~~i~~G~~~~~~~~~G~WlDtGt~~slleA~~~i~~ 237 (286)
T COG1209 173 YFYDPSVFEA-IKQIKPSARGELEITDAIDLYIEKGYLVVAILIRGWWLDTGTPESLLEANNFVRT 237 (286)
T ss_pred EEeChHHHHH-HHcCCCCCCCceEehHHHHHHHHcCcEEEEEEccceEEecCChhhHHHHHHHHHH
Confidence 5666654433 33321 23478999999999999998888776689999999999999988753
|
|
| >cd02538 G1P_TT_short G1P_TT_short is the short form of glucose-1-phosphate thymidylyltransferase | Back alignment and domain information |
|---|
Probab=99.65 E-value=3e-14 Score=112.69 Aligned_cols=200 Identities=18% Similarity=0.257 Sum_probs=123.2
Q ss_pred CCCceeeeeCCeehHHHHHHHHhcCCCcCeEEEEeCCCchHHHHHHHHh---cCCcEEEecC--CccHHHHHHHHHhhcc
Q 028081 4 NMPKQYLPLLGQPIALYSFYTFSRMVEVKEIVVVCDPSYSDIFEETKEK---INVDLKFSLP--GKERQDSVYSGLQEVD 78 (214)
Q Consensus 4 ~~~K~l~~l~gkpli~~~i~~~~~~~~~~~iiVv~~~~~~~~~~~~~~~---~~~~~~~~~~--~~~~~~sv~~al~~~~ 78 (214)
++||+|++++|+|||.|+++.+.+++ +++|+|++++...+.+.+.+.. ++..+.+... ..+..+++..|...+.
T Consensus 20 ~~pK~llpv~~~pli~~~l~~l~~~g-i~~i~vv~~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~G~~~al~~a~~~~~ 98 (240)
T cd02538 20 VVSKQLLPVYDKPMIYYPLSTLMLAG-IREILIISTPEDLPLFKELLGDGSDLGIRITYAVQPKPGGLAQAFIIGEEFIG 98 (240)
T ss_pred CCCceeeEECCEEhHHHHHHHHHHCC-CCEEEEEeCcchHHHHHHHHhcccccCceEEEeeCCCCCCHHHHHHHHHHhcC
Confidence 67999999999999999999999875 8999998876543445554432 3334443322 2234677888888775
Q ss_pred cCCCeEEEEcCCCCCCCHHHHHHHHHHHHhc--CCeEEeeecccc----EEEecCCCceeeecCccc---hhhhcC-Ccc
Q 028081 79 FNSELVCIHDSARPLVLSKDVQKVLMDALRV--GAAVLGVPAKAT----IKEANSESFVVRTLDRKT---LWEMQT-PQV 148 (214)
Q Consensus 79 ~~~~~vl~~~~d~P~v~~~~i~~~i~~~~~~--~~~i~~~~~~~~----~~~~~~~g~v~~~~~r~~---~~~~~~-p~~ 148 (214)
.+.++++.||+|+.+. .+.++++.+... ++.+.+.++.++ ...++++|.+..+.++.. .....+ -+.
T Consensus 99 --~~~~lv~~gD~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~v~~d~~g~v~~~~ekp~~~~~~~~~~Giyi 175 (240)
T cd02538 99 --DDPVCLILGDNIFYGQ-GLSPILQRAAAQKEGATVFGYEVNDPERYGVVEFDENGRVLSIEEKPKKPKSNYAVTGLYF 175 (240)
T ss_pred --CCCEEEEECCEEEccH-HHHHHHHHHHhcCCCcEEEEEECCchhcCceEEecCCCcEEEEEECCCCCCCCeEEEEEEE
Confidence 3456777999998654 678888877543 344555555443 122344566654432210 011122 366
Q ss_pred cChHHHHHHHHHHHhc--C-CCCCcHHHHHHhCCC-CeEEEecCCCCcccCCHHHHHHHHHHhh
Q 028081 149 IKPDLLKKGFELVNRE--G-LEVTDDVSIVEHLKH-PVYITEGSYTNIKVTTPDDLLIAERILN 208 (214)
Q Consensus 149 f~~~~l~~~~~~~~~~--~-~~~~d~~~~~~~~g~-~i~~v~~~~~~~~Idtp~Dl~~a~~~~~ 208 (214)
|+...+ +.+.....+ + +++++....+...|. .+..+.....++||+||+||..|+.+++
T Consensus 176 ~~~~~l-~~l~~~~~~~~~~~~l~d~~~~l~~~g~~~~~~~~~~g~w~digt~~~~~~a~~~~~ 238 (240)
T cd02538 176 YDNDVF-EIAKQLKPSARGELEITDVNNEYLEKGKLSVELLGRGFAWLDTGTHESLLEASNFVQ 238 (240)
T ss_pred ECHHHH-HHHHhcCCCCCCeEEhHHHHHHHHHhCCeEEEEeCCCcEEEeCCCHHHHHHHHHHHh
Confidence 776644 444432211 2 455665555555553 2333332367999999999999998875
|
This family is the short form of glucose-1-phosphate thymidylyltransferase. Glucose-1-phosphate thymidylyltransferase catalyses the formation of dTDP-glucose, from dTTP and glucose 1-phosphate. It is the first enzyme in the biosynthesis of dTDP-L-rhamnose, a cell wall constituent and a feedback inhibitor of the enzyme.There are two forms of Glucose-1-phosphate thymidylyltransferase in bacteria and archeae; short form and long form. The homotetrameric, feedback inhibited short form is found in numerous bacterial species that produce dTDP-L-rhamnose. The long form, which has an extra 50 amino acids c-terminal, is found in many species for which it serves as a sugar-activating enzyme for antibiotic biosynthesis and or other, unknown pathways, and in which dTDP-L-rhamnose is not necessarily produced. |
| >PRK14357 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.65 E-value=1.3e-14 Score=124.75 Aligned_cols=196 Identities=17% Similarity=0.214 Sum_probs=126.6
Q ss_pred CCCCCCceeeeeCCeehHHHHHHHHhcCCCcCeEEEEeCCCchHHHHHHHHhcCCcEEEe-c-CCccHHHHHHHHHhhcc
Q 028081 1 MGANMPKQYLPLLGQPIALYSFYTFSRMVEVKEIVVVCDPSYSDIFEETKEKINVDLKFS-L-PGKERQDSVYSGLQEVD 78 (214)
Q Consensus 1 m~~~~~K~l~~l~gkpli~~~i~~~~~~~~~~~iiVv~~~~~~~~~~~~~~~~~~~~~~~-~-~~~~~~~sv~~al~~~~ 78 (214)
|+..+||+|++++|||||+|+++++.+. +++|+|++++.. +.+.+.... .+.++ . ...+..+++++|+.++.
T Consensus 14 l~~~~pK~l~~v~gkpli~~~l~~l~~~--~~~i~vv~~~~~-~~i~~~~~~---~~~~~~~~~~~g~~~ai~~a~~~l~ 87 (448)
T PRK14357 14 MKSKIPKVLHKISGKPMINWVIDTAKKV--AQKVGVVLGHEA-ELVKKLLPE---WVKIFLQEEQLGTAHAVMCARDFIE 87 (448)
T ss_pred CCCCCCceeeEECCeeHHHHHHHHHHhc--CCcEEEEeCCCH-HHHHHhccc---ccEEEecCCCCChHHHHHHHHHhcC
Confidence 4456899999999999999999999875 489999998764 344443321 22222 2 22235788999998885
Q ss_pred cCCCeEEEEcCCCCCCCHHHHHHHHHHHHhcC--CeEEeeeccccE----EEecCCCceeeecC---c----cchhhhcC
Q 028081 79 FNSELVCIHDSARPLVLSKDVQKVLMDALRVG--AAVLGVPAKATI----KEANSESFVVRTLD---R----KTLWEMQT 145 (214)
Q Consensus 79 ~~~~~vl~~~~d~P~v~~~~i~~~i~~~~~~~--~~i~~~~~~~~~----~~~~~~g~v~~~~~---r----~~~~~~~~ 145 (214)
. .+.+++++||+||++..+++++++.+.+.+ ..+.+.+..++. ...+ +|.+ +..+ + ...+..++
T Consensus 88 ~-~~~vlv~~gD~p~i~~~~i~~l~~~~~~~~~d~ti~~~~~~~~~~~g~v~~d-~g~v-~~~e~~~~~~~~~~~~~~~~ 164 (448)
T PRK14357 88 P-GDDLLILYGDVPLISENTLKRLIEEHNRKGADVTILVADLEDPTGYGRIIRD-GGKY-RIVEDKDAPEEEKKIKEINT 164 (448)
T ss_pred c-CCeEEEEeCCcccCCHHHHHHHHHHHHhcCCeEEEEEEEcCCCCCcEEEEEc-CCeE-EEEECCCCChHHhcCcEEEe
Confidence 2 478999999999999999999999876543 345555555431 1123 3544 2221 1 11223444
Q ss_pred C-cccChHHHHHHHHHHHhc---C-CCCCcHHHHHHhCCCCeEEEec--CCCCcccCCHHHHHHHHHHhhc
Q 028081 146 P-QVIKPDLLKKGFELVNRE---G-LEVTDDVSIVEHLKHPVYITEG--SYTNIKVTTPDDLLIAERILNL 209 (214)
Q Consensus 146 p-~~f~~~~l~~~~~~~~~~---~-~~~~d~~~~~~~~g~~i~~v~~--~~~~~~Idtp~Dl~~a~~~~~~ 209 (214)
. |.|+.+.|.++++..... + ++++|....+ .++..... ...++++++|+||+.++.+++.
T Consensus 165 GiYv~~~~~l~~~~~~~~~~~~~~~~~~~d~i~~~----~~v~~~~~~~~~~~~~i~~~~~l~~~~~~~~~ 231 (448)
T PRK14357 165 GIYVFSGDFLLEVLPKIKNENAKGEYYLTDAVNFA----EKVRVVKTEDLLEITGVNTRIQLAWLEKQLRM 231 (448)
T ss_pred EEEEEEHHHHHHHHHhhCcCCCCCeEEHHHHHHhh----hheeEEecCCHHHEEccCCHHHHHHHHHHHHH
Confidence 4 888888777766543221 2 3455544333 23554433 2357889999999999887753
|
|
| >PRK14490 putative bifunctional molybdopterin-guanine dinucleotide biosynthesis protein MobB/MobA; Provisional | Back alignment and domain information |
|---|
Probab=99.65 E-value=2e-14 Score=120.37 Aligned_cols=177 Identities=11% Similarity=0.070 Sum_probs=104.7
Q ss_pred CCCCCCceeeeeCCeehHHHHHHHHhcCCCcCeEEEEeCCCchHHHHHHHHhcCCcEEEec-CCccHHHHHHHHHhhccc
Q 028081 1 MGANMPKQYLPLLGQPIALYSFYTFSRMVEVKEIVVVCDPSYSDIFEETKEKINVDLKFSL-PGKERQDSVYSGLQEVDF 79 (214)
Q Consensus 1 m~~~~~K~l~~l~gkpli~~~i~~~~~~~~~~~iiVv~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~sv~~al~~~~~ 79 (214)
|| .+|+|++++|||||.|+++++... +++|+|+++++....+ ..++..+..-. .+.++..++..|++...
T Consensus 188 mG--~~K~ll~~~Gk~ll~~~l~~l~~~--~~~vvV~~~~~~~~~~----~~~~v~~i~d~~~~~Gpl~gi~~al~~~~- 258 (369)
T PRK14490 188 MG--SDKALLSYHESNQLVHTAALLRPH--CQEVFISCRAEQAEQY----RSFGIPLITDSYLDIGPLGGLLSAQRHHP- 258 (369)
T ss_pred CC--CCcEEEEECCccHHHHHHHHHHhh--CCEEEEEeCCchhhHH----hhcCCcEEeCCCCCCCcHHHHHHHHHhCC-
Confidence 55 489999999999999999999753 6889998876642211 22343322211 13457888999987754
Q ss_pred CCCeEEEEcCCCCCCCHHHHHHHHHHHHhcCCeEEeeeccccEEEecCCCceeeecCccchhhhcCCcccChHHHHHHHH
Q 028081 80 NSELVCIHDSARPLVLSKDVQKVLMDALRVGAAVLGVPAKATIKEANSESFVVRTLDRKTLWEMQTPQVIKPDLLKKGFE 159 (214)
Q Consensus 80 ~~~~vl~~~~d~P~v~~~~i~~~i~~~~~~~~~i~~~~~~~~~~~~~~~g~v~~~~~r~~~~~~~~p~~f~~~~l~~~~~ 159 (214)
.+.++++.||+||+++++++.+++.......+++.. ...+|..... .-.|+...+..+..
T Consensus 259 -~~~~lv~~~DmP~i~~~~i~~L~~~~~~~~~~~~~~--------~~~~g~p~pl-----------~~~y~~~~~~~l~~ 318 (369)
T PRK14490 259 -DAAWLVVACDLPFLDEATLQQLVEGRNPFRFATAFR--------HPDSGRPEPL-----------CAIYEPKSRLRLLL 318 (369)
T ss_pred -CCcEEEEeCCcCCCCHHHHHHHHHhccCCCceEEEE--------cCCCCceEeE-----------EEeecHHHHHHHHH
Confidence 467899999999999999999998643222222111 0112321000 01233333333322
Q ss_pred HHHhcCCCCCcHHHHHHhCCCCeEEEe--cCCCCcccCCHHHHHHHHHHhhccc
Q 028081 160 LVNREGLEVTDDVSIVEHLKHPVYITE--GSYTNIKVTTPDDLLIAERILNLSS 211 (214)
Q Consensus 160 ~~~~~~~~~~d~~~~~~~~g~~i~~v~--~~~~~~~Idtp~Dl~~a~~~~~~~~ 211 (214)
... +|- .....+++..+ +..+. .+...++||||+||+.++..++.-+
T Consensus 319 ~~~-~gd--~~~~~~l~~~~--~~~v~~~~~~~f~NINTpeDl~~~~~~~~~~~ 367 (369)
T PRK14490 319 RHA-AGN--NSLRSFLATSR--IEELEPTDPEALQNINDPEEMDRAERALSTTK 367 (369)
T ss_pred HHH-hCC--ccHHHHHhhCC--eEEEcCCCchhcCCCCCHHHHHHHHHHHhhcC
Confidence 111 121 12233444433 33333 2345679999999999988776443
|
|
| >PRK00576 molybdopterin-guanine dinucleotide biosynthesis protein A; Provisional | Back alignment and domain information |
|---|
Probab=99.64 E-value=2.5e-14 Score=108.17 Aligned_cols=100 Identities=16% Similarity=0.221 Sum_probs=71.4
Q ss_pred CCCCCCceeeeeCC--eehHHHHHHHHhcCCCcCeEEEEeCCCchHHHHHHHHhcCCcEEE-ecCCccHHHHHHHHHhhc
Q 028081 1 MGANMPKQYLPLLG--QPIALYSFYTFSRMVEVKEIVVVCDPSYSDIFEETKEKINVDLKF-SLPGKERQDSVYSGLQEV 77 (214)
Q Consensus 1 m~~~~~K~l~~l~g--kpli~~~i~~~~~~~~~~~iiVv~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~sv~~al~~~ 77 (214)
||. +|.|++++| +|||+|+++++.. .+++|+|++++.. . . ...+..+.. ...+.+++.++..|+..+
T Consensus 1 mG~--dK~ll~~~g~~~~ll~~~~~~l~~--~~~~iivv~~~~~-~-~----~~~~~~~i~d~~~g~gpl~~~~~gl~~~ 70 (178)
T PRK00576 1 MGR--DKATLPLPGGTTTLVEHVVGIVGQ--RCAPVFVMAAPGQ-P-L----PELPAPVLRDELRGLGPLPATGRGLRAA 70 (178)
T ss_pred CCC--CCEeeEeCCCCcCHHHHHHHHHhh--cCCEEEEECCCCc-c-c----ccCCCCEeccCCCCCCcHHHHHHHHHHH
Confidence 664 999999999 9999999998763 4799999987643 1 1 122222211 112345677777777654
Q ss_pred -ccCCCeEEEEcCCCCCCCHHHHHHHHHHHHhcC
Q 028081 78 -DFNSELVCIHDSARPLVLSKDVQKVLMDALRVG 110 (214)
Q Consensus 78 -~~~~~~vl~~~~d~P~v~~~~i~~~i~~~~~~~ 110 (214)
....++++++.||+||+++++++++++.+...+
T Consensus 71 ~~~~~~~~lv~~~DmP~i~~~~i~~L~~~~~~~~ 104 (178)
T PRK00576 71 AEAGARLAFVCAVDMPYLTVELIDDLARPAAQTD 104 (178)
T ss_pred HhcCCCEEEEEeCCCCCCCHHHHHHHHHHhhcCC
Confidence 223689999999999999999999998765443
|
|
| >PRK00560 molybdopterin-guanine dinucleotide biosynthesis protein A; Provisional | Back alignment and domain information |
|---|
Probab=99.64 E-value=2e-14 Score=110.32 Aligned_cols=165 Identities=12% Similarity=0.115 Sum_probs=101.9
Q ss_pred CCCceeeeeCC-eehHHHHHHHHhcCCCcCeEEEEeCCCchHHHHHHHHhcCCcEEE--ecCCccHHHHHHHHHhhcccC
Q 028081 4 NMPKQYLPLLG-QPIALYSFYTFSRMVEVKEIVVVCDPSYSDIFEETKEKINVDLKF--SLPGKERQDSVYSGLQEVDFN 80 (214)
Q Consensus 4 ~~~K~l~~l~g-kpli~~~i~~~~~~~~~~~iiVv~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~sv~~al~~~~~~ 80 (214)
+.+|++++++| +|||+|+++.+... +++|+|+++++. + .++..+.. ..+..++..++..++....
T Consensus 23 G~~K~ll~~~g~~~ll~~~i~~l~~~--~~~vvvv~~~~~---~-----~~~~~~v~d~~~~~~gpl~gi~~~l~~~~-- 90 (196)
T PRK00560 23 GENKALLPFGSYSSLLEYQYTRLLKL--FKKVYISTKDKK---F-----EFNAPFLLEKESDLFSPLFGIINAFLTLQ-- 90 (196)
T ss_pred CCCceEEEeCCCCcHHHHHHHHHHHh--CCEEEEEECchh---c-----ccCCcEEecCCCCCCCcHHHHHHHHHhcC--
Confidence 35899999999 99999999999864 689999988621 1 11111111 1122344566666765543
Q ss_pred CCeEEEEcCCCCCCCHHHHHHHHHHHHhcCCeEEeeeccccEEEecCCCceeeecCccchhhhcCCc--ccChHHHHHHH
Q 028081 81 SELVCIHDSARPLVLSKDVQKVLMDALRVGAAVLGVPAKATIKEANSESFVVRTLDRKTLWEMQTPQ--VIKPDLLKKGF 158 (214)
Q Consensus 81 ~~~vl~~~~d~P~v~~~~i~~~i~~~~~~~~~i~~~~~~~~~~~~~~~g~v~~~~~r~~~~~~~~p~--~f~~~~l~~~~ 158 (214)
.++++++.||+||++++++++++.. .+..+ +.+.. ++.. .|- .|++..+..+.
T Consensus 91 ~~~vlv~~~D~P~i~~~~i~~l~~~---~~~~~-~~~~~--------~~~~-------------~Pl~al~~~~~~~~l~ 145 (196)
T PRK00560 91 TPEIFFISVDTPFVSFESIKKLCGK---ENFSV-TYAKS--------PTKE-------------HYLISLWHQSLLNALI 145 (196)
T ss_pred CCeEEEEecCcCcCCHHHHHHHHhc---CCCCE-EEEcc--------CCce-------------eeeEEEEcHHHHHHHH
Confidence 6889999999999999999998532 12111 12211 1110 244 67776666554
Q ss_pred HHHHhcCCCCCcHHHHHHhCCCCeEEEe--cCCCCcccCCHHHHHHHHHHhhcc
Q 028081 159 ELVNREGLEVTDDVSIVEHLKHPVYITE--GSYTNIKVTTPDDLLIAERILNLS 210 (214)
Q Consensus 159 ~~~~~~~~~~~d~~~~~~~~g~~i~~v~--~~~~~~~Idtp~Dl~~a~~~~~~~ 210 (214)
+.....+ .....+++..+ +..+. .+...+|||||+||+.++..++.+
T Consensus 146 ~~l~~~~---~~~~~ll~~~~--~~~v~~~~~~~~~dinT~eDl~~~~~~~~~~ 194 (196)
T PRK00560 146 YALKTQN---YRLSDLVKNTS--SQAVHFEDEEEFLNLNTLKDYELALQILKSR 194 (196)
T ss_pred HHHHhCC---ccHHHHHHHCC--cEEecCCCCccccCCCCHHHHHHHHHHHHHh
Confidence 3332221 12234555554 33333 334568999999999998776543
|
|
| >PRK09451 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.63 E-value=2.5e-14 Score=123.26 Aligned_cols=199 Identities=15% Similarity=0.173 Sum_probs=127.2
Q ss_pred CCCCCCceeeeeCCeehHHHHHHHHhcCCCcCeEEEEeCCCchHHHHHHHHhcCCcEEEecC--CccHHHHHHHHHhhcc
Q 028081 1 MGANMPKQYLPLLGQPIALYSFYTFSRMVEVKEIVVVCDPSYSDIFEETKEKINVDLKFSLP--GKERQDSVYSGLQEVD 78 (214)
Q Consensus 1 m~~~~~K~l~~l~gkpli~~~i~~~~~~~~~~~iiVv~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~sv~~al~~~~ 78 (214)
|+.++||+|++++|||||+|+++.+.+++ +++++|++++.. +.+++.+... ++.++.. ..+..++++.|+..+.
T Consensus 19 l~~~~pK~l~~i~gkpli~~~i~~l~~~g-i~~i~vv~~~~~-~~i~~~~~~~--~~~~i~~~~~~Gt~~al~~a~~~l~ 94 (456)
T PRK09451 19 MYSDLPKVLHTLAGKPMVQHVIDAANELG-AQHVHLVYGHGG-DLLKQTLADE--PLNWVLQAEQLGTGHAMQQAAPFFA 94 (456)
T ss_pred CCCCCChhcceeCChhHHHHHHHHHHhcC-CCcEEEEECCCH-HHHHHhhccC--CcEEEECCCCCCcHHHHHHHHHhhc
Confidence 44567999999999999999999998875 899999998764 4455544322 3334322 2234788888888775
Q ss_pred cCCCeEEEEcCCCCCCCHHHHHHHHHHHHhcCCeEEeeeccccEE---EecCCCceeeecCccch-------hhhcC-Cc
Q 028081 79 FNSELVCIHDSARPLVLSKDVQKVLMDALRVGAAVLGVPAKATIK---EANSESFVVRTLDRKTL-------WEMQT-PQ 147 (214)
Q Consensus 79 ~~~~~vl~~~~d~P~v~~~~i~~~i~~~~~~~~~i~~~~~~~~~~---~~~~~g~v~~~~~r~~~-------~~~~~-p~ 147 (214)
+.+.+++++||+||+++++++++++.....+.++...+..++.. ..+++|.+.+..+.... ....+ -+
T Consensus 95 -~~~~vlV~~gD~P~i~~~~i~~l~~~~~~~~~~i~~~~~~~~~~yG~v~~~~g~V~~~~EKp~~~~~~~~~~~~~~GiY 173 (456)
T PRK09451 95 -DDEDILMLYGDVPLISVETLQRLRDAKPQGGIGLLTVKLDNPTGYGRITRENGKVVGIVEQKDATDEQRQIQEINTGIL 173 (456)
T ss_pred -cCCcEEEEeCCcccCCHHHHHHHHHHhhcCCEEEEEEEcCCCCCceEEEecCCeEEEEEECCCCChHHhhccEEEEEEE
Confidence 24679999999999999999999987655554555556555411 12234566544332110 11122 37
Q ss_pred ccChHHHHHHHHHHHh----cCCCCCcHHHHHHhCCCCeEEEec--------CCCCcccCCHHHHHHHH
Q 028081 148 VIKPDLLKKGFELVNR----EGLEVTDDVSIVEHLKHPVYITEG--------SYTNIKVTTPDDLLIAE 204 (214)
Q Consensus 148 ~f~~~~l~~~~~~~~~----~~~~~~d~~~~~~~~g~~i~~v~~--------~~~~~~Idtp~Dl~~a~ 204 (214)
.|+.+.|.++++.... ..++++|....+...|.++..... ...+.++.++++|..++
T Consensus 174 i~~~~~l~~~l~~~~~~~~~~e~~l~d~i~~~i~~g~~v~~~~~~~~~~~~G~~~~~di~~~~~y~~~~ 242 (456)
T PRK09451 174 VANGADLKRWLAKLTNNNAQGEYYITDIIALAHQEGREIVAVHPQRLSEVEGVNNRLQLARLERVYQAE 242 (456)
T ss_pred EEEHHHHHHHHHhcCCccccCceeHHHHHHHHHHCCCeEEEEecCCHHHhcCCCCHHHHHHHHHHHHHH
Confidence 7887777766654321 225566665566667788876632 11245677777666543
|
|
| >cd04189 G1P_TT_long G1P_TT_long represents the long form of glucose-1-phosphate thymidylyltransferase | Back alignment and domain information |
|---|
Probab=99.62 E-value=4.9e-14 Score=111.06 Aligned_cols=198 Identities=18% Similarity=0.252 Sum_probs=125.8
Q ss_pred CCCCceeeeeCCeehHHHHHHHHhcCCCcCeEEEEeCCCchHHHHHHHHh---cCCcEEEecCC--ccHHHHHHHHHhhc
Q 028081 3 ANMPKQYLPLLGQPIALYSFYTFSRMVEVKEIVVVCDPSYSDIFEETKEK---INVDLKFSLPG--KERQDSVYSGLQEV 77 (214)
Q Consensus 3 ~~~~K~l~~l~gkpli~~~i~~~~~~~~~~~iiVv~~~~~~~~~~~~~~~---~~~~~~~~~~~--~~~~~sv~~al~~~ 77 (214)
.+.||+|++++|+|||+|+++.+.+++ +++|+|++++.. +.+.+.++. ++..+.++.+. .+..+|++.|+..+
T Consensus 19 ~~~pK~l~~i~g~~li~~~l~~l~~~~-~~~i~vv~~~~~-~~~~~~~~~~~~~~~~i~~~~~~~~~g~~~sl~~a~~~i 96 (236)
T cd04189 19 YTRPKQLIPVAGKPIIQYAIEDLREAG-IEDIGIVVGPTG-EEIKEALGDGSRFGVRITYILQEEPLGLAHAVLAARDFL 96 (236)
T ss_pred cCCCceeeEECCcchHHHHHHHHHHCC-CCEEEEEcCCCH-HHHHHHhcchhhcCCeEEEEECCCCCChHHHHHHHHHhc
Confidence 468999999999999999999999875 899999998854 455555543 23344444332 23478899998877
Q ss_pred ccCCCeEEEEcCCCCCCCHHHHHHHHHHHHhcC--CeEEeeeccccE----EEecCCCceeeecCcc----chhhhcCCc
Q 028081 78 DFNSELVCIHDSARPLVLSKDVQKVLMDALRVG--AAVLGVPAKATI----KEANSESFVVRTLDRK----TLWEMQTPQ 147 (214)
Q Consensus 78 ~~~~~~vl~~~~d~P~v~~~~i~~~i~~~~~~~--~~i~~~~~~~~~----~~~~~~g~v~~~~~r~----~~~~~~~p~ 147 (214)
. + +-++++.||..+ +. .+..+++.+...+ .++++.+..++. ..++ +|.+..+.+.. ..+..-.-+
T Consensus 97 ~-~-~~~li~~~D~~~-~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~d-~~~v~~~~ek~~~~~~~~~~~Giy 171 (236)
T cd04189 97 G-D-EPFVVYLGDNLI-QE-GISPLVRDFLEEDADASILLAEVEDPRRFGVAVVD-DGRIVRLVEKPKEPPSNLALVGVY 171 (236)
T ss_pred C-C-CCEEEEECCeec-Cc-CHHHHHHHHHhcCCceEEEEEECCCcccceEEEEc-CCeEEEEEECCCCCCCCEEEEEEE
Confidence 5 2 346778899976 43 4667777665433 345555654431 1233 34554433211 001111225
Q ss_pred ccChHHHHHHHHHHHh---cCCCCCcHHHHHHhCCCCeEEEecCCCCcccCCHHHHHHHHHHhh
Q 028081 148 VIKPDLLKKGFELVNR---EGLEVTDDVSIVEHLKHPVYITEGSYTNIKVTTPDDLLIAERILN 208 (214)
Q Consensus 148 ~f~~~~l~~~~~~~~~---~~~~~~d~~~~~~~~g~~i~~v~~~~~~~~Idtp~Dl~~a~~~~~ 208 (214)
.|+.+.+. .+..... ..+++++....+...|.+|..++.+..+++|+||+||..|+..+-
T Consensus 172 ~~~~~~~~-~l~~~~~~~~~~~~~~d~~~~~i~~g~~v~~~~~~~~~~~i~t~~dl~~a~~~~l 234 (236)
T cd04189 172 AFTPAIFD-AISRLKPSWRGELEITDAIQWLIDRGRRVGYSIVTGWWKDTGTPEDLLEANRLLL 234 (236)
T ss_pred EeCHHHHH-HHHhcCCCCCCeEEHHHHHHHHHHcCCcEEEEEcCceEEeCCCHHHHHHHHHHHH
Confidence 56655443 3332211 124566666666667888888776667999999999999998753
|
This family is the long form of Glucose-1-phosphate thymidylyltransferase. Glucose-1-phosphate thymidylyltransferase catalyses the formation of dTDP-glucose, from dTTP and glucose 1-phosphate. It is the first enzyme in the biosynthesis of dTDP-L-rhamnose, a cell wall constituent and a feedback inhibitor of the enzyme.There are two forms of Glucose-1-phosphate thymidylyltransferase in bacteria and archeae; short form and long form. The long form, which has an extra 50 amino acids c-terminal, is found in many species for which it serves as a sugar-activating enzyme for antibiotic biosynthesis and or other, unknown pathways, and in which dTDP-L-rhamnose is not necessarily produced.The long from enzymes also have a left-handed parallel helix domain at the c-terminus, whereas, th eshort form enzymes do not have this domain. The homotetrameric, feedback inhibited short form is found in |
| >PF02348 CTP_transf_3: Cytidylyltransferase; InterPro: IPR003329 Synonym(s): CMP-N-acetylneuraminic acid synthetase Acylneuraminate cytidylyltransferase (2 | Back alignment and domain information |
|---|
Probab=99.62 E-value=4.3e-15 Score=115.69 Aligned_cols=107 Identities=19% Similarity=0.310 Sum_probs=79.0
Q ss_pred CCC-CCC-ceeeeeCCeehHHHHHHHHhcCCCcCeEEEEeCCCchHHHHHHHHhcCCcEEEecCCcc-HHHHHHHHHhhc
Q 028081 1 MGA-NMP-KQYLPLLGQPIALYSFYTFSRMVEVKEIVVVCDPSYSDIFEETKEKINVDLKFSLPGKE-RQDSVYSGLQEV 77 (214)
Q Consensus 1 m~~-~~~-K~l~~l~gkpli~~~i~~~~~~~~~~~iiVv~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~sv~~al~~~ 77 (214)
||| +.| |+|++|+|||||+|+++++++++.+++|+|+|+++. +.+.+..+|..+.+..+... ..+....++...
T Consensus 8 ~gS~rlp~Knl~~l~gkpLi~~~i~~a~~s~~~d~IvVaTd~~~---i~~~~~~~g~~v~~~~~~~~~~~~r~~~~~~~~ 84 (217)
T PF02348_consen 8 GGSKRLPGKNLKPLGGKPLIEYVIERAKQSKLIDEIVVATDDEE---IDDIAEEYGAKVIFRRGSLADDTDRFIEAIKHF 84 (217)
T ss_dssp SSSSSSTTGGGSEETTEEHHHHHHHHHHHTTTTSEEEEEESSHH---HHHHHHHTTSEEEE--TTSSSHHHHHHHHHHHH
T ss_pred CCCCCCCcchhhHhCCccHHHHHHHHHHhCCCCCeEEEeCCCHH---HHHHHHHcCCeeEEcChhhcCCcccHHHHHHHh
Confidence 576 466 999999999999999999999999999999999865 45677788876655544222 233334444443
Q ss_pred cc-CCCeEEEEcCCCCCCCHHHHHHHHHHHHhcC
Q 028081 78 DF-NSELVCIHDSARPLVLSKDVQKVLMDALRVG 110 (214)
Q Consensus 78 ~~-~~~~vl~~~~d~P~v~~~~i~~~i~~~~~~~ 110 (214)
.. +.++++.++||.||++++.++++++.+.+..
T Consensus 85 ~~~~~~~vv~~~~d~Pll~~~~i~~~i~~~~~~~ 118 (217)
T PF02348_consen 85 LADDEDIVVRLQGDSPLLDPTSIDRAIEDIREAN 118 (217)
T ss_dssp TCSTTSEEEEESTTETT--HHHHHHHHHHHHHST
T ss_pred hhhHHhhccccCCeeeECCHHHHHHHHHHHhcCc
Confidence 21 2358999999999999999999999887653
|
7.7.43 from EC) (CMP-NeuAc synthetase) catalyzes the reaction of CTP and NeuAc to form CMP-NeuAc, which is the nucleotide sugar donor used by sialyltransferases []. The outer membrane lipooligosaccharides of some microorganisms contain terminal sialic acid attached to N-acetyllactosamine and so this modification may be important in pathogenesis.; GO: 0009103 lipopolysaccharide biosynthetic process; PDB: 3K8D_C 1VH1_B 3K8E_C 1QWJ_A 3EWI_A 1VIC_B 3DUV_A 1VH3_C 3TQD_A 2Y6P_C .... |
| >COG0746 MobA Molybdopterin-guanine dinucleotide biosynthesis protein A [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.62 E-value=1.1e-13 Score=105.37 Aligned_cols=169 Identities=18% Similarity=0.229 Sum_probs=103.2
Q ss_pred CCceeeeeCCeehHHHHHHHHhcCCCcCeEEEEeCCCchHHHHHHHHhcCCcEEE-ecCCccHHHHHHHHHhhcccCCCe
Q 028081 5 MPKQYLPLLGQPIALYSFYTFSRMVEVKEIVVVCDPSYSDIFEETKEKINVDLKF-SLPGKERQDSVYSGLQEVDFNSEL 83 (214)
Q Consensus 5 ~~K~l~~l~gkpli~~~i~~~~~~~~~~~iiVv~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~sv~~al~~~~~~~~~ 83 (214)
.+|.+.+++|+|||+|++++++.. ++.++|+.+... +. ...++.++.. ...+.++.++++.|++... .++
T Consensus 19 ~dK~l~~~~g~~lie~v~~~L~~~--~~~vvi~~~~~~-~~----~~~~g~~vv~D~~~~~GPL~Gi~~al~~~~--~~~ 89 (192)
T COG0746 19 RDKALLPLNGRPLIEHVIDRLRPQ--VDVVVISANRNQ-GR----YAEFGLPVVPDELPGFGPLAGILAALRHFG--TEW 89 (192)
T ss_pred cccccceeCCeEHHHHHHHHhccc--CCEEEEeCCCch-hh----hhccCCceeecCCCCCCCHHHHHHHHHhCC--CCe
Confidence 589999999999999999999864 465555554442 21 2334544322 1122377999999999886 689
Q ss_pred EEEEcCCCCCCCHHHHHHHHHHHHhcCCeEEeeeccccEEEecCCCceeeecCccchhhhcCCcccChHHHHHHHHHHHh
Q 028081 84 VCIHDSARPLVLSKDVQKVLMDALRVGAAVLGVPAKATIKEANSESFVVRTLDRKTLWEMQTPQVIKPDLLKKGFELVNR 163 (214)
Q Consensus 84 vl~~~~d~P~v~~~~i~~~i~~~~~~~~~i~~~~~~~~~~~~~~~g~v~~~~~r~~~~~~~~p~~f~~~~l~~~~~~~~~ 163 (214)
++++.||+||++++.+++++..+.+.++++.. +. .+|.+.... -.+ ...+...+.....
T Consensus 90 ~~v~~~D~P~i~~~lv~~l~~~~~~~~~~~~~-~~--------~~g~~~Pl~-----------aly-~~~l~~~l~~~l~ 148 (192)
T COG0746 90 VLVLPCDMPFIPPELVERLLSAFKQTGAAIVP-AH--------DDGRLEPLF-----------ALY-HRALLPALEEYLA 148 (192)
T ss_pred EEEEecCCCCCCHHHHHHHHHhhcccCCcEEE-eC--------CCCceeeEE-----------EEe-hHHHHHHHHHHHH
Confidence 99999999999999999999987654432211 11 134322110 112 2223333332222
Q ss_pred cCCCCCcHHHHHHhCCCCeEEEecCC--CCcccCCHHHHHHHHH
Q 028081 164 EGLEVTDDVSIVEHLKHPVYITEGSY--TNIKVTTPDDLLIAER 205 (214)
Q Consensus 164 ~~~~~~d~~~~~~~~g~~i~~v~~~~--~~~~Idtp~Dl~~a~~ 205 (214)
++- .....++++.+.....+.... ..+.||||+||..++.
T Consensus 149 ~g~--~~~~~~l~~~~~~~v~~~~~~~~~F~NiNtpeDL~~~~~ 190 (192)
T COG0746 149 KGE--RRLSALLERLGTEYVEFEDLEEDSFFNINTPEDLARARE 190 (192)
T ss_pred hCC--ccHHHHHHHCCcEEEecCcCCcccccccCCHHHHHHHhc
Confidence 221 112245555553332233333 6788999999998764
|
|
| >PF12804 NTP_transf_3: MobA-like NTP transferase domain; PDB: 3FWW_A 2XME_D 2XMH_C 2DPW_A 2WAW_A 2OI5_B 1HV9_B 1FWY_A 2OI6_A 2OI7_B | Back alignment and domain information |
|---|
Probab=99.61 E-value=1.8e-14 Score=106.94 Aligned_cols=104 Identities=24% Similarity=0.364 Sum_probs=82.1
Q ss_pred CCCCCCceeeeeCCeehHHHHHHHHhcCCCcCeEEEEeCCCchHHHHHHHHhcCCcEEEec-CCccHHHHHHHHHhhccc
Q 028081 1 MGANMPKQYLPLLGQPIALYSFYTFSRMVEVKEIVVVCDPSYSDIFEETKEKINVDLKFSL-PGKERQDSVYSGLQEVDF 79 (214)
Q Consensus 1 m~~~~~K~l~~l~gkpli~~~i~~~~~~~~~~~iiVv~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~sv~~al~~~~~ 79 (214)
||+ ||+|++++|+|||+|+++++.+++ +++|+|+++++. +...+..++..+.... .+.+...|++.|+..+.
T Consensus 12 mg~--~K~l~~i~g~~li~~~l~~l~~~~-~~~Ivvv~~~~~---~~~~~~~~~~~~v~~~~~~~G~~~sl~~a~~~~~- 84 (160)
T PF12804_consen 12 MGG--PKALLPIGGKPLIERVLEALREAG-VDDIVVVTGEEE---IYEYLERYGIKVVVDPEPGQGPLASLLAALSQLP- 84 (160)
T ss_dssp GTS--CGGGSEETTEEHHHHHHHHHHHHT-ESEEEEEESTHH---HHHHHTTTTSEEEE-STSSCSHHHHHHHHHHTST-
T ss_pred CCC--CccceeECCccHHHHHHHHhhccC-CceEEEecChHH---HHHHHhccCceEEEeccccCChHHHHHHHHHhcc-
Confidence 554 999999999999999999999886 899999999842 4444555554443322 14678999999999884
Q ss_pred CCCeEEEEcCCCCCCCHHHHHHHHHHHHhcCC
Q 028081 80 NSELVCIHDSARPLVLSKDVQKVLMDALRVGA 111 (214)
Q Consensus 80 ~~~~vl~~~~d~P~v~~~~i~~~i~~~~~~~~ 111 (214)
..+.++++.||+||+++++++++++.+.+.+.
T Consensus 85 ~~~~vlv~~~D~p~~~~~~l~~l~~~~~~~~~ 116 (160)
T PF12804_consen 85 SSEPVLVLPCDQPFLSPELLRRLLEALEKSPA 116 (160)
T ss_dssp TSSEEEEEETTETTS-HHHHHHHHHHHHHTTT
T ss_pred cCCCcEEEeCCccccCHHHHHHHHHHHhccCC
Confidence 36889999999999999999999999875444
|
... |
| >TIGR01207 rmlA glucose-1-phosphate thymidylyltransferase, short form | Back alignment and domain information |
|---|
Probab=99.61 E-value=8e-14 Score=112.84 Aligned_cols=198 Identities=16% Similarity=0.189 Sum_probs=123.7
Q ss_pred CCCceeeeeCCeehHHHHHHHHhcCCCcCeEEEEeCCCchHHHHHHHHh---cCCcEEEecC--CccHHHHHHHHHhhcc
Q 028081 4 NMPKQYLPLLGQPIALYSFYTFSRMVEVKEIVVVCDPSYSDIFEETKEK---INVDLKFSLP--GKERQDSVYSGLQEVD 78 (214)
Q Consensus 4 ~~~K~l~~l~gkpli~~~i~~~~~~~~~~~iiVv~~~~~~~~~~~~~~~---~~~~~~~~~~--~~~~~~sv~~al~~~~ 78 (214)
.+||+|+|++|||||.|+++.+..++ +++|+|++.+...+.+++.... ++.++.++.. ..+..+++..|...+.
T Consensus 19 ~~pK~Llpv~gkPmI~~~L~~l~~aG-i~~I~iv~~~~~~~~~~~~lg~g~~~g~~i~~~~q~~~~Gta~al~~a~~~l~ 97 (286)
T TIGR01207 19 AVSKQLLPIYDKPMIYYPLSTLMLAG-IRDILIISTPQDTPRFQQLLGDGSQWGVNLSYAVQPSPDGLAQAFIIGEDFIG 97 (286)
T ss_pred CCCceeeEECCEEhHHHHHHHHHHCC-CCEEEEEecCCcHHHHHHHhccccccCceEEEEEccCCCCHHHHHHHHHHHhC
Confidence 68999999999999999999999885 8999887765443445555432 3444544433 2334788888888885
Q ss_pred cCCCeEEEEcCCCCCCCHHHHHHHHHHHHhc--CCeEEeeecccc----EEEecCCCceeeecCc-----cchhhhcC-C
Q 028081 79 FNSELVCIHDSARPLVLSKDVQKVLMDALRV--GAAVLGVPAKAT----IKEANSESFVVRTLDR-----KTLWEMQT-P 146 (214)
Q Consensus 79 ~~~~~vl~~~~d~P~v~~~~i~~~i~~~~~~--~~~i~~~~~~~~----~~~~~~~g~v~~~~~r-----~~~~~~~~-p 146 (214)
. +.++++.+|.+|.. ..+..+++.+... ++.+.+.++.++ +...+++|.+..+.++ +++ ..+ -
T Consensus 98 ~--~~~~li~gD~i~~~-~~l~~ll~~~~~~~~~~ti~~~~v~~p~~yGvv~~d~~g~V~~i~EKp~~~~s~~--~~~Gi 172 (286)
T TIGR01207 98 G--DPSALVLGDNIFYG-HDLSDLLKRAAARESGATVFAYQVSDPERYGVVEFDSNGRAISIEEKPAQPKSNY--AVTGL 172 (286)
T ss_pred C--CCEEEEECCEeccc-cCHHHHHHHHHhcCCCcEEEEEEccCHHHCceEEECCCCeEEEEEECCCCCCCCE--EEEEE
Confidence 2 33455569999854 5788888876543 344555666554 2223445666544321 211 112 3
Q ss_pred cccChHHHHHHHHHHHh---cCCCCCcHHHHHHhCCCCeEEEecCC-CCcccCCHHHHHHHHHHhh
Q 028081 147 QVIKPDLLKKGFELVNR---EGLEVTDDVSIVEHLKHPVYITEGSY-TNIKVTTPDDLLIAERILN 208 (214)
Q Consensus 147 ~~f~~~~l~~~~~~~~~---~~~~~~d~~~~~~~~g~~i~~v~~~~-~~~~Idtp~Dl~~a~~~~~ 208 (214)
+.|+... .+.+..... ..+++||....+...|.-........ .|+||.||+||..|+..++
T Consensus 173 Yi~~~~i-~~~l~~~~~~~~ge~eitdv~~~~l~~g~l~v~~~~~g~~W~DiGt~~~l~~A~~~~~ 237 (286)
T TIGR01207 173 YFYDNRV-VEIARQLKPSARGELEITDLNRVYLEEGRLSVELLGRGYAWLDTGTHDSLLEASNFIQ 237 (286)
T ss_pred EEEchHH-HHHHhhcCCCCCCcEeHHHHHHHHHHcCCcEEEEecCCCEEEeCCCHHHHHHHHHHHH
Confidence 6677654 333333211 23567776666555563222222333 4999999999999988775
|
This model describes a tightly conserved but broadly distributed subfamily (here designated as short form) of known and putative bacterial glucose-1-phosphate thymidylyltransferases. It is well characterized in several species as the first of four enzymes involved in the biosynthesis of dTDP-L-rhamnose, a cell wall constituent and a feedback inhibitor of the enzyme. |
| >COG2266 GTP:adenosylcobinamide-phosphate guanylyltransferase [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.61 E-value=7.2e-14 Score=102.27 Aligned_cols=96 Identities=18% Similarity=0.233 Sum_probs=79.8
Q ss_pred CCceeeeeCCeehHHHHHHHHhcCCCcCeEEEEeCCCchHHHHHHHHhcCCcEEEecCCccHHHHHHHHHhhcccCCCeE
Q 028081 5 MPKQYLPLLGQPIALYSFYTFSRMVEVKEIVVVCDPSYSDIFEETKEKINVDLKFSLPGKERQDSVYSGLQEVDFNSELV 84 (214)
Q Consensus 5 ~~K~l~~l~gkpli~~~i~~~~~~~~~~~iiVv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sv~~al~~~~~~~~~v 84 (214)
.-|+|++++|||||.|+++++++ .+++|+|++++.. ..+++.+...+.++...+ |.+...-+..+++.+. .-+
T Consensus 17 ~EKPlleV~GkpLI~~v~~al~~--~~d~i~v~isp~t-p~t~~~~~~~gv~vi~tp-G~GYv~Dl~~al~~l~---~P~ 89 (177)
T COG2266 17 PEKPLLEVCGKPLIDRVLEALRK--IVDEIIVAISPHT-PKTKEYLESVGVKVIETP-GEGYVEDLRFALESLG---TPI 89 (177)
T ss_pred CcCcchhhCCccHHHHHHHHHHh--hcCcEEEEeCCCC-HhHHHHHHhcCceEEEcC-CCChHHHHHHHHHhcC---Cce
Confidence 34999999999999999999987 4799999999876 567777777665554344 4566788899999886 368
Q ss_pred EEEcCCCCCCCHHHHHHHHHHHH
Q 028081 85 CIHDSARPLVLSKDVQKVLMDAL 107 (214)
Q Consensus 85 l~~~~d~P~v~~~~i~~~i~~~~ 107 (214)
++..+|.||+.+.+|+.+++.+.
T Consensus 90 lvvsaDLp~l~~~~i~~vi~~~~ 112 (177)
T COG2266 90 LVVSADLPFLNPSIIDSVIDAAA 112 (177)
T ss_pred EEEecccccCCHHHHHHHHHHHh
Confidence 99999999999999999999876
|
|
| >PRK15480 glucose-1-phosphate thymidylyltransferase RfbA; Provisional | Back alignment and domain information |
|---|
Probab=99.60 E-value=1.3e-13 Score=111.76 Aligned_cols=199 Identities=15% Similarity=0.215 Sum_probs=125.4
Q ss_pred CCCceeeeeCCeehHHHHHHHHhcCCCcCeEEEEeCCCchHHHHHHHHh---cCCcEEEecC--CccHHHHHHHHHhhcc
Q 028081 4 NMPKQYLPLLGQPIALYSFYTFSRMVEVKEIVVVCDPSYSDIFEETKEK---INVDLKFSLP--GKERQDSVYSGLQEVD 78 (214)
Q Consensus 4 ~~~K~l~~l~gkpli~~~i~~~~~~~~~~~iiVv~~~~~~~~~~~~~~~---~~~~~~~~~~--~~~~~~sv~~al~~~~ 78 (214)
.+||+|+|++|||||.|.++.+..++ +++|+|++.+...+.++++..+ ++.++.++.. ..+..+++..|...+.
T Consensus 23 ~~pK~Llpv~gkPmI~~~l~~l~~aG-i~~I~ii~~~~~~~~~~~~l~~g~~~g~~i~y~~q~~~~Gta~Al~~a~~~i~ 101 (292)
T PRK15480 23 AVSKQLLPIYDKPMIYYPLSTLMLAG-IRDILIISTPQDTPRFQQLLGDGSQWGLNLQYKVQPSPDGLAQAFIIGEEFIG 101 (292)
T ss_pred CCCceEeEECCEEHHHHHHHHHHHCC-CCEEEEEecCCchHHHHHHHcCccccCceeEEEECCCCCCHHHHHHHHHHHhC
Confidence 68999999999999999999999885 8999877665433445555432 3444555433 2234677888888875
Q ss_pred cCCCeEEEEcCCCCCCCHHHHHHHHHHHHhc--CCeEEeeecccc----EEEecCCCceeeecCc-----cchhhhcCCc
Q 028081 79 FNSELVCIHDSARPLVLSKDVQKVLMDALRV--GAAVLGVPAKAT----IKEANSESFVVRTLDR-----KTLWEMQTPQ 147 (214)
Q Consensus 79 ~~~~~vl~~~~d~P~v~~~~i~~~i~~~~~~--~~~i~~~~~~~~----~~~~~~~g~v~~~~~r-----~~~~~~~~p~ 147 (214)
. .+ ++++.||.+|.. ..+..+++.+... ++.+.+.++.++ +...+++|.+..+.+. +++ ..-.-+
T Consensus 102 ~-~~-~~lv~gD~i~~~-~~l~~ll~~~~~~~~~~tv~~~~v~~p~~yGvv~~d~~g~v~~i~EKP~~p~s~~-a~~GiY 177 (292)
T PRK15480 102 G-DD-CALVLGDNIFYG-HDLPKLMEAAVNKESGATVFAYHVNDPERYGVVEFDQNGTAISLEEKPLQPKSNY-AVTGLY 177 (292)
T ss_pred C-CC-EEEEECCeeeec-cCHHHHHHHHHhCCCCeEEEEEEcCCcccCcEEEECCCCcEEEEEECCCCCCCCE-EEEEEE
Confidence 2 34 455669998864 4688888877543 344445566554 2223445666543221 221 111236
Q ss_pred ccChHHHHHHHHHHHh---cCCCCCcHHHHHHhCCCCeEEEecCC-CCcccCCHHHHHHHHHHhh
Q 028081 148 VIKPDLLKKGFELVNR---EGLEVTDDVSIVEHLKHPVYITEGSY-TNIKVTTPDDLLIAERILN 208 (214)
Q Consensus 148 ~f~~~~l~~~~~~~~~---~~~~~~d~~~~~~~~g~~i~~v~~~~-~~~~Idtp~Dl~~a~~~~~ 208 (214)
.|+...+ +..+.... .++++||....+.+.|.......... .|+||.||+||..|+..++
T Consensus 178 ~~~~~v~-~~~~~~~~~~~ge~~itd~~~~~l~~g~~~~~~~~~g~~W~DiGt~~~l~~a~~~~~ 241 (292)
T PRK15480 178 FYDNDVV-EMAKNLKPSARGELEITDINRIYMEQGRLSVAMMGRGYAWLDTGTHQSLIEASNFIA 241 (292)
T ss_pred EEChHHH-HHHhhcCCCCCCeeEhHHHHHHHHhcCCeEEEEecCCcEEECCCCHHHHHHHHHHHH
Confidence 6776544 33332211 23678877666666665443344444 5999999999999998876
|
|
| >cd02524 G1P_cytidylyltransferase G1P_cytidylyltransferase catalyzes the production of CDP-D-Glucose | Back alignment and domain information |
|---|
Probab=99.58 E-value=3.3e-13 Score=107.58 Aligned_cols=200 Identities=9% Similarity=0.008 Sum_probs=121.4
Q ss_pred CCCCceeeeeCCeehHHHHHHHHhcCCCcCeEEEEeCCCchHHHHHHHHhc---CCcEEE---------ec---------
Q 028081 3 ANMPKQYLPLLGQPIALYSFYTFSRMVEVKEIVVVCDPSYSDIFEETKEKI---NVDLKF---------SL--------- 61 (214)
Q Consensus 3 ~~~~K~l~~l~gkpli~~~i~~~~~~~~~~~iiVv~~~~~~~~~~~~~~~~---~~~~~~---------~~--------- 61 (214)
..+||+|++++|+|||.|+++.+.+++ +++|+|++++.. +.+++.+.+. +..+.+ ..
T Consensus 17 ~~~pK~llpv~~~p~i~~~~~~~~~~g-i~~i~iv~~~~~-~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 94 (253)
T cd02524 17 ELKPKPMVEIGGRPILWHIMKIYSHYG-HNDFILCLGYKG-HVIKEYFLNYFLHNSDVTIDLGTNRIELHNSDIEDWKVT 94 (253)
T ss_pred CCCCceEEEECCEEHHHHHHHHHHhCC-CceEEEECCCCH-HHHHHHHHhhhhhcCceeEeecccceeeeccccccccee
Confidence 468999999999999999999999884 899999999875 4455555432 211111 11
Q ss_pred ---C--CccHHHHHHHHHhhcccCCCeEEEEcCCCCCCCHHHHHHHHHHHHhcCCeEEeeeccc--c--EEEecCCCcee
Q 028081 62 ---P--GKERQDSVYSGLQEVDFNSELVCIHDSARPLVLSKDVQKVLMDALRVGAAVLGVPAKA--T--IKEANSESFVV 132 (214)
Q Consensus 62 ---~--~~~~~~sv~~al~~~~~~~~~vl~~~~d~P~v~~~~i~~~i~~~~~~~~~i~~~~~~~--~--~~~~~~~g~v~ 132 (214)
. ..+..++++.|.+.+.. .+.++++.||.- .+. .+..+++.+...++.+++....+ . ....+++|.+.
T Consensus 95 ~~~~~~~~~t~~al~~a~~~~~~-~~~~lv~~gD~i-~~~-dl~~ll~~h~~~~~~~tl~~~~~~~~~g~v~~d~~g~V~ 171 (253)
T cd02524 95 LVDTGLNTMTGGRLKRVRRYLGD-DETFMLTYGDGV-SDV-NINALIEFHRSHGKLATVTAVHPPGRFGELDLDDDGQVT 171 (253)
T ss_pred ecccCcccccHHHHHHHHHhcCC-CCeEEEEcCCEE-ECC-CHHHHHHHHHHcCCCEEEEEecCCCcccEEEECCCCCEE
Confidence 0 12246788889888752 157899999974 344 55888887765544333322221 1 12334456665
Q ss_pred eecCccch--hhhcC-CcccChHHHHHHHHHHHhcCCCCCcHHHHHHhCCCCeEEEecCCCCcccCCHHHHHHHHHHhhc
Q 028081 133 RTLDRKTL--WEMQT-PQVIKPDLLKKGFELVNREGLEVTDDVSIVEHLKHPVYITEGSYTNIKVTTPDDLLIAERILNL 209 (214)
Q Consensus 133 ~~~~r~~~--~~~~~-p~~f~~~~l~~~~~~~~~~~~~~~d~~~~~~~~g~~i~~v~~~~~~~~Idtp~Dl~~a~~~~~~ 209 (214)
.+.+.... ..+.+ -+.|....+. .+... ...+.+|....+.+.| ++...+....+.+|+|++||..|+.+++.
T Consensus 172 ~~~ekp~~~~~~i~~Giyi~~~~l~~-~l~~~--~~~~~~d~l~~li~~~-~v~~~~~~g~w~~I~t~~~~~~~~~~~~~ 247 (253)
T cd02524 172 SFTEKPQGDGGWINGGFFVLEPEVFD-YIDGD--DTVFEREPLERLAKDG-ELMAYKHTGFWQCMDTLRDKQTLEELWNS 247 (253)
T ss_pred EEEECCCCCCceEEEEEEEECHHHHH-hhccc--cchhhHHHHHHHHhcC-CEEEEecCCEEEeCcCHHHHHHHHHHHHc
Confidence 43321100 01112 2556655442 22221 1223445544555555 66666655679999999999999999875
Q ss_pred cc
Q 028081 210 SS 211 (214)
Q Consensus 210 ~~ 211 (214)
..
T Consensus 248 ~~ 249 (253)
T cd02524 248 GK 249 (253)
T ss_pred CC
Confidence 54
|
Alpha-D-Glucose-1-phosphate Cytidylyltransferase catalyzes the production of CDP-D-Glucose from alpha-D-Glucose-1-phosphate and MgCTP as substrate. CDP-D-Glucose is the precursor for synthesizing four of the five naturally occurring 3,6-dideoxy sugars-abequose (3,6-dideoxy-D-Xylo-hexose), ascarylose (3,6-dideoxy-L-arabino-hexose), paratose (3,6-dideoxy-D-ribohexose), and tyvelose (3,6-dideoxy-D-arabino-hexose. Deoxysugars are ubiquitous in nature where they function in a variety of biological processes, including cell adhesion, immune response, determination of ABO blood groups, fertilization, antibiotic function, and microbial pathogenicity. |
| >cd06422 NTP_transferase_like_1 NTP_transferase_like_1 is a member of the nucleotidyl transferase family | Back alignment and domain information |
|---|
Probab=99.56 E-value=2.2e-13 Score=106.41 Aligned_cols=189 Identities=15% Similarity=0.077 Sum_probs=114.7
Q ss_pred CCCceeeeeCCeehHHHHHHHHhcCCCcCeEEEEeCCCchHHHHHHHHh--cCCcEEEecCC---ccHHHHHHHHHhhcc
Q 028081 4 NMPKQYLPLLGQPIALYSFYTFSRMVEVKEIVVVCDPSYSDIFEETKEK--INVDLKFSLPG---KERQDSVYSGLQEVD 78 (214)
Q Consensus 4 ~~~K~l~~l~gkpli~~~i~~~~~~~~~~~iiVv~~~~~~~~~~~~~~~--~~~~~~~~~~~---~~~~~sv~~al~~~~ 78 (214)
++||++++++|+|||.|+++.+.+++ +++|+|++++.. +.+.+.+.. ++..+.+.... .+...++..|+..+.
T Consensus 19 ~~pK~llpi~g~~li~~~l~~l~~~g-i~~i~iv~~~~~-~~i~~~~~~~~~~~~i~~~~~~~~~~g~~~~l~~~~~~~~ 96 (221)
T cd06422 19 TRPKPLVPVAGKPLIDHALDRLAAAG-IRRIVVNTHHLA-DQIEAHLGDSRFGLRITISDEPDELLETGGGIKKALPLLG 96 (221)
T ss_pred CCCCceeeECCEEHHHHHHHHHHHCC-CCEEEEEccCCH-HHHHHHHhcccCCceEEEecCCCcccccHHHHHHHHHhcC
Confidence 58999999999999999999999885 899999998764 445555543 34444433322 234678999998885
Q ss_pred cCCCeEEEEcCCCCCCCHHHHHHHHHHHH--hcCCeEEe--eecccc----EEEecCCCceeeecCccchhhhc-CCccc
Q 028081 79 FNSELVCIHDSARPLVLSKDVQKVLMDAL--RVGAAVLG--VPAKAT----IKEANSESFVVRTLDRKTLWEMQ-TPQVI 149 (214)
Q Consensus 79 ~~~~~vl~~~~d~P~v~~~~i~~~i~~~~--~~~~~i~~--~~~~~~----~~~~~~~g~v~~~~~r~~~~~~~-~p~~f 149 (214)
.+.++++.||.++- . .+.++++.+. ..++.+++ .+..+. ....+++|.+.....+....... .-+.|
T Consensus 97 --~~~~lv~~~D~i~~-~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~v~~d~~~~v~~~~~~~~~~~~~~Giyi~ 172 (221)
T cd06422 97 --DEPFLVVNGDILWD-G-DLAPLLLLHAWRMDALLLLLPLVRNPGHNGVGDFSLDADGRLRRGGGGAVAPFTFTGIQIL 172 (221)
T ss_pred --CCCEEEEeCCeeeC-C-CHHHHHHHHHhccCCCceEEEEEEcCCCCCcceEEECCCCcEeecccCCCCceEEEEEEEE
Confidence 26688999999773 3 5667777665 23333322 233221 12234445554332211101111 23566
Q ss_pred ChHHHHHHHHHHHhcCCCCCcHHHHHHhCCCCeEEEecCCCCcccCCHHHHHHH
Q 028081 150 KPDLLKKGFELVNREGLEVTDDVSIVEHLKHPVYITEGSYTNIKVTTPDDLLIA 203 (214)
Q Consensus 150 ~~~~l~~~~~~~~~~~~~~~d~~~~~~~~g~~i~~v~~~~~~~~Idtp~Dl~~a 203 (214)
+...+.... ...+++++....+...+ ++........|.+|+||+||..|
T Consensus 173 ~~~~l~~l~----~~~~~~~d~~~~l~~~~-~~~~~~~~g~w~di~t~~~~~~a 221 (221)
T cd06422 173 SPELFAGIP----PGKFSLNPLWDRAIAAG-RLFGLVYDGLWFDVGTPERLLAA 221 (221)
T ss_pred cHHHHhhCC----cCcccHHHHHHHHHHcC-CeEEEecCCEEEcCCCHHHHhhC
Confidence 765544321 11234455444444444 45545455679999999999764
|
This is a subfamily of nucleotidyl transferases. Nucleotidyl transferases transfer nucleotides onto phosphosugars. The activated sugars are precursors for synthesis of lipopolysaccharide, glycolipids and polysaccharides. Other subfamilies of nucleotidyl transferases include Alpha-D-Glucose-1-Phosphate Cytidylyltransferase, Mannose-1-phosphate guanyltransferase, and Glucose-1-phosphate thymidylyltransferase. |
| >TIGR00454 conserved hypothetical protein TIGR00454 | Back alignment and domain information |
|---|
Probab=99.54 E-value=3.2e-13 Score=102.39 Aligned_cols=101 Identities=15% Similarity=0.076 Sum_probs=78.4
Q ss_pred CCceeeeeCCeehHHHHHHHHhcCCCcCeEEEEeCCCchHHHHHHHHhcCCcEEEecCCccHHHHHHHHHhhcccCCCeE
Q 028081 5 MPKQYLPLLGQPIALYSFYTFSRMVEVKEIVVVCDPSYSDIFEETKEKINVDLKFSLPGKERQDSVYSGLQEVDFNSELV 84 (214)
Q Consensus 5 ~~K~l~~l~gkpli~~~i~~~~~~~~~~~iiVv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sv~~al~~~~~~~~~v 84 (214)
.||++++++|+|||.|+++++.++. +++|+|++++.. +.++..+...+. ......+.+...++..|++.+. ..+.+
T Consensus 17 ~~K~Ll~i~GkplI~~vi~~l~~~~-i~~I~Vv~~~~~-~~~~~~l~~~~~-~~~~~~g~G~~~~l~~al~~~~-~~~~~ 92 (183)
T TIGR00454 17 VEKPLIEVCGRCLIDHVLSPLLKSK-VNNIIIATSPHT-PKTEEYINSAYK-DYKNASGKGYIEDLNECIGELY-FSEPF 92 (183)
T ss_pred CCceEeEECCEEHHHHHHHHHHhCC-CCEEEEEeCCCH-HHHHHHHhhcCc-EEEecCCCCHHHHHHHHhhccc-CCCCE
Confidence 6899999999999999999998875 899999998754 445555544332 2222455667888999988653 24679
Q ss_pred EEEcCCCCCCCHHHHHHHHHHHHhc
Q 028081 85 CIHDSARPLVLSKDVQKVLMDALRV 109 (214)
Q Consensus 85 l~~~~d~P~v~~~~i~~~i~~~~~~ 109 (214)
+++.||+||+++++|+.+++.+...
T Consensus 93 lv~~~D~P~i~~~~i~~li~~~~~~ 117 (183)
T TIGR00454 93 LVVSSDLINLRSKIIDSIVDYYYCI 117 (183)
T ss_pred EEEeCCcCcCCHHHHHHHHHHHHhc
Confidence 9999999999999999999987653
|
At this time this gene appears to be present only in Archea |
| >TIGR02623 G1P_cyt_trans glucose-1-phosphate cytidylyltransferase | Back alignment and domain information |
|---|
Probab=99.54 E-value=1.1e-12 Score=104.65 Aligned_cols=197 Identities=12% Similarity=0.099 Sum_probs=120.2
Q ss_pred CCCceeeeeCCeehHHHHHHHHhcCCCcCeEEEEeCCCchHHHHHHHHhc-----CCcEE-------------------E
Q 028081 4 NMPKQYLPLLGQPIALYSFYTFSRMVEVKEIVVVCDPSYSDIFEETKEKI-----NVDLK-------------------F 59 (214)
Q Consensus 4 ~~~K~l~~l~gkpli~~~i~~~~~~~~~~~iiVv~~~~~~~~~~~~~~~~-----~~~~~-------------------~ 59 (214)
++||+|++++|+|||.|+++.+.++ ++++|+|++++.. +.+.+.+.+. +..+. +
T Consensus 19 ~~pK~llpv~g~pii~~~l~~l~~~-gi~~i~iv~~~~~-~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 (254)
T TIGR02623 19 LRPKPMVEIGGKPILWHIMKIYSHH-GINDFIICCGYKG-YVIKEYFANYFLHMSDVTFHMADNTMEVHHKRVEPWRVTL 96 (254)
T ss_pred CCCcceeEECCEEHHHHHHHHHHHC-CCCEEEEEcCCCH-HHHHHHHHhhhhcccCeeEEecccccccccccCCccceee
Confidence 5899999999999999999999987 4999999999765 4455554432 11111 1
Q ss_pred ecC--CccHHHHHHHHHhhcccCCCeEEEEcCCCCCCCHHHHHHHHHHHHhcCCeEEeeecccc----EEEecCCCceee
Q 028081 60 SLP--GKERQDSVYSGLQEVDFNSELVCIHDSARPLVLSKDVQKVLMDALRVGAAVLGVPAKAT----IKEANSESFVVR 133 (214)
Q Consensus 60 ~~~--~~~~~~sv~~al~~~~~~~~~vl~~~~d~P~v~~~~i~~~i~~~~~~~~~i~~~~~~~~----~~~~~~~g~v~~ 133 (214)
... ..+..++++++...+. .+.++++.||. +...++..+++.+.+.++.+++..+.++ ....+ +|.+..
T Consensus 97 ~~~~~~~gt~~al~~~~~~i~--~e~flv~~gD~--i~~~dl~~~~~~h~~~~~d~tl~~~~~~~~yG~v~~d-~~~V~~ 171 (254)
T TIGR02623 97 VDTGESTQTGGRLKRVREYLD--DEAFCFTYGDG--VADIDIKALIAFHRKHGKKATVTAVQPPGRFGALDLE-GEQVTS 171 (254)
T ss_pred eecCCcCCcHHHHHHHHHhcC--CCeEEEEeCCe--EecCCHHHHHHHHHHcCCCEEEEEecCCCcccEEEEC-CCeEEE
Confidence 111 1123677888888775 35578999997 3456788888877665543322222222 11223 345544
Q ss_pred ecCccch--hhhcC-CcccChHHHHHHHHHHHhcCCCCCcHHHHHHhCCCCeEEEecCCCCcccCCHHHHHHHHHHhhcc
Q 028081 134 TLDRKTL--WEMQT-PQVIKPDLLKKGFELVNREGLEVTDDVSIVEHLKHPVYITEGSYTNIKVTTPDDLLIAERILNLS 210 (214)
Q Consensus 134 ~~~r~~~--~~~~~-p~~f~~~~l~~~~~~~~~~~~~~~d~~~~~~~~g~~i~~v~~~~~~~~Idtp~Dl~~a~~~~~~~ 210 (214)
+.++... ..+.+ -++|+...| +.+... ...+.+|....+...| ++.....+..+.+|+||++++.++..++..
T Consensus 172 ~~Ekp~~~~~~i~~Giyi~~~~il-~~l~~~--~~~~~~d~i~~l~~~~-~v~~~~~~g~w~dIgt~~~~~~~~~~~~~~ 247 (254)
T TIGR02623 172 FQEKPLGDGGWINGGFFVLNPSVL-DLIDGD--ATVWEQEPLETLAQRG-ELSAYEHSGFWQPMDTLRDKNYLEELWESG 247 (254)
T ss_pred EEeCCCCCCCeEEEEEEEEcHHHH-hhcccc--CchhhhhHHHHHHhCC-CEEEEeCCCEEecCCchHHHHHHHHHHHcC
Confidence 4322100 11122 367776655 333321 1122344444444445 577666667799999999999999988754
Q ss_pred c
Q 028081 211 S 211 (214)
Q Consensus 211 ~ 211 (214)
.
T Consensus 248 ~ 248 (254)
T TIGR02623 248 R 248 (254)
T ss_pred C
Confidence 3
|
Members of this family are the enzyme glucose-1-phosphate cytidylyltransferase, also called CDP-glucose pyrophosphorylase, the product of the rfbF gene. |
| >PF00483 NTP_transferase: Nucleotidyl transferase This Prosite entry is only a sub-family of the Pfam entry | Back alignment and domain information |
|---|
Probab=99.52 E-value=3.3e-13 Score=107.03 Aligned_cols=202 Identities=21% Similarity=0.255 Sum_probs=127.3
Q ss_pred CCCCceeeeeCCe-ehHHHHHHHHhcCCCcCeEEEEeC-CCchHHHHHHHHhc---CCcEEEe--cCCccHHHHHHHHHh
Q 028081 3 ANMPKQYLPLLGQ-PIALYSFYTFSRMVEVKEIVVVCD-PSYSDIFEETKEKI---NVDLKFS--LPGKERQDSVYSGLQ 75 (214)
Q Consensus 3 ~~~~K~l~~l~gk-pli~~~i~~~~~~~~~~~iiVv~~-~~~~~~~~~~~~~~---~~~~~~~--~~~~~~~~sv~~al~ 75 (214)
...||+|++++|+ |||.|+++.+..++ ++++++++. +.. +.+.+.++.. +.++.++ ..+.+..++++.+..
T Consensus 18 ~~~pK~ll~i~g~~pli~~~l~~l~~~g-~~~ii~V~~~~~~-~~i~~~~~~~~~~~~~i~~i~~~~~~Gta~al~~a~~ 95 (248)
T PF00483_consen 18 DTIPKPLLPIGGKYPLIDYVLENLANAG-IKEIIVVVNGYKE-EQIEEHLGSGYKFGVKIEYIVQPEPLGTAGALLQALD 95 (248)
T ss_dssp TTSSGGGSEETTEEEHHHHHHHHHHHTT-CSEEEEEEETTTH-HHHHHHHTTSGGGTEEEEEEEESSSSCHHHHHHHTHH
T ss_pred hccccccceecCCCcchhhhhhhhcccC-CceEEEEEeeccc-ccccccccccccccccceeeecccccchhHHHHHHHH
Confidence 4689999999999 99999999999875 899555444 443 5566666543 2234443 334456888999888
Q ss_pred hcccC--CCeEEEEcCCCCCCCHHHHHHHHHHHHhcCC----eEEeeecccc----EEEecCCCceeeecCccch----h
Q 028081 76 EVDFN--SELVCIHDSARPLVLSKDVQKVLMDALRVGA----AVLGVPAKAT----IKEANSESFVVRTLDRKTL----W 141 (214)
Q Consensus 76 ~~~~~--~~~vl~~~~d~P~v~~~~i~~~i~~~~~~~~----~i~~~~~~~~----~~~~~~~g~v~~~~~r~~~----~ 141 (214)
.+..+ .+.++++.||.-+-. .+..+++.+...++ .+...+..++ ....+++|.|..+.++... .
T Consensus 96 ~i~~~~~~~~~lv~~gD~i~~~--~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~g~v~~d~~~~V~~~~EKP~~~~~~~ 173 (248)
T PF00483_consen 96 FIEEEDDDEDFLVLNGDIIFDD--DLQDMLEFHRESNADGTVTLLVVPVEDPSRYGVVEVDEDGRVIRIVEKPDNPNASN 173 (248)
T ss_dssp HHTTSEE-SEEEEETTEEEEST--THHHHHHHHHHHSSCESEEEEEEESSGGGGSEEEEEETTSEEEEEEESCSSHSHSS
T ss_pred HhhhccccceEEEEeccccccc--hhhhHHHhhhccccccccccccccccccccceeeeeccceeEEEEeccCcccccce
Confidence 88632 235899999995544 78899988876443 2233343332 2234555777665532111 1
Q ss_pred hhc-CCcccChHHHHHHHHHHHh--cC-CCCCcHHHHHHhCCCCeEEEecCC--CCcccCCHHHHHHHHHHhh
Q 028081 142 EMQ-TPQVIKPDLLKKGFELVNR--EG-LEVTDDVSIVEHLKHPVYITEGSY--TNIKVTTPDDLLIAERILN 208 (214)
Q Consensus 142 ~~~-~p~~f~~~~l~~~~~~~~~--~~-~~~~d~~~~~~~~g~~i~~v~~~~--~~~~Idtp~Dl~~a~~~~~ 208 (214)
.++ .-+.|+...+....+.... .+ .+++|....+.+.|..+..+..+. .|+||+||+||..|+..+.
T Consensus 174 ~~~~G~Y~~~~~~~~~~~~~~~~~~~~~~~l~d~i~~~~~~~~~~~~~~~~~~~~w~dig~~~~~~~a~~~~~ 246 (248)
T PF00483_consen 174 LINTGIYIFKPEIFDFLLEMIKENARGEDFLTDAIPKLLEQGKKVYAFIFEGNAYWIDIGTPEDYLEANMDLL 246 (248)
T ss_dssp EEEEEEEEEETHHHHHHHHHHHTCTTSSHHHHHHHHHHHHTTCEEEEEEHSSEE-EEETSSHHHHHHHHHHHH
T ss_pred eccCceEEEcchHHHHHhhhhhccchhhhHHHHHHHHHHHcCCceEEEEecCCeEEEECCCHHHHHHHHHHHh
Confidence 122 2367877766655342211 11 235555555666776776555444 6999999999999987664
|
; InterPro: IPR005835 Nucleotidyl transferases transfer nucleotides from one compound to another. This domain is found in a number of enzymes that transfer nucleotides onto phosphosugars.; GO: 0016779 nucleotidyltransferase activity, 0009058 biosynthetic process; PDB: 1YP2_C 1YP4_D 1YP3_B 1H5S_D 1H5R_C 1H5T_C 2E3D_B 1JYL_C 1JYK_A 1MP5_C .... |
| >cd02523 PC_cytidylyltransferase Phosphocholine cytidylyltransferases catalyze the synthesis of CDP-choline | Back alignment and domain information |
|---|
Probab=99.51 E-value=1.6e-12 Score=102.06 Aligned_cols=191 Identities=16% Similarity=0.128 Sum_probs=110.1
Q ss_pred CCCceeeeeCCeehHHHHHHHHhcCCCcCeEEEEeCCCchHHHHHHHHhcCCcEEEecC----CccHHHHHHHHHhhccc
Q 028081 4 NMPKQYLPLLGQPIALYSFYTFSRMVEVKEIVVVCDPSYSDIFEETKEKINVDLKFSLP----GKERQDSVYSGLQEVDF 79 (214)
Q Consensus 4 ~~~K~l~~l~gkpli~~~i~~~~~~~~~~~iiVv~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~sv~~al~~~~~ 79 (214)
.+||++++++|+|||+|+++.+.+++ +++|+|++++.. +.+.+.+... ..+.++.. ..+...|+..|+..+.
T Consensus 18 ~~pK~l~~~~g~~li~~~l~~l~~~g-i~~i~vv~~~~~-~~~~~~~~~~-~~~~~~~~~~~~~~g~~~s~~~~~~~~~- 93 (229)
T cd02523 18 DRPKCLLEINGKPLLERQIETLKEAG-IDDIVIVTGYKK-EQIEELLKKY-PNIKFVYNPDYAETNNIYSLYLARDFLD- 93 (229)
T ss_pred CCCceeeeECCEEHHHHHHHHHHHCC-CceEEEEeccCH-HHHHHHHhcc-CCeEEEeCcchhhhCcHHHHHHHHHHcC-
Confidence 46999999999999999999999884 899999999864 4455555432 12333322 2345788999988873
Q ss_pred CCCeEEEEcCCCCCCCHHHHHHHHHHHHhcCCeEEeeecccc----EEEe-cCCCceeeecCcc-----chhhhcCCccc
Q 028081 80 NSELVCIHDSARPLVLSKDVQKVLMDALRVGAAVLGVPAKAT----IKEA-NSESFVVRTLDRK-----TLWEMQTPQVI 149 (214)
Q Consensus 80 ~~~~vl~~~~d~P~v~~~~i~~~i~~~~~~~~~i~~~~~~~~----~~~~-~~~g~v~~~~~r~-----~~~~~~~p~~f 149 (214)
+.++++.||.++ +++.++.+++. ..+.++.+.+..+. .... .+++.+....... .....-.-+.|
T Consensus 94 --~~~lv~~~D~~~-~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~k~~~~~~~~~~~~Giy~~ 168 (229)
T cd02523 94 --EDFLLLEGDVVF-DPSILERLLSS--PADNAILVDKKTKEWEDEYVKDLDDAGVLLGIISKAKNLEEIQGEYVGISKF 168 (229)
T ss_pred --CCEEEEeCCEec-CHHHHHHHHcC--CCCCeEEEccCcccccccceeeecCccceEeecccCCCcchhceEEEeEEEE
Confidence 568889999986 67666665531 22334444432211 1111 1112232222111 00111123566
Q ss_pred ChHHHHHHHHH---HHh---cCCCCCcHHHHHHh-CCCCeEEEecCCCCcccCCHHHHHHHH
Q 028081 150 KPDLLKKGFEL---VNR---EGLEVTDDVSIVEH-LKHPVYITEGSYTNIKVTTPDDLLIAE 204 (214)
Q Consensus 150 ~~~~l~~~~~~---~~~---~~~~~~d~~~~~~~-~g~~i~~v~~~~~~~~Idtp~Dl~~a~ 204 (214)
+...+..+... ... ...++++....+.. .+.++..+.. ..|.+||+|+||..|+
T Consensus 169 ~~~~~~~l~~~~~~~~~~~~~~~~~~d~i~~l~~~~~~~v~~~~~-~~w~dI~~~ed~~~a~ 229 (229)
T cd02523 169 SPEDADRLAEALEELIEAGRVNLYYEDALQRLISEEGVKVKDISD-GFWYEIDDLEDLERAE 229 (229)
T ss_pred CHHHHHHHHHHHHHHHhcccccccHHHHHHHHHhhcCeeEEEcCC-CCEEEeCCHHHHHhhC
Confidence 66554433221 111 12345554433333 3455555555 6899999999998874
|
This family contains proteins similar to prokaryotic phosphocholine (P-cho) cytidylyltransferases. Phosphocholine (PC) cytidylyltransferases catalyze the transfer of a cytidine monophosphate from CTP to phosphocholine to form CDP-choline. PC is the most abundant phospholipid in eukaryotic membranes and it is also important in prokaryotic membranes. For pathogenic prokaryotes, the cell surface PC facilitates the interaction with host surface and induces attachment and invasion. In addition cell wall PC serves as scaffold for a group of choline-binding proteins that are secreted from the cells. Phosphocholine (PC) cytidylyltransferase is a key enzyme in the prokaryotic choline metabolism pathway. It has been hypothesized to consist of a choline transport system, a choline kinase, CTP:phosphocholine cytidylyltransferase, and a choline phosphotransferase that transfers P-Cho from CDP |
| >cd02541 UGPase_prokaryotic Prokaryotic UGPase catalyses the synthesis of UDP-glucose | Back alignment and domain information |
|---|
Probab=99.51 E-value=1.1e-12 Score=105.30 Aligned_cols=200 Identities=14% Similarity=0.153 Sum_probs=122.2
Q ss_pred CCCCceeeeeCCeehHHHHHHHHhcCCCcCeEEEEeCCCchHHHHHHHHh----------c--------------CCcEE
Q 028081 3 ANMPKQYLPLLGQPIALYSFYTFSRMVEVKEIVVVCDPSYSDIFEETKEK----------I--------------NVDLK 58 (214)
Q Consensus 3 ~~~~K~l~~l~gkpli~~~i~~~~~~~~~~~iiVv~~~~~~~~~~~~~~~----------~--------------~~~~~ 58 (214)
.++||++++++|+|||.|+++.+.+++ +++|+|++++.. +.+.+.... . +..+.
T Consensus 19 ~~~pK~llpv~gkpli~~~l~~l~~~g-i~~i~iv~~~~~-~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 96 (267)
T cd02541 19 KAIPKEMLPIVDKPVIQYIVEEAVAAG-IEDIIIVTGRGK-RAIEDHFDRSYELEETLEKKGKTDLLEEVRIISDLANIH 96 (267)
T ss_pred cCCCceeeEECCEEHHHHHHHHHHHCC-CCEEEEEeCCch-HHHHHHhCCcHHHHHHHHhcccHHHhhhhhcccCCceEE
Confidence 368999999999999999999999874 899999999865 333333311 0 22333
Q ss_pred EecC--CccHHHHHHHHHhhcccCCCeEEEEcCCCCCCCHH-HHHHHHHHHHhcCCe-EEeeecc--cc----EEEecC-
Q 028081 59 FSLP--GKERQDSVYSGLQEVDFNSELVCIHDSARPLVLSK-DVQKVLMDALRVGAA-VLGVPAK--AT----IKEANS- 127 (214)
Q Consensus 59 ~~~~--~~~~~~sv~~al~~~~~~~~~vl~~~~d~P~v~~~-~i~~~i~~~~~~~~~-i~~~~~~--~~----~~~~~~- 127 (214)
++.. ..+..+++..|...+.. +.++++.||.++...+ .++++++.+...++. +.+.++. +. ....++
T Consensus 97 ~~~~~~~~Gt~~al~~~~~~i~~--~~~lv~~gD~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~g~v~~d~~ 174 (267)
T cd02541 97 YVRQKEPLGLGHAVLCAKPFIGD--EPFAVLLGDDLIDSKEPCLKQLIEAYEKTGASVIAVEEVPPEDVSKYGIVKGEKI 174 (267)
T ss_pred EEEcCCCCChHHHHHHHHHHhCC--CceEEEECCeEEeCCchHHHHHHHHHHHhCCCEEEEEEcChhcCccceEEEeecC
Confidence 3322 13347888899888852 5578889999987764 789999887654433 3333332 11 112232
Q ss_pred ---CCceeeecCccc---h--hhhc-CCcccChHHHHHHHHHHHh--cC-CCCCcHHHHHHhCCCCeEEEecCCCCcccC
Q 028081 128 ---ESFVVRTLDRKT---L--WEMQ-TPQVIKPDLLKKGFELVNR--EG-LEVTDDVSIVEHLKHPVYITEGSYTNIKVT 195 (214)
Q Consensus 128 ---~g~v~~~~~r~~---~--~~~~-~p~~f~~~~l~~~~~~~~~--~~-~~~~d~~~~~~~~g~~i~~v~~~~~~~~Id 195 (214)
++.+....++.. . .... .-+.|+...+.. +..... .+ +++++....+...| ++...+.+..+.||+
T Consensus 175 ~~~~~~v~~~~Ekp~~~~~~~~~~~~Giyi~~~~~~~~-l~~~~~~~~~e~~~~d~i~~l~~~~-~v~~~~~~g~w~dig 252 (267)
T cd02541 175 DGDVFKVKGLVEKPKPEEAPSNLAIVGRYVLTPDIFDI-LENTKPGKGGEIQLTDAIAKLLEEE-PVYAYVFEGKRYDCG 252 (267)
T ss_pred CCCceEEeEEEECCCCCCCCCceEEEEEEEcCHHHHHH-HHhCCCCCCCcEEHHHHHHHHHhcC-CEEEEEeeeEEEeCC
Confidence 124443332210 0 1111 236777765443 332111 12 34555554454555 787766666799999
Q ss_pred CHHHHHHHHHHhh
Q 028081 196 TPDDLLIAERILN 208 (214)
Q Consensus 196 tp~Dl~~a~~~~~ 208 (214)
||+||..|..-+.
T Consensus 253 t~~~y~~a~~~~~ 265 (267)
T cd02541 253 NKLGYLKATVEFA 265 (267)
T ss_pred CHHHHHHHHHHHh
Confidence 9999999886553
|
Prokaryotic UDP-Glucose Pyrophosphorylase (UGPase) catalyzes a reversible production of UDP-Glucose and pyrophosphate (PPi) from glucose-1-phosphate and UTP. UDP-glucose plays pivotal roles in galactose utilization, in glycogen synthesis, and in the synthesis of the carbohydrate moieties of glycolipids , glycoproteins , and proteoglycans. UGPase is found in both prokaryotes and eukaryotes, although prokaryotic and eukaryotic forms of UGPase catalyze the same reaction, they share low sequence similarity. |
| >PRK14500 putative bifunctional molybdopterin-guanine dinucleotide biosynthesis protein MoaC/MobA; Provisional | Back alignment and domain information |
|---|
Probab=99.51 E-value=4.6e-13 Score=110.65 Aligned_cols=95 Identities=18% Similarity=0.145 Sum_probs=69.1
Q ss_pred CCceeeeeCCeehHHHHHHHHhcCCCcCeEEEEeCCCchHHHHHHHHhcCCcEEE-ecCCccHHHHHHHHHhhcccCCCe
Q 028081 5 MPKQYLPLLGQPIALYSFYTFSRMVEVKEIVVVCDPSYSDIFEETKEKINVDLKF-SLPGKERQDSVYSGLQEVDFNSEL 83 (214)
Q Consensus 5 ~~K~l~~l~gkpli~~~i~~~~~~~~~~~iiVv~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~sv~~al~~~~~~~~~ 83 (214)
.+|.|++++|+||++|+++.+... +++|+|+++++.. ... ...+..+.. ...+.++..|++.|++... .+.
T Consensus 176 ~dKaLL~~~GkpLl~~~ie~l~~~--~~~ViVv~~~~~~---~~~-~~~~v~~I~D~~~~~GPlagI~aaL~~~~--~~~ 247 (346)
T PRK14500 176 KDKALLNYQGQPHAQYLYDLLAKY--CEQVFLSARPSQW---QGT-PLENLPTLPDRGESVGPISGILTALQSYP--GVN 247 (346)
T ss_pred CCcccceeCCccHHHHHHHHHHhh--CCEEEEEeCchHh---hhc-cccCCeEEeCCCCCCChHHHHHHHHHhCC--CCC
Confidence 599999999999999999998753 7899999875421 110 000111111 1113468999999998765 345
Q ss_pred EEEEcCCCCCCCHHHHHHHHHHHH
Q 028081 84 VCIHDSARPLVLSKDVQKVLMDAL 107 (214)
Q Consensus 84 vl~~~~d~P~v~~~~i~~~i~~~~ 107 (214)
++++.||+||+++++++.+++.+.
T Consensus 248 ~lVl~cDmP~l~~~~l~~L~~~~~ 271 (346)
T PRK14500 248 WLVVACDLAYLNSETVEKLLAHYR 271 (346)
T ss_pred EEEEECCcCCCCHHHHHHHHHhhh
Confidence 688999999999999999998764
|
|
| >TIGR01105 galF UTP-glucose-1-phosphate uridylyltransferase, non-catalytic GalF subunit | Back alignment and domain information |
|---|
Probab=99.51 E-value=1.8e-12 Score=105.41 Aligned_cols=197 Identities=15% Similarity=0.149 Sum_probs=119.7
Q ss_pred CCCCceeeeeCCeehHHHHHHHHhcCCCcCeEEEEeCCCchHHHHHHHHh-------------------------cCCcE
Q 028081 3 ANMPKQYLPLLGQPIALYSFYTFSRMVEVKEIVVVCDPSYSDIFEETKEK-------------------------INVDL 57 (214)
Q Consensus 3 ~~~~K~l~~l~gkpli~~~i~~~~~~~~~~~iiVv~~~~~~~~~~~~~~~-------------------------~~~~~ 57 (214)
..+||+|++++|||||+|+++.+.+++ +++|+|++++.. +.+.+.... ++.++
T Consensus 22 ~~~PKpLvpV~gkPiI~~vl~~l~~~G-i~~ivivv~~~~-~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 99 (297)
T TIGR01105 22 KAIPKEMLPIVDKPMIQYIVDEIVAAG-IKEIVLVTHASK-NAVENHFDTSYELESLLEQRVKRQLLAEVQSICPPGVTI 99 (297)
T ss_pred CCCCceeeEECCEEHHHHHHHHHHHCC-CCEEEEEecCCh-HHHHHHHhchHHHHHHHHHhcchhhhhhhhhcCCCCceE
Confidence 468999999999999999999999875 999999999875 344444321 13345
Q ss_pred EEecCC--ccHHHHHHHHHhhcccCCCeEEEEcCCCCCCCH-------HHHHHHHHHHHhcC-CeEEeeecc-cc----E
Q 028081 58 KFSLPG--KERQDSVYSGLQEVDFNSELVCIHDSARPLVLS-------KDVQKVLMDALRVG-AAVLGVPAK-AT----I 122 (214)
Q Consensus 58 ~~~~~~--~~~~~sv~~al~~~~~~~~~vl~~~~d~P~v~~-------~~i~~~i~~~~~~~-~~i~~~~~~-~~----~ 122 (214)
.++... .+..++++.|...+.+ .+ ++++.||. +++. -.+.++++.+.+.+ .++.+.+.. ++ +
T Consensus 100 ~~~~q~~~lGtg~Av~~a~~~l~~-~~-flvv~gD~-l~~~~~~~~~~~~l~~li~~~~~~~~~~~~~~~~~~~~~~yGv 176 (297)
T TIGR01105 100 MNVRQAQPLGLGHSILCARPVVGD-NP-FVVVLPDI-IIDDATADPLRYNLAAMIARFNETGRSQVLAKRMPGDLSEYSV 176 (297)
T ss_pred EEeeCCCcCchHHHHHHHHHHhCC-CC-EEEEECCe-eccccccccchhHHHHHHHHHHHhCCcEEEEEEcCCCCccceE
Confidence 454332 2347889999988852 34 45556886 4442 47888888776444 344444442 32 1
Q ss_pred EEe----cCCCce---eeecCccc------hhhhc-CCcccChHHHHHHHHHHHh---cCCCCCcHHHHHHhCCCCeEEE
Q 028081 123 KEA----NSESFV---VRTLDRKT------LWEMQ-TPQVIKPDLLKKGFELVNR---EGLEVTDDVSIVEHLKHPVYIT 185 (214)
Q Consensus 123 ~~~----~~~g~v---~~~~~r~~------~~~~~-~p~~f~~~~l~~~~~~~~~---~~~~~~d~~~~~~~~g~~i~~v 185 (214)
... +.+|.+ ....++.. ...+. .-+.|+...+. .+..... ++++++|....+...| ++...
T Consensus 177 v~~~~~~d~~g~v~~I~~~~EKP~~~~~~~s~~~~~GiYi~~~~i~~-~l~~~~~~~~ge~~ltd~i~~l~~~~-~v~~~ 254 (297)
T TIGR01105 177 IQTKEPLDREGKVSRIVEFIEKPDQPQTLDSDLMAVGRYVLSADIWA-ELERTEPGAWGRIQLTDAIAELAKKQ-SVDAM 254 (297)
T ss_pred EEecccccCCCCeeeEeEEEECCCCcccCCcCEEEEEEEEECHHHHH-HHhcCCCCCCCeeeHHHHHHHHHhcC-CEEEE
Confidence 112 123433 22221100 01112 23677776544 3443211 1256777666555544 67766
Q ss_pred ecCCCCcccCCHHHHHHHHHH
Q 028081 186 EGSYTNIKVTTPDDLLIAERI 206 (214)
Q Consensus 186 ~~~~~~~~Idtp~Dl~~a~~~ 206 (214)
..+..|+||.+|+||..|..-
T Consensus 255 ~~~g~w~DiG~p~~~~~a~~~ 275 (297)
T TIGR01105 255 LMTGDSYDCGKKMGYMQAFVK 275 (297)
T ss_pred EeccEEECCCCHHHHHHHHHH
Confidence 556679999999999998543
|
GalF is a non-catalytic subunit of the UTP-glucose pyrophosphorylase modulating the enzyme activity to increase the formation of UDP-glucose |
| >TIGR03552 F420_cofC 2-phospho-L-lactate guanylyltransferase CofC | Back alignment and domain information |
|---|
Probab=99.51 E-value=1.6e-13 Score=105.25 Aligned_cols=91 Identities=14% Similarity=0.180 Sum_probs=67.7
Q ss_pred eehHHHHHHHHhcCCCcCeEEEEeCCCchHHHHHHHHhcCCcEEEecCCccHHHHHHHHHhhcccCCCeEEEEcCCCCCC
Q 028081 15 QPIALYSFYTFSRMVEVKEIVVVCDPSYSDIFEETKEKINVDLKFSLPGKERQDSVYSGLQEVDFNSELVCIHDSARPLV 94 (214)
Q Consensus 15 kpli~~~i~~~~~~~~~~~iiVv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sv~~al~~~~~~~~~vl~~~~d~P~v 94 (214)
+|||.|+++++..+. +++++|+++++. +...+..++..+ +...+.+..+++.+|++++..+++.++++.||+||+
T Consensus 30 ~~ll~~~l~~l~~~~-~~~vvvv~~~~~---~~~~~~~~~v~~-i~~~~~G~~~si~~al~~~~~~~~~vlv~~~D~P~l 104 (195)
T TIGR03552 30 LAMLRDVITALRGAG-AGAVLVVSPDPA---LLEAARNLGAPV-LRDPGPGLNNALNAALAEAREPGGAVLILMADLPLL 104 (195)
T ss_pred HHHHHHHHHHHHhcC-CCCEEEECCCHH---HHHHHHhcCCEE-EecCCCCHHHHHHHHHHHhhccCCeEEEEeCCCCCC
Confidence 699999999999875 588999888543 334444455433 222233678999999988754457899999999999
Q ss_pred CHHHHHHHHHHHHhcC
Q 028081 95 LSKDVQKVLMDALRVG 110 (214)
Q Consensus 95 ~~~~i~~~i~~~~~~~ 110 (214)
++++|+++++.+...+
T Consensus 105 ~~~~i~~l~~~~~~~~ 120 (195)
T TIGR03552 105 TPRELKRLLAAATEGD 120 (195)
T ss_pred CHHHHHHHHHhcccCC
Confidence 9999999998775433
|
Members of this protein family are the CofC enzyme of coenzyme F420 biosynthesis. |
| >COG1213 Predicted sugar nucleotidyltransferases [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=99.50 E-value=5e-13 Score=102.48 Aligned_cols=198 Identities=18% Similarity=0.194 Sum_probs=117.7
Q ss_pred CCCCCceeeeeCCeehHHHHHHHHhcCCCcCeEEEEe-CCCchHHHHHHHHhcCCcEEEecCCc----cHHHHHHHHHhh
Q 028081 2 GANMPKQYLPLLGQPIALYSFYTFSRMVEVKEIVVVC-DPSYSDIFEETKEKINVDLKFSLPGK----ERQDSVYSGLQE 76 (214)
Q Consensus 2 ~~~~~K~l~~l~gkpli~~~i~~~~~~~~~~~iiVv~-~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~sv~~al~~ 76 (214)
|-+.||.|.+++|+|+|.|+++++.+.+ +++++||+ +... +.+++..++++....++.+.. ....|+..|.+.
T Consensus 18 g~~~PK~Lvev~gr~ii~~~i~~L~~~g-i~e~vvV~~g~~~-~lve~~l~~~~~~~~iv~N~~y~ktN~~~Sl~~akd~ 95 (239)
T COG1213 18 GPDIPKALVEVGGREIIYRTIENLAKAG-ITEFVVVTNGYRA-DLVEEFLKKYPFNAKIVINSDYEKTNTGYSLLLAKDY 95 (239)
T ss_pred CCCCCchhhhcCCeEeHHHHHHHHHHcC-CceEEEEeccchH-HHHHHHHhcCCcceEEEeCCCcccCCceeEEeeehhh
Confidence 3468999999999999999999999886 89999999 5554 667777777765555543311 125678888888
Q ss_pred cccCCCeEEEEcCCCCCCCHHHHHHHHHHHHhcCCeEEeeeccc----cEEEecCCCceeeecCccchhhhc-C-CcccC
Q 028081 77 VDFNSELVCIHDSARPLVLSKDVQKVLMDALRVGAAVLGVPAKA----TIKEANSESFVVRTLDRKTLWEMQ-T-PQVIK 150 (214)
Q Consensus 77 ~~~~~~~vl~~~~d~P~v~~~~i~~~i~~~~~~~~~i~~~~~~~----~~~~~~~~g~v~~~~~r~~~~~~~-~-p~~f~ 150 (214)
+. .-++++++|. +..+..+++++++- ....++...|... -.+...++|.+..+-.+-+-+..+ + -..|+
T Consensus 96 ~~---~~fii~~sD~-vye~~~~e~l~~a~-~~~li~d~~~~~~~~~ea~kv~~e~G~i~~igK~l~e~~~e~iGi~~l~ 170 (239)
T COG1213 96 MD---GRFILVMSDH-VYEPSILERLLEAP-GEGLIVDRRPRYVGVEEATKVKDEGGRIVEIGKDLTEYDGEDIGIFILS 170 (239)
T ss_pred hc---CcEEEEeCCE-eecHHHHHHHHhCc-CCcEEEeccccccccCceeEEEecCCEEehhcCCcccccceeeeeEEec
Confidence 75 2378889999 66899999998753 1111222222211 111113355554332111111100 0 12334
Q ss_pred hHHHHHHHHHHHhcCCCCCcHHHHHHhCCCCeEEEec---CCCCcccCCHHHHHHHHHHhh
Q 028081 151 PDLLKKGFELVNREGLEVTDDVSIVEHLKHPVYITEG---SYTNIKVTTPDDLLIAERILN 208 (214)
Q Consensus 151 ~~~l~~~~~~~~~~~~~~~d~~~~~~~~g~~i~~v~~---~~~~~~Idtp~Dl~~a~~~~~ 208 (214)
.+.+...++...... ..+-.....+.+.+...+.. ...|++||||||+..|++.+-
T Consensus 171 ~~i~~~~~~~~~e~~--~~~~~~~~~~~~~~~~~~di~~~g~~w~EVDtpeDl~~ar~~~~ 229 (239)
T COG1213 171 DSIFEDTYELLVERS--EYDYREVEKEAGLPFTEVDIHVDGLFWMEVDTPEDLERARKYLV 229 (239)
T ss_pred hHHHHHHHHHHhhhh--hHHHHHHHHHhCCceEEeeccccCceeEecCCHHHHHHHHHHHH
Confidence 445555544432211 11122334445555554432 246899999999999998764
|
|
| >COG1208 GCD1 Nucleoside-diphosphate-sugar pyrophosphorylase involved in lipopolysaccharide biosynthesis/translation initiation factor 2B, gamma/epsilon subunits (eIF-2Bgamma/eIF-2Bepsilon) [Cell envelope biogenesis, outer membrane / Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.49 E-value=2.2e-12 Score=107.53 Aligned_cols=198 Identities=17% Similarity=0.182 Sum_probs=124.9
Q ss_pred CCCceeeeeCCeehHHHHHHHHhcCCCcCeEEEEeCCCchHHHHHHHHh---cCCcEEEecC--CccHHHHHHHHHhhcc
Q 028081 4 NMPKQYLPLLGQPIALYSFYTFSRMVEVKEIVVVCDPSYSDIFEETKEK---INVDLKFSLP--GKERQDSVYSGLQEVD 78 (214)
Q Consensus 4 ~~~K~l~~l~gkpli~~~i~~~~~~~~~~~iiVv~~~~~~~~~~~~~~~---~~~~~~~~~~--~~~~~~sv~~al~~~~ 78 (214)
.+||+|+|++|||||+|+++.+.+.+ +++++|++++.. +.+++.+.+ ++.++.++.. ..+...+++++...+.
T Consensus 21 ~~PKPllpI~gkPii~~~l~~L~~~G-v~eivi~~~y~~-~~i~~~~~d~~~~~~~I~y~~e~~~lGTag~l~~a~~~l~ 98 (358)
T COG1208 21 DRPKPLLPIAGKPLIEYVLEALAAAG-VEEIVLVVGYLG-EQIEEYFGDGEGLGVRITYVVEKEPLGTAGALKNALDLLG 98 (358)
T ss_pred CCCcccceeCCccHHHHHHHHHHHCC-CcEEEEEeccch-HHHHHHHhcccccCCceEEEecCCcCccHHHHHHHHHhcC
Confidence 58999999999999999999998875 999999998876 556666665 2445555432 2234778899998886
Q ss_pred cCCCeEEEEcCCCCCCCHHHHHHHHHHHHhcCC--eEEeeecccc--E--EEecCC-CceeeecCcc---ch--hhhcC-
Q 028081 79 FNSELVCIHDSARPLVLSKDVQKVLMDALRVGA--AVLGVPAKAT--I--KEANSE-SFVVRTLDRK---TL--WEMQT- 145 (214)
Q Consensus 79 ~~~~~vl~~~~d~P~v~~~~i~~~i~~~~~~~~--~i~~~~~~~~--~--~~~~~~-g~v~~~~~r~---~~--~~~~~- 145 (214)
. +.++++.||..+ +.+ ++.+++.++..++ .+......++ . ...+.+ +.+.....+. .. ..+++
T Consensus 99 ~--~~f~v~~GDv~~-~~d-l~~l~~~~~~~~~~~~~~~~~~~~~~~~Gvv~~~~~~~~v~~f~ekp~~~~~~~~~in~G 174 (358)
T COG1208 99 G--DDFLVLNGDVLT-DLD-LSELLEFHKKKGALATIALTRVLDPSEFGVVETDDGDGRVVEFREKPGPEEPPSNLINAG 174 (358)
T ss_pred C--CcEEEEECCeee-ccC-HHHHHHHHHhccCccEEEEEecCCCCcCceEEecCCCceEEEEEecCCCCCCCCceEEeE
Confidence 2 568889999944 444 8999988876532 3333444443 1 122212 3454332221 00 01111
Q ss_pred CcccChHHHHHHHHHHHhcCCCCCc-HHHHHHhCCCCeEEEecCCCCcccCCHHHHHHHHHHhhcc
Q 028081 146 PQVIKPDLLKKGFELVNREGLEVTD-DVSIVEHLKHPVYITEGSYTNIKVTTPDDLLIAERILNLS 210 (214)
Q Consensus 146 p~~f~~~~l~~~~~~~~~~~~~~~d-~~~~~~~~g~~i~~v~~~~~~~~Idtp~Dl~~a~~~~~~~ 210 (214)
-+.|+...+. .+... ....+.+ ....+.+.|..+..+..+..|+||+||+||..|++.+..+
T Consensus 175 iyi~~~~v~~-~i~~~--~~~~~~~~~~~~l~~~~~~v~~~~~~g~W~dig~p~d~~~a~~~~~~~ 237 (358)
T COG1208 175 IYIFDPEVFD-YIEKG--ERFDFEEELLPALAAKGEDVYGYVFEGYWLDIGTPEDLLEANELLLRG 237 (358)
T ss_pred EEEECHHHhh-hcccC--CcccchhhHHHHHHhCCCcEEEEEeCCeEEeCCCHHHHHHHHHHHHhc
Confidence 2566665554 22211 1122333 2334445565677666666999999999999999988754
|
|
| >PRK13389 UTP--glucose-1-phosphate uridylyltransferase subunit GalU; Provisional | Back alignment and domain information |
|---|
Probab=99.48 E-value=6.2e-12 Score=102.61 Aligned_cols=198 Identities=15% Similarity=0.146 Sum_probs=120.9
Q ss_pred CCCceeeeeCCeehHHHHHHHHhcCCCcCeEEEEeCCCchHHHHHHHHh---c----------------------CCcEE
Q 028081 4 NMPKQYLPLLGQPIALYSFYTFSRMVEVKEIVVVCDPSYSDIFEETKEK---I----------------------NVDLK 58 (214)
Q Consensus 4 ~~~K~l~~l~gkpli~~~i~~~~~~~~~~~iiVv~~~~~~~~~~~~~~~---~----------------------~~~~~ 58 (214)
.+||++++++|||+|.|+++.+.+++ +++|+|++++.. +.+.+.+.. + +..+.
T Consensus 28 ~~pK~l~pv~g~pii~~~l~~l~~~g-i~~i~vv~~~~~-~~i~~~~~~~~~~~~~l~~~~~~~~~~e~~~i~~~~~~i~ 105 (302)
T PRK13389 28 AIPKEMLPLVDKPLIQYVVNECIAAG-ITEIVLVTHSSK-NSIENHFDTSFELEAMLEKRVKRQLLDEVQSICPPHVTIM 105 (302)
T ss_pred CCCceeeEECCEEHHHHHHHHHHHCC-CCEEEEEeCCCH-HHHHHHHccchhhhhhhhhhhhhHHHHhhhhccccCceEE
Confidence 68999999999999999999999885 999999999875 334444431 0 11122
Q ss_pred EecC--CccHHHHHHHHHhhcccCCCeEEEEcCCCCC------CCHHHHHHHHHHHHhcCC-eEEeeeccccE--EE--e
Q 028081 59 FSLP--GKERQDSVYSGLQEVDFNSELVCIHDSARPL------VLSKDVQKVLMDALRVGA-AVLGVPAKATI--KE--A 125 (214)
Q Consensus 59 ~~~~--~~~~~~sv~~al~~~~~~~~~vl~~~~d~P~------v~~~~i~~~i~~~~~~~~-~i~~~~~~~~~--~~--~ 125 (214)
++.. ..+..++++.|...+. .+-++++.||.++ +....+..+++.+.+.++ ++.+.++.++. .. .
T Consensus 106 ~~~q~~~~Gtg~Av~~a~~~~~--~~~~lVl~gD~~~~~~~~~~~~~dl~~l~~~h~~~~~~tl~~~~~~~~~~yGvv~~ 183 (302)
T PRK13389 106 QVRQGLAKGLGHAVLCAHPVVG--DEPVAVILPDVILDEYESDLSQDNLAEMIRRFDETGHSQIMVEPVADVTAYGVVDC 183 (302)
T ss_pred EeecCCCCChHHHHHHHHHHcC--CCCEEEEeCcceecccccccccccHHHHHHHHHhcCCCEEEEEEcccCCcceEEEe
Confidence 2221 1234677888877764 2446788899987 355788899987765443 44444554331 11 1
Q ss_pred cC-------CCceeeecCccc-----hhhhcC-CcccChHHHHHHHHHHHh---cCCCCCcHHHHHHhCCCCeEEEecCC
Q 028081 126 NS-------ESFVVRTLDRKT-----LWEMQT-PQVIKPDLLKKGFELVNR---EGLEVTDDVSIVEHLKHPVYITEGSY 189 (214)
Q Consensus 126 ~~-------~g~v~~~~~r~~-----~~~~~~-p~~f~~~~l~~~~~~~~~---~~~~~~d~~~~~~~~g~~i~~v~~~~ 189 (214)
++ ++.+..+.+... -..+.+ -++|+...+ +.+..... +.++++|....+... .++.....+.
T Consensus 184 ~~~~~~~~~~~~V~~~~EKp~~~~~~s~~~~~GiYi~~~~il-~~l~~~~~~~~~e~~l~d~i~~l~~~-~~v~~~~~~G 261 (302)
T PRK13389 184 KGVELAPGESVPMVGVVEKPKADVAPSNLAIVGRYVLSADIW-PLLAKTPPGAGDEIQLTDAIDMLIEK-ETVEAYHMKG 261 (302)
T ss_pred cCcccccCCcceEEEEEECCCCCCCCccEEEEEEEEECHHHH-HHHHhCCCCCCCeeeHHHHHHHHHHc-CCEEEEEeee
Confidence 21 123433322110 011222 367777654 44543221 124567666555554 4677666566
Q ss_pred CCcccCCHHHHHHHHHHh
Q 028081 190 TNIKVTTPDDLLIAERIL 207 (214)
Q Consensus 190 ~~~~Idtp~Dl~~a~~~~ 207 (214)
.|+||+||+||..|..-+
T Consensus 262 ~w~DIGtpe~~~~a~~~~ 279 (302)
T PRK13389 262 KSHDCGNKLGYMQAFVEY 279 (302)
T ss_pred EEEeCCCHHHHHHHHHHH
Confidence 899999999999986554
|
|
| >cd06426 NTP_transferase_like_2 NTP_trnasferase_like_2 is a member of the nucleotidyl transferase family | Back alignment and domain information |
|---|
Probab=99.48 E-value=1.6e-12 Score=101.38 Aligned_cols=190 Identities=12% Similarity=0.123 Sum_probs=113.9
Q ss_pred CCCCceeeeeCCeehHHHHHHHHhcCCCcCeEEEEeCCCchHHHHHHHHh---cCCcEEEecC--CccHHHHHHHHHhhc
Q 028081 3 ANMPKQYLPLLGQPIALYSFYTFSRMVEVKEIVVVCDPSYSDIFEETKEK---INVDLKFSLP--GKERQDSVYSGLQEV 77 (214)
Q Consensus 3 ~~~~K~l~~l~gkpli~~~i~~~~~~~~~~~iiVv~~~~~~~~~~~~~~~---~~~~~~~~~~--~~~~~~sv~~al~~~ 77 (214)
.+.||+|++++|+|||.|+++.+...+ +++|+|++++.. +.+.+...+ ++..+.++.. ..+..+++..+....
T Consensus 17 ~~~pK~ll~~~g~pli~~~l~~l~~~~-~~~iivv~~~~~-~~i~~~~~~~~~~~~~i~~~~~~~~~g~~~~l~~~~~~~ 94 (220)
T cd06426 17 ENTPKPMLKVGGKPILETIIDRFIAQG-FRNFYISVNYLA-EMIEDYFGDGSKFGVNISYVREDKPLGTAGALSLLPEKP 94 (220)
T ss_pred CCCCCccCeECCcchHHHHHHHHHHCC-CcEEEEECccCH-HHHHHHHCCccccCccEEEEECCCCCcchHHHHHHHhhC
Confidence 368999999999999999999999874 899999998764 445554432 2333444332 122245554444332
Q ss_pred ccCCCeEEEEcCCCCCCCHHHHHHHHHHHHhcCC--eEEeeecccc----EEEecCCCceeeecCccc-hhhhc-CCccc
Q 028081 78 DFNSELVCIHDSARPLVLSKDVQKVLMDALRVGA--AVLGVPAKAT----IKEANSESFVVRTLDRKT-LWEMQ-TPQVI 149 (214)
Q Consensus 78 ~~~~~~vl~~~~d~P~v~~~~i~~~i~~~~~~~~--~i~~~~~~~~----~~~~~~~g~v~~~~~r~~-~~~~~-~p~~f 149 (214)
.+.++++.||. +....++.+++.+...+. ++.+.+.... +...+ +|.+..+.+... -.... .-+.|
T Consensus 95 ---~~~~lv~~~D~--i~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~d-~~~v~~~~ek~~~~~~~~~Giy~~ 168 (220)
T cd06426 95 ---TDPFLVMNGDI--LTNLNYEHLLDFHKENNADATVCVREYEVQVPYGVVETE-GGRITSIEEKPTHSFLVNAGIYVL 168 (220)
T ss_pred ---CCCEEEEcCCE--eeccCHHHHHHHHHhcCCCEEEEEEEcCCCCcceEEEEC-CCEEEEEEECCCCCCeEEEEEEEE
Confidence 35688889995 556678899987765443 3333332211 11223 355544332111 00111 23567
Q ss_pred ChHHHHHHHHHHHhcC-CCCCcHHHHHHhCCCCeEEEecCCCCcccCCHHHHHHHH
Q 028081 150 KPDLLKKGFELVNREG-LEVTDDVSIVEHLKHPVYITEGSYTNIKVTTPDDLLIAE 204 (214)
Q Consensus 150 ~~~~l~~~~~~~~~~~-~~~~d~~~~~~~~g~~i~~v~~~~~~~~Idtp~Dl~~a~ 204 (214)
+...+.. +. ..+ +++++....+.+.|.++...+.+..+.+|+||+||..|+
T Consensus 169 ~~~~~~~-i~---~~~~~~l~~~~~~~i~~~~~i~~~~~~~~w~~igt~~dl~~a~ 220 (220)
T cd06426 169 EPEVLDL-IP---KNEFFDMPDLIEKLIKEGKKVGVFPIHEYWLDIGRPEDYEKAN 220 (220)
T ss_pred cHHHHhh-cC---CCCCcCHHHHHHHHHHCCCcEEEEEeCCeEEeCCCHHHHHhhC
Confidence 7654432 11 122 345554444556677788877777899999999998763
|
This is a subfamily of nucleotidyl transferases. Nucleotidyl transferases transfer nucleotides onto phosphosugars. The activated sugars are precursors for synthesis of lipopolysaccharide, glycolipids and polysaccharides. Other subfamilies of nucleotidyl transferases include Alpha-D-Glucose-1-Phosphate Cytidylyltransferase, Mannose-1-phosphate guanyltransferase, and Glucose-1-phosphate thymidylyltransferase. |
| >TIGR01099 galU UTP-glucose-1-phosphate uridylyltransferase | Back alignment and domain information |
|---|
Probab=99.48 E-value=2.9e-12 Score=102.52 Aligned_cols=194 Identities=13% Similarity=0.127 Sum_probs=117.6
Q ss_pred CCCceeeeeCCeehHHHHHHHHhcCCCcCeEEEEeCCCchHHHHHHHHh----------------------c--CCcEEE
Q 028081 4 NMPKQYLPLLGQPIALYSFYTFSRMVEVKEIVVVCDPSYSDIFEETKEK----------------------I--NVDLKF 59 (214)
Q Consensus 4 ~~~K~l~~l~gkpli~~~i~~~~~~~~~~~iiVv~~~~~~~~~~~~~~~----------------------~--~~~~~~ 59 (214)
++||++++++|+|||.|+++.+.+++ +++|+|++++.. +.+.+.... + ...+.+
T Consensus 20 ~~pK~llpi~g~pli~~~l~~l~~~g-i~~v~iv~~~~~-~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 97 (260)
T TIGR01099 20 AIPKEMLPIVDKPLIQYVVEEAVEAG-IEDILIVTGRGK-RAIEDHFDTSYELEHQLEKRGKEELLKEVRSISPLATIFY 97 (260)
T ss_pred CCCceeEEECCEEHHHHHHHHHHhCC-CCEEEEEeCCcH-HHHHHHhcccHHHHHHHHhhhhHHHHHHhhhccccceEEE
Confidence 68999999999999999999999875 899999999875 334443321 0 112233
Q ss_pred ecC--CccHHHHHHHHHhhcccCCCeEEEEcCCCCCCCH-HHHHHHHHHHHhcCCe-EEeeecc--cc----EEEec---
Q 028081 60 SLP--GKERQDSVYSGLQEVDFNSELVCIHDSARPLVLS-KDVQKVLMDALRVGAA-VLGVPAK--AT----IKEAN--- 126 (214)
Q Consensus 60 ~~~--~~~~~~sv~~al~~~~~~~~~vl~~~~d~P~v~~-~~i~~~i~~~~~~~~~-i~~~~~~--~~----~~~~~--- 126 (214)
+.. ..+..+++..+...+. .+.++++.||.|+... +.++.+++.+...++. +.+.++. +. +...+
T Consensus 98 ~~~~~~~G~~~al~~~~~~~~--~~~~lv~~gD~~~~~~~~~~~~l~~~~~~~~~~ii~~~~~~~~~~~~~g~v~~d~~~ 175 (260)
T TIGR01099 98 VRQKEQKGLGHAVLCAEPFVG--DEPFAVILGDDIVVSEEPALKQMIDLYEKYGCSIIAVEEVPKEEVSKYGVIDGEGVE 175 (260)
T ss_pred EecCCCCCHHHHHHHHHHhhC--CCCEEEEeccceecCCcHHHHHHHHHHHHhCCCEEEEEECChhhcccCceEEecccc
Confidence 321 2235778888888774 3457888999999876 5899999988665543 3333322 11 11222
Q ss_pred C-CCceeeecCcc---c--hhhhc-CCcccChHHHHHHHHHHHh-c-CCCCCcHHHHHHhCCCCeEEEecCCCCcccCCH
Q 028081 127 S-ESFVVRTLDRK---T--LWEMQ-TPQVIKPDLLKKGFELVNR-E-GLEVTDDVSIVEHLKHPVYITEGSYTNIKVTTP 197 (214)
Q Consensus 127 ~-~g~v~~~~~r~---~--~~~~~-~p~~f~~~~l~~~~~~~~~-~-~~~~~d~~~~~~~~g~~i~~v~~~~~~~~Idtp 197 (214)
+ +|.+..+.+.. . -..+. .-++|+...+..+...... . .++++|....+...+ ++...+.+..+.||.||
T Consensus 176 ~~~~~v~~~~Ekp~~~~~~~~~~~~Giyi~~~~~~~~l~~~~~~~~~~~~l~d~i~~l~~~~-~v~~~~~~g~w~digs~ 254 (260)
T TIGR01099 176 EGLYEIKDMVEKPKPEEAPSNLAIVGRYVLTPDIFDLLEETPPGAGGEIQLTDALRKLLEKE-TVYAYKFKGKRYDCGSK 254 (260)
T ss_pred CCceeEEEEEECCCCCCCCCceEEEEEEECCHHHHHHHHhCCCCCCCceeHHHHHHHHHhcC-CEEEEEcceEEEeCCCH
Confidence 1 24554433211 0 01111 2367777654443221111 1 245565544444444 68777666789999999
Q ss_pred HHHHH
Q 028081 198 DDLLI 202 (214)
Q Consensus 198 ~Dl~~ 202 (214)
+||..
T Consensus 255 ~~y~~ 259 (260)
T TIGR01099 255 LGYLK 259 (260)
T ss_pred HHHhh
Confidence 99975
|
Built to distinquish between the highly similar genes galU and galF |
| >cd06428 M1P_guanylylT_A_like_N N-terminal domain of M1P_guanylyl_A_ like proteins are likely to be a isoform of GDP-mannose pyrophosphorylase | Back alignment and domain information |
|---|
Probab=99.45 E-value=1.6e-11 Score=98.16 Aligned_cols=198 Identities=14% Similarity=0.215 Sum_probs=119.0
Q ss_pred CCCceeeeeCCeehHHHHHHHHhcCCCcCeEEEEeCCCchHHHHHHHHh----cCCcEEEecC--CccHHHHHHHHHhhc
Q 028081 4 NMPKQYLPLLGQPIALYSFYTFSRMVEVKEIVVVCDPSYSDIFEETKEK----INVDLKFSLP--GKERQDSVYSGLQEV 77 (214)
Q Consensus 4 ~~~K~l~~l~gkpli~~~i~~~~~~~~~~~iiVv~~~~~~~~~~~~~~~----~~~~~~~~~~--~~~~~~sv~~al~~~ 77 (214)
.+||+|+|++|||||.|+++.+.+...+++|+|++++.. +.+.+.+.. .+..+.++.. ..+..+++..+...+
T Consensus 20 ~~PK~llpv~g~plI~~~l~~l~~~~gi~~i~iv~~~~~-~~i~~~l~~~~~~~~~~i~~~~~~~~~Gt~~al~~a~~~l 98 (257)
T cd06428 20 DVPKPLFPVAGKPMIHHHIEACAKVPDLKEVLLIGFYPE-SVFSDFISDAQQEFNVPIRYLQEYKPLGTAGGLYHFRDQI 98 (257)
T ss_pred CCCcccCeECCeeHHHHHHHHHHhcCCCcEEEEEecCCH-HHHHHHHHhcccccCceEEEecCCccCCcHHHHHHHHHHh
Confidence 679999999999999999999998434899999998754 445555432 2333444332 122367777887777
Q ss_pred cc-CCCeEEEEcCCCCCCCHHHHHHHHHHHHhcCC--eEEeeec--ccc----EEEec-CCCceeeecCccc---hhhhc
Q 028081 78 DF-NSELVCIHDSARPLVLSKDVQKVLMDALRVGA--AVLGVPA--KAT----IKEAN-SESFVVRTLDRKT---LWEMQ 144 (214)
Q Consensus 78 ~~-~~~~vl~~~~d~P~v~~~~i~~~i~~~~~~~~--~i~~~~~--~~~----~~~~~-~~g~v~~~~~r~~---~~~~~ 144 (214)
.. ..+.++++.||.++ + ..++.+++.+...++ .+.+.++ .++ +...+ ++|.+....++.. -..+.
T Consensus 99 ~~~~~~~~lv~~gD~~~-~-~dl~~~~~~h~~~~~~~tl~~~~~~~~~~~~yg~v~~d~~~g~v~~~~Ekp~~~~~~~~~ 176 (257)
T cd06428 99 LAGNPSAFFVLNADVCC-D-FPLQELLEFHKKHGASGTILGTEASREQASNYGCIVEDPSTGEVLHYVEKPETFVSDLIN 176 (257)
T ss_pred hccCCCCEEEEcCCeec-C-CCHHHHHHHHHHcCCCEEEEEEEccccccccccEEEEeCCCCeEEEEEeCCCCcccceEE
Confidence 42 23568889999984 3 368889988766543 3333333 111 12234 3456654433211 01111
Q ss_pred C-CcccChHHHHHHHHHHHhc-----------------C-CCC-CcHHHHHHhCCCCeEEEecCCCCcccCCHHHHHHHH
Q 028081 145 T-PQVIKPDLLKKGFELVNRE-----------------G-LEV-TDDVSIVEHLKHPVYITEGSYTNIKVTTPDDLLIAE 204 (214)
Q Consensus 145 ~-p~~f~~~~l~~~~~~~~~~-----------------~-~~~-~d~~~~~~~~g~~i~~v~~~~~~~~Idtp~Dl~~a~ 204 (214)
+ -+.|+.+.+. .+...... + +.+ +|....+...+ ++...+.+..|.||.||++|..+.
T Consensus 177 ~Giyi~~~~~~~-~i~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~d~~~~l~~~~-~v~~~~~~g~w~dig~~~~~~~a~ 254 (257)
T cd06428 177 CGVYLFSPEIFD-TIKKAFQSRQQEAQLGDDNNREGRAEVIRLEQDVLTPLAGSG-KLYVYKTDDFWSQIKTAGSAIYAN 254 (257)
T ss_pred EEEEEECHHHHH-HHhhhccccccccccccccccccccceeeehhhhhhHHhccC-CEEEecCCCeeecCCCHHHHHhHh
Confidence 2 3677777553 33322111 1 112 34333333333 677776677899999999999988
Q ss_pred HH
Q 028081 205 RI 206 (214)
Q Consensus 205 ~~ 206 (214)
+.
T Consensus 255 ~~ 256 (257)
T cd06428 255 RL 256 (257)
T ss_pred hc
Confidence 65
|
N-terminal domain of the M1P-guanylyltransferase A-isoform like proteins: The proteins of this family are likely to be a isoform of GDP-mannose pyrophosphorylase. Their sequences are highly conserved with mannose-1-phosphate guanyltransferase, but generally about 40-60 bases longer. GDP-mannose pyrophosphorylase (GTP: alpha-d-mannose-1-phosphate guanyltransferase) catalyzes the formation of GDP-d-mannose from GTP and alpha-d-mannose-1-Phosphate. It contains an N-terminal catalytic domain that resembles a dinucleotide-binding Rossmann fold and a C-terminal LbH fold domain. GDP-d-mannose is the activated form of mannose for formation of cell wall lipoarabinomannan and various mannose-containing glycolipids and polysaccharides. The function of GDP-mannose pyrophosphorylase is essential for cell wall integrity, morphogenesis and viability. Repre |
| >cd04183 GT2_BcE_like GT2_BcbE_like is likely involved in the biosynthesis of the polysaccharide capsule | Back alignment and domain information |
|---|
Probab=99.44 E-value=1e-11 Score=97.54 Aligned_cols=195 Identities=13% Similarity=0.098 Sum_probs=113.5
Q ss_pred CCCCceeeeeCCeehHHHHHHHHhcCCCcCeEEEEeCCCch--HHHHHHHHhc--CCcEEEec-CCccHHHHHHHHHhhc
Q 028081 3 ANMPKQYLPLLGQPIALYSFYTFSRMVEVKEIVVVCDPSYS--DIFEETKEKI--NVDLKFSL-PGKERQDSVYSGLQEV 77 (214)
Q Consensus 3 ~~~~K~l~~l~gkpli~~~i~~~~~~~~~~~iiVv~~~~~~--~~~~~~~~~~--~~~~~~~~-~~~~~~~sv~~al~~~ 77 (214)
.++||+|++++|+|||+|+++.+.+++ +++++|++..+.. ..+.+..... +..+.... ...+..+++..|+..+
T Consensus 17 ~~~pK~ll~i~g~pli~~~l~~l~~~g-~~~ivvv~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~g~~~~l~~a~~~l 95 (231)
T cd04183 17 YTYPKPLIEVDGKPMIEWVIESLAKIF-DSRFIFICRDEHNTKFHLDESLKLLAPNATVVELDGETLGAACTVLLAADLI 95 (231)
T ss_pred CCCCceeeEECCEEHHHHHHHhhhccC-CceEEEEEChHHhhhhhHHHHHHHhCCCCEEEEeCCCCCcHHHHHHHHHhhc
Confidence 368999999999999999999999886 8999999875432 1122222221 22332222 2344578888888877
Q ss_pred ccCCCeEEEEcCCCCCCCHHHHHHHHHHHHhcC--CeEEeeecccc---EEEecCCCceeeecCccc--hhhhcCCcccC
Q 028081 78 DFNSELVCIHDSARPLVLSKDVQKVLMDALRVG--AAVLGVPAKAT---IKEANSESFVVRTLDRKT--LWEMQTPQVIK 150 (214)
Q Consensus 78 ~~~~~~vl~~~~d~P~v~~~~i~~~i~~~~~~~--~~i~~~~~~~~---~~~~~~~g~v~~~~~r~~--~~~~~~p~~f~ 150 (214)
.. .+.++++.||. +.+.+ +..++..+...+ +.+.+.+...+ ...++++|.+..+.+... -+..-.-+.|+
T Consensus 96 ~~-~~~~lv~~~D~-i~~~~-~~~~~~~~~~~~~~~~i~~~~~~~~~~~~v~~d~~~~v~~~~ek~~~~~~~~~Giy~~~ 172 (231)
T cd04183 96 DN-DDPLLIFNCDQ-IVESD-LLAFLAAFRERDLDGGVLTFFSSHPRWSYVKLDENGRVIETAEKEPISDLATAGLYYFK 172 (231)
T ss_pred CC-CCCEEEEecce-eeccC-HHHHHHHhhccCCceEEEEEeCCCCCeEEEEECCCCCEEEeEEcCCCCCccEeEEEEEC
Confidence 42 35678899998 55544 556665554322 23333333222 112344566654432211 01111235666
Q ss_pred hH-HHHHHHHHHH-----h-cCCCCCcHHHHHHhCCCCeEEEec-CCCCcccCCHHHHH
Q 028081 151 PD-LLKKGFELVN-----R-EGLEVTDDVSIVEHLKHPVYITEG-SYTNIKVTTPDDLL 201 (214)
Q Consensus 151 ~~-~l~~~~~~~~-----~-~~~~~~d~~~~~~~~g~~i~~v~~-~~~~~~Idtp~Dl~ 201 (214)
.. .+.+.+.... . ..+++++....+...|.+|..+.. +..|.+|+||+||+
T Consensus 173 ~~~~~~~~l~~~~~~~~~~~~~~~~~d~i~~~~~~g~~v~~~~~~~~~w~di~t~~dl~ 231 (231)
T cd04183 173 SGSLFVEAAKKMIRKDDSVNGEFYISPLYNELILDGKKVGIYLIDKDDYHSFGTPEDLE 231 (231)
T ss_pred cHHHHHHHHHHHHhhcccccCcEEEhHHHHHHHHcCCEEEEEEeccccEEEcCChHhcC
Confidence 54 3434333211 1 124556655556667778887765 56899999999984
|
GT2_BcbE_like: The bcbE gene is one of the genes in the capsule biosynthetic locus of Pasteurella multocida. Its deducted product is likely involved in the biosynthesis of the polysaccharide capsule, which is found on surface of a wide range of bacteria. It is a subfamily of Glycosyltransferase Family GT2, which includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. |
| >PRK05293 glgC glucose-1-phosphate adenylyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.44 E-value=1.1e-11 Score=104.49 Aligned_cols=200 Identities=14% Similarity=0.078 Sum_probs=123.1
Q ss_pred CCCceeeeeCCe-ehHHHHHHHHhcCCCcCeEEEEeCCCchHHHHHHHHh---cCC-----cEEE----ecC-----Ccc
Q 028081 4 NMPKQYLPLLGQ-PIALYSFYTFSRMVEVKEIVVVCDPSYSDIFEETKEK---INV-----DLKF----SLP-----GKE 65 (214)
Q Consensus 4 ~~~K~l~~l~gk-pli~~~i~~~~~~~~~~~iiVv~~~~~~~~~~~~~~~---~~~-----~~~~----~~~-----~~~ 65 (214)
.+||+|+|++|| |||+|+++++.+++ +++|+|++++.. +.+.+.+.. ++. .+.+ ... ..+
T Consensus 23 ~~PK~llpv~gk~pli~~~l~~l~~~G-i~~i~iv~~~~~-~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~G 100 (380)
T PRK05293 23 NIAKPAVPFGGKYRIIDFTLSNCANSG-IDTVGVLTQYQP-LELNNHIGIGSPWDLDRINGGVTILPPYSESEGGKWYKG 100 (380)
T ss_pred CCccceeeeCCceeehhHHHHHHHhCC-CCEEEEEecCCH-HHHHHHHhCCCcccccCCCCCEEEeCCcccCCCCcccCC
Confidence 689999999999 89999999999875 999999999875 455555432 111 1222 111 023
Q ss_pred HHHHHHHHHhhccc-CCCeEEEEcCCCCCCCHHHHHHHHHHHHhcCC--eEEeeec--ccc----EEEecCCCceeeecC
Q 028081 66 RQDSVYSGLQEVDF-NSELVCIHDSARPLVLSKDVQKVLMDALRVGA--AVLGVPA--KAT----IKEANSESFVVRTLD 136 (214)
Q Consensus 66 ~~~sv~~al~~~~~-~~~~vl~~~~d~P~v~~~~i~~~i~~~~~~~~--~i~~~~~--~~~----~~~~~~~g~v~~~~~ 136 (214)
..++++.|+..+.. ..+.++++.||. +....+.++++.+...++ .+.+... .++ +...+++|.+....+
T Consensus 101 ta~al~~a~~~l~~~~~~~~lV~~gD~--l~~~d~~~ll~~h~~~~~~~tl~~~~~~~~~~~~yG~v~~d~~g~V~~~~e 178 (380)
T PRK05293 101 TAHAIYQNIDYIDQYDPEYVLILSGDH--IYKMDYDKMLDYHKEKEADVTIAVIEVPWEEASRFGIMNTDENMRIVEFEE 178 (380)
T ss_pred cHHHHHHHHHHHHhCCCCEEEEecCCE--EEcCCHHHHHHHHHhcCCCEEEEEEEcchhhccccCEEEECCCCcEEEEEe
Confidence 46888888888752 136788999997 445578888887765443 2332222 222 112344455544322
Q ss_pred ccc---hhhhcC-CcccChHHHHHHHHHHHhcC---C-CCCcHHHHHHhCCCCeEEEecCCCCcccCCHHHHHHHHHHh
Q 028081 137 RKT---LWEMQT-PQVIKPDLLKKGFELVNREG---L-EVTDDVSIVEHLKHPVYITEGSYTNIKVTTPDDLLIAERIL 207 (214)
Q Consensus 137 r~~---~~~~~~-p~~f~~~~l~~~~~~~~~~~---~-~~~d~~~~~~~~g~~i~~v~~~~~~~~Idtp~Dl~~a~~~~ 207 (214)
+.. .....+ -+.|+...|..++....... . +.+|....+...|.++..+..+..|.+|+||+||..|+..+
T Consensus 179 Kp~~~~~~~~~~Giyi~~~~~l~~~l~~~~~~~~~~~~~~~d~i~~l~~~~~~v~~~~~~g~w~digt~~~~~~a~~~~ 257 (380)
T PRK05293 179 KPKNPKSNLASMGIYIFNWKRLKEYLIEDEKNPNSSHDFGKNVIPLYLEEGEKLYAYPFKGYWKDVGTIESLWEANMEL 257 (380)
T ss_pred CCCCCCcceeeeEEEEEcHHHHHHHHHHHhhcCCchhhhHHHHHHHHhhcCCeEEEEEeCCEEEeCCCHHHHHHHHHHH
Confidence 110 111122 36788776666554432111 1 22344444555677888776666899999999999998544
|
|
| >cd06425 M1P_guanylylT_B_like_N N-terminal domain of the M1P-guanylyltransferase B-isoform like proteins | Back alignment and domain information |
|---|
Probab=99.43 E-value=1.6e-11 Score=96.59 Aligned_cols=195 Identities=12% Similarity=0.163 Sum_probs=118.1
Q ss_pred CCCceeeeeCCeehHHHHHHHHhcCCCcCeEEEEeCCCchHHHHHHHHh----cCCcEEEec--CCccHHHHHHHHHhhc
Q 028081 4 NMPKQYLPLLGQPIALYSFYTFSRMVEVKEIVVVCDPSYSDIFEETKEK----INVDLKFSL--PGKERQDSVYSGLQEV 77 (214)
Q Consensus 4 ~~~K~l~~l~gkpli~~~i~~~~~~~~~~~iiVv~~~~~~~~~~~~~~~----~~~~~~~~~--~~~~~~~sv~~al~~~ 77 (214)
+.||+|++++|+|||.|+++.+..++ +++|+|++++.. +.+.+.+.. .+..+.+.. ...+..+++..|...+
T Consensus 20 ~~pK~llpv~g~pli~~~l~~l~~~g-~~~v~iv~~~~~-~~~~~~l~~~~~~~~~~i~~~~~~~~~G~~~al~~a~~~~ 97 (233)
T cd06425 20 TVPKPLVEFCNKPMIEHQIEALAKAG-VKEIILAVNYRP-EDMVPFLKEYEKKLGIKITFSIETEPLGTAGPLALARDLL 97 (233)
T ss_pred CCCCccCeECCcchHHHHHHHHHHCC-CcEEEEEeeeCH-HHHHHHHhcccccCCeEEEeccCCCCCccHHHHHHHHHHh
Confidence 68999999999999999999999875 899999999775 344444442 233333321 1233478899998888
Q ss_pred ccCCCeEEEEcCCCCCCCHHHHHHHHHHHHhcC--CeEEeeecccc----EEEecC-CCceeeecCcc--ch-hhhcC-C
Q 028081 78 DFNSELVCIHDSARPLVLSKDVQKVLMDALRVG--AAVLGVPAKAT----IKEANS-ESFVVRTLDRK--TL-WEMQT-P 146 (214)
Q Consensus 78 ~~~~~~vl~~~~d~P~v~~~~i~~~i~~~~~~~--~~i~~~~~~~~----~~~~~~-~g~v~~~~~r~--~~-~~~~~-p 146 (214)
....+.++++.||..+ + ..++++++.++..+ +.+.+.+..++ +..+++ +|.+....+.. .. ....+ -
T Consensus 98 ~~~~~~~lv~~~D~~~-~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~v~~d~~~~~v~~~~ekp~~~~~~~~~~Gi 175 (233)
T cd06425 98 GDDDEPFFVLNSDVIC-D-FPLAELLDFHKKHGAEGTILVTKVEDPSKYGVVVHDENTGRIERFVEKPKVFVGNKINAGI 175 (233)
T ss_pred ccCCCCEEEEeCCEee-C-CCHHHHHHHHHHcCCCEEEEEEEcCCccccCeEEEcCCCCEEEEEEECCCCCCCCEEEEEE
Confidence 5322346778899754 2 33678888776543 34555555442 222343 45554432211 00 01112 3
Q ss_pred cccChHHHHHHHHHHHhcCCCC-CcHHHHHHhCCCCeEEEecCCCCcccCCHHHHHHHHHHh
Q 028081 147 QVIKPDLLKKGFELVNREGLEV-TDDVSIVEHLKHPVYITEGSYTNIKVTTPDDLLIAERIL 207 (214)
Q Consensus 147 ~~f~~~~l~~~~~~~~~~~~~~-~d~~~~~~~~g~~i~~v~~~~~~~~Idtp~Dl~~a~~~~ 207 (214)
+.|+.+.|.. +.. ....+ .+....+... .++...+.+..+.||+||+||..|+..+
T Consensus 176 yi~~~~~l~~-l~~---~~~~~~~~~~~~l~~~-~~v~~~~~~g~w~digt~~~~~~a~~~~ 232 (233)
T cd06425 176 YILNPSVLDR-IPL---RPTSIEKEIFPKMASE-GQLYAYELPGFWMDIGQPKDFLKGMSLY 232 (233)
T ss_pred EEECHHHHHh-ccc---CcccchhhhHHHHHhc-CCEEEEeeCCEEEcCCCHHHHHHHHHHh
Confidence 6777766543 221 11112 2222223333 4787776667899999999999998754
|
GDP-mannose pyrophosphorylase (GTP: alpha-d-mannose-1-phosphate guanyltransferase) catalyzes the formation of GDP-d-mannose from GTP and alpha-d-mannose-1-Phosphate. It contains an N-terminal catalytic domain and a C-terminal Lefthanded-beta-Helix fold domain. GDP-d-mannose is the activated form of mannose for formation of cell wall lipoarabinomannan and various mannose-containing glycolipids and polysaccharides. The function of GDP-mannose pyrophosphorylase is essential for cell wall integrity, morphogenesis and viability. Repression of GDP-mannose pyrophosphorylase in yeast leads to phenotypes, such as cell lysis, defective cell wall, and failure of polarized growth and cell separation. |
| >PRK10122 GalU regulator GalF; Provisional | Back alignment and domain information |
|---|
Probab=99.41 E-value=3.3e-11 Score=98.18 Aligned_cols=198 Identities=15% Similarity=0.180 Sum_probs=118.9
Q ss_pred CCCCceeeeeCCeehHHHHHHHHhcCCCcCeEEEEeCCCchHHHHHHHHh-------------------------cCCcE
Q 028081 3 ANMPKQYLPLLGQPIALYSFYTFSRMVEVKEIVVVCDPSYSDIFEETKEK-------------------------INVDL 57 (214)
Q Consensus 3 ~~~~K~l~~l~gkpli~~~i~~~~~~~~~~~iiVv~~~~~~~~~~~~~~~-------------------------~~~~~ 57 (214)
..+||+|+|++|||||+|+++.+.+++ +++|+|++++.. +.+.+.... ++.++
T Consensus 22 ~~~PK~llpi~gkpiI~~~l~~l~~~G-i~~i~iv~~~~~-~~i~~~~~~~~~l~~~~~~~~k~~~l~~~~~~~~~~~~i 99 (297)
T PRK10122 22 KAIPKEMLPIVDKPMIQYIVDEIVAAG-IKEIVLVTHASK-NAVENHFDTSYELESLLEQRVKRQLLAEVQSICPPGVTI 99 (297)
T ss_pred CCCCceeeEECCEEHHHHHHHHHHHCC-CCEEEEEcCCCh-HHHHHHHhcchhHHHHHhhcchhhhHHhhhhccCCCceE
Confidence 468999999999999999999999985 999999998865 334443321 12334
Q ss_pred EEecC--CccHHHHHHHHHhhcccCCCeEEEEcCCCCCCCHH-------HHHHHHHHHHhcCC-eEEeeec-ccc----E
Q 028081 58 KFSLP--GKERQDSVYSGLQEVDFNSELVCIHDSARPLVLSK-------DVQKVLMDALRVGA-AVLGVPA-KAT----I 122 (214)
Q Consensus 58 ~~~~~--~~~~~~sv~~al~~~~~~~~~vl~~~~d~P~v~~~-------~i~~~i~~~~~~~~-~i~~~~~-~~~----~ 122 (214)
.++.+ ..+..+++.+|..++. +.+++ ++.||. +++++ .+..+++.+...++ ++.+... .++ +
T Consensus 100 ~~~~q~~~lGtg~al~~a~~~l~-~~~fv-vi~gD~-l~~~~~~~~~~~dl~~li~~h~~~~~~~~~~~~~~~~~~~yGv 176 (297)
T PRK10122 100 MNVRQGQPLGLGHSILCARPAIG-DNPFV-VVLPDV-VIDDASADPLRYNLAAMIARFNETGRSQVLAKRMPGDLSEYSV 176 (297)
T ss_pred EEeecCCcCchHHHHHHHHHHcC-CCCEE-EEECCe-eccCccccccchhHHHHHHHHHHhCCcEEEEEECCCCCCCceE
Confidence 44322 2234788999998884 23454 445887 66542 68889988765543 3333332 121 1
Q ss_pred EEec----CCCc---eeeecCccc------hhhhcC-CcccChHHHHHHHHHHHhc--C-CCCCcHHHHHHhCCCCeEEE
Q 028081 123 KEAN----SESF---VVRTLDRKT------LWEMQT-PQVIKPDLLKKGFELVNRE--G-LEVTDDVSIVEHLKHPVYIT 185 (214)
Q Consensus 123 ~~~~----~~g~---v~~~~~r~~------~~~~~~-p~~f~~~~l~~~~~~~~~~--~-~~~~d~~~~~~~~g~~i~~v 185 (214)
...+ .+|. +....+... ...+.+ -++|+.+.+.. +...... + ++++|....+... .++...
T Consensus 177 v~~d~~~~~~g~v~~I~~~~EKp~~~~~~~s~~~~~GiYi~~~~i~~~-l~~~~~~~~~e~~ltd~i~~l~~~-~~v~~~ 254 (297)
T PRK10122 177 IQTKEPLDREGKVSRIVEFIEKPDQPQTLDSDLMAVGRYVLSADIWPE-LERTEPGAWGRIQLTDAIAELAKK-QSVDAM 254 (297)
T ss_pred EEecCcccCCCCeeeEEEEEECCCCcccCCccEEEEEEEEECHHHHHH-HHhCCCCCCCeeeHHHHHHHHHhC-CCEEEE
Confidence 1222 1332 332221110 001122 36777765443 3332111 2 4567665555544 467766
Q ss_pred ecCCCCcccCCHHHHHHHHHHh
Q 028081 186 EGSYTNIKVTTPDDLLIAERIL 207 (214)
Q Consensus 186 ~~~~~~~~Idtp~Dl~~a~~~~ 207 (214)
..+..|+||.+|+|+..|..-+
T Consensus 255 ~~~G~w~DiG~p~~~~~a~~~~ 276 (297)
T PRK10122 255 LMTGDSYDCGKKMGYMQAFVKY 276 (297)
T ss_pred EeCCEEEcCCCHHHHHHHHHHH
Confidence 6666899999999999887655
|
|
| >TIGR02092 glgD glucose-1-phosphate adenylyltransferase, GlgD subunit | Back alignment and domain information |
|---|
Probab=99.40 E-value=1.3e-11 Score=103.57 Aligned_cols=202 Identities=12% Similarity=0.076 Sum_probs=118.4
Q ss_pred CCCCceeeeeCCe-ehHHHHHHHHhcCCCcCeEEEEeCCCchHHHHHHHHh---cCCcE------E-Ee-cC---CccHH
Q 028081 3 ANMPKQYLPLLGQ-PIALYSFYTFSRMVEVKEIVVVCDPSYSDIFEETKEK---INVDL------K-FS-LP---GKERQ 67 (214)
Q Consensus 3 ~~~~K~l~~l~gk-pli~~~i~~~~~~~~~~~iiVv~~~~~~~~~~~~~~~---~~~~~------~-~~-~~---~~~~~ 67 (214)
.++||+|+|++|| |||+|+++.+.+++ +++|+|++++...+.+.+.+.. ++.+. . +. .. +++..
T Consensus 21 ~~~PKpLlpV~gk~PlIe~~l~~L~~~G-i~~I~iv~~~~~~~~I~~~l~~~~~~~~~~~~~~~~~~~~~e~~~l~tg~~ 99 (369)
T TIGR02092 21 KVRPLASLPFGGRYRLIDFPLSNMVNAG-IRNVFIFFKNKERQSLFDHLGSGREWDLHRKRDGLFVFPYNDRDDLSEGGK 99 (369)
T ss_pred cCCcccccccCCeeeEEEEEhhhhhccC-CCEEEEEeCCCcHHHHHHHHhCCCCCCcccccCcEEEEeccCCCCcccChH
Confidence 4689999999999 99999999999985 9999999998652256665542 22221 1 11 11 11234
Q ss_pred HHHHHHHhhccc-CCCeEEEEcCCCCCCCHHHHHHHHHHHHhcCC-e-EEeeecc--cc-----EEEecCCCceeeecC-
Q 028081 68 DSVYSGLQEVDF-NSELVCIHDSARPLVLSKDVQKVLMDALRVGA-A-VLGVPAK--AT-----IKEANSESFVVRTLD- 136 (214)
Q Consensus 68 ~sv~~al~~~~~-~~~~vl~~~~d~P~v~~~~i~~~i~~~~~~~~-~-i~~~~~~--~~-----~~~~~~~g~v~~~~~- 136 (214)
.++..+.+.+.. ..+.++++.||. +....+..+++.+...++ + +.+.++. ++ +...+++|.+.....
T Consensus 100 ~a~~~a~~~l~~~~~~~~lvlnGD~--l~~~dl~~ll~~h~~~~a~~tl~~~~v~~~~~~~~g~vv~~~~~g~v~~~~~~ 177 (369)
T TIGR02092 100 RYFSQNLEFLKRSTSEYTVVLNSHM--VCNIDLKAVLKYHEETGKDITVVYKKVKPADASEYDTILRFDESGKVKSIGQN 177 (369)
T ss_pred HHHHHHHHHHHhCCCCEEEEECCCE--EEecCHHHHHHHHHHcCCCEEEEEEecCHHHccccCcEEEEcCCCCEEecccc
Confidence 567777777641 236789999998 555678888888766544 2 3333433 11 122333454433211
Q ss_pred --ccchhhhc-CCcccChHHHHHHHHHHHhcCCCCCcHHHHHHh--CCCCeEEEecCCCCcccCCHHHHHHHHH-Hhh
Q 028081 137 --RKTLWEMQ-TPQVIKPDLLKKGFELVNREGLEVTDDVSIVEH--LKHPVYITEGSYTNIKVTTPDDLLIAER-ILN 208 (214)
Q Consensus 137 --r~~~~~~~-~p~~f~~~~l~~~~~~~~~~~~~~~d~~~~~~~--~g~~i~~v~~~~~~~~Idtp~Dl~~a~~-~~~ 208 (214)
...-.... .-+.|+.+.|.+++......+. .+....++.. .+.++.....+..|+||+||+||..|+. +++
T Consensus 178 ~~~~~~~~~~~Giyi~~~~~l~~~l~~~~~~~~-~~~~~d~i~~~~~~~~v~~~~~~g~w~dIgt~~~l~~a~~~~l~ 254 (369)
T TIGR02092 178 LNPEEEENISLDIYIVSTDLLIELLYECIQRGK-LTSLEELIRENLKELNINAYEYTGYLANINSVKSYYKANMDLLD 254 (369)
T ss_pred CCCCCcceeeeeEEEEEHHHHHHHHHHHhhcCc-cccHHHHHHHHhccCcEEEEecCCceeEcCCHHHHHHHHHHHhC
Confidence 00000111 2367777666555543222221 1111122222 2456776666667899999999999984 443
|
This family is GlgD, an apparent regulatory protein that appears in an alpha2/beta2 heterotetramer with GlgC (glucose-1-phosphate adenylyltransferase, TIGR02091) in a subset of bacteria that use GlgC for glycogen biosynthesis. |
| >PRK00844 glgC glucose-1-phosphate adenylyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.40 E-value=1.8e-11 Score=104.04 Aligned_cols=201 Identities=13% Similarity=0.112 Sum_probs=122.2
Q ss_pred CCCCceeeeeCCe-ehHHHHHHHHhcCCCcCeEEEEeCCCchHHHHHHHHh-cC---CcEEEe---cC--------CccH
Q 028081 3 ANMPKQYLPLLGQ-PIALYSFYTFSRMVEVKEIVVVCDPSYSDIFEETKEK-IN---VDLKFS---LP--------GKER 66 (214)
Q Consensus 3 ~~~~K~l~~l~gk-pli~~~i~~~~~~~~~~~iiVv~~~~~~~~~~~~~~~-~~---~~~~~~---~~--------~~~~ 66 (214)
+.+||+|+|++|| |||+|+++.+.+++ +++|+|++++.. +.+.+.+.. +. ....++ .. ..+.
T Consensus 24 ~~~PK~llPv~gk~plI~~~L~~l~~~G-i~~i~iv~~~~~-~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lGt 101 (407)
T PRK00844 24 ADRAKPAVPFGGSYRLIDFVLSNLVNSG-YLRIYVLTQYKS-HSLDRHISQTWRLSGLLGNYITPVPAQQRLGKRWYLGS 101 (407)
T ss_pred cCCcccceeeCCcceEhHHHHHHHHHCC-CCEEEEEeccCH-HHHHHHHHhCcCccccCCCeEEECCcccCCCCCcccCC
Confidence 5789999999999 99999999999975 999999999875 445555532 11 111111 10 1223
Q ss_pred HHHHHHHHhhcccC-CCeEEEEcCCCCCCCHHHHHHHHHHHHhcCC--eEEeeec--ccc----EEEecCCCceeeecCc
Q 028081 67 QDSVYSGLQEVDFN-SELVCIHDSARPLVLSKDVQKVLMDALRVGA--AVLGVPA--KAT----IKEANSESFVVRTLDR 137 (214)
Q Consensus 67 ~~sv~~al~~~~~~-~~~vl~~~~d~P~v~~~~i~~~i~~~~~~~~--~i~~~~~--~~~----~~~~~~~g~v~~~~~r 137 (214)
.++++.++..+..+ .+.++++.||. +....+.++++.+...++ .+.+..+ .++ +...+++|.+....++
T Consensus 102 a~al~~a~~~i~~~~~~~~lv~~gD~--v~~~dl~~l~~~h~~~~~~~ti~~~~~~~~~~~~~Gvv~~d~~g~v~~~~eK 179 (407)
T PRK00844 102 ADAIYQSLNLIEDEDPDYVVVFGADH--VYRMDPRQMVDFHIESGAGVTVAAIRVPREEASAFGVIEVDPDGRIRGFLEK 179 (407)
T ss_pred HHHHHHHHHHHHhcCCCEEEEecCCE--EEcCCHHHHHHHHHhcCCcEEEEEEecchHHcccCCEEEECCCCCEEEEEEC
Confidence 67888888888532 36788999998 445678889988766544 2233222 222 2223445666544322
Q ss_pred cc----------hhhhcC-CcccChHHHHHHHHHHHh---cCCCC-CcHHHHHHhCCCCeEEEec------------CCC
Q 028081 138 KT----------LWEMQT-PQVIKPDLLKKGFELVNR---EGLEV-TDDVSIVEHLKHPVYITEG------------SYT 190 (214)
Q Consensus 138 ~~----------~~~~~~-p~~f~~~~l~~~~~~~~~---~~~~~-~d~~~~~~~~g~~i~~v~~------------~~~ 190 (214)
.. ....++ -+.|+.+.|.+++..... ..+++ +|....+...+ ++..... ...
T Consensus 180 p~~~~~~~~~~~~~~~~~Giyi~~~~~l~~~l~~~~~~~~~~~~~~~dii~~l~~~~-~v~~~~~~~~~~~g~n~~~~g~ 258 (407)
T PRK00844 180 PADPPGLPDDPDEALASMGNYVFTTDALVDALRRDAADEDSSHDMGGDIIPRLVERG-RAYVYDFSTNEVPGATERDRGY 258 (407)
T ss_pred CCCcccccCCCCCcEEEeEEEEEeHHHHHHHHHHhhcCCcccccchhhHHHHHhccC-eEEEEEcccccccccccCCCCE
Confidence 10 011222 378888776665553211 11333 45444444444 5655432 346
Q ss_pred CcccCCHHHHHHHHHHhh
Q 028081 191 NIKVTTPDDLLIAERILN 208 (214)
Q Consensus 191 ~~~Idtp~Dl~~a~~~~~ 208 (214)
|.||.+|+||..|+..+-
T Consensus 259 w~Digt~~~y~~a~~~lL 276 (407)
T PRK00844 259 WRDVGTIDAYYDAHMDLL 276 (407)
T ss_pred EEECCCHHHHHHHHHHHh
Confidence 899999999999876644
|
|
| >cd02508 ADP_Glucose_PP ADP-glucose pyrophosphorylase is involved in the biosynthesis of glycogen or starch | Back alignment and domain information |
|---|
Probab=99.35 E-value=3.7e-11 Score=92.49 Aligned_cols=164 Identities=15% Similarity=0.134 Sum_probs=104.7
Q ss_pred CCCCceeeeeCCe-ehHHHHHHHHhcCCCcCeEEEEeCCCchHHHHHHHHh---cCCc-----EEEec--------CCcc
Q 028081 3 ANMPKQYLPLLGQ-PIALYSFYTFSRMVEVKEIVVVCDPSYSDIFEETKEK---INVD-----LKFSL--------PGKE 65 (214)
Q Consensus 3 ~~~~K~l~~l~gk-pli~~~i~~~~~~~~~~~iiVv~~~~~~~~~~~~~~~---~~~~-----~~~~~--------~~~~ 65 (214)
++.||+|++++|+ |||+|+++.+..++ +++|+|++++.. +.+.+.+.. ++.+ +.+.. ...+
T Consensus 17 ~~~pK~llpv~g~~pli~~~l~~l~~~g-i~~iivv~~~~~-~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G 94 (200)
T cd02508 17 KKRAKPAVPFGGRYRLIDFPLSNMVNSG-IRNVGVLTQYKS-RSLNDHLGSGKEWDLDRKNGGLFILPPQQRKGGDWYRG 94 (200)
T ss_pred cCCcceeeEECCeeeeHHHHHHHHHHCC-CCEEEEEeCCCh-HHHHHHHhCCCcccCCCCCCCEEEeCcccCCCCCcccC
Confidence 4689999999999 99999999999875 899999999875 445555432 1111 22322 1123
Q ss_pred HHHHHHHHHhhccc-CCCeEEEEcCCCCCCCHHHHHHHHHHHHhcCCeEEeeeccccEEEecCCCceeeecCccchhhhc
Q 028081 66 RQDSVYSGLQEVDF-NSELVCIHDSARPLVLSKDVQKVLMDALRVGAAVLGVPAKATIKEANSESFVVRTLDRKTLWEMQ 144 (214)
Q Consensus 66 ~~~sv~~al~~~~~-~~~~vl~~~~d~P~v~~~~i~~~i~~~~~~~~~i~~~~~~~~~~~~~~~g~v~~~~~r~~~~~~~ 144 (214)
..++++.|...+.. +.+.++++.||+ +....+.++++.+...++.+++.-. +. .
T Consensus 95 ta~al~~a~~~i~~~~~~~~lv~~gD~--v~~~~~~~~l~~~~~~~~~~t~~~~------~~-~---------------- 149 (200)
T cd02508 95 TADAIYQNLDYIERSDPEYVLILSGDH--IYNMDYREMLDFHIESGADITVVYK------AS-M---------------- 149 (200)
T ss_pred cHHHHHHHHHHHHhCCCCEEEEecCCE--EEecCHHHHHHHHHHcCCCEEEEEh------hc-C----------------
Confidence 47889999888742 246788999999 5667899999877665443322111 11 1
Q ss_pred CCcccChHHHHHHHHHHHhc-C-CCCCcHHHHHHhCCCCeEEEecCCCCccc
Q 028081 145 TPQVIKPDLLKKGFELVNRE-G-LEVTDDVSIVEHLKHPVYITEGSYTNIKV 194 (214)
Q Consensus 145 ~p~~f~~~~l~~~~~~~~~~-~-~~~~d~~~~~~~~g~~i~~v~~~~~~~~I 194 (214)
.++.|+.+.+..++...... + .+++|....+.+. .++.....+..|+||
T Consensus 150 g~yi~~~~~~~~~l~~~~~~~~~~~~~d~i~~l~~~-~~v~~~~~~g~w~di 200 (200)
T cd02508 150 GIYIFSKDLLIELLEEDAADGSHDFGKDIIPAMLKK-LKIYAYEFNGYWADI 200 (200)
T ss_pred EEEEEEHHHHHHHHHHHhccCcchhHHHHHHHHhcc-CcEEEEEeCCeEecC
Confidence 25677776665554432212 2 4566665555544 467766555556664
|
ADP-glucose pyrophosphorylase (glucose-1-phosphate adenylyltransferase) catalyzes a very important step in the biosynthesis of alpha 1,4-glucans (glycogen or starch) in bacteria and plants: synthesis of the activated glucosyl donor, ADP-glucose, from glucose-1-phosphate and ATP. ADP-glucose pyrophosphorylase is a tetrameric allosterically regulated enzyme. While a homotetramer in bacteria, in plant chloroplasts and amyloplasts, it is a heterotetramer of two different, yet evolutionary related, subunits. There are a number of conserved regions in the sequence of bacterial and plant ADP-glucose pyrophosphorylase subunits. It is a subfamily of a very diverse glycosy transferase family 2. |
| >cd04181 NTP_transferase NTP_transferases catalyze the transfer of nucleotides onto phosphosugars | Back alignment and domain information |
|---|
Probab=99.32 E-value=1.4e-10 Score=90.00 Aligned_cols=185 Identities=17% Similarity=0.198 Sum_probs=110.6
Q ss_pred CCCCceeeeeCCeehHHHHHHHHhcCCCcCeEEEEeCCCchHHHHHHHHh---cCCcEEEecC--CccHHHHHHHHHhhc
Q 028081 3 ANMPKQYLPLLGQPIALYSFYTFSRMVEVKEIVVVCDPSYSDIFEETKEK---INVDLKFSLP--GKERQDSVYSGLQEV 77 (214)
Q Consensus 3 ~~~~K~l~~l~gkpli~~~i~~~~~~~~~~~iiVv~~~~~~~~~~~~~~~---~~~~~~~~~~--~~~~~~sv~~al~~~ 77 (214)
.++||++++++|+|||.|+++.+..++ +++|+|++++.. +.+.+.+.. ++..+.++.. ..+..++++.|+..+
T Consensus 17 ~~~pK~ll~v~g~pli~~~l~~l~~~g-~~~i~vv~~~~~-~~i~~~~~~~~~~~~~i~~~~~~~~~g~~~al~~~~~~~ 94 (217)
T cd04181 17 DTRPKPLLPIAGKPILEYIIERLARAG-IDEIILVVGYLG-EQIEEYFGDGSKFGVNIEYVVQEEPLGTAGAVRNAEDFL 94 (217)
T ss_pred cCCCccccEECCeeHHHHHHHHHHHCC-CCEEEEEeccCH-HHHHHHHcChhhcCceEEEEeCCCCCccHHHHHHhhhhc
Confidence 357999999999999999999999886 899999999764 445555543 2334544433 234578899998887
Q ss_pred ccCCCeEEEEcCCCCCCCHHHHHHHHHHHHhcC--CeEEeeecccc----EEEecCCCceeeecCccch---hhhc-CCc
Q 028081 78 DFNSELVCIHDSARPLVLSKDVQKVLMDALRVG--AAVLGVPAKAT----IKEANSESFVVRTLDRKTL---WEMQ-TPQ 147 (214)
Q Consensus 78 ~~~~~~vl~~~~d~P~v~~~~i~~~i~~~~~~~--~~i~~~~~~~~----~~~~~~~g~v~~~~~r~~~---~~~~-~p~ 147 (214)
. .+.++++.||.- .+. .+..+++.+...+ +.+.+.+..+. ....+++|.+..+.++... .... .-+
T Consensus 95 ~--~~~~lv~~~D~~-~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~d~~~~v~~~~ek~~~~~~~~~~~Giy 170 (217)
T cd04181 95 G--DDDFLVVNGDVL-TDL-DLSELLRFHREKGADATIAVKEVEDPSRYGVVELDDDGRVTRFVEKPTLPESNLANAGIY 170 (217)
T ss_pred C--CCCEEEEECCee-cCc-CHHHHHHHHHhcCCCEEEEEEEcCCCCcceEEEEcCCCcEEEEEECCCCCCCCEEEEEEE
Confidence 3 467899999994 344 4677777665443 34445554332 1223444566544322110 0111 125
Q ss_pred ccChHHHHHHHHHHHhc-CCCCCcHHHHHHhCCCCeEEEecCCCCcccC
Q 028081 148 VIKPDLLKKGFELVNRE-GLEVTDDVSIVEHLKHPVYITEGSYTNIKVT 195 (214)
Q Consensus 148 ~f~~~~l~~~~~~~~~~-~~~~~d~~~~~~~~g~~i~~v~~~~~~~~Id 195 (214)
.|+...+ +.+.....+ ..++++....+... .++..++.+..+.||.
T Consensus 171 ~~~~~~~-~~l~~~~~~~~~~~~~~~~~l~~~-~~v~~~~~~g~w~dig 217 (217)
T cd04181 171 IFEPEIL-DYIPEILPRGEDELTDAIPLLIEE-GKVYGYPVDGYWLDIG 217 (217)
T ss_pred EECHHHH-HhhhhcCCcccccHHHHHHHHHhc-CCEEEEEcCCEEecCC
Confidence 6776554 444432111 23344444434333 5777776666677663
|
Nucleotidyltransferases transfer nucleotides onto phosphosugars. The enzyme family includes Alpha-D-Glucose-1-Phosphate Cytidylyltransferase, Mannose-1-phosphate guanyltransferase, and Glucose-1-phosphate thymidylyltransferase. The products are activated sugars that are precursors for synthesis of lipopolysaccharide, glycolipids and polysaccharides. |
| >TIGR02091 glgC glucose-1-phosphate adenylyltransferase | Back alignment and domain information |
|---|
Probab=99.31 E-value=1.3e-10 Score=97.30 Aligned_cols=200 Identities=16% Similarity=0.138 Sum_probs=119.5
Q ss_pred CCCceeeeeCCe-ehHHHHHHHHhcCCCcCeEEEEeCCCchHHHHHHHHh-cCC------cEEEec------C---CccH
Q 028081 4 NMPKQYLPLLGQ-PIALYSFYTFSRMVEVKEIVVVCDPSYSDIFEETKEK-INV------DLKFSL------P---GKER 66 (214)
Q Consensus 4 ~~~K~l~~l~gk-pli~~~i~~~~~~~~~~~iiVv~~~~~~~~~~~~~~~-~~~------~~~~~~------~---~~~~ 66 (214)
+.||+|+|++|+ |||+|+++.+.+++ +++|+|++++.. +.+.+.+.. ++. .+.+.. . ..+.
T Consensus 18 ~~pK~llpv~g~~pli~~~l~~l~~~g-i~~i~iv~~~~~-~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gt 95 (361)
T TIGR02091 18 RRAKPAVPFGGKYRIIDFPLSNCINSG-IRRIGVLTQYKS-HSLNRHIQRGWDFDGFIDGFVTLLPAQQRESGTDWYQGT 95 (361)
T ss_pred CCccccceecceeeEeeehhhhhhhcC-CceEEEEeccCh-HHHHHHHHhccCccCccCCCEEEeCCcccCCCCccccCc
Confidence 589999999999 89999999999885 999999999875 345554432 110 122211 0 0223
Q ss_pred HHHHHHHHhhccc-CCCeEEEEcCCCCCCCHHHHHHHHHHHHhcCC--eEEeeecc--cc----EEEecCCCceeeecCc
Q 028081 67 QDSVYSGLQEVDF-NSELVCIHDSARPLVLSKDVQKVLMDALRVGA--AVLGVPAK--AT----IKEANSESFVVRTLDR 137 (214)
Q Consensus 67 ~~sv~~al~~~~~-~~~~vl~~~~d~P~v~~~~i~~~i~~~~~~~~--~i~~~~~~--~~----~~~~~~~g~v~~~~~r 137 (214)
.++++.|+..+.. ..+.++++.||. +....+..+++.+...++ .+.+.+.. +. +..++++|.+..+.+.
T Consensus 96 ~~al~~a~~~~~~~~~~~~lv~~gD~--l~~~~l~~~l~~~~~~~~~~ti~~~~~~~~~~~~~g~v~~d~~~~v~~~~ek 173 (361)
T TIGR02091 96 ADAVYQNLDLIEDYDPEYVLILSGDH--IYKMDYEKMLDYHIESGADVTIACIPVPRKEASRFGVMQVDEDGRIVDFEEK 173 (361)
T ss_pred HHHHHHHHHHHHhcCCCEEEEecCCE--EEcCCHHHHHHHHHHcCCCEEEEEEecChHhcccccEEEECCCCCEEEEEEC
Confidence 6788888887742 236688899998 445568888887765433 33333332 11 2223444555433221
Q ss_pred ----cch------hhhc-CCcccChHHHHHHHHHHHhcC---CCC-CcHHHHHHhCCCCeEEEecCCCCcccCCHHHHHH
Q 028081 138 ----KTL------WEMQ-TPQVIKPDLLKKGFELVNREG---LEV-TDDVSIVEHLKHPVYITEGSYTNIKVTTPDDLLI 202 (214)
Q Consensus 138 ----~~~------~~~~-~p~~f~~~~l~~~~~~~~~~~---~~~-~d~~~~~~~~g~~i~~v~~~~~~~~Idtp~Dl~~ 202 (214)
... +... .-+.|+...|...+....+.+ ..+ ++....+...+ ++..+..+..|.+|+|++||..
T Consensus 174 p~~~~~~~~~~~~~~~~~Giyi~~~~~l~~~l~~~~~~~~~~~~~~~d~l~~l~~~~-~v~~~~~~~~w~digt~~~~~~ 252 (361)
T TIGR02091 174 PANPPSIPGMPDFALASMGIYIFDKDVLKELLEEDADDPESSHDFGKDIIPRALEEG-SVQAYLFSGYWRDVGTIDSFWE 252 (361)
T ss_pred CCCcccccccccccEEeeeEEEEcHHHHHHHHHHHhhcCCcccccHHHHHHHHhhcC-ceEEEeeCCEEEECCCHHHHHH
Confidence 111 0112 246778777655554432111 111 23333333333 6776665677999999999999
Q ss_pred HHHHhh
Q 028081 203 AERILN 208 (214)
Q Consensus 203 a~~~~~ 208 (214)
|+..+-
T Consensus 253 a~~~~l 258 (361)
T TIGR02091 253 ANMDLV 258 (361)
T ss_pred HHHHHh
Confidence 976654
|
This enzyme, glucose-1-phosphate adenylyltransferase, is also called ADP-glucose pyrophosphorylase. The plant form is an alpha2,beta2 heterodimer, allosterically regulated in plants. Both subunits are homologous and included in this model. In bacteria, both homomeric forms of GlgC and more active heterodimers of GlgC and GlgD have been described. This model describes the GlgC subunit only. This enzyme appears in variants of glycogen synthesis pathways that use ADP-glucose, rather than UDP-glucose as in animals. |
| >PRK02862 glgC glucose-1-phosphate adenylyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.30 E-value=1.7e-10 Score=98.71 Aligned_cols=200 Identities=12% Similarity=0.044 Sum_probs=120.9
Q ss_pred CCCCceeeeeCCe-ehHHHHHHHHhcCCCcCeEEEEeCCCchHHHHHHHHh-c--C---Cc-EEEec--C----C---cc
Q 028081 3 ANMPKQYLPLLGQ-PIALYSFYTFSRMVEVKEIVVVCDPSYSDIFEETKEK-I--N---VD-LKFSL--P----G---KE 65 (214)
Q Consensus 3 ~~~~K~l~~l~gk-pli~~~i~~~~~~~~~~~iiVv~~~~~~~~~~~~~~~-~--~---~~-~~~~~--~----~---~~ 65 (214)
+.+||+|+|++|+ |||+|+++.+.+++ +++|+|++++.. +.+.+.+.. + + .. +.+.. . . .+
T Consensus 22 ~~~PK~Llpi~gk~plI~~~L~~l~~~G-i~~vivv~~~~~-~~i~~~l~~~~~~~~~~~g~~~i~~~~~~~~~~~~~lG 99 (429)
T PRK02862 22 KLRAKPAVPLAGKYRLIDIPISNCINSG-INKIYVLTQFNS-ASLNRHISQTYNFDGFSGGFVEVLAAQQTPENPSWFQG 99 (429)
T ss_pred cCCcceeeEECCeeEEeHHHHHHHHHCC-CCEEEEEecCCH-HHHHHHHhcCcCccccCCCEEEEeCCcccCCCCccccC
Confidence 4689999999999 99999999999985 999999999764 445555432 1 0 01 11111 0 0 23
Q ss_pred HHHHHHHHHhhccc-CCCeEEEEcCCCCCCCHHHHHHHHHHHHhcCC--eEEeeecc--cc----EEEecCCCceeeecC
Q 028081 66 RQDSVYSGLQEVDF-NSELVCIHDSARPLVLSKDVQKVLMDALRVGA--AVLGVPAK--AT----IKEANSESFVVRTLD 136 (214)
Q Consensus 66 ~~~sv~~al~~~~~-~~~~vl~~~~d~P~v~~~~i~~~i~~~~~~~~--~i~~~~~~--~~----~~~~~~~g~v~~~~~ 136 (214)
..++++.++..+.. ..+.++++.||. +. ..++..+++.+...++ .+.+.+.. ++ +...+++|.+..+.+
T Consensus 100 Ta~al~~a~~~l~~~~~~~~lVl~gD~-l~-~~dl~~ll~~h~~~~a~~tl~~~~~~~~~~~~yG~i~~d~~g~V~~~~E 177 (429)
T PRK02862 100 TADAVRKYLWHFQEWDVDEYLILSGDQ-LY-RMDYRLFVQHHRETGADITLAVLPVDEKDASGFGLMKTDDDGRITEFSE 177 (429)
T ss_pred cHHHHHHHHHHHHhcCCCEEEEecCCE-EE-eCCHHHHHHHHHHcCCCEEEEEEecChhhcccceEEEECCCCcEEEEEE
Confidence 46788888887752 235789999999 54 4578888887766544 23333332 11 122344455543322
Q ss_pred ccc------------------------hhhhc-CCcccChHHHHHHHHHHHhcCCCCC-cHHHHHHhCCCCeEEEecCCC
Q 028081 137 RKT------------------------LWEMQ-TPQVIKPDLLKKGFELVNREGLEVT-DDVSIVEHLKHPVYITEGSYT 190 (214)
Q Consensus 137 r~~------------------------~~~~~-~p~~f~~~~l~~~~~~~~~~~~~~~-d~~~~~~~~g~~i~~v~~~~~ 190 (214)
... .+..+ .-++|+...|..++.... ....+. +....+ ..+.++.....+..
T Consensus 178 kp~~~~~~~~~~~~s~~~~~~~~~~~~~~~~n~Giyi~~~~vl~~~l~~~~-~~~~~~~dil~~l-~~~~~v~~~~~~g~ 255 (429)
T PRK02862 178 KPKGDELKAMAVDTSRLGLSPEEAKGKPYLASMGIYVFSRDVLFDLLNKNP-EYTDFGKEIIPEA-IRDYKVQSYLFDGY 255 (429)
T ss_pred CCCccccchhcccccccccccccCCCCceEEEEEEEEEcHHHHHHHHHHCC-ChhhhHHHHHHHH-hccCcEEEEEeCCE
Confidence 110 01122 237788877765554321 001111 111122 24567777766678
Q ss_pred CcccCCHHHHHHHHHHhh
Q 028081 191 NIKVTTPDDLLIAERILN 208 (214)
Q Consensus 191 ~~~Idtp~Dl~~a~~~~~ 208 (214)
+.+|+||++|..++..+.
T Consensus 256 w~digt~~~y~~an~~l~ 273 (429)
T PRK02862 256 WEDIGTIEAFYEANLALT 273 (429)
T ss_pred EEeCCCHHHHHHHHHHHH
Confidence 999999999999986654
|
|
| >PRK00725 glgC glucose-1-phosphate adenylyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.29 E-value=3.1e-10 Score=96.98 Aligned_cols=200 Identities=15% Similarity=0.097 Sum_probs=121.1
Q ss_pred CCCceeeeeCCee-hHHHHHHHHhcCCCcCeEEEEeCCCchHHHHHHHHh-cC-------CcEEEec-------C--Ccc
Q 028081 4 NMPKQYLPLLGQP-IALYSFYTFSRMVEVKEIVVVCDPSYSDIFEETKEK-IN-------VDLKFSL-------P--GKE 65 (214)
Q Consensus 4 ~~~K~l~~l~gkp-li~~~i~~~~~~~~~~~iiVv~~~~~~~~~~~~~~~-~~-------~~~~~~~-------~--~~~ 65 (214)
.+||+|+|++|+| ||.|+++.+.+++ +++|+|++++.. +.+.+.+.+ ++ ..+.+.. . ..+
T Consensus 35 ~~PK~llpv~gkp~lI~~~l~~l~~~G-i~~i~vv~~~~~-~~i~~~~~~~~~~~~~~~~~~i~i~~~~~~~~~e~~~lG 112 (425)
T PRK00725 35 KRAKPAVYFGGKFRIIDFALSNCINSG-IRRIGVLTQYKA-HSLIRHIQRGWSFFREELGEFVDLLPAQQRVDEENWYRG 112 (425)
T ss_pred CCcceeEEECCEEEEhHHHHHHHHHCC-CCeEEEEecCCH-HHHHHHHHhhhcccccCCCCeEEEeCCcccCCCCccccC
Confidence 6899999999997 9999999999875 899999999875 444444432 21 0111111 0 022
Q ss_pred HHHHHHHHHhhcccC-CCeEEEEcCCCCCCCHHHHHHHHHHHHhcCC--eEEeeec--ccc----EEEecCCCceeeecC
Q 028081 66 RQDSVYSGLQEVDFN-SELVCIHDSARPLVLSKDVQKVLMDALRVGA--AVLGVPA--KAT----IKEANSESFVVRTLD 136 (214)
Q Consensus 66 ~~~sv~~al~~~~~~-~~~vl~~~~d~P~v~~~~i~~~i~~~~~~~~--~i~~~~~--~~~----~~~~~~~g~v~~~~~ 136 (214)
..+++++|+..+... .+.++++.||. +...++..+++.+...++ .+.+.++ .++ +...+++|.+....+
T Consensus 113 Ta~al~~a~~~l~~~~~d~~lVl~gD~--l~~~dl~~ll~~h~~~~~~~tl~~~~~~~~~~~~yG~v~~d~~~~V~~~~E 190 (425)
T PRK00725 113 TADAVYQNLDIIRRYDPKYVVILAGDH--IYKMDYSRMLADHVESGADCTVACLEVPREEASAFGVMAVDENDRITAFVE 190 (425)
T ss_pred cHHHHHHHHHHHHhcCCCEEEEecCCe--EeccCHHHHHHHHHHcCCCEEEEEEecchhhcccceEEEECCCCCEEEEEE
Confidence 367788888887532 46789999998 445678999988766544 3333333 222 222344455654432
Q ss_pred ccc----------hhhhcC-CcccChHHHHHHHHHHHh--cC-CC-CCcHHHHHHhCCCCeEEEec-----------CCC
Q 028081 137 RKT----------LWEMQT-PQVIKPDLLKKGFELVNR--EG-LE-VTDDVSIVEHLKHPVYITEG-----------SYT 190 (214)
Q Consensus 137 r~~----------~~~~~~-p~~f~~~~l~~~~~~~~~--~~-~~-~~d~~~~~~~~g~~i~~v~~-----------~~~ 190 (214)
+.. ...... -+.|+.+.|..++..... ++ .+ .+|....+...+ ++..... +..
T Consensus 191 Kp~~~~~~~~~~~~~l~n~GIYi~~~~~L~~~L~~~~~~~~~~~~~~~dii~~l~~~~-~v~~~~~~g~~~~~~~~~~gy 269 (425)
T PRK00725 191 KPANPPAMPGDPDKSLASMGIYVFNADYLYELLEEDAEDPNSSHDFGKDIIPKIVEEG-KVYAHPFSDSCVRSDPEEEPY 269 (425)
T ss_pred CCCCccccccCccceEEEeeEEEEeHHHHHHHHHHhhcCCCccchhhHHHHHHHhccC-cEEEEEecCCccccccccCCe
Confidence 210 111222 378888877665544221 11 22 344444444333 5654432 246
Q ss_pred CcccCCHHHHHHHHHHhh
Q 028081 191 NIKVTTPDDLLIAERILN 208 (214)
Q Consensus 191 ~~~Idtp~Dl~~a~~~~~ 208 (214)
|.||.+|++|..++..+.
T Consensus 270 w~digt~~~y~~an~~ll 287 (425)
T PRK00725 270 WRDVGTLDAYWQANLDLA 287 (425)
T ss_pred EEECCCHHHHHHHHHHHc
Confidence 899999999999986653
|
|
| >PLN02241 glucose-1-phosphate adenylyltransferase | Back alignment and domain information |
|---|
Probab=99.29 E-value=1.4e-10 Score=99.35 Aligned_cols=202 Identities=12% Similarity=0.022 Sum_probs=123.4
Q ss_pred CCCCceeeeeCCe-ehHHHHHHHHhcCCCcCeEEEEeCCCchHHHHHHHHh-c--CCc-------EEEec--C-------
Q 028081 3 ANMPKQYLPLLGQ-PIALYSFYTFSRMVEVKEIVVVCDPSYSDIFEETKEK-I--NVD-------LKFSL--P------- 62 (214)
Q Consensus 3 ~~~~K~l~~l~gk-pli~~~i~~~~~~~~~~~iiVv~~~~~~~~~~~~~~~-~--~~~-------~~~~~--~------- 62 (214)
..+||+|+|++|+ |||+|+++.+.+++ +++|+|++++.. +.+.+.+.. + +.. +.+.. .
T Consensus 22 ~~~PK~llpv~g~~plId~~L~~l~~~G-i~~i~iv~~~~~-~~i~~~l~~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~ 99 (436)
T PLN02241 22 KRRAKPAVPIGGNYRLIDIPMSNCINSG-INKIYVLTQFNS-ASLNRHLSRAYNFGNGGNFGDGFVEVLAATQTPGEKGW 99 (436)
T ss_pred cCCcccceEeCCcceEehHHHHHHHhCC-CCEEEEEeccCH-HHHHHHHhccCCCCCCcccCCCCEEEcCCcccCCCCcc
Confidence 4689999999997 99999999999875 999999999865 445555442 1 100 11111 1
Q ss_pred CccHHHHHHHHHhhcccC----CCeEEEEcCCCCCCCHHHHHHHHHHHHhcCCe--EEeeeccc------cEEEecCCCc
Q 028081 63 GKERQDSVYSGLQEVDFN----SELVCIHDSARPLVLSKDVQKVLMDALRVGAA--VLGVPAKA------TIKEANSESF 130 (214)
Q Consensus 63 ~~~~~~sv~~al~~~~~~----~~~vl~~~~d~P~v~~~~i~~~i~~~~~~~~~--i~~~~~~~------~~~~~~~~g~ 130 (214)
..+..++++.++..+++. .+.++++.||. + ....+.++++.+.+.++. +.+.++.. .+..++++|.
T Consensus 100 ~lGt~~al~~~~~~~~~~~~~~~~~~lv~~gD~-v-~~~dl~~ll~~h~~~~a~~ti~~~~v~~~~~~~ygvv~~d~~~~ 177 (436)
T PLN02241 100 FQGTADAVRQFLWLFEDAKNKNVEEVLILSGDH-L-YRMDYMDFVQKHRESGADITIACLPVDESRASDFGLMKIDDTGR 177 (436)
T ss_pred ccCcHHHHHHHHHHHHhcccCCCCEEEEecCCe-E-EccCHHHHHHHHHHcCCCEEEEEEecchhhcCcceEEEECCCCC
Confidence 112256677766555421 35688999998 4 345788999888765552 33333321 1222344555
Q ss_pred eeeecCc---cc---------------------hhhhcC-CcccChHHHHHHHHHHHhcC-CCCCcHHHHHHhCCCCeEE
Q 028081 131 VVRTLDR---KT---------------------LWEMQT-PQVIKPDLLKKGFELVNREG-LEVTDDVSIVEHLKHPVYI 184 (214)
Q Consensus 131 v~~~~~r---~~---------------------~~~~~~-p~~f~~~~l~~~~~~~~~~~-~~~~d~~~~~~~~g~~i~~ 184 (214)
+....+. .. .....+ -+.|+.+.|..+++...... ...+|....+...|.+++.
T Consensus 178 v~~~~Ekp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GIyi~~~~~l~~ll~~~~~~~~~~~~dil~~l~~~g~~v~~ 257 (436)
T PLN02241 178 IIEFSEKPKGDELKAMQVDTTVLGLSPEEAKEKPYIASMGIYVFKKDVLLKLLRWRFPTANDFGSEIIPGAIKEGYNVQA 257 (436)
T ss_pred EEEEEECCCCcccccccccccccccccccccccceEEEeEEEEEEHHHHHHHHHhhcccccchhHHHHHHHhhcCCeEEE
Confidence 5433221 10 011122 36778777766655432111 1223444445556778887
Q ss_pred EecCCCCcccCCHHHHHHHHHHhh
Q 028081 185 TEGSYTNIKVTTPDDLLIAERILN 208 (214)
Q Consensus 185 v~~~~~~~~Idtp~Dl~~a~~~~~ 208 (214)
...+..|.+|++|+||..++..+.
T Consensus 258 ~~~~gyw~dIg~~~~y~~a~~~~l 281 (436)
T PLN02241 258 YLFDGYWEDIGTIKSFYEANLALT 281 (436)
T ss_pred EeeCCEEEECCCHHHHHHHHHHHh
Confidence 776678999999999999987654
|
|
| >KOG1322 consensus GDP-mannose pyrophosphorylase/mannose-1-phosphate guanylyltransferase [Cell wall/membrane/envelope biogenesis] | Back alignment and domain information |
|---|
Probab=99.18 E-value=5.8e-09 Score=83.62 Aligned_cols=196 Identities=12% Similarity=0.127 Sum_probs=121.4
Q ss_pred CCCceeeeeCCeehHHHHHHHHhcCCCcCeEEEEeCCCchHHHHHHHHhcC----CcEEEec-----CCccHHHHHHHHH
Q 028081 4 NMPKQYLPLLGQPIALYSFYTFSRMVEVKEIVVVCDPSYSDIFEETKEKIN----VDLKFSL-----PGKERQDSVYSGL 74 (214)
Q Consensus 4 ~~~K~l~~l~gkpli~~~i~~~~~~~~~~~iiVv~~~~~~~~~~~~~~~~~----~~~~~~~-----~~~~~~~sv~~al 74 (214)
.+||++.+++++|||.|.++++.+++ +++|++.+..........+.+.|+ +++.... +.+++++.++.-|
T Consensus 29 t~pKPlVpfgn~pmI~hqieal~nsG-i~~I~la~~y~s~sl~~~~~k~y~~~lgVei~~s~eteplgtaGpl~laR~~L 107 (371)
T KOG1322|consen 29 TRPKPLVPFGNKPMILHQIEALINSG-ITKIVLATQYNSESLNRHLSKAYGKELGVEILASTETEPLGTAGPLALARDFL 107 (371)
T ss_pred cCCCcccccCcchhhHHHHHHHHhCC-CcEEEEEEecCcHHHHHHHHHHhhhccceEEEEEeccCCCcccchHHHHHHHh
Confidence 57999999999999999999999985 999999999876334455555554 3332222 2333455555544
Q ss_pred hhcccCCCeEEEEcCCCCCCCHHHHHHHHHHHHhcC--CeEEeeeccccEEE----ecC-CCceeeecCcc-chhh--hc
Q 028081 75 QEVDFNSELVCIHDSARPLVLSKDVQKVLMDALRVG--AAVLGVPAKATIKE----ANS-ESFVVRTLDRK-TLWE--MQ 144 (214)
Q Consensus 75 ~~~~~~~~~vl~~~~d~P~v~~~~i~~~i~~~~~~~--~~i~~~~~~~~~~~----~~~-~g~v~~~~~r~-~~~~--~~ 144 (214)
...+ ..-++++.+|.=..= .+..+++.+..++ ..+.+.++.++.++ .++ .|.+.+..+.- .+.. ++
T Consensus 108 ~~~~--~~~ffVLnsDvi~~~--p~~~~vqfH~~~gae~TI~~t~vdepSkyGvv~~d~~~grV~~F~EKPkd~vsnkin 183 (371)
T KOG1322|consen 108 WVFE--DAPFFVLNSDVICRM--PYKEMVQFHRAHGAEITIVVTKVDEPSKYGVVVIDEDTGRVIRFVEKPKDLVSNKIN 183 (371)
T ss_pred hhcC--CCcEEEecCCeeecC--CHHHHHHHHHhcCCceEEEEEeccCccccceEEEecCCCceeEehhCchhhhhcccc
Confidence 3322 114667766642221 2467888887654 46778888876332 344 56666554322 2211 11
Q ss_pred -CCcccChHHHHHHHHHHHhcCCCCCcHHHHHHhCCCCeEEEecCCCCcccCCHHHHHHHHHHhh
Q 028081 145 -TPQVIKPDLLKKGFELVNREGLEVTDDVSIVEHLKHPVYITEGSYTNIKVTTPDDLLIAERILN 208 (214)
Q Consensus 145 -~p~~f~~~~l~~~~~~~~~~~~~~~d~~~~~~~~g~~i~~v~~~~~~~~Idtp~Dl~~a~~~~~ 208 (214)
.-|.|+.+.|.+..... . .+..+..-....+.+++...-+..|.||.+|.||..+-.++-
T Consensus 184 aGiYi~~~~vL~ri~~~p--t--SiekEifP~~a~~~~l~a~~l~gfWmDIGqpkdf~~g~~~Yl 244 (371)
T KOG1322|consen 184 AGIYILNPEVLDRILLRP--T--SIEKEIFPAMAEEHQLYAFDLPGFWMDIGQPKDFLTGFSFYL 244 (371)
T ss_pred ceEEEECHHHHhHhhhcc--c--chhhhhhhhhhhcCceEEEecCchhhhcCCHHHHHHHHHHHH
Confidence 24788888777654211 1 122222222234567777777789999999999998876654
|
|
| >cd04198 eIF-2B_gamma_N The N-terminal domain of gamma subunit of the eIF-2B is a subfamily of glycosyltransferase 2 | Back alignment and domain information |
|---|
Probab=99.10 E-value=1.1e-09 Score=85.11 Aligned_cols=105 Identities=13% Similarity=0.186 Sum_probs=75.1
Q ss_pred CCCCceeeeeCCeehHHHHHHHHhcCCCcCeEEEEeCCCchHHHHHHHHhcC------CcEEEecC--CccHHHHHHHHH
Q 028081 3 ANMPKQYLPLLGQPIALYSFYTFSRMVEVKEIVVVCDPSYSDIFEETKEKIN------VDLKFSLP--GKERQDSVYSGL 74 (214)
Q Consensus 3 ~~~~K~l~~l~gkpli~~~i~~~~~~~~~~~iiVv~~~~~~~~~~~~~~~~~------~~~~~~~~--~~~~~~sv~~al 74 (214)
.+.||+|++++|+|||+|+++.+.+.+ +++|+|+++++..+.++...+.+. ..+.+... ..+..++++.+.
T Consensus 19 ~~~pK~Llpv~g~pli~~~l~~l~~~g-~~~iivv~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~gt~~al~~~~ 97 (214)
T cd04198 19 DNIPKALLPVANKPMIWYPLDWLEKAG-FEDVIVVVPEEEQAEISTYLRSFPLNLKQKLDEVTIVLDEDMGTADSLRHIR 97 (214)
T ss_pred cCCCcccCEECCeeHHHHHHHHHHHCC-CCeEEEEECHHHHHHHHHHHHhcccccCcceeEEEecCCCCcChHHHHHHHH
Confidence 358999999999999999999999874 899999998754344666555431 11222221 223477788887
Q ss_pred hhcccCCCeEEEEcCCCCCCCHHHHHHHHHHHHhcCCeE
Q 028081 75 QEVDFNSELVCIHDSARPLVLSKDVQKVLMDALRVGAAV 113 (214)
Q Consensus 75 ~~~~~~~~~vl~~~~d~P~v~~~~i~~~i~~~~~~~~~i 113 (214)
..+. .+ ++++.|| ++....+..+++.+...++.+
T Consensus 98 ~~i~--~d-~lv~~~D--~i~~~~l~~~l~~h~~~~~~~ 131 (214)
T cd04198 98 KKIK--KD-FLVLSCD--LITDLPLIELVDLHRSHDASL 131 (214)
T ss_pred hhcC--CC-EEEEeCc--cccccCHHHHHHHHhccCCcE
Confidence 7663 23 6788899 788888999999887655433
|
N-terminal domain of gamma subunit of the eukaryotic translation initiation factor 2B (eIF-2B): eIF-2B is a guanine nucleotide-exchange factor which mediates the exchange of GDP (bound to initiation factor eIF2) for GTP, generating active eIF2.GTP complex. EIF2B is a complex multimeric protein consisting of five subunits named alpha, beta, gamma, delta and epsilon. Subunit gamma shares sequence similarity with epsilon subunit, and with a family of bifunctional nucleotide-binding enzymes such as ADP-glucose pyrophosphorylase, suggesting that epsilon subunit may play roles in nucleotide binding activity. In yeast, eIF2B gamma enhances the activity of eIF2B-epsilon leading to the idea that these subunits form the catalytic subcomplex. |
| >cd02509 GDP-M1P_Guanylyltransferase GDP-M1P_Guanylyltransferase catalyzes the formation of GDP-Mannose | Back alignment and domain information |
|---|
Probab=99.09 E-value=2.3e-09 Score=86.49 Aligned_cols=102 Identities=15% Similarity=0.186 Sum_probs=73.4
Q ss_pred CCCceeeeeCC-eehHHHHHHHHhcCCCcCeEEEEeCCCchHHHHHHHHhcCCcEEEe--cCCccHHHHHHHHHhhccc-
Q 028081 4 NMPKQYLPLLG-QPIALYSFYTFSRMVEVKEIVVVCDPSYSDIFEETKEKINVDLKFS--LPGKERQDSVYSGLQEVDF- 79 (214)
Q Consensus 4 ~~~K~l~~l~g-kpli~~~i~~~~~~~~~~~iiVv~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~sv~~al~~~~~- 79 (214)
++||+|++++| +|||+|+++++...+.+++|+|+|++...+.+++.++..+..+.++ +.+.+...++..|...+..
T Consensus 21 ~~PK~ll~l~g~~~li~~~l~~l~~~~~~~~i~vvt~~~~~~~v~~~l~~~~~~~~ii~ep~~~gTa~ai~~a~~~~~~~ 100 (274)
T cd02509 21 SYPKQFLKLFGDKSLLQQTLDRLKGLVPPDRILVVTNEEYRFLVREQLPEGLPEENIILEPEGRNTAPAIALAALYLAKR 100 (274)
T ss_pred CCCceEeEcCCCCcHHHHHHHHHhcCCCCCcEEEEechHHHHHHHHHHhhcCCCceEEECCCCCCcHHHHHHHHHHHHhc
Confidence 68999999999 9999999999998755899999999764344555554322223333 2233446778777776642
Q ss_pred -CCCeEEEEcCCCCCCCHHHHHHHHHH
Q 028081 80 -NSELVCIHDSARPLVLSKDVQKVLMD 105 (214)
Q Consensus 80 -~~~~vl~~~~d~P~v~~~~i~~~i~~ 105 (214)
+.+.++++.+|.++.+.+.+.++++.
T Consensus 101 ~~~~~vlVl~~D~~i~~~~~f~~~l~~ 127 (274)
T cd02509 101 DPDAVLLVLPSDHLIEDVEAFLKAVKK 127 (274)
T ss_pred CCCCeEEEecchhcccCHHHHHHHHHH
Confidence 34689999999999887777766654
|
GDP-mannose-1-phosphate guanylyltransferase, also called GDP-mannose pyrophosphorylase (GDP-MP), catalyzes the formation of GDP-Mannose from mannose-1-phosphate and GTP. Mannose is a key monosaccharide for glycosylation of proteins and lipids. GDP-Mannose is the activated donor for mannosylation of various biomolecules. This enzyme is known to be bifunctional, as both mannose-6-phosphate isomerase and mannose-1-phosphate guanylyltransferase. This CD covers the N-terminal GDP-mannose-1-phosphate guanylyltransferase domain, whereas the isomerase function is located at the C-terminal half. GDP-MP is a member of the nucleotidyltransferase family of enzymes. |
| >TIGR01479 GMP_PMI mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase | Back alignment and domain information |
|---|
Probab=98.97 E-value=5.1e-08 Score=84.30 Aligned_cols=102 Identities=16% Similarity=0.185 Sum_probs=69.5
Q ss_pred CCCceeeeeCC-eehHHHHHHHHhcCCCcCeEEEEeCCCchHHHHHHHHhcCCc-EEEec--CCccHHHHHHHHHhhcc-
Q 028081 4 NMPKQYLPLLG-QPIALYSFYTFSRMVEVKEIVVVCDPSYSDIFEETKEKINVD-LKFSL--PGKERQDSVYSGLQEVD- 78 (214)
Q Consensus 4 ~~~K~l~~l~g-kpli~~~i~~~~~~~~~~~iiVv~~~~~~~~~~~~~~~~~~~-~~~~~--~~~~~~~sv~~al~~~~- 78 (214)
..||||+++.| +|||+|+++++...+ +++++|+++......+++.+..++.+ ..++. ...+...++..|...+.
T Consensus 21 ~~PK~~l~l~g~~~ll~~tl~~l~~~~-~~~iviv~~~~~~~~~~~~l~~~~~~~~~~i~Ep~~~gTa~ai~~aa~~~~~ 99 (468)
T TIGR01479 21 LYPKQFLALVGDLTMLQQTLKRLAGLP-CSSPLVICNEEHRFIVAEQLREIGKLASNIILEPVGRNTAPAIALAALLAAR 99 (468)
T ss_pred CCCCceeEcCCCCcHHHHHHHHHhcCC-CcCcEEecCHHHHHHHHHHHHHcCCCcceEEecccccCchHHHHHHHHHHHH
Confidence 47999999977 899999999998875 78999999866534456666666432 11221 11122344444433341
Q ss_pred --cCCCeEEEEcCCCCCCCHHHHHHHHHHH
Q 028081 79 --FNSELVCIHDSARPLVLSKDVQKVLMDA 106 (214)
Q Consensus 79 --~~~~~vl~~~~d~P~v~~~~i~~~i~~~ 106 (214)
.+.+.++++.||.|+.+++.+.++++.+
T Consensus 100 ~~~~~~~vlVl~~D~~i~~~~~f~~~l~~~ 129 (468)
T TIGR01479 100 RNGEDPLLLVLAADHVITDEDAFQAAVKLA 129 (468)
T ss_pred HHCCCcEEEEecCceeecCHHHHHHHHHHH
Confidence 1245789999999999888888888754
|
This enzyme is known to be bifunctional, as both mannose-6-phosphate isomerase (EC 5.3.1.8) (PMI) and mannose-1-phosphate guanylyltransferase (EC 2.7.7.22) in Pseudomonas aeruginosa, Xanthomonas campestris, and Gluconacetobacter xylinus. The literature on the enzyme from E. coli attributes mannose-6-phosphate isomerase activity to an adjacent gene, but the present sequence has not been shown to lack the activity. The PMI domain is C-terminal. |
| >cd04197 eIF-2B_epsilon_N The N-terminal domain of epsilon subunit of the eIF-2B is a subfamily of glycosyltransferase 2 | Back alignment and domain information |
|---|
Probab=98.79 E-value=1.1e-07 Score=74.10 Aligned_cols=99 Identities=18% Similarity=0.231 Sum_probs=65.6
Q ss_pred CCCCceeeeeCCeehHHHHHHHHhcCCCcCeEEEEeCCCchHHHHHHHHhcC--------CcEEEecCCc--cHHHHHHH
Q 028081 3 ANMPKQYLPLLGQPIALYSFYTFSRMVEVKEIVVVCDPSYSDIFEETKEKIN--------VDLKFSLPGK--ERQDSVYS 72 (214)
Q Consensus 3 ~~~~K~l~~l~gkpli~~~i~~~~~~~~~~~iiVv~~~~~~~~~~~~~~~~~--------~~~~~~~~~~--~~~~sv~~ 72 (214)
.++||+++|++|+|||.|+++.+.+++ +++|+|++++.. +.+.+.+++.. ..+.++.+.. +..+++..
T Consensus 19 ~~~pK~llpi~g~piI~~~l~~l~~~G-i~~I~iv~~~~~-~~i~~~l~~~~~~~~~~~~~~i~~~~~~~~~~~~~al~~ 96 (217)
T cd04197 19 KEKPRCLLPLANVPLIDYTLEFLALNG-VEEVFVFCCSHS-DQIKEYIEKSKWSKPKSSLMIVIIIMSEDCRSLGDALRD 96 (217)
T ss_pred cCCCceeeEECCEehHHHHHHHHHHCC-CCeEEEEeCCCH-HHHHHHHhhccccccccCcceEEEEeCCCcCccchHHHH
Confidence 468999999999999999999999975 999999999754 55666665421 1233333211 11222322
Q ss_pred --HHhhcccCCCeEEEEcCCCCCCCHHHHHHHHHHHHh
Q 028081 73 --GLQEVDFNSELVCIHDSARPLVLSKDVQKVLMDALR 108 (214)
Q Consensus 73 --al~~~~~~~~~vl~~~~d~P~v~~~~i~~~i~~~~~ 108 (214)
+...+ .+.++++.||. +....+..+++.+.+
T Consensus 97 ~~~~~~~---~~~flv~~gD~--i~~~dl~~~l~~h~~ 129 (217)
T cd04197 97 LDAKGLI---RGDFILVSGDV--VSNIDLKEILEEHKE 129 (217)
T ss_pred Hhhcccc---CCCEEEEeCCe--eeccCHHHHHHHHHH
Confidence 11112 23477889996 445678889988765
|
N-terminal domain of epsilon subunit of the eukaryotic translation initiation factor 2B (eIF-2B): eIF-2B is a guanine nucleotide-exchange factor which mediates the exchange of GDP (bound to initiation factor eIF2) for GTP, generating active eIF2.GTP complex. EIF2B is a complex multimeric protein consisting of five subunits named alpha, beta, gamma, delta and epsilon. Subunit epsilon shares sequence similarity with gamma subunit, and with a family of bifunctional nucleotide-binding enzymes such as ADP-glucose pyrophosphorylase, suggesting that epsilon subunit may play roles in nucleotide binding activity. In yeast, eIF2B gamma enhances the activity of eIF2B-epsilon leading to the idea that these subunits form the catalytic subcomplex. |
| >COG1920 Predicted nucleotidyltransferase, CobY/MobA/RfbA family [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.72 E-value=5.8e-07 Score=66.93 Aligned_cols=150 Identities=16% Similarity=0.201 Sum_probs=87.9
Q ss_pred ehHHHHHHHHhcCCCcCeEEEEeCCCchHHHHHHHHhcCCcEEEecCCccHHHHHHHHHhhcccCCCeEEEEcCCCCCCC
Q 028081 16 PIALYSFYTFSRMVEVKEIVVVCDPSYSDIFEETKEKINVDLKFSLPGKERQDSVYSGLQEVDFNSELVCIHDSARPLVL 95 (214)
Q Consensus 16 pli~~~i~~~~~~~~~~~iiVv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sv~~al~~~~~~~~~vl~~~~d~P~v~ 95 (214)
-||.+++.++... +.+|.|+++++.. ...+. ..++..+. .-..++..++..+..+ +-++++++|-|+++
T Consensus 32 aML~dvi~Al~~~--~~~i~Vvtpde~~---~~~a~----~~~vl~d~-dLN~Ai~aa~~~~~~p-~~v~vvmaDLPLl~ 100 (210)
T COG1920 32 AMLVDVLGALAGV--LGEITVVTPDEEV---LVPAT----KLEVLADP-DLNTAINAALDEIPLP-SEVIVVMADLPLLS 100 (210)
T ss_pred HHHHHHHHHhhhh--cCCceEEcCChHh---hhhcc----cceeeecc-chHHHHHHHHhhCCCC-cceEEEecccccCC
Confidence 4899999999864 6899999987642 11111 11233222 2345567777777644 56888999999999
Q ss_pred HHHHHHHHHHHHhcCCeEEeeeccccEEEecCCCceeeecCccchhhhcCCcccChHHHHHHHHHHHhcCCCCCcHHHHH
Q 028081 96 SKDVQKVLMDALRVGAAVLGVPAKATIKEANSESFVVRTLDRKTLWEMQTPQVIKPDLLKKGFELVNREGLEVTDDVSIV 175 (214)
Q Consensus 96 ~~~i~~~i~~~~~~~~~i~~~~~~~~~~~~~~~g~v~~~~~r~~~~~~~~p~~f~~~~l~~~~~~~~~~~~~~~d~~~~~ 175 (214)
++.|+++++....++.+ +.|-. .+|. ...+-|.. .|+.+ | .+..+.+.....
T Consensus 101 ~~~i~~~~~~~~d~dvv--iaP~~-------gGGT-n~L~~r~~--------~~~~~-----y-----~g~SF~~Hl~~A 152 (210)
T COG1920 101 PEHIERALSAAKDADVV--IAPGR-------GGGT-NVLFARKS--------AFRPR-----Y-----GGVSFLRHLEEA 152 (210)
T ss_pred HHHHHHHHHhcCCCcEE--EecCC-------CCce-EEEEEecc--------ccccc-----c-----cCccHHHHHHHH
Confidence 99999999876543322 23322 1221 11111111 11100 0 011122223445
Q ss_pred HhCCCCeEEEecCCCCcccCCHHHHHHHH
Q 028081 176 EHLKHPVYITEGSYTNIKVTTPDDLLIAE 204 (214)
Q Consensus 176 ~~~g~~i~~v~~~~~~~~Idtp~Dl~~a~ 204 (214)
++.|..+..+..-....|||||+||..+-
T Consensus 153 rk~G~~~~~~dSf~l~~DVDtpeDL~e~~ 181 (210)
T COG1920 153 RKRGLVVLTYDSFGLSADVDTPEDLVEAF 181 (210)
T ss_pred HHcCCEEEEecccceecCCCCHHHHHHHH
Confidence 56677776666656789999999998653
|
|
| >cd02507 eIF-2B_gamma_N_like The N-terminal of eIF-2B_gamma_like is predicted to have glycosyltransferase activity | Back alignment and domain information |
|---|
Probab=98.68 E-value=1.8e-07 Score=72.90 Aligned_cols=97 Identities=18% Similarity=0.212 Sum_probs=64.7
Q ss_pred CCCCceeeeeCCeehHHHHHHHHhcCCCcCeEEEEeCCCchHHHHHHHHhc------CCcEE--EecC--CccHHHHHHH
Q 028081 3 ANMPKQYLPLLGQPIALYSFYTFSRMVEVKEIVVVCDPSYSDIFEETKEKI------NVDLK--FSLP--GKERQDSVYS 72 (214)
Q Consensus 3 ~~~~K~l~~l~gkpli~~~i~~~~~~~~~~~iiVv~~~~~~~~~~~~~~~~------~~~~~--~~~~--~~~~~~sv~~ 72 (214)
.+.||++++++|+|||.|+++.+.+++ +++|+|++++........+.+.+ +..+. .... ..+...+++.
T Consensus 19 ~~~pK~llpv~g~pli~~~l~~l~~~g-i~~i~vv~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~Gta~~l~~ 97 (216)
T cd02507 19 SDIPKALLPVANVPLIDYTLEWLEKAG-VEEVFVVCCEHSQAIIEHLLKSKWSSLSSKMIVDVITSDLCESAGDALRLRD 97 (216)
T ss_pred cCCCcccceECCEEHHHHHHHHHHHCC-CCeEEEEeCCcHHHHHHHHHhcccccccCCceEEEEEccCCCCCccHHHHHH
Confidence 367999999999999999999999875 89999999987633223222222 11122 2211 2223666777
Q ss_pred HHhhcccCCCeEEEEcCCCCCCCHHHHHHHHHH
Q 028081 73 GLQEVDFNSELVCIHDSARPLVLSKDVQKVLMD 105 (214)
Q Consensus 73 al~~~~~~~~~vl~~~~d~P~v~~~~i~~~i~~ 105 (214)
+...+. .+ ++++.||. +..-.+..++++
T Consensus 98 ~~~~i~--~d-flv~~gD~--i~~~~l~~~l~~ 125 (216)
T cd02507 98 IRGLIR--SD-FLLLSCDL--VSNIPLSELLEE 125 (216)
T ss_pred HhhcCC--CC-EEEEeCCE--eecCCHHHHHHH
Confidence 776663 24 67888994 555567788854
|
N-terminal domain of eEIF-2B epsilon and gamma, subunits of eukaryotic translation initiators, is a subfamily of glycosyltranferase 2 and is predicted to have glycosyltranferase activity. eIF-2B is a guanine nucleotide-exchange factor which mediates the exchange of GDP (bound to initiation factor eIF2) for GTP, generating active eIF2.GTP complex. EIF2B is a complex multimeric protein consisting of five subunits named alpha, beta, gamma, delta and epsilon. Subunit epsilon shares sequence similarity with gamma subunit, and with a family of bifunctional nucleotide-binding enzymes such as ADP-glucose pyrophosphorylase, suggesting that epsilon subunit may play roles in nucleotide binding activity. In yeast, eIF2B gamma enhances the activity of eIF2B-epsilon leading to the idea that these subunits form the catalytic subcomplex. |
| >PF01983 CofC: Guanylyl transferase CofC like; InterPro: IPR002835 Coenzyme F 420 is a hydride carrier cofactor functioning in methanogenesis | Back alignment and domain information |
|---|
Probab=98.67 E-value=7.5e-08 Score=74.44 Aligned_cols=149 Identities=16% Similarity=0.222 Sum_probs=64.4
Q ss_pred ehHHHHHHHHhcCCCcCeEEEEeCCCchHHHHHHHH-hcCCcEEEecC-CccHHHHHHHHHhhcccCCCeEEEEcCCCCC
Q 028081 16 PIALYSFYTFSRMVEVKEIVVVCDPSYSDIFEETKE-KINVDLKFSLP-GKERQDSVYSGLQEVDFNSELVCIHDSARPL 93 (214)
Q Consensus 16 pli~~~i~~~~~~~~~~~iiVv~~~~~~~~~~~~~~-~~~~~~~~~~~-~~~~~~sv~~al~~~~~~~~~vl~~~~d~P~ 93 (214)
-|+.+++.++.. ++ |+|++.++.. .+.+. .+|.. ++.. +.+--.++..|+... ..+.++++.+|-|+
T Consensus 32 aMl~Dvl~al~~---v~-v~vVs~d~~v---~~~a~~~~g~~--vl~d~~~gLN~Al~~a~~~~--~~~~vlvl~aDLPl 100 (217)
T PF01983_consen 32 AMLRDVLAALRA---VD-VVVVSRDPEV---AALARARLGAE--VLPDPGRGLNAALNAALAAA--GDDPVLVLPADLPL 100 (217)
T ss_dssp HHHHHHHHHHHH----S-EEEEES--S----TTTTT---SSE--EEE---S-HHHHHHHHHH-H----S-EEEE-S--TT
T ss_pred HHHHHHHHHHHh---cC-eEEeccchhh---hhhhhhccCCe--EecCCCCCHHHHHHHHHhcc--CCCceEEeecCCcc
Confidence 488999999976 57 8888876542 23222 34443 3332 234455566664332 35678999999999
Q ss_pred CCHHHHHHHHHHHHhcCCeEEeeeccccEEEecCCCceeeecCccchhhhcCCcccChHHHHHHHHHHHhcCCCCCcHHH
Q 028081 94 VLSKDVQKVLMDALRVGAAVLGVPAKATIKEANSESFVVRTLDRKTLWEMQTPQVIKPDLLKKGFELVNREGLEVTDDVS 173 (214)
Q Consensus 94 v~~~~i~~~i~~~~~~~~~i~~~~~~~~~~~~~~~g~v~~~~~r~~~~~~~~p~~f~~~~l~~~~~~~~~~~~~~~d~~~ 173 (214)
++++.|+.+++.....+ +.+.|-.+ +|.- ..... |..|+.. |. +..+.....
T Consensus 101 l~~~dl~~~l~~~~~~~--vviap~r~-------gGTN--------~L~~~-~~~~~~~-----fg-----~~S~~~H~~ 152 (217)
T PF01983_consen 101 LTPEDLDALLAAAGRAD--VVIAPDRG-------GGTN--------ALLLR-PDAFPFR-----FG-----GGSFARHLR 152 (217)
T ss_dssp --HHHHHHHCT-SS--S--EEEEE-GG-------G-EE--------EEEES-CCC----------S-----SSHHHHHHH
T ss_pred CCHHHHHHHHhccCCCC--EEEeCCCC-------CCeE--------EEEec-CCCCCCC-----cC-----hhHHHHHHH
Confidence 99999999997653322 33444332 2210 00011 3223211 00 000111122
Q ss_pred HHHhCCCCeEEEecCCCCcccCCHHHHHHH
Q 028081 174 IVEHLKHPVYITEGSYTNIKVTTPDDLLIA 203 (214)
Q Consensus 174 ~~~~~g~~i~~v~~~~~~~~Idtp~Dl~~a 203 (214)
..++.|..+.++......+|||||+||..+
T Consensus 153 ~A~~~gl~~~v~~s~~l~~DVDtp~DL~el 182 (217)
T PF01983_consen 153 AARERGLSVAVVDSFRLALDVDTPEDLAEL 182 (217)
T ss_dssp HHHCTT--EEE---TTTT----SCCHHHHH
T ss_pred HHHHCCCeEEEEccCceeecCCCHHHHHHH
Confidence 344567777877777789999999999854
|
One step in the biosynthesis of coenzyme F 420 involves the coupling of 2-phospho- l-lactate (LP) to 7,8-didemethyl-8-hydroxy-5-deazaflavin, the F 420 chromophore. This condensation requires an initial activation of 2-phospho- l-lactate through a pyrophosphate linkage to GMP. MJ0887 from Methanocaldococcus jannaschii has domain similarity with other known nucleotidyl transferases and was demonstrated to catalyse the formation of lactyl-2-diphospho-5'-guanosine from LP and GTP, which is the third step in the biosynthesis of coenzyme F 420 []. ; GO: 0016779 nucleotidyltransferase activity; PDB: 2I5E_B. |
| >COG1210 GalU UDP-glucose pyrophosphorylase [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=98.58 E-value=4.8e-06 Score=65.73 Aligned_cols=196 Identities=15% Similarity=0.126 Sum_probs=118.4
Q ss_pred CCCceeeeeCCeehHHHHHHHHhcCCCcCeEEEEeCCCchHHHHHHH----------------------Hhc--CCcEEE
Q 028081 4 NMPKQYLPLLGQPIALYSFYTFSRMVEVKEIVVVCDPSYSDIFEETK----------------------EKI--NVDLKF 59 (214)
Q Consensus 4 ~~~K~l~~l~gkpli~~~i~~~~~~~~~~~iiVv~~~~~~~~~~~~~----------------------~~~--~~~~~~ 59 (214)
..||-++|+-+||+|+|+++.+.+++ +.+|++||+... ..+++.. +.. ..++.+
T Consensus 24 aiPKEMLPIvdKP~IqYiVeEa~~aG-Ie~i~iVTgr~K-~~IeDhFD~s~ELE~~L~~~~K~~~L~~v~~i~~~~~i~~ 101 (291)
T COG1210 24 AIPKEMLPIVDKPLIQYIVEEAVAAG-IEEILIVTGRGK-RAIEDHFDTSYELENTLEKRGKRELLEEVRSIPPLVTISF 101 (291)
T ss_pred cCchhhccccCchhHHHHHHHHHHcC-CCEEEEEecCCc-chHHHhCcCcHHHHHHHHHhCHHHHHHHHHhcccCceEEE
Confidence 36999999999999999999999986 999999998753 1222211 111 123455
Q ss_pred ecCCc--cHHHHHHHHHhhcccCCCeEEEEcCCCCCCC-HHHHHHHHHHHHhcCC-eEEeeecc--ccEE--Eec-----
Q 028081 60 SLPGK--ERQDSVYSGLQEVDFNSELVCIHDSARPLVL-SKDVQKVLMDALRVGA-AVLGVPAK--ATIK--EAN----- 126 (214)
Q Consensus 60 ~~~~~--~~~~sv~~al~~~~~~~~~vl~~~~d~P~v~-~~~i~~~i~~~~~~~~-~i~~~~~~--~~~~--~~~----- 126 (214)
+.+.. +-.+++.+|-.++. .+.+.++.+|.=+.+ ...+..|++.+..+++ ++.+.++. +..+ .++
T Consensus 102 vRQ~e~~GLGhAVl~A~~~vg--~EpFaVlL~Ddl~~~~~~~l~qmi~~ye~~g~svi~v~ev~~e~v~kYGvi~~g~~~ 179 (291)
T COG1210 102 VRQKEPLGLGHAVLCAKPFVG--DEPFAVLLPDDLVDSEKPCLKQMIELYEETGGSVIGVEEVPPEDVSKYGVIDPGEPV 179 (291)
T ss_pred EecCCCCcchhHHHhhhhhcC--CCceEEEeCCeeecCCchHHHHHHHHHHHhCCcEEEEEECCHHHCcccceEecCccc
Confidence 55422 34688888888876 345666667775554 6778999999988665 55555553 2111 111
Q ss_pred CCC--ceeeec-------CccchhhhcCCcccChHHHHHHHHHH--HhcC-CCCCcHHHHHHhCCCCeEEEecCCCCccc
Q 028081 127 SES--FVVRTL-------DRKTLWEMQTPQVIKPDLLKKGFELV--NREG-LEVTDDVSIVEHLKHPVYITEGSYTNIKV 194 (214)
Q Consensus 127 ~~g--~v~~~~-------~r~~~~~~~~p~~f~~~~l~~~~~~~--~~~~-~~~~d~~~~~~~~g~~i~~v~~~~~~~~I 194 (214)
..+ .+...+ .+|++.. ..-|.|.... ...++.. +..| ..+||....+.+. ..+.........+|+
T Consensus 180 ~~~~~~v~~~VEKP~~~~APSnlai-~GRYil~p~I-Fd~L~~~~~G~ggEiQLTDai~~L~~~-~~v~a~~~~GkryD~ 256 (291)
T COG1210 180 EKGVYKVKGMVEKPKPEEAPSNLAI-VGRYVLTPEI-FDILEETKPGAGGEIQLTDAIKKLLKK-EPVLAYVFEGKRYDC 256 (291)
T ss_pred cCCeEEEEEEEECCCCCCCCcceee-eeeeecCHHH-HHHHhhCCCCCCCEeeHHHHHHHHHhh-CcEEEEEecccEEcc
Confidence 112 122222 2344421 1224555443 3334442 2222 5689887655544 566655556678999
Q ss_pred CCHHHHHHHHHH
Q 028081 195 TTPDDLLIAERI 206 (214)
Q Consensus 195 dtp~Dl~~a~~~ 206 (214)
.++..|..|.--
T Consensus 257 G~k~Gyi~a~v~ 268 (291)
T COG1210 257 GSKLGYIKANVE 268 (291)
T ss_pred CCcccHHHHHHH
Confidence 999999876543
|
|
| >COG4750 LicC CTP:phosphocholine cytidylyltransferase involved in choline phosphorylation for cell surface LPS epitopes [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=98.40 E-value=1e-06 Score=65.81 Aligned_cols=82 Identities=23% Similarity=0.292 Sum_probs=62.3
Q ss_pred CCCceeeeeCCeehHHHHHHHHhcCCCcCeEEEEeCCCchHHHHHHHHhcCCcEEEecCCccH----HHHHHHHHhhccc
Q 028081 4 NMPKQYLPLLGQPIALYSFYTFSRMVEVKEIVVVCDPSYSDIFEETKEKINVDLKFSLPGKER----QDSVYSGLQEVDF 79 (214)
Q Consensus 4 ~~~K~l~~l~gkpli~~~i~~~~~~~~~~~iiVv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~sv~~al~~~~~ 79 (214)
..||.|+.+.|+|||++.++.+++.+ +++|+||+|.-. +.+.-+..+|+ +.++.++.-+ ..|+..|...+.
T Consensus 20 ~tpK~LlkV~g~plIErqI~~L~e~g-I~dI~IVvGYlk-E~FeYLkdKy~--vtLvyN~kY~~yNn~ySlyla~d~l~- 94 (231)
T COG4750 20 STPKSLLKVNGEPLIERQIEQLREAG-IDDITIVVGYLK-EQFEYLKDKYD--VTLVYNPKYREYNNIYSLYLARDFLN- 94 (231)
T ss_pred cCChHHHHhcCcccHHHHHHHHHHCC-CceEEEEeeehH-HHHHHHHHhcC--eEEEeCchHHhhhhHHHHHHHHHHhc-
Confidence 57999999999999999999999986 999999999875 44555556775 5555544432 678889988886
Q ss_pred CCCeEEEEcCCCCC
Q 028081 80 NSELVCIHDSARPL 93 (214)
Q Consensus 80 ~~~~vl~~~~d~P~ 93 (214)
..+ ++++|.=|
T Consensus 95 -ntY--iidsDnyl 105 (231)
T COG4750 95 -NTY--IIDSDNYL 105 (231)
T ss_pred -ccE--EeccchHh
Confidence 233 56787643
|
|
| >KOG1462 consensus Translation initiation factor 2B, gamma subunit (eIF-2Bgamma/GCD1) [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.27 E-value=8.4e-07 Score=72.77 Aligned_cols=103 Identities=18% Similarity=0.242 Sum_probs=67.4
Q ss_pred CCCCceeeeeCCeehHHHHHHHHhcCCCcCeEEEEeCCCchHHHHHHHHh-cCCcE-----EEec-C--CccHHHHHHHH
Q 028081 3 ANMPKQYLPLLGQPIALYSFYTFSRMVEVKEIVVVCDPSYSDIFEETKEK-INVDL-----KFSL-P--GKERQDSVYSG 73 (214)
Q Consensus 3 ~~~~K~l~~l~gkpli~~~i~~~~~~~~~~~iiVv~~~~~~~~~~~~~~~-~~~~~-----~~~~-~--~~~~~~sv~~a 73 (214)
+..||.|+|++++|||.|.+..+.+++ +.+++|++..++.+.++.++.. +..+. .+-. + .-+..++++.-
T Consensus 28 ~~~pKaLLPIgn~PMi~YpL~~L~~~g-fteiiVv~~e~e~~~i~~al~~~~~l~~~~~~v~ip~~~~~d~gtadsLr~I 106 (433)
T KOG1462|consen 28 SRLPKALLPIGNKPMILYPLNSLEQAG-FTEIIVVVNEDEKLDIESALGSNIDLKKRPDYVEIPTDDNSDFGTADSLRYI 106 (433)
T ss_pred hhcchhhcccCCcceeeeehhHHHhcC-CeEEEEEecHHHHHHHHHHHhcCCcccccccEEEeecccccccCCHHHHhhh
Confidence 467999999999999999999999986 9999999998766666665532 22211 1111 1 11224555444
Q ss_pred HhhcccCCCeEEEEcCCCCCCCHHHHHHHHHHHHhcC
Q 028081 74 LQEVDFNSELVCIHDSARPLVLSKDVQKVLMDALRVG 110 (214)
Q Consensus 74 l~~~~~~~~~vl~~~~d~P~v~~~~i~~~i~~~~~~~ 110 (214)
-..+. .+-++++.|| |++--.+..+++.++.++
T Consensus 107 y~kik--S~DflvlsCD--~Vtdv~l~~lvd~FR~~d 139 (433)
T KOG1462|consen 107 YSKIK--SEDFLVLSCD--FVTDVPLQPLVDKFRATD 139 (433)
T ss_pred hhhhc--cCCEEEEecc--cccCCCcHHHHHHHhccC
Confidence 33343 3235677787 566666667777776554
|
|
| >COG0836 {ManC} Mannose-1-phosphate guanylyltransferase [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=98.17 E-value=2.1e-05 Score=63.55 Aligned_cols=104 Identities=16% Similarity=0.236 Sum_probs=69.6
Q ss_pred CCCCceeeee-CCeehHHHHHHHHhcCCCcCeEEEEeCCCchHHHHHHHHhcCCc----EEEecCCccHHHHHHHHHhhc
Q 028081 3 ANMPKQYLPL-LGQPIALYSFYTFSRMVEVKEIVVVCDPSYSDIFEETKEKINVD----LKFSLPGKERQDSVYSGLQEV 77 (214)
Q Consensus 3 ~~~~K~l~~l-~gkpli~~~i~~~~~~~~~~~iiVv~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~sv~~al~~~ 77 (214)
+..||||++| ++++|++.|++++......++++|+|+.+....+++.+...+.. +.+-+-|.....++..|...+
T Consensus 21 ~~~PKQFl~L~~~~Sllq~T~~R~~~l~~~~~~~vVtne~~~f~v~eql~e~~~~~~~~illEP~gRnTApAIA~aa~~~ 100 (333)
T COG0836 21 KDYPKQFLKLFGDLSLLQQTVKRLAFLGDIEEPLVVTNEKYRFIVKEQLPEIDIENAAGIILEPEGRNTAPAIALAALSA 100 (333)
T ss_pred ccCCccceeeCCCCcHHHHHHHHHhhcCCccCeEEEeCHHHHHHHHHHHhhhhhccccceEeccCCCCcHHHHHHHHHHH
Confidence 3579999999 55999999999998855578999999987655555555542221 222233444455554443333
Q ss_pred -cc-CCCeEEEEcCCCCCCCHHHHHHHHHHH
Q 028081 78 -DF-NSELVCIHDSARPLVLSKDVQKVLMDA 106 (214)
Q Consensus 78 -~~-~~~~vl~~~~d~P~v~~~~i~~~i~~~ 106 (214)
.. ....++++.+|.=.-+.+.+.+.++..
T Consensus 101 ~~~~~d~~~lVlpsDH~I~d~~af~~av~~A 131 (333)
T COG0836 101 TAEGGDALVLVLPSDHVIADEEAFLNAVKKA 131 (333)
T ss_pred HHhCCCcEEEEecCcceeccHHHHHHHHHHH
Confidence 22 234789999999777877776666543
|
|
| >KOG1460 consensus GDP-mannose pyrophosphorylase [Carbohydrate transport and metabolism; Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.13 E-value=9.4e-06 Score=64.72 Aligned_cols=107 Identities=16% Similarity=0.237 Sum_probs=69.3
Q ss_pred CCCCceeeeeCCeehHHHHHHHHhcCCCcCeEEEEeCCCch---HHHHHHHHhcCCcEEEecC--CccHHHHHHHHHhhc
Q 028081 3 ANMPKQYLPLLGQPIALYSFYTFSRMVEVKEIVVVCDPSYS---DIFEETKEKINVDLKFSLP--GKERQDSVYSGLQEV 77 (214)
Q Consensus 3 ~~~~K~l~~l~gkpli~~~i~~~~~~~~~~~iiVv~~~~~~---~~~~~~~~~~~~~~~~~~~--~~~~~~sv~~al~~~ 77 (214)
-+.||+|.+++|.|||.|-++++.+.+++.+|+++.-.++. +.+.+..+.+...+++..- .-+...++++--+.+
T Consensus 23 f~vPKPLfpiaG~pmI~Hhi~ac~qi~~l~eI~LvGFy~e~~f~~fis~~~~e~~~pvrYL~E~~plGtaGgLyhFrdqI 102 (407)
T KOG1460|consen 23 FNVPKPLFPIAGVPMIHHHISACKQISGLAEILLVGFYEERVFTDFISAIQQEFKVPVRYLREDNPLGTAGGLYHFRDQI 102 (407)
T ss_pred cCCCCCccccCCcchhhhhHHHHhcccchhheeEEecccchHHHHHHHHHHhhcccchhhhccCCCCCcccceeehhhHH
Confidence 36899999999999999999999999999999999877752 1233333445544444321 111133355544433
Q ss_pred -ccCCCeEEEEcCCCCCCCHHHHHHHHHHHHhcCC
Q 028081 78 -DFNSELVCIHDSARPLVLSKDVQKVLMDALRVGA 111 (214)
Q Consensus 78 -~~~~~~vl~~~~d~P~v~~~~i~~~i~~~~~~~~ 111 (214)
+.+.+.|+++.||--.-=| +..|+++++.+++
T Consensus 103 l~g~ps~vFvlnaDVCcsfP--l~~ml~ahr~~g~ 135 (407)
T KOG1460|consen 103 LAGSPSAVFVLNADVCCSFP--LQDMLEAHRRYGG 135 (407)
T ss_pred hcCCCceEEEEecceecCCc--HHHHHHHHhhcCC
Confidence 3345677777776543222 5788888877665
|
|
| >PRK15460 cpsB mannose-1-phosphate guanyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.06 E-value=3.6e-05 Score=66.59 Aligned_cols=101 Identities=14% Similarity=0.235 Sum_probs=65.1
Q ss_pred CCCceeeeeCC-eehHHHHHHHHhcCCCcCeEEEEeCCCchHHHHHHHHhcC---CcEEEecCCccHHHHHHHHHhhcc-
Q 028081 4 NMPKQYLPLLG-QPIALYSFYTFSRMVEVKEIVVVCDPSYSDIFEETKEKIN---VDLKFSLPGKERQDSVYSGLQEVD- 78 (214)
Q Consensus 4 ~~~K~l~~l~g-kpli~~~i~~~~~~~~~~~iiVv~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~sv~~al~~~~- 78 (214)
..||||+++.| +|||+++++++.... +.+.+|+|+....+.+++.+...+ .++.+-+.+.....++..|...+.
T Consensus 26 ~~PKq~l~l~~~~sllq~t~~r~~~~~-~~~~iivt~~~~~~~v~~ql~~~~~~~~~ii~EP~~rnTApaialaa~~~~~ 104 (478)
T PRK15460 26 LYPKQFLCLKGDLTMLQTTICRLNGVE-CESPVVICNEQHRFIVAEQLRQLNKLTENIILEPAGRNTAPAIALAALAAKR 104 (478)
T ss_pred CCCcceeECCCCCCHHHHHHHHHHhCC-CCCcEEEeCHHHHHHHHHHHHhcCCccccEEecCCCCChHHHHHHHHHHHHH
Confidence 36999999955 799999999998764 566667788766555665555543 123222333344555544433332
Q ss_pred c--C-CCeEEEEcCCCCCCCHHHHHHHHHH
Q 028081 79 F--N-SELVCIHDSARPLVLSKDVQKVLMD 105 (214)
Q Consensus 79 ~--~-~~~vl~~~~d~P~v~~~~i~~~i~~ 105 (214)
. + ...++++.+|.-.-+.+.+.+.++.
T Consensus 105 ~~~~~~~~v~vlPaDH~I~d~~~F~~~i~~ 134 (478)
T PRK15460 105 HSPESDPLMLVLAADHVIADEDAFRAAVRN 134 (478)
T ss_pred hcCCCCCeEEEeccccccCCHHHHHHHHHH
Confidence 1 1 3578899999877777767666654
|
|
| >COG0448 GlgC ADP-glucose pyrophosphorylase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.36 E-value=0.0078 Score=50.35 Aligned_cols=198 Identities=16% Similarity=0.143 Sum_probs=122.2
Q ss_pred CCCceeeeeCCe-ehHHHHHHHHhcCCCcCeEEEEeCCCchHHHHHHHH-hcCC-------cEEEec-----CCc----c
Q 028081 4 NMPKQYLPLLGQ-PIALYSFYTFSRMVEVKEIVVVCDPSYSDIFEETKE-KINV-------DLKFSL-----PGK----E 65 (214)
Q Consensus 4 ~~~K~l~~l~gk-pli~~~i~~~~~~~~~~~iiVv~~~~~~~~~~~~~~-~~~~-------~~~~~~-----~~~----~ 65 (214)
.++|+-.|++|| -||..++..+.+++ +.+|.|.|-..... +.+.+. +... .+.+.+ ++. +
T Consensus 25 ~RakpAVpFgGkYRiIDF~LSN~vNSG-i~~I~VltQy~~~S-L~~Hi~~G~~w~l~~~~~~v~ilp~~~~~~~~~wy~G 102 (393)
T COG0448 25 DRAKPAVPFGGKYRIIDFALSNCVNSG-IRRIGVLTQYKSHS-LNDHIGRGWPWDLDRKNGGVFILPAQQREGGERWYEG 102 (393)
T ss_pred CccccccccCceeEEEeEEcccccccC-CCeEEEEeccchhH-HHHHhhCCCccccccccCcEEEeCchhccCCCcceec
Confidence 478999999997 68999999999986 99999999877532 233322 1111 122222 111 1
Q ss_pred HHHHHHHHHhhccc-CCCeEEEEcCCCCCCCHHHHHHHHHHHHhcCC--eEEeeecccc------EEEecCCCceeeecC
Q 028081 66 RQDSVYSGLQEVDF-NSELVCIHDSARPLVLSKDVQKVLMDALRVGA--AVLGVPAKAT------IKEANSESFVVRTLD 136 (214)
Q Consensus 66 ~~~sv~~al~~~~~-~~~~vl~~~~d~P~v~~~~i~~~i~~~~~~~~--~i~~~~~~~~------~~~~~~~g~v~~~~~ 136 (214)
..++++.-+..+.+ +.++|+++.||. +-.=+++.+++.+.+.++ .+.+.++... +..++++|++....+
T Consensus 103 tadai~Qnl~~i~~~~~eyvlIlsgDh--IYkmDy~~ml~~H~~~gadiTv~~~~Vp~~eas~fGim~~D~~~~i~~F~e 180 (393)
T COG0448 103 TADAIYQNLLIIRRSDPEYVLILSGDH--IYKMDYSDMLDFHIESGADVTVAVKEVPREEASRFGVMNVDENGRIIEFVE 180 (393)
T ss_pred cHHHHHHhHHHHHhcCCCEEEEecCCE--EEecCHHHHHHHHHHcCCCEEEEEEECChHhhhhcCceEECCCCCEEeeee
Confidence 35667766655542 468999999997 334567889998877655 4445555432 334566677654422
Q ss_pred ------ccchhhhcCCcccChHHHHHHHHHHHh--cCC-CCCcH-HHHHHhCCCCeEEEecCCCCcccCCHHHHHHHHHH
Q 028081 137 ------RKTLWEMQTPQVIKPDLLKKGFELVNR--EGL-EVTDD-VSIVEHLKHPVYITEGSYTNIKVTTPDDLLIAERI 206 (214)
Q Consensus 137 ------r~~~~~~~~p~~f~~~~l~~~~~~~~~--~~~-~~~d~-~~~~~~~g~~i~~v~~~~~~~~Idtp~Dl~~a~~~ 206 (214)
+++-..--.-++|+.+.|.+++....+ ++. .+..+ .-.+...|. +...+.+..|-||.|-+-|-.|+--
T Consensus 181 Kp~~~~~~~~laSMgiYIf~~~~L~~~L~~~~~~~~~~~DfgkdiIp~~~~~~~-v~AY~f~gYw~dVgTi~syy~aNmd 259 (393)
T COG0448 181 KPADGPPSNSLASMGIYIFNTDLLKELLEEDAKDPNSSHDFGKDIIPKLLERGK-VYAYEFSGYWRDVGTIDSYYEANMD 259 (393)
T ss_pred ccCcCCcccceeeeeeEEEcHHHHHHHHHHHhcccCccccchHHHHHHHHhcCC-EEEEeccchhhhcccHHHHHHhhHH
Confidence 111001113478999999998876443 222 12222 222334444 7767777789999999988877643
|
|
| >cd02511 Beta4Glucosyltransferase UDP-glucose LOS-beta-1,4 glucosyltransferase is required for biosynthesis of lipooligosaccharide | Back alignment and domain information |
|---|
Probab=96.67 E-value=0.061 Score=41.98 Aligned_cols=91 Identities=13% Similarity=-0.038 Sum_probs=61.8
Q ss_pred eCCeehHHHHHHHHhcCCCcCeEEEEeCCCchHHHHHHHHhcCCcEEEecCCccHHHHHHHHHhhcccCCCeEEEEcCCC
Q 028081 12 LLGQPIALYSFYTFSRMVEVKEIVVVCDPSYSDIFEETKEKINVDLKFSLPGKERQDSVYSGLQEVDFNSELVCIHDSAR 91 (214)
Q Consensus 12 l~gkpli~~~i~~~~~~~~~~~iiVv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sv~~al~~~~~~~~~vl~~~~d~ 91 (214)
.++...|..+++.+... .++|+|+-+... +...++++.++.++... ...+...+.-.|+..+. .++++++|+|.
T Consensus 9 ~Ne~~~l~~~l~sl~~~--~~eiivvD~gSt-D~t~~i~~~~~~~v~~~-~~~g~~~~~n~~~~~a~--~d~vl~lDaD~ 82 (229)
T cd02511 9 KNEERNIERCLESVKWA--VDEIIVVDSGST-DRTVEIAKEYGAKVYQR-WWDGFGAQRNFALELAT--NDWVLSLDADE 82 (229)
T ss_pred CCcHHHHHHHHHHHhcc--cCEEEEEeCCCC-ccHHHHHHHcCCEEEEC-CCCChHHHHHHHHHhCC--CCEEEEEeCCc
Confidence 45667788999988753 378888765443 44566677776554333 22233444455776654 68999999998
Q ss_pred CCCCHHHHHHHHHHHHhc
Q 028081 92 PLVLSKDVQKVLMDALRV 109 (214)
Q Consensus 92 P~v~~~~i~~~i~~~~~~ 109 (214)
.++++.+..+.+.+...
T Consensus 83 -~~~~~~~~~l~~~~~~~ 99 (229)
T cd02511 83 -RLTPELADEILALLATD 99 (229)
T ss_pred -CcCHHHHHHHHHHHhCC
Confidence 67999999998877654
|
UDP-glucose: lipooligosaccharide (LOS) beta-1-4-glucosyltransferase catalyzes the addition of the first residue, glucose, of the lacto-N-neotetrase structure to HepI of the LOS inner core. LOS is the major constituent of the outer leaflet of the outer membrane of gram-positive bacteria. It consists of a short oligosaccharide chain of variable composition (alpha chain) attached to a branched inner core which is lined in turn to lipid A. Beta 1,4 glucosyltransferase is required to attach the alpha chain to the inner core. |
| >KOG1461 consensus Translation initiation factor 2B, epsilon subunit (eIF-2Bepsilon/GCD6) [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=96.62 E-value=0.018 Score=50.67 Aligned_cols=98 Identities=21% Similarity=0.316 Sum_probs=63.6
Q ss_pred CCCCceeeeeCCeehHHHHHHHHhcCCCcCeEEEEeCCCchHHHHHHHHhcC------CcEEEecCCccHHHHHHHHHhh
Q 028081 3 ANMPKQYLPLLGQPIALYSFYTFSRMVEVKEIVVVCDPSYSDIFEETKEKIN------VDLKFSLPGKERQDSVYSGLQE 76 (214)
Q Consensus 3 ~~~~K~l~~l~gkpli~~~i~~~~~~~~~~~iiVv~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~sv~~al~~ 76 (214)
..+|+.|+||.+.|||.|+++.+..++ +.+|+|.+.... ..+.+.+++.. ..+..+.+|. ..|+-.+++.
T Consensus 43 ~~~p~~LLPlaNVpmIdYtL~~L~~ag-V~eVfvfc~~~~-~qi~e~i~~sew~~~~~~~v~ti~s~~--~~S~GDamR~ 118 (673)
T KOG1461|consen 43 LEKPRVLLPLANVPMIDYTLEWLERAG-VEEVFVFCSAHA-AQIIEYIEKSEWYLPMSFIVVTICSGE--SRSVGDAMRD 118 (673)
T ss_pred cCCCceEeeecCchHHHHHHHHHHhcC-ceEEEEEecccH-HHHHHHHhhccccccccceEEEEcCCC--cCcHHHHHHH
Confidence 357999999999999999999998875 999999987443 33555555421 1233334443 3345566666
Q ss_pred ccc----CCCeEEEEcCCCCCCCHHHHHHHHHHHH
Q 028081 77 VDF----NSELVCIHDSARPLVLSKDVQKVLMDAL 107 (214)
Q Consensus 77 ~~~----~~~~vl~~~~d~P~v~~~~i~~~i~~~~ 107 (214)
+.. ..|++|+ .||. ++--.+.++++.++
T Consensus 119 id~k~litgDFiLV-sgd~--vsN~pl~~~l~eHr 150 (673)
T KOG1461|consen 119 IDEKQLITGDFILV-SGDT--VSNMPLRNVLEEHR 150 (673)
T ss_pred HHhcceeecceEEE-eCCe--eecCchHHHHHHHH
Confidence 532 2466554 4543 34456778888774
|
|
| >PF09837 DUF2064: Uncharacterized protein conserved in bacteria (DUF2064); InterPro: IPR018641 This entry contains proteins that have no known function | Back alignment and domain information |
|---|
Probab=96.58 E-value=0.029 Score=39.56 Aligned_cols=96 Identities=13% Similarity=0.123 Sum_probs=44.6
Q ss_pred HHHHHhcCCCcCeEEEEeCCCchHHHHHHHHhcCCcEEEec-CCccHHHHHHHHHhhcccCCCeEEEEcCCCCCCCHHHH
Q 028081 21 SFYTFSRMVEVKEIVVVCDPSYSDIFEETKEKINVDLKFSL-PGKERQDSVYSGLQEVDFNSELVCIHDSARPLVLSKDV 99 (214)
Q Consensus 21 ~i~~~~~~~~~~~iiVv~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~sv~~al~~~~~~~~~vl~~~~d~P~v~~~~i 99 (214)
|++++.+....+.++..+++............. .+.+.. ++.+-..-+.+|++.+...++.|+++-+|.|.++++.|
T Consensus 1 tl~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~--~~~~~~Q~g~dLG~Rm~~a~~~~~~g~~~vvliGsD~P~l~~~~l 78 (122)
T PF09837_consen 1 TLAALAQADGADVVLAYTPDGDHAAFRQLWLPS--GFSFFPQQGGDLGERMANAFQQAARGYEPVVLIGSDCPDLTPDDL 78 (122)
T ss_dssp -------TSSSEEEEEE----TTHHHHHHHH-T--TSEEEE--SSSHHHHHHHHHHHHHTT-SEEEEE-SS-TT--HHHH
T ss_pred CccccccCCCcCEEEEEcCCccHHHHhccccCC--CCEEeecCCCCHHHHHHHHHHHHHcCCCcEEEEcCCCCCCCHHHH
Confidence 456666665444444444444333332211222 233333 33444455666666553346789999999999999999
Q ss_pred HHHHHHHHhcCCeEEeeeccc
Q 028081 100 QKVLMDALRVGAAVLGVPAKA 120 (214)
Q Consensus 100 ~~~i~~~~~~~~~i~~~~~~~ 120 (214)
+.+++.++..+.+ ..|..|
T Consensus 79 ~~A~~~L~~~d~V--lgPa~D 97 (122)
T PF09837_consen 79 EQAFEALQRHDVV--LGPAED 97 (122)
T ss_dssp HHHHHHTTT-SEE--EEEBTT
T ss_pred HHHHHHhccCCEE--EeeccC
Confidence 9999988765433 345544
|
; PDB: 3CGX_A. |
| >cd06438 EpsO_like EpsO protein participates in the methanolan synthesis | Back alignment and domain information |
|---|
Probab=96.39 E-value=0.15 Score=38.03 Aligned_cols=94 Identities=11% Similarity=0.063 Sum_probs=60.6
Q ss_pred CCeehHHHHHHHHhcCCC---cCeEEEEeCCCchHHHHHHHHhcCCcEEEec--CCccHHHHHHHHHhhcc---cCCCeE
Q 028081 13 LGQPIALYSFYTFSRMVE---VKEIVVVCDPSYSDIFEETKEKINVDLKFSL--PGKERQDSVYSGLQEVD---FNSELV 84 (214)
Q Consensus 13 ~gkpli~~~i~~~~~~~~---~~~iiVv~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~sv~~al~~~~---~~~~~v 84 (214)
+....|..+++++.+... .-+|+|+.+... +...++++.++..+.... ...+...++..|+..+. ...|++
T Consensus 7 ne~~~i~~~l~sl~~~~~p~~~~eiivvdd~s~-D~t~~~~~~~~~~~~~~~~~~~~gk~~aln~g~~~a~~~~~~~d~v 85 (183)
T cd06438 7 NEEAVIGNTVRSLKAQDYPRELYRIFVVADNCT-DDTAQVARAAGATVLERHDPERRGKGYALDFGFRHLLNLADDPDAV 85 (183)
T ss_pred chHHHHHHHHHHHHhcCCCCcccEEEEEeCCCC-chHHHHHHHcCCeEEEeCCCCCCCHHHHHHHHHHHHHhcCCCCCEE
Confidence 445677888888865431 135777655543 455666666665443322 22234566666776552 247899
Q ss_pred EEEcCCCCCCCHHHHHHHHHHHHh
Q 028081 85 CIHDSARPLVLSKDVQKVLMDALR 108 (214)
Q Consensus 85 l~~~~d~P~v~~~~i~~~i~~~~~ 108 (214)
+++|+|. .++|+.+.+++..+..
T Consensus 86 ~~~DaD~-~~~p~~l~~l~~~~~~ 108 (183)
T cd06438 86 VVFDADN-LVDPNALEELNARFAA 108 (183)
T ss_pred EEEcCCC-CCChhHHHHHHHHHhh
Confidence 9999999 5579999999988764
|
The Methylobacillus sp EpsO protein is predicted to participate in the methanolan synthesis. Methanolan is an exopolysaccharide (EPS), composed of glucose, mannose and galactose. A 21 genes cluster was predicted to participate in the methanolan synthesis. Gene disruption analysis revealed that EpsO is one of the glycosyltransferase enzymes involved in the synthesis of repeating sugar units onto the lipid carrier. |
| >cd06439 CESA_like_1 CESA_like_1 is a member of the cellulose synthase (CESA) superfamily | Back alignment and domain information |
|---|
Probab=96.11 E-value=0.11 Score=40.74 Aligned_cols=98 Identities=15% Similarity=0.126 Sum_probs=60.3
Q ss_pred eeee-CCeehHHHHHHHHhcCCCc---CeEEEEeCCCchHHHHHHHHhcCC-cEEEec--CCccHHHHHHHHHhhcccCC
Q 028081 9 YLPL-LGQPIALYSFYTFSRMVEV---KEIVVVCDPSYSDIFEETKEKINV-DLKFSL--PGKERQDSVYSGLQEVDFNS 81 (214)
Q Consensus 9 l~~l-~gkpli~~~i~~~~~~~~~---~~iiVv~~~~~~~~~~~~~~~~~~-~~~~~~--~~~~~~~sv~~al~~~~~~~ 81 (214)
+.+. +....|..+++.+.+...- -+|+|+.+... +...++++.+.. .+.++. ...+...+...|++... .
T Consensus 34 vip~~n~~~~l~~~l~si~~q~~~~~~~eiivvdd~s~-d~t~~~~~~~~~~~v~~i~~~~~~g~~~a~n~gi~~a~--~ 110 (251)
T cd06439 34 IIPAYNEEAVIEAKLENLLALDYPRDRLEIIVVSDGST-DGTAEIAREYADKGVKLLRFPERRGKAAALNRALALAT--G 110 (251)
T ss_pred EEecCCcHHHHHHHHHHHHhCcCCCCcEEEEEEECCCC-ccHHHHHHHHhhCcEEEEEcCCCCChHHHHHHHHHHcC--C
Confidence 3443 4455778888887653322 26777765443 334455554432 233332 22334566667777765 5
Q ss_pred CeEEEEcCCCCCCCHHHHHHHHHHHHhcC
Q 028081 82 ELVCIHDSARPLVLSKDVQKVLMDALRVG 110 (214)
Q Consensus 82 ~~vl~~~~d~P~v~~~~i~~~i~~~~~~~ 110 (214)
|+++++|+|.-+ +++.+.++++.+...+
T Consensus 111 d~i~~lD~D~~~-~~~~l~~l~~~~~~~~ 138 (251)
T cd06439 111 EIVVFTDANALL-DPDALRLLVRHFADPS 138 (251)
T ss_pred CEEEEEccccCc-CHHHHHHHHHHhcCCC
Confidence 999999999955 6999999999885433
|
This is a subfamily of cellulose synthase (CESA) superfamily. CESA superfamily includes a wide variety of glycosyltransferase family 2 enzymes that share the common characteristic of catalyzing the elongation of polysaccharide chains. The members of the superfamily include cellulose synthase catalytic subunit, chitin synthase, glucan biosynthesis protein and other families of CESA-like proteins. |
| >cd04180 UGPase_euk_like Eukaryotic UGPase-like includes UDPase and UDPGlcNAc pyrophosphorylase enzymes | Back alignment and domain information |
|---|
Probab=96.01 E-value=0.016 Score=46.65 Aligned_cols=94 Identities=17% Similarity=0.101 Sum_probs=58.6
Q ss_pred CCCCCCceeeeeC---CeehHHHHHHHHhcC-------CCcCeEEEEeCCCchHHHHHHHHhcC-C--cEE---------
Q 028081 1 MGANMPKQYLPLL---GQPIALYSFYTFSRM-------VEVKEIVVVCDPSYSDIFEETKEKIN-V--DLK--------- 58 (214)
Q Consensus 1 m~~~~~K~l~~l~---gkpli~~~i~~~~~~-------~~~~~iiVv~~~~~~~~~~~~~~~~~-~--~~~--------- 58 (214)
||...||++++++ |||+++|.++++++. ..+..+++.+++. -+.+.+.++++. . .+.
T Consensus 14 Lg~~~PK~~~~i~~~~gk~~l~~~~~~i~~~~~~~~~~~~Ip~~imts~~t-~~~t~~~l~~~~~~~~~v~~f~Q~~~P~ 92 (266)
T cd04180 14 LGKDGPKSSTDVGLPSGQCFLQLIGEKILTLQEIDLYSCKIPEQLMNSKYT-HEKTQCYFEKINQKNSYVITFMQGKLPL 92 (266)
T ss_pred cCCCCCceeeeecCCCCCcHHHHHHHHHHHHHHHhhcCCCCCEEEEcCchh-HHHHHHHHHHcCCCCCceEEEEeCCceE
Confidence 5777899999999 999999999999763 1244455544433 355666666543 1 111
Q ss_pred ----------------EecCCccHHHHHHHHHh------hc-ccCCCeEEEEcCCCCCCCHHH
Q 028081 59 ----------------FSLPGKERQDSVYSGLQ------EV-DFNSELVCIHDSARPLVLSKD 98 (214)
Q Consensus 59 ----------------~~~~~~~~~~sv~~al~------~~-~~~~~~vl~~~~d~P~v~~~~ 98 (214)
+.+.| .+.++.+|. .+ +....++.+.+.|.++....+
T Consensus 93 ~~~~~~~~~~~~~~~~~~P~G---nGdi~~~L~~sglLd~l~~~G~~yi~v~~vDN~la~v~D 152 (266)
T cd04180 93 KNDDDARDPHNKTKCHLFPCG---HGDVVLALIHSGHLNKLLEKGYRYIHFIGVDNLLVKVAD 152 (266)
T ss_pred EeCCCCcccCCCCceeeccCC---cHHHHHHHHHCChHHHHHHcCCEEEEEEccCccCccccC
Confidence 11112 233444443 22 224689999999999987633
|
This family includes UDP-Glucose Pyrophosphorylase (UDPase) and UDPGlcNAc pyrophosphorylase enzymes. The two enzymes share significant sequence and structure similarity. UDP-Glucose Pyrophosphorylase catalyzes a reversible production of UDP-Glucose and pyrophosphate (PPi) from Glucose-1-phosphate and UTP. UDP-glucose plays pivotal roles in galactose utilization, in glycogen synthesis, and in the synthesis of the carbohydrate moieties of glycolipids , glycoproteins , and proteoglycans . UDP-N-acetylglucosamine (UDPGlcNAc) pyrophosphorylase (UAP) (also named GlcNAc1P uridyltransferase), catalyzes the reversible conversion of UTP and GlcNAc1P from PPi and UDPGlcNAc, which is a key precursor of N- and O-linked glycosylations and is essential for the synthesis of chitin (a major component of the fungal cell wall) and of the glycosylphosphatidylinositol (GPI) linker anchoring a variety o |
| >cd06421 CESA_CelA_like CESA_CelA_like are involved in the elongation of the glucan chain of cellulose | Back alignment and domain information |
|---|
Probab=96.01 E-value=0.2 Score=38.69 Aligned_cols=96 Identities=11% Similarity=0.133 Sum_probs=61.2
Q ss_pred eeeeCCe--ehHHHHHHHHhcCCCcC---eEEEEeCCCchHHHHHHHHhcCC----cEEEec-CCccHHHHHHHHHhhcc
Q 028081 9 YLPLLGQ--PIALYSFYTFSRMVEVK---EIVVVCDPSYSDIFEETKEKINV----DLKFSL-PGKERQDSVYSGLQEVD 78 (214)
Q Consensus 9 l~~l~gk--pli~~~i~~~~~~~~~~---~iiVv~~~~~~~~~~~~~~~~~~----~~~~~~-~~~~~~~sv~~al~~~~ 78 (214)
+.+.-+. .+|..+++.+.....-+ +|+||-+... +...+++..+.. .+.... +.......+-.|++...
T Consensus 6 iip~~n~~~~~l~~~l~sl~~q~~~~~~~eiivvdd~s~-d~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~a~ 84 (234)
T cd06421 6 FIPTYNEPLEIVRKTLRAALAIDYPHDKLRVYVLDDGRR-PELRALAAELGVEYGYRYLTRPDNRHAKAGNLNNALAHTT 84 (234)
T ss_pred EEecCCCcHHHHHHHHHHHHhcCCCcccEEEEEEcCCCc-hhHHHHHHHhhcccCceEEEeCCCCCCcHHHHHHHHHhCC
Confidence 3444443 37888999998754334 6777765543 455566665543 222222 11122444566777654
Q ss_pred cCCCeEEEEcCCCCCCCHHHHHHHHHHHHh
Q 028081 79 FNSELVCIHDSARPLVLSKDVQKVLMDALR 108 (214)
Q Consensus 79 ~~~~~vl~~~~d~P~v~~~~i~~~i~~~~~ 108 (214)
.++++++|+|. .++++.+.++++.+..
T Consensus 85 --~d~i~~lD~D~-~~~~~~l~~l~~~~~~ 111 (234)
T cd06421 85 --GDFVAILDADH-VPTPDFLRRTLGYFLD 111 (234)
T ss_pred --CCEEEEEcccc-CcCccHHHHHHHHHhc
Confidence 79999999998 6689999999998865
|
Family of proteins related to Agrobacterium tumefaciens CelA and Gluconacetobacter xylinus BscA. These proteins are involved in the elongation of the glucan chain of cellulose, an aggregate of unbranched polymers of beta-1,4-linked glucose residues. They are putative catalytic subunit of cellulose synthase, which is a glycosyltransferase using UDP-glucose as the substrate. The catalytic subunit is an integral membrane protein with 6 transmembrane segments and it is postulated that the protein is anchored in the membrane at the N-terminal end. |
| >cd00761 Glyco_tranf_GTA_type Glycosyltransferase family A (GT-A) includes diverse families of glycosyl transferases with a common GT-A type structural fold | Back alignment and domain information |
|---|
Probab=95.94 E-value=0.24 Score=34.70 Aligned_cols=90 Identities=18% Similarity=0.129 Sum_probs=55.8
Q ss_pred CCeehHHHHHHHHhcCC-CcCeEEEEeCCCchHHHHHHHHhcC-----CcEEEecCCccHHHHHHHHHhhcccCCCeEEE
Q 028081 13 LGQPIALYSFYTFSRMV-EVKEIVVVCDPSYSDIFEETKEKIN-----VDLKFSLPGKERQDSVYSGLQEVDFNSELVCI 86 (214)
Q Consensus 13 ~gkpli~~~i~~~~~~~-~~~~iiVv~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~sv~~al~~~~~~~~~vl~ 86 (214)
+..+++.++++++.... ...+++|+.+... +...+...... ..........+...+...++.... .+++++
T Consensus 7 ~~~~~l~~~l~s~~~~~~~~~~i~i~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~--~d~v~~ 83 (156)
T cd00761 7 NEEPYLERCLESLLAQTYPNFEVIVVDDGST-DGTLEILEEYAKKDPRVIRVINEENQGLAAARNAGLKAAR--GEYILF 83 (156)
T ss_pred CcHHHHHHHHHHHHhCCccceEEEEEeCCCC-ccHHHHHHHHHhcCCCeEEEEecCCCChHHHHHHHHHHhc--CCEEEE
Confidence 45699999999998764 2467888777654 22333333221 111222233344566667777664 789999
Q ss_pred EcCCCCCCCHHHHHHHHHHH
Q 028081 87 HDSARPLVLSKDVQKVLMDA 106 (214)
Q Consensus 87 ~~~d~P~v~~~~i~~~i~~~ 106 (214)
+|+|..+ .++.+..++..+
T Consensus 84 ~d~D~~~-~~~~~~~~~~~~ 102 (156)
T cd00761 84 LDADDLL-LPDWLERLVAEL 102 (156)
T ss_pred ECCCCcc-CccHHHHHHHHH
Confidence 9999986 566677764443
|
Glycosyltransferases (GTs) are enzymes that synthesize oligosaccharides, polysaccharides, and glycoconjugates by transferring the sugar moiety from an activated nucleotide-sugar donor to an acceptor molecule, which may be a growing oligosaccharide, a lipid, or a protein. Based on the stereochemistry of the donor and acceptor molecules, GTs are classified as either retaining or inverting enzymes. To date, all GT structures adopt one of two possible folds, termed GT-A fold and GT-B fold. This hierarchy includes diverse families of glycosyl transferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. The majority of the proteins in this superfamily are Glycosyltransferase family 2 (GT-2) proteins. But it als |
| >cd04195 GT2_AmsE_like GT2_AmsE_like is involved in exopolysaccharide amylovora biosynthesis | Back alignment and domain information |
|---|
Probab=95.93 E-value=0.38 Score=36.20 Aligned_cols=90 Identities=17% Similarity=0.175 Sum_probs=56.3
Q ss_pred hHHHHHHHHhcCCC-cCeEEEEeCCCchHHHHHHHHhcC--CcEEEe--cCCccHHHHHHHHHhhcccCCCeEEEEcCCC
Q 028081 17 IALYSFYTFSRMVE-VKEIVVVCDPSYSDIFEETKEKIN--VDLKFS--LPGKERQDSVYSGLQEVDFNSELVCIHDSAR 91 (214)
Q Consensus 17 li~~~i~~~~~~~~-~~~iiVv~~~~~~~~~~~~~~~~~--~~~~~~--~~~~~~~~sv~~al~~~~~~~~~vl~~~~d~ 91 (214)
.|..+++.+.+... -.+|+|+-+....+...+++..+. .++.++ ....+...+.-.|+.... .++++++|+|.
T Consensus 14 ~l~~~l~Sl~~q~~~~~eiiivdd~ss~d~t~~~~~~~~~~~~i~~i~~~~n~G~~~a~N~g~~~a~--gd~i~~lD~Dd 91 (201)
T cd04195 14 FLREALESILKQTLPPDEVVLVKDGPVTQSLNEVLEEFKRKLPLKVVPLEKNRGLGKALNEGLKHCT--YDWVARMDTDD 91 (201)
T ss_pred HHHHHHHHHHhcCCCCcEEEEEECCCCchhHHHHHHHHHhcCCeEEEEcCccccHHHHHHHHHHhcC--CCEEEEeCCcc
Confidence 78899999876432 256766655432233333333221 123333 222344555666776654 78999999998
Q ss_pred CCCCHHHHHHHHHHHHhc
Q 028081 92 PLVLSKDVQKVLMDALRV 109 (214)
Q Consensus 92 P~v~~~~i~~~i~~~~~~ 109 (214)
...++.++.+++.+...
T Consensus 92 -~~~~~~l~~~~~~~~~~ 108 (201)
T cd04195 92 -ISLPDRFEKQLDFIEKN 108 (201)
T ss_pred -ccCcHHHHHHHHHHHhC
Confidence 77899999999988654
|
AmsE is a glycosyltransferase involved in exopolysaccharide amylovora biosynthesis in Erwinia amylovora. Amylovara is one of the three exopolysaccharide produced by E. amylovora. Amylovara-deficient mutants are non-pathogenic. It is a subfamily of Glycosyltransferase Family GT2, which includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. |
| >cd06434 GT2_HAS Hyaluronan synthases catalyze polymerization of hyaluronan | Back alignment and domain information |
|---|
Probab=95.87 E-value=0.15 Score=39.43 Aligned_cols=91 Identities=15% Similarity=0.182 Sum_probs=59.0
Q ss_pred eCCe-ehHHHHHHHHhcCCCcCeEEEEeCCCchHHHHHHH---HhcCCcEEEe-cCCccHHHHHHHHHhhcccCCCeEEE
Q 028081 12 LLGQ-PIALYSFYTFSRMVEVKEIVVVCDPSYSDIFEETK---EKINVDLKFS-LPGKERQDSVYSGLQEVDFNSELVCI 86 (214)
Q Consensus 12 l~gk-pli~~~i~~~~~~~~~~~iiVv~~~~~~~~~~~~~---~~~~~~~~~~-~~~~~~~~sv~~al~~~~~~~~~vl~ 86 (214)
.+.. +.|..+++.+.+.. -.+|+||.+... +...+.+ .... .+.+. ....+...++-.|+.... .|++++
T Consensus 9 ~ne~~~~l~~~l~sl~~q~-~~eiivvdd~s~-d~~~~~l~~~~~~~-~~~v~~~~~~g~~~a~n~g~~~a~--~d~v~~ 83 (235)
T cd06434 9 YDEDPDVFRECLRSILRQK-PLEIIVVTDGDD-EPYLSILSQTVKYG-GIFVITVPHPGKRRALAEGIRHVT--TDIVVL 83 (235)
T ss_pred cCCChHHHHHHHHHHHhCC-CCEEEEEeCCCC-hHHHHHHHhhccCC-cEEEEecCCCChHHHHHHHHHHhC--CCEEEE
Confidence 3555 78999999998754 357777766554 3333332 1221 22222 222334566667777664 799999
Q ss_pred EcCCCCCCCHHHHHHHHHHHHh
Q 028081 87 HDSARPLVLSKDVQKVLMDALR 108 (214)
Q Consensus 87 ~~~d~P~v~~~~i~~~i~~~~~ 108 (214)
+|+|. .++++.++++++.+..
T Consensus 84 lD~D~-~~~~~~l~~l~~~~~~ 104 (235)
T cd06434 84 LDSDT-VWPPNALPEMLKPFED 104 (235)
T ss_pred ECCCc-eeChhHHHHHHHhccC
Confidence 99999 6788899999988863
|
Hyaluronan synthases (HASs) are bi-functional glycosyltransferases that catalyze polymerization of hyaluronan. HASs transfer both GlcUA and GlcNAc in beta-(1,3) and beta-(1,4) linkages, respectively to the hyaluronan chain using UDP-GlcNAc and UDP-GlcUA as substrates. HA is made as a free glycan, not attached to a protein or lipid. HASs do not need a primer for HA synthesis; they initiate HA biosynthesis de novo with only UDP-GlcNAc, UDP-GlcUA, and Mg2+. Hyaluronan (HA) is a linear heteropolysaccharide composed of (1-3)-linked beta-D-GlcUA-beta-D-GlcNAc disaccharide repeats. It can be found in vertebrates and a few microbes and is typically on the cell surface or in the extracellular space, but is also found inside mammalian cells. Hyaluronan has several physiochemical and biological functions such as space filling, lubrication, and providing a hydrated matrix through which cells can migrate. |
| >PF00535 Glycos_transf_2: Glycosyl transferase family 2; InterPro: IPR001173 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases | Back alignment and domain information |
|---|
Probab=95.73 E-value=0.063 Score=38.65 Aligned_cols=95 Identities=14% Similarity=0.112 Sum_probs=59.9
Q ss_pred CCeehHHHHHHHHhcC-CCcCeEEEEeCCCchHHHHHHHHhc---CCcEEEecC--CccHHHHHHHHHhhcccCCCeEEE
Q 028081 13 LGQPIALYSFYTFSRM-VEVKEIVVVCDPSYSDIFEETKEKI---NVDLKFSLP--GKERQDSVYSGLQEVDFNSELVCI 86 (214)
Q Consensus 13 ~gkpli~~~i~~~~~~-~~~~~iiVv~~~~~~~~~~~~~~~~---~~~~~~~~~--~~~~~~sv~~al~~~~~~~~~vl~ 86 (214)
++...|..+++.+++. ....+|+|+-+... +...++++.+ ...+.++.. ..+...+...|++... .+++++
T Consensus 8 n~~~~l~~~l~sl~~q~~~~~eiivvdd~s~-d~~~~~~~~~~~~~~~i~~i~~~~n~g~~~~~n~~~~~a~--~~~i~~ 84 (169)
T PF00535_consen 8 NEAEYLERTLESLLKQTDPDFEIIVVDDGST-DETEEILEEYAESDPNIRYIRNPENLGFSAARNRGIKHAK--GEYILF 84 (169)
T ss_dssp S-TTTHHHHHHHHHHHSGCEEEEEEEECS-S-SSHHHHHHHHHCCSTTEEEEEHCCCSHHHHHHHHHHHH----SSEEEE
T ss_pred CCHHHHHHHHHHHhhccCCCEEEEEeccccc-cccccccccccccccccccccccccccccccccccccccc--eeEEEE
Confidence 4447788899988765 23467888766552 2233444443 345555432 2245666777888775 579999
Q ss_pred EcCCCCCCCHHHHHHHHHHHHhcCC
Q 028081 87 HDSARPLVLSKDVQKVLMDALRVGA 111 (214)
Q Consensus 87 ~~~d~P~v~~~~i~~~i~~~~~~~~ 111 (214)
+|+|. .++++.+..+++.+.+.+.
T Consensus 85 ld~D~-~~~~~~l~~l~~~~~~~~~ 108 (169)
T PF00535_consen 85 LDDDD-IISPDWLEELVEALEKNPP 108 (169)
T ss_dssp EETTE-EE-TTHHHHHHHHHHHCTT
T ss_pred eCCCc-eEcHHHHHHHHHHHHhCCC
Confidence 99998 6667799999998887544
|
These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. This domain is found in a diverse family of glycosyl transferases that transfer the sugar from UDP-glucose, UDP-N-acetyl-galactosamine, GDP-mannose or CDP-abequose, to a range of substrates including cellulose, dolichol phosphate and teichoic acids.; PDB: 2Z87_A 2Z86_B 2D7R_A 2D7I_A 3CKN_A 3CKQ_A 3CKJ_A 3CKV_A 3CKO_A 2FFU_A .... |
| >cd06435 CESA_NdvC_like NdvC_like proteins in this family are putative bacterial beta-(1,6)-glucosyltransferase | Back alignment and domain information |
|---|
Probab=95.47 E-value=0.45 Score=36.85 Aligned_cols=93 Identities=9% Similarity=0.088 Sum_probs=59.1
Q ss_pred hHHHHHHHHhcCCC-cCeEEEEeCCCch----HHHHHHHHhcCCcEEEecCC--cc-HHHHHHHHHhhcccCCCeEEEEc
Q 028081 17 IALYSFYTFSRMVE-VKEIVVVCDPSYS----DIFEETKEKINVDLKFSLPG--KE-RQDSVYSGLQEVDFNSELVCIHD 88 (214)
Q Consensus 17 li~~~i~~~~~~~~-~~~iiVv~~~~~~----~~~~~~~~~~~~~~~~~~~~--~~-~~~sv~~al~~~~~~~~~vl~~~ 88 (214)
+|..+++.+..... --+|+||-+...- ..++++++.++.++.++... .+ ...++-.|++.+...+|+++++|
T Consensus 13 ~l~~~l~sl~~q~~~~~eiiVvdd~s~D~t~~~~i~~~~~~~~~~i~~i~~~~~~G~~~~a~n~g~~~a~~~~d~i~~lD 92 (236)
T cd06435 13 MVKETLDSLAALDYPNFEVIVIDNNTKDEALWKPVEAHCAQLGERFRFFHVEPLPGAKAGALNYALERTAPDAEIIAVID 92 (236)
T ss_pred HHHHHHHHHHhCCCCCcEEEEEeCCCCchhHHHHHHHHHHHhCCcEEEEEcCCCCCCchHHHHHHHHhcCCCCCEEEEEc
Confidence 78899999876532 2467776654321 12345555555444443221 12 24556667776643468999999
Q ss_pred CCCCCCCHHHHHHHHHHHHhcC
Q 028081 89 SARPLVLSKDVQKVLMDALRVG 110 (214)
Q Consensus 89 ~d~P~v~~~~i~~~i~~~~~~~ 110 (214)
+|. .++++.|.+++..+...+
T Consensus 93 ~D~-~~~~~~l~~l~~~~~~~~ 113 (236)
T cd06435 93 ADY-QVEPDWLKRLVPIFDDPR 113 (236)
T ss_pred CCC-CcCHHHHHHHHHHhcCCC
Confidence 997 889999999998875433
|
NdvC_like proteins in this family are putative bacterial beta-(1,6)-glucosyltransferase. Bradyrhizobium japonicum synthesizes periplasmic cyclic beta-(1,3),beta-(1,6)-D-glucans during growth under hypoosmotic conditions. Two genes (ndvB, ndvC) are involved in the beta-(1, 3), beta-(1,6)-glucan synthesis. The ndvC mutant strain resulted in synthesis of altered cyclic beta-glucans composed almost entirely of beta-(1, 3)-glycosyl linkages. The periplasmic cyclic beta-(1,3),beta-(1,6)-D-glucans function for osmoregulation. The ndvC mutation also affects the ability of the bacteria to establish a successful symbiotic interaction with host plant. Thus, the beta-glucans may function as suppressors of a host defense response. |
| >cd04192 GT_2_like_e Subfamily of Glycosyltransferase Family GT2 of unknown function | Back alignment and domain information |
|---|
Probab=95.30 E-value=0.45 Score=36.41 Aligned_cols=94 Identities=14% Similarity=0.050 Sum_probs=55.4
Q ss_pred CCeehHHHHHHHHhcCCCc---CeEEEEeCCCchHHHHHHHH---h-cCCcEEEecC----CccHHHHHHHHHhhcccCC
Q 028081 13 LGQPIALYSFYTFSRMVEV---KEIVVVCDPSYSDIFEETKE---K-INVDLKFSLP----GKERQDSVYSGLQEVDFNS 81 (214)
Q Consensus 13 ~gkpli~~~i~~~~~~~~~---~~iiVv~~~~~~~~~~~~~~---~-~~~~~~~~~~----~~~~~~sv~~al~~~~~~~ 81 (214)
+....|..+++.+.....- -+|+|+-+... +...+.++ . .+..+..+.. ..+...++-.|+.... .
T Consensus 7 n~~~~l~~~l~sl~~q~~~~~~~eiivvdd~s~-d~t~~~~~~~~~~~~~~v~~~~~~~~~~~g~~~a~n~g~~~~~--~ 83 (229)
T cd04192 7 NEAENLPRLLQSLSALDYPKEKFEVILVDDHST-DGTVQILEFAAAKPNFQLKILNNSRVSISGKKNALTTAIKAAK--G 83 (229)
T ss_pred CcHHHHHHHHHHHHhCCCCCCceEEEEEcCCCC-cChHHHHHHHHhCCCcceEEeeccCcccchhHHHHHHHHHHhc--C
Confidence 4556788889888654322 25666644322 22222222 1 1223433322 2233445556666554 7
Q ss_pred CeEEEEcCCCCCCCHHHHHHHHHHHHhcC
Q 028081 82 ELVCIHDSARPLVLSKDVQKVLMDALRVG 110 (214)
Q Consensus 82 ~~vl~~~~d~P~v~~~~i~~~i~~~~~~~ 110 (214)
|+++++|+|. .+.++.++++++.+...+
T Consensus 84 d~i~~~D~D~-~~~~~~l~~l~~~~~~~~ 111 (229)
T cd04192 84 DWIVTTDADC-VVPSNWLLTFVAFIQKEQ 111 (229)
T ss_pred CEEEEECCCc-ccCHHHHHHHHHHhhcCC
Confidence 8999999999 778999999998776543
|
GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families. |
| >PRK13915 putative glucosyl-3-phosphoglycerate synthase; Provisional | Back alignment and domain information |
|---|
Probab=95.22 E-value=0.4 Score=39.38 Aligned_cols=92 Identities=14% Similarity=0.097 Sum_probs=59.5
Q ss_pred CCeehHHHHHHHHhcC---CCcCeEEEEeCCCchHHHHHHHHhcCCcEE----E---ecCCccHHHHHHHHHhhcccCCC
Q 028081 13 LGQPIALYSFYTFSRM---VEVKEIVVVCDPSYSDIFEETKEKINVDLK----F---SLPGKERQDSVYSGLQEVDFNSE 82 (214)
Q Consensus 13 ~gkpli~~~i~~~~~~---~~~~~iiVv~~~~~~~~~~~~~~~~~~~~~----~---~~~~~~~~~sv~~al~~~~~~~~ 82 (214)
+....|..+++.+.+. +...+|+|+-+... +...+.++.++..+. . .....+...++..|+.... .|
T Consensus 41 Nee~~I~~~l~sl~~~~~~~~~~EIIVVDDgSt-D~T~~ia~~~~~~v~~~~~~~~~~~~n~Gkg~A~~~g~~~a~--gd 117 (306)
T PRK13915 41 NEEETVGKVVDSIRPLLMEPLVDELIVIDSGST-DATAERAAAAGARVVSREEILPELPPRPGKGEALWRSLAATT--GD 117 (306)
T ss_pred CcHHHHHHHHHHHHHHhccCCCcEEEEEeCCCc-cHHHHHHHHhcchhhcchhhhhccccCCCHHHHHHHHHHhcC--CC
Confidence 6667788888888652 22467777654433 445556666553321 0 1111233556667776654 69
Q ss_pred eEEEEcCCCCCCCHHHHHHHHHHHH
Q 028081 83 LVCIHDSARPLVLSKDVQKVLMDAL 107 (214)
Q Consensus 83 ~vl~~~~d~P~v~~~~i~~~i~~~~ 107 (214)
+++++|+|.-..+++.+.++++.+.
T Consensus 118 ~vv~lDaD~~~~~p~~l~~l~~~l~ 142 (306)
T PRK13915 118 IVVFVDADLINFDPMFVPGLLGPLL 142 (306)
T ss_pred EEEEEeCccccCCHHHHHHHHHHHH
Confidence 9999999996678999999998775
|
|
| >cd04179 DPM_DPG-synthase_like DPM_DPG-synthase_like is a member of the Glycosyltransferase 2 superfamily | Back alignment and domain information |
|---|
Probab=95.04 E-value=0.31 Score=36.03 Aligned_cols=92 Identities=20% Similarity=0.169 Sum_probs=54.1
Q ss_pred ehHHHHHHHHhcCC---CcCeEEEEeCCCchHHHHHHHHhcCC---cEEEe--cCCccHHHHHHHHHhhcccCCCeEEEE
Q 028081 16 PIALYSFYTFSRMV---EVKEIVVVCDPSYSDIFEETKEKINV---DLKFS--LPGKERQDSVYSGLQEVDFNSELVCIH 87 (214)
Q Consensus 16 pli~~~i~~~~~~~---~~~~iiVv~~~~~~~~~~~~~~~~~~---~~~~~--~~~~~~~~sv~~al~~~~~~~~~vl~~ 87 (214)
..|..+++.+.+.. ...+|+|+-+... +...+.++.+.. .+.++ ....+...+.-.|+.... .|+++++
T Consensus 10 ~~l~~~l~sl~~~~~~~~~~eiivvd~~s~-d~~~~~~~~~~~~~~~~~~~~~~~n~G~~~a~n~g~~~a~--gd~i~~l 86 (185)
T cd04179 10 ENIPELVERLLAVLEEGYDYEIIVVDDGST-DGTAEIARELAARVPRVRVIRLSRNFGKGAAVRAGFKAAR--GDIVVTM 86 (185)
T ss_pred hhHHHHHHHHHHHhccCCCEEEEEEcCCCC-CChHHHHHHHHHhCCCeEEEEccCCCCccHHHHHHHHHhc--CCEEEEE
Confidence 45667777776552 2467777755432 223333333221 22222 222233555666776655 5899999
Q ss_pred cCCCCCCCHHHHHHHHHHHHhcCC
Q 028081 88 DSARPLVLSKDVQKVLMDALRVGA 111 (214)
Q Consensus 88 ~~d~P~v~~~~i~~~i~~~~~~~~ 111 (214)
|+|.- ++++.++++++.+...+.
T Consensus 87 D~D~~-~~~~~l~~l~~~~~~~~~ 109 (185)
T cd04179 87 DADLQ-HPPEDIPKLLEKLLEGGA 109 (185)
T ss_pred eCCCC-CCHHHHHHHHHHHhccCC
Confidence 99985 489999999987544433
|
DPM1 is the catalytic subunit of eukaryotic dolichol-phosphate mannose (DPM) synthase. DPM synthase is required for synthesis of the glycosylphosphatidylinositol (GPI) anchor, N-glycan precursor, protein O-mannose, and C-mannose. In higher eukaryotes,the enzyme has three subunits, DPM1, DPM2 and DPM3. DPM is synthesized from dolichol phosphate and GDP-Man on the cytosolic surface of the ER membrane by DPM synthase and then is flipped onto the luminal side and used as a donor substrate. In lower eukaryotes, such as Saccharomyces cerevisiae and Trypanosoma brucei, DPM synthase consists of a single component (Dpm1p and TbDpm1, respectively) that possesses one predicted transmembrane region near the C terminus for anchoring to the ER membrane. In contrast, the Dpm1 homologues of higher eukaryotes, namely fission yeast, fungi, and animals, have no transmembrane region, suggesting the ex |
| >cd06427 CESA_like_2 CESA_like_2 is a member of the cellulose synthase superfamily | Back alignment and domain information |
|---|
Probab=94.95 E-value=0.9 Score=35.50 Aligned_cols=92 Identities=10% Similarity=0.075 Sum_probs=57.4
Q ss_pred CCeehHHHHHHHHhcCCCc---CeEEEEeCCCchHHHHHHHHhcCC----cEEEecC--CccHHHHHHHHHhhcccCCCe
Q 028081 13 LGQPIALYSFYTFSRMVEV---KEIVVVCDPSYSDIFEETKEKINV----DLKFSLP--GKERQDSVYSGLQEVDFNSEL 83 (214)
Q Consensus 13 ~gkpli~~~i~~~~~~~~~---~~iiVv~~~~~~~~~~~~~~~~~~----~~~~~~~--~~~~~~sv~~al~~~~~~~~~ 83 (214)
+..-.|..+++.+.+...- =+|+||.+... +...++++.+.. .+..... ..+...++-.|++... .|+
T Consensus 11 Ne~~~l~~~l~sl~~~~y~~~~~eiivVdd~s~-d~t~~i~~~~~~~~~~~i~~~~~~~~~G~~~a~n~g~~~a~--gd~ 87 (241)
T cd06427 11 KEAEVLPQLIASLSALDYPRSKLDVKLLLEEDD-EETIAAARALRLPSIFRVVVVPPSQPRTKPKACNYALAFAR--GEY 87 (241)
T ss_pred CcHHHHHHHHHHHHhCcCCcccEEEEEEECCCC-chHHHHHHHhccCCCeeEEEecCCCCCchHHHHHHHHHhcC--CCE
Confidence 3445677888888764311 14666554433 334444444431 2333332 2234566777887654 699
Q ss_pred EEEEcCCCCCCCHHHHHHHHHHHHh
Q 028081 84 VCIHDSARPLVLSKDVQKVLMDALR 108 (214)
Q Consensus 84 vl~~~~d~P~v~~~~i~~~i~~~~~ 108 (214)
++++|+|. .+.++.+.++++.+.+
T Consensus 88 i~~~DaD~-~~~~~~l~~~~~~~~~ 111 (241)
T cd06427 88 VVIYDAED-APDPDQLKKAVAAFAR 111 (241)
T ss_pred EEEEcCCC-CCChHHHHHHHHHHHh
Confidence 99999999 6889999999998764
|
The cellulose synthase (CESA) superfamily includes a wide variety of glycosyltransferase family 2 enzymes that share the common characteristic of catalyzing the elongation of polysaccharide chains. The members include cellulose synthase catalytic subunit, chitin synthase, Glucan Biosynthesis protein and other families of CESA-like proteins. Cellulose synthase catalyzes the polymerization reaction of cellulose, an aggregate of unbranched polymers of beta-1,4-linked glucose residues in plants, most algae, some bacteria and fungi, and even some animals. In bacteria, algae and lower eukaryotes, there is a second unrelated type of cellulose synthase (Type II), which produces acylated cellulose, a derivative of cellulose. Chitin synthase catalyzes the incorporation of GlcNAc from substrate UDP-GlcNAc into chitin, which is a linear homopolymer of beta-(1,4)-linked GlcNAc residues and Glucan Biosynthesis prot |
| >cd04186 GT_2_like_c Subfamily of Glycosyltransferase Family GT2 of unknown function | Back alignment and domain information |
|---|
Probab=94.73 E-value=0.64 Score=33.40 Aligned_cols=94 Identities=13% Similarity=0.039 Sum_probs=59.8
Q ss_pred eCCeehHHHHHHHHhcCC-CcCeEEEEeCCCchHHHHHHHHhcCCcEEEecC--CccHHHHHHHHHhhcccCCCeEEEEc
Q 028081 12 LLGQPIALYSFYTFSRMV-EVKEIVVVCDPSYSDIFEETKEKINVDLKFSLP--GKERQDSVYSGLQEVDFNSELVCIHD 88 (214)
Q Consensus 12 l~gkpli~~~i~~~~~~~-~~~~iiVv~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~sv~~al~~~~~~~~~vl~~~ 88 (214)
.+...++..+++.+.+.. ...+|+|+-+... +...+.+......+.++.. ..+...+...|++.+. .++++++|
T Consensus 6 ~~~~~~l~~~l~sl~~~~~~~~~iiivdd~s~-~~~~~~~~~~~~~~~~~~~~~~~g~~~a~n~~~~~~~--~~~i~~~D 82 (166)
T cd04186 6 YNSLEYLKACLDSLLAQTYPDFEVIVVDNAST-DGSVELLRELFPEVRLIRNGENLGFGAGNNQGIREAK--GDYVLLLN 82 (166)
T ss_pred cCCHHHHHHHHHHHHhccCCCeEEEEEECCCC-chHHHHHHHhCCCeEEEecCCCcChHHHhhHHHhhCC--CCEEEEEC
Confidence 455678899999987653 1356777766443 3334444443323433322 2234555666777664 78999999
Q ss_pred CCCCCCCHHHHHHHHHHHHhc
Q 028081 89 SARPLVLSKDVQKVLMDALRV 109 (214)
Q Consensus 89 ~d~P~v~~~~i~~~i~~~~~~ 109 (214)
+|.= .+++.+..+++.+...
T Consensus 83 ~D~~-~~~~~l~~~~~~~~~~ 102 (166)
T cd04186 83 PDTV-VEPGALLELLDAAEQD 102 (166)
T ss_pred CCcE-ECccHHHHHHHHHHhC
Confidence 9984 5788899999876554
|
GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families. |
| >cd04184 GT2_RfbC_Mx_like Myxococcus xanthus RfbC like proteins are required for O-antigen biosynthesis | Back alignment and domain information |
|---|
Probab=94.63 E-value=1.2 Score=33.45 Aligned_cols=93 Identities=12% Similarity=0.051 Sum_probs=55.9
Q ss_pred eCCe-ehHHHHHHHHhcCCCc-CeEEEEeCCCchHHHHHHHHhc---CCcEEEec--CCccHHHHHHHHHhhcccCCCeE
Q 028081 12 LLGQ-PIALYSFYTFSRMVEV-KEIVVVCDPSYSDIFEETKEKI---NVDLKFSL--PGKERQDSVYSGLQEVDFNSELV 84 (214)
Q Consensus 12 l~gk-pli~~~i~~~~~~~~~-~~iiVv~~~~~~~~~~~~~~~~---~~~~~~~~--~~~~~~~sv~~al~~~~~~~~~v 84 (214)
.++. ..|..+++.+.+...- -+|+|+-+...-..+..+.+.+ ...+.+.. ...+...+.-.|++... .+++
T Consensus 10 ~n~~~~~l~~~l~sl~~q~~~~~eiivvd~gs~d~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~a~n~g~~~a~--~d~i 87 (202)
T cd04184 10 YNTPEKYLREAIESVRAQTYPNWELCIADDASTDPEVKRVLKKYAAQDPRIKVVFREENGGISAATNSALELAT--GEFV 87 (202)
T ss_pred ccCcHHHHHHHHHHHHhCcCCCeEEEEEeCCCCChHHHHHHHHHHhcCCCEEEEEcccCCCHHHHHHHHHHhhc--CCEE
Confidence 4556 7788889888764321 2666664433211223332221 12333332 22233455666777654 6899
Q ss_pred EEEcCCCCCCCHHHHHHHHHHHH
Q 028081 85 CIHDSARPLVLSKDVQKVLMDAL 107 (214)
Q Consensus 85 l~~~~d~P~v~~~~i~~~i~~~~ 107 (214)
+++|+|. .++++.++.+++.+.
T Consensus 88 ~~ld~D~-~~~~~~l~~~~~~~~ 109 (202)
T cd04184 88 ALLDHDD-ELAPHALYEVVKALN 109 (202)
T ss_pred EEECCCC-cCChHHHHHHHHHHH
Confidence 9999999 668999999999874
|
The rfbC gene encodes a predicted protein of 1,276 amino acids, which is required for O-antigen biosynthesis in Myxococcus xanthus. It is a subfamily of Glycosyltransferase Family GT2, which includes diverse families of glycosyl transferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. |
| >cd06423 CESA_like CESA_like is the cellulose synthase superfamily | Back alignment and domain information |
|---|
Probab=94.60 E-value=0.9 Score=32.51 Aligned_cols=93 Identities=13% Similarity=0.176 Sum_probs=55.1
Q ss_pred CCeehHHHHHHHHhcCCC-cCeEEEEeCCCchHHHHHHHHhcCC----cEEEe--cCCccHHHHHHHHHhhcccCCCeEE
Q 028081 13 LGQPIALYSFYTFSRMVE-VKEIVVVCDPSYSDIFEETKEKINV----DLKFS--LPGKERQDSVYSGLQEVDFNSELVC 85 (214)
Q Consensus 13 ~gkpli~~~i~~~~~~~~-~~~iiVv~~~~~~~~~~~~~~~~~~----~~~~~--~~~~~~~~sv~~al~~~~~~~~~vl 85 (214)
+....|..+++.+.+... -.+|+|+-+... +...+.+..+.. .+.+. ....+...+.-.|++... .++++
T Consensus 7 n~~~~l~~~l~sl~~q~~~~~~iivvdd~s~-d~t~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~n~~~~~~~--~~~i~ 83 (180)
T cd06423 7 NEEAVIERTIESLLALDYPKLEVIVVDDGST-DDTLEILEELAALYIRRVLVVRDKENGGKAGALNAGLRHAK--GDIVV 83 (180)
T ss_pred ChHHHHHHHHHHHHhCCCCceEEEEEeCCCc-cchHHHHHHHhccccceEEEEEecccCCchHHHHHHHHhcC--CCEEE
Confidence 444678888888876431 246777655443 223333333321 12221 222233555666777664 78999
Q ss_pred EEcCCCCCCCHHHHHHHHHHHHhc
Q 028081 86 IHDSARPLVLSKDVQKVLMDALRV 109 (214)
Q Consensus 86 ~~~~d~P~v~~~~i~~~i~~~~~~ 109 (214)
++|+|. .+.++.+..++..+...
T Consensus 84 ~~D~D~-~~~~~~l~~~~~~~~~~ 106 (180)
T cd06423 84 VLDADT-ILEPDALKRLVVPFFAD 106 (180)
T ss_pred EECCCC-CcChHHHHHHHHHhccC
Confidence 999999 66899999996655443
|
The cellulose synthase (CESA) superfamily includes a wide variety of glycosyltransferase family 2 enzymes that share the common characteristic of catalyzing the elongation of polysaccharide chains. The members include cellulose synthase catalytic subunit, chitin synthase, glucan biosynthesis protein and other families of CESA-like proteins. Cellulose synthase catalyzes the polymerization reaction of cellulose, an aggregate of unbranched polymers of beta-1,4-linked glucose residues in plants, most algae, some bacteria and fungi, and even some animals. In bacteria, algae and lower eukaryotes, there is a second unrelated type of cellulose synthase (Type II), which produces acylated cellulose, a derivative of cellulose. Chitin synthase catalyzes the incorporation of GlcNAc from substrate UDP-GlcNAc into chitin, which is a linear homopolymer of beta-(1,4)-linked GlcNAc residues and Glucan Biosynthesis protein catalyzes the |
| >PRK10073 putative glycosyl transferase; Provisional | Back alignment and domain information |
|---|
Probab=94.44 E-value=1.6 Score=36.21 Aligned_cols=95 Identities=15% Similarity=0.054 Sum_probs=58.0
Q ss_pred CCeehHHHHHHHHhcCCCc-CeEEEEeCCCchHHHHHHHHhc---CCcEEEecCC-ccHHHHHHHHHhhcccCCCeEEEE
Q 028081 13 LGQPIALYSFYTFSRMVEV-KEIVVVCDPSYSDIFEETKEKI---NVDLKFSLPG-KERQDSVYSGLQEVDFNSELVCIH 87 (214)
Q Consensus 13 ~gkpli~~~i~~~~~~~~~-~~iiVv~~~~~~~~~~~~~~~~---~~~~~~~~~~-~~~~~sv~~al~~~~~~~~~vl~~ 87 (214)
+....|..+++.+.+...- -+|+||-+... +...+++..+ ...+.+.... .+...+.-.|++... .++++++
T Consensus 16 N~~~~L~~~l~Sl~~Qt~~~~EIIiVdDgSt-D~t~~i~~~~~~~~~~i~vi~~~n~G~~~arN~gl~~a~--g~yi~fl 92 (328)
T PRK10073 16 NAGKDFRAFMESLIAQTWTALEIIIVNDGST-DNSVEIAKHYAENYPHVRLLHQANAGVSVARNTGLAVAT--GKYVAFP 92 (328)
T ss_pred CCHHHHHHHHHHHHhCCCCCeEEEEEeCCCC-ccHHHHHHHHHhhCCCEEEEECCCCChHHHHHHHHHhCC--CCEEEEE
Confidence 6678999999999764321 36676644332 2222333322 1234444322 233444455777665 6899999
Q ss_pred cCCCCCCCHHHHHHHHHHHHhcCC
Q 028081 88 DSARPLVLSKDVQKVLMDALRVGA 111 (214)
Q Consensus 88 ~~d~P~v~~~~i~~~i~~~~~~~~ 111 (214)
|+|- ++.++.+..+++.+...+.
T Consensus 93 D~DD-~~~p~~l~~l~~~~~~~~~ 115 (328)
T PRK10073 93 DADD-VVYPTMYETLMTMALEDDL 115 (328)
T ss_pred CCCC-ccChhHHHHHHHHHHhCCC
Confidence 9998 5689999999987765443
|
|
| >PRK11204 N-glycosyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=94.41 E-value=1.4 Score=37.57 Aligned_cols=93 Identities=13% Similarity=0.134 Sum_probs=59.2
Q ss_pred CCeehHHHHHHHHhcCCCc-CeEEEEeCCCc---hHHHHHHHHhcCCcEEEec--CCccHHHHHHHHHhhcccCCCeEEE
Q 028081 13 LGQPIALYSFYTFSRMVEV-KEIVVVCDPSY---SDIFEETKEKINVDLKFSL--PGKERQDSVYSGLQEVDFNSELVCI 86 (214)
Q Consensus 13 ~gkpli~~~i~~~~~~~~~-~~iiVv~~~~~---~~~~~~~~~~~~~~~~~~~--~~~~~~~sv~~al~~~~~~~~~vl~ 86 (214)
+....|..+++++.+...- -+|+|+.+... .+.+++...++. ++.++. ...+...++-.|++... .|++++
T Consensus 64 ne~~~i~~~l~sl~~q~yp~~eiiVvdD~s~d~t~~~l~~~~~~~~-~v~~i~~~~n~Gka~aln~g~~~a~--~d~i~~ 140 (420)
T PRK11204 64 NEGENVEETISHLLALRYPNYEVIAINDGSSDNTGEILDRLAAQIP-RLRVIHLAENQGKANALNTGAAAAR--SEYLVC 140 (420)
T ss_pred CCHHHHHHHHHHHHhCCCCCeEEEEEECCCCccHHHHHHHHHHhCC-cEEEEEcCCCCCHHHHHHHHHHHcC--CCEEEE
Confidence 5667889999988764322 36777655432 122223333332 344433 22334666777777654 799999
Q ss_pred EcCCCCCCCHHHHHHHHHHHHhc
Q 028081 87 HDSARPLVLSKDVQKVLMDALRV 109 (214)
Q Consensus 87 ~~~d~P~v~~~~i~~~i~~~~~~ 109 (214)
+|+|. .++++.+.++++.+++.
T Consensus 141 lDaD~-~~~~d~L~~l~~~~~~~ 162 (420)
T PRK11204 141 IDGDA-LLDPDAAAYMVEHFLHN 162 (420)
T ss_pred ECCCC-CCChhHHHHHHHHHHhC
Confidence 99999 66999999999988543
|
|
| >PRK11498 bcsA cellulose synthase catalytic subunit; Provisional | Back alignment and domain information |
|---|
Probab=94.31 E-value=1.6 Score=41.03 Aligned_cols=97 Identities=13% Similarity=0.175 Sum_probs=63.3
Q ss_pred eeeeCCee--hHHHHHHHHhcCCCc-C--eEEEEeCCCchHHHHHHHHhcCCcEEEecC-CccHHHHHHHHHhhcccCCC
Q 028081 9 YLPLLGQP--IALYSFYTFSRMVEV-K--EIVVVCDPSYSDIFEETKEKINVDLKFSLP-GKERQDSVYSGLQEVDFNSE 82 (214)
Q Consensus 9 l~~l~gkp--li~~~i~~~~~~~~~-~--~iiVv~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~sv~~al~~~~~~~~ 82 (214)
+.+.-+.+ ++..++.++.+...- + +|+|+-|... +...++++++++.+....+ .....+.+-+|++... .|
T Consensus 265 iIPtYNE~~~vv~~tI~a~l~~dYP~~k~EViVVDDgS~-D~t~~la~~~~v~yI~R~~n~~gKAGnLN~aL~~a~--GE 341 (852)
T PRK11498 265 FVPTYNEDLNVVKNTIYASLGIDWPKDKLNIWILDDGGR-EEFRQFAQEVGVKYIARPTHEHAKAGNINNALKYAK--GE 341 (852)
T ss_pred EEecCCCcHHHHHHHHHHHHhccCCCCceEEEEEeCCCC-hHHHHHHHHCCcEEEEeCCCCcchHHHHHHHHHhCC--CC
Confidence 55556666 577888887654321 2 5676654443 6677888877654322222 1123555667887764 79
Q ss_pred eEEEEcCCCCCCCHHHHHHHHHHHHhc
Q 028081 83 LVCIHDSARPLVLSKDVQKVLMDALRV 109 (214)
Q Consensus 83 ~vl~~~~d~P~v~~~~i~~~i~~~~~~ 109 (214)
+++++|+|. ..+++.+++++..+.+.
T Consensus 342 yIavlDAD~-ip~pdfL~~~V~~f~~d 367 (852)
T PRK11498 342 FVAIFDCDH-VPTRSFLQMTMGWFLKD 367 (852)
T ss_pred EEEEECCCC-CCChHHHHHHHHHHHhC
Confidence 999999999 56899999998876443
|
|
| >cd06442 DPM1_like DPM1_like represents putative enzymes similar to eukaryotic DPM1 | Back alignment and domain information |
|---|
Probab=94.29 E-value=1 Score=34.40 Aligned_cols=93 Identities=13% Similarity=0.131 Sum_probs=55.1
Q ss_pred eCCeehHHHHHHHHhcCC--CcCeEEEEeCCCc---hHHHHHHHHhcCCcEEEe--cCCccHHHHHHHHHhhcccCCCeE
Q 028081 12 LLGQPIALYSFYTFSRMV--EVKEIVVVCDPSY---SDIFEETKEKINVDLKFS--LPGKERQDSVYSGLQEVDFNSELV 84 (214)
Q Consensus 12 l~gkpli~~~i~~~~~~~--~~~~iiVv~~~~~---~~~~~~~~~~~~~~~~~~--~~~~~~~~sv~~al~~~~~~~~~v 84 (214)
.++...|..+++.+.+.. .-.+|+||-+... .+.+++...... .+.+. ....+...+.-.|++... .|++
T Consensus 6 yn~~~~l~~~l~sl~~q~~~~~~eiiiVDd~S~d~t~~~~~~~~~~~~-~i~~~~~~~n~G~~~a~n~g~~~a~--gd~i 82 (224)
T cd06442 6 YNERENIPELIERLDAALKGIDYEIIVVDDNSPDGTAEIVRELAKEYP-RVRLIVRPGKRGLGSAYIEGFKAAR--GDVI 82 (224)
T ss_pred cchhhhHHHHHHHHHHhhcCCCeEEEEEeCCCCCChHHHHHHHHHhCC-ceEEEecCCCCChHHHHHHHHHHcC--CCEE
Confidence 345566888888887543 1246777654332 112222222222 22332 222233555667887765 5899
Q ss_pred EEEcCCCCCCCHHHHHHHHHHHHh
Q 028081 85 CIHDSARPLVLSKDVQKVLMDALR 108 (214)
Q Consensus 85 l~~~~d~P~v~~~~i~~~i~~~~~ 108 (214)
+++|+|.- .+++.+..+++.+..
T Consensus 83 ~~lD~D~~-~~~~~l~~l~~~~~~ 105 (224)
T cd06442 83 VVMDADLS-HPPEYIPELLEAQLE 105 (224)
T ss_pred EEEECCCC-CCHHHHHHHHHHHhc
Confidence 99999985 589999999987543
|
Proteins similar to eukaryotic DPM1, including enzymes from bacteria and archaea; DPM1 is the catalytic subunit of eukaryotic dolichol-phosphate mannose (DPM) synthase. DPM synthase is required for synthesis of the glycosylphosphatidylinositol (GPI) anchor, N-glycan precursor, protein O-mannose, and C-mannose. In higher eukaryotes,the enzyme has three subunits, DPM1, DPM2 and DPM3. DPM is synthesized from dolichol phosphate and GDP-Man on the cytosolic surface of the ER membrane by DPM synthase and then is flipped onto the luminal side and used as a donor substrate. In lower eukaryotes, such as Saccharomyces cerevisiae and Trypanosoma brucei, DPM synthase consists of a single component (Dpm1p and TbDpm1, respectively) that possesses one predicted transmembrane region near the C terminus for anchoring to the ER membrane. In contrast, the Dpm1 homologues of higher eukaryotes, namely fission yeast, fungi, |
| >TIGR03469 HonB hopene-associated glycosyltransferase HpnB | Back alignment and domain information |
|---|
Probab=94.27 E-value=0.87 Score=38.58 Aligned_cols=96 Identities=10% Similarity=0.029 Sum_probs=59.7
Q ss_pred CCeehHHHHHHHHhcCCC--cCeEEEEeCCCchHHHHHHHH----hcC--CcEEEecCC------ccHHHHHHHHHhhcc
Q 028081 13 LGQPIALYSFYTFSRMVE--VKEIVVVCDPSYSDIFEETKE----KIN--VDLKFSLPG------KERQDSVYSGLQEVD 78 (214)
Q Consensus 13 ~gkpli~~~i~~~~~~~~--~~~iiVv~~~~~~~~~~~~~~----~~~--~~~~~~~~~------~~~~~sv~~al~~~~ 78 (214)
+..+.|..+++.+.+... --+|+||-+... |...++++ .+. ..+.++.+. .+...+...|++...
T Consensus 50 Ne~~~L~~~L~sL~~q~yp~~~eIIVVDd~St-D~T~~i~~~~~~~~~~~~~i~vi~~~~~~~g~~Gk~~A~n~g~~~A~ 128 (384)
T TIGR03469 50 NEADVIGECVTSLLEQDYPGKLHVILVDDHST-DGTADIARAAARAYGRGDRLTVVSGQPLPPGWSGKLWAVSQGIAAAR 128 (384)
T ss_pred CcHhHHHHHHHHHHhCCCCCceEEEEEeCCCC-CcHHHHHHHHHHhcCCCCcEEEecCCCCCCCCcchHHHHHHHHHHHh
Confidence 678889999999976432 136777765433 32333333 232 134444321 233445666666543
Q ss_pred c---CCCeEEEEcCCCCCCCHHHHHHHHHHHHhcC
Q 028081 79 F---NSELVCIHDSARPLVLSKDVQKVLMDALRVG 110 (214)
Q Consensus 79 ~---~~~~vl~~~~d~P~v~~~~i~~~i~~~~~~~ 110 (214)
+ +.|+++++|+|. .++++.+.++++.+.+.+
T Consensus 129 ~~~~~gd~llflDaD~-~~~p~~l~~lv~~~~~~~ 162 (384)
T TIGR03469 129 TLAPPADYLLLTDADI-AHGPDNLARLVARARAEG 162 (384)
T ss_pred ccCCCCCEEEEECCCC-CCChhHHHHHHHHHHhCC
Confidence 1 268999999999 568999999998876544
|
This family of genes include a glycosyl transferase, group 2 domain (pfam00535) which are responsible, generally for the transfer of nucleotide-diphosphate sugars to substrates such as polysaccharides and lipids. The genes of this family are often found in the same genetic locus with squalene-hopene cyclase genes, and are never associated with genes for the metabolism of phytoene. Indeed, the members of this family appear to never be found in a genome lacking squalene-hopene cyclase (SHC), although not all genomes encoding SHC have this glycosyl transferase. In the organism Zymomonas mobilis the linkage of this gene to hopanoid biosynthesis has been noted and the gene named HpnB. Hopanoids are known to feature polar glycosyl head groups in many organisms. |
| >cd06436 GlcNAc-1-P_transferase N-acetyl-glucosamine transferase is involved in the synthesis of Poly-beta-1,6-N-acetyl-D-glucosamine | Back alignment and domain information |
|---|
Probab=94.15 E-value=1.3 Score=33.36 Aligned_cols=94 Identities=11% Similarity=0.087 Sum_probs=56.6
Q ss_pred eCCeehHHHHHHHHhcCCCcCeEEEEeCCCchHHHHHHHH-hc-CCcEEEec-----CCccHHHHHHHHHhhccc-----
Q 028081 12 LLGQPIALYSFYTFSRMVEVKEIVVVCDPSYSDIFEETKE-KI-NVDLKFSL-----PGKERQDSVYSGLQEVDF----- 79 (214)
Q Consensus 12 l~gkpli~~~i~~~~~~~~~~~iiVv~~~~~~~~~~~~~~-~~-~~~~~~~~-----~~~~~~~sv~~al~~~~~----- 79 (214)
.+....|..+++++.+...-.+|+|+-+... +...++++ .. ...+.++. ...+...++-.|++.+..
T Consensus 6 ~Ne~~~l~~~l~sl~~~~~~~eIivvdd~S~-D~t~~~~~~~~~~~~v~~i~~~~~~~~~Gk~~aln~g~~~~~~~~~~~ 84 (191)
T cd06436 6 LNEEAVIQRTLASLLRNKPNFLVLVIDDASD-DDTAGIVRLAITDSRVHLLRRHLPNARTGKGDALNAAYDQIRQILIEE 84 (191)
T ss_pred cccHHHHHHHHHHHHhCCCCeEEEEEECCCC-cCHHHHHhheecCCcEEEEeccCCcCCCCHHHHHHHHHHHHhhhcccc
Confidence 4566788899999876432246777655443 33344444 11 22344332 122445666667765421
Q ss_pred ----CCCeEEEEcCCCCCCCHHHHHHHHHHHH
Q 028081 80 ----NSELVCIHDSARPLVLSKDVQKVLMDAL 107 (214)
Q Consensus 80 ----~~~~vl~~~~d~P~v~~~~i~~~i~~~~ 107 (214)
..++++++|+|.- ++++.++++...+.
T Consensus 85 g~~~~~d~v~~~DaD~~-~~~~~l~~~~~~~~ 115 (191)
T cd06436 85 GADPERVIIAVIDADGR-LDPNALEAVAPYFS 115 (191)
T ss_pred ccCCCccEEEEECCCCC-cCHhHHHHHHHhhc
Confidence 2379999999994 78889988776554
|
N-acetyl-glucosamine transferase is responsible for the synthesis of bacteria Poly-beta-1,6-N-acetyl-D-glucosamine (PGA). Poly-beta-1,6-N-acetyl-D-glucosamine is a homopolymer that serves as an adhesion for the maintenance of biofilm structural stability in diverse eubacteria. N-acetyl-glucosamine transferase is the product of gene pgaC. Genetic analysis indicated that all four genes of the pgaABCD locus were required for the PGA production, pgaC being a glycosyltransferase. |
| >PRK10714 undecaprenyl phosphate 4-deoxy-4-formamido-L-arabinose transferase; Provisional | Back alignment and domain information |
|---|
Probab=94.05 E-value=2 Score=35.63 Aligned_cols=93 Identities=12% Similarity=0.133 Sum_probs=55.7
Q ss_pred CCeehHHHHHHHHh----cCCCcCeEEEEeCCCc---hHHHHHHHHhcCCcEEE--ecCCccHHHHHHHHHhhcccCCCe
Q 028081 13 LGQPIALYSFYTFS----RMVEVKEIVVVCDPSY---SDIFEETKEKINVDLKF--SLPGKERQDSVYSGLQEVDFNSEL 83 (214)
Q Consensus 13 ~gkpli~~~i~~~~----~~~~~~~iiVv~~~~~---~~~~~~~~~~~~~~~~~--~~~~~~~~~sv~~al~~~~~~~~~ 83 (214)
+...-|..+++++. +.+.--+|+||-+... .+.+++..+..+..+.. .....+...++..|+++.. .|+
T Consensus 16 NE~~~i~~~l~~l~~~~~~~~~~~EIIvVDDgS~D~T~~il~~~~~~~~~~v~~i~~~~n~G~~~A~~~G~~~A~--gd~ 93 (325)
T PRK10714 16 NEQESLPELIRRTTAACESLGKEYEILLIDDGSSDNSAEMLVEAAQAPDSHIVAILLNRNYGQHSAIMAGFSHVT--GDL 93 (325)
T ss_pred CchhhHHHHHHHHHHHHHhCCCCEEEEEEeCCCCCcHHHHHHHHHhhcCCcEEEEEeCCCCCHHHHHHHHHHhCC--CCE
Confidence 44555666665543 2221236766654322 12223333333434432 2333455677888888765 789
Q ss_pred EEEEcCCCCCCCHHHHHHHHHHHHh
Q 028081 84 VCIHDSARPLVLSKDVQKVLMDALR 108 (214)
Q Consensus 84 vl~~~~d~P~v~~~~i~~~i~~~~~ 108 (214)
++++|+|.- .+|+.+.++++.+.+
T Consensus 94 vv~~DaD~q-~~p~~i~~l~~~~~~ 117 (325)
T PRK10714 94 IITLDADLQ-NPPEEIPRLVAKADE 117 (325)
T ss_pred EEEECCCCC-CCHHHHHHHHHHHHh
Confidence 999999996 599999999998754
|
|
| >TIGR03111 glyc2_xrt_Gpos1 putative glycosyltransferase TIGR03111 | Back alignment and domain information |
|---|
Probab=94.03 E-value=1.9 Score=37.21 Aligned_cols=94 Identities=6% Similarity=0.080 Sum_probs=57.9
Q ss_pred eCCeehHHHHHHHHhcCCCc-C--eEEEEeCCCchHHHHHH----HHhcC-CcEEEecCCccHHHHHHHHHhhcccCCCe
Q 028081 12 LLGQPIALYSFYTFSRMVEV-K--EIVVVCDPSYSDIFEET----KEKIN-VDLKFSLPGKERQDSVYSGLQEVDFNSEL 83 (214)
Q Consensus 12 l~gkpli~~~i~~~~~~~~~-~--~iiVv~~~~~~~~~~~~----~~~~~-~~~~~~~~~~~~~~sv~~al~~~~~~~~~ 83 (214)
.+....|..+++++.+...- + +|+|+-+... +...+. ...+. ..+.......+...++-.|++... .++
T Consensus 58 yNe~~~l~~~l~sl~~q~yp~~~~eIiVVDd~St-D~T~~il~~~~~~~~~v~v~~~~~~~Gka~AlN~gl~~s~--g~~ 134 (439)
T TIGR03111 58 YNSEDTLFNCIESIYNQTYPIELIDIILANNQST-DDSFQVFCRAQNEFPGLSLRYMNSDQGKAKALNAAIYNSI--GKY 134 (439)
T ss_pred CCChHHHHHHHHHHHhcCCCCCCeEEEEEECCCC-hhHHHHHHHHHHhCCCeEEEEeCCCCCHHHHHHHHHHHcc--CCE
Confidence 36778889999998754321 2 4666544332 322222 22222 122223333334556667777654 689
Q ss_pred EEEEcCCCCCCCHHHHHHHHHHHHhc
Q 028081 84 VCIHDSARPLVLSKDVQKVLMDALRV 109 (214)
Q Consensus 84 vl~~~~d~P~v~~~~i~~~i~~~~~~ 109 (214)
++++|+|. .++++.++++++.+.+.
T Consensus 135 v~~~DaD~-~~~~d~L~~l~~~f~~~ 159 (439)
T TIGR03111 135 IIHIDSDG-KLHKDAIKNMVTRFENN 159 (439)
T ss_pred EEEECCCC-CcChHHHHHHHHHHHhC
Confidence 99999999 45999999999988643
|
Members of this protein family probable glycosyltransferases of family 2, whose genes are near those for Gram-positive proteins (TIGR03110) related to the proposed exosortase (TIGR02602). |
| >COG1215 Glycosyltransferases, probably involved in cell wall biogenesis [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=93.99 E-value=0.76 Score=39.25 Aligned_cols=94 Identities=15% Similarity=0.176 Sum_probs=62.6
Q ss_pred CCee-hHHHHHHHHhcCCCcC-eEEEEeCCCchHHHHHHHHhcC----CcEEEe---cCCccHHHHHHHHHhhcccCCCe
Q 028081 13 LGQP-IALYSFYTFSRMVEVK-EIVVVCDPSYSDIFEETKEKIN----VDLKFS---LPGKERQDSVYSGLQEVDFNSEL 83 (214)
Q Consensus 13 ~gkp-li~~~i~~~~~~~~~~-~iiVv~~~~~~~~~~~~~~~~~----~~~~~~---~~~~~~~~sv~~al~~~~~~~~~ 83 (214)
+..+ .++.+++++.+...-+ +|+|+.+... +...+.+.+++ ..+.+. ....+...++..|+.... .|+
T Consensus 64 nE~~~~~~~~l~s~~~~dyp~~evivv~d~~~-d~~~~~~~~~~~~~~~~~~~~~~~~~~~gK~~al~~~l~~~~--~d~ 140 (439)
T COG1215 64 NEEPEVLEETLESLLSQDYPRYEVIVVDDGST-DETYEILEELGAEYGPNFRVIYPEKKNGGKAGALNNGLKRAK--GDV 140 (439)
T ss_pred CCchhhHHHHHHHHHhCCCCCceEEEECCCCC-hhHHHHHHHHHhhcCcceEEEeccccCccchHHHHHHHhhcC--CCE
Confidence 5566 7999999998765322 7888776443 44444444432 233333 222233566777887665 799
Q ss_pred EEEEcCCCCCCCHHHHHHHHHHHHhcC
Q 028081 84 VCIHDSARPLVLSKDVQKVLMDALRVG 110 (214)
Q Consensus 84 vl~~~~d~P~v~~~~i~~~i~~~~~~~ 110 (214)
|++.|+|. ...++.+.+++..+...+
T Consensus 141 V~~~DaD~-~~~~d~l~~~~~~f~~~~ 166 (439)
T COG1215 141 VVILDADT-VPEPDALRELVSPFEDPP 166 (439)
T ss_pred EEEEcCCC-CCChhHHHHHHhhhcCCC
Confidence 99999999 568999999998886543
|
|
| >cd02525 Succinoglycan_BP_ExoA ExoA is involved in the biosynthesis of succinoglycan | Back alignment and domain information |
|---|
Probab=93.97 E-value=1.1 Score=34.63 Aligned_cols=95 Identities=13% Similarity=0.093 Sum_probs=57.5
Q ss_pred CCeehHHHHHHHHhcCCC---cCeEEEEeCCCchHHHHHHHHhcC---CcEEEecC-CccHHHHHHHHHhhcccCCCeEE
Q 028081 13 LGQPIALYSFYTFSRMVE---VKEIVVVCDPSYSDIFEETKEKIN---VDLKFSLP-GKERQDSVYSGLQEVDFNSELVC 85 (214)
Q Consensus 13 ~gkpli~~~i~~~~~~~~---~~~iiVv~~~~~~~~~~~~~~~~~---~~~~~~~~-~~~~~~sv~~al~~~~~~~~~vl 85 (214)
+..+.|..+++.+.+... --+|+|+-+... +...+.++.+. ..+.++.. +.+...+.-.|++... .|+++
T Consensus 10 n~~~~l~~~l~sl~~q~~~~~~~evivvd~~s~-d~~~~~~~~~~~~~~~v~~i~~~~~~~~~a~N~g~~~a~--~d~v~ 86 (249)
T cd02525 10 NEEKYIEELLESLLNQSYPKDLIEIIVVDGGST-DGTREIVQEYAAKDPRIRLIDNPKRIQSAGLNIGIRNSR--GDIII 86 (249)
T ss_pred CchhhHHHHHHHHHhccCCCCccEEEEEeCCCC-ccHHHHHHHHHhcCCeEEEEeCCCCCchHHHHHHHHHhC--CCEEE
Confidence 445677888888865432 236777654432 22333333332 12444332 2223445566776654 79999
Q ss_pred EEcCCCCCCCHHHHHHHHHHHHhcCC
Q 028081 86 IHDSARPLVLSKDVQKVLMDALRVGA 111 (214)
Q Consensus 86 ~~~~d~P~v~~~~i~~~i~~~~~~~~ 111 (214)
++|+|. .++++.++++++.+...+.
T Consensus 87 ~lD~D~-~~~~~~l~~~~~~~~~~~~ 111 (249)
T cd02525 87 RVDAHA-VYPKDYILELVEALKRTGA 111 (249)
T ss_pred EECCCc-cCCHHHHHHHHHHHhcCCC
Confidence 999999 7799999999987655443
|
Succinoglycan Biosynthesis Protein ExoA catalyzes the formation of a beta-1,3 linkage of the second sugar (glucose) of the succinoglycan with the galactose on the lipid carrie. Succinoglycan is an acidic exopolysaccharide that is important for invasion of the nodules. Succinoglycan is a high-molecular-weight polymer composed of repeating octasaccharide units. These units are synthesized on membrane-bound isoprenoid lipid carriers, beginning with galactose followed by seven glucose molecules, and modified by the addition of acetate, succinate, and pyruvate. ExoA is a membrane protein with a transmembrance domain at c-terminus. |
| >cd04187 DPM1_like_bac Bacterial DPM1_like enzymes are related to eukaryotic DPM1 | Back alignment and domain information |
|---|
Probab=93.69 E-value=2.1 Score=31.59 Aligned_cols=91 Identities=15% Similarity=0.056 Sum_probs=51.5
Q ss_pred CeehHHHHHHHHhcC----CCcCeEEEEeCCCchHHHHHHHHhcC---CcEEEe--cCCccHHHHHHHHHhhcccCCCeE
Q 028081 14 GQPIALYSFYTFSRM----VEVKEIVVVCDPSYSDIFEETKEKIN---VDLKFS--LPGKERQDSVYSGLQEVDFNSELV 84 (214)
Q Consensus 14 gkpli~~~i~~~~~~----~~~~~iiVv~~~~~~~~~~~~~~~~~---~~~~~~--~~~~~~~~sv~~al~~~~~~~~~v 84 (214)
+.-.|..+++.+... ..-.+|+|+-+... +...+.++.+. .++.++ ....+...+...|+.... .+++
T Consensus 8 ~~~~l~~~l~sl~~~~~~~~~~~eiivvdd~s~-d~t~~~~~~~~~~~~~i~~i~~~~n~G~~~a~n~g~~~a~--~d~i 84 (181)
T cd04187 8 EEENLPELYERLKAVLESLGYDYEIIFVDDGST-DRTLEILRELAARDPRVKVIRLSRNFGQQAALLAGLDHAR--GDAV 84 (181)
T ss_pred chhhHHHHHHHHHHHHHhcCCCeEEEEEeCCCC-ccHHHHHHHHHhhCCCEEEEEecCCCCcHHHHHHHHHhcC--CCEE
Confidence 333455555554321 11246777755433 22222333221 123332 222234566677887765 6899
Q ss_pred EEEcCCCCCCCHHHHHHHHHHHHh
Q 028081 85 CIHDSARPLVLSKDVQKVLMDALR 108 (214)
Q Consensus 85 l~~~~d~P~v~~~~i~~~i~~~~~ 108 (214)
+++|+|..+ +++.++++++....
T Consensus 85 ~~~D~D~~~-~~~~l~~l~~~~~~ 107 (181)
T cd04187 85 ITMDADLQD-PPELIPEMLAKWEE 107 (181)
T ss_pred EEEeCCCCC-CHHHHHHHHHHHhC
Confidence 999999975 88999999987543
|
A family of bacterial enzymes related to eukaryotic DPM1; Although the mechanism of eukaryotic enzyme is well studied, the mechanism of the bacterial enzymes is not well understood. The eukaryotic DPM1 is the catalytic subunit of eukaryotic Dolichol-phosphate mannose (DPM) synthase. DPM synthase is required for synthesis of the glycosylphosphatidylinositol (GPI) anchor, N-glycan precursor, protein O-mannose, and C-mannose. The enzyme has three subunits, DPM1, DPM2 and DPM3. DPM is synthesized from dolichol phosphate and GDP-Man on the cytosolic surface of the ER membrane by DPM synthase and then is flipped onto the luminal side and used as a donor substrate. This protein family belongs to Glycosyltransferase 2 superfamily. |
| >cd02522 GT_2_like_a GT_2_like_a represents a glycosyltransferase family-2 subfamily with unknown function | Back alignment and domain information |
|---|
Probab=93.61 E-value=2 Score=32.68 Aligned_cols=93 Identities=13% Similarity=0.008 Sum_probs=56.2
Q ss_pred CCeehHHHHHHHHhcCC-CcCeEEEEeCCCchHHHHHHHHhcCCcEEEecCCccHHHHHHHHHhhcccCCCeEEEEcCCC
Q 028081 13 LGQPIALYSFYTFSRMV-EVKEIVVVCDPSYSDIFEETKEKINVDLKFSLPGKERQDSVYSGLQEVDFNSELVCIHDSAR 91 (214)
Q Consensus 13 ~gkpli~~~i~~~~~~~-~~~~iiVv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sv~~al~~~~~~~~~vl~~~~d~ 91 (214)
+..+.|..+++.+.+.. ...+|+|+-+... +...+.++.. .+.+.....+...+.-.|+.... .++++++|+|.
T Consensus 9 n~~~~l~~~l~sl~~q~~~~~evivvdd~s~-d~~~~~~~~~--~~~~~~~~~g~~~a~n~g~~~a~--~~~i~~~D~D~ 83 (221)
T cd02522 9 NEAENLPRLLASLRRLNPLPLEIIVVDGGST-DGTVAIARSA--GVVVISSPKGRARQMNAGAAAAR--GDWLLFLHADT 83 (221)
T ss_pred CcHHHHHHHHHHHHhccCCCcEEEEEeCCCC-ccHHHHHhcC--CeEEEeCCcCHHHHHHHHHHhcc--CCEEEEEcCCC
Confidence 44457888888887643 1246777654332 3334444443 34444433334444445666654 68999999998
Q ss_pred CCCCHHHHHHHHHHHHhcCC
Q 028081 92 PLVLSKDVQKVLMDALRVGA 111 (214)
Q Consensus 92 P~v~~~~i~~~i~~~~~~~~ 111 (214)
.++++.+++++......+.
T Consensus 84 -~~~~~~l~~l~~~~~~~~~ 102 (221)
T cd02522 84 -RLPPDWDAAIIETLRADGA 102 (221)
T ss_pred -CCChhHHHHHHHHhhcCCc
Confidence 6689999998766544433
|
Glycosyltransferase family 2 (GT-2) subfamily of unknown function. GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families. |
| >cd06433 GT_2_WfgS_like WfgS and WfeV are involved in O-antigen biosynthesis | Back alignment and domain information |
|---|
Probab=93.54 E-value=1.8 Score=32.03 Aligned_cols=93 Identities=13% Similarity=0.054 Sum_probs=54.4
Q ss_pred eCCeehHHHHHHHHhcCCCc-CeEEEEeCCCchHHHHHHHHhcCCc-EEEe-cCCccHHHHHHHHHhhcccCCCeEEEEc
Q 028081 12 LLGQPIALYSFYTFSRMVEV-KEIVVVCDPSYSDIFEETKEKINVD-LKFS-LPGKERQDSVYSGLQEVDFNSELVCIHD 88 (214)
Q Consensus 12 l~gkpli~~~i~~~~~~~~~-~~iiVv~~~~~~~~~~~~~~~~~~~-~~~~-~~~~~~~~sv~~al~~~~~~~~~vl~~~ 88 (214)
.++...|..+++.+.+...- -+|+||-+... +...+.++.+... ..+. ....+...+.-.|++... .+++++++
T Consensus 7 ~n~~~~l~~~l~sl~~q~~~~~evivvDd~s~-d~~~~~~~~~~~~~~~~~~~~~~g~~~a~n~~~~~a~--~~~v~~ld 83 (202)
T cd06433 7 YNQAETLEETIDSVLSQTYPNIEYIVIDGGST-DGTVDIIKKYEDKITYWISEPDKGIYDAMNKGIALAT--GDIIGFLN 83 (202)
T ss_pred cchHHHHHHHHHHHHhCCCCCceEEEEeCCCC-ccHHHHHHHhHhhcEEEEecCCcCHHHHHHHHHHHcC--CCEEEEeC
Confidence 35556788889888654311 25666643322 3334444444322 2222 222344566667887765 68999999
Q ss_pred CCCCCCCHHHHHHHHHHHHh
Q 028081 89 SARPLVLSKDVQKVLMDALR 108 (214)
Q Consensus 89 ~d~P~v~~~~i~~~i~~~~~ 108 (214)
+|. .+.++.+..++..+..
T Consensus 84 ~D~-~~~~~~~~~~~~~~~~ 102 (202)
T cd06433 84 SDD-TLLPGALLAVVAAFAE 102 (202)
T ss_pred CCc-ccCchHHHHHHHHHHh
Confidence 999 4556777777754433
|
Escherichia coli WfgS and Shigella dysenteriae WfeV are glycosyltransferase 2 family enzymes involved in O-antigen biosynthesis. GT-2 enzymes have GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families. |
| >cd04185 GT_2_like_b Subfamily of Glycosyltransferase Family GT2 of unknown function | Back alignment and domain information |
|---|
Probab=93.51 E-value=2.2 Score=32.11 Aligned_cols=94 Identities=12% Similarity=0.097 Sum_probs=56.5
Q ss_pred eCCeehHHHHHHHHhcCCC-cCeEEEEeCCCchHHHHHHHHhcCCc--EEEecC--CccHHHHHHHHHhhc-ccCCCeEE
Q 028081 12 LLGQPIALYSFYTFSRMVE-VKEIVVVCDPSYSDIFEETKEKINVD--LKFSLP--GKERQDSVYSGLQEV-DFNSELVC 85 (214)
Q Consensus 12 l~gkpli~~~i~~~~~~~~-~~~iiVv~~~~~~~~~~~~~~~~~~~--~~~~~~--~~~~~~sv~~al~~~-~~~~~~vl 85 (214)
.++...|..+++.+.+... -.+|+|+-+... +...+.++.+... +.+... ..+...++-.|++.. ....|+++
T Consensus 6 ~n~~~~l~~~l~sl~~q~~~~~eiiivD~~s~-d~t~~~~~~~~~~~~i~~~~~~~n~g~~~~~n~~~~~a~~~~~d~v~ 84 (202)
T cd04185 6 YNRLDLLKECLDALLAQTRPPDHIIVIDNAST-DGTAEWLTSLGDLDNIVYLRLPENLGGAGGFYEGVRRAYELGYDWIW 84 (202)
T ss_pred eCCHHHHHHHHHHHHhccCCCceEEEEECCCC-cchHHHHHHhcCCCceEEEECccccchhhHHHHHHHHHhccCCCEEE
Confidence 4666788999999976432 246777654332 3344555554422 233221 122233344444433 22478999
Q ss_pred EEcCCCCCCCHHHHHHHHHHHH
Q 028081 86 IHDSARPLVLSKDVQKVLMDAL 107 (214)
Q Consensus 86 ~~~~d~P~v~~~~i~~~i~~~~ 107 (214)
++|+|. .++++.++.+++.+.
T Consensus 85 ~ld~D~-~~~~~~l~~l~~~~~ 105 (202)
T cd04185 85 LMDDDA-IPDPDALEKLLAYAD 105 (202)
T ss_pred EeCCCC-CcChHHHHHHHHHHh
Confidence 999999 778999999998876
|
GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families. |
| >PF10111 Glyco_tranf_2_2: Glycosyltransferase like family 2; InterPro: IPR019290 This conserved domain is found in a set of prokaryotic proteins including putative glucosyltransferases, which are involved in bacterial capsule biosynthesis [, ] | Back alignment and domain information |
|---|
Probab=93.50 E-value=2.8 Score=33.86 Aligned_cols=29 Identities=14% Similarity=0.198 Sum_probs=24.4
Q ss_pred HHhhcccCCCeEEEEcCCCCCCCHHHHHHHHH
Q 028081 73 GLQEVDFNSELVCIHDSARPLVLSKDVQKVLM 104 (214)
Q Consensus 73 al~~~~~~~~~vl~~~~d~P~v~~~~i~~~i~ 104 (214)
|++... .++++++|+|+ +++++.+.+++.
T Consensus 83 g~~~A~--~d~l~flD~D~-i~~~~~i~~~~~ 111 (281)
T PF10111_consen 83 GAKYAR--GDYLIFLDADC-IPSPDFIEKLLN 111 (281)
T ss_pred HHHHcC--CCEEEEEcCCe-eeCHHHHHHHHH
Confidence 444443 78999999999 889999999998
|
|
| >cd06913 beta3GnTL1_like Beta 1, 3-N-acetylglucosaminyltransferase is essential for the formation of poly-N-acetyllactosamine | Back alignment and domain information |
|---|
Probab=93.26 E-value=1.5 Score=33.60 Aligned_cols=97 Identities=15% Similarity=0.136 Sum_probs=54.4
Q ss_pred eCCeehHHHHHHHHhcCCCc--CeEEEEeCCCc--h-HHHHHHHHhcC-CcEEEe--c--C--CccHHHHHHHHHhhccc
Q 028081 12 LLGQPIALYSFYTFSRMVEV--KEIVVVCDPSY--S-DIFEETKEKIN-VDLKFS--L--P--GKERQDSVYSGLQEVDF 79 (214)
Q Consensus 12 l~gkpli~~~i~~~~~~~~~--~~iiVv~~~~~--~-~~~~~~~~~~~-~~~~~~--~--~--~~~~~~sv~~al~~~~~ 79 (214)
.++...|..+++.+.+...- -+|+|+-+... . +.+++...++. ..+.+. . . ..+...+.-.|++...
T Consensus 6 yn~~~~l~~~l~sl~~q~~~~~~eiiVvDd~S~d~t~~i~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~a~N~g~~~a~- 84 (219)
T cd06913 6 HNGEQWLDECLESVLQQDFEGTLELSVFNDASTDKSAEIIEKWRKKLEDSGVIVLVGSHNSPSPKGVGYAKNQAIAQSS- 84 (219)
T ss_pred cCcHHHHHHHHHHHHhCCCCCCEEEEEEeCCCCccHHHHHHHHHHhCcccCeEEEEecccCCCCccHHHHHHHHHHhcC-
Confidence 45667888899988754321 26777655432 1 12233222222 123222 1 1 1233344445665543
Q ss_pred CCCeEEEEcCCCCCCCHHHHHHHHHHHHhcCC
Q 028081 80 NSELVCIHDSARPLVLSKDVQKVLMDALRVGA 111 (214)
Q Consensus 80 ~~~~vl~~~~d~P~v~~~~i~~~i~~~~~~~~ 111 (214)
.++++++|+|. +..++.+.+++..+.+...
T Consensus 85 -gd~i~~lD~D~-~~~~~~l~~~~~~~~~~~~ 114 (219)
T cd06913 85 -GRYLCFLDSDD-VMMPQRIRLQYEAALQHPN 114 (219)
T ss_pred -CCEEEEECCCc-cCChhHHHHHHHHHHhCCC
Confidence 68999999998 5677888888877655433
|
This family includes human Beta3GnTL1 and related eukaryotic proteins. Human Beta3GnTL1 is a putative beta-1,3-N-acetylglucosaminyltransferase. Beta3GnTL1 is expressed at various levels in most of tissues examined. Beta 1, 3-N-acetylglucosaminyltransferase has been found to be essential for the formation of poly-N-acetyllactosamine. Poly-N-acetyllactosamine is a unique carbohydrate composed of N-acetyllactosamine repeats. It is often an important part of cell-type-specific oligosaccharide structures and some functional oligosaccharides. It has been shown that the structure and biosynthesis of poly-N-acetyllactosamine display a dramatic change during development and oncogenesis. Several members of beta-1, 3-N-acetylglucosaminyltransferase have been identified. |
| >COG3222 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=93.25 E-value=2.7 Score=31.60 Aligned_cols=162 Identities=15% Similarity=0.133 Sum_probs=87.4
Q ss_pred ehHHHHHHHHhcCCCcCeEEEEeCC--C--chHHHHHHHHhcCCcEEEecCCccHHHHHHHHH-hhcccCCCeEEEEcCC
Q 028081 16 PIALYSFYTFSRMVEVKEIVVVCDP--S--YSDIFEETKEKINVDLKFSLPGKERQDSVYSGL-QEVDFNSELVCIHDSA 90 (214)
Q Consensus 16 pli~~~i~~~~~~~~~~~iiVv~~~--~--~~~~~~~~~~~~~~~~~~~~~~~~~~~sv~~al-~~~~~~~~~vl~~~~d 90 (214)
-|++|++++..+.+...+.+.-+++ . +...++.+. |....+-..|+...+-+..+. ..+. ....|+++--|
T Consensus 38 ~lle~tl~~v~~~~~~~~a~l~~~d~d~~~dlq~m~~~L---g~~lvyqpqGdd~gdRlars~~~a~~-~~~~VliIg~D 113 (211)
T COG3222 38 QLLEDTLDAVAAAPVTARAVLLIGDLDSGGDLQEMRRWL---GSFLVYQPQGDDLGDRLARSHVDAFD-GSYPVLIIGMD 113 (211)
T ss_pred HHHHHHHHHHHhhhhhhcceeeeecccccccHHHHHHHh---hhheeecccCCCHHHHHHHHHHHHhc-CCCcEEEEecC
Confidence 4789999998887656555554442 1 123344433 333444445554444443332 2222 23568888899
Q ss_pred CCCCCHHHHHHHHHHHHhcCCeEEeeeccccEEEecCCCceeeecCccchhhhcCCcccChHHHHHHHHHHHhcCCC-CC
Q 028081 91 RPLVLSKDVQKVLMDALRVGAAVLGVPAKATIKEANSESFVVRTLDRKTLWEMQTPQVIKPDLLKKGFELVNREGLE-VT 169 (214)
Q Consensus 91 ~P~v~~~~i~~~i~~~~~~~~~i~~~~~~~~~~~~~~~g~v~~~~~r~~~~~~~~p~~f~~~~l~~~~~~~~~~~~~-~~ 169 (214)
+|-++.+.+..++.++....++. -|..+ +|+-.--+.| ..|..| +...-.+.. +.
T Consensus 114 cP~lt~elLa~a~taL~~~paVL--Gpa~d-------GGy~llgLrr------~~pe~f---------e~ipwg~~~v~~ 169 (211)
T COG3222 114 CPGLTAELLADAFTALLQIPAVL--GPAFD-------GGYYLLGLRR------FAPELF---------EAIPWGTPDVLE 169 (211)
T ss_pred CCccCHHHHHHHHHHHhcCccee--ccccc-------CcEEEEEeec------cCHHHH---------hcCCCCCchHHH
Confidence 99999999999998876655332 22222 4431100000 012111 111000000 00
Q ss_pred cHHHHHHhCCCCeEEEecCCCCcccCCHHHHHHHHHHhh
Q 028081 170 DDVSIVEHLKHPVYITEGSYTNIKVTTPDDLLIAERILN 208 (214)
Q Consensus 170 d~~~~~~~~g~~i~~v~~~~~~~~Idtp~Dl~~a~~~~~ 208 (214)
-....++++|..++.++ ...|||.|+|+.++..+..
T Consensus 170 lTl~~lrqng~~~~llp---~L~DvDrpdDLp~l~~~~~ 205 (211)
T COG3222 170 LTLKALRQNGIDVYLLP---RLGDVDRPDDLPLLRDCCA 205 (211)
T ss_pred HHHHHHHHcCCcccccC---ccccCCCcchhHHHHHhcc
Confidence 01334566777766553 4579999999999887654
|
|
| >PLN02726 dolichyl-phosphate beta-D-mannosyltransferase | Back alignment and domain information |
|---|
Probab=93.19 E-value=1.9 Score=33.81 Aligned_cols=96 Identities=17% Similarity=0.154 Sum_probs=54.8
Q ss_pred CCeehHHHHHHHHhcCC-C--cCeEEEEeCCCc---hHHHHHHHHhcC-CcEEEec--CCccHHHHHHHHHhhcccCCCe
Q 028081 13 LGQPIALYSFYTFSRMV-E--VKEIVVVCDPSY---SDIFEETKEKIN-VDLKFSL--PGKERQDSVYSGLQEVDFNSEL 83 (214)
Q Consensus 13 ~gkpli~~~i~~~~~~~-~--~~~iiVv~~~~~---~~~~~~~~~~~~-~~~~~~~--~~~~~~~sv~~al~~~~~~~~~ 83 (214)
+...-|..+++.+.+.. . --+|+|+-+... .+.++++.+.++ ..+.++. +..+...+...|+.... .++
T Consensus 19 ne~~~l~~~l~~l~~~~~~~~~~eiivvDdgS~D~t~~i~~~~~~~~~~~~v~~~~~~~n~G~~~a~n~g~~~a~--g~~ 96 (243)
T PLN02726 19 NERLNIALIVYLIFKALQDVKDFEIIVVDDGSPDGTQDVVKQLQKVYGEDRILLRPRPGKLGLGTAYIHGLKHAS--GDF 96 (243)
T ss_pred CchhhHHHHHHHHHHHhccCCCeEEEEEeCCCCCCHHHHHHHHHHhcCCCcEEEEecCCCCCHHHHHHHHHHHcC--CCE
Confidence 45566666666554321 1 126666644322 122333333333 2343332 22233556667777654 689
Q ss_pred EEEEcCCCCCCCHHHHHHHHHHHHhcCC
Q 028081 84 VCIHDSARPLVLSKDVQKVLMDALRVGA 111 (214)
Q Consensus 84 vl~~~~d~P~v~~~~i~~~i~~~~~~~~ 111 (214)
++++|+|.- .+++.+..+++.+...+.
T Consensus 97 i~~lD~D~~-~~~~~l~~l~~~~~~~~~ 123 (243)
T PLN02726 97 VVIMDADLS-HHPKYLPSFIKKQRETGA 123 (243)
T ss_pred EEEEcCCCC-CCHHHHHHHHHHHHhcCC
Confidence 999999996 599999999987755443
|
|
| >cd04188 DPG_synthase DPG_synthase is involved in protein N-linked glycosylation | Back alignment and domain information |
|---|
Probab=93.11 E-value=1.1 Score=34.03 Aligned_cols=95 Identities=13% Similarity=0.097 Sum_probs=55.8
Q ss_pred CCeehHHHHHHHHhcCC-----CcCeEEEEeCCCc---hHHHHHHHHhcCCcEEEec--CCccHHHHHHHHHhhcccCCC
Q 028081 13 LGQPIALYSFYTFSRMV-----EVKEIVVVCDPSY---SDIFEETKEKINVDLKFSL--PGKERQDSVYSGLQEVDFNSE 82 (214)
Q Consensus 13 ~gkpli~~~i~~~~~~~-----~~~~iiVv~~~~~---~~~~~~~~~~~~~~~~~~~--~~~~~~~sv~~al~~~~~~~~ 82 (214)
+...-|..+++.+.+.. .-.+|+|+-+... .+.+++....++..+.++. ...+...++..|++... .+
T Consensus 7 N~~~~l~~~l~~l~~~~~~~~~~~~eiivvdd~S~D~t~~~~~~~~~~~~~~i~~i~~~~n~G~~~a~~~g~~~a~--gd 84 (211)
T cd04188 7 NEEKRLPPTLEEAVEYLEERPSFSYEIIVVDDGSKDGTAEVARKLARKNPALIRVLTLPKNRGKGGAVRAGMLAAR--GD 84 (211)
T ss_pred ChHHHHHHHHHHHHHHHhccCCCCEEEEEEeCCCCCchHHHHHHHHHhCCCcEEEEEcccCCCcHHHHHHHHHHhc--CC
Confidence 44455666777765431 1246777644332 1223333333343223332 22334666777887765 68
Q ss_pred eEEEEcCCCCCCCHHHHHHHHHHHHhcC
Q 028081 83 LVCIHDSARPLVLSKDVQKVLMDALRVG 110 (214)
Q Consensus 83 ~vl~~~~d~P~v~~~~i~~~i~~~~~~~ 110 (214)
+++++|+|. ..+++.+.++++.+...+
T Consensus 85 ~i~~ld~D~-~~~~~~l~~l~~~~~~~~ 111 (211)
T cd04188 85 YILFADADL-ATPFEELEKLEEALKTSG 111 (211)
T ss_pred EEEEEeCCC-CCCHHHHHHHHHHHhccC
Confidence 999999998 568999999998754433
|
UDP-glucose:dolichyl-phosphate glucosyltransferase (DPG_synthase) is a transmembrane-bound enzyme of the endoplasmic reticulum involved in protein N-linked glycosylation. This enzyme catalyzes the transfer of glucose from UDP-glucose to dolichyl phosphate. |
| >cd02510 pp-GalNAc-T pp-GalNAc-T initiates the formation of mucin-type O-linked glycans | Back alignment and domain information |
|---|
Probab=93.06 E-value=2.9 Score=33.89 Aligned_cols=95 Identities=14% Similarity=0.015 Sum_probs=57.2
Q ss_pred CCe-ehHHHHHHHHhcCCC--c-CeEEEEeCCCchHHHHHHH-----HhcCCcEEEecC--CccHHHHHHHHHhhcccCC
Q 028081 13 LGQ-PIALYSFYTFSRMVE--V-KEIVVVCDPSYSDIFEETK-----EKINVDLKFSLP--GKERQDSVYSGLQEVDFNS 81 (214)
Q Consensus 13 ~gk-pli~~~i~~~~~~~~--~-~~iiVv~~~~~~~~~~~~~-----~~~~~~~~~~~~--~~~~~~sv~~al~~~~~~~ 81 (214)
+.. ..|..+++.+.+... . .+||||-+... +...+.+ ......+.++.. ..+...+.-.|++... .
T Consensus 8 N~~~~~l~~~l~Sl~~~~~~~~~~EIIvVDd~S~-d~t~~~~~~~~~~~~~~~v~vi~~~~n~G~~~a~N~g~~~A~--g 84 (299)
T cd02510 8 NEALSTLLRTVHSVINRTPPELLKEIILVDDFSD-KPELKLLLEEYYKKYLPKVKVLRLKKREGLIRARIAGARAAT--G 84 (299)
T ss_pred cCcHHHHHHHHHHHHhcCchhcCCEEEEEECCCC-chHHHHHHHHHHhhcCCcEEEEEcCCCCCHHHHHHHHHHHcc--C
Confidence 344 588889998875321 1 37888765442 2122221 222224555432 2223444455666654 7
Q ss_pred CeEEEEcCCCCCCCHHHHHHHHHHHHhcCC
Q 028081 82 ELVCIHDSARPLVLSKDVQKVLMDALRVGA 111 (214)
Q Consensus 82 ~~vl~~~~d~P~v~~~~i~~~i~~~~~~~~ 111 (214)
++++++|+|.=+ +++-++.+++.+.....
T Consensus 85 d~i~fLD~D~~~-~~~wL~~ll~~l~~~~~ 113 (299)
T cd02510 85 DVLVFLDSHCEV-NVGWLEPLLARIAENRK 113 (299)
T ss_pred CEEEEEeCCccc-CccHHHHHHHHHHhCCC
Confidence 999999999954 89999999998865443
|
UDP-GalNAc: polypeptide alpha-N-acetylgalactosaminyltransferases (pp-GalNAc-T) initiate the formation of mucin-type, O-linked glycans by catalyzing the transfer of alpha-N-acetylgalactosamine (GalNAc) from UDP-GalNAc to hydroxyl groups of Ser or Thr residues of core proteins to form the Tn antigen (GalNAc-a-1-O-Ser/Thr). These enzymes are type II membrane proteins with a GT-A type catalytic domain and a lectin domain located on the lumen side of the Golgi apparatus. In human, there are 15 isozymes of pp-GalNAc-Ts, representing the largest of all glycosyltransferase families. Each isozyme has unique but partially redundant substrate specificity for glycosylation sites on acceptor proteins. |
| >TIGR03030 CelA cellulose synthase catalytic subunit (UDP-forming) | Back alignment and domain information |
|---|
Probab=92.99 E-value=2.8 Score=38.69 Aligned_cols=98 Identities=14% Similarity=0.175 Sum_probs=61.7
Q ss_pred eeeeCCee--hHHHHHHHHhcCCCc-C--eEEEEeCCC-----------------chHHHHHHHHhcCCcEEEecC-Ccc
Q 028081 9 YLPLLGQP--IALYSFYTFSRMVEV-K--EIVVVCDPS-----------------YSDIFEETKEKINVDLKFSLP-GKE 65 (214)
Q Consensus 9 l~~l~gkp--li~~~i~~~~~~~~~-~--~iiVv~~~~-----------------~~~~~~~~~~~~~~~~~~~~~-~~~ 65 (214)
+.|..+.+ ++..+++++.+...- + +|+|+-|.. ..+.++++++++++.+..... ...
T Consensus 136 iIP~yNE~~~iv~~tl~s~~~~dYP~~~~eIiVvDDgStD~t~~~~~~~~~~~~~~~~~~~~l~~~~~v~yi~r~~n~~~ 215 (713)
T TIGR03030 136 FIPTYNEDLEIVATTVLAAKNMDYPADKFRVWILDDGGTDQKRNDPDPEQAEAAQRREELKEFCRKLGVNYITRPRNVHA 215 (713)
T ss_pred EEcCCCCCHHHHHHHHHHHHhCCCCccceEEEEEECcCCccccccchhhhhhhhhhHHHHHHHHHHcCcEEEECCCCCCC
Confidence 55666665 567789888764422 2 567665431 113455666666543322121 112
Q ss_pred HHHHHHHHHhhcccCCCeEEEEcCCCCCCCHHHHHHHHHHHHhc
Q 028081 66 RQDSVYSGLQEVDFNSELVCIHDSARPLVLSKDVQKVLMDALRV 109 (214)
Q Consensus 66 ~~~sv~~al~~~~~~~~~vl~~~~d~P~v~~~~i~~~i~~~~~~ 109 (214)
....+-+|++... .|+++++|+|. ..+++.+++++..+...
T Consensus 216 KAgnLN~al~~a~--gd~Il~lDAD~-v~~pd~L~~~v~~f~~d 256 (713)
T TIGR03030 216 KAGNINNALKHTD--GELILIFDADH-VPTRDFLQRTVGWFVED 256 (713)
T ss_pred ChHHHHHHHHhcC--CCEEEEECCCC-CcChhHHHHHHHHHHhC
Confidence 2556777887765 68999999999 56899999999887543
|
Cellulose synthase catalyzes the beta-1,4 polymerization of glucose residues in the formation of cellulose. In bacteria, the substrate is UDP-glucose. The synthase consists of two subunits (or domains in the frequent cases where it is encoded as a single polypeptide), the catalytic domain modelled here and the regulatory domain (pfam03170). The regulatory domain binds the allosteric activator cyclic di-GMP. The protein is membrane-associated and probably assembles into multimers such that the individual cellulose strands can self-assemble into multi-strand fibrils. |
| >PRK14583 hmsR N-glycosyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=92.81 E-value=2.6 Score=36.48 Aligned_cols=96 Identities=13% Similarity=0.080 Sum_probs=59.3
Q ss_pred eeee-CCeehHHHHHHHHhcCCC-cCeEEEEeCCCc---hHHHHHHHHhcCCcEEEec--CCccHHHHHHHHHhhcccCC
Q 028081 9 YLPL-LGQPIALYSFYTFSRMVE-VKEIVVVCDPSY---SDIFEETKEKINVDLKFSL--PGKERQDSVYSGLQEVDFNS 81 (214)
Q Consensus 9 l~~l-~gkpli~~~i~~~~~~~~-~~~iiVv~~~~~---~~~~~~~~~~~~~~~~~~~--~~~~~~~sv~~al~~~~~~~ 81 (214)
+.+. +...-|..+++++.+... --+|+|+.+... .+.+++....+. .+.++. ...+...+.-.|+.... .
T Consensus 80 iIP~yNE~~~i~~~l~sll~q~yp~~eIivVdDgs~D~t~~~~~~~~~~~~-~v~vv~~~~n~Gka~AlN~gl~~a~--~ 156 (444)
T PRK14583 80 LVPCFNEGLNARETIHAALAQTYTNIEVIAINDGSSDDTAQVLDALLAEDP-RLRVIHLAHNQGKAIALRMGAAAAR--S 156 (444)
T ss_pred EEEeCCCHHHHHHHHHHHHcCCCCCeEEEEEECCCCccHHHHHHHHHHhCC-CEEEEEeCCCCCHHHHHHHHHHhCC--C
Confidence 4443 445668889988876421 136777755432 122333333332 333332 33344666677776654 7
Q ss_pred CeEEEEcCCCCCCCHHHHHHHHHHHHh
Q 028081 82 ELVCIHDSARPLVLSKDVQKVLMDALR 108 (214)
Q Consensus 82 ~~vl~~~~d~P~v~~~~i~~~i~~~~~ 108 (214)
|+++++|+|. ..+++.+.++++.+.+
T Consensus 157 d~iv~lDAD~-~~~~d~L~~lv~~~~~ 182 (444)
T PRK14583 157 EYLVCIDGDA-LLDKNAVPYLVAPLIA 182 (444)
T ss_pred CEEEEECCCC-CcCHHHHHHHHHHHHh
Confidence 9999999999 6799999999987754
|
|
| >TIGR03472 HpnI hopanoid biosynthesis associated glycosyl transferase protein HpnI | Back alignment and domain information |
|---|
Probab=92.77 E-value=2.8 Score=35.31 Aligned_cols=99 Identities=13% Similarity=0.168 Sum_probs=60.2
Q ss_pred eeee-CCeehHHHHHHHHhcCCC-cCeEEEEeCCCc---hHHHHHHHHhcC-CcEEEecC----Cc-cHHHHHHHHHhhc
Q 028081 9 YLPL-LGQPIALYSFYTFSRMVE-VKEIVVVCDPSY---SDIFEETKEKIN-VDLKFSLP----GK-ERQDSVYSGLQEV 77 (214)
Q Consensus 9 l~~l-~gkpli~~~i~~~~~~~~-~~~iiVv~~~~~---~~~~~~~~~~~~-~~~~~~~~----~~-~~~~sv~~al~~~ 77 (214)
+.|. |..+.|..+++++.+... --+|+|+.++.. .+.+++..+.+. .++.++.. |. .......++++..
T Consensus 46 iiP~~nee~~l~~~L~Sl~~q~Yp~~EIivvdd~s~D~t~~iv~~~~~~~p~~~i~~v~~~~~~G~~~K~~~l~~~~~~a 125 (373)
T TIGR03472 46 LKPLHGDEPELYENLASFCRQDYPGFQMLFGVQDPDDPALAVVRRLRADFPDADIDLVIDARRHGPNRKVSNLINMLPHA 125 (373)
T ss_pred EEECCCCChhHHHHHHHHHhcCCCCeEEEEEeCCCCCcHHHHHHHHHHhCCCCceEEEECCCCCCCChHHHHHHHHHHhc
Confidence 4443 567889999999875432 147777654432 122344444443 23444422 11 1234455555554
Q ss_pred ccCCCeEEEEcCCCCCCCHHHHHHHHHHHHhcC
Q 028081 78 DFNSELVCIHDSARPLVLSKDVQKVLMDALRVG 110 (214)
Q Consensus 78 ~~~~~~vl~~~~d~P~v~~~~i~~~i~~~~~~~ 110 (214)
. .|+++++|+|. .++++-+++++..++..+
T Consensus 126 ~--ge~i~~~DaD~-~~~p~~L~~lv~~~~~~~ 155 (373)
T TIGR03472 126 R--HDILVIADSDI-SVGPDYLRQVVAPLADPD 155 (373)
T ss_pred c--CCEEEEECCCC-CcChhHHHHHHHHhcCCC
Confidence 3 79999999998 669999999998875433
|
This family of genes include a glycosyl transferase, group 2 domain (pfam00535) which are responsible, generally for the transfer of nucleotide-diphosphate sugars to substrates such as polysaccharides and lipids. The member of this clade from Acidithiobacillus ferrooxidans ATCC 23270 (AFE_0974) is found in the same locus as squalene-hopene cyclase (SHC, TIGR01507) and other genes associated with the biosynthesis of hopanoid natural products. Similarly, in Ralstonia eutropha JMP134 (Reut_B4902) this gene is adjacent to HpnAB, IspH and HpnH (TIGR03470), although SHC itself is elsewhere in the genome. Notably, this gene (here named HpnI) and three others form a conserved set (HpnIJKL) which occur in a subset of all genomes containing the SHC enzyme. This relationship was discerned using the method of partial phylogenetic profiling. This group includes Zymomonas mobilis, the organism where the initial hopano |
| >cd04196 GT_2_like_d Subfamily of Glycosyltransferase Family GT2 of unknown function | Back alignment and domain information |
|---|
Probab=92.62 E-value=2.4 Score=31.96 Aligned_cols=94 Identities=17% Similarity=0.141 Sum_probs=54.7
Q ss_pred eCCeehHHHHHHHHhcCCC-cCeEEEEeCCCc---hHHHHHHHHhcCCcEEEec--CCccHHHHHHHHHhhcccCCCeEE
Q 028081 12 LLGQPIALYSFYTFSRMVE-VKEIVVVCDPSY---SDIFEETKEKINVDLKFSL--PGKERQDSVYSGLQEVDFNSELVC 85 (214)
Q Consensus 12 l~gkpli~~~i~~~~~~~~-~~~iiVv~~~~~---~~~~~~~~~~~~~~~~~~~--~~~~~~~sv~~al~~~~~~~~~vl 85 (214)
.+....|..+++.+.+... --+|+|+-+... .+.+++....++..+.+.. ...+...+...|+.... .++++
T Consensus 7 yn~~~~l~~~l~sl~~q~~~~~eiiVvddgS~d~t~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~n~g~~~~~--g~~v~ 84 (214)
T cd04196 7 YNGEKYLREQLDSILAQTYKNDELIISDDGSTDGTVEIIKEYIDKDPFIIILIRNGKNLGVARNFESLLQAAD--GDYVF 84 (214)
T ss_pred cCcHHHHHHHHHHHHhCcCCCeEEEEEeCCCCCCcHHHHHHHHhcCCceEEEEeCCCCccHHHHHHHHHHhCC--CCEEE
Confidence 3455678888888875431 135666644322 1223333333322233332 22234555566766554 79999
Q ss_pred EEcCCCCCCCHHHHHHHHHHHHh
Q 028081 86 IHDSARPLVLSKDVQKVLMDALR 108 (214)
Q Consensus 86 ~~~~d~P~v~~~~i~~~i~~~~~ 108 (214)
++|+|- .+.++.+..+++.+..
T Consensus 85 ~ld~Dd-~~~~~~l~~~~~~~~~ 106 (214)
T cd04196 85 FCDQDD-IWLPDKLERLLKAFLK 106 (214)
T ss_pred EECCCc-ccChhHHHHHHHHHhc
Confidence 999997 5579999999987443
|
GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families. |
| >KOG2978 consensus Dolichol-phosphate mannosyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=92.53 E-value=2 Score=32.68 Aligned_cols=93 Identities=14% Similarity=0.136 Sum_probs=56.4
Q ss_pred CeehHHHHHHHHhcCCCcC-eEEEEeCCC---chHHHHHHHHhcCC-cEEEec--CCccHHHHHHHHHhhcccCCCeEEE
Q 028081 14 GQPIALYSFYTFSRMVEVK-EIVVVCDPS---YSDIFEETKEKINV-DLKFSL--PGKERQDSVYSGLQEVDFNSELVCI 86 (214)
Q Consensus 14 gkpli~~~i~~~~~~~~~~-~iiVv~~~~---~~~~~~~~~~~~~~-~~~~~~--~~~~~~~sv~~al~~~~~~~~~vl~ 86 (214)
+-|++.|.+.........+ +||++-+.. ..+..+++.+.+|. ++.+.+ +--+-..+..+|+.++. .+++++
T Consensus 17 Nlpi~~~li~~~~~e~~~~~eiIivDD~SpDGt~~~a~~L~k~yg~d~i~l~pR~~klGLgtAy~hgl~~a~--g~fivi 94 (238)
T KOG2978|consen 17 NLPIITRLIAKYMSEEGKKYEIIIVDDASPDGTQEVAKALQKIYGEDNILLKPRTKKLGLGTAYIHGLKHAT--GDFIVI 94 (238)
T ss_pred CCeeeHHHHHhhhhhhcCceEEEEEeCCCCCccHHHHHHHHHHhCCCcEEEEeccCcccchHHHHhhhhhcc--CCeEEE
Confidence 4577888777665422333 566654322 12334444444664 333332 22223566788998886 689999
Q ss_pred EcCCCCCCCHHHHHHHHHHHHhc
Q 028081 87 HDSARPLVLSKDVQKVLMDALRV 109 (214)
Q Consensus 87 ~~~d~P~v~~~~i~~~i~~~~~~ 109 (214)
+|+|--- .|..|-++++...++
T Consensus 95 MDaDlsH-hPk~ipe~i~lq~~~ 116 (238)
T KOG2978|consen 95 MDADLSH-HPKFIPEFIRLQKEG 116 (238)
T ss_pred EeCccCC-CchhHHHHHHHhhcc
Confidence 9999844 688899999876554
|
|
| >cd02526 GT2_RfbF_like RfbF is a putative dTDP-rhamnosyl transferase | Back alignment and domain information |
|---|
Probab=92.49 E-value=3.2 Score=31.95 Aligned_cols=89 Identities=13% Similarity=0.110 Sum_probs=54.5
Q ss_pred eeeCCe-ehHHHHHHHHhcCCCcCeEEEEeCCCchHHHHHHHHhc-CCcEEEec--CCccHHHHHHHHHhhccc-CCCeE
Q 028081 10 LPLLGQ-PIALYSFYTFSRMVEVKEIVVVCDPSYSDIFEETKEKI-NVDLKFSL--PGKERQDSVYSGLQEVDF-NSELV 84 (214)
Q Consensus 10 ~~l~gk-pli~~~i~~~~~~~~~~~iiVv~~~~~~~~~~~~~~~~-~~~~~~~~--~~~~~~~sv~~al~~~~~-~~~~v 84 (214)
...++. ..|..+++.+.+. ..+|+|+=+... +..... ..+ ...+.++. ...+...+.-.|++.... +.+++
T Consensus 4 ~~yn~~~~~l~~~l~sl~~q--~~~iivvDn~s~-~~~~~~-~~~~~~~i~~i~~~~n~G~~~a~N~g~~~a~~~~~d~v 79 (237)
T cd02526 4 VTYNPDLSKLKELLAALAEQ--VDKVVVVDNSSG-NDIELR-LRLNSEKIELIHLGENLGIAKALNIGIKAALENGADYV 79 (237)
T ss_pred EEecCCHHHHHHHHHHHhcc--CCEEEEEeCCCC-ccHHHH-hhccCCcEEEEECCCceehHHhhhHHHHHHHhCCCCEE
Confidence 346677 8899999998864 467777644432 222222 222 22343332 222334555567766542 46999
Q ss_pred EEEcCCCCCCCHHHHHHHH
Q 028081 85 CIHDSARPLVLSKDVQKVL 103 (214)
Q Consensus 85 l~~~~d~P~v~~~~i~~~i 103 (214)
+++|+|.- ++++.+..++
T Consensus 80 ~~lD~D~~-~~~~~l~~l~ 97 (237)
T cd02526 80 LLFDQDSV-PPPDMVEKLL 97 (237)
T ss_pred EEECCCCC-cCHhHHHHHH
Confidence 99999995 5899999996
|
Shigella flexneri RfbF protein is a putative dTDP-rhamnosyl transferase. dTDP rhamnosyl transferases of Shigella flexneri add rhamnose sugars to N-acetyl-glucosamine in the O-antigen tetrasaccharide repeat. Lipopolysaccharide O antigens are important virulence determinants for many bacteria. The variations of sugar composition, the sequence of the sugars and the linkages in the O antigen provide structural diversity of the O antigen. |
| >COG1216 Predicted glycosyltransferases [General function prediction only] | Back alignment and domain information |
|---|
Probab=92.09 E-value=2.4 Score=34.65 Aligned_cols=104 Identities=12% Similarity=0.066 Sum_probs=61.0
Q ss_pred ceeeeeCCeehHHHHHHHHhcCCCcCeEEEEeCCCchHHHHHHHHhc-CCcEEEecCCccH--HHHHHHHHhhcccC-CC
Q 028081 7 KQYLPLLGQPIALYSFYTFSRMVEVKEIVVVCDPSYSDIFEETKEKI-NVDLKFSLPGKER--QDSVYSGLQEVDFN-SE 82 (214)
Q Consensus 7 K~l~~l~gkpli~~~i~~~~~~~~~~~iiVv~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~--~~sv~~al~~~~~~-~~ 82 (214)
..+...+...-+..+++.+.+....+..+|+++....+...+.++.. ...+.++..+... ..+.-.|+.....+ ++
T Consensus 7 ~iiv~yn~~~~l~~~l~~l~~~~~~~~~iv~vDn~s~d~~~~~~~~~~~~~v~~i~~~~NlG~agg~n~g~~~a~~~~~~ 86 (305)
T COG1216 7 IIIVTYNRGEDLVECLASLAAQTYPDDVIVVVDNGSTDGSLEALKARFFPNVRLIENGENLGFAGGFNRGIKYALAKGDD 86 (305)
T ss_pred EEEEecCCHHHHHHHHHHHhcCCCCCcEEEEccCCCCCCCHHHHHhhcCCcEEEEEcCCCccchhhhhHHHHHHhcCCCc
Confidence 34566788888999999888766555555544433222233334433 3345555332211 22222233333222 23
Q ss_pred eEEEEcCCCCCCCHHHHHHHHHHHHhcCC
Q 028081 83 LVCIHDSARPLVLSKDVQKVLMDALRVGA 111 (214)
Q Consensus 83 ~vl~~~~d~P~v~~~~i~~~i~~~~~~~~ 111 (214)
++++++.|. .+.++.|+++++.+...+.
T Consensus 87 ~~l~LN~D~-~~~~~~l~~ll~~~~~~~~ 114 (305)
T COG1216 87 YVLLLNPDT-VVEPDLLEELLKAAEEDPA 114 (305)
T ss_pred EEEEEcCCe-eeChhHHHHHHHHHHhCCC
Confidence 899999995 6689999999998887644
|
|
| >PTZ00339 UDP-N-acetylglucosamine pyrophosphorylase; Provisional | Back alignment and domain information |
|---|
Probab=91.43 E-value=0.5 Score=41.29 Aligned_cols=101 Identities=14% Similarity=0.127 Sum_probs=61.8
Q ss_pred CCCCCCceeeee---CCeehHHHHHHHHhcCC------------CcCeEEEEeCCCchHHHHHHHHhc---CC---cEE-
Q 028081 1 MGANMPKQYLPL---LGQPIALYSFYTFSRMV------------EVKEIVVVCDPSYSDIFEETKEKI---NV---DLK- 58 (214)
Q Consensus 1 m~~~~~K~l~~l---~gkpli~~~i~~~~~~~------------~~~~iiVv~~~~~~~~~~~~~~~~---~~---~~~- 58 (214)
||.+.||+++++ .|||++++.+++++... ..-.++|.|.....+.+.+..++. |. .+.
T Consensus 120 Lg~~~PK~ll~I~~~~gksL~q~~~erI~~l~~~~~~~~~~~~~~~Ip~~IMTS~~t~~~t~~~f~~~~~FGl~~~~V~~ 199 (482)
T PTZ00339 120 LGSDKPKGLLECTPVKKKTLFQFHCEKVRRLEEMAVAVSGGGDDPTIYILVLTSSFNHDQTRQFLEENNFFGLDKEQVIF 199 (482)
T ss_pred CCCCCCCeEeeecCCCCccHHHHHHHHHHHHhhhhhcccccccCCCCCEEEEeCcchHHHHHHHHHhccccCCCcccEEE
Confidence 567889999999 59999999999998641 112456665544334555555431 21 111
Q ss_pred -------------------------EecCCccHHHHHHHHHhh------cc-cCCCeEEEEcCCCCCC---CHHHHHHHH
Q 028081 59 -------------------------FSLPGKERQDSVYSGLQE------VD-FNSELVCIHDSARPLV---LSKDVQKVL 103 (214)
Q Consensus 59 -------------------------~~~~~~~~~~sv~~al~~------~~-~~~~~vl~~~~d~P~v---~~~~i~~~i 103 (214)
+.++| .+.++.+|.. +. ...+++.+...|-++. +|..|-.++
T Consensus 200 F~Q~~~P~i~~~~g~ill~~~~~i~~~P~G---nGgiy~aL~~sG~Ld~l~~~Gi~yi~v~~vDN~L~k~~DP~flG~~~ 276 (482)
T PTZ00339 200 FKQSSLPCYDENTGRFIMSSQGSLCTAPGG---NGDVFKALAKCSELMDIVRKGIKYVQVISIDNILAKVLDPEFIGLAS 276 (482)
T ss_pred EecCCcceEecCCCCcccCCCCceeeCCCC---CcHHHHHHHHCCcHHHHHHcCCEEEEEEecCcccccccCHHHhHHHH
Confidence 12222 2345555432 22 2367899999999966 666666655
Q ss_pred H
Q 028081 104 M 104 (214)
Q Consensus 104 ~ 104 (214)
+
T Consensus 277 ~ 277 (482)
T PTZ00339 277 S 277 (482)
T ss_pred H
Confidence 4
|
|
| >cd06437 CESA_CaSu_A2 Cellulose synthase catalytic subunit A2 (CESA2) is a catalytic subunit or a catalytic subunit substitute of the cellulose synthase complex | Back alignment and domain information |
|---|
Probab=91.41 E-value=3.9 Score=31.57 Aligned_cols=93 Identities=16% Similarity=0.101 Sum_probs=53.5
Q ss_pred eCCeehHHHHHHHHhcCCCc-C--eEEEEeCCCc--hHHHHHHHHhc---CCcEEEecCC--cc-HHHHHHHHHhhcccC
Q 028081 12 LLGQPIALYSFYTFSRMVEV-K--EIVVVCDPSY--SDIFEETKEKI---NVDLKFSLPG--KE-RQDSVYSGLQEVDFN 80 (214)
Q Consensus 12 l~gkpli~~~i~~~~~~~~~-~--~iiVv~~~~~--~~~~~~~~~~~---~~~~~~~~~~--~~-~~~sv~~al~~~~~~ 80 (214)
.+....|..+++++.+.... + +|+|+-+..+ .+.+++....+ +.++...... .+ ...++-.|++...
T Consensus 10 yNe~~~l~~~L~sl~~q~~~~~~~eIiVvD~s~D~t~~~~~~~~~~~~~~~~~i~~~~~~~~~G~k~~a~n~g~~~a~-- 87 (232)
T cd06437 10 FNEKYVVERLIEAACALDYPKDRLEIQVLDDSTDETVRLAREIVEEYAAQGVNIKHVRRADRTGYKAGALAEGMKVAK-- 87 (232)
T ss_pred CCcHHHHHHHHHHHHhcCCCccceEEEEEECCCCcHHHHHHHHHHHHhhcCCceEEEECCCCCCCchHHHHHHHHhCC--
Confidence 46667888999998754322 2 4555544322 12223332222 2334433211 11 2345556777654
Q ss_pred CCeEEEEcCCCCCCCHHHHHHHHHHHH
Q 028081 81 SELVCIHDSARPLVLSKDVQKVLMDAL 107 (214)
Q Consensus 81 ~~~vl~~~~d~P~v~~~~i~~~i~~~~ 107 (214)
.++++++|+|. .+.++.++.+...+.
T Consensus 88 ~~~i~~~DaD~-~~~~~~l~~~~~~~~ 113 (232)
T cd06437 88 GEYVAIFDADF-VPPPDFLQKTPPYFA 113 (232)
T ss_pred CCEEEEEcCCC-CCChHHHHHhhhhhc
Confidence 79999999999 568999999766553
|
Cellulose synthase (CESA) catalyzes the polymerization reaction of cellulose using UDP-glucose as the substrate. Cellulose is an aggregate of unbranched polymers of beta-1,4-linked glucose residues, which is an abundant polysaccharide produced by plants and in varying degrees by several other organisms including algae, bacteria, fungi, and even some animals. Genomes from higher plants harbor multiple CESA genes. There are ten in Arabidopsis. At least three different CESA proteins are required to form a functional complex. In Arabidopsis, CESA1, 3 and 6 and CESA4, 7 and 8, are required for cellulose biosynthesis during primary and secondary cell wall formation. CESA2 is very closely related to CESA6 and is viewed as a prime substitute for CESA6. They functionally compensate each other. The cesa2 and cesa6 double mutant plants we |
| >cd06420 GT2_Chondriotin_Pol_N N-terminal domain of Chondroitin polymerase functions as a GalNAc transferase | Back alignment and domain information |
|---|
Probab=91.41 E-value=4.4 Score=29.69 Aligned_cols=90 Identities=10% Similarity=0.034 Sum_probs=53.4
Q ss_pred CCeehHHHHHHHHhcCCC-cCeEEEEeCCCchHHHHHHHHhc----CCcEEEe-cC--CccHHHHHHHHHhhcccCCCeE
Q 028081 13 LGQPIALYSFYTFSRMVE-VKEIVVVCDPSYSDIFEETKEKI----NVDLKFS-LP--GKERQDSVYSGLQEVDFNSELV 84 (214)
Q Consensus 13 ~gkpli~~~i~~~~~~~~-~~~iiVv~~~~~~~~~~~~~~~~----~~~~~~~-~~--~~~~~~sv~~al~~~~~~~~~v 84 (214)
+....|..+++++.+... -.+|+|+-+... +...+.++.+ ..++..+ .. +.+...+.-.|++... .+++
T Consensus 7 n~~~~l~~~l~sl~~q~~~~~eiivvdd~s~-d~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~g~~~a~--g~~i 83 (182)
T cd06420 7 NRPEALELVLKSVLNQSILPFEVIIADDGST-EETKELIEEFKSQFPIPIKHVWQEDEGFRKAKIRNKAIAAAK--GDYL 83 (182)
T ss_pred CChHHHHHHHHHHHhccCCCCEEEEEeCCCc-hhHHHHHHHHHhhcCCceEEEEcCCcchhHHHHHHHHHHHhc--CCEE
Confidence 445668888999875432 246777655443 3333334332 2222222 21 1122334445666554 6899
Q ss_pred EEEcCCCCCCCHHHHHHHHHHH
Q 028081 85 CIHDSARPLVLSKDVQKVLMDA 106 (214)
Q Consensus 85 l~~~~d~P~v~~~~i~~~i~~~ 106 (214)
+++|+|. ..+++-+.++++.+
T Consensus 84 ~~lD~D~-~~~~~~l~~~~~~~ 104 (182)
T cd06420 84 IFIDGDC-IPHPDFIADHIELA 104 (182)
T ss_pred EEEcCCc-ccCHHHHHHHHHHh
Confidence 9999998 66899999998876
|
Chondroitin polymerase is a two domain, bi-functional protein. The N-terminal domain functions as a GalNAc transferase. The bacterial chondroitin polymerase catalyzes elongation of the chondroitin chain by alternatively transferring the GlcUA and GalNAc moiety from UDP-GlcUA and UDP-GalNAc to the non-reducing ends of the chondroitin chain. The enzyme consists of N-terminal and C-terminal domains in which the two active sites catalyze the addition of GalNAc and GlcUA, respectively. Chondroitin chains range from 40 to over 100 repeating units of the disaccharide. Sulfated chondroitins are involved in the regulation of various biological functions such as central nervous system development, wound repair, infection, growth factor signaling, and morphogenesis, in addition to its conventional structural roles. In Caenorhabditis elegans, chondroitin is an essential factor for the worm |
| >cd04193 UDPGlcNAc_PPase UDPGlcNAc pyrophosphorylase catalayzes the synthesis of UDPGlcNAc | Back alignment and domain information |
|---|
Probab=91.19 E-value=0.26 Score=40.80 Aligned_cols=52 Identities=10% Similarity=0.126 Sum_probs=34.8
Q ss_pred CCCCCCceeeeeC---CeehHHHHHHHHhcCCCc----------CeEEEEeCCCchHHHHHHHHh
Q 028081 1 MGANMPKQYLPLL---GQPIALYSFYTFSRMVEV----------KEIVVVCDPSYSDIFEETKEK 52 (214)
Q Consensus 1 m~~~~~K~l~~l~---gkpli~~~i~~~~~~~~~----------~~iiVv~~~~~~~~~~~~~~~ 52 (214)
||...||.+++++ |||+++|.++.+++.... =.+++.|+...-+.+.+..++
T Consensus 29 Lg~~~PK~l~pv~~~~~k~ll~~~~e~l~~l~~~~~~~~~~~~~ip~~imtS~~t~~~t~~~~~~ 93 (323)
T cd04193 29 LGFDGPKGMFPVGLPSKKSLFQLQAERILKLQELAGEASGKKVPIPWYIMTSEATHEETRKFFKE 93 (323)
T ss_pred cCCCCCeEEEEecCCCCCcHHHHHHHHHHHHHHHHhhccCCCCCceEEEEcChhHhHHHHHHHHh
Confidence 4566799999998 799999999999874211 135566663322445555543
|
UDP-N-acetylglucosamine (UDPGlcNAc) pyrophosphorylase (UAP) (also named GlcNAc1P uridyltransferase), catalyzes the reversible conversion of UTP and GlcNAc1 to PPi and UDPGlcNAc. UDP-N-acetylglucosamine (UDPGlcNAc), the activated form of GlcNAc, is a key precursor of N- and O-linked glycosylations. It is essential for the synthesis of chitin (a major component of the fungal cell wall) and of the glycosylphosphatidylinositol (GPI) linker which anchors a variety of cell surface proteins to the plasma membrane. In bacteria, UDPGlcNAc represents an essential precursor for both peptidoglycan and lipopolysaccharide biosynthesis. Human UAP has two isoforms, resulting from alternative splicing of a single gene and differing by the presence or absence of 17 amino acids. UDPGlcNAc pyrophosphorylase shares significant sequence and structure conservation with UDPglucose pyrophosphorylase. |
| >cd02520 Glucosylceramide_synthase Glucosylceramide synthase catalyzes the first glycosylation step of glycosphingolipid synthesis | Back alignment and domain information |
|---|
Probab=90.94 E-value=5.4 Score=29.93 Aligned_cols=93 Identities=15% Similarity=0.183 Sum_probs=54.8
Q ss_pred CCeehHHHHHHHHhcCCC-cCeEEEEeCCCc---hHHHHHHHHhcC-CcEEEecC----Cc-cHHHHHHHHHhhcccCCC
Q 028081 13 LGQPIALYSFYTFSRMVE-VKEIVVVCDPSY---SDIFEETKEKIN-VDLKFSLP----GK-ERQDSVYSGLQEVDFNSE 82 (214)
Q Consensus 13 ~gkpli~~~i~~~~~~~~-~~~iiVv~~~~~---~~~~~~~~~~~~-~~~~~~~~----~~-~~~~sv~~al~~~~~~~~ 82 (214)
++.+-|..+++.+.+... --+|+||.+... .+.++++...+. ..+.++.. |. .....+..|++... .+
T Consensus 11 n~~~~l~~~L~sl~~q~~~~~eiivVdd~s~d~t~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~n~g~~~a~--~d 88 (196)
T cd02520 11 GVDPNLYENLESFFQQDYPKYEILFCVQDEDDPAIPVVRKLIAKYPNVDARLLIGGEKVGINPKVNNLIKGYEEAR--YD 88 (196)
T ss_pred CCCccHHHHHHHHHhccCCCeEEEEEeCCCcchHHHHHHHHHHHCCCCcEEEEecCCcCCCCHhHHHHHHHHHhCC--CC
Confidence 456678888988875321 146777665443 122333333333 23333311 11 12233445666554 78
Q ss_pred eEEEEcCCCCCCCHHHHHHHHHHHHh
Q 028081 83 LVCIHDSARPLVLSKDVQKVLMDALR 108 (214)
Q Consensus 83 ~vl~~~~d~P~v~~~~i~~~i~~~~~ 108 (214)
+++++|+|. .++++.+..+++.+..
T Consensus 89 ~i~~~D~D~-~~~~~~l~~l~~~~~~ 113 (196)
T cd02520 89 ILVISDSDI-SVPPDYLRRMVAPLMD 113 (196)
T ss_pred EEEEECCCc-eEChhHHHHHHHHhhC
Confidence 999999998 5699999999987643
|
UDP-glucose:N-acylsphingosine D-glucosyltransferase (glucosylceramide synthase or ceramide glucosyltransferase) catalyzes the first glycosylation step of glycosphingolipid synthesis. Its product, glucosylceramide, serves as the core of more than 300 glycosphingolipids (GSL). GSLs are a group of membrane components that have the lipid portion embedded in the outer plasma membrane leaflet and the sugar chains extended to the outer environment. Several lines of evidence suggest the importance of GSLs in various cellular processes such as differentiation, adhesion, proliferation, and cell-cell recognition. In pathogenic fungus Cryptococcus neoformans, glucosylceramide serves as an antigen that elicits an antibody response in patients and it is essential for fungal growth in host extracellular environment. |
| >PRK05454 glucosyltransferase MdoH; Provisional | Back alignment and domain information |
|---|
Probab=90.42 E-value=13 Score=34.36 Aligned_cols=100 Identities=6% Similarity=0.080 Sum_probs=59.9
Q ss_pred eeeeeCCeeh------HHHHHHHHhcCCCcC--eEEEEeCCCchH-------HHHHHHHhcC--CcEEEec---CCccHH
Q 028081 8 QYLPLLGQPI------ALYSFYTFSRMVEVK--EIVVVCDPSYSD-------IFEETKEKIN--VDLKFSL---PGKERQ 67 (214)
Q Consensus 8 ~l~~l~gkpl------i~~~i~~~~~~~~~~--~iiVv~~~~~~~-------~~~~~~~~~~--~~~~~~~---~~~~~~ 67 (214)
.+.|+.|.+. |+-+++.+...+.-+ +++|+.|..+-+ .+.+++++++ .++.+.. +.....
T Consensus 128 VliP~yNEd~~~v~~~L~a~~~Sl~~~~~~~~~e~~vLdD~~d~~~~~~e~~~~~~L~~~~~~~~~i~yr~R~~n~~~Ka 207 (691)
T PRK05454 128 ILMPIYNEDPARVFAGLRAMYESLAATGHGAHFDFFILSDTRDPDIAAAEEAAWLELRAELGGEGRIFYRRRRRNVGRKA 207 (691)
T ss_pred EEEeCCCCChHHHHHHHHHHHHHHHhcCCCCCEEEEEEECCCChhHHHHHHHHHHHHHHhcCCCCcEEEEECCcCCCccH
Confidence 4567777774 555565554433222 567776654311 1224445553 2344431 221224
Q ss_pred HHHHHHHhhcccCCCeEEEEcCCCCCCCHHHHHHHHHHHHh
Q 028081 68 DSVYSGLQEVDFNSELVCIHDSARPLVLSKDVQKVLMDALR 108 (214)
Q Consensus 68 ~sv~~al~~~~~~~~~vl~~~~d~P~v~~~~i~~~i~~~~~ 108 (214)
..+..+++.....+|+++++|+|. .++++.+.+++..+..
T Consensus 208 GNl~~~~~~~~~~~eyivvLDADs-~m~~d~L~~lv~~m~~ 247 (691)
T PRK05454 208 GNIADFCRRWGGAYDYMVVLDADS-LMSGDTLVRLVRLMEA 247 (691)
T ss_pred HHHHHHHHhcCCCcCEEEEEcCCC-CCCHHHHHHHHHHHhh
Confidence 456666666544579999999999 8899999999988764
|
|
| >PTZ00260 dolichyl-phosphate beta-glucosyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=90.32 E-value=4.1 Score=33.87 Aligned_cols=93 Identities=15% Similarity=0.098 Sum_probs=54.6
Q ss_pred CCeehHHHHHHHHhcC---------CCcCeEEEEeCCCc---hHHHHHHHHhc---CCcEEEec--CCccHHHHHHHHHh
Q 028081 13 LGQPIALYSFYTFSRM---------VEVKEIVVVCDPSY---SDIFEETKEKI---NVDLKFSL--PGKERQDSVYSGLQ 75 (214)
Q Consensus 13 ~gkpli~~~i~~~~~~---------~~~~~iiVv~~~~~---~~~~~~~~~~~---~~~~~~~~--~~~~~~~sv~~al~ 75 (214)
+..+-|..+++.+.+. ..--+|+||-+... .+.+++....+ +..+.++. ...+...++..|+.
T Consensus 80 Ne~~~i~~~L~~l~~~~~~~~~~~~~~~~EIIVVDDgStD~T~~i~~~~~~~~~~~~~~i~vi~~~~N~G~~~A~~~Gi~ 159 (333)
T PTZ00260 80 NEEDRLPKMLKETIKYLESRSRKDPKFKYEIIIVNDGSKDKTLKVAKDFWRQNINPNIDIRLLSLLRNKGKGGAVRIGML 159 (333)
T ss_pred CCHHHHHHHHHHHHHHHHhhhccCCCCCEEEEEEeCCCCCchHHHHHHHHHhcCCCCCcEEEEEcCCCCChHHHHHHHHH
Confidence 6667788887776531 11246777654322 12223333322 11244432 22244666778887
Q ss_pred hcccCCCeEEEEcCCCCCCCHHHHHHHHHHHHh
Q 028081 76 EVDFNSELVCIHDSARPLVLSKDVQKVLMDALR 108 (214)
Q Consensus 76 ~~~~~~~~vl~~~~d~P~v~~~~i~~~i~~~~~ 108 (214)
... .++++++|+|. ..+++.+.++++.+..
T Consensus 160 ~a~--gd~I~~~DaD~-~~~~~~l~~l~~~l~~ 189 (333)
T PTZ00260 160 ASR--GKYILMVDADG-ATDIDDFDKLEDIMLK 189 (333)
T ss_pred Hcc--CCEEEEEeCCC-CCCHHHHHHHHHHHHH
Confidence 654 68999999998 4578888888887653
|
|
| >PF13704 Glyco_tranf_2_4: Glycosyl transferase family 2 | Back alignment and domain information |
|---|
Probab=89.83 E-value=2.2 Score=28.14 Aligned_cols=81 Identities=20% Similarity=0.085 Sum_probs=45.9
Q ss_pred eehHHHHHHHHhcCCCcCeEEEEeCCCchHHHHHHHHhcC-CcEEEecCCc---cHHHHHHHHHhhcccCCCeEEEEcCC
Q 028081 15 QPIALYSFYTFSRMVEVKEIVVVCDPSYSDIFEETKEKIN-VDLKFSLPGK---ERQDSVYSGLQEVDFNSELVCIHDSA 90 (214)
Q Consensus 15 kpli~~~i~~~~~~~~~~~iiVv~~~~~~~~~~~~~~~~~-~~~~~~~~~~---~~~~sv~~al~~~~~~~~~vl~~~~d 90 (214)
-++|..-+.-.++.+ +++++|..+... +...+.++.+. ..+....... .+.....+++.......++++.+|+|
T Consensus 4 ~~~L~~wl~~~~~lG-~d~i~i~d~~s~-D~t~~~l~~~~~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~dWvl~~D~D 81 (97)
T PF13704_consen 4 ADYLPEWLAHHLALG-VDHIYIYDDGST-DGTREILRALPGVGIIRWVDPYRDERRQRAWRNALIERAFDADWVLFLDAD 81 (97)
T ss_pred HHHHHHHHHHHHHcC-CCEEEEEECCCC-ccHHHHHHhCCCcEEEEeCCCccchHHHHHHHHHHHHhCCCCCEEEEEeee
Confidence 356777777777664 899999877554 33455555543 2222222211 12333444443322257999999999
Q ss_pred CCCCCHH
Q 028081 91 RPLVLSK 97 (214)
Q Consensus 91 ~P~v~~~ 97 (214)
.=+..+.
T Consensus 82 Efl~~~~ 88 (97)
T PF13704_consen 82 EFLVPPP 88 (97)
T ss_pred EEEecCC
Confidence 8665443
|
|
| >TIGR01556 rhamnosyltran L-rhamnosyltransferase | Back alignment and domain information |
|---|
Probab=89.70 E-value=8.4 Score=30.78 Aligned_cols=90 Identities=9% Similarity=-0.039 Sum_probs=55.3
Q ss_pred ehHHHHHHHHhcCCCcCeEEEEeCCC-chHHHHHHHHhcCCcEEEecCC--ccHHHHHHHHHhhcc-cCCCeEEEEcCCC
Q 028081 16 PIALYSFYTFSRMVEVKEIVVVCDPS-YSDIFEETKEKINVDLKFSLPG--KERQDSVYSGLQEVD-FNSELVCIHDSAR 91 (214)
Q Consensus 16 pli~~~i~~~~~~~~~~~iiVv~~~~-~~~~~~~~~~~~~~~~~~~~~~--~~~~~sv~~al~~~~-~~~~~vl~~~~d~ 91 (214)
..|..+++++.+. ..+|+||=+.. ..+.++++...+ ..+.++..+ .+...+.-.|++.+. ...|+++++|.|.
T Consensus 8 ~~l~~~l~sl~~q--~~~iiVVDN~S~~~~~~~~~~~~~-~~i~~i~~~~N~G~a~a~N~Gi~~a~~~~~d~i~~lD~D~ 84 (281)
T TIGR01556 8 EHLGELITSLPKQ--VDRIIAVDNSPHSDQPLKNARLRG-QKIALIHLGDNQGIAGAQNQGLDASFRRGVQGVLLLDQDS 84 (281)
T ss_pred HHHHHHHHHHHhc--CCEEEEEECcCCCcHhHHHHhccC-CCeEEEECCCCcchHHHHHHHHHHHHHCCCCEEEEECCCC
Confidence 4677888888754 46777775542 112344433333 245554322 122444555665542 2479999999999
Q ss_pred CCCCHHHHHHHHHHHHhc
Q 028081 92 PLVLSKDVQKVLMDALRV 109 (214)
Q Consensus 92 P~v~~~~i~~~i~~~~~~ 109 (214)
.+.++.+..+++.+...
T Consensus 85 -~~~~~~l~~l~~~~~~~ 101 (281)
T TIGR01556 85 -RPGNAFLAAQWKLLSAE 101 (281)
T ss_pred -CCCHHHHHHHHHHHHhc
Confidence 55789999999887654
|
Rhamnolipids are glycolipids containing mono- or di- L-rhamnose molecules. Rhamnolipid synthesis occurs by sequential glycosyltransferase reactions involving two distinct rhamnosyltransferase enzymes. In P.aeruginosa, the synthesis of mono-rhamnolipids is catalyzed by rhamnosyltransferase 1, and proceeds by a glycosyltransfer reaction catalyzed by rhamnosyltransferase 2 to yield di-rhamnolipids. |
| >PF13641 Glyco_tranf_2_3: Glycosyltransferase like family 2; PDB: 4FIY_B 4FIX_A | Back alignment and domain information |
|---|
Probab=88.70 E-value=2.1 Score=32.79 Aligned_cols=95 Identities=12% Similarity=0.112 Sum_probs=53.2
Q ss_pred CCeehHHHHHHHHhcCCCc-CeEEEEeCCCc---hHHHHHHHHhcCC-cEEEecCCc-----cHHHHHHHHHhhcccCCC
Q 028081 13 LGQPIALYSFYTFSRMVEV-KEIVVVCDPSY---SDIFEETKEKINV-DLKFSLPGK-----ERQDSVYSGLQEVDFNSE 82 (214)
Q Consensus 13 ~gkpli~~~i~~~~~~~~~-~~iiVv~~~~~---~~~~~~~~~~~~~-~~~~~~~~~-----~~~~sv~~al~~~~~~~~ 82 (214)
+..+.|..+++++.+...- -+|+|+.+... .+.++++...++. .+.++.... +...++..|++... .+
T Consensus 11 ~~~~~l~~~l~sl~~~~~~~~~v~vvd~~~~~~~~~~~~~~~~~~~~~~v~vi~~~~~~g~~~k~~a~n~~~~~~~--~d 88 (228)
T PF13641_consen 11 NEDDVLRRCLESLLAQDYPRLEVVVVDDGSDDETAEILRALAARYPRVRVRVIRRPRNPGPGGKARALNEALAAAR--GD 88 (228)
T ss_dssp S-HHHHHHHHHHHTTSHHHTEEEEEEEE-SSS-GCTTHHHHHHTTGG-GEEEEE----HHHHHHHHHHHHHHHH-----S
T ss_pred CCHHHHHHHHHHHHcCCCCCeEEEEEECCCChHHHHHHHHHHHHcCCCceEEeecCCCCCcchHHHHHHHHHHhcC--CC
Confidence 3447888999998864211 34566554332 1234444445542 345443211 22455666777665 78
Q ss_pred eEEEEcCCCCCCCHHHHHHHHHHHHhcC
Q 028081 83 LVCIHDSARPLVLSKDVQKVLMDALRVG 110 (214)
Q Consensus 83 ~vl~~~~d~P~v~~~~i~~~i~~~~~~~ 110 (214)
+++++|+|. .++++.++.+++.+...+
T Consensus 89 ~i~~lD~D~-~~~p~~l~~~~~~~~~~~ 115 (228)
T PF13641_consen 89 YILFLDDDT-VLDPDWLERLLAAFADPG 115 (228)
T ss_dssp EEEEE-SSE-EE-CHHHHHHHHHHHBSS
T ss_pred EEEEECCCc-EECHHHHHHHHHHHHhCC
Confidence 999999998 559999999999884333
|
|
| >PRK10018 putative glycosyl transferase; Provisional | Back alignment and domain information |
|---|
Probab=86.37 E-value=15 Score=29.77 Aligned_cols=94 Identities=12% Similarity=0.048 Sum_probs=57.3
Q ss_pred eCCeehHHHHHHHHhcCCCc-CeEEEEeCCCc-hHHHHHHHHhcC-CcEEEecCC--ccHHHHHHHHHhhcccCCCeEEE
Q 028081 12 LLGQPIALYSFYTFSRMVEV-KEIVVVCDPSY-SDIFEETKEKIN-VDLKFSLPG--KERQDSVYSGLQEVDFNSELVCI 86 (214)
Q Consensus 12 l~gkpli~~~i~~~~~~~~~-~~iiVv~~~~~-~~~~~~~~~~~~-~~~~~~~~~--~~~~~sv~~al~~~~~~~~~vl~ 86 (214)
.+....|..+++.+.+...- -+|+||-+... .+.+.+.+..++ ..+.++... .+...+.-.|++... .+++++
T Consensus 14 yN~~~~l~~~l~Svl~Qt~~~~EiIVVDDgS~~~~~~~~~~~~~~~~ri~~i~~~~n~G~~~a~N~gi~~a~--g~~I~~ 91 (279)
T PRK10018 14 WNRQQLAIRAIKSVLRQDYSNWEMIIVDDCSTSWEQLQQYVTALNDPRITYIHNDINSGACAVRNQAIMLAQ--GEYITG 91 (279)
T ss_pred CCCHHHHHHHHHHHHhCCCCCeEEEEEECCCCCHHHHHHHHHHcCCCCEEEEECCCCCCHHHHHHHHHHHcC--CCEEEE
Confidence 36777888999988754321 26666644332 133455554432 345554332 222344445776654 789999
Q ss_pred EcCCCCCCCHHHHHHHHHHHHh
Q 028081 87 HDSARPLVLSKDVQKVLMDALR 108 (214)
Q Consensus 87 ~~~d~P~v~~~~i~~~i~~~~~ 108 (214)
+|+|- ...|+.+..+++.+..
T Consensus 92 lDaDD-~~~p~~l~~~~~~~~~ 112 (279)
T PRK10018 92 IDDDD-EWTPNRLSVFLAHKQQ 112 (279)
T ss_pred ECCCC-CCCccHHHHHHHHHHh
Confidence 99998 5568889988887654
|
|
| >cd02514 GT13_GLCNAC-TI GT13_GLCNAC-TI is involved in an essential step in the synthesis of complex or hybrid-type N-linked oligosaccharides | Back alignment and domain information |
|---|
Probab=86.20 E-value=19 Score=30.13 Aligned_cols=102 Identities=10% Similarity=-0.020 Sum_probs=57.6
Q ss_pred eeeeCCee-hHHHHHHHHhcCC-C--cCeEEEEeCCCchHHHHHHHHhcCCcEEEecC---Ccc------------H-HH
Q 028081 9 YLPLLGQP-IALYSFYTFSRMV-E--VKEIVVVCDPSYSDIFEETKEKINVDLKFSLP---GKE------------R-QD 68 (214)
Q Consensus 9 l~~l~gkp-li~~~i~~~~~~~-~--~~~iiVv~~~~~~~~~~~~~~~~~~~~~~~~~---~~~------------~-~~ 68 (214)
++...++| -+..+++++++.. . -.+|+|+.+... +...+.++.++..+..+.. +.. . ..
T Consensus 5 lv~ayNRp~~l~r~LesLl~~~p~~~~~~liIs~DG~~-~~~~~~v~~~~~~i~~i~~~~~~~~~~~~~~~~~~y~~ia~ 83 (334)
T cd02514 5 LVIACNRPDYLRRMLDSLLSYRPSAEKFPIIVSQDGGY-EEVADVAKSFGDGVTHIQHPPISIKNVNPPHKFQGYYRIAR 83 (334)
T ss_pred EEEecCCHHHHHHHHHHHHhccccCCCceEEEEeCCCc-hHHHHHHHhhccccEEEEcccccccccCcccccchhhHHHH
Confidence 45567778 6999999998752 1 256888876554 3345556555322222211 100 1 11
Q ss_pred HHHHHHhhccc--CCCeEEEEcCCCCCCCHHHHHHH---HHHHHhcCCe
Q 028081 69 SVYSGLQEVDF--NSELVCIHDSARPLVLSKDVQKV---LMDALRVGAA 112 (214)
Q Consensus 69 sv~~al~~~~~--~~~~vl~~~~d~P~v~~~~i~~~---i~~~~~~~~~ 112 (214)
....|+..+-. ..+.+++++.|. .++|+-+..+ ++.++....+
T Consensus 84 hyk~aln~vF~~~~~~~vIILEDDl-~~sPdFf~yf~~~l~~y~~D~~v 131 (334)
T cd02514 84 HYKWALTQTFNLFGYSFVIILEDDL-DIAPDFFSYFQATLPLLEEDPSL 131 (334)
T ss_pred HHHHHHHHHHHhcCCCEEEEECCCC-ccCHhHHHHHHHHHHHHhcCCCE
Confidence 12225544311 368999999999 8899866554 4444443333
|
Alpha-1,3-mannosyl-glycoprotein beta-1,2-N-acetylglucosaminyltransferase (GLCNAC-T I , GNT-I) transfers N-acetyl-D-glucosamine from UDP to high-mannose glycoprotein N-oligosaccharide, an essential step in the synthesis of complex or hybrid-type N-linked oligosaccharides. The enzyme is an integral membrane protein localized to the Golgi apparatus. The catalytic domain is located at the C-terminus. These proteins are members of the glycosy transferase family 13. |
| >cd04191 Glucan_BSP_ModH Glucan_BSP_ModH catalyzes the elongation of beta-1,2 polyglucose chains of glucan | Back alignment and domain information |
|---|
Probab=82.70 E-value=22 Score=28.25 Aligned_cols=99 Identities=7% Similarity=0.121 Sum_probs=56.8
Q ss_pred eeeeeCCeeh--HHHHHHHHhc-------CCCcCeEEEEeCCCchH-H------HHHHHHhcC--CcEEEec--CCccH-
Q 028081 8 QYLPLLGQPI--ALYSFYTFSR-------MVEVKEIVVVCDPSYSD-I------FEETKEKIN--VDLKFSL--PGKER- 66 (214)
Q Consensus 8 ~l~~l~gkpl--i~~~i~~~~~-------~~~~~~iiVv~~~~~~~-~------~~~~~~~~~--~~~~~~~--~~~~~- 66 (214)
.|.|+.|.+. +.-+++++.+ .+. =+|+|+-+..+-+ . +.+++..++ ..+.+.. ...+.
T Consensus 3 IliP~~ne~~~~l~~~l~~~~~~~~~~~~~~~-~eI~vldD~~d~~~~~~~~~~~~~l~~~~~~~~~v~~~~r~~~~g~K 81 (254)
T cd04191 3 IVMPVYNEDPARVFAGLRAMYESLAKTGLADH-FDFFILSDTRDPDIWLAEEAAWLDLCEELGAQGRIYYRRRRENTGRK 81 (254)
T ss_pred EEEeCCCCCHHHHHHHHHHHHHHHHhcCCcCc-eEEEEECCCCChHHHHHHHHHHHHHHHHhCCCCcEEEEEcCCCCCcc
Confidence 3678888774 5666666542 122 3666554433311 1 112333332 2344432 22222
Q ss_pred HHHHHHHHhhcccCCCeEEEEcCCCCCCCHHHHHHHHHHHHh
Q 028081 67 QDSVYSGLQEVDFNSELVCIHDSARPLVLSKDVQKVLMDALR 108 (214)
Q Consensus 67 ~~sv~~al~~~~~~~~~vl~~~~d~P~v~~~~i~~~i~~~~~ 108 (214)
.+.+..++......+++++++|+|. .+.|+.+.+++..+..
T Consensus 82 ag~l~~~~~~~~~~~~~i~~~DaD~-~~~p~~l~~~v~~~~~ 122 (254)
T cd04191 82 AGNIADFCRRWGSRYDYMVVLDADS-LMSGDTIVRLVRRMEA 122 (254)
T ss_pred HHHHHHHHHHhCCCCCEEEEEeCCC-CCCHHHHHHHHHHHHh
Confidence 4445556654323478999999999 8899999999998864
|
Periplasmic Glucan Biosynthesis protein ModH is a glucosyltransferase that catalyzes the elongation of beta-1,2 polyglucose chains of glucan, requiring a beta-glucoside as a primer and UDP-glucose as a substrate. Glucans are composed of 5 to 10 units of glucose forming a highly branched structure, where beta-1,2-linked glucose constitutes a linear backbone to which branches are attached by beta-1,6 linkages. In Escherichia coli, glucans are located in the periplasmic space, functioning as regulator of osmolarity. It is synthesized at a maximum when cells are grown in a medium with low osmolarity. It has been shown to span the cytoplasmic membrane. |
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 214 | ||||
| 1w77_A | 228 | 2c-methyl-d-erythritol 4-phosphate Cytidylyltransfe | 2e-98 | ||
| 2yc3_A | 228 | Inhibitors Of The Herbicidal Target Ispd Length = 2 | 3e-98 | ||
| 2ycm_A | 227 | Inhibitors Of Herbicidal Target Ispd Length = 227 | 4e-98 | ||
| 3n9w_A | 235 | Crystal Structure Of 2-C-Methyl-D-Erythritol 4-Phos | 6e-22 | ||
| 1i52_A | 236 | Crystal Structure Of 4-Diphosphocytidyl-2-C-Methyle | 6e-22 | ||
| 1h3m_A | 235 | Structure Of 4-Diphosphocytidyl-2c-Methyl-D-Erythri | 6e-22 | ||
| 1vgt_A | 238 | Crystal Structure Of 4-Diphosphocytidyl-2c-Methyl-D | 7e-22 | ||
| 2px7_A | 236 | Crystal Structure Of 2-C-Methyl-D-Erythritol 4-Phos | 9e-19 | ||
| 2xwl_A | 223 | Crystal Structure Of Ispd From Mycobacterium Smegma | 1e-18 | ||
| 1vgz_A | 241 | Crystal Structure Of 4-Diphosphocytidyl-2c-Methyl-D | 1e-16 | ||
| 1vgw_A | 231 | Crystal Structure Of 4-Diphosphocytidyl-2c-Methyl-D | 1e-16 | ||
| 1vpa_A | 234 | Crystal Structure Of 2-C-Methyl-D-Erythritol 4-Phos | 6e-16 | ||
| 2xwn_A | 233 | Crystal Structure Of Ispd From Mycobacterium Tuberc | 2e-13 | ||
| 3okr_A | 231 | Structure Of Mtb Apo 2-C-Methyl-D-Erythritol 4-Phos | 2e-13 | ||
| 3q7u_A | 231 | Structure Of Mtb 2-C-Methyl-D-Erythritol 4-Phosphat | 2e-13 | ||
| 3f1c_A | 246 | Crystal Structure Of 2-C-Methyl-D-Erythritol 4-Phos | 5e-13 | ||
| 2vsh_A | 236 | Synthesis Of Cdp-Activated Ribitol For Teichoic Aci | 1e-11 | ||
| 1w55_A | 371 | Structure Of The Bifunctional Ispdf From Campylobac | 4e-11 |
| >pdb|1W77|A Chain A, 2c-methyl-d-erythritol 4-phosphate Cytidylyltransferase (ispd) From Arabidopsis Thaliana Length = 228 | Back alignment and structure |
|
| >pdb|2YC3|A Chain A, Inhibitors Of The Herbicidal Target Ispd Length = 228 | Back alignment and structure |
|
| >pdb|2YCM|A Chain A, Inhibitors Of Herbicidal Target Ispd Length = 227 | Back alignment and structure |
|
| >pdb|3N9W|A Chain A, Crystal Structure Of 2-C-Methyl-D-Erythritol 4-Phosphate Cytidylyltransferase (Ispd) In Complex With 1,2-Propanediol Length = 235 | Back alignment and structure |
|
| >pdb|1I52|A Chain A, Crystal Structure Of 4-Diphosphocytidyl-2-C-Methylerythritol (Cdp-Me) Synthase (Ygbp) Involved In Mevalonate Independent Isoprenoid Biosynthesis Length = 236 | Back alignment and structure |
|
| >pdb|1H3M|A Chain A, Structure Of 4-Diphosphocytidyl-2c-Methyl-D-Erythritol Synthetase Length = 235 | Back alignment and structure |
|
| >pdb|1VGT|A Chain A, Crystal Structure Of 4-Diphosphocytidyl-2c-Methyl-D-Erythritol Synthase Length = 238 | Back alignment and structure |
|
| >pdb|2PX7|A Chain A, Crystal Structure Of 2-C-Methyl-D-Erythritol 4-Phosphate Cytidylyltransferase From Thermus Thermophilus Hb8 Length = 236 | Back alignment and structure |
|
| >pdb|2XWL|A Chain A, Crystal Structure Of Ispd From Mycobacterium Smegmatis In Complex With Ctp And Mg Length = 223 | Back alignment and structure |
|
| >pdb|1VGZ|A Chain A, Crystal Structure Of 4-Diphosphocytidyl-2c-Methyl-D-Erythritol Synthase Length = 241 | Back alignment and structure |
|
| >pdb|1VGW|A Chain A, Crystal Structure Of 4-Diphosphocytidyl-2c-Methyl-D-Erythritol Synthase Length = 231 | Back alignment and structure |
|
| >pdb|1VPA|A Chain A, Crystal Structure Of 2-C-Methyl-D-Erythritol 4-Phosphate Cytidylyltransferase (Tm1393) From Thermotoga Maritima At 2.67 A Resolution Length = 234 | Back alignment and structure |
|
| >pdb|2XWN|A Chain A, Crystal Structure Of Ispd From Mycobacterium Tuberculosis In Complex With Ctp And Mg Length = 233 | Back alignment and structure |
|
| >pdb|3OKR|A Chain A, Structure Of Mtb Apo 2-C-Methyl-D-Erythritol 4-Phosphate Cytidyltransferase (Ispd) Length = 231 | Back alignment and structure |
|
| >pdb|3Q7U|A Chain A, Structure Of Mtb 2-C-Methyl-D-Erythritol 4-Phosphate Cytidyltransferase (Ispd) Complexed With Ctp Length = 231 | Back alignment and structure |
|
| >pdb|3F1C|A Chain A, Crystal Structure Of 2-C-Methyl-D-Erythritol 4-Phosphate Cytidylyltransferase From Listeria Monocytogenes Length = 246 | Back alignment and structure |
|
| >pdb|2VSH|A Chain A, Synthesis Of Cdp-Activated Ribitol For Teichoic Acid Precursors In Streptococcus Pneumoniae Length = 236 | Back alignment and structure |
|
| >pdb|1W55|A Chain A, Structure Of The Bifunctional Ispdf From Campylobacter Jejuni Length = 371 | Back alignment and structure |
|
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >2yc3_A 2-C-methyl-D-erythritol 4-phosphate cytidylyltran chloroplastic; transferase, non-mevalonate-pathway, herbicide, allosteric P; HET: MW5; 1.40A {Arabidopsis thaliana} PDB: 2yc5_A* 1w77_A* 2ycm_A* Length = 228 | Back alignment and structure |
|---|
Score = 282 bits (725), Expect = 6e-98
Identities = 170/211 (80%), Positives = 191/211 (90%)
Query: 1 MGANMPKQYLPLLGQPIALYSFYTFSRMVEVKEIVVVCDPSYSDIFEETKEKINVDLKFS 60
M +MPKQY+PLLGQPIALYSF+TFSRM EVKEIVVVCDP + DIFEE +E I+VDL F+
Sbjct: 18 MKMSMPKQYIPLLGQPIALYSFFTFSRMPEVKEIVVVCDPFFRDIFEEYEESIDVDLSFA 77
Query: 61 LPGKERQDSVYSGLQEVDFNSELVCIHDSARPLVLSKDVQKVLMDALRVGAAVLGVPAKA 120
+PGKERQDSVYSGLQE+D NSELVCIHDSARPLV ++DV+KVL D VGAAVLGVPAKA
Sbjct: 78 IPGKERQDSVYSGLQEIDVNSELVCIHDSARPLVNTEDVEKVLKDGSAVGAAVLGVPAKA 137
Query: 121 TIKEANSESFVVRTLDRKTLWEMQTPQVIKPDLLKKGFELVNREGLEVTDDVSIVEHLKH 180
TIKE NS+S VV+TLDRKTLWEMQTPQVIKP+LLKKGFELV EGLEVTDDVSIVE+LKH
Sbjct: 138 TIKEVNSDSLVVKTLDRKTLWEMQTPQVIKPELLKKGFELVKSEGLEVTDDVSIVEYLKH 197
Query: 181 PVYITEGSYTNIKVTTPDDLLIAERILNLSS 211
PVY+++GSYTNIKVTTPDDLL+AERIL+ S
Sbjct: 198 PVYVSQGSYTNIKVTTPDDLLLAERILSEDS 228
|
| >1i52_A 4-diphosphocytidyl-2-C-methylerythritol synthase; cytidylyltransferase, deoxyxylulose-5-phosphate pathway (DXP isoprenoid biosynthesys, MEP; HET: CTP; 1.50A {Escherichia coli} SCOP: c.68.1.13 PDB: 1ini_A* 1inj_A 1vgt_A 1vgu_A 3n9w_A 1h3m_A Length = 236 | Back alignment and structure |
|---|
Score = 257 bits (660), Expect = 7e-88
Identities = 64/211 (30%), Positives = 98/211 (46%), Gaps = 6/211 (2%)
Query: 1 MGANMPKQYLPLLGQPIALYSFYTFSRMVEVKEIVVVCDPSYSDIFEETKEKINVDLKFS 60
M PKQYL + Q I +S + VK +V+ P S + + +
Sbjct: 21 MQTECPKQYLSIGNQTILEHSVHALLAHPRVKRVVIAISPGDSRFAQLPLAN-HPQITVV 79
Query: 61 LPGKERQDSVYSGLQEVDFNSELVCIHDSARPLVLSKDVQKVLMDALR--VGAAVLGVPA 118
G ER DSV +GL+ +++ V +HD+ARP + D+ ++L +L P
Sbjct: 80 DGGDERADSVLAGLKAAG-DAQWVLVHDAARPCLHQDDLARLL-ALSETSRTGGILAAPV 137
Query: 119 KATIKEAN-SESFVVRTLDRKTLWEMQTPQVIKPDLLKKGFELVNREGLEVTDDVSIVEH 177
+ T+K A ++ + T+DR LW TPQ +LL EG +TD+ S +E+
Sbjct: 138 RDTMKRAEPGKNAIAHTVDRNGLWHALTPQFFPRELLHDCLTRALNEGATITDEASALEY 197
Query: 178 LKHPVYITEGSYTNIKVTTPDDLLIAERILN 208
+ EG NIKVT P+DL +AE L
Sbjct: 198 CGFHPQLVEGRADNIKVTRPEDLALAEFYLT 228
|
| >2xwl_A 2-C-methyl-D-erythritol 4-phosphate cytidylyltran; transferase, MEP pathway; HET: CTP; 1.49A {Mycobacterium smegmatis} PDB: 2xwm_A* Length = 223 | Back alignment and structure |
|---|
Score = 254 bits (652), Expect = 9e-87
Identities = 63/210 (30%), Positives = 102/210 (48%), Gaps = 8/210 (3%)
Query: 1 MGANMPKQYLPLLGQPIALYSFYTFSRMVEVKEIVVVCDPSYSDIFEETKEKINVDLKFS 60
+ A PK ++ L G P+ ++ + IV+ P+ +D + +
Sbjct: 16 LRAGRPKAFVTLGGTPLLEHALSGLRASGVIDRIVIAVPPALTDESKLVFGGEDS--VIV 73
Query: 61 LPGKERQDSVYSGLQEVDFNSELVCIHDSARPLVLSKDVQKVLMDALR--VGAAVLGVPA 118
G +R +SV L+ ++E V +HD+AR L + +V+ AL+ A V G+
Sbjct: 74 SGGVDRTESVALALEAAG-DAEFVLVHDAARALTPPALIARVV-AALKEGHSAVVPGLAP 131
Query: 119 KATIKEANSESFVVRTLDRKTLWEMQTPQVIKPDLLKKGFELVNREGLEVTDDVSIVEHL 178
TIK ++ V+ T +R L +QTPQ D+L++ + G VTDD S+VE L
Sbjct: 132 ADTIKAVDANGAVLGTPERAGLRAVQTPQGFHADVLRRAYARATAGG--VTDDASLVEQL 189
Query: 179 KHPVYITEGSYTNIKVTTPDDLLIAERILN 208
PV I +G K+TTP DL++AE +L
Sbjct: 190 GTPVQIVDGDPLAFKITTPLDLVLAEAVLA 219
|
| >3f1c_A Putative 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase 2; structural genomics, PSI-2, protein structure initiative; 2.30A {Listeria monocytogenes str} Length = 246 | Back alignment and structure |
|---|
Score = 255 bits (653), Expect = 1e-86
Identities = 54/217 (24%), Positives = 107/217 (49%), Gaps = 9/217 (4%)
Query: 1 MG-ANMPKQYLPLLGQPIALYSFYTFSRMVEVKEIVVVCDPSYSDIFEETKEKINVD--L 57
MG +MPKQ+LPL G+PI +++ F +I++ + + E+ +K D +
Sbjct: 17 MGNVSMPKQFLPLNGKPIIVHTVEKFILNTRFDKILISSPKEWMNHAEDNIKKYISDDRI 76
Query: 58 KFSLPGKERQDSVYSGLQEVD-----FNSELVCIHDSARPLVLSKDVQKVLMDALRVGAA 112
G++R +++ +G++ V+ + +++ HD+ RP + + +++ + AL GA
Sbjct: 77 VVIEGGEDRNETIMNGIRFVEKTYGLTDDDIIVTHDAVRPFLTHRIIEENIDAALETGAV 136
Query: 113 VLGVPAKATIKEANSESFVVRTLDRKTLWEMQTPQVIKPDLLKKGFELVNREGLE-VTDD 171
+ A TI E+++ + R +++ QTPQ + ++ + E + +TD
Sbjct: 137 DTVIEALDTIVESSNHEVITDIPVRDHMYQGQTPQSFNMKKVFNHYQNLTPEKKQILTDA 196
Query: 172 VSIVEHLKHPVYITEGSYTNIKVTTPDDLLIAERILN 208
I V + +G NIK+TTP DL +A I+
Sbjct: 197 CKICLLAGDDVKLVKGEIFNIKITTPYDLKVANAIIQ 233
|
| >2px7_A 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase; TTHA0171, ISPD_THET8, ISPD, structural genomics PSI; 2.20A {Thermus thermophilus HB8} Length = 236 | Back alignment and structure |
|---|
Score = 253 bits (649), Expect = 3e-86
Identities = 65/211 (30%), Positives = 97/211 (45%), Gaps = 14/211 (6%)
Query: 1 MGANMPKQYLPLLGQPIALYSFYTFSRMVEVKEIVVVCDPSYSDIFEETKEKINVDLKFS 60
+G PK +L + G+ + ++ F + E++V P + F
Sbjct: 39 LGRG-PKAFLQVGGRTLLEWTLAAFR---DAAEVLVALPPGAEPPKG-------LGAVFL 87
Query: 61 LPGKERQDSVYSGLQEVDFNSELVCIHDSARPLVLSKDVQKVLMDALRVGAAVLGVPAKA 120
G RQ SV L+ LV +HD ARP V V +VL A R GAAV +P
Sbjct: 88 EGGATRQASVARLLEAAS--LPLVLVHDVARPFVSRGLVARVLEAAQRSGAAVPVLPVPD 145
Query: 121 TIKEANSESFVVRTLDRKTLWEMQTPQVIKPDLLKKGFELVNREGLEVTDDVSIVEHLKH 180
T+ E R + R+ +QTPQ LL++ R+GLE +DD +V+ L +
Sbjct: 146 TLMAPEGE-AYGRVVPREAFRLVQTPQGFFTALLREAHAYARRKGLEASDDAQLVQALGY 204
Query: 181 PVYITEGSYTNIKVTTPDDLLIAERILNLSS 211
PV + EG T K+T P DL++AE + + S
Sbjct: 205 PVALVEGEATAFKITHPQDLVLAEALARVWS 235
|
| >3q80_A 2-C-methyl-D-erythritol 4-phosphate cytidyltransf; TB structural genomics consortium, TBSGC, rossman fold; HET: CDM; 2.00A {Mycobacterium tuberculosis} PDB: 3q7u_A* 3okr_A 2xwn_A* Length = 231 | Back alignment and structure |
|---|
Score = 252 bits (647), Expect = 6e-86
Identities = 61/213 (28%), Positives = 97/213 (45%), Gaps = 10/213 (4%)
Query: 1 MGANMPKQYLPLLGQPIALYSFYTFSRMVEVKEIVVVCDPSYSDIFEETKEKINVDLKFS 60
+ +PK + L GQ + + V +VV +D ++ +
Sbjct: 21 LAVGVPKAFYQLDGQTLIERAVDGLLDSGVVDTVVVAVPADRTDEA---RQILGHRAMIV 77
Query: 61 LPGKERQDSVYSGLQEVD--FNSELVCIHDSARPLVLSKDVQKVLMDALR--VGAAVLGV 116
G R D+V L + E V +HD+AR L V +V+ +ALR A V +
Sbjct: 78 AGGSNRTDTVNLALTVLSGTAEPEFVLVHDAARALTPPALVARVV-EALRDGYAAVVPVL 136
Query: 117 PAKATIKEANSESFVVRTLDRKTLWEMQTPQVIKPDLLKKGFE--LVNREGLEVTDDVSI 174
P TIK ++ V+ T +R L +QTPQ DLL + ++ ++ E TDD S+
Sbjct: 137 PLSDTIKAVDANGVVLGTPERAGLRAVQTPQGFTTDLLLRSYQRGSLDLPAAEYTDDASL 196
Query: 175 VEHLKHPVYITEGSYTNIKVTTPDDLLIAERIL 207
VEH+ V + +G K+TT DLL+A+ I+
Sbjct: 197 VEHIGGQVQVVDGDPLAFKITTKLDLLLAQAIV 229
|
| >2vsh_A TARI, 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase; nucleotidyltransferase; HET: 1PE PG4 P6G; 2.00A {Streptococcus pneumoniae} PDB: 2vsi_A* Length = 236 | Back alignment and structure |
|---|
Score = 251 bits (643), Expect = 3e-85
Identities = 57/219 (26%), Positives = 103/219 (47%), Gaps = 11/219 (5%)
Query: 1 MG-ANMPKQYLPLLGQPIALYSFYTFSRMVEVKEIVVVCDPSYSDIFEETKEK----INV 55
MG +N+PKQ+L L +PI +++ F +++IVV + E+ +K
Sbjct: 16 MGISNLPKQFLELGDRPILIHTIEKFVLEPSIEKIVVGVHGDWVSHAEDLVDKYLPLYKE 75
Query: 56 DLKFSLPGKERQDSVYSGLQEVD-----FNSELVCIHDSARPLVLSKDVQKVLMDALRVG 110
+ + G +R S+ + ++ +D ++V HDS RP + + +Q + A
Sbjct: 76 RIIITKGGADRNTSIKNIIEAIDAYRPLTPEDIVVTHDSVRPFITLRMIQDNIQLAQNHD 135
Query: 111 AAVLGVPAKATIKEANSESFVVRTLDRKTLWEMQTPQVIKPDLLKKGFELVNREGLE-VT 169
A V A TI E+ + F+ +R L++ QTPQ + + ++ E E +T
Sbjct: 136 AVDTVVEAVDTIVESTNGQFITDIPNRAHLYQGQTPQTFRCKDFMDLYGSLSDEEKEILT 195
Query: 170 DDVSIVEHLKHPVYITEGSYTNIKVTTPDDLLIAERILN 208
D I V + +G Y+N+K+TT DL IA+ ++
Sbjct: 196 DACKIFVIKGKDVALAKGEYSNLKITTVTDLKIAKSMIE 234
|
| >1vpa_A 2-C-methyl-D-erythritol 4-phosphate cytidylyltran; TM1393, JCSG, joint center for structural GENO PSI, protein structure initiative; HET: CTP; 2.67A {Thermotoga maritima} SCOP: c.68.1.13 Length = 234 | Back alignment and structure |
|---|
Score = 244 bits (626), Expect = 1e-82
Identities = 62/209 (29%), Positives = 97/209 (46%), Gaps = 8/209 (3%)
Query: 1 MGANMPKQYLPLLGQPIALYSFYTFSRMVEVKEIVVVCDPSYSDIFEETKEKINVDLKFS 60
M N+PKQ+L + G+ + Y TF + + +V+V + ++ E+ V L
Sbjct: 27 MSENVPKQFLEIEGRMLFEYPLSTFLKSEAIDGVVIVTRREWFEVVEKRVFHEKV-LGIV 85
Query: 61 LPGKERQDSVYSGLQEV-DFNSELVCIHDSARPLVLSKDVQKVLMDALRVGAAVLGVPAK 119
G R SV S L+ + F+ V +HDSARP + K V +VL A GAA L +
Sbjct: 86 EGGDTRSQSVRSALEFLEKFSPSYVLVHDSARPFLRKKHVSEVLRRARETGAATLALKNS 145
Query: 120 ATIKEANSESFVVRTLDRKTLWEMQTPQVIKPDLLKKGFELVNREGLEVTDDVSIVEHLK 179
+ ++ + + RK ++ + TPQ ++LKK E G E DD V+ L
Sbjct: 146 DALVRVEND--RIEYIPRKGVYRILTPQAFSYEILKKAHE----NGGEWADDTEPVQKLG 199
Query: 180 HPVYITEGSYTNIKVTTPDDLLIAERILN 208
+ + EG KVT +DL +A I
Sbjct: 200 VKIALVEGDPLCFKVTFKEDLELARIIAR 228
|
| >1vgw_A 4-diphosphocytidyl-2C-methyl-D-erythritol synthas; structural genomics, transferase; 2.35A {Neisseria gonorrhoeae} SCOP: c.68.1.13 PDB: 1vgz_A Length = 231 | Back alignment and structure |
|---|
Score = 242 bits (619), Expect = 1e-81
Identities = 57/214 (26%), Positives = 102/214 (47%), Gaps = 10/214 (4%)
Query: 1 MGANMPKQYLPLLGQPIALYSFYTFSRMVEVKEIVVVCDPSYSDIFEETKEKINVDLKFS 60
GA+ PKQY+ + + + + F R V VVV P + ++ + +
Sbjct: 20 FGADKPKQYVEIGSKTVLEHVLGIFERHEAVDLTVVVVSPEDTF-ADKVQTAFPQVRVWK 78
Query: 61 LPGKERQDSVYSGLQEVD-----FNSELVCIHDSARPLVLSKDVQKVLMDALRVG-AAVL 114
G+ R ++V +G+ ++ ++ + +HD+AR + S+ + +++ A +L
Sbjct: 79 NGGQTRAETVRNGVAKLLETGLAAETDNILVHDAARCCLPSEALARLIEQAGNAAEGGIL 138
Query: 115 GVPAKATIKEANSESFVVRTLDRKTLWEMQTPQVIKPDLLKKGFELVNREGLEVTDDVSI 174
VP T+K A S + T+DR LW+ QTPQ+ + LL + N G +TD+ S
Sbjct: 139 AVPVADTLKRAES-GQISATVDRSGLWQAQTPQLFQAGLLHRALAAENLGG--ITDEASA 195
Query: 175 VEHLKHPVYITEGSYTNIKVTTPDDLLIAERILN 208
VE L + +G N+K+T P D I +L+
Sbjct: 196 VEKLGVRPLLIQGDARNLKLTQPQDAYIVRLLLD 229
|
| >1w55_A ISPD/ISPF bifunctional enzyme; biosynthetic pathway, isoprenoids, nonmevalonate, transferase; HET: C GPP; 2.3A {Campylobacter jejuni} SCOP: c.68.1.13 d.79.5.1 PDB: 1w57_A* Length = 371 | Back alignment and structure |
|---|
Score = 166 bits (422), Expect = 2e-50
Identities = 51/207 (24%), Positives = 84/207 (40%), Gaps = 18/207 (8%)
Query: 1 MGANMPKQYLPLLGQPIALYSFYTFSRMVEVKEIVVVCDPSYSDIFEETKEKINVDLKFS 60
+ KQ+L L P+ LY+ S K+IVV +K + +F
Sbjct: 17 FNTKVKKQFLRLGNDPLWLYATKNLSSFYPFKKIVVTSSN------ITYMKKFTKNYEFI 70
Query: 61 LPGKERQDSVYSGLQEVDFNSELVCIHDSARPLVLSKDVQKVLMDALRVGAAVLGVPAKA 120
G R +S+ L+ +D SE V + D AR LV +++ + + +
Sbjct: 71 EGGDTRAESLKKALELID--SEFVMVSDVARVLVSKNLFDRLIENLDKADCITPALKVAD 128
Query: 121 TIKEANSESFVVRTLDRKTLWEMQTPQVIKPDLLKKGFELVNREGLEVTDDVSIVEHLKH 180
T F L R+ + +QTPQ+ K LLKK + + LE TDD + + +
Sbjct: 129 TTL------FDNEALQREKIKLIQTPQISKTKLLKKALD----QNLEFTDDSTAIAAMGG 178
Query: 181 PVYITEGSYTNIKVTTPDDLLIAERIL 207
++ EG K+T +DL +
Sbjct: 179 KIWFVEGEENARKLTFKEDLKKLDLPT 205
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 41.4 bits (96), Expect = 1e-04
Identities = 33/218 (15%), Positives = 67/218 (30%), Gaps = 56/218 (25%)
Query: 30 EVKEIVVVCDPSYSDIFEETKEKINVDLKFSLPGKERQDSVYSGLQEVDFNSELVCIHDS 89
E E Y DI ++ + K+ QD S L + + + ++
Sbjct: 10 ETGEH----QYQYKDILSVFEDAFVDNFDC----KDVQDMPKSILSKEEIDHIIMSKDAV 61
Query: 90 ARPLVL--------SKDVQKVLMDALRVGAAVLGVPAKATIKE--ANSESFVVRTLDRKT 139
+ L L + VQK + + LR+ L P K ++ + + + DR
Sbjct: 62 SGTLRLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMY-IEQRDR-- 118
Query: 140 LWEMQTPQVIKPD---------LLKKG-FELVNREGL---------------EVTDDVSI 174
L+ QV L++ EL + + +V +
Sbjct: 119 LY--NDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKV 176
Query: 175 VEHLKHPVY-ITEGSYTNIKVTTPDDLLIAERILNLSS 211
+ ++ + +P+ +L E + L
Sbjct: 177 QCKMDFKIFWLNLK-----NCNSPETVL--EMLQKLLY 207
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 214 | |||
| 3q80_A | 231 | 2-C-methyl-D-erythritol 4-phosphate cytidyltransf; | 100.0 | |
| 3f1c_A | 246 | Putative 2-C-methyl-D-erythritol 4-phosphate cytid | 100.0 | |
| 2yc3_A | 228 | 2-C-methyl-D-erythritol 4-phosphate cytidylyltran | 100.0 | |
| 1vpa_A | 234 | 2-C-methyl-D-erythritol 4-phosphate cytidylyltran; | 100.0 | |
| 1i52_A | 236 | 4-diphosphocytidyl-2-C-methylerythritol synthase; | 99.98 | |
| 2vsh_A | 236 | TARI, 2-C-methyl-D-erythritol 4-phosphate cytidyly | 99.97 | |
| 2xwl_A | 223 | 2-C-methyl-D-erythritol 4-phosphate cytidylyltran; | 99.97 | |
| 1vgw_A | 231 | 4-diphosphocytidyl-2C-methyl-D-erythritol synthas; | 99.97 | |
| 2px7_A | 236 | 2-C-methyl-D-erythritol 4-phosphate cytidylyltrans | 99.96 | |
| 1w55_A | 371 | ISPD/ISPF bifunctional enzyme; biosynthetic pathwa | 99.95 | |
| 4fcu_A | 253 | 3-deoxy-manno-octulosonate cytidylyltransferase; s | 99.93 | |
| 3k8d_A | 264 | 3-deoxy-manno-octulosonate cytidylyltransferase; K | 99.93 | |
| 1h7e_A | 245 | 3-deoxy-manno-octulosonate cytidylyltransferase; n | 99.92 | |
| 1ezi_A | 228 | CMP-N-acetylneuraminic acid synthetase; homodimer, | 99.92 | |
| 3tqd_A | 256 | 3-deoxy-manno-octulosonate cytidylyltransferase; c | 99.91 | |
| 4fce_A | 459 | Bifunctional protein GLMU; GLMU. csgid, niaid, str | 99.91 | |
| 3oam_A | 252 | 3-deoxy-manno-octulosonate cytidylyltransferase; c | 99.9 | |
| 2v0h_A | 456 | Bifunctional protein GLMU; cell WALL, magnesium, c | 99.88 | |
| 2waw_A | 199 | MOBA relate protein; unknown function; HET: PGE; 1 | 99.88 | |
| 1hm9_A | 468 | GLMU, UDP-N-acetylglucosamine-1-phosphate uridyltr | 99.88 | |
| 1vic_A | 262 | 3-deoxy-manno-octulosonate cytidylyltransferase; s | 99.86 | |
| 2y6p_A | 234 | 3-deoxy-manno-octulosonate cytidylyltransferase; l | 99.86 | |
| 2wee_A | 197 | MOBA-related protein; unknown function; 1.65A {Myc | 99.85 | |
| 1qwj_A | 229 | Cytidine monophospho-N-acetylneuraminic acid synth | 99.85 | |
| 3rsb_A | 196 | Adenosylcobinamide-phosphate guanylyltransferase; | 99.84 | |
| 3d5n_A | 197 | Q97W15_sulso; NESG, SSR125, structural genomics, P | 99.82 | |
| 1lvw_A | 295 | Glucose-1-phosphate thymidylyltransferase; protein | 99.81 | |
| 4ecm_A | 269 | Glucose-1-phosphate thymidylyltransferase; HET: DA | 99.8 | |
| 3ngw_A | 208 | Molybdopterin-guanine dinucleotide biosynthesis P | 99.79 | |
| 1fxo_A | 293 | Glucose-1-phosphate thymidylyltransferase; rhamnos | 99.79 | |
| 3st8_A | 501 | Bifunctional protein GLMU; acetyltransferase, pyro | 99.75 | |
| 3juk_A | 281 | UDP-glucose pyrophosphorylase (GALU); transfer; HE | 99.75 | |
| 1mc3_A | 296 | Glucose-1-phosphate thymidylyltransferase; glucose | 99.74 | |
| 1e5k_A | 201 | Molybdopterin-guanine dinucleotide biosynthesis pr | 99.73 | |
| 3pnn_A | 303 | Conserved domain protein; structural genomics, PSI | 99.73 | |
| 2pa4_A | 323 | UTP-glucose-1-phosphate uridylyltransferase; phosp | 99.73 | |
| 2dpw_A | 232 | Hypothetical protein TTHA0179; transferase, struct | 99.72 | |
| 4evw_A | 255 | Nucleoside-diphosphate-sugar pyrophosphorylase; st | 99.69 | |
| 2ggo_A | 401 | 401AA long hypothetical glucose-1-phosphate thymid | 99.69 | |
| 2ux8_A | 297 | Glucose-1-phosphate uridylyltransferase; UGPG, GAL | 99.68 | |
| 1jyk_A | 254 | LICC protein, CTP:phosphocholine cytidylytransfera | 99.68 | |
| 2e8b_A | 201 | Probable molybdopterin-guanine dinucleotide biosy | 99.67 | |
| 2e3d_A | 302 | UTP--glucose-1-phosphate uridylyltransferase; UDP- | 99.65 | |
| 1tzf_A | 259 | Glucose-1-phosphate cytidylyltransferase; nucleoti | 99.62 | |
| 2qh5_A | 308 | PMI, ALGA, mannose-6-phosphate isomerase; structur | 99.61 | |
| 3brk_X | 420 | Glucose-1-phosphate adenylyltransferase; ADP-gluco | 99.58 | |
| 2xme_A | 232 | CTP-inositol-1-phosphate cytidylyltransferase; CDP | 99.58 | |
| 1yp2_A | 451 | Glucose-1-phosphate adenylyltransferase small subu | 99.51 | |
| 2x65_A | 336 | Mannose-1-phosphate guanylyltransferase; nucleotid | 99.48 | |
| 2cu2_A | 337 | Putative mannose-1-phosphate guanylyl transferase; | 99.38 | |
| 2i5e_A | 211 | Hypothetical protein MM_2497; APC86122, methanosar | 99.31 | |
| 3cgx_A | 242 | Putative nucleotide-diphospho-sugar transferase; Y | 98.93 | |
| 2i5k_A | 488 | UTP--glucose-1-phosphate uridylyltransferase; LEFT | 97.99 | |
| 2icy_A | 469 | Probable UTP-glucose-1-phosphate uridylyltransfera | 97.13 | |
| 1jv1_A | 505 | Glcnac1P uridyltransferase isoform 1: AGX1; nucleo | 97.09 | |
| 3oc9_A | 405 | UDP-N-acetylglucosamine pyrophosphorylase; structu | 96.33 | |
| 2oeg_A | 505 | UTP-glucose-1-phosphate uridylyltransferase 2, put | 95.83 | |
| 2yqc_A | 486 | UDP-N-acetylglucosamine pyrophosphorylase; uridine | 95.65 | |
| 1qg8_A | 255 | Protein (spore coat polysaccharide biosynthesis P | 95.29 | |
| 3bcv_A | 240 | Putative glycosyltransferase protein; protein stru | 94.93 | |
| 3ckj_A | 329 | Putative uncharacterized protein; mycobacteria, un | 94.63 | |
| 3f1y_A | 387 | Mannosyl-3-phosphoglycerate synthase; GT-A type gl | 93.77 | |
| 1xhb_A | 472 | Polypeptide N-acetylgalactosaminyltransferase 1; g | 92.58 | |
| 4fix_A | 657 | UDP-galactofuranosyl transferase GLFT2; CAZY GT-2 | 91.97 | |
| 4hg6_A | 802 | Cellulose synthase subunit A; membrane translocati | 91.39 | |
| 2ffu_A | 501 | Ppgalnact-2, polypeptide N-acetylgalactosaminyltra | 90.82 | |
| 2bo4_A | 397 | Mannosylglycerate synthase; catalysis, glycosyltra | 87.72 | |
| 2d7i_A | 570 | Polypeptide N-acetylgalactosaminyltransferase 10; | 87.18 | |
| 2z86_A | 625 | Chondroitin synthase; GT-A, glycosyltransferase A, | 86.78 | |
| 2z86_A | 625 | Chondroitin synthase; GT-A, glycosyltransferase A, | 85.21 |
| >3q80_A 2-C-methyl-D-erythritol 4-phosphate cytidyltransf; TB structural genomics consortium, TBSGC, rossman fold; HET: CDM; 2.00A {Mycobacterium tuberculosis} SCOP: c.68.1.0 PDB: 3q7u_A* 3okr_A 2xwn_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=4e-43 Score=274.60 Aligned_cols=205 Identities=28% Similarity=0.350 Sum_probs=180.4
Q ss_pred CCCCCCceeeeeCCeehHHHHHHHHhcCCCcCeEEEEeCCCchHHHHHHHHhcCCcEEEecCCccHHHHHHHHHhhcccC
Q 028081 1 MGANMPKQYLPLLGQPIALYSFYTFSRMVEVKEIVVVCDPSYSDIFEETKEKINVDLKFSLPGKERQDSVYSGLQEVDFN 80 (214)
Q Consensus 1 m~~~~~K~l~~l~gkpli~~~i~~~~~~~~~~~iiVv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sv~~al~~~~~~ 80 (214)
||++.||+|++++|||||.|+++++.+++.+++|+||+++++++.+++.+.. .+.++.||.++++|+++|+.++...
T Consensus 21 mg~~~~K~l~~l~Gkpll~~~l~~~~~~~~~~~ivVv~~~~~~~~~~~~~~~---~v~~v~gg~~r~~sv~~gl~~~~~~ 97 (231)
T 3q80_A 21 LAVGVPKAFYQLDGQTLIERAVDGLLDSGVVDTVVVAVPADRTDEARQILGH---RAMIVAGGSNRTDTVNLALTVLSGT 97 (231)
T ss_dssp TCSSSCGGGCEETTEEHHHHHHHHHHHTSCCCEEEEEECGGGHHHHHHHHGG---GCEEEECCSSHHHHHHHHHGGGC--
T ss_pred CCCCCCceEEEECCeEHHHHHHHHHHhCCCCCeEEEECChHHHHHHHHHhcC---CeEEEcCCCchHHHHHHHHHHhhhc
Confidence 7777899999999999999999999988778999999998875556555443 4567778889999999999998642
Q ss_pred --CCeEEEEcCCCCCCCHHHHHHHHHHHHh-cCCeEEeeeccccEEEecCCCceeeecCccchhhhcCCcccChHHHHHH
Q 028081 81 --SELVCIHDSARPLVLSKDVQKVLMDALR-VGAAVLGVPAKATIKEANSESFVVRTLDRKTLWEMQTPQVIKPDLLKKG 157 (214)
Q Consensus 81 --~~~vl~~~~d~P~v~~~~i~~~i~~~~~-~~~~i~~~~~~~~~~~~~~~g~v~~~~~r~~~~~~~~p~~f~~~~l~~~ 157 (214)
.++|++|+||+||+++++|+++++.+.+ +++++++.|+.|++++++++|.+.++++|+.+|++||||+|+.+.|.++
T Consensus 98 ~~~d~Vlv~~~d~Pli~~~~i~~li~~~~~~~~~~i~~~p~~dt~~~~~~~g~v~~~~~r~~l~~~qTPq~F~~~~L~~a 177 (231)
T 3q80_A 98 AEPEFVLVHDAARALTPPALVARVVEALRDGYAAVVPVLPLSDTIKAVDANGVVLGTPERAGLRAVQTPQGFTTDLLLRS 177 (231)
T ss_dssp -CCSEEEECCTTCTTCCHHHHHHHHHHHHTTCSEEEEEECCSSCEEEECTTSBEEECCCGGGEEEECSCEEEEHHHHHHH
T ss_pred CCCCEEEEEcCCcCCCCHHHHHHHHHHHhhcCCeEEEEEeccCCEEEEcCCCcEEEecchhheEEEcCCcEEEHHHHHHH
Confidence 5899999999999999999999999877 6889999999999998876788999999999999999999999999999
Q ss_pred HHHHHh--cCCCCCcHHHHHHhCCCCeEEEecCCCCcccCCHHHHHHHHHHhh
Q 028081 158 FELVNR--EGLEVTDDVSIVEHLKHPVYITEGSYTNIKVTTPDDLLIAERILN 208 (214)
Q Consensus 158 ~~~~~~--~~~~~~d~~~~~~~~g~~i~~v~~~~~~~~Idtp~Dl~~a~~~~~ 208 (214)
+....+ +++++||+.++++..|.+|.+++++..++|||||+||..|+++++
T Consensus 178 ~~~~~~~n~~~~~TD~~~~~~~~g~~v~~v~g~~~n~kIt~p~Dl~~ae~~l~ 230 (231)
T 3q80_A 178 YQRGSLDLPAAEYTDDASLVEHIGGQVQVVDGDPLAFKITTKLDLLLAQAIVR 230 (231)
T ss_dssp HHHHTC-----CCSSSHHHHHHTTCCCEEEECCGGGCCCCSHHHHHHHHHHHH
T ss_pred HHHHHhhcCCCCCCcHHHHHHHcCCcEEEEECCccccCcCCHHHHHHHHHHhc
Confidence 987654 358899999999999999999999999999999999999999985
|
| >3f1c_A Putative 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase 2; structural genomics, PSI-2, protein structure initiative; 2.30A {Listeria monocytogenes str} SCOP: c.68.1.0 | Back alignment and structure |
|---|
Probab=100.00 E-value=9.1e-39 Score=252.64 Aligned_cols=213 Identities=24% Similarity=0.378 Sum_probs=183.7
Q ss_pred CCC-CCCceeeeeCCeehHHHHHHHHhcCCCcCeEEEEeCCCchHHHHHHHHhcC--CcEEEecCCccHHHHHHHHHhhc
Q 028081 1 MGA-NMPKQYLPLLGQPIALYSFYTFSRMVEVKEIVVVCDPSYSDIFEETKEKIN--VDLKFSLPGKERQDSVYSGLQEV 77 (214)
Q Consensus 1 m~~-~~~K~l~~l~gkpli~~~i~~~~~~~~~~~iiVv~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~sv~~al~~~ 77 (214)
||+ +.||+|++++|||||.|+++++.+++.+++|+|++++++.+.+++.+..++ ..+.++.++.++.+|+++|+..+
T Consensus 17 m~~~~~pK~l~~l~Gkpll~~~l~~~~~~~~~~~ivvv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sv~~al~~l 96 (246)
T 3f1c_A 17 MGNVSMPKQFLPLNGKPIIVHTVEKFILNTRFDKILISSPKEWMNHAEDNIKKYISDDRIVVIEGGEDRNETIMNGIRFV 96 (246)
T ss_dssp C-CSSCCGGGSEETTEEHHHHHHHHHHTCTTCSEEEEEECGGGHHHHHHHHHHHCCCTTEEEEECCSSHHHHHHHHHHHH
T ss_pred cCCCCCCCeEEEECCeeHHHHHHHHHHcCCCCCEEEEEeCHHHHHHHHHHHHHhCCCCCEEEECCCCchHHHHHHHHHHH
Confidence 666 779999999999999999999998877899999999886555666666654 24667778889999999999988
Q ss_pred cc-----CCCeEEEEcCCCCCCCHHHHHHHHHHHHhcCCeEEeeeccccEEEecCCCceeeecCccchhhhcCCcccChH
Q 028081 78 DF-----NSELVCIHDSARPLVLSKDVQKVLMDALRVGAAVLGVPAKATIKEANSESFVVRTLDRKTLWEMQTPQVIKPD 152 (214)
Q Consensus 78 ~~-----~~~~vl~~~~d~P~v~~~~i~~~i~~~~~~~~~i~~~~~~~~~~~~~~~g~v~~~~~r~~~~~~~~p~~f~~~ 152 (214)
.. +.++|++++||+||+++++|+++++.+..+++++++.|+.|++++.+++|.+..+.+|+.++..||||+|+.+
T Consensus 97 ~~~~~~~~~~~vlv~~~d~Pli~~~~i~~li~~~~~~~a~i~~~~~~d~i~~~~~~~~v~~~~~r~~l~~~qtpq~f~~~ 176 (246)
T 3f1c_A 97 EKTYGLTDDDIIVTHDAVRPFLTHRIIEENIDAALETGAVDTVIEALDTIVESSNHEVITDIPVRDHMYQGQTPQSFNMK 176 (246)
T ss_dssp HHHTCCCTTCEEEEEETTCTTCCHHHHHHHHHHHHHTSEEEEEEECSSCEEECSSSSBCCBCCCGGGEEEEEEEEEEEHH
T ss_pred hhhhcCCCCCEEEEecCcccCCCHHHHHHHHHHHHhcCCEEEEEeccceEEEecCCCeEEEecChHHhhhhcCCceeEHH
Confidence 53 2589999999999999999999999988888889999999998887666777788899999999999999999
Q ss_pred HHHHHHHHH-HhcCCCCCcHHHHHHhCCCCeEEEecCCCCcccCCHHHHHHHHHHhhcccCC
Q 028081 153 LLKKGFELV-NREGLEVTDDVSIVEHLKHPVYITEGSYTNIKVTTPDDLLIAERILNLSSES 213 (214)
Q Consensus 153 ~l~~~~~~~-~~~~~~~~d~~~~~~~~g~~i~~v~~~~~~~~Idtp~Dl~~a~~~~~~~~~~ 213 (214)
.|.+++... .++++++||+..+++..|.+|..++++..++|||||+||..|+++++.++.+
T Consensus 177 ~L~~a~~~~~~~~~~~~TD~~~~~~~~g~~v~~v~~~~~~~~Itt~~Dl~~ae~~l~~~~~~ 238 (246)
T 3f1c_A 177 KVFNHYQNLTPEKKQILTDACKICLLAGDDVKLVKGEIFNIKITTPYDLKVANAIIQERIAN 238 (246)
T ss_dssp HHHHHHHTSCHHHHHHCCCHHHHHHHTTCCCEEEECCTTCCCCCSHHHHHHHHHHHHHHC--
T ss_pred HHHHHHHHHHHcCCCccCcHHHHHHHcCCCEEEEeCCCCccCcCCHHHHHHHHHHHhccccc
Confidence 999988765 2334789999999999999999999999999999999999999999988754
|
| >2yc3_A 2-C-methyl-D-erythritol 4-phosphate cytidylyltran chloroplastic; transferase, non-mevalonate-pathway, herbicide, allosteric P; HET: MW5; 1.40A {Arabidopsis thaliana} PDB: 2yc5_A* 1w77_A* 2ycm_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=6.6e-34 Score=222.04 Aligned_cols=210 Identities=80% Similarity=1.211 Sum_probs=165.5
Q ss_pred CCCCCCceeeeeCCeehHHHHHHHHhcCCCcCeEEEEeCCCchHHHHHHHHhcCCcEEEecCCccHHHHHHHHHhhcccC
Q 028081 1 MGANMPKQYLPLLGQPIALYSFYTFSRMVEVKEIVVVCDPSYSDIFEETKEKINVDLKFSLPGKERQDSVYSGLQEVDFN 80 (214)
Q Consensus 1 m~~~~~K~l~~l~gkpli~~~i~~~~~~~~~~~iiVv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sv~~al~~~~~~ 80 (214)
||++.||+|++++|||||+|+++++.+++.+++|+|+++++..+....+...++.++.++.++.++.+|+++|+..+..+
T Consensus 18 ~~~~~~K~l~~i~g~pli~~~l~~l~~~~~~~~ivvv~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~sv~~al~~~~~~ 97 (228)
T 2yc3_A 18 MKMSMPKQYIPLLGQPIALYSFFTFSRMPEVKEIVVVCDPFFRDIFEEYEESIDVDLSFAIPGKERQDSVYSGLQEIDVN 97 (228)
T ss_dssp -----CGGGSEETTEEHHHHHHHHHHHCTTEEEEEEECCGGGHHHHHTTTTTSSSEEEEECCCSSHHHHHHHHHTTSCTT
T ss_pred cCCCCCccEeEECCEEHHHHHHHHHHcCCCCCeEEEEEChHHHHHHHHHHHhCCCcEEEECCCCCHHHHHHHHHHhhccC
Confidence 45557999999999999999999999886689999999987522222222334445666666678899999999988644
Q ss_pred CCeEEEEcCCCCCCCHHHHHHHHHHHHhcCCeEEeeeccccEEEecCCCceeeecCccchhhhcCCcccChHHHHHHHHH
Q 028081 81 SELVCIHDSARPLVLSKDVQKVLMDALRVGAAVLGVPAKATIKEANSESFVVRTLDRKTLWEMQTPQVIKPDLLKKGFEL 160 (214)
Q Consensus 81 ~~~vl~~~~d~P~v~~~~i~~~i~~~~~~~~~i~~~~~~~~~~~~~~~g~v~~~~~r~~~~~~~~p~~f~~~~l~~~~~~ 160 (214)
.+.+++++||+||+++++++++++.+...++++++.+..++++.++++|.+.++++++.++..++|+.|+++.|.+++..
T Consensus 98 ~~~vl~~d~d~P~~~~~~i~~l~~~~~~~~~~i~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~f~~~~l~~~~~~ 177 (228)
T 2yc3_A 98 SELVCIHDSARPLVNTEDVEKVLKDGSAVGAAVLGVPAKATIKEVNSDSLVVKTLDRKTLWEMQTPQVIKPELLKKGFEL 177 (228)
T ss_dssp CSEEEEEETTCTTCCHHHHHHHHHHHHHHSEEEEEEECCSCCCCBCTTSCBCCCCSCCCCEEEEEEEEECHHHHHHHHHH
T ss_pred CCEEEEecCCCccCCHHHHHHHHHHHHhcCceEEEEeccceEEEEcCCCceEEecCccceEEEeCCcEEEHHHHHHHHHH
Confidence 57899999999999999999999988766666777887777655554556666677888888899999999888888765
Q ss_pred HHhcCCCCCcHHHHHHhCCCCeEEEecCCCCcccCCHHHHHHHHHHhhcc
Q 028081 161 VNREGLEVTDDVSIVEHLKHPVYITEGSYTNIKVTTPDDLLIAERILNLS 210 (214)
Q Consensus 161 ~~~~~~~~~d~~~~~~~~g~~i~~v~~~~~~~~Idtp~Dl~~a~~~~~~~ 210 (214)
....++|+++...++.+.|.++..++++..++|||||+||..++.+++.+
T Consensus 178 ~~~~~~~~~~~~~~l~~~g~~v~~~~~~~~~~dIdtpeDl~~a~~~l~~~ 227 (228)
T 2yc3_A 178 VKSEGLEVTDDVSIVEYLKHPVYVSQGSYTNIKVTTPDDLLLAERILSED 227 (228)
T ss_dssp HHHHTCCCCSTTHHHHHSSSCCEEEECCTTCCCCCSHHHHHHHHHHHTC-
T ss_pred HHhcCCCcccHHHHHHHcCCceEEEeCCccccCcCCHHHHHHHHHHHhhc
Confidence 54456889998888888899998888877899999999999999998754
|
| >1vpa_A 2-C-methyl-D-erythritol 4-phosphate cytidylyltran; TM1393, JCSG, joint center for structural GENO PSI, protein structure initiative; HET: CTP; 2.67A {Thermotoga maritima} SCOP: c.68.1.13 | Back alignment and structure |
|---|
Probab=100.00 E-value=1.4e-32 Score=215.23 Aligned_cols=205 Identities=29% Similarity=0.402 Sum_probs=164.0
Q ss_pred CCCCCCceeeeeCCeehHHHHHHHHhcCCCcCeEEEEeCCCchHHHHHHHHhcCCcEEEecCCccHHHHHHHHHhhccc-
Q 028081 1 MGANMPKQYLPLLGQPIALYSFYTFSRMVEVKEIVVVCDPSYSDIFEETKEKINVDLKFSLPGKERQDSVYSGLQEVDF- 79 (214)
Q Consensus 1 m~~~~~K~l~~l~gkpli~~~i~~~~~~~~~~~iiVv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sv~~al~~~~~- 79 (214)
||++.||+|++++|||||+|+++++++++.+++|+|+++++..+.+++.+. ++.++.+..||+++.+|+++|+..+..
T Consensus 27 m~~~~~K~l~~i~Gkpli~~~i~~l~~~~~~~~ivVv~~~~~~~~~~~~~~-~~~~~~~~~gg~~~~~sv~~al~~~~~~ 105 (234)
T 1vpa_A 27 MSENVPKQFLEIEGRMLFEYPLSTFLKSEAIDGVVIVTRREWFEVVEKRVF-HEKVLGIVEGGDTRSQSVRSALEFLEKF 105 (234)
T ss_dssp GCCSSCGGGCEETTEETTHHHHHHHHHCTTCSEEEEEECGGGHHHHHTTCC-CTTEEEEEECCSSHHHHHHHHHHHHGGG
T ss_pred cCCCCCceEEEECCeEHHHHHHHHHHcCCCCCeEEEEEChHHHHHHHHHhc-cCCceEEeCCCCcHHHHHHHHHHHhhhc
Confidence 555669999999999999999999998876899999999875333333322 233456777888899999999988753
Q ss_pred CCCeEEEEcCCCCCCCHHHHHHHHHHHHhcCCeEEeeeccccEEEecCCCceeeecCccchhhhcCCcccChHHHHHHHH
Q 028081 80 NSELVCIHDSARPLVLSKDVQKVLMDALRVGAAVLGVPAKATIKEANSESFVVRTLDRKTLWEMQTPQVIKPDLLKKGFE 159 (214)
Q Consensus 80 ~~~~vl~~~~d~P~v~~~~i~~~i~~~~~~~~~i~~~~~~~~~~~~~~~g~v~~~~~r~~~~~~~~p~~f~~~~l~~~~~ 159 (214)
+.+++++++||+||+++++|+++++.+...++++++.+..++++.++.+| + .+++|+.++..++|+.|+++.+.+++.
T Consensus 106 ~~~~vlv~~~D~Pli~~~~i~~l~~~~~~~~~~i~~~~~~~~~~~~~~~g-v-~~~~r~~~~~~~~p~~f~~~~l~~~~~ 183 (234)
T 1vpa_A 106 SPSYVLVHDSARPFLRKKHVSEVLRRARETGAATLALKNSDALVRVENDR-I-EYIPRKGVYRILTPQAFSYEILKKAHE 183 (234)
T ss_dssp CCSEEEEEETTSCCCCHHHHHHHHHHHHHHSEEEEEEECCSEEEEEETTE-E-EEECCTTEEEEEEEEEEEHHHHHHHHT
T ss_pred CCCEEEEecCcccCCCHHHHHHHHHHHHhcCCEEEEEecCCcEEEECCCC-c-ccCChhHeeeecCCccccHHHHHHHHH
Confidence 35789999999999999999999998766566666788888766655456 7 778888888889999999988877654
Q ss_pred HHHhcCCCCCcHHHHHHhCCCCeEEEecCCCCcccCCHHHHHHHHHHhhcccC
Q 028081 160 LVNREGLEVTDDVSIVEHLKHPVYITEGSYTNIKVTTPDDLLIAERILNLSSE 212 (214)
Q Consensus 160 ~~~~~~~~~~d~~~~~~~~g~~i~~v~~~~~~~~Idtp~Dl~~a~~~~~~~~~ 212 (214)
. +++.++...+++..|.++..++.+..++|||||+||+.++.+++.+.+
T Consensus 184 ~----~~~~~~~~~~~~~~g~~v~~v~~~~~~~dIdtpeDl~~a~~~l~~~~~ 232 (234)
T 1vpa_A 184 N----GGEWADDTEPVQKLGVKIALVEGDPLCFKVTFKEDLELARIIAREWER 232 (234)
T ss_dssp T----CCCCSSSHHHHHTTTCCCEEEECCGGGCCCCSTTHHHHHHHHHHHHC-
T ss_pred h----cCCCCcHHHHHHHcCCcEEEEECCchhcCCCCHHHHHHHHHHHhcccc
Confidence 3 245777777888888888888877679999999999999999987754
|
| >1i52_A 4-diphosphocytidyl-2-C-methylerythritol synthase; cytidylyltransferase, deoxyxylulose-5-phosphate pathway (DXP isoprenoid biosynthesys, MEP; HET: CTP; 1.50A {Escherichia coli} SCOP: c.68.1.13 PDB: 1ini_A* 1inj_A 1vgt_A 1vgu_A 3n9w_A 1h3m_A | Back alignment and structure |
|---|
Probab=99.98 E-value=2.7e-31 Score=208.32 Aligned_cols=209 Identities=31% Similarity=0.450 Sum_probs=165.0
Q ss_pred CCCCCCceeeeeCCeehHHHHHHHHhcCCCcCeEEEEeCCCchHHHHHHHHhcCC-cEEEecCCccHHHHHHHHHhhccc
Q 028081 1 MGANMPKQYLPLLGQPIALYSFYTFSRMVEVKEIVVVCDPSYSDIFEETKEKINV-DLKFSLPGKERQDSVYSGLQEVDF 79 (214)
Q Consensus 1 m~~~~~K~l~~l~gkpli~~~i~~~~~~~~~~~iiVv~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~sv~~al~~~~~ 79 (214)
||++.||+|++++|||||+|+++++.+++.+++|+|+++++. +.+.+ +..++. .+.++.++.++.+|+++|+..+.
T Consensus 21 ~~~~~~K~l~~i~g~pll~~~i~~l~~~~~~~~ivvv~~~~~-~~~~~-~~~~~~~~v~~~~~~~g~~~~i~~al~~~~- 97 (236)
T 1i52_A 21 MQTECPKQYLSIGNQTILEHSVHALLAHPRVKRVVIAISPGD-SRFAQ-LPLANHPQITVVDGGDERADSVLAGLKAAG- 97 (236)
T ss_dssp GCCSSCGGGSEETTEEHHHHHHHHHHTSTTEEEEEEEECTTC-CSGGG-SGGGGCTTEEEEECCSSHHHHHHHHHHTST-
T ss_pred cCCCCCcceeeECCEEHHHHHHHHHHhCCCCCeEEEEeCccH-HHHHH-HHhcCCCCEEEECCCCCHHHHHHHHHHhcC-
Confidence 454579999999999999999999998866899999998653 22333 334432 45556566778999999998884
Q ss_pred CCCeEEEEcCCCCCCCHHHHHHHHHHHHhcC-CeEEeeeccccEEEecCC-CceeeecCccchhhhcCCcccChHHHHHH
Q 028081 80 NSELVCIHDSARPLVLSKDVQKVLMDALRVG-AAVLGVPAKATIKEANSE-SFVVRTLDRKTLWEMQTPQVIKPDLLKKG 157 (214)
Q Consensus 80 ~~~~vl~~~~d~P~v~~~~i~~~i~~~~~~~-~~i~~~~~~~~~~~~~~~-g~v~~~~~r~~~~~~~~p~~f~~~~l~~~ 157 (214)
+.+.+++++||+||+++++++++++.+...+ .++++.+..++++.++++ |.+..++++..+|..|+|+.|+++.+.++
T Consensus 98 ~~~~~lv~~~D~P~~~~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~i~~~~~p~~f~~~~l~~~ 177 (236)
T 1i52_A 98 DAQWVLVHDAARPCLHQDDLARLLALSETSRTGGILAAPVRDTMKRAEPGKNAIAHTVDRNGLWHALTPQFFPRELLHDC 177 (236)
T ss_dssp TCSEEEECCTTCTTCCHHHHHHHHGGGGTCSSCEEEEEECCSCEEEECTTSSSEEEEECCTTCEEEEEEEEEEHHHHHHH
T ss_pred CCCEEEEEcCccccCCHHHHHHHHHHHHhcCCeEEEEEeccccEEEEcCCCCceeeccChHhheeeeCCceecHHHHHHH
Confidence 3578999999999999999999998776554 456677887775555444 56767778888999999999999888888
Q ss_pred HHHHHhcCCCCCcHHHHHHhCCCCeEEEecCCCCcccCCHHHHHHHHHHhhcccC
Q 028081 158 FELVNREGLEVTDDVSIVEHLKHPVYITEGSYTNIKVTTPDDLLIAERILNLSSE 212 (214)
Q Consensus 158 ~~~~~~~~~~~~d~~~~~~~~g~~i~~v~~~~~~~~Idtp~Dl~~a~~~~~~~~~ 212 (214)
+.....+|.++++...+++..|.++..++.+..++|||||+||..++.+++.+..
T Consensus 178 ~~~~~~~g~~~td~~~~~~~~~~~v~~v~~~~~~~dIdtpeDl~~a~~~~~~~~~ 232 (236)
T 1i52_A 178 LTRALNEGATITDEASALEYCGFHPQLVEGRADNIKVTRPEDLALAEFYLTRTIH 232 (236)
T ss_dssp HHHHHHTTCCCCSHHHHHHHTTCCCEEEECCTTCCCCCSHHHHHHHHHHHCC---
T ss_pred HHHHHhcCCCcccHHHHHHHcCCCEEEEecCccccccCCHHHHHHHHHHHHHhhh
Confidence 8766566777888888888888888888877789999999999999999887643
|
| >2vsh_A TARI, 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase; nucleotidyltransferase; HET: 1PE PG4 P6G; 2.00A {Streptococcus pneumoniae} PDB: 2vsi_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=3e-30 Score=202.00 Aligned_cols=204 Identities=27% Similarity=0.370 Sum_probs=161.5
Q ss_pred CCCceeeeeCCeehHHHHHHHHhcCCCcCeEEEEeCCCchHHHHHHHHhcC--C--cEEEecCCccHHHHHHHHHhhcc-
Q 028081 4 NMPKQYLPLLGQPIALYSFYTFSRMVEVKEIVVVCDPSYSDIFEETKEKIN--V--DLKFSLPGKERQDSVYSGLQEVD- 78 (214)
Q Consensus 4 ~~~K~l~~l~gkpli~~~i~~~~~~~~~~~iiVv~~~~~~~~~~~~~~~~~--~--~~~~~~~~~~~~~sv~~al~~~~- 78 (214)
++||+|++++|||||+|+++++.+++.+++|+|+++++..+.+++.+..++ . ...+..++.++.+|+++|+..+.
T Consensus 20 ~~~K~l~~i~g~pli~~~l~~l~~~~~~~~i~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~ 99 (236)
T 2vsh_A 20 NLPKQFLELGDRPILIHTIEKFVLEPSIEKIVVGVHGDWVSHAEDLVDKYLPLYKERIIITKGGADRNTSIKNIIEAIDA 99 (236)
T ss_dssp --CGGGSEETTEEHHHHHHHHHHTCTTCCCEEEEECGGGHHHHHHHHHHHCGGGGGGEEEEECCSSHHHHHHHHHHHHHH
T ss_pred CCCCeeeeeCCccHHHHHHHHHHcCCCCCeEEEEeCHHHHHHHHHHHHhccccccCceEEECCCCchHHHHHHHHHHHHh
Confidence 468999999999999999999998866899999999875344666665555 2 34566777788999999998874
Q ss_pred --c--CCCeEEEEcCCCCCCCHHHHHHHHHHHHhcCCeEEeeeccccEEEecCCC-ceeeecCccchhhhcCCcccChHH
Q 028081 79 --F--NSELVCIHDSARPLVLSKDVQKVLMDALRVGAAVLGVPAKATIKEANSES-FVVRTLDRKTLWEMQTPQVIKPDL 153 (214)
Q Consensus 79 --~--~~~~vl~~~~d~P~v~~~~i~~~i~~~~~~~~~i~~~~~~~~~~~~~~~g-~v~~~~~r~~~~~~~~p~~f~~~~ 153 (214)
. +.+++++++||+||+++++++++++.+.+.++++++.+..++++.. ++| .+..+.++..++..++|+.|+++.
T Consensus 100 ~~~~~~~~~vlv~~~D~P~~~~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~-~~g~~~~~~~~~~~~~~~~~p~~f~~~~ 178 (236)
T 2vsh_A 100 YRPLTPEDIVVTHDSVRPFITLRMIQDNIQLAQNHDAVDTVVEAVDTIVES-TNGQFITDIPNRAHLYQGQTPQTFRCKD 178 (236)
T ss_dssp HSCCCTTCEEEEEETTCTTCCHHHHHHHHHHHHHSSEEEEEEECCSCEEEC-SSSSBCCBCCCGGGEEEEEEEEEEEHHH
T ss_pred hccCCCCCEEEEecCCcccCCHHHHHHHHHHHHhcCcEEEEEeccccEEEe-CCCCeeeeecChHHheeecCCcEecHHH
Confidence 2 3478999999999999999999999887665456677888887664 456 676777777777677899999988
Q ss_pred HHHHHHHHHhcCCC-CCcHHHHHHhCCCCeEEEecCCCCcccCCHHHHHHHHHHhh
Q 028081 154 LKKGFELVNREGLE-VTDDVSIVEHLKHPVYITEGSYTNIKVTTPDDLLIAERILN 208 (214)
Q Consensus 154 l~~~~~~~~~~~~~-~~d~~~~~~~~g~~i~~v~~~~~~~~Idtp~Dl~~a~~~~~ 208 (214)
+..++......+++ +++...++...|.++..++.+..++|||||+||..++.+++
T Consensus 179 l~~~~~~~~~~g~~~~~~~~~~l~~~~~~v~~~~~~~~~~dIdtpeDl~~a~~~~~ 234 (236)
T 2vsh_A 179 FMDLYGSLSDEEKEILTDACKIFVIKGKDVALAKGEYSNLKITTVTDLKIAKSMIE 234 (236)
T ss_dssp HHHHHHTCCHHHHHHCCSHHHHHHHTTCCEEEEECCTTCCCCCSHHHHHHHHHHTC
T ss_pred HHHHHHHHHhcCCCcCCCHHHHHHHcCCCEEEEECCccccCcCCHHHHHHHHHHhh
Confidence 87777643333444 78877777788889998887778999999999999999875
|
| >2xwl_A 2-C-methyl-D-erythritol 4-phosphate cytidylyltran; transferase, MEP pathway; HET: CTP; 1.49A {Mycobacterium smegmatis} PDB: 2xwm_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=6.6e-30 Score=198.53 Aligned_cols=205 Identities=30% Similarity=0.410 Sum_probs=162.6
Q ss_pred CCCCCCceeeeeCCeehHHHHHHHHhcCCCcCeEEEEeCCCchHHHHHHHHhcCCcEEEecCCccHHHHHHHHHhhcccC
Q 028081 1 MGANMPKQYLPLLGQPIALYSFYTFSRMVEVKEIVVVCDPSYSDIFEETKEKINVDLKFSLPGKERQDSVYSGLQEVDFN 80 (214)
Q Consensus 1 m~~~~~K~l~~l~gkpli~~~i~~~~~~~~~~~iiVv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sv~~al~~~~~~ 80 (214)
|++..||+|++++|+|||+|+++++.+++.+++|+|+++++..+.+.+.+. +..+.++.++.++.+++..|+..++ +
T Consensus 16 ~~~~~~K~l~~~~g~pli~~~l~~l~~~~~~~~i~vv~~~~~~~~~~~~~~--~~~v~~~~~~~~~~~~i~~al~~~~-~ 92 (223)
T 2xwl_A 16 LRAGRPKAFVTLGGTPLLEHALSGLRASGVIDRIVIAVPPALTDESKLVFG--GEDSVIVSGGVDRTESVALALEAAG-D 92 (223)
T ss_dssp GTSSSCGGGSEETTEEHHHHHHHHHHHHSCCSEEEEEECGGGHHHHHHHTC--BTTEEEEECCSSHHHHHHHHHTTCT-T
T ss_pred cCCCCCCeeeEECCeEHHHHHHHHHhcCCCCCeEEEEEcccHHHHHHHHhc--cCCeEEEcCCCCHHHHHHHHHHhcC-C
Confidence 444579999999999999999999998766899999999875333443322 2345566666678899999998883 3
Q ss_pred CCeEEEEcCCCCCCCHHHHHHHHHHH-HhcCCeEEeeeccccEEEecCCCceeeecCccchhhhcCCcccChHHHHHHHH
Q 028081 81 SELVCIHDSARPLVLSKDVQKVLMDA-LRVGAAVLGVPAKATIKEANSESFVVRTLDRKTLWEMQTPQVIKPDLLKKGFE 159 (214)
Q Consensus 81 ~~~vl~~~~d~P~v~~~~i~~~i~~~-~~~~~~i~~~~~~~~~~~~~~~g~v~~~~~r~~~~~~~~p~~f~~~~l~~~~~ 159 (214)
.+.+++++||+||+++++++++++.+ .+.++++++.+..++.+.++++|.+..+.+++.++..++|+.|+++.+..++.
T Consensus 93 ~~~vlv~~~D~P~~~~~~i~~l~~~~~~~~~~~i~~~~~~d~~~~~~~~g~~~~~~e~~~l~~~~~p~~f~~~~l~~~~~ 172 (223)
T 2xwl_A 93 AEFVLVHDAARALTPPALIARVVAALKEGHSAVVPGLAPADTIKAVDANGAVLGTPERAGLRAVQTPQGFHADVLRRAYA 172 (223)
T ss_dssp CSEEEECCTTCTTCCHHHHHHHHHHHHHTCSEEEEEECCSSCEEEECTTSBEEECCCGGGEEEECSCEEEEHHHHHHHHT
T ss_pred CCEEEEEcCCcccCCHHHHHHHHHHHhhcCCeEEEEEecccceEEEcCCCcEEeecChHHheeeeCCcccCHHHHHHHHH
Confidence 67899999999999999999999988 55566677788888877766567777777887777778899999887776654
Q ss_pred HHHhcCCCCCcHHHHHHhCCCCeEEEecCCCCcccCCHHHHHHHHHHhhcc
Q 028081 160 LVNREGLEVTDDVSIVEHLKHPVYITEGSYTNIKVTTPDDLLIAERILNLS 210 (214)
Q Consensus 160 ~~~~~~~~~~d~~~~~~~~g~~i~~v~~~~~~~~Idtp~Dl~~a~~~~~~~ 210 (214)
.. .++++++...++...|.++..++.+..++|||||+||..++.+++.+
T Consensus 173 ~~--~~~~~~~~~~~~~~~~~~v~~~~~~~~~~dIdtpeDl~~a~~~l~~~ 221 (223)
T 2xwl_A 173 RA--TAGGVTDDASLVEQLGTPVQIVDGDPLAFKITTPLDLVLAEAVLAHH 221 (223)
T ss_dssp TC--CSCCCCCHHHHHHTTTCCCEEEECCGGGCCCCSHHHHHHHHHHHHHT
T ss_pred Hh--hCCCCccHHHHHHHcCCCEEEEECCcccccccCHHHHHHHHHHHhhc
Confidence 31 14677888888887888888888777889999999999999988765
|
| >1vgw_A 4-diphosphocytidyl-2C-methyl-D-erythritol synthas; structural genomics, transferase; 2.35A {Neisseria gonorrhoeae} SCOP: c.68.1.13 PDB: 1vgz_A | Back alignment and structure |
|---|
Probab=99.97 E-value=9.6e-30 Score=198.70 Aligned_cols=203 Identities=28% Similarity=0.432 Sum_probs=155.9
Q ss_pred CCCCCCceeeeeCCeehHHHHHHHHhcCCCcCeEEEEeCCCchHHHHHHHHhcC-CcEEEecCCccHHHHHHHHHhhccc
Q 028081 1 MGANMPKQYLPLLGQPIALYSFYTFSRMVEVKEIVVVCDPSYSDIFEETKEKIN-VDLKFSLPGKERQDSVYSGLQEVDF 79 (214)
Q Consensus 1 m~~~~~K~l~~l~gkpli~~~i~~~~~~~~~~~iiVv~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~sv~~al~~~~~ 79 (214)
||++.||+|++++|||||+|+++++.+++.+++|+|+++++. +.+.+ +..++ ..+.++.++.++.+|+++|+.++..
T Consensus 20 ~~~~~~K~l~~~~gkpli~~~l~~l~~~~~~~~ivvv~~~~~-~~~~~-~~~~~~~~i~~~~~~~~~~~si~~~l~~~~~ 97 (231)
T 1vgw_A 20 FGADKPKQYVEIGSKTVLEHVLGIFERHEAVDLTVVVVSPED-TFADK-VQTAFPQVRVWKNGGQTRAETVRNGVAKLLE 97 (231)
T ss_dssp -----CCSCCEETTEEHHHHHHHHHHTCTTCCEEEEECCTTC-STHHH-HHHHCTTSEEECCCCSSHHHHHHHHHHHHHH
T ss_pred CCCCCCceEeEECCeEHHHHHHHHHHcCCCCCeEEEEECccH-HHHHH-HHhcCCCceEEEcCCCcHHHHHHHHHHHHhh
Confidence 444569999999999999999999998866899999998764 23444 44443 2455666777889999999988742
Q ss_pred -----CCCeEEEEcCCCCCCCHHHHHHHHHHHHhcC-CeEEeeeccccEEEecCCCceeeecCccchhhhcCCcccChHH
Q 028081 80 -----NSELVCIHDSARPLVLSKDVQKVLMDALRVG-AAVLGVPAKATIKEANSESFVVRTLDRKTLWEMQTPQVIKPDL 153 (214)
Q Consensus 80 -----~~~~vl~~~~d~P~v~~~~i~~~i~~~~~~~-~~i~~~~~~~~~~~~~~~g~v~~~~~r~~~~~~~~p~~f~~~~ 153 (214)
+.+.+++++||+||+++++++++++.+...+ +++++.+..++.+..+ +|.+....+++.++..++|++|+++.
T Consensus 98 ~~~~~~~~~vlv~~~D~p~~~~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~g~i~~~~~~~~~~~~~~p~~f~~~~ 176 (231)
T 1vgw_A 98 TGLAAETDNILVHDAARCCLPSEALARLIEQAGNAAEGGILAVPVADTLKRAE-SGQISATVDRSGLWQAQTPQLFQAGL 176 (231)
T ss_dssp HSSSCTTSEEEECCTTCTTCCHHHHHHHHHHHTTCTTCEEEEEECCSCEEEES-SSBEEEEECCTTEEEEEEEEEEEHHH
T ss_pred hccCCCCCEEEEEcCCcccCCHHHHHHHHHHHhhcCCeEEEEeecccceEEeC-CCceEecCChHHheeeeCCcEecHHH
Confidence 3588999999999999999999999876544 4666788887766543 45666667777777788999999988
Q ss_pred HHHHHHHHHhcCCCCCcHHHHHHhCCCCeEEEecCCCCcccCCHHHHHHHHHHhh
Q 028081 154 LKKGFELVNREGLEVTDDVSIVEHLKHPVYITEGSYTNIKVTTPDDLLIAERILN 208 (214)
Q Consensus 154 l~~~~~~~~~~~~~~~d~~~~~~~~g~~i~~v~~~~~~~~Idtp~Dl~~a~~~~~ 208 (214)
+.+++.....+| +++...++...|.++..++.+..++|||||+||..++.+++
T Consensus 177 l~~~~~~~~~~g--~~~~~~~~~~~~~~v~~v~~~~~~~dIdtpeDl~~a~~~l~ 229 (231)
T 1vgw_A 177 LHRALAAENLGG--ITDEASAVEKLGVRPLLIQGDARNLKLTQPQDAYIVRLLLD 229 (231)
T ss_dssp HHHHHHC----C--CCSHHHHHHTTTCCCEEEECCTTCCCCCSHHHHHHHHHHCC
T ss_pred HHHHHHHHhhcC--CCcHHHHHHHcCCCEEEEECCccccCcCCHHHHHHHHHHHh
Confidence 887765433333 67777788878888988887778999999999999998875
|
| >2px7_A 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase; TTHA0171, ISPD_THET8, ISPD, structural genomics PSI; 2.20A {Thermus thermophilus HB8} | Back alignment and structure |
|---|
Probab=99.96 E-value=1.8e-28 Score=192.47 Aligned_cols=197 Identities=32% Similarity=0.452 Sum_probs=155.2
Q ss_pred CCCCCCceeeeeCCeehHHHHHHHHhcCCCcCeEEEEeCCCchHHHHHHHHhcCCcEEEecCCccHHHHHHHHHhhcccC
Q 028081 1 MGANMPKQYLPLLGQPIALYSFYTFSRMVEVKEIVVVCDPSYSDIFEETKEKINVDLKFSLPGKERQDSVYSGLQEVDFN 80 (214)
Q Consensus 1 m~~~~~K~l~~l~gkpli~~~i~~~~~~~~~~~iiVv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sv~~al~~~~~~ 80 (214)
||++ ||+|++++|+|||+|++++ . ..+++|+|++++ .+ .+ +... .+.++.++.++..++..|+..+.
T Consensus 39 m~~~-~K~l~~i~gkpli~~~l~~--~-~~~~~ivvv~~~-~~---~~-~~~~--~v~~~~~~~~~~~~i~~al~~~~-- 105 (236)
T 2px7_A 39 LGRG-PKAFLQVGGRTLLEWTLAA--F-RDAAEVLVALPP-GA---EP-PKGL--GAVFLEGGATRQASVARLLEAAS-- 105 (236)
T ss_dssp ---C-CGGGCBCSSSBHHHHHHHH--T-TTCSEEEEEECT-TC---CC-CTTC--SCEEEECCSSHHHHHHHHHHHCC--
T ss_pred CCCC-CCeEEEECCEEHHHHHHHh--c-CCCCeEEEEeCH-HH---HH-hhcC--CcEEEeCCCchHHHHHHHHHHcC--
Confidence 4444 9999999999999999999 3 458999999986 32 12 2222 34556666678999999998885
Q ss_pred CCeEEEEcCCCCCCCHHHHHHHHHHHHhcCCeEEeeeccccEEEecCCCceeeecCccchhhhcCCcccChHHHHHHHHH
Q 028081 81 SELVCIHDSARPLVLSKDVQKVLMDALRVGAAVLGVPAKATIKEANSESFVVRTLDRKTLWEMQTPQVIKPDLLKKGFEL 160 (214)
Q Consensus 81 ~~~vl~~~~d~P~v~~~~i~~~i~~~~~~~~~i~~~~~~~~~~~~~~~g~v~~~~~r~~~~~~~~p~~f~~~~l~~~~~~ 160 (214)
.+.+++++||+||+++++++++++.+...++++++.+..++.+..+ +|.+..+++++.++.+++|+.|+++.+.+++..
T Consensus 106 ~~~vlv~~~D~P~~~~~~i~~l~~~~~~~~~~i~~~~~~~~~~~~~-~G~v~~~~~~~~~~~~~~~~~f~~~~l~~~~~~ 184 (236)
T 2px7_A 106 LPLVLVHDVARPFVSRGLVARVLEAAQRSGAAVPVLPVPDTLMAPE-GEAYGRVVPREAFRLVQTPQGFFTALLREAHAY 184 (236)
T ss_dssp SSEEEECCTTCCCCCHHHHHHHHHHHHHHSEEEEEEECCSEEEEEC-SSSCEEEECGGGCEEECSCEEEEHHHHHHHHHH
T ss_pred CCeEEEecCccccCCHHHHHHHHHHHHhcCCeEEEEecCCcEEEec-CCeEEecCChHhhccccCCeEEcHHHHHHHHHH
Confidence 5789999999999999999999998766666666778877766554 566767777877777889999999888887766
Q ss_pred HHhcCCCCCcHHHHHHhCCCCeEEEecCCCCcccCCHHHHHHHHHHhhccc
Q 028081 161 VNREGLEVTDDVSIVEHLKHPVYITEGSYTNIKVTTPDDLLIAERILNLSS 211 (214)
Q Consensus 161 ~~~~~~~~~d~~~~~~~~g~~i~~v~~~~~~~~Idtp~Dl~~a~~~~~~~~ 211 (214)
....++++++...+++..|.++..+..+..++|||||+||..++.+++.+.
T Consensus 185 ~~~~g~~~~d~~~ll~~~~~~v~~v~~~~~~~dIdtpeDl~~a~~~l~~~~ 235 (236)
T 2px7_A 185 ARRKGLEASDDAQLVQALGYPVALVEGEATAFKITHPQDLVLAEALARVWS 235 (236)
T ss_dssp HHHHTCCCSSHHHHHHHTTCCCEEEECCTTCCCCCSHHHHHHHHHHHTC--
T ss_pred HHhcCCCchhHHHHHHHcCCcEEEEECCccccCCCCHHHHHHHHHHHHhcc
Confidence 555567888888888888888888877778999999999999999988654
|
| >1w55_A ISPD/ISPF bifunctional enzyme; biosynthetic pathway, isoprenoids, nonmevalonate, transferase; HET: C GPP; 2.3A {Campylobacter jejuni} SCOP: c.68.1.13 d.79.5.1 PDB: 1w57_A* | Back alignment and structure |
|---|
Probab=99.95 E-value=4e-28 Score=201.16 Aligned_cols=189 Identities=25% Similarity=0.349 Sum_probs=151.4
Q ss_pred CCCCCCceeeeeCCeehHHHHHHHHhcCCCcCeEEEEeCCCchHHHHHHHHhcCCcEEEecCCccHHHHHHHHHhhcccC
Q 028081 1 MGANMPKQYLPLLGQPIALYSFYTFSRMVEVKEIVVVCDPSYSDIFEETKEKINVDLKFSLPGKERQDSVYSGLQEVDFN 80 (214)
Q Consensus 1 m~~~~~K~l~~l~gkpli~~~i~~~~~~~~~~~iiVv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sv~~al~~~~~~ 80 (214)
||++.||+|++++|||||+|+++++++++.+++|+|+++ +. +.+++.+. .+.++.++.++.+|+++|++++.
T Consensus 17 mg~~~pK~ll~l~GkPLi~~~l~~l~~~~~~~~IvVvt~-~~-~~i~~~~~----~v~~v~~g~g~~~sv~~aL~~l~-- 88 (371)
T 1w55_A 17 FNTKVKKQFLRLGNDPLWLYATKNLSSFYPFKKIVVTSS-NI-TYMKKFTK----NYEFIEGGDTRAESLKKALELID-- 88 (371)
T ss_dssp TCSSSCGGGCEEBTEEHHHHHHHHHHTTSCCSCEEEEES-CH-HHHHTTCS----SSEEEECCSSHHHHHHHHHTTCC--
T ss_pred CCCCCCcceEEECCeEHHHHHHHHHHccCCCCeEEEEcC-CH-HHHHHHhC----CCEEEeCCCChHHHHHHHHHhcC--
Confidence 555579999999999999999999998667899999998 42 33433222 24556777889999999999875
Q ss_pred CCeEEEEcCCCCCCCHHHHHHHHHHHHhcCCeEEeeeccccEEEecCCCceeeecCccchhhhcCCcccChHHHHHHHHH
Q 028081 81 SELVCIHDSARPLVLSKDVQKVLMDALRVGAAVLGVPAKATIKEANSESFVVRTLDRKTLWEMQTPQVIKPDLLKKGFEL 160 (214)
Q Consensus 81 ~~~vl~~~~d~P~v~~~~i~~~i~~~~~~~~~i~~~~~~~~~~~~~~~g~v~~~~~r~~~~~~~~p~~f~~~~l~~~~~~ 160 (214)
.+.+++++||+||+++++|+++++.+.+.++++++.+..++++++ ..+.+|+.++..++|+.|+++.+.+++..
T Consensus 89 ~d~vlv~~~D~Pli~~~~i~~li~~~~~~~a~i~~~~~~d~vk~v------~~t~~r~~l~~~~~P~~f~~~~l~~~~~~ 162 (371)
T 1w55_A 89 SEFVMVSDVARVLVSKNLFDRLIENLDKADCITPALKVADTTLFD------NEALQREKIKLIQTPQISKTKLLKKALDQ 162 (371)
T ss_dssp SSEEEEEETTCTTCCHHHHHHHHTTGGGCSEEEEEECCCSCEEET------TEEECGGGCCEECSCEEEEHHHHHHHTSS
T ss_pred CCeEEEEeCCcccCCHHHHHHHHHHHHhcCCEEEEEEeecCeeee------eeecCccceeecCCcceecHHHHHHHHHh
Confidence 589999999999999999999998877666677788888776542 13457777888889999999888776542
Q ss_pred HHhcCCCCCcHHHHHHhCCCCeEEEecCCCCcccCCHHHHHHHHHHhh
Q 028081 161 VNREGLEVTDDVSIVEHLKHPVYITEGSYTNIKVTTPDDLLIAERILN 208 (214)
Q Consensus 161 ~~~~~~~~~d~~~~~~~~g~~i~~v~~~~~~~~Idtp~Dl~~a~~~~~ 208 (214)
.++ .++...++++.|.++..++++..++|||||+||..++ +++
T Consensus 163 ---~~~-~td~~~ll~~~g~~V~~v~~~~~~~dIdTpeDL~~Ae-ll~ 205 (371)
T 1w55_A 163 ---NLE-FTDDSTAIAAMGGKIWFVEGEENARKLTFKEDLKKLD-LPT 205 (371)
T ss_dssp ---CCC-CSSHHHHHHTTTCCEEEEECCGGGCCCCSGGGGGGSC-CCC
T ss_pred ---ccc-ccCHHHHHHhCCCcEEEEECCccccCCCCHHHHHHHH-HhC
Confidence 223 7888888888899999888877899999999999998 764
|
| >4fcu_A 3-deoxy-manno-octulosonate cytidylyltransferase; structural genomics, niaid, national institute of allergy AN infectious diseases; 1.90A {Acinetobacter baumannii} PDB: 3pol_A | Back alignment and structure |
|---|
Probab=99.93 E-value=2.8e-25 Score=175.68 Aligned_cols=201 Identities=16% Similarity=0.129 Sum_probs=139.7
Q ss_pred CceeeeeCCeehHHHHH-HHHhcCCCcCeEEEEeCCCchHHHHHHHHhcCCcEEEec-CCccHHHHHHHHHhhccc-CCC
Q 028081 6 PKQYLPLLGQPIALYSF-YTFSRMVEVKEIVVVCDPSYSDIFEETKEKINVDLKFSL-PGKERQDSVYSGLQEVDF-NSE 82 (214)
Q Consensus 6 ~K~l~~l~gkpli~~~i-~~~~~~~~~~~iiVv~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~sv~~al~~~~~-~~~ 82 (214)
+|+|++++|||||.|++ +++++++ +++|+|+++++ .+.+.+..+|..+.+.. +.....+++.+|+..+.. +.|
T Consensus 17 ~K~L~~i~GkPli~~~i~~~~~~~~-~~~vvVvt~~~---~i~~~~~~~g~~v~~~~~~~~~Gt~~i~~a~~~~~~~~~d 92 (253)
T 4fcu_A 17 GKPLLLIHDRPMILRVVDQAKKVEG-FDDLCVATDDE---RIAEICRAEGVDVVLTSADHPSGTDRLSEVARIKGWDADD 92 (253)
T ss_dssp TGGGSEETTEEHHHHHHHHHHTCTT-CCEEEEEESCH---HHHHHHHTTTCCEEECCTTCCCHHHHHHHHHHHHTCCTTC
T ss_pred CCceeeECCeEhHHHHHHHHHHhcC-CCEEEEECCHH---HHHHHHHHcCCeEEEeCCCCCChHHHHHHHHHhcCcCCCC
Confidence 49999999999999999 9998875 89999999863 46677777777665532 222334568888877752 358
Q ss_pred eEEEEcCCCCCCCHHHHHHHHHHHHhc-C--CeEEeeeccc------c--EEE-ecCCCceee----ec--Cccc-----
Q 028081 83 LVCIHDSARPLVLSKDVQKVLMDALRV-G--AAVLGVPAKA------T--IKE-ANSESFVVR----TL--DRKT----- 139 (214)
Q Consensus 83 ~vl~~~~d~P~v~~~~i~~~i~~~~~~-~--~~i~~~~~~~------~--~~~-~~~~g~v~~----~~--~r~~----- 139 (214)
++++++||+||+++++|+++++.+.+. + .++++.++.+ + ++. .+.+|.+.. ++ +|+.
T Consensus 93 ~vlv~~gD~Pli~~~~i~~li~~~~~~~~~~~at~~~~~~~~~~~~~p~~~kvv~d~~g~~l~fsr~~ip~~r~~~~~~~ 172 (253)
T 4fcu_A 93 IIVNVQGDEPLLPAQLVQQVAKLLVDKPNCSMSTLCEPIHALDEFQRDSIVKVVMSKQNEALYFSRATIPYDRDGAKRDE 172 (253)
T ss_dssp EEEECCTTCTTCCHHHHHHHHHHHHHCTTCSEEEEEEECCCHHHHHCTTSCEEEECTTSBEEEEESSCCSCCTTTSSSSS
T ss_pred EEEEEeCCcccCCHHHHHHHHHHHHhCCCCCEEEEeEEcCCHHHccCCCccEEEECCCCeEEEecCCCCCCCCCcccccc
Confidence 999999999999999999999988654 2 2445566432 2 222 244565432 11 2221
Q ss_pred ------hhhhcCCcccChHHHHHHHHHHHhcCCCCCcHHHHHH--hCCCCeEEEecCCC-CcccCCHHHHHHHHHHhhcc
Q 028081 140 ------LWEMQTPQVIKPDLLKKGFELVNREGLEVTDDVSIVE--HLKHPVYITEGSYT-NIKVTTPDDLLIAERILNLS 210 (214)
Q Consensus 140 ------~~~~~~p~~f~~~~l~~~~~~~~~~~~~~~d~~~~~~--~~g~~i~~v~~~~~-~~~Idtp~Dl~~a~~~~~~~ 210 (214)
.+..-.-|+|+...|..+.. .....++.++..++++ ++|.+|.++..+.. +++||||+||+.|+++++.|
T Consensus 173 ~~~~~~~~~~~GiY~f~~~~l~~~~~-~~~~~le~~e~le~lr~l~~G~~I~~~~~~~~~~~~IdtpeDL~~a~~~l~~r 251 (253)
T 4fcu_A 173 PTLHTQAFRHLGLYAYRVSLLQEYVT-WEMGKLEKLESLEQLRVLENGHRIAIAVAEANLPPGVDTQADLDRLNNMPVES 251 (253)
T ss_dssp CCCCSCCEEEEEEEEEEHHHHHHHTT-SCCCHHHHHHTCTTHHHHHTTCCEEEEECSSCCCCCCCSHHHHHHHHTSCGGG
T ss_pred cccccceeEEEEEEEeCHHHHHHHHh-CCCCcccchhHHHHHHHHHCCCceEEEEeCCCCCCCCCCHHHHHHHHHHHHhh
Confidence 12222347899887766432 1111234555555554 67999998887666 89999999999999998766
Q ss_pred c
Q 028081 211 S 211 (214)
Q Consensus 211 ~ 211 (214)
.
T Consensus 252 ~ 252 (253)
T 4fcu_A 252 F 252 (253)
T ss_dssp G
T ss_pred c
Confidence 3
|
| >3k8d_A 3-deoxy-manno-octulosonate cytidylyltransferase; KDSB synthetase KDO complex, lipopolysaccharide biosynthesis magnesium, nucleotidyltransferase; HET: KDO CTP; 1.90A {Escherichia coli} SCOP: c.68.1.13 PDB: 3k8e_C 1vh1_A 3jtj_A* | Back alignment and structure |
|---|
Probab=99.93 E-value=7.5e-25 Score=174.19 Aligned_cols=200 Identities=13% Similarity=0.213 Sum_probs=135.2
Q ss_pred CCC-ceeeeeCCeehHHHHHHHHhcCCCcCeEEEEeCCCchHHHHHHHHhcCCcEEEecC-CccHHHHHHHHHhhcc-cC
Q 028081 4 NMP-KQYLPLLGQPIALYSFYTFSRMVEVKEIVVVCDPSYSDIFEETKEKINVDLKFSLP-GKERQDSVYSGLQEVD-FN 80 (214)
Q Consensus 4 ~~~-K~l~~l~gkpli~~~i~~~~~~~~~~~iiVv~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~sv~~al~~~~-~~ 80 (214)
..| |+|++++|||||.|+++++.+++ +++|+|++++ +.+++.++.++..+.+... .....+.+..++..+. .+
T Consensus 31 Rlp~K~L~~i~GkPmi~~~l~~l~~~~-i~~IvV~t~~---~~i~~~~~~~g~~v~~~~~~~~~Gt~~i~~~~~~l~~~~ 106 (264)
T 3k8d_A 31 RLPGKPLVDINGKPMIVHVLERARESG-AERIIVATDH---EDVARAVEAAGGEVCMTRADHQSGTERLAEVVEKCAFSD 106 (264)
T ss_dssp SSTTGGGCEETTEEHHHHHHHHHHHTT-CSEEEEEESC---HHHHHHHHHTTCEEEECCTTCCSHHHHHHHHHHHHTCCT
T ss_pred CCCCcceeeECCeEHHHHHHHHHHhCC-CCEEEEECCH---HHHHHHHHHcCCEEEEecCCCCCCHHHHHHHHHHhccCC
Confidence 456 99999999999999999999886 8999999964 3466777777766554321 1112233555555553 23
Q ss_pred CCeEEEEcCCCCCCCHHHHHHHHHHHHhcC--CeEEeeecccc--------EEEe-cCCCceee----ec--Cccc----
Q 028081 81 SELVCIHDSARPLVLSKDVQKVLMDALRVG--AAVLGVPAKAT--------IKEA-NSESFVVR----TL--DRKT---- 139 (214)
Q Consensus 81 ~~~vl~~~~d~P~v~~~~i~~~i~~~~~~~--~~i~~~~~~~~--------~~~~-~~~g~v~~----~~--~r~~---- 139 (214)
.|.|++++||+||+++++|+++++.+...+ .++++.++.++ ++.+ +.+|.+.. ++ +|+.
T Consensus 107 ~d~vlv~~gD~Pli~~~~i~~li~~~~~~~~~~~~~~~~v~d~~~~~~p~~vkVv~d~~g~~l~fsr~~ip~~r~~~~~~ 186 (264)
T 3k8d_A 107 DTVIVNVQGDEPMIPATIIRQVADNLAQRQVGMATLAVPIHNAEEAFNPNAVKVVLDAEGYALYFSRATIPWDRDRFAEG 186 (264)
T ss_dssp TCEEEEECTTCTTCCHHHHHHHHHHHHTSSCSEEEEEEECCSHHHHTCTTSCEEEECTTSBEEEEESSCCSCCHHHHHHC
T ss_pred CCEEEEEcCCcccCCHHHHHHHHHHHhhcCCCEEEEEEEcCCHHHccCCCceEEEECCCCeEEEEecCCCCCCCcccccc
Confidence 689999999999999999999999887543 46777887652 3333 55676543 22 3321
Q ss_pred -------hhhhcCCcccChHHHHHHHHHHHhcCCCCCcHHHHHH--hCCCCeEEE-ecCCCCcccCCHHHHHHHHHHhh
Q 028081 140 -------LWEMQTPQVIKPDLLKKGFELVNREGLEVTDDVSIVE--HLKHPVYIT-EGSYTNIKVTTPDDLLIAERILN 208 (214)
Q Consensus 140 -------~~~~~~p~~f~~~~l~~~~~~~~~~~~~~~d~~~~~~--~~g~~i~~v-~~~~~~~~Idtp~Dl~~a~~~~~ 208 (214)
.+..-.-|+|+...|..+.. .....++.++..++++ +.|.+|.++ ..+..+++||||+||+.|+++++
T Consensus 187 ~~~~~~~~~~~~GiY~y~~~~l~~~~~-~~~~~lE~~e~leqlr~le~G~~I~~~~~~~~~~~~IdtpeDl~~a~~~l~ 264 (264)
T 3k8d_A 187 LETVGDNFLRHLGIYGYRAGFIRRYVN-WQPSPLEHIEMLEQLRVLWYGEKIHVAVAQEVPGTGVDTPEDLERVRAEMR 264 (264)
T ss_dssp SSCCCSCCEEECSEEEEEHHHHHHHHH-SCCCHHHHHHTCTTHHHHHTTCCEEEEECSCCCSCCCCSHHHHHHHHHHC-
T ss_pred ccccCCcceEEEEEEEECHHHHHHHHh-CCCChhhhHHHHHHHHHHHCCCceEEEEeCCCCCCCCCCHHHHHHHHHHhC
Confidence 12222347888887766533 1111122233233333 679999986 55678899999999999999874
|
| >1h7e_A 3-deoxy-manno-octulosonate cytidylyltransferase; nucleotidyltransferase, CMP-KDO synthetase, nucleoside monophosphate glycosides; 1.83A {Escherichia coli} SCOP: c.68.1.13 PDB: 1gqc_A* 1gq9_A 1h6j_A 1h7f_A* 1h7g_A* 1h7h_A* 1h7t_A* | Back alignment and structure |
|---|
Probab=99.92 E-value=1.5e-24 Score=170.67 Aligned_cols=200 Identities=15% Similarity=0.153 Sum_probs=140.0
Q ss_pred CceeeeeCCeehHHHHHHHHhcCCCcCeEEEEeCCCchHHHHHHHHhcCCcEEEec-CCccHHHHHHHHHhhcccCCCeE
Q 028081 6 PKQYLPLLGQPIALYSFYTFSRMVEVKEIVVVCDPSYSDIFEETKEKINVDLKFSL-PGKERQDSVYSGLQEVDFNSELV 84 (214)
Q Consensus 6 ~K~l~~l~gkpli~~~i~~~~~~~~~~~iiVv~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~sv~~al~~~~~~~~~v 84 (214)
||+|++++|||||+|+++++.+++.+++|+|+++++ .+.+.+..++..+.... ......+++..++..+. .+.+
T Consensus 18 ~K~l~~i~g~pli~~~i~~~~~~~~~~~ivvv~~~~---~i~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~--~~~~ 92 (245)
T 1h7e_A 18 GKPLLDIVGKPMIQHVYERALQVAGVAEVWVATDDP---RVEQAVQAFGGKAIMTRNDHESGTDRLVEVMHKVE--ADIY 92 (245)
T ss_dssp TGGGCEETTEEHHHHHHHHHHTCTTCCEEEEEESCH---HHHHHHHHTTCEEEECCSCCSSHHHHHHHHHHHSC--CSEE
T ss_pred CCcccccCCchHHHHHHHHHHhCCCCCeEEEECCcH---HHHHHHHHcCCeEEeCCCccCCcHHHHHHHHHhCC--CCEE
Confidence 899999999999999999999987559999999863 35666666665543321 22344677778887763 5889
Q ss_pred EEEcCCCCCCCHHHHHHHHHHHHhc-C--CeEEeeecc-------ccEEEe-cCCCceeee-----c-Cccc----hhhh
Q 028081 85 CIHDSARPLVLSKDVQKVLMDALRV-G--AAVLGVPAK-------ATIKEA-NSESFVVRT-----L-DRKT----LWEM 143 (214)
Q Consensus 85 l~~~~d~P~v~~~~i~~~i~~~~~~-~--~~i~~~~~~-------~~~~~~-~~~g~v~~~-----~-~r~~----~~~~ 143 (214)
++++||+||+++++++++++.+... + .++++.+.. ..++.+ +++|.+... . +|.. .+..
T Consensus 93 lv~~~D~P~~~~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~r~~~~~~~~~~ 172 (245)
T 1h7e_A 93 INLQGDEPMIRPRDVETLLQGMRDDPALPVATLCHAISAAEAAEPSTVKVVVNTRQDALYFSRSPIPYPRNAEKARYLKH 172 (245)
T ss_dssp EECCTTCTTCCHHHHHHHHHHHHHCTTCCEEEEEEEECHHHHTCTTSCEEEECTTCBEEEEESSCSSCCTTGGGCCEEEE
T ss_pred EEEcCCcCcCCHHHHHHHHHHHHhCCCCCEEEEeecCCHHHhcCCCCcEEEECCCCcEEEeecCCCCCCcccccCceeEE
Confidence 9999999999999999999987654 3 345566651 122222 334544321 1 2321 3446
Q ss_pred cCCcccChHHHHHHHHHHHhcCCCCCcHHHHHH--hCCCCeEEEecCCCCcccCCHHHHHHHHHHhhccc
Q 028081 144 QTPQVIKPDLLKKGFELVNREGLEVTDDVSIVE--HLKHPVYITEGSYTNIKVTTPDDLLIAERILNLSS 211 (214)
Q Consensus 144 ~~p~~f~~~~l~~~~~~~~~~~~~~~d~~~~~~--~~g~~i~~v~~~~~~~~Idtp~Dl~~a~~~~~~~~ 211 (214)
.++|.|+.+.|..++ .....+++++|....++ ..|.++..+..+..++|||||+||..|+.+++.++
T Consensus 173 ~g~y~~~~~~l~~~~-~~~~~~~~~td~~~~~~~~~~g~~v~~~~~~~~~~dIdtp~Dl~~a~~~l~~~~ 241 (245)
T 1h7e_A 173 VGIYAYRRDVLQNYS-QLPESMPEQAESLEQLRLMNAGINIRTFEVAATGPGVDTPACLEKVRALMAQEL 241 (245)
T ss_dssp EEEEEEEHHHHHHGG-GSCCCHHHHHHTCTTHHHHHTTCCEEEEECCCCCCCSSSHHHHHHHHHHHHHHH
T ss_pred EEEEEcCHHHHHHHH-hCCCCccccchhhHHHHHHHCCCeEEEEEeCCCCCCCCCHHHHHHHHHHHHHhh
Confidence 678999988776654 11111234455444444 56889998888888999999999999999987654
|
| >1ezi_A CMP-N-acetylneuraminic acid synthetase; homodimer, alpha-beta-alpha, transferase; 2.00A {Neisseria meningitidis} SCOP: c.68.1.13 PDB: 1eyr_A | Back alignment and structure |
|---|
Probab=99.92 E-value=2.4e-25 Score=173.59 Aligned_cols=192 Identities=17% Similarity=0.179 Sum_probs=128.9
Q ss_pred CceeeeeCCeehHHHHHHHHhcCCCcCeEEEEeCCCchHHHHHHHHhcCCcEEE-----ecCCccHHHHHHHHHhhcccC
Q 028081 6 PKQYLPLLGQPIALYSFYTFSRMVEVKEIVVVCDPSYSDIFEETKEKINVDLKF-----SLPGKERQDSVYSGLQEVDFN 80 (214)
Q Consensus 6 ~K~l~~l~gkpli~~~i~~~~~~~~~~~iiVv~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~sv~~al~~~~~~ 80 (214)
||+|++++|||||+|+++++.+++.+++|+|+++++. +.+.++.++..+.. ..++.++.+|+++|++.+..+
T Consensus 20 ~K~l~~i~gkpll~~~l~~~~~~~~~~~ivvv~~~~~---i~~~~~~~~~~~~~~~~~~~~~~~g~~~sv~~~l~~~~~~ 96 (228)
T 1ezi_A 20 LKNLRKMNGISLLGHTINAAISSKCFDRIIVSTDGGL---IAEEAKNFGVEVVLRPAELASDTASSISGVIHALETIGSN 96 (228)
T ss_dssp TTTTCEETTEEHHHHHHHHHHHHCCCSEEEEEESCHH---HHHHHHHTTCEEEECCC------CHHHHHHHHHHHHHTCC
T ss_pred CcccceeCCcCHHHHHHHHHHhCCCCCEEEEECCCHH---HHHHHHHcCCEEEeCchHHcCCCCChHHHHHHHHHHhCCC
Confidence 8999999999999999999998876899999997643 45556666654421 225667899999999988433
Q ss_pred CCeEEEEcCCCCCCCHHHHHHHHHHHHhc--CCeEEeeeccc-cEEE--ecCCCceeeecCccchhhhcCCcccChHHHH
Q 028081 81 SELVCIHDSARPLVLSKDVQKVLMDALRV--GAAVLGVPAKA-TIKE--ANSESFVVRTLDRKTLWEMQTPQVIKPDLLK 155 (214)
Q Consensus 81 ~~~vl~~~~d~P~v~~~~i~~~i~~~~~~--~~~i~~~~~~~-~~~~--~~~~g~v~~~~~r~~~~~~~~p~~f~~~~l~ 155 (214)
.+.+++++||+||+++++|+++++.+... ++++++.+..+ +.+. ++++|.+..+.+++.++ |+.+.+.
T Consensus 97 ~d~vlv~~~D~P~~~~~~i~~l~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~g~~~~~~~~~~~~-------~~~~~~~ 169 (228)
T 1ezi_A 97 SGTVTLLQPTSPLRTGAHIREAFSLFDEKIKGSVVSACPMEHHPLKTLLQINNGEYAPMRHLSDLE-------QPRQQLP 169 (228)
T ss_dssp SEEEEECCTTCTTCCHHHHHHHHTTCCTTTCCCEEEEEECSSCTTSCEEECC--CEEESSCHHHHT-------CCGGGSC
T ss_pred CCEEEEEcCCCCcCCHHHHHHHHHHHHhcCCCEEEEEEecCCCcceeeEEcCCCcEeecccccccc-------CCcccCc
Confidence 58899999999999999999999877543 45777788776 3322 14345555554443221 1111111
Q ss_pred HHHHHHHhcCCCCCcHHHHHHh---CCCCeEEEe-cCCCCcccCCHHHHHHHHHHhhc
Q 028081 156 KGFELVNREGLEVTDDVSIVEH---LKHPVYITE-GSYTNIKVTTPDDLLIAERILNL 209 (214)
Q Consensus 156 ~~~~~~~~~~~~~~d~~~~~~~---~g~~i~~v~-~~~~~~~Idtp~Dl~~a~~~~~~ 209 (214)
..+.. ..|.|+++...+.+. .|.++..+. ++..++|||||+||..|+.+++.
T Consensus 170 ~~~~~--~~giy~~~~~~l~~~~~~~g~~v~~~~~~~~~~~dIdtpeDl~~a~~~l~~ 225 (228)
T 1ezi_A 170 QAFRP--NGAIYINDTASLIANNCFFIAPTKLYIMSHQDSIDIDTELDLQQAENILNH 225 (228)
T ss_dssp CEEEE--EEEEEEEEHHHHHHHTSSCCSSCEEEECCTGGGCCCCSHHHHHHHHHHHC-
T ss_pred hhhee--eeEEEEEeHHHHhhCCcccCCceEEEEeCcccccCCCCHHHHHHHHHHHHh
Confidence 10000 123455555555444 577766544 44679999999999999998865
|
| >3tqd_A 3-deoxy-manno-octulosonate cytidylyltransferase; cell envelope; 1.80A {Coxiella burnetii} SCOP: c.68.1.0 | Back alignment and structure |
|---|
Probab=99.91 E-value=8e-24 Score=167.54 Aligned_cols=197 Identities=12% Similarity=0.150 Sum_probs=134.8
Q ss_pred CceeeeeCCeehHHHHHHHHhcCCCcCeEEEEeCCCchHHHHHHHHhcCCcEEEec-CCccHHHHHHHHHhhcc-cCCCe
Q 028081 6 PKQYLPLLGQPIALYSFYTFSRMVEVKEIVVVCDPSYSDIFEETKEKINVDLKFSL-PGKERQDSVYSGLQEVD-FNSEL 83 (214)
Q Consensus 6 ~K~l~~l~gkpli~~~i~~~~~~~~~~~iiVv~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~sv~~al~~~~-~~~~~ 83 (214)
||+|++++|||||.|+++++.+++ +++|+|+|++ +.+++.++.+|..+.+.. ......+.+..|++.+. .+.|.
T Consensus 25 ~K~L~~i~GkPli~~~l~~l~~~~-i~~VvVvt~~---~~i~~~~~~~g~~v~~~~~~~~~Gt~~i~~a~~~l~~~~~d~ 100 (256)
T 3tqd_A 25 GKALVDIAGKPMIQHVYESAIKSG-AEEVVIATDD---KRIRQVAEDFGAVVCMTSSDHQSGTERIAEAAVALGFEDDEI 100 (256)
T ss_dssp TGGGCEETTEEHHHHHHHHHHHTT-CSEEEEEESC---HHHHHHHHHTTCEEEECCTTCCSHHHHHHHHHHHTTCCTTCE
T ss_pred CCCeeeECCchHHHHHHHHHHhCC-CCEEEEECCH---HHHHHHHHHcCCeEEEeCCCCCCcHHHHHHHHHHhCcCCCCE
Confidence 699999999999999999999886 8999999975 346777777887665532 22223455788888773 23689
Q ss_pred EEEEcCCCCCCCHHHHHHHHHHHHhc---CCeEEeeecccc--------EEE-ecCCCceeee----c--Ccc-------
Q 028081 84 VCIHDSARPLVLSKDVQKVLMDALRV---GAAVLGVPAKAT--------IKE-ANSESFVVRT----L--DRK------- 138 (214)
Q Consensus 84 vl~~~~d~P~v~~~~i~~~i~~~~~~---~~~i~~~~~~~~--------~~~-~~~~g~v~~~----~--~r~------- 138 (214)
+++++||+||+++++|+++++.+.+. +.++.+.|+.+. ++. .+.+|.+... + +|+
T Consensus 101 vlv~~gD~Pli~~~~i~~li~~~~~~~~~~~a~l~~~v~~~~~~~~p~~vkvv~d~~g~~l~fsr~pip~~r~~~~~~~~ 180 (256)
T 3tqd_A 101 IVCLQGDEPLIPPDAIRKLAEDLDEHDNVKVASLCTPITEVDELFNPHSTKVVLNRRNYALYFSHAPIPWGRDTFSDKEN 180 (256)
T ss_dssp EEEECTTCCCCCHHHHHHHHHHHHHCC--CEEEEEEECCCHHHHTCTTSCEEEECTTSBEEEEESSCSSCCTTTTTCGGG
T ss_pred EEEEeCCcccCCHHHHHHHHHHHHhCCCCCEEEEeeEcCCHHHhhCCCccEEEECCCCEEeEEecCCCCCCCcccccccc
Confidence 99999999999999999999988653 346677776432 222 3455654321 2 222
Q ss_pred -----chhhhcCCcccChHHHHHHHHHHHhcCCCCCcHHHHH--HhCCCCeEEEecCC-CCcccCCHHHHHHHHHHh
Q 028081 139 -----TLWEMQTPQVIKPDLLKKGFELVNREGLEVTDDVSIV--EHLKHPVYITEGSY-TNIKVTTPDDLLIAERIL 207 (214)
Q Consensus 139 -----~~~~~~~p~~f~~~~l~~~~~~~~~~~~~~~d~~~~~--~~~g~~i~~v~~~~-~~~~Idtp~Dl~~a~~~~ 207 (214)
..+.+-.-|+|+...|..+.. ...+.++.++..+++ .++|.+|.++..+. .+++||||+||+.+++++
T Consensus 181 ~~~~~~~~~~~GiY~y~~~~l~~~~~-l~~s~lE~~e~leqlr~le~G~~i~~~~~~~~~~~~idtpeDl~~a~~~~ 256 (256)
T 3tqd_A 181 LQLNGSHYRHVGIYAYRVGFLEEYLS-WDACPAEKMEALEQLRILWHGGRIHMVVAKSKCPPGVDTEEDLERVRAYF 256 (256)
T ss_dssp CCCSSCCEEEEEEEEEEHHHHHHHHH-SCCCHHHHHHTCTTHHHHHTTCCCEEEECSSCCCCCCSSHHHHHHHHTTC
T ss_pred cccCCcceEEEEEEEcCHHHHHHHHh-CCCCcccchhhhHHHHHHHCCCeEEEEEeCCCCCCCcCCHHHHHHHHHhC
Confidence 122333458899887765432 211112222222333 35899999888764 579999999999998753
|
| >4fce_A Bifunctional protein GLMU; GLMU. csgid, niaid, structural genomics, national institute allergy and infectious diseases; HET: GP1; 1.96A {Yersinia pseudotuberculosis} PDB: 3fww_A 1hv9_A* 2oi5_A* 2oi6_A* 2oi7_A* 1fxj_A* 1fwy_A* | Back alignment and structure |
|---|
Probab=99.91 E-value=2e-23 Score=178.07 Aligned_cols=206 Identities=15% Similarity=0.171 Sum_probs=148.5
Q ss_pred CCCCCCceeeeeCCeehHHHHHHHHhcCCCcCeEEEEeCCCchHHHHHHHHhcCCcEEEecCCccHHHHHHHHHhhcccC
Q 028081 1 MGANMPKQYLPLLGQPIALYSFYTFSRMVEVKEIVVVCDPSYSDIFEETKEKINVDLKFSLPGKERQDSVYSGLQEVDFN 80 (214)
Q Consensus 1 m~~~~~K~l~~l~gkpli~~~i~~~~~~~~~~~iiVv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sv~~al~~~~~~ 80 (214)
|+.++||+|++++|||||+|+++++.+++ +++|+|+++++. +.+++.+..++..+..-....+..+++++|++.+. +
T Consensus 22 l~~~~pK~l~~i~g~pli~~~l~~l~~~~-~~~i~vv~~~~~-~~i~~~~~~~~~~~v~~~~~~g~~~~i~~~~~~~~-~ 98 (459)
T 4fce_A 22 MYSDLPKVLHPLAGKPMVQHVIDAAMKLG-AQHVHLVYGHGG-ELLKKTLADPSLNWVLQAEQLGTGHAMQQAAPHFA-D 98 (459)
T ss_dssp GCCSSCGGGSEETTEEHHHHHHHHHHHHT-CSCEEEEESSCH-HHHHHHC-----CEEECSSCCCHHHHHHHHGGGSC-T
T ss_pred CCCCCCcccCeeCCeeHHHHHHHHHHhCC-CCcEEEEeCCCH-HHHHHHhccCCcEEEeCCCCCCcHHHHHHHHHhcC-C
Confidence 55668999999999999999999999886 899999998875 55666655544333222223456889999999886 3
Q ss_pred CCeEEEEcCCCCCCCHHHHHHHHHHHHhcCCeEEeeeccccE----EEecCCCceeeecCccch-------hhhc-CCcc
Q 028081 81 SELVCIHDSARPLVLSKDVQKVLMDALRVGAAVLGVPAKATI----KEANSESFVVRTLDRKTL-------WEMQ-TPQV 148 (214)
Q Consensus 81 ~~~vl~~~~d~P~v~~~~i~~~i~~~~~~~~~i~~~~~~~~~----~~~~~~g~v~~~~~r~~~-------~~~~-~p~~ 148 (214)
.+.+++++||+||+++++++++++.+.+.+.++++.+..++. ...+ +|.+..+.++... +..+ .-+.
T Consensus 99 ~~~~lv~~~D~P~i~~~~i~~l~~~~~~~~~~~~~~~~~~~~~~g~v~~~-~g~v~~~~ek~~~~~~~~~~~~~~~Giy~ 177 (459)
T 4fce_A 99 DEDILMLYGDVPLISVDTLQRLLAAKPEGGIGLLTVKLDNPSGYGRIVRE-NGDVVGIVEHKDASDAQREINEINTGILV 177 (459)
T ss_dssp TSEEEEEETTCTTCCHHHHHHHHHHCCTTSEEEEEEECSCCTTSCEEEEE-TTEEEEEECGGGCCTTGGGCCEEEEEEEE
T ss_pred CCcEEEEeCCcccCCHHHHHHHHHHHhhCCEEEEEEecCCCCcccEEEeC-CCcEEEEEECCCCChHHhhccEEEEEEEE
Confidence 589999999999999999999999876666677777776652 1223 4666655443211 1111 1356
Q ss_pred cChHHHHHHHHHHH----hcCCCCCcHHHHHHhCCCCeEEEecC--CCCcccCCHHHHHHHHHHhhcc
Q 028081 149 IKPDLLKKGFELVN----REGLEVTDDVSIVEHLKHPVYITEGS--YTNIKVTTPDDLLIAERILNLS 210 (214)
Q Consensus 149 f~~~~l~~~~~~~~----~~~~~~~d~~~~~~~~g~~i~~v~~~--~~~~~Idtp~Dl~~a~~~~~~~ 210 (214)
|+...|.+++.... ...++++|....+...|.++..+..+ ..+++||||+||..|+.+++.+
T Consensus 178 ~~~~~l~~~l~~~~~~~~~~~~~~~d~~~~~~~~g~~v~~~~~~~~~~~~~I~tp~Dl~~ae~~l~~~ 245 (459)
T 4fce_A 178 ANGRDLKRWLSLLDNNNAQGEFYITDIIALAHADGKKIATVHPTRLSEVEGVNNRLQLSALERVFQTE 245 (459)
T ss_dssp EEHHHHHHHHHTCCCCSTTCSCCTTHHHHHHHHTTCCEEEECCSSGGGGCCCSSHHHHHHHHHHHHHH
T ss_pred EEHHHHHHHHHHhCccccCCcEEHHHHHHHHHHCCCeEEEEEcCCHHHhhCCCCHHHHHHHHHHHHHH
Confidence 77776666554421 22367888888888889999988776 4679999999999999988755
|
| >3oam_A 3-deoxy-manno-octulosonate cytidylyltransferase; center for structural genomics of infectious diseases; 1.75A {Vibrio cholerae o1 biovar el tor} SCOP: c.68.1.13 | Back alignment and structure |
|---|
Probab=99.90 E-value=7.2e-23 Score=161.99 Aligned_cols=202 Identities=13% Similarity=0.196 Sum_probs=135.4
Q ss_pred CC-ceeeeeCCeehHHHHHHHHhcCCCcCeEEEEeCCCchHHHHHHHHhcCCcEEEecC-CccHHHHHHHHHhhcc-cCC
Q 028081 5 MP-KQYLPLLGQPIALYSFYTFSRMVEVKEIVVVCDPSYSDIFEETKEKINVDLKFSLP-GKERQDSVYSGLQEVD-FNS 81 (214)
Q Consensus 5 ~~-K~l~~l~gkpli~~~i~~~~~~~~~~~iiVv~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~sv~~al~~~~-~~~ 81 (214)
.| |+|++++|||||+|+++++.+++ +++|+|++++ +.+++.+..+|..+.+... .....+.+..++..+. .+.
T Consensus 16 lp~K~L~~i~GkPli~~~l~~l~~~~-~~~ivVv~~~---~~i~~~~~~~g~~v~~~~~~~~~Gt~~~~~~~~~l~~~~~ 91 (252)
T 3oam_A 16 LPGKPLADIGGKPMIQWVYEQAMQAG-ADRVIIATDD---ERVEQAVQAFGGVVCMTSPNHQSGTERLAEVVAKMAIPAD 91 (252)
T ss_dssp STTGGGCEETTEEHHHHHHHHHHHTT-CSEEEEEESC---HHHHHHHHHTTCEEEECCTTCCSHHHHHHHHHHHTTCCTT
T ss_pred CCCcceeeECCEEHHHHHHHHHHhCC-CCeEEEECCH---HHHHHHHHHcCCEEEEcCCCCCCcHHHHHHHHHhcCcCCC
Confidence 45 99999999999999999999886 8999999975 3467777777766655422 1122344667777663 136
Q ss_pred CeEEEEcCCCCCCCHHHHHHHHHHHHhc--CCeEEeeecccc--------EE-EecCCCceee-----ec-Cccc-----
Q 028081 82 ELVCIHDSARPLVLSKDVQKVLMDALRV--GAAVLGVPAKAT--------IK-EANSESFVVR-----TL-DRKT----- 139 (214)
Q Consensus 82 ~~vl~~~~d~P~v~~~~i~~~i~~~~~~--~~~i~~~~~~~~--------~~-~~~~~g~v~~-----~~-~r~~----- 139 (214)
+.+++++||+||+++++|+++++.+.+. +.++++.++.++ .+ ..+++|.+.. ++ .|..
T Consensus 92 d~vlv~~gD~Pli~~~~i~~l~~~~~~~~~~~~~~~~~v~~~~~~~~p~~g~vv~d~~g~v~~fsr~~i~~~~~~~~~~~ 171 (252)
T 3oam_A 92 HIVVNVQGDEPLIPPAIIRQVADNLAACSAPMATLAVEIEDEAEVFNPNAVKVITDKSGYALYFSRATIPWDRDNFAKAD 171 (252)
T ss_dssp SEEEECCTTCTTCCHHHHHHHHHHHHHSSCSEEEEEEEECCHHHHTCTTSCEEEECTTSBEEEEESSCSSCCHHHHHSSS
T ss_pred CEEEEEeCCeeecCHHHHHHHHHHHHhcCCCEEEEeeecCCHHHhhCCCceEEEECCCCeEEEEeCCCCCCCCCcccccc
Confidence 8999999999999999999999988654 346667777653 12 2345566544 21 1211
Q ss_pred ------hhhhcCCcccChHHHHHHHHHHHhcCCCCCcHHHHH--HhCCCCeEEEe-cCCCCcccCCHHHHHHHHHHhhcc
Q 028081 140 ------LWEMQTPQVIKPDLLKKGFELVNREGLEVTDDVSIV--EHLKHPVYITE-GSYTNIKVTTPDDLLIAERILNLS 210 (214)
Q Consensus 140 ------~~~~~~p~~f~~~~l~~~~~~~~~~~~~~~d~~~~~--~~~g~~i~~v~-~~~~~~~Idtp~Dl~~a~~~~~~~ 210 (214)
.+..-..|+|+.+.|..+.... .+.++.++..+.+ .+.|.+|.++. .+..+++||||+||+.|+++++.|
T Consensus 172 ~~~~~~~~~n~GiY~~~~~~l~~~~~~~-~~~~e~~E~le~lr~l~~G~~i~~~~~~~~~~~~idt~~dl~~a~~~~~~r 250 (252)
T 3oam_A 172 KAIVQPLLRHIGIYAYRAGFINTYLDWQ-PSQLEKIECLEQLRVLWHGEKIHVAVALEAPPAGVDTPEDLEVVRRIVAER 250 (252)
T ss_dssp CCCCSCEEEEEEEEEEETTHHHHHHHSC-CCHHHHHHTCTTHHHHHTTCCEEEEECSSCCCCCCCSHHHHHHHHHHHHHT
T ss_pred ccccccceEEEEEEEcCHHHHHHHHcCC-CCcccccchhHHHHHHHCCCeEEEEEecCCCCCCCCCHHHHHHHHHHHHhh
Confidence 1122235889988777654321 0001111111222 34689999864 456789999999999999999876
Q ss_pred c
Q 028081 211 S 211 (214)
Q Consensus 211 ~ 211 (214)
.
T Consensus 251 ~ 251 (252)
T 3oam_A 251 A 251 (252)
T ss_dssp T
T ss_pred c
Confidence 3
|
| >2v0h_A Bifunctional protein GLMU; cell WALL, magnesium, cell shape, transferase, peptidoglycan synthesis, associative mechanism; 1.79A {Haemophilus influenzae} PDB: 2v0i_A* 2v0j_A* 2v0k_A* 2v0l_A* 2vd4_A* 2w0v_A* 2w0w_A* 3twd_A* | Back alignment and structure |
|---|
Probab=99.88 E-value=8.3e-22 Score=167.96 Aligned_cols=206 Identities=16% Similarity=0.150 Sum_probs=145.4
Q ss_pred CCCCCCceeeeeCCeehHHHHHHHHhcCCCcCeEEEEeCCCchHHHHHHHHhcCCcEEEecCCccHHHHHHHHHhhcccC
Q 028081 1 MGANMPKQYLPLLGQPIALYSFYTFSRMVEVKEIVVVCDPSYSDIFEETKEKINVDLKFSLPGKERQDSVYSGLQEVDFN 80 (214)
Q Consensus 1 m~~~~~K~l~~l~gkpli~~~i~~~~~~~~~~~iiVv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sv~~al~~~~~~ 80 (214)
|+++.||+|++++|||||+|+++++..++ +++|+|++++.. +.+.+.+..++..+..-....+..+++++|++.+..
T Consensus 19 l~~~~pK~l~~i~gkpli~~~l~~l~~~~-~~~iivv~~~~~-~~i~~~~~~~~~~~v~~~~~~g~~~~~~~~~~~~~~- 95 (456)
T 2v0h_A 19 MYSDLPKVLHTIAGKPMVKHVIDTAHQLG-SENIHLIYGHGG-DLMRTHLANEQVNWVLQTEQLGTAHAVQQAAPFFKD- 95 (456)
T ss_dssp GCSSSCGGGSEETTEEHHHHHHHHHHHTT-CSCEEEEECTTH-HHHHHHTTTCCCEEEECSCCCCHHHHHHHHGGGCCT-
T ss_pred cCCCCCccccEECCccHHHHHHHHHHhCC-CCcEEEEeCCCH-HHHHHHhhcCCcEEEeCCCCCCcHHHHHHHHHhcCC-
Confidence 45567999999999999999999999886 899999999864 445555544433222222233567899999988752
Q ss_pred CCeEEEEcCCCCCCCHHHHHHHHHHHHhcCCeEEeeeccccE----EEecCCCceeeecCccch-------hhhcC-Ccc
Q 028081 81 SELVCIHDSARPLVLSKDVQKVLMDALRVGAAVLGVPAKATI----KEANSESFVVRTLDRKTL-------WEMQT-PQV 148 (214)
Q Consensus 81 ~~~vl~~~~d~P~v~~~~i~~~i~~~~~~~~~i~~~~~~~~~----~~~~~~g~v~~~~~r~~~-------~~~~~-p~~ 148 (214)
.+.+++++||+||+++++++++++.+.+.+.++++.+..++. ...+ +|.+..+.++... +..++ ++.
T Consensus 96 ~~~vlv~~~D~P~i~~~~i~~l~~~~~~~~~~~~~~~~~~~~~~g~v~~~-~g~v~~~~ek~~~~~~~~~~~~~~~Giy~ 174 (456)
T 2v0h_A 96 NENIVVLYGDAPLITKETLEKLIEAKPENGIALLTVNLDNPTGYGRIIRE-NGNVVAIVEQKDANAEQLNIKEVNTGVMV 174 (456)
T ss_dssp TSEEEEEETTCTTCCHHHHHHHHHHCCTTSEEEEEEECSSCTTSCEEEEE-TTEEEEEECTTTCCHHHHTCCEEEEEEEE
T ss_pred CCeEEEEcCCcceeCHHHHHHHHHHHhcCCEEEEEeecCCCCccceEEEc-CCcEEEEEECCCCChhHhcCcEEEEEEEE
Confidence 578999999999999999999998875544455566665542 1123 4666555443221 22233 688
Q ss_pred cChHHHHHHHHHHHh----cCCCCCcHHHHHHhCCCCeEEEecC--CCCcccCCHHHHHHHHHHhhcc
Q 028081 149 IKPDLLKKGFELVNR----EGLEVTDDVSIVEHLKHPVYITEGS--YTNIKVTTPDDLLIAERILNLS 210 (214)
Q Consensus 149 f~~~~l~~~~~~~~~----~~~~~~d~~~~~~~~g~~i~~v~~~--~~~~~Idtp~Dl~~a~~~~~~~ 210 (214)
|+.+.|.++++.... ..++++|....+...|.++..+..+ ..+++||||+||..++.++..+
T Consensus 175 ~~~~~l~~~l~~~~~~~~~~~~~~~d~~~~~~~~g~~v~~~~~~~~~~~~~I~tpeDl~~a~~~l~~~ 242 (456)
T 2v0h_A 175 SDGASFKKWLARVGNNNAQGEYYLTDLIALANQDNCQVVAVQATDVMEVEGANNRLQLAALERYFQNK 242 (456)
T ss_dssp EEHHHHHHHHTTCCCCSTTCCCCGGGHHHHHHHTTCCEEEEECSCTGGGCCCSSHHHHHHHHHHHHHH
T ss_pred EEHHHHHHHHHHhccccccccEEHHHHHHHHHHcCCEEEEEEeCCcceEEeCCCHHHHHHHHHHHHHH
Confidence 988777666543221 2356788777788888889887763 3578999999999999887643
|
| >2waw_A MOBA relate protein; unknown function; HET: PGE; 1.60A {Mycobacterium SP} | Back alignment and structure |
|---|
Probab=99.88 E-value=7.7e-22 Score=150.19 Aligned_cols=174 Identities=20% Similarity=0.136 Sum_probs=123.7
Q ss_pred CCceeeeeCCeehHHHHHHHHhcCCCcCeEEEEeCCCchHHHHHHHHhcCCcEEEecCC-ccHHHHHHHHHhhcccCCCe
Q 028081 5 MPKQYLPLLGQPIALYSFYTFSRMVEVKEIVVVCDPSYSDIFEETKEKINVDLKFSLPG-KERQDSVYSGLQEVDFNSEL 83 (214)
Q Consensus 5 ~~K~l~~l~gkpli~~~i~~~~~~~~~~~iiVv~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~sv~~al~~~~~~~~~ 83 (214)
.||+|++++|+|||+|+++++..++ +++|+|+++++. +.+.+.+..++..+....++ .++.+++..|+..+..+.+.
T Consensus 21 ~~K~l~~~~g~pli~~~l~~l~~~~-~~~i~vv~~~~~-~~~~~~~~~~~~~~~~~~~~~~g~~~~i~~al~~~~~~~~~ 98 (199)
T 2waw_A 21 TPKQLLPLGDTTLLGATLAMARRCP-FDQLIVTLGGAA-DEVLEKVELDGLDIVLVDDAGLGCSSSLKSALTWVDPTAEG 98 (199)
T ss_dssp SCGGGCEETTEEHHHHHHHHHHTSS-CSEEEEEECTTH-HHHHHHSCCTTSEEEECCCCCTTCCCHHHHHHHTSCTTCSE
T ss_pred CCEEeCEeCccCHHHHHHHHHHhCC-CCcEEEEeCCCH-HHHHHHhccCCCEEEECCCcccCHHHHHHHHHHhhhccCCe
Confidence 6899999999999999999999886 899999998764 44555555555444332332 34478899999988423688
Q ss_pred EEEEcCCCCCCCHHHHHHHHHHHHhcCCeEEeeeccccEEEecCCCceeeecCccchhhhcCCcccChHHHHHHHHHHHh
Q 028081 84 VCIHDSARPLVLSKDVQKVLMDALRVGAAVLGVPAKATIKEANSESFVVRTLDRKTLWEMQTPQVIKPDLLKKGFELVNR 163 (214)
Q Consensus 84 vl~~~~d~P~v~~~~i~~~i~~~~~~~~~i~~~~~~~~~~~~~~~g~v~~~~~r~~~~~~~~p~~f~~~~l~~~~~~~~~ 163 (214)
+++++||+||+++++++++++. . .++.+ +.+..+ |.- .+|+.|+++.+..+...
T Consensus 99 vlv~~~D~P~~~~~~i~~l~~~-~-~~~~~-~~~~~~--------g~~------------~~P~~~~~~~l~~~~~~--- 152 (199)
T 2waw_A 99 IVLMLGDQPGITASAVASLIAG-G-RGATI-AVCEYA--------NGI------------GHPFWVSRGVFGDLAEL--- 152 (199)
T ss_dssp EEEEETTCTTCCHHHHHHHHHH-H-TTCSE-EEEEET--------TEE------------EEEEEEEGGGHHHHHTC---
T ss_pred EEEEeCCcccCCHHHHHHHHhh-c-CCCCE-EEEecC--------Ccc------------cCCEEEcHHHHHHHHhc---
Confidence 9999999999999999999987 3 33322 222221 210 14677887766655421
Q ss_pred cCCCCCcHHHHHHhCCCCeEEEecC-CCCcccCCHHHHHHHHHHhh
Q 028081 164 EGLEVTDDVSIVEHLKHPVYITEGS-YTNIKVTTPDDLLIAERILN 208 (214)
Q Consensus 164 ~~~~~~d~~~~~~~~g~~i~~v~~~-~~~~~Idtp~Dl~~a~~~~~ 208 (214)
.+ -.+...++++.|.++..++.+ ..++|||||+||..++.+++
T Consensus 153 ~~--~~~~~~~l~~~~~~v~~~~~~~~~~~dIdtpeDl~~~~~~~~ 196 (199)
T 2waw_A 153 HG--DKGVWRLIESGRHGVRRIRVDADVPLDVDTWDDYERLLASVV 196 (199)
T ss_dssp SS--TTCHHHHHHSSSSCEEEEECSSCCCCCCSSHHHHHHHHHHHH
T ss_pred CC--CHHHHHHHHhCcccEEEEEcCcccccCCCCHHHHHHHHHHHh
Confidence 11 123455666777788877764 47899999999999998875
|
| >1hm9_A GLMU, UDP-N-acetylglucosamine-1-phosphate uridyltransfe; acetyltransferase, bifunctional, drug design; HET: ACO UD1; 1.75A {Streptococcus pneumoniae} SCOP: b.81.1.4 c.68.1.5 PDB: 1hm8_A* 1hm0_A* 4ac3_A* 4aaw_A* 1g97_A* 1g95_A* | Back alignment and structure |
|---|
Probab=99.88 E-value=1.6e-21 Score=166.82 Aligned_cols=205 Identities=15% Similarity=0.142 Sum_probs=143.3
Q ss_pred CCCCCCceeeeeCCeehHHHHHHHHhcCCCcCeEEEEeCCCchHHHHHHHHhcCCcEEEecC--CccHHHHHHHHHhhcc
Q 028081 1 MGANMPKQYLPLLGQPIALYSFYTFSRMVEVKEIVVVCDPSYSDIFEETKEKINVDLKFSLP--GKERQDSVYSGLQEVD 78 (214)
Q Consensus 1 m~~~~~K~l~~l~gkpli~~~i~~~~~~~~~~~iiVv~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~sv~~al~~~~ 78 (214)
|+.++||+|++++|||||+|+++++.+++ +++|+|++++.. +.+.+.+.. .+.++.+ ..++.++++.|++.+.
T Consensus 25 ~~~~~pK~l~~i~gkpli~~~l~~l~~~g-~~~iivv~~~~~-~~i~~~~~~---~i~~v~~~~~~G~~~sl~~a~~~~~ 99 (468)
T 1hm9_A 25 MKSDLPKVLHKVAGISMLEHVFRSVGAIQ-PEKTVTVVGHKA-ELVEEVLAG---QTEFVTQSEQLGTGHAVMMTEPILE 99 (468)
T ss_dssp GCCSSCGGGSEETTEEHHHHHHHHHHTTC-CSEEEEEECTTH-HHHHHSSSS---SSEEEECSSCCCHHHHHHTTHHHHT
T ss_pred CCCCCCcEeeEECCccHHHHHHHHHHhcC-CCCEEEEECCCH-HHHHHHhCC---CcEEEeCCccCChHHHHHHHHHHhc
Confidence 45567999999999999999999999885 899999998864 344443322 2333322 3356888999998875
Q ss_pred cCCCeEEEEcCCCCCCCHHHHHHHHHHHHhcC--CeEEeeeccccE----EEecCCCceeeecCccc--------hhhhc
Q 028081 79 FNSELVCIHDSARPLVLSKDVQKVLMDALRVG--AAVLGVPAKATI----KEANSESFVVRTLDRKT--------LWEMQ 144 (214)
Q Consensus 79 ~~~~~vl~~~~d~P~v~~~~i~~~i~~~~~~~--~~i~~~~~~~~~----~~~~~~g~v~~~~~r~~--------~~~~~ 144 (214)
...+.+++++||+||+++++++++++.+.+.+ .++.+.+..++. ...+++|.+..+.++.. .+...
T Consensus 100 ~~~~~vlv~~~D~P~i~~~~i~~l~~~~~~~~~~~~i~~~~~~~~~~~g~v~~d~~g~v~~~~ek~~~~~~~~~~~~~~~ 179 (468)
T 1hm9_A 100 GLSGHTLVIAGDTPLITGESLKNLIDFHINHKNVATILTAETDNPFGYGRIVRNDNAEVLRIVEQKDATDFEKQIKEINT 179 (468)
T ss_dssp TCCSEEEEEETTCTTCCHHHHHHHHHHHHHTTCSEEEEEEECSCCTTSCEEEECTTCCEEEEECTTTCCTTGGGCCEEEE
T ss_pred cCCCeEEEEeCCccccCHHHHHHHHHHHHhcCCcEEEEEeccCCCCceeEEEECCCCCEEEEEECCCCChHHhcCeEEEE
Confidence 33578999999999999999999999886544 345555665542 22344566665544311 12233
Q ss_pred CCcccChHHHHHHHHHHHhc----CCCCCcHHHHHHhCCCCeEEEecC--CCCcccCCHHHHHHHHHHhhcc
Q 028081 145 TPQVIKPDLLKKGFELVNRE----GLEVTDDVSIVEHLKHPVYITEGS--YTNIKVTTPDDLLIAERILNLS 210 (214)
Q Consensus 145 ~p~~f~~~~l~~~~~~~~~~----~~~~~d~~~~~~~~g~~i~~v~~~--~~~~~Idtp~Dl~~a~~~~~~~ 210 (214)
.++.|+.+.|.+++...... .++++|....+...|.++..+..+ ...++||||+||..++.++..+
T Consensus 180 Giy~f~~~~l~~~l~~~~~~~~~~~~~~~d~~~~l~~~g~~v~~~~~~g~~~~i~i~t~~dl~~a~~~~~~~ 251 (468)
T 1hm9_A 180 GTYVFDNERLFEALKNINTNNAQGEYYITDVIGIFRETGEKVGAYTLKDFDESLGVNDRVALATAESVMRRR 251 (468)
T ss_dssp EEEEEEHHHHHHHHTTCCSCSTTCSCCTTHHHHHHHHHTCCEEEEECSSGGGGCCCCSHHHHHHHHHHHHHH
T ss_pred EEEEEEHHHHHHHHHhhccccCCCeEEHHHHHHHHHHCCCEEEEEEcCChHHhhCCCCHHHHHHHHHHHHHH
Confidence 57899988776665432221 256787777777778888876544 3457799999999999877543
|
| >1vic_A 3-deoxy-manno-octulosonate cytidylyltransferase; structural genomics; 1.80A {Haemophilus influenzae} SCOP: c.68.1.13 PDB: 1vh3_A 3duv_A* | Back alignment and structure |
|---|
Probab=99.86 E-value=9e-21 Score=150.67 Aligned_cols=199 Identities=13% Similarity=0.213 Sum_probs=126.1
Q ss_pred CceeeeeCCeehHHHHHHHHhcCCCcCeEEEEeCCCchHHHHHHHHhcCCcEEEec-CCccHHHHHHHHHhhccc-CCCe
Q 028081 6 PKQYLPLLGQPIALYSFYTFSRMVEVKEIVVVCDPSYSDIFEETKEKINVDLKFSL-PGKERQDSVYSGLQEVDF-NSEL 83 (214)
Q Consensus 6 ~K~l~~l~gkpli~~~i~~~~~~~~~~~iiVv~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~sv~~al~~~~~-~~~~ 83 (214)
+|+|++++|||||+|+++++.+++ +++|+|+++++ .+.+.+..++..+.... ......+++..++..+.. ..+.
T Consensus 18 ~K~l~~~~gkpli~~~l~~l~~~~-~~~ivvv~~~~---~i~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~ 93 (262)
T 1vic_A 18 GKPLADIKGKPMIQHVFEKALQSG-ASRVIIATDNE---NVADVAKSFGAEVCMTSVNHNSGTERLAEVVEKLAIPDNEI 93 (262)
T ss_dssp TGGGCEETTEEHHHHHHHHHHHTT-CSEEEEEESCH---HHHHHHHHTTCEEEECCCSSCCHHHHHHHHHHHTTCCTTCE
T ss_pred CCccccCCCeEHHHHHHHHHHhCC-CceEEEECCcH---HHHHHHHhcCCEEEECCccccCChHHHHHHHHHhccCCCCE
Confidence 499999999999999999999886 59999999864 35566666665543221 111112233334444421 3578
Q ss_pred EEEEcCCCCCCCHHHHHHHHHHHHhc--CCeEEeeecccc--------EEEe-cCCCceeee----c--Cccchh-----
Q 028081 84 VCIHDSARPLVLSKDVQKVLMDALRV--GAAVLGVPAKAT--------IKEA-NSESFVVRT----L--DRKTLW----- 141 (214)
Q Consensus 84 vl~~~~d~P~v~~~~i~~~i~~~~~~--~~~i~~~~~~~~--------~~~~-~~~g~v~~~----~--~r~~~~----- 141 (214)
+++++||+||+++++|+++++.+... ++++++.+..++ .+.+ +++|.+... . +|+. +
T Consensus 94 vlv~~~D~P~i~~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~v~~f~~~~~~~~r~~-~~~~~~ 172 (262)
T 1vic_A 94 IVNIQGDEPLIPPVIVRQVADNLAKFNVNMASLAVKIHDAEELFNPNAVKVLTDKDGYVLYFSRSVIPYDRDQ-FMNLQD 172 (262)
T ss_dssp EEECCTTCTTCCHHHHHHHHHHHHHHTCSEEEEEEECCCHHHHTCTTSCEEEECTTSBEEEEESSCSSCCHHH-HTTCSC
T ss_pred EEEEeCCcCccCHHHHHHHHHHHHhcCCCEEEEEEecCCHHHhcCCCceEEEECCCCCEeeeecCCCCcCCcc-cccccc
Confidence 99999999999999999999987654 446777787663 2222 445655321 1 1322 1
Q ss_pred --hhcCCc---------ccChHHHHHHHHHHH---hcCCCCCcHHHHHHhCCCCeEEEecC-CCCcccCCHHHHHHHHHH
Q 028081 142 --EMQTPQ---------VIKPDLLKKGFELVN---REGLEVTDDVSIVEHLKHPVYITEGS-YTNIKVTTPDDLLIAERI 206 (214)
Q Consensus 142 --~~~~p~---------~f~~~~l~~~~~~~~---~~~~~~~d~~~~~~~~g~~i~~v~~~-~~~~~Idtp~Dl~~a~~~ 206 (214)
..++|+ +|+...+........ .....+.. .. +...|.++..+..+ ..++|||||+||..|+.+
T Consensus 173 ~~~~~~p~~~~~~~giy~~~~~~l~~~~~~~~~~~~~~e~~~~-~~-~l~~g~~v~~~~~~~~~~~dI~tpeDl~~a~~~ 250 (262)
T 1vic_A 173 VQKVQLSDAYLRHIGIYAYRAGFIKQYVQWAPTQLENLEKLEQ-LR-VLYNGERIHVELAKEVPAVGVDTAEDLEKVRAI 250 (262)
T ss_dssp GGGCCCCTTCEEEEEEEEEEHHHHHHHHHSCCCHHHHHHTCTT-HH-HHHTTCCEEEEECSSCCCCCCCSHHHHHHHHHH
T ss_pred ccccccccceEEEEEEEEeeHHHHHHHHhCCCCchhhhhhHHH-HH-HHHCCCeEEEEEeCCCCCCCCCCHHHHHHHHHH
Confidence 225563 555555543211000 00001111 11 23458899988887 789999999999999999
Q ss_pred hhccc
Q 028081 207 LNLSS 211 (214)
Q Consensus 207 ~~~~~ 211 (214)
++.+.
T Consensus 251 l~~~~ 255 (262)
T 1vic_A 251 LAANG 255 (262)
T ss_dssp HHHTC
T ss_pred HHhcC
Confidence 87553
|
| >2y6p_A 3-deoxy-manno-octulosonate cytidylyltransferase; lipid A; HET: CTP; 2.10A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=99.86 E-value=7.6e-21 Score=148.38 Aligned_cols=194 Identities=15% Similarity=0.168 Sum_probs=126.6
Q ss_pred CceeeeeCCeehHHHHHHHHhcCCCcCeEEEEeCCCchHHHHHHHHhcCCcEEEecC-CccHHHHHHHHHhhcccCCCeE
Q 028081 6 PKQYLPLLGQPIALYSFYTFSRMVEVKEIVVVCDPSYSDIFEETKEKINVDLKFSLP-GKERQDSVYSGLQEVDFNSELV 84 (214)
Q Consensus 6 ~K~l~~l~gkpli~~~i~~~~~~~~~~~iiVv~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~sv~~al~~~~~~~~~v 84 (214)
||+|++++|||||+|+++++.++ +++|+|+++++ .+.+.+..+ ..+.+... .....+++..|++.+. .+.+
T Consensus 18 ~K~l~~i~g~pli~~~l~~~~~~--~~~i~v~~~~~---~i~~~~~~~-~~~~~~~~~~~~g~~~~~~~~~~~~--~~~v 89 (234)
T 2y6p_A 18 EKPLKNLLGKPLIRWVVEGLVKT--GERVILATDSE---RVKEVVEDL-CEVFLTPSDLPSGSDRVLYVVRDLD--VDLI 89 (234)
T ss_dssp TGGGCEETTEEHHHHHHHHHHTT--TSCEEEEESCH---HHHHHHTTT-SEEEECCTTCCSHHHHHHHHHTTCC--CSEE
T ss_pred CCcceeECCEEHHHHHHHHHHHh--CCEEEEECChH---HHHHHHHhc-eEEEECCcccccchHHHHHHHHhCC--CCEE
Confidence 89999999999999999999887 79999999873 355555554 44433321 1223444556776664 5789
Q ss_pred EEEcCCCCCCCHHHHHHHHHHHHhcCCeEEeeecc-------ccEEE-ecCCCceeeec----C--cc----chhhhcCC
Q 028081 85 CIHDSARPLVLSKDVQKVLMDALRVGAAVLGVPAK-------ATIKE-ANSESFVVRTL----D--RK----TLWEMQTP 146 (214)
Q Consensus 85 l~~~~d~P~v~~~~i~~~i~~~~~~~~~i~~~~~~-------~~~~~-~~~~g~v~~~~----~--r~----~~~~~~~p 146 (214)
++++||+||+++++++++++.+.+.+..+++.... +..+. .+++|.+..+. + |. ..+...++
T Consensus 90 lv~~~D~P~~~~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~v~~~~e~~~~~~~~~~~~~~~~~~gi 169 (234)
T 2y6p_A 90 INYQGDEPFVYEEDIKLIFRELEKGERVVTLARKDKEAYERPEDVKVVLDREGYALYFSRSPIPYFRKNDTFYPLKHVGI 169 (234)
T ss_dssp EECCTTCCCCCHHHHHHHHHHHHHTCSEEEEEEECSGGGGCTTSCEEEECTTSBEEEEESSCCSCCSSCCSSCCEEEEEE
T ss_pred EEecCCcCcCCHHHHHHHHHHHHhCCCeEEEecCCHHHhcCCCceEEEEcCCCCEeeeecCCCCcccccccceeeEEEEE
Confidence 99999999999999999999886654433332221 22222 24456654322 1 22 13345678
Q ss_pred cccChHHHHHHHHHHHhcCCCCCcHHHH--HHhCCCCeEEEecCCCCcccCCHHHHHHHHHHhh
Q 028081 147 QVIKPDLLKKGFELVNREGLEVTDDVSI--VEHLKHPVYITEGSYTNIKVTTPDDLLIAERILN 208 (214)
Q Consensus 147 ~~f~~~~l~~~~~~~~~~~~~~~d~~~~--~~~~g~~i~~v~~~~~~~~Idtp~Dl~~a~~~~~ 208 (214)
+.|+.+.|..+.... ...+..++.... +...|.++..++.+..++|||||+||..++.+++
T Consensus 170 y~~~~~~l~~~~~~~-~~~~~~~d~~~~~~~~~~g~~v~~~~~~~~~~dI~t~~dl~~a~~~~~ 232 (234)
T 2y6p_A 170 YGFRKETLMEFGAMP-PSKLEQIEGLEQLRLLENGIKIKVLITENYYHGVDTEEDLKIVEEKLK 232 (234)
T ss_dssp EEEEHHHHHHHHHSC-CCHHHHHHTCTHHHHHHTTCCCEEEECCSCCCCCCSHHHHHHHHHHCC
T ss_pred EEcCHHHHHHHHhCC-CCccchhhHHHHHHHHHCCCeEEEEEeCCcccCCCCHHHHHHHHHHHh
Confidence 999988776644311 000001111111 2335788998888888999999999999999875
|
| >2wee_A MOBA-related protein; unknown function; 1.65A {Mycobacterium tuberculosis H37RV} PDB: 2we9_A 2yes_A | Back alignment and structure |
|---|
Probab=99.85 E-value=1.4e-20 Score=143.03 Aligned_cols=174 Identities=13% Similarity=0.077 Sum_probs=118.9
Q ss_pred CCCceeeeeCCeehHHHHHHHHhcCCCcCeEEEEeCCCchHHHHHHHHhcCCcEEEecC-CccHHHHHHHHHhhcccCCC
Q 028081 4 NMPKQYLPLLGQPIALYSFYTFSRMVEVKEIVVVCDPSYSDIFEETKEKINVDLKFSLP-GKERQDSVYSGLQEVDFNSE 82 (214)
Q Consensus 4 ~~~K~l~~l~gkpli~~~i~~~~~~~~~~~iiVv~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~sv~~al~~~~~~~~ 82 (214)
+.||+|++++|+|||+|+++++.+++ +++|+|++++.. +.+.+.+..++..+....+ ..++.+++..|++.+..+.+
T Consensus 20 g~~K~l~~~~g~pll~~~l~~l~~~~-~~~i~vv~~~~~-~~~~~~~~~~~~~~~~~~~~~~g~~~~i~~al~~~~~~~~ 97 (197)
T 2wee_A 20 GTPKQLLPYRDTTVLGATLDVARQAG-FDQLILTLGGAA-SAVRAAMALDGTDVVVVEDVERGCAASLRVALARVHPRAT 97 (197)
T ss_dssp SSCGGGSEETTEEHHHHHHHHHHHTT-CSEEEEEECTTH-HHHHHHSCCTTSEEEECC----CCHHHHHHHHTTSCTTEE
T ss_pred CCCeEcCeeCCccHHHHHHHHHHhcC-CCcEEEEeCCCH-HHHHHHhccCCCEEEECCCcccCHHHHHHHHHHHhcccCC
Confidence 36999999999999999999999886 899999998764 4455555445544332222 23468999999988742357
Q ss_pred eEEEEcCCCCCCCHHHHHHHHHHHHhcCCeEEeeeccccEEEecCCCceeeecCccchhhhcCCcccChHHHHHHHHHHH
Q 028081 83 LVCIHDSARPLVLSKDVQKVLMDALRVGAAVLGVPAKATIKEANSESFVVRTLDRKTLWEMQTPQVIKPDLLKKGFELVN 162 (214)
Q Consensus 83 ~vl~~~~d~P~v~~~~i~~~i~~~~~~~~~i~~~~~~~~~~~~~~~g~v~~~~~r~~~~~~~~p~~f~~~~l~~~~~~~~ 162 (214)
.+++++||+||+++++++++++. .. +..+ +.|.. +|.. ++|+.|++..+..+.. .
T Consensus 98 ~vlv~~~D~P~~~~~~i~~l~~~-~~-~~~i-~~~~~--------~g~~------------~~P~~~~~~~l~~l~~-~- 152 (197)
T 2wee_A 98 GIVLMLGDQPQVAPATLRRIIDV-GP-ATEI-MVCRY--------ADGV------------GHPFWFSRTVFGELAR-L- 152 (197)
T ss_dssp EEEEEETTCTTCCHHHHHHHHHH-GG-GSSE-EEEEE--------TTEE------------EEEEEEEGGGHHHHHT-C-
T ss_pred eEEEEeCCcCCCCHHHHHHHHhh-cC-CCCE-EEEec--------CCCc------------CCCEEECHHHHHHHHh-C-
Confidence 89999999999999999999987 32 2222 22322 1211 1466787766655431 1
Q ss_pred hcCCCCCcHHHHHHhCCCCeEEEecC-CCCcccCCHHHHHHHHHHh
Q 028081 163 REGLEVTDDVSIVEHLKHPVYITEGS-YTNIKVTTPDDLLIAERIL 207 (214)
Q Consensus 163 ~~~~~~~d~~~~~~~~g~~i~~v~~~-~~~~~Idtp~Dl~~a~~~~ 207 (214)
.+- .....++++.+.++..++.+ ..++|||||+||..++.++
T Consensus 153 -~~~--~~~~~~l~~~~~~v~~v~~~~~~~~dIdtpeDl~~~~~~~ 195 (197)
T 2wee_A 153 -HGD--KGVWKLVHSGRHPVRELAVDGCVPLDVDTWDDYRRLLESV 195 (197)
T ss_dssp -CST--THHHHHHHCTTSCEEEEECSSCCCCCCSSHHHHHHHHTC-
T ss_pred -CCC--hhHHHHHHhCcccEEEEEcCcccccCCCCHHHHHHHHHHh
Confidence 110 11234566667788877753 4789999999999987654
|
| >1qwj_A Cytidine monophospho-N-acetylneuraminic acid synthetase; CMP-5-N-acetylneuraminic acid synthetase, CMP-NEU5AC, sialic acid, glycosylation; HET: NCC; 2.80A {Mus musculus} SCOP: c.68.1.13 | Back alignment and structure |
|---|
Probab=99.85 E-value=1.3e-20 Score=146.83 Aligned_cols=190 Identities=13% Similarity=0.041 Sum_probs=118.4
Q ss_pred ceeeeeCCeehHHHHHHHHhcCCCcCeEEEEeCCCchHHHHHHHHhcCCcEEEec-----CCccHHHHHHHHHhhcccCC
Q 028081 7 KQYLPLLGQPIALYSFYTFSRMVEVKEIVVVCDPSYSDIFEETKEKINVDLKFSL-----PGKERQDSVYSGLQEVDFNS 81 (214)
Q Consensus 7 K~l~~l~gkpli~~~i~~~~~~~~~~~iiVv~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~sv~~al~~~~~~~ 81 (214)
|+|++++|||||+|+++++++++.+++|+|+++++ .+.+.+..++..+.... +..+..+++.+|+..+. +.
T Consensus 20 K~l~~i~Gkpli~~~i~~~~~~~~~~~ivv~~~~~---~i~~~~~~~g~~~~~~~~~~~~~~~~~~~~v~~al~~~~-~~ 95 (229)
T 1qwj_A 20 KNIKRLAGVPLIGWVLRAALDAGVFQSVWVSTDHD---EIENVAKQFGAQVHRRSSETSKDSSTSLDAIVEFLNYHN-EV 95 (229)
T ss_dssp TTTSEETTEEHHHHHHHHHHHHTCCSEEEEEESCH---HHHHHHHHTTCEEEECCGGGSSTTCCHHHHHHHHHTTCT-TC
T ss_pred cccceECCEEHHHHHHHHHHhCCCcCEEEEECChH---HHHHHHHHcCCEEEeChhhhcCCCCcHHHHHHHHHHhcC-CC
Confidence 99999999999999999999887679999999653 35666667776553321 33445688999998874 36
Q ss_pred CeEEEEcCCCCCCCHHHHHHHHHHHHhcCC--eEEeeeccccEEE-ecCCCc--eee--ecCcc-chhhhcCCcccChHH
Q 028081 82 ELVCIHDSARPLVLSKDVQKVLMDALRVGA--AVLGVPAKATIKE-ANSESF--VVR--TLDRK-TLWEMQTPQVIKPDL 153 (214)
Q Consensus 82 ~~vl~~~~d~P~v~~~~i~~~i~~~~~~~~--~i~~~~~~~~~~~-~~~~g~--v~~--~~~r~-~~~~~~~p~~f~~~~ 153 (214)
|.+++++||+||+++++|+++++.+...++ ++++.+..++.+. +. +|. +.+ +.... .-...+.|..+.
T Consensus 96 d~vlv~~~D~Pli~~~~i~~l~~~~~~~~~~~~~~~~~~~~p~~~~v~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~--- 171 (229)
T 1qwj_A 96 DIVGNIQATSPCLHPTDLQKVAEMIREEGYDSVFSVVRRHQFRWSEIQ-KGVREVTEPLNLNPAKRPRRQDWDGELY--- 171 (229)
T ss_dssp SEEEEECTTCTTCCHHHHHHHHHHHHSSCCSEEEEEEEECCCEECCCC-SSTTCCCCBSSSBTTBCCCTTTSCCEEE---
T ss_pred CEEEEecCCCCcCCHHHHHHHHHHHHhCCCCEEEEEeeccChhHhhcc-ccccccccccccccccccCCCCCCceEE---
Confidence 899999999999999999999998865433 4444445454332 11 111 100 00000 000001111110
Q ss_pred HHHHHHHHHhcCCCCCcHHHHHH--hCCCCeEE-EecCCCCcccCCHHHHHHHHHHhhcccC
Q 028081 154 LKKGFELVNREGLEVTDDVSIVE--HLKHPVYI-TEGSYTNIKVTTPDDLLIAERILNLSSE 212 (214)
Q Consensus 154 l~~~~~~~~~~~~~~~d~~~~~~--~~g~~i~~-v~~~~~~~~Idtp~Dl~~a~~~~~~~~~ 212 (214)
.+.|.|..+...++. ..|..+.+ +..+..++|||||+||..|+.+++....
T Consensus 172 --------~n~giY~~~~~~l~~~~~~g~~~~~~~~~~~~~~dIdt~~Dl~~a~~~~~~~~~ 225 (229)
T 1qwj_A 172 --------ENGSFYFAKRHLIEMGYLQGGKMAYYEMRAEHSVDIDVDIDWPIAEQRVLRFGY 225 (229)
T ss_dssp --------EEEEEEEEEHHHHHTTCSSCSSEEEEECCGGGCCCHHHHCSHHHHHHHHHHHSC
T ss_pred --------EeeEEEEEEHHHhccccccCCeEEEEECCcccccCCCCHHHHHHHHHHHHHhcc
Confidence 001222222111111 23566765 4444679999999999999999876543
|
| >3rsb_A Adenosylcobinamide-phosphate guanylyltransferase; pyrophosphorylase binding motif, pyrophosphorylase; HET: GTP; 2.80A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
Probab=99.84 E-value=2.8e-22 Score=152.58 Aligned_cols=111 Identities=16% Similarity=0.144 Sum_probs=82.6
Q ss_pred CCceeeeeCCeehHHHHHHHHhcCCCcCeEEEEeCCCchHHHHHHHHh-cCC--cEEEe-cCCccHHHHHHHHHhhcccC
Q 028081 5 MPKQYLPLLGQPIALYSFYTFSRMVEVKEIVVVCDPSYSDIFEETKEK-INV--DLKFS-LPGKERQDSVYSGLQEVDFN 80 (214)
Q Consensus 5 ~~K~l~~l~gkpli~~~i~~~~~~~~~~~iiVv~~~~~~~~~~~~~~~-~~~--~~~~~-~~~~~~~~sv~~al~~~~~~ 80 (214)
.||+|++++|||||+|+++++.+++ +++|+|+++++. +.+.+.+.. ++. .+.++ ..+.++.+|+.+|+..+
T Consensus 17 ~~K~l~~~~g~pli~~~l~~l~~~~-~~~v~vv~~~~~-~~i~~~~~~~~~~~~~~~~~~~~~~g~~~si~~al~~~--- 91 (196)
T 3rsb_A 17 VEKPLIKLCGRCLIDYVVSPLLKSK-VNNIFIATSPNT-PKTKEYINSAYKDYKNIVVIDTSGKGYIEDLNECIGYF--- 91 (196)
T ss_dssp SCGGGCEETTEEHHHHHHHHHHSSS-CCCEEEECCTTC-HHHHHHHHHHTTTTTEEEE--------CCCCCTTTTTC---
T ss_pred CCccEEEECCEEHHHHHHHHHHHCC-CCEEEEEeCCCh-HHHHHHHHhhccCCCCEEEEECCCCCcHHHHHHHHHhC---
Confidence 6899999999999999999999987 899999998875 456666554 321 23333 34556677788888776
Q ss_pred CCeEEEEcCCCCCCCHHHHHHHHHHHHh-------cCCeEEeeeccc
Q 028081 81 SELVCIHDSARPLVLSKDVQKVLMDALR-------VGAAVLGVPAKA 120 (214)
Q Consensus 81 ~~~vl~~~~d~P~v~~~~i~~~i~~~~~-------~~~~i~~~~~~~ 120 (214)
.+.+++++||+||+++++|+++++.+.. .+++++++|..+
T Consensus 92 ~~~vlv~~~D~P~i~~~~i~~l~~~~~~~~~~~~~~~~~~~~~p~~~ 138 (196)
T 3rsb_A 92 SEPFLVVSSDLINLKSKIINSIVDYFYCIKAKTPDVEALAVMIPKEK 138 (196)
T ss_dssp SSCEEEEETTEESCCHHHHHHHHHHHHHHHTTCC--CEEEEEEETTT
T ss_pred CCCEEEEeCCcccCCHHHHHHHHHHHHhhhcccCCCceEEEEEEccc
Confidence 4789999999999999999999998865 244566666654
|
| >3d5n_A Q97W15_sulso; NESG, SSR125, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; 2.80A {Sulfolobus solfataricus} | Back alignment and structure |
|---|
Probab=99.82 E-value=5.9e-20 Score=140.05 Aligned_cols=169 Identities=14% Similarity=0.157 Sum_probs=107.3
Q ss_pred CCceeeeeCCeehHHHHHHHHhcCCCcCeEEEEeCCCchHHHHHHHHhcCCcEEEecC-CccHHHHHHHHHhhcccCCCe
Q 028081 5 MPKQYLPLLGQPIALYSFYTFSRMVEVKEIVVVCDPSYSDIFEETKEKINVDLKFSLP-GKERQDSVYSGLQEVDFNSEL 83 (214)
Q Consensus 5 ~~K~l~~l~gkpli~~~i~~~~~~~~~~~iiVv~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~sv~~al~~~~~~~~~ 83 (214)
.||+|++++|+|||+|+++++..+ +|+||+++.. +.+.+.+. .+. +..... ..++.+|+..|++.+. +.+.
T Consensus 18 ~~K~l~~i~g~pll~~~l~~l~~~----~ivvv~~~~~-~~~~~~~~-~~~-~v~~~~~~~G~~~si~~al~~~~-~~~~ 89 (197)
T 3d5n_A 18 GDKLLAKIDNTPIIMRTIRIYGDL----EKIIIVGKYV-NEMLPLLM-DQI-VIYNPFWNEGISTSLKLGLRFFK-DYDA 89 (197)
T ss_dssp SSGGGSBSSSSBHHHHHHHHTTTS----BCCEEECTTH-HHHGGGCT-TSC-EEECTTGGGCHHHHHHHHHHHTT-TSSE
T ss_pred CCeeeCEeCceEHHHHHHHHHHhC----CEEEEECCCH-HHHHHHhc-CCE-EEECCCCCCCHHHHHHHHHHhhc-cCCc
Confidence 389999999999999999999754 7888888763 33443333 333 221111 2356899999999885 2478
Q ss_pred EEEEcCCCCCCCHHHHHHHHHHHHhcCCeEEeeeccccEEEecCCCceeeecCccchhhhcCCcccChHHHHHHHHHHHh
Q 028081 84 VCIHDSARPLVLSKDVQKVLMDALRVGAAVLGVPAKATIKEANSESFVVRTLDRKTLWEMQTPQVIKPDLLKKGFELVNR 163 (214)
Q Consensus 84 vl~~~~d~P~v~~~~i~~~i~~~~~~~~~i~~~~~~~~~~~~~~~g~v~~~~~r~~~~~~~~p~~f~~~~l~~~~~~~~~ 163 (214)
+++++||+||++++.++++++.+ ..+..+ +.|..+ |. ..+|+.|+++.+..+.. .
T Consensus 90 vlv~~~D~P~i~~~~i~~l~~~~-~~~~~~-~~~~~~--------g~------------~~~P~~~~~~~l~~l~~-l-- 144 (197)
T 3d5n_A 90 VLVALGDMPFVTKEDVNKIINTF-KPNCKA-VIPTHK--------GE------------RGNPVLISKSLFNEIEK-L-- 144 (197)
T ss_dssp EEEEETTCCCSCHHHHHHHHHTC-CTTCSE-EEEEET--------TE------------ECSCEEEEHHHHHHHHH-C--
T ss_pred EEEEeCCccccCHHHHHHHHHHh-cCCCcE-EEEEeC--------Cc------------ccCCEEECHHHHHHHHc-c--
Confidence 99999999999999999999876 333222 222211 21 12588899887766542 2
Q ss_pred cCCCCCcHHHHHHhCCCCeEEEecC--CCCcccCCHHHHHHHHHHhh
Q 028081 164 EGLEVTDDVSIVEHLKHPVYITEGS--YTNIKVTTPDDLLIAERILN 208 (214)
Q Consensus 164 ~~~~~~d~~~~~~~~g~~i~~v~~~--~~~~~Idtp~Dl~~a~~~~~ 208 (214)
.+ -++...++++.|.++..++.+ ..++|||||+||..++.++.
T Consensus 145 ~g--~~~~~~~l~~~~~~v~~v~~~~~~~~~dIdTpeDl~~~~~~~~ 189 (197)
T 3d5n_A 145 RG--DVGARVILNKIKIEELCFIECSEGVLIDIDKKEDLMRLRDFHP 189 (197)
T ss_dssp CT--TCCTHHHHTTSCGGGEEEEECCGGGTCCTTTC-----------
T ss_pred CC--CccHHHHHHhCccCeEEEEcCCCCcccCCCCHHHHHHHHHhhc
Confidence 22 134456777777777777654 35689999999999987654
|
| >1lvw_A Glucose-1-phosphate thymidylyltransferase; protein nucleotide complex, nucleotide binding fold; HET: TYD; 1.70A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: c.68.1.6 | Back alignment and structure |
|---|
Probab=99.81 E-value=7.8e-19 Score=141.76 Aligned_cols=198 Identities=16% Similarity=0.248 Sum_probs=132.6
Q ss_pred CCCceeeeeCCeehHHHHHHHHhcCCCcCeEEEEeCCCchHHHHHHHHh---cCCcEEEecC--CccHHHHHHHHHhhcc
Q 028081 4 NMPKQYLPLLGQPIALYSFYTFSRMVEVKEIVVVCDPSYSDIFEETKEK---INVDLKFSLP--GKERQDSVYSGLQEVD 78 (214)
Q Consensus 4 ~~~K~l~~l~gkpli~~~i~~~~~~~~~~~iiVv~~~~~~~~~~~~~~~---~~~~~~~~~~--~~~~~~sv~~al~~~~ 78 (214)
+.||+|++++|||||.|+++++..++ +++|+|++++...+.+++.+.+ ++.++.++.. ..+...++..|+..+.
T Consensus 23 ~~pK~llpi~gkpli~~~l~~l~~~g-i~~Iivv~~~~~~~~i~~~l~~g~~~g~~i~~~~~~~~~G~~~al~~a~~~i~ 101 (295)
T 1lvw_A 23 AVSKQLLPIYDKPMIYYPLSVLMLAG-IRDILIISTPRDLPLYRDLLGDGSQFGVRFSYRVQEEPRGIADAFIVGKDFIG 101 (295)
T ss_dssp SSCGGGSEETTEETTHHHHHHHHHTT-CCEEEEEECTTTHHHHHHHHTTSGGGTSEEEEEECSSCCCGGGHHHHTHHHHT
T ss_pred CCCceecEECCeeHHHHHHHHHHHCC-CCeEEEEeccchHHHHHHHhhhccccCceEEEeeCCCCCChHHHHHHHHHHhC
Confidence 46999999999999999999999886 8999998864433556666654 5555544432 2345778888888775
Q ss_pred cCCCeEEEEcCCCCCCCHHHHHHHHHHHHh--cCCeEEeeeccccE----EEecCCCceeeec-----CccchhhhcCCc
Q 028081 79 FNSELVCIHDSARPLVLSKDVQKVLMDALR--VGAAVLGVPAKATI----KEANSESFVVRTL-----DRKTLWEMQTPQ 147 (214)
Q Consensus 79 ~~~~~vl~~~~d~P~v~~~~i~~~i~~~~~--~~~~i~~~~~~~~~----~~~~~~g~v~~~~-----~r~~~~~~~~p~ 147 (214)
+.++++++ ||+||.+ ..+.++++.+.+ .++++.+.++.++. ...+++|.+..+. ++++ +...+++
T Consensus 102 -~~~~~lv~-gD~~~~~-~~l~~~l~~~~~~~~~~~v~~~~v~dp~~~g~v~~d~~g~v~~~~ekp~~~~s~-~~~~Giy 177 (295)
T 1lvw_A 102 -DSKVALVL-GDNVFYG-HRFSEILRRAASLEDGAVIFGYYVRDPRPFGVVEFDSEGRVISIEEKPSRPKSN-YVVPGLY 177 (295)
T ss_dssp -TSCEEEEE-TTCCEEC-TTHHHHHHHHHTCCSSEEEEEEECSCCTTSEEEEECTTSBEEEEEESCSSCSCS-EECCSEE
T ss_pred -CCcEEEEE-CCccccC-cCHHHHHHHHHHcCCCcEEEEEECCCcccCCEEEECCCCcEEEEEECCCCCCCC-EEEEEeE
Confidence 23555555 9999998 688999987743 34556677777652 1224456654332 2333 4556789
Q ss_pred ccChHHHHHHHHHHH---hcCCCCCcHHHHHHhCCCCeEE-EecCC-CCcccCCHHHHHHHHHHhh
Q 028081 148 VIKPDLLKKGFELVN---REGLEVTDDVSIVEHLKHPVYI-TEGSY-TNIKVTTPDDLLIAERILN 208 (214)
Q Consensus 148 ~f~~~~l~~~~~~~~---~~~~~~~d~~~~~~~~g~~i~~-v~~~~-~~~~Idtp~Dl~~a~~~~~ 208 (214)
.|+.+.+..+. ... +..++++|....+...| ++.+ +.... .|+||+||+||..|+.+++
T Consensus 178 ~f~~~~l~~~~-~~~~~~~ge~~~td~~~~~l~~g-~~~v~~~~~g~~w~Digt~edl~~a~~~~~ 241 (295)
T 1lvw_A 178 FYDNQVVEIAR-RIEPSDRGELEITSVNEEYLRMG-KLRVELMGRGMAWLDTGTHDGLLEASSFIE 241 (295)
T ss_dssp EECTTHHHHHH-HCCCCTTSCCCHHHHHHHHHHTT-CEEEEEECTTCEECCCSSHHHHHHHHHHHH
T ss_pred EEcHHHHHHHH-hcCCcccCceeHHHHHHHHHHcC-CcEEEEeCCCCeEEeCCCHHHHHHHHHHHH
Confidence 99987765432 211 12256676655555555 3332 33334 5999999999999998875
|
| >4ecm_A Glucose-1-phosphate thymidylyltransferase; HET: DAU; 2.30A {Bacillus anthracis} PDB: 3hl3_A* | Back alignment and structure |
|---|
Probab=99.80 E-value=1.3e-18 Score=138.69 Aligned_cols=200 Identities=12% Similarity=0.068 Sum_probs=133.9
Q ss_pred CCCceeeeeCCeehHHHHHHHHhcCCCcCeEEEEeCCCchHHHHHHHH---hcCCcEEEecC--CccHHHHHHHHHhhcc
Q 028081 4 NMPKQYLPLLGQPIALYSFYTFSRMVEVKEIVVVCDPSYSDIFEETKE---KINVDLKFSLP--GKERQDSVYSGLQEVD 78 (214)
Q Consensus 4 ~~~K~l~~l~gkpli~~~i~~~~~~~~~~~iiVv~~~~~~~~~~~~~~---~~~~~~~~~~~--~~~~~~sv~~al~~~~ 78 (214)
++||+|++++|+|||+|+++++.+++ +++|+|+++++..+.+.+.+. .++..+.++.. ..+..+++..|+..+.
T Consensus 44 ~~pK~ll~i~g~pli~~~l~~l~~~g-~~~iivv~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~G~~~al~~a~~~~~ 122 (269)
T 4ecm_A 44 VTNKHLLPVGRYPMIYHAVYKLKQCD-ITDIMIITGKEHMGDVVSFLGSGQEFGVSFTYRVQDKAGGIAQALGLCEDFVG 122 (269)
T ss_dssp SSCGGGSEETTEEHHHHHHHHHHHTT-CCEEEEEECTTTHHHHHHHHTTSGGGTCEEEEEECSSCCCHHHHHHTTHHHHT
T ss_pred CCCceecEECCEEHHHHHHHHHHHCC-CCEEEEECChhhHHHHHHHHhhccccCceEEEeeCCccCcHHHHHHHHHHhcC
Confidence 67999999999999999999999886 899999999764344555554 24445544422 3345788888888775
Q ss_pred cCCCeEEEEcCCCCCCCHHHHHHHHHHHHhc--CCeEEeeecccc----EEEecCCCceeeecCccc---hhhh-cCCcc
Q 028081 79 FNSELVCIHDSARPLVLSKDVQKVLMDALRV--GAAVLGVPAKAT----IKEANSESFVVRTLDRKT---LWEM-QTPQV 148 (214)
Q Consensus 79 ~~~~~vl~~~~d~P~v~~~~i~~~i~~~~~~--~~~i~~~~~~~~----~~~~~~~g~v~~~~~r~~---~~~~-~~p~~ 148 (214)
.+.++++.||+|+. ..++++++.+... ++++.+.++.++ ....+ +|.+..+.++.. .+.. -.-++
T Consensus 123 --~~~~lv~~~D~~~~--~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~g~v~~d-~g~v~~~~ekp~~~~~~~~~~Giy~ 197 (269)
T 4ecm_A 123 --NDRMVVILGDNIFS--DDIRPYVEEFTNQKEGAKVLLQSVDDPERFGVANIQ-NRKIIEIEEKPKEPKSSYAVTGIYL 197 (269)
T ss_dssp --TSEEEEEETTEEES--SCSHHHHHHHHTSSSSEEEEEEECSCGGGSEEEEEE-TTEEEEEEESCSSCSCSEEEEEEEE
T ss_pred --CCcEEEEeCCccCc--cCHHHHHHHHHhcCCCeEEEEEECCCCCCceEEEEc-CCEEEEEEECCCCCCCcEEEEEEEE
Confidence 47899999999985 6788999887653 345556666553 11223 355554432110 0111 12357
Q ss_pred cChHHHHHHHHHHH---hcCCCCCcHHHHHHhCCCCeEEEecCCCCcccCCHHHHHHHHHHhhccc
Q 028081 149 IKPDLLKKGFELVN---REGLEVTDDVSIVEHLKHPVYITEGSYTNIKVTTPDDLLIAERILNLSS 211 (214)
Q Consensus 149 f~~~~l~~~~~~~~---~~~~~~~d~~~~~~~~g~~i~~v~~~~~~~~Idtp~Dl~~a~~~~~~~~ 211 (214)
|+...+ ..+.... ...+++++....+...| ++..+..+..++|||||+||..|+..+....
T Consensus 198 ~~~~~l-~~l~~~~~~~~ge~~l~d~l~~l~~~g-~v~~~~~~~~~~dIgt~~dl~~a~~~l~~~~ 261 (269)
T 4ecm_A 198 YDSKVF-SYIKELKPSARGELEITDINNWYLKRG-VLTYNEMSGWWTDAGTHVSLQRANALARDIN 261 (269)
T ss_dssp ECTTHH-HHHTSCCBCTTSCBCHHHHHHHHHHTT-CEEEEECCSCEEECSSHHHHHHHHHHTTTCC
T ss_pred ECHHHH-HhhhhcCCCCCCeeeHHHHHHHHHHcC-CEEEEEeCCEEEeCCCHHHHHHHHHHHHhcc
Confidence 887655 3333221 12255666655566666 7777777778999999999999999987654
|
| >3ngw_A Molybdopterin-guanine dinucleotide biosynthesis P (MOBA); alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; 2.31A {Archaeoglobus fulgidus} | Back alignment and structure |
|---|
Probab=99.79 E-value=6e-18 Score=129.91 Aligned_cols=170 Identities=18% Similarity=0.278 Sum_probs=109.1
Q ss_pred CCceeeeeCCeehHHHHHHHHhcCCCcCeEEEEeCCCchHHHHHHHHhcCCcEEEe-cCCccHHHHHHHHHhhcccCCCe
Q 028081 5 MPKQYLPLLGQPIALYSFYTFSRMVEVKEIVVVCDPSYSDIFEETKEKINVDLKFS-LPGKERQDSVYSGLQEVDFNSEL 83 (214)
Q Consensus 5 ~~K~l~~l~gkpli~~~i~~~~~~~~~~~iiVv~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~sv~~al~~~~~~~~~ 83 (214)
.||+|++++|+|||+|+++++..+ +|+||+++. +.+..+...++..+... ..+.++.+|+..|++++ .++
T Consensus 16 ~~K~ll~~~G~pli~~~~~~l~~~----~vvvv~~~~--~~~~~~~~~~~~~~v~d~~~~~G~~~si~~gl~~~---~~~ 86 (208)
T 3ngw_A 16 MEKTEVMLCGKKLIEWVLEKYSPF----QTVFVCRDE--KQAEKLSSRYEAEFIWDLHKGVGSIAGIHAALRHF---GSC 86 (208)
T ss_dssp SCGGGCEETTEEHHHHHHHHHTTS----EEEEECSSH--HHHHHHHTTSCSCEECCTTCCCSHHHHHHHHHHHH---SSE
T ss_pred CCCcccEECCeeHHHHHHHHhcCC----CEEEEECCH--HHHHHHHHhcCCeEEecCCCCCChHHHHHHHHHHc---CCC
Confidence 699999999999999999999854 899998753 33444444455443221 12457899999999988 478
Q ss_pred EEEEcCCCCCCCHHHHHHHHHHHHhcCCeEEeeeccccEEEecCCCceeeecCccchhhhcCCc--ccChHHHHHHHHHH
Q 028081 84 VCIHDSARPLVLSKDVQKVLMDALRVGAAVLGVPAKATIKEANSESFVVRTLDRKTLWEMQTPQ--VIKPDLLKKGFELV 161 (214)
Q Consensus 84 vl~~~~d~P~v~~~~i~~~i~~~~~~~~~i~~~~~~~~~~~~~~~g~v~~~~~r~~~~~~~~p~--~f~~~~l~~~~~~~ 161 (214)
+ +++||+||+++++|+++++.+...+..+. .|. + |.. .|- .|++..+..+....
T Consensus 87 v-v~~~D~P~i~~~~i~~l~~~~~~~~~~~v-~~~-~--------g~~-------------~Pl~al~~~~~~~~l~~~l 142 (208)
T 3ngw_A 87 V-VAAIDMPFVKPEVLEHLYKEGEKAGCDAL-IPK-H--------DYP-------------EPLLAYYAESAADELERAI 142 (208)
T ss_dssp E-EEETTCTTCCHHHHHHHHHHHHHHTCSEE-EEE-S--------SSB-------------CTTEEEECGGGHHHHHHHH
T ss_pred E-EEECCccCCCHHHHHHHHHHhhcCCCCEE-EEc-C--------CCe-------------eEEEEEEcHHHHHHHHHHH
Confidence 8 99999999999999999998764222221 222 2 110 232 25554444332222
Q ss_pred HhcCCCCCcHHHHHHhCCCCeEEEecC---------CCCcccCCHHHHHHHHHHhhcccC
Q 028081 162 NREGLEVTDDVSIVEHLKHPVYITEGS---------YTNIKVTTPDDLLIAERILNLSSE 212 (214)
Q Consensus 162 ~~~~~~~~d~~~~~~~~g~~i~~v~~~---------~~~~~Idtp~Dl~~a~~~~~~~~~ 212 (214)
..|-. ....++++.+ +..+..+ ...++||||+||+.++.+++.+..
T Consensus 143 -~~G~~--~~~~~l~~~~--~~~v~~~~~~~~d~~~~~~~ninTpeDl~~~~~~~~~~~~ 197 (208)
T 3ngw_A 143 -LQGIR--KILVPLERLN--VVYYPVEKLRKFDKELISFFNINTPDDLKRAEEICSKMST 197 (208)
T ss_dssp -HTTCC--CTHHHHHTSC--EEEEEGGGGTTTCTTCGGGCCCCSHHHHHHHHHHHHHC--
T ss_pred -HcCCC--CHHHHHHhCC--EEEecHHHhcccCcccceEEecCCHHHHHHHHHHhccccc
Confidence 22211 1233445443 4444422 246899999999999998876543
|
| >1fxo_A Glucose-1-phosphate thymidylyltransferase; rhamnose, nucleotidyltransferase, pyrophosphorylase, allostery; HET: TMP; 1.66A {Pseudomonas aeruginosa} SCOP: c.68.1.6 PDB: 1fzw_A 1g0r_A* 1g1l_A* 1g23_A* 1g2v_A* 1g3l_A* 1h5r_A* 1h5s_C* 1h5t_A* 1h5s_D* 1h5s_A* 1h5r_B* 1h5s_B* 1h5t_B* 1iim_A* 1iin_A* 3pkp_A* 3pkq_A* 1mp5_A* 1mp3_A* ... | Back alignment and structure |
|---|
Probab=99.79 E-value=1.2e-18 Score=140.67 Aligned_cols=197 Identities=17% Similarity=0.232 Sum_probs=131.3
Q ss_pred CCceeeeeCCeehHHHHHHHHhcCCCcCeEEEEeCCCchHHHHHHHHh---cCCcEEEecC--CccHHHHHHHHHhhccc
Q 028081 5 MPKQYLPLLGQPIALYSFYTFSRMVEVKEIVVVCDPSYSDIFEETKEK---INVDLKFSLP--GKERQDSVYSGLQEVDF 79 (214)
Q Consensus 5 ~~K~l~~l~gkpli~~~i~~~~~~~~~~~iiVv~~~~~~~~~~~~~~~---~~~~~~~~~~--~~~~~~sv~~al~~~~~ 79 (214)
.||+|++++|||||.|+++++..++ +++|+|++.+...+.+++.+.+ ++.++.++.. ..+...++..|+..+.
T Consensus 23 ~pK~llpi~gkpli~~~l~~l~~~g-i~~I~vv~~~~~~~~i~~~l~~g~~~g~~i~~~~~~~~~G~~~al~~a~~~i~- 100 (293)
T 1fxo_A 23 ISKQLLPVYDKPMIYYPLSTLMLAG-IREILIISTPQDTPRFQQLLGDGSNWGLDLQYAVQPSPDGLAQAFLIGESFIG- 100 (293)
T ss_dssp SCGGGSEETTEETTHHHHHHHHHTT-CCEEEEEECTTTHHHHHHHHTTSGGGTCEEEEEECSSCCCGGGHHHHTHHHHT-
T ss_pred CCceeCeECCEeHHHHHHHHHHHCC-CCEEEEEeccccHHHHHHHHhcccccCceEEEeeCCCCCCHHHHHHHHHHHhC-
Confidence 5999999999999999999999886 8999988754433556666654 5655544432 3345678888888775
Q ss_pred CCCeEEEEcCCCCCCCHHHHHHHHHHHHh--cCCeEEeeeccccE----EEecCCCceeeec-----CccchhhhcCCcc
Q 028081 80 NSELVCIHDSARPLVLSKDVQKVLMDALR--VGAAVLGVPAKATI----KEANSESFVVRTL-----DRKTLWEMQTPQV 148 (214)
Q Consensus 80 ~~~~vl~~~~d~P~v~~~~i~~~i~~~~~--~~~~i~~~~~~~~~----~~~~~~g~v~~~~-----~r~~~~~~~~p~~ 148 (214)
.+.++++.||+||.+ ..+.++++.+.. .++++.+.++.++. ...+++|.+..+. ++++ +...+++.
T Consensus 101 -~~~~~lv~gD~~~~~-~~l~~~l~~~~~~~~~~~v~~~~v~dp~~~g~v~~d~~g~v~~~~ekp~~~~s~-~~~~Giy~ 177 (293)
T 1fxo_A 101 -NDLSALVLGDNLYYG-HDFHELLGSASQRQTGASVFAYHVLDPERYGVVEFDQGGKAISLEEKPLEPKSN-YAVTGLYF 177 (293)
T ss_dssp -TSEEEEEETTEEEEC-TTHHHHHHHHHTCCSSEEEEEEECSCGGGSEEEEECTTSCEEEEEESCSSCSSS-EEEEEEEE
T ss_pred -CCCEEEEECChhccC-ccHHHHHHHHHhcCCCcEEEEEECCCcccCcEEEECCCCcEEEEEECCCCCCCC-eEEEEEEE
Confidence 244555559999998 578999987743 34566677777653 1234456654432 2232 44556889
Q ss_pred cChHHHHHHHHHHH---hcCCCCCcHHHHHHhCCCCeEE-EecCC-CCcccCCHHHHHHHHHHhh
Q 028081 149 IKPDLLKKGFELVN---REGLEVTDDVSIVEHLKHPVYI-TEGSY-TNIKVTTPDDLLIAERILN 208 (214)
Q Consensus 149 f~~~~l~~~~~~~~---~~~~~~~d~~~~~~~~g~~i~~-v~~~~-~~~~Idtp~Dl~~a~~~~~ 208 (214)
|+.+.+..+ .... +..++++|....+.+.| ++.+ +.+.. .|+||+||+||..|+.+++
T Consensus 178 ~~~~~l~~~-~~~~~~~~ge~~~td~~~~~l~~g-~~~v~~~~~g~~w~Digt~edl~~a~~~~~ 240 (293)
T 1fxo_A 178 YDQQVVDIA-RDLKPSPRGELEITDVNRAYLERG-QLSVEIMGRGYAWLDTGTHDSLLEAGQFIA 240 (293)
T ss_dssp ECTTHHHHH-HHCCCCTTSSCCHHHHHHHHHHTT-CEEEEECCTTSEEEECCSHHHHHHHHHHHH
T ss_pred EcHHHHHHH-HhcCcccCCceeHHHHHHHHHhcC-CeEEEEeCCCCEEEcCCCHHHHHHHHHHHH
Confidence 998776543 2221 12255666655555555 3443 34444 5999999999999998875
|
| >3st8_A Bifunctional protein GLMU; acetyltransferase, pyrophosphorylase, rossmann fold, LEFT-handed-beta-helix, cell shape; HET: COA GP1 UD1; 1.98A {Mycobacterium tuberculosis} PDB: 3spt_A* 3foq_A 3dk5_A 3d8v_A 3d98_A* 3dj4_A 2qkx_A* | Back alignment and structure |
|---|
Probab=99.75 E-value=1.2e-16 Score=137.93 Aligned_cols=208 Identities=14% Similarity=0.172 Sum_probs=151.0
Q ss_pred CCCCCCceeeeeCCeehHHHHHHHHhcCCCcCeEEEEeCCCchHHHHHHHH----hcCCcEEEecC--CccHHHHHHHHH
Q 028081 1 MGANMPKQYLPLLGQPIALYSFYTFSRMVEVKEIVVVCDPSYSDIFEETKE----KINVDLKFSLP--GKERQDSVYSGL 74 (214)
Q Consensus 1 m~~~~~K~l~~l~gkpli~~~i~~~~~~~~~~~iiVv~~~~~~~~~~~~~~----~~~~~~~~~~~--~~~~~~sv~~al 74 (214)
|++..||+|+|++|||||+|+++++.+++ +++|+|++++.. +.+++.+. .++.++.++.+ ..+..++++.|+
T Consensus 26 m~~~~pK~l~pv~gkp~i~~~l~~~~~~g-~~~i~vv~~~~~-~~i~~~~~~~~~~~~~~i~~~~q~~~lGTa~Av~~a~ 103 (501)
T 3st8_A 26 MRSDTPKVLHTLAGRSMLSHVLHAIAKLA-PQRLIVVLGHDH-QRIAPLVGELADTLGRTIDVALQDRPLGTGHAVLCGL 103 (501)
T ss_dssp GCCSSCGGGCEETTEEHHHHHHHHHHHHC-CSEEEEEECTTH-HHHHHHHHHHHHHHTSCCEEEECSSCCCHHHHHHHHH
T ss_pred CCCCCCHHHeEECChhHHHHHHHHHHhCC-CCEEEEEeCCCH-HHHHHHHHHHHHhcCCcEEEEEcCCCCCcHHHHHHHH
Confidence 66778999999999999999999999986 899999999875 44555443 45666666543 223578899999
Q ss_pred hhcccC-CCeEEEEcCCCCCCCHHHHHHHHHHHHhcCC--eEEeeeccccE----EEecCCCceeeecCccc-------h
Q 028081 75 QEVDFN-SELVCIHDSARPLVLSKDVQKVLMDALRVGA--AVLGVPAKATI----KEANSESFVVRTLDRKT-------L 140 (214)
Q Consensus 75 ~~~~~~-~~~vl~~~~d~P~v~~~~i~~~i~~~~~~~~--~i~~~~~~~~~----~~~~~~g~v~~~~~r~~-------~ 140 (214)
..+.++ .+.++++.+|.||++.+.+..+++.++..++ .+.+.++.++. ...+++|.+..+++... .
T Consensus 104 ~~l~~~~~~~~lvl~gd~~l~~~~~~~~l~~~h~~~~~~~ti~~~~~~dp~~yG~i~~~~~g~v~~ivEk~~~~~~~~~i 183 (501)
T 3st8_A 104 SALPDDYAGNVVVTSGDTPLLDADTLADLIATHRAVSAAVTVLTTTLDDPFGYGRILRTQDHEVMAIVEQTDATPSQREI 183 (501)
T ss_dssp TTSCTTCCSEEEEEETTCTTCCHHHHHHHHHHHHHTTCSEEEEEEECSCCTTSCEEEECTTCCEEEEECGGGCCHHHHHC
T ss_pred HHhccccccceeeecCcceeecHHHHHHHHHHHhhccccceEeeeccCCchhccccccccceeEEeeccccCCChhhccc
Confidence 988643 4679999999999999999999998876543 55666776652 22345677766654311 1
Q ss_pred hhhcC-CcccChHHHHHHHHHHHh----cCCCCCcHHHHHHhCCCCeEEEecCC--CCcccCCHHHHHHHHHHhhcc
Q 028081 141 WEMQT-PQVIKPDLLKKGFELVNR----EGLEVTDDVSIVEHLKHPVYITEGSY--TNIKVTTPDDLLIAERILNLS 210 (214)
Q Consensus 141 ~~~~~-p~~f~~~~l~~~~~~~~~----~~~~~~d~~~~~~~~g~~i~~v~~~~--~~~~Idtp~Dl~~a~~~~~~~ 210 (214)
..+++ -++|....|..++..... .++|++|...++...|..+..+..+. ...++++..++..++..++.+
T Consensus 184 ~~in~Giy~f~~~~l~~~l~~l~~~n~~~e~yltd~i~~~~~~g~~v~~~~~~~~~~~~g~n~~~~l~~~~~~~~~r 260 (501)
T 3st8_A 184 REVNAGVYAFDIAALRSALSRLSSNNAQQELYLTDVIAILRSDGQTVHASHVDDSALVAGVNNRVQLAELASELNRR 260 (501)
T ss_dssp CEEEEEEEEEEHHHHHHHHTTCCCCSTTCSCCTTHHHHHHHHTTCCEEEEECSSGGGGCCCSSHHHHHHHHHHHHHH
T ss_pred eeeeceeeeecchhHHHhhhhhcccccccccchhhHHHHHHhcCceEEEEeccchhhhcccccHHHHHHHHHHhhhh
Confidence 12222 478888888777654332 23789998888888998888765443 456789999999888776644
|
| >3juk_A UDP-glucose pyrophosphorylase (GALU); transfer; HET: UPG; 2.30A {Helicobacter pylori} PDB: 3juj_A* | Back alignment and structure |
|---|
Probab=99.75 E-value=8.9e-18 Score=134.59 Aligned_cols=199 Identities=11% Similarity=0.127 Sum_probs=131.2
Q ss_pred CCCceeeeeCCeehHHHHHHHHhcCCCcCeEEEEeCCCchHHHHHHHHh------------------------cCCcEEE
Q 028081 4 NMPKQYLPLLGQPIALYSFYTFSRMVEVKEIVVVCDPSYSDIFEETKEK------------------------INVDLKF 59 (214)
Q Consensus 4 ~~~K~l~~l~gkpli~~~i~~~~~~~~~~~iiVv~~~~~~~~~~~~~~~------------------------~~~~~~~ 59 (214)
++||+|++++|||||+|+++++.+++ +++|+|++++.. +.+.+.+.. ++..+.+
T Consensus 22 ~~pK~ll~i~gkpli~~~l~~l~~~g-i~~i~vv~~~~~-~~i~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~i~~ 99 (281)
T 3juk_A 22 TIPKEMLPIVDKPLIQYAVEEAMEAG-CEVMAIVTGRNK-RSLEDYFDTSYEIEHQIQGTNKENALKSIRNIIEKCCFSY 99 (281)
T ss_dssp TSCGGGCBSSSSBHHHHHHHHHHHHT-CCEEEEEECTTH-HHHHHHTSCCC--------CCHHHHHHHHHHHHHHCEEEE
T ss_pred CCCcccceECCEEHHHHHHHHHHhCC-CCEEEEEecCCH-HHHHHHHhcchhhhhhhhcccchhhhhhhhccccCccEEE
Confidence 67999999999999999999999986 899999998765 445554432 2344444
Q ss_pred ecC--CccHHHHHHHHHhhcccCCCeEEEEcCCCCCCCHH----HHHHHHHHHHhcCC-eEEeeec--ccc----EEEec
Q 028081 60 SLP--GKERQDSVYSGLQEVDFNSELVCIHDSARPLVLSK----DVQKVLMDALRVGA-AVLGVPA--KAT----IKEAN 126 (214)
Q Consensus 60 ~~~--~~~~~~sv~~al~~~~~~~~~vl~~~~d~P~v~~~----~i~~~i~~~~~~~~-~i~~~~~--~~~----~~~~~ 126 (214)
+.. ..+..++++.|+..+. .+.++++.||. +++.+ .++++++.+...++ ++.+.++ .++ +...+
T Consensus 100 ~~~~~~~Gt~~al~~a~~~l~--~~~~lv~~~D~-~~~~~~~~~~l~~l~~~~~~~~~~~v~~~~~~~~~~~~~g~v~~~ 176 (281)
T 3juk_A 100 VRQKQMKGLGHAILTGEALIG--NEPFAVILADD-LCISHDHPSVLKQMTSLYQKYQCSIVAIEEVALEEVSKYGVIRGE 176 (281)
T ss_dssp EECSSCCCHHHHHHHTHHHHC--SSCEEEECTTE-EEECTTSCCHHHHHHHHHHHHCSCEEEEEECCTTTGGGSEEEEEE
T ss_pred EecCCCCCcHHHHHHHHHHcC--CCCEEEEeCCe-eccCccchHHHHHHHHHHHHcCCCEEEEEEechhhcccCCEEEec
Confidence 432 2345788999988885 36789999999 88888 89999998866543 3444443 222 11223
Q ss_pred C--CC--ceeeecCccc-----hhhhc-CCcccChHHHHHHHHHHH---hcCCCCCcHHHHHHhCCCCeEEEecCCCCcc
Q 028081 127 S--ES--FVVRTLDRKT-----LWEMQ-TPQVIKPDLLKKGFELVN---REGLEVTDDVSIVEHLKHPVYITEGSYTNIK 193 (214)
Q Consensus 127 ~--~g--~v~~~~~r~~-----~~~~~-~p~~f~~~~l~~~~~~~~---~~~~~~~d~~~~~~~~g~~i~~v~~~~~~~~ 193 (214)
+ +| .+..+.+... ..... .-++|+.+.| ..+.... ...+++++....+...| ++..+..+..++|
T Consensus 177 ~~~~g~~~v~~~~Ekp~~~~~~~~~~~~GiYi~~~~~l-~~l~~~~~~~~~e~~l~d~i~~l~~~~-~v~~~~~~g~~~d 254 (281)
T 3juk_A 177 WLEEGVYEIKDMVEKPNQEDAPSNLAVIGRYILTPDIF-EILSETKPGKNNEIQITDALRTQAKRK-RIIAYQFKGKRYD 254 (281)
T ss_dssp EEETTEEEEEEEEESCCTTTCSCSEEEEEEEEECTTHH-HHHHTCCCCGGGSCCHHHHHHHHHHHS-CCEEEECCSEEEE
T ss_pred cCCCCceEEeEEEECcCCCCCCcceeEEEEEEECHHHH-HHHHhcCCCCCCceeHHHHHHHHHhcC-CEEEEEeCCeEEc
Confidence 2 45 5544432110 00111 2367777655 3444321 12356776665555555 7877776678999
Q ss_pred cCCHHHHHHHHHHhhc
Q 028081 194 VTTPDDLLIAERILNL 209 (214)
Q Consensus 194 Idtp~Dl~~a~~~~~~ 209 (214)
|+||+||..|+..+..
T Consensus 255 Igt~~d~~~a~~~l~~ 270 (281)
T 3juk_A 255 CGSVEGYIEASNAYYK 270 (281)
T ss_dssp TTSHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHh
Confidence 9999999999987653
|
| >1mc3_A Glucose-1-phosphate thymidylyltransferase; glucose-1-phosphate thymidylytransferase, RFFH; HET: TTP; 2.60A {Escherichia coli} SCOP: c.68.1.6 | Back alignment and structure |
|---|
Probab=99.74 E-value=5.1e-18 Score=137.03 Aligned_cols=199 Identities=15% Similarity=0.225 Sum_probs=128.7
Q ss_pred CCCceeeeeCCeehHHHHHHHHhcCCCcCeEEEEeCCCchHHHHHHHHh---cCCcEEEecC--CccHHHHHHHHHhhcc
Q 028081 4 NMPKQYLPLLGQPIALYSFYTFSRMVEVKEIVVVCDPSYSDIFEETKEK---INVDLKFSLP--GKERQDSVYSGLQEVD 78 (214)
Q Consensus 4 ~~~K~l~~l~gkpli~~~i~~~~~~~~~~~iiVv~~~~~~~~~~~~~~~---~~~~~~~~~~--~~~~~~sv~~al~~~~ 78 (214)
+.||+|++++|||||.|+++++..++ +++|+|++++...+.+++.+.. ++.++.++.. ..+..+++..|+..+.
T Consensus 23 ~~pK~llpi~gkpli~~~l~~l~~~g-i~~I~vv~~~~~~~~i~~~l~~g~~~g~~i~~~~~~~~~G~~~al~~a~~~i~ 101 (296)
T 1mc3_A 23 GVSKQLLPIYDKPMIYYPLSVLMLAG-IREILIITTPEDKGYFQRLLGDGSEFGIQLEYAEQPSPDGLAQAFIIGETFLN 101 (296)
T ss_dssp TSCGGGSEETTEETTHHHHHHHHHTT-CCEEEEEECTTTHHHHHHHHTTSGGGTCEEEEEECSSCCCSTHHHHHTHHHHT
T ss_pred CCCceeeEECCeeHHHHHHHHHHhCC-CCcEEEEechhHHHHHHHHHhcccccCceEEEeccCCCCCHHHHHHHHHHHhC
Confidence 46999999999999999999999875 8999998864433556666653 5555544422 2334678888888775
Q ss_pred cCCCeEEEEcCCCCCCCHHHHHHHHHHHHh--cCCeEEeeeccccEE----EecCCCceeeec-----CccchhhhcCCc
Q 028081 79 FNSELVCIHDSARPLVLSKDVQKVLMDALR--VGAAVLGVPAKATIK----EANSESFVVRTL-----DRKTLWEMQTPQ 147 (214)
Q Consensus 79 ~~~~~vl~~~~d~P~v~~~~i~~~i~~~~~--~~~~i~~~~~~~~~~----~~~~~g~v~~~~-----~r~~~~~~~~p~ 147 (214)
+.++++++ ||+||.+ ..+..+++.+.. .++++.+.++.++.. ..+++|.+..+. ++++ +...+++
T Consensus 102 -~~~~~lv~-gD~~~~~-~~l~~~l~~~~~~~~~~~v~~~~v~dp~~yg~v~~d~~g~v~~~~ekp~~~~s~-~~~~Giy 177 (296)
T 1mc3_A 102 -GEPSCLVL-GDNIFFG-QGFSPKLRHVAARTEGATVFGYQVMDPERFGVVEFDDNFRAISLEEKPKQPKSN-WAVTGLY 177 (296)
T ss_dssp -TSCEEEEE-TTEEEEC-SSCHHHHHHHTTCCSSEEEEEEECSCCSSSBBCEEETTEEEEECCBSCSSCSCS-EEEEEEE
T ss_pred -CCCEEEEE-CCccccc-cCHHHHHHHHHHcCCCCEEEEEECCCcccCCEEEECCCCcEEEEEECCCCCCCC-EEEEEEE
Confidence 23455555 9999988 578888887743 345566677776531 124445554332 1222 3344568
Q ss_pred ccChHHHHHHHHHHH---hcCCCCCcHHHHHHhCCCCeEEE-ecCC-CCcccCCHHHHHHHHHHhhc
Q 028081 148 VIKPDLLKKGFELVN---REGLEVTDDVSIVEHLKHPVYIT-EGSY-TNIKVTTPDDLLIAERILNL 209 (214)
Q Consensus 148 ~f~~~~l~~~~~~~~---~~~~~~~d~~~~~~~~g~~i~~v-~~~~-~~~~Idtp~Dl~~a~~~~~~ 209 (214)
.|+.+.+..+ .... +..++++|....+.+.| ++.+. .+.. .|+||+||+||..|+.+++.
T Consensus 178 ~~~~~~l~~~-~~~~~~~~ge~~~td~~~~~l~~g-~~~v~~~~~g~~w~Digt~edl~~a~~~~~~ 242 (296)
T 1mc3_A 178 FYDSKVVEYA-KQVKPSERGELEITSINQMYLEAG-NLTVELLGRGFAWLDTGTHDSLIEASTFVQT 242 (296)
T ss_dssp ECCTHHHHHH-HSCCCCSSSSCCHHHHHHHHHHTT-CEEEEECCTTCEEEECCSHHHHHHHHHHHHH
T ss_pred EEcHHHHHHH-HhcCccccCCccHHHHHHHHHhcC-CeEEEEeCCCCEEEeCCCHHHHHHHHHHHHH
Confidence 8888765432 2211 11255666555555555 34433 3334 58999999999999988753
|
| >1e5k_A Molybdopterin-guanine dinucleotide biosynthesis protein A; molybdopterin nucleotidyl-transferase,; HET: CIT; 1.35A {Escherichia coli} SCOP: c.68.1.8 PDB: 1h4e_A* 1hjl_A* 1hjj_A* 1h4c_A* 1h4d_A* 1fr9_A 1frw_A* | Back alignment and structure |
|---|
Probab=99.73 E-value=5e-17 Score=124.17 Aligned_cols=92 Identities=13% Similarity=0.140 Sum_probs=73.2
Q ss_pred CCceeeeeCCeehHHHHHHHHhcCCCcCeEEEEeCCCchHHHHHHHHhcCCcEEEe--cCCccHHHHHHHHHhhcccCCC
Q 028081 5 MPKQYLPLLGQPIALYSFYTFSRMVEVKEIVVVCDPSYSDIFEETKEKINVDLKFS--LPGKERQDSVYSGLQEVDFNSE 82 (214)
Q Consensus 5 ~~K~l~~l~gkpli~~~i~~~~~~~~~~~iiVv~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~sv~~al~~~~~~~~ 82 (214)
.||+|++++|+|||+|+++++.. .+++|+|+++++. +.+ ..++..+... .++.++.+|+..|++.+. .+
T Consensus 23 ~~K~ll~i~G~pli~~~l~~l~~--~~~~ivvv~~~~~-~~~----~~~~~~~v~~~~~~~~G~~~si~~~l~~~~--~~ 93 (201)
T 1e5k_A 23 VDKGLLELNGKPLWQHVADALMT--QLSHVVVNANRHQ-EIY----QASGLKVIEDSLADYPGPLAGMLSVMQQEA--GE 93 (201)
T ss_dssp SCGGGSEETTEEHHHHHHHHHHH--HCSCEEEECSSSH-HHH----HTTSCCEECCCTTCCCSHHHHHHHHHHHCC--SS
T ss_pred CCCceeeECceeHHHHHHHHHHh--hCCEEEEEcCCcH-HHH----hhcCCeEEecCCCCCCCHHHHHHHHHHhCC--CC
Confidence 69999999999999999999984 3799999998764 222 2344433211 222578999999999885 58
Q ss_pred eEEEEcCCCCCCCHHHHHHHHHH
Q 028081 83 LVCIHDSARPLVLSKDVQKVLMD 105 (214)
Q Consensus 83 ~vl~~~~d~P~v~~~~i~~~i~~ 105 (214)
++++++||+||+++++++++++.
T Consensus 94 ~vlv~~~D~P~i~~~~i~~l~~~ 116 (201)
T 1e5k_A 94 WFLFCPCDTPYIPPDLAARLNHQ 116 (201)
T ss_dssp EEEEEETTCTTCCTTHHHHHHHT
T ss_pred cEEEEeCCcCcCCHHHHHHHHhh
Confidence 89999999999999999999986
|
| >3pnn_A Conserved domain protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomics, MCSG; HET: MSE GOL; 1.90A {Porphyromonas gingivalis} | Back alignment and structure |
|---|
Probab=99.73 E-value=5.1e-17 Score=131.66 Aligned_cols=199 Identities=15% Similarity=0.115 Sum_probs=132.6
Q ss_pred Cceeeee--CCeehHHHHHHHHhcCCCcCeEEEEeCCCchHHHHHHHHh---cCCcEEEecC-----------------C
Q 028081 6 PKQYLPL--LGQPIALYSFYTFSRMVEVKEIVVVCDPSYSDIFEETKEK---INVDLKFSLP-----------------G 63 (214)
Q Consensus 6 ~K~l~~l--~gkpli~~~i~~~~~~~~~~~iiVv~~~~~~~~~~~~~~~---~~~~~~~~~~-----------------~ 63 (214)
||+|+++ +|+|||.|+++++.+++ +++|+|++++...+.+.+.+.. .+.++.++.+ .
T Consensus 22 ~K~l~~ig~~g~pli~~~l~~~~~~~-~~~i~vv~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~ 100 (303)
T 3pnn_A 22 LKQLDGIGPGGDTIMDYSVYDAIRAG-FGRLVFVIRHSFEKEFREKILTKYEGRIPVELVFQELDRLPEGFSCPEGREKP 100 (303)
T ss_dssp BCCCCCCSTTSCCHHHHHHHHHHHHT-CCEEEEEECGGGHHHHHHHTHHHHTTTSCEEEEECCTTCCCTTCCCCTTCCSC
T ss_pred CceEeEcCCCCeeHHHHHHHHHHHCC-CCeEEEEcCchHHHHHHHHHHHHhccCCcEEEEeccccccccccccccccccc
Confidence 7999999 69999999999998875 8999999997743455554432 1334544432 2
Q ss_pred ccHHHHHHHHHhhcccCCCeEEEEcCCCCCCCHHHHHHHHHHHHh---cC--CeEEeeecccc----------EEEecCC
Q 028081 64 KERQDSVYSGLQEVDFNSELVCIHDSARPLVLSKDVQKVLMDALR---VG--AAVLGVPAKAT----------IKEANSE 128 (214)
Q Consensus 64 ~~~~~sv~~al~~~~~~~~~vl~~~~d~P~v~~~~i~~~i~~~~~---~~--~~i~~~~~~~~----------~~~~~~~ 128 (214)
.+..++++.|...+. +.++++.||. +++.+.++.+++.+.. .+ .++.+.++.++ +..++++
T Consensus 101 ~Gt~~al~~a~~~i~---~~~lV~~gD~-l~~~~~~~~l~~~~~~~~~~~~~~~v~~~~~~~~~~~~g~~~~G~v~~d~~ 176 (303)
T 3pnn_A 101 WGTNHAVLMGRDAIR---EPFAVINADD-FYGRNGFEVLARKLMTLEGKQGEYCMVGYRVGNTLSESGGVSRGVCQVDEK 176 (303)
T ss_dssp CCHHHHHHTTTTTCC---SCEEEEESSC-BCCHHHHHHHHHHHHTTTTCSSEEEEEEEEGGGSCBTTBCEEEEEEEECTT
T ss_pred CCcHHHHHHHHHhcC---CCEEEEECCe-ecCHHHHHHHHHHHHHhccccCceEEEEEECCCccCccCceeeeeEeeCCC
Confidence 345778888877773 4467788999 7789889999998764 22 34555566544 2223445
Q ss_pred CceeeecCccch----------------------hhhc-CCcccChHHHHHHHHH--------HH---hcCCCCCcHHHH
Q 028081 129 SFVVRTLDRKTL----------------------WEMQ-TPQVIKPDLLKKGFEL--------VN---REGLEVTDDVSI 174 (214)
Q Consensus 129 g~v~~~~~r~~~----------------------~~~~-~p~~f~~~~l~~~~~~--------~~---~~~~~~~d~~~~ 174 (214)
|.+..+.++... ..+. .-++|+...+.. +.. .. ...++++|....
T Consensus 177 g~v~~i~Ekp~~~~~~~~~~~~~~~g~~~~~~~~~~i~~GiY~f~~~~~~~-l~~~~~~~l~~~~~~~~~e~~l~d~i~~ 255 (303)
T 3pnn_A 177 HLLTGVVERTGIERTDGTISFRDETGKICTLAEDAPVSMNMWGFTPDYFDY-SEELFINFLNAHGQEPKSEFFIPFVVND 255 (303)
T ss_dssp SBEEEEEEEEEEEEETTEEEEECTTSCEEEECTTCEEEEEEEEECTHHHHH-HHHHHHHHHHHHTTCSSCCCCHHHHHHH
T ss_pred CcEEEEEECCCCccccccccccccccccccCCCCCEEEEEEEEECHHHHHH-HHHHHHHHHHhcCCCcCCcEEhHHHHHH
Confidence 776544322110 0111 136777765433 322 11 123667877776
Q ss_pred HHhCCC-CeEEEecCCCCcccCCHHHHHHHHHHhhcc
Q 028081 175 VEHLKH-PVYITEGSYTNIKVTTPDDLLIAERILNLS 210 (214)
Q Consensus 175 ~~~~g~-~i~~v~~~~~~~~Idtp~Dl~~a~~~~~~~ 210 (214)
+...|. +|..+..+..++||+||+||..|++.++..
T Consensus 256 li~~g~~~v~~~~~~g~w~dIgt~~dl~~a~~~l~~~ 292 (303)
T 3pnn_A 256 LIRSGRASVEVLDTTARWFGVTYSDDRPGVVAKLREL 292 (303)
T ss_dssp HHHHTSCEEEEEECSCCCBCCSSGGGHHHHHHHHHHH
T ss_pred HHHcCCCcEEEEEeCCceECCCCHHHHHHHHHHHHHH
Confidence 666775 888888778899999999999999988764
|
| >2pa4_A UTP-glucose-1-phosphate uridylyltransferase; phosphorylase, nucleotidyltransferase, metabolism; HET: GUD; 2.00A {Corynebacterium glutamicum atcc 13032} | Back alignment and structure |
|---|
Probab=99.73 E-value=3.5e-17 Score=133.75 Aligned_cols=201 Identities=12% Similarity=0.118 Sum_probs=127.7
Q ss_pred CCCceeeeeCCeehHHHHHHHHhcCCCcCeEEEEeCCCchHHHHHHHHh------------------------cCCcEEE
Q 028081 4 NMPKQYLPLLGQPIALYSFYTFSRMVEVKEIVVVCDPSYSDIFEETKEK------------------------INVDLKF 59 (214)
Q Consensus 4 ~~~K~l~~l~gkpli~~~i~~~~~~~~~~~iiVv~~~~~~~~~~~~~~~------------------------~~~~~~~ 59 (214)
+.||+|++++|+|||+|+++++..++ +++|+|++++.. +.+.+.+.. .+..+.+
T Consensus 32 ~~pK~ll~i~gkpli~~~l~~l~~~g-i~~iivv~~~~~-~~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~g~~i~~ 109 (323)
T 2pa4_A 32 TVPKELLPVVDTPGIELIAAEAAELG-ATRLAIITAPNK-AGVLAHFERSSELEETLMERGKTDQVEIIRRAADLIKAVP 109 (323)
T ss_dssp TSCGGGCEETTEEHHHHHHHHHHHTT-CCEEEEEECTTC-HHHHHTTSCCHHHHHHHHHTTCHHHHHHTTHHHHHCEEEE
T ss_pred CCCceeeeECCEEHHHHHHHHHHhCC-CCEEEEEecCcH-HHHHHHHhccchhhhhhhccchhhhhhhhhccccCcceEE
Confidence 46999999999999999999999875 899999999864 344443321 2334444
Q ss_pred ecC--CccHHHHHHHHHhhcccCCCeEEEEcCCCCCCC-HHHHHHHHHHHHhcCCe-EEeeecc--cc--EE--Eec---
Q 028081 60 SLP--GKERQDSVYSGLQEVDFNSELVCIHDSARPLVL-SKDVQKVLMDALRVGAA-VLGVPAK--AT--IK--EAN--- 126 (214)
Q Consensus 60 ~~~--~~~~~~sv~~al~~~~~~~~~vl~~~~d~P~v~-~~~i~~~i~~~~~~~~~-i~~~~~~--~~--~~--~~~--- 126 (214)
+.. ..+..+++..|+..+..+.+.++++.||+|+ + +..++.+++.+...+++ +.+.++. +. .. ..+
T Consensus 110 ~~~~~~~Gt~~al~~a~~~l~~~~d~~lv~~~D~~~-~~~~~l~~l~~~~~~~~~~~i~~~~~~~~~~~~yg~v~~d~~~ 188 (323)
T 2pa4_A 110 VTQDKPLGLGHAVGLAESVLDDDEDVVAVMLPDDLV-LPTGVMERMAQVRAEFGGSVLCAVEVSEADVSKYGIFEIEADT 188 (323)
T ss_dssp EECSSCCCHHHHHHTTGGGSCSSCCEEEEECTTEEE-ESSCHHHHHHHHHHTTCSEEEEEEECCGGGGGGSEEEEEEECC
T ss_pred EeCCccCCcHHHHHHHHHHhcCCCCeEEEEeCCccc-CchHHHHHHHHHHHhcCCcEEEEEEecccccCCccEEEeCCcc
Confidence 322 3345788888887775333558999999999 7 78999999988765543 3344442 11 11 112
Q ss_pred -CCC--ceeeecCcc-----chhhh-cCCcccChHHHHHHHHHHHh---cCCCCCcHHHHHHhCCCCeEEEecCCCCccc
Q 028081 127 -SES--FVVRTLDRK-----TLWEM-QTPQVIKPDLLKKGFELVNR---EGLEVTDDVSIVEHLKHPVYITEGSYTNIKV 194 (214)
Q Consensus 127 -~~g--~v~~~~~r~-----~~~~~-~~p~~f~~~~l~~~~~~~~~---~~~~~~d~~~~~~~~g~~i~~v~~~~~~~~I 194 (214)
++| .+..+.+.. .-+.. -.-+.|+.+.+ ..+..... ..+++++....+...|.++..+..+..++||
T Consensus 189 ~~~~~~~V~~~~Ekp~~~~~~~~~~~~GiY~~~~~~~-~~l~~~~~~~~ge~~l~d~i~~l~~~g~~v~~~~~~g~w~DI 267 (323)
T 2pa4_A 189 KDSDVKKVKGMVEKPAIEDAPSRLAATGRYLLDRKIF-DALRRITPGAGGELQLTDAIDLLIDEGHPVHIVIHQGKRHDL 267 (323)
T ss_dssp SSTTEEEEEEEEESCCTTTCSCSEEEEEEEEEETHHH-HHHHHCCCCGGGCCCHHHHHHHHHHTTCCEEEEECCSEEEEC
T ss_pred cCCCceeEEEEEECCCCccccccEEEEEEEEECHHHH-HHHHhhCCCCCCeEeHHHHHHHHHHcCCCEEEEEeCCeEEeC
Confidence 233 444332211 00011 12256777644 33433211 1355666555555667888887776689999
Q ss_pred CCHHHHHHHHHHhh
Q 028081 195 TTPDDLLIAERILN 208 (214)
Q Consensus 195 dtp~Dl~~a~~~~~ 208 (214)
|||+||..++..+.
T Consensus 268 gt~~dl~~a~~~~~ 281 (323)
T 2pa4_A 268 GNPGGYIPACVDFG 281 (323)
T ss_dssp SSHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHh
Confidence 99999999985443
|
| >2dpw_A Hypothetical protein TTHA0179; transferase, structural genomics, NPPSFA, national project O structural and functional analyses; 2.90A {Thermus thermophilus} SCOP: c.68.1.19 | Back alignment and structure |
|---|
Probab=99.72 E-value=9.5e-17 Score=125.22 Aligned_cols=98 Identities=16% Similarity=0.158 Sum_probs=74.7
Q ss_pred CCceeeeeCCeehHHHHHHHHhcCCCcCeEEEEeCCCchHHHHHHHHhcCCcEEEecCCccHHHHHHHHHhhcccCCCeE
Q 028081 5 MPKQYLPLLGQPIALYSFYTFSRMVEVKEIVVVCDPSYSDIFEETKEKINVDLKFSLPGKERQDSVYSGLQEVDFNSELV 84 (214)
Q Consensus 5 ~~K~l~~l~gkpli~~~i~~~~~~~~~~~iiVv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sv~~al~~~~~~~~~v 84 (214)
.||+|++++|+|||+|+++++..++ + +|+|++..+. +.+.+ + +.+ .++.++.+|+..|++.+. +.+
T Consensus 22 ~~K~l~~i~g~pll~~~l~~l~~~~-~-~ivvv~~~~~---i~~~~---~--~~~-~~~~g~~~~i~~a~~~~~---~~~ 87 (232)
T 2dpw_A 22 GSKALVPYRGRPMVEWVLEALYAAG-L-SPVYVGENPG---LVPAP---A--LTL-PDRGGLLENLEQALEHVE---GRV 87 (232)
T ss_dssp SBGGGSEETTEETHHHHHHHHHHTT-C-EEEEESCCSS---CSSCC---S--EEE-CCCSSHHHHHHHHHHTCC---SEE
T ss_pred CCceeeEECCEEHHHHHHHHHHhcC-C-EEEEEeChHH---Hhhhc---C--eEe-cCCCCHHHHHHHHHHHcC---CCE
Confidence 6999999999999999999999886 5 8888876532 22211 2 344 556678999999998874 789
Q ss_pred EEEcCCCCCCCHHHHHHHHHHHHh-cCCeEEeee
Q 028081 85 CIHDSARPLVLSKDVQKVLMDALR-VGAAVLGVP 117 (214)
Q Consensus 85 l~~~~d~P~v~~~~i~~~i~~~~~-~~~~i~~~~ 117 (214)
++++||+||+++++++++++ +.. .+.++++.+
T Consensus 88 lv~~~D~P~~~~~~i~~l~~-~~~~~~~~~~~~~ 120 (232)
T 2dpw_A 88 LVATGDIPHLTEEAVRFVLD-KAPEAALVYPIVP 120 (232)
T ss_dssp EEEETTCTTCCHHHHHHHHH-HCCSCSEEEEEEE
T ss_pred EEEeCCcccCCHHHHHHHHh-cCCCCCEEEEEee
Confidence 99999999999999999998 522 223444444
|
| >4evw_A Nucleoside-diphosphate-sugar pyrophosphorylase; structural genomics, PSI-biology; HET: MSE; 1.90A {Vibrio cholerae} | Back alignment and structure |
|---|
Probab=99.69 E-value=5.3e-16 Score=122.69 Aligned_cols=201 Identities=10% Similarity=0.063 Sum_probs=128.1
Q ss_pred CCCCceeeeeCCeehHHHHHHHHhcCCCcCeEEEEeCCCch--HHHHHHHHhcCCc---EEEecC-CccHHHHHHHHHhh
Q 028081 3 ANMPKQYLPLLGQPIALYSFYTFSRMVEVKEIVVVCDPSYS--DIFEETKEKINVD---LKFSLP-GKERQDSVYSGLQE 76 (214)
Q Consensus 3 ~~~~K~l~~l~gkpli~~~i~~~~~~~~~~~iiVv~~~~~~--~~~~~~~~~~~~~---~~~~~~-~~~~~~sv~~al~~ 76 (214)
..+||+|++++|||||+|+++++.+...+++|+|++++... +.+.+....++.+ ...... ..+..++++.|+..
T Consensus 18 ~~~PK~llpv~gkpli~~~l~~l~~~~gi~~iivv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gt~~av~~a~~~ 97 (255)
T 4evw_A 18 YTQPKYMLEAHGQTLFEHSVNSFAAYFASTPFLFIVRNVYDTAVFVREKATQLGIKQFYIAELHTETRGQAETVTLGLEE 97 (255)
T ss_dssp CCSCGGGCEETTEEHHHHHHGGGGGGTTTSCEEEEEESSTTHHHHHHHHHHHHTCSSEEEEEESSCCSSHHHHHHHHHHH
T ss_pred CCCCccccEECCeEHHHHHHHHHhccCCCceEEEEECchhhhHHHHHHHHHHcCCCCceEEEeCCCCCCHHHHHHHHHHH
Confidence 36799999999999999999999983248999999987642 2344444445421 222222 23457899999988
Q ss_pred cc----cCCCeEEEEcCCCCCCCHHHHHHHHHHHHhcCCeEEeeecccc---EEEecCCC--ceeeecCccch-hhhc-C
Q 028081 77 VD----FNSELVCIHDSARPLVLSKDVQKVLMDALRVGAAVLGVPAKAT---IKEANSES--FVVRTLDRKTL-WEMQ-T 145 (214)
Q Consensus 77 ~~----~~~~~vl~~~~d~P~v~~~~i~~~i~~~~~~~~~i~~~~~~~~---~~~~~~~g--~v~~~~~r~~~-~~~~-~ 145 (214)
+. ...+.++++.||. +++...+..+ ....++.+.+.++.++ ....+++| .|..+.+.... ..+. .
T Consensus 98 l~~~~~~~~~~~lV~~gD~-l~~~~~~~~~---~~~~~~~i~~~~~~~p~yG~v~~d~~g~~~V~~i~EK~~~s~~~~~G 173 (255)
T 4evw_A 98 LAKQGVDYQGSITVFNIDT-FRPNFVFPDI---SQHSDGYLEVFQGGGDNWSFAKPEHAGSTKVIQTAEKNPISDLCSTG 173 (255)
T ss_dssp HHHTTCCCCSCEEECCTTE-ECTTCCCCGG---GGSSSEEEEEEECCSSCSCEEEESSTTCCBEEEEESSSCSSSEEEEE
T ss_pred HhhcccCCCCcEEEEeCCE-EEecchhHHH---hhcCCcEEEEEecCCCceeEEEECCCCCeEEEEEEeccCccCcEEEe
Confidence 82 1245688999999 6644333332 1223445666666554 12234456 67666543211 0111 2
Q ss_pred CcccChH-HHHHHHHHH----H----hcCCCCCcHHHHHHhCCCCeEEEecC-CCCcccCCHHHHHHHHHHh
Q 028081 146 PQVIKPD-LLKKGFELV----N----REGLEVTDDVSIVEHLKHPVYITEGS-YTNIKVTTPDDLLIAERIL 207 (214)
Q Consensus 146 p~~f~~~-~l~~~~~~~----~----~~~~~~~d~~~~~~~~g~~i~~v~~~-~~~~~Idtp~Dl~~a~~~~ 207 (214)
.+.|+.. .+.+++... . +.++|++|....+...|.++..+..+ ..++||+||+||..+++.-
T Consensus 174 iY~f~~~~~~~~~l~~~i~~~~~~~~~gE~~ltd~i~~li~~g~~v~~~~~~~~~w~digt~~~l~~~~~~~ 245 (255)
T 4evw_A 174 LYHFNRKEDYLEAYREYVARPSQEWERGELYIAPLYNELIQKGLNIHYHLIARHEVIFCGVPDEYTDFLRQP 245 (255)
T ss_dssp EEEESCHHHHHHHHHHHHTSCGGGCSCSCCCSTTHHHHHHHTTCCEEEEECCGGGCEECCSHHHHHHHHHC-
T ss_pred EEEECcHHHHHHHHHHHHhcccccccCCeEehHHHHHHHHHCCCEEEEEEeccccEEECCCHHHHHHHHhcC
Confidence 3677764 344444321 1 23478999888888888899877654 6899999999999998753
|
| >2ggo_A 401AA long hypothetical glucose-1-phosphate thymidylyltransferase; beta barrel; 1.80A {Sulfolobus tokodaii} PDB: 2ggq_A* | Back alignment and structure |
|---|
Probab=99.69 E-value=3.7e-17 Score=137.12 Aligned_cols=191 Identities=15% Similarity=0.248 Sum_probs=119.8
Q ss_pred CCCceeeeeCCeehHHHHHHHHhcCCCcCeEEEEeCCCchHHHHHHHHhcCCcEEEecCC---ccHHHHHHHHHhhcccC
Q 028081 4 NMPKQYLPLLGQPIALYSFYTFSRMVEVKEIVVVCDPSYSDIFEETKEKINVDLKFSLPG---KERQDSVYSGLQEVDFN 80 (214)
Q Consensus 4 ~~~K~l~~l~gkpli~~~i~~~~~~~~~~~iiVv~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~sv~~al~~~~~~ 80 (214)
+.||+|++++|||||+|+++++.+++ +++|+|+++++ + ++.+......+.++... .+...++ ....+
T Consensus 20 ~~~K~ll~i~g~pli~~~l~~l~~~~-~~~i~vv~~~~-i---~~~~~~~~~~i~~~~~~~~~~g~~~~l----~~~~~- 89 (401)
T 2ggo_A 20 TRPKAFVPILSKPLIEYQIEYLRKCG-IRDITVIVSSK-N---KEYFEKKLKEISIVTQKDDIKGTGAAI----LSAKF- 89 (401)
T ss_dssp TSCGGGCEETTEEHHHHHHHHHHHTT-CCEEEEEECGG-G---HHHHHHHCTTCEEEECCTTCCBSTTTG----GGCCC-
T ss_pred CCCcceeeECCEeHHHHHHHHHHHCC-CCEEEEEeCHH-H---HHHhhccCCcEEEEeCCCCCCChHHHH----HHhcc-
Confidence 57999999999999999999999886 89999999876 3 33333322123343322 2223333 33221
Q ss_pred CCeEEEEcCCCCCCCHHHHHHHHHHHHhcCCeEEeeeccccE----EEecCCCceeeecC-----ccchhhhcCCcccCh
Q 028081 81 SELVCIHDSARPLVLSKDVQKVLMDALRVGAAVLGVPAKATI----KEANSESFVVRTLD-----RKTLWEMQTPQVIKP 151 (214)
Q Consensus 81 ~~~vl~~~~d~P~v~~~~i~~~i~~~~~~~~~i~~~~~~~~~----~~~~~~g~v~~~~~-----r~~~~~~~~p~~f~~ 151 (214)
.+.++++.||+||.+++.++++++ ..+.++++.+..++. ...+++|.+..+.+ ++.++. -.-+.|+.
T Consensus 90 ~~~~lv~~~D~~~~~~~~~~~l~~---~~~~~i~~~~~~~~~~~~~v~~~~~g~v~~~~ek~~~~~~~~~~-~Giy~~~~ 165 (401)
T 2ggo_A 90 NDEALIIYGDLFFSNEKEICNIIT---LKENAIIGVKVSNPKDYGVLVLDNQNNLSKIIEKPEIPPSNLIN-AGIYKLNS 165 (401)
T ss_dssp SSEEEEEETTEEESCSHHHHHHTT---CSSEEEEEEECSCCSSSCEEEECTTSSEEEEECSCSSCSCSEEE-EEEEEEET
T ss_pred CCCEEEEeCccccccHHHHHHHHH---hcCCEEEEEEcCCCcceeEEEECCCCeEEEEEECCCCCCCcEEE-EEEEEEcH
Confidence 467889999999999999999886 234556666665532 11243455544322 111111 01135666
Q ss_pred HHHHHHHHHHH---hcCCCCCcHHHHHHhCCCCeEEEecCCCCcccCCHHHHHHHHHHhhcc
Q 028081 152 DLLKKGFELVN---REGLEVTDDVSIVEHLKHPVYITEGSYTNIKVTTPDDLLIAERILNLS 210 (214)
Q Consensus 152 ~~l~~~~~~~~---~~~~~~~d~~~~~~~~g~~i~~v~~~~~~~~Idtp~Dl~~a~~~~~~~ 210 (214)
+.+. .++... ...+++++....+ ..|.++..+..+..++|||||+||..++.++..+
T Consensus 166 ~~~~-~l~~~~~~~~~~~~~~~~~~~~-~~g~~v~~~~~~~~~~dI~t~edl~~a~~~l~~~ 225 (401)
T 2ggo_A 166 DIFT-YLDKISISERGELELTDAINLM-AKDHRVKVIEYEGYWMDIGKPWNIIDVNKWALDN 225 (401)
T ss_dssp HHHH-HHHHSCCCSSSCBCHHHHHHHH-HHHSCEEEEECCSCEEECCSHHHHHHHHHHHHHH
T ss_pred HHHH-HhhhcCcCCCCceEHHHHHHHH-HCCCcEEEEEecceEEcCCCHHHHHHHHHHHHHh
Confidence 5543 333321 1124455555555 5567888887777899999999999999887654
|
| >2ux8_A Glucose-1-phosphate uridylyltransferase; UGPG, GALU pyrophosphorylase, nucleotidyltransferase; HET: G1P; 2.65A {Sphingomonas elodea} | Back alignment and structure |
|---|
Probab=99.68 E-value=3.5e-16 Score=126.29 Aligned_cols=198 Identities=12% Similarity=0.135 Sum_probs=119.1
Q ss_pred CCCceeeeeCCeehHHHHHHHHhcCCCcCeEEEEeCCCchHHHHHHHHh-----------------------cCCcEEEe
Q 028081 4 NMPKQYLPLLGQPIALYSFYTFSRMVEVKEIVVVCDPSYSDIFEETKEK-----------------------INVDLKFS 60 (214)
Q Consensus 4 ~~~K~l~~l~gkpli~~~i~~~~~~~~~~~iiVv~~~~~~~~~~~~~~~-----------------------~~~~~~~~ 60 (214)
++||+|++++|||||+|+++++.+++ +++|+|++++.. +.+.+.+.. .+..+.++
T Consensus 34 ~~pK~ll~i~gkpli~~~l~~l~~~g-~~~i~vv~~~~~-~~i~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~g~~i~~~ 111 (297)
T 2ux8_A 34 AMPKEMLPVVDRPLIQYAVDEAVEAG-IEQMIFVTGRGK-SALEDHFDIAYELEATMAARGKSLDVLDGTRLKPGNIAYV 111 (297)
T ss_dssp SSCGGGCEETTEEHHHHHHHHHHHTT-CCEEEEEECTTC-HHHHHHTSCCHHHHHHHHTTTCCGGGGTTSCCSTTSEEEE
T ss_pred CCCceeeeECCeEHHHHHHHHHHhCC-CCEEEEEeCCCH-HHHHHHHhhhhhhhhhhhhccchhhhhhhcccCCCceEEE
Confidence 57999999999999999999999885 899999999764 445554332 23345444
Q ss_pred c--CCccHHHHHHHHHhhcccCCCeEEEEcCCCCCCC--HHHHHHHHHHHHhcCC-eEEeeec--ccc--EEEe--c--C
Q 028081 61 L--PGKERQDSVYSGLQEVDFNSELVCIHDSARPLVL--SKDVQKVLMDALRVGA-AVLGVPA--KAT--IKEA--N--S 127 (214)
Q Consensus 61 ~--~~~~~~~sv~~al~~~~~~~~~vl~~~~d~P~v~--~~~i~~~i~~~~~~~~-~i~~~~~--~~~--~~~~--~--~ 127 (214)
. ...+..++++.|+..+. .+.++++.||+|+ + +..++.+++.+.+.++ .+.+.+. .++ ...+ + +
T Consensus 112 ~~~~~~Gt~~al~~a~~~~~--~~~~lv~~~D~~~-~~~~~~l~~l~~~~~~~~~~~i~~~~~~~~~~~~yg~v~~~~~~ 188 (297)
T 2ux8_A 112 RQQEPMGLGHAVWCARDIVG--DEPFAVLLPDDFM-FGQPGCLKQMVDAYNKVGGNLICAEEVPDDQTHRYGIITPGTQD 188 (297)
T ss_dssp ECCSCCCHHHHHHTTHHHHC--SSCEEEECTTEEE-ESSSCHHHHHHHHHHHHCSEEEEEC-----------CCCCCCBC
T ss_pred eCCCCCChHHHHHHHHHHcC--CCcEEEEeCCeec-CCChHHHHHHHHHHHhcCCCEEEEEecCcccCCCCCeEEecccC
Confidence 3 23345788888888775 3678999999995 5 6899999998765554 3333333 222 1112 1 1
Q ss_pred CC--ceeeecCccc-----hhhh-cCCcccChHHHHHHHHHHHh---cCCCCCcHHHHHHhCCCCeEEEecCCCCcccCC
Q 028081 128 ES--FVVRTLDRKT-----LWEM-QTPQVIKPDLLKKGFELVNR---EGLEVTDDVSIVEHLKHPVYITEGSYTNIKVTT 196 (214)
Q Consensus 128 ~g--~v~~~~~r~~-----~~~~-~~p~~f~~~~l~~~~~~~~~---~~~~~~d~~~~~~~~g~~i~~v~~~~~~~~Idt 196 (214)
+| .+..+.+... -+.. -.-+.|+.+.+ ..+..... ..+++++....+...| ++..+..+..++||||
T Consensus 189 ~~~~~v~~~~ekp~~~~~~~~~~~~Giyi~~~~~l-~~l~~~~~~~~~~~~l~d~i~~l~~~~-~v~~~~~~~~w~dIgt 266 (297)
T 2ux8_A 189 GVLTEVKGLVEKPAPGTAPSNLSVIGRYILQPEVM-RILENQGKGAGGEIQLTDAMQRMIGDQ-PFHGVTFQGTRYDCGD 266 (297)
T ss_dssp SSEEEC--------------CCCEEEEEEECTHHH-HHHHHTC--------CCTTGGGGTTTS-CEEEEECSSEEEETTS
T ss_pred CCceeEEEEEECCCCCCCCccEEEEEEEEECHHHH-HHHHhhCCCCCCeeEHHHHHHHHHhcC-CEEEEEecceEEeCCC
Confidence 23 3332221100 0001 11256777644 44443221 1255666544443344 7887777668999999
Q ss_pred HHHHHHHHHHhh
Q 028081 197 PDDLLIAERILN 208 (214)
Q Consensus 197 p~Dl~~a~~~~~ 208 (214)
|+||..++..+.
T Consensus 267 ~~dl~~a~~~~~ 278 (297)
T 2ux8_A 267 KAGFIQANLAVA 278 (297)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 999999985543
|
| >1jyk_A LICC protein, CTP:phosphocholine cytidylytransferase; 3D structure, CTP:phosphocholine cytidylyltransferase; 1.50A {Streptococcus pneumoniae} SCOP: c.68.1.13 PDB: 1jyl_A* | Back alignment and structure |
|---|
Probab=99.68 E-value=1.9e-16 Score=125.18 Aligned_cols=195 Identities=15% Similarity=0.084 Sum_probs=117.1
Q ss_pred CCCCceeeeeCCeehHHHHHHHHhcCCCcCeEEEEeCCCchHHHHHHHHhcCCcEEEecC--CccHHHHHHHHHhhcccC
Q 028081 3 ANMPKQYLPLLGQPIALYSFYTFSRMVEVKEIVVVCDPSYSDIFEETKEKINVDLKFSLP--GKERQDSVYSGLQEVDFN 80 (214)
Q Consensus 3 ~~~~K~l~~l~gkpli~~~i~~~~~~~~~~~iiVv~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~sv~~al~~~~~~ 80 (214)
+++||+|++++|+|||+|+++++.+++ +++|+|++++.. +.+..+.+.++..+..... ..+..+++..|+..++
T Consensus 44 ~~~pK~l~~i~gkpli~~~l~~l~~~g-~~~i~vv~~~~~-~~i~~~~~~~~~~iv~~~~~~~~g~~~al~~a~~~~~-- 119 (254)
T 1jyk_A 44 ENTPKALVQVNQKPLIEYQIEFLKEKG-INDIIIIVGYLK-EQFDYLKEKYGVRLVFNDKYADYNNFYSLYLVKEELA-- 119 (254)
T ss_dssp SSSCGGGCEETTEEHHHHHHHHHHHTT-CCCEEEEECTTG-GGGTHHHHHHCCEEEECTTTTTSCTHHHHHTTGGGCT--
T ss_pred CCCCCEEeeECCEEHHHHHHHHHHHCC-CCeEEEEeCCcH-HHHHHHHHhCCcEEEECCCccCCCcHHHHHHHHHHCC--
Confidence 457999999999999999999999885 899999998754 2344444555544322221 2234677877776663
Q ss_pred CCeEEEEcCCCCCCCHHHHHHHHHHHHhcCCeEEeeecccc---EE-EecCCCceeeecCccchhhhc-CCcccChH---
Q 028081 81 SELVCIHDSARPLVLSKDVQKVLMDALRVGAAVLGVPAKAT---IK-EANSESFVVRTLDRKTLWEMQ-TPQVIKPD--- 152 (214)
Q Consensus 81 ~~~vl~~~~d~P~v~~~~i~~~i~~~~~~~~~i~~~~~~~~---~~-~~~~~g~v~~~~~r~~~~~~~-~p~~f~~~--- 152 (214)
+ +++++||.|+.. +.++.+++ .++.+++ ...++ .. ..+++|.+..+.++....... .-+.|+..
T Consensus 120 -~-~lv~~~D~~~~~-~~~~~~~~----~~~~~t~-~~~~~~~~~~v~~d~~g~v~~~~e~~~~~~~~~Giy~~~~~~~~ 191 (254)
T 1jyk_A 120 -N-SYVIDADNYLFK-NMFRNDLT----RSTYFSV-YREDCTNEWFLVYGDDYKVQDIIVDSKAGRILSGVSFWDAPTAE 191 (254)
T ss_dssp -T-EEEEETTEEESS-CCCCSCCC----SEEEEEC-EESSCSSCCEEEECTTCBEEEEECCCSSEEBCCSEEEECHHHHH
T ss_pred -C-EEEEeCCcccCH-HHHHHHHh----CCceEEE-EcccCCCCeEEEECCCCeEEEEEECCCCCcEEEEEEEEcHHHHH
Confidence 3 678999999998 65554432 2222222 22221 11 134456665543321111111 23567654
Q ss_pred HHHHHHHHHHhc----CCCCCcHHHHHHhCCCCeEEEecC-CCCcccCCHHHHHHHHHHhhcc
Q 028081 153 LLKKGFELVNRE----GLEVTDDVSIVEHLKHPVYITEGS-YTNIKVTTPDDLLIAERILNLS 210 (214)
Q Consensus 153 ~l~~~~~~~~~~----~~~~~d~~~~~~~~g~~i~~v~~~-~~~~~Idtp~Dl~~a~~~~~~~ 210 (214)
.|.++++..... .+|++|....+ ..+.++..+..+ ..+++||||+||..++.+++..
T Consensus 192 ~l~~~l~~~~~~~~~~e~~~~d~~~~l-~~~~~v~~~~~~~~~~~~Idt~edl~~a~~~l~~~ 253 (254)
T 1jyk_A 192 KIVSFIDKAYVSGEFVDLYWDNMVKDN-IKELDVYVEELEGNSIYEIDSVQDYRKLEEILKNE 253 (254)
T ss_dssp HHHHHHHHHHTTTCCTTCCTTHHHHTT-GGGCCEEEEECCTTSEEECCSHHHHHHHHHHHC--
T ss_pred HHHHHHHHHHhcCCccccCHHHHHHHH-HhhCCeEEEEecCCeEEEcCCHHHHHHHHHHhhhc
Confidence 333444433222 24556543222 345778776655 6799999999999999998753
|
| >2e8b_A Probable molybdopterin-guanine dinucleotide biosy protein A; putative protein, molybdenum cofactor, structural G NPPSFA; 1.61A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=99.67 E-value=2.1e-16 Score=120.64 Aligned_cols=89 Identities=16% Similarity=0.148 Sum_probs=71.3
Q ss_pred CCceeeeeCCeehHHHHHHHHhcCCCcCeEEEEeCCCchHHHHHHHHhcCCcEEEec-CCccHHHHHHHHHhhcccCCCe
Q 028081 5 MPKQYLPLLGQPIALYSFYTFSRMVEVKEIVVVCDPSYSDIFEETKEKINVDLKFSL-PGKERQDSVYSGLQEVDFNSEL 83 (214)
Q Consensus 5 ~~K~l~~l~gkpli~~~i~~~~~~~~~~~iiVv~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~sv~~al~~~~~~~~~ 83 (214)
.||+|++++|||||+|+++++..+ +++|+|+++++.. .. .. +..+.... .+.++.+++..|++.+. .+.
T Consensus 30 ~~K~ll~i~g~pll~~~l~~l~~~--~~~i~vv~~~~~~---~~-~~--~~~~v~~~~~~~g~~~~i~~al~~~~--~~~ 99 (201)
T 2e8b_A 30 EDKLLYEIKGKKVIERVYETAKSV--FKEVYIVAKDREK---FS-FL--NAPVVLDEFEESASIIGLYTALKHAK--EEN 99 (201)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHHTT--CSEEEEEESCSGG---GG-GG--TCCEEECCCSSCCHHHHHHHHHHHCS--SSE
T ss_pred CCcccceECceEHHHHHHHHHHHh--CCEEEEEeCcHHH---hh-cC--CceEEecCCCCCCcHHHHHHHHHHcC--CCC
Confidence 599999999999999999999876 7999999998753 11 11 43332212 34577999999998875 578
Q ss_pred EEEEcCCCCCCCHHHHHH-HH
Q 028081 84 VCIHDSARPLVLSKDVQK-VL 103 (214)
Q Consensus 84 vl~~~~d~P~v~~~~i~~-~i 103 (214)
++++.||+||++++.+++ ++
T Consensus 100 ~lv~~~D~P~i~~~~i~~~l~ 120 (201)
T 2e8b_A 100 VFVLSGDLPLMKKETVLYVLE 120 (201)
T ss_dssp EEEEETTCTTCCHHHHHHHHH
T ss_pred EEEEeCCcCcCCHHHHHHHHh
Confidence 999999999999999999 87
|
| >2e3d_A UTP--glucose-1-phosphate uridylyltransferase; UDP-glucose, carbohydrate, pyrophosphorylase; 1.95A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.65 E-value=1.6e-15 Score=122.61 Aligned_cols=197 Identities=15% Similarity=0.125 Sum_probs=123.1
Q ss_pred CCCceeeeeCCeehHHHHHHHHhcCCCcCeEEEEeCCCchHHHHHHHHh-------------------------cCCcEE
Q 028081 4 NMPKQYLPLLGQPIALYSFYTFSRMVEVKEIVVVCDPSYSDIFEETKEK-------------------------INVDLK 58 (214)
Q Consensus 4 ~~~K~l~~l~gkpli~~~i~~~~~~~~~~~iiVv~~~~~~~~~~~~~~~-------------------------~~~~~~ 58 (214)
.+||+|++++|+|||+|+++++..++ +++|+|++++.. +.+.+.+.. .+..+.
T Consensus 28 ~~pK~ll~i~gkpli~~~l~~l~~~g-i~~i~vv~~~~~-~~i~~~~~~~~~l~~~l~~~~~~~~l~~~~~~~~~~~~i~ 105 (302)
T 2e3d_A 28 AIPKEMLPLVDKPLIQYVVNECIAAG-ITEIVLVTHSSK-NSIENHFDTSFELEAMLEKRVKRQLLDEVQSICPPHVTIM 105 (302)
T ss_dssp SSCGGGCEETTEEHHHHHHHHHHHTT-CCEEEEEECGGG-HHHHHHHSCCHHHHHHHC----CHHHHHHHHTSCTTCEEE
T ss_pred CCCceeeEECCeEHHHHHHHHHHHCC-CCEEEEEeCCCH-HHHHHHHhcchhhhhhhhhccchhhhhhhhhccccCcceE
Confidence 46999999999999999999999885 899999999754 445554432 133444
Q ss_pred Eec--CCccHHHHHHHHHhhcccCCCeEEEEcCCCCCCC---HH---HHHHHHHHHHhcCC-eEEeeecccc--EEEec-
Q 028081 59 FSL--PGKERQDSVYSGLQEVDFNSELVCIHDSARPLVL---SK---DVQKVLMDALRVGA-AVLGVPAKAT--IKEAN- 126 (214)
Q Consensus 59 ~~~--~~~~~~~sv~~al~~~~~~~~~vl~~~~d~P~v~---~~---~i~~~i~~~~~~~~-~i~~~~~~~~--~~~~~- 126 (214)
++. ...+..++++.|+..+. .+.++++.||.|+-. +. +++++++.+.+.++ ++.+.+..+. ...+.
T Consensus 106 ~~~~~~~~Gt~~al~~a~~~~~--~~~~lv~~~D~~~~~~~~~~~~~~l~~l~~~~~~~~~~~i~~~~~~~~~~yg~v~~ 183 (302)
T 2e3d_A 106 QVRQGLAKGLGHAVLCAHPVVG--DEPVAVILPDVILDEYESDLSQDNLAEMIRRFDETGHSQIMVEPVADVTAYGVVDC 183 (302)
T ss_dssp EEECSSCCCHHHHHHHTHHHHC--SSCEEEECTTEEECTTSSCTTTSTHHHHHHHHHHHCCEEEEEEECSCGGGSEEEEC
T ss_pred EeeCCccCCHHHHHHHHHHHcC--CCcEEEEcCCccccCccccchHHHHHHHHHHHHhcCCcEEEEEEccCCCCccEEEe
Confidence 432 23455788998888775 357899999999831 56 89999998765544 3344444332 11111
Q ss_pred -----CCC---ceeeecCccc-----hhhh-cCCcccChHHHHHHHHHHHh---cCCCCCcHHHHHHhCCCCeEEEecCC
Q 028081 127 -----SES---FVVRTLDRKT-----LWEM-QTPQVIKPDLLKKGFELVNR---EGLEVTDDVSIVEHLKHPVYITEGSY 189 (214)
Q Consensus 127 -----~~g---~v~~~~~r~~-----~~~~-~~p~~f~~~~l~~~~~~~~~---~~~~~~d~~~~~~~~g~~i~~v~~~~ 189 (214)
++| .+..+.+... -+.. -.-+.|+.+.+ ..+..... ..+++++....+...| ++..+..+.
T Consensus 184 ~~~~~~~g~~~~v~~~~ekp~~~~~~~~~~~~Giyi~~~~~l-~~l~~~~~~~~~~~~l~d~i~~l~~~~-~v~~~~~~~ 261 (302)
T 2e3d_A 184 KGVELAPGESVPMVGVVEKPKADVAPSNLAIVGRYVLSADIW-PLLAKTPPGAGDEIQLTDAIDMLIEKE-TVEAYHMKG 261 (302)
T ss_dssp TTCCCCTTCEEEECEEEESCCTTTCSCSEEEEEEEEECTTHH-HHHTCCCC----CCCHHHHHHHHHHHS-CEEEEECCS
T ss_pred cccccCCCCceeEEEEEECCCCCccccceEEEEEEEECHHHH-HHHHhhCCCCCCceehHHHHHHHHHhC-CEEEEEeCC
Confidence 234 3433221100 0001 11256776644 33322111 1245566554444456 888877777
Q ss_pred CCcccCCHHHHHHHHHH
Q 028081 190 TNIKVTTPDDLLIAERI 206 (214)
Q Consensus 190 ~~~~Idtp~Dl~~a~~~ 206 (214)
.++||+||+||..++..
T Consensus 262 ~~~DIgt~~d~~~a~~~ 278 (302)
T 2e3d_A 262 KSHDCGNKLGYMQAFVE 278 (302)
T ss_dssp CEEECSSHHHHHHHHHH
T ss_pred eEEcCCCHHHHHHHHHH
Confidence 89999999999999833
|
| >1tzf_A Glucose-1-phosphate cytidylyltransferase; nucleotidyltransferase, mixed alpha/beta fold; HET: C5G; 2.10A {Salmonella enterica subsp} SCOP: c.68.1.13 PDB: 1wvc_A* | Back alignment and structure |
|---|
Probab=99.62 E-value=5.7e-15 Score=116.62 Aligned_cols=196 Identities=11% Similarity=0.074 Sum_probs=121.3
Q ss_pred CCCceeeeeCCeehHHHHHHHHhcCCCcCeEEEEeCCCchHHHHHHHHhcC---CcEEE---------------------
Q 028081 4 NMPKQYLPLLGQPIALYSFYTFSRMVEVKEIVVVCDPSYSDIFEETKEKIN---VDLKF--------------------- 59 (214)
Q Consensus 4 ~~~K~l~~l~gkpli~~~i~~~~~~~~~~~iiVv~~~~~~~~~~~~~~~~~---~~~~~--------------------- 59 (214)
.+||+|++++|||||+|+++++.+++ +++|+|++++.. +.+++.+..+. ..+.+
T Consensus 22 ~~pK~l~~i~gkpli~~~l~~l~~~g-~~~i~vv~~~~~-~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 99 (259)
T 1tzf_A 22 VKPKPMVEIGGKPILWHIMKMYSVHG-IKDFIICCGYKG-YVIKEYFANYFLHMSDVTFHMAENRMEVHHKRVEPWNVTL 99 (259)
T ss_dssp CCCGGGCEETTEEHHHHHHHHHHHTT-CCEEEEEECTTH-HHHHHHHHTHHHHHSCEEEEGGGTEEEETTCCCCCCEEEE
T ss_pred CCCccccEECCEEHHHHHHHHHHHCC-CCEEEEEcccCH-HHHHHHHhhcccccccccccccccceeeeeccccccceee
Confidence 46999999999999999999999886 899999998775 45666554321 11211
Q ss_pred ec--CCccHHHHHHHHHhhcccCCCeEEEEcCCCCCCCHHHHHHHHHHHHhcCCeEEeeecccc--E--EEecCCCceee
Q 028081 60 SL--PGKERQDSVYSGLQEVDFNSELVCIHDSARPLVLSKDVQKVLMDALRVGAAVLGVPAKAT--I--KEANSESFVVR 133 (214)
Q Consensus 60 ~~--~~~~~~~sv~~al~~~~~~~~~vl~~~~d~P~v~~~~i~~~i~~~~~~~~~i~~~~~~~~--~--~~~~~~g~v~~ 133 (214)
.. ...+..++++.|+..+. ..+.++++.||. + ....++++++.+...++.+++.+..++ . ...+ +|.+..
T Consensus 100 ~~~~~~~gt~~al~~a~~~~~-~~~~~lv~~~D~-~-~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~g~v~~~-~g~v~~ 175 (259)
T 1tzf_A 100 VDTGDSSMTGGRLKRVAEYVK-DDEAFLFTYGDG-V-ADLDIKATIDFHKAHGKKATLTATFPPGRFGALDIQ-AGQVRS 175 (259)
T ss_dssp EECCSSCCHHHHHHHTGGGTT-TSSCEEEEETTE-E-ECCCHHHHHHHHHHHCCSEEEEEECCCCCSEEEEEE-TTEEEE
T ss_pred eecccccCcHHHHHHHHHhcC-CCCcEEEEECCE-e-cccCHHHHHHHHHHhCCeEEEEEecCCCCccEEEEc-CCEEEE
Confidence 11 12345778888888774 246788899998 3 456789999887654443333333322 1 1123 455554
Q ss_pred ecCc--cchhhhc-CCcccChHHHHHHHHHHHhcCCC-CCcHHHHHHhCCCCeEEEecCCCCcccCCHHHHHHHHHHhhc
Q 028081 134 TLDR--KTLWEMQ-TPQVIKPDLLKKGFELVNREGLE-VTDDVSIVEHLKHPVYITEGSYTNIKVTTPDDLLIAERILNL 209 (214)
Q Consensus 134 ~~~r--~~~~~~~-~p~~f~~~~l~~~~~~~~~~~~~-~~d~~~~~~~~g~~i~~v~~~~~~~~Idtp~Dl~~a~~~~~~ 209 (214)
+.+. ...+..+ .-+.|+.+.+. .+. ..... .++....+.+.| ++..+..+..+.|||||+||..++..+..
T Consensus 176 ~~ekp~~~~~~~~~Giy~~~~~~l~-~l~---~~~~~~~~~~i~~~~~~~-~v~~~~~~~~~~dI~t~~d~~~a~~~~~~ 250 (259)
T 1tzf_A 176 FQEKPKGDGAMINGGFFVLNPSVID-LID---NDATTWEQEPLMTLAQQG-ELMAFEHPGFWQPMDTLRDKVYLEGLWEK 250 (259)
T ss_dssp EEESCSCCSCCEECCCEEECGGGGG-GCC---STTCCTTTHHHHHHHHTT-CEEEEEECSCEEECCSHHHHHHHHHHHHT
T ss_pred EEecCCCCCceEEEEEEEeCHHHHH-hhc---ccccccHHHHHHHHHHcC-CEEEEEeCcEEEeCCCHHHHHHHHHHHhc
Confidence 3321 1111122 24677766542 121 11122 244444443444 67766666689999999999999998865
Q ss_pred c
Q 028081 210 S 210 (214)
Q Consensus 210 ~ 210 (214)
.
T Consensus 251 ~ 251 (259)
T 1tzf_A 251 G 251 (259)
T ss_dssp T
T ss_pred C
Confidence 3
|
| >2qh5_A PMI, ALGA, mannose-6-phosphate isomerase; structural genomics, PSI, protein structure initi nysgrc; 2.30A {Helicobacter pylori} | Back alignment and structure |
|---|
Probab=99.61 E-value=1.4e-14 Score=117.49 Aligned_cols=201 Identities=13% Similarity=0.122 Sum_probs=113.2
Q ss_pred CCCceeeee-CCeehHHHHHHHHhcCCCcCeEEEEeCCCchHHHHHHHHh-cCC-cEEEe--cCCccHHHHHHHHHhhcc
Q 028081 4 NMPKQYLPL-LGQPIALYSFYTFSRMVEVKEIVVVCDPSYSDIFEETKEK-INV-DLKFS--LPGKERQDSVYSGLQEVD 78 (214)
Q Consensus 4 ~~~K~l~~l-~gkpli~~~i~~~~~~~~~~~iiVv~~~~~~~~~~~~~~~-~~~-~~~~~--~~~~~~~~sv~~al~~~~ 78 (214)
+.||+|+++ +|+|||+|+++++.++ +++|+|++++...+.+.+.+.. ++. .+.++ ....+...++..|+..+.
T Consensus 25 ~~pK~ll~i~gg~pli~~~l~~l~~~--~~~i~vv~~~~~~~~i~~~~~~~~~~~~~~~i~~~~~~gt~~al~~a~~~l~ 102 (308)
T 2qh5_A 25 LYPKQFLKLFDHKSLFELSFKRNASL--VDETLIVCNEKHYFLALEEIKNEIKNKSVGFLLESLSKNTANAIALSALMSD 102 (308)
T ss_dssp -CCGGGCTTBTTBCHHHHHHHHHHTT--CSEEEEEEEGGGHHHHHHHTTTTCSSCEEEEEEESSCCCHHHHHHHHHHTSC
T ss_pred CCCCEEEECCCCCCHHHHHHHHHHcc--CCCEEEEEChhHHHHHHHHHHHhhCCCccEEEeCCCCCChHHHHHHHHHHhC
Confidence 479999999 6999999999999887 7999999987643456666655 554 44333 223455788888888774
Q ss_pred cCCCeEEEEcCCCCCCCHHHHHHHHHH---HHhcCC--eEEeeecccc--EEE--ecCCCceeeecCccch---------
Q 028081 79 FNSELVCIHDSARPLVLSKDVQKVLMD---ALRVGA--AVLGVPAKAT--IKE--ANSESFVVRTLDRKTL--------- 140 (214)
Q Consensus 79 ~~~~~vl~~~~d~P~v~~~~i~~~i~~---~~~~~~--~i~~~~~~~~--~~~--~~~~g~v~~~~~r~~~--------- 140 (214)
..+.++++.||.|+++++.++++++. +...++ .+.+.+..+. ... .+++|.+..+.+....
T Consensus 103 -~~~~~lv~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~g~i~~d~~~~V~~~~Ekp~~~~~~~~~~~ 181 (308)
T 2qh5_A 103 -KEDLLIVTPSDHLIKDLQAYENAIKKAIDLAQKGFLVTFGVSIDKPNTEFGYIESPNGLDVKRFIEKPSLDKAIEFQKS 181 (308)
T ss_dssp -TTSEEEEEESSCBCCCHHHHHHHHHHHHHHHHTTCEEEEEEECSSCCTTSEEEECSSSSBCSEEEESCCHHHHHHHHHH
T ss_pred -CCCeEEEEcCCccccCHHHHHHHHHHHHHHHhcCCEEEEEEecCCCCCCceEEEECCCCEEEEEEECCChHHHHHHhhc
Confidence 23568999999999999999999986 333343 2333443322 122 2334555443321111
Q ss_pred --hhhc-CCcccChHHHHHHHHHHHhc--------------C----CCCC---cHHH----------HHHhCCCCeEEEe
Q 028081 141 --WEMQ-TPQVIKPDLLKKGFELVNRE--------------G----LEVT---DDVS----------IVEHLKHPVYITE 186 (214)
Q Consensus 141 --~~~~-~p~~f~~~~l~~~~~~~~~~--------------~----~~~~---d~~~----------~~~~~g~~i~~v~ 186 (214)
+..+ .-++|+.+.|.+.+...... . ++++ .+.. .+.+.|.++.+++
T Consensus 182 g~~~~n~Giy~~~~~~ll~~l~~~~p~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~sid~~lle~~~~v~~~~ 261 (308)
T 2qh5_A 182 GGFYFNSGMFVFQAGVFLDELKKHAPTILKGCERAFESLENAYFFEKKIARLSEKSMQDLEDMSIDIALMQQSHKIKMVE 261 (308)
T ss_dssp CCEEEEEEEEEEEHHHHHHHHHHHCHHHHHHHHHHGGGCEEECCSSSCEEEECHHHHHTSCCCCHHHHTTTTCSCEEEEE
T ss_pred CCeEEEeEEEEEEHHHHHHHHHHhChHHHHHHHHHhhccccccccchhhhhhhHHHHhhCcccceeHHHhcCCCcEEEEE
Confidence 1111 23678776654444321100 0 2222 1111 1233567898888
Q ss_pred cCCCCcccCCHHHHHHHHHHh
Q 028081 187 GSYTNIKVTTPDDLLIAERIL 207 (214)
Q Consensus 187 ~~~~~~~Idtp~Dl~~a~~~~ 207 (214)
.+..|.||+||+||..++...
T Consensus 262 ~~~~w~digt~~~l~~~~~~~ 282 (308)
T 2qh5_A 262 LNAKWSDLGNFNALFEEAANE 282 (308)
T ss_dssp CCSCCBC--------------
T ss_pred CCCceeCCCCHHHHHHHhhcC
Confidence 878899999999999887643
|
| >3brk_X Glucose-1-phosphate adenylyltransferase; ADP-glucose pyrophosphorylase, allostery, kinetics, structure-function relationships; 2.10A {Agrobacterium tumefaciens} | Back alignment and structure |
|---|
Probab=99.58 E-value=1.7e-14 Score=121.83 Aligned_cols=202 Identities=11% Similarity=0.063 Sum_probs=123.6
Q ss_pred CCCCceeeeeCCe-ehHHHHHHHHhcCCCcCeEEEEeCCCchHHHHHHHHh-cCC-------cEEEecC------C---c
Q 028081 3 ANMPKQYLPLLGQ-PIALYSFYTFSRMVEVKEIVVVCDPSYSDIFEETKEK-INV-------DLKFSLP------G---K 64 (214)
Q Consensus 3 ~~~~K~l~~l~gk-pli~~~i~~~~~~~~~~~iiVv~~~~~~~~~~~~~~~-~~~-------~~~~~~~------~---~ 64 (214)
.++||+|++++|+ |||+|+++++.+++ +++|+|++++.. +.+.+.+.. ++. .+.+... . .
T Consensus 31 ~~~pK~llpi~gk~pli~~~l~~l~~~g-i~~i~vv~~~~~-~~i~~~~~~~~~~~~~~~~~~v~i~~~~~~~~~~~~~~ 108 (420)
T 3brk_X 31 DRRAKPAVYFGGKARIIDFALSNALNSG-IRRIGVATQYKA-HSLIRHLQRGWDFFRPERNESFDILPASQRVSETQWYE 108 (420)
T ss_dssp SSSCGGGSEETTTEETHHHHHHHHHHTT-CCEEEEEECTTC-HHHHHHHHHHSCCCCGGGTCEEEEECCC-------CCC
T ss_pred cCCcccccccCCCCcHHHHHHHHHHhCC-CCeEEEEeCCCh-HHHHHHHhhhhccccccccCCEEEeCccccccCCcccc
Confidence 4579999999999 99999999999885 899999999865 445555544 432 2334321 1 4
Q ss_pred cHHHHHHHHHhhccc-CCCeEEEEcCCCCCCCHHHHHHHHHHHHhcCC--eEEeeec--ccc----EEEecCCCceeeec
Q 028081 65 ERQDSVYSGLQEVDF-NSELVCIHDSARPLVLSKDVQKVLMDALRVGA--AVLGVPA--KAT----IKEANSESFVVRTL 135 (214)
Q Consensus 65 ~~~~sv~~al~~~~~-~~~~vl~~~~d~P~v~~~~i~~~i~~~~~~~~--~i~~~~~--~~~----~~~~~~~g~v~~~~ 135 (214)
+..++++.|+..+.. ..+.+++++||+ +. ...++++++.+...++ .+.+.+. .++ ....+++|.+..+.
T Consensus 109 Gt~~al~~a~~~l~~~~~~~~lv~~~D~-~~-~~~l~~l~~~~~~~~~~~tl~~~~~~~~~~~~~g~v~~d~~g~v~~~~ 186 (420)
T 3brk_X 109 GTADAVYQNIDIIEPYAPEYMVILAGDH-IY-KMDYEYMLQQHVDSGADVTIGCLEVPRMEATGFGVMHVNEKDEIIDFI 186 (420)
T ss_dssp CHHHHHHTTHHHHHHHCCSEEEEEESSC-EE-CBCTHHHHHHHHHTTCSEEEEEEEEETTGGGGSEEEEECTTSBEEEEE
T ss_pred CCHHHHHHHHHHHHhcCCCEEEEecccE-EE-chHHHHHHHHHHHcCCeEEEEEeecCccccCcccEEEECCCCcEEEeE
Confidence 567889988887742 247899999999 54 4568899988765443 3444443 222 12224456665433
Q ss_pred Cccc----------hhhhc-CCcccChHHHHHHHHHHHh---cC-CCCCcHHHHHHhCCCCeEEEec-----------CC
Q 028081 136 DRKT----------LWEMQ-TPQVIKPDLLKKGFELVNR---EG-LEVTDDVSIVEHLKHPVYITEG-----------SY 189 (214)
Q Consensus 136 ~r~~----------~~~~~-~p~~f~~~~l~~~~~~~~~---~~-~~~~d~~~~~~~~g~~i~~v~~-----------~~ 189 (214)
+... .+... .-+.|+.+.|.+++..... +. .+.+|....+...| ++..+.. +.
T Consensus 187 ekp~~~~~~~~~~~~~~~~~Giy~~~~~~l~~~l~~~~~~~~~~~~~~~d~l~~li~~g-~v~~~~~~~~~~~~~~~~~~ 265 (420)
T 3brk_X 187 EKPADPPGIPGNEGFALASMGIYVFHTKFLMEAVRRDAADPTSSRDFGKDIIPYIVEHG-KAVAHRFADSCVRSDFEHEP 265 (420)
T ss_dssp ESCSSCCCBTTBTTEEEEEEEEEEEEHHHHHHHHTSSCCC----------CTTHHHHHS-CEEEEEHHHHBCCCTTCSSC
T ss_pred eCCCccccccccccceEEeeeeEEEeHHHHHHHHHHhcccCCccccchHHHHHHHhhhC-cEEEEEeccccccccccCCC
Confidence 2110 01111 2367787766555432111 11 12234333333345 7776554 56
Q ss_pred CCcccCCHHHHHHHHHHhhc
Q 028081 190 TNIKVTTPDDLLIAERILNL 209 (214)
Q Consensus 190 ~~~~Idtp~Dl~~a~~~~~~ 209 (214)
.+++|+||+||..|+..+..
T Consensus 266 ~~~dI~t~~d~~~a~~~ll~ 285 (420)
T 3brk_X 266 YWRDVGTIDAYWQANIDLTD 285 (420)
T ss_dssp CEECCCSHHHHHHHHHHTTS
T ss_pred EEEECCCHHHHHHHHHHHhC
Confidence 79999999999999987654
|
| >2xme_A CTP-inositol-1-phosphate cytidylyltransferase; CDP-inositol, DI-MYO-inositol phosphate; 1.89A {Archaeoglobus fulgidus} PDB: 2xmh_A* | Back alignment and structure |
|---|
Probab=99.58 E-value=3.9e-15 Score=115.89 Aligned_cols=91 Identities=16% Similarity=0.169 Sum_probs=68.8
Q ss_pred CceeeeeCCeehHHHHHHHHhcCCCcCeEEEEeCCCchHHHHHH-HHhcCCcEEEecC-C--ccHHHHHHHHHhhcccCC
Q 028081 6 PKQYLPLLGQPIALYSFYTFSRMVEVKEIVVVCDPSYSDIFEET-KEKINVDLKFSLP-G--KERQDSVYSGLQEVDFNS 81 (214)
Q Consensus 6 ~K~l~~l~gkpli~~~i~~~~~~~~~~~iiVv~~~~~~~~~~~~-~~~~~~~~~~~~~-~--~~~~~sv~~al~~~~~~~ 81 (214)
||+|++++|+|||+|+++++.++ +++|+|++ +.. +.+.+. .+.++..+.++.. + .++.+++..|+..+.
T Consensus 36 ~K~l~~i~g~pli~~~l~~l~~~--~~~i~vv~-~~~-~~~~~~~~~~~~~~~~~v~~~~~~~g~~~~i~~a~~~~~--- 108 (232)
T 2xme_A 36 PKPLVRVGGCEIILRTMKLLSPH--VSEFIIVA-SRY-ADDIDAFLKDKGFNYKIVRHDRPEKGNGYSLLVAKNHVE--- 108 (232)
T ss_dssp CGGGCEETTEEHHHHHHHHHGGG--EEEEEEEE-STT-HHHHHHHHTTSCCCEEEEECSCGGGCHHHHHHTTGGGCC---
T ss_pred CcEEeEECCEEHHHHHHHHHHHh--CCEEEEEe-CCh-HHHHHHHHHhcCCcEEEEECCCCCCCcHHHHHHHHHHCC---
Confidence 89999999999999999999876 79999999 544 233332 3445545555542 2 345888999988875
Q ss_pred CeEEEEcCCCCCCCHHHHHHHHH
Q 028081 82 ELVCIHDSARPLVLSKDVQKVLM 104 (214)
Q Consensus 82 ~~vl~~~~d~P~v~~~~i~~~i~ 104 (214)
+.++++.||+|+ +++.++++++
T Consensus 109 ~~~lv~~~D~p~-~~~~~~~l~~ 130 (232)
T 2xme_A 109 DRFILTMGDHVY-SQQFIEKAVR 130 (232)
T ss_dssp SSEEEEETTEEE-CHHHHHHHTT
T ss_pred CCEEEEcCCccc-CHHHHHHHHh
Confidence 346778999998 9999888876
|
| >1yp2_A Glucose-1-phosphate adenylyltransferase small subunit; ADP-glucose synthase, ADP-glucose pyrophosphorylase, agpase B; HET: PMB; 2.11A {Solanum tuberosum} SCOP: b.81.1.4 c.68.1.6 PDB: 1yp3_A* 1yp4_A* | Back alignment and structure |
|---|
Probab=99.51 E-value=8.2e-13 Score=112.36 Aligned_cols=204 Identities=11% Similarity=0.012 Sum_probs=128.4
Q ss_pred CCCCceeeeeCCe-ehHHHHHHHHhcCCCcCeEEEEeCCCchHHHHHHHHh-cC--C-------cEEEec--C-------
Q 028081 3 ANMPKQYLPLLGQ-PIALYSFYTFSRMVEVKEIVVVCDPSYSDIFEETKEK-IN--V-------DLKFSL--P------- 62 (214)
Q Consensus 3 ~~~~K~l~~l~gk-pli~~~i~~~~~~~~~~~iiVv~~~~~~~~~~~~~~~-~~--~-------~~~~~~--~------- 62 (214)
.++||+|++++|+ |||+|+++++.+++ +++|+|++++.. +.+.+.+.. ++ . .+.+.. .
T Consensus 39 ~~~pK~llpi~g~~pli~~~l~~l~~~g-~~~i~vv~~~~~-~~i~~~~~~~~~~~~~~~~~~~~v~i~~~~~~~~~~~~ 116 (451)
T 1yp2_A 39 KKRAKPAVPLGANYRLIDIPVSNCLNSN-ISKIYVLTQFNS-ASLNRHLSRAYASNMGGYKNEGFVEVLAAQQSPENPDW 116 (451)
T ss_dssp TTSCGGGCEETTTEETTHHHHHHHHHTT-CCEEEEEESCCC-HHHHHHHHHHCC--------CCEEEEEESCSSTTSCCC
T ss_pred cCCcceeeEECCcceeHHHHHHHHHHCC-CCEEEEEeccCH-HHHHHHHhhhhhcccccccccCcEEEeccccccccccc
Confidence 4579999999999 99999999999885 899999999875 344444332 21 1 123321 1
Q ss_pred CccHHHHHHHHHhhccc-CCCeEEEEcCCCCCCCHHHHHHHHHHHHhcCC--eEEeeecc--cc----EEEecCCCceee
Q 028081 63 GKERQDSVYSGLQEVDF-NSELVCIHDSARPLVLSKDVQKVLMDALRVGA--AVLGVPAK--AT----IKEANSESFVVR 133 (214)
Q Consensus 63 ~~~~~~sv~~al~~~~~-~~~~vl~~~~d~P~v~~~~i~~~i~~~~~~~~--~i~~~~~~--~~----~~~~~~~g~v~~ 133 (214)
..+..++++.|+..+.. ..+.++++.||+ +.+ ..++++++.+...++ .+.+.+.. ++ ....+++|.+..
T Consensus 117 ~~Gt~~al~~a~~~~~~~~~~~~lv~~~D~-~~~-~~l~~l~~~~~~~~~~~tl~~~~~~~~~~~~~g~v~~d~~~~v~~ 194 (451)
T 1yp2_A 117 FQGTADAVRQYLWLFEEHTVLEYLILAGDH-LYR-MDYEKFIQAHRETDADITVAALPMDEKRATAFGLMKIDEEGRIIE 194 (451)
T ss_dssp CCSHHHHHHHTHHHHTTSCCSEEEEECSCE-ECC-CCHHHHHHHHHHTTCSEEEEEEEECHHHHTTSEEEEECTTSBEEE
T ss_pred ccCcHHHHHHHHHHHHhcCCCeEEEecCcE-EEc-CCHHHHHHHHHHcCCcEEEEEEEcChhhcccCCEEEECCCCCEEE
Confidence 23567889988887752 247899999999 544 568899988765544 23334442 11 222344566654
Q ss_pred ecCccch------------------------hhhc-CCcccChHHHHHHHHHHHhcCCCC-CcHHHHHHhCCCCeEEEec
Q 028081 134 TLDRKTL------------------------WEMQ-TPQVIKPDLLKKGFELVNREGLEV-TDDVSIVEHLKHPVYITEG 187 (214)
Q Consensus 134 ~~~r~~~------------------------~~~~-~p~~f~~~~l~~~~~~~~~~~~~~-~d~~~~~~~~g~~i~~v~~ 187 (214)
+.++... +... .-+.|+.+.|.++++........+ .+....+...|.++..+..
T Consensus 195 ~~ekp~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~Giy~~~~~~l~~~l~~~~~~~~~~~~~~l~~~i~~g~~v~~~~~ 274 (451)
T 1yp2_A 195 FAEKPQGEQLQAMKVDTTILGLDDKRAKEMPFIASMGIYVISKDVMLNLLRDKFPGANDFGSEVIPGATSLGMRVQAYLY 274 (451)
T ss_dssp EEESCCHHHHHHTCCCGGGGSCCHHHHHHCCEEEEEEEEEEEHHHHHHHHHTTCTTCCCTTTTHHHHHHHTTCCEEEEEC
T ss_pred EEECCCchhhccccccccccccccccccCCcceEEeeEEEEcHHHHHHHHHhhcccccchHhhHHHHHHhcCCceEEEEe
Confidence 4321110 0111 136788777666554321111222 2333334455788888877
Q ss_pred CCCCcccCCHHHHHHHHHHhhcc
Q 028081 188 SYTNIKVTTPDDLLIAERILNLS 210 (214)
Q Consensus 188 ~~~~~~Idtp~Dl~~a~~~~~~~ 210 (214)
+..|.+|+||+||..++..+..+
T Consensus 275 ~~~w~digt~~~l~~a~~~l~~~ 297 (451)
T 1yp2_A 275 DGYWEDIGTIEAFYNANLGITKK 297 (451)
T ss_dssp CSCCEECSSHHHHHHHHHGGGCS
T ss_pred CCEEEECCCHHHHHHHHHHHhcc
Confidence 77899999999999999877654
|
| >2x65_A Mannose-1-phosphate guanylyltransferase; nucleotidyltransferase; HET: M1P; 2.10A {Thermotoga maritima} PDB: 2x5z_A* 2x60_A* 2x5s_A* | Back alignment and structure |
|---|
Probab=99.48 E-value=4.4e-13 Score=109.91 Aligned_cols=200 Identities=13% Similarity=0.154 Sum_probs=116.8
Q ss_pred CCCCceeeeeCC-eehHHHHHHHHhcCCCcCeEEEEeCCCchHHHHHHHHhcC-CcEEEecCCccHHHHHHHHHhhcccC
Q 028081 3 ANMPKQYLPLLG-QPIALYSFYTFSRMVEVKEIVVVCDPSYSDIFEETKEKIN-VDLKFSLPGKERQDSVYSGLQEVDFN 80 (214)
Q Consensus 3 ~~~~K~l~~l~g-kpli~~~i~~~~~~~~~~~iiVv~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~sv~~al~~~~~~ 80 (214)
...||+|++++| +|||+|+++++..+..+++|+|+|+++....+.+.+...+ ..+..-+.+.+...++..|...+. +
T Consensus 21 ~~~pK~ll~l~g~~pli~~~l~~l~~~~~~~~iivvt~~~~~~~i~~~l~~~~~~~ii~e~~~~gta~ai~~a~~~~~-~ 99 (336)
T 2x65_A 21 PETPKQFLKLFGNKSLMRWTFERVLEEMDPKDVIVVTHKDYVERTKKELPELPDENIIAEPMKKNTAPACFIGTKLAD-D 99 (336)
T ss_dssp TTCBGGGCCCBTTBCHHHHHHHHHHTTCCGGGEEEEEEGGGHHHHHHHCTTSCGGGEEEESSCCCHHHHHHHHHTTSC-T
T ss_pred CCCCceEEECCCCCcHHHHHHHHHhccCCCCcEEEEcChHHHHHHHHHhhccccceEEeCCCCCCcHHHHHHHHHhhC-C
Confidence 357999999999 9999999999998745899999999864344555444322 133223333445677877776553 3
Q ss_pred CCeEEEEcCCCCCCCHHHHHHHHHH----HHhcCCeE--Eeeecccc--EEEe--cCC-----CceeeecCccch-----
Q 028081 81 SELVCIHDSARPLVLSKDVQKVLMD----ALRVGAAV--LGVPAKAT--IKEA--NSE-----SFVVRTLDRKTL----- 140 (214)
Q Consensus 81 ~~~vl~~~~d~P~v~~~~i~~~i~~----~~~~~~~i--~~~~~~~~--~~~~--~~~-----g~v~~~~~r~~~----- 140 (214)
.+.++++.||+|+.+++.++.+++. +.+.+..+ .+.|.... ..++ +++ +.+....+....
T Consensus 100 ~~~~lvl~~D~~~~~~~~~~~~l~~~~~~~~~~~~~vt~~i~p~~~~~~yG~I~~~~~~~~~~~~V~~f~EKp~~~~a~~ 179 (336)
T 2x65_A 100 DEPVLVLPADHRIPDTKKFWKTVKKALDALEKYDGLFTFGIVPTRPETGYGYIEIGEELEEGVHKVAQFREKPDLETAKK 179 (336)
T ss_dssp TCEEEEEETTCBCCCHHHHHHHHHHHHHHHHHHCSEEEEEECCCSCCSSSEEEEEEEEEETTEEEEEEEEESCCHHHHHH
T ss_pred CCEEEEEcCCceeccHHHHHHHHHHHHHHHHhcCCeEEEEeecccCCCCceEEEECCccCCCccEEEEEEECCChHHHHH
Confidence 4679999999999999887766654 33324322 22333221 1111 211 334433221111
Q ss_pred ------hhhc-CCcccChHHHHHHHHHHHhc------CCCCCcH---HHHH------------HhCCCCeEEEecCCCCc
Q 028081 141 ------WEMQ-TPQVIKPDLLKKGFELVNRE------GLEVTDD---VSIV------------EHLKHPVYITEGSYTNI 192 (214)
Q Consensus 141 ------~~~~-~p~~f~~~~l~~~~~~~~~~------~~~~~d~---~~~~------------~~~g~~i~~v~~~~~~~ 192 (214)
+..+ .-+.|+.+.|.+.++..... ...-..+ ...+ .+.+.++.+++.+..|.
T Consensus 180 ~~~~g~y~~n~Giy~~~~~~ll~~l~~~~p~~~~~~~~~~~~~e~~~~~~~~~~~~~sidy~vme~~~~v~v~~~~~~W~ 259 (336)
T 2x65_A 180 FVESGRFLWNSGMFLWKAREFIEEVKVCEPSIYENLKDVDPRNFEELKKAYEKVPSISVDYAVMEKSKKVRVVKADFEWS 259 (336)
T ss_dssp HHHHTCEEEEEEEEEEEHHHHHHHHHHHCHHHHHHHTTCCTTCHHHHHHHHHHSCCCCHHHHTTTTCSCEEEEECSSCCB
T ss_pred HHhcCCeEEEeeeEEEEHHHHHHHHHHHCHHHHHHHHHhhhhhhhHHHHHHHhCccccHHHHHhcCCCeEEEEEecCCCc
Confidence 1111 23567776664444321110 0000011 1111 12357888888888999
Q ss_pred ccCCHHHHHHH
Q 028081 193 KVTTPDDLLIA 203 (214)
Q Consensus 193 ~Idtp~Dl~~a 203 (214)
||+|++||..+
T Consensus 260 DiGt~~~l~~~ 270 (336)
T 2x65_A 260 DLGNWSSVREI 270 (336)
T ss_dssp CCCSHHHHHHH
T ss_pred CCCCHHHHHhh
Confidence 99999999887
|
| >2cu2_A Putative mannose-1-phosphate guanylyl transferase; mannose-1-phosphate geranyltransferase, thermus thermophilus structural genomics; 2.20A {Thermus thermophilus} SCOP: b.81.4.1 c.68.1.20 | Back alignment and structure |
|---|
Probab=99.38 E-value=6.1e-13 Score=109.15 Aligned_cols=198 Identities=12% Similarity=0.113 Sum_probs=113.3
Q ss_pred CCCceeeeeCC-eehHHHHHHHHhcCCCcCeEEEEeCCCchHHHHHHHHhcCCcEEEecCCccHHHHHHHHHhhcc--cC
Q 028081 4 NMPKQYLPLLG-QPIALYSFYTFSRMVEVKEIVVVCDPSYSDIFEETKEKINVDLKFSLPGKERQDSVYSGLQEVD--FN 80 (214)
Q Consensus 4 ~~~K~l~~l~g-kpli~~~i~~~~~~~~~~~iiVv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sv~~al~~~~--~~ 80 (214)
+.||+|++++| +|||+|+++++..+..+++|+|+|+++....+.+.+.. .....-+.+.+...++..|.. +. ..
T Consensus 23 ~~pK~ll~l~G~~pli~~~l~~l~~~~~~~~iiVvt~~~~~~~i~~~l~~--~~~i~e~~~~gta~ai~~a~~-l~~~~~ 99 (337)
T 2cu2_A 23 DRPKPFLPLFEGKTLLEATLERLAPLVPPERTLLAVRRDQEAVARPYADG--IRLLLEPLGRDTAGAVLLGVA-EALKEG 99 (337)
T ss_dssp TBCGGGCBCGGGCBHHHHHHHHHTTTSCGGGEEEEEEGGGHHHHGGGCSS--SEEEEESSCCHHHHHHHHHHH-HHHHHT
T ss_pred CCCceEEEcCCCChHHHHHHHHHhCcCCCCCEEEEcChHHHHHHHHHhcc--CceEecCCCCCcHHHHHHHHH-HhccCC
Confidence 56999999999 99999999999987458999999987643333322221 122112223334566666655 42 12
Q ss_pred CCeEEEEcCCCCCCCHHHHHHHHHHHHh---cCCeE--Eeeecccc----EEEecCC----CceeeecCccch-------
Q 028081 81 SELVCIHDSARPLVLSKDVQKVLMDALR---VGAAV--LGVPAKAT----IKEANSE----SFVVRTLDRKTL------- 140 (214)
Q Consensus 81 ~~~vl~~~~d~P~v~~~~i~~~i~~~~~---~~~~i--~~~~~~~~----~~~~~~~----g~v~~~~~r~~~------- 140 (214)
.+.++++.||+|+.+++.++.+++.+.. .+..+ .+.|.... ....+++ +.+....+....
T Consensus 100 ~~~~lvl~~D~~~~~~~~~~~~l~~~~~~~~~~~~vt~~i~p~~~~t~yG~I~~~~~~~~~~~V~~f~EKp~~~~a~~~~ 179 (337)
T 2cu2_A 100 AERLLVLPADHYVGDDEAYREALATMLEAAEEGFVVALGLRPTRPETEYGYIRLGPREGAWYRGEGFVEKPSYAEALEYI 179 (337)
T ss_dssp CSEEEEEESSCEESCHHHHHHHHHHHHHHCCTTCEEEEEECCSSCCSSSCEEEEEEEETTEEEEEEEECCCCHHHHHHHH
T ss_pred CCEEEEEECCccCCCHHHHHHHHHHHHHHHHcCCeEEEeeccCCCCCCceEEEECCcccccCeEEEEEeCCChHHHHHHh
Confidence 4789999999999999988887765421 23322 22233221 1111211 334433321110
Q ss_pred ---hhhc-CCcccChHHHHHHHHHHHhc----------CCCCCcHHH---------HHHhCCCCeEEEecCCCCcccCCH
Q 028081 141 ---WEMQ-TPQVIKPDLLKKGFELVNRE----------GLEVTDDVS---------IVEHLKHPVYITEGSYTNIKVTTP 197 (214)
Q Consensus 141 ---~~~~-~p~~f~~~~l~~~~~~~~~~----------~~~~~d~~~---------~~~~~g~~i~~v~~~~~~~~Idtp 197 (214)
+..+ .-+.|+.+.|.+.++..... +..+++... .+.+.+.++.+++.+..|.||+|+
T Consensus 180 ~~g~~~n~Giy~f~~~~ll~~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~sidy~vme~~~~v~v~~~~~~W~DvGt~ 259 (337)
T 2cu2_A 180 RKGYVWNGGVFAFAPATMAELFRRHLPSHHEALERLLAGASLEEVYAGLPKISIDYGVMEKAERVRVVLGRFPWDDVGNW 259 (337)
T ss_dssp HTTCEEEEEEEEECHHHHHHHHHHHCHHHHHHHHHHHTTCCHHHHHHTSCCCCHHHHTGGGCSSEEEEEECSCEECCCST
T ss_pred hcCCEEEEEEEEEeHHHHHHHHHHHCHHHHHHHHHHhcCCcHHHHHhhCccchHHHHHhhCCCcEEEEEeCCcEEcCCCH
Confidence 1111 23678877664444332100 000000011 122346788888888889999999
Q ss_pred HHHHHHH
Q 028081 198 DDLLIAE 204 (214)
Q Consensus 198 ~Dl~~a~ 204 (214)
++|..+.
T Consensus 260 ~~l~~~~ 266 (337)
T 2cu2_A 260 RALERVF 266 (337)
T ss_dssp THHHHHH
T ss_pred HHHHHHh
Confidence 9998774
|
| >2i5e_A Hypothetical protein MM_2497; APC86122, methanosarcina mazei GO1, hypothetic protein, STRU genomics, PSI-2, protein structure initiative; 2.10A {Methanosarcina mazei} SCOP: c.68.1.21 | Back alignment and structure |
|---|
Probab=99.31 E-value=2.5e-11 Score=93.06 Aligned_cols=81 Identities=14% Similarity=0.131 Sum_probs=62.3
Q ss_pred eCCeehHHHHHHHHhcCCCcCeE-EEEeCCCchHHHHHHHHhcCCcEEEecCCccHHHHHHHHHhhcccCCCeEEEEcCC
Q 028081 12 LLGQPIALYSFYTFSRMVEVKEI-VVVCDPSYSDIFEETKEKINVDLKFSLPGKERQDSVYSGLQEVDFNSELVCIHDSA 90 (214)
Q Consensus 12 l~gkpli~~~i~~~~~~~~~~~i-iVv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sv~~al~~~~~~~~~vl~~~~d 90 (214)
..|+|||.|++++++.+. ++.+ +|++++... .+. ++ +.++.+..+..+++.+|++.+ .+.++++.||
T Consensus 30 ~l~~~ll~~vl~~l~~~~-~~~v~vvv~~~~~~---~~~---~~--~~~v~~~~gl~~sl~~a~~~~---~~~vlvi~~D 97 (211)
T 2i5e_A 30 EFVELMLNQVISSLKGAG-IEQVDILSPSVYGL---EEM---TE--ARVLLDEKDLNEALNRYLKEA---EEPVLIVMAD 97 (211)
T ss_dssp HHHHHHHHHHHHHHHHTT-CSEEEEEESSCTTC---SSC---CS--SEEEECCSCHHHHHHHHHHHC---CSCEEEECSC
T ss_pred HHHHHHHHHHHHHHHHcC-CceEEEEEcCcHHH---Hhh---cC--CEEEECCCCHHHHHHHHHHhc---CCCEEEEcCC
Confidence 568999999999999875 7899 898887542 111 23 333433355678888888776 3679999999
Q ss_pred CCCCCHHHHHHHHH
Q 028081 91 RPLVLSKDVQKVLM 104 (214)
Q Consensus 91 ~P~v~~~~i~~~i~ 104 (214)
+|++++++|+++++
T Consensus 98 ~P~l~~~~i~~l~~ 111 (211)
T 2i5e_A 98 LPLLSPEHIKEISS 111 (211)
T ss_dssp CTTCCHHHHHHHTT
T ss_pred cCCCCHHHHHHHHc
Confidence 99999999999987
|
| >3cgx_A Putative nucleotide-diphospho-sugar transferase; YP_389115.1, joint center for structural genomics; 1.90A {Desulfovibrio desulfuricans subsp} | Back alignment and structure |
|---|
Probab=98.93 E-value=4.7e-08 Score=76.33 Aligned_cols=100 Identities=16% Similarity=0.042 Sum_probs=68.7
Q ss_pred eehHHHHHHHHhcCCCcCeEEEEeCCCchHHH--HHHHHhcCCcEEEe-cCCccHHHHHHHHHhhc-ccCCCeEEEEcCC
Q 028081 15 QPIALYSFYTFSRMVEVKEIVVVCDPSYSDIF--EETKEKINVDLKFS-LPGKERQDSVYSGLQEV-DFNSELVCIHDSA 90 (214)
Q Consensus 15 kpli~~~i~~~~~~~~~~~iiVv~~~~~~~~~--~~~~~~~~~~~~~~-~~~~~~~~sv~~al~~~-~~~~~~vl~~~~d 90 (214)
++|+.|+++++.++. .+.+++++++.....+ ..+. +..+.+. ..+.+..+++.+|+..+ ....+.|+++.+|
T Consensus 37 ~~ll~~tl~~~~~~~-~~~vvvvt~~~~~~~~~~~~~~---~~~~~~~~q~~~gLg~rl~~a~~~~~~~~~~~vliigaD 112 (242)
T 3cgx_A 37 RHFVQDMLQGLARLH-ADLHICYVPGDADLPEKFKAWL---GPQHMFAAQQGLDLGERMKHAMQKAFDDGYDRVVLMGSD 112 (242)
T ss_dssp HHHHHHHHHHHTTSS-SEEEEEECCCCTTHHHHHHHHH---CTTSEEEECCSSSHHHHHHHHHHHHHHTTCSEEEEECSS
T ss_pred HHHHHHHHHHHHhCC-CCEEEEEcCCchhhhhhhhhhc---cCCcEEecCCCCCHHHHHHHHHHHHHhCCCCeEEEEcCC
Confidence 579999999999875 5777777776543322 3332 2223333 34556788899998876 3346789999999
Q ss_pred CCCCCHHHHHHHHHHHHhcCCeEEeeeccc
Q 028081 91 RPLVLSKDVQKVLMDALRVGAAVLGVPAKA 120 (214)
Q Consensus 91 ~P~v~~~~i~~~i~~~~~~~~~i~~~~~~~ 120 (214)
+|++++++|+++++.+...+ + ...|..+
T Consensus 113 ~P~L~~~~l~~a~~~l~~~d-~-VigPa~d 140 (242)
T 3cgx_A 113 IPDYPCELVQKALNDLQHYD-A-AIGPAFD 140 (242)
T ss_dssp CTTCCHHHHHHHHHHTTTCS-E-EEEEBTT
T ss_pred CCCCCHHHHHHHHHHhccCC-e-EEEEcCC
Confidence 99999999999998776543 2 2345443
|
| >2i5k_A UTP--glucose-1-phosphate uridylyltransferase; LEFT-handed beta-helix, SGC domain; 3.10A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=97.99 E-value=5.4e-05 Score=64.64 Aligned_cols=118 Identities=14% Similarity=0.169 Sum_probs=71.4
Q ss_pred CCCCCCceeeeeC-CeehHHHHHHHHhcCC---CcC-eEEEEeC-CCchHHHHHHHHhc---CCcEEEe-----------
Q 028081 1 MGANMPKQYLPLL-GQPIALYSFYTFSRMV---EVK-EIVVVCD-PSYSDIFEETKEKI---NVDLKFS----------- 60 (214)
Q Consensus 1 m~~~~~K~l~~l~-gkpli~~~i~~~~~~~---~~~-~iiVv~~-~~~~~~~~~~~~~~---~~~~~~~----------- 60 (214)
||++.||.+++++ |||||+|++++++... ++. .++|+++ +.. +.+++.++++ |..+.++
T Consensus 106 mgs~~PK~l~~V~~gk~~Le~~i~~i~~l~~~~G~~Ip~vImts~~t~-e~t~~~~~~~~~fg~~i~~f~Q~~~P~i~~d 184 (488)
T 2i5k_A 106 MGCVGPKSVIEVREGNTFLDLSVRQIEYLNRQYDSDVPLLLMNSFNTD-KDTEHLIKKYSANRIRIRSFNQSRFPRVYKD 184 (488)
T ss_dssp GTCCSBSTTSCCBTTBCHHHHHHHHHHHHHHHHTCCCEEEEECCTTTH-HHHHHHHGGGCSSSCEEEEECCCCEECEETT
T ss_pred CCCCCCccccccCCCCcHHHHHHHHHHHhHHhcCCCccEEEEECCCCH-HHHHHHHHhccccCceEEEEEeCccceEccc
Confidence 7888999999999 9999999999987652 111 3556555 443 5577766653 3333322
Q ss_pred -----------------cCCccHHHHHHHH---Hhhc-ccCCCeEEEEcCCCCCCCHHHHHHHHHHHHhcC--CeEEeee
Q 028081 61 -----------------LPGKERQDSVYSG---LQEV-DFNSELVCIHDSARPLVLSKDVQKVLMDALRVG--AAVLGVP 117 (214)
Q Consensus 61 -----------------~~~~~~~~sv~~a---l~~~-~~~~~~vl~~~~d~P~v~~~~i~~~i~~~~~~~--~~i~~~~ 117 (214)
+.|.+..-....+ +..+ ....++++++++|. |+...++. ++..+...+ .++.+++
T Consensus 185 ~~~~l~~~~~~~~~~~~P~GtGga~~~L~~sg~l~~l~~~g~~~v~V~ngDn-L~~~~d~~-~L~~~~~~~a~~t~~v~~ 262 (488)
T 2i5k_A 185 SLLPVPTEYDSPLDAWYPPGHGDLFESLHVSGELDALIAQGREILFVSNGDN-LGATVDLK-ILNHMIETGAEYIMELTD 262 (488)
T ss_dssp TCCBSCSSSSSCTTSEECCCGGGHHHHHHHHTHHHHHHHTTCCEEEEECTTB-SSCCCCHH-HHHHHHHSCCSEEEEEEE
T ss_pred cceeeccCCCCCceeeecCCCchhhhhhhhcCcHHHHHhcCCCEEEEEeCCc-CCCcccHH-HHHHHHhcCCcEEEEEEE
Confidence 2233332222122 4444 22357999999999 88766665 445444433 3444555
Q ss_pred cccc
Q 028081 118 AKAT 121 (214)
Q Consensus 118 ~~~~ 121 (214)
..++
T Consensus 263 ~~~p 266 (488)
T 2i5k_A 263 KTRA 266 (488)
T ss_dssp CCGG
T ss_pred ecCC
Confidence 5443
|
| >1jv1_A Glcnac1P uridyltransferase isoform 1: AGX1; nucleotidyltransferase, alternative splicing; HET: UD1; 1.90A {Homo sapiens} SCOP: c.68.1.5 PDB: 1jv3_A* 1jvg_A* 1jvd_A* 1vm8_A* | Back alignment and structure |
|---|
Probab=97.09 E-value=0.0035 Score=53.70 Aligned_cols=51 Identities=10% Similarity=0.069 Sum_probs=35.8
Q ss_pred CCCCCCceeeee---CCeehHHHHHHHHhc----C----C---CcCeEEEEeCCCchHHHHHHHHh
Q 028081 1 MGANMPKQYLPL---LGQPIALYSFYTFSR----M----V---EVKEIVVVCDPSYSDIFEETKEK 52 (214)
Q Consensus 1 m~~~~~K~l~~l---~gkpli~~~i~~~~~----~----~---~~~~iiVv~~~~~~~~~~~~~~~ 52 (214)
||.+.||.++++ .|||+|+|.++.+++ + + .+..+++.+++.. +.+.+..++
T Consensus 116 Lg~~~PK~l~pv~~~~gk~~le~~~e~l~~lq~la~~~~G~~~~ip~vImtS~~t~-e~t~~~f~~ 180 (505)
T 1jv1_A 116 LGVAYPKGMYDVGLPSRKTLFQIQAERILKLQQVAEKYYGNKCIIPWYIMTSGRTM-ESTKEFFTK 180 (505)
T ss_dssp TSCSSCGGGCCCCCTTCCCHHHHHHHHHHHHHHHHHHHHSSCCCCCEEEEECTTTH-HHHHHHHHH
T ss_pred CCCCCCCccceeecCCCCcHHHHHHHHHHHHHHHHHHhcCCCccceEEEEecCCCH-HHHHHHHHh
Confidence 566789999999 899999999998765 1 1 2555555555543 455665543
|
| >3oc9_A UDP-N-acetylglucosamine pyrophosphorylase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 1.80A {Entamoeba histolytica} | Back alignment and structure |
|---|
Probab=96.33 E-value=0.051 Score=45.10 Aligned_cols=117 Identities=12% Similarity=0.144 Sum_probs=67.0
Q ss_pred CCCCCCceeeee---CCeehHHHHHHHHhc------------CCCcCeEEEEeCCCchHHHHHHHHh---cCC---cEE-
Q 028081 1 MGANMPKQYLPL---LGQPIALYSFYTFSR------------MVEVKEIVVVCDPSYSDIFEETKEK---INV---DLK- 58 (214)
Q Consensus 1 m~~~~~K~l~~l---~gkpli~~~i~~~~~------------~~~~~~iiVv~~~~~~~~~~~~~~~---~~~---~~~- 58 (214)
||.+.||.+.++ .|||++++.++.+++ ...+.-++..++... +.+.+..++ +|. .+.
T Consensus 49 LG~~~PK~~~~Vgl~~gks~lq~~~e~i~~lq~l~~~~~~~~~~~Ip~~IMtS~~t~-e~t~~~f~~~~~fGl~~~~i~~ 127 (405)
T 3oc9_A 49 LGFEHPKGMFVLPFEIPKSIFQMTSERLLRLQELASEYSHQKNVMIHWFLMTNEETI-EEINNYFKEHQYFGLSSEQIHC 127 (405)
T ss_dssp TTCCSBGGGCEECSSSCEEHHHHHHHHHHHHHHHHHHHHCCSCCCCEEEEEECTTTH-HHHHHHHHHTGGGGSCTTSEEE
T ss_pred ccCCCCCccccccCCCCCcHHHHHHHHHHHHHHHHhhhccccCCCCCEEEEeCCccH-HHHHHHHHhCcccCCCccceEE
Confidence 577889999999 999999999988853 123554455444443 556666654 232 121
Q ss_pred ------------------------EecCCccHH-HHHHH-H-Hhhcc-cCCCeEEEEcCCCCCC---CHHHHHHHHHHHH
Q 028081 59 ------------------------FSLPGKERQ-DSVYS-G-LQEVD-FNSELVCIHDSARPLV---LSKDVQKVLMDAL 107 (214)
Q Consensus 59 ------------------------~~~~~~~~~-~sv~~-a-l~~~~-~~~~~vl~~~~d~P~v---~~~~i~~~i~~~~ 107 (214)
+.+.|.+.. .++.. + ++.+. ...+++++.+.|.+|. ++..+..+++ .
T Consensus 128 f~Q~~~P~i~~dg~i~l~~~~~i~~~P~GhGgi~~aL~~sG~Ld~l~~~Gieyi~v~nvDN~L~~~~Dp~~lg~~~~--~ 205 (405)
T 3oc9_A 128 FPQGMLPVVDFNGKILYEKKDKPYMAPNGHGGLFKALKDNGILEFMNEKGIKYSVAHNVDNILCKDVDPNMIGYMDL--L 205 (405)
T ss_dssp EECCEEECBCTTSCBCEEETTEECEEECCGGGHHHHHHHTTHHHHHHHHTCCEEEEECTTBTTCCSSCHHHHHHHHH--T
T ss_pred EeeCceeEEecCCCeecCCCCccccccCCChHHHHHHHHCCcHHHHHhcCCEEEEEEeCCCcccccCCHHHHHHHHH--c
Confidence 333444332 22211 1 22232 2357999999999988 4555444433 1
Q ss_pred hcCCeEEeeeccc
Q 028081 108 RVGAAVLGVPAKA 120 (214)
Q Consensus 108 ~~~~~i~~~~~~~ 120 (214)
+.+.++-+++..+
T Consensus 206 ~~d~~~kvv~k~~ 218 (405)
T 3oc9_A 206 QSEICIKIVKKGF 218 (405)
T ss_dssp TCSEEEEEEECCS
T ss_pred CCCEEEEEEECCC
Confidence 2334445555443
|
| >2oeg_A UTP-glucose-1-phosphate uridylyltransferase 2, putative; rossmann-fold, beta-helix, pyrophosphorylase; HET: UPG; 2.30A {Leishmania major} PDB: 2oef_A* | Back alignment and structure |
|---|
Probab=95.83 E-value=0.037 Score=47.36 Aligned_cols=50 Identities=12% Similarity=0.112 Sum_probs=34.8
Q ss_pred CCCCCCceeeeeC-CeehHHHHHHHHhcCC-----CcCeEEEEeCCCchHHHHHHHH
Q 028081 1 MGANMPKQYLPLL-GQPIALYSFYTFSRMV-----EVKEIVVVCDPSYSDIFEETKE 51 (214)
Q Consensus 1 m~~~~~K~l~~l~-gkpli~~~i~~~~~~~-----~~~~iiVv~~~~~~~~~~~~~~ 51 (214)
||.+.||.+++++ |||+|++.++++++.. .+ .+++.+....-+.+.+.++
T Consensus 89 Lg~~~PK~llpV~~gk~fLe~~ie~l~~~~~~~g~~i-p~viMtS~~t~e~t~~~f~ 144 (505)
T 2oeg_A 89 MGLCDAKTLLEVKDGKTFLDFTALQVQYLRQHCSEHL-RFMLMDSFNTSASTKSFLK 144 (505)
T ss_dssp GTCCSCGGGSEEETTEEHHHHHHHHHHHHHHHTCTTC-EEEEEECHHHHHHHHHHHH
T ss_pred cCCCCCCcccccCCCCcHHHHHHHHHHHHHHhcCCCc-CEEEEeCCCCHHHHHHHHh
Confidence 4677899999999 9999999999998653 12 4555554332244555554
|
| >2yqc_A UDP-N-acetylglucosamine pyrophosphorylase; uridine-diphospho-N- acetylglucosamine, N-acetylglucosamine-1-phosphate, transferase; 1.90A {Candida albicans} PDB: 2yqh_A* 2yqj_A* 2yqs_A* | Back alignment and structure |
|---|
Probab=95.65 E-value=0.076 Score=45.25 Aligned_cols=51 Identities=10% Similarity=0.146 Sum_probs=36.7
Q ss_pred CCCCCCceeeeeC---CeehHHHHHHHHhcCC-------------CcCeEEEEeCCCchHHHHHHHHh
Q 028081 1 MGANMPKQYLPLL---GQPIALYSFYTFSRMV-------------EVKEIVVVCDPSYSDIFEETKEK 52 (214)
Q Consensus 1 m~~~~~K~l~~l~---gkpli~~~i~~~~~~~-------------~~~~iiVv~~~~~~~~~~~~~~~ 52 (214)
||.+.||.+++++ |||+|+|.++++.... .+..+++.+++.. +.+.+.+++
T Consensus 117 Lg~~~PK~l~~v~l~~gk~~l~~~~e~l~~~~~~~~~~~G~~~~~~ip~~ImtS~~t~-~~t~~~~~~ 183 (486)
T 2yqc_A 117 LGSSAPKGCFNIELPSQKSLFQIQAEKILKIEQLAQQYLKSTKKPIINWYIMTSGPTR-NATESFFIE 183 (486)
T ss_dssp GTCSSBGGGCBCCCTTCCBHHHHHHHHHHHHHHHHHHHHTCSSCCCCEEEEEECGGGH-HHHHHHHHH
T ss_pred CCCCCCCccceecCCCCCcHHHHHHHHHHHHHHHhhhhcCCCcCCccCEEEEECCCCH-HHHHHHHhh
Confidence 4667899999999 9999999999998641 2555555555543 446666543
|
| >1qg8_A Protein (spore coat polysaccharide biosynthesis P SPSA); glycosyltransferase, transferase; 1.50A {Bacillus subtilis} SCOP: c.68.1.1 PDB: 1h7q_A* 1h7l_A 1qgq_A* 1qgs_A* | Back alignment and structure |
|---|
Probab=95.29 E-value=0.22 Score=37.88 Aligned_cols=94 Identities=7% Similarity=0.033 Sum_probs=62.7
Q ss_pred eCCeehHHHHHHHHhcCCCc-CeEEEEeCCCchHHHHHHHHhc--CCcEEEecCC----------ccHHHHHHHHHhhcc
Q 028081 12 LLGQPIALYSFYTFSRMVEV-KEIVVVCDPSYSDIFEETKEKI--NVDLKFSLPG----------KERQDSVYSGLQEVD 78 (214)
Q Consensus 12 l~gkpli~~~i~~~~~~~~~-~~iiVv~~~~~~~~~~~~~~~~--~~~~~~~~~~----------~~~~~sv~~al~~~~ 78 (214)
.++...|..+++.+.+...- -+|+||-+... +...++++.+ ..++.++... .+...+.-.|++...
T Consensus 10 yn~~~~l~~~l~Sl~~q~~~~~eiivvDd~S~-d~t~~~~~~~~~~~~i~~i~~~~~~~~~~~~n~G~~~a~N~gi~~a~ 88 (255)
T 1qg8_A 10 YNKSDYVAKSISSILSQTFSDFELFIMDDNSN-EETLNVIRPFLNDNRVRFYQSDISGVKERTEKTRYAALINQAIEMAE 88 (255)
T ss_dssp SSCTTTHHHHHHHHHTCSCCCEEEEEEECSCC-HHHHHHHGGGGGSTTEEEEECCCCSHHHHHSSCHHHHHHHHHHHHCC
T ss_pred CCCHHHHHHHHHHHHhccCCceEEEEEECCCC-chHHHHHHHHhhcCCEEEEecccccccccccccCHHHHHHHHHHHcC
Confidence 46678899999999764322 26777655443 4455555554 3345555432 233455556777664
Q ss_pred cCCCeEEEEcCCCCCCCHHHHHHHHHHHHhc
Q 028081 79 FNSELVCIHDSARPLVLSKDVQKVLMDALRV 109 (214)
Q Consensus 79 ~~~~~vl~~~~d~P~v~~~~i~~~i~~~~~~ 109 (214)
.++++++|+|.- +.++.+..+++.+...
T Consensus 89 --g~~i~~lD~Dd~-~~~~~l~~~~~~~~~~ 116 (255)
T 1qg8_A 89 --GEYITYATDDNI-YMPDRLLKMVRELDTH 116 (255)
T ss_dssp --CSEEEEEETTEE-ECTTHHHHHHHHHHHC
T ss_pred --CCEEEEeCCCCc-cChHHHHHHHHHHHhC
Confidence 799999999984 5889999999988764
|
| >3bcv_A Putative glycosyltransferase protein; protein structure initiative II, PSI-II NYSGXRC, structural genomics; 2.35A {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=94.93 E-value=0.21 Score=37.46 Aligned_cols=95 Identities=17% Similarity=0.069 Sum_probs=60.5
Q ss_pred eCCeehHHHHHHHHhcCCCc-CeEEEEeCCCc---hHHHHHHHHhcCCcEEEecC-CccHHHHHHHHHhhcccCCCeEEE
Q 028081 12 LLGQPIALYSFYTFSRMVEV-KEIVVVCDPSY---SDIFEETKEKINVDLKFSLP-GKERQDSVYSGLQEVDFNSELVCI 86 (214)
Q Consensus 12 l~gkpli~~~i~~~~~~~~~-~~iiVv~~~~~---~~~~~~~~~~~~~~~~~~~~-~~~~~~sv~~al~~~~~~~~~vl~ 86 (214)
.+....|..+++.+.+...- -+|+||-+... .+.+++....+. .+.++.. ..+...+.-.|++... .+++++
T Consensus 14 yn~~~~l~~~l~Sl~~q~~~~~eiIvvDd~S~d~t~~~~~~~~~~~~-~i~~i~~~n~G~~~a~N~g~~~a~--g~~i~~ 90 (240)
T 3bcv_A 14 YNVEKYLDQCVQALLAQTLSDIEIILIDDESPDNCPKICDDYAAQYP-NIKVIHKKNAGLGMACNSGLDVAT--GEYVAF 90 (240)
T ss_dssp SSCTTTHHHHHHHHHTCSSSSEEEEEEECCCSSSHHHHHHHHHHHCS-SEEEEECCCCCHHHHHHHHHHHCC--SSEEEE
T ss_pred CCCHHHHHHHHHHHHhCcCCCeEEEEEECCCCcCHHHHHHHHHhhCC-CEEEEECCCCChHHHHHHHHHHcC--CCEEEE
Confidence 36778999999999764321 26777654322 122333333332 3544433 2233555556777765 689999
Q ss_pred EcCCCCCCCHHHHHHHHHHHHhcC
Q 028081 87 HDSARPLVLSKDVQKVLMDALRVG 110 (214)
Q Consensus 87 ~~~d~P~v~~~~i~~~i~~~~~~~ 110 (214)
+|+|. .+.++.++.+++.+...+
T Consensus 91 lD~Dd-~~~~~~l~~l~~~~~~~~ 113 (240)
T 3bcv_A 91 CDSDD-YVDSDMYMTMYNVAQKYT 113 (240)
T ss_dssp CCTTC-CCCTTHHHHHHHHHHHHT
T ss_pred ECCCC-cCCHHHHHHHHHHHHhcC
Confidence 99998 668999999999886633
|
| >3ckj_A Putative uncharacterized protein; mycobacteria, unknown function; HET: CIT; 1.80A {Mycobacterium paratuberculosis} PDB: 3ckn_A* 3cko_A* 3ckq_A* 3ckv_A* 3e26_A 3e25_A | Back alignment and structure |
|---|
Probab=94.63 E-value=0.26 Score=39.45 Aligned_cols=94 Identities=15% Similarity=0.015 Sum_probs=63.0
Q ss_pred eCCeehHHHHHHHHhcC--CCcCeEEEEeCCCchHHHHHHHHhcCCcEEE-------ecCCccHHHHHHHHHhhcccCCC
Q 028081 12 LLGQPIALYSFYTFSRM--VEVKEIVVVCDPSYSDIFEETKEKINVDLKF-------SLPGKERQDSVYSGLQEVDFNSE 82 (214)
Q Consensus 12 l~gkpli~~~i~~~~~~--~~~~~iiVv~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~sv~~al~~~~~~~~ 82 (214)
.+....|..+++.+.+. +...+|+||-+... +...++++.++..+.. .....+...+.-.|++... .+
T Consensus 57 yN~~~~l~~~l~sl~~q~~~~~~eiivVDdgS~-D~t~~~~~~~~~~~~~~~~~~~~~~~n~G~~~a~n~g~~~a~--gd 133 (329)
T 3ckj_A 57 LDEEDTIGSVIDSISPLVDGLVDELIVLDSGST-DDTEIRAVAAGARVVSREQALPEVPIRPGKGEALWRSLAASR--GD 133 (329)
T ss_dssp SSCTTTHHHHHHHHGGGBTTTBSEEEEEECSCC-SSHHHHHHHTTCEEEEHHHHCTTSCCCCSHHHHHHHHHHHCC--CS
T ss_pred CCCHHHHHHHHHHHHHhhCCCCcEEEEEeCCCC-chHHHHHHHhhhhhccceeeeccCCCCCCHHHHHHHHHHhCC--CC
Confidence 36778899999999764 22357888765432 3345556666544321 1222334566677887765 68
Q ss_pred eEEEEcCCCCCCCHHHHHHHHHHHHh
Q 028081 83 LVCIHDSARPLVLSKDVQKVLMDALR 108 (214)
Q Consensus 83 ~vl~~~~d~P~v~~~~i~~~i~~~~~ 108 (214)
+++++|+|.-.+.++.+..+++.+..
T Consensus 134 ~i~~lD~D~~~~~p~~l~~l~~~l~~ 159 (329)
T 3ckj_A 134 IVVFVDSDLINPHPMFVPWLVGPLLT 159 (329)
T ss_dssp EEEECCTTEESCCTTHHHHHHHHHHS
T ss_pred EEEEECCCCCCcChHHHHHHHHHHHh
Confidence 99999999965789999999987644
|
| >3f1y_A Mannosyl-3-phosphoglycerate synthase; GT-A type glycosyltransferase, GT-81, mannosyl-3-phosphoglyc synthase, GDP-mannose, transferas; 2.20A {Rubrobacter xylanophilus} PDB: 3kia_A* 3o3p_A* | Back alignment and structure |
|---|
Probab=93.77 E-value=0.43 Score=39.36 Aligned_cols=95 Identities=15% Similarity=0.011 Sum_probs=63.6
Q ss_pred eCCeehHHHHHHHHhc----CCCcCeEEEEeCCCchHHHHHHHHhcCCcEEEe-------cCCccHHHHHHHHHhhcccC
Q 028081 12 LLGQPIALYSFYTFSR----MVEVKEIVVVCDPSYSDIFEETKEKINVDLKFS-------LPGKERQDSVYSGLQEVDFN 80 (214)
Q Consensus 12 l~gkpli~~~i~~~~~----~~~~~~iiVv~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~sv~~al~~~~~~ 80 (214)
.+....|..+++.+.+ .+...+|+||-+... +...++++.++..+... ....+...++..|++...
T Consensus 103 yNe~~~l~~~l~sl~~~l~~~~~~~EIIVVDDgSt-D~T~~i~~~~~~~v~~~~~~~i~~~~n~G~g~A~n~G~~~A~-- 179 (387)
T 3f1y_A 103 RNVADTVGGIIDEIHALNERAPLIDQILVVDADSE-DGTAGVAASHGAEVYSENELMSGYGDAHGKGDAMWRALSVTR-- 179 (387)
T ss_dssp SSCTTTHHHHHHHHHHHHHHSCCCSEEEEEECSCS-SSHHHHHHHTTCEEEEGGGTTGGGCSCCSHHHHHHHHTTTCC--
T ss_pred CCCHHHHHHHHHHHHHHHhcCCCCeEEEEEcCcCC-ccHHHHHHHhCchhcccceeEecCCccCCHHHHHHHHHHhcC--
Confidence 3566778888888754 232468888765443 33456666666443211 122344666777887764
Q ss_pred CCeEEEEcCCCCCCCHHHHHHHHHHHHhc
Q 028081 81 SELVCIHDSARPLVLSKDVQKVLMDALRV 109 (214)
Q Consensus 81 ~~~vl~~~~d~P~v~~~~i~~~i~~~~~~ 109 (214)
.++++++|+|.=..+++.+.++++.+...
T Consensus 180 gd~i~~lDaD~~~~~p~~L~~l~~~l~~~ 208 (387)
T 3f1y_A 180 GDLVLYIDADTRDFRPQLAYGVLGPVLEV 208 (387)
T ss_dssp SSEEEECCTTCSSCCTHHHHTTHHHHHHS
T ss_pred CCEEEEEcCCCCcCCHHHHHHHHHHHHHC
Confidence 79999999999657999999999988653
|
| >1xhb_A Polypeptide N-acetylgalactosaminyltransferase 1; glycosyltransferase-A (GT-A); HET: NAG BMA; 2.50A {Mus musculus} SCOP: b.42.2.1 c.68.1.17 | Back alignment and structure |
|---|
Probab=92.58 E-value=0.52 Score=39.59 Aligned_cols=96 Identities=14% Similarity=0.040 Sum_probs=62.8
Q ss_pred CCe-ehHHHHHHHHhcCCCcC---eEEEEeCCCc----hHHHHHHHHhcCCcEEEecCC--ccHHHHHHHHHhhcccCCC
Q 028081 13 LGQ-PIALYSFYTFSRMVEVK---EIVVVCDPSY----SDIFEETKEKINVDLKFSLPG--KERQDSVYSGLQEVDFNSE 82 (214)
Q Consensus 13 ~gk-pli~~~i~~~~~~~~~~---~iiVv~~~~~----~~~~~~~~~~~~~~~~~~~~~--~~~~~sv~~al~~~~~~~~ 82 (214)
+.. ..|..+++++.+...-. +||||-+... .+.+++++..++..+.++... .+...+.-.|++... .+
T Consensus 39 N~~~~~l~~~l~Sl~~q~~~~~~~EIIvVDd~S~d~~t~~~l~~~~~~~~~~v~vi~~~~n~G~~~a~N~g~~~A~--gd 116 (472)
T 1xhb_A 39 NEAWSTLLRTVHSVINRSPRHMIEEIVLVDDASERDFLKRPLESYVKKLKVPVHVIRMEQRSGLIRARLKGAAVSR--GQ 116 (472)
T ss_dssp SCCHHHHHHHHHHHHHSSCGGGEEEEEEEECSCCCGGGTHHHHHHHHSSSSCEEEEECSSCCCHHHHHHHHHHHCC--SS
T ss_pred CCCHHHHHHHHHHHHhcCcHhHceEEEEEECCCCcHHHHHHHHHHHHHCCCcEEEEECCCCCChHHHHHHHHHhcc--CC
Confidence 455 68999999987643222 7888765332 123444444444346555432 334555666777765 78
Q ss_pred eEEEEcCCCCCCCHHHHHHHHHHHHhcCC
Q 028081 83 LVCIHDSARPLVLSKDVQKVLMDALRVGA 111 (214)
Q Consensus 83 ~vl~~~~d~P~v~~~~i~~~i~~~~~~~~ 111 (214)
+++++|+|. .++++.|..+++.+.....
T Consensus 117 ~i~flD~D~-~~~p~~L~~ll~~~~~~~~ 144 (472)
T 1xhb_A 117 VITFLDAHC-ECTAGWLEPLLARIKHDRR 144 (472)
T ss_dssp EEEEEESSE-EECTTCHHHHHHHHHHCTT
T ss_pred eEEEECCCe-EeCccHHHHHHHHHHhCCC
Confidence 999999998 4789999999998876543
|
| >4fix_A UDP-galactofuranosyl transferase GLFT2; CAZY GT-2 family, glycosyltrans carbohydrate binding, membrane; 2.45A {Mycobacterium tuberculosis} PDB: 4fiy_A* | Back alignment and structure |
|---|
Probab=91.97 E-value=0.49 Score=41.86 Aligned_cols=97 Identities=7% Similarity=0.001 Sum_probs=61.6
Q ss_pred eCCeehHHHHHHHHhcCC----CcCeEEEEeCCCc----hHHHHHHHHhcCCcEEEecCCc-cHHHHHHHHHhhccc--C
Q 028081 12 LLGQPIALYSFYTFSRMV----EVKEIVVVCDPSY----SDIFEETKEKINVDLKFSLPGK-ERQDSVYSGLQEVDF--N 80 (214)
Q Consensus 12 l~gkpli~~~i~~~~~~~----~~~~iiVv~~~~~----~~~~~~~~~~~~~~~~~~~~~~-~~~~sv~~al~~~~~--~ 80 (214)
.++...|..+++++.+.. ...+||||=+... ...+.+.++..+..+.++..+. +...+.-.|++.+.. +
T Consensus 189 YN~~~~L~~~L~SL~~qt~~~~~~~EIIVVDNgStD~s~~~~~~e~~~~~~~~I~vI~~~N~G~a~a~N~Gl~~A~g~~~ 268 (657)
T 4fix_A 189 FNRPADCVNALRELTADPLVDQVIGAVIVPDQGERKVRDHPDFPAAAARLGSRLSIHDQPNLGGSGGYSRVMYEALKNTD 268 (657)
T ss_dssp SSCHHHHHHHHHHHTTSHHHHTTEEEEEEEECSSSCGGGSTTHHHHHHHHGGGEEEEECCCCHHHHHHHHHHHHHHHHCC
T ss_pred cCCHHHHHHHHHHHHcCccccCCCCEEEEEECcCCCccchHHHHHHHHhcCCCEEEEECCCCCHHHHHHHHHHHHHhcCC
Confidence 478889999999987642 2457888754331 1123444443333566654432 223333445555421 4
Q ss_pred CCeEEEEcCCCCCCCHHHHHHHHHHHHhc
Q 028081 81 SELVCIHDSARPLVLSKDVQKVLMDALRV 109 (214)
Q Consensus 81 ~~~vl~~~~d~P~v~~~~i~~~i~~~~~~ 109 (214)
+|+++++|.|. .+.++.|.++++.+...
T Consensus 269 ~dyIlfLD~D~-~~~pd~L~~ll~~l~~~ 296 (657)
T 4fix_A 269 CQQILFMDDDI-RLEPDSILRVLAMHRFA 296 (657)
T ss_dssp CSEEEEECSSE-EECTHHHHHHHHHHHHB
T ss_pred CCEEEEECCCC-ccChhHHHHHHHHHHhC
Confidence 78999999999 67899999999988764
|
| >4hg6_A Cellulose synthase subunit A; membrane translocation, cellulose synthesis, UDP-GLC binding membrane, transferase; HET: BGC UDP LDA; 3.25A {Rhodobacter sphaeroides} | Back alignment and structure |
|---|
Probab=91.39 E-value=1.8 Score=39.22 Aligned_cols=98 Identities=11% Similarity=0.161 Sum_probs=61.2
Q ss_pred eeeeCCee--hHHHHHHHHhcCCCcC---eEEEEeCCCc------------------hHHHHHHHHhcCCcEEEecCC-c
Q 028081 9 YLPLLGQP--IALYSFYTFSRMVEVK---EIVVVCDPSY------------------SDIFEETKEKINVDLKFSLPG-K 64 (214)
Q Consensus 9 l~~l~gkp--li~~~i~~~~~~~~~~---~iiVv~~~~~------------------~~~~~~~~~~~~~~~~~~~~~-~ 64 (214)
+.+.-+.+ ++..+++++.+...-+ +|+|+.+... .+.+++.+++++..+...... .
T Consensus 145 iIPtyNe~~~lL~~~L~Sl~~q~yp~~~~eIiVVDDgStD~T~~~~d~~i~~~~~~~~~~l~~~~~~~~v~~i~~~~~~~ 224 (802)
T 4hg6_A 145 LVPSYNEPADMLSVTLAAAKNMIYPARLRTVVLCDDGGTDQRCMSPDPELAQKAQERRRELQQLCRELGVVYSTRERNEH 224 (802)
T ss_dssp EEECTTCCHHHHHHHHHHHHTSSCCTTCCEEEEESTTCHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHTCEEEECSSCCS
T ss_pred EEEECCCCHHHHHHHHHHHHhccCCCCcEEEEEEECCCCccccccCCHHHHHHHHhhhHHHHHHHHhcCcEEEEecCCCC
Confidence 44544443 5689999997654322 5777765431 012333444555433222222 2
Q ss_pred cHHHHHHHHHhhcccCCCeEEEEcCCCCCCCHHHHHHHHHHHHhc
Q 028081 65 ERQDSVYSGLQEVDFNSELVCIHDSARPLVLSKDVQKVLMDALRV 109 (214)
Q Consensus 65 ~~~~sv~~al~~~~~~~~~vl~~~~d~P~v~~~~i~~~i~~~~~~ 109 (214)
+...++-.|++... .|+++++|+|. .++++.++++++.+.+.
T Consensus 225 GKa~alN~gl~~a~--gd~Il~lDaD~-~~~pd~L~~lv~~~~~d 266 (802)
T 4hg6_A 225 AKAGNMSAALERLK--GELVVVFDADH-VPSRDFLARTVGYFVED 266 (802)
T ss_dssp HHHHHHHHHHHHCC--CSEEEECCTTE-EECTTHHHHHHHHHHHS
T ss_pred cchHHHHHHHHhcC--CCEEEEECCCC-CcChHHHHHHHHHHhcC
Confidence 34556677887765 79999999999 66899999999988543
|
| >2ffu_A Ppgalnact-2, polypeptide N-acetylgalactosaminyltransferase 2, protein-UDP; ppgalnact, mucin, glycosyltransferase; HET: UDP; 1.64A {Homo sapiens} PDB: 2ffv_A* | Back alignment and structure |
|---|
Probab=90.82 E-value=1.4 Score=37.32 Aligned_cols=99 Identities=13% Similarity=0.048 Sum_probs=62.1
Q ss_pred eeeeCC-ee-hHHHHHHHHhcCCCcC---eEEEEeCCCchHHHHHHHHhcCCcEEEecC--CccHHHHHHHHHhhcccCC
Q 028081 9 YLPLLG-QP-IALYSFYTFSRMVEVK---EIVVVCDPSYSDIFEETKEKINVDLKFSLP--GKERQDSVYSGLQEVDFNS 81 (214)
Q Consensus 9 l~~l~g-kp-li~~~i~~~~~~~~~~---~iiVv~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~sv~~al~~~~~~~ 81 (214)
+.+.-+ .. .|..+++.+.+...-. +||||-+...-+.+......+. .+.++.. ..+...+.-.|++... .
T Consensus 71 IIp~yN~~~~~L~~~l~Sl~~q~~~~~~~EIIvVDDgS~D~t~~~~~~~~~-~v~vi~~~~n~G~~~A~N~G~~~A~--g 147 (501)
T 2ffu_A 71 VITFHNEARSALLRTVVSVLKKSPPHLIKEIILVDDYSNDPEDGALLGKIE-KVRVLRNDRREGLMRSRVRGADAAQ--A 147 (501)
T ss_dssp EEEESSCCHHHHHHHHHHHHHHSCGGGEEEEEEEECSCSCTHHHHGGGGBT-TEEEEECSSCCHHHHHHHHHHHHCC--S
T ss_pred EEEeCcCcHHHHHHHHHHHHhhCchhhceeEEEEECCCCchHHHHHHhcCC-CEEEEECCCCcCHHHHHHHHHHhcC--C
Confidence 344434 34 8899999887543222 7888755432122333333333 4555542 2234555666777765 7
Q ss_pred CeEEEEcCCCCCCCHHHHHHHHHHHHhcCC
Q 028081 82 ELVCIHDSARPLVLSKDVQKVLMDALRVGA 111 (214)
Q Consensus 82 ~~vl~~~~d~P~v~~~~i~~~i~~~~~~~~ 111 (214)
++++++|+|. .++++.|..+++.+.....
T Consensus 148 d~i~flD~D~-~~~p~~L~~ll~~~~~~~~ 176 (501)
T 2ffu_A 148 KVLTFLDSHC-ECNEHWLEPLLERVAEDRT 176 (501)
T ss_dssp SEEEECCSSE-EECTTCHHHHHHHHHHCTT
T ss_pred CEEEEECCCc-ccCccHHHHHHHHHHhCCC
Confidence 8999999999 4689999999998876544
|
| >2bo4_A Mannosylglycerate synthase; catalysis, glycosyltransferase, mannose, transferase, stereoselectivity; HET: FLC; 1.95A {Rhodothermus marinus} SCOP: c.68.1.18 PDB: 2bo6_A 2bo7_A* 2bo8_A* 2xw2_A 2y4j_A 2xw3_A* 2xw4_A* 2xw5_A* 2y4k_A* 2y4l_A* 2y4m_A* | Back alignment and structure |
|---|
Probab=87.72 E-value=9.3 Score=31.49 Aligned_cols=43 Identities=16% Similarity=0.044 Sum_probs=33.7
Q ss_pred ccHHHHHHHHH----hhcccCCCeEEEEcCCCCCCCHHHHHHHHHHHHh
Q 028081 64 KERQDSVYSGL----QEVDFNSELVCIHDSARPLVLSKDVQKVLMDALR 108 (214)
Q Consensus 64 ~~~~~sv~~al----~~~~~~~~~vl~~~~d~P~v~~~~i~~~i~~~~~ 108 (214)
.+...++..|+ ... ..|+++++|||.=-.+|+.|.++++...+
T Consensus 74 ~GkG~Al~~G~~~Al~~a--~gd~vv~mDADlq~~~P~~i~~Ll~~l~~ 120 (397)
T 2bo4_A 74 PGKGDGMNTALRYFLEET--QWERIHFYDADITSFGPDWITKAEEAADF 120 (397)
T ss_dssp SSHHHHHHHHHHHHHHHC--CCSEEEECCTTCSSCCHHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHHHHHhC--CCCEEEEEcCCCCCCCHHHHHHHHHHHHc
Confidence 45677888888 544 37899999999744689999999987754
|
| >2d7i_A Polypeptide N-acetylgalactosaminyltransferase 10; beta trefoil, rossmann fold; HET: NAG NGA UDP; 2.50A {Homo sapiens} PDB: 2d7r_A* | Back alignment and structure |
|---|
Probab=87.18 E-value=1.7 Score=37.59 Aligned_cols=98 Identities=14% Similarity=0.070 Sum_probs=61.9
Q ss_pred eeeCC-e-ehHHHHHHHHhcCCCcC---eEEEEeCCCc----hHHHHHHHHhcCCcEEEecC--CccHHHHHHHHHhhcc
Q 028081 10 LPLLG-Q-PIALYSFYTFSRMVEVK---EIVVVCDPSY----SDIFEETKEKINVDLKFSLP--GKERQDSVYSGLQEVD 78 (214)
Q Consensus 10 ~~l~g-k-pli~~~i~~~~~~~~~~---~iiVv~~~~~----~~~~~~~~~~~~~~~~~~~~--~~~~~~sv~~al~~~~ 78 (214)
.+.-+ . ..|..+++.+.+...-. +||||-+... .+.+++++..+. .+.++.. ..+...+.-.|++...
T Consensus 118 Ip~yNe~~~~L~~~L~Sll~qt~~~~~~EIIVVDDgS~D~tl~~~l~~~~~~~~-~v~vi~~~~n~G~~~A~N~G~~~A~ 196 (570)
T 2d7i_A 118 IPFHNEGWSSLLRTVHSVLNRSPPELVAEIVLVDDFSDREHLKKPLEDYMALFP-SVRILRTKKREGLIRTRMLGASVAT 196 (570)
T ss_dssp EEESSCCHHHHHHHHHHHHHHSCGGGEEEEEEEECSCCCGGGTHHHHHHHTTST-TEEEEECSSCCCHHHHHHHHHHHCC
T ss_pred EEECCCCHHHHHHHHHHHHhcCCccCcEEEEEEECCCCcHHHHHHHHHHHHhCC-eEEEEECCCCCCHHHHHHHHHHhcC
Confidence 44444 4 58889999887543222 7888755332 123444444432 4555543 2334566666777765
Q ss_pred cCCCeEEEEcCCCCCCCHHHHHHHHHHHHhcCC
Q 028081 79 FNSELVCIHDSARPLVLSKDVQKVLMDALRVGA 111 (214)
Q Consensus 79 ~~~~~vl~~~~d~P~v~~~~i~~~i~~~~~~~~ 111 (214)
.++++++|+|.=+ +++.|..+++.+.....
T Consensus 197 --gd~i~fLD~D~~~-~p~~L~~ll~~l~~~~~ 226 (570)
T 2d7i_A 197 --GDVITFLDSHCEA-NVNWLPPLLDRIARNRK 226 (570)
T ss_dssp --SSEEEECCSSEEE-CTTCSHHHHHHHHHCTT
T ss_pred --CCEEEEEcCCccc-cccHHHHHHHHHHhCCC
Confidence 6899999999944 88999999988866443
|
| >2z86_A Chondroitin synthase; GT-A, glycosyltransferase A, fold; HET: UGA UDP; 2.40A {Escherichia coli} PDB: 2z87_A* | Back alignment and structure |
|---|
Probab=86.78 E-value=3 Score=36.24 Aligned_cols=95 Identities=17% Similarity=0.074 Sum_probs=60.8
Q ss_pred CCeehHHHHHHHHhcCC--CcCeEEEEeCCCchHHHHHHHHhcC--CcEEEec--C-CccHHHHHHHHHhhcccCCCeEE
Q 028081 13 LGQPIALYSFYTFSRMV--EVKEIVVVCDPSYSDIFEETKEKIN--VDLKFSL--P-GKERQDSVYSGLQEVDFNSELVC 85 (214)
Q Consensus 13 ~gkpli~~~i~~~~~~~--~~~~iiVv~~~~~~~~~~~~~~~~~--~~~~~~~--~-~~~~~~sv~~al~~~~~~~~~vl 85 (214)
+....|..+++++.... .--+|+|+-+... +...+.++.+. ..+.++. + +.+...+.-.|++... .++++
T Consensus 103 n~~~~l~~~l~sl~~q~~~~~~eiivvDd~s~-d~t~~~~~~~~~~~~i~~i~~~~~~~g~~~a~N~g~~~a~--g~~v~ 179 (625)
T 2z86_A 103 NRAKILAITLACLCNQKTIYDYEVIVADDGSK-ENIEEIVREFESLLNIKYVRQKDYGYQLCAVRNLGLRAAK--YNYVA 179 (625)
T ss_dssp SCHHHHHHHHHHHHTCCCSSCEEEEEEEESCS-SCHHHHHHTTTTTSCEEEEEECCCSCCHHHHHHHHHHHCC--SSEEE
T ss_pred CcHHHHHHHHHHHHhhccCCCeEEEEEeCCCc-hhHHHHHHHhhhcCCeEEEEeCCCCcchhHHHHHHHHhCC--cCEEE
Confidence 56678999999997652 1246777755332 22445555542 1343332 2 2234555666777764 78999
Q ss_pred EEcCCCCCCCHHHHHHHHHHHHhcCC
Q 028081 86 IHDSARPLVLSKDVQKVLMDALRVGA 111 (214)
Q Consensus 86 ~~~~d~P~v~~~~i~~~i~~~~~~~~ 111 (214)
++|+|.=+ +++.+..+++.+.....
T Consensus 180 ~lD~D~~~-~~~~l~~~~~~~~~~~~ 204 (625)
T 2z86_A 180 ILDCDMAP-NPLWVQSYMELLAVDDN 204 (625)
T ss_dssp EECTTEEE-CTTHHHHHHHHHHHCTT
T ss_pred EECCCCCC-CHHHHHHHHHHHhcCCc
Confidence 99999954 89999999998876443
|
| >2z86_A Chondroitin synthase; GT-A, glycosyltransferase A, fold; HET: UGA UDP; 2.40A {Escherichia coli} PDB: 2z87_A* | Back alignment and structure |
|---|
Probab=85.21 E-value=5 Score=34.79 Aligned_cols=94 Identities=12% Similarity=0.040 Sum_probs=58.9
Q ss_pred eCCeehHHHHHHHHhcCCCcC-eEEEEeCCCc---hHHHHHHHHhcCCcEEEecC-CccHHHHHHHHHhhcccCCCeEEE
Q 028081 12 LLGQPIALYSFYTFSRMVEVK-EIVVVCDPSY---SDIFEETKEKINVDLKFSLP-GKERQDSVYSGLQEVDFNSELVCI 86 (214)
Q Consensus 12 l~gkpli~~~i~~~~~~~~~~-~iiVv~~~~~---~~~~~~~~~~~~~~~~~~~~-~~~~~~sv~~al~~~~~~~~~vl~ 86 (214)
.++...|..+++.+.+....+ +|+|+-+... .+.+++....+. .+.++.. ..+...+.-.|++... .+++++
T Consensus 384 yn~~~~l~~~l~s~~~q~~~~~eiivvdd~S~d~t~~~~~~~~~~~~-~i~~~~~~n~G~~~a~n~g~~~a~--g~~i~~ 460 (625)
T 2z86_A 384 YNCSKYIVRCVESALNQTITDLEVCICDDGSTDDTLRILQEHYANHP-RVRFISQKNKGIGSASNTAVRLCR--GFYIGQ 460 (625)
T ss_dssp SSCTTTHHHHHHHHHSSSCCSEEEEEEEESCSSSHHHHHHHHHTTCT-TEEEEEECCCCHHHHHHHHHHHCC--SSEEEE
T ss_pred CCCHHHHHHHHHHHHhCcCCCeEEEEEECcCChhHHHHHHHHHhhCC-cEEEEeCCCCCHHHHHHHHHHhcC--CCEEEE
Confidence 477889999999997643222 6666644322 122333222222 3444322 2234555666777664 689999
Q ss_pred EcCCCCCCCHHHHHHHHHHHHhc
Q 028081 87 HDSARPLVLSKDVQKVLMDALRV 109 (214)
Q Consensus 87 ~~~d~P~v~~~~i~~~i~~~~~~ 109 (214)
+|+|. .+.++.+..+++.+...
T Consensus 461 ld~D~-~~~~~~l~~~~~~~~~~ 482 (625)
T 2z86_A 461 LDSDD-FLEPDAVELCLDEFRKD 482 (625)
T ss_dssp CCTTC-EECTTHHHHHHHHHHHC
T ss_pred ECCCc-ccChhHHHHHHHHHHhC
Confidence 99998 56999999999887653
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 214 | ||||
| d1w77a1 | 226 | c.68.1.13 (A:75-300) 4-diphosphocytidyl-2C-methyl- | 4e-40 | |
| d1vgwa_ | 226 | c.68.1.13 (A:) 4-diphosphocytidyl-2C-methyl-D-eryt | 3e-32 | |
| d1i52a_ | 225 | c.68.1.13 (A:) 4-diphosphocytidyl-2C-methyl-D-eryt | 3e-32 | |
| d1vpaa_ | 221 | c.68.1.13 (A:) 4-diphosphocytidyl-2C-methyl-D-eryt | 2e-28 | |
| d1w55a1 | 205 | c.68.1.13 (A:3-207) IspD/IspF bifunctional enzyme, | 3e-24 | |
| d2dpwa1 | 231 | c.68.1.19 (A:1-231) Uncharacterized protein TTHA01 | 7e-05 | |
| d2oi6a2 | 248 | c.68.1.5 (A:4-251) N-acetylglucosamine 1-phosphate | 5e-04 | |
| d1lvwa_ | 295 | c.68.1.6 (A:) RmlA (RfbA) {Archaeon Methanobacteri | 7e-04 | |
| d1g97a2 | 250 | c.68.1.5 (A:2-251) N-acetylglucosamine 1-phosphate | 0.001 | |
| d1mc3a_ | 291 | c.68.1.6 (A:) RffH {Escherichia coli [TaxId: 562]} | 0.004 |
| >d1w77a1 c.68.1.13 (A:75-300) 4-diphosphocytidyl-2C-methyl-D-erythritol (CDP-me) synthase (IspD, YgbP) {Thale cress (Arabidopsis thaliana), chloroplast [TaxId: 3702]} Length = 226 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-diphospho-sugar transferases superfamily: Nucleotide-diphospho-sugar transferases family: Cytidylytransferase domain: 4-diphosphocytidyl-2C-methyl-D-erythritol (CDP-me) synthase (IspD, YgbP) species: Thale cress (Arabidopsis thaliana), chloroplast [TaxId: 3702]
Score = 135 bits (339), Expect = 4e-40
Identities = 169/208 (81%), Positives = 191/208 (91%)
Query: 1 MGANMPKQYLPLLGQPIALYSFYTFSRMVEVKEIVVVCDPSYSDIFEETKEKINVDLKFS 60
M +MPKQY+PLLGQPIALYSF+TFSRM EVKEIVVVCDP + DIFEE +E I+VDL+F+
Sbjct: 18 MKMSMPKQYIPLLGQPIALYSFFTFSRMPEVKEIVVVCDPFFRDIFEEYEESIDVDLRFA 77
Query: 61 LPGKERQDSVYSGLQEVDFNSELVCIHDSARPLVLSKDVQKVLMDALRVGAAVLGVPAKA 120
+PGKERQDSVYSGLQE+D NSELVCIHDSARPLV ++DV+KVL D VGAAVLGVPAKA
Sbjct: 78 IPGKERQDSVYSGLQEIDVNSELVCIHDSARPLVNTEDVEKVLKDGSAVGAAVLGVPAKA 137
Query: 121 TIKEANSESFVVRTLDRKTLWEMQTPQVIKPDLLKKGFELVNREGLEVTDDVSIVEHLKH 180
TIKE NS+S VV+TLDRKTLWEMQTPQVIKP+LLKKGFELV EGLEVTDDVSIVE+LKH
Sbjct: 138 TIKEVNSDSLVVKTLDRKTLWEMQTPQVIKPELLKKGFELVKSEGLEVTDDVSIVEYLKH 197
Query: 181 PVYITEGSYTNIKVTTPDDLLIAERILN 208
PVY+++GSYTNIKVTTPDDLL+AERIL+
Sbjct: 198 PVYVSQGSYTNIKVTTPDDLLLAERILS 225
|
| >d1vgwa_ c.68.1.13 (A:) 4-diphosphocytidyl-2C-methyl-D-erythritol (CDP-me) synthase (IspD, YgbP) {Neisseria gonorrhoeae [TaxId: 485]} Length = 226 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-diphospho-sugar transferases superfamily: Nucleotide-diphospho-sugar transferases family: Cytidylytransferase domain: 4-diphosphocytidyl-2C-methyl-D-erythritol (CDP-me) synthase (IspD, YgbP) species: Neisseria gonorrhoeae [TaxId: 485]
Score = 114 bits (285), Expect = 3e-32
Identities = 51/213 (23%), Positives = 95/213 (44%), Gaps = 8/213 (3%)
Query: 1 MGANMPKQYLPLLGQPIALYSFYTFSRMVEVKEIVVVCDPSYSDIFEETKEKINVDLKFS 60
GA+ PKQY+ + + + + F R V VVV P ++ + +
Sbjct: 17 FGADKPKQYVEIGSKTVLEHVLGIFERHEAVDLTVVVVSP-EDTFADKVQTAFPQVRVWK 75
Query: 61 LPGKERQDSVYSGLQEV-----DFNSELVCIHDSARPLVLSKDVQKVLMDALRVGAAVLG 115
G+ R ++V +G+ ++ ++ + +HD+AR + S+ + +++ A +
Sbjct: 76 NGGQTRAETVRNGVAKLLETGLAAETDNILVHDAARCCLPSEALARLIEQAGNAAEGGIL 135
Query: 116 VPAKATIKEANSESFVVRTLDRKTLWEMQTPQVIKPDLLKKGFELVNREGLEVTDDVSIV 175
A + + T+DR LW+ QTPQ+ + LL + N G +TD+ S V
Sbjct: 136 AVPVADTLKRAESGQISATVDRSGLWQAQTPQLFQAGLLHRALAAENLGG--ITDEASAV 193
Query: 176 EHLKHPVYITEGSYTNIKVTTPDDLLIAERILN 208
E L + +G N+K+T P D I +L+
Sbjct: 194 EKLGVRPLLIQGDARNLKLTQPQDAYIVRLLLD 226
|
| >d1i52a_ c.68.1.13 (A:) 4-diphosphocytidyl-2C-methyl-D-erythritol (CDP-me) synthase (IspD, YgbP) {Escherichia coli [TaxId: 562]} Length = 225 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-diphospho-sugar transferases superfamily: Nucleotide-diphospho-sugar transferases family: Cytidylytransferase domain: 4-diphosphocytidyl-2C-methyl-D-erythritol (CDP-me) synthase (IspD, YgbP) species: Escherichia coli [TaxId: 562]
Score = 114 bits (285), Expect = 3e-32
Identities = 57/209 (27%), Positives = 87/209 (41%), Gaps = 2/209 (0%)
Query: 1 MGANMPKQYLPLLGQPIALYSFYTFSRMVEVKEIVVVCDPSYSDIFEETKEKINVDLKFS 60
M PKQYL + Q I +S + VK +V+ P S + + +
Sbjct: 17 MQTECPKQYLSIGNQTILEHSVHALLAHPRVKRVVIAISPGDSRFAQLPL-ANHPQITVV 75
Query: 61 LPGKERQDSVYSGLQEVDFNSELVCIHDSARPLVLSKDVQKVLMDALRVGAAVLGVPAKA 120
G ER DSV +GL+ ++ + L + + + +L P +
Sbjct: 76 DGGDERADSVLAGLKAAGDAQWVLVHDAARPCLHQDDLARLLALSETSRTGGILAAPVRD 135
Query: 121 TIKEANSE-SFVVRTLDRKTLWEMQTPQVIKPDLLKKGFELVNREGLEVTDDVSIVEHLK 179
T+K A + + T+DR LW TPQ +LL EG +TD+ S +E+
Sbjct: 136 TMKRAEPGKNAIAHTVDRNGLWHALTPQFFPRELLHDCLTRALNEGATITDEASALEYCG 195
Query: 180 HPVYITEGSYTNIKVTTPDDLLIAERILN 208
+ EG NIKVT P+DL +AE L
Sbjct: 196 FHPQLVEGRADNIKVTRPEDLALAEFYLT 224
|
| >d1vpaa_ c.68.1.13 (A:) 4-diphosphocytidyl-2C-methyl-D-erythritol (CDP-me) synthase (IspD, YgbP) {Thermotoga maritima [TaxId: 2336]} Length = 221 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-diphospho-sugar transferases superfamily: Nucleotide-diphospho-sugar transferases family: Cytidylytransferase domain: 4-diphosphocytidyl-2C-methyl-D-erythritol (CDP-me) synthase (IspD, YgbP) species: Thermotoga maritima [TaxId: 2336]
Score = 104 bits (260), Expect = 2e-28
Identities = 57/207 (27%), Positives = 90/207 (43%), Gaps = 6/207 (2%)
Query: 1 MGANMPKQYLPLLGQPIALYSFYTFSRMVEVKEIVVVCDPSYSDIFEETKEKINVDLKFS 60
M N+PKQ+L + G+ + Y TF + + +V+V + ++ E+ V
Sbjct: 17 MSENVPKQFLEIEGRMLFEYPLSTFLKSEAIDGVVIVTRREWFEVVEKRVFHEKVLGIVE 76
Query: 61 LPGKERQDSVYSGLQEVDFNSELVCIHDSARPLVLSKDVQKVLMDALRVGAAVLGVPAKA 120
Q + F+ V +HDSARP + K V +VL A GAA L +
Sbjct: 77 GGDTRSQSVRSALEFLEKFSPSYVLVHDSARPFLRKKHVSEVLRRARETGAATLALKNSD 136
Query: 121 TIKEANSESFVVRTLDRKTLWEMQTPQVIKPDLLKKGFELVNREGLEVTDDVSIVEHLKH 180
+ E+ + + RK ++ + TPQ ++LKK E G E DD V+ L
Sbjct: 137 ALV--RVENDRIEYIPRKGVYRILTPQAFSYEILKKAHE----NGGEWADDTEPVQKLGV 190
Query: 181 PVYITEGSYTNIKVTTPDDLLIAERIL 207
+ + EG KVT +DL +A I
Sbjct: 191 KIALVEGDPLCFKVTFKEDLELARIIA 217
|
| >d1w55a1 c.68.1.13 (A:3-207) IspD/IspF bifunctional enzyme, CDP-me synthase domain {Campylobacter jejuni [TaxId: 197]} Length = 205 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-diphospho-sugar transferases superfamily: Nucleotide-diphospho-sugar transferases family: Cytidylytransferase domain: IspD/IspF bifunctional enzyme, CDP-me synthase domain species: Campylobacter jejuni [TaxId: 197]
Score = 93.1 bits (230), Expect = 3e-24
Identities = 47/204 (23%), Positives = 78/204 (38%), Gaps = 18/204 (8%)
Query: 1 MGANMPKQYLPLLGQPIALYSFYTFSRMVEVKEIVVVCDPSYSDIFEETKEKINVDLKFS 60
+ KQ+L L P+ LY+ S K+IVV +
Sbjct: 15 FNTKVKKQFLRLGNDPLWLYATKNLSSFYPFKKIVVTSSNITYMKKFTKNYEFIE----- 69
Query: 61 LPGKERQDSVYSGLQEVDFNSELVCIHDSARPLVLSKDVQKVLMDALRVGAAVLGVPAKA 120
G R +S+ L+ +D V + D AR LV +++ + + +
Sbjct: 70 -GGDTRAESLKKALELIDSEF--VMVSDVARVLVSKNLFDRLIENLDKADCITPALKVAD 126
Query: 121 TIKEANSESFVVRTLDRKTLWEMQTPQVIKPDLLKKGFELVNREGLEVTDDVSIVEHLKH 180
T F L R+ + +QTPQ+ K LLKK + + LE TDD + + +
Sbjct: 127 TTL------FDNEALQREKIKLIQTPQISKTKLLKKALD----QNLEFTDDSTAIAAMGG 176
Query: 181 PVYITEGSYTNIKVTTPDDLLIAE 204
++ EG K+T +DL +
Sbjct: 177 KIWFVEGEENARKLTFKEDLKKLD 200
|
| >d2dpwa1 c.68.1.19 (A:1-231) Uncharacterized protein TTHA0179 {Thermus thermophilus [TaxId: 274]} Length = 231 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-diphospho-sugar transferases superfamily: Nucleotide-diphospho-sugar transferases family: TTHA0179-like domain: Uncharacterized protein TTHA0179 species: Thermus thermophilus [TaxId: 274]
Score = 40.2 bits (93), Expect = 7e-05
Identities = 27/223 (12%), Positives = 52/223 (23%), Gaps = 41/223 (18%)
Query: 6 PKQYLPLLGQPIALYSFYTFSRMVEVKEIVVVCDPSYSDIFEETKEKINVDLKFSLPGKE 65
K +P G+P+ + V ++
Sbjct: 23 SKALVPYRGRPMVEWVLEALYAAGLSPVYVGENPGLVPAPALTLPDRGG----------- 71
Query: 66 RQDSVYSGLQEVDFNSELVCIHDSARPLVLSKDVQKVLMDALRVGAAVLGVPAKATIKEA 125
+++ L+ V+ V + P + + V+ VL A VP +A
Sbjct: 72 LLENLEQALEHVE---GRVLVATGDIPHLTEEAVRFVLDKAPEAALVYPIVPKEAVEARF 128
Query: 126 NSESFVVRTL-----DRKTLWEMQTPQVIKPDLLKKG----------------------F 158
L L + K L +
Sbjct: 129 PRTKRTYARLREGTFTGGNLLLLDKSLFRKALPLARRVVALRKRPLALARLVGWDVLLKL 188
Query: 159 ELVNREGLEVTDDVSIVEHLKHPVYITEGSYTNIKVTTPDDLL 201
L EV + ++ +T + V +DL+
Sbjct: 189 LLGRLSLAEVEARAQRILGVEARALVTPYPEVGVDVDREEDLV 231
|
| >d2oi6a2 c.68.1.5 (A:4-251) N-acetylglucosamine 1-phosphate uridyltransferase GlmU, N-terminal domain {Escherichia coli [TaxId: 562]} Length = 248 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-diphospho-sugar transferases superfamily: Nucleotide-diphospho-sugar transferases family: UDP-glucose pyrophosphorylase domain: N-acetylglucosamine 1-phosphate uridyltransferase GlmU, N-terminal domain species: Escherichia coli [TaxId: 562]
Score = 37.8 bits (86), Expect = 5e-04
Identities = 19/224 (8%), Positives = 58/224 (25%), Gaps = 18/224 (8%)
Query: 1 MGANMPKQYLPLLGQPIALYSFYTFSRMVEVKEIVVVCDPSYSDIFEETKEKINVDLKFS 60
M +++PK L G+ + + + + + +V + + K+ + +
Sbjct: 16 MYSDLPKVLHTLAGKAMVQHVIDAANE-LGAAHVHLVYGHGGDLLKQALKDDNLNWVLQA 74
Query: 61 LPGKERQDSVYSGLQEVDFNSELVCIHDSARPL--VLSKDVQKVLMDALRVGAAVLGVPA 118
++ + +++ ++ + + ++ V
Sbjct: 75 EQ-LGTGHAMQQAAPFFADDEDILMLYGDVPLISVETLQRLRDAKPQGGIGLLTVKLDDP 133
Query: 119 KATIKEANSESFVVRTLDRKTLWEMQTPQV------------IKPDLLKKGFELVNREGL 166
+ V ++ K + Q L K +
Sbjct: 134 TGYGRITRENGKVTGIVEHKDATDEQRQIQEINTGILIANGADMKRWLAKLTNNNAQGEY 193
Query: 167 EVTDDVSIVEHLKHPV--YITEGSYTNIKVTTPDDLLIAERILN 208
+TD +++ + + V L ER+
Sbjct: 194 YITDIIALAYQEGREIVAVHPQRLSEVEGVNNRLQLSRLERVYQ 237
|
| >d1lvwa_ c.68.1.6 (A:) RmlA (RfbA) {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} Length = 295 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-diphospho-sugar transferases superfamily: Nucleotide-diphospho-sugar transferases family: glucose-1-phosphate thymidylyltransferase domain: RmlA (RfbA) species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]
Score = 37.2 bits (86), Expect = 7e-04
Identities = 12/68 (17%), Positives = 32/68 (47%), Gaps = 8/68 (11%)
Query: 4 NMPKQYLPLLGQPIALYSFYTFSRMVE--VKEIVVVCDPSYSDIFEE---TKEKINVDLK 58
+ KQ LP+ +P+ +Y Y S ++ +++I+++ P ++ + + V
Sbjct: 23 AVSKQLLPIYDKPM-IY--YPLSVLMLAGIRDILIISTPRDLPLYRDLLGDGSQFGVRFS 79
Query: 59 FSLPGKER 66
+ + + R
Sbjct: 80 YRVQEEPR 87
|
| >d1g97a2 c.68.1.5 (A:2-251) N-acetylglucosamine 1-phosphate uridyltransferase GlmU, N-terminal domain {Streptococcus pneumoniae [TaxId: 1313]} Length = 250 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-diphospho-sugar transferases superfamily: Nucleotide-diphospho-sugar transferases family: UDP-glucose pyrophosphorylase domain: N-acetylglucosamine 1-phosphate uridyltransferase GlmU, N-terminal domain species: Streptococcus pneumoniae [TaxId: 1313]
Score = 36.2 bits (82), Expect = 0.001
Identities = 26/228 (11%), Positives = 66/228 (28%), Gaps = 23/228 (10%)
Query: 1 MGANMPKQYLPLLGQPIALYSFYTFSRMVEVKEIVVVCDPSYSDIFEETKEKINVDLKFS 60
M +++PK + G + + F + ++ ++ V V + E + +
Sbjct: 15 MKSDLPKVLHKVAGISMLEHVFRSVGA-IQPEKTVTVVGHKAELVEEVLAGQTEFVTQS- 72
Query: 61 LPGKERQDSVYSGLQEVDFNSELVCIHDSARPLVLSKDVQKVLMDALRVGAAVLGVPAKA 120
+V ++ S + PL+ + ++ ++ + + A+
Sbjct: 73 -EQLGTGHAVMMTEPILEGLSGHTLVIAGDTPLITGESLKNLIDFHINHKNVATILTAET 131
Query: 121 TIKEANS--ESFVVRTLDRKTLWEMQTPQVIKPDLLKKGFELVNRE-------------- 164
+ R + T + + G + + E
Sbjct: 132 DNPFGYGRIVRNDNAEVLRIVEQKDATDFEKQIKEINTGTYVFDNERLFEALKNINTNNA 191
Query: 165 --GLEVTDDVSIVEHLKHPV--YITEGSYTNIKVTTPDDLLIAERILN 208
+TD + I V Y + ++ V L AE ++
Sbjct: 192 QGEYYITDVIGIFRETGEKVGAYTLKDFDESLGVNDRVALATAESVMR 239
|
| >d1mc3a_ c.68.1.6 (A:) RffH {Escherichia coli [TaxId: 562]} Length = 291 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-diphospho-sugar transferases superfamily: Nucleotide-diphospho-sugar transferases family: glucose-1-phosphate thymidylyltransferase domain: RffH species: Escherichia coli [TaxId: 562]
Score = 35.1 bits (81), Expect = 0.004
Identities = 11/60 (18%), Positives = 27/60 (45%), Gaps = 4/60 (6%)
Query: 4 NMPKQYLPLLGQPIALYSFYTFSRMVEVKEIVVVCDPSYSDIFEE---TKEKINVDLKFS 60
+ KQ LP+ +P+ Y + ++EI+++ P F+ + + L+++
Sbjct: 21 GVSKQLLPIYDKPMIYYPLSVL-MLAGIREILIITTPEDKGYFQRLLGDGSEFGIQLEYA 79
|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 214 | |||
| d1w77a1 | 226 | 4-diphosphocytidyl-2C-methyl-D-erythritol (CDP-me) | 100.0 | |
| d1w55a1 | 205 | IspD/IspF bifunctional enzyme, CDP-me synthase dom | 100.0 | |
| d1vgwa_ | 226 | 4-diphosphocytidyl-2C-methyl-D-erythritol (CDP-me) | 100.0 | |
| d1i52a_ | 225 | 4-diphosphocytidyl-2C-methyl-D-erythritol (CDP-me) | 100.0 | |
| d1vpaa_ | 221 | 4-diphosphocytidyl-2C-methyl-D-erythritol (CDP-me) | 100.0 | |
| d2oi6a2 | 248 | N-acetylglucosamine 1-phosphate uridyltransferase | 99.85 | |
| d1h7ea_ | 245 | CMP:2-keto-3-deoxy-manno-octonic acid (CMP-KDO)syn | 99.84 | |
| d1vh1a_ | 246 | CMP:2-keto-3-deoxy-manno-octonic acid (CMP-KDO)syn | 99.84 | |
| d1eyra_ | 225 | CMP acylneuraminate synthetase {Neisseria meningit | 99.83 | |
| d1vica_ | 255 | CMP:2-keto-3-deoxy-manno-octonic acid (CMP-KDO)syn | 99.83 | |
| d1g97a2 | 250 | N-acetylglucosamine 1-phosphate uridyltransferase | 99.82 | |
| d1qwja_ | 228 | CMP acylneuraminate synthetase {Mouse (Mus musculu | 99.82 | |
| d2dpwa1 | 231 | Uncharacterized protein TTHA0179 {Thermus thermoph | 99.78 | |
| d1e5ka_ | 188 | Molybdenum cofactor biosynthesis protein MobA {Esc | 99.7 | |
| d1mc3a_ | 291 | RffH {Escherichia coli [TaxId: 562]} | 99.5 | |
| d1fxoa_ | 292 | RmlA (RfbA) {Pseudomonas aeruginosa [TaxId: 287]} | 99.5 | |
| d1jyka_ | 229 | CTP:phosphocholine cytidylytransferase LicC {Strep | 99.47 | |
| d1lvwa_ | 295 | RmlA (RfbA) {Archaeon Methanobacterium thermoautot | 99.46 | |
| d1yp2a2 | 307 | Glucose-1-phosphate adenylyltransferase small subu | 99.37 | |
| d1tzfa_ | 259 | Glucose-1-phosphate cytidylyltransferase RfbF {Sal | 99.25 | |
| d2cu2a2 | 268 | Putative mannose-1-phosphate guanylyl transferase | 98.99 | |
| d2i5ea1 | 208 | Hypothetical protein MM2497 {Methanosarcina mazei | 98.71 | |
| d1omza_ | 265 | Alpha-1,4-N-acetylhexosaminyltransferase (Alpha-Ga | 96.48 | |
| d1xhba2 | 328 | Polypeptide N-acetylgalactosaminyltransferase 1, N | 92.58 | |
| d2bo4a1 | 381 | Mannosylglycerate synthase, MGS {Rhodothermus mari | 92.14 | |
| d1qg8a_ | 255 | Spore coat polysaccharide biosynthesis protein Sps | 90.67 |
| >d1w77a1 c.68.1.13 (A:75-300) 4-diphosphocytidyl-2C-methyl-D-erythritol (CDP-me) synthase (IspD, YgbP) {Thale cress (Arabidopsis thaliana), chloroplast [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-diphospho-sugar transferases superfamily: Nucleotide-diphospho-sugar transferases family: Cytidylytransferase domain: 4-diphosphocytidyl-2C-methyl-D-erythritol (CDP-me) synthase (IspD, YgbP) species: Thale cress (Arabidopsis thaliana), chloroplast [TaxId: 3702]
Probab=100.00 E-value=9.5e-40 Score=253.32 Aligned_cols=209 Identities=81% Similarity=1.220 Sum_probs=174.5
Q ss_pred CCCCCCceeeeeCCeehHHHHHHHHhcCCCcCeEEEEeCCCchHHHHHHHHhcCCcEEEecCCccHHHHHHHHHhhcccC
Q 028081 1 MGANMPKQYLPLLGQPIALYSFYTFSRMVEVKEIVVVCDPSYSDIFEETKEKINVDLKFSLPGKERQDSVYSGLQEVDFN 80 (214)
Q Consensus 1 m~~~~~K~l~~l~gkpli~~~i~~~~~~~~~~~iiVv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sv~~al~~~~~~ 80 (214)
||++.||+|++|+|||||.|+++++.+++.+++|+||+++...+.++++...++..+.++.||.+|++|+++|+..+...
T Consensus 18 m~~~~pK~l~~l~Gkpli~~~l~~~~~~~~~~~Iivv~~~~~~~~~~~~~~~~~~~~~~~~gg~~r~~sv~~~l~~~~~~ 97 (226)
T d1w77a1 18 MKMSMPKQYIPLLGQPIALYSFFTFSRMPEVKEIVVVCDPFFRDIFEEYEESIDVDLRFAIPGKERQDSVYSGLQEIDVN 97 (226)
T ss_dssp ---CCCTTTSEETTEEHHHHHHHHHHTCTTEEEEEEECCGGGTHHHHTTTTSCSSEEEEECCCSSHHHHHHHHHHTSCTT
T ss_pred CcCCCCceeeEECCeeHHHHHHHHHHhhccccceeeccchhhhhhhhccccccccccccccccchhhhhhhhhHhhhccc
Confidence 78889999999999999999999999998889999999876545555555555666788889999999999999998766
Q ss_pred CCeEEEEcCCCCCCCHHHHHHHHHHHHhcCCeEEeeeccccEEEecCCCceeeecCccchhhhcCCcccChHHHHHHHHH
Q 028081 81 SELVCIHDSARPLVLSKDVQKVLMDALRVGAAVLGVPAKATIKEANSESFVVRTLDRKTLWEMQTPQVIKPDLLKKGFEL 160 (214)
Q Consensus 81 ~~~vl~~~~d~P~v~~~~i~~~i~~~~~~~~~i~~~~~~~~~~~~~~~g~v~~~~~r~~~~~~~~p~~f~~~~l~~~~~~ 160 (214)
.++|++|+||+||++++++.++++....+++++++.+..++.+....++....+++|..++..++||.|+...|..++..
T Consensus 98 ~~~Vli~d~~~P~i~~~~i~~l~~~~~~~~~~i~~~~~~d~~~~~~~~~~~~~~~~r~~~~~~~~p~~f~~~~l~~~~~~ 177 (226)
T d1w77a1 98 SELVCIHDSARPLVNTEDVEKVLKDGSAVGAAVLGVPAKATIKEVNSDSLVVKTLDRKTLWEMQTPQVIKPELLKKGFEL 177 (226)
T ss_dssp CSEEEEEETTCTTCCHHHHHHHHHHHHHHSEEEEEEECCSCCCCBCTTSCBC------CCEEEEEEEEECHHHHHHHHHH
T ss_pred cccceecccccccccHHHhhhhhhhhhccCceeeccccccceEEEccCCceeecccchhhhHHHHHHhHhhHHHHHHHHH
Confidence 79999999999999999999999988888888888888887655444455556788999999999999999999999888
Q ss_pred HHhcCCCCCcHHHHHHhCCCCeEEEecCCCCcccCCHHHHHHHHHHhhc
Q 028081 161 VNREGLEVTDDVSIVEHLKHPVYITEGSYTNIKVTTPDDLLIAERILNL 209 (214)
Q Consensus 161 ~~~~~~~~~d~~~~~~~~g~~i~~v~~~~~~~~Idtp~Dl~~a~~~~~~ 209 (214)
..+.++++||++++++..|.++.+++++..+++||||+||++||.++++
T Consensus 178 ~~~~~~~~TD~~~l~~~~g~~v~~v~g~~~n~KItt~eDl~~ae~lL~~ 226 (226)
T d1w77a1 178 VKSEGLEVTDDVSIVEYLKHPVYVSQGSYTNIKVTTPDDLLLAERILSE 226 (226)
T ss_dssp HHHSCCCCCC-CCTTGGGSSCCEEEECCTTCCCCCSHHHHHHHHHHHHC
T ss_pred HHhcCCCcCcHHHHHHHCCCceEEEECChhhcCcCCHHHHHHHHHHhCc
Confidence 7777788999998888899999999999999999999999999999874
|
| >d1w55a1 c.68.1.13 (A:3-207) IspD/IspF bifunctional enzyme, CDP-me synthase domain {Campylobacter jejuni [TaxId: 197]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-diphospho-sugar transferases superfamily: Nucleotide-diphospho-sugar transferases family: Cytidylytransferase domain: IspD/IspF bifunctional enzyme, CDP-me synthase domain species: Campylobacter jejuni [TaxId: 197]
Probab=100.00 E-value=7.5e-38 Score=238.40 Aligned_cols=186 Identities=27% Similarity=0.394 Sum_probs=162.5
Q ss_pred CCCCCCceeeeeCCeehHHHHHHHHhcCCCcCeEEEEeCCCchHHHHHHHHhcCCcEEEecCCccHHHHHHHHHhhcccC
Q 028081 1 MGANMPKQYLPLLGQPIALYSFYTFSRMVEVKEIVVVCDPSYSDIFEETKEKINVDLKFSLPGKERQDSVYSGLQEVDFN 80 (214)
Q Consensus 1 m~~~~~K~l~~l~gkpli~~~i~~~~~~~~~~~iiVv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sv~~al~~~~~~ 80 (214)
||++.||+|++++|||||.|+++++.+++.++.|+|+++.. +.+ +.+...+.++.||.+|+.|+++|++.++
T Consensus 15 mg~~~pK~~~~i~gkpii~~~l~~~~~~~~~~~Ivvv~~~~--~~~----~~~~~~~~~v~Gg~~r~~Sv~~gl~~~~-- 86 (205)
T d1w55a1 15 FNTKVKKQFLRLGNDPLWLYATKNLSSFYPFKKIVVTSSNI--TYM----KKFTKNYEFIEGGDTRAESLKKALELID-- 86 (205)
T ss_dssp TCSSSCGGGCEEBTEEHHHHHHHHHHTTSCCSCEEEEESCH--HHH----HTTCSSSEEEECCSSHHHHHHHHHTTCC--
T ss_pred CCcCCCceeEEECCEEHHHHHHHHHHhhccccccccccccc--ccc----ccccccccccccccchhhhhhhhhhhhh--
Confidence 88889999999999999999999999888789998887642 222 3444467788899999999999999985
Q ss_pred CCeEEEEcCCCCCCCHHHHHHHHHHHHhcCCeEEeeeccccEEEecCCCceeeecCccchhhhcCCcccChHHHHHHHHH
Q 028081 81 SELVCIHDSARPLVLSKDVQKVLMDALRVGAAVLGVPAKATIKEANSESFVVRTLDRKTLWEMQTPQVIKPDLLKKGFEL 160 (214)
Q Consensus 81 ~~~vl~~~~d~P~v~~~~i~~~i~~~~~~~~~i~~~~~~~~~~~~~~~g~v~~~~~r~~~~~~~~p~~f~~~~l~~~~~~ 160 (214)
.++|++||||+||+++++|+++++...++++++++.++.|++...+ .+++|+.++.+||||+|+.+.|.+++.
T Consensus 87 ~~~VlIhd~~rP~i~~~~i~~li~~~~~~~~~i~~~~~~dti~~~~------~~~~R~~l~~~qTPQ~f~~~~l~~a~~- 159 (205)
T d1w55a1 87 SEFVMVSDVARVLVSKNLFDRLIENLDKADCITPALKVADTTLFDN------EALQREKIKLIQTPQISKTKLLKKALD- 159 (205)
T ss_dssp SSEEEEEETTCTTCCHHHHHHHHTTGGGCSEEEEEECCCSCEEETT------EEECGGGCCEECSCEEEEHHHHHHHTS-
T ss_pred hcceeeeccCcccCcHHHHHHHHhhhhccccccccccccccccccc------ccccchheeeeecchhhhhHHHHHHHH-
Confidence 6899999999999999999999998888889999999999876532 457999999999999999988877653
Q ss_pred HHhcCCCCCcHHHHHHhCCCCeEEEecCCCCcccCCHHHHHHHH
Q 028081 161 VNREGLEVTDDVSIVEHLKHPVYITEGSYTNIKVTTPDDLLIAE 204 (214)
Q Consensus 161 ~~~~~~~~~d~~~~~~~~g~~i~~v~~~~~~~~Idtp~Dl~~a~ 204 (214)
+++++||++++++..|.++.+++++..|++||||+||+.||
T Consensus 160 ---~~~~~tDd~~~~~~~g~~v~~i~g~~~N~KIT~~eDl~~~e 200 (205)
T d1w55a1 160 ---QNLEFTDDSTAIAAMGGKIWFVEGEENARKLTFKEDLKKLD 200 (205)
T ss_dssp ---SCCCCSSHHHHHHTTTCCEEEEECCGGGCCCCSGGGGGGSC
T ss_pred ---cCCCCCcHHHHHHHcCCCEEEEecCcccCCCCCHHHHHHhc
Confidence 45678999999999999999999999999999999999876
|
| >d1vgwa_ c.68.1.13 (A:) 4-diphosphocytidyl-2C-methyl-D-erythritol (CDP-me) synthase (IspD, YgbP) {Neisseria gonorrhoeae [TaxId: 485]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-diphospho-sugar transferases superfamily: Nucleotide-diphospho-sugar transferases family: Cytidylytransferase domain: 4-diphosphocytidyl-2C-methyl-D-erythritol (CDP-me) synthase (IspD, YgbP) species: Neisseria gonorrhoeae [TaxId: 485]
Probab=100.00 E-value=4.6e-34 Score=221.05 Aligned_cols=204 Identities=26% Similarity=0.414 Sum_probs=162.8
Q ss_pred CCCCCCceeeeeCCeehHHHHHHHHhcCCCcCeEEEEeCCCchHHHHHHHHhcCCcEEEecCCccHHHHHHHHHhhcc--
Q 028081 1 MGANMPKQYLPLLGQPIALYSFYTFSRMVEVKEIVVVCDPSYSDIFEETKEKINVDLKFSLPGKERQDSVYSGLQEVD-- 78 (214)
Q Consensus 1 m~~~~~K~l~~l~gkpli~~~i~~~~~~~~~~~iiVv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sv~~al~~~~-- 78 (214)
||++.||+|++++|||||.|+++++++++.++.|+||+++++. ........+.....+..|+.+++.++.+|+..+.
T Consensus 17 m~~~~pK~l~~i~gkpli~~~i~~~~~~~~~~~iivv~~~~~~-~~~~~~~~~~~~~~~~~g~~~~~~s~~~~l~~~~~~ 95 (226)
T d1vgwa_ 17 FGADKPKQYVEIGSKTVLEHVLGIFERHEAVDLTVVVVSPEDT-FADKVQTAFPQVRVWKNGGQTRAETVRNGVAKLLET 95 (226)
T ss_dssp -----CCSCCEETTEEHHHHHHHHHHTCTTCCEEEEECCTTCS-THHHHHHHCTTSEEECCCCSSHHHHHHHHHHHHHHH
T ss_pred CCcCCCeeeeEECCEEHHHHHHHHHHhCCCccccceecchhhh-hhhhhcccccceeeccccccccchhhhHHHHHHHHh
Confidence 7888999999999999999999999999888999999887652 2333333444455667788889999999887663
Q ss_pred ---cCCCeEEEEcCCCCCCCHHHHHHHHHHHHhc-CCeEEeeeccccEEEecCCCceeeecCccchhhhcCCcccChHHH
Q 028081 79 ---FNSELVCIHDSARPLVLSKDVQKVLMDALRV-GAAVLGVPAKATIKEANSESFVVRTLDRKTLWEMQTPQVIKPDLL 154 (214)
Q Consensus 79 ---~~~~~vl~~~~d~P~v~~~~i~~~i~~~~~~-~~~i~~~~~~~~~~~~~~~g~v~~~~~r~~~~~~~~p~~f~~~~l 154 (214)
.+.++|+++++|+||+++++++++++.+... ..++++.+..++....+ +|.+..+++|+.++..++|+.|..+.|
T Consensus 96 ~~~~~~~~v~~~~~~~P~i~~~~i~~~i~~~~~~~~~~i~~~~~~~~~~~~~-~~~i~~~~~r~~~~~~~~p~~f~~~~l 174 (226)
T d1vgwa_ 96 GLAAETDNILVHDAARCCLPSEALARLIEQAGNAAEGGILAVPVADTLKRAE-SGQISATVDRSGLWQAQTPQLFQAGLL 174 (226)
T ss_dssp SSSCTTSEEEECCTTCTTCCHHHHHHHHHHHTTCTTCEEEEEECCSCEEEES-SSBEEEEECCTTEEEEEEEEEEEHHHH
T ss_pred cccccccceeecccccccCcHHHHHHHHhhhcccccceeecccccccceecc-CCeEEeccchHHHHHHHhhhcccHHHH
Confidence 2468999999999999999999999987654 34677788888776655 567778889999999999999999888
Q ss_pred HHHHHHHHhcCCCCCcHHHHHHhCCCCeEEEecCCCCcccCCHHHHHHHHHHhh
Q 028081 155 KKGFELVNREGLEVTDDVSIVEHLKHPVYITEGSYTNIKVTTPDDLLIAERILN 208 (214)
Q Consensus 155 ~~~~~~~~~~~~~~~d~~~~~~~~g~~i~~v~~~~~~~~Idtp~Dl~~a~~~~~ 208 (214)
...+... +..++||+.+++++.|.++.+++++..+++||||+||+.||.++.
T Consensus 175 ~~~~~~~--~~~~~tD~~~l~~~~g~~v~~v~g~~~nikItt~eDl~~ae~ll~ 226 (226)
T d1vgwa_ 175 HRALAAE--NLGGITDEASAVEKLGVRPLLIQGDARNLKLTQPQDAYIVRLLLD 226 (226)
T ss_dssp HHHHHC------CCCSHHHHHHTTTCCCEEEECCTTCCCCCSHHHHHHHHHHCC
T ss_pred HHHHHHh--hcCCCCcHHHHHHHcCCceEEEECCccccCcCCHHHHHHHHHHhC
Confidence 7776542 235789999999999999999999999999999999999999873
|
| >d1i52a_ c.68.1.13 (A:) 4-diphosphocytidyl-2C-methyl-D-erythritol (CDP-me) synthase (IspD, YgbP) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-diphospho-sugar transferases superfamily: Nucleotide-diphospho-sugar transferases family: Cytidylytransferase domain: 4-diphosphocytidyl-2C-methyl-D-erythritol (CDP-me) synthase (IspD, YgbP) species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=1.5e-32 Score=211.94 Aligned_cols=207 Identities=31% Similarity=0.455 Sum_probs=171.0
Q ss_pred CCCCCCceeeeeCCeehHHHHHHHHhcCCCcCeEEEEeCCCchHHHHHHHHhcCCcEEEecCCccHHHHHHHHHhhcccC
Q 028081 1 MGANMPKQYLPLLGQPIALYSFYTFSRMVEVKEIVVVCDPSYSDIFEETKEKINVDLKFSLPGKERQDSVYSGLQEVDFN 80 (214)
Q Consensus 1 m~~~~~K~l~~l~gkpli~~~i~~~~~~~~~~~iiVv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sv~~al~~~~~~ 80 (214)
||++.||+|++++|||||.|+++++.+++.+++|+||++++... +..........+....++.+...|+++|+..+. +
T Consensus 17 m~~~~pK~L~~i~gkplI~~~i~~~~~~~~i~~Iivv~~~~~~~-~~~~~~~~~~~v~~~~~~~~~~~sv~~~~~~~~-~ 94 (225)
T d1i52a_ 17 MQTECPKQYLSIGNQTILEHSVHALLAHPRVKRVVIAISPGDSR-FAQLPLANHPQITVVDGGDERADSVLAGLKAAG-D 94 (225)
T ss_dssp GCCSSCGGGSEETTEEHHHHHHHHHHTSTTEEEEEEEECTTCCS-GGGSGGGGCTTEEEEECCSSHHHHHHHHHHTST-T
T ss_pred CCCCCCcceeEECCEEHHHHHHHHHHhCccccccccccchhhhh-hhhhhhccccccccccCCcchhHHHHhhhcccC-c
Confidence 78899999999999999999999999887799999999877532 222222223456666676778899999998886 4
Q ss_pred CCeEEEEcCCCCCCCHHHHHHHHHHHHhc-CCeEEeeeccccEEEec-CCCceeeecCccchhhhcCCcccChHHHHHHH
Q 028081 81 SELVCIHDSARPLVLSKDVQKVLMDALRV-GAAVLGVPAKATIKEAN-SESFVVRTLDRKTLWEMQTPQVIKPDLLKKGF 158 (214)
Q Consensus 81 ~~~vl~~~~d~P~v~~~~i~~~i~~~~~~-~~~i~~~~~~~~~~~~~-~~g~v~~~~~r~~~~~~~~p~~f~~~~l~~~~ 158 (214)
.+.|+++++|+||++++++.++++..... ...+.+.+..++.+... ..+....+++|..++..++|+.|..+.+...+
T Consensus 95 ~~~vl~~~~~~p~i~~~~~~~~~~~~~~~~~~~v~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~l~~~~ 174 (225)
T d1i52a_ 95 AQWVLVHDAARPCLHQDDLARLLALSETSRTGGILAAPVRDTMKRAEPGKNAIAHTVDRNGLWHALTPQFFPRELLHDCL 174 (225)
T ss_dssp CSEEEECCTTCTTCCHHHHHHHHGGGGTCSSCEEEEEECCSCEEEECTTSSSEEEEECCTTCEEEEEEEEEEHHHHHHHH
T ss_pred cceeeeeccCCCCCCHHHHHHHHhhhhhcccccccccceeeccchhcccccccccccchHHHHHHhhhhhhhhHHHHHHH
Confidence 68999999999999999999999877654 34677788888776642 23445567788888889999999999999888
Q ss_pred HHHHhcCCCCCcHHHHHHhCCCCeEEEecCCCCcccCCHHHHHHHHHHhhc
Q 028081 159 ELVNREGLEVTDDVSIVEHLKHPVYITEGSYTNIKVTTPDDLLIAERILNL 209 (214)
Q Consensus 159 ~~~~~~~~~~~d~~~~~~~~g~~i~~v~~~~~~~~Idtp~Dl~~a~~~~~~ 209 (214)
....+.++++||...++...|.++.+++++..+++|||||||+.||.++++
T Consensus 175 ~~~~~~~~~~tD~~~l~~~~g~~v~~v~~~~~nikItt~eDl~~Ae~~l~r 225 (225)
T d1i52a_ 175 TRALNEGATITDEASALEYCGFHPQLVEGRADNIKVTRPEDLALAEFYLTR 225 (225)
T ss_dssp HHHHHTTCCCCSHHHHHHHTTCCCEEEECCTTCCCCCSHHHHHHHHHHHCC
T ss_pred HHHHhcCCCCCcHHHHHHHCCCceEEEecCccccCcCCHHHHHHHHHHhCc
Confidence 877777789999999999999999999998889999999999999999863
|
| >d1vpaa_ c.68.1.13 (A:) 4-diphosphocytidyl-2C-methyl-D-erythritol (CDP-me) synthase (IspD, YgbP) {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-diphospho-sugar transferases superfamily: Nucleotide-diphospho-sugar transferases family: Cytidylytransferase domain: 4-diphosphocytidyl-2C-methyl-D-erythritol (CDP-me) synthase (IspD, YgbP) species: Thermotoga maritima [TaxId: 2336]
Probab=100.00 E-value=5.5e-32 Score=208.52 Aligned_cols=203 Identities=30% Similarity=0.406 Sum_probs=165.6
Q ss_pred CCCCCCceeeeeCCeehHHHHHHHHhcCCCcCeEEEEeCCCchHHHHHHHHhcCCcEEEecCCccHHHHHHHHHhhccc-
Q 028081 1 MGANMPKQYLPLLGQPIALYSFYTFSRMVEVKEIVVVCDPSYSDIFEETKEKINVDLKFSLPGKERQDSVYSGLQEVDF- 79 (214)
Q Consensus 1 m~~~~~K~l~~l~gkpli~~~i~~~~~~~~~~~iiVv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sv~~al~~~~~- 79 (214)
||++.||+|++++|||||+|+++++.+++.+++|+|+++.+..+.+... ......+.++.++.++..++.+++..+..
T Consensus 17 m~~~~pK~l~~i~gkpli~~~i~~~~~~~~~~~Iivv~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~ 95 (221)
T d1vpaa_ 17 MSENVPKQFLEIEGRMLFEYPLSTFLKSEAIDGVVIVTRREWFEVVEKR-VFHEKVLGIVEGGDTRSQSVRSALEFLEKF 95 (221)
T ss_dssp GCCSSCGGGCEETTEETTHHHHHHHHHCTTCSEEEEEECGGGHHHHHTT-CCCTTEEEEEECCSSHHHHHHHHHHHHGGG
T ss_pred CCCCCCcceeEECCEEHHHHHHHHHHhccccccceEEecchhhhHHHhh-hccccccccccccccccchHHHHHHHHHhc
Confidence 7888999999999999999999999988778999999987653322211 11223566778888889999999877743
Q ss_pred CCCeEEEEcCCCCCCCHHHHHHHHHHHHhcCCeEEeeeccccEEEecCCCceeeecCccchhhhcCCcccChHHHHHHHH
Q 028081 80 NSELVCIHDSARPLVLSKDVQKVLMDALRVGAAVLGVPAKATIKEANSESFVVRTLDRKTLWEMQTPQVIKPDLLKKGFE 159 (214)
Q Consensus 80 ~~~~vl~~~~d~P~v~~~~i~~~i~~~~~~~~~i~~~~~~~~~~~~~~~g~v~~~~~r~~~~~~~~p~~f~~~~l~~~~~ 159 (214)
..+.+++++||+||+++++++++++.+.+...++.+.+..+++..... + ....++|+.++..++|+.|+...+..++.
T Consensus 96 ~~~~v~~~~~d~p~~~~~~i~~li~~~~~~~~~~~~~~~~d~~~~~~~-~-~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 173 (221)
T d1vpaa_ 96 SPSYVLVHDSARPFLRKKHVSEVLRRARETGAATLALKNSDALVRVEN-D-RIEYIPRKGVYRILTPQAFSYEILKKAHE 173 (221)
T ss_dssp CCSEEEEEETTSCCCCHHHHHHHHHHHHHHSEEEEEEECCSEEEEEET-T-EEEEECCTTEEEEEEEEEEEHHHHHHHHT
T ss_pred CCCcEEEeccccccccHHHHHhhhhhhcccccccccccccceeEeecC-c-cceecchHHHHHhhhhhhhhHHHHHHHHH
Confidence 468999999999999999999999998887777778888887766542 2 23446788888899999999877766543
Q ss_pred HHHhcCCCCCcHHHHHHhCCCCeEEEecCCCCcccCCHHHHHHHHHHhhcc
Q 028081 160 LVNREGLEVTDDVSIVEHLKHPVYITEGSYTNIKVTTPDDLLIAERILNLS 210 (214)
Q Consensus 160 ~~~~~~~~~~d~~~~~~~~g~~i~~v~~~~~~~~Idtp~Dl~~a~~~~~~~ 210 (214)
++.++||+.+++...|.++.+++++..+++|||||||++||.+++++
T Consensus 174 ----~~~~~tD~~~l~~~~g~~v~~i~g~~~n~kI~t~eDl~~Ae~llk~~ 220 (221)
T d1vpaa_ 174 ----NGGEWADDTEPVQKLGVKIALVEGDPLCFKVTFKEDLELARIIAREW 220 (221)
T ss_dssp ----TCCCCSSSHHHHHTTTCCCEEEECCGGGCCCCSTTHHHHHHHHHHHH
T ss_pred ----hCCCCccHHHHHHHcCCceEEEecChhhcCCCCHHHHHHHHHHHhcc
Confidence 45678999999999999999999988899999999999999999865
|
| >d2oi6a2 c.68.1.5 (A:4-251) N-acetylglucosamine 1-phosphate uridyltransferase GlmU, N-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-diphospho-sugar transferases superfamily: Nucleotide-diphospho-sugar transferases family: UDP-glucose pyrophosphorylase domain: N-acetylglucosamine 1-phosphate uridyltransferase GlmU, N-terminal domain species: Escherichia coli [TaxId: 562]
Probab=99.85 E-value=7.5e-21 Score=147.21 Aligned_cols=208 Identities=12% Similarity=0.087 Sum_probs=137.2
Q ss_pred CCCCCCceeeeeCCeehHHHHHHHHhcCCCcCeEEEEeCCCchHHHHHHHHhcCCcEEEecCCccHHHHHHHHHhhcccC
Q 028081 1 MGANMPKQYLPLLGQPIALYSFYTFSRMVEVKEIVVVCDPSYSDIFEETKEKINVDLKFSLPGKERQDSVYSGLQEVDFN 80 (214)
Q Consensus 1 m~~~~~K~l~~l~gkpli~~~i~~~~~~~~~~~iiVv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sv~~al~~~~~~ 80 (214)
|++++||+|++++|||||+|+++++...+ +++|+|++++.. +.+.............-....+..+++..+...+..
T Consensus 16 m~~~~PKpli~i~gkpiie~~i~~l~~~~-~~~iiiv~~~~~-~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~i~~- 92 (248)
T d2oi6a2 16 MYSDLPKVLHTLAGKAMVQHVIDAANELG-AAHVHLVYGHGG-DLLKQALKDDNLNWVLQAEQLGTGHAMQQAAPFFAD- 92 (248)
T ss_dssp GCCSSCGGGSEETTEEHHHHHHHHHHHHT-CSCEEEEESSCH-HHHHHHCCCTTEEEEECSSCCCHHHHHHHHGGGSCT-
T ss_pred CCCCCCeeeEEECChhHHHHHHHHHHHcC-CcEEEeccCccc-ceeeeecccccccccccccCcccHHHHHhhhhhhcc-
Confidence 56789999999999999999999999985 899999999875 333332221111111222344567888888887753
Q ss_pred CCeEEEEcCCCCCCCHHHHHHHHHHHHhcCCeEEeeeccccE---EEecCCCceeeecC--------ccchhhhcCCccc
Q 028081 81 SELVCIHDSARPLVLSKDVQKVLMDALRVGAAVLGVPAKATI---KEANSESFVVRTLD--------RKTLWEMQTPQVI 149 (214)
Q Consensus 81 ~~~vl~~~~d~P~v~~~~i~~~i~~~~~~~~~i~~~~~~~~~---~~~~~~g~v~~~~~--------r~~~~~~~~p~~f 149 (214)
...++++.+|.|+.+...+..+.........++...+..++. .....+|....... +.......+++.|
T Consensus 93 ~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 172 (248)
T d2oi6a2 93 DEDILMLYGDVPLISVETLQRLRDAKPQGGIGLLTVKLDDPTGYGRITRENGKVTGIVEHKDATDEQRQIQEINTGILIA 172 (248)
T ss_dssp TSEEEEEETTCTTCCHHHHHHHHHHCCTTSEEEEEEECSCCTTSCEEEEETTEEEEEECGGGCCTTGGGCCEEEEEEEEE
T ss_pred ccceeeecCccccccchhHHHHHHHhhccccceeEEEecCCccccccccccCccceeeeccCCChhhhhhhhhhhhhhcc
Confidence 356788889999999998888876554444444444454421 11111232222211 1112223345778
Q ss_pred ChHHHHHHHHHHH----hcCCCCCcHHHHHHhCCCCeEEEecCCCC--cccCCHHHHHHHHHHhhccc
Q 028081 150 KPDLLKKGFELVN----REGLEVTDDVSIVEHLKHPVYITEGSYTN--IKVTTPDDLLIAERILNLSS 211 (214)
Q Consensus 150 ~~~~l~~~~~~~~----~~~~~~~d~~~~~~~~g~~i~~v~~~~~~--~~Idtp~Dl~~a~~~~~~~~ 211 (214)
+...|.+.+.... ..+++++|....+...|.+|..+..+..+ ++||||+||+.||++++.++
T Consensus 173 ~~~~l~~~l~~~~~~~~~~e~~ltd~~~~~~~~g~~v~~v~~~~~~e~~gI~t~eDL~~ae~i~~~~~ 240 (248)
T d2oi6a2 173 NGADMKRWLAKLTNNNAQGEYYITDIIALAYQEGREIVAVHPQRLSEVEGVNNRLQLSRLERVYQSEQ 240 (248)
T ss_dssp EHHHHHHHHTTCCCCSTTCSCCTTHHHHHHHHTTCCEEEECCSSGGGGCCCSSHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHhhccccchhhhhhHHHHHHHHCCCeEEEEEcCCHHHhCCCCCHHHHHHHHHHHHHHH
Confidence 8777766554321 12367899888888899999988765433 47999999999999998764
|
| >d1h7ea_ c.68.1.13 (A:) CMP:2-keto-3-deoxy-manno-octonic acid (CMP-KDO)synthetase {Escherichia coli, KpsU [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-diphospho-sugar transferases superfamily: Nucleotide-diphospho-sugar transferases family: Cytidylytransferase domain: CMP:2-keto-3-deoxy-manno-octonic acid (CMP-KDO)synthetase species: Escherichia coli, KpsU [TaxId: 562]
Probab=99.84 E-value=9.3e-21 Score=146.86 Aligned_cols=205 Identities=15% Similarity=0.167 Sum_probs=127.6
Q ss_pred CCCC-CC-ceeeeeCCeehHHHHHHHHhcCCCcCeEEEEeCCCchHHHHHHHHhcCCcEEEecCCc-cHHHHHHHHHhhc
Q 028081 1 MGAN-MP-KQYLPLLGQPIALYSFYTFSRMVEVKEIVVVCDPSYSDIFEETKEKINVDLKFSLPGK-ERQDSVYSGLQEV 77 (214)
Q Consensus 1 m~~~-~~-K~l~~l~gkpli~~~i~~~~~~~~~~~iiVv~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~sv~~al~~~ 77 (214)
|||. .| |+|++|+|||||+|+++++++++.+++|+|+|+++. +...+..+|..+....+.. +....+..++..+
T Consensus 11 ~~SkRl~~Knl~~i~GkPli~~~i~~a~~~~~~d~Iiv~td~~~---i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 87 (245)
T d1h7ea_ 11 YGSSRLPGKPLLDIVGKPMIQHVYERALQVAGVAEVWVATDDPR---VEQAVQAFGGKAIMTRNDHESGTDRLVEVMHKV 87 (245)
T ss_dssp SCCSSSTTGGGCEETTEEHHHHHHHHHHTCTTCCEEEEEESCHH---HHHHHHHTTCEEEECCSCCSSHHHHHHHHHHHS
T ss_pred CCCcCCCCccccccCCccHHHHHHHHHHhCCCCCeEEEeccccc---chhhhhhcCceEEEecCccccccHHHHHHHHhc
Confidence 5775 46 999999999999999999999999999999998764 4566677776665544322 2345566666666
Q ss_pred ccCCCeEEEEcCCCCCCCHHHHHHHHHHHHhcC--CeEEeeecccc--------EEEe-cCCCceeee-cC-----cc--
Q 028081 78 DFNSELVCIHDSARPLVLSKDVQKVLMDALRVG--AAVLGVPAKAT--------IKEA-NSESFVVRT-LD-----RK-- 138 (214)
Q Consensus 78 ~~~~~~vl~~~~d~P~v~~~~i~~~i~~~~~~~--~~i~~~~~~~~--------~~~~-~~~g~v~~~-~~-----r~-- 138 (214)
. .|.++++++|.||++.+.++.+++.+.... ........... +... ...+..... .. +.
T Consensus 88 ~--~d~vv~l~~~~p~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vk~~~~~~~~~~~~~~~~~~~~~~~~ 165 (245)
T d1h7ea_ 88 E--ADIYINLQGDEPMIRPRDVETLLQGMRDDPALPVATLCHAISAAEAAEPSTVKVVVNTRQDALYFSRSPIPYPRNAE 165 (245)
T ss_dssp C--CSEEEECCTTCTTCCHHHHHHHHHHHHHCTTCCEEEEEEEECHHHHTCTTSCEEEECTTCBEEEEESSCSSCCTTGG
T ss_pred C--CCEEEEecchhhhcccccchhhhhcccccccccccccccccccccccCCcceeeccchhhhhhhhhhhhhhhhhccc
Confidence 5 689999999999999999999999776432 22222221111 1111 111111100 00 00
Q ss_pred --chhhhcCCcccChHHHHHHHHHHHhcCCCCCcHHHH--HHhCCCCeEEEecCCCCcccCCHHHHHHHHHHhhccc
Q 028081 139 --TLWEMQTPQVIKPDLLKKGFELVNREGLEVTDDVSI--VEHLKHPVYITEGSYTNIKVTTPDDLLIAERILNLSS 211 (214)
Q Consensus 139 --~~~~~~~p~~f~~~~l~~~~~~~~~~~~~~~d~~~~--~~~~g~~i~~v~~~~~~~~Idtp~Dl~~a~~~~~~~~ 211 (214)
..+..-+.+.|+...|..... ...+..+..+..++ +...|.+|.++..+..+++||||+||+.||.+++.+.
T Consensus 166 ~~~~~~~~g~~~~~~~~l~~~~~-~~~s~~e~~e~ie~lr~l~ng~~I~~~~~~~~~~~IDt~~Dl~~a~~il~~~~ 241 (245)
T d1h7ea_ 166 KARYLKHVGIYAYRRDVLQNYSQ-LPESMPEQAESLEQLRLMNAGINIRTFEVAATGPGVDTPACLEKVRALMAQEL 241 (245)
T ss_dssp GCCEEEEEEEEEEEHHHHHHGGG-SCCCHHHHHHTCTTHHHHHTTCCEEEEECCCCCCCSSSHHHHHHHHHHHHHHH
T ss_pred ccccceeeeeEEeeecccccccc-ccCChhhhhhhHHHHHHHHCCCeEEEEEeCCCCCCCCCHHHHHHHHHHHHhhh
Confidence 001111235666665544211 00000000001112 2247899998888778899999999999999998653
|
| >d1vh1a_ c.68.1.13 (A:) CMP:2-keto-3-deoxy-manno-octonic acid (CMP-KDO)synthetase {Escherichia coli, KdsB [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-diphospho-sugar transferases superfamily: Nucleotide-diphospho-sugar transferases family: Cytidylytransferase domain: CMP:2-keto-3-deoxy-manno-octonic acid (CMP-KDO)synthetase species: Escherichia coli, KdsB [TaxId: 562]
Probab=99.84 E-value=1.2e-20 Score=146.49 Aligned_cols=202 Identities=12% Similarity=0.204 Sum_probs=124.9
Q ss_pred CCCC-CC-ceeeeeCCeehHHHHHHHHhcCCCcCeEEEEeCCCchHHHHHHHHhcCCcEEEecCC-ccHHHHHHHHHhhc
Q 028081 1 MGAN-MP-KQYLPLLGQPIALYSFYTFSRMVEVKEIVVVCDPSYSDIFEETKEKINVDLKFSLPG-KERQDSVYSGLQEV 77 (214)
Q Consensus 1 m~~~-~~-K~l~~l~gkpli~~~i~~~~~~~~~~~iiVv~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~sv~~al~~~ 77 (214)
|||. .| |+|++|+|+|||+|++++++++. +++|+|+|+++. +.+.+..+|..+.+..+. .+..+.+..++...
T Consensus 10 ~gSkrip~KnL~~i~GkpLI~~~i~~a~~s~-i~~iiVsTd~~~---i~~~~~~~g~~v~~~~~~~~~~~~~~~~~~~~~ 85 (246)
T d1vh1a_ 10 YASTRLPGKPLVDINGKPMIVHVLERARESG-AERIIVATDHED---VARAVEAAGGEVCMTRADHQSGTERLAEVVEKC 85 (246)
T ss_dssp CCCC--CCTTTCEETTEEHHHHHHHHHHHTT-CSEEEEEESCHH---HHHHHHHTTCEEEECC-----CHHHHHHHHHHT
T ss_pred CCCcCCCCchhhhcCCccHHHHHHHHHHHcC-CCcEEEEecCcc---ccchhhcccccceeecccccccchHHHHHHHhh
Confidence 6775 57 99999999999999999999986 899999998765 566777888776554321 11123344444443
Q ss_pred c-cCCCeEEEEcCCCCCCCHHHHHHHHHHHHhc--CCeEEeeecccc--------EEEe-cCCCceeee----cC--c--
Q 028081 78 D-FNSELVCIHDSARPLVLSKDVQKVLMDALRV--GAAVLGVPAKAT--------IKEA-NSESFVVRT----LD--R-- 137 (214)
Q Consensus 78 ~-~~~~~vl~~~~d~P~v~~~~i~~~i~~~~~~--~~~i~~~~~~~~--------~~~~-~~~g~v~~~----~~--r-- 137 (214)
. .+.+.++.+++|.||+++++++.+++.+... +.+..+.+..+. ++.+ +.+|.+... .+ +
T Consensus 86 ~~~~~~~i~~~~~d~pl~~~~~i~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~vk~v~~~~~~~~~~~~~~~~~~~~~ 165 (246)
T d1vh1a_ 86 AFSDDTVIVNVQGDEPMIPATIIRQVADNLAQRQVGMATLAVPIHNAEEAFNPNAVKVVLDAEGYALYFSRATIPWDRDR 165 (246)
T ss_dssp TCCTTCEEEECCTTCTTCCHHHHHHHHHHHHHSSSSEEEEEEECCCHHHHTCTTSCEEEECTTSBEEEEESSCSSCCHHH
T ss_pred cccccceeeeeccccccchhhHHHHHhhhhcccccccccccccccchhcccCCCcceeeecccCcccccccccchhhhhh
Confidence 2 3568899999999999999999999987654 334444544332 1111 223332211 00 0
Q ss_pred ---------cchhhhcCCcccChHHHHHHHHHHHhcCCCCCcHHHHH--HhCCCCeEEEe-cCCCCcccCCHHHHHHHHH
Q 028081 138 ---------KTLWEMQTPQVIKPDLLKKGFELVNREGLEVTDDVSIV--EHLKHPVYITE-GSYTNIKVTTPDDLLIAER 205 (214)
Q Consensus 138 ---------~~~~~~~~p~~f~~~~l~~~~~~~~~~~~~~~d~~~~~--~~~g~~i~~v~-~~~~~~~Idtp~Dl~~a~~ 205 (214)
..++...+.++|++..|...... ..+..+..+..+++ ..+|.+|.++. .+...++||||+||++||+
T Consensus 166 ~~~~~~~~~~~~~~~~giy~~~~~~l~~~~~~-~~s~~E~~e~le~lR~i~~g~~i~~~~~~~~~~~~IDt~~Dl~~a~k 244 (246)
T d1vh1a_ 166 FAEGLETVGDNFLRHLGIYGYRAGFIRRYVNW-QPSPLEHIEMLEQLRVLWYGEKIHVAVAQEVPGTGVDTPEDLERVRA 244 (246)
T ss_dssp HSSCCCCCCSCCEEEEEEEEEEHHHHHHHHHS-CCCHHHHHHTCTTHHHHHTTCCEEEEECSSCCCCCCCSHHHHHHHHH
T ss_pred hhhhhhccchhhheecceeeechhhhhhhccC-CCChHHHHHhHHHHHHHHCCCceEEEEecCCCCCCCCCHHHHHHHHh
Confidence 11112223467777766553221 00000000001122 24789998654 4567899999999999998
Q ss_pred Hh
Q 028081 206 IL 207 (214)
Q Consensus 206 ~~ 207 (214)
+|
T Consensus 245 ~m 246 (246)
T d1vh1a_ 245 EM 246 (246)
T ss_dssp HC
T ss_pred cC
Confidence 75
|
| >d1eyra_ c.68.1.13 (A:) CMP acylneuraminate synthetase {Neisseria meningitidis [TaxId: 487]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-diphospho-sugar transferases superfamily: Nucleotide-diphospho-sugar transferases family: Cytidylytransferase domain: CMP acylneuraminate synthetase species: Neisseria meningitidis [TaxId: 487]
Probab=99.83 E-value=6.1e-20 Score=140.16 Aligned_cols=193 Identities=19% Similarity=0.230 Sum_probs=123.7
Q ss_pred CCC-CCC-ceeeeeCCeehHHHHHHHHhcCCCcCeEEEEeCCCchHHHHHHHHhcCCcEEEe-----cCCccHHHHHHHH
Q 028081 1 MGA-NMP-KQYLPLLGQPIALYSFYTFSRMVEVKEIVVVCDPSYSDIFEETKEKINVDLKFS-----LPGKERQDSVYSG 73 (214)
Q Consensus 1 m~~-~~~-K~l~~l~gkpli~~~i~~~~~~~~~~~iiVv~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~sv~~a 73 (214)
+|| ..| |+|++++|+|||+|+++++++++.+++|+|+++++. +.+.++.++..+... .+..+....+.++
T Consensus 13 ~~S~R~p~K~l~~i~gkpLi~~~i~~~~~s~~~~~Iiv~td~~~---i~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 89 (225)
T d1eyra_ 13 QNSKGLPLKNLRKMNGISLLGHTINAAISSKCFDRIIVSTDGGL---IAEEAKNFGVEVVLRPAELASDTASSISGVIHA 89 (225)
T ss_dssp SCCSSSTTGGGCEETTEEHHHHHHHHHHHHTCCSEEEEEESCHH---HHHHHHHTTCEEEECCHHHHSTTCCHHHHHHHH
T ss_pred CCCcCCCCccccccCCeEHHHHHHHHHHHcCCCceEEEeeccch---hhhhhhhhcceeeeeccccccccccchhhcccc
Confidence 355 355 999999999999999999999988899999998754 566778887654332 2333445667778
Q ss_pred HhhcccCCCeEEEEcCCCCCCCHHHHHHHHHHHHhc--CCeEEeeecccc----EEEecCCCceeeecCccch--hhhcC
Q 028081 74 LQEVDFNSELVCIHDSARPLVLSKDVQKVLMDALRV--GAAVLGVPAKAT----IKEANSESFVVRTLDRKTL--WEMQT 145 (214)
Q Consensus 74 l~~~~~~~~~vl~~~~d~P~v~~~~i~~~i~~~~~~--~~~i~~~~~~~~----~~~~~~~g~v~~~~~r~~~--~~~~~ 145 (214)
++.+..+.|+|+.++||.||+++++|+++++.+... ++++++.+..+. .+..+ +|........... ...+.
T Consensus 90 ~~~~~~~~d~ii~~~~~~P~~~~~~I~~~i~~~~~~~~d~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~ 168 (225)
T d1eyra_ 90 LETIGSNSGTVTLLQPTSPLRTGAHIREAFSLFDEKIKGSVVSACPMEHHPLKTLLQIN-NGEYAPMRHLSDLEQPRQQL 168 (225)
T ss_dssp HHHHTCCSEEEEECCTTCTTCCHHHHHHHHTTCCTTTCCCEEEEEECSSCTTSCEEECS-SSCEEESSCGGGGTSCGGGS
T ss_pred ccccccccceEEEeeccccccccccccccceeeccccccccceeecccccccccccccc-cccccccccccccccccccC
Confidence 877765678999999999999999999999987653 456666655432 22222 3333222211111 11111
Q ss_pred CcccChHHHHHHHHHHHhcCCCCCcHHHHHH---hCCCCeEEE-ecCCCCcccCCHHHHHHHHHHhh
Q 028081 146 PQVIKPDLLKKGFELVNREGLEVTDDVSIVE---HLKHPVYIT-EGSYTNIKVTTPDDLLIAERILN 208 (214)
Q Consensus 146 p~~f~~~~l~~~~~~~~~~~~~~~d~~~~~~---~~g~~i~~v-~~~~~~~~Idtp~Dl~~a~~~~~ 208 (214)
+..|.. ..++|+.....+.. ..|.++..+ .....++||||++||.+||.+++
T Consensus 169 ~~~y~~-----------~g~iy~~~~~~l~~~~~~~~~~~~~~~i~~~~~~dIdt~eDl~~ae~i~~ 224 (225)
T d1eyra_ 169 PQAFRP-----------NGAIYINDTASLIANNCFFIAPTKLYIMSHQDSIDIDTELDLQQAENILN 224 (225)
T ss_dssp CCEEEE-----------EEEEEEEEHHHHHHHTSSCCSSCEEEECCTTTTCCCCSHHHHHHHHHHHT
T ss_pred cceeee-----------cceeEEeeHHHHHHcCCccCCCeEEEEcCccceECCCCHHHHHHHHHHhC
Confidence 211110 00112222222222 134555544 45567899999999999999986
|
| >d1vica_ c.68.1.13 (A:) CMP:2-keto-3-deoxy-manno-octonic acid (CMP-KDO)synthetase {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-diphospho-sugar transferases superfamily: Nucleotide-diphospho-sugar transferases family: Cytidylytransferase domain: CMP:2-keto-3-deoxy-manno-octonic acid (CMP-KDO)synthetase species: Haemophilus influenzae [TaxId: 727]
Probab=99.83 E-value=9.4e-20 Score=141.82 Aligned_cols=205 Identities=13% Similarity=0.180 Sum_probs=123.4
Q ss_pred CCCC-CC-ceeeeeCCeehHHHHHHHHhcCCCcCeEEEEeCCCchHHHHHHHHhcCCcEEEecCCc-cHHHHHHHHHhhc
Q 028081 1 MGAN-MP-KQYLPLLGQPIALYSFYTFSRMVEVKEIVVVCDPSYSDIFEETKEKINVDLKFSLPGK-ERQDSVYSGLQEV 77 (214)
Q Consensus 1 m~~~-~~-K~l~~l~gkpli~~~i~~~~~~~~~~~iiVv~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~sv~~al~~~ 77 (214)
|||. .| |+|++|+|||||.|++++++++. +++|+|+|+++. +.+.+..+|..+.+..... +..+....+....
T Consensus 10 ~gSkRlp~Knl~~i~GkpLI~~~i~~a~~s~-i~~IiVsTd~~~---i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (255)
T d1vica_ 10 FASSRLPGKPLADIKGKPMIQHVFEKALQSG-ASRVIIATDNEN---VADVAKSFGAEVCMTSVNHNSGTERLAEVVEKL 85 (255)
T ss_dssp CCCSSSTTGGGCEETTEEHHHHHHHHHHHTT-CSEEEEEESCHH---HHHHHHHTTCEEEECCCSSCCHHHHHHHHHHHT
T ss_pred CCCCCCCCchhhhhCCcCHHHHHHHHHHHCC-CCeEEEEcCCcc---cchhhhhhccccceeeeccCCcchhhHHHHHHh
Confidence 6785 67 99999999999999999999986 899999998764 4566778887665543321 2223333343333
Q ss_pred -ccCCCeEEEEcCCCCCCCHHHHHHHHHHHHhc--CCeEEeeecccc---------EEEecCCCceeee------cCcc-
Q 028081 78 -DFNSELVCIHDSARPLVLSKDVQKVLMDALRV--GAAVLGVPAKAT---------IKEANSESFVVRT------LDRK- 138 (214)
Q Consensus 78 -~~~~~~vl~~~~d~P~v~~~~i~~~i~~~~~~--~~~i~~~~~~~~---------~~~~~~~g~v~~~------~~r~- 138 (214)
..+.+++++++||+||+++++++.+++.+... .....+....+. ....+..+.+... ..+.
T Consensus 86 ~~~~~~~iv~~~~d~p~~~~~~i~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~ 165 (255)
T d1vica_ 86 AIPDNEIIVNIQGDEPLIPPVIVRQVADNLAKFNVNMASLAVKIHDAEELFNPNAVKVLTDKDGYVLYFSRSVIPYDRDQ 165 (255)
T ss_dssp TCCTTCEEEECCTTCTTCCHHHHHHHHHHHHHHTCSEEEEEEECCCHHHHTCTTSCEEEECTTSBEEEEESSCSSCCHHH
T ss_pred hccCCceEEEEecchhhhhhhhhhhhhhhcccccccccceeeeccchhhccCccceeeeeccCCcccccccccccccchh
Confidence 23467899999999999999999999987653 223333332221 1112222322110 0000
Q ss_pred -----chhh---------hcCCcccChHHHHHHHHHHHhcCCCCCcHHHHH--HhCCCCeEEEe-cCCCCcccCCHHHHH
Q 028081 139 -----TLWE---------MQTPQVIKPDLLKKGFELVNREGLEVTDDVSIV--EHLKHPVYITE-GSYTNIKVTTPDDLL 201 (214)
Q Consensus 139 -----~~~~---------~~~p~~f~~~~l~~~~~~~~~~~~~~~d~~~~~--~~~g~~i~~v~-~~~~~~~Idtp~Dl~ 201 (214)
.... ....+.|+...+...... .....+..+..+++ ..+|.+|.++. .+...+||||++||+
T Consensus 166 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~~l~~~~~~-~~~~le~~e~le~lr~l~ng~~I~~~~~~~~~~idIDt~eDl~ 244 (255)
T d1vica_ 166 FMNLQDVQKVQLSDAYLRHIGIYAYRAGFIKQYVQW-APTQLENLEKLEQLRVLYNGERIHVELAKEVPAVGVDTAEDLE 244 (255)
T ss_dssp HTTCSCGGGCCCCTTCEEEEEEEEEEHHHHHHHHHS-CCCHHHHHHTCTTHHHHHTTCCEEEEECSSCCCCCCCSHHHHH
T ss_pred hhhccchhhcccccchheeeeeecccHHHHhhhhcc-CCChhHHHHhHHHHHHHHCCCceeEEEeCCCCCcCCCCHHHHH
Confidence 0011 112245666665543221 10000000001111 24688998654 455789999999999
Q ss_pred HHHHHhhcc
Q 028081 202 IAERILNLS 210 (214)
Q Consensus 202 ~a~~~~~~~ 210 (214)
.||.+++..
T Consensus 245 ~ae~ilkkn 253 (255)
T d1vica_ 245 KVRAILAAN 253 (255)
T ss_dssp HHHHHHHHT
T ss_pred HHHHHHHHc
Confidence 999999754
|
| >d1g97a2 c.68.1.5 (A:2-251) N-acetylglucosamine 1-phosphate uridyltransferase GlmU, N-terminal domain {Streptococcus pneumoniae [TaxId: 1313]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-diphospho-sugar transferases superfamily: Nucleotide-diphospho-sugar transferases family: UDP-glucose pyrophosphorylase domain: N-acetylglucosamine 1-phosphate uridyltransferase GlmU, N-terminal domain species: Streptococcus pneumoniae [TaxId: 1313]
Probab=99.82 E-value=9.5e-19 Score=135.00 Aligned_cols=208 Identities=14% Similarity=0.119 Sum_probs=132.5
Q ss_pred CCCCCCceeeeeCCeehHHHHHHHHhcCCCcCeEEEEeCCCchHHHHHHHHhcCCcEEEecCCccHHHHHHHHHhhcccC
Q 028081 1 MGANMPKQYLPLLGQPIALYSFYTFSRMVEVKEIVVVCDPSYSDIFEETKEKINVDLKFSLPGKERQDSVYSGLQEVDFN 80 (214)
Q Consensus 1 m~~~~~K~l~~l~gkpli~~~i~~~~~~~~~~~iiVv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sv~~al~~~~~~ 80 (214)
|+++.||+|++++|||||+|+++++.+.+ +++++|++++.. ..+...... ...........+...++..+...+...
T Consensus 15 l~~~~PK~L~~i~Gkpli~~~l~~l~~~~-~~~iivv~~~~~-~~~~~~~~~-~~~~~~~~~~~g~~~~~~~a~~~l~~~ 91 (250)
T d1g97a2 15 MKSDLPKVLHKVAGISMLEHVFRSVGAIQ-PEKTVTVVGHKA-ELVEEVLAG-QTEFVTQSEQLGTGHAVMMTEPILEGL 91 (250)
T ss_dssp GCCSSCGGGSEETTEEHHHHHHHHHGGGC-CSEEEEEECTTH-HHHHHHTTT-TSEEEECSSCCCHHHHHHTTHHHHTTC
T ss_pred CCCCCCceeeEECCeeHHHHHHHHHHHcC-CCeEEEeccccc-chhhhhccc-cccccccccccccchHHHHHHHhhhcc
Confidence 56788999999999999999999999885 899999999875 323322211 112222222233455666666666544
Q ss_pred CCeEEEEcCCCCCCCHHHHHHHHHHHHhcCC--eEEeeeccccE----EEecCCCceeeecCccc--------hhhhcCC
Q 028081 81 SELVCIHDSARPLVLSKDVQKVLMDALRVGA--AVLGVPAKATI----KEANSESFVVRTLDRKT--------LWEMQTP 146 (214)
Q Consensus 81 ~~~vl~~~~d~P~v~~~~i~~~i~~~~~~~~--~i~~~~~~~~~----~~~~~~g~v~~~~~r~~--------~~~~~~p 146 (214)
.+.+++++++.|++++..++++++.+...++ .+.+.+...+. .....++.+........ -+.....
T Consensus 92 ~~~~~~i~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~g~ 171 (250)
T d1g97a2 92 SGHTLVIAGDTPLITGESLKNLIDFHINHKNVATILTAETDNPFGYGRIVRNDNAEVLRIVEQKDATDFEKQIKEINTGT 171 (250)
T ss_dssp CSEEEEEETTCTTCCHHHHHHHHHHHHHTTCSEEEEEEECSCCTTSCEEEECTTCCEEEEECGGGCCHHHHTCCEEEEEE
T ss_pred cCcceEEecCCCccCHHHHHHHHHHHhhhccccccccceecccCCCceEEEeeceEEEEeeccccccccccccceeeeee
Confidence 5678889999999999999999998766543 33333433321 11122223332221110 0111224
Q ss_pred cccChHHHHHHHHHHHh----cCCCCCcHHHHHHhCCCCeEEEecCCCC--cccCCHHHHHHHHHHhhccc
Q 028081 147 QVIKPDLLKKGFELVNR----EGLEVTDDVSIVEHLKHPVYITEGSYTN--IKVTTPDDLLIAERILNLSS 211 (214)
Q Consensus 147 ~~f~~~~l~~~~~~~~~----~~~~~~d~~~~~~~~g~~i~~v~~~~~~--~~Idtp~Dl~~a~~~~~~~~ 211 (214)
+.|....+...+..... ..+++++....+...|.+|..+..+..+ ++||||+||+.||.+++.|.
T Consensus 172 y~f~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~V~~~~~~~~~~~~gInt~~dL~~ae~~~~~~~ 242 (250)
T d1g97a2 172 YVFDNERLFEALKNINTNNAQGEYYITDVIGIFRETGEKVGAYTLKDFDESLGVNDRVALATAESVMRRRI 242 (250)
T ss_dssp EEEEHHHHHHHHTTCCCCSTTCSCCGGGHHHHHHHTTCCEEEEECSSGGGGCCCSSHHHHHHHHHHHHHHH
T ss_pred eecchHHHHHHHHHhccCcchhhHHHhHHHHHHHHCCCeEEEEEcCCcceecCCCCHHHHHHHHHHHHHHH
Confidence 67777666655443211 1245777777788889999887765433 56999999999999998663
|
| >d1qwja_ c.68.1.13 (A:) CMP acylneuraminate synthetase {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-diphospho-sugar transferases superfamily: Nucleotide-diphospho-sugar transferases family: Cytidylytransferase domain: CMP acylneuraminate synthetase species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.82 E-value=1.8e-20 Score=143.68 Aligned_cols=193 Identities=14% Similarity=0.095 Sum_probs=122.0
Q ss_pred CCC-CCC-ceeeeeCCeehHHHHHHHHhcCCCcCeEEEEeCCCchHHHHHHHHhcCCcEEE-----ecCCccHHHHHHHH
Q 028081 1 MGA-NMP-KQYLPLLGQPIALYSFYTFSRMVEVKEIVVVCDPSYSDIFEETKEKINVDLKF-----SLPGKERQDSVYSG 73 (214)
Q Consensus 1 m~~-~~~-K~l~~l~gkpli~~~i~~~~~~~~~~~iiVv~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~sv~~a 73 (214)
||| ..| |+|++|+|+|||+|++++++++..+++|+|+|+++. +.+.+..++..+.. ..+.....+.+.++
T Consensus 12 ~~S~Rlp~K~l~~i~gkpLi~~~i~~~~ks~~id~Iivstd~~~---i~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 88 (228)
T d1qwja_ 12 GGSKGIPLKNIKRLAGVPLIGWVLRAALDAGVFQSVWVSTDHDE---IENVAKQFGAQVHRRSSETSKDSSTSLDAIVEF 88 (228)
T ss_dssp SCCSSSSCTTTSEETTEEHHHHHHHHHHHHTCCSEEEEEESCHH---HHHHHHHTTCEEEECCGGGSSTTCCHHHHHHHH
T ss_pred CCCCCCCCcchhhhCCeeHHHHHHHHHHhcCCcceEEEecchhh---hhhhhhhcCccccccccccccccchhhhhhhhc
Confidence 345 355 999999999999999999999998999999998754 56667777765433 22333457777888
Q ss_pred HhhcccCCCeEEEEcCCCCCCCHHHHHHHHHHHHhc--CCeEEeeeccccEEEecCCCc--eeee--cCccch-hhhcCC
Q 028081 74 LQEVDFNSELVCIHDSARPLVLSKDVQKVLMDALRV--GAAVLGVPAKATIKEANSESF--VVRT--LDRKTL-WEMQTP 146 (214)
Q Consensus 74 l~~~~~~~~~vl~~~~d~P~v~~~~i~~~i~~~~~~--~~~i~~~~~~~~~~~~~~~g~--v~~~--~~r~~~-~~~~~p 146 (214)
+.... ..+.++++++|+||+++++|+.+++.+... +.++++.+.....+.....+. .... ...... ++++.|
T Consensus 89 ~~~~~-~~~~iv~~~~~~P~~~~~~I~~~i~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~qd~~ 167 (228)
T d1qwja_ 89 LNYHN-EVDIVGNIQATSPCLHPTDLQKVAEMIREEGYDSVFSVVRRHQFRWSEIQKGVREVTEPLNLNPAKRPRRQDWD 167 (228)
T ss_dssp HTTCT-TCSEEEEECTTCTTCCHHHHHHHHHHHHSSCCSEEEEEEEECCCEECCCCSSTTCCCCBSSSBTTBCCCTTTSC
T ss_pred ccccc-ccceeeeecccccccCchhhhhhhhhhhccCccccccccccccccchhhhhhccccccchhhhhhhcccccccc
Confidence 77654 468889999999999999999999988754 446666655544332111110 0000 011111 111112
Q ss_pred cccChHHHHHHHHHHHhcC-CCCCcHHHHHHh---CCCCeEEE-ecCCCCcccCCHHHHHHHHHHhhcc
Q 028081 147 QVIKPDLLKKGFELVNREG-LEVTDDVSIVEH---LKHPVYIT-EGSYTNIKVTTPDDLLIAERILNLS 210 (214)
Q Consensus 147 ~~f~~~~l~~~~~~~~~~~-~~~~d~~~~~~~---~g~~i~~v-~~~~~~~~Idtp~Dl~~a~~~~~~~ 210 (214)
..|.. +| ++++.. ..+.. .|.++..+ .....++||||++||++||.++...
T Consensus 168 ~~y~~------------ng~~~~~k~-~~~~~~~~~~~k~~~~~i~~~~~idIDt~eD~~~Ae~~l~k~ 223 (228)
T d1qwja_ 168 GELYE------------NGSFYFAKR-HLIEMGYLQGGKMAYYEMRAEHSVDIDVDIDWPIAEQRVLRF 223 (228)
T ss_dssp CEEEE------------EEEEEEEEH-HHHHTTCSSCSSEEEEECCGGGCCCHHHHCSHHHHHHHHHHH
T ss_pred ceeee------------eeEEEEEeH-HHHhhCCcCCCCEEEEEcCccceECCCCHHHHHHHHHHHHHh
Confidence 21110 11 222222 12221 35566654 3445789999999999999998754
|
| >d2dpwa1 c.68.1.19 (A:1-231) Uncharacterized protein TTHA0179 {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-diphospho-sugar transferases superfamily: Nucleotide-diphospho-sugar transferases family: TTHA0179-like domain: Uncharacterized protein TTHA0179 species: Thermus thermophilus [TaxId: 274]
Probab=99.78 E-value=1.2e-18 Score=133.84 Aligned_cols=101 Identities=16% Similarity=0.149 Sum_probs=82.0
Q ss_pred CCceeeeeCCeehHHHHHHHHhcCCCcCeEEEEeCCCchHHHHHHHHhcCCcEEEecCCccHHHHHHHHHhhcccCCCeE
Q 028081 5 MPKQYLPLLGQPIALYSFYTFSRMVEVKEIVVVCDPSYSDIFEETKEKINVDLKFSLPGKERQDSVYSGLQEVDFNSELV 84 (214)
Q Consensus 5 ~~K~l~~l~gkpli~~~i~~~~~~~~~~~iiVv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sv~~al~~~~~~~~~v 84 (214)
.||+|++++|||||+|+++++.+++ +++|+|+++++... .......++.++..++..|++++. +.+
T Consensus 22 ~~K~L~~i~Gkpli~~~~~~l~~~~-~~~vvv~~~~~~~~----------~~~~~~~~~~~~~~~v~~al~~~~---~~~ 87 (231)
T d2dpwa1 22 GSKALVPYRGRPMVEWVLEALYAAG-LSPVYVGENPGLVP----------APALTLPDRGGLLENLEQALEHVE---GRV 87 (231)
T ss_dssp SBGGGSEETTEETHHHHHHHHHHTT-CEEEEESCCSSCSS----------CCSEEECCCSSHHHHHHHHHHTCC---SEE
T ss_pred CCceeeEECCeeHHHHHHHHHHhcC-CCeEEeeeeccccc----------eeeeecccchHHHHHHHHHHHhhc---Cce
Confidence 4699999999999999999999986 78999998876421 112344556678899999999875 678
Q ss_pred EEEcCCCCCCCHHHHHHHHHHHHhcCCeEEeeecc
Q 028081 85 CIHDSARPLVLSKDVQKVLMDALRVGAAVLGVPAK 119 (214)
Q Consensus 85 l~~~~d~P~v~~~~i~~~i~~~~~~~~~i~~~~~~ 119 (214)
++++||+||++++.|+.+++.+.+.++++++.+..
T Consensus 88 lv~~~D~P~i~~~~i~~l~~~~~~~~~~~~~~~~~ 122 (231)
T d2dpwa1 88 LVATGDIPHLTEEAVRFVLDKAPEAALVYPIVPKE 122 (231)
T ss_dssp EEEETTCTTCCHHHHHHHHHHCCSCSEEEEEEEHH
T ss_pred EEeeCCCccCCHHHHHHHHHHhhhcCceEEEEecc
Confidence 99999999999999999999877667677666654
|
| >d1e5ka_ c.68.1.8 (A:) Molybdenum cofactor biosynthesis protein MobA {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-diphospho-sugar transferases superfamily: Nucleotide-diphospho-sugar transferases family: Molybdenum cofactor biosynthesis protein MobA domain: Molybdenum cofactor biosynthesis protein MobA species: Escherichia coli [TaxId: 562]
Probab=99.70 E-value=1.1e-16 Score=118.77 Aligned_cols=97 Identities=13% Similarity=0.104 Sum_probs=72.2
Q ss_pred CCCCCCceeeeeCCeehHHHHHHHHhcCCCcCeEEEEeCCCchHHHHHHHHhcCCcEEE--ecCCccHHHHHHHHHhhcc
Q 028081 1 MGANMPKQYLPLLGQPIALYSFYTFSRMVEVKEIVVVCDPSYSDIFEETKEKINVDLKF--SLPGKERQDSVYSGLQEVD 78 (214)
Q Consensus 1 m~~~~~K~l~~l~gkpli~~~i~~~~~~~~~~~iiVv~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~sv~~al~~~~ 78 (214)
||+ .||+|++++|+|||+|++++++.. +++|+|+++... + ....++..+.. ..++.++..++..++....
T Consensus 17 mG~-~~K~ll~~~g~~ll~~~l~~l~~~--~~~ivv~~~~~~-~----~~~~~~~~v~~d~~~~~~~~~~g~~~~~~~~~ 88 (188)
T d1e5ka_ 17 MGG-VDKGLLELNGKPLWQHVADALMTQ--LSHVVVNANRHQ-E----IYQASGLKVIEDSLADYPGPLAGMLSVMQQEA 88 (188)
T ss_dssp SCS-SCGGGSEETTEEHHHHHHHHHHHH--CSCEEEECSSSH-H----HHHTTSCCEECCCTTCCCSHHHHHHHHHHHCC
T ss_pred CCC-CCcccCEECCEehhHHHHhhhccc--ccccccccCccH-H----hhhhcCCCccccccccccchhHHHHHHHHhcc
Confidence 553 479999999999999999999864 578888887653 2 12233433332 2344456777777877654
Q ss_pred cCCCeEEEEcCCCCCCCHHHHHHHHHHHH
Q 028081 79 FNSELVCIHDSARPLVLSKDVQKVLMDAL 107 (214)
Q Consensus 79 ~~~~~vl~~~~d~P~v~~~~i~~~i~~~~ 107 (214)
.++++++.||+|++++++++++++...
T Consensus 89 --~~~vlv~~~D~P~i~~~~i~~L~~~~~ 115 (188)
T d1e5ka_ 89 --GEWFLFCPCDTPYIPPDLAARLNHQRK 115 (188)
T ss_dssp --SSEEEEEETTCTTCCTTHHHHHHHTCT
T ss_pred --cceEEEeccCCCCCCHHHHHHHHHhcc
Confidence 689999999999999999999987643
|
| >d1mc3a_ c.68.1.6 (A:) RffH {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-diphospho-sugar transferases superfamily: Nucleotide-diphospho-sugar transferases family: glucose-1-phosphate thymidylyltransferase domain: RffH species: Escherichia coli [TaxId: 562]
Probab=99.50 E-value=6.3e-14 Score=110.43 Aligned_cols=200 Identities=14% Similarity=0.197 Sum_probs=126.6
Q ss_pred CCCCceeeeeCCeehHHHHHHHHhcCCCcCeEEEEeCCCchHHHHHHHH---hcCCcEEEecCCc--cHHHHHHHHHhhc
Q 028081 3 ANMPKQYLPLLGQPIALYSFYTFSRMVEVKEIVVVCDPSYSDIFEETKE---KINVDLKFSLPGK--ERQDSVYSGLQEV 77 (214)
Q Consensus 3 ~~~~K~l~~l~gkpli~~~i~~~~~~~~~~~iiVv~~~~~~~~~~~~~~---~~~~~~~~~~~~~--~~~~sv~~al~~~ 77 (214)
...||+|+|++|||||+|+++.+..++ +++|+|++++...+.++++.. .+|.++.++.+.. +..+++..|.+.+
T Consensus 20 ~~~pK~llpi~~kp~i~~~l~~l~~~g-i~~i~iv~~~~~~~~~~~~~~~g~~~gi~I~y~~Q~~plGta~Ai~~a~~fi 98 (291)
T d1mc3a_ 20 RGVSKQLLPIYDKPMIYYPLSVLMLAG-IREILIITTPEDKGYFQRLLGDGSEFGIQLEYAEQPSPDGLAQAFIIGETFL 98 (291)
T ss_dssp TTSCGGGSEETTEETTHHHHHHHHHTT-CCEEEEEECTTTHHHHHHHHTTSGGGTCEEEEEECSSCCCSTHHHHHTHHHH
T ss_pred cCCCccccEECCEehHHHHHHHHHHcC-CCEEEEEeCcccHHHHHHHhCchHhhCcEEEEEECCCCCchHHHHHHHHHHh
Confidence 468999999999999999999999986 999999998876555666553 4566776654422 3367788887777
Q ss_pred ccCCCeEEEEcCCCCCCCHHHHHHHHHHHHh--cCCeEEeeeccccE----EEecCCCceeeecCc-----cchhhhcCC
Q 028081 78 DFNSELVCIHDSARPLVLSKDVQKVLMDALR--VGAAVLGVPAKATI----KEANSESFVVRTLDR-----KTLWEMQTP 146 (214)
Q Consensus 78 ~~~~~~vl~~~~d~P~v~~~~i~~~i~~~~~--~~~~i~~~~~~~~~----~~~~~~g~v~~~~~r-----~~~~~~~~p 146 (214)
. +.+.++++ +|-.|...+ +..+++.+.. .++.+.+.++.++. ...+++|.+..+.+. +++ ..-.-
T Consensus 99 ~-~~~~~lvl-gddi~~~~~-~~~~l~~~~~~~~~atI~~~~V~dP~~yGVve~d~~g~i~~i~EKP~~p~Sn~-a~~Gi 174 (291)
T d1mc3a_ 99 N-GEPSCLVL-GDNIFFGQG-FSPKLRHVAARTEGATVFGYQVMDPERFGVVEFDDNFRAISLEEKPKQPKSNW-AVTGL 174 (291)
T ss_dssp T-TSCEEEEE-TTEEEECSS-CHHHHHHHTTCCSSEEEEEEECSCCSSSBBCEEETTEEEEECCBSCSSCSCSE-EEEEE
T ss_pred C-CCCeEEEE-CCCcccCcC-HHHHHHHHHhCcCCcEEEEEECCCcccCCCceeccCcceeEEEECCCCCCCCe-EEEEE
Confidence 5 23455555 555565543 4566665543 24456777777762 223555666655422 221 11123
Q ss_pred cccChHHHHHHHHHHH---hcCCCCCcHHHHHHhCCCCeEEEecC-CCCcccCCHHHHHHHHHHhh
Q 028081 147 QVIKPDLLKKGFELVN---REGLEVTDDVSIVEHLKHPVYITEGS-YTNIKVTTPDDLLIAERILN 208 (214)
Q Consensus 147 ~~f~~~~l~~~~~~~~---~~~~~~~d~~~~~~~~g~~i~~v~~~-~~~~~Idtp~Dl~~a~~~~~ 208 (214)
|.|....+..+ .... +.++++||....+.+.+.......+. ..|+|+.|+++|..|..+++
T Consensus 175 Y~f~~~v~~~~-~~lk~s~rgE~EItdl~~~~l~~~~~~~~~~~~g~~W~D~Gt~~~l~~a~~~v~ 239 (291)
T d1mc3a_ 175 YFYDSKVVEYA-KQVKPSERGELEITSINQMYLEAGNLTVELLGRGFAWLDTGTHDSLIEASTFVQ 239 (291)
T ss_dssp EECCTHHHHHH-HSCCCCSSSSCCHHHHHHHHHHTTCEEEEECCTTCEEEECCSHHHHHHHHHHHH
T ss_pred EEeChHHHHHH-hcCCCCCCCceeehHHHHHHHHcCCceEEEecCCCEEEeCCCHHHHHHHHHHHH
Confidence 67776555433 3221 22367787666555544322223343 45999999999999887653
|
| >d1fxoa_ c.68.1.6 (A:) RmlA (RfbA) {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-diphospho-sugar transferases superfamily: Nucleotide-diphospho-sugar transferases family: glucose-1-phosphate thymidylyltransferase domain: RmlA (RfbA) species: Pseudomonas aeruginosa [TaxId: 287]
Probab=99.50 E-value=1.5e-13 Score=108.47 Aligned_cols=198 Identities=17% Similarity=0.231 Sum_probs=127.2
Q ss_pred CCCceeeeeCCeehHHHHHHHHhcCCCcCeEEEEeCCCchHHHHHHHH---hcCCcEEEecC--CccHHHHHHHHHhhcc
Q 028081 4 NMPKQYLPLLGQPIALYSFYTFSRMVEVKEIVVVCDPSYSDIFEETKE---KINVDLKFSLP--GKERQDSVYSGLQEVD 78 (214)
Q Consensus 4 ~~~K~l~~l~gkpli~~~i~~~~~~~~~~~iiVv~~~~~~~~~~~~~~---~~~~~~~~~~~--~~~~~~sv~~al~~~~ 78 (214)
..||+|+|++|||||.|+++.+..++ +++|+|++++...+.+++... .++.++.++.+ ..+..+++..|.+.+.
T Consensus 21 ~~pKpllpi~gkPiI~~~l~~l~~~G-i~ei~ii~~~~~~~~i~~~~~~~~~~g~~I~y~~q~~~~Gta~ai~~a~~~i~ 99 (292)
T d1fxoa_ 21 AISKQLLPVYDKPMIYYPLSTLMLAG-IREILIISTPQDTPRFQQLLGDGSNWGLDLQYAVQPSPDGLAQAFLIGESFIG 99 (292)
T ss_dssp HSCGGGSEETTEETTHHHHHHHHHTT-CCEEEEEECTTTHHHHHHHHTTSGGGTCEEEEEECSSCCCGGGHHHHTHHHHT
T ss_pred CCCcccCEECCEehHHHHHHHHHHCC-CCEEEEEeCcCCHHHHHHHhccccccCeEEEEccCCCCCcHHHHHHhhhhhcC
Confidence 47999999999999999999999885 899988887665455666553 35666665433 2234677888888776
Q ss_pred cCCCeEEEEcCCCCCCCHHHHHHHHHHHHhcC--CeEEeeecccc----EEEecCCCceeeecC-----ccchhhhcCCc
Q 028081 79 FNSELVCIHDSARPLVLSKDVQKVLMDALRVG--AAVLGVPAKAT----IKEANSESFVVRTLD-----RKTLWEMQTPQ 147 (214)
Q Consensus 79 ~~~~~vl~~~~d~P~v~~~~i~~~i~~~~~~~--~~i~~~~~~~~----~~~~~~~g~v~~~~~-----r~~~~~~~~p~ 147 (214)
+.+.++++.+|. + ....+..+++.+.+.+ +.+.+.++.++ +..++.+|.+..+.+ .+++. +-.-|
T Consensus 100 -~~~~~lil~dD~-~-~~~dl~~ll~~h~~~~~~~~i~~~~V~~p~~yGV~~~d~~~ki~~~~EKP~~p~Snla-~~G~Y 175 (292)
T d1fxoa_ 100 -NDLSALVLGDNL-Y-YGHDFHELLGSASQRQTGASVFAYHVLDPERYGVVEFDQGGKAISLEEKPLEPKSNYA-VTGLY 175 (292)
T ss_dssp -TSEEEEEETTEE-E-ECTTHHHHHHHHHTCCSSEEEEEEECSCGGGSEEEEECTTSCEEEEEESCSSCSSSEE-EEEEE
T ss_pred -CCceEEEEcccc-c-cCcCHHHHHHHHHhCCCCcEEEEEECCCHHHCeEEEEcCCCCEeEEEECCCCCCCCcE-EEEEE
Confidence 335667776663 3 3445888998886643 45667777765 233455677665443 22221 11236
Q ss_pred ccChHHHHHHHHHHH---hcCCCCCcHHHHHHhCCCCeEE-EecC-CCCcccCCHHHHHHHHHHhh
Q 028081 148 VIKPDLLKKGFELVN---REGLEVTDDVSIVEHLKHPVYI-TEGS-YTNIKVTTPDDLLIAERILN 208 (214)
Q Consensus 148 ~f~~~~l~~~~~~~~---~~~~~~~d~~~~~~~~g~~i~~-v~~~-~~~~~Idtp~Dl~~a~~~~~ 208 (214)
.|....+. ..+... +.++++||....+...+ ++.+ ..+. ..|+|+.|++||..|..++.
T Consensus 176 ~f~~~~~~-~~~~l~~s~rgE~eitD~~~~~l~~~-~~~~~~~~~~~~W~D~Gt~~~l~~a~~~v~ 239 (292)
T d1fxoa_ 176 FYDQQVVD-IARDLKPSPRGELEITDVNRAYLERG-QLSVEIMGRGYAWLDTGTHDSLLEAGQFIA 239 (292)
T ss_dssp EECTTHHH-HHHHCCCCTTSSCCHHHHHHHHHHTT-CEEEEECCTTSEEEECCSHHHHHHHHHHHH
T ss_pred EEChHHHH-HHHhCCCCCCCchhhHHHHHHHHHcC-CeEEEEeCCCCEEEeCCCHHHHHHHHHHHH
Confidence 77765543 233321 22367788665555554 3332 2333 35999999999999987654
|
| >d1jyka_ c.68.1.13 (A:) CTP:phosphocholine cytidylytransferase LicC {Streptococcus pneumoniae [TaxId: 1313]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-diphospho-sugar transferases superfamily: Nucleotide-diphospho-sugar transferases family: Cytidylytransferase domain: CTP:phosphocholine cytidylytransferase LicC species: Streptococcus pneumoniae [TaxId: 1313]
Probab=99.47 E-value=2.1e-13 Score=103.43 Aligned_cols=193 Identities=16% Similarity=0.141 Sum_probs=104.5
Q ss_pred CCCCceeeeeCCeehHHHHHHHHhcCCCcCeEEEEeCCCchHHHHHHHHhcCCcEEEecCC--ccHHHHHHHHHhhcccC
Q 028081 3 ANMPKQYLPLLGQPIALYSFYTFSRMVEVKEIVVVCDPSYSDIFEETKEKINVDLKFSLPG--KERQDSVYSGLQEVDFN 80 (214)
Q Consensus 3 ~~~~K~l~~l~gkpli~~~i~~~~~~~~~~~iiVv~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~sv~~al~~~~~~ 80 (214)
...||+|++++|||||+|+++.+...+ +++|+|++++.. +.++.....++.++.+.... .+..+|++.|.+.+.
T Consensus 22 ~~~pK~ll~i~gkpli~~~i~~l~~~g-~~~i~iv~g~~~-e~i~~~~~~~~i~i~~~~~~~~~Gt~~sl~~a~~~l~-- 97 (229)
T d1jyka_ 22 ENTPKALVQVNQKPLIEYQIEFLKEKG-INDIIIIVGYLK-EQFDYLKEKYGVRLVFNDKYADYNNFYSLYLVKEELA-- 97 (229)
T ss_dssp SSSCGGGCEETTEEHHHHHHHHHHHTT-CCCEEEEECTTG-GGGTHHHHHHCCEEEECTTTTTSCTHHHHHTTGGGCT--
T ss_pred cCCCcceeEECCEEHHHHHHHHHHHhC-Ccccccccccch-hhhhhhhhhccccccccccccccccccccccchhhhc--
Confidence 357999999999999999999999885 899999999764 44555566677666554432 234788888877764
Q ss_pred CCeEEEEcCCCCCCCHHHHHHHHHHHHhcCCeEEeeeccc----cEEEecCCCceeeecCcc-chhhhcCCcccChHHHH
Q 028081 81 SELVCIHDSARPLVLSKDVQKVLMDALRVGAAVLGVPAKA----TIKEANSESFVVRTLDRK-TLWEMQTPQVIKPDLLK 155 (214)
Q Consensus 81 ~~~vl~~~~d~P~v~~~~i~~~i~~~~~~~~~i~~~~~~~----~~~~~~~~g~v~~~~~r~-~~~~~~~p~~f~~~~l~ 155 (214)
.+ ++++ +|..+... .+... . ..+...++...+ .....++++.+....... .-+.....+.|......
T Consensus 98 ~~-~ii~-~dd~~~~~-~~~~~---~--~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~gi~~~~~~~~~ 169 (229)
T d1jyka_ 98 NS-YVID-ADNYLFKN-MFRND---L--TRSTYFSVYREDCTNEWFLVYGDDYKVQDIIVDSKAGRILSGVSFWDAPTAE 169 (229)
T ss_dssp TE-EEEE-TTEEESSC-CCCSC---C--CSEEEEECEESSCSSCCEEEECTTCBEEEEECCCSSEEBCCSEEEECHHHHH
T ss_pred cc-cccc-cccccccc-chhhh---h--hccccceeeeeeccccceeEEccCCceeeEEEecccceEEEEEEEEcHHHHH
Confidence 23 3444 44444322 11111 1 122222222222 122234455555443211 11111122445544332
Q ss_pred HH---HHHHHhcC--C-CCCcHHHHHHh-CCCCeEEEecC-CCCcccCCHHHHHHHHHHhh
Q 028081 156 KG---FELVNREG--L-EVTDDVSIVEH-LKHPVYITEGS-YTNIKVTTPDDLLIAERILN 208 (214)
Q Consensus 156 ~~---~~~~~~~~--~-~~~d~~~~~~~-~g~~i~~v~~~-~~~~~Idtp~Dl~~a~~~~~ 208 (214)
.+ +.....++ . .+.+.. .... ....+.+.... ..+++||||+||..|+.+++
T Consensus 170 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~~~~~~~~~~~I~t~edl~~a~~~~K 229 (229)
T d1jyka_ 170 KIVSFIDKAYVSGEFVDLYWDNM-VKDNIKELDVYVEELEGNSIYEIDSVQDYRKLEEILK 229 (229)
T ss_dssp HHHHHHHHHHTTTCCTTCCTTHH-HHTTGGGCCEEEEECCTTSEEECCSHHHHHHHHHHHC
T ss_pred HHHHHHHHhhcccccchhHHHHH-HHHHHHhCCceEEEecCCCEEecCCHHHHHHHHHhhC
Confidence 22 22221111 1 122221 1111 23455555444 35899999999999999874
|
| >d1lvwa_ c.68.1.6 (A:) RmlA (RfbA) {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-diphospho-sugar transferases superfamily: Nucleotide-diphospho-sugar transferases family: glucose-1-phosphate thymidylyltransferase domain: RmlA (RfbA) species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]
Probab=99.46 E-value=8.3e-13 Score=104.51 Aligned_cols=200 Identities=16% Similarity=0.258 Sum_probs=122.0
Q ss_pred CCCCceeeeeCCeehHHHHHHHHhcCCCcCeEEEEeCCCchHHHHHHHH---hcCCcEEEecC--CccHHHHHHHHHhhc
Q 028081 3 ANMPKQYLPLLGQPIALYSFYTFSRMVEVKEIVVVCDPSYSDIFEETKE---KINVDLKFSLP--GKERQDSVYSGLQEV 77 (214)
Q Consensus 3 ~~~~K~l~~l~gkpli~~~i~~~~~~~~~~~iiVv~~~~~~~~~~~~~~---~~~~~~~~~~~--~~~~~~sv~~al~~~ 77 (214)
.+.||||++++|||||+|+++.+...+ +++++|++++...+.+++... .++.++.++.. +.+..+|+..|...+
T Consensus 22 ~~~PK~ll~i~~kpii~~~l~~l~~~g-~~~i~Iv~~~~~~~~~~~~~~~~~~~~~~i~~v~e~~~~gta~Al~~a~~~l 100 (295)
T d1lvwa_ 22 RAVSKQLLPIYDKPMIYYPLSVLMLAG-IRDILIISTPRDLPLYRDLLGDGSQFGVRFSYRVQEEPRGIADAFIVGKDFI 100 (295)
T ss_dssp TSSCGGGSEETTEETTHHHHHHHHHTT-CCEEEEEECTTTHHHHHHHHTTSGGGTSEEEEEECSSCCCGGGHHHHTHHHH
T ss_pred CCCCcccCeECCEEHHHHHHHHHHHCC-CCeEEEEeCcccHHHHHHHhccchhcCCEEEEEECCCCCCHHHHHHHHHHHc
Confidence 467999999999999999999999875 899999999876555666553 34555555432 233467788888887
Q ss_pred ccCCCeEEEEcCCCCCCCHHHHHHHHHHHHhc--CCeEEeeecccc----EEEecCCCceeeecCc-----cchhhhcCC
Q 028081 78 DFNSELVCIHDSARPLVLSKDVQKVLMDALRV--GAAVLGVPAKAT----IKEANSESFVVRTLDR-----KTLWEMQTP 146 (214)
Q Consensus 78 ~~~~~~vl~~~~d~P~v~~~~i~~~i~~~~~~--~~~i~~~~~~~~----~~~~~~~g~v~~~~~r-----~~~~~~~~p 146 (214)
. +.+.++++ +|-+++... +..++..+... ++.+.+.+..++ ....++++.+....+. +++ ....-
T Consensus 101 ~-~~~~~li~-~~d~~~~~~-~~~~~~~~~~~~~~~ti~~~~~~~~~~yG~i~~~~~~~v~~~~EKp~~~~s~~-~~~Gi 176 (295)
T d1lvwa_ 101 G-DSKVALVL-GDNVFYGHR-FSEILRRAASLEDGAVIFGYYVRDPRPFGVVEFDSEGRVISIEEKPSRPKSNY-VVPGL 176 (295)
T ss_dssp T-TSCEEEEE-TTCCEECTT-HHHHHHHHHTCCSSEEEEEEECSCCTTSEEEEECTTSBEEEEEESCSSCSCSE-ECCSE
T ss_pred C-CCCEEEEe-CCcceechh-HHHHHHHHHhCCCCeEEEEEEcCCCccccEEEECCCCcEEEEeecccCcccce-eecce
Confidence 6 33556665 555777654 45555555443 334556666554 2223445666544321 111 11123
Q ss_pred cccChHHHHHHHHHHH---hcCCCCCcHHHHHHhCC-CCeEEEecCCCCcccCCHHHHHHHHHHhh
Q 028081 147 QVIKPDLLKKGFELVN---REGLEVTDDVSIVEHLK-HPVYITEGSYTNIKVTTPDDLLIAERILN 208 (214)
Q Consensus 147 ~~f~~~~l~~~~~~~~---~~~~~~~d~~~~~~~~g-~~i~~v~~~~~~~~Idtp~Dl~~a~~~~~ 208 (214)
+.|..+.+. ...... ...+++++....+...+ .++.....+..++|++|++||..++..++
T Consensus 177 y~~n~~if~-~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~w~Digt~~~l~~~s~~i~ 241 (295)
T d1lvwa_ 177 YFYDNQVVE-IARRIEPSDRGELEITSVNEEYLRMGKLRVELMGRGMAWLDTGTHDGLLEASSFIE 241 (295)
T ss_dssp EEECTTHHH-HHHHCCCCTTSCCCHHHHHHHHHHTTCEEEEEECTTCEECCCSSHHHHHHHHHHHH
T ss_pred EEECHHHHH-HHHhcCCCcCCCeeccchHHHHHHhCCCeEEEcCCCcEEeCCCChHHHHHHHHHHH
Confidence 566666543 222221 11244555544444444 34555555667899999999999876653
|
| >d1yp2a2 c.68.1.6 (A:10-316) Glucose-1-phosphate adenylyltransferase small subunit, catalytic domain {Potato (Solanum tuberosum) [TaxId: 4113]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-diphospho-sugar transferases superfamily: Nucleotide-diphospho-sugar transferases family: glucose-1-phosphate thymidylyltransferase domain: Glucose-1-phosphate adenylyltransferase small subunit, catalytic domain species: Potato (Solanum tuberosum) [TaxId: 4113]
Probab=99.37 E-value=2.8e-11 Score=95.62 Aligned_cols=203 Identities=11% Similarity=-0.006 Sum_probs=119.9
Q ss_pred CCCCceeeeeCC-eehHHHHHHHHhcCCCcCeEEEEeCCCchHHHHHHHHhcCC----------cEEEecC--------C
Q 028081 3 ANMPKQYLPLLG-QPIALYSFYTFSRMVEVKEIVVVCDPSYSDIFEETKEKINV----------DLKFSLP--------G 63 (214)
Q Consensus 3 ~~~~K~l~~l~g-kpli~~~i~~~~~~~~~~~iiVv~~~~~~~~~~~~~~~~~~----------~~~~~~~--------~ 63 (214)
.++||+|++++| +|||+|+++.+.+++ +++|+|++++........+...+.. ...+... .
T Consensus 30 ~~~PK~llpv~g~~plI~~~l~~l~~~g-i~~I~Iv~~~~~~~i~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 108 (307)
T d1yp2a2 30 KKRAKPAVPLGANYRLIDIPVSNCLNSN-ISKIYVLTQFNSASLNRHLSRAYASNMGGYKNEGFVEVLAAQQSPENPDWF 108 (307)
T ss_dssp TTSCGGGCEETTTEETTHHHHHHHHHTT-CCEEEEEESCCCHHHHHHHHHHCC--------CCEEEEEESCSSTTSCCCC
T ss_pred cCCCcceEEECCCCCHHHHHHHHHHHcC-CCEEEEEeccccccchhhhhcccccccccccccccceeeceeeeccccccc
Confidence 468999999988 599999999999885 9999999998863322222222211 1112111 1
Q ss_pred ccHHHHHHHHHhhccc-CCCeEEEEcCCCCCCCHHHHHHHHHHHHhcCC--eEEeeeccc------cEEEecCCCceeee
Q 028081 64 KERQDSVYSGLQEVDF-NSELVCIHDSARPLVLSKDVQKVLMDALRVGA--AVLGVPAKA------TIKEANSESFVVRT 134 (214)
Q Consensus 64 ~~~~~sv~~al~~~~~-~~~~vl~~~~d~P~v~~~~i~~~i~~~~~~~~--~i~~~~~~~------~~~~~~~~g~v~~~ 134 (214)
.+..+++..++..+.+ ..+.++++.||.-+ .. .+..+++.+...++ .+......+ .+..++++|.+...
T Consensus 109 ~g~~~ai~~~~~~i~~~~~~~~iv~~~D~~~-~~-d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gvv~~d~~~~v~~~ 186 (307)
T d1yp2a2 109 QGTADAVRQYLWLFEEHTVLEYLILAGDHLY-RM-DYEKFIQAHRETDADITVAALPMDEKRATAFGLMKIDEEGRIIEF 186 (307)
T ss_dssp CSHHHHHHHTHHHHTTSCCSEEEEECSCEEC-CC-CHHHHHHHHHHTTCSEEEEEEEECHHHHTTSEEEEECTTSBEEEE
T ss_pred cchhHHHHHhHHhhhccccceEEEecCccee-cc-chhhhhhhhhhccccceEEEEecccccccccceEEECCCCcEEEE
Confidence 2346778888877753 23568889999844 33 34667776655433 222222211 12334556666543
Q ss_pred cCccc------------hh------h-------hcCCcccChHHHHHHHHHHHhcCC-CCCcHHHHHHhCCCCeEEEecC
Q 028081 135 LDRKT------------LW------E-------MQTPQVIKPDLLKKGFELVNREGL-EVTDDVSIVEHLKHPVYITEGS 188 (214)
Q Consensus 135 ~~r~~------------~~------~-------~~~p~~f~~~~l~~~~~~~~~~~~-~~~d~~~~~~~~g~~i~~v~~~ 188 (214)
.+... .. . ...-+.|....+............ +.+|....+...|.++..++.+
T Consensus 187 ~Ek~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~giyi~~~~~l~~~~~~~~~~~~~~~~d~i~~li~~g~~v~~~~~~ 266 (307)
T d1yp2a2 187 AEKPQGEQLQAMKVDTTILGLDDKRAKEMPFIASMGIYVISKDVMLNLLRDKFPGANDFGSEVIPGATSLGMRVQAYLYD 266 (307)
T ss_dssp EESCCHHHHHHTCCCGGGGSCCHHHHHHCCEEEEEEEEEEEHHHHHHHHHTTCTTCCCTTTTHHHHHHHTTCCEEEEECC
T ss_pred EECCCCcccccccccccccccccchhhcccchhhCceEEECHHHHHHHhhhccccccchHHHHHHHHHHCCCcEEEEEeC
Confidence 22100 00 0 001145666666555443221112 3455555556678889888877
Q ss_pred CCCcccCCHHHHHHHH-HHhh
Q 028081 189 YTNIKVTTPDDLLIAE-RILN 208 (214)
Q Consensus 189 ~~~~~Idtp~Dl~~a~-~~~~ 208 (214)
..|.||+||+||..|+ .+++
T Consensus 267 g~W~Digt~~~~~~a~~~ll~ 287 (307)
T d1yp2a2 267 GYWEDIGTIEAFYNANLGITK 287 (307)
T ss_dssp SCCEECSSHHHHHHHHHGGGC
T ss_pred CeEEECcCHHHHHHHHHHHhc
Confidence 7899999999999997 4444
|
| >d1tzfa_ c.68.1.13 (A:) Glucose-1-phosphate cytidylyltransferase RfbF {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-diphospho-sugar transferases superfamily: Nucleotide-diphospho-sugar transferases family: Cytidylytransferase domain: Glucose-1-phosphate cytidylyltransferase RfbF species: Salmonella typhimurium [TaxId: 90371]
Probab=99.25 E-value=4.3e-11 Score=91.76 Aligned_cols=199 Identities=10% Similarity=0.036 Sum_probs=102.3
Q ss_pred CCCCceeeeeCCeehHHHHHHHHhcCCCcCeEEEEeCCCchHHHHHHHHhc---CC---------------------cEE
Q 028081 3 ANMPKQYLPLLGQPIALYSFYTFSRMVEVKEIVVVCDPSYSDIFEETKEKI---NV---------------------DLK 58 (214)
Q Consensus 3 ~~~~K~l~~l~gkpli~~~i~~~~~~~~~~~iiVv~~~~~~~~~~~~~~~~---~~---------------------~~~ 58 (214)
.+.||+|++++|+|||+|+++.+.+++ +++|+|++++.. +.+++...+. .. .+.
T Consensus 21 ~~~PK~Ll~i~gkplI~~~i~~l~~~g-i~~i~iv~gy~~-~~i~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~ 98 (259)
T d1tzfa_ 21 IVKPKPMVEIGGKPILWHIMKMYSVHG-IKDFIICCGYKG-YVIKEYFANYFLHMSDVTFHMAENRMEVHHKRVEPWNVT 98 (259)
T ss_dssp -CCCGGGCEETTEEHHHHHHHHHHHTT-CCEEEEEECTTH-HHHHHHHHTHHHHHSCEEEEGGGTEEEETTCCCCCCEEE
T ss_pred CCCCccceEECCEEHHHHHHHHHHHcC-CCeeeeccchhH-HHHHHHHhcchhccccccchhccccchhhhcccccccee
Confidence 468999999999999999999999985 899999999986 4455443210 00 111
Q ss_pred Eec-C-CccHHHHHHHHHhhcccCCCeEEEEcCCCCCCCHHHHHHHHHHHHhcCCeEEeeeccc--cEEEe-cCCCceee
Q 028081 59 FSL-P-GKERQDSVYSGLQEVDFNSELVCIHDSARPLVLSKDVQKVLMDALRVGAAVLGVPAKA--TIKEA-NSESFVVR 133 (214)
Q Consensus 59 ~~~-~-~~~~~~sv~~al~~~~~~~~~vl~~~~d~P~v~~~~i~~~i~~~~~~~~~i~~~~~~~--~~~~~-~~~g~v~~ 133 (214)
++. + .......+..+...+. ..+.++++.+|.-. +. ....+++.........+.....+ ..... ...+.+..
T Consensus 99 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~d~~~-~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 175 (259)
T d1tzfa_ 99 LVDTGDSSMTGGRLKRVAEYVK-DDEAFLFTYGDGVA-DL-DIKATIDFHKAHGKKATLTATFPPGRFGALDIQAGQVRS 175 (259)
T ss_dssp EEECCSSCCHHHHHHHTGGGTT-TSSCEEEEETTEEE-CC-CHHHHHHHHHHHCCSEEEEEECCCCCSEEEEEETTEEEE
T ss_pred EEeccccccccchhhhhhhhcc-CCCceEEecccccc-cc-chhhhhhhhcccccceeeccccccccCCceecccceEEe
Confidence 222 2 1122344444444443 23556777777632 22 23345544444333222222221 11110 11122221
Q ss_pred ecCc----cchhhhcCCcccChHHHHHHHHHHHhcCC-CCCcHHHHHHhCCCCeEEEecCCCCcccCCHHHHHHHHHHhh
Q 028081 134 TLDR----KTLWEMQTPQVIKPDLLKKGFELVNREGL-EVTDDVSIVEHLKHPVYITEGSYTNIKVTTPDDLLIAERILN 208 (214)
Q Consensus 134 ~~~r----~~~~~~~~p~~f~~~~l~~~~~~~~~~~~-~~~d~~~~~~~~g~~i~~v~~~~~~~~Idtp~Dl~~a~~~~~ 208 (214)
.... +.+ ..-.-+.|+...+ ..+. .... ...+....+.+.| ++.....+..|.+||||+|+..++++++
T Consensus 176 ~~~~~~~~~~~-~~~G~y~~~~~~~-~~i~---~~~~~~~~~~l~~l~~~~-~v~~~~~~g~W~didt~~d~~~~~~~~~ 249 (259)
T d1tzfa_ 176 FQEKPKGDGAM-INGGFFVLNPSVI-DLID---NDATTWEQEPLMTLAQQG-ELMAFEHPGFWQPMDTLRDKVYLEGLWE 249 (259)
T ss_dssp EEESCSCCSCC-EECCCEEECGGGG-GGCC---STTCCTTTHHHHHHHHTT-CEEEEEECSCEEECCSHHHHHHHHHHHH
T ss_pred eeeccccceee-ecceeccccchhh-hhcc---cCcCccHHHHHHHHHhcC-CeEEEEeCCEEEECCCHHHHHHHHHHHH
Confidence 1110 000 0001133333221 1111 1122 2344444444555 6776665667899999999999999988
Q ss_pred cccC
Q 028081 209 LSSE 212 (214)
Q Consensus 209 ~~~~ 212 (214)
..++
T Consensus 250 ~~~~ 253 (259)
T d1tzfa_ 250 KGKA 253 (259)
T ss_dssp TTCC
T ss_pred cCCC
Confidence 6543
|
| >d2cu2a2 c.68.1.20 (A:1-268) Putative mannose-1-phosphate guanylyl transferase (GDP)/mannose-6-phosphate isomerase TTHA1750 {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-diphospho-sugar transferases superfamily: Nucleotide-diphospho-sugar transferases family: mannose-1-phosphate guanylyl transferase domain: Putative mannose-1-phosphate guanylyl transferase (GDP)/mannose-6-phosphate isomerase TTHA1750 species: Thermus thermophilus [TaxId: 274]
Probab=98.99 E-value=4.4e-09 Score=81.54 Aligned_cols=196 Identities=13% Similarity=0.150 Sum_probs=111.1
Q ss_pred CCCCceeeee-CCeehHHHHHHHHhcCCCcCeEEEEeCCCchHHHHHHHHhcC--CcEEEecCCccHHHHHHHHHhhcc-
Q 028081 3 ANMPKQYLPL-LGQPIALYSFYTFSRMVEVKEIVVVCDPSYSDIFEETKEKIN--VDLKFSLPGKERQDSVYSGLQEVD- 78 (214)
Q Consensus 3 ~~~~K~l~~l-~gkpli~~~i~~~~~~~~~~~iiVv~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~sv~~al~~~~- 78 (214)
+.+||||+++ +|+|||+|+++++......++++|+++... +.+. +.++ .++.+-..+.+...++..++..+.
T Consensus 22 ~~~PK~ll~i~g~k~ll~~~i~rl~~~~~~~~i~i~~~~~~-~~~~---~~~~~~~~ii~E~~~~~t~~a~~~~~~~~~~ 97 (268)
T d2cu2a2 22 EDRPKPFLPLFEGKTLLEATLERLAPLVPPERTLLAVRRDQ-EAVA---RPYADGIRLLLEPLGRDTAGAVLLGVAEALK 97 (268)
T ss_dssp TTBCGGGCBCGGGCBHHHHHHHHHTTTSCGGGEEEEEEGGG-HHHH---GGGCSSSEEEEESSCCHHHHHHHHHHHHHHH
T ss_pred CCCCceeeecCCCCCHHHHHHHHhhCcCCccchhhhhhHHH-HHHh---hhhccccceeeeeecCCcccchhhHHHHHhc
Confidence 4579999997 679999999999987655788999988765 2232 2233 333333444445666666654442
Q ss_pred cCCCeEEEEcCCCCCCCHHHHHHHHHHHHh---cCCe--EEeeecccc--EEE--ecC-CC---ceeeecCccch-----
Q 028081 79 FNSELVCIHDSARPLVLSKDVQKVLMDALR---VGAA--VLGVPAKAT--IKE--ANS-ES---FVVRTLDRKTL----- 140 (214)
Q Consensus 79 ~~~~~vl~~~~d~P~v~~~~i~~~i~~~~~---~~~~--i~~~~~~~~--~~~--~~~-~g---~v~~~~~r~~~----- 140 (214)
...+.++++.||.++.........+..... .+.. +.+.|...+ ..+ .++ ++ .+.+..+....
T Consensus 98 ~~~~~vlvl~~D~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~yG~i~~~~~~~~~~~v~~f~EKp~~~~~~~ 177 (268)
T d2cu2a2 98 EGAERLLVLPADHYVGDDEAYREALATMLEAAEEGFVVALGLRPTRPETEYGYIRLGPREGAWYRGEGFVEKPSYAEALE 177 (268)
T ss_dssp HTCSEEEEEESSCEESCHHHHHHHHHHHHHHCCTTCEEEEEECCSSCCSSSCEEEEEEEETTEEEEEEEECCCCHHHHHH
T ss_pred cCCceeEEEecchhhcccHHHHHHHHHHHHHHhcCCeEeeeccccccccccceEEeccccccchhhheeecccchhhhhh
Confidence 245789999999999998877766654322 2332 223333322 111 111 11 23333221110
Q ss_pred -----hhhcC-CcccChHHHHHHHHHHHhc----------CCC-------CCcH---HHHHHhCCCCeEEEecCCCCccc
Q 028081 141 -----WEMQT-PQVIKPDLLKKGFELVNRE----------GLE-------VTDD---VSIVEHLKHPVYITEGSYTNIKV 194 (214)
Q Consensus 141 -----~~~~~-p~~f~~~~l~~~~~~~~~~----------~~~-------~~d~---~~~~~~~g~~i~~v~~~~~~~~I 194 (214)
+..++ -+.|+.+.|.+.++..... +.. +.+. -.++++ ..++.+++.+..|.||
T Consensus 178 ~~~~~~~~N~Giy~f~~~~l~~~~~~~~p~i~~~~~~~~~~~~~~~~f~~l~~iSiDyavlEk-~~~v~~v~~d~~W~Dv 256 (268)
T d2cu2a2 178 YIRKGYVWNGGVFAFAPATMAELFRRHLPSHHEALERLLAGASLEEVYAGLPKISIDYGVMEK-AERVRVVLGRFPWDDV 256 (268)
T ss_dssp HHHTTCEEEEEEEEECHHHHHHHHHHHCHHHHHHHHHHHTTCCHHHHHHTSCCCCHHHHTGGG-CSSEEEEEECSCEECC
T ss_pred hhccCcccchhhhhcchHHHHHHHHhhhHHHHHHHHHHHhcchHHHHHhhCccccchhhhhcc-cCCceEEecCCCcCCC
Confidence 11223 3788877765544332110 000 0000 012222 3578888888899999
Q ss_pred CCHHHHHHH
Q 028081 195 TTPDDLLIA 203 (214)
Q Consensus 195 dtp~Dl~~a 203 (214)
.|.+.+..+
T Consensus 257 Gtw~s~~~~ 265 (268)
T d2cu2a2 257 GNWRALERV 265 (268)
T ss_dssp CSTTHHHHH
T ss_pred cCHHHHHHH
Confidence 999888754
|
| >d2i5ea1 c.68.1.21 (A:1-208) Hypothetical protein MM2497 {Methanosarcina mazei [TaxId: 2209]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-diphospho-sugar transferases superfamily: Nucleotide-diphospho-sugar transferases family: MM2497-like domain: Hypothetical protein MM2497 species: Methanosarcina mazei [TaxId: 2209]
Probab=98.71 E-value=2.7e-07 Score=68.52 Aligned_cols=148 Identities=14% Similarity=0.152 Sum_probs=85.5
Q ss_pred ehHHHHHHHHhcCCCcCeEEEEeCCCchHHHHHHHHhcCCcEEEecCCccHHHHHHHHHhhcccCCCeEEEEcCCCCCCC
Q 028081 16 PIALYSFYTFSRMVEVKEIVVVCDPSYSDIFEETKEKINVDLKFSLPGKERQDSVYSGLQEVDFNSELVCIHDSARPLVL 95 (214)
Q Consensus 16 pli~~~i~~~~~~~~~~~iiVv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sv~~al~~~~~~~~~vl~~~~d~P~v~ 95 (214)
-|+.++++.+.+++ ++.++++++..+. ... ..+..+ ..++.+...++.++++. .++.++++.+|.|+++
T Consensus 31 ~ml~~tl~~l~~~~-~~~v~~vs~~~~~---~~~--~~~~~~--~~~~~~L~~al~~a~~~---~~~~vliig~DlP~L~ 99 (208)
T d2i5ea1 31 LMLNQVISSLKGAG-IEQVDILSPSVYG---LEE--MTEARV--LLDEKDLNEALNRYLKE---AEEPVLIVMADLPLLS 99 (208)
T ss_dssp HHHHHHHHHHHHTT-CSEEEEEESSCTT---CSS--CCSSEE--EECCSCHHHHHHHHHHH---CCSCEEEECSCCTTCC
T ss_pred HHHHHHHHHHHhCC-CcEEEEEcCcHHH---HHH--hhcCCc--ccCCCCHHHHHHHHHhc---CCCCEEEecCCcCcCC
Confidence 48999999999876 7888888876542 110 111122 22334455667777654 3578999999999999
Q ss_pred HHHHHHHHHHHHhcCCeEEeeeccccEEEecCCCceeeecCccchhhhcCCcccChHHHHHHHHHHHhcCCCCCcHHHHH
Q 028081 96 SKDVQKVLMDALRVGAAVLGVPAKATIKEANSESFVVRTLDRKTLWEMQTPQVIKPDLLKKGFELVNREGLEVTDDVSIV 175 (214)
Q Consensus 96 ~~~i~~~i~~~~~~~~~i~~~~~~~~~~~~~~~g~v~~~~~r~~~~~~~~p~~f~~~~l~~~~~~~~~~~~~~~d~~~~~ 175 (214)
++.|+.+++ . ...+...|..| +|.-.-...+.... +-.|....+.. .....
T Consensus 100 ~~~l~~a~~---~-~~d~Vi~Pa~D-------GG~~~l~~~~~~~~----~~~~g~~S~~~--------------h~~~a 150 (208)
T d2i5ea1 100 PEHIKEISS---T-EKDVCIVPGKG-------GGTNALFIKNPSKY----RVKYYGSSFLT--------------HCSIA 150 (208)
T ss_dssp HHHHHHHTT---C-SSSEEEEECGG-------GCEEEEEESCGGGC----CCCCSSSHHHH--------------HHHHH
T ss_pred HHHHHHHHh---c-CCcEEEEecCC-------CCcceeeecCCccc----CcccCcchHHH--------------HHHHH
Confidence 999998764 2 22333455544 23211011111100 11111111111 12234
Q ss_pred HhCCCCeEEEecCCCCcccCCHHHHHHH
Q 028081 176 EHLKHPVYITEGSYTNIKVTTPDDLLIA 203 (214)
Q Consensus 176 ~~~g~~i~~v~~~~~~~~Idtp~Dl~~a 203 (214)
.+.|..+..+......+|||||+||..+
T Consensus 151 ~~~gl~~~~~~~~~l~~DIDtp~DL~~l 178 (208)
T d2i5ea1 151 TDSGQDFEIYDSFMAGTDIDEPEDLVEL 178 (208)
T ss_dssp HTTTCCEEECCCTTTTCCCCSHHHHHHH
T ss_pred HHCCCcEEEecCcccccCCCCHHHHHHH
Confidence 4566777776667788999999999754
|
| >d1omza_ c.68.1.15 (A:) Alpha-1,4-N-acetylhexosaminyltransferase (Alpha-GalNAcT EXTL2) {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-diphospho-sugar transferases superfamily: Nucleotide-diphospho-sugar transferases family: Exostosin domain: Alpha-1,4-N-acetylhexosaminyltransferase (Alpha-GalNAcT EXTL2) species: Mouse (Mus musculus) [TaxId: 10090]
Probab=96.48 E-value=0.002 Score=46.73 Aligned_cols=96 Identities=13% Similarity=0.131 Sum_probs=59.8
Q ss_pred eCCeehHHHHHHHHhcCCCcCeEEEEeCCCchHHHHHHHHhcC---CcEEEecCCccHHHHHHHHHhhcccCCCeEEEEc
Q 028081 12 LLGQPIALYSFYTFSRMVEVKEIVVVCDPSYSDIFEETKEKIN---VDLKFSLPGKERQDSVYSGLQEVDFNSELVCIHD 88 (214)
Q Consensus 12 l~gkpli~~~i~~~~~~~~~~~iiVv~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~sv~~al~~~~~~~~~vl~~~ 88 (214)
.+....|..+++++.+.+..++++||.+....+..+.+++.+. ..+.......+...+.-.|++.+. .|+|+++|
T Consensus 12 yn~~~~l~~~l~sl~~q~~~~~~iiV~d~~sd~~~~~i~~~~~~~~~~~~~~~~~~g~~~a~n~~~~~a~--ge~i~~lD 89 (265)
T d1omza_ 12 YNRTDLLLRLLNHYQAVPSLHKVIVVWNNVGEKGPEELWNSLGPHPIPVIFKPQTANKMRNRLQVFPEVE--TNAVLMVD 89 (265)
T ss_dssp SSCHHHHHHHHHHHTTSTTEEEEEEEECCTTCCCTHHHHHHTCCCSSCEEEEECSSCCGGGGGSCCTTCC--SSEEEEEC
T ss_pred CCCHHHHHHHHHHHHcCCCcCeEEEEECCCCCccHHHHHHHhcccceEEEEecCCCCchhhhhhhHHhCC--cCEEEEeC
Confidence 5677899999999988766677877765432121222233222 222223222222333334555543 69999999
Q ss_pred CCCCCCCHHHHHHHHHHHHhcC
Q 028081 89 SARPLVLSKDVQKVLMDALRVG 110 (214)
Q Consensus 89 ~d~P~v~~~~i~~~i~~~~~~~ 110 (214)
+|. ++.++.|+++++.+....
T Consensus 90 ~D~-~~~~~~l~~l~~~~~~~~ 110 (265)
T d1omza_ 90 DDT-LISAQDLVFAFSIWQQFP 110 (265)
T ss_dssp TTE-EECHHHHHHHHHHHTTST
T ss_pred ccc-CCCHHHHHHHHHHHHhCC
Confidence 998 468999999999887643
|
| >d1xhba2 c.68.1.17 (A:95-422) Polypeptide N-acetylgalactosaminyltransferase 1, N-terminal domain {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-diphospho-sugar transferases superfamily: Nucleotide-diphospho-sugar transferases family: Polypeptide N-acetylgalactosaminyltransferase 1, N-terminal domain domain: Polypeptide N-acetylgalactosaminyltransferase 1, N-terminal domain species: Mouse (Mus musculus) [TaxId: 10090]
Probab=92.58 E-value=0.67 Score=34.78 Aligned_cols=94 Identities=14% Similarity=0.082 Sum_probs=59.0
Q ss_pred ehHHHHHHHHhcCC--Cc-CeEEEEeCCCc---h-HHHHHHHHhcCCcEEEec--CCccHHHHHHHHHhhcccCCCeEEE
Q 028081 16 PIALYSFYTFSRMV--EV-KEIVVVCDPSY---S-DIFEETKEKINVDLKFSL--PGKERQDSVYSGLQEVDFNSELVCI 86 (214)
Q Consensus 16 pli~~~i~~~~~~~--~~-~~iiVv~~~~~---~-~~~~~~~~~~~~~~~~~~--~~~~~~~sv~~al~~~~~~~~~vl~ 86 (214)
..|..+|+.+.+.. .. .+||||=+... . ..+++..+....++.++. ...+...+.-.|++... .+++++
T Consensus 36 ~~l~~~l~Si~~qt~~~~~~EIIvVDdgS~d~~~~~~l~~~~~~~~~~i~vi~~~~n~G~~~a~N~Gi~~a~--gd~i~f 113 (328)
T d1xhba2 36 STLLRTVHSVINRSPRHMIEEIVLVDDASERDFLKRPLESYVKKLKVPVHVIRMEQRSGLIRARLKGAAVSR--GQVITF 113 (328)
T ss_dssp HHHHHHHHHHHHSSCGGGEEEEEEEECSCCCGGGTHHHHHHHHSSSSCEEEEECSSCCCHHHHHHHHHHHCC--SSEEEE
T ss_pred HHHHHHHHHHHhcCCCCCCeEEEEEECCCChhhHHHHHHHHHHhcCCCeEEEEecccccchHHHHHHHHhhh--cceeee
Confidence 46888998876532 11 37877754321 1 123344455444566553 22344555555777664 789999
Q ss_pred EcCCCCCCCHHHHHHHHHHHHhcCCe
Q 028081 87 HDSARPLVLSKDVQKVLMDALRVGAA 112 (214)
Q Consensus 87 ~~~d~P~v~~~~i~~~i~~~~~~~~~ 112 (214)
+|+|.= +.++.++.+++.+...+..
T Consensus 114 lD~D~~-~~p~~l~~l~~~~~~~~~~ 138 (328)
T d1xhba2 114 LDAHCE-CTAGWLEPLLARIKHDRRT 138 (328)
T ss_dssp EESSEE-ECTTCHHHHHHHHHHCTTE
T ss_pred cCcccc-cChhHHHHHHHHHhcCCCe
Confidence 999984 5888999999888765543
|
| >d2bo4a1 c.68.1.18 (A:2-382) Mannosylglycerate synthase, MGS {Rhodothermus marinus [TaxId: 29549]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-diphospho-sugar transferases superfamily: Nucleotide-diphospho-sugar transferases family: MGS-like domain: Mannosylglycerate synthase, MGS species: Rhodothermus marinus [TaxId: 29549]
Probab=92.14 E-value=1.2 Score=34.59 Aligned_cols=90 Identities=14% Similarity=0.080 Sum_probs=55.1
Q ss_pred ehHHHHHHHHhcCCCcCeEEEEeCCCchHHHHHHHH-------hcCCcEEE--------ecCCccH--HHHHHHHHhhcc
Q 028081 16 PIALYSFYTFSRMVEVKEIVVVCDPSYSDIFEETKE-------KINVDLKF--------SLPGKER--QDSVYSGLQEVD 78 (214)
Q Consensus 16 pli~~~i~~~~~~~~~~~iiVv~~~~~~~~~~~~~~-------~~~~~~~~--------~~~~~~~--~~sv~~al~~~~ 78 (214)
+++..+++.+...+..++|+|+-+..+ +....+.+ ..+..+.. ...|.+. ..++..|+....
T Consensus 13 ~il~~~v~~~a~~P~~~eIvVvDdsSd-Dtt~~i~~~~~~~~~~~~~~v~~~~~~~l~~~~~GKG~g~~~A~~~g~~~a~ 91 (381)
T d2bo4a1 13 EVLLHNVRVAAAHPRVHEVLCIGYERD-QTYEAVERAAPEISRATGTPVSVRLQERLGTLRPGKGDGMNTALRYFLEETQ 91 (381)
T ss_dssp HHHHHHHHHHHHSTTCCEEEEEESSCC-HHHHHHHHHHHHHHHHHSCCEEEEECCCCSSSSSSHHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHhCCCeeEEEEEcCCCC-CcHHHHHHHhhhhhccccccchhhhhcccccccCCCcHHHHHHHHHHHHhCC
Confidence 688999998888888888887755443 22222111 11222211 1112322 234444555443
Q ss_pred cCCCeEEEEcCCCCCCCHHHHHHHHHHHHh
Q 028081 79 FNSELVCIHDSARPLVLSKDVQKVLMDALR 108 (214)
Q Consensus 79 ~~~~~vl~~~~d~P~v~~~~i~~~i~~~~~ 108 (214)
.++++++|+|.=-.+|+.+.+++..++.
T Consensus 92 --gd~lvflDADl~~~~pe~i~~L~~~i~~ 119 (381)
T d2bo4a1 92 --WERIHFYDADITSFGPDWITKAEEAADF 119 (381)
T ss_dssp --CSEEEECCTTCSSCCHHHHHHHHHHHHT
T ss_pred --CCEEEEEcCCcCcCCHHHHHHHHHHHhh
Confidence 7899999999755789999999988764
|
| >d1qg8a_ c.68.1.1 (A:) Spore coat polysaccharide biosynthesis protein SpsA {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-diphospho-sugar transferases superfamily: Nucleotide-diphospho-sugar transferases family: Spore coat polysaccharide biosynthesis protein SpsA domain: Spore coat polysaccharide biosynthesis protein SpsA species: Bacillus subtilis [TaxId: 1423]
Probab=90.67 E-value=1.2 Score=31.76 Aligned_cols=94 Identities=7% Similarity=0.011 Sum_probs=59.5
Q ss_pred eCCeehHHHHHHHHhcCCCc-CeEEEEeCCCchHHHHHHHHhcC--CcEEEecC----------CccHHHHHHHHHhhcc
Q 028081 12 LLGQPIALYSFYTFSRMVEV-KEIVVVCDPSYSDIFEETKEKIN--VDLKFSLP----------GKERQDSVYSGLQEVD 78 (214)
Q Consensus 12 l~gkpli~~~i~~~~~~~~~-~~iiVv~~~~~~~~~~~~~~~~~--~~~~~~~~----------~~~~~~sv~~al~~~~ 78 (214)
.++...|..+++.++....- -+|+|+-+... +...++++.+. .++.+... ..+...+.-.|++.+.
T Consensus 10 yN~~~~l~~~l~Si~~Qt~~~~eiivvdd~S~-d~t~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~g~~~a~N~gi~~a~ 88 (255)
T d1qg8a_ 10 YNKSDYVAKSISSILSQTFSDFELFIMDDNSN-EETLNVIRPFLNDNRVRFYQSDISGVKERTEKTRYAALINQAIEMAE 88 (255)
T ss_dssp SSCTTTHHHHHHHHHTCSCCCEEEEEEECSCC-HHHHHHHGGGGGSTTEEEEECCCCSHHHHHSSCHHHHHHHHHHHHCC
T ss_pred CCCHHHHHHHHHHHHhCCCCCeEEEEEECCCC-ccHHHHHHHhhhhcccccccccccccccccccchhcccccccccccc
Confidence 36778899999998754311 26777655433 44555555542 23444321 2223344455777664
Q ss_pred cCCCeEEEEcCCCCCCCHHHHHHHHHHHHhc
Q 028081 79 FNSELVCIHDSARPLVLSKDVQKVLMDALRV 109 (214)
Q Consensus 79 ~~~~~vl~~~~d~P~v~~~~i~~~i~~~~~~ 109 (214)
.++++++|+|-= ..|+.|..+++.+...
T Consensus 89 --g~~i~~lD~Dd~-~~p~~l~~~~~~~~~~ 116 (255)
T d1qg8a_ 89 --GEYITYATDDNI-YMPDRLLKMVRELDTH 116 (255)
T ss_dssp --CSEEEEEETTEE-ECTTHHHHHHHHHHHC
T ss_pred --cccccccccccc-cccchHHHHHHHHHhC
Confidence 789999999984 4788999999887654
|