Citrus Sinensis ID: 028093

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210----
Protein Sequence
MMIGDLKKAISEKTGLDPQEQKVLFRGKEKEDNEHLDVSGMKDKSKVLLLEELTNKEKKPKEVKDSPEKKHEYAKDSEEMRKALQAIAGVRAEVDKLSERVASLEVAVNGGTKVPSEELDTSAELLMKELLKLDGIEAEGEAKVQRKTEVRRVQKFHETLDNLKAINSNPFCDSSNAIKVVTQWETFDSGMGSLNPPPLAPSSTTINQDWERFD
Secondary Structure (PSIPRED)
ccHHHHHHHHHHHHcccccccEEEEcccccccccHHHHcccccccEEEEcccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccEEcccccccccccccccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
ccHHHHHHHHHccccccHHHcEEEEcccccccHHHHcEcccccccEEEEEEcHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHccEEccccHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccEEEEEEEEEcccccccccccccccccEEEEcccEEcc
Coil and Loop (DISEMBL)
MMIGDLKKAIsektgldpqeQKVLFrgkekednehldvsgmkdKSKVLLLEELtnkekkpkevkdspekkheYAKDSEEMRKALQAIAGVRAEVDKLSERVASLEVAVnggtkvpseelDTSAELLMKELLKLDGIEAEGEAKVQRKTEVRRVQKFHETLDNLkainsnpfcdssnaiKVVTQWetfdsgmgslnppplapssttinqdwerfd
Flexible Loop (DISEMBL)
mmigdlkkaisektgldpqeqkvlfrgkekednehldvsgmkdkskvllleeltnkekkpkevkdspekkheyakdseEMRKALQAIAGVRAEVDKLSERVASlevavnggtkvpseeldTSAELLMKELLKLDgieaegeakvqrktevrrVQKFHEtldnlkainsnpfcdssNAIKVVTQWETFDSGmgslnppplapssttinqdwerFD
Low Complexity Region (SEG)
MMIGDLKKAISEKTGLDPQEQKVLFRGKEKEDNEHLDVSGMKDKSKVllleeltnkekkpkeVKDSPEKKHEYAKDSEEMRKALQAIAGVRAEVDKLSERVASLEVAVNGGTKVPSEELDTSAELLMKELLKLDGIEAEGEAKVQRKTEVRRVQKFHETLDNLKAINSNPFCDSSNAIKVVTQWETFDSGMGSLNPPPLAPSSTTINQDWERFD
Disordered region (IsUnstruct)
*****************************************************************************************************************************LMKELLKLD*****************RVQKFHETLDNLKAINSNPFCDSSNAIKVVTQWETF***************************
Disordered Region (DISOPRED)
MMIGDLKKAISEKTGLDPQEQKVLFRGKE******LDVSGMKDKSKV**************************************AIAGVRAEVDKLSERVA**************EELDTSAELLMKELLKLDGIEAEGEAKVQRKTEVRRVQKFHETLDN*********************************************QDWERFD
Disordered Region (DISEMBL)
MMIGDLKKAISEKTGLDPQEQKVLFRGKEKEDNEHLDVSGMKDKSKVLLLEELTNK**********************EMRKALQAIAGVRAEVDKLSERVASLEVAVNGGTKVPSEELDTSAELLMKELLKLDGIEAEGEAKVQRKTEVRRVQKFHETLDNLKAINSNPFCDSSNAIKVVTQWETFDSGMGSLNPPPLAPSSTTINQDWERFD
Disordered Region (DISPRO)
MMIGDLKKAISEKTGLDPQEQKVLFRGKEKEDNEHLDVSGMKDKSKVLLLEELTNKEKKPKEVKDSPEKKHEYAKDSEEMRKALQAIAGVRAEVDKLSERVASLEVAVNGGTKVPSEELDTSAELLMKELLKLDGIEAEGEAKVQRKTEVRRVQKFHETLDNLKAINSNPFCDSSNAIKVVTQWETFDSGMGSL*******SSTTINQDWERFD
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MMIGDLKKAISEKTGLDPQEQKVLFRGKEKEDNEHLDVSGMKDKSKVLLLEELTNKEKKPKEVKDSPEKKHEYAKDSEExxxxxxxxxxxxxxxxxxxxxxxxxxxxVNGGTKVPSEELDTSAELLMKELLKLDGIEAEGEAKVQRKTEVRRVQKFHETLDNLKAINSNPFCDSSNAIKVVTQWETFDSGMGSLNPPPLAPSSTTINQDWERFD
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	214	2.2.26 [Sep-21-2011]
Q8RX71	269	BAG family molecular chap	yes	no	0.929	0.739	0.546	1e-54
Q0WUQ1	342	BAG family molecular chap	no	no	0.724	0.453	0.433	6e-28
Q9LYP4	303	BAG family molecular chap	no	no	0.724	0.511	0.379	7e-23
Q0WPX7	285	BAG family molecular chap	no	no	0.915	0.687	0.293	6e-22

>sp|Q8RX71|BAG4_ARATH BAG family molecular chaperone regulator 4 OS=Arabidopsis thaliana GN=BAG4 PE=1 SV=1

 Score =  213 bits (541), Expect = 1e-54,   Method: Compositional matrix adjust.
 Identities = 117/214 (54%), Positives = 151/214 (70%), Gaps = 15/214 (7%)

Query: 3   IGDLKKAISEKTGLDPQEQKVLFRGKEKEDNEHLDVSGMKDKSKVLLLEELTNK--EKKP 60
            GD+KKA+ +KTGL+  E K+LFRG E++D E L  +G+KD SK++++ E TNK  E++P
Sbjct: 69  FGDVKKALVQKTGLEASELKILFRGVERDDAEQLQAAGVKDASKLVVVVEDTNKRVEQQP 128

Query: 61  KEVKDSPEKKHEYAKDSEEMRKALQAIAGVRAEVDKLSERVASLEVAVNGGTKVPSEELD 120
             V             ++EM KA+ A+  V  EVDKLS+RV +LEVAVNGGT+V   E D
Sbjct: 129 PVV-------------TKEMEKAIAAVNAVTGEVDKLSDRVVALEVAVNGGTQVAVREFD 175

Query: 121 TSAELLMKELLKLDGIEAEGEAKVQRKTEVRRVQKFHETLDNLKAINSNPFCDSSNAIKV 180
            +AELLM++LLKLDGIEAEG+AKVQRK EVRR+Q   E +D LKA  SNPF D S A  V
Sbjct: 176 MAAELLMRQLLKLDGIEAEGDAKVQRKAEVRRIQNLQEAVDKLKARCSNPFVDQSKAAAV 235

Query: 181 VTQWETFDSGMGSLNPPPLAPSSTTINQDWERFD 214
            T+WE+F +G+GSLNPPP A  S  + QDWE+FD
Sbjct: 236 STEWESFGNGVGSLNPPPPASPSANVTQDWEKFD 269

Co-chaperone that regulates diverse cellular pathways, such as programmed cell death and stress responses.
Arabidopsis thaliana (taxid: 3702)

>sp|Q0WUQ1|BAG1_ARATH BAG family molecular chaperone regulator 1 OS=Arabidopsis thaliana GN=BAG1 PE=1 SV=1

 Score =  124 bits (310), Expect = 6e-28,   Method: Compositional matrix adjust.
 Identities = 72/166 (43%), Positives = 110/166 (66%), Gaps = 11/166 (6%)

Query: 3   IGDLKKAISEKTGLDPQEQKVLFRGKEKEDNEHLDVSGMKDKSKVLLLEELTNKEKKPKE 62
            G+LKK ++  TG+  Q+QK++++ KE++    LDVSG+KDKSK++L+E+  ++EK+  E
Sbjct: 88  FGELKKMLTGPTGIHHQDQKLMYKDKERDSKAFLDVSGVKDKSKMVLIEDPLSQEKRFLE 147

Query: 63  VKDSPEKKHEYAKDSEEMRKALQAIAGVRAEVDKLSERVASLEVAVNGGTKVPSEELDTS 122
           ++       + AK      KA +AI+ +  EVD+L  RV++ E+    G K+  ++L T 
Sbjct: 148 MR-------KIAKTE----KASKAISDISLEVDRLGGRVSAFEMVTKKGGKIAEKDLVTV 196

Query: 123 AELLMKELLKLDGIEAEGEAKVQRKTEVRRVQKFHETLDNLKAINS 168
            ELLM EL+KLD I AEG+ K+QRK +V+RVQ + ETLD LK  NS
Sbjct: 197 IELLMNELIKLDAIVAEGDVKLQRKMQVKRVQNYVETLDALKVKNS 242

Co-chaperone that regulates diverse cellular pathways, such as programmed cell death and stress responses.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9LYP4|BAG3_ARATH BAG family molecular chaperone regulator 3 OS=Arabidopsis thaliana GN=BAG3 PE=1 SV=1

 Score =  107 bits (266), Expect = 7e-23,   Method: Compositional matrix adjust.
 Identities = 63/166 (37%), Positives = 103/166 (62%), Gaps = 11/166 (6%)

Query: 3   IGDLKKAISEKTGLDPQEQKVLFRGKEKEDNEHLDVSGMKDKSKVLLLEELTNKEKKPKE 62
            G+LKK +S++ GL  ++ KVL++ KE++    LD+ G+KD+SK+++           KE
Sbjct: 66  FGELKKMLSDQVGLHHEDMKVLYKDKERDSKMFLDLCGVKDRSKLVV-----------KE 114

Query: 63  VKDSPEKKHEYAKDSEEMRKALQAIAGVRAEVDKLSERVASLEVAVNGGTKVPSEELDTS 122
              S EK+    + +  + KA ++I+ +  EVD+L+ +V++ E  +N G KV  + L   
Sbjct: 115 DPISQEKRLLAKRKNAAIEKASKSISDISFEVDRLAGQVSAFETVINKGGKVEEKSLVNL 174

Query: 123 AELLMKELLKLDGIEAEGEAKVQRKTEVRRVQKFHETLDNLKAINS 168
            E+LM +LL+LD I A+G+ K+ RK +V+RVQK+ E LD LK  NS
Sbjct: 175 IEMLMNQLLRLDAIIADGDVKLMRKMQVQRVQKYVEALDLLKVKNS 220

Co-chaperone that regulates diverse cellular pathways, such as programmed cell death and stress responses.

Arabidopsis thaliana (taxid: 3702)

>sp|Q0WPX7|BAG2_ARATH BAG family molecular chaperone regulator 2 OS=Arabidopsis thaliana GN=BAG2 PE=2 SV=1

 Score =  104 bits (259), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 71/242 (29%), Positives = 128/242 (52%), Gaps = 46/242 (19%)

Query: 3   IGDLKKAISEKTGLDPQEQKVLFRGKEKEDNEHLDVSGMKDKSKVLLLEELTNKEKKPKE 62
            G+LKK +S  TG+  Q+ +++++ KE++    LD+SG+KD+SK++L+E+  ++EK+  E
Sbjct: 60  FGELKKILSGATGVHHQDMQIIYKDKERDSKMFLDLSGVKDRSKLILIEDPISQEKRLLE 119

Query: 63  VKDSPEKKHEYAKDSEEMRKALQAIAGVRAEVDKLSERVASLEVAVNGGTKVPSEELDTS 122
           ++    K+           K+ +AI+ +  +V++L+ ++++ +  +  G KV  + L+  
Sbjct: 120 LRKIATKE-----------KSSKAISDISFQVERLAGQLSAFDTVIGKGGKVEEKNLENL 168

Query: 123 AELLMKELLKLDGIEAEGEAKVQRKTEVRRVQKFHETLDNLKAINSN------------- 169
            E+LM +L+KLD I  +G+ K+++K +  R+ K+ E LD LK  NS              
Sbjct: 169 MEMLMNQLVKLDAISGDGDVKLKKKMQEERLHKYVEALDLLKIKNSRQPQTKPKPQYKER 228

Query: 170 ------------PFCDSSN-AIKVVTQWETFDSGMGS---LNPP-PLAPSSTTINQDWER 212
                       P   SS+  + + T+WETFDS   S   L P  P+ P        WE 
Sbjct: 229 EMLTFYEEASRKPTASSSSPPVIITTRWETFDSSSASTATLQPVRPVHPKF-----KWEL 283

Query: 213 FD 214
           F+
Sbjct: 284 FN 285

Co-chaperone that regulates diverse cellular pathways, such as programmed cell death and stress responses.

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	214
297735646	223	unnamed protein product [Vitis vinifera]	0.939	0.901	0.580	1e-61
225439501	263	PREDICTED: uncharacterized protein LOC10	0.939	0.764	0.580	2e-61
363808014	253	uncharacterized protein LOC100799120 [Gl	0.939	0.794	0.584	4e-60
449461761	281	PREDICTED: LOW QUALITY PROTEIN: BAG fami	0.971	0.740	0.580	8e-60
449524539	281	PREDICTED: BAG family molecular chaperon	0.971	0.740	0.580	5e-59
356503109	250	PREDICTED: uncharacterized protein LOC10	0.939	0.804	0.561	3e-57
356521046	254	PREDICTED: uncharacterized protein LOC10	0.929	0.783	0.561	4e-57
242054875	259	hypothetical protein SORBIDRAFT_03g03883	0.948	0.783	0.542	2e-53
224055346	263	predicted protein [Populus trichocarpa]	0.939	0.764	0.514	5e-53
3068705	269	unknown [Arabidopsis thaliana]	0.929	0.739	0.546	5e-53

>gi|297735646|emb|CBI18140.3| unnamed protein product [Vitis vinifera]

 Score =  241 bits (616), Expect = 1e-61,   Method: Compositional matrix adjust.
 Identities = 123/212 (58%), Positives = 157/212 (74%), Gaps = 11/212 (5%)

Query: 3   IGDLKKAISEKTGLDPQEQKVLFRGKEKEDNEHLDVSGMKDKSKVLLLEELTNKEKKPKE 62
            GDLKK + ++TGL+P++Q++LFRGKE +D E L   G+KD+SK+LLLEE+ +KE+K +E
Sbjct: 23  FGDLKKRLVQETGLEPKDQRLLFRGKEIDDQECLQQVGVKDRSKLLLLEEMASKERKLEE 82

Query: 63  VKDSPEKKHEYAKDSEEMRKALQAIAGVRAEVDKLSERVASLEVAVNGGTKVPSEELDTS 122
                      A+ S+E+ KA +A+A V+AEVDKL E+V +LE  VNGGT V ++E    
Sbjct: 83  -----------ARRSDEISKACKAVAEVKAEVDKLLEKVVALEATVNGGTTVENKEFVVL 131

Query: 123 AELLMKELLKLDGIEAEGEAKVQRKTEVRRVQKFHETLDNLKAINSNPFCDSSNAIKVVT 182
            ELLM++LLKLDGIEAEGEAKVQR+ EVRRVQ   E LD LKA NSNPF   SNA+ V T
Sbjct: 132 TELLMRQLLKLDGIEAEGEAKVQRRAEVRRVQSLVEMLDTLKARNSNPFSTKSNAVSVTT 191

Query: 183 QWETFDSGMGSLNPPPLAPSSTTINQDWERFD 214
           +WETF+SG+GSL  PP  PSST +NQDWE FD
Sbjct: 192 KWETFESGLGSLTAPPPMPSSTAVNQDWETFD 223

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225439501|ref|XP_002271076.1| PREDICTED: uncharacterized protein LOC100243686 [Vitis vinifera]

 Score =  240 bits (613), Expect = 2e-61,   Method: Compositional matrix adjust.
 Identities = 123/212 (58%), Positives = 157/212 (74%), Gaps = 11/212 (5%)

Query: 3   IGDLKKAISEKTGLDPQEQKVLFRGKEKEDNEHLDVSGMKDKSKVLLLEELTNKEKKPKE 62
            GDLKK + ++TGL+P++Q++LFRGKE +D E L   G+KD+SK+LLLEE+ +KE+K +E
Sbjct: 63  FGDLKKRLVQETGLEPKDQRLLFRGKEIDDQECLQQVGVKDRSKLLLLEEMASKERKLEE 122

Query: 63  VKDSPEKKHEYAKDSEEMRKALQAIAGVRAEVDKLSERVASLEVAVNGGTKVPSEELDTS 122
                      A+ S+E+ KA +A+A V+AEVDKL E+V +LE  VNGGT V ++E    
Sbjct: 123 -----------ARRSDEISKACKAVAEVKAEVDKLLEKVVALEATVNGGTTVENKEFVVL 171

Query: 123 AELLMKELLKLDGIEAEGEAKVQRKTEVRRVQKFHETLDNLKAINSNPFCDSSNAIKVVT 182
            ELLM++LLKLDGIEAEGEAKVQR+ EVRRVQ   E LD LKA NSNPF   SNA+ V T
Sbjct: 172 TELLMRQLLKLDGIEAEGEAKVQRRAEVRRVQSLVEMLDTLKARNSNPFSTKSNAVSVTT 231

Query: 183 QWETFDSGMGSLNPPPLAPSSTTINQDWERFD 214
           +WETF+SG+GSL  PP  PSST +NQDWE FD
Sbjct: 232 KWETFESGLGSLTAPPPMPSSTAVNQDWETFD 263

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|363808014|ref|NP_001242463.1| uncharacterized protein LOC100799120 [Glycine max] gi|255636230|gb|ACU18456.1| unknown [Glycine max]

 Score =  236 bits (603), Expect = 4e-60,   Method: Compositional matrix adjust.
 Identities = 124/212 (58%), Positives = 151/212 (71%), Gaps = 11/212 (5%)

Query: 3   IGDLKKAISEKTGLDPQEQKVLFRGKEKEDNEHLDVSGMKDKSKVLLLEELTNKEKKPKE 62
            GD+KK +  KTGL+P EQ++ FRG EK DN HL + G+KDKSK+LLLE   +KE+K +E
Sbjct: 53  FGDVKKLLVNKTGLEPVEQRLFFRGIEKGDNLHLHLEGVKDKSKLLLLEGTASKERKLEE 112

Query: 63  VKDSPEKKHEYAKDSEEMRKALQAIAGVRAEVDKLSERVASLEVAVNGGTKVPSEELDTS 122
            +               M KA +AIAGVRAEVDKLS RV S+EVA++GG K   +E    
Sbjct: 113 TRKQ-----------NVMSKAFEAIAGVRAEVDKLSNRVTSIEVAIDGGNKASEKEFLVL 161

Query: 123 AELLMKELLKLDGIEAEGEAKVQRKTEVRRVQKFHETLDNLKAINSNPFCDSSNAIKVVT 182
            ELLM +LLKLDGIEAEGEAK+QRK EV RVQ   + LD+LKA N+NPF +SSNA+KV T
Sbjct: 162 TELLMSQLLKLDGIEAEGEAKLQRKAEVNRVQNLVDKLDSLKARNANPFSNSSNAVKVTT 221

Query: 183 QWETFDSGMGSLNPPPLAPSSTTINQDWERFD 214
           QWETFDSGM SL+ P   PSST + Q+WERFD
Sbjct: 222 QWETFDSGMESLDAPSDNPSSTKVTQEWERFD 253

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449461761|ref|XP_004148610.1| PREDICTED: LOW QUALITY PROTEIN: BAG family molecular chaperone regulator 4-like [Cucumis sativus]

 Score =  235 bits (600), Expect = 8e-60,   Method: Compositional matrix adjust.
 Identities = 123/212 (58%), Positives = 156/212 (73%), Gaps = 4/212 (1%)

Query: 3   IGDLKKAISEKTGLDPQEQKVLFRGKEKEDNEHLDVSGMKDKSKVLLLEELTNKEKKPKE 62
            GD+KK + + TGL  +EQ++LFRGKEK+D+EHL  +G+K+ SK+LLLE  TNK++K  E
Sbjct: 74  FGDMKKHLGQXTGLQLEEQRLLFRGKEKDDDEHLHTAGVKNLSKILLLENKTNKQRKAVE 133

Query: 63  VKDSPEKKHEYAKDSEEMRKALQAIAGVRAEVDKLSERVASLEVAVNGGTKVPSEELDTS 122
                 K  E    S E+ KA  AIA VR+EVDKL++RVA+L+VAVNGGT V  +E   S
Sbjct: 134 DV----KVVEEVGSSGEVSKASAAIADVRSEVDKLADRVAALQVAVNGGTNVEDKEFVVS 189

Query: 123 AELLMKELLKLDGIEAEGEAKVQRKTEVRRVQKFHETLDNLKAINSNPFCDSSNAIKVVT 182
            ELLM++LLKLD I+AEGEAK+QRK EVRR+Q F +TLD LKA  S P  ++ N + V T
Sbjct: 190 TELLMRQLLKLDSIDAEGEAKLQRKAEVRRIQNFVDTLDALKAKISKPISNNHNTVSVTT 249

Query: 183 QWETFDSGMGSLNPPPLAPSSTTINQDWERFD 214
           +WETFDSG+GSL PP  APSST + QDWERFD
Sbjct: 250 EWETFDSGVGSLTPPSPAPSSTRVTQDWERFD 281

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449524539|ref|XP_004169279.1| PREDICTED: BAG family molecular chaperone regulator 4-like [Cucumis sativus]

 Score =  233 bits (593), Expect = 5e-59,   Method: Compositional matrix adjust.
 Identities = 123/212 (58%), Positives = 155/212 (73%), Gaps = 4/212 (1%)

Query: 3   IGDLKKAISEKTGLDPQEQKVLFRGKEKEDNEHLDVSGMKDKSKVLLLEELTNKEKKPKE 62
            GD+KK +   TGL  +EQ++LFRGKEK+D+EHL  +G+K+ SK+LLLE  TNK++K  E
Sbjct: 74  FGDMKKHLVAITGLQLEEQRLLFRGKEKDDDEHLHTAGVKNLSKILLLENKTNKQRKAVE 133

Query: 63  VKDSPEKKHEYAKDSEEMRKALQAIAGVRAEVDKLSERVASLEVAVNGGTKVPSEELDTS 122
                 K  E    S E+ KA  AIA VR+EVDKL++RVA+L+VAVNGGT V  +E   S
Sbjct: 134 DV----KVVEEVGSSGEVSKASAAIADVRSEVDKLADRVAALQVAVNGGTNVEDKEFVVS 189

Query: 123 AELLMKELLKLDGIEAEGEAKVQRKTEVRRVQKFHETLDNLKAINSNPFCDSSNAIKVVT 182
            ELLM++LLKLD I+AEGEAK+QRK EVRR+Q F +TLD LKA  S P  ++ N + V T
Sbjct: 190 TELLMRQLLKLDSIDAEGEAKLQRKAEVRRIQNFVDTLDALKAKISKPISNNHNTVSVTT 249

Query: 183 QWETFDSGMGSLNPPPLAPSSTTINQDWERFD 214
           +WETFDSG+GSL PP  APSST + QDWERFD
Sbjct: 250 EWETFDSGVGSLTPPSPAPSSTRVTQDWERFD 281

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356503109|ref|XP_003520354.1| PREDICTED: uncharacterized protein LOC100804846 [Glycine max]

 Score =  227 bits (578), Expect = 3e-57,   Method: Compositional matrix adjust.
 Identities = 119/212 (56%), Positives = 147/212 (69%), Gaps = 11/212 (5%)

Query: 3   IGDLKKAISEKTGLDPQEQKVLFRGKEKEDNEHLDVSGMKDKSKVLLLEELTNKEKKPKE 62
            GD+KK +  KTGL+P EQ++ FRG EK DN+ L   G+KDKSK+ LLE + +KE+K +E
Sbjct: 50  FGDVKKLLVNKTGLEPAEQRLFFRGIEKGDNQRLQAEGVKDKSKLFLLEGIGSKERKLEE 109

Query: 63  VKDSPEKKHEYAKDSEEMRKALQAIAGVRAEVDKLSERVASLEVAVNGGTKVPSEELDTS 122
            +              EM KA +AIA VRAEVDKLS RV S+EV++NGG K   +E    
Sbjct: 110 TRKE-----------NEMSKAFEAIASVRAEVDKLSNRVTSIEVSINGGNKASEKEFLVL 158

Query: 123 AELLMKELLKLDGIEAEGEAKVQRKTEVRRVQKFHETLDNLKAINSNPFCDSSNAIKVVT 182
            ELLM +LLKLDGIEAEGEAK+QRK EV RVQ   + LD+LKA N+NPF +SSN +KV T
Sbjct: 159 TELLMSQLLKLDGIEAEGEAKLQRKAEVNRVQNLVDKLDSLKARNANPFSNSSNDVKVTT 218

Query: 183 QWETFDSGMGSLNPPPLAPSSTTINQDWERFD 214
           QWETFDSGM S + P    SST + QDWE+FD
Sbjct: 219 QWETFDSGMESSDAPSDNSSSTKVTQDWEQFD 250

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356521046|ref|XP_003529169.1| PREDICTED: uncharacterized protein LOC100789587 [Glycine max]

 Score =  226 bits (577), Expect = 4e-57,   Method: Compositional matrix adjust.
 Identities = 118/210 (56%), Positives = 154/210 (73%), Gaps = 11/210 (5%)

Query: 5   DLKKAISEKTGLDPQEQKVLFRGKEKEDNEHLDVSGMKDKSKVLLLEELTNKEKKPKEVK 64
           D+K  +  +TGL P+EQ++ F GKEK++ ++L   G++DKSK+LLLE+ +++E+K +E++
Sbjct: 56  DVKSLLVHRTGLQPEEQQLFFGGKEKDNEDNLHEEGVRDKSKLLLLEDASSEERKREEIR 115

Query: 65  DSPEKKHEYAKDSEEMRKALQAIAGVRAEVDKLSERVASLEVAVNGGTKVPSEELDTSAE 124
                KH       EM KA +A+A VRAEVDKL+ERV+ LEVAV+GGT+V  +E   S E
Sbjct: 116 -----KHN------EMLKASEAVAEVRAEVDKLAERVSVLEVAVDGGTRVSDKEFLMSTE 164

Query: 125 LLMKELLKLDGIEAEGEAKVQRKTEVRRVQKFHETLDNLKAINSNPFCDSSNAIKVVTQW 184
           LLM++LLKLD IEAEGE K+QRK EVRRVQ F +TLD+LKA NSNPF     A+ V TQW
Sbjct: 165 LLMRQLLKLDSIEAEGEVKLQRKAEVRRVQNFVDTLDSLKAKNSNPFTPIGKAVSVATQW 224

Query: 185 ETFDSGMGSLNPPPLAPSSTTINQDWERFD 214
           ETFDSGMGSLN P    SS  ++QDWER D
Sbjct: 225 ETFDSGMGSLNAPTSMSSSRNVSQDWERLD 254

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|242054875|ref|XP_002456583.1| hypothetical protein SORBIDRAFT_03g038830 [Sorghum bicolor] gi|241928558|gb|EES01703.1| hypothetical protein SORBIDRAFT_03g038830 [Sorghum bicolor]

 Score =  214 bits (545), Expect = 2e-53,   Method: Compositional matrix adjust.
 Identities = 115/212 (54%), Positives = 143/212 (67%), Gaps = 9/212 (4%)

Query: 3   IGDLKKAISEKTGLDPQEQKVLFRGKEKEDNEHLDVSGMKDKSKVLLLEELTNKEKKPKE 62
            G+LK  +++ TGL+P+ Q++ FRGKEK D E L  +G+KD +K+LLLE         K 
Sbjct: 57  FGELKSILAQTTGLEPERQRLFFRGKEKSDREFLHTAGVKDGAKLLLLE---------KP 107

Query: 63  VKDSPEKKHEYAKDSEEMRKALQAIAGVRAEVDKLSERVASLEVAVNGGTKVPSEELDTS 122
              + E+K E     E M KA +A+A VRAEVDKLS +V  LE  V GG KV  +E    
Sbjct: 108 APANIEQKVEPVVMDESMMKACEAVARVRAEVDKLSAKVCDLEKNVLGGRKVEDKEFVVL 167

Query: 123 AELLMKELLKLDGIEAEGEAKVQRKTEVRRVQKFHETLDNLKAINSNPFCDSSNAIKVVT 182
            ELLM +LLKLDGIEAEGEA+ QRK EVRRVQ   ETLD LKA N+NPF D + A+ V T
Sbjct: 168 TELLMMQLLKLDGIEAEGEARAQRKAEVRRVQSLVETLDKLKARNANPFSDHNKAVSVTT 227

Query: 183 QWETFDSGMGSLNPPPLAPSSTTINQDWERFD 214
           QWETF++GMGSL+ PP   SST +N DWE+FD
Sbjct: 228 QWETFENGMGSLSAPPPRVSSTQVNTDWEQFD 259

Source: Sorghum bicolor

Species: Sorghum bicolor

Genus: Sorghum

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224055346|ref|XP_002298491.1| predicted protein [Populus trichocarpa] gi|222845749|gb|EEE83296.1| predicted protein [Populus trichocarpa]

 Score =  213 bits (542), Expect = 5e-53,   Method: Compositional matrix adjust.
 Identities = 109/212 (51%), Positives = 151/212 (71%), Gaps = 11/212 (5%)

Query: 3   IGDLKKAISEKTGLDPQEQKVLFRGKEKEDNEHLDVSGMKDKSKVLLLEELTNKEKKPKE 62
            GDLKK ++ +TGL+ +EQ++LF+GKEKE++E+L + G+KD SKV+L E+  +KE+K +E
Sbjct: 63  FGDLKKVLAHETGLESKEQRLLFKGKEKENDEYLHMVGVKDMSKVILFEDPASKERKLEE 122

Query: 63  VKDSPEKKHEYAKDSEEMRKALQAIAGVRAEVDKLSERVASLEVAVNGGTKVPSEELDTS 122
           +K +           ++  KA +A+A VRAEVDKL E+V +LE  +  GTK+  +E    
Sbjct: 123 MKRN-----------QDTLKAYEAVARVRAEVDKLCEKVVALETNIRSGTKIAEKEFSVL 171

Query: 123 AELLMKELLKLDGIEAEGEAKVQRKTEVRRVQKFHETLDNLKAINSNPFCDSSNAIKVVT 182
            ELLM +LLKLD IEA+G+AKVQRK EVRR+Q F +TL+NLK  NS  F  +SNA+ V T
Sbjct: 172 TELLMIQLLKLDSIEADGQAKVQRKIEVRRIQSFVDTLENLKVRNSKSFSHNSNAVSVTT 231

Query: 183 QWETFDSGMGSLNPPPLAPSSTTINQDWERFD 214
           +WETF SG+GSL+ P    S+T +NQDWE FD
Sbjct: 232 KWETFASGVGSLSAPVPLQSATKLNQDWELFD 263

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|3068705|gb|AAC14405.1| unknown [Arabidopsis thaliana]

 Score =  213 bits (541), Expect = 5e-53,   Method: Compositional matrix adjust.
 Identities = 117/214 (54%), Positives = 151/214 (70%), Gaps = 15/214 (7%)

Query: 3   IGDLKKAISEKTGLDPQEQKVLFRGKEKEDNEHLDVSGMKDKSKVLLLEELTNK--EKKP 60
            GD+KKA+ +KTGL+  E K+LFRG E++D E L  +G+KD SK++++ E TNK  E++P
Sbjct: 69  FGDVKKALVQKTGLEASELKILFRGVERDDAEQLQAAGVKDASKLVVVVEDTNKRVEQQP 128

Query: 61  KEVKDSPEKKHEYAKDSEEMRKALQAIAGVRAEVDKLSERVASLEVAVNGGTKVPSEELD 120
             V             ++EM KA+ A+  V  EVDKLS+RV +LEVAVNGGT+V   E D
Sbjct: 129 PVV-------------TKEMEKAIAAVNAVTGEVDKLSDRVVALEVAVNGGTQVAVREFD 175

Query: 121 TSAELLMKELLKLDGIEAEGEAKVQRKTEVRRVQKFHETLDNLKAINSNPFCDSSNAIKV 180
            +AELLM++LLKLDGIEAEG+AKVQRK EVRR+Q   E +D LKA  SNPF D S A  V
Sbjct: 176 MAAELLMRQLLKLDGIEAEGDAKVQRKAEVRRIQNLQEAVDKLKARCSNPFVDQSKAAAV 235

Query: 181 VTQWETFDSGMGSLNPPPLAPSSTTINQDWERFD 214
            T+WE+F +G+GSLNPPP A  S  + QDWE+FD
Sbjct: 236 STEWESFGNGVGSLNPPPPASPSANVTQDWEKFD 269

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	214
TAIR|locus:2074353	269	BAG4 "BCL-2-associated athanog	0.929	0.739	0.528	9.2e-52
TAIR|locus:2173108	342	BAG1 "BCL-2-associated athanog	0.710	0.444	0.413	4e-26
TAIR|locus:2182900	303	BAG3 "BCL-2-associated athanog	0.789	0.557	0.354	1.1e-23
TAIR|locus:2145683	163	AT5G14360 "AT5G14360" [Arabido	0.205	0.269	0.5	4.2e-08
ZFIN|ZDB-GENE-050309-89	206	bag1 "BCL2-associated athanoge	0.710	0.737	0.257	2.2e-05
TAIR|locus:2168788	165	AT5G40630 "AT5G40630" [Arabido	0.205	0.266	0.477	3.6e-05
POMBASE|SPBC16G5.11c	195	bag101 "BAG family molecular c	0.733	0.805	0.239	0.00048

TAIR|locus:2074353 BAG4 "BCL-2-associated athanogene 4" [Arabidopsis thaliana (taxid:3702)]

 Score = 537 (194.1 bits), Expect = 9.2e-52, P = 9.2e-52
 Identities = 112/212 (52%), Positives = 146/212 (68%)

Query:     4 GDLKKAISEKTGLDPQEQKVLFRGKEKEDNEHLDVSGMKDKSKVXXXXXXXXXXXXXXXV 63
             GD+KKA+ +KTGL+  E K+LFRG E++D E L  +G+KD SK+               V
Sbjct:    70 GDVKKALVQKTGLEASELKILFRGVERDDAEQLQAAGVKDASKLVVV------------V 117

Query:    64 KDSPEKKHEYAKD-SEEMRKALQAIAGVRAEVDKLSERVASLEVAVNGGTKVPSEELDTS 122
             +D+ ++  +     ++EM KA+ A+  V  EVDKLS+RV +LEVAVNGGT+V   E D +
Sbjct:   118 EDTNKRVEQQPPVVTKEMEKAIAAVNAVTGEVDKLSDRVVALEVAVNGGTQVAVREFDMA 177

Query:   123 AELLMKELLKLDGIEAEGEAKVQRKTEVRRVQKFHETLDNLKAINSNPFCDSSNAIKVVT 182
             AELLM++LLKLDGIEAEG+AKVQRK EVRR+Q   E +D LKA  SNPF D S A  V T
Sbjct:   178 AELLMRQLLKLDGIEAEGDAKVQRKAEVRRIQNLQEAVDKLKARCSNPFVDQSKAAAVST 237

Query:   183 QWETFDSGMGSLNPPPLAPSSTTINQDWERFD 214
             +WE+F +G+GSLNPPP A  S  + QDWE+FD
Sbjct:   238 EWESFGNGVGSLNPPPPASPSANVTQDWEKFD 269

GO:0005634 "nucleus" evidence=ISM

GO:0051087 "chaperone binding" evidence=IEA

GO:0009408 "response to heat" evidence=IEP

GO:0009409 "response to cold" evidence=IEP

GO:0009651 "response to salt stress" evidence=IMP

GO:0010228 "vegetative to reproductive phase transition of meristem" evidence=IMP

GO:0005829 "cytosol" evidence=IDA

TAIR|locus:2173108 BAG1 "BCL-2-associated athanogene 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 295 (108.9 bits), Expect = 4.0e-26, P = 4.0e-26
 Identities = 69/167 (41%), Positives = 103/167 (61%)

Query:     4 GDLKKAISEKTGLDPQEQKVLFRGKEKEDNEHLDVSGMKDKSKVXXXXXXXXXXXXXXXV 63
             G+LKK ++  TG+  Q+QK++++ KE++    LDVSG+KDKSK+               +
Sbjct:    89 GELKKMLTGPTGIHHQDQKLMYKDKERDSKAFLDVSGVKDKSKMVL-------------I 135

Query:    64 KD--SPEKKHEYAKDSEEMRKALQAIAGVRAEVDKLSERVASLEVAVNGGTKVPSEELDT 121
             +D  S EK+    +   +  KA +AI+ +  EVD+L  RV++ E+    G K+  ++L T
Sbjct:   136 EDPLSQEKRFLEMRKIAKTEKASKAISDISLEVDRLGGRVSAFEMVTKKGGKIAEKDLVT 195

Query:   122 SAELLMKELLKLDGIEAEGEAKVQRKTEVRRVQKFHETLDNLKAINS 168
               ELLM EL+KLD I AEG+ K+QRK +V+RVQ + ETLD LK  NS
Sbjct:   196 VIELLMNELIKLDAIVAEGDVKLQRKMQVKRVQNYVETLDALKVKNS 242

GO:0005739 "mitochondrion" evidence=ISM;IDA

GO:0051087 "chaperone binding" evidence=IEA

GO:0006833 "water transport" evidence=RCA

GO:0009651 "response to salt stress" evidence=RCA

GO:0009750 "response to fructose stimulus" evidence=RCA

GO:0030003 "cellular cation homeostasis" evidence=RCA

GO:0048767 "root hair elongation" evidence=RCA

GO:0070838 "divalent metal ion transport" evidence=RCA

TAIR|locus:2182900 BAG3 "BCL-2-associated athanogene 3" [Arabidopsis thaliana (taxid:3702)]

 Score = 272 (100.8 bits), Expect = 1.1e-23, P = 1.1e-23
 Identities = 66/186 (35%), Positives = 111/186 (59%)

Query:     4 GDLKKAISEKTGLDPQEQKVLFRGKEKEDNEHLDVSGMKDKSKVXXXXXXXXXXXXXXXV 63
             G+LKK +S++ GL  ++ KVL++ KE++    LD+ G+KD+SK+               V
Sbjct:    67 GELKKMLSDQVGLHHEDMKVLYKDKERDSKMFLDLCGVKDRSKLV--------------V 112

Query:    64 KDSP--EKKHEYAK-DSEEMRKALQAIAGVRAEVDKLSERVASLEVAVNGGTKVPSEELD 120
             K+ P  ++K   AK  +  + KA ++I+ +  EVD+L+ +V++ E  +N G KV  + L 
Sbjct:   113 KEDPISQEKRLLAKRKNAAIEKASKSISDISFEVDRLAGQVSAFETVINKGGKVEEKSLV 172

Query:   121 TSAELLMKELLKLDGIEAEGEAKVQRKTEVRRVQKFHETLDNLKAINSNPFCDSSNAIKV 180
                E+LM +LL+LD I A+G+ K+ RK +V+RVQK+ E LD LK  NS    + + +++ 
Sbjct:   173 NLIEMLMNQLLRLDAIIADGDVKLMRKMQVQRVQKYVEALDLLKVKNSAKKVEVNKSVRH 232

Query:   181 VTQWET 186
               Q +T
Sbjct:   233 KPQTQT 238

GO:0005634 "nucleus" evidence=ISM

GO:0051087 "chaperone binding" evidence=IEA

GO:0006301 "postreplication repair" evidence=RCA

GO:0006816 "calcium ion transport" evidence=RCA

TAIR|locus:2145683 AT5G14360 "AT5G14360" [Arabidopsis thaliana (taxid:3702)]

 Score = 125 (49.1 bits), Expect = 4.2e-08, P = 4.2e-08
 Identities = 22/44 (50%), Positives = 36/44 (81%)

Query:     4 GDLKKAISEKTGLDPQEQKVLFRGKEKEDNEHLDVSGMKDKSKV 47
             G+LK  +S  TGL+P++Q+++F+GKE+ED+E+L + G+ DK KV
Sbjct:    92 GELKMVLSLLTGLEPKQQRLVFKGKEREDHEYLHMVGVGDKDKV 135

GO:0003674 "molecular_function" evidence=ND

GO:0005739 "mitochondrion" evidence=ISM

ZFIN|ZDB-GENE-050309-89 bag1 "BCL2-associated athanogene 1" [Danio rerio (taxid:7955)]

 Score = 116 (45.9 bits), Expect = 2.2e-05, P = 2.2e-05
 Identities = 44/171 (25%), Positives = 84/171 (49%)

Query:     2 MIGDLKKAISEKTGLDPQEQKVLFRGKE-KEDNEHLDVSGMKDKSKVXXXXXXXXXXXXX 60
             ++ DL +A++E TG+    QK++F+GK  KE  E L   G+K   K+             
Sbjct:    30 LLKDLCEALTEATGVPAPSQKIIFKGKSLKEMEEPLSGFGIKQGCKMMMIGK-------- 81

Query:    61 XXVKDSPEKKHEYAK--DSEE-MRKALQAIAGVRAEVDKLSERVASLEVAVNGGTKVPSE 117
                ++SPE++ E  K  D E+ + +  + +  V  E+  L     + E+      K+  +
Sbjct:    82 ---RNSPEEEVELKKLKDIEKSVEQTAKKLEKVDGELTGLKNGFLAKELQAEALNKL-DQ 137

Query:   118 ELDTSAELLMKELLKLDGI---EAEGEAKVQRKTEVRRVQKFHETLDNLKA 165
              +  +AE  MK L ++DG+   E+  + ++++K  V+ VQ +    D ++A
Sbjct:   138 RVKVAAEQFMKILEEIDGMSLPESFSDCRMKKKGLVKTVQGYLAQCDKVEA 188

GO:0051087 "chaperone binding" evidence=IEA

TAIR|locus:2168788 AT5G40630 "AT5G40630" [Arabidopsis thaliana (taxid:3702)]

 Score = 110 (43.8 bits), Expect = 3.6e-05, P = 3.6e-05
 Identities = 21/44 (47%), Positives = 33/44 (75%)

Query:     4 GDLKKAISEKTGLDPQEQKVLFRGKEKEDNEHLDVSGMKDKSKV 47
             G+LK  I+  +G++ +EQ++LFRGKE+ED E+L + G+ D  KV
Sbjct:   102 GELKMMIAIVSGIEAKEQRLLFRGKEREDREYLHMIGVGDGDKV 145

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

POMBASE|SPBC16G5.11c bag101 "BAG family molecular chaperone regulator Bag101 (predicted)" [Schizosaccharomyces pombe (taxid:4896)]

 Score = 105 (42.0 bits), Expect = 0.00048, P = 0.00048
 Identities = 39/163 (23%), Positives = 75/163 (46%)

Query:     3 IGDLKKAISEKTGLDPQEQKVLFRGKEKEDNE-HLDVSGMKDKSKVXXXXXXXXXXXXXX 61
             + +L   + E T +  ++ K+ + GK  +D +  L   G+K+ SK+              
Sbjct:    27 LSELIDDLLETTEISEKKVKLFYAGKRLKDKKASLSKLGLKNHSKILCIRPHKQQRGSKE 86

Query:    62 XVKDSPEKKHEYAKDSEEMRKALQAIAGVRAEVDK-LSERVASLEVAVNGGTKVPSEELD 120
               KD+ E   +   ++    +    I  +   VDK LS    +     +   K  +++  
Sbjct:    87 --KDTVEPAPKAEAENPVFSRISGEIKAIDQYVDKELSPMYDNYVNKPSNDPKQKNKQKL 144

Query:   121 TSAELLMKELLKLDGIEAEGEAKV--QRKTEVRRVQKFHETLD 161
               +ELL+++LLKLDG++  G  K+  +RK  V ++QK  + +D
Sbjct:   145 MISELLLQQLLKLDGVDVLGSEKLRFERKQLVSKIQKMLDHVD 187


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.308   0.127   0.344    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      214       199   0.00085  111 3  11 23  0.45    33
                                                     31  0.45    35


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  7
  No. of states in DFA:  582 (62 KB)
  Total size of DFA:  156 KB (2093 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  23.15u 0.16s 23.31t   Elapsed:  00:00:01
  Total cpu time:  23.15u 0.16s 23.31t   Elapsed:  00:00:01
  Start:  Fri May 10 02:21:47 2013   End:  Fri May 10 02:21:48 2013

GO:0005730 "nucleolus" evidence=IDA

GO:0005737 "cytoplasm" evidence=IDA

GO:0006457 "protein folding" evidence=ISO

GO:0051087 "chaperone binding" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q8RX71	BAG4_ARATH	No assigned EC number	0.5467	0.9299	0.7397	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: GSVIVG00001323001 SubName- Full=Chromosome chr8 scaffold_115, whole genome shotgun sequence; (253 aa) (Vitis vinifera)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	214
cd01812	71	cd01812, BAG1_N, Ubiquitin-like domain of BAG1	1e-15
pfam02179	76	pfam02179, BAG, BAG domain	7e-09
cd01769	69	cd01769, UBL, Ubiquitin-like domain of UBL	4e-08
smart00264	79	smart00264, BAG, BAG domains, present in regulator	3e-06
pfam00240	69	pfam00240, ubiquitin, Ubiquitin family	9e-06
smart00213	72	smart00213, UBQ, Ubiquitin homologues	0.001
cd01813	74	cd01813, UBP_N, UBP ubiquitin processing protease	0.004

>gnl|CDD|176407 cd01812, BAG1_N, Ubiquitin-like domain of BAG1

 Score = 68.1 bits (167), Expect = 1e-15
 Identities = 28/49 (57%), Positives = 43/49 (87%)

Query: 4  GDLKKAISEKTGLDPQEQKVLFRGKEKEDNEHLDVSGMKDKSKVLLLEE 52
          GDLKK ++  TG++P++QK++F+GKE++D E LD+SG+KD SKV+LLE+
Sbjct: 23 GDLKKMLAPVTGVEPRDQKLIFKGKERDDAETLDMSGVKDGSKVMLLED 71

BAG1_N N-terminal ubiquitin-like (Ubl) domain of the BAG1 protein. This domain occurs together with the BAG domain and is closely related to the Ubl domain of a family of deubiquitinases that includes Rpn11, UBP6 (USP14), USP7 (HAUSP). Length = 71

>gnl|CDD|216918 pfam02179, BAG, BAG domain

 Score = 50.7 bits (122), Expect = 7e-09
 Identities = 27/77 (35%), Positives = 41/77 (53%), Gaps = 4/77 (5%)

Query: 90  VRAEVDKLSERVASLEVAVNGGTKVPSEELDTSAELLMKELLKLDGIEAEG--EAKVQRK 147
           + A +D++ + +       +G  K   +E    +E+LMK LLKLD I+ EG  + +  RK
Sbjct: 2   INAILDEVEKELLPEVEQFDG--KKLEKEYKKLSEMLMKLLLKLDAIDTEGNPDIREARK 59

Query: 148 TEVRRVQKFHETLDNLK 164
             V+RVQ   E LD  K
Sbjct: 60  RAVKRVQGLLEKLDAKK 76

Domain present in Hsp70 regulators. Length = 76

>gnl|CDD|176364 cd01769, UBL, Ubiquitin-like domain of UBL

 Score = 48.4 bits (116), Expect = 4e-08
 Identities = 15/51 (29%), Positives = 32/51 (62%)

Query: 1  MMIGDLKKAISEKTGLDPQEQKVLFRGKEKEDNEHLDVSGMKDKSKVLLLE 51
            + +LK  I+ K G+ P++Q++++ GK  +D++ L   G++D S + L+ 
Sbjct: 18 DTVAELKAKIAAKEGVPPEQQRLIYAGKILKDDKTLSDYGIQDGSTLHLVL 68

UBLs function by remodeling the surface of their target proteins, changing their target's half-life, enzymatic activity, protein-protein interactions, subcellular localization or other properties. At least 10 different ubiquitin-like modifications exist in mammals, and attachment of different ubls to a target leads to different biological consequences. Ubl-conjugation cascades are initiated by activating enzymes, which also coordinate the ubls with their downstream pathways. Length = 69

>gnl|CDD|214591 smart00264, BAG, BAG domains, present in regulator of Hsp70 proteins

 Score = 43.5 bits (103), Expect = 3e-06
 Identities = 27/81 (33%), Positives = 43/81 (53%), Gaps = 4/81 (4%)

Query: 86  AIAGVRAEVDKLSERVASLEVAVNGGTKVPSEELDTSAELLMKELLKLDGIEAEG--EAK 143
           +I  +   +D++ +++   EV V  G K   +E    +E LMK LLKLD ++ EG  + +
Sbjct: 1   SIKKINEVLDEVQKKIEK-EVQVADG-KKDDKEYLRLSEELMKLLLKLDSVDVEGCEDIR 58

Query: 144 VQRKTEVRRVQKFHETLDNLK 164
             RK  VR +Q     LD+ K
Sbjct: 59  EARKRLVRLIQNLLNALDSKK 79

BAG domains, present in Bcl-2-associated athanogene 1 and silencer of death domains. Length = 79

>gnl|CDD|215813 pfam00240, ubiquitin, Ubiquitin family

 Score = 41.8 bits (99), Expect = 9e-06
 Identities = 17/52 (32%), Positives = 31/52 (59%)

Query: 3  IGDLKKAISEKTGLDPQEQKVLFRGKEKEDNEHLDVSGMKDKSKVLLLEELT 54
          + +LK+ I +K G+   +Q+++F GK  ED+  L   G++D S + L+  L 
Sbjct: 18 VSELKEKIEDKEGIPVDQQRLIFSGKVLEDDTTLSEYGIQDGSTLHLVLRLR 69

This family contains a number of ubiquitin-like proteins: SUMO (smt3 homologue), Nedd8, Elongin B, Rub1, and Parkin. A number of them are thought to carry a distinctive five-residue motif termed the proteasome-interacting motif (PIM), which may have a biologically significant role in protein delivery to proteasomes and recruitment of proteasomes to transcription sites. Length = 69

>gnl|CDD|214563 smart00213, UBQ, Ubiquitin homologues

 Score = 36.1 bits (84), Expect = 0.001
 Identities = 17/50 (34%), Positives = 34/50 (68%)

Query: 1  MMIGDLKKAISEKTGLDPQEQKVLFRGKEKEDNEHLDVSGMKDKSKVLLL 50
            + +LK+ I+E TG+ P++Q+++++GK  ED+  L   G++D S + L+
Sbjct: 21 DTVSELKEKIAELTGIPPEQQRLIYKGKVLEDDRTLADYGIQDGSTIHLV 70

Ubiquitin-mediated proteolysis is involved in the regulated turnover of proteins required for controlling cell cycle progression. Length = 72

>gnl|CDD|176408 cd01813, UBP_N, UBP ubiquitin processing protease

 Score = 34.8 bits (80), Expect = 0.004
 Identities = 16/51 (31%), Positives = 30/51 (58%), Gaps = 3/51 (5%)

Query: 3  IGDLKKAISEKTGLDPQEQKVL---FRGKEKEDNEHLDVSGMKDKSKVLLL 50
          + DLK+ I   TG+ P+ QK+L    +GK  ED+  +    +K  +K++++
Sbjct: 22 VLDLKQFIKTLTGVLPERQKLLGLKVKGKPAEDDVKISALKLKPNTKIMMM 72

The UBP (ubiquitin processing protease) domain (also referred to as USP which stands for "ubiquitin-specific protease") is present at in a large family of cysteine proteases that specifically cleave ubiquitin conjugates. This family includes Rpn11, UBP6 (USP14), USP7 (HAUSP). This domain is closely related to the amino-terminal ubiquitin-like domain of BAG1 (Bcl2-associated anthanogene1) protein and is found only in eukaryotes. Length = 74

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	214
PF02179	76	BAG: BAG domain; InterPro: IPR003103 BAG domains a	99.68
smart00264	79	BAG BAG domains, present in regulator of Hsp70 pro	99.66
KOG4361	344	consensus BCL2-associated athanogene-like proteins	99.54
cd01807	74	GDX_N ubiquitin-like domain of GDX. GDX contains a	99.53
cd01797	78	NIRF_N amino-terminal ubiquitin-like domain of Np9	99.49
PF00240	69	ubiquitin: Ubiquitin family; InterPro: IPR000626 U	99.48
cd01793	74	Fubi Fubi ubiquitin-like protein. Fubi is a ubiqui	99.48
cd01798	70	parkin_N amino-terminal ubiquitin-like of parkin p	99.47
cd01813	74	UBP_N UBP ubiquitin processing protease. The UBP (	99.47
cd01815	75	BMSC_UbP_N Ubiquitin-like domain of BMSC-UbP. BMSC	99.47
cd01794	70	DC_UbP_C dendritic cell derived ubiquitin-like pro	99.46
cd01812	71	BAG1_N Ubiquitin-like domain of BAG1. BAG1_N N-ter	99.46
cd01791	73	Ubl5 UBL5 ubiquitin-like modifier. UBL5 (also know	99.43
cd01796	71	DDI1_N DNA damage inducible protein 1 ubiquitin-li	99.41
cd01808	71	hPLIC_N Ubiquitin-like domain of hPLIC-1 and hPLIC	99.39
cd01810	74	ISG15_repeat2 ISG15 ubiquitin-like protein, second	99.39
cd01809	72	Scythe_N Ubiquitin-like domain of Scythe protein.	99.39
cd01804	78	midnolin_N Ubiquitin-like domain of midnolin. midn	99.38
cd01800	76	SF3a120_C Ubiquitin-like domain of Mammalian splic	99.38
cd01805	77	RAD23_N Ubiquitin-like domain of RAD23. RAD23 belo	99.37
PTZ00044	76	ubiquitin; Provisional	99.36
cd01806	76	Nedd8 Nebb8-like ubiquitin protein. Nedd8 (also kn	99.33
cd01803	76	Ubiquitin Ubiquitin. Ubiquitin (includes Ubq/RPL40	99.32
cd01802	103	AN1_N ubiquitin-like domain of AN1. AN1 (also know	99.32
cd01792	80	ISG15_repeat1 ISG15 ubiquitin-like protein, first	99.3
cd01790	79	Herp_N Homocysteine-responsive endoplasmic reticul	99.28
cd01799	75	Hoil1_N Ubiquitin-like domain of HOIL1. HOIL1_N HO	99.18
cd01769	69	UBL Ubiquitin-like domain of UBL. UBLs function by	99.18
smart00213	64	UBQ Ubiquitin homologues. Ubiquitin-mediated prote	99.14
cd01814	113	NTGP5 Ubiquitin-like NTGP5 and ATGP4. NTGP5 and AT	99.05
cd01795	107	USP48_C USP ubiquitin-specific protease. The USP (	99.05
cd01789	84	Alp11_N Ubiquitin-like domain of Alp11 tubulin-fol	99.02
KOG0010	493	consensus Ubiquitin-like protein [Posttranslationa	98.96
cd01763	87	Sumo Small ubiquitin-related modifier (SUMO). Smal	98.95
TIGR00601	378	rad23 UV excision repair protein Rad23. All protei	98.93
KOG0005	70	consensus Ubiquitin-like protein [Cell cycle contr	98.92
KOG0004	156	consensus Ubiquitin/40S ribosomal protein S27a fus	98.83
PF14560	87	Ubiquitin_2: Ubiquitin-like domain; PDB: 1WJN_A 2K	98.8
KOG0003	128	consensus Ubiquitin/60s ribosomal protein L40 fusi	98.63
PF11976	72	Rad60-SLD: Ubiquitin-2 like Rad60 SUMO-like; Inter	98.52
cd01801	77	Tsc13_N Ubiquitin-like domain of Tsc13. Tsc13_N N-	98.5
KOG0011	340	consensus Nucleotide excision repair factor NEF2,	98.35
KOG0001	75	consensus Ubiquitin and ubiquitin-like proteins [P	98.28
cd00196	69	UBQ Ubiquitin-like proteins. Ubiquitin homologs; I	98.24
KOG4248	1143	consensus Ubiquitin-like protein, regulator of apo	98.21
KOG1872	473	consensus Ubiquitin-specific protease [Posttransla	98.09
PF13881	111	Rad60-SLD_2: Ubiquitin-2 like Rad60 SUMO-like; PDB	98.06
PLN02560	308	enoyl-CoA reductase	97.97
cd01788	119	ElonginB Ubiquitin-like domain of Elongin B. Elong	97.65
KOG4361	344	consensus BCL2-associated athanogene-like proteins	97.59
KOG0006	446	consensus E3 ubiquitin-protein ligase (Parkin prot	97.0
PF11543	80	UN_NPL4: Nuclear pore localisation protein NPL4; I	96.46
KOG3206	234	consensus Alpha-tubulin folding cofactor B [Posttr	96.4
KOG0013	231	consensus Uncharacterized conserved protein [Funct	95.41
PF10302	97	DUF2407: DUF2407 ubiquitin-like domain; InterPro:	95.07
PF15044	76	CLU_N: Mitochondrial function, CLU-N-term	95.03
PF11470	65	TUG-UBL1: GLUT4 regulating protein TUG; InterPro:	94.59
PF08817	79	YukD: WXG100 protein secretion system (Wss), prote	94.07
KOG1769	99	consensus Ubiquitin-like proteins [Posttranslation	93.44
KOG3493	73	consensus Ubiquitin-like protein [Posttranslationa	93.23
KOG4495	110	consensus RNA polymerase II transcription elongati	92.4
KOG4583	391	consensus Membrane-associated ER protein involved	86.6

>PF02179 BAG: BAG domain; InterPro: IPR003103 BAG domains are present in Bcl-2-associated athanogene 1 and silencer of death domains

Probab=99.68  E-value=9.2e-17  Score=117.96  Aligned_cols=72  Identities=42%  Similarity=0.595  Sum_probs=67.0

Q ss_pred             HHHHHHHHHH-HHHHHHHHHHHhhCCCCCCchhhhhHHHHHHHHHHhhcccccch--hhHHHHHHHHHHHHHHHHHHHHH
Q 028093           87 IAGVRAEVDK-LSERVASLEVAVNGGTKVPSEELDTSAELLMKELLKLDGIEAEG--EAKVQRKTEVRRVQKFHETLDNL  163 (214)
Q Consensus        87 I~~i~~evd~-L~~~V~~~e~~v~~~~k~~eke~~~L~E~Lm~~LlkLD~Ie~~G--d~R~~RK~~VkrVQ~~le~LD~~  163 (214)
                      |..+..+|+. |.++|..|      +++..+++|.+|+|+||+.|++||+|+++|  ++|.+||.+|++||++++.||.+
T Consensus         2 I~~i~~~v~~~l~~~v~~~------~~~~~~~~~~~l~E~L~~~LlkLD~I~~~g~~~iR~~RK~~v~~iq~~l~~lD~~   75 (76)
T PF02179_consen    2 IEKIIDEVEKELQPEVEQF------DGKKDEKEYLRLSEMLMQLLLKLDSIETEGNPEIREKRKQAVKRIQQLLDKLDSL   75 (76)
T ss_dssp             HHHHHHHHHHCHHHHHHHH------HHHHCCHHHHHHHHHHHHHHHHHHTCECSSSHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHH------hccCcHHHHHHHHHHHHHHHHHhcCcccCCCHHHHHHHHHHHHHHHHHHHHHHcc
Confidence            6677789999 99999999      666789999999999999999999999999  89999999999999999999997


Q ss_pred             H
Q 028093          164 K  164 (214)
Q Consensus       164 k  164 (214)
                      |
T Consensus        76 k   76 (76)
T PF02179_consen   76 K   76 (76)
T ss_dssp             H
T ss_pred             C
Confidence            6

The BAG proteins are modulators of chaperone activity, they bind to HSP70/HSC70 proteins and promote substrate release. The proteins have anti-apoptotic activity and increase the anti-cell death function of BCL-2 induced by various stimuli. BAG-1 binds to the serine/threonine kinase Raf-1 or Hsc70/Hsp70 in a mutually exclusive interaction. BAG-1 promotes cell growth by binding to and stimulating Raf-1 activity. The binding of Hsp70 to BAG-1 diminishes Raf-1 signalling and inhibits subsequent events, such as DNA synthesis, as well as arrests the cell cycle. BAG-1 has been suggested to function as a molecular switch that encourages cells to proliferate in normal conditions but become quiescent under a stressful environment []. BAG-family proteins contain a single BAG domain, except for human BAG-5 which has four BAG repeats. The BAG domain is a conserved region located at the C terminus of the BAG-family proteins that binds the ATPase domain of Hsc70/Hsp70. The BAG domain is evolutionarily conserved, and BAG domain containing proteins have been described and/or proven in a variety of organisms including Mus musculus (Mouse), Xenopus spp., Drosophila spp., Bombyx mori (Silk moth), Caenorhabditis elegans, Saccharomyces cerevisiae (Baker's yeast), Schizosaccharomyces pombe (Fission yeast), and Arabidopsis thaliana (Mouse-ear cress). The BAG domain has 110-124 amino acids and is comprised of three anti-parallel alpha-helices, each approximately 30-40 amino acids in length. The first and second helices interact with the serine/threonine kinase Raf-1 and the second and third helices are the sites of the BAG domain interaction with the ATPase domain of Hsc70/Hsp70. Binding of the BAG domain to the ATPase domain is mediated by both electrostatic and hydrophobic interactions in BAG-1 and is energy requiring.; GO: 0051087 chaperone binding; PDB: 1M7K_A 1M62_A 1T7S_A 1UGO_A 1I6Z_A 3A8Y_C 1UK5_A 3FZM_B 3FZL_B 3M3Z_B ....

>smart00264 BAG BAG domains, present in regulator of Hsp70 proteins

Probab=99.66  E-value=2.5e-16  Score=117.01  Aligned_cols=73  Identities=37%  Similarity=0.446  Sum_probs=63.2

Q ss_pred             HHHHHHHHH-HHHHHHHHHHHHHhhCCCCCCchhhhhHHHHHHHHHHhhcccccch--hhHHHHHHHHHHHHHHHHHHHH
Q 028093           86 AIAGVRAEV-DKLSERVASLEVAVNGGTKVPSEELDTSAELLMKELLKLDGIEAEG--EAKVQRKTEVRRVQKFHETLDN  162 (214)
Q Consensus        86 aI~~i~~ev-d~L~~~V~~~e~~v~~~~k~~eke~~~L~E~Lm~~LlkLD~Ie~~G--d~R~~RK~~VkrVQ~~le~LD~  162 (214)
                      .|..+..+| ..|.+++..+      .+++.+++|.+|+|+||++|++||+|+++|  ++|.+||.+|++||++++.||.
T Consensus         4 ~v~~~~~ev~~~l~~~v~~~------~~~~~~~~~~~l~E~l~~~LlkLD~i~~~g~~~~R~~RK~~v~~iq~~l~~lD~   77 (79)
T smart00264        4 KINRVLDEVVKKIEKEVQVA------DGKKDDKEYLRLSEELMKLLLKLDSVDVEGCPDIREARKRLVRLIQNLLNALDS   77 (79)
T ss_pred             HHHHHHHHHHHHHHHHHHhh------cchhHHHHHHHHHHHHHHHHHHHcCcCcCCcHHHHHHHHHHHHHHHHHHHHHhc
Confidence            445555566 4667777776      678999999999999999999999999999  8999999999999999999998


Q ss_pred             HH
Q 028093          163 LK  164 (214)
Q Consensus       163 ~k  164 (214)
                      ++
T Consensus        78 ~~   79 (79)
T smart00264       78 KK   79 (79)
T ss_pred             cC
Confidence            63

BAG domains, present in Bcl-2-associated athanogene 1 and silencer of death domains

>KOG4361 consensus BCL2-associated athanogene-like proteins and related BAG family chaperone regulators [Signal transduction mechanisms]

Probab=99.54  E-value=4.7e-16  Score=142.94  Aligned_cols=197  Identities=30%  Similarity=0.397  Sum_probs=171.2

Q ss_pred             HHHHHHHHHhCCCCCCc--eEEecCeec-CCcchhhhcCCCCCCEEEEeccccccccCCcccCCCCcchhhhhhchHHHH
Q 028093            5 DLKKAISEKTGLDPQEQ--KVLFRGKEK-EDNEHLDVSGMKDKSKVLLLEELTNKEKKPKEVKDSPEKKHEYAKDSEEMR   81 (214)
Q Consensus         5 ~LK~~l~e~tGipp~~Q--KLifkGK~L-~d~~~L~~~GvkdgSki~Lv~~p~s~e~r~~~~~~s~~~~~~e~~k~~~~~   81 (214)
                      +++..+.+.+|+...++  +++|.++++ +....|+.+|+++-|++.++.++.+++.+           ....+......
T Consensus        88 d~a~~~~~~ag~sh~d~~~k~~y~~~e~rd~~l~l~~~g~p~~sk~~~~~~~~~q~~~-----------~~~~~~~p~~~  156 (344)
T KOG4361|consen   88 DLAKPLTEDAGLSHYDQEVKLVYVDKELRDQSLRLSSAGVPDASKINVVPDPGSQRAR-----------QLGALVAPAPT  156 (344)
T ss_pred             hhhcccccccceeecccccccceecccccccccccccccCcccccceeccChhhcccc-----------ccccccccccc
Confidence            89999999999998887  999999996 78999999999999999999999998776           33344444455


Q ss_pred             HHHHHHHHHHHHHHHHHHHHH---HHHHHhhCCCCCCchhhhhHHHHHHH----HHHhhcccccchhhHHHHHHHHHHHH
Q 028093           82 KALQAIAGVRAEVDKLSERVA---SLEVAVNGGTKVPSEELDTSAELLMK----ELLKLDGIEAEGEAKVQRKTEVRRVQ  154 (214)
Q Consensus        82 ~a~~aI~~i~~evd~L~~~V~---~~e~~v~~~~k~~eke~~~L~E~Lm~----~LlkLD~Ie~~Gd~R~~RK~~VkrVQ  154 (214)
                      ++...++.+..+++++.+++.   ..+-.++.+.......+....+.||.    .||++|.+..+||+...|+..++|+|
T Consensus       157 q~s~~v~~~~~~t~r~~~~~v~p~~~~~~~~~~~q~e~~p~~~~iq~l~~~~~e~ll~~~~~~~~~dv~~~~~~~~~r~q  236 (344)
T KOG4361|consen  157 QTSKNVSDPQLETYRLIGQVVDPEQKELVPNGGGQPESDPLVAQIQLLMNSLSEELLLLDAILPEGDVEVPRKPAVVRKQ  236 (344)
T ss_pred             ccccccccccceeeeccccccchhhhhcccCCCCCcCCChhhhhHHHhhhhcchhhhhhcccCCCccccccccccccccc
Confidence            666777777778888888886   77788888888888999999999999    79999999999999999999999999


Q ss_pred             HHHHHHHHHHhhcCCCCCCCCCceeeeeecceeccCCCCCCCCCCCCCCCccCCCcccc
Q 028093          155 KFHETLDNLKAINSNPFCDSSNAIKVVTQWETFDSGMGSLNPPPLAPSSTTINQDWERF  213 (214)
Q Consensus       155 ~~le~LD~~k~~n~~~~~~~~~~~~~~t~we~fd~~~~s~~~~~~~~~~~~~~~~we~f  213 (214)
                      ++-+..|.++..++..+-+...+..+.+ |+.+-.+.+.+.+|+..|++-+|.+.||-|
T Consensus       237 ~~seaq~~l~~~~s~~~~~~~~~~~a~~-~~~~~~~~~~~~~p~~~~~~~~V~~~~~~~  294 (344)
T KOG4361|consen  237 AYSEAQDLLKALDSTSNEEQPAAPSAQP-VEVEGPEPGPLQAPPEHPSSLKVQQILEKV  294 (344)
T ss_pred             chhhhhhhhhhcccccccccccccccCc-hhhcCCCcCCCCCCcccCCccchhhHhhhh
Confidence            9999999999999987766664344444 999999999999999999999999998865

>cd01807 GDX_N ubiquitin-like domain of GDX

Probab=99.53  E-value=1e-14  Score=105.44  Aligned_cols=53  Identities=26%  Similarity=0.416  Sum_probs=50.8

Q ss_pred             CcHHHHHHHHHHHhCCCCCCceEEecCeecCCcchhhhcCCCCCCEEEEeccc
Q 028093            1 MMIGDLKKAISEKTGLDPQEQKVLFRGKEKEDNEHLDVSGMKDKSKVLLLEEL   53 (214)
Q Consensus         1 ~Tv~~LK~~l~e~tGipp~~QKLifkGK~L~d~~~L~~~GvkdgSki~Lv~~p   53 (214)
                      +||++||++|++.+|+|+++|||+|+|+.|+|+.+|+.|||++||+|||+..|
T Consensus        21 ~tV~~lK~~i~~~~gi~~~~q~L~~~G~~L~d~~~L~~~~i~~~~~l~l~~~~   73 (74)
T cd01807          21 ESVSTLKKLVSEHLNVPEEQQRLLFKGKALADDKRLSDYSIGPNAKLNLVVRP   73 (74)
T ss_pred             CcHHHHHHHHHHHHCCCHHHeEEEECCEECCCCCCHHHCCCCCCCEEEEEEcC
Confidence            58999999999999999999999999999999999999999999999999764

GDX contains an N-terminal ubiquitin-like domain as well as an uncharacterized c-terminal domain. The function of GDX is unknown.

>cd01797 NIRF_N amino-terminal ubiquitin-like domain of Np95 and NIRF

Probab=99.49  E-value=3e-14  Score=105.18  Aligned_cols=54  Identities=24%  Similarity=0.373  Sum_probs=51.2

Q ss_pred             CcHHHHHHHHHHHhCCCCCCceEEecCeecCCcchhhhcCCCCCCEEEEecccc
Q 028093            1 MMIGDLKKAISEKTGLDPQEQKVLFRGKEKEDNEHLDVSGMKDKSKVLLLEELT   54 (214)
Q Consensus         1 ~Tv~~LK~~l~e~tGipp~~QKLifkGK~L~d~~~L~~~GvkdgSki~Lv~~p~   54 (214)
                      .||++||++|++.+|+|+++|||||+||.|+|+.+|+.|||++||+|+|+..+.
T Consensus        23 ~TV~~lK~~i~~~~gi~~~~QrLi~~Gk~L~D~~tL~~y~i~~~~~i~l~~~~~   76 (78)
T cd01797          23 TKVEELREKIQELFNVEPECQRLFYRGKQMEDGHTLFDYNVGLNDIIQLLVRQD   76 (78)
T ss_pred             CcHHHHHHHHHHHhCCCHHHeEEEeCCEECCCCCCHHHcCCCCCCEEEEEEecC
Confidence            489999999999999999999999999999999999999999999999997643

NIRF_N This CD represents the amino-terminal ubiquitin-like domain of a family of nuclear proteins that includes Np95 and NIRF (Np95/ICBP90-like RING finger) protein. Both Np95 and NIRF have a domain architecture consisting of a ubiquitin-like domain, a PHD finger, a YDG/SRA domain, Rb-binding motifs and a RING finger domain. Both Np95 and NIRF are ubiquitin ligases that ubiquitinate PCNP (PEST-containing nuclear proteins). While Np95 is capable of binding histones, NIRF is involved in cell cycle regulation.

>PF00240 ubiquitin: Ubiquitin family; InterPro: IPR000626 Ubiquitinylation is an ATP-dependent process that involves the action of at least three enzymes: a ubiquitin-activating enzyme (E1, IPR000011 from INTERPRO), a ubiquitin-conjugating enzyme (E2, IPR000608 from INTERPRO), and a ubiquitin ligase (E3, IPR000569 from INTERPRO, IPR003613 from INTERPRO), which work sequentially in a cascade

Probab=99.48  E-value=5.4e-14  Score=99.32  Aligned_cols=53  Identities=36%  Similarity=0.651  Sum_probs=50.8

Q ss_pred             CcHHHHHHHHHHHhCCCCCCceEEecCeecCCcchhhhcCCCCCCEEEEeccc
Q 028093            1 MMIGDLKKAISEKTGLDPQEQKVLFRGKEKEDNEHLDVSGMKDKSKVLLLEEL   53 (214)
Q Consensus         1 ~Tv~~LK~~l~e~tGipp~~QKLifkGK~L~d~~~L~~~GvkdgSki~Lv~~p   53 (214)
                      .||++||++|++.+|+|++.|+|+|+|+.|+|+.+|.+|||++|++|+|+.++
T Consensus        16 ~tV~~lK~~i~~~~~~~~~~~~L~~~G~~L~d~~tL~~~~i~~~~~I~l~~k~   68 (69)
T PF00240_consen   16 DTVADLKQKIAEETGIPPEQQRLIYNGKELDDDKTLSDYGIKDGSTIHLVIKP   68 (69)
T ss_dssp             SBHHHHHHHHHHHHTSTGGGEEEEETTEEESTTSBTGGGTTSTTEEEEEEESS
T ss_pred             CCHHHhhhhcccccccccccceeeeeeecccCcCcHHHcCCCCCCEEEEEEec
Confidence            48999999999999999999999999999999999999999999999998764

There are many different E3 ligases, which are responsible for the type of ubiquitin chain formed, the specificity of the target protein, and the regulation of the ubiquitinylation process []. Ubiquitinylation is an important regulatory tool that controls the concentration of key signalling proteins, such as those involved in cell cycle control, as well as removing misfolded, damaged or mutant proteins that could be harmful to the cell. Several ubiquitin-like molecules have been discovered, such as Ufm1 (IPR005375 from INTERPRO), SUMO1 (IPR003653 from INTERPRO), NEDD8, Rad23 (IPR004806 from INTERPRO), Elongin B and Parkin (IPR003977 from INTERPRO), the latter being involved in Parkinson's disease []. Ubiquitin is a protein of 76 amino acid residues, found in all eukaryotic cells and whose sequence is extremely well conserved from protozoan to vertebrates. Ubiquitin acts through its post-translational attachment (ubiquitinylation) to other proteins, where these modifications alter the function, location or trafficking of the protein, or targets it for destruction by the 26S proteasome []. The terminal glycine in the C-terminal 4-residue tail of ubiquitin can form an isopeptide bond with a lysine residue in the target protein, or with a lysine in another ubiquitin molecule to form a ubiquitin chain that attaches itself to a target protein. Ubiquitin has seven lysine residues, any one of which can be used to link ubiquitin molecules together, resulting in different structures that alter the target protein in different ways. It appears that Lys(11)-, Lys(29) and Lys(48)-linked poly-ubiquitin chains target the protein to the proteasome for degradation, while mono-ubiquitinylated and Lys(6)- or Lys(63)-linked poly-ubiquitin chains signal reversible modifications in protein activity, location or trafficking []. For example, Lys(63)-linked poly-ubiquitinylation is known to be involved in DNA damage tolerance, inflammatory response, protein trafficking and signal transduction through kinase activation []. In addition, the length of the ubiquitin chain alters the fate of the target protein. Regulatory proteins such as transcription factors and histones are frequent targets of ubquitinylation [].; GO: 0005515 protein binding; PDB: 2DZI_A 2XEW_E 3NOB_E 2KWU_B 2Y5B_F 3PHD_G 2KWV_B 2KOX_A 2XK5_B 3NHE_B ....

>cd01793 Fubi Fubi ubiquitin-like protein

Probab=99.48  E-value=4.5e-14  Score=102.21  Aligned_cols=52  Identities=21%  Similarity=0.393  Sum_probs=49.9

Q ss_pred             CcHHHHHHHHHHHhCCCCCCceEEecCeecCCcchhhhcCCCCCCEEEEecc
Q 028093            1 MMIGDLKKAISEKTGLDPQEQKVLFRGKEKEDNEHLDVSGMKDKSKVLLLEE   52 (214)
Q Consensus         1 ~Tv~~LK~~l~e~tGipp~~QKLifkGK~L~d~~~L~~~GvkdgSki~Lv~~   52 (214)
                      .||++||.+|++.+|+|+++|||+|+||.|+|+.+|++|||+++++|||+..
T Consensus        19 ~tV~~lK~~i~~~~gip~~~q~Li~~Gk~L~D~~tL~~~~i~~~~tl~l~~~   70 (74)
T cd01793          19 ETVSDIKAHVAGLEGIDVEDQVLLLAGVPLEDDATLGQCGVEELCTLEVAGR   70 (74)
T ss_pred             CcHHHHHHHHHhhhCCCHHHEEEEECCeECCCCCCHHHcCCCCCCEEEEEEe
Confidence            4899999999999999999999999999999999999999999999999864

Fubi is a ubiquitin-like protein encoded by the fau gene which has an N-terminal ubiquitin-like domain (also referred to as FUBI) fused to the ribosomal protein S30. Fubi is thought to be a tumor suppressor protein and the FUBI domain may act as a substitute or an inhibitor of ubiquitin or one of ubiquitin's close relatives UCRP, FAT10, and Nedd8.

>cd01798 parkin_N amino-terminal ubiquitin-like of parkin protein

Probab=99.47  E-value=5.2e-14  Score=100.62  Aligned_cols=51  Identities=22%  Similarity=0.455  Sum_probs=49.4

Q ss_pred             CcHHHHHHHHHHHhCCCCCCceEEecCeecCCcchhhhcCCCCCCEEEEec
Q 028093            1 MMIGDLKKAISEKTGLDPQEQKVLFRGKEKEDNEHLDVSGMKDKSKVLLLE   51 (214)
Q Consensus         1 ~Tv~~LK~~l~e~tGipp~~QKLifkGK~L~d~~~L~~~GvkdgSki~Lv~   51 (214)
                      +||++||++|++.+|+|+++|+|+|+|+.|+|+.+|+.|||++||+|||+.
T Consensus        19 ~tV~~lK~~i~~~~gi~~~~q~Li~~G~~L~d~~~l~~~~i~~~stl~l~~   69 (70)
T cd01798          19 TDIKQLKEVVAKRQGVPPDQLRVIFAGKELRNTTTIQECDLGQQSILHAVR   69 (70)
T ss_pred             ChHHHHHHHHHHHHCCCHHHeEEEECCeECCCCCcHHHcCCCCCCEEEEEe
Confidence            589999999999999999999999999999999999999999999999985

parkin_N parkin protein is a RING-type E3 ubiquitin ligase with an amino-terminal ubiquitin-like (Ubl) domain and an RBR signature consisting of two RING finger domains separated by an IBR/DRIL domain. Naturally occurring mutations in parkin are thought to cause the disease AR_JP (autosomal-recessive juvenile parkinsonism). Parkin binds the Rpn10 subunit of 26S proteasomes through its Ubl domain.

>cd01813 UBP_N UBP ubiquitin processing protease

Probab=99.47  E-value=4.8e-14  Score=103.11  Aligned_cols=52  Identities=31%  Similarity=0.473  Sum_probs=49.7

Q ss_pred             CcHHHHHHHHHHHhCCCCCCceEEe---cCeecCCcchhhhcCCCCCCEEEEecc
Q 028093            1 MMIGDLKKAISEKTGLDPQEQKVLF---RGKEKEDNEHLDVSGMKDKSKVLLLEE   52 (214)
Q Consensus         1 ~Tv~~LK~~l~e~tGipp~~QKLif---kGK~L~d~~~L~~~GvkdgSki~Lv~~   52 (214)
                      .||++||++|++.|||||++|||||   +||.++|+.+|+.|||++|++||||+.
T Consensus        20 ~Tv~~lK~~i~~~tgvp~~~QKLi~~~~~Gk~l~D~~~L~~~~i~~g~~i~lmGs   74 (74)
T cd01813          20 DTVLDLKQFIKTLTGVLPERQKLLGLKVKGKPAEDDVKISALKLKPNTKIMMMGT   74 (74)
T ss_pred             CCHHHHHHHHHHHHCCCHHHEEEEeecccCCcCCCCcCHHHcCCCCCCEEEEEeC
Confidence            4899999999999999999999996   999999999999999999999999984

The UBP (ubiquitin processing protease) domain (also referred to as USP which stands for "ubiquitin-specific protease") is present at in a large family of cysteine proteases that specifically cleave ubiquitin conjugates. This family includes Rpn11, UBP6 (USP14), USP7 (HAUSP). This domain is closely related to the amino-terminal ubiquitin-like domain of BAG1 (Bcl2-associated anthanogene1) protein and is found only in eukaryotes.

>cd01815 BMSC_UbP_N Ubiquitin-like domain of BMSC-UbP

Probab=99.47  E-value=6e-14  Score=103.92  Aligned_cols=51  Identities=24%  Similarity=0.470  Sum_probs=47.7

Q ss_pred             CcHHHHHHHHHHHh--CCC-CCCceEEecCeecCCcchhhhcCCCCCCEEEEec
Q 028093            1 MMIGDLKKAISEKT--GLD-PQEQKVLFRGKEKEDNEHLDVSGMKDKSKVLLLE   51 (214)
Q Consensus         1 ~Tv~~LK~~l~e~t--Gip-p~~QKLifkGK~L~d~~~L~~~GvkdgSki~Lv~   51 (214)
                      .||++||++|++++  |++ +++|||||+||.|+|+.+|++|||++|++|||+.
T Consensus        21 ~TV~~LK~kI~~~~~egi~~~dqQrLIy~GKiL~D~~TL~dygI~~gstlhLv~   74 (75)
T cd01815          21 YQVSTLKQLIAAQLPDSLPDPELIDLIHCGRKLKDDQTLDFYGIQSGSTIHILR   74 (75)
T ss_pred             CcHHHHHHHHHHhhccCCCChHHeEEEeCCcCCCCCCcHHHcCCCCCCEEEEEe
Confidence            48999999999996  575 9999999999999999999999999999999985

BMSC_UbP (bone marrow stromal cell-derived ubiquitin-like protein) has an N-terminal ubiquitin-like (UBQ) domain and a C-terminal ubiquitin-associated (UBA) domain, a domain architecture similar to those of the UBIN, Chap1, and ubiquilin proteins. This CD represents the N-terminal ubiquitin-like domain.

>cd01794 DC_UbP_C dendritic cell derived ubiquitin-like protein

Probab=99.46  E-value=6e-14  Score=101.60  Aligned_cols=51  Identities=27%  Similarity=0.437  Sum_probs=49.4

Q ss_pred             CcHHHHHHHHHHHhCCCCCCceEEecCeecCCcchhhhcCCCCCCEEEEec
Q 028093            1 MMIGDLKKAISEKTGLDPQEQKVLFRGKEKEDNEHLDVSGMKDKSKVLLLE   51 (214)
Q Consensus         1 ~Tv~~LK~~l~e~tGipp~~QKLifkGK~L~d~~~L~~~GvkdgSki~Lv~   51 (214)
                      +||++||.+|++..|+|+++|||+|+|+.|+|+.+|.+|||++|++|||+.
T Consensus        19 ~TV~~lK~~I~~~~gi~~~~q~Li~~G~~L~D~~~l~~~~i~~~~tv~~~~   69 (70)
T cd01794          19 DTVGQLKKQLQAAEGVDPCCQRWFFSGKLLTDKTRLQETKIQKDYVVQVIV   69 (70)
T ss_pred             ChHHHHHHHHHHHhCCCHHHeEEEECCeECCCCCCHHHcCCCCCCEEEEEe
Confidence            589999999999999999999999999999999999999999999999985

DC_UbP (dendritic cell derived ubiquitin-like protein) is a ubiquitin-like protein from human dendritic cells that is expressed in the mitochondrion. The ubiquitin-like domain of this protein is found at the C-terminus and lacks the canonical gly-gly motif of ubiquitin required for ubiquitinization. DC_UbP is expressed in tumor cells but not in normal human adult tissue suggesting a role for DC_UbP in tumorogenesis.

>cd01812 BAG1_N Ubiquitin-like domain of BAG1

Probab=99.46  E-value=7.1e-14  Score=99.06  Aligned_cols=52  Identities=54%  Similarity=0.947  Sum_probs=50.0

Q ss_pred             CcHHHHHHHHHHHhCCCCCCceEEecCeecCCcchhhhcCCCCCCEEEEecc
Q 028093            1 MMIGDLKKAISEKTGLDPQEQKVLFRGKEKEDNEHLDVSGMKDKSKVLLLEE   52 (214)
Q Consensus         1 ~Tv~~LK~~l~e~tGipp~~QKLifkGK~L~d~~~L~~~GvkdgSki~Lv~~   52 (214)
                      .||++||++|++.+|+|+++|||+|+|+.|+|+.+|++|||++|++|+++++
T Consensus        20 ~tv~~lK~~i~~~~gi~~~~q~L~~~g~~l~d~~~L~~~~i~~g~~l~v~~~   71 (71)
T cd01812          20 ATFGDLKKMLAPVTGVEPRDQKLIFKGKERDDAETLDMSGVKDGSKVMLLED   71 (71)
T ss_pred             CcHHHHHHHHHHhhCCChHHeEEeeCCcccCccCcHHHcCCCCCCEEEEecC
Confidence            4899999999999999999999999999999999999999999999999975

BAG1_N N-terminal ubiquitin-like (Ubl) domain of the BAG1 protein. This domain occurs together with the BAG domain and is closely related to the Ubl domain of a family of deubiquitinases that includes Rpn11, UBP6 (USP14), USP7 (HAUSP).

>cd01791 Ubl5 UBL5 ubiquitin-like modifier

Probab=99.43  E-value=1.5e-13  Score=100.62  Aligned_cols=50  Identities=28%  Similarity=0.259  Sum_probs=48.2

Q ss_pred             CcHHHHHHHHHHHhCCCCCCceEEecCeecCCcchhhhcCCCCCCEEEEe
Q 028093            1 MMIGDLKKAISEKTGLDPQEQKVLFRGKEKEDNEHLDVSGMKDKSKVLLL   50 (214)
Q Consensus         1 ~Tv~~LK~~l~e~tGipp~~QKLifkGK~L~d~~~L~~~GvkdgSki~Lv   50 (214)
                      .||++||.+|++..|+||++|||||+|+.|+|+.+|.+|||++||+|||.
T Consensus        22 ~TV~~LK~~I~~~~~~~~~~qrLi~~Gk~L~D~~tL~~ygi~~~stv~l~   71 (73)
T cd01791          22 DTIGDLKKLIAAQTGTRPEKIVLKKWYTIFKDHISLGDYEIHDGMNLELY   71 (73)
T ss_pred             CcHHHHHHHHHHHhCCChHHEEEEeCCcCCCCCCCHHHcCCCCCCEEEEE
Confidence            48999999999999999999999999999999999999999999999985

UBL5 (also known as HUB1) is a ubiquitin-like modifier that is both widely expressed and highly phylogenetically conserved. At the C-terminal end of the ubiquitin-like fold of UBL5 is a di-tyrosine motif followed by a single variable residue instead of the characteristic di-glycine found in all other ubiquitin-like modifiers. ULB5 interacts with a cyclin-like kinase called CLK4 but not with other cyclin-like kinase family members.

>cd01796 DDI1_N DNA damage inducible protein 1 ubiquitin-like domain

Probab=99.41  E-value=2.2e-13  Score=98.38  Aligned_cols=50  Identities=26%  Similarity=0.504  Sum_probs=47.0

Q ss_pred             CcHHHHHHHHHHHhCCCCCCceEEecCeecCCc-chhhhcCCCCCCEEEEe
Q 028093            1 MMIGDLKKAISEKTGLDPQEQKVLFRGKEKEDN-EHLDVSGMKDKSKVLLL   50 (214)
Q Consensus         1 ~Tv~~LK~~l~e~tGipp~~QKLifkGK~L~d~-~~L~~~GvkdgSki~Lv   50 (214)
                      +||++||.+|++.+|+|+++|||+|+||.|+|+ .+|+.|||++||+|||-
T Consensus        20 ~TV~~lK~~I~~~~gip~~~q~Li~~Gk~L~D~~~~L~~~gi~~~~~l~l~   70 (71)
T cd01796          20 LELENFKALCEAESGIPASQQQLIYNGRELVDNKRLLALYGVKDGDLVVLR   70 (71)
T ss_pred             CCHHHHHHHHHHHhCCCHHHeEEEECCeEccCCcccHHHcCCCCCCEEEEe
Confidence            589999999999999999999999999999776 78999999999999973

DDI1_N DDI1 (DNA damage inducible protein 1) has an amino-terminal ubiquitin-like domain, an retroviral protease-like (RVP-like) domain, and a UBA (ubiquitin-associated) domain. This CD represents the amino-terminal ubiquitin-like domain of DDI1.

>cd01808 hPLIC_N Ubiquitin-like domain of hPLIC-1 and hPLIC2

Probab=99.39  E-value=3.9e-13  Score=96.45  Aligned_cols=51  Identities=27%  Similarity=0.394  Sum_probs=48.9

Q ss_pred             CcHHHHHHHHHHHhCCCCCCceEEecCeecCCcchhhhcCCCCCCEEEEec
Q 028093            1 MMIGDLKKAISEKTGLDPQEQKVLFRGKEKEDNEHLDVSGMKDKSKVLLLE   51 (214)
Q Consensus         1 ~Tv~~LK~~l~e~tGipp~~QKLifkGK~L~d~~~L~~~GvkdgSki~Lv~   51 (214)
                      .||++||++|++.+|+|+++|||+|+||.|+|+.+|++|||++||+|||+-
T Consensus        20 ~TV~~lK~~I~~~~~i~~~~~~Li~~Gk~L~d~~tL~~~~i~~~stl~l~~   70 (71)
T cd01808          20 ASVKDFKEAVSKKFKANQEQLVLIFAGKILKDTDTLTQHNIKDGLTVHLVI   70 (71)
T ss_pred             ChHHHHHHHHHHHhCCCHHHEEEEECCeEcCCCCcHHHcCCCCCCEEEEEE
Confidence            489999999999999999999999999999999999999999999999974

hPLIC-1 and hPLIC-2 (human homologs of the yeast ubiquitin-like Dsk2 protein) are type2 UBL's (ubiquitin-like) proteins that are thought to serve as adaptors that link the ubiquitination machinery to the proteasome. The hPLIC's have an N-terminal UBL domain that binds the S5a subunit of the proteasome and a C-terminal UBA (ubiquitin-associated) domain that binds a ubiquitylated protein.

>cd01810 ISG15_repeat2 ISG15 ubiquitin-like protein, second repeat of 2

Probab=99.39  E-value=4.2e-13  Score=97.12  Aligned_cols=52  Identities=21%  Similarity=0.358  Sum_probs=49.6

Q ss_pred             CcHHHHHHHHHHHhCCCCCCceEEecCeecCCcchhhhcCCCCCCEEEEecc
Q 028093            1 MMIGDLKKAISEKTGLDPQEQKVLFRGKEKEDNEHLDVSGMKDKSKVLLLEE   52 (214)
Q Consensus         1 ~Tv~~LK~~l~e~tGipp~~QKLifkGK~L~d~~~L~~~GvkdgSki~Lv~~   52 (214)
                      .||.+||++|++.+|+|+++|+|+|+|+.|+|+.+|++|||+++++|+|+-.
T Consensus        19 ~tV~~lK~~I~~~~gi~~~~q~L~~~G~~L~D~~tL~~~~i~~~~tl~l~~~   70 (74)
T cd01810          19 QTVATLKQQVSQRERVQADQFWLSFEGRPMEDEHPLGEYGLKPGCTVFMNLR   70 (74)
T ss_pred             ChHHHHHHHHHHHhCCCHHHeEEEECCEECCCCCCHHHcCCCCCCEEEEEEE
Confidence            4899999999999999999999999999999999999999999999999853

ISG15 is a ubiquitin-like protein containing two ubiquitin homology domains and becomes conjugated to a variety of proteins when cells are treated with type I interferon or lipopolysaccharide. Although ISG15 has properties similar to those of other ubiquitin-like molecules, it is a unique member of the ubiquitin-like superfamily, whose expression and conjugation to target proteins are tightly regulated by specific signaling pathways, indicating it may have specialized functions in the immune system.

>cd01809 Scythe_N Ubiquitin-like domain of Scythe protein

Probab=99.39  E-value=5e-13  Score=94.56  Aligned_cols=51  Identities=25%  Similarity=0.518  Sum_probs=49.0

Q ss_pred             CcHHHHHHHHHHHhCCCCCCceEEecCeecCCcchhhhcCCCCCCEEEEec
Q 028093            1 MMIGDLKKAISEKTGLDPQEQKVLFRGKEKEDNEHLDVSGMKDKSKVLLLE   51 (214)
Q Consensus         1 ~Tv~~LK~~l~e~tGipp~~QKLifkGK~L~d~~~L~~~GvkdgSki~Lv~   51 (214)
                      .||++||++|++.+|+|++.|||+|+|+.|+|+.+|+.||+++||+|||+.
T Consensus        21 ~tv~~lK~~i~~~~gi~~~~q~L~~~g~~L~d~~~L~~~~i~~~~~l~l~~   71 (72)
T cd01809          21 ITVLDLKEKIAEEVGIPVEQQRLIYSGRVLKDDETLSEYKVEDGHTIHLVK   71 (72)
T ss_pred             CcHHHHHHHHHHHHCcCHHHeEEEECCEECCCcCcHHHCCCCCCCEEEEEe
Confidence            489999999999999999999999999999999999999999999999974

Scythe protein (also known as Bat3) is an apoptotic regulator that is highly conserved in eukaryotes and contains a ubiquitin-like domain near its N-terminus. Scythe binds reaper, a potent apoptotic inducer, and Scythe/Reaper are thought to signal apoptosis, in part through regulating the folding and activity of apoptotic signaling molecules.

>cd01804 midnolin_N Ubiquitin-like domain of midnolin

Probab=99.38  E-value=4.6e-13  Score=98.43  Aligned_cols=51  Identities=25%  Similarity=0.335  Sum_probs=48.6

Q ss_pred             CcHHHHHHHHHHHhCCCCCCceEEecCeecCCcchhhhcCCCCCCEEEEecc
Q 028093            1 MMIGDLKKAISEKTGLDPQEQKVLFRGKEKEDNEHLDVSGMKDKSKVLLLEE   52 (214)
Q Consensus         1 ~Tv~~LK~~l~e~tGipp~~QKLifkGK~L~d~~~L~~~GvkdgSki~Lv~~   52 (214)
                      .||++||+.|++.+|+|+++|||+|+||.|+|+ +|.+|||++|++|+|+..
T Consensus        22 ~TV~~LK~~I~~~~~~~~~~qrL~~~Gk~L~d~-~L~~~gi~~~~~i~l~~~   72 (78)
T cd01804          22 ETVEGLKKRISQRLKVPKERLALLHRETRLSSG-KLQDLGLGDGSKLTLVPT   72 (78)
T ss_pred             CHHHHHHHHHHHHhCCChHHEEEEECCcCCCCC-cHHHcCCCCCCEEEEEee
Confidence            489999999999999999999999999999988 999999999999999875

midnolin_N Midnolin (midbrain nucleolar protein) is expressed in the nucleolus and is thought to regulate genes involved in neurogenesis. Midnolin contains an amino-terminal ubiquitin-like domain.

>cd01800 SF3a120_C Ubiquitin-like domain of Mammalian splicing factor SF3a_120

Probab=99.38  E-value=7.2e-13  Score=96.62  Aligned_cols=53  Identities=23%  Similarity=0.262  Sum_probs=50.5

Q ss_pred             CcHHHHHHHHHHHhCCCCCCceEEecCeecCCcchhhhcCCCCCCEEEEeccc
Q 028093            1 MMIGDLKKAISEKTGLDPQEQKVLFRGKEKEDNEHLDVSGMKDKSKVLLLEEL   53 (214)
Q Consensus         1 ~Tv~~LK~~l~e~tGipp~~QKLifkGK~L~d~~~L~~~GvkdgSki~Lv~~p   53 (214)
                      +||++||++|++.+|||++.|||+|+|+.|+|+.+|+.|||++|++|+|+...
T Consensus        18 ~TV~~lK~~i~~~~gip~~~q~L~~~G~~L~d~~tL~~~~i~~g~~l~v~~~~   70 (76)
T cd01800          18 DPVSVLKVKIHEETGMPAGKQKLQYEGIFIKDSNSLAYYNLANGTIIHLQLKE   70 (76)
T ss_pred             CcHHHHHHHHHHHHCCCHHHEEEEECCEEcCCCCcHHHcCCCCCCEEEEEEec
Confidence            58999999999999999999999999999999999999999999999999753

SF3a120_C Mammalian splicing factor SF3a consists of three subunits of 60, 66, and 120 kDa and functions early during pre-mRNA splicing by converting the U2 snRNP to its active form. The 120kDa subunit (SF3a120) has a carboxy-terminal ubiquitin-like domain and two SWAP (suppressor-of-white-apricot) domains, referred to collectively as the SURP module, at its amino-terminus.

>cd01805 RAD23_N Ubiquitin-like domain of RAD23

Probab=99.37  E-value=7.8e-13  Score=95.38  Aligned_cols=52  Identities=27%  Similarity=0.509  Sum_probs=49.8

Q ss_pred             CcHHHHHHHHHHHhCC--CCCCceEEecCeecCCcchhhhcCCCCCCEEEEecc
Q 028093            1 MMIGDLKKAISEKTGL--DPQEQKVLFRGKEKEDNEHLDVSGMKDKSKVLLLEE   52 (214)
Q Consensus         1 ~Tv~~LK~~l~e~tGi--pp~~QKLifkGK~L~d~~~L~~~GvkdgSki~Lv~~   52 (214)
                      .||++||++|++.+|+  |+++|||+|+|+.|+|+.+|++|||++||+|+++..
T Consensus        21 ~TV~~lK~~i~~~~~i~~~~~~q~L~~~G~~L~d~~~L~~~~i~~~~~i~~~~~   74 (77)
T cd01805          21 DTVAELKEKIEEEKGCDYPPEQQKLIYSGKILKDDTTLEEYKIDEKDFVVVMVS   74 (77)
T ss_pred             CcHHHHHHHHHHhhCCCCChhHeEEEECCEEccCCCCHHHcCCCCCCEEEEEEe
Confidence            4899999999999999  999999999999999999999999999999999875

RAD23 belongs to a family of adaptor molecules having affinity for both the proteasome and ubiquitinylated proteins and thought to shuttle these ubiquitinylated proteins to the proteasome for destruction. RAD23 interacts with ubiquitin through its C-terminal ubiquitin-associated domains (UBA) and with the proteasome through its N-terminal ubiquitin-like domain (UBL).

>PTZ00044 ubiquitin; Provisional

Probab=99.36  E-value=7.9e-13  Score=95.28  Aligned_cols=52  Identities=21%  Similarity=0.388  Sum_probs=50.0

Q ss_pred             CcHHHHHHHHHHHhCCCCCCceEEecCeecCCcchhhhcCCCCCCEEEEecc
Q 028093            1 MMIGDLKKAISEKTGLDPQEQKVLFRGKEKEDNEHLDVSGMKDKSKVLLLEE   52 (214)
Q Consensus         1 ~Tv~~LK~~l~e~tGipp~~QKLifkGK~L~d~~~L~~~GvkdgSki~Lv~~   52 (214)
                      +||.+||++|++.+|+|+++|||+|+|+.|+|+.+|+.|||++|++|||+..
T Consensus        21 ~tv~~lK~~i~~~~gi~~~~q~L~~~g~~L~d~~~l~~~~i~~~~~i~l~~~   72 (76)
T PTZ00044         21 NTVQQVKMALQEKEGIDVKQIRLIYSGKQMSDDLKLSDYKVVPGSTIHMVLQ   72 (76)
T ss_pred             CcHHHHHHHHHHHHCCCHHHeEEEECCEEccCCCcHHHcCCCCCCEEEEEEE
Confidence            5899999999999999999999999999999999999999999999999864

>cd01806 Nedd8 Nebb8-like ubiquitin protein

Probab=99.33  E-value=2e-12  Score=92.36  Aligned_cols=52  Identities=23%  Similarity=0.434  Sum_probs=49.7

Q ss_pred             CcHHHHHHHHHHHhCCCCCCceEEecCeecCCcchhhhcCCCCCCEEEEecc
Q 028093            1 MMIGDLKKAISEKTGLDPQEQKVLFRGKEKEDNEHLDVSGMKDKSKVLLLEE   52 (214)
Q Consensus         1 ~Tv~~LK~~l~e~tGipp~~QKLifkGK~L~d~~~L~~~GvkdgSki~Lv~~   52 (214)
                      .||++||++|++.+|+||+.|||+|.|+.|+|+.+|+.|||++|++|||+-.
T Consensus        21 ~tv~~lK~~i~~~~g~~~~~qrL~~~g~~L~d~~tl~~~~i~~g~~i~l~~~   72 (76)
T cd01806          21 DKVERIKERVEEKEGIPPQQQRLIYSGKQMNDDKTAADYKLEGGSVLHLVLA   72 (76)
T ss_pred             CCHHHHHHHHhHhhCCChhhEEEEECCeEccCCCCHHHcCCCCCCEEEEEEE
Confidence            4899999999999999999999999999999999999999999999999864

Nedd8 (also known as Rub1) has a single conserved ubiquitin-like domain that is part of a protein modification pathway similar to that of ubiquitin. Nedd8 modifies a family of molecular scaffold proteins called cullins that are responsible for assembling the ROC1/Rbx1 RING-based E3 ubiquitin ligases, of which several play a direct role in tumorigenesis.

>cd01803 Ubiquitin Ubiquitin

Probab=99.32  E-value=2.2e-12  Score=92.15  Aligned_cols=52  Identities=29%  Similarity=0.519  Sum_probs=49.9

Q ss_pred             CcHHHHHHHHHHHhCCCCCCceEEecCeecCCcchhhhcCCCCCCEEEEecc
Q 028093            1 MMIGDLKKAISEKTGLDPQEQKVLFRGKEKEDNEHLDVSGMKDKSKVLLLEE   52 (214)
Q Consensus         1 ~Tv~~LK~~l~e~tGipp~~QKLifkGK~L~d~~~L~~~GvkdgSki~Lv~~   52 (214)
                      .||++||++|++.+|+|++.|||+|+|+.|+|+.+|.+|||++|++|+|+-.
T Consensus        21 ~tV~~lK~~i~~~~g~~~~~q~L~~~g~~L~d~~~L~~~~i~~~~~i~l~~~   72 (76)
T cd01803          21 DTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLR   72 (76)
T ss_pred             CcHHHHHHHHHHHhCCCHHHeEEEECCEECCCCCcHHHcCCCCCCEEEEEEE
Confidence            4899999999999999999999999999999999999999999999999864

Ubiquitin (includes Ubq/RPL40e and Ubq/RPS27a fusions as well as homopolymeric multiubiquitin protein chains)

>cd01802 AN1_N ubiquitin-like domain of AN1

Probab=99.32  E-value=2.1e-12  Score=100.26  Aligned_cols=52  Identities=17%  Similarity=0.245  Sum_probs=49.8

Q ss_pred             CcHHHHHHHHHHHhCCCCCCceEEecCeecCCcchhhhcCCCCCCEEEEecc
Q 028093            1 MMIGDLKKAISEKTGLDPQEQKVLFRGKEKEDNEHLDVSGMKDKSKVLLLEE   52 (214)
Q Consensus         1 ~Tv~~LK~~l~e~tGipp~~QKLifkGK~L~d~~~L~~~GvkdgSki~Lv~~   52 (214)
                      +||++||++|++..|+|+++|||+|+|+.|+|+.+|+.|||++||+|+|+..
T Consensus        48 ~TV~~lK~kI~~~~gip~~~QrLi~~Gk~L~D~~tL~dy~I~~~stL~l~~~   99 (103)
T cd01802          48 ETVISVKAKIQRLEGIPVAQQHLIWNNMELEDEYCLNDYNISEGCTLKLVLA   99 (103)
T ss_pred             CcHHHHHHHHHHHhCCChHHEEEEECCEECCCCCcHHHcCCCCCCEEEEEEe
Confidence            5899999999999999999999999999999999999999999999999863

AN1 (also known as ANUBL1 and RSD-7) is ubiquitin-like protein with a testis-specific expression in rats that has an N-terminal ubiquitin-like domain and a C-terminal zinc-binding domain. Unlike ubiquitin polyproteins and most ubiquitin fusion proteins, the N-terminal ubiquitin-like domain of An1 does not undergo proteolytic processing. The function of AN1 is unknown.

>cd01792 ISG15_repeat1 ISG15 ubiquitin-like protein, first repeat of 2

Probab=99.30  E-value=2.4e-12  Score=94.72  Aligned_cols=53  Identities=28%  Similarity=0.382  Sum_probs=50.5

Q ss_pred             CcHHHHHHHHHHHhCCCCCCceE--EecCeecCCcchhhhcCCCCCCEEEEeccc
Q 028093            1 MMIGDLKKAISEKTGLDPQEQKV--LFRGKEKEDNEHLDVSGMKDKSKVLLLEEL   53 (214)
Q Consensus         1 ~Tv~~LK~~l~e~tGipp~~QKL--ifkGK~L~d~~~L~~~GvkdgSki~Lv~~p   53 (214)
                      .||++||++|++.+|+|+++|||  +|+|+.|+|+.+|+.|||++|++|+|+.+.
T Consensus        23 ~TV~~lK~~I~~~~~i~~~~qrL~~~~~G~~L~D~~tL~~~gi~~gs~l~l~~~~   77 (80)
T cd01792          23 MTVSELKQQIAQKIGVPAFQQRLAHLDSREVLQDGVPLVSQGLGPGSTVLLVVQN   77 (80)
T ss_pred             CcHHHHHHHHHHHhCCCHHHEEEEeccCCCCCCCCCCHHHcCCCCCCEEEEEEEc
Confidence            48999999999999999999999  999999999999999999999999999864

ISG15 is a ubiquitin-like protein containing two ubiquitin homology domains that becomes conjugated to a variety of proteins when cells are treated with type I interferon or lipopolysaccharide. Although ISG15 has properties similar to those of other ubiquitin-like molecules, it is a unique member of the ubiquitin-like superfamily, whose expression and conjugation to target proteins are tightly regulated by specific signaling pathways, indicating it may have specialized functions in the immune system.

>cd01790 Herp_N Homocysteine-responsive endoplasmic reticulum-resident ubiquitin-like domain protein

Probab=99.28  E-value=3.4e-12  Score=95.33  Aligned_cols=51  Identities=24%  Similarity=0.245  Sum_probs=46.8

Q ss_pred             CcHHHHHHHHHHHhC--CCCCCceEEecCeecCCcchhhhcC--CCCCCEEEEec
Q 028093            1 MMIGDLKKAISEKTG--LDPQEQKVLFRGKEKEDNEHLDVSG--MKDKSKVLLLE   51 (214)
Q Consensus         1 ~Tv~~LK~~l~e~tG--ipp~~QKLifkGK~L~d~~~L~~~G--vkdgSki~Lv~   51 (214)
                      .||++||++|++..+  .|+++|||||+||.|+|+.+|.+|+  +.+|.+||||-
T Consensus        24 ~TV~~lK~~i~~~~~~~~~~~~QrLIy~GKiLkD~~tL~~~~~~~~~~~tiHLV~   78 (79)
T cd01790          24 WTVGELKTHLSRVYPSKPLEQDQRLIYSGKLLPDHLKLRDVLRKQDEYHMVHLVC   78 (79)
T ss_pred             ChHHHHHHHHHHhcCCCCChhHeEEEEcCeeccchhhHHHHhhcccCCceEEEEe
Confidence            489999999999885  4579999999999999999999997  99999999983

Herp (Homocysteine-responsive endoplasmic reticulum-resident ubiquitin-like domain protein) , is an integral membrane protein that is induced by the endoplasmic reticulum (ER) stress response pathway and is involved in improving the balance of folding capacity and protein loads in the ER. Herp has an N-terminal ubiquitin-like domain that is involved in Herp degradation, but is not necessary for its enhancement of amyloid beta-protein generation.

>cd01799 Hoil1_N Ubiquitin-like domain of HOIL1

Probab=99.18  E-value=2.2e-11  Score=89.51  Aligned_cols=49  Identities=24%  Similarity=0.413  Sum_probs=46.1

Q ss_pred             CcHHHHHHHHHHHhCCCCCCceEEecCeec-CCcchhhhcCCC-CCCEEEEe
Q 028093            1 MMIGDLKKAISEKTGLDPQEQKVLFRGKEK-EDNEHLDVSGMK-DKSKVLLL   50 (214)
Q Consensus         1 ~Tv~~LK~~l~e~tGipp~~QKLifkGK~L-~d~~~L~~~Gvk-dgSki~Lv   50 (214)
                      +||++||.+|++.+||||++||| |.|+.| +|+.+|+.|||+ +|+++||.
T Consensus        23 ~TV~~lK~kI~~~~gip~~~QrL-~~G~~L~dD~~tL~~ygi~~~g~~~~l~   73 (75)
T cd01799          23 MTVAQLKDKVFLDYGFPPAVQRW-VIGQRLARDQETLYSHGIRTNGDSAFLY   73 (75)
T ss_pred             CcHHHHHHHHHHHHCcCHHHEEE-EcCCeeCCCcCCHHHcCCCCCCCEEEEE
Confidence            58999999999999999999999 999999 588999999999 88999984

HOIL1_N HOIL-1 (heme-oxidized IRP2 ubiquitin ligase-1) is an E3 ubiquitin-protein ligase that recognizes heme-oxidized IRP2 (iron regulatory protein2) and is thought to affect the turnover of oxidatively damaged proteins. Hoil-1 has an amino-terminal ubiquitin-like domain as well as an RBR signature consisting of two RING finger domains separated by an IBR/DRIL domain.

>cd01769 UBL Ubiquitin-like domain of UBL

Probab=99.18  E-value=3.6e-11  Score=83.31  Aligned_cols=51  Identities=29%  Similarity=0.547  Sum_probs=49.1

Q ss_pred             CcHHHHHHHHHHHhCCCCCCceEEecCeecCCcchhhhcCCCCCCEEEEec
Q 028093            1 MMIGDLKKAISEKTGLDPQEQKVLFRGKEKEDNEHLDVSGMKDKSKVLLLE   51 (214)
Q Consensus         1 ~Tv~~LK~~l~e~tGipp~~QKLifkGK~L~d~~~L~~~GvkdgSki~Lv~   51 (214)
                      +||++||++|+..+|+|++.|+|+|+|+.|+|..+|..||+++|+.|+++.
T Consensus        18 ~ti~~lK~~i~~~~~~~~~~~~l~~~g~~l~d~~~l~~~~v~~~~~i~v~~   68 (69)
T cd01769          18 DTVAELKAKIAAKEGVPPEQQRLIYAGKILKDDKTLSDYGIQDGSTLHLVL   68 (69)
T ss_pred             ChHHHHHHHHHHHHCcChHHEEEEECCcCCCCcCCHHHCCCCCCCEEEEEE
Confidence            589999999999999999999999999999999999999999999999985

UBLs function by remodeling the surface of their target proteins, changing their target's half-life, enzymatic activity, protein-protein interactions, subcellular localization or other properties. At least 10 different ubiquitin-like modifications exist in mammals, and attachment of different ubls to a target leads to different biological consequences. Ubl-conjugation cascades are initiated by activating enzymes, which also coordinate the ubls with their downstream pathways.

>smart00213 UBQ Ubiquitin homologues

Probab=99.14  E-value=4.3e-11  Score=81.97  Aligned_cols=45  Identities=31%  Similarity=0.544  Sum_probs=43.3

Q ss_pred             CcHHHHHHHHHHHhCCCCCCceEEecCeecCCcchhhhcCCCCCC
Q 028093            1 MMIGDLKKAISEKTGLDPQEQKVLFRGKEKEDNEHLDVSGMKDKS   45 (214)
Q Consensus         1 ~Tv~~LK~~l~e~tGipp~~QKLifkGK~L~d~~~L~~~GvkdgS   45 (214)
                      +||++||.+|+..+|+|++.|||+|+|+.|+|+.+|++|||++||
T Consensus        20 ~tv~~lk~~i~~~~~~~~~~~~L~~~g~~L~d~~tL~~~~i~~~~   64 (64)
T smart00213       20 DTVSELKEKIAELTGIPVEQQRLIYKGKVLEDDRTLADYNIQDGS   64 (64)
T ss_pred             CcHHHHHHHHHHHHCCCHHHEEEEECCEECCCCCCHHHcCCcCCC
Confidence            489999999999999999999999999999999999999999986

Ubiquitin-mediated proteolysis is involved in the regulated turnover of proteins required for controlling cell cycle progression

>cd01814 NTGP5 Ubiquitin-like NTGP5 and ATGP4

Probab=99.05  E-value=2.4e-10  Score=90.63  Aligned_cols=59  Identities=17%  Similarity=0.134  Sum_probs=52.5

Q ss_pred             CcHHHHHHHHH-----HHhCCC--CCCceEEecCeecCCcchhhhcC------CCCCCEEEEeccccccccC
Q 028093            1 MMIGDLKKAIS-----EKTGLD--PQEQKVLFRGKEKEDNEHLDVSG------MKDKSKVLLLEELTNKEKK   59 (214)
Q Consensus         1 ~Tv~~LK~~l~-----e~tGip--p~~QKLifkGK~L~d~~~L~~~G------vkdgSki~Lv~~p~s~e~r   59 (214)
                      .||++||+.|+     +++|+|  +++|||||.||.|+|+.+|.+|+      +...+++||+..|...+++
T Consensus        26 dTV~~lKekI~~~~p~~ke~~P~~~~~qKLIysGKiLeD~~TL~d~~~p~g~~~~~~~TmHvvlr~~~~~~~   97 (113)
T cd01814          26 TTVDFLKERVVSQWPKDKEVGPKTVNEVKLISAGKILENSKTVGECRSPVGDIAGGVITMHVVVQPPLADKK   97 (113)
T ss_pred             hHHHHHHHHHHHhcccccccCCCCHHHeEEEeCCeecCCCCcHHHhCCcccccCCCceEEEEEecCCCCCcc
Confidence            48999999999     666777  99999999999999999999999      8888999999987766554

NTGP5 and ATGP4 are plant-specific isoprenylated GTP-binding proteins with a single fold that resembles ubiquitin. The function of these proteins is unknown.

>cd01795 USP48_C USP ubiquitin-specific protease

Probab=99.05  E-value=3.2e-10  Score=88.41  Aligned_cols=52  Identities=25%  Similarity=0.339  Sum_probs=49.8

Q ss_pred             CcHHHHHHHHHHHhCCCCCCceEEecCeec-CCcchhhhcCCCCCCEEEEecc
Q 028093            1 MMIGDLKKAISEKTGLDPQEQKVLFRGKEK-EDNEHLDVSGMKDKSKVLLLEE   52 (214)
Q Consensus         1 ~Tv~~LK~~l~e~tGipp~~QKLifkGK~L-~d~~~L~~~GvkdgSki~Lv~~   52 (214)
                      .||++||.+|.+..|+||.+|+|+|.|+.| ||..+|++|||-.||.|+|..+
T Consensus        25 ~TVg~LK~lImQ~f~V~P~dQkL~~dG~~L~DDsrTLssyGv~sgSvl~Llid   77 (107)
T cd01795          25 QTLKELKIQIMHAFSVAPFDQNLSIDGKILSDDCATLGTLGVIPESVILLKAD   77 (107)
T ss_pred             ccHHHHHHHHHHHhcCCcccceeeecCceeccCCccHHhcCCCCCCEEEEEec
Confidence            489999999999999999999999999999 8999999999999999999874

The USP (ubiquitin-specific protease) family is one of at least seven deubiquitylating enzyme (DUB) families capable of deconjugating ubiquitin and ubiquitin-like adducts. While the USP's have a conserved catalytic core domain, they differ in their domain architectures. This subfamily, which includes USP31, and USP48, has a carboxy-terminal ubiquitin-like domain in addition to a DUSP (domain of ubiquitin-specific proteases) domain,

>cd01789 Alp11_N Ubiquitin-like domain of Alp11 tubulin-folding cofactor B

Probab=99.02  E-value=4.8e-10  Score=83.73  Aligned_cols=52  Identities=21%  Similarity=0.424  Sum_probs=48.3

Q ss_pred             CcHHHHHHHHHHHhCCCCCCceE-EecCe-----ec-CCcchhhhcCCCCCCEEEEecc
Q 028093            1 MMIGDLKKAISEKTGLDPQEQKV-LFRGK-----EK-EDNEHLDVSGMKDKSKVLLLEE   52 (214)
Q Consensus         1 ~Tv~~LK~~l~e~tGipp~~QKL-ifkGK-----~L-~d~~~L~~~GvkdgSki~Lv~~   52 (214)
                      +||++||.+|+..+|+||+.||| +|.|+     .| +|..+|..||+++|++||++..
T Consensus        23 ~Tv~~lK~kl~~~~G~~~~~mrL~l~~~~~~~~~~l~~d~~~L~~y~~~dg~~IhVvD~   81 (84)
T cd01789          23 LTIAELKKKLELVVGTPASSMRLQLFDGDDKLVSKLDDDDALLGSYPVDDGCRIHVIDV   81 (84)
T ss_pred             CcHHHHHHHHHHHHCCCccceEEEEEcCCCCeEeecCCCccEeeeccCCCCCEEEEEeC
Confidence            58999999999999999999999 68999     56 7899999999999999999874

Alp11, also known as tubulin-folding cofactor B, is one of at least three proteins required for the proper folding of tubulins prior to their incorporation into microtubules. These cofactors are necessary for the biogenesis of microtubules and for cell viability. Alp11 has three domains including an N-terminal ubiquitin-like domain (represented by this CD) which executes the essential function, a central coiled-coil domain necessary for maintenance of cellular alpha-tubulin levels, and a C-terminal CLIP-170 domain is required for efficient binding to alpha-tubulin.

>KOG0010 consensus Ubiquitin-like protein [Posttranslational modification, protein turnover, chaperones; General function prediction only]

Probab=98.96  E-value=4.8e-10  Score=106.91  Aligned_cols=53  Identities=23%  Similarity=0.416  Sum_probs=50.8

Q ss_pred             CcHHHHHHHHHHHhCCCCCCceEEecCeecCCcchhhhcCCCCCCEEEEeccc
Q 028093            1 MMIGDLKKAISEKTGLDPQEQKVLFRGKEKEDNEHLDVSGMKDKSKVLLLEEL   53 (214)
Q Consensus         1 ~Tv~~LK~~l~e~tGipp~~QKLifkGK~L~d~~~L~~~GvkdgSki~Lv~~p   53 (214)
                      +||.+||+.|+...++|+++|+|||.||.|+|+.+|..|||+||.+||||.+.
T Consensus        35 ssV~qlKE~I~~~f~a~~dqlvLIfaGrILKD~dTL~~~gI~Dg~TvHLVik~   87 (493)
T KOG0010|consen   35 SSVLQLKELIAQRFGAPPDQLVLIYAGRILKDDDTLKQYGIQDGHTVHLVIKS   87 (493)
T ss_pred             hHHHHHHHHHHHhcCCChhHeeeeecCccccChhhHHHcCCCCCcEEEEEecc
Confidence            48999999999999999999999999999999999999999999999999863

>cd01763 Sumo Small ubiquitin-related modifier (SUMO)

Probab=98.95  E-value=1.5e-09  Score=81.29  Aligned_cols=51  Identities=25%  Similarity=0.422  Sum_probs=48.9

Q ss_pred             CcHHHHHHHHHHHhCCCCCCceEEecCeecCCcchhhhcCCCCCCEEEEec
Q 028093            1 MMIGDLKKAISEKTGLDPQEQKVLFRGKEKEDNEHLDVSGMKDKSKVLLLE   51 (214)
Q Consensus         1 ~Tv~~LK~~l~e~tGipp~~QKLifkGK~L~d~~~L~~~GvkdgSki~Lv~   51 (214)
                      +||..||.+++++.|+|+++|||+|.|+.|+++.++.+||+++|++|+++-
T Consensus        32 ~~l~~l~~~y~~~~gi~~~~~rf~f~G~~L~~~~T~~~l~m~d~d~I~v~l   82 (87)
T cd01763          32 TPLKKLMEAYCQRQGLSMNSVRFLFDGQRIRDNQTPDDLGMEDGDEIEVML   82 (87)
T ss_pred             CHHHHHHHHHHHHhCCCccceEEEECCeECCCCCCHHHcCCCCCCEEEEEE
Confidence            478999999999999999999999999999999999999999999999974

Small ubiquitin-related modifier (SUMO) proteins are conjugated to numerous intracellular targets and serve to modulate protein interaction, localization, activity or stability. SUMO (also known as "Smt3" and "sentrin" in other organisms) is linked to several different pathways, including nucleocytoplasmic transport. Attachment of SUMO to targets proteins is stimulated by PIAS (Protein inhibitor of activated STATs) proteins which serve as E3-like ligases.

>TIGR00601 rad23 UV excision repair protein Rad23

Probab=98.93  E-value=1e-09  Score=102.41  Aligned_cols=53  Identities=23%  Similarity=0.384  Sum_probs=50.1

Q ss_pred             CcHHHHHHHHHHHhC---CCCCCceEEecCeecCCcchhhhcCCCCCCEEEEeccc
Q 028093            1 MMIGDLKKAISEKTG---LDPQEQKVLFRGKEKEDNEHLDVSGMKDKSKVLLLEEL   53 (214)
Q Consensus         1 ~Tv~~LK~~l~e~tG---ipp~~QKLifkGK~L~d~~~L~~~GvkdgSki~Lv~~p   53 (214)
                      .||.+||++|++.+|   +|+++|||||+||.|+|+.+|..|||++|++|++|...
T Consensus        21 ~TV~dLK~kI~~~~g~~~ip~~~QkLIy~GkiL~Dd~tL~dy~I~e~~~Ivvmv~k   76 (378)
T TIGR00601        21 ETVKELKEKIEAEQGKDAYPVAQQKLIYSGKILSDDKTVREYKIKEKDFVVVMVSK   76 (378)
T ss_pred             ChHHHHHHHHHHhhCCCCCChhHeEEEECCEECCCCCcHHHcCCCCCCEEEEEecc
Confidence            489999999999999   99999999999999999999999999999999998653

All proteins in this family for which functions are known are components of a multiprotein complex used for targeting nucleotide excision repair to specific parts of the genome. In humans, Rad23 complexes with the XPC protein. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).

>KOG0005 consensus Ubiquitin-like protein [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=98.92  E-value=5.7e-10  Score=79.94  Aligned_cols=49  Identities=24%  Similarity=0.491  Sum_probs=46.8

Q ss_pred             cHHHHHHHHHHHhCCCCCCceEEecCeecCCcchhhhcCCCCCCEEEEe
Q 028093            2 MIGDLKKAISEKTGLDPQEQKVLFRGKEKEDNEHLDVSGMKDKSKVLLL   50 (214)
Q Consensus         2 Tv~~LK~~l~e~tGipp~~QKLifkGK~L~d~~~L~~~GvkdgSki~Lv   50 (214)
                      +|..+|+.++++.||||.+|||||.||++.|+.+-..|++.-||.+|++
T Consensus        22 kverIKErvEEkeGIPp~qqrli~~gkqm~DD~tA~~Y~~~~GSVlHlv   70 (70)
T KOG0005|consen   22 KVERIKERVEEKEGIPPQQQRLIYAGKQMNDDKTAAHYNLLGGSVLHLV   70 (70)
T ss_pred             HHHHHHHHhhhhcCCCchhhhhhhccccccccccHHHhhhccceeEeeC
Confidence            5788999999999999999999999999999999999999999999985

>KOG0004 consensus Ubiquitin/40S ribosomal protein S27a fusion [Translation, ribosomal structure and biogenesis]

Probab=98.83  E-value=1.6e-09  Score=90.04  Aligned_cols=51  Identities=29%  Similarity=0.555  Sum_probs=49.0

Q ss_pred             cHHHHHHHHHHHhCCCCCCceEEecCeecCCcchhhhcCCCCCCEEEEecc
Q 028093            2 MIGDLKKAISEKTGLDPQEQKVLFRGKEKEDNEHLDVSGMKDKSKVLLLEE   52 (214)
Q Consensus         2 Tv~~LK~~l~e~tGipp~~QKLifkGK~L~d~~~L~~~GvkdgSki~Lv~~   52 (214)
                      ||..+|..|++.+||||++|||||.|++|+|..+|++|||+..|+|+|+-.
T Consensus        22 ti~~~Kakiq~~egIp~dqqrlifag~qLedgrtlSDY~Iqkestl~l~l~   72 (156)
T KOG0004|consen   22 TIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLR   72 (156)
T ss_pred             cHHHHHHhhhcccCCCchhhhhhhhhcccccCCccccccccccceEEEEEE
Confidence            789999999999999999999999999999999999999999999999853

>PF14560 Ubiquitin_2: Ubiquitin-like domain; PDB: 1WJN_A 2KJ6_A 2KJR_A 1V6E_A 1T0Y_A

Probab=98.80  E-value=6.3e-09  Score=77.51  Aligned_cols=52  Identities=21%  Similarity=0.537  Sum_probs=43.8

Q ss_pred             CcHHHHHHHHHHHhCCCCCCceEEec----Ce---ec-CCcchhhhcCCCCCCEEEEecc
Q 028093            1 MMIGDLKKAISEKTGLDPQEQKVLFR----GK---EK-EDNEHLDVSGMKDKSKVLLLEE   52 (214)
Q Consensus         1 ~Tv~~LK~~l~e~tGipp~~QKLifk----GK---~L-~d~~~L~~~GvkdgSki~Lv~~   52 (214)
                      +||++||.+|+..+|+||+.|+|.|.    |.   .+ +|..+|..||+++|++||++..
T Consensus        24 ~Tv~eLK~kl~~~~Gi~~~~m~L~l~~~~~~~~~~~~~dd~~~L~~y~~~dg~~i~V~D~   83 (87)
T PF14560_consen   24 ITVSELKQKLEKLTGIPPSDMRLQLKSDKDDSKIEELDDDDATLGSYGIKDGMRIHVVDT   83 (87)
T ss_dssp             SBHHHHHHHHHHHHTS-TTTEEEEEE-TSSSSEEEESSGSSSBCCHHT-STTEEEEEEE-
T ss_pred             CCHHHHHHHHHHHhCCCcccEEEEEEecCCCccccccCCCccEeecCCCCCCCEEEEEeC
Confidence            58999999999999999999999887    11   23 6899999999999999999875

>KOG0003 consensus Ubiquitin/60s ribosomal protein L40 fusion [Translation, ribosomal structure and biogenesis]

Probab=98.63  E-value=3.2e-09  Score=84.02  Aligned_cols=51  Identities=29%  Similarity=0.550  Sum_probs=48.9

Q ss_pred             cHHHHHHHHHHHhCCCCCCceEEecCeecCCcchhhhcCCCCCCEEEEecc
Q 028093            2 MIGDLKKAISEKTGLDPQEQKVLFRGKEKEDNEHLDVSGMKDKSKVLLLEE   52 (214)
Q Consensus         2 Tv~~LK~~l~e~tGipp~~QKLifkGK~L~d~~~L~~~GvkdgSki~Lv~~   52 (214)
                      ||..||..+..+.||||++|+|+|.||+|+|..+|..||++..|+||++-.
T Consensus        22 ti~~vKA~i~~~~Gi~~~~~~L~~~~k~LED~~Tla~Y~i~~~~Tl~~~~r   72 (128)
T KOG0003|consen   22 TIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLR   72 (128)
T ss_pred             hHHHHHHHhccccCCCHHHHHHHhcccccccCCcccccCccchhhhhhhHH
Confidence            789999999999999999999999999999999999999999999999853

>PF11976 Rad60-SLD: Ubiquitin-2 like Rad60 SUMO-like; InterPro: IPR022617 This entry includes small ubiquitin-related modifier (SUMO) proteins

Probab=98.52  E-value=1.7e-07  Score=66.66  Aligned_cols=50  Identities=22%  Similarity=0.481  Sum_probs=45.7

Q ss_pred             CcHHHHHHHHHHHhCCCC-CCceEEecCeecCCcchhhhcCCCCCCEEEEe
Q 028093            1 MMIGDLKKAISEKTGLDP-QEQKVLFRGKEKEDNEHLDVSGMKDKSKVLLL   50 (214)
Q Consensus         1 ~Tv~~LK~~l~e~tGipp-~~QKLifkGK~L~d~~~L~~~GvkdgSki~Lv   50 (214)
                      ++|+.|....++..|+|+ +.++|+|.|+.|+++.++.++|+++|+.|.++
T Consensus        21 ~~~~~l~~~~~~~~~i~~~~~~~l~fdG~~L~~~~T~~~~~ied~d~Idv~   71 (72)
T PF11976_consen   21 TTVSKLIEKYCEKKGIPPEESIRLIFDGKRLDPNDTPEDLGIEDGDTIDVI   71 (72)
T ss_dssp             SCCHHHHHHHHHHHTTTT-TTEEEEETTEEE-TTSCHHHHT-STTEEEEEE
T ss_pred             CcHHHHHHHHHHhhCCCccceEEEEECCEEcCCCCCHHHCCCCCCCEEEEE
Confidence            478999999999999999 99999999999999999999999999999986

SUMOs are small proteins that are covalently attached to lysines as post-translational modifications and are used to control multiple cellular process including signal transduction, nuclear transport and DNA replication and repair []. Unlike ubiquitin, they are not involved in protein degradation. This entry also contains the C-terminal Rad60 DNA repair protein SUMO-like domain.; PDB: 3RD2_A 2JXX_A 3RCZ_A 3GOE_A 3A4S_D 3A4R_B 2IO1_D 1U4A_A 2K1F_A 1WZ0_A ....

>cd01801 Tsc13_N Ubiquitin-like domain of Tsc13

Probab=98.50  E-value=1.9e-07  Score=68.21  Aligned_cols=49  Identities=27%  Similarity=0.358  Sum_probs=44.6

Q ss_pred             CcHHHHHHHHHHHhC-CCCCCceE--EecCeecCCcchhhhcCCCCCCEEEE
Q 028093            1 MMIGDLKKAISEKTG-LDPQEQKV--LFRGKEKEDNEHLDVSGMKDKSKVLL   49 (214)
Q Consensus         1 ~Tv~~LK~~l~e~tG-ipp~~QKL--ifkGK~L~d~~~L~~~GvkdgSki~L   49 (214)
                      .||++||..|+...+ +++++|||  .|+|+.|.|+.+|..|||++|++|++
T Consensus        23 aTV~dlk~~i~~~~~~~~~~Rqrl~~~~~g~~L~d~~tL~~~gv~~g~~lyv   74 (77)
T cd01801          23 ATIADLKKLIAKSSPQLTVNRQSLRLEPKGKSLKDDDTLVDLGVGAGATLYV   74 (77)
T ss_pred             ccHHHHHHHHHHHcCCCCcceeEEEeCCCCcccCCcccHhhcCCCCCCEEEE
Confidence            489999999999986 57999999  59999999999999999999999886

Tsc13_N N-terminal domain of Tsc13. Tsc13 is an enoyl reductase involved in elongation of long chain fatty acids that localizes to the endoplasmic reticulum and is highly enriched in a novel structure marking nuclear-vacuolar junctions.

>KOG0011 consensus Nucleotide excision repair factor NEF2, RAD23 component [Replication, recombination and repair]

Probab=98.35  E-value=4.1e-07  Score=83.56  Aligned_cols=53  Identities=21%  Similarity=0.384  Sum_probs=49.9

Q ss_pred             cHHHHHHHHHHHhC--CCCCCceEEecCeecCCcchhhhcCCCCCCEEEEecccc
Q 028093            2 MIGDLKKAISEKTG--LDPQEQKVLFRGKEKEDNEHLDVSGMKDKSKVLLLEELT   54 (214)
Q Consensus         2 Tv~~LK~~l~e~tG--ipp~~QKLifkGK~L~d~~~L~~~GvkdgSki~Lv~~p~   54 (214)
                      ||.++|+.|+...|  .|++.|||||.||.|.|+.++..|+|++++-|.+|.+..
T Consensus        22 tV~evK~kIet~~g~dyP~~~QkLIy~GkiL~D~~tv~Eykv~E~~fiVvMlsK~   76 (340)
T KOG0011|consen   22 TVVEVKKKIETEKGPDYPAEQQKLIYSGKILKDETTVGEYKVKEKKFIVVMLSKD   76 (340)
T ss_pred             hHHHHHHHHHhccCCCCchhhheeeecceeccCCcchhhhccccCceEEEEEecC
Confidence            79999999999999  999999999999999999999999999999998887643

>KOG0001 consensus Ubiquitin and ubiquitin-like proteins [Posttranslational modification, protein turnover, chaperones; General function prediction only]

Probab=98.28  E-value=2.1e-06  Score=58.34  Aligned_cols=52  Identities=29%  Similarity=0.445  Sum_probs=48.7

Q ss_pred             cHHHHHHHHHHHhCCCCCCceEEecCeecCCcchhhhcCCCCCCEEEEeccc
Q 028093            2 MIGDLKKAISEKTGLDPQEQKVLFRGKEKEDNEHLDVSGMKDKSKVLLLEEL   53 (214)
Q Consensus         2 Tv~~LK~~l~e~tGipp~~QKLifkGK~L~d~~~L~~~GvkdgSki~Lv~~p   53 (214)
                      +|..+|.+++...|+|+..|+|+|+|+.|.|..+|..|+|..+++++|+...
T Consensus        21 ~i~~~k~~i~~~~~~~~~~q~~~~~~~~l~d~~~l~~~~i~~~~~~~l~~~~   72 (75)
T KOG0001|consen   21 TIEVVKAKIRDKEGIPVDQQRLIFGGKPLEDGRTLADYNIQEGSTLHLVLSL   72 (75)
T ss_pred             HHHHHHHHHHhhcCCCCeeEEEEECCEECcCCCcHHHhCCCCCCEEEEEEec
Confidence            6788999999999999999999999999999999999999999999998753

>cd00196 UBQ Ubiquitin-like proteins

Probab=98.24  E-value=2.6e-06  Score=54.31  Aligned_cols=51  Identities=31%  Similarity=0.580  Sum_probs=48.0

Q ss_pred             CcHHHHHHHHHHHhCCCCCCceEEecCeecCCcchhhhcCCCCCCEEEEec
Q 028093            1 MMIGDLKKAISEKTGLDPQEQKVLFRGKEKEDNEHLDVSGMKDKSKVLLLE   51 (214)
Q Consensus         1 ~Tv~~LK~~l~e~tGipp~~QKLifkGK~L~d~~~L~~~GvkdgSki~Lv~   51 (214)
                      .|+++|+..|.++.|+++..|+|++.|..+++...+..+++.+|+.|+++.
T Consensus        18 ~tv~~l~~~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~   68 (69)
T cd00196          18 TTVADLKEKLAKKLGLPPEQQRLLVNGKILPDSLTLEDYGLQDGDELVLVP   68 (69)
T ss_pred             CcHHHHHHHHHHHHCcChHHeEEEECCeECCCCCcHHHcCCCCCCEEEEEe
Confidence            489999999999999999999999999999988888999999999999874

Ubiquitin homologs; Includes ubiquitin and ubiquitin-like proteins. Ubiquitin-mediated proteolysis is part of the regulated turnover of proteins required for controlling cell cycle progression. Other family members are protein modifiers that perform a wide range of functions. Ubiquitination usually results in a covalent bond between the C-terminus of ubiquitin and the epsilon-amino group of a substrate lysine. The three-step mechanism requires an activating enzyme (E1) that forms a thiol ester with the C-terminal carboxy group, a conjugating enzyme (E2) that transiently carries the activated ubiquitin molecule as a thiol ester, and a ligase (E3) that transfers the activated ubiquitin from the E2 to the substrate lysine residue. In poly-ubiquitination, ubiquitin itself is the substrate.

>KOG4248 consensus Ubiquitin-like protein, regulator of apoptosis [Posttranslational modification, protein turnover, chaperones]

Probab=98.21  E-value=1.2e-06  Score=89.80  Aligned_cols=55  Identities=18%  Similarity=0.416  Sum_probs=51.5

Q ss_pred             CcHHHHHHHHHHHhCCCCCCceEEecCeecCCcchhhhcCCCCCCEEEEecccccc
Q 028093            1 MMIGDLKKAISEKTGLDPQEQKVLFRGKEKEDNEHLDVSGMKDKSKVLLLEELTNK   56 (214)
Q Consensus         1 ~Tv~~LK~~l~e~tGipp~~QKLifkGK~L~d~~~L~~~GvkdgSki~Lv~~p~s~   56 (214)
                      +||.+||..+.+.+.|+.+.|||||.|++|.|+..+.+||| ||-+|||++.|-.+
T Consensus        23 ~ti~~~~d~~r~~~ni~s~~qr~i~~grvl~~~k~vq~~~v-dgk~~hlverppp~   77 (1143)
T KOG4248|consen   23 MTIKEFKDHIRASVNIPSEKQRLIYQGRVLQDDKKVQEYNV-DGKVIHLVERPPPQ   77 (1143)
T ss_pred             HHHHHHHHHHHHhcccccccceeeecceeeccchhhhhccC-CCeEEEeeccCCCC
Confidence            58999999999999999999999999999999999999999 99999999985433

>KOG1872 consensus Ubiquitin-specific protease [Posttranslational modification, protein turnover, chaperones]

Probab=98.09  E-value=3.9e-06  Score=80.14  Aligned_cols=53  Identities=21%  Similarity=0.335  Sum_probs=49.8

Q ss_pred             cHHHHHHHHHHHhCCCCCCceEEecCeecCCcchhhhcCCCCCCEEEEecccc
Q 028093            2 MIGDLKKAISEKTGLDPQEQKVLFRGKEKEDNEHLDVSGMKDKSKVLLLEELT   54 (214)
Q Consensus         2 Tv~~LK~~l~e~tGipp~~QKLifkGK~L~d~~~L~~~GvkdgSki~Lv~~p~   54 (214)
                      |...||.+|...||+||+.||++++|+.+.|+--+...+||+|.|||||+++.
T Consensus        25 t~~vlKaqlf~LTgV~PeRQKv~vKGg~a~dd~~~~al~iKpn~~lmMmGt~e   77 (473)
T KOG1872|consen   25 TPSVLKAQLFALTGVPPERQKVMVKGGLAKDDVDWGALQIKPNETLMMMGTAE   77 (473)
T ss_pred             chHHHHHHHHHhcCCCccceeEEEecccccccccccccccCCCCEEEeecccc
Confidence            67889999999999999999999999999888889999999999999999754

>PF13881 Rad60-SLD_2: Ubiquitin-2 like Rad60 SUMO-like; PDB: 1SE9_A 1WGH_A 2GOW_A

Probab=98.06  E-value=8.4e-06  Score=64.42  Aligned_cols=58  Identities=21%  Similarity=0.318  Sum_probs=43.5

Q ss_pred             CcHHHHHHHHHHHh--C---C--CCCCceEEecCeecCCcchhhhcCCCCCC------EEEEecccccccc
Q 028093            1 MMIGDLKKAISEKT--G---L--DPQEQKVLFRGKEKEDNEHLDVSGMKDKS------KVLLLEELTNKEK   58 (214)
Q Consensus         1 ~Tv~~LK~~l~e~t--G---i--pp~~QKLifkGK~L~d~~~L~~~GvkdgS------ki~Lv~~p~s~e~   58 (214)
                      +||++||+.|...-  +   -  .++..||||.||.|+|+.+|.+|++.-|.      .+||+..|...+.
T Consensus        24 ~TV~~lKe~i~~~WP~d~~~~p~s~~~lRLI~~GriL~d~~tL~~~~~~~~~~~~~~~vmHlvvrp~~~~~   94 (111)
T PF13881_consen   24 TTVADLKERIWAEWPEDWEERPKSPSDLRLIYAGRILEDNKTLSDCRLPSGETPGGPTVMHLVVRPNAPEP   94 (111)
T ss_dssp             SBHHHHHHHHHHSSSTTSSSTT-SGGGEEEEETTEEE-SSSBTGGGT--TTSETT--EEEEEEE-SSSSSS
T ss_pred             ChHHHHHHHHHHHCccccccCCCChhhEEEEeCCeecCCcCcHHHhCCCCCCCCCCCEEEEEEecCCCCCc
Confidence            58999999998631  1   1  25779999999999999999999999877      6888887765544

>PLN02560 enoyl-CoA reductase

Probab=97.97  E-value=1e-05  Score=73.94  Aligned_cols=50  Identities=28%  Similarity=0.441  Sum_probs=44.6

Q ss_pred             CcHHHHHHHHHHHhCC-CCCCceEEec---C----eecCCcchhhhcCCCCCCEEEEe
Q 028093            1 MMIGDLKKAISEKTGL-DPQEQKVLFR---G----KEKEDNEHLDVSGMKDKSKVLLL   50 (214)
Q Consensus         1 ~Tv~~LK~~l~e~tGi-pp~~QKLifk---G----K~L~d~~~L~~~GvkdgSki~Lv   50 (214)
                      .||++||++|+++.|+ ++++|||+|.   |    +.|+|+.+|.++||++|++|++-
T Consensus        24 aTV~dLK~~Isk~~~~~~~~RqRL~~~~~~gk~~g~~L~d~ktL~d~gv~~gstLy~k   81 (308)
T PLN02560         24 ATVADLKKAIHKRKKKYYPSRQRLTLPLPPGKTRPTVLDDSKSLKDYGLGDGGTVVFK   81 (308)
T ss_pred             CcHHHHHHHHHHHcCCCChhheEEEEecCCCCcCccccCCCCCHHhcCCCCCceEEEE
Confidence            5899999999999997 8999999982   4    47889999999999999998875

>cd01788 ElonginB Ubiquitin-like domain of Elongin B

Probab=97.65  E-value=7.5e-05  Score=59.72  Aligned_cols=52  Identities=17%  Similarity=0.229  Sum_probs=44.5

Q ss_pred             CcHHHHHHHHHHHhCCCCCCceEEecCeecCCcchhhhcCC-------CCCCEEEEecc
Q 028093            1 MMIGDLKKAISEKTGLDPQEQKVLFRGKEKEDNEHLDVSGM-------KDKSKVLLLEE   52 (214)
Q Consensus         1 ~Tv~~LK~~l~e~tGipp~~QKLifkGK~L~d~~~L~~~Gv-------kdgSki~Lv~~   52 (214)
                      +||-+||++|+..+..||++|||+-.+-.|+|..+|+.||+       ++-..|-|.-.
T Consensus        22 ~tVlelK~~iegI~k~pp~dQrL~kd~qvLeD~kTL~d~g~t~~~akaq~pA~vgLa~r   80 (119)
T cd01788          22 TTVYELKRIVEGILKRPPEDQRLYKDDQLLDDGKTLGDCGFTSQTARPQAPATVGLAFR   80 (119)
T ss_pred             ccHHHHHHHHHHHhcCChhHheeecCceeecccccHHHcCccccccccCCCCeEEEEEe
Confidence            48999999999999999999999933444799999999999       66778877643

Elongin B is part of an E3 ubiquitin ligase complex called VEC that activates ubiquitylation by the E2 ubiquitin-conjugating enzyme Ubc5. VEC is composed of von Hippel-Lindau tumor suppressor protein (pVHL), elongin C, cullin 2, NEDD8, and Rbx1. ElonginB binds elonginC to form the elonginBC complex which is a positive regulator of RNA polymerase II elongation factor Elongin A. The BC complex then binds VHL (von Hippel-Lindau) tumour suppressor protein to form a VCB ternary complex. Elongin B has a ubiquitin-llike domain.

>KOG4361 consensus BCL2-associated athanogene-like proteins and related BAG family chaperone regulators [Signal transduction mechanisms]

Probab=97.59  E-value=3.1e-05  Score=71.93  Aligned_cols=61  Identities=25%  Similarity=0.332  Sum_probs=55.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCchhhhhHHHHHHHHHHhhcccccchhhHHHHHHHHH
Q 028093           84 LQAIAGVRAEVDKLSERVASLEVAVNGGTKVPSEELDTSAELLMKELLKLDGIEAEGEAKVQRKTEVR  151 (214)
Q Consensus        84 ~~aI~~i~~evd~L~~~V~~~e~~v~~~~k~~eke~~~L~E~Lm~~LlkLD~Ie~~Gd~R~~RK~~Vk  151 (214)
                      ...|..|.++|..|.+.|..|      +++..++.|.+|.|+|.++||+||+|++. ++|..||.+|+
T Consensus       284 ~~~V~~~~~~~~~~~~~v~sf------~g~~~~k~y~~~Ee~lt~~ll~ld~~d~~-~~~~ar~~~~~  344 (344)
T KOG4361|consen  284 SLKVQQILEKVLELEGAVESF------EGPRTDKSYAKLEEFLTKNLLALDSVDPQ-SVRRARKEAVR  344 (344)
T ss_pred             ccchhhHhhhhhhhhhhhhhc------CCCccchhHHHHHHhcccccchhhccCcc-hhhhhhhhhcC
Confidence            457788888999999999999      78889999999999999999999999999 99999999874

>KOG0006 consensus E3 ubiquitin-protein ligase (Parkin protein) [Posttranslational modification, protein turnover, chaperones]

Probab=97.00  E-value=0.00062  Score=63.15  Aligned_cols=53  Identities=19%  Similarity=0.366  Sum_probs=48.1

Q ss_pred             cHHHHHHHHHHHhCCCCCCceEEecCeecCCcchhhhcCCCCCCEEEEe-cccc
Q 028093            2 MIGDLKKAISEKTGLDPQEQKVLFRGKEKEDNEHLDVSGMKDKSKVLLL-EELT   54 (214)
Q Consensus         2 Tv~~LK~~l~e~tGipp~~QKLifkGK~L~d~~~L~~~GvkdgSki~Lv-~~p~   54 (214)
                      +|.+||+.++..+|||+++.|+||.||+|.++.++..|.+..-|-+|+| -.|-
T Consensus        25 ~I~~lke~Vak~~gvp~D~L~viFaGKeLs~~ttv~~cDL~qqs~~hi~~lRP~   78 (446)
T KOG0006|consen   25 SIFQLKEVVAKRQGVPADQLRVIFAGKELSNDTTVQNCDLSQQSATHIMLLRPW   78 (446)
T ss_pred             CHHHHHHHHHHhhCCChhheEEEEeccccccCceeecccccccchhhhhccCcc
Confidence            5889999999999999999999999999999999999999999988887 3443

>PF11543 UN_NPL4: Nuclear pore localisation protein NPL4; InterPro: IPR024682 Npl4, along with Ufd1, forms the heterodimer adaptor complex UN, which is involved in the recruitment of p97, an AAA ATPase, for tasks involving the ubiquitin pathway

Probab=96.46  E-value=0.0024  Score=47.55  Aligned_cols=49  Identities=27%  Similarity=0.399  Sum_probs=29.0

Q ss_pred             CcHHHHHHHHHHHhCCCCCCceEEecCe----ec--CCcchhhhcCCCCCCEEEEe
Q 028093            1 MMIGDLKKAISEKTGLDPQEQKVLFRGK----EK--EDNEHLDVSGMKDKSKVLLL   50 (214)
Q Consensus         1 ~Tv~~LK~~l~e~tGipp~~QKLifkGK----~L--~d~~~L~~~GvkdgSki~Lv   50 (214)
                      +|+++|+++|.+.+++|+..|.|. ..+    .+  .+..+|+.+||+.|+-|+|-
T Consensus        24 ~t~~~L~~kI~~~l~~~~~~~~L~-~~~~~~~~l~s~~~~tl~~lglkHGdmlyL~   78 (80)
T PF11543_consen   24 STLSDLKEKISEQLSIPDSSQSLS-KDRNNKEELKSSDSKTLSSLGLKHGDMLYLK   78 (80)
T ss_dssp             SBHHHHHHHHHHHS---TTT---B-SSGGGGGCSSS-TT-CCCCT---TT-EEE--
T ss_pred             ccHHHHHHHHHHHcCCCCcceEEE-ecCCCCcccccCCcCCHHHcCCCCccEEEEe
Confidence            489999999999999999988773 322    34  47899999999999999873

Npl4 has a N-terminal ubiquitin-like domain which has within its structure a beta-grasp fold with a helical insert []. This entry represents the ubiquitin-like domain.; PDB: 2PJH_A 1WF9_A.

>KOG3206 consensus Alpha-tubulin folding cofactor B [Posttranslational modification, protein turnover, chaperones]

Probab=96.40  E-value=0.0065  Score=53.37  Aligned_cols=54  Identities=13%  Similarity=0.363  Sum_probs=48.2

Q ss_pred             CcHHHHHHHHHHHhCCCCCCceE-EecC-----eec-CCcchhhhcCCCCCCEEEEecccc
Q 028093            1 MMIGDLKKAISEKTGLDPQEQKV-LFRG-----KEK-EDNEHLDVSGMKDKSKVLLLEELT   54 (214)
Q Consensus         1 ~Tv~~LK~~l~e~tGipp~~QKL-ifkG-----K~L-~d~~~L~~~GvkdgSki~Lv~~p~   54 (214)
                      +|+.+||.+|+-.||.+++.++| +|+|     -.| ++++.|..|++.||..||++...+
T Consensus        23 ltl~q~K~KLe~~~G~~~~~M~l~l~~~~d~~~~~lsn~d~~lg~~~~~Dg~rihviD~~~   83 (234)
T KOG3206|consen   23 LTLAQFKDKLELLTGTEAESMELELYDGDDKKVSALSNEDADLGFYKVEDGLRIHVIDSNA   83 (234)
T ss_pred             CcHHHHHhhhhhhhCCCccceEEEEEcCCCceeeeccCCcccccccCCCCceEEEEEecCc
Confidence            58999999999999999999999 8887     246 688999999999999999998644

>KOG0013 consensus Uncharacterized conserved protein [Function unknown]

Probab=95.41  E-value=0.017  Score=50.86  Aligned_cols=50  Identities=24%  Similarity=0.521  Sum_probs=46.2

Q ss_pred             cHHHHHHHHHHHhCCCCCCceEEecCeecCCcchhhhcCCCCCCEEEEec
Q 028093            2 MIGDLKKAISEKTGLDPQEQKVLFRGKEKEDNEHLDVSGMKDKSKVLLLE   51 (214)
Q Consensus         2 Tv~~LK~~l~e~tGipp~~QKLifkGK~L~d~~~L~~~GvkdgSki~Lv~   51 (214)
                      |++++|..|..+.|+++-.|+++|.|+.+-|+..|..|++..|++-.+-+
T Consensus       168 tv~eik~~L~Aaeg~D~~sQrif~Sg~~l~dkt~LeEc~iekg~rYvlqv  217 (231)
T KOG0013|consen  168 TVGEIKRALRAAEGVDPLSQRIFFSGGVLVDKTDLEECKIEKGQRYVLQV  217 (231)
T ss_pred             cHHHHHHHHHHhhccchhhheeeccCCceeccccceeeeecCCCEEEEEE
Confidence            78999999999999999999999999999999999999999997765543

>PF10302 DUF2407: DUF2407 ubiquitin-like domain; InterPro: IPR019413 This entry represents a family of proteins of unknown function found in fungi

Probab=95.07  E-value=0.027  Score=43.55  Aligned_cols=43  Identities=16%  Similarity=0.235  Sum_probs=34.6

Q ss_pred             CcHHHHHHHHHHHhCCC--CCCceEEecCeecCCcchhhhcCCCC
Q 028093            1 MMIGDLKKAISEKTGLD--PQEQKVLFRGKEKEDNEHLDVSGMKD   43 (214)
Q Consensus         1 ~Tv~~LK~~l~e~tGip--p~~QKLifkGK~L~d~~~L~~~Gvkd   43 (214)
                      .|+..||++|-+..+=+  -..+||||.||.|.|...|...-...
T Consensus        24 ~Tv~~LK~lIR~~~p~~~s~~rLRlI~~Gr~L~d~t~l~~~l~~~   68 (97)
T PF10302_consen   24 TTVAWLKQLIRERLPPEPSRRRLRLIYAGRLLNDHTDLSSELKLP   68 (97)
T ss_pred             ccHHHHHHHHHhhcCCCCccccEEeeecCcccCccchhhhhhccc
Confidence            48999999999998444  35579999999999999888764444

They contain a characteristic GFDRL sequence motif.

>PF15044 CLU_N: Mitochondrial function, CLU-N-term

Probab=95.03  E-value=0.046  Score=40.31  Aligned_cols=55  Identities=20%  Similarity=0.243  Sum_probs=47.0

Q ss_pred             CcHHHHHHHHHHHhC-CCCCCceEEecCeecCCcchhhhc-CCCCCCEEEEeccccc
Q 028093            1 MMIGDLKKAISEKTG-LDPQEQKVLFRGKEKEDNEHLDVS-GMKDKSKVLLLEELTN   55 (214)
Q Consensus         1 ~Tv~~LK~~l~e~tG-ipp~~QKLifkGK~L~d~~~L~~~-GvkdgSki~Lv~~p~s   55 (214)
                      .+|.||++.|..... ..-....|.|+|+.|++-..|... |+++|++|.|+++|..
T Consensus         5 d~v~dvrq~L~~~~~t~~~Tn~~L~~~g~~L~~~~el~~i~~~~~~~~L~lve~pYt   61 (76)
T PF15044_consen    5 DTVQDVRQVLAESPETCYLTNFSLEHNGQRLDDFVELSEIEGIKDGCVLELVEEPYT   61 (76)
T ss_pred             hHHHHHHHHHHhCccccceeEEEEEECCCccCCchhhhhhhCCCCCcEEEEEecCCC
Confidence            368899999888765 335678999999999988888877 8999999999999886

>PF11470 TUG-UBL1: GLUT4 regulating protein TUG; InterPro: IPR021569 TUG is a GLUT4 regulating protein and functions to retain membrane vesicles containing GLUT4 intracellularly

Probab=94.59  E-value=0.074  Score=38.38  Aligned_cols=49  Identities=18%  Similarity=0.291  Sum_probs=37.7

Q ss_pred             CcHHHHHHHHHHHhCCCCCCceEEecCeecCCcchhhhcCCCCCCEEEE
Q 028093            1 MMIGDLKKAISEKTGLDPQEQKVLFRGKEKEDNEHLDVSGMKDKSKVLL   49 (214)
Q Consensus         1 ~Tv~~LK~~l~e~tGipp~~QKLifkGK~L~d~~~L~~~GvkdgSki~L   49 (214)
                      +|+.++=+..+.+.|+++++-.|.|++|.+|-..++.-.|+-+|+++-|
T Consensus        17 ~~l~~VL~eac~k~~l~~~~~~L~h~~k~ldlslp~R~snL~n~akLeL   65 (65)
T PF11470_consen   17 TTLNQVLEEACKKFGLDPSSYDLKHNNKPLDLSLPFRLSNLPNNAKLEL   65 (65)
T ss_dssp             SBHHHHHHHHHHHTT--GGG-EEEETTEEESSS-BHHHH---SS-EEEE
T ss_pred             CCHHHHHHHHHHHcCCCccceEEEECCEEeccccceeecCCCCCCEEeC
Confidence            4678888999999999999999999999999999999999999999865

TUG releases the GLUT4 containing vesicles to the cellular exocytic machinery in response to insulin stimulation which allows translocation to the plasma membrane []. TUG has an N-terminal ubiquitin-like domain (UBL1) which in similar proteins appears to participate in protein-protein interactions []. The region does have a area of negative electrostatic potential and increased backbone motility which leads to suggestions of a potential protein-protein interaction site []. ; PDB: 2AL3_A.

>PF08817 YukD: WXG100 protein secretion system (Wss), protein YukD; InterPro: IPR014921 YukD is a bacterial protein that adopts a ubiquitin-like fold []

Probab=94.07  E-value=0.055  Score=39.50  Aligned_cols=49  Identities=18%  Similarity=0.307  Sum_probs=33.6

Q ss_pred             cHHHHHHHHHHHhCCCCCC------ceEE-ecCeecCCcchhhhcCCCCCCEEEEe
Q 028093            2 MIGDLKKAISEKTGLDPQE------QKVL-FRGKEKEDNEHLDVSGMKDKSKVLLL   50 (214)
Q Consensus         2 Tv~~LK~~l~e~tGipp~~------QKLi-fkGK~L~d~~~L~~~GvkdgSki~Lv   50 (214)
                      ++.+|...|.+..+.+...      -+|. -+|..|+++.+|.++||.||+.++|.
T Consensus        24 pv~~li~~l~~~~~~~~~~~~~~~~~~L~~~~g~~L~~~~tL~~~gV~dGd~L~L~   79 (79)
T PF08817_consen   24 PVAELIPELVELLGLPGDDPPGHGQWVLARAGGRPLDPDQTLADAGVRDGDVLVLR   79 (79)
T ss_dssp             BTTHHHHHHHHHS---S---TT-E-EEEG-GGTEEEETTSBCGGGT--TT-EEEE-
T ss_pred             cHHHHHHHHHHHhCCccCCCCCcceEEEEecCCcccCCcCcHhHcCCCCCCEEEeC
Confidence            5778888888888875322      3566 67888999999999999999999873

Ubiquitin covalently binds to protein and flags them for protein degradation, however conjugation assays have indicated that YukD lacks the capacity for covalent bond formation with other proteins []. ; PDB: 2BPS_B.

>KOG1769 consensus Ubiquitin-like proteins [Posttranslational modification, protein turnover, chaperones]

Probab=93.44  E-value=0.2  Score=39.19  Aligned_cols=50  Identities=22%  Similarity=0.357  Sum_probs=45.6

Q ss_pred             cHHHHHHHHHHHhCCCCCCceEEecCeecCCcchhhhcCCCCCCEEEEec
Q 028093            2 MIGDLKKAISEKTGLDPQEQKVLFRGKEKEDNEHLDVSGMKDKSKVLLLE   51 (214)
Q Consensus         2 Tv~~LK~~l~e~tGipp~~QKLifkGK~L~d~~~L~~~GvkdgSki~Lv~   51 (214)
                      ++.-|.+.-+++.|++.+..|++|.|+.+....+=...++++|+.|-++.
T Consensus        42 ~LkKLM~aYc~r~Gl~~~s~RFlFdG~rI~~~~TP~~L~mEd~D~Iev~~   91 (99)
T KOG1769|consen   42 PLKKLMKAYCERQGLSMNSLRFLFDGQRIRETHTPADLEMEDGDEIEVVQ   91 (99)
T ss_pred             hHHHHHHHHHHHcCCccceEEEEECCcCcCCCCChhhhCCcCCcEEEEEe
Confidence            46678888999999999999999999999998999999999999998775

>KOG3493 consensus Ubiquitin-like protein [Posttranslational modification, protein turnover, chaperones]

Probab=93.23  E-value=0.024  Score=41.52  Aligned_cols=49  Identities=29%  Similarity=0.266  Sum_probs=40.3

Q ss_pred             CcHHHHHHHHHHHhCCCCCCceEEecCeecCCcchhhhcCCCCCCEEEE
Q 028093            1 MMIGDLKKAISEKTGLDPQEQKVLFRGKEKEDNEHLDVSGMKDKSKVLL   49 (214)
Q Consensus         1 ~Tv~~LK~~l~e~tGipp~~QKLifkGK~L~d~~~L~~~GvkdgSki~L   49 (214)
                      .||||+|+.|+..||-.|+...|=--+-..+|.-+|+.|.|++|--+-|
T Consensus        22 DtiGD~KKliaaQtGT~~~kivl~k~~~i~kd~I~L~dyeihdg~~lel   70 (73)
T KOG3493|consen   22 DTIGDLKKLIAAQTGTRPEKIVLKKWYTIFKDHITLSDYEIHDGMNLEL   70 (73)
T ss_pred             ccccCHHHHHHHhhCCChhHhHHHhhhhhhhcccceeeEEeccCccEEE
Confidence            3899999999999999999887763333459999999999999976544

>KOG4495 consensus RNA polymerase II transcription elongation factor Elongin/SIII, subunit elongin B [Transcription]

Probab=92.40  E-value=0.1  Score=40.96  Aligned_cols=41  Identities=17%  Similarity=0.210  Sum_probs=35.3

Q ss_pred             CcHHHHHHHHHHHhCCCCCCceEEecCe-e-cCCcchhhhcCC
Q 028093            1 MMIGDLKKAISEKTGLDPQEQKVLFRGK-E-KEDNEHLDVSGM   41 (214)
Q Consensus         1 ~Tv~~LK~~l~e~tGipp~~QKLifkGK-~-L~d~~~L~~~Gv   41 (214)
                      .||-+||.+|+..+-=|++.|||.-=.- + |+|..+|..||.
T Consensus        22 ~tV~elK~~l~gi~~~Pvn~qrL~kmd~eqlL~D~ktL~d~gf   64 (110)
T KOG4495|consen   22 STVFELKRKLEGILKRPVNEQRLYKMDTEQLLDDGKTLGDCGF   64 (110)
T ss_pred             ccHHHHHHHHHHHHhCCCcchheeecCHHHHhhccchhhhccc
Confidence            4899999999999999999999976333 4 599999999965

>KOG4583 consensus Membrane-associated ER protein involved in stress response (contains ubiquitin-like domain) [Posttranslational modification, protein turnover, chaperones]

Probab=86.60  E-value=0.24  Score=46.44  Aligned_cols=39  Identities=26%  Similarity=0.307  Sum_probs=31.8

Q ss_pred             cHHHHHHHHHHHhCCC--CCCceEEecCeecCCcchhhhcC
Q 028093            2 MIGDLKKAISEKTGLD--PQEQKVLFRGKEKEDNEHLDVSG   40 (214)
Q Consensus         2 Tv~~LK~~l~e~tGip--p~~QKLifkGK~L~d~~~L~~~G   40 (214)
                      |+++||..|+...-=.  +.+|||||.||.|.|...|.+.=
T Consensus        33 tv~~Lk~hls~VyPskpl~~dqrliYsgkllld~qcl~d~l   73 (391)
T KOG4583|consen   33 TVGDLKVHLSQVYPSKPLELDQRLIYSGKLLLDHQCLTDWL   73 (391)
T ss_pred             hHHHHhhhHhhcCCCCCchhhHHHHhhccccccchhHHHHH
Confidence            7999999998875333  46799999999999988887543

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	214
1uk5_A	111	BAG-family molecular chaperone regulator-3; triple	1e-09
2kd0_A	85	LRR repeats and ubiquitin-like domain-containing p	1e-09
3a8y_C	142	BAG family molecular chaperone regulator 5; BAG do	6e-09
1m7k_A	99	Silencer of death domains; three helix bundle, cha	1e-08
1m62_A	87	BAG-family molecular chaperone regulator-4; BAG do	2e-08
1v86_A	95	DNA segment, CHR 7, wayne state university 128, ex	2e-07
1ugo_A	99	BCL2-associated athanogene 5; triple helix bundle,	2e-07
1wgg_A	96	Ubiquitin carboxyl-terminal hydrolase 14; ubiquiti	2e-06
1wxv_A	92	BAG-family molecular chaperone regulator-1; struct	7e-05
1wx8_A	96	Riken cDNA 4931431F19; ubiquitin-like domain, ubiq	8e-05
2bwf_A	77	Ubiquitin-like protein DSK2; signaling protein, UB	2e-04
2kan_A	94	Uncharacterized protein AR3433A; ubiquitin fold, a	2e-04
3m63_B	101	Ubiquitin domain-containing protein DSK2; armadill	3e-04
1v5t_A	90	8430435I17RIK protein; hypothetical protein, ubiqu	3e-04
1ndd_A	76	NEDD8, protein (ubiquitin-like protein NEDD8); pro	4e-04
3m62_B	106	UV excision repair protein RAD23; armadillo-like r	6e-04
1wx7_A	106	Ubiquilin 3; ubiquitin-like domain, structural gen	6e-04
1yqb_A	100	Ubiquilin 3; structural genomics consortium, ubiqu	7e-04
4fbj_B	88	NEDD8; effector-HOST target complex, glutamine dea	7e-04
1v5o_A	102	1700011N24RIK protein; hypothetical protein, ubiqu	8e-04

>1uk5_A BAG-family molecular chaperone regulator-3; triple helix bandle, CAIR-1, BIS, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: a.7.7.1 Length = 111

 Score = 53.2 bits (127), Expect = 1e-09
 Identities = 26/115 (22%), Positives = 43/115 (37%), Gaps = 8/115 (6%)

Query: 57  EKKPKEVKDSPEKKHEYAKDSEEMRKALQAIAGVRAEVDKLSERVASLEVAVNGGTKVPS 116
                     P        ++      +  +  +  +V  L + V S         K   
Sbjct: 2   SSGSSGAPAEPAAPKSGEAETPPKHPGVLKVEAILEKVQGLEQAVDSF------EGKKTD 55

Query: 117 EELDTSAELLMKELLKLDGIEAEGEAKVQ--RKTEVRRVQKFHETLDNLKAINSN 169
           ++     E L KELL LD ++ EG A V+  R+  VR+VQ   E L+   +  S+
Sbjct: 56  KKYLMIEEYLTKELLALDSVDPEGRADVRQARRDGVRKVQTILEKLEQKASGPSS 110

>2kd0_A LRR repeats and ubiquitin-like domain-containing protein AT2G30105; ubiquitin-like protein, NESG, leucine-rich repeat, structural genomics; NMR {Arabidopsis thaliana} Length = 85

 Score = 52.3 bits (126), Expect = 1e-09
 Identities = 14/48 (29%), Positives = 27/48 (56%)

Query: 3  IGDLKKAISEKTGLDPQEQKVLFRGKEKEDNEHLDVSGMKDKSKVLLL 50
          + DLK  +   T + P+ QK++F+GK   +   L  S +   +K++L+
Sbjct: 34 VKDLKSQLQPITNVLPRGQKLIFKGKVLVETSTLKQSDVGSGAKLMLM 81

>3a8y_C BAG family molecular chaperone regulator 5; BAG domain, HSP70, ATPase domain, protein complex, triple helix, structural genomics, NPPSFA; 2.30A {Homo sapiens} Length = 142

 Score = 51.8 bits (123), Expect = 6e-09
 Identities = 26/121 (21%), Positives = 44/121 (36%), Gaps = 8/121 (6%)

Query: 65  DSPEKKHEYAKDSEEMRKALQAIAGVRAEVDKLSERVASLEVAVNGGTKVPSEELDTSAE 124
           D  E   +    + E   + +A+  V   + ++   V S +           +      E
Sbjct: 14  DLKEALEKRKLFACEEHPSHKAVWNVLGNLSEIQGEVLSFD------GNRTDKNYIRLEE 67

Query: 125 LLMKELLKLDGIEAEGEAKVQ--RKTEVRRVQKFHETLDNLKAINSNPFCDSSNAIKVVT 182
           LL K+LL LD ++ +GE K +  RK  VR  Q     LD               A+++  
Sbjct: 68  LLTKQLLALDAVDPQGEEKCKAARKQAVRLAQNILSYLDLKSDEWEYCKAARKQAVRLAQ 127

Query: 183 Q 183
            
Sbjct: 128 N 128

>1m7k_A Silencer of death domains; three helix bundle, chaperone; NMR {Homo sapiens} SCOP: a.7.7.1 Length = 99

 Score = 50.0 bits (119), Expect = 1e-08
 Identities = 25/96 (26%), Positives = 44/96 (45%), Gaps = 3/96 (3%)

Query: 70  KHEYAKDSEEMRKALQAIAGVRAEVDKLSERVASLEVAVNG-GTKVPSEELDTSAELLMK 128
           + + +   EE   + ++      ++  + E+V  LE  V     K   +      E+L K
Sbjct: 2   QDQSSSLPEECVPSDESTPPSIKKIIHVLEKVQYLEQEVEEFVGKKTDKAYWLLEEMLTK 61

Query: 129 ELLKLDGIEAEGEAKVQ--RKTEVRRVQKFHETLDN 162
           ELL+LD +E  G+  V+  RK  V ++Q   E L+ 
Sbjct: 62  ELLELDSVETGGQDSVRQARKEAVCKIQAILEKLEK 97

>1m62_A BAG-family molecular chaperone regulator-4; BAG domain, SODD, silencer of death domains, HSP70/HSC70 CO-chaperone; NMR {Homo sapiens} SCOP: a.7.7.1 Length = 87

 Score = 48.8 bits (116), Expect = 2e-08
 Identities = 23/83 (27%), Positives = 37/83 (44%), Gaps = 8/83 (9%)

Query: 82  KALQAIAGVRAEVDKLSERVASLEVAVNGGTKVPSEELDTSAELLMKELLKLDGIEAEGE 141
            +++ I  V  +V  L + V           K   +      E+L KELL+LD +E  G+
Sbjct: 8   PSIKKIIHVLEKVQYLEQEVEEFV------GKKTDKAYWLLEEMLTKELLELDSVETGGQ 61

Query: 142 AKVQ--RKTEVRRVQKFHETLDN 162
             V+  RK  V ++Q   E L+ 
Sbjct: 62  DSVRQARKEAVCKIQAILEKLEK 84

>1v86_A DNA segment, CHR 7, wayne state university 128, expressed; ubiquitin fold, structural genomics, D7WSU128E protein; HET: DNA; NMR {Mus musculus} SCOP: d.15.1.1 Length = 95

 Score = 46.3 bits (110), Expect = 2e-07
 Identities = 13/48 (27%), Positives = 27/48 (56%), Gaps = 1/48 (2%)

Query: 3  IGDLKKAISEKTGLDPQEQKVLFRGKEKEDNEHLDVSGMKDKSKVLLL 50
            +LK+ I   TGL P  QKV+++G    +++ L    +   +K++++
Sbjct: 39 GSELKQKIHSITGLPPAMQKVMYKGLVP-EDKTLREIKVTSGAKIMVV 85

>1ugo_A BCL2-associated athanogene 5; triple helix bundle, riken structural genomics/proteomics initiative, RSGI, structural genomics, chaperone; NMR {Mus musculus} SCOP: a.7.7.1 Length = 99

 Score = 46.5 bits (110), Expect = 2e-07
 Identities = 13/82 (15%), Positives = 34/82 (41%), Gaps = 8/82 (9%)

Query: 83  ALQAIAGVRAEVDKLSERVASLEVAVNGGTKVPSEELDTSAELLMKELLKLDGIEAEGEA 142
           ++  +  ++ EV  +  +V               +       +L K+L ++D ++ EG+ 
Sbjct: 16  SISRLQEIQREVKAIEPQVVGFS------GLSDDKNYKRLERILTKQLFEIDSVDTEGKG 69

Query: 143 KVQ--RKTEVRRVQKFHETLDN 162
            +Q  RK   +  ++  + L+ 
Sbjct: 70  DIQQARKRAAQETERLLKELEQ 91

>1wgg_A Ubiquitin carboxyl-terminal hydrolase 14; ubiquitin specific protease 14, USP14, ubiquitin-like fold, structural genomics; NMR {Mus musculus} SCOP: d.15.1.1 Length = 96

 Score = 43.7 bits (103), Expect = 2e-06
 Identities = 15/65 (23%), Positives = 27/65 (41%), Gaps = 1/65 (1%)

Query: 3  IGDLKKAISEKTGLDPQEQKVLFRGKEKEDNEHLDVSGMKDKSKVLLLEELTNKEKKPKE 62
              K  +   TG+ P  QKV+ +G   +D++      MK+   VL++       ++P  
Sbjct: 30 PMVFKAQLFALTGVQPARQKVMVKGGTLKDDD-WGNIKMKNGMTVLMMGSADALPEEPSA 88

Query: 63 VKDSP 67
              P
Sbjct: 89 KTSGP 93

>1wxv_A BAG-family molecular chaperone regulator-1; structural genomics, apoptosis, riken structural genomics/proteomics initiative, RSGI, NPPSFA; NMR {Homo sapiens} SCOP: d.15.1.1 Length = 92

 Score = 39.4 bits (91), Expect = 7e-05
 Identities = 16/51 (31%), Positives = 29/51 (56%), Gaps = 1/51 (1%)

Query: 1  MMIGDLKKAISEKTGLDPQEQKVLFRGKE-KEDNEHLDVSGMKDKSKVLLL 50
           ++ DL + + E  G+    QK++F+GK  KE    L   G++D  +V+L+
Sbjct: 32 PVVQDLAQVVEEVIGVPQSFQKLIFKGKSLKEMETPLSALGIQDGCRVMLI 82

>1wx8_A Riken cDNA 4931431F19; ubiquitin-like domain, ubiquilin 1-like, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1 Length = 96

 Score = 39.3 bits (92), Expect = 8e-05
 Identities = 13/47 (27%), Positives = 21/47 (44%)

Query: 3  IGDLKKAISEKTGLDPQEQKVLFRGKEKEDNEHLDVSGMKDKSKVLL 49
          +   KK IS+    +     ++F GK   D + L   G+ D S V +
Sbjct: 39 VRRFKKQISKYLHCNADRLVLIFTGKILRDQDILSQRGILDGSTVHV 85

>2bwf_A Ubiquitin-like protein DSK2; signaling protein, UBA, signaling proteins; 1.15A {Saccharomyces cerevisiae} SCOP: d.15.1.1 PDB: 2bwe_S Length = 77

 Score = 38.0 bits (89), Expect = 2e-04
 Identities = 11/47 (23%), Positives = 27/47 (57%)

Query: 3  IGDLKKAISEKTGLDPQEQKVLFRGKEKEDNEHLDVSGMKDKSKVLL 49
          +   K+AI++  G+    Q++++ GK  +D++ ++   ++D   V L
Sbjct: 26 VLQFKEAINKANGIPVANQRLIYSGKILKDDQTVESYHIQDGHSVHL 72

>2kan_A Uncharacterized protein AR3433A; ubiquitin fold, alpha+beta, structural genomics, protein structure initiative; NMR {Arabidopsis thaliana} Length = 94

 Score = 37.8 bits (88), Expect = 2e-04
 Identities = 11/57 (19%), Positives = 27/57 (47%), Gaps = 1/57 (1%)

Query: 3  IGDLKKAISEKTGLDPQEQKVLFRGKE-KEDNEHLDVSGMKDKSKVLLLEELTNKEK 58
          +  LK  I        +  ++ + G E  +D  +L+  G+ + S++++  +  N+ K
Sbjct: 37 VSSLKDKIHIVENTPIKRMQLYYSGIELADDYRNLNEYGITEFSEIVVFLKSINRAK 93

>3m63_B Ubiquitin domain-containing protein DSK2; armadillo-like repeats, UBL conjugation pathway, nucleus, phosphoprotein; HET: 1PE; 2.40A {Saccharomyces cerevisiae} Length = 101

 Score = 38.1 bits (89), Expect = 3e-04
 Identities = 11/47 (23%), Positives = 27/47 (57%)

Query: 3  IGDLKKAISEKTGLDPQEQKVLFRGKEKEDNEHLDVSGMKDKSKVLL 49
          +   K+AI++  G+    Q++++ GK  +D++ ++   ++D   V L
Sbjct: 50 VLQFKEAINKANGIPVANQRLIYSGKILKDDQTVESYHIQDGHSVHL 96

>1v5t_A 8430435I17RIK protein; hypothetical protein, ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1 PDB: 2kx3_A Length = 90

 Score = 37.6 bits (87), Expect = 3e-04
 Identities = 15/51 (29%), Positives = 30/51 (58%), Gaps = 3/51 (5%)

Query: 3  IGDLKKAISEKTGLDPQEQKVL---FRGKEKEDNEHLDVSGMKDKSKVLLL 50
          + DLK+ +   TG+ P+ QK+L    +GK  E++  L    +K  +K++++
Sbjct: 30 VLDLKQFLKTLTGVLPERQKLLGLKVKGKPAENDVKLGALKLKPNTKIMMM 80

>1ndd_A NEDD8, protein (ubiquitin-like protein NEDD8); proteolysis, signaling protei; 1.60A {Homo sapiens} SCOP: d.15.1.1 PDB: 1r4m_I 1r4n_I* 1xt9_B 2ko3_A 3gzn_I* 2bkr_B 2nvu_I* 3dqv_A 1bt0_A Length = 76

 Score = 36.8 bits (86), Expect = 4e-04
 Identities = 12/49 (24%), Positives = 26/49 (53%)

Query: 1  MMIGDLKKAISEKTGLDPQEQKVLFRGKEKEDNEHLDVSGMKDKSKVLL 49
            +  +K+ + EK G+ PQ+Q++++ GK+  D +      +   S + L
Sbjct: 21 DKVERIKERVEEKEGIPPQQQRLIYSGKQMNDEKTAADYKILGGSVLHL 69

>3m62_B UV excision repair protein RAD23; armadillo-like repeats, UBL conjugation pathway, DNA damage, nucleus, phosphoprotein; HET: 1PE; 2.40A {Saccharomyces cerevisiae} Length = 106

 Score = 37.0 bits (86), Expect = 6e-04
 Identities = 10/47 (21%), Positives = 26/47 (55%)

Query: 3  IGDLKKAISEKTGLDPQEQKVLFRGKEKEDNEHLDVSGMKDKSKVLL 49
          I + K  +++    +  + K+++ GK  +D++ +   G+KD  +V+ 
Sbjct: 24 ILETKTKLAQSISCEESQIKLIYSGKVLQDSKTVSECGLKDGDQVVF 70

>1wx7_A Ubiquilin 3; ubiquitin-like domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: d.15.1.1 Length = 106

 Score = 37.0 bits (86), Expect = 6e-04
 Identities = 15/47 (31%), Positives = 25/47 (53%)

Query: 3  IGDLKKAISEKTGLDPQEQKVLFRGKEKEDNEHLDVSGMKDKSKVLL 49
          I  LK+ IS++    P +  ++F GK  +D + L   G++D   V L
Sbjct: 39 IQQLKEEISQRFKAHPDQLVLIFAGKILKDPDSLAQCGVRDGLTVHL 85

>1yqb_A Ubiquilin 3; structural genomics consortium, ubiquitin, ubiquitin-like domain, structural genomics, signaling protein SGC; 2.00A {Homo sapiens} SCOP: d.15.1.1 Length = 100

 Score = 36.9 bits (86), Expect = 7e-04
 Identities = 13/43 (30%), Positives = 23/43 (53%)

Query: 3  IGDLKKAISEKTGLDPQEQKVLFRGKEKEDNEHLDVSGMKDKS 45
          I  LK+ IS++    P +  ++F GK  +D + L   G++D  
Sbjct: 44 IQQLKEEISQRFKAHPDQLVLIFAGKILKDPDSLAQCGVRDGL 86

>4fbj_B NEDD8; effector-HOST target complex, glutamine deamidase, deamidati bacterial effector, cell cycle-protein binding complex; 1.60A {Homo sapiens} PDB: 4f8c_B Length = 88

 Score = 36.5 bits (85), Expect = 7e-04
 Identities = 12/47 (25%), Positives = 26/47 (55%)

Query: 3  IGDLKKAISEKTGLDPQEQKVLFRGKEKEDNEHLDVSGMKDKSKVLL 49
          +  +K+ + EK G+ PQ+Q++++ GK+  D +      +   S + L
Sbjct: 23 VERIKERVEEKEGIPPQQQRLIYSGKQMNDEKTAADYKILGGSVLHL 69

>1v5o_A 1700011N24RIK protein; hypothetical protein, ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1 Length = 102

 Score = 36.5 bits (84), Expect = 8e-04
 Identities = 12/68 (17%), Positives = 31/68 (45%), Gaps = 1/68 (1%)

Query: 1  MMIGDLKKAISEKTGLDPQEQKVLFRGKE-KEDNEHLDVSGMKDKSKVLLLEELTNKEKK 59
            + + +     ++G+  +E ++++  +   +D+  L   G+KD   V+LL++     + 
Sbjct: 32 FELSNFRVLCELESGVPAEEAQIVYMEQLLTDDHCSLGSYGLKDGDMVVLLQKDNVGLRT 91

Query: 60 PKEVKDSP 67
          P      P
Sbjct: 92 PGRTPSGP 99

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	214
1m62_A	87	BAG-family molecular chaperone regulator-4; BAG do	99.86
1uk5_A	111	BAG-family molecular chaperone regulator-3; triple	99.85
1m7k_A	99	Silencer of death domains; three helix bundle, cha	99.84
3a8y_C	142	BAG family molecular chaperone regulator 5; BAG do	99.83
1ugo_A	99	BCL2-associated athanogene 5; triple helix bundle,	99.83
1i6z_A	135	BAG-family molecular chaperone regulator-1; triple	99.69
1hx1_B	114	BAG-1, BAG-family molecular chaperone regulator-1;	99.59
1t7s_A	137	BAG-1 cochaperone; structural genomics, PSI, prote	99.58
1wgg_A	96	Ubiquitin carboxyl-terminal hydrolase 14; ubiquiti	99.55
1wju_A	100	NEDD8 ultimate buster-1; ubiquitin-like domain, st	99.54
2bwf_A	77	Ubiquitin-like protein DSK2; signaling protein, UB	99.53
2kk8_A	84	Uncharacterized protein AT4G05270; solution arabid	99.51
1wxv_A	92	BAG-family molecular chaperone regulator-1; struct	99.51
2kd0_A	85	LRR repeats and ubiquitin-like domain-containing p	99.51
3phx_B	79	Ubiquitin-like protein ISG15; OTU domain, DE-ubiqu	99.51
1v5t_A	90	8430435I17RIK protein; hypothetical protein, ubiqu	99.51
2lxa_A	87	Ubiquitin-like protein MDY2; ubiquitin-like domain	99.51
2faz_A	78	Ubiquitin-like containing PHD and ring finger DOM	99.48
2dzi_A	81	Ubiquitin-like protein 4A; GDX, structural genomic	99.48
3v6c_B	91	Ubiquitin; structural genomics, structural genomic	99.47
2wyq_A	85	HHR23A, UV excision repair protein RAD23 homolog A	99.47
3plu_A	93	Ubiquitin-like modifier HUB1; ubiquitin-like, HUB-	99.46
1v86_A	95	DNA segment, CHR 7, wayne state university 128, ex	99.46
4eew_A	88	Large proline-rich protein BAG6; ubiquitin-like fo	99.45
1ndd_A	76	NEDD8, protein (ubiquitin-like protein NEDD8); pro	99.45
3m62_B	106	UV excision repair protein RAD23; armadillo-like r	99.45
4fbj_B	88	NEDD8; effector-HOST target complex, glutamine dea	99.45
3dbh_I	88	NEDD8; cell cycle, activating enzyme, apoptosis, m	99.45
4b6w_A	86	Tubulin-specific chaperone; CAP-Gly, ubiquitin-lik	99.45
4a20_A	98	Ubiquitin-like protein MDY2; protein binding, GET-	99.45
3m63_B	101	Ubiquitin domain-containing protein DSK2; armadill	99.44
2kan_A	94	Uncharacterized protein AR3433A; ubiquitin fold, a	99.44
2hj8_A	88	Interferon-induced 17 kDa protein; HR2873B, human	99.44
3a9j_A	76	Ubiquitin; protein complex, cytoplasm, isopeptide	99.44
1uel_A	95	HHR23B, UV excision repair protein RAD23 homolog B	99.43
2klc_A	101	Ubiquilin-1; ubiquitin-like, structural genomics,	99.43
4dwf_A	90	HLA-B-associated transcript 3; ubiquitin-like doma	99.43
1wgd_A	93	Homocysteine-responsive endoplasmic reticulum- res	99.43
3n3k_B	85	Ubiquitin; hydrolase, protease, thiol protease, DU	99.43
1wy8_A	89	NP95-like ring finger protein, isoform A; ubiquiti	99.42
3mtn_B	85	UBA80, ubcep1, ubiquitin variant UBV.21.4; ubiquit	99.42
1wh3_A	87	59 kDa 2'-5'-oligoadenylate synthetase like protei	99.42
1sif_A	88	Ubiquitin; hydrophobic mutants, folding, stability	99.41
1x1m_A	107	Ubiquitin-like protein SB132; structural genomics,	99.41
4hcn_B	98	Polyubiquitin, ubiquitin; ubiquitin/NEDD8 deamidas	99.41
1wx8_A	96	Riken cDNA 4931431F19; ubiquitin-like domain, ubiq	99.41
1wx7_A	106	Ubiquilin 3; ubiquitin-like domain, structural gen	99.4
3k9o_B	96	Ubiquitin, UBB+1; E2-25K, complex structure, ATP-b	99.4
1yqb_A	100	Ubiquilin 3; structural genomics consortium, ubiqu	99.4
1uh6_A	100	Ubiquitin-like 5; beta-grAsp fold, structural geno	99.4
1ttn_A	106	DC-UBP, dendritic cell-derived ubiquitin-like prot	99.4
2l7r_A	93	Ubiquitin-like protein FUBI; structural genomics,	99.39
2daf_A	118	FLJ35834 protein; hypothetical protein FLJ35834, u	99.39
2uyz_B	79	Small ubiquitin-related modifier 1; sumoylation, c	99.38
1v5o_A	102	1700011N24RIK protein; hypothetical protein, ubiqu	99.38
1yx5_B	98	Ubiquitin; proteasome, UIM, hydrolase; NMR {Homo s	99.37
1we6_A	111	Splicing factor, putative; structural genomics, ub	99.35
3b1l_X	76	E3 ubiquitin-protein ligase parkin; proteasome, AL	99.04
1j8c_A	125	Ubiquitin-like protein hplic-2; ubiquitin-like dom	99.35
4ajy_B	118	Transcription elongation factor B polypeptide 2; E	99.35
2kjr_A	95	CG11242; UBL, ubiquitin, ubiquitin-like, structura	99.34
2kj6_A	97	Tubulin folding cofactor B; methods development, N	99.34
3vdz_A	111	Ubiquitin-40S ribosomal protein S27A; gadolinium,	99.34
2kdb_A	99	Homocysteine-responsive endoplasmic reticulum- res	99.34
2kdi_A	114	Ubiquitin, vacuolar protein sorting-associated pro	99.33
1wyw_B	97	Ubiquitin-like protein SMT3C; hydrolase; 2.10A {Ho	99.33
2fnj_B	118	Transcription elongation factor B polypeptide 2; b	99.33
1we7_A	115	SF3A1 protein; structural genomics, ubiquitin-like	99.33
2ojr_A	111	Ubiquitin; lanthide-binding TAG, terbium, TB, SAD	99.31
4dbg_A	105	Ranbp-type and C3HC4-type zinc finger-containing;	99.31
1v6e_A	95	Cytoskeleton-associated protein 1; tubulin-specifi	99.29
3rt3_B	159	Ubiquitin-like protein ISG15; ubiquitin-like domai	99.28
3l0w_B	169	Monoubiquitinated proliferating cell nuclear antig	99.28
3shq_A	320	UBLCP1; phosphatase, hydrolase; 1.96A {Drosophila	99.26
3b08_A	152	Polyubiquitin-C, ubiquitin; protein complex, signa	99.25
3b08_A	152	Polyubiquitin-C, ubiquitin; protein complex, signa	99.24
2dzm_A	100	FAS-associated factor 1; ubiquitin-like domain, HF	99.23
1wgh_A	116	Ubiquitin-like 3, HCG-1 protein; ubiquitin-like fo	99.23
3u30_A	172	Ubiquitin, linear DI-ubiquitin; immune system; 2.4	99.22
3u5e_m	128	60S ribosomal protein L40; translation, ribosome,	99.22
3rt3_B	159	Ubiquitin-like protein ISG15; ubiquitin-like domai	99.22
1wia_A	95	Hypothetical ubiquitin-like protein (riken cDNA 20	99.21
3q3f_A	189	Ribonuclease/ubiquitin chimeric protein; domain SW	99.2
1se9_A	126	Ubiquitin family; ubiquitin-like, cell-free, wheat	99.19
1t0y_A	122	Tubulin folding cofactor B; ubiquitin-like, cytosk	99.18
1v2y_A	105	3300001G02RIK protein; hypothetical protein, ubiqu	99.18
2gow_A	125	HCG-1 protein, ubiquitin-like protein 3; BC059385,	99.15
2dzj_A	88	Synaptic glycoprotein SC2; ubiquitin-like fold, st	99.14
3u5c_f	152	40S ribosomal protein S31; translation, ribosome,	99.14
1wf9_A	107	NPL4 family protein; beta-grAsp fold like domain,	99.11
2kzr_A	86	Ubiquitin thioesterase OTU1; structural genomics,	99.06
1oqy_A	368	HHR23A, UV excision repair protein RAD23 homolog A	99.0
1wjn_A	97	Tubulin-folding protein TBCE; ubiquitin-like domai	98.98
2xzm_9	189	RPS31E; ribosome, translation; 3.93A {Tetrahymena	98.72
1wm3_A	72	Ubiquitin-like protein SMT3B; ubiquitin fold, half	98.69
2io1_B	94	Small ubiquitin-related modifier 3 precursor; SUMO	98.69
3a4r_A	79	Nfatc2-interacting protein; ubiquitin fold, coiled	98.68
2io0_B	91	Small ubiquitin-related modifier 2 precursor; SUMO	98.55
2d07_B	93	Ubiquitin-like protein SMT3B; hydrolase; 2.10A {Ho	98.51
1wz0_A	104	Ubiquitin-like protein SMT3B; SUMO-2, ubiquitin-li	98.47
2d9d_A	89	BAG family molecular chaperone regulator 5; triple	98.41
2k8h_A	110	Small ubiquitin protein; SUMO, post-translational	98.4
2eke_C	106	Ubiquitin-like protein SMT3; UBC9, SUMO binding mo	98.35
4efo_A	94	Serine/threonine-protein kinase TBK1; ubiquitin li	97.97
3kyd_D	115	Small ubiquitin-related modifier 1; SUMO, thioeste	97.91
3pge_A	200	SUMO-modified proliferating cell nuclear antigen;	97.82
2pjh_A	80	Protein NPL4, nuclear protein localization protein	97.55
3tix_A	207	Ubiquitin-like protein SMT3, RNA-induced transcri	97.54
3goe_A	82	DNA repair protein RAD60; SUMO-like domain, sumoyl	97.12
3v7o_A	227	Minor nucleoprotein VP30; ssgcid, seattle structur	97.12
2jxx_A	97	Nfatc2-interacting protein; nuclear factor of acti	96.91
3uf8_A	209	Ubiquitin-like protein SMT3, peptidyl-prolyl CIS-	96.42
3ix6_A	360	TS, tsase, thymidylate synthase; niaid, ssgcid, se	96.17
4da1_A	389	Protein phosphatase 1K, mitochondrial; metal-ION-a	95.93
2l76_A	95	Nfatc2-interacting protein; ubiquitin-like domain,	95.7
2bps_A	81	YUKD protein; ubiquitin-like protein, ubiquitin; 2	95.18
2al3_A	90	TUG long isoform; TUG UBL1 insulin, endocytosis/ex	95.14
2kc2_A	128	Talin-1, F1; FERM, adhesion, cell membrane, cell p	95.01
3qx1_A	84	FAS-associated factor 1; UBX, protein binding, P97	91.72
4a3p_A	217	Ubiquitin carboxyl-terminal hydrolase 15; 1.40A {H	89.45
3jyu_A	231	Ubiquitin carboxyl-terminal hydrolase; domain in u	88.99
2kvr_A	130	Ubiquitin carboxyl-terminal hydrolase 7; USP7, ubi	85.71
3onh_A	127	Ubiquitin-activating enzyme E1-like; ligase, SUMO	80.76

>1m62_A BAG-family molecular chaperone regulator-4; BAG domain, SODD, silencer of death domains, HSP70/HSC70 CO-chaperone; NMR {Homo sapiens} SCOP: a.7.7.1

Probab=99.86  E-value=1.1e-21  Score=147.64  Aligned_cols=75  Identities=29%  Similarity=0.399  Sum_probs=70.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCchhhhhHHHHHHHHHHhhcccccch--hhHHHHHHHHHHHHHHHHHH
Q 028093           83 ALQAIAGVRAEVDKLSERVASLEVAVNGGTKVPSEELDTSAELLMKELLKLDGIEAEG--EAKVQRKTEVRRVQKFHETL  160 (214)
Q Consensus        83 a~~aI~~i~~evd~L~~~V~~~e~~v~~~~k~~eke~~~L~E~Lm~~LlkLD~Ie~~G--d~R~~RK~~VkrVQ~~le~L  160 (214)
                      ++++|+.|+.+|++|+++|..|+      +++.|++|.+|+|+||++||+||+|+++|  ++|++||.+|++||++|+.|
T Consensus         9 a~~~I~~I~~ev~~L~~~V~~f~------g~~~dkey~~L~E~L~k~LLkLD~Ie~eG~~~~R~~RK~~Vk~iQ~~l~~L   82 (87)
T 1m62_A            9 SIKKIIHVLEKVQYLEQEVEEFV------GKKTDKAYWLLEEMLTKELLELDSVETGGQDSVRQARKEAVCKIQAILEKL   82 (87)
T ss_dssp             THHHHHHHHHHHHHHHHHHHHCC------CCTTSHHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHh------CCcchHHHHHHHHHHHHHHHHHCCcCcCCcHHHHHHHHHHHHHHHHHHHHH
Confidence            56899999999999999999993      56899999999999999999999999999  49999999999999999999


Q ss_pred             HHH
Q 028093          161 DNL  163 (214)
Q Consensus       161 D~~  163 (214)
                      |..
T Consensus        83 D~k   85 (87)
T 1m62_A           83 EKK   85 (87)
T ss_dssp             HHH
T ss_pred             Hhc
Confidence            984

>1uk5_A BAG-family molecular chaperone regulator-3; triple helix bandle, CAIR-1, BIS, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: a.7.7.1

Probab=99.85  E-value=1.7e-21  Score=152.40  Aligned_cols=81  Identities=28%  Similarity=0.401  Sum_probs=73.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCchhhhhHHHHHHHHHHhhcccccch--hhHHHHHHHHHHHHHHHHH
Q 028093           82 KALQAIAGVRAEVDKLSERVASLEVAVNGGTKVPSEELDTSAELLMKELLKLDGIEAEG--EAKVQRKTEVRRVQKFHET  159 (214)
Q Consensus        82 ~a~~aI~~i~~evd~L~~~V~~~e~~v~~~~k~~eke~~~L~E~Lm~~LlkLD~Ie~~G--d~R~~RK~~VkrVQ~~le~  159 (214)
                      .++++|+.|..+|++|+++|..|      .+++.|++|.+|+|+|||+|||||+|+++|  ++|++||.+||+||++|+.
T Consensus        27 p~~~~I~~I~~eV~~L~~qV~~f------~g~k~dkey~~L~E~L~k~LLkLD~IeteG~~~vR~aRK~aVk~iQ~~l~~  100 (111)
T 1uk5_A           27 PGVLKVEAILEKVQGLEQAVDSF------EGKKTDKKYLMIEEYLTKELLALDSVDPEGRADVRQARRDGVRKVQTILEK  100 (111)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHTC------CSCSSSHHHHHHHHHHHHHHHHHHSCCCSSCHHHHHHHHHHHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHHHHHHHHHH------cCCcchHHHHHHHHHHHHHHHHHCCcCcCCcHHHHHHHHHHHHHHHHHHHH
Confidence            35789999999999999999999      556699999999999999999999999999  4999999999999999999


Q ss_pred             HHHHHhhcC
Q 028093          160 LDNLKAINS  168 (214)
Q Consensus       160 LD~~k~~n~  168 (214)
                      ||.....++
T Consensus       101 LD~k~~~~~  109 (111)
T 1uk5_A          101 LEQKASGPS  109 (111)
T ss_dssp             HHHHHHCCC
T ss_pred             HHhcccCCC
Confidence            999765443

>1m7k_A Silencer of death domains; three helix bundle, chaperone; NMR {Homo sapiens} SCOP: a.7.7.1

Probab=99.84  E-value=5.4e-21  Score=146.92  Aligned_cols=76  Identities=29%  Similarity=0.392  Sum_probs=70.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCchhhhhHHHHHHHHHHhhcccccch--hhHHHHHHHHHHHHHHHHH
Q 028093           82 KALQAIAGVRAEVDKLSERVASLEVAVNGGTKVPSEELDTSAELLMKELLKLDGIEAEG--EAKVQRKTEVRRVQKFHET  159 (214)
Q Consensus        82 ~a~~aI~~i~~evd~L~~~V~~~e~~v~~~~k~~eke~~~L~E~Lm~~LlkLD~Ie~~G--d~R~~RK~~VkrVQ~~le~  159 (214)
                      .++++|..|+.+|++|+++|..|+      +++.+++|.+|+|+||++|||||+|+++|  ++|++||.+|++||++|+.
T Consensus        21 ~~~~kI~~I~~ev~~L~~~V~~f~------G~k~dkey~~L~E~L~k~LLkLD~IeteG~~~vR~~RK~~Vk~iQ~~l~~   94 (99)
T 1m7k_A           21 PSIKKIIHVLEKVQYLEQEVEEFV------GKKTDKAYWLLEEMLTKELLELDSVETGGQDSVRQARKEAVCKIQAILEK   94 (99)
T ss_dssp             CSHHHHHHHHHHHHHHHHHHHHCC------SCTTSHHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHHHHHHHHHHh------CCchHHHHHHHHHHHHHHHHHHCCcCcCCcHHHHHHHHHHHHHHHHHHHH
Confidence            567899999999999999999994      44599999999999999999999999999  4999999999999999999


Q ss_pred             HHHH
Q 028093          160 LDNL  163 (214)
Q Consensus       160 LD~~  163 (214)
                      ||..
T Consensus        95 LD~k   98 (99)
T 1m7k_A           95 LEKK   98 (99)
T ss_dssp             HHHT
T ss_pred             Hhcc
Confidence            9973

>3a8y_C BAG family molecular chaperone regulator 5; BAG domain, HSP70, ATPase domain, protein complex, triple helix, structural genomics, NPPSFA; 2.30A {Homo sapiens}

Probab=99.83  E-value=7.7e-21  Score=153.88  Aligned_cols=82  Identities=27%  Similarity=0.314  Sum_probs=75.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCchhhhhHHHHHHHHHHhhcccccchh--hHHHHHHHHHHHHHHHHH
Q 028093           82 KALQAIAGVRAEVDKLSERVASLEVAVNGGTKVPSEELDTSAELLMKELLKLDGIEAEGE--AKVQRKTEVRRVQKFHET  159 (214)
Q Consensus        82 ~a~~aI~~i~~evd~L~~~V~~~e~~v~~~~k~~eke~~~L~E~Lm~~LlkLD~Ie~~Gd--~R~~RK~~VkrVQ~~le~  159 (214)
                      .++++|..|+.+|++|+++|..|      .+++.+++|.+|+|+||++|||||+|+++|+  +|.+||.+|++||++|+.
T Consensus        31 p~~~aI~~V~~eVd~L~~eV~~F------~G~~~dkey~~L~E~L~k~LLKLD~IdteGd~~vR~aRK~aVk~VQ~~Le~  104 (142)
T 3a8y_C           31 PSHKAVWNVLGNLSEIQGEVLSF------DGNRTDKNYIRLEELLTKQLLALDAVDPQGEEKCKAARKQAVRLAQNILSY  104 (142)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHTC------CSCTTSHHHHHHHHHHHHHHHHHHTCCCTTCHHHHHHHHHHHHHHHHHHHH
T ss_pred             CchHHHHHHHHHHHHHHHHHHHh------cCCchHHHHHHHHHHHHHHHHHHcCcCCCCCHHHHHHHHHHHHHHHHHHHH
Confidence            46789999999999999999999      6668999999999999999999999999995  999999999999999999


Q ss_pred             HHHHHhhcCC
Q 028093          160 LDNLKAINSN  169 (214)
Q Consensus       160 LD~~k~~n~~  169 (214)
                      ||..+..+..
T Consensus       105 LD~k~~e~~~  114 (142)
T 3a8y_C          105 LDLKSDEWEY  114 (142)
T ss_dssp             HHHHHCBCCC
T ss_pred             HHHhhHHHHH
Confidence            9998876654

>1ugo_A BCL2-associated athanogene 5; triple helix bundle, riken structural genomics/proteomics initiative, RSGI, structural genomics, chaperone; NMR {Mus musculus} SCOP: a.7.7.1

Probab=99.83  E-value=7.6e-21  Score=146.07  Aligned_cols=76  Identities=16%  Similarity=0.382  Sum_probs=70.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCchhhhhHHHHHHHHHHhhcccccch--hhHHHHHHHHHHHHHHHHHH
Q 028093           83 ALQAIAGVRAEVDKLSERVASLEVAVNGGTKVPSEELDTSAELLMKELLKLDGIEAEG--EAKVQRKTEVRRVQKFHETL  160 (214)
Q Consensus        83 a~~aI~~i~~evd~L~~~V~~~e~~v~~~~k~~eke~~~L~E~Lm~~LlkLD~Ie~~G--d~R~~RK~~VkrVQ~~le~L  160 (214)
                      +.++|+.|+.+|++|+++|..|      .++++|++|.+|+|+||++|||||+|+++|  ++|++||.+|++||++|+.|
T Consensus        16 pi~kI~~I~~ev~~L~~~V~~f------~g~k~dkey~~L~E~L~k~LLkLD~IeteG~~~iR~~RK~~Vk~iQ~~l~~L   89 (99)
T 1ugo_A           16 SISRLQEIQREVKAIEPQVVGF------SGLSDDKNYKRLERILTKQLFEIDSVDTEGKGDIQQARKRAAQETERLLKEL   89 (99)
T ss_dssp             THHHHHHHHHHHHHSHHHHHTC------CCCTTSSHHHHHHHHHHHHHHHHHHSCCSSCHHHHHHHHHHHHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHHHHHHHHh------cCCchhHHHHHHHHHHHHHHHHHcCcCcCCcHHHHHHHHHHHHHHHHHHHHH
Confidence            4478899999999999999999      556689999999999999999999999999  56999999999999999999


Q ss_pred             HHHH
Q 028093          161 DNLK  164 (214)
Q Consensus       161 D~~k  164 (214)
                      |...
T Consensus        90 D~k~   93 (99)
T 1ugo_A           90 EQNA   93 (99)
T ss_dssp             HHHH
T ss_pred             Hhcc
Confidence            9855

>1i6z_A BAG-family molecular chaperone regulator-1; triple helix bundle; NMR {Mus musculus} SCOP: a.7.7.1

Probab=99.69  E-value=1.8e-17  Score=133.25  Aligned_cols=111  Identities=16%  Similarity=0.281  Sum_probs=94.2

Q ss_pred             CCCEEEEeccccccccCCcccCCCCcchhhhhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCC------c
Q 028093           43 DKSKVLLLEELTNKEKKPKEVKDSPEKKHEYAKDSEEMRKALQAIAGVRAEVDKLSERVASLEVAVNGGTKVP------S  116 (214)
Q Consensus        43 dgSki~Lv~~p~s~e~r~~~~~~s~~~~~~e~~k~~~~~~a~~aI~~i~~evd~L~~~V~~~e~~v~~~~k~~------e  116 (214)
                      +||+|||+|++.+++.            ..++++...+++++   ..+..+++.+..++.+|+++|...+.++      +
T Consensus         1 ~G~KvMviGkK~~pee------------e~~lKkL~dveksv---~~~~k~l~~l~~el~~iekGFL~k~l~~ea~~kl~   65 (135)
T 1i6z_A            1 GSPEFMLIGEKSNPEE------------EVELKKLKDLEVSA---EKIANHLQELNKELSGIQQGFLAKELQAEALCKLD   65 (135)
T ss_dssp             CCCCCSSSCCCCCHHH------------HHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHTSSSCHHHHHHHHHHHH
T ss_pred             CCceEEEeCCCCChHH------------HHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHhcchhhhhhhhHHHHHH
Confidence            6999999998777654            45566666666554   5556699999999999999999877543      7


Q ss_pred             hhhhhHHHHHHHHHHhhcccccch---hhHHHHHHHHHHHHHHHHHHHHHHhhcC
Q 028093          117 EELDTSAELLMKELLKLDGIEAEG---EAKVQRKTEVRRVQKFHETLDNLKAINS  168 (214)
Q Consensus       117 ke~~~L~E~Lm~~LlkLD~Ie~~G---d~R~~RK~~VkrVQ~~le~LD~~k~~n~  168 (214)
                      |++..++|++|+.|++||++.-.+   ++|.+||.+|++||.+|.+||.+.++..
T Consensus        66 Krik~~~E~~Mk~LE~LDs~~ip~~~~~~R~kRK~lV~~iQ~~L~~~D~l~~~~~  120 (135)
T 1i6z_A           66 RKVKATIEQFMKILEEIDTMVLPEQFKDSRLKRKNLVKKVQVFLAECDTVEQYIC  120 (135)
T ss_dssp             HHHHHHHHHHHHHHHHHHTCCCCSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHhccccCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            999999999999999999995433   9999999999999999999999998865

>1hx1_B BAG-1, BAG-family molecular chaperone regulator-1; protein-protein complex, apoptosis, protein folding, molecul chaperone; 1.90A {Homo sapiens} SCOP: a.7.7.1 PDB: 3fzf_B* 3fzh_B* 3fzk_B* 3fzl_B* 3fzm_B* 3ldq_B* 3m3z_B*

Probab=99.59  E-value=3.7e-15  Score=116.56  Aligned_cols=96  Identities=16%  Similarity=0.236  Sum_probs=82.5

Q ss_pred             hhhhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCC------CCCchhhhhHHHHHHHHHHhhccccc---chh
Q 028093           71 HEYAKDSEEMRKALQAIAGVRAEVDKLSERVASLEVAVNGGT------KVPSEELDTSAELLMKELLKLDGIEA---EGE  141 (214)
Q Consensus        71 ~~e~~k~~~~~~a~~aI~~i~~evd~L~~~V~~~e~~v~~~~------k~~eke~~~L~E~Lm~~LlkLD~Ie~---~Gd  141 (214)
                      ..++++...+++++   ..+..+++.++.++.+|+++|...+      ++-+|++..++|+||+.|++||++..   ..+
T Consensus         7 E~~lK~L~~veksv---~~~~kkl~~~~~el~~iekGFL~kel~~eal~kldKrik~~~E~~MK~LE~lDsl~i~e~~~~   83 (114)
T 1hx1_B            7 EVELKKLKHLEKSV---EKIADQLEELNKELTGIQQGFLPKDLQAEALCKLDRRVKATIEQFMKILEEIDTLILPENFKD   83 (114)
T ss_dssp             HHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHSCSCHHHHHHHHHTTHHHHHHHHHHHHHHHHHHTTCCCCTTCHH
T ss_pred             HHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHcccccHhHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCChhHHH
Confidence            44567777777666   5555599999999999999999987      45599999999999999999999943   449


Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHhhcCC
Q 028093          142 AKVQRKTEVRRVQKFHETLDNLKAINSN  169 (214)
Q Consensus       142 ~R~~RK~~VkrVQ~~le~LD~~k~~n~~  169 (214)
                      +|.+||.+|++||++|.+||.+.++.+.
T Consensus        84 ~R~kRK~lV~~iQ~~l~~cD~l~~~i~~  111 (114)
T 1hx1_B           84 SRLKRKGLVKKVQAFLAECDTVEQNICQ  111 (114)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHTTSSC
T ss_pred             HHHHHHHHHHHHHHHHHHhHHHHHHHHh
Confidence            9999999999999999999999988764

>1t7s_A BAG-1 cochaperone; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics, secsg; 2.80A {Caenorhabditis elegans} SCOP: a.7.7.1

Probab=99.58  E-value=4.5e-15  Score=119.39  Aligned_cols=110  Identities=19%  Similarity=0.134  Sum_probs=92.9

Q ss_pred             CEEEEeccccccccCCcccCCCCcchhhhhhchHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHhhCCCCCC------ch
Q 028093           45 SKVLLLEELTNKEKKPKEVKDSPEKKHEYAKDSEEMRKALQAIAGVRAEVDKLS-ERVASLEVAVNGGTKVP------SE  117 (214)
Q Consensus        45 Ski~Lv~~p~s~e~r~~~~~~s~~~~~~e~~k~~~~~~a~~aI~~i~~evd~L~-~~V~~~e~~v~~~~k~~------ek  117 (214)
                      ++||++|++.+++.            ..+.+....+++++..+   ..+++.+. .++.+++++|...+.++      +|
T Consensus         1 ~KvMvlGkk~~~ee------------d~~lK~L~~~Ek~~~~~---~~kl~~~n~~el~~iekGFL~k~l~~ea~kkldK   65 (137)
T 1t7s_A            1 DKIIVMGGKNALVD------------DAGFKMLMQYEKHNLSN---LQKAYDLNLRDVADLERGFLEKPKQVEMGKKLEK   65 (137)
T ss_dssp             CCCEEECSSSEEEC------------HHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHH
T ss_pred             CceeeeCCCCCcch------------hHHHHHHHHHHHHHHHH---HHHHHHccHHHHHHHHHhhhccHhHHhHHHHHHH
Confidence            58999999888766            46677777777666555   44999999 99999999999987544      69


Q ss_pred             hhhhHHHHHHHHHHhhcccc--c-----c--hhhHHHHHHHHHHHHHHHHHHHHHHhhcCC
Q 028093          118 ELDTSAELLMKELLKLDGIE--A-----E--GEAKVQRKTEVRRVQKFHETLDNLKAINSN  169 (214)
Q Consensus       118 e~~~L~E~Lm~~LlkLD~Ie--~-----~--Gd~R~~RK~~VkrVQ~~le~LD~~k~~n~~  169 (214)
                      ++..++|.+|+.|+.||++.  .     +  -++|.+||.+|++||.+|.+||.+.++...
T Consensus        66 rik~~~E~~MK~LE~LDsl~i~~~~t~~~q~~~~R~KRK~lV~~IQ~~L~~~D~l~~~i~~  126 (137)
T 1t7s_A           66 KVKYFNEEAERHLETLDGMNIITETTPENQAKRNREKRKTLVNGIQTLLNQNDALLRRLQE  126 (137)
T ss_dssp             HHHHHHHHHHHHHHHHHTEEECCCCCGGGSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHhhcccCCcccchhhHHHHHHHHHhhHHHHHHHHHHHhHHHHHHHHH
Confidence            99999999999999999992  1     2  489999999999999999999999988654

>1wgg_A Ubiquitin carboxyl-terminal hydrolase 14; ubiquitin specific protease 14, USP14, ubiquitin-like fold, structural genomics; NMR {Mus musculus} SCOP: d.15.1.1

Probab=99.55  E-value=6.6e-15  Score=110.83  Aligned_cols=54  Identities=24%  Similarity=0.297  Sum_probs=51.4

Q ss_pred             CcHHHHHHHHHHHhCCCCCCceEEecCeecCCcchhhhcCCCCCCEEEEeccccc
Q 028093            1 MMIGDLKKAISEKTGLDPQEQKVLFRGKEKEDNEHLDVSGMKDKSKVLLLEELTN   55 (214)
Q Consensus         1 ~Tv~~LK~~l~e~tGipp~~QKLifkGK~L~d~~~L~~~GvkdgSki~Lv~~p~s   55 (214)
                      .||++||.+|++.+|||+++|||||+||.|+|+ +|+.|||++|++||||+++..
T Consensus        28 ~TV~~lK~~I~~~tgip~~~QkLi~~Gk~L~D~-tL~~~~I~~g~~i~l~~~~~~   81 (96)
T 1wgg_A           28 EPPMVFKAQLFALTGVQPARQKVMVKGGTLKDD-DWGNIKMKNGMTVLMMGSADA   81 (96)
T ss_dssp             SCHHHHHHHHHHHTCCCTTTSCCEETTEECCSS-CCCSCCCCSSCEEECCCCCCC
T ss_pred             CcHHHHHHHHHHHHCcCHHHeEEEECCcCCCCC-CHHHCCCCCCCEEEEEecchh
Confidence            489999999999999999999999999999888 999999999999999998764

>1wju_A NEDD8 ultimate buster-1; ubiquitin-like domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Homo sapiens} SCOP: d.15.1.1

Probab=99.54  E-value=7.3e-15  Score=112.81  Aligned_cols=56  Identities=21%  Similarity=0.322  Sum_probs=52.4

Q ss_pred             CcHHHHHHHHHHHhCCCCCCceEEecCeecCCcchhhhcCCCCCCEEEEecccccc
Q 028093            1 MMIGDLKKAISEKTGLDPQEQKVLFRGKEKEDNEHLDVSGMKDKSKVLLLEELTNK   56 (214)
Q Consensus         1 ~Tv~~LK~~l~e~tGipp~~QKLifkGK~L~d~~~L~~~GvkdgSki~Lv~~p~s~   56 (214)
                      .||++||++|++++|+||++|||||+||.|+|+.+|++|||++||+||+|.-..+.
T Consensus        40 ~TV~~lK~kI~~k~gip~~qQrLI~~GKiL~D~~TL~~y~I~~gsti~vl~lrg~~   95 (100)
T 1wju_A           40 ITGRELRSKIAETFGLQENYIKIVINKKQLQLGKTLEEQGVAHNVKAMVLELKQSS   95 (100)
T ss_dssp             SBHHHHHHHHHHHTTCCSTTCEEEETTEECCTTSBHHHHTCCSSEEEEEECCCCCC
T ss_pred             CHHHHHHHHHHHHHCcCHHHeEEEeCCeECCCCCcHHHcCCCCCCEEEEEEECCCC
Confidence            48999999999999999999999999999999999999999999999999865554

>2bwf_A Ubiquitin-like protein DSK2; signaling protein, UBA, signaling proteins; 1.15A {Saccharomyces cerevisiae} SCOP: d.15.1.1 PDB: 2bwe_S

Probab=99.53  E-value=1.2e-14  Score=102.55  Aligned_cols=53  Identities=21%  Similarity=0.406  Sum_probs=50.8

Q ss_pred             CcHHHHHHHHHHHhCCCCCCceEEecCeecCCcchhhhcCCCCCCEEEEeccc
Q 028093            1 MMIGDLKKAISEKTGLDPQEQKVLFRGKEKEDNEHLDVSGMKDKSKVLLLEEL   53 (214)
Q Consensus         1 ~Tv~~LK~~l~e~tGipp~~QKLifkGK~L~d~~~L~~~GvkdgSki~Lv~~p   53 (214)
                      .||++||.+|++.+|+|++.|||+|+|+.|+|+.+|++|||++|++|||+.++
T Consensus        24 ~tV~~LK~~i~~~~~i~~~~qrL~~~gk~L~d~~tL~~~~i~~g~~i~l~~~~   76 (77)
T 2bwf_A           24 STVLQFKEAINKANGIPVANQRLIYSGKILKDDQTVESYHIQDGHSVHLVKSQ   76 (77)
T ss_dssp             CBHHHHHHHHHHHHCCCGGGEEEEETTEECCTTSBTGGGTCCTTCEEEEEECC
T ss_pred             CcHHHHHHHHHHHhCCCHHHEEEEECCeEcCCCCCHHHcCCCCCCEEEEEEcC
Confidence            48999999999999999999999999999999999999999999999999865

>2kk8_A Uncharacterized protein AT4G05270; solution arabidopsis thaliana, uncharacterized putative protein, NESG, structural genomics; NMR {Arabidopsis thaliana}

Probab=99.51  E-value=1.2e-14  Score=106.79  Aligned_cols=53  Identities=11%  Similarity=0.108  Sum_probs=50.8

Q ss_pred             CcHHHHHHHHHHHhCCCCCCceEEecCee-cCCcchhhhcCCCCCCEEEEeccc
Q 028093            1 MMIGDLKKAISEKTGLDPQEQKVLFRGKE-KEDNEHLDVSGMKDKSKVLLLEEL   53 (214)
Q Consensus         1 ~Tv~~LK~~l~e~tGipp~~QKLifkGK~-L~d~~~L~~~GvkdgSki~Lv~~p   53 (214)
                      .||++||.+|++.+|+||++|||+|+|+. |+|+.+|.+|||++||+|+|+..|
T Consensus        31 ~TV~~LK~~I~~~~gip~~~QrLi~~Gk~lL~D~~tL~~y~I~~gs~i~lv~~p   84 (84)
T 2kk8_A           31 DTLLVVKQKIERSQHIPVSKQTLIVDGIVILREDLTVEQCQIVPTSDIQLEVSS   84 (84)
T ss_dssp             SBHHHHHHHHHHHHTCCGGGEEEEETTEECCCSSSBHHHHTCCTTSCEEEEECC
T ss_pred             ChHHHHHHHHHHHHCcChHHEEEEECCEEecCCcCCHHHcCCCCCCEEEEEEcC
Confidence            48999999999999999999999999999 999999999999999999999865

>1wxv_A BAG-family molecular chaperone regulator-1; structural genomics, apoptosis, riken structural genomics/proteomics initiative, RSGI, NPPSFA; NMR {Homo sapiens} SCOP: d.15.1.1

Probab=99.51  E-value=1.9e-14  Score=106.25  Aligned_cols=55  Identities=25%  Similarity=0.507  Sum_probs=51.1

Q ss_pred             CcHHHHHHHHHHHhCCCCCCceEEecCeecCC-cchhhhcCCCCCCEEEEeccccc
Q 028093            1 MMIGDLKKAISEKTGLDPQEQKVLFRGKEKED-NEHLDVSGMKDKSKVLLLEELTN   55 (214)
Q Consensus         1 ~Tv~~LK~~l~e~tGipp~~QKLifkGK~L~d-~~~L~~~GvkdgSki~Lv~~p~s   55 (214)
                      .||++||++|++.+|+||++|||+|+||.|+| +.+|..|||++|++|||+..+..
T Consensus        32 ~TV~~LK~~i~~~~gip~~~qrL~~~Gk~L~D~~~~L~~~~i~~g~~i~l~~~~~~   87 (92)
T 1wxv_A           32 PVVQDLAQVVEEVIGVPQSFQKLIFKGKSLKEMETPLSALGIQDGCRVMLIGKKNS   87 (92)
T ss_dssp             CBHHHHHHHHHHHTCCCTTTCEEEETTEEECCSSSBHHHHTCCSSEEEEEESCCSC
T ss_pred             CcHHHHHHHHHHHHCcCHHHEEEEECCeecCCCcccHHHCCCCCCCEEEEEecCCC
Confidence            48999999999999999999999999999977 66899999999999999997654

>2kd0_A LRR repeats and ubiquitin-like domain-containing protein AT2G30105; ubiquitin-like protein, NESG, leucine-rich repeat, structural genomics; NMR {Arabidopsis thaliana}

Probab=99.51  E-value=1.9e-14  Score=105.65  Aligned_cols=53  Identities=26%  Similarity=0.431  Sum_probs=51.0

Q ss_pred             CcHHHHHHHHHHHhCCCCCCceEEecCeecCCcchhhhcCCCCCCEEEEeccc
Q 028093            1 MMIGDLKKAISEKTGLDPQEQKVLFRGKEKEDNEHLDVSGMKDKSKVLLLEEL   53 (214)
Q Consensus         1 ~Tv~~LK~~l~e~tGipp~~QKLifkGK~L~d~~~L~~~GvkdgSki~Lv~~p   53 (214)
                      .||++||.+|++.+|+||++|||+|+||.|+|+.+|.+|||++|++|+|+.+|
T Consensus        32 ~TV~~LK~~I~~~~gip~~~qrL~~~Gk~L~D~~tL~~~gi~~g~~l~l~~s~   84 (85)
T 2kd0_A           32 CTVKDLKSQLQPITNVLPRGQKLIFKGKVLVETSTLKQSDVGSGAKLMLMASQ   84 (85)
T ss_dssp             SBHHHHHHHHHHHHCCCTTTCEEEETTEECCTTCBTTTTTCCTTEEEEEECCC
T ss_pred             CcHHHHHHHHHHHHCcChHHEEEEECCeECCCcCCHHHCCCCCCCEEEEEEeC
Confidence            48999999999999999999999999999999999999999999999999865

>3phx_B Ubiquitin-like protein ISG15; OTU domain, DE-ubiquitinase, DE-isgylase, hydrolase-protein complex; 1.60A {Homo sapiens}

Probab=99.51  E-value=2.1e-14  Score=102.50  Aligned_cols=52  Identities=27%  Similarity=0.317  Sum_probs=49.9

Q ss_pred             CcHHHHHHHHHHHhCCCCCCceEEecCeecCCcchhhhcCCCCCCEEEEecc
Q 028093            1 MMIGDLKKAISEKTGLDPQEQKVLFRGKEKEDNEHLDVSGMKDKSKVLLLEE   52 (214)
Q Consensus         1 ~Tv~~LK~~l~e~tGipp~~QKLifkGK~L~d~~~L~~~GvkdgSki~Lv~~   52 (214)
                      .||++||.+|++.+|+||++|||+|+|+.|+|+.+|++|||++||+|||+..
T Consensus        25 ~tV~~lK~~i~~~~gip~~~qrL~~~G~~L~d~~tL~~~~i~~~~~l~l~~r   76 (79)
T 3phx_B           25 QTVAHLKQQVSGLEGVQDDLFWLTFEGKPLEDQLPLGEYGLKPLSTVFMNLR   76 (79)
T ss_dssp             SBHHHHHHHHHHHHTCCGGGEEEEETTEECCTTSBGGGGTCCTTCEEEEEEC
T ss_pred             ChHHHHHHHHHhhcCCCHHHEEEEECCEECCCCCcHHHCCCCCCCEEEEEEe
Confidence            4899999999999999999999999999999999999999999999999864

>1v5t_A 8430435I17RIK protein; hypothetical protein, ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1 PDB: 2kx3_A

Probab=99.51  E-value=2.2e-14  Score=106.27  Aligned_cols=55  Identities=27%  Similarity=0.453  Sum_probs=52.3

Q ss_pred             CcHHHHHHHHHHHhCCCCCCceEE---ecCeecCCcchhhhcCCCCCCEEEEeccccc
Q 028093            1 MMIGDLKKAISEKTGLDPQEQKVL---FRGKEKEDNEHLDVSGMKDKSKVLLLEELTN   55 (214)
Q Consensus         1 ~Tv~~LK~~l~e~tGipp~~QKLi---fkGK~L~d~~~L~~~GvkdgSki~Lv~~p~s   55 (214)
                      .||++||.+|++.+||||++|||+   |+||.|+|+.+|+.|||++|++||||+.+..
T Consensus        28 ~TV~~lK~~I~~~~gip~~~QkLi~~k~~Gk~L~D~~~L~~~~i~~g~~l~l~~~~~~   85 (90)
T 1v5t_A           28 DTVLDLKQFLKTLTGVLPERQKLLGLKVKGKPAENDVKLGALKLKPNTKIMMMGTRES   85 (90)
T ss_dssp             SBHHHHHHHHHHHTCCCTTTCEEESCEETTEECCTTSBHHHHTCCTTEEEEEECCCSS
T ss_pred             CCHHHHHHHHHHHHCcCHHHeEEEeeccCCcCcCCCCCHHHcCCCCCCEEEEEecCcc
Confidence            489999999999999999999999   9999999999999999999999999998653

>2lxa_A Ubiquitin-like protein MDY2; ubiquitin-like domain, protein-protein interaction, SGT2 BIN domain, GET pathway, protein binding; NMR {Saccharomyces cerevisiae}

Probab=99.51  E-value=1.2e-14  Score=108.38  Aligned_cols=56  Identities=23%  Similarity=0.243  Sum_probs=53.0

Q ss_pred             CcHHHHHHHH-HHHhCCCCCCceEEecCeecCCcchhhhcCC-CCCCEEEEecccccc
Q 028093            1 MMIGDLKKAI-SEKTGLDPQEQKVLFRGKEKEDNEHLDVSGM-KDKSKVLLLEELTNK   56 (214)
Q Consensus         1 ~Tv~~LK~~l-~e~tGipp~~QKLifkGK~L~d~~~L~~~Gv-kdgSki~Lv~~p~s~   56 (214)
                      .||++||++| ++.+|+||++|||||+||.|+|+.+|++||| .+|++|+|++.|.-.
T Consensus        24 ~TV~~lK~~I~~~~~gip~~~QrLi~~Gk~L~D~~tL~~y~I~~~~stl~v~~~~~~~   81 (87)
T 2lxa_A           24 DTILQIKQHLISEEKASHISEIKLLLKGKVLHDNLFLSDLKVTPANSTITVMIKPNLE   81 (87)
T ss_dssp             CBHHHHHHHHHHTTSCSSSTTEEEEETTEECCTTCBHHHHCCCGGGCEEEEEECCCCC
T ss_pred             CcHHHHHHHHHHHhcCCChHHEEEEECCEECcCcCCHHHcCCCCCCCEEEEEcCCCcc
Confidence            4899999999 9999999999999999999999999999999 699999999998754

>2faz_A Ubiquitin-like containing PHD and ring finger DOM protein 1; cell cycle, DNA damage, DNA repair, DNA-binding, ligase, Met binding, nuclear protein; 2.00A {Homo sapiens} SCOP: d.15.1.1

Probab=99.48  E-value=4.5e-14  Score=100.36  Aligned_cols=53  Identities=25%  Similarity=0.393  Sum_probs=50.5

Q ss_pred             CcHHHHHHHHHHHhCCCCCCceEEecCeecCCcchhhhcCCCCCCEEEEeccc
Q 028093            1 MMIGDLKKAISEKTGLDPQEQKVLFRGKEKEDNEHLDVSGMKDKSKVLLLEEL   53 (214)
Q Consensus         1 ~Tv~~LK~~l~e~tGipp~~QKLifkGK~L~d~~~L~~~GvkdgSki~Lv~~p   53 (214)
                      .||++||.+|++.+|+|+++|||+|+|+.|+|+.+|.+|||++|++|||+..+
T Consensus        25 ~tv~~lK~~i~~~~gip~~~qrL~~~g~~L~d~~tL~~~~i~~g~~i~l~~r~   77 (78)
T 2faz_A           25 TKVEELRRKIQELFHVEPGLQRLFYRGKQMEDGHTLFDYEVRLNDTIQLLVRQ   77 (78)
T ss_dssp             CBHHHHHHHHHHHHCCCGGGEEEEETTEECCTTCBTTTTTCCTTCEEEEEECC
T ss_pred             CCHHHHHHHHHHHHCcChhhEEEEECCEECCCCCCHHHcCCCCCCEEEEEEeC
Confidence            48999999999999999999999999999999999999999999999998753

>2dzi_A Ubiquitin-like protein 4A; GDX, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.48  E-value=4.4e-14  Score=100.51  Aligned_cols=53  Identities=28%  Similarity=0.439  Sum_probs=50.5

Q ss_pred             CcHHHHHHHHHHHhCCCCCCceEEecCeecCCcchhhhcCCCCCCEEEEeccc
Q 028093            1 MMIGDLKKAISEKTGLDPQEQKVLFRGKEKEDNEHLDVSGMKDKSKVLLLEEL   53 (214)
Q Consensus         1 ~Tv~~LK~~l~e~tGipp~~QKLifkGK~L~d~~~L~~~GvkdgSki~Lv~~p   53 (214)
                      .||++||++|++.+|+|++.|||+|+|+.|+|+.+|.+|||++|++|||+..+
T Consensus        28 ~tV~~LK~~i~~~~~i~~~~qrL~~~gk~L~d~~tL~~~~i~~g~~i~l~~~~   80 (81)
T 2dzi_A           28 ELVSTLKQLVSEKLNVPVRQQRLLFKGKALADGKRLSDYSIGPNSKLNLVVKP   80 (81)
T ss_dssp             CBHHHHHHHHHHHTCCCTTTCEEEETTEECCTTSBGGGGTCCSSBCCEEECCC
T ss_pred             CcHHHHHHHHHHHHCcCHHHEEEEECCeECCCCCcHHHcCCCCCCEEEEEEeC
Confidence            48999999999999999999999999999999999999999999999998753

>3v6c_B Ubiquitin; structural genomics, structural genomics consortium, SGC, UB protease, hydrolase-signaling protein complex; 1.70A {Homo sapiens} PDB: 3v6e_B

Probab=99.47  E-value=5.9e-14  Score=103.34  Aligned_cols=52  Identities=29%  Similarity=0.519  Sum_probs=49.9

Q ss_pred             CcHHHHHHHHHHHhCCCCCCceEEecCeecCCcchhhhcCCCCCCEEEEecc
Q 028093            1 MMIGDLKKAISEKTGLDPQEQKVLFRGKEKEDNEHLDVSGMKDKSKVLLLEE   52 (214)
Q Consensus         1 ~Tv~~LK~~l~e~tGipp~~QKLifkGK~L~d~~~L~~~GvkdgSki~Lv~~   52 (214)
                      .||++||.+|++.+|+|+++|||+|+|+.|+|+.+|.+|||++|++|+|+..
T Consensus        38 ~TV~~LK~~I~~~~gip~~~qrL~~~Gk~L~D~~tL~~~gi~~g~~i~l~~r   89 (91)
T 3v6c_B           38 DTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLR   89 (91)
T ss_dssp             CBHHHHHHHHHHHHCCCGGGCEEEETTEECCTTCBTGGGTCCTTCEEEEECC
T ss_pred             CCHHHHHHHHHhhhCCChhhEEEEECCeECCCcCcHHHCCCCCCCEEEEEEe
Confidence            4899999999999999999999999999999999999999999999999863

>2wyq_A HHR23A, UV excision repair protein RAD23 homolog A; DNA binding protein, DNA excision repair, proteasomal degrad polyubiquitin; 1.65A {Homo sapiens} PDB: 1p98_A 1p9d_U 1p1a_A

Probab=99.47  E-value=6.3e-14  Score=100.93  Aligned_cols=53  Identities=19%  Similarity=0.265  Sum_probs=50.0

Q ss_pred             CcHHHHHHHHHHH---hCCCCCCceEEecCeecCCcchhhhcCCCCCCEEEEeccc
Q 028093            1 MMIGDLKKAISEK---TGLDPQEQKVLFRGKEKEDNEHLDVSGMKDKSKVLLLEEL   53 (214)
Q Consensus         1 ~Tv~~LK~~l~e~---tGipp~~QKLifkGK~L~d~~~L~~~GvkdgSki~Lv~~p   53 (214)
                      .||++||++|++.   +|+|+++|||+|+|+.|+|+.+|++|||++|++|||+..+
T Consensus        26 ~TV~~lK~~i~~~~~~~gip~~~qrLi~~Gk~L~D~~tL~~~~i~~g~~i~l~~~~   81 (85)
T 2wyq_A           26 ETVKVLKEKIEAEKGRDAFPVAGQKLIYAGKILSDDVPIRDYRIDEKNFVVVMVTK   81 (85)
T ss_dssp             SBHHHHHHHHHHHHCTTTCCGGGEEEEETTEECCTTSBGGGGCCCTTSEEEEEEC-
T ss_pred             CCHHHHHHHHHhhccccCCCHHHeEEEECCEECcCCCCHHHcCCCCCCEEEEEEcC
Confidence            4899999999998   9999999999999999999999999999999999999864

>3plu_A Ubiquitin-like modifier HUB1; ubiquitin-like, HUB-1, SNU66, peptide binding protein; 1.40A {Saccharomyces cerevisiae} PDB: 3plv_A 1m94_A 1p0r_A

Probab=99.46  E-value=5.7e-14  Score=106.76  Aligned_cols=50  Identities=24%  Similarity=0.343  Sum_probs=48.4

Q ss_pred             CcHHHHHHHHHHHhCCCCCCceEEecCeecCCcchhhhcCCCCCCEEEEe
Q 028093            1 MMIGDLKKAISEKTGLDPQEQKVLFRGKEKEDNEHLDVSGMKDKSKVLLL   50 (214)
Q Consensus         1 ~Tv~~LK~~l~e~tGipp~~QKLifkGK~L~d~~~L~~~GvkdgSki~Lv   50 (214)
                      .||++||++|++++|+||++|||+|.|++|+|..+|.+|||++|++|+|.
T Consensus        42 DTI~~LK~~I~~k~Gip~~qQrLif~Gk~LkD~~TL~dY~I~dgstLhL~   91 (93)
T 3plu_A           42 DSVGDFKKVLSLQIGTQPNKIVLQKGGSVLKDHISLEDYEVHDQTNLELY   91 (93)
T ss_dssp             SBHHHHHHHHHHHHTCCGGGEEEEETTEECCTTSBTGGGTCCTTCEEEEE
T ss_pred             CHHHHHHHHHHHHhCCCHHHEEEEeCCEEccCcCCHHHcCCCCCCEEEEE
Confidence            48999999999999999999999999999999999999999999999984

>1v86_A DNA segment, CHR 7, wayne state university 128, expressed; ubiquitin fold, structural genomics, D7WSU128E protein; HET: DNA; NMR {Mus musculus} SCOP: d.15.1.1

Probab=99.46  E-value=3.9e-14  Score=106.10  Aligned_cols=54  Identities=28%  Similarity=0.418  Sum_probs=49.9

Q ss_pred             CcHHHHHHHHHHHhCCCCCCceEEecCeecCCcchhhhcCCCCCCEEEEeccccc
Q 028093            1 MMIGDLKKAISEKTGLDPQEQKVLFRGKEKEDNEHLDVSGMKDKSKVLLLEELTN   55 (214)
Q Consensus         1 ~Tv~~LK~~l~e~tGipp~~QKLifkGK~L~d~~~L~~~GvkdgSki~Lv~~p~s   55 (214)
                      .||.+||++|++.+||||++|||+|+||.|+|. +|..|||++|++|||++.+.+
T Consensus        37 ~TV~~LK~~I~~~tgip~~~QrL~~~Gk~Ldd~-tL~~~~i~~g~~i~lv~~~~~   90 (95)
T 1v86_A           37 STGSELKQKIHSITGLPPAMQKVMYKGLVPEDK-TLREIKVTSGAKIMVVGSTIS   90 (95)
T ss_dssp             SBHHHHHHHHHHHHCSCSTTCCCBSSSBCCSSS-BHHHHCCCTTEEEEECCSSCC
T ss_pred             CcHHHHHHHHHHHHCcCHHHeEEEECCeeCCcC-cHHHCCCCCCCEEEEEecccc
Confidence            489999999999999999999999999999555 999999999999999997643

>4eew_A Large proline-rich protein BAG6; ubiquitin-like fold, GP78-binding, chaperone; 1.30A {Homo sapiens}

Probab=99.45  E-value=7e-14  Score=101.83  Aligned_cols=50  Identities=18%  Similarity=0.446  Sum_probs=48.1

Q ss_pred             CcHHHHHHHHHHHhCCCCCCceEEecCeecCCcchhhhcCCCCCCEEEEec
Q 028093            1 MMIGDLKKAISEKTGLDPQEQKVLFRGKEKEDNEHLDVSGMKDKSKVLLLE   51 (214)
Q Consensus         1 ~Tv~~LK~~l~e~tGipp~~QKLifkGK~L~d~~~L~~~GvkdgSki~Lv~   51 (214)
                      .||++||.+|++.+|+||++|||+|+|+.|+|+.+|..||| +|++|||+.
T Consensus        38 ~tV~~lK~~i~~~~gip~~~qrLi~~Gk~L~D~~tL~~~~i-~g~~i~lv~   87 (88)
T 4eew_A           38 MNVKEFKEHIAASVSIPSEKQRLIYQGRVLQDDKKLQEYNV-GGKVIHLVE   87 (88)
T ss_dssp             CBHHHHHHHHHHHHTCCGGGEEEEETTEECCTTSBGGGGTC-TTEEEEEEE
T ss_pred             CCHHHHHHHHHHHhCCCHHHEEEEECCEECCCCCcHHHcCC-CCcEEEEEE
Confidence            48999999999999999999999999999999999999999 899999985

>1ndd_A NEDD8, protein (ubiquitin-like protein NEDD8); proteolysis, signaling protei; 1.60A {Homo sapiens} SCOP: d.15.1.1 PDB: 1r4m_I 1r4n_I* 1xt9_B 2ko3_A 3gzn_I* 2bkr_B 2nvu_I* 3dqv_A 1bt0_A

Probab=99.45  E-value=1e-13  Score=96.92  Aligned_cols=52  Identities=23%  Similarity=0.403  Sum_probs=49.8

Q ss_pred             CcHHHHHHHHHHHhCCCCCCceEEecCeecCCcchhhhcCCCCCCEEEEecc
Q 028093            1 MMIGDLKKAISEKTGLDPQEQKVLFRGKEKEDNEHLDVSGMKDKSKVLLLEE   52 (214)
Q Consensus         1 ~Tv~~LK~~l~e~tGipp~~QKLifkGK~L~d~~~L~~~GvkdgSki~Lv~~   52 (214)
                      .||++||.+|++.+|+|++.|||+|+|+.|+|+.+|++|||++|++|+|+..
T Consensus        21 ~tv~~lK~~i~~~~~i~~~~q~L~~~g~~L~d~~tL~~~~i~~g~~i~l~~~   72 (76)
T 1ndd_A           21 DKVERIKERVEEKEGIPPQQQRLIYSGKQMNDEKTAADYKILGGSVLHLVLA   72 (76)
T ss_dssp             CBHHHHHHHHHHHHCCCGGGEEEEETTEECCTTSBGGGGTCCTTCEEEEEEC
T ss_pred             ChHHHHHHHHHHHHCcChHHEEEEECCEECCCCCcHHHcCCCCCCEEEEEEe
Confidence            4899999999999999999999999999999999999999999999999864

>3m62_B UV excision repair protein RAD23; armadillo-like repeats, UBL conjugation pathway, DNA damage, nucleus, phosphoprotein; HET: 1PE; 2.40A {Saccharomyces cerevisiae}

Probab=99.45  E-value=6.7e-14  Score=106.75  Aligned_cols=53  Identities=19%  Similarity=0.375  Sum_probs=50.9

Q ss_pred             CcHHHHHHHHHHHhCCCCCCceEEecCeecCCcchhhhcCCCCCCEEEEeccc
Q 028093            1 MMIGDLKKAISEKTGLDPQEQKVLFRGKEKEDNEHLDVSGMKDKSKVLLLEEL   53 (214)
Q Consensus         1 ~Tv~~LK~~l~e~tGipp~~QKLifkGK~L~d~~~L~~~GvkdgSki~Lv~~p   53 (214)
                      .||++||.+|++.+|+|+++|||||+||.|+|+.+|.+|||++|++|+|+..+
T Consensus        22 ~TV~~LK~~I~~~~gip~~~QrLi~~Gk~L~D~~tL~~~~i~~g~~i~lv~~~   74 (106)
T 3m62_B           22 NTILETKTKLAQSISCEESQIKLIYSGKVLQDSKTVSECGLKDGDQVVFMVSQ   74 (106)
T ss_dssp             SBHHHHHHHHHHTTTSCGGGCEEEETTEECCTTSBTTTTTCCTTCEEEEECCC
T ss_pred             CcHHHHHHHHHHHHCCChhhEEEEECCEECCCcCCHHHcCCCCCCEEEEEEcC
Confidence            48999999999999999999999999999999999999999999999999863

>4fbj_B NEDD8; effector-HOST target complex, glutamine deamidase, deamidati bacterial effector, cell cycle-protein binding complex; 1.60A {Homo sapiens} PDB: 4f8c_B

Probab=99.45  E-value=8.5e-14  Score=102.38  Aligned_cols=52  Identities=23%  Similarity=0.403  Sum_probs=50.1

Q ss_pred             CcHHHHHHHHHHHhCCCCCCceEEecCeecCCcchhhhcCCCCCCEEEEecc
Q 028093            1 MMIGDLKKAISEKTGLDPQEQKVLFRGKEKEDNEHLDVSGMKDKSKVLLLEE   52 (214)
Q Consensus         1 ~Tv~~LK~~l~e~tGipp~~QKLifkGK~L~d~~~L~~~GvkdgSki~Lv~~   52 (214)
                      .||.+||.+|++.+|+|+++|||+|+|+.|+|+.+|.+|||++|++|+|+..
T Consensus        21 ~TV~~LK~~I~~~~gip~~~qrLi~~Gk~L~D~~tL~~~~i~~g~~l~l~~r   72 (88)
T 4fbj_B           21 DKVERIKERVEEKEGIPPQQQRLIYSGKQMNDEKTAADYKILGGSVLHLVLA   72 (88)
T ss_dssp             CBHHHHHHHHHHHHCCCGGGCEEEETTEECCTTSBTTTTTCCTTCEEEEECB
T ss_pred             CCHHHHHHHHHHHHCcChhHEEEEECCeECCCCCcHHHcCCCCCCEEEEEEE
Confidence            4899999999999999999999999999999999999999999999999965

>3dbh_I NEDD8; cell cycle, activating enzyme, apoptosis, membrane, UBL conjugation pathway, ATP-binding, ligase, nucleotide- binding, polymorphism; 2.85A {Homo sapiens} SCOP: d.15.1.1 PDB: 3dbr_I 3dbl_I

Probab=99.45  E-value=8.7e-14  Score=100.59  Aligned_cols=52  Identities=23%  Similarity=0.406  Sum_probs=49.9

Q ss_pred             CcHHHHHHHHHHHhCCCCCCceEEecCeecCCcchhhhcCCCCCCEEEEecc
Q 028093            1 MMIGDLKKAISEKTGLDPQEQKVLFRGKEKEDNEHLDVSGMKDKSKVLLLEE   52 (214)
Q Consensus         1 ~Tv~~LK~~l~e~tGipp~~QKLifkGK~L~d~~~L~~~GvkdgSki~Lv~~   52 (214)
                      .||.+||.+|++.+|+||+.|||+|+|+.|+|+.+|.+|||++|++|||+..
T Consensus        33 ~tV~~lK~~i~~~~gip~~~qrL~~~G~~L~d~~tL~~~~i~~~~~i~l~~r   84 (88)
T 3dbh_I           33 DKVERIKERVEEKEGIPPQQQRLIYSGKQMNDEKTAADYKILGGSVLHLVLR   84 (88)
T ss_dssp             CBHHHHHHHHHHHHCCCGGGCCEEETTEECCTTSBGGGGTCCTTCEEEECCC
T ss_pred             CCHHHHHHHHHHHHCcCHHHEEEEECCeECCCCCcHHHcCCCCCCEEEEEEe
Confidence            4899999999999999999999999999999999999999999999999864

>4b6w_A Tubulin-specific chaperone; CAP-Gly, ubiquitin-like; HET: MSE; 2.35A {Trypanosoma brucei brucei strain 927}

Probab=99.45  E-value=5.4e-14  Score=104.42  Aligned_cols=52  Identities=12%  Similarity=0.192  Sum_probs=49.2

Q ss_pred             CcHHHHHHHHHHHhCCCCCCceEEec-------CeecCCcchhhhcCCCCCCEEEEecc
Q 028093            1 MMIGDLKKAISEKTGLDPQEQKVLFR-------GKEKEDNEHLDVSGMKDKSKVLLLEE   52 (214)
Q Consensus         1 ~Tv~~LK~~l~e~tGipp~~QKLifk-------GK~L~d~~~L~~~GvkdgSki~Lv~~   52 (214)
                      +||++||.+|+..+||||++|||||+       |+.++|+.+|..|||++|++|||+..
T Consensus        25 ~TI~~lK~ki~~~~Gip~~~QrLi~~~~~~~~~g~~l~d~~tL~~Y~i~~g~~ihlvd~   83 (86)
T 4b6w_A           25 QTIESIKENVFTHFATPPEYMQLQLIDDRGITIEKNMANDKQLGYYQCRDEFVIHVVDL   83 (86)
T ss_dssp             SBHHHHHHHHHTTSCCCGGGEEEEEECTTSCEEESSCCTTSBGGGGTCCTTCEEEEEEC
T ss_pred             CcHHHHHHHHHHHHCCCHHHEEEEEecCCCCceeeEcCCCCCHHHCCCCCCCEEEEEeC
Confidence            58999999999999999999999975       88999999999999999999999974

>4a20_A Ubiquitin-like protein MDY2; protein binding, GET-pathway, tail-anchored proteins; 1.78A {Saccharomyces cerevisiae} PDB: 2lxc_A 4goc_A

Probab=99.45  E-value=6.6e-14  Score=106.54  Aligned_cols=53  Identities=25%  Similarity=0.265  Sum_probs=50.5

Q ss_pred             CcHHHHHHHH-HHHhCCCCCCceEEecCeecCCcchhhhcCC-CCCCEEEEeccc
Q 028093            1 MMIGDLKKAI-SEKTGLDPQEQKVLFRGKEKEDNEHLDVSGM-KDKSKVLLLEEL   53 (214)
Q Consensus         1 ~Tv~~LK~~l-~e~tGipp~~QKLifkGK~L~d~~~L~~~Gv-kdgSki~Lv~~p   53 (214)
                      .||++||++| ++.+|+||++|||||+||.|+|+.+|+.||| ++|++|+||.++
T Consensus        42 ~TV~~lK~~I~~~~~gip~~~QrLi~~Gk~L~D~~tL~dy~I~~~g~ti~lmvsk   96 (98)
T 4a20_A           42 DTILQIKQHLISEEKASHISEIKLLLKGKVLHDNLFLSDLKVTPANSTITVMIKP   96 (98)
T ss_dssp             CBHHHHHHHHHHTTSCSCGGGEEEEETTEEECTTCBGGGSCCBTTBCEEEEEECC
T ss_pred             ChHHHHHHHHHHHhcCCChhhEEEEECCEECcCcCCHHHcCcCCCCCEEEEEEeC
Confidence            4899999999 9999999999999999999999999999999 999999999863

>3m63_B Ubiquitin domain-containing protein DSK2; armadillo-like repeats, UBL conjugation pathway, nucleus, phosphoprotein; HET: 1PE; 2.40A {Saccharomyces cerevisiae}

Probab=99.44  E-value=9.5e-14  Score=105.32  Aligned_cols=52  Identities=21%  Similarity=0.424  Sum_probs=50.2

Q ss_pred             CcHHHHHHHHHHHhCCCCCCceEEecCeecCCcchhhhcCCCCCCEEEEecc
Q 028093            1 MMIGDLKKAISEKTGLDPQEQKVLFRGKEKEDNEHLDVSGMKDKSKVLLLEE   52 (214)
Q Consensus         1 ~Tv~~LK~~l~e~tGipp~~QKLifkGK~L~d~~~L~~~GvkdgSki~Lv~~   52 (214)
                      .||++||.+|++.+|+|+++|||+|+|+.|+|+.+|.+|||++|++|+|+.+
T Consensus        48 ~TV~~LK~~I~~~~gip~~~QrLi~~Gk~L~D~~tL~~~gI~~g~tI~lv~~   99 (101)
T 3m63_B           48 STVLQFKEAINKANGIPVANQRLIYSGKILKDDQTVESYHIQDGHSVHLVKS   99 (101)
T ss_dssp             SBHHHHHHHHHHHHSCCSTTCCEEETTEECCTTSBTTTTTCCTTEEEEECCC
T ss_pred             CCHHHHHHHHHHHHCcChHHEEEEECCEECCCcCcHHHCCCCCCCEEEEEeC
Confidence            4899999999999999999999999999999999999999999999999975

>2kan_A Uncharacterized protein AR3433A; ubiquitin fold, alpha+beta, structural genomics, protein structure initiative; NMR {Arabidopsis thaliana}

Probab=99.44  E-value=1.1e-13  Score=103.57  Aligned_cols=53  Identities=17%  Similarity=0.296  Sum_probs=50.6

Q ss_pred             CcHHHHHHHHHHHhCCCCCCceEEecCeecCCc-chhhhcCCCCCCEEEEeccc
Q 028093            1 MMIGDLKKAISEKTGLDPQEQKVLFRGKEKEDN-EHLDVSGMKDKSKVLLLEEL   53 (214)
Q Consensus         1 ~Tv~~LK~~l~e~tGipp~~QKLifkGK~L~d~-~~L~~~GvkdgSki~Lv~~p   53 (214)
                      .||++||.+|++.+|+||++|||+|+||.|+|+ .+|..|||++|++|+|+...
T Consensus        35 ~TV~~LK~~I~~~~gip~~~QrLi~~Gk~L~D~~~tL~~ygI~~gstl~lv~r~   88 (94)
T 2kan_A           35 ETVSSLKDKIHIVENTPIKRMQLYYSGIELADDYRNLNEYGITEFSEIVVFLKS   88 (94)
T ss_dssp             CBHHHHHHHHHHHSSSCTTTEEEEETTEEECCTTSBHHHHTCCTTEEEEEEECC
T ss_pred             CcHHHHHHHHHHHHCcCHHHEEEEECCEECCCCcccHHHCCCCCCCEEEEEEeC
Confidence            489999999999999999999999999999988 99999999999999999864

>2hj8_A Interferon-induced 17 kDa protein; HR2873B, human ISG15, structure, northeast structural genomics consortium, protein structure initiative, NESG; NMR {Homo sapiens}

Probab=99.44  E-value=8.6e-14  Score=102.19  Aligned_cols=53  Identities=28%  Similarity=0.336  Sum_probs=50.4

Q ss_pred             CcHHHHHHHHHHHhCCCCCCceEEecCeecCCcchhhhcCCCCCCEEEEeccc
Q 028093            1 MMIGDLKKAISEKTGLDPQEQKVLFRGKEKEDNEHLDVSGMKDKSKVLLLEEL   53 (214)
Q Consensus         1 ~Tv~~LK~~l~e~tGipp~~QKLifkGK~L~d~~~L~~~GvkdgSki~Lv~~p   53 (214)
                      .||++||.+|++.+|+||++|||+|+|+.|+|+.+|.+|||++|++|+|+..+
T Consensus        25 ~TV~~LK~~I~~~~gip~~~qrL~~~Gk~L~D~~tL~~~~I~~g~~i~l~~~~   77 (88)
T 2hj8_A           25 QTVAHLKQQVSGLEGVQDDLFWLTFEGKPLEDQLPLGEYGLKPLSTVFMNLRL   77 (88)
T ss_dssp             SBHHHHHHHHHHHTCSCTTTEEEESSSSCCCTTSBHHHHHCSTTCEEEEEEC-
T ss_pred             CcHHHHHHHHHHHhCCChhHEEEEECCEECCCCCcHHHcCCCCCCEEEEEEEc
Confidence            48999999999999999999999999999999999999999999999999864

>3a9j_A Ubiquitin; protein complex, cytoplasm, isopeptide bond, metal-binding, zinc; 1.18A {Mus musculus} PDB: 3a1q_B 2znv_B 3a9k_A 3h7p_A 3jsv_A 3dvg_Y 3dvn_Y 3nob_A 2o6v_D* 3jw0_X 3jvz_X 3nhe_B* 1aar_A 1d3z_A 1f9j_A 1fxt_B 1g6j_A 1nbf_C 1cmx_B 1q5w_B ...

Probab=99.44  E-value=1.7e-13  Score=95.78  Aligned_cols=52  Identities=29%  Similarity=0.514  Sum_probs=50.0

Q ss_pred             CcHHHHHHHHHHHhCCCCCCceEEecCeecCCcchhhhcCCCCCCEEEEecc
Q 028093            1 MMIGDLKKAISEKTGLDPQEQKVLFRGKEKEDNEHLDVSGMKDKSKVLLLEE   52 (214)
Q Consensus         1 ~Tv~~LK~~l~e~tGipp~~QKLifkGK~L~d~~~L~~~GvkdgSki~Lv~~   52 (214)
                      .||++||.+|++.+|+|++.|||+|+|+.|+|+.+|++|||++|++|+|+..
T Consensus        21 ~tv~~lK~~i~~~~~i~~~~q~L~~~g~~L~d~~tL~~~~i~~g~~i~l~~~   72 (76)
T 3a9j_A           21 DTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQRESTLHLVLR   72 (76)
T ss_dssp             CBHHHHHHHHHHHHCCCGGGEEEEETTEECCTTCBTGGGTCCTTCEEEEEEC
T ss_pred             CcHHHHHHHHHHHHCcCHHHeEEEECCeECCCCCcHHHcCCCCCCEEEEEEe
Confidence            4899999999999999999999999999999999999999999999999875

>1uel_A HHR23B, UV excision repair protein RAD23 homolog B; UBL, UIM, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.1

Probab=99.43  E-value=2.3e-13  Score=101.37  Aligned_cols=53  Identities=21%  Similarity=0.318  Sum_probs=50.4

Q ss_pred             CcHHHHHHHHHHH---hCCCCCCceEEecCeecCCcchhhhcCCCCCCEEEEeccc
Q 028093            1 MMIGDLKKAISEK---TGLDPQEQKVLFRGKEKEDNEHLDVSGMKDKSKVLLLEEL   53 (214)
Q Consensus         1 ~Tv~~LK~~l~e~---tGipp~~QKLifkGK~L~d~~~L~~~GvkdgSki~Lv~~p   53 (214)
                      .||++||.+|++.   +|+|+++|||+|+||.|+|+.+|.+|||++|++|+|+..+
T Consensus        21 ~TV~~LK~~I~~~~~~~gip~~~qrLi~~Gk~L~D~~tL~~ygI~~g~~i~l~~~~   76 (95)
T 1uel_A           21 ETVKALKEKIESEKGKDAFPVAGQKLIYAGKILNDDTALKEYKIDEKNFVVVMVTK   76 (95)
T ss_dssp             SBHHHHHHHHHHHHCTTTCCTTTEEEEETTEECCTTSBGGGGTCCSSSEEEEEESS
T ss_pred             CHHHHHHHHHHhhcccCCCChhhEEEEECCEECCCcCcHHHCCCCCCCEEEEEEeC
Confidence            4899999999999   8999999999999999999999999999999999999863

>2klc_A Ubiquilin-1; ubiquitin-like, structural genomics, PSI-2, protein structur initiative, northeast structural genomics consortium, NESG; NMR {Homo sapiens}

Probab=99.43  E-value=1.6e-13  Score=103.90  Aligned_cols=55  Identities=24%  Similarity=0.356  Sum_probs=51.7

Q ss_pred             CcHHHHHHHHHHHhCCCCCCceEEecCeecCCcchhhhcCCCCCCEEEEeccccc
Q 028093            1 MMIGDLKKAISEKTGLDPQEQKVLFRGKEKEDNEHLDVSGMKDKSKVLLLEELTN   55 (214)
Q Consensus         1 ~Tv~~LK~~l~e~tGipp~~QKLifkGK~L~d~~~L~~~GvkdgSki~Lv~~p~s   55 (214)
                      .||++||.+|++.+|+|++.|||+|+|+.|+|+.+|.+|||++|++|+|+..+.+
T Consensus        45 ~TV~~LK~~I~~~~gip~~~qrLi~~Gk~L~D~~tL~~~gI~~g~~I~l~~~~~~   99 (101)
T 2klc_A           45 SSVQQFKEEISKRFKSHTDQLVLIFAGKILKDQDTLSQHGIHDGLTVHLVIKTQN   99 (101)
T ss_dssp             CCHHHHHHHHHHHHTCCGGGEEEEETTEEECTTCCTGGGTCCTTCEEEEEECCSS
T ss_pred             CCHHHHHHHHHHHHCcChhhEEEEECCEECCCcCcHHHcCCCCCCEEEEEEcCCC
Confidence            4899999999999999999999999999999999999999999999999986543

>4dwf_A HLA-B-associated transcript 3; ubiquitin-like domain, BAT3 protein, PF00240, structural GEN joint center for structural genomics, JCSG; 1.80A {Homo sapiens} PDB: 1wx9_A

Probab=99.43  E-value=1.4e-13  Score=100.61  Aligned_cols=53  Identities=17%  Similarity=0.417  Sum_probs=50.3

Q ss_pred             CcHHHHHHHHHHHhCCCCCCceEEecCeecCCcchhhhcCCCCCCEEEEecccc
Q 028093            1 MMIGDLKKAISEKTGLDPQEQKVLFRGKEKEDNEHLDVSGMKDKSKVLLLEELT   54 (214)
Q Consensus         1 ~Tv~~LK~~l~e~tGipp~~QKLifkGK~L~d~~~L~~~GvkdgSki~Lv~~p~   54 (214)
                      .||.+||.+|++.+|+|+++|||||+|+.|+|+.+|..||| +|++|||+..+.
T Consensus        26 ~tV~~lK~~i~~~~gip~~~qrLi~~Gk~L~d~~tL~~~~i-~g~~i~l~~~~~   78 (90)
T 4dwf_A           26 MNVKEFKEHIAASVSIPSEKQRLIYQGRVLQDDKKLQEYNV-GGKVIHLVERAP   78 (90)
T ss_dssp             CBHHHHHHHHHHHHTCCGGGEEEEETTEECCTTSBGGGGTC-TTEEEEEEECCC
T ss_pred             CCHHHHHHHHHHHhCCCHHHEEEEECCeECCCCCCHHHcCC-CCcEEEEEecCC
Confidence            48999999999999999999999999999999999999999 999999998743

>1wgd_A Homocysteine-responsive endoplasmic reticulum- resident ubiquitin-like domain member...; ENDPLASMIC reticulum stress, UBL domain; NMR {Homo sapiens} SCOP: d.15.1.1

Probab=99.43  E-value=1.4e-13  Score=101.77  Aligned_cols=53  Identities=21%  Similarity=0.327  Sum_probs=50.4

Q ss_pred             CcHHHHHHHHHHHh--CCCCCCceEEecCeecCCcchhhhc--CCCCCCEEEEeccc
Q 028093            1 MMIGDLKKAISEKT--GLDPQEQKVLFRGKEKEDNEHLDVS--GMKDKSKVLLLEEL   53 (214)
Q Consensus         1 ~Tv~~LK~~l~e~t--Gipp~~QKLifkGK~L~d~~~L~~~--GvkdgSki~Lv~~p   53 (214)
                      .||++||++|++.+  |+|+++|||||+||.|+|+.+|.+|  ||++|++|||+...
T Consensus        30 ~TV~~lK~~I~~~~~~~i~~~~QrLi~~Gk~L~D~~tL~~~~~~i~~~~~i~lv~~~   86 (93)
T 1wgd_A           30 WSVGHLKAHLSRVYPERPRPEDQRLIYSGKLLLDHQCLRDLLPKQEKRHVLHLVCNV   86 (93)
T ss_dssp             SCHHHHHHHHHHHSTTCCCTTTCEEEETTEECCSSSCHHHHSCSSSCSEEEEEECCC
T ss_pred             CcHHHHHHHHHHHhcCCCChHHeEEEECCEECcCcCCHHHHhcCCCCCCEEEEEeCC
Confidence            48999999999999  9999999999999999999999999  99999999999753

>3n3k_B Ubiquitin; hydrolase, protease, thiol protease, DUB, zinc ribbon, inhibitor, ubiqu acetylation, cytoplasm, isopeptide bond, nucleus; 2.60A {Homo sapiens} SCOP: d.15.1.1

Probab=99.43  E-value=1.6e-13  Score=98.42  Aligned_cols=52  Identities=31%  Similarity=0.549  Sum_probs=50.1

Q ss_pred             CcHHHHHHHHHHHhCCCCCCceEEecCeecCCcchhhhcCCCCCCEEEEecc
Q 028093            1 MMIGDLKKAISEKTGLDPQEQKVLFRGKEKEDNEHLDVSGMKDKSKVLLLEE   52 (214)
Q Consensus         1 ~Tv~~LK~~l~e~tGipp~~QKLifkGK~L~d~~~L~~~GvkdgSki~Lv~~   52 (214)
                      .||.+||.+|++.+|+||++|||+|+|+.|+|+.+|.+|||+++++|+|+..
T Consensus        24 ~tV~~lK~~i~~~~~ip~~~qrL~~~g~~L~d~~tL~~~~i~~~~~i~l~~r   75 (85)
T 3n3k_B           24 DTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIHNHSALYLLLK   75 (85)
T ss_dssp             CBHHHHHHHHHHHHCCCGGGEEEEETBEECCTTCBTTTTTCCTTCEEEEEEC
T ss_pred             CcHHHHHHHHHHHHCCCHHHEEEEECCeECCCCCCHHHCCCCCCCEEEEEEe
Confidence            5899999999999999999999999999999999999999999999999874

>1wy8_A NP95-like ring finger protein, isoform A; ubiquitin-like domain, NP95/ICBP90-like ring finger (NIRF), ubiquitin ligase, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.15.1.1

Probab=99.42  E-value=2.4e-13  Score=99.02  Aligned_cols=53  Identities=21%  Similarity=0.273  Sum_probs=50.5

Q ss_pred             CcHHHHHHHHHHHhCCCCCCceEEecCeecCCcchhhhcCCCCCCEEEEeccc
Q 028093            1 MMIGDLKKAISEKTGLDPQEQKVLFRGKEKEDNEHLDVSGMKDKSKVLLLEEL   53 (214)
Q Consensus         1 ~Tv~~LK~~l~e~tGipp~~QKLifkGK~L~d~~~L~~~GvkdgSki~Lv~~p   53 (214)
                      .||.+||.+|++.+|+|+++|||+|+|+.|+|+.+|.+|||++|++|||+...
T Consensus        30 ~tV~~lK~~i~~~~gip~~~qrL~~~gk~L~d~~tL~~~~i~~g~~i~l~~~~   82 (89)
T 1wy8_A           30 ATIEELRERVWALFDVRPECQRLFYRGKQLENGYTLFDYDVGLNDIIQLLVRP   82 (89)
T ss_dssp             CBHHHHHHHHHHHSCCCTTTEEEEETTEECCSSSBHHHHTCCTTCEEEEEECC
T ss_pred             CCHHHHHHHHHHHHCcChhhEEEEECCeECCCCCCHHHCCCCCCCEEEEEEeC
Confidence            48999999999999999999999999999999999999999999999999753

>3mtn_B UBA80, ubcep1, ubiquitin variant UBV.21.4; ubiquitin-specific protease activity, hydrolase, ubiquitin B structural genomics consortium, SGC; 2.70A {Homo sapiens} SCOP: d.15.1.1

Probab=99.42  E-value=2.3e-13  Score=97.39  Aligned_cols=52  Identities=31%  Similarity=0.528  Sum_probs=50.1

Q ss_pred             CcHHHHHHHHHHHhCCCCCCceEEecCeecCCcchhhhcCCCCCCEEEEecc
Q 028093            1 MMIGDLKKAISEKTGLDPQEQKVLFRGKEKEDNEHLDVSGMKDKSKVLLLEE   52 (214)
Q Consensus         1 ~Tv~~LK~~l~e~tGipp~~QKLifkGK~L~d~~~L~~~GvkdgSki~Lv~~   52 (214)
                      .||.+||.+|++.+|+|+++|||+|+|+.|+|+.+|.+|||+++++|+|+..
T Consensus        24 ~tV~~lK~~i~~~~~i~~~~qrL~~~g~~L~d~~tL~~~~i~~~~~l~l~~r   75 (85)
T 3mtn_B           24 DTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKWSTLFLLLR   75 (85)
T ss_dssp             CBHHHHHHHHHHHHCCCGGGCEEEETTEECCTTSBTGGGTCCTTCEEEEECC
T ss_pred             CCHHHHHHHHHHHHCcChHHEEEEECCEECCCCCCHHHcCCCCCCEEEEEEE
Confidence            4899999999999999999999999999999999999999999999999974

>1wh3_A 59 kDa 2'-5'-oligoadenylate synthetase like protein; P59 OASL, ubiquitin family, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.1

Probab=99.42  E-value=2.3e-13  Score=98.51  Aligned_cols=53  Identities=26%  Similarity=0.453  Sum_probs=50.5

Q ss_pred             CcHHHHHHHHHHHhCCCCCCceEEecCeecCCcchhhhcCCCCCCEEEEeccc
Q 028093            1 MMIGDLKKAISEKTGLDPQEQKVLFRGKEKEDNEHLDVSGMKDKSKVLLLEEL   53 (214)
Q Consensus         1 ~Tv~~LK~~l~e~tGipp~~QKLifkGK~L~d~~~L~~~GvkdgSki~Lv~~p   53 (214)
                      .||.+||++|++.+|+|+++|||+|+|+.|+|+.+|.+|||++|++|||+...
T Consensus        28 ~tV~~lK~~i~~~~gi~~~~qrL~~~Gk~L~d~~tL~~~~i~~g~~i~l~~~~   80 (87)
T 1wh3_A           28 SFILGLKQQIEDQQGLPKKQQQLEFQGQVLQDWLGLGIYGIQDSDTLILSKKK   80 (87)
T ss_dssp             SBHHHHHHHHHHHTCCCTTTEEEEETTEECCSSSBHHHHTCCTTEEEEEEECS
T ss_pred             ChHHHHHHHHHHHhCCChHHEEEEECCEEccCCCCHHHCCCCCCCEEEEEEec
Confidence            48999999999999999999999999999999999999999999999999753

>1sif_A Ubiquitin; hydrophobic mutants, folding, stability, structural protein; 2.18A {Homo sapiens} SCOP: d.15.1.1

Probab=99.41  E-value=2.3e-13  Score=100.00  Aligned_cols=52  Identities=31%  Similarity=0.533  Sum_probs=49.5

Q ss_pred             CcHHHHHHHHHHHhCCCCCCceEEecCeecCCcchhhhcCCCCCCEEEEecc
Q 028093            1 MMIGDLKKAISEKTGLDPQEQKVLFRGKEKEDNEHLDVSGMKDKSKVLLLEE   52 (214)
Q Consensus         1 ~Tv~~LK~~l~e~tGipp~~QKLifkGK~L~d~~~L~~~GvkdgSki~Lv~~   52 (214)
                      .||++||.+|++.+|+||+.|||+|+|+.|+|+.+|.+|||++|++|+|+..
T Consensus        30 ~TV~~LK~~I~~~~gip~~~qrL~~~Gk~L~D~~tL~~~gi~~g~~i~l~~r   81 (88)
T 1sif_A           30 DTIENLKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLR   81 (88)
T ss_dssp             SBHHHHHHHHHHHHCCCGGGCEEEETTEECCTTSBSGGGTCCTTCEEEEEC-
T ss_pred             ChHHHHHHHHHHHHCcChhhEEEEECCEECCCCCcHHHcCCCCCCEEEEEEe
Confidence            4899999999999999999999999999999999999999999999999875

>1x1m_A Ubiquitin-like protein SB132; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.15.1.1

Probab=99.41  E-value=3e-13  Score=103.14  Aligned_cols=54  Identities=26%  Similarity=0.381  Sum_probs=51.3

Q ss_pred             CcHHHHHHHHHHHh--CCCCCC-ceEEecCeecCCcchhhhcCCCCCCEEEEecccc
Q 028093            1 MMIGDLKKAISEKT--GLDPQE-QKVLFRGKEKEDNEHLDVSGMKDKSKVLLLEELT   54 (214)
Q Consensus         1 ~Tv~~LK~~l~e~t--Gipp~~-QKLifkGK~L~d~~~L~~~GvkdgSki~Lv~~p~   54 (214)
                      .||++||++|++.+  |+|+++ |||||+||.|+|+.+|..|||++|++|||+..+.
T Consensus        45 ~TV~~LK~~i~~~~~~gip~~~~qrLi~~Gk~L~D~~tL~~y~i~~g~~i~lv~~~~  101 (107)
T 1x1m_A           45 YSISFLKQLIAGKLQESVPDPELIDLIYCGRKLKDDQTLDFYGIQPGSTVHVLRKSW  101 (107)
T ss_dssp             CBHHHHHHHHHHHCTTTCCCSSSEEEEETTEECCTTCBHHHHTCCTTCEEEEEESSC
T ss_pred             CCHHHHHHHHHHHhccCCChhhcEEEEECCeECCCCCcHHHcCCCCCCEEEEEeCCC
Confidence            48999999999999  999999 9999999999999999999999999999998654

>4hcn_B Polyubiquitin, ubiquitin; ubiquitin/NEDD8 deamidase, NEDD8, protein binding; 2.60A {Saccharomyces cerevisiae}

Probab=99.41  E-value=2.2e-13  Score=102.00  Aligned_cols=52  Identities=29%  Similarity=0.528  Sum_probs=50.0

Q ss_pred             CcHHHHHHHHHHHhCCCCCCceEEecCeecCCcchhhhcCCCCCCEEEEecc
Q 028093            1 MMIGDLKKAISEKTGLDPQEQKVLFRGKEKEDNEHLDVSGMKDKSKVLLLEE   52 (214)
Q Consensus         1 ~Tv~~LK~~l~e~tGipp~~QKLifkGK~L~d~~~L~~~GvkdgSki~Lv~~   52 (214)
                      .||.+||.+|++.+|+|+++|||+|+|+.|+|+.+|.+|||++|++|+|+..
T Consensus        43 ~TV~~LK~~I~~~~gip~~~qrLi~~Gk~L~D~~tL~~~~i~~g~~i~l~~r   94 (98)
T 4hcn_B           43 DTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLR   94 (98)
T ss_dssp             CBHHHHHHHHHHHHCCCGGGCEEEETTEECCTTCBSGGGTCCTTEEEEEECB
T ss_pred             CcHHHHHHHHHHHhCCChhHEEEEECCEECCCCCcHHHCCCCCCCEEEEEEe
Confidence            4899999999999999999999999999999999999999999999999864

>1wx8_A Riken cDNA 4931431F19; ubiquitin-like domain, ubiquilin 1-like, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1

Probab=99.41  E-value=1.8e-13  Score=101.54  Aligned_cols=53  Identities=25%  Similarity=0.303  Sum_probs=50.7

Q ss_pred             CcHHHHHHHHHHHhCCCCCCceEEecCeecCCcchhhhcCCCCCCEEEEeccc
Q 028093            1 MMIGDLKKAISEKTGLDPQEQKVLFRGKEKEDNEHLDVSGMKDKSKVLLLEEL   53 (214)
Q Consensus         1 ~Tv~~LK~~l~e~tGipp~~QKLifkGK~L~d~~~L~~~GvkdgSki~Lv~~p   53 (214)
                      .||.+||++|++.+|+|+++|||+|+|+.|+|+.+|.+|||++|++|||+...
T Consensus        37 ~TV~~LK~~I~~~~gip~~~qrL~~~Gk~L~D~~tL~~~gi~~g~~i~l~~~~   89 (96)
T 1wx8_A           37 SNVRRFKKQISKYLHCNADRLVLIFTGKILRDQDILSQRGILDGSTVHVVVRS   89 (96)
T ss_dssp             CCHHHHHHHHHHHTCSCTTTBCCEETTEECCTTSCHHHHTCCTTEEEECCBCC
T ss_pred             CCHHHHHHHHHHHhCCCHHHEEEEECCEECCCcCCHHHCCCCCCCEEEEEEeC
Confidence            48999999999999999999999999999999999999999999999999764

>1wx7_A Ubiquilin 3; ubiquitin-like domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: d.15.1.1

Probab=99.40  E-value=5.6e-13  Score=101.06  Aligned_cols=53  Identities=28%  Similarity=0.417  Sum_probs=50.7

Q ss_pred             CcHHHHHHHHHHHhCCCCCCceEEecCeecCCcchhhhcCCCCCCEEEEeccc
Q 028093            1 MMIGDLKKAISEKTGLDPQEQKVLFRGKEKEDNEHLDVSGMKDKSKVLLLEEL   53 (214)
Q Consensus         1 ~Tv~~LK~~l~e~tGipp~~QKLifkGK~L~d~~~L~~~GvkdgSki~Lv~~p   53 (214)
                      .||.+||++|++.+|||+++|||+|+|+.|+|+.+|..|||++|++|||+...
T Consensus        37 ~TV~~LK~~I~~~~gip~~~qrLi~~Gk~L~D~~tL~~~gi~~g~~i~l~~~~   89 (106)
T 1wx7_A           37 CTIQQLKEEISQRFKAHPDQLVLIFAGKILKDPDSLAQCGVRDGLTVHLVIKR   89 (106)
T ss_dssp             CCHHHHHHHHHHHHTCCTTTEEEEETTEECCTTSCHHHHTCCTTEEEEEEECC
T ss_pred             CcHHHHHHHHHHHHCcChhhEEEEECCEECCCcCcHHHcCCCCCCEEEEEEcC
Confidence            48999999999999999999999999999999999999999999999999864

>3k9o_B Ubiquitin, UBB+1; E2-25K, complex structure, ATP-binding, isopeptide BO ligase, nucleotide-binding, UBL conjugation pathway; 1.80A {Homo sapiens} PDB: 2k25_A 2kx0_A

Probab=99.40  E-value=3.1e-13  Score=99.68  Aligned_cols=52  Identities=29%  Similarity=0.519  Sum_probs=50.2

Q ss_pred             CcHHHHHHHHHHHhCCCCCCceEEecCeecCCcchhhhcCCCCCCEEEEecc
Q 028093            1 MMIGDLKKAISEKTGLDPQEQKVLFRGKEKEDNEHLDVSGMKDKSKVLLLEE   52 (214)
Q Consensus         1 ~Tv~~LK~~l~e~tGipp~~QKLifkGK~L~d~~~L~~~GvkdgSki~Lv~~   52 (214)
                      .||.+||.+|++.+|+|++.|||+|+|+.|+|+.+|.+|||++|++|||+..
T Consensus        22 ~TV~~LK~~i~~~~gip~~~qrL~~~G~~L~d~~tL~~~~i~~~~~i~l~~r   73 (96)
T 3k9o_B           22 DTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLR   73 (96)
T ss_dssp             CBHHHHHHHHHHHHCCCGGGEEEEETTEECCTTSBTGGGTCCTTCEEEEEEC
T ss_pred             CCHHHHHHHHHhhhCCChhHEEEEECCEECCCCCcHHHcCCCCCCEEEEEEE
Confidence            4899999999999999999999999999999999999999999999999975

>1yqb_A Ubiquilin 3; structural genomics consortium, ubiquitin, ubiquitin-like domain, structural genomics, signaling protein SGC; 2.00A {Homo sapiens} SCOP: d.15.1.1

Probab=99.40  E-value=3e-13  Score=102.29  Aligned_cols=53  Identities=28%  Similarity=0.417  Sum_probs=50.8

Q ss_pred             CcHHHHHHHHHHHhCCCCCCceEEecCeecCCcchhhhcCCCCCCEEEEeccc
Q 028093            1 MMIGDLKKAISEKTGLDPQEQKVLFRGKEKEDNEHLDVSGMKDKSKVLLLEEL   53 (214)
Q Consensus         1 ~Tv~~LK~~l~e~tGipp~~QKLifkGK~L~d~~~L~~~GvkdgSki~Lv~~p   53 (214)
                      .||++||.+|++.+|+|+++|||+|+||.|+|+.+|.+|||++|++|+|+...
T Consensus        42 ~TV~~LK~~I~~~~gip~~~QrLi~~Gk~L~D~~tL~~ygI~~gstI~l~~r~   94 (100)
T 1yqb_A           42 CTIQQLKEEISQRFKAHPDQLVLIFAGKILKDPDSLAQCGVRDGLTVHLVIKR   94 (100)
T ss_dssp             CBHHHHHHHHHHHHTCCGGGEEEEETTEECCTTSBHHHHTCCTTCEEEEEECC
T ss_pred             CcHHHHHHHHHHHHCcChhhEEEEECCEECCCcCcHHHCCCCCCCEEEEEEcC
Confidence            48999999999999999999999999999999999999999999999999864

>1uh6_A Ubiquitin-like 5; beta-grAsp fold, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: d.15.1.1

Probab=99.40  E-value=2.1e-13  Score=104.64  Aligned_cols=50  Identities=26%  Similarity=0.174  Sum_probs=48.5

Q ss_pred             CcHHHHHHHHHHHhCCCCCCceEEecCeecCCcchhhhcCCCCCCEEEEe
Q 028093            1 MMIGDLKKAISEKTGLDPQEQKVLFRGKEKEDNEHLDVSGMKDKSKVLLL   50 (214)
Q Consensus         1 ~Tv~~LK~~l~e~tGipp~~QKLifkGK~L~d~~~L~~~GvkdgSki~Lv   50 (214)
                      .||++||++|++++|+||++|||||.||.|+|+.+|.+|||++|++|+|+
T Consensus        49 dTV~~lK~~Ia~k~Gip~~qQrLi~~Gk~L~D~~TL~dygI~~gstlhL~   98 (100)
T 1uh6_A           49 DTIGDLKKLIAAQTGTRWNKIVLKKWYTIFKDHVSLGDYEIHDGMNLELY   98 (100)
T ss_dssp             SBHHHHHHHHHHHHCCCGGGCEEEETTEECCSSCBHHHHTCCTTEEEEEE
T ss_pred             CcHHHHHHHHHHHhCCCHHHEEEEECCEECCCCCCHHHcCCCCCCEEEEE
Confidence            48999999999999999999999999999999999999999999999986

>1ttn_A DC-UBP, dendritic cell-derived ubiquitin-like protein; ubiquitin-like domain, solution structure, signaling protein; NMR {Homo sapiens} SCOP: d.15.1.1

Probab=99.40  E-value=3.2e-13  Score=102.73  Aligned_cols=53  Identities=15%  Similarity=0.298  Sum_probs=50.7

Q ss_pred             CcHHHHHHHHHHHhCCCCCCceEEecCeecCCcchhhhcCCCCCCEEEEeccc
Q 028093            1 MMIGDLKKAISEKTGLDPQEQKVLFRGKEKEDNEHLDVSGMKDKSKVLLLEEL   53 (214)
Q Consensus         1 ~Tv~~LK~~l~e~tGipp~~QKLifkGK~L~d~~~L~~~GvkdgSki~Lv~~p   53 (214)
                      .||++||.+|++.+|+|+++|||+|+|+.|+|+.+|..|||++|++|||+...
T Consensus        44 ~TV~~LK~~I~~~~gip~~~qrLi~~Gk~L~D~~tL~~ygI~~g~ti~lv~~~   96 (106)
T 1ttn_A           44 DTVFHMKRRLHAAEGVEPGSQRWFFSGRPLTDKMKFEELKIPKDYVVQVIVSQ   96 (106)
T ss_dssp             SHHHHHHHHHHHTTCCCSTTCEEEETTEECCTTSHHHHCCCSSSCEEEEECCC
T ss_pred             CcHHHHHHHHHHHHCcCcccEEEEECCEECCCCCcHHHcCCCCCCEEEEEEeC
Confidence            48999999999999999999999999999999999999999999999999853

>2l7r_A Ubiquitin-like protein FUBI; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; NMR {Homo sapiens}

Probab=99.39  E-value=3.3e-13  Score=100.39  Aligned_cols=52  Identities=21%  Similarity=0.404  Sum_probs=50.0

Q ss_pred             CcHHHHHHHHHHHhCCCCCCceEEecCeecCCcchhhhcCCCCCCEEEEecc
Q 028093            1 MMIGDLKKAISEKTGLDPQEQKVLFRGKEKEDNEHLDVSGMKDKSKVLLLEE   52 (214)
Q Consensus         1 ~Tv~~LK~~l~e~tGipp~~QKLifkGK~L~d~~~L~~~GvkdgSki~Lv~~   52 (214)
                      .||.+||.+|++.+|+||++|||+|+|+.|+|+.+|.+|||++|++|+|+..
T Consensus        38 ~TV~~LK~~I~~~~gip~~~qrLi~~Gk~L~D~~tL~~y~I~~gstI~lv~r   89 (93)
T 2l7r_A           38 ETVAQIKAHVASLEGIAPEDQVVLLAGAPLEDEATLGQCGVEALTTLEVAGR   89 (93)
T ss_dssp             CBHHHHHHHHHHHHTCCGGGCEEEETTEECCTTSBHHHHTCCSSCEEEEECC
T ss_pred             CcHHHHHHHHHHHhCcChhHEEEEECCEECCCCCcHHHCCCCCCCEEEEEEe
Confidence            4899999999999999999999999999999999999999999999999864

>2daf_A FLJ35834 protein; hypothetical protein FLJ35834, ubiquitin-like domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.39  E-value=3.5e-13  Score=106.38  Aligned_cols=55  Identities=25%  Similarity=0.263  Sum_probs=51.8

Q ss_pred             CcHHHHHHHHHHHhCCCCCCceEEecCeecCCcchhhhcCCCCCCEEEEeccccc
Q 028093            1 MMIGDLKKAISEKTGLDPQEQKVLFRGKEKEDNEHLDVSGMKDKSKVLLLEELTN   55 (214)
Q Consensus         1 ~Tv~~LK~~l~e~tGipp~~QKLifkGK~L~d~~~L~~~GvkdgSki~Lv~~p~s   55 (214)
                      +||++||+.|++..|+|++.|+|||+||.|+|+++|..|||++|.+|||+.....
T Consensus        37 ~TV~dLKe~ls~~~~iP~e~qrLIy~GKiLKD~eTL~~~gIk~g~TIhLvi~s~~   91 (118)
T 2daf_A           37 TILKYLKDHFSHLLGIPHSVLQIRYSGKILKNNETLVQHGVKPQEIVQVEIFSTN   91 (118)
T ss_dssp             SCSHHHHHHHHHHHTCCTTTEEEEETTEEECSSCCHHHHSCCSSCEEEEEEEESC
T ss_pred             CcHHHHHHHHHhhhCCChHHEEEEECCeEcCCcchHHHcCCCCCCEEEEEEecCC
Confidence            4899999999999999999999999999999999999999999999999986443

>2uyz_B Small ubiquitin-related modifier 1; sumoylation, cell division, nuclear protein, ubiquitin-like modifier, UBL conjugation pathway; 1.4A {Homo sapiens} SCOP: d.15.1.1 PDB: 2vrr_B 2iy0_B 2iy1_B 2g4d_B 2las_A 2io2_B 1z5s_B 3uip_B* 1tgz_B* 2bf8_B

Probab=99.38  E-value=3.2e-13  Score=96.30  Aligned_cols=52  Identities=21%  Similarity=0.410  Sum_probs=49.8

Q ss_pred             CcHHHHHHHHHHHhCCCCCCceEEecCeecCCcchhhhcCCCCCCEEEEecc
Q 028093            1 MMIGDLKKAISEKTGLDPQEQKVLFRGKEKEDNEHLDVSGMKDKSKVLLLEE   52 (214)
Q Consensus         1 ~Tv~~LK~~l~e~tGipp~~QKLifkGK~L~d~~~L~~~GvkdgSki~Lv~~   52 (214)
                      .||++||+++++.+|+|+++|||+|.|+.|+|+.+|.+|||++|++|+|+..
T Consensus        24 ~tv~~lk~~i~~~~gi~~~~qrL~~~G~~L~d~~tl~~~~i~~~~~i~l~~~   75 (79)
T 2uyz_B           24 THLKKLKESYCQRQGVPMNSLRFLFEGQRIADNHTPKELGMEEEDVIEVYQE   75 (79)
T ss_dssp             SCTHHHHHHHHHHHTCCGGGEEEEETTEECCTTCCHHHHTCCTTEEEEEEEC
T ss_pred             ChHHHHHHHHHHHHCCCcccEEEEECCEEeCCCCCHHHcCCCCCCEEEEEEe
Confidence            4899999999999999999999999999999999999999999999999864

>1v5o_A 1700011N24RIK protein; hypothetical protein, ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1

Probab=99.38  E-value=3.7e-13  Score=101.72  Aligned_cols=53  Identities=19%  Similarity=0.358  Sum_probs=49.7

Q ss_pred             CcHHHHHHHHHHHhCCCCCCceEEecCeecCCc-chhhhcCCCCCCEEEEeccc
Q 028093            1 MMIGDLKKAISEKTGLDPQEQKVLFRGKEKEDN-EHLDVSGMKDKSKVLLLEEL   53 (214)
Q Consensus         1 ~Tv~~LK~~l~e~tGipp~~QKLifkGK~L~d~-~~L~~~GvkdgSki~Lv~~p   53 (214)
                      +||++||.+|++.+|||+++|||+|+|+.|+|+ .+|..|||++|++|||+...
T Consensus        32 ~TV~~LK~~I~~~~gip~~~qrL~~~gk~L~D~~~tL~~ygI~~g~~l~l~~~~   85 (102)
T 1v5o_A           32 FELSNFRVLCELESGVPAEEAQIVYMEQLLTDDHCSLGSYGLKDGDMVVLLQKD   85 (102)
T ss_dssp             CBHHHHHHHHHHHTCCCGGGBCEEETTEEECCSSSBHHHHTCCTTEEEEECBCC
T ss_pred             CCHHHHHHHHHHHHCcChHHeEEEECCEECCCCcccHHHCCCCCCCEEEEEECC
Confidence            589999999999999999999999999999776 69999999999999999864

>1yx5_B Ubiquitin; proteasome, UIM, hydrolase; NMR {Homo sapiens} SCOP: d.15.1.1 PDB: 1yx6_B

Probab=99.37  E-value=7.1e-13  Score=98.72  Aligned_cols=53  Identities=30%  Similarity=0.535  Sum_probs=50.6

Q ss_pred             CcHHHHHHHHHHHhCCCCCCceEEecCeecCCcchhhhcCCCCCCEEEEeccc
Q 028093            1 MMIGDLKKAISEKTGLDPQEQKVLFRGKEKEDNEHLDVSGMKDKSKVLLLEEL   53 (214)
Q Consensus         1 ~Tv~~LK~~l~e~tGipp~~QKLifkGK~L~d~~~L~~~GvkdgSki~Lv~~p   53 (214)
                      .||++||.+|++.+|+|++.|||+|+|+.|+|+.+|.+|||++|++|+|+...
T Consensus        21 ~TV~~LK~~I~~~~gi~~~~qrL~~~Gk~L~D~~tL~~~gi~~g~~i~l~~~~   73 (98)
T 1yx5_B           21 DTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRL   73 (98)
T ss_dssp             CBHHHHHHHHHHHTCCCGGGEEEEETTEECCTTSBTGGGTCCTTCEEEEEECC
T ss_pred             CcHHHHHHHHHHHHCcChhhEEEEECCEECCCCCCHHHcCCCCCCEEEEEEeC
Confidence            48999999999999999999999999999999999999999999999999763

>1we6_A Splicing factor, putative; structural genomics, ubiquitin-like domain, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: d.15.1.1

Probab=99.35  E-value=8.2e-13  Score=101.06  Aligned_cols=52  Identities=19%  Similarity=0.153  Sum_probs=50.2

Q ss_pred             CcHHHHHHHHHHHhCCCCCCceEEecCeecCCcchhhhcCCCCCCEEEEecc
Q 028093            1 MMIGDLKKAISEKTGLDPQEQKVLFRGKEKEDNEHLDVSGMKDKSKVLLLEE   52 (214)
Q Consensus         1 ~Tv~~LK~~l~e~tGipp~~QKLifkGK~L~d~~~L~~~GvkdgSki~Lv~~   52 (214)
                      .||++||.+|++.+|||+++|||+|+|+.|+|+.+|..|||++|++|||+..
T Consensus        52 ~TV~~LK~~I~~~~gip~~~QrL~~~Gk~L~D~~tL~~y~I~~g~~l~l~~r  103 (111)
T 1we6_A           52 ENVGSLKEKIAGEIQIPANKQKLSGKAGFLKDNMSLAHYNVGAGEILTLSLR  103 (111)
T ss_dssp             SBHHHHHHHHHHHTTCCTTTSEEECSSSBCCTTSBTTTTTCSSSCEEEEECS
T ss_pred             CcHHHHHHHHHHHHCCCHHHeEEEECCEECCCCCcHHHCCCCCCCEEEEEEE
Confidence            4899999999999999999999999999999999999999999999999975

>3b1l_X E3 ubiquitin-protein ligase parkin; proteasome, ALFA-beta-protein; 1.85A {Mus musculus} PDB: 1mg8_A 2zeq_A 2knb_A 1iyf_A

Probab=99.04  E-value=6.6e-14  Score=98.84  Aligned_cols=52  Identities=21%  Similarity=0.416  Sum_probs=49.8

Q ss_pred             CcHHHHHHHHHHHhCCCCCCceEEecCeecCCcchhhhcCCCCCCEEEEecc
Q 028093            1 MMIGDLKKAISEKTGLDPQEQKVLFRGKEKEDNEHLDVSGMKDKSKVLLLEE   52 (214)
Q Consensus         1 ~Tv~~LK~~l~e~tGipp~~QKLifkGK~L~d~~~L~~~GvkdgSki~Lv~~   52 (214)
                      .||++||.+|++.+|+|++.|||+|+|+.|+|+.+|++|||++|++|||+..
T Consensus        21 ~tV~~lK~~i~~~~gi~~~~qrL~~~gk~L~d~~tL~~~~i~~g~~i~l~~r   72 (76)
T 3b1l_X           21 TSILQLKEVVAKQQGVPADQLRVIFAGKELPNHLTVQNCDLEQQSIVHIVQR   72 (76)
Confidence            4899999999999999999999999999999999999999999999999874

>1j8c_A Ubiquitin-like protein hplic-2; ubiquitin-like domain, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.1

Probab=99.35  E-value=8.8e-13  Score=103.81  Aligned_cols=53  Identities=25%  Similarity=0.331  Sum_probs=50.4

Q ss_pred             CcHHHHHHHHHHHhCCCCCCceEEecCeecCCcchhhhcCCCCCCEEEEeccc
Q 028093            1 MMIGDLKKAISEKTGLDPQEQKVLFRGKEKEDNEHLDVSGMKDKSKVLLLEEL   53 (214)
Q Consensus         1 ~Tv~~LK~~l~e~tGipp~~QKLifkGK~L~d~~~L~~~GvkdgSki~Lv~~p   53 (214)
                      .||.+||.+|++.+|||+++|||||+||.|+|+.+|..|||++|++|+|+...
T Consensus        52 ~TV~~LK~~I~~~~gip~~~QrLi~~Gk~L~D~~tL~dygI~~gstI~lv~~~  104 (125)
T 1j8c_A           52 SSVQQFKEAISKRFKSQTDQLVLIFAGKILKDQDTLIQHGIHDGLTVHLVIKR  104 (125)
T ss_dssp             CCHHHHHHHHHHHHCSCSSSEEEEETTEEESTTSCGGGTTCSSSEEEEEEEC-
T ss_pred             CcHHHHHHHHHHHHCcCcceEEEEECCEEcCCCCCHHHcCCCCCCEEEEEecc
Confidence            48999999999999999999999999999999999999999999999999863

>4ajy_B Transcription elongation factor B polypeptide 2; E3 ubiquitin ligase, transcription factor, hypoxic signaling transcription; 1.73A {Homo sapiens} PDB: 1lqb_A 1vcb_A 2c9w_B 2izv_B 2jz3_B 2xai_C 3dcg_A 3zrc_A* 3zrf_A 3ztc_A* 3ztd_A* 3zun_A* 1lm8_B 4b95_A* 2fnj_B 4b9k_A* 4awj_A*

Probab=99.35  E-value=6.8e-13  Score=104.74  Aligned_cols=52  Identities=19%  Similarity=0.219  Sum_probs=50.0

Q ss_pred             CcHHHHHHHHHHHhCCCCCCceEEecCeecCCcchhhhcCCCC-------CCEEEEecc
Q 028093            1 MMIGDLKKAISEKTGLDPQEQKVLFRGKEKEDNEHLDVSGMKD-------KSKVLLLEE   52 (214)
Q Consensus         1 ~Tv~~LK~~l~e~tGipp~~QKLifkGK~L~d~~~L~~~Gvkd-------gSki~Lv~~   52 (214)
                      .||.+||++|++++||||++|||||.||.|+|+.+|++|||++       +++|||+-.
T Consensus        22 dTV~~lK~kI~~~~giPp~qQrLI~~Gk~LeD~kTL~dy~I~~~ta~~q~~atl~Lvlr   80 (118)
T 4ajy_B           22 STVFELKRIVEGILKRPPDEQRLYKDDQLLDDGKTLGECGFTSQTARPQAPATVGLAFR   80 (118)
T ss_dssp             SBHHHHHHHHHHHHCCCGGGEEEEETTEECCTTSBTTTTTCCGGGSBTTBCEEEEEEEC
T ss_pred             ChHHHHHHHHHHHHCCCHHHeEEEeCCeECCCcCCHHHcCCCcCcccCCCCCEEEEEEe
Confidence            4899999999999999999999999999999999999999999       999999854

>2kjr_A CG11242; UBL, ubiquitin, ubiquitin-like, structural genomics, PSI-2, protein structure initiative; NMR {Drosophila melanogaster}

Probab=99.34  E-value=1.2e-12  Score=98.91  Aligned_cols=51  Identities=16%  Similarity=0.188  Sum_probs=47.5

Q ss_pred             CcHHHHHHHHHHHhCCCCCCceEEec--Ce---ec-CCcchhhhcCCCCCCEEEEec
Q 028093            1 MMIGDLKKAISEKTGLDPQEQKVLFR--GK---EK-EDNEHLDVSGMKDKSKVLLLE   51 (214)
Q Consensus         1 ~Tv~~LK~~l~e~tGipp~~QKLifk--GK---~L-~d~~~L~~~GvkdgSki~Lv~   51 (214)
                      .||++||++|++.+||||++|||+|+  |+   .| +|+.+|..|||++|++|+|+.
T Consensus        38 ~TV~~LK~kI~~~~GiP~~~QrL~~~~~g~~~~~L~~D~~tL~~Y~i~~gstihlvD   94 (95)
T 2kjr_A           38 LTVAQLKTKLEILTGGCAGTMKVQVFKGDTCVSTMDNNDAQLGYYANSDGLRLHVVD   94 (95)
T ss_dssp             CBHHHHHHHHHHHHCSCTTTEEEEEEETTEEEEECCCTTSBHHHHCCSSSCEEEEEE
T ss_pred             CHHHHHHHHHHHHHCcCHHHeEEEEecCCcccceeCCCCCCHhHCCcCCCCEEEEEC
Confidence            58999999999999999999999998  45   55 899999999999999999986

>2kj6_A Tubulin folding cofactor B; methods development, NESG, solution PSI-2, structural genomics, protein structure initiative; NMR {Arabidopsis thaliana}

Probab=99.34  E-value=1e-12  Score=99.77  Aligned_cols=52  Identities=13%  Similarity=0.188  Sum_probs=48.1

Q ss_pred             CcHHHHHHHHHHHhCCCCCCceEEecCe---e---c-CCcchhhhcCCCCCCEEEEecc
Q 028093            1 MMIGDLKKAISEKTGLDPQEQKVLFRGK---E---K-EDNEHLDVSGMKDKSKVLLLEE   52 (214)
Q Consensus         1 ~Tv~~LK~~l~e~tGipp~~QKLifkGK---~---L-~d~~~L~~~GvkdgSki~Lv~~   52 (214)
                      +||++||.+|+..+||||++|||+|.|+   .   | +|+.+|..|||++|++|||+..
T Consensus        37 ~TV~~LK~kIe~~~Gip~~~QrLi~~g~~g~~~~~L~~D~~tL~~Y~I~~g~~Ihlvd~   95 (97)
T 2kj6_A           37 MSVEAVKEKLWKKCGTSVNSMALELYDDSGSKVAVLSDDSRPLGFFSPFDGFRLHIIDL   95 (97)
T ss_dssp             CCHHHHHHHHHHHHCCCTTSEEEEEECSSSCBCCCSSGGGSCHHHHCCCSCCEEEEEEC
T ss_pred             ChHHHHHHHHHHHHCcCHHHeEEEEecCCCcccceecCCcCCHHHCCCCCCCEEEEEeC
Confidence            5899999999999999999999999984   3   4 8999999999999999999974

>3vdz_A Ubiquitin-40S ribosomal protein S27A; gadolinium, MRI contrast agent, peptide-based contrast agent lanthanide binding TAG; 2.40A {Synthetic construct} PDB: 2ojr_A

Probab=99.34  E-value=1e-12  Score=100.87  Aligned_cols=52  Identities=29%  Similarity=0.519  Sum_probs=49.9

Q ss_pred             CcHHHHHHHHHHHhCCCCCCceEEecCeecCCcchhhhcCCCCCCEEEEecc
Q 028093            1 MMIGDLKKAISEKTGLDPQEQKVLFRGKEKEDNEHLDVSGMKDKSKVLLLEE   52 (214)
Q Consensus         1 ~Tv~~LK~~l~e~tGipp~~QKLifkGK~L~d~~~L~~~GvkdgSki~Lv~~   52 (214)
                      .||.+||.+|++.+|+||++|||+|+|+.|+|+.+|..|||++|++|||+..
T Consensus        56 ~TV~~LK~~I~~~~gip~~~QrLi~~Gk~L~D~~tL~~~gI~~gs~I~l~~r  107 (111)
T 3vdz_A           56 DTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLR  107 (111)
T ss_dssp             CBHHHHHHHHHHHHCCCGGGEEEEETTEECCTTSBTTTTTCCTTCEEEEEEC
T ss_pred             CCHHHHHHHHHHHhCCChHHEEEEECCEECCCCCcHHHCCCCCCCEEEEEEe
Confidence            4899999999999999999999999999999999999999999999999864

>2kdb_A Homocysteine-responsive endoplasmic reticulum- resident ubiquitin-like domain member...; UBL domain, membrane, polymorphism, transmembrane; NMR {Homo sapiens}

Probab=99.34  E-value=7.8e-13  Score=100.66  Aligned_cols=50  Identities=20%  Similarity=0.305  Sum_probs=46.5

Q ss_pred             CcHHHHHHHHHHH-hCCCC-CCceEEecCeecCCcchhhhc--CCCCCCEEEEe
Q 028093            1 MMIGDLKKAISEK-TGLDP-QEQKVLFRGKEKEDNEHLDVS--GMKDKSKVLLL   50 (214)
Q Consensus         1 ~Tv~~LK~~l~e~-tGipp-~~QKLifkGK~L~d~~~L~~~--GvkdgSki~Lv   50 (214)
                      .||++||++|++. +|+|| ++|||||+||.|+|+.+|..|  ||++|++|||+
T Consensus        46 ~TV~~LK~~I~~~~~g~pp~~~QrLIy~Gk~L~D~~tL~~y~~~I~~~~tihLv   99 (99)
T 2kdb_A           46 WTVGKLKTHLSNVYPSKPLTKDQRLVYSGRLLPDHLQLKDILRKQDEYHMVHLV   99 (99)
T ss_dssp             SBHHHHHHHHHHHSTTCCCTTTCCEEETTEEECTTSBTHHHHTTTCSEEEEEEC
T ss_pred             CHHHHHHHHHHHHhcCCCChhhEEEEECCEECCCCCCHHHHhcCCCCCCEEEeC
Confidence            4899999999996 67775 999999999999999999999  99999999986

>2kdi_A Ubiquitin, vacuolar protein sorting-associated protein 27 fusion protein; ubiquitin interacting motif, UIM, protein domain interface; NMR {Saccharomyces cerevisiae}

Probab=99.33  E-value=1.3e-12  Score=101.08  Aligned_cols=53  Identities=28%  Similarity=0.517  Sum_probs=50.7

Q ss_pred             CcHHHHHHHHHHHhCCCCCCceEEecCeecCCcchhhhcCCCCCCEEEEeccc
Q 028093            1 MMIGDLKKAISEKTGLDPQEQKVLFRGKEKEDNEHLDVSGMKDKSKVLLLEEL   53 (214)
Q Consensus         1 ~Tv~~LK~~l~e~tGipp~~QKLifkGK~L~d~~~L~~~GvkdgSki~Lv~~p   53 (214)
                      .||.+||.+|++.+|+||++|||+|+|+.|+|+.+|.+|||++|++|+|+...
T Consensus        30 ~TV~~LK~~I~~~~gip~~~qrLi~~Gk~L~D~~tL~~ygI~~gstI~l~~~~   82 (114)
T 2kdi_A           30 DTIDNVKSKIQDKEGIPPDQQRLIWAGKQLEDGRTLSDYNIQRESTLHLVLRL   82 (114)
T ss_dssp             CBHHHHHHHHHHHHCCCGGGEEEEETTEECCTTCBTTTTTCCSSCEEEEEECC
T ss_pred             CcHHHHHHHHHHHHCcChHHEEEEECCEECCCCCcHHHCCCCCCCEEEEEEEc
Confidence            48999999999999999999999999999999999999999999999999763

>1wyw_B Ubiquitin-like protein SMT3C; hydrolase; 2.10A {Homo sapiens} SCOP: d.15.1.1 PDB: 1y8r_C* 2asq_A 2pe6_B 1a5r_A 2kqs_A 3kyc_D* 3rzw_C

Probab=99.33  E-value=1e-12  Score=98.38  Aligned_cols=52  Identities=21%  Similarity=0.410  Sum_probs=49.9

Q ss_pred             CcHHHHHHHHHHHhCCCCCCceEEecCeecCCcchhhhcCCCCCCEEEEecc
Q 028093            1 MMIGDLKKAISEKTGLDPQEQKVLFRGKEKEDNEHLDVSGMKDKSKVLLLEE   52 (214)
Q Consensus         1 ~Tv~~LK~~l~e~tGipp~~QKLifkGK~L~d~~~L~~~GvkdgSki~Lv~~   52 (214)
                      .||++||.++++++|||+++|||||.|+.|+|+.+|..|||++|++|+|+..
T Consensus        42 ~tv~~lK~~i~~~~gip~~~qrLif~Gk~L~d~~tl~dy~i~~g~~I~l~~~   93 (97)
T 1wyw_B           42 THLKKLKESYCQRQGVPMNSLRFLFEGQRIADNHTPKELGMEEEDVIEVYQE   93 (97)
T ss_dssp             SCTHHHHHHHHHHHTCCGGGEEEEETTEECCTTCCHHHHTCCTTCEEEEEES
T ss_pred             CcHHHHHHHHHHHHCCChhhEEEEECCeEcCCCCCHHHCCCCCCCEEEEEEe
Confidence            4899999999999999999999999999999999999999999999999864

>2fnj_B Transcription elongation factor B polypeptide 2; beta-sandwich, lectin-like, SPRY, protein transport/signaling protein complex; 1.80A {Mus musculus} SCOP: d.15.1.1 PDB: 1lm8_B 1lqb_A 1vcb_A 2c9w_B 2izv_B 2jz3_B 2xai_C 3dcg_A 3zrc_A* 3zrf_A

Probab=99.33  E-value=8.9e-13  Score=103.96  Aligned_cols=52  Identities=19%  Similarity=0.219  Sum_probs=49.9

Q ss_pred             CcHHHHHHHHHHHhCCCCCCceEEecCeecCCcchhhhcCCC-------CCCEEEEecc
Q 028093            1 MMIGDLKKAISEKTGLDPQEQKVLFRGKEKEDNEHLDVSGMK-------DKSKVLLLEE   52 (214)
Q Consensus         1 ~Tv~~LK~~l~e~tGipp~~QKLifkGK~L~d~~~L~~~Gvk-------dgSki~Lv~~   52 (214)
                      .||++||.+|++++||||++|||||.||.|+|+.+|+.|||+       ++|+|||+-.
T Consensus        22 dTV~~lK~kI~~~egIP~~qQrLi~~Gk~LeD~~TLsdy~I~~~~a~~q~~stL~L~lr   80 (118)
T 2fnj_B           22 STVFELKRIVEGILKRPPEEQRLYKDDQLLDDGKTLGECGFTSQTARPQAPATVGLAFR   80 (118)
T ss_dssp             SBHHHHHHHHHHHHCCCGGGEEEEETTEECCTTSBHHHHTCCTTTSBTTBCEEEEEEEB
T ss_pred             ChHHHHHHHHHHHhCCCHHHeEEEECCeECCCCCCHHHcCcccccccCCCCCEEEEEec
Confidence            489999999999999999999999999999999999999999       7999999875

>1we7_A SF3A1 protein; structural genomics, ubiquitin-like domain, riken structural genomics/proteomics initiative, RSGI, gene regulation; NMR {Mus musculus} SCOP: d.15.1.1 PDB: 1zkh_A

Probab=99.33  E-value=1.3e-12  Score=100.64  Aligned_cols=52  Identities=23%  Similarity=0.277  Sum_probs=50.0

Q ss_pred             CcHHHHHHHHHHHhCCCCCCceEEecCeecCCcchhhhcCCCCCCEEEEecc
Q 028093            1 MMIGDLKKAISEKTGLDPQEQKVLFRGKEKEDNEHLDVSGMKDKSKVLLLEE   52 (214)
Q Consensus         1 ~Tv~~LK~~l~e~tGipp~~QKLifkGK~L~d~~~L~~~GvkdgSki~Lv~~   52 (214)
                      .||.+||.+|++.+|+|+++|||+|+|+.|+|+.+|..|||++|++|||+..
T Consensus        56 ~TV~~LK~~I~~~~gip~~~QrL~~~Gk~L~D~~tL~~y~i~~g~~i~lv~r  107 (115)
T 1we7_A           56 DQVSVIKVKIHEATGMPAGKQKLQYEGIFIKDSNSLAYYNMASGAVIHLALK  107 (115)
T ss_dssp             SBTHHHHHHHHHHSSCCTTTEEEEETTEEECTTSBHHHHTCCSSCEEEEEEC
T ss_pred             CCHHHHHHHHHHHHCCChHHEEEEECCEECCCCCCHHHCCCCCCCEEEEEEE
Confidence            4899999999999999999999999999999999999999999999999864

>2ojr_A Ubiquitin; lanthide-binding TAG, terbium, TB, SAD phasing, protein binding; 2.60A {Homo sapiens}

Probab=99.31  E-value=2.6e-12  Score=98.39  Aligned_cols=52  Identities=29%  Similarity=0.519  Sum_probs=50.0

Q ss_pred             CcHHHHHHHHHHHhCCCCCCceEEecCeecCCcchhhhcCCCCCCEEEEecc
Q 028093            1 MMIGDLKKAISEKTGLDPQEQKVLFRGKEKEDNEHLDVSGMKDKSKVLLLEE   52 (214)
Q Consensus         1 ~Tv~~LK~~l~e~tGipp~~QKLifkGK~L~d~~~L~~~GvkdgSki~Lv~~   52 (214)
                      .||.+||.+|++.+|+|+++|||+|+|+.|+|+.+|.+|||++|++|||+..
T Consensus        56 ~TV~~LK~~I~~~~gip~~~qrLi~~Gk~L~D~~tL~~~gI~~gs~I~l~~r  107 (111)
T 2ojr_A           56 DTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLR  107 (111)
T ss_dssp             CBHHHHHHHHHHHHCCCTTTEEEEETTEECCSSCBTTTTTCCTTCEEEEEEC
T ss_pred             CCHHHHHHHHHHHHCcCcccEEEEECCEECCCCCcHHHcCCCCCCEEEEEEe
Confidence            4899999999999999999999999999999999999999999999999864

>4dbg_A Ranbp-type and C3HC4-type zinc finger-containing; ubiquitin fold, ubiquitination, ligase; 2.71A {Homo sapiens} PDB: 2lgy_A

Probab=99.31  E-value=2e-12  Score=100.08  Aligned_cols=54  Identities=20%  Similarity=0.278  Sum_probs=50.2

Q ss_pred             CcHHHHHHHHHHHhCCCCCCceEEecCeecCCcchhhhcCC-CCCCEEEEecccc
Q 028093            1 MMIGDLKKAISEKTGLDPQEQKVLFRGKEKEDNEHLDVSGM-KDKSKVLLLEELT   54 (214)
Q Consensus         1 ~Tv~~LK~~l~e~tGipp~~QKLifkGK~L~d~~~L~~~Gv-kdgSki~Lv~~p~   54 (214)
                      +||++||++|+++.||||++|||||+|+.++|+.+|.+||| ++|++|||+--.+
T Consensus        47 ~TV~~LK~~I~~k~Gipp~~QRli~ggkll~D~~TL~~ygI~~~G~t~hL~l~~~  101 (105)
T 4dbg_A           47 MTVASLKDMVFLDYGFPPVLQQWVIGQRLARDQETLHSHGVRQNGDSAYLYLLSA  101 (105)
T ss_dssp             CBHHHHHHHHHHHHCCCGGGEEEEETTEEECTTCBTGGGTCCSTTCEEEEEECCC
T ss_pred             ChHHHHHHHHHHHhCCCHHHEEEeccCeEccCcCcHHHcCCCCCCCEEEEEEEec
Confidence            58999999999999999999999999998899999999999 5999999987543

>1v6e_A Cytoskeleton-associated protein 1; tubulin-specific chaperone B, tubulin folding cofactor B, microtubule, ubiquitin-like fold, structural genomics; NMR {Mus musculus} SCOP: d.15.1.1

Probab=99.29  E-value=2.8e-12  Score=95.72  Aligned_cols=52  Identities=13%  Similarity=0.250  Sum_probs=47.9

Q ss_pred             CcHHHHHHHHHHHhCCCCCCceEEecC---ee----cCCcchhhhcCCCCCCEEEEecc
Q 028093            1 MMIGDLKKAISEKTGLDPQEQKVLFRG---KE----KEDNEHLDVSGMKDKSKVLLLEE   52 (214)
Q Consensus         1 ~Tv~~LK~~l~e~tGipp~~QKLifkG---K~----L~d~~~L~~~GvkdgSki~Lv~~   52 (214)
                      .||++||.+|+..+||||++|||+|+|   +.    ++|+.+|..|||++|++|||+..
T Consensus        29 ~TV~~lK~ki~~~~gip~~~qrL~~~~~~g~~~~~l~~D~~tL~~y~i~~g~~l~v~d~   87 (95)
T 1v6e_A           29 LTIAEFKCKLELVVGSPASCMELELYGADDKFYSKLDQEDALLGSYPVDDGCRIHVIDH   87 (95)
T ss_dssp             SBHHHHHHHHHHHTCSCTTTCBCEEECSSSCEEEECCCSSSBTTSSSCCTTCEEEEBCC
T ss_pred             CHHHHHHHHHHHHHCCCHHHeEEEEeCCCCccccccCCCcCCHhHCCCCCCCEEEEEEC
Confidence            589999999999999999999999997   43    48999999999999999999874

>3rt3_B Ubiquitin-like protein ISG15; ubiquitin-like domain, isgylation, antiviral protein-viral P complex; 2.01A {Homo sapiens} PDB: 3sdl_C 3r66_C 3pse_B 1z2m_A

Probab=99.28  E-value=3.7e-12  Score=101.80  Aligned_cols=52  Identities=27%  Similarity=0.317  Sum_probs=50.1

Q ss_pred             CcHHHHHHHHHHHhCCCCCCceEEecCeecCCcchhhhcCCCCCCEEEEecc
Q 028093            1 MMIGDLKKAISEKTGLDPQEQKVLFRGKEKEDNEHLDVSGMKDKSKVLLLEE   52 (214)
Q Consensus         1 ~Tv~~LK~~l~e~tGipp~~QKLifkGK~L~d~~~L~~~GvkdgSki~Lv~~   52 (214)
                      .||++||.+|++.+|+||++|||+|+|+.|+|+.+|.+|||++||+|||+..
T Consensus       102 ~tV~~lK~~i~~~~gip~~~q~L~~~G~~L~d~~tL~~y~i~~g~~l~l~~r  153 (159)
T 3rt3_B          102 QTVAHLKQQVSGLEGVQDDLFWLTFEGKPLEDQLPLGEYGLKPLSTVFMNLR  153 (159)
T ss_dssp             SBHHHHHHHHHHHHTCCGGGEEEEETTEECCTTSBGGGGTCCTTCEEEEEEC
T ss_pred             CCHHHHHHHHHHHHCCCHHHEEEEECCeecCCCCCHHHcCCCCCCEEEEEEe
Confidence            4899999999999999999999999999999999999999999999999974

>3l0w_B Monoubiquitinated proliferating cell nuclear antigen, proliferating cell nuclear antigen; replication, DNA damage, DNA repair; 2.80A {Saccharomyces cerevisiae} PDB: 3l10_B

Probab=99.28  E-value=4.7e-12  Score=104.23  Aligned_cols=52  Identities=29%  Similarity=0.528  Sum_probs=50.1

Q ss_pred             CcHHHHHHHHHHHhCCCCCCceEEecCeecCCcchhhhcCCCCCCEEEEecc
Q 028093            1 MMIGDLKKAISEKTGLDPQEQKVLFRGKEKEDNEHLDVSGMKDKSKVLLLEE   52 (214)
Q Consensus         1 ~Tv~~LK~~l~e~tGipp~~QKLifkGK~L~d~~~L~~~GvkdgSki~Lv~~   52 (214)
                      .||++||.+|++.+|+||++|||+|+|+.|+|+.+|.+|||++|++|||+..
T Consensus        21 ~TV~~LK~~I~~~~gip~~~QrLi~~Gk~L~D~~tL~~y~I~~gstI~Lvlr   72 (169)
T 3l0w_B           21 DTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLR   72 (169)
T ss_dssp             CBHHHHHHHHHHHHCCCTTTEEEEETTEECCTTSBGGGGTCCTTCEEEEEEC
T ss_pred             CCHHHHHHHHHHHHCcCHHHEEEEECCccccCcCcHHHcCCCCCCEEEEEEE
Confidence            4899999999999999999999999999999999999999999999999964

>3shq_A UBLCP1; phosphatase, hydrolase; 1.96A {Drosophila melanogaster}

Probab=99.26  E-value=2.7e-12  Score=115.55  Aligned_cols=55  Identities=25%  Similarity=0.428  Sum_probs=50.2

Q ss_pred             CcHHHHHHHHHHHhCCCCCCceEE---ecCeecCCcchhhhcCCCCCCEEEEeccccc
Q 028093            1 MMIGDLKKAISEKTGLDPQEQKVL---FRGKEKEDNEHLDVSGMKDKSKVLLLEELTN   55 (214)
Q Consensus         1 ~Tv~~LK~~l~e~tGipp~~QKLi---fkGK~L~d~~~L~~~GvkdgSki~Lv~~p~s   55 (214)
                      .||++||++|++.|||||++||||   |+||.|+|+.+|+.|||++|++||||+++..
T Consensus        25 ~Tv~~lK~~I~~~tgVpp~~QkLi~~k~~Gk~l~D~~~L~~~~ik~g~~l~L~gs~~~   82 (320)
T 3shq_A           25 DTVEVLRHEIFRKTQVRPERQKLLNLKYKGKTAADNVKISALELKPNFKLMMVGSTEA   82 (320)
T ss_dssp             SBHHHHHHHHHHHHCCCGGGCEETTCBSSSSBCCTTSBTTSSCCC--CEEEEECCCC-
T ss_pred             CcHHHHHHHHHHHHCcCHHHeEEeecccCCcccCccccHHHcCCCCCCEEEEEccchh
Confidence            589999999999999999999999   9999999999999999999999999998765

>3b08_A Polyubiquitin-C, ubiquitin; protein complex, signaling protein-metal binding protein COM; HET: TRE; 1.70A {Homo sapiens} PDB: 2w9n_A* 3b0a_A* 3axc_A 2zvn_A 2zvo_A 2y5b_B

Probab=99.25  E-value=7.9e-12  Score=97.89  Aligned_cols=53  Identities=30%  Similarity=0.535  Sum_probs=50.8

Q ss_pred             CcHHHHHHHHHHHhCCCCCCceEEecCeecCCcchhhhcCCCCCCEEEEeccc
Q 028093            1 MMIGDLKKAISEKTGLDPQEQKVLFRGKEKEDNEHLDVSGMKDKSKVLLLEEL   53 (214)
Q Consensus         1 ~Tv~~LK~~l~e~tGipp~~QKLifkGK~L~d~~~L~~~GvkdgSki~Lv~~p   53 (214)
                      .||++||.+|++.+|+||++|||+|+|+.|+|+.+|.+|||++|++|||+..+
T Consensus        21 ~tv~~lK~~i~~~~gip~~~q~L~~~g~~L~d~~tL~~~~i~~~~~l~l~~~~   73 (152)
T 3b08_A           21 DTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRL   73 (152)
T ss_dssp             CBHHHHHHHHHHHHCCCGGGEEEEETTEECCTTSBTGGGTCCTTCEEEEEECC
T ss_pred             CCHHHHHHHHHHHHCcChHHeEEEECCeECcCcccHHHhccCCCCeeEEEeec
Confidence            48999999999999999999999999999999999999999999999999864

>3b08_A Polyubiquitin-C, ubiquitin; protein complex, signaling protein-metal binding protein COM; HET: TRE; 1.70A {Homo sapiens} PDB: 2w9n_A* 3b0a_A* 3axc_A 2zvn_A 2zvo_A 2y5b_B

Probab=99.24  E-value=8.8e-12  Score=97.61  Aligned_cols=52  Identities=29%  Similarity=0.519  Sum_probs=50.0

Q ss_pred             CcHHHHHHHHHHHhCCCCCCceEEecCeecCCcchhhhcCCCCCCEEEEecc
Q 028093            1 MMIGDLKKAISEKTGLDPQEQKVLFRGKEKEDNEHLDVSGMKDKSKVLLLEE   52 (214)
Q Consensus         1 ~Tv~~LK~~l~e~tGipp~~QKLifkGK~L~d~~~L~~~GvkdgSki~Lv~~   52 (214)
                      .||.+||++|++.+|+||++|||+|+|+.|+|+.+|.+|||++|++|||+..
T Consensus        97 ~tv~~lK~~i~~~~gi~~~~qrL~~~g~~L~d~~tL~~~~i~~~~~i~l~~r  148 (152)
T 3b08_A           97 DTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLR  148 (152)
T ss_dssp             CBHHHHHHHHHHHHCCCGGGEEEEETTEECCTTSBTGGGTCCTTCEEEEEEC
T ss_pred             CcHHHHHHHHHHHhCcChhhEEEEECCEECCCCCCHHHcCCCCCCEEEEEEe
Confidence            4899999999999999999999999999999999999999999999999874

>2dzm_A FAS-associated factor 1; ubiquitin-like domain, HFAF1, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.23  E-value=6.3e-12  Score=96.10  Aligned_cols=53  Identities=11%  Similarity=0.188  Sum_probs=47.4

Q ss_pred             CcHHHHHHHHHHHhCCCCCCceEEe-cCeecCCcchhhhcCCCCCCEEEEeccc
Q 028093            1 MMIGDLKKAISEKTGLDPQEQKVLF-RGKEKEDNEHLDVSGMKDKSKVLLLEEL   53 (214)
Q Consensus         1 ~Tv~~LK~~l~e~tGipp~~QKLif-kGK~L~d~~~L~~~GvkdgSki~Lv~~p   53 (214)
                      .||++||.+|+++|||||++|||+| +|+.|+|+.+|+.|||++|++|||+-.+
T Consensus        29 ~TV~~LK~~I~~~tgIpp~~QkLi~~~~gkL~D~~tLs~~~I~~gstL~lvl~~   82 (100)
T 2dzm_A           29 CTVGEIKQILENELQIPVSKMLLKGWKTGDVEDSTVLKSLHLPKNNSLYVLTPD   82 (100)
T ss_dssp             SBHHHHHHHHHHHHCCCTTTCCEECCSSSCCCTTSBHHHHCCCSEEEEEECCSS
T ss_pred             CcHHHHHHHHHHHHCCChhHeEEEccCCCCCCCcCCHHHcCCCCCCEEEEEecC
Confidence            4899999999999999999999997 4444999999999999999999998643

>1wgh_A Ubiquitin-like 3, HCG-1 protein; ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: d.15.1.1

Probab=99.23  E-value=1.7e-11  Score=96.04  Aligned_cols=59  Identities=15%  Similarity=0.196  Sum_probs=51.3

Q ss_pred             CcHHHHHHHHHH------HhCC--CCCCceEEecCeecCCcchhhhcCCCCC--CEEEEeccccccccC
Q 028093            1 MMIGDLKKAISE------KTGL--DPQEQKVLFRGKEKEDNEHLDVSGMKDK--SKVLLLEELTNKEKK   59 (214)
Q Consensus         1 ~Tv~~LK~~l~e------~tGi--pp~~QKLifkGK~L~d~~~L~~~Gvkdg--Ski~Lv~~p~s~e~r   59 (214)
                      .||++||++|++      ++|+  |+++|||||.||.|+|+.+|++|||+.+  ++|||+..+...++.
T Consensus        37 ~TV~~lK~kI~~~~p~dwke~~p~p~~qqrLIy~GK~LeD~~TL~~y~I~~~~~~tlhLvlr~~~~~~~  105 (116)
T 1wgh_A           37 DSASDIAKHVYDNWPMDWEEEQVSSPNILRLIYQGRFLHGNVTLGALKLPFGKTTVMHLVARETLPEPN  105 (116)
T ss_dssp             CBHHHHHHHHHHSSSCCSSCCCCCCTTTEEEEETTEEECSSCBTTTTTCCSSCEEEEEEEECSSCSSSC
T ss_pred             CHHHHHHHHHHHhcccccccCCCCChHHEEEEECCcCCCCCCcHHHcCCCCCCceEEEEEccCCCCCCC
Confidence            489999999999      7786  5999999999999999999999999877  679999876655543

>3u30_A Ubiquitin, linear DI-ubiquitin; immune system; 2.43A {Homo sapiens}

Probab=99.22  E-value=1.1e-11  Score=100.69  Aligned_cols=52  Identities=29%  Similarity=0.519  Sum_probs=50.1

Q ss_pred             CcHHHHHHHHHHHhCCCCCCceEEecCeecCCcchhhhcCCCCCCEEEEecc
Q 028093            1 MMIGDLKKAISEKTGLDPQEQKVLFRGKEKEDNEHLDVSGMKDKSKVLLLEE   52 (214)
Q Consensus         1 ~Tv~~LK~~l~e~tGipp~~QKLifkGK~L~d~~~L~~~GvkdgSki~Lv~~   52 (214)
                      .||++||.+|++.+|+|+++|||+|+|+.|+|+.+|.+|||++|++|+|+..
T Consensus        41 ~tV~~lK~~I~~~~gip~~~QrL~~~g~~L~d~~tL~~~~i~~~~~l~l~~~   92 (172)
T 3u30_A           41 DTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLR   92 (172)
T ss_dssp             CBHHHHHHHHHHHHCCCGGGEEEEETTEECCTTCBTGGGTCCTTCEEEEEEC
T ss_pred             CcHHHHHHHHHHHHCcChHHEEEEECCccccccCCHhHcCCcccceeeeeec
Confidence            4899999999999999999999999999999999999999999999999965

>3u5e_m 60S ribosomal protein L40; translation, ribosome, ribosomal R ribosomal protein, STM1, eukaryotic ribosome; 3.00A {Saccharomyces cerevisiae} PDB: 3u5i_m 4b6a_m 4a18_K 4a19_K 4a1b_K 4a1d_K 4adx_5 3izc_p 3izs_p 3iz5_p 3izr_p

Probab=99.22  E-value=1e-12  Score=103.11  Aligned_cols=52  Identities=29%  Similarity=0.528  Sum_probs=0.0

Q ss_pred             CcHHHHHHHHHHHhCCCCCCceEEecCeecCCcchhhhcCCCCCCEEEEecc
Q 028093            1 MMIGDLKKAISEKTGLDPQEQKVLFRGKEKEDNEHLDVSGMKDKSKVLLLEE   52 (214)
Q Consensus         1 ~Tv~~LK~~l~e~tGipp~~QKLifkGK~L~d~~~L~~~GvkdgSki~Lv~~   52 (214)
                      .||++||.+|++.+||||++|||+|+|+.|+|+.+|++|||++||+|+|+..
T Consensus        21 ~TV~~LK~~I~~~~gip~~~QrLi~~Gk~L~D~~tL~~~~I~~gsti~l~~r   72 (128)
T 3u5e_m           21 DTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLR   72 (128)
T ss_dssp             ----------------------------------------------------
T ss_pred             CCHHHHHHHHHHHhCcChHHEEEEECCEECCCCCchhhhccCCCCEEEEEEE
Confidence            4899999999999999999999999999999999999999999999999975

>3rt3_B Ubiquitin-like protein ISG15; ubiquitin-like domain, isgylation, antiviral protein-viral P complex; 2.01A {Homo sapiens} PDB: 3sdl_C 3r66_C 3pse_B 1z2m_A

Probab=99.22  E-value=1.2e-11  Score=98.72  Aligned_cols=52  Identities=29%  Similarity=0.460  Sum_probs=50.3

Q ss_pred             CcHHHHHHHHHHHhCCCCCCceEE-e-cCeecCCcchhhhcCCCCCCEEEEecc
Q 028093            1 MMIGDLKKAISEKTGLDPQEQKVL-F-RGKEKEDNEHLDVSGMKDKSKVLLLEE   52 (214)
Q Consensus         1 ~Tv~~LK~~l~e~tGipp~~QKLi-f-kGK~L~d~~~L~~~GvkdgSki~Lv~~   52 (214)
                      .||++||.+|++.+|+||++|||+ | +|+.|+|+.+|.+|||++|++|||+..
T Consensus        23 ~tV~~lK~~I~~~~gip~~~QrL~~~~~g~~L~d~~tL~~y~i~~~~~l~l~~~   76 (159)
T 3rt3_B           23 MSVSELKAQITQKIGVHAFQQRLAVHPSGVALQDRVPLASQGLGPGSTVLLVVD   76 (159)
T ss_dssp             CCHHHHHHHHHHHHCCCGGGEEEEEETTCCBCCTTSCGGGGTCCTTCEEEEEEC
T ss_pred             CcHHHHHHHHHHHhCCCHHHEEEEEcCCCCCCCCCCCHHHcCCCCCCEEEEEcc
Confidence            489999999999999999999999 9 799999999999999999999999987

>1wia_A Hypothetical ubiquitin-like protein (riken cDNA 2010008E23); 'structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1

Probab=99.21  E-value=1.6e-11  Score=90.83  Aligned_cols=50  Identities=14%  Similarity=0.232  Sum_probs=47.0

Q ss_pred             CcHHHHHHHHHHHhCCCCCCceEEecCeecCCc-chhhhcCCCCCCEEEEeccc
Q 028093            1 MMIGDLKKAISEKTGLDPQEQKVLFRGKEKEDN-EHLDVSGMKDKSKVLLLEEL   53 (214)
Q Consensus         1 ~Tv~~LK~~l~e~tGipp~~QKLifkGK~L~d~-~~L~~~GvkdgSki~Lv~~p   53 (214)
                      .||++||.+|++.+   +++|||||+||.|+|+ .+|..|||++|++|||+..+
T Consensus        28 ~TV~~LK~~i~~~~---~~~qrLi~~Gk~L~D~~~tL~~y~i~~g~~i~l~~~~   78 (95)
T 1wia_A           28 DTVGTLKSKYFPGQ---ESQMKLIYQGRLLQDPARTLSSLNITNNCVIHCHRSP   78 (95)
T ss_dssp             SBHHHHHHHHSSST---TTTCEEEETTEECCCSSCBTTTTTCCTTEEEEEECCC
T ss_pred             CcHHHHHHHHHhhC---cCcEEEEECCEEccCCcCCHHHcCCCCCCEEEEEECC
Confidence            48999999999998   8999999999999888 99999999999999999864

>3q3f_A Ribonuclease/ubiquitin chimeric protein; domain SWAP, oligomerization, ubiquitin insertion, hydrolase binding; 2.17A {Bacillus amyloliquefaciens}

Probab=99.20  E-value=1.4e-11  Score=103.87  Aligned_cols=52  Identities=29%  Similarity=0.519  Sum_probs=50.3

Q ss_pred             CcHHHHHHHHHHHhCCCCCCceEEecCeecCCcchhhhcCCCCCCEEEEecc
Q 028093            1 MMIGDLKKAISEKTGLDPQEQKVLFRGKEKEDNEHLDVSGMKDKSKVLLLEE   52 (214)
Q Consensus         1 ~Tv~~LK~~l~e~tGipp~~QKLifkGK~L~d~~~L~~~GvkdgSki~Lv~~   52 (214)
                      .||.+||.+|++.+||||++|||||+|+.|+|+.+|++|||++||+|||+..
T Consensus       126 ~TV~~LK~kI~~~~gIp~~~QrLi~~Gk~L~D~~tL~dygI~~gstI~Lvlr  177 (189)
T 3q3f_A          126 DTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLR  177 (189)
T ss_dssp             CBHHHHHHHHHHHHCCCGGGCCEEETTEECCTTCBGGGGTCCTTCEEEECCC
T ss_pred             CcHHHHHHHHHhccCCCHHHEEEEECCEECCCCCCHHHCCCCCCCEEEEEEE
Confidence            5899999999999999999999999999999999999999999999999975

>1se9_A Ubiquitin family; ubiquitin-like, cell-free, wheat GERM, structural genomics, protein structure initiative, CESG; NMR {Arabidopsis thaliana} SCOP: d.15.1.1

Probab=99.19  E-value=1.6e-11  Score=97.85  Aligned_cols=55  Identities=16%  Similarity=0.184  Sum_probs=49.2

Q ss_pred             CcHHHHHHHH-----HHHhCCCC--CCceEEecCeecCCcchhhhcCCCCC------CEEEEeccccc
Q 028093            1 MMIGDLKKAI-----SEKTGLDP--QEQKVLFRGKEKEDNEHLDVSGMKDK------SKVLLLEELTN   55 (214)
Q Consensus         1 ~Tv~~LK~~l-----~e~tGipp--~~QKLifkGK~L~d~~~L~~~Gvkdg------Ski~Lv~~p~s   55 (214)
                      .||.+||++|     .+.+|+|+  ++|||||.||.|+|+.+|++|+|++|      ++|||+-.+..
T Consensus        38 dTV~~lK~kI~~~~p~dkegiP~~~~qQrLIy~GK~LeD~~TLsdy~I~~~~~~~~v~tmhlVlrl~g  105 (126)
T 1se9_A           38 TTVSALKETVISEWPREKENGPKTVKEVKLISAGKVLENSKTVKDYRSPVSNLAGAVTTMHVIIQAPV  105 (126)
T ss_dssp             CBHHHHHHHHHHHSCTTCSSSCCSGGGEEEEETTEECCTTSBGGGGSCCTTSCTTCCEEEEEEECCCS
T ss_pred             CHHHHHHHHHHhhcccccccCCCChhhEEEEECCeECcCCCcHHHcCCCcCCccCCcEEEEEEeccCC
Confidence            5899999999     56789997  89999999999999999999999999      68999876544

>1t0y_A Tubulin folding cofactor B; ubiquitin-like, cytoskeleton, microtubule, CESG, structural genomics, protein structure initiative, PSI; NMR {Caenorhabditis elegans} SCOP: d.15.1.1

Probab=99.18  E-value=2.2e-11  Score=95.11  Aligned_cols=52  Identities=19%  Similarity=0.321  Sum_probs=47.9

Q ss_pred             CcHHHHHHHHHHHhCCCCCCceEEecC---e---ec-CCcchhhhcCCCCCCEEEEecc
Q 028093            1 MMIGDLKKAISEKTGLDPQEQKVLFRG---K---EK-EDNEHLDVSGMKDKSKVLLLEE   52 (214)
Q Consensus         1 ~Tv~~LK~~l~e~tGipp~~QKLifkG---K---~L-~d~~~L~~~GvkdgSki~Lv~~   52 (214)
                      .||++||.+|+..+||||++|||+|.|   +   .| +|+.+|..|||++|++|||+..
T Consensus        28 ~TV~~lK~ki~~~~Gip~~~qrL~~~g~~~~~~~~l~~D~~tL~~y~i~~g~~ihvvd~   86 (122)
T 1t0y_A           28 MSLNDLKKKLELVVGTTVDSMRIQLFDGDDQLKGELTDGAKSLKDLGVRDGYRIHAVDV   86 (122)
T ss_dssp             SBHHHHHHHHHHHHCCCTTTEEEEEECSSSSEEEECCCCSSBTTTTTCCSSEEEEEEEC
T ss_pred             CcHHHHHHHHHHHhCCCHHHeEEEEecCCCccccccCCCcCCHHHCCCCCCCEEEEEeC
Confidence            489999999999999999999999988   4   34 8999999999999999999974

>1v2y_A 3300001G02RIK protein; hypothetical protein, ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1

Probab=99.18  E-value=6.4e-12  Score=96.95  Aligned_cols=52  Identities=25%  Similarity=0.394  Sum_probs=47.9

Q ss_pred             CcHHHHHHHHHHHhCCCC---------------CCceEEecCeec-CCcchhhhcCCCCCCEEEEecc
Q 028093            1 MMIGDLKKAISEKTGLDP---------------QEQKVLFRGKEK-EDNEHLDVSGMKDKSKVLLLEE   52 (214)
Q Consensus         1 ~Tv~~LK~~l~e~tGipp---------------~~QKLifkGK~L-~d~~~L~~~GvkdgSki~Lv~~   52 (214)
                      .||++||++|++++|+||               ++|+|||.||.| +|+.+|.+|||++|++|||+-.
T Consensus        28 ~TV~dLK~~I~~~~~i~~~~q~g~~~isw~~~w~q~~Li~~Gk~L~dD~~tL~dygI~~g~~l~lv~~   95 (105)
T 1v2y_A           28 ATVLDLKKAIQRYVQLKQEREGGVQHISWSYVWRTYHLTSAGEKLTEDRKKLRDYGIRNRDEVSFIKK   95 (105)
T ss_dssp             CBHHHHHHHHHHHHHHHHHHTTCCCCCCHHHHHTTEEEESSSCEECCSSSBHHHHTCCSSEEEEEEEC
T ss_pred             ChHHHHHHHHHHHhCCCcccccCcceeeeeecceeEEEEeCCcCccCCcCCHHHcCCCCCCEEEEEeh
Confidence            589999999999999998               467999999999 5789999999999999999975

>2gow_A HCG-1 protein, ubiquitin-like protein 3; BC059385, structural genomics, protein structure initiative, PSI; NMR {Homo sapiens}

Probab=99.15  E-value=2.6e-11  Score=96.07  Aligned_cols=57  Identities=16%  Similarity=0.173  Sum_probs=50.3

Q ss_pred             CcHHHHHHHHHH------HhCCC--CCCceEEecCeecCCcchhhhcCCCCCC--EEEEeccccccc
Q 028093            1 MMIGDLKKAISE------KTGLD--PQEQKVLFRGKEKEDNEHLDVSGMKDKS--KVLLLEELTNKE   57 (214)
Q Consensus         1 ~Tv~~LK~~l~e------~tGip--p~~QKLifkGK~L~d~~~L~~~GvkdgS--ki~Lv~~p~s~e   57 (214)
                      .||++||++|++      ++|+|  +++|||||.||.|+|+.+|++|||++|+  +|||+..+...+
T Consensus        38 ~TV~~lK~~I~~~~p~dwke~ip~~~~~qrLIy~GK~LeD~~TL~~y~I~~~~~~tlhlv~r~~~~~  104 (125)
T 2gow_A           38 DSASDIAKHVYDNWPMDWEEEQVSSPNILRLIYQGRFLHGNVTLGALKLPFGKTTVMHLVARETLPE  104 (125)
T ss_dssp             SBHHHHHHHHHSSCCCSCCCCTTCCGGGEEEESSSSEEESSCBTGGGCCCTTSEEEEEEEECSCCSS
T ss_pred             cHHHHHHHHHHHHCCcccccCCCCChHHEEEEECCcCCCCCCcHHHcCCCCCCceEEEEEecCCCCc
Confidence            489999999999      88995  8999999999999999999999999776  789888765443

>2dzj_A Synaptic glycoprotein SC2; ubiquitin-like fold, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.14  E-value=2.7e-11  Score=89.93  Aligned_cols=49  Identities=16%  Similarity=0.296  Sum_probs=45.9

Q ss_pred             CcHHHHHHHHHHH-hCCCCCCceEEec--CeecCCcchhhhcCCCCCCEEEE
Q 028093            1 MMIGDLKKAISEK-TGLDPQEQKVLFR--GKEKEDNEHLDVSGMKDKSKVLL   49 (214)
Q Consensus         1 ~Tv~~LK~~l~e~-tGipp~~QKLifk--GK~L~d~~~L~~~GvkdgSki~L   49 (214)
                      .||++||++|++. .|+||++|||+|.  ||.|+|+.+|++|||++|++||+
T Consensus        34 ~TV~~lK~~I~~~~~~i~~~~QrL~~~~~Gk~L~D~~tL~~y~i~~~stl~~   85 (88)
T 2dzj_A           34 ATIAEIKNLFTKTHPQWYPARQSLRLDPKGKSLKDEDVLQKLPVGTTATLYF   85 (88)
T ss_dssp             CBHHHHHHHHHHHCSSSCTTTCCEESSTTSCCCCTTCBTTTSSCCSEEEEEE
T ss_pred             CcHHHHHHHHHHHhcCCChHHeEEEecCCCcCcCCCCCHHHcCCCCCCEEEE
Confidence            4899999999995 8999999999976  99999999999999999999887

>3u5c_f 40S ribosomal protein S31; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3u5g_f

Probab=99.14  E-value=4.5e-12  Score=103.33  Aligned_cols=52  Identities=29%  Similarity=0.528  Sum_probs=0.0

Q ss_pred             CcHHHHHHHHHHHhCCCCCCceEEecCeecCCcchhhhcCCCCCCEEEEecc
Q 028093            1 MMIGDLKKAISEKTGLDPQEQKVLFRGKEKEDNEHLDVSGMKDKSKVLLLEE   52 (214)
Q Consensus         1 ~Tv~~LK~~l~e~tGipp~~QKLifkGK~L~d~~~L~~~GvkdgSki~Lv~~   52 (214)
                      .||++||.+|++.+||||++|||||+|+.|+|+.+|++|||++||+|+|+..
T Consensus        21 ~TV~~LK~~I~~~~gip~~~QrLi~~Gk~L~D~~tL~dygI~~gstL~Lvlr   72 (152)
T 3u5c_f           21 DTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLR   72 (152)
T ss_dssp             ----------------------------------------------------
T ss_pred             CCHHHHHHHHHHHhCCCHHHEEEEECCEEccccCcHHHcCCCCCCEEEEEee
Confidence            4899999999999999999999999999999999999999999999999975

>1wf9_A NPL4 family protein; beta-grAsp fold like domain, hypothetical protein, structural genomics, NPPSFA; NMR {Arabidopsis thaliana} SCOP: d.15.1.1

Probab=99.11  E-value=6.7e-11  Score=90.30  Aligned_cols=55  Identities=16%  Similarity=0.182  Sum_probs=50.5

Q ss_pred             CcHHHHHHHHHHHhCCCCCCceEEecCe-----------e----cCCcchhhhcCCCCCCEEEEeccccc
Q 028093            1 MMIGDLKKAISEKTGLDPQEQKVLFRGK-----------E----KEDNEHLDVSGMKDKSKVLLLEELTN   55 (214)
Q Consensus         1 ~Tv~~LK~~l~e~tGipp~~QKLifkGK-----------~----L~d~~~L~~~GvkdgSki~Lv~~p~s   55 (214)
                      .||.+||++|++.+||||++|+|+|.|+           .    ++|+.+|..|||++|++|||+..+..
T Consensus        28 ~Tv~~LK~kI~~~~gip~~~QrL~~~~~~~~~k~~~~~~~l~~~l~d~~tL~~~gi~~G~~L~l~~~~~~   97 (107)
T 1wf9_A           28 ITVSQLKTLIQDQLQIPIHNQTLSTNRNLLLAKSPSDFLAFTDMADPNLRISSLNLAHGSMVYLAYEGER   97 (107)
T ss_dssp             SBHHHHHHHHHHHSCCCTTTCCCBSSGGGGTCCSHHHHTTCCSSCCTTCBGGGTCCCTTCEEECCCSSCC
T ss_pred             CcHHHHHHHHHHHhCcCcccCEEEECCccccccCccccccccccCCCCCCHHHCCCCCCCEEEEEeCCCC
Confidence            4899999999999999999999999998           4    58999999999999999999987544

>2kzr_A Ubiquitin thioesterase OTU1; structural genomics, northeast structural genomics consortiu PSI-2, protein structure initiative, hydrolase; NMR {Mus musculus}

Probab=99.06  E-value=1.8e-10  Score=84.29  Aligned_cols=53  Identities=17%  Similarity=0.277  Sum_probs=48.2

Q ss_pred             CcHHHHHHHHHHHhCCCCCCceEEec--CeecC---CcchhhhcCCCCCCEEEEeccc
Q 028093            1 MMIGDLKKAISEKTGLDPQEQKVLFR--GKEKE---DNEHLDVSGMKDKSKVLLLEEL   53 (214)
Q Consensus         1 ~Tv~~LK~~l~e~tGipp~~QKLifk--GK~L~---d~~~L~~~GvkdgSki~Lv~~p   53 (214)
                      .||++||..|++.+|||++.|||+|.  ||.++   |+.+|.+|||++|++|||..+.
T Consensus        21 ~Tv~~Lk~~I~~~~gi~~~~qrL~~~~p~k~l~l~~~~~tL~~~gl~~g~~l~v~~~~   78 (86)
T 2kzr_A           21 TRLRELQGQIAAITGIAPGSQRILVGYPPECLDLSDRDITLGDLPIQSGDMLIVEEDQ   78 (86)
T ss_dssp             CBHHHHHHHHHHHTCCCTTTCCCEESSCCCCCCCCCSSCBTTTSSCCTTCEEECCCCS
T ss_pred             CCHHHHHHHHHHHhCCCccceEEEeCCCCcccccCCCCCCHHHcCCCCCCEEEEEeCC
Confidence            58999999999999999999999997  48874   7889999999999999999864

>1oqy_A HHR23A, UV excision repair protein RAD23 homolog A; DNA repair, proteasome-mediated degradation, protein- protein interaction, replication; NMR {Homo sapiens} SCOP: a.5.2.1 a.5.2.1 a.189.1.1 d.15.1.1 PDB: 1qze_A 1tp4_A

Probab=99.00  E-value=2.3e-10  Score=104.92  Aligned_cols=50  Identities=20%  Similarity=0.318  Sum_probs=46.7

Q ss_pred             CcHHHHHHHHHH---HhCCCCCCceEEecCeecCCcchhhhcCCCCCCEEEEe
Q 028093            1 MMIGDLKKAISE---KTGLDPQEQKVLFRGKEKEDNEHLDVSGMKDKSKVLLL   50 (214)
Q Consensus         1 ~Tv~~LK~~l~e---~tGipp~~QKLifkGK~L~d~~~L~~~GvkdgSki~Lv   50 (214)
                      .||++||++|++   ++|||+++|||||+||.|+|+.+|..|||++|++|+++
T Consensus        28 ~TV~~LK~~I~~~~~~~gip~~~QrLiy~GK~L~D~~tL~dygI~~gstIv~l   80 (368)
T 1oqy_A           28 ETVKVLKEKIEAEKGRDAFPVAGQKLIYAGKILSDDVPIRDYRIDEKNFVVVM   80 (368)
T ss_dssp             CBHHHHHHHHHHHTCSSSCCSTEEEEESSSSEECSSSBTTTTCCCTTSCEEEE
T ss_pred             ChHHHHHHHHHHHhCcCCCChhheEEEECCeecCCcCCHHHcCCCCCCEEEEE
Confidence            489999999999   68899999999999999999999999999999999444

>1wjn_A Tubulin-folding protein TBCE; ubiquitin-like domain, progressive motor neuropathy, structural genomics; NMR {Mus musculus} SCOP: d.15.1.1

Probab=98.98  E-value=7e-10  Score=82.77  Aligned_cols=52  Identities=13%  Similarity=0.136  Sum_probs=47.1

Q ss_pred             CcHHHHHHHHHHHhCCCCCCceEEecC------ee-c-CCcchhhhcCCCCCCEEEEecc
Q 028093            1 MMIGDLKKAISEKTGLDPQEQKVLFRG------KE-K-EDNEHLDVSGMKDKSKVLLLEE   52 (214)
Q Consensus         1 ~Tv~~LK~~l~e~tGipp~~QKLifkG------K~-L-~d~~~L~~~GvkdgSki~Lv~~   52 (214)
                      +||++||.+|+..+|+||..|||+|.+      .. | +|..+|..|||.+|++||++..
T Consensus        33 ~TV~~LK~~i~~~~gip~~~q~L~~~~~~~~~~~~~L~~d~~~L~~y~i~~G~~I~V~d~   92 (97)
T 1wjn_A           33 MTVQKVKGLLSRLLKVPVSELLLSYESSKMPGREIELENDLQPLQFYSVENGDCLLVRWS   92 (97)
T ss_dssp             SBHHHHHHHHHTTTTCCTTTCEEEEECTTSCSCEEECCCSSSBSGGGTCCTTCEEEEECC
T ss_pred             CCHHHHHHHHHHHHCCChhHeEEEEEcCCCCceeeccCCCcccHhhcCCCCCCEEEEEec
Confidence            599999999999999999999999984      22 5 7999999999999999999884

>2xzm_9 RPS31E; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_9

Probab=98.72  E-value=1.3e-09  Score=92.10  Aligned_cols=47  Identities=21%  Similarity=0.237  Sum_probs=0.0

Q ss_pred             CcHHHHHHHHHHHhCCCCCCceEEecCeecCCcchhhhcCCCCCCEEEEecc
Q 028093            1 MMIGDLKKAISEKTGLDPQEQKVLFRGKEKEDNEHLDVSGMKDKSKVLLLEE   52 (214)
Q Consensus         1 ~Tv~~LK~~l~e~tGipp~~QKLifkGK~L~d~~~L~~~GvkdgSki~Lv~~   52 (214)
                      .||.+||.+|++.+||||++|||||.|++|+|+.+|+     ++|+|||+..
T Consensus        21 dTV~~LK~kI~~keGIP~~qQRLIf~GK~LeD~~TLs-----~~STLhLvlR   67 (189)
T 2xzm_9           21 TSVLDLKSQISQDMGFEIDMMTLVNNGFIAPNTELVT-----DDVTYYLSLK   67 (189)
T ss_dssp             ----------------------------------------------------
T ss_pred             ChHHHHHHHHHHHhCcChhHEEEEecCeECCCCCccc-----CCCEEEEEEe
Confidence            4899999999999999999999999999999999998     9999999853

>1wm3_A Ubiquitin-like protein SMT3B; ubiquitin fold, half-open barrel, two helices, protein transport; 1.20A {Homo sapiens} SCOP: d.15.1.1 PDB: 1wm2_A 3uin_B 3uio_B 2ckh_B

Probab=98.69  E-value=2.4e-08  Score=70.92  Aligned_cols=50  Identities=20%  Similarity=0.347  Sum_probs=47.7

Q ss_pred             CcHHHHHHHHHHHhCCCCCCceEEecCeecCCcchhhhcCCCCCCEEEEe
Q 028093            1 MMIGDLKKAISEKTGLDPQEQKVLFRGKEKEDNEHLDVSGMKDKSKVLLL   50 (214)
Q Consensus         1 ~Tv~~LK~~l~e~tGipp~~QKLifkGK~L~d~~~L~~~GvkdgSki~Lv   50 (214)
                      +++..|+...+++.|+|+++|||+|.|+.+.++.|..+||+.+|+.|+++
T Consensus        22 t~l~kl~~~y~~~~gi~~~~~rf~fdG~~l~~~~Tp~~l~medgD~Idv~   71 (72)
T 1wm3_A           22 TPLSKLMKAYCERQGLSMRQIRFRFDGQPINETDTPAQLEMEDEDTIDVF   71 (72)
T ss_dssp             SCTHHHHHHHHHHHTCCTTTCEEEETTEECCTTCCTTTTTCCTTEEEEEE
T ss_pred             ChHHHHHHHHHHHhCCCcceEEEEECCEEcCCCCCHHHcCCCCCCEEEEE
Confidence            46889999999999999999999999999999999999999999999986

>2io1_B Small ubiquitin-related modifier 3 precursor; SUMO, SENP, ULP, complex, protein binding, hydrolase; 2.60A {Homo sapiens} SCOP: d.15.1.1

Probab=98.69  E-value=1.9e-08  Score=75.56  Aligned_cols=52  Identities=19%  Similarity=0.355  Sum_probs=49.4

Q ss_pred             CcHHHHHHHHHHHhCCCCCCceEEecCeecCCcchhhhcCCCCCCEEEEecc
Q 028093            1 MMIGDLKKAISEKTGLDPQEQKVLFRGKEKEDNEHLDVSGMKDKSKVLLLEE   52 (214)
Q Consensus         1 ~Tv~~LK~~l~e~tGipp~~QKLifkGK~L~d~~~L~~~GvkdgSki~Lv~~   52 (214)
                      +++..|+...+++.|+|+++|||+|.|+.|.++.++.+|++.+|++|+++-.
T Consensus        28 t~l~kl~~~y~~~~gi~~~~~rf~FdG~~l~~~~Tp~dl~medgD~Idv~~~   79 (94)
T 2io1_B           28 TPLSKLMKAYCERQGLSMRQIRFRFDGQPINETDTPAQLEMEDEDTIDVFQQ   79 (94)
T ss_dssp             SCTHHHHHHHHHHHTCCGGGEEEEETTEECCTTCCTTTTTCCTTCEEEEEEC
T ss_pred             CHHHHHHHHHHHHhCCCcccEEEEECCEEcCCCCCHHHcCCCCCCEEEEEEe
Confidence            4788999999999999999999999999999999999999999999999864

>3a4r_A Nfatc2-interacting protein; ubiquitin fold, coiled coil, cytoplasm, methylation, nucleus, transcription; 1.00A {Mus musculus} PDB: 3a4s_C 3rd2_A

Probab=98.68  E-value=3.6e-08  Score=71.49  Aligned_cols=51  Identities=16%  Similarity=0.186  Sum_probs=48.3

Q ss_pred             CcHHHHHHHHHHHhCCCCCCceEEecCeecCCcchhhhcCCCCCCEEEEec
Q 028093            1 MMIGDLKKAISEKTGLDPQEQKVLFRGKEKEDNEHLDVSGMKDKSKVLLLE   51 (214)
Q Consensus         1 ~Tv~~LK~~l~e~tGipp~~QKLifkGK~L~d~~~L~~~GvkdgSki~Lv~   51 (214)
                      +++..|+...+++.|+++++|||+|.|+.|.++.|..+||+.+|+.|++++
T Consensus        29 t~l~kl~~~y~~~~gi~~~~~rf~fdG~~l~~~~Tp~~l~medgD~Idv~~   79 (79)
T 3a4r_A           29 SPLKVLMSHYEEAMGLSGHKLSFFFDGTKLSGKELPADLGLESGDLIEVWG   79 (79)
T ss_dssp             SCHHHHHHHHHHHHTCTTCCCEEEETTEECCSCCCHHHHTCCTTCEEEEEC
T ss_pred             ChHHHHHHHHHHHhCCCcccEEEEECCEEcCCCCCHHHcCCCCCCEEEEeC
Confidence            468999999999999999999999999999999999999999999999874

>2io0_B Small ubiquitin-related modifier 2 precursor; SUMO, SENP, ULP, complex, protein binding, hydrolase; 2.30A {Homo sapiens} SCOP: d.15.1.1

Probab=98.55  E-value=9.8e-08  Score=71.38  Aligned_cols=52  Identities=19%  Similarity=0.355  Sum_probs=49.2

Q ss_pred             CcHHHHHHHHHHHhCCCCCCceEEecCeecCCcchhhhcCCCCCCEEEEecc
Q 028093            1 MMIGDLKKAISEKTGLDPQEQKVLFRGKEKEDNEHLDVSGMKDKSKVLLLEE   52 (214)
Q Consensus         1 ~Tv~~LK~~l~e~tGipp~~QKLifkGK~L~d~~~L~~~GvkdgSki~Lv~~   52 (214)
                      +++..|+...+++.|+|++++||+|.|+.|.++.|..+||+.+|+.|.++..
T Consensus        26 t~l~kl~~~y~~~~gi~~~~~rf~FdG~~l~~~~Tp~dl~medgD~Idv~~~   77 (91)
T 2io0_B           26 TPLSKLMKAYCERQGLSMRQIRFRFDGQPINETDTPAQLEMEDEDTIDVFQQ   77 (91)
T ss_dssp             SCTHHHHHHHHHHTTCCSTTEEEEETTEECCTTCCTTTTTCCTTEEEEEEEC
T ss_pred             ChHHHHHHHHHHHhCCCcccEEEEECCEEcCCCCCHHHcCCCCCCEEEEEEe
Confidence            4688999999999999999999999999999999999999999999999864

>2d07_B Ubiquitin-like protein SMT3B; hydrolase; 2.10A {Homo sapiens} SCOP: d.15.1.1 PDB: 2rpq_A 2awt_A 2io3_B 2iyd_B 1u4a_A 2k1f_A

Probab=98.51  E-value=1.2e-07  Score=70.82  Aligned_cols=52  Identities=19%  Similarity=0.355  Sum_probs=49.1

Q ss_pred             CcHHHHHHHHHHHhCCCCCCceEEecCeecCCcchhhhcCCCCCCEEEEecc
Q 028093            1 MMIGDLKKAISEKTGLDPQEQKVLFRGKEKEDNEHLDVSGMKDKSKVLLLEE   52 (214)
Q Consensus         1 ~Tv~~LK~~l~e~tGipp~~QKLifkGK~L~d~~~L~~~GvkdgSki~Lv~~   52 (214)
                      +++..|+...+++.|++++++||+|.|+.|.++.|...||+.+|+.|+++..
T Consensus        38 t~l~kl~~~y~~~~gi~~~~~rf~fdG~~l~~~~Tp~dl~medgD~Idv~~~   89 (93)
T 2d07_B           38 TPLSKLMKAYCERQGLSMRQIRFRFDGQPINETDTPAQLEMEDEDTIDVFQQ   89 (93)
T ss_dssp             SCHHHHHHHHHHHHTCCGGGEEEEETTEECCTTCCTTTTTCCTTEEEEEEEC
T ss_pred             CHHHHHHHHHHHHhCCCccceEEEECCEEcCCCCCHHHcCCCCCCEEEEEee
Confidence            4689999999999999999999999999999999999999999999999864

>1wz0_A Ubiquitin-like protein SMT3B; SUMO-2, ubiquitin-like molecule, structural genomics, sentrin2, NPPFSA; NMR {Homo sapiens} SCOP: d.15.1.1

Probab=98.47  E-value=1.6e-07  Score=71.89  Aligned_cols=52  Identities=19%  Similarity=0.355  Sum_probs=49.2

Q ss_pred             CcHHHHHHHHHHHhCCCCCCceEEecCeecCCcchhhhcCCCCCCEEEEecc
Q 028093            1 MMIGDLKKAISEKTGLDPQEQKVLFRGKEKEDNEHLDVSGMKDKSKVLLLEE   52 (214)
Q Consensus         1 ~Tv~~LK~~l~e~tGipp~~QKLifkGK~L~d~~~L~~~GvkdgSki~Lv~~   52 (214)
                      ++|..|+...+++.|+++++|||+|.|+.|.++.|...|++.+|+.|+++-.
T Consensus        45 t~l~kL~~~y~ek~gi~~~~~rf~FdG~~l~~~~Tp~dl~medgD~Idv~~~   96 (104)
T 1wz0_A           45 TPLSKLMKAYCERQGLSMRQIRFRFDGQPINETDTPAQLEMEDEDTIDVFQQ   96 (104)
T ss_dssp             SCHHHHHHHHHHHHTCCTTTSCEESSSSBCCTTSCTTTTTCCTTEEEEECCC
T ss_pred             ChHHHHHHHHHHHhCCCcceEEEEECCEEcCCCCCHHHcCCCCCCEEEEEEe
Confidence            4689999999999999999999999999999999999999999999999864

>2d9d_A BAG family molecular chaperone regulator 5; triple helix bundle, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.41  E-value=1.2e-06  Score=65.17  Aligned_cols=72  Identities=19%  Similarity=0.154  Sum_probs=63.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCchhhhhHHHHHHHHHHhhcccccch--hhHHHHHHHHHHHHHHHHHHH
Q 028093           84 LQAIAGVRAEVDKLSERVASLEVAVNGGTKVPSEELDTSAELLMKELLKLDGIEAEG--EAKVQRKTEVRRVQKFHETLD  161 (214)
Q Consensus        84 ~~aI~~i~~evd~L~~~V~~~e~~v~~~~k~~eke~~~L~E~Lm~~LlkLD~Ie~~G--d~R~~RK~~VkrVQ~~le~LD  161 (214)
                      +..|..|+.++-.|.+++..+      .+.  .+.|..+-|.|-+.++.||.|+++|  .+|.+||.+|+.||.++.-||
T Consensus         9 i~~Ie~v~~r~r~l~~ell~~------~~~--s~~yl~~k~eLq~Li~~LDev~~~~NpcIReaRRrAV~EvQ~lit~lD   80 (89)
T 2d9d_A            9 ILKIEKVLKRMREIKNELLQA------QNP--SELYLSSKTELQGLIGQLDEVSLEKNPCIREARRRAVIEVQTLITYID   80 (89)
T ss_dssp             SHHHHHHHHHHHHHHHHHHHC------SCT--TTHHHHHHHHHHHHHHHHGGGCSCSSHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHh------cCc--hHHHhhhHHHHHHHHHHHhhcccCCChHHHHHHHHHHHHHHHHHHHHH
Confidence            456788888888898888887      332  7889999999999999999999999  899999999999999999999


Q ss_pred             HH
Q 028093          162 NL  163 (214)
Q Consensus       162 ~~  163 (214)
                      --
T Consensus        81 lk   82 (89)
T 2d9d_A           81 LK   82 (89)
T ss_dssp             HH
T ss_pred             HH
Confidence            43

>2k8h_A Small ubiquitin protein; SUMO, post-translational modifier, signaling protein; NMR {Trypanosoma brucei}

Probab=98.40  E-value=2.1e-07  Score=72.07  Aligned_cols=52  Identities=19%  Similarity=0.356  Sum_probs=49.5

Q ss_pred             CcHHHHHHHHHHHhCCCCCCceEEecCeecCCcchhhhcCCCCCCEEEEecc
Q 028093            1 MMIGDLKKAISEKTGLDPQEQKVLFRGKEKEDNEHLDVSGMKDKSKVLLLEE   52 (214)
Q Consensus         1 ~Tv~~LK~~l~e~tGipp~~QKLifkGK~L~d~~~L~~~GvkdgSki~Lv~~   52 (214)
                      ++|..|+...+++.|+++++|||+|.|+.|.++.|..+|++.+|++|.++..
T Consensus        47 t~l~kL~~ay~ek~gi~~~~~rfiFdG~~L~~~~Tp~dl~mEDgD~Idv~~~   98 (110)
T 2k8h_A           47 TALKKLIDTYCKKQGISRNSVRFLFDGTPIDETKTPEELGMEDDDVIDAMVE   98 (110)
T ss_dssp             SSHHHHHHHHHHHHTCCSSSCEEESSSCBCCSSSHHHHHHCSSEEEEEEECC
T ss_pred             ChHHHHHHHHHHHhCCCcccEEEEECCEEcCCCCCHHHcCCCCCCEEEEEEc
Confidence            4789999999999999999999999999999999999999999999999875

>2eke_C Ubiquitin-like protein SMT3; UBC9, SUMO binding motif, SBM, ligase/protein binding complex; 1.90A {Saccharomyces cerevisiae} SCOP: d.15.1.1

Probab=98.35  E-value=4.7e-07  Score=69.77  Aligned_cols=52  Identities=15%  Similarity=0.261  Sum_probs=48.8

Q ss_pred             CcHHHHHHHHHHHhCCCCCCceEEecCeecCCcchhhhcCCCCCCEEEEecc
Q 028093            1 MMIGDLKKAISEKTGLDPQEQKVLFRGKEKEDNEHLDVSGMKDKSKVLLLEE   52 (214)
Q Consensus         1 ~Tv~~LK~~l~e~tGipp~~QKLifkGK~L~d~~~L~~~GvkdgSki~Lv~~   52 (214)
                      ++|..|+...+++.|++++++||+|.|+.|.++.|..+||+.+|+.|.++..
T Consensus        51 t~l~kL~~ay~ek~gi~~~~~rF~FdG~rl~~~~Tp~dl~medgD~Idv~~~  102 (106)
T 2eke_C           51 TPLRRLMEAFAKRQGKEMDSLRFLYDGIRIQADQTPEDLDMEDNDIIEAHRE  102 (106)
T ss_dssp             SCTHHHHHHHHHHHTCCGGGEEEEETTEECCTTCCTTTTTCCTTEEEEEEEC
T ss_pred             CHHHHHHHHHHHHhCCCcccEEEEECCeEcCCCCCHHHcCCCCCCEEEEEee
Confidence            4688999999999999999999999999999999999999999999999864

>4efo_A Serine/threonine-protein kinase TBK1; ubiquitin like domain, transferase; 1.77A {Homo sapiens}

Probab=97.97  E-value=1.1e-05  Score=61.19  Aligned_cols=52  Identities=8%  Similarity=0.174  Sum_probs=41.0

Q ss_pred             CcHHHHHHHHHHHhCCCCCCceEEecCeec--CCcchhhhc-CCCCCCEEEEecc
Q 028093            1 MMIGDLKKAISEKTGLDPQEQKVLFRGKEK--EDNEHLDVS-GMKDKSKVLLLEE   52 (214)
Q Consensus         1 ~Tv~~LK~~l~e~tGipp~~QKLifkGK~L--~d~~~L~~~-GvkdgSki~Lv~~   52 (214)
                      .|+..||++|++.|||||++|+|||.||.+  +...+-..| +-...+-|+|+..
T Consensus        34 etv~~~ke~V~eqTgIp~~~Q~LL~eg~~l~l~p~~~a~~~p~Tt~~~Pl~L~s~   88 (94)
T 4efo_A           34 NTATIFHELVYKQTKIISSNQELIYEGRRLVLEPGRLAQHFPKTTEENPIFVVSL   88 (94)
T ss_dssp             CBHHHHHHHHHHHHCCCGGGEEEEETTEEECCCTTCBGGGSCCCBTTBCEEEEEC
T ss_pred             hHHHHHHHHHHHHhCCCHHHHHHHhCCCccccCCCCccccCCCCCCCCCEEEEec
Confidence            379999999999999999999999999986  555555555 3344467777754

>3kyd_D Small ubiquitin-related modifier 1; SUMO, thioester, adenylation, inhibitor, TETR intermediate, ligase, nucleus, phosphoprotein; HET: VMX; 2.61A {Homo sapiens} SCOP: d.15.1.1

Probab=97.91  E-value=1.8e-05  Score=61.89  Aligned_cols=51  Identities=20%  Similarity=0.395  Sum_probs=48.1

Q ss_pred             CcHHHHHHHHHHHhCCCCCCceEEecCeecCCcchhhhcCCCCCCEEEEec
Q 028093            1 MMIGDLKKAISEKTGLDPQEQKVLFRGKEKEDNEHLDVSGMKDKSKVLLLE   51 (214)
Q Consensus         1 ~Tv~~LK~~l~e~tGipp~~QKLifkGK~L~d~~~L~~~GvkdgSki~Lv~   51 (214)
                      +++.-|+...+++.|+++..+||+|.|+.+.++.|..++|+.||++|.++.
T Consensus        61 t~L~KLm~aY~er~Gl~~~~irFlFDG~rI~~~~TP~dL~MEDgD~IdV~~  111 (115)
T 3kyd_D           61 THLKKLKESYCQRQGVPMNSLRFLFEGQRIADNHTPKELGMEEEDVIEVYQ  111 (115)
T ss_dssp             SCTHHHHHHHHHHHTCCTTSEEEEETTEECCTTCCTTTTTCCTTCEEEEEE
T ss_pred             ChHHHHHHHHHHHhCCChhhEEEEECCeECCCCCCHHHcCCCCCCEEEEEe
Confidence            367889999999999999999999999999999999999999999999875

>3pge_A SUMO-modified proliferating cell nuclear antigen; DNA replication, DNA binding protein; 2.80A {Saccharomyces cerevisiae}

Probab=97.82  E-value=1.7e-05  Score=67.32  Aligned_cols=51  Identities=14%  Similarity=0.243  Sum_probs=48.5

Q ss_pred             CcHHHHHHHHHHHhCCCCCCceEEecCeecCCcchhhhcCCCCCCEEEEec
Q 028093            1 MMIGDLKKAISEKTGLDPQEQKVLFRGKEKEDNEHLDVSGMKDKSKVLLLE   51 (214)
Q Consensus         1 ~Tv~~LK~~l~e~tGipp~~QKLifkGK~L~d~~~L~~~GvkdgSki~Lv~   51 (214)
                      +++..|+...+++.|+++.++||+|.|+.+.++.|..++|+.+|++|.++-
T Consensus        49 t~l~kL~~ay~er~Gi~~~~~RF~FdG~rI~~~~TP~dL~MEdgD~Idv~~   99 (200)
T 3pge_A           49 TPLRRLMEAFAKRQGKEMDSLRFLYDGIRIQADQTPEDLDMEDNDIIEAHR   99 (200)
T ss_dssp             SCTHHHHHHHHHHHSSCGGGEEEEETTEECCTTCCTTTTTCCTTEEEEEEE
T ss_pred             CHHHHHHHHHHHHhCCChhhEEEEECCEEcCCCCCHHHcCCCCCCEEEEEe
Confidence            468899999999999999999999999999999999999999999999984

>2pjh_A Protein NPL4, nuclear protein localization protein 4 homolog; UFD1, NPL4, AAA, protein binding, transport protein; NMR {Mus musculus}

Probab=97.55  E-value=6.8e-05  Score=54.44  Aligned_cols=50  Identities=12%  Similarity=0.219  Sum_probs=41.2

Q ss_pred             CcHHHHHHHHHHHhCCCCCCceEEecCee---c--CCcchhhhcCCCCCCEEEEe
Q 028093            1 MMIGDLKKAISEKTGLDPQEQKVLFRGKE---K--EDNEHLDVSGMKDKSKVLLL   50 (214)
Q Consensus         1 ~Tv~~LK~~l~e~tGipp~~QKLifkGK~---L--~d~~~L~~~GvkdgSki~Lv   50 (214)
                      +||++|+..|++.++++++.|.|.+.-..   +  .++.+|+.+||++|+.|+|.
T Consensus        24 ~t~~~L~~~I~~~~~i~~~~~~l~~~~~p~~~l~~~~~~~l~~lgl~hGd~l~l~   78 (80)
T 2pjh_A           24 ETAATFLKKVAKEFGFQNNGFSVYINRNKTGEITASSSKSLHLLKIKHGDLLFLF   78 (80)
T ss_dssp             CCHHHHHHHHHHHTCCCTTTCCCCCSCCGGGGSSSCCCCTTTTTCCCTTCCEEC-
T ss_pred             ChHHHHHHHHHHHcCCCCCcceEEecCCCCCcccCCCCCCHHHcCCCCCCEEEEe
Confidence            58999999999999999988877554333   3  37889999999999999874

>3tix_A Ubiquitin-like protein SMT3, RNA-induced transcri silencing complex protein TAS3; PIN, rossmann fold, SPOC, alpha-helical hairpin, heterochrom silencing, RITS, RNAI, argonaute; 2.90A {Saccharomyces cerevisiae}

Probab=97.54  E-value=7.2e-05  Score=63.75  Aligned_cols=52  Identities=17%  Similarity=0.265  Sum_probs=48.9

Q ss_pred             CcHHHHHHHHHHHhCCCCCCceEEecCeecCCcchhhhcCCCCCCEEEEecc
Q 028093            1 MMIGDLKKAISEKTGLDPQEQKVLFRGKEKEDNEHLDVSGMKDKSKVLLLEE   52 (214)
Q Consensus         1 ~Tv~~LK~~l~e~tGipp~~QKLifkGK~L~d~~~L~~~GvkdgSki~Lv~~   52 (214)
                      +++..|+...+++.|+++..+||+|.|+.+.++.|..++|+.||++|.++..
T Consensus        77 TpL~KLmeAYcERqGL~~~sIRFLFDGqRI~~ddTPeDLdMEDGDtIDV~le  128 (207)
T 3tix_A           77 TPLRRLMEAFAKRQGKEMDSLTFLYDGIEIQADQTPEDLDMEDNDIIEAHRE  128 (207)
T ss_dssp             SCTHHHHHHHHHHTTCCGGGSCEEETTEECCSSCCTTTTTCCTTEEEEECCC
T ss_pred             ChHHHHHHHHHHHhCCCcccEEEEECCeecCCCCCHHHcCCCCCCEEEEEEe
Confidence            4678899999999999999999999999999999999999999999999864

>3goe_A DNA repair protein RAD60; SUMO-like domain, sumoylation, SUMO, genome stability, DNA damage, DNA recombination, nucleus; HET: DNA; 0.97A {Schizosaccharomyces pombe} PDB: 3rcz_A*

Probab=97.12  E-value=0.0014  Score=48.35  Aligned_cols=51  Identities=16%  Similarity=0.311  Sum_probs=47.5

Q ss_pred             CcHHHHHHHHHHHhCCCCC-CceEEecCeecCCcchhhhcCCCCCCEEEEec
Q 028093            1 MMIGDLKKAISEKTGLDPQ-EQKVLFRGKEKEDNEHLDVSGMKDKSKVLLLE   51 (214)
Q Consensus         1 ~Tv~~LK~~l~e~tGipp~-~QKLifkGK~L~d~~~L~~~GvkdgSki~Lv~   51 (214)
                      +||..|-+.-+.+-|||++ ..+|+|-|-.|+.+.++.+|++.||+-|-+|-
T Consensus        30 t~v~kLi~ayc~~~~I~~~~~IrllFDGdRLdp~~tp~DlemeD~D~IDvmL   81 (82)
T 3goe_A           30 FTVKDLIKRYCTEVKISFHERIRLEFEGEWLDPNDQVQSTELEDEDQVSVVL   81 (82)
T ss_dssp             SBHHHHHHHHHHHHTCCCCTTCEEEETTEECCTTSBGGGSSCCTTCEEEEEC
T ss_pred             CCHHHHHHHHHHHcCCCcCceEEEEEcCcccCccCChhhhCCcCCceeeeee
Confidence            4788999999999999999 99999999999999999999999999998774

>3v7o_A Minor nucleoprotein VP30; ssgcid, seattle structural genomics center for infectious disease, SMT, transcription; 2.25A {Reston ebolavirus}

Probab=97.12  E-value=7.1e-05  Score=64.55  Aligned_cols=51  Identities=16%  Similarity=0.270  Sum_probs=0.0

Q ss_pred             cHHHHHHHHHHHhCCCCCCceEEecCeecCCcchhhhcCCCCCCEEEEecc
Q 028093            2 MIGDLKKAISEKTGLDPQEQKVLFRGKEKEDNEHLDVSGMKDKSKVLLLEE   52 (214)
Q Consensus         2 Tv~~LK~~l~e~tGipp~~QKLifkGK~L~d~~~L~~~GvkdgSki~Lv~~   52 (214)
                      .+..|+...+++.|++++.+|++|.|+.+.++.|..++|+.||++|.++-.
T Consensus        42 pL~KLM~AYcERqGLs~~siRFLFDGqRI~dddTPadL~MEDGDtIDV~le   92 (227)
T 3v7o_A           42 PLRRLMEAFAKRQGKEMDSLRFLYDGIRIQADQTPEDLDMEDNDIIEAHRE   92 (227)
T ss_dssp             ---------------------------------------------------
T ss_pred             hHHHHHHHHHHHhCCCccceEEEECCEecCCCCCHHHcCCCCCCEEEEEec
Confidence            577889999999999999999999999999999999999999999999853

>2jxx_A Nfatc2-interacting protein; nuclear factor of activated T-cells, cytoplasmic 2- interacting protein, ubiquitin like homologue; NMR {Homo sapiens}

Probab=96.91  E-value=0.0018  Score=48.93  Aligned_cols=51  Identities=18%  Similarity=0.214  Sum_probs=46.7

Q ss_pred             CcHHHHHHHHHHHhCCCCCCceEEecCeecCCcchhhhcCCCCCCEEEEec
Q 028093            1 MMIGDLKKAISEKTGLDPQEQKVLFRGKEKEDNEHLDVSGMKDKSKVLLLE   51 (214)
Q Consensus         1 ~Tv~~LK~~l~e~tGipp~~QKLifkGK~L~d~~~L~~~GvkdgSki~Lv~   51 (214)
                      +++.-|....+++.|++++..|++|.|..+.++.|..++|+.||+.|-+++
T Consensus        47 t~l~kLm~aY~~~~g~~~~~vrF~FDG~rI~~~~TP~dLdMEDgD~IDv~~   97 (97)
T 2jxx_A           47 SPLKTLMSHYEEAMGLSGRKLSFFFDGTKLSGRELPADLGMESGDLIEVWG   97 (97)
T ss_dssp             SCHHHHHHHHHHHTTCSSSCCEEEETTEECCSCSCHHHHTCCTTEEEEEEC
T ss_pred             ChHHHHHHHHHHHHCCCcccEEEEECCEEcCCCCCHHHcCCCCCCEEEEeC
Confidence            357888999999999999999999999999999999999999999998763

>3uf8_A Ubiquitin-like protein SMT3, peptidyl-prolyl CIS- isomerase; ssgcid, seattle structural genomics center for in disease; HET: FK5; 1.50A {Burkholderia pseudomallei} PDB: 4ggq_C* 3vaw_A* 3uqa_A* 4g50_A* 4fn2_A* 3uqb_A* 4giv_A* 1euv_B 3v60_A 3v61_A 3v62_A*

Probab=96.42  E-value=0.0035  Score=52.64  Aligned_cols=52  Identities=15%  Similarity=0.261  Sum_probs=48.4

Q ss_pred             CcHHHHHHHHHHHhCCCCCCceEEecCeecCCcchhhhcCCCCCCEEEEecc
Q 028093            1 MMIGDLKKAISEKTGLDPQEQKVLFRGKEKEDNEHLDVSGMKDKSKVLLLEE   52 (214)
Q Consensus         1 ~Tv~~LK~~l~e~tGipp~~QKLifkGK~L~d~~~L~~~GvkdgSki~Lv~~   52 (214)
                      +++.-|+...+++.|++++++|++|.|+.+.++.+-..+++.|++.|.+...
T Consensus        41 ~~l~kl~~~y~~~~g~~~~~~~f~fdG~~i~~~~Tpk~L~~ed~d~I~~~~e   92 (209)
T 3uf8_A           41 TPLRRLMEAFAKRQGKEMDSLRFLYDGIRIQADQTPEDLDMEDNDIIEAHRE   92 (209)
T ss_dssp             SCTHHHHHHHHHHHTCCGGGCEEEETTEECCTTCCTTTTTCCTTEEEEEECS
T ss_pred             CHHHHHHHHHHHhhCCChheEEEEECCEeccCCCChHHhhhcccccchhhcc
Confidence            3578899999999999999999999999999999999999999999998854

>3ix6_A TS, tsase, thymidylate synthase; niaid, ssgcid, seattle structural center for infectious DISE brucellosis, orchitis, epididymitis, mastitis; 2.20A {Brucella melitensis}

Probab=96.17  E-value=0.00083  Score=61.56  Aligned_cols=51  Identities=16%  Similarity=0.270  Sum_probs=0.0

Q ss_pred             cHHHHHHHHHHHhCCCCCCceEEecCeecCCcchhhhcCCCCCCEEEEecc
Q 028093            2 MIGDLKKAISEKTGLDPQEQKVLFRGKEKEDNEHLDVSGMKDKSKVLLLEE   52 (214)
Q Consensus         2 Tv~~LK~~l~e~tGipp~~QKLifkGK~L~d~~~L~~~GvkdgSki~Lv~~   52 (214)
                      ++..|+...+++.|++++.+|++|.|+.+.++.|..++|++||+.|.++..
T Consensus        42 ~l~kLm~aY~~r~G~~~~~~rFlFdG~rI~~~~TP~~L~MEDgD~Idv~~~   92 (360)
T 3ix6_A           42 PLRRLMEAFAKRQGKEMDSLRFLYDGIRIQADQTPEDLDMEDNDIIEAHRE   92 (360)
T ss_dssp             ---------------------------------------------------
T ss_pred             hHHHHHHHHHHHhCCCcceEEEEECCeECCCCCChHHcCCCccchhhhhhc
Confidence            577899999999999999999999999999999999999999999999864

>4da1_A Protein phosphatase 1K, mitochondrial; metal-ION-assisted catalysis, dehydrogenase phosphatase, hydrolase; 2.38A {Homo sapiens} PDB: 3qht_A 1l2n_A

Probab=95.93  E-value=0.0013  Score=59.55  Aligned_cols=51  Identities=16%  Similarity=0.267  Sum_probs=0.0

Q ss_pred             cHHHHHHHHHHHhCCCCCCceEEecCeecCCcchhhhcCCCCCCEEEEecc
Q 028093            2 MIGDLKKAISEKTGLDPQEQKVLFRGKEKEDNEHLDVSGMKDKSKVLLLEE   52 (214)
Q Consensus         2 Tv~~LK~~l~e~tGipp~~QKLifkGK~L~d~~~L~~~GvkdgSki~Lv~~   52 (214)
                      ++.-|+...+++.|+++.++|++|.|+.+.++.|-.++|+.+|+.|.++-+
T Consensus        51 ~~~~l~~~y~~~~g~~~~~~~f~f~G~~i~~~~Tp~~l~med~d~i~~~~~  101 (389)
T 4da1_A           51 PLRRLMEAFAKRQGKEMDSLRFLYDGIRIQADQAPEDLDMEDNDIIEAHRE  101 (389)
T ss_dssp             ---------------------------------------------------
T ss_pred             hHHHHHHHHHHHhCCCcceEEEEECCEEcCCCCCHHHcCCCCCCEeeeeec
Confidence            577899999999999999999999999999999999999999999998853

>2l76_A Nfatc2-interacting protein; ubiquitin-like domain, structural genomics, PSI-biology, Pro structure initiative; NMR {Homo sapiens}

Probab=95.70  E-value=0.019  Score=43.45  Aligned_cols=50  Identities=10%  Similarity=0.109  Sum_probs=45.9

Q ss_pred             HHHHHHHHHHHhCCCCCCceEEecCeecCCcchhhhcCCCCCCEEEEecc
Q 028093            3 IGDLKKAISEKTGLDPQEQKVLFRGKEKEDNEHLDVSGMKDKSKVLLLEE   52 (214)
Q Consensus         3 v~~LK~~l~e~tGipp~~QKLifkGK~L~d~~~L~~~GvkdgSki~Lv~~   52 (214)
                      +.-|....+++.|+++...|++|.|..+.++.|-..+|+.+|+.|-++.-
T Consensus        43 l~KL~~aYc~r~gv~~~sirFlfDG~rI~~~~TP~~L~meD~DiID~~~~   92 (95)
T 2l76_A           43 LQSVVDHMATHLGVSPSRILLLFGETELSPTATPRTLKLGVADIIDCVVL   92 (95)
T ss_dssp             THHHHHHHHHHHTSCGGGEEEEETTEECCTTSCHHHHTCCSSCEEEEEEC
T ss_pred             HHHHHHHHHhhcCCChhhEEEEECCcCCCCCCCHhHcCCCCCCEEEEEEe
Confidence            56788889999999999999999999999999999999999999988754

>2bps_A YUKD protein; ubiquitin-like protein, ubiquitin; 2.7A {Bacillus subtilis}

Probab=95.18  E-value=0.018  Score=42.20  Aligned_cols=49  Identities=8%  Similarity=0.085  Sum_probs=43.3

Q ss_pred             CcHHHHHHHHHHHhCCCC-----CCceEEecCeecCCcchhhhcCCCCCCEEEE
Q 028093            1 MMIGDLKKAISEKTGLDP-----QEQKVLFRGKEKEDNEHLDVSGMKDKSKVLL   49 (214)
Q Consensus         1 ~Tv~~LK~~l~e~tGipp-----~~QKLifkGK~L~d~~~L~~~GvkdgSki~L   49 (214)
                      .|+..|...+.+..+++.     ...|+.-||..|.++..|..|||.+|+.|-+
T Consensus        27 ~tvK~Li~~l~ea~~l~~~~~~~~~irv~NK~~~L~~~~~L~d~~ItnGD~Lei   80 (81)
T 2bps_A           27 HPVKKVIDIAWQAQSVSMPPREGHWIRVVNKDKVFSGECKLSDCGITNGDRLEI   80 (81)
T ss_dssp             SBTTHHHHHHHHHSCCCSCCCTTCEEEEGGGTEEEETTSBTGGGTCCTTCEEEE
T ss_pred             hhHHHHHHHHHHHhCCCcCCCCCCEEEEecCCEEEcCCCEEeeCCcCCCCEEEE
Confidence            378889999999999985     3468999999999999999999999998865

>2al3_A TUG long isoform; TUG UBL1 insulin, endocytosis/exocytosis complex; NMR {Mus musculus} SCOP: d.15.1.2

Probab=95.14  E-value=0.049  Score=40.80  Aligned_cols=55  Identities=7%  Similarity=0.179  Sum_probs=50.0

Q ss_pred             CcHHHHHHHHHHHhCCCCCCceEEecCeecCCcchhhhcCCCCCCEEEEeccccc
Q 028093            1 MMIGDLKKAISEKTGLDPQEQKVLFRGKEKEDNEHLDVSGMKDKSKVLLLEELTN   55 (214)
Q Consensus         1 ~Tv~~LK~~l~e~tGipp~~QKLifkGK~L~d~~~L~~~GvkdgSki~Lv~~p~s   55 (214)
                      +|+-++=+..+++.|+++++-.|.|++|.+|-..+++-.||-+|+++-|+....+
T Consensus        30 t~L~~VL~eaC~K~gl~~~~~~Lkh~~k~lDLSlpfRlsgLpnnAkLELv~~s~s   84 (90)
T 2al3_A           30 TVLLQVLEDTCRRQDFNPSEYDLKFQRTVLDLSLQWRFANLPNNAKLEMVPVSRS   84 (90)
T ss_dssp             SBHHHHHHHHHHHTTCCGGGCEEEETTEEESSSCBHHHHCCCSSCEEEEECSSSC
T ss_pred             CCHHHHHHHHHHHhCCChhhCeEEeCCEeccccceeEecCCCCCCEEEEEEccCC
Confidence            4678888899999999999999999999999999999999999999999986444

>2kc2_A Talin-1, F1; FERM, adhesion, cell membrane, cell projection, cytoplasm, cytoskeleton, membrane, phosphoprotein, structural protein; NMR {Mus musculus}

Probab=95.01  E-value=0.026  Score=44.67  Aligned_cols=51  Identities=18%  Similarity=0.278  Sum_probs=42.0

Q ss_pred             CcHHHHHHHHHHHhCCCCC-------------------------------------CceEEe--cCeecCCcchhhhcCC
Q 028093            1 MMIGDLKKAISEKTGLDPQ-------------------------------------EQKVLF--RGKEKEDNEHLDVSGM   41 (214)
Q Consensus         1 ~Tv~~LK~~l~e~tGipp~-------------------------------------~QKLif--kGK~L~d~~~L~~~Gv   41 (214)
                      .||++++..|+.+.||++.                                     .|||-.  .+..|++..+|.++||
T Consensus        32 ~~V~~lv~~Ic~kigI~n~~ey~L~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~k~kL~~dd~~~WLD~srtL~EQGI  111 (128)
T 2kc2_A           32 KTVTDMLMTICARIGITNHDEYSLVRELMEEKKDEGTGTLRKDKTLLRDEKKMEKLKQKLHTDDELNWLDHGRTLREQGV  111 (128)
T ss_dssp             SSHHHHHHHHHHHHTCCCCSSEEEEEECCCCCCCCCSSCCSSSSSCSCCSCCSCSSCCSCCCSSSEEEECSSSCHHHHTC
T ss_pred             cCHHHHHHHHHHHhCCCCcccccccccccccccccCchhhccccccccchhHHHHHHHHhcccCCCCcccCCCcHHHcCC
Confidence            4799999999999999955                                     456543  3467899999999999


Q ss_pred             CCCCEEEEec
Q 028093           42 KDKSKVLLLE   51 (214)
Q Consensus        42 kdgSki~Lv~   51 (214)
                      .++++|+|--
T Consensus       112 ~e~~tllLRr  121 (128)
T 2kc2_A          112 EEHETLLLRR  121 (128)
T ss_dssp             CTTSEEEEEE
T ss_pred             CCCCEEEEEE
Confidence            9999988743

>3qx1_A FAS-associated factor 1; UBX, protein binding, P97 binding; 1.60A {Homo sapiens} PDB: 3qwz_B* 3qc8_B 3qca_A 3qq8_B 3r3m_B 1h8c_A

Probab=91.72  E-value=0.3  Score=34.78  Aligned_cols=50  Identities=16%  Similarity=0.185  Sum_probs=41.6

Q ss_pred             CcHHHHHHHHHHHhCCCCCCceEE--ecCeec---CCcchhhhcCCCCCCEEEEec
Q 028093            1 MMIGDLKKAISEKTGLDPQEQKVL--FRGKEK---EDNEHLDVSGMKDKSKVLLLE   51 (214)
Q Consensus         1 ~Tv~~LK~~l~e~tGipp~~QKLi--fkGK~L---~d~~~L~~~GvkdgSki~Lv~   51 (214)
                      .|+.+|...|.. .|.++...+|+  |-.|.+   +.+.+|.++|+.+++.|++-+
T Consensus        28 ~tl~~v~~fv~~-~~~~~~~f~L~t~fPrk~l~~~d~~~TL~e~gL~p~a~L~ve~   82 (84)
T 3qx1_A           28 NKLQIVFDFVAS-KGFPWDEYKLLSTFPRRDVTQLDPNKSLLEVKLFPQETLFLEA   82 (84)
T ss_dssp             SBHHHHHHHHHH-TTCCTTTEEEECSSSCCBGGGSCTTSBTTTTTCCSEEEEEEEE
T ss_pred             CCHHHHHHHHHH-cCCCCCCeEEEeCCCCCCCcCCCCCCCHHHCCCCCCCEEEEEe
Confidence            378999999987 78888889998  557877   467899999999998888754

>4a3p_A Ubiquitin carboxyl-terminal hydrolase 15; 1.40A {Homo sapiens} PDB: 4a3o_A 3pv1_A 3ppa_A* 3t9l_A 3lmn_A

Probab=89.45  E-value=0.59  Score=39.08  Aligned_cols=51  Identities=10%  Similarity=0.253  Sum_probs=40.3

Q ss_pred             CcHHHHHHHHHHHhCCCCC-CceEE--e-cCe--ecCC-cchhhhcCCCCCCEEEEec
Q 028093            1 MMIGDLKKAISEKTGLDPQ-EQKVL--F-RGK--EKED-NEHLDVSGMKDKSKVLLLE   51 (214)
Q Consensus         1 ~Tv~~LK~~l~e~tGipp~-~QKLi--f-kGK--~L~d-~~~L~~~GvkdgSki~Lv~   51 (214)
                      .||.+|++.+...+|||++ ..||-  | .++  .|++ +.+|.++++.+|..|.|=.
T Consensus       150 ~ti~~l~~~~~~~~~i~~~~~~RlW~~~~~~~~~~L~~~~~tl~~~~l~~~Q~illE~  207 (217)
T 4a3p_A          150 DTIDTIEKEIRKIFSIPDEKETRLWNKYMSNTFEPLNKPDSTIQDAGLYQGQVLVIEQ  207 (217)
T ss_dssp             SBHHHHHHHHHHHTTCCTTSCEEEEEEEETTEEEECCCTTSBHHHHTCCTTCEEEEEE
T ss_pred             chHHHHHHHHHHHhCCCCCCceEEEEecCCCCeeecCCCCCCHHHhCCCCCCEEEEEE
Confidence            4899999999999999997 68984  3 222  2444 6799999999998887633

>3jyu_A Ubiquitin carboxyl-terminal hydrolase; domain in ubiquitin-specific peptidases (DUSP), proto- oncogene, ubiquitin-fold, UBL, protease, thioesterase; HET: 1PS; 2.37A {Mus musculus}

Probab=88.99  E-value=0.73  Score=38.94  Aligned_cols=51  Identities=8%  Similarity=0.137  Sum_probs=40.6

Q ss_pred             CcHHHHHHHHHHHhCCCCC-CceEEe-c----CeecC-CcchhhhcCCCCCCEEEEec
Q 028093            1 MMIGDLKKAISEKTGLDPQ-EQKVLF-R----GKEKE-DNEHLDVSGMKDKSKVLLLE   51 (214)
Q Consensus         1 ~Tv~~LK~~l~e~tGipp~-~QKLif-k----GK~L~-d~~~L~~~GvkdgSki~Lv~   51 (214)
                      .||.+|++.+....+|+++ ..||-+ .    ...|. .+.+|.++++.+|..|.|=.
T Consensus       162 ~ti~~l~~~~~~~~~i~~~~~~RLW~~~~~~~~~~L~~~~~tl~d~~L~~~Q~illE~  219 (231)
T 3jyu_A          162 DTIATIEKEMRKLFNIPAERETRLWNKYMSNTYEQLSKLDNTIQDAGLYQGQVLVIEP  219 (231)
T ss_dssp             CBHHHHHHHHHHHTTCCTTSCEEEEECSSSSSCEECCCTTSBTTTTTCCTTEEEEEEE
T ss_pred             CcHHHHHHHHHHHhCCCCCCeEEEEEecCCCCHhhhcCCCCCHHHhCCCCCCEEEEEE
Confidence            4899999999999999997 689954 2    22354 56899999999997776633

>2kvr_A Ubiquitin carboxyl-terminal hydrolase 7; USP7, ubiquitin-like domain, UBL, ubiquitin specific protease, HOST-virus interaction, nucleus, protease; NMR {Homo sapiens}

Probab=85.71  E-value=0.44  Score=37.33  Aligned_cols=26  Identities=8%  Similarity=0.245  Sum_probs=23.7

Q ss_pred             CcHHHHHHHHHHHhCCCCCCceEEec
Q 028093            1 MMIGDLKKAISEKTGLDPQEQKVLFR   26 (214)
Q Consensus         1 ~Tv~~LK~~l~e~tGipp~~QKLifk   26 (214)
                      +||.+|+..|++..|+|+++|||-+=
T Consensus        66 ~~~~~~~~~va~~lg~~~~~~RlW~~   91 (130)
T 2kvr_A           66 SSLAEFVQSLSQTMGFPQDQIRLWPM   91 (130)
T ss_dssp             SBHHHHHHHHHHHHCCCGGGCEEEEC
T ss_pred             CcHHHHHHHHHHHhCCCcccEEEEEe
Confidence            58999999999999999999999643

>3onh_A Ubiquitin-activating enzyme E1-like; ligase, SUMO conjugation, UBC9; 1.60A {Saccharomyces cerevisiae} PDB: 3ong_A

Probab=80.76  E-value=3.6  Score=32.48  Aligned_cols=51  Identities=27%  Similarity=0.386  Sum_probs=38.2

Q ss_pred             CcHHHHHHHHHHHhCCCC-------CCceEEecCeecCC--cchhhhcCCCCCCEEEEecc
Q 028093            1 MMIGDLKKAISEKTGLDP-------QEQKVLFRGKEKED--NEHLDVSGMKDKSKVLLLEE   52 (214)
Q Consensus         1 ~Tv~~LK~~l~e~tGipp-------~~QKLifkGK~L~d--~~~L~~~GvkdgSki~Lv~~   52 (214)
                      +|+++|-+.|....|.+.       .++||||-= -.+|  +.+|+.+||++||.|.++..
T Consensus        20 ~TL~dLV~~l~~~~gy~~eiSV~~~~~~rLLyD~-DfDDnl~k~L~dLgv~~gsfLtv~DE   79 (127)
T 3onh_A           20 MKLSDFVVLIREKYSYPQDISLLDASNQRLLFDY-DFEDLNDRTLSEINLGNGSIILFSDE   79 (127)
T ss_dssp             CBHHHHHHHHHHHHTCCSSEEEEETTTTEEEEET-TBCTTTTSBTTTTTCCTTCEEEEEES
T ss_pred             cCHHHHHHHHHHhcCCCCcEEEEecCCCCeEeCC-CccccccCcHHHcCcCCCcEEEEEcc
Confidence            478898888888888763       246666652 2333  67899999999999999875

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	214
d1ugoa_	99	a.7.7.1 (A:) BAG-family molecular chaperone regula	9e-14
d1uk5a_	111	a.7.7.1 (A:) BAG-family molecular chaperone regula	7e-13
d1m7ka_	81	a.7.7.1 (A:) Silencer of death domains, Sodd (Bag4	6e-12
d1wxva1	81	d.15.1.1 (A:7-87) Bag-family molecular chaperone r	2e-06
d2bwfa1	73	d.15.1.1 (A:2-74) DSK2 {Baker's yeast (Saccharomyc	3e-06
d1zkha1	86	d.15.1.1 (A:1-86) Splicing factor 3 subunit 1, C-t	1e-04
d1euvb_	79	d.15.1.1 (B:) SUMO-1 (smt3 homologue) {Baker's yea	5e-04
d2faza1	76	d.15.1.1 (A:1-76) Ubiquitin-like PHD and RING fing	6e-04
d1v5ta_	90	d.15.1.1 (A:) 8430435i17rik protein {Mouse (Mus mu	8e-04
d1oqya4	77	d.15.1.1 (A:1-77) Ubiquitin-like domain of Rad23 h	0.001
d1bt0a_	73	d.15.1.1 (A:) Rub1 {Mouse-ear cress (Arabidopsis t	0.001
d1wx9a1	73	d.15.1.1 (A:8-80) Large proline-rich protein BAT3	0.002

>d1ugoa_ a.7.7.1 (A:) BAG-family molecular chaperone regulator-5, BAG-5 {Mouse (Mus musculus) [TaxId: 10090]} Length = 99

class: All alpha proteins
fold: Spectrin repeat-like
superfamily: BAG domain
family: BAG domain
domain: BAG-family molecular chaperone regulator-5, BAG-5
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 62.5 bits (152), Expect = 9e-14
 Identities = 13/82 (15%), Positives = 34/82 (41%), Gaps = 8/82 (9%)

Query: 82  KALQAIAGVRAEVDKLSERVASLEVAVNGGTKVPSEELDTSAELLMKELLKLDGIEAEGE 141
            ++  +  ++ EV  +  +V               +       +L K+L ++D ++ EG+
Sbjct: 15  PSISRLQEIQREVKAIEPQVVGFS------GLSDDKNYKRLERILTKQLFEIDSVDTEGK 68

Query: 142 AKVQ--RKTEVRRVQKFHETLD 161
             +Q  RK   +  ++  + L+
Sbjct: 69  GDIQQARKRAAQETERLLKELE 90

>d1uk5a_ a.7.7.1 (A:) BAG-family molecular chaperone regulator-3 {Mouse (Mus musculus) [TaxId: 10090]} Length = 111

class: All alpha proteins
fold: Spectrin repeat-like
superfamily: BAG domain
family: BAG domain
domain: BAG-family molecular chaperone regulator-3
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 60.6 bits (147), Expect = 7e-13
 Identities = 28/79 (35%), Positives = 41/79 (51%), Gaps = 3/79 (3%)

Query: 93  EVDKLSERVASLEVAVNG-GTKVPSEELDTSAELLMKELLKLDGIEAEGEAKV--QRKTE 149
           +V+ + E+V  LE AV+    K   ++     E L KELL LD ++ EG A V   R+  
Sbjct: 31  KVEAILEKVQGLEQAVDSFEGKKTDKKYLMIEEYLTKELLALDSVDPEGRADVRQARRDG 90

Query: 150 VRRVQKFHETLDNLKAINS 168
           VR+VQ   E L+   +  S
Sbjct: 91  VRKVQTILEKLEQKASGPS 109

>d1m7ka_ a.7.7.1 (A:) Silencer of death domains, Sodd (Bag4) {Human (Homo sapiens) [TaxId: 9606]} Length = 81

class: All alpha proteins
fold: Spectrin repeat-like
superfamily: BAG domain
family: BAG domain
domain: Silencer of death domains, Sodd (Bag4)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 57.1 bits (138), Expect = 6e-12
 Identities = 23/83 (27%), Positives = 36/83 (43%), Gaps = 8/83 (9%)

Query: 82  KALQAIAGVRAEVDKLSERVASLEVAVNGGTKVPSEELDTSAELLMKELLKLDGIEAEGE 141
            +++ I  V  +V  L + V           K   +      E+L KELL+LD +E  G+
Sbjct: 3   PSIKKIIHVLEKVQYLEQEVEEFV------GKKTDKAYWLLEEMLTKELLELDSVETGGQ 56

Query: 142 AKV--QRKTEVRRVQKFHETLDN 162
             V   RK  V ++Q   E L+ 
Sbjct: 57  DSVRQARKEAVCKIQAILEKLEK 79

>d1wxva1 d.15.1.1 (A:7-87) Bag-family molecular chaperone regulator-1 {Human (Homo sapiens) [TaxId: 9606]} Length = 81

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Bag-family molecular chaperone regulator-1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.2 bits (99), Expect = 2e-06
 Identities = 16/51 (31%), Positives = 29/51 (56%), Gaps = 1/51 (1%)

Query: 1  MMIGDLKKAISEKTGLDPQEQKVLFRGKE-KEDNEHLDVSGMKDKSKVLLL 50
           ++ DL + + E  G+    QK++F+GK  KE    L   G++D  +V+L+
Sbjct: 26 PVVQDLAQVVEEVIGVPQSFQKLIFKGKSLKEMETPLSALGIQDGCRVMLI 76

>d2bwfa1 d.15.1.1 (A:2-74) DSK2 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 73

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: DSK2
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 41.3 bits (97), Expect = 3e-06
 Identities = 11/47 (23%), Positives = 27/47 (57%)

Query: 3  IGDLKKAISEKTGLDPQEQKVLFRGKEKEDNEHLDVSGMKDKSKVLL 49
          +   K+AI++  G+    Q++++ GK  +D++ ++   ++D   V L
Sbjct: 23 VLQFKEAINKANGIPVANQRLIYSGKILKDDQTVESYHIQDGHSVHL 69

>d1zkha1 d.15.1.1 (A:1-86) Splicing factor 3 subunit 1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 86

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Splicing factor 3 subunit 1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.2 bits (86), Expect = 1e-04
 Identities = 12/47 (25%), Positives = 23/47 (48%)

Query: 3  IGDLKKAISEKTGLDPQEQKVLFRGKEKEDNEHLDVSGMKDKSKVLL 49
          +  +K  I E TG+   +QK+ + G   +D+  L    M + + + L
Sbjct: 34 VSVIKVKIHEATGMPAGKQKLQYEGIFIKDSNSLAYYNMANGAVIHL 80

>d1euvb_ d.15.1.1 (B:) SUMO-1 (smt3 homologue) {Baker's yeast (Saccharomyces cerevisiae), smt3 [TaxId: 4932]} Length = 79

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: SUMO-1 (smt3 homologue)
species: Baker's yeast (Saccharomyces cerevisiae), smt3 [TaxId: 4932]

 Score = 35.6 bits (82), Expect = 5e-04
 Identities = 8/52 (15%), Positives = 22/52 (42%)

Query: 3  IGDLKKAISEKTGLDPQEQKVLFRGKEKEDNEHLDVSGMKDKSKVLLLEELT 54
          +  L +A +++ G +    + L+ G   + ++  +   M+D   +    E  
Sbjct: 26 LRRLMEAFAKRQGKEMDSLRFLYDGIRIQADQTPEDLDMEDNDIIEAHREQI 77

>d2faza1 d.15.1.1 (A:1-76) Ubiquitin-like PHD and RING finger domain-containing protein 1 {Human (Homo sapiens) [TaxId: 9606]} Length = 76

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Ubiquitin-like PHD and RING finger domain-containing protein 1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 35.3 bits (81), Expect = 6e-04
 Identities = 13/52 (25%), Positives = 27/52 (51%)

Query: 3  IGDLKKAISEKTGLDPQEQKVLFRGKEKEDNEHLDVSGMKDKSKVLLLEELT 54
          + +L++ I E   ++P  Q++ +RGK+ ED   L    ++    + LL   +
Sbjct: 25 VEELRRKIQELFHVEPGLQRLFYRGKQMEDGHTLFDYEVRLNDTIQLLVRQS 76

>d1v5ta_ d.15.1.1 (A:) 8430435i17rik protein {Mouse (Mus musculus) [TaxId: 10090]} Length = 90

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: 8430435i17rik protein
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 35.4 bits (81), Expect = 8e-04
 Identities = 15/51 (29%), Positives = 30/51 (58%), Gaps = 3/51 (5%)

Query: 3  IGDLKKAISEKTGLDPQEQKVL---FRGKEKEDNEHLDVSGMKDKSKVLLL 50
          + DLK+ +   TG+ P+ QK+L    +GK  E++  L    +K  +K++++
Sbjct: 30 VLDLKQFLKTLTGVLPERQKLLGLKVKGKPAENDVKLGALKLKPNTKIMMM 80

>d1oqya4 d.15.1.1 (A:1-77) Ubiquitin-like domain of Rad23 homolog A (Hhr23a) {Human (Homo sapiens) [TaxId: 9606]} Length = 77

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Ubiquitin-like domain of Rad23 homolog A (Hhr23a)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 34.5 bits (79), Expect = 0.001
 Identities = 12/51 (23%), Positives = 26/51 (50%), Gaps = 3/51 (5%)

Query: 3  IGDLKKAISEKTGLD---PQEQKVLFRGKEKEDNEHLDVSGMKDKSKVLLL 50
          +  LK+ I  + G D      QK+++ GK   D+  +    + +K+ V+++
Sbjct: 25 VKVLKEKIEAEKGRDAFPVAGQKLIYAGKILSDDVPIRDYRIDEKNFVVVM 75

>d1bt0a_ d.15.1.1 (A:) Rub1 {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 73

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Rub1
species: Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]

 Score = 34.5 bits (79), Expect = 0.001
 Identities = 12/48 (25%), Positives = 28/48 (58%)

Query: 3  IGDLKKAISEKTGLDPQEQKVLFRGKEKEDNEHLDVSGMKDKSKVLLL 50
          I  +K+ + EK G+ P +Q++++ GK+  D++      ++  S + L+
Sbjct: 23 IDRIKERVEEKEGIPPVQQRLIYAGKQLADDKTAKDYNIEGGSVLHLV 70

>d1wx9a1 d.15.1.1 (A:8-80) Large proline-rich protein BAT3 {Human (Homo sapiens) [TaxId: 9606]} Length = 73

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Large proline-rich protein BAT3
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 33.3 bits (76), Expect = 0.002
 Identities = 8/48 (16%), Positives = 26/48 (54%)

Query: 3  IGDLKKAISEKTGLDPQEQKVLFRGKEKEDNEHLDVSGMKDKSKVLLL 50
          + + K+ I+    +  ++Q+++++G+  +D++ L    +  K   L+ 
Sbjct: 23 VKEFKEHIAASVSIPSEKQRLIYQGRVLQDDKKLQEYNVGGKVIHLVE 70

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	214
d1m7ka_	81	Silencer of death domains, Sodd (Bag4) {Human (Hom	99.81
d1ugoa_	99	BAG-family molecular chaperone regulator-5, BAG-5	99.8
d1uk5a_	111	BAG-family molecular chaperone regulator-3 {Mouse	99.8
d1wxva1	81	Bag-family molecular chaperone regulator-1 {Human	99.61
d1wgga_	96	Ubiquitin carboxyl-terminal hydrolase 14 {Mouse (M	99.58
d2bwfa1	73	DSK2 {Baker's yeast (Saccharomyces cerevisiae) [Ta	99.58
d1yqba1	84	Ubiquilin-3 {Human (Homo sapiens) [TaxId: 9606]}	99.57
d1t7sa_	129	BAG-family molecular chaperon regulator-1, BAG1 {N	99.56
d2zeqa1	78	Ubiquitin-like domain of parkin {Mouse (Mus muscul	99.56
d1wy8a1	76	Ubiquitin-like PHD and RING finger domain-containi	99.55
d1z2ma1	76	Interferon-induced 15 kDa protein {Human (Homo sap	99.54
d2faza1	76	Ubiquitin-like PHD and RING finger domain-containi	99.53
d1bt0a_	73	Rub1 {Mouse-ear cress (Arabidopsis thaliana) [TaxI	99.53
d1wx8a1	83	4931431F19Rik {Mouse (Mus musculus) [TaxId: 10090]	99.53
d1z2ma2	76	Interferon-induced 15 kDa protein {Human (Homo sap	99.53
d1v5ta_	90	8430435i17rik protein {Mouse (Mus musculus) [TaxId	99.51
d1wh3a_	87	2'-5'-oligoadenylate synthetase-like protein, OASL	99.51
d1m94a_	73	Ubiquitin-like modifier protein hub1 {Baker's yeas	99.51
d1hx1b_	112	BAG-family molecular chaperon regulator-1, BAG1 {H	99.51
d1ogwa_	76	Ubiquitin {Human (Homo sapiens) [TaxId: 9606]}	99.51
d1j8ca_	103	Ubiquitin-like N-terminal domain of PLIC-2 {Human	99.5
d1ttna1	80	Dendritic cell-derived ubiquitin-like protein {Hum	99.49
d1oqya4	77	Ubiquitin-like domain of Rad23 homolog A (Hhr23a)	99.47
d1zkha1	86	Splicing factor 3 subunit 1, C-terminal domain {Hu	99.47
d1wx9a1	73	Large proline-rich protein BAT3 {Human (Homo sapie	99.47
d1v86a_	95	hypothetical D7wsu128e protein {Mouse (Mus musculu	99.45
d1uh6a_	100	Ubiquitin-like protein 5, ubl5 {Mouse (Mus musculu	99.43
d1wjua_	100	NEDD8 ultimate buster-1, NUB1 {Human (Homo sapiens	99.42
d1v5oa_	102	1700011n24rik protein {Mouse (Mus musculus) [TaxId	99.41
d1uela_	95	Ubiquitin-like domain of Rad23 homolog B (Hhr23B)	99.41
d1we6a_	111	Splicing factor 3 subunit 1, C-terminal domain {Th	99.4
d1se9a_	101	Hypothetical protein At3g01050 {Thale cress (Arabi	99.36
d1wgha_	116	Ubiquitin-like protein 3, Ubl3 {Mouse (Mus musculu	99.34
d1x1ma1	94	Ubiquitin-like protein 7 {Mouse (Mus musculus) [Ta	99.33
d1v6ea_	95	Ubiquitin-like domain of tubulin folding cofactor	99.31
d1t0ya_	90	Ubiquitin-like domain of tubulin folding cofactor	99.26
d1wiaa_	95	Ubiquitin-like protein bab25500 (2010008E23Rik) {M	99.21
d1wgda_	93	Homocysteine-responsive endoplasmic reticulum-resi	99.2
d1v2ya_	105	Ubiquitin-like protein 3300001g02rik {Mouse (Mus m	99.19
d1wjna_	97	Tubulin-folding protein TbcE {Mouse (Mus musculus)	99.15
d2c9wb1	103	Elongin B {Human (Homo sapiens) [TaxId: 9606]}	99.14
d1euvb_	79	SUMO-1 (smt3 homologue) {Baker's yeast (Saccharomy	98.98
d2uyzb1	77	SUMO-1 (smt3 homologue) {Human (Homo sapiens) [Tax	98.65
d1wf9a1	94	NPL4-like protein 1 {Thale cress (Arabidopsis thal	97.9
d1wm3a_	72	SUMO-2 {Human (Homo sapiens) [TaxId: 9606]}	97.41
d2al3a1	76	Tether containing UBX domain for GLUT4 (Tug) {Mous	94.68

>d1m7ka_ a.7.7.1 (A:) Silencer of death domains, Sodd (Bag4) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: Spectrin repeat-like
superfamily: BAG domain
family: BAG domain
domain: Silencer of death domains, Sodd (Bag4)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.81  E-value=4.8e-20  Score=135.31  Aligned_cols=74  Identities=30%  Similarity=0.408  Sum_probs=69.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCchhhhhHHHHHHHHHHhhcccccch--hhHHHHHHHHHHHHHHHHHH
Q 028093           83 ALQAIAGVRAEVDKLSERVASLEVAVNGGTKVPSEELDTSAELLMKELLKLDGIEAEG--EAKVQRKTEVRRVQKFHETL  160 (214)
Q Consensus        83 a~~aI~~i~~evd~L~~~V~~~e~~v~~~~k~~eke~~~L~E~Lm~~LlkLD~Ie~~G--d~R~~RK~~VkrVQ~~le~L  160 (214)
                      +.++|..|..+|+.|..+|..|      +++..+++|..|+|+||++||+||+|+++|  ++|.+||.+|++||++++.|
T Consensus         4 ~~~~I~~i~~~v~~l~~~V~~f------~g~~~dke~~~L~E~L~~~llkLD~Ie~~G~~~vR~~RK~~vk~vq~~l~~L   77 (81)
T d1m7ka_           4 SIKKIIHVLEKVQYLEQEVEEF------VGKKTDKAYWLLEEMLTKELLELDSVETGGQDSVRQARKEAVCKIQAILEKL   77 (81)
T ss_dssp             SHHHHHHHHHHHHHHHHHHHHC------CSCTTSHHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHH------cCCcccHHHHHHHHHHHHHHHHhCCcccCCcHHHHHHHHHHHHHHHHHHHHH
Confidence            3578899999999999999999      678899999999999999999999999999  69999999999999999999


Q ss_pred             HH
Q 028093          161 DN  162 (214)
Q Consensus       161 D~  162 (214)
                      |.
T Consensus        78 D~   79 (81)
T d1m7ka_          78 EK   79 (81)
T ss_dssp             HH
T ss_pred             hc
Confidence            97

>d1ugoa_ a.7.7.1 (A:) BAG-family molecular chaperone regulator-5, BAG-5 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: Spectrin repeat-like
superfamily: BAG domain
family: BAG domain
domain: BAG-family molecular chaperone regulator-5, BAG-5
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.80  E-value=3.6e-20  Score=140.53  Aligned_cols=76  Identities=16%  Similarity=0.381  Sum_probs=71.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCchhhhhHHHHHHHHHHhhcccccch--hhHHHHHHHHHHHHHHHHH
Q 028093           82 KALQAIAGVRAEVDKLSERVASLEVAVNGGTKVPSEELDTSAELLMKELLKLDGIEAEG--EAKVQRKTEVRRVQKFHET  159 (214)
Q Consensus        82 ~a~~aI~~i~~evd~L~~~V~~~e~~v~~~~k~~eke~~~L~E~Lm~~LlkLD~Ie~~G--d~R~~RK~~VkrVQ~~le~  159 (214)
                      .++++|..|+.+|++|.++|.+|      .+++.+++|..|+|+||++||+||+|+++|  ++|.+||.+|++||++++.
T Consensus        15 ~sl~~I~~i~~ev~~L~~~V~~f------~~~~~dke~~~L~E~L~~~LlkLD~Ie~~G~~~vR~~RK~~vk~vQ~~l~~   88 (99)
T d1ugoa_          15 PSISRLQEIQREVKAIEPQVVGF------SGLSDDKNYKRLERILTKQLFEIDSVDTEGKGDIQQARKRAAQETERLLKE   88 (99)
T ss_dssp             TTHHHHHHHHHHHHHSHHHHHTC------CCCTTSSHHHHHHHHHHHHHHHHHHSCCSSCHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHH------hCccchHHHHHHHHHHHHHHHHhcCcccCCCHHHHHHHHHHHHHHHHHHHH
Confidence            46789999999999999999999      677889999999999999999999999999  6999999999999999999


Q ss_pred             HHHH
Q 028093          160 LDNL  163 (214)
Q Consensus       160 LD~~  163 (214)
                      ||..
T Consensus        89 LD~k   92 (99)
T d1ugoa_          89 LEQN   92 (99)
T ss_dssp             HHHH
T ss_pred             HHhc
Confidence            9963

>d1uk5a_ a.7.7.1 (A:) BAG-family molecular chaperone regulator-3 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: Spectrin repeat-like
superfamily: BAG domain
family: BAG domain
domain: BAG-family molecular chaperone regulator-3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.80  E-value=8.5e-20  Score=141.03  Aligned_cols=78  Identities=28%  Similarity=0.414  Sum_probs=69.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCchhhhhHHHHHHHHHHhhcccccch--hhHHHHHHHHHHHHHHHHHH
Q 028093           83 ALQAIAGVRAEVDKLSERVASLEVAVNGGTKVPSEELDTSAELLMKELLKLDGIEAEG--EAKVQRKTEVRRVQKFHETL  160 (214)
Q Consensus        83 a~~aI~~i~~evd~L~~~V~~~e~~v~~~~k~~eke~~~L~E~Lm~~LlkLD~Ie~~G--d~R~~RK~~VkrVQ~~le~L  160 (214)
                      +...|..|..+|+.|..+|..|      ++++.+++|.+|+|+||++||+||+|+++|  ++|.+||.+|++||++|+.|
T Consensus        28 ~~~ki~~i~~~v~~L~~~V~~f------~g~~~dkey~~L~E~L~~~LlkLD~Ie~~G~~~vR~~RK~~vk~vQ~~l~~L  101 (111)
T d1uk5a_          28 GVLKVEAILEKVQGLEQAVDSF------EGKKTDKKYLMIEEYLTKELLALDSVDPEGRADVRQARRDGVRKVQTILEKL  101 (111)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHTC------CSCSSSHHHHHHHHHHHHHHHHHHSCCCSSCHHHHHHHHHHHHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHHHHHHHHh------cCCcccHHHHHHHHHHHHHHHHhcCcccCCCHHHHHHHHHHHHHHHHHHHHH
Confidence            3456788888999999999888      788999999999999999999999999999  59999999999999999999


Q ss_pred             HHHHhh
Q 028093          161 DNLKAI  166 (214)
Q Consensus       161 D~~k~~  166 (214)
                      |.....
T Consensus       102 D~~~~~  107 (111)
T d1uk5a_         102 EQKASG  107 (111)
T ss_dssp             HHHHHC
T ss_pred             HhcccC
Confidence            975433

>d1wxva1 d.15.1.1 (A:7-87) Bag-family molecular chaperone regulator-1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Bag-family molecular chaperone regulator-1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.61  E-value=4e-16  Score=112.92  Aligned_cols=55  Identities=27%  Similarity=0.487  Sum_probs=51.5

Q ss_pred             CcHHHHHHHHHHHhCCCCCCceEEecCeec-CCcchhhhcCCCCCCEEEEeccccc
Q 028093            1 MMIGDLKKAISEKTGLDPQEQKVLFRGKEK-EDNEHLDVSGMKDKSKVLLLEELTN   55 (214)
Q Consensus         1 ~Tv~~LK~~l~e~tGipp~~QKLifkGK~L-~d~~~L~~~GvkdgSki~Lv~~p~s   55 (214)
                      +||++||++|++.+|+||++|||||+|+.| +|+.+|+.|||++||+|+||+++.|
T Consensus        26 ~Tv~~LK~~I~~~tgvp~~~QkL~~~G~~L~~d~~tL~~~gi~~g~~i~lv~~~~s   81 (81)
T d1wxva1          26 PVVQDLAQVVEEVIGVPQSFQKLIFKGKSLKEMETPLSALGIQDGCRVMLIGKKNS   81 (81)
T ss_dssp             CBHHHHHHHHHHHTCCCTTTCEEEETTEEECCSSSBHHHHTCCSSEEEEEESCCSC
T ss_pred             cHHHHHHHHHHHHHCcCHHHEEeeecCeEeCcCCCChHHCCCCCCCEEEEEEecCC
Confidence            489999999999999999999999999999 5788999999999999999998653

>d1wgga_ d.15.1.1 (A:) Ubiquitin carboxyl-terminal hydrolase 14 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Ubiquitin carboxyl-terminal hydrolase 14
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.58  E-value=9e-16  Score=114.25  Aligned_cols=58  Identities=22%  Similarity=0.276  Sum_probs=52.4

Q ss_pred             CcHHHHHHHHHHHhCCCCCCceEEecCeecCCcchhhhcCCCCCCEEEEeccccccccC
Q 028093            1 MMIGDLKKAISEKTGLDPQEQKVLFRGKEKEDNEHLDVSGMKDKSKVLLLEELTNKEKK   59 (214)
Q Consensus         1 ~Tv~~LK~~l~e~tGipp~~QKLifkGK~L~d~~~L~~~GvkdgSki~Lv~~p~s~e~r   59 (214)
                      .||.+||++|++.+|||+++|||||+|+.|+|+ +|..|||++|++||||+.+.....+
T Consensus        28 ~tV~~lK~~i~~~~gvp~~~QkLi~~Gk~L~d~-tL~~~gi~~g~~i~lv~t~~~~~~~   85 (96)
T d1wgga_          28 EPPMVFKAQLFALTGVQPARQKVMVKGGTLKDD-DWGNIKMKNGMTVLMMGSADALPEE   85 (96)
T ss_dssp             SCHHHHHHHHHHHTCCCTTTSCCEETTEECCSS-CCCSCCCCSSCEEECCCCCCCCCCC
T ss_pred             CcHHHHHHHhhhhcCccceeeEEeecCcccCCC-cHHHCCCCCCCEEEEEeeCCcCCCC
Confidence            489999999999999999999999999999876 7999999999999999976655443

>d2bwfa1 d.15.1.1 (A:2-74) DSK2 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: DSK2
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.58  E-value=8.7e-16  Score=108.60  Aligned_cols=52  Identities=21%  Similarity=0.424  Sum_probs=50.1

Q ss_pred             CcHHHHHHHHHHHhCCCCCCceEEecCeecCCcchhhhcCCCCCCEEEEecc
Q 028093            1 MMIGDLKKAISEKTGLDPQEQKVLFRGKEKEDNEHLDVSGMKDKSKVLLLEE   52 (214)
Q Consensus         1 ~Tv~~LK~~l~e~tGipp~~QKLifkGK~L~d~~~L~~~GvkdgSki~Lv~~   52 (214)
                      .||.+||++|++.+|+||++|||||+||.|+|+.+|+.|||++||+||||.+
T Consensus        21 ~tV~~lK~~I~~~~gip~~~qrLi~~Gk~L~D~~tL~~~~I~~g~~i~lV~~   72 (73)
T d2bwfa1          21 STVLQFKEAINKANGIPVANQRLIYSGKILKDDQTVESYHIQDGHSVHLVKS   72 (73)
T ss_dssp             CBHHHHHHHHHHHHCCCGGGEEEEETTEECCTTSBTGGGTCCTTCEEEEEEC
T ss_pred             ChHHHHHHHHHHHHCcChHHeEEEECCeEccCCCcHHHCCCCCCCEEEEEee
Confidence            4899999999999999999999999999999999999999999999999974

>d1yqba1 d.15.1.1 (A:15-98) Ubiquilin-3 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Ubiquilin-3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.57  E-value=1.3e-15  Score=110.51  Aligned_cols=55  Identities=27%  Similarity=0.409  Sum_probs=52.1

Q ss_pred             CcHHHHHHHHHHHhCCCCCCceEEecCeecCCcchhhhcCCCCCCEEEEeccccc
Q 028093            1 MMIGDLKKAISEKTGLDPQEQKVLFRGKEKEDNEHLDVSGMKDKSKVLLLEELTN   55 (214)
Q Consensus         1 ~Tv~~LK~~l~e~tGipp~~QKLifkGK~L~d~~~L~~~GvkdgSki~Lv~~p~s   55 (214)
                      .||++||.+|++.+|+||++|||||+|+.|+|+.+|++|||++||+|||+.++.+
T Consensus        27 ~tV~~lK~~i~~~~gi~~~~qrL~~~Gk~L~D~~tL~~y~i~~gsti~lv~r~~~   81 (84)
T d1yqba1          27 CTIQQLKEEISQRFKAHPDQLVLIFAGKILKDPDSLAQCGVRDGLTVHLVIKRQH   81 (84)
T ss_dssp             CBHHHHHHHHHHHHTCCGGGEEEEETTEECCTTSBHHHHTCCTTCEEEEEECCCC
T ss_pred             CcHHHHHHHHHHHHCcCchhEEEEEeeeeccccCcHHHcCCCCCCEEEEEECCCC
Confidence            4899999999999999999999999999999999999999999999999987654

>d1t7sa_ a.7.7.1 (A:) BAG-family molecular chaperon regulator-1, BAG1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All alpha proteins
fold: Spectrin repeat-like
superfamily: BAG domain
family: BAG domain
domain: BAG-family molecular chaperon regulator-1, BAG1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=99.56  E-value=3.4e-15  Score=116.82  Aligned_cols=109  Identities=19%  Similarity=0.129  Sum_probs=92.4

Q ss_pred             CEEEEeccccccccCCcccCCCCcchhhhhhchHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHhhCCCCCC------ch
Q 028093           45 SKVLLLEELTNKEKKPKEVKDSPEKKHEYAKDSEEMRKALQAIAGVRAEVDKLS-ERVASLEVAVNGGTKVP------SE  117 (214)
Q Consensus        45 Ski~Lv~~p~s~e~r~~~~~~s~~~~~~e~~k~~~~~~a~~aI~~i~~evd~L~-~~V~~~e~~v~~~~k~~------ek  117 (214)
                      ++|||+|++.+++.            ..++++...+++....+.   .++..+. .++.+++++|...+.++      +|
T Consensus         1 ~kvMviGKk~~pee------------d~~lK~L~~~Ek~v~~~~---~kl~~~n~~el~giekGFL~k~l~~eal~kl~K   65 (129)
T d1t7sa_           1 DKIIVMGGKNALVD------------DAGFKMLMQYEKHNLSNL---QKAYDLNLRDVADLERGFLEKPKQVEMGKKLEK   65 (129)
T ss_dssp             CCCEEECSSSEEEC------------HHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHH
T ss_pred             CceeeeCCCCCcHH------------HHHHHHHHHHHHHHHHHH---HHHHhhhHHHHHHHHhcccccHHHHHHHHHHHH
Confidence            47999999998776            577777777776665554   4888886 79999999999877544      89


Q ss_pred             hhhhHHHHHHHHHHhhccccc---------chhhHHHHHHHHHHHHHHHHHHHHHHhhcC
Q 028093          118 ELDTSAELLMKELLKLDGIEA---------EGEAKVQRKTEVRRVQKFHETLDNLKAINS  168 (214)
Q Consensus       118 e~~~L~E~Lm~~LlkLD~Ie~---------~Gd~R~~RK~~VkrVQ~~le~LD~~k~~n~  168 (214)
                      ++..++|.+|+.|+.||++..         ..++|.+||.+|++||.+|.+||.+.++..
T Consensus        66 rik~~~E~~Mk~LEtLDsl~l~~~~~~ee~~~~~R~kRK~LV~~iQ~~L~~~D~l~~~i~  125 (129)
T d1t7sa_          66 KVKYFNEEAERHLETLDGMNIITETTPENQAKRNREKRKTLVNGIQTLLNQNDALLRRLQ  125 (129)
T ss_dssp             HHHHHHHHHHHHHHHHHTEEECCCCCGGGSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHhhhhcCCcccCcHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Confidence            999999999999999999944         239999999999999999999999998754

>d2zeqa1 d.15.1.1 (A:1-78) Ubiquitin-like domain of parkin {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Ubiquitin-like domain of parkin
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.56  E-value=1.9e-15  Score=108.48  Aligned_cols=53  Identities=21%  Similarity=0.401  Sum_probs=50.9

Q ss_pred             CcHHHHHHHHHHHhCCCCCCceEEecCeecCCcchhhhcCCCCCCEEEEeccc
Q 028093            1 MMIGDLKKAISEKTGLDPQEQKVLFRGKEKEDNEHLDVSGMKDKSKVLLLEEL   53 (214)
Q Consensus         1 ~Tv~~LK~~l~e~tGipp~~QKLifkGK~L~d~~~L~~~GvkdgSki~Lv~~p   53 (214)
                      .||.+||++|++++||||++|||||+||+|+|+.+|.+|||++||+|||+..+
T Consensus        23 ~tV~~lK~~i~~~~gip~~~qrLi~~Gk~L~d~~tL~~y~I~~~sti~lv~R~   75 (78)
T d2zeqa1          23 TSILQLKEVVAKRQGVPADQLRVIFAGKELPNHLTVQNCDLEQQSIVHIVQRP   75 (78)
T ss_dssp             CBHHHHHHHHHHHHTCCGGGEEEEETTEEECTTCBGGGSSCCTTCEEEEEESS
T ss_pred             ccHHHHHHHHHHHHCcChhHeEEEEeeeEcCCCCCHHHcCCCCCCEEEEEecc
Confidence            48999999999999999999999999999999999999999999999998764

>d1wy8a1 d.15.1.1 (A:8-83) Ubiquitin-like PHD and RING finger domain-containing protein 2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Ubiquitin-like PHD and RING finger domain-containing protein 2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.55  E-value=3.3e-15  Score=106.92  Aligned_cols=53  Identities=21%  Similarity=0.273  Sum_probs=51.2

Q ss_pred             CcHHHHHHHHHHHhCCCCCCceEEecCeecCCcchhhhcCCCCCCEEEEeccc
Q 028093            1 MMIGDLKKAISEKTGLDPQEQKVLFRGKEKEDNEHLDVSGMKDKSKVLLLEEL   53 (214)
Q Consensus         1 ~Tv~~LK~~l~e~tGipp~~QKLifkGK~L~d~~~L~~~GvkdgSki~Lv~~p   53 (214)
                      .||.+||.+|++.+|||+++|||+|+|+.|+|+.+|+.|||++||+|||+..|
T Consensus        23 ~TV~~lK~~I~~~~gip~~~qrLi~~Gk~L~d~~tL~~y~I~~~s~i~lv~rp   75 (76)
T d1wy8a1          23 ATIEELRERVWALFDVRPECQRLFYRGKQLENGYTLFDYDVGLNDIIQLLVRP   75 (76)
T ss_dssp             CBHHHHHHHHHHHSCCCTTTEEEEETTEECCSSSBHHHHTCCTTCEEEEEECC
T ss_pred             ChHHHHHHHHHHHHCCCchhcEEEEEeeEecCCCCHHHcCCCCCCEEEEEEcc
Confidence            48999999999999999999999999999999999999999999999999876

>d1z2ma1 d.15.1.1 (A:3-78) Interferon-induced 15 kDa protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Interferon-induced 15 kDa protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.54  E-value=3.3e-15  Score=106.57  Aligned_cols=53  Identities=28%  Similarity=0.440  Sum_probs=50.4

Q ss_pred             CcHHHHHHHHHHHhCCCCCCceEEe--cCeecCCcchhhhcCCCCCCEEEEeccc
Q 028093            1 MMIGDLKKAISEKTGLDPQEQKVLF--RGKEKEDNEHLDVSGMKDKSKVLLLEEL   53 (214)
Q Consensus         1 ~Tv~~LK~~l~e~tGipp~~QKLif--kGK~L~d~~~L~~~GvkdgSki~Lv~~p   53 (214)
                      .||.+||.+|++.+||||++|||||  +||.|+|+.+|+.|||++||+|||+.+.
T Consensus        21 ~tV~~lK~~I~~~~gip~~~QrLi~~~~Gk~L~D~~tL~~y~i~~g~~i~lv~~~   75 (76)
T d1z2ma1          21 MSVSELKAQITQKIGVHAFQQRLAVHPSGVALQDRVPLASQGLGPGSTVLLVVDK   75 (76)
T ss_dssp             CCHHHHHHHHHHHHCCCGGGEEEEEETTCCBCCSSSCSGGGTCCTTCEEEEEECC
T ss_pred             CcHHHHHHHHHHHhccCCccEEEEEcCCCeeccCCCcHHHcCCCCCCEEEEEEEC
Confidence            5899999999999999999999999  8999999999999999999999999753

>d2faza1 d.15.1.1 (A:1-76) Ubiquitin-like PHD and RING finger domain-containing protein 1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Ubiquitin-like PHD and RING finger domain-containing protein 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.53  E-value=3.8e-15  Score=106.58  Aligned_cols=52  Identities=25%  Similarity=0.411  Sum_probs=49.9

Q ss_pred             CcHHHHHHHHHHHhCCCCCCceEEecCeecCCcchhhhcCCCCCCEEEEecc
Q 028093            1 MMIGDLKKAISEKTGLDPQEQKVLFRGKEKEDNEHLDVSGMKDKSKVLLLEE   52 (214)
Q Consensus         1 ~Tv~~LK~~l~e~tGipp~~QKLifkGK~L~d~~~L~~~GvkdgSki~Lv~~   52 (214)
                      .||++||++|++++|||+++|||+|+||.|+|+.+|.+|||++||+|||+.+
T Consensus        23 ~tV~~lK~~I~~~~gip~~~qrLi~~Gk~L~D~~tL~~y~I~~~sti~lv~r   74 (76)
T d2faza1          23 TKVEELRRKIQELFHVEPGLQRLFYRGKQMEDGHTLFDYEVRLNDTIQLLVR   74 (76)
T ss_dssp             CBHHHHHHHHHHHHCCCGGGEEEEETTEECCTTCBTTTTTCCTTCEEEEEEC
T ss_pred             CCHHHHHHHHHHHHCcChHHeEEEEeeEeccCCCcHHHcCCCCCCEEEEEEE
Confidence            4799999999999999999999999999999999999999999999999864

>d1bt0a_ d.15.1.1 (A:) Rub1 {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Rub1
species: Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=99.53  E-value=4.7e-15  Score=104.48  Aligned_cols=51  Identities=24%  Similarity=0.432  Sum_probs=49.3

Q ss_pred             CcHHHHHHHHHHHhCCCCCCceEEecCeecCCcchhhhcCCCCCCEEEEec
Q 028093            1 MMIGDLKKAISEKTGLDPQEQKVLFRGKEKEDNEHLDVSGMKDKSKVLLLE   51 (214)
Q Consensus         1 ~Tv~~LK~~l~e~tGipp~~QKLifkGK~L~d~~~L~~~GvkdgSki~Lv~   51 (214)
                      .||.+||++|++.+|+||++|||+|+||.|+|+.+|++|||++||+|||+-
T Consensus        21 ~tV~~lK~~i~~~~gi~~~~qrLi~~Gk~L~d~~tL~~y~I~~~sti~lvl   71 (73)
T d1bt0a_          21 DTIDRIKERVEEKEGIPPVQQRLIYAGKQLADDKTAKDYNIEGGSVLHLVL   71 (73)
T ss_dssp             CBHHHHHHHHHHHHCCCGGGEEEEETTEECCTTSBTGGGTCCTTCEEEEEE
T ss_pred             CcHHHHHHHHHHHhCCChHHEEEEECCeEcCCCCcHHHcCCCCCCEEEEEe
Confidence            489999999999999999999999999999999999999999999999985

>d1wx8a1 d.15.1.1 (A:8-90) 4931431F19Rik {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: 4931431F19Rik
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.53  E-value=3.2e-15  Score=108.19  Aligned_cols=52  Identities=25%  Similarity=0.322  Sum_probs=50.0

Q ss_pred             CcHHHHHHHHHHHhCCCCCCceEEecCeecCCcchhhhcCCCCCCEEEEecc
Q 028093            1 MMIGDLKKAISEKTGLDPQEQKVLFRGKEKEDNEHLDVSGMKDKSKVLLLEE   52 (214)
Q Consensus         1 ~Tv~~LK~~l~e~tGipp~~QKLifkGK~L~d~~~L~~~GvkdgSki~Lv~~   52 (214)
                      .||++||.+|++.+|+||++|||+|+||.|+|+.+|++|||++||+|||+.+
T Consensus        30 ~tV~~lK~~I~~~~~v~~~~qrL~f~Gk~L~d~~tL~~~gI~~gs~I~lv~r   81 (83)
T d1wx8a1          30 SNVRRFKKQISKYLHCNADRLVLIFTGKILRDQDILSQRGILDGSTVHVVVR   81 (83)
T ss_dssp             CCHHHHHHHHHHHTCSCTTTBCCEETTEECCTTSCHHHHTCCTTEEEECCBC
T ss_pred             ChHHHHHHHHHHHhCCChhHEEEEEEhhccccCCcHHHcCCCCCCEEEEEEe
Confidence            5899999999999999999999999999999999999999999999999875

>d1z2ma2 d.15.1.1 (A:79-154) Interferon-induced 15 kDa protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Interferon-induced 15 kDa protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.53  E-value=5.5e-15  Score=104.76  Aligned_cols=51  Identities=27%  Similarity=0.320  Sum_probs=49.3

Q ss_pred             CcHHHHHHHHHHHhCCCCCCceEEecCeecCCcchhhhcCCCCCCEEEEec
Q 028093            1 MMIGDLKKAISEKTGLDPQEQKVLFRGKEKEDNEHLDVSGMKDKSKVLLLE   51 (214)
Q Consensus         1 ~Tv~~LK~~l~e~tGipp~~QKLifkGK~L~d~~~L~~~GvkdgSki~Lv~   51 (214)
                      .||.+||.+|++.+|+||++|||+|+|+.|+|+.+|+.|||++||+|||+.
T Consensus        24 ~tV~~lK~~I~~~~gi~~~~qrL~~~gk~L~d~~tL~~y~I~~~sti~l~l   74 (76)
T d1z2ma2          24 QTVAHLKQQVSGLEGVQDDLFWLTFEGKPLEDQLPLGEYGLKPLSTVFMNL   74 (76)
T ss_dssp             SBHHHHHHHHHHHHTCCGGGEEEEETTEECCTTSBGGGGTCCTTCEEEEEE
T ss_pred             CcHHHHHHHHHHHhcCChhHeEEEECCeECCCCCcHHHcCCCCCCEEEEEE
Confidence            489999999999999999999999999999999999999999999999975

>d1v5ta_ d.15.1.1 (A:) 8430435i17rik protein {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: 8430435i17rik protein
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.51  E-value=8.2e-15  Score=107.31  Aligned_cols=55  Identities=27%  Similarity=0.453  Sum_probs=51.9

Q ss_pred             CcHHHHHHHHHHHhCCCCCCceEE---ecCeecCCcchhhhcCCCCCCEEEEeccccc
Q 028093            1 MMIGDLKKAISEKTGLDPQEQKVL---FRGKEKEDNEHLDVSGMKDKSKVLLLEELTN   55 (214)
Q Consensus         1 ~Tv~~LK~~l~e~tGipp~~QKLi---fkGK~L~d~~~L~~~GvkdgSki~Lv~~p~s   55 (214)
                      .||.+||++|++.+||||++||||   |+||.|+|+.+|..|||++|++||||+++.+
T Consensus        28 ~tV~~LK~~i~~~t~vp~~~QkLi~~~~~Gk~L~D~~tL~~~~i~~g~~i~lv~s~~~   85 (90)
T d1v5ta_          28 DTVLDLKQFLKTLTGVLPERQKLLGLKVKGKPAENDVKLGALKLKPNTKIMMMGTRES   85 (90)
T ss_dssp             SBHHHHHHHHHHHTCCCTTTCEEESCEETTEECCTTSBHHHHTCCTTEEEEEECCCSS
T ss_pred             CcHHHHHHHHHHHHcCCHHHhhhhhhccCCcCCCCcCcHHHcCCCCCCEEEEEeeCCC
Confidence            489999999999999999999999   5999999999999999999999999998664

>d1wh3a_ d.15.1.1 (A:) 2'-5'-oligoadenylate synthetase-like protein, OASL {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: 2'-5'-oligoadenylate synthetase-like protein, OASL
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.51  E-value=9e-15  Score=106.49  Aligned_cols=52  Identities=27%  Similarity=0.475  Sum_probs=50.2

Q ss_pred             CcHHHHHHHHHHHhCCCCCCceEEecCeecCCcchhhhcCCCCCCEEEEecc
Q 028093            1 MMIGDLKKAISEKTGLDPQEQKVLFRGKEKEDNEHLDVSGMKDKSKVLLLEE   52 (214)
Q Consensus         1 ~Tv~~LK~~l~e~tGipp~~QKLifkGK~L~d~~~L~~~GvkdgSki~Lv~~   52 (214)
                      .||.+||++|++++|||+++|||||+||+|+|+.+|.+|||++||+|||+..
T Consensus        28 ~tV~~lK~~I~~~~gip~~~qrLi~~Gk~L~d~~tL~~y~I~~~stl~l~~r   79 (87)
T d1wh3a_          28 SFILGLKQQIEDQQGLPKKQQQLEFQGQVLQDWLGLGIYGIQDSDTLILSKK   79 (87)
T ss_dssp             SBHHHHHHHHHHHTCCCTTTEEEEETTEECCSSSBHHHHTCCTTEEEEEEEC
T ss_pred             CcHHHHHHHHHHHHCcChHHeEEEeeceEcCCCCcHHHcCCCCCCEEEEEec
Confidence            4899999999999999999999999999999999999999999999999975

>d1m94a_ d.15.1.1 (A:) Ubiquitin-like modifier protein hub1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Ubiquitin-like modifier protein hub1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.51  E-value=6.9e-15  Score=104.14  Aligned_cols=50  Identities=24%  Similarity=0.343  Sum_probs=48.3

Q ss_pred             CcHHHHHHHHHHHhCCCCCCceEEecCeecCCcchhhhcCCCCCCEEEEe
Q 028093            1 MMIGDLKKAISEKTGLDPQEQKVLFRGKEKEDNEHLDVSGMKDKSKVLLL   50 (214)
Q Consensus         1 ~Tv~~LK~~l~e~tGipp~~QKLifkGK~L~d~~~L~~~GvkdgSki~Lv   50 (214)
                      .||.+||++|++.+|+||++|||+|+||.|+|+.+|++|||++||+|+|.
T Consensus        22 ~tV~~lK~~I~~~~~i~~~~q~Li~~Gk~L~d~~tL~~y~I~~gstl~L~   71 (73)
T d1m94a_          22 DSVGDFKKVLSLQIGTQPNKIVLQKGGSVLKDHISLEDYEVHDQTNLELY   71 (73)
T ss_dssp             SBHHHHHHHHHHHHCCTTTSEEEESSSCEECTTSBHHHHTCCTTEEEEEE
T ss_pred             CcHHHHHHHHHHhhcccccEEEEEEEeEEecccCcHHHcCCCCCCEEEEE
Confidence            48999999999999999999999999999999999999999999999984

>d1hx1b_ a.7.7.1 (B:) BAG-family molecular chaperon regulator-1, BAG1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: Spectrin repeat-like
superfamily: BAG domain
family: BAG domain
domain: BAG-family molecular chaperon regulator-1, BAG1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.51  E-value=2e-14  Score=110.39  Aligned_cols=96  Identities=16%  Similarity=0.246  Sum_probs=79.5

Q ss_pred             hhhhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCC------CCchhhhhHHHHHHHHHHhhcccc---cchh
Q 028093           71 HEYAKDSEEMRKALQAIAGVRAEVDKLSERVASLEVAVNGGTK------VPSEELDTSAELLMKELLKLDGIE---AEGE  141 (214)
Q Consensus        71 ~~e~~k~~~~~~a~~aI~~i~~evd~L~~~V~~~e~~v~~~~k------~~eke~~~L~E~Lm~~LlkLD~Ie---~~Gd  141 (214)
                      ..++++...+++   ++..+..+++.|.+++.+++++|...+.      +-++++..++|.+|+.|..||++.   ...+
T Consensus         7 e~~LK~l~~~ek---~v~~~~kkL~~l~~eL~giekGFL~~~l~~ea~~kl~krik~~~E~~Mk~LE~LDsl~lp~~~~~   83 (112)
T d1hx1b_           7 EVELKKLKHLEK---SVEKIADQLEELNKELTGIQQGFLPKDLQAEALCKLDRRVKATIEQFMKILEEIDTLILPENFKD   83 (112)
T ss_dssp             HHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHSCSCHHHHHHHHHTTHHHHHHHHHHHHHHHHHHTTCCCCTTCHH
T ss_pred             HHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCcHHHHH
Confidence            344555555554   4555566999999999999999988664      448999999999999999999994   3459


Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHhhcCC
Q 028093          142 AKVQRKTEVRRVQKFHETLDNLKAINSN  169 (214)
Q Consensus       142 ~R~~RK~~VkrVQ~~le~LD~~k~~n~~  169 (214)
                      +|..||.+|++||.||.++|.+.+++..
T Consensus        84 ~R~kRK~lV~~iQ~~L~q~D~l~~~i~~  111 (112)
T d1hx1b_          84 SRLKRKGLVKKVQAFLAECDTVEQNICQ  111 (112)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHTTSSC
T ss_pred             HHHHHHHHHHHHHHHHHHhHHHHHHHcc
Confidence            9999999999999999999999988653

>d1ogwa_ d.15.1.1 (A:) Ubiquitin {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Ubiquitin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.51  E-value=9.6e-15  Score=103.62  Aligned_cols=52  Identities=29%  Similarity=0.519  Sum_probs=50.1

Q ss_pred             CcHHHHHHHHHHHhCCCCCCceEEecCeecCCcchhhhcCCCCCCEEEEecc
Q 028093            1 MMIGDLKKAISEKTGLDPQEQKVLFRGKEKEDNEHLDVSGMKDKSKVLLLEE   52 (214)
Q Consensus         1 ~Tv~~LK~~l~e~tGipp~~QKLifkGK~L~d~~~L~~~GvkdgSki~Lv~~   52 (214)
                      +||++||++|+..+|+|+++|||+|+||.|+|+.+|++|||++||+|+|+..
T Consensus        21 ~tV~~lK~~I~~~~gi~~~~qrL~~~Gk~L~d~~tL~~y~i~~~s~I~L~~r   72 (76)
T d1ogwa_          21 DTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLR   72 (76)
T ss_dssp             SBHHHHHHHHHHHHCCCGGGEEEEETTEECCTTSBGGGGTCCTTCEEEEEEC
T ss_pred             CcHHHHHHhhhhhcCCChHHEEeEECCeEcCCCCCHHHcCCCCCCEEEEEEe
Confidence            5899999999999999999999999999999999999999999999999874

>d1j8ca_ d.15.1.1 (A:) Ubiquitin-like N-terminal domain of PLIC-2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Ubiquitin-like N-terminal domain of PLIC-2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.50  E-value=9.8e-15  Score=109.46  Aligned_cols=51  Identities=25%  Similarity=0.350  Sum_probs=49.4

Q ss_pred             CcHHHHHHHHHHHhCCCCCCceEEecCeecCCcchhhhcCCCCCCEEEEec
Q 028093            1 MMIGDLKKAISEKTGLDPQEQKVLFRGKEKEDNEHLDVSGMKDKSKVLLLE   51 (214)
Q Consensus         1 ~Tv~~LK~~l~e~tGipp~~QKLifkGK~L~d~~~L~~~GvkdgSki~Lv~   51 (214)
                      .||++||.+|++.+|+|+++|||||+||.|+|+.+|+.|||++|++|||+.
T Consensus        52 ~tV~~LK~~I~~~~gi~~~~qrLi~~Gk~L~D~~tL~~~~I~~g~~I~lvl  102 (103)
T d1j8ca_          52 SSVQQFKEAISKRFKSQTDQLVLIFAGKILKDQDTLIQHGIHDGLTVHLVI  102 (103)
T ss_dssp             CCHHHHHHHHHHHHCSCSSSEEEEETTEEESTTSCGGGTTCSSSEEEEEEE
T ss_pred             ChHHHHHHHHHHHHCcCHHHeeeeeeeecccCCCcHHHcCCCCCCEEEEEE
Confidence            589999999999999999999999999999999999999999999999985

>d1ttna1 d.15.1.1 (A:21-100) Dendritic cell-derived ubiquitin-like protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Dendritic cell-derived ubiquitin-like protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.49  E-value=1.6e-14  Score=103.68  Aligned_cols=52  Identities=15%  Similarity=0.314  Sum_probs=50.1

Q ss_pred             CcHHHHHHHHHHHhCCCCCCceEEecCeecCCcchhhhcCCCCCCEEEEecc
Q 028093            1 MMIGDLKKAISEKTGLDPQEQKVLFRGKEKEDNEHLDVSGMKDKSKVLLLEE   52 (214)
Q Consensus         1 ~Tv~~LK~~l~e~tGipp~~QKLifkGK~L~d~~~L~~~GvkdgSki~Lv~~   52 (214)
                      .||++||.+|++.+|+|+++|||||+|+.|+|+.+|++|||++||+|||+.+
T Consensus        24 ~tV~~lK~~I~~~~~ip~~~qrLi~~Gk~L~d~~tL~~y~I~~~sti~lvi~   75 (80)
T d1ttna1          24 DTVFHMKRRLHAAEGVEPGSQRWFFSGRPLTDKMKFEELKIPKDYVVQVIVS   75 (80)
T ss_dssp             SHHHHHHHHHHHTTCCCSTTCEEEETTEECCTTSHHHHCCCSSSCEEEEECC
T ss_pred             CcHHHHHHHHHHHhCCCcccEEEEECceEcCCCCcHHHcCCCCCCEEEEEec
Confidence            4899999999999999999999999999999999999999999999999875

>d1oqya4 d.15.1.1 (A:1-77) Ubiquitin-like domain of Rad23 homolog A (Hhr23a) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Ubiquitin-like domain of Rad23 homolog A (Hhr23a)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.47  E-value=1.8e-14  Score=102.55  Aligned_cols=51  Identities=22%  Similarity=0.330  Sum_probs=48.9

Q ss_pred             CcHHHHHHHHHHHhC---CCCCCceEEecCeecCCcchhhhcCCCCCCEEEEec
Q 028093            1 MMIGDLKKAISEKTG---LDPQEQKVLFRGKEKEDNEHLDVSGMKDKSKVLLLE   51 (214)
Q Consensus         1 ~Tv~~LK~~l~e~tG---ipp~~QKLifkGK~L~d~~~L~~~GvkdgSki~Lv~   51 (214)
                      .||++||++|++..|   +||++|||||+||.|+|+.+|++|||++||+|+||.
T Consensus        23 ~TV~~lK~~i~~~~g~~~i~~~~qrLi~~Gk~L~D~~tL~~y~I~~~s~i~~~v   76 (77)
T d1oqya4          23 ETVKVLKEKIEAEKGRDAFPVAGQKLIYAGKILSDDVPIRDYRIDEKNFVVVMV   76 (77)
T ss_dssp             CBHHHHHHHHHHHTCSSSCCSTEEEEESSSSEECSSSBTTTTCCCTTSCEEEEE
T ss_pred             CcHHHHHHHHHHhcCCCCCChHHEEeEECCcCccCCCcHHHcCCCCCCEEEEEE
Confidence            489999999999998   999999999999999999999999999999999985

>d1zkha1 d.15.1.1 (A:1-86) Splicing factor 3 subunit 1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Splicing factor 3 subunit 1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.47  E-value=2.3e-14  Score=104.75  Aligned_cols=52  Identities=23%  Similarity=0.288  Sum_probs=50.1

Q ss_pred             CcHHHHHHHHHHHhCCCCCCceEEecCeecCCcchhhhcCCCCCCEEEEecc
Q 028093            1 MMIGDLKKAISEKTGLDPQEQKVLFRGKEKEDNEHLDVSGMKDKSKVLLLEE   52 (214)
Q Consensus         1 ~Tv~~LK~~l~e~tGipp~~QKLifkGK~L~d~~~L~~~GvkdgSki~Lv~~   52 (214)
                      +||.+||++|++.+|+|+++|+|+|+|+.|+|+.+|++|||++||+|||+.+
T Consensus        32 ~tV~~lK~~I~~~~~ip~~~q~Li~~Gk~L~D~~tL~dY~I~~gsti~l~~r   83 (86)
T d1zkha1          32 DQVSVIKVKIHEATGMPAGKQKLQYEGIFIKDSNSLAYYNMANGAVIHLALK   83 (86)
T ss_dssp             SBHHHHHHHHHHHTCCCTTTEEEEETTEEECTTSBHHHHTCCTTEEEEEEES
T ss_pred             ChHHHHHHHHHhhhcCChHHEEEEeCCcCcCCCCCHHHcCCCCCCEEEEEEe
Confidence            5899999999999999999999999999999999999999999999999864

>d1wx9a1 d.15.1.1 (A:8-80) Large proline-rich protein BAT3 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Large proline-rich protein BAT3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.47  E-value=1.2e-14  Score=102.65  Aligned_cols=51  Identities=18%  Similarity=0.440  Sum_probs=48.3

Q ss_pred             CcHHHHHHHHHHHhCCCCCCceEEecCeecCCcchhhhcCCCCCCEEEEecc
Q 028093            1 MMIGDLKKAISEKTGLDPQEQKVLFRGKEKEDNEHLDVSGMKDKSKVLLLEE   52 (214)
Q Consensus         1 ~Tv~~LK~~l~e~tGipp~~QKLifkGK~L~d~~~L~~~GvkdgSki~Lv~~   52 (214)
                      .||.+||++|++++|+|+++|||||+||.|+|+.+|++||| +|++|||+-.
T Consensus        21 ~tV~~lK~~I~~~~gip~~~qrLi~~Gk~L~d~~tL~dy~i-~~~ti~lv~r   71 (73)
T d1wx9a1          21 MNVKEFKEHIAASVSIPSEKQRLIYQGRVLQDDKKLQEYNV-GGKVIHLVER   71 (73)
T ss_dssp             SBHHHHHHHHHHHHCCCTTTCCCEETTEECCSSSBHHHHTC-TTEEEBCCCS
T ss_pred             ChHHHHHHHHHHHhCCChHHEEEEECCeEccCCCCHHHhCC-CCCEEEEEec
Confidence            48999999999999999999999999999999999999999 5899999864

>d1v86a_ d.15.1.1 (A:) hypothetical D7wsu128e protein {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: hypothetical D7wsu128e protein
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.45  E-value=2.6e-14  Score=106.01  Aligned_cols=53  Identities=25%  Similarity=0.403  Sum_probs=49.7

Q ss_pred             CcHHHHHHHHHHHhCCCCCCceEEecCeecCCcchhhhcCCCCCCEEEEecccc
Q 028093            1 MMIGDLKKAISEKTGLDPQEQKVLFRGKEKEDNEHLDVSGMKDKSKVLLLEELT   54 (214)
Q Consensus         1 ~Tv~~LK~~l~e~tGipp~~QKLifkGK~L~d~~~L~~~GvkdgSki~Lv~~p~   54 (214)
                      .||.+||++|++.+|||+++|||||+|+ |+|+.+|.+|||++|++|+||+.+.
T Consensus        37 ~TV~~LK~~I~~~tgvp~~~q~Li~~g~-l~D~~tL~~~~I~~gs~i~lvgs~~   89 (95)
T d1v86a_          37 STGSELKQKIHSITGLPPAMQKVMYKGL-VPEDKTLREIKVTSGAKIMVVGSTI   89 (95)
T ss_dssp             SBHHHHHHHHHHHHCSCSTTCCCBSSSB-CCSSSBHHHHCCCTTEEEEECCSSC
T ss_pred             CcHHHHHHHHHHHhCCChhHEEEEeccc-ccCCCcHHHCCCCCCCEEEEEecCC
Confidence            4899999999999999999999999997 8889999999999999999998653

>d1uh6a_ d.15.1.1 (A:) Ubiquitin-like protein 5, ubl5 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Ubiquitin-like protein 5, ubl5
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.43  E-value=4.6e-14  Score=106.26  Aligned_cols=50  Identities=26%  Similarity=0.174  Sum_probs=48.5

Q ss_pred             CcHHHHHHHHHHHhCCCCCCceEEecCeecCCcchhhhcCCCCCCEEEEe
Q 028093            1 MMIGDLKKAISEKTGLDPQEQKVLFRGKEKEDNEHLDVSGMKDKSKVLLL   50 (214)
Q Consensus         1 ~Tv~~LK~~l~e~tGipp~~QKLifkGK~L~d~~~L~~~GvkdgSki~Lv   50 (214)
                      .||++||++|++++|+|+++|||+|+||.|+|+.+|++|||++|++|+|.
T Consensus        49 ~TV~~LK~~I~~~~gip~~~qrLi~~Gk~L~D~~tL~dygI~~GstI~L~   98 (100)
T d1uh6a_          49 DTIGDLKKLIAAQTGTRWNKIVLKKWYTIFKDHVSLGDYEIHDGMNLELY   98 (100)
T ss_dssp             SBHHHHHHHHHHHHCCCGGGCEEEETTEECCSSCBHHHHTCCTTEEEEEE
T ss_pred             ChHHHHHHHHHHHHCCCcceEEEEEEeecccCcCCHHHcCCCCCCEEEEE
Confidence            48999999999999999999999999999999999999999999999985

>d1wjua_ d.15.1.1 (A:) NEDD8 ultimate buster-1, NUB1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: NEDD8 ultimate buster-1, NUB1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.42  E-value=9.3e-14  Score=104.24  Aligned_cols=53  Identities=23%  Similarity=0.334  Sum_probs=50.6

Q ss_pred             CcHHHHHHHHHHHhCCCCCCceEEecCeecCCcchhhhcCCCCCCEEEEeccc
Q 028093            1 MMIGDLKKAISEKTGLDPQEQKVLFRGKEKEDNEHLDVSGMKDKSKVLLLEEL   53 (214)
Q Consensus         1 ~Tv~~LK~~l~e~tGipp~~QKLifkGK~L~d~~~L~~~GvkdgSki~Lv~~p   53 (214)
                      .||.+||.+|++.+|+|+++|||||+||.|+|+.+|.+|||+++++||+|..+
T Consensus        40 ~TV~~LK~~I~~~~gi~~~~qkLi~~Gk~L~d~~tL~~~gI~~~s~i~vi~~~   92 (100)
T d1wjua_          40 ITGRELRSKIAETFGLQENYIKIVINKKQLQLGKTLEEQGVAHNVKAMVLELK   92 (100)
T ss_dssp             SBHHHHHHHHHHHTTCCSTTCEEEETTEECCTTSBHHHHTCCSSEEEEEECCC
T ss_pred             cHHHHHHHHHHHHHCCCCeeEEEEEcccCcCCCcCHHHcCCCCCCEEEEEEcC
Confidence            48999999999999999999999999999999999999999999999999754

>d1v5oa_ d.15.1.1 (A:) 1700011n24rik protein {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: 1700011n24rik protein
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.41  E-value=1.3e-13  Score=103.81  Aligned_cols=54  Identities=19%  Similarity=0.366  Sum_probs=50.1

Q ss_pred             CcHHHHHHHHHHHhCCCCCCceEEecCeec-CCcchhhhcCCCCCCEEEEecccc
Q 028093            1 MMIGDLKKAISEKTGLDPQEQKVLFRGKEK-EDNEHLDVSGMKDKSKVLLLEELT   54 (214)
Q Consensus         1 ~Tv~~LK~~l~e~tGipp~~QKLifkGK~L-~d~~~L~~~GvkdgSki~Lv~~p~   54 (214)
                      +||.+||.+|+..+|||+++|||||+||.| +|..+|.+|||++|+.|+|+....
T Consensus        32 ~tV~~LK~~Ie~~~gip~~~Q~Li~~Gk~L~dd~~tL~~~gI~~g~~i~l~~r~~   86 (102)
T d1v5oa_          32 FELSNFRVLCELESGVPAEEAQIVYMEQLLTDDHCSLGSYGLKDGDMVVLLQKDN   86 (102)
T ss_dssp             CBHHHHHHHHHHHTCCCGGGBCEEETTEEECCSSSBHHHHTCCTTEEEEECBCCC
T ss_pred             ccHHHHHHHHHHHhCCCcceEEEEeCCeEeecccCCHHHcCCCCCCEEEEEECCC
Confidence            589999999999999999999999999999 577899999999999999997643

>d1uela_ d.15.1.1 (A:) Ubiquitin-like domain of Rad23 homolog B (Hhr23B) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Ubiquitin-like domain of Rad23 homolog B (Hhr23B)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.41  E-value=2.5e-13  Score=99.86  Aligned_cols=52  Identities=23%  Similarity=0.378  Sum_probs=49.2

Q ss_pred             CcHHHHHHHHHHHhC---CCCCCceEEecCeecCCcchhhhcCCCCCCEEEEecc
Q 028093            1 MMIGDLKKAISEKTG---LDPQEQKVLFRGKEKEDNEHLDVSGMKDKSKVLLLEE   52 (214)
Q Consensus         1 ~Tv~~LK~~l~e~tG---ipp~~QKLifkGK~L~d~~~L~~~GvkdgSki~Lv~~   52 (214)
                      .||++||++|++++|   +|+++|||||+||.|+|+.+|++|||++||+|+|+..
T Consensus        21 ~TV~~lK~~i~~~~~~~~i~~~~qrLi~~Gk~L~d~~tL~~y~I~~~s~i~lv~~   75 (95)
T d1uela_          21 ETVKALKEKIESEKGKDAFPVAGQKLIYAGKILNDDTALKEYKIDEKNFVVVMVT   75 (95)
T ss_dssp             SBHHHHHHHHHHHHCTTTCCTTTEEEEETTEECCTTSBGGGGTCCSSSEEEEEES
T ss_pred             ccHHHHHHHHHhhhcccCCCccceEEEECCeEccCCCcHHHcCCCCCCEEEEEEC
Confidence            489999999999987   8999999999999999999999999999999999875

>d1we6a_ d.15.1.1 (A:) Splicing factor 3 subunit 1, C-terminal domain {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Splicing factor 3 subunit 1, C-terminal domain
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=99.40  E-value=1.4e-13  Score=105.33  Aligned_cols=52  Identities=19%  Similarity=0.153  Sum_probs=50.1

Q ss_pred             CcHHHHHHHHHHHhCCCCCCceEEecCeecCCcchhhhcCCCCCCEEEEecc
Q 028093            1 MMIGDLKKAISEKTGLDPQEQKVLFRGKEKEDNEHLDVSGMKDKSKVLLLEE   52 (214)
Q Consensus         1 ~Tv~~LK~~l~e~tGipp~~QKLifkGK~L~d~~~L~~~GvkdgSki~Lv~~   52 (214)
                      .||.+||.+|++++|||+++|||+|+||.|+|+.+|..|||++|++|||+.+
T Consensus        52 dtV~~lK~~I~~~~gip~~~QrLi~~Gk~L~D~~tL~~ynI~~gsti~L~lr  103 (111)
T d1we6a_          52 ENVGSLKEKIAGEIQIPANKQKLSGKAGFLKDNMSLAHYNVGAGEILTLSLR  103 (111)
T ss_dssp             SBHHHHHHHHHHHTTCCTTTSEEECSSSBCCTTSBTTTTTCSSSCEEEEECS
T ss_pred             cHHHHHHHHHHHHHCCCccceEEEEeeEEccccCCHHHcCCCCCCEEEEEee
Confidence            4899999999999999999999999999999999999999999999999975

>d1se9a_ d.15.1.1 (A:) Hypothetical protein At3g01050 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Hypothetical protein At3g01050
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=99.36  E-value=4.8e-13  Score=101.14  Aligned_cols=56  Identities=13%  Similarity=0.129  Sum_probs=50.9

Q ss_pred             CcHHHHHHHHHHH-----hCCC--CCCceEEecCeecCCcchhhhcCCCCCC------EEEEecccccc
Q 028093            1 MMIGDLKKAISEK-----TGLD--PQEQKVLFRGKEKEDNEHLDVSGMKDKS------KVLLLEELTNK   56 (214)
Q Consensus         1 ~Tv~~LK~~l~e~-----tGip--p~~QKLifkGK~L~d~~~L~~~GvkdgS------ki~Lv~~p~s~   56 (214)
                      +||.+||++|++.     .|+|  |++|||||+||.|+|+.+|.+|+|.+|+      +|||+..|...
T Consensus        29 ~TV~~lK~~I~~~~~~~k~~iP~~~~~qRLIf~Gk~L~D~~tL~dy~i~~g~~~~~~~tmHlVvrpp~~   97 (101)
T d1se9a_          29 TTVSALKETVISEWPREKENGPKTVKEVKLISAGKVLENSKTVKDYRSPVSNLAGAVTTMHVIIQAPVT   97 (101)
T ss_dssp             CBHHHHHHHHHHHSCTTCSSSCCSGGGEEEEETTEECCTTSBGGGGSCCTTSCTTCCEEEEEEECCCSS
T ss_pred             CHHHHHHHHHHHhccccccCCCCCcccEEEEECCeEecCCCCHHHcCCCCCCcCCCceEEEEEeCCCCC
Confidence            5899999999876     8998  7899999999999999999999999998      99999976443

>d1wgha_ d.15.1.1 (A:) Ubiquitin-like protein 3, Ubl3 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Ubiquitin-like protein 3, Ubl3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.34  E-value=5.3e-13  Score=102.84  Aligned_cols=57  Identities=18%  Similarity=0.204  Sum_probs=50.8

Q ss_pred             CcHHHHHHHH--------HHHhCCCCCCceEEecCeecCCcchhhhcCCCCCCE--EEEeccccccc
Q 028093            1 MMIGDLKKAI--------SEKTGLDPQEQKVLFRGKEKEDNEHLDVSGMKDKSK--VLLLEELTNKE   57 (214)
Q Consensus         1 ~Tv~~LK~~l--------~e~tGipp~~QKLifkGK~L~d~~~L~~~GvkdgSk--i~Lv~~p~s~e   57 (214)
                      +||++||++|        ++..|+||++|||||.||.|+|+.+|..|||.+|++  |||+..+..++
T Consensus        37 ~TV~~lK~~I~~~~p~~~~e~~~~~~~~qRLiy~Gk~L~D~~tL~~~~i~~g~~~~lhlv~r~~~~~  103 (116)
T d1wgha_          37 DSASDIAKHVYDNWPMDWEEEQVSSPNILRLIYQGRFLHGNVTLGALKLPFGKTTVMHLVARETLPE  103 (116)
T ss_dssp             CBHHHHHHHHHHSSSCCSSCCCCCCTTTEEEEETTEEECSSCBTTTTTCCSSCEEEEEEEECSSCSS
T ss_pred             chHHHHHHHHHhhcccccccccCCChHHeEEEECCEEecCCCCHHHcCCCCCCEEEEEEEeCCCCCC
Confidence            5899999999        588999999999999999999999999999999987  77787655443

>d1x1ma1 d.15.1.1 (A:8-101) Ubiquitin-like protein 7 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Ubiquitin-like protein 7
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.33  E-value=8.2e-13  Score=98.65  Aligned_cols=52  Identities=27%  Similarity=0.455  Sum_probs=47.6

Q ss_pred             CcHHHHHHHHHHHh--CCC-CCCceEEecCeecCCcchhhhcCCCCCCEEEEecc
Q 028093            1 MMIGDLKKAISEKT--GLD-PQEQKVLFRGKEKEDNEHLDVSGMKDKSKVLLLEE   52 (214)
Q Consensus         1 ~Tv~~LK~~l~e~t--Gip-p~~QKLifkGK~L~d~~~L~~~GvkdgSki~Lv~~   52 (214)
                      .||.+||++|++..  ++| |++|||||+||+|+|+.+|+.|||++||+||||.+
T Consensus        38 ~tV~~lK~~i~~~~~~~~P~p~~~rLIy~Gk~L~D~~tL~~y~I~~gstihLV~r   92 (94)
T d1x1ma1          38 YSISFLKQLIAGKLQESVPDPELIDLIYCGRKLKDDQTLDFYGIQPGSTVHVLRK   92 (94)
T ss_dssp             CBHHHHHHHHHHHCTTTCCCSSSEEEEETTEECCTTCBHHHHTCCTTCEEEEEES
T ss_pred             cCHHHHHHHHHHHcccCCCChhheEEEECCeEECCCccHHHcCCCCCCEEEEEEe
Confidence            48999999999985  555 69999999999999999999999999999999974

>d1v6ea_ d.15.1.1 (A:) Ubiquitin-like domain of tubulin folding cofactor B {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Ubiquitin-like domain of tubulin folding cofactor B
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.31  E-value=9.1e-13  Score=97.81  Aligned_cols=53  Identities=11%  Similarity=0.216  Sum_probs=49.6

Q ss_pred             CcHHHHHHHHHHHhCCCCCCceEEecCe-------ecCCcchhhhcCCCCCCEEEEeccc
Q 028093            1 MMIGDLKKAISEKTGLDPQEQKVLFRGK-------EKEDNEHLDVSGMKDKSKVLLLEEL   53 (214)
Q Consensus         1 ~Tv~~LK~~l~e~tGipp~~QKLifkGK-------~L~d~~~L~~~GvkdgSki~Lv~~p   53 (214)
                      +||.+||++|+..+|+||++|||+|.|+       .++|+.+|..|||++|++|||+..+
T Consensus        29 ~TV~~LK~kle~~tGip~~~qrL~~~~~~~~~~~~l~~d~~~L~~y~i~dg~~ihlvd~~   88 (95)
T d1v6ea_          29 LTIAEFKCKLELVVGSPASCMELELYGADDKFYSKLDQEDALLGSYPVDDGCRIHVIDHS   88 (95)
T ss_dssp             SBHHHHHHHHHHHTCSCTTTCBCEEECSSSCEEEECCCSSSBTTSSSCCTTCEEEEBCCS
T ss_pred             CCHHHHHHHHHHHhCcCchhEEEEEeCCCCceeecccCCcCCHHHCCCCCCCEEEEEeCC
Confidence            5899999999999999999999999998       3589999999999999999999863

>d1t0ya_ d.15.1.1 (A:) Ubiquitin-like domain of tubulin folding cofactor B {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Ubiquitin-like domain of tubulin folding cofactor B
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=99.26  E-value=3.1e-12  Score=93.79  Aligned_cols=54  Identities=17%  Similarity=0.273  Sum_probs=49.6

Q ss_pred             CcHHHHHHHHHHHhCCCCCCceEEecCee------c-CCcchhhhcCCCCCCEEEEecccc
Q 028093            1 MMIGDLKKAISEKTGLDPQEQKVLFRGKE------K-EDNEHLDVSGMKDKSKVLLLEELT   54 (214)
Q Consensus         1 ~Tv~~LK~~l~e~tGipp~~QKLifkGK~------L-~d~~~L~~~GvkdgSki~Lv~~p~   54 (214)
                      +||++||.+|+..+|+||+.|||+|.|+.      + +|+.+|..|||+||++|||+....
T Consensus        26 ~TV~~LK~kle~~~Gip~~~q~L~~~~~~~~~~~~l~dd~~~L~~ygi~dG~~Ihvvd~~~   86 (90)
T d1t0ya_          26 MSLNDLKKKLELVVGTTVDSMRIQLFDGDDQLKGELTDGAKSLKDLGVRDGYRIHAVDVTG   86 (90)
T ss_dssp             SBHHHHHHHHHHHHCCCTTTEEEEEECSSSSEEEECCCCSSBTTTTTCCSSEEEEEEECTT
T ss_pred             CCHHHHHHHHHHHHCCChhheEEEEeCCCCCcccccccCCCCHHHCCCCCCCEEEEEeCCC
Confidence            58999999999999999999999999983      4 799999999999999999998643

>d1wiaa_ d.15.1.1 (A:) Ubiquitin-like protein bab25500 (2010008E23Rik) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Ubiquitin-like protein bab25500 (2010008E23Rik)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.21  E-value=1.1e-11  Score=92.10  Aligned_cols=51  Identities=12%  Similarity=0.181  Sum_probs=45.3

Q ss_pred             CcHHHHHHHHHHHhCCCCCCceEEecCeec-CCcchhhhcCCCCCCEEEEecccc
Q 028093            1 MMIGDLKKAISEKTGLDPQEQKVLFRGKEK-EDNEHLDVSGMKDKSKVLLLEELT   54 (214)
Q Consensus         1 ~Tv~~LK~~l~e~tGipp~~QKLifkGK~L-~d~~~L~~~GvkdgSki~Lv~~p~   54 (214)
                      .||++||++|+   .+++++|||||+||.| +|..+|..|||++|++|||+..+.
T Consensus        28 ~TV~~lK~~i~---~~~~~~qrLi~~Gk~L~dd~~tL~~y~i~~g~~v~l~~~~~   79 (95)
T d1wiaa_          28 DTVGTLKSKYF---PGQESQMKLIYQGRLLQDPARTLSSLNITNNCVIHCHRSPP   79 (95)
T ss_dssp             SBHHHHHHHHS---SSTTTTCEEEETTEECCCSSCBTTTTTCCTTEEEEEECCCC
T ss_pred             CcHHHHHHHHh---cCCcceeEEEECCEEcccCCCCHHHcCCCCCCEEEEEEcCC
Confidence            48999999885   6789999999999999 577899999999999999997543

>d1wgda_ d.15.1.1 (A:) Homocysteine-responsive endoplasmic reticulum-resident ubiquitin-like domain member 1 protein, HERPUD1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Homocysteine-responsive endoplasmic reticulum-resident ubiquitin-like domain member 1 protein, HERPUD1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.20  E-value=1.2e-11  Score=91.11  Aligned_cols=54  Identities=22%  Similarity=0.294  Sum_probs=47.6

Q ss_pred             CcHHHHHHHHHHHhC--CCCCCceEEecCeecCCcchhhhcCCCCC--CEEEEecccc
Q 028093            1 MMIGDLKKAISEKTG--LDPQEQKVLFRGKEKEDNEHLDVSGMKDK--SKVLLLEELT   54 (214)
Q Consensus         1 ~Tv~~LK~~l~e~tG--ipp~~QKLifkGK~L~d~~~L~~~Gvkdg--Ski~Lv~~p~   54 (214)
                      +||.+||++|++..|  +|+++|||||+||.|+|+.+|++|+.+.+  .+|||+-.+.
T Consensus        30 ~TV~~LK~~I~~~~~~~~~~~~qrLIy~Gk~L~D~~~L~d~~~~~~~~~viHLV~~~~   87 (93)
T d1wgda_          30 WSVGHLKAHLSRVYPERPRPEDQRLIYSGKLLLDHQCLRDLLPKQEKRHVLHLVCNVK   87 (93)
T ss_dssp             SCHHHHHHHHHHHSTTCCCTTTCEEEETTEECCSSSCHHHHSCSSSCSEEEEEECCCC
T ss_pred             CcHHHHHHHHHHHcCCCCChHHEEEEECCeEccCCCCHHHhCcccCCCCEEEEEecCC
Confidence            589999999999955  99999999999999999999999977654  4999997644

>d1v2ya_ d.15.1.1 (A:) Ubiquitin-like protein 3300001g02rik {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Ubiquitin-like protein 3300001g02rik
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.19  E-value=1.7e-12  Score=97.79  Aligned_cols=52  Identities=23%  Similarity=0.385  Sum_probs=48.2

Q ss_pred             CcHHHHHHHHHHHhCCCCCCce---------------EEecCeecC-CcchhhhcCCCCCCEEEEecc
Q 028093            1 MMIGDLKKAISEKTGLDPQEQK---------------VLFRGKEKE-DNEHLDVSGMKDKSKVLLLEE   52 (214)
Q Consensus         1 ~Tv~~LK~~l~e~tGipp~~QK---------------LifkGK~L~-d~~~L~~~GvkdgSki~Lv~~   52 (214)
                      .||.+||.+|++.+|||+++||               |||+|+.|. |..+|..|||++|++|||+..
T Consensus        28 ~TV~~LK~~I~~~~~ip~~~Qr~~~~~~~~~~~~~~~Li~~G~~L~d~~~tL~~~gI~~g~~l~lv~r   95 (105)
T d1v2ya_          28 ATVLDLKKAIQRYVQLKQEREGGVQHISWSYVWRTYHLTSAGEKLTEDRKKLRDYGIRNRDEVSFIKK   95 (105)
T ss_dssp             CBHHHHHHHHHHHHHHHHHHTTCCCCCCHHHHHTTEEEESSSCEECCSSSBHHHHTCCSSEEEEEEEC
T ss_pred             ChHHHHHHHHHHHHCcCHHHhcccccccccccccceEEEECCEECcccCCCHHHcCCCCCCEEEEEEe
Confidence            4899999999999999999998               999999995 556999999999999999965

>d1wjna_ d.15.1.1 (A:) Tubulin-folding protein TbcE {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Tubulin-folding protein TbcE
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.15  E-value=1.9e-11  Score=90.50  Aligned_cols=51  Identities=14%  Similarity=0.156  Sum_probs=47.2

Q ss_pred             CcHHHHHHHHHHHhCCCCCCceEEecCee-------c-CCcchhhhcCCCCCCEEEEec
Q 028093            1 MMIGDLKKAISEKTGLDPQEQKVLFRGKE-------K-EDNEHLDVSGMKDKSKVLLLE   51 (214)
Q Consensus         1 ~Tv~~LK~~l~e~tGipp~~QKLifkGK~-------L-~d~~~L~~~GvkdgSki~Lv~   51 (214)
                      +||++||.+|+..+|||+++|||+|.|+.       | +|..+|..|||+||++|++..
T Consensus        33 ~TV~~LK~~i~~~~gip~~~qrL~y~~~~~~~~~~~l~~d~~tL~~YgI~dg~~I~V~~   91 (97)
T d1wjna_          33 MTVQKVKGLLSRLLKVPVSELLLSYESSKMPGREIELENDLQPLQFYSVENGDCLLVRW   91 (97)
T ss_dssp             SBHHHHHHHHHTTTTCCTTTCEEEEECTTSCSCEEECCCSSSBSGGGTCCTTCEEEEEC
T ss_pred             CCHHHHHHHHHHHHCcChHHeEEEecCCCCCcccceecCCCcCHhhccCCCCCEEEEEe
Confidence            69999999999999999999999999983       5 489999999999999999864

>d2c9wb1 d.15.1.1 (B:2-104) Elongin B {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Elongin B
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.14  E-value=1.8e-11  Score=92.43  Aligned_cols=52  Identities=19%  Similarity=0.235  Sum_probs=46.9

Q ss_pred             CcHHHHHHHHHHHhCCCCCCceEEecCeecCCcchhhhcCCCCCC-------EEEEecc
Q 028093            1 MMIGDLKKAISEKTGLDPQEQKVLFRGKEKEDNEHLDVSGMKDKS-------KVLLLEE   52 (214)
Q Consensus         1 ~Tv~~LK~~l~e~tGipp~~QKLifkGK~L~d~~~L~~~GvkdgS-------ki~Lv~~   52 (214)
                      .||.+||++|++++|||+++|||||+|++|+|+.+|++|||.+++       .++|.-.
T Consensus        21 ~TV~~lK~~I~~~~gip~~~QrLi~~Gk~L~D~~TL~dYgI~~~~~~~~~~~~~~l~~~   79 (103)
T d2c9wb1          21 STVFELKRIVEGILKRPPDEQRLYKDDQLLDDGKTLGECGFTSQTARPQAPATVGLAFR   79 (103)
T ss_dssp             SBHHHHHHHHHHHHCCCGGGEEEEETTEECCTTSBHHHHTCCTTTSBTTBCEEEEEEEE
T ss_pred             CcHHHHHHHHHHHhCCCcccEEEEECCEEcCCCCCHHHcCCCcccccccCCcEEEEEEe
Confidence            489999999999999999999999999999999999999996654       6777654

>d1euvb_ d.15.1.1 (B:) SUMO-1 (smt3 homologue) {Baker's yeast (Saccharomyces cerevisiae), smt3 [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: SUMO-1 (smt3 homologue)
species: Baker's yeast (Saccharomyces cerevisiae), smt3 [TaxId: 4932]

Probab=98.98  E-value=2.2e-10  Score=81.41  Aligned_cols=52  Identities=15%  Similarity=0.261  Sum_probs=49.5

Q ss_pred             CcHHHHHHHHHHHhCCCCCCceEEecCeecCCcchhhhcCCCCCCEEEEecc
Q 028093            1 MMIGDLKKAISEKTGLDPQEQKVLFRGKEKEDNEHLDVSGMKDKSKVLLLEE   52 (214)
Q Consensus         1 ~Tv~~LK~~l~e~tGipp~~QKLifkGK~L~d~~~L~~~GvkdgSki~Lv~~   52 (214)
                      ++|..|+++++++.|+|+++|+|+|.|+.|+++.++.+|||++|++|+++-.
T Consensus        24 ~~~~~l~~~~~~~~~i~~~~~~l~f~G~~l~~~~T~~~~~i~dgd~I~v~~~   75 (79)
T d1euvb_          24 TPLRRLMEAFAKRQGKEMDSLRFLYDGIRIQADQTPEDLDMEDNDIIEAHRE   75 (79)
T ss_dssp             SCTHHHHHHHHHHTTCCGGGEEEEETTEECCTTCCTTTTTCCTTEEEEEEEC
T ss_pred             CcHHHHHHHHHHHhCCChHhEEEEECCEEeCCCCCHHHCCCCCCCEEEEEEe
Confidence            4789999999999999999999999999999999999999999999999864

>d2uyzb1 d.15.1.1 (B:20-96) SUMO-1 (smt3 homologue) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: SUMO-1 (smt3 homologue)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.65  E-value=1.2e-08  Score=71.82  Aligned_cols=52  Identities=21%  Similarity=0.410  Sum_probs=49.2

Q ss_pred             CcHHHHHHHHHHHhCCCCCCceEEecCeecCCcchhhhcCCCCCCEEEEecc
Q 028093            1 MMIGDLKKAISEKTGLDPQEQKVLFRGKEKEDNEHLDVSGMKDKSKVLLLEE   52 (214)
Q Consensus         1 ~Tv~~LK~~l~e~tGipp~~QKLifkGK~L~d~~~L~~~GvkdgSki~Lv~~   52 (214)
                      +++..|+...+++.|+|++++||+|.|+.|.++.|+.++|++||+.|.++..
T Consensus        23 t~l~kl~~~y~~~~~~~~~~~~f~fdG~~l~~~~T~~~l~~edgD~Idv~~~   74 (77)
T d2uyzb1          23 THLKKLKESYCQRQGVPMNSLRFLFEGQRIADNHTPKELGMEEEDVIEVYQE   74 (77)
T ss_dssp             SCTHHHHHHHHHHHTCCGGGEEEEETTEECCTTCCHHHHTCCTTEEEEEEEC
T ss_pred             ChHHHHHHHHHHHhCCChhHEEEEECCEECCCCCCHHHcCCCCCCEEEEEEe
Confidence            4789999999999999999999999999999999999999999999999864

>d1wf9a1 d.15.1.1 (A:8-101) NPL4-like protein 1 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: NPL4-like protein 1
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=97.90  E-value=4.2e-06  Score=61.61  Aligned_cols=52  Identities=19%  Similarity=0.238  Sum_probs=44.0

Q ss_pred             CcHHHHHHHHHHHhCCCCCCceEE-------------ecCee-c-CCcchhhhcCCCCCCEEEEecc
Q 028093            1 MMIGDLKKAISEKTGLDPQEQKVL-------------FRGKE-K-EDNEHLDVSGMKDKSKVLLLEE   52 (214)
Q Consensus         1 ~Tv~~LK~~l~e~tGipp~~QKLi-------------fkGK~-L-~d~~~L~~~GvkdgSki~Lv~~   52 (214)
                      +|+++||..|++..+||.+.|.|-             |.+-. + +|..+|++|||.+||-|+|.-+
T Consensus        21 ~Tl~~LK~~Ie~~L~VPv~~Q~LSl~~~llL~k~P~~~~~~~~l~d~~~~L~sl~i~hGsivyL~y~   87 (94)
T d1wf9a1          21 ITVSQLKTLIQDQLQIPIHNQTLSTNRNLLLAKSPSDFLAFTDMADPNLRISSLNLAHGSMVYLAYE   87 (94)
T ss_dssp             SBHHHHHHHHHHHSCCCTTTCCCBSSGGGGTCCSHHHHTTCCSSCCTTCBGGGTCCCTTCEEECCCS
T ss_pred             CcHHHHHHHHHHHhCCCcccceeecChhhhccCCccccchhhhccCCccCHHHcCccCceEEEEEee
Confidence            489999999999999999999992             22332 4 6788999999999999999764

>d1wm3a_ d.15.1.1 (A:) SUMO-2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: SUMO-2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.41  E-value=0.00014  Score=50.00  Aligned_cols=50  Identities=20%  Similarity=0.347  Sum_probs=45.8

Q ss_pred             CcHHHHHHHHHHHhCCCCCCceEEecCeecCCcchhhhcCCCCCCEEEEe
Q 028093            1 MMIGDLKKAISEKTGLDPQEQKVLFRGKEKEDNEHLDVSGMKDKSKVLLL   50 (214)
Q Consensus         1 ~Tv~~LK~~l~e~tGipp~~QKLifkGK~L~d~~~L~~~GvkdgSki~Lv   50 (214)
                      +++..|....++..|+++...+|+|.|..+..+.|..++|+++|+.|-+-
T Consensus        22 t~l~kl~~~y~~~~~~~~~~~~f~fdG~~i~~~~Tp~~l~med~D~Idv~   71 (72)
T d1wm3a_          22 TPLSKLMKAYCERQGLSMRQIRFRFDGQPINETDTPAQLEMEDEDTIDVF   71 (72)
T ss_dssp             SCTHHHHHHHHHHHTCCTTTCEEEETTEECCTTCCTTTTTCCTTEEEEEE
T ss_pred             ChHHHHHHHHHHHhCCCccceEEEECCEEcCCCCCHHHcCCCCCCEEEEE
Confidence            35788899999999999999999999999999999999999999988653

>d2al3a1 d.15.1.2 (A:10-85) Tether containing UBX domain for GLUT4 (Tug) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: UBX domain
domain: Tether containing UBX domain for GLUT4 (Tug)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=94.68  E-value=0.039  Score=38.43  Aligned_cols=53  Identities=8%  Similarity=0.181  Sum_probs=49.4

Q ss_pred             CcHHHHHHHHHHHhCCCCCCceEEecCeecCCcchhhhcCCCCCCEEEEeccc
Q 028093            1 MMIGDLKKAISEKTGLDPQEQKVLFRGKEKEDNEHLDVSGMKDKSKVLLLEEL   53 (214)
Q Consensus         1 ~Tv~~LK~~l~e~tGipp~~QKLifkGK~L~d~~~L~~~GvkdgSki~Lv~~p   53 (214)
                      +|+.++-+..+.+.|+.+++--|-|.+|.+|-..++.-.|+-+|+++-|+...
T Consensus        21 t~l~~VL~eaC~k~~~~~~~~~Lkh~~k~ldLsl~~R~sgLpnnakLELv~~s   73 (76)
T d2al3a1          21 TVLLQVLEDTCRRQDFNPSEYDLKFQRTVLDLSLQWRFANLPNNAKLEMVPVS   73 (76)
T ss_dssp             SBHHHHHHHHHHHTTCCGGGCEEEETTEEESSSCBHHHHCCCSSCEEEEECSS
T ss_pred             cCHHHHHHHHHHHhCCChhHceeeeCCEEcCccceeeecCCCCCCEEEEEEcc
Confidence            57888999999999999999999999999999999999999999999999753