Citrus Sinensis ID: 028111

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210---
Protein Sequence
MTISNLLHSPQTPLTLLHKPHNHHTRSSFLKSPSSSSFFTLTNKVNHHQTITTKSKKSDSADYPDRLISAICYFYPFFDGIQYGKYVITQFTPIQLLIQPLIPAIKVFKSFPFNGFLVFLTLYFVVVRNTNFSRYVRFNTMQAIVLDVLLIFPDLFERTFNAGEGIGLDLMMSLDSTVFLFLLVCLIYGSSSCMLGQVPRLPIVAEAADRQVL
Secondary Structure (PSIPRED)
ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHcc
Secondary Structure Prediction (SSPRO)
ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHcc
Coil and Loop (DISEMBL)
mtisnllhspqtpltllhkphnhhtrssflkspssssfftltnkvnhhqtittkskksdsadypdRLISAICyfypffdgiqygkyvitqftpiqlliqplipaikvfksfpfngfLVFLTLYFVVVRNTNFSRYVRFNTMQAIVLDVLLIFPDLFERTFNAGEGIGLDLMMSLDSTVFLFLLVCLIYgssscmlgqvprlpivaEAADRQVL
Flexible Loop (DISEMBL)
mtisnllhspqtpLTLLHKPHNHHTRSSFLKSPSSSSFFTltnkvnhhqtittkskksdsadyPDRLISAICYFYPFFDGIQYGKYVITQFTPIQLLIQPLIPAIKVFKSFPFNGFLVFLTLYFVVVRNTNFSRYVRFNTMQAIVLDVLLIFPDLFERTFNAGEGIGLDLMMSLDSTVFLFLLVCLIYGSSSCMLGQVPRLPIVAEAADRQVL
Low Complexity Region (SEG)
MTISNLLHSPQTPLTLLHKPHNHHTRssflkspssssffTLTNKVNHHQTITTKSKKSDSADYPDRLISAICYFYPFFDGIQYGKYVITQFTpiqlliqplipAIKVFKSFPFNGflvfltlyfvvvRNTNFSRYVRFNTMQAIVLDVLLIFPDLFERTFNAGEGIGLDLMMSLDSTVFLFLLVCLIYGSSSCMLGQVPRLPIVAEAADRQVL
Disordered region (IsUnstruct)
***************************************************************PDRLISAICYFYPFFDGIQYGKYVITQFTPIQLLIQPLIPAIKVFKSFPFNGFLVFLTLYFVVVRNTNFSRYVRFNTMQAIVLDVLLIFPDLFERTFNAGEGIGLDLMMSLDSTVFLFLLVCLIYGSSSCMLGQVPRLPIVA********
Disordered Region (DISOPRED)
**************************************************************YPDRLISAICYFYPFFDGIQYGKYVITQFTPIQLLIQPLIPAIKVFKSFPFNGFLVFLTLYFVVVRNTNFSRYVRFNTMQAIVLDVLLIFPDLFERTFNAGEGIGLDLMMSLDSTVFLFLLVCLIYGSSSCMLGQVPRLPIVAEAADRQVL
Disordered Region (DISEMBL)
MTISNLLHSPQTPLTLLHKP**************SSSFFTLTNKVNHH*************DYPDRLISAICYFYPFFDGIQYGKYVITQFTPIQLLIQPLIPAIKVFKSFPFNGFLVFLTLYFVVVRNTNFSRYVRFNTMQAIVLDVLLIFPDLFERTFNAGEGIGLDLMMSLDSTVFLFLLVCLIYGSSSCMLGQVPRLPIVAEAADRQVL
Disordered Region (DISPRO)
**************TL*HKP****TR*********************************SADYPDRLISAICYFYPFFDGIQYGKYVITQFTPIQLLIQPLIPAIKVFKSFPFNGFLVFLTLYFVVVRNTNFSRYVRFNTMQAIVLDVLLIFPDLFERTFNAGEGIGLDLMMSLDSTVFLFLLVCLIYGSSSCMLGQVPRLPIVAEAADRQVL
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHooooooHHHHHHHHHHHHHHHHHHHHiiiHHHHHHHHHHHHHHHHooooooooooooooHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHoooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MTISNLLHSPQTPLTLLHKPHNHHTRSSFLKSPSSSSFFTLTNKVNHHQTITTKSKKSDSADYPDRLISAICYFYPFFDGIQYGKYVITQFTPIQLLIQPLIPAIKVFKSFPFNGFLVFLTLYFVVVRNTNFSRYVRFNTMQAIVLDVLLIFPDLFERTFNAGEGIGLDLMMSLDSTVFLFLLVCLIYGSSSCMLGQVPRLPIVAEAADRQVL
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	213	2.2.26 [Sep-21-2011]
Q9FM67	209	Protein TIC 20-v, chlorop	yes	no	0.788	0.803	0.744	2e-70
O82251	208	Protein TIC 20-II, chloro	no	no	0.915	0.937	0.387	3e-35
P73387	160	Tic20 family protein OS=S	N/A	no	0.732	0.975	0.335	1e-19
P51360	203	Tic20 family protein Ycf6	N/A	no	0.751	0.788	0.291	6e-10
Q1XDC7	203	Tic20 family protein Ycf6	N/A	no	0.741	0.778	0.284	3e-09
O19916	205	Tic20 family protein Ycf6	N/A	no	0.723	0.751	0.303	5e-09
Q6B923	204	Tic20 family protein Ycf6	N/A	no	0.746	0.779	0.25	5e-07
Q85G30	197	Tic20 family protein Ycf6	N/A	no	0.474	0.512	0.306	0.0003

>sp|Q9FM67|TI205_ARATH Protein TIC 20-v, chloroplastic OS=Arabidopsis thaliana GN=TIC20-V PE=2 SV=1

 Score =  265 bits (677), Expect = 2e-70,   Method: Compositional matrix adjust.
 Identities = 125/168 (74%), Positives = 144/168 (85%)

Query: 46  NHHQTITTKSKKSDSADYPDRLISAICYFYPFFDGIQYGKYVITQFTPIQLLIQPLIPAI 105
           +   T+  +SK  DS D  DR+ISA+CYFYPFFDGIQYGK++ITQ+ P Q+LIQPL PAI
Sbjct: 42  DRAATLVLQSKGDDSVDASDRIISAVCYFYPFFDGIQYGKFIITQYQPFQILIQPLFPAI 101

Query: 106 KVFKSFPFNGFLVFLTLYFVVVRNTNFSRYVRFNTMQAIVLDVLLIFPDLFERTFNAGEG 165
           + FKSFPFNGFL+F+TLYFVVVRN NFSRYVRFNTMQAIVLDVLLIFPDL ER+FN  +G
Sbjct: 102 RAFKSFPFNGFLIFITLYFVVVRNPNFSRYVRFNTMQAIVLDVLLIFPDLLERSFNPRDG 161

Query: 166 IGLDLMMSLDSTVFLFLLVCLIYGSSSCMLGQVPRLPIVAEAADRQVL 213
            GLD++MSLDSTVFLFLLV LIYG S+C+ G  PRLP+VAEAADRQVL
Sbjct: 162 FGLDVVMSLDSTVFLFLLVSLIYGFSACLFGLTPRLPLVAEAADRQVL 209

May be involved in protein precursor import into chloroplasts. Not redundant with TIC20-I, TIC20-II or TIC20-IV.
Arabidopsis thaliana (taxid: 3702)

>sp|O82251|TI202_ARATH Protein TIC 20-II, chloroplastic OS=Arabidopsis thaliana GN=TIC20-II PE=2 SV=1

 Score =  148 bits (373), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 83/214 (38%), Positives = 124/214 (57%), Gaps = 19/214 (8%)

Query: 2   TISNLLHSPQT-PLTLLHKPHNHHTRSSFLKSPSSSSFFTLTNKVNHHQTITTKSKKSDS 60
           T++N L +P+  PL+L     +    S+F   PSS     LT + ++  T  T       
Sbjct: 11  TLTNPLSAPRCRPLSL-----SFPGSSTFSIRPSSRRATALTTRASYTPTPAT------- 58

Query: 61  ADYPDRLISAICYFYPFFDGIQYGKYVITQFTPIQLLIQPLIPAIKVFKSFPFNGFLVFL 120
               +R+IS   Y  PFF+ +QYG+++  Q+  + LL +P+ P + +++S P+  F+ F 
Sbjct: 59  ----ERVISIASYALPFFNSLQYGRFLFAQYPRLGLLFEPIFPILNLYRSVPYASFVAFF 114

Query: 121 TLYFVVVRNTNFSRYVRFNTMQAIVLDVLLIFPDLFERTFNAGE--GIGLDLMMSLDSTV 178
            LY  VVRNT+FSRYVRFN MQA+ LDVLL  P L  R  + G+  G G+  MM   + V
Sbjct: 115 GLYLGVVRNTSFSRYVRFNAMQAVTLDVLLAVPVLLTRILDPGQGGGFGMKAMMWGHTGV 174

Query: 179 FLFLLVCLIYGSSSCMLGQVPRLPIVAEAADRQV 212
           F+F  +C +YG  S +LG+ P +P VA+AA RQ+
Sbjct: 175 FVFSFMCFVYGVVSSLLGKTPYIPFVADAAGRQL 208

May be involved in protein precursor import into chloroplasts. Not redundant with TIC20-I, TIC20-IV or TIC20-V.

Arabidopsis thaliana (taxid: 3702)

>sp|P73387|YC60L_SYNY3 Tic20 family protein OS=Synechocystis sp. (strain PCC 6803 / Kazusa) GN=sll1737 PE=3 SV=1

 Score = 96.3 bits (238), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 53/158 (33%), Positives = 89/158 (56%), Gaps = 2/158 (1%)

Query: 56  KKSDSADYPDRLISAICYFYPFFDGIQYGKYVITQFTPIQLLIQPLIPAIKVFKSFPFNG 115
             + +AD  DR  SA+ Y  P  D   +G +++ QF  +Q++  P++P ++ +  FPF  
Sbjct: 2   ASNSTADGKDRFFSALIYVIPLIDAFMFGGFLLQQFPVLQIIYLPIMPLLQFYYQFPFAS 61

Query: 116 FLVFLTLYFVVVRNTNFSRYVRFNTMQAIVLDVLL-IFPDLFERTFNAGEGIGLDLMMSL 174
           F++F+ L+  VVRN N S ++RFN MQAI++ +LL +F  +         G GL +  +L
Sbjct: 62  FIIFIVLFMAVVRNNNISHFIRFNAMQAILIGILLSLFGLIVAYVIQPVFGQGL-VTETL 120

Query: 175 DSTVFLFLLVCLIYGSSSCMLGQVPRLPIVAEAADRQV 212
            +  FL  L C  +G    +LG+   +P +++AA  QV
Sbjct: 121 YNFAFLGALACGFFGIVQSVLGRYAEIPTISDAAYSQV 158

Synechocystis sp. (strain PCC 6803 / Kazusa) (taxid: 1111708)

>sp|P51360|YCF60_PORPU Tic20 family protein Ycf60 OS=Porphyra purpurea GN=ycf60 PE=3 SV=1

 Score = 64.3 bits (155), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 56/192 (29%), Positives = 96/192 (50%), Gaps = 32/192 (16%)

Query: 35  SSSFFTLTNKVNHHQTITTKSKKSDSADYPDRLISAICYFYPFFDGIQ-YGKYVITQF-- 91
           +  + TL   +N     TT+SK   S     RL+S I Y+ P F+G+Q +G+YV+  +  
Sbjct: 25  AYKYITLNTNIN-----TTESKTRLSI----RLVSIIPYYLPLFEGLQNFGQYVLPDYPV 75

Query: 92  TPIQLLIQPLIPAIKVFKSFPFNGFLVFLTLYFVVVRNTN---FSRYVRFNTMQAIVL-- 146
             I L  + L+P +  + +    G + F  LY+V+VRN +     + VRFN+MQ+I+L  
Sbjct: 76  GAIPLYKKILLPMLIFYMNHAILGLVTFFALYYVLVRNKSPITVHQLVRFNSMQSILLFL 135

Query: 147 ------DVLLIFPDLFERTFNAGEGIGLDLMMSLDSTVFLFLLVCLIYGSSSCMLGQVPR 200
                  +   FP  F  +F     IGL    ++ + +F F+L  + Y     + G+   
Sbjct: 136 VGSLFGAIFRAFPIEFRISF-----IGL----TVCNMMFWFILSTITYSIVKAIQGKYSN 186

Query: 201 LPIVAEAADRQV 212
           +P+++EA   Q+
Sbjct: 187 IPVISEAVRIQI 198

Porphyra purpurea (taxid: 2787)

>sp|Q1XDC7|YCF60_PORYE Tic20 family protein Ycf60 OS=Porphyra yezoensis GN=ycf60 PE=3 SV=1

 Score = 62.0 bits (149), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 54/190 (28%), Positives = 94/190 (49%), Gaps = 32/190 (16%)

Query: 37  SFFTLTNKVNHHQTITTKSKKSDSADYPDRLISAICYFYPFFDGIQ-YGKYVITQF--TP 93
            +  L  K+N+     T+SK   S     RL+S + Y+ P F+G+Q +G+YV+  +    
Sbjct: 27  KYIKLNKKINN-----TESKTRLSI----RLVSTVPYYLPLFEGLQNFGQYVLPDYPVAA 77

Query: 94  IQLLIQPLIPAIKVFKSFPFNGFLVFLTLYFVVVRNTN---FSRYVRFNTMQAIVL---- 146
           I L  + ++P +  + +    G + F  LY+V+VRN +     + VRFN+MQ+I+L    
Sbjct: 78  IPLYKKIILPMLIFYMNHAILGLVTFFALYYVLVRNKSPIPVHQLVRFNSMQSILLFLVG 137

Query: 147 ----DVLLIFPDLFERTFNAGEGIGLDLMMSLDSTVFLFLLVCLIYGSSSCMLGQVPRLP 202
                V   FP  F  +F       L LM+   + +F F+L  + Y     + G+   +P
Sbjct: 138 SLFGAVFRAFPIEFRISF-------LGLMVC--NMMFWFVLSTITYSIVKAVQGKYSNIP 188

Query: 203 IVAEAADRQV 212
           +++EA   Q+
Sbjct: 189 VISEAVRIQI 198

Porphyra yezoensis (taxid: 2788)

>sp|O19916|YCF60_CYACA Tic20 family protein Ycf60 OS=Cyanidium caldarium GN=ycf60 PE=3 SV=1

 Score = 61.2 bits (147), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 50/165 (30%), Positives = 81/165 (49%), Gaps = 11/165 (6%)

Query: 55  SKKSDSADYPD---RLISAICYFYPFFDGI-QYGKYVITQFTPIQLLIQPLIPAIKV-FK 109
           S K    DYP    R IS + YF P  +GI Q+G   I   + I+++ +  +  I V + 
Sbjct: 39  SNKVYKEDYPSIMARAISCLIYFLPLLEGIAQFGIVCIDDHSWIRIIYKNTLAYIVVPYL 98

Query: 110 SFPFNGFLVFLTLYFVVVRN-TNFSRYVRFNTMQAIVLDVL--LIFPDLFERTFNAGEGI 166
             P  GF +F+TLY + VR     S++++F+ +QA++L +L  +I   L       G   
Sbjct: 99  ESPLIGFCIFITLYLIFVRGIIQISKFIKFHIVQALLLYLLDSVIGTVLTSLPLEIGYSF 158

Query: 167 GLDLMMSLDSTVFLFLLVCLIYGSSSCMLGQVPRLPIVAEAADRQ 211
             D    L  T+ L   +  IY  +  + GQ   +P+++EAA  Q
Sbjct: 159 IGD---RLADTLLLITFMISIYAGTDALKGQYSNIPLISEAAKMQ 200

Cyanidium caldarium (taxid: 2771)

>sp|Q6B923|YCF60_GRATL Tic20 family protein Ycf60 OS=Gracilaria tenuistipitata var. liui GN=ycf60 PE=3 SV=2

 Score = 54.3 bits (129), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 44/176 (25%), Positives = 89/176 (50%), Gaps = 17/176 (9%)

Query: 48  HQTITTKSKKSDSADYPDRLISAICYFYPFFDGIQ-YGKYVITQ--FTPIQLLIQPLIPA 104
           H   + K+   +     DRL S + Y+ P  +G+Q +G+ ++    F  +Q+  + L+P 
Sbjct: 31  HIAQSYKNHDVNDITIVDRLGSILPYWLPLLEGLQNFGQQILPDYPFNVMQIYKKTLMPL 90

Query: 105 IKVFKSFPFNGFLVFLTLYFVVVRNTN---FSRYVRFNTMQAIVLDVLLIFPDLFERTFN 161
           +  + + P    ++F  LY++ VRN +      ++RFN +Q+I   +L +   L   TF 
Sbjct: 91  VIFYVTHPTLAVIIFFILYYLFVRNKSPIPDRPFIRFNVLQSI---LLFLINSLLGATFR 147

Query: 162 AGEGIGLDLMMSLD-----STVFLFLLVCLIYGSSSCMLGQVPRLPIVAEAADRQV 212
           A   + ++  MSL      +T+F F+L  + Y     + G+  ++P++++A   Q+
Sbjct: 148 A---LPIEFRMSLYGLMMCNTLFWFVLSTISYSIIKSIEGKYAKIPVISQAVRIQI 200

Gracilaria tenuistipitata var. liui (taxid: 285951)

>sp|Q85G30|YCF60_CYAME Tic20 family protein Ycf60 OS=Cyanidioschyzon merolae GN=ycf60 PE=3 SV=1

 Score = 45.4 bits (106), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 34/111 (30%), Positives = 58/111 (52%), Gaps = 10/111 (9%)

Query: 107 VFKSFPFNGFLVFLTLYFVVVRNT-NFSRYVRFNTMQAIVLDVLLIFPDLFERTFNAGEG 165
           V+ ++P  GF++F   YF++VR      + VRF+  QA+++ +L     +     NA   
Sbjct: 84  VYSTYPILGFMIFFMSYFLLVRGILQVRKKVRFHVSQALIIYLL---TSIIGSLLNALPE 140

Query: 166 IGLDLMMSLDST----VFLFLLVCLIYGSSSCMLGQVPRLPIVAEAADRQV 212
             + LM    ST    +F+  +  +IY S     G++ RLP+++EAA  QV
Sbjct: 141 --MILMGWFGSTCLDILFILTMGSVIYASYQVWNGELTRLPLISEAAKLQV 189

Cyanidioschyzon merolae (taxid: 45157)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	213
296089919	212	unnamed protein product [Vitis vinifera]	0.938	0.943	0.728	5e-79
225461922	208	PREDICTED: protein TIC 20-v, chloroplast	0.830	0.850	0.808	5e-78
224132152	203	predicted protein [Populus trichocarpa]	0.920	0.965	0.731	2e-77
356552589	211	PREDICTED: tic20 family protein-like [Gl	0.882	0.890	0.760	5e-77
356501638	211	PREDICTED: tic20 family protein-like iso	0.765	0.772	0.846	2e-76
357495053	215	Ycf60-like protein [Medicago truncatula]	0.863	0.855	0.771	2e-76
449461063	212	PREDICTED: protein TIC 20-v, chloroplast	0.760	0.764	0.814	1e-72
356570214	208	PREDICTED: tic20 family protein-like [Gl	0.896	0.918	0.724	1e-72
297796449	209	hypothetical protein ARALYDRAFT_918714 [	0.887	0.904	0.693	2e-69
15240567	209	uncharacterized protein [Arabidopsis tha	0.788	0.803	0.744	1e-68

>gi|296089919|emb|CBI39738.3| unnamed protein product [Vitis vinifera]

 Score =  299 bits (766), Expect = 5e-79,   Method: Compositional matrix adjust.
 Identities = 153/210 (72%), Positives = 171/210 (81%), Gaps = 10/210 (4%)

Query: 14  LTLLHKPHNHHTRSSFLKSP----SSSSFFTLTNKV------NHHQTITTKSKKSDSADY 63
           +T++++P      S+   SP       S  TLT K+         ++I  +SK S+SAD 
Sbjct: 3   ITIIYRPLLSPLSSTLQSSPLFPIRHPSLLTLTTKLRCPKAQERRRSIAAQSKGSNSADP 62

Query: 64  PDRLISAICYFYPFFDGIQYGKYVITQFTPIQLLIQPLIPAIKVFKSFPFNGFLVFLTLY 123
           PDRLISA+CYFYPFFDGIQYGKYV+TQFTPIQLLIQPL PAIKVFKSFPFNGFLVFLTLY
Sbjct: 63  PDRLISAVCYFYPFFDGIQYGKYVLTQFTPIQLLIQPLFPAIKVFKSFPFNGFLVFLTLY 122

Query: 124 FVVVRNTNFSRYVRFNTMQAIVLDVLLIFPDLFERTFNAGEGIGLDLMMSLDSTVFLFLL 183
           FVVVRN NFSRYVRFNTMQAIVLDVLLIFPDL ER+FN  +G+GLD +MSLDSTVFLFLL
Sbjct: 123 FVVVRNRNFSRYVRFNTMQAIVLDVLLIFPDLLERSFNPRDGLGLDFVMSLDSTVFLFLL 182

Query: 184 VCLIYGSSSCMLGQVPRLPIVAEAADRQVL 213
           V LIYGSSSC+LGQVPRLPIVAEAADRQVL
Sbjct: 183 VSLIYGSSSCLLGQVPRLPIVAEAADRQVL 212

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225461922|ref|XP_002267869.1| PREDICTED: protein TIC 20-v, chloroplastic [Vitis vinifera]

 Score =  296 bits (757), Expect = 5e-78,   Method: Compositional matrix adjust.
 Identities = 148/183 (80%), Positives = 160/183 (87%), Gaps = 6/183 (3%)

Query: 37  SFFTLTNKV------NHHQTITTKSKKSDSADYPDRLISAICYFYPFFDGIQYGKYVITQ 90
           S  TLT K+         ++I  +SK S+SAD PDRLISA+CYFYPFFDGIQYGKYV+TQ
Sbjct: 26  SLLTLTTKLRCPKAQERRRSIAAQSKGSNSADPPDRLISAVCYFYPFFDGIQYGKYVLTQ 85

Query: 91  FTPIQLLIQPLIPAIKVFKSFPFNGFLVFLTLYFVVVRNTNFSRYVRFNTMQAIVLDVLL 150
           FTPIQLLIQPL PAIKVFKSFPFNGFLVFLTLYFVVVRN NFSRYVRFNTMQAIVLDVLL
Sbjct: 86  FTPIQLLIQPLFPAIKVFKSFPFNGFLVFLTLYFVVVRNRNFSRYVRFNTMQAIVLDVLL 145

Query: 151 IFPDLFERTFNAGEGIGLDLMMSLDSTVFLFLLVCLIYGSSSCMLGQVPRLPIVAEAADR 210
           IFPDL ER+FN  +G+GLD +MSLDSTVFLFLLV LIYGSSSC+LGQVPRLPIVAEAADR
Sbjct: 146 IFPDLLERSFNPRDGLGLDFVMSLDSTVFLFLLVSLIYGSSSCLLGQVPRLPIVAEAADR 205

Query: 211 QVL 213
           QVL
Sbjct: 206 QVL 208

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224132152|ref|XP_002328198.1| predicted protein [Populus trichocarpa] gi|222837713|gb|EEE76078.1| predicted protein [Populus trichocarpa]

 Score =  294 bits (752), Expect = 2e-77,   Method: Compositional matrix adjust.
 Identities = 150/205 (73%), Positives = 165/205 (80%), Gaps = 9/205 (4%)

Query: 10  PQTPLTLLHKPHNHHTRSSFLKSPSSSSFFTLTNKVNH-HQTITTKSKKSDSADYPDRLI 68
           PQ PLTL  KP        FL S  + SF     K     + I  KS  +DS D  DR+I
Sbjct: 7   PQAPLTLSQKP--------FLLSLRNPSFLPHARKWKGPRRLILAKSNGNDSVDTTDRII 58

Query: 69  SAICYFYPFFDGIQYGKYVITQFTPIQLLIQPLIPAIKVFKSFPFNGFLVFLTLYFVVVR 128
           SA+CYFYPFFDGIQYGKYVITQF+PIQ LIQPL PAIKVFKSFP NGFLVFLTLYFVVVR
Sbjct: 59  SAVCYFYPFFDGIQYGKYVITQFSPIQALIQPLFPAIKVFKSFPLNGFLVFLTLYFVVVR 118

Query: 129 NTNFSRYVRFNTMQAIVLDVLLIFPDLFERTFNAGEGIGLDLMMSLDSTVFLFLLVCLIY 188
           N+NFSRYVRFNTMQAIVLDVLLIFPDL ER+FN  +G+GLDL+MSLDSTVFL+LLVCLIY
Sbjct: 119 NSNFSRYVRFNTMQAIVLDVLLIFPDLLERSFNPRDGLGLDLLMSLDSTVFLYLLVCLIY 178

Query: 189 GSSSCMLGQVPRLPIVAEAADRQVL 213
           GS+SC+ GQ+PRLPIVAEAADRQVL
Sbjct: 179 GSTSCLFGQIPRLPIVAEAADRQVL 203

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356552589|ref|XP_003544648.1| PREDICTED: tic20 family protein-like [Glycine max]

 Score =  293 bits (749), Expect = 5e-77,   Method: Compositional matrix adjust.
 Identities = 146/192 (76%), Positives = 163/192 (84%), Gaps = 4/192 (2%)

Query: 26  RSSFLKSPSSSSFFTLTNKVNH-HQT---ITTKSKKSDSADYPDRLISAICYFYPFFDGI 81
           +S+FL  P   +   L  K+   HQ    I  KS  SDSAD PDRLISA+CYFYPFFDGI
Sbjct: 20  QSTFLHPPPLLTLNILPKKLRKPHQLRTLIVAKSNGSDSADVPDRLISALCYFYPFFDGI 79

Query: 82  QYGKYVITQFTPIQLLIQPLIPAIKVFKSFPFNGFLVFLTLYFVVVRNTNFSRYVRFNTM 141
           QYGKYVITQF P+Q ++QPL+PAI+VFKSFPFNGFLVFLTLYFVVVRN NFS+YVRFNTM
Sbjct: 80  QYGKYVITQFYPLQAIVQPLVPAIRVFKSFPFNGFLVFLTLYFVVVRNPNFSKYVRFNTM 139

Query: 142 QAIVLDVLLIFPDLFERTFNAGEGIGLDLMMSLDSTVFLFLLVCLIYGSSSCMLGQVPRL 201
           QA+VLDVLLIFPDL ER FN  +G+GLDL+MSLDSTVFLFLLVCLIYGSSSC+LGQ+PRL
Sbjct: 140 QAVVLDVLLIFPDLLERGFNPKDGLGLDLIMSLDSTVFLFLLVCLIYGSSSCLLGQIPRL 199

Query: 202 PIVAEAADRQVL 213
           PIVAEAADRQVL
Sbjct: 200 PIVAEAADRQVL 211

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356501638|ref|XP_003519631.1| PREDICTED: tic20 family protein-like isoform 1 [Glycine max] gi|356501640|ref|XP_003519632.1| PREDICTED: tic20 family protein-like isoform 2 [Glycine max]

 Score =  291 bits (744), Expect = 2e-76,   Method: Compositional matrix adjust.
 Identities = 138/163 (84%), Positives = 151/163 (92%)

Query: 51  ITTKSKKSDSADYPDRLISAICYFYPFFDGIQYGKYVITQFTPIQLLIQPLIPAIKVFKS 110
           I  KS  SDSAD PDRLISA+CYFYPFFDGIQYGKYVITQF P+Q ++QPL+PAI+VFKS
Sbjct: 49  IVAKSNGSDSADVPDRLISALCYFYPFFDGIQYGKYVITQFYPVQAIVQPLVPAIRVFKS 108

Query: 111 FPFNGFLVFLTLYFVVVRNTNFSRYVRFNTMQAIVLDVLLIFPDLFERTFNAGEGIGLDL 170
           FPFNGFLVFLTLYFVVVRN NFS+YVRFNTMQA+VLDVLLIFPDL ER FN  +G+GLDL
Sbjct: 109 FPFNGFLVFLTLYFVVVRNPNFSKYVRFNTMQAVVLDVLLIFPDLLERGFNPKDGLGLDL 168

Query: 171 MMSLDSTVFLFLLVCLIYGSSSCMLGQVPRLPIVAEAADRQVL 213
           +MSLDSTVFLFLLVCLIYGSSSC+LGQ+PRLPIVAEAADRQVL
Sbjct: 169 IMSLDSTVFLFLLVCLIYGSSSCLLGQIPRLPIVAEAADRQVL 211

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357495053|ref|XP_003617815.1| Ycf60-like protein [Medicago truncatula] gi|355519150|gb|AET00774.1| Ycf60-like protein [Medicago truncatula]

 Score =  290 bits (742), Expect = 2e-76,   Method: Compositional matrix adjust.
 Identities = 145/188 (77%), Positives = 158/188 (84%), Gaps = 4/188 (2%)

Query: 30  LKSPSSSSFFTLTNKVNHHQT----ITTKSKKSDSADYPDRLISAICYFYPFFDGIQYGK 85
           L SP+ SS FTL  K          I +KS  SDSAD  DRLISA+CYFYPFFDGIQYGK
Sbjct: 28  LSSPNPSSLFTLPKKFTKSNKLRTLIVSKSNNSDSADASDRLISALCYFYPFFDGIQYGK 87

Query: 86  YVITQFTPIQLLIQPLIPAIKVFKSFPFNGFLVFLTLYFVVVRNTNFSRYVRFNTMQAIV 145
           +VITQF PIQ ++QPLIPAI+VFKSFPFNGFLVFLTLYF VVRN NFS+YVRFNTMQAIV
Sbjct: 88  FVITQFYPIQAIVQPLIPAIRVFKSFPFNGFLVFLTLYFFVVRNPNFSKYVRFNTMQAIV 147

Query: 146 LDVLLIFPDLFERTFNAGEGIGLDLMMSLDSTVFLFLLVCLIYGSSSCMLGQVPRLPIVA 205
           LDVLLIFPDL ER FN   G GLDL+MSLDSTVFLFLLVCLIYGSSSC+LGQ+PRLPIVA
Sbjct: 148 LDVLLIFPDLLERGFNPRGGFGLDLLMSLDSTVFLFLLVCLIYGSSSCILGQLPRLPIVA 207

Query: 206 EAADRQVL 213
           +AADRQV+
Sbjct: 208 DAADRQVM 215

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449461063|ref|XP_004148263.1| PREDICTED: protein TIC 20-v, chloroplastic-like [Cucumis sativus] gi|449515197|ref|XP_004164636.1| PREDICTED: protein TIC 20-v, chloroplastic-like [Cucumis sativus]

 Score =  278 bits (710), Expect = 1e-72,   Method: Compositional matrix adjust.
 Identities = 132/162 (81%), Positives = 147/162 (90%)

Query: 52  TTKSKKSDSADYPDRLISAICYFYPFFDGIQYGKYVITQFTPIQLLIQPLIPAIKVFKSF 111
           T     ++SAD PDRLISAICYFYPFFDG+QYGKYVITQ+TP Q+LIQPL+PAI+VFKSF
Sbjct: 51  TGDDNNNNSADAPDRLISAICYFYPFFDGVQYGKYVITQYTPFQVLIQPLVPAIRVFKSF 110

Query: 112 PFNGFLVFLTLYFVVVRNTNFSRYVRFNTMQAIVLDVLLIFPDLFERTFNAGEGIGLDLM 171
           P N FLVFLTLYFVVVRN NFSRYVRFN MQAIVLDVLLIFPDL ER+FN   G+GLDL+
Sbjct: 111 PLNSFLVFLTLYFVVVRNPNFSRYVRFNIMQAIVLDVLLIFPDLLERSFNPRGGLGLDLV 170

Query: 172 MSLDSTVFLFLLVCLIYGSSSCMLGQVPRLPIVAEAADRQVL 213
           MSLDSTVFLFLL+CLIYGSSSC+LGQ+PRLPIVA+AADRQV+
Sbjct: 171 MSLDSTVFLFLLICLIYGSSSCLLGQIPRLPIVADAADRQVM 212

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356570214|ref|XP_003553285.1| PREDICTED: tic20 family protein-like [Glycine max]

 Score =  278 bits (710), Expect = 1e-72,   Method: Compositional matrix adjust.
 Identities = 142/196 (72%), Positives = 159/196 (81%), Gaps = 5/196 (2%)

Query: 22  NHHTRSSFLKSPSSSSFFTLTNKVNH-HQT---ITTKSKKSDSADYPDRLISAICYFYPF 77
           +  T   F  SPS  +   L  K+   HQ    I  KS  SDSAD PDRLISA+CYFYPF
Sbjct: 14  SEATSIHFSASPSLLTLNILPKKLRKPHQLRTLIVAKSNGSDSADVPDRLISALCYFYPF 73

Query: 78  FDGIQYGKYVITQFTPIQLLIQPLIPAIKVFKSFPFNGFLVFLTLYFVVVRNTNFSRYVR 137
           FD IQYGKYVITQF P+Q ++QPL+PAI+VFKSFPFNGFLVFLTLYFVVVRN NFS+YVR
Sbjct: 74  FDCIQYGKYVITQFYPVQAIVQPLVPAIRVFKSFPFNGFLVFLTLYFVVVRNPNFSKYVR 133

Query: 138 FNTMQAIVLDVLLIFPDLFERTFNAGEGIGLDLMMSLDSTVFLFLLVCLIYGSSSCMLGQ 197
           F TMQA+VLDVLLIFPDL ER FN  +G+G DL++SLDSTVFLFLLVCLIYG SSC+LGQ
Sbjct: 134 FKTMQAVVLDVLLIFPDLLERGFNPKDGLGFDLIISLDSTVFLFLLVCLIYG-SSCLLGQ 192

Query: 198 VPRLPIVAEAADRQVL 213
           +PRLPIVAEAADRQVL
Sbjct: 193 IPRLPIVAEAADRQVL 208

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297796449|ref|XP_002866109.1| hypothetical protein ARALYDRAFT_918714 [Arabidopsis lyrata subsp. lyrata] gi|297311944|gb|EFH42368.1| hypothetical protein ARALYDRAFT_918714 [Arabidopsis lyrata subsp. lyrata]

 Score =  267 bits (682), Expect = 2e-69,   Method: Compositional matrix adjust.
 Identities = 131/189 (69%), Positives = 151/189 (79%)

Query: 25  TRSSFLKSPSSSSFFTLTNKVNHHQTITTKSKKSDSADYPDRLISAICYFYPFFDGIQYG 84
           T  SFL    S+ F           T+  +SK  DS D  DR+ISA+CYFYPFFDGIQYG
Sbjct: 21  TGRSFLPLNPSTQFPKPRLSRERAATLVLQSKGDDSVDASDRIISAVCYFYPFFDGIQYG 80

Query: 85  KYVITQFTPIQLLIQPLIPAIKVFKSFPFNGFLVFLTLYFVVVRNTNFSRYVRFNTMQAI 144
           K++ITQ+ P Q+LIQPL PAI+ FKSFPFNGFL+F+TLYFVVVRN NFSRYVRFNTMQAI
Sbjct: 81  KFIITQYQPFQILIQPLFPAIRAFKSFPFNGFLIFITLYFVVVRNPNFSRYVRFNTMQAI 140

Query: 145 VLDVLLIFPDLFERTFNAGEGIGLDLMMSLDSTVFLFLLVCLIYGSSSCMLGQVPRLPIV 204
           VLDVLLIFPDL ER+FN  +G GLD++MSLDSTVFLFLLV LIYG S+C+ G +PRLP+V
Sbjct: 141 VLDVLLIFPDLLERSFNPRDGFGLDVVMSLDSTVFLFLLVSLIYGFSACLFGLIPRLPLV 200

Query: 205 AEAADRQVL 213
           AEAADRQVL
Sbjct: 201 AEAADRQVL 209

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|15240567|ref|NP_200382.1| uncharacterized protein [Arabidopsis thaliana] gi|75171614|sp|Q9FM67.1|TI205_ARATH RecName: Full=Protein TIC 20-v, chloroplastic; AltName: Full=Translocon at the inner envelope membrane of chloroplasts 20-V; Short=AtTIC20-v; Flags: Precursor gi|9758605|dbj|BAB09238.1| unnamed protein product [Arabidopsis thaliana] gi|25082851|gb|AAN72007.1| putative protein [Arabidopsis thaliana] gi|30023660|gb|AAP13363.1| At5g55710 [Arabidopsis thaliana] gi|332009288|gb|AED96671.1| uncharacterized protein [Arabidopsis thaliana]

 Score =  265 bits (677), Expect = 1e-68,   Method: Compositional matrix adjust.
 Identities = 125/168 (74%), Positives = 144/168 (85%)

Query: 46  NHHQTITTKSKKSDSADYPDRLISAICYFYPFFDGIQYGKYVITQFTPIQLLIQPLIPAI 105
           +   T+  +SK  DS D  DR+ISA+CYFYPFFDGIQYGK++ITQ+ P Q+LIQPL PAI
Sbjct: 42  DRAATLVLQSKGDDSVDASDRIISAVCYFYPFFDGIQYGKFIITQYQPFQILIQPLFPAI 101

Query: 106 KVFKSFPFNGFLVFLTLYFVVVRNTNFSRYVRFNTMQAIVLDVLLIFPDLFERTFNAGEG 165
           + FKSFPFNGFL+F+TLYFVVVRN NFSRYVRFNTMQAIVLDVLLIFPDL ER+FN  +G
Sbjct: 102 RAFKSFPFNGFLIFITLYFVVVRNPNFSRYVRFNTMQAIVLDVLLIFPDLLERSFNPRDG 161

Query: 166 IGLDLMMSLDSTVFLFLLVCLIYGSSSCMLGQVPRLPIVAEAADRQVL 213
            GLD++MSLDSTVFLFLLV LIYG S+C+ G  PRLP+VAEAADRQVL
Sbjct: 162 FGLDVVMSLDSTVFLFLLVSLIYGFSACLFGLTPRLPLVAEAADRQVL 209

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	213
TAIR|locus:2162167	209	Tic20-V "AT5G55710" [Arabidops	0.769	0.784	0.652	1.7e-52
TAIR|locus:2043353	208	Tic20-II "translocon at the in	0.755	0.774	0.359	2.6e-24

TAIR|locus:2162167 Tic20-V "AT5G55710" [Arabidopsis thaliana (taxid:3702)]

 Score = 544 (196.6 bits), Expect = 1.7e-52, P = 1.7e-52
 Identities = 107/164 (65%), Positives = 122/164 (74%)

Query:    50 TITTKSKKSDSADYPDRLISAICYFYPFFDGIQYGKYVITQFTXXXXXXXXXXXAIKVFK 109
             T+  +SK  DS D  DR+ISA+CYFYPFFDGIQYGK++ITQ+            AI+ FK
Sbjct:    46 TLVLQSKGDDSVDASDRIISAVCYFYPFFDGIQYGKFIITQYQPFQILIQPLFPAIRAFK 105

Query:   110 SFPFNGXXXXXXXXXXXXRNTNFSRYVRFNTMQAIVLDVLLIFPDLFERTFNAGEGIGLD 169
             SFPFNG            RN NFSRYVRFNTMQAIVLDVLLIFPDL ER+FN  +G GLD
Sbjct:   106 SFPFNGFLIFITLYFVVVRNPNFSRYVRFNTMQAIVLDVLLIFPDLLERSFNPRDGFGLD 165

Query:   170 LMMSLDSTVFLFLLVCLIYGSSSCMLGQVPRLPIVAEAADRQVL 213
             ++MSLDSTVFLFLLV LIYG S+C+ G  PRLP+VAEAADRQVL
Sbjct:   166 VVMSLDSTVFLFLLVSLIYGFSACLFGLTPRLPLVAEAADRQVL 209

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

GO:0009507 "chloroplast" evidence=ISM;IDA

GO:0009535 "chloroplast thylakoid membrane" evidence=IDA

GO:0009579 "thylakoid" evidence=IDA

TAIR|locus:2043353 Tic20-II "translocon at the inner envelope membrane of chloroplasts 20-II" [Arabidopsis thaliana (taxid:3702)]

 Score = 278 (102.9 bits), Expect = 2.6e-24, P = 2.6e-24
 Identities = 59/164 (35%), Positives = 91/164 (55%)

Query:    51 ITTKSKKSDSADYPDRLISAICYFYPFFDGIQYGKYVITQFTXXXXXXXXXXXAIKVFKS 110
             +TT++  + +    +R+IS   Y  PFF+ +QYG+++  Q+             + +++S
Sbjct:    46 LTTRASYTPTPA-TERVISIASYALPFFNSLQYGRFLFAQYPRLGLLFEPIFPILNLYRS 104

Query:   111 FPFNGXXXXXXXXXXXXRNTNFSRYVRFNTMQAIVLDVLLIFPDLFERTFNAGEG--IGL 168
              P+              RNT+FSRYVRFN MQA+ LDVLL  P L  R  + G+G   G+
Sbjct:   105 VPYASFVAFFGLYLGVVRNTSFSRYVRFNAMQAVTLDVLLAVPVLLTRILDPGQGGGFGM 164

Query:   169 DLMMSLDSTVFLFLLVCLIYGSSSCMLGQVPRLPIVAEAADRQV 212
               MM   + VF+F  +C +YG  S +LG+ P +P VA+AA RQ+
Sbjct:   165 KAMMWGHTGVFVFSFMCFVYGVVSSLLGKTPYIPFVADAAGRQL 208


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.327   0.140   0.421    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      213       177   0.00084  109 3  11 22  0.47    31
                                                     31  0.50    34


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  2
  No. of states in DFA:  560 (60 KB)
  Total size of DFA:  142 KB (2088 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  13.66u 0.09s 13.75t   Elapsed:  00:00:01
  Total cpu time:  13.66u 0.09s 13.75t   Elapsed:  00:00:01
  Start:  Fri May 10 03:07:11 2013   End:  Fri May 10 03:07:12 2013

GO:0009507 "chloroplast" evidence=ISM;IDA

GO:0009941 "chloroplast envelope" evidence=IDA

GO:0005739 "mitochondrion" evidence=IDA

GO:0009536 "plastid" evidence=IDA

GO:0009706 "chloroplast inner membrane" evidence=IDA

GO:0010207 "photosystem II assembly" evidence=RCA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q9FM67	TI205_ARATH	No assigned EC number	0.7440	0.7887	0.8038	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	GSVIVG00033373001	SubName- Full=Chromosome chr19 scaffold_66, whole genome shotgun sequence; (208 aa)
		(Vitis vinifera)
Predicted Functional Partners:
	GSVIVG00028499001	RecName- Full=Photosystem II reaction center psb28 protein; (179 aa)			•	•			•		0.553
	GSVIVG00037015001	SubName- Full=Chromosome chr1 scaffold_84, whole genome shotgun sequence; (198 aa)			•	•					0.545
	GSVIVG00023239001	SubName- Full=Chromosome chr8 scaffold_29, whole genome shotgun sequence; (219 aa)			•	•					0.536
	GSVIVG00003429001	SubName- Full=Chromosome undetermined scaffold_143, whole genome shotgun sequence; (182 aa)			•				•		0.532
	GSVIVG00023910001	SubName- Full=Chromosome chr6 scaffold_3, whole genome shotgun sequence; (216 aa)			•	•					0.529
	GSVIVG00025097001	SubName- Full=Putative uncharacterized protein (Chromosome chr4 scaffold_32, whole genome shotg [...] (221 aa)			•	•					0.521
	GSVIVG00026057001	SubName- Full=Chromosome chr12 scaffold_36, whole genome shotgun sequence; (168 aa)			•				•		0.515
	GSVIVG00035532001	SubName- Full=Chromosome undetermined scaffold_79, whole genome shotgun sequence; (221 aa)			•				•		0.513
	GSVIVG00029202001	SubName- Full=Chromosome chr12 scaffold_47, whole genome shotgun sequence; (297 aa)			•	•					0.510
	GSVIVG00028771001	SubName- Full=Chromosome chr13 scaffold_45, whole genome shotgun sequence; (378 aa)			•	•					0.509

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	213
TIGR00994	267	3a0901s05TIC20 chloroplast protein import componen	100.0
COG4818	105	Predicted membrane protein [Function unknown]	99.85
PF09685	109	Tic20: Tic20-like protein; InterPro: IPR019109 Thi	98.87

>TIGR00994 3a0901s05TIC20 chloroplast protein import component, Tic20 family

Probab=100.00  E-value=9.4e-49  Score=343.89  Aligned_cols=156  Identities=18%  Similarity=0.233  Sum_probs=135.2

Q ss_pred             CCCCCChhhHHHHHHHHHhhhhhhhhhhHHHHhhchhhHHhHhhhhhHHHHhhcCChhH-HHHHHHHHHHhhccCCCCcc
Q 028111           57 KSDSADYPDRLISAICYFYPFFDGIQYGKYVITQFTPIQLLIQPLIPAIKVFKSFPFNG-FLVFLTLYFVVVRNTNFSRY  135 (213)
Q Consensus        57 ~~~~~~~~~R~lA~LpYlLPL~d~l~fg~~l~~~fP~l~~l~~pl~Pi~~ly~s~Pf~~-li~Ff~lyl~VVRN~~~s~F  135 (213)
                      ..+||+||||++||+||++||+|+++||+++++|||.++.+..|+.|++.+|+++||++ +++||++|++||||||+|||
T Consensus       109 ~~~kp~~w~RilA~LpYLLPL~dal~fg~~lf~qfP~L~~l~~pl~Pl~~i~~~lPf~~~lv~Ff~Lyl~VVRN~~iphF  188 (267)
T TIGR00994       109 MTEKPRWWWRTLACVPYLIPLHISWMYADTAYHLHPFLEKFDAITYPFLGAIGRLPTWFLMAYFLLAYMWVVRRKEWPHF  188 (267)
T ss_pred             cccCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHChHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHhcCCCcchh
Confidence            56899999999999999999999999999999999999999999999999999999998 66677999999999999999


Q ss_pred             hhhHHHHHHHHHHHHHHHHHHHHhhccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcchhHHHhhhhC
Q 028111          136 VRFNTMQAIVLDVLLIFPDLFERTFNAGEGIGLDLMMSLDSTVFLFLLVCLIYGSSSCMLGQVPRLPIVAEAADRQVL  213 (213)
Q Consensus       136 VRFnaMQAILLdI~L~l~~li~~~fip~~G~gl~~~~~~~n~ifl~~l~~~iy~~~~al~G~y~~IP~IseAA~~Qv~  213 (213)
                      +|||+||||||||++++++++.+++....+||. +...++..++...+..+++|++||++|+|+|||+||||||+|+.
T Consensus       189 IRFNtMQAILLDI~L~l~g~v~~~lp~~~~~g~-~~~~ifl~vl~~~ifsviqcircAL~G~YaeIP~ISdAAymQi~  265 (267)
T TIGR00994       189 FRFHMMMGMLLEIALQVIGCVSRWFPLIHYWGK-FGMYYWTAIGFTYLFTLLECIRCALAGMYADVPFMCDAAYIQIP  265 (267)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhH-HHHHHHHHHHHHHHHHHHHHHHHHhCCCcCCCchHHHHHHhhcc
Confidence            999999999999999999999998633344452 33444444444555566666777777999999999999999973

Two families of proteins are involved in the chloroplast envelope import appartus.They are the three proteins of the outer membrane (TOC) and four proteins in the inner membrane (TIC). This family is specific for the Tic20 protein.

>COG4818 Predicted membrane protein [Function unknown]

Probab=99.85  E-value=2.8e-21  Score=148.37  Aligned_cols=99  Identities=22%  Similarity=0.328  Sum_probs=86.4

Q ss_pred             hhHHHHHHHHHhhhhhhhhhhHHHHhhchhhHHhHhhhhhHHHHhhcCChhHHHHHHHHHHHhhccCCCCcchhhHHHHH
Q 028111           64 PDRLISAICYFYPFFDGIQYGKYVITQFTPIQLLIQPLIPAIKVFKSFPFNGFLVFLTLYFVVVRNTNFSRYVRFNTMQA  143 (213)
Q Consensus        64 ~~R~lA~LpYlLPL~d~l~fg~~l~~~fP~l~~l~~pl~Pi~~ly~s~Pf~~li~Ff~lyl~VVRN~~~s~FVRFnaMQA  143 (213)
                      .|++-+++||++-++.|+-|                                    +.       -++.|+|||||||||
T Consensus         2 ~eNiegaLCY~lgwitGllF------------------------------------ll-------lEre~~FVrFHAmQS   38 (105)
T COG4818           2 KENIEGALCYLLGWITGLLF------------------------------------LL-------LERESKFVRFHAMQS   38 (105)
T ss_pred             cchhhhHHHHHHHHHHHHHH------------------------------------HH-------hhccCcceeehhHHH
Confidence            46788999999999888766                                    33       478999999999999


Q ss_pred             HHHHHHHHHHHHHHHhhccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcchhHHHhhhh
Q 028111          144 IVLDVLLIFPDLFERTFNAGEGIGLDLMMSLDSTVFLFLLVCLIYGSSSCMLGQVPRLPIVAEAADRQV  212 (213)
Q Consensus       144 ILLdI~L~l~~li~~~fip~~G~gl~~~~~~~n~ifl~~l~~~iy~~~~al~G~y~~IP~IseAA~~Qv  212 (213)
                      .+++..+.++.++..+ +|..||-+      +..+.++.+.+|+.||++|++|+..|+|++||.||+|+
T Consensus        39 ~ltF~~l~~l~ill~~-iP~Ig~ll------s~~v~l~a~iLwlv~mykAyrGe~fKlPv~GdiAe~~~  100 (105)
T COG4818          39 FLTFLGLWLLIILLAF-IPYIGWLL------SGLVGLAAFILWLVCMYKAYRGERFKLPVVGDIAEQQI  100 (105)
T ss_pred             HHHHHHHHHHHHHHHH-hhhhHHHH------HhHHHHHHHHHHHHHHHHHHcCCeecCceechHHHHHH
Confidence            9999999999998885 89888754      44566778889999999999999999999999999985

>PF09685 Tic20: Tic20-like protein; InterPro: IPR019109 This entry represents a group of uncharacterised conserved proteins including a chloroplast protein import component called Tic20

Probab=98.87  E-value=3.3e-08  Score=75.09  Aligned_cols=79  Identities=23%  Similarity=0.332  Sum_probs=56.8

Q ss_pred             hhccCCCCcchhhHHHHHHHHHHHHHHHHHHHHhhcccc--chhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcc
Q 028111          126 VVRNTNFSRYVRFNTMQAIVLDVLLIFPDLFERTFNAGE--GIGLDLMMSLDSTVFLFLLVCLIYGSSSCMLGQVPRLPI  203 (213)
Q Consensus       126 VVRN~~~s~FVRFnaMQAILLdI~L~l~~li~~~fip~~--G~gl~~~~~~~n~ifl~~l~~~iy~~~~al~G~y~~IP~  203 (213)
                      ++|+++ |+|+|+|+.||+...+...+..++........  +.+  ....+.-.+++..++.+++++++|.+|+..+.|+
T Consensus        28 ~~~k~~-~~~vr~ha~qal~~~i~~~i~~~i~~~l~~~~~~~~~--i~~~~~~~~~l~~~v~~I~~~~~a~~g~~~~~P~  104 (109)
T PF09685_consen   28 IVKKDK-SPFVRFHAKQALNFQITFLIISIILFILSFILIFFIG--IGILLLIVLWLLSLVLSIIGAIKANKGEPYRYPF  104 (109)
T ss_pred             HHcCCC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHCCCeeecCe
Confidence            455555 99999999999999999888887666432111  111  1122333344667888999999999999999999


Q ss_pred             hhHH
Q 028111          204 VAEA  207 (213)
Q Consensus       204 IseA  207 (213)
                      +++.
T Consensus       105 ~~~~  108 (109)
T PF09685_consen  105 IGKF  108 (109)
T ss_pred             eecc
Confidence            8863

Chloroplast function requires the import of nuclear encoded proteins from the cytoplasm across the chloroplast double membrane. This is accomplished by two protein complexes, the Toc complex located at the outer membrane and the Tic complex located at the inner membrane. The Toc complex recognises specific proteins by a cleavable N-terminal sequence and is primarily responsible for translocation through the outer membrane, while the Tic complex translocates the protein through the inner membrane. Tic20 is a core member of the Tic complex and is deeply embedded in the inner envelope membrane. It is thought to function as a protein conducting component of the Tic complex [].

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Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

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Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00