Citrus Sinensis ID: 028136

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210---
Protein Sequence
MAMNSLPLSTLFTALPVSQITQHRQTTTASDAILGSFQIATRRNMSNTLRLYLACIRNTLDAALCLQNFPCQEVERHNKPEVELKTSPELLLNPILICRNEAEKCLIETSINSLRISLKVKQADELENILTKKFLRFLSMRAEAFQVLRRKPVQGYDISFLITNYHCEEMQKHKLIDFIVQFMEDIDKEISELKMSVNTRGRLVATEFLKQFV
Secondary Structure (PSIPRED)
cccccccHHHHHcccccEEEEcccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHccccccccccccccccccEEEEcccccEEEEEEccccEEEEEEEEcccHHHHHHHHHHHHHHHHHHHHcEEEEccccccccEEEEEcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc
Secondary Structure Prediction (SSPRO)
ccccccccEEHHccccccEEcccccccccccHHHccccHHHHHHHHHcHHHHHHHHHHHHHHHcccccccccccccccccHHHHcccHHHEcccEEEEcccccEEEEEEEccEEEEEEEcccccHHHHHHHHHHHHHHHHcccccccEcccccccccEEEEEEHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHcc
Coil and Loop (DISEMBL)
mamnslplstlftalpvsqitqhrqtttasdailGSFQIATRRNMSNTLRLYLACIRNTLDAAlclqnfpcqeverhnkpevelktspelllnpiLICRNEAEKCLIETSINSLRISLKVKQADELENILTKKFLRFLSMRAEAFQVlrrkpvqgydISFLITNYHCEEMQKHKLIDFIVQFMEDIDKEISELKMSVNTRGRLVATEFLKQFV
Flexible Loop (DISEMBL)
MAMNSLPLSTLFTALPVSQITqhrqtttasdaiLGSFQIATRRNMSNTLRLYLACIRNTLDAALCLQNFPCQEVERhnkpevelktspelllnpILICRNEAEKCLIETSINSLRISLKVKQADELENILTKKFLRFLSMRAEAFqvlrrkpvqgyDISFLITNYHCEEMQKHKLIDFIVQFMEDIDKEISELkmsvntrgrlvateflkqfv
Low Complexity Region (SEG)
MAMNSLPLSTLFTALPVSQITQHRQTTTASDAILGSFQIATRRNMSNTLRLYLACIRNTLDAALCLQNFPCQEVERHNKPEVELKTSPELLLNPILICRNEAEKCLIETSINSLRISLKVKQADELENILTKKFLRFLSMRAEAFQVLRRKPVQGYDISFLITNYHCEEMQKHKLIDFIVQFMEDIDKEISELKMSVNTRGRLVATEFLKQFV
Disordered region (IsUnstruct)
*********TLFTALPVSQITQHRQTTTASDAILGSFQIATRRNMSNTLRLYLACIRNTLDAALCLQNFPCQEVERH****VELKTSPELLLNPILICRNEAEKCLIETSINSLRISLKVKQADELENILTKKFLRFLSMRAEAFQVLRRKPVQGYDISFLITNYHCEEMQKHKLIDFIVQFMEDIDKEISELKMSVNTRGRLVATEF*****
Disordered Region (DISOPRED)
******P*STLFTALPVSQIT*************GSFQIATRRNMSNTLRLYLACIRNTLDAALCLQNFPCQEVERHN******KTSPELLLNPILICRNEAEKCLIETSINSLRISLKVKQADELENILTKKFLRFLSMRAEAFQVLRRKPVQGYDISFLITNYHCEEMQKHKLIDFIVQFMEDIDKEISELKMSVNTRGRLVATEFLKQFV
Disordered Region (DISEMBL)
MAMNSLPLSTLFTALPVSQITQHRQTTTASDAILGSFQIATRRNMSNTLRLYLACIRNTLDAALCLQNFPCQEVERHNKPEVELKTSPELLLNPILICRNEAEKCLIETSINSLRISLKVKQADELENILTKKFLRFLSMRAEAFQVLRRKPVQGYDISFLITNYHCEEMQKHKLIDFIVQFMEDIDKEISELKMSVNTRGRLVATEFLKQFV
Disordered Region (DISPRO)
****SLPLSTLFTALPVSQITQHRQTTTASDAILGSFQIATRRNMSNTLRLYLACIRNTLDAALCLQNFPCQEVERHNKPEVELKTSPELLLNPILICRNEAEKCLIETSINSLRISLKVKQADELENILTKKFLRFLSMRAEAFQVLRRKPVQGYDISFLITNYHCEEMQKHKLIDFIVQFMEDIDKEISELKMSVNTRGRLVATEFLKQFV
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
SSSSSSSSSSSSSSSSSSSoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
SSSSSSSSSSSSSSSSSSSSooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MAMNSLPLSTLFTALPVSQITQHRQTTTASDAILGSFQIATRRNMSNTLRLYLACIRNTLDAALCLQNFPCQEVERHNKPEVELKTSPELLLNPILICRNEAEKCLIETSINSLRISLKVKQADELENILTKKFLRFLSMRAEAFQVLRRKPVQGYDISFLITNYHCEEMQKHKLIDFIVQFMEDIDKEISELKMSVNTRGRLVATEFLKQFV
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	213	2.2.26 [Sep-21-2011]
P59999	168	Actin-related protein 2/3	yes	no	0.788	1.0	0.678	2e-64
P59998	168	Actin-related protein 2/3	yes	no	0.788	1.0	0.678	2e-64
Q148J6	168	Actin-related protein 2/3	yes	no	0.788	1.0	0.678	2e-64
O96625	169	Actin-related protein 2/3	yes	no	0.788	0.994	0.666	3e-64
Q92352	168	Actin-related protein 2/3	yes	no	0.788	1.0	0.607	9e-58
P33204	171	Actin-related protein 2/3	yes	no	0.793	0.988	0.617	7e-56
P58798	169	Probable actin-related pr	yes	no	0.788	0.994	0.607	8e-56

>sp|P59999|ARPC4_MOUSE Actin-related protein 2/3 complex subunit 4 OS=Mus musculus GN=Arpc4 PE=1 SV=3

 Score =  245 bits (625), Expect = 2e-64,   Method: Compositional matrix adjust.
 Identities = 114/168 (67%), Positives = 139/168 (82%)

Query: 45  MSNTLRLYLACIRNTLDAALCLQNFPCQEVERHNKPEVELKTSPELLLNPILICRNEAEK 104
           M+ TLR YL+ +R TL AALCL+NF  Q VERHNKPEVE+++S ELLL P+ I RNE EK
Sbjct: 1   MTATLRPYLSAVRATLQAALCLENFSSQVVERHNKPEVEVRSSKELLLQPVTISRNEKEK 60

Query: 105 CLIETSINSLRISLKVKQADELENILTKKFLRFLSMRAEAFQVLRRKPVQGYDISFLITN 164
            LIE SINS+R+S+ VKQADE+E IL  KF+RF+ MRAE F +LRRKPV+GYDISFLITN
Sbjct: 61  VLIEGSINSVRVSIAVKQADEIEKILCHKFMRFMMMRAENFFILRRKPVEGYDISFLITN 120

Query: 165 YHCEEMQKHKLIDFIVQFMEDIDKEISELKMSVNTRGRLVATEFLKQF 212
           +H E+M KHKL+DF++ FME+IDKEISE+K+SVN R R+VA EFLK F
Sbjct: 121 FHTEQMYKHKLVDFVIHFMEEIDKEISEMKLSVNARARIVAEEFLKNF 168

Functions as actin-binding component of the Arp2/3 complex which is involved in regulation of actin polymerization and together with an activating nucleation-promoting factor (NPF) mediates the formation of branched actin networks. Seems to contact the mother actin filament.
Mus musculus (taxid: 10090)

>sp|P59998|ARPC4_HUMAN Actin-related protein 2/3 complex subunit 4 OS=Homo sapiens GN=ARPC4 PE=1 SV=3

 Score =  245 bits (625), Expect = 2e-64,   Method: Compositional matrix adjust.
 Identities = 114/168 (67%), Positives = 139/168 (82%)

Query: 45  MSNTLRLYLACIRNTLDAALCLQNFPCQEVERHNKPEVELKTSPELLLNPILICRNEAEK 104
           M+ TLR YL+ +R TL AALCL+NF  Q VERHNKPEVE+++S ELLL P+ I RNE EK
Sbjct: 1   MTATLRPYLSAVRATLQAALCLENFSSQVVERHNKPEVEVRSSKELLLQPVTISRNEKEK 60

Query: 105 CLIETSINSLRISLKVKQADELENILTKKFLRFLSMRAEAFQVLRRKPVQGYDISFLITN 164
            LIE SINS+R+S+ VKQADE+E IL  KF+RF+ MRAE F +LRRKPV+GYDISFLITN
Sbjct: 61  VLIEGSINSVRVSIAVKQADEIEKILCHKFMRFMMMRAENFFILRRKPVEGYDISFLITN 120

Query: 165 YHCEEMQKHKLIDFIVQFMEDIDKEISELKMSVNTRGRLVATEFLKQF 212
           +H E+M KHKL+DF++ FME+IDKEISE+K+SVN R R+VA EFLK F
Sbjct: 121 FHTEQMYKHKLVDFVIHFMEEIDKEISEMKLSVNARARIVAEEFLKNF 168

Functions as actin-binding component of the Arp2/3 complex which is involved in regulation of actin polymerization and together with an activating nucleation-promoting factor (NPF) mediates the formation of branched actin networks. Seems to contact the mother actin filament.

Homo sapiens (taxid: 9606)

>sp|Q148J6|ARPC4_BOVIN Actin-related protein 2/3 complex subunit 4 OS=Bos taurus GN=ARPC4 PE=1 SV=3

 Score =  245 bits (625), Expect = 2e-64,   Method: Compositional matrix adjust.
 Identities = 114/168 (67%), Positives = 139/168 (82%)

Query: 45  MSNTLRLYLACIRNTLDAALCLQNFPCQEVERHNKPEVELKTSPELLLNPILICRNEAEK 104
           M+ TLR YL+ +R TL AALCL+NF  Q VERHNKPEVE+++S ELLL P+ I RNE EK
Sbjct: 1   MTATLRPYLSAVRATLQAALCLENFSSQVVERHNKPEVEVRSSKELLLQPVTISRNEKEK 60

Query: 105 CLIETSINSLRISLKVKQADELENILTKKFLRFLSMRAEAFQVLRRKPVQGYDISFLITN 164
            LIE SINS+R+S+ VKQADE+E IL  KF+RF+ MRAE F +LRRKPV+GYDISFLITN
Sbjct: 61  VLIEGSINSVRVSIAVKQADEIEKILCHKFMRFMMMRAENFFILRRKPVEGYDISFLITN 120

Query: 165 YHCEEMQKHKLIDFIVQFMEDIDKEISELKMSVNTRGRLVATEFLKQF 212
           +H E+M KHKL+DF++ FME+IDKEISE+K+SVN R R+VA EFLK F
Sbjct: 121 FHTEQMYKHKLVDFVIHFMEEIDKEISEMKLSVNARARIVAEEFLKNF 168

Functions as actin-binding component of the Arp2/3 complex which is involved in regulation of actin polymerization and together with an activating nucleation-promoting factor (NPF) mediates the formation of branched actin networks. Seems to contact the mother actin filament.

Bos taurus (taxid: 9913)

>sp|O96625|ARPC4_DICDI Actin-related protein 2/3 complex subunit 4 OS=Dictyostelium discoideum GN=arcD PE=1 SV=1

 Score =  244 bits (623), Expect = 3e-64,   Method: Compositional matrix adjust.
 Identities = 112/168 (66%), Positives = 142/168 (84%)

Query: 45  MSNTLRLYLACIRNTLDAALCLQNFPCQEVERHNKPEVELKTSPELLLNPILICRNEAEK 104
           MS     YL CIRNTL A++CLQNF  Q VERHNKPEVE+KTS EL+LNP++I RN+ E+
Sbjct: 1   MSTAQVPYLNCIRNTLTASMCLQNFGSQIVERHNKPEVEVKTSKELVLNPVIIARNKNER 60

Query: 105 CLIETSINSLRISLKVKQADELENILTKKFLRFLSMRAEAFQVLRRKPVQGYDISFLITN 164
            LIETSINS+RIS+ +K++DE++ IL KKF+RFL  RAE F +LRRKPV+GYDISFL+TN
Sbjct: 61  VLIETSINSIRISVSIKKSDEVDVILAKKFVRFLQQRAENFIILRRKPVEGYDISFLVTN 120

Query: 165 YHCEEMQKHKLIDFIVQFMEDIDKEISELKMSVNTRGRLVATEFLKQF 212
           +H E M KHKL+DFI+QFMEDID+EIS+LK+++N RGR+VA+E+LK F
Sbjct: 121 FHTENMFKHKLVDFIIQFMEDIDREISDLKLTLNARGRIVASEYLKNF 168

Functions as component of the Arp2/3 complex which is involved in regulation of actin polymerization and together with an activating nucleation-promoting factor (NPF) mediates the formation of branched actin networks. Seems to contact the pointed end of the daughter actin filament. The Arp2/3 complex is involved in organizing the actin system in cell motility and chemotaxis, in phagocytosis and macropinocytosis, at late steps of endosome processing, and in mitosis. In concert with a group of other proteins, the Arp2/3 complex plays a general role in the rapid activation and adaptation of the actin system to its multiple functions.

Dictyostelium discoideum (taxid: 44689)

>sp|Q92352|ARPC4_SCHPO Actin-related protein 2/3 complex subunit 4 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=arc4 PE=1 SV=1

 Score =  223 bits (567), Expect = 9e-58,   Method: Compositional matrix adjust.
 Identities = 102/168 (60%), Positives = 136/168 (80%)

Query: 45  MSNTLRLYLACIRNTLDAALCLQNFPCQEVERHNKPEVELKTSPELLLNPILICRNEAEK 104
           MSNTLR YL  +R+TL A+L L+ F  + VER ++PEVE+  SPE+LL P+++ RNE E+
Sbjct: 1   MSNTLRPYLNAVRSTLTASLALEEFSSEIVERQSQPEVEVGRSPEILLKPLVVSRNEQEQ 60

Query: 105 CLIETSINSLRISLKVKQADELENILTKKFLRFLSMRAEAFQVLRRKPVQGYDISFLITN 164
           CLIE+S+NS+R S+++KQ DE+E IL +KF++FL  RAE+F +LRRKPVQGYDISFLITN
Sbjct: 61  CLIESSVNSVRFSIRIKQVDEIERILVRKFMQFLMGRAESFFILRRKPVQGYDISFLITN 120

Query: 165 YHCEEMQKHKLIDFIVQFMEDIDKEISELKMSVNTRGRLVATEFLKQF 212
           YH EEM KHKL+DFI++FME++D EISE+K+ +N R RLVA  +L  F
Sbjct: 121 YHTEEMLKHKLVDFIIEFMEEVDAEISEMKLFLNGRARLVAETYLSCF 168

Functions as actin-binding component of the Arp2/3 complex which is involved in regulation of actin polymerization and together with an activating nucleation-promoting factor (NPF) mediates the formation of branched actin networks. Seems to contact the mother actin filament.

Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812)

>sp|P33204|ARPC4_YEAST Actin-related protein 2/3 complex subunit 4 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=ARC19 PE=1 SV=2

 Score =  216 bits (551), Expect = 7e-56,   Method: Compositional matrix adjust.
 Identities = 105/170 (61%), Positives = 129/170 (75%), Gaps = 1/170 (0%)

Query: 45  MSNTLRLYLACIRNTLDAALCLQNFPCQEVERHNKPEVEL-KTSPELLLNPILICRNEAE 103
           MS +LR YL  +R +L+AAL L NF  QEVERHN+PEVE+  TS ELLL P+ I RNE E
Sbjct: 1   MSQSLRPYLTAVRYSLEAALTLSNFSSQEVERHNRPEVEVPNTSAELLLQPMHISRNENE 60

Query: 104 KCLIETSINSLRISLKVKQADELENILTKKFLRFLSMRAEAFQVLRRKPVQGYDISFLIT 163
           + LIE S+NS+R+SL VKQADE+E IL  KF RFL  RAEAF +LRR P+ GY ISFLIT
Sbjct: 61  QVLIEPSVNSVRMSLMVKQADEIEQILVHKFTRFLEQRAEAFYILRRVPIPGYSISFLIT 120

Query: 164 NYHCEEMQKHKLIDFIVQFMEDIDKEISELKMSVNTRGRLVATEFLKQFV 213
           N H E M+  KL+DFI++FMED+DKEISE+K+ +N R R VA  +L +FV
Sbjct: 121 NKHTESMKTGKLVDFIIEFMEDVDKEISEIKLFLNARARFVAEAYLDEFV 170

Functions as actin-binding component of the Arp2/3 complex which is involved in regulation of actin polymerization and together with an activating nucleation-promoting factor (NPF) mediates the formation of branched actin networks. Seems to contact the mother actin filament.

Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (taxid: 559292)

>sp|P58798|ARPC4_CAEEL Probable actin-related protein 2/3 complex subunit 4 OS=Caenorhabditis elegans GN=arx-6 PE=3 SV=1

 Score =  216 bits (550), Expect = 8e-56,   Method: Compositional matrix adjust.
 Identities = 102/168 (60%), Positives = 133/168 (79%)

Query: 45  MSNTLRLYLACIRNTLDAALCLQNFPCQEVERHNKPEVELKTSPELLLNPILICRNEAEK 104
           MS TL+ YL  +R+TL AALCL+ F  Q VERHNKPEVE++TS ELL+ P+++ RN+ E+
Sbjct: 1   MSATLQPYLEAVRHTLQAALCLEQFSSQVVERHNKPEVEVQTSKELLMTPVVVARNKQER 60

Query: 105 CLIETSINSLRISLKVKQADELENILTKKFLRFLSMRAEAFQVLRRKPVQGYDISFLITN 164
            LIE S+NS+RIS+ +KQ+DE+E IL  KF RF+  RA+ F VLRRKP+ GYDISFLIT 
Sbjct: 61  VLIEPSVNSVRISIAIKQSDEIEKILCHKFTRFMCQRADNFFVLRRKPLPGYDISFLITA 120

Query: 165 YHCEEMQKHKLIDFIVQFMEDIDKEISELKMSVNTRGRLVATEFLKQF 212
            H E M KHKL+DF++ FM++IDKEISE+K+S+N R R+ A EFLK+F
Sbjct: 121 SHTEAMFKHKLVDFLLHFMQEIDKEISEMKLSLNARARVSAEEFLKRF 168

Functions as actin-binding component of the Arp2/3 complex which is involved in regulation of actin polymerization and together with an activating nucleation-promoting factor (NPF) mediates the formation of branched actin networks. Seems to contact the mother actin filament.

Caenorhabditis elegans (taxid: 6239)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	213
351726864	169	uncharacterized protein LOC100527736 [Gl	0.793	1.0	0.964	3e-91
356512471	169	PREDICTED: actin-related protein 2/3 com	0.793	1.0	0.958	1e-90
255554038	169	arp2/3 complex 20 kD subunit, putative [	0.793	1.0	0.952	2e-89
357518763	170	Actin-related protein 2/3 complex subuni	0.788	0.988	0.958	2e-89
225433600	169	PREDICTED: actin-related protein 2/3 com	0.793	1.0	0.934	7e-89
115456583	169	Os03g0848300 [Oryza sativa Japonica Grou	0.793	1.0	0.928	9e-89
357121269	169	PREDICTED: actin-related protein 2/3 com	0.793	1.0	0.928	9e-89
343172952	169	actin-like protein 2/3 complex subunit 4	0.793	1.0	0.934	2e-88
298205159	194	unnamed protein product [Vitis vinifera]	0.798	0.876	0.923	3e-88
242037415	171	hypothetical protein SORBIDRAFT_01g00130	0.788	0.982	0.928	3e-88

>gi|351726864|ref|NP_001236629.1| uncharacterized protein LOC100527736 [Glycine max] gi|255633080|gb|ACU16895.1| unknown [Glycine max]

 Score =  340 bits (871), Expect = 3e-91,   Method: Compositional matrix adjust.
 Identities = 163/169 (96%), Positives = 168/169 (99%)

Query: 45  MSNTLRLYLACIRNTLDAALCLQNFPCQEVERHNKPEVELKTSPELLLNPILICRNEAEK 104
           M+NTLRLYL CIRNTL+AA+CLQNFPCQEVERHNKPEVELKTSPELLLNP+LICRNEAEK
Sbjct: 1   MANTLRLYLTCIRNTLEAAMCLQNFPCQEVERHNKPEVELKTSPELLLNPVLICRNEAEK 60

Query: 105 CLIETSINSLRISLKVKQADELENILTKKFLRFLSMRAEAFQVLRRKPVQGYDISFLITN 164
           CLIETSINSLRISLKVKQADELENILTKKFLRFLSMRAEAFQVLRRKPVQGYDISFLITN
Sbjct: 61  CLIETSINSLRISLKVKQADELENILTKKFLRFLSMRAEAFQVLRRKPVQGYDISFLITN 120

Query: 165 YHCEEMQKHKLIDFIVQFMEDIDKEISELKMSVNTRGRLVATEFLKQFV 213
           YHCEEMQKHKLIDFIVQFMEDIDKEISELKMSVNTRGRLVATEFLKQF+
Sbjct: 121 YHCEEMQKHKLIDFIVQFMEDIDKEISELKMSVNTRGRLVATEFLKQFI 169

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356512471|ref|XP_003524942.1| PREDICTED: actin-related protein 2/3 complex subunit 4-like [Glycine max]

 Score =  338 bits (866), Expect = 1e-90,   Method: Compositional matrix adjust.
 Identities = 162/169 (95%), Positives = 168/169 (99%)

Query: 45  MSNTLRLYLACIRNTLDAALCLQNFPCQEVERHNKPEVELKTSPELLLNPILICRNEAEK 104
           M++TLRLYL CIRNTL+AA+CLQNFPCQEVERHNKPEVELKTSPELLLNP+LICRNEAEK
Sbjct: 1   MASTLRLYLTCIRNTLEAAMCLQNFPCQEVERHNKPEVELKTSPELLLNPVLICRNEAEK 60

Query: 105 CLIETSINSLRISLKVKQADELENILTKKFLRFLSMRAEAFQVLRRKPVQGYDISFLITN 164
           CLIETSINSLRISLKVKQADELENILTKKFLRFLSMRAEAFQVLRRKPVQGYDISFLITN
Sbjct: 61  CLIETSINSLRISLKVKQADELENILTKKFLRFLSMRAEAFQVLRRKPVQGYDISFLITN 120

Query: 165 YHCEEMQKHKLIDFIVQFMEDIDKEISELKMSVNTRGRLVATEFLKQFV 213
           YHCEEMQKHKLIDFIVQFMEDIDKEISELKMSVNTRGRLVATEFLKQF+
Sbjct: 121 YHCEEMQKHKLIDFIVQFMEDIDKEISELKMSVNTRGRLVATEFLKQFI 169

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255554038|ref|XP_002518059.1| arp2/3 complex 20 kD subunit, putative [Ricinus communis] gi|223542655|gb|EEF44192.1| arp2/3 complex 20 kD subunit, putative [Ricinus communis]

 Score =  334 bits (856), Expect = 2e-89,   Method: Compositional matrix adjust.
 Identities = 161/169 (95%), Positives = 166/169 (98%)

Query: 45  MSNTLRLYLACIRNTLDAALCLQNFPCQEVERHNKPEVELKTSPELLLNPILICRNEAEK 104
           M+N LRLYL CIRNTL+AA+CLQNFPCQEVERHNKPEVELKTSPELLLNPILICRNEAEK
Sbjct: 1   MANPLRLYLTCIRNTLEAAMCLQNFPCQEVERHNKPEVELKTSPELLLNPILICRNEAEK 60

Query: 105 CLIETSINSLRISLKVKQADELENILTKKFLRFLSMRAEAFQVLRRKPVQGYDISFLITN 164
           CLIETSINSLRISLKVKQADELENILTKKFLRFLSMRAEAFQVLRRKP+QGYDISFLITN
Sbjct: 61  CLIETSINSLRISLKVKQADELENILTKKFLRFLSMRAEAFQVLRRKPIQGYDISFLITN 120

Query: 165 YHCEEMQKHKLIDFIVQFMEDIDKEISELKMSVNTRGRLVATEFLKQFV 213
           YHCEEMQK KLIDFIVQFMEDIDKEISELKMSVNTRGRLVATEFLKQF+
Sbjct: 121 YHCEEMQKQKLIDFIVQFMEDIDKEISELKMSVNTRGRLVATEFLKQFI 169

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357518763|ref|XP_003629670.1| Actin-related protein 2/3 complex subunit [Medicago truncatula] gi|355523692|gb|AET04146.1| Actin-related protein 2/3 complex subunit [Medicago truncatula]

 Score =  333 bits (855), Expect = 2e-89,   Method: Compositional matrix adjust.
 Identities = 161/168 (95%), Positives = 165/168 (98%)

Query: 46  SNTLRLYLACIRNTLDAALCLQNFPCQEVERHNKPEVELKTSPELLLNPILICRNEAEKC 105
           S TLRLYL CIRNTLDAA+CLQNFPCQEVERHNKPEVELKTSPELLLNP+LICRNEAEKC
Sbjct: 3   STTLRLYLTCIRNTLDAAMCLQNFPCQEVERHNKPEVELKTSPELLLNPVLICRNEAEKC 62

Query: 106 LIETSINSLRISLKVKQADELENILTKKFLRFLSMRAEAFQVLRRKPVQGYDISFLITNY 165
           LIETSINSLRISLKVKQADELENILTKKFLRFLSMRAEAFQVLRRKPVQGYDISFLITNY
Sbjct: 63  LIETSINSLRISLKVKQADELENILTKKFLRFLSMRAEAFQVLRRKPVQGYDISFLITNY 122

Query: 166 HCEEMQKHKLIDFIVQFMEDIDKEISELKMSVNTRGRLVATEFLKQFV 213
           HCEEMQK KLIDFIVQFMEDI+KEISELKMSVNTRGRLVATEFLKQF+
Sbjct: 123 HCEEMQKQKLIDFIVQFMEDIEKEISELKMSVNTRGRLVATEFLKQFI 170

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225433600|ref|XP_002273132.1| PREDICTED: actin-related protein 2/3 complex subunit 4-like [Vitis vinifera]

 Score =  332 bits (850), Expect = 7e-89,   Method: Compositional matrix adjust.
 Identities = 158/169 (93%), Positives = 166/169 (98%)

Query: 45  MSNTLRLYLACIRNTLDAALCLQNFPCQEVERHNKPEVELKTSPELLLNPILICRNEAEK 104
           M+NT RLY  CIRNTL+AA+CLQNFPCQEVERHNKPEVELKTSPE+LLNP+LICRNEAEK
Sbjct: 1   MANTSRLYFTCIRNTLEAAMCLQNFPCQEVERHNKPEVELKTSPEVLLNPVLICRNEAEK 60

Query: 105 CLIETSINSLRISLKVKQADELENILTKKFLRFLSMRAEAFQVLRRKPVQGYDISFLITN 164
           CLIETSINSLRISLKVKQADELENILTKKFLRFLSMRAEAFQVLRRKPVQGYDISFLITN
Sbjct: 61  CLIETSINSLRISLKVKQADELENILTKKFLRFLSMRAEAFQVLRRKPVQGYDISFLITN 120

Query: 165 YHCEEMQKHKLIDFIVQFMEDIDKEISELKMSVNTRGRLVATEFLKQFV 213
           YHCE+MQKHKLIDFIVQFMEDIDKEISELK+SVNTRGRLVATEFLKQF+
Sbjct: 121 YHCEDMQKHKLIDFIVQFMEDIDKEISELKLSVNTRGRLVATEFLKQFI 169

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|115456583|ref|NP_001051892.1| Os03g0848300 [Oryza sativa Japonica Group] gi|28269392|gb|AAO37935.1| putative actin-related complex protein [Oryza sativa Japonica Group] gi|108712098|gb|ABF99893.1| Actin-related protein 2/3 complex subunit 4, putative, expressed [Oryza sativa Japonica Group] gi|113550363|dbj|BAF13806.1| Os03g0848300 [Oryza sativa Japonica Group] gi|125546442|gb|EAY92581.1| hypothetical protein OsI_14322 [Oryza sativa Indica Group] gi|125588638|gb|EAZ29302.1| hypothetical protein OsJ_13363 [Oryza sativa Japonica Group] gi|149390857|gb|ABR25446.1| actin-related protein 2/3 complex subunit 4 [Oryza sativa Indica Group]

 Score =  332 bits (850), Expect = 9e-89,   Method: Compositional matrix adjust.
 Identities = 157/169 (92%), Positives = 166/169 (98%)

Query: 45  MSNTLRLYLACIRNTLDAALCLQNFPCQEVERHNKPEVELKTSPELLLNPILICRNEAEK 104
           M+NTLRLYL CIRNTL+AA+CLQNFPCQEVERHNKPEVELKTSPELLLNP+LICRNEAEK
Sbjct: 1   MANTLRLYLTCIRNTLEAAMCLQNFPCQEVERHNKPEVELKTSPELLLNPVLICRNEAEK 60

Query: 105 CLIETSINSLRISLKVKQADELENILTKKFLRFLSMRAEAFQVLRRKPVQGYDISFLITN 164
           CLIETSINS+RIS+KVKQADELENIL KKFLRFLSMRAEAFQVLRRKPVQGYDISFLITN
Sbjct: 61  CLIETSINSIRISMKVKQADELENILAKKFLRFLSMRAEAFQVLRRKPVQGYDISFLITN 120

Query: 165 YHCEEMQKHKLIDFIVQFMEDIDKEISELKMSVNTRGRLVATEFLKQFV 213
           YHCE+M KHKLIDFIVQFMEDIDKEISELK+SVNTRGRLVATEFLKQF+
Sbjct: 121 YHCEDMHKHKLIDFIVQFMEDIDKEISELKLSVNTRGRLVATEFLKQFI 169

Source: Oryza sativa Japonica Group

Species: Oryza sativa

Genus: Oryza

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357121269|ref|XP_003562343.1| PREDICTED: actin-related protein 2/3 complex subunit 4-like [Brachypodium distachyon]

 Score =  331 bits (849), Expect = 9e-89,   Method: Compositional matrix adjust.
 Identities = 157/169 (92%), Positives = 166/169 (98%)

Query: 45  MSNTLRLYLACIRNTLDAALCLQNFPCQEVERHNKPEVELKTSPELLLNPILICRNEAEK 104
           M+NTLRLYL CIRNTL+AA+CLQNFPCQEVERHNKPEVELKTSPELLLNP+LICRNEAEK
Sbjct: 1   MANTLRLYLTCIRNTLEAAMCLQNFPCQEVERHNKPEVELKTSPELLLNPVLICRNEAEK 60

Query: 105 CLIETSINSLRISLKVKQADELENILTKKFLRFLSMRAEAFQVLRRKPVQGYDISFLITN 164
           CL+ETSINS+RISLKVKQADELENIL KKFLRFLSMRAEAFQVLRRKPVQGYDISFLITN
Sbjct: 61  CLVETSINSIRISLKVKQADELENILAKKFLRFLSMRAEAFQVLRRKPVQGYDISFLITN 120

Query: 165 YHCEEMQKHKLIDFIVQFMEDIDKEISELKMSVNTRGRLVATEFLKQFV 213
           YHCE+M KHKLIDFIVQFMEDIDKEISELK+SVNTRGRLVATEFLKQF+
Sbjct: 121 YHCEDMHKHKLIDFIVQFMEDIDKEISELKLSVNTRGRLVATEFLKQFI 169

Source: Brachypodium distachyon

Species: Brachypodium distachyon

Genus: Brachypodium

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|343172952|gb|AEL99179.1| actin-like protein 2/3 complex subunit 4, partial [Silene latifolia] gi|343172954|gb|AEL99180.1| actin-like protein 2/3 complex subunit 4, partial [Silene latifolia]

 Score =  331 bits (848), Expect = 2e-88,   Method: Compositional matrix adjust.
 Identities = 158/169 (93%), Positives = 166/169 (98%)

Query: 45  MSNTLRLYLACIRNTLDAALCLQNFPCQEVERHNKPEVELKTSPELLLNPILICRNEAEK 104
           M+NTLRLYL CIRNTL+AA+CLQNFPCQEVERHNKPEVE+KTSPELLLNPILICRNEAEK
Sbjct: 1   MANTLRLYLTCIRNTLEAAMCLQNFPCQEVERHNKPEVEMKTSPELLLNPILICRNEAEK 60

Query: 105 CLIETSINSLRISLKVKQADELENILTKKFLRFLSMRAEAFQVLRRKPVQGYDISFLITN 164
           CLIETSINSLRISLKVKQADELENILTKKFLRFLSMRAEAFQVLRRKPVQGYDISFLITN
Sbjct: 61  CLIETSINSLRISLKVKQADELENILTKKFLRFLSMRAEAFQVLRRKPVQGYDISFLITN 120

Query: 165 YHCEEMQKHKLIDFIVQFMEDIDKEISELKMSVNTRGRLVATEFLKQFV 213
           +HCEEMQK +LIDFIVQFMEDIDKEI ELK+SVNTRGRLVATEFLKQF+
Sbjct: 121 FHCEEMQKQRLIDFIVQFMEDIDKEIGELKLSVNTRGRLVATEFLKQFI 169

Source: Silene latifolia

Species: Silene latifolia

Genus: Silene

Family: Caryophyllaceae

Order: Caryophyllales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|298205159|emb|CBI17218.3| unnamed protein product [Vitis vinifera]

 Score =  330 bits (845), Expect = 3e-88,   Method: Compositional matrix adjust.
 Identities = 157/170 (92%), Positives = 165/170 (97%)

Query: 44  NMSNTLRLYLACIRNTLDAALCLQNFPCQEVERHNKPEVELKTSPELLLNPILICRNEAE 103
             +NT RLY  CIRNTL+AA+CLQNFPCQEVERHNKPEVELKTSPE+LLNP+LICRNEAE
Sbjct: 25  GFANTSRLYFTCIRNTLEAAMCLQNFPCQEVERHNKPEVELKTSPEVLLNPVLICRNEAE 84

Query: 104 KCLIETSINSLRISLKVKQADELENILTKKFLRFLSMRAEAFQVLRRKPVQGYDISFLIT 163
           KCLIETSINSLRISLKVKQADELENILTKKFLRFLSMRAEAFQVLRRKPVQGYDISFLIT
Sbjct: 85  KCLIETSINSLRISLKVKQADELENILTKKFLRFLSMRAEAFQVLRRKPVQGYDISFLIT 144

Query: 164 NYHCEEMQKHKLIDFIVQFMEDIDKEISELKMSVNTRGRLVATEFLKQFV 213
           NYHCE+MQKHKLIDFIVQFMEDIDKEISELK+SVNTRGRLVATEFLKQF+
Sbjct: 145 NYHCEDMQKHKLIDFIVQFMEDIDKEISELKLSVNTRGRLVATEFLKQFI 194

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|242037415|ref|XP_002466102.1| hypothetical protein SORBIDRAFT_01g001300 [Sorghum bicolor] gi|241919956|gb|EER93100.1| hypothetical protein SORBIDRAFT_01g001300 [Sorghum bicolor]

 Score =  330 bits (845), Expect = 3e-88,   Method: Compositional matrix adjust.
 Identities = 156/168 (92%), Positives = 165/168 (98%)

Query: 46  SNTLRLYLACIRNTLDAALCLQNFPCQEVERHNKPEVELKTSPELLLNPILICRNEAEKC 105
           +NTLRLYL CIRNTL+AA+CLQNFPCQEVERHNKPEVELKTSPELLLNP+LICRNEAEKC
Sbjct: 4   ANTLRLYLTCIRNTLEAAMCLQNFPCQEVERHNKPEVELKTSPELLLNPVLICRNEAEKC 63

Query: 106 LIETSINSLRISLKVKQADELENILTKKFLRFLSMRAEAFQVLRRKPVQGYDISFLITNY 165
           LIETSINS+RIS+KVKQADELENIL KKFLRFLSMRAEAFQVLRRKPVQGYDISFLITNY
Sbjct: 64  LIETSINSIRISMKVKQADELENILAKKFLRFLSMRAEAFQVLRRKPVQGYDISFLITNY 123

Query: 166 HCEEMQKHKLIDFIVQFMEDIDKEISELKMSVNTRGRLVATEFLKQFV 213
           HCE+M KHKLIDFIVQFMEDIDKEISELK+SVNTRGRLVATEFLKQF+
Sbjct: 124 HCEDMHKHKLIDFIVQFMEDIDKEISELKLSVNTRGRLVATEFLKQFI 171

Source: Sorghum bicolor

Species: Sorghum bicolor

Genus: Sorghum

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	213
DICTYBASE|DDB_G0269102	169	arcD "actin-related protein 2/	0.788	0.994	0.666	5.1e-58
UNIPROTKB|Q148J6	168	ARPC4 "Actin-related protein 2	0.788	1.0	0.678	5.1e-58
UNIPROTKB|P59998	168	ARPC4 "Actin-related protein 2	0.788	1.0	0.678	5.1e-58
MGI|MGI:1915339	168	Arpc4 "actin related protein 2	0.788	1.0	0.678	5.1e-58
RGD|1310096	168	Arpc4 "actin related protein 2	0.788	1.0	0.678	5.1e-58
UNIPROTKB|F1SQE6	167	ARPC4 "Uncharacterized protein	0.774	0.988	0.684	1.4e-57
UNIPROTKB|F8WCF6	181	ARPC4 "Actin-related protein 2	0.779	0.917	0.680	2.2e-57
ZFIN|ZDB-GENE-010724-9	193	arpc4 "actin related protein 2	0.774	0.854	0.678	3.6e-57
UNIPROTKB|E2QWU0	167	ARPC4 "Uncharacterized protein	0.765	0.976	0.687	5.9e-57
FB|FBgn0031781	168	Arpc4 "Actin-related protein 2	0.788	1.0	0.630	1.4e-55

DICTYBASE|DDB_G0269102 arcD "actin-related protein 2/3 complex, subunit 4" [Dictyostelium discoideum (taxid:44689)]

 Score = 596 (214.9 bits), Expect = 5.1e-58, P = 5.1e-58
 Identities = 112/168 (66%), Positives = 142/168 (84%)

Query:    45 MSNTLRLYLACIRNTLDAALCLQNFPCQEVERHNKPEVELKTSPELLLNPILICRNEAEK 104
             MS     YL CIRNTL A++CLQNF  Q VERHNKPEVE+KTS EL+LNP++I RN+ E+
Sbjct:     1 MSTAQVPYLNCIRNTLTASMCLQNFGSQIVERHNKPEVEVKTSKELVLNPVIIARNKNER 60

Query:   105 CLIETSINSLRISLKVKQADELENILTKKFLRFLSMRAEAFQVLRRKPVQGYDISFLITN 164
              LIETSINS+RIS+ +K++DE++ IL KKF+RFL  RAE F +LRRKPV+GYDISFL+TN
Sbjct:    61 VLIETSINSIRISVSIKKSDEVDVILAKKFVRFLQQRAENFIILRRKPVEGYDISFLVTN 120

Query:   165 YHCEEMQKHKLIDFIVQFMEDIDKEISELKMSVNTRGRLVATEFLKQF 212
             +H E M KHKL+DFI+QFMEDID+EIS+LK+++N RGR+VA+E+LK F
Sbjct:   121 FHTENMFKHKLVDFIIQFMEDIDREISDLKLTLNARGRIVASEYLKNF 168

GO:0030670 "phagocytic vesicle membrane" evidence=IDA

GO:0006909 "phagocytosis" evidence=IEP

GO:0006887 "exocytosis" evidence=IEP

GO:0031982 "vesicle" evidence=IDA

GO:0005885 "Arp2/3 protein complex" evidence=IEA;IDA

GO:0030864 "cortical actin cytoskeleton" evidence=IC

GO:0030175 "filopodium" evidence=IC

GO:0051015 "actin filament binding" evidence=TAS

GO:0045335 "phagocytic vesicle" evidence=TAS

GO:0045010 "actin nucleation" evidence=TAS

GO:0030041 "actin filament polymerization" evidence=IEA;TAS

GO:0006928 "cellular component movement" evidence=TAS

GO:0031252 "cell leading edge" evidence=IDA

GO:0031143 "pseudopodium" evidence=IEA;IDA

GO:0034314 "Arp2/3 complex-mediated actin nucleation" evidence=IEA

GO:0005856 "cytoskeleton" evidence=IEA

GO:0042995 "cell projection" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0003779 "actin binding" evidence=IEA

GO:0005938 "cell cortex" evidence=IEA

GO:0005829 "cytosol" evidence=IEA

GO:0005905 "coated pit" evidence=IDA

GO:0044351 "macropinocytosis" evidence=RCA

UNIPROTKB|Q148J6 ARPC4 "Actin-related protein 2/3 complex subunit 4" [Bos taurus (taxid:9913)]

 Score = 596 (214.9 bits), Expect = 5.1e-58, P = 5.1e-58
 Identities = 114/168 (67%), Positives = 139/168 (82%)

Query:    45 MSNTLRLYLACIRNTLDAALCLQNFPCQEVERHNKPEVELKTSPELLLNPILICRNEAEK 104
             M+ TLR YL+ +R TL AALCL+NF  Q VERHNKPEVE+++S ELLL P+ I RNE EK
Sbjct:     1 MTATLRPYLSAVRATLQAALCLENFSSQVVERHNKPEVEVRSSKELLLQPVTISRNEKEK 60

Query:   105 CLIETSINSLRISLKVKQADELENILTKKFLRFLSMRAEAFQVLRRKPVQGYDISFLITN 164
              LIE SINS+R+S+ VKQADE+E IL  KF+RF+ MRAE F +LRRKPV+GYDISFLITN
Sbjct:    61 VLIEGSINSVRVSIAVKQADEIEKILCHKFMRFMMMRAENFFILRRKPVEGYDISFLITN 120

Query:   165 YHCEEMQKHKLIDFIVQFMEDIDKEISELKMSVNTRGRLVATEFLKQF 212
             +H E+M KHKL+DF++ FME+IDKEISE+K+SVN R R+VA EFLK F
Sbjct:   121 FHTEQMYKHKLVDFVIHFMEEIDKEISEMKLSVNARARIVAEEFLKNF 168

GO:0042995 "cell projection" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0003779 "actin binding" evidence=IEA

GO:0034314 "Arp2/3 complex-mediated actin nucleation" evidence=IEA

GO:0030041 "actin filament polymerization" evidence=IEA

GO:0005885 "Arp2/3 protein complex" evidence=IEA

UNIPROTKB|P59998 ARPC4 "Actin-related protein 2/3 complex subunit 4" [Homo sapiens (taxid:9606)]

 Score = 596 (214.9 bits), Expect = 5.1e-58, P = 5.1e-58
 Identities = 114/168 (67%), Positives = 139/168 (82%)

Query:    45 MSNTLRLYLACIRNTLDAALCLQNFPCQEVERHNKPEVELKTSPELLLNPILICRNEAEK 104
             M+ TLR YL+ +R TL AALCL+NF  Q VERHNKPEVE+++S ELLL P+ I RNE EK
Sbjct:     1 MTATLRPYLSAVRATLQAALCLENFSSQVVERHNKPEVEVRSSKELLLQPVTISRNEKEK 60

Query:   105 CLIETSINSLRISLKVKQADELENILTKKFLRFLSMRAEAFQVLRRKPVQGYDISFLITN 164
              LIE SINS+R+S+ VKQADE+E IL  KF+RF+ MRAE F +LRRKPV+GYDISFLITN
Sbjct:    61 VLIEGSINSVRVSIAVKQADEIEKILCHKFMRFMMMRAENFFILRRKPVEGYDISFLITN 120

Query:   165 YHCEEMQKHKLIDFIVQFMEDIDKEISELKMSVNTRGRLVATEFLKQF 212
             +H E+M KHKL+DF++ FME+IDKEISE+K+SVN R R+VA EFLK F
Sbjct:   121 FHTEQMYKHKLVDFVIHFMEEIDKEISEMKLSVNARARIVAEEFLKNF 168

GO:0030041 "actin filament polymerization" evidence=IEA

GO:0034314 "Arp2/3 complex-mediated actin nucleation" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0042995 "cell projection" evidence=IEA

GO:0005885 "Arp2/3 protein complex" evidence=IDA

GO:0030674 "protein binding, bridging" evidence=IPI

GO:0051015 "actin filament binding" evidence=NAS

GO:0045010 "actin nucleation" evidence=NAS

GO:0005515 "protein binding" evidence=IPI

MGI|MGI:1915339 Arpc4 "actin related protein 2/3 complex, subunit 4" [Mus musculus (taxid:10090)]

 Score = 596 (214.9 bits), Expect = 5.1e-58, P = 5.1e-58
 Identities = 114/168 (67%), Positives = 139/168 (82%)

Query:    45 MSNTLRLYLACIRNTLDAALCLQNFPCQEVERHNKPEVELKTSPELLLNPILICRNEAEK 104
             M+ TLR YL+ +R TL AALCL+NF  Q VERHNKPEVE+++S ELLL P+ I RNE EK
Sbjct:     1 MTATLRPYLSAVRATLQAALCLENFSSQVVERHNKPEVEVRSSKELLLQPVTISRNEKEK 60

Query:   105 CLIETSINSLRISLKVKQADELENILTKKFLRFLSMRAEAFQVLRRKPVQGYDISFLITN 164
              LIE SINS+R+S+ VKQADE+E IL  KF+RF+ MRAE F +LRRKPV+GYDISFLITN
Sbjct:    61 VLIEGSINSVRVSIAVKQADEIEKILCHKFMRFMMMRAENFFILRRKPVEGYDISFLITN 120

Query:   165 YHCEEMQKHKLIDFIVQFMEDIDKEISELKMSVNTRGRLVATEFLKQF 212
             +H E+M KHKL+DF++ FME+IDKEISE+K+SVN R R+VA EFLK F
Sbjct:   121 FHTEQMYKHKLVDFVIHFMEEIDKEISEMKLSVNARARIVAEEFLKNF 168

GO:0003674 "molecular_function" evidence=ND

GO:0003779 "actin binding" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0005856 "cytoskeleton" evidence=IEA

GO:0005885 "Arp2/3 protein complex" evidence=ISO;TAS

GO:0008150 "biological_process" evidence=ND

GO:0030041 "actin filament polymerization" evidence=IEA

GO:0034314 "Arp2/3 complex-mediated actin nucleation" evidence=IEA

GO:0042995 "cell projection" evidence=IEA

RGD|1310096 Arpc4 "actin related protein 2/3 complex, subunit 4" [Rattus norvegicus (taxid:10116)]

 Score = 596 (214.9 bits), Expect = 5.1e-58, P = 5.1e-58
 Identities = 114/168 (67%), Positives = 139/168 (82%)

Query:    45 MSNTLRLYLACIRNTLDAALCLQNFPCQEVERHNKPEVELKTSPELLLNPILICRNEAEK 104
             M+ TLR YL+ +R TL AALCL+NF  Q VERHNKPEVE+++S ELLL P+ I RNE EK
Sbjct:     1 MTATLRPYLSAVRATLQAALCLENFSSQVVERHNKPEVEVRSSKELLLQPVTISRNEKEK 60

Query:   105 CLIETSINSLRISLKVKQADELENILTKKFLRFLSMRAEAFQVLRRKPVQGYDISFLITN 164
              LIE SINS+R+S+ VKQADE+E IL  KF+RF+ MRAE F +LRRKPV+GYDISFLITN
Sbjct:    61 VLIEGSINSVRVSIAVKQADEIEKILCHKFMRFMMMRAENFFILRRKPVEGYDISFLITN 120

Query:   165 YHCEEMQKHKLIDFIVQFMEDIDKEISELKMSVNTRGRLVATEFLKQF 212
             +H E+M KHKL+DF++ FME+IDKEISE+K+SVN R R+VA EFLK F
Sbjct:   121 FHTEQMYKHKLVDFVIHFMEEIDKEISEMKLSVNARARIVAEEFLKNF 168

GO:0005885 "Arp2/3 protein complex" evidence=IEA

GO:0030041 "actin filament polymerization" evidence=IEA

GO:0034314 "Arp2/3 complex-mediated actin nucleation" evidence=IEA

UNIPROTKB|F1SQE6 ARPC4 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 592 (213.5 bits), Expect = 1.4e-57, P = 1.4e-57
 Identities = 113/165 (68%), Positives = 137/165 (83%)

Query:    48 TLRLYLACIRNTLDAALCLQNFPCQEVERHNKPEVELKTSPELLLNPILICRNEAEKCLI 107
             TLR YL+ +R TL AALCL+NF  Q VERHNKPEVE+++S ELLL P+ I RNE EK LI
Sbjct:     3 TLRPYLSAVRATLQAALCLENFSSQVVERHNKPEVEVRSSKELLLQPVTISRNEKEKVLI 62

Query:   108 ETSINSLRISLKVKQADELENILTKKFLRFLSMRAEAFQVLRRKPVQGYDISFLITNYHC 167
             E SINS+R+S+ VKQADE+E IL  KF+RF+ MRAE F +LRRKPV+GYDISFLITN+H 
Sbjct:    63 EGSINSVRVSIAVKQADEIEKILCHKFMRFMMMRAENFFILRRKPVEGYDISFLITNFHT 122

Query:   168 EEMQKHKLIDFIVQFMEDIDKEISELKMSVNTRGRLVATEFLKQF 212
             E+M KHKL+DF++ FME+IDKEISE+K+SVN R R+VA EFLK F
Sbjct:   123 EQMYKHKLVDFVIHFMEEIDKEISEMKLSVNARARIVAEEFLKNF 167

GO:0034314 "Arp2/3 complex-mediated actin nucleation" evidence=IEA

GO:0030041 "actin filament polymerization" evidence=IEA

GO:0005885 "Arp2/3 protein complex" evidence=IEA

UNIPROTKB|F8WCF6 ARPC4 "Actin-related protein 2/3 complex subunit 4" [Homo sapiens (taxid:9606)]

 Score = 590 (212.7 bits), Expect = 2.2e-57, P = 2.2e-57
 Identities = 113/166 (68%), Positives = 138/166 (83%)

Query:    45 MSNTLRLYLACIRNTLDAALCLQNFPCQEVERHNKPEVELKTSPELLLNPILICRNEAEK 104
             M+ TLR YL+ +R TL AALCL+NF  Q VERHNKPEVE+++S ELLL P+ I RNE EK
Sbjct:     1 MTATLRPYLSAVRATLQAALCLENFSSQVVERHNKPEVEVRSSKELLLQPVTISRNEKEK 60

Query:   105 CLIETSINSLRISLKVKQADELENILTKKFLRFLSMRAEAFQVLRRKPVQGYDISFLITN 164
              LIE SINS+R+S+ VKQADE+E IL  KF+RF+ MRAE F +LRRKPV+GYDISFLITN
Sbjct:    61 VLIEGSINSVRVSIAVKQADEIEKILCHKFMRFMMMRAENFFILRRKPVEGYDISFLITN 120

Query:   165 YHCEEMQKHKLIDFIVQFMEDIDKEISELKMSVNTRGRLVATEFLK 210
             +H E+M KHKL+DF++ FME+IDKEISE+K+SVN R R+VA EFLK
Sbjct:   121 FHTEQMYKHKLVDFVIHFMEEIDKEISEMKLSVNARARIVAEEFLK 166

GO:0005885 "Arp2/3 protein complex" evidence=IEA

GO:0030041 "actin filament polymerization" evidence=IEA

GO:0034314 "Arp2/3 complex-mediated actin nucleation" evidence=IEA

ZFIN|ZDB-GENE-010724-9 arpc4 "actin related protein 2/3 complex, subunit 4" [Danio rerio (taxid:7955)]

 Score = 588 (212.0 bits), Expect = 3.6e-57, P = 3.6e-57
 Identities = 112/165 (67%), Positives = 137/165 (83%)

Query:    48 TLRLYLACIRNTLDAALCLQNFPCQEVERHNKPEVELKTSPELLLNPILICRNEAEKCLI 107
             TLR YL  +R TL AALCL+NF  Q VERHNKPEVE+++S ELLL P++I RN+ EK LI
Sbjct:    29 TLRPYLNAVRATLQAALCLENFSSQVVERHNKPEVEVRSSKELLLQPVVISRNDKEKVLI 88

Query:   108 ETSINSLRISLKVKQADELENILTKKFLRFLSMRAEAFQVLRRKPVQGYDISFLITNYHC 167
             E SINS+R+S+ VKQADE+E IL  KF+RF+ MRAE F +LRRKPV+GYDISFLITN+H 
Sbjct:    89 EGSINSVRVSIAVKQADEIEKILCHKFMRFMMMRAENFFILRRKPVEGYDISFLITNFHT 148

Query:   168 EEMQKHKLIDFIVQFMEDIDKEISELKMSVNTRGRLVATEFLKQF 212
             E+M KHKL+DF++ FME+IDKEISE+K+SVN R R+VA EFLK F
Sbjct:   149 EQMYKHKLVDFVIHFMEEIDKEISEMKLSVNARARIVAEEFLKNF 193

GO:0034314 "Arp2/3 complex-mediated actin nucleation" evidence=IEA

GO:0005856 "cytoskeleton" evidence=IEA

GO:0030041 "actin filament polymerization" evidence=IEA

GO:0005885 "Arp2/3 protein complex" evidence=IEA

UNIPROTKB|E2QWU0 ARPC4 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 586 (211.3 bits), Expect = 5.9e-57, P = 5.9e-57
 Identities = 112/163 (68%), Positives = 136/163 (83%)

Query:    48 TLRLYLACIRNTLDAALCLQNFPCQEVERHNKPEVELKTSPELLLNPILICRNEAEKCLI 107
             TLR YL+ +R TL AALCL+NF  Q VERHNKPEVE+++S ELLL P+ I RNE EK LI
Sbjct:     4 TLRPYLSAVRATLQAALCLENFSSQVVERHNKPEVEVRSSKELLLQPVTISRNEKEKVLI 63

Query:   108 ETSINSLRISLKVKQADELENILTKKFLRFLSMRAEAFQVLRRKPVQGYDISFLITNYHC 167
             E SINS+R+S+ VKQADE+E IL  KF+RF+ MRAE F +LRRKPV+GYDISFLITN+H 
Sbjct:    64 EGSINSVRVSIAVKQADEIEKILCHKFMRFMMMRAENFFILRRKPVEGYDISFLITNFHT 123

Query:   168 EEMQKHKLIDFIVQFMEDIDKEISELKMSVNTRGRLVATEFLK 210
             E+M KHKL+DF++ FME+IDKEISE+K+SVN R R+VA EFLK
Sbjct:   124 EQMYKHKLVDFVIHFMEEIDKEISEMKLSVNARARIVAEEFLK 166

GO:0034314 "Arp2/3 complex-mediated actin nucleation" evidence=IEA

GO:0030041 "actin filament polymerization" evidence=IEA

GO:0005885 "Arp2/3 protein complex" evidence=IEA

FB|FBgn0031781 Arpc4 "Actin-related protein 2/3 complex, subunit 4" [Drosophila melanogaster (taxid:7227)]

 Score = 573 (206.8 bits), Expect = 1.4e-55, P = 1.4e-55
 Identities = 106/168 (63%), Positives = 138/168 (82%)

Query:    45 MSNTLRLYLACIRNTLDAALCLQNFPCQEVERHNKPEVELKTSPELLLNPILICRNEAEK 104
             M+ TL+ YL  +R++L AA+CLQ+FP Q VERHNKPEVE+ +S EL+L P+++ RNE EK
Sbjct:     1 MAATLKPYLTAVRHSLTAAMCLQDFPSQVVERHNKPEVEICSSKELVLTPVVVSRNEREK 60

Query:   105 CLIETSINSLRISLKVKQADELENILTKKFLRFLSMRAEAFQVLRRKPVQGYDISFLITN 164
              LIE SINS+R+S+ VKQADE+E IL  KF RF+  RAE+F +LRRKP++GYDISFLITN
Sbjct:    61 VLIEPSINSVRVSIAVKQADEIERILCHKFTRFMMRRAESFVILRRKPIEGYDISFLITN 120

Query:   165 YHCEEMQKHKLIDFIVQFMEDIDKEISELKMSVNTRGRLVATEFLKQF 212
             +H E+M KHKL+DF++ FME+IDKEISE+K++VN R R  A EFLK+F
Sbjct:   121 FHTEQMYKHKLVDFVISFMEEIDKEISEMKLAVNARARTCAEEFLKRF 168

GO:0003779 "actin binding" evidence=ISS

GO:0005200 "structural constituent of cytoskeleton" evidence=ISS

GO:0034314 "Arp2/3 complex-mediated actin nucleation" evidence=ISS

GO:0005885 "Arp2/3 protein complex" evidence=ISS

GO:0008360 "regulation of cell shape" evidence=IMP

GO:0030866 "cortical actin cytoskeleton organization" evidence=IMP

GO:0030031 "cell projection assembly" evidence=IMP

GO:0006911 "phagocytosis, engulfment" evidence=IMP

GO:0042060 "wound healing" evidence=IMP

GO:0000902 "cell morphogenesis" evidence=IMP

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q92352	ARPC4_SCHPO	No assigned EC number	0.6071	0.7887	1.0	yes	no
P59998	ARPC4_HUMAN	No assigned EC number	0.6785	0.7887	1.0	yes	no
P59999	ARPC4_MOUSE	No assigned EC number	0.6785	0.7887	1.0	yes	no
O96625	ARPC4_DICDI	No assigned EC number	0.6666	0.7887	0.9940	yes	no
Q148J6	ARPC4_BOVIN	No assigned EC number	0.6785	0.7887	1.0	yes	no
P58798	ARPC4_CAEEL	No assigned EC number	0.6071	0.7887	0.9940	yes	no
P33204	ARPC4_YEAST	No assigned EC number	0.6176	0.7934	0.9883	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	BRADI1G01710.1	annotation not avaliable (169 aa)
		(Brachypodium distachyon)
Predicted Functional Partners:
	BRADI3G55390.1	annotation not avaliable (375 aa)				•	•	•	•		0.924
	BRADI3G09040.1	annotation not avaliable (403 aa)				•	•	•	•		0.877
	BRADI4G16300.1	annotation not avaliable (136 aa)				•	•	•	•		0.797
	BRADI1G61050.1	annotation not avaliable (252 aa)				•	•				0.708
	BRADI1G03890.3	annotation not avaliable (85 aa)				•		•	•		0.584
	BRADI1G18110.1	annotation not avaliable (310 aa)				•	•				0.560
	BRADI3G47800.1	annotation not avaliable (427 aa)					•		•		0.440

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	213
pfam05856	168	pfam05856, ARPC4, ARP2/3 complex 20 kDa subunit (A	1e-101
PTZ00278	174	PTZ00278, PTZ00278, ARP2/3 complex subunit; Provis	1e-86

>gnl|CDD|203338 pfam05856, ARPC4, ARP2/3 complex 20 kDa subunit (ARPC4)

 Score =  288 bits (740), Expect = e-101
 Identities = 116/168 (69%), Positives = 143/168 (85%)

Query: 45  MSNTLRLYLACIRNTLDAALCLQNFPCQEVERHNKPEVELKTSPELLLNPILICRNEAEK 104
           M+ TLR YL  +R TL AALCL+NFP Q VERHNKPEVE+ +S ELLLNP++I R+E E+
Sbjct: 1   MAATLRPYLDAVRRTLTAALCLRNFPSQVVERHNKPEVEVNSSKELLLNPLVISRSEKER 60

Query: 105 CLIETSINSLRISLKVKQADELENILTKKFLRFLSMRAEAFQVLRRKPVQGYDISFLITN 164
           CLIE SINS+R+S+K+KQADE+E IL +KF RFL  RA+AF +LRRKPV+GYDISFLITN
Sbjct: 61  CLIEPSINSVRVSIKIKQADEIERILARKFTRFLMQRADAFVILRRKPVEGYDISFLITN 120

Query: 165 YHCEEMQKHKLIDFIVQFMEDIDKEISELKMSVNTRGRLVATEFLKQF 212
            H E+M KHKL+DFI+ FME+IDKEISE+K+S+N+R R+VA EFLKQF
Sbjct: 121 EHTEQMGKHKLVDFIITFMEEIDKEISEMKLSLNSRARIVAEEFLKQF 168

This family consists of several eukaryotic ARP2/3 complex 20 kDa subunit (P20-ARC) proteins. The Arp2/3 protein complex has been implicated in the control of actin polymerisation in cells. The human complex consists of seven subunits which include the actin related proteins Arp2 and Arp3 it has been suggested that the complex promotes actin assembly in lamellipodia and may participate in lamellipodial protrusion. Length = 168

>gnl|CDD|240342 PTZ00278, PTZ00278, ARP2/3 complex subunit; Provisional

 Score =  253 bits (647), Expect = 1e-86
 Identities = 108/172 (62%), Positives = 132/172 (76%), Gaps = 4/172 (2%)

Query: 45  MSNTLRLYLACIRNTLDAALCLQNFPCQEVERHNKPEVEL----KTSPELLLNPILICRN 100
           M+ T + Y  CIR TL+AALCL NFP Q +ERHNKPEVEL      S EL+LNPI I R+
Sbjct: 1   MATTYQPYYDCIRKTLEAALCLGNFPSQIIERHNKPEVELNGYEGKSKELVLNPIYIVRS 60

Query: 101 EAEKCLIETSINSLRISLKVKQADELENILTKKFLRFLSMRAEAFQVLRRKPVQGYDISF 160
           E EKCLIE SINS+RIS   K++DEL+ I+ +KF+ FL+ RAE F +LRRKP+ GYDISF
Sbjct: 61  EKEKCLIEPSINSVRISFSFKKSDELDVIIARKFVSFLAQRAEQFVILRRKPIPGYDISF 120

Query: 161 LITNYHCEEMQKHKLIDFIVQFMEDIDKEISELKMSVNTRGRLVATEFLKQF 212
           LITN+H E M KHKLIDFI+ FMEDIDK+IS++K++VNTR R+ A EF K  
Sbjct: 121 LITNFHTENMFKHKLIDFIIDFMEDIDKDISDMKLNVNTRARIAAPEFFKAL 172

Length = 174

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	213
PTZ00278	174	ARP2/3 complex subunit; Provisional	100.0
PF05856	170	ARPC4: ARP2/3 complex 20 kDa subunit (ARPC4); Inte	100.0
KOG1876	168	consensus Actin-related protein Arp2/3 complex, su	100.0
PF04045	241	P34-Arc: Arp2/3 complex, 34 kD subunit p34-Arc; In	83.25

>PTZ00278 ARP2/3 complex subunit; Provisional

Probab=100.00  E-value=4.4e-100  Score=638.42  Aligned_cols=169  Identities=64%  Similarity=1.044  Sum_probs=167.9

Q ss_pred             hhhhhhhHHHHHHHHHhHhhhccCCCchhhhhcCcCcccc----cCCccccccceEEeecCCceEEEecCcceeEEEeee
Q 028136           45 MSNTLRLYLACIRNTLDAALCLQNFPCQEVERHNKPEVEL----KTSPELLLNPILICRNEAEKCLIETSINSLRISLKV  120 (213)
Q Consensus        45 Ma~tl~pYl~~VR~TL~aALCL~nF~Sq~VErhNkPEVE~----~~s~elLl~Pl~IsRne~EkcLIE~SINSvRVSi~i  120 (213)
                      ||+|+||||+|||+||+|||||+|||||+||||||||||+    ++|+|||++|++|+|||+|+||||||||||||||||
T Consensus         1 Ms~~l~pYl~aVr~tL~aAlcL~nF~Sq~vErhnkPEVE~~~~~~ts~elLl~pl~I~Rne~E~clIE~SiNSvRiSi~i   80 (174)
T PTZ00278          1 MATTYQPYYDCIRKTLEAALCLGNFPSQIIERHNKPEVELNGYEGKSKELVLNPIYIVRSEKEKCLIEPSINSVRISFSF   80 (174)
T ss_pred             CCcccchHHHHHHHHHHHHHHHhcCchHHHhccCCCcEEecCCCCCCHHHhcCcEEEEEcCCceEEEEcccceEEEEEEe
Confidence            8999999999999999999999999999999999999999    999999999999999999999999999999999999


Q ss_pred             eccchHHHHHHHHHHHHHhccccceeeeeeCCCCccceeEeeehhHHHHhhhhhHHHHHHHHHHHHHHHHhhcchhcchh
Q 028136          121 KQADELENILTKKFLRFLSMRAEAFQVLRRKPVQGYDISFLITNYHCEEMQKHKLIDFIVQFMEDIDKEISELKMSVNTR  200 (213)
Q Consensus       121 kqaDeiE~iL~~kf~rFl~~RAe~F~ILRRKPv~GYDISFLITn~H~E~m~K~kLidFIi~FmeeiDkeIsemKL~lnaR  200 (213)
                      ||+||||+||+|||++|||||||+|+|||||||+||||||||||+|+|+|+|||||||||+||||||||||||||++|+|
T Consensus        81 kqaDeie~iL~~kf~~Fl~~RAe~F~ILRrkPv~GYDISFLItn~H~e~m~k~kLidFIi~FmeeiDkeIsemKL~~NaR  160 (174)
T PTZ00278         81 KKSDELDVIIARKFVSFLAQRAEQFVILRRKPIPGYDISFLITNFHTENMFKHKLIDFIIDFMEDIDKDISDMKLNVNTR  160 (174)
T ss_pred             hhhChHHHHHHHHHHHHHHhhhhceeEEeecCcCCCChhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhHHHHHHHhhhC
Q 028136          201 GRLVATEFLKQFV  213 (213)
Q Consensus       201 aR~~A~~fl~~f~  213 (213)
                      ||+||++||++|+
T Consensus       161 aR~~A~~fl~~f~  173 (174)
T PTZ00278        161 ARIAAPEFFKALA  173 (174)
T ss_pred             HHHHHHHHHHHhc
Confidence            9999999999985

>PF05856 ARPC4: ARP2/3 complex 20 kDa subunit (ARPC4); InterPro: IPR008384 This family consists of several eukaryotic ARP2/3 complex 20 kDa subunit (P20-ARC) proteins

Probab=100.00  E-value=5.5e-100  Score=636.50  Aligned_cols=168  Identities=72%  Similarity=1.109  Sum_probs=139.7

Q ss_pred             hhhhhhhHHHHHHHHHhHhhhccCCCchhhhhcCcCccccc--CCccccccceEEeecCCceEEEecCcceeEEEeeeec
Q 028136           45 MSNTLRLYLACIRNTLDAALCLQNFPCQEVERHNKPEVELK--TSPELLLNPILICRNEAEKCLIETSINSLRISLKVKQ  122 (213)
Q Consensus        45 Ma~tl~pYl~~VR~TL~aALCL~nF~Sq~VErhNkPEVE~~--~s~elLl~Pl~IsRne~EkcLIE~SINSvRVSi~ikq  122 (213)
                      ||+||+|||+|||+||+|||||+|||||+||||||||||++  +|||+||||++|+||++|+||||||||||||||+|||
T Consensus         1 Ms~tl~pYl~~Vr~tL~aalcL~nf~sq~vErhnkPEVE~~~~~s~elll~pl~I~Rne~E~clIE~SiNSvRvSi~ikq   80 (170)
T PF05856_consen    1 MSATLRPYLDAVRRTLTAALCLQNFPSQVVERHNKPEVEVQGPSSKELLLNPLVISRNEKEKCLIEPSINSVRVSIKIKQ   80 (170)
T ss_dssp             --TSHHHHHHHHHHHHHHHT-------SSSTT----HHHH-----CCCB---EEEESSSS-EEEEEEBSSEEEEEEE---
T ss_pred             CCcchhhHHHHHHHHHHHHHHHhhCchhhhhhcCCCceeecCCCCHHHhcCceeeccCCCceEEEEcccceEEEEEEecc
Confidence            89999999999999999999999999999999999999999  9999999999999999999999999999999999999


Q ss_pred             cchHHHHHHHHHHHHHhccccceeeeeeCCCCccceeEeeehhHHHHhhhhhHHHHHHHHHHHHHHHHhhcchhcchhhh
Q 028136          123 ADELENILTKKFLRFLSMRAEAFQVLRRKPVQGYDISFLITNYHCEEMQKHKLIDFIVQFMEDIDKEISELKMSVNTRGR  202 (213)
Q Consensus       123 aDeiE~iL~~kf~rFl~~RAe~F~ILRRKPv~GYDISFLITn~H~E~m~K~kLidFIi~FmeeiDkeIsemKL~lnaRaR  202 (213)
                      +||||+||||||++|||||||+|+|||||||+||||||||||+|+|+|+|||||||||+||||||||||||||++|+|||
T Consensus        81 ~Deie~iL~~kf~rFl~~RAe~F~ILRRkPv~GYDISFLIt~~h~e~m~k~kLidFIi~FmeeiDkeIs~mKl~~naRaR  160 (170)
T PF05856_consen   81 ADEIERILCHKFTRFLMQRAENFFILRRKPVEGYDISFLITNFHTEQMGKHKLIDFIITFMEEIDKEISEMKLSLNARAR  160 (170)
T ss_dssp             -SCHHHHHHHHHHHHHHHCTTTSTTB-SS--TTSSEEEEEECCHHHHSTHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHH
T ss_pred             cChHHHHHHHHHHHHHHhhhhhheeeeecCcCCCceeeeeechhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHhhh
Q 028136          203 LVATEFLKQF  212 (213)
Q Consensus       203 ~~A~~fl~~f  212 (213)
                      ++|++||++|
T Consensus       161 ~~A~~fl~~f  170 (170)
T PF05856_consen  161 IVAEEFLKQF  170 (170)
T ss_dssp             HHHHHHHCC-
T ss_pred             HHHHHHHhcC
Confidence            9999999987

The Arp2/3 protein complex has been implicated in the control of actin polymerisation in cells. The human complex consists of seven subunits which include the actin related proteins Arp2 and Arp3 it has been suggested that the complex promotes actin assembly in lamellipodia and may participate in lamellipodial protrusion [].; GO: 0030041 actin filament polymerization, 0005856 cytoskeleton; PDB: 3DWL_K 1K8K_F 1U2V_F 2P9S_F 2P9U_F 2P9N_F 3DXK_F 1TYQ_F 3RSE_F 2P9I_F ....

>KOG1876 consensus Actin-related protein Arp2/3 complex, subunit ARPC4 [Cytoskeleton]

Probab=100.00  E-value=3.5e-93  Score=589.79  Aligned_cols=168  Identities=71%  Similarity=1.075  Sum_probs=166.8

Q ss_pred             hhhhhhhHHHHHHHHHhHhhhccCCCchhhhhcCcCcccccCCccccccceEEeecCCceEEEecCcceeEEEeeeeccc
Q 028136           45 MSNTLRLYLACIRNTLDAALCLQNFPCQEVERHNKPEVELKTSPELLLNPILICRNEAEKCLIETSINSLRISLKVKQAD  124 (213)
Q Consensus        45 Ma~tl~pYl~~VR~TL~aALCL~nF~Sq~VErhNkPEVE~~~s~elLl~Pl~IsRne~EkcLIE~SINSvRVSi~ikqaD  124 (213)
                      |++||+|||.+||.||+|||||+|||||+||||||||||+++|+|+|++|++|||||+|+||||+|||||||||++||+|
T Consensus         1 ms~tl~pyl~avr~tl~aal~L~nFssq~VERhnkPEVEv~ss~elll~pv~isRNe~Ek~LIE~SiNSvRiSi~vKQaD   80 (168)
T KOG1876|consen    1 MSATLRPYLTAVRHTLTAALCLENFSSQEVERHNKPEVEVKSSKELLLTPVVISRNEQEKVLIEPSINSVRISIAVKQAD   80 (168)
T ss_pred             CCchhHhHHHHHHHHHHHHHHHHhCCHHHHHhcCCCcceecCcHHHhhCceEeecccccceeEecccceEEEEEeecchH
Confidence            79999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hHHHHHHHHHHHHHhccccceeeeeeCCCCccceeEeeehhHHHHhhhhhHHHHHHHHHHHHHHHHhhcchhcchhhhHH
Q 028136          125 ELENILTKKFLRFLSMRAEAFQVLRRKPVQGYDISFLITNYHCEEMQKHKLIDFIVQFMEDIDKEISELKMSVNTRGRLV  204 (213)
Q Consensus       125 eiE~iL~~kf~rFl~~RAe~F~ILRRKPv~GYDISFLITn~H~E~m~K~kLidFIi~FmeeiDkeIsemKL~lnaRaR~~  204 (213)
                      |||+||||||+||||||||+|+|||||||+||||||||||+|+|+|+||||+||+|+||||+|||||+|||++|+|+|.+
T Consensus        81 EiE~IL~~KF~rFl~~RAe~F~iLRRkPv~gy~IsfLItn~hte~m~k~Klvdf~iefmeeidkeiSemkl~~n~rar~~  160 (168)
T KOG1876|consen   81 EIERILCHKFTRFLMMRAEAFFILRRKPVQGYDISFLITNFHTEQMYKHKLVDFIIEFMEEIDKEISEMKLFLNARARQV  160 (168)
T ss_pred             HHHHHHHHHHHHHHHHhhhhheeeeeCCcCccchhhhhhccchHHHHhchhHHHHHHHHHHHhhhhhhhccccchhhHHh
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHhhh
Q 028136          205 ATEFLKQF  212 (213)
Q Consensus       205 A~~fl~~f  212 (213)
                      |++|++.|
T Consensus       161 ae~fl~~F  168 (168)
T KOG1876|consen  161 AEEFLKRF  168 (168)
T ss_pred             HHHHHhcC
Confidence            99999976

>PF04045 P34-Arc: Arp2/3 complex, 34 kD subunit p34-Arc; InterPro: IPR007188 Arp2/3 protein complex has been implicated in the control of actin polymerisation in cells

Probab=83.25  E-value=30  Score=31.17  Aligned_cols=121  Identities=22%  Similarity=0.278  Sum_probs=94.9

Q ss_pred             ccceEEeecCCceEEEecCcceeEEEeeeeccchHHHHHHHHHHHHHhc-cc----cceeeeeeC---CCC---------
Q 028136           92 LNPILICRNEAEKCLIETSINSLRISLKVKQADELENILTKKFLRFLSM-RA----EAFQVLRRK---PVQ---------  154 (213)
Q Consensus        92 l~Pl~IsRne~EkcLIE~SINSvRVSi~ikqaDeiE~iL~~kf~rFl~~-RA----e~F~ILRRK---Pv~---------  154 (213)
                      -.|+.|-..++|-++|.++=+.|=|-|.+.-.|+-++++.+-|+.=+.. |-    .+=++|...   |.+         
T Consensus        91 ~~~~~i~YR~~E~iyi~~~~DrVTVIFst~F~D~~D~vigkvFLQEFvdaRr~~~~~APqvlfS~~~PPlEl~~~~~~~~  170 (241)
T PF04045_consen   91 EKPAVIHYRDDETIYIKPSKDRVTVIFSTRFKDEDDRVIGKVFLQEFVDARRRSRQTAPQVLFSHREPPLELRGVPGARN  170 (241)
T ss_dssp             TT-EEEEECTTEEEEEEEESSEEEEEEEEE-SSCCHHHHHHHHHHHHHTGGGT--TTS-EEEEECSS--CGGTT-TT---
T ss_pred             CceEEEEeCCCceEEEEeCCCEEEEEEEEEEcCCCCeEeeHHHHHHHHHhccccCCCCCceeccCCCCChhHcCCCCccc
Confidence            5678887888999999999999999999999999999999999976631 11    233455543   322         


Q ss_pred             ----ccceeEeeehhH-HHHhhhhhHHHHHHHHHHHHHHHHhhcchhcchhhhHHHHHHHhhh
Q 028136          155 ----GYDISFLITNYH-CEEMQKHKLIDFIVQFMEDIDKEISELKMSVNTRGRLVATEFLKQF  212 (213)
Q Consensus       155 ----GYDISFLITn~H-~E~m~K~kLidFIi~FmeeiDkeIsemKL~lnaRaR~~A~~fl~~f  212 (213)
                          +.-|||.+.-.| ++.=...+-|+.|..|=.-+-=-|.--|--+-+|=|.=.++|++-+
T Consensus       171 ~~~n~gyvTFvLfprH~~~~~~~~~ti~~l~~FR~YlhYHIKcsKaymHsRMR~Rv~~~lkvL  233 (241)
T PF04045_consen  171 LGDNVGYVTFVLFPRHFVTPERRDNTIWHLQTFRNYLHYHIKCSKAYMHSRMRKRVESFLKVL  233 (241)
T ss_dssp             -STTEEEEEEEEEHHHGHSTTTHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             cCCCeEEEEEEEeccccCcchhHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHH
Confidence                234999999999 6666778899999999998888888888888899888888888754

The human complex consists of seven subunits, which include the actin related Arp2 and Arp3, and five others referred to as p41-Arc, p34-Arc, p21-Arc, p20-Arc, and p16-Arc []. This family represents the p34-Arc subunit.; GO: 0030833 regulation of actin filament polymerization, 0005856 cytoskeleton; PDB: 2P9L_D 2P9I_D 2P9U_D 3DXM_D 2P9N_D 1TYQ_D 3DXK_D 1K8K_D 2P9S_D 1U2V_D ....

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	213
1k8k_F	168	Crystal Structure Of Arp23 COMPLEX Length = 168		1e-65
3dwl_F	168	Crystal Structure Of Fission Yeast Arp2/3 Complex L		7e-59

>pdb|1K8K|F Chain F, Crystal Structure Of Arp23 COMPLEX Length = 168

Iteration: 1
 Score =  245 bits (625), Expect = 1e-65,   Method: Compositional matrix adjust.
 Identities = 114/168 (67%), Positives = 139/168 (82%)
Query: 45  MSNTLRLYLACIRNTLDAALCLQNFPCQEVERHNKPEVELKTSPELLLNPILICRNEAEK 104
           M+ TLR YL+ +R TL AALCL+NF  Q VERHNKPEVE+++S ELLL P+ I RNE EK
Sbjct: 1   MTATLRPYLSAVRATLQAALCLENFSSQVVERHNKPEVEVRSSKELLLQPVTISRNEKEK 60
Query: 105 CLIETSINSLRISLKVKQADELENILTKKFLRFLSMRAEAFQVLRRKPVQGYDISFLITN 164
            LIE SINS+R+S+ VKQADE+E IL  KF+RF+ MRAE F +LRRKPV+GYDISFLITN
Sbjct: 61  VLIEGSINSVRVSIAVKQADEIEKILCHKFMRFMMMRAENFFILRRKPVEGYDISFLITN 120
Query: 165 YHCEEMQKHKLIDFIVQFMEDIDKEISELKMSVNTRGRLVATEFLKQF 212
           +H E+M KHKL+DF++ FME+IDKEISE+K+SVN R R+VA EFLK F
Sbjct: 121 FHTEQMYKHKLVDFVIHFMEEIDKEISEMKLSVNARARIVAEEFLKNF 168

>pdb|3DWL|F Chain F, Crystal Structure Of Fission Yeast Arp2/3 Complex Lacking The Arp2 Subunit Length = 168

Iteration: 1
 Score =  223 bits (567), Expect = 7e-59,   Method: Compositional matrix adjust.
 Identities = 102/168 (60%), Positives = 136/168 (80%)
Query: 45  MSNTLRLYLACIRNTLDAALCLQNFPCQEVERHNKPEVELKTSPELLLNPILICRNEAEK 104
           MSNTLR YL  +R+TL A+L L+ F  + VER ++PEVE+  SPE+LL P+++ RNE E+
Sbjct: 1   MSNTLRPYLNAVRSTLTASLALEEFSSEIVERQSQPEVEVGRSPEILLKPLVVSRNEQEQ 60
Query: 105 CLIETSINSLRISLKVKQADELENILTKKFLRFLSMRAEAFQVLRRKPVQGYDISFLITN 164
           CLIE+S+NS+R S+++KQ DE+E IL +KF++FL  RAE+F +LRRKPVQGYDISFLITN
Sbjct: 61  CLIESSVNSVRFSIRIKQVDEIERILVRKFMQFLMGRAESFFILRRKPVQGYDISFLITN 120
Query: 165 YHCEEMQKHKLIDFIVQFMEDIDKEISELKMSVNTRGRLVATEFLKQF 212
           YH EEM KHKL+DFI++FME++D EISE+K+ +N R RLVA  +L  F
Sbjct: 121 YHTEEMLKHKLVDFIIEFMEEVDAEISEMKLFLNGRARLVAETYLSCF 168

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	213
3dwl_F	168	Actin-related protein 2/3 complex subunit 4; prope	1e-91
1k8k_F	168	P20, ARP2/3 complex 20 kDa subunit, P20-ARC; beta-	2e-90

>3dwl_F Actin-related protein 2/3 complex subunit 4; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe} Length = 168

 Score =  264 bits (677), Expect = 1e-91
 Identities = 102/168 (60%), Positives = 136/168 (80%)

Query: 45  MSNTLRLYLACIRNTLDAALCLQNFPCQEVERHNKPEVELKTSPELLLNPILICRNEAEK 104
           MSNTLR YL  +R+TL A+L L+ F  + VER ++PEVE+  SPE+LL P+++ RNE E+
Sbjct: 1   MSNTLRPYLNAVRSTLTASLALEEFSSEIVERQSQPEVEVGRSPEILLKPLVVSRNEQEQ 60

Query: 105 CLIETSINSLRISLKVKQADELENILTKKFLRFLSMRAEAFQVLRRKPVQGYDISFLITN 164
           CLIE+S+NS+R S+++KQ DE+E IL +KF++FL  RAE+F +LRRKPVQGYDISFLITN
Sbjct: 61  CLIESSVNSVRFSIRIKQVDEIERILVRKFMQFLMGRAESFFILRRKPVQGYDISFLITN 120

Query: 165 YHCEEMQKHKLIDFIVQFMEDIDKEISELKMSVNTRGRLVATEFLKQF 212
           YH EEM KHKL+DFI++FME++D EISE+K+ +N R RLVA  +L  F
Sbjct: 121 YHTEEMLKHKLVDFIIEFMEEVDAEISEMKLFLNGRARLVAETYLSCF 168

>1k8k_F P20, ARP2/3 complex 20 kDa subunit, P20-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: d.198.2.1 PDB: 1tyq_F* 1u2v_F* 2p9i_F* 2p9k_F* 2p9l_F 2p9n_F* 2p9p_F* 2p9s_F* 2p9u_F* 3dxk_F* 3dxm_F* 3rse_F Length = 168

 Score =  261 bits (669), Expect = 2e-90
 Identities = 114/168 (67%), Positives = 139/168 (82%)

Query: 45  MSNTLRLYLACIRNTLDAALCLQNFPCQEVERHNKPEVELKTSPELLLNPILICRNEAEK 104
           M+ TLR YL+ +R TL AALCL+NF  Q VERHNKPEVE+++S ELLL P+ I RNE EK
Sbjct: 1   MTATLRPYLSAVRATLQAALCLENFSSQVVERHNKPEVEVRSSKELLLQPVTISRNEKEK 60

Query: 105 CLIETSINSLRISLKVKQADELENILTKKFLRFLSMRAEAFQVLRRKPVQGYDISFLITN 164
            LIE SINS+R+S+ VKQADE+E IL  KF+RF+ MRAE F +LRRKPV+GYDISFLITN
Sbjct: 61  VLIEGSINSVRVSIAVKQADEIEKILCHKFMRFMMMRAENFFILRRKPVEGYDISFLITN 120

Query: 165 YHCEEMQKHKLIDFIVQFMEDIDKEISELKMSVNTRGRLVATEFLKQF 212
           +H E+M KHKL+DF++ FME+IDKEISE+K+SVN R R+VA EFLK F
Sbjct: 121 FHTEQMYKHKLVDFVIHFMEEIDKEISEMKLSVNARARIVAEEFLKNF 168

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	213
3dwl_F	168	Actin-related protein 2/3 complex subunit 4; prope	100.0
1k8k_F	168	P20, ARP2/3 complex 20 kDa subunit, P20-ARC; beta-	100.0
3dwl_D	317	Actin-related protein 2/3 complex subunit 2; prope	83.57

>3dwl_F Actin-related protein 2/3 complex subunit 4; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}

Probab=100.00  E-value=4.5e-102  Score=646.25  Aligned_cols=168  Identities=61%  Similarity=1.005  Sum_probs=165.4

Q ss_pred             hhhhhhhHHHHHHHHHhHhhhccCCCchhhhhcCcCcccccCCccccccceEEeecCCceEEEecCcceeEEEeeeeccc
Q 028136           45 MSNTLRLYLACIRNTLDAALCLQNFPCQEVERHNKPEVELKTSPELLLNPILICRNEAEKCLIETSINSLRISLKVKQAD  124 (213)
Q Consensus        45 Ma~tl~pYl~~VR~TL~aALCL~nF~Sq~VErhNkPEVE~~~s~elLl~Pl~IsRne~EkcLIE~SINSvRVSi~ikqaD  124 (213)
                      ||+||||||+|||+||+|||||+|||||+||||||||||+++|||+|+||++|+||++|+||||||||||||||+|||+|
T Consensus         1 Ma~tl~pYl~~Vr~tL~aAlcl~nF~Sq~vErhnkPEVE~~~s~elll~p~~I~Rne~E~clIE~SiNSvRvSi~ikqaD   80 (168)
T 3dwl_F            1 MSNTLRPYLNAVRSTLTASLALEEFSSEIVERQSQPEVEVGRSPEILLKPLVVSRNEQEQCLIESSVNSVRFSIRIKQVD   80 (168)
T ss_dssp             --CCHHHHHHHHHHHHHHHTCCCCCCCSSSTTCCCCHHHHCCCTTTBCCCEEEESSSSCEEEEEEBSSEEEEEEECCCCS
T ss_pred             CCcchhhHHHHHHHHHHHHHHHhcCchHHHhhcCCCceeccCCHhHhcCceEEeecCCceEEEEcccceEEEEEEehhhc
Confidence            89999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hHHHHHHHHHHHHHhccccceeeeeeCCCCccceeEeeehhHHHHhhhhhHHHHHHHHHHHHHHHHhhcchhcchhhhHH
Q 028136          125 ELENILTKKFLRFLSMRAEAFQVLRRKPVQGYDISFLITNYHCEEMQKHKLIDFIVQFMEDIDKEISELKMSVNTRGRLV  204 (213)
Q Consensus       125 eiE~iL~~kf~rFl~~RAe~F~ILRRKPv~GYDISFLITn~H~E~m~K~kLidFIi~FmeeiDkeIsemKL~lnaRaR~~  204 (213)
                      |||+||||||++|||||||+|+|||||||+||||||||||+|+|+|+|||||||||+||||||||||||||++|+|||+|
T Consensus        81 eie~iL~~kf~rFl~~RAe~f~ILRrkPv~GYDISFLItn~H~e~m~k~kLvdFIi~FmeevdkeIsemKl~lnaRaR~~  160 (168)
T 3dwl_F           81 EIERILVRKFMQFLMGRAESFFILRRKPVQGYDISFLITNYHTEEMLKHKLVDFIIEFMEEVDAEISEMKLFLNGRARLV  160 (168)
T ss_dssp             SHHHHHHHHHHHHHGGGTTTSTTBCSSCCTTCSEEEEEETTHHHHSCHHHHHHHHHHHHHHHHHHHHHHHTTTHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHhcccceEEeeeCCcCCcceeeeehHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHhhh
Q 028136          205 ATEFLKQF  212 (213)
Q Consensus       205 A~~fl~~f  212 (213)
                      |++||++|
T Consensus       161 A~~fl~~f  168 (168)
T 3dwl_F          161 AETYLSCF  168 (168)
T ss_dssp             HHHHHHHC
T ss_pred             HHHHHhcC
Confidence            99999987

>1k8k_F P20, ARP2/3 complex 20 kDa subunit, P20-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: d.198.2.1 PDB: 1tyq_F* 1u2v_F* 2p9i_F* 2p9k_F* 2p9l_F 2p9n_F* 2p9p_F* 2p9s_F* 2p9u_F* 3dxk_F* 3dxm_F* 3rse_F

Probab=100.00  E-value=1.1e-101  Score=644.40  Aligned_cols=168  Identities=68%  Similarity=1.068  Sum_probs=165.6

Q ss_pred             hhhhhhhHHHHHHHHHhHhhhccCCCchhhhhcCcCcccccCCccccccceEEeecCCceEEEecCcceeEEEeeeeccc
Q 028136           45 MSNTLRLYLACIRNTLDAALCLQNFPCQEVERHNKPEVELKTSPELLLNPILICRNEAEKCLIETSINSLRISLKVKQAD  124 (213)
Q Consensus        45 Ma~tl~pYl~~VR~TL~aALCL~nF~Sq~VErhNkPEVE~~~s~elLl~Pl~IsRne~EkcLIE~SINSvRVSi~ikqaD  124 (213)
                      ||+||+|||+|||+||+|||||+|||||+||||||||||+++|||+|+||++|+||++|+||||||||||||||||||+|
T Consensus         1 Ma~tl~pYl~~vr~tL~aAlCL~nF~Sq~vErhnkPEVE~~~s~elLl~pl~i~Rne~E~clIE~SiNSvRvSi~ikq~D   80 (168)
T 1k8k_F            1 MTATLRPYLSAVRATLQAALCLENFSSQVVERHNKPEVEVRSSKELLLQPVTISRNEKEKVLIEGSINSVRVSIAVKQAD   80 (168)
T ss_dssp             -CCSHHHHHHHHHHHHHHHCCCCCCCCSSSTTCCCCHHHHCCCGGGBCCCEEEESSSSCEEEEEEBSSEEEEEEECCCCS
T ss_pred             CCcccchHHHHHHHHHHHHHHHhcCcHHHHhhcCCCceeecCCHHHhccceEEEecCCceEEEEcccceEEEEEEEcccC
Confidence            89999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hHHHHHHHHHHHHHhccccceeeeeeCCCCccceeEeeehhHHHHhhhhhHHHHHHHHHHHHHHHHhhcchhcchhhhHH
Q 028136          125 ELENILTKKFLRFLSMRAEAFQVLRRKPVQGYDISFLITNYHCEEMQKHKLIDFIVQFMEDIDKEISELKMSVNTRGRLV  204 (213)
Q Consensus       125 eiE~iL~~kf~rFl~~RAe~F~ILRRKPv~GYDISFLITn~H~E~m~K~kLidFIi~FmeeiDkeIsemKL~lnaRaR~~  204 (213)
                      |||+||||||++|||||||+|+|||||||+||||||||||+|+|+|+|||||||||+||||||||||||||++|+|||+|
T Consensus        81 eiE~iL~~kf~rFl~~RAe~f~ILRrkPv~GYDISFLItn~h~e~m~k~kLidFIi~FmeeiDkeIsemKl~~NaRaR~~  160 (168)
T 1k8k_F           81 EIEKILCHKFMRFMMMRAENFFILRRKPVEGYDISFLITNFHTEQMYKHKLVDFVIHFMEEIDKEISEMKLSVNARARIV  160 (168)
T ss_dssp             HHHHHHHHHHHHHHHHTTTTSTTBCSSCCTTCSEEEEEEHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHhcccceEEeeeCCcCCccchhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHhhh
Q 028136          205 ATEFLKQF  212 (213)
Q Consensus       205 A~~fl~~f  212 (213)
                      |++||++|
T Consensus       161 A~~fl~~f  168 (168)
T 1k8k_F          161 AEEFLKNF  168 (168)
T ss_dssp             HHHHHTC-
T ss_pred             HHHHhhcC
Confidence            99999987

>3dwl_D Actin-related protein 2/3 complex subunit 2; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}

Probab=83.57  E-value=12  Score=33.82  Aligned_cols=121  Identities=21%  Similarity=0.254  Sum_probs=97.6

Q ss_pred             ccceEEeecCCceEEEecCcceeEEEeeeeccchHHHHHHHHHHHHHh-cc-c----cceeeeee---CCCC--------
Q 028136           92 LNPILICRNEAEKCLIETSINSLRISLKVKQADELENILTKKFLRFLS-MR-A----EAFQVLRR---KPVQ--------  154 (213)
Q Consensus        92 l~Pl~IsRne~EkcLIE~SINSvRVSi~ikqaDeiE~iL~~kf~rFl~-~R-A----e~F~ILRR---KPv~--------  154 (213)
                      -.++.|...+.|-++|+++=+.|=|-+.....|+-++++.+-|+.=+. -| +    -+=+||..   -|.+        
T Consensus       154 ~~~~~I~YR~~E~iyI~p~~DrVTVIFst~FkDe~D~v~gkvFLQEFvdaRr~~~~~~APqvlfs~~ePPlEL~~~~~~~  233 (317)
T 3dwl_D          154 QELMAIHYRDEETIVLWPEHDRVTVVFSTKFREETDRIFGKVFLQEFVDARRRPAIQTAPQVLFSYRDPPLEIRDIQGIQ  233 (317)
T ss_dssp             TTCEEECCSSSCCEEEEECSSEEEEEEEECCSSSSHHHHHHHHHHHHHCCCC-----CCCEEEECSSSCCSCCCSCC---
T ss_pred             CCeeEEecCCCceEEEEecCCeEEEEEEEEecCCCceeehHHHHHHHHHHhhccccCCCCcccccCCCCChHHhCCCccc
Confidence            368889999999999999999999999999999999999999987543 22 1    22345555   3333        


Q ss_pred             ----ccceeEeeehhHHHHhhhhhHHHHHHHHHHHHHHHHhhcchhcchhhhHHHHHHHhhh
Q 028136          155 ----GYDISFLITNYHCEEMQKHKLIDFIVQFMEDIDKEISELKMSVNTRGRLVATEFLKQF  212 (213)
Q Consensus       155 ----GYDISFLITn~H~E~m~K~kLidFIi~FmeeiDkeIsemKL~lnaRaR~~A~~fl~~f  212 (213)
                          +-=|||.+.-.|++.=-+.+-|+.|..|=.-+-=-|.--|--+-+|=|.=-++|++-+
T Consensus       234 ~~~n~gyVTFvLFpRH~~~~~~~~ti~~i~~FR~YlhYHIKcSKaymHsRMR~rv~~~l~vL  295 (317)
T 3dwl_D          234 KGDDFGFVTFVLFERHFTPQNREDCISHIQVFRNTLHFHIKASKAYMHQRMRKRVADFQKVL  295 (317)
T ss_dssp             ----CEEEEEEEEGGGGCTTTHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             cCCCeeEEEEEechHhcCChhHHHHHHHHHHHHHHhhhhheecHHHHHHHHHHHHHHHHHHH
Confidence                2338999999999887788999999999999988888888888888887777887643

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	213
d1k8kf_	167	d.198.2.1 (F:) ARPC4 (20 kDa subunit) {Cow (Bos ta	1e-100

>d1k8kf_ d.198.2.1 (F:) ARPC4 (20 kDa subunit) {Cow (Bos taurus) [TaxId: 9913]} Length = 167

class: Alpha and beta proteins (a+b)
fold: Secretion chaperone-like
superfamily: Arp2/3 complex subunits
family: Arp2/3 complex subunits
domain: ARPC4 (20 kDa subunit)
species: Cow (Bos taurus) [TaxId: 9913]

 Score =  284 bits (729), Expect = e-100
 Identities = 113/167 (67%), Positives = 138/167 (82%)

Query: 46  SNTLRLYLACIRNTLDAALCLQNFPCQEVERHNKPEVELKTSPELLLNPILICRNEAEKC 105
           + TLR YL+ +R TL AALCL+NF  Q VERHNKPEVE+++S ELLL P+ I RNE EK 
Sbjct: 1   TATLRPYLSAVRATLQAALCLENFSSQVVERHNKPEVEVRSSKELLLQPVTISRNEKEKV 60

Query: 106 LIETSINSLRISLKVKQADELENILTKKFLRFLSMRAEAFQVLRRKPVQGYDISFLITNY 165
           LIE SINS+R+S+ VKQADE+E IL  KF+RF+ MRAE F +LRRKPV+GYDISFLITN+
Sbjct: 61  LIEGSINSVRVSIAVKQADEIEKILCHKFMRFMMMRAENFFILRRKPVEGYDISFLITNF 120

Query: 166 HCEEMQKHKLIDFIVQFMEDIDKEISELKMSVNTRGRLVATEFLKQF 212
           H E+M KHKL+DF++ FME+IDKEISE+K+SVN R R+VA EFLK F
Sbjct: 121 HTEQMYKHKLVDFVIHFMEEIDKEISEMKLSVNARARIVAEEFLKNF 167

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	213
d1k8kf_	167	ARPC4 (20 kDa subunit) {Cow (Bos taurus) [TaxId: 9	100.0
d1k8kd2	164	ARPC2 (34 kDa subunit) {Cow (Bos taurus) [TaxId: 9	82.88

>d1k8kf_ d.198.2.1 (F:) ARPC4 (20 kDa subunit) {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a+b)
fold: Secretion chaperone-like
superfamily: Arp2/3 complex subunits
family: Arp2/3 complex subunits
domain: ARPC4 (20 kDa subunit)
species: Cow (Bos taurus) [TaxId: 9913]

Probab=100.00  E-value=4.6e-99  Score=626.09  Aligned_cols=167  Identities=68%  Similarity=1.066  Sum_probs=164.9

Q ss_pred             hhhhhhHHHHHHHHHhHhhhccCCCchhhhhcCcCcccccCCccccccceEEeecCCceEEEecCcceeEEEeeeeccch
Q 028136           46 SNTLRLYLACIRNTLDAALCLQNFPCQEVERHNKPEVELKTSPELLLNPILICRNEAEKCLIETSINSLRISLKVKQADE  125 (213)
Q Consensus        46 a~tl~pYl~~VR~TL~aALCL~nF~Sq~VErhNkPEVE~~~s~elLl~Pl~IsRne~EkcLIE~SINSvRVSi~ikqaDe  125 (213)
                      ++||+|||+|||+||+|||||+|||||+||||||||||+++|+|+|++|++|+||++|+||||||||||||||+|||+||
T Consensus         1 s~~L~PYl~aVr~tL~aalcL~nf~Sq~vErhnkPEVE~~~s~elll~pl~i~R~e~E~clIE~SiNSvRiSi~ikq~De   80 (167)
T d1k8kf_           1 TATLRPYLSAVRATLQAALCLENFSSQVVERHNKPEVEVRSSKELLLQPVTISRNEKEKVLIEGSINSVRVSIAVKQADE   80 (167)
T ss_dssp             CCSHHHHHHHHHHHHHHHCCCCCCCCSSSTTCCCCHHHHCCCGGGBCCCEEEESSSSCEEEEEEBSSEEEEEEECCCCSH
T ss_pred             CcchhHHHHHHHHHHHHHHHHhhCchhhHhhcCCCceeecCChhhhcccEEEEEcCCceEEEEcccceEEEEEEecccch
Confidence            57999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHhccccceeeeeeCCCCccceeEeeehhHHHHhhhhhHHHHHHHHHHHHHHHHhhcchhcchhhhHHH
Q 028136          126 LENILTKKFLRFLSMRAEAFQVLRRKPVQGYDISFLITNYHCEEMQKHKLIDFIVQFMEDIDKEISELKMSVNTRGRLVA  205 (213)
Q Consensus       126 iE~iL~~kf~rFl~~RAe~F~ILRRKPv~GYDISFLITn~H~E~m~K~kLidFIi~FmeeiDkeIsemKL~lnaRaR~~A  205 (213)
                      ||+||||||++|||||||+|+|||||||+||||||||||+|+|+|+|||||||||+||||||||||||||++|+|||++|
T Consensus        81 ie~iL~~kf~~Fl~~rae~F~ILRrkPi~GYDISFLItn~h~e~m~k~klvdFIi~FmeeiDkeIsemKL~~n~raR~~A  160 (167)
T d1k8kf_          81 IEKILCHKFMRFMMMRAENFFILRRKPVEGYDISFLITNFHTEQMYKHKLVDFVIHFMEEIDKEISEMKLSVNARARIVA  160 (167)
T ss_dssp             HHHHHHHHHHHHHHHTTTTSTTBCSSCCTTCSEEEEEEHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHhhhhceeeeecCcCCCceeeeehhHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHhhh
Q 028136          206 TEFLKQF  212 (213)
Q Consensus       206 ~~fl~~f  212 (213)
                      ++||++|
T Consensus       161 e~fl~~f  167 (167)
T d1k8kf_         161 EEFLKNF  167 (167)
T ss_dssp             HHHHTC-
T ss_pred             HHHhhcC
Confidence            9999987

>d1k8kd2 d.198.2.1 (D:121-284) ARPC2 (34 kDa subunit) {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a+b)
fold: Secretion chaperone-like
superfamily: Arp2/3 complex subunits
family: Arp2/3 complex subunits
domain: ARPC2 (34 kDa subunit)
species: Cow (Bos taurus) [TaxId: 9913]

Probab=82.88  E-value=9.1  Score=29.90  Aligned_cols=120  Identities=23%  Similarity=0.319  Sum_probs=93.5

Q ss_pred             cceEEeecCCceEEEecCcceeEEEeeeeccchHHHHHHHHHHHHHhc--cc--cceeeeee---CCCC-----------
Q 028136           93 NPILICRNEAEKCLIETSINSLRISLKVKQADELENILTKKFLRFLSM--RA--EAFQVLRR---KPVQ-----------  154 (213)
Q Consensus        93 ~Pl~IsRne~EkcLIE~SINSvRVSi~ikqaDeiE~iL~~kf~rFl~~--RA--e~F~ILRR---KPv~-----------  154 (213)
                      ++++|--.++|-.+|+++=+.|=|=+...-.|+-+.++.+-|+.=++.  |+  .+=+||..   .|.+           
T Consensus        20 ~~~~i~YR~~E~~yv~~~~drvTViFs~~F~d~~D~v~gkvFlQEf~daRr~~~~APqvl~s~~~PPlel~~~~~~~~~n   99 (164)
T d1k8kd2          20 NRAVIHYRDDETMYVESKKDRVTVVFSTVFKDDDDVVIGKVFMQEFKEGRRASHTAPQVLFSHREPPLELKDTDAAVGDN   99 (164)
T ss_dssp             CCEEEEEETTEEEEEEECSSCEEEEEEEECSSHHHHHHHHHHHHHHHTGGGTCTTSCEEEEEESSCCGGGTTTTCCCSTT
T ss_pred             ceeEEecCCCccEEEEeCCCcEEEEEEEEecCcchHHHHHHHHHHHHHHhcccCCCCccccCCCCCchHhcCCCcccCCC
Confidence            445565447999999999999999999999999999999999986643  11  23345654   3322           


Q ss_pred             ccceeEeeehhHHHHhhhhhHHHHHHHHHHHHHHHHhhcchhcchhhhHHHHHHHhhh
Q 028136          155 GYDISFLITNYHCEEMQKHKLIDFIVQFMEDIDKEISELKMSVNTRGRLVATEFLKQF  212 (213)
Q Consensus       155 GYDISFLITn~H~E~m~K~kLidFIi~FmeeiDkeIsemKL~lnaRaR~~A~~fl~~f  212 (213)
                      +.-|||.+--.|++.=-+.+.|+.|.+|=.-+-=-|.-=|--+-+|=|.=-++|++-+
T Consensus       100 ~gyvTFvLfpRH~~~~~~~~ti~~i~~FR~YlhYHIKcSKaymHsRMR~Rv~~flkvL  157 (164)
T d1k8kd2         100 IGYITFVLFPRHTNASARDNTINLIHTFRDYLHYHIKCSKAYIHTRMRAKTSDFLKVL  157 (164)
T ss_dssp             EEEEEEEECHHHHSTTTHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             cceEEEEecccccCchhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHH
Confidence            3459999999999877778999999999998887777777777788777777787654