Citrus Sinensis ID: 028143

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210---
Protein Sequence
MRKDQDMDGLRSEEENVIGMFGSDEDVGTQIPTQAQSVVEGSGAVMVSEFKPVPDVDYLQELLAIQQQGPRAIGFFGTRNMGFMHQELIEILSYALVITKNHIYTSGASGTNAAVIRGALRAERPDLLTVILPQSLKKQPPESQELLAKVKTVIEKPHNDHLPLIEASRLCNMDIISHVQQVICFAFHDSRLLMETCQEAKNLRKIVTLFYLD
Secondary Structure (PSIPRED)
cccccccccccccccccccccccccccccccccccccccccccEEEEccccccccHHHHHHHHHHHHHcccEEEEEccccccHHHHHHHHHHHHHHHHHcccEEEccccccHHHHHHHHHHHcccccEEEEEccccccccHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHcEEEEEEEEccHHHHHHHHHHHHcccEEEEEEcc
Secondary Structure Prediction (SSPRO)
ccccccccccccccccccEccccccccccccccccEEEEcccccEEcccccccccHHHHHHHHHHHHccccEEEEEccccHHHHHHHHHHHHHHHHHHcccEEEEccccccHHHHHHHHHHccccccEEEEccccHccccHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHcccEEEEEEEc
Coil and Loop (DISEMBL)
mrkdqdmdglrseeenvigmfgsdedvgtqiptqaqsvvegsgavmvsefkpvpdvDYLQELLAIQQqgpraigffgtrnmgFMHQELIEILSYALVITKnhiytsgasgtNAAVIRGALraerpdlltvilpqslkkqppeSQELLAKVKTVIekphndhlplieasrLCNMDIISHVQQVICFAFHDSRLLMETCQEAKNLRKIVTLFYLD
Flexible Loop (DISEMBL)
mrkdqdmdglrSEEENVIGMFGSDEDVGTQIPTQAQSVVEGSGAVMVSEFKPVPDVDYLQELLAIQQQGPRAIGFFGTRNMGFMHQELIEILSYALVITKNHIYTSGASGTNAAVIRGALRAERPDLLTVILpqslkkqppeSQELLAKVKTVIEKPHNDHLPLIEASRLCNMDIISHVQQVICFAFHDSRLLMETCQEAKNLRKIVTLFYLD
Low Complexity Region (SEG)
MRKDQDMDGLRSEEENVIGMFGSDEDVGTQIPTQAQSVVEGSGAVMVSEFKPVPDVDYLQELLAIQQQGPRAIGFFGTRNMGFMHQELIEILSYALVITKNHIYTSGASGTNAAVIRGALRAERPDLLTVILPQSLKKQPPESQELLAKVKTVIEKPHNDHLPLIEASRLCNMDIISHVQQVICFAFHDSRLLMETCQEAKNLRKIVTLFYLD
Disordered region (IsUnstruct)
*****************************************SGAVMVSEFKPVPDVDYLQELLAIQQQGPRAIGFFGTRNMGFMHQELIEILSYALVITKNHIYTSGASGTNAAVIRGALRAERPDLLTVIL**************LAKVKTVIEKPHNDHLPLIEASRLCNMDIISHVQQVICFAFHDSRLLMETCQEAKNLRKIVTLFYL*
Disordered Region (DISOPRED)
******************GMFGSDEDVGTQIPTQAQSVVEGSGAVMVSEFKPVPDVDYLQELLAIQQQGPRAIGFFGTRNMGFMHQELIEILSYALVITKNHIYTSGASGTNAAVIRGALRAERPDLLTVILP****************VKTVIEKPHNDHLPLIEASRLCNMDIISHVQQVICFAFHDSRLLMETCQEAKNLRKIVTLFYLD
Disordered Region (DISEMBL)
************EEENVIGMFGSDEDVGTQIPTQAQSVVEGSGAVMVSEFKPVPDVDYLQELLAIQQQGPRAIGFFGTRNMGFMHQELIEILSYALVITKNHIYTSGASGTNAAVIRGALRAERPDLLTVILPQSLKKQPPESQELLAKVKTVIEKPHNDHLPLIEASRLCNMDIISHVQQVICFAFHDSRLLMETCQEAKNLRKIVTLFYLD
Disordered Region (DISPRO)
*******************MFGSD*DVGTQIPTQAQSVVEGSGAVMVSEFKPVPDVDYLQELLAIQQQGPRAIGFFGTRNMGFMHQELIEILSYALVITKNHIYTSGASGTNAAVIRGALRAERPDLLTVILPQSLKKQPPESQELLAKVKTVIEKPHNDHLPLIEASRLCNMDIISHVQQVICFAFHDSRLLMETCQEAKNLRKIVTLFYLD
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MRKDQDMDGLRSEEENVIGMFGSDEDVGTQIPTQAQSVVEGSGAVMVSEFKPVPDVDYLQELLAIQQQGPRAIGFFGTRNMGFMHQELIEILSYALVITKNHIYTSGASGTNAAVIRGALRAERPDLLTVILPQSLKKQPPESQELLAKVKTVIEKPHNDHLPLIEASRLCNMDIISHVQQVICFAFHDSRLLMETCQEAKNLRKIVTLFYLD
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

No hits with e-value below 0.001 by BLAST

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	213
224128754	212	predicted protein [Populus trichocarpa]	0.995	1.0	0.896	1e-110
255547516	207	conserved hypothetical protein [Ricinus	0.971	1.0	0.898	1e-108
147771568	213	hypothetical protein VITISV_028411 [Viti	1.0	1.0	0.877	1e-106
359478235	297	PREDICTED: uncharacterized protein LOC10	1.0	0.717	0.877	1e-106
449444096	275	PREDICTED: uncharacterized protein LOC10	1.0	0.774	0.860	1e-105
388516675	288	unknown [Lotus japonicus]	1.0	0.739	0.863	1e-104
296085265	213	unnamed protein product [Vitis vinifera]	1.0	1.0	0.830	1e-102
225462553	286	PREDICTED: uncharacterized protein LOC10	1.0	0.744	0.830	1e-102
30689549	289	uncharacterized protein [Arabidopsis tha	1.0	0.737	0.812	3e-99
297820834	288	hypothetical protein ARALYDRAFT_907505 [	0.981	0.725	0.824	5e-99

>gi|224128754|ref|XP_002328958.1| predicted protein [Populus trichocarpa] gi|222839192|gb|EEE77543.1| predicted protein [Populus trichocarpa]

 Score =  404 bits (1038), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 190/212 (89%), Positives = 204/212 (96%)

Query: 2   RKDQDMDGLRSEEENVIGMFGSDEDVGTQIPTQAQSVVEGSGAVMVSEFKPVPDVDYLQE 61
           R DQ+MD  ++EEEN+  MFGS+ED G+QIPTQAQ++VEGSG V++SEFKPVPDVDYLQE
Sbjct: 1   RNDQEMDSWKAEEENIECMFGSNEDTGSQIPTQAQTIVEGSGTVVLSEFKPVPDVDYLQE 60

Query: 62  LLAIQQQGPRAIGFFGTRNMGFMHQELIEILSYALVITKNHIYTSGASGTNAAVIRGALR 121
           LLAIQQQGPR+IGFFGTRNMGFMHQELIEILSYALVITKNHIYTSGASGTNAAVIRGALR
Sbjct: 61  LLAIQQQGPRSIGFFGTRNMGFMHQELIEILSYALVITKNHIYTSGASGTNAAVIRGALR 120

Query: 122 AERPDLLTVILPQSLKKQPPESQELLAKVKTVIEKPHNDHLPLIEASRLCNMDIISHVQQ 181
           AE+P+LLTVILPQSLKKQPPESQELLAKV+ VIEKPHNDHLPLIEASRLCNMDIISHVQQ
Sbjct: 121 AEKPELLTVILPQSLKKQPPESQELLAKVQNVIEKPHNDHLPLIEASRLCNMDIISHVQQ 180

Query: 182 VICFAFHDSRLLMETCQEAKNLRKIVTLFYLD 213
           VICFAFHDSRLLMETCQEAKNLRKIVTLFYLD
Sbjct: 181 VICFAFHDSRLLMETCQEAKNLRKIVTLFYLD 212

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255547516|ref|XP_002514815.1| conserved hypothetical protein [Ricinus communis] gi|223545866|gb|EEF47369.1| conserved hypothetical protein [Ricinus communis]

 Score =  396 bits (1017), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 186/207 (89%), Positives = 199/207 (96%)

Query: 7   MDGLRSEEENVIGMFGSDEDVGTQIPTQAQSVVEGSGAVMVSEFKPVPDVDYLQELLAIQ 66
           MD  ++EEEN++ MFG DED GTQIPTQAQS+VEGS  V+V+E+KPVPDVDYLQELLAIQ
Sbjct: 1   MDSWKAEEENLVSMFGPDEDTGTQIPTQAQSLVEGSSTVVVAEYKPVPDVDYLQELLAIQ 60

Query: 67  QQGPRAIGFFGTRNMGFMHQELIEILSYALVITKNHIYTSGASGTNAAVIRGALRAERPD 126
           QQGPRAIGFFGTRNMGFMHQELIEILSYALVITKNHI+TSGASGTNAAVIRGALRAE+P+
Sbjct: 61  QQGPRAIGFFGTRNMGFMHQELIEILSYALVITKNHIFTSGASGTNAAVIRGALRAEKPE 120

Query: 127 LLTVILPQSLKKQPPESQELLAKVKTVIEKPHNDHLPLIEASRLCNMDIISHVQQVICFA 186
           LLTVILPQSLKKQPPESQELLAKV+ VIEKPHNDHLPLIEASRLCNMDIISHVQQVICFA
Sbjct: 121 LLTVILPQSLKKQPPESQELLAKVQNVIEKPHNDHLPLIEASRLCNMDIISHVQQVICFA 180

Query: 187 FHDSRLLMETCQEAKNLRKIVTLFYLD 213
           FHDS+LLMETCQEAKNLRKIVTLFYLD
Sbjct: 181 FHDSKLLMETCQEAKNLRKIVTLFYLD 207

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147771568|emb|CAN60471.1| hypothetical protein VITISV_028411 [Vitis vinifera] gi|296084366|emb|CBI24754.3| unnamed protein product [Vitis vinifera]

 Score =  390 bits (1001), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 187/213 (87%), Positives = 200/213 (93%)

Query: 1   MRKDQDMDGLRSEEENVIGMFGSDEDVGTQIPTQAQSVVEGSGAVMVSEFKPVPDVDYLQ 60
           MRKDQD    R EEEN   +F SDE+V +Q+PTQAQS+VEGSGAV+VSEFKPVPDVDYLQ
Sbjct: 1   MRKDQDGGSWRDEEENPGRIFCSDEEVASQVPTQAQSLVEGSGAVLVSEFKPVPDVDYLQ 60

Query: 61  ELLAIQQQGPRAIGFFGTRNMGFMHQELIEILSYALVITKNHIYTSGASGTNAAVIRGAL 120
           ELLAIQQQGPRAIGFFGTRNMGF HQELIEILSYA+VITKNHI+TSGASGTNAAVIRGAL
Sbjct: 61  ELLAIQQQGPRAIGFFGTRNMGFTHQELIEILSYAMVITKNHIFTSGASGTNAAVIRGAL 120

Query: 121 RAERPDLLTVILPQSLKKQPPESQELLAKVKTVIEKPHNDHLPLIEASRLCNMDIISHVQ 180
           RAE+P+LLTVILPQSLK QPPESQELL+KVK VIEKP+NDHLPLIEASRLCNMDIISHVQ
Sbjct: 121 RAEKPELLTVILPQSLKMQPPESQELLSKVKNVIEKPYNDHLPLIEASRLCNMDIISHVQ 180

Query: 181 QVICFAFHDSRLLMETCQEAKNLRKIVTLFYLD 213
           QVICFAFHDS+LLMETCQEAKNLRKIVTLFYLD
Sbjct: 181 QVICFAFHDSKLLMETCQEAKNLRKIVTLFYLD 213

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359478235|ref|XP_002275901.2| PREDICTED: uncharacterized protein LOC100242287 [Vitis vinifera]

 Score =  389 bits (1000), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 187/213 (87%), Positives = 200/213 (93%)

Query: 1   MRKDQDMDGLRSEEENVIGMFGSDEDVGTQIPTQAQSVVEGSGAVMVSEFKPVPDVDYLQ 60
           MRKDQD    R EEEN   +F SDE+V +Q+PTQAQS+VEGSGAV+VSEFKPVPDVDYLQ
Sbjct: 85  MRKDQDGGSWRDEEENPGRIFCSDEEVASQVPTQAQSLVEGSGAVLVSEFKPVPDVDYLQ 144

Query: 61  ELLAIQQQGPRAIGFFGTRNMGFMHQELIEILSYALVITKNHIYTSGASGTNAAVIRGAL 120
           ELLAIQQQGPRAIGFFGTRNMGF HQELIEILSYA+VITKNHI+TSGASGTNAAVIRGAL
Sbjct: 145 ELLAIQQQGPRAIGFFGTRNMGFTHQELIEILSYAMVITKNHIFTSGASGTNAAVIRGAL 204

Query: 121 RAERPDLLTVILPQSLKKQPPESQELLAKVKTVIEKPHNDHLPLIEASRLCNMDIISHVQ 180
           RAE+P+LLTVILPQSLK QPPESQELL+KVK VIEKP+NDHLPLIEASRLCNMDIISHVQ
Sbjct: 205 RAEKPELLTVILPQSLKMQPPESQELLSKVKNVIEKPYNDHLPLIEASRLCNMDIISHVQ 264

Query: 181 QVICFAFHDSRLLMETCQEAKNLRKIVTLFYLD 213
           QVICFAFHDS+LLMETCQEAKNLRKIVTLFYLD
Sbjct: 265 QVICFAFHDSKLLMETCQEAKNLRKIVTLFYLD 297

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449444096|ref|XP_004139811.1| PREDICTED: uncharacterized protein LOC101209189 [Cucumis sativus] gi|449492610|ref|XP_004159047.1| PREDICTED: uncharacterized LOC101209189 [Cucumis sativus]

 Score =  385 bits (988), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 185/215 (86%), Positives = 200/215 (93%), Gaps = 2/215 (0%)

Query: 1   MRKDQDMDGLRSEEENVIGMFG--SDEDVGTQIPTQAQSVVEGSGAVMVSEFKPVPDVDY 58
           +R D D D    ++ N + MFG  S+++ GTQIPTQAQS+VEGSG+VMVSEFKPVPDVDY
Sbjct: 61  IRGDTDGDSSVPQKNNTMRMFGFGSNDETGTQIPTQAQSIVEGSGSVMVSEFKPVPDVDY 120

Query: 59  LQELLAIQQQGPRAIGFFGTRNMGFMHQELIEILSYALVITKNHIYTSGASGTNAAVIRG 118
           LQELLAIQQQGPRAIGFFGTRNMGF+HQELIEILSYA+VITKNHIYTSGASGTNAAVIRG
Sbjct: 121 LQELLAIQQQGPRAIGFFGTRNMGFLHQELIEILSYAMVITKNHIYTSGASGTNAAVIRG 180

Query: 119 ALRAERPDLLTVILPQSLKKQPPESQELLAKVKTVIEKPHNDHLPLIEASRLCNMDIISH 178
           ALRAE+P+LLTVILPQSLKKQPPESQELL+KV+ VIEKPHNDHL LIEASRLCNMDIISH
Sbjct: 181 ALRAEKPELLTVILPQSLKKQPPESQELLSKVRNVIEKPHNDHLSLIEASRLCNMDIISH 240

Query: 179 VQQVICFAFHDSRLLMETCQEAKNLRKIVTLFYLD 213
           VQQVICFAFHDSRLLMETCQEAKNLRKIVTLFYLD
Sbjct: 241 VQQVICFAFHDSRLLMETCQEAKNLRKIVTLFYLD 275

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388516675|gb|AFK46399.1| unknown [Lotus japonicus]

 Score =  384 bits (986), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 184/213 (86%), Positives = 196/213 (92%)

Query: 1   MRKDQDMDGLRSEEENVIGMFGSDEDVGTQIPTQAQSVVEGSGAVMVSEFKPVPDVDYLQ 60
           M++DQD      E EN +G+FGSDE  GTQIPTQAQS+VEG GA+ V+E+KPVPDVDYLQ
Sbjct: 76  MKRDQDRHTPDYELENGLGLFGSDEQRGTQIPTQAQSLVEGPGAIRVAEYKPVPDVDYLQ 135

Query: 61  ELLAIQQQGPRAIGFFGTRNMGFMHQELIEILSYALVITKNHIYTSGASGTNAAVIRGAL 120
           ELLAIQQQGPRAIGFFGTRNMGFMHQELIEILSYA+VITKNHIYT GASGTNAAVIRGAL
Sbjct: 136 ELLAIQQQGPRAIGFFGTRNMGFMHQELIEILSYAMVITKNHIYTPGASGTNAAVIRGAL 195

Query: 121 RAERPDLLTVILPQSLKKQPPESQELLAKVKTVIEKPHNDHLPLIEASRLCNMDIISHVQ 180
           RAE+PD LTVILPQSL KQPPESQELL+KVK VIEKP+NDHLPLIEASRLCNMDIIS VQ
Sbjct: 196 RAEKPDFLTVILPQSLSKQPPESQELLSKVKKVIEKPYNDHLPLIEASRLCNMDIISKVQ 255

Query: 181 QVICFAFHDSRLLMETCQEAKNLRKIVTLFYLD 213
           QVICFAFHDSRLLMETCQEAKNLRKIVTLFYLD
Sbjct: 256 QVICFAFHDSRLLMETCQEAKNLRKIVTLFYLD 288

Source: Lotus japonicus

Species: Lotus japonicus

Genus: Lotus

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|296085265|emb|CBI28997.3| unnamed protein product [Vitis vinifera]

 Score =  376 bits (965), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 177/213 (83%), Positives = 202/213 (94%)

Query: 1   MRKDQDMDGLRSEEENVIGMFGSDEDVGTQIPTQAQSVVEGSGAVMVSEFKPVPDVDYLQ 60
           MR+DQDMD  R++E N + MFGSD++V TQ+PTQAQSVVEGSG+++VS ++PV D+DYLQ
Sbjct: 1   MRRDQDMDSSRNDEVNGVHMFGSDDEVFTQVPTQAQSVVEGSGSLLVSGYEPVTDMDYLQ 60

Query: 61  ELLAIQQQGPRAIGFFGTRNMGFMHQELIEILSYALVITKNHIYTSGASGTNAAVIRGAL 120
           ELLAIQQ+GPRAIGFFGTRNMGF+HQELIEILSYA+VIT+NHIYTSGASGTNAAVIRGAL
Sbjct: 61  ELLAIQQEGPRAIGFFGTRNMGFLHQELIEILSYAMVITENHIYTSGASGTNAAVIRGAL 120

Query: 121 RAERPDLLTVILPQSLKKQPPESQELLAKVKTVIEKPHNDHLPLIEASRLCNMDIISHVQ 180
           RAE+P+LLTVILPQSLKKQPPESQELL+KV+ VIEKPHNDHL LIEASRLCN+DII+ VQ
Sbjct: 121 RAEKPELLTVILPQSLKKQPPESQELLSKVQNVIEKPHNDHLHLIEASRLCNLDIITCVQ 180

Query: 181 QVICFAFHDSRLLMETCQEAKNLRKIVTLFYLD 213
           QVICFAFHDS+LLMETCQEA+NLRKIVTLFYLD
Sbjct: 181 QVICFAFHDSKLLMETCQEARNLRKIVTLFYLD 213

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225462553|ref|XP_002267280.1| PREDICTED: uncharacterized protein LOC100261763 [Vitis vinifera]

 Score =  375 bits (963), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 177/213 (83%), Positives = 202/213 (94%)

Query: 1   MRKDQDMDGLRSEEENVIGMFGSDEDVGTQIPTQAQSVVEGSGAVMVSEFKPVPDVDYLQ 60
           MR+DQDMD  R++E N + MFGSD++V TQ+PTQAQSVVEGSG+++VS ++PV D+DYLQ
Sbjct: 74  MRRDQDMDSSRNDEVNGVHMFGSDDEVFTQVPTQAQSVVEGSGSLLVSGYEPVTDMDYLQ 133

Query: 61  ELLAIQQQGPRAIGFFGTRNMGFMHQELIEILSYALVITKNHIYTSGASGTNAAVIRGAL 120
           ELLAIQQ+GPRAIGFFGTRNMGF+HQELIEILSYA+VIT+NHIYTSGASGTNAAVIRGAL
Sbjct: 134 ELLAIQQEGPRAIGFFGTRNMGFLHQELIEILSYAMVITENHIYTSGASGTNAAVIRGAL 193

Query: 121 RAERPDLLTVILPQSLKKQPPESQELLAKVKTVIEKPHNDHLPLIEASRLCNMDIISHVQ 180
           RAE+P+LLTVILPQSLKKQPPESQELL+KV+ VIEKPHNDHL LIEASRLCN+DII+ VQ
Sbjct: 194 RAEKPELLTVILPQSLKKQPPESQELLSKVQNVIEKPHNDHLHLIEASRLCNLDIITCVQ 253

Query: 181 QVICFAFHDSRLLMETCQEAKNLRKIVTLFYLD 213
           QVICFAFHDS+LLMETCQEA+NLRKIVTLFYLD
Sbjct: 254 QVICFAFHDSKLLMETCQEARNLRKIVTLFYLD 286

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|30689549|ref|NP_850404.1| uncharacterized protein [Arabidopsis thaliana] gi|330255257|gb|AEC10351.1| uncharacterized protein [Arabidopsis thaliana]

 Score =  366 bits (940), Expect = 3e-99,   Method: Compositional matrix adjust.
 Identities = 173/213 (81%), Positives = 195/213 (91%)

Query: 1   MRKDQDMDGLRSEEENVIGMFGSDEDVGTQIPTQAQSVVEGSGAVMVSEFKPVPDVDYLQ 60
           MR  ++ + L  +++++  +  SDED G +IPTQAQ++VEGSG+V VSE KP  DVDY+Q
Sbjct: 77  MRNQENTEILTDKDDHIECVLESDEDSGLRIPTQAQAIVEGSGSVAVSELKPAADVDYIQ 136

Query: 61  ELLAIQQQGPRAIGFFGTRNMGFMHQELIEILSYALVITKNHIYTSGASGTNAAVIRGAL 120
           ELLAIQQQGPR+IGFFGTRNMGFMHQELIEILSYA+VITKNHIYTSGASGTNAAVIRGAL
Sbjct: 137 ELLAIQQQGPRSIGFFGTRNMGFMHQELIEILSYAMVITKNHIYTSGASGTNAAVIRGAL 196

Query: 121 RAERPDLLTVILPQSLKKQPPESQELLAKVKTVIEKPHNDHLPLIEASRLCNMDIISHVQ 180
           RAERP+LLTVILPQSLKKQPPESQELL+KV+ V+EKPHNDHLPL+EASRLCNMDIIS VQ
Sbjct: 197 RAERPELLTVILPQSLKKQPPESQELLSKVQNVVEKPHNDHLPLLEASRLCNMDIISQVQ 256

Query: 181 QVICFAFHDSRLLMETCQEAKNLRKIVTLFYLD 213
           QVICFAFHDS+LLMETCQEAKNLRKIVTLFYLD
Sbjct: 257 QVICFAFHDSKLLMETCQEAKNLRKIVTLFYLD 289

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297820834|ref|XP_002878300.1| hypothetical protein ARALYDRAFT_907505 [Arabidopsis lyrata subsp. lyrata] gi|297324138|gb|EFH54559.1| hypothetical protein ARALYDRAFT_907505 [Arabidopsis lyrata subsp. lyrata]

 Score =  365 bits (938), Expect = 5e-99,   Method: Compositional matrix adjust.
 Identities = 174/211 (82%), Positives = 194/211 (91%), Gaps = 2/211 (0%)

Query: 5   QDMDGLRSEEENVIGMFGSDEDV--GTQIPTQAQSVVEGSGAVMVSEFKPVPDVDYLQEL 62
           +D+D   ++EENV   F SDED   G +IPTQAQ++VEG G+V VSE +PVPDVDY+QEL
Sbjct: 78  EDVDSWMNKEENVTCRFESDEDTTTGLRIPTQAQAIVEGPGSVAVSELQPVPDVDYIQEL 137

Query: 63  LAIQQQGPRAIGFFGTRNMGFMHQELIEILSYALVITKNHIYTSGASGTNAAVIRGALRA 122
           LAIQQQGPR IGFFGTRNMGFMHQELI+ILSYA+VITKNHIYTSGA+GTNAAVIRGALRA
Sbjct: 138 LAIQQQGPRTIGFFGTRNMGFMHQELIQILSYAMVITKNHIYTSGAAGTNAAVIRGALRA 197

Query: 123 ERPDLLTVILPQSLKKQPPESQELLAKVKTVIEKPHNDHLPLIEASRLCNMDIISHVQQV 182
           ERP+LLTVILPQSLKKQPPESQELL+KV+ VIEKPHNDHLPL+EASRLCN+DIIS VQQ+
Sbjct: 198 ERPELLTVILPQSLKKQPPESQELLSKVQNVIEKPHNDHLPLLEASRLCNIDIISQVQQI 257

Query: 183 ICFAFHDSRLLMETCQEAKNLRKIVTLFYLD 213
           ICFAFHDS+LLMETCQEAKNLRKIVTLFYLD
Sbjct: 258 ICFAFHDSKLLMETCQEAKNLRKIVTLFYLD 288

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	213
TAIR|locus:1005716651	289	AT2G43945 [Arabidopsis thalian	1.0	0.737	0.812	4e-90
TAIR|locus:2080452	288	AT3G59870 "AT3G59870" [Arabido	0.990	0.732	0.804	1.2e-88

TAIR|locus:1005716651 AT2G43945 [Arabidopsis thaliana (taxid:3702)]

 Score = 899 (321.5 bits), Expect = 4.0e-90, P = 4.0e-90
 Identities = 173/213 (81%), Positives = 195/213 (91%)

Query:     1 MRKDQDMDGLRSEEENVIGMFGSDEDVGTQIPTQAQSVVEGSGAVMVSEFKPVPDVDYLQ 60
             MR  ++ + L  +++++  +  SDED G +IPTQAQ++VEGSG+V VSE KP  DVDY+Q
Sbjct:    77 MRNQENTEILTDKDDHIECVLESDEDSGLRIPTQAQAIVEGSGSVAVSELKPAADVDYIQ 136

Query:    61 ELLAIQQQGPRAIGFFGTRNMGFMHQELIEILSYALVITKNHIYTSGASGTNAAVIRGAL 120
             ELLAIQQQGPR+IGFFGTRNMGFMHQELIEILSYA+VITKNHIYTSGASGTNAAVIRGAL
Sbjct:   137 ELLAIQQQGPRSIGFFGTRNMGFMHQELIEILSYAMVITKNHIYTSGASGTNAAVIRGAL 196

Query:   121 RAERPDLLTVILPQSLKKQPPESQELLAKVKTVIEKPHNDHLPLIEASRLCNMDIISHVQ 180
             RAERP+LLTVILPQSLKKQPPESQELL+KV+ V+EKPHNDHLPL+EASRLCNMDIIS VQ
Sbjct:   197 RAERPELLTVILPQSLKKQPPESQELLSKVQNVVEKPHNDHLPLLEASRLCNMDIISQVQ 256

Query:   181 QVICFAFHDSRLLMETCQEAKNLRKIVTLFYLD 213
             QVICFAFHDS+LLMETCQEAKNLRKIVTLFYLD
Sbjct:   257 QVICFAFHDSKLLMETCQEAKNLRKIVTLFYLD 289

GO:0009507 "chloroplast" evidence=ISM;IDA

GO:0009570 "chloroplast stroma" evidence=IDA

GO:0010207 "photosystem II assembly" evidence=RCA

TAIR|locus:2080452 AT3G59870 "AT3G59870" [Arabidopsis thaliana (taxid:3702)]

 Score = 885 (316.6 bits), Expect = 1.2e-88, P = 1.2e-88
 Identities = 173/215 (80%), Positives = 195/215 (90%)

Query:     3 KDQD-MDGLRSEEENVIGMFGSDEDV---GTQIPTQAQSVVEGSGAVMVSEFKPVPDVDY 58
             +DQD +D   ++E+NV   F SDED    G +IPTQAQ++VEG G++ VSE + VPDVDY
Sbjct:    74 RDQDDVDSWVNKEDNVTCRFDSDEDTTTTGLRIPTQAQAIVEGPGSLAVSELQRVPDVDY 133

Query:    59 LQELLAIQQQGPRAIGFFGTRNMGFMHQELIEILSYALVITKNHIYTSGASGTNAAVIRG 118
             +QELLAIQQQGPR IGFFGTRNMGFMHQELI+ILSYA+VITKNHIYTSGA+GTNAAVIRG
Sbjct:   134 IQELLAIQQQGPRTIGFFGTRNMGFMHQELIQILSYAMVITKNHIYTSGAAGTNAAVIRG 193

Query:   119 ALRAERPDLLTVILPQSLKKQPPESQELLAKVKTVIEKPHNDHLPLIEASRLCNMDIISH 178
             ALRAERP+LLTVILPQSLKKQPPESQELL+KV+ VIEKPHNDHLPL+EASRLCNMDIIS 
Sbjct:   194 ALRAERPELLTVILPQSLKKQPPESQELLSKVQNVIEKPHNDHLPLLEASRLCNMDIISQ 253

Query:   179 VQQVICFAFHDSRLLMETCQEAKNLRKIVTLFYLD 213
             VQQ+ICFAFHDS+LLMETCQEA+NLRKIVTLFYLD
Sbjct:   254 VQQIICFAFHDSKLLMETCQEARNLRKIVTLFYLD 288


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.320   0.136   0.383    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      213       213   0.00084  112 3  11 22  0.36    33
                                                     31  0.49    35


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  2
  No. of states in DFA:  571 (61 KB)
  Total size of DFA:  154 KB (2093 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  18.67u 0.16s 18.83t   Elapsed:  00:00:01
  Total cpu time:  18.67u 0.16s 18.83t   Elapsed:  00:00:01
  Start:  Fri May 10 04:37:43 2013   End:  Fri May 10 04:37:44 2013

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

GO:0009507 "chloroplast" evidence=ISM;IDA

GO:0009570 "chloroplast stroma" evidence=IDA

GO:0010207 "photosystem II assembly" evidence=RCA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	gw1.87.73.1	hypothetical protein (212 aa)
		(Populus trichocarpa)
Predicted Functional Partners:
	gw1.X.329.1	annotation not avaliable (189 aa)			•						0.506
	eugene3.12600001	hypothetical protein (157 aa)			•						0.506
	eugene3.00100819	SubName- Full=Putative uncharacterized protein; (202 aa)			•						0.506
	eugene3.00081422	SubName- Full=Putative uncharacterized protein; (205 aa)			•						0.506
	gw1.I.8641.1	annotation not avaliable (113 aa)			•						0.505
	gw1.XIII.355.1	hypothetical protein (158 aa)			•						0.504
	gw1.IV.2700.1	hypothetical protein (68 aa)			•						0.504
	gw1.II.3817.1	photosystem II reaction center protein H PsbH (67 aa)			•						0.504
	grail3.20888000101	hypothetical protein (69 aa)			•						0.504
	gw1.II.3234.1	annotation not avaliable (153 aa)			•						0.503

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	213
PF02481	212	DNA_processg_A: DNA recombination-mediator protein	99.1
TIGR00732	220	dprA DNA protecting protein DprA. Disruption of th	98.48
TIGR00725	159	conserved hypothetical protein, DprA/Smf-related,	97.71
PRK10736	374	hypothetical protein; Provisional	97.35
COG0758	350	Smf Predicted Rossmann fold nucleotide-binding pro	95.83
PF06908	177	DUF1273: Protein of unknown function (DUF1273); In	95.04
TIGR00730	178	conserved hypothetical protein, DprA/Smf-related,	93.71
PRK13660	182	hypothetical protein; Provisional	92.02
COG1611	205	Predicted Rossmann fold nucleotide-binding protein	87.16

>PF02481 DNA_processg_A: DNA recombination-mediator protein A; InterPro: IPR003488 The SMF family, of DNA processing chain A, dprA, are a group of bacterial proteins

Probab=99.10  E-value=1.3e-09  Score=90.76  Aligned_cols=139  Identities=22%  Similarity=0.193  Sum_probs=96.1

Q ss_pred             cCCceEEEecccccchhHHHHHHHHHHHHHHhcCceeecCCCCchHHHHHhhhhhcCCCceeEeecccccC-CChhHHHH
Q 028143           68 QGPRAIGFFGTRNMGFMHQELIEILSYALVITKNHIYTSGASGTNAAVIRGALRAERPDLLTVILPQSLKK-QPPESQEL  146 (213)
Q Consensus        68 ~g~rria~lGsRhv~~~hq~LIEllsyAlvl~gn~i~TSGA~GtNaAvIRGalrae~p~lLTViLPQSL~k-Qp~Esrel  146 (213)
                      .-.+.|||.|||+..=-..+..+-+.+.|+..|..|++.+|.|+.+++.+|||++ +...+ +|||..|++ .|++.+++
T Consensus        42 ~~~~~iaIvGsR~~s~~g~~~a~~l~~~l~~~g~~vvSGlA~GiD~~ah~~al~~-~g~tI-aVl~~gl~~~yP~~n~~l  119 (212)
T PF02481_consen   42 NKQPSIAIVGSRNPSEYGLKFAKKLARELAKAGIVVVSGLAKGIDAAAHRGALDA-GGPTI-AVLACGLDNIYPKENREL  119 (212)
T ss_dssp             GGS-EEEEE--SS--HHHHHHHHHHHHHHHHHT-EEEE---TTHHHHHHHHHTTT----EE-EE-SS-TTS-SSGGGHHH
T ss_pred             ccCceEEEEcCCCCCHHHHHHHHHHHHHHhhCCEEEEcCCCCCHHHHHHHHHHHc-cCCEE-EEECCCcccccchhhHHH
Confidence            3478999999999999999999999999999999999999999999999999999 44444 457999987 59999999


Q ss_pred             HHHhh-h----HhcCCCCCCCChHHHHhhhhHHHHhhhceeeeEeeeCchHHHHHHHHHhhccCeeEE
Q 028143          147 LAKVK-T----VIEKPHNDHLPLIEASRLCNMDIISHVQQVICFAFHDSRLLMETCQEAKNLRKIVTL  209 (213)
Q Consensus       147 Le~V~-~----lvE~penD~LpL~eAS~lCN~eIisr~qQlIcFAFHDS~tLl~tc~eAe~~~KvVTL  209 (213)
                      .+++. +    +=|-|-... |....-.-.|+=|..-++.+|.......---+.|++.|.+++|-|-.
T Consensus       120 ~~~i~~~~glliSe~~p~~~-~~~~~f~~RNRiiaaLs~~~vvvea~~~sGt~~ta~~A~~~gr~v~~  186 (212)
T PF02481_consen  120 AERILDEGGLLISEYPPGTK-PSRWRFPERNRIIAALSDAVVVVEAGEKSGTLHTARFALEQGRPVFA  186 (212)
T ss_dssp             HHHHHHTT-EEEE-S-TT-----TTHHHHHHHHHHHH-S-EEE----TT-THHHHHHHHHHHT--EEE
T ss_pred             HHHHHhcCcEEEeCCCCCCC-cccccChHHHHHHHHhCCeEEEEecCCCChHHHHHHHHHHcCCeEEE
Confidence            99998 4    446565554 66666667899999999999999987777778999999999997754

In Helicobacter pylori, dprA is required for natural chromosomal and plasmid transformation []. It has now been shown that DprA is found to bind cooperatively to single-stranded DNA (ssDNA) and to interact with RecA. In the process, DprA-RecA-ssDNA filaments are produced and these filaments catalyse the homology-dependent formation of joint molecules. While the Escherichia coli SSB protein limits access of RecA to ssDNA, DprA alleviates this barrier. It is proposed that DprA is a new member of the recombination-mediator protein family, dedicated to natural bacterial transformation [].; GO: 0009294 DNA mediated transformation; PDB: 3MAJ_A.

>TIGR00732 dprA DNA protecting protein DprA

Probab=98.48  E-value=4.3e-06  Score=70.47  Aligned_cols=136  Identities=20%  Similarity=0.193  Sum_probs=109.2

Q ss_pred             ceEEEecccccchhHHHHHHHHHHHHHHhcCceeecCCCCchHHHHHhhhhhcCCCceeEeecccccCC-ChhHHHHHHH
Q 028143           71 RAIGFFGTRNMGFMHQELIEILSYALVITKNHIYTSGASGTNAAVIRGALRAERPDLLTVILPQSLKKQ-PPESQELLAK  149 (213)
Q Consensus        71 rria~lGsRhv~~~hq~LIEllsyAlvl~gn~i~TSGA~GtNaAvIRGalrae~p~lLTViLPQSL~kQ-p~EsrelLe~  149 (213)
                      +.|||.|||+..--...+.+-+++.|+..|-.|+|-||-|+-+++.|||+.+..  .--.|||..|++- |++.+++.++
T Consensus        45 ~~iaIvGsR~~s~~~~~~a~~l~~~l~~~g~~IVSG~A~GiD~~ah~~al~~~g--~tIaVl~~gld~~yp~~n~~l~~~  122 (220)
T TIGR00732        45 RKVAIVGTRRPTKYGERWTRKLAEELAKNGVTIVSGLALGIDGIAHKAALKVNG--RTIAVLGTGLDQIYPRQNSKLAAK  122 (220)
T ss_pred             CeEEEEcCCCCCHHHHHHHHHHHHHHHhCCCEEEcCchhhHHHHHHHHHHHcCC--CEEEEECCCCccCCchhhHHHHHH
Confidence            789999999998889999999999999999999999999999999999999832  3335899999886 7889999998


Q ss_pred             hhh-----HhcCCCCCCCChHHHHhhhhHHHHhhhceeeeEeee-CchHHHHHHHHHhhccCeeEEe
Q 028143          150 VKT-----VIEKPHNDHLPLIEASRLCNMDIISHVQQVICFAFH-DSRLLMETCQEAKNLRKIVTLF  210 (213)
Q Consensus       150 V~~-----lvE~penD~LpL~eAS~lCN~eIisr~qQlIcFAFH-DS~tLl~tc~eAe~~~KvVTLf  210 (213)
                      +..     +=|-|...+ |....-..-|+=|..-++-+|-|--= .|-| |.|++.|.+++|-|-.+
T Consensus       123 i~~~gglliSe~p~~~~-~~~~~f~~RNriia~ls~~vivve~~~~sGt-l~ta~~A~~~gr~v~~~  187 (220)
T TIGR00732       123 IAENGGLLLSEYPPDTK-PIKYNFPKRNRIISGLSRAVLVVEAPLKSGA-LITARYALEQGREVFAY  187 (220)
T ss_pred             HHHcCCEEEEecCCCCC-CCcccHHHHHHHHHHhcCEEEEEECCCCCch-HHHHHHHHHhCCcEEEE
Confidence            863     446666443 54444456788888888888877643 4656 57899999999977544

Disruption of this gene in both Haemophilus influenzae and Helicobacter pylori drastically reduces the efficiency of transformation with exogenous DNA, but with different levels of effect on chromosomal (linear) and plasmid (circular) DNA. This difference suggests the DprA is not active in recombination, and it has been shown not to affect DNA binding, leaving the intermediate step in natural transformation, DNA processing. In Strep. pneumoniae, inactivation of dprA had no effect on the uptake of DNA. All of these data indicated that DprA is required at a later stage in transformation. Subsequently DprA and RecA were both shown in S. pneumoniae to be required to protect incoming ssDNA from immediate degradation. Role of DprA in non-transformable species is not known. The gene symbol smf was assigned in E. coli, but without assignment of function.

>TIGR00725 conserved hypothetical protein, DprA/Smf-related, family 1

Probab=97.71  E-value=0.00045  Score=55.66  Aligned_cols=121  Identities=21%  Similarity=0.174  Sum_probs=86.5

Q ss_pred             ceEEEecccccchhHHHHHHHHHHHHHHhcCceeecCCCCchHHHHHhhhhhcCCCceeEeecccccCCChhHHHHHHHh
Q 028143           71 RAIGFFGTRNMGFMHQELIEILSYALVITKNHIYTSGASGTNAAVIRGALRAERPDLLTVILPQSLKKQPPESQELLAKV  150 (213)
Q Consensus        71 rria~lGsRhv~~~hq~LIEllsyAlvl~gn~i~TSGA~GtNaAvIRGalrae~p~lLTViLPQSL~kQp~EsrelLe~V  150 (213)
                      ++||++|||+.+=-+++..+-+.+.|+..|+.|++=|+.|.=.|+-|||+++ .... .=|||+.+.. +.+   .+   
T Consensus         2 ~~I~V~gss~~~~~~~~~A~~lg~~La~~g~~lv~Gg~~GlM~a~a~ga~~~-gg~v-iGVlp~~l~~-~~~---~~---   72 (159)
T TIGR00725         2 VQIGVIGSSNKSEELYEIAYRLGKELAKKGHILINGGRTGVMEAVSKGAREA-GGLV-VGILPDEDFA-GNP---YL---   72 (159)
T ss_pred             eEEEEEeCCCCChHHHHHHHHHHHHHHHCCCEEEcCCchhHHHHHHHHHHHC-CCeE-EEECChhhcc-CCC---Cc---
Confidence            7899999999988999999999999999999999978899999999999988 3322 3368988741 100   00   


Q ss_pred             hhHhcCCCCCCCChHHHHhhhhHHHHhhhceeeeEeeeCchHHHHHHHHHhhccCeeEEee
Q 028143          151 KTVIEKPHNDHLPLIEASRLCNMDIISHVQQVICFAFHDSRLLMETCQEAKNLRKIVTLFY  211 (213)
Q Consensus       151 ~~lvE~penD~LpL~eAS~lCN~eIisr~qQlIcFAFHDS~tLl~tc~eAe~~~KvVTLfy  211 (213)
                       .++ .+ .+.+    ..|  |+-++..+|=+|.+. -=+=||-|.. +|-.++|-|-+++
T Consensus        73 -~~~-i~-~~~~----~~R--k~~m~~~sda~Ivlp-GG~GTL~E~~-~a~~~~kpv~~l~  122 (159)
T TIGR00725        73 -TIK-VK-TGMN----FAR--NFILVRSADVVVSVG-GGYGTAIEIL-GAYALGGPVVVLR  122 (159)
T ss_pred             -eEE-EE-CCCc----chH--HHHHHHHCCEEEEcC-CchhHHHHHH-HHHHcCCCEEEEE
Confidence             000 01 1111    113  888999999999987 4566765554 4556788776653

This model represents one branch of a subfamily of uncharacterized proteins. Both PSI-BLAST and weak hits by this model show a low level of similarity and suggest an evolutionary relationship of the subfamily to the DprA/Smf family of DNA-processing proteins involved in chromosomal transformation with foreign DNA. Both Aquifex aeolicus and Mycobacterium leprae have one member in each of two branches of this subfamily, suggesting the branches may have distinct functions. This family is one of several families within the scope of PFAM model pfam03641, several members of which are annotated as lysine decarboxylases. That larger family, and the branch described by this model, have a well-conserved motif PGGXGTXXE.

>PRK10736 hypothetical protein; Provisional

Probab=97.35  E-value=0.0043  Score=57.29  Aligned_cols=135  Identities=19%  Similarity=0.167  Sum_probs=104.2

Q ss_pred             ceEEEecccccchhHHHHHHHHHHHHHHhcCceeecCCCCchHHHHHhhhhhcCCCceeEeecccccC-CChhHHHHHHH
Q 028143           71 RAIGFFGTRNMGFMHQELIEILSYALVITKNHIYTSGASGTNAAVIRGALRAERPDLLTVILPQSLKK-QPPESQELLAK  149 (213)
Q Consensus        71 rria~lGsRhv~~~hq~LIEllsyAlvl~gn~i~TSGA~GtNaAvIRGalrae~p~lLTViLPQSL~k-Qp~EsrelLe~  149 (213)
                      +.|||.|||++.---....+-+++.|+..|-.|+.-+|-|.-+++-+|||.+..+  --.||+-.|++ -|+|.+++.++
T Consensus       108 ~~iaiVGsR~~s~yg~~~~~~l~~~la~~g~~IVSGlA~GiD~~AH~~aL~~~g~--TIaVlg~Gld~~YP~~n~~L~~~  185 (374)
T PRK10736        108 PQLAVVGSRAHSWYGERWGRLFCEELAKNGLTITSGLARGIDGVAHRAALQAGGK--TIAVLGNGLENIYPRRHARLAES  185 (374)
T ss_pred             CeEEEECCCCCCHHHHHHHHHHHHHHHHCCCEEECcchhhHHHHHHHHHHHcCCC--EEEEECCCCCccCCHhHHHHHHH
Confidence            6799999999999999999999999999887666666799999999999998432  34489999987 58899999999


Q ss_pred             hhh-----HhcCCCCCCCChHHHHhhhhHHHHhhhceeeeEeee-CchHHHHHHHHHhhccCeeEE
Q 028143          150 VKT-----VIEKPHNDHLPLIEASRLCNMDIISHVQQVICFAFH-DSRLLMETCQEAKNLRKIVTL  209 (213)
Q Consensus       150 V~~-----lvE~penD~LpL~eAS~lCN~eIisr~qQlIcFAFH-DS~tLl~tc~eAe~~~KvVTL  209 (213)
                      +..     +=|-|-+-+ |...---..|+=|-.-++-+|-.--- .|-+ |-|++.|-+++|-|--
T Consensus       186 I~~~~G~liSEyp~~~~-p~~~~Fp~RNRIIagLS~~viVvEA~~kSGs-liTA~~Al~~gR~Vfa  249 (374)
T PRK10736        186 IIEQGGALVSEFPLDTP-PLAANFPRRNRIISGLSKGVLVVEAALRSGS-LVTARCALEQGRDVFA  249 (374)
T ss_pred             HHhcCCEEEECCCCCCC-CChhhhhHhhhHHHHhCCeEEEEEeCCCCch-HHHHHHHHHhCCeEEE
Confidence            833     346666532 32333334688888888888776444 4555 6699999999998754

>COG0758 Smf Predicted Rossmann fold nucleotide-binding protein involved in DNA uptake [DNA replication, recombination, and repair / Intracellular trafficking and secretion]

Probab=95.83  E-value=0.27  Score=45.35  Aligned_cols=130  Identities=21%  Similarity=0.159  Sum_probs=100.2

Q ss_pred             ceEEEecccccchhHHHHHHHHHHHHHHhcCceeecCCCCchHHHHHhhhhhcCCCceeE-eecccccCC-ChhHHHHHH
Q 028143           71 RAIGFFGTRNMGFMHQELIEILSYALVITKNHIYTSGASGTNAAVIRGALRAERPDLLTV-ILPQSLKKQ-PPESQELLA  148 (213)
Q Consensus        71 rria~lGsRhv~~~hq~LIEllsyAlvl~gn~i~TSGA~GtNaAvIRGalrae~p~lLTV-iLPQSL~kQ-p~EsrelLe  148 (213)
                      +.+||.|||+++-.-.+..+.++..|+..|--|++-+|-|.-+++-.+||.+.   -.|| ||.-.+++= |++-+.+.+
T Consensus       112 ~~vaIVGsR~~S~~g~~~~~~~a~~L~~~g~~IvSGlA~GID~~AH~aaL~~~---G~TiaVl~~Gld~iYP~~n~~l~~  188 (350)
T COG0758         112 PSVAIVGSRKPSKYGLDYTRDLAEYLAQNGITIVSGLARGIDTEAHKAALNAG---GKTIAVLATGLDKIYPRENIKLAE  188 (350)
T ss_pred             CceEEEeCCCCCHhHHHHHHHHHHHHHhCCeEEEecCcceecHHHHHHHHHcC---CcEEEEEcCCCCccCChhhHHHHH
Confidence            68999999999999999999999999999999999999999999999999994   3365 677777774 667777777


Q ss_pred             HhhhH----hcCCC-----CCCCChHHHHhhhhHHHHhhhceeeeEeeeCchHHHHHHHHHhhccCeeEE
Q 028143          149 KVKTV----IEKPH-----NDHLPLIEASRLCNMDIISHVQQVICFAFHDSRLLMETCQEAKNLRKIVTL  209 (213)
Q Consensus       149 ~V~~l----vE~pe-----nD~LpL~eAS~lCN~eIisr~qQlIcFAFHDS~tLl~tc~eAe~~~KvVTL  209 (213)
                      ++..-    =|.|-     .-+.|-      =|+=|-.-++=+++.-.=---==|-||+.|-+|++.|-.
T Consensus       189 ~i~~~g~liSEypp~~~p~~~~Fp~------RNRiIagLS~gvlVvEA~~kSGSLiTA~~AleqgR~Vfa  252 (350)
T COG0758         189 KIAENGLLISEYPPDTEPNKGNFPR------RNRLIAGLSDGVLVVEAGLKSGSLITAKYALEQGRDVFA  252 (350)
T ss_pred             HHHhcCeEEeecCCCCCcccccchH------HHHHHHHhcCceEEEecCcccccHHHHHHHHHcCCeeEE
Confidence            76542    24443     333332      377777788888887554333335689999999998753

>PF06908 DUF1273: Protein of unknown function (DUF1273); InterPro: IPR024718 This entry represents a functionally uncharacterised domain

Probab=95.04  E-value=0.67  Score=38.67  Aligned_cols=142  Identities=17%  Similarity=0.117  Sum_probs=74.4

Q ss_pred             ceEEEeccccc------------chhHHHHHHHHHHHHHHhcCceeecCCCCchH--HHHHhhhhhcCCCc-eeEeeccc
Q 028143           71 RAIGFFGTRNM------------GFMHQELIEILSYALVITKNHIYTSGASGTNA--AVIRGALRAERPDL-LTVILPQS  135 (213)
Q Consensus        71 rria~lGsRhv------------~~~hq~LIEllsyAlvl~gn~i~TSGA~GtNa--AvIRGalrae~p~l-LTViLPQS  135 (213)
                      |+|+|-|-|..            .++-..|-+.+..++-.+=-++||+||-|+=.  |-+--.|+.+-|++ |.+++|=.
T Consensus         2 ~~~~~TGyR~~eL~~f~~~~~~~~~ik~~L~~~i~~lie~G~~~fi~GgalG~D~waae~vl~LK~~yp~ikL~~v~Pf~   81 (177)
T PF06908_consen    2 KRCCFTGYRPYELGIFNEKDPKIQVIKKALKKQIIELIEEGVRWFITGGALGVDLWAAEVVLELKKEYPEIKLALVLPFE   81 (177)
T ss_dssp             -EEEEEE--GGGGT--SS--HHHHHHHHHHHHHHHHHHTTT--EEEE---TTHHHHHHHHHHTTTTT-TT-EEEEEESSB
T ss_pred             eEEEEEecChhhcCCCCCCchhHHHHHHHHHHHHHHHHHCCCCEEEECCcccHHHHHHHHHHHHHhhhhheEEEEEEccc
Confidence            56777776654            22445555555555556667999999999864  44555677888865 56777731


Q ss_pred             --ccCCChhHHHHHHHhhhHh---cCCCCCCCChHHHHhhhhHHHHhhhceeeeEeeeCchH-HHHHHHHHhhc----cC
Q 028143          136 --LKKQPPESQELLAKVKTVI---EKPHNDHLPLIEASRLCNMDIISHVQQVICFAFHDSRL-LMETCQEAKNL----RK  205 (213)
Q Consensus       136 --L~kQp~EsrelLe~V~~lv---E~penD~LpL~eAS~lCN~eIisr~qQlIcFAFHDS~t-Ll~tc~eAe~~----~K  205 (213)
                        =++=+++.|+.+.+++.-.   ..-.+..---+..-+-.|+-++.+++.+|++=--+.+- ---+++.|+..    +.
T Consensus        82 ~q~~~W~~~~q~~y~~il~~aD~v~~vs~~~Y~~~~~~~~rn~fMvdhsd~~iavyD~~~~G~t~~~~~~a~~~~~~~~y  161 (177)
T PF06908_consen   82 NQGNNWNEANQERYQSILEQADFVVVVSERPYYSPGQLQKRNRFMVDHSDGLIAVYDGEPEGGTKYTVRAAKKYQEQKGY  161 (177)
T ss_dssp             -TTTTS-HHHHHHHHHHHHH-SEEEESSSSB---HHHHHHHHHHHHHHSSEEEEE--TTT--TTHHHHHHHHHHHHHH--
T ss_pred             chhhcCCHHHHHHHHHHHHhCCEEEEccCCCCCCHHHHHHHhHHHHhCCCeEEEEEeCCCCCcchHHHHHHHHHhhccCC
Confidence              1233568898888885432   22222222235667789999999999999987666531 12233444443    34


Q ss_pred             eeEEeec
Q 028143          206 IVTLFYL  212 (213)
Q Consensus       206 vVTLfy~  212 (213)
                      .+.++-+
T Consensus       162 ~i~~I~~  168 (177)
T PF06908_consen  162 PIDLIDP  168 (177)
T ss_dssp             -EEEE-H
T ss_pred             eEEEecH
Confidence            5555444

; PDB: 2NX2_A.

>TIGR00730 conserved hypothetical protein, DprA/Smf-related, family 2

Probab=93.71  E-value=0.2  Score=41.51  Aligned_cols=65  Identities=17%  Similarity=0.114  Sum_probs=50.5

Q ss_pred             ceEEEecccccchh--HHHHHHHHHHHHHHhcCceeecCC-CCchHHHHHhhhhhcCCCceeEeeccccc
Q 028143           71 RAIGFFGTRNMGFM--HQELIEILSYALVITKNHIYTSGA-SGTNAAVIRGALRAERPDLLTVILPQSLK  137 (213)
Q Consensus        71 rria~lGsRhv~~~--hq~LIEllsyAlvl~gn~i~TSGA-~GtNaAvIRGalrae~p~lLTViLPQSL~  137 (213)
                      |+||++|+-..+.-  +.+..+-+.+.|+..|+.++|-|+ .|.=-|+-|||+++. - ...=|+|..|.
T Consensus         1 ~~i~V~~~s~~~~~~~~~~~A~~lG~~la~~g~~lV~GGg~~GlM~a~a~ga~~~g-G-~viGi~p~~l~   68 (178)
T TIGR00730         1 KTVCVYCGSSPGGNAAYKELAAELGAYLAGQGWGLVYGGGRVGLMGAIADAAMENG-G-TAVGVNPSGLF   68 (178)
T ss_pred             CEEEEECcCCCCCCcHHHHHHHHHHHHHHHCCCEEEECCChHhHHHHHHHHHHhcC-C-eEEEecchhhh
Confidence            58999988665333  445677788999999999999997 899999999998872 2 23347888774

This model represents one branch of a subfamily of proteins of unknown function. Both PSI-BLAST and weak hits by this model show a low level of similarity to and suggest an evolutionary relationship of the subfamily to the DprA/Smf family of DNA-processing proteins involved in chromosomal transformation with foreign DNA. Both Aquifex aeolicus and Mycobacterium leprae have one member in each of two branches of this subfamily, suggesting that the branches may have distinct functions.

>PRK13660 hypothetical protein; Provisional

Probab=92.02  E-value=5.7  Score=33.73  Aligned_cols=139  Identities=20%  Similarity=0.172  Sum_probs=87.6

Q ss_pred             ceEEEecccccch------------hHHHHHHHHHHHHHHhcCceeecCCCCch--HHHHHhhhhhcCCCc-eeEeeccc
Q 028143           71 RAIGFFGTRNMGF------------MHQELIEILSYALVITKNHIYTSGASGTN--AAVIRGALRAERPDL-LTVILPQS  135 (213)
Q Consensus        71 rria~lGsRhv~~------------~hq~LIEllsyAlvl~gn~i~TSGA~GtN--aAvIRGalrae~p~l-LTViLPQS  135 (213)
                      ++++|-|-|..++            +-..|-+-|..++-.+=-+++||||-|+-  ||=+--.|+.+-|++ |-+++|=.
T Consensus         2 k~~~~TGyR~~el~~f~~~dp~~~~IK~aL~~~l~~~~e~G~~wfi~ggalG~d~wAaEvvl~LK~~yp~lkL~~~~PF~   81 (182)
T PRK13660          2 KRLLVTGYKSFELGIFKDKDPKIKYIKKAIKRKLIALLEEGLEWVIISGQLGVELWAAEVVLELKEEYPDLKLAVITPFE   81 (182)
T ss_pred             eEEEEeccCcccCCCccccChhhHHHHHHHHHHHHHHHHCCCCEEEECCcchHHHHHHHHHHHHHhhCCCeEEEEEeCcc
Confidence            6788888888877            33333334444444455689999999986  455566678877886 66677732


Q ss_pred             c--cCCChhHHHHHHHhhhHh---cCCCCCCCChHHHHhhhhHHHHhhhceeeeEeeeCchH---HHHHHHHHhhc----
Q 028143          136 L--KKQPPESQELLAKVKTVI---EKPHNDHLPLIEASRLCNMDIISHVQQVICFAFHDSRL---LMETCQEAKNL----  203 (213)
Q Consensus       136 L--~kQp~EsrelLe~V~~lv---E~penD~LpL~eAS~lCN~eIisr~qQlIcFAFHDS~t---Ll~tc~eAe~~----  203 (213)
                      =  ++=+++.|+.+..+++-+   ..-....-.=+.--+.=|+-+|.+++-+|+|  -|.+.   .--+.+.|+..    
T Consensus        82 ~q~~~W~e~~q~~y~~i~~~aD~v~~vs~~~y~~p~q~~~rn~fmv~~sd~~i~~--YD~e~~Ggt~y~~~~A~k~~~~~  159 (182)
T PRK13660         82 EHGENWNEANQEKLANILKQADFVKSISKRPYESPAQFRQYNQFMLEHTDGALLV--YDEENEGSPKYFYEAAKKKQEKE  159 (182)
T ss_pred             chhhcCCHHHHHHHHHHHHhCCEEEEecCCCCCChHHHHHHHHHHHHccCeEEEE--EcCCCCCChHHHHHHHHHhhhcc
Confidence            1  233678888888775532   1111111101333455699999999998875  45332   44677888877    


Q ss_pred             cCeeEEee
Q 028143          204 RKIVTLFY  211 (213)
Q Consensus       204 ~KvVTLfy  211 (213)
                      +.-|.++=
T Consensus       160 ~y~i~~I~  167 (182)
T PRK13660        160 DYPLDLIT  167 (182)
T ss_pred             CceEEEeC
Confidence            77666553

>COG1611 Predicted Rossmann fold nucleotide-binding protein [General function prediction only]

Probab=87.16  E-value=2.4  Score=36.05  Aligned_cols=71  Identities=34%  Similarity=0.320  Sum_probs=54.7

Q ss_pred             hcCCceEEEe-cccc--cchhHHHHHHHHHHHHHHhcCceeecCCCCchHHHHHhhhhhcCCCceeEeecccccCC
Q 028143           67 QQGPRAIGFF-GTRN--MGFMHQELIEILSYALVITKNHIYTSGASGTNAAVIRGALRAERPDLLTVILPQSLKKQ  139 (213)
Q Consensus        67 q~g~rria~l-GsRh--v~~~hq~LIEllsyAlvl~gn~i~TSGA~GtNaAvIRGalrae~p~lLTViLPQSL~kQ  139 (213)
                      +.+.++|+++ ||.+  .+--..++-.=+.++++.-|+-++|-|..|+=.|+-|||+++  -...+=|+|.++..|
T Consensus        11 ~~~~~~i~V~~gs~~~~~~~~~~~~a~~lg~~la~~g~~V~tGG~~GiMea~~~gA~~~--gg~~vGi~p~~~~~~   84 (205)
T COG1611          11 FIGIRQIVVICGSARGIEPEEYYELARELGRELAKRGLLVITGGGPGVMEAVARGALEA--GGLVVGILPGLLHEQ   84 (205)
T ss_pred             ccCcceEEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEeCCchhhhhHHHHHHHHc--CCeEEEecCCCchhh
Confidence            4566777765 5554  444356777778999999999999999999999999999965  344555788887766

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	213
3maj_A	382	DNA processing chain A; MCSG, PSI-2, structural ge	97.94
2iz6_A	176	Molybdenum cofactor carrier protein; metal transpo	97.57
2nx2_A	181	Hypothetical protein YPSA; structural genomics, un	97.42
3uqz_A	288	DNA processing protein DPRA; SAM and rossmann fold	97.38
2a33_A	215	Hypothetical protein; structural genomics, protein	97.26
1rcu_A	195	Conserved hypothetical protein VT76; structural ge	97.23
3qua_A	199	Putative uncharacterized protein; structural genom	97.23
1weh_A	171	Conserved hypothetical protein TT1887; rossman fol	97.2
1t35_A	191	Hypothetical protein YVDD, putative lysine decarbo	97.19
1wek_A	217	Hypothetical protein TT1465; rossman fold, structu	97.12
1ydh_A	216	AT5G11950; structural genomics, protein structure	96.64
3sbx_A	189	Putative uncharacterized protein; structural genom	96.63
3gh1_A	462	Predicted nucleotide-binding protein; structural g	93.95
3bq9_A	460	Predicted rossmann fold nucleotide-binding domain	93.23

>3maj_A DNA processing chain A; MCSG, PSI-2, structural genomics, protein structure initiati midwest center for structural genomics; HET: DNA; 2.05A {Rhodopseudomonas palustris}

Probab=97.94  E-value=0.00014  Score=65.64  Aligned_cols=133  Identities=21%  Similarity=0.161  Sum_probs=104.5

Q ss_pred             CceEEEecccccchhHHHHHHHHHHHHHHhcCceeecCCCCchHHHHHhhhhhcCCCceeEeecccccCC-ChhHHHHHH
Q 028143           70 PRAIGFFGTRNMGFMHQELIEILSYALVITKNHIYTSGASGTNAAVIRGALRAERPDLLTVILPQSLKKQ-PPESQELLA  148 (213)
Q Consensus        70 ~rria~lGsRhv~~~hq~LIEllsyAlvl~gn~i~TSGA~GtNaAvIRGalrae~p~lLTViLPQSL~kQ-p~EsrelLe  148 (213)
                      .+.|||.|||++.---.+..+-+++.|+..|-.|++-+|-|+-+|+-||||.+ .   --.||+-.+++- |++.+++.+
T Consensus       127 ~~~vAIVGsR~~s~yG~~~a~~l~~~La~~g~~VVSGlA~GID~~AH~~AL~~-g---TIaVLg~Gld~~YP~~n~~L~~  202 (382)
T 3maj_A          127 RPMIAIVGSRNASGAGLKFAGQLAADLGAAGFVVISGLARGIDQAAHRASLSS-G---TVAVLAGGHDKIYPAEHEDLLL  202 (382)
T ss_dssp             SCEEEEECCSSCCHHHHHHHHHHHHHHHHHTCEEEECCCTTHHHHHHHHHTTT-C---EEEECSSCTTSCSSGGGHHHHH
T ss_pred             CceEEEEeCCCCCHHHHHHHHHHHHHHHHCCcEEEeCCccCHHHHHHHHHHhC-C---eEEEECCCcCccCCHhhHHHHH
Confidence            56899999999999999999999999999988888778999999999999997 3   445899999985 889999999


Q ss_pred             Hhhh-----HhcCCCCCCCChHHHHhhhhHHHHhhhceeeeE-eeeCchHHHHHHHHHhhccCeeE
Q 028143          149 KVKT-----VIEKPHNDHLPLIEASRLCNMDIISHVQQVICF-AFHDSRLLMETCQEAKNLRKIVT  208 (213)
Q Consensus       149 ~V~~-----lvE~penD~LpL~eAS~lCN~eIisr~qQlIcF-AFHDS~tLl~tc~eAe~~~KvVT  208 (213)
                      ++..     +=|-|-+.. |...---.-|+=|..-++=+|.. |-..|-+ |-|++.|-+++|-|-
T Consensus       203 ~I~~~~G~liSE~ppg~~-p~~~~Fp~RNRiIagLS~~vvVvEA~~kSGs-liTA~~Ale~gR~Vf  266 (382)
T 3maj_A          203 DIIQTRGAAISEMPLGHV-PRGKDFPRRNRLISGASVGVAVIEAAYRSGS-LITARRAADQGREVF  266 (382)
T ss_dssp             HHHHTTCEEEECSCTTCC-CCTTHHHHHHHHHHHHCSCEEECCCCTTCTH-HHHHHHHHHHTCCEE
T ss_pred             HHHHhCCcEEecCCCCCC-CCccccHHHHHHHHHhCCceEEEecCCCCcH-HHHHHHHHHhCCcEE
Confidence            9843     235454432 33332335677777778877765 4556777 568999999998774

>2iz6_A Molybdenum cofactor carrier protein; metal transport; 1.60A {Chlamydomonas reinhardtii} PDB: 2iz5_A 2iz7_A

Probab=97.57  E-value=0.00021  Score=57.65  Aligned_cols=123  Identities=15%  Similarity=0.106  Sum_probs=81.5

Q ss_pred             CCceEEEecccc--cchhHHHHHHHHHHHHHHhcCceeecCC-CCchHHHHHhhhhhcCCCceeEeecccccCCChhHHH
Q 028143           69 GPRAIGFFGTRN--MGFMHQELIEILSYALVITKNHIYTSGA-SGTNAAVIRGALRAERPDLLTVILPQSLKKQPPESQE  145 (213)
Q Consensus        69 g~rria~lGsRh--v~~~hq~LIEllsyAlvl~gn~i~TSGA-~GtNaAvIRGalrae~p~lLTViLPQSL~kQp~Esre  145 (213)
                      ..++||++|||+  ..=-..+..+-+.+.|+..|..|+|-|+ .|.=.|+-|||+.+ .-.- .=|||+. +++.+..- 
T Consensus        12 ~~~~VaV~Gs~~~g~~~~~~~~A~~lg~~La~~g~~lVsGGg~~Gim~aa~~gAl~~-gG~t-igVlP~~-~~~~~~~~-   87 (176)
T 2iz6_A           12 RKPIIGVMGPGKADTAENQLVMANELGKQIATHGWILLTGGRSLGVMHEAMKGAKEA-GGTT-IGVLPGP-DTSEISDA-   87 (176)
T ss_dssp             CCCEEEEECCCGGGCCHHHHHHHHHHHHHHHHTTCEEEEECSSSSHHHHHHHHHHHT-TCCE-EEEECC------CCTT-
T ss_pred             CCCeEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEECCCccCHhHHHHHHHHHc-CCEE-EEEeCch-hhhhhccC-
Confidence            457899999999  6666788999999999999999999999 99999999999998 4333 3357876 33222110 


Q ss_pred             HHHHhhhHhcCCCCCCCChHHHHhhhhHHHHhhhceeeeEeeeCchHHHHHHHHHhhccCeeEEe
Q 028143          146 LLAKVKTVIEKPHNDHLPLIEASRLCNMDIISHVQQVICFAFHDSRLLMETCQEAKNLRKIVTLF  210 (213)
Q Consensus       146 lLe~V~~lvE~penD~LpL~eAS~lCN~eIisr~qQlIcFAFHDS~tLl~tc~eAe~~~KvVTLf  210 (213)
                          +..++   .-++++      -=|+-|+..+|=+|.+-= -+-||-|.. +|-.++|-|-++
T Consensus        88 ----~~~~i---~~~~~~------~Rk~~m~~~sda~IvlpG-g~GTL~E~~-~al~~~kpV~~l  137 (176)
T 2iz6_A           88 ----VDIPI---VTGLGS------ARDNINALSSNVLVAVGM-GPGTAAEVA-LALKAKKPVVLL  137 (176)
T ss_dssp             ----CSEEE---ECCCCS------SSCCCCGGGCSEEEEESC-CHHHHHHHH-HHHHTTCCEEEE
T ss_pred             ----CceeE---EcCCHH------HHHHHHHHhCCEEEEecC-CccHHHHHH-HHHHhCCcEEEE
Confidence                00000   011121      125667777887787753 366765554 555777777654

>2nx2_A Hypothetical protein YPSA; structural genomics, unknown function, PSI, protein structure initiative; 2.00A {Bacillus subtilis} SCOP: c.129.1.2

Probab=97.42  E-value=0.0024  Score=51.26  Aligned_cols=140  Identities=14%  Similarity=0.067  Sum_probs=89.2

Q ss_pred             ceEEEecccccch------------hHHHHHHHHHHHHHHhc-CceeecCCCCchHHHHHhhhhh--cCC-CceeEeecc
Q 028143           71 RAIGFFGTRNMGF------------MHQELIEILSYALVITK-NHIYTSGASGTNAAVIRGALRA--ERP-DLLTVILPQ  134 (213)
Q Consensus        71 rria~lGsRhv~~------------~hq~LIEllsyAlvl~g-n~i~TSGA~GtNaAvIRGalra--e~p-~lLTViLPQ  134 (213)
                      ++|||-|-|..++            +-..|-+.|...+ -.| -+++|+||.|+=..+..-|+..  +-| =.|+|++|=
T Consensus         3 ~~i~vTGhR~~~l~if~~~~~~~~~ik~~L~~~l~~l~-~~G~~~~isgga~G~D~~aae~vl~lk~~y~~i~L~~v~Pf   81 (181)
T 2nx2_A            3 KVLAITGYKPFELGIFKQDDKALYYIKKAIKNRLIAFL-DEGLEWILISGQLGVELWAAEAAYDLQEEYPDLKVAVITPF   81 (181)
T ss_dssp             CEEEEEECCHHHHTCCSSCCHHHHHHHHHHHHHHHHHH-TTTCCEEEECCCTTHHHHHHHHHHTTTTTCTTCEEEEEESS
T ss_pred             eEEEEEeCCCccccCccccchHHHHHHHHHHHHHHHHH-hCCCcEEEECCCccHHHHHHHHHHHhccccCCceEEEEecc
Confidence            6999999999874            2333333333333 245 6999999999999998888773  346 468999993


Q ss_pred             ccc--CCChhHHHHHHHhhhHhc----CCCCCCCChHHHHhhhhHHHHhhhceeeeEee-eCchHHHHHHHHHhhc----
Q 028143          135 SLK--KQPPESQELLAKVKTVIE----KPHNDHLPLIEASRLCNMDIISHVQQVICFAF-HDSRLLMETCQEAKNL----  203 (213)
Q Consensus       135 SL~--kQp~EsrelLe~V~~lvE----~penD~LpL~eAS~lCN~eIisr~qQlIcFAF-HDS~tLl~tc~eAe~~----  203 (213)
                      .=-  +=+++.|+.+..++.-..    -++. +..=+.+-+.=|+-++.+||-+|+|-- +-+----.+.+.|+++    
T Consensus        82 ~~~~~~w~~~~~~~y~~ll~~aD~v~~l~~~-~y~~~~~~~~rn~~mvd~sD~liavyDg~~~GgT~~~v~~A~~~~~~~  160 (181)
T 2nx2_A           82 YEQEKNWKEPNKEQYEAVLAQADYEASLTHR-PYESPLQFKQKNQFFIDKSDGLLLLYDPEKEGSPKYMLGTAEKRREQD  160 (181)
T ss_dssp             BCTTTTSCHHHHHHHHHHHHHCSEEEESSSS-BCCCHHHHHHHHHHHHHHSSEEEEECCTTTCCTTHHHHHHHHHHHHHH
T ss_pred             cchhhCCCHHHHHHHHHHHHhCCeEEecccC-CCCCHHHHHHHHHHHHHHCCEEEEEEcCCCCCCHHHHHHHHHHhcccc
Confidence            322  236788887776655422    2222 111245666779999999999998853 1111233444555554    


Q ss_pred             cCeeEEeec
Q 028143          204 RKIVTLFYL  212 (213)
Q Consensus       204 ~KvVTLfy~  212 (213)
                      ++-|.++-+
T Consensus       161 ~~pv~~I~~  169 (181)
T 2nx2_A          161 GYPIYFITM  169 (181)
T ss_dssp             CCCEEEECH
T ss_pred             CCeEEEEcH
Confidence            577777654

>3uqz_A DNA processing protein DPRA; SAM and rossmann fold, DNA processing protein A, DNA binding; HET: DNA SO4; 2.70A {Streptococcus pneumoniae}

Probab=97.38  E-value=0.0031  Score=55.10  Aligned_cols=133  Identities=21%  Similarity=0.180  Sum_probs=97.4

Q ss_pred             CceEEEecccccchhHHHHHHHHHHHHHHhcCceeecC-CCCchHHHHHhhhhhcCCCceeEeecccccC-CChhHHHHH
Q 028143           70 PRAIGFFGTRNMGFMHQELIEILSYALVITKNHIYTSG-ASGTNAAVIRGALRAERPDLLTVILPQSLKK-QPPESQELL  147 (213)
Q Consensus        70 ~rria~lGsRhv~~~hq~LIEllsyAlvl~gn~i~TSG-A~GtNaAvIRGalrae~p~lLTViLPQSL~k-Qp~EsrelL  147 (213)
                      .+.|||.|||+..---.+..+-++..|+ .| ..++|| |-|+-+++-||||.+..+  --.||+..|++ -|++.+++.
T Consensus       106 ~~~vaIVGsR~~s~yg~~~a~~l~~~La-~~-~~VVSGlA~GID~~AH~~aL~~~g~--TIaVl~~Gld~~YP~~n~~L~  181 (288)
T 3uqz_A          106 FPKVAVVGSRACSKQGAKSVEKVIQGLE-NE-LVIVSGLAKGIDTAAHMAALQNGGK--TIAVIGTGLDVFYPKANKRLQ  181 (288)
T ss_dssp             SCEEEEEECTTCCHHHHHHHHHHHHTTT-TC-SEEEECCCTTHHHHHHHHHHHHTCC--EEEECSSCTTCCSSGGGHHHH
T ss_pred             CCcEEEEcCCCCCHHHHHHHHHHHHHHh-hh-heEecCcccCHHHHHHHHHHhcCCC--EEEEecccccccCchhhHHHH
Confidence            4689999999999999999999999885 44 667777 689999999999998433  23479999987 477888887


Q ss_pred             HHhhh----HhcCCCCCCCChHHHHhhhhHHHHhhhceeeeE-eeeCchHHHHHHHHHhhccCeeE
Q 028143          148 AKVKT----VIEKPHNDHLPLIEASRLCNMDIISHVQQVICF-AFHDSRLLMETCQEAKNLRKIVT  208 (213)
Q Consensus       148 e~V~~----lvE~penD~LpL~eAS~lCN~eIisr~qQlIcF-AFHDS~tLl~tc~eAe~~~KvVT  208 (213)
                      +++.+    +=|-|-+.. |...---.=|+=|-.-++=+|-. |-..|-+| -|++.|-+++|-|-
T Consensus       182 ~~i~~~GlliSE~ppg~~-p~~~~Fp~RNRiIagLS~~~vVvEA~~~SGsl-iTA~~Ale~gR~Vf  245 (288)
T 3uqz_A          182 DYIGNDHLVLSEYGPGEQ-PLKFHFPARNRIIAGLCRGVIVAEAKMRSGSL-ITCERAMEEGRDVF  245 (288)
T ss_dssp             HHHHHHSEEEESSCTTCC-CCTTHHHHHHHHHHHHCSEEEEESCCTTCHHH-HHHHHHHHTTCEEE
T ss_pred             HHhcccCcEeeccCCCCC-ccccccHHHHHHHHHcCCeEEEEecCCCChHH-HHHHHHHHcCCeEE
Confidence            77654    345554432 33333333467677777776655 44556665 69999999999764

>2a33_A Hypothetical protein; structural genomics, protein structure initiative, center for eukaryotic structural genomics, CESG, AT2G37210; 1.95A {Arabidopsis thaliana} SCOP: c.129.1.1 PDB: 2q4o_A

Probab=97.26  E-value=0.00045  Score=57.09  Aligned_cols=114  Identities=20%  Similarity=0.161  Sum_probs=73.2

Q ss_pred             cCCceEEEe-cccccch-hHHHHHHHHHHHHHHhcCceeecCCC-CchHHHHHhhhhhcCCCceeEeecccccCCChhHH
Q 028143           68 QGPRAIGFF-GTRNMGF-MHQELIEILSYALVITKNHIYTSGAS-GTNAAVIRGALRAERPDLLTVILPQSLKKQPPESQ  144 (213)
Q Consensus        68 ~g~rria~l-GsRhv~~-~hq~LIEllsyAlvl~gn~i~TSGA~-GtNaAvIRGalrae~p~lLTViLPQSL~kQp~Esr  144 (213)
                      ..-++||++ |||+..= -..+..+-+.+.|+..|..|+|-||. |.=.|+-|||+.+. -.- .=|||..+...  |..
T Consensus        11 ~~m~~IaV~cGS~~~~~~~y~~~A~~lg~~LA~~G~~vVsGGg~~GiM~aa~~gAl~~G-G~t-iGVlP~~~~~~--e~~   86 (215)
T 2a33_A           11 SKFRRICVFCGSSQGKKSSYQDAAVDLGNELVSRNIDLVYGGGSIGLMGLVSQAVHDGG-RHV-IGIIPKTLMPR--ELT   86 (215)
T ss_dssp             CSCSEEEEECCSSCCSSHHHHHHHHHHHHHHHHTTCEEEECCCSSHHHHHHHHHHHHTT-CCE-EEEEESSCC-------
T ss_pred             CCCCeEEEEECCCCCCchHHHHHHHHHHHHHHHCCCEEEECCChhhHhHHHHHHHHHcC-CcE-EEEcchHhcch--hhc
Confidence            345679999 9999643 35778899999999999999999996 99999999999983 333 33479887541  110


Q ss_pred             HHHHHhhhHhcCCCCCCCChHHHHhhhhHHHHhhhceeeeEeeeCchHHHHHH
Q 028143          145 ELLAKVKTVIEKPHNDHLPLIEASRLCNMDIISHVQQVICFAFHDSRLLMETC  197 (213)
Q Consensus       145 elLe~V~~lvE~penD~LpL~eAS~lCN~eIisr~qQlIcFAFHDS~tLl~tc  197 (213)
                         .+  .+.+.|.-+++      .-=|.-|+..+|=+|++-= -.=||-|-.
T Consensus        87 ---~~--~~~~~~~~~~f------~~Rk~~~~~~sda~VvlpG-G~GTLdElf  127 (215)
T 2a33_A           87 ---GE--TVGEVRAVADM------HQRKAEMAKHSDAFIALPG-GYGTLEELL  127 (215)
T ss_dssp             --------CCEEEEESSH------HHHHHHHHHTCSEEEECSC-CHHHHHHHH
T ss_pred             ---cC--CCCceeecCCH------HHHHHHHHHhCCEEEEeCC-CCchHHHHH
Confidence               00  01122222222      1236667778887777642 244554444

>1rcu_A Conserved hypothetical protein VT76; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.50A {Thermotoga maritima} SCOP: c.129.1.1

Probab=97.23  E-value=0.0021  Score=52.67  Aligned_cols=119  Identities=16%  Similarity=0.172  Sum_probs=82.9

Q ss_pred             CceEEEeccccc-ch----hHHHHHHHHHHHHHHhcCceeecCCCCchHHHHHhhhhhcCCCceeEeecccccCCChhHH
Q 028143           70 PRAIGFFGTRNM-GF----MHQELIEILSYALVITKNHIYTSGASGTNAAVIRGALRAERPDLLTVILPQSLKKQPPESQ  144 (213)
Q Consensus        70 ~rria~lGsRhv-~~----~hq~LIEllsyAlvl~gn~i~TSGA~GtNaAvIRGalrae~p~lLTViLPQSL~kQp~Esr  144 (213)
                      .++||++|+|+. .=    -..+..+-+.+.|+..|..|+|-|+.|.=.|+-|||+.+ .-. ..-|||.  ++.+    
T Consensus        23 m~~IaV~Gss~~~~~~~~~~~~~~A~~lg~~LA~~G~~vVsGg~~GiM~aa~~gAl~~-GG~-~iGVlP~--e~~~----   94 (195)
T 1rcu_A           23 MKKVVVVGYSGPVNKSPVSELRDICLELGRTLAKKGYLVFNGGRDGVMELVSQGVREA-GGT-VVGILPD--EEAG----   94 (195)
T ss_dssp             CCEEEEEECCSCTTSTTTGGGHHHHHHHHHHHHHTTCEEEECCSSHHHHHHHHHHHHT-TCC-EEEEEST--TCCC----
T ss_pred             CCeEEEEecCCCCCccccHHHHHHHHHHHHHHHHCCCEEEeCCHHHHHHHHHHHHHHc-CCc-EEEEeCC--cccC----
Confidence            468999999875 22    566888999999999999999999999999999999998 333 3445787  2111    


Q ss_pred             HHHHHhhhHhcCCCCCCCChH--HHHhhhhHHHHhhhceeeeEeeeCchHHHHHHHHHhhccCeeEEe
Q 028143          145 ELLAKVKTVIEKPHNDHLPLI--EASRLCNMDIISHVQQVICFAFHDSRLLMETCQEAKNLRKIVTLF  210 (213)
Q Consensus       145 elLe~V~~lvE~penD~LpL~--eAS~lCN~eIisr~qQlIcFAFHDS~tLl~tc~eAe~~~KvVTLf  210 (213)
                                 ++. .++++.  .--..=|.-|+..+|=+|.+-= -+-||-|.. +|-.++|-|-++
T Consensus        95 -----------~~~-~~~~~~~~~~f~~Rk~~m~~~sda~IvlpG-G~GTL~E~~-eal~~~kPV~ll  148 (195)
T 1rcu_A           95 -----------NPY-LSVAVKTGLDFQMRSFVLLRNADVVVSIGG-EIGTAIEIL-GAYALGKPVILL  148 (195)
T ss_dssp             -----------CTT-CSEEEECCCCHHHHHHHHHTTCSEEEEESC-CHHHHHHHH-HHHHTTCCEEEE
T ss_pred             -----------CCC-cceeeecCCCHHHHHHHHHHhCCEEEEecC-CCcHHHHHH-HHHhcCCCEEEE
Confidence                       111 233322  1111237888899998888863 367766554 555577777766

>3qua_A Putative uncharacterized protein; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 2.10A {Mycobacterium smegmatis str}

Probab=97.23  E-value=0.001  Score=54.84  Aligned_cols=68  Identities=13%  Similarity=0.131  Sum_probs=56.2

Q ss_pred             cCCceEEEe-cccccchhHHHHHHHHHHHHHHhcCceeecCCC-CchHHHHHhhhhhcCCCceeEeeccccc
Q 028143           68 QGPRAIGFF-GTRNMGFMHQELIEILSYALVITKNHIYTSGAS-GTNAAVIRGALRAERPDLLTVILPQSLK  137 (213)
Q Consensus        68 ~g~rria~l-GsRhv~~~hq~LIEllsyAlvl~gn~i~TSGA~-GtNaAvIRGalrae~p~lLTViLPQSL~  137 (213)
                      .+.++||++ |||...--+.+..+-+.+.|+..|..|+|-|+. |.=.|+-|||+++.  -...-|+|+.|.
T Consensus        20 ~~~~~v~Vfggs~~~~~~~~~~A~~lg~~La~~g~~lV~GGG~~GlM~a~~~gA~~~G--G~viGv~p~~l~   89 (199)
T 3qua_A           20 DRQWAVCVYCASGPTHPELLELAAEVGSSIAARGWTLVSGGGNVSAMGAVAQAARAKG--GHTVGVIPKALV   89 (199)
T ss_dssp             -CCCEEEEECCSSCCCHHHHHHHHHHHHHHHHTTCEEEECCBCSHHHHHHHHHHHHTT--CCEEEEEEGGGT
T ss_pred             CCCCEEEEEECCCCCCHHHHHHHHHHHHHHHHCCCEEEECCCccCHHHHHHHHHHHcC--CcEEEEeCchhh
Confidence            567899999 578666677788899999999999999999986 99999999999883  344557898874

>1weh_A Conserved hypothetical protein TT1887; rossman fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; 1.80A {Thermus thermophilus} SCOP: c.129.1.1

Probab=97.20  E-value=0.00055  Score=54.23  Aligned_cols=63  Identities=13%  Similarity=0.037  Sum_probs=53.6

Q ss_pred             ceEEEecccccch--hHHHHHHHHHHHHHHhcCceeecCCCCchHHHHHhhhhhcCCCceeEeeccc
Q 028143           71 RAIGFFGTRNMGF--MHQELIEILSYALVITKNHIYTSGASGTNAAVIRGALRAERPDLLTVILPQS  135 (213)
Q Consensus        71 rria~lGsRhv~~--~hq~LIEllsyAlvl~gn~i~TSGA~GtNaAvIRGalrae~p~lLTViLPQS  135 (213)
                      |+||++|||+.+-  -+.+..+-+.+.|+..|..|+|=|+.|.=.|+-|||+.+.. . ..=|+|..
T Consensus         2 ~~V~V~gs~~~~~~~~~~~~A~~lg~~La~~g~~lV~Ggg~GiM~aa~~gAl~~gG-~-tiGV~~~~   66 (171)
T 1weh_A            2 RLLAVFVSSRLSPEDPLYARWVRYGEVLAEEGFGLACGGYQGGMEALARGVKAKGG-L-VVGVTAPA   66 (171)
T ss_dssp             EEEEEECCSSCCTTSHHHHHHHHHHHHHHHTTEEEEECCSSTHHHHHHHHHHHTTC-C-EEECCCGG
T ss_pred             CEEEEEeCCCCCCCcHHHHHHHHHHHHHHHCCCEEEeCChhhHHHHHHHHHHHcCC-c-EEEEeccc
Confidence            5799999999987  67889999999999999999999999999999999999833 2 33345653

>1t35_A Hypothetical protein YVDD, putative lysine decarboxylase; structural genomics target, NYSGXRC, PSI, protein structure initiative; 2.72A {Bacillus subtilis} SCOP: c.129.1.1

Probab=97.19  E-value=0.00096  Score=53.80  Aligned_cols=114  Identities=11%  Similarity=0.065  Sum_probs=75.2

Q ss_pred             ceEEEecccccc--hhHHHHHHHHHHHHHHhcCceeecCCC-CchHHHHHhhhhhcCCCceeEeecccccCCChhHHHHH
Q 028143           71 RAIGFFGTRNMG--FMHQELIEILSYALVITKNHIYTSGAS-GTNAAVIRGALRAERPDLLTVILPQSLKKQPPESQELL  147 (213)
Q Consensus        71 rria~lGsRhv~--~~hq~LIEllsyAlvl~gn~i~TSGA~-GtNaAvIRGalrae~p~lLTViLPQSL~kQp~EsrelL  147 (213)
                      |+||++|||+.+  =-+.+..+-+.+.|+..|..|+|-||. |.=.|+-|||+.+. - ...=|+|..|...     +  
T Consensus         2 ~~V~V~gss~~~~~~~~~~~A~~lg~~La~~g~~lV~GGg~~GiM~aa~~gA~~~g-G-~~iGv~p~~l~~~-----e--   72 (191)
T 1t35_A            2 KTICVFAGSNPGGNEAYKRKAAELGVYMAEQGIGLVYGGSRVGLMGTIADAIMENG-G-TAIGVMPSGLFSG-----E--   72 (191)
T ss_dssp             CEEEEECCSSCCSSTHHHHHHHHHHHHHHHTTCEEEECCCCSHHHHHHHHHHHTTT-C-CEEEEEETTCCHH-----H--
T ss_pred             CEEEEEECCCCCCChHHHHHHHHHHHHHHHCCCEEEECCCcccHHHHHHHHHHHcC-C-eEEEEeCchhccc-----c--
Confidence            679999999974  456778899999999999999999997 99999999999983 2 3444678887621     1  


Q ss_pred             HHhhhHhcCCCCCCCChHHHHhhhhHHHHhhhceeeeEeeeCchHHHHHHHHH
Q 028143          148 AKVKTVIEKPHNDHLPLIEASRLCNMDIISHVQQVICFAFHDSRLLMETCQEA  200 (213)
Q Consensus       148 e~V~~lvE~penD~LpL~eAS~lCN~eIisr~qQlIcFAFHDS~tLl~tc~eA  200 (213)
                            ..++.-+.+....--..=|.-++..+|=+|++-= -.=||-|-.+..
T Consensus        73 ------~~~~~~~~~~~~~~~~~Rk~~~~~~sda~IvlPG-G~GTl~El~e~l  118 (191)
T 1t35_A           73 ------VVHQNLTELIEVNGMHERKAKMSELADGFISMPG-GFGTYEELFEVL  118 (191)
T ss_dssp             ------HTTCCCSEEEEESHHHHHHHHHHHHCSEEEECSC-CHHHHHHHHHHH
T ss_pred             ------cccCCCCccccCCCHHHHHHHHHHHCCEEEEeCC-CccHHHHHHHHH
Confidence                  0111111111111111226677778887776642 245655555444

>1wek_A Hypothetical protein TT1465; rossman fold, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; 2.20A {Thermus thermophilus} SCOP: c.129.1.1

Probab=97.12  E-value=0.0015  Score=54.12  Aligned_cols=117  Identities=19%  Similarity=0.106  Sum_probs=78.0

Q ss_pred             HHhcCCceEEEecccccch--hHHHHHHHHHHHHHHhcCceeecCCCCchHHHHHhhhhhcCCCceeEeecccccCCChh
Q 028143           65 IQQQGPRAIGFFGTRNMGF--MHQELIEILSYALVITKNHIYTSGASGTNAAVIRGALRAERPDLLTVILPQSLKKQPPE  142 (213)
Q Consensus        65 IQq~g~rria~lGsRhv~~--~hq~LIEllsyAlvl~gn~i~TSGA~GtNaAvIRGalrae~p~lLTViLPQSL~kQp~E  142 (213)
                      +..-|.+.||++|||+.+-  -+.+..+-+.+.|+..|..|+|-||.|.=.|+-|||+.+ .-.-.-|+ |. +   |.+
T Consensus        32 l~~~~~~~VaV~Gss~~~~~~~~~~~A~~lg~~La~~g~~lVsGGg~GiM~aa~~gAl~~-gG~~iGV~-~~-~---P~~  105 (217)
T 1wek_A           32 LSELQVPLVSVFGSARFGEGHPAYEAGYRLGRALAEAGFGVVTGGGPGVMEAVNRGAYEA-GGVSVGLN-IE-L---PHE  105 (217)
T ss_dssp             HHHCCSCEEEEECCSSCCTTSHHHHHHHHHHHHHHHHTCEEEECSCSHHHHHHHHHHHHT-TCCEEEEE-EC-C---TTC
T ss_pred             HhhcCCCEEEEEeCCCCCCCcHHHHHHHHHHHHHHHCCCEEEeCChhhHHHHHHHHHHHc-CCCEEEEe-eC-C---cch
Confidence            4455546899999999986  567899999999999999999999999999999999998 33333332 32 1   221


Q ss_pred             HHHHHHHhhhHhcCCCCCCCChH---HHHhhhhHHHHhhhceeeeEeeeCchHHHHHHHHHh
Q 028143          143 SQELLAKVKTVIEKPHNDHLPLI---EASRLCNMDIISHVQQVICFAFHDSRLLMETCQEAK  201 (213)
Q Consensus       143 srelLe~V~~lvE~penD~LpL~---eAS~lCN~eIisr~qQlIcFAFHDS~tLl~tc~eAe  201 (213)
                                   ...|..++..   .--.-=|.-++..+|=+|.+- =-+-||-|......
T Consensus       106 -------------~~~~~~~t~~~~~~~f~~Rk~~m~~~sda~Ivlp-GG~GTL~El~e~lt  153 (217)
T 1wek_A          106 -------------QKPNPYQTHALSLRYFFVRKVLFVRYAVGFVFLP-GGFGTLDELSEVLV  153 (217)
T ss_dssp             -------------CCCCSCCSEEEEESCHHHHHHHHHHTEEEEEECS-CCHHHHHHHHHHHH
T ss_pred             -------------hhccccCCcCcccCCHHHHHHHHHHhCCEEEEeC-CCCcHHHHHHHHHH
Confidence                         1122222211   001122666778888777765 34566666554443

>1ydh_A AT5G11950; structural genomics, protein structure initiative, center for eukaryotic structural genomics, CESG; 2.15A {Arabidopsis thaliana} SCOP: c.129.1.1 PDB: 2q4d_A

Probab=96.64  E-value=0.0049  Score=51.07  Aligned_cols=124  Identities=18%  Similarity=0.156  Sum_probs=77.2

Q ss_pred             CCceEEEe-cccccc-hhHHHHHHHHHHHHHHhcCceeecCCC-CchHHHHHhhhhhcCCCceeEeecccccCCChhHHH
Q 028143           69 GPRAIGFF-GTRNMG-FMHQELIEILSYALVITKNHIYTSGAS-GTNAAVIRGALRAERPDLLTVILPQSLKKQPPESQE  145 (213)
Q Consensus        69 g~rria~l-GsRhv~-~~hq~LIEllsyAlvl~gn~i~TSGA~-GtNaAvIRGalrae~p~lLTViLPQSL~kQp~Esre  145 (213)
                      .-++||++ |||..+ =-+.+.-+-+.+.|+..|..|+|-|+. |.=.|+-|||+.+..  ...=|+|..+..       
T Consensus         8 ~m~~V~V~ggsr~~~~~~~~~~A~~lg~~LA~~g~~lV~GGg~~GlM~aa~~gA~~~GG--~~iGv~p~~l~~-------   78 (216)
T 1ydh_A            8 RFRKICVFCGSHSGHREVFSDAAIELGNELVKRKIDLVYGGGSVGLMGLISRRVYEGGL--HVLGIIPKALMP-------   78 (216)
T ss_dssp             SCSEEEEECCSCCCSSHHHHHHHHHHHHHHHHTTCEEEECCCSSHHHHHHHHHHHHTTC--CEEEEEEGGGHH-------
T ss_pred             CCCeEEEEeCCCCCCCcHHHHHHHHHHHHHHHCCCEEEECCCcccHhHHHHHHHHHcCC--cEEEEechhcCc-------
Confidence            34679999 678753 456778888999999999999999997 999999999999833  344456765421       


Q ss_pred             HHHHhhhHhcCCCCCC--CChHHHHhhhhHHHHhhhceeeeEeeeCchHHHHHHHHH-----hhccCeeEEe
Q 028143          146 LLAKVKTVIEKPHNDH--LPLIEASRLCNMDIISHVQQVICFAFHDSRLLMETCQEA-----KNLRKIVTLF  210 (213)
Q Consensus       146 lLe~V~~lvE~penD~--LpL~eAS~lCN~eIisr~qQlIcFAFHDS~tLl~tc~eA-----e~~~KvVTLf  210 (213)
                              .|.+.|..  ++...--..=|.-++.++|=+|+|-= -.=||-|-.+..     ...+|-|-|+
T Consensus        79 --------~e~~~~~~~~~~~~~~~~~Rk~~~~~~sda~I~lpG-G~GTLdElfE~lt~~qlg~~~kPvvll  141 (216)
T 1ydh_A           79 --------IEISGETVGDVRVVADMHERKAAMAQEAEAFIALPG-GYGTMEELLEMITWSQLGIHKKTVGLL  141 (216)
T ss_dssp             --------HHCCSSCCSEEEEESSHHHHHHHHHHHCSEEEECSC-SHHHHHHHHHHHHHHHHTSCCCEEEEE
T ss_pred             --------cccccCCCCcccccCCHHHHHHHHHHhCCEEEEeCC-CccHHHHHHHHHHHHHhcccCCCEEEe
Confidence                    12233321  11111012336677788887777642 134444433221     1245555554

>3sbx_A Putative uncharacterized protein; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: AMP; 2.50A {Mycobacterium marinum M}

Probab=96.63  E-value=0.007  Score=49.49  Aligned_cols=69  Identities=14%  Similarity=0.106  Sum_probs=53.3

Q ss_pred             hcCCceEEEecc-cccchhHHHHHHHHHHHHHHhcCceeecCCC-CchHHHHHhhhhhcCCCceeEeeccccc
Q 028143           67 QQGPRAIGFFGT-RNMGFMHQELIEILSYALVITKNHIYTSGAS-GTNAAVIRGALRAERPDLLTVILPQSLK  137 (213)
Q Consensus        67 q~g~rria~lGs-Rhv~~~hq~LIEllsyAlvl~gn~i~TSGA~-GtNaAvIRGalrae~p~lLTViLPQSL~  137 (213)
                      ..|.++||++|+ |...=-+.+.-+-+.+.|+..|+.|+|-|+. |.=.||-|||+.+. - ...=|+|+.|.
T Consensus        10 ~~~~~~I~Vfg~s~~~~~~~~~~A~~lg~~la~~g~~lv~GGG~~GlM~a~~~ga~~~G-G-~viGv~p~~l~   80 (189)
T 3sbx_A           10 EPGRWTVAVYCAAAPTHPELLELAGAVGAAIAARGWTLVWGGGHVSAMGAVSSAARAHG-G-WTVGVIPKMLV   80 (189)
T ss_dssp             ---CCEEEEECCSSCCCHHHHHHHHHHHHHHHHTTCEEEECCBCSHHHHHHHHHHHTTT-C-CEEEEEETTTT
T ss_pred             CCCCeEEEEEEeCCCCChHHHHHHHHHHHHHHHCCCEEEECCCccCHHHHHHHHHHHcC-C-cEEEEcCchhh
Confidence            467799999985 5344455678888999999999999999987 99999999999883 2 34456788774

>3gh1_A Predicted nucleotide-binding protein; structural genomics, protein structure initiative; 1.90A {Vibrio cholerae o1 biovar el tor str} PDB: 2pmb_A

Probab=93.95  E-value=0.18  Score=47.19  Aligned_cols=69  Identities=14%  Similarity=0.202  Sum_probs=55.4

Q ss_pred             hcCCceEEEecccccchhHHHHHHHHHHHHHHhcCceeecCCCCchHHHHHhhhhhc------CCCceeEeecccc
Q 028143           67 QQGPRAIGFFGTRNMGFMHQELIEILSYALVITKNHIYTSGASGTNAAVIRGALRAE------RPDLLTVILPQSL  136 (213)
Q Consensus        67 q~g~rria~lGsRhv~~~hq~LIEllsyAlvl~gn~i~TSGA~GtNaAvIRGalrae------~p~lLTViLPQSL  136 (213)
                      ...++.+.++||....=-+-+.-+-+.++|+..|..|+|-|+.|.=-|+.|||..+.      .-..+- |+|+.|
T Consensus       144 ~r~~~IvV~cGSs~~~p~yye~A~eLGr~LA~~G~~LVtGGG~GLMeAa~aGA~~a~a~qr~aGG~vIG-IiP~~L  218 (462)
T 3gh1_A          144 GATPNLVVCWGGHSINEVEYQYTREVGHELGLRELNICTGCGPGAMEGPMKGAAVGHAKQRYSEYRYLG-LTEPSI  218 (462)
T ss_dssp             TCCSCEEEEECCSSCCHHHHHHHHHHHHHHHHTTCEEEECCSSGGGTHHHHHHHHHHHHTTCTTCCEEE-EECTTT
T ss_pred             CCCCCEEEEECCCCCCHHHHHHHHHHHHHHHHCCCEEEeCCcHHHHHHHHHHHHHhccccccCCCeEEE-Eccchh
Confidence            356666679999887778888899999999999999999999999999999998873      233344 456664

>3bq9_A Predicted rossmann fold nucleotide-binding domain containing protein; structural genomics, PSI-2, protein structure initiative; 1.80A {Idiomarina baltica}

Probab=93.23  E-value=0.32  Score=45.44  Aligned_cols=69  Identities=14%  Similarity=0.240  Sum_probs=52.4

Q ss_pred             cCCceEEEecccccchhHHHHHHHHHHHHHHhcCceeecCCCCchHHHHHhhhhh------cCCCceeEeeccccc
Q 028143           68 QGPRAIGFFGTRNMGFMHQELIEILSYALVITKNHIYTSGASGTNAAVIRGALRA------ERPDLLTVILPQSLK  137 (213)
Q Consensus        68 ~g~rria~lGsRhv~~~hq~LIEllsyAlvl~gn~i~TSGA~GtNaAvIRGalra------e~p~lLTViLPQSL~  137 (213)
                      ..++.++|+||....=-.-+..+-+.+.|+..|..|+|-|+.|.=-|+++||..+      ..-..+= |+|+.|.
T Consensus       143 ~~~~ivVv~GSs~~~~~~Ye~A~eLGr~LA~~G~~LVtGGG~GlMEaa~aGA~~a~s~qr~~GG~vIG-IiP~~L~  217 (460)
T 3bq9_A          143 EEPNMVVCWGGHSINEIEYKYTKDVGYHIGLRGLNICTGCGPGAMKGPMKGATIGHAKQRVEGGRYLG-LTEPGII  217 (460)
T ss_dssp             CCSCEEEEECCSSCCHHHHHHHHHHHHHHHHTTCEEEECCSSGGGTHHHHHHHHHHHHTTCSSCCEEE-EECTTTT
T ss_pred             CCCCEEEEEcCCCCCCHHHHHHHHHHHHHHHCCCEEEeCCcHHHhhHHHhhHHhhcccccCCCCEEEE-EeChhhh
Confidence            4456788999977654445788889999999999999999999998889999877      2333333 4576653

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	213
d1weha_	171	Hypothetical protein TT1887 (TTHA0294) {Thermus th	97.13
d2nx2a1	177	Hypothetical protein YpsA {Bacillus subtilis [TaxI	97.13
d2q4oa1	183	Hypothetical protein At2g37210/T2N18.3 {Thale cres	96.9
d1t35a_	179	Hypothetical protein YvdD {Bacillus subtilis [TaxI	96.82
d1ydhb_	181	Hypothetical protein At5g11950 {Thale cress (Arabi	96.65
d1rcua_	170	Hypothetical protein TM1055 {Thermotoga maritima [	96.62
d1weka_	208	Hypothetical protein TT1465 (TTHA1644) {Thermus th	96.53

>d1weha_ c.129.1.1 (A:) Hypothetical protein TT1887 (TTHA0294) {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: MCP/YpsA-like
superfamily: MCP/YpsA-like
family: MoCo carrier protein-like
domain: Hypothetical protein TT1887 (TTHA0294)
species: Thermus thermophilus [TaxId: 274]

Probab=97.13  E-value=0.00048  Score=53.15  Aligned_cols=66  Identities=15%  Similarity=0.077  Sum_probs=56.3

Q ss_pred             ceEEEecccccchh--HHHHHHHHHHHHHHhcCceeecCCCCchHHHHHhhhhhcCCCceeEeeccccc
Q 028143           71 RAIGFFGTRNMGFM--HQELIEILSYALVITKNHIYTSGASGTNAAVIRGALRAERPDLLTVILPQSLK  137 (213)
Q Consensus        71 rria~lGsRhv~~~--hq~LIEllsyAlvl~gn~i~TSGA~GtNaAvIRGalrae~p~lLTViLPQSL~  137 (213)
                      |.||+|||...+--  ..+..+-+.++|+..|+.++|-|+.|.=.|+-|||.++ .-...=|+.|+.+.
T Consensus         2 k~V~Vfgss~~~~~~~~~~~a~~lG~~la~~g~~lv~GGg~G~M~a~a~ga~~~-gG~~iGv~~~~~l~   69 (171)
T d1weha_           2 RLLAVFVSSRLSPEDPLYARWVRYGEVLAEEGFGLACGGYQGGMEALARGVKAK-GGLVVGVTAPAFFP   69 (171)
T ss_dssp             EEEEEECCSSCCTTSHHHHHHHHHHHHHHHTTEEEEECCSSTHHHHHHHHHHHT-TCCEEECCCGGGCT
T ss_pred             CEEEEEecCCCCCCCHHHHHHHHHHHHHHHCCCceeeCcchHHHHHHHHHHHhc-cCceeeeeeccccc
Confidence            67999999987654  33667779999999999999999999999999999999 66677777787765

>d2nx2a1 c.129.1.2 (A:1-177) Hypothetical protein YpsA {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: MCP/YpsA-like
superfamily: MCP/YpsA-like
family: YpsA-like
domain: Hypothetical protein YpsA
species: Bacillus subtilis [TaxId: 1423]

Probab=97.13  E-value=0.0028  Score=49.43  Aligned_cols=136  Identities=16%  Similarity=0.127  Sum_probs=87.1

Q ss_pred             ceEEEecccccc------------hhHHHHHHHHHHHHHHhcCceeecCCCCchHHHHHhhhh--hcCCC-ceeEeec--
Q 028143           71 RAIGFFGTRNMG------------FMHQELIEILSYALVITKNHIYTSGASGTNAAVIRGALR--AERPD-LLTVILP--  133 (213)
Q Consensus        71 rria~lGsRhv~------------~~hq~LIEllsyAlvl~gn~i~TSGA~GtNaAvIRGalr--ae~p~-lLTViLP--  133 (213)
                      |+|||-|-|...            ++-..|-+.+...+...=..++|+||-|+---+..-||.  .+-|+ .|.++||  
T Consensus         2 k~i~vTGhR~~elg~f~~~~p~~~~Ik~~l~~~l~~l~e~G~~~~i~g~alG~D~~aAevvl~lk~~yp~ikL~~~lPf~   81 (177)
T d2nx2a1           2 KVLAITGYKPFELGIFKQDDKALYYIKKAIKNRLIAFLDEGLEWILISGQLGVELWAAEAAYDLQEEYPDLKVAVITPFY   81 (177)
T ss_dssp             CEEEEEECCHHHHTCCSSCCHHHHHHHHHHHHHHHHHHTTTCCEEEECCCTTHHHHHHHHHHTTTTTCTTCEEEEEESSB
T ss_pred             cEEEEecCCCcccCCCCCCCchHHHHHHHHHHHHHHHHHcCCCEEEEcCcccHHHHHHHHHHHHhhhCCCceEEEEeccc
Confidence            688898988432            333455555555555566788999999998766666655  44566 4889999  


Q ss_pred             -ccccCCChhHHHHHHHhhhHh-------cCCCCCCCChHHHHhhhhHHHHhhhceeeeEe-eeCchHHHHHHHHHhh--
Q 028143          134 -QSLKKQPPESQELLAKVKTVI-------EKPHNDHLPLIEASRLCNMDIISHVQQVICFA-FHDSRLLMETCQEAKN--  202 (213)
Q Consensus       134 -QSL~kQp~EsrelLe~V~~lv-------E~penD~LpL~eAS~lCN~eIisr~qQlIcFA-FHDS~tLl~tc~eAe~--  202 (213)
                       |+ ++-+++.|+.+.+++.-.       +.|-.+    +.+-+-=|+-++.+||-+|.+= =+.+----.+.+.|++  
T Consensus        82 ~~~-~~w~e~~~~~y~~ll~~aD~v~~vs~~~y~~----~~q~~~rn~~mvd~sd~liavyD~e~~Ggt~~~v~~A~k~~  156 (177)
T d2nx2a1          82 EQE-KNWKEPNKEQYEAVLAQADYEASLTHRPYES----PLQFKQKNQFFIDKSDGLLLLYDPEKEGSPKYMLGTAEKRR  156 (177)
T ss_dssp             CTT-TTSCHHHHHHHHHHHHHCSEEEESSSSBCCC----HHHHHHHHHHHHHHSSEEEEECCTTTCCTTHHHHHHHHHHH
T ss_pred             ccc-cCCCHHHHHHHHHHHhhCCEEEEeccCCCCC----HHHHHHHHHHHHHhcCeEEEEEeCCCCCCHHHHHHHHHHHH
Confidence             87 688999999888866532       233222    3444556999999999988631 1222112334444444  


Q ss_pred             --ccCeeEEee
Q 028143          203 --LRKIVTLFY  211 (213)
Q Consensus       203 --~~KvVTLfy  211 (213)
                        .++-|.++=
T Consensus       157 ~~~~~~i~~I~  167 (177)
T d2nx2a1         157 EQDGYPIYFIT  167 (177)
T ss_dssp             HHHCCCEEEEC
T ss_pred             hccCCcEEEEc
Confidence              355555543

>d2q4oa1 c.129.1.1 (A:8-190) Hypothetical protein At2g37210/T2N18.3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: MCP/YpsA-like
superfamily: MCP/YpsA-like
family: MoCo carrier protein-like
domain: Hypothetical protein At2g37210/T2N18.3
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=96.90  E-value=0.0011  Score=51.06  Aligned_cols=68  Identities=22%  Similarity=0.188  Sum_probs=52.8

Q ss_pred             cCCceEEEecccccchh--HHHHHHHHHHHHHHhcCceeecCCC-CchHHHHHhhhhhcCCCceeEeeccccc
Q 028143           68 QGPRAIGFFGTRNMGFM--HQELIEILSYALVITKNHIYTSGAS-GTNAAVIRGALRAERPDLLTVILPQSLK  137 (213)
Q Consensus        68 ~g~rria~lGsRhv~~~--hq~LIEllsyAlvl~gn~i~TSGA~-GtNaAvIRGalrae~p~lLTViLPQSL~  137 (213)
                      .--|+||+||+-..+--  +.+..+-|++.|+..|+.|+|.|+. |.=.|+-+||..+ . ....-|.|..+.
T Consensus         4 ~~~k~v~Vf~gs~~~~~~~~~~~a~~lg~~la~~g~~lV~GGG~~GlMga~a~ga~~~-g-g~v~Gi~~~~l~   74 (183)
T d2q4oa1           4 SKFRRICVFCGSSQGKKSSYQDAAVDLGNELVSRNIDLVYGGGSIGLMGLVSQAVHDG-G-RHVIGIIPKTLM   74 (183)
T ss_dssp             CSCSEEEEECCSSCCSSHHHHHHHHHHHHHHHHTTCEEEECCCSSHHHHHHHHHHHHT-T-CCEEEEEETTCC
T ss_pred             cCCceEEEECcCCCCcCCHHHHHHHHHHHHHHHcCCeEEECCCCcchHHHHHHHHHhc-C-Cccccccccccc
Confidence            34589999986555443  4677788999999999999999986 9999999999987 4 445556666654

>d1t35a_ c.129.1.1 (A:) Hypothetical protein YvdD {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: MCP/YpsA-like
superfamily: MCP/YpsA-like
family: MoCo carrier protein-like
domain: Hypothetical protein YvdD
species: Bacillus subtilis [TaxId: 1423]

Probab=96.82  E-value=0.0007  Score=51.85  Aligned_cols=65  Identities=14%  Similarity=0.131  Sum_probs=50.8

Q ss_pred             ceEEEecccccchh--HHHHHHHHHHHHHHhcCceeecCC-CCchHHHHHhhhhhcCCCceeEeeccccc
Q 028143           71 RAIGFFGTRNMGFM--HQELIEILSYALVITKNHIYTSGA-SGTNAAVIRGALRAERPDLLTVILPQSLK  137 (213)
Q Consensus        71 rria~lGsRhv~~~--hq~LIEllsyAlvl~gn~i~TSGA-~GtNaAvIRGalrae~p~lLTViLPQSL~  137 (213)
                      |+||+||+-..+.-  +.+..+-|++.|+..|+.++|.|+ .|.=.|+-|||..+ .-. .+-+.|..|.
T Consensus         2 k~v~VF~~s~~~~~~~~~~~a~~lg~~la~~g~~lv~GGG~~GlMga~a~ga~~~-gg~-v~gv~~~~l~   69 (179)
T d1t35a_           2 KTICVFAGSNPGGNEAYKRKAAELGVYMAEQGIGLVYGGSRVGLMGTIADAIMEN-GGT-AIGVMPSGLF   69 (179)
T ss_dssp             CEEEEECCSSCCSSTHHHHHHHHHHHHHHHTTCEEEECCCCSHHHHHHHHHHHTT-TCC-EEEEEETTCC
T ss_pred             CEEEEEccCCCCcCCHHHHHHHHHHHHHHHCCCeEEECCCchHHHHHHhcchhhc-CCc-eeccccchhh
Confidence            78999986554443  468888999999999999999997 49999999999987 443 4445666553

>d1ydhb_ c.129.1.1 (B:) Hypothetical protein At5g11950 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: MCP/YpsA-like
superfamily: MCP/YpsA-like
family: MoCo carrier protein-like
domain: Hypothetical protein At5g11950
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=96.65  E-value=0.0015  Score=50.23  Aligned_cols=65  Identities=23%  Similarity=0.301  Sum_probs=49.9

Q ss_pred             CceEEEecccccch--hHHHHHHHHHHHHHHhcCceeecCCC-CchHHHHHhhhhhcCCCceeEeecccc
Q 028143           70 PRAIGFFGTRNMGF--MHQELIEILSYALVITKNHIYTSGAS-GTNAAVIRGALRAERPDLLTVILPQSL  136 (213)
Q Consensus        70 ~rria~lGsRhv~~--~hq~LIEllsyAlvl~gn~i~TSGA~-GtNaAvIRGalrae~p~lLTViLPQSL  136 (213)
                      -|+||+||+-+.+-  -+.+..+-|++.|+..|+.++|.|+. |.=.|+-|||..+ .-..+=| .|+.|
T Consensus         2 ~k~v~Vf~gs~~~~~~~~~~~a~~lg~~La~~g~~lv~GGG~~GlMga~a~ga~~~-gg~viGv-~~~~l   69 (181)
T d1ydhb_           2 FRKICVFCGSHSGHREVFSDAAIELGNELVKRKIDLVYGGGSVGLMGLISRRVYEG-GLHVLGI-IPKAL   69 (181)
T ss_dssp             CSEEEEECCSCCCSSTHHHHHHHHHHHHHHHTTCEEEECCCSSHHHHHHHHHHHHT-TCCEEEE-EEGGG
T ss_pred             CcEEEEEccCCCCcCCHHHHHHHHHHHHHHHCCCeEEECCCchHHHHHHHHhHhhc-CCccccc-chhhh
Confidence            38999998655543  33567778899999999999999876 9999999999998 5444444 45443

>d1rcua_ c.129.1.1 (A:) Hypothetical protein TM1055 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: MCP/YpsA-like
superfamily: MCP/YpsA-like
family: MoCo carrier protein-like
domain: Hypothetical protein TM1055
species: Thermotoga maritima [TaxId: 2336]

Probab=96.62  E-value=0.0034  Score=47.67  Aligned_cols=114  Identities=19%  Similarity=0.226  Sum_probs=79.7

Q ss_pred             ceEEEecc----cccch-hHHHHHHHHHHHHHHhcCceeecCCCCchHHHHHhhhhhcCCCceeEeecccccCCChhHHH
Q 028143           71 RAIGFFGT----RNMGF-MHQELIEILSYALVITKNHIYTSGASGTNAAVIRGALRAERPDLLTVILPQSLKKQPPESQE  145 (213)
Q Consensus        71 rria~lGs----Rhv~~-~hq~LIEllsyAlvl~gn~i~TSGA~GtNaAvIRGalrae~p~lLTViLPQSL~kQp~Esre  145 (213)
                      |||+++|+    ..-|. =..++-+-|.+.|+..|+.+||-|..|.=.|+-|||..+ .-..+- |||..          
T Consensus         2 k~v~v~~~~~~~~~~p~~~~~~~a~~lG~~la~~g~~V~~GG~~GlM~ava~ga~~~-gg~viG-ilP~~----------   69 (170)
T d1rcua_           2 KKVVVVGYSGPVNKSPVSELRDICLELGRTLAKKGYLVFNGGRDGVMELVSQGVREA-GGTVVG-ILPDE----------   69 (170)
T ss_dssp             CEEEEEECCSCTTSTTTGGGHHHHHHHHHHHHHTTCEEEECCSSHHHHHHHHHHHHT-TCCEEE-EESTT----------
T ss_pred             ceEEEEEEecCCCCCcchHHHHHHHHHHHHHHHCCCEEECCCccCHHHHHHHHHHhc-CCcccc-ccchh----------
Confidence            78888876    23333 478888889999999999999999999999999999998 444444 57842          


Q ss_pred             HHHHhhhHhcCCCCCCC------ChHHHHhhhhHHHHhhhceeeeEeeeCchHHHHHHHHHhhccCeeEEe
Q 028143          146 LLAKVKTVIEKPHNDHL------PLIEASRLCNMDIISHVQQVICFAFHDSRLLMETCQEAKNLRKIVTLF  210 (213)
Q Consensus       146 lLe~V~~lvE~penD~L------pL~eAS~lCN~eIisr~qQlIcFAFHDS~tLl~tc~eAe~~~KvVTLf  210 (213)
                                .+.|+.+      ....+.|  +..++..+|=+|++. ==.=||-|-+ +|-.++|.|-++
T Consensus        70 ----------~~~n~~~~~~i~~~~~~~~R--k~~m~~~sda~I~lP-GG~GTl~El~-~a~~l~KPiill  126 (170)
T d1rcua_          70 ----------EAGNPYLSVAVKTGLDFQMR--SFVLLRNADVVVSIG-GEIGTAIEIL-GAYALGKPVILL  126 (170)
T ss_dssp             ----------CCCCTTCSEEEECCCCHHHH--HHHHHTTCSEEEEES-CCHHHHHHHH-HHHHTTCCEEEE
T ss_pred             ----------hccCcccceeEEeccchhhh--HHHHhhcccceeeec-cccchHHHHH-HHHHhCCceEEe
Confidence                      1223222      1234445  667788899888765 2356666655 566777777665

>d1weka_ c.129.1.1 (A:) Hypothetical protein TT1465 (TTHA1644) {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: MCP/YpsA-like
superfamily: MCP/YpsA-like
family: MoCo carrier protein-like
domain: Hypothetical protein TT1465 (TTHA1644)
species: Thermus thermophilus [TaxId: 274]

Probab=96.53  E-value=0.006  Score=48.12  Aligned_cols=77  Identities=25%  Similarity=0.205  Sum_probs=59.5

Q ss_pred             HHHHhcCCceEEEecccccchhH--HHHHHHHHHHHHHhcCceeecCCCCchHHHHHhhhhhcCCCceeEeecccccCCC
Q 028143           63 LAIQQQGPRAIGFFGTRNMGFMH--QELIEILSYALVITKNHIYTSGASGTNAAVIRGALRAERPDLLTVILPQSLKKQP  140 (213)
Q Consensus        63 aaIQq~g~rria~lGsRhv~~~h--q~LIEllsyAlvl~gn~i~TSGA~GtNaAvIRGalrae~p~lLTViLPQSL~kQp  140 (213)
                      .++-..+.+.||+|||...+--+  .+..+-|.+.|+..|+.|+|-|+.|.=-||-|||+.+ .-... =|.|..+..++
T Consensus        26 ~~~~~~~~~~V~Vfgsa~~~~~~~~y~~A~~LG~~La~~g~~lv~GGg~GlMgava~ga~~~-gG~vi-Gi~~~~~~~~~  103 (208)
T d1weka_          26 ETLSELQVPLVSVFGSARFGEGHPAYEAGYRLGRALAEAGFGVVTGGGPGVMEAVNRGAYEA-GGVSV-GLNIELPHEQK  103 (208)
T ss_dssp             HHHHHCCSCEEEEECCSSCCTTSHHHHHHHHHHHHHHHHTCEEEECSCSHHHHHHHHHHHHT-TCCEE-EEEECCTTCCC
T ss_pred             HHHhhcCCCeEEEECCCCCCCcChHHHHHHHHHHHHHhCcceEEeCCCchHHHHHHhhhhhc-CCcee-ccccccccccc
Confidence            34666678899999999875432  3567789999999999999999999999999999999 44333 35566666554


Q ss_pred             h
Q 028143          141 P  141 (213)
Q Consensus       141 ~  141 (213)
                      +
T Consensus       104 ~  104 (208)
T d1weka_         104 P  104 (208)
T ss_dssp             C
T ss_pred             c
Confidence            3