Citrus Sinensis ID: 028152

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210---
MQLKLVPNNSAGTVTAYYLKSPGASWDEIDFEFLGNLSGNPYIVHTNVYTQGKGDREQQFYLWFDLTADFHTYSILWNPGHIVFYIDGRPIREFKNLESFGIPYPKKQSMRMYASLWNADDWATRGGLAKTDWSQAPFTASFRNFNAKACVWSIGISSCSLNPTTKNTWFSQELDSSSQRKLKWVQQNYMVYNYCTDTSRFPQGLPQECTNKN
cEEEEEccccccEEEEEEEEcccccccEEEEEEEcccccccEEEEEEEEEccccccEEEEEEccccccccEEEEEEEcccEEEEEEccEEEEEEEccccccccccccccEEEEEEEEccccccccccEEEEccccccEEEEEEEEEEEEEEEcccccccccccccccccccccccHHHHHHHHHHHHccEEEEEEcccccccccccccccccc
ccEEEEccccccEEEEEEEcccccccEEEEEEEEHccccccEEEEEEEEEccEccccEEEEccccHHHccEEEEEEEEccEEEEEEccccEEEEcccHHcccccccccccEEEEEccccccHHHccccEEcccccccEEEEEcccccccEEcccccccccccccccccHHHHcccHHHHHHHHHHHHccEEEEcccccccccccccHHHcccc
mqlklvpnnsagtVTAYYlkspgaswdeidfeflgnlsgnpyivhtnvytqgkgdreqqFYLWFDltadfhtysilwnpghivfyidgrpirefknlesfgipypkkqsMRMYASLWnaddwatrgglaktdwsqapftasfrnfNAKACVWSIgisscslnpttkntwfsqeldssSQRKLKWVQQNYMVYNyctdtsrfpqglpqectnkn
mqlklvpnnsagTVTAYYLKSPGASWDEIDFEFLGNLSGNPYIVHTNVYTQGKGDREQQFYLWFDLTADFHTYSILWNPGHIVFYIDGRPIREFKNLESFGIPYPKKQSMRMYASLWNADDWATRGGLAKTDWSQAPFTASFRNFNAKACVWSIGISSCSLNPTTKNTWFSQELDSSSQRKLKWVQQNYMVYNYCTDtsrfpqglpqectnkn
MQLKLVPNNSAGTVTAYYLKSPGASWDEIDFEFLGNLSGNPYIVHTNVYTQGKGDREQQFYLWFDLTADFHTYSILWNPGHIVFYIDGRPIREFKNLESFGIPYPKKQSMRMYASLWNADDWATRGGLAKTDWSQAPFTASFRNFNAKACVWSIGISSCSLNPTTKNTWFSQELDSSSQRKLKWVQQNYMVYNYCTDTSRFPQGLPQECTNKN
***********GTVTAYYLKSPGASWDEIDFEFLGNLSGNPYIVHTNVYTQGKGDREQQFYLWFDLTADFHTYSILWNPGHIVFYIDGRPIREFKNLESFGIPYPKKQSMRMYASLWNADDWATRGGLAKTDWSQAPFTASFRNFNAKACVWSIGISSCSLNPTTKNTWFSQE******RKLKWVQQNYMVYNYCTDTS**************
*QL*L**NNSAGTVTAYYLKSPGASWDEIDFEFLGNLSGNPYIVHTNVYTQGKGDREQQFYLWFDLTADFHTYSILWNPGHIVFYIDGRPIREFKNLESFGIPYPKKQSMRMYASLWNADDWATRGGLAKTDWSQAPFTASFRNFNAKACVWSIGIS******************SSSQRKLKWVQQNYMVYNYCTDTSRFPQGLPQE*****
MQLKLVPNNSAGTVTAYYLKSPGASWDEIDFEFLGNLSGNPYIVHTNVYTQGKGDREQQFYLWFDLTADFHTYSILWNPGHIVFYIDGRPIREFKNLESFGIPYPKKQSMRMYASLWNADDWATRGGLAKTDWSQAPFTASFRNFNAKACVWSIGISSCSLNPTTKNTWF*********RKLKWVQQNYMVYNYCTDTSRFPQGLPQECTNKN
*QLKLVPNNSAGTVTAYYLKSPGASWDEIDFEFLGNLSGNPYIVHTNVYTQGKGDREQQFYLWFDLTADFHTYSILWNPGHIVFYIDGRPIREFKNLESFGIPYPKKQSMRMYASLWNADDWATRGGLAKTDWSQAPFTASFRNFNAKACVWSIGI***********TWFSQELDSSSQRKLKWVQQNYMVYNYCTDTSRFPQGLPQEC****
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MQLKLVPNNSAGTVTAYYLKSPGASWDEIDFEFLGNLSGNPYIVHTNVYTQGKGDREQQFYLWFDLTADFHTYSILWNPGHIVFYIDGRPIREFKNLESFGIPYPKKQSMRMYASLWNADDWATRGGLAKTDWSQAPFTASFRNFNAKACVWSIGISSCSLNPTTKNTWFSQELDSSSQRKLKWVQQNYMVYNYCTDTSRFPQGLPQECTNKN
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query213 2.2.26 [Sep-21-2011]
Q38857284 Xyloglucan endotransgluco yes no 0.981 0.735 0.716 8e-92
Q38907284 Probable xyloglucan endot no no 0.967 0.725 0.727 9e-90
Q38910286 Probable xyloglucan endot no no 0.981 0.730 0.710 2e-89
Q9ZV40305 Probable xyloglucan endot no no 1.0 0.698 0.685 2e-88
Q9FI31282 Xyloglucan endotransgluco no no 0.967 0.730 0.671 2e-85
Q9M0D2282 Probable xyloglucan endot no no 0.967 0.730 0.661 5e-84
O80803282 Probable xyloglucan endot no no 0.967 0.730 0.657 6e-84
P24806269 Xyloglucan endotransgluco no no 0.920 0.728 0.661 6e-83
Q9M0D1277 Probable xyloglucan endot no no 0.967 0.743 0.652 2e-82
P35694283 Brassinosteroid-regulated no no 0.953 0.717 0.655 7e-78
>sp|Q38857|XTH22_ARATH Xyloglucan endotransglucosylase/hydrolase protein 22 OS=Arabidopsis thaliana GN=XTH22 PE=1 SV=1 Back     alignment and function desciption
 Score =  336 bits (861), Expect = 8e-92,   Method: Compositional matrix adjust.
 Identities = 152/212 (71%), Positives = 177/212 (83%), Gaps = 3/212 (1%)

Query: 1   MQLKLVPNNSAGTVTAYYLKSPGASWDEIDFEFLGNLSGNPYIVHTNVYTQGKGDREQQF 60
           MQ+KLVP NSAGTVT  YLKSPG +WDEIDFEFLGN SG PY +HTNVYTQGKGD+EQQF
Sbjct: 70  MQMKLVPGNSAGTVTTLYLKSPGTTWDEIDFEFLGNSSGEPYTLHTNVYTQGKGDKEQQF 129

Query: 61  YLWFDLTADFHTYSILWNPGHIVFYIDGRPIREFKNLESFGIPYPKKQSMRMYASLWNAD 120
            LWFD TA+FHTY+ILWNP  I+F +DG PIREFKN+ES G  +PK + MRMY+SLWNAD
Sbjct: 130 KLWFDPTANFHTYTILWNPQRIIFTVDGTPIREFKNMESLGTLFPKNKPMRMYSSLWNAD 189

Query: 121 DWATRGGLAKTDWSQAPFTASFRNFNAKACVWSIGISSC---SLNPTTKNTWFSQELDSS 177
           DWATRGGL KTDWS+APFTAS+R F  +ACVWS G SSC   S   TT  +W SQELDS+
Sbjct: 190 DWATRGGLVKTDWSKAPFTASYRGFQQEACVWSNGKSSCPNASKQGTTTGSWLSQELDST 249

Query: 178 SQRKLKWVQQNYMVYNYCTDTSRFPQGLPQEC 209
           +Q++++WVQ+NYM+YNYCTD  RFPQGLP+EC
Sbjct: 250 AQQRMRWVQRNYMIYNYCTDAKRFPQGLPKEC 281
Catalyzes xyloglucan endohydrolysis (XEH) and/or endotransglycosylation (XET). Cleaves and religates xyloglucan polymers, an essential constituent of the primary cell wall, and thereby participates in cell wall construction of growing tissues. Its induction in case of mechanical stress, suggests that it may contribute in the adaptive changes in morphogenesis by being recruited to alter tissues tensil strength, or flexibility, enabling adaptation to mechanically stresssul environments.
Arabidopsis thaliana (taxid: 3702)
EC: 2EC: .EC: 4EC: .EC: 1EC: .EC: 2EC: 0EC: 7
>sp|Q38907|XTH25_ARATH Probable xyloglucan endotransglucosylase/hydrolase protein 25 OS=Arabidopsis thaliana GN=XTH25 PE=2 SV=2 Back     alignment and function description
>sp|Q38910|XTH23_ARATH Probable xyloglucan endotransglucosylase/hydrolase protein 23 OS=Arabidopsis thaliana GN=XTH23 PE=2 SV=1 Back     alignment and function description
>sp|Q9ZV40|XTH21_ARATH Probable xyloglucan endotransglucosylase/hydrolase protein 21 OS=Arabidopsis thaliana GN=XTH21 PE=2 SV=1 Back     alignment and function description
>sp|Q9FI31|XTH20_ARATH Xyloglucan endotransglucosylase/hydrolase protein 20 OS=Arabidopsis thaliana GN=XTH20 PE=2 SV=1 Back     alignment and function description
>sp|Q9M0D2|XTH18_ARATH Probable xyloglucan endotransglucosylase/hydrolase protein 18 OS=Arabidopsis thaliana GN=XTH18 PE=2 SV=1 Back     alignment and function description
>sp|O80803|XTH17_ARATH Probable xyloglucan endotransglucosylase/hydrolase protein 17 OS=Arabidopsis thaliana GN=XTH17 PE=2 SV=1 Back     alignment and function description
>sp|P24806|XTH24_ARATH Xyloglucan endotransglucosylase/hydrolase protein 24 OS=Arabidopsis thaliana GN=XTH24 PE=1 SV=2 Back     alignment and function description
>sp|Q9M0D1|XTH19_ARATH Probable xyloglucan endotransglucosylase/hydrolase protein 19 OS=Arabidopsis thaliana GN=XTH19 PE=2 SV=1 Back     alignment and function description
>sp|P35694|BRU1_SOYBN Brassinosteroid-regulated protein BRU1 OS=Glycine max PE=2 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query213
224143768276 predicted protein [Populus trichocarpa] 0.971 0.75 0.794 1e-99
255570533295 Xyloglucan endotransglucosylase/hydrolas 1.0 0.722 0.769 2e-97
356547501293 PREDICTED: probable xyloglucan endotrans 0.995 0.723 0.769 1e-95
357479713283 Xyloglucan endotransglucosylase/hydrolas 0.981 0.738 0.765 2e-95
363807986291 uncharacterized protein LOC100800017 pre 0.985 0.721 0.777 7e-95
363806744287 uncharacterized protein LOC100785313 pre 0.990 0.735 0.748 2e-94
224142267286 predicted protein [Populus trichocarpa] 0.985 0.734 0.747 7e-94
357479711289 Xyloglucan endotransglucosylase/hydrolas 0.981 0.723 0.779 2e-93
449457143283 PREDICTED: probable xyloglucan endotrans 0.981 0.738 0.747 4e-93
449517329283 PREDICTED: probable xyloglucan endotrans 0.981 0.738 0.747 9e-93
>gi|224143768|ref|XP_002325068.1| predicted protein [Populus trichocarpa] gi|222866502|gb|EEF03633.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
 Score =  368 bits (944), Expect = 1e-99,   Method: Compositional matrix adjust.
 Identities = 166/209 (79%), Positives = 190/209 (90%), Gaps = 2/209 (0%)

Query: 1   MQLKLVPNNSAGTVTAYYLKSPGASWDEIDFEFLGNLSGNPYIVHTNVYTQGKGDREQQF 60
           +QLKLVP NSAGTVT +YL S G++WDEIDFEFLGNLSG+PY+VHTNVYTQGKGDREQQF
Sbjct: 65  IQLKLVPGNSAGTVTTFYLHSQGSAWDEIDFEFLGNLSGDPYLVHTNVYTQGKGDREQQF 124

Query: 61  YLWFDLTADFHTYSILWNPGHIVFYIDGRPIREFKNLESFGIPYPKKQSMRMYASLWNAD 120
           YLWFD TADFHTYS+LWNP HIVFY+DGRPIREFKN+ES G+PYPK+QSMRMYAS+WNAD
Sbjct: 125 YLWFDPTADFHTYSVLWNPRHIVFYVDGRPIREFKNMESIGVPYPKRQSMRMYASIWNAD 184

Query: 121 DWATRGGLAKTDWSQAPFTASFRNFNAKACVWSIGISSCSLNPTTKNTWFSQELDSSSQR 180
           DWATRGGL KTDW+QAPFT S+RNFNA+AC+ S G+SSC  N +T N W+SQELDS+SQ+
Sbjct: 185 DWATRGGLVKTDWTQAPFTVSYRNFNAEACMGSNGVSSC--NNSTNNRWYSQELDSTSQK 242

Query: 181 KLKWVQQNYMVYNYCTDTSRFPQGLPQEC 209
           +LKWV++NYMVYNYC DT RFPQGLP EC
Sbjct: 243 QLKWVRENYMVYNYCADTKRFPQGLPLEC 271

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|255570533|ref|XP_002526224.1| Xyloglucan endotransglucosylase/hydrolase protein 22 precursor, putative [Ricinus communis] gi|223534463|gb|EEF36165.1| Xyloglucan endotransglucosylase/hydrolase protein 22 precursor, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|356547501|ref|XP_003542150.1| PREDICTED: probable xyloglucan endotransglucosylase/hydrolase protein 23-like [Glycine max] Back     alignment and taxonomy information
>gi|357479713|ref|XP_003610142.1| Xyloglucan endotransglucosylase/hydrolase [Medicago truncatula] gi|355511197|gb|AES92339.1| Xyloglucan endotransglucosylase/hydrolase [Medicago truncatula] Back     alignment and taxonomy information
>gi|363807986|ref|NP_001241948.1| uncharacterized protein LOC100800017 precursor [Glycine max] gi|255639333|gb|ACU19964.1| unknown [Glycine max] Back     alignment and taxonomy information
>gi|363806744|ref|NP_001242530.1| uncharacterized protein LOC100785313 precursor [Glycine max] gi|255641964|gb|ACU21249.1| unknown [Glycine max] Back     alignment and taxonomy information
>gi|224142267|ref|XP_002324480.1| predicted protein [Populus trichocarpa] gi|222865914|gb|EEF03045.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|357479711|ref|XP_003610141.1| Xyloglucan endotransglucosylase/hydrolase [Medicago truncatula] gi|355511196|gb|AES92338.1| Xyloglucan endotransglucosylase/hydrolase [Medicago truncatula] Back     alignment and taxonomy information
>gi|449457143|ref|XP_004146308.1| PREDICTED: probable xyloglucan endotransglucosylase/hydrolase protein 23-like isoform 2 [Cucumis sativus] gi|29500891|emb|CAD87535.1| putative xyloglucan endotransglycosylase [Cucumis sativus] gi|29500899|emb|CAD87533.1| putative xyloglucan endotransglycosylase [Cucumis sativus] Back     alignment and taxonomy information
>gi|449517329|ref|XP_004165698.1| PREDICTED: probable xyloglucan endotransglucosylase/hydrolase protein 23-like isoform 2 [Cucumis sativus] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query213
TAIR|locus:2174497284 TCH4 "Touch 4" [Arabidopsis th 0.981 0.735 0.716 6e-87
TAIR|locus:2053967305 XTH21 "xyloglucan endotransglu 1.0 0.698 0.703 6.2e-85
TAIR|locus:2174597284 XTH25 "xyloglucan endotransglu 0.967 0.725 0.727 1e-84
TAIR|locus:2117567286 XTR6 "xyloglucan endotransglyc 0.981 0.730 0.710 1.3e-84
TAIR|locus:2162652282 XTH20 "xyloglucan endotransglu 0.967 0.730 0.671 2.8e-82
TAIR|locus:2118746282 XTH18 "xyloglucan endotransglu 0.967 0.730 0.661 1.4e-80
TAIR|locus:2206335282 XTH17 "xyloglucan endotransglu 0.967 0.730 0.657 1.8e-80
TAIR|locus:2118751277 XTH19 "xyloglucan endotransglu 0.967 0.743 0.652 5.4e-79
TAIR|locus:2128936269 XTH24 "xyloglucan endotransglu 0.934 0.739 0.671 2.3e-78
TAIR|locus:2174572285 XTH12 "xyloglucan endotransglu 0.995 0.743 0.615 8.4e-74
TAIR|locus:2174497 TCH4 "Touch 4" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 869 (311.0 bits), Expect = 6.0e-87, P = 6.0e-87
 Identities = 152/212 (71%), Positives = 177/212 (83%)

Query:     1 MQLKLVPNNSAGTVTAYYLKSPGASWDEIDFEFLGNLSGNPYIVHTNVYTQGKGDREQQF 60
             MQ+KLVP NSAGTVT  YLKSPG +WDEIDFEFLGN SG PY +HTNVYTQGKGD+EQQF
Sbjct:    70 MQMKLVPGNSAGTVTTLYLKSPGTTWDEIDFEFLGNSSGEPYTLHTNVYTQGKGDKEQQF 129

Query:    61 YLWFDLTADFHTYSILWNPGHIVFYIDGRPIREFKNLESFGIPYPKKQSMRMYASLWNAD 120
              LWFD TA+FHTY+ILWNP  I+F +DG PIREFKN+ES G  +PK + MRMY+SLWNAD
Sbjct:   130 KLWFDPTANFHTYTILWNPQRIIFTVDGTPIREFKNMESLGTLFPKNKPMRMYSSLWNAD 189

Query:   121 DWATRGGLAKTDWSQAPFTASFRNFNAKACVWSIGISSC---SLNPTTKNTWFSQELDSS 177
             DWATRGGL KTDWS+APFTAS+R F  +ACVWS G SSC   S   TT  +W SQELDS+
Sbjct:   190 DWATRGGLVKTDWSKAPFTASYRGFQQEACVWSNGKSSCPNASKQGTTTGSWLSQELDST 249

Query:   178 SQRKLKWVQQNYMVYNYCTDTSRFPQGLPQEC 209
             +Q++++WVQ+NYM+YNYCTD  RFPQGLP+EC
Sbjct:   250 AQQRMRWVQRNYMIYNYCTDAKRFPQGLPKEC 281
GO:0004553 "hydrolase activity, hydrolyzing O-glycosyl compounds" evidence=IEA
GO:0005618 "cell wall" evidence=IEA;IDA
GO:0005975 "carbohydrate metabolic process" evidence=IEA
GO:0006073 "cellular glucan metabolic process" evidence=IEA
GO:0009507 "chloroplast" evidence=ISM
GO:0016762 "xyloglucan:xyloglucosyl transferase activity" evidence=IEA;IDA
GO:0016798 "hydrolase activity, acting on glycosyl bonds" evidence=ISS
GO:0048046 "apoplast" evidence=IEA
GO:0009409 "response to cold" evidence=IEP
GO:0005794 "Golgi apparatus" evidence=IDA
GO:0009611 "response to wounding" evidence=RCA
GO:0009612 "response to mechanical stimulus" evidence=IEP;RCA
GO:0010200 "response to chitin" evidence=RCA
GO:0009408 "response to heat" evidence=IEP
GO:0009733 "response to auxin stimulus" evidence=IEP
GO:0009741 "response to brassinosteroid stimulus" evidence=IEP
GO:0009664 "plant-type cell wall organization" evidence=TAS
TAIR|locus:2053967 XTH21 "xyloglucan endotransglucosylase/hydrolase 21" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2174597 XTH25 "xyloglucan endotransglucosylase/hydrolase 25" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2117567 XTR6 "xyloglucan endotransglycosylase 6" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2162652 XTH20 "xyloglucan endotransglucosylase/hydrolase 20" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2118746 XTH18 "xyloglucan endotransglucosylase/hydrolase 18" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2206335 XTH17 "xyloglucan endotransglucosylase/hydrolase 17" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2118751 XTH19 "xyloglucan endotransglucosylase/hydrolase 19" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2128936 XTH24 "xyloglucan endotransglucosylase/hydrolase 24" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2174572 XTH12 "xyloglucan endotransglucosylase/hydrolase 12" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q38857XTH22_ARATH2, ., 4, ., 1, ., 2, 0, 70.71690.98120.7359yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

Prediction LevelEC numberConfidence of Prediction
3rd Layer2.4.1LOW CONFIDENCE prediction!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
gw1.XVIII.2839.1
hypothetical protein (259 aa)
(Populus trichocarpa)
Predicted Functional Partners:
 
Sorry, there are no predicted associations at the current settings.
 

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query213
cd02176263 cd02176, GH16_XET, Xyloglucan endotransglycosylase 1e-122
PLN03161291 PLN03161, PLN03161, Probable xyloglucan endotransg 1e-99
pfam00722174 pfam00722, Glyco_hydro_16, Glycosyl hydrolases fam 2e-58
cd02183203 cd02183, GH16_fungal_CRH1_transglycosylase, glycos 4e-23
cd00413210 cd00413, Glyco_hydrolase_16, glycosyl hydrolase fa 2e-20
pfam0695551 pfam06955, XET_C, Xyloglucan endo-transglycosylase 2e-20
cd02175212 cd02175, GH16_lichenase, lichenase, member of glyc 3e-20
COG2273355 COG2273, SKN1, Beta-glucanase/Beta-glucan syntheta 2e-10
cd08023235 cd08023, GH16_laminarinase_like, Laminarinase, mem 5e-10
cd02178258 cd02178, GH16_beta_agarase, Beta-agarase, member o 6e-04
cd08024330 cd08024, GH16_CCF, Coelomic cytolytic factor, memb 0.001
>gnl|CDD|185685 cd02176, GH16_XET, Xyloglucan endotransglycosylase, member of glycosyl hydrolase family 16 Back     alignment and domain information 
 Score =  346 bits (889), Expect = e-122
 Identities = 119/212 (56%), Positives = 147/212 (69%), Gaps = 4/212 (1%)

Query: 1   MQLKLVPNNSAGTVTAYYLKSPGASW-DEIDFEFLGNLSGNPYIVHTNVYTQGKGDREQQ 59
           M++KL P +SAGTVTA+YL S G    DEIDFEFLGN++G PY + TNV+  G G REQ+
Sbjct: 53  MRIKLPPGDSAGTVTAFYLSSQGPDNHDEIDFEFLGNVTGQPYTLQTNVFANGVGGREQR 112

Query: 60  FYLWFDLTADFHTYSILWNPGHIVFYIDGRPIREFKNLESFGIPYPKKQSMRMYASLWNA 119
            YLWFD TADFHTYSILWNP  IVFY+D  PIR FKN E+ G+PYP  Q M +YAS+W+ 
Sbjct: 113 IYLWFDPTADFHTYSILWNPHQIVFYVDDVPIRVFKNNEALGVPYPSSQPMGVYASIWDG 172

Query: 120 DDWATRGGLAKTDWSQAPFTASFRNFNAKACVWSIGISSCSLNPTTK--NTWFSQELDSS 177
            DWAT+GG  K DWS APF AS+R+F    CV   G S  S + T    N    Q+L ++
Sbjct: 173 SDWATQGGRVKIDWSYAPFVASYRDFKLDGCVVDPGDSFSSCSCTEDWWNGSTYQQLSAN 232

Query: 178 SQRKLKWVQQNYMVYNYCTDTSRFPQGLPQEC 209
            QR ++WV++NYMVY+YC D  R+P   P EC
Sbjct: 233 QQRAMEWVRRNYMVYDYCDDRKRYP-VPPPEC 263

Xyloglucan endotransglycosylases (XETs) cleave and religate xyloglucan polymers in plant cell walls via a transglycosylation mechanism. Xyloglucan is a soluble hemicellulose with a backbone of beta-1,4-linked glucose units, partially substituted with alpha-1,6-linked xylopyranose branches. It binds noncovalently to cellulose, cross-linking the adjacent cellulose microfibrils, giving it a key structural role as a matrix polymer. Therefore, XET plays an important role in all plant processes that require cell wall remodeling. Length = 263
>gnl|CDD|178706 PLN03161, PLN03161, Probable xyloglucan endotransglucosylase/hydrolase protein; Provisional Back     alignment and domain information
>gnl|CDD|216081 pfam00722, Glyco_hydro_16, Glycosyl hydrolases family 16 Back     alignment and domain information
>gnl|CDD|185692 cd02183, GH16_fungal_CRH1_transglycosylase, glycosylphosphatidylinositol-glucanosyltransferase Back     alignment and domain information
>gnl|CDD|185683 cd00413, Glyco_hydrolase_16, glycosyl hydrolase family 16 Back     alignment and domain information
>gnl|CDD|219239 pfam06955, XET_C, Xyloglucan endo-transglycosylase (XET) C-terminus Back     alignment and domain information
>gnl|CDD|185684 cd02175, GH16_lichenase, lichenase, member of glycosyl hydrolase family 16 Back     alignment and domain information
>gnl|CDD|225182 COG2273, SKN1, Beta-glucanase/Beta-glucan synthetase [Carbohydrate transport and metabolism] Back     alignment and domain information
>gnl|CDD|185693 cd08023, GH16_laminarinase_like, Laminarinase, member of the glycosyl hydrolase family 16 Back     alignment and domain information
>gnl|CDD|185687 cd02178, GH16_beta_agarase, Beta-agarase, member of glycosyl hydrolase family 16 Back     alignment and domain information
>gnl|CDD|185694 cd08024, GH16_CCF, Coelomic cytolytic factor, member of glycosyl hydrolase family 16 Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 213
PLN03161291 Probable xyloglucan endotransglucosylase/hydrolase 100.0
cd02176263 GH16_XET Xyloglucan endotransglycosylase, member o 100.0
cd02183203 GH16_fungal_CRH1_transglycosylase glycosylphosphat 100.0
cd02175212 GH16_lichenase lichenase, member of glycosyl hydro 100.0
cd08023235 GH16_laminarinase_like Laminarinase, member of the 99.97
cd02178258 GH16_beta_agarase Beta-agarase, member of glycosyl 99.96
PF00722185 Glyco_hydro_16: Glycosyl hydrolases family 16; Int 99.96
cd00413210 Glyco_hydrolase_16 glycosyl hydrolase family 16. T 99.96
cd02182259 GH16_Strep_laminarinase_like Streptomyces laminari 99.96
cd02180295 GH16_fungal_KRE6_glucanase Saccharomyces cerevisia 99.95
cd02177269 GH16_kappa_carrageenase Kappa-carrageenase, member 99.94
cd08024330 GH16_CCF Coelomic cytolytic factor, member of glyc 99.93
cd02179321 GH16_beta_GRP beta-1,3-glucan recognition protein, 99.92
COG2273355 SKN1 Beta-glucanase/Beta-glucan synthetase [Carboh 99.85
PF0695551 XET_C: Xyloglucan endo-transglycosylase (XET) C-te 99.85
PF03935504 SKN1: Beta-glucan synthesis-associated protein (SK 99.51
cd02181293 GH16_fungal_Lam16A_glucanase fungal 1,3(4)-beta-D- 99.1
PF10287235 DUF2401: Putative TOS1-like glycosyl hydrolase (DU 93.84
smart00560133 LamGL LamG-like jellyroll fold domain. 92.67
PF13385157 Laminin_G_3: Concanavalin A-like lectin/glucanases 92.17
PF09264198 Sial-lect-inser: Vibrio cholerae sialidase, lectin 91.77
smart00210184 TSPN Thrombospondin N-terminal -like domains. Hepa 91.42
cd00152201 PTX Pentraxins are plasma proteins characterized b 90.38
smart00159206 PTX Pentraxin / C-reactive protein / pentaxin fami 90.15
PF06439185 DUF1080: Domain of Unknown Function (DUF1080); Int 86.06
PF09224218 DUF1961: Domain of unknown function (DUF1961); Int 80.34
>PLN03161 Probable xyloglucan endotransglucosylase/hydrolase protein; Provisional Back     alignment and domain information 
Probab=100.00  E-value=8.9e-74  Score=499.35  Aligned_cols=210  Identities=57%  Similarity=1.089  Sum_probs=193.6

Q ss_pred             CEEEeeCCCCCceEeeeEEecCCCCCCeeEEEEcCCCCCCceEEEeeEEeCCCCCceeeEEecCCCCCCcEEEEEEEeCC
Q 028152            1 MQLKLVPNNSAGTVTAYYLKSPGASWDEIDFEFLGNLSGNPYIVHTNVYTQGKGDREQQFYLWFDLTADFHTYSILWNPG   80 (213)
Q Consensus         1 ~riKlp~g~s~G~~~AFwl~~~~~~~~EIDiE~lG~~~g~p~~~~tn~~~~g~g~r~~~~~l~fd~~~dfHtY~i~W~p~   80 (213)
                      ||||||+|+++|+||||||++..+.+|||||||||+.+++|+++|||+|.+|.++|++++.++||++++||+|+|+|+|+
T Consensus        74 ~riKLp~G~saG~v~AFwl~s~~~~~dEIDiEfLG~~~g~~~~vqtN~y~~g~g~re~~~~l~fDpt~dFHtYsI~Wtp~  153 (291)
T PLN03161         74 MLIKLVPGNSAGTVTAYYLSSTGSRHDEIDFEFLGNVSGQPYTIHTNIYTQGNGSREQQFRPWFDPTADFHNYTIHWNPS  153 (291)
T ss_pred             EEEEeCCCCCCCeEEEEEecCCCCCCCeEEEEecCCCCCCceEEEeceEeCCcCCcceeccccCCCccCcEEEEEEEchh
Confidence            68999999899999999999976789999999999998999999999999999999999999999999999999999999


Q ss_pred             eEEEEEcCeEEEEEeccccCCcCCCCCCceeEEEEeeeCCCcccCCCccccCCCCCCeEEEEeEEEEEEEEeCCC--CCC
Q 028152           81 HIVFYIDGRPIREFKNLESFGIPYPKKQSMRMYASLWNADDWATRGGLAKTDWSQAPFTASFRNFNAKACVWSIG--ISS  158 (213)
Q Consensus        81 ~I~fyVDg~~vr~~~~~~~~g~~~P~~~Pm~l~lnlw~gg~Wat~GG~~~~d~~~~Pf~~~~~~~~v~~c~~~~~--~~~  158 (213)
                      +|+|||||++||++++.+..+.+||+++||+|++|||+|++|||+||++||||+++||+|.|++|+++||.++++  ...
T Consensus       154 ~I~wyVDG~~iRt~~~~~~~g~~yP~~~pM~i~~siW~g~~wAt~gG~~kidw~~aPf~a~~~~f~~~~C~~~~~~~~~~  233 (291)
T PLN03161        154 EVVWYVDGTPIRVFRNYENEGIAYPNKQGMRVYSSLWNADNWATQGGRVKIDWTLAPFVARGRRFRARACKWNGPVSIKQ  233 (291)
T ss_pred             hEEEEECCEEEEEEEcccccCCcCCCccceEEEEeeecCCCcccCCCceeccCCcCCeeEEeeeEEEEeeccCCCCCccc
Confidence            999999999999999877778899998999999999999999999999999999999999999999999998753  246


Q ss_pred             CCCCCCCCCCccc----cCCCHHHHHHHHHHhhcCeEeecccCCCCCCCCCCCCCcCC
Q 028152          159 CSLNPTTKNTWFS----QELDSSSQRKLKWVQQNYMVYNYCTDTSRFPQGLPQECTNK  212 (213)
Q Consensus       159 c~~~~~~~~~w~~----~~l~~~~~~~~~~~~~~~~~YdYC~d~~r~~~~~p~eC~~~  212 (213)
                      |...  +...||+    ++|+++|+++|+|||+||||||||+|++|||+++||||.++
T Consensus       234 c~~~--~~~~~~~~~~~~~l~~~~~~~~~~v~~~~m~Y~YC~D~~R~~~~~p~EC~~~  289 (291)
T PLN03161        234 CADP--TPSNWWTSPSYSQLTNAQLTQMKKVRDNFMIYDYCKDTKRFNGVMPPECFKP  289 (291)
T ss_pred             cCCC--CccccccCccccCCCHHHHHHHHHHHhCcEEEeccCCCCcCCCCcCcccCCC
Confidence            8642  1346876    48999999999999999999999999999998789999864

>cd02176 GH16_XET Xyloglucan endotransglycosylase, member of glycosyl hydrolase family 16 Back     alignment and domain information
>cd02183 GH16_fungal_CRH1_transglycosylase glycosylphosphatidylinositol-glucanosyltransferase Back     alignment and domain information
>cd02175 GH16_lichenase lichenase, member of glycosyl hydrolase family 16 Back     alignment and domain information
>cd08023 GH16_laminarinase_like Laminarinase, member of the glycosyl hydrolase family 16 Back     alignment and domain information
>cd02178 GH16_beta_agarase Beta-agarase, member of glycosyl hydrolase family 16 Back     alignment and domain information
>PF00722 Glyco_hydro_16: Glycosyl hydrolases family 16; InterPro: IPR000757 O-Glycosyl hydrolases 3 Back     alignment and domain information
>cd00413 Glyco_hydrolase_16 glycosyl hydrolase family 16 Back     alignment and domain information
>cd02182 GH16_Strep_laminarinase_like Streptomyces laminarinase-like, member of glycosyl hydrolase family 16 Back     alignment and domain information
>cd02180 GH16_fungal_KRE6_glucanase Saccharomyces cerevisiae KRE6 and related glucanses, member of glycosyl hydrolase family 16 Back     alignment and domain information
>cd02177 GH16_kappa_carrageenase Kappa-carrageenase, member of glycosyl hydrolase family 16 Back     alignment and domain information
>cd08024 GH16_CCF Coelomic cytolytic factor, member of glycosyl hydrolase family 16 Back     alignment and domain information
>cd02179 GH16_beta_GRP beta-1,3-glucan recognition protein, member of glycosyl hydrolase family 16 Back     alignment and domain information
>COG2273 SKN1 Beta-glucanase/Beta-glucan synthetase [Carbohydrate transport and metabolism] Back     alignment and domain information
>PF06955 XET_C: Xyloglucan endo-transglycosylase (XET) C-terminus; InterPro: IPR010713 This entry represents the C terminus (approximately 60 residues) of plant xyloglucan endo-transglycosylase (XET) Back     alignment and domain information
>PF03935 SKN1: Beta-glucan synthesis-associated protein (SKN1); InterPro: IPR005629 This family consists of the beta-glucan synthesis-associated proteins KRE6 and SKN1 Back     alignment and domain information
>cd02181 GH16_fungal_Lam16A_glucanase fungal 1,3(4)-beta-D-glucanases, similar to Phanerochaete chrysosporium laminarinase 16A Back     alignment and domain information
>PF10287 DUF2401: Putative TOS1-like glycosyl hydrolase (DUF2401); InterPro: IPR018805 This entry represents a family of proteins conserved primarily in fungi Back     alignment and domain information
>smart00560 LamGL LamG-like jellyroll fold domain Back     alignment and domain information
>PF13385 Laminin_G_3: Concanavalin A-like lectin/glucanases superfamily; PDB: 4DQA_A 1N1Y_A 1MZ6_A 1MZ5_A 1N1S_A 2A75_A 1WCS_A 1N1T_A 1N1V_A 2FHR_A Back     alignment and domain information
>PF09264 Sial-lect-inser: Vibrio cholerae sialidase, lectin insertion; InterPro: IPR015344 This domain is predominantly found in Vibrio cholerae sialidase, and adopt a beta sandwich structure consisting of 12-14 strands arranged in two beta-sheets Back     alignment and domain information
>smart00210 TSPN Thrombospondin N-terminal -like domains Back     alignment and domain information
>cd00152 PTX Pentraxins are plasma proteins characterized by their pentameric discoid assembly and their Ca2+ dependent ligand binding, such as Serum amyloid P component (SAP) and C-reactive Protein (CRP), which are cytokine-inducible acute-phase proteins implicated in innate immunity Back     alignment and domain information
>smart00159 PTX Pentraxin / C-reactive protein / pentaxin family Back     alignment and domain information
>PF06439 DUF1080: Domain of Unknown Function (DUF1080); InterPro: IPR010496 This is a family of proteins of unknown function Back     alignment and domain information
>PF09224 DUF1961: Domain of unknown function (DUF1961); InterPro: IPR015305 Members of this family are found in a set of hypothetical bacterial proteins Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query213
1umz_A278 Xyloglucan Endotransglycosylase In Complex With The 2e-67
2vh9_A290 Crystal Structure Of Nxg1-Deltayniig In Complex Wit 2e-38
2uwb_A267 Crystal Structure Of The Nasturtium Seedling Mutant 3e-38
2uwc_A271 Crystal Structure Of Nasturtium Xyloglucan Hydrolas 1e-36
2uwa_A274 Crystal Structure Of The Nasturtium Seedling Xylogl 2e-36
1axk_A 394 Engineered Bacillus Bifunctional Enzyme Gluxyn-1 Le 3e-12
1cpm_A214 Native-Like In Vivo Folding Of A Circularly Permute 3e-12
1byh_A214 Molecular And Active-Site Structure Of A Bacillus ( 3e-12
1cpn_A208 Native-Like In Vivo Folding Of A Circularly Permute 4e-12
1mac_A212 Crystal Structure And Site-Directed Mutagenesis Of 4e-12
3d6e_A201 Crystal Structure Of The Engineered 1,3-1,4-Beta-Gl 9e-12
1u0a_A214 Crystal Structure Of The Engineered Beta-1,3-1,4-En 2e-11
1ajk_A214 Circularly Permuted (1-3,1-4)-Beta-D-Glucan 4- Gluc 4e-11
3o5s_A238 Crystal Structure Of The Endo-Beta-1,3-1,4 Glucanas 2e-10
1gbg_A214 Bacillus Licheniformis Beta-Glucanase Length = 214 2e-10
3i4i_A234 Crystal Structure Of A Prokaryotic Beta-1,3-1,4-Glu 7e-10
1ajo_A214 Circularly Permuted (1-3,1-4)-Beta-D-Glucan 4- Gluc 2e-04
3h0o_A240 The Importance Of Ch-Pi Stacking Interactions Betwe 3e-04
2r49_A241 Mutational And Structural Studies Of E85i Reveal Th 3e-04
1mve_A243 Crystal Structure Of A Natural Circularly-Permutate 3e-04
1zm1_A241 Crystal Structures Of Complex F. Succinogenes 1,3-1 3e-04
3hr9_A241 The Truncated Fibrobacter Succinogenes 1,3-1,4-Beta 6e-04
>pdb|1UMZ|A Chain A, Xyloglucan Endotransglycosylase In Complex With The Xyloglucan Nonasaccharide Xllg. Length = 278 Back     alignment and structure 
Iteration: 1

 Score =  251 bits (640), Expect = 2e-67,   Method: Compositional matrix adjust.
 Identities = 121/213 (56%), Positives = 152/213 (71%), Gaps = 8/213 (3%)
Query: 1   MQLKLVPNNSAGTVTAYYLKSPGASWDEIDFEFLGNLSGNPYIVHTNVYTQGKGDREQQF 60
           MQ+KLVP +SAGTVTA+YL S  +  DEIDFEFLGN +G PYI+ TNV+T GKGDREQ+ 
Sbjct: 64  MQMKLVPGDSAGTVTAFYLSSQNSEHDEIDFEFLGNRTGQPYILQTNVFTGGKGDREQRI 123
Query: 61  YLWFDLTADFHTYSILWNPGHIVFYIDGRPIREFKNLESFGIPYPKKQSMRMYASLWNAD 120
           YLWFD T +FH YS+LWN   IVF +D  PIR FKN +  G+ +P  Q M++Y+SLWNAD
Sbjct: 124 YLWFDPTKEFHYYSVLWNMYMIVFLVDDVPIRVFKNCKDLGVKFPFNQPMKIYSSLWNAD 183
Query: 121 DWATRGGLAKTDWSQAPFTASFRNFNAKACVWSIGISSCSLNPTTKNTWFS----QELDS 176
           DWATRGGL KTDWS+APF AS+R+F+   C  S+    C+   T    W+     Q+LD+
Sbjct: 184 DWATRGGLEKTDWSKAPFIASYRSFHIDGCEASVEAKFCA---TQGARWWDQKEFQDLDA 240
Query: 177 SSQRKLKWVQQNYMVYNYCTDTSRFPQGLPQEC 209
              R+L WV+Q Y +YNYCTD SR+P  +P EC
Sbjct: 241 FQYRRLSWVRQKYTIYNYCTDRSRYP-SMPPEC 272
>pdb|2VH9|A Chain A, Crystal Structure Of Nxg1-Deltayniig In Complex With Xllg, A Xyloglucan Derived Oligosaccharide Length = 290 Back     alignment and structure
>pdb|2UWB|A Chain A, Crystal Structure Of The Nasturtium Seedling Mutant Xyloglucanase Isoform Nxg1-Delta-Yniig Length = 267 Back     alignment and structure
>pdb|2UWC|A Chain A, Crystal Structure Of Nasturtium Xyloglucan Hydrolase Isoform Nxg2 Length = 271 Back     alignment and structure
>pdb|2UWA|A Chain A, Crystal Structure Of The Nasturtium Seedling Xyloglucanase Isoform Nxg1 Length = 274 Back     alignment and structure
>pdb|1AXK|A Chain A, Engineered Bacillus Bifunctional Enzyme Gluxyn-1 Length = 394 Back     alignment and structure
>pdb|1CPM|A Chain A, Native-Like In Vivo Folding Of A Circularly Permuted Jellyroll Protein Shown By Crystal Structure Analysis Length = 214 Back     alignment and structure
>pdb|1BYH|A Chain A, Molecular And Active-Site Structure Of A Bacillus (1-3,1-4)- Beta-Glucanase Length = 214 Back     alignment and structure
>pdb|1CPN|A Chain A, Native-Like In Vivo Folding Of A Circularly Permuted Jellyroll Protein Shown By Crystal Structure Analysis Length = 208 Back     alignment and structure
>pdb|1MAC|A Chain A, Crystal Structure And Site-Directed Mutagenesis Of Bacillus Macerans Endo-1,3-1,4-Beta-Glucanase Length = 212 Back     alignment and structure
>pdb|3D6E|A Chain A, Crystal Structure Of The Engineered 1,3-1,4-Beta-Glucanase Protein From Bacillus Licheniformis Length = 201 Back     alignment and structure
>pdb|1U0A|A Chain A, Crystal Structure Of The Engineered Beta-1,3-1,4-Endoglucanase H(A16- M) In Complex With Beta-Glucan Tetrasaccharide Length = 214 Back     alignment and structure
>pdb|1AJK|A Chain A, Circularly Permuted (1-3,1-4)-Beta-D-Glucan 4- Glucanohydrolase Cpa16m-84 Length = 214 Back     alignment and structure
>pdb|3O5S|A Chain A, Crystal Structure Of The Endo-Beta-1,3-1,4 Glucanase From Bacillus Subtilis (Strain 168) Length = 238 Back     alignment and structure
>pdb|1GBG|A Chain A, Bacillus Licheniformis Beta-Glucanase Length = 214 Back     alignment and structure
>pdb|3I4I|A Chain A, Crystal Structure Of A Prokaryotic Beta-1,3-1,4-Glucanase (Lichenase) Derived From A Mouse Hindgut Metagenome Length = 234 Back     alignment and structure
>pdb|1AJO|A Chain A, Circularly Permuted (1-3,1-4)-Beta-D-Glucan 4- Glucanohydrolase Cpa16m-127 Length = 214 Back     alignment and structure
>pdb|3H0O|A Chain A, The Importance Of Ch-Pi Stacking Interactions Between Carbohydrate And Aromatic Residues In Truncated Fibrobacter Succinogenes 1,3-1,4-Beta-D-Glucanase Length = 240 Back     alignment and structure
>pdb|2R49|A Chain A, Mutational And Structural Studies Of E85i Reveal The Flexible Loops Of Fibrobacter Succinogenes 1,3-1,4-beta-d- Glucanaseglucanase Length = 241 Back     alignment and structure
>pdb|1MVE|A Chain A, Crystal Structure Of A Natural Circularly-Permutated Jellyroll Protein: 1,3-1,4-Beta-D-Glucanase From Fibrobacter Succinogenes Length = 243 Back     alignment and structure
>pdb|1ZM1|A Chain A, Crystal Structures Of Complex F. Succinogenes 1,3-1,4-Beta- D-Glucanase And Beta-1,3-1,4-Cellotriose Length = 241 Back     alignment and structure
>pdb|3HR9|A Chain A, The Truncated Fibrobacter Succinogenes 1,3-1,4-Beta-D- Glucanase F40i Mutant Length = 241 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query213
1umz_A278 Xyloglucan endotransglycosylase; glycoside hydrola 7e-88
2uwa_A274 Cellulase; glycoside hydrolase, xyloglucan-endo-tr 1e-76
1cpn_A208 Circularly permuted; hydrolase(glucanase); 1.80A { 1e-54
1ajk_A214 CPA16M-84, circularly permuted (1-3,1-4)-beta-D-gl 2e-51
3o5s_A238 Beta-glucanase; glycosyl hydrolase, beta-jelly rol 1e-49
3h0o_A240 Beta-glucanase; 1,3-1,4-beta-D-glucanase, CH-PI st 2e-47
2ayh_A214 1,3-1,4-beta-D-glucan 4-glucanohydrolase; hydrolas 2e-47
1axk_A 394 Gluxyn-1; bifunctional, fusion protein, 1,4-beta-x 1e-46
3i4i_A234 1,3-1,4-beta-glucanase; beta-sandwich, hydrolase; 1e-46
1ajo_A214 CPA16M-127, circularly permuted (1-3,1-4)-beta-D-g 2e-21
1ajo_A214 CPA16M-127, circularly permuted (1-3,1-4)-beta-D-g 6e-10
1dyp_A271 Kappa-carrageenase; hydrolase, kappa-carrageenan d 3e-10
1ups_A420 Glcnac-alpha-1,4-GAL-releasing endo-beta- galactos 4e-10
3juu_A280 Porphyranase B; glycoside hydrolase family GH16, b 1e-09
2hyk_A245 Beta-1,3-glucanase; family 16, beta-jelly roll, ba 1e-09
3iln_A251 Laminarinase; jelly ROW, hydrolase, family 16 glyc 5e-09
4ate_A266 Beta-porphyranase A; hydrolase, AGAR degradation; 6e-09
3azy_A272 Laminarinase; beta-jelly roll fold, glycosyl hydro 3e-08
2vy0_A264 Endo-beta-1,3-glucanase; hydrolase, laminarin, end 4e-08
4awd_A324 Beta-porphyranase; hydrolase; 2.40A {Bacteroides p 5e-08
3rq0_A269 Glycosyl hydrolases family protein 16; structural 5e-08
1o4y_A288 Beta-agarase A; glycoside hydrolase family 16, aga 4e-07
4asm_B363 Beta-agarase D; hydrolase, glycoside hydrolase, en 6e-07
3dgt_A280 Endo-1,3-beta-glucanase; GHF16, hydrolase, 1; 1.50 4e-06
4atf_A308 Beta-agarase B; hydrolase, polysaccharidase, agaro 8e-04
>1umz_A Xyloglucan endotransglycosylase; glycoside hydrolase, XET, XTH, XEH, transglycosylation, transferase, glycosyltransferase; HET: NAG BMA BGC GAL; 1.8A {Populus tremula} SCOP: b.29.1.2 PDB: 1un1_A* Length = 278 Back     alignment and structure
 Score =  259 bits (663), Expect = 7e-88
 Identities = 119/211 (56%), Positives = 150/211 (71%), Gaps = 2/211 (0%)

Query: 1   MQLKLVPNNSAGTVTAYYLKSPGASWDEIDFEFLGNLSGNPYIVHTNVYTQGKGDREQQF 60
           MQ+KLVP +SAGTVTA+YL S  +  DEIDFEFLGN +G PYI+ TNV+T GKGDREQ+ 
Sbjct: 64  MQMKLVPGDSAGTVTAFYLSSQNSEHDEIDFEFLGNRTGQPYILQTNVFTGGKGDREQRI 123

Query: 61  YLWFDLTADFHTYSILWNPGHIVFYIDGRPIREFKNLESFGIPYPKKQSMRMYASLWNAD 120
           YLWFD T +FH YS+LWN   IVF +D  PIR FKN +  G+ +P  Q M++Y+SLWNAD
Sbjct: 124 YLWFDPTKEFHYYSVLWNMYMIVFLVDDVPIRVFKNCKDLGVKFPFNQPMKIYSSLWNAD 183

Query: 121 DWATRGGLAKTDWSQAPFTASFRNFNAKACVWSIGISSCSLNPT-TKNTWFSQELDSSSQ 179
           DWATRGGL KTDWS+APF AS+R+F+   C  S+    C+       +    Q+LD+   
Sbjct: 184 DWATRGGLEKTDWSKAPFIASYRSFHIDGCEASVEAKFCATQGARWWDQKEFQDLDAFQY 243

Query: 180 RKLKWVQQNYMVYNYCTDTSRFPQGLPQECT 210
           R+L WV+Q Y +YNYCTD SR+P  +P EC 
Sbjct: 244 RRLSWVRQKYTIYNYCTDRSRYPS-MPPECK 273
>2uwa_A Cellulase; glycoside hydrolase, xyloglucan-endo-transferase, hydrolase, glycosidase, family GH16, tropaeolum majus xyloglucanase; 1.8A {Tropaeolum majus} PDB: 2uwc_A 2uwb_A 2vh9_A* Length = 274 Back     alignment and structure
>1cpn_A Circularly permuted; hydrolase(glucanase); 1.80A {Paenibacillus macerans} SCOP: b.29.1.2 PDB: 1cpm_A Length = 208 Back     alignment and structure
>1ajk_A CPA16M-84, circularly permuted (1-3,1-4)-beta-D-glucan 4- glucanohydrolase; glucanase, circular permutation; HET: EPE; 1.80A {Paenibacillus macerans} SCOP: b.29.1.2 Length = 214 Back     alignment and structure
>3o5s_A Beta-glucanase; glycosyl hydrolase, beta-jelly roll, hydrolase; HET: B3P; 2.20A {Bacillus subtilis} PDB: 3d6e_A Length = 238 Back     alignment and structure
>3h0o_A Beta-glucanase; 1,3-1,4-beta-D-glucanase, CH-PI stacking interactions, TRIS inhibition, hydrolase, glycosidase; 1.40A {Fibrobacter succinogenes} PDB: 1mve_A 1zm1_A* 2r4a_A 3hr9_A 2r49_A 3axd_A 3axe_A* Length = 240 Back     alignment and structure
>2ayh_A 1,3-1,4-beta-D-glucan 4-glucanohydrolase; hydrolase (glucanase); 1.60A {Hybrid} SCOP: b.29.1.2 PDB: 1byh_A 1glh_A 1u0a_A* 1mac_A 1gbg_A Length = 214 Back     alignment and structure
>1axk_A Gluxyn-1; bifunctional, fusion protein, 1,4-beta-xylanase, 1,3-1,4-beta-glucanase, hybrid enzyme; 2.10A {Bacillus subtilis} SCOP: b.29.1.2 b.29.1.11 Length = 394 Back     alignment and structure
>3i4i_A 1,3-1,4-beta-glucanase; beta-sandwich, hydrolase; 1.89A {Uncultured murine large bowel bacteriuorganism_taxid} Length = 234 Back     alignment and structure
>1ajo_A CPA16M-127, circularly permuted (1-3,1-4)-beta-D-glucan 4- glucanohydrolase CPA16M-127; glucanase, circular permutation; 2.07A {Paenibacillus macerans} SCOP: b.29.1.2 Length = 214 Back     alignment and structure
>1ajo_A CPA16M-127, circularly permuted (1-3,1-4)-beta-D-glucan 4- glucanohydrolase CPA16M-127; glucanase, circular permutation; 2.07A {Paenibacillus macerans} SCOP: b.29.1.2 Length = 214 Back     alignment and structure
>1dyp_A Kappa-carrageenase; hydrolase, kappa-carrageenan double helix degradation; HET: MSE; 1.54A {Pseudoalteromonas carrageenovora} SCOP: b.29.1.2 Length = 271 Back     alignment and structure
>1ups_A Glcnac-alpha-1,4-GAL-releasing endo-beta- galactosidase; endo-galactosidase, glycosyl hydrolase, PSI, protein structure initiative; 1.82A {Clostridium perfringens} SCOP: b.29.1.2 b.42.2.3 Length = 420 Back     alignment and structure
>3juu_A Porphyranase B; glycoside hydrolase family GH16, beta-sandwich fold, jelly roll, sugar binding protein, hydrolase-carbohydrate complex; HET: MES GOL; 1.80A {Zobellia galactanivorans} Length = 280 Back     alignment and structure
>2hyk_A Beta-1,3-glucanase; family 16, beta-jelly roll, bacterial endo-beta-1,3-glucanas hydrolase; 1.30A {Nocardiopsis SP} PDB: 3atg_A Length = 245 Back     alignment and structure
>3iln_A Laminarinase; jelly ROW, hydrolase, family 16 glycosyl hydrolase; 1.95A {Rhodothermus marinus} Length = 251 Back     alignment and structure
>4ate_A Beta-porphyranase A; hydrolase, AGAR degradation; 1.10A {Zobellia galactanivorans} PDB: 3ilf_A* Length = 266 Back     alignment and structure
>3azy_A Laminarinase; beta-jelly roll fold, glycosyl hydrolase family 16, laminari endo-1,3-beta-glucanase, hydrolase; 1.65A {Thermotoga maritima} PDB: 3azx_A 3azz_A* 3b00_A* 3b01_A 4dfs_A Length = 272 Back     alignment and structure
>2vy0_A Endo-beta-1,3-glucanase; hydrolase, laminarin, endoglucanase, thermostable protein,; 2.16A {Pyrococcus furiosus} Length = 264 Back     alignment and structure
>4awd_A Beta-porphyranase; hydrolase; 2.40A {Bacteroides plebeius} Length = 324 Back     alignment and structure
>3rq0_A Glycosyl hydrolases family protein 16; structural genomics, PSI-biology; HET: PG4 211; 2.02A {Mycobacterium smegmatis} Length = 269 Back     alignment and structure
>1o4y_A Beta-agarase A; glycoside hydrolase family 16, agarose degradation, cleavage of beta-1, 4-D-galactose linkages; HET: SO4; 1.48A {Zobellia galactanivorans} SCOP: b.29.1.2 PDB: 1urx_A* Length = 288 Back     alignment and structure
>4asm_B Beta-agarase D; hydrolase, glycoside hydrolase, endo-beta-agarase; 1.50A {Zobellia galactanivorans} Length = 363 Back     alignment and structure
>3dgt_A Endo-1,3-beta-glucanase; GHF16, hydrolase, 1; 1.50A {Streptomyces sioyaensis} Length = 280 Back     alignment and structure
>4atf_A Beta-agarase B; hydrolase, polysaccharidase, agarolytic enzyme; HET: AAL GAL; 1.90A {Zobellia galactanivorans} Length = 308 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query213
1umz_A278 Xyloglucan endotransglycosylase; glycoside hydrola 100.0
2uwa_A274 Cellulase; glycoside hydrolase, xyloglucan-endo-tr 100.0
3o5s_A238 Beta-glucanase; glycosyl hydrolase, beta-jelly rol 100.0
3i4i_A234 1,3-1,4-beta-glucanase; beta-sandwich, hydrolase; 100.0
3iln_A251 Laminarinase; jelly ROW, hydrolase, family 16 glyc 100.0
1cpn_A208 Circularly permuted; hydrolase(glucanase); 1.80A { 100.0
3h0o_A240 Beta-glucanase; 1,3-1,4-beta-D-glucanase, CH-PI st 100.0
2ayh_A214 1,3-1,4-beta-D-glucan 4-glucanohydrolase; hydrolas 100.0
2hyk_A245 Beta-1,3-glucanase; family 16, beta-jelly roll, ba 100.0
1ajk_A214 CPA16M-84, circularly permuted (1-3,1-4)-beta-D-gl 100.0
1axk_A 394 Gluxyn-1; bifunctional, fusion protein, 1,4-beta-x 100.0
3azy_A272 Laminarinase; beta-jelly roll fold, glycosyl hydro 100.0
2vy0_A264 Endo-beta-1,3-glucanase; hydrolase, laminarin, end 100.0
4ate_A266 Beta-porphyranase A; hydrolase, AGAR degradation; 99.98
3juu_A280 Porphyranase B; glycoside hydrolase family GH16, b 99.97
4awd_A324 Beta-porphyranase; hydrolase; 2.40A {Bacteroides p 99.97
3rq0_A269 Glycosyl hydrolases family protein 16; structural 99.97
3dgt_A280 Endo-1,3-beta-glucanase; GHF16, hydrolase, 1; 1.50 99.97
1o4y_A288 Beta-agarase A; glycoside hydrolase family 16, aga 99.97
1dyp_A271 Kappa-carrageenase; hydrolase, kappa-carrageenan d 99.97
1o4z_A346 Beta-agarase B; glycoside hydrolase family 16, aga 99.96
4atf_A308 Beta-agarase B; hydrolase, polysaccharidase, agaro 99.96
1ups_A420 Glcnac-alpha-1,4-GAL-releasing endo-beta- galactos 99.96
4asm_B363 Beta-agarase D; hydrolase, glycoside hydrolase, en 99.89
2w39_A298 Putative laminarinase; hydrolase, white ROT fungus 99.89
1ajo_A214 CPA16M-127, circularly permuted (1-3,1-4)-beta-D-g 99.84
3flp_A217 SAP-like pentraxin; physiological doubly-stacked h 94.84
3pvn_A206 C-reactive protein; pentraxin family, immune syste 89.91
3kqr_A204 Serum amyloid P-component; glycoprotein, disulfide 88.65
4dqa_A355 Uncharacterized protein; two domains structure, DU 87.22
2v73_A191 CBM40, putative EXO-alpha-sialidase; carbohydrate- 86.14
>1umz_A Xyloglucan endotransglycosylase; glycoside hydrolase, XET, XTH, XEH, transglycosylation, transferase, glycosyltransferase; HET: NAG BMA BGC GAL; 1.8A {Populus tremula} SCOP: b.29.1.2 PDB: 1un1_A* Back     alignment and structure
Probab=100.00  E-value=1.4e-68  Score=466.06  Aligned_cols=207  Identities=58%  Similarity=1.111  Sum_probs=191.7

Q ss_pred             CEEEeeCCCCCceEeeeEEecCCCCCCeeEEEEcCCCCCCceEEEeeEEeCCCCCceeeEEecCCCCCCcEEEEEEEeCC
Q 028152            1 MQLKLVPNNSAGTVTAYYLKSPGASWDEIDFEFLGNLSGNPYIVHTNVYTQGKGDREQQFYLWFDLTADFHTYSILWNPG   80 (213)
Q Consensus         1 ~riKlp~g~s~G~~~AFwl~~~~~~~~EIDiE~lG~~~g~p~~~~tn~~~~g~g~r~~~~~l~fd~~~dfHtY~i~W~p~   80 (213)
                      ||||||+|+++|+||||||+++.|.++|||||++|+.+++++++|+|+|.+|.+++++++.+++|++++||+|+|+|+|+
T Consensus        64 ar~Klp~g~s~G~wpAfwll~~~p~~gEIDmE~lG~~~g~~~tvhtn~~~~g~~~~~~~~~l~~d~~~dFHtY~i~Wtp~  143 (278)
T 1umz_A           64 MQMKLVPGDSAGTVTAFYLSSQNSEHDEIDFEFLGNRTGQPYILQTNVFTGGKGDREQRIYLWFDPTKEFHYYSVLWNMY  143 (278)
T ss_dssp             EEEECCCSCCTTEEEEEEEECSSSSCCEEEEEEECCSTTSCCEEEEEEEBTTBCCCCEEECCSSCTTTSCEEEEEEECSS
T ss_pred             EEEEeCCCCCCceEEEEEEecCCCCCCeEEEEEeCCCCCCceEEEEEEecCCCCCCcceEecCCCCccCcEEEEEEEecC
Confidence            69999999889999999999988899999999999988889999999999999889999999999999999999999999


Q ss_pred             eEEEEEcCeEEEEEeccccCCcCCCCCCceeEEEEeeeCCCcccCCCccccCCCCCCeEEEEeEEEEEEEEeCCCCCCCC
Q 028152           81 HIVFYIDGRPIREFKNLESFGIPYPKKQSMRMYASLWNADDWATRGGLAKTDWSQAPFTASFRNFNAKACVWSIGISSCS  160 (213)
Q Consensus        81 ~I~fyVDg~~vr~~~~~~~~g~~~P~~~Pm~l~lnlw~gg~Wat~GG~~~~d~~~~Pf~~~~~~~~v~~c~~~~~~~~c~  160 (213)
                      +|+|||||++|+++++.+..+.+||+++||+|+||||+||+|+++||++++||+++||+++|+.+++.+|.++.+.++|.
T Consensus       144 ~I~fyVDG~~v~t~~~~~~~g~~~Pf~~P~~lilnlw~GG~Wa~~gG~~~~d~~~~p~v~~vr~~~~~~c~~~~~~~~c~  223 (278)
T 1umz_A          144 MIVFLVDDVPIRVFKNCKDLGVKFPFNQPMKIYSSLWNADDWATRGGLEKTDWSKAPFIASYRSFHIDGCEASVEAKFCA  223 (278)
T ss_dssp             EEEEEETTEEEEEEECCGGGTCCCSCSSCBEEEEEEEECTTTSSGGGTSCCCGGGCCEEEEEEEEEEEEEECCSSSCCCT
T ss_pred             eEEEEECCeEEEEEecCcCcCccCcCCCceEEEEEEEECCcccCCCCccccCCCCCCEEEEEEEEEEecccCCCCCCccC
Confidence            99999999999999987766788998899999999999999999999889999999999999999999999765545686


Q ss_pred             CCCCCCCCcccc----CCCHHHHHHHHHHhhcCeEeecccCCCCCCCCCCCCCcC
Q 028152          161 LNPTTKNTWFSQ----ELDSSSQRKLKWVQQNYMVYNYCTDTSRFPQGLPQECTN  211 (213)
Q Consensus       161 ~~~~~~~~w~~~----~l~~~~~~~~~~~~~~~~~YdYC~d~~r~~~~~p~eC~~  211 (213)
                      .   ....||++    +|+++|+++|+|||+||||||||+|++|||+ +|+||.+
T Consensus       224 ~---~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~y~yc~d~~r~~~-~~~ec~~  274 (278)
T 1umz_A          224 T---QGARWWDQKEFQDLDAFQYRRLSWVRQKYTIYNYCTDRSRYPS-MPPECKR  274 (278)
T ss_dssp             T---TTCSGGGSGGGSSCCHHHHHHHHHHHHHTEEEEGGGCTTTCSS-CCTHHHH
T ss_pred             C---CcccccccCccccCCHHHHHHHHHHHHCCeEEecCCCCCcCCC-CCcccCC
Confidence            4   23458876    8999999999999999999999999999998 8999963
>2uwa_A Cellulase; glycoside hydrolase, xyloglucan-endo-transferase, hydrolase, glycosidase, family GH16, tropaeolum majus xyloglucanase; 1.8A {Tropaeolum majus} PDB: 2uwc_A 2uwb_A 2vh9_A* Back     alignment and structure
>3o5s_A Beta-glucanase; glycosyl hydrolase, beta-jelly roll, hydrolase; HET: B3P; 2.20A {Bacillus subtilis} PDB: 3d6e_A Back     alignment and structure
>3i4i_A 1,3-1,4-beta-glucanase; beta-sandwich, hydrolase; 1.89A {Uncultured murine large bowel bacteriuorganism_taxid} Back     alignment and structure
>3iln_A Laminarinase; jelly ROW, hydrolase, family 16 glycosyl hydrolase; 1.95A {Rhodothermus marinus} Back     alignment and structure
>1cpn_A Circularly permuted; hydrolase(glucanase); 1.80A {Paenibacillus macerans} SCOP: b.29.1.2 PDB: 1cpm_A Back     alignment and structure
>3h0o_A Beta-glucanase; 1,3-1,4-beta-D-glucanase, CH-PI stacking interactions, TRIS inhibition, hydrolase, glycosidase; 1.40A {Fibrobacter succinogenes} SCOP: b.29.1.2 PDB: 1mve_A 1zm1_A* 2r4a_A 3hr9_A 2r49_A 3axd_A 3axe_A* Back     alignment and structure
>2ayh_A 1,3-1,4-beta-D-glucan 4-glucanohydrolase; hydrolase (glucanase); 1.60A {Hybrid} SCOP: b.29.1.2 PDB: 1byh_A 1glh_A 1u0a_A* 1mac_A 1gbg_A Back     alignment and structure
>2hyk_A Beta-1,3-glucanase; family 16, beta-jelly roll, bacterial endo-beta-1,3-glucanas hydrolase; 1.30A {Nocardiopsis SP} PDB: 3atg_A Back     alignment and structure
>1ajk_A CPA16M-84, circularly permuted (1-3,1-4)-beta-D-glucan 4- glucanohydrolase; glucanase, circular permutation; HET: EPE; 1.80A {Paenibacillus macerans} SCOP: b.29.1.2 Back     alignment and structure
>1axk_A Gluxyn-1; bifunctional, fusion protein, 1,4-beta-xylanase, 1,3-1,4-beta-glucanase, hybrid enzyme; 2.10A {Bacillus subtilis} SCOP: b.29.1.2 b.29.1.11 Back     alignment and structure
>3azy_A Laminarinase; beta-jelly roll fold, glycosyl hydrolase family 16, laminari endo-1,3-beta-glucanase, hydrolase; 1.65A {Thermotoga maritima} PDB: 3azx_A 3azz_A* 3b00_A* 3b01_A 4dfs_A Back     alignment and structure
>2vy0_A Endo-beta-1,3-glucanase; hydrolase, laminarin, endoglucanase, thermostable protein,; 2.16A {Pyrococcus furiosus} Back     alignment and structure
>4ate_A Beta-porphyranase A; hydrolase, AGAR degradation; 1.10A {Zobellia galactanivorans} PDB: 3ilf_A* Back     alignment and structure
>3juu_A Porphyranase B; glycoside hydrolase family GH16, beta-sandwich fold, jelly roll, sugar binding protein, hydrolase-carbohydrate complex; HET: MES GOL; 1.80A {Zobellia galactanivorans} Back     alignment and structure
>4awd_A Beta-porphyranase; hydrolase; 2.40A {Bacteroides plebeius} Back     alignment and structure
>3rq0_A Glycosyl hydrolases family protein 16; structural genomics, PSI-biology; HET: PG4 211; 2.02A {Mycobacterium smegmatis} Back     alignment and structure
>3dgt_A Endo-1,3-beta-glucanase; GHF16, hydrolase, 1; 1.50A {Streptomyces sioyaensis} Back     alignment and structure
>1o4y_A Beta-agarase A; glycoside hydrolase family 16, agarose degradation, cleavage of beta-1, 4-D-galactose linkages; HET: SO4; 1.48A {Zobellia galactanivorans} SCOP: b.29.1.2 PDB: 1urx_A* Back     alignment and structure
>1dyp_A Kappa-carrageenase; hydrolase, kappa-carrageenan double helix degradation; HET: MSE; 1.54A {Pseudoalteromonas carrageenovora} SCOP: b.29.1.2 Back     alignment and structure
>1o4z_A Beta-agarase B; glycoside hydrolase family 16, agarose degradation, cleavage of beta-1, 4-D-galactose linkages; HET: EPE; 2.30A {Zobellia galactanivorans} SCOP: b.29.1.2 Back     alignment and structure
>4atf_A Beta-agarase B; hydrolase, polysaccharidase, agarolytic enzyme; HET: AAL GAL; 1.90A {Zobellia galactanivorans} Back     alignment and structure
>1ups_A Glcnac-alpha-1,4-GAL-releasing endo-beta- galactosidase; endo-galactosidase, glycosyl hydrolase, PSI, protein structure initiative; 1.82A {Clostridium perfringens} SCOP: b.29.1.2 b.42.2.3 Back     alignment and structure
>4asm_B Beta-agarase D; hydrolase, glycoside hydrolase, endo-beta-agarase; 1.50A {Zobellia galactanivorans} Back     alignment and structure
>2w39_A Putative laminarinase; hydrolase, white ROT fungus, glycosyl hydrolase, GH7, GH16, LAM16A, family 16, beta-glucan, basidiomycete; HET: NAG BGC LGC; 1.10A {Phanerochaete chrysosporium} PDB: 2cl2_A* 2w52_A* 2wlq_A* 2wne_A* Back     alignment and structure
>1ajo_A CPA16M-127, circularly permuted (1-3,1-4)-beta-D-glucan 4- glucanohydrolase CPA16M-127; glucanase, circular permutation; 2.07A {Paenibacillus macerans} SCOP: b.29.1.2 Back     alignment and structure
>3flp_A SAP-like pentraxin; physiological doubly-stacked heptamer, pentraxin fold, cyclic heptamer, invertebrate lectin, sugar binding protein; 2.30A {Limulus polyphemus} PDB: 3flr_A 3flt_A Back     alignment and structure
>3pvn_A C-reactive protein; pentraxin family, immune system; 1.98A {Homo sapiens} SCOP: b.29.1.5 PDB: 1gnh_A 1lj7_A 3l2y_A 1b09_A 3pvo_A Back     alignment and structure
>3kqr_A Serum amyloid P-component; glycoprotein, disulfide bond, lectin, metal-binding secreted; HET: NAG; 1.50A {Homo sapiens} SCOP: b.29.1.5 PDB: 1lgn_A* 1gyk_A 2a3w_A* 2a3x_A* 2a3y_A* 1sac_A* 3d5o_A* 2w08_A* Back     alignment and structure
>4dqa_A Uncharacterized protein; two domains structure, DUF 1735, laminin_G_3 concanavalin A- lectin/glucanases superfamily domain; HET: MSE; 1.50A {Bacteroides ovatus} Back     alignment and structure
>2v73_A CBM40, putative EXO-alpha-sialidase; carbohydrate-binding module, bacterial pathogen, sialic acid, sugar-binding protein; HET: SIA; 2.2A {Clostridium perfringens} Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 213
d1umza_267 b.29.1.2 (A:) Xyloglucan endotransglycosylase {Eur 2e-81
d1ajka_214 b.29.1.2 (A:) Bacillus 1-3,1-4-beta-glucanase {Bac 7e-45
d1mvea_243 b.29.1.2 (A:) Bacillus 1-3,1-4-beta-glucanase {Fib 1e-16
d2ayha_214 b.29.1.2 (A:) Bacillus 1-3,1-4-beta-glucanase {syn 3e-14
d1dypa_271 b.29.1.2 (A:) kappa-Carrageenase, catalytic {Pseud 5e-07
d1o4ya_270 b.29.1.2 (A:) beta-Agarase A {Zobellia galactanivo 7e-05
d1upsa1266 b.29.1.2 (A:19-284) GlcNAc-alpha-1,4-Gal-releasing 3e-04
d1o4za_295 b.29.1.2 (A:) beta-Agarase A {Zobellia galactanivo 0.003
>d1umza_ b.29.1.2 (A:) Xyloglucan endotransglycosylase {European aspen (Populus tremula) [TaxId: 113636]} Length = 267 Back     information, alignment and structure

class: All beta proteins
fold: Concanavalin A-like lectins/glucanases
superfamily: Concanavalin A-like lectins/glucanases
family: Glycosyl hydrolases family 16
domain: Xyloglucan endotransglycosylase
species: European aspen (Populus tremula) [TaxId: 113636]

 Score =  241 bits (617), Expect = 2e-81
 Identities = 119/211 (56%), Positives = 150/211 (71%), Gaps = 2/211 (0%)

Query: 1   MQLKLVPNNSAGTVTAYYLKSPGASWDEIDFEFLGNLSGNPYIVHTNVYTQGKGDREQQF 60
           MQ+KLVP +SAGTVTA+YL S  +  DEIDFEFLGN +G PYI+ TNV+T GKGDREQ+ 
Sbjct: 53  MQMKLVPGDSAGTVTAFYLSSQNSEHDEIDFEFLGNRTGQPYILQTNVFTGGKGDREQRI 112

Query: 61  YLWFDLTADFHTYSILWNPGHIVFYIDGRPIREFKNLESFGIPYPKKQSMRMYASLWNAD 120
           YLWFD T +FH YS+LWN   IVF +D  PIR FKN +  G+ +P  Q M++Y+SLWNAD
Sbjct: 113 YLWFDPTKEFHYYSVLWNMYMIVFLVDDVPIRVFKNCKDLGVKFPFNQPMKIYSSLWNAD 172

Query: 121 DWATRGGLAKTDWSQAPFTASFRNFNAKACVWSIGISSCSLNPT-TKNTWFSQELDSSSQ 179
           DWATRGGL KTDWS+APF AS+R+F+   C  S+    C+       +    Q+LD+   
Sbjct: 173 DWATRGGLEKTDWSKAPFIASYRSFHIDGCEASVEAKFCATQGARWWDQKEFQDLDAFQY 232

Query: 180 RKLKWVQQNYMVYNYCTDTSRFPQGLPQECT 210
           R+L WV+Q Y +YNYCTD SR+P  +P EC 
Sbjct: 233 RRLSWVRQKYTIYNYCTDRSRYP-SMPPECK 262
>d1ajka_ b.29.1.2 (A:) Bacillus 1-3,1-4-beta-glucanase {Bacillus macerans [TaxId: 44252]} Length = 214 Back     information, alignment and structure
>d1mvea_ b.29.1.2 (A:) Bacillus 1-3,1-4-beta-glucanase {Fibrobacter succinogenes [TaxId: 833]} Length = 243 Back     information, alignment and structure
>d2ayha_ b.29.1.2 (A:) Bacillus 1-3,1-4-beta-glucanase {synthetic, hybrid between Bacillus amyloliquefaciens and Bacillus macerans proteins} Length = 214 Back     information, alignment and structure
>d1dypa_ b.29.1.2 (A:) kappa-Carrageenase, catalytic {Pseudoalteromonas carrageenovora [TaxId: 227]} Length = 271 Back     information, alignment and structure
>d1o4ya_ b.29.1.2 (A:) beta-Agarase A {Zobellia galactanivorans [TaxId: 63186]} Length = 270 Back     information, alignment and structure
>d1upsa1 b.29.1.2 (A:19-284) GlcNAc-alpha-1,4-Gal-releasing endo-beta-galactosidase, GngC, catalytic domain {Clostridium perfringens [TaxId: 1502]} Length = 266 Back     information, alignment and structure
>d1o4za_ b.29.1.2 (A:) beta-Agarase A {Zobellia galactanivorans [TaxId: 63186]} Length = 295 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query213
d1umza_267 Xyloglucan endotransglycosylase {European aspen (P 100.0
d1ajka_214 Bacillus 1-3,1-4-beta-glucanase {Bacillus macerans 100.0
d1mvea_243 Bacillus 1-3,1-4-beta-glucanase {Fibrobacter succi 99.97
d2ayha_214 Bacillus 1-3,1-4-beta-glucanase {synthetic, hybrid 99.96
d1upsa1266 GlcNAc-alpha-1,4-Gal-releasing endo-beta-galactosi 99.95
d1o4ya_270 beta-Agarase A {Zobellia galactanivorans [TaxId: 6 99.94
d1o4za_295 beta-Agarase A {Zobellia galactanivorans [TaxId: 6 99.93
d1dypa_271 kappa-Carrageenase, catalytic {Pseudoalteromonas c 99.93
d1epwa1218 Botulinum neurotoxin {Clostridium botulinum, serot 95.04
d1b09a_206 C-reactive protein (CRP) {Human (Homo sapiens) [Ta 94.24
d1oq1a_223 Hypothetical protein YesU {Bacillus subtilis [TaxI 93.3
d1a8da1247 Tetanus neurotoxin {Clostridium tetani [TaxId: 151 93.24
d1saca_204 Serum amyloid P component (SAP) {Human (Homo sapie 92.77
d2erfa1206 Thrombospondin 1 N-terminal domain {Human (Homo sa 92.18
d3btaa1207 Botulinum neurotoxin {Clostridium botulinum, serot 92.12
d1w0pa2197 Vibrio cholerae sialidase, N-terminal and insertio 89.42
d1w0pa1192 Vibrio cholerae sialidase, N-terminal and insertio 89.17
d2slia1196 Leech intramolecular trans-sialidase, N-terminal d 88.22
d2r1da1177 Ligand-binding domain of neurexin 1beta {Rat (Ratt 84.36
>d1umza_ b.29.1.2 (A:) Xyloglucan endotransglycosylase {European aspen (Populus tremula) [TaxId: 113636]} Back     information, alignment and structure
class: All beta proteins
fold: Concanavalin A-like lectins/glucanases
superfamily: Concanavalin A-like lectins/glucanases
family: Glycosyl hydrolases family 16
domain: Xyloglucan endotransglycosylase
species: European aspen (Populus tremula) [TaxId: 113636]

Probab=100.00  E-value=1.1e-69  Score=468.90  Aligned_cols=208  Identities=58%  Similarity=1.107  Sum_probs=194.1

Q ss_pred             CEEEeeCCCCCceEeeeEEecCCCCCCeeEEEEcCCCCCCceEEEeeEEeCCCCCceeeEEecCCCCCCcEEEEEEEeCC
Q 028152            1 MQLKLVPNNSAGTVTAYYLKSPGASWDEIDFEFLGNLSGNPYIVHTNVYTQGKGDREQQFYLWFDLTADFHTYSILWNPG   80 (213)
Q Consensus         1 ~riKlp~g~s~G~~~AFwl~~~~~~~~EIDiE~lG~~~g~p~~~~tn~~~~g~g~r~~~~~l~fd~~~dfHtY~i~W~p~   80 (213)
                      ||||||+|+++|++++|||+++++.++|||||++|+..++++++|||+|.+|.+++++++.++||++++||+|+|+|+|+
T Consensus        53 ariKlp~G~g~g~~~~f~~~s~~~~~dEIDiE~lG~~~~~~~~v~tn~~~~g~g~~~~~~~~~~d~s~dFHtY~i~Wtp~  132 (267)
T d1umza_          53 MQMKLVPGDSAGTVTAFYLSSQNSEHDEIDFEFLGNRTGQPYILQTNVFTGGKGDREQRIYLWFDPTKEFHYYSVLWNMY  132 (267)
T ss_dssp             EEEECCCSCCTTEEEEEEEECSSSSCCEEEEEEECCSTTSCCEEEEEEEBTTBCCCCEEECCSSCTTTSCEEEEEEECSS
T ss_pred             EEEEcCCCCccEEEEEeeecCCCCCCCeEEEEEecccCCcccEEEeeEeCCCCCCcceeEecCCCCccCcEEEEEEECcc
Confidence            69999999889999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             eEEEEEcCeEEEEEeccccCCcCCCCCCceeEEEEeeeCCCcccCCCccccCCCCCCeEEEEeEEEEEEEEeCCCCCCCC
Q 028152           81 HIVFYIDGRPIREFKNLESFGIPYPKKQSMRMYASLWNADDWATRGGLAKTDWSQAPFTASFRNFNAKACVWSIGISSCS  160 (213)
Q Consensus        81 ~I~fyVDg~~vr~~~~~~~~g~~~P~~~Pm~l~lnlw~gg~Wat~GG~~~~d~~~~Pf~~~~~~~~v~~c~~~~~~~~c~  160 (213)
                      +|+|||||++||++++.+..+.+||+++||+|++|||+||+|||+||++|+||+.+||+|.|++|+|++|.++...+.|.
T Consensus       133 ~I~fyVDG~~vr~~~n~~~~g~~~p~~~pm~i~~niW~g~~Wat~gG~~~~d~~~aPf~a~~~~~~v~~c~~~~~~~~~~  212 (267)
T d1umza_         133 MIVFLVDDVPIRVFKNCKDLGVKFPFNQPMKIYSSLWNADDWATRGGLEKTDWSKAPFIASYRSFHIDGCEASVEAKFCA  212 (267)
T ss_dssp             EEEEEETTEEEEEEECCGGGTCCCSCSSCBEEEEEEEECTTTSSGGGTSCCCGGGCCEEEEEEEEEEEEEECCSSSCCCT
T ss_pred             eEEEEECCEEEEEEeccccCCCCCCcceEEEEEEeeeeCCCccccCCeeeecCCCCCEEEEEEEEEEEecccCCCCcccC
Confidence            99999999999999998888899998899999999999999999999999999999999999999999999876666665


Q ss_pred             CCCCCCCCcccc----CCCHHHHHHHHHHhhcCeEeecccCCCCCCCCCCCCCcCC
Q 028152          161 LNPTTKNTWFSQ----ELDSSSQRKLKWVQQNYMVYNYCTDTSRFPQGLPQECTNK  212 (213)
Q Consensus       161 ~~~~~~~~w~~~----~l~~~~~~~~~~~~~~~~~YdYC~d~~r~~~~~p~eC~~~  212 (213)
                      .   +...||++    +|+.+|+++|+|||+||||||||+|++|||. +||||+++
T Consensus       213 ~---~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~y~yC~d~~r~~~-~p~EC~~~  264 (267)
T d1umza_         213 T---QGARWWDQKEFQDLDAFQYRRLSWVRQKYTIYNYCTDRSRYPS-MPPECKRD  264 (267)
T ss_dssp             T---TTCSGGGSGGGSSCCHHHHHHHHHHHHHTEEEEGGGCTTTCSS-CCTHHHHH
T ss_pred             C---CCCccccccccccCCHHHHHHHHHHHHCCcEEccCCCCCcCCC-CCcccCCC
Confidence            3   23467773    7999999999999999999999999999996 89999753
>d1ajka_ b.29.1.2 (A:) Bacillus 1-3,1-4-beta-glucanase {Bacillus macerans [TaxId: 44252]} Back     information, alignment and structure
>d1mvea_ b.29.1.2 (A:) Bacillus 1-3,1-4-beta-glucanase {Fibrobacter succinogenes [TaxId: 833]} Back     information, alignment and structure
>d2ayha_ b.29.1.2 (A:) Bacillus 1-3,1-4-beta-glucanase {synthetic, hybrid between Bacillus amyloliquefaciens and Bacillus macerans proteins} Back     information, alignment and structure
>d1upsa1 b.29.1.2 (A:19-284) GlcNAc-alpha-1,4-Gal-releasing endo-beta-galactosidase, GngC, catalytic domain {Clostridium perfringens [TaxId: 1502]} Back     information, alignment and structure
>d1o4ya_ b.29.1.2 (A:) beta-Agarase A {Zobellia galactanivorans [TaxId: 63186]} Back     information, alignment and structure
>d1o4za_ b.29.1.2 (A:) beta-Agarase A {Zobellia galactanivorans [TaxId: 63186]} Back     information, alignment and structure
>d1dypa_ b.29.1.2 (A:) kappa-Carrageenase, catalytic {Pseudoalteromonas carrageenovora [TaxId: 227]} Back     information, alignment and structure
>d1epwa1 b.29.1.6 (A:862-1079) Botulinum neurotoxin {Clostridium botulinum, serotype B [TaxId: 1491]} Back     information, alignment and structure
>d1b09a_ b.29.1.5 (A:) C-reactive protein (CRP) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1oq1a_ b.29.1.17 (A:) Hypothetical protein YesU {Bacillus subtilis [TaxId: 1423]} Back     information, alignment and structure
>d1a8da1 b.29.1.6 (A:1-247) Tetanus neurotoxin {Clostridium tetani [TaxId: 1513]} Back     information, alignment and structure
>d1saca_ b.29.1.5 (A:) Serum amyloid P component (SAP) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2erfa1 b.29.1.4 (A:10-215) Thrombospondin 1 N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d3btaa1 b.29.1.6 (A:872-1078) Botulinum neurotoxin {Clostridium botulinum, serotype A [TaxId: 1491]} Back     information, alignment and structure
>d1w0pa2 b.29.1.8 (A:347-543) Vibrio cholerae sialidase, N-terminal and insertion domains {Vibrio cholerae [TaxId: 666]} Back     information, alignment and structure
>d1w0pa1 b.29.1.8 (A:25-216) Vibrio cholerae sialidase, N-terminal and insertion domains {Vibrio cholerae [TaxId: 666]} Back     information, alignment and structure
>d2slia1 b.29.1.9 (A:81-276) Leech intramolecular trans-sialidase, N-terminal domain {North american leech (Macrobdella decora) [TaxId: 6405]} Back     information, alignment and structure
>d2r1da1 b.29.1.4 (A:36-212) Ligand-binding domain of neurexin 1beta {Rat (Rattus norvegicus) [TaxId: 10116]} Back     information, alignment and structure