Citrus Sinensis ID: 028159

---

Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210--
Protein Sequence
MNSVTSASPPTTTLCSSIQSKTQASFFGNSLSSVPVIPRTLTCSSNLKLNGLGFFGGAKSPRRIPLQCNSTTKPGPPSGSGDGESRTVLDAFFLGKAVAEALNERIESAVGEFLSTVGRLQAEQQKQVQEFQEDVLERAKKAKEKAAREAMEVRGLVPKSRTVNATPVSAATSASPSTTNNVTPASPSEPITPDAETDPNPGDQGSRFRGVR
Secondary Structure (PSIPRED)
ccccccccccccEEEccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccEEEEcccccccccccccccccccccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
cccccccccccEEEEEEEcccccccccccccccccccccccccccccEEcccccccccccccEEEEEEEcccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccEEEEEEcccccccccccccccccccccccccccccccccccccccc
Coil and Loop (DISEMBL)
mnsvtsaspptttlcssiqsktqasffgnslssvpviprtltcssnlklnglgffggaksprriplqcnsttkpgppsgsgdgesrtVLDAFFLGKAVAEALNERIESAVGEFLSTVGRLQAEQQKQVQEFQEDVLERAKKAKEKAAREAMEVrglvpksrtvnatpvsaatsaspsttnnvtpaspsepitpdaetdpnpgdqgsrfrgvr
Flexible Loop (DISEMBL)
mnsvtsasppttTLCSSIQSKTQASFFGNSLSSVPVIPRTLTCSSNLKLNGLGFFGGAKSPRRIPLQCnsttkpgppsgsgdgESRTVLDAFFLGKAVAEALNERIESAVGEFLSTVGRLQAEQQKQVQEFQEDVLERAKKAKEKAAReamevrglvpksrtvnatpvsaatsaspsttnnvtpaspsepitpdaetdpnpgdqgsrfrgvr
Low Complexity Region (SEG)
MNSVTSASPPTTTLCSSIQSKTQASFFGNSLSSVPVIPRTLTCSSnlklnglgffggAKSPRRIPLQCNSTTKpgppsgsgdgesRTVLDAFFLGKAVAEALNERIESAVGEFLSTVGRLqaeqqkqvqefqeDVLerakkakekaareaMEVRGLVPKSRtvnatpvsaatsaspsttnnvtpASPSEPITPDAETDPNPGDQGSRFRGVR
Disordered region (IsUnstruct)
*************************FFGNSLSSVPVIPRTLTCSSNLKLNGLGFFGGA****************************TVLDAFFLGKAVAEALNERIESAVGEFLSTVG**********************************************************************************************
Disordered Region (DISOPRED)
************TLCSSIQSKTQASFFG**************************************************************AFFLGKAVAEALNERIESAVGEFLSTVGRLQAEQQKQVQEFQED******************************************************************************
Disordered Region (DISEMBL)
****************SIQSKTQASFFGNSLSSVPVIPRTLTCSSNLKLNGLGFFGGAKSPRRIPLQCNS*************ESRTVLDAFFLGKAVAEALNERIESAVGEFLSTVGRLQAEQQKQVQEFQEDVLER**************VRGLVPKSRTVNA***********************************************
Disordered Region (DISPRO)
*******SPPTTTLCSSIQSKTQASFFGNSLSSVPVIPRTLTCSSNLKLNGLGFFGGAKSPRRIPLQCNSTT************SRTVLDAFFLGKAVAEALNERIESAVGEFLSTVGRLQAEQQKQVQEFQEDVLERAKKAKE********************************************************************
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MNSVTSASPPTTTLCSSIQSKTQASFFGNSLSSVPVIPRTLTCSSNLKLNGLGFFGGAKSPRRIPLQCNSTTKPGPPSGSGDGESRTVLDAFFLGKAVAEALNERIESAVGEFLSTVGRLQAEQQKQVxxxxxxxxxxxxxxxxxxxxxxxxxxxxVPKSRTVNATPVSAATSASPSTTNNVTPASPSEPITPDAETDPNPGDQGSRFRGVR
Positional Conservation
no confident homologs detected

---

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	212	2.2.26 [Sep-21-2011]
Q8LDV3	185	Uncharacterized protein A	yes	no	0.5	0.572	0.623	3e-29
P73628	105	Probable thylakoid lumen	N/A	no	0.245	0.495	0.461	5e-05

>sp|Q8LDV3|Y4320_ARATH Uncharacterized protein At4g13200, chloroplastic OS=Arabidopsis thaliana GN=At4g13200 PE=1 SV=2

 Score =  128 bits (321), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 68/109 (62%), Positives = 83/109 (76%), Gaps = 3/109 (2%)

Query: 78  SGSGDGESRTVLDAFFLGKAVAEALNERIESAVGEFLSTVGRLQAEQQKQVQEFQEDVLE 137
           + SG+ E+++VLDAFFLGKA+AE +NERIES VGE LST+G+ QAEQQKQVQE QE+VLE
Sbjct: 62  TDSGENENKSVLDAFFLGKALAEVINERIESTVGEVLSTIGKFQAEQQKQVQEIQEEVLE 121

Query: 138 RAKKAKEKAAREAMEVRGLV---PKSRTVNATPVSAATSASPSTTNNVT 183
           RAKKAKE+AARE ME +GLV   P + T N   V  A+  S ST  + T
Sbjct: 122 RAKKAKERAARETMEEQGLVASKPVAITRNPDAVVVASVTSTSTVESKT 170

Arabidopsis thaliana (taxid: 3702)

>sp|P73628|Y1769_SYNY3 Probable thylakoid lumen protein sll1769 OS=Synechocystis sp. (strain PCC 6803 / Kazusa) GN=sll1769 PE=4 SV=1

 Score = 48.1 bits (113), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 24/52 (46%), Positives = 36/52 (69%)

Query: 88  VLDAFFLGKAVAEALNERIESAVGEFLSTVGRLQAEQQKQVQEFQEDVLERA 139
           VL AFFLG+A AE L+E++E  V   LS +G+  AEQ++ +++F  +V  RA
Sbjct: 5   VLQAFFLGRAFAEVLSEKVEDGVTNALSELGKFDAEQRENLRQFIAEVQSRA 56

Synechocystis sp. (strain PCC 6803 / Kazusa) (taxid: 1111708)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	212
225464240	195	PREDICTED: uncharacterized protein At4g1	0.693	0.753	0.580	1e-37
224065328	209	predicted protein [Populus trichocarpa]	0.825	0.837	0.515	4e-35
255560187	215	conserved hypothetical protein [Ricinus	0.721	0.711	0.588	2e-34
356504270	196	PREDICTED: uncharacterized protein LOC10	0.632	0.683	0.595	4e-34
356567754	193	PREDICTED: uncharacterized protein At4g1	0.551	0.606	0.658	2e-33
21553912	185	unknown [Arabidopsis thaliana]	0.575	0.659	0.549	9e-28
297790552	181	hypothetical protein ARALYDRAFT_497076 [	0.547	0.640	0.595	1e-27
15235625	185	uncharacterized protein [Arabidopsis tha	0.5	0.572	0.623	2e-27
326488581	162	predicted protein [Hordeum vulgare subsp	0.485	0.635	0.566	2e-22
242073692	154	hypothetical protein SORBIDRAFT_06g02238	0.457	0.629	0.572	2e-21

>gi|225464240|ref|XP_002267372.1| PREDICTED: uncharacterized protein At4g13200, chloroplastic [Vitis vinifera] gi|297744310|emb|CBI37280.3| unnamed protein product [Vitis vinifera]

 Score =  161 bits (408), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 94/162 (58%), Positives = 113/162 (69%), Gaps = 15/162 (9%)

Query: 3   SVTSASPPTTTLCSSIQSKTQASFFGNSLSSVPVIPRTLTCSSNLKLN--GLGFFGGAKS 60
           S  SASPP T      + KT++      LS              L+ N  G+G  GG   
Sbjct: 2   SGVSASPPPTFFSLEGRPKTRSFCCHQPLSH-----------RKLRFNSLGIGCRGGGLQ 50

Query: 61  PRRIPLQCNSTTKPGPPSGSGDGESRTVLDAFFLGKAVAEALNERIESAVGEFLSTVGRL 120
             R+ +QCNS+T P PP GSGD +SR++LDAFFLGKA+AEALNERIES VGEFLS VGRL
Sbjct: 51  RDRV-VQCNSSTNP-PPPGSGDSDSRSILDAFFLGKALAEALNERIESTVGEFLSVVGRL 108

Query: 121 QAEQQKQVQEFQEDVLERAKKAKEKAAREAMEVRGLVPKSRT 162
           QAEQQKQVQ+FQ++VLERAK+AKEKAAREA+E +GL+PKS T
Sbjct: 109 QAEQQKQVQDFQDEVLERAKRAKEKAAREALEAQGLIPKSTT 150

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224065328|ref|XP_002301776.1| predicted protein [Populus trichocarpa] gi|118484006|gb|ABK93890.1| unknown [Populus trichocarpa] gi|222843502|gb|EEE81049.1| predicted protein [Populus trichocarpa]

 Score =  153 bits (387), Expect = 4e-35,   Method: Compositional matrix adjust.
 Identities = 102/198 (51%), Positives = 130/198 (65%), Gaps = 23/198 (11%)

Query: 14  LCSSIQSKTQASFFGNSLSSVPVIPRTLTCSSNLKLN---GLGFFGGAKSPRRIPLQCNS 70
           L S IQ+K + SF    L    +   + + SS++KL    GL F    +   +I ++C+S
Sbjct: 20  LQSKIQTKQELSFVNPPL----ISRSSSSSSSHIKLKTHLGLRFETALRGCHKINVRCSS 75

Query: 71  TTKPGPPSGSG-DGESRTVLDAFFLGKAVAEALNERIESAVGEFLSTVGRLQAEQQKQVQ 129
           ++ PG P  +  D +SR+VLDAFFLGKAVAEALNER+ESAVGEFLST+GRLQAEQQKQ+Q
Sbjct: 76  SSGPGGPGSASGDSDSRSVLDAFFLGKAVAEALNERVESAVGEFLSTIGRLQAEQQKQIQ 135

Query: 130 EFQEDVLERAKKAKEKAAREAMEVRGLVPKSRTVNATPVSAATSA--SPSTTNNVTPASP 187
           +FQEDVL RAKKAKE+AAREAME +G++PK  TV  T V+   S   SPST N V     
Sbjct: 136 DFQEDVLGRAKKAKEQAAREAMEGQGIIPKPTTVETTSVNQGVSQTPSPSTANAV----- 190

Query: 188 SEPITPDAETDPNPGDQG 205
                   +TD NP  +G
Sbjct: 191 --------KTDSNPATKG 200

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255560187|ref|XP_002521111.1| conserved hypothetical protein [Ricinus communis] gi|223539680|gb|EEF41262.1| conserved hypothetical protein [Ricinus communis]

 Score =  150 bits (380), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 93/158 (58%), Positives = 109/158 (68%), Gaps = 5/158 (3%)

Query: 8   SPPTTTLCSSIQSKTQASFFGNSLSSVPVIPRTLTCSSNLKLNGLGFFGGAKSPRRIPLQ 67
           SPP  +  SSI+S  Q + F  +LS V      L    NL     GF         I L+
Sbjct: 7   SPPFISF-SSIKSNNQTTNFSCALSPVTNGFSDLKLKKNL---AFGFRNETTQSHTINLR 62

Query: 68  CNSTTKPGPPSGSGDGESRTVLDAFFLGKAVAEALNERIESAVGEFLSTVGRLQAEQQKQ 127
           CNSTT PG P    D ESR+VLDAFFLGKA+AEA+NER+ESAVGEFLST+GRLQAEQQ+Q
Sbjct: 63  CNSTTGPGGPGSG-DNESRSVLDAFFLGKALAEAVNERVESAVGEFLSTIGRLQAEQQRQ 121

Query: 128 VQEFQEDVLERAKKAKEKAAREAMEVRGLVPKSRTVNA 165
           +Q+FQEDVLERA+KAKE AA EAME +GLV K  TV+A
Sbjct: 122 IQDFQEDVLERARKAKENAAWEAMEAQGLVSKPSTVDA 159

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356504270|ref|XP_003520920.1| PREDICTED: uncharacterized protein LOC100800588 [Glycine max]

 Score =  150 bits (378), Expect = 4e-34,   Method: Compositional matrix adjust.
 Identities = 84/141 (59%), Positives = 99/141 (70%), Gaps = 7/141 (4%)

Query: 66  LQCNSTTKPGPPSGSGDGES--RTVLDAFFLGKAVAEALNERIESAVGEFLSTVGRLQAE 123
           L+CN +  PG P GSGD +S  R++LDAFFLGKAVAEALNERIES VGE LSTVGRLQAE
Sbjct: 51  LRCNCSIWPGGP-GSGDSDSSNRSILDAFFLGKAVAEALNERIESTVGEILSTVGRLQAE 109

Query: 124 QQKQVQEFQEDVLERAKKAKEKAAREAMEVRGLVPKSRTVNATPVSAATSASPSTTNNVT 183
           QQKQVQ+FQE+VLERAKK+KE AAREAME +G + KS    A       S +  T+N+ T
Sbjct: 110 QQKQVQDFQEEVLERAKKSKENAAREAMEAQGFISKS----AVETKVTDSTTSKTSNSAT 165

Query: 184 PASPSEPITPDAETDPNPGDQ 204
               S   T  +ETD  P  +
Sbjct: 166 GPVTSVQSTDASETDSEPAKE 186

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356567754|ref|XP_003552081.1| PREDICTED: uncharacterized protein At4g13200, chloroplastic-like [Glycine max]

 Score =  147 bits (372), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 79/120 (65%), Positives = 92/120 (76%), Gaps = 3/120 (2%)

Query: 66  LQCNSTTKPGPPSGSGDGES--RTVLDAFFLGKAVAEALNERIESAVGEFLSTVGRLQAE 123
           L+C  +  PG P GSGD +S  R+VLDAFFLGKAVAEALNERIES VGE LSTVGRLQAE
Sbjct: 47  LRCKCSIWPGGP-GSGDSDSSNRSVLDAFFLGKAVAEALNERIESTVGEILSTVGRLQAE 105

Query: 124 QQKQVQEFQEDVLERAKKAKEKAAREAMEVRGLVPKSRTVNATPVSAATSASPSTTNNVT 183
           QQKQVQ+FQE+VLERAKK+KEK+AR+AME +GL+ KS        S  +    S+TN VT
Sbjct: 106 QQKQVQDFQEEVLERAKKSKEKSARQAMEAQGLISKSGVETKVLYSITSDTLNSSTNPVT 165

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|21553912|gb|AAM62995.1| unknown [Arabidopsis thaliana]

 Score =  129 bits (323), Expect = 9e-28,   Method: Compositional matrix adjust.
 Identities = 72/131 (54%), Positives = 90/131 (68%), Gaps = 9/131 (6%)

Query: 62  RRIPLQCNSTTKPGPPSGSGDGESRTVLDAFFLGKAVAEALNERIESAVGEFLSTVGRLQ 121
           R   L+ N +TK    + SG+ E+++VLDAFFLGKA+AE +NERIES VGE LST+G+ Q
Sbjct: 49  RSTYLRSNCSTKG---TDSGENENKSVLDAFFLGKALAEVINERIESTVGEVLSTIGKFQ 105

Query: 122 AEQQKQVQEFQEDVLERAKKAKEKAAREAMEVRGLVPKSRTVNATPVSAATSASPSTTNN 181
           AEQQKQVQE QE+VLERAKKAKE+AARE ME +GLV       + PV+   +       +
Sbjct: 106 AEQQKQVQEIQEEVLERAKKAKERAARETMEEQGLVA------SKPVAITRNPDAFVVTS 159

Query: 182 VTPASPSEPIT 192
           VTP S  E  T
Sbjct: 160 VTPTSTVESKT 170

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297790552|ref|XP_002863161.1| hypothetical protein ARALYDRAFT_497076 [Arabidopsis lyrata subsp. lyrata] gi|297308995|gb|EFH39420.1| hypothetical protein ARALYDRAFT_497076 [Arabidopsis lyrata subsp. lyrata]

 Score =  129 bits (323), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 72/121 (59%), Positives = 88/121 (72%), Gaps = 5/121 (4%)

Query: 62  RRIPLQCNSTTKPGPPSGSGDGESRTVLDAFFLGKAVAEALNERIESAVGEFLSTVGRLQ 121
           R   L+C++ T     S SG+ E+R+VLDAFFLGKA+AE +NERIES VGE L T+G+ Q
Sbjct: 47  RSTSLRCSNGTHG---SDSGENENRSVLDAFFLGKALAEVINERIESTVGEVLGTIGKFQ 103

Query: 122 AEQQKQVQEFQEDVLERAKKAKEKAAREAMEVRGLVP-KSRTVNATP-VSAATSASPSTT 179
           AEQQKQVQE QE+VLERAKKAKE+AARE  E +GLV  KS  +   P  S  TS +P+ T
Sbjct: 104 AEQQKQVQEIQEEVLERAKKAKERAARETKEEQGLVASKSAAITRNPAASVVTSVTPTPT 163

Query: 180 N 180
           N
Sbjct: 164 N 164

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|15235625|ref|NP_193056.1| uncharacterized protein [Arabidopsis thaliana] gi|147742899|sp|Q8LDV3.2|Y4320_ARATH RecName: Full=Uncharacterized protein At4g13200, chloroplastic; Flags: Precursor gi|4753654|emb|CAB41930.1| putative protein [Arabidopsis thaliana] gi|7268022|emb|CAB78362.1| putative protein [Arabidopsis thaliana] gi|17380654|gb|AAL36157.1| unknown protein [Arabidopsis thaliana] gi|21436277|gb|AAM51277.1| unknown protein [Arabidopsis thaliana] gi|332657844|gb|AEE83244.1| uncharacterized protein [Arabidopsis thaliana]

 Score =  128 bits (321), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 68/109 (62%), Positives = 83/109 (76%), Gaps = 3/109 (2%)

Query: 78  SGSGDGESRTVLDAFFLGKAVAEALNERIESAVGEFLSTVGRLQAEQQKQVQEFQEDVLE 137
           + SG+ E+++VLDAFFLGKA+AE +NERIES VGE LST+G+ QAEQQKQVQE QE+VLE
Sbjct: 62  TDSGENENKSVLDAFFLGKALAEVINERIESTVGEVLSTIGKFQAEQQKQVQEIQEEVLE 121

Query: 138 RAKKAKEKAAREAMEVRGLV---PKSRTVNATPVSAATSASPSTTNNVT 183
           RAKKAKE+AARE ME +GLV   P + T N   V  A+  S ST  + T
Sbjct: 122 RAKKAKERAARETMEEQGLVASKPVAITRNPDAVVVASVTSTSTVESKT 170

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|326488581|dbj|BAJ93959.1| predicted protein [Hordeum vulgare subsp. vulgare] gi|326512016|dbj|BAJ95989.1| predicted protein [Hordeum vulgare subsp. vulgare]

 Score =  111 bits (277), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 68/120 (56%), Positives = 81/120 (67%), Gaps = 17/120 (14%)

Query: 76  PPSGSGDGESRTVLDAFFLGKAVAEALNERIESAVGEFLSTVGRLQAEQQKQVQEFQEDV 135
           P   +GD ES+ VLDAFFLGKA+AEAL ER ES VGE  S VG+ QAEQQKQVQEFQE+V
Sbjct: 54  PEPKAGDDESKAVLDAFFLGKALAEALTERAESVVGEVFSVVGQWQAEQQKQVQEFQEEV 113

Query: 136 LERAKKAKEKAAREAMEVRGLVPKSRTVNATPVSAATSASPSTTNNVTPA--SPSEPITP 193
           ++RA+KAKE+AA E ++ +G  PK            T   PSTT  VTPA  SP+ P  P
Sbjct: 114 VQRAQKAKERAAEEVVDDKG--PK------------TLKGPSTT-IVTPAPTSPTSPTIP 158

Source: Hordeum vulgare subsp. vulgare

Species: Hordeum vulgare

Genus: Hordeum

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|242073692|ref|XP_002446782.1| hypothetical protein SORBIDRAFT_06g022380 [Sorghum bicolor] gi|241937965|gb|EES11110.1| hypothetical protein SORBIDRAFT_06g022380 [Sorghum bicolor]

 Score =  107 bits (268), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 59/103 (57%), Positives = 73/103 (70%), Gaps = 6/103 (5%)

Query: 72  TKPGPPSGSGDGESRTVLDAFFLGKAVAEALNERIESAVGEFLSTVGRLQAEQQKQVQEF 131
           T+P P     D ES+ VLDAFFLGKA AEAL ER+ES VGE  S VG+ QAEQQKQVQEF
Sbjct: 45  TRPEP--KPDDNESKAVLDAFFLGKAFAEALTERVESVVGEVFSVVGQWQAEQQKQVQEF 102

Query: 132 QEDVLERAKKAKEKAAREAMEVRGLV----PKSRTVNATPVSA 170
           QE+V++RA+KAKE+AA E  + +G      P +  V  TP+S+
Sbjct: 103 QEEVVQRAQKAKERAATEVSDDKGTKSLREPSATIVTTTPMSS 145

Source: Sorghum bicolor

Species: Sorghum bicolor

Genus: Sorghum

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	212
TAIR|locus:2119355	185	AT4G13200 "AT4G13200" [Arabido	0.646	0.740	0.331	2.5e-10

TAIR|locus:2119355 AT4G13200 "AT4G13200" [Arabidopsis thaliana (taxid:3702)]

 Score = 146 (56.5 bits), Expect = 2.5e-10, P = 2.5e-10
 Identities = 48/145 (33%), Positives = 64/145 (44%)

Query:    16 SSIQSKTQASF-FGNSLSSVPVIPRTLTC-SSXXXXXXXXXXXXAKSPRR-IPLQCNSTT 72
             SS    + +SF   NS +     P + T  +S             +S RR   L+ N +T
Sbjct:     2 SSFTIPSPSSFSLSNSYNQTS--PHSFTLRNSRSNFEFHRLRLDVESRRRSTSLRSNCST 59

Query:    73 KXXXXXXXXXXXXRTVLDAFFLGKAVAEALNERIESAVGEFLSTVGRLXXXXXXXXXXXX 132
             K            ++VLDAFFLGKA+AE +NERIES VGE LST+G+             
Sbjct:    60 KGTDSGENEN---KSVLDAFFLGKALAEVINERIESTVGEVLSTIGKFQAEQQKQVQEIQ 116

Query:   133 XDVLXXXXXXXXXXXXXXMEVRGLV 157
              +VL              ME +GLV
Sbjct:   117 EEVLERAKKAKERAARETMEEQGLV 141


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.313   0.127   0.358    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      212       138   0.00091  102 3  11 23  0.47    31
                                                     30  0.45    33


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  1
  No. of states in DFA:  505 (54 KB)
  Total size of DFA:  104 KB (2073 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  10.61u 0.16s 10.77t   Elapsed:  00:00:00
  Total cpu time:  10.61u 0.16s 10.77t   Elapsed:  00:00:00
  Start:  Fri May 10 05:18:51 2013   End:  Fri May 10 05:18:51 2013

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

GO:0009507 "chloroplast" evidence=ISM;IDA

GO:0009535 "chloroplast thylakoid membrane" evidence=IDA

GO:0010287 "plastoglobule" evidence=IDA

GO:0009579 "thylakoid" evidence=IDA

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Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

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Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	estExt_fgenesh4_pg.C_LG_II2395	SubName- Full=Putative uncharacterized protein; (210 aa)
		(Populus trichocarpa)
Predicted Functional Partners:
	gw1.II.1221.1	hypothetical protein (155 aa)			•				•		0.508
	gw1.XII.287.1	hypothetical protein (117 aa)			•	•					0.507
	estExt_Genewise1_v1.C_LG_XIV1543	SubName- Full=Putative uncharacterized protein; (151 aa)			•				•		0.507
	gw1.XIV.2732.1	hypothetical protein (109 aa)			•						0.506
	gw1.XIII.1619.1	hypothetical protein (398 aa)			•						0.506
	gw1.IV.3493.1	hypothetical protein (374 aa)			•						0.506
	gw1.I.1529.1	hypothetical protein (221 aa)			•						0.506
	gw1.3375.5.1	annotation not avaliable (74 aa)			•						0.506
	gw1.152.106.1	hypothetical protein (199 aa)			•						0.506
	grail3.0025021301	hypothetical protein (173 aa)			•						0.506

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Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	212
PF01346	124	FKBP_N: Domain amino terminal to FKBP-type peptidy	90.14

>PF01346 FKBP_N: Domain amino terminal to FKBP-type peptidyl-prolyl isomerase; InterPro: IPR000774 Peptidyl-prolyl cis-trans isomerase (PPIase) catalyses the cis-trans isomerisation of proline imidic peptide bonds in oligopeptides [, ]

Probab=90.14  E-value=2.5  Score=31.59  Aligned_cols=64  Identities=20%  Similarity=0.300  Sum_probs=41.3

Q ss_pred             hhhHHHHHhhHHHHHHHHHHHH---------HHHHHHh-hhhccc-cHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028159           86 RTVLDAFFLGKAVAEALNERIE---------SAVGEFL-STVGRL-QAEQQKQVQEFQEDVLERAKKAKEKAARE  149 (212)
Q Consensus        86 npvL~AFFLGRAlAEvL~ERlE---------savtd~L-SevGKf-dAEQre~LrqFqEEV~eRA~reae~aa~e  149 (212)
                      ..---+|.+|..++.-|.....         ..+.|+| ..=.++ +.|-++.|+.|+++++++.+.+.++++.+
T Consensus        21 ~~~k~SYalG~~iG~~l~~~~~~~ld~~~~~~Gi~dal~~~~~~l~~~e~~~~l~~~~~~~~~~~~~~~~~~~~~   95 (124)
T PF01346_consen   21 DEDKLSYALGVQIGQQLKQQGFEQLDIDAFLAGIRDALAGKKPKLSDEEAQEALQAFQQKMQAKQQEKMAKAAEK   95 (124)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHCHCC--HHHHHHHHHHHHCTT--SS-HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHhhhhhccCHHHHHHHHHHHHhcCCcCCCHHHHHHHHHHHHHHHHHHhhcchhhhhhh
Confidence            3334467778777777766543         3677787 444455 45568889999999998886664444433

This alpha helical domain is found at the N terminus of proteins belonging to the FKBP-type peptidyl-prolyl cis-trans isomerase(IPR001179 from INTERPRO) family. Peptidyl-prolyl cis-trans isomerase has been shown to accelerate the refolding of several proteins in vitro [, , ]; the FKPB-type enzymes probably act in the folding of extracytoplasmic proteins.; GO: 0006457 protein folding; PDB: 1FD9_A 2VCD_A 3OE2_A 2UZ5_A 3B09_A 1Q6H_B 1Q6I_B 1Q6U_A.

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Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	212
1q6h_A	224	FKBP-type peptidyl-prolyl CIS-trans isomerase FKP;	85.66
3g3z_A	145	NMB1585, transcriptional regulator, MARR family; t	82.97
1lj9_A	144	Transcriptional regulator SLYA; HTH DNA binding pr	81.76
3kp7_A	151	Transcriptional regulator TCAR; multiple drug resi	80.93
1fd9_A	213	Protein (macrophage infectivity potentiator prote;	80.84
3deu_A	166	Transcriptional regulator SLYA; MARR, WING-helix,	80.16

>1q6h_A FKBP-type peptidyl-prolyl CIS-trans isomerase FKP; chaperone, peptidyl-prolyl isomerase, heat shock protein, FK family; HET: MSE; 1.97A {Escherichia coli} SCOP: d.26.1.1 PDB: 1q6i_A* 1q6u_A

Probab=85.66  E-value=5.6  Score=32.75  Aligned_cols=55  Identities=18%  Similarity=0.331  Sum_probs=38.2

Q ss_pred             HHHHHhhHHHHHHHHHH---------------HHHHHHHHhhhhccc-cHHHHHHHHHHHHHHHHHHHHHH
Q 028159           89 LDAFFLGKAVAEALNER---------------IESAVGEFLSTVGRL-QAEQQKQVQEFQEDVLERAKKAK  143 (212)
Q Consensus        89 L~AFFLGRAlAEvL~ER---------------lEsavtd~LSevGKf-dAEQre~LrqFqEEV~eRA~rea  143 (212)
                      --+|-+|..+++-|..+               +-..|.|+|..=.++ +.|-++.|++|+++++++.+.+.
T Consensus        22 ~~sY~~G~~~g~~~~~~~~~~~~~g~~~d~~~~~~G~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   92 (224)
T 1q6h_A           22 KSAYALGASLGRYMENSLKEQEKLGIKLDKDQLIAGVQDAFADKSKLSDQEIEQTLQAFEARVKSSAQAKM   92 (224)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHTTTCCCCHHHHHHHHHHHHTTCCSSCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHhhhhccccccccCHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence            36888999999888775               333566666653345 45568888999999887765433

>3g3z_A NMB1585, transcriptional regulator, MARR family; transcription factor, structur genomics, oxford protein production facility; 2.10A {Neisseria meningitidis serogroup B}

Probab=82.97  E-value=6.5  Score=27.43  Aligned_cols=48  Identities=19%  Similarity=0.212  Sum_probs=38.9

Q ss_pred             hhHHHHHHHHHHHHHHHHHHhhhhccccHHHHHHHHHHHHHHHHHHHHHHH
Q 028159           94 LGKAVAEALNERIESAVGEFLSTVGRLQAEQQKQVQEFQEDVLERAKKAKE  144 (212)
Q Consensus        94 LGRAlAEvL~ERlEsavtd~LSevGKfdAEQre~LrqFqEEV~eRA~reae  144 (212)
                      -|+++.+.+.+.+......++..   ++.|.++.|.+..+.+....+++.+
T Consensus        94 ~G~~~~~~~~~~~~~~~~~~~~~---l~~~e~~~l~~~l~~l~~~l~~~~~  141 (145)
T 3g3z_A           94 TGKAYAAPLTESAQEFSDKVFAT---FGDKRTTRLFADLDALAEVMEKTIS  141 (145)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHH---HCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHH---cCHHHHHHHHHHHHHHHHHHHHHHH
Confidence            58889999999888888888765   5688999999998888877766543

>1lj9_A Transcriptional regulator SLYA; HTH DNA binding protein, structural genomics, PSI, protein structure initiative; 1.60A {Enterococcus faecalis} SCOP: a.4.5.28

Probab=81.76  E-value=7.8  Score=26.79  Aligned_cols=49  Identities=14%  Similarity=0.095  Sum_probs=39.2

Q ss_pred             hhHHHHHHHHHHHHHHHHHHhhhhccccHHHHHHHHHHHHHHHHHHHHHHHH
Q 028159           94 LGKAVAEALNERIESAVGEFLSTVGRLQAEQQKQVQEFQEDVLERAKKAKEK  145 (212)
Q Consensus        94 LGRAlAEvL~ERlEsavtd~LSevGKfdAEQre~LrqFqEEV~eRA~reae~  145 (212)
                      -|+.+.+.+.+.+...+..++.   .++.|+++.|.++.+.+.+..+...++
T Consensus        92 ~G~~~~~~~~~~~~~~~~~~~~---~l~~~e~~~l~~~l~~l~~~l~~~~~~  140 (144)
T 1lj9_A           92 KGKNVYPIIVRENQHSNQVALQ---GLSEVEISQLADYLVRMRKNVSEDWEF  140 (144)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHTT---TCCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHHHHHHHh---cCCHHHHHHHHHHHHHHHHhHHHHHHh
Confidence            4888888888888888777765   567899999999999988877766443

>3kp7_A Transcriptional regulator TCAR; multiple drug resistance, biofilm, transcription regulation, binding, transcription regulator; 2.30A {Staphylococcus epidermidis RP62A} PDB: 3kp3_A* 3kp4_A* 3kp5_A* 3kp2_A* 3kp6_A

Probab=80.93  E-value=6.9  Score=27.60  Aligned_cols=46  Identities=13%  Similarity=0.165  Sum_probs=38.2

Q ss_pred             hhHHHHHHHHHHHHHHHHHHhhhhccccHHHHHHHHHHHHHHHHHHHHH
Q 028159           94 LGKAVAEALNERIESAVGEFLSTVGRLQAEQQKQVQEFQEDVLERAKKA  142 (212)
Q Consensus        94 LGRAlAEvL~ERlEsavtd~LSevGKfdAEQre~LrqFqEEV~eRA~re  142 (212)
                      -|+.+.+.+.+.+...+.+++..   ++.|.++.+.++.+.+.+..+..
T Consensus       102 ~G~~~~~~~~~~~~~~~~~~~~~---l~~~e~~~l~~~l~~l~~~l~~~  147 (151)
T 3kp7_A          102 KGKKYIKERKAIMSHIASDMTSD---FDSKEIEKVRQVLEIIDYRIQSY  147 (151)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTTTT---SCHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHHHHHHHhc---CCHHHHHHHHHHHHHHHHHHHHH
Confidence            58899999988888888877655   78899999999999988777654

>1fd9_A Protein (macrophage infectivity potentiator prote; FKBP domain, long alpha helix, dimerisation VIA helical INTE isomerase; 2.41A {Legionella pneumophila} SCOP: d.26.1.1 PDB: 2uz5_A 2vcd_A*

Probab=80.84  E-value=12  Score=30.49  Aligned_cols=55  Identities=11%  Similarity=0.302  Sum_probs=39.6

Q ss_pred             HHHHhhHHHHHHHHHH--------HHHHHHHHhhhh-ccc-cHHHHHHHHHHHHHHHHHHHHHHH
Q 028159           90 DAFFLGKAVAEALNER--------IESAVGEFLSTV-GRL-QAEQQKQVQEFQEDVLERAKKAKE  144 (212)
Q Consensus        90 ~AFFLGRAlAEvL~ER--------lEsavtd~LSev-GKf-dAEQre~LrqFqEEV~eRA~reae  144 (212)
                      -+|-+|..+++-|...        +-..|.|+|..= -++ +.|.++.|++|+++++++.+.+.+
T Consensus        14 ~sY~~G~~~g~~l~~~~~~~~~~~~~~G~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   78 (213)
T 1fd9_A           14 LSYSIGADLGKNFKNQGIDVNPEAMAKGMQDAMSGAQLALTEQQMKDVLNKFQKDLMAKRTAEFN   78 (213)
T ss_dssp             HHHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHTCCCSSCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhcCcccCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            5788999999888654        556777777652 234 466788899999998877654433

>3deu_A Transcriptional regulator SLYA; MARR, WING-helix, transcription regulator, activator, DNA-binding, repressor; HET: SAL; 2.30A {Salmonella typhimurium} SCOP: a.4.5.28

Probab=80.16  E-value=6.1  Score=29.02  Aligned_cols=45  Identities=13%  Similarity=0.240  Sum_probs=37.6

Q ss_pred             hhHHHHHHHHHHHHHHHHHHhhhhccccHHHHHHHHHHHHHHHHHHHH
Q 028159           94 LGKAVAEALNERIESAVGEFLSTVGRLQAEQQKQVQEFQEDVLERAKK  141 (212)
Q Consensus        94 LGRAlAEvL~ERlEsavtd~LSevGKfdAEQre~LrqFqEEV~eRA~r  141 (212)
                      -|+.+++.+.+.+...+.+++.   .|+.|.+++|.++.+.+.+..++
T Consensus       117 ~G~~~~~~~~~~~~~~~~~~~~---~l~~~e~~~l~~~L~~l~~~l~~  161 (166)
T 3deu_A          117 KAEPLIAEMEEVIHKTRGEILA---GISSEEIELLIKLIAKLEHNIME  161 (166)
T ss_dssp             GGHHHHHHHHHHHHHHHHHHHT---TCCHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHHHHHHH
Confidence            4899999999888888888776   57889999999999888877654

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Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	212
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	0.004

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 35.2 bits (79), Expect = 0.004
 Identities = 9/39 (23%), Positives = 16/39 (41%), Gaps = 3/39 (7%)

Query: 12  TTLCSSIQSKTQASFFGNSLSSVPVIPRTLTCSSNLKLN 50
             +    Q+  Q     N L   P IP ++    +L++N
Sbjct: 317 AEVPELPQNLKQLHVEYNPLREFPDIPESVE---DLRMN 352

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	212
d1q6ha_	210	Peptidyl-prolyl cis-trans isomerase FkpA {Escheric	90.12
d1fd9a_	204	Macrophage infectivity potentiator protein (MIP) {	84.44

>d1q6ha_ d.26.1.1 (A:) Peptidyl-prolyl cis-trans isomerase FkpA {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a+b)
fold: FKBP-like
superfamily: FKBP-like
family: FKBP immunophilin/proline isomerase
domain: Peptidyl-prolyl cis-trans isomerase FkpA
species: Escherichia coli [TaxId: 562]

Probab=90.12  E-value=1  Score=34.19  Aligned_cols=62  Identities=19%  Similarity=0.284  Sum_probs=40.1

Q ss_pred             HHHHhhHHHHHHHHHH---------------HHHHHHHHhhhh-ccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028159           90 DAFFLGKAVAEALNER---------------IESAVGEFLSTV-GRLQAEQQKQVQEFQEDVLERAKKAKEKAAREAM  151 (212)
Q Consensus        90 ~AFFLGRAlAEvL~ER---------------lEsavtd~LSev-GKfdAEQre~LrqFqEEV~eRA~reae~aa~e~~  151 (212)
                      .+|.+|..+++-|...               +-..+.|+|..= ...+.|.++.|+.|++++++..+.+..++|.+.+
T Consensus         9 ~SYaiG~~iG~~l~~~~~~~~~~g~~ld~~~~~~Gl~Dal~gk~~l~~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~~   86 (210)
T d1q6ha_           9 SAYALGASLGRYMENSLKEQEKLGIKLDKDQLIAGVQDAFADKSKLSDQEIEQTLQAFEARVKSSAQAKMEKDAADNE   86 (210)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHTTTCCCCHHHHHHHHHHHHTTCCSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhhhhhccccccCcCHHHHHHHHHHHHcCCCcCchhHHHHHHHHHHHHHHHHHhhhhHHHHHHhh
Confidence            4677777777766543               334566666522 2245777888999999998777666666555443

>d1fd9a_ d.26.1.1 (A:) Macrophage infectivity potentiator protein (MIP) {Legionella pneumophila [TaxId: 446]}

class: Alpha and beta proteins (a+b)
fold: FKBP-like
superfamily: FKBP-like
family: FKBP immunophilin/proline isomerase
domain: Macrophage infectivity potentiator protein (MIP)
species: Legionella pneumophila [TaxId: 446]

Probab=84.44  E-value=3.5  Score=30.81  Aligned_cols=60  Identities=15%  Similarity=0.315  Sum_probs=39.1

Q ss_pred             HHHhhHHHHHHHHH--------HHHHHHHHHhhh-hcccc-HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028159           91 AFFLGKAVAEALNE--------RIESAVGEFLST-VGRLQ-AEQQKQVQEFQEDVLERAKKAKEKAAREA  150 (212)
Q Consensus        91 AFFLGRAlAEvL~E--------RlEsavtd~LSe-vGKfd-AEQre~LrqFqEEV~eRA~reae~aa~e~  150 (212)
                      +|.+|..+++-|..        .+-..+.|+++. -=+.+ .|-++.++.|+++++++.+.+.++++.+.
T Consensus         7 SYaiG~~iG~~l~~~~~eld~e~~~~Gl~Da~~g~~~~ls~ee~~~~l~~~~~~~~~~~~~~~~~~~~~n   76 (204)
T d1fd9a_           7 SYSIGADLGKNFKNQGIDVNPEAMAKGMQDAMSGAQLALTEQQMKDVLNKFQKDLMAKRTAEFNKKADEN   76 (204)
T ss_dssp             HHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHTCCCSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhhccCccCHHHHHHHHHHHhcCCcccCCHHHHHHHHHHHHHHHHHHHHHhhhhhhhhh
Confidence            67788888888853        344556777763 22444 45567778888888887766655555443