Citrus Sinensis ID: 028160

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210--
MGTPKRRLAVLSSHLLPTGPAPCSSSSGVSASFCAQQRLSHSQESGHENDCVFCKIIRGESPAVKLYEYDTCLCILDTNPLSLGRFRLRLVVVAIISLSSIVVSTKELPFQNEVVAAMCAKVPLISNAIMKATDADSFNLLVNNGAAAGQVIFHTHIHIIPRKAHDCLWTSESLRRRPLKIDQETSQLADQVREKLSNICECSSKGQESSLS
ccccHHHHHHHHHccccccccccccccccccccccccccccccccccccccHHHHHHcccccccEEEEcccEEEEEcccccccccccccEEEEccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHcccccEEEEEEccccccccccEEEEEEEcccccccccccccccccccccHHHHHHHHHHHHHHHHccHHHcccccccccc
cccHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccEEEEEEccccccEEEEEcccEEEEEEccccccccEEEEEEEccHHccHcccccccHccccHHHHHHHHHHHHHHHHHHHHHcccccEEEEEccccccccEEEEEEEEEEEccccccccccEcccccHHHHHHHHHHHHHHHHHHHHcccHccccccccccc
MGTPKRRLAVLSshllptgpapcssssgvsasfCAQQrlshsqesghendcVFCKiirgespavklyeydtclcildtnplslgrFRLRLVVVAIISLSSIVVSTKELPFQNEVVAAMCAKVPLISNAIMKATDADSFNLLVNNGAAAGQVIFHthihiiprkahdclwtseslrrrplkidqETSQLADQVREKLSNicecsskgqessls
MGTPKRRLAVLSSHLLPTGPAPCSSSSGVSASFCAQQRLShsqesghenDCVFCKIIRGESPAVKLYEYDTCLCILDTNPLSLGRFRLRLVVVAIISLSSIVVSTKELPFQNEVVAAMCAKVPLISNAIMKATDADSFNLLVNNGAAAGQVIFHTHIHIIPRKAHDCLWTSESlrrrplkidqetsqLADQVREKLSnicecsskgqessls
MGTPKRRLAVLSSHLLPTGPAPCssssgvsasFCAQQRLSHSQESGHENDCVFCKIIRGESPAVKLYEYDTCLCILDTNPLSLGRFrlrlvvvaiislssivvsTKELPFQNEVVAAMCAKVPLISNAIMKATDADSFNLLVNNGAAAGQVIFHTHIHIIPRKAHDCLWTSESLRRRPLKIDQETSQLADQVREKLSNICECSSKGQESSLS
************************************************NDCVFCKIIRGESPAVKLYEYDTCLCILDTNPLSLGRFRLRLVVVAIISLSSIVVSTKELPFQNEVVAAMCAKVPLISNAIMKATDADSFNLLVNNGAAAGQVIFHTHIHIIPRKAHDCLWTSE****************************************
*****RR***LSSHLLP*********************************CVFCKIIRGESPAVKLYEYDTCLCILDTNPLSLGRFRLRLVVVAIISLSSIVVSTKELPFQNEVVAAMCAKVPLISNAIMKATDADSFNLLVNNGAAAGQVIFHTHIHIIPRKAHDCLWTSESL*****K*DQETSQLADQVR*******************
MGTPKRRLAVLSSHLLPT****************************HENDCVFCKIIRGESPAVKLYEYDTCLCILDTNPLSLGRFRLRLVVVAIISLSSIVVSTKELPFQNEVVAAMCAKVPLISNAIMKATDADSFNLLVNNGAAAGQVIFHTHIHIIPRKAHDCLWTSESLRRRPLKIDQETSQLADQVREKLSNICE***********
*****RR**VLSSHLLPTG**************************GHENDCVFCKIIRGESPAVKLYEYDTCLCILDTNPLSLGRFRLRLVVVAIISLSSIVVSTKELPFQNEVVAAMCAKVPLISNAIMKATDADSFNLLVNNGAAAGQVIFHTHIHIIPRKAHDCLWTSESLRRRPLKIDQETSQLADQVREKLSN**************
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiHHHHHHHHHHHHHHHHHooooooHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
SSSSSSSSSSSSSSSSSSSSSSSSSSoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
MGTPKRRLAVLSSHLLPTGPAPCSSSSGVSASFCAQQRLSHSQESGHENDCVFCKIIRGESPAVKLYEYDTCLCILDTNPLSLGRFRLRLVVVAIISLSSIVVSTKELPFQNEVVAAMCAKVPLISNAIMKATDADSFNLLVNNGAAAGQVIFHTHIHIIPRKAHDCLWTSESLRRRPLKIDQETSQLADQVREKLSNICECSSKGQESSLS
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query212 2.2.26 [Sep-21-2011]
P94252139 Uncharacterized HIT-like yes no 0.594 0.906 0.363 6e-14
O07513145 Protein hit OS=Bacillus s yes no 0.627 0.917 0.292 2e-13
Q11066144 Uncharacterized HIT-like yes no 0.580 0.854 0.340 2e-12
P95937139 Uncharacterized HIT-like yes no 0.5 0.762 0.336 3e-11
P73481114 Uncharacterized HIT-like N/A no 0.448 0.833 0.327 1e-10
Q58276129 Uncharacterized HIT-like yes no 0.481 0.790 0.336 1e-10
O07817107 Protein HitA OS=Neisseria yes no 0.481 0.953 0.330 2e-10
O94586133 Hit family protein 1 OS=S yes no 0.462 0.736 0.321 2e-10
O66536121 Uncharacterized HIT-like yes no 0.5 0.876 0.353 3e-10
P32083111 Uncharacterized 13.1 kDa yes no 0.471 0.900 0.363 4e-09
>sp|P94252|YHIT_BORBU Uncharacterized HIT-like protein BB_0379 OS=Borrelia burgdorferi (strain ATCC 35210 / B31 / CIP 102532 / DSM 4680) GN=BB_0379 PE=4 SV=1 Back     alignment and function desciption
 Score = 77.8 bits (190), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 52/143 (36%), Positives = 73/143 (51%), Gaps = 17/143 (11%)

Query: 50  DCVFCKIIRGESPAVKLYEYDTCLCILDTNPLSLGRFRLRLVVVAIISLSSIVVSTKELP 109
           DC+FCKII  E P+ K+YE D  L  LD NPL++G     LV+    S S + +  K   
Sbjct: 3   DCIFCKIINKELPSYKVYEDDLVLAFLDINPLTVGH---TLVIPKEHSESLLNMDDK--- 56

Query: 110 FQNEVVAAMCAKVPLISNAIMKATDA--DSFNLLVNNGAAAGQVIFHTHIHIIPRKAHDC 167
             NE V  +C K   ISNA+ +   +     N+    GA AGQ +FHTH H+IPR  +D 
Sbjct: 57  -FNERVLKVCKK---ISNALKRINSSIYGGINIYSALGAGAGQEVFHTHFHVIPRFKNDG 112

Query: 168 LWTSESLRRRPLKIDQETSQLAD 190
                   +R  K++ E  +  +
Sbjct: 113 FGF-----KRGNKLNLEVEKFKE 130

Borrelia burgdorferi (strain ATCC 35210 / B31 / CIP 102532 / DSM 4680) (taxid: 224326)
>sp|O07513|HIT_BACSU Protein hit OS=Bacillus subtilis (strain 168) GN=hit PE=1 SV=1 Back     alignment and function description
>sp|Q11066|YHI2_MYCTU Uncharacterized HIT-like protein Rv1262c/MT1300 OS=Mycobacterium tuberculosis GN=Rv1262c PE=4 SV=2 Back     alignment and function description
>sp|P95937|YHIT_SULSO Uncharacterized HIT-like protein SSO2163 OS=Sulfolobus solfataricus (strain ATCC 35092 / DSM 1617 / JCM 11322 / P2) GN=SSO2163 PE=4 SV=1 Back     alignment and function description
>sp|P73481|YHIT_SYNY3 Uncharacterized HIT-like protein slr1234 OS=Synechocystis sp. (strain PCC 6803 / Kazusa) GN=slr1234 PE=4 SV=1 Back     alignment and function description
>sp|Q58276|Y866_METJA Uncharacterized HIT-like protein MJ0866 OS=Methanocaldococcus jannaschii (strain ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC 100440) GN=MJ0866 PE=4 SV=2 Back     alignment and function description
>sp|O07817|HITA_NEIGO Protein HitA OS=Neisseria gonorrhoeae GN=hitA PE=4 SV=1 Back     alignment and function description
>sp|O94586|HNT1_SCHPO Hit family protein 1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=hnt1 PE=3 SV=1 Back     alignment and function description
>sp|O66536|YHIT_AQUAE Uncharacterized HIT-like protein aq_141 OS=Aquifex aeolicus (strain VF5) GN=aq_141 PE=4 SV=1 Back     alignment and function description
>sp|P32083|YHIT_MYCHR Uncharacterized 13.1 kDa HIT-like protein in P37 5'region OS=Mycoplasma hyorhinis PE=4 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query212
255585620214 histidine triad (hit) protein, putative 0.943 0.934 0.575 6e-55
224069894190 predicted protein [Populus trichocarpa] 0.867 0.968 0.584 9e-52
297792041198 histidine triad family protein [Arabidop 0.858 0.919 0.574 9e-52
42573622197 protein histidine triad nucleotide-bindi 0.858 0.923 0.577 2e-51
449458428208 PREDICTED: uncharacterized HIT-like prot 0.929 0.947 0.558 3e-51
356527308207 PREDICTED: uncharacterized HIT-like prot 0.896 0.917 0.538 3e-49
388507958220 unknown [Medicago truncatula] 0.858 0.827 0.535 5e-49
118488050197 unknown [Populus trichocarpa] 0.679 0.730 0.662 1e-48
350537181150 histidine triad family protein [Solanum 0.674 0.953 0.597 2e-39
115487924225 Os12g0233300 [Oryza sativa Japonica Grou 0.825 0.777 0.427 7e-38
>gi|255585620|ref|XP_002533497.1| histidine triad (hit) protein, putative [Ricinus communis] gi|223526641|gb|EEF28884.1| histidine triad (hit) protein, putative [Ricinus communis] Back     alignment and taxonomy information
 Score =  219 bits (558), Expect = 6e-55,   Method: Compositional matrix adjust.
 Identities = 130/226 (57%), Positives = 146/226 (64%), Gaps = 26/226 (11%)

Query: 1   MGTPKRRLAVLSSHLLPTGP------------APCSSSSGVSASFCAQQRLSHS--QESG 46
           M    RRLAVLSSHL P               A  S  S +S S    +RLS    +   
Sbjct: 1   MEKQTRRLAVLSSHLCPIASFSGSGSGSGQDHASLSCYSCISDS--NNERLSSDSIEIEN 58

Query: 47  HENDCVFCKIIRGESPAVKLYEYDTCLCILDTNPLSLGRFRLRLVVVAIISLSSIVVSTK 106
             +DCVFC+IIRGESPA KLYE DTCLCILDT+PLS G         ++I   S   S +
Sbjct: 59  QPHDCVFCRIIRGESPAFKLYEDDTCLCILDTSPLSHGH--------SLIIPKSHYPSLE 110

Query: 107 ELPFQNEVVAAMCAKVPLISNAIMKATDADSFNLLVNNGAAAGQVIFHTHIHIIPRKAHD 166
             P    VVAAMC+KVP I NAIM+AT +DSFNLLVNNGAAAGQVIFHTHIHIIPRK  D
Sbjct: 111 ATP--PSVVAAMCSKVPFIGNAIMRATGSDSFNLLVNNGAAAGQVIFHTHIHIIPRKESD 168

Query: 167 CLWTSESLRRRPLKIDQETSQLADQVREKLSNICECSSKGQESSLS 212
           CLWTSES++RRPL  D   SQL + VRE+LSNI E   KGQESSLS
Sbjct: 169 CLWTSESIQRRPLNFDHRASQLVNLVREQLSNISEDGGKGQESSLS 214

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|224069894|ref|XP_002303075.1| predicted protein [Populus trichocarpa] gi|222844801|gb|EEE82348.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|297792041|ref|XP_002863905.1| histidine triad family protein [Arabidopsis lyrata subsp. lyrata] gi|297309740|gb|EFH40164.1| histidine triad family protein [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information
>gi|42573622|ref|NP_974907.1| protein histidine triad nucleotide-binding 3 [Arabidopsis thaliana] gi|332008302|gb|AED95685.1| protein histidine triad nucleotide-binding 3 [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|449458428|ref|XP_004146949.1| PREDICTED: uncharacterized HIT-like protein Rv1262c/MT1300-like [Cucumis sativus] gi|449526732|ref|XP_004170367.1| PREDICTED: uncharacterized HIT-like protein Rv1262c/MT1300-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|356527308|ref|XP_003532253.1| PREDICTED: uncharacterized HIT-like protein BB_0379-like [Glycine max] Back     alignment and taxonomy information
>gi|388507958|gb|AFK42045.1| unknown [Medicago truncatula] Back     alignment and taxonomy information
>gi|118488050|gb|ABK95845.1| unknown [Populus trichocarpa] Back     alignment and taxonomy information
>gi|350537181|ref|NP_001234539.1| histidine triad family protein [Solanum lycopersicum] gi|51457954|gb|AAU03366.1| histidine triad family protein [Solanum lycopersicum] Back     alignment and taxonomy information
>gi|115487924|ref|NP_001066449.1| Os12g0233300 [Oryza sativa Japonica Group] gi|77554082|gb|ABA96878.1| histidine triad family protein, putative, expressed [Oryza sativa Japonica Group] gi|108862373|gb|ABG21932.1| histidine triad family protein, putative, expressed [Oryza sativa Japonica Group] gi|113648956|dbj|BAF29468.1| Os12g0233300 [Oryza sativa Japonica Group] gi|125578908|gb|EAZ20054.1| hypothetical protein OsJ_35655 [Oryza sativa Japonica Group] gi|215764961|dbj|BAG86658.1| unnamed protein product [Oryza sativa Japonica Group] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query212
TAIR|locus:1006230576197 HINT3 "histidine triad nucleot 0.877 0.944 0.578 5.2e-49
UNIPROTKB|Q71XE9140 LMOf2365_2249 "HIT family prot 0.490 0.742 0.359 1.3e-13
UNIPROTKB|Q2GJL4124 APH_0860 "HIT family protein" 0.141 0.241 0.437 2.5e-12
TIGR_CMR|APH_0860124 APH_0860 "HIT family protein" 0.141 0.241 0.437 2.5e-12
UNIPROTKB|Q81U41144 BAS0978 "HIT family protein" [ 0.636 0.937 0.295 1.3e-11
TIGR_CMR|BA_1047144 BA_1047 "HIT family protein" [ 0.636 0.937 0.295 1.3e-11
UNIPROTKB|G4NDS8137 MGG_00872 "Uncharacterized pro 0.452 0.700 0.342 5.8e-11
ASPGD|ASPL0000013360133 AN3708 [Emericella nidulans (t 0.462 0.736 0.330 1.2e-10
UNIPROTKB|Q5LTM7140 SPO1386 "HIT family protein" [ 0.5 0.757 0.318 5.2e-10
TIGR_CMR|SPO_1386140 SPO_1386 "HIT family protein" 0.5 0.757 0.318 5.2e-10
TAIR|locus:1006230576 HINT3 "histidine triad nucleotide-binding 3" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 511 (184.9 bits), Expect = 5.2e-49, P = 5.2e-49
 Identities = 114/197 (57%), Positives = 126/197 (63%)

Query:     6 RRLAVLSSHLLPTGPAPCXXXXXXXXXFCAQQRLSHSQESGH-ENDCVFCKIIRGESPAV 64
             RRLA+L SHL P GP P            +        ES   +NDCVFCKIIRGESP +
Sbjct:     4 RRLAILCSHLNPPGPNPTRDPTLRVSDCSSGSSGDGKVESSTLQNDCVFCKIIRGESPCL 63

Query:    65 KLYEYDTCLCILDTNPLSLGRFXXXXXXXXXXXXXXXXXXTKELPFQNEVVAAMCAKVPL 124
             KLYE D CLCILDTNPLS G                     +E P    VVAAMC+KVPL
Sbjct:    64 KLYEDDMCLCILDTNPLSHGH--------SLIIPKLHYPTLEETP--PSVVAAMCSKVPL 113

Query:   125 ISNAIMKATDADSFNLLVNNGAAAGQVIFHTHIHIIPRKAHDCLWTSESLRRRPLKIDQE 184
             ISNAI+KAT +DSFNLLVNNGAAAGQVIFHTHIHIIPRK  DCLW SESLRR  LK+D+E
Sbjct:   114 ISNAIVKATGSDSFNLLVNNGAAAGQVIFHTHIHIIPRKERDCLWASESLRRHSLKLDKE 173

Query:   185 TSQLADQVREKLSNICE 201
              SQL   VR  L ++ E
Sbjct:   174 ASQLVSCVRRHLCSLPE 190
GO:0003824 "catalytic activity" evidence=IEA
GO:0005634 "nucleus" evidence=ISM
GO:0005777 "peroxisome" evidence=IDA
GO:0006790 "sulfur compound metabolic process" evidence=IDA
GO:0009150 "purine ribonucleotide metabolic process" evidence=IDA
GO:0047627 "adenylylsulfatase activity" evidence=IDA
UNIPROTKB|Q71XE9 LMOf2365_2249 "HIT family protein" [Listeria monocytogenes serotype 4b str. F2365 (taxid:265669)] Back     alignment and assigned GO terms
UNIPROTKB|Q2GJL4 APH_0860 "HIT family protein" [Anaplasma phagocytophilum HZ (taxid:212042)] Back     alignment and assigned GO terms
TIGR_CMR|APH_0860 APH_0860 "HIT family protein" [Anaplasma phagocytophilum HZ (taxid:212042)] Back     alignment and assigned GO terms
UNIPROTKB|Q81U41 BAS0978 "HIT family protein" [Bacillus anthracis (taxid:1392)] Back     alignment and assigned GO terms
TIGR_CMR|BA_1047 BA_1047 "HIT family protein" [Bacillus anthracis str. Ames (taxid:198094)] Back     alignment and assigned GO terms
UNIPROTKB|G4NDS8 MGG_00872 "Uncharacterized protein" [Magnaporthe oryzae 70-15 (taxid:242507)] Back     alignment and assigned GO terms
ASPGD|ASPL0000013360 AN3708 [Emericella nidulans (taxid:162425)] Back     alignment and assigned GO terms
UNIPROTKB|Q5LTM7 SPO1386 "HIT family protein" [Ruegeria pomeroyi DSS-3 (taxid:246200)] Back     alignment and assigned GO terms
TIGR_CMR|SPO_1386 SPO_1386 "HIT family protein" [Ruegeria pomeroyi DSS-3 (taxid:246200)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
GSVIVG00011031001
SubName- Full=Chromosome undetermined scaffold_300, whole genome shotgun sequence; (195 aa)
(Vitis vinifera)
Predicted Functional Partners:
 
Sorry, there are no predicted associations at the current settings.
 

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query212
COG0537138 COG0537, Hit, Diadenosine tetraphosphate (Ap4A) hy 3e-33
cd01277103 cd01277, HINT_subgroup, HINT (histidine triad nucl 1e-31
cd01276104 cd01276, PKCI_related, Protein Kinase C Interactin 3e-20
pfam0123097 pfam01230, HIT, HIT domain 5e-15
cd01275126 cd01275, FHIT, FHIT (fragile histidine family): FH 8e-12
pfam11969113 pfam11969, DcpS_C, Scavenger mRNA decapping enzyme 9e-10
cd0046886 cd00468, HIT_like, HIT family: HIT (Histidine tria 7e-04
>gnl|CDD|223611 COG0537, Hit, Diadenosine tetraphosphate (Ap4A) hydrolase and other HIT family hydrolases [Nucleotide transport and metabolism / Carbohydrate transport and metabolism / General function prediction only] Back     alignment and domain information 
 Score =  115 bits (291), Expect = 3e-33
 Identities = 51/149 (34%), Positives = 78/149 (52%), Gaps = 11/149 (7%)

Query: 49  NDCVFCKIIRGESPAVKLYEYDTCLCILDTNPLSLGRFRLRLVVVAIISLSSIVVSTKEL 108
             C+FCKIIRGE PA K+YE +  L  LD  P + G      +V+    +S +     E 
Sbjct: 1   MMCIFCKIIRGEIPANKVYEDEHVLAFLDIYPAAPGH----TLVIPKRHVSDLEDLDPEE 56

Query: 109 PFQNEVVAAMCAKVPLISNAIMKATDADSFNLLVNNGAAAGQVIFHTHIHIIPRKAHDCL 168
                 +A +      I+ A+ +A  AD +N+ +NNG AAGQ +FH HIHIIPR   D  
Sbjct: 57  ------LAELFLLAQKIAKALKEAFGADGYNIGINNGKAAGQEVFHLHIHIIPRYKGDDN 110

Query: 169 WTSESLRRRPLKIDQETSQLADQVREKLS 197
           +       +  + ++E  +LA+++R+ L 
Sbjct: 111 FPGPGWGTKV-EPNEELEELAEKIRKALE 138

Length = 138
>gnl|CDD|238608 cd01277, HINT_subgroup, HINT (histidine triad nucleotide-binding protein) subgroup: Members of this CD belong to the superfamily of histidine triad hydrolases that act on alpha-phosphate of ribonucleotides Back     alignment and domain information
>gnl|CDD|238607 cd01276, PKCI_related, Protein Kinase C Interacting protein related (PKCI): PKCI and related proteins belong to the ubiquitous HIT family of hydrolases that act on alpha-phosphates of ribonucleotides Back     alignment and domain information
>gnl|CDD|216377 pfam01230, HIT, HIT domain Back     alignment and domain information
>gnl|CDD|238606 cd01275, FHIT, FHIT (fragile histidine family): FHIT proteins, related to the HIT family carry a motif HxHxH/Qxx (x, is a hydrophobic amino acid), On the basis of sequence, substrate specificity, structure, evolution and mechanism, HIT proteins are classified into three branches: the Hint branch, which consists of adenosine 5' -monophosphoramide hydrolases, the Fhit branch, that consists of diadenosine polyphosphate hydrolases, and the GalT branch consisting of specific nucloside monophosphate transferases Back     alignment and domain information
>gnl|CDD|221348 pfam11969, DcpS_C, Scavenger mRNA decapping enzyme C-term binding Back     alignment and domain information
>gnl|CDD|238263 cd00468, HIT_like, HIT family: HIT (Histidine triad) proteins, named for a motif related to the sequence HxHxH/Qxx (x, a hydrophobic amino acid), are a superfamily of nucleotide hydrolases and transferases, which act on the alpha-phosphate of ribonucleotides Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 212
COG0537138 Hit Diadenosine tetraphosphate (Ap4A) hydrolase an 100.0
PRK10687119 purine nucleoside phosphoramidase; Provisional 99.97
cd01277103 HINT_subgroup HINT (histidine triad nucleotide-bin 99.96
cd01275126 FHIT FHIT (fragile histidine family): FHIT protein 99.96
cd01276104 PKCI_related Protein Kinase C Interacting protein 99.95
PF0123098 HIT: HIT domain; InterPro: IPR001310 The Histidine 99.94
KOG3275127 consensus Zinc-binding protein of the histidine tr 99.94
cd01278104 aprataxin_related aprataxin related: Aprataxin, a 99.91
cd00608329 GalT Galactose-1-phosphate uridyl transferase (Gal 99.9
PRK11720346 galactose-1-phosphate uridylyltransferase; Provisi 99.9
TIGR00209347 galT_1 galactose-1-phosphate uridylyltransferase, 99.9
cd0046886 HIT_like HIT family: HIT (Histidine triad) protein 99.89
KOG3379150 consensus Diadenosine polyphosphate hydrolase and 99.88
PLN02643336 ADP-glucose phosphorylase 99.88
PF11969116 DcpS_C: Scavenger mRNA decapping enzyme C-term bin 99.68
PF02744166 GalP_UDP_tr_C: Galactose-1-phosphate uridyl transf 99.57
COG1085338 GalT Galactose-1-phosphate uridylyltransferase [En 99.53
KOG4359166 consensus Protein kinase C inhibitor-like protein 99.43
KOG2958354 consensus Galactose-1-phosphate uridylyltransferas 99.11
PF04677121 CwfJ_C_1: Protein similar to CwfJ C-terminus 1; In 98.91
KOG2476528 consensus Uncharacterized conserved protein [Funct 97.89
KOG0562184 consensus Predicted hydrolase (HIT family) [Genera 97.49
cd00608 329 GalT Galactose-1-phosphate uridyl transferase (Gal 96.95
KOG2477628 consensus Uncharacterized conserved protein [Funct 96.85
PLN02643 336 ADP-glucose phosphorylase 96.63
KOG3969310 consensus Uncharacterized conserved protein [Funct 96.6
COG1085 338 GalT Galactose-1-phosphate uridylyltransferase [En 96.19
PLN03103 403 GDP-L-galactose-hexose-1-phosphate guanyltransfera 96.14
PRK11720 346 galactose-1-phosphate uridylyltransferase; Provisi 95.71
TIGR00209 347 galT_1 galactose-1-phosphate uridylyltransferase, 95.31
KOG2720 431 consensus Predicted hydrolase (HIT family) [Genera 94.81
COG4360298 APA2 ATP adenylyltransferase (5',5'''-P-1,P-4-tetr 94.63
PRK05471252 CDP-diacylglycerol pyrophosphatase; Provisional 94.09
TIGR00672250 cdh CDP-diacylglycerol pyrophosphatase, bacterial 93.83
COG2134252 Cdh CDP-diacylglycerol pyrophosphatase [Lipid meta 91.52
PF1339554 HNH_4: HNH endonuclease 91.0
PF02611222 CDH: CDP-diacylglycerol pyrophosphatase; InterPro: 90.88
COG5075305 Uncharacterized conserved protein [Function unknow 90.39
KOG2958 354 consensus Galactose-1-phosphate uridylyltransferas 88.52
PF01087183 GalP_UDP_transf: Galactose-1-phosphate uridyl tran 88.35
PF0184447 HNH: HNH endonuclease; InterPro: IPR002711 HNH end 86.69
PF01076196 Mob_Pre: Plasmid recombination enzyme; InterPro: I 85.76
PRK11295113 hypothetical protein; Provisional 83.98
>COG0537 Hit Diadenosine tetraphosphate (Ap4A) hydrolase and other HIT family hydrolases [Nucleotide transport and metabolism / Carbohydrate transport and metabolism / General function prediction only] Back     alignment and domain information 
Probab=100.00  E-value=1.2e-34  Score=232.65  Aligned_cols=137  Identities=38%  Similarity=0.590  Sum_probs=127.2

Q ss_pred             CCCcccccccCCCCceEEEECCeEEEEEcCCCCCceeeeeeeeeEEEEeCcccccccccCCCCHHHHHHHHHHHHHHHHH
Q 028160           49 NDCVFCKIIRGESPAVKLYEYDTCLCILDTNPLSLGRFRLRLVVVAIISLSSIVVSTKELPFQNEVVAAMCAKVPLISNA  128 (212)
Q Consensus        49 ~~C~FC~ii~~e~p~~iv~e~d~~~a~ld~~P~~~Gh~~~~~~~~lVIPk~rHv~~l~dL~~~~ee~~~l~~~~~~v~~~  128 (212)
                      +.|+||+|+++|.|..+|||++++++|+|.+|.++||+       ||||| +|+.++.||+  ++++.+|+..+++++++
T Consensus         1 ~~ciFc~ii~~e~~~~~Vye~~~~~afld~~P~~~gH~-------LviPk-~h~~~l~~l~--~~~~~~l~~~~~~ia~a   70 (138)
T COG0537           1 MMCIFCKIIRGEIPANKVYEDEHVLAFLDIYPAAPGHT-------LVIPK-RHVSDLEDLD--PEELAELFLLAQKIAKA   70 (138)
T ss_pred             CCceeeeeecCCCCceEEEeCCCEEEEecCCCCCCCeE-------EEEec-cchhhhhhCC--HHHHHHHHHHHHHHHHH
Confidence            36999999999999999999999999999999999999       99999 9999999999  99999999999999999


Q ss_pred             HHHHcCCCceeEEEecCCCCCCccceEEEEEeccCCCCCCCccccccCCCCCChHHHHHHHHHHHHHH
Q 028160          129 IMKATDADSFNLLVNNGAAAGQVIFHTHIHIIPRKAHDCLWTSESLRRRPLKIDQETSQLADQVREKL  196 (212)
Q Consensus       129 l~~~~~~~~~ni~~n~g~~agq~v~HlHiHIIPR~~~d~~w~~~~~~~~~~~~~~e~~~la~~lr~al  196 (212)
                      +++++++++||+++|+|..+||+|+|+|+|||||+.+|..|+...|...... .+++++++++|+++|
T Consensus        71 l~~~~~~~g~ni~~N~g~~agq~V~HlH~HvIPr~~~d~~~~~~~~~~~~~~-~~~l~~~~~~i~~~l  137 (138)
T COG0537          71 LKEAFGADGYNIGINNGKAAGQEVFHLHIHIIPRYKGDDNFPGPGWGTKVEP-NEELEELAEKIRKAL  137 (138)
T ss_pred             HHHHhCCCceEEEEecCcccCcCcceEEEEEcCCcCCCCCcccccccccCCc-HHHHHHHHHHHHHhh
Confidence            9999999999999999999999999999999999999999887777653322 278999999999765

>PRK10687 purine nucleoside phosphoramidase; Provisional Back     alignment and domain information
>cd01277 HINT_subgroup HINT (histidine triad nucleotide-binding protein) subgroup: Members of this CD belong to the superfamily of histidine triad hydrolases that act on alpha-phosphate of ribonucleotides Back     alignment and domain information
>cd01275 FHIT FHIT (fragile histidine family): FHIT proteins, related to the HIT family carry a motif HxHxH/Qxx (x, is a hydrophobic amino acid), On the basis of sequence, substrate specificity, structure, evolution and mechanism, HIT proteins are classified into three branches: the Hint branch, which consists of adenosine 5' -monophosphoramide hydrolases, the Fhit branch, that consists of diadenosine polyphosphate hydrolases, and the GalT branch consisting of specific nucloside monophosphate transferases Back     alignment and domain information
>cd01276 PKCI_related Protein Kinase C Interacting protein related (PKCI): PKCI and related proteins belong to the ubiquitous HIT family of hydrolases that act on alpha-phosphates of ribonucleotides Back     alignment and domain information
>PF01230 HIT: HIT domain; InterPro: IPR001310 The Histidine Triad (HIT) motif, His-x-His-x-His-x-x (x, a hydrophobic amino acid) was identified as being highly conserved in a variety of organisms [] Back     alignment and domain information
>KOG3275 consensus Zinc-binding protein of the histidine triad (HIT) family [Signal transduction mechanisms] Back     alignment and domain information
>cd01278 aprataxin_related aprataxin related: Aprataxin, a HINT family hydrolase is mutated in ataxia oculomotor apraxia syndrome Back     alignment and domain information
>cd00608 GalT Galactose-1-phosphate uridyl transferase (GalT): This enzyme plays a key role in galactose metabolism by catalysing the transfer of a uridine 5'-phosphoryl group from UDP-galactose 1-phosphate Back     alignment and domain information
>PRK11720 galactose-1-phosphate uridylyltransferase; Provisional Back     alignment and domain information
>TIGR00209 galT_1 galactose-1-phosphate uridylyltransferase, family 1 Back     alignment and domain information
>cd00468 HIT_like HIT family: HIT (Histidine triad) proteins, named for a motif related to the sequence HxHxH/Qxx (x, a hydrophobic amino acid), are a superfamily of nucleotide hydrolases and transferases, which act on the alpha-phosphate of ribonucleotides Back     alignment and domain information
>KOG3379 consensus Diadenosine polyphosphate hydrolase and related proteins of the histidine triad (HIT) family [Nucleotide transport and metabolism; General function prediction only] Back     alignment and domain information
>PLN02643 ADP-glucose phosphorylase Back     alignment and domain information
>PF11969 DcpS_C: Scavenger mRNA decapping enzyme C-term binding; PDB: 1VLR_B 1XMM_D 1XML_B 1ST0_A 3BLA_B 3BL9_B 3BL7_B 1ST4_B 1XQU_B Back     alignment and domain information
>PF02744 GalP_UDP_tr_C: Galactose-1-phosphate uridyl transferase, C-terminal domain; InterPro: IPR005850 Galactose-1-phosphate uridyl transferase catalyses the conversion of UDP-glucose and alpha-D-galactose 1-phosphate to alpha-D-glucose 1-phosphate and UDP-galactose during galactose metabolism Back     alignment and domain information
>COG1085 GalT Galactose-1-phosphate uridylyltransferase [Energy production and conversion] Back     alignment and domain information
>KOG4359 consensus Protein kinase C inhibitor-like protein [General function prediction only] Back     alignment and domain information
>KOG2958 consensus Galactose-1-phosphate uridylyltransferase [Energy production and conversion] Back     alignment and domain information
>PF04677 CwfJ_C_1: Protein similar to CwfJ C-terminus 1; InterPro: IPR006768 This group of sequences contain a conserved C-terminal domain which is found in the Schizosaccharomyces pombe (Fission yeast) protein Cwf19 (Q09909 from SWISSPROT) and its homologues Back     alignment and domain information
>KOG2476 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>KOG0562 consensus Predicted hydrolase (HIT family) [General function prediction only] Back     alignment and domain information
>cd00608 GalT Galactose-1-phosphate uridyl transferase (GalT): This enzyme plays a key role in galactose metabolism by catalysing the transfer of a uridine 5'-phosphoryl group from UDP-galactose 1-phosphate Back     alignment and domain information
>KOG2477 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>PLN02643 ADP-glucose phosphorylase Back     alignment and domain information
>KOG3969 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>COG1085 GalT Galactose-1-phosphate uridylyltransferase [Energy production and conversion] Back     alignment and domain information
>PLN03103 GDP-L-galactose-hexose-1-phosphate guanyltransferase; Provisional Back     alignment and domain information
>PRK11720 galactose-1-phosphate uridylyltransferase; Provisional Back     alignment and domain information
>TIGR00209 galT_1 galactose-1-phosphate uridylyltransferase, family 1 Back     alignment and domain information
>KOG2720 consensus Predicted hydrolase (HIT family) [General function prediction only] Back     alignment and domain information
>COG4360 APA2 ATP adenylyltransferase (5',5'''-P-1,P-4-tetraphosphate phosphorylase II) [Nucleotide transport and metabolism] Back     alignment and domain information
>PRK05471 CDP-diacylglycerol pyrophosphatase; Provisional Back     alignment and domain information
>TIGR00672 cdh CDP-diacylglycerol pyrophosphatase, bacterial type Back     alignment and domain information
>COG2134 Cdh CDP-diacylglycerol pyrophosphatase [Lipid metabolism] Back     alignment and domain information
>PF13395 HNH_4: HNH endonuclease Back     alignment and domain information
>PF02611 CDH: CDP-diacylglycerol pyrophosphatase; InterPro: IPR003763 The CDP-diacylglycerol pyrophosphatases 3 Back     alignment and domain information
>COG5075 Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>KOG2958 consensus Galactose-1-phosphate uridylyltransferase [Energy production and conversion] Back     alignment and domain information
>PF01087 GalP_UDP_transf: Galactose-1-phosphate uridyl transferase, N-terminal domain; InterPro: IPR005849 Galactose-1-phosphate uridyl transferase catalyses the conversion of UDP-glucose and alpha-D-galactose 1-phosphate to alpha-D-glucose 1-phosphate and UDP-galactose during galactose metabolism Back     alignment and domain information
>PF01844 HNH: HNH endonuclease; InterPro: IPR002711 HNH endonuclease is found in bacteria and viruses [, , ] Back     alignment and domain information
>PF01076 Mob_Pre: Plasmid recombination enzyme; InterPro: IPR001668 With some plasmids, recombination can occur in a site specific manner that is independent of RecA Back     alignment and domain information
>PRK11295 hypothetical protein; Provisional Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query212
3l7x_A173 The Crystal Structure Of Smu.412c From Streptococcu 5e-16
3o0m_A149 Crystal Structure Of A Zn-Bound Histidine Triad Fam 6e-14
1y23_A145 Crystal Structure Of A Member Of Hit Family Of Prot 3e-13
3imi_A147 2.01 Angstrom Resolution Crystal Structure Of A Hit 8e-13
2eo4_A149 Crystal Structure Of Hypothetical Histidine Triad N 1e-12
3lb5_A161 Crystal Structure Of Hit-Like Protein Involved In C 1e-10
3ksv_A149 Hypothetical Protein From Leishmania Major Length = 5e-10
4egu_A119 0.95a Resolution Structure Of A Histidine Triad Pro 7e-06
1xqu_A147 Hit Family Hydrolase From Clostridium Thermocellum 1e-05
3r6f_A135 Crystal Structure Of A Zinc-Containing Hit Family P 1e-05
3o1x_A126 High Resolution Crystal Structure Of Histidine Tria 2e-05
1rzy_A126 Crystal Structure Of Rabbit Hint Complexed With N- 4e-05
3rhn_A115 Histidine Triad Nucleotide-Binding Protein (Hint) F 4e-05
1kpa_A126 Pkci-1-Zinc Length = 126 8e-05
1kpb_A125 Pkci-1-Apo Length = 125 8e-05
3tw2_A126 High Resolution Structure Of Human Histidine Triad 8e-05
4eqe_A128 Crystal Structure Of Histidine Triad Nucleotide-Bin 8e-05
3o1z_A126 High Resolution Crystal Structure Of Histidine Tria 1e-04
3oj7_A117 Crystal Structure Of A Histidine Triad Family Prote 3e-04
3o1c_A126 High Resolution Crystal Structure Of Histidine Tria 3e-04
>pdb|3L7X|A Chain A, The Crystal Structure Of Smu.412c From Streptococcus Mutans Ua159 Length = 173 Back     alignment and structure 
Iteration: 1

 Score = 80.9 bits (198), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 41/119 (34%), Positives = 60/119 (50%), Gaps = 10/119 (8%)
Query: 46  GHENDCVFCKIIRGESPAVKLYEYDTCLCILDTNPLSLGRFXXXXXXXXXXXXXXXXXXT 105
           G  NDC+FCKI+ G+ P+ K+YE +  L  LD +  + G                     
Sbjct: 33  GSMNDCLFCKIVAGDIPSSKVYEDEDVLAFLDISQATKGH----------TLVIPKEHVR 82
Query: 106 KELPFQNEVVAAMCAKVPLISNAIMKATDADSFNLLVNNGAAAGQVIFHTHIHIIPRKA 164
             L       A + A++P I+ A+ KAT AD  N++ NN   AGQ +FH H+H++PR A
Sbjct: 83  NALEMTQTQAANLFARIPKIARALQKATKADGLNIINNNEETAGQTVFHAHVHLVPRFA 141
>pdb|3O0M|A Chain A, Crystal Structure Of A Zn-Bound Histidine Triad Family Protein From Mycobacterium Smegmatis Length = 149 Back     alignment and structure
>pdb|1Y23|A Chain A, Crystal Structure Of A Member Of Hit Family Of Proteins From Bacillus Subtilis Length = 145 Back     alignment and structure
>pdb|3IMI|A Chain A, 2.01 Angstrom Resolution Crystal Structure Of A Hit Family Protein From Bacillus Anthracis Str. 'ames Ancestor' Length = 147 Back     alignment and structure
>pdb|2EO4|A Chain A, Crystal Structure Of Hypothetical Histidine Triad Nucleotide-Binding Protein St2152 From Sulfolobus Tokodaii Strain7 Length = 149 Back     alignment and structure
>pdb|3LB5|A Chain A, Crystal Structure Of Hit-Like Protein Involved In Cell-Cycle Regulation From Bartonella Henselae With Unknown Ligand Length = 161 Back     alignment and structure
>pdb|3KSV|A Chain A, Hypothetical Protein From Leishmania Major Length = 149 Back     alignment and structure
>pdb|4EGU|A Chain A, 0.95a Resolution Structure Of A Histidine Triad Protein From Clostridium Difficile Length = 119 Back     alignment and structure
>pdb|1XQU|A Chain A, Hit Family Hydrolase From Clostridium Thermocellum Cth-393 Length = 147 Back     alignment and structure
>pdb|3R6F|A Chain A, Crystal Structure Of A Zinc-Containing Hit Family Protein From Encephalitozoon Cuniculi Length = 135 Back     alignment and structure
>pdb|3O1X|A Chain A, High Resolution Crystal Structure Of Histidine Triad Nucleotide- Binding Protein 1 (Hint1) C84a Mutant From Rabbit Complexed With Adenosine Length = 126 Back     alignment and structure
>pdb|1RZY|A Chain A, Crystal Structure Of Rabbit Hint Complexed With N- Ethylsulfamoyladenosine Length = 126 Back     alignment and structure
>pdb|3RHN|A Chain A, Histidine Triad Nucleotide-Binding Protein (Hint) From Rabbit Complexed With Gmp Length = 115 Back     alignment and structure
>pdb|1KPA|A Chain A, Pkci-1-Zinc Length = 126 Back     alignment and structure
>pdb|1KPB|A Chain A, Pkci-1-Apo Length = 125 Back     alignment and structure
>pdb|3TW2|A Chain A, High Resolution Structure Of Human Histidine Triad Nucleotide-binding Protein 1 (hhint1)/amp Complex In A Monoclinic Space Group Length = 126 Back     alignment and structure
>pdb|4EQE|A Chain A, Crystal Structure Of Histidine Triad Nucleotide-Binding Protein 1 (Hint1) From Human Complexed With Lys-Ams Length = 128 Back     alignment and structure
>pdb|3O1Z|A Chain A, High Resolution Crystal Structure Of Histidine Triad Nucleotide- Binding Protein 1 (Hint1) Double Cysteine Mutant From Rabbit Length = 126 Back     alignment and structure
>pdb|3OJ7|A Chain A, Crystal Structure Of A Histidine Triad Family Protein From Entamoeba Histolytica, Bound To Sulfate Length = 117 Back     alignment and structure
>pdb|3O1C|A Chain A, High Resolution Crystal Structure Of Histidine Triad Nucleotide- Binding Protein 1 (Hint1) C38a Mutant From Rabbit Complexed With Adenosine Length = 126 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query212
2eo4_A149 150AA long hypothetical histidine triad nucleotid 1e-36
3l7x_A173 SMU.412C, putative HIT-like protein involved in ce 9e-36
1y23_A145 HIT, histidine triad protein; HIT protein, PKCI-1, 3e-35
3imi_A147 HIT family protein; structural genomics, infectiou 2e-34
3lb5_A161 HIT-like protein involved in cell-cycle regulatio; 2e-34
3ksv_A149 Uncharacterized protein; HIT family, structural ge 5e-34
3o0m_A149 HIT family protein; ssgcid, NIH, niaid, SBRI, UW, 2e-31
3p0t_A138 Uncharacterized protein; ssgcid, HIT-like protein, 9e-28
3r6f_A135 HIT family protein; structural genomics, seattle s 3e-27
1fit_A147 FragIle histidine protein; FHIT, fragIle histidine 1e-23
3ano_A218 AP-4-A phosphorylase; diadenosine polyphosphate, H 8e-23
2oik_A154 Histidine triad (HIT) protein; HIT-like fold, stru 3e-21
4egu_A119 Histidine triad (HIT) protein; structural genomics 3e-19
3n1s_A119 HIT-like protein HINT; histidine triad nucleotide 4e-19
3oj7_A117 Putative histidine triad family protein; hydrolase 8e-19
1xqu_A147 HIT family hydrolase; protein STRU initiative, PSI 1e-18
3o1c_A126 Histidine triad nucleotide-binding protein 1; hydr 1e-17
3i24_A149 HIT family hydrolase; structural genomics, PSI-2, 2e-11
3nrd_A135 Histidine triad (HIT) protein; structural genomics 4e-11
3sp4_A204 Aprataxin-like protein; HIT domain, zinc finger, D 2e-10
3ohe_A137 Histidine triad (HIT) protein; structural genomics 9e-10
3i4s_A149 Histidine triad protein; hydrolase, phosphatase, H 5e-09
1ems_A440 Nitfhit, NIT-fragIle histidine triad fusion protei 1e-08
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 4e-05
>2eo4_A 150AA long hypothetical histidine triad nucleotid protein; HIT family, structural genomics, NPPSFA; 1.80A {Sulfolobus tokodaii} Length = 149 Back     alignment and structure
 Score =  124 bits (313), Expect = 1e-36
 Identities = 49/153 (32%), Positives = 66/153 (43%), Gaps = 18/153 (11%)

Query: 51  CVFCKIIRGESPAVKLYEYDTCLCILDTNPLSLGRFRLRLVV----VAIISLSSIVVSTK 106
           C FC II  E     +YE +    ILD  P+SLG     LV+                  
Sbjct: 1   CTFCSIINRELEGYFVYEDEKFAAILDKYPVSLGHT---LVIPKKHFENYL--------- 48

Query: 107 ELPFQNEVVAAMCAKVPLISNAIMKATDADSFNLLVNNGAAAGQVIFHTHIHIIPRKAHD 166
           E     + +A +   V L+S  I  A  AD   LL N G +AGQVIFH H+HIIP    D
Sbjct: 49  EAD--EDTLAELAKVVKLVSLGIKDAVKADGLRLLTNIGRSAGQVIFHLHVHIIPTWEGD 106

Query: 167 CLWTSESLRRRPLKIDQETSQLADQVREKLSNI 199
                +S + R  +  +    L   +RE + N+
Sbjct: 107 YPDIFKSFKPRKEQEKEYYELLQKIIRESIENL 139
>3l7x_A SMU.412C, putative HIT-like protein involved in cell-cycle regulation; 1.70A {Streptococcus mutans} Length = 173 Back     alignment and structure
>1y23_A HIT, histidine triad protein; HIT protein, PKCI-1, cell-cycle regulation, NYSGXRC, structural genomics, protein structure initiative; 2.30A {Bacillus subtilis} SCOP: d.13.1.1 Length = 145 Back     alignment and structure
>3imi_A HIT family protein; structural genomics, infectious diseases for structural genomics of infectious diseases, unknown FUN csgid; 2.01A {Bacillus anthracis str} Length = 147 Back     alignment and structure
>3lb5_A HIT-like protein involved in cell-cycle regulatio; niaid, seattle structural genomics center for infectious DIS ssgcid, histidine triad; 1.90A {Bartonella henselae} Length = 161 Back     alignment and structure
>3ksv_A Uncharacterized protein; HIT family, structural genomics, structural genomics of PATH protozoa consortium, SGPP, unknown function; 1.90A {Leishmania major} Length = 149 Back     alignment and structure
>3o0m_A HIT family protein; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, hydrola structural genomics; HET: AMP; 1.90A {Mycobacterium smegmatis str} Length = 149 Back     alignment and structure
>3p0t_A Uncharacterized protein; ssgcid, HIT-like protein, mycobacerium paratuberculosis, STR genomics; 1.90A {Mycobacterium avium subsp} Length = 138 Back     alignment and structure
>3r6f_A HIT family protein; structural genomics, seattle structural genomics center for infectious disease, ssgcid, protozoan parasite; 1.85A {Encephalitozoon cuniculi} Length = 135 Back     alignment and structure
>1fit_A FragIle histidine protein; FHIT, fragIle histidine triad protein, putative human tumor suppressor, advanced photon source, APS; HET: FRU; 1.85A {Homo sapiens} SCOP: d.13.1.1 PDB: 1fhi_A* 2fit_A* 3fit_A* 4fit_A 5fit_A* 6fit_A* 2fhi_A* Length = 147 Back     alignment and structure
>3ano_A AP-4-A phosphorylase; diadenosine polyphosphate, HIT transferase; HET: PG4; 1.89A {Mycobacterium tuberculosis} Length = 218 Back     alignment and structure
>2oik_A Histidine triad (HIT) protein; HIT-like fold, structural genomics, joint center for structu genomics, JCSG; HET: MSE; 1.65A {Methylobacillus flagellatus} SCOP: d.13.1.1 Length = 154 Back     alignment and structure
>4egu_A Histidine triad (HIT) protein; structural genomics, center for structural genomics of infec diseases, csgid, HIT domain, unknown function; HET: 5GP; 0.95A {Clostridium difficile} Length = 119 Back     alignment and structure
>3n1s_A HIT-like protein HINT; histidine triad nucleotide binding protein, GMP, hydro; HET: 5GP; 1.45A {Escherichia coli} PDB: 3n1t_A* Length = 119 Back     alignment and structure
>3oj7_A Putative histidine triad family protein; hydrolase, structural genomics, seattle structural genomics for infectious disease, ssgcid; 1.40A {Entamoeba histolytica} PDB: 3omf_A* 3oxk_A* Length = 117 Back     alignment and structure
>1xqu_A HIT family hydrolase; protein STRU initiative, PSI, southeast collaboratory for structural GEN secsg; 2.30A {Clostridium thermocellum} SCOP: d.13.1.1 Length = 147 Back     alignment and structure
>3o1c_A Histidine triad nucleotide-binding protein 1; hydrolase, HINT protein, HIT protein, adenosine 5'- monophosphoramidase; HET: ADN; 1.08A {Oryctolagus cuniculus} PDB: 3llj_A* 1rzy_A* 3qgz_A* 3o1z_A 3o1x_A* 4eqe_A* 4eqg_A* 4eqh_A* 3tw2_A* 1kpb_A 1kpf_A* 1kpa_A 1kpc_A 1av5_A* 1kpe_A* 4rhn_A* 3rhn_A* 5rhn_A* 6rhn_A Length = 126 Back     alignment and structure
>3i24_A HIT family hydrolase; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 1.50A {Vibrio fischeri ES114} Length = 149 Back     alignment and structure
>3nrd_A Histidine triad (HIT) protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE; 2.06A {Sinorhizobium meliloti} Length = 135 Back     alignment and structure
>3sp4_A Aprataxin-like protein; HIT domain, zinc finger, DNA-binding protein, DNA deadenylas hydrolase; 1.80A {Schizosaccharomyces pombe} PDB: 3spd_A* 3spl_A* 3szq_A* Length = 204 Back     alignment and structure
>3ohe_A Histidine triad (HIT) protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-biology; HET: MSE; 1.20A {Marinobacter aquaeolei} Length = 137 Back     alignment and structure
>3i4s_A Histidine triad protein; hydrolase, phosphatase, HIT superfamily, PSI-2, NYSGXRC, STR genomics, protein structure initiative; 1.75A {Bradyrhizobium japonicum} Length = 149 Back     alignment and structure
>1ems_A Nitfhit, NIT-fragIle histidine triad fusion protein; WORM, nitrilase, nucleotide-binding protein, cancer; 2.80A {Caenorhabditis elegans} SCOP: d.13.1.1 d.160.1.1 Length = 440 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query212
3ksv_A149 Uncharacterized protein; HIT family, structural ge 100.0
3o0m_A149 HIT family protein; ssgcid, NIH, niaid, SBRI, UW, 100.0
3imi_A147 HIT family protein; structural genomics, infectiou 100.0
3lb5_A161 HIT-like protein involved in cell-cycle regulatio; 100.0
3l7x_A173 SMU.412C, putative HIT-like protein involved in ce 100.0
1y23_A145 HIT, histidine triad protein; HIT protein, PKCI-1, 100.0
2eo4_A149 150AA long hypothetical histidine triad nucleotid 100.0
3r6f_A135 HIT family protein; structural genomics, seattle s 100.0
3p0t_A138 Uncharacterized protein; ssgcid, HIT-like protein, 100.0
3ano_A218 AP-4-A phosphorylase; diadenosine polyphosphate, H 99.97
3n1s_A119 HIT-like protein HINT; histidine triad nucleotide 99.97
2oik_A154 Histidine triad (HIT) protein; HIT-like fold, stru 99.97
3o1c_A126 Histidine triad nucleotide-binding protein 1; hydr 99.96
1fit_A147 FragIle histidine protein; FHIT, fragIle histidine 99.96
3oj7_A117 Putative histidine triad family protein; hydrolase 99.96
4egu_A119 Histidine triad (HIT) protein; structural genomics 99.96
1xqu_A147 HIT family hydrolase; protein STRU initiative, PSI 99.96
1ems_A440 Nitfhit, NIT-fragIle histidine triad fusion protei 99.95
3ohe_A137 Histidine triad (HIT) protein; structural genomics 99.95
3i24_A149 HIT family hydrolase; structural genomics, PSI-2, 99.94
3nrd_A135 Histidine triad (HIT) protein; structural genomics 99.92
1gup_A348 Galactose-1-phosphate uridylyltransferase; nucleot 99.92
1z84_A351 Galactose-1-phosphate uridyl transferase-like prot 99.92
3i4s_A149 Histidine triad protein; hydrolase, phosphatase, H 99.91
3sp4_A204 Aprataxin-like protein; HIT domain, zinc finger, D 99.35
1z84_A 351 Galactose-1-phosphate uridyl transferase-like prot 98.64
3bl9_A301 Scavenger mRNA-decapping enzyme DCPS; ligand compl 98.62
1vlr_A350 MRNA decapping enzyme; 16740816, structural genomi 98.56
1gup_A 348 Galactose-1-phosphate uridylyltransferase; nucleot 96.08
2pof_A227 CDP-diacylglycerol pyrophosphatase; NYSGXRC, PFAM0 93.1
2qgp_A112 HNH endonuclease; Q39X46, GMR87, X-RAY, NESG, stru 91.78
>3ksv_A Uncharacterized protein; HIT family, structural genomics, structural genomics of PATH protozoa consortium, SGPP, unknown function; 1.90A {Leishmania major} SCOP: d.13.1.0 Back     alignment and structure
Probab=100.00  E-value=1.8e-37  Score=249.93  Aligned_cols=141  Identities=29%  Similarity=0.446  Sum_probs=130.0

Q ss_pred             CCCCCcccccccCCCCceEEEECCeEEEEEcCCCCCceeeeeeeeeEEEEeCcccccccccCCCCHHHHHHHHHHHHHHH
Q 028160           47 HENDCVFCKIIRGESPAVKLYEYDTCLCILDTNPLSLGRFRLRLVVVAIISLSSIVVSTKELPFQNEVVAAMCAKVPLIS  126 (212)
Q Consensus        47 ~~~~C~FC~ii~~e~p~~iv~e~d~~~a~ld~~P~~~Gh~~~~~~~~lVIPk~rHv~~l~dL~~~~ee~~~l~~~~~~v~  126 (212)
                      +..+|+||+|++||.|+++|||++.++||+|.+|.+|||+       ||||| +|+.++.||+  ++++.+|+.++++++
T Consensus         9 ~~~~~iFc~Ii~geip~~iV~ed~~~~af~d~~P~~pgH~-------LViPk-~H~~~l~dL~--~~e~~~l~~~~~~v~   78 (149)
T 3ksv_A            9 MAANCIFCKIIKGDIPCAKVAETSKALAFMDINPLSRGHM-------LVIPK-EHASCLHELG--MEDAADVGVLLAKAS   78 (149)
T ss_dssp             CCTTCHHHHHHHTSSCCCEEEECSSEEEEECSSCSSTTCE-------EEEES-SCCSSGGGSC--HHHHHHHHHHHHHHH
T ss_pred             ccccCHHHHHHcCCCCccEEEECCCEEEEECCCCCCCCEE-------EEEeC-hhhhhhhhCC--HHHHHHHHHHHHHHH
Confidence            4468999999999999999999999999999999999999       99999 9999999999  999999999999999


Q ss_pred             HHHHHHcCCCceeEEEecCCCCCCccceEEEEEeccCCCCCCCccccccCCCCCChHHHHHHHHHHHHHHHhh
Q 028160          127 NAIMKATDADSFNLLVNNGAAAGQVIFHTHIHIIPRKAHDCLWTSESLRRRPLKIDQETSQLADQVREKLSNI  199 (212)
Q Consensus       127 ~~l~~~~~~~~~ni~~n~g~~agq~v~HlHiHIIPR~~~d~~w~~~~~~~~~~~~~~e~~~la~~lr~al~~~  199 (212)
                      +++.+.+++++||+++|+|+.+||+|+|+|+|||||+.+|..|+ ..|...++. ++++++++++||++|++|
T Consensus        79 ~~l~~~~~~~g~ni~~n~g~~aGq~v~HlHiHiiPR~~~d~g~~-~~w~~~~~~-~~~l~~~~~~lr~~l~~~  149 (149)
T 3ksv_A           79 RAVAGPDGSMQYNVLQNNGSLAHQEVPHVHFHIIPKTDEKTGLK-IGWDTVKVA-SDELAEDAKRYSEAIAKI  149 (149)
T ss_dssp             HHHHCTTSCCEEEEEECCSTTTTCCSSSCCEEEEEECCTTSSCC-CCCCCCCCC-HHHHHHHHHHHHHHHHTC
T ss_pred             HHHHHhhCCCCEEEEEecCcccCCCCCEEEEEEEecccCCCCcc-cCCCCCCCC-HHHHHHHHHHHHHHHhhC
Confidence            99999999999999999999999999999999999999987665 245444443 889999999999999764
>3o0m_A HIT family protein; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, hydrola structural genomics; HET: AMP; 1.90A {Mycobacterium smegmatis str} Back     alignment and structure
>3imi_A HIT family protein; structural genomics, infectious diseases for structural genomics of infectious diseases, unknown FUN csgid; 2.01A {Bacillus anthracis str} SCOP: d.13.1.1 Back     alignment and structure
>3lb5_A HIT-like protein involved in cell-cycle regulatio; niaid, seattle structural genomics center for infectious DIS ssgcid, histidine triad; 1.90A {Bartonella henselae} Back     alignment and structure
>3l7x_A SMU.412C, putative HIT-like protein involved in cell-cycle regulation; 1.70A {Streptococcus mutans} Back     alignment and structure
>1y23_A HIT, histidine triad protein; HIT protein, PKCI-1, cell-cycle regulation, NYSGXRC, structural genomics, protein structure initiative; 2.30A {Bacillus subtilis} SCOP: d.13.1.1 Back     alignment and structure
>2eo4_A 150AA long hypothetical histidine triad nucleotid protein; HIT family, structural genomics, NPPSFA; 1.80A {Sulfolobus tokodaii} Back     alignment and structure
>3r6f_A HIT family protein; structural genomics, seattle structural genomics center for infectious disease, ssgcid, protozoan parasite; 1.85A {Encephalitozoon cuniculi} Back     alignment and structure
>3p0t_A Uncharacterized protein; ssgcid, HIT-like protein, mycobacerium paratuberculosis, STR genomics; 1.90A {Mycobacterium avium subsp} Back     alignment and structure
>3ano_A AP-4-A phosphorylase; diadenosine polyphosphate, HIT transferase; HET: PG4; 1.89A {Mycobacterium tuberculosis} Back     alignment and structure
>3n1s_A HIT-like protein HINT; histidine triad nucleotide binding protein, GMP, hydro; HET: 5GP; 1.45A {Escherichia coli} SCOP: d.13.1.0 PDB: 3n1t_A* Back     alignment and structure
>2oik_A Histidine triad (HIT) protein; HIT-like fold, structural genomics, joint center for structu genomics, JCSG; HET: MSE; 1.65A {Methylobacillus flagellatus} SCOP: d.13.1.1 Back     alignment and structure
>3o1c_A Histidine triad nucleotide-binding protein 1; hydrolase, HINT protein, HIT protein, adenosine 5'- monophosphoramidase; HET: ADN; 1.08A {Oryctolagus cuniculus} SCOP: d.13.1.1 PDB: 3llj_A* 1rzy_A* 3qgz_A* 3o1z_A 3o1x_A* 4eqe_A* 4eqg_A* 4eqh_A* 3tw2_A* 1kpb_A 1kpf_A* 1kpa_A 1kpc_A 1av5_A* 1kpe_A* 4rhn_A* 3rhn_A* 5rhn_A* 6rhn_A Back     alignment and structure
>1fit_A FragIle histidine protein; FHIT, fragIle histidine triad protein, putative human tumor suppressor, advanced photon source, APS; HET: FRU; 1.85A {Homo sapiens} SCOP: d.13.1.1 PDB: 1fhi_A* 2fit_A* 3fit_A* 4fit_A 5fit_A* 6fit_A* 2fhi_A* Back     alignment and structure
>3oj7_A Putative histidine triad family protein; hydrolase, structural genomics, seattle structural genomics for infectious disease, ssgcid; 1.40A {Entamoeba histolytica} SCOP: d.13.1.0 PDB: 3omf_A* 3oxk_A* Back     alignment and structure
>4egu_A Histidine triad (HIT) protein; structural genomics, center for structural genomics of infec diseases, csgid, HIT domain, unknown function; HET: 5GP; 0.95A {Clostridium difficile} Back     alignment and structure
>1xqu_A HIT family hydrolase; protein STRU initiative, PSI, southeast collaboratory for structural GEN secsg; 2.30A {Clostridium thermocellum} SCOP: d.13.1.1 Back     alignment and structure
>1ems_A Nitfhit, NIT-fragIle histidine triad fusion protein; WORM, nitrilase, nucleotide-binding protein, cancer; 2.80A {Caenorhabditis elegans} SCOP: d.13.1.1 d.160.1.1 Back     alignment and structure
>3ohe_A Histidine triad (HIT) protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-biology; HET: MSE; 1.20A {Marinobacter aquaeolei} Back     alignment and structure
>3i24_A HIT family hydrolase; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 1.50A {Vibrio fischeri ES114} Back     alignment and structure
>3nrd_A Histidine triad (HIT) protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE; 2.06A {Sinorhizobium meliloti} Back     alignment and structure
>1gup_A Galactose-1-phosphate uridylyltransferase; nucleotidyltransferase, galactose metabolism; HET: GDU; 1.80A {Escherichia coli} SCOP: d.13.1.2 d.13.1.2 PDB: 1guq_A* 1hxq_A* 1hxp_A* Back     alignment and structure
>1z84_A Galactose-1-phosphate uridyl transferase-like protein; GALT, zinc, AMP, structural genomics, protein structure initiative, CESG; HET: AMP; 1.83A {Arabidopsis thaliana} SCOP: d.13.1.2 d.13.1.2 PDB: 1zwj_A 2q4h_A* 2q4l_A 2h39_A* Back     alignment and structure
>3i4s_A Histidine triad protein; hydrolase, phosphatase, HIT superfamily, PSI-2, NYSGXRC, STR genomics, protein structure initiative; 1.75A {Bradyrhizobium japonicum} Back     alignment and structure
>3sp4_A Aprataxin-like protein; HIT domain, zinc finger, DNA-binding protein, DNA deadenylas hydrolase; 1.80A {Schizosaccharomyces pombe} PDB: 3spd_A* 3spl_A* 3szq_A* Back     alignment and structure
>1z84_A Galactose-1-phosphate uridyl transferase-like protein; GALT, zinc, AMP, structural genomics, protein structure initiative, CESG; HET: AMP; 1.83A {Arabidopsis thaliana} SCOP: d.13.1.2 d.13.1.2 PDB: 1zwj_A 2q4h_A* 2q4l_A 2h39_A* Back     alignment and structure
>3bl9_A Scavenger mRNA-decapping enzyme DCPS; ligand complex, cytoplasm, hydrolase, nonsense-mediated mRNA decay, nucleus, polymorphism, structural genomics; HET: DD2; 1.80A {Homo sapiens} SCOP: d.13.1.3 d.246.1.1 PDB: 3bl7_A* 3bla_A* Back     alignment and structure
>1vlr_A MRNA decapping enzyme; 16740816, structural genomics, JCSG, protein structure initiative, PSI, joint center for structural genomics; 1.83A {Mus musculus} SCOP: d.13.1.3 d.246.1.1 PDB: 1xmm_B* 1xml_B 1st0_B* 1st4_B* Back     alignment and structure
>1gup_A Galactose-1-phosphate uridylyltransferase; nucleotidyltransferase, galactose metabolism; HET: GDU; 1.80A {Escherichia coli} SCOP: d.13.1.2 d.13.1.2 PDB: 1guq_A* 1hxq_A* 1hxp_A* Back     alignment and structure
>2pof_A CDP-diacylglycerol pyrophosphatase; NYSGXRC, PFAM02611, PSI-2, phospholipid biosynthesis structural genomics, protein structure initiative; 1.40A {Escherichia coli} SCOP: d.13.1.4 Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 212
d1y23a_139 d.13.1.1 (A:) Hit {Bacillus subtilis [TaxId: 1423] 4e-25
d1kpfa_111 d.13.1.1 (A:) Protein kinase C inhibitor-1, PKCI-1 2e-23
d1xqua_113 d.13.1.1 (A:) Putative hydrolase {Clostridium ther 3e-22
d1emsa1160 d.13.1.1 (A:281-440) NIT-FHIT fusion protein, C-te 3e-20
d1fita_146 d.13.1.1 (A:) FHIT (fragile histidine triad protei 5e-18
d2oika1139 d.13.1.1 (A:6-144) Histidine triad protein Mfla250 3e-16
d1z84a2156 d.13.1.2 (A:196-351) Galactose-1-phosphate uridyly 4e-11
d1guqa2171 d.13.1.2 (A:178-348) Galactose-1-phosphate uridyly 3e-07
>d1y23a_ d.13.1.1 (A:) Hit {Bacillus subtilis [TaxId: 1423]} Length = 139 Back     information, alignment and structure

class: Alpha and beta proteins (a+b)
fold: HIT-like
superfamily: HIT-like
family: HIT (HINT, histidine triad) family of protein kinase-interacting proteins
domain: Hit
species: Bacillus subtilis [TaxId: 1423]

 Score = 93.4 bits (231), Expect = 4e-25
 Identities = 39/148 (26%), Positives = 65/148 (43%), Gaps = 10/148 (6%)

Query: 50  DCVFCKIIRGESPAVKLYEYDTCLCILDTNPLSLGRFRLRLVVVAIISLSSIVVSTKELP 109
           +C+FCKII G+ P+ K+YE +  L  LD + ++ G   +                     
Sbjct: 2   NCIFCKIIAGDIPSAKVYEDEHVLAFLDISQVTKGHTLVI----------PKTHIENVYE 51

Query: 110 FQNEVVAAMCAKVPLISNAIMKATDADSFNLLVNNGAAAGQVIFHTHIHIIPRKAHDCLW 169
           F +E+       VP I+ AI    +    N L NNG  AGQ +FH H+HIIPR      +
Sbjct: 52  FTDELAKQYFHAVPKIARAIRDEFEPIGLNTLNNNGEKAGQSVFHYHMHIIPRYGKGDGF 111

Query: 170 TSESLRRRPLKIDQETSQLADQVREKLS 197
            +           ++   ++  + ++L+
Sbjct: 112 GAVWKTHADDYKPEDLQNISSSIAKRLA 139
>d1kpfa_ d.13.1.1 (A:) Protein kinase C inhibitor-1, PKCI-1 {Human (Homo sapiens) [TaxId: 9606]} Length = 111 Back     information, alignment and structure
>d1xqua_ d.13.1.1 (A:) Putative hydrolase {Clostridium thermocellum [TaxId: 1515]} Length = 113 Back     information, alignment and structure
>d1emsa1 d.13.1.1 (A:281-440) NIT-FHIT fusion protein, C-terminal domain {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 160 Back     information, alignment and structure
>d1fita_ d.13.1.1 (A:) FHIT (fragile histidine triad protein) {Human (Homo sapiens) [TaxId: 9606]} Length = 146 Back     information, alignment and structure
>d2oika1 d.13.1.1 (A:6-144) Histidine triad protein Mfla2506 {Methylobacillus flagellatus [TaxId: 405]} Length = 139 Back     information, alignment and structure
>d1z84a2 d.13.1.2 (A:196-351) Galactose-1-phosphate uridylyltransferase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 156 Back     information, alignment and structure
>d1guqa2 d.13.1.2 (A:178-348) Galactose-1-phosphate uridylyltransferase {Escherichia coli [TaxId: 562]} Length = 171 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query212
d1y23a_139 Hit {Bacillus subtilis [TaxId: 1423]} 100.0
d1emsa1160 NIT-FHIT fusion protein, C-terminal domain {Nemato 99.98
d2oika1139 Histidine triad protein Mfla2506 {Methylobacillus 99.97
d1kpfa_111 Protein kinase C inhibitor-1, PKCI-1 {Human (Homo 99.97
d1xqua_113 Putative hydrolase {Clostridium thermocellum [TaxI 99.97
d1fita_146 FHIT (fragile histidine triad protein) {Human (Hom 99.96
d1z84a2156 Galactose-1-phosphate uridylyltransferase {Thale c 99.93
d1guqa2171 Galactose-1-phosphate uridylyltransferase {Escheri 99.92
d1vlra1192 mRNA decapping enzyme DcpS C-terminal domain {Mous 99.08
d1z84a1173 Galactose-1-phosphate uridylyltransferase {Thale c 97.62
d1guqa1176 Galactose-1-phosphate uridylyltransferase {Escheri 96.97
d2pofa1220 CDP-diacylglycerol pyrophosphatase CDH {Escherichi 93.73
>d1y23a_ d.13.1.1 (A:) Hit {Bacillus subtilis [TaxId: 1423]} Back     information, alignment and structure
class: Alpha and beta proteins (a+b)
fold: HIT-like
superfamily: HIT-like
family: HIT (HINT, histidine triad) family of protein kinase-interacting proteins
domain: Hit
species: Bacillus subtilis [TaxId: 1423]

Probab=100.00  E-value=1.3e-37  Score=244.18  Aligned_cols=138  Identities=29%  Similarity=0.526  Sum_probs=124.4

Q ss_pred             CCCcccccccCCCCceEEEECCeEEEEEcCCCCCceeeeeeeeeEEEEeCcccccccccCCCCHHHHHHHHHHHHHHHHH
Q 028160           49 NDCVFCKIIRGESPAVKLYEYDTCLCILDTNPLSLGRFRLRLVVVAIISLSSIVVSTKELPFQNEVVAAMCAKVPLISNA  128 (212)
Q Consensus        49 ~~C~FC~ii~~e~p~~iv~e~d~~~a~ld~~P~~~Gh~~~~~~~~lVIPk~rHv~~l~dL~~~~ee~~~l~~~~~~v~~~  128 (212)
                      ++|+||+|++||.|+.+|||+|.++||+|.+|.++||+       ||||| +|+.++.||+  ++++.+++..+..++++
T Consensus         1 e~CiFC~I~~~e~p~~~i~ede~~~af~d~~P~~~GH~-------LViPk-~H~~~~~dL~--~~~~~~l~~~~~~~~~~   70 (139)
T d1y23a_           1 ENCIFCKIIAGDIPSAKVYEDEHVLAFLDISQVTKGHT-------LVIPK-THIENVYEFT--DELAKQYFHAVPKIARA   70 (139)
T ss_dssp             CCCHHHHHHHTSSCCCEEEECSSEEEEECTTCSSTTCE-------EEEES-SCCSSGGGCC--HHHHHTTTTHHHHHHHH
T ss_pred             CcCccCccccCCCCccEEEECCCEEEEecCCCCCCcEE-------EEEEe-cccccccccc--hHHHHHHHHHHHHHHHH
Confidence            47999999999999999999999999999999999999       99999 9999999999  99999999999999999


Q ss_pred             HHHHcCCCceeEEEecCCCCCCccceEEEEEeccCCCCCCCccccccCC-CCCChHHHHHHHHHHHHHHH
Q 028160          129 IMKATDADSFNLLVNNGAAAGQVIFHTHIHIIPRKAHDCLWTSESLRRR-PLKIDQETSQLADQVREKLS  197 (212)
Q Consensus       129 l~~~~~~~~~ni~~n~g~~agq~v~HlHiHIIPR~~~d~~w~~~~~~~~-~~~~~~e~~~la~~lr~al~  197 (212)
                      +.+.+++++||+++|+|+.+||+|+|+|+|||||+.+|..|.. .|... ....++|+++++++||++|+
T Consensus        71 l~~~~~~~g~~i~~n~g~~agq~v~H~H~HviPR~~~~~~~~~-~~~~~~~~~~~e~~~~~~~~i~~~Ls  139 (139)
T d1y23a_          71 IRDEFEPIGLNTLNNNGEKAGQSVFHYHMHIIPRYGKGDGFGA-VWKTHADDYKPEDLQNISSSIAKRLA  139 (139)
T ss_dssp             HHHHHCCSEEEEEEEESGGGTCCSSSCCEEEEEECSTTCSEEE-EECCCGGGSCHHHHHHHHHHHHHHTC
T ss_pred             HhhhcccCCcEEEeCCCccccEecCEEEEEEEccccCCCCccc-ccccCCCCCCHHHHHHHHHHHHHhcC
Confidence            9999999999999999999999999999999999977665432 23221 12348899999999999874
>d1emsa1 d.13.1.1 (A:281-440) NIT-FHIT fusion protein, C-terminal domain {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Back     information, alignment and structure
>d2oika1 d.13.1.1 (A:6-144) Histidine triad protein Mfla2506 {Methylobacillus flagellatus [TaxId: 405]} Back     information, alignment and structure
>d1kpfa_ d.13.1.1 (A:) Protein kinase C inhibitor-1, PKCI-1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1xqua_ d.13.1.1 (A:) Putative hydrolase {Clostridium thermocellum [TaxId: 1515]} Back     information, alignment and structure
>d1fita_ d.13.1.1 (A:) FHIT (fragile histidine triad protein) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1z84a2 d.13.1.2 (A:196-351) Galactose-1-phosphate uridylyltransferase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Back     information, alignment and structure
>d1guqa2 d.13.1.2 (A:178-348) Galactose-1-phosphate uridylyltransferase {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1vlra1 d.13.1.3 (A:146-337) mRNA decapping enzyme DcpS C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1z84a1 d.13.1.2 (A:23-195) Galactose-1-phosphate uridylyltransferase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Back     information, alignment and structure
>d1guqa1 d.13.1.2 (A:2-177) Galactose-1-phosphate uridylyltransferase {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d2pofa1 d.13.1.4 (A:31-250) CDP-diacylglycerol pyrophosphatase CDH {Escherichia coli [TaxId: 562]} Back     information, alignment and structure