Citrus Sinensis ID: 028174

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210--
MCKVKILKSTQLVCLSDLVTGCVIFVVGGHINPAVTFGLFLARKVSLIRAVAYMVAQCLGAICGVGLVKAFMKHEYNSLGGGANTVASGYNKGSALGAEIIGTFVLVYTVFSATDPKRSARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARSFGAAVIYNNDKAWDDHWIFWVGPFVGALAAAAYHQYILRAAAIKALGSFRSNPSN
ccccHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccHHHHHHHHHHHHHHHHHHHHcEEccccccccccccccccHHHHHHHHHHHHHcccccccccccccccHHHHHccccccccccEEEEHHHHHHHHHHHHHHHHHHcccHHHHcccccccccc
ccHHHHHHHHHHHHHHHHHHHHHccHHcccccHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHccccHHcccccccccccccccccHHHHHHHHHHHHHHHHHHHHccccccccccccccccHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHcccccccccccHHHHHHHHHHHHHHHHHHccccccHHHHcccccccccc
mckvkilkstqlVCLSDLVTGCVIFVVGGHINPAVTFGLFLARKVSLIRAVAYMVAQCLGAICGVGLVKAFMKHeynslgggantvasgynkgsalgAEIIGTFVLVYTVFsatdpkrsardshvpvlaplpiGFAVFMVHLAtipitgtginparsfgaaviynndkawddhwifwVGPFVGALAAAAYHQYILRAAAIKALgsfrsnpsn
MCKVKILKSTQLVCLSDLVTGCVIFVVGGHINPAVTFGLFLARKVSLIRAVAYMVAQCLGAICGVGLVKAFMKHEYNSLGGGANTVASGYNKGSALGAEIIGTFVLVYTVFSATDPKRSARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARSFGAAVIYNNDKAWDDHWIFWVGPFVGALAAAAYHQYILRAAAIKALGSFRSNPSN
MCKVKILKSTQLVCLSDLVTGCVIFVVGGHINPAVTFGLFLARKVSLIRAVAYMVAQCLGAICGVGLVKAFMKHEYNSLGGGANTVASGYNKGSALGAEIIGTFVLVYTVFSATDPKRSARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARSFGAAVIYNNDKAWDDHWIFWVGPFVGALAAAAYHQYILRAAAIKALGSFRSNPSN
***VKILKSTQLVCLSDLVTGCVIFVVGGHINPAVTFGLFLARKVSLIRAVAYMVAQCLGAICGVGLVKAFMKHEYNSLGGGANTVASGYNKGSALGAEIIGTFVLVYTVFSATD*******SHVPVLAPLPIGFAVFMVHLATIPITGTGINPARSFGAAVIYNNDKAWDDHWIFWVGPFVGALAAAAYHQYILRAAAIKALG********
**KVKILKSTQLVCLSDLVTGCVIFVVGGHINPAVTFGLFLARKVSLIRAVAYMVAQCLGAICGVGLVKAFMKHEYNSLGGGANTVASGYNKGSALGAEIIGTFVLVYTVFSATDPKRSARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARSFGAAVIYNNDKAWDDHWIFWVGPFVGALAAAAYHQYILRA***************
MCKVKILKSTQLVCLSDLVTGCVIFVVGGHINPAVTFGLFLARKVSLIRAVAYMVAQCLGAICGVGLVKAFMKHEYNSLGGGANTVASGYNKGSALGAEIIGTFVLVYTVFSATDPKRSARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARSFGAAVIYNNDKAWDDHWIFWVGPFVGALAAAAYHQYILRAAAIKALGSFRSNPSN
MCKVKILKSTQLVCLSDLVTGCVIFVVGGHINPAVTFGLFLARKVSLIRAVAYMVAQCLGAICGVGLVKAFMKHEYNSLGGGANTVASGYNKGSALGAEIIGTFVLVYTVFSATDPKRSARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARSFGAAVIYNNDKAWDDHWIFWVGPFVGALAAAAYHQYILRAAAIKAL*********
iiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooo
oooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiii
ooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiii
ooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHooooooooooooHHHHHHHHHHHHHHHHHHHHiiiRRRRRRRRRRRRRRiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooo
iiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiii
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MCKVKILKSTQLVCLSDLVTGCVIFVVGGHINPAVTFGLFLARKVSLIRAVAYMVAQCLGAICGVGLVKAFMKHEYNSLGGGANTVASGYNKGSALGAEIIGTFVLVYTVFSATDPKRSARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARSFGAAVIYNNDKAWDDHWIFWVGPFVGALAAAAYHQYILRAAAIKALGSFRSNPSN
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query212 2.2.26 [Sep-21-2011]
Q9ZVX8278 Probable aquaporin PIP2-8 yes no 0.900 0.687 0.905 3e-96
P93004280 Aquaporin PIP2-7 OS=Arabi no no 0.900 0.682 0.879 6e-96
P42767282 Aquaporin PIP-type OS=Atr N/A no 0.900 0.677 0.863 2e-94
Q7XLR1282 Probable aquaporin PIP2-6 yes no 0.900 0.677 0.858 3e-92
Q9ATM4287 Aquaporin PIP2-7 OS=Zea m N/A no 0.886 0.655 0.819 9e-88
Q8H5N9290 Probable aquaporin PIP2-1 no no 0.886 0.648 0.829 5e-87
Q84RL7290 Aquaporin PIP2-1 OS=Zea m N/A no 0.886 0.648 0.824 6e-87
Q9ATM8292 Aquaporin PIP2-2 OS=Zea m N/A no 0.886 0.643 0.808 1e-86
P43287285 Aquaporin PIP2-2 OS=Arabi no no 0.882 0.656 0.812 2e-85
Q9FF53291 Probable aquaporin PIP2-4 no no 0.882 0.642 0.823 4e-85
>sp|Q9ZVX8|PIP28_ARATH Probable aquaporin PIP2-8 OS=Arabidopsis thaliana GN=PIP2-8 PE=1 SV=1 Back     alignment and function desciption
 Score =  350 bits (899), Expect = 3e-96,   Method: Compositional matrix adjust.
 Identities = 173/191 (90%), Positives = 178/191 (93%)

Query: 22  CVIFVVGGHINPAVTFGLFLARKVSLIRAVAYMVAQCLGAICGVGLVKAFMKHEYNSLGG 81
           C   + GGHINPAVTFGLFLARKVSL RAVAYMVAQCLGAICGVGLVKAFM   Y  LGG
Sbjct: 88  CTAGISGGHINPAVTFGLFLARKVSLPRAVAYMVAQCLGAICGVGLVKAFMMTPYKRLGG 147

Query: 82  GANTVASGYNKGSALGAEIIGTFVLVYTVFSATDPKRSARDSHVPVLAPLPIGFAVFMVH 141
           GANTVA GY+ G+ALGAEIIGTFVLVYTVFSATDPKRSARDSHVPVLAPLPIGFAVFMVH
Sbjct: 148 GANTVADGYSTGTALGAEIIGTFVLVYTVFSATDPKRSARDSHVPVLAPLPIGFAVFMVH 207

Query: 142 LATIPITGTGINPARSFGAAVIYNNDKAWDDHWIFWVGPFVGALAAAAYHQYILRAAAIK 201
           LATIPITGTGINPARSFGAAVIYNN+KAWDDHWIFWVGPFVGALAAAAYHQYILRAAAIK
Sbjct: 208 LATIPITGTGINPARSFGAAVIYNNEKAWDDHWIFWVGPFVGALAAAAYHQYILRAAAIK 267

Query: 202 ALGSFRSNPSN 212
           AL SFRSNP+N
Sbjct: 268 ALASFRSNPTN 278
Aquaporins facilitate the transport of water and small neutral solutes across cell membranes.
Arabidopsis thaliana (taxid: 3702)
>sp|P93004|PIP27_ARATH Aquaporin PIP2-7 OS=Arabidopsis thaliana GN=PIP2-7 PE=1 SV=2 Back     alignment and function description
>sp|P42767|PIP1_ATRCA Aquaporin PIP-type OS=Atriplex canescens PE=2 SV=1 Back     alignment and function description
>sp|Q7XLR1|PIP26_ORYSJ Probable aquaporin PIP2-6 OS=Oryza sativa subsp. japonica GN=PIP2-6 PE=2 SV=2 Back     alignment and function description
>sp|Q9ATM4|PIP27_MAIZE Aquaporin PIP2-7 OS=Zea mays GN=PIP2-7 PE=2 SV=1 Back     alignment and function description
>sp|Q8H5N9|PIP21_ORYSJ Probable aquaporin PIP2-1 OS=Oryza sativa subsp. japonica GN=PIP2-1 PE=2 SV=1 Back     alignment and function description
>sp|Q84RL7|PIP21_MAIZE Aquaporin PIP2-1 OS=Zea mays GN=PIP2-1 PE=1 SV=2 Back     alignment and function description
>sp|Q9ATM8|PIP22_MAIZE Aquaporin PIP2-2 OS=Zea mays GN=PIP2-2 PE=2 SV=1 Back     alignment and function description
>sp|P43287|PIP22_ARATH Aquaporin PIP2-2 OS=Arabidopsis thaliana GN=PIP2-2 PE=1 SV=2 Back     alignment and function description
>sp|Q9FF53|PIP24_ARATH Probable aquaporin PIP2-4 OS=Arabidopsis thaliana GN=PIP2-4 PE=1 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query212
256568425278 PIP protein [Gossypium hirsutum] 0.900 0.687 0.947 1e-100
256568423278 PIP protein [Gossypium hirsutum] 0.900 0.687 0.947 1e-100
171190270278 aquaporin PIP2;4 [Gossypium hirsutum] 0.900 0.687 0.942 1e-99
171190268278 aquaporin PIP2;3 [Gossypium hirsutum] 0.900 0.687 0.937 2e-99
300793596270 TPA_inf: aquaporin PIP2;4 [Gossypium hir 0.900 0.707 0.931 8e-99
182408102280 aquaporin [Manihot esculenta] 0.900 0.682 0.926 2e-98
257786549278 plasma membrane aquaporin 2 [Hevea brasi 0.900 0.687 0.937 3e-98
57336892279 putative plasma membrane intrinsic prote 0.900 0.684 0.926 6e-98
224080632279 aquaporin, MIP family, PIP subfamily [Po 0.900 0.684 0.931 8e-98
356507734275 PREDICTED: aquaporin PIP2-7 [Glycine max 0.900 0.694 0.921 9e-98
>gi|256568425|gb|ACU87556.1| PIP protein [Gossypium hirsutum] Back     alignment and taxonomy information
 Score =  369 bits (946), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 181/191 (94%), Positives = 184/191 (96%)

Query: 22  CVIFVVGGHINPAVTFGLFLARKVSLIRAVAYMVAQCLGAICGVGLVKAFMKHEYNSLGG 81
           C   + GGHINPAVTFGLFLARKVSLIRAVAYMVAQCLGAICGVGLVKAFMK EYNSLGG
Sbjct: 88  CTAGISGGHINPAVTFGLFLARKVSLIRAVAYMVAQCLGAICGVGLVKAFMKSEYNSLGG 147

Query: 82  GANTVASGYNKGSALGAEIIGTFVLVYTVFSATDPKRSARDSHVPVLAPLPIGFAVFMVH 141
           G NTVA+GYNKG+ALGAEIIGTFVLVYTVFSATDPKRSARDSHVPVLAPLPIGFAVFMVH
Sbjct: 148 GVNTVATGYNKGTALGAEIIGTFVLVYTVFSATDPKRSARDSHVPVLAPLPIGFAVFMVH 207

Query: 142 LATIPITGTGINPARSFGAAVIYNNDKAWDDHWIFWVGPFVGALAAAAYHQYILRAAAIK 201
           LATIPITGTGINPARSFGAAVIYNNDKAWDDHWIFWVGP VGALAAAAYHQYILRAAAIK
Sbjct: 208 LATIPITGTGINPARSFGAAVIYNNDKAWDDHWIFWVGPMVGALAAAAYHQYILRAAAIK 267

Query: 202 ALGSFRSNPSN 212
           ALGSFRSNPSN
Sbjct: 268 ALGSFRSNPSN 278

Source: Gossypium hirsutum

Species: Gossypium hirsutum

Genus: Gossypium

Family: Malvaceae

Order: Malvales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|256568423|gb|ACU87555.1| PIP protein [Gossypium hirsutum] Back     alignment and taxonomy information
>gi|171190270|gb|ACB42441.1| aquaporin PIP2;4 [Gossypium hirsutum] Back     alignment and taxonomy information
>gi|171190268|gb|ACB42440.1| aquaporin PIP2;3 [Gossypium hirsutum] Back     alignment and taxonomy information
>gi|300793596|tpg|DAA33864.1| TPA_inf: aquaporin PIP2;4 [Gossypium hirsutum] Back     alignment and taxonomy information
>gi|182408102|gb|ACB87734.1| aquaporin [Manihot esculenta] Back     alignment and taxonomy information
>gi|257786549|gb|ACV66986.1| plasma membrane aquaporin 2 [Hevea brasiliensis] Back     alignment and taxonomy information
>gi|57336892|emb|CAH60721.1| putative plasma membrane intrinsic protein [Populus tremula x Populus tremuloides] Back     alignment and taxonomy information
>gi|224080632|ref|XP_002306187.1| aquaporin, MIP family, PIP subfamily [Populus trichocarpa] gi|118487057|gb|ABK95359.1| unknown [Populus trichocarpa] gi|222849151|gb|EEE86698.1| aquaporin, MIP family, PIP subfamily [Populus trichocarpa] Back     alignment and taxonomy information
>gi|356507734|ref|XP_003522619.1| PREDICTED: aquaporin PIP2-7 [Glycine max] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query212
TAIR|locus:2039385278 PIP2;8 "plasma membrane intrin 0.900 0.687 0.905 6.5e-90
TAIR|locus:2131601280 PIP3 "plasma membrane intrinsi 0.900 0.682 0.879 1.4e-89
TAIR|locus:2175831291 PIP2;4 "plasma membrane intrin 0.882 0.642 0.823 1.4e-80
TAIR|locus:2061773285 PIP2B "plasma membrane intrins 0.882 0.656 0.812 2.2e-80
TAIR|locus:2061763285 RD28 "RESPONSIVE TO DESICCATIO 0.882 0.656 0.807 1.2e-79
TAIR|locus:2064885289 PIP2E "plasma membrane intrins 0.882 0.647 0.796 8.7e-79
TAIR|locus:2084031287 PIP2A "plasma membrane intrins 0.882 0.651 0.791 1.8e-78
TAIR|locus:2082642286 PIP2;5 "plasma membrane intrin 0.891 0.660 0.783 4.8e-78
TAIR|locus:2025391286 PIP1C "plasma membrane intrins 0.853 0.632 0.779 2.7e-75
TAIR|locus:2126026287 PIP1;4 "plasma membrane intrin 0.853 0.630 0.773 5.7e-75
TAIR|locus:2039385 PIP2;8 "plasma membrane intrinsic protein 2;8" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 897 (320.8 bits), Expect = 6.5e-90, P = 6.5e-90
 Identities = 173/191 (90%), Positives = 178/191 (93%)

Query:    22 CVIFVVGGHINPAVTFGLFLARKVSLIRAVAYMVAQCLGAICGVGLVKAFMKHEYNSLGG 81
             C   + GGHINPAVTFGLFLARKVSL RAVAYMVAQCLGAICGVGLVKAFM   Y  LGG
Sbjct:    88 CTAGISGGHINPAVTFGLFLARKVSLPRAVAYMVAQCLGAICGVGLVKAFMMTPYKRLGG 147

Query:    82 GANTVASGYNKGSALGAEIIGTFVLVYTVFSATDPKRSARDSHVPVLAPLPIGFAVFMVH 141
             GANTVA GY+ G+ALGAEIIGTFVLVYTVFSATDPKRSARDSHVPVLAPLPIGFAVFMVH
Sbjct:   148 GANTVADGYSTGTALGAEIIGTFVLVYTVFSATDPKRSARDSHVPVLAPLPIGFAVFMVH 207

Query:   142 LATIPITGTGINPARSFGAAVIYNNDKAWDDHWIFWVGPFVGALAAAAYHQYILRAAAIK 201
             LATIPITGTGINPARSFGAAVIYNN+KAWDDHWIFWVGPFVGALAAAAYHQYILRAAAIK
Sbjct:   208 LATIPITGTGINPARSFGAAVIYNNEKAWDDHWIFWVGPFVGALAAAAYHQYILRAAAIK 267

Query:   202 ALGSFRSNPSN 212
             AL SFRSNP+N
Sbjct:   268 ALASFRSNPTN 278
GO:0005215 "transporter activity" evidence=IEA
GO:0005737 "cytoplasm" evidence=ISM
GO:0006810 "transport" evidence=IEA;ISS
GO:0006833 "water transport" evidence=IEA
GO:0015250 "water channel activity" evidence=ISS
GO:0016020 "membrane" evidence=IEA;ISS;IDA
GO:0016021 "integral to membrane" evidence=IEA
GO:0055085 "transmembrane transport" evidence=IEA
GO:0009737 "response to abscisic acid stimulus" evidence=IDA
GO:0005515 "protein binding" evidence=IPI
TAIR|locus:2131601 PIP3 "plasma membrane intrinsic protein 3" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2175831 PIP2;4 "plasma membrane intrinsic protein 2;4" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2061773 PIP2B "plasma membrane intrinsic protein 2" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2061763 RD28 "RESPONSIVE TO DESICCATION 28" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2064885 PIP2E "plasma membrane intrinsic protein 2E" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2084031 PIP2A "plasma membrane intrinsic protein 2A" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2082642 PIP2;5 "plasma membrane intrinsic protein 2;5" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2025391 PIP1C "plasma membrane intrinsic protein 1C" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2126026 PIP1;4 "plasma membrane intrinsic protein 1;4" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
P25794PIP2_PEANo assigned EC number0.71420.85370.6262N/Ano
Q41870PIP11_MAIZENo assigned EC number0.72720.83010.6132N/Ano
Q84RL7PIP21_MAIZENo assigned EC number0.82440.88670.6482N/Ano
Q9AQU5PIP13_MAIZENo assigned EC number0.73480.85370.6198N/Ano
Q9AR14PIP15_MAIZENo assigned EC number0.73480.85370.6284N/Ano
Q9ATM5PIP26_MAIZENo assigned EC number0.76590.88200.6493N/Ano
Q08451PIP1_SOLLCNo assigned EC number0.77270.83010.6153N/Ano
P61838PIP11_VICFANo assigned EC number0.75130.85370.6328N/Ano
P42767PIP1_ATRCANo assigned EC number0.86380.90090.6773N/Ano
Q9ATN0PIP16_MAIZENo assigned EC number0.72920.85370.6114N/Ano
Q9XF59PIP12_MAIZENo assigned EC number0.72920.85370.6262N/Ano
Q9XF58PIP25_MAIZENo assigned EC number0.81280.87730.6526N/Ano
Q9ZVX8PIP28_ARATHNo assigned EC number0.90570.90090.6870yesno
Q9ATM4PIP27_MAIZENo assigned EC number0.81910.88670.6550N/Ano
Q7XLR1PIP26_ORYSJNo assigned EC number0.85860.90090.6773yesno
Q9ATM6PIP24_MAIZENo assigned EC number0.79780.88200.6493N/Ano
Q9ATM7PIP23_MAIZENo assigned EC number0.79780.88200.6470N/Ano
Q9ATM8PIP22_MAIZENo assigned EC number0.80850.88670.6438N/Ano

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
grail3.0045020302
SubName- Full=Putative uncharacterized protein; (279 aa)
(Populus trichocarpa)
Predicted Functional Partners:
 
Sorry, there are no predicted associations at the current settings.
 

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query212
pfam00230218 pfam00230, MIP, Major intrinsic protein 2e-70
cd00333228 cd00333, MIP, Major intrinsic protein (MIP) superf 3e-60
TIGR00861216 TIGR00861, MIP, MIP family channel proteins 2e-52
COG0580241 COG0580, GlpF, Glycerol uptake facilitator and rel 5e-35
PLN00027252 PLN00027, PLN00027, aquaporin TIP; Provisional 2e-30
PLN00166250 PLN00166, PLN00166, aquaporin TIP2; Provisional 5e-26
PRK05420231 PRK05420, PRK05420, aquaporin Z; Provisional 6e-26
PLN00167256 PLN00167, PLN00167, aquaporin TIP5; Provisional 1e-19
PTZ00016294 PTZ00016, PTZ00016, aquaglyceroporin; Provisional 2e-15
PLN00182283 PLN00182, PLN00182, putative aquaporin NIP4; Provi 1e-13
PLN00026298 PLN00026, PLN00026, aquaporin NIP; Provisional 2e-13
PLN00184296 PLN00184, PLN00184, aquaporin NIP1; Provisional 4e-13
PLN00183274 PLN00183, PLN00183, putative aquaporin NIP7; Provi 3e-11
>gnl|CDD|215807 pfam00230, MIP, Major intrinsic protein Back     alignment and domain information 
 Score =  213 bits (545), Expect = 2e-70
 Identities = 88/170 (51%), Positives = 109/170 (64%), Gaps = 7/170 (4%)

Query: 22  CVIFVVGGHINPAVTFGLFLARKVSLIRAVAYMVAQCLGAICGVGLVKAFMKHEYNSLGG 81
           C   + G H+NPAVTF L + R++SL+RA+ Y++AQ LGAICG  L+K          GG
Sbjct: 56  CTGHISGAHLNPAVTFALLVGRRISLLRAIYYIIAQLLGAICGAALLKGVTN-GLQRAGG 114

Query: 82  GANTVASGYNKGSALGAEIIGTFVLVYTVFSATDPKRSARDSHVPVLAPLPIGFAVFMVH 141
            AN++A G N G A   EII TF LVYTVF+ TD  R+    HV   APL IGFAVF+ H
Sbjct: 115 FANSLAPGVNAGQAFVVEIILTFQLVYTVFATTDDPRNGSLGHV---APLAIGFAVFLNH 171

Query: 142 LATIPITGTGINPARSFGAAVIYNNDKAWDDHWIFWVGPFVGALAAAAYH 191
           LA  P TG  +NPARSFG AV+      WDDHW++WVGP +GA  AA  +
Sbjct: 172 LAGGPYTGASMNPARSFGPAVVLWK---WDDHWVYWVGPLIGAALAALVY 218

MIP (Major Intrinsic Protein) family proteins exhibit essentially two distinct types of channel properties: (1) specific water transport by the aquaporins, and (2) small neutral solutes transport, such as glycerol by the glycerol facilitators. Length = 218
>gnl|CDD|238204 cd00333, MIP, Major intrinsic protein (MIP) superfamily Back     alignment and domain information
>gnl|CDD|233156 TIGR00861, MIP, MIP family channel proteins Back     alignment and domain information
>gnl|CDD|223653 COG0580, GlpF, Glycerol uptake facilitator and related permeases (Major Intrinsic Protein Family) [Carbohydrate transport and metabolism] Back     alignment and domain information
>gnl|CDD|177664 PLN00027, PLN00027, aquaporin TIP; Provisional Back     alignment and domain information
>gnl|CDD|165733 PLN00166, PLN00166, aquaporin TIP2; Provisional Back     alignment and domain information
>gnl|CDD|235453 PRK05420, PRK05420, aquaporin Z; Provisional Back     alignment and domain information
>gnl|CDD|215085 PLN00167, PLN00167, aquaporin TIP5; Provisional Back     alignment and domain information
>gnl|CDD|240230 PTZ00016, PTZ00016, aquaglyceroporin; Provisional Back     alignment and domain information
>gnl|CDD|165748 PLN00182, PLN00182, putative aquaporin NIP4; Provisional Back     alignment and domain information
>gnl|CDD|177663 PLN00026, PLN00026, aquaporin NIP; Provisional Back     alignment and domain information
>gnl|CDD|177778 PLN00184, PLN00184, aquaporin NIP1; Provisional Back     alignment and domain information
>gnl|CDD|215092 PLN00183, PLN00183, putative aquaporin NIP7; Provisional Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 212
KOG0223238 consensus Aquaporin (major intrinsic protein famil 100.0
KOG0224316 consensus Aquaporin (major intrinsic protein famil 100.0
PLN00184296 aquaporin NIP1; Provisional 100.0
PF00230227 MIP: Major intrinsic protein; InterPro: IPR000425 100.0
COG0580241 GlpF Glycerol uptake facilitator and related perme 100.0
PTZ00016294 aquaglyceroporin; Provisional 100.0
PRK05420231 aquaporin Z; Provisional 100.0
PLN00026298 aquaporin NIP; Provisional 100.0
PLN00166250 aquaporin TIP2; Provisional 100.0
PLN00182283 putative aquaporin NIP4; Provisional 100.0
PLN00027252 aquaporin TIP; Provisional 100.0
PLN00167256 aquaporin TIP5; Provisional 100.0
cd00333228 MIP Major intrinsic protein (MIP) superfamily. Mem 100.0
PLN00183274 putative aquaporin NIP7; Provisional 100.0
TIGR00861216 MIP MIP family channel proteins. processes. Some m 100.0
PLN00184 296 aquaporin NIP1; Provisional 99.77
PLN00026 298 aquaporin NIP; Provisional 99.77
PLN00183 274 putative aquaporin NIP7; Provisional 99.72
PLN00182 283 putative aquaporin NIP4; Provisional 99.69
PLN00166 250 aquaporin TIP2; Provisional 99.69
PLN00167 256 aquaporin TIP5; Provisional 99.69
PTZ00016 294 aquaglyceroporin; Provisional 99.68
PRK05420 231 aquaporin Z; Provisional 99.66
cd00333 228 MIP Major intrinsic protein (MIP) superfamily. Mem 99.66
PLN00027 252 aquaporin TIP; Provisional 99.64
KOG0224 316 consensus Aquaporin (major intrinsic protein famil 99.62
KOG0223 238 consensus Aquaporin (major intrinsic protein famil 99.6
COG0580 241 GlpF Glycerol uptake facilitator and related perme 99.59
TIGR00861216 MIP MIP family channel proteins. processes. Some m 99.57
PF00230227 MIP: Major intrinsic protein; InterPro: IPR000425 99.5
PRK11562268 nitrite transporter NirC; Provisional 83.82
>KOG0223 consensus Aquaporin (major intrinsic protein family) [Carbohydrate transport and metabolism] Back     alignment and domain information 
Probab=100.00  E-value=5.8e-44  Score=295.05  Aligned_cols=177  Identities=49%  Similarity=0.803  Sum_probs=159.7

Q ss_pred             HHHHHhhcccccccccchHHHHHHHHhcCCchhHHHHHHHHHhHHHHHHHHHHHHHhhhhhhhcCCCccccCCCCchhhH
Q 028174           16 SDLVTGCVIFVVGGHINPAVTFGLFLARKVSLIRAVAYMVAQCLGAICGVGLVKAFMKHEYNSLGGGANTVASGYNKGSA   95 (212)
Q Consensus        16 ~~~~~~~~~~iSGaH~NPaVTla~~~~g~~~~~~~~~yi~aQ~~Ga~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   95 (212)
                      ...+.+++|+|||||+|||||+++++.|++++.+++.|+.+|++|+++|+.+++.+.+...+......+.+.++.+.+|+
T Consensus        55 v~v~i~~~g~iSGaH~NPAVT~a~~~~~~isl~~~~~Y~vaQ~lGa~~g~~~l~~~~~~~~~~~~~~~~~~~~~~~~~q~  134 (238)
T KOG0223|consen   55 VFVLVYSTGHISGAHFNPAVTLAFAVGGKISLFRAVAYIVAQLLGAIAGAALLKVVTPGQYNRKGLGLTGLAPGLSTGQG  134 (238)
T ss_pred             HHHHHhhhccccccccCHHHHHHHHHhCCCcHHHhHHHHHHHHHHHHHHHHHHheecCcccccCCcceeccCCCCCcchh
Confidence            45566788999999999999999999999999999999999999999999999999988644444556677889999999


Q ss_pred             HHHHHHHHHHHHHHHHH-hccCCCCCCCCCCCCchhHHHHHHHHHHHHHhhCCCCCCCcchhhHHHHHHhcCCCCCCcce
Q 028174           96 LGAEIIGTFVLVYTVFS-ATDPKRSARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARSFGAAVIYNNDKAWDDHW  174 (212)
Q Consensus        96 ~~~E~~~T~ilv~~v~~-~~~~~~~~~~~~~~~~~~~~ig~~v~~~~~~~~~~sG~~lNPA~~lg~~l~~~~~~~~~~~~  174 (212)
                      ++.|++.||.|++++++ .+|+++.       .+.|+.+|+++.+.+++.+++||++|||||+|||++..+   .|+++|
T Consensus       135 ~~~E~ilTf~Lv~~v~~~a~d~~~~-------~~a~l~IG~~v~~~~l~~g~~TG~sMNPArSfGpAvv~~---~w~~hw  204 (238)
T KOG0223|consen  135 LVIEIILTFILVFTVFATATDPRRS-------ELAPLAIGFSVGLNILAAGPFTGASMNPARSFGPAVVYG---SWDDHW  204 (238)
T ss_pred             HHHHHHHHHHHhheeEEEeecCCCc-------ccHHHHHHHHHHHHHHeecCcCcCccCcHHHhhHHHHhc---CCCcEE
Confidence            99999999999999998 6676654       478999999999999999999999999999999999986   599999


Q ss_pred             ehhhhhHHHHHHHHHHHHHHcchhhhhh
Q 028174          175 IFWVGPFVGALAAAAYHQYILRAAAIKA  202 (212)
Q Consensus       175 vy~v~p~lGaila~ll~~~l~~~~~~~~  202 (212)
                      +||++|++|+++++++|+.++.+++.|+
T Consensus       205 iYwvgP~~Ga~~a~~~y~~v~~~~~~~~  232 (238)
T KOG0223|consen  205 IYWVGPLLGAILAALIYRLVFIPDESEP  232 (238)
T ss_pred             EEEhhHHHHHHHHHHHHHHhccCccccc
Confidence            9999999999999999999998874433

>KOG0224 consensus Aquaporin (major intrinsic protein family) [Carbohydrate transport and metabolism] Back     alignment and domain information
>PLN00184 aquaporin NIP1; Provisional Back     alignment and domain information
>PF00230 MIP: Major intrinsic protein; InterPro: IPR000425 A number of transmembrane (TM) channel proteins can be grouped together on the basis of sequence similarities [, , , , ] Back     alignment and domain information
>COG0580 GlpF Glycerol uptake facilitator and related permeases (Major Intrinsic Protein Family) [Carbohydrate transport and metabolism] Back     alignment and domain information
>PTZ00016 aquaglyceroporin; Provisional Back     alignment and domain information
>PRK05420 aquaporin Z; Provisional Back     alignment and domain information
>PLN00026 aquaporin NIP; Provisional Back     alignment and domain information
>PLN00166 aquaporin TIP2; Provisional Back     alignment and domain information
>PLN00182 putative aquaporin NIP4; Provisional Back     alignment and domain information
>PLN00027 aquaporin TIP; Provisional Back     alignment and domain information
>PLN00167 aquaporin TIP5; Provisional Back     alignment and domain information
>cd00333 MIP Major intrinsic protein (MIP) superfamily Back     alignment and domain information
>PLN00183 putative aquaporin NIP7; Provisional Back     alignment and domain information
>TIGR00861 MIP MIP family channel proteins Back     alignment and domain information
>PLN00184 aquaporin NIP1; Provisional Back     alignment and domain information
>PLN00026 aquaporin NIP; Provisional Back     alignment and domain information
>PLN00183 putative aquaporin NIP7; Provisional Back     alignment and domain information
>PLN00182 putative aquaporin NIP4; Provisional Back     alignment and domain information
>PLN00166 aquaporin TIP2; Provisional Back     alignment and domain information
>PLN00167 aquaporin TIP5; Provisional Back     alignment and domain information
>PTZ00016 aquaglyceroporin; Provisional Back     alignment and domain information
>PRK05420 aquaporin Z; Provisional Back     alignment and domain information
>cd00333 MIP Major intrinsic protein (MIP) superfamily Back     alignment and domain information
>PLN00027 aquaporin TIP; Provisional Back     alignment and domain information
>KOG0224 consensus Aquaporin (major intrinsic protein family) [Carbohydrate transport and metabolism] Back     alignment and domain information
>KOG0223 consensus Aquaporin (major intrinsic protein family) [Carbohydrate transport and metabolism] Back     alignment and domain information
>COG0580 GlpF Glycerol uptake facilitator and related permeases (Major Intrinsic Protein Family) [Carbohydrate transport and metabolism] Back     alignment and domain information
>TIGR00861 MIP MIP family channel proteins Back     alignment and domain information
>PF00230 MIP: Major intrinsic protein; InterPro: IPR000425 A number of transmembrane (TM) channel proteins can be grouped together on the basis of sequence similarities [, , , , ] Back     alignment and domain information
>PRK11562 nitrite transporter NirC; Provisional Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query212
2b5f_A303 Crystal Structure Of The Spinach Aquaporin Sopip2;1 3e-95
1z98_A281 Crystal Structure Of The Spinach Aquaporin Sopip2;1 7e-95
3cll_A300 Crystal Structure Of The Spinach Aquaporin Sopip2;1 2e-94
3cn6_A304 Crystal Structure Of The Spinach Aquaporin Sopip2;1 2e-94
3cn5_A304 Crystal Structure Of The Spinach Aquaporin Sopip2;1 5e-94
1j4n_A271 Crystal Structure Of The Aqp1 Water Channel Length 1e-35
1fqy_A269 Structure Of Aquaporin-1 At 3.8 A Resolution By Ele 1e-34
3iyz_A340 Structure Of Aquaporin-4 S180d Mutant At 10.0 A Res 5e-33
2d57_A301 Double Layered 2d Crystal Structure Of Aquaporin-4 6e-33
2zz9_A301 Structure Of Aquaporin-4 S180d Mutant At 2.8 A Reso 6e-33
3gd8_A223 Crystal Structure Of Human Aquaporin 4 At 1.8 And I 4e-31
3d9s_A266 Human Aquaporin 5 (Aqp5) - High Resolution X-Ray St 3e-26
1ymg_A263 The Channel Architecture Of Aquaporin O At 2.2 Angs 1e-23
2b6o_A263 Electron Crystallographic Structure Of Lens Aquapor 6e-23
1sor_A235 Aquaporin-0 Membrane Junctions Reveal The Structure 7e-23
3m9i_A220 Electron Crystallographic Structure Of Lens Aquapor 1e-22
2w1p_A279 1.4 Angstrom Crystal Structure Of P.Pastoris Aquapo 2e-15
2evu_A246 Crystal Structure Of Aquaporin Aqpm At 2.3a Resolut 9e-15
1rc2_B231 2.5 Angstrom Resolution X-Ray Structure Of Aquapori 6e-14
3nk5_A234 Crystal Structure Of Aqpz Mutant F43w Length = 234 6e-14
2o9f_A234 Crystal Structure Of Aqpz Mutant L170c Length = 234 1e-13
3ne2_A246 Archaeoglobus Fulgidus Aquaporin Length = 246 3e-13
2o9e_A234 Crystal Structure Of Aqpz Mutant T183c Complexed Wi 3e-13
2o9d_A234 Crystal Structure Of Aqpz Mutant T183c. Length = 23 4e-13
3llq_A256 Aquaporin Structure From Plant Pathogen Agrobacteri 6e-12
3nka_A234 Crystal Structure Of Aqpz H174g,T183f Length = 234 6e-12
3nkc_A234 Crystal Structure Of Aqpz F43w,H174g,T183f Length = 7e-12
1ldf_A281 Crystal Structure Of The E. Coli Glycerol Facilitat 8e-09
1fx8_A281 Crystal Structure Of The E. Coli Glycerol Facilitat 5e-08
>pdb|2B5F|A Chain A, Crystal Structure Of The Spinach Aquaporin Sopip2;1 In An Open Conformation To 3.9 Resolution Length = 303 Back     alignment and structure 
Iteration: 1

 Score =  343 bits (881), Expect = 3e-95,   Method: Compositional matrix adjust.
 Identities = 164/191 (85%), Positives = 177/191 (92%)
Query: 22  CVIFVVGGHINPAVTFGLFLARKVSLIRAVAYMVAQCLGAICGVGLVKAFMKHEYNSLGG 81
           C   + GGHINPAVTFGLFLARKVSL+RA+ YM+AQCLGAICGVGLVKAFMK  YN  GG
Sbjct: 91  CTAGISGGHINPAVTFGLFLARKVSLLRALVYMIAQCLGAICGVGLVKAFMKGPYNQFGG 150
Query: 82  GANTVASGYNKGSALGAEIIGTFVLVYTVFSATDPKRSARDSHVPVLAPLPIGFAVFMVH 141
           GAN+VA GYNKG+ALGAEIIGTFVLVYTVFSATDPKRSARDSHVP+LAPLPIGFAVFMVH
Sbjct: 151 GANSVALGYNKGTALGAEIIGTFVLVYTVFSATDPKRSARDSHVPILAPLPIGFAVFMVH 210
Query: 142 LATIPITGTGINPARSFGAAVIYNNDKAWDDHWIFWVGPFVGALAAAAYHQYILRAAAIK 201
           LATIPITGTGINPARSFGAAVI+N++K WDD WIFWVGPF+GA  AAAYHQY+LRAAAIK
Sbjct: 211 LATIPITGTGINPARSFGAAVIFNSNKVWDDQWIFWVGPFIGAAVAAAYHQYVLRAAAIK 270
Query: 202 ALGSFRSNPSN 212
           ALGSFRSNP+N
Sbjct: 271 ALGSFRSNPTN 281
>pdb|1Z98|A Chain A, Crystal Structure Of The Spinach Aquaporin Sopip2;1 In A Closed Conformation Length = 281 Back     alignment and structure
>pdb|3CLL|A Chain A, Crystal Structure Of The Spinach Aquaporin Sopip2;1 S115e Mutant Length = 300 Back     alignment and structure
>pdb|3CN6|A Chain A, Crystal Structure Of The Spinach Aquaporin Sopip2;1 S274e Mutant Length = 304 Back     alignment and structure
>pdb|3CN5|A Chain A, Crystal Structure Of The Spinach Aquaporin Sopip2;1 S115e, S274e Mutant Length = 304 Back     alignment and structure
>pdb|1J4N|A Chain A, Crystal Structure Of The Aqp1 Water Channel Length = 271 Back     alignment and structure
>pdb|1FQY|A Chain A, Structure Of Aquaporin-1 At 3.8 A Resolution By Electron Crystallography Length = 269 Back     alignment and structure
>pdb|3IYZ|A Chain A, Structure Of Aquaporin-4 S180d Mutant At 10.0 A Resolution From Electron Micrograph Length = 340 Back     alignment and structure
>pdb|2D57|A Chain A, Double Layered 2d Crystal Structure Of Aquaporin-4 (Aqp4m23) At 3.2 A Resolution By Electron Crystallography Length = 301 Back     alignment and structure
>pdb|2ZZ9|A Chain A, Structure Of Aquaporin-4 S180d Mutant At 2.8 A Resolution By Electron Crystallography Length = 301 Back     alignment and structure
>pdb|3GD8|A Chain A, Crystal Structure Of Human Aquaporin 4 At 1.8 And Its Mechanism Of Conductance Length = 223 Back     alignment and structure
>pdb|3D9S|A Chain A, Human Aquaporin 5 (Aqp5) - High Resolution X-Ray Structure Length = 266 Back     alignment and structure
>pdb|1YMG|A Chain A, The Channel Architecture Of Aquaporin O At 2.2 Angstrom Resolution Length = 263 Back     alignment and structure
>pdb|2B6O|A Chain A, Electron Crystallographic Structure Of Lens Aquaporin-0 (Aqp0) (Lens Mip) At 1.9a Resolution, In A Closed Pore State Length = 263 Back     alignment and structure
>pdb|1SOR|A Chain A, Aquaporin-0 Membrane Junctions Reveal The Structure Of A Closed Water Pore Length = 235 Back     alignment and structure
>pdb|3M9I|A Chain A, Electron Crystallographic Structure Of Lens Aquaporin-0 (Aqp Mip) In E. Coli Polar Lipids Length = 220 Back     alignment and structure
>pdb|2W1P|A Chain A, 1.4 Angstrom Crystal Structure Of P.Pastoris Aquaporin, Aqy1, In A Closed Conformation At Ph 8.0 Length = 279 Back     alignment and structure
>pdb|2EVU|A Chain A, Crystal Structure Of Aquaporin Aqpm At 2.3a Resolution Length = 246 Back     alignment and structure
>pdb|1RC2|B Chain B, 2.5 Angstrom Resolution X-Ray Structure Of Aquaporin Z Length = 231 Back     alignment and structure
>pdb|3NK5|A Chain A, Crystal Structure Of Aqpz Mutant F43w Length = 234 Back     alignment and structure
>pdb|2O9F|A Chain A, Crystal Structure Of Aqpz Mutant L170c Length = 234 Back     alignment and structure
>pdb|3NE2|A Chain A, Archaeoglobus Fulgidus Aquaporin Length = 246 Back     alignment and structure
>pdb|2O9E|A Chain A, Crystal Structure Of Aqpz Mutant T183c Complexed With Mercury Length = 234 Back     alignment and structure
>pdb|2O9D|A Chain A, Crystal Structure Of Aqpz Mutant T183c. Length = 234 Back     alignment and structure
>pdb|3LLQ|A Chain A, Aquaporin Structure From Plant Pathogen Agrobacterium Tumerfaciens Length = 256 Back     alignment and structure
>pdb|3NKA|A Chain A, Crystal Structure Of Aqpz H174g,T183f Length = 234 Back     alignment and structure
>pdb|3NKC|A Chain A, Crystal Structure Of Aqpz F43w,H174g,T183f Length = 234 Back     alignment and structure
>pdb|1LDF|A Chain A, Crystal Structure Of The E. Coli Glycerol Facilitator (Glpf) Mutation W48f, F200t Length = 281 Back     alignment and structure
>pdb|1FX8|A Chain A, Crystal Structure Of The E. Coli Glycerol Facilitator (Glpf) With Substrate Glycerol Length = 281 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query212
3cn5_A304 Aquaporin; membrane protein, transmembrane, transp 1e-100
3cn5_A 304 Aquaporin; membrane protein, transmembrane, transp 1e-04
3iyz_A340 Aquaporin-4; water transport, water channel, two-d 2e-76
3iyz_A 340 Aquaporin-4; water transport, water channel, two-d 6e-05
1j4n_A271 Aquaporin 1; membrane protein, channel protein, tr 2e-75
1j4n_A 271 Aquaporin 1; membrane protein, channel protein, tr 2e-04
2zz9_A301 Aquaporin-4; water transport, water channel, two-d 2e-75
2zz9_A 301 Aquaporin-4; water transport, water channel, two-d 1e-04
3d9s_A266 Aquaporin-5, AQP-5; aquaglyceroporin, membrane pro 1e-74
3d9s_A 266 Aquaporin-5, AQP-5; aquaglyceroporin, membrane pro 2e-04
2b6o_A263 Aquaporin-0, lens fiber major intrinsic protein; a 4e-74
2b6o_A 263 Aquaporin-0, lens fiber major intrinsic protein; a 5e-04
3gd8_A223 Aquaporin-4; proton exclusion, structural genomics 6e-73
2o9g_A234 Aquaporin Z; integral membrane protein, structural 1e-72
3llq_A256 Aquaporin Z 2; aquaporin tetramer, membrane protei 4e-71
3llq_A 256 Aquaporin Z 2; aquaporin tetramer, membrane protei 5e-05
2w2e_A279 AQY1, aquaporin, aquaporin PIP2-7 7; yeast, gating 4e-71
2w2e_A 279 AQY1, aquaporin, aquaporin PIP2-7 7; yeast, gating 4e-04
2f2b_A246 Aquaporin AQPM; protein, integral membrane protein 4e-59
2f2b_A 246 Aquaporin AQPM; protein, integral membrane protein 4e-04
1ldf_A281 Glycerol uptake facilitator protein; glycerol-cond 1e-37
3c02_A258 Aquaglyceroporin; membrane protein, glycerol, wate 5e-37
>3cn5_A Aquaporin; membrane protein, transmembrane, transport, transport protein; 2.05A {Spinacia oleracea} PDB: 3cn6_A 3cll_A 1z98_A 2b5f_A Length = 304 Back     alignment and structure
 Score =  291 bits (748), Expect = e-100
 Identities = 161/185 (87%), Positives = 173/185 (93%)

Query: 28  GGHINPAVTFGLFLARKVSLIRAVAYMVAQCLGAICGVGLVKAFMKHEYNSLGGGANTVA 87
           GGHINPAVTFGLFLARKV L+RA+ YM+AQCLGAICGVGLVKAFMK  YN  GGGAN+VA
Sbjct: 120 GGHINPAVTFGLFLARKVELLRALVYMIAQCLGAICGVGLVKAFMKGPYNQFGGGANSVA 179

Query: 88  SGYNKGSALGAEIIGTFVLVYTVFSATDPKRSARDSHVPVLAPLPIGFAVFMVHLATIPI 147
            GYNKG+ALGAEIIGTFVLVYTVFSATDPKRSARDSHVP+LAPLPIGFAVFMVHLATIPI
Sbjct: 180 LGYNKGTALGAEIIGTFVLVYTVFSATDPKRSARDSHVPILAPLPIGFAVFMVHLATIPI 239

Query: 148 TGTGINPARSFGAAVIYNNDKAWDDHWIFWVGPFVGALAAAAYHQYILRAAAIKALGSFR 207
           TGTGINPARSFGAAVI+N++K WDD WIFWVGPF+GA  AAAYHQY+LRAAAIKALG FR
Sbjct: 240 TGTGINPARSFGAAVIFNSNKVWDDQWIFWVGPFIGAAVAAAYHQYVLRAAAIKALGEFR 299

Query: 208 SNPSN 212
           SNP+N
Sbjct: 300 SNPTN 304
>3cn5_A Aquaporin; membrane protein, transmembrane, transport, transport protein; 2.05A {Spinacia oleracea} PDB: 3cn6_A 3cll_A 1z98_A 2b5f_A Length = 304 Back     alignment and structure
>3iyz_A Aquaporin-4; water transport, water channel, two-dimensional C membrane protein, baculovirus expression system, glycoprote membrane; 10.00A {Rattus norvegicus} Length = 340 Back     alignment and structure
>3iyz_A Aquaporin-4; water transport, water channel, two-dimensional C membrane protein, baculovirus expression system, glycoprote membrane; 10.00A {Rattus norvegicus} Length = 340 Back     alignment and structure
>1j4n_A Aquaporin 1; membrane protein, channel protein, transmembrane helices; HET: BNG; 2.20A {Bos taurus} SCOP: f.19.1.1 PDB: 1h6i_A 1fqy_A 1ih5_A Length = 271 Back     alignment and structure
>1j4n_A Aquaporin 1; membrane protein, channel protein, transmembrane helices; HET: BNG; 2.20A {Bos taurus} SCOP: f.19.1.1 PDB: 1h6i_A 1fqy_A 1ih5_A Length = 271 Back     alignment and structure
>2zz9_A Aquaporin-4; water transport, water channel, two-dimensional crystal, electron diffraction, electron microscopy, membrane protein; HET: PEE; 2.80A {Rattus norvegicus} PDB: 2d57_A Length = 301 Back     alignment and structure
>2zz9_A Aquaporin-4; water transport, water channel, two-dimensional crystal, electron diffraction, electron microscopy, membrane protein; HET: PEE; 2.80A {Rattus norvegicus} PDB: 2d57_A Length = 301 Back     alignment and structure
>3d9s_A Aquaporin-5, AQP-5; aquaglyceroporin, membrane protein, water transport, X-RAY diffraction, lipid, phosphatidylserine, PSF, NPA, AR/R, water channel; HET: PS6; 2.00A {Homo sapiens} Length = 266 Back     alignment and structure
>3d9s_A Aquaporin-5, AQP-5; aquaglyceroporin, membrane protein, water transport, X-RAY diffraction, lipid, phosphatidylserine, PSF, NPA, AR/R, water channel; HET: PS6; 2.00A {Homo sapiens} Length = 266 Back     alignment and structure
>2b6o_A Aquaporin-0, lens fiber major intrinsic protein; aquaporin-0 junctions, AQP0, lens MIP, lipid-protein interac membrane, lipid bilayer; HET: MC3; 1.90A {Ovis aries} SCOP: f.19.1.1 PDB: 1ymg_A* 2b6p_A 2c32_A 1sor_A 3m9i_A* Length = 263 Back     alignment and structure
>2b6o_A Aquaporin-0, lens fiber major intrinsic protein; aquaporin-0 junctions, AQP0, lens MIP, lipid-protein interac membrane, lipid bilayer; HET: MC3; 1.90A {Ovis aries} SCOP: f.19.1.1 PDB: 1ymg_A* 2b6p_A 2c32_A 1sor_A 3m9i_A* Length = 263 Back     alignment and structure
>3gd8_A Aquaporin-4; proton exclusion, structural genomics protein structure initiative, center for structures of MEMB proteins, CSMP, glycoprotein; HET: BOG; 1.80A {Homo sapiens} Length = 223 Back     alignment and structure
>2o9g_A Aquaporin Z; integral membrane protein, structural genomics, P protein structure initiative, center for structures of MEMB proteins, CSMP; HET: BOG; 1.90A {Escherichia coli} PDB: 2o9f_A* 2o9d_A* 2o9e_A 1rc2_B* 2abm_A* 3nk5_A* 3nka_A* 3nkc_A* Length = 234 Back     alignment and structure
>3llq_A Aquaporin Z 2; aquaporin tetramer, membrane protein, water channel, structu genomics, PSI-2, protein structure initiative; 2.01A {Agrobacterium tumefaciens str} Length = 256 Back     alignment and structure
>3llq_A Aquaporin Z 2; aquaporin tetramer, membrane protein, water channel, structu genomics, PSI-2, protein structure initiative; 2.01A {Agrobacterium tumefaciens str} Length = 256 Back     alignment and structure
>2w2e_A AQY1, aquaporin, aquaporin PIP2-7 7; yeast, gating, membrane protein; HET: BOG; 1.15A {Komagataella pastoris} PDB: 2w1p_A* Length = 279 Back     alignment and structure
>2w2e_A AQY1, aquaporin, aquaporin PIP2-7 7; yeast, gating, membrane protein; HET: BOG; 1.15A {Komagataella pastoris} PDB: 2w1p_A* Length = 279 Back     alignment and structure
>2f2b_A Aquaporin AQPM; protein, integral membrane protein, channel, structural GENO PSI-2, protein structure initiative; 1.68A {Methanothermobacter marburgensis str} PDB: 2evu_A 3ne2_A* Length = 246 Back     alignment and structure
>2f2b_A Aquaporin AQPM; protein, integral membrane protein, channel, structural GENO PSI-2, protein structure initiative; 1.68A {Methanothermobacter marburgensis str} PDB: 2evu_A 3ne2_A* Length = 246 Back     alignment and structure
>1ldf_A Glycerol uptake facilitator protein; glycerol-conducting membrane channel protein, transport PROT; HET: BOG; 2.10A {Escherichia coli} SCOP: f.19.1.1 PDB: 1fx8_A* 1lda_A* 1ldi_A* Length = 281 Back     alignment and structure
>3c02_A Aquaglyceroporin; membrane protein, glycerol, water, transport, structural GEN PSI-2, protein structure initiative; HET: BOG; 2.05A {Plasmodium falciparum} Length = 258 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query212
3cn5_A304 Aquaporin; membrane protein, transmembrane, transp 100.0
3gd8_A223 Aquaporin-4; proton exclusion, structural genomics 100.0
3iyz_A340 Aquaporin-4; water transport, water channel, two-d 100.0
2f2b_A246 Aquaporin AQPM; protein, integral membrane protein 100.0
2zz9_A301 Aquaporin-4; water transport, water channel, two-d 100.0
3d9s_A266 Aquaporin-5, AQP-5; aquaglyceroporin, membrane pro 100.0
2w2e_A279 AQY1, aquaporin, aquaporin PIP2-7 7; yeast, gating 100.0
2o9g_A234 Aquaporin Z; integral membrane protein, structural 100.0
2b6o_A263 Aquaporin-0, lens fiber major intrinsic protein; a 100.0
1j4n_A271 Aquaporin 1; membrane protein, channel protein, tr 100.0
1ldf_A281 Glycerol uptake facilitator protein; glycerol-cond 100.0
3c02_A258 Aquaglyceroporin; membrane protein, glycerol, wate 100.0
3llq_A256 Aquaporin Z 2; aquaporin tetramer, membrane protei 100.0
2b6o_A 263 Aquaporin-0, lens fiber major intrinsic protein; a 99.71
3gd8_A223 Aquaporin-4; proton exclusion, structural genomics 99.68
3d9s_A 266 Aquaporin-5, AQP-5; aquaglyceroporin, membrane pro 99.67
2zz9_A 301 Aquaporin-4; water transport, water channel, two-d 99.66
3llq_A 256 Aquaporin Z 2; aquaporin tetramer, membrane protei 99.66
3c02_A 258 Aquaglyceroporin; membrane protein, glycerol, wate 99.65
1j4n_A 271 Aquaporin 1; membrane protein, channel protein, tr 99.65
2f2b_A 246 Aquaporin AQPM; protein, integral membrane protein 99.64
1ldf_A 281 Glycerol uptake facilitator protein; glycerol-cond 99.64
2o9g_A 234 Aquaporin Z; integral membrane protein, structural 99.64
3iyz_A 340 Aquaporin-4; water transport, water channel, two-d 99.63
3cn5_A 304 Aquaporin; membrane protein, transmembrane, transp 99.62
2w2e_A 279 AQY1, aquaporin, aquaporin PIP2-7 7; yeast, gating 99.6
>3cn5_A Aquaporin; membrane protein, transmembrane, transport, transport protein; 2.05A {Spinacia oleracea} PDB: 3cn6_A 3cll_A 1z98_A 2b5f_A Back     alignment and structure
Probab=100.00  E-value=1.3e-46  Score=321.38  Aligned_cols=195  Identities=83%  Similarity=1.371  Sum_probs=159.4

Q ss_pred             HHHhhcccccccccchHHHHHHHHhcCCchhHHHHHHHHHhHHHHHHHHHHHHHhhhhhhhcCCCccccCCCCchhhHHH
Q 028174           18 LVTGCVIFVVGGHINPAVTFGLFLARKVSLIRAVAYMVAQCLGAICGVGLVKAFMKHEYNSLGGGANTVASGYNKGSALG   97 (212)
Q Consensus        18 ~~~~~~~~iSGaH~NPaVTla~~~~g~~~~~~~~~yi~aQ~~Ga~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   97 (212)
                      +.+.++++|||||+|||||+++++.|+++|++++.|+++|++||++|+.++|.++++.++..+.+.+.+.++.+.+++++
T Consensus       110 ~~v~~~g~iSGaHlNPAVTla~~l~g~~~~~~~~~YiiAQ~lGAi~Ga~lv~~~~~~~~~~~~~g~~~~~~~~s~~~~f~  189 (304)
T 3cn5_A          110 VLVYCTAGISGGHINPAVTFGLFLARKVELLRALVYMIAQCLGAICGVGLVKAFMKGPYNQFGGGANSVALGYNKGTALG  189 (304)
T ss_dssp             HHHHHHTTTTCCCCSHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHTTTTCCCCCTTCCHHHHHH
T ss_pred             eeeeEeeccCCCccCcHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhccCcccccCCCccHHHHHH
Confidence            34456788999999999999999999999999999999999999999999999999877666555555667789999999


Q ss_pred             HHHHHHHHHHHHHHHhccCCCCCCCCCCCCchhHHHHHHHHHHHHHhhCCCCCCCcchhhHHHHHHhcCCCCCCcceehh
Q 028174           98 AEIIGTFVLVYTVFSATDPKRSARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARSFGAAVIYNNDKAWDDHWIFW  177 (212)
Q Consensus        98 ~E~~~T~ilv~~v~~~~~~~~~~~~~~~~~~~~~~ig~~v~~~~~~~~~~sG~~lNPA~~lg~~l~~~~~~~~~~~~vy~  177 (212)
                      .|+++||+|+++++...|+++...+.+.+.+.|+.+|+++.+..++.++.||+.+||||||||+++..+...|+++|+||
T Consensus       190 ~E~i~TfiLv~~Il~~~d~~~~~~~~~~~~lapl~IGl~V~~~~l~~g~~TG~amNPAR~~GPal~~~~~~~w~~~Wvyw  269 (304)
T 3cn5_A          190 AEIIGTFVLVYTVFSATDPKRSARDSHVPILAPLPIGFAVFMVHLATIPITGTGINPARSFGAAVIFNSNKVWDDQWIFW  269 (304)
T ss_dssp             HHHHHHHHHHHHHHHTEEEEEESTTSCCEEECHHHHHHHHHHHHHHHHHHHSCCCCHHHHHHHHHHHCCHHHHHHTTHHH
T ss_pred             HHHHHHHHHHHHHhheecCccCCCCcccccchHHHHHHHHHHHHHhccCCCccccChHHHHHHHHHHccCCCcCceEEEe
Confidence            99999999999999888765543221123478999999999999999999999999999999999854445799999999


Q ss_pred             hhhHHHHHHHHHHHHHHcchhhhhhcCCCCCCCCC
Q 028174          178 VGPFVGALAAAAYHQYILRAAAIKALGSFRSNPSN  212 (212)
Q Consensus       178 v~p~lGaila~ll~~~l~~~~~~~~~~~~~~~~~~  212 (212)
                      ++|++|+++|+++|++++.+++.+...++|..+.|
T Consensus       270 vgPiiGa~laa~~y~~l~~~~~~~~~~~~~~~~~~  304 (304)
T 3cn5_A          270 VGPFIGAAVAAAYHQYVLRAAAIKALGEFRSNPTN  304 (304)
T ss_dssp             HHHHHHHHHHHHHHHTTSCCCC-------------
T ss_pred             ehHHHHHHHHHHHHHHHhCCCCCCcccccccCCCC
Confidence            99999999999999999988766665566665554
>3gd8_A Aquaporin-4; proton exclusion, structural genomics protein structure initiative, center for structures of MEMB proteins, CSMP, glycoprotein; HET: BOG; 1.80A {Homo sapiens} Back     alignment and structure
>3iyz_A Aquaporin-4; water transport, water channel, two-dimensional C membrane protein, baculovirus expression system, glycoprote membrane; 10.00A {Rattus norvegicus} Back     alignment and structure
>2f2b_A Aquaporin AQPM; protein, integral membrane protein, channel, structural GENO PSI-2, protein structure initiative; 1.68A {Methanothermobacter marburgensis str} PDB: 2evu_A 3ne2_A* Back     alignment and structure
>2zz9_A Aquaporin-4; water transport, water channel, two-dimensional crystal, electron diffraction, electron microscopy, membrane protein; HET: PEE; 2.80A {Rattus norvegicus} PDB: 2d57_A Back     alignment and structure
>3d9s_A Aquaporin-5, AQP-5; aquaglyceroporin, membrane protein, water transport, X-RAY diffraction, lipid, phosphatidylserine, PSF, NPA, AR/R, water channel; HET: PS6; 2.00A {Homo sapiens} Back     alignment and structure
>2w2e_A AQY1, aquaporin, aquaporin PIP2-7 7; yeast, gating, membrane protein; HET: BOG; 1.15A {Komagataella pastoris} PDB: 2w1p_A* Back     alignment and structure
>2o9g_A Aquaporin Z; integral membrane protein, structural genomics, P protein structure initiative, center for structures of MEMB proteins, CSMP; HET: BOG; 1.90A {Escherichia coli} PDB: 2o9f_A* 2o9d_A* 2o9e_A 1rc2_B* 2abm_A* 3nk5_A* 3nka_A* 3nkc_A* Back     alignment and structure
>2b6o_A Aquaporin-0, lens fiber major intrinsic protein; aquaporin-0 junctions, AQP0, lens MIP, lipid-protein interac membrane, lipid bilayer; HET: MC3; 1.90A {Ovis aries} SCOP: f.19.1.1 PDB: 1ymg_A* 2b6p_A 2c32_A 1sor_A 3m9i_A* Back     alignment and structure
>1j4n_A Aquaporin 1; membrane protein, channel protein, transmembrane helices; HET: BNG; 2.20A {Bos taurus} SCOP: f.19.1.1 PDB: 1h6i_A 1fqy_A 1ih5_A Back     alignment and structure
>1ldf_A Glycerol uptake facilitator protein; glycerol-conducting membrane channel protein, transport PROT; HET: BOG; 2.10A {Escherichia coli} SCOP: f.19.1.1 PDB: 1fx8_A* 1lda_A* 1ldi_A* Back     alignment and structure
>3c02_A Aquaglyceroporin; membrane protein, glycerol, water, transport, structural GEN PSI-2, protein structure initiative; HET: BOG; 2.05A {Plasmodium falciparum} Back     alignment and structure
>3llq_A Aquaporin Z 2; aquaporin tetramer, membrane protein, water channel, structu genomics, PSI-2, protein structure initiative; 2.01A {Agrobacterium tumefaciens str} Back     alignment and structure
>2b6o_A Aquaporin-0, lens fiber major intrinsic protein; aquaporin-0 junctions, AQP0, lens MIP, lipid-protein interac membrane, lipid bilayer; HET: MC3; 1.90A {Ovis aries} SCOP: f.19.1.1 PDB: 1ymg_A* 2b6p_A 2c32_A 1sor_A 3m9i_A* Back     alignment and structure
>3gd8_A Aquaporin-4; proton exclusion, structural genomics protein structure initiative, center for structures of MEMB proteins, CSMP, glycoprotein; HET: BOG; 1.80A {Homo sapiens} Back     alignment and structure
>3d9s_A Aquaporin-5, AQP-5; aquaglyceroporin, membrane protein, water transport, X-RAY diffraction, lipid, phosphatidylserine, PSF, NPA, AR/R, water channel; HET: PS6; 2.00A {Homo sapiens} Back     alignment and structure
>2zz9_A Aquaporin-4; water transport, water channel, two-dimensional crystal, electron diffraction, electron microscopy, membrane protein; HET: PEE; 2.80A {Rattus norvegicus} PDB: 2d57_A Back     alignment and structure
>3llq_A Aquaporin Z 2; aquaporin tetramer, membrane protein, water channel, structu genomics, PSI-2, protein structure initiative; 2.01A {Agrobacterium tumefaciens str} Back     alignment and structure
>3c02_A Aquaglyceroporin; membrane protein, glycerol, water, transport, structural GEN PSI-2, protein structure initiative; HET: BOG; 2.05A {Plasmodium falciparum} Back     alignment and structure
>1j4n_A Aquaporin 1; membrane protein, channel protein, transmembrane helices; HET: BNG; 2.20A {Bos taurus} SCOP: f.19.1.1 PDB: 1h6i_A 1fqy_A 1ih5_A Back     alignment and structure
>2f2b_A Aquaporin AQPM; protein, integral membrane protein, channel, structural GENO PSI-2, protein structure initiative; 1.68A {Methanothermobacter marburgensis str} PDB: 2evu_A 3ne2_A* Back     alignment and structure
>1ldf_A Glycerol uptake facilitator protein; glycerol-conducting membrane channel protein, transport PROT; HET: BOG; 2.10A {Escherichia coli} SCOP: f.19.1.1 PDB: 1fx8_A* 1lda_A* 1ldi_A* Back     alignment and structure
>2o9g_A Aquaporin Z; integral membrane protein, structural genomics, P protein structure initiative, center for structures of MEMB proteins, CSMP; HET: BOG; 1.90A {Escherichia coli} PDB: 2o9f_A* 2o9d_A* 2o9e_A 1rc2_B* 2abm_A* 3nk5_A* 3nka_A* 3nkc_A* Back     alignment and structure
>3iyz_A Aquaporin-4; water transport, water channel, two-dimensional C membrane protein, baculovirus expression system, glycoprote membrane; 10.00A {Rattus norvegicus} Back     alignment and structure
>3cn5_A Aquaporin; membrane protein, transmembrane, transport, transport protein; 2.05A {Spinacia oleracea} PDB: 3cn6_A 3cll_A 1z98_A 2b5f_A Back     alignment and structure
>2w2e_A AQY1, aquaporin, aquaporin PIP2-7 7; yeast, gating, membrane protein; HET: BOG; 1.15A {Komagataella pastoris} PDB: 2w1p_A* Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 212
d1j4na_249 f.19.1.1 (A:) Aquaporin-1 {Cow (Bos taurus) [TaxId 7e-33
d1j4na_ 249 f.19.1.1 (A:) Aquaporin-1 {Cow (Bos taurus) [TaxId 1e-04
d1ymga1234 f.19.1.1 (A:6-239) Aquaporin-0 {Cow (Bos taurus) [ 4e-30
d1ymga1 234 f.19.1.1 (A:6-239) Aquaporin-0 {Cow (Bos taurus) [ 2e-04
d1fx8a_254 f.19.1.1 (A:) Glycerol uptake facilitator protein 2e-26
d1rc2a_231 f.19.1.1 (A:) Aquaporin Z {Escherichia coli [TaxId 5e-26
d1rc2a_ 231 f.19.1.1 (A:) Aquaporin Z {Escherichia coli [TaxId 0.002
>d1j4na_ f.19.1.1 (A:) Aquaporin-1 {Cow (Bos taurus) [TaxId: 9913]} Length = 249 Back     information, alignment and structure

class: Membrane and cell surface proteins and peptides
fold: Aquaporin-like
superfamily: Aquaporin-like
family: Aquaporin-like
domain: Aquaporin-1
species: Cow (Bos taurus) [TaxId: 9913]

 Score =  116 bits (292), Expect = 7e-33
 Identities = 78/174 (44%), Positives = 106/174 (60%), Gaps = 8/174 (4%)

Query: 22  CVIFVVGGHINPAVTFGLFLARKVSLIRAVAYMVAQCLGAICGVGLVKAFMKHEYNSLGG 81
            V  + G H+NPAVT GL L+ ++S++RA+ Y++AQC+GAI    ++        ++   
Sbjct: 68  SVGHISGAHLNPAVTLGLLLSCQISVLRAIMYIIAQCVGAIVATAILSGITSSLPDN-SL 126

Query: 82  GANTVASGYNKGSALGAEIIGTFVLVYTVFSATDPKRSARDSHVPVLAPLPIGFAVFMVH 141
           G N +A G N G  LG EIIGT  LV  V + TD +R      +    PL IGF+V + H
Sbjct: 127 GLNALAPGVNSGQGLGIEIIGTLQLVLCVLATTDRRRRD----LGGSGPLAIGFSVALGH 182

Query: 142 LATIPITGTGINPARSFGAAVIYNNDKAWDDHWIFWVGPFVGALAAAAYHQYIL 195
           L  I  TG GINPARSFG++VI +N   + DHWIFWVGPF+GA  A   + +IL
Sbjct: 183 LLAIDYTGCGINPARSFGSSVITHN---FQDHWIFWVGPFIGAALAVLIYDFIL 233
>d1j4na_ f.19.1.1 (A:) Aquaporin-1 {Cow (Bos taurus) [TaxId: 9913]} Length = 249 Back     information, alignment and structure
>d1ymga1 f.19.1.1 (A:6-239) Aquaporin-0 {Cow (Bos taurus) [TaxId: 9913]} Length = 234 Back     information, alignment and structure
>d1ymga1 f.19.1.1 (A:6-239) Aquaporin-0 {Cow (Bos taurus) [TaxId: 9913]} Length = 234 Back     information, alignment and structure
>d1fx8a_ f.19.1.1 (A:) Glycerol uptake facilitator protein GlpF {Escherichia coli [TaxId: 562]} Length = 254 Back     information, alignment and structure
>d1rc2a_ f.19.1.1 (A:) Aquaporin Z {Escherichia coli [TaxId: 562]} Length = 231 Back     information, alignment and structure
>d1rc2a_ f.19.1.1 (A:) Aquaporin Z {Escherichia coli [TaxId: 562]} Length = 231 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query212
d1fx8a_254 Glycerol uptake facilitator protein GlpF {Escheric 100.0
d1ymga1234 Aquaporin-0 {Cow (Bos taurus) [TaxId: 9913]} 100.0
d1j4na_249 Aquaporin-1 {Cow (Bos taurus) [TaxId: 9913]} 100.0
d1rc2a_231 Aquaporin Z {Escherichia coli [TaxId: 562]} 100.0
d1ymga1 234 Aquaporin-0 {Cow (Bos taurus) [TaxId: 9913]} 99.71
d1fx8a_ 254 Glycerol uptake facilitator protein GlpF {Escheric 99.63
d1j4na_ 249 Aquaporin-1 {Cow (Bos taurus) [TaxId: 9913]} 99.62
d1rc2a_ 231 Aquaporin Z {Escherichia coli [TaxId: 562]} 99.6
>d1fx8a_ f.19.1.1 (A:) Glycerol uptake facilitator protein GlpF {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
class: Membrane and cell surface proteins and peptides
fold: Aquaporin-like
superfamily: Aquaporin-like
family: Aquaporin-like
domain: Glycerol uptake facilitator protein GlpF
species: Escherichia coli [TaxId: 562]

Probab=100.00  E-value=9e-43  Score=290.22  Aligned_cols=179  Identities=26%  Similarity=0.365  Sum_probs=155.0

Q ss_pred             HHHHhhcccccccccchHHHHHHHHhcCCchhHHHHHHHHHhHHHHHHHHHHHHHhhhhhhhcC----------------
Q 028174           17 DLVTGCVIFVVGGHINPAVTFGLFLARKVSLIRAVAYMVAQCLGAICGVGLVKAFMKHEYNSLG----------------   80 (212)
Q Consensus        17 ~~~~~~~~~iSGaH~NPaVTla~~~~g~~~~~~~~~yi~aQ~~Ga~~g~~~~~~~~~~~~~~~~----------------   80 (212)
                      ......++++||||+|||||+++++.|+++|.+.+.|+++|++|+++|+++++.++++.+....                
T Consensus        48 ~~~i~~~g~vSGaH~NPAVTla~~i~g~~~~~~~~~Yi~aQ~lGa~~ga~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  127 (254)
T d1fx8a_          48 AMAIYLTAGVSGAHLNPAVTIALWLFACFDKRKVIPFIVSQVAGAFCAAALVYGLYYNLFFDFEQTHHIVRGSVESVDLA  127 (254)
T ss_dssp             HHHHHHHHHHHCCCCSHHHHHHHHHHSCCCGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCTTSGGGHHHH
T ss_pred             HHHHHHHhccccceEChhhHHHHHHcCCCcHHHhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhccccccccCCccchhhc
Confidence            3445677889999999999999999999999999999999999999999999999887543221                


Q ss_pred             -CCccccCCCCchhhHHHHHHHHHHHHHHHHHHhccCCCCCCCCCCCCchhHHHHHHHHHHHHHhhCCCCCCCcchhhHH
Q 028174           81 -GGANTVASGYNKGSALGAEIIGTFVLVYTVFSATDPKRSARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARSFG  159 (212)
Q Consensus        81 -~~~~~~~~~~~~~~~~~~E~~~T~ilv~~v~~~~~~~~~~~~~~~~~~~~~~ig~~v~~~~~~~~~~sG~~lNPA~~lg  159 (212)
                       ...+.+.++.+.+++++.|+++|++|+++++...+++++...   ....|+.+|+.+...+++.+++||+++|||||||
T Consensus       128 ~~~~t~p~~~~s~~~~~~~E~v~Tf~lv~~il~~~~~~~~~~~---~~~~~l~iG~~v~~~~~~~g~~TG~s~NPAR~lg  204 (254)
T d1fx8a_         128 GTFSTYPNPHINFVQAFAVEMVITAILMGLILALTDDGNGVPR---GPLAPLLIGLLIAVIGASMGPLTGFAMNPARDFG  204 (254)
T ss_dssp             TTTSCCCCTTCCHHHHHHHHHHHHHHHHHHHHHHHCTTSSSCC---GGGHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHH
T ss_pred             ceeecCCCccccHHHHHHHHHHHHHHHHHHHHHHhcCccCCCc---ccccchHHHHHHHHHHhhcccccccccChHHHHH
Confidence             112345667889999999999999999999999988765433   4578999999999999999999999999999999


Q ss_pred             HHHHh----------cCCCCCCcceehhhhhHHHHHHHHHHHHHHcchh
Q 028174          160 AAVIY----------NNDKAWDDHWIFWVGPFVGALAAAAYHQYILRAA  198 (212)
Q Consensus       160 ~~l~~----------~~~~~~~~~~vy~v~p~lGaila~ll~~~l~~~~  198 (212)
                      |+++.          .++.+|+++|+||++|++|+++++++||+++..+
T Consensus       205 pai~~~~~~~~~~~~~~~~~~~~~wvy~vgP~~Ga~ia~~~y~~l~~~~  253 (254)
T d1fx8a_         205 PKVFAWLAGWGNVAFTGGRDIPYFLVPLFGPIVGAIVGAFAYRKLIGRH  253 (254)
T ss_dssp             HHHHHHHTTTTTHHHHTTCSSCTTHHHHHTTHHHHHHHHHHHHHHTGGG
T ss_pred             HHHHHhhcccccccccCCCCCCeeehHhHHHHHHHHHHHHHHHHHHhhh
Confidence            99984          1246899999999999999999999999998754
>d1ymga1 f.19.1.1 (A:6-239) Aquaporin-0 {Cow (Bos taurus) [TaxId: 9913]} Back     information, alignment and structure
>d1j4na_ f.19.1.1 (A:) Aquaporin-1 {Cow (Bos taurus) [TaxId: 9913]} Back     information, alignment and structure
>d1rc2a_ f.19.1.1 (A:) Aquaporin Z {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1ymga1 f.19.1.1 (A:6-239) Aquaporin-0 {Cow (Bos taurus) [TaxId: 9913]} Back     information, alignment and structure
>d1fx8a_ f.19.1.1 (A:) Glycerol uptake facilitator protein GlpF {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1j4na_ f.19.1.1 (A:) Aquaporin-1 {Cow (Bos taurus) [TaxId: 9913]} Back     information, alignment and structure
>d1rc2a_ f.19.1.1 (A:) Aquaporin Z {Escherichia coli [TaxId: 562]} Back     information, alignment and structure