Citrus Sinensis ID: 028177

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210--
MAAIEWSWSRLMEFMIQSAHQLEVSPIVKYSALSLFADRFFPSLTRYTVGSNGKGNWLLQPIRESNLQLFALIALWISSKIHDSRPVSVKSFKSLGDKIIKDEHFTTRDFLEAEIVFMQVLDFEIGTSNIAFLLLEELLLQFKGVAKVGELLRFEACMDIMDLLYEKEETSTLYRSPRSLAASTLIASYLITVPKQRWEFPILPWGKYFFPL
cccHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHcccccHHHccccccccccccccccccHHHHHHHHHHHHHHcccccccHHHHHHHHcccccccccccHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHccccEEEEccccHHHHHHHHHHHHHccccccccccccccccccccc
ccEEcHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHccccHHHEEccccccccccccccHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHcccccEEEccccHHHHHHHHHHHHHHccccccccccccHHHHHcccc
MAAIEWSWSRLMEFMIQSahqlevspiVKYSALSlfadrffpsltrytvgsngkgnwllqpirESNLQLFALIALWISskihdsrpvsvkSFKSLGDkiikdehfttrDFLEAEIVFMQVLDFEIGTSNIAFLLLEELLLQFKGVAKVGELLRFEACMDIMDLLYEkeetstlyrsprslAASTLIASYLITvpkqrwefpilpwgkyffpl
MAAIEWSWSRLMEFMIQSAHQLEVSPIVKYSALSLFADRFFPSLTRYTVGSNGKGNWLLQPIRESNLQLFALIALWIsskihdsrpvSVKSFKSLGDKIIKDEHFTTRDFLEAEIVFMQVLDFEIGTSNIAFLLLEELLLQFKGVAKVGELLRFEACMDIMDLLYEKEETSTLYRSPRSLAASTLIASYLITvpkqrwefpilpwgkyffpl
MAAIEWSWSRLMEFMIQSAHQLEVSPIVKYSALSLFADRFFPSLTRYTVGSNGKGNWLLQPIRESNLQLFALIALWISSKIHDSRPVSVKSFKSLGDKIIKDEHFTTRDFLEAEIVFMQVLDFEIGTSNIAFllleelllQFKGVAKVGELLRFEACMDIMDLLYEKEETSTLYRSPRSLAASTLIASYLITVPKQRWEFPILPWGKYFFPL
***IEWSWSRLMEFMIQSAHQLEVSPIVKYSALSLFADRFFPSLTRYTVGSNGKGNWLLQPIRESNLQLFALIALWISSKIHDSRPVSVKSFKSLGDKIIKDEHFTTRDFLEAEIVFMQVLDFEIGTSNIAFLLLEELLLQFKGVAKVGELLRFEACMDIMDLLYEKEETSTLYRSPRSLAASTLIASYLITVPKQRWEFPILPWGKYFF**
********SRLMEFMIQSAHQLEVSPIVKYSALSLFADRFFPSLTRYTVGSNGKGNWLLQPIRESNLQLFALIALWISSKIHDSRPVSVKSFKSLGDKIIKDEHFTTRDFLEAEIVFMQVLDFEIGTSNIAFLLLEELLLQFKGVAKVGELLRFEACMDIMDLLYEKEETSTLYRSPRSLAASTLIASYLITVPKQRWEFPILPWGKYFFPL
MAAIEWSWSRLMEFMIQSAHQLEVSPIVKYSALSLFADRFFPSLTRYTVGSNGKGNWLLQPIRESNLQLFALIALWISSKIHDSRPVSVKSFKSLGDKIIKDEHFTTRDFLEAEIVFMQVLDFEIGTSNIAFLLLEELLLQFKGVAKVGELLRFEACMDIMDLLYEKEETSTLYRSPRSLAASTLIASYLITVPKQRWEFPILPWGKYFFPL
*AAIEWSWSRLMEFMIQSAHQLEVSPIVKYSALSLFADRFFPSLTRYTVGSNGKGNWLLQPIRESNLQLFALIALWISSKIHDSRPVSVKSFKSLGDKIIKDEHFTTRDFLEAEIVFMQVLDFEIGTSNIAFLLLEELLLQFKGVAKVGELLRFEACMDIMDLLYEKEETSTLYRSPRSLAASTLIASYLITVPKQRWEFPILPWGKYFFPL
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooo
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MAAIEWSWSRLMEFMIQSAHQLEVSPIVKYSALSLFADRFFPSLTRYTVGSNGKGNWLLQPIRESNLQLFALIALWISSKIHDSRPVSVKSFKSLGDKIIKDEHFTTRDFLEAEIVFMQVLDFEIGTSNIAFLLLEELLLQFKGVAKVGELLRFEACMDIMDLLYEKEETSTLYRSPRSLAASTLIASYLITVPKQRWEFPILPWGKYFFPL
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query212 2.2.26 [Sep-21-2011]
Q9C5X2234 Cyclin-J18 OS=Arabidopsis yes no 0.929 0.841 0.651 1e-69
Q0DTM7261 Cyclin-J18-like OS=Oryza yes no 0.924 0.750 0.562 6e-66
>sp|Q9C5X2|CCJ18_ARATH Cyclin-J18 OS=Arabidopsis thaliana GN=CYCJ18 PE=2 SV=2 Back     alignment and function desciption
 Score =  262 bits (670), Expect = 1e-69,   Method: Compositional matrix adjust.
 Identities = 129/198 (65%), Positives = 161/198 (81%), Gaps = 1/198 (0%)

Query: 10  RLMEFMIQSAHQLEVSPIVKYSALSLFADRFFPSLTRYTVGSNGKGNWLLQPIRESNLQL 69
           RL+EF+IQS   LE+ PIVKYSALSLF DRF P+L R+      + +WLLQP+ ESNLQL
Sbjct: 11  RLVEFLIQSTTLLELPPIVKYSALSLFFDRFRPNLVRFLQKKKAE-HWLLQPLNESNLQL 69

Query: 70  FALIALWISSKIHDSRPVSVKSFKSLGDKIIKDEHFTTRDFLEAEIVFMQVLDFEIGTSN 129
           F LI++WIS K+H +R +SV S KS GDK+I ++ F  RDFL+AE+VF++VL FEIGT N
Sbjct: 70  FVLISIWISCKMHCTRGLSVHSLKSFGDKVITEQLFMVRDFLDAELVFLKVLKFEIGTLN 129

Query: 130 IAFLLLEELLLQFKGVAKVGELLRFEACMDIMDLLYEKEETSTLYRSPRSLAASTLIASY 189
           IA+  LE+LL+QFK VAKVGE L FEACMD+MDLLYEKE+TS LY+S +SLAAS L++SY
Sbjct: 130 IAYTRLEDLLIQFKEVAKVGEQLNFEACMDMMDLLYEKEDTSLLYQSSKSLAASILVSSY 189

Query: 190 LITVPKQRWEFPILPWGK 207
           +ITVPKQ++EFPILPW K
Sbjct: 190 IITVPKQQYEFPILPWVK 207

Arabidopsis thaliana (taxid: 3702)
>sp|Q0DTM7|CCJ18_ORYSJ Cyclin-J18-like OS=Oryza sativa subsp. japonica GN=Os03g0237900 PE=3 SV=2 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query212
255561809241 conserved hypothetical protein [Ricinus 0.948 0.834 0.709 3e-78
225424472265 PREDICTED: cyclin-J18-like [Vitis vinife 0.882 0.705 0.734 7e-77
449445391235 PREDICTED: cyclin-J18-like [Cucumis sati 0.924 0.834 0.690 8e-75
357438949231 Cyclin-J18-like protein [Medicago trunca 0.971 0.891 0.655 2e-74
229914860234 cyclin-like protein [Eutrema halophilum] 0.929 0.841 0.691 2e-72
449518429 424 PREDICTED: cyclin-J18-like [Cucumis sati 0.863 0.431 0.701 4e-70
12658427234 cyclin J18 [Arabidopsis thaliana] 0.929 0.841 0.656 2e-68
356552029234 PREDICTED: cyclin-J18-like [Glycine max] 0.933 0.846 0.626 3e-68
79316384234 cyclin J18 [Arabidopsis thaliana] gi|147 0.929 0.841 0.651 5e-68
297814430234 cyclin J18 [Arabidopsis lyrata subsp. ly 0.929 0.841 0.641 2e-67
>gi|255561809|ref|XP_002521914.1| conserved hypothetical protein [Ricinus communis] gi|223538952|gb|EEF40550.1| conserved hypothetical protein [Ricinus communis] Back     alignment and taxonomy information
 Score =  296 bits (759), Expect = 3e-78,   Method: Compositional matrix adjust.
 Identities = 144/203 (70%), Positives = 172/203 (84%), Gaps = 2/203 (0%)

Query: 10  RLMEFMIQSAHQLE-VSPIVKYSALSLFADRFFPSLTRYTVGSNGKGNWLLQPIRESNLQ 68
           R +EF+I+SAH+LE VSPIVKY+ALSLFADRF+PSL+R+ VG   KG+WLLQ + ESNLQ
Sbjct: 14  RAVEFLIESAHELEEVSPIVKYTALSLFADRFYPSLSRF-VGQQNKGSWLLQSMTESNLQ 72

Query: 69  LFALIALWISSKIHDSRPVSVKSFKSLGDKIIKDEHFTTRDFLEAEIVFMQVLDFEIGTS 128
           LFALI+LW+SSKIHDSRP+SVKS K   DK IK++HFT RDFLEA ++F +VL++EIG  
Sbjct: 73  LFALISLWVSSKIHDSRPLSVKSLKIFSDKTIKEQHFTARDFLEAILIFFKVLNYEIGAG 132

Query: 129 NIAFLLLEELLLQFKGVAKVGELLRFEACMDIMDLLYEKEETSTLYRSPRSLAASTLIAS 188
           NIAF+ LEELL QF+ VAKVG+ L  EACMDIMDLLYEKEETS LY SPRSLAASTL+AS
Sbjct: 133 NIAFIFLEELLSQFREVAKVGDFLNSEACMDIMDLLYEKEETSVLYSSPRSLAASTLVAS 192

Query: 189 YLITVPKQRWEFPILPWGKYFFP 211
           Y+ITVP+QRW+FP+L W    FP
Sbjct: 193 YVITVPEQRWKFPVLSWVLKLFP 215

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|225424472|ref|XP_002281669.1| PREDICTED: cyclin-J18-like [Vitis vinifera] Back     alignment and taxonomy information
>gi|449445391|ref|XP_004140456.1| PREDICTED: cyclin-J18-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|357438949|ref|XP_003589751.1| Cyclin-J18-like protein [Medicago truncatula] gi|355478799|gb|AES60002.1| Cyclin-J18-like protein [Medicago truncatula] Back     alignment and taxonomy information
>gi|229914860|gb|ACQ90585.1| cyclin-like protein [Eutrema halophilum] Back     alignment and taxonomy information
>gi|449518429|ref|XP_004166244.1| PREDICTED: cyclin-J18-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|12658427|gb|AAK01135.1|AF331758_1 cyclin J18 [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|356552029|ref|XP_003544374.1| PREDICTED: cyclin-J18-like [Glycine max] Back     alignment and taxonomy information
>gi|79316384|ref|NP_001030944.1| cyclin J18 [Arabidopsis thaliana] gi|147637341|sp|Q9C5X2.2|CCJ18_ARATH RecName: Full=Cyclin-J18 gi|330250421|gb|AEC05515.1| cyclin J18 [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|297814430|ref|XP_002875098.1| cyclin J18 [Arabidopsis lyrata subsp. lyrata] gi|297320936|gb|EFH51357.1| cyclin J18 [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query212
TAIR|locus:1009023203234 CYCJ18 "cyclin J18" [Arabidops 0.929 0.841 0.631 1.3e-61
TAIR|locus:1009023203 CYCJ18 "cyclin J18" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 630 (226.8 bits), Expect = 1.3e-61, P = 1.3e-61
 Identities = 125/198 (63%), Positives = 155/198 (78%)

Query:    10 RLMEFMIQSAHQLEVSPIVKYSALSLFADRFFPSLTRYTVGSNGKGNWLLQPIRESNLQL 69
             RL+EF+IQS   LE+ PIVKYSALSLF DRF P+L R+      + +WLLQP+ ESNLQL
Sbjct:    11 RLVEFLIQSTTLLELPPIVKYSALSLFFDRFRPNLVRFLQKKKAE-HWLLQPLNESNLQL 69

Query:    70 FALIALWISSKIHDSRPVSVKSFKSLGDKIIKDEHFTTRDFLEAEIVFMQVLDFEIGTSN 129
             F LI++WIS K+H +R +SV S KS GDK+I ++ F  RDFL+AE+VF++VL FEIGT N
Sbjct:    70 FVLISIWISCKMHCTRGLSVHSLKSFGDKVITEQLFMVRDFLDAELVFLKVLKFEIGTLN 129

Query:   130 IAFXXXXXXXXQFKGVAKVGELLRFEACMDIMDLLYEKEETSTLYRSPRSLAASTLIASY 189
             IA+        QFK VAKVGE L FEACMD+MDLLYEKE+TS LY+S +SLAAS L++SY
Sbjct:   130 IAYTRLEDLLIQFKEVAKVGEQLNFEACMDMMDLLYEKEDTSLLYQSSKSLAASILVSSY 189

Query:   190 LITVPKQRWEFPILPWGK 207
             +ITVPKQ++EFPILPW K
Sbjct:   190 IITVPKQQYEFPILPWVK 207


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.324   0.137   0.415    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      212       204   0.00094  111 3  11 22  0.42    32
                                                     31  0.46    35


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  1
  No. of states in DFA:  610 (65 KB)
  Total size of DFA:  178 KB (2102 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  15.69u 0.18s 15.87t   Elapsed:  00:00:00
  Total cpu time:  15.69u 0.18s 15.87t   Elapsed:  00:00:00
  Start:  Fri May 10 06:21:51 2013   End:  Fri May 10 06:21:51 2013
GO:0005739 "mitochondrion" evidence=ISM
GO:0051726 "regulation of cell cycle" evidence=TAS

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q0DTM7CCJ18_ORYSJNo assigned EC number0.56210.92450.7509yesno
Q9C5X2CCJ18_ARATHNo assigned EC number0.65150.92920.8418yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
AT2G01905.1-P
CYCJ18 (CYCLIN J18); cyclin J18 (cycJ18) (234 aa)
(Arabidopsis thaliana)
Predicted Functional Partners:
PER14
peroxidase, putative; peroxidase, putative; FUNCTIONS IN- electron carrier activity, peroxidase [...] (337 aa)
      • 0.534

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query212
pfam00134127 pfam00134, Cyclin_N, Cyclin, N-terminal domain 6e-10
>gnl|CDD|215740 pfam00134, Cyclin_N, Cyclin, N-terminal domain Back     alignment and domain information 
 Score = 54.9 bits (133), Expect = 6e-10
 Identities = 25/116 (21%), Positives = 52/116 (44%), Gaps = 22/116 (18%)

Query: 11  LMEFMIQSAHQLEVSPIVKYSALSLFADRFFPSLTRYTVGSNGKGNWLLQPIRESNLQLF 70
           L++++++   + ++ P   Y A++   DRF                   QP+  + LQL 
Sbjct: 34  LIDWLVEVHEEFKLLPETLYLAVNYL-DRFL----------------SKQPVPRTKLQLV 76

Query: 71  ALIALWISSKIHDSRPVSVKSFKSLGDKIIKDEHFTTRDFLEAEIVFMQVLDFEIG 126
            +  L I++K  +  P SV+ F       I D  +T  + L  E++ +  L++++ 
Sbjct: 77  GVTCLLIAAKYEEIYPPSVEDF-----VYITDNAYTKEEILRMELLILSTLNWDLS 127

Cyclins regulate cyclin dependent kinases (CDKs). Human cyclin-O is a Uracil-DNA glycosylase that is related to other cyclins. Cyclins contain two domains of similar all-alpha fold, of which this family corresponds with the N-terminal domain. Length = 127

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 212
KOG0653391 consensus Cyclin B and related kinase-activating p 99.92
COG5024440 Cyclin [Cell division and chromosome partitioning] 99.83
KOG0655408 consensus G1/S-specific cyclin E [Cell cycle contr 99.83
PF00134127 Cyclin_N: Cyclin, N-terminal domain; InterPro: IPR 99.82
KOG0654359 consensus G2/Mitotic-specific cyclin A [Cell cycle 99.79
KOG0656335 consensus G1/S-specific cyclin D [Cell cycle contr 99.76
TIGR00569305 ccl1 cyclin ccl1. University). 99.46
cd0004388 CYCLIN Cyclin box fold. Protein binding domain fun 99.32
smart0038583 CYCLIN domain present in cyclins, TFIIB and Retino 99.12
KOG0834323 consensus CDK9 kinase-activating protein cyclin T 98.56
PF08613149 Cyclin: Cyclin; InterPro: IPR013922 Cyclins are eu 98.22
COG5333297 CCL1 Cdk activating kinase (CAK)/RNA polymerase II 98.02
PRK00423310 tfb transcription initiation factor IIB; Reviewed 97.44
KOG0794264 consensus CDK8 kinase-activating protein cyclin C 96.8
KOG2496325 consensus Cdk activating kinase (CAK)/RNA polymera 94.75
KOG0835 367 consensus Cyclin L [General function prediction on 88.39
KOG1674218 consensus Cyclin [General function prediction only 81.95
KOG1675343 consensus Predicted cyclin [General function predi 81.19
>KOG0653 consensus Cyclin B and related kinase-activating proteins [Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information 
Probab=99.92  E-value=8.6e-26  Score=203.26  Aligned_cols=162  Identities=22%  Similarity=0.363  Sum_probs=135.8

Q ss_pred             hHHHHHHHHHHhhhcceeccceeeehhhhhhhhhcCCcccccccCCCCCccccccccccchhHHHHHHHH-HHhhhccCC
Q 028177            7 SWSRLMEFMIQSAHQLEVSPIVKYSALSLFADRFFPSLTRYTVGSNGKGNWLLQPIRESNLQLFALIALW-ISSKIHDSR   85 (212)
Q Consensus         7 ~r~~LVdfLve~a~~lel~p~tkYlAvS~f~DRFLpsl~r~~~~~~~~~~wll~pv~~snLQLf~lislw-IAsK~hE~~   85 (212)
                      .|++|+|||||+..++++.|+|+|+||++ +||||+..                ++....|||+|+.|++ |||||+|..
T Consensus       157 mR~iLvdwlvevh~~F~L~~ETL~LaVnl-iDRfL~~~----------------~v~~~~lqLvgvsalf~IA~K~EE~~  219 (391)
T KOG0653|consen  157 MRAILVDWLVEVHEKFGLSPETLYLAVNL-IDRFLSKV----------------KVPLKKLQLVGVSALLSIACKYEEIS  219 (391)
T ss_pred             HHHHHHHHHHHhhhhcCcCHHHHHHHHHH-HHHHHHHh----------------cccHHHhhHHhHHHHHHHHHhhhhcc
Confidence            79999999999999999999999999999 89999993                3889999999999966 999999999


Q ss_pred             CcchhhhhhcccccccCCccchHHHHHHHHHHHHHhhcccCCcchHHHHHHHHHHHccchhh-hhhhhhHHHHHHHHHhh
Q 028177           86 PVSVKSFKSLGDKIIKDEHFTTRDFLEAEIVFMQVLDFEIGTSNIAFLLLEELLLQFKGVAK-VGELLRFEACMDIMDLL  164 (212)
Q Consensus        86 PlsV~slk~~~d~~ItDq~yT~rdfleaE~~fLkVL~FeIgt~pia~tfLeel~~qf~~vak-vg~l~~~e~cm~imdll  164 (212)
                      +|++++|.     +|||..||.+|+++||..+|++|+|+++ .|+.+.||+++ .+....++ .=.+..+.+++-++|  
T Consensus       220 ~P~v~dlv-----~isd~~~s~~~il~mE~~il~~L~f~l~-~p~~~~FLrr~-~ka~~~d~~~~~~~k~~~El~l~d--  290 (391)
T KOG0653|consen  220 LPSVEDLV-----LITDGAYSREEILRMEKYILNVLEFDLS-VPTPLSFLRRF-LKAADYDIKTRTLVKYLLELSLCD--  290 (391)
T ss_pred             CCccceeE-----eeeCCccchHHHHHHHHHHHhccCeeec-CCchHHHHHHH-HHhhhcchhHHHHHHHHHHHHHhh--
Confidence            99999999     5999999999999999999999999999 59999999999 55444222 334455555555555  


Q ss_pred             hhcccceeeecCccchhhhhhhhhhheeccccccc
Q 028177          165 YEKEETSTLYRSPRSLAASTLIASYLITVPKQRWE  199 (212)
Q Consensus       165 ye~e~ts~l~~sp~slaas~lv~~y~~tvpkq~we  199 (212)
                          -..+-+.+|.+.||+...+..+-...+ .|.
T Consensus       291 ----~~~~~~~~s~~aaa~~~~~~~~~~~~~-~w~  320 (391)
T KOG0653|consen  291 ----YSMLSIPPSSSAAASFTLALRMLSKGD-VWS  320 (391)
T ss_pred             ----hHHhccCcHHHHHHHHHHHHHHhccCC-ccC
Confidence                233446677777888888887777666 454

>COG5024 Cyclin [Cell division and chromosome partitioning] Back     alignment and domain information
>KOG0655 consensus G1/S-specific cyclin E [Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information
>PF00134 Cyclin_N: Cyclin, N-terminal domain; InterPro: IPR006671 Cyclins are eukaryotic proteins that play an active role in controlling nuclear cell division cycles [], and regulate cyclin dependent kinases (CDKs) Back     alignment and domain information
>KOG0654 consensus G2/Mitotic-specific cyclin A [Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information
>KOG0656 consensus G1/S-specific cyclin D [Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information
>TIGR00569 ccl1 cyclin ccl1 Back     alignment and domain information
>cd00043 CYCLIN Cyclin box fold Back     alignment and domain information
>smart00385 CYCLIN domain present in cyclins, TFIIB and Retinoblastoma Back     alignment and domain information
>KOG0834 consensus CDK9 kinase-activating protein cyclin T [Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information
>PF08613 Cyclin: Cyclin; InterPro: IPR013922 Cyclins are eukaryotic proteins that play an active role in controlling nuclear cell division cycles [], and regulate cyclin dependent kinases (CDKs) Back     alignment and domain information
>COG5333 CCL1 Cdk activating kinase (CAK)/RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH/TFIIK, cyclin H subunit [Cell division and chromosome partitioning / Transcription / DNA replication, recombination, and repair] Back     alignment and domain information
>PRK00423 tfb transcription initiation factor IIB; Reviewed Back     alignment and domain information
>KOG0794 consensus CDK8 kinase-activating protein cyclin C [Transcription] Back     alignment and domain information
>KOG2496 consensus Cdk activating kinase (CAK)/RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH/TFIIK, cyclin H subunit [Cell cycle control, cell division, chromosome partitioning; Transcription; Replication, recombination and repair] Back     alignment and domain information
>KOG0835 consensus Cyclin L [General function prediction only] Back     alignment and domain information
>KOG1674 consensus Cyclin [General function prediction only] Back     alignment and domain information
>KOG1675 consensus Predicted cyclin [General function prediction only] Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query212
1g3n_C257 V-cyclin; cyclin-dependent kinase, INK4 inhibitor, 4e-08
1f5q_B252 Gamma herpesvirus cyclin; herpesviral cyclin, cycl 7e-07
2w96_A271 G1/S-specific cyclin-D1; serine/threonine-protein 3e-06
3g33_B306 CCND3 protein; Ser/Thr protein kinase, cell cycle, 7e-06
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 9e-06
1w98_B283 Cyclin E, G1/S-specific cyclin E1; cell cycle, tra 1e-05
2b9r_A269 Human cyclin B1; cell cycle; 2.90A {Homo sapiens} 1e-05
2f2c_A254 Cyclin homolog, V-cyclin; small molecule inhibitor 2e-05
2cch_B260 Cyclin A2, cyclin-A; complex(transferase/cell divi 3e-05
2i53_A258 Cyclin K; cell cycle, transcription, cyclin BOX, C 3e-05
1jkw_A323 Cyclin H; cell cycle, cell division, nuclear prote 3e-04
>1g3n_C V-cyclin; cyclin-dependent kinase, INK4 inhibitor, viral cyclin, cell cycle, signaling protein; 2.90A {Human herpesvirus 8} SCOP: a.74.1.1 a.74.1.1 Length = 257 Back     alignment and structure
 Score = 50.9 bits (122), Expect = 4e-08
 Identities = 30/187 (16%), Positives = 63/187 (33%), Gaps = 26/187 (13%)

Query: 11  LMEFMIQSAHQLEVSPIVKYSALSLFADRFFPSLTRYTVGSNGKGNWLLQPIRESNLQLF 70
           L  +M     +  + P V   AL+L  DR                  L++ + + + Q  
Sbjct: 54  LGTWMFSVCQEYNLEPNVVALALNLL-DRLL----------------LIKQVSKEHFQKT 96

Query: 71  ALIALWISSKIHDSRPVSVKSFKSLGDKIIKDEHFTTRDFLEAEIVFMQVLDFEIGTSNI 130
               L ++SK+    P+S  S           + F+ ++ ++ E   ++ L +       
Sbjct: 97  GSACLLVASKLRSLTPISTSSL-----CYAAADSFSRQELIDQEKELLEKLAWRTEAVL- 150

Query: 131 AFLLLEELLLQFKGVAKVGELLRFEACMDIMDLLYEKEETSTLYRSPRSLAASTLIASYL 190
           A  +   LLL+  G ++  +    E    ++       +  T       ++A+       
Sbjct: 151 ATDVTSFLLLKLVGGSQHLDFWHHEVNT-LITKAL--VDPLTGSLPASIISAAGCALLVP 207

Query: 191 ITVPKQR 197
             V  Q 
Sbjct: 208 ANVIPQD 214
>1f5q_B Gamma herpesvirus cyclin; herpesviral cyclin, cyclin dependent kinase. protein/protein complex, transferase; 2.50A {Murid herpesvirus 4} SCOP: a.74.1.1 a.74.1.1 Length = 252 Back     alignment and structure
>2w96_A G1/S-specific cyclin-D1; serine/threonine-protein kinase, chromosomal rearrangement, ATP-binding, transferase, polymorphism, cell division; 2.30A {Homo sapiens} PDB: 2w99_A 2w9f_A 2w9z_A Length = 271 Back     alignment and structure
>3g33_B CCND3 protein; Ser/Thr protein kinase, cell cycle, phosphorylation, ATP-BIN cell division, disease mutation, kinase; 3.00A {Homo sapiens} Length = 306 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1w98_B Cyclin E, G1/S-specific cyclin E1; cell cycle, transferase; HET: TPO; 2.15A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 Length = 283 Back     alignment and structure
>2b9r_A Human cyclin B1; cell cycle; 2.90A {Homo sapiens} PDB: 2jgz_B* Length = 269 Back     alignment and structure
>2f2c_A Cyclin homolog, V-cyclin; small molecule inhibitor bound between N-terminal and C-TERM domain of kinase, cell cycle-transferase complex; HET: AP9; 2.80A {Herpesvirus saimiri} SCOP: a.74.1.1 a.74.1.1 PDB: 1jow_A* 2euf_A* 1xo2_A* 1bu2_A Length = 254 Back     alignment and structure
>2cch_B Cyclin A2, cyclin-A; complex(transferase/cell division), ATP-binding, CDK2, cell cycle, cyclin, mitosis, nuclear protein; HET: TPO ATP; 1.7A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 PDB: 1fvv_B* 1jsu_B* 1okv_B 1okw_B* 1ol1_B* 1ol2_B* 1urc_B 1fin_B* 2c5p_B* 2c5o_B* 2i40_B* 2wev_B* 2wfy_B 2whb_B* 3eid_B* 3ej1_B* 3eoc_B* 2wha_B* 2x1n_B* 1vyw_B* ... Length = 260 Back     alignment and structure
>2i53_A Cyclin K; cell cycle, transcription, cyclin BOX, CDK9, positive transcription elongation factor, P-TEFB; 1.50A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 Length = 258 Back     alignment and structure
>1jkw_A Cyclin H; cell cycle, cell division, nuclear protein; 2.60A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 PDB: 1kxu_A Length = 323 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query212
1f5q_B252 Gamma herpesvirus cyclin; herpesviral cyclin, cycl 99.96
2f2c_A254 Cyclin homolog, V-cyclin; small molecule inhibitor 99.96
1g3n_C257 V-cyclin; cyclin-dependent kinase, INK4 inhibitor, 99.96
2w96_A271 G1/S-specific cyclin-D1; serine/threonine-protein 99.95
2b9r_A269 Human cyclin B1; cell cycle; 2.90A {Homo sapiens} 99.95
3g33_B306 CCND3 protein; Ser/Thr protein kinase, cell cycle, 99.94
2cch_B260 Cyclin A2, cyclin-A; complex(transferase/cell divi 99.94
1w98_B283 Cyclin E, G1/S-specific cyclin E1; cell cycle, tra 99.94
2i53_A258 Cyclin K; cell cycle, transcription, cyclin BOX, C 99.92
2ivx_A257 Cyclin-T2; transcription regulation, cell division 99.91
2pk2_A 358 Cyclin-T1, protein TAT; TAR, twinning, transcripti 99.88
1zp2_A235 RNA polymerase II holoenzyme cyclin-like subunit; 99.87
3rgf_B285 Cyclin-C; protein kinase complex, transferase,tran 99.86
1jkw_A323 Cyclin H; cell cycle, cell division, nuclear prote 99.82
1c9b_A207 General transcription factor IIB; protein-DNA comp 99.64
1ais_B200 TFB TFIIB, protein (transcription initiation facto 99.25
3k7a_M345 Transcription initiation factor IIB; RNA polymeras 98.57
2pmi_B293 PHO85 cyclin PHO80, aminoglycoside anti; cyclin-de 97.58
4bbr_M345 Transcription initiation factor IIB; RNA polymeras 97.0
>1f5q_B Gamma herpesvirus cyclin; herpesviral cyclin, cyclin dependent kinase. protein/protein complex, transferase; 2.50A {Murid herpesvirus 4} SCOP: a.74.1.1 a.74.1.1 Back     alignment and structure
Probab=99.96  E-value=1.9e-29  Score=213.06  Aligned_cols=154  Identities=17%  Similarity=0.169  Sum_probs=122.5

Q ss_pred             hhHHHHHHHHHHhhhcceeccceeeehhhhhhhhhcCCcccccccCCCCCccccccccccchhHHHHHHHHHHhhhccCC
Q 028177            6 WSWSRLMEFMIQSAHQLEVSPIVKYSALSLFADRFFPSLTRYTVGSNGKGNWLLQPIRESNLQLFALIALWISSKIHDSR   85 (212)
Q Consensus         6 ~~r~~LVdfLve~a~~lel~p~tkYlAvS~f~DRFLpsl~r~~~~~~~~~~wll~pv~~snLQLf~lislwIAsK~hE~~   85 (212)
                      ..|+++||||++++++++++|+|.|+||+| +|||++..                ++.+.+|||+|++|+|||||+||+.
T Consensus        47 ~~R~~lvdWl~ev~~~~~l~~eT~~lAv~~-lDRfLs~~----------------~v~~~~lqLvg~tcl~iAsK~eE~~  109 (252)
T 1f5q_B           47 QYRKVLTTWMFCVCKDLRQDNNVFPLAVAL-LDELFLST----------------RIDRENYQSTAAVALHIAGKVRAYM  109 (252)
T ss_dssp             SHHHHHHHHHHHHHHHTTCCTTHHHHHHHH-HHHHHHHS----------------CCCGGGHHHHHHHHHHHHHHHHCSS
T ss_pred             HHHHHHHHHHHHHHHHcCCChHHHHHHHHH-HHHHhcCC----------------CcCHHHHHHHHHHHHHHHHHHHhcC
Confidence            469999999999999999999999999999 99999983                4789999999999999999999999


Q ss_pred             CcchhhhhhcccccccCCccchHHHHHHHHHHHHHhhcccCCcchHHHHHHHHHHHccchhhhhhhhhHHHHHHHHHhhh
Q 028177           86 PVSVKSFKSLGDKIIKDEHFTTRDFLEAEIVFMQVLDFEIGTSNIAFLLLEELLLQFKGVAKVGELLRFEACMDIMDLLY  165 (212)
Q Consensus        86 PlsV~slk~~~d~~ItDq~yT~rdfleaE~~fLkVL~FeIgt~pia~tfLeel~~qf~~vakvg~l~~~e~cm~imdlly  165 (212)
                      ||++++|..     +||+.||++|+++||..+|+.|+|+++. ||++.||+.++.....-.+.-..+ ...|..++++--
T Consensus       110 p~~~~~l~~-----~~~~~yt~~~i~~mE~~IL~~L~w~l~~-pTp~~FL~~~l~~~~~~~~~~~~~-~~~a~~~l~~~l  182 (252)
T 1f5q_B          110 PIKATQLAY-----LCGGATTADKLLTLEVKSLDTLSWVADR-CLSTDLICYILHIMHAPREDYLNI-YNLCRPKIFCAL  182 (252)
T ss_dssp             CCCHHHHHH-----HHCTTCCHHHHHHHHHHHHHHTTTCCCC-CCHHHHHHHHHHHTTCCHHHHHHH-HHHHHHHHHHHH
T ss_pred             CCCHHHHHH-----HhCCCCCHHHHHHHHHHHHHHCCCccCC-CCHHHHHHHHHHHcCCCcchHHHH-HHHHHHHHHHHH
Confidence            999999995     9999999999999999999999999995 999999999965543222211111 112222222211


Q ss_pred             hcccceeeecCccchhhhhh
Q 028177          166 EKEETSTLYRSPRSLAASTL  185 (212)
Q Consensus       166 e~e~ts~l~~sp~slaas~l  185 (212)
                      -  |..++--.|..+|||..
T Consensus       183 ~--d~~~l~~~PS~iAaaa~  200 (252)
T 1f5q_B          183 C--DGRSAMKRPVLITLACM  200 (252)
T ss_dssp             H--CHHHHTSCHHHHHHHHH
T ss_pred             h--chhhhccCHHHHHHHHH
Confidence            1  23344557777787773
>2f2c_A Cyclin homolog, V-cyclin; small molecule inhibitor bound between N-terminal and C-TERM domain of kinase, cell cycle-transferase complex; HET: AP9; 2.80A {Herpesvirus saimiri} SCOP: a.74.1.1 a.74.1.1 PDB: 1jow_A* 2euf_A* 1xo2_A* 1bu2_A Back     alignment and structure
>1g3n_C V-cyclin; cyclin-dependent kinase, INK4 inhibitor, viral cyclin, cell cycle, signaling protein; 2.90A {Human herpesvirus 8} SCOP: a.74.1.1 a.74.1.1 Back     alignment and structure
>2w96_A G1/S-specific cyclin-D1; serine/threonine-protein kinase, chromosomal rearrangement, ATP-binding, transferase, polymorphism, cell division; 2.30A {Homo sapiens} PDB: 2w99_A 2w9f_A 2w9z_A Back     alignment and structure
>2b9r_A Human cyclin B1; cell cycle; 2.90A {Homo sapiens} PDB: 2jgz_B* Back     alignment and structure
>3g33_B CCND3 protein; Ser/Thr protein kinase, cell cycle, phosphorylation, ATP-BIN cell division, disease mutation, kinase; 3.00A {Homo sapiens} Back     alignment and structure
>2cch_B Cyclin A2, cyclin-A; complex(transferase/cell division), ATP-binding, CDK2, cell cycle, cyclin, mitosis, nuclear protein; HET: TPO ATP; 1.7A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 PDB: 1fvv_B* 1jsu_B* 1okv_B 1okw_B* 1ol1_B* 1ol2_B* 1urc_B 1fin_B* 2c5p_B* 2c5o_B* 2i40_B* 2wev_B* 2wfy_B 2whb_B* 3eid_B* 3ej1_B* 3eoc_B* 2wha_B* 2x1n_B* 1vyw_B* ... Back     alignment and structure
>1w98_B Cyclin E, G1/S-specific cyclin E1; cell cycle, transferase; HET: TPO; 2.15A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 Back     alignment and structure
>2i53_A Cyclin K; cell cycle, transcription, cyclin BOX, CDK9, positive transcription elongation factor, P-TEFB; 1.50A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 Back     alignment and structure
>2ivx_A Cyclin-T2; transcription regulation, cell division, phosphorylation, NU protein, cell cycle, transcription; 1.8A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 PDB: 2w2h_A 3mi9_B* 3mia_B* 3tnh_B* 3tni_B* 3blh_B* 3blq_B* 3blr_B* 3lq5_B* 3my1_B* 3tn8_B* Back     alignment and structure
>2pk2_A Cyclin-T1, protein TAT; TAR, twinning, transcription regulation P- TEFB, cell cycle; 2.67A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 PDB: 2w2h_C Back     alignment and structure
>1zp2_A RNA polymerase II holoenzyme cyclin-like subunit; cyclin repeat domains, transcription-cell cycle complex; 3.00A {Schizosaccharomyces pombe} Back     alignment and structure
>3rgf_B Cyclin-C; protein kinase complex, transferase,transcription; HET: BAX; 2.20A {Homo sapiens} Back     alignment and structure
>1jkw_A Cyclin H; cell cycle, cell division, nuclear protein; 2.60A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 PDB: 1kxu_A Back     alignment and structure
>1c9b_A General transcription factor IIB; protein-DNA complex, cyclin-like fold, helix-turn-helix, transcription/DNA complex; 2.65A {Homo sapiens} SCOP: a.74.1.2 a.74.1.2 PDB: 1tfb_A 2phg_A 1vol_A* Back     alignment and structure
>1ais_B TFB TFIIB, protein (transcription initiation factor IIB); hyperthermophIle, ribosome binding, complex (ribosome binding/ DNA); HET: DNA 5IU; 2.10A {Pyrococcus woesei} SCOP: a.74.1.2 a.74.1.2 PDB: 1d3u_B* Back     alignment and structure
>3k7a_M Transcription initiation factor IIB; RNA polymerase II, TFIIB, DNA-binding, DNA- directed RNA polymerase, isopeptide bond, magnesium; 3.80A {Saccharomyces cerevisiae} Back     alignment and structure
>2pmi_B PHO85 cyclin PHO80, aminoglycoside anti; cyclin-dependent kinase, signaling protein,transfera cycle complex; HET: MES AGS; 2.90A {Saccharomyces cerevisiae} PDB: 2pk9_B* Back     alignment and structure
>4bbr_M Transcription initiation factor IIB; RNA polymerase, TFIIB; 3.40A {Saccharomyces cerevisiae} PDB: 3k7a_M 4bbs_M Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 212
d1bu2a1127 a.74.1.1 (A:22-148) Viral cyclin {Herpesvirus saim 4e-09
d1w98b2140 a.74.1.1 (B:88-227) G1/S-specific cyclin-E1 {Human 2e-07
d1g3nc1132 a.74.1.1 (C:16-147) Viral cyclin {Kaposi's sarcoma 2e-07
d1jkwa1151 a.74.1.1 (A:11-161) Cyclin H (mcs2) {Human (Homo s 4e-07
d1f5qb1141 a.74.1.1 (B:6-146) Viral cyclin {Murine herpesviru 8e-07
d2cchb1128 a.74.1.1 (B:181-308) Cyclin A {Cow (Bos taurus) [T 8e-07
d2i53a1144 a.74.1.1 (A:14-157) Cyclin K {Human (Homo sapiens) 6e-05
d2ivxa1143 a.74.1.1 (A:7-149) Cyclin-T2 {Human (Homo sapiens) 4e-04
>d1bu2a1 a.74.1.1 (A:22-148) Viral cyclin {Herpesvirus saimiri [TaxId: 10381]} Length = 127 Back     information, alignment and structure

class: All alpha proteins
fold: Cyclin-like
superfamily: Cyclin-like
family: Cyclin
domain: Viral cyclin
species: Herpesvirus saimiri [TaxId: 10381]

 Score = 50.7 bits (121), Expect = 4e-09
 Identities = 20/115 (17%), Positives = 39/115 (33%), Gaps = 22/115 (19%)

Query: 11  LMEFMIQSAHQLEVSPIVKYSALSLFADRFFPSLTRYTVGSNGKGNWLLQPIRESNLQLF 70
           L+ +M       E+   V   ++S+  DR+                   +   +  LQ  
Sbjct: 34  LLTWMHLLCESFELDKSVFPLSVSIL-DRYLCK----------------KQGTKKTLQKI 76

Query: 71  ALIALWISSKIHDSRPVSVKSFKSLGDKIIKDEHFTTRDFLEAEIVFMQVLDFEI 125
               + I SKI   +P++V     L         FT  + +  E   ++ L ++ 
Sbjct: 77  GAACVLIGSKIRTVKPMTVSKLTYLSCDC-----FTNLELINQEKDILEALKWDT 126
>d1w98b2 a.74.1.1 (B:88-227) G1/S-specific cyclin-E1 {Human (Homo sapiens) [TaxId: 9606]} Length = 140 Back     information, alignment and structure
>d1g3nc1 a.74.1.1 (C:16-147) Viral cyclin {Kaposi's sarcoma-associated herpesvirus [TaxId: 37296]} Length = 132 Back     information, alignment and structure
>d1jkwa1 a.74.1.1 (A:11-161) Cyclin H (mcs2) {Human (Homo sapiens) [TaxId: 9606]} Length = 151 Back     information, alignment and structure
>d1f5qb1 a.74.1.1 (B:6-146) Viral cyclin {Murine herpesvirus 68 [TaxId: 33708]} Length = 141 Back     information, alignment and structure
>d2cchb1 a.74.1.1 (B:181-308) Cyclin A {Cow (Bos taurus) [TaxId: 9913]} Length = 128 Back     information, alignment and structure
>d2i53a1 a.74.1.1 (A:14-157) Cyclin K {Human (Homo sapiens) [TaxId: 9606]} Length = 144 Back     information, alignment and structure
>d2ivxa1 a.74.1.1 (A:7-149) Cyclin-T2 {Human (Homo sapiens) [TaxId: 9606]} Length = 143 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query212
d1bu2a1127 Viral cyclin {Herpesvirus saimiri [TaxId: 10381]} 99.92
d1g3nc1132 Viral cyclin {Kaposi's sarcoma-associated herpesvi 99.91
d1w98b2140 G1/S-specific cyclin-E1 {Human (Homo sapiens) [Tax 99.9
d2cchb1128 Cyclin A {Cow (Bos taurus) [TaxId: 9913]} 99.9
d1f5qb1141 Viral cyclin {Murine herpesvirus 68 [TaxId: 33708] 99.9
d1jkwa1151 Cyclin H (mcs2) {Human (Homo sapiens) [TaxId: 9606 99.72
d2i53a1144 Cyclin K {Human (Homo sapiens) [TaxId: 9606]} 99.67
d2ivxa1143 Cyclin-T2 {Human (Homo sapiens) [TaxId: 9606]} 99.59
d1vola195 Transcription factor IIB (TFIIB), core domain {Hum 94.16
d1aisb198 Transcription factor IIB (TFIIB), core domain {Arc 86.28
>d1bu2a1 a.74.1.1 (A:22-148) Viral cyclin {Herpesvirus saimiri [TaxId: 10381]} Back     information, alignment and structure
class: All alpha proteins
fold: Cyclin-like
superfamily: Cyclin-like
family: Cyclin
domain: Viral cyclin
species: Herpesvirus saimiri [TaxId: 10381]

Probab=99.92  E-value=5.8e-26  Score=172.99  Aligned_cols=98  Identities=19%  Similarity=0.311  Sum_probs=93.7

Q ss_pred             hhHHHHHHHHHHhhhcceeccceeeehhhhhhhhhcCCcccccccCCCCCccccccccccchhHHHHHHHHHHhhhccCC
Q 028177            6 WSWSRLMEFMIQSAHQLEVSPIVKYSALSLFADRFFPSLTRYTVGSNGKGNWLLQPIRESNLQLFALIALWISSKIHDSR   85 (212)
Q Consensus         6 ~~r~~LVdfLve~a~~lel~p~tkYlAvS~f~DRFLpsl~r~~~~~~~~~~wll~pv~~snLQLf~lislwIAsK~hE~~   85 (212)
                      ..|+.++|||++++.+++++++|.|+|+++ +|||++.  +              +++++++||+|++|+|||||++|.+
T Consensus        29 ~~R~~lidWl~~v~~~~~l~~eTl~lAv~l-lDryl~~--~--------------~i~~~~lqLi~~tcL~IAsK~ee~~   91 (127)
T d1bu2a1          29 DNRTILLTWMHLLCESFELDKSVFPLSVSI-LDRYLCK--K--------------QGTKKTLQKIGAACVLIGSKIRTVK   91 (127)
T ss_dssp             HHHHHHHHHHHHHHHHTTCCTTHHHHHHHH-HHHHTTT--S--------------CCCTTTHHHHHHHHHHHHHHHSSSS
T ss_pred             HHHHHHHHHHHHHHHHHCCChHHHHHHHHH-HHHHccc--c--------------cccHHHHHHHHHHHHHHHHHHHhcC
Confidence            479999999999999999999999999999 9999988  2              4889999999999999999999999


Q ss_pred             CcchhhhhhcccccccCCccchHHHHHHHHHHHHHhhccc
Q 028177           86 PVSVKSFKSLGDKIIKDEHFTTRDFLEAEIVFMQVLDFEI  125 (212)
Q Consensus        86 PlsV~slk~~~d~~ItDq~yT~rdfleaE~~fLkVL~FeI  125 (212)
                      ||++++|..     ++++.||.+|+.+||..+|+.|+||+
T Consensus        92 ~~~l~~l~~-----~~~~~~t~~ei~~mE~~IL~~L~~dl  126 (127)
T d1bu2a1          92 PMTVSKLTY-----LSCDCFTNLELINQEKDILEALKWDT  126 (127)
T ss_dssp             CCCHHHHHH-----TTTTSSCHHHHHHHHHHHHHHTTTCC
T ss_pred             CCCHHHHHH-----HHcCCCCHHHHHHHHHHHHHHcCCCC
Confidence            999999996     88999999999999999999999997
>d1g3nc1 a.74.1.1 (C:16-147) Viral cyclin {Kaposi's sarcoma-associated herpesvirus [TaxId: 37296]} Back     information, alignment and structure
>d1w98b2 a.74.1.1 (B:88-227) G1/S-specific cyclin-E1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2cchb1 a.74.1.1 (B:181-308) Cyclin A {Cow (Bos taurus) [TaxId: 9913]} Back     information, alignment and structure
>d1f5qb1 a.74.1.1 (B:6-146) Viral cyclin {Murine herpesvirus 68 [TaxId: 33708]} Back     information, alignment and structure
>d1jkwa1 a.74.1.1 (A:11-161) Cyclin H (mcs2) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2i53a1 a.74.1.1 (A:14-157) Cyclin K {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2ivxa1 a.74.1.1 (A:7-149) Cyclin-T2 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1vola1 a.74.1.2 (A:113-207) Transcription factor IIB (TFIIB), core domain {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1aisb1 a.74.1.2 (B:1108-1205) Transcription factor IIB (TFIIB), core domain {Archaeon Pyrococcus woesei [TaxId: 2262]} Back     information, alignment and structure