Citrus Sinensis ID: 028185

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210--
Protein Sequence
MVSANREMAVYCFDTLVAHYNSEDAPPPAFDEGQHPLFVTWKKVVNGGEPRLRGCIGTLEARCLINGFKDYALTSALKDRRFPPIQARELPSLECTVSILTDFETANNYLDWEVGTHGLIIEFTDPEYSTRRSATYLPEVAAHEGWTKVEAIDSLMRKAGFSGPITESLRKRIRLTRYQSTLFALHYSDYASYVKTTRGAAPSILGAKPGNY
Secondary Structure (PSIPRED)
ccccHHHHHHHHHHHHHHHHcccccccccccccccccEEEEEEEcccccccccccccccccccHHHHHHHHHHHHHcccccccccccccccccEEEEEEEcccEEccccccccccccEEEEEEccccccccEEEEEcccccccccccHHHHHHHHHHHccccccccccccccEEEEEEEEEEEEEEHHHHHHHHHHHccccccccccccccc
Secondary Structure Prediction (SSPRO)
cccccHHHHHHHHHHHHHHHccccccccccccccccEEEEEEEEcccccccccEEEcccccccHHHHHHHHHHHHHHcccccccccHHHccccEEEEEEEccccccccccccEEcccEEEEEEEccccccEEEccccHHHHHHccccHHHHHHHHHHHccccccccHHHHcEEEEEEEcccEEEEcHHHHHHHHHHHccccccccccccccc
Coil and Loop (DISEMBL)
MVSANREMAVYCFDTLVAhynsedapppafdegqhplFVTWKKvvnggeprlrgcigTLEARCLINGFKDYALtsalkdrrfppiqarelpslecTVSILTDFETannyldwevgthgliieftdpeystrrsatylpevaahegwTKVEAIDSLMrkagfsgpitESLRKRIRLTRYQSTLFALHYsdyasyvkttrgaapsilgakpgny
Flexible Loop (DISEMBL)
MVSANREMAVYCFDTLVAHYNSEDAPPPAFDEGQHPLFVTWKKVVNGGEPRLRGCIGTLEARCLINGFKDYALTSALKDRrfppiqarelpsleCTVSILTDFETANNYLDWEVGTHGLIIEFTDPEYSTRRSATYLPEVAAHEGWTKVEAIDSLMRKAGFSGPITESLRKRIRLTRYQSTLFALHYSDYASYVKTtrgaapsilgakpgny
Low Complexity Region (SEG)
MVSANREMAVYCFDTLVAHYNSEDAPPPAFDEGQHPLFVTWKKVVNGGEPRLRGCIGTLEARCLINGFKDYALTSALKDRRFPPIQARELPSLECTVSILTDFETANNYLDWEVGTHGLIIEFTDPEYSTRRSATYLPEVAAHEGWTKVEAIDSLMRKAGFSGPITESLRKRIRLTRYQSTLFALHYSDYASYVKTTRGAAPSILGAKPGNY
Disordered region (IsUnstruct)
*******MAVYCFDTLVAHYNS********DEGQHPLFVTWKKVVNGGEPRLRGCIGTLEARCLINGFKDYALTSALKDRRFPPIQARELPSLECTVSILTDFETANNYLDWEVGTHGLIIEFTDPEYSTRRSATYLPEVAAHEGWTKVEAIDSLMRKAGFSGPITESLRKRIRLTRYQSTLFALHYSDYASYVKTTR**************
Disordered Region (DISOPRED)
**SANREMAVYCFDTLVAHYNSEDAPPPAFDEGQHPLFVTWKKVVNGGEPRLRGCIGTLEARCLINGFKDYALTSALKDRRFPPIQARELPSLECTVSILTDFETANNYLDWEVGTHGLIIEFTDPEYSTRRSATYLPEVAAHEGWTKVEAIDSLMRKAGFSGPITESLRKRIRLTRYQSTLFALHYSDYA*********************
Disordered Region (DISEMBL)
MVSANREMAVYCFDTLVAHYNSEDAPPPAFDEGQHPLFVTWKKVVNGGEPRLRGCIGTLEARCLINGFKDYALTSALKDRRFPPIQARELPSLECTVSILTDFETANNYLDWEVGTHGLIIEFTDPEYSTRRSATYLPEVAAHEGWTKVEAIDSLMRKAGFSGPITESLRKRIRLTRYQSTLFALHYSDYASYVKTTRGAAPSILGAKPGNY
Disordered Region (DISPRO)
*VSANREMAVYCFDTLVAHYNSEDAPPPAFDEGQHPLFVTWKKVVNGGEPRLRGCIGTLEARCLINGFKDYALTSALKDRRFPPIQARELPSLECTVSILTDFETANNYLDWEVGTHGLIIEFTDPEYSTRRSATYLPEVAAHEGWTKVEAIDSLMRKAGFSGPITESLRKRIRLTRYQSTLFALHYSDYASYVKTTRGAAPSILGA*****
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
oooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MVSANREMAVYCFDTLVAHYNSEDAPPPAFDEGQHPLFVTWKKVVNGGEPRLRGCIGTLEARCLINGFKDYALTSALKDRRFPPIQARELPSLECTVSILTDFETANNYLDWEVGTHGLIIEFTDPEYSTRRSATYLPEVAAHEGWTKVEAIDSLMRKAGFSGPITESLRKRIRLTRYQSTLFALHYSDYASYVKTTRGAAPSILGAKPGNY
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	212	2.2.26 [Sep-21-2011]
Q9ZVJ2	214	Uncharacterized protein A	yes	no	0.976	0.967	0.772	3e-97
Q5RDQ3	310	AMMECR1-like protein OS=P	yes	no	0.849	0.580	0.529	2e-50
Q6DCA0	310	AMMECR1-like protein OS=H	yes	no	0.849	0.580	0.529	2e-50
Q8JZZ6	310	AMMECR1-like protein OS=M	no	no	0.849	0.580	0.529	2e-50
Q5RAS7	333	AMME syndrome candidate g	no	no	0.882	0.561	0.515	6e-50
Q9JHT5	344	AMME syndrome candidate g	no	no	0.882	0.543	0.515	6e-50
Q9Y4X0	333	AMME syndrome candidate g	no	no	0.882	0.561	0.515	6e-50
Q9VCF0	243	Uncharacterized protein C	yes	no	0.863	0.753	0.489	5e-47
Q22004	200	Uncharacterized protein R	yes	no	0.900	0.955	0.469	1e-46
Q9URS8	227	Uncharacterized protein K	yes	no	0.773	0.722	0.370	2e-27

>sp|Q9ZVJ2|AMERL_ARATH Uncharacterized protein At2g38710 OS=Arabidopsis thaliana GN=At2g38710 PE=2 SV=1

 Score =  353 bits (907), Expect = 3e-97,   Method: Compositional matrix adjust.
 Identities = 160/207 (77%), Positives = 188/207 (90%)

Query: 1   MVSANREMAVYCFDTLVAHYNSEDAPPPAFDEGQHPLFVTWKKVVNGGEPRLRGCIGTLE 60
           MVSANREMAVYCFDTLV+HYN+E+ PPPAF+E  HPLFVTWKK+VNGGEPRLRGCIGTLE
Sbjct: 1   MVSANREMAVYCFDTLVSHYNNEETPPPAFEEANHPLFVTWKKIVNGGEPRLRGCIGTLE 60

Query: 61  ARCLINGFKDYALTSALKDRRFPPIQARELPSLECTVSILTDFETANNYLDWEVGTHGLI 120
           AR LI+GFKDYALTSAL+DRRFPPIQA+ELPSL+CTVS+LTD+E A +YLDWEVG HG+I
Sbjct: 61  ARRLISGFKDYALTSALRDRRFPPIQAKELPSLQCTVSVLTDYEDAEDYLDWEVGKHGII 120

Query: 121 IEFTDPEYSTRRSATYLPEVAAHEGWTKVEAIDSLMRKAGFSGPITESLRKRIRLTRYQS 180
           IEFT+PE +T+RSATYLPEV AHEGWTK+EAIDSL+RKAG++G ITE++R+RI LTRYQS
Sbjct: 121 IEFTEPETNTKRSATYLPEVPAHEGWTKIEAIDSLVRKAGYNGVITEAVRRRINLTRYQS 180

Query: 181 TLFALHYSDYASYVKTTRGAAPSILGA 207
           TLF++HYS+Y SYVK TRG    ++  
Sbjct: 181 TLFSMHYSEYLSYVKATRGVVGPVING 207

Arabidopsis thaliana (taxid: 3702)

>sp|Q5RDQ3|AMERL_PONAB AMMECR1-like protein OS=Pongo abelii GN=AMMECR1L PE=2 SV=1

 Score =  198 bits (503), Expect = 2e-50,   Method: Compositional matrix adjust.
 Identities = 98/185 (52%), Positives = 123/185 (66%), Gaps = 5/185 (2%)

Query: 7   EMAVYCFDTLVAH-YNSEDAPPPAFDEGQHPLFVTWKKVVNGGEPRLRGCIGTLEARCLI 65
           EM  YCFD L  H Y       P F    +PLFVTWK    G + RLRGCIGT  A  L 
Sbjct: 107 EMCCYCFDVLYCHLYGFPQPRLPRFTNDPYPLFVTWK---TGRDKRLRGCIGTFSAMNLH 163

Query: 66  NGFKDYALTSALKDRRFPPIQARELPSLECTVSILTDFETANNYLDWEVGTHGLIIEFTD 125
           +G ++Y LTSALKD RFPP+   ELP L C+VS+LT+FE A++YLDWEVG HG+ IEF +
Sbjct: 164 SGLREYTLTSALKDSRFPPLTREELPKLFCSVSLLTNFEDASDYLDWEVGVHGIRIEFIN 223

Query: 126 PEYSTRRSATYLPEVAAHEGWTKVEAIDSLMRKAGFSGPITESLRKRIRLTRYQSTLFAL 185
            E   +R+ATYLPEVA  + W +++ IDSL+RK GF  PIT   RK I+LTRY+S    +
Sbjct: 224 -EKGVKRTATYLPEVAKEQDWDQIQTIDSLLRKGGFKAPITSEFRKTIKLTRYRSEKVTI 282

Query: 186 HYSDY 190
            Y++Y
Sbjct: 283 SYAEY 287

Pongo abelii (taxid: 9601)

>sp|Q6DCA0|AMERL_HUMAN AMMECR1-like protein OS=Homo sapiens GN=AMMECR1L PE=1 SV=1

 Score =  198 bits (503), Expect = 2e-50,   Method: Compositional matrix adjust.
 Identities = 98/185 (52%), Positives = 123/185 (66%), Gaps = 5/185 (2%)

Query: 7   EMAVYCFDTLVAH-YNSEDAPPPAFDEGQHPLFVTWKKVVNGGEPRLRGCIGTLEARCLI 65
           EM  YCFD L  H Y       P F    +PLFVTWK    G + RLRGCIGT  A  L 
Sbjct: 107 EMCCYCFDVLYCHLYGFPQPRLPRFTNDPYPLFVTWK---TGRDKRLRGCIGTFSAMNLH 163

Query: 66  NGFKDYALTSALKDRRFPPIQARELPSLECTVSILTDFETANNYLDWEVGTHGLIIEFTD 125
           +G ++Y LTSALKD RFPP+   ELP L C+VS+LT+FE A++YLDWEVG HG+ IEF +
Sbjct: 164 SGLREYTLTSALKDSRFPPLTREELPKLFCSVSLLTNFEDASDYLDWEVGVHGIRIEFIN 223

Query: 126 PEYSTRRSATYLPEVAAHEGWTKVEAIDSLMRKAGFSGPITESLRKRIRLTRYQSTLFAL 185
            E   +R+ATYLPEVA  + W +++ IDSL+RK GF  PIT   RK I+LTRY+S    +
Sbjct: 224 -EKGVKRTATYLPEVAKEQDWDQIQTIDSLLRKGGFKAPITSEFRKTIKLTRYRSEKVTI 282

Query: 186 HYSDY 190
            Y++Y
Sbjct: 283 SYAEY 287

Homo sapiens (taxid: 9606)

>sp|Q8JZZ6|AMERL_MOUSE AMMECR1-like protein OS=Mus musculus GN=Ammecr1l PE=2 SV=1

 Score =  198 bits (503), Expect = 2e-50,   Method: Compositional matrix adjust.
 Identities = 98/185 (52%), Positives = 123/185 (66%), Gaps = 5/185 (2%)

Query: 7   EMAVYCFDTLVAH-YNSEDAPPPAFDEGQHPLFVTWKKVVNGGEPRLRGCIGTLEARCLI 65
           EM  YCFD L  H Y       P F    +PLFVTWK    G + RLRGCIGT  A  L 
Sbjct: 107 EMCCYCFDVLYCHLYGFPQPRLPRFTNDPYPLFVTWK---TGRDKRLRGCIGTFSAMNLH 163

Query: 66  NGFKDYALTSALKDRRFPPIQARELPSLECTVSILTDFETANNYLDWEVGTHGLIIEFTD 125
           +G ++Y LTSALKD RFPP+   ELP L C+VS+LT+FE A++YLDWEVG HG+ IEF +
Sbjct: 164 SGLREYTLTSALKDSRFPPLTREELPKLFCSVSLLTNFEDASDYLDWEVGVHGIRIEFIN 223

Query: 126 PEYSTRRSATYLPEVAAHEGWTKVEAIDSLMRKAGFSGPITESLRKRIRLTRYQSTLFAL 185
            E   +R+ATYLPEVA  + W +++ IDSL+RK GF  PIT   RK I+LTRY+S    +
Sbjct: 224 -EKGIKRTATYLPEVAKEQDWDQIQTIDSLLRKGGFKAPITSEFRKSIKLTRYRSEKVTI 282

Query: 186 HYSDY 190
            Y++Y
Sbjct: 283 SYAEY 287

Mus musculus (taxid: 10090)

>sp|Q5RAS7|AMMR1_PONAB AMME syndrome candidate gene 1 protein homolog OS=Pongo abelii GN=AMMECR1 PE=2 SV=1

 Score =  197 bits (500), Expect = 6e-50,   Method: Compositional matrix adjust.
 Identities = 100/194 (51%), Positives = 129/194 (66%), Gaps = 7/194 (3%)

Query: 1   MVSANREMAVYCFDTLVAH-YNSEDAPPPAFDEGQHPLFVTWKKVVNGGEPRLRGCIGTL 59
           +VSA  EM  +CFD L  H Y  +    P F    +PLFVTWK    G + RLRGCIGT 
Sbjct: 125 VVSA--EMCCFCFDVLYCHLYGYQQPRTPRFTNEPYPLFVTWKI---GRDKRLRGCIGTF 179

Query: 60  EARCLINGFKDYALTSALKDRRFPPIQARELPSLECTVSILTDFETANNYLDWEVGTHGL 119
            A  L +G ++Y LTSALKD RFPP+   ELP L C+VS+LT+FE   +YLDWEVG HG+
Sbjct: 180 SAMNLHSGLREYTLTSALKDSRFPPMTRDELPRLFCSVSLLTNFEDVCDYLDWEVGVHGI 239

Query: 120 IIEFTDPEYSTRRSATYLPEVAAHEGWTKVEAIDSLMRKAGFSGPITESLRKRIRLTRYQ 179
            IEF + E  ++R+ATYLPEVA  +GW  ++ IDSL+RK G+  PIT   RK I+LTRY+
Sbjct: 240 RIEFIN-EKGSKRTATYLPEVAKEQGWDHIQTIDSLLRKGGYKAPITNEFRKTIKLTRYR 298

Query: 180 STLFALHYSDYASY 193
           S    L Y++Y ++
Sbjct: 299 SEKMTLSYAEYLAH 312

Pongo abelii (taxid: 9601)

>sp|Q9JHT5|AMMR1_MOUSE AMME syndrome candidate gene 1 protein homolog OS=Mus musculus GN=Ammecr1 PE=2 SV=1

 Score =  197 bits (500), Expect = 6e-50,   Method: Compositional matrix adjust.
 Identities = 100/194 (51%), Positives = 129/194 (66%), Gaps = 7/194 (3%)

Query: 1   MVSANREMAVYCFDTLVAH-YNSEDAPPPAFDEGQHPLFVTWKKVVNGGEPRLRGCIGTL 59
           +VSA  EM  +CFD L  H Y  +    P F    +PLFVTWK    G + RLRGCIGT 
Sbjct: 136 VVSA--EMCCFCFDVLYCHLYGYQQPRTPRFTNEPYPLFVTWKI---GRDKRLRGCIGTF 190

Query: 60  EARCLINGFKDYALTSALKDRRFPPIQARELPSLECTVSILTDFETANNYLDWEVGTHGL 119
            A  L +G ++Y LTSALKD RFPP+   ELP L C+VS+LT+FE   +YLDWEVG HG+
Sbjct: 191 SAMNLHSGLREYTLTSALKDSRFPPMTRDELPRLFCSVSLLTNFEDVCDYLDWEVGVHGI 250

Query: 120 IIEFTDPEYSTRRSATYLPEVAAHEGWTKVEAIDSLMRKAGFSGPITESLRKRIRLTRYQ 179
            IEF + E  ++R+ATYLPEVA  +GW  ++ IDSL+RK G+  PIT   RK I+LTRY+
Sbjct: 251 RIEFIN-EKGSKRTATYLPEVAKEQGWDHIQTIDSLLRKGGYKAPITNEFRKTIKLTRYR 309

Query: 180 STLFALHYSDYASY 193
           S    L Y++Y ++
Sbjct: 310 SEKMTLSYAEYLAH 323

Mus musculus (taxid: 10090)

>sp|Q9Y4X0|AMMR1_HUMAN AMME syndrome candidate gene 1 protein OS=Homo sapiens GN=AMMECR1 PE=2 SV=1

 Score =  197 bits (500), Expect = 6e-50,   Method: Compositional matrix adjust.
 Identities = 100/194 (51%), Positives = 129/194 (66%), Gaps = 7/194 (3%)

Query: 1   MVSANREMAVYCFDTLVAH-YNSEDAPPPAFDEGQHPLFVTWKKVVNGGEPRLRGCIGTL 59
           +VSA  EM  +CFD L  H Y  +    P F    +PLFVTWK    G + RLRGCIGT 
Sbjct: 125 VVSA--EMCCFCFDVLYCHLYGYQQPRTPRFTNEPYPLFVTWKI---GRDKRLRGCIGTF 179

Query: 60  EARCLINGFKDYALTSALKDRRFPPIQARELPSLECTVSILTDFETANNYLDWEVGTHGL 119
            A  L +G ++Y LTSALKD RFPP+   ELP L C+VS+LT+FE   +YLDWEVG HG+
Sbjct: 180 SAMNLHSGLREYTLTSALKDSRFPPMTRDELPRLFCSVSLLTNFEDVCDYLDWEVGVHGI 239

Query: 120 IIEFTDPEYSTRRSATYLPEVAAHEGWTKVEAIDSLMRKAGFSGPITESLRKRIRLTRYQ 179
            IEF + E  ++R+ATYLPEVA  +GW  ++ IDSL+RK G+  PIT   RK I+LTRY+
Sbjct: 240 RIEFIN-EKGSKRTATYLPEVAKEQGWDHIQTIDSLLRKGGYKAPITNEFRKTIKLTRYR 298

Query: 180 STLFALHYSDYASY 193
           S    L Y++Y ++
Sbjct: 299 SEKMTLSYAEYLAH 312

Homo sapiens (taxid: 9606)

>sp|Q9VCF0|Y5902_DROME Uncharacterized protein CG5902 OS=Drosophila melanogaster GN=CG5902 PE=2 SV=1

 Score =  187 bits (474), Expect = 5e-47,   Method: Compositional matrix adjust.
 Identities = 92/188 (48%), Positives = 121/188 (64%), Gaps = 5/188 (2%)

Query: 7   EMAVYCFDTLVAHYNSEDAPP-PAFDEGQHPLFVTWKKVVNGGEPRLRGCIGTLEARCLI 65
           +M ++CF+ L    N+ D P  P F    +PLFVTWK    G + RLRGCIGT  A  L 
Sbjct: 48  DMCLFCFEVLDCELNNVDGPSVPVFSNDAYPLFVTWKI---GRDKRLRGCIGTFSAMELH 104

Query: 66  NGFKDYALTSALKDRRFPPIQARELPSLECTVSILTDFETANNYLDWEVGTHGLIIEFTD 125
           +G ++YALTSA KD RF PI   ELP L  +VSIL +FE A  +LDW++G HG+ IEF  
Sbjct: 105 HGLREYALTSAFKDSRFAPISRDELPRLTVSVSILQNFEEAQGHLDWQLGVHGIRIEFL- 163

Query: 126 PEYSTRRSATYLPEVAAHEGWTKVEAIDSLMRKAGFSGPITESLRKRIRLTRYQSTLFAL 185
            E   +R+ATYLP+VA  +GW +++ IDSL+RK G+   IT   RK I+LTRY+S    +
Sbjct: 164 TERGCKRTATYLPQVATEQGWDQLQTIDSLLRKGGYRAAITPETRKSIKLTRYRSQEIQM 223

Query: 186 HYSDYASY 193
           HY +Y  Y
Sbjct: 224 HYKEYREY 231

Drosophila melanogaster (taxid: 7227)

>sp|Q22004|AMERL_CAEEL Uncharacterized protein R166.3 OS=Caenorhabditis elegans GN=R166.3 PE=4 SV=1

 Score =  186 bits (471), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 93/198 (46%), Positives = 122/198 (61%), Gaps = 7/198 (3%)

Query: 1   MVSANREMAVYCFDTLVAHYNSEDAPP--PAFDEGQHPLFVTWKKVVNGGEPRLRGCIGT 58
           M SAN +MAVYCFD + A  N E  PP        + PLFVTWKK   G +  LRGCIGT
Sbjct: 1   MTSANIQMAVYCFDVINAQLNREKEPPVPKEIPNVKLPLFVTWKK---GHQHDLRGCIGT 57

Query: 59  LEARCLINGFKDYALTSALKDRRFPPIQARELPSLECTVSILTDFETANNYLDWEVGTHG 118
                L  G  +YA TSA  D RF PI   E+PSL+C VS+L +FE  +N+ DW +G HG
Sbjct: 58  FSDLRLGEGLNEYAKTSAFHDSRFKPISREEVPSLQCGVSLLINFEPIHNFRDWTIGRHG 117

Query: 119 LIIEFTDPEYSTRRSATYLPEVAAHEGWTKVEAIDSLMRKAGFSGPITESLRKRIRLTRY 178
           + + F D   +  RSA +LPEVA  +GW  VE ID L+RK+G+ G I ++LR  +R+ R+
Sbjct: 118 VRMNFDDGHRN--RSAVFLPEVAQEQGWNHVETIDHLIRKSGYGGHINDALRSALRIVRF 175

Query: 179 QSTLFALHYSDYASYVKT 196
           QS+   L Y DY +Y ++
Sbjct: 176 QSSKLVLDYKDYVNYKQS 193

Caenorhabditis elegans (taxid: 6239)

>sp|Q9URS8|Y464_KLULA Uncharacterized protein KLLA0D02464g OS=Kluyveromyces lactis (strain ATCC 8585 / CBS 2359 / DSM 70799 / NBRC 1267 / NRRL Y-1140 / WM37) GN=KLLA0D02464g PE=4 SV=1

 Score =  122 bits (306), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 66/178 (37%), Positives = 102/178 (57%), Gaps = 14/178 (7%)

Query: 36  PLFVTWKKVVNGGEPRLRGCIGTLEARCLINGFKDYALTSALKDRRFPPIQARELPSLEC 95
           PLFVTWKK+   GE +LRGCIGT     +  G K YAL SAL+D RF PI+  EL  L C
Sbjct: 50  PLFVTWKKL-KKGEYQLRGCIGTFSEGKIEEGLKRYALISALQDSRFTPIEREELSQLRC 108

Query: 96  TVSILTDFET---------ANNYLDWEVGTHGLIIEFTDPEYSTRRSATYLPEVAAHEGW 146
             ++L+ F+T         + +  +WE+G HG+ I+F  P+ ++R SAT+LPEV   +GW
Sbjct: 109 GCNLLSQFKTIYSSEGTGNSGDIWNWEIGKHGIEIKFRHPKTNSRMSATFLPEVIPEQGW 168

Query: 147 TKVEAIDSLMRKAGFSGPITESLRKRIR----LTRYQSTLFALHYSDYASYVKTTRGA 200
            + E  ++L+ KAG    + E ++   +    + RY+ T   + + ++ + + T   A
Sbjct: 169 DQRETFENLIEKAGCWNYLEEVMKHWEKYFDEVIRYEGTKSEIAWDEFETGLSTVAEA 226

Kluyveromyces lactis (strain ATCC 8585 / CBS 2359 / DSM 70799 / NBRC 1267 / NRRL Y-1140 / WM37) (taxid: 284590)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	212
359486986	211	PREDICTED: uncharacterized protein At2g3	0.995	1.0	0.867	1e-108
224110148	212	predicted protein [Populus trichocarpa]	1.0	1.0	0.867	1e-107
118481647	212	unknown [Populus trichocarpa]	1.0	1.0	0.858	1e-106
255549418	212	AMME syndrome candidateprotein 1 protein	1.0	1.0	0.867	1e-105
296086563	204	unnamed protein product [Vitis vinifera]	0.962	1.0	0.867	1e-104
359486988	211	PREDICTED: uncharacterized protein At2g3	0.995	1.0	0.838	1e-104
449446293	209	PREDICTED: uncharacterized protein At2g3	0.981	0.995	0.826	1e-101
224097596	212	predicted protein [Populus trichocarpa]	1.0	1.0	0.830	1e-101
116791344	208	unknown [Picea sitchensis] gi|148907626|	0.971	0.990	0.808	7e-97
358346340	211	hypothetical protein MTR_077s0041 [Medic	0.990	0.995	0.796	7e-97

>gi|359486986|ref|XP_002268158.2| PREDICTED: uncharacterized protein At2g38710 isoform 1 [Vitis vinifera]

 Score =  395 bits (1015), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 183/211 (86%), Positives = 198/211 (93%)

Query: 1   MVSANREMAVYCFDTLVAHYNSEDAPPPAFDEGQHPLFVTWKKVVNGGEPRLRGCIGTLE 60
           M SANREMAVYCFDTLVAHYNS+  PPPAFDE QHPLFVTWKKVVNGGEPRLRGCIGTLE
Sbjct: 1   MASANREMAVYCFDTLVAHYNSQQPPPPAFDEAQHPLFVTWKKVVNGGEPRLRGCIGTLE 60

Query: 61  ARCLINGFKDYALTSALKDRRFPPIQARELPSLECTVSILTDFETANNYLDWEVGTHGLI 120
           ARCLINGFKDYALTSAL+DRRFPPIQA+ELP LECTVSILTD+ET  NYLDWE+G HG+I
Sbjct: 61  ARCLINGFKDYALTSALRDRRFPPIQAKELPYLECTVSILTDYETGLNYLDWEIGKHGII 120

Query: 121 IEFTDPEYSTRRSATYLPEVAAHEGWTKVEAIDSLMRKAGFSGPITESLRKRIRLTRYQS 180
           IEFTDP+Y+TRRSATYLPEVAAHEGWTK+EAIDSLMRKAG++G ITE+ RKRIRLTRYQS
Sbjct: 121 IEFTDPDYNTRRSATYLPEVAAHEGWTKMEAIDSLMRKAGYNGTITETQRKRIRLTRYQS 180

Query: 181 TLFALHYSDYASYVKTTRGAAPSILGAKPGN 211
           TLF +HYS+YASYVKTTRGAAP+I G KPGN
Sbjct: 181 TLFTMHYSEYASYVKTTRGAAPTIAGVKPGN 211

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224110148|ref|XP_002315428.1| predicted protein [Populus trichocarpa] gi|222864468|gb|EEF01599.1| predicted protein [Populus trichocarpa]

 Score =  392 bits (1006), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 184/212 (86%), Positives = 198/212 (93%)

Query: 1   MVSANREMAVYCFDTLVAHYNSEDAPPPAFDEGQHPLFVTWKKVVNGGEPRLRGCIGTLE 60
           MV+ANREMAVYCFDTLVAHYNS+DAPP AFDEGQHPLFVTWKKVVNGGEPRLRGCIGTLE
Sbjct: 1   MVAANREMAVYCFDTLVAHYNSDDAPPAAFDEGQHPLFVTWKKVVNGGEPRLRGCIGTLE 60

Query: 61  ARCLINGFKDYALTSALKDRRFPPIQARELPSLECTVSILTDFETANNYLDWEVGTHGLI 120
           AR L+NGF+DYALTSAL+DRRFPPIQA+ELP+LECTVSILT++ETANNYLDWEVGTHGLI
Sbjct: 61  ARYLVNGFRDYALTSALRDRRFPPIQAKELPTLECTVSILTNYETANNYLDWEVGTHGLI 120

Query: 121 IEFTDPEYSTRRSATYLPEVAAHEGWTKVEAIDSLMRKAGFSGPITESLRKRIRLTRYQS 180
           IEFTDP  + RRSATYLPEVAAHEGWTK EAIDSLMRKAG+SG ITESLRK IR+TRYQS
Sbjct: 121 IEFTDPNNNVRRSATYLPEVAAHEGWTKEEAIDSLMRKAGYSGHITESLRKSIRVTRYQS 180

Query: 181 TLFALHYSDYASYVKTTRGAAPSILGAKPGNY 212
           TLF L YSDY SYV+ TRGAAP+I G KPGNY
Sbjct: 181 TLFTLTYSDYVSYVRATRGAAPAINGVKPGNY 212

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|118481647|gb|ABK92765.1| unknown [Populus trichocarpa]

 Score =  389 bits (998), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 182/212 (85%), Positives = 198/212 (93%)

Query: 1   MVSANREMAVYCFDTLVAHYNSEDAPPPAFDEGQHPLFVTWKKVVNGGEPRLRGCIGTLE 60
           MV+ANREMAVYCFDTLVAHYNS+DAPP AFDEGQHPLFVTWKKVVNGGEPRLRGCIGTLE
Sbjct: 1   MVAANREMAVYCFDTLVAHYNSDDAPPAAFDEGQHPLFVTWKKVVNGGEPRLRGCIGTLE 60

Query: 61  ARCLINGFKDYALTSALKDRRFPPIQARELPSLECTVSILTDFETANNYLDWEVGTHGLI 120
           AR L+NGF+DYALTSAL+DRRFPPIQA+ELP+LECTVSILT++ETANNYLDWEVGTHGLI
Sbjct: 61  ARYLVNGFRDYALTSALRDRRFPPIQAKELPTLECTVSILTNYETANNYLDWEVGTHGLI 120

Query: 121 IEFTDPEYSTRRSATYLPEVAAHEGWTKVEAIDSLMRKAGFSGPITESLRKRIRLTRYQS 180
           IEFTDP  + RRSATYLPEVAAHEGWTK EAIDSLMRKAG+SG ITESLRK I++TRYQS
Sbjct: 121 IEFTDPNNNVRRSATYLPEVAAHEGWTKEEAIDSLMRKAGYSGHITESLRKSIQVTRYQS 180

Query: 181 TLFALHYSDYASYVKTTRGAAPSILGAKPGNY 212
           TLF L YSDY SYV+ TRGAAP+I G KPGN+
Sbjct: 181 TLFTLTYSDYVSYVRATRGAAPAINGVKPGNH 212

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255549418|ref|XP_002515762.1| AMME syndrome candidateprotein 1 protein, putative [Ricinus communis] gi|223545090|gb|EEF46601.1| AMME syndrome candidateprotein 1 protein, putative [Ricinus communis]

 Score =  385 bits (990), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 184/212 (86%), Positives = 196/212 (92%)

Query: 1   MVSANREMAVYCFDTLVAHYNSEDAPPPAFDEGQHPLFVTWKKVVNGGEPRLRGCIGTLE 60
           MVSANREMAVYCFDTL+AHYNSE+APPPAFDEGQHPLFVTWKKVVNGGEPRLRGCIGTLE
Sbjct: 1   MVSANREMAVYCFDTLLAHYNSEEAPPPAFDEGQHPLFVTWKKVVNGGEPRLRGCIGTLE 60

Query: 61  ARCLINGFKDYALTSALKDRRFPPIQARELPSLECTVSILTDFETANNYLDWEVGTHGLI 120
           AR LINGF+DYALTSALKDRRFPPIQ +ELPSLECTVSILTD+ETAN+YLDWE+G HGLI
Sbjct: 61  ARYLINGFRDYALTSALKDRRFPPIQPKELPSLECTVSILTDYETANSYLDWEIGKHGLI 120

Query: 121 IEFTDPEYSTRRSATYLPEVAAHEGWTKVEAIDSLMRKAGFSGPITESLRKRIRLTRYQS 180
           IEF D   +TRRSATYLPEVAAHEGWTKVEAIDSL+RKAG+ G ITE+LRK IRLTRYQS
Sbjct: 121 IEFIDSNNNTRRSATYLPEVAAHEGWTKVEAIDSLVRKAGYGGHITEALRKSIRLTRYQS 180

Query: 181 TLFALHYSDYASYVKTTRGAAPSILGAKPGNY 212
           TLF L YSDYASYVK TRG APSI GAKP N+
Sbjct: 181 TLFTLTYSDYASYVKATRGTAPSINGAKPINH 212

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|296086563|emb|CBI32198.3| unnamed protein product [Vitis vinifera]

 Score =  382 bits (982), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 177/204 (86%), Positives = 192/204 (94%)

Query: 8   MAVYCFDTLVAHYNSEDAPPPAFDEGQHPLFVTWKKVVNGGEPRLRGCIGTLEARCLING 67
           MAVYCFDTLVAHYNS+  PPPAFDE QHPLFVTWKKVVNGGEPRLRGCIGTLEARCLING
Sbjct: 1   MAVYCFDTLVAHYNSQQPPPPAFDEAQHPLFVTWKKVVNGGEPRLRGCIGTLEARCLING 60

Query: 68  FKDYALTSALKDRRFPPIQARELPSLECTVSILTDFETANNYLDWEVGTHGLIIEFTDPE 127
           FKDYALTSAL+DRRFPPIQA+ELP LECTVSILTD+ET  NYLDWE+G HG+IIEFTDP+
Sbjct: 61  FKDYALTSALRDRRFPPIQAKELPYLECTVSILTDYETGLNYLDWEIGKHGIIIEFTDPD 120

Query: 128 YSTRRSATYLPEVAAHEGWTKVEAIDSLMRKAGFSGPITESLRKRIRLTRYQSTLFALHY 187
           Y+TRRSATYLPEVAAHEGWTK+EAIDSLMRKAG++G ITE+ RKRIRLTRYQSTLF +HY
Sbjct: 121 YNTRRSATYLPEVAAHEGWTKMEAIDSLMRKAGYNGTITETQRKRIRLTRYQSTLFTMHY 180

Query: 188 SDYASYVKTTRGAAPSILGAKPGN 211
           S+YASYVKTTRGAAP+I G KPGN
Sbjct: 181 SEYASYVKTTRGAAPTIAGVKPGN 204

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359486988|ref|XP_003633501.1| PREDICTED: uncharacterized protein At2g38710 isoform 2 [Vitis vinifera]

 Score =  382 bits (982), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 177/211 (83%), Positives = 195/211 (92%)

Query: 1   MVSANREMAVYCFDTLVAHYNSEDAPPPAFDEGQHPLFVTWKKVVNGGEPRLRGCIGTLE 60
           MV ANREM VYCFD LVAHYNS+ +PPPAF++   PLFVTWKKVVNGGEPRLRGCIGTLE
Sbjct: 1   MVPANREMVVYCFDILVAHYNSQKSPPPAFEDAYFPLFVTWKKVVNGGEPRLRGCIGTLE 60

Query: 61  ARCLINGFKDYALTSALKDRRFPPIQARELPSLECTVSILTDFETANNYLDWEVGTHGLI 120
           ARCLINGFKDYALTSAL+DRRFPPIQA+ELP LECTVSILTD+ET  NYLDWE+G HG+I
Sbjct: 61  ARCLINGFKDYALTSALRDRRFPPIQAKELPYLECTVSILTDYETGLNYLDWEIGKHGII 120

Query: 121 IEFTDPEYSTRRSATYLPEVAAHEGWTKVEAIDSLMRKAGFSGPITESLRKRIRLTRYQS 180
           IEFTDP+Y+TRRSATYLPEVAAHEGWTK+EAIDSLMRKAG++G ITE+ RKRIRLTRYQS
Sbjct: 121 IEFTDPDYNTRRSATYLPEVAAHEGWTKMEAIDSLMRKAGYNGTITETQRKRIRLTRYQS 180

Query: 181 TLFALHYSDYASYVKTTRGAAPSILGAKPGN 211
           TLF +HYS+YASYVKTTRGAAP+I G KPGN
Sbjct: 181 TLFTMHYSEYASYVKTTRGAAPTIAGVKPGN 211

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449446293|ref|XP_004140906.1| PREDICTED: uncharacterized protein At2g38710-like [Cucumis sativus] gi|449526983|ref|XP_004170492.1| PREDICTED: uncharacterized protein At2g38710-like [Cucumis sativus]

 Score =  374 bits (959), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 172/208 (82%), Positives = 188/208 (90%)

Query: 1   MVSANREMAVYCFDTLVAHYNSEDAPPPAFDEGQHPLFVTWKKVVNGGEPRLRGCIGTLE 60
           MVSANREM VYCFDTL+AHYN E+APPPAFD GQHPLFVTWKKVVNGGEPRLRGCIGTLE
Sbjct: 1   MVSANREMVVYCFDTLLAHYNGEEAPPPAFDGGQHPLFVTWKKVVNGGEPRLRGCIGTLE 60

Query: 61  ARCLINGFKDYALTSALKDRRFPPIQARELPSLECTVSILTDFETANNYLDWEVGTHGLI 120
           ARCLINGFKDYAL SAL+DRRFPPIQ +ELP LECTVSIL D+E A NYLDWEVG HG+I
Sbjct: 61  ARCLINGFKDYALNSALRDRRFPPIQPKELPYLECTVSILVDYEIATNYLDWEVGKHGII 120

Query: 121 IEFTDPEYSTRRSATYLPEVAAHEGWTKVEAIDSLMRKAGFSGPITESLRKRIRLTRYQS 180
           IEF DP+Y+ RRSATYLPEVAAHEGWTK+EAIDSLMRKAG++G ITESLRK IRLTRYQS
Sbjct: 121 IEFNDPDYNARRSATYLPEVAAHEGWTKIEAIDSLMRKAGYNGVITESLRKCIRLTRYQS 180

Query: 181 TLFALHYSDYASYVKTTRGAAPSILGAK 208
           TLF +HY +Y SYVKT RG+ P ++GAK
Sbjct: 181 TLFTMHYGEYVSYVKTIRGSTPCVVGAK 208

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224097596|ref|XP_002311003.1| predicted protein [Populus trichocarpa] gi|222850823|gb|EEE88370.1| predicted protein [Populus trichocarpa]

 Score =  373 bits (958), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 176/212 (83%), Positives = 192/212 (90%)

Query: 1   MVSANREMAVYCFDTLVAHYNSEDAPPPAFDEGQHPLFVTWKKVVNGGEPRLRGCIGTLE 60
           MV+ANREMA YCFDTLVAHYNSEDAPPPAFDEGQHPLFVTWKKVVNGGEP LRGCIGTLE
Sbjct: 1   MVAANREMAAYCFDTLVAHYNSEDAPPPAFDEGQHPLFVTWKKVVNGGEPHLRGCIGTLE 60

Query: 61  ARCLINGFKDYALTSALKDRRFPPIQARELPSLECTVSILTDFETANNYLDWEVGTHGLI 120
           A+ +I GF+DYALTSAL+DRRFPPIQA+ELP+LECTVSILTD+ETAN+YLDWEVG HGL+
Sbjct: 61  AQYIITGFRDYALTSALRDRRFPPIQAKELPTLECTVSILTDYETANHYLDWEVGKHGLV 120

Query: 121 IEFTDPEYSTRRSATYLPEVAAHEGWTKVEAIDSLMRKAGFSGPITESLRKRIRLTRYQS 180
           IEFTDP  + RRSATYLPEVAAHEGWT+ EAIDSLMRKAGFSG IT+ LRK IR+TRYQS
Sbjct: 121 IEFTDPNNNARRSATYLPEVAAHEGWTREEAIDSLMRKAGFSGHITDILRKSIRVTRYQS 180

Query: 181 TLFALHYSDYASYVKTTRGAAPSILGAKPGNY 212
           TLF L YSDY SYV+ TRGAAPSI G K  N+
Sbjct: 181 TLFTLTYSDYVSYVRETRGAAPSINGVKHVNH 212

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|116791344|gb|ABK25944.1| unknown [Picea sitchensis] gi|148907626|gb|ABR16942.1| unknown [Picea sitchensis] gi|224285396|gb|ACN40421.1| unknown [Picea sitchensis]

 Score =  358 bits (920), Expect = 7e-97,   Method: Compositional matrix adjust.
 Identities = 169/209 (80%), Positives = 189/209 (90%), Gaps = 3/209 (1%)

Query: 1   MVSANREMAVYCFDTLVAHYNSEDAPPPAFDEGQHPLFVTWKKVVNGGEPRLRGCIGTLE 60
           MVSAN+EM VYCFDTLVAHY SE  PPPAFDEGQHPLFVTWKKVV GGEPRLRGCIGTLE
Sbjct: 1   MVSANKEMVVYCFDTLVAHYTSELVPPPAFDEGQHPLFVTWKKVV-GGEPRLRGCIGTLE 59

Query: 61  ARCLINGFKDYALTSALKDRRFPPIQARELPSLECTVSILTDFETANNYLDWEVGTHGLI 120
           ARCL NGFKDYALTSAL+DRRFPPIQARE+P LECTVSILTD+E A NYLDWEVG HG+I
Sbjct: 60  ARCLFNGFKDYALTSALRDRRFPPIQAREIPYLECTVSILTDYEPAANYLDWEVGKHGMI 119

Query: 121 IEFTDPEYSTRRSATYLPEVAAHEGWTKVEAIDSLMRKAGFSGPITESLRKRIRLTRYQS 180
           +EF+DP+ +TRRSATYLPEVAA EGWTK E IDSLMRK+G+ GPITESLRKR+R+TRYQS
Sbjct: 120 MEFSDPD-NTRRSATYLPEVAAQEGWTKTETIDSLMRKSGYMGPITESLRKRVRITRYQS 178

Query: 181 TLFALHYSDYASYVKTTRGAAPSILGAKP 209
           TL+ +HYSDY ++VK TRGAAP ++G +P
Sbjct: 179 TLYTMHYSDYVTFVKKTRGAAP-LIGTRP 206

Source: Picea sitchensis

Species: Picea sitchensis

Genus: Picea

Family: Pinaceae

Order: Coniferales

Class: Coniferopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|358346340|ref|XP_003637227.1| hypothetical protein MTR_077s0041 [Medicago truncatula] gi|355503162|gb|AES84365.1| hypothetical protein MTR_077s0041 [Medicago truncatula] gi|388502294|gb|AFK39213.1| unknown [Medicago truncatula]

 Score =  358 bits (919), Expect = 7e-97,   Method: Compositional matrix adjust.
 Identities = 168/211 (79%), Positives = 191/211 (90%), Gaps = 1/211 (0%)

Query: 1   MVSANREMAVYCFDTLVAHYNSEDAPPPAFDEGQHPLFVTWKKVVNGGEPRLRGCIGTLE 60
           MV+AN+EM VYCFDTLVAHYN +  P P+FD+GQHPLFVTWKKVVNGGEPRLRGCIG+LE
Sbjct: 1   MVTANKEMVVYCFDTLVAHYNGDQPPTPSFDDGQHPLFVTWKKVVNGGEPRLRGCIGSLE 60

Query: 61  ARCLINGFKDYALTSALKDRRFPPIQARELPSLECTVSILTDFETANNYLDWEVGTHGLI 120
           AR LINGF+DYALTSAL+DRRFPPI+ARELP LECTVSILTD+ETAN+YLDWEVG HG+I
Sbjct: 61  ARGLINGFRDYALTSALRDRRFPPIEARELPLLECTVSILTDYETANDYLDWEVGKHGII 120

Query: 121 IEFTDPEYSTRRSATYLPEVAAHEGWTKVEAIDSLMRKAGFSGPITESLRKRIRLTRYQS 180
           IEF+DP+Y+TRRSATYLPEVAAHEGWT +EAIDSL+RKAG +  IT+SLRK I+LTRYQS
Sbjct: 121 IEFSDPDYNTRRSATYLPEVAAHEGWTPLEAIDSLIRKAGCNSRITDSLRKSIKLTRYQS 180

Query: 181 TLFALHYSDYASYVKTTRGAAPSILGAK-PG 210
           TLF +HY +Y SYVK TRG APSI+G K PG
Sbjct: 181 TLFTMHYGEYFSYVKETRGEAPSIVGVKLPG 211

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	212
TAIR|locus:2064189	214	AT2G38710 [Arabidopsis thalian	0.971	0.962	0.787	8.3e-90
MGI|MGI:2442711	310	Ammecr1l "AMME chromosomal reg	0.849	0.580	0.529	2.3e-48
UNIPROTKB|Q9Y4X0	333	AMMECR1 "AMME syndrome candida	0.882	0.561	0.515	6e-48
MGI|MGI:1860206	344	Ammecr1 "Alport syndrome, ment	0.882	0.543	0.515	6e-48
ZFIN|ZDB-GENE-040426-1533	371	ammecr1 "Alport syndrome, ment	0.882	0.504	0.510	6e-48
DICTYBASE|DDB_G0283437	206	DDB_G0283437 "AMMECR1 family p	0.915	0.941	0.482	1.1e-46
FB|FBgn0039136	243	CG5902 [Drosophila melanogaste	0.863	0.753	0.489	1.5e-44
ASPGD|ASPL0000039689	343	AN3064 [Emericella nidulans (t	0.698	0.431	0.466	7.1e-34
POMBASE|SPAC688.03c	193	SPAC688.03c "human AMMECR1 hom	0.844	0.927	0.398	1e-27
SGD|S000005815	251	YOR289W "Putative protein of u	0.75	0.633	0.357	4.2e-24

TAIR|locus:2064189 AT2G38710 [Arabidopsis thaliana (taxid:3702)]

 Score = 896 (320.5 bits), Expect = 8.3e-90, P = 8.3e-90
 Identities = 163/207 (78%), Positives = 189/207 (91%)

Query:     1 MVSANREMAVYCFDTLVAHYNSEDAPPPAFDEGQHPLFVTWKKVVNGGEPRLRGCIGTLE 60
             MVSANREMAVYCFDTLV+HYN+E+ PPPAF+E  HPLFVTWKK+VNGGEPRLRGCIGTLE
Sbjct:     1 MVSANREMAVYCFDTLVSHYNNEETPPPAFEEANHPLFVTWKKIVNGGEPRLRGCIGTLE 60

Query:    61 ARCLINGFKDYALTSALKDRRFPPIQARELPSLECTVSILTDFETANNYLDWEVGTHGLI 120
             AR LI+GFKDYALTSAL+DRRFPPIQA+ELPSL+CTVS+LTD+E A +YLDWEVG HG+I
Sbjct:    61 ARRLISGFKDYALTSALRDRRFPPIQAKELPSLQCTVSVLTDYEDAEDYLDWEVGKHGII 120

Query:   121 IEFTDPEYSTRRSATYLPEVAAHEGWTKVEAIDSLMRKAGFSGPITESLRKRIRLTRYQS 180
             IEFT+PE +T+RSATYLPEV AHEGWTK+EAIDSL+RKAG++G ITE++R+RI LTRYQS
Sbjct:   121 IEFTEPETNTKRSATYLPEVPAHEGWTKIEAIDSLVRKAGYNGVITEAVRRRINLTRYQS 180

Query:   181 TLFALHYSDYASYVKTTRGAA-PSILG 206
             TLF++HYS+Y SYVK TRG   P I G
Sbjct:   181 TLFSMHYSEYLSYVKATRGVVGPVING 207

GO:0009651 "response to salt stress" evidence=IEP

GO:0005829 "cytosol" evidence=IDA

MGI|MGI:2442711 Ammecr1l "AMME chromosomal region gene 1-like" [Mus musculus (taxid:10090)]

 Score = 505 (182.8 bits), Expect = 2.3e-48, P = 2.3e-48
 Identities = 98/185 (52%), Positives = 123/185 (66%)

Query:     7 EMAVYCFDTLVAH-YNSEDAPPPAFDEGQHPLFVTWKKVVNGGEPRLRGCIGTLEARCLI 65
             EM  YCFD L  H Y       P F    +PLFVTWK    G + RLRGCIGT  A  L 
Sbjct:   107 EMCCYCFDVLYCHLYGFPQPRLPRFTNDPYPLFVTWK---TGRDKRLRGCIGTFSAMNLH 163

Query:    66 NGFKDYALTSALKDRRFPPIQARELPSLECTVSILTDFETANNYLDWEVGTHGLIIEFTD 125
             +G ++Y LTSALKD RFPP+   ELP L C+VS+LT+FE A++YLDWEVG HG+ IEF +
Sbjct:   164 SGLREYTLTSALKDSRFPPLTREELPKLFCSVSLLTNFEDASDYLDWEVGVHGIRIEFIN 223

Query:   126 PEYSTRRSATYLPEVAAHEGWTKVEAIDSLMRKAGFSGPITESLRKRIRLTRYQSTLFAL 185
              E   +R+ATYLPEVA  + W +++ IDSL+RK GF  PIT   RK I+LTRY+S    +
Sbjct:   224 -EKGIKRTATYLPEVAKEQDWDQIQTIDSLLRKGGFKAPITSEFRKSIKLTRYRSEKVTI 282

Query:   186 HYSDY 190
              Y++Y
Sbjct:   283 SYAEY 287

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

UNIPROTKB|Q9Y4X0 AMMECR1 "AMME syndrome candidate gene 1 protein" [Homo sapiens (taxid:9606)]

 Score = 501 (181.4 bits), Expect = 6.0e-48, P = 6.0e-48
 Identities = 100/194 (51%), Positives = 129/194 (66%)

Query:     1 MVSANREMAVYCFDTLVAH-YNSEDAPPPAFDEGQHPLFVTWKKVVNGGEPRLRGCIGTL 59
             +VSA  EM  +CFD L  H Y  +    P F    +PLFVTWK    G + RLRGCIGT 
Sbjct:   125 VVSA--EMCCFCFDVLYCHLYGYQQPRTPRFTNEPYPLFVTWKI---GRDKRLRGCIGTF 179

Query:    60 EARCLINGFKDYALTSALKDRRFPPIQARELPSLECTVSILTDFETANNYLDWEVGTHGL 119
              A  L +G ++Y LTSALKD RFPP+   ELP L C+VS+LT+FE   +YLDWEVG HG+
Sbjct:   180 SAMNLHSGLREYTLTSALKDSRFPPMTRDELPRLFCSVSLLTNFEDVCDYLDWEVGVHGI 239

Query:   120 IIEFTDPEYSTRRSATYLPEVAAHEGWTKVEAIDSLMRKAGFSGPITESLRKRIRLTRYQ 179
              IEF + E  ++R+ATYLPEVA  +GW  ++ IDSL+RK G+  PIT   RK I+LTRY+
Sbjct:   240 RIEFIN-EKGSKRTATYLPEVAKEQGWDHIQTIDSLLRKGGYKAPITNEFRKTIKLTRYR 298

Query:   180 STLFALHYSDYASY 193
             S    L Y++Y ++
Sbjct:   299 SEKMTLSYAEYLAH 312

GO:0008150 "biological_process" evidence=ND

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

MGI|MGI:1860206 Ammecr1 "Alport syndrome, mental retardation, midface hypoplasia and elliptocytosis chromosomal region gene 1" [Mus musculus (taxid:10090)]

 Score = 501 (181.4 bits), Expect = 6.0e-48, P = 6.0e-48
 Identities = 100/194 (51%), Positives = 129/194 (66%)

Query:     1 MVSANREMAVYCFDTLVAH-YNSEDAPPPAFDEGQHPLFVTWKKVVNGGEPRLRGCIGTL 59
             +VSA  EM  +CFD L  H Y  +    P F    +PLFVTWK    G + RLRGCIGT 
Sbjct:   136 VVSA--EMCCFCFDVLYCHLYGYQQPRTPRFTNEPYPLFVTWKI---GRDKRLRGCIGTF 190

Query:    60 EARCLINGFKDYALTSALKDRRFPPIQARELPSLECTVSILTDFETANNYLDWEVGTHGL 119
              A  L +G ++Y LTSALKD RFPP+   ELP L C+VS+LT+FE   +YLDWEVG HG+
Sbjct:   191 SAMNLHSGLREYTLTSALKDSRFPPMTRDELPRLFCSVSLLTNFEDVCDYLDWEVGVHGI 250

Query:   120 IIEFTDPEYSTRRSATYLPEVAAHEGWTKVEAIDSLMRKAGFSGPITESLRKRIRLTRYQ 179
              IEF + E  ++R+ATYLPEVA  +GW  ++ IDSL+RK G+  PIT   RK I+LTRY+
Sbjct:   251 RIEFIN-EKGSKRTATYLPEVAKEQGWDHIQTIDSLLRKGGYKAPITNEFRKTIKLTRYR 309

Query:   180 STLFALHYSDYASY 193
             S    L Y++Y ++
Sbjct:   310 SEKMTLSYAEYLAH 323

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

ZFIN|ZDB-GENE-040426-1533 ammecr1 "Alport syndrome, mental retardation, midface hypoplasia and elliptocytosis chromosomal region gene 1 homolog (human)" [Danio rerio (taxid:7955)]

 Score = 501 (181.4 bits), Expect = 6.0e-48, P = 6.0e-48
 Identities = 99/194 (51%), Positives = 129/194 (66%)

Query:     1 MVSANREMAVYCFDTLVAH-YNSEDAPPPAFDEGQHPLFVTWKKVVNGGEPRLRGCIGTL 59
             +VSA  EM  +CFD L  H Y  +    P F    +PLFVTWK    G + RLRGCIGT 
Sbjct:   163 VVSA--EMCCFCFDVLYCHLYGYQPPRTPRFTNDPYPLFVTWKI---GRDKRLRGCIGTF 217

Query:    60 EARCLINGFKDYALTSALKDRRFPPIQARELPSLECTVSILTDFETANNYLDWEVGTHGL 119
              A  L +G ++Y LTSALKD RFPP+   ELP L C+VS+LT+FE   +YLDWEVG HG+
Sbjct:   218 SAMNLHSGLREYTLTSALKDSRFPPMTRDELPRLFCSVSLLTNFEDVGDYLDWEVGVHGI 277

Query:   120 IIEFTDPEYSTRRSATYLPEVAAHEGWTKVEAIDSLMRKAGFSGPITESLRKRIRLTRYQ 179
              IEF + E  ++R+ATYLPEVA  +GW  ++ IDSL+RK G+  PIT   RK I+LTRY+
Sbjct:   278 RIEFFN-EKGSKRTATYLPEVAKEQGWDHIQTIDSLLRKGGYKAPITNDFRKTIKLTRYR 336

Query:   180 STLFALHYSDYASY 193
             S    + Y++Y ++
Sbjct:   337 SEKMTMSYAEYIAH 350

GO:0008150 "biological_process" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0003674 "molecular_function" evidence=ND

DICTYBASE|DDB_G0283437 DDB_G0283437 "AMMECR1 family protein" [Dictyostelium discoideum (taxid:44689)]

 Score = 489 (177.2 bits), Expect = 1.1e-46, P = 1.1e-46
 Identities = 94/195 (48%), Positives = 126/195 (64%)

Query:     4 ANREMAVYCFDTLVAHYNSEDAPPPAFDEGQHPLFVTWK-KVVNGGEPRLRGCIGTLEAR 62
             A +EM  YCFD+L+ H+ ++    P F     PLFVTWK    N  EP LRGCIGT   +
Sbjct:    10 ATKEMVAYCFDSLIFHFENKPIYKPKFSNESSPLFVTWKIDNKNYDEPILRGCIGTFAEK 69

Query:    63 CLINGFKDYALTSALKDRRFPPIQARELPSLECTVSILTDFETANNYLDWEVGTHGLIIE 122
              L+ G   +ALTSALKD RF  I  +EL  L C VS+L  FET ++  DWE+GTHG+ IE
Sbjct:    70 NLVEGLHKFALTSALKDSRFSAITKKELTKLHCAVSLLVKFETVDSVWDWEIGTHGIWIE 129

Query:   123 FTDPEYSTRRSATYLPEVAAHEGWTKVEAIDSLMRKAGFSGPITESLRKRIRLTRYQSTL 182
             FTDP  +   ++TYLP+V   + WTK EAI SL++KAG++G + ++    I+LTRYQS+ 
Sbjct:   130 FTDPNTNQSSNSTYLPDVIPEQEWTKEEAIRSLIKKAGYNGKVDDNFFSLIKLTRYQSSK 189

Query:   183 FALHYSDYASYVKTT 197
              +L YS++  Y K T
Sbjct:   190 DSLSYSEFLEYKKAT 204

GO:0008150 "biological_process" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0003674 "molecular_function" evidence=ND

FB|FBgn0039136 CG5902 [Drosophila melanogaster (taxid:7227)]

 Score = 469 (170.2 bits), Expect = 1.5e-44, P = 1.5e-44
 Identities = 92/188 (48%), Positives = 121/188 (64%)

Query:     7 EMAVYCFDTLVAHYNSEDAPP-PAFDEGQHPLFVTWKKVVNGGEPRLRGCIGTLEARCLI 65
             +M ++CF+ L    N+ D P  P F    +PLFVTWK    G + RLRGCIGT  A  L 
Sbjct:    48 DMCLFCFEVLDCELNNVDGPSVPVFSNDAYPLFVTWKI---GRDKRLRGCIGTFSAMELH 104

Query:    66 NGFKDYALTSALKDRRFPPIQARELPSLECTVSILTDFETANNYLDWEVGTHGLIIEFTD 125
             +G ++YALTSA KD RF PI   ELP L  +VSIL +FE A  +LDW++G HG+ IEF  
Sbjct:   105 HGLREYALTSAFKDSRFAPISRDELPRLTVSVSILQNFEEAQGHLDWQLGVHGIRIEFLT 164

Query:   126 PEYSTRRSATYLPEVAAHEGWTKVEAIDSLMRKAGFSGPITESLRKRIRLTRYQSTLFAL 185
              E   +R+ATYLP+VA  +GW +++ IDSL+RK G+   IT   RK I+LTRY+S    +
Sbjct:   165 -ERGCKRTATYLPQVATEQGWDQLQTIDSLLRKGGYRAAITPETRKSIKLTRYRSQEIQM 223

Query:   186 HYSDYASY 193
             HY +Y  Y
Sbjct:   224 HYKEYREY 231

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

GO:0003674 "molecular_function" evidence=ND

ASPGD|ASPL0000039689 AN3064 [Emericella nidulans (taxid:162425)]

 Score = 339 (124.4 bits), Expect = 7.1e-34, Sum P(2) = 7.1e-34
 Identities = 70/150 (46%), Positives = 88/150 (58%)

Query:    32 EGQHPLFVTWKKVVNGGEPRLRGCIGTLEARCLINGFKDYALTSALKDRRFPPIQARELP 91
             E ++PLFVTW  +   G   LRGCIGT EA+ L +G K YALTSA  D RF PI    +P
Sbjct:   139 EQKYPLFVTWNTLSKSGRKSLRGCIGTFEAQELSHGLKSYALTSAFDDTRFSPIPKSLIP 198

Query:    92 SLECTVSILTDFETANNYLDWEVGTHGLIIEFTDPEYSTRRSATYLPEVAAHEGWTKVEA 151
             SL C++++L  FE   + LDW +GTHG+ I F       R  ATYLP+V   +GWTK E 
Sbjct:   199 SLSCSLTLLGSFEPCTSALDWTLGTHGIRISFI--HRGRRFGATYLPDVPVEQGWTKEET 256

Query:   152 IDSLMRKAGFSGPITESLRKRIRLTRYQST 181
             I SLM KAG+ G   +      R  R  S+
Sbjct:   257 IKSLMHKAGWDGSSHQESSSHRRFLRGSSS 286

GO:0008150 "biological_process" evidence=ND

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

POMBASE|SPAC688.03c SPAC688.03c "human AMMECR1 homolog" [Schizosaccharomyces pombe (taxid:4896)]

 Score = 310 (114.2 bits), Expect = 1.0e-27, P = 1.0e-27
 Identities = 75/188 (39%), Positives = 101/188 (53%)

Query:     6 REMAVYCFDTLVA---HYNSEDAPPPAFDEGQHPLFVTWKKVVNGGEPRLRGCIGTLEAR 62
             +E   YCF+ + A   H    D           PLFV +     G + +LRGCIGT  AR
Sbjct:     4 KEYCYYCFEVVAATLEHRKVRDKWNAKSWTRSIPLFVKFASG-KGHDKQLRGCIGTFRAR 62

Query:    63 CLINGFKDYALTSALKDRRFPPIQARELPSLECTVSILTDFETANNYLDWEVGTHGLIIE 122
              L+     ++  +A  D RF PI   EL  LEC + +L DFE  ++ LDWEVG HG+ I+
Sbjct:    63 PLVTNLTYFSKQAAFCDERFRPISLGELALLECQIDLLVDFEPIDDPLDWEVGIHGVSIK 122

Query:   123 FTDPEYSTRRSATYLPEVAAHEGWTKVEAIDSLMRKAGFSGPITESLRKRIRLTRYQSTL 182
             FT      R S+TYLP VAA + W + E ++SL+ KAG+ G I  SL+  I  TRY+S  
Sbjct:   123 FT--ANGIRYSSTYLPSVAAEQRWDQEETLESLIHKAGYYGSI-RSLQ--ITATRYKSLE 177

Query:   183 FALHYSDY 190
                 Y +Y
Sbjct:   178 IGCTYEEY 185

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISO;IDA

GO:0005737 "cytoplasm" evidence=ISO

GO:0005829 "cytosol" evidence=IDA

GO:0008150 "biological_process" evidence=ND

SGD|S000005815 YOR289W "Putative protein of unknown function" [Saccharomyces cerevisiae (taxid:4932)]

 Score = 276 (102.2 bits), Expect = 4.2e-24, P = 4.2e-24
 Identities = 64/179 (35%), Positives = 99/179 (55%)

Query:    37 LFVTWKK------VVNGGEPR--LRGCIGTLEARCLINGFKDYALTSALKDRRFPPIQAR 88
             LF+TWKK       ++  E    LRGCIGT     + +G + Y+L +AL+DRRF PIQ R
Sbjct:    69 LFITWKKKSNKHHTIDTNEENYILRGCIGTFAKMPIAHGIEKYSLIAALEDRRFSPIQKR 128

Query:    89 ELPSLECTVSILTDFETA--------NNYLDWEVGTHGLIIEFTDPEYSTRRSATYLPEV 140
             EL  L+C+ +IL +F+T          +  DWE+G HG+ + F  P+  T  SAT+LP+V
Sbjct:   129 ELVDLKCSCNILGNFKTIFRGGGNPNGDIFDWELGKHGIELYFKHPKTGTTCSATFLPDV 188

Query:   141 AAHEGWTKVEAIDSLMRKAGFSGPITESLRKR----IRLTRYQSTLFALHYSDYASYVK 195
                + W K +   +L+ KAG+ G I+E +       I + RY+    ++ Y ++   +K
Sbjct:   189 MPEQHWNKEDTFANLIEKAGYWGNISEVMDNFETYFIEVIRYEGKKSSITYEEFNKQLK 247

GO:0005737 "cytoplasm" evidence=IDA

GO:0005634 "nucleus" evidence=IDA

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q9ZVJ2	AMERL_ARATH	No assigned EC number	0.7729	0.9764	0.9672	yes	no
Q22004	AMERL_CAEEL	No assigned EC number	0.4696	0.9009	0.955	yes	no
Q9P6M2	YKQ3_SCHPO	No assigned EC number	0.3968	0.8490	0.9326	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	estExt_Genewise1_v1.C_LG_X3386	SubName- Full=Putative uncharacterized protein; (213 aa)
		(Populus trichocarpa)
Predicted Functional Partners:
	grail3.0013043201	hypothetical protein (291 aa)	•		•	•					0.682
	estExt_fgenesh4_pg.C_LG_XVIII0441	SubName- Full=Putative uncharacterized protein; (291 aa)	•		•	•					0.678

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	212
pfam01871	172	pfam01871, AMMECR1, AMMECR1	3e-59
COG2078	203	COG2078, AMMECR1, Uncharacterized conserved protei	5e-33
TIGR00296	200	TIGR00296, TIGR00296, uncharacterized protein, PH0	5e-29
TIGR04335	175	TIGR04335, AmmeMemoSam_A, AmmeMemoRadiSam system p	1e-23
PRK00801	201	PRK00801, PRK00801, hypothetical protein; Provisio	3e-10
PRK03881	467	PRK03881, PRK03881, hypothetical protein; Provisio	3e-10

>gnl|CDD|216752 pfam01871, AMMECR1, AMMECR1

 Score =  183 bits (467), Expect = 3e-59
 Identities = 62/184 (33%), Positives = 88/184 (47%), Gaps = 22/184 (11%)

Query: 8   MAVYCFDTLVAHYNSE------DAPPPAFDEGQHPLFVTWKKVVNGGEPRLRGCIGTLEA 61
           +     + + A+             PP  +E +  +FVT KK        LRGCIGT E 
Sbjct: 1   LVRLAREAIEAYLEGGKVLEPPPELPPKLNE-KRGVFVTLKK-----RGELRGCIGTFEP 54

Query: 62  -RCLINGFKDYALTSALKDRRFPPIQARELPSLECTVSILTDFETANNYLD-WEVGTHGL 119
            R L     + A+ +A +D RFPP+   ELP L   VS+L+  E  +  L+  EVG HGL
Sbjct: 55  VRPLAEAVIEAAIAAAFEDPRFPPVTEEELPDLTIEVSVLSPPEPIDVDLEDLEVGRHGL 114

Query: 120 IIEFTDPEYSTRRSATYLPEVAAHEGWTKVEAIDSLMRKAGFSGPITESLRKRIRLTRYQ 179
           IIEF         S   LP+VA  +GW   E +  L RKAG   P    L + + + R++
Sbjct: 115 IIEF------GGYSGLLLPQVAVEQGWDPEEFLAHLCRKAGL--PPDAWLDEDVEIYRFE 166

Query: 180 STLF 183
           + +F
Sbjct: 167 AQIF 170

This family consists of several AMMECR1 as well as several uncharacterized proteins. The contiguous gene deletion syndrome AMME is characterized by Alport syndrome, midface hypoplasia, mental retardation and elliptocytosis and is caused by a deletion in Xq22.3, comprising several genes including COL4A5, FACL4 and AMMECR1. This family contains sequences from several eukaryotic species as well as archaebacteria and it has been suggested that the AMMECR1 protein may have a basic cellular function, potentially in either the transcription, replication, repair or translation machinery. Length = 172

>gnl|CDD|224989 COG2078, AMMECR1, Uncharacterized conserved protein [Function unknown]

 Score =  117 bits (295), Expect = 5e-33
 Identities = 55/184 (29%), Positives = 79/184 (42%), Gaps = 22/184 (11%)

Query: 11  YCFDTLVAHYN-----SEDAPPPAFDEGQHPLFVTWKKVVNGGEPRLRGCIGTLEARC-L 64
              + +  +         +  P  F E +  +FVT +K    GE  LRGCIGT E    L
Sbjct: 16  LAREAIENYLEGGKVIEPEPFPKLFQE-KRGVFVTLEKYSPDGE--LRGCIGTPEPVKPL 72

Query: 65  INGFKDYALTSALKDRRFPPIQARELPSLECTVSILTDFET----ANNYL-DWEVGTHGL 119
                  A+ +AL D RFPP+   EL  +   V+ILT  E           D EVG HGL
Sbjct: 73  AEAIIKAAIEAALSDPRFPPVSLEELDDIVVEVTILTPPEEIDVPPEERPEDIEVGRHGL 132

Query: 120 IIEFTDPEYSTRRSATYLPEVAAHEGWTKVEAIDSLMRKAGFSGPITESLRKRIRLTRYQ 179
           I+E          S   LP+V     W   E ++    KAG  G     L + +++ R++
Sbjct: 133 IVEK------GIYSGLLLPQVPVEYRWDVEEFLEHTCEKAGLPGDC--WLDEDVKIYRFE 184

Query: 180 STLF 183
           + +F
Sbjct: 185 AQIF 188

Length = 203

>gnl|CDD|232909 TIGR00296, TIGR00296, uncharacterized protein, PH0010 family

 Score =  106 bits (267), Expect = 5e-29
 Identities = 56/154 (36%), Positives = 79/154 (51%), Gaps = 18/154 (11%)

Query: 37  LFVTWKKVVNGGEPRLRGCIGTLE-ARCLINGFKDYALTSALKDRRFPPIQARELPSLEC 95
           +F+T KK    G   LRGCIGT E    LI   ++ A+++A +D RFPP+Q  EL  ++ 
Sbjct: 46  VFITLKK---KGNKHLRGCIGTPEPVMPLIEAIEEAAISAATEDPRFPPVQLEELDDIKV 102

Query: 96  TVSILTDFET-----ANNYL-DWEVGTHGLIIEFTDPEYSTRRSATYLPEVAAHEGWTKV 149
            VSILT  ET       +Y  D E+G HGLI+EF        +    LP+VA   GW   
Sbjct: 103 EVSILTPPETIFVGGPKDYPFDIEIGRHGLIVEFGP------KRGLLLPQVAVEYGWDAE 156

Query: 150 EAIDSLMRKAGFSGPITESLRKRIRLTRYQSTLF 183
           E + +L  KAG       +    I + R++  +F
Sbjct: 157 EFLANLCMKAGLPPDCFLT--YGIEVYRFEGQIF 188

Members of this functionally uncharacterized protein family have been crystallized from Pyrococcus Horikoshii, Methanosarcina Mazei, and Sulfolobus Tokodaii [Unknown function, General]. Length = 200

>gnl|CDD|234550 TIGR04335, AmmeMemoSam_A, AmmeMemoRadiSam system protein A

 Score = 91.9 bits (229), Expect = 1e-23
 Identities = 50/172 (29%), Positives = 70/172 (40%), Gaps = 29/172 (16%)

Query: 26  PPPAFDEGQHPL-------FVTWKKVVNGGEPRLRGCIGTLEA-RCLINGFKDYALTSAL 77
             P  +    P        FVT  K  NG    LRGCIGT+EA R L+    + A+ +A 
Sbjct: 19  RLPDIEPELPPKLNEKGGCFVTLHK--NG---ELRGCIGTIEADRPLVEDVAENAIAAAF 73

Query: 78  KDRRFPPIQARELPSLECTVSILT-----DFETANNYL-DWEVGTHGLIIEFTDPEYSTR 131
           KD RFPP+   EL  L   VS+L+       E     L +   G  GLI+E         
Sbjct: 74  KDPRFPPLTEDELDRLTIEVSVLSPPEPLPVEDEEELLEELRPGRDGLILE------DGG 127

Query: 132 RSATYLPEVAAHEGWTKVEAIDSLMRKAGFSGPITESLRKRIRLTRYQSTLF 183
           R   +LP+V           +  L  KAG      ++ +    + R+   +F
Sbjct: 128 RRGLFLPQVWEELP-DPETFLRHLCLKAGLPP---DAWKDPTTIYRFTVEVF 175

Members of this protein family belong to the same domain family as AMMECR1, a mammalian protein named for AMME - Alport syndrome, Mental Retardation, Midface hypoplasia, and Elliptocytosis. Members of the present family occur as part of a three gene system with a homolog of the mammalian protein Memo (Mediator of ErbB2-driven cell MOtility), and an uncharacterized radical SAM enzyme. Length = 175

>gnl|CDD|234839 PRK00801, PRK00801, hypothetical protein; Provisional

 Score = 57.0 bits (138), Expect = 3e-10
 Identities = 46/144 (31%), Positives = 65/144 (45%), Gaps = 22/144 (15%)

Query: 27  PPAFDEGQHPLFVTWKKVVNGGEPRLRGCIG-TLEARCLINGFKDYALTSALKDRRFPPI 85
           PP F E +  +FVT  K    G   LRGCIG       L+    D A+++A +D RFPP+
Sbjct: 37  PPVFWE-KRGVFVTLNK---HGV--LRGCIGFPYPDSPLVEAIIDSAISAATRDPRFPPV 90

Query: 86  QARELPSLECTVSILTDFETAN-------NYLDWEVGTHGLIIEFTDPEYSTRRSATYLP 138
           +  E+  +   V++LT  E            +  EVG HGLI++          S   LP
Sbjct: 91  KLEEMDEITVEVTVLTPPELIEGPPEELPEKI--EVGRHGLIVK------KGIYSGLLLP 142

Query: 139 EVAAHEGWTKVEAIDSLMRKAGFS 162
           +VA   G+   E +     KAG  
Sbjct: 143 QVAPEWGFDSEEFLSHTCLKAGLP 166

Length = 201

>gnl|CDD|235170 PRK03881, PRK03881, hypothetical protein; Provisional

 Score = 58.3 bits (142), Expect = 3e-10
 Identities = 43/141 (30%), Positives = 69/141 (48%), Gaps = 25/141 (17%)

Query: 27  PPAFDEGQHPLFVTWKKVVNGGEPRLRGCIGTLE------ARCLINGFKDYALTSALKDR 80
           P      +  +FV+ KK  +G    LRGCIGT+       A  +I      A+++  +D 
Sbjct: 327 PEEMLNRRAGVFVSLKK--DG---ELRGCIGTIFPTRENIAEEIIRN----AISAGTEDP 377

Query: 81  RFPPIQARELPSLECTVSILTDFETANNYLDWEVGTHGLIIEFTDPEYSTRRSATYLPEV 140
           RFPP++  EL  L  +V +LT+ E  ++  + +   +G+I+       S RR    LP++
Sbjct: 378 RFPPVEEDELDDLVYSVDVLTEPEPVSSLDELDPKRYGVIVR------SGRRRGLLLPDL 431

Query: 141 AAHEGWTKVE-AIDSLMRKAG 160
              EG   VE  +   +RKAG
Sbjct: 432 ---EGVDTVEEQLSIALRKAG 449

Length = 467

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	212
KOG3274	210	consensus Uncharacterized conserved protein, AMMEC	100.0
PF01871	171	AMMECR1: AMMECR1; InterPro: IPR002733 The contiguo	100.0
TIGR00296	200	uncharacterized protein, PH0010 family. Members of	100.0
PRK00801	201	hypothetical protein; Provisional	100.0
COG2078	203	AMMECR1 Uncharacterized conserved protein [Functio	100.0
PRK03881	467	hypothetical protein; Provisional	100.0

>KOG3274 consensus Uncharacterized conserved protein, AMMECR1 [Function unknown]

Probab=100.00  E-value=1.3e-62  Score=410.94  Aligned_cols=195  Identities=62%  Similarity=1.089  Sum_probs=184.6

Q ss_pred             CCccchHHHHHHHHHHHHhhcCCCCC--CCCCCCCCCceEEEEEEeccCCCCcceeeecccCcccHHHHHHHHHHHhhhc
Q 028185            1 MVSANREMAVYCFDTLVAHYNSEDAP--PPAFDEGQHPLFVTWKKVVNGGEPRLRGCIGTLEARCLINGFKDYALTSALK   78 (212)
Q Consensus         1 ~~~~~~~~~~~Ar~aI~~~L~~~~~~--~~~~~~~~~g~FVTl~~~~~~~~~~LRGCIGt~~p~pL~~~i~~~A~~AA~~   78 (212)
                      |.+++.+||.|||++|.++|++.+.|  ++.+.+...++||||++   |.+.+||||||||+++||+.++.+||+.|||+
T Consensus        10 ~~~~~~~ma~ycF~vl~~~ln~~k~p~~~~~~~~~~~PLFvtwk~---g~dkrLRGCIGTFsam~L~~Gl~eYaltsAl~   86 (210)
T KOG3274|consen   10 MTSANSEMAVYCFDVLYAHLNNEKSPSLPPDFRNRLYPLFVTWKK---GHDKRLRGCIGTFSAMPLHSGLREYALTSALK   86 (210)
T ss_pred             ccccCcceEEEehhhhhhhhccccCCCcchhhhccCcceeEEecc---CCCcccccceeehhhcchhhhHHHHHHHHHhh
Confidence            67799999999999999999998887  56677999999999996   34478999999999999999999999999999


Q ss_pred             CCCCCCCCcCCCCCeeEEEEeccCccccCCccCCcccceeEEEEEeCCCCCCCceeeecCchhhccCCCHHHHHHHHHHH
Q 028185           79 DRRFPPIQARELPSLECTVSILTDFETANNYLDWEVGTHGLIIEFTDPEYSTRRSATYLPEVAAHEGWTKVEAIDSLMRK  158 (212)
Q Consensus        79 DpRF~Pl~~~EL~~l~ieVSvL~~~e~~~d~~d~~~G~hGlii~~~~~~~~~~~~~t~LP~Va~E~~w~~~~~l~~l~~K  158 (212)
                      |.||+||+.+||++|.|+||+|++||++.|++||++|+|||.|+|.+ ..|..++|||||+||.|||||++|++++|++|
T Consensus        87 DsRF~PIsr~ELp~L~CsvslL~nFE~i~d~lDWevG~HGIrieF~~-e~g~krsATyLPeVa~EQgWd~~eTidsLirK  165 (210)
T KOG3274|consen   87 DSRFPPISREELPSLQCSVSLLTNFEDIFDYLDWEVGVHGIRIEFTN-ETGTKRSATYLPEVAAEQGWDQIETIDSLIRK  165 (210)
T ss_pred             cccCCCCChhhcCceEEEEEeeccchhcccccceeeccceEEEEEEc-CCCcEeeeeecccchhhcCCcHHHHHHHHHHh
Confidence            99999999999999999999999999999999999999999999988 34789999999999999999999999999999


Q ss_pred             cCCCCCCcccccCcEEEEEEEEEEEEeeHHHHHHHHHhhcC
Q 028185          159 AGFSGPITESLRKRIRLTRYQSTLFALHYSDYASYVKTTRG  199 (212)
Q Consensus       159 AG~~~~~~~~~~~~i~v~ry~~~~~~~~~~~y~~~~~~~~~  199 (212)
                      |||.+.|++.+++.|+++||++++++++|+||++.++++..
T Consensus       166 aGY~g~It~~~r~~I~ltRY~S~k~~~~Y~EY~~~~q~~~~  206 (210)
T KOG3274|consen  166 AGYKGPITEELRKSIKLTRYRSEKISITYEEYLAYLQHHGA  206 (210)
T ss_pred             cCCCCccCHHHHhheeeeEeeceeeeeeHHHHHHHHHhhcC
Confidence            99999999999999999999999999999999999999754

>PF01871 AMMECR1: AMMECR1; InterPro: IPR002733 The contiguous gene deletion syndrome is characterised by Alport syndrome (A), mental retardation (M), midface hypoplasia (M), and elliptocytosis (E), as well as generalized hypoplasia and cardiac abnormalities

Probab=100.00  E-value=6.2e-60  Score=393.51  Aligned_cols=164  Identities=37%  Similarity=0.636  Sum_probs=134.4

Q ss_pred             HHHHHHHHHHHhhcCCCCC--CCC---CCCCCCceEEEEEEeccCCCCcceeeecccCc-ccHHHHHHHHHHHhhhcCCC
Q 028185            8 MAVYCFDTLVAHYNSEDAP--PPA---FDEGQHPLFVTWKKVVNGGEPRLRGCIGTLEA-RCLINGFKDYALTSALKDRR   81 (212)
Q Consensus         8 ~~~~Ar~aI~~~L~~~~~~--~~~---~~~~~~g~FVTl~~~~~~~~~~LRGCIGt~~p-~pL~~~i~~~A~~AA~~DpR   81 (212)
                      ||.+||++|.++|++++..  ++.   ...+++||||||++    + |+|||||||++| +||.++|++||++|||+|||
T Consensus         1 Ll~~Ar~ai~~~l~~~~~~~~~~~~~~~l~~~~g~FVTl~~----~-g~LRGCIGt~~p~~~L~~~v~~~A~~AA~~DpR   75 (171)
T PF01871_consen    1 LLRLAREAIESYLRGGPLPPPPPPLPPELSEPRGVFVTLKK----D-GELRGCIGTFEPVRPLAEDVIENAIAAAFEDPR   75 (171)
T ss_dssp             HHHHHHHHHHHHHHHSSSCCCCCT--GGGGSBEEEEEEEEE----C-CCEEEEEEESSSESBHHHHHHHHHHHHHHT-TT
T ss_pred             CHHHHHHHHHHHHcCCCCCCCCCCCChhhcCceeEEEEEEE----C-CEEEEEeccCCcchhHHHHHHHHHHHHhhCCCC
Confidence            7999999999999988742  111   12679999999999    6 999999999999 99999999999999999999


Q ss_pred             CCCCCcCCCCCeeEEEEeccCccccCCccCCcccceeEEEEEeCCCCCCCceeeecCchhhccCCCHHHHHHHHHHHcCC
Q 028185           82 FPPIQARELPSLECTVSILTDFETANNYLDWEVGTHGLIIEFTDPEYSTRRSATYLPEVAAHEGWTKVEAIDSLMRKAGF  161 (212)
Q Consensus        82 F~Pl~~~EL~~l~ieVSvL~~~e~~~d~~d~~~G~hGlii~~~~~~~~~~~~~t~LP~Va~E~~w~~~~~l~~l~~KAG~  161 (212)
                      |+||+++||++|.|+||||++|+++.++.+|+||+|||+|++      ++++||||||||.||+||+++||++||+|||+
T Consensus        76 F~Pl~~~El~~l~ieVSvL~~~~~i~~~~~~~~g~~Glil~~------~~~~~~~LPqVa~E~~w~~~~fl~~l~~KAG~  149 (171)
T PF01871_consen   76 FPPLTPSELPELSIEVSVLSPPEPISDPEDWEPGRHGLILEF------GGYRGTFLPQVAWEQGWDPEEFLRHLCRKAGL  149 (171)
T ss_dssp             S----GGGGGGEEEEEEEE---EE--GGGG--TTT-EEEEEE------TTEEEEE-THHHHHTT--HHHHHHHHHHHTTS
T ss_pred             CCCCCHHHHcccEEEEEeccCcEEcCCHHHcccCcceeEEEe------cCcceEECCCchhhcCCCHHHHHHHHHHHCCC
Confidence            999999999999999999999999999999999999999999      89999999999999999999999999999999


Q ss_pred             CCCCcccc-cCcEEEEEEEEEEEEe
Q 028185          162 SGPITESL-RKRIRLTRYQSTLFAL  185 (212)
Q Consensus       162 ~~~~~~~~-~~~i~v~ry~~~~~~~  185 (212)
                      +.   +.| .++++++||++++|+|
T Consensus       150 ~~---~~w~~~~~~~~rf~~~~f~E  171 (171)
T PF01871_consen  150 PP---DAWKSPDIKLYRFQAEVFSE  171 (171)
T ss_dssp             -T---TCCCTTTSEEEEE-EEEEEE
T ss_pred             Cc---cccccCCeEEEEEEEEEEeC
Confidence            97   344 6799999999999986

It is caused by a deletion in Xq22.3, comprising several genes including AMME chromosomal region gene 1 (AMMECR1), which encodes a protein with a nuclear location and presently unknown function. The C-terminal region of AMMECR1 (from residue 122 to 333) is well conserved, and homologues appear in species ranging from bacteria and archaea to eukaryotes. The high level of conservation of the AMMECR1 domain points to a basic cellular function, potentially in either the transcription, replication, repair or translation machinery [, ]. The AMMECR1 domain contains a 6-amino-acid motif (LRGCIG) that might be functionally important since it is strikingly conserved throughout evolution []. The AMMECR1 domain consists of two distinct subdomains of different sizes. The large subdomain, which contains both the N- and C-terminal regions, consists of five alpha-helices and five beta-strands. These five beta-strands form an antiparallel beta-sheet. The small subdomain consists of four alpha-helices and three beta-strands, and these beta-strands also form an antiparallel beta-sheet. The conserved 'LRGCIG' motif is located at beta(2) and its N-terminal loop, and most of the side chains of these residues point toward the interface of the two subdomains. The two subdomains are connected by only two loops, and the interaction between the two subdomains is not strong. Thus, these subdomains may move dynamically when the substrate enters the cleft. The size of the cleft suggests that the substrate is large, e.g., the substrate may be a nucleic acid or protein. However, the inner side of the cleft is not filled with positively charged residues, and therefore it is unlikely that negatively charged nucleic acids such as DNA or RNA interact at this site []. ; PDB: 1WSC_B 1VAJ_A 1ZQ7_D.

>TIGR00296 uncharacterized protein, PH0010 family

Probab=100.00  E-value=6.7e-58  Score=389.69  Aligned_cols=170  Identities=34%  Similarity=0.564  Sum_probs=153.6

Q ss_pred             chHHHHHHHHHHHHhhcCCCCC--CCCCC---CCCCceEEEEEEeccCCCCc--ceeeecccCc-ccHHHHHHHHHHHhh
Q 028185            5 NREMAVYCFDTLVAHYNSEDAP--PPAFD---EGQHPLFVTWKKVVNGGEPR--LRGCIGTLEA-RCLINGFKDYALTSA   76 (212)
Q Consensus         5 ~~~~~~~Ar~aI~~~L~~~~~~--~~~~~---~~~~g~FVTl~~~~~~~~~~--LRGCIGt~~p-~pL~~~i~~~A~~AA   76 (212)
                      .+.||.+||++|.++|++++.+  +++++   ++++||||||++    + |+  |||||||+.| +||+++|++||++||
T Consensus         9 ~~~l~~lAr~ai~~~l~~~~~~~~~~~~p~~l~~~~g~FVTl~~----~-~~~~LRGCIGs~~p~~pL~~~v~~~A~~AA   83 (200)
T TIGR00296         9 GSSAVRYARYAIESHLNGGKSSRLYPDLPIVFNEKRGVFITLKK----K-GNKHLRGCIGTPEPVMPLIEAIEEAAISAA   83 (200)
T ss_pred             HHHHHHHHHHHHHHHHccCCCCCCCccCChhhCCcccEEEEEEE----C-CCcCCCcccccCCCcccHHHHHHHHHHHHH
Confidence            4569999999999999876632  33454   789999999998    3 56  9999999999 999999999999999


Q ss_pred             hcCCCCCCCCcCCCCCeeEEEEeccCcccc------CCccCCcccceeEEEEEeCCCCCCCceeeecCchhhccCCCHHH
Q 028185           77 LKDRRFPPIQARELPSLECTVSILTDFETA------NNYLDWEVGTHGLIIEFTDPEYSTRRSATYLPEVAAHEGWTKVE  150 (212)
Q Consensus        77 ~~DpRF~Pl~~~EL~~l~ieVSvL~~~e~~------~d~~d~~~G~hGlii~~~~~~~~~~~~~t~LP~Va~E~~w~~~~  150 (212)
                      |+||||+||+++||++|.|+||||++++++      +++.+|+||+|||+|++      +.++||||||||.||+||+++
T Consensus        84 ~~DpRF~Pl~~~EL~~l~ieVSvL~~~e~i~~~~~~~~~~~~~~G~hGlii~~------g~~~gt~LPqVa~E~~wd~~~  157 (200)
T TIGR00296        84 TEDPRFPPVQLEELDDIKVEVSILTPPETIFVGGPKDYPFDIEIGRHGLIVEF------GPKRGLLLPQVAVEYGWDAEE  157 (200)
T ss_pred             cCCCCCCCCChHHhCCcEEEEEeCCCCEEcccCCccccHHHcccccceEEEEE------CCccEEECCccHhhcCCCHHH
Confidence            999999999999999999999999999998      35678999999999999      789999999999999999999


Q ss_pred             HHHHHHHHcCCCCCCcccccC-cEEEEEEEEEEEEeeHH
Q 028185          151 AIDSLMRKAGFSGPITESLRK-RIRLTRYQSTLFALHYS  188 (212)
Q Consensus       151 ~l~~l~~KAG~~~~~~~~~~~-~i~v~ry~~~~~~~~~~  188 (212)
                      ||.+||+||||++   +.|.+ +++|+||++++|++...
T Consensus       158 fl~~l~~KAGl~~---d~w~~~~~~v~rf~~~~f~E~~~  193 (200)
T TIGR00296       158 FLANLCMKAGLPP---DCFLTYGIEVYRFEGQIFEEFEP  193 (200)
T ss_pred             HHHHHHHhCCCCc---cccccCCcEEEEEEEEEEEecCC
Confidence            9999999999998   45554 79999999999997643

Members of this functionally uncharacterized protein family have been crystallized from Pyrococcus Horikoshii, Methanosarcina Mazei, and Sulfolobus Tokodaii.

>PRK00801 hypothetical protein; Provisional

Probab=100.00  E-value=2.8e-57  Score=386.09  Aligned_cols=168  Identities=26%  Similarity=0.356  Sum_probs=154.2

Q ss_pred             hHHHHHHHHHHHHhhcCCCCCC--CCCC---CCCCceEEEEEEeccCCCCcceeeecccCc-ccHHHHHHHHHHHhhhcC
Q 028185            6 REMAVYCFDTLVAHYNSEDAPP--PAFD---EGQHPLFVTWKKVVNGGEPRLRGCIGTLEA-RCLINGFKDYALTSALKD   79 (212)
Q Consensus         6 ~~~~~~Ar~aI~~~L~~~~~~~--~~~~---~~~~g~FVTl~~~~~~~~~~LRGCIGt~~p-~pL~~~i~~~A~~AA~~D   79 (212)
                      +.|+.+||++|.++|.+++.++  ..++   .+++||||||++    + |+|||||||+.| +||+++|++||++|||+|
T Consensus        10 ~~Ll~lAR~ai~~~l~~~~~~~~~~~~~~~l~~~~g~FVTl~~----~-g~LRGCIGs~~p~~pL~~~v~~~A~~AA~~D   84 (201)
T PRK00801         10 EFAVRLARRAIEEYLRTGKVIEPPKDLPPVFWEKRGVFVTLNK----H-GVLRGCIGFPYPDSPLVEAIIDSAISAATRD   84 (201)
T ss_pred             HHHHHHHHHHHHHHHccCCCCCCCccCCHhHcccccEEEEEEE----C-CeeccccCCCCCcccHHHHHHHHHHHHHcCC
Confidence            5699999999999998766542  2333   679999999998    5 899999999999 999999999999999999


Q ss_pred             CCCCCCCcCCCCCeeEEEEeccCccccCC-----ccCCcccceeEEEEEeCCCCCCCceeeecCchhhccCCCHHHHHHH
Q 028185           80 RRFPPIQARELPSLECTVSILTDFETANN-----YLDWEVGTHGLIIEFTDPEYSTRRSATYLPEVAAHEGWTKVEAIDS  154 (212)
Q Consensus        80 pRF~Pl~~~EL~~l~ieVSvL~~~e~~~d-----~~d~~~G~hGlii~~~~~~~~~~~~~t~LP~Va~E~~w~~~~~l~~  154 (212)
                      |||+||+++||++|.|+||||++++++++     +.+|+||+|||+|++      +.++||||||||.||+|++++||.+
T Consensus        85 pRF~Pl~~~EL~~l~ieVSvLs~~e~i~~~~~~l~~~~~~G~~Glii~~------g~~~g~~LPqV~~e~~wd~~efl~~  158 (201)
T PRK00801         85 PRFPPVKLEEMDEITVEVTVLTPPELIEGPPEELPEKIEVGRHGLIVKK------GIYSGLLLPQVAPEWGFDSEEFLSH  158 (201)
T ss_pred             CCCCCCChHHhCCcEEEEEEcCCCEEccCcchhhHHhccccceEEEEEe------CCccEEECCcchhhcCCCHHHHHHH
Confidence            99999999999999999999999999975     678999999999999      8899999999999999999999999


Q ss_pred             HHHHcCCCCCCcccccCcEEEEEEEEEEEEeeH
Q 028185          155 LMRKAGFSGPITESLRKRIRLTRYQSTLFALHY  187 (212)
Q Consensus       155 l~~KAG~~~~~~~~~~~~i~v~ry~~~~~~~~~  187 (212)
                      ||+||||+.   +.|.++++++||++++|++.-
T Consensus       159 l~~KAGl~~---d~w~~~~~v~rf~~~~f~E~~  188 (201)
T PRK00801        159 TCLKAGLPP---DCWLDDAEVYRFEGQIFKEEE  188 (201)
T ss_pred             HHHhcCCCc---cccccCcEEEEEEEEEEEccC
Confidence            999999997   566679999999999999864

>COG2078 AMMECR1 Uncharacterized conserved protein [Function unknown]

Probab=100.00  E-value=5.1e-54  Score=363.67  Aligned_cols=174  Identities=30%  Similarity=0.466  Sum_probs=158.2

Q ss_pred             hHHHHHHHHHHHHhhcCCCCCCCC-CC---CCCCceEEEEEEeccCCCCcceeeecccCc-ccHHHHHHHHHHHhhhcCC
Q 028185            6 REMAVYCFDTLVAHYNSEDAPPPA-FD---EGQHPLFVTWKKVVNGGEPRLRGCIGTLEA-RCLINGFKDYALTSALKDR   80 (212)
Q Consensus         6 ~~~~~~Ar~aI~~~L~~~~~~~~~-~~---~~~~g~FVTl~~~~~~~~~~LRGCIGt~~p-~pL~~~i~~~A~~AA~~Dp   80 (212)
                      ..+|.|||.+|.++|++++.+.+. ++   +++.|+||||++.+ ++ ++||||||++.| .+|.++|+++|+.||++||
T Consensus        11 ~~~V~lAR~ai~~~L~~gk~~~~~~~~~~~~~k~gvFvTl~~~~-~~-~~LRGCIG~~~p~~~l~~ai~~~Ai~AA~~DP   88 (203)
T COG2078          11 HPLVRLAREAIENYLEGGKVIEPEPFPKLFQEKRGVFVTLEKYS-PD-GELRGCIGTPEPVKPLAEAIIKAAIEAALSDP   88 (203)
T ss_pred             hHHHHHHHHHHHHHhccCCcCCCcccchhhhhccceEEEEEEeC-CC-CceeeecccCcccCcHHHHHHHHHHHHHhcCC
Confidence            579999999999999998876333 22   78999999999965 23 799999999999 8999999999999999999


Q ss_pred             CCCCCCcCCCCCeeEEEEeccCccccCCc-----cCCcccceeEEEEEeCCCCCCCceeeecCchhhccCCCHHHHHHHH
Q 028185           81 RFPPIQARELPSLECTVSILTDFETANNY-----LDWEVGTHGLIIEFTDPEYSTRRSATYLPEVAAHEGWTKVEAIDSL  155 (212)
Q Consensus        81 RF~Pl~~~EL~~l~ieVSvL~~~e~~~d~-----~d~~~G~hGlii~~~~~~~~~~~~~t~LP~Va~E~~w~~~~~l~~l  155 (212)
                      ||+||+++||+++.||||+|++|+++.+.     .+|++|+|||||.+      |.++|+|||||++|++||+++||+++
T Consensus        89 RF~pv~~~EL~~i~veV~iLt~pe~i~~~p~~~p~~ie~G~~Gliv~~------g~~sgllLPqV~vE~~w~~eefL~~~  162 (203)
T COG2078          89 RFPPVSLEELDDIVVEVTILTPPEEIDVPPEERPEDIEVGRHGLIVEK------GIYSGLLLPQVPVEYRWDVEEFLEHT  162 (203)
T ss_pred             CCCCCChhHhcceEEEEEEcCCCeecCCCchhChhheeecceEEEEec------CCcceeecCccccccCCCHHHHHHHH
Confidence            99999999999999999999999998754     78999999999999      88999999999999999999999999


Q ss_pred             HHHcCCCCCCcccccCcEEEEEEEEEEEEeeHHH
Q 028185          156 MRKAGFSGPITESLRKRIRLTRYQSTLFALHYSD  189 (212)
Q Consensus       156 ~~KAG~~~~~~~~~~~~i~v~ry~~~~~~~~~~~  189 (212)
                      |.||||+++  +|..+++++++|++++|+++..+
T Consensus       163 c~KAGlp~~--~w~~~~~~iy~F~~~If~E~~p~  194 (203)
T COG2078         163 CEKAGLPGD--CWLDEDVKIYRFEAQIFKEKEPE  194 (203)
T ss_pred             HHHcCCCcc--cccccCceEEEEEEEEEEecCCC
Confidence            999999985  34566999999999999997643

>PRK03881 hypothetical protein; Provisional

Probab=100.00  E-value=1.4e-46  Score=353.83  Aligned_cols=161  Identities=25%  Similarity=0.398  Sum_probs=144.2

Q ss_pred             chHHHHHHHHHHHHhhcCCCCC--CCC----CCCCCCceEEEEEEeccCCCCcceeeecccCc-c-cHHHHHHHHHHHhh
Q 028185            5 NREMAVYCFDTLVAHYNSEDAP--PPA----FDEGQHPLFVTWKKVVNGGEPRLRGCIGTLEA-R-CLINGFKDYALTSA   76 (212)
Q Consensus         5 ~~~~~~~Ar~aI~~~L~~~~~~--~~~----~~~~~~g~FVTl~~~~~~~~~~LRGCIGt~~p-~-pL~~~i~~~A~~AA   76 (212)
                      .+.++++||++|.++|++++.+  +++    +.+.++||||||++    + |+|||||||++| . ||.++|++||++||
T Consensus       299 ~~~l~~lAr~~i~~~l~~~~~~~~~~~~~~~~~~~~~g~FVTl~~----~-g~LRGCIG~~~p~~~~L~~~v~~~a~~AA  373 (467)
T PRK03881        299 EDPYVRLARESLESYVKTGKPLPVPDYLPEEMLNRRAGVFVSLKK----D-GELRGCIGTIFPTRENIAEEIIRNAISAG  373 (467)
T ss_pred             hhHHHHHHHHHHHHHhCcCCCCCCCccCChHHhCCcccEEEEEEE----C-CeeeeeeeecCCCcchHHHHHHHHHHHHh
Confidence            5679999999999999876543  222    23689999999998    5 899999999999 4 89999999999999


Q ss_pred             hcCCCCCCCCcCCCCCeeEEEEeccCccccCCccCCcccceeEEEEEeCCCCCCCceeeecCchhhccCCCHHHHHHHHH
Q 028185           77 LKDRRFPPIQARELPSLECTVSILTDFETANNYLDWEVGTHGLIIEFTDPEYSTRRSATYLPEVAAHEGWTKVEAIDSLM  156 (212)
Q Consensus        77 ~~DpRF~Pl~~~EL~~l~ieVSvL~~~e~~~d~~d~~~G~hGlii~~~~~~~~~~~~~t~LP~Va~E~~w~~~~~l~~l~  156 (212)
                      |+||||+||+++||++|.||||||+++|+++++.+|+||+|||+|++      +.++|||||||  ++-+++++||+++|
T Consensus       374 ~~DpRF~pl~~~El~~l~i~VsvL~~~~~~~~~~~~~~g~~Gli~~~------~~~~g~~LP~v--~~~~~~~~fl~~~~  445 (467)
T PRK03881        374 TEDPRFPPVEEDELDDLVYSVDVLTEPEPVSSLDELDPKRYGVIVRS------GRRRGLLLPDL--EGVDTVEEQLSIAL  445 (467)
T ss_pred             cCCCCCCCCChHHhCCeEEEEEEcCCCeECCCHHHcCCccceEEEEE------CCccEEECCCC--CCCCCHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999      78999999999  43335699999999


Q ss_pred             HHcCCCCCCcccccCcEEEEEEEEEEEE
Q 028185          157 RKAGFSGPITESLRKRIRLTRYQSTLFA  184 (212)
Q Consensus       157 ~KAG~~~~~~~~~~~~i~v~ry~~~~~~  184 (212)
                      +|||++++      ++++++||++++|.
T Consensus       446 ~KaGl~~~------~~~~~~~f~~~~~~  467 (467)
T PRK03881        446 RKAGIDPD------EDVEIERFEVVRHK  467 (467)
T ss_pred             HhcCCCCC------CCeEEEEEEEEEeC
Confidence            99999984      24999999999873

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	212
1wsc_A	230	Crystal Structure Of St0229, Function Unknown Prote		9e-08
1vaj_A	214	Crystal Structure Of Uncharacterized Protein Ph0010		1e-06
1zq7_A	207	X-Ray Crystal Structure Of Protein Q8pzk8 From Meth		9e-06

>pdb|1WSC|A Chain A, Crystal Structure Of St0229, Function Unknown Protein From Sulfolobus Tokodaii Length = 230

Iteration: 1
 Score = 53.5 bits (127), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 41/144 (28%), Positives = 62/144 (43%), Gaps = 14/144 (9%)
Query: 47  GGEPRLRGCIGTLEARC-LINGFKDYALTSALKDRRFPPIQARELPSLECTVSILTDFET 105
           G    LRGCIG +EA   L       A+ +A  D RFPP+   E  ++   V++LT  + 
Sbjct: 66  GNSTSLRGCIGYVEAVAPLKEIVSKAAIAAAFSDPRFPPLSKGEFDNIIIEVTVLTKPQE 125
Query: 106 ANNYLDWE------VGTHGLIIEFTDPEYSTRRSATYLPEVAAHEGWTKVEAIDSLMRKA 159
            +    WE      VG  GLI+     EY    S   LP+V     W +   +     KA
Sbjct: 126 IDVENRWELPKKIKVGEDGLIV-----EYGILYSGLLLPQVPXEYCWDEETFLAETCIKA 180
Query: 160 GFSGPITESLRKRIRLTRYQSTLF 183
           G        L  ++++ ++Q  +F
Sbjct: 181 GLEPDCW--LNNKVKIKKFQGIIF 202

>pdb|1VAJ|A Chain A, Crystal Structure Of Uncharacterized Protein Ph0010 From Pyrococcus Horikoshii Length = 214

Iteration: 1
 Score = 49.3 bits (116), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 48/171 (28%), Positives = 75/171 (43%), Gaps = 16/171 (9%)
Query: 23  EDAPPPAFDEGQHPLFVTWKKVVNGGEPRLRGCIG-TLEARCLINGFKDYALTSALKDRR 81
           +D PP  +++    +FVT  +     +  LRGCIG       L+      A+ SA+ D R
Sbjct: 35  KDTPPELWEKXG--VFVTLNRYNVPPQTALRGCIGFPTPIYPLVEATIKAAIYSAVDDPR 92
Query: 82  FPPIQARELPSLECTVSILTDFETANNYLD-----WEVGTHGLIIEFTDPEYSTRRSATY 136
           FPP++  E  +L   VS+LT  E      +      +VG  GLI+E          S   
Sbjct: 93  FPPVKLEEXDNLVVEVSVLTPPELIEGPPEERPRKIKVGRDGLIVE------KGIYSGLL 146
Query: 137 LPEVAAHEGWTKVEAIDSLMRKAGFSGPITESLRKRIRLTRYQSTLFALHY 187
           LP+V    GW + E +     KAG   P    L +  ++ ++ + +F   Y
Sbjct: 147 LPQVPVEWGWDEEEFLAETCWKAGL--PPDCWLDEDTKVYKFTAEIFEEEY 195

>pdb|1ZQ7|A Chain A, X-Ray Crystal Structure Of Protein Q8pzk8 From Methanosarcina Mazei. Northeast Structural Genomics Consortium Target Mar9. Length = 207

Iteration: 1
 Score = 46.6 bits (109), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 43/141 (30%), Positives = 63/141 (44%), Gaps = 18/141 (12%)
Query: 28  PAFDEGQHPLFVTWKKVVNGGEPRLRGCIG-TLEARCLINGFKDYALTSALKDRRFPPIQ 86
           P F+E +  +FVT   +  GG   LRGCIG       L     D A+++A +D RFP ++
Sbjct: 39  PVFEEYRG-VFVT---LTEGG--LLRGCIGHPYPDSTLKEAILDSAISAATRDPRFPTVE 92
Query: 87  ARELPSLECTVSILTDFETANNYL-----DWEVGTHGLIIEFTDPEYSTRRSATYLPEVA 141
             E  ++   V+ILT  E  N          E+G HGLI++              LP+VA
Sbjct: 93  QDEXKNILVEVTILTQPEKINASPKELPDKVEIGKHGLIVK------QGYCQGLLLPQVA 146
Query: 142 AHEGWTKVEAIDSLMRKAGFS 162
                  ++ +     KAG S
Sbjct: 147 PENDXDSIDFLSHTCXKAGLS 167

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	212
1vaj_A	214	Hypothetical protein PH0010; alpha + beta fold, st	9e-46
1wsc_A	230	Hypothetical protein ST0229; structural genomics,	4e-43
1zq7_A	207	Hypothetical protein MM0484; X-RAY, NESG, MAR9, Q8	5e-40

>1vaj_A Hypothetical protein PH0010; alpha + beta fold, structural genomics, unknown function; 1.82A {Pyrococcus horikoshii} SCOP: d.309.1.1 Length = 214

 Score =  150 bits (379), Expect = 9e-46
 Identities = 48/173 (27%), Positives = 72/173 (41%), Gaps = 15/173 (8%)

Query: 23  EDAPPPAFDEGQHPLFVTWKKVVNGGEPRLRGCIGTLEA-RCLINGFKDYALTSALKDRR 81
               PP   E +  +FVT  +     +  LRGCIG       L+      A+ SA+ D R
Sbjct: 34  PKDTPPELWE-KMGVFVTLNRYNVPPQTALRGCIGFPTPIYPLVEATIKAAIYSAVDDPR 92

Query: 82  FPPIQARELPSLECTVSILTDFE-----TANNYLDWEVGTHGLIIEFTDPEYSTRRSATY 136
           FPP++  E+ +L   VS+LT  E             +VG  GLI+E          S   
Sbjct: 93  FPPVKLEEMDNLVVEVSVLTPPELIEGPPEERPRKIKVGRDGLIVE------KGIYSGLL 146

Query: 137 LPEVAAHEGWTKVEAIDSLMRKAGFSGPITESLRKRIRLTRYQSTLFALHYSD 189
           LP+V    GW + E +     KAG   P    L +  ++ ++ + +F   Y  
Sbjct: 147 LPQVPVEWGWDEEEFLAETCWKAGL--PPDCWLDEDTKVYKFTAEIFEEEYPR 197

>1wsc_A Hypothetical protein ST0229; structural genomics, function unknown protein, unknown function; 2.45A {Sulfolobus tokodaii} SCOP: d.309.1.1 Length = 230

 Score =  143 bits (362), Expect = 4e-43
 Identities = 43/176 (24%), Positives = 69/176 (39%), Gaps = 16/176 (9%)

Query: 22  SEDAPPPAFDEGQHPLFVTWKKVVNGGEPRLRGCIGTLEA-RCLINGFKDYALTSALKDR 80
                 P  ++ +   FVT +         LRGCIG +EA   L       A+ +A  D 
Sbjct: 43  LSSLNDPILNK-KGLAFVTLETYYGNS-TSLRGCIGYVEAVAPLKEIVSKAAIAAAFSDP 100

Query: 81  RFPPIQARELPSLECTVSILTDFETANNYLDWE------VGTHGLIIEFTDPEYSTRRSA 134
           RFPP+   E  ++   V++LT  +  +    WE      VG  GLI+E+         S 
Sbjct: 101 RFPPLSKGEFDNIIIEVTVLTKPQEIDVENRWELPKKIKVGEDGLIVEYGI-----LYSG 155

Query: 135 TYLPEVAAHEGWTKVEAIDSLMRKAGFSGPITESLRKRIRLTRYQSTLFALHYSDY 190
             LP+V     W +   +     KAG        L  ++++ ++Q  +F       
Sbjct: 156 LLLPQVPMEYCWDEETFLAETCIKAGL--EPDCWLNNKVKIKKFQGIIFREEKPKS 209

>1zq7_A Hypothetical protein MM0484; X-RAY, NESG, MAR9, Q8PZK8, structural genomics, PSI, protein structure initiative; 2.11A {Methanosarcina mazei} SCOP: d.309.1.1 Length = 207

 Score =  135 bits (340), Expect = 5e-40
 Identities = 44/169 (26%), Positives = 70/169 (41%), Gaps = 21/169 (12%)

Query: 21  NSEDAPPPAFDEGQHPLFVTWKKVVNGGEPRLRGCIGTLEA-RCLINGFKDYALTSALKD 79
            S     P F+E    +FVT  +        LRGCIG       L     D A+++A +D
Sbjct: 32  ASGVELSPVFEE-YRGVFVTLTE-----GGLLRGCIGHPYPDSTLKEAILDSAISAATRD 85

Query: 80  RRFPPIQARELPSLECTVSILTDFETANNYLD-----WEVGTHGLIIEFTDPEYSTRRSA 134
            RFP ++  E+ ++   V+ILT  E  N          E+G HGLI++            
Sbjct: 86  PRFPTVEQDEMKNILVEVTILTQPEKINASPKELPDKVEIGKHGLIVKQ------GYCQG 139

Query: 135 TYLPEVAAHEGWTKVEAIDSLMRKAGFSGPITESLRKRIRLTRYQSTLF 183
             LP+VA       ++ +     KAG S    ++  K   +  ++  +F
Sbjct: 140 LLLPQVAPENDMDSIDFLSHTCMKAGLSP---DAWVKGAEVYCFEGQIF 185

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	212
1zq7_A	207	Hypothetical protein MM0484; X-RAY, NESG, MAR9, Q8	100.0
1vaj_A	214	Hypothetical protein PH0010; alpha + beta fold, st	100.0
1wsc_A	230	Hypothetical protein ST0229; structural genomics,	100.0

>1zq7_A Hypothetical protein MM0484; X-RAY, NESG, MAR9, Q8PZK8, structural genomics, PSI, protein structure initiative; 2.11A {Methanosarcina mazei} SCOP: d.309.1.1

Probab=100.00  E-value=3e-59  Score=398.42  Aligned_cols=168  Identities=27%  Similarity=0.415  Sum_probs=155.5

Q ss_pred             chHHHHHHHHHHHHhhcCCCCCCC-----CCC---CCCCceEEEEEEeccCCCCcceeeecccCc-ccHHHHHHHHHHHh
Q 028185            5 NREMAVYCFDTLVAHYNSEDAPPP-----AFD---EGQHPLFVTWKKVVNGGEPRLRGCIGTLEA-RCLINGFKDYALTS   75 (212)
Q Consensus         5 ~~~~~~~Ar~aI~~~L~~~~~~~~-----~~~---~~~~g~FVTl~~~~~~~~~~LRGCIGt~~p-~pL~~~i~~~A~~A   75 (212)
                      .+.||++||++|.++|++++.+.+     .++   ++++||||||++    + |+||||||||+| +||.++|++||++|
T Consensus         7 ~~~lv~lAR~aI~~~l~~~~~~~p~~~~~~~~~~l~~~~g~FVTl~~----~-g~LRGCIGt~~p~~~L~~~i~~~Ai~A   81 (207)
T 1zq7_A            7 GRAAVKLARKTIEIFLSKGKSPRPDASGVELSPVFEEYRGVFVTLTE----G-GLLRGCIGHPYPDSTLKEAILDSAISA   81 (207)
T ss_dssp             HHHHHHHHHHHHHHHHHHSCCCC---CCCCCCGGGGSBCCEEEEEEE----T-TEEEEEEEECSCCSBHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHccCCCCCccccccCCChhhcCcccEEEEEEE----C-CeEEEeeccCCccccHHHHHHHHHHHH
Confidence            567999999999999987765543     233   679999999998    5 899999999999 99999999999999


Q ss_pred             hhcCCCCCCCCcCCCCCeeEEEEeccCcccc-----CCccCCcccceeEEEEEeCCCCCCCceeeecCchhhccCCCHHH
Q 028185           76 ALKDRRFPPIQARELPSLECTVSILTDFETA-----NNYLDWEVGTHGLIIEFTDPEYSTRRSATYLPEVAAHEGWTKVE  150 (212)
Q Consensus        76 A~~DpRF~Pl~~~EL~~l~ieVSvL~~~e~~-----~d~~d~~~G~hGlii~~~~~~~~~~~~~t~LP~Va~E~~w~~~~  150 (212)
                      ||+||||+||+++||++|.|+||||++|+++     +++.+|+||+|||+|++      +.++||||||||+|+|||+++
T Consensus        82 A~~DpRF~Pl~~~EL~~l~ieVsvLs~~e~~~~~~~~~~~~~~~G~hGlii~~------g~~~g~lLPqVa~E~gWd~ee  155 (207)
T 1zq7_A           82 ATRDPRFPTVEQDEMKNILVEVTILTQPEKINASPKELPDKVEIGKHGLIVKQ------GYCQGLLLPQVAPENDMDSID  155 (207)
T ss_dssp             HHSCTTSCCCCGGGGGGCEEEEEEECCCEECCSCTTTHHHHCCTTTCEEEEEE------TTEEEEECTTHHHHTTCCHHH
T ss_pred             ccCCCCCCCCCHHHHcCcEEEEEEccCCEEcccccccCHHHcCCCCceEEEEE------CCeeeEECCcchhhcCCCHHH
Confidence            9999999999999999999999999999999     78899999999999999      899999999999999999999


Q ss_pred             HHHHHHHHcCCCCCCcccccCcEEEEEEEEEEEEee
Q 028185          151 AIDSLMRKAGFSGPITESLRKRIRLTRYQSTLFALH  186 (212)
Q Consensus       151 ~l~~l~~KAG~~~~~~~~~~~~i~v~ry~~~~~~~~  186 (212)
                      ||++||+||||++   +.|.++++|+|||+++|++.
T Consensus       156 fl~~l~~KAG~~~---~~w~~~~~v~rf~~~~~~E~  188 (207)
T 1zq7_A          156 FLSHTCMKAGLSP---DAWVKGAEVYCFEGQIFKEK  188 (207)
T ss_dssp             HHHHHHHHTTBCG---GGGTTTCEEEEECEEEEEES
T ss_pred             HHHHHHHhcCCCh---hhccCceEEEEEEEEEEEEe
Confidence            9999999999998   56666999999999999983

>1vaj_A Hypothetical protein PH0010; alpha + beta fold, structural genomics, unknown function; 1.82A {Pyrococcus horikoshii} SCOP: d.309.1.1

Probab=100.00  E-value=6.8e-59  Score=398.06  Aligned_cols=173  Identities=25%  Similarity=0.350  Sum_probs=156.1

Q ss_pred             chHHHHHHHHHHHHhhcCCCCC--CCCCC---CCCCceEEEEEEeccCCCCcceeeecccCc-ccHHHHHHHHHHHhhhc
Q 028185            5 NREMAVYCFDTLVAHYNSEDAP--PPAFD---EGQHPLFVTWKKVVNGGEPRLRGCIGTLEA-RCLINGFKDYALTSALK   78 (212)
Q Consensus         5 ~~~~~~~Ar~aI~~~L~~~~~~--~~~~~---~~~~g~FVTl~~~~~~~~~~LRGCIGt~~p-~pL~~~i~~~A~~AA~~   78 (212)
                      .+.||++||++|.++|++++.+  ++.++   ++++||||||++.+++.+|+||||||||+| +||+++|++||++|||+
T Consensus        10 g~~lv~lAR~aI~~~L~~~~~~~~p~~~~~~l~~~~g~FVTl~~~~~~~~g~LRGCIGt~~p~~~L~~~i~~~Ai~AA~~   89 (214)
T 1vaj_A           10 GEFLVRLARRAIEEYLKTGKEIEPPKDTPPELWEKMGVFVTLNRYNVPPQTALRGCIGFPTPIYPLVEATIKAAIYSAVD   89 (214)
T ss_dssp             HHHHHHHHHHHHHHHHHHSCCCCCCTTCCGGGGSBCEEEEEEEETTSCGGGTEEEEEEESSSCSBHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHHHHHccCCCCCCCcccChhhcCcccEEEEEEECcCCCCCceeeeecCCCccccHHHHHHHHHHHhccC
Confidence            4679999999999999876654  22343   679999999997533324899999999999 99999999999999999


Q ss_pred             CCCCCCCCcCCCCCeeEEEEeccCcccc-----CCccCCcccceeEEEEEeCCCCCCCceeeecCchhhccCCCHHHHHH
Q 028185           79 DRRFPPIQARELPSLECTVSILTDFETA-----NNYLDWEVGTHGLIIEFTDPEYSTRRSATYLPEVAAHEGWTKVEAID  153 (212)
Q Consensus        79 DpRF~Pl~~~EL~~l~ieVSvL~~~e~~-----~d~~d~~~G~hGlii~~~~~~~~~~~~~t~LP~Va~E~~w~~~~~l~  153 (212)
                      ||||+||+++||++|.|+||||++||++     +++.+|+||+|||+|++      +.++||||||||+|++||+++||+
T Consensus        90 DpRF~Pl~~~EL~~l~ieVsvL~~~e~i~~~~~~~~~~~~~G~hGlii~~------g~~~g~~LPqV~~E~~W~~~e~l~  163 (214)
T 1vaj_A           90 DPRFPPVKLEEMDNLVVEVSVLTPPELIEGPPEERPRKIKVGRDGLIVEK------GIYSGLLLPQVPVEWGWDEEEFLA  163 (214)
T ss_dssp             CTTSCCCCGGGGGGEEEEEEEECCCEECCSCGGGGGGGCCTTTCEEEEEE------TTEEEEECTHHHHHHTCCHHHHHH
T ss_pred             CCCCCCCCHHHhcCcEEEEEEcCCcEEcccccccCHHHcCCCCceEEEEe------CCeeEEECCCchhhcCCCHHHHHH
Confidence            9999999999999999999999999999     57889999999999999      899999999999999999999999


Q ss_pred             HHHHHcCCCCCCcccc-cCcEEEEEEEEEEEEee
Q 028185          154 SLMRKAGFSGPITESL-RKRIRLTRYQSTLFALH  186 (212)
Q Consensus       154 ~l~~KAG~~~~~~~~~-~~~i~v~ry~~~~~~~~  186 (212)
                      +||+||||+++   .| .++++|+|||+++|++.
T Consensus       164 ~l~~KAG~~~d---~w~~~~~~l~rf~~~~f~E~  194 (214)
T 1vaj_A          164 ETCWKAGLPPD---CWLDEDTKVYKFTAEIFEEE  194 (214)
T ss_dssp             HHHHHTTSCTT---GGGCTTSEEEEECEEEEEES
T ss_pred             HHHHHcCCCcc---cccCCCeEEEEEEEEEEEEe
Confidence            99999999983   44 46899999999999984

>1wsc_A Hypothetical protein ST0229; structural genomics, function unknown protein, unknown function; 2.45A {Sulfolobus tokodaii} SCOP: d.309.1.1

Probab=100.00  E-value=5.4e-58  Score=396.06  Aligned_cols=176  Identities=24%  Similarity=0.363  Sum_probs=156.0

Q ss_pred             chHHHHHHHHHHHHhhcCCCCCCC-C----CC---CCCCceEEEEEEeccCCCCcceeeecccCc-ccHHHHHHHHHHHh
Q 028185            5 NREMAVYCFDTLVAHYNSEDAPPP-A----FD---EGQHPLFVTWKKVVNGGEPRLRGCIGTLEA-RCLINGFKDYALTS   75 (212)
Q Consensus         5 ~~~~~~~Ar~aI~~~L~~~~~~~~-~----~~---~~~~g~FVTl~~~~~~~~~~LRGCIGt~~p-~pL~~~i~~~A~~A   75 (212)
                      .+.||.+||++|.++|++++.+++ .    ++   ++++||||||++.+..+ |+||||||||+| +||+++|++||++|
T Consensus        17 ~~~lv~lAR~aI~~~L~~~~~~~p~~~~~~~~~~l~~~~g~FVTl~~~~~~~-g~LRGCIGt~~p~~~L~~~i~~~Ai~A   95 (230)
T 1wsc_A           17 GKVLIKIARDSIANKLGILKINLEDYLSSLNDPILNKKGLAFVTLETYYGNS-TSLRGCIGYVEAVAPLKEIVSKAAIAA   95 (230)
T ss_dssp             HHHHHHHHHHHHHHHHTCSCSCHHHHHHHCCCGGGGSEEEEEEEEEEECSSC-EEEEEEEEEEEEEEEHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHccCCCCCCccccccCchhhcCcccEEEEEEECCCCC-CceeeeecCCCccccHHHHHHHHHHHh
Confidence            567999999999999988765322 1    33   78999999999643224 899999999999 99999999999999


Q ss_pred             hhcCCCCCCCCcCCCCCeeEEEEeccCccccC------CccCCcccceeEEEEEeCCCCCCCceeeecCchhhccCCCHH
Q 028185           76 ALKDRRFPPIQARELPSLECTVSILTDFETAN------NYLDWEVGTHGLIIEFTDPEYSTRRSATYLPEVAAHEGWTKV  149 (212)
Q Consensus        76 A~~DpRF~Pl~~~EL~~l~ieVSvL~~~e~~~------d~~d~~~G~hGlii~~~~~~~~~~~~~t~LP~Va~E~~w~~~  149 (212)
                      ||+||||+||+++||++|.|+||||++||+++      ++.+|+||+|||+|++     |++++||||||||.|++||++
T Consensus        96 A~~DpRF~Pl~~~EL~~l~ieVsvLs~~e~i~~~~~~~~~~~~~~G~hGlii~~-----g~~~~g~lLPqV~~e~~w~~e  170 (230)
T 1wsc_A           96 AFSDPRFPPLSKGEFDNIIIEVTVLTKPQEIDVENRWELPKKIKVGEDGLIVEY-----GILYSGLLLPQVPMEYCWDEE  170 (230)
T ss_dssp             HHTCTTSCCCCHHHHTTEEEEEEEECCCEECCCSCGGGGGGGCCTTTCEEEEEE-----TTTEEEEECTHHHHHTTCCHH
T ss_pred             ccCCCCCCCCCHHHHcCcEEEEEEcCCcEEcccCCcccCHHHcCCCCCeEEEee-----CCCceEEECCCcccccCCCHH
Confidence            99999999999999999999999999999994      6789999999999999     339999999999999999999


Q ss_pred             HHHHHHHHHcCCCCCCcccccCcEEEEEEEEEEEEeeHH
Q 028185          150 EAIDSLMRKAGFSGPITESLRKRIRLTRYQSTLFALHYS  188 (212)
Q Consensus       150 ~~l~~l~~KAG~~~~~~~~~~~~i~v~ry~~~~~~~~~~  188 (212)
                      +||++||+||||+++  .|..++++|+|||+++|++.+.
T Consensus       171 efl~~l~~KAGl~~~--~w~~~~~~v~rf~~~~f~E~~p  207 (230)
T 1wsc_A          171 TFLAETCIKAGLEPD--CWLNNKVKIKKFQGIIFREEKP  207 (230)
T ss_dssp             HHHHHHHHHHTSCTT--GGGCTTSEEEEECEEEEEESST
T ss_pred             HHHHHHHHhCCCCCc--ccccCceEEEEEEEEEEEecCC
Confidence            999999999999984  3334589999999999998543

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	212
d1vaja1	203	d.309.1.1 (A:3-205) Hypothetical protein PH0010 {A	2e-49
d1wsca1	225	d.309.1.1 (A:3-227) Hypothetical protein ST0229 {S	9e-47
d1zq7a1	199	d.309.1.1 (A:1-199) Hypothetical protein MM0484 {M	4e-43

>d1vaja1 d.309.1.1 (A:3-205) Hypothetical protein PH0010 {Archaeon Pyrococcus horikoshii [TaxId: 53953]} Length = 203

class: Alpha and beta proteins (a+b)
fold: AMMECR1-like
superfamily: AMMECR1-like
family: AMMECR1-like
domain: Hypothetical protein PH0010
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

 Score =  158 bits (400), Expect = 2e-49
 Identities = 46/171 (26%), Positives = 70/171 (40%), Gaps = 15/171 (8%)

Query: 23  EDAPPPAFDEGQHPLFVTWKKVVNGGEPRLRGCIGTLEARC-LINGFKDYALTSALKDRR 81
               PP   E +  +FVT  +     +  LRGCIG       L+      A+ SA+ D R
Sbjct: 32  PKDTPPELWE-KMGVFVTLNRYNVPPQTALRGCIGFPTPIYPLVEATIKAAIYSAVDDPR 90

Query: 82  FPPIQARELPSLECTVSILTDFETANN-----YLDWEVGTHGLIIEFTDPEYSTRRSATY 136
           FPP++  E+ +L   VS+LT  E             +VG  GLI+E          S   
Sbjct: 91  FPPVKLEEMDNLVVEVSVLTPPELIEGPPEERPRKIKVGRDGLIVEK------GIYSGLL 144

Query: 137 LPEVAAHEGWTKVEAIDSLMRKAGFSGPITESLRKRIRLTRYQSTLFALHY 187
           LP+V    GW + E +     KAG          +  ++ ++ + +F   Y
Sbjct: 145 LPQVPVEWGWDEEEFLAETCWKAGLPPDCWLD--EDTKVYKFTAEIFEEEY 193

>d1wsca1 d.309.1.1 (A:3-227) Hypothetical protein ST0229 {Sulfolobus tokodaii [TaxId: 111955]} Length = 225

class: Alpha and beta proteins (a+b)
fold: AMMECR1-like
superfamily: AMMECR1-like
family: AMMECR1-like
domain: Hypothetical protein ST0229
species: Sulfolobus tokodaii [TaxId: 111955]

 Score =  151 bits (383), Expect = 9e-47
 Identities = 44/168 (26%), Positives = 70/168 (41%), Gaps = 16/168 (9%)

Query: 23  EDAPPPAFDEGQHPLFVTWKKVVNGGEPRLRGCIGTLEA-RCLINGFKDYALTSALKDRR 81
                P  ++ +   FVT +    G    LRGCIG +EA   L       A+ +A  D R
Sbjct: 42  SSLNDPILNK-KGLAFVTLETY-YGNSTSLRGCIGYVEAVAPLKEIVSKAAIAAAFSDPR 99

Query: 82  FPPIQARELPSLECTVSILTDFETANNYLDWE------VGTHGLIIEFTDPEYSTRRSAT 135
           FPP+   E  ++   V++LT  +  +    WE      VG  GLI+E+         S  
Sbjct: 100 FPPLSKGEFDNIIIEVTVLTKPQEIDVENRWELPKKIKVGEDGLIVEYGI-----LYSGL 154

Query: 136 YLPEVAAHEGWTKVEAIDSLMRKAGFSGPITESLRKRIRLTRYQSTLF 183
            LP+V     W +   +     KAG        L  ++++ ++Q  +F
Sbjct: 155 LLPQVPMEYCWDEETFLAETCIKAGLEPDCW--LNNKVKIKKFQGIIF 200

>d1zq7a1 d.309.1.1 (A:1-199) Hypothetical protein MM0484 {Methanosarcina mazei [TaxId: 2209]} Length = 199

class: Alpha and beta proteins (a+b)
fold: AMMECR1-like
superfamily: AMMECR1-like
family: AMMECR1-like
domain: Hypothetical protein MM0484
species: Methanosarcina mazei [TaxId: 2209]

 Score =  141 bits (357), Expect = 4e-43
 Identities = 45/168 (26%), Positives = 71/168 (42%), Gaps = 21/168 (12%)

Query: 22  SEDAPPPAFDEGQHPLFVTWKKVVNGGEPRLRGCIGTLEA-RCLINGFKDYALTSALKDR 80
           S     P F+E    +FVT  +   G    LRGCIG       L     D A+++A +D 
Sbjct: 33  SGVELSPVFEE-YRGVFVTLTE--GG---LLRGCIGHPYPDSTLKEAILDSAISAATRDP 86

Query: 81  RFPPIQARELPSLECTVSILTDFETANNYL-----DWEVGTHGLIIEFTDPEYSTRRSAT 135
           RFP ++  E+ ++   V+ILT  E  N          E+G HGLI++             
Sbjct: 87  RFPTVEQDEMKNILVEVTILTQPEKINASPKELPDKVEIGKHGLIVKQ------GYCQGL 140

Query: 136 YLPEVAAHEGWTKVEAIDSLMRKAGFSGPITESLRKRIRLTRYQSTLF 183
            LP+VA       ++ +     KAG S    ++  K   +  ++  +F
Sbjct: 141 LLPQVAPENDMDSIDFLSHTCMKAGLSP---DAWVKGAEVYCFEGQIF 185

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	212
d1zq7a1	199	Hypothetical protein MM0484 {Methanosarcina mazei	100.0
d1vaja1	203	Hypothetical protein PH0010 {Archaeon Pyrococcus h	100.0
d1wsca1	225	Hypothetical protein ST0229 {Sulfolobus tokodaii [	100.0

>d1zq7a1 d.309.1.1 (A:1-199) Hypothetical protein MM0484 {Methanosarcina mazei [TaxId: 2209]}

class: Alpha and beta proteins (a+b)
fold: AMMECR1-like
superfamily: AMMECR1-like
family: AMMECR1-like
domain: Hypothetical protein MM0484
species: Methanosarcina mazei [TaxId: 2209]

Probab=100.00  E-value=9.2e-58  Score=385.22  Aligned_cols=169  Identities=27%  Similarity=0.418  Sum_probs=154.3

Q ss_pred             chHHHHHHHHHHHHhhcCCCCCCCC-----CC---CCCCceEEEEEEeccCCCCcceeeecccCc-ccHHHHHHHHHHHh
Q 028185            5 NREMAVYCFDTLVAHYNSEDAPPPA-----FD---EGQHPLFVTWKKVVNGGEPRLRGCIGTLEA-RCLINGFKDYALTS   75 (212)
Q Consensus         5 ~~~~~~~Ar~aI~~~L~~~~~~~~~-----~~---~~~~g~FVTl~~~~~~~~~~LRGCIGt~~p-~pL~~~i~~~A~~A   75 (212)
                      ...++++||++|.++|++++.+.++     ++   .+++||||||++    + |+||||||++.| +||+++|++||++|
T Consensus         7 ~~~Ll~lAR~ai~~~l~~~~~~~p~~~~~~~~~~l~~~~g~FVTL~~----~-g~LRGCIGs~~p~~pL~~~v~~~A~~A   81 (199)
T d1zq7a1           7 GRAAVKLARKTIEIFLSKGKSPRPDASGVELSPVFEEYRGVFVTLTE----G-GLLRGCIGHPYPDSTLKEAILDSAISA   81 (199)
T ss_dssp             HHHHHHHHHHHHHHHHHHSCCCC---CCCCCCGGGGSBCCEEEEEEE----T-TEEEEEEEECSCCSBHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHccCCCCCCCcccccCChhHccceeEEEEEEE----C-CEEeEeecccCcchhHHHHHHHHHHHH
Confidence            4679999999999999877665321     22   679999999999    6 899999999999 99999999999999


Q ss_pred             hhcCCCCCCCCcCCCCCeeEEEEeccCccccCC-----ccCCcccceeEEEEEeCCCCCCCceeeecCchhhccCCCHHH
Q 028185           76 ALKDRRFPPIQARELPSLECTVSILTDFETANN-----YLDWEVGTHGLIIEFTDPEYSTRRSATYLPEVAAHEGWTKVE  150 (212)
Q Consensus        76 A~~DpRF~Pl~~~EL~~l~ieVSvL~~~e~~~d-----~~d~~~G~hGlii~~~~~~~~~~~~~t~LP~Va~E~~w~~~~  150 (212)
                      ||+||||+||+.+||++|.|+||||+++++++.     +.+|+||+|||+|+.      ++++||||||||.||+||+++
T Consensus        82 A~~DpRF~pl~~~El~~l~ieVsvLs~~e~i~~~~~el~~~l~~g~~Glii~~------g~~~g~fLP~V~~e~~~d~~e  155 (199)
T d1zq7a1          82 ATRDPRFPTVEQDEMKNILVEVTILTQPEKINASPKELPDKVEIGKHGLIVKQ------GYCQGLLLPQVAPENDMDSID  155 (199)
T ss_dssp             HHSCTTSCCCCGGGGGGCEEEEEEECCCEECCSCTTTHHHHCCTTTCEEEEEE------TTEEEEECTTHHHHTTCCHHH
T ss_pred             HhCCCCCCCCCHHHhcCCEEEEEECCCcEEccCChhhhHHHhccccceEEEEe------CCcceEECCcchhhcCCCHHH
Confidence            999999999999999999999999999999963     568999999999999      889999999999999999999


Q ss_pred             HHHHHHHHcCCCCCCcccccCcEEEEEEEEEEEEeeH
Q 028185          151 AIDSLMRKAGFSGPITESLRKRIRLTRYQSTLFALHY  187 (212)
Q Consensus       151 ~l~~l~~KAG~~~~~~~~~~~~i~v~ry~~~~~~~~~  187 (212)
                      ||++||+|||+++   ++|.++++++||++++|++.-
T Consensus       156 fL~~l~~KAGlp~---d~w~~~~~~~rf~~~~f~E~~  189 (199)
T d1zq7a1         156 FLSHTCMKAGLSP---DAWVKGAEVYCFEGQIFKEKE  189 (199)
T ss_dssp             HHHHHHHHTTBCG---GGGTTTCEEEEECEEEEEESS
T ss_pred             HHHHHHHHcCCCc---ccccCCcEEEEEEEEEEEEcC
Confidence            9999999999998   577789999999999999863

>d1vaja1 d.309.1.1 (A:3-205) Hypothetical protein PH0010 {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a+b)
fold: AMMECR1-like
superfamily: AMMECR1-like
family: AMMECR1-like
domain: Hypothetical protein PH0010
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=100.00  E-value=1.2e-57  Score=385.55  Aligned_cols=174  Identities=25%  Similarity=0.363  Sum_probs=154.8

Q ss_pred             hHHHHHHHHHHHHhhcCCCCC--CCCCC---CCCCceEEEEEEeccCCCCcceeeecccCc-ccHHHHHHHHHHHhhhcC
Q 028185            6 REMAVYCFDTLVAHYNSEDAP--PPAFD---EGQHPLFVTWKKVVNGGEPRLRGCIGTLEA-RCLINGFKDYALTSALKD   79 (212)
Q Consensus         6 ~~~~~~Ar~aI~~~L~~~~~~--~~~~~---~~~~g~FVTl~~~~~~~~~~LRGCIGt~~p-~pL~~~i~~~A~~AA~~D   79 (212)
                      ..++.+||++|.++|+++..+  +..++   +.++||||||++.....+|+||||||+++| +||+++|++||++|||+|
T Consensus         9 ~~Ll~lAR~ai~~~l~~g~~~~~~~~~~~~l~~~~g~FVTl~~~~~~~~g~LRGCIG~~~p~~pL~~~v~~~A~~AA~~D   88 (203)
T d1vaja1           9 EFLVRLARRAIEEYLKTGKEIEPPKDTPPELWEKMGVFVTLNRYNVPPQTALRGCIGFPTPIYPLVEATIKAAIYSAVDD   88 (203)
T ss_dssp             HHHHHHHHHHHHHHHHHSCCCCCCTTCCGGGGSBCEEEEEEEETTSCGGGTEEEEEEESSSCSBHHHHHHHHHHHHHHCC
T ss_pred             HHHHHHHHHHHHHHHccCCCCCCCccCCHHHcCceEEEEEEEEcccCCCCceeeeecccCCchhHHHHHHHHHHHHHhCC
Confidence            568999999999999766543  22333   679999999998433223899999999999 899999999999999999


Q ss_pred             CCCCCCCcCCCCCeeEEEEeccCccccC-----CccCCcccceeEEEEEeCCCCCCCceeeecCchhhccCCCHHHHHHH
Q 028185           80 RRFPPIQARELPSLECTVSILTDFETAN-----NYLDWEVGTHGLIIEFTDPEYSTRRSATYLPEVAAHEGWTKVEAIDS  154 (212)
Q Consensus        80 pRF~Pl~~~EL~~l~ieVSvL~~~e~~~-----d~~d~~~G~hGlii~~~~~~~~~~~~~t~LP~Va~E~~w~~~~~l~~  154 (212)
                      |||+||+++||++|.|+||||+++++++     ++.+|++|+|||+|++      ++++||||||||.||+||+++||.+
T Consensus        89 pRF~Pl~~~El~~l~ieVsvLs~~e~i~~~~~~~~~~~~~G~~Glii~~------g~~~g~fLP~Va~e~~w~~~~fl~~  162 (203)
T d1vaja1          89 PRFPPVKLEEMDNLVVEVSVLTPPELIEGPPEERPRKIKVGRDGLIVEK------GIYSGLLLPQVPVEWGWDEEEFLAE  162 (203)
T ss_dssp             TTSCCCCGGGGGGEEEEEEEECCCEECCSCGGGGGGGCCTTTCEEEEEE------TTEEEEECTHHHHHHTCCHHHHHHH
T ss_pred             CCCCCCCHHHHcCcEEEEEECCCCEECCCCchhCHHHccCcceEEEEEe------CCcceEECCCcccccCCCHHHHHHH
Confidence            9999999999999999999999999986     4667999999999999      8899999999999999999999999


Q ss_pred             HHHHcCCCCCCcccc-cCcEEEEEEEEEEEEeeHH
Q 028185          155 LMRKAGFSGPITESL-RKRIRLTRYQSTLFALHYS  188 (212)
Q Consensus       155 l~~KAG~~~~~~~~~-~~~i~v~ry~~~~~~~~~~  188 (212)
                      ||+|||++++   .| .++++++||++++|++.+.
T Consensus       163 l~~KAGl~~~---~w~~~~~~~~rf~~~~f~E~~p  194 (203)
T d1vaja1         163 TCWKAGLPPD---CWLDEDTKVYKFTAEIFEEEYP  194 (203)
T ss_dssp             HHHHTTSCTT---GGGCTTSEEEEECEEEEEESST
T ss_pred             HHHHcCCCCC---cCCCCCeEEEEEEEEEEEecCC
Confidence            9999999984   44 4589999999999999764

>d1wsca1 d.309.1.1 (A:3-227) Hypothetical protein ST0229 {Sulfolobus tokodaii [TaxId: 111955]}

class: Alpha and beta proteins (a+b)
fold: AMMECR1-like
superfamily: AMMECR1-like
family: AMMECR1-like
domain: Hypothetical protein ST0229
species: Sulfolobus tokodaii [TaxId: 111955]

Probab=100.00  E-value=2.1e-55  Score=376.54  Aligned_cols=173  Identities=23%  Similarity=0.369  Sum_probs=153.4

Q ss_pred             hHHHHHHHHHHHHhhcCCCCCCC--------CCCCCCCceEEEEEEeccCCCCcceeeecccCc-ccHHHHHHHHHHHhh
Q 028185            6 REMAVYCFDTLVAHYNSEDAPPP--------AFDEGQHPLFVTWKKVVNGGEPRLRGCIGTLEA-RCLINGFKDYALTSA   76 (212)
Q Consensus         6 ~~~~~~Ar~aI~~~L~~~~~~~~--------~~~~~~~g~FVTl~~~~~~~~~~LRGCIGt~~p-~pL~~~i~~~A~~AA   76 (212)
                      ..|+.+||++|.++|.++..+++        +..++++||||||++....+ |+|||||||+.| .||+++|++||++||
T Consensus        16 ~~Ll~lAR~aI~~~l~~~~~~~~~~~~~~~~~~L~~~~g~FVTl~~~~~~~-g~LRGCIGt~~~~~pL~~~v~~~A~~AA   94 (225)
T d1wsca1          16 KVLIKIARDSIANKLGILKINLEDYLSSLNDPILNKKGLAFVTLETYYGNS-TSLRGCIGYVEAVAPLKEIVSKAAIAAA   94 (225)
T ss_dssp             HHHHHHHHHHHHHHHTCSCSCHHHHHHHCCCGGGGSEEEEEEEEEEECSSC-EEEEEEEEEEEEEEEHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHccCCCCccccccccCchhhcCceeEEEEEEEccCCC-CceeEEeccCCcchhHHHHHHHHHHHHH
Confidence            46899999999999998875421        12268999999999765445 899999999999 899999999999999


Q ss_pred             hcCCCCCCCCcCCCCCeeEEEEeccCccccCC------ccCCcccceeEEEEEeCCCCCCCceeeecCchhhccCCCHHH
Q 028185           77 LKDRRFPPIQARELPSLECTVSILTDFETANN------YLDWEVGTHGLIIEFTDPEYSTRRSATYLPEVAAHEGWTKVE  150 (212)
Q Consensus        77 ~~DpRF~Pl~~~EL~~l~ieVSvL~~~e~~~d------~~d~~~G~hGlii~~~~~~~~~~~~~t~LP~Va~E~~w~~~~  150 (212)
                      |+||||+||+++||++|.|+||||+++++++.      +.+++||+|||+|++     |.+++||||||||.||+||+++
T Consensus        95 ~~DpRF~Pl~~~EL~~l~ieVsvLs~~e~i~~~~~~el~~~l~~G~hGlii~~-----g~~~~g~fLPqVa~e~~wd~e~  169 (225)
T d1wsca1          95 FSDPRFPPLSKGEFDNIIIEVTVLTKPQEIDVENRWELPKKIKVGEDGLIVEY-----GILYSGLLLPQVPMEYCWDEET  169 (225)
T ss_dssp             HTCTTSCCCCHHHHTTEEEEEEEECCCEECCCSCGGGGGGGCCTTTCEEEEEE-----TTTEEEEECTHHHHHTTCCHHH
T ss_pred             hCCCCcCCCCHHHHhCeEEEEEECCCCEECCCCChHHhHHhcCCCcceEEEEE-----CCcceEEECCCcccccCCCHHH
Confidence            99999999999999999999999999999975      346789999999999     4468999999999999999999


Q ss_pred             HHHHHHHHcCCCCCCcccc-cCcEEEEEEEEEEEEeeH
Q 028185          151 AIDSLMRKAGFSGPITESL-RKRIRLTRYQSTLFALHY  187 (212)
Q Consensus       151 ~l~~l~~KAG~~~~~~~~~-~~~i~v~ry~~~~~~~~~  187 (212)
                      ||.+||+||||+++   +| .++++|+||++++|+|.-
T Consensus       170 fL~~l~~KAGl~~d---~W~~~~~~v~rf~~~~F~E~~  204 (225)
T d1wsca1         170 FLAETCIKAGLEPD---CWLNNKVKIKKFQGIIFREEK  204 (225)
T ss_dssp             HHHHHHHHHTSCTT---GGGCTTSEEEEECEEEEEESS
T ss_pred             HHHHHHHhcCCCCC---ccCCCCeEEEEEEEEEEEEcC
Confidence            99999999999984   44 458999999999999853