Citrus Sinensis ID: 028191

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210--
Protein Sequence
MDISLWLKLLFAVELALIFSHTEKYPDEPPLLNVKSLRGIQAGDLKILKEKLEQEASENLGMAMIYTLVTSAKEWLSERYSQDAGIDNTGEEELEKDEVIVPHGEPVTVETFLAWRERFEAELALERAKLMPESALTAPKEKKLTGRQWFESGRATAVSQKGAVTVNEVSDDEDDEDIDFDDDDFEDDEVDMLEHYLAEKSDSSTHSSRQPS
Secondary Structure (PSIPRED)
cccccccEEcccEEEEEEEEcccccccccccEEEEccccccHHHHHHHHHHHHHHHHHccccEEEHHHHHHHHHHHHHHHHccccccccHHHHHHcccccccccccccHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccHHHHHcccccccccccccccccccccccccccccccccccccHHHHHccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
ccHHHHHHHHHEEEEEEEEEccccccccccEEEEEccccccHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHcccccccccccccEEccccccHHHHHHccccccccccHHHHHHHHHHHHccccccccccccc
Coil and Loop (DISEMBL)
MDISLWLKLLFAVELALIFShtekypdeppllnvkslrgiqaGDLKILKEKLEQEASENLGMAMIYTLVTSAKEWLSErysqdagidntgeeelekdevivphgepvtvETFLAWRERFEAELALERAKLmpesaltapkekkltgrqwfesgratAVSQKGavtvnevsddeddedidfddddfedDEVDMLEHYLAeksdssthssrqps
Flexible Loop (DISEMBL)
MDISLWLKLLFAVELALIFSHtekypdeppllnVKSLRGIQAGDLKILKEKLEQEASENLGMAMIYTLVTSAKEWLSERYSQDAGIDNTGeeelekdevivphgepvtVETFLAWRERFEAELALERAKlmpesaltapkekkltgrqwfesgratavsqkgavtvnevsddeddedidFDDDDFEDDEVDMLEHYlaeksdssthssrqps
Low Complexity Region (SEG)
MDISLWLKLLFAVELALIFSHTEKYPDEPPLLNVKSLRGIQAGDLKILKEKLEQEASENLGMAMIYTLVTSAKEWLSERYSQDAGIDNTGEEELEKDEVIVPHGEPVTVETFlawrerfeaelaleraklMPESALTAPKEKKLTGRQWFESGRATAVSQKGAVTVNEVSddeddedidfddddfeddevdMLEHYLAEKSDSSTHSSRQPS
Disordered region (IsUnstruct)
**ISLWLKLLFAVELALIFSHTEKYPDEPPLLNVKSLRGIQAGDLKILKEKL*****ENLGMAMIYTLVTSAKEWLSERY*****************EVIVPHGEPVTVETFLAWRERFEAELALE**************************************************************************************
Disordered Region (DISOPRED)
****LWLKLLFAVELALIFSHTEKYPDEPPLLNVKSLRGIQAGDLKILKEKLEQEASENLGMAMIYTLVTSAKEWLSER***************************VTVETFLAWRERF*****************************WFESGRATAVSQKGAVTVNEVSDDEDDEDIDFDDDDFEDDEVDMLE******************
Disordered Region (DISEMBL)
MDISLWLKLLFAVELALIFSHTEKYPDEPPLLNVKSLRGIQAGDLKILKEKLEQEASENLGMAMIYTLVTSAKEWLSERYSQDAGIDNTGEEELEKDEVIVPHGEPVTVETFLAWRERFEAELALERAKLMPESALTAPKEKKLTGRQWFESGRATAVSQKGAVTVNEVSDDEDDEDIDFDDDDFEDDEVDMLEHYLA**************
Disordered Region (DISPRO)
*DISLWLKLLFAVELALIFSHTEKYPDEPPLLNVKSLRGIQAGDLKILKEKLEQEASENLGMAMIYTLVTSAKEWLSERYSQDAGIDNTGEEELEKDEVIVPHGEPVTVETFLAWRERFEAELALERAKLMPESAL***********************************************DFEDDEVDMLEHYLAEK************
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
SSSSSSSSSSSSSSSSoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
SSSSSSSSSSSSSSSSSSSSSSSooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MDISLWLKLLFAVELALIFSHTEKYPDEPPLLNVKSLRGIQAGDLKILKEKLEQEASENLGMAMIYTLVTSAKEWLSERYSQDAGIDNTGEEELEKDEVIVPHGEPVTVETFLAWRERFEAELALERAKLMPESALTAPKEKKLTGRQWFESGRATAVSQKGAVTVNEVSDDEDDEDIDFDDDDFEDDEVDMLEHYLAEKSDSSTHSSRQPS
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	212	2.2.26 [Sep-21-2011]
Q9CQK7	243	RWD domain-containing pro	yes	no	0.655	0.572	0.386	5e-17
Q99ND9	243	RWD domain-containing pro	yes	no	0.655	0.572	0.386	5e-17
Q9H446	243	RWD domain-containing pro	yes	no	0.655	0.572	0.386	1e-16
O94721	215	RWD domain-containing pro	yes	no	0.646	0.637	0.312	1e-08
Q03768	265	Protein GIR2 OS=Saccharom	yes	no	0.424	0.339	0.383	4e-07

>sp|Q9CQK7|RWDD1_MOUSE RWD domain-containing protein 1 OS=Mus musculus GN=Rwdd1 PE=1 SV=1

 Score = 87.8 bits (216), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 56/145 (38%), Positives = 84/145 (57%), Gaps = 6/145 (4%)

Query: 12  AVELALIFSHTEKYPDEPPLLNVKSLRGIQAGDLKILKEKLEQEASENLGMAMIYTLVTS 71
            V+  L F+++EKYPDE PL  + S   ++  D+  + + L  +A ENLGM MI+TLVT+
Sbjct: 47  TVQTTLKFTYSEKYPDETPLYEIFSQENLEDNDVSDILKLLALQAEENLGMVMIFTLVTA 106

Query: 72  AKEWLSERYSQ----DAGIDNTGEEELEKDEVIVPHGEPVTVETFLAWRERFEAELALER 127
            +E L+E   Q            E+E E+ E  + HG PVT+E FL+W+ +F+AEL   +
Sbjct: 107 VQEKLNEIVDQIKTRREEEKKQKEKEAEEAEKKLFHGTPVTIENFLSWKAKFDAELLEIK 166

Query: 128 AKLMPESALTAPKEKKLTGRQWFES 152
            K M E       + KL+G+Q FE+
Sbjct: 167 KKRMKEEEQAG--KNKLSGKQLFET 189

Protects DRG2 from proteolytic degradation.
Mus musculus (taxid: 10090)

>sp|Q99ND9|RWDD1_RAT RWD domain-containing protein 1 OS=Rattus norvegicus GN=Rwdd1 PE=2 SV=1

 Score = 87.8 bits (216), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 56/145 (38%), Positives = 84/145 (57%), Gaps = 6/145 (4%)

Query: 12  AVELALIFSHTEKYPDEPPLLNVKSLRGIQAGDLKILKEKLEQEASENLGMAMIYTLVTS 71
            V+  L F+++EKYPDE PL  + S   ++  D+  + + L  +A ENLGM MI+TLVT+
Sbjct: 47  TVQTTLKFTYSEKYPDEAPLYEIFSQENLEDNDVSDILKLLALQAEENLGMVMIFTLVTA 106

Query: 72  AKEWLSERYSQ----DAGIDNTGEEELEKDEVIVPHGEPVTVETFLAWRERFEAELALER 127
            +E L+E   Q            E+E E+ E  + HG PVT+E FL+W+ +F+AEL   +
Sbjct: 107 VQEKLNEIVDQIKTRREEEKKQKEKEAEEAEKKLFHGTPVTIENFLSWKAKFDAELLEIK 166

Query: 128 AKLMPESALTAPKEKKLTGRQWFES 152
            K M E       + KL+G+Q FE+
Sbjct: 167 KKRMKEEEQAG--KNKLSGKQLFET 189

Protects DRG2 from proteolytic degradation.

Rattus norvegicus (taxid: 10116)

>sp|Q9H446|RWDD1_HUMAN RWD domain-containing protein 1 OS=Homo sapiens GN=RWDD1 PE=1 SV=1

 Score = 86.7 bits (213), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 56/145 (38%), Positives = 83/145 (57%), Gaps = 6/145 (4%)

Query: 12  AVELALIFSHTEKYPDEPPLLNVKSLRGIQAGDLKILKEKLEQEASENLGMAMIYTLVTS 71
            V+  L F+++EKYPDE PL  + S   ++  D+  + + L  +A ENLGM MI+TLVT+
Sbjct: 47  TVQTTLKFTYSEKYPDEAPLYEIFSQENLEDNDVSDILKLLALQAEENLGMVMIFTLVTA 106

Query: 72  AKEWLSERYSQ----DAGIDNTGEEELEKDEVIVPHGEPVTVETFLAWRERFEAELALER 127
            +E L+E   Q            E+E E+ E  + HG PVT+E FL W+ +F+AEL   +
Sbjct: 107 VQEKLNEIVDQIKTRREEEKKQKEKEAEEAEKQLFHGTPVTIENFLNWKAKFDAELLEIK 166

Query: 128 AKLMPESALTAPKEKKLTGRQWFES 152
            K M E       + KL+G+Q FE+
Sbjct: 167 KKRMKEEEQAG--KNKLSGKQLFET 189

Protects DRG2 from proteolytic degradation.

Homo sapiens (taxid: 9606)

>sp|O94721|YCF9_SCHPO RWD domain-containing protein C1393.09c OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPCC1393.09c PE=4 SV=1

 Score = 60.1 bits (144), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 50/160 (31%), Positives = 83/160 (51%), Gaps = 23/160 (14%)

Query: 16  ALIFSH--TEKYPDEPPLLNVKSLRG---IQAGDLKILKEKLEQEASENLGMAMIYTLVT 70
           +LIF+   +E YPDE P + +        +   +++ LK+ + Q A E LGMAMI++L +
Sbjct: 46  SLIFTCQLSEAYPDEVPDVKITFSEPHPWLGEEEIERLKQVVAQNAEECLGMAMIFSLCS 105

Query: 71  SAKE-----WLSERYSQDAGIDNTGEEELEKDEVIVPHGEPVTVETFLAWRERFEA---- 121
            AKE      + +   +   I+    +E E++     HG PVTVE+F  W++ F+A    
Sbjct: 106 VAKEETNAILIEQSQRETQAIEERHRKEAEQENKKF-HGTPVTVESFTEWKKGFDAWRNE 164

Query: 122 ELALERAKLMPESALT--------APKEKKLTGRQWFESG 153
           +L LE+   + E+           A  EK++TGR+ FE+ 
Sbjct: 165 QLKLEQESKLKEALSAASSSNARKAILEKRMTGRELFENN 204

Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812)

>sp|Q03768|GIR2_YEAST Protein GIR2 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=GIR2 PE=1 SV=1

 Score = 55.1 bits (131), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 38/99 (38%), Positives = 51/99 (51%), Gaps = 9/99 (9%)

Query: 60  LGMAMIYTLVTSAKE----WLSERYSQDAGIDNTGEEELEKDEVIVPHGEPVTVETFLAW 115
           LGM M + L++S KE    W SE+ ++         +E EK E    HG  VT E++L W
Sbjct: 140 LGMQMCFALISSIKERCEQWYSEQLNKLEKQYELEAQEREKKEQAKFHGTKVTRESYLEW 199

Query: 116 RERFEAELAL-ERAKLMPESALTAPKEKKLTGRQWFESG 153
           R +F  EL L ER ++    A       KLTG+Q FE G
Sbjct: 200 RSKFRQELKLDERDQVRRMKAHHG----KLTGKQMFEQG 234

Involved in ribosomal function.

Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (taxid: 559292)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	212
255549664	253	rwd domain-containing protein, putative	0.910	0.762	0.823	4e-75
224128650	252	predicted protein [Populus trichocarpa]	0.905	0.761	0.828	5e-74
225442349	255	PREDICTED: RWD domain-containing protein	0.919	0.764	0.853	4e-73
297743115	246	unnamed protein product [Vitis vinifera]	0.919	0.792	0.853	4e-73
224059188	252	predicted protein [Populus trichocarpa]	0.915	0.769	0.79	3e-69
77999283	254	RWD domain-containing protein [Solanum t	0.900	0.751	0.718	5e-67
363807786	253	uncharacterized protein LOC100813322 [Gl	0.915	0.766	0.703	4e-66
449447836	255	PREDICTED: RWD domain-containing protein	0.938	0.780	0.719	6e-66
356526049	253	PREDICTED: RWD domain-containing protein	0.919	0.770	0.685	8e-66
15218023	252	ubiquitin-conjugating enzyme-like protei	0.905	0.761	0.737	1e-62

>gi|255549664|ref|XP_002515883.1| rwd domain-containing protein, putative [Ricinus communis] gi|223544788|gb|EEF46303.1| rwd domain-containing protein, putative [Ricinus communis]

 Score =  286 bits (732), Expect = 4e-75,   Method: Compositional matrix adjust.
 Identities = 163/198 (82%), Positives = 180/198 (90%), Gaps = 5/198 (2%)

Query: 13  VELALIFSHTEKYPDEPPLLNVKSLRGIQAGDLKILKEKLEQEASENLGMAMIYTLVTSA 72
           V+LALIFSHTEKYPDEPPLL+VKS+RGIQ GDLK+LKEKLE+EASENLGMAM+YTLVTSA
Sbjct: 59  VQLALIFSHTEKYPDEPPLLSVKSIRGIQVGDLKVLKEKLEEEASENLGMAMVYTLVTSA 118

Query: 73  KEWLSERYSQDAGIDNTGEEELEKDEVIVPHGEPVTVETFLAWRERFEAELALERAKLMP 132
           KEWLSE+Y QDA  +   +EE  KDEVIVPHGEPVT++TFLAWRERFEAELALERAKLMP
Sbjct: 119 KEWLSEKYGQDASNETIEDEEAAKDEVIVPHGEPVTIDTFLAWRERFEAELALERAKLMP 178

Query: 133 ESALTAPKEKKLTGRQWFESGRATAVSQKGAVTVNEVSDDEDDEDIDFDDDDFEDDEVDM 192
           ES LTAPKEKK++GRQWFESGRA     KGA TVNE SD+ED+E+IDFDDDDFEDDE DM
Sbjct: 179 ESVLTAPKEKKISGRQWFESGRA-----KGAATVNEESDEEDEEEIDFDDDDFEDDEEDM 233

Query: 193 LEHYLAEKSDSSTHSSRQ 210
           LEHYLAEKSDSSTHSSR+
Sbjct: 234 LEHYLAEKSDSSTHSSRR 251

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224128650|ref|XP_002329056.1| predicted protein [Populus trichocarpa] gi|222839727|gb|EEE78050.1| predicted protein [Populus trichocarpa]

 Score =  282 bits (722), Expect = 5e-74,   Method: Compositional matrix adjust.
 Identities = 164/198 (82%), Positives = 177/198 (89%), Gaps = 6/198 (3%)

Query: 13  VELALIFSHTEKYPDEPPLLNVKSLRGIQAGDLKILKEKLEQEASENLGMAMIYTLVTSA 72
           V+L L+FSHTEKYPDEPPLLNVKS+RGIQA DLK LKEKLEQEASENLGMAM+YTLVTSA
Sbjct: 59  VQLGLVFSHTEKYPDEPPLLNVKSIRGIQADDLKTLKEKLEQEASENLGMAMVYTLVTSA 118

Query: 73  KEWLSERYSQDAGIDNTGEEELEKDEVIVPHGEPVTVETFLAWRERFEAELALERAKLMP 132
           KEWLSERYSQDA  ++   EE  KD+VIVPHGEPVTVETFLAWRERFEAELALERAKLMP
Sbjct: 119 KEWLSERYSQDASNEDIENEEAAKDDVIVPHGEPVTVETFLAWRERFEAELALERAKLMP 178

Query: 133 ESALTAPKEKKLTGRQWFESGRATAVSQKGAVTVNEVSDDEDDEDIDFDDDDFEDDEVDM 192
           ESALTAPKEKKLTGR W+ESG+A     KGA+ VNE SD ED+E+IDFDDDDFEDDE DM
Sbjct: 179 ESALTAPKEKKLTGRLWYESGKA-----KGAIAVNEGSDVEDEEEIDFDDDDFEDDEEDM 233

Query: 193 LEHYLAEKSDSSTHSSRQ 210
           LEHYLAEKSDSS HSSR+
Sbjct: 234 LEHYLAEKSDSS-HSSRK 250

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225442349|ref|XP_002281163.1| PREDICTED: RWD domain-containing protein 1-like [Vitis vinifera]

 Score =  280 bits (715), Expect = 4e-73,   Method: Compositional matrix adjust.
 Identities = 169/198 (85%), Positives = 182/198 (91%), Gaps = 3/198 (1%)

Query: 13  VELALIFSHTEKYPDEPPLLNVKSLRGIQAGDLKILKEKLEQEASENLGMAMIYTLVTSA 72
           V+LALIFSHTEKYPDEPP LN KSLRGIQ  DL+ LKEKLEQEASENLGMAM+YTLVTSA
Sbjct: 59  VQLALIFSHTEKYPDEPPHLNFKSLRGIQYEDLRNLKEKLEQEASENLGMAMVYTLVTSA 118

Query: 73  KEWLSERYSQDAGIDNTGEEELEKDEVIVPHGEPVTVETFLAWRERFEAELALERAKLMP 132
           +EWLSER+ QDA ++N+ EEE EKD++IVPHGEPVTVETFLAWRERFEAELALERAKLMP
Sbjct: 119 QEWLSERFGQDANVENSEEEETEKDDIIVPHGEPVTVETFLAWRERFEAELALERAKLMP 178

Query: 133 ESALTAPKEKKLTGRQWFESGRATAVSQKGAVTVNEVSDDEDDEDIDFDDDDFEDDEVDM 192
           ESALTAPKEKKL+GRQWFESGRA A   KGAV VNE SD+EDDEDIDFDDDDFEDDE DM
Sbjct: 179 ESALTAPKEKKLSGRQWFESGRAVA---KGAVPVNEESDEEDDEDIDFDDDDFEDDEEDM 235

Query: 193 LEHYLAEKSDSSTHSSRQ 210
           LEHYLAEKSDSSTHSSR+
Sbjct: 236 LEHYLAEKSDSSTHSSRR 253

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297743115|emb|CBI35982.3| unnamed protein product [Vitis vinifera]

 Score =  280 bits (715), Expect = 4e-73,   Method: Compositional matrix adjust.
 Identities = 169/198 (85%), Positives = 182/198 (91%), Gaps = 3/198 (1%)

Query: 13  VELALIFSHTEKYPDEPPLLNVKSLRGIQAGDLKILKEKLEQEASENLGMAMIYTLVTSA 72
           V+LALIFSHTEKYPDEPP LN KSLRGIQ  DL+ LKEKLEQEASENLGMAM+YTLVTSA
Sbjct: 50  VQLALIFSHTEKYPDEPPHLNFKSLRGIQYEDLRNLKEKLEQEASENLGMAMVYTLVTSA 109

Query: 73  KEWLSERYSQDAGIDNTGEEELEKDEVIVPHGEPVTVETFLAWRERFEAELALERAKLMP 132
           +EWLSER+ QDA ++N+ EEE EKD++IVPHGEPVTVETFLAWRERFEAELALERAKLMP
Sbjct: 110 QEWLSERFGQDANVENSEEEETEKDDIIVPHGEPVTVETFLAWRERFEAELALERAKLMP 169

Query: 133 ESALTAPKEKKLTGRQWFESGRATAVSQKGAVTVNEVSDDEDDEDIDFDDDDFEDDEVDM 192
           ESALTAPKEKKL+GRQWFESGRA A   KGAV VNE SD+EDDEDIDFDDDDFEDDE DM
Sbjct: 170 ESALTAPKEKKLSGRQWFESGRAVA---KGAVPVNEESDEEDDEDIDFDDDDFEDDEEDM 226

Query: 193 LEHYLAEKSDSSTHSSRQ 210
           LEHYLAEKSDSSTHSSR+
Sbjct: 227 LEHYLAEKSDSSTHSSRR 244

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224059188|ref|XP_002299758.1| predicted protein [Populus trichocarpa] gi|222847016|gb|EEE84563.1| predicted protein [Populus trichocarpa]

 Score =  266 bits (681), Expect = 3e-69,   Method: Compositional matrix adjust.
 Identities = 158/200 (79%), Positives = 175/200 (87%), Gaps = 6/200 (3%)

Query: 13  VELALIFSHTEKYPDEPPLLNVKSLRGIQAGDLKILKEKLEQEASENLGMAMIYTLVTSA 72
           V+L L+FSHT KYPDEPPLLNVKS+RGIQA  LKILKEKLEQE+ ENLGMAM+YTLVTSA
Sbjct: 59  VQLGLVFSHTVKYPDEPPLLNVKSIRGIQADYLKILKEKLEQESFENLGMAMVYTLVTSA 118

Query: 73  KEWLSERYSQDAGIDNTGEEELEKDEVIVPHGEPVTVETFLAWRERFEAELALERAKLMP 132
           KEWLSERY QDA  ++   EE  KD+VIVPHGEPVTVETFLAWRE FEAELALERAKLMP
Sbjct: 119 KEWLSERYCQDAINEDIENEEAAKDDVIVPHGEPVTVETFLAWREIFEAELALERAKLMP 178

Query: 133 ESALTAPKEKKLTGRQWFESGRATAVSQKGAVTVNEVSDDEDDEDIDFDDDDFEDDEVDM 192
           ESALTAPKEKKLTGR W+ESG+A     KGAV VNE SD+ED+E+IDFDDDDFEDDE DM
Sbjct: 179 ESALTAPKEKKLTGRLWYESGKA-----KGAVAVNEGSDEEDEEEIDFDDDDFEDDEEDM 233

Query: 193 LEHYLAEKSDSSTHSSRQPS 212
           LEHYLA+KSDSS H+SR+ +
Sbjct: 234 LEHYLADKSDSS-HASRRAA 252

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|77999283|gb|ABB16988.1| RWD domain-containing protein [Solanum tuberosum]

 Score =  259 bits (662), Expect = 5e-67,   Method: Compositional matrix adjust.
 Identities = 143/199 (71%), Positives = 167/199 (83%), Gaps = 8/199 (4%)

Query: 11  FAVELALIFSHTEKYPDEPPLLNVKSLRGIQAGDLKILKEKLEQEASENLGMAMIYTLVT 70
           F + LALIFSHTEKYPDEPPLLNV SL+GI +GDLKILKEKLEQEA ENLGMAMIYTLV+
Sbjct: 62  FHIRLALIFSHTEKYPDEPPLLNVSSLKGIHSGDLKILKEKLEQEAVENLGMAMIYTLVS 121

Query: 71  SAKEWLSERYSQ--DAGIDNTGEEELEKDEVIVPHGEPVTVETFLAWRERFEAELALERA 128
           SAK+WLSER++Q  D G+++   +E +K+EVIVPHGE VTVETFLAWRERFEAELALERA
Sbjct: 122 SAKDWLSERFAQENDEGVED---DEAKKEEVIVPHGEAVTVETFLAWRERFEAELALERA 178

Query: 129 KLMPESALTAPKEKKLTGRQWFESGRATAVSQKGAVTVNEVSDDEDDEDIDFDDDDFEDD 188
           KLMP++AL+  KEKKLTGRQWFESGRA   S K A+   E SD++ D+    DDD  +D+
Sbjct: 179 KLMPDAALSVSKEKKLTGRQWFESGRA---SGKAAIATAEESDEDVDDIDFDDDDFEDDE 235

Query: 189 EVDMLEHYLAEKSDSSTHS 207
           E DMLEHYLAEK+DSS+HS
Sbjct: 236 EEDMLEHYLAEKTDSSSHS 254

Source: Solanum tuberosum

Species: Solanum tuberosum

Genus: Solanum

Family: Solanaceae

Order: Solanales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|363807786|ref|NP_001241922.1| uncharacterized protein LOC100813322 [Glycine max] gi|255641328|gb|ACU20941.1| unknown [Glycine max]

 Score =  256 bits (654), Expect = 4e-66,   Method: Compositional matrix adjust.
 Identities = 140/199 (70%), Positives = 163/199 (81%), Gaps = 5/199 (2%)

Query: 14  ELALIFSHTEKYPDEPPLLNVKSLRGIQAGDLKILKEKLEQEASENLGMAMIYTLVTSAK 73
           +LALIFSHTE YPDEPPLLN+KSL+GI A DL+ILKEKL+QEASENLGMAMIYTLVTSAK
Sbjct: 60  QLALIFSHTETYPDEPPLLNLKSLQGISAEDLRILKEKLQQEASENLGMAMIYTLVTSAK 119

Query: 74  EWLSERYSQDAGIDNTGEEELEKDEVIVPHGEPVTVETFLAWRERFEAELALERAKLMPE 133
           EWL++R+SQD  + +T  EE  KD+V++PHGEPVTVETFLAWRERFEAELALE AKLMPE
Sbjct: 120 EWLADRFSQD-DVGSTEAEEAAKDDVVIPHGEPVTVETFLAWRERFEAELALELAKLMPE 178

Query: 134 SALTAPKEKKLTGRQWFESGRATAVSQKGAVTVNEVSDDEDDEDIDFDDDDFEDDEVDML 193
           S LTAPKEKKL+GRQWFESGR   V    A    E   +++++    +DD  +D+E DML
Sbjct: 179 SVLTAPKEKKLSGRQWFESGRVKGV----AAVAEESDVEDEEDIDFDEDDFEDDEEEDML 234

Query: 194 EHYLAEKSDSSTHSSRQPS 212
           EHYLAEKSD STHSS + S
Sbjct: 235 EHYLAEKSDLSTHSSMRAS 253

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449447836|ref|XP_004141673.1| PREDICTED: RWD domain-containing protein 1-like [Cucumis sativus] gi|449480599|ref|XP_004155941.1| PREDICTED: RWD domain-containing protein 1-like [Cucumis sativus]

 Score =  256 bits (653), Expect = 6e-66,   Method: Compositional matrix adjust.
 Identities = 146/203 (71%), Positives = 172/203 (84%), Gaps = 4/203 (1%)

Query: 10  LFAVELALIFSHTEKYPDEPPLLNVKSLRGIQAGDLKILKEKLEQEASENLGMAMIYTLV 69
           +  V+L LIFSHTEKYPDEPPLLNVKS+RGI   DLKILKEKL+QEASENLGMAM+YTLV
Sbjct: 56  IMPVQLGLIFSHTEKYPDEPPLLNVKSIRGIPGEDLKILKEKLQQEASENLGMAMVYTLV 115

Query: 70  TSAKEWLSERYSQDAGIDNTGEEELEKDEVIVPHGEPVTVETFLAWRERFEAELALERAK 129
           TS+KEWLSER+ Q++ ++    EE  K++VIVPHGEPVT++TFLAWRERFEAE+ALERAK
Sbjct: 116 TSSKEWLSERFGQESSLEIAEAEERAKEDVIVPHGEPVTLDTFLAWRERFEAEIALERAK 175

Query: 130 LMPESALTAPKEKKLTGRQWFESGRATAVSQKGAVTVNEVS-DDEDDEDIDFDDDDFEDD 188
           +MPESALTAPKEKKL GRQWFESGRA   S KGA  V E S +D++++    +DD  +DD
Sbjct: 176 IMPESALTAPKEKKLAGRQWFESGRA---SGKGAAPVTEGSDEDDEEDIDFDEDDFEDDD 232

Query: 189 EVDMLEHYLAEKSDSSTHSSRQP 211
           E DMLEHYLAEKSDSS+HSSR+P
Sbjct: 233 EEDMLEHYLAEKSDSSSHSSRRP 255

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356526049|ref|XP_003531632.1| PREDICTED: RWD domain-containing protein 1-like [Glycine max]

 Score =  255 bits (651), Expect = 8e-66,   Method: Compositional matrix adjust.
 Identities = 137/200 (68%), Positives = 163/200 (81%), Gaps = 5/200 (2%)

Query: 13  VELALIFSHTEKYPDEPPLLNVKSLRGIQAGDLKILKEKLEQEASENLGMAMIYTLVTSA 72
            +LALIFSHTE YPDEPPLLN+KSL+G+   DL+ILKE L+QEASENLGMAMIYTLVTSA
Sbjct: 59  AQLALIFSHTETYPDEPPLLNLKSLQGMSTEDLRILKENLQQEASENLGMAMIYTLVTSA 118

Query: 73  KEWLSERYSQDAGIDNTGEEELEKDEVIVPHGEPVTVETFLAWRERFEAELALERAKLMP 132
           KEWL++R+ QD  + +T  EE  K++V++PHGEPVTVETFLAWRERFEAELALERAKLMP
Sbjct: 119 KEWLADRFCQD-DVGSTEAEEAAKEDVVIPHGEPVTVETFLAWRERFEAELALERAKLMP 177

Query: 133 ESALTAPKEKKLTGRQWFESGRATAVSQKGAVTVNEVSDDEDDEDIDFDDDDFEDDEVDM 192
           ES L+APKEKKL+GRQWFESGRA  V    A    E   +++++    +DD  +D+E DM
Sbjct: 178 ESVLSAPKEKKLSGRQWFESGRAKGV----AAVAEESEGEDEEDIDFDEDDFEDDEEEDM 233

Query: 193 LEHYLAEKSDSSTHSSRQPS 212
           LEHYLAEKSDSSTHSS + S
Sbjct: 234 LEHYLAEKSDSSTHSSMRAS 253

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|15218023|ref|NP_175584.1| ubiquitin-conjugating enzyme-like protein [Arabidopsis thaliana] gi|12321663|gb|AAG50865.1|AC025294_3 unknown protein [Arabidopsis thaliana] gi|19698889|gb|AAL91180.1| unknown protein [Arabidopsis thaliana] gi|23198350|gb|AAN15702.1| unknown protein [Arabidopsis thaliana] gi|332194587|gb|AEE32708.1| ubiquitin-conjugating enzyme-like protein [Arabidopsis thaliana]

 Score =  244 bits (624), Expect = 1e-62,   Method: Compositional matrix adjust.
 Identities = 146/198 (73%), Positives = 166/198 (83%), Gaps = 6/198 (3%)

Query: 13  VELALIFSHTEKYPDEPPLLNVKSLRGIQAGDLKILKEKLEQEASENLGMAMIYTLVTSA 72
           V+LAL+FSHTE YPDE PLL+VKS+RGI   DL ILKEKLEQEASENLGMAMIYTLV+SA
Sbjct: 59  VQLALVFSHTENYPDEAPLLDVKSIRGIHVSDLTILKEKLEQEASENLGMAMIYTLVSSA 118

Query: 73  KEWLSERYSQDAGIDNTGEEELEKDEVIVPHGEPVTVETFLAWRERFEAELALERAKLMP 132
           K+WLSE Y QD   +    E  ++DEVIVPHGEPVT+ETFLAWRER+EAELALERAKLMP
Sbjct: 119 KDWLSEHYGQDDAAEFAEVEAAKEDEVIVPHGEPVTLETFLAWRERYEAELALERAKLMP 178

Query: 133 ESALTAPKEKKLTGRQWFESGRATAVSQKGAVTV-NEVSDDEDDEDIDFDDDDFEDDEVD 191
           ESALTAPKEKKLTGRQWFESGR      +G V + +E  ++ED+EDIDF+D+DFEDDE D
Sbjct: 179 ESALTAPKEKKLTGRQWFESGRG-----RGTVVIADEEDEEEDEEDIDFEDEDFEDDEED 233

Query: 192 MLEHYLAEKSDSSTHSSR 209
           MLEHYLAEKSDSS   +R
Sbjct: 234 MLEHYLAEKSDSSAPPTR 251

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	212
TAIR|locus:2017532	252	AT1G51730 [Arabidopsis thalian	0.905	0.761	0.575	1.3e-50
ZFIN|ZDB-GENE-040718-270	240	rwdd1 "RWD domain containing 1	0.650	0.575	0.354	3.3e-15
MGI|MGI:1913771	243	Rwdd1 "RWD domain containing 1	0.650	0.567	0.340	1.8e-14
UNIPROTKB|Q9H446	243	RWDD1 "RWD domain-containing p	0.650	0.567	0.340	2.3e-14
POMBASE|SPCC1393.09c	215	SPCC1393.09c "RWD domain prote	0.452	0.446	0.373	2.7e-05
UNIPROTKB|G4MRT5	230	MGG_04566 "RWD domain-containi	0.650	0.6	0.273	4.9e-05
WB|WBGene00012037	240	T26E3.4 [Caenorhabditis elegan	0.636	0.562	0.287	5.5e-05

TAIR|locus:2017532 AT1G51730 [Arabidopsis thaliana (taxid:3702)]

 Score = 526 (190.2 bits), Expect = 1.3e-50, P = 1.3e-50
 Identities = 114/198 (57%), Positives = 128/198 (64%)

Query:    13 VELALIFSHTEKYPDEPPLLNVKSLRGIQAGDLKILKEKLEQEASENLGMAMIYTLVTSA 72
             V+LAL+FSHTE YPDE PLL+VKS+RGI   DL ILKEKLEQEASENLGMAMIYTLV+SA
Sbjct:    59 VQLALVFSHTENYPDEAPLLDVKSIRGIHVSDLTILKEKLEQEASENLGMAMIYTLVSSA 118

Query:    73 KEWLSERYSQDAGIDNTGEEELEKDEVIVPHGEPVTVETFXXXXXXXXXXXXXXXXXXMP 132
             K+WLSE Y QD   +    E  ++DEVIVPHGEPVT+ETF                  MP
Sbjct:   119 KDWLSEHYGQDDAAEFAEVEAAKEDEVIVPHGEPVTLETFLAWRERYEAELALERAKLMP 178

Query:   133 ESALTAPKEKKLTGRQWFESGRATAVSQKGAVTV-NEVSXXXXXXXXXXXXXXXXXXXXX 191
             ESALTAPKEKKLTGRQWFESGR      +G V + +E                       
Sbjct:   179 ESALTAPKEKKLTGRQWFESGRG-----RGTVVIADEEDEEEDEEDIDFEDEDFEDDEED 233

Query:   192 MLEHYLAEKSDSSTHSSR 209
             MLEHYLAEKSDSS   +R
Sbjct:   234 MLEHYLAEKSDSSAPPTR 251

GO:0005737 "cytoplasm" evidence=ISM

GO:0008150 "biological_process" evidence=ND

ZFIN|ZDB-GENE-040718-270 rwdd1 "RWD domain containing 1" [Danio rerio (taxid:7955)]

 Score = 192 (72.6 bits), Expect = 3.3e-15, P = 3.3e-15
 Identities = 51/144 (35%), Positives = 73/144 (50%)

Query:    13 VELALIFSHTEKYPDEPPLLNVKSLRGIQAGDLKILKEKLEQEASENLGMAMIYTLVTSA 72
             +EL L F++ EKYPDEPPL  + S   ++  D + +   L+Q+A ENLGM MI+TLVT+ 
Sbjct:    48 LELTLKFTYVEKYPDEPPLWEIFSQENLEDSDAEEILTLLKQQAEENLGMVMIFTLVTAV 107

Query:    73 KEWLSERYSQDAGI----DNTGEEELEKDEVIVPHGEPVTVETFXXXXXXXXXXXXXXXX 128
             +E L+E   Q            ++E E+ E     G  VT+ETF                
Sbjct:   108 QEKLNEIIDQIKSRREEEKQRKQKEAEEAEKRAFQGTVVTIETFLSWKAKFEAEMIELKK 167

Query:   129 XXMPESALTAPKEKKLTGRQWFES 152
                 E   +   +KKLTG+Q FE+
Sbjct:   168 KRQKEEEQSG--KKKLTGKQLFET 189

GO:0005575 "cellular_component" evidence=ND

MGI|MGI:1913771 Rwdd1 "RWD domain containing 1" [Mus musculus (taxid:10090)]

 Score = 185 (70.2 bits), Expect = 1.8e-14, P = 1.8e-14
 Identities = 49/144 (34%), Positives = 72/144 (50%)

Query:    13 VELALIFSHTEKYPDEPPLLNVKSLRGIQAGDLKILKEKLEQEASENLGMAMIYTLVTSA 72
             V+  L F+++EKYPDE PL  + S   ++  D+  + + L  +A ENLGM MI+TLVT+ 
Sbjct:    48 VQTTLKFTYSEKYPDETPLYEIFSQENLEDNDVSDILKLLALQAEENLGMVMIFTLVTAV 107

Query:    73 KEWLSERYSQ----DAGIDNTGEEELEKDEVIVPHGEPVTVETFXXXXXXXXXXXXXXXX 128
             +E L+E   Q            E+E E+ E  + HG PVT+E F                
Sbjct:   108 QEKLNEIVDQIKTRREEEKKQKEKEAEEAEKKLFHGTPVTIENFLSWKAKFDAELLEIKK 167

Query:   129 XXMPESALTAPKEKKLTGRQWFES 152
               M E       + KL+G+Q FE+
Sbjct:   168 KRMKEEEQAG--KNKLSGKQLFET 189

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

UNIPROTKB|Q9H446 RWDD1 "RWD domain-containing protein 1" [Homo sapiens (taxid:9606)]

 Score = 184 (69.8 bits), Expect = 2.3e-14, P = 2.3e-14
 Identities = 49/144 (34%), Positives = 72/144 (50%)

Query:    13 VELALIFSHTEKYPDEPPLLNVKSLRGIQAGDLKILKEKLEQEASENLGMAMIYTLVTSA 72
             V+  L F+++EKYPDE PL  + S   ++  D+  + + L  +A ENLGM MI+TLVT+ 
Sbjct:    48 VQTTLKFTYSEKYPDEAPLYEIFSQENLEDNDVSDILKLLALQAEENLGMVMIFTLVTAV 107

Query:    73 KEWLSERYSQ----DAGIDNTGEEELEKDEVIVPHGEPVTVETFXXXXXXXXXXXXXXXX 128
             +E L+E   Q            E+E E+ E  + HG PVT+E F                
Sbjct:   108 QEKLNEIVDQIKTRREEEKKQKEKEAEEAEKQLFHGTPVTIENFLNWKAKFDAELLEIKK 167

Query:   129 XXMPESALTAPKEKKLTGRQWFES 152
               M E       + KL+G+Q FE+
Sbjct:   168 KRMKEEEQAG--KNKLSGKQLFET 189

GO:0005515 "protein binding" evidence=IPI

POMBASE|SPCC1393.09c SPCC1393.09c "RWD domain protein, implicated in translation" [Schizosaccharomyces pombe (taxid:4896)]

 Score = 113 (44.8 bits), Expect = 2.7e-05, P = 2.7e-05
 Identities = 40/107 (37%), Positives = 60/107 (56%)

Query:    16 ALIFSH--TEKYPDEPPLLNVK-SLRGIQAGDLKI--LKEKLEQEASENLGMAMIYTLVT 70
             +LIF+   +E YPDE P + +  S      G+ +I  LK+ + Q A E LGMAMI++L +
Sbjct:    46 SLIFTCQLSEAYPDEVPDVKITFSEPHPWLGEEEIERLKQVVAQNAEECLGMAMIFSLCS 105

Query:    71 SAKEW----LSERYSQDA-GIDNTGEEELEKDEVIVPHGEPVTVETF 112
              AKE     L E+  ++   I+    +E E++     HG PVTVE+F
Sbjct:   106 VAKEETNAILIEQSQRETQAIEERHRKEAEQENKKF-HGTPVTVESF 151

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=IDA

GO:0005737 "cytoplasm" evidence=ISO

GO:0005829 "cytosol" evidence=IDA

GO:0008150 "biological_process" evidence=ND

UNIPROTKB|G4MRT5 MGG_04566 "RWD domain-containing protein" [Magnaporthe oryzae 70-15 (taxid:242507)]

 Score = 112 (44.5 bits), Expect = 4.9e-05, P = 4.9e-05
 Identities = 43/157 (27%), Positives = 69/157 (43%)

Query:    15 LALIFSHTEKYPDEPPLLNVKSLRGIQAG--------DLKILKEKLEQEASENLGMAMIY 66
             + L   + E YPD  P L++ + +   +         D + L   +E+  +ENLGMAM++
Sbjct:    49 MLLTVQYPEAYPDVAPRLDLAAPQNSTSSHPYFNVSDDKETLLAGVEETINENLGMAMVF 108

Query:    67 TLVTSAKEWLSERYSQDAGIDNTGEEE-----LEKDEVIVPHGEPVTVETFXXXXXXXXX 121
             T+V++ KE  +E+   D       E+E      E++E    HGEPV  E+F         
Sbjct:   109 TVVSALKE-AAEQLVVDRREAKAREQEEAALAAEREENKKFHGEPVNPESFMRWRAGFLK 167

Query:   122 XXXXXXXXXMPESALTAPKEK-----KLTGRQWFESG 153
                        E      K+K     KLTG+Q ++ G
Sbjct:   168 EMEEQRLREEEERLAELKKQKVKEPVKLTGKQLWQQG 204

GO:0005575 "cellular_component" evidence=ND

WB|WBGene00012037 T26E3.4 [Caenorhabditis elegans (taxid:6239)]

 Score = 112 (44.5 bits), Expect = 5.5e-05, P = 5.5e-05
 Identities = 42/146 (28%), Positives = 63/146 (43%)

Query:    11 FAVELALIFSHTEKYPDEPPLLNVKSLRGIQAGDLKILK--EKLEQEASENLGMAMIYTL 68
             F VEL + F  TE YPDE P++ +  +      + +I +  +KL   A ENLGM M++ +
Sbjct:    52 FDVELGIEF--TENYPDEIPIITLNGIEDAFTAE-RIAESIDKLRSVAEENLGMVMVFAI 108

Query:    69 VTSAKEWLSERYS-QDAGIDNTGEEELEKDEVIVP---HGEPVTVETFXXXXXXXXXXXX 124
             V++ ++ + E    +    +   E E EK E        G  VT +TF            
Sbjct:   109 VSALQDEIGELVDVKKRAKEEKVEIEKEKKEAESRKKFEGTVVTPDTFRAWKDRFDEERK 168

Query:   125 XXXXXXMPESALTAPKEKKLTGRQWF 150
                     E    A    +LTGRQ F
Sbjct:   169 AEIDAA--EKERLASLAGRLTGRQLF 192


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.310   0.127   0.351    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      212       173   0.00097  108 3  11 23  0.50    32
                                                     31  0.48    34


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  7
  No. of states in DFA:  584 (62 KB)
  Total size of DFA:  148 KB (2090 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  16.24u 0.10s 16.34t   Elapsed:  00:00:00
  Total cpu time:  16.24u 0.10s 16.34t   Elapsed:  00:00:00
  Start:  Fri May 10 06:56:03 2013   End:  Fri May 10 06:56:03 2013

GO:0040010 "positive regulation of growth rate" evidence=IMP

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: eugene3.00970039 hypothetical protein (252 aa) (Populus trichocarpa)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	212
pfam05773	113	pfam05773, RWD, RWD domain	2e-14
smart00591	107	smart00591, RWD, domain in RING finger and WD repe	3e-11

>gnl|CDD|218742 pfam05773, RWD, RWD domain

 Score = 66.2 bits (162), Expect = 2e-14
 Identities = 26/64 (40%), Positives = 38/64 (59%)

Query: 13  VELALIFSHTEKYPDEPPLLNVKSLRGIQAGDLKILKEKLEQEASENLGMAMIYTLVTSA 72
           V L L F+  E YPDEPP +++ S   ++  D   L ++LE+ A ENLG  MI+ L+   
Sbjct: 50  VSLVLTFTLPEDYPDEPPKISLSSPWLLRDQDKLQLLKELEELAEENLGEVMIFELIEWL 109

Query: 73  KEWL 76
           +E L
Sbjct: 110 QENL 113

This domain was identified in WD40 repeat proteins and Ring finger domain proteins. The function of this domain is unknown. GCN2 is the alpha-subunit of the only translation initiation factor (eIF2 alpha) kinase that appears in all eukaryotes. Its function requires an interaction with GCN1 via the domain at its N-terminus, which is termed the RWD domain after three major RWD-containing proteins: RING finger-containing proteins, WD-repeat-containing proteins, and yeast DEAD (DEXD)-like helicases. The structure forms an alpha + beta sandwich fold consisting of two layers: a four-stranded antiparallel beta-sheet, and three side-by-side alpha-helices. Length = 113

>gnl|CDD|214735 smart00591, RWD, domain in RING finger and WD repeat containing proteins and DEXDc-like helicases subfamily related to the UBCc domain

 Score = 57.8 bits (140), Expect = 3e-11
 Identities = 28/66 (42%), Positives = 38/66 (57%)

Query: 13  VELALIFSHTEKYPDEPPLLNVKSLRGIQAGDLKILKEKLEQEASENLGMAMIYTLVTSA 72
           V L L     E YPDE P +++ +  G+    L  L +KLE+ A ENLG  MI+ LV   
Sbjct: 41  VSLTLQVKLPENYPDEAPPISLLNSEGLSDEQLAELLKKLEEIAEENLGEVMIFELVEKL 100

Query: 73  KEWLSE 78
           +E+LSE
Sbjct: 101 QEFLSE 106

Length = 107

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	212
KOG4018	215	consensus Uncharacterized conserved protein, conta	100.0
smart00591	107	RWD domain in RING finger and WD repeat containing	99.56
PF05773	113	RWD: RWD domain; InterPro: IPR006575 The RWD eukar	99.45
KOG4445	368	consensus Uncharacterized conserved protein, conta	99.22
KOG1763	343	consensus Uncharacterized conserved protein, conta	98.65
KOG1035	1351	consensus eIF-2alpha kinase GCN2 [Translation, rib	97.74
COG5252	299	Uncharacterized conserved protein, contains CCCH-t	96.18
KOG0309	1081	consensus Conserved WD40 repeat-containing protein	93.81
KOG1814	445	consensus Predicted E3 ubiquitin ligase [Posttrans	89.89
KOG0419	152	consensus Ubiquitin-protein ligase [Posttranslatio	88.51
PF00179	140	UQ_con: Ubiquitin-conjugating enzyme; InterPro: IP	87.2
cd00195	141	UBCc Ubiquitin-conjugating enzyme E2, catalytic (U	85.41
smart00212	145	UBCc Ubiquitin-conjugating enzyme E2, catalytic do	84.9
PTZ00390	152	ubiquitin-conjugating enzyme; Provisional	84.65
PF08694	161	UFC1: Ubiquitin-fold modifier-conjugating enzyme 1	84.48
PLN00172	147	ubiquitin conjugating enzyme; Provisional	83.92
COG5078	153	Ubiquitin-protein ligase [Posttranslational modifi	83.33

>KOG4018 consensus Uncharacterized conserved protein, contains RWD domain [Function unknown]

Probab=100.00  E-value=1.9e-36  Score=257.04  Aligned_cols=147  Identities=43%  Similarity=0.593  Sum_probs=129.1

Q ss_pred             CCce-EEEEEEEeCCCCCCCCCceEEecCCCCCHHhHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhhccccc--
Q 028191           10 LFAV-ELALIFSHTEKYPDEPPLLNVKSLRGIQAGDLKILKEKLEQEASENLGMAMIYTLVTSAKEWLSERYSQDAGI--   86 (212)
Q Consensus        10 ~~p~-~l~L~f~~p~~YP~e~P~i~i~~~~gL~~~~l~~L~~~L~~~aeenlGm~MIFtLve~lqE~L~e~~~~~~~~--   86 (212)
                      +.|. ++.|.|++|++||+++|+|.+..+.|+.+..+..|+..|+.+|++||||+|||+||+++|+||++++++....  
T Consensus        45 d~~~~~~~l~~s~tEnYPDe~Pli~~~~~~~~~~~~i~~i~~~l~~~aeenLGmaMiftLvss~ke~l~e~~~q~~~~e~  124 (215)
T KOG4018|consen   45 DEPKGSFILVFSLTENYPDEAPLIEAFENENLEDAEIEGILEKLQQEAEENLGMAMIFTLVSSAKEELNEIVEQQKAAEQ  124 (215)
T ss_pred             CCccccEEEEEEccCCCCCCCcceeccccccccHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4555 8999999999999999999999999999999999999999999999999999999999999999999987665  


Q ss_pred             CCccchhhhhhcccCCCCCcccHHHHHHHHHHHHHHHHHHHHhcCccccccCCCCCCcchhHHhhcCcccccc
Q 028191           87 DNTGEEELEKDEVIVPHGEPVTVETFLAWRERFEAELALERAKLMPESALTAPKEKKLTGRQWFESGRATAVS  159 (212)
Q Consensus        87 ~e~~~~e~e~ee~~~~~GTpVT~EsF~~Wk~kf~~E~~~~k~k~~~e~~~~~~~~~kLTGRqlFe~~~~l~~~  159 (212)
                      .+.+.++++++++++|||||||+++|.+||.+|+++++..+++.++.   .+...+++||||+|++|+.+..+
T Consensus       125 ~e~~~~~~ee~e~~kfhgt~VT~esfl~Wk~~fe~el~~~~~k~~~~---~~~~~~k~tgRQ~f~~d~~~~~~  194 (215)
T KOG4018|consen  125 REQEAREAEEEERKKFHGTPVTLESFLEWKLKFEEELLQIKAKVKKR---LQALAKKLTGRQLFETDHKGDRS  194 (215)
T ss_pred             HHHHHHHHHHHhhccccCCceehhhhHHHHHhhhhhhhhhhhhhhhH---HHHHhhhHHHHHHHHhcccCChh
Confidence            22346677778899999999999999999999999996666665432   45667899999999999998544

>smart00591 RWD domain in RING finger and WD repeat containing proteins and DEXDc-like helicases subfamily related to the UBCc domain

Probab=99.56  E-value=1.4e-14  Score=109.02  Aligned_cols=68  Identities=41%  Similarity=0.589  Sum_probs=64.4

Q ss_pred             CceEEEEEEEeCCCCCCCCCceEEecCCCCCHHhHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHH
Q 028191           11 FAVELALIFSHTEKYPDEPPLLNVKSLRGIQAGDLKILKEKLEQEASENLGMAMIYTLVTSAKEWLSE   78 (212)
Q Consensus        11 ~p~~l~L~f~~p~~YP~e~P~i~i~~~~gL~~~~l~~L~~~L~~~aeenlGm~MIFtLve~lqE~L~e   78 (212)
                      ..+++.|+|.+|++||..+|.|.+.+..+|+...+..|.+.|...+++++|++|||++++++|+||.+
T Consensus        39 ~~~~~~l~~~~p~~YP~~~P~i~~~~~~~l~~~~~~~l~~~l~~~~~e~~g~~~if~~v~~~~e~l~~  106 (107)
T smart00591       39 QYVSLTLQVKLPENYPDEAPPISLLNSEGLSDEQLAELLKKLEEIAEENLGEVMIFELVEKLQEFLSE  106 (107)
T ss_pred             cceEEEEEEECCCCCCCCCCCeEEECCCCCCHHHHHHHHHHHHHHHHHhCCCEEhhHHHHHHHHHHhc
Confidence            45679999999999999999999998889999999999999999999999999999999999999975

>PF05773 RWD: RWD domain; InterPro: IPR006575 The RWD eukaryotic domain is found in RING finger (IPR001841 from INTERPRO) and WD repeat (IPR001680 from INTERPRO) containing proteins and DEXDc-like helicase (IPR001410 from INTERPRO) subfamily related to the ubiquitin-conjugating enzymes domain (IPR000608 from INTERPRO)

Probab=99.45  E-value=2.3e-13  Score=102.90  Aligned_cols=70  Identities=26%  Similarity=0.413  Sum_probs=60.5

Q ss_pred             cccCCceEEEEEEEeCCCCCCCCCceEEecCCCCCHHhHHHHHHHHHHHHHHhc-CChHHHHHHHHHHHHH
Q 028191            7 LKLLFAVELALIFSHTEKYPDEPPLLNVKSLRGIQAGDLKILKEKLEQEASENL-GMAMIYTLVTSAKEWL   76 (212)
Q Consensus         7 ~~~~~p~~l~L~f~~p~~YP~e~P~i~i~~~~gL~~~~l~~L~~~L~~~aeenl-Gm~MIFtLve~lqE~L   76 (212)
                      ......+.+.|+|++|++||..+|.|.|....++....+..|.+.|...++++. |++|||+|++|+|++|
T Consensus        43 ~~~~~~~~~~l~~~~p~~YP~~~P~i~l~~~~~~~~~~~~~l~~~l~~~~~~~~~G~~~i~~ii~~~qe~~  113 (113)
T PF05773_consen   43 FESSSFPSVTLHFTLPPGYPESPPKISLESPKNSRNEQIEKLNKELEQIAEENRQGEPCIFQIIEWLQENL  113 (113)
T ss_dssp             CTTTTSEEEEEEEEE-SSTTSS--EEEEEEESSSHCHHHHHHHHHHHHHHHHSTTTS-CHHHHHHHHHHHH
T ss_pred             cccccceeEEEEEeCCCcCCCcCCEEEEEcCCCCCHHHHHHHHHHHHHHHHHhCCCcCHHHHHHHHHHhhC
Confidence            345667899999999999999999999998887777899999999999999999 9999999999999986

; GO: 0005515 protein binding; PDB: 2EBM_A 2EBK_A 2DAX_A 2DAW_A 2DAY_A 2DMF_A 1UKX_A 2YZ0_A.

>KOG4445 consensus Uncharacterized conserved protein, contains RWD domain [Function unknown]

Probab=99.22  E-value=2.5e-11  Score=108.59  Aligned_cols=69  Identities=25%  Similarity=0.494  Sum_probs=66.4

Q ss_pred             CceEEEEEEEeCCCCCCCCCceEEecCCCCCHHhHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHH
Q 028191           11 FAVELALIFSHTEKYPDEPPLLNVKSLRGIQAGDLKILKEKLEQEASENLGMAMIYTLVTSAKEWLSER   79 (212)
Q Consensus        11 ~p~~l~L~f~~p~~YP~e~P~i~i~~~~gL~~~~l~~L~~~L~~~aeenlGm~MIFtLve~lqE~L~e~   79 (212)
                      ..++|+|.++.|+.||.+.|.|+|.+++||.+..+..|+..+++.+++|+||||||.|++.++|+|.+.
T Consensus        43 qyvcvtl~m~vs~gYP~esPtvtl~nPRGl~d~~~~~i~~~~~~iikq~~g~pii~~lie~~~e~LT~n  111 (368)
T KOG4445|consen   43 QYVCVTLEMTVSEGYPAESPTVTLSNPRGLGDPEFREIQRQIQEIIKQNSGMPIICQLIEHCSEFLTEN  111 (368)
T ss_pred             eeEEEEEEEecCCCCCCcCCceEecCCCCCCcHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHcccC
Confidence            348999999999999999999999999999999999999999999999999999999999999999876

>KOG1763 consensus Uncharacterized conserved protein, contains CCCH-type Zn-finger [General function prediction only]

Probab=98.65  E-value=1.8e-08  Score=90.09  Aligned_cols=64  Identities=28%  Similarity=0.328  Sum_probs=46.2

Q ss_pred             CCCCcccHHHHHHHHHHHHHHHHHHHHhcCccccccCCCCCCcchhHHhhcCcccccccCCCcccc
Q 028191          102 PHGEPVTVETFLAWRERFEAELALERAKLMPESALTAPKEKKLTGRQWFESGRATAVSQKGAVTVN  167 (212)
Q Consensus       102 ~~GTpVT~EsF~~Wk~kf~~E~~~~k~k~~~e~~~~~~~~~kLTGRqlFe~~~~l~~~~~~~~~~~  167 (212)
                      ++-||||.++|.+|+.+..+|.....++.... ++..++.. ||||+||++++.||.++++.+..-
T Consensus       224 ~nlT~~T~e~F~~WKk~k~~er~~k~~~~~~~-~k~~gk~~-~sGRElF~~~~dl~~dd~~e~~d~  287 (343)
T KOG1763|consen  224 PNLTPLTEETFKAWKKRKIRERKEKLAAEKAE-RKKVGKSN-MSGRELFESNADLVNDDDEEAGDL  287 (343)
T ss_pred             CCCccccHHHHHHHHHhhHHHHHHHHHHHHHH-hhhhccCC-CchHHHHhhchhhccCchhhccch
Confidence            46899999999999999877776654443322 12223333 999999999999999885554433

>KOG1035 consensus eIF-2alpha kinase GCN2 [Translation, ribosomal structure and biogenesis]

Probab=97.74  E-value=9e-06  Score=84.13  Aligned_cols=72  Identities=24%  Similarity=0.379  Sum_probs=67.3

Q ss_pred             ceEEEEEEEeCCCCCCCCCceEEecCCCCCHHhHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhhcc
Q 028191           12 AVELALIFSHTEKYPDEPPLLNVKSLRGIQAGDLKILKEKLEQEASENLGMAMIYTLVTSAKEWLSERYSQD   83 (212)
Q Consensus        12 p~~l~L~f~~p~~YP~e~P~i~i~~~~gL~~~~l~~L~~~L~~~aeenlGm~MIFtLve~lqE~L~e~~~~~   83 (212)
                      .+++.|+|++++.||...|.+.+...+|+.+.++..|...|...++...|+.|||.|...+|++|.+....+
T Consensus        49 ~~~~~lh~~~~~~yp~~kp~i~lk~~~~~~d~~i~~L~~~l~~~~~~~~G~~~i~eLa~~vqefl~~~~~~~  120 (1351)
T KOG1035|consen   49 KLSGRLHVKCKRKYPYSKPEIKLKDHQGVSDEDIELLSNELTALAKTLRGEVMIAELASIVQEFLKDHQDRP  120 (1351)
T ss_pred             HHhhHhhhhhccccCCCCccccccccccchHHHHHHHHHHHHHhhccccccEEeeeHhhhhHHHHhccCCCC
Confidence            457889999999999999999999999999999999999999999999999999999999999998876544

>COG5252 Uncharacterized conserved protein, contains CCCH-type Zn-finger protein [General function prediction only]

Probab=96.18  E-value=0.0024  Score=56.30  Aligned_cols=61  Identities=21%  Similarity=0.242  Sum_probs=37.5

Q ss_pred             CCCCcccHHHHHHHHHHHHHHHHHHHHhcCccccccCCCCCCcchh-HHhhcCcccccccCCCc
Q 028191          102 PHGEPVTVETFLAWRERFEAELALERAKLMPESALTAPKEKKLTGR-QWFESGRATAVSQKGAV  164 (212)
Q Consensus       102 ~~GTpVT~EsF~~Wk~kf~~E~~~~k~k~~~e~~~~~~~~~kLTGR-qlFe~~~~l~~~~~~~~  164 (212)
                      +.-||||.++|..|+.-.+-.+..++.+  ..+.++..+...+||+ ++||.+..+|-++-++.
T Consensus       209 ~~LTP~TeenFk~Wkd~~~~r~lkq~ee--~~s~Rk~~gr~~~~k~~e~FEt~~d~~~ddv~~g  270 (299)
T COG5252         209 EKLTPLTEENFKEWKDGRRLRILKQKEE--KESARKVKGRATGTKGVELFETRRDLFKDDVEAG  270 (299)
T ss_pred             CcCCcccHHHHHHhccchHHHHHHHHHH--HHhcccchhhhhhccchhhhhccccccccccccc
Confidence            3679999999999996544332222111  1122222333456666 99999999988774443

>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=93.81  E-value=0.28  Score=49.68  Aligned_cols=55  Identities=15%  Similarity=0.175  Sum_probs=49.5

Q ss_pred             ccccCCceEEEEEEEeCCCCCCCC-CceEEecCCCCCHHhHHHHHHHHHHHHHHhc
Q 028191            6 WLKLLFAVELALIFSHTEKYPDEP-PLLNVKSLRGIQAGDLKILKEKLEQEASENL   60 (212)
Q Consensus         6 ~~~~~~p~~l~L~f~~p~~YP~e~-P~i~i~~~~gL~~~~l~~L~~~L~~~aeenl   60 (212)
                      |++.+..+.+.++|.+|..||..+ |.+.+....+|.......|.+.|...+...+
T Consensus       459 ~~~~d~y~flrm~V~FP~nYPn~a~P~Fq~e~~s~~t~~~~~~~l~~L~~i~~q~v  514 (1081)
T KOG0309|consen  459 NHRVDDYIFLRMLVKFPANYPNNAAPSFQFENPSTITSTMKAKLLKILKDIALQKV  514 (1081)
T ss_pred             CCccccceeEEEEEeccccCCCCCCCceEEecCccccHHHHHHHHHHHHHHHHHHh
Confidence            778888899999999999999975 9999999999999999999999988887665

>KOG1814 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=89.89  E-value=0.63  Score=44.12  Aligned_cols=66  Identities=23%  Similarity=0.220  Sum_probs=49.9

Q ss_pred             cccCCceEEEEEEEeCCCCCCC-CCceEEecCCCCCHHhHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHH
Q 028191            7 LKLLFAVELALIFSHTEKYPDE-PPLLNVKSLRGIQAGDLKILKEKLEQEASENLGMAMIYTLVTSAKEWLSER   79 (212)
Q Consensus         7 ~~~~~p~~l~L~f~~p~~YP~e-~P~i~i~~~~gL~~~~l~~L~~~L~~~aeenlGm~MIFtLve~lqE~L~e~   79 (212)
                      ++++.-.-+.|.|-+|+.||.. ||.+.|.+ .+++..++..|...      +..|....|.+.+++++--..+
T Consensus        68 ~~~~~lPpivlkf~LP~~YPs~spP~f~l~s-~Wmn~~q~~~lc~~------el~~i~~~~q~m~~l~~~~~s~  134 (445)
T KOG1814|consen   68 LPLDHLPPIVLKFHLPNDYPSVSPPKFELKS-YWMNPDQKSALCSK------ELRLIEELNQMMDFLKESTISI  134 (445)
T ss_pred             cccccCCCeeeeeecCCccccCCCCceeeeh-cccCHHHhhhccch------hhccceeHHHHHHHHHHHHHHH
Confidence            4445545689999999999985 68888875 78888887777665      6678888888888888744333

>KOG0419 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]

Probab=88.51  E-value=1.1  Score=36.58  Aligned_cols=25  Identities=32%  Similarity=0.591  Sum_probs=21.5

Q ss_pred             eEEEEEEEeCCCCCCCCCceEEecC
Q 028191           13 VELALIFSHTEKYPDEPPLLNVKSL   37 (212)
Q Consensus        13 ~~l~L~f~~p~~YP~e~P~i~i~~~   37 (212)
                      ..+.|.+.+|++||+.||.+.+.+.
T Consensus        51 gtFkLtl~FteeYpnkPP~VrFvs~   75 (152)
T KOG0419|consen   51 GTFKLTLEFTEEYPNKPPTVRFVSK   75 (152)
T ss_pred             ceEEEEEEcccccCCCCCeeEeeee
Confidence            4677888889999999999998864

>PF00179 UQ_con: Ubiquitin-conjugating enzyme; InterPro: IPR000608 The post-translational attachment of ubiquitin (IPR000626 from INTERPRO) to proteins (ubiquitinylation) alters the function, location or trafficking of a protein, or targets it to the 26S proteasome for degradation [, , ]

Probab=87.20  E-value=0.69  Score=36.51  Aligned_cols=25  Identities=20%  Similarity=0.293  Sum_probs=20.1

Q ss_pred             eEEEEEEEeCCCCCCCCCceEEecC
Q 028191           13 VELALIFSHTEKYPDEPPLLNVKSL   37 (212)
Q Consensus        13 ~~l~L~f~~p~~YP~e~P~i~i~~~   37 (212)
                      ..+.+.|.+|++||..||.+.+...
T Consensus        45 g~f~~~i~~p~~YP~~pP~v~f~t~   69 (140)
T PF00179_consen   45 GIFKFRISFPPDYPFSPPKVRFLTP   69 (140)
T ss_dssp             SEEEEEEEETTTTTTS--EEEESSS
T ss_pred             ccccccccccccccccccccccccc
Confidence            3688999999999999999999863

Ubiquitinylation is an ATP-dependent process that involves the action of at least three enzymes: a ubiquitin-activating enzyme (E1, IPR000011 from INTERPRO), a ubiquitin-conjugating enzyme (E2), and a ubiquitin ligase (E3, IPR000569 from INTERPRO, IPR003613 from INTERPRO), which work sequentially in a cascade []. The E1 enzyme mediates an ATP-dependent transfer of a thioester-linked ubiquitin molecule to a cysteine residue on the E2 enzyme. The E2 enzyme (6.3.2.19 from EC) then either transfers the ubiquitin moiety directly to a substrate, or to an E3 ligase, which can also ubiquitinylate a substrate. There are several different E2 enzymes (over 30 in humans), which are broadly grouped into four classes, all of which have a core catalytic domain (containing the active site cysteine), and some of which have short N- and C-terminal amino acid extensions: class I enzymes consist of just the catalytic core domain (UBC), class II possess a UBC and a C-terminal extension, class III possess a UBC and an N-terminal extension, and class IV possess a UBC and both N- and C-terminal extensions. These extensions appear to be important for some subfamily function, including E2 localisation and protein-protein interactions []. In addition, there are proteins with an E2-like fold that are devoid of catalytic activity, but which appear to assist in poly-ubiquitin chain formation.; GO: 0016881 acid-amino acid ligase activity; PDB: 2AAK_A 3SY2_C 1FBV_C 3SQV_C 1C4Z_D 1JAT_B 2GMI_B 2H2Y_D 2R0J_A 3E95_B ....

>cd00195 UBCc Ubiquitin-conjugating enzyme E2, catalytic (UBCc) domain

Probab=85.41  E-value=0.91  Score=35.93  Aligned_cols=24  Identities=25%  Similarity=0.394  Sum_probs=21.2

Q ss_pred             eEEEEEEEeCCCCCCCCCceEEec
Q 028191           13 VELALIFSHTEKYPDEPPLLNVKS   36 (212)
Q Consensus        13 ~~l~L~f~~p~~YP~e~P~i~i~~   36 (212)
                      ..+.+.|.+|++||.++|.+.+..
T Consensus        46 ~~~~~~~~~p~~yP~~pP~v~f~~   69 (141)
T cd00195          46 GIFKLDIEFPEDYPFKPPKVRFVT   69 (141)
T ss_pred             CEEEEEEECCCccCCCCCeEEEeC
Confidence            368889999999999999999964

This is part of the ubiquitin-mediated protein degradation pathway in which a thiol-ester linkage forms between a conserved cysteine and the C-terminus of ubiquitin and complexes with ubiquitin protein ligase enzymes, E3. This pathway regulates many fundamental cellular processes. There are also other E2s which form thiol-ester linkages without the use of E3s as well as several UBC homologs (TSG101, Mms2, Croc-1 and similar proteins) which lack the active site cysteine essential for ubiquitination and appear to function in DNA repair pathways which were omitted from the scope of this CD.

>smart00212 UBCc Ubiquitin-conjugating enzyme E2, catalytic domain homologues

Probab=84.90  E-value=1.1  Score=35.72  Aligned_cols=25  Identities=20%  Similarity=0.340  Sum_probs=22.0

Q ss_pred             eEEEEEEEeCCCCCCCCCceEEecC
Q 028191           13 VELALIFSHTEKYPDEPPLLNVKSL   37 (212)
Q Consensus        13 ~~l~L~f~~p~~YP~e~P~i~i~~~   37 (212)
                      ..+.++|.+|++||..+|.+.+...
T Consensus        46 ~~f~~~l~~p~~yP~~pP~v~f~~~   70 (145)
T smart00212       46 GIFKLTIEFPPDYPFKPPKVKFITK   70 (145)
T ss_pred             cEEEEEEECCcccCCCCCEEEEeCC
Confidence            4688899999999999999998764

Proteins destined for proteasome-mediated degradation may be ubiquitinated. Ubiquitination follows conjugation of ubiquitin to a conserved cysteine residue of UBC homologues. This pathway functions in regulating many fundamental processes required for cell viability.TSG101 is one of several UBC homologues that lacks this active site cysteine.

>PTZ00390 ubiquitin-conjugating enzyme; Provisional

Probab=84.65  E-value=1.1  Score=36.66  Aligned_cols=24  Identities=29%  Similarity=0.391  Sum_probs=21.4

Q ss_pred             eEEEEEEEeCCCCCCCCCceEEec
Q 028191           13 VELALIFSHTEKYPDEPPLLNVKS   36 (212)
Q Consensus        13 ~~l~L~f~~p~~YP~e~P~i~i~~   36 (212)
                      ..+.|.|.+|++||..||.+.+..
T Consensus        49 g~f~~~i~~p~~YP~~pP~v~F~t   72 (152)
T PTZ00390         49 GYYKLELFLPEQYPMEPPKVRFLT   72 (152)
T ss_pred             cEEEEEEECccccCCCCCEEEEec
Confidence            468889999999999999999875

>PF08694 UFC1: Ubiquitin-fold modifier-conjugating enzyme 1; InterPro: IPR014806 Ubiquitin-like (UBL) post-translational modifiers are covalently linked to most, if not all, target protein(s) through an enzymatic cascade analogous to ubiquitylation, consisting of E1 (activating), E2 (conjugating), and E3 (ligating) enzymes

Probab=84.48  E-value=0.86  Score=37.53  Aligned_cols=27  Identities=30%  Similarity=0.540  Sum_probs=16.9

Q ss_pred             eEEEEEEEeCCCCCCCCCceEEecCCC
Q 028191           13 VELALIFSHTEKYPDEPPLLNVKSLRG   39 (212)
Q Consensus        13 ~~l~L~f~~p~~YP~e~P~i~i~~~~g   39 (212)
                      ..+.|.|..|.+||.++|.|.|-...|
T Consensus        75 YEF~~eFdIP~tYP~t~pEi~lPeLdG  101 (161)
T PF08694_consen   75 YEFDLEFDIPVTYPTTAPEIALPELDG  101 (161)
T ss_dssp             EEEEEEEE--TTTTTS----B-GGGTT
T ss_pred             EEEeeecCCCccCCCCCcceeccccCC
Confidence            478899999999999999999977655

Ubiquitin-fold modifier 1 (Ufm1) a ubiquitin-like protein is activated by a novel E1-like enzyme, Uba5, by forming a high-energy thioester bond. Activated Ufm1 is then transferred to its cognate E2-like enzyme, Ufc1, in a similar thioester linkage. This family represents the E2-like enzyme [].; PDB: 2Z6P_A 2K07_A 2Z6O_A 3EVX_D 3KPA_A.

>PLN00172 ubiquitin conjugating enzyme; Provisional

Probab=83.92  E-value=1.2  Score=36.02  Aligned_cols=24  Identities=21%  Similarity=0.348  Sum_probs=21.4

Q ss_pred             eEEEEEEEeCCCCCCCCCceEEec
Q 028191           13 VELALIFSHTEKYPDEPPLLNVKS   36 (212)
Q Consensus        13 ~~l~L~f~~p~~YP~e~P~i~i~~   36 (212)
                      ..+.+.|.+|++||..||.+.+..
T Consensus        48 g~f~~~i~fp~~YP~~pP~v~f~t   71 (147)
T PLN00172         48 GVFFLSILFPPDYPFKPPKVQFTT   71 (147)
T ss_pred             CEEEEEEECCcccCCCCCEEEEec
Confidence            368899999999999999999875

>COG5078 Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]

Probab=83.33  E-value=1.3  Score=36.64  Aligned_cols=25  Identities=24%  Similarity=0.430  Sum_probs=22.3

Q ss_pred             eEEEEEEEeCCCCCCCCCceEEecC
Q 028191           13 VELALIFSHTEKYPDEPPLLNVKSL   37 (212)
Q Consensus        13 ~~l~L~f~~p~~YP~e~P~i~i~~~   37 (212)
                      ..+.|++.+|++||..||.|.+.+.
T Consensus        53 g~f~~~l~fP~~YP~~PPkv~F~t~   77 (153)
T COG5078          53 GIFKLTLEFPEDYPFKPPKVRFTTK   77 (153)
T ss_pred             CEEEEEEECCCCCCCCCCeeeeccC
Confidence            4688899999999999999998865

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	212
2ebm_A	128	Solution Structure Of The Rwd Domain Of Human Rwd D		7e-10

>pdb|2EBM|A Chain A, Solution Structure Of The Rwd Domain Of Human Rwd Domain Containing Protein 1 Length = 128

Iteration: 1
 Score = 60.5 bits (145), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 30/71 (42%), Positives = 45/71 (63%)
Query: 12  AVELALIFSHTEKYPDEPPLLNVKSLRGIQAGDLKILKEKLEQEASENLGMAMIYTLVTS 71
            V+  L F+++EKYPDE PL  + S   ++  D+  + + L  +A ENLGM MI+TLVT+
Sbjct: 54  TVQTTLKFTYSEKYPDEAPLYEIFSQENLEDNDVSDILKLLALQAEENLGMVMIFTLVTA 113
Query: 72  AKEWLSERYSQ 82
            +E L+E   Q
Sbjct: 114 VQEKLNEIVDQ 124

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	212
2ebk_A	128	RWD domain-containing protein 3; alpha+beta sandwi	9e-16
1ukx_A	137	GCN2, GCN2 EIF2alpha kinase; UBC-like fold, triple	1e-15
2day_A	128	Ring finger protein 25; ligase, metal-binding, UB1	5e-15
2ebm_A	128	RWD domain-containing protein 1; alpha+beta sandwi	1e-14
2yz0_A	138	Serine/threonine-protein kinase GCN2; A-B-B-B-B-A-	3e-13

>2ebk_A RWD domain-containing protein 3; alpha+beta sandwich fold, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 128

 Score = 69.9 bits (171), Expect = 9e-16
 Identities = 19/72 (26%), Positives = 32/72 (44%), Gaps = 1/72 (1%)

Query: 13  VELALIFSHTEKYPDEPPLLNVKSLRGIQAGDLKILKEKLEQEASENLGMAMIYTLVTSA 72
           + L L+F     YP   P +++ S   +       +KEKL ++A   L   M++ LV   
Sbjct: 56  IPLELVFHLPVNYPSCLPGISINS-EQLTRAQCVTVKEKLLEQAESLLSEPMVHELVLWI 114

Query: 73  KEWLSERYSQDA 84
           ++ L    SQ  
Sbjct: 115 QQNLRHILSQPE 126

>1ukx_A GCN2, GCN2 EIF2alpha kinase; UBC-like fold, triple beta-turns, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.20.1.3 Length = 137

 Score = 70.0 bits (171), Expect = 1e-15
 Identities = 20/67 (29%), Positives = 35/67 (52%)

Query: 13  VELALIFSHTEKYPDEPPLLNVKSLRGIQAGDLKILKEKLEQEASENLGMAMIYTLVTSA 72
           V++ L       YPD  P +++K+ +G+    + +LK  LE+ A +  G  MI+ L    
Sbjct: 63  VQVELRVKCPPTYPDVVPEIDLKNAKGLSNESVNLLKSHLEELAKKQCGEVMIFELAHHV 122

Query: 73  KEWLSER 79
           + +LSE 
Sbjct: 123 QSFLSEH 129

>2day_A Ring finger protein 25; ligase, metal-binding, UB1 conjugation, UB1 conjugation pathway, RWD domain, alpha+beta sandwich fold, structural genomics; NMR {Homo sapiens} SCOP: d.20.1.3 PDB: 2dmf_A Length = 128

 Score = 67.6 bits (165), Expect = 5e-15
 Identities = 20/66 (30%), Positives = 33/66 (50%)

Query: 13  VELALIFSHTEKYPDEPPLLNVKSLRGIQAGDLKILKEKLEQEASENLGMAMIYTLVTSA 72
           V   L+     +YP E P +++++ RG+    +  + + L   A   LG AM+Y L+   
Sbjct: 59  VCFTLVLQVPAEYPHEVPQISIRNPRGLSDEQIHTILQVLGHVAKAGLGTAMLYELIEKG 118

Query: 73  KEWLSE 78
           KE LS 
Sbjct: 119 KEILSG 124

>2ebm_A RWD domain-containing protein 1; alpha+beta sandwich fold, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 128

 Score = 66.9 bits (163), Expect = 1e-14
 Identities = 30/70 (42%), Positives = 45/70 (64%)

Query: 13  VELALIFSHTEKYPDEPPLLNVKSLRGIQAGDLKILKEKLEQEASENLGMAMIYTLVTSA 72
           V+  L F+++EKYPDE PL  + S   ++  D+  + + L  +A ENLGM MI+TLVT+ 
Sbjct: 55  VQTTLKFTYSEKYPDEAPLYEIFSQENLEDNDVSDILKLLALQAEENLGMVMIFTLVTAV 114

Query: 73  KEWLSERYSQ 82
           +E L+E   Q
Sbjct: 115 QEKLNEIVDQ 124

>2yz0_A Serine/threonine-protein kinase GCN2; A-B-B-B-B-A-A, amino acid starvation signal response, EIF2alpha kinase, transferase; NMR {Saccharomyces cerevisiae} Length = 138

 Score = 63.1 bits (153), Expect = 3e-13
 Identities = 15/70 (21%), Positives = 35/70 (50%)

Query: 13  VELALIFSHTEKYPDEPPLLNVKSLRGIQAGDLKILKEKLEQEASENLGMAMIYTLVTSA 72
             + L F+ T  YP   P +  K+++ +    L++LK + ++  + + G  +I+ + +  
Sbjct: 62  SSITLHFAMTPMYPYTAPEIEFKNVQNVMDSQLQMLKSEFKKIHNTSRGQEIIFEITSFT 121

Query: 73  KEWLSERYSQ 82
           +E L E  + 
Sbjct: 122 QEKLDEFQNV 131

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	212
2ebm_A	128	RWD domain-containing protein 1; alpha+beta sandwi	99.73
2ebk_A	128	RWD domain-containing protein 3; alpha+beta sandwi	99.69
2yz0_A	138	Serine/threonine-protein kinase GCN2; A-B-B-B-B-A-	99.68
2day_A	128	Ring finger protein 25; ligase, metal-binding, UB1	99.67
1ukx_A	137	GCN2, GCN2 EIF2alpha kinase; UBC-like fold, triple	99.65
2dax_A	152	Protein C21ORF6; RWD domain, alpha+beta sandwich f	99.48
2daw_A	154	RWD domain containing protein 2; alpha+beta sandwi	99.48
4a9a_C	142	Translation machinery-associated protein 46; DRG-D	98.41
3kpa_A	168	Probable ubiquitin fold modifier conjugating ENZY;	89.69
2a7l_A	136	Hypothetical ubiquitin-conjugating enzyme LOC55284	89.54
2z6o_A	172	UFM1-conjugating enzyme 1; UFC1, ubiquitin, UBL, p	88.2
2fo3_A	125	Ubiquitin-conjugating enzyme; SGC, UBC, structural	88.04
2r0j_A	149	Ubiquitin carrier protein; ubiquitin conjugating,	88.0
1z2u_A	150	Ubiquitin-conjugating enzyme E2 2; PSI, secsg, pro	87.97
2h2y_A	136	Ubiquitin-conjugating enzyme; structural genomics,	87.8
2aak_A	152	UBC1, ubiquitin conjugating enzyme; ubiquitin conj	87.74
2bep_A	159	Ubiquitin-conjugating enzyme E2-25 kDa; ligase, E2	87.62
2ayv_A	166	Ubiquitin-conjugating enzyme E2; structural genomi	87.59
1fxt_A	149	Ubiquitin-conjugating enzyme E2-24 kDa; ligase; NM	87.59
2c2v_B	154	Ubiquitin-conjugating enzyme E2 N; chaperone, heat	87.56
2ucz_A	165	UBC7, ubiquitin conjugating enzyme; ubiquitin conj	87.45
3h8k_A	164	Ubiquitin-conjugating enzyme E2 G2; alpha beta, al	87.41
1zdn_A	158	Ubiquitin-conjugating enzyme E2S; structural genom	87.41
1jat_A	155	Ubiquitin-conjugating enzyme E2-17.5 kDa; UEV, lig	87.38
2awf_A	172	Ubiquitin-conjugating enzyme E2 G1; ligase, UBL co	87.35
2e2c_A	156	Ubiquitin conjugating enzyme; ubiquitin conjugatio	87.35
1zuo_A	186	Hypothetical protein LOC92912; ligase, ubiquitin-c	87.32
2c4o_A	165	Ubiquitin-conjugating enzyme E2 D2; thioesterifica	87.01
1ayz_A	169	UBC2, ubiquitin-conjugating enzyme RAD6; ubiquitin	86.81
1wzv_A	155	Ubiquitin-conjugating enzyme E2 L6; ligase; 2.10A	86.73
1jat_B	138	Ubiquitin-conjugating enzyme variant MMS2; UEV, li	86.71
2q0v_A	156	Ubiquitin-conjugating enzyme E2, putative; malaria	86.58
2onu_A	152	Ubiquitin-conjugating enzyme, putative; UBC, plasm	86.45
2y9m_A	172	Ubiquitin-conjugating enzyme E2-21 kDa; ligase-tra	86.29
1c4z_D	154	UBCH7, ubiquitin conjugating enzyme E2; bilobal st	86.25
4gpr_A	151	Ubiquitin-conjugating enzyme family protein; ubiqu	86.03
1yh2_A	169	HSPC150 protein similar to ubiquitin-conjugating e	85.99
2grr_A	161	Ubiquitin-conjugating enzyme E2 I; ubiquitin, conj	85.85
2z5d_A	179	Ubiquitin-conjugating enzyme E2 H; UBE2H, SGC, lig	85.82
2gjd_A	157	Ubiquitin-conjugating enzyme E2-18 kDa; UBC9P, SMT	85.52
1i7k_A	179	Ubiquitin-conjugating enzyme E2 H10; ligase; 1.95A	85.5
2pwq_A	216	Ubiquitin conjugating enzyme; structural genomics	85.36
3bzh_A	194	Ubiquitin-conjugating enzyme E2 E1; structural gen	85.1
2nvu_C	180	NEDD8-conjugating enzyme UBC12; multifunction macr	85.08
1yrv_A	169	Ubiquitin-conjugating ligase MGC351130; structural	85.04
1y8x_A	160	Ubiquitin-conjugating enzyme E2 M; ubiquitin-conju	85.04
3rz3_A	183	Ubiquitin-conjugating enzyme E2 R1; ubiquitin conj	84.85
2a4d_A	160	Ubiquitin-conjugating enzyme E2 variant 1; alterna	84.79
3k9o_A	201	Ubiquitin-conjugating enzyme E2 K; E2-25K, complex	84.5
3rcz_B	163	SUMO-conjugating enzyme UBC9; SUMO-like domain, pr	84.46
2f4z_A	193	Tgtwinscan_2721 - E2 domain; ubiquitin conjugating	84.43
3fn1_B	167	NEDD8-conjugating enzyme UBE2F; ligase, ATP-bindin	84.3
2f4w_A	187	Ubiquitin-conjugating enzyme E2, J2; endoplasmic r	84.15
4ds2_A	167	Ubiquitin-conjugating enzyme E2, putative; structu	83.85
1yf9_A	171	Ubiquitin carrier protein 4; SGPP, structural geno	83.78
3o2u_A	190	NEDD8-conjugating enzyme UBC12; E2 conjugase, liga	83.46
1tte_A	215	Ubiquitin-conjugating enzyme E2-24 kDa; UBC1, ubiq	82.65
3e46_A	253	Ubiquitin-conjugating enzyme E2-25 kDa; huntington	81.07

>2ebm_A RWD domain-containing protein 1; alpha+beta sandwich fold, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.73  E-value=1e-17  Score=130.38  Aligned_cols=75  Identities=40%  Similarity=0.548  Sum_probs=70.9

Q ss_pred             CceEEEEEEEeCCCCCCCCCceEEecCCCCCHHhHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhhcccc
Q 028191           11 FAVELALIFSHTEKYPDEPPLLNVKSLRGIQAGDLKILKEKLEQEASENLGMAMIYTLVTSAKEWLSERYSQDAG   85 (212)
Q Consensus        11 ~p~~l~L~f~~p~~YP~e~P~i~i~~~~gL~~~~l~~L~~~L~~~aeenlGm~MIFtLve~lqE~L~e~~~~~~~   85 (212)
                      .++.+.|+|++|++||+++|.|.|.+.+||+...+..|.+.|...+++++|+||||+||+|||++|.++++++++
T Consensus        53 ~~~~~~L~v~~p~~YP~~~P~i~l~~~~~l~~~~~~~L~~~L~~~~~e~~G~~mif~lv~~lqe~l~e~~~~~~~  127 (128)
T 2ebm_A           53 ETVQTTLKFTYSEKYPDEAPLYEIFSQENLEDNDVSDILKLLALQAEENLGMVMIFTLVTAVQEKLNEIVDQIKT  127 (128)
T ss_dssp             CCCBEEEEEECCSSTTTSCCEEEEEEESSCCHHHHHHHHHHHHHHHHHHTTSCCHHHHHHHHHHHHHHHHHHGGG
T ss_pred             CceeEEEEEEeCCCCCCCCceEEEEcCCCCCHHHHHHHHHHHHHHHHHhCCCEEHHHHHHHHHHHHHHHHHHHhc
Confidence            457899999999999999999999988899999999999999999999999999999999999999999998764

>2ebk_A RWD domain-containing protein 3; alpha+beta sandwich fold, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.69  E-value=2.7e-17  Score=128.27  Aligned_cols=74  Identities=24%  Similarity=0.290  Sum_probs=69.3

Q ss_pred             CceEEEEEEEeCCCCCCCCCceEEecCCCCCHHhHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhhcccc
Q 028191           11 FAVELALIFSHTEKYPDEPPLLNVKSLRGIQAGDLKILKEKLEQEASENLGMAMIYTLVTSAKEWLSERYSQDAG   85 (212)
Q Consensus        11 ~p~~l~L~f~~p~~YP~e~P~i~i~~~~gL~~~~l~~L~~~L~~~aeenlGm~MIFtLve~lqE~L~e~~~~~~~   85 (212)
                      .++++.|+|++|++||+++|.|.|. .+||++..+..|.+.|.+.+++++||+|||+||+|||++|.++++++++
T Consensus        54 ~~~~~~L~~~~p~~YP~~~P~i~l~-~~~L~~~~~~~l~~~L~~~~~e~~G~~mif~lv~~lqe~l~~~~~~p~~  127 (128)
T 2ebk_A           54 ADIPLELVFHLPVNYPSCLPGISIN-SEQLTRAQCVTVKEKLLEQAESLLSEPMVHELVLWIQQNLRHILSQPET  127 (128)
T ss_dssp             CCCEEEEEEEECSSTTSSCCCCCCC-CSSSCHHHHHHHHHHHHHHHHHTTTSCHHHHHHHHHTTSHHHHHCCCCC
T ss_pred             CCeEEEEEEECCCCCCCCCCeEEEE-hhhCCHHHHHHHHHHHHHHHHHhCCcchHHHHHHHHHHHHHHHHhCcCC
Confidence            3578999999999999999999998 5899999999999999999999999999999999999999999988753

>2yz0_A Serine/threonine-protein kinase GCN2; A-B-B-B-B-A-A, amino acid starvation signal response, EIF2alpha kinase, transferase; NMR {Saccharomyces cerevisiae}

Probab=99.68  E-value=9.4e-17  Score=126.57  Aligned_cols=68  Identities=22%  Similarity=0.428  Sum_probs=65.9

Q ss_pred             ceEEEEEEEeCCCCCCCCCceEEecCCCCCHHhHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHH
Q 028191           12 AVELALIFSHTEKYPDEPPLLNVKSLRGIQAGDLKILKEKLEQEASENLGMAMIYTLVTSAKEWLSER   79 (212)
Q Consensus        12 p~~l~L~f~~p~~YP~e~P~i~i~~~~gL~~~~l~~L~~~L~~~aeenlGm~MIFtLve~lqE~L~e~   79 (212)
                      +++|.|+|++|++||+++|.|.|.+.+||+...+..|++.|...+++++|+||||+||+|||+||.++
T Consensus        61 ~~~~~L~~~~p~~YP~~~P~i~l~~~~~L~~~~~~~L~~~L~~~~~e~~G~~mif~lv~~lqe~l~~~  128 (138)
T 2yz0_A           61 ESSITLHFAMTPMYPYTAPEIEFKNVQNVMDSQLQMLKSEFKKIHNTSRGQEIIFEITSFTQEKLDEF  128 (138)
T ss_dssp             CCEEEEEEECCSSTTSSCCEEEEECCCSCCSHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHHH
T ss_pred             ceEEEEEEECCCCCCCCCCeEEEecCCCCCHHHHHHHHHHHHHHHHHhCCCEEHHHHHHHHHHHHHHH
Confidence            57899999999999999999999988999999999999999999999999999999999999999988

>2day_A Ring finger protein 25; ligase, metal-binding, UB1 conjugation, UB1 conjugation pathway, RWD domain, alpha+beta sandwich fold, structural genomics; NMR {Homo sapiens} SCOP: d.20.1.3 PDB: 2dmf_A

Probab=99.67  E-value=5.7e-17  Score=126.17  Aligned_cols=67  Identities=30%  Similarity=0.544  Sum_probs=64.3

Q ss_pred             ceEEEEEEEeCCCCCCCCCceEEecCCCCCHHhHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHH
Q 028191           12 AVELALIFSHTEKYPDEPPLLNVKSLRGIQAGDLKILKEKLEQEASENLGMAMIYTLVTSAKEWLSE   78 (212)
Q Consensus        12 p~~l~L~f~~p~~YP~e~P~i~i~~~~gL~~~~l~~L~~~L~~~aeenlGm~MIFtLve~lqE~L~e   78 (212)
                      ++.+.|+|++|++||+++|.|.+.+.+||++..+..|++.|.+.+++++||+|||+||+++|+||.+
T Consensus        58 ~~~~~L~~~~p~~YP~~~P~i~~~~~~~L~~~~~~~L~~~L~~~~~e~~G~~mif~lv~~lqe~l~~  124 (128)
T 2day_A           58 YVCFTLVLQVPAEYPHEVPQISIRNPRGLSDEQIHTILQVLGHVAKAGLGTAMLYELIEKGKEILSG  124 (128)
T ss_dssp             CCEEEEEEEECSSTTSSCCEEEEEEEESSCHHHHHHHHHHHHHHHHHTTTSCCHHHHHHHHHHHHCC
T ss_pred             ceeEEEEEEcCCCCCCCCCCeEEEcCCCCCHHHHHHHHHHHHHHHHHhCCCEEhHHHHHHHHHHHHh
Confidence            4789999999999999999999999889999999999999999999999999999999999999965

>1ukx_A GCN2, GCN2 EIF2alpha kinase; UBC-like fold, triple beta-turns, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.20.1.3

Probab=99.65  E-value=1.7e-16  Score=124.64  Aligned_cols=69  Identities=29%  Similarity=0.514  Sum_probs=65.5

Q ss_pred             ceEEEEEEEeCCCCCCCCCceEEecCCCCCHHhHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHh
Q 028191           12 AVELALIFSHTEKYPDEPPLLNVKSLRGIQAGDLKILKEKLEQEASENLGMAMIYTLVTSAKEWLSERY   80 (212)
Q Consensus        12 p~~l~L~f~~p~~YP~e~P~i~i~~~~gL~~~~l~~L~~~L~~~aeenlGm~MIFtLve~lqE~L~e~~   80 (212)
                      +++|.|+|++|++||+++|.|.+.+.+||+...+..|++.|.+.+++++||+|||+||+|||+||.++.
T Consensus        62 ~~~~~L~v~~p~~YP~~~P~i~l~~~~~L~~~~~~~L~~~L~~~~~e~~G~~mif~lv~~lqe~l~~~~  130 (137)
T 1ukx_A           62 YVQVELRVKCPPTYPDVVPEIDLKNAKGLSNESVNLLKSHLEELAKKQCGEVMIFELAHHVQSFLSEHN  130 (137)
T ss_dssp             SCEEEEEECCCTTTTSSCCCCEEEEEESSSSSHHHHHHHHHHHHHHHHTTSCCHHHHHHHHHHHHHHHC
T ss_pred             ceEEEEEEECCCCCCCCCCcEEEecCCCCCHHHHHHHHHHHHHHHHHhCCCEEhHHHHHHHHHHHHhcC
Confidence            578999999999999999999998788999999999999999999999999999999999999998864

>2dax_A Protein C21ORF6; RWD domain, alpha+beta sandwich fold, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.20.1.3

Probab=99.48  E-value=6.9e-14  Score=112.25  Aligned_cols=72  Identities=21%  Similarity=0.182  Sum_probs=62.1

Q ss_pred             ceEEEEEEEeCCCCCCCCCceEEecCCCCCHHhHHHHHHHHHHHHH-HhcCChHHHHHHHHHHHHHHHHhhccc
Q 028191           12 AVELALIFSHTEKYPDEPPLLNVKSLRGIQAGDLKILKEKLEQEAS-ENLGMAMIYTLVTSAKEWLSERYSQDA   84 (212)
Q Consensus        12 p~~l~L~f~~p~~YP~e~P~i~i~~~~gL~~~~l~~L~~~L~~~ae-enlGm~MIFtLve~lqE~L~e~~~~~~   84 (212)
                      .+.|.|+|++|++||+++|.|+|.+. .+...+...|.+.|...++ +++||+|||+||+|||+++.+++.+..
T Consensus        72 ~~~l~L~v~lP~~YP~~~P~i~l~~~-~l~~~~~~~L~~~L~~~~~~~~~G~~mif~lv~~lqe~l~~~~~~~~  144 (152)
T 2dax_A           72 MAMFSLACILPFKYPAVLPEITVRSV-LLSRSQQTQLNTDLTAFLQKHCHGDVCILNATEWVREHASGYVSRDT  144 (152)
T ss_dssp             EEEEEEEEEECSSTTSSCCCCEEECT-TSCHHHHHHHHHHHHHHHHHSSCSSCCSHHHHHHHHHHHHHHCCCCC
T ss_pred             CceEEEEEECCCCCCCCCCeEEEEcc-cCCHHHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHhccc
Confidence            35899999999999999999999975 4777778888887776654 699999999999999999999987653

>2daw_A RWD domain containing protein 2; alpha+beta sandwich fold, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.20.1.3

Probab=99.48  E-value=5.3e-14  Score=113.64  Aligned_cols=72  Identities=13%  Similarity=0.084  Sum_probs=65.0

Q ss_pred             eEEEEEEEeCCCCCCCCCceEEecCCCCCHHhHHHHHHHHHHHHHHh-cCChHHHHHHHHHHHHHHHHhhcccc
Q 028191           13 VELALIFSHTEKYPDEPPLLNVKSLRGIQAGDLKILKEKLEQEASEN-LGMAMIYTLVTSAKEWLSERYSQDAG   85 (212)
Q Consensus        13 ~~l~L~f~~p~~YP~e~P~i~i~~~~gL~~~~l~~L~~~L~~~aeen-lGm~MIFtLve~lqE~L~e~~~~~~~   85 (212)
                      .++.|+|++|++||+++|.|.|.+. +++......|.+.|...++++ +||+|||+||+|||+++.+++.+.+.
T Consensus        75 ~~i~L~v~lP~~YP~~~P~i~l~~~-~l~~~~~~~L~~~L~~~l~~~~lG~~mif~lve~lqe~~~~~l~~~~~  147 (154)
T 2daw_A           75 VKIDLQVTMPHSYPYLALQLFGRSS-ELDRHQQLLLNKGLTSYIGTFDPGELCVCAAIQWLQDNSASYFLNRKL  147 (154)
T ss_dssp             EEEEEEEEECSSTTSSCCEEEEECS-SSCHHHHHHHHHHHHHHHTTSCTTSCSHHHHHHHHHHTTHHHHCCCCC
T ss_pred             ceEEEEEEcCCCCCCCCCcEEEEeC-CCCHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHhCcCC
Confidence            3799999999999999999999985 899999999999998888776 79999999999999999999887643

>4a9a_C Translation machinery-associated protein 46; DRG-DFRP complex, ribosome binding GTPase; 2.67A {Saccharomyces cerevisiae}

Probab=98.41  E-value=1.7e-07  Score=74.89  Aligned_cols=44  Identities=23%  Similarity=0.368  Sum_probs=33.5

Q ss_pred             CCCcccHHHHHHHHHHHHHHHHHHHHhcCccccccCCCCCCcchhHHhhcCc
Q 028191          103 HGEPVTVETFLAWRERFEAELALERAKLMPESALTAPKEKKLTGRQWFESGR  154 (212)
Q Consensus       103 ~GTpVT~EsF~~Wk~kf~~E~~~~k~k~~~e~~~~~~~~~kLTGRqlFe~~~  154 (212)
                      +.||||.|+|++||++...++....++.        .+++++|||++|..+.
T Consensus        34 nlTpVT~EtF~~WKk~k~~ek~~~~~~~--------~~kk~~tGRei~~~g~   77 (142)
T 4a9a_C           34 KLTPITIANFAQWKKDHVIAKINAEKKL--------SSKRKPTGREIILKMS   77 (142)
T ss_dssp             GCCCCCHHHHHHHHHHHHHHHHHHHHHH--------HTTSCCCHHHHHHHHH
T ss_pred             CCCCcCHHHHHHHHHHHHHHHHHHHHHH--------HHhhhhhhHHHHHhcc
Confidence            5699999999999999888775443221        1235789999999865

>3kpa_A Probable ubiquitin fold modifier conjugating ENZY; UBL conjugation pathway, ligase, structural genomics, PSI; 2.20A {Leishmania major} SCOP: d.20.1.4

Probab=89.69  E-value=0.18  Score=40.75  Aligned_cols=26  Identities=27%  Similarity=0.579  Sum_probs=22.8

Q ss_pred             eEEEEEEEeCCCCCCCCCceEEecCC
Q 028191           13 VELALIFSHTEKYPDEPPLLNVKSLR   38 (212)
Q Consensus        13 ~~l~L~f~~p~~YP~e~P~i~i~~~~   38 (212)
                      ..+.|.|.+|.+||.+||.|.+....
T Consensus        85 yeFkLefdiP~tYP~tPPeI~Fp~ld  110 (168)
T 3kpa_A           85 YEFEMNFDIPVTYPQAPPEIALPELE  110 (168)
T ss_dssp             EEEEEEEECCTTTTTSCCCCBCGGGT
T ss_pred             eEEEEEEeCCccCCCCCCEeeccccc
Confidence            36889999999999999999997753

>2a7l_A Hypothetical ubiquitin-conjugating enzyme LOC55284; structural genomics consortium, (SGC), ligase; 1.82A {Homo sapiens} SCOP: d.20.1.1

Probab=89.54  E-value=0.3  Score=37.98  Aligned_cols=25  Identities=20%  Similarity=0.490  Sum_probs=21.9

Q ss_pred             eEEEEEEEeCCCCCCCCCceEEecC
Q 028191           13 VELALIFSHTEKYPDEPPLLNVKSL   37 (212)
Q Consensus        13 ~~l~L~f~~p~~YP~e~P~i~i~~~   37 (212)
                      ..+.|.|.+|++||..||.+.+...
T Consensus        71 G~f~l~i~fp~~YP~~PP~v~F~T~   95 (136)
T 2a7l_A           71 EKFQLLFKFSSRYPFDSPQVMFTGE   95 (136)
T ss_dssp             CEEEEEEEECTTTTTSCCEEEEESS
T ss_pred             EEEEEEEECCCCCCCCCCEEEEeCC
Confidence            3688999999999999999998753

>2z6o_A UFM1-conjugating enzyme 1; UFC1, ubiquitin, UBL, polymorphism, UBL conjugation pathway, ligase; 1.60A {Homo sapiens} PDB: 2z6p_A 1ywz_A 2in1_A 2k07_A 3e2g_A 3evx_A

Probab=88.20  E-value=0.25  Score=40.39  Aligned_cols=23  Identities=26%  Similarity=0.495  Sum_probs=21.1

Q ss_pred             EEEEEEEeCCCCCCCCCceEEec
Q 028191           14 ELALIFSHTEKYPDEPPLLNVKS   36 (212)
Q Consensus        14 ~l~L~f~~p~~YP~e~P~i~i~~   36 (212)
                      .+.|.|.+|++||.+||.+.+..
T Consensus        84 ~F~L~~~fPe~YP~~PPeV~F~~  106 (172)
T 2z6o_A           84 EFDIEFDIPITYPTTAPEIAVPE  106 (172)
T ss_dssp             EEEEEEECCTTTTTSCCCCBCGG
T ss_pred             EEEEEEECCCCCCCCCCeeeeCC
Confidence            68899999999999999999954

>2fo3_A Ubiquitin-conjugating enzyme; SGC, UBC, structural genomics, structural genomics consortium, unknown function; 1.86A {Plasmodium vivax} SCOP: d.20.1.1

Probab=88.04  E-value=0.4  Score=36.46  Aligned_cols=25  Identities=20%  Similarity=0.364  Sum_probs=22.0

Q ss_pred             eEEEEEEEeCCCCCCCCCceEEecC
Q 028191           13 VELALIFSHTEKYPDEPPLLNVKSL   37 (212)
Q Consensus        13 ~~l~L~f~~p~~YP~e~P~i~i~~~   37 (212)
                      ..+.+.|.+|++||..||.+.+...
T Consensus        53 g~f~~~i~fp~~YP~~PP~v~f~t~   77 (125)
T 2fo3_A           53 EVYKLKIIFPDDYPLKPPIVYFLQK   77 (125)
T ss_dssp             CEEEEEEECCTTTTTSCCEEEECSS
T ss_pred             CEEEEEEEcCCCCCCCCCEEEEeCC
Confidence            4688999999999999999998763

>2r0j_A Ubiquitin carrier protein; ubiquitin conjugating, malaria, ligas conjugation pathway, structural genomics, structural genomi consortium; 1.85A {Plasmodium falciparum} PDB: 3e95_A

Probab=88.00  E-value=0.42  Score=37.43  Aligned_cols=25  Identities=28%  Similarity=0.382  Sum_probs=22.2

Q ss_pred             eEEEEEEEeCCCCCCCCCceEEecC
Q 028191           13 VELALIFSHTEKYPDEPPLLNVKSL   37 (212)
Q Consensus        13 ~~l~L~f~~p~~YP~e~P~i~i~~~   37 (212)
                      ..+.|.|.+|++||..||.+.+...
T Consensus        48 g~f~~~i~fp~~YP~~PP~v~f~t~   72 (149)
T 2r0j_A           48 GTYKLELFLPEQYPMEPPKVRFLTK   72 (149)
T ss_dssp             CEEEEEEECCTTTTTSCCEEEECSC
T ss_pred             CEEEEEEeCCcccCCCCCeeEeccC
Confidence            4688999999999999999998764

>1z2u_A Ubiquitin-conjugating enzyme E2 2; PSI, secsg, proteosome pathway, structural genomics, protein structure initiative; 1.10A {Caenorhabditis elegans} SCOP: d.20.1.1 PDB: 3tgd_A 2esk_A 1ur6_A 1w4u_A 4a49_B* 4a4b_C* 4a4c_C* 3eb6_B 3l1y_A 2esp_A 2eso_A 2esq_A 3l1z_A 2oxq_A 3a33_A 4ddg_D 4ddi_D 1x23_A 3rpg_A 2fuh_A ...

Probab=87.97  E-value=0.41  Score=37.48  Aligned_cols=25  Identities=20%  Similarity=0.339  Sum_probs=22.0

Q ss_pred             eEEEEEEEeCCCCCCCCCceEEecC
Q 028191           13 VELALIFSHTEKYPDEPPLLNVKSL   37 (212)
Q Consensus        13 ~~l~L~f~~p~~YP~e~P~i~i~~~   37 (212)
                      ..+.|.|.+|++||..||.+.+...
T Consensus        51 g~f~~~i~fp~~YP~~PP~v~f~t~   75 (150)
T 1z2u_A           51 GVFFLTIHFPTDYPFKPPKVAFTTR   75 (150)
T ss_dssp             CEEEEEEECCTTTTSSCCEEEESSC
T ss_pred             CEEEEEEECCCCCCCCCcEEEEecC
Confidence            3688999999999999999998764

>2h2y_A Ubiquitin-conjugating enzyme; structural genomics, unknown function, structural genomics consortium, SGC; 2.80A {Plasmodium falciparum 3D7}

Probab=87.80  E-value=0.42  Score=37.00  Aligned_cols=25  Identities=16%  Similarity=0.352  Sum_probs=22.0

Q ss_pred             eEEEEEEEeCCCCCCCCCceEEecC
Q 028191           13 VELALIFSHTEKYPDEPPLLNVKSL   37 (212)
Q Consensus        13 ~~l~L~f~~p~~YP~e~P~i~i~~~   37 (212)
                      ..+.|.|.+|++||..||.+.+...
T Consensus        67 g~f~~~i~fp~~YP~~PP~v~f~t~   91 (136)
T 2h2y_A           67 EVYKIKIIFPDNYPLKPPIVYFLQK   91 (136)
T ss_dssp             CEEEEEEECCTTTTTSCCEEEECSS
T ss_pred             CEEEEEEEeCCCCCCCCCEEEEeCC
Confidence            4688999999999999999998763

>2aak_A UBC1, ubiquitin conjugating enzyme; ubiquitin conjugation, ligase; 2.40A {Arabidopsis thaliana} SCOP: d.20.1.1 PDB: 1jas_A 2y4w_A 2yb6_A 2ybf_A 1q34_A 1z3d_A

Probab=87.74  E-value=0.41  Score=37.55  Aligned_cols=25  Identities=28%  Similarity=0.551  Sum_probs=22.1

Q ss_pred             eEEEEEEEeCCCCCCCCCceEEecC
Q 028191           13 VELALIFSHTEKYPDEPPLLNVKSL   37 (212)
Q Consensus        13 ~~l~L~f~~p~~YP~e~P~i~i~~~   37 (212)
                      ..+.|.|.+|++||..||.+.+...
T Consensus        51 g~f~~~i~fp~~YP~~PP~v~f~t~   75 (152)
T 2aak_A           51 GTFKLSLQFSEDYPNKPPTVRFVSR   75 (152)
T ss_dssp             CEEEEEEECCTTTTTSCCEEEESSC
T ss_pred             CEEEEEEECCCCCCCCCCEEEEecC
Confidence            4688999999999999999998764

>2bep_A Ubiquitin-conjugating enzyme E2-25 kDa; ligase, E2 conjugating enzyme, protein degradatio structural proteomics in europe, spine; 1.8A {Bos taurus} SCOP: d.20.1.1 PDB: 2bf8_A

Probab=87.62  E-value=0.43  Score=37.72  Aligned_cols=25  Identities=24%  Similarity=0.339  Sum_probs=22.0

Q ss_pred             eEEEEEEEeCCCCCCCCCceEEecC
Q 028191           13 VELALIFSHTEKYPDEPPLLNVKSL   37 (212)
Q Consensus        13 ~~l~L~f~~p~~YP~e~P~i~i~~~   37 (212)
                      ..+.|.|.+|++||..||.+.+...
T Consensus        58 g~f~~~i~fp~~YP~~PP~v~f~t~   82 (159)
T 2bep_A           58 GRYQLEIKIPETYPFNPPKVRFITK   82 (159)
T ss_dssp             CEEEEEEECCTTTTSSCCEEEESSC
T ss_pred             CEEEEEEeCCCcCCCCCCEEEeeCC
Confidence            3688999999999999999998864

>2ayv_A Ubiquitin-conjugating enzyme E2; structural genomics, structural genomics consortium, ubiquit ubiquitin-conjugating enzyme, SGC, ligase; 2.00A {Toxoplasma gondii} SCOP: d.20.1.1

Probab=87.59  E-value=0.44  Score=38.19  Aligned_cols=25  Identities=24%  Similarity=0.369  Sum_probs=22.2

Q ss_pred             eEEEEEEEeCCCCCCCCCceEEecC
Q 028191           13 VELALIFSHTEKYPDEPPLLNVKSL   37 (212)
Q Consensus        13 ~~l~L~f~~p~~YP~e~P~i~i~~~   37 (212)
                      ..+.|.|.+|++||..||.|.+...
T Consensus        68 G~f~l~i~fp~~YP~~PP~V~F~T~   92 (166)
T 2ayv_A           68 GVFFLNIHFPSDYPFKPPKVNFTTK   92 (166)
T ss_dssp             CEEEEEEECCTTTTSSCCEEEECSC
T ss_pred             CEEEEEEeCCCcCCCCCceeeeccC
Confidence            3688999999999999999998764

>1fxt_A Ubiquitin-conjugating enzyme E2-24 kDa; ligase; NMR {Saccharomyces cerevisiae} SCOP: d.20.1.1 PDB: 1fzy_A

Probab=87.59  E-value=0.42  Score=37.36  Aligned_cols=25  Identities=16%  Similarity=0.337  Sum_probs=22.0

Q ss_pred             eEEEEEEEeCCCCCCCCCceEEecC
Q 028191           13 VELALIFSHTEKYPDEPPLLNVKSL   37 (212)
Q Consensus        13 ~~l~L~f~~p~~YP~e~P~i~i~~~   37 (212)
                      ..+.|.|.+|++||..||.+.+...
T Consensus        49 g~f~~~i~fp~~YP~~PP~v~f~t~   73 (149)
T 1fxt_A           49 GKFVVDIEVPMEYPFKPPKMQFDTK   73 (149)
T ss_dssp             SEEEEEEECCTTTTSSCCEEEESSC
T ss_pred             cEEEEEEECCCCCCCCCCEEEEeCC
Confidence            3688999999999999999998763

>2c2v_B Ubiquitin-conjugating enzyme E2 N; chaperone, heat-shock protein complex, E3 ligase, ubiquitiny TPR, heat-shock protein; 2.9A {Homo sapiens} SCOP: d.20.1.1

Probab=87.56  E-value=0.45  Score=37.48  Aligned_cols=25  Identities=20%  Similarity=0.270  Sum_probs=22.2

Q ss_pred             eEEEEEEEeCCCCCCCCCceEEecC
Q 028191           13 VELALIFSHTEKYPDEPPLLNVKSL   37 (212)
Q Consensus        13 ~~l~L~f~~p~~YP~e~P~i~i~~~   37 (212)
                      ..+.|.|.+|++||..||.+.+...
T Consensus        52 g~f~~~i~fp~~YP~~PP~v~f~t~   76 (154)
T 2c2v_B           52 GTFKLELFLPEEYPMAAPKVRFMTK   76 (154)
T ss_dssp             CEEEEEEECCTTTTSSCCEEEECSC
T ss_pred             CeEEEEEEcCCCCCCCCCEEEeecC
Confidence            3688999999999999999998864

>2ucz_A UBC7, ubiquitin conjugating enzyme; ubiquitin conjugation, ligase, yeast; 2.93A {Saccharomyces cerevisiae} SCOP: d.20.1.1

Probab=87.45  E-value=0.45  Score=37.80  Aligned_cols=25  Identities=20%  Similarity=0.332  Sum_probs=22.2

Q ss_pred             eEEEEEEEeCCCCCCCCCceEEecC
Q 028191           13 VELALIFSHTEKYPDEPPLLNVKSL   37 (212)
Q Consensus        13 ~~l~L~f~~p~~YP~e~P~i~i~~~   37 (212)
                      ..+.|.|.+|++||..||.+.+...
T Consensus        52 g~f~~~i~fp~~YP~~PP~v~f~t~   76 (165)
T 2ucz_A           52 GVFNAKLEFPKDYPLSPPKLTFTPS   76 (165)
T ss_dssp             CEEEEEEECCTTTTTSCCEEEESSC
T ss_pred             cEEEEEEECCccCCCCCCEEEEeCC
Confidence            4688999999999999999998864

>3h8k_A Ubiquitin-conjugating enzyme E2 G2; alpha beta, all alpha, ligase, UBL conjugation pathway, endo reticulum, membrane, metal-binding; 1.80A {Homo sapiens} SCOP: d.20.1.1 PDB: 3fsh_A 2cyx_A 2kly_A

Probab=87.41  E-value=0.46  Score=37.66  Aligned_cols=25  Identities=24%  Similarity=0.363  Sum_probs=22.1

Q ss_pred             eEEEEEEEeCCCCCCCCCceEEecC
Q 028191           13 VELALIFSHTEKYPDEPPLLNVKSL   37 (212)
Q Consensus        13 ~~l~L~f~~p~~YP~e~P~i~i~~~   37 (212)
                      ..+.|.|.+|++||..||.+.+...
T Consensus        51 g~f~~~i~fp~~YP~~PP~v~f~t~   75 (164)
T 3h8k_A           51 GVFPAILSFPLDYPLSPPKMRFTCE   75 (164)
T ss_dssp             CEEEEEEECCTTTTSSCCEEEECSC
T ss_pred             CEEEEEEECCCCCCCCCCEEEEcCC
Confidence            4688999999999999999998864

>1zdn_A Ubiquitin-conjugating enzyme E2S; structural genomics consortium, ubiquitin-conjuga enzyme, ligase, SGC; 1.93A {Homo sapiens} SCOP: d.20.1.1

Probab=87.41  E-value=0.46  Score=37.59  Aligned_cols=25  Identities=12%  Similarity=0.161  Sum_probs=22.3

Q ss_pred             eEEEEEEEeCCCCCCCCCceEEecC
Q 028191           13 VELALIFSHTEKYPDEPPLLNVKSL   37 (212)
Q Consensus        13 ~~l~L~f~~p~~YP~e~P~i~i~~~   37 (212)
                      ..+.|.|.+|++||..||.+.+...
T Consensus        60 g~f~~~i~fp~~YP~~PP~v~f~t~   84 (158)
T 1zdn_A           60 GLFRMKLLLGKDFPASPPKGYFLTK   84 (158)
T ss_dssp             CEEEEEEECCTTTTTSCCEEEESSC
T ss_pred             cEEEEEEEcCCCCCCCCCEEEeccC
Confidence            3688999999999999999999865

>1jat_A Ubiquitin-conjugating enzyme E2-17.5 kDa; UEV, ligase; 1.60A {Saccharomyces cerevisiae} SCOP: d.20.1.1 PDB: 1jbb_A 2gmi_A 3hct_B 3hcu_B 4dhi_D 1j7d_B 4dhj_C 4dhz_F

Probab=87.38  E-value=0.47  Score=37.34  Aligned_cols=25  Identities=20%  Similarity=0.270  Sum_probs=22.3

Q ss_pred             eEEEEEEEeCCCCCCCCCceEEecC
Q 028191           13 VELALIFSHTEKYPDEPPLLNVKSL   37 (212)
Q Consensus        13 ~~l~L~f~~p~~YP~e~P~i~i~~~   37 (212)
                      ..+.|.|.+|++||..||.+.+...
T Consensus        52 g~f~~~i~fp~~YP~~PP~v~f~t~   76 (155)
T 1jat_A           52 GIFELELYLPDDYPMEAPKVRFLTK   76 (155)
T ss_dssp             EEEEEEEECCTTTTTSCCEEEECSC
T ss_pred             cEEEEEEEcCCCCCCCCCcceeecc
Confidence            4788999999999999999998764

>2awf_A Ubiquitin-conjugating enzyme E2 G1; ligase, UBL conjugation pathway, structural genomics, structural genomics consortium SGC; 2.10A {Homo sapiens} SCOP: d.20.1.1 PDB: 1pzv_A

Probab=87.35  E-value=0.46  Score=38.24  Aligned_cols=25  Identities=16%  Similarity=0.313  Sum_probs=22.2

Q ss_pred             eEEEEEEEeCCCCCCCCCceEEecC
Q 028191           13 VELALIFSHTEKYPDEPPLLNVKSL   37 (212)
Q Consensus        13 ~~l~L~f~~p~~YP~e~P~i~i~~~   37 (212)
                      ..+.|.|.+|++||..||.|.+...
T Consensus        65 G~f~~~i~fp~~YP~~PP~v~F~T~   89 (172)
T 2awf_A           65 GVFKAHLTFPKDYPLRPPKMKFITE   89 (172)
T ss_dssp             CEEEEEEECCTTTTSSCCEEEECSC
T ss_pred             cEEEEEEECCcccCCCCCcccccCC
Confidence            3688999999999999999998864

>2e2c_A Ubiquitin conjugating enzyme; ubiquitin conjugation, ubiquitin carrier protein, thioester ligase; 2.00A {Spisula solidissima} SCOP: d.20.1.1

Probab=87.35  E-value=0.46  Score=37.44  Aligned_cols=25  Identities=20%  Similarity=0.557  Sum_probs=22.1

Q ss_pred             eEEEEEEEeCCCCCCCCCceEEecC
Q 028191           13 VELALIFSHTEKYPDEPPLLNVKSL   37 (212)
Q Consensus        13 ~~l~L~f~~p~~YP~e~P~i~i~~~   37 (212)
                      ..+.|.|.+|++||..||.|.+...
T Consensus        56 g~f~~~i~fp~~YP~~PP~v~f~t~   80 (156)
T 2e2c_A           56 LKYKLTLEFPSDYPYKPPVVKFTTP   80 (156)
T ss_dssp             CEEEEEEECCTTTTSSCCEEEESSC
T ss_pred             cEEEEEEECCCCCCCCCCEEEEeCC
Confidence            4688999999999999999998764

>1zuo_A Hypothetical protein LOC92912; ligase, ubiquitin-conjugating enzyme, structural genomics consortium ,SGC; 1.80A {Homo sapiens} SCOP: d.20.1.1 PDB: 2qgx_A

Probab=87.32  E-value=0.39  Score=39.29  Aligned_cols=24  Identities=29%  Similarity=0.560  Sum_probs=21.4

Q ss_pred             EEEEEEEeCCCCCCCCCceEEecC
Q 028191           14 ELALIFSHTEKYPDEPPLLNVKSL   37 (212)
Q Consensus        14 ~l~L~f~~p~~YP~e~P~i~i~~~   37 (212)
                      .+.|.|.+|++||..||.+.+...
T Consensus        90 ~f~l~i~fp~~YP~~PP~V~f~tp  113 (186)
T 1zuo_A           90 YILLNFSFKDNFPFDPPFVRVVLP  113 (186)
T ss_dssp             SEEEEEECCTTTTSSCCEEEEEES
T ss_pred             EEEEEEECCCCCCCCCCeEEEeCC
Confidence            588999999999999999998764

>2c4o_A Ubiquitin-conjugating enzyme E2 D2; thioesterification, ligase, UBL conjugation pathway; HET: CME; 1.94A {Homo sapiens} SCOP: d.20.1.1 PDB: 2clw_A* 2c4p_A

Probab=87.01  E-value=0.5  Score=37.78  Aligned_cols=25  Identities=20%  Similarity=0.339  Sum_probs=22.1

Q ss_pred             eEEEEEEEeCCCCCCCCCceEEecC
Q 028191           13 VELALIFSHTEKYPDEPPLLNVKSL   37 (212)
Q Consensus        13 ~~l~L~f~~p~~YP~e~P~i~i~~~   37 (212)
                      ..+.|.|.+|++||..||.+.+...
T Consensus        66 g~f~l~i~fp~~YP~~PP~v~F~T~   90 (165)
T 2c4o_A           66 GVFFLTIHFPTDYPFKPPKVAFTTR   90 (165)
T ss_dssp             CEEEEEEECCTTTTSSCCEEEECSC
T ss_pred             ceEEEEEECCCcCCCCCCEEEEecC
Confidence            3688999999999999999998764

>1ayz_A UBC2, ubiquitin-conjugating enzyme RAD6; ubiquitin conjugation; 2.60A {Saccharomyces cerevisiae} SCOP: d.20.1.1

Probab=86.81  E-value=0.51  Score=37.90  Aligned_cols=25  Identities=28%  Similarity=0.584  Sum_probs=22.1

Q ss_pred             eEEEEEEEeCCCCCCCCCceEEecC
Q 028191           13 VELALIFSHTEKYPDEPPLLNVKSL   37 (212)
Q Consensus        13 ~~l~L~f~~p~~YP~e~P~i~i~~~   37 (212)
                      ..+.|.|.+|++||..||.|.+...
T Consensus        51 G~f~l~i~fp~~YP~~PP~v~F~t~   75 (169)
T 1ayz_A           51 GTFRLLLEFDEEYPNKPPHVKFLSE   75 (169)
T ss_dssp             CEEEEEEECCTTTTTSCCEEEESSC
T ss_pred             CEEEEEEECcccCCCCCCccccccC
Confidence            3688999999999999999998764

>1wzv_A Ubiquitin-conjugating enzyme E2 L6; ligase; 2.10A {Homo sapiens} SCOP: d.20.1.1 PDB: 1wzw_A 2kjh_A

Probab=86.73  E-value=0.53  Score=37.02  Aligned_cols=25  Identities=24%  Similarity=0.518  Sum_probs=22.2

Q ss_pred             eEEEEEEEeCCCCCCCCCceEEecC
Q 028191           13 VELALIFSHTEKYPDEPPLLNVKSL   37 (212)
Q Consensus        13 ~~l~L~f~~p~~YP~e~P~i~i~~~   37 (212)
                      ..+.|.|.+|++||..||.+.+...
T Consensus        51 g~f~~~i~fp~~YP~~PP~v~f~t~   75 (155)
T 1wzv_A           51 KAFNLRISFPPEYPFKPPMIKFTTK   75 (155)
T ss_dssp             EEEEEEEECCTTTTSSCCEEEESSC
T ss_pred             CEEEEEEECCCCCCCCCCcceeeCC
Confidence            4688999999999999999998864

>1jat_B Ubiquitin-conjugating enzyme variant MMS2; UEV, ligase; 1.60A {Saccharomyces cerevisiae} SCOP: d.20.1.1 PDB: 2gmi_B

Probab=86.71  E-value=0.51  Score=36.49  Aligned_cols=25  Identities=28%  Similarity=0.425  Sum_probs=22.3

Q ss_pred             eEEEEEEEeCCCCCCCCCceEEecC
Q 028191           13 VELALIFSHTEKYPDEPPLLNVKSL   37 (212)
Q Consensus        13 ~~l~L~f~~p~~YP~e~P~i~i~~~   37 (212)
                      ..+.|.|.+|++||..||.+.+...
T Consensus        57 g~f~~~i~fp~~YP~~PP~v~f~t~   81 (138)
T 1jat_B           57 RIYSLSIDCGPNYPDSPPKVTFISK   81 (138)
T ss_dssp             CEEEEEEECCTTTTTSCCEEEESBC
T ss_pred             eEEEEEEECCCCCCCCCCceEEEcc
Confidence            4688999999999999999998864

>2q0v_A Ubiquitin-conjugating enzyme E2, putative; malaria, structural G structural genomics consortium, SGC, ligase; 2.40A {Plasmodium falciparum} PDB: 3e95_C

Probab=86.58  E-value=0.54  Score=37.37  Aligned_cols=25  Identities=24%  Similarity=0.494  Sum_probs=22.3

Q ss_pred             eEEEEEEEeCCCCCCCCCceEEecC
Q 028191           13 VELALIFSHTEKYPDEPPLLNVKSL   37 (212)
Q Consensus        13 ~~l~L~f~~p~~YP~e~P~i~i~~~   37 (212)
                      ..+.|.|.+|++||..||.+.+...
T Consensus        72 G~f~l~i~fp~~YP~~PP~v~F~t~   96 (156)
T 2q0v_A           72 RIYSLTIFCDDNYPDSPPTVKFDTK   96 (156)
T ss_dssp             CEEEEEEECCTTTTTSCCEEEESBC
T ss_pred             cEEEEEEECCCcCCCCCCeEEEEcc
Confidence            3688999999999999999998864

>2onu_A Ubiquitin-conjugating enzyme, putative; UBC, plasmodium FAL structural genomics consortium, SGC, ligase; HET: PG4; 2.38A {Plasmodium falciparum}

Probab=86.45  E-value=0.56  Score=36.93  Aligned_cols=25  Identities=12%  Similarity=0.175  Sum_probs=21.9

Q ss_pred             eEEEEEEEeCCCCCCCCCceEEecC
Q 028191           13 VELALIFSHTEKYPDEPPLLNVKSL   37 (212)
Q Consensus        13 ~~l~L~f~~p~~YP~e~P~i~i~~~   37 (212)
                      ..+.|.|.+|++||..||.+.+...
T Consensus        46 g~f~~~i~fp~~YP~~pP~v~f~t~   70 (152)
T 2onu_A           46 GIWKVHVTLPDDYPFASPSIGFMNK   70 (152)
T ss_dssp             CEEEEEEECCTTTTTSCCEEEESSC
T ss_pred             eEEEEEEcCcccCCCCCCeEEEecC
Confidence            3688999999999999999998763

>2y9m_A Ubiquitin-conjugating enzyme E2-21 kDa; ligase-transport protein complex, ubiquitin conjugating ENZY complex, peroxisomal protein; 2.60A {Saccharomyces cerevisiae} PDB: 2y9p_A 2y9o_A

Probab=86.29  E-value=0.54  Score=37.79  Aligned_cols=24  Identities=17%  Similarity=0.491  Sum_probs=21.9

Q ss_pred             eEEEEEEEeCCCCCCCCCceEEec
Q 028191           13 VELALIFSHTEKYPDEPPLLNVKS   36 (212)
Q Consensus        13 ~~l~L~f~~p~~YP~e~P~i~i~~   36 (212)
                      ..+.|.|.+|++||..||.+.+..
T Consensus        65 g~f~~~i~fp~~YP~~PP~v~f~t   88 (172)
T 2y9m_A           65 HQFRILIEVPSSYPMNPPKISFMQ   88 (172)
T ss_dssp             CEEEEEEECCTTTTTSCCEEEECT
T ss_pred             CEEEEEEECCCcCCCCCCEEEEee
Confidence            468899999999999999999987

>1c4z_D UBCH7, ubiquitin conjugating enzyme E2; bilobal structure, elongated shape, E3 ubiquitin ligase, E2 ubiquitin conjugating enzyme; 2.60A {Homo sapiens} SCOP: d.20.1.1 PDB: 1fbv_C* 3sy2_C 3sqv_C

Probab=86.25  E-value=0.53  Score=36.95  Aligned_cols=24  Identities=21%  Similarity=0.498  Sum_probs=21.5

Q ss_pred             EEEEEEEeCCCCCCCCCceEEecC
Q 028191           14 ELALIFSHTEKYPDEPPLLNVKSL   37 (212)
Q Consensus        14 ~l~L~f~~p~~YP~e~P~i~i~~~   37 (212)
                      .+.|.|.+|++||..||.+.+...
T Consensus        50 ~f~~~i~fp~~YP~~PP~v~f~t~   73 (154)
T 1c4z_D           50 AFRIEINFPAEYPFKPPKITFKTK   73 (154)
T ss_dssp             CEEEEEECCTTTTTSCCEEEESSC
T ss_pred             eEEEEEEeCCCCCCCCCEEEEeCC
Confidence            588899999999999999998764

>4gpr_A Ubiquitin-conjugating enzyme family protein; ubiquitin conjugation, EHU ehring1, thiol esterification, ligase; 1.60A {Entamoeba histolytica}

Probab=86.03  E-value=0.6  Score=36.56  Aligned_cols=25  Identities=16%  Similarity=0.142  Sum_probs=22.0

Q ss_pred             eEEEEEEEeCCCCCCCCCceEEecC
Q 028191           13 VELALIFSHTEKYPDEPPLLNVKSL   37 (212)
Q Consensus        13 ~~l~L~f~~p~~YP~e~P~i~i~~~   37 (212)
                      ..+.|.|.+|++||..||.+.+...
T Consensus        51 g~f~~~i~fp~~YP~~pP~v~f~t~   75 (151)
T 4gpr_A           51 GLFFLDVHFPVDYPFKAPRVTFMTK   75 (151)
T ss_dssp             CEEEEEEECCTTTTSSCCEEEESSC
T ss_pred             CEEEEEEECCCCCCCCcceeEEecC
Confidence            4688999999999999999998764

>1yh2_A HSPC150 protein similar to ubiquitin-conjugating enzyme; structural genomics consortium, HSCP150, ligase, SGC; 2.00A {Homo sapiens} SCOP: d.20.1.1

Probab=85.99  E-value=0.59  Score=37.38  Aligned_cols=25  Identities=28%  Similarity=0.382  Sum_probs=22.3

Q ss_pred             eEEEEEEEeCCCCCCCCCceEEecC
Q 028191           13 VELALIFSHTEKYPDEPPLLNVKSL   37 (212)
Q Consensus        13 ~~l~L~f~~p~~YP~e~P~i~i~~~   37 (212)
                      ..+.|.|.+|++||..||.+.+...
T Consensus        51 g~f~~~i~fp~~YP~~PP~v~f~t~   75 (169)
T 1yh2_A           51 GVFKLEVIIPERYPFEPPQIRFLTP   75 (169)
T ss_dssp             CEEEEEEECCTTTTSSCCEEEESSC
T ss_pred             CEEEEEEEeCCCCCCCCcEEEeecC
Confidence            4688999999999999999998864

>2grr_A Ubiquitin-conjugating enzyme E2 I; ubiquitin, conjugation, small ubiquitin like modifer, SMT3, ligase; 1.30A {Homo sapiens} PDB: 2grq_A 2grn_A 2pe6_A 2gro_A 2grp_A 1u9a_A 1u9b_A 2vrr_A 2px9_B 1z5s_A 2xwu_A 3uin_A 3uio_A 3uip_A* 1kps_A 2o25_C 1a3s_A 3a4s_A 2uyz_A

Probab=85.85  E-value=0.62  Score=36.95  Aligned_cols=25  Identities=20%  Similarity=0.371  Sum_probs=22.0

Q ss_pred             eEEEEEEEeCCCCCCCCCceEEecC
Q 028191           13 VELALIFSHTEKYPDEPPLLNVKSL   37 (212)
Q Consensus        13 ~~l~L~f~~p~~YP~e~P~i~i~~~   37 (212)
                      ..+.|.|.+|++||..||.+.+...
T Consensus        59 g~f~~~i~fp~~YP~~PP~v~f~t~   83 (161)
T 2grr_A           59 GLFKLRMLFKDDYPSSPPKCKFEPP   83 (161)
T ss_dssp             CEEEEEEECCTTTTSSCCEEEESSC
T ss_pred             CEEEEEEEcCcccCCCCCEEEEecC
Confidence            3688899999999999999998864

>2z5d_A Ubiquitin-conjugating enzyme E2 H; UBE2H, SGC, ligase, structural genomics, structural genomics consortium; 2.10A {Homo sapiens}

Probab=85.82  E-value=0.58  Score=38.13  Aligned_cols=25  Identities=16%  Similarity=0.222  Sum_probs=22.1

Q ss_pred             eEEEEEEEeCCCCCCCCCceEEecC
Q 028191           13 VELALIFSHTEKYPDEPPLLNVKSL   37 (212)
Q Consensus        13 ~~l~L~f~~p~~YP~e~P~i~i~~~   37 (212)
                      ..+.|.|.+|++||..||.+.+...
T Consensus        68 G~f~l~i~fp~~YP~~PP~V~F~t~   92 (179)
T 2z5d_A           68 GVWKVRVDLPDKYPFKSPSIGFMNK   92 (179)
T ss_dssp             CEEEEEEECCTTTTTSCCEEEESSC
T ss_pred             CEEEEEeeCCCCCCCCCceEEEecC
Confidence            3688999999999999999999864

>2gjd_A Ubiquitin-conjugating enzyme E2-18 kDa; UBC9P, SMT3, crystallography, ligase; 1.75A {Saccharomyces cerevisiae} PDB: 2eke_A 3ong_B

Probab=85.52  E-value=0.53  Score=37.16  Aligned_cols=25  Identities=16%  Similarity=0.356  Sum_probs=22.0

Q ss_pred             eEEEEEEEeCCCCCCCCCceEEecC
Q 028191           13 VELALIFSHTEKYPDEPPLLNVKSL   37 (212)
Q Consensus        13 ~~l~L~f~~p~~YP~e~P~i~i~~~   37 (212)
                      ..+.|.|.+|++||..||.+.+...
T Consensus        56 g~f~~~i~fp~~YP~~PP~v~f~t~   80 (157)
T 2gjd_A           56 GVYPITVEYPNEYPSKPPKVKFPAG   80 (157)
T ss_dssp             BEEEEEEECCTTTTTSCCEEECCTT
T ss_pred             eEEEEEEEcCCCCCCCCCeeeccCC
Confidence            4688999999999999999998764

>1i7k_A Ubiquitin-conjugating enzyme E2 H10; ligase; 1.95A {Homo sapiens} SCOP: d.20.1.1

Probab=85.50  E-value=0.65  Score=37.76  Aligned_cols=25  Identities=16%  Similarity=0.337  Sum_probs=22.3

Q ss_pred             eEEEEEEEeCCCCCCCCCceEEecC
Q 028191           13 VELALIFSHTEKYPDEPPLLNVKSL   37 (212)
Q Consensus        13 ~~l~L~f~~p~~YP~e~P~i~i~~~   37 (212)
                      ..+.|.|.+|++||..||.|.+...
T Consensus        77 G~f~l~i~fp~~YP~~PP~V~F~T~  101 (179)
T 1i7k_A           77 LRYKLSLEFPSGYPYNAPTVKFLTP  101 (179)
T ss_dssp             CEEEEEEECCTTTTTSCCEEEESSC
T ss_pred             CEEEEEEECCCcCCCCCceEEEecC
Confidence            4688999999999999999998864

>2pwq_A Ubiquitin conjugating enzyme; structural genomics consortium, SGC, ligase; 1.90A {Plasmodium yoelii}

Probab=85.36  E-value=0.63  Score=38.99  Aligned_cols=25  Identities=20%  Similarity=0.437  Sum_probs=22.3

Q ss_pred             eEEEEEEEeCCCCCCCCCceEEecC
Q 028191           13 VELALIFSHTEKYPDEPPLLNVKSL   37 (212)
Q Consensus        13 ~~l~L~f~~p~~YP~e~P~i~i~~~   37 (212)
                      ..+.|.|.+|++||..||.+.+...
T Consensus        70 G~f~l~i~fP~~YP~~PP~V~F~T~   94 (216)
T 2pwq_A           70 GHFTLAITIPNDYPYNPPKIKFVTK   94 (216)
T ss_dssp             CEEEEEEECCTTTTSSCCEEEESSC
T ss_pred             eEEEEEEECCCcCCCCCCcccccCC
Confidence            3688999999999999999998864

>3bzh_A Ubiquitin-conjugating enzyme E2 E1; structural genomics consortium, ubiquitin-conjuga enzyme, ligase, SGC, UBL conjugation pathway; 1.60A {Homo sapiens} PDB: 1y6l_A

Probab=85.10  E-value=0.68  Score=38.09  Aligned_cols=25  Identities=24%  Similarity=0.400  Sum_probs=22.3

Q ss_pred             eEEEEEEEeCCCCCCCCCceEEecC
Q 028191           13 VELALIFSHTEKYPDEPPLLNVKSL   37 (212)
Q Consensus        13 ~~l~L~f~~p~~YP~e~P~i~i~~~   37 (212)
                      ..+.|.|.+|++||..||.|.+...
T Consensus        95 G~f~l~i~fp~~YP~~PP~V~F~T~  119 (194)
T 3bzh_A           95 GVFFLDITFTPEYPFKPPKVTFRTR  119 (194)
T ss_dssp             CEEEEEEECCTTTTTSCCEEEESSC
T ss_pred             CEEEEEEECCCcCCCCCccccccCC
Confidence            4688999999999999999998764

>2nvu_C NEDD8-conjugating enzyme UBC12; multifunction macromolecular complex, ubiquitin, ATP, conformational change, thioester, switch, adenylation, protein turnover, ligase; HET: ATP; 2.80A {Homo sapiens} SCOP: d.20.1.1

Probab=85.08  E-value=0.65  Score=37.71  Aligned_cols=24  Identities=21%  Similarity=0.664  Sum_probs=21.5

Q ss_pred             EEEEEEEeCCCCCCCCCceEEecC
Q 028191           14 ELALIFSHTEKYPDEPPLLNVKSL   37 (212)
Q Consensus        14 ~l~L~f~~p~~YP~e~P~i~i~~~   37 (212)
                      .+.|.|.+|++||..||.+.+...
T Consensus        72 ~f~~~i~fp~~YP~~PP~v~F~t~   95 (180)
T 2nvu_C           72 KFVFSFKVGQGYPHDPPKVKCETM   95 (180)
T ss_dssp             CEEEEEECCTTTTTSCCEEEECSC
T ss_pred             EEEEEEeCCCcCCCCCCcCceecc
Confidence            578899999999999999998864

>1yrv_A Ubiquitin-conjugating ligase MGC351130; structural genomics consortium, SGC, ubiquitin- conjugating enzyme; 2.18A {Homo sapiens} SCOP: d.20.1.1

Probab=85.04  E-value=0.6  Score=37.55  Aligned_cols=25  Identities=20%  Similarity=0.477  Sum_probs=22.2

Q ss_pred             eEEEEEEEeCCCCCCCCCceEEecC
Q 028191           13 VELALIFSHTEKYPDEPPLLNVKSL   37 (212)
Q Consensus        13 ~~l~L~f~~p~~YP~e~P~i~i~~~   37 (212)
                      ..+.|.|.+|++||..||.+.+...
T Consensus        70 G~f~l~i~fp~~YP~~PP~V~F~T~   94 (169)
T 1yrv_A           70 LVFQLTIHFTSEYNYAPPVVKFITI   94 (169)
T ss_dssp             CEEEEEEECCTTBTTBCCEEEESSC
T ss_pred             eEEEEEEECCccCCCCCCcceecCC
Confidence            3688999999999999999999864

>1y8x_A Ubiquitin-conjugating enzyme E2 M; ubiquitin-conjugating enzyme E2 M, ligase; 2.40A {Homo sapiens} SCOP: d.20.1.1

Probab=85.04  E-value=0.67  Score=36.80  Aligned_cols=25  Identities=20%  Similarity=0.594  Sum_probs=21.9

Q ss_pred             eEEEEEEEeCCCCCCCCCceEEecC
Q 028191           13 VELALIFSHTEKYPDEPPLLNVKSL   37 (212)
Q Consensus        13 ~~l~L~f~~p~~YP~e~P~i~i~~~   37 (212)
                      ..+.|.|.+|++||..||.+.+...
T Consensus        51 g~f~~~i~fp~~YP~~PP~v~f~t~   75 (160)
T 1y8x_A           51 GKFVFSFKVGQGYPHDPPKVKCETM   75 (160)
T ss_dssp             BCEEEEEECCTTTTTSCCEEEECSC
T ss_pred             CEEEEEEeCCCcCCCCCCEEEEecC
Confidence            3588899999999999999998864

>3rz3_A Ubiquitin-conjugating enzyme E2 R1; ubiquitin conjugating enzyme domain, E2 domain, ligase-ligas inhibitor complex; HET: U94; 2.30A {Homo sapiens} PDB: 2ob4_A

Probab=84.85  E-value=0.71  Score=37.42  Aligned_cols=25  Identities=16%  Similarity=0.247  Sum_probs=21.9

Q ss_pred             eEEEEEEEeCCCCCCCCCceEEecC
Q 028191           13 VELALIFSHTEKYPDEPPLLNVKSL   37 (212)
Q Consensus        13 ~~l~L~f~~p~~YP~e~P~i~i~~~   37 (212)
                      ..+.|.|.+|++||..||.+.+...
T Consensus        55 g~f~~~i~fp~~YP~~PP~v~f~t~   79 (183)
T 3rz3_A           55 GYFKARLKFPIDYPYSPPAFRFLTK   79 (183)
T ss_dssp             CEEEEEEECCTTTTSSCCEEEESSC
T ss_pred             CeEEEEEECCCCCCCCCCeeEecCC
Confidence            3588899999999999999998864

>2a4d_A Ubiquitin-conjugating enzyme E2 variant 1; alternative splicing, nuclear protein, UBL conjugation pathway,ubiquitin, ligase, structural genomics; 1.69A {Homo sapiens} SCOP: d.20.1.1 PDB: 2c2v_C 1j7d_A 1j74_A 1zgu_A

Probab=84.79  E-value=0.74  Score=36.82  Aligned_cols=25  Identities=24%  Similarity=0.468  Sum_probs=22.2

Q ss_pred             eEEEEEEEeCCCCCCCCCceEEecC
Q 028191           13 VELALIFSHTEKYPDEPPLLNVKSL   37 (212)
Q Consensus        13 ~~l~L~f~~p~~YP~e~P~i~i~~~   37 (212)
                      ..+.|.|.+|++||..||.+.+...
T Consensus        76 G~f~l~i~fp~~YP~~PP~v~F~T~  100 (160)
T 2a4d_A           76 RIYSLKIECGPKYPEAPPFVRFVTK  100 (160)
T ss_dssp             CEEEEEEECCTTTTTSCCEEEESBC
T ss_pred             eEEEEEEECCCcCCCCCcEEEEecC
Confidence            3688999999999999999998864

>3k9o_A Ubiquitin-conjugating enzyme E2 K; E2-25K, complex structure, ATP-binding, isopeptide BO ligase, nucleotide-binding, UBL conjugation pathway; 1.80A {Homo sapiens} PDB: 3k9p_A 1yla_A 2o25_A

Probab=84.50  E-value=0.71  Score=37.90  Aligned_cols=25  Identities=24%  Similarity=0.339  Sum_probs=22.0

Q ss_pred             eEEEEEEEeCCCCCCCCCceEEecC
Q 028191           13 VELALIFSHTEKYPDEPPLLNVKSL   37 (212)
Q Consensus        13 ~~l~L~f~~p~~YP~e~P~i~i~~~   37 (212)
                      ..+.|.|.+|++||..||.+.+...
T Consensus        55 g~f~~~i~fp~~YP~~pP~v~f~t~   79 (201)
T 3k9o_A           55 GRYQLEIKIPETYPFNPPKVRFITK   79 (201)
T ss_dssp             CEEEEEEECCTTTTTSCCEEEESSC
T ss_pred             CEEEEEEECCCcCCCCCCccccccC
Confidence            3688999999999999999998863

>3rcz_B SUMO-conjugating enzyme UBC9; SUMO-like domain, protein:protein interaction, protein ligase complex; HET: DNA; 1.90A {Schizosaccharomyces pombe} SCOP: d.20.1.1

Probab=84.46  E-value=0.79  Score=36.57  Aligned_cols=25  Identities=24%  Similarity=0.406  Sum_probs=22.0

Q ss_pred             eEEEEEEEeCCCCCCCCCceEEecC
Q 028191           13 VELALIFSHTEKYPDEPPLLNVKSL   37 (212)
Q Consensus        13 ~~l~L~f~~p~~YP~e~P~i~i~~~   37 (212)
                      ..+.|.|.+|++||..||.+.+...
T Consensus        62 g~f~l~i~fp~~YP~~pP~v~F~t~   86 (163)
T 3rcz_B           62 GLYKLTMAFPEEYPTRPPKCRFTPP   86 (163)
T ss_dssp             CEEEEEEECCTTTTTSCCEEEESSC
T ss_pred             CEEEEEEECCCCCCCCCCEEEEeCC
Confidence            4688999999999999999998864

>2f4z_A Tgtwinscan_2721 - E2 domain; ubiquitin conjugating tgtwinscan_2721, structural genomics, structural genomics consortium, SGC; 2.11A {Toxoplasma gondii} SCOP: d.20.1.1

Probab=84.43  E-value=0.72  Score=37.95  Aligned_cols=25  Identities=20%  Similarity=0.345  Sum_probs=22.2

Q ss_pred             eEEEEEEEeCCCCCCCCCceEEecC
Q 028191           13 VELALIFSHTEKYPDEPPLLNVKSL   37 (212)
Q Consensus        13 ~~l~L~f~~p~~YP~e~P~i~i~~~   37 (212)
                      ..+.|.|.+|++||..||.|.+...
T Consensus        92 G~f~l~i~fp~~YP~~PP~V~F~T~  116 (193)
T 2f4z_A           92 GHFTLDIVIPPDYPYNPPKMKFVTK  116 (193)
T ss_dssp             CEEEEEEECCTTTTTSCCEEEESSC
T ss_pred             CEEEEEEECCCcCCCCCCeEEEecC
Confidence            3688999999999999999998864

>3fn1_B NEDD8-conjugating enzyme UBE2F; ligase, ATP-binding, cell cycle, nucleotide-binding, UBL CON pathway; 2.50A {Homo sapiens} PDB: 2edi_A

Probab=84.30  E-value=0.63  Score=37.00  Aligned_cols=25  Identities=12%  Similarity=0.167  Sum_probs=21.7

Q ss_pred             eEEEEEEEeCCCCCCCCCceEEecC
Q 028191           13 VELALIFSHTEKYPDEPPLLNVKSL   37 (212)
Q Consensus        13 ~~l~L~f~~p~~YP~e~P~i~i~~~   37 (212)
                      ..+.|.|.+|++||..||.|.+...
T Consensus        61 g~f~~~i~fp~~YP~~pP~v~f~t~   85 (167)
T 3fn1_B           61 GKFQFETEVPDAYNMVPPKVKCLTK   85 (167)
T ss_dssp             CCEEEEEECCTTBTTBCCEEEECSC
T ss_pred             CEEEEEEECCCCCCCCCCeeEecCC
Confidence            3578899999999999999998764

>2f4w_A Ubiquitin-conjugating enzyme E2, J2; endoplasmic reticulum, ligase, UBL conjugation pathway, structural genomics consortium (SGC); 2.00A {Homo sapiens} SCOP: d.20.1.1

Probab=84.15  E-value=0.81  Score=37.35  Aligned_cols=25  Identities=12%  Similarity=0.150  Sum_probs=22.2

Q ss_pred             eEEEEEEEeCCCCCCCCCceEEecC
Q 028191           13 VELALIFSHTEKYPDEPPLLNVKSL   37 (212)
Q Consensus        13 ~~l~L~f~~p~~YP~e~P~i~i~~~   37 (212)
                      ..+.|.|.+|++||..||.|.+...
T Consensus        61 G~f~l~i~fP~~YP~~PP~v~f~T~   85 (187)
T 2f4w_A           61 GYYHGKLIFPREFPFKPPSIYMITP   85 (187)
T ss_dssp             CEEEEEEECCTTTTSSCCEEEECSC
T ss_pred             CEEEEEEEcCCCCCCCCCcccccCC
Confidence            4688999999999999999998864

>4ds2_A Ubiquitin-conjugating enzyme E2, putative; structural genomics, PSI, protein structure initiative; 2.63A {Trypanosoma cruzi}

Probab=83.85  E-value=0.86  Score=36.29  Aligned_cols=25  Identities=24%  Similarity=0.472  Sum_probs=22.0

Q ss_pred             eEEEEEEEeCCCCCCCCCceEEecC
Q 028191           13 VELALIFSHTEKYPDEPPLLNVKSL   37 (212)
Q Consensus        13 ~~l~L~f~~p~~YP~e~P~i~i~~~   37 (212)
                      ..+.|.|.+|++||..||.+.+...
T Consensus        69 g~f~~~i~fp~~YP~~pP~v~f~t~   93 (167)
T 4ds2_A           69 NTYQLSVLFSDDYPHEPPTVRFVTP   93 (167)
T ss_dssp             CEEEEEEECCTTTTTSCCEEEESSC
T ss_pred             CEEEEEEECCCCCCCCCCEEEEeCC
Confidence            4588999999999999999998864

>1yf9_A Ubiquitin carrier protein 4; SGPP, structural genomics, PSI, protein structure initiative ubiquitin conjugating enzyme; 2.00A {Leishmania major} SCOP: d.20.1.1

Probab=83.78  E-value=0.82  Score=36.80  Aligned_cols=25  Identities=16%  Similarity=0.181  Sum_probs=22.0

Q ss_pred             eEEEEEEEeCCCCCCCCCceEEecC
Q 028191           13 VELALIFSHTEKYPDEPPLLNVKSL   37 (212)
Q Consensus        13 ~~l~L~f~~p~~YP~e~P~i~i~~~   37 (212)
                      ..+.|.|.+|++||..||.|.+...
T Consensus        55 g~f~~~i~fp~~YP~~PP~v~F~t~   79 (171)
T 1yf9_A           55 GTWMLHVQLPSDYPFKSPSIGFCNR   79 (171)
T ss_dssp             CEEEEEEECCTTTTTSCCEEEESSC
T ss_pred             ceEEEEEEcCCCCCCCCCeEEeecC
Confidence            3688999999999999999998763

>3o2u_A NEDD8-conjugating enzyme UBC12; E2 conjugase, ligase; 2.00A {Saccharomyces cerevisiae} PDB: 3tdi_C

Probab=83.46  E-value=0.83  Score=37.37  Aligned_cols=25  Identities=24%  Similarity=0.364  Sum_probs=21.8

Q ss_pred             eEEEEEEEeCCCCCCCCCceEEecC
Q 028191           13 VELALIFSHTEKYPDEPPLLNVKSL   37 (212)
Q Consensus        13 ~~l~L~f~~p~~YP~e~P~i~i~~~   37 (212)
                      ..+.|.|.+|++||..||.+.+...
T Consensus        80 g~f~~~i~fp~~YP~~PP~v~f~t~  104 (190)
T 3o2u_A           80 GSINFNLDFNEVYPIEPPKVVCLKK  104 (190)
T ss_dssp             CCEEEEEECCTTTTTSCCEEEECSC
T ss_pred             CEEEEEEECCCCCCCCCceeEEecC
Confidence            3578899999999999999998764

>1tte_A Ubiquitin-conjugating enzyme E2-24 kDa; UBC1, ubiquitin-dependent degradation, ligase; NMR {Saccharomyces cerevisiae} SCOP: a.5.2.1 d.20.1.1

Probab=82.65  E-value=0.68  Score=38.77  Aligned_cols=24  Identities=17%  Similarity=0.397  Sum_probs=21.3

Q ss_pred             EEEEEEEeCCCCCCCCCceEEecC
Q 028191           14 ELALIFSHTEKYPDEPPLLNVKSL   37 (212)
Q Consensus        14 ~l~L~f~~p~~YP~e~P~i~i~~~   37 (212)
                      .+.|.|.+|++||..||.+.+...
T Consensus        51 ~f~l~i~fP~~YP~~PP~V~F~T~   74 (215)
T 1tte_A           51 KFVVDIEVPMEYPFKPPKMQFDTK   74 (215)
T ss_dssp             CCEEEEECCSCSSSCCCEEEETTT
T ss_pred             EEEEEEeCCccCCCCCCcccccCC
Confidence            578899999999999999998764

>3e46_A Ubiquitin-conjugating enzyme E2-25 kDa; huntington interacting, ligase, alternative splicing, cytoplasm, UBL conjugation, UBL conjugation pathway; 1.86A {Homo sapiens} SCOP: a.5.2.1 d.20.1.1 PDB: 3f92_A*

Probab=81.07  E-value=1.1  Score=38.44  Aligned_cols=25  Identities=24%  Similarity=0.339  Sum_probs=22.0

Q ss_pred             eEEEEEEEeCCCCCCCCCceEEecC
Q 028191           13 VELALIFSHTEKYPDEPPLLNVKSL   37 (212)
Q Consensus        13 ~~l~L~f~~p~~YP~e~P~i~i~~~   37 (212)
                      ..+.|.|.+|++||..||.|.+...
T Consensus       107 G~f~l~i~fp~~YP~~PP~V~F~T~  131 (253)
T 3e46_A          107 GRYQLEIKIPETYPFNPPKVRFITK  131 (253)
T ss_dssp             CEEEEEEECCTTTTSSCCEEEESSC
T ss_pred             CEEEEEEECCCCCCCCCCeeeecCC
Confidence            3688999999999999999998763

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	212
d1ukxa_	137	d.20.1.3 (A:) EIF2-alpha kinase 4 (GCN2-like prote	2e-13
d2daya1	115	d.20.1.3 (A:8-122) E3 ubiquitin-protein ligase RNF	4e-12
d2daxa1	140	d.20.1.3 (A:8-147) Uncharacterized protein C21orf6	1e-06
d2dawa1	141	d.20.1.3 (A:8-148) RWD domain-containing protein 2	1e-04

>d1ukxa_ d.20.1.3 (A:) EIF2-alpha kinase 4 (GCN2-like protein) {Mouse (Mus musculus) [TaxId: 10090]} Length = 137

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: RWD domain
domain: EIF2-alpha kinase 4 (GCN2-like protein)
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 63.1 bits (153), Expect = 2e-13
 Identities = 20/67 (29%), Positives = 35/67 (52%)

Query: 13  VELALIFSHTEKYPDEPPLLNVKSLRGIQAGDLKILKEKLEQEASENLGMAMIYTLVTSA 72
           V++ L       YPD  P +++K+ +G+    + +LK  LE+ A +  G  MI+ L    
Sbjct: 63  VQVELRVKCPPTYPDVVPEIDLKNAKGLSNESVNLLKSHLEELAKKQCGEVMIFELAHHV 122

Query: 73  KEWLSER 79
           + +LSE 
Sbjct: 123 QSFLSEH 129

>d2daya1 d.20.1.3 (A:8-122) E3 ubiquitin-protein ligase RNF25 {Human (Homo sapiens) [TaxId: 9606]} Length = 115

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: RWD domain
domain: E3 ubiquitin-protein ligase RNF25
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 58.8 bits (142), Expect = 4e-12
 Identities = 19/64 (29%), Positives = 32/64 (50%)

Query: 13  VELALIFSHTEKYPDEPPLLNVKSLRGIQAGDLKILKEKLEQEASENLGMAMIYTLVTSA 72
           V   L+     +YP E P +++++ RG+    +  + + L   A   LG AM+Y L+   
Sbjct: 52  VCFTLVLQVPAEYPHEVPQISIRNPRGLSDEQIHTILQVLGHVAKAGLGTAMLYELIEKG 111

Query: 73  KEWL 76
           KE L
Sbjct: 112 KEIL 115

>d2daxa1 d.20.1.3 (A:8-147) Uncharacterized protein C21orf6 {Human (Homo sapiens) [TaxId: 9606]} Length = 140

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: RWD domain
domain: Uncharacterized protein C21orf6
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 44.0 bits (103), Expect = 1e-06
 Identities = 13/72 (18%), Positives = 24/72 (33%)

Query: 13  VELALIFSHTEKYPDEPPLLNVKSLRGIQAGDLKILKEKLEQEASENLGMAMIYTLVTSA 72
              +L      KYP   P + V+S+   ++   ++  +          G   I       
Sbjct: 66  AMFSLACILPFKYPAVLPEITVRSVLLSRSQQTQLNTDLTAFLQKHCHGDVCILNATEWV 125

Query: 73  KEWLSERYSQDA 84
           +E  S   S+D 
Sbjct: 126 REHASGYVSRDT 137

>d2dawa1 d.20.1.3 (A:8-148) RWD domain-containing protein 2 {Human (Homo sapiens) [TaxId: 9606]} Length = 141

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: RWD domain
domain: RWD domain-containing protein 2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.5 bits (89), Expect = 1e-04
 Identities = 9/66 (13%), Positives = 22/66 (33%)

Query: 13  VELALIFSHTEKYPDEPPLLNVKSLRGIQAGDLKILKEKLEQEASENLGMAMIYTLVTSA 72
           V++ L  +    YP     L  +S    +   L + K       + + G   +   +   
Sbjct: 68  VKIDLQVTMPHSYPYLALQLFGRSSELDRHQQLLLNKGLTSYIGTFDPGELCVCAAIQWL 127

Query: 73  KEWLSE 78
           ++  + 
Sbjct: 128 QDNSAS 133

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	212
d2daya1	115	E3 ubiquitin-protein ligase RNF25 {Human (Homo sap	99.65
d1ukxa_	137	EIF2-alpha kinase 4 (GCN2-like protein) {Mouse (Mu	99.61
d2dawa1	141	RWD domain-containing protein 2 {Human (Homo sapie	99.47
d2daxa1	140	Uncharacterized protein C21orf6 {Human (Homo sapie	99.43
d2a7la1	117	Ubiquitin-protein ligase W (E2 W) {Human (Homo sap	89.83
d2fo3a1	109	Putative ubiquitin-conjugating enzyme, E2 domain {	89.65
d1zuoa1	162	Ubiquitin-conjugating enzyme E2 Q2, C-terminal dom	87.37
d1z2ua1	147	Ubiquitin conjugating enzyme, UBC {Caenorhabditis	87.26
d1c4zd_	144	Ubiquitin conjugating enzyme, UBC {Human (Homo sap	87.21
d2f4wa1	157	Ubiquitin conjugating enzyme, UBC {Human (Homo sap	86.73
d2awfa1	125	Ubiquitin conjugating enzyme, UBC {Human (Homo sap	86.47
d2z5da1	152	Ubiquitin conjugating enzyme, UBC {Human (Homo sap	86.0
d2ucza_	164	Ubiquitin conjugating enzyme, UBC {Baker's yeast (	85.94
d1wzva1	150	Ubiquitin conjugating enzyme, UBC {Human (Homo sap	85.83
d1yh2a1	154	Ubiquitin conjugating enzyme, UBC {Human (Homo sap	85.57
d2bepa1	154	Ubiquitin-conjugating enzyme E2-25 kDa, E2 domain	85.3
d1yf9a1	158	Ubiquitin conjugating enzyme, UBC {Leishmania majo	85.11
d1ayza_	153	Ubiquitin conjugating enzyme, UBC {Baker's yeast (	85.07
d2f4za1	161	Hypothetical protein Tgtwinscan_2721, E2 domain {T	85.0
d1jatb_	136	Ubiquitin conjugating enzyme, UBC {Baker's yeast (	84.78
d1j7db_	149	Ubiquitin conjugating enzyme, UBC {Human (Homo sap	84.69
d1yrva1	148	Ubiquitin conjugating enzyme, UBC {Human (Homo sap	84.31
d2in1a1	162	Ufm1-conjugating enzyme 1, UFC1 {Human (Homo sapie	83.57
d2a4da1	139	Ubiquitin conjugating enzyme, UBC {Human (Homo sap	83.32
d1y8xa1	157	Ubiquitin conjugating enzyme, UBC {Human (Homo sap	83.28
d1i7ka_	146	Ubiquitin conjugating enzyme, UBC {Human (Homo sap	83.2
d2uyza1	156	Ubiquitin conjugating enzyme, UBC {Human (Homo sap	83.09
d2e2ca_	156	Ubiquitin conjugating enzyme, UBC {Clam (Spisula s	82.96
d1z3da1	149	Ubiquitin conjugating enzyme, UBC {Nematode (Caeno	82.94
d1pzva_	161	Ubiquitin conjugating enzyme, UBC {Nematode (Caeno	82.75
d1fzya_	149	Ubiquitin conjugating enzyme, UBC {Baker's yeast (	82.21
d1s1qa_	141	Tumor susceptibility gene 101 (TSG101) {Human (Hom	81.72
d1y6la_	148	Ubiquitin conjugating enzyme, UBC {Human (Homo sap	81.36
d1jata_	152	Ubiquitin conjugating enzyme, UBC {Baker's yeast (	81.3
d1zdna1	151	Ubiquitin conjugating enzyme, UBC {Human(Homo sapi	81.19

>d2daya1 d.20.1.3 (A:8-122) E3 ubiquitin-protein ligase RNF25 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: RWD domain
domain: E3 ubiquitin-protein ligase RNF25
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.65  E-value=1.5e-16  Score=119.95  Aligned_cols=65  Identities=29%  Similarity=0.554  Sum_probs=62.8

Q ss_pred             ceEEEEEEEeCCCCCCCCCceEEecCCCCCHHhHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHH
Q 028191           12 AVELALIFSHTEKYPDEPPLLNVKSLRGIQAGDLKILKEKLEQEASENLGMAMIYTLVTSAKEWL   76 (212)
Q Consensus        12 p~~l~L~f~~p~~YP~e~P~i~i~~~~gL~~~~l~~L~~~L~~~aeenlGm~MIFtLve~lqE~L   76 (212)
                      .++++|+|++|++||+++|.+.+.+.+||+..++..|++.|...+++++||||||+||+|+||||
T Consensus        51 ~~~v~L~~~~p~~YP~~~P~i~~~~~~~l~~~~~~~L~~~l~~~~~e~~G~~mif~lv~~~qE~L  115 (115)
T d2daya1          51 YVCFTLVLQVPAEYPHEVPQISIRNPRGLSDEQIHTILQVLGHVAKAGLGTAMLYELIEKGKEIL  115 (115)
T ss_dssp             CCEEEEEEEECSSTTSSCCEEEEEEEESSCHHHHHHHHHHHHHHHHHTTTSCCHHHHHHHHHHHH
T ss_pred             ceEEEEEEEcCCCCCCCCCcEEeeccCCCCHHHHHHHHHHHHHHHHHcCCCEEHHHHHHHHHhhC
Confidence            47899999999999999999999999999999999999999999999999999999999999997

>d1ukxa_ d.20.1.3 (A:) EIF2-alpha kinase 4 (GCN2-like protein) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: RWD domain
domain: EIF2-alpha kinase 4 (GCN2-like protein)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.61  E-value=3.1e-16  Score=121.55  Aligned_cols=68  Identities=29%  Similarity=0.529  Sum_probs=65.0

Q ss_pred             ceEEEEEEEeCCCCCCCCCceEEecCCCCCHHhHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHH
Q 028191           12 AVELALIFSHTEKYPDEPPLLNVKSLRGIQAGDLKILKEKLEQEASENLGMAMIYTLVTSAKEWLSER   79 (212)
Q Consensus        12 p~~l~L~f~~p~~YP~e~P~i~i~~~~gL~~~~l~~L~~~L~~~aeenlGm~MIFtLve~lqE~L~e~   79 (212)
                      .+++.|.|++|++||.++|.+.+...+||+...+..|.+.|.+.+++++|+||||+||+||||||.++
T Consensus        62 ~~~i~L~~~lp~~YP~~~P~i~~~~~~~l~~~~~~~L~~~l~~~~~e~~G~~mif~lv~~lqe~L~e~  129 (137)
T d1ukxa_          62 YVQVELRVKCPPTYPDVVPEIDLKNAKGLSNESVNLLKSHLEELAKKQCGEVMIFELAHHVQSFLSEH  129 (137)
T ss_dssp             SCEEEEEECCCTTTTSSCCCCEEEEEESSSSSHHHHHHHHHHHHHHHHTTSCCHHHHHHHHHHHHHHH
T ss_pred             eEEEEEEEECCCCCCcccceEEEecCCCCCHHHHHHHHHHHHHHHHHcCCCEeHHHHHHHHHHHHHHh
Confidence            47899999999999999999999988999999999999999999999999999999999999999875

>d2dawa1 d.20.1.3 (A:8-148) RWD domain-containing protein 2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: RWD domain
domain: RWD domain-containing protein 2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.47  E-value=4.1e-14  Score=109.25  Aligned_cols=71  Identities=13%  Similarity=0.115  Sum_probs=64.8

Q ss_pred             ceEEEEEEEeCCCCCCCCCceEEecCCCCCHHhHHHHHHHHHHHHHHh-cCChHHHHHHHHHHHHHHHHhhcc
Q 028191           12 AVELALIFSHTEKYPDEPPLLNVKSLRGIQAGDLKILKEKLEQEASEN-LGMAMIYTLVTSAKEWLSERYSQD   83 (212)
Q Consensus        12 p~~l~L~f~~p~~YP~e~P~i~i~~~~gL~~~~l~~L~~~L~~~aeen-lGm~MIFtLve~lqE~L~e~~~~~   83 (212)
                      .+.+.|.|.+|++||.++|.+.+.+ .+++...+..|...|.+.++++ +|+||||+||+|||+++..++.+.
T Consensus        67 ~~~i~L~~~lp~~YP~~~P~i~~~~-~~l~~~~~~~l~~~l~~~~~e~~~Ge~mif~lv~~lqe~~~~~l~~~  138 (141)
T d2dawa1          67 KVKIDLQVTMPHSYPYLALQLFGRS-SELDRHQQLLLNKGLTSYIGTFDPGELCVCAAIQWLQDNSASYFLNR  138 (141)
T ss_dssp             TEEEEEEEEECSSTTSSCCEEEEEC-SSSCHHHHHHHHHHHHHHHTTSCTTSCSHHHHHHHHHHTTHHHHCCC
T ss_pred             cceEEEEEEeCCCCCCCCCCceeec-cccCHHHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHhhc
Confidence            3679999999999999999999987 7899999999999999999887 799999999999999998887653

>d2daxa1 d.20.1.3 (A:8-147) Uncharacterized protein C21orf6 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: RWD domain
domain: Uncharacterized protein C21orf6
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.43  E-value=1.7e-13  Score=105.17  Aligned_cols=72  Identities=21%  Similarity=0.181  Sum_probs=64.0

Q ss_pred             CceEEEEEEEeCCCCCCCCCceEEecCCCCCHHhHHHHHHHHHHHHHHh-cCChHHHHHHHHHHHHHHHHhhcc
Q 028191           11 FAVELALIFSHTEKYPDEPPLLNVKSLRGIQAGDLKILKEKLEQEASEN-LGMAMIYTLVTSAKEWLSERYSQD   83 (212)
Q Consensus        11 ~p~~l~L~f~~p~~YP~e~P~i~i~~~~gL~~~~l~~L~~~L~~~aeen-lGm~MIFtLve~lqE~L~e~~~~~   83 (212)
                      ..+.+.|+|++|++||.++|.|.+.+. +++......|.+.|...+.++ +|++|||.||+||||++..++.+.
T Consensus        64 ~~~~l~L~~~lP~~YP~~~P~i~l~~~-~l~~~~~~~l~~~l~~~~~~~~~Ge~~if~lve~lqe~~~~~~~~~  136 (140)
T d2daxa1          64 KMAMFSLACILPFKYPAVLPEITVRSV-LLSRSQQTQLNTDLTAFLQKHCHGDVCILNATEWVREHASGYVSRD  136 (140)
T ss_dssp             CEEEEEEEEEECSSTTSSCCCCEEECT-TSCHHHHHHHHHHHHHHHHHSSCSSCCSHHHHHHHHHHHHHHCCCC
T ss_pred             cCceEEEEEEecCcCCCcCCceeccCC-CCCHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHhccC
Confidence            356899999999999999999999875 788888889999998888776 699999999999999999988754

>d2a7la1 d.20.1.1 (A:1-117) Ubiquitin-protein ligase W (E2 W) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin-protein ligase W (E2 W)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=89.83  E-value=0.13  Score=36.83  Aligned_cols=24  Identities=21%  Similarity=0.549  Sum_probs=21.2

Q ss_pred             eEEEEEEEeCCCCCCCCCceEEec
Q 028191           13 VELALIFSHTEKYPDEPPLLNVKS   36 (212)
Q Consensus        13 ~~l~L~f~~p~~YP~e~P~i~i~~   36 (212)
                      ..+.+.|.+|++||..||.+.+..
T Consensus        52 g~f~~~i~fp~~YP~~pP~v~F~t   75 (117)
T d2a7la1          52 EKFQLLFKFSSRYPFDSPQVMFTG   75 (117)
T ss_dssp             CEEEEEEEECTTTTTSCCEEEEES
T ss_pred             CeeeEEEecCcccccCCCEEEEeC
Confidence            468899999999999999999864

>d2fo3a1 d.20.1.1 (A:9-117) Putative ubiquitin-conjugating enzyme, E2 domain {Plasmodium chabaudi [TaxId: 5825]}

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Putative ubiquitin-conjugating enzyme, E2 domain
species: Plasmodium chabaudi [TaxId: 5825]

Probab=89.65  E-value=0.13  Score=36.61  Aligned_cols=24  Identities=21%  Similarity=0.408  Sum_probs=21.1

Q ss_pred             eEEEEEEEeCCCCCCCCCceEEec
Q 028191           13 VELALIFSHTEKYPDEPPLLNVKS   36 (212)
Q Consensus        13 ~~l~L~f~~p~~YP~e~P~i~i~~   36 (212)
                      ..+.+.|.+|++||..||.+.+..
T Consensus        45 g~f~~~i~fp~~YP~~pP~v~F~t   68 (109)
T d2fo3a1          45 EVYKLKIIFPDDYPLKPPIVYFLQ   68 (109)
T ss_dssp             CEEEEEEECCTTTTTSCCEEEECS
T ss_pred             CCceEEEEeccccCCCCCeEEEEe
Confidence            367899999999999999999764

>d1zuoa1 d.20.1.1 (A:201-362) Ubiquitin-conjugating enzyme E2 Q2, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin-conjugating enzyme E2 Q2, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=87.37  E-value=0.19  Score=38.13  Aligned_cols=23  Identities=30%  Similarity=0.623  Sum_probs=20.8

Q ss_pred             EEEEEEeCCCCCCCCCceEEecC
Q 028191           15 LALIFSHTEKYPDEPPLLNVKSL   37 (212)
Q Consensus        15 l~L~f~~p~~YP~e~P~i~i~~~   37 (212)
                      +.|.|.+|++||..||.+.+...
T Consensus        68 ~~l~i~fp~~YP~~PP~v~f~t~   90 (162)
T d1zuoa1          68 ILLNFSFKDNFPFDPPFVRVVLP   90 (162)
T ss_dssp             EEEEEECCTTTTSSCCEEEEEES
T ss_pred             EEEEEECCCchhhhcceEEEEEE
Confidence            78889999999999999998864

>d1z2ua1 d.20.1.1 (A:1-147) Ubiquitin conjugating enzyme, UBC {Caenorhabditis elegans, E2 2 [TaxId: 6239]}

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Caenorhabditis elegans, E2 2 [TaxId: 6239]

Probab=87.26  E-value=0.23  Score=36.65  Aligned_cols=25  Identities=20%  Similarity=0.339  Sum_probs=22.1

Q ss_pred             eEEEEEEEeCCCCCCCCCceEEecC
Q 028191           13 VELALIFSHTEKYPDEPPLLNVKSL   37 (212)
Q Consensus        13 ~~l~L~f~~p~~YP~e~P~i~i~~~   37 (212)
                      ..+.+.|.+|++||..||.+.+...
T Consensus        48 g~f~~~i~fp~~YP~~pP~v~f~t~   72 (147)
T d1z2ua1          48 GVFFLTIHFPTDYPFKPPKVAFTTR   72 (147)
T ss_dssp             CEEEEEEECCTTTTSSCCEEEESSC
T ss_pred             CceEEEEecCcCCCCCCceEEEecC
Confidence            4688899999999999999998864

>d1c4zd_ d.20.1.1 (D:) Ubiquitin conjugating enzyme, UBC {Human (Homo sapiens), ubch7 [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Human (Homo sapiens), ubch7 [TaxId: 9606]

Probab=87.21  E-value=0.21  Score=36.93  Aligned_cols=61  Identities=11%  Similarity=0.189  Sum_probs=35.6

Q ss_pred             EEEEEEEeCCCCCCCCCceEEecC---CCCCHHhHHHHH-HHHHHHHHHhcCChHHHHHHHHHHHHHHH
Q 028191           14 ELALIFSHTEKYPDEPPLLNVKSL---RGIQAGDLKILK-EKLEQEASENLGMAMIYTLVTSAKEWLSE   78 (212)
Q Consensus        14 ~l~L~f~~p~~YP~e~P~i~i~~~---~gL~~~~l~~L~-~~L~~~aeenlGm~MIFtLve~lqE~L~e   78 (212)
                      .+.+.|.+|++||..||.+.+...   .++...-  .+. ..|..  +.....-.|.+|+..++..|.+
T Consensus        47 ~f~~~i~fp~~YP~~pP~v~f~t~i~HPnV~~~G--~icl~~l~~--~~w~p~~~i~~il~~i~~ll~~  111 (144)
T d1c4zd_          47 AFRIEINFPAEYPFKPPKITFKTKIYHPNIDEKG--QVCLPVISA--ENWKPATKTDQVIQSLIALVND  111 (144)
T ss_dssp             CEEEEEECCTTTTTSCCEEEESSCCCCTTBCTTC--BBCCTTTSS--SSCCTTCCHHHHHHHHHHHHHS
T ss_pred             EEEEEEEecCcccCCCceeeccCCCCCcCCccCC--ccccccccC--CCCCCcccHHHHHHHHHHHHhC
Confidence            578899999999999999998764   2332110  000 00100  1122233577788777777643

>d2f4wa1 d.20.1.1 (A:12-168) Ubiquitin conjugating enzyme, UBC {Human (Homo sapiens), E2 J2 [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Human (Homo sapiens), E2 J2 [TaxId: 9606]

Probab=86.73  E-value=0.18  Score=37.98  Aligned_cols=25  Identities=12%  Similarity=0.150  Sum_probs=22.3

Q ss_pred             eEEEEEEEeCCCCCCCCCceEEecC
Q 028191           13 VELALIFSHTEKYPDEPPLLNVKSL   37 (212)
Q Consensus        13 ~~l~L~f~~p~~YP~e~P~i~i~~~   37 (212)
                      ..+.++|.+|++||..||.+.+...
T Consensus        48 g~f~~~i~fp~~YP~~pP~v~f~t~   72 (157)
T d2f4wa1          48 GYYHGKLIFPREFPFKPPSIYMITP   72 (157)
T ss_dssp             CEEEEEEECCTTTTSSCCEEEECSC
T ss_pred             CEEEEEEeccCCcCCCCCEEEeeCC
Confidence            4689999999999999999998864

>d2awfa1 d.20.1.1 (A:7-131) Ubiquitin conjugating enzyme, UBC {Human (Homo sapiens), E2 G1 [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Human (Homo sapiens), E2 G1 [TaxId: 9606]

Probab=86.47  E-value=0.28  Score=35.46  Aligned_cols=25  Identities=16%  Similarity=0.313  Sum_probs=21.9

Q ss_pred             eEEEEEEEeCCCCCCCCCceEEecC
Q 028191           13 VELALIFSHTEKYPDEPPLLNVKSL   37 (212)
Q Consensus        13 ~~l~L~f~~p~~YP~e~P~i~i~~~   37 (212)
                      ..+.+.|.+|++||..||.+.+...
T Consensus        47 g~f~~~i~fp~~YP~~pP~v~f~t~   71 (125)
T d2awfa1          47 GVFKAHLTFPKDYPLRPPKMKFITE   71 (125)
T ss_dssp             CEEEEEEECCTTTTSSCCEEEECSC
T ss_pred             CeeEEEEecCCCcCCCCCeEEecCC
Confidence            4688999999999999999998754

>d2ucza_ d.20.1.1 (A:) Ubiquitin conjugating enzyme, UBC {Baker's yeast (Saccharomyces cerevisiae), ubc7 [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Baker's yeast (Saccharomyces cerevisiae), ubc7 [TaxId: 4932]

Probab=85.94  E-value=0.29  Score=36.87  Aligned_cols=25  Identities=20%  Similarity=0.332  Sum_probs=21.8

Q ss_pred             eEEEEEEEeCCCCCCCCCceEEecC
Q 028191           13 VELALIFSHTEKYPDEPPLLNVKSL   37 (212)
Q Consensus        13 ~~l~L~f~~p~~YP~e~P~i~i~~~   37 (212)
                      ..+.+.|.+|++||..||.+.+...
T Consensus        51 g~f~~~i~fp~~YP~~pP~v~f~t~   75 (164)
T d2ucza_          51 GVFNAKLEFPKDYPLSPPKLTFTPS   75 (164)
T ss_dssp             CEEEEEEECCTTTTTSCCEEEESSC
T ss_pred             CeeEEEEecCCCCCCCCCeEEeecC
Confidence            4688999999999999999998654

>d1wzva1 d.20.1.1 (A:2-151) Ubiquitin conjugating enzyme, UBC {Human (Homo sapiens), E2 L6 [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Human (Homo sapiens), E2 L6 [TaxId: 9606]

Probab=85.83  E-value=0.3  Score=36.26  Aligned_cols=25  Identities=24%  Similarity=0.518  Sum_probs=22.0

Q ss_pred             eEEEEEEEeCCCCCCCCCceEEecC
Q 028191           13 VELALIFSHTEKYPDEPPLLNVKSL   37 (212)
Q Consensus        13 ~~l~L~f~~p~~YP~e~P~i~i~~~   37 (212)
                      ..+.+.|.+|++||..||.+.+...
T Consensus        47 g~f~~~i~fp~~YP~~pP~v~f~t~   71 (150)
T d1wzva1          47 KAFNLRISFPPEYPFKPPMIKFTTK   71 (150)
T ss_dssp             EEEEEEEECCTTTTSSCCEEEESSC
T ss_pred             ceeeEEEecCcCCccCCceeeccCC
Confidence            3688999999999999999998864

>d1yh2a1 d.20.1.1 (A:1-154) Ubiquitin conjugating enzyme, UBC {Human (Homo sapiens), E2 T [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Human (Homo sapiens), E2 T [TaxId: 9606]

Probab=85.57  E-value=0.31  Score=36.20  Aligned_cols=25  Identities=28%  Similarity=0.382  Sum_probs=22.2

Q ss_pred             eEEEEEEEeCCCCCCCCCceEEecC
Q 028191           13 VELALIFSHTEKYPDEPPLLNVKSL   37 (212)
Q Consensus        13 ~~l~L~f~~p~~YP~e~P~i~i~~~   37 (212)
                      ..+.+.|.+|++||..||.+.+...
T Consensus        49 g~f~~~i~~p~~YP~~pP~v~f~t~   73 (154)
T d1yh2a1          49 GVFKLEVIIPERYPFEPPQIRFLTP   73 (154)
T ss_dssp             CEEEEEEECCTTTTSSCCEEEESSC
T ss_pred             CEEEEEEecCccccCCCceeeccCC
Confidence            4688999999999999999998865

>d2bepa1 d.20.1.1 (A:1-154) Ubiquitin-conjugating enzyme E2-25 kDa, E2 domain {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin-conjugating enzyme E2-25 kDa, E2 domain
species: Cow (Bos taurus) [TaxId: 9913]

Probab=85.30  E-value=0.32  Score=36.30  Aligned_cols=62  Identities=19%  Similarity=0.217  Sum_probs=35.9

Q ss_pred             EEEEEEEeCCCCCCCCCceEEecC---CCCCHHhHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHH
Q 028191           14 ELALIFSHTEKYPDEPPLLNVKSL---RGIQAGDLKILKEKLEQEASENLGMAMIYTLVTSAKEWLSE   78 (212)
Q Consensus        14 ~l~L~f~~p~~YP~e~P~i~i~~~---~gL~~~~l~~L~~~L~~~aeenlGm~MIFtLve~lqE~L~e   78 (212)
                      .+.+.|.+|++||..||.|.+...   +|+....-......+.   +.....--|.+|+.+|+..|.+
T Consensus        55 ~f~~~i~fp~~YP~~pP~v~f~t~i~Hpni~~~~g~ic~~~~~---~~W~p~~~i~~il~~i~~ll~~  119 (154)
T d2bepa1          55 RYQLEIKIPETYPFNPPKVRFITKIWHPNISSVTGAICLDILK---DQWAAAMTLRTVLLSLQALLAA  119 (154)
T ss_dssp             EEEEEEECCTTTTSSCCEEEESSCCCBTTBCTTTCBBCCGGGT---TTCCTTCCHHHHHHHHHHHHHS
T ss_pred             eeEEEEeccccccCCCCcceecccCCCCCeeCCCCcccccccc---ccCCCcCCHHHHHHHHHHHHcC
Confidence            578899999999999999998865   2332110000001111   1122222377777777777653

>d1yf9a1 d.20.1.1 (A:13-170) Ubiquitin conjugating enzyme, UBC {Leishmania major [TaxId: 5664]}

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Leishmania major [TaxId: 5664]

Probab=85.11  E-value=0.31  Score=36.80  Aligned_cols=25  Identities=16%  Similarity=0.181  Sum_probs=22.1

Q ss_pred             eEEEEEEEeCCCCCCCCCceEEecC
Q 028191           13 VELALIFSHTEKYPDEPPLLNVKSL   37 (212)
Q Consensus        13 ~~l~L~f~~p~~YP~e~P~i~i~~~   37 (212)
                      ..+.+.|.+|++||..+|.+.+...
T Consensus        43 g~f~~~i~fp~~YP~~pP~v~F~t~   67 (158)
T d1yf9a1          43 GTWMLHVQLPSDYPFKSPSIGFCNR   67 (158)
T ss_dssp             CEEEEEEECCTTTTTSCCEEEESSC
T ss_pred             cEEEEEEECcccchhhceeEEecCC
Confidence            4678999999999999999998864

>d1ayza_ d.20.1.1 (A:) Ubiquitin conjugating enzyme, UBC {Baker's yeast (Saccharomyces cerevisiae), ubc2 (RAD6) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Baker's yeast (Saccharomyces cerevisiae), ubc2 (RAD6) [TaxId: 4932]

Probab=85.07  E-value=0.34  Score=35.84  Aligned_cols=25  Identities=28%  Similarity=0.584  Sum_probs=21.7

Q ss_pred             eEEEEEEEeCCCCCCCCCceEEecC
Q 028191           13 VELALIFSHTEKYPDEPPLLNVKSL   37 (212)
Q Consensus        13 ~~l~L~f~~p~~YP~e~P~i~i~~~   37 (212)
                      ..+.+.|.+|++||..+|.+.+...
T Consensus        50 g~f~~~i~~p~~YP~~pP~v~f~t~   74 (153)
T d1ayza_          50 GTFRLLLEFDEEYPNKPPHVKFLSE   74 (153)
T ss_dssp             CEEEEEEECCTTTTTSCCEEEESSC
T ss_pred             CEEEEEEecCccccCCCCeeeeccC
Confidence            3578899999999999999998764

>d2f4za1 d.20.1.1 (A:32-192) Hypothetical protein Tgtwinscan_2721, E2 domain {Toxoplasma gondii [TaxId: 5811]}

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Hypothetical protein Tgtwinscan 2721, E2 domain
species: Toxoplasma gondii [TaxId: 5811]

Probab=85.00  E-value=0.34  Score=36.68  Aligned_cols=25  Identities=20%  Similarity=0.345  Sum_probs=21.8

Q ss_pred             eEEEEEEEeCCCCCCCCCceEEecC
Q 028191           13 VELALIFSHTEKYPDEPPLLNVKSL   37 (212)
Q Consensus        13 ~~l~L~f~~p~~YP~e~P~i~i~~~   37 (212)
                      ..+.|.|.+|++||..+|.|.+...
T Consensus        61 g~f~~~i~fp~~YP~~pP~V~F~t~   85 (161)
T d2f4za1          61 GHFTLDIVIPPDYPYNPPKMKFVTK   85 (161)
T ss_dssp             CEEEEEEECCTTTTTSCCEEEESSC
T ss_pred             CEEEEEEeccCCCCCCCcEEEecCC
Confidence            3678899999999999999998754

>d1jatb_ d.20.1.1 (B:) Ubiquitin conjugating enzyme, UBC {Baker's yeast (Saccharomyces cerevisiae), mms2 [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Baker's yeast (Saccharomyces cerevisiae), mms2 [TaxId: 4932]

Probab=84.78  E-value=0.44  Score=35.23  Aligned_cols=25  Identities=28%  Similarity=0.425  Sum_probs=22.3

Q ss_pred             eEEEEEEEeCCCCCCCCCceEEecC
Q 028191           13 VELALIFSHTEKYPDEPPLLNVKSL   37 (212)
Q Consensus        13 ~~l~L~f~~p~~YP~e~P~i~i~~~   37 (212)
                      ..+.+.+.+|++||..||.|.+...
T Consensus        55 g~f~~~i~fp~~YP~~PP~v~f~t~   79 (136)
T d1jatb_          55 RIYSLSIDCGPNYPDSPPKVTFISK   79 (136)
T ss_dssp             CEEEEEEECCTTTTTSCCEEEESBC
T ss_pred             CEEEEEEEecCCCCCCCCEEEEecc
Confidence            4688999999999999999998874

>d1j7db_ d.20.1.1 (B:) Ubiquitin conjugating enzyme, UBC {Human (Homo sapiens), ubc13 [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Human (Homo sapiens), ubc13 [TaxId: 9606]

Probab=84.69  E-value=0.37  Score=35.75  Aligned_cols=25  Identities=20%  Similarity=0.270  Sum_probs=21.8

Q ss_pred             eEEEEEEEeCCCCCCCCCceEEecC
Q 028191           13 VELALIFSHTEKYPDEPPLLNVKSL   37 (212)
Q Consensus        13 ~~l~L~f~~p~~YP~e~P~i~i~~~   37 (212)
                      ..+.+.|.+|++||..+|.+.+...
T Consensus        49 g~f~~~i~fp~~YP~~pP~v~f~t~   73 (149)
T d1j7db_          49 GTFKLELFLPEEYPMAAPKVRFMTK   73 (149)
T ss_dssp             CEEEEEEECCTTTTTSCCEEEECSC
T ss_pred             CEEEEEEecCCcccCCCceeeecCC
Confidence            3578899999999999999998864

>d1yrva1 d.20.1.1 (A:1-148) Ubiquitin conjugating enzyme, UBC {Human (Homo sapiens), E2 U [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Human (Homo sapiens), E2 U [TaxId: 9606]

Probab=84.31  E-value=0.31  Score=36.44  Aligned_cols=64  Identities=13%  Similarity=0.183  Sum_probs=37.5

Q ss_pred             eEEEEEEEeCCCCCCCCCceEEecC---CCCCHHhHHHH-HHHHHHHHHHhcCChHHHHHHHHHHHHHHH
Q 028191           13 VELALIFSHTEKYPDEPPLLNVKSL---RGIQAGDLKIL-KEKLEQEASENLGMAMIYTLVTSAKEWLSE   78 (212)
Q Consensus        13 ~~l~L~f~~p~~YP~e~P~i~i~~~---~gL~~~~l~~L-~~~L~~~aeenlGm~MIFtLve~lqE~L~e   78 (212)
                      ..+.+.|.+|++||..||.+.+...   .++....- .+ ...|. ..+..--.-.|.+|+.+|+..|.+
T Consensus        51 g~f~~~i~fp~~YP~~pP~v~f~t~i~HpnV~~~~G-~iC~~~l~-~~~~W~p~~tl~~vL~~I~~ll~~  118 (148)
T d1yrva1          51 LVFQLTIHFTSEYNYAPPVVKFITIPFHPNVDPHTG-QPCIDFLD-NPEKWNTNYTLSSILLALQVMLSN  118 (148)
T ss_dssp             CEEEEEEECCTTBTTBCCEEEESSCCCCTTBCTTTC-CBCCHHHH-CGGGCCTTCCHHHHHHHHHHHHTS
T ss_pred             CceEEEEEeccccccCCceeeeccccccCceecCcc-cccccccC-chhhcCccccHHHHHHHHHHHHhC
Confidence            4678999999999999999998764   23321100 00 01111 112222223388888888877743

>d2in1a1 d.20.1.4 (A:3-164) Ufm1-conjugating enzyme 1, UFC1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UFC1-like
domain: Ufm1-conjugating enzyme 1, UFC1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=83.57  E-value=0.32  Score=36.95  Aligned_cols=27  Identities=30%  Similarity=0.535  Sum_probs=23.5

Q ss_pred             eEEEEEEEeCCCCCCCCCceEEecCCC
Q 028191           13 VELALIFSHTEKYPDEPPLLNVKSLRG   39 (212)
Q Consensus        13 ~~l~L~f~~p~~YP~e~P~i~i~~~~g   39 (212)
                      ..+.|.|..|.+||.++|.|.|-...|
T Consensus        76 YeFd~eFdIP~tYP~t~pEi~lPeLdG  102 (162)
T d2in1a1          76 YEFDIEFDIPITYPTTAPEIAVPELDG  102 (162)
T ss_dssp             EEEEEEEECCTTTTTSCCCCBCGGGSS
T ss_pred             EEEEEEeccCCCCCCCCcceeccccCC
Confidence            468899999999999999999876554

>d2a4da1 d.20.1.1 (A:82-220) Ubiquitin conjugating enzyme, UBC {Human (Homo sapiens), E2 variant 1 [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Human (Homo sapiens), E2 variant 1 [TaxId: 9606]

Probab=83.32  E-value=0.57  Score=34.59  Aligned_cols=25  Identities=24%  Similarity=0.468  Sum_probs=21.8

Q ss_pred             eEEEEEEEeCCCCCCCCCceEEecC
Q 028191           13 VELALIFSHTEKYPDEPPLLNVKSL   37 (212)
Q Consensus        13 ~~l~L~f~~p~~YP~e~P~i~i~~~   37 (212)
                      ..+.+.|.+|++||..||.+.+...
T Consensus        56 g~f~~~i~fp~~YP~~pP~v~F~t~   80 (139)
T d2a4da1          56 RIYSLKIECGPKYPEAPPFVRFVTK   80 (139)
T ss_dssp             CEEEEEEECCTTTTTSCCEEEESBC
T ss_pred             CEEEEEEECCCCCCCCCCEEEEecC
Confidence            3678899999999999999998764

>d1y8xa1 d.20.1.1 (A:27-183) Ubiquitin conjugating enzyme, UBC {Human (Homo sapiens), E2 M [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Human (Homo sapiens), E2 M [TaxId: 9606]

Probab=83.28  E-value=0.42  Score=35.96  Aligned_cols=25  Identities=20%  Similarity=0.594  Sum_probs=21.6

Q ss_pred             eEEEEEEEeCCCCCCCCCceEEecC
Q 028191           13 VELALIFSHTEKYPDEPPLLNVKSL   37 (212)
Q Consensus        13 ~~l~L~f~~p~~YP~e~P~i~i~~~   37 (212)
                      ..+.+.|.+|++||..||.+.+...
T Consensus        48 g~f~~~i~fp~~YP~~pP~V~f~t~   72 (157)
T d1y8xa1          48 GKFVFSFKVGQGYPHDPPKVKCETM   72 (157)
T ss_dssp             BCEEEEEECCTTTTTSCCEEEECSC
T ss_pred             CeEEEEEEecCCCCCCCceeeeccc
Confidence            4678888999999999999998764

>d1i7ka_ d.20.1.1 (A:) Ubiquitin conjugating enzyme, UBC {Human (Homo sapiens), ubch10 [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Human (Homo sapiens), ubch10 [TaxId: 9606]

Probab=83.20  E-value=0.46  Score=35.23  Aligned_cols=25  Identities=16%  Similarity=0.337  Sum_probs=22.0

Q ss_pred             eEEEEEEEeCCCCCCCCCceEEecC
Q 028191           13 VELALIFSHTEKYPDEPPLLNVKSL   37 (212)
Q Consensus        13 ~~l~L~f~~p~~YP~e~P~i~i~~~   37 (212)
                      ..+.+.|.+|++||..+|.+.+...
T Consensus        48 g~f~~~i~fp~~YP~~pP~v~f~t~   72 (146)
T d1i7ka_          48 LRYKLSLEFPSGYPYNAPTVKFLTP   72 (146)
T ss_dssp             CEEEEEEECCTTTTTSCCEEEESSC
T ss_pred             CEEEEEEEecCCCCcCCceeeecCC
Confidence            3688999999999999999998864

>d2uyza1 d.20.1.1 (A:3-158) Ubiquitin conjugating enzyme, UBC {Human (Homo sapiens), ubc9 [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Human (Homo sapiens), ubc9 [TaxId: 9606]

Probab=83.09  E-value=0.43  Score=35.79  Aligned_cols=25  Identities=20%  Similarity=0.371  Sum_probs=22.0

Q ss_pred             eEEEEEEEeCCCCCCCCCceEEecC
Q 028191           13 VELALIFSHTEKYPDEPPLLNVKSL   37 (212)
Q Consensus        13 ~~l~L~f~~p~~YP~e~P~i~i~~~   37 (212)
                      ..+.+.|.+|++||..||.|.+...
T Consensus        54 g~f~~~i~fp~~YP~~pP~v~f~t~   78 (156)
T d2uyza1          54 GLFKLRMLFKDDYPSSPPKCKFEPP   78 (156)
T ss_dssp             CEEEEEEECCTTTTSSCCEEEESSC
T ss_pred             CEEEEEEeCCccccCCCceeeeccc
Confidence            4688999999999999999998864

>d2e2ca_ d.20.1.1 (A:) Ubiquitin conjugating enzyme, UBC {Clam (Spisula solidissima), E-2C [TaxId: 6584]}

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Clam (Spisula solidissima), E-2C [TaxId: 6584]

Probab=82.96  E-value=0.46  Score=35.64  Aligned_cols=25  Identities=20%  Similarity=0.557  Sum_probs=22.1

Q ss_pred             eEEEEEEEeCCCCCCCCCceEEecC
Q 028191           13 VELALIFSHTEKYPDEPPLLNVKSL   37 (212)
Q Consensus        13 ~~l~L~f~~p~~YP~e~P~i~i~~~   37 (212)
                      ..+.|.|.+|++||..||.|.+...
T Consensus        56 g~f~~~i~fp~~YP~~pP~v~f~t~   80 (156)
T d2e2ca_          56 LKYKLTLEFPSDYPYKPPVVKFTTP   80 (156)
T ss_dssp             CEEEEEEECCTTTTSSCCEEEESSC
T ss_pred             CEEEEEEEecCCCCCCCceeecccc
Confidence            4678999999999999999998864

>d1z3da1 d.20.1.1 (A:2-150) Ubiquitin conjugating enzyme, UBC {Nematode (Caenorhabditis elegans), E2-21.5 kDa [TaxId: 6239]}

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Nematode (Caenorhabditis elegans), E2-21.5 kDa [TaxId: 6239]

Probab=82.94  E-value=0.48  Score=35.06  Aligned_cols=24  Identities=33%  Similarity=0.646  Sum_probs=21.5

Q ss_pred             EEEEEEEeCCCCCCCCCceEEecC
Q 028191           14 ELALIFSHTEKYPDEPPLLNVKSL   37 (212)
Q Consensus        14 ~l~L~f~~p~~YP~e~P~i~i~~~   37 (212)
                      .+.+.|.+|++||..||.+.+...
T Consensus        51 ~f~~~i~~p~~YP~~pP~v~f~t~   74 (149)
T d1z3da1          51 TFKLSLEFTEEYPNKPPTVKFISK   74 (149)
T ss_dssp             EEEEEEECCTTTTTSCCEEEESSC
T ss_pred             EEEEEEEecCcCCCCCcEEEecCc
Confidence            578899999999999999998865

>d1pzva_ d.20.1.1 (A:) Ubiquitin conjugating enzyme, UBC {Nematode (Caenorhabditis elegans), E2-19 kDa [TaxId: 6239]}

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Nematode (Caenorhabditis elegans), E2-19 kDa [TaxId: 6239]

Probab=82.75  E-value=0.34  Score=36.38  Aligned_cols=25  Identities=24%  Similarity=0.430  Sum_probs=22.0

Q ss_pred             eEEEEEEEeCCCCCCCCCceEEecC
Q 028191           13 VELALIFSHTEKYPDEPPLLNVKSL   37 (212)
Q Consensus        13 ~~l~L~f~~p~~YP~e~P~i~i~~~   37 (212)
                      ..+.+.|.+|++||..||.|.+...
T Consensus        48 g~f~~~i~fp~~YP~~pP~v~f~t~   72 (161)
T d1pzva_          48 GFFKAILDFPRDYPQKPPKMKFISE   72 (161)
T ss_dssp             CEEEEEEECCTTGGGSCCEEEECSC
T ss_pred             CEEEEEEeCCCCCCCCCCeEEecCC
Confidence            3688999999999999999998864

>d1fzya_ d.20.1.1 (A:) Ubiquitin conjugating enzyme, UBC {Baker's yeast (Saccharomyces cerevisiae), ubc1 [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Baker's yeast (Saccharomyces cerevisiae), ubc1 [TaxId: 4932]

Probab=82.21  E-value=0.49  Score=34.92  Aligned_cols=25  Identities=16%  Similarity=0.337  Sum_probs=21.8

Q ss_pred             eEEEEEEEeCCCCCCCCCceEEecC
Q 028191           13 VELALIFSHTEKYPDEPPLLNVKSL   37 (212)
Q Consensus        13 ~~l~L~f~~p~~YP~e~P~i~i~~~   37 (212)
                      ..+.+.|.+|++||..||.+.+...
T Consensus        49 g~f~~~i~fp~~YP~~pP~v~f~t~   73 (149)
T d1fzya_          49 GKFVVDIEVPMEYPFKPPKMQFDTK   73 (149)
T ss_dssp             CEEEEEEECCTTTTSSCCEEEESSC
T ss_pred             CceeEEEEecCCcccCCcEEEecCC
Confidence            4688899999999999999998764

>d1s1qa_ d.20.1.2 (A:) Tumor susceptibility gene 101 (TSG101) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UEV domain
domain: Tumor susceptibility gene 101 (TSG101)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=81.72  E-value=0.69  Score=34.07  Aligned_cols=23  Identities=26%  Similarity=0.550  Sum_probs=19.3

Q ss_pred             EEEEEEEeCCCCCCCCCceEEec
Q 028191           14 ELALIFSHTEKYPDEPPLLNVKS   36 (212)
Q Consensus        14 ~l~L~f~~p~~YP~e~P~i~i~~   36 (212)
                      .+.+.|.+|++||..||.+.+..
T Consensus        67 ~~pi~i~~p~~YP~~pP~v~~~p   89 (141)
T d1s1qa_          67 NIPICLWLLDTYPYNPPICFVKP   89 (141)
T ss_dssp             EEEEEEEECTTTTSSCCEEEECC
T ss_pred             EEEEEEECCccCCCCCCEEEEec
Confidence            45568889999999999998864

>d1y6la_ d.20.1.1 (A:) Ubiquitin conjugating enzyme, UBC {Human (Homo sapiens), ubch8 [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Human (Homo sapiens), ubch8 [TaxId: 9606]

Probab=81.36  E-value=0.55  Score=34.59  Aligned_cols=25  Identities=20%  Similarity=0.377  Sum_probs=21.6

Q ss_pred             eEEEEEEEeCCCCCCCCCceEEecC
Q 028191           13 VELALIFSHTEKYPDEPPLLNVKSL   37 (212)
Q Consensus        13 ~~l~L~f~~p~~YP~e~P~i~i~~~   37 (212)
                      ..+.+.|.+|++||..||.+.+...
T Consensus        49 g~f~~~i~~p~~YP~~pP~v~f~t~   73 (148)
T d1y6la_          49 GVFFLDITFSPDYPFKPPKVTFRTR   73 (148)
T ss_dssp             CEEEEEEECCTTTTSSCCEEEESSC
T ss_pred             CeEEEEEecCcccCCCCcEEEEeCC
Confidence            3578888999999999999998864

>d1jata_ d.20.1.1 (A:) Ubiquitin conjugating enzyme, UBC {Baker's yeast (Saccharomyces cerevisiae), ubc13 [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Baker's yeast (Saccharomyces cerevisiae), ubc13 [TaxId: 4932]

Probab=81.30  E-value=0.57  Score=34.88  Aligned_cols=62  Identities=19%  Similarity=0.167  Sum_probs=36.8

Q ss_pred             eEEEEEEEeCCCCCCCCCceEEecC---CCCCHHhHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHH
Q 028191           13 VELALIFSHTEKYPDEPPLLNVKSL---RGIQAGDLKILKEKLEQEASENLGMAMIYTLVTSAKEWLSE   78 (212)
Q Consensus        13 ~~l~L~f~~p~~YP~e~P~i~i~~~---~gL~~~~l~~L~~~L~~~aeenlGm~MIFtLve~lqE~L~e   78 (212)
                      ..+.+.|.+|++||..+|.+.+...   .++...-. .....+.   ......--|.+|+..|+..|.+
T Consensus        50 g~f~~~i~fp~~YP~~pP~v~F~t~i~HPnI~~~G~-icl~~~~---~~W~p~~~i~~il~~i~~ll~~  114 (152)
T d1jata_          50 GIFELELYLPDDYPMEAPKVRFLTKIYHPNIDRLGR-ICLDVLK---TNWSPALQIRTVLLSIQALLAS  114 (152)
T ss_dssp             EEEEEEEECCTTTTTSCCEEEECSCCCBTTBCTTCC-BCCGGGT---TTCCTTCCHHHHHHHHHHHHHS
T ss_pred             CEEEEEEecCccCCCCCcEEEecCCCCCCcCCCCCC-eeecccc---ccCCchhHHHHHHHHHHHHHcC
Confidence            4688999999999999999998865   33322100 0000111   1122222367788888777754

>d1zdna1 d.20.1.1 (A:6-156) Ubiquitin conjugating enzyme, UBC {Human(Homo sapiens), E2 S [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Human(Homo sapiens), E2 S [TaxId: 9606]

Probab=81.19  E-value=0.57  Score=34.89  Aligned_cols=61  Identities=15%  Similarity=0.101  Sum_probs=36.3

Q ss_pred             eEEEEEEEeCCCCCCCCCceEEecC---CCCCHHhHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHH
Q 028191           13 VELALIFSHTEKYPDEPPLLNVKSL---RGIQAGDLKILKEKLEQEASENLGMAMIYTLVTSAKEWLS   77 (212)
Q Consensus        13 ~~l~L~f~~p~~YP~e~P~i~i~~~---~gL~~~~l~~L~~~L~~~aeenlGm~MIFtLve~lqE~L~   77 (212)
                      ..+.+.|.+|++||..+|.+.+.+.   .++... -..-...+..   .....--|.+|+..++..|.
T Consensus        53 g~f~~~i~fp~~YP~~pP~v~f~t~i~HPnI~~~-G~ic~~~l~~---~W~p~~~l~~il~~i~~~l~  116 (151)
T d1zdna1          53 GLFRMKLLLGKDFPASPPKGYFLTKIFHPNVGAN-GEICVNVLKR---DWTAELGIRHVLLTIKCLLI  116 (151)
T ss_dssp             CEEEEEEECCTTTTTSCCEEEESSCCCCTTBCTT-SBBCHHHHTT---TCCTTCCHHHHHHHHHHHHH
T ss_pred             CceeeeeecCCCCCCCCceeecCCCCCCceecCC-CCcccccccc---cCCccccHHHHHHHHHHHHh
Confidence            4578889999999999999998864   233221 0000111211   22222236777777777764