Citrus Sinensis ID: 028195

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210--
Protein Sequence
MKVGPVGFCIAAILAFIFSPQAVYGIRFVIDREECFSHNVQYEGDTVHASFVVIKADSSWYSSHDGVDLVVKGPASDQIHDFRDKISEKFEFVAHHKGVHRFCFTNKSPYHETIDFDVHVGHFSYYDEHAKDEHFNPLLEQISKLEEALYNIQFEQHWLEAQTERQAIVNEAMSRRAVYKAFWESTALVGASVLQVYLLRRLFERKLGMSRV
Secondary Structure (PSIPRED)
ccccHHHHHHHHHHHHHHHccEEEEEEEEcccccEEEEEccccccEEEEEEEEEEcccccccccccEEEEEEcccccEEEEEEcccccEEEEEEcccEEEEEEcccccccEEEEEEEEEEccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccc
Secondary Structure Prediction (SSPRO)
ccccHHHHHHHHHHHHHHHHHHccEEEEcccccEcEEEEEEEcccEEEEEEEEEEccccccccccccEEEEEcccccEEEEEEEEcccEEEEEEccccEEEEEEcccccccEEEEEEEEEccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccc
Coil and Loop (DISEMBL)
MKVGPVGFCIAAILAFIFspqavygirfvidreecfshnvqyegdtvHASFVVIKadsswysshdgvdlvvkgpasdqihDFRDKISEKFEFVahhkgvhrfcftnkspyhetidfdvhvghfsyydehakdehfnpLLEQISKLEEALYNIQFEQHWLEAQTERQAIVNEAMSRRAVYKAFWESTALVGASVLQVYLLRRLFERKLGMSRV
Flexible Loop (DISEMBL)
MKVGPVGFCIAAILAFIFSPQAVYGIRFVIDREECFSHNVQYEGDTVHASFVVIKADSSWYSSHDGVDLVVKGPASDQIHDFRDKISEKFEFVAHHKGVHRFCFTNKSPYHETIDFDVHVGHFSYYDEHAKDEHFNPLLEQISKLEEALYNIQFEQHWLEAQTERQAIVNEAMSRRAVYKAFWESTALVGASVLQVYLLRRLferklgmsrv
Low Complexity Region (SEG)
MKVGPVGFCIAAILAFIFSPQAVYGIRFVIDREECFSHNVQYEGDTVHASFVVIKADSSWYSSHDGVDLVVKGPASDQIHDFRDKISEKFEFVAHHKGVHRFCFTNKSPYHETIDFDVHVGHFSYYDEHAKDEHFNPLLEQISKLEEALYNIQFEQHWLEAQTERQAIVNEAMSRRAVYKAFWESTALVGASVLQVYLLRRLFERKLGMSRV
Disordered region (IsUnstruct)
****PVGFCIAAILAFIFSPQAVYGIRFVIDREECFSHNVQYEGDTVHASFVVIKADSSWYSSHDGVDLVVKGPASDQIHDFRDKISEKFEFVAHHKGVHRFCFTNKSPYHETIDFDVHVGHFSYYDEHAKDEHFNPLLEQISKLEEALYNIQFEQHWLEAQTERQAIVNEAMSRRAVYKAFWESTALVGASVLQVYLLRRLFER*******
Disordered Region (DISOPRED)
*****VGFCIAAILAFIFSPQAVYGIRFVIDREECFSHNVQYEGDTVHASFVVIKADSSWYSSHDGVDLVVKGPASDQIHDF*DKISEKFEFVAHHKGVHRFCFTNKSPYHETIDFDVHVGHFSYY**********PLLEQISKLEEALYNIQFEQHWLEAQTERQAIVNEAMSRRAVYKAFWESTALVGASVLQVYLLRRLFERKLGMS**
Disordered Region (DISEMBL)
MKVGPVGFCIAAILAFIFSPQAVYGIRFVIDREECFSHNVQYEGDTVHASFVVIKADSSWYSSHDGVDLVVKGPASDQIHDFRDKISEKFEFVAHHKGVHRFCFTNKSPYHETIDFDVHVGHFSYYDEHAKDEHFNPLLEQISKLEEALYNIQFEQHWLEAQTERQAIVNEAMSRRAVYKAFWESTALVGASVLQVYLLRRLFERKLGMSRV
Disordered Region (DISPRO)
*KVGPVGFCIAAILAFIFSPQAVYGIRFVIDREECFSHNVQYEGDTVHASFVVIKADSSWYSSHDGVDLVVKGPASDQIHDFRDKISEKFEFVAHHKGVHRFCFTNKSPYHETIDFDVHVGHFSYYDEHAKDEHFNPLLEQISKLEEALYNIQFEQHWLEAQTERQAIVNEAMSRRAVYKAFWESTALVGASVLQVYLLRRLFERKL*****
Transmembrane Helix (TMHMM)
oooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (HMMTOP)
iiiiiHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHooooooooooo
TM Helix, Signal Peptide (Phobius)
SSSSSSSSSSSSSSSSSSSSSSSSSoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
SSSSSSSSSSSSSSSSSSSSSSSSSSoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MKVGPVGFCIAAILAFIFSPQAVYGIRFVIDREECFSHNVQYEGDTVHASFVVIKADSSWYSSHDGVDLVVKGPASDQIHDFRDKISEKFEFVAHHKGVHRFCFTNKSPYHETIDFDVHVGHFSYYDEHAKDEHFNPLLEQISKLEEALYNIQFEQHWLEAQTERQAIVNEAMSRRAVYKAFWESTALVGASVLQVYLLRRLFERKLGMSRV
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	212	2.2.26 [Sep-21-2011]
Q9S7M9	208	Transmembrane emp24 domai	yes	no	0.943	0.961	0.76	1e-88
Q9LIL4	214	Transmembrane emp24 domai	no	no	0.938	0.929	0.361	1e-32
A7SXK3	203	Transmembrane emp24 domai	N/A	no	0.882	0.921	0.277	2e-14
Q63524	201	Transmembrane emp24 domai	yes	no	0.650	0.686	0.278	3e-13
Q15363	201	Transmembrane emp24 domai	yes	no	0.650	0.686	0.278	3e-13
Q9R0Q3	201	Transmembrane emp24 domai	yes	no	0.650	0.686	0.278	3e-13
P49020	196	Transmembrane emp24 domai	yes	no	0.650	0.704	0.278	3e-13
O17528	203	Suppressor/enhancer of li	yes	no	0.872	0.911	0.281	1e-11
Q769F9	205	Transmembrane emp24 domai	yes	no	0.514	0.531	0.306	3e-09
Q9P7I9	199	Endosomal protein P24B OS	yes	no	0.886	0.944	0.219	1e-07

>sp|Q9S7M9|P24B2_ARATH Transmembrane emp24 domain-containing protein p24beta2 OS=Arabidopsis thaliana GN=At3g07680 PE=1 SV=1

 Score =  325 bits (834), Expect = 1e-88,   Method: Compositional matrix adjust.
 Identities = 152/200 (76%), Positives = 175/200 (87%)

Query: 13  ILAFIFSPQAVYGIRFVIDREECFSHNVQYEGDTVHASFVVIKADSSWYSSHDGVDLVVK 72
           +L  ++S QA  GIRFVIDREECFSH  +YEGDT+H SFVVIK+DS W+ + DGVDLV+ 
Sbjct: 9   LLGLLWSFQATLGIRFVIDREECFSHKAEYEGDTLHVSFVVIKSDSQWHFNEDGVDLVIH 68

Query: 73  GPASDQIHDFRDKISEKFEFVAHHKGVHRFCFTNKSPYHETIDFDVHVGHFSYYDEHAKD 132
           GP  +QIHDFR++IS K +FV   KGV+RFCFTNKSPYHETIDFDV +GHF+YYD+HAKD
Sbjct: 69  GPTGEQIHDFREQISAKHDFVVQKKGVYRFCFTNKSPYHETIDFDVQLGHFAYYDQHAKD 128

Query: 133 EHFNPLLEQISKLEEALYNIQFEQHWLEAQTERQAIVNEAMSRRAVYKAFWESTALVGAS 192
           EHF PL+EQISKLEEALYNIQFEQHWLEAQT+RQAIVNE MS+RAV+KA +ES AL+GAS
Sbjct: 129 EHFTPLMEQISKLEEALYNIQFEQHWLEAQTDRQAIVNENMSKRAVHKALFESFALIGAS 188

Query: 193 VLQVYLLRRLFERKLGMSRV 212
            LQVYLLRRLFERKLGMSRV
Sbjct: 189 FLQVYLLRRLFERKLGMSRV 208

Involved in vesicular protein trafficking. Mainly functions in the early secretory pathway but also in post-Golgi membranes. Thought to act as cargo receptor at the lumenal side for incorporation of secretory cargo molecules into transport vesicles and to be involved in vesicle coat formation at the cytoplasmic side (By similarity). Interacts with p24delta5 at endoplasmic reticulum export sites for endoplasmic reticulum exit and coupled transport to the Golgi apparatus.
Arabidopsis thaliana (taxid: 3702)

>sp|Q9LIL4|P24B3_ARATH Transmembrane emp24 domain-containing protein p24beta3 OS=Arabidopsis thaliana GN=At3g22845 PE=2 SV=1

 Score =  139 bits (351), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 72/199 (36%), Positives = 109/199 (54%)

Query: 14  LAFIFSPQAVYGIRFVIDREECFSHNVQYEGDTVHASFVVIKADSSWYSSHDGVDLVVKG 73
           L  + S   +  +   ++ EEC    V YEGDTV  +FVV+  D  W S H G+D  V  
Sbjct: 16  LILLNSINQISSLSVTVNDEECVQEYVLYEGDTVSGNFVVVDHDIFWGSDHPGLDFTVTS 75

Query: 74  PASDQIHDFRDKISEKFEFVAHHKGVHRFCFTNKSPYHETIDFDVHVGHFSYYDEHAKDE 133
           PA + +   +    +KFEF A   G+++FCF N     ET+ F +HVGH     + AKDE
Sbjct: 76  PAGNIVQTLKGTSGDKFEFKAPKSGMYKFCFHNPYSTPETVSFYIHVGHIPNEHDLAKDE 135

Query: 134 HFNPLLEQISKLEEALYNIQFEQHWLEAQTERQAIVNEAMSRRAVYKAFWESTALVGASV 193
           H +P+  +I++L EAL ++  EQ +L+A+  R    NE+  +R ++    E   L  AS 
Sbjct: 136 HLDPVNVKIAELREALESVVAEQKYLKARDTRHRHTNESTRKRVIFYTVGEYIFLAAASG 195

Query: 194 LQVYLLRRLFERKLGMSRV 212
           LQV  +R+LF + +  +RV
Sbjct: 196 LQVLYIRKLFSKSVAYNRV 214

Involved in vesicular protein trafficking. Mainly functions in the early secretory pathway but also in post-Golgi membranes. Thought to act as cargo receptor at the lumenal side for incorporation of secretory cargo molecules into transport vesicles and to be involved in vesicle coat formation at the cytoplasmic side.

Arabidopsis thaliana (taxid: 3702)

>sp|A7SXK3|TMED_NEMVE Transmembrane emp24 domain-containing protein OS=Nematostella vectensis GN=v1g194562 PE=3 SV=1

 Score = 79.3 bits (194), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 55/198 (27%), Positives = 94/198 (47%), Gaps = 11/198 (5%)

Query: 9   CIAAILAFIFSPQAVYGIRFVIDREECFSHNVQYEGDTVHASFVVIKADSSWYSSHDGVD 68
           CI  +L F+      Y I      EECF H+    G  +   F V  A+  +      +D
Sbjct: 10  CI--VLMFLARSSLCYFITIDAHGEECF-HDKVTSGTKMGLIFEV--AEGGFLD----ID 60

Query: 69  LVVKGPASDQIHDFRDKISEKFEFVAHHKGVHRFCFTNK--SPYHETIDFDVHVGHFSYY 126
           + + GP    I+    + S K+ F AH  G + +CF+NK  +   + + F + +G     
Sbjct: 61  VKIIGPDQKVIYSGERETSGKYTFAAHMDGTYNYCFSNKMSTMTPKVLKFSMDIGEAPKD 120

Query: 127 DEHAKDEHFNPLLEQISKLEEALYNIQFEQHWLEAQTERQAIVNEAMSRRAVYKAFWEST 186
                +   + L E +S+L EA+  ++ EQ ++E +      +N+  + R V+ +F+ES 
Sbjct: 121 TSKEDNAGHDKLSEMVSQLSEAMTGVKHEQEYMEVRERIHRSINDNTNSRVVWWSFFESL 180

Query: 187 ALVGASVLQVYLLRRLFE 204
            LV  ++ QVY L+R FE
Sbjct: 181 VLVAMTLGQVYYLKRFFE 198

Could have a role in the budding of coatomer-coated and other species of coated vesicles.

Nematostella vectensis (taxid: 45351)

>sp|Q63524|TMED2_RAT Transmembrane emp24 domain-containing protein 2 OS=Rattus norvegicus GN=Tmed2 PE=1 SV=1

 Score = 75.5 bits (184), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 39/140 (27%), Positives = 75/140 (53%), Gaps = 2/140 (1%)

Query: 67  VDLVVKGPASDQIHDFRDKISEKFEFVAHHKGVHRFCFTNK--SPYHETIDFDVHVGHFS 124
           +D+ + GP +  I+    + S K+ F AH  G ++FCF+N+  +   + + F + +G   
Sbjct: 57  IDVEITGPDNKGIYKGDRESSGKYTFAAHMDGTYKFCFSNRMSTMTPKIVMFTIDIGEAP 116

Query: 125 YYDEHAKDEHFNPLLEQISKLEEALYNIQFEQHWLEAQTERQAIVNEAMSRRAVYKAFWE 184
              +   + H N L E I++L  A+  ++ EQ ++E +      +N+  + R V  +F+E
Sbjct: 117 KGQDMETEAHQNKLEEMINELAVAMTAVKHEQEYMEVRERIHRAINDNTNSRVVLWSFFE 176

Query: 185 STALVGASVLQVYLLRRLFE 204
           +  LV  ++ Q+Y L+R FE
Sbjct: 177 ALVLVAMTLGQIYYLKRFFE 196

Involved in vesicular protein trafficking. Mainly functions in the early secretory pathway but also in post-Golgi membranes. Thought to act as cargo receptor at the lumenal side for incorporation of secretory cargo molecules into transport vesicles and to be involved in vesicle coat formation at the cytoplasmic side. In COPII vesicle-mediated anterograde transport involved in the transport of GPI-anchored proteins and proposed to act togther with TMED10 as their cargo receptor; the function specifically implies SEC24C and SEC24D of the COPII vesicle coat and lipid raft-like microdomains of the ER. Recognizes GPI anchors structural remodeled in the ER by PGAP1 and MPPE1. In COPI vesicle-mediated retrograde transport inhibits the GTPase-activating activity of ARFGAP1 towards ARF1 thus preventing immature uncoating and allowing cargo selection to take place. Involved in trafficking of G protein-coupled receptors (GPCRs). Regulates F2RL1, OPRM1 and P2RY4 exocytic trafficking from the Golgi to the plasma membrane thus contributing to receptor resensitization. Facilitates CASR maturation and stabilization in the early secretory pathway and increases CASR plasma membrane targeting. Proposed to be involved in organization of intracellular membranes such as the maintenance of the Golgi apparatus. May also play a role in the biosynthesis of secreted cargo such as eventual processing.

Rattus norvegicus (taxid: 10116)

>sp|Q15363|TMED2_HUMAN Transmembrane emp24 domain-containing protein 2 OS=Homo sapiens GN=TMED2 PE=1 SV=1

 Score = 75.5 bits (184), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 39/140 (27%), Positives = 75/140 (53%), Gaps = 2/140 (1%)

Query: 67  VDLVVKGPASDQIHDFRDKISEKFEFVAHHKGVHRFCFTNK--SPYHETIDFDVHVGHFS 124
           +D+ + GP +  I+    + S K+ F AH  G ++FCF+N+  +   + + F + +G   
Sbjct: 57  IDVEITGPDNKGIYKGDRESSGKYTFAAHMDGTYKFCFSNRMSTMTPKIVMFTIDIGEAP 116

Query: 125 YYDEHAKDEHFNPLLEQISKLEEALYNIQFEQHWLEAQTERQAIVNEAMSRRAVYKAFWE 184
              +   + H N L E I++L  A+  ++ EQ ++E +      +N+  + R V  +F+E
Sbjct: 117 KGQDMETEAHQNKLEEMINELAVAMTAVKHEQEYMEVRERIHRAINDNTNSRVVLWSFFE 176

Query: 185 STALVGASVLQVYLLRRLFE 204
           +  LV  ++ Q+Y L+R FE
Sbjct: 177 ALVLVAMTLGQIYYLKRFFE 196

Involved in vesicular protein trafficking. Mainly functions in the early secretory pathway but also in post-Golgi membranes. Thought to act as cargo receptor at the lumenal side for incorporation of secretory cargo molecules into transport vesicles and to be involved in vesicle coat formation at the cytoplasmic side. In COPII vesicle-mediated anterograde transport involved in the transport of GPI-anchored proteins and proposed to act togther with TMED10 as their cargo receptor; the function specifically implies SEC24C and SEC24D of the COPII vesicle coat and lipid raft-like microdomains of the ER. Recognizes GPI anchors structural remodeled in the ER by PGAP1 and MPPE1. In COPI vesicle-mediated retrograde transport inhibits the GTPase-activating activity of ARFGAP1 towards ARF1 thus preventing immature uncoating and allowing cargo selection to take place. Involved in trafficking of G protein-coupled receptors (GPCRs). Regulates F2RL1, OPRM1 and P2RY4 exocytic trafficking from the Golgi to the plasma membrane thus contributing to receptor resensitization. Facilitates CASR maturation and stabilization in the early secretory pathway and increases CASR plasma membrane targeting. Proposed to be involved in organization of intracellular membranes such as the maintenance of the Golgi apparatus. May also play a role in the biosynthesis of secreted cargo such as eventual processing.

Homo sapiens (taxid: 9606)

>sp|Q9R0Q3|TMED2_MOUSE Transmembrane emp24 domain-containing protein 2 OS=Mus musculus GN=Tmed2 PE=1 SV=1

 Score = 75.5 bits (184), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 39/140 (27%), Positives = 75/140 (53%), Gaps = 2/140 (1%)

Query: 67  VDLVVKGPASDQIHDFRDKISEKFEFVAHHKGVHRFCFTNK--SPYHETIDFDVHVGHFS 124
           +D+ + GP +  I+    + S K+ F AH  G ++FCF+N+  +   + + F + +G   
Sbjct: 57  IDVEITGPDNKGIYKGDRESSGKYTFAAHMDGTYKFCFSNRMSTMTPKIVMFTIDIGEAP 116

Query: 125 YYDEHAKDEHFNPLLEQISKLEEALYNIQFEQHWLEAQTERQAIVNEAMSRRAVYKAFWE 184
              +   + H N L E I++L  A+  ++ EQ ++E +      +N+  + R V  +F+E
Sbjct: 117 KGQDMETEAHQNKLEEMINELAVAMTAVKHEQEYMEVRERIHRAINDNTNSRVVLWSFFE 176

Query: 185 STALVGASVLQVYLLRRLFE 204
           +  LV  ++ Q+Y L+R FE
Sbjct: 177 ALVLVAMTLGQIYYLKRFFE 196

Involved in vesicular protein trafficking. Mainly functions in the early secretory pathway but also in post-Golgi membranes. Thought to act as cargo receptor at the lumenal side for incorporation of secretory cargo molecules into transport vesicles and to be involved in vesicle coat formation at the cytoplasmic side. In COPII vesicle-mediated anterograde transport involved in the transport of GPI-anchored proteins and proposed to act togther with TMED10 as their cargo receptor; the function specifically implies SEC24C and SEC24D of the COPII vesicle coat and lipid raft-like microdomains of the ER. Recognizes GPI anchors structural remodeled in the ER by PGAP1 and MPPE1. In COPI vesicle-mediated retrograde transport inhibits the GTPase-activating activity of ARFGAP1 towards ARF1 thus preventing immature uncoating and allowing cargo selection to take place. Involved in trafficking of G protein-coupled receptors (GPCRs). Regulates F2RL1, OPRM1 and P2RY4 exocytic trafficking from the Golgi to the plasma membrane thus contributing to receptor resensitization. Facilitates CASR maturation and stabilization in the early secretory pathway and increases CASR plasma membrane targeting. Proposed to be involved in organization of intracellular membranes such as the maintenance of the Golgi apparatus. May also play a role in the biosynthesis of secreted cargo such as eventual processing (By similarity). Required for morphogenesis of embryo and placenta.

Mus musculus (taxid: 10090)

>sp|P49020|TMED2_CRIGR Transmembrane emp24 domain-containing protein 2 (Fragment) OS=Cricetulus griseus GN=TMED2 PE=1 SV=1

 Score = 75.5 bits (184), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 39/140 (27%), Positives = 75/140 (53%), Gaps = 2/140 (1%)

Query: 67  VDLVVKGPASDQIHDFRDKISEKFEFVAHHKGVHRFCFTNK--SPYHETIDFDVHVGHFS 124
           +D+ + GP +  I+    + S K+ F AH  G ++FCF+N+  +   + + F + +G   
Sbjct: 52  IDVEITGPDNKGIYKGDRESSGKYTFAAHMDGTYKFCFSNRMSTMTPKIVMFTIDIGEAP 111

Query: 125 YYDEHAKDEHFNPLLEQISKLEEALYNIQFEQHWLEAQTERQAIVNEAMSRRAVYKAFWE 184
              +   + H N L E I++L  A+  ++ EQ ++E +      +N+  + R V  +F+E
Sbjct: 112 KGQDMETEAHQNKLEEMINELAVAMTAVKHEQEYMEVRERIHRAINDNTNSRVVLWSFFE 171

Query: 185 STALVGASVLQVYLLRRLFE 204
           +  LV  ++ Q+Y L+R FE
Sbjct: 172 ALVLVAMTLGQIYYLKRFFE 191

Involved in vesicular protein trafficking. Mainly functions in the early secretory pathway but also in post-Golgi membranes. Thought to act as cargo receptor at the lumenal side for incorporation of secretory cargo molecules into transport vesicles and to be involved in vesicle coat formation at the cytoplasmic side. In COPII vesicle-mediated anterograde transport involved in the transport of GPI-anchored proteins and proposed to act togther with TMED10 as their cargo receptor; the function specifically implies SEC24C and SEC24D of the COPII vesicle coat and lipid raft-like microdomains of the ER. Recognizes GPI anchors structural remodeled in the ER by PGAP1 and MPPE1. In COPI vesicle-mediated retrograde transport inhibits the GTPase-activating activity of ARFGAP1 towards ARF1 thus preventing immature uncoating and allowing cargo selection to take place. Involved in trafficking of G protein-coupled receptors (GPCRs). Regulates F2RL1, OPRM1 and P2RY4 exocytic trafficking from the Golgi to the plasma membrane thus contributing to receptor resensitization. Facilitates CASR maturation and stabilization in the early secretory pathway and increases CASR plasma membrane targeting. Proposed to be involved in organization of intracellular membranes such as the maintenance of the Golgi apparatus. May also play a role in the biosynthesis of secreted cargo such as eventual processing.

Cricetulus griseus (taxid: 10029)

>sp|O17528|TMED2_CAEEL Suppressor/enhancer of lin-12 protein 9 OS=Caenorhabditis elegans GN=sel-9 PE=1 SV=1

 Score = 70.1 bits (170), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 56/199 (28%), Positives = 94/199 (47%), Gaps = 14/199 (7%)

Query: 13  ILAFIF-SPQAVYGIRFVIDREECFSHNVQYEGDTVHASFVVIKADSSWYSSHDGVDLVV 71
           ILA +F +P A Y I    + E+CF   +   G  +   F V  A+  +      +D+ +
Sbjct: 7   ILAVLFVTPAASYFIHVDANEEQCFFDRLT-SGTKMGLMFEV--AEGGFLD----IDVKI 59

Query: 72  KGPASDQIHDFRDKISEKFEFVAHHKGVHRFCFTNK--SPYHETIDFDVHVG----HFSY 125
            GP + +I+    + S KF F AH  GV+ +CF NK  +   + + F V +         
Sbjct: 60  TGPDNKEIYKGERESSGKFTFAAHMDGVYTYCFGNKMSTMTPKAVMFTVEITEPHQQAPG 119

Query: 126 YDEHAKDEHFNPLLEQISKLEEALYNIQFEQHWLEAQTERQAIVNEAMSRRAVYKAFWES 185
              +        L E + +L  AL +++ EQ ++E +      +NE  + R V  A +E+
Sbjct: 120 AAANQDAADNAKLEEMVRELSSALMSVKHEQEYMEVRERVHRNINENTNSRVVMWAAFEA 179

Query: 186 TALVGASVLQVYLLRRLFE 204
             LVG +V Q++ L+R FE
Sbjct: 180 FVLVGMTVGQIFYLKRFFE 198

May have a role in the negative regulation of lin-12 and glp-1 transport to the cell surface. May also have a role in a quality control mechanism for endoplasmic reticulum-Golgi transport; the budding of coatomer-coated and other species of coated vesicles, could bind cargo molecules to collect them into budding vesicles.

Caenorhabditis elegans (taxid: 6239)

>sp|Q769F9|TMEDA_DICDI Transmembrane emp24 domain-containing protein A OS=Dictyostelium discoideum GN=empA PE=3 SV=1

 Score = 62.0 bits (149), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 34/111 (30%), Positives = 59/111 (53%), Gaps = 2/111 (1%)

Query: 98  GVHRFCFTNK--SPYHETIDFDVHVGHFSYYDEHAKDEHFNPLLEQISKLEEALYNIQFE 155
           GV+ FCF+NK  S   +T+ F + VG  S   E AK +   P+   I  L + +  ++ E
Sbjct: 92  GVYSFCFSNKMSSLTDKTVSFILSVGESSPIREIAKKKDLTPIERSIMTLSDGVIAVKNE 151

Query: 156 QHWLEAQTERQAIVNEAMSRRAVYKAFWESTALVGASVLQVYLLRRLFERK 206
           Q++ + +        E+ + R ++ + +E+  L+  S+ Q+Y LRR FE K
Sbjct: 152 QNYFKMREAAHRNTAESTNSRVLWWSVFEAFVLIALSIWQIYYLRRFFEVK 202

Could have a role in the budding of coatomer-coated and other species of coated vesicles.

Dictyostelium discoideum (taxid: 44689)

>sp|Q9P7I9|EMP24_SCHPO Endosomal protein P24B OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=emp24 PE=3 SV=1

 Score = 56.6 bits (135), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 43/196 (21%), Positives = 85/196 (43%), Gaps = 8/196 (4%)

Query: 11  AAILAFIFSPQAVYGIRFVIDREECFSHNVQYEGDTVHASFVVIKADSSWYSSHDGVDLV 70
           A + A+  S    +GI     + ECF  N++   D +  ++       +       V + 
Sbjct: 9   AVLCAYFISVVFGHGITLKPHQRECFYENLR-NNDQMSVTY------QTNVGGDQLVSMS 61

Query: 71  VKGPASDQIHDFRDKISEKFEFVAHHKGVHRFCFTNKSPYHETIDFDVHVGHFSYYDEHA 130
           +  PA   +H        ++ F   + G + +CF N +   E+ +   +V    Y  +  
Sbjct: 62  IYNPAGQIMHQEVPNSMAQYSFTVKNPGKYMYCFYNDALDGESKEVLFNVHGVIYISDED 121

Query: 131 KDEHFNPLLEQISKLEEALYNIQFEQHWLEAQTERQAIVNEAMSRRAVYKAFWESTALVG 190
            D + NPLL ++ +L + +  ++ EQ +  A+        E+ + R  + +  ++  LV 
Sbjct: 122 LDAN-NPLLGKVRQLHDTISKVKHEQEYFVARERIHRNTAESTNDRVKWWSILQTVILVS 180

Query: 191 ASVLQVYLLRRLFERK 206
             V Q++ L+RLFE K
Sbjct: 181 VCVFQIFYLKRLFEVK 196

Constituent of COPII-coated endoplasmic reticulum-derived transport vesicles. Required for efficient transport of a subset of secretory proteins to the Golgi.

Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	212
359494189	922	PREDICTED: cellulose synthase-like prote	0.957	0.220	0.805	6e-95
255563552	938	coated vesicle membrane protein, putativ	0.943	0.213	0.82	6e-95
296089935	211	unnamed protein product [Vitis vinifera]	0.995	1.0	0.792	7e-95
225447504	214	PREDICTED: uncharacterized protein LOC10	0.971	0.962	0.787	1e-93
224061232	213	predicted protein [Populus trichocarpa]	1.0	0.995	0.816	1e-92
388519235	212	unknown [Lotus japonicus]	1.0	1.0	0.754	1e-90
449453614	214	PREDICTED: transmembrane emp24 domain-co	0.957	0.948	0.768	2e-89
357495489	214	Transmembrane emp24 domain-containing pr	0.957	0.948	0.768	2e-89
357495491	213	Transmembrane emp24 domain-containing pr	0.957	0.953	0.768	3e-89
356554509	212	PREDICTED: transmembrane emp24 domain-co	0.948	0.948	0.771	2e-88

>gi|359494189|ref|XP_002266196.2| PREDICTED: cellulose synthase-like protein E1 [Vitis vinifera]

 Score =  352 bits (903), Expect = 6e-95,   Method: Compositional matrix adjust.
 Identities = 166/206 (80%), Positives = 186/206 (90%), Gaps = 3/206 (1%)

Query: 7   GFCIAAILAFIFSPQAVYGIRFVIDREECFSHNVQYEGDTVHASFVVIKADSSWYSSHDG 66
           GF +  +L    S QAV GIRFVIDREECFSHNV+YEGDT+HASFVVIK D+SW+ + DG
Sbjct: 720 GFIVILVL---LSVQAVCGIRFVIDREECFSHNVEYEGDTIHASFVVIKVDASWHYNKDG 776

Query: 67  VDLVVKGPASDQIHDFRDKISEKFEFVAHHKGVHRFCFTNKSPYHETIDFDVHVGHFSYY 126
           VDLVVKGP+ +QI D+RDK SEKFEF+AH KG+HRFCFTNKSPYHETIDFDV+ GHF+YY
Sbjct: 777 VDLVVKGPSGNQIQDYRDKTSEKFEFMAHEKGLHRFCFTNKSPYHETIDFDVYTGHFAYY 836

Query: 127 DEHAKDEHFNPLLEQISKLEEALYNIQFEQHWLEAQTERQAIVNEAMSRRAVYKAFWEST 186
           D+HAKDEHFNPLLEQISKLEEALYNIQFEQHWLEAQTERQA VN+AM+RRAVYKAF+ES 
Sbjct: 837 DQHAKDEHFNPLLEQISKLEEALYNIQFEQHWLEAQTERQARVNDAMNRRAVYKAFYESA 896

Query: 187 ALVGASVLQVYLLRRLFERKLGMSRV 212
           AL+GAS+LQVYLLRRLFERKLG SRV
Sbjct: 897 ALIGASILQVYLLRRLFERKLGTSRV 922

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255563552|ref|XP_002522778.1| coated vesicle membrane protein, putative [Ricinus communis] gi|223538016|gb|EEF39629.1| coated vesicle membrane protein, putative [Ricinus communis]

 Score =  352 bits (903), Expect = 6e-95,   Method: Compositional matrix adjust.
 Identities = 164/200 (82%), Positives = 183/200 (91%)

Query: 13  ILAFIFSPQAVYGIRFVIDREECFSHNVQYEGDTVHASFVVIKADSSWYSSHDGVDLVVK 72
           +LA + S +   GIRFVIDREECFSH+V+YEGDTVH SFVV+K DSSW+ + DGVDLV+K
Sbjct: 739 LLALLLSAREALGIRFVIDREECFSHDVKYEGDTVHVSFVVVKTDSSWHYTEDGVDLVIK 798

Query: 73  GPASDQIHDFRDKISEKFEFVAHHKGVHRFCFTNKSPYHETIDFDVHVGHFSYYDEHAKD 132
           GP+ DQIHDFRDK+S+K+EF+A  KGVH FCFTNKSPYHETIDFDVHVGHFSYYDEHAKD
Sbjct: 799 GPSGDQIHDFRDKVSDKYEFMARQKGVHHFCFTNKSPYHETIDFDVHVGHFSYYDEHAKD 858

Query: 133 EHFNPLLEQISKLEEALYNIQFEQHWLEAQTERQAIVNEAMSRRAVYKAFWESTALVGAS 192
           EHF PLL+QI KLEEALYNIQFEQHWLEAQTERQAIVNEAMSRRAV+KAF+ES AL+GAS
Sbjct: 859 EHFKPLLDQIWKLEEALYNIQFEQHWLEAQTERQAIVNEAMSRRAVHKAFYESAALIGAS 918

Query: 193 VLQVYLLRRLFERKLGMSRV 212
           VLQVYLLRRLFERKLG+SRV
Sbjct: 919 VLQVYLLRRLFERKLGISRV 938

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|296089935|emb|CBI39754.3| unnamed protein product [Vitis vinifera]

 Score =  352 bits (902), Expect = 7e-95,   Method: Compositional matrix adjust.
 Identities = 168/212 (79%), Positives = 188/212 (88%), Gaps = 1/212 (0%)

Query: 1   MKVGPVGFCIAAILAFIFSPQAVYGIRFVIDREECFSHNVQYEGDTVHASFVVIKADSSW 60
           MK+    F    IL  + S QAV GIRFVIDREECFSHNV+YEGDT+HASFVVIK D+SW
Sbjct: 1   MKIWAPEFGFIVILVLL-SVQAVCGIRFVIDREECFSHNVEYEGDTIHASFVVIKVDASW 59

Query: 61  YSSHDGVDLVVKGPASDQIHDFRDKISEKFEFVAHHKGVHRFCFTNKSPYHETIDFDVHV 120
           + + DGVDLVVKGP+ +QI D+RDK SEKFEF+AH KG+HRFCFTNKSPYHETIDFDV+ 
Sbjct: 60  HYNKDGVDLVVKGPSGNQIQDYRDKTSEKFEFMAHEKGLHRFCFTNKSPYHETIDFDVYT 119

Query: 121 GHFSYYDEHAKDEHFNPLLEQISKLEEALYNIQFEQHWLEAQTERQAIVNEAMSRRAVYK 180
           GHF+YYD+HAKDEHFNPLLEQISKLEEALYNIQFEQHWLEAQTERQA VN+AM+RRAVYK
Sbjct: 120 GHFAYYDQHAKDEHFNPLLEQISKLEEALYNIQFEQHWLEAQTERQARVNDAMNRRAVYK 179

Query: 181 AFWESTALVGASVLQVYLLRRLFERKLGMSRV 212
           AF+ES AL+GAS+LQVYLLRRLFERKLG SRV
Sbjct: 180 AFYESAALIGASILQVYLLRRLFERKLGTSRV 211

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225447504|ref|XP_002265343.1| PREDICTED: uncharacterized protein LOC100245903 isoform 2 [Vitis vinifera] gi|225447506|ref|XP_002265305.1| PREDICTED: uncharacterized protein LOC100245903 isoform 1 [Vitis vinifera] gi|296085048|emb|CBI28463.3| unnamed protein product [Vitis vinifera]

 Score =  347 bits (891), Expect = 1e-93,   Method: Compositional matrix adjust.
 Identities = 163/207 (78%), Positives = 185/207 (89%), Gaps = 1/207 (0%)

Query: 6   VGFCIAAILAFIFSPQAVYGIRFVIDREECFSHNVQYEGDTVHASFVVIKADSSWYSSHD 65
           +G  I  +L  +   Q V GIRFV+DRE+CFSH+VQYEGDTVH SFVVIKAD+SW+ + D
Sbjct: 9   IGIGIVVML-LLSDLQGVVGIRFVVDREDCFSHDVQYEGDTVHVSFVVIKADASWHYAED 67

Query: 66  GVDLVVKGPASDQIHDFRDKISEKFEFVAHHKGVHRFCFTNKSPYHETIDFDVHVGHFSY 125
           GVDLV+KGP+ DQIHDFRDK SEKFEFVA  KG+HRFCFTNKSPY ETIDFDVHVGHF+Y
Sbjct: 68  GVDLVIKGPSGDQIHDFRDKTSEKFEFVAQKKGLHRFCFTNKSPYQETIDFDVHVGHFTY 127

Query: 126 YDEHAKDEHFNPLLEQISKLEEALYNIQFEQHWLEAQTERQAIVNEAMSRRAVYKAFWES 185
           YD+HAKDEHFNPLLEQI+KLEEALYNIQFEQHWLEAQT+RQAIVNE MS+RAV+KA +ES
Sbjct: 128 YDQHAKDEHFNPLLEQIAKLEEALYNIQFEQHWLEAQTDRQAIVNEGMSQRAVHKAMFES 187

Query: 186 TALVGASVLQVYLLRRLFERKLGMSRV 212
            ALVGASVLQ+YLL+RLFERKLG+SRV
Sbjct: 188 VALVGASVLQIYLLQRLFERKLGISRV 214

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224061232|ref|XP_002300382.1| predicted protein [Populus trichocarpa] gi|118482006|gb|ABK92934.1| unknown [Populus trichocarpa] gi|222847640|gb|EEE85187.1| predicted protein [Populus trichocarpa]

 Score =  344 bits (882), Expect = 1e-92,   Method: Compositional matrix adjust.
 Identities = 173/212 (81%), Positives = 192/212 (90%)

Query: 1   MKVGPVGFCIAAILAFIFSPQAVYGIRFVIDREECFSHNVQYEGDTVHASFVVIKADSSW 60
           M +   G+ +  +LA + SP+AV+GIRFVIDREECFSH+V+YEGDTVH SFVV+K DSSW
Sbjct: 2   MGIALKGYFVVLLLALLSSPEAVFGIRFVIDREECFSHDVKYEGDTVHVSFVVVKVDSSW 61

Query: 61  YSSHDGVDLVVKGPASDQIHDFRDKISEKFEFVAHHKGVHRFCFTNKSPYHETIDFDVHV 120
           + S DGVDLVVKGP+ DQIHDFRDKISEK EFVAH KGVHRFCFTNKSPYHETIDFDVHV
Sbjct: 62  HYSDDGVDLVVKGPSGDQIHDFRDKISEKIEFVAHQKGVHRFCFTNKSPYHETIDFDVHV 121

Query: 121 GHFSYYDEHAKDEHFNPLLEQISKLEEALYNIQFEQHWLEAQTERQAIVNEAMSRRAVYK 180
           GHFSYYDEHAKDEHF PLLEQISKLEEALYNIQFEQHWLEAQT+RQAI+N+AMSRR ++K
Sbjct: 122 GHFSYYDEHAKDEHFQPLLEQISKLEEALYNIQFEQHWLEAQTDRQAIINDAMSRRTIHK 181

Query: 181 AFWESTALVGASVLQVYLLRRLFERKLGMSRV 212
           AF+ES ALV AS+LQVYLLRRLFERKLGMSRV
Sbjct: 182 AFFESAALVAASILQVYLLRRLFERKLGMSRV 213

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388519235|gb|AFK47679.1| unknown [Lotus japonicus]

 Score =  338 bits (866), Expect = 1e-90,   Method: Compositional matrix adjust.
 Identities = 160/212 (75%), Positives = 185/212 (87%)

Query: 1   MKVGPVGFCIAAILAFIFSPQAVYGIRFVIDREECFSHNVQYEGDTVHASFVVIKADSSW 60
           M +  +   + A++   ++ +A  GIRFVIDR+ECFSH+V+YEGDTVH SFVVIKADS W
Sbjct: 1   MGLSLIHVLLFALIGVFWNLKASEGIRFVIDRDECFSHDVKYEGDTVHISFVVIKADSPW 60

Query: 61  YSSHDGVDLVVKGPASDQIHDFRDKISEKFEFVAHHKGVHRFCFTNKSPYHETIDFDVHV 120
           +   +GVDLVVKGPA +QIHDFRDK SEKFEFVAH  GVH+FCFTNKSPYHETIDFDVHV
Sbjct: 61  HYGDEGVDLVVKGPAGEQIHDFRDKTSEKFEFVAHKSGVHKFCFTNKSPYHETIDFDVHV 120

Query: 121 GHFSYYDEHAKDEHFNPLLEQISKLEEALYNIQFEQHWLEAQTERQAIVNEAMSRRAVYK 180
           GHFSYY++HAKDEHF PLLEQI+KLEEALYNIQFEQHWLEAQT+RQAIVN+AMSRRA++K
Sbjct: 121 GHFSYYEQHAKDEHFTPLLEQIAKLEEALYNIQFEQHWLEAQTDRQAIVNDAMSRRAIHK 180

Query: 181 AFWESTALVGASVLQVYLLRRLFERKLGMSRV 212
           A +ES AL+GAS LQVYLL+RLFERKLG SRV
Sbjct: 181 ALFESAALIGASALQVYLLQRLFERKLGTSRV 212

Source: Lotus japonicus

Species: Lotus japonicus

Genus: Lotus

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449453614|ref|XP_004144551.1| PREDICTED: transmembrane emp24 domain-containing protein p24beta2-like [Cucumis sativus]

 Score =  333 bits (855), Expect = 2e-89,   Method: Compositional matrix adjust.
 Identities = 156/203 (76%), Positives = 180/203 (88%)

Query: 10  IAAILAFIFSPQAVYGIRFVIDREECFSHNVQYEGDTVHASFVVIKADSSWYSSHDGVDL 69
           +A +   + S +   GIRFVIDREECFSH+VQYEGDTVH SFVVIKADS W+   DGVDL
Sbjct: 12  MAFVGVLLLSLRKSEGIRFVIDREECFSHHVQYEGDTVHVSFVVIKADSPWHYGDDGVDL 71

Query: 70  VVKGPASDQIHDFRDKISEKFEFVAHHKGVHRFCFTNKSPYHETIDFDVHVGHFSYYDEH 129
           V+KGP+ + +HDFRDK SEK EF+AH+KG+HRFCFTNKSPYHETIDFDVHVGHFSY+++H
Sbjct: 72  VIKGPSGEHLHDFRDKTSEKHEFIAHNKGLHRFCFTNKSPYHETIDFDVHVGHFSYHEQH 131

Query: 130 AKDEHFNPLLEQISKLEEALYNIQFEQHWLEAQTERQAIVNEAMSRRAVYKAFWESTALV 189
           AKDEHFNPL++QISKLEEALYNIQFEQHWLEAQT+RQAIVNE M +RA++KA +ES ALV
Sbjct: 132 AKDEHFNPLMDQISKLEEALYNIQFEQHWLEAQTDRQAIVNEGMGKRAIHKAMFESAALV 191

Query: 190 GASVLQVYLLRRLFERKLGMSRV 212
           GASVLQVYLL+RLFERKLG SRV
Sbjct: 192 GASVLQVYLLQRLFERKLGTSRV 214

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357495489|ref|XP_003618033.1| Transmembrane emp24 domain-containing protein [Medicago truncatula] gi|355519368|gb|AET00992.1| Transmembrane emp24 domain-containing protein [Medicago truncatula] gi|388521389|gb|AFK48756.1| unknown [Medicago truncatula]

 Score =  333 bits (854), Expect = 2e-89,   Method: Compositional matrix adjust.
 Identities = 156/203 (76%), Positives = 179/203 (88%)

Query: 10  IAAILAFIFSPQAVYGIRFVIDREECFSHNVQYEGDTVHASFVVIKADSSWYSSHDGVDL 69
           +  ++  + + +   GIRFVIDR+ECFSH+V+YEGDTVH SFVVIKADS W+   +GVDL
Sbjct: 12  VIVLIGMLLNWKETEGIRFVIDRDECFSHDVKYEGDTVHVSFVVIKADSPWHYGDEGVDL 71

Query: 70  VVKGPASDQIHDFRDKISEKFEFVAHHKGVHRFCFTNKSPYHETIDFDVHVGHFSYYDEH 129
           VVKGPA +QI DFRDK S+KFEFVAH  GVH+FCFTNKSPYHETIDFDVHVGHFSY+++H
Sbjct: 72  VVKGPAGEQIQDFRDKTSDKFEFVAHKPGVHKFCFTNKSPYHETIDFDVHVGHFSYFEQH 131

Query: 130 AKDEHFNPLLEQISKLEEALYNIQFEQHWLEAQTERQAIVNEAMSRRAVYKAFWESTALV 189
           AKDEHFNPLLEQI+KLEEALYNIQFEQHWLEAQT+RQAIVN+ MSRRAV+KA +ES AL+
Sbjct: 132 AKDEHFNPLLEQIAKLEEALYNIQFEQHWLEAQTDRQAIVNDGMSRRAVHKAIFESAALI 191

Query: 190 GASVLQVYLLRRLFERKLGMSRV 212
           GAS LQVYLLRRLFERKLG SRV
Sbjct: 192 GASALQVYLLRRLFERKLGTSRV 214

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357495491|ref|XP_003618034.1| Transmembrane emp24 domain-containing protein [Medicago truncatula] gi|355519369|gb|AET00993.1| Transmembrane emp24 domain-containing protein [Medicago truncatula]

 Score =  333 bits (854), Expect = 3e-89,   Method: Compositional matrix adjust.
 Identities = 156/203 (76%), Positives = 179/203 (88%)

Query: 10  IAAILAFIFSPQAVYGIRFVIDREECFSHNVQYEGDTVHASFVVIKADSSWYSSHDGVDL 69
           +  ++  + + +   GIRFVIDR+ECFSH+V+YEGDTVH SFVVIKADS W+   +GVDL
Sbjct: 11  VIVLIGMLLNWKETEGIRFVIDRDECFSHDVKYEGDTVHVSFVVIKADSPWHYGDEGVDL 70

Query: 70  VVKGPASDQIHDFRDKISEKFEFVAHHKGVHRFCFTNKSPYHETIDFDVHVGHFSYYDEH 129
           VVKGPA +QI DFRDK S+KFEFVAH  GVH+FCFTNKSPYHETIDFDVHVGHFSY+++H
Sbjct: 71  VVKGPAGEQIQDFRDKTSDKFEFVAHKPGVHKFCFTNKSPYHETIDFDVHVGHFSYFEQH 130

Query: 130 AKDEHFNPLLEQISKLEEALYNIQFEQHWLEAQTERQAIVNEAMSRRAVYKAFWESTALV 189
           AKDEHFNPLLEQI+KLEEALYNIQFEQHWLEAQT+RQAIVN+ MSRRAV+KA +ES AL+
Sbjct: 131 AKDEHFNPLLEQIAKLEEALYNIQFEQHWLEAQTDRQAIVNDGMSRRAVHKAIFESAALI 190

Query: 190 GASVLQVYLLRRLFERKLGMSRV 212
           GAS LQVYLLRRLFERKLG SRV
Sbjct: 191 GASALQVYLLRRLFERKLGTSRV 213

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356554509|ref|XP_003545588.1| PREDICTED: transmembrane emp24 domain-containing protein-like [Glycine max]

 Score =  330 bits (847), Expect = 2e-88,   Method: Compositional matrix adjust.
 Identities = 155/201 (77%), Positives = 179/201 (89%)

Query: 12  AILAFIFSPQAVYGIRFVIDREECFSHNVQYEGDTVHASFVVIKADSSWYSSHDGVDLVV 71
           A++  +++ Q   GIRFVIDR+ECFSH+V+YEGDTVH SFVVIKADS W+   +GVDLVV
Sbjct: 12  ALIGALWNLQRAEGIRFVIDRDECFSHDVKYEGDTVHVSFVVIKADSPWHYGDEGVDLVV 71

Query: 72  KGPASDQIHDFRDKISEKFEFVAHHKGVHRFCFTNKSPYHETIDFDVHVGHFSYYDEHAK 131
           KGP+ +QI DFRDK SEKF+FVAH  GVH+FCFTNKSPYHET+DFDVHVGHFSY+++HAK
Sbjct: 72  KGPSGEQIQDFRDKTSEKFDFVAHKSGVHKFCFTNKSPYHETVDFDVHVGHFSYFEQHAK 131

Query: 132 DEHFNPLLEQISKLEEALYNIQFEQHWLEAQTERQAIVNEAMSRRAVYKAFWESTALVGA 191
           DEHF PLLEQI KLEEALYNIQFEQHWLEAQT+RQAIVN+AMSRRAV+KA +ES AL+GA
Sbjct: 132 DEHFTPLLEQIGKLEEALYNIQFEQHWLEAQTDRQAIVNDAMSRRAVHKAIFESAALIGA 191

Query: 192 SVLQVYLLRRLFERKLGMSRV 212
           S LQVYLL+RLFERKLG SRV
Sbjct: 192 SALQVYLLQRLFERKLGTSRV 212

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	212
TAIR|locus:2091107	208	p24beta2 "p24 subfamily beta 2	0.943	0.961	0.76	2.2e-82
TAIR|locus:2094364	214	AT3G22845 [Arabidopsis thalian	0.938	0.929	0.361	9.8e-32
UNIPROTKB|Q5ZKB0	201	TMED2 "Uncharacterized protein	0.915	0.965	0.274	3.2e-17
UNIPROTKB|P49020	196	TMED2 "Transmembrane emp24 dom	0.886	0.959	0.258	2e-15
UNIPROTKB|C3V9V7	201	TMED2 "RNP24" [Bos taurus (tax	0.886	0.935	0.258	2.6e-15
UNIPROTKB|E2RGZ5	201	TMED2 "Uncharacterized protein	0.886	0.935	0.258	2.6e-15
UNIPROTKB|F2Z501	201	TMED2 "Uncharacterized protein	0.886	0.935	0.258	2.6e-15
RGD|69243	201	Tmed2 "transmembrane emp24 dom	0.886	0.935	0.258	2.6e-15
UNIPROTKB|Q15363	201	TMED2 "Transmembrane emp24 dom	0.886	0.935	0.258	3.3e-15
WB|WBGene00004766	203	sel-9 [Caenorhabditis elegans	0.872	0.911	0.301	6.9e-15

TAIR|locus:2091107 p24beta2 "p24 subfamily beta 2" [Arabidopsis thaliana (taxid:3702)]

 Score = 826 (295.8 bits), Expect = 2.2e-82, P = 2.2e-82
 Identities = 152/200 (76%), Positives = 175/200 (87%)

Query:    13 ILAFIFSPQAVYGIRFVIDREECFSHNVQYEGDTVHASFVVIKADSSWYSSHDGVDLVVK 72
             +L  ++S QA  GIRFVIDREECFSH  +YEGDT+H SFVVIK+DS W+ + DGVDLV+ 
Sbjct:     9 LLGLLWSFQATLGIRFVIDREECFSHKAEYEGDTLHVSFVVIKSDSQWHFNEDGVDLVIH 68

Query:    73 GPASDQIHDFRDKISEKFEFVAHHKGVHRFCFTNKSPYHETIDFDVHVGHFSYYDEHAKD 132
             GP  +QIHDFR++IS K +FV   KGV+RFCFTNKSPYHETIDFDV +GHF+YYD+HAKD
Sbjct:    69 GPTGEQIHDFREQISAKHDFVVQKKGVYRFCFTNKSPYHETIDFDVQLGHFAYYDQHAKD 128

Query:   133 EHFNPLLEQISKLEEALYNIQFEQHWLEAQTERQAIVNEAMSRRAVYKAFWESTALVGAS 192
             EHF PL+EQISKLEEALYNIQFEQHWLEAQT+RQAIVNE MS+RAV+KA +ES AL+GAS
Sbjct:   129 EHFTPLMEQISKLEEALYNIQFEQHWLEAQTDRQAIVNENMSKRAVHKALFESFALIGAS 188

Query:   193 VLQVYLLRRLFERKLGMSRV 212
              LQVYLLRRLFERKLGMSRV
Sbjct:   189 FLQVYLLRRLFERKLGMSRV 208

GO:0006810 "transport" evidence=IEA

GO:0006886 "intracellular protein transport" evidence=ISS

GO:0008320 "protein transmembrane transporter activity" evidence=ISS

GO:0016020 "membrane" evidence=ISS

GO:0005789 "endoplasmic reticulum membrane" evidence=IDA

GO:0005794 "Golgi apparatus" evidence=IDA

GO:0030134 "ER to Golgi transport vesicle" evidence=IDA

GO:0034976 "response to endoplasmic reticulum stress" evidence=RCA

GO:0005783 "endoplasmic reticulum" evidence=IDA

TAIR|locus:2094364 AT3G22845 [Arabidopsis thaliana (taxid:3702)]

 Score = 348 (127.6 bits), Expect = 9.8e-32, P = 9.8e-32
 Identities = 72/199 (36%), Positives = 109/199 (54%)

Query:    14 LAFIFSPQAVYGIRFVIDREECFSHNVQYEGDTVHASFVVIKADSSWYSSHDGVDLVVKG 73
             L  + S   +  +   ++ EEC    V YEGDTV  +FVV+  D  W S H G+D  V  
Sbjct:    16 LILLNSINQISSLSVTVNDEECVQEYVLYEGDTVSGNFVVVDHDIFWGSDHPGLDFTVTS 75

Query:    74 PASDQIHDFRDKISEKFEFVAHHKGVHRFCFTNKSPYHETIDFDVHVGHFSYYDEHAKDE 133
             PA + +   +    +KFEF A   G+++FCF N     ET+ F +HVGH     + AKDE
Sbjct:    76 PAGNIVQTLKGTSGDKFEFKAPKSGMYKFCFHNPYSTPETVSFYIHVGHIPNEHDLAKDE 135

Query:   134 HFNPLLEQISKLEEALYNIQFEQHWLEAQTERQAIVNEAMSRRAVYKAFWESTALVGASV 193
             H +P+  +I++L EAL ++  EQ +L+A+  R    NE+  +R ++    E   L  AS 
Sbjct:   136 HLDPVNVKIAELREALESVVAEQKYLKARDTRHRHTNESTRKRVIFYTVGEYIFLAAASG 195

Query:   194 LQVYLLRRLFERKLGMSRV 212
             LQV  +R+LF + +  +RV
Sbjct:   196 LQVLYIRKLFSKSVAYNRV 214

GO:0006810 "transport" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0005773 "vacuole" evidence=IDA

GO:0005794 "Golgi apparatus" evidence=IDA

GO:0016126 "sterol biosynthetic process" evidence=RCA

GO:0046520 "sphingoid biosynthetic process" evidence=RCA

GO:0005783 "endoplasmic reticulum" evidence=IDA

UNIPROTKB|Q5ZKB0 TMED2 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 211 (79.3 bits), Expect = 3.2e-17, P = 3.2e-17
 Identities = 56/204 (27%), Positives = 101/204 (49%)

Query:     3 VGPVGFCIAAILAFIFSPQAVYGIRFVIDREECFSHNVQYEGDTVHASFVVIKADSSWYS 62
             + PV   + A+LA + +P A Y +      EECF   V   G  +   F V  A+  +  
Sbjct:     1 MSPVR-AVLALLAALAAPAAAYFVSIDAHAEECFLERVP-SGTKMGLIFEV--AEGGFLD 56

Query:    63 SHDGVDLVVKGPASDQIHDFRDKISEKFEFVAHHKGVHRFCFTNK--SPYHETIDFDVHV 120
                 +D+ + GP +  I+    + S K+ F AH  G ++FCF+N+  +   + + F + +
Sbjct:    57 ----IDVEITGPDNKGIYKGDRESSGKYTFAAHMDGTYKFCFSNRMSTMTPKIVMFTIDI 112

Query:   121 GHFSYYDEHAKDEHFNPLLEQISKLEEALYNIQFEQHWLEAQTERQAIVNEAMSRRAVYK 180
             G      +   + H N L E I++L  A+  ++ EQ ++E +      +N+  + R V  
Sbjct:   113 GEAPKGQDMETEAHQNKLEEMINELAVAMTAVKHEQEYMEVRERIHRAINDNTNSRVVLW 172

Query:   181 AFWESTALVGASVLQVYLLRRLFE 204
             +F+E+  LV  ++ Q+Y L+R FE
Sbjct:   173 SFFEALVLVAMTLGQIYYLKRFFE 196

GO:0016021 "integral to membrane" evidence=IEA

GO:0001843 "neural tube closure" evidence=IEA

GO:0001892 "embryonic placenta development" evidence=IEA

GO:0001893 "maternal placenta development" evidence=IEA

GO:0001947 "heart looping" evidence=IEA

GO:0005783 "endoplasmic reticulum" evidence=IEA

GO:0005793 "endoplasmic reticulum-Golgi intermediate compartment" evidence=IEA

GO:0005794 "Golgi apparatus" evidence=IEA

GO:0007030 "Golgi organization" evidence=IEA

GO:0010628 "positive regulation of gene expression" evidence=IEA

GO:0032525 "somite rostral/caudal axis specification" evidence=IEA

GO:0034260 "negative regulation of GTPase activity" evidence=IEA

GO:0035264 "multicellular organism growth" evidence=IEA

GO:0036342 "post-anal tail morphogenesis" evidence=IEA

GO:0072661 "protein targeting to plasma membrane" evidence=IEA

UNIPROTKB|P49020 TMED2 "Transmembrane emp24 domain-containing protein 2" [Cricetulus griseus (taxid:10029)]

 Score = 194 (73.4 bits), Expect = 2.0e-15, P = 2.0e-15
 Identities = 51/197 (25%), Positives = 96/197 (48%)

Query:    10 IAAILAFIFSPQAVYGIRFVIDREECFSHNVQYEGDTVHASFVVIKADSSWYSSHDGVDL 69
             +  +LA + +  + Y +      EECF   V   G  +   F V  A+  +      +D+
Sbjct:     2 VLVLLAALLATASGYFVSIDAHAEECFFERVT-SGTKMGLIFEV--AEGGFLD----IDV 54

Query:    70 VVKGPASDQIHDFRDKISEKFEFVAHHKGVHRFCFTNK--SPYHETIDFDVHVGHFSYYD 127
              + GP +  I+    + S K+ F AH  G ++FCF+N+  +   + + F + +G      
Sbjct:    55 EITGPDNKGIYKGDRESSGKYTFAAHMDGTYKFCFSNRMSTMTPKIVMFTIDIGEAPKGQ 114

Query:   128 EHAKDEHFNPLLEQISKLEEALYNIQFEQHWLEAQTERQAIVNEAMSRRAVYKAFWESTA 187
             +   + H N L E I++L  A+  ++ EQ ++E +      +N+  + R V  +F+E+  
Sbjct:   115 DMETEAHQNKLEEMINELAVAMTAVKHEQEYMEVRERIHRAINDNTNSRVVLWSFFEALV 174

Query:   188 LVGASVLQVYLLRRLFE 204
             LV  ++ Q+Y L+R FE
Sbjct:   175 LVAMTLGQIYYLKRFFE 191

GO:0005783 "endoplasmic reticulum" evidence=ISS

GO:0005793 "endoplasmic reticulum-Golgi intermediate compartment" evidence=ISS

GO:0005794 "Golgi apparatus" evidence=ISS

GO:0007030 "Golgi organization" evidence=ISS

GO:0030137 "COPI-coated vesicle" evidence=IDA

GO:0034260 "negative regulation of GTPase activity" evidence=ISS

GO:0072661 "protein targeting to plasma membrane" evidence=ISS

UNIPROTKB|C3V9V7 TMED2 "RNP24" [Bos taurus (taxid:9913)]

 Score = 193 (73.0 bits), Expect = 2.6e-15, P = 2.6e-15
 Identities = 51/197 (25%), Positives = 96/197 (48%)

Query:    10 IAAILAFIFSPQAVYGIRFVIDREECFSHNVQYEGDTVHASFVVIKADSSWYSSHDGVDL 69
             +  +LA + +  + Y +      EECF   V   G  +   F V  A+  +      +D+
Sbjct:     7 LLVLLAALLATASGYFVSIDAHAEECFFERVT-SGTKMGLIFEV--AEGGFLD----IDV 59

Query:    70 VVKGPASDQIHDFRDKISEKFEFVAHHKGVHRFCFTNK--SPYHETIDFDVHVGHFSYYD 127
              + GP +  I+    + S K+ F AH  G ++FCF+N+  +   + + F + +G      
Sbjct:    60 EITGPDNKGIYKGDRESSGKYTFAAHMDGTYKFCFSNRMSTMTPKIVMFTIDIGEAPKGQ 119

Query:   128 EHAKDEHFNPLLEQISKLEEALYNIQFEQHWLEAQTERQAIVNEAMSRRAVYKAFWESTA 187
             +   + H N L E I++L  A+  ++ EQ ++E +      +N+  + R V  +F+E+  
Sbjct:   120 DMETEAHQNKLEEMINELAVAMTAVKHEQEYMEVRERIHRAINDNTNSRVVLWSFFEALV 179

Query:   188 LVGASVLQVYLLRRLFE 204
             LV  ++ Q+Y L+R FE
Sbjct:   180 LVAMTLGQIYYLKRFFE 196

GO:0016021 "integral to membrane" evidence=IEA

GO:0006810 "transport" evidence=IEA

UNIPROTKB|E2RGZ5 TMED2 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 193 (73.0 bits), Expect = 2.6e-15, P = 2.6e-15
 Identities = 51/197 (25%), Positives = 96/197 (48%)

Query:    10 IAAILAFIFSPQAVYGIRFVIDREECFSHNVQYEGDTVHASFVVIKADSSWYSSHDGVDL 69
             +  +LA + +  + Y +      EECF   V   G  +   F V  A+  +      +D+
Sbjct:     7 LLVLLAALLATASGYFVSIDAHAEECFFERVT-SGTKMGLIFEV--AEGGFLD----IDV 59

Query:    70 VVKGPASDQIHDFRDKISEKFEFVAHHKGVHRFCFTNK--SPYHETIDFDVHVGHFSYYD 127
              + GP +  I+    + S K+ F AH  G ++FCF+N+  +   + + F + +G      
Sbjct:    60 EITGPDNKGIYKGDRESSGKYTFAAHMDGTYKFCFSNRMSTMTPKIVMFTIDIGEAPKGQ 119

Query:   128 EHAKDEHFNPLLEQISKLEEALYNIQFEQHWLEAQTERQAIVNEAMSRRAVYKAFWESTA 187
             +   + H N L E I++L  A+  ++ EQ ++E +      +N+  + R V  +F+E+  
Sbjct:   120 DMETEAHQNKLEEMINELAVAMTAVKHEQEYMEVRERIHRAINDNTNSRVVLWSFFEALV 179

Query:   188 LVGASVLQVYLLRRLFE 204
             LV  ++ Q+Y L+R FE
Sbjct:   180 LVAMTLGQIYYLKRFFE 196

GO:0072661 "protein targeting to plasma membrane" evidence=IEA

GO:0034260 "negative regulation of GTPase activity" evidence=IEA

GO:0007030 "Golgi organization" evidence=IEA

GO:0005794 "Golgi apparatus" evidence=IEA

GO:0005793 "endoplasmic reticulum-Golgi intermediate compartment" evidence=IEA

GO:0005783 "endoplasmic reticulum" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

UNIPROTKB|F2Z501 TMED2 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 193 (73.0 bits), Expect = 2.6e-15, P = 2.6e-15
 Identities = 51/197 (25%), Positives = 96/197 (48%)

Query:    10 IAAILAFIFSPQAVYGIRFVIDREECFSHNVQYEGDTVHASFVVIKADSSWYSSHDGVDL 69
             +  +LA + +  + Y +      EECF   V   G  +   F V  A+  +      +D+
Sbjct:     7 LLVLLAALLATASGYFVSIDAHAEECFFERVT-SGTKMGLIFEV--AEGGFLD----IDV 59

Query:    70 VVKGPASDQIHDFRDKISEKFEFVAHHKGVHRFCFTNK--SPYHETIDFDVHVGHFSYYD 127
              + GP +  I+    + S K+ F AH  G ++FCF+N+  +   + + F + +G      
Sbjct:    60 EITGPDNKGIYKGDRESSGKYTFAAHMDGTYKFCFSNRMSTMTPKIVMFTIDIGEAPKGQ 119

Query:   128 EHAKDEHFNPLLEQISKLEEALYNIQFEQHWLEAQTERQAIVNEAMSRRAVYKAFWESTA 187
             +   + H N L E I++L  A+  ++ EQ ++E +      +N+  + R V  +F+E+  
Sbjct:   120 DMETEAHQNKLEEMINELAVAMTAVKHEQEYMEVRERIHRAINDNTNSRVVLWSFFEALV 179

Query:   188 LVGASVLQVYLLRRLFE 204
             LV  ++ Q+Y L+R FE
Sbjct:   180 LVAMTLGQIYYLKRFFE 196

GO:0072661 "protein targeting to plasma membrane" evidence=IEA

GO:0036342 "post-anal tail morphogenesis" evidence=IEA

GO:0035264 "multicellular organism growth" evidence=IEA

GO:0034260 "negative regulation of GTPase activity" evidence=IEA

GO:0032525 "somite rostral/caudal axis specification" evidence=IEA

GO:0010628 "positive regulation of gene expression" evidence=IEA

GO:0007030 "Golgi organization" evidence=IEA

GO:0005794 "Golgi apparatus" evidence=IEA

GO:0005793 "endoplasmic reticulum-Golgi intermediate compartment" evidence=IEA

GO:0005783 "endoplasmic reticulum" evidence=IEA

GO:0001947 "heart looping" evidence=IEA

GO:0001893 "maternal placenta development" evidence=IEA

GO:0001892 "embryonic placenta development" evidence=IEA

GO:0001843 "neural tube closure" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

RGD|69243 Tmed2 "transmembrane emp24 domain trafficking protein 2" [Rattus norvegicus (taxid:10116)]

 Score = 193 (73.0 bits), Expect = 2.6e-15, P = 2.6e-15
 Identities = 51/197 (25%), Positives = 96/197 (48%)

Query:    10 IAAILAFIFSPQAVYGIRFVIDREECFSHNVQYEGDTVHASFVVIKADSSWYSSHDGVDL 69
             +  +LA + +  + Y +      EECF   V   G  +   F V  A+  +      +D+
Sbjct:     7 LLVLLAALLATASGYFVSIDAHAEECFFERVT-SGTKMGLIFEV--AEGGFLD----IDV 59

Query:    70 VVKGPASDQIHDFRDKISEKFEFVAHHKGVHRFCFTNK--SPYHETIDFDVHVGHFSYYD 127
              + GP +  I+    + S K+ F AH  G ++FCF+N+  +   + + F + +G      
Sbjct:    60 EITGPDNKGIYKGDRESSGKYTFAAHMDGTYKFCFSNRMSTMTPKIVMFTIDIGEAPKGQ 119

Query:   128 EHAKDEHFNPLLEQISKLEEALYNIQFEQHWLEAQTERQAIVNEAMSRRAVYKAFWESTA 187
             +   + H N L E I++L  A+  ++ EQ ++E +      +N+  + R V  +F+E+  
Sbjct:   120 DMETEAHQNKLEEMINELAVAMTAVKHEQEYMEVRERIHRAINDNTNSRVVLWSFFEALV 179

Query:   188 LVGASVLQVYLLRRLFE 204
             LV  ++ Q+Y L+R FE
Sbjct:   180 LVAMTLGQIYYLKRFFE 196

GO:0001701 "in utero embryonic development" evidence=ISO

GO:0001756 "somitogenesis" evidence=ISO

GO:0001843 "neural tube closure" evidence=IEA;ISO

GO:0001892 "embryonic placenta development" evidence=IEA;ISO

GO:0001893 "maternal placenta development" evidence=IEA

GO:0001947 "heart looping" evidence=IEA;ISO

GO:0005515 "protein binding" evidence=IPI

GO:0005783 "endoplasmic reticulum" evidence=ISO;ISS

GO:0005789 "endoplasmic reticulum membrane" evidence=IEA

GO:0005793 "endoplasmic reticulum-Golgi intermediate compartment" evidence=ISO;ISS

GO:0005794 "Golgi apparatus" evidence=ISO;ISS

GO:0006810 "transport" evidence=IEA

GO:0006886 "intracellular protein transport" evidence=ISO;NAS

GO:0006903 "vesicle targeting" evidence=NAS

GO:0007030 "Golgi organization" evidence=ISO;ISS

GO:0010628 "positive regulation of gene expression" evidence=IEA;ISO

GO:0016021 "integral to membrane" evidence=IEA;IDA

GO:0030137 "COPI-coated vesicle" evidence=ISS;IDA

GO:0030663 "COPI-coated vesicle membrane" evidence=IEA

GO:0032525 "somite rostral/caudal axis specification" evidence=IEA;ISO

GO:0032580 "Golgi cisterna membrane" evidence=IEA

GO:0033116 "endoplasmic reticulum-Golgi intermediate compartment membrane" evidence=IEA

GO:0034260 "negative regulation of GTPase activity" evidence=ISO;ISS

GO:0035264 "multicellular organism growth" evidence=IEA;ISO

GO:0036342 "post-anal tail morphogenesis" evidence=IEA;ISO

GO:0042589 "zymogen granule membrane" evidence=IDA

GO:0043231 "intracellular membrane-bounded organelle" evidence=ISO

GO:0072661 "protein targeting to plasma membrane" evidence=ISO;ISS

UNIPROTKB|Q15363 TMED2 "Transmembrane emp24 domain-containing protein 2" [Homo sapiens (taxid:9606)]

 Score = 192 (72.6 bits), Expect = 3.3e-15, P = 3.3e-15
 Identities = 51/197 (25%), Positives = 96/197 (48%)

Query:    10 IAAILAFIFSPQAVYGIRFVIDREECFSHNVQYEGDTVHASFVVIKADSSWYSSHDGVDL 69
             +  +LA + +  + Y +      EECF   V   G  +   F V  A+  +      +D+
Sbjct:     7 LLVLLAALLATVSGYFVSIDAHAEECFFERVT-SGTKMGLIFEV--AEGGFLD----IDV 59

Query:    70 VVKGPASDQIHDFRDKISEKFEFVAHHKGVHRFCFTNK--SPYHETIDFDVHVGHFSYYD 127
              + GP +  I+    + S K+ F AH  G ++FCF+N+  +   + + F + +G      
Sbjct:    60 EITGPDNKGIYKGDRESSGKYTFAAHMDGTYKFCFSNRMSTMTPKIVMFTIDIGEAPKGQ 119

Query:   128 EHAKDEHFNPLLEQISKLEEALYNIQFEQHWLEAQTERQAIVNEAMSRRAVYKAFWESTA 187
             +   + H N L E I++L  A+  ++ EQ ++E +      +N+  + R V  +F+E+  
Sbjct:   120 DMETEAHQNKLEEMINELAVAMTAVKHEQEYMEVRERIHRAINDNTNSRVVLWSFFEALV 179

Query:   188 LVGASVLQVYLLRRLFE 204
             LV  ++ Q+Y L+R FE
Sbjct:   180 LVAMTLGQIYYLKRFFE 196

GO:0001843 "neural tube closure" evidence=IEA

GO:0001892 "embryonic placenta development" evidence=IEA

GO:0001893 "maternal placenta development" evidence=IEA

GO:0001947 "heart looping" evidence=IEA

GO:0010628 "positive regulation of gene expression" evidence=IEA

GO:0032525 "somite rostral/caudal axis specification" evidence=IEA

GO:0035264 "multicellular organism growth" evidence=IEA

GO:0036342 "post-anal tail morphogenesis" evidence=IEA

GO:0005789 "endoplasmic reticulum membrane" evidence=IEA

GO:0030663 "COPI-coated vesicle membrane" evidence=IEA

GO:0032580 "Golgi cisterna membrane" evidence=IEA

GO:0033116 "endoplasmic reticulum-Golgi intermediate compartment membrane" evidence=IEA

GO:0005783 "endoplasmic reticulum" evidence=IDA

GO:0005793 "endoplasmic reticulum-Golgi intermediate compartment" evidence=IDA

GO:0005794 "Golgi apparatus" evidence=IDA

GO:0034260 "negative regulation of GTPase activity" evidence=IDA

GO:0048205 "COPI coating of Golgi vesicle" evidence=TAS

GO:0007030 "Golgi organization" evidence=IMP

GO:0072661 "protein targeting to plasma membrane" evidence=IDA

GO:0030137 "COPI-coated vesicle" evidence=ISS

GO:0006888 "ER to Golgi vesicle-mediated transport" evidence=TAS

GO:0006886 "intracellular protein transport" evidence=IDA

GO:0035459 "cargo loading into vesicle" evidence=TAS

GO:0048208 "COPII vesicle coating" evidence=TAS

GO:0016021 "integral to membrane" evidence=ISS

GO:0042589 "zymogen granule membrane" evidence=ISS

GO:0005515 "protein binding" evidence=IPI

GO:0043231 "intracellular membrane-bounded organelle" evidence=IDA

WB|WBGene00004766 sel-9 [Caenorhabditis elegans (taxid:6239)]

 Score = 189 (71.6 bits), Expect = 6.9e-15, P = 6.9e-15
 Identities = 60/199 (30%), Positives = 99/199 (49%)

Query:    13 ILAFIF-SPQAVYGIRFVIDREECFSHNVQYEGDTVHASFVVIKADSSWYSSHDGVDLVV 71
             ILA +F +P A Y I    + E+CF   +   G  +   F V  A+  +      +D+ +
Sbjct:     7 ILAVLFVTPAASYFIHVDANEEQCFFDRLT-SGTKMGLMFEV--AEGGFLD----IDVKI 59

Query:    72 KGPASDQIHDFRDKISEKFEFVAHHKGVHRFCFTNK--SPYHETIDFDVHVG--HFSYYD 127
              GP + +I+    + S KF F AH  GV+ +CF NK  +   + + F V +   H     
Sbjct:    60 TGPDNKEIYKGERESSGKFTFAAHMDGVYTYCFGNKMSTMTPKAVMFTVEITEPHQQAPG 119

Query:   128 EHA-KDEHFNPLLEQ-ISKLEEALYNIQFEQHWLEAQTERQAIVNEAMSRRAVYKAFWES 185
               A +D   N  LE+ + +L  AL +++ EQ ++E +      +NE  + R V  A +E+
Sbjct:   120 AAANQDAADNAKLEEMVRELSSALMSVKHEQEYMEVRERVHRNINENTNSRVVMWAAFEA 179

Query:   186 TALVGASVLQVYLLRRLFE 204
               LVG +V Q++ L+R FE
Sbjct:   180 FVLVGMTVGQIFYLKRFFE 198

GO:0006810 "transport" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0040010 "positive regulation of growth rate" evidence=IMP

GO:0040011 "locomotion" evidence=IMP

GO:0040035 "hermaphrodite genitalia development" evidence=IMP

GO:0040007 "growth" evidence=IMP

GO:0002119 "nematode larval development" evidence=IMP

GO:0008593 "regulation of Notch signaling pathway" evidence=IGI

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q9S7M9	P24B2_ARATH	No assigned EC number	0.76	0.9433	0.9615	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: GSVIVG00033393001 SubName- Full=Chromosome chr19 scaffold_66, whole genome shotgun sequence; (211 aa) (Vitis vinifera)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	212
pfam01105	178	pfam01105, EMP24_GP25L, emp24/gp25L/p24 family/GOL	3e-29

>gnl|CDD|216301 pfam01105, EMP24_GP25L, emp24/gp25L/p24 family/GOLD

 Score =  106 bits (268), Expect = 3e-29
 Identities = 58/187 (31%), Positives = 90/187 (48%), Gaps = 16/187 (8%)

Query: 25  GIRFVID--REECFSHNVQYEGDTVHASFVVIKADSSWYSSHDGVDLVVKGPASDQ---I 79
            + F +    +ECF   V  +G  V  S+ VI         +  +D  +  P  +     
Sbjct: 1   ALTFELPAGEKECFYEEVP-KGTLVTGSYQVISGG------NLDIDFTITDPDGNGNVIY 53

Query: 80  HDFRDKISEKFEFVAHHKGVHRFCFTNK--SPYHETIDFDVHVGHFSYYDEHAKDEHFNP 137
                K   KF F A   G ++FCF+N   +   +T+ FD+ VG      + AK E  +P
Sbjct: 54  SKEDRKSGGKFSFTATESGEYKFCFSNSFSTFSSKTVSFDIKVG--EEAKDIAKKEKLDP 111

Query: 138 LLEQISKLEEALYNIQFEQHWLEAQTERQAIVNEAMSRRAVYKAFWESTALVGASVLQVY 197
           L E++ KLE+ L +I+ EQ +L  +  R    NE+ + R V+ +  +   L+G SVLQVY
Sbjct: 112 LEEELKKLEDQLNDIKREQKYLREREARHRETNESTNSRVVWWSIIQILVLIGVSVLQVY 171

Query: 198 LLRRLFE 204
            L+R FE
Sbjct: 172 YLKRFFE 178

Members of this family are implicated in bringing cargo forward from the ER and binding to coat proteins by their cytoplasmic domains. This domain corresponds closely to the beta-strand rich GOLD domain described in. The GOLD domain is always found combined with lipid- or membrane-association domains. Length = 178

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	212
KOG1692	201	consensus Putative cargo transport protein EMP24 (	100.0
KOG1690	215	consensus emp24/gp25L/p24 family of membrane traff	100.0
KOG1691	210	consensus emp24/gp25L/p24 family of membrane traff	100.0
KOG1693	209	consensus emp24/gp25L/p24 family of membrane traff	100.0
KOG3287	236	consensus Membrane trafficking protein, emp24/gp25	100.0
PF01105	183	EMP24_GP25L: emp24/gp25L/p24 family/GOLD; InterPro	100.0
PF01835	99	A2M_N: MG2 domain; InterPro: IPR002890 The protein	94.39
PF11466	30	Doppel: Prion-like protein Doppel; InterPro: IPR02	93.21
PF04151	70	PPC: Bacterial pre-peptidase C-terminal domain; In	91.05
smart00557	93	IG_FLMN Filamin-type immunoglobulin domains. These	90.53
PF13897	136	GOLD_2: Golgi-dynamics membrane-trafficking	88.21
PF09315	179	DUF1973: Domain of unknown function (DUF1973); Int	87.95
PF00630	101	Filamin: Filamin/ABP280 repeat; InterPro: IPR01786	87.64
PF13860	81	FlgD_ig: FlgD Ig-like domain; PDB: 3C12_A 3OSV_A.	84.6
PF11589	106	DUF3244: Domain of unknown function (DUF3244); Int	84.09
PF10779	71	XhlA: Haemolysin XhlA; InterPro: IPR019715 Haemoly	81.98

>KOG1692 consensus Putative cargo transport protein EMP24 (p24 protein family) [Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=5.3e-49  Score=296.18  Aligned_cols=191  Identities=40%  Similarity=0.617  Sum_probs=179.7

Q ss_pred             HHHHHHHHhhhccceEEEEeCCcceeeeecCCCCcEEEEEEEEEECCCCCCCCCCceEEEEEcCCCCeEecccccccceE
Q 028195           11 AAILAFIFSPQAVYGIRFVIDREECFSHNVQYEGDTVHASFVVIKADSSWYSSHDGVDLVVKGPASDQIHDFRDKISEKF   90 (212)
Q Consensus        11 ~~~~~~~~~~~~~~~l~f~i~~~~Cf~e~~~~~~~~i~~~y~v~~~~~~~~~~~~~i~~~i~dp~g~~v~~~~~~~~g~~   90 (212)
                      .+++++|++...+..+++++.+++||+|++. .|+.++++|+|.+|+      ..++++.|++|+|+.+++..+.+.|+|
T Consensus         8 ~vll~~L~~~~~~~~is~~ah~eeCf~e~~~-~gd~~~vsF~v~~gg------~~~vd~~I~gP~~~~i~~~~~~ssgk~   80 (201)
T KOG1692|consen    8 IVLLGLLFISAAGYGISLDAHEEECFFENLE-EGDKLSVSFEVIDGG------FLGVDVEITGPDGKIIHKGKRESSGKY   80 (201)
T ss_pred             HHHHHHHHHHhhheeEEEccchhhhHhhhhc-cCCEEEEEEEEecCC------ccceeEEEECCCCchhhhcccccCceE
Confidence            3445566666888888888899999999999 899999999999986      679999999999999999998999999


Q ss_pred             EEEeccccceeeeeEecCC--CceEEEEEEEEcccCCCCccccccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028195           91 EFVAHHKGVHRFCFTNKSP--YHETIDFDVHVGHFSYYDEHAKDEHFNPLLEQISKLEEALYNIQFEQHWLEAQTERQAI  168 (212)
Q Consensus        91 ~f~~~~~G~y~~Cf~n~~~--~~~~V~f~~~~g~~~d~~~~a~~e~~~~l~~~l~~l~~~l~~i~~~q~y~~~re~~~~~  168 (212)
                      +|+++..|.|++||+|..+  .+|.|.|++++|+.++.++.++++|.++|++.+++|.+.|..++.||+|+..|++.||.
T Consensus        81 tF~a~~~G~Y~fCF~N~~s~mtpk~V~F~ihvg~~~~~~d~~~d~~~~~L~~~I~eL~~al~~Vk~EQeY~~~Rer~Hr~  160 (201)
T KOG1692|consen   81 TFTAPKKGTYTFCFSNKMSTMTPKTVMFTIHVGHAPQRDDLAKDAHQNKLEEMIRELSEALTSVKHEQEYMEARERIHRN  160 (201)
T ss_pred             EEEecCCceEEEEecCCCCCCCceEEEEEEEEeeccccchhcccccccHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence            9999999999999999999  59999999999999888888999999999999999999999999999999999999999


Q ss_pred             HHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccc
Q 028195          169 VNEAMSRRAVYKAFWESTALVGASVLQVYLLRRLFERKLG  208 (212)
Q Consensus       169 ~~es~~~rv~~~si~~i~vli~~~~~Qv~~lkrfF~~k~~  208 (212)
                      ++|+|++|+.|||++|.++||+++++|||||||||+.|++
T Consensus       161 ~nEntn~RVv~wsife~~vLi~~s~~QVyYLkRfFEvkrv  200 (201)
T KOG1692|consen  161 TNENTNSRVVLWSIFEALVLIAMSVLQVYYLKRFFEVKRV  200 (201)
T ss_pred             hhhcccceeehHHHHHHHHHHHHHHHHHHHHHHhheeeec
Confidence            9999999999999999999999999999999999999875

>KOG1690 consensus emp24/gp25L/p24 family of membrane trafficking proteins [Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=1.1e-42  Score=262.87  Aligned_cols=197  Identities=19%  Similarity=0.299  Sum_probs=172.0

Q ss_pred             HHHHHHHHHhhhccceEEEEeC--CcceeeeecCCCCcEEEEEEEEEECCC---CCC-CCCCceEEEEEcCCCC--eEec
Q 028195           10 IAAILAFIFSPQAVYGIRFVID--REECFSHNVQYEGDTVHASFVVIKADS---SWY-SSHDGVDLVVKGPASD--QIHD   81 (212)
Q Consensus        10 ~~~~~~~~~~~~~~~~l~f~i~--~~~Cf~e~~~~~~~~i~~~y~v~~~~~---~~~-~~~~~i~~~i~dp~g~--~v~~   81 (212)
                      +.++++|++++..+.|++|++.  +++||.+++| +++.+.|+|.+.-.+.   .|. .++.++.+.|.+|.++  +|..
T Consensus         5 ~~~~lll~~l~~~~~a~yFy~~~~e~KCF~eelp-k~tmv~G~yk~qlyd~~~~~y~~~p~~gm~VeV~e~fdnnh~Vl~   83 (215)
T KOG1690|consen    5 MRLLLLLLLLATQVQALYFYIAGTEKKCFIEELP-KGTMVTGNYKAQLYDDQLKGYGSYPNIGMHVEVKETFDNNHVVLS   83 (215)
T ss_pred             HHHHHHHHHHHhhccEEEEEecCCcccchhhhCC-CCcEEEeeeeeeeecchhcccccCCCceEEEEeecCCCCceEEEe
Confidence            4556678888999999999995  5899999999 8999999999976553   232 2356788899999766  9999


Q ss_pred             ccccccceEEEEeccccceeeeeEecCC-----CceEEEEEEEEcccCCCCccccccCcchHHHHHHHHHHHHHHHHHHH
Q 028195           82 FRDKISEKFEFVAHHKGVHRFCFTNKSP-----YHETIDFDVHVGHFSYYDEHAKDEHFNPLLEQISKLEEALYNIQFEQ  156 (212)
Q Consensus        82 ~~~~~~g~~~f~~~~~G~y~~Cf~n~~~-----~~~~V~f~~~~g~~~d~~~~a~~e~~~~l~~~l~~l~~~l~~i~~~q  156 (212)
                      +.+.++|+|+|++..+|+|+||+....+     ...+|++++++|.+... ....++..+.++.++..|++++.+|+.||
T Consensus        84 q~~ss~G~ftFta~~~GeH~IC~~s~s~awf~~aklRvhld~qvG~~a~l-~a~~ke~~k~l~~Rv~~L~~~~~~IrkEQ  162 (215)
T KOG1690|consen   84 QQYSSEGDFTFTALTPGEHRICIQSNSTAWFNGAKLRVHLDIQVGDHANL-DAQIKETDKLLEGRVRQLNSRLESIRKEQ  162 (215)
T ss_pred             ecCCCCCceEEEccCCCceEEEEecccchhhccceEEEEEEEeeCchhhh-hhhhhhhhhhhHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999998776     26899999999987321 12336677888889999999999999999


Q ss_pred             HHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccc
Q 028195          157 HWLEAQTERQAIVNEAMSRRAVYKAFWESTALVGASVLQVYLLRRLFERKLG  208 (212)
Q Consensus       157 ~y~~~re~~~~~~~es~~~rv~~~si~~i~vli~~~~~Qv~~lkrfF~~k~~  208 (212)
                      .++|.||+++|++.||+|+|++|||++|+++|+++|+||+.+||+||.++|.
T Consensus       163 ~~~R~RE~~FR~tSES~NsRvm~Wsv~Q~vvL~~tc~wQmrhL~~FFvkqKl  214 (215)
T KOG1690|consen  163 NLQREREETFRDTSESANSRVMWWSVAQLVVLLVTCIWQMRHLKSFFVKQKL  214 (215)
T ss_pred             HHHHHHHHHHHhhhhhhcceeeehhHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence            9999999999999999999999999999999999999999999999999874

>KOG1691 consensus emp24/gp25L/p24 family of membrane trafficking proteins [Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=1e-40  Score=256.03  Aligned_cols=190  Identities=24%  Similarity=0.424  Sum_probs=174.7

Q ss_pred             HHHHHhhhccceEEEEeC--CcceeeeecCCCCcEEEEEEEEEECCCCCCCCCCceEEEEEcCCCCeEecccccccceEE
Q 028195           14 LAFIFSPQAVYGIRFVID--REECFSHNVQYEGDTVHASFVVIKADSSWYSSHDGVDLVVKGPASDQIHDFRDKISEKFE   91 (212)
Q Consensus        14 ~~~~~~~~~~~~l~f~i~--~~~Cf~e~~~~~~~~i~~~y~v~~~~~~~~~~~~~i~~~i~dp~g~~v~~~~~~~~g~~~   91 (212)
                      ++|++++..+.|+.|+++  .++|+.|++. .+..+.|.|.+.+...+   ....+++.|+||.|+.+++.++.++|+|+
T Consensus        11 ~i~~~~~~~~~a~~f~v~~~~~kCi~EeI~-~n~lv~g~y~i~~~~~~---~~~~~~~~Vts~~G~~~~~~env~~gqFa   86 (210)
T KOG1691|consen   11 LIFLLLLPLVHALRFDVPSKTTKCISEEIH-ENVLVVGDYEIINPNGD---HSHKLSVKVTSPYGNNLHSKENVTKGQFA   86 (210)
T ss_pred             HHHHHHhhhhheEEEEecCCCCEeehhhhc-cCeEEEEEEEEecCCCC---ccceEEEEEEcCCCceeehhhccccceEE
Confidence            345577889999999996  6899999999 89999999999886531   11569999999999999999999999999


Q ss_pred             EEeccccceeeeeEec--CCC---ceEEEEEEEEccc-CCCCccccccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028195           92 FVAHHKGVHRFCFTNK--SPY---HETIDFDVHVGHF-SYYDEHAKDEHFNPLLEQISKLEEALYNIQFEQHWLEAQTER  165 (212)
Q Consensus        92 f~~~~~G~y~~Cf~n~--~~~---~~~V~f~~~~g~~-~d~~~~a~~e~~~~l~~~l~~l~~~l~~i~~~q~y~~~re~~  165 (212)
                      |++.++|.|..||.+.  ...   ...|+|+++.|.+ +||+++|++++++++|.++++|++.++.|+++.-|+|.||++
T Consensus        87 Fta~e~~~y~~Cf~~~~~~~~p~~~~~I~ld~k~Gv~akdw~~IAKkeklep~E~elrrLed~~~sI~~e~~YLr~REee  166 (210)
T KOG1691|consen   87 FTAEESGMYEACFTADVPGHKPETKRSIDLDWKTGVEAKDWDSIAKKEKLEPLEVELRRLEDLVESIHEEMYYLREREEE  166 (210)
T ss_pred             EEeccCCcEEEEEecccCCCCCCcceEEEEEeeccccccchHHHHhhhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999993  332   4889999999987 799999999999999999999999999999999999999999


Q ss_pred             HHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcc
Q 028195          166 QAIVNEAMSRRAVYKAFWESTALVGASVLQVYLLRRLFERKL  207 (212)
Q Consensus       166 ~~~~~es~~~rv~~~si~~i~vli~~~~~Qv~~lkrfF~~k~  207 (212)
                      .|+++++||+|+.|+|++-++++++++.||++|||+||++||
T Consensus       167 mr~~nesTNsrv~~fSi~Sl~v~~~va~~QvlyLK~fF~kKK  208 (210)
T KOG1691|consen  167 MRNTNESTNSRVAWFSILSLVVLLSVAGWQVLYLKRFFQKKK  208 (210)
T ss_pred             HHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence            999999999999999999999999999999999999999997

>KOG1693 consensus emp24/gp25L/p24 family of membrane trafficking proteins [Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=4e-41  Score=254.96  Aligned_cols=187  Identities=23%  Similarity=0.365  Sum_probs=166.1

Q ss_pred             HHHhhhccceEEEEeC--CcceeeeecCCCCcEEEEEEEEEECCCCCCCCCCceEEEEEcCCCCeEecccccccceEEEE
Q 028195           16 FIFSPQAVYGIRFVID--REECFSHNVQYEGDTVHASFVVIKADSSWYSSHDGVDLVVKGPASDQIHDFRDKISEKFEFV   93 (212)
Q Consensus        16 ~~~~~~~~~~l~f~i~--~~~Cf~e~~~~~~~~i~~~y~v~~~~~~~~~~~~~i~~~i~dp~g~~v~~~~~~~~g~~~f~   93 (212)
                      |+.++..+..++|+++  .++|||+++++.++.++.+|+|..||      +.+|++.|++|+|++|+...++..+.|.|+
T Consensus        14 la~~~s~a~elTfeLp~~aKqC~Y~d~~~~~~~~~~~fqV~tGG------~fDVD~~I~aPdgkvI~~~~kk~~~~~~f~   87 (209)
T KOG1693|consen   14 LALLFSEASELTFELPDNAKQCFYEDLKKDDDTTSFEFQVQTGG------HFDVDYDIEAPDGKVIYSEKKKRYDSFLFK   87 (209)
T ss_pred             HHHHhhhcccEEEEcCCcchhheeeecccCCceEEEEEEEEeCC------ceeeEEEEECCCCCEEeeccccccccEEEE
Confidence            3343444789999996  68999999995445599999999997      669999999999999999999999999999


Q ss_pred             eccccceeeeeEecCCC--ceEEEEEEEEcccCCCCcc--ccccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028195           94 AHHKGVHRFCFTNKSPY--HETIDFDVHVGHFSYYDEH--AKDEHFNPLLEQISKLEEALYNIQFEQHWLEAQTERQAIV  169 (212)
Q Consensus        94 ~~~~G~y~~Cf~n~~~~--~~~V~f~~~~g~~~d~~~~--a~~e~~~~l~~~l~~l~~~l~~i~~~q~y~~~re~~~~~~  169 (212)
                      +++.|+|++||+|..++  +|.|.+++++|.+.+..+.  +....++.++..+..+.+.|+.|.+.|.|.|.||.+.+.+
T Consensus        88 ae~~G~Y~fCFsN~fstf~~Kiv~~~~q~~~~~~~~~~~~~~~~~~~~mena~~~I~~~L~~I~~~q~y~R~RE~rn~~t  167 (209)
T KOG1693|consen   88 AEGKGEYTFCFSNEFSTFSHKIVYMDFQVGEEPPLHPAVSNRDTALTQMENAIVEIHRALNKIDDTQTYYRLREARNRST  167 (209)
T ss_pred             EecceEEEEEecCccccccceEeeehhhhccccccCccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccc
Confidence            99999999999999985  8999999999977443222  2344567899999999999999999999999999999999


Q ss_pred             HHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccc
Q 028195          170 NEAMSRRAVYKAFWESTALVGASVLQVYLLRRLFERKLG  208 (212)
Q Consensus       170 ~es~~~rv~~~si~~i~vli~~~~~Qv~~lkrfF~~k~~  208 (212)
                      .+|+++|++|||++++++++++++.|+..||.||+.|+.
T Consensus       168 v~st~~Rv~~~Sl~e~~~vv~iSi~Qv~ilk~fFt~~r~  206 (209)
T KOG1693|consen  168 VESTNSRVTWWSLLEIIAVVVISIAQVFILKFFFTDRRK  206 (209)
T ss_pred             hhcccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhccCc
Confidence            999999999999999999999999999999999998864

>KOG3287 consensus Membrane trafficking protein, emp24/gp25L/p24 family [Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=6.3e-34  Score=218.19  Aligned_cols=180  Identities=20%  Similarity=0.359  Sum_probs=156.0

Q ss_pred             ceEEEEeC--CcceeeeecCCCCcEEEEEEEEEECCCCCCCCCCceEEEEEcCCCCeEecccccccceEEEEecccccee
Q 028195           24 YGIRFVID--REECFSHNVQYEGDTVHASFVVIKADSSWYSSHDGVDLVVKGPASDQIHDFRDKISEKFEFVAHHKGVHR  101 (212)
Q Consensus        24 ~~l~f~i~--~~~Cf~e~~~~~~~~i~~~y~v~~~~~~~~~~~~~i~~~i~dp~g~~v~~~~~~~~g~~~f~~~~~G~y~  101 (212)
                      ..++++++  +++||+..++ .+..+..+|+|.+|.     .+.+|++.+.+|.|.++.+...+.+|.+++...++|.|+
T Consensus        34 ~dftv~ipAGk~eCf~Q~v~-~~~tle~eyQVi~G~-----GDl~i~Ftl~~P~G~~lv~~q~k~dg~ht~e~~e~GdY~  107 (236)
T KOG3287|consen   34 YDFTVMIPAGKTECFYQPVP-QGATLEVEYQVIDGA-----GDLDIDFTLLNPAGEVLVSDQRKVDGVHTVEVTETGDYQ  107 (236)
T ss_pred             cceEEEecCCCceeeeeecc-CCeEEEEEEEEEecC-----CccceeeEEeCCCccEEeecccccCceeEeeccCCcceE
Confidence            45667774  6899999999 899999999999983     257899999999999999998899999999999999999


Q ss_pred             eeeEecCCC--ceEEEEEEEEccc---C----CCCcccc-----ccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028195          102 FCFTNKSPY--HETIDFDVHVGHF---S----YYDEHAK-----DEHFNPLLEQISKLEEALYNIQFEQHWLEAQTERQA  167 (212)
Q Consensus       102 ~Cf~n~~~~--~~~V~f~~~~g~~---~----d~~~~a~-----~e~~~~l~~~l~~l~~~l~~i~~~q~y~~~re~~~~  167 (212)
                      +||+|+.+.  .|.|.|++-+...   .    .|.+-.+     .-.++.+++.+.++..+++.....|..+|.||.|+|
T Consensus       108 ~CfDNsFS~fs~K~Vffeli~~~~g~~~e~~e~w~k~~e~~~~Ld~kl~di~~~i~~i~~nl~k~~~~q~~lRa~EaRDr  187 (236)
T KOG3287|consen  108 VCFDNSFSTFSRKLVFFELILDAHGEFYEGDETWHKYKERTEQLDVKLDDIEDSIGTIKNNLNKMWQYQALLRAREARDR  187 (236)
T ss_pred             EEEcCccccccceEEEEEEEeccccchhccchhHhhhhhhhhhhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhH
Confidence            999999995  7999999954322   1    1111111     235778889999999999999999999999999999


Q ss_pred             HHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccc
Q 028195          168 IVNEAMSRRAVYKAFWESTALVGASVLQVYLLRRLFERKLGM  209 (212)
Q Consensus       168 ~~~es~~~rv~~~si~~i~vli~~~~~Qv~~lkrfF~~k~~~  209 (212)
                      .+.+|+..||.|||.+|+.+||+++..|+++|||+|+.|+.+
T Consensus       188 ~L~esNf~rVN~WS~vq~~vmi~v~~iQVf~lrslFe~~~~~  229 (236)
T KOG3287|consen  188 NLQESNFDRVNFWSMVQTLVMILVGIIQVFMLRSLFEVKSKS  229 (236)
T ss_pred             HHHhcccchhhHHHHHHHHHHHHHhhhhhhhhHHHhcCCCCc
Confidence            999999999999999999999999999999999999988654

>PF01105 EMP24_GP25L: emp24/gp25L/p24 family/GOLD; InterPro: IPR009038 The GOLD (for Golgi dynamics) domain is a protein module found in several eukaryotic Golgi and lipid-traffic proteins

Probab=100.00  E-value=2.6e-37  Score=240.01  Aligned_cols=174  Identities=32%  Similarity=0.569  Sum_probs=5.6

Q ss_pred             eEEEEeC--CcceeeeecCCCCcEEEEEEEEEECCCCCCCCCCceEEEEE--cCCCCeEeccccc-ccceEEEEeccccc
Q 028195           25 GIRFVID--REECFSHNVQYEGDTVHASFVVIKADSSWYSSHDGVDLVVK--GPASDQIHDFRDK-ISEKFEFVAHHKGV   99 (212)
Q Consensus        25 ~l~f~i~--~~~Cf~e~~~~~~~~i~~~y~v~~~~~~~~~~~~~i~~~i~--dp~g~~v~~~~~~-~~g~~~f~~~~~G~   99 (212)
                      |++|+++  +++||+++++ +++.+.++|++.+++     ...++++.|+  +|+|+.++.+.+. ++|+|+|+++++|+
T Consensus         1 a~~f~l~~g~~~Cf~e~v~-~~~~i~~~y~v~~~~-----~~~~v~~~i~~~~~~~~~i~~~~~~~~~~~f~f~~~~~G~   74 (183)
T PF01105_consen    1 ALTFELEPGETECFYEEVP-KGTTIRGSYRVTDGG-----GAYDVDFTIRDPDPNGEVIYSKSDKESEGSFSFTAKESGE   74 (183)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             CEEEEECCCCcEEEEEEcC-CCcEEEEEEEEeecc-----ccceEEEEEEecccCCceeeeecccccCCcEEEEeccCCC
Confidence            5788884  6899999999 699999999999875     1458999999  5566999888555 45799999999999


Q ss_pred             eeeeeEecCCC--c-eEEEEEEEEccc-CCCCccccccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 028195          100 HRFCFTNKSPY--H-ETIDFDVHVGHF-SYYDEHAKDEHFNPLLEQISKLEEALYNIQFEQHWLEAQTERQAIVNEAMSR  175 (212)
Q Consensus       100 y~~Cf~n~~~~--~-~~V~f~~~~g~~-~d~~~~a~~e~~~~l~~~l~~l~~~l~~i~~~q~y~~~re~~~~~~~es~~~  175 (212)
                      |++||+|+.+.  + +.|+|++++|.+ .++++.++++++++++..|++|.+.++.++++|+|++.|+.+|+++++++++
T Consensus        75 y~iCf~n~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~i~~~q~~~~~r~~~~~~~~es~~~  154 (183)
T PF01105_consen   75 YQICFDNSSSSFSPSKRVSFDIDVGNENKDYKNVAKKEHLDPLEESLEKLESNLKEIKDEQKYLREREERHRQLNESTNS  154 (183)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             EEEEEEcCCCCccccEEEEEEEEEeecccchhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence            99999999985  4 999999999865 3566788899999999999999999999999999999999999999999999


Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 028195          176 RAVYKAFWESTALVGASVLQVYLLRRLFE  204 (212)
Q Consensus       176 rv~~~si~~i~vli~~~~~Qv~~lkrfF~  204 (212)
                      |++||+++++++++++++||+++||+||+
T Consensus       155 ~i~~~si~~~~vli~~~~~Qv~~lk~~f~  183 (183)
T PF01105_consen  155 RIMWWSIIQIVVLILVSVWQVYYLKKFFK  183 (183)
T ss_dssp             -----------------------HHHHHH
T ss_pred             eEEhHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence            99999999999999999999999999996

It is typically between 90 and 150 amino acids long. Most of the size difference observed in the GOLD-domain superfamily is traceable to a single large low-complexity insert that is seen in some versions of the domain. With the exception of the p24 proteins, which have a simple architecture with the GOLD domain as their only globular domain, all other GOLD-domain proteins contain additional conserved globular domains. In these proteins, the GOLD domain co-occurs with lipid-, sterol- or fatty acid-binding domains such as PH, CRAL-TRIO, FYVE oxysterol binding- and acyl CoA-binding domains, suggesting that these proteins may interact with membranes. The GOLD domain can also be found associated with a RUN domain, which may have a role in the interaction of various proteins with cytoskeletal filaments. The GOLD domain is predicted to mediate diverse protein-protein interactions []. A secondary structure prediction for the GOLD domain reveals that it is likely to adopt a compact all-beta-fold structure with six to seven strands. Most of the sequence conservation is centred on the hydrophobic cores that support these predicted strands. The predicted secondary-structure elements and the size of the conserved core of the domain suggests that it may form a beta- sandwich fold with the strands arranged in two beta sheets stacked on each other []. Some proteins known to contain a GOLD domain are listed below: Eukaryotic proteins of the p24 family. Animal Sec14-like proteins. They are involved in secretion. Human Golgi resident protein GCP60. It interacts with the Golgi integral membrane protein Giantin. Yeast oxysterol-binding protein homologue 3 (OSH3). ; GO: 0006810 transport, 0016021 integral to membrane; PDB: 1P23_A 1M23_A.

>PF01835 A2M_N: MG2 domain; InterPro: IPR002890 The proteinase-binding alpha-macroglobulins (A2M) [] are large glycoproteins found in the plasma of vertebrates, in the hemolymph of some invertebrates and in reptilian and avian egg white

Probab=94.39  E-value=1.1  Score=30.77  Aligned_cols=67  Identities=18%  Similarity=0.269  Sum_probs=43.3

Q ss_pred             CCcEEEEEEEEEECCC-CCCCCCCceEEEEEcCCCCeEecccc---cccceE--EEEecc---ccceeeeeEecCC
Q 028195           43 EGDTVHASFVVIKADS-SWYSSHDGVDLVVKGPASDQIHDFRD---KISEKF--EFVAHH---KGVHRFCFTNKSP  109 (212)
Q Consensus        43 ~~~~i~~~y~v~~~~~-~~~~~~~~i~~~i~dp~g~~v~~~~~---~~~g~~--~f~~~~---~G~y~~Cf~n~~~  109 (212)
                      +|+.|.+.--+.+.+. ...+.+..+.+.|.||+|+.+.....   ...|.+  .|..+.   .|.|++=+.....
T Consensus        13 PGetV~~~~~~~~~~~~~~~~~~~~~~v~i~dp~g~~v~~~~~~~~~~~G~~~~~~~lp~~~~~G~y~i~~~~~~~   88 (99)
T PF01835_consen   13 PGETVHFRAIVRDLDNDFKPPANSPVTVTIKDPSGNEVFRWSVNTTNENGIFSGSFQLPDDAPLGTYTIRVKTDDD   88 (99)
T ss_dssp             TTSEEEEEEEEEEECTTCSCESSEEEEEEEEETTSEEEEEEEEEETTCTTEEEEEEE--SS---EEEEEEEEETTT
T ss_pred             CCCEEEEEEEEeccccccccccCCceEEEEECCCCCEEEEEEeeeeCCCCEEEEEEECCCCCCCEeEEEEEEEccC
Confidence            5778777766555441 11123568999999999999987665   245644  444443   5999999888644

A2M-like proteins are able to inhibit all four classes of proteinases by a 'trapping' mechanism. They have a peptide stretch, called the 'bait region', which contains specific cleavage sites for different proteinases. When a proteinase cleaves the bait region, a conformational change is induced in the protein, thus trapping the proteinase. The entrapped enzyme remains active against low molecular weight substrates, whilst its activity toward larger substrates is greatly reduced, due to steric hindrance. Following cleavage in the bait region, a thiol ester bond, formed between the side chains of a cysteine and a glutamine, is cleaved and mediates the covalent binding of the A2M-like protein to the proteinase. This family includes the N-terminal region of the alpha-2-macroglobulin family. The inhibitor domains belong to MEROPS inhibitor family I39.; GO: 0004866 endopeptidase inhibitor activity; PDB: 2B39_B 3KLS_B 3PRX_C 3KM9_B 3PVM_C 3CU7_A 4E0S_A 4A5W_A 4ACQ_C 2P9R_B ....

>PF11466 Doppel: Prion-like protein Doppel; InterPro: IPR021566 Dpl is a homologue related to the prion protein (PrP)

Probab=93.21  E-value=0.051  Score=28.65  Aligned_cols=21  Identities=14%  Similarity=0.085  Sum_probs=15.5

Q ss_pred             cchhHHHHHHHHHHHHhhhcc
Q 028195            3 VGPVGFCIAAILAFIFSPQAV   23 (212)
Q Consensus         3 ~~~~~~~~~~~~~~~~~~~~~   23 (212)
                      +.++|.||+|++|.|++..++
T Consensus         2 rk~Lg~~~lAi~c~LL~s~Ls   22 (30)
T PF11466_consen    2 RKHLGGWWLAIVCVLLFSHLS   22 (30)
T ss_dssp             -SS-SSHHHHHHHHHHHHHTT
T ss_pred             ccchhhHHHHHHHHHHHHHhh
Confidence            357999999999988776653

Dpl is toxic to neurons and is expressed in the brains of mice that do not express PrP. In DHPC and SDS micelles, Dpl shoes about 40% alpha-helical structure however in aqueous solution it consists of a random coil. The alpha helical segment can adopt a transmembrane localisation also in a membrane. The unprocessed Dpl protein is thought to posses a possible channel formation mechanism which may be related to toxicity through direct interaction with cell membranes and damage to the cell membrane. ; PDB: 1Z65_A.

>PF04151 PPC: Bacterial pre-peptidase C-terminal domain; InterPro: IPR007280 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=91.05  E-value=0.81  Score=29.36  Aligned_cols=61  Identities=18%  Similarity=0.315  Sum_probs=41.3

Q ss_pred             ceeeeecCCCCcEEEEEEEEEECCCCCCCCCCceEEEEEcCCCCeEecccccc-----cceEEEEeccccceeeee
Q 028195           34 ECFSHNVQYEGDTVHASFVVIKADSSWYSSHDGVDLVVKGPASDQIHDFRDKI-----SEKFEFVAHHKGVHRFCF  104 (212)
Q Consensus        34 ~Cf~e~~~~~~~~i~~~y~v~~~~~~~~~~~~~i~~~i~dp~g~~v~~~~~~~-----~g~~~f~~~~~G~y~~Cf  104 (212)
                      ..|..+++ +++.+.+.  +...       ..+.++.+.+++|..+......+     .....|+++.+|+|-+=+
T Consensus         3 D~y~f~v~-ag~~l~i~--l~~~-------~~d~dl~l~~~~g~~~~~~d~~~~~~~~~~~i~~~~~~~GtYyi~V   68 (70)
T PF04151_consen    3 DYYSFTVP-AGGTLTID--LSGG-------SGDADLYLYDSNGNSLASYDDSSQSGGNDESITFTAPAAGTYYIRV   68 (70)
T ss_dssp             EEEEEEES-TTEEEEEE--ECET-------TSSEEEEEEETTSSSCEECCCCTCETTSEEEEEEEESSSEEEEEEE
T ss_pred             EEEEEEEc-CCCEEEEE--EcCC-------CCCeEEEEEcCCCCchhhheecCCCCCCccEEEEEcCCCEEEEEEE
Confidence            46788899 78776655  3332       22678999999987766522222     235678899999998743

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. This domain is normally found at the C terminus of secreted archaeal and bacterial peptidases, the majority of which belong to MEROPS peptidase families M4 (vibriolysin, IPR001570 from INTERPRO), M9A amd M9B (microbial collangenase, IPR002169 from INTERPRO), M28 (aminopeptidase Ap1, IPR007484 from INTERPRO) and S8 (subtilisin family peptidases, IPR000209 from INTERPRO).; GO: 0008233 peptidase activity, 0006508 proteolysis; PDB: 4DY5_B 4DXZ_A 4DY3_B 3JQW_A 3JQX_C 1NQJ_B 1NQD_A 2O8O_A 1WMF_A 1WME_A ....

>smart00557 IG_FLMN Filamin-type immunoglobulin domains

Probab=90.53  E-value=1.7  Score=29.61  Aligned_cols=45  Identities=11%  Similarity=0.185  Sum_probs=33.0

Q ss_pred             CCceEEEEEcCCCCeEecc-cccccc--eEEEEeccccceeeeeEecC
Q 028195           64 HDGVDLVVKGPASDQIHDF-RDKISE--KFEFVAHHKGVHRFCFTNKS  108 (212)
Q Consensus        64 ~~~i~~~i~dp~g~~v~~~-~~~~~g--~~~f~~~~~G~y~~Cf~n~~  108 (212)
                      ...+.+.|.+|+|+.+.-+ .+..+|  ..+|++...|.|.+.+.-..
T Consensus        31 ~~~~~v~i~~p~g~~~~~~v~d~~dGty~v~y~P~~~G~~~i~V~~~g   78 (93)
T smart00557       31 GGELEVEVTGPSGKKVPVEVKDNGDGTYTVSYTPTEPGDYTVTVKFGG   78 (93)
T ss_pred             CCcEEEEEECCCCCeeEeEEEeCCCCEEEEEEEeCCCEeEEEEEEECC
Confidence            4589999999998655432 233456  45888999999999888655

These form a rod-like structure in the actin-binding cytoskeleton protein, filamin. The C-terminal repeats of filamin bind beta1-integrin (CD29).

>PF13897 GOLD_2: Golgi-dynamics membrane-trafficking

Probab=88.21  E-value=0.69  Score=33.93  Aligned_cols=29  Identities=17%  Similarity=0.199  Sum_probs=23.8

Q ss_pred             EEEeccccceeeeeEecCC--CceEEEEEEE
Q 028195           91 EFVAHHKGVHRFCFTNKSP--YHETIDFDVH  119 (212)
Q Consensus        91 ~f~~~~~G~y~~Cf~n~~~--~~~~V~f~~~  119 (212)
                      ++..+..|.|-++|+|+.+  ..|++.+.+.
T Consensus       104 s~~c~~~GvYvLkFDNSYS~~rsK~l~Y~V~  134 (136)
T PF13897_consen  104 SHTCPGPGVYVLKFDNSYSWFRSKKLYYRVY  134 (136)
T ss_pred             EEECCCCeEEEEEeeCcceeEEeeEEEEEEE
Confidence            5677899999999999998  3788877653

>PF09315 DUF1973: Domain of unknown function (DUF1973); InterPro: IPR015394 These functionally uncharacterised domains are found in various eukaryotic calcium-dependent chloride channels

Probab=87.95  E-value=9.5  Score=29.55  Aligned_cols=55  Identities=16%  Similarity=0.211  Sum_probs=36.2

Q ss_pred             ceEEEEEcCCCCeEec-ccccccceEEEEe---ccccceeeeeEecCCCceEEEEEEEE
Q 028195           66 GVDLVVKGPASDQIHD-FRDKISEKFEFVA---HHKGVHRFCFTNKSPYHETIDFDVHV  120 (212)
Q Consensus        66 ~i~~~i~dp~g~~v~~-~~~~~~g~~~f~~---~~~G~y~~Cf~n~~~~~~~V~f~~~~  120 (212)
                      ...+.+.+|+|+.+.. ..+.......+..   .+.|.+++.+.|..+....+.+.+..
T Consensus        42 ~p~i~L~~P~G~~~~~~~~d~~~~~~~i~ipg~ae~G~W~y~i~~~~~~~q~v~vtVtS  100 (179)
T PF09315_consen   42 PPSITLTDPSGTVYTTFTTDSNSKTARIQIPGTAEVGTWTYSITNTSSSSQTVTVTVTS  100 (179)
T ss_pred             CceEEEECCCCCEEeeeEEcccccEEEEECCCCcccccEEEEEecCCCCcceEEEEEEe
Confidence            4678899999998876 2222233334443   45899999998887655555555543

>PF00630 Filamin: Filamin/ABP280 repeat; InterPro: IPR017868 The many different actin cross-linking proteins share a common architecture, consisting of a globular actin-binding domain and an extended rod

Probab=87.64  E-value=2.6  Score=28.74  Aligned_cols=43  Identities=9%  Similarity=0.245  Sum_probs=30.5

Q ss_pred             CceEEEEEcCCCC----eEe-cccccccce--EEEEeccccceeeeeEec
Q 028195           65 DGVDLVVKGPASD----QIH-DFRDKISEK--FEFVAHHKGVHRFCFTNK  107 (212)
Q Consensus        65 ~~i~~~i~dp~g~----~v~-~~~~~~~g~--~~f~~~~~G~y~~Cf~n~  107 (212)
                      ..+.+.|.+|++.    .+. .-....+|.  .+|++...|.|++++.-.
T Consensus        42 ~~~~v~i~~p~~~~~~~~~~~~v~~~~~G~y~v~y~p~~~G~y~i~V~~~   91 (101)
T PF00630_consen   42 DEFQVTITSPDGKEEPVPVPVEVIDNGDGTYTVSYTPTEPGKYKISVKIN   91 (101)
T ss_dssp             SEEEEEEESSSSESS--EEEEEEEEESSSEEEEEEEESSSEEEEEEEEES
T ss_pred             ceeEEEEeCCCCCccccccceEEEECCCCEEEEEEEeCccEeEEEEEEEC
Confidence            4678999999886    332 223345664  588899999999988754

Whereas their actin-binding domains consist of two calponin homology domains (see IPR001715 from INTERPRO), their rods fall into three families. The rod domain of the family including the Dictyostelium discoideum (Slime mould) gelation factor (ABP120) and human filamin (ABP280) is constructed from tandem repeats of a 100-residue motif that is glycine and proline rich []. The gelation factor's rod contains 6 copies of the repeat, whereas filamin has a rod constructed from 24 repeats. The resolution of the 3D structure of rod repeats from the gelation factor has shown that they consist of a beta-sandwich, formed by two beta-sheets arranged in an immunoglobulin-like fold [, ]. Because conserved residues that form the core of the repeats are preserved in filamin, the repeat structure should be common to the members of the gelation factor/filamin family. The head to tail homodimerisation is crucial to the function of the ABP120 and ABP280 proteins. This interaction involves a small portion at the distal end of the rod domains. For the gelation factor it has been shown that the carboxy-terminal repeat 6 dimerises through a double edge-to-edge extension of the beta-sheet and that repeat 5 contributes to dimerisation to some extent [, , ].; PDB: 2DI9_A 2EEC_A 2DIC_A 2EEA_A 2DMC_A 2EE9_A 2D7O_A 2D7N_A 2K7P_A 2NQC_A ....

>PF13860 FlgD_ig: FlgD Ig-like domain; PDB: 3C12_A 3OSV_A

Probab=84.60  E-value=5  Score=26.55  Aligned_cols=31  Identities=6%  Similarity=0.178  Sum_probs=22.8

Q ss_pred             cEEEEEEEEEECCCCCCCCCCceEEEEEcCCCCeEecc
Q 028195           45 DTVHASFVVIKADSSWYSSHDGVDLVVKGPASDQIHDF   82 (212)
Q Consensus        45 ~~i~~~y~v~~~~~~~~~~~~~i~~~i~dp~g~~v~~~   82 (212)
                      ..+.+.|.+...       ...+.+.|+|.+|++|.+.
T Consensus        12 ~~~~~~~~l~~~-------a~~v~v~I~d~~G~~V~t~   42 (81)
T PF13860_consen   12 TKGSIEYTLPED-------ADNVTVTIYDSNGQVVRTI   42 (81)
T ss_dssp             CEEEEEEEECSS-------CEEEEEEEEETTS-EEEEE
T ss_pred             EEEEEEEeCCCc-------ccEEEEEEEcCCCCEEEEE
Confidence            467777777654       3368999999999999864

>PF11589 DUF3244: Domain of unknown function (DUF3244); InterPro: IPR021638 This family of proteins with unknown function appear to be restricted to Bacteroidetes

Probab=84.09  E-value=5.5  Score=27.86  Aligned_cols=58  Identities=12%  Similarity=0.107  Sum_probs=36.4

Q ss_pred             CcEEEEEEEEEECCCCCCCCCCceEEEEEcCCCCeEecccccc--cceEEEEe--ccccceeeeeEecCCC
Q 028195           44 GDTVHASFVVIKADSSWYSSHDGVDLVVKGPASDQIHDFRDKI--SEKFEFVA--HHKGVHRFCFTNKSPY  110 (212)
Q Consensus        44 ~~~i~~~y~v~~~~~~~~~~~~~i~~~i~dp~g~~v~~~~~~~--~g~~~f~~--~~~G~y~~Cf~n~~~~  110 (212)
                      +..+.+.|...         -.++.+.|.|.+|+++|+..-..  .....+..  ...|.|.+=+.+....
T Consensus        36 ~~~l~I~F~~~---------~~~vtI~I~d~~G~vVy~~~~~~~~~~~~~I~L~~~~~G~Y~l~i~~~~g~   97 (106)
T PF11589_consen   36 GNNLSIEFESP---------IGDVTITIKDSTGNVVYSETVSNSAGQSITIDLNGLPSGEYTLEITNGNGT   97 (106)
T ss_dssp             TTEEEEEESS-----------SEEEEEEEETT--EEEEEEESCGGTTEEEEE-TTS-SEEEEEEEEECTC-
T ss_pred             CCEEEEEEcCC---------CCCEEEEEEeCCCCEEEEEEccCCCCcEEEEEeCCCCCccEEEEEEeCCCC
Confidence            45666666432         34799999999999999864333  22455554  5689999999988763

The protein may have an immunoglobulin-like beta-sandwich fold however this cannot be confirmed. ; PDB: 3D33_B 3SD2_A.

>PF10779 XhlA: Haemolysin XhlA; InterPro: IPR019715 Haemolysin XhlA is a cell-surface associated haemolysin that lyses the two most prevalent types of insect immune cells (granulocytes and plasmatocytes) as well as rabbit and horse erythrocytes []

Probab=81.98  E-value=11  Score=24.30  Aligned_cols=21  Identities=14%  Similarity=0.279  Sum_probs=9.9

Q ss_pred             cchHHHHHHHHHHHHHHHHHH
Q 028195          135 FNPLLEQISKLEEALYNIQFE  155 (212)
Q Consensus       135 ~~~l~~~l~~l~~~l~~i~~~  155 (212)
                      +..++..++.+.+.++.+...
T Consensus         8 l~~ie~~l~~~~~~i~~lE~~   28 (71)
T PF10779_consen    8 LNRIETKLDNHEERIDKLEKR   28 (71)
T ss_pred             HHHHHHHHHHHHHHHHHHHHH
Confidence            344444555554444444433

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	212
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	5e-04

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 39.5 bits (91), Expect = 5e-04
 Identities = 27/192 (14%), Positives = 61/192 (31%), Gaps = 39/192 (20%)

Query: 27  RFVIDREECFSHNVQYEGDTVHASFVVIKADSSWYSSHDGVDLVVKGPASDQIHDFRDKI 86
           + ++ +EE   H +    D V  +  +      W        L+ K    + +  F +++
Sbjct: 43  KSILSKEEI-DHIIM-SKDAVSGTLRLF-----WT-------LLSKQ--EEMVQKFVEEV 86

Query: 87  SEK-FEFVAHHKGVHRFCFTNKSPYHETIDFDVHVGHFSYYDEHAKDEHFNPLLEQISKL 145
               ++F+             + P   T  +        Y D     ++    L+   KL
Sbjct: 87  LRINYKFLMS-----PIKTEQRQPSMMTRMYIEQRDRL-YNDNQVFAKYNVSRLQPYLKL 140

Query: 146 EEALYNIQFEQ----H--------WLEAQTERQAIVNEAMSRRAVYKAFWESTALVGASV 193
            +AL  ++  +             W+         V   M     +K FW +     +  
Sbjct: 141 RQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMD----FKIFWLNLKNCNSPE 196

Query: 194 LQVYLLRRLFER 205
             + +L++L  +
Sbjct: 197 TVLEMLQKLLYQ 208

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	212
1olm_A	403	SEC14-like protein 2; lipid-binding protein, chole	93.58
2p9r_A	102	Alpha-2-M, alpha-2-macroglobulin; human alpha2-mac	92.54
1z65_A	30	PRPLP, prion-like protein doppel, doppelganger; tr	90.43
4dzg_A	114	PLIG; lysozyme inhibitor, G-type lysozyme binding,	90.23
2d7n_A	93	Filamin-C; beta-sandwich, immunoglobulin-like fold	89.51
2ee9_A	95	Filamin-B; beta-sandwich, immunoglobulin-like fold	89.43
2d7p_A	112	Filamin-C; beta-sandwich, immunoglobulin-like fold	87.55
2ee6_A	105	Filamin-B; beta-sandwich, immunoglobulin-like fold	86.98
2d7m_A	115	Filamin-C; beta-sandwich, immunoglobulin-like fold	86.65
3cnk_A	89	Filamin-A; FLNA24, X-RAY crystalography, homodimer	86.53
2dmb_A	124	Filamin-B; beta-sandwich, immunoglobulin-like fold	86.51
3rgh_A	100	Filamin-A; cell adhesion, cytoskeleton-complex, di	85.87
2dj4_A	108	Filamin-B; beta-sandwich, immunoglobulin-like fold	85.82
2eea_A	115	Filamin-B; beta-sandwich, immunoglobulin-like fold	85.27
2dlg_A	102	Filamin-B; beta-sandwich, immunoglobulin-like fold	85.07
2bp3_A	97	Filamin A; structural protein, cytoskeleton/comple	82.71
2e9j_A	119	Filamin-B; beta-sandwich, immunoglobulin-like fold	82.46
2dmc_A	116	Filamin-B; beta-sandwich, immunoglobulin-like fold	81.51
2k9u_A	119	Gamma filamin; cytoskeletal complex, alternative s	80.51
2dic_A	105	Filamin-B; beta-sandwich, immunoglobulin-like fold	80.28

>1olm_A SEC14-like protein 2; lipid-binding protein, cholesterol biosynthesis, oxidized vitamin E, lipid-binding, transport, transcription regulation; HET: VTQ; 1.95A {Homo sapiens} SCOP: a.5.3.1 b.132.1.1 c.13.1.1 PDB: 1o6u_A* 1olm_E*

Probab=93.58  E-value=0.51  Score=39.85  Aligned_cols=82  Identities=12%  Similarity=0.119  Sum_probs=50.2

Q ss_pred             CcceeeeecCCCCcEEEEEEEEEECCCCCCCCCCceEEEEEcC-----C---C--CeEeccccc-c---cceEEEEeccc
Q 028195           32 REECFSHNVQYEGDTVHASFVVIKADSSWYSSHDGVDLVVKGP-----A---S--DQIHDFRDK-I---SEKFEFVAHHK   97 (212)
Q Consensus        32 ~~~Cf~e~~~~~~~~i~~~y~v~~~~~~~~~~~~~i~~~i~dp-----~---g--~~v~~~~~~-~---~g~~~f~~~~~   97 (212)
                      +...+-.++...|..|.=.|.+.+         .+|.|.|+-.     +   |  ..+...... .   -..=++.+++.
T Consensus       288 ~~~~v~~~v~~~g~~l~W~f~~~~---------~DI~F~v~~~~~~~~~~~~~~~~~v~p~~r~~~~~~~~~G~~~~~~~  358 (403)
T 1olm_A          288 SSHQVEYEILFPGCVLRWQFMSDG---------ADVGFGIFLKTKMGERQRAGEMTEVLPNQRYNSHLVPEDGTLTCSDP  358 (403)
T ss_dssp             CEEEEEEEECSTTCEEEEEEEESS---------SCEEEEEEEC----CCCCGGGSEEEEEEEEECTTTSCEEEEEECCSC
T ss_pred             CEEEEEEEEcCCCCEEEEEEEecC---------CcEEEEEEEecccccccCCCcceEEeeeeeecCccccccCEEEcCCC
Confidence            445555555534667777776632         2677777521     1   1  122221111 1   01235789999


Q ss_pred             cceeeeeEecCC--CceEEEEEEEEcc
Q 028195           98 GVHRFCFTNKSP--YHETIDFDVHVGH  122 (212)
Q Consensus        98 G~y~~Cf~n~~~--~~~~V~f~~~~g~  122 (212)
                      |.|.++|+|+.+  ..|.|.+.+++..
T Consensus       359 G~y~l~fdNs~S~~~~k~l~y~v~v~~  385 (403)
T 1olm_A          359 GIYVLRFDNTYSFIHAKKVNFTVEVLL  385 (403)
T ss_dssp             EEEEEEEECTTCCCCSEEEEEEEEEEC
T ss_pred             eEEEEEEeccccceeceEEEEEEEEeC
Confidence            999999999998  4799998888754

>2p9r_A Alpha-2-M, alpha-2-macroglobulin; human alpha2-macroglobulin, Mg2 domain, X-RAY, signaling protein; 2.30A {Homo sapiens}

Probab=92.54  E-value=1.5  Score=29.19  Aligned_cols=65  Identities=17%  Similarity=0.208  Sum_probs=41.6

Q ss_pred             CCcEEEEEEEEEECCCCCCCCCCceEEEEEcCCCCeEeccccc--ccce--EEEEec---cccceeeeeEecC
Q 028195           43 EGDTVHASFVVIKADSSWYSSHDGVDLVVKGPASDQIHDFRDK--ISEK--FEFVAH---HKGVHRFCFTNKS  108 (212)
Q Consensus        43 ~~~~i~~~y~v~~~~~~~~~~~~~i~~~i~dp~g~~v~~~~~~--~~g~--~~f~~~---~~G~y~~Cf~n~~  108 (212)
                      .|+.|.+..-+.+.+.. ......+.+.|.||+|+.+.++...  ..|.  .+|..+   ..|.|++......
T Consensus        15 PGetV~~~~~~~~~~~~-p~~~~~~~v~l~dp~g~~v~~~~~~~~~~G~~~~~f~Lp~~~~~G~y~i~~~~~~   86 (102)
T 2p9r_A           15 PGQTVKFRVVSMDENFH-PLNELIPLVYIQDPKGNRIAQWQSFQLEGGLKQFSFPLSSEPFQGSYKVVVQKKS   86 (102)
T ss_dssp             TTCEEEEEEEEECGGGC-BCCCEEEEEEEECTTSCEEEEEEEEECBTTEEEEEEECCSSCCCEEEEEEEECTT
T ss_pred             CCCEEEEEEEEECCCCc-CCCCCceEEEEECCCCCEEEEEEeecCCCCEEEEEEECCCCCCCeeEEEEEEECC
Confidence            57888877666654321 0123336899999999998874322  3454  355543   4699999998754

>1z65_A PRPLP, prion-like protein doppel, doppelganger; transmembrane helix, DHPC, mouse doppel, unknown function; NMR {Synthetic}

Probab=90.43  E-value=0.091  Score=26.87  Aligned_cols=19  Identities=21%  Similarity=0.359  Sum_probs=15.2

Q ss_pred             hhHHHHHHHHHHHHhhhcc
Q 028195            5 PVGFCIAAILAFIFSPQAV   23 (212)
Q Consensus         5 ~~~~~~~~~~~~~~~~~~~   23 (212)
                      -+|.||+|+++.|++..++
T Consensus         4 hLG~~wlai~c~LLfs~Ls   22 (30)
T 1z65_A            4 RLGTWWVAILCMLLASHLS   22 (30)
T ss_dssp             SCSSHHHHHHHHHHHHHTT
T ss_pred             hhhhhHHHHHHHHHHhhHH
Confidence            4789999999988877654

>4dzg_A PLIG; lysozyme inhibitor, G-type lysozyme binding, hydrolase inhib; HET: MLY; 2.02A {Aeromonas hydrophila subsp}

Probab=90.23  E-value=1.1  Score=31.03  Aligned_cols=66  Identities=9%  Similarity=0.058  Sum_probs=45.5

Q ss_pred             CcceeeeecCCCCcEEEEEEEEEECCCCCCCCCCceEEEEEcCCCCe---EecccccccceEEEEeccccceeeeeEecC
Q 028195           32 REECFSHNVQYEGDTVHASFVVIKADSSWYSSHDGVDLVVKGPASDQ---IHDFRDKISEKFEFVAHHKGVHRFCFTNKS  108 (212)
Q Consensus        32 ~~~Cf~e~~~~~~~~i~~~y~v~~~~~~~~~~~~~i~~~i~dp~g~~---v~~~~~~~~g~~~f~~~~~G~y~~Cf~n~~  108 (212)
                      +...+...+. +|+.+.+..   +.       +..+.+.|.+|+++.   ++.......+.|+-+.|.+|.|++=+....
T Consensus        28 ~~~~Y~~~a~-aGQ~l~V~l---s~-------~~~~~f~I~~P~~~~~~~l~~g~~~~~~~~~g~LP~sG~Y~i~V~~~r   96 (114)
T 4dzg_A           28 DTIHYTLVAX-AGQTMTVXI---GG-------SSNANFNVFAPGAQPGQAEAIGRNDGDGQWQGALPASGXYLIQVYQMR   96 (114)
T ss_dssp             CCEEEECCC--CCCEEEC-C---EE-------STTCEEEEECTTCCTTTSCCSEECCTTSCCEEECSSCC-CEEEEECCH
T ss_pred             CceEEEEEec-CCCEEEEEe---CC-------CCcEEEEEECCCCCcccceeccccCCcceEEEEecCCCcEEEEEEecc
Confidence            3567777888 799888775   22       225778999999874   344333334588899999999999998763

>2d7n_A Filamin-C; beta-sandwich, immunoglobulin-like fold, filamin domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.18.10

Probab=89.51  E-value=0.74  Score=30.67  Aligned_cols=46  Identities=13%  Similarity=0.227  Sum_probs=34.0

Q ss_pred             CCceEEEEEcCCCCeEecc-cccccc--eEEEEeccccceeeeeEecCC
Q 028195           64 HDGVDLVVKGPASDQIHDF-RDKISE--KFEFVAHHKGVHRFCFTNKSP  109 (212)
Q Consensus        64 ~~~i~~~i~dp~g~~v~~~-~~~~~g--~~~f~~~~~G~y~~Cf~n~~~  109 (212)
                      ..++.+.|.+|+|..+.-. .+..+|  ...|++++.|.|.+++.-...
T Consensus        21 ~~~l~v~V~~PsG~~~~~~v~d~~dGtY~v~ytP~e~G~h~v~V~~~g~   69 (93)
T 2d7n_A           21 KGELTGEVRMPSGKTARPNITDNKDGTITVRYAPTEKGLHQMGIKYDGN   69 (93)
T ss_dssp             SSCEEEEEECTTSCEECCEEEECSSSCEEEEECCSSCEEEEEEEEESSS
T ss_pred             CCCEEEEEECCCCCccceEEEECCCCEEEEEEEccCCEEEEEEEEECCE
Confidence            4579999999999865432 223455  568889999999999986654

>2ee9_A Filamin-B; beta-sandwich, immunoglobulin-like fold, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=89.43  E-value=0.62  Score=31.20  Aligned_cols=46  Identities=11%  Similarity=0.153  Sum_probs=34.0

Q ss_pred             CCceEEEEEcCCCCeEecc-cccccc--eEEEEeccccceeeeeEecCC
Q 028195           64 HDGVDLVVKGPASDQIHDF-RDKISE--KFEFVAHHKGVHRFCFTNKSP  109 (212)
Q Consensus        64 ~~~i~~~i~dp~g~~v~~~-~~~~~g--~~~f~~~~~G~y~~Cf~n~~~  109 (212)
                      ..++.+.|.+|+|..+.-. .+..+|  ...|++.+.|.|++++.-...
T Consensus        29 ~~~ltv~V~~PsG~~~~~~v~d~~dGtY~v~ytP~e~G~h~v~V~~~G~   77 (95)
T 2ee9_A           29 KGEITGEVHMPSGKTATPEIVDNKDGTVTVRYAPTEVGLHEMHIKYMGS   77 (95)
T ss_dssp             TTSEEEEEECTTSCEECCEEEECSSSCEEEECCCCSSEEEEEEEEESSC
T ss_pred             CCCEEEEEECCCCCccccEEEeCCCCeEEEEEEecCCEeEEEEEEECCE
Confidence            4589999999999765432 223455  457888999999999986654

>2d7p_A Filamin-C; beta-sandwich, immunoglobulin-like fold, filamin domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.18.10 PDB: 2eeb_A

Probab=87.55  E-value=1.8  Score=29.76  Aligned_cols=56  Identities=23%  Similarity=0.338  Sum_probs=38.1

Q ss_pred             EEEEEEECCCCCCCCCCceEEEEEcCCCCeEecc-cccccc--eEEEEeccccceeeeeEecCC
Q 028195           49 ASFVVIKADSSWYSSHDGVDLVVKGPASDQIHDF-RDKISE--KFEFVAHHKGVHRFCFTNKSP  109 (212)
Q Consensus        49 ~~y~v~~~~~~~~~~~~~i~~~i~dp~g~~v~~~-~~~~~g--~~~f~~~~~G~y~~Cf~n~~~  109 (212)
                      .+|.+...+.     +..+.+.|.+|+|..+.-. ....+|  ...|++++.|.|.+.+.-...
T Consensus        30 ~~F~V~~~~a-----~g~l~v~V~~P~g~~~~~~v~d~~~gty~v~ytP~~~G~h~v~V~~~g~   88 (112)
T 2d7p_A           30 ASFAVQLNGA-----RGVIDARVHTPSGAVEECYVSELDSDKHTIRFIPHENGVHSIDVKFNGA   88 (112)
T ss_dssp             EEEEEECTTC-----CSCEEEEEECSSSCBCCCEECSCBTTEEEEEECCSSCEEEEEEEEESSC
T ss_pred             EEEEEEeCCC-----CCCEEEEEECCCCCeeeeEEEeCCCCeEEEEEEcCCCEeEEEEEEECCe
Confidence            4455555442     3479999999999755432 223355  458889999999999886554

>2ee6_A Filamin-B; beta-sandwich, immunoglobulin-like fold, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=86.98  E-value=2.3  Score=28.64  Aligned_cols=44  Identities=20%  Similarity=0.451  Sum_probs=33.0

Q ss_pred             CCceEEEEEcCCCCeEecccccccc--eEEEEeccccceeeeeEecC
Q 028195           64 HDGVDLVVKGPASDQIHDFRDKISE--KFEFVAHHKGVHRFCFTNKS  108 (212)
Q Consensus        64 ~~~i~~~i~dp~g~~v~~~~~~~~g--~~~f~~~~~G~y~~Cf~n~~  108 (212)
                      ...+.+.|.+|.+..+ +-.+..+|  ..+|+++..|.|.+.+.-..
T Consensus        41 ~~~l~v~v~~p~~~~v-~v~d~~dGty~v~Y~p~~~G~y~I~V~~~g   86 (105)
T 2ee6_A           41 AGGLSIAVEGPSKAEI-TFDDHKNGSCGVSYIAQEPGNYEVSIKFND   86 (105)
T ss_dssp             CCCEEEEEESSSCEEE-EECCCCSSCCCEEEEESSCEEEEEEEEETT
T ss_pred             CCcEEEEEECCCCCEE-EEEECCCCEEEEEEEECCCceEEEEEEECC
Confidence            4578999999998655 32334456  56899999999999998554

>2d7m_A Filamin-C; beta-sandwich, immunoglobulin-like fold, filamin domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.18.10

Probab=86.65  E-value=2.5  Score=28.96  Aligned_cols=56  Identities=11%  Similarity=0.166  Sum_probs=37.5

Q ss_pred             EEEEEECCCCCCCCCCceEEEEEcCCCCeEecc-cccccc--eEEEEeccccceeeeeEecCC
Q 028195           50 SFVVIKADSSWYSSHDGVDLVVKGPASDQIHDF-RDKISE--KFEFVAHHKGVHRFCFTNKSP  109 (212)
Q Consensus        50 ~y~v~~~~~~~~~~~~~i~~~i~dp~g~~v~~~-~~~~~g--~~~f~~~~~G~y~~Cf~n~~~  109 (212)
                      +|.+...+.    ....+.+.|.+|+|..+... .+..+|  ..+|++++.|.|.+.+.-...
T Consensus        33 ~F~V~~~da----G~~~l~V~v~~p~g~~~~~~v~d~~dGty~v~Y~p~~~G~y~i~V~~~g~   91 (115)
T 2d7m_A           33 EFTIDARDA----GEGLLTVQILDPEGKPKKANIRDNGDGTYTVSYLPDMSGRYTITIKYGGD   91 (115)
T ss_dssp             EEEEEESSS----CSSCEEEEEECTTSCBCCEEEEECSSSCEEEEECCCSCEEEEEEEEESSC
T ss_pred             EEEEEECCC----CCCEEEEEEECCCCCeeeeEEEECCCCEEEEEEEeCCCceEEEEEEECCE
Confidence            455555442    24579999999998654322 223455  457888999999999986554

>3cnk_A Filamin-A; FLNA24, X-RAY crystalography, homodimer, acetylation, actin-binding, cytoplasm, cytoskeleton, disease mutation, phosphoprotein; 1.65A {Homo sapiens}

Probab=86.53  E-value=3.4  Score=26.73  Aligned_cols=45  Identities=13%  Similarity=0.101  Sum_probs=31.1

Q ss_pred             CCceEEEEEcCCCCeEec-ccccccce--EEEEeccccceeeeeEecC
Q 028195           64 HDGVDLVVKGPASDQIHD-FRDKISEK--FEFVAHHKGVHRFCFTNKS  108 (212)
Q Consensus        64 ~~~i~~~i~dp~g~~v~~-~~~~~~g~--~~f~~~~~G~y~~Cf~n~~  108 (212)
                      ...+.+.|.+|+|..+.- -.+..+|.  .+|++++.|.|.+.+.-..
T Consensus        29 ~~~l~v~v~~p~g~~~~~~v~d~~dGty~v~Y~p~~~G~y~i~V~~~g   76 (89)
T 3cnk_A           29 NNMLLVGVHGPRTPCEEILVKHVGSRLYSVSYLLKDKGEYTLVVKWGH   76 (89)
T ss_dssp             SCCEEEEEECSSSCCSEEEEEEEETTEEEEEEECCSCEEEEEEEEETT
T ss_pred             CCcEEEEEECCCCCceeEEEEECCCCEEEEEEEECCCccEEEEEEECC
Confidence            457889999999863321 22234564  5788899999999887554

>2dmb_A Filamin-B; beta-sandwich, immunoglobulin-like fold, filamin domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.18.10

Probab=86.51  E-value=2.8  Score=29.24  Aligned_cols=46  Identities=11%  Similarity=0.042  Sum_probs=33.5

Q ss_pred             CCceEEEEEcCCCCeEecc-cccccc--eEEEEeccccceeeeeEecCC
Q 028195           64 HDGVDLVVKGPASDQIHDF-RDKISE--KFEFVAHHKGVHRFCFTNKSP  109 (212)
Q Consensus        64 ~~~i~~~i~dp~g~~v~~~-~~~~~g--~~~f~~~~~G~y~~Cf~n~~~  109 (212)
                      ...+.+.|.+|+|..+.-+ .+..+|  ...|++++.|.|.+++.-...
T Consensus        42 ~~~l~V~I~~p~g~~v~~~v~d~~dGty~V~Y~p~~~G~y~I~V~~~g~   90 (124)
T 2dmb_A           42 KGKVTCTVLTPDGTEAEADVIENEDGTYDIFYTAAKPGTYVIYVRFGGV   90 (124)
T ss_dssp             SCCEEEEEECTTSCBCCCEEEECTTSCEEEEEECSSCEEEEEEEEESSC
T ss_pred             CCcEEEEEECCCCCEEeeEEEeCCCCEEEEEEEcCCCEEEEEEEEECCE
Confidence            5579999999998654332 222456  457889999999999986553

>3rgh_A Filamin-A; cell adhesion, cytoskeleton-complex, disease mutation, immun like, cytoskeleton, actin-binding, cell junction, shape; HET: CME; 2.44A {Homo sapiens} SCOP: b.1.18.0

Probab=85.87  E-value=3.6  Score=27.44  Aligned_cols=45  Identities=7%  Similarity=0.096  Sum_probs=31.1

Q ss_pred             CCceEEEEEcCCCCeEecc-cccccc--eEEEEeccccceeeeeEecC
Q 028195           64 HDGVDLVVKGPASDQIHDF-RDKISE--KFEFVAHHKGVHRFCFTNKS  108 (212)
Q Consensus        64 ~~~i~~~i~dp~g~~v~~~-~~~~~g--~~~f~~~~~G~y~~Cf~n~~  108 (212)
                      ...+.+.|.+|+|..+.-. .+..+|  ..+|+++..|.|.+.+.-..
T Consensus        38 ~~~l~v~i~~~~g~~~~~~v~d~~dGty~V~Y~p~~~G~y~i~V~~~g   85 (100)
T 3rgh_A           38 SAELTIEICSEAGLPAEVYIQDHGDGTHTITYIPLCPGAYTVTIKYGG   85 (100)
T ss_dssp             SCCEEEEEECTTSCBCEEEEEECSSSEEEEEEECCSSEEEEEEEEETT
T ss_pred             CceEEEEEECCCCCEeEEEEEeCCCCEEEEEEEeCCCeeEEEEEEECC
Confidence            4579999999998654322 233455  45788888899988876443

>2dj4_A Filamin-B; beta-sandwich, immunoglobulin-like fold, filamin domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: b.1.18.10

Probab=85.82  E-value=3.2  Score=28.03  Aligned_cols=57  Identities=14%  Similarity=0.109  Sum_probs=37.7

Q ss_pred             EEEEEEECCCCCCCCCCceEEEEEcCCCCeEecc-cccccce--EEEEeccccceeeeeEecCC
Q 028195           49 ASFVVIKADSSWYSSHDGVDLVVKGPASDQIHDF-RDKISEK--FEFVAHHKGVHRFCFTNKSP  109 (212)
Q Consensus        49 ~~y~v~~~~~~~~~~~~~i~~~i~dp~g~~v~~~-~~~~~g~--~~f~~~~~G~y~~Cf~n~~~  109 (212)
                      .+|.+...+.    ....+.+.|.+|+|..+.-. .+..+|.  .+|++++.|.|.+.+.-...
T Consensus        31 ~~F~V~~~~a----G~~~l~V~i~~p~g~~~~~~v~d~~dGty~v~Y~p~~~G~y~i~V~~~g~   90 (108)
T 2dj4_A           31 QSFTVDSSKA----GLAPLEVRVLGPRGLVEPVNVVDNGDGTHTVTYTPSQEGPYMVSVKYADE   90 (108)
T ss_dssp             EEEEEECTTT----CSCCEEEEEECSSSCEECCCCEECSSSEEEEEECCSSCEEEEEEEEESSS
T ss_pred             EEEEEEECCC----CCceEEEEEECCCCCEeeeEEEECCCCEEEEEEEeCCCeeEEEEEEECCE
Confidence            3455544332    35679999999999655332 2334564  57888899999999886553

>2eea_A Filamin-B; beta-sandwich, immunoglobulin-like fold, interaction with GP1BA, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=85.27  E-value=4.9  Score=27.43  Aligned_cols=44  Identities=18%  Similarity=0.369  Sum_probs=32.5

Q ss_pred             CCceEEEEEcCCCCeEecccccccc--eEEEEeccccceeeeeEecC
Q 028195           64 HDGVDLVVKGPASDQIHDFRDKISE--KFEFVAHHKGVHRFCFTNKS  108 (212)
Q Consensus        64 ~~~i~~~i~dp~g~~v~~~~~~~~g--~~~f~~~~~G~y~~Cf~n~~  108 (212)
                      ...+.+.|.+|++..+ +-.+..+|  ..+|++++.|.|.+.+.-..
T Consensus        51 ~~~l~v~v~~p~~~~~-~v~d~~dGty~v~Y~p~~~G~y~I~V~~~g   96 (115)
T 2eea_A           51 EGGLDLAIEGPSKAEI-SCIDNKDGTCTVTYLPTLPGDYSILVKYND   96 (115)
T ss_dssp             SSCEEEEEESSSCCEE-CCBCCSSSEEEEEEECSSCSCEEEEEEESS
T ss_pred             CCceEEEEECCCCceE-EEEECCCCEEEEEEEeCCCeeEEEEEEECC
Confidence            4578999999998544 22334566  46888999999999988544

>2dlg_A Filamin-B; beta-sandwich, immunoglobulin-like fold, filamin domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: b.1.18.10

Probab=85.07  E-value=1.3  Score=29.90  Aligned_cols=46  Identities=15%  Similarity=0.203  Sum_probs=33.7

Q ss_pred             CCceEEEEEcCCCCeEecc-cccccce--EEEEeccccceeeeeEecCC
Q 028195           64 HDGVDLVVKGPASDQIHDF-RDKISEK--FEFVAHHKGVHRFCFTNKSP  109 (212)
Q Consensus        64 ~~~i~~~i~dp~g~~v~~~-~~~~~g~--~~f~~~~~G~y~~Cf~n~~~  109 (212)
                      ...+.+.|.+|+|..+.-. .+..+|.  .+|++++.|.|.+.+.-...
T Consensus        30 ~~~l~v~v~~P~G~~~~~~v~d~~dGty~v~ytP~e~G~h~v~V~~~g~   78 (102)
T 2dlg_A           30 SSDMSAHVTSPSGRVTEAEIVPMGKNSHCVRFVPQEMGVHTVSVKYRGQ   78 (102)
T ss_dssp             GGGCEEEEECTTSCEEECEEEECSSSEEEEEBCCCTTCEEEEEEESSSS
T ss_pred             CCCEEEEEECCCCCEeeeEEEECCCCEEEEEEEecCCEeEEEEEEECCE
Confidence            4579999999999765542 2233554  57889999999999985553

>2bp3_A Filamin A; structural protein, cytoskeleton/complex, actin binding protein, cytoskeleton, complex; 2.32A {Homo sapiens} SCOP: b.1.18.10 PDB: 2aav_A

Probab=82.71  E-value=4.8  Score=26.51  Aligned_cols=44  Identities=16%  Similarity=0.305  Sum_probs=31.0

Q ss_pred             CCceEEEEEcCCCCeEecccccccc--eEEEEeccccceeeeeEecC
Q 028195           64 HDGVDLVVKGPASDQIHDFRDKISE--KFEFVAHHKGVHRFCFTNKS  108 (212)
Q Consensus        64 ~~~i~~~i~dp~g~~v~~~~~~~~g--~~~f~~~~~G~y~~Cf~n~~  108 (212)
                      ...+.+.|.+|.+..+.-. +..+|  ..+|++++.|.|.+.+.-..
T Consensus        36 ~~~l~v~v~~p~~~~~~v~-d~~dGty~v~Y~p~~~G~y~i~V~~~g   81 (97)
T 2bp3_A           36 EGGLSLAIEGPSKAEISCT-DNQDGTCSVSYLPVLPGDYSILVKYNE   81 (97)
T ss_dssp             SEEEEEEEEESSCCEEEEE-ECSSSEEEEEEECSSCEEEEEEEEETT
T ss_pred             CCcEEEEEECCCCCEEEEE-ECCCCEEEEEEEeCCCCcEEEEEEECC
Confidence            4578888999987544322 23456  46788899999999988544

>2e9j_A Filamin-B; beta-sandwich, immunoglobulin-like fold, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=82.46  E-value=2.5  Score=29.19  Aligned_cols=56  Identities=9%  Similarity=0.153  Sum_probs=37.1

Q ss_pred             EEEEEECCCCCCCCCCceEEEEEcCCCCeEecc-cccccc--eEEEEeccccceeeeeEecCC
Q 028195           50 SFVVIKADSSWYSSHDGVDLVVKGPASDQIHDF-RDKISE--KFEFVAHHKGVHRFCFTNKSP  109 (212)
Q Consensus        50 ~y~v~~~~~~~~~~~~~i~~~i~dp~g~~v~~~-~~~~~g--~~~f~~~~~G~y~~Cf~n~~~  109 (212)
                      +|.+...+.    ....+.+.|.+|+|..+.-. .+..+|  ..+|++...|.|.+.+.-...
T Consensus        43 ~F~V~~~da----G~~~l~v~v~~p~g~~~~~~v~d~~dGty~v~Y~p~~~G~y~i~V~~~g~  101 (119)
T 2e9j_A           43 DFAIDARDA----GEGLLAVQITDQEGKPKRAIVHDNKDGTYAVTYIPDKTGRYMIGVTYGGD  101 (119)
T ss_dssp             EEEEEESSC----CCCCEECCEECTTCCCCCEEEEECCSSEEEEEECCCSCSEEEECCEESSC
T ss_pred             EEEEEECCC----CCCeEEEEEECCCCCEEEEEEEECCCCEEEEEEEeCCCEEEEEEEEECCE
Confidence            455555442    25679999999998644322 223456  457888999999999886553

>2dmc_A Filamin-B; beta-sandwich, immunoglobulin-like fold, filamin domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.18.10

Probab=81.51  E-value=0.81  Score=31.75  Aligned_cols=46  Identities=11%  Similarity=0.221  Sum_probs=33.4

Q ss_pred             CCceEEEEEcCCCCeEecc-cccccc--eEEEEeccccceeeeeEecCC
Q 028195           64 HDGVDLVVKGPASDQIHDF-RDKISE--KFEFVAHHKGVHRFCFTNKSP  109 (212)
Q Consensus        64 ~~~i~~~i~dp~g~~v~~~-~~~~~g--~~~f~~~~~G~y~~Cf~n~~~  109 (212)
                      ...+.+.|.+|+|..+--. ....+|  ..+|++.+.|.|.+.+.-...
T Consensus        44 ~~~l~v~v~~PsG~~~~~~v~~~~~g~y~v~ftP~e~G~h~v~V~~~g~   92 (116)
T 2dmc_A           44 LSSLTASIKAPSGRDEPCLLKRLPNNHIGISFIPREVGEHLVSIKKNGN   92 (116)
T ss_dssp             STTBCCEEECTTSCBCCEEEEEETTTEEEEEECCCSCEEEEEECBBSSS
T ss_pred             CCCEEEEEECCCCCEEeeEEEeCCCCeEEEEEEeCCCeeEEEEEEECCE
Confidence            4578999999999754332 222355  458899999999999986553

>2k9u_A Gamma filamin; cytoskeletal complex, alternative splicing, cell adhesion, cell junction, cell shape, cytoplasm, cytoskeleton; NMR {Homo sapiens}

Probab=80.51  E-value=6.9  Score=26.86  Aligned_cols=45  Identities=18%  Similarity=0.344  Sum_probs=32.3

Q ss_pred             CCceEEEEEcCCCCeEecccccccc--eEEEEeccccceeeeeEecCC
Q 028195           64 HDGVDLVVKGPASDQIHDFRDKISE--KFEFVAHHKGVHRFCFTNKSP  109 (212)
Q Consensus        64 ~~~i~~~i~dp~g~~v~~~~~~~~g--~~~f~~~~~G~y~~Cf~n~~~  109 (212)
                      ...+.+.|.+|.+..+.- .+..+|  ..+|+++..|.|.+.+.-...
T Consensus        48 ~~~l~v~v~~p~~~~~~v-~d~~dGty~v~Y~p~~~G~y~I~V~~~g~   94 (119)
T 2k9u_A           48 AGGLSIAVEGPSKAEIAF-EDRKDGSCGVSYVVQEPGDYEVSIKFNDE   94 (119)
T ss_dssp             SEEEEEEEESSSCCEEEE-ECCSSSEEEEEEECCSSEEEEEEEEETSC
T ss_pred             CCcEEEEEeCCCCCeEEE-EECCCCEEEEEEEECCCceEEEEEEECCE
Confidence            557889999998843322 233456  468889999999999985543

>2dic_A Filamin-B; beta-sandwich, immunoglobulin-like fold, filamin domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.18.10

Probab=80.28  E-value=6.5  Score=26.35  Aligned_cols=44  Identities=20%  Similarity=0.323  Sum_probs=31.5

Q ss_pred             CCceEEEEEcCCCCeEecccccccc--eEEEEeccccceeeeeEecC
Q 028195           64 HDGVDLVVKGPASDQIHDFRDKISE--KFEFVAHHKGVHRFCFTNKS  108 (212)
Q Consensus        64 ~~~i~~~i~dp~g~~v~~~~~~~~g--~~~f~~~~~G~y~~Cf~n~~  108 (212)
                      ...+.+.|.+|.+..+.-. +..+|  ..+|++...|.|.+.+.-..
T Consensus        41 ~g~l~v~v~gp~~~~~~v~-d~~dGty~v~Y~p~~~G~y~I~V~~~g   86 (105)
T 2dic_A           41 IGGLGITVEGPSESKINCR-DNKDGSCSAEYIPFAPGDYDVNITYGG   86 (105)
T ss_dssp             SSCEEEEEESSSCCCCEEE-ECSSSCEEEEECCSSCEEEEEEEEETT
T ss_pred             CCceEEEEECCCCCeEEEE-ECCCCeEEEEEEeCCCeEEEEEEEECC
Confidence            4578899999987544322 23456  46888889999999988554

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	212
d1olma2	119	Supernatant protein factor (SPF), C-terminal domai	97.08
d2d7ma1	102	Filamin C {Human (Homo sapiens) [TaxId: 9606]}	92.13
d2nqca1	97	Filamin C {Human (Homo sapiens) [TaxId: 9606]}	89.49
d2dj4a1	101	Filamin b {Human (Homo sapiens) [TaxId: 9606]}	89.38
d2dmba1	111	Filamin b {Human (Homo sapiens) [TaxId: 9606]}	89.34
d2di8a1	98	Filamin b {Human (Homo sapiens) [TaxId: 9606]}	89.03
d2d7na1	80	Filamin C {Human (Homo sapiens) [TaxId: 9606]}	88.61
d2w0pa1	92	Filamin a {Human (Homo sapiens) [TaxId: 9606]}	88.54
d2d7pa1	99	Filamin C {Human (Homo sapiens) [TaxId: 9606]}	87.88
d1v05a_	96	Filamin C {Human (Homo sapiens) [TaxId: 9606]}	87.46
d2bp3a1	92	Filamin a {Human (Homo sapiens) [TaxId: 9606]}	86.91
d2dica1	98	Filamin b {Human (Homo sapiens) [TaxId: 9606]}	85.99
d1qfha2	108	F-actin cross-linking gelation factor (ABP-120) re	85.27
d2diaa1	100	Filamin b {Human (Homo sapiens) [TaxId: 9606]}	85.08
d1nqja_	101	Class 1 collagenase {Bacteria (Clostridium histoly	84.02
d2j3sa2	88	Filamin b {Human (Homo sapiens) [TaxId: 9606]}	83.5
d2di9a1	118	Filamin b {Human (Homo sapiens) [TaxId: 9606]}	81.91
d2dmca1	103	Filamin b {Human (Homo sapiens) [TaxId: 9606]}	81.0

>d1olma2 b.132.1.1 (A:275-393) Supernatant protein factor (SPF), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Supernatant protein factor (SPF), C-terminal domain
superfamily: Supernatant protein factor (SPF), C-terminal domain
family: Supernatant protein factor (SPF), C-terminal domain
domain: Supernatant protein factor (SPF), C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.08  E-value=0.0035  Score=42.56  Aligned_cols=32  Identities=19%  Similarity=0.295  Sum_probs=28.3

Q ss_pred             EEEeccccceeeeeEecCC--CceEEEEEEEEcc
Q 028195           91 EFVAHHKGVHRFCFTNKSP--YHETIDFDVHVGH  122 (212)
Q Consensus        91 ~f~~~~~G~y~~Cf~n~~~--~~~~V~f~~~~g~  122 (212)
                      +|.++..|.|.+||+|+.+  ..|.|.+.+++-.
T Consensus        78 ~~~~~~~G~Y~l~FDNs~S~~~sK~l~Y~i~v~~  111 (119)
T d1olma2          78 TLTCSDPGIYVLRFDNTYSFIHAKKVNFTVEVLL  111 (119)
T ss_dssp             EEECCSCEEEEEEEECTTCCCCSEEEEEEEEEEC
T ss_pred             EEEcCCCEEEEEEEeCCcceEEeeEEEEEEEEEC
Confidence            5788999999999999998  5899999998844

>d2d7ma1 b.1.18.10 (A:8-109) Filamin C {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: E set domains
family: Filamin repeat (rod domain)
domain: Filamin C
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.13  E-value=0.26  Score=31.70  Aligned_cols=46  Identities=9%  Similarity=0.117  Sum_probs=33.7

Q ss_pred             CCceEEEEEcCCCCeEecc-cccccc--eEEEEeccccceeeeeEecCC
Q 028195           64 HDGVDLVVKGPASDQIHDF-RDKISE--KFEFVAHHKGVHRFCFTNKSP  109 (212)
Q Consensus        64 ~~~i~~~i~dp~g~~v~~~-~~~~~g--~~~f~~~~~G~y~~Cf~n~~~  109 (212)
                      ...+.+.|.+|+|+.+.-. ....+|  ..+|++++.|.|.+.+.-...
T Consensus        36 ~g~l~v~i~~p~g~~~~~~v~~~~dg~y~v~y~P~~~G~h~i~V~~~g~   84 (102)
T d2d7ma1          36 EGLLTVQILDPEGKPKKANIRDNGDGTYTVSYLPDMSGRYTITIKYGGD   84 (102)
T ss_dssp             SSCEEEEEECTTSCBCCEEEEECSSSCEEEEECCCSCEEEEEEEEESSC
T ss_pred             CCcEEEEEEeCCCCEeeeEEEeCCCcEEEEEEEECCCEeEEEEEEECCE
Confidence            4579999999998765432 222346  458999999999999976553

>d2nqca1 b.1.18.10 (A:2482-2578) Filamin C {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: E set domains
family: Filamin repeat (rod domain)
domain: Filamin C
species: Human (Homo sapiens) [TaxId: 9606]

Probab=89.49  E-value=0.8  Score=28.87  Aligned_cols=43  Identities=9%  Similarity=0.134  Sum_probs=32.0

Q ss_pred             CCceEEEEEcCCCCeEecccccccceEEEEeccccceeeeeEe
Q 028195           64 HDGVDLVVKGPASDQIHDFRDKISEKFEFVAHHKGVHRFCFTN  106 (212)
Q Consensus        64 ~~~i~~~i~dp~g~~v~~~~~~~~g~~~f~~~~~G~y~~Cf~n  106 (212)
                      ...+.+.|.+|++..+.-..+...-..+|++.+.|.|.+.+.-
T Consensus        34 ~~~l~v~v~~p~~~~~~~~~~~~~y~v~y~P~~~G~h~i~V~~   76 (97)
T d2nqca1          34 SGALSVTIDGPSKVQLDCRECPEGHVVTYTPMAPGNYLIAIKY   76 (97)
T ss_dssp             SCCEEEEEESSSCCEEEEEEETTEEEEEEECCSCEEEEEEEEE
T ss_pred             CCceEEEEEcCCCceEEEEECCCcEEEEEEeCCCEeEEEEEEE
Confidence            4578999999998766544332222578999999999999863

>d2dj4a1 b.1.18.10 (A:8-108) Filamin b {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: E set domains
family: Filamin repeat (rod domain)
domain: Filamin b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=89.38  E-value=0.72  Score=29.32  Aligned_cols=45  Identities=11%  Similarity=0.054  Sum_probs=33.2

Q ss_pred             CCceEEEEEcCCCCeEecc-cccccce--EEEEeccccceeeeeEecC
Q 028195           64 HDGVDLVVKGPASDQIHDF-RDKISEK--FEFVAHHKGVHRFCFTNKS  108 (212)
Q Consensus        64 ~~~i~~~i~dp~g~~v~~~-~~~~~g~--~~f~~~~~G~y~~Cf~n~~  108 (212)
                      ...+.+.|.+|+|..+.-. ....+|.  ..|++.+.|.|++-+.-..
T Consensus        35 ~g~l~v~i~~p~g~~~~~~v~~~~dG~y~v~y~P~~~G~y~i~V~~~g   82 (101)
T d2dj4a1          35 LAPLEVRVLGPRGLVEPVNVVDNGDGTHTVTYTPSQEGPYMVSVKYAD   82 (101)
T ss_dssp             SCCEEEEEECSSSCEECCCCEECSSSEEEEEECCSSCEEEEEEEEESS
T ss_pred             CCCEEEEEEECCCCEeEEEEEeCCCCEEEEEEEeCCCeeEEEEEEECC
Confidence            5579999999999876532 2334564  5888999999999886544

>d2dmba1 b.1.18.10 (A:8-118) Filamin b {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: E set domains
family: Filamin repeat (rod domain)
domain: Filamin b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=89.34  E-value=0.46  Score=30.95  Aligned_cols=46  Identities=11%  Similarity=0.042  Sum_probs=34.6

Q ss_pred             CCceEEEEEcCCCCeEecc-cccccc--eEEEEeccccceeeeeEecCC
Q 028195           64 HDGVDLVVKGPASDQIHDF-RDKISE--KFEFVAHHKGVHRFCFTNKSP  109 (212)
Q Consensus        64 ~~~i~~~i~dp~g~~v~~~-~~~~~g--~~~f~~~~~G~y~~Cf~n~~~  109 (212)
                      ...+.+.|.+|+|+.+.-. .+..+|  ..+|++.+.|.|++.+.-...
T Consensus        35 ~g~l~v~v~~p~g~~~~~~v~d~~~G~y~v~f~P~~~G~h~i~V~~~g~   83 (111)
T d2dmba1          35 KGKVTCTVLTPDGTEAEADVIENEDGTYDIFYTAAKPGTYVIYVRFGGV   83 (111)
T ss_dssp             SCCEEEEEECTTSCBCCCEEEECTTSCEEEEEECSSCEEEEEEEEESSC
T ss_pred             CCcEEEEEEECCCCEEEeEEEECCCCEEEEEEEECCCCCEEEEEEECCE
Confidence            5579999999998766432 223456  468899999999999986654

>d2di8a1 b.1.18.10 (A:8-105) Filamin b {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: E set domains
family: Filamin repeat (rod domain)
domain: Filamin b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=89.03  E-value=0.84  Score=28.86  Aligned_cols=45  Identities=18%  Similarity=0.217  Sum_probs=32.9

Q ss_pred             CCceEEEEEcCCCCeEecccccccce--EEEEeccccceeeeeEecCC
Q 028195           64 HDGVDLVVKGPASDQIHDFRDKISEK--FEFVAHHKGVHRFCFTNKSP  109 (212)
Q Consensus        64 ~~~i~~~i~dp~g~~v~~~~~~~~g~--~~f~~~~~G~y~~Cf~n~~~  109 (212)
                      ..++.+.|.+|++..+.-.. ..+|.  .+|++.+.|.|.+.+.-...
T Consensus        34 ~g~l~v~i~gp~~~~v~v~~-~~dg~y~v~y~P~~~G~y~i~V~~~g~   80 (98)
T d2di8a1          34 YGGISLAVEGPSKVDIQTED-LEDGTCKVSYFPTVPGVYIVSTKFADE   80 (98)
T ss_dssp             BCCEEEEEESSSCCCEECCB-CTTSCEEEEECCCSCSEEEEEEEESSC
T ss_pred             CCceEEEEEeCCCceEEEEE-CCCCEEEEEEEECCCceEEEEEEECCE
Confidence            45799999999887654332 33564  57899999999999875543

>d2d7na1 b.1.18.10 (A:8-87) Filamin C {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: E set domains
family: Filamin repeat (rod domain)
domain: Filamin C
species: Human (Homo sapiens) [TaxId: 9606]

Probab=88.61  E-value=0.53  Score=28.78  Aligned_cols=46  Identities=13%  Similarity=0.211  Sum_probs=34.0

Q ss_pred             CCceEEEEEcCCCCeEeccc-ccccc--eEEEEeccccceeeeeEecCC
Q 028195           64 HDGVDLVVKGPASDQIHDFR-DKISE--KFEFVAHHKGVHRFCFTNKSP  109 (212)
Q Consensus        64 ~~~i~~~i~dp~g~~v~~~~-~~~~g--~~~f~~~~~G~y~~Cf~n~~~  109 (212)
                      ..++.+.|.+|+|..+...- ...+|  ..+|++.+.|.|.+=+.....
T Consensus        14 ~g~l~~~v~~P~G~~~~~~v~~~~dg~y~v~y~P~~~G~h~v~V~~~g~   62 (80)
T d2d7na1          14 KGELTGEVRMPSGKTARPNITDNKDGTITVRYAPTEKGLHQMGIKYDGN   62 (80)
T ss_dssp             SSCEEEEEECTTSCEECCEEEECSSSCEEEEECCSSCEEEEEEEEESSS
T ss_pred             CCcEEEEEECCCCCEeceEEEECCCCEEEEEEEECCcEEEEEEEEECCE
Confidence            56899999999998754321 23355  468889999999988776654

>d2w0pa1 b.1.18.10 (A:2237-2328) Filamin a {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: E set domains
family: Filamin repeat (rod domain)
domain: Filamin a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=88.54  E-value=0.86  Score=28.49  Aligned_cols=44  Identities=16%  Similarity=0.283  Sum_probs=32.7

Q ss_pred             CCceEEEEEcCCCCeEecccccccce--EEEEeccccceeeeeEecC
Q 028195           64 HDGVDLVVKGPASDQIHDFRDKISEK--FEFVAHHKGVHRFCFTNKS  108 (212)
Q Consensus        64 ~~~i~~~i~dp~g~~v~~~~~~~~g~--~~f~~~~~G~y~~Cf~n~~  108 (212)
                      ...+.+.|.+|++..+.-.+ ..+|.  .+|++.+.|.|.+.+.-..
T Consensus        32 ~g~l~v~v~gp~~~~v~v~d-~~dg~y~v~ytP~~~G~y~i~V~~~g   77 (92)
T d2w0pa1          32 AGGLAIAVEGPSKAEISFED-RKDGSCGVAYVVQEPGDYEVSVKFNE   77 (92)
T ss_dssp             SCCEEEEEEESSCCEEEEEE-CTTSCEEEEEECSSCEEEEEEEEETT
T ss_pred             CCceEEEEEeCCceEEEEEE-CCCCEEEEEEEECCCceEEEEEEECC
Confidence            45789999999986654332 34564  5899999999999887554

>d2d7pa1 b.1.18.10 (A:8-106) Filamin C {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: E set domains
family: Filamin repeat (rod domain)
domain: Filamin C
species: Human (Homo sapiens) [TaxId: 9606]

Probab=87.88  E-value=0.81  Score=29.01  Aligned_cols=46  Identities=22%  Similarity=0.334  Sum_probs=33.8

Q ss_pred             CCceEEEEEcCCCCeEeccc-ccccce--EEEEeccccceeeeeEecCC
Q 028195           64 HDGVDLVVKGPASDQIHDFR-DKISEK--FEFVAHHKGVHRFCFTNKSP  109 (212)
Q Consensus        64 ~~~i~~~i~dp~g~~v~~~~-~~~~g~--~~f~~~~~G~y~~Cf~n~~~  109 (212)
                      ...+.+.|.+|+|..+--.. ...+|.  .+|++.+.|.|.+.+.-...
T Consensus        33 ~g~l~v~v~~p~g~~v~~~v~~~~dg~y~v~y~P~~~G~~~i~V~~~g~   81 (99)
T d2d7pa1          33 RGVIDARVHTPSGAVEECYVSELDSDKHTIRFIPHENGVHSIDVKFNGA   81 (99)
T ss_dssp             CSCEEEEEECSSSCBCCCEECSCBTTEEEEEECCSSCEEEEEEEEESSC
T ss_pred             CCeEEEEEEcCCCCEeeeEEEeCCCCEEEEEEEECCCCcEEEEEEECCE
Confidence            45799999999987654322 234564  57899999999999886654

>d1v05a_ b.1.18.10 (A:) Filamin C {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: E set domains
family: Filamin repeat (rod domain)
domain: Filamin C
species: Human (Homo sapiens) [TaxId: 9606]

Probab=87.46  E-value=1  Score=28.17  Aligned_cols=45  Identities=11%  Similarity=0.087  Sum_probs=32.9

Q ss_pred             CCceEEEEEcCCCCeEe-cccccccc--eEEEEeccccceeeeeEecC
Q 028195           64 HDGVDLVVKGPASDQIH-DFRDKISE--KFEFVAHHKGVHRFCFTNKS  108 (212)
Q Consensus        64 ~~~i~~~i~dp~g~~v~-~~~~~~~g--~~~f~~~~~G~y~~Cf~n~~  108 (212)
                      ...+.+.|.+|+|..+- .-.+..+|  ...|++.+.|.|++.+.-..
T Consensus        36 ~g~l~v~v~~p~g~~v~~~v~~~~~g~y~v~y~P~~~G~~~v~V~~~g   83 (96)
T d1v05a_          36 TNMMMVGVHGPKTPCEEVYVKHMGNRVYNVTYTVKEKGDYILIVKWGD   83 (96)
T ss_dssp             SCCEEEEEECSSSCCSEEEEEECSTTEEEEEEECSSCEEEEEEEEETT
T ss_pred             CCceEEEEEECCCCeeeeEEEECCCCEEEEEEEeCCCccEEEEEEECC
Confidence            44799999999986543 22233455  45889999999999987554

>d2bp3a1 b.1.18.10 (A:1863-1954) Filamin a {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: E set domains
family: Filamin repeat (rod domain)
domain: Filamin a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=86.91  E-value=1.2  Score=27.79  Aligned_cols=44  Identities=14%  Similarity=0.260  Sum_probs=32.2

Q ss_pred             CCceEEEEEcCCCCeEecccccccceE--EEEeccccceeeeeEecC
Q 028195           64 HDGVDLVVKGPASDQIHDFRDKISEKF--EFVAHHKGVHRFCFTNKS  108 (212)
Q Consensus        64 ~~~i~~~i~dp~g~~v~~~~~~~~g~~--~f~~~~~G~y~~Cf~n~~  108 (212)
                      ...+.+.|.+|++..+.-.. ..+|.|  +|++.+.|.|.+-+.-..
T Consensus        33 ~g~l~v~v~~p~~~~~~v~~-~~dg~y~v~ytP~~~G~h~i~V~~~g   78 (92)
T d2bp3a1          33 EGGLSLAIEGPSKAEISCTD-NQDGTCSVSYLPVLPGDYSILVKYNE   78 (92)
T ss_dssp             SEEEEEEEEESSCCEEEEEE-CSSSEEEEEEECSSCEEEEEEEEETT
T ss_pred             CCceEEEEEeCCCceEEEEE-CCCCEEEEEEEECCCccEEEEEEECC
Confidence            45788999999987665433 345654  799999999999776443

>d2dica1 b.1.18.10 (A:8-105) Filamin b {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: E set domains
family: Filamin repeat (rod domain)
domain: Filamin b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=85.99  E-value=1.3  Score=27.75  Aligned_cols=44  Identities=18%  Similarity=0.286  Sum_probs=32.1

Q ss_pred             CCceEEEEEcCCCCeEecccccccce--EEEEeccccceeeeeEecC
Q 028195           64 HDGVDLVVKGPASDQIHDFRDKISEK--FEFVAHHKGVHRFCFTNKS  108 (212)
Q Consensus        64 ~~~i~~~i~dp~g~~v~~~~~~~~g~--~~f~~~~~G~y~~Cf~n~~  108 (212)
                      ...+.+.|.+|++..+.-.. ..+|.  .+|++.+.|.|.+.+.-..
T Consensus        34 ~g~l~v~v~~p~~~~~~v~~-~~dg~y~v~y~P~~~G~y~i~V~~~g   79 (98)
T d2dica1          34 IGGLGITVEGPSESKINCRD-NKDGSCSAEYIPFAPGDYDVNITYGG   79 (98)
T ss_dssp             SSCEEEEEESSSCCCCEEEE-CSSSCEEEEECCSSCEEEEEEEEETT
T ss_pred             CCCcEEEEEeCCCcEEEEEE-CCCCEEEEEEEECCCceEEEEEEECC
Confidence            45789999999886553222 24554  5789999999999987654

>d1qfha2 b.1.18.10 (A:750-857) F-actin cross-linking gelation factor (ABP-120) repeats {Dictyostelium discoideum [TaxId: 44689]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: E set domains
family: Filamin repeat (rod domain)
domain: F-actin cross-linking gelation factor (ABP-120) repeats
species: Dictyostelium discoideum [TaxId: 44689]

Probab=85.27  E-value=2.4  Score=27.13  Aligned_cols=45  Identities=16%  Similarity=0.180  Sum_probs=32.5

Q ss_pred             CCceEEEEEcCCCCeEecccccccce--EEEEeccccceeeeeEecC
Q 028195           64 HDGVDLVVKGPASDQIHDFRDKISEK--FEFVAHHKGVHRFCFTNKS  108 (212)
Q Consensus        64 ~~~i~~~i~dp~g~~v~~~~~~~~g~--~~f~~~~~G~y~~Cf~n~~  108 (212)
                      ...+.+.|.+|.+++-..-.+..+|.  ..|++...|.|.+.+.-..
T Consensus        30 ~~~~~v~i~gp~~~~~~~v~d~~dGty~v~y~p~~~G~y~v~V~~~g   76 (108)
T d1qfha2          30 GDKFEVSITGPAEEITLDAIDNQDGTYTAAYSLVGNGRFSTGVKLNG   76 (108)
T ss_dssp             CCCEEEEEEECCSEEEEEEEECSSSEEEEEEEEESSEEEEEEEEETT
T ss_pred             CCeEEEEEECCCcccccEEEECCCCEEEEEEEECcceeEEEEEEECC
Confidence            45788999999886443333344664  5788999999999888554

>d2diaa1 b.1.18.10 (A:8-107) Filamin b {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: E set domains
family: Filamin repeat (rod domain)
domain: Filamin b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=85.08  E-value=1.2  Score=28.13  Aligned_cols=45  Identities=7%  Similarity=0.129  Sum_probs=33.2

Q ss_pred             CCceEEEEEcCCCCeEec-ccccccc--eEEEEeccccceeeeeEecC
Q 028195           64 HDGVDLVVKGPASDQIHD-FRDKISE--KFEFVAHHKGVHRFCFTNKS  108 (212)
Q Consensus        64 ~~~i~~~i~dp~g~~v~~-~~~~~~g--~~~f~~~~~G~y~~Cf~n~~  108 (212)
                      ...+.+.|.+|+|+.+.- -....+|  ..+|++.+.|.|++.+.-..
T Consensus        34 ~~~l~v~i~~~~g~~~~~~v~~~~dg~y~v~y~P~~~G~h~i~V~~~g   81 (100)
T d2diaa1          34 PGALGLEAVSDSGTKAEVSIQNNKDGTYAVTYVPLTAGMYTLTMKYGG   81 (100)
T ss_dssp             SCCEEEEEEETTTEECEEEEEECTTSEEEEEEECSSCEEEEEEEEETT
T ss_pred             CCcEEEEEEeCCCCEeeEEEEECCCCEEEEEEEeCcCccEEEEEEECC
Confidence            457999999999875532 2233455  56889999999999998654

>d1nqja_ b.23.2.1 (A:) Class 1 collagenase {Bacteria (Clostridium histolyticum) [TaxId: 1498]}

class: All beta proteins
fold: CUB-like
superfamily: Collagen-binding domain
family: Collagen-binding domain
domain: Class 1 collagenase
species: Bacteria (Clostridium histolyticum) [TaxId: 1498]

Probab=84.02  E-value=1.4  Score=27.64  Aligned_cols=67  Identities=13%  Similarity=0.073  Sum_probs=40.9

Q ss_pred             CcceeeeecCCCCcEEEEEEEEEECCCCCCCCCCceEEEEEcCCCCeEecccccccc--eEEEEeccccceeeeeEec
Q 028195           32 REECFSHNVQYEGDTVHASFVVIKADSSWYSSHDGVDLVVKGPASDQIHDFRDKISE--KFEFVAHHKGVHRFCFTNK  107 (212)
Q Consensus        32 ~~~Cf~e~~~~~~~~i~~~y~v~~~~~~~~~~~~~i~~~i~dp~g~~v~~~~~~~~g--~~~f~~~~~G~y~~Cf~n~  107 (212)
                      ...-|..+++ ++..+.++..-  ..      ..++++.++|++|..+........+  ........+|+|-+=+...
T Consensus        21 d~D~y~f~l~-~~~~v~i~l~~--~~------~~d~~l~lyd~~g~~~~~~~~~~~~~~~~~~~~~~~GtYyi~V~~~   89 (101)
T d1nqja_          21 SRDYYSFEVK-EEGEVNIELDK--KD------EFGVTWTLHPESNINDRITYGQVDGNKVSNKVKLRPGKYYLLVYKY   89 (101)
T ss_dssp             CEEEEEEEES-SCEEEEEEEEE--SS------SSEEEEEEEECC----CCEECEEETTEEEEEEEECSEEEEEEEEEE
T ss_pred             cceEEEEECC-CCCEEEEEEeC--Cc------cCCeEEEEEcCCCCEEEEecCCCCCceEEEEEecCCeEEEEEEEec
Confidence            3567777888 67887776543  21      3368999999999887665433333  2334445688888877653

>d2j3sa2 b.1.18.10 (A:2149-2236) Filamin b {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: E set domains
family: Filamin repeat (rod domain)
domain: Filamin b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=83.50  E-value=0.35  Score=30.18  Aligned_cols=45  Identities=16%  Similarity=0.212  Sum_probs=30.6

Q ss_pred             CCceEEEEEcCCCCeEeccc-ccccce--EEEEeccccceeeeeEecC
Q 028195           64 HDGVDLVVKGPASDQIHDFR-DKISEK--FEFVAHHKGVHRFCFTNKS  108 (212)
Q Consensus        64 ~~~i~~~i~dp~g~~v~~~~-~~~~g~--~~f~~~~~G~y~~Cf~n~~  108 (212)
                      ..++.+.|.+|+|+.+.-.- ...+|.  ..|++.+.|.|.+-+.-..
T Consensus        23 ~g~l~v~v~~P~g~~~~~~v~~~~~g~y~v~y~P~~~G~h~i~V~~~g   70 (88)
T d2j3sa2          23 IQDMTAQVTSPSGKTHEAEIVEGENHTYCIRFVPAEMGTHTVSVKYKG   70 (88)
T ss_dssp             CCCEEEEEECTTCCEEEEBC-------CCCBCCCCSCEEEEEEEEETT
T ss_pred             CCcEEEEEECCCCCEEeeEEEECCCCEEEEEEEECCceeEEEEEEECC
Confidence            34799999999998775432 223454  4788999999998887554

>d2di9a1 b.1.18.10 (A:8-125) Filamin b {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: E set domains
family: Filamin repeat (rod domain)
domain: Filamin b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=81.91  E-value=2.5  Score=27.28  Aligned_cols=45  Identities=18%  Similarity=0.248  Sum_probs=33.7

Q ss_pred             CCceEEEEEcCCCCeEecccccccc--eEEEEeccccceeeeeEecCC
Q 028195           64 HDGVDLVVKGPASDQIHDFRDKISE--KFEFVAHHKGVHRFCFTNKSP  109 (212)
Q Consensus        64 ~~~i~~~i~dp~g~~v~~~~~~~~g--~~~f~~~~~G~y~~Cf~n~~~  109 (212)
                      ...+.+.|.+|++..+.-. ...+|  ..+|++.+.|.|++.+.-...
T Consensus        54 ~g~l~v~i~~p~~~~~~v~-~~~dG~y~v~ytP~~~G~y~i~V~~~g~  100 (118)
T d2di9a1          54 TGGLGLTVEGPCEAKIECS-DNGDGTCSVSYLPTKPGEYFVNILFEEV  100 (118)
T ss_dssp             SSCEEEEECSSSCCEEEEE-ECSSSEEEEEEECSSSSEEEEEEEESSC
T ss_pred             CCccEEEEecCCceEEEEE-ECCCCEEEEEEEeCCcEeEEEEEEECCE
Confidence            4578999999998765433 23456  458899999999999986654

>d2dmca1 b.1.18.10 (A:8-110) Filamin b {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: E set domains
family: Filamin repeat (rod domain)
domain: Filamin b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=81.00  E-value=0.65  Score=29.59  Aligned_cols=43  Identities=12%  Similarity=0.247  Sum_probs=30.4

Q ss_pred             CCceEEEEEcCCCCeEecc-cccccce--EEEEeccccceeeeeEe
Q 028195           64 HDGVDLVVKGPASDQIHDF-RDKISEK--FEFVAHHKGVHRFCFTN  106 (212)
Q Consensus        64 ~~~i~~~i~dp~g~~v~~~-~~~~~g~--~~f~~~~~G~y~~Cf~n  106 (212)
                      ..++.+.|.+|+|..+--. ....+|.  .+|++.+.|.|.+=+.-
T Consensus        37 ~g~l~v~v~~P~g~~v~~~v~~~~dg~y~v~f~P~~~G~h~i~V~~   82 (103)
T d2dmca1          37 LSSLTASIKAPSGRDEPCLLKRLPNNHIGISFIPREVGEHLVSIKK   82 (103)
T ss_dssp             STTBCCEEECTTSCBCCEEEEEETTTEEEEEECCCSCEEEEEECBB
T ss_pred             CCcEEEEEECCCCCEeccEEEECCCCEEEEEEEeCCceeEEEEEEE
Confidence            4579999999999765422 2234554  57899999999875543