Citrus Sinensis ID: 028219


Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210--
MIGRKNLGVSSFLLVLLALGFFFATYNLLTMVIQNKAADEIGKLNPLTQMPEKTGGGNSGMRFHVALTATDAIYSQWQSRIMYYWYKKVKDMPRSDMGKFTRILHSGKADNLMDEIPSFVVDPLPEGLDRYLLEEISPTWLNVSLRMKDDHETDKQFGWVLEMYAYAVASALHGVRHILRKDFMLQPPWDPEVGKRFILHYTYGCDYNLKVK
cccccccccHHHHHHHHHHHHHHHHHHHEEEEEccccccccccccccccccccccccccccEEEEEEcccccccccHHHHHHHHHHHHHHcccccccccEEEEEccccccccccccccccccccccccccHHHHcccHHHHHHHHHHcccccccccccccHHHHHHHHHHHHccccccccccccccccccccccccEEEEEEcccccccccc
ccccccccccHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccEEcccccccccccccEEEEEEccccHHHHHHHHHHHHHHHHHHccccccccccHEEHccccccHHHHcccEEEEccccccccHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHcccccccccccEccccccHcccccEEEEEEcccccccccc
migrknlgVSSFLLVLLALGFFFATYNLLTMVIQNKAadeigklnpltqmpektgggnsgmRFHVALTATDAIYSQWQSRIMYYWYKkvkdmprsdmgkftrilhsgkadnlmdeipsfvvdplpegldrYLLEEISPTWLNVSLrmkddhetdkQFGWVLEMYAYAVASALHGVRHILRkdfmlqppwdpevgkRFILHYTygcdynlkvk
MIGRKNLGVSSFLLVLLALGFFFATYNLLTMVIQNKAADEIGKLNPLTQMPEKTGGGNSGMRFHVALTATDAIYSQWQSRIMYYWYKKVKDMPRSDMGKFTRILHSgkadnlmdeIPSFVVDPLPEGLDRYLLEEISPTWLNVSLRMKDDHETDKQFGWVLEMYAYAVASALHGVRHILRKDFMLQPPWDPEVGKRFILHYTYGcdynlkvk
MIGRKNlgvssfllvllalgfffaTYNLLTMVIQNKAADEIGKLNPLTQMPEKTGGGNSGMRFHVALTATDAIYSQWQSRIMYYWYKKVKDMPRSDMGKFTRILHSGKADNLMDEIPSFVVDPLPEGLDRYLLEEISPTWLNVSLRMKDDHETDKQFGWVLEMYAYAVASALHGVRHILRKDFMLQPPWDPEVGKRFILHYTYGCDYNLKVK
******LGVSSFLLVLLALGFFFATYNLLTMVIQNKAADEIGKL***************GMRFHVALTATDAIYSQWQSRIMYYWYKKVKDMPRSDMGKFTRILHSGKADNLMDEIPSFVVDPLPEGLDRYLLEEISPTWLNVSLRMKDDHETDKQFGWVLEMYAYAVASALHGVRHILRKDFMLQPPWDPEVGKRFILHYTYGCDYNL***
*********S**LLVLLALGFFFATYNLLTM********************************HVALTATDAIYSQWQSRIMYYWYKKV********GKFTRILHSGKADNLMDEIPSFVVDPLPEGLDRYLLEEISPTWLNVSLRMKDDHETDKQFGWVLEMYAYAVASALHGVRHILRKDFMLQPPWDPEVGKRFILHYTYGCDYNLK**
MIGRKNLGVSSFLLVLLALGFFFATYNLLTMVIQNKAADEIGKLNPLTQMPEKTGGGNSGMRFHVALTATDAIYSQWQSRIMYYWYKKVKDMPRSDMGKFTRILHSGKADNLMDEIPSFVVDPLPEGLDRYLLEEISPTWLNVSLRMKDDHETDKQFGWVLEMYAYAVASALHGVRHILRKDFMLQPPWDPEVGKRFILHYTYGCDYNLKVK
******LGVSSFLLVLLALGFFFATYNLLTMVIQNKAADEIGKLNPLTQMPEKTGGGNSGMRFHVALTATDAIYSQWQSRIMYYWYKKVKDMPRSDMGKFTRILHSGKADNLMDEIPSFVVDPLPEGLDRYLLEEISPTWLNVSLRMKDDHETDKQFGWVLEMYAYAVASALHGVRHILRKDFMLQPPWDPEVGKRFILHYTYGCDYN****
iiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
iiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
iiiiiiHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
SSSSSSSSSSSSSSSSiiHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
SSSSSSSSSSSSSSSSSSSSSSSSoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
SSSSSSSSSSSSSSSSSSSSSSSSSooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MIGRKNLGVSSFLLVLLALGFFFATYNLLTMVIQNKAADEIGKLNPLTQMPEKTGGGNSGMRFHVALTATDAIYSQWQSRIMYYWYKKVKDMPRSDMGKFTRILHSGKADNLMDEIPSFVVDPLPEGLDRYLLEEISPTWLNVSLRMKDDHETDKQFGWVLEMYAYAVASALHGVRHILRKDFMLQPPWDPEVGKRFILHYTYGCDYNLKVK
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

No hits with e-value below 0.001 by BLAST

Close Homologs in the Non-Redundant Database Detected by BLAST ?

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query212
449458131309 PREDICTED: uncharacterized protein LOC10 0.990 0.679 0.577 1e-75
4567251303 unknown protein [Arabidopsis thaliana] 0.754 0.528 0.541 1e-54
255570157240 conserved hypothetical protein [Ricinus 0.424 0.375 0.849 2e-38
449515905 367 PREDICTED: uncharacterized LOC101220530 0.613 0.354 0.604 3e-38
224103959 360 predicted protein [Populus trichocarpa] 0.443 0.261 0.804 8e-38
225465845 362 PREDICTED: uncharacterized protein LOC10 0.575 0.337 0.610 2e-37
147844794 416 hypothetical protein VITISV_011144 [Viti 0.575 0.293 0.610 3e-37
296083855 359 unnamed protein product [Vitis vinifera] 0.608 0.359 0.674 4e-37
323370570 357 root determined nodulation 1 [Medicago t 0.589 0.350 0.603 4e-37
356577618 368 PREDICTED: uncharacterized protein LOC10 0.613 0.353 0.605 4e-37
>gi|449458131|ref|XP_004146801.1| PREDICTED: uncharacterized protein LOC101220530 [Cucumis sativus] Back     alignment and taxonomy information
 Score =  288 bits (736), Expect = 1e-75,   Method: Compositional matrix adjust.
 Identities = 145/251 (57%), Positives = 172/251 (68%), Gaps = 41/251 (16%)

Query: 1   MIGRKNLG-VSSFLLVLLALGFFFATYNLLTMVIQ-NKAADEIG-------KLNPLTQMP 51
           MIGRKN G  S   LVLLAL F F TYNL+T +IQ      E+G         +P+ +MP
Sbjct: 1   MIGRKNTGQASPLFLVLLALTFCFVTYNLVTAIIQYGSVGREVGHDSYNHLSTDPIIEMP 60

Query: 52  EKTGGGNSGMRFHVALTATDAIYSQWQSRIMYYWYKKVKDMPRSDMGKFTRILHSGKADN 111
           EK     +   FHVALTATDA YS+WQ RIMYYWYKK K++P+S+MG FTRILHSGK DN
Sbjct: 61  EKVKRKKTKSPFHVALTATDAPYSKWQCRIMYYWYKKKKNLPQSEMGGFTRILHSGKPDN 120

Query: 112 LMDEIPSFVVDPLPEGLDRY--------------------------------LLEEISPT 139
           LMDEIP+ VVDPLP G+DR                                 L+E+I+PT
Sbjct: 121 LMDEIPTMVVDPLPAGMDRIVHTRQNLKPIHRYSLTTSIDPIGNSPVIIRKDLIEKIAPT 180

Query: 140 WLNVSLRMKDDHETDKQFGWVLEMYAYAVASALHGVRHILRKDFMLQPPWDPEVGKRFIL 199
           W+N+SL+MK+D E DK FGWVLEMYAYAVASALHGV+H+LRKDFMLQPPWD  +G++FI+
Sbjct: 181 WMNISLKMKEDPEADKIFGWVLEMYAYAVASALHGVQHVLRKDFMLQPPWDLAIGRKFII 240

Query: 200 HYTYGCDYNLK 210
           HYTYGCDYNLK
Sbjct: 241 HYTYGCDYNLK 251




Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|4567251|gb|AAD23665.1| unknown protein [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|255570157|ref|XP_002526039.1| conserved hypothetical protein [Ricinus communis] gi|223534620|gb|EEF36316.1| conserved hypothetical protein [Ricinus communis] Back     alignment and taxonomy information
>gi|449515905|ref|XP_004164988.1| PREDICTED: uncharacterized LOC101220530 [Cucumis sativus] Back     alignment and taxonomy information
>gi|224103959|ref|XP_002313261.1| predicted protein [Populus trichocarpa] gi|222849669|gb|EEE87216.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|225465845|ref|XP_002264860.1| PREDICTED: uncharacterized protein LOC100244671 [Vitis vinifera] Back     alignment and taxonomy information
>gi|147844794|emb|CAN83338.1| hypothetical protein VITISV_011144 [Vitis vinifera] Back     alignment and taxonomy information
>gi|296083855|emb|CBI24243.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|323370570|gb|ADV35716.2| root determined nodulation 1 [Medicago truncatula] Back     alignment and taxonomy information
>gi|356577618|ref|XP_003556921.1| PREDICTED: uncharacterized protein LOC100786003 [Glycine max] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query212
TAIR|locus:2185046358 AT5G13500 "AT5G13500" [Arabido 0.424 0.251 0.677 1.1e-66
TAIR|locus:504955105366 AT5G25265 "AT5G25265" [Arabido 0.433 0.251 0.642 1.1e-30
TAIR|locus:2059573358 AT2G25260 "AT2G25260" [Arabido 0.433 0.256 0.631 4.9e-30
TAIR|locus:2185046 AT5G13500 "AT5G13500" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 355 (130.0 bits), Expect = 1.1e-66, Sum P(2) = 1.1e-66
 Identities = 63/93 (67%), Positives = 76/93 (81%)

Query:   121 VDPL---PEGLDRYLLEEISPTWLNVSLRMKDDHETDKQFGWVLEMYAYAVASALHGVRH 177
             +DP+   P  + +  LE+I+PTW+NVSL MK+D ETDK FGWVLEMY YA+ASA+HGVRH
Sbjct:   208 IDPIGNSPVIISKESLEKIAPTWMNVSLTMKNDPETDKAFGWVLEMYGYAIASAIHGVRH 267

Query:   178 ILRKDFMLQPPWDPEVGKRFILHYTYGCDYNLK 210
             ILRKDFMLQPPWD     +FI+HYTYGCDYN+K
Sbjct:   268 ILRKDFMLQPPWDLSTKGKFIIHYTYGCDYNMK 300


GO:0008150 "biological_process" evidence=ND
GO:0005794 "Golgi apparatus" evidence=IDA
GO:0005768 "endosome" evidence=IDA
GO:0005802 "trans-Golgi network" evidence=IDA
GO:0016757 "transferase activity, transferring glycosyl groups" evidence=ISM
TAIR|locus:504955105 AT5G25265 "AT5G25265" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2059573 AT2G25260 "AT2G25260" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!


Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Fail to connect to STRING server


Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Conserved Domains Detected by HHsearch ?

No hit with probability above 80.00


Homologous Structure Templates

Structure Templates Detected by BLAST ?

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST ?

No hit with e-value below 0.005

Structure Templates Detected by HHsearch ?

No hit with probability above 80.00


Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch ?

No hit with probability above 80.00