Citrus Sinensis ID: 028220

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210--
Protein Sequence
MDGPVGGSRASGGNGMVSNQANDTTTVAADDPKQNLNQVINSVQKTLGLLHQLYLTVSSFNAASQLPLLQRLNSLVSELDNMVKLSEKCNIQVPTEVLNLIDDGKNPDEFTRDVINSCIAKNQVTKGKTDAFKSLRKHLLDELEQTFPDEVEAYREIRANSAAVSNAILSEAHHVEWMLSICCQFFMFLILYILLSVLYDIRVEQIVKGNQA
Secondary Structure (PSIPRED)
cccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccc
Secondary Structure Prediction (SSPRO)
cccccccccccccccEEcccccccccccccccHHHHHHHHHHHHHHHHHHHHcEEEEEccccccHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHccccccHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHcccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEHEEEccccc
Coil and Loop (DISEMBL)
mdgpvggsrasggngmvsnqandtttvaaddpkqnLNQVINSVQKTLGLLHQLYLTVssfnaasqlPLLQRLNSLVSELDNMVklsekcniqvpTEVLnliddgknpdefTRDVINSCIaknqvtkgkTDAFKSLRKHLLDELEQTFPDEVEAYREIRANSAAVSNAILSEAHHVEWMLSICCQFFMFLILYILLSVLYDIRVEQIVKGNQA
Flexible Loop (DISEMBL)
mdgpvggsrasggngmvSNQANDTTTVAADDPKQNLNQVINSVQKTLGLLHQLYLTVSSFNAASQLPLLQRLNSLVSELDNMVKLSEKCNIQVPTEVLNLIDDGKNPDEFTRDVINsciaknqvtkgkTDAFKSLRKHLLDELEQTFPDEVEAYREIRANSAAVSNAILSEAHHVEWMLSICCQFFMFLILYILLSVLYDIRVEQIVKGNQA
Low Complexity Region (SEG)
MDGPVGGSRASGGNGMVSNQANDTTTVAADDPKQNLNQVINSVQKTLGLLHQLYLTVSSFNAASQLPLLQRLNSLVSELDNMVKLSEKCNIQVPTEVLNLIDDGKNPDEFTRDVINSCIAKNQVTKGKTDAFKSLRKHLLDELEQTFPDEVEAYREIRANSAAVSNAILSEAHHVEWMLSICCQFFMFLILYILLSVLYDIRVEQIVKGNQA
Disordered region (IsUnstruct)
************************************NQVINSVQKTLGLLHQLYLTVSSFNAASQLPLLQRLNSLVSELDNMVKLSEKCNIQVPTEVLNLIDDGKNPDEFTRDVINSCIAKNQVTKGKTDAFKSLRKHLLDELEQTFPDEVEAYREIRANSAAVSNAILSEAHHVEWMLSICCQFFMFLILYILLSVLYDIRVEQIV*****
Disordered Region (DISOPRED)
****************************************NSVQKTLGLLHQLYLTVSSFN******LLQRLNSLVSELDNMVKLSEKCNIQVPTEVLNLIDDGKNPDEFTRDVINSCIA**Q**KGKTDAFKSLRKHLLDELEQTFPDEVE***************************SICCQFFMFLILYILLSVLYDIRVEQIVK****
Disordered Region (DISEMBL)
***********GGNGMVSNQANDTTTVAADDPKQNLNQVINSVQKTLGLLHQLYLTVSSFNAASQLPLLQRLNSLVSELDNMVKLSEKCNIQVPTEVLNLIDDGKNPDEFTRDVINSCIAKNQVTKGKTDAFKSLRKHLLDELEQTFPDEVEAYREIRANSAAVSNAILSEAHHVEWMLSICCQFFMFLILYILLSVLYDIRVEQIVKGNQA
Disordered Region (DISPRO)
**************************V*ADDPKQNLNQVINSVQKTLGLLHQLYLTVSSFNAASQLPLLQRLNSLVSELDNMVKLSEKCNIQVPTEVLNLIDDGKNPDEFTRDVINSCIAKNQVTKGKTDAFKSLRKHLLDELEQTFPDEVEAYREIRANSA**SNAILSEAHHVEWMLSICCQFFMFLILYILLSVLYDIRVEQIVKGN**
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiii
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MDGPVGGSRASGGNGMVSNQANDTTTVAADDPKQNLNQVINSVQKTLGLLHQLYLTVSSFNAASQLPLLQRLNSLVSELDNMVKLSEKCNIQVPTEVLNLIDDGKNPDEFTRDVINSCIAKNQVTKGKTDAFKSLRKHLLDELEQTFPDEVEAYREIRANSAAVSNAILSEAHHVEWMLSICCQFFMFLILYILLSVLYDIRVEQIVKGNQA
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	212	2.2.26 [Sep-21-2011]
F4HPA7	189	Mediator of RNA polymeras	yes	no	0.726	0.814	0.756	2e-64
Q9FHZ2	186	Mediator of RNA polymeras	no	no	0.698	0.795	0.735	7e-56
Q16G71	130	Mediator of RNA polymeras	N/A	no	0.528	0.861	0.366	6e-18
Q7Q5R5	130	Mediator of RNA polymeras	yes	no	0.528	0.861	0.366	2e-17
Q9CXU0	135	Mediator of RNA polymeras	yes	no	0.622	0.977	0.330	1e-15
Q5R6P5	135	Mediator of RNA polymeras	yes	no	0.622	0.977	0.330	2e-15
Q9BTT4	135	Mediator of RNA polymeras	yes	no	0.622	0.977	0.330	2e-15
Q3ZCF2	135	Mediator of RNA polymeras	yes	no	0.622	0.977	0.330	2e-15
Q6DJ25	135	Mediator of RNA polymeras	yes	no	0.547	0.859	0.367	3e-15
Q6IP67	135	Mediator of RNA polymeras	N/A	no	0.589	0.925	0.341	6e-15

>sp|F4HPA7|MD10B_ARATH Mediator of RNA polymerase II transcription subunit 10b OS=Arabidopsis thaliana GN=MED10B PE=1 SV=1

 Score =  245 bits (626), Expect = 2e-64,   Method: Compositional matrix adjust.
 Identities = 118/156 (75%), Positives = 136/156 (87%), Gaps = 2/156 (1%)

Query: 12  GGNGMVSNQAND--TTTVAADDPKQNLNQVINSVQKTLGLLHQLYLTVSSFNAASQLPLL 69
           G NG +  Q ND  +T   ADD K+NL+QVINS++KTLG+LHQL+LTV+SF  ASQL LL
Sbjct: 13  GSNGTIRYQTNDGTSTVTVADDSKENLSQVINSIEKTLGVLHQLHLTVTSFTPASQLHLL 72

Query: 70  QRLNSLVSELDNMVKLSEKCNIQVPTEVLNLIDDGKNPDEFTRDVINSCIAKNQVTKGKT 129
           QRLNSLV ELDNM KLSEKCNIQ+P EVLNLIDDGKNPDEFT+DV+NSCIA+NQVTKGKT
Sbjct: 73  QRLNSLVMELDNMTKLSEKCNIQIPMEVLNLIDDGKNPDEFTKDVLNSCIARNQVTKGKT 132

Query: 130 DAFKSLRKHLLDELEQTFPDEVEAYREIRANSAAVS 165
           DAFK LRKH+L+ELEQ FPDEV+ YREIRA+SAAV+
Sbjct: 133 DAFKDLRKHILEELEQNFPDEVDMYREIRASSAAVT 168

Component of the Mediator complex, a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. The Mediator complex, having a compact conformation in its free form, is recruited to promoters by direct interactions with regulatory proteins and serves for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors.
Arabidopsis thaliana (taxid: 3702)

>sp|Q9FHZ2|MD10A_ARATH Mediator of RNA polymerase II transcription subunit 10a OS=Arabidopsis thaliana GN=MED10A PE=1 SV=1

 Score =  216 bits (551), Expect = 7e-56,   Method: Compositional matrix adjust.
 Identities = 111/151 (73%), Positives = 124/151 (82%), Gaps = 3/151 (1%)

Query: 14  NGMVSNQANDTTTVAADDPKQNLNQVINSVQKTLGLLHQLYLTVSSFNAASQLPLLQRLN 73
           NG +  + N   TV  DD  + LNQ+INS QK L LLHQL LTVSSF  ASQL LLQRLN
Sbjct: 15  NGSIKTEINAIATV--DDSNEKLNQIINSNQKILELLHQLKLTVSSFTPASQLHLLQRLN 72

Query: 74  SLVSELDNMVKLSEKCNIQVPTEVLNLIDDGKNPDEFTRDVIN-SCIAKNQVTKGKTDAF 132
           SLV ELDNM KLS+KCNIQVP EVLNLIDDGKNPDEFT+DV+N +CIAKNQVTKGK+DAF
Sbjct: 73  SLVMELDNMAKLSDKCNIQVPIEVLNLIDDGKNPDEFTKDVLNKNCIAKNQVTKGKSDAF 132

Query: 133 KSLRKHLLDELEQTFPDEVEAYREIRANSAA 163
           K LRKHLL+ELEQ FPDEV+ YR+IRA+ AA
Sbjct: 133 KGLRKHLLEELEQAFPDEVDRYRDIRASYAA 163

Component of the Mediator complex, a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. The Mediator complex, having a compact conformation in its free form, is recruited to promoters by direct interactions with regulatory proteins and serves for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors.

Arabidopsis thaliana (taxid: 3702)

>sp|Q16G71|MED10_AEDAE Mediator of RNA polymerase II transcription subunit 10 OS=Aedes aegypti GN=MED10 PE=3 SV=1

 Score = 90.9 bits (224), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 41/112 (36%), Positives = 69/112 (61%)

Query: 50  LHQLYLTVSSFNAASQLPLLQRLNSLVSELDNMVKLSEKCNIQVPTEVLNLIDDGKNPDE 109
           + Q+ + VS F    Q  L Q++ SLV+ L  + KL  + ++ VP EV + ID G+NP  
Sbjct: 19  VRQIRIIVSDFQPQGQNVLNQKIQSLVTGLQEIDKLKNQVDVNVPLEVFDYIDQGRNPQL 78

Query: 110 FTRDVINSCIAKNQVTKGKTDAFKSLRKHLLDELEQTFPDEVEAYREIRANS 161
           +T+D I+  + KN+  KGK D+++  + +L+ EL++TFP E+  Y+ IR + 
Sbjct: 79  YTKDCIDKALTKNEEVKGKIDSYRKFKSNLMKELDETFPTEIAKYKAIRGDE 130

Component of the Mediator complex, a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. Mediator is recruited to promoters by direct interactions with regulatory proteins and serves as a scaffold for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors.

Aedes aegypti (taxid: 7159)

>sp|Q7Q5R5|MED10_ANOGA Mediator of RNA polymerase II transcription subunit 10 OS=Anopheles gambiae GN=MED10 PE=3 SV=2

 Score = 89.4 bits (220), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 41/112 (36%), Positives = 68/112 (60%)

Query: 50  LHQLYLTVSSFNAASQLPLLQRLNSLVSELDNMVKLSEKCNIQVPTEVLNLIDDGKNPDE 109
           + Q+ + VS F    Q  L Q++ SLV+ L  + KL  + ++ VP EV + ID G+NP  
Sbjct: 19  VRQIRIIVSDFQPQGQNVLNQKIQSLVTGLQEIDKLKNQIDVNVPLEVFDYIDQGRNPQL 78

Query: 110 FTRDVINSCIAKNQVTKGKTDAFKSLRKHLLDELEQTFPDEVEAYREIRANS 161
           +T+D I+  + KN+  KGK D+++  + +L+ EL +TFP E+  Y+ IR + 
Sbjct: 79  YTKDCIDKALTKNEEVKGKIDSYRKFKSNLMKELSETFPVEISKYKAIRGDE 130

Component of the Mediator complex, a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. Mediator is recruited to promoters by direct interactions with regulatory proteins and serves as a scaffold for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors.

Anopheles gambiae (taxid: 7165)

>sp|Q9CXU0|MED10_MOUSE Mediator of RNA polymerase II transcription subunit 10 OS=Mus musculus GN=Med10 PE=1 SV=1

 Score = 83.2 bits (204), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 44/133 (33%), Positives = 74/133 (55%), Gaps = 1/133 (0%)

Query: 34  QNLNQVINSVQKTLGLLHQLYLTVSSFNAASQLPLLQRLNSLVSELDNMVKLSEKC-NIQ 92
           +  + +   ++K +  + QL + VS F  +SQ  L Q+LN +V+ L ++ K  ++  +I 
Sbjct: 3   EKFDHLEEHLEKFVENIRQLGIIVSDFQPSSQAGLSQKLNFIVTGLQDIDKCRQQLHDIT 62

Query: 93  VPTEVLNLIDDGKNPDEFTRDVINSCIAKNQVTKGKTDAFKSLRKHLLDELEQTFPDEVE 152
           VP EV   ID G+NP  +T++ +   +AKN+  KGK D  K  +  L+ EL + FP+++ 
Sbjct: 63  VPLEVFEYIDQGRNPQLYTKECLERALAKNEQVKGKIDTMKKFKSLLIQELSKVFPEDMA 122

Query: 153 AYREIRANSAAVS 165
            YR IR      S
Sbjct: 123 KYRSIRGEDHPPS 135

Component of the Mediator complex, a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. Mediator is recruited to promoters by direct interactions with regulatory proteins and serves as a scaffold for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors.

Mus musculus (taxid: 10090)

>sp|Q5R6P5|MED10_PONAB Mediator of RNA polymerase II transcription subunit 10 OS=Pongo abelii GN=MED10 PE=2 SV=1

 Score = 82.4 bits (202), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 44/133 (33%), Positives = 74/133 (55%), Gaps = 1/133 (0%)

Query: 34  QNLNQVINSVQKTLGLLHQLYLTVSSFNAASQLPLLQRLNSLVSELDNMVKLSEKC-NIQ 92
           +  + +   ++K +  + QL + VS F  +SQ  L Q+LN +V+ L ++ K  ++  +I 
Sbjct: 3   EKFDHLEEHLEKFVENIRQLGIIVSDFQPSSQAGLNQKLNFIVTGLQDIDKCRQQLHDIT 62

Query: 93  VPTEVLNLIDDGKNPDEFTRDVINSCIAKNQVTKGKTDAFKSLRKHLLDELEQTFPDEVE 152
           VP EV   ID G+NP  +T++ +   +AKN+  KGK D  K  +  L+ EL + FP+++ 
Sbjct: 63  VPLEVFEYIDQGRNPQLYTKECLERALAKNEQVKGKIDTMKKFKSLLIQELSKVFPEDMA 122

Query: 153 AYREIRANSAAVS 165
            YR IR      S
Sbjct: 123 KYRSIRGEDHPPS 135

Component of the Mediator complex, a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. Mediator is recruited to promoters by direct interactions with regulatory proteins and serves as a scaffold for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors.

Pongo abelii (taxid: 9601)

>sp|Q9BTT4|MED10_HUMAN Mediator of RNA polymerase II transcription subunit 10 OS=Homo sapiens GN=MED10 PE=1 SV=1

 Score = 82.4 bits (202), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 44/133 (33%), Positives = 74/133 (55%), Gaps = 1/133 (0%)

Query: 34  QNLNQVINSVQKTLGLLHQLYLTVSSFNAASQLPLLQRLNSLVSELDNMVKLSEKC-NIQ 92
           +  + +   ++K +  + QL + VS F  +SQ  L Q+LN +V+ L ++ K  ++  +I 
Sbjct: 3   EKFDHLEEHLEKFVENIRQLGIIVSDFQPSSQAGLNQKLNFIVTGLQDIDKCRQQLHDIT 62

Query: 93  VPTEVLNLIDDGKNPDEFTRDVINSCIAKNQVTKGKTDAFKSLRKHLLDELEQTFPDEVE 152
           VP EV   ID G+NP  +T++ +   +AKN+  KGK D  K  +  L+ EL + FP+++ 
Sbjct: 63  VPLEVFEYIDQGRNPQLYTKECLERALAKNEQVKGKIDTMKKFKSLLIQELSKVFPEDMA 122

Query: 153 AYREIRANSAAVS 165
            YR IR      S
Sbjct: 123 KYRSIRGEDHPPS 135

Component of the Mediator complex, a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. Mediator is recruited to promoters by direct interactions with regulatory proteins and serves as a scaffold for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors.

Homo sapiens (taxid: 9606)

>sp|Q3ZCF2|MED10_BOVIN Mediator of RNA polymerase II transcription subunit 10 OS=Bos taurus GN=MED10 PE=2 SV=1

 Score = 82.4 bits (202), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 44/133 (33%), Positives = 74/133 (55%), Gaps = 1/133 (0%)

Query: 34  QNLNQVINSVQKTLGLLHQLYLTVSSFNAASQLPLLQRLNSLVSELDNMVKLSEKC-NIQ 92
           +  + +   ++K +  + QL + VS F  +SQ  L Q+LN +V+ L ++ K  ++  +I 
Sbjct: 3   EKFDHLEEHLEKFVENIRQLGIIVSDFQPSSQAGLNQKLNFIVTGLQDIDKCRQQLHDIT 62

Query: 93  VPTEVLNLIDDGKNPDEFTRDVINSCIAKNQVTKGKTDAFKSLRKHLLDELEQTFPDEVE 152
           VP EV   ID G+NP  +T++ +   +AKN+  KGK D  K  +  L+ EL + FP+++ 
Sbjct: 63  VPLEVFEYIDQGRNPQLYTKECLERALAKNEQVKGKIDTMKKFKSLLIQELSKVFPEDMA 122

Query: 153 AYREIRANSAAVS 165
            YR IR      S
Sbjct: 123 KYRSIRGEDHPPS 135

Component of the Mediator complex, a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. Mediator is recruited to promoters by direct interactions with regulatory proteins and serves as a scaffold for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors.

Bos taurus (taxid: 9913)

>sp|Q6DJ25|MED10_XENTR Mediator of RNA polymerase II transcription subunit 10 OS=Xenopus tropicalis GN=med10 PE=2 SV=1

 Score = 82.0 bits (201), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 43/117 (36%), Positives = 68/117 (58%), Gaps = 1/117 (0%)

Query: 50  LHQLYLTVSSFNAASQLPLLQRLNSLVSELDNMVKLSEKC-NIQVPTEVLNLIDDGKNPD 108
           + QL + VS F  +SQ  L Q+LN LV+ L ++ K  ++  +I VP EV + ID G+NP 
Sbjct: 19  IRQLGIIVSDFQPSSQAGLNQKLNFLVTGLQDIDKCRQQLHDITVPLEVFDYIDQGRNPQ 78

Query: 109 EFTRDVINSCIAKNQVTKGKTDAFKSLRKHLLDELEQTFPDEVEAYREIRANSAAVS 165
            +T++ +   +AKN+  KGK D  K  +  L+ EL + FP+++  Y+ IR      S
Sbjct: 79  LYTKECLERALAKNEQVKGKIDTLKKFKSLLIQELSKVFPEDMAKYKAIRGEDHPPS 135

Component of the Mediator complex, a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. Mediator is recruited to promoters by direct interactions with regulatory proteins and serves as a scaffold for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors.

Xenopus tropicalis (taxid: 8364)

>sp|Q6IP67|MED10_XENLA Mediator of RNA polymerase II transcription subunit 10 OS=Xenopus laevis GN=med10 PE=2 SV=1

 Score = 80.9 bits (198), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 43/126 (34%), Positives = 72/126 (57%), Gaps = 1/126 (0%)

Query: 41  NSVQKTLGLLHQLYLTVSSFNAASQLPLLQRLNSLVSELDNMVKLSEKC-NIQVPTEVLN 99
           + ++K +  + QL + VS F  +SQ  L Q+LN LV  L ++ K  ++  +I VP EV +
Sbjct: 10  DHLEKFVENIRQLGIIVSDFQPSSQAGLNQKLNFLVRGLQDIDKCRQQLHDITVPLEVFD 69

Query: 100 LIDDGKNPDEFTRDVINSCIAKNQVTKGKTDAFKSLRKHLLDELEQTFPDEVEAYREIRA 159
            ID G+NP  +T++ +   +AKN+  KGK D  K  +  L+ EL + FP+++  Y+ +R 
Sbjct: 70  YIDQGRNPQLYTKECLERALAKNEQVKGKIDTLKKFKSLLIQELSKVFPEDMAKYKAVRG 129

Query: 160 NSAAVS 165
                S
Sbjct: 130 EDHPPS 135

Component of the Mediator complex, a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. Mediator is recruited to promoters by direct interactions with regulatory proteins and serves as a scaffold for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors.

Xenopus laevis (taxid: 8355)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	212
255573909	187	nut2, putative [Ricinus communis] gi|223	0.778	0.882	0.819	1e-69
224072323	185	predicted protein [Populus trichocarpa]	0.721	0.827	0.844	3e-69
224057994	190	predicted protein [Populus trichocarpa]	0.698	0.778	0.872	4e-69
297742438	284	unnamed protein product [Vitis vinifera]	0.792	0.591	0.752	8e-68
225426586	194	PREDICTED: mediator of RNA polymerase II	0.792	0.865	0.752	2e-67
297851016	309	T24P13.4 [Arabidopsis lyrata subsp. lyra	0.754	0.517	0.768	1e-66
449527861	166	PREDICTED: mediator of RNA polymerase II	0.740	0.945	0.817	2e-66
9295719	309	T24P13.4 [Arabidopsis thaliana]	0.726	0.498	0.762	1e-63
449456797	189	PREDICTED: mediator of RNA polymerase II	0.693	0.777	0.831	6e-63
42571651	189	Mediator complex, subunit Med10 [Arabido	0.726	0.814	0.756	8e-63

>gi|255573909|ref|XP_002527873.1| nut2, putative [Ricinus communis] gi|223532724|gb|EEF34504.1| nut2, putative [Ricinus communis]

 Score =  268 bits (685), Expect = 1e-69,   Method: Compositional matrix adjust.
 Identities = 136/166 (81%), Positives = 142/166 (85%), Gaps = 1/166 (0%)

Query: 1   MDGPVGGSRASGGNGMVSNQANDTTTVAA-DDPKQNLNQVINSVQKTLGLLHQLYLTVSS 59
           MD     +  SGGNGM+ +Q NDT   AA DDPKQNLN VINS+QKTLGLLHQLYLTVSS
Sbjct: 1   MDSSQNATVGSGGNGMLPSQVNDTAAAAAADDPKQNLNNVINSIQKTLGLLHQLYLTVSS 60

Query: 60  FNAASQLPLLQRLNSLVSELDNMVKLSEKCNIQVPTEVLNLIDDGKNPDEFTRDVINSCI 119
           FN ASQLPLLQRLN LV ELD M KLSEKCNIQVP EVLNLIDDGKNPDEFTRDVINSCI
Sbjct: 61  FNTASQLPLLQRLNGLVLELDKMAKLSEKCNIQVPLEVLNLIDDGKNPDEFTRDVINSCI 120

Query: 120 AKNQVTKGKTDAFKSLRKHLLDELEQTFPDEVEAYREIRANSAAVS 165
           AKNQVTKGKTDAFK LRKHLL+ELEQ FPDEVE+YREIRA SAA S
Sbjct: 121 AKNQVTKGKTDAFKGLRKHLLEELEQAFPDEVESYREIRAISAAES 166

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224072323|ref|XP_002303692.1| predicted protein [Populus trichocarpa] gi|222841124|gb|EEE78671.1| predicted protein [Populus trichocarpa]

 Score =  266 bits (681), Expect = 3e-69,   Method: Compositional matrix adjust.
 Identities = 130/154 (84%), Positives = 138/154 (89%), Gaps = 1/154 (0%)

Query: 10  ASGGNGMVSNQANDTTTVAADDPKQNLNQVINSVQKTLGLLHQLYLTVSSFNAASQLPLL 69
            SGGNGM++   NDT   A DDPKQNLNQVI+S+QKTLG LHQLYLTVSSFN ASQLPLL
Sbjct: 10  GSGGNGMLATPLNDTA-AAVDDPKQNLNQVIDSIQKTLGQLHQLYLTVSSFNTASQLPLL 68

Query: 70  QRLNSLVSELDNMVKLSEKCNIQVPTEVLNLIDDGKNPDEFTRDVINSCIAKNQVTKGKT 129
           QRLN LV+ELDNMVKLSE+CNIQVP EVLNLIDDGKNPDEFTR VINSCI KNQVTKGKT
Sbjct: 69  QRLNGLVTELDNMVKLSERCNIQVPMEVLNLIDDGKNPDEFTRGVINSCITKNQVTKGKT 128

Query: 130 DAFKSLRKHLLDELEQTFPDEVEAYREIRANSAA 163
           D FKSLRKHLL+ELEQTFPDEVE+YREIRA SAA
Sbjct: 129 DGFKSLRKHLLEELEQTFPDEVESYREIRAMSAA 162

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224057994|ref|XP_002299427.1| predicted protein [Populus trichocarpa] gi|222846685|gb|EEE84232.1| predicted protein [Populus trichocarpa]

 Score =  266 bits (680), Expect = 4e-69,   Method: Compositional matrix adjust.
 Identities = 130/149 (87%), Positives = 137/149 (91%), Gaps = 1/149 (0%)

Query: 16  MVSNQANDTTTVAA-DDPKQNLNQVINSVQKTLGLLHQLYLTVSSFNAASQLPLLQRLNS 74
           M++   NDT    A DDPKQNLNQVINS+QKTLGLLHQLYLTVSSFN ASQLPLLQRLN 
Sbjct: 19  MLAAPVNDTAAATAVDDPKQNLNQVINSIQKTLGLLHQLYLTVSSFNTASQLPLLQRLNG 78

Query: 75  LVSELDNMVKLSEKCNIQVPTEVLNLIDDGKNPDEFTRDVINSCIAKNQVTKGKTDAFKS 134
           LV+ELDNMVKLSEKCNIQVP EVLNLIDDGKNPDEF+RDVINSCIAKNQVTKGKTDAFKS
Sbjct: 79  LVTELDNMVKLSEKCNIQVPMEVLNLIDDGKNPDEFSRDVINSCIAKNQVTKGKTDAFKS 138

Query: 135 LRKHLLDELEQTFPDEVEAYREIRANSAA 163
           LRKHLL+ELEQTFPDEVE+YREIRA SAA
Sbjct: 139 LRKHLLEELEQTFPDEVESYREIRAMSAA 167

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297742438|emb|CBI34587.3| unnamed protein product [Vitis vinifera]

 Score =  262 bits (669), Expect = 8e-68,   Method: Compositional matrix adjust.
 Identities = 131/174 (75%), Positives = 146/174 (83%), Gaps = 6/174 (3%)

Query: 7   GSRASGGNGMVSNQANDTTTVA-----ADDPKQNLNQVINSVQKTLGLLHQLYLTVSSFN 61
           G+  SGGNG+   Q N     A     ++DPKQNLNQVINS+QKTLGLLHQLYLTVSSFN
Sbjct: 100 GTGVSGGNGITIPQINAAAAAATAGAGSEDPKQNLNQVINSIQKTLGLLHQLYLTVSSFN 159

Query: 62  AASQLPLLQRLNSLVSELDNMVKLSEKCNIQVPTEVLNLIDDGKNPDEFTRDVINSCIAK 121
            ASQLPLLQRLN+LVSELDNM KLSEKCNIQVP EVLNLID+GKNPDEFTRDV+NSCIAK
Sbjct: 160 VASQLPLLQRLNALVSELDNMTKLSEKCNIQVPMEVLNLIDEGKNPDEFTRDVLNSCIAK 219

Query: 122 NQVTKGKTDAFKSLRKHLLDELEQTFPDEVEAYREIRANSAAVSNAILSEAHHV 175
           NQ+TKGKTD+FK LR+HLL+ELEQ FPDEVE+YREIRA SAA S   L++A  V
Sbjct: 220 NQITKGKTDSFKGLRRHLLEELEQAFPDEVESYREIRAASAAESKR-LAQAQSV 272

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225426586|ref|XP_002280081.1| PREDICTED: mediator of RNA polymerase II transcription subunit 10 [Vitis vinifera]

 Score =  261 bits (666), Expect = 2e-67,   Method: Compositional matrix adjust.
 Identities = 131/174 (75%), Positives = 146/174 (83%), Gaps = 6/174 (3%)

Query: 7   GSRASGGNGMVSNQANDTTTVA-----ADDPKQNLNQVINSVQKTLGLLHQLYLTVSSFN 61
           G+  SGGNG+   Q N     A     ++DPKQNLNQVINS+QKTLGLLHQLYLTVSSFN
Sbjct: 10  GTGVSGGNGITIPQINAAAAAATAGAGSEDPKQNLNQVINSIQKTLGLLHQLYLTVSSFN 69

Query: 62  AASQLPLLQRLNSLVSELDNMVKLSEKCNIQVPTEVLNLIDDGKNPDEFTRDVINSCIAK 121
            ASQLPLLQRLN+LVSELDNM KLSEKCNIQVP EVLNLID+GKNPDEFTRDV+NSCIAK
Sbjct: 70  VASQLPLLQRLNALVSELDNMTKLSEKCNIQVPMEVLNLIDEGKNPDEFTRDVLNSCIAK 129

Query: 122 NQVTKGKTDAFKSLRKHLLDELEQTFPDEVEAYREIRANSAAVSNAILSEAHHV 175
           NQ+TKGKTD+FK LR+HLL+ELEQ FPDEVE+YREIRA SAA S   L++A  V
Sbjct: 130 NQITKGKTDSFKGLRRHLLEELEQAFPDEVESYREIRAASAAESKR-LAQAQSV 182

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297851016|ref|XP_002893389.1| T24P13.4 [Arabidopsis lyrata subsp. lyrata] gi|297339231|gb|EFH69648.1| T24P13.4 [Arabidopsis lyrata subsp. lyrata]

 Score =  258 bits (658), Expect = 1e-66,   Method: Compositional matrix adjust.
 Identities = 123/160 (76%), Positives = 139/160 (86%)

Query: 6   GGSRASGGNGMVSNQANDTTTVAADDPKQNLNQVINSVQKTLGLLHQLYLTVSSFNAASQ 65
            G   SG NG +  Q ND T+  ADD K+NL+QVINS++KTLG+LHQL+LTV+SF  ASQ
Sbjct: 149 AGIGGSGSNGTIRYQTNDGTSTVADDSKENLSQVINSIEKTLGVLHQLHLTVTSFTPASQ 208

Query: 66  LPLLQRLNSLVSELDNMVKLSEKCNIQVPTEVLNLIDDGKNPDEFTRDVINSCIAKNQVT 125
           L LLQRLNSLV ELDNM KLSEKCNIQVP EVLNLIDDGKNPDEFT+DV+NSCIA+NQVT
Sbjct: 209 LHLLQRLNSLVMELDNMTKLSEKCNIQVPMEVLNLIDDGKNPDEFTKDVLNSCIARNQVT 268

Query: 126 KGKTDAFKSLRKHLLDELEQTFPDEVEAYREIRANSAAVS 165
           KGKTDAFK LRKH+L+ELEQTFPDEV+ YREIRA+SAAVS
Sbjct: 269 KGKTDAFKDLRKHILEELEQTFPDEVDMYREIRASSAAVS 308

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449527861|ref|XP_004170927.1| PREDICTED: mediator of RNA polymerase II transcription subunit 10b-like, partial [Cucumis sativus]

 Score =  257 bits (656), Expect = 2e-66,   Method: Compositional matrix adjust.
 Identities = 130/159 (81%), Positives = 138/159 (86%), Gaps = 2/159 (1%)

Query: 5   VGGSRASGGNGMVSNQANDTTTVAADDPKQNLNQVINSVQKTLGLLHQLYLTVSSFNAAS 64
             G+  SGGNG V N    +TTV  DD KQNLNQVINS+QKTLG+LHQL LTVS+FNAA 
Sbjct: 10  AAGTDGSGGNGSVINDTPVSTTV--DDSKQNLNQVINSIQKTLGILHQLNLTVSNFNAAY 67

Query: 65  QLPLLQRLNSLVSELDNMVKLSEKCNIQVPTEVLNLIDDGKNPDEFTRDVINSCIAKNQV 124
           QLPLLQRLNSLV ELDNMVKLSEKC IQVP EVLNLIDDGKNPDEFTRDV+NSCIAKNQ 
Sbjct: 68  QLPLLQRLNSLVLELDNMVKLSEKCPIQVPMEVLNLIDDGKNPDEFTRDVLNSCIAKNQS 127

Query: 125 TKGKTDAFKSLRKHLLDELEQTFPDEVEAYREIRANSAA 163
           TKGKTDAFK LRKHLL+ELEQTFPDEVE+YREIRA SAA
Sbjct: 128 TKGKTDAFKGLRKHLLEELEQTFPDEVESYREIRAASAA 166

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|9295719|gb|AAF87025.1|AC006535_3 T24P13.4 [Arabidopsis thaliana]

 Score =  248 bits (633), Expect = 1e-63,   Method: Compositional matrix adjust.
 Identities = 119/156 (76%), Positives = 136/156 (87%), Gaps = 2/156 (1%)

Query: 12  GGNGMVSNQAND--TTTVAADDPKQNLNQVINSVQKTLGLLHQLYLTVSSFNAASQLPLL 69
           G NG +  Q ND  +T   ADD K+NL+QVINS++KTLG+LHQL+LTV+SF  ASQL LL
Sbjct: 153 GSNGTIRYQTNDGTSTVTVADDSKENLSQVINSIEKTLGVLHQLHLTVTSFTPASQLHLL 212

Query: 70  QRLNSLVSELDNMVKLSEKCNIQVPTEVLNLIDDGKNPDEFTRDVINSCIAKNQVTKGKT 129
           QRLNSLV ELDNM KLSEKCNIQ+P EVLNLIDDGKNPDEFT+DV+NSCIA+NQVTKGKT
Sbjct: 213 QRLNSLVMELDNMTKLSEKCNIQIPMEVLNLIDDGKNPDEFTKDVLNSCIARNQVTKGKT 272

Query: 130 DAFKSLRKHLLDELEQTFPDEVEAYREIRANSAAVS 165
           DAFK LRKH+L+ELEQ FPDEV+ YREIRA+SAAVS
Sbjct: 273 DAFKDLRKHILEELEQNFPDEVDMYREIRASSAAVS 308

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449456797|ref|XP_004146135.1| PREDICTED: mediator of RNA polymerase II transcription subunit 10b-like [Cucumis sativus]

 Score =  246 bits (627), Expect = 6e-63,   Method: Compositional matrix adjust.
 Identities = 123/148 (83%), Positives = 131/148 (88%), Gaps = 1/148 (0%)

Query: 22  NDT-TTVAADDPKQNLNQVINSVQKTLGLLHQLYLTVSSFNAASQLPLLQRLNSLVSELD 80
           NDT  +   DD KQNLNQVINS+QKTLG+LHQL LTVS+FNAA QLPLLQRLNSLV ELD
Sbjct: 24  NDTPVSTTVDDSKQNLNQVINSIQKTLGILHQLNLTVSNFNAAYQLPLLQRLNSLVLELD 83

Query: 81  NMVKLSEKCNIQVPTEVLNLIDDGKNPDEFTRDVINSCIAKNQVTKGKTDAFKSLRKHLL 140
           NMVKLSEKC IQVP EVLNLIDDGKNPDEFTRDV+NSCIAKNQ TKGKTDAFK LRKHLL
Sbjct: 84  NMVKLSEKCPIQVPMEVLNLIDDGKNPDEFTRDVLNSCIAKNQSTKGKTDAFKGLRKHLL 143

Query: 141 DELEQTFPDEVEAYREIRANSAAVSNAI 168
           +ELEQTFPDEVE+YREIRA SAA +  I
Sbjct: 144 EELEQTFPDEVESYREIRAASAAEAKRI 171

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|42571651|ref|NP_973916.1| Mediator complex, subunit Med10 [Arabidopsis thaliana] gi|395406775|sp|F4HPA7.1|MD10B_ARATH RecName: Full=Mediator of RNA polymerase II transcription subunit 10b gi|332192596|gb|AEE30717.1| Mediator complex, subunit Med10 [Arabidopsis thaliana]

 Score =  245 bits (626), Expect = 8e-63,   Method: Compositional matrix adjust.
 Identities = 118/156 (75%), Positives = 136/156 (87%), Gaps = 2/156 (1%)

Query: 12  GGNGMVSNQAND--TTTVAADDPKQNLNQVINSVQKTLGLLHQLYLTVSSFNAASQLPLL 69
           G NG +  Q ND  +T   ADD K+NL+QVINS++KTLG+LHQL+LTV+SF  ASQL LL
Sbjct: 13  GSNGTIRYQTNDGTSTVTVADDSKENLSQVINSIEKTLGVLHQLHLTVTSFTPASQLHLL 72

Query: 70  QRLNSLVSELDNMVKLSEKCNIQVPTEVLNLIDDGKNPDEFTRDVINSCIAKNQVTKGKT 129
           QRLNSLV ELDNM KLSEKCNIQ+P EVLNLIDDGKNPDEFT+DV+NSCIA+NQVTKGKT
Sbjct: 73  QRLNSLVMELDNMTKLSEKCNIQIPMEVLNLIDDGKNPDEFTKDVLNSCIARNQVTKGKT 132

Query: 130 DAFKSLRKHLLDELEQTFPDEVEAYREIRANSAAVS 165
           DAFK LRKH+L+ELEQ FPDEV+ YREIRA+SAAV+
Sbjct: 133 DAFKDLRKHILEELEQNFPDEVDMYREIRASSAAVT 168

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	212
TAIR|locus:505006147	189	AT1G26665 [Arabidopsis thalian	0.792	0.888	0.725	6.4e-60
TAIR|locus:2165680	186	MED10A [Arabidopsis thaliana (	0.698	0.795	0.735	2.1e-52
MGI|MGI:106331	135	Med10 "mediator of RNA polymer	0.547	0.859	0.367	5.3e-17
RGD|1310128	135	Med10 "mediator complex subuni	0.547	0.859	0.367	5.3e-17
UNIPROTKB|Q3ZCF2	135	MED10 "Mediator of RNA polymer	0.547	0.859	0.367	6.7e-17
UNIPROTKB|Q9BTT4	135	MED10 "Mediator of RNA polymer	0.547	0.859	0.367	6.7e-17
UNIPROTKB|F1S049	135	MED10 "Uncharacterized protein	0.547	0.859	0.367	6.7e-17
UNIPROTKB|E1BVD0	134	MED10 "Uncharacterized protein	0.547	0.865	0.358	1.8e-16
FB|FBgn0036581	133	MED10 "Mediator complex subuni	0.599	0.954	0.363	6e-16
ZFIN|ZDB-GENE-070117-2423	134	med10 "mediator of RNA polymer	0.556	0.880	0.336	1.3e-15

TAIR|locus:505006147 AT1G26665 [Arabidopsis thaliana (taxid:3702)]

 Score = 614 (221.2 bits), Expect = 6.4e-60, P = 6.4e-60
 Identities = 124/171 (72%), Positives = 143/171 (83%)

Query:     1 MDGPVGGSRASGG-NGMVSNQAND-TTTVA-ADDPKQNLNQVINSVQKTLGLLHQLYLTV 57
             MD     S   GG NG +  Q ND T+TV  ADD K+NL+QVINS++KTLG+LHQL+LTV
Sbjct:     1 MDPTQNTSAGIGGSNGTIRYQTNDGTSTVTVADDSKENLSQVINSIEKTLGVLHQLHLTV 60

Query:    58 SSFNAASQLPLLQRLNSLVSELDNMVKLSEKCNIQVPTEVLNLIDDGKNPDEFTRDVINS 117
             +SF  ASQL LLQRLNSLV ELDNM KLSEKCNIQ+P EVLNLIDDGKNPDEFT+DV+NS
Sbjct:    61 TSFTPASQLHLLQRLNSLVMELDNMTKLSEKCNIQIPMEVLNLIDDGKNPDEFTKDVLNS 120

Query:   118 CIAKNQVTKGKTDAFKSLRKHLLDELEQTFPDEVEAYREIRANSAAVSNAI 168
             CIA+NQVTKGKTDAFK LRKH+L+ELEQ FPDEV+ YREIRA+SAAV+  +
Sbjct:   121 CIARNQVTKGKTDAFKDLRKHILEELEQNFPDEVDMYREIRASSAAVTKRL 171

GO:0001104 "RNA polymerase II transcription cofactor activity" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0006357 "regulation of transcription from RNA polymerase II promoter" evidence=IEA

GO:0016592 "mediator complex" evidence=IEA

TAIR|locus:2165680 MED10A [Arabidopsis thaliana (taxid:3702)]

 Score = 543 (196.2 bits), Expect = 2.1e-52, P = 2.1e-52
 Identities = 111/151 (73%), Positives = 124/151 (82%)

Query:    14 NGMVSNQANDTTTVAADDPKQNLNQVINSVQKTLGLLHQLYLTVSSFNAASQLPLLQRLN 73
             NG +  + N   TV  DD  + LNQ+INS QK L LLHQL LTVSSF  ASQL LLQRLN
Sbjct:    15 NGSIKTEINAIATV--DDSNEKLNQIINSNQKILELLHQLKLTVSSFTPASQLHLLQRLN 72

Query:    74 SLVSELDNMVKLSEKCNIQVPTEVLNLIDDGKNPDEFTRDVIN-SCIAKNQVTKGKTDAF 132
             SLV ELDNM KLS+KCNIQVP EVLNLIDDGKNPDEFT+DV+N +CIAKNQVTKGK+DAF
Sbjct:    73 SLVMELDNMAKLSDKCNIQVPIEVLNLIDDGKNPDEFTKDVLNKNCIAKNQVTKGKSDAF 132

Query:   133 KSLRKHLLDELEQTFPDEVEAYREIRANSAA 163
             K LRKHLL+ELEQ FPDEV+ YR+IRA+ AA
Sbjct:   133 KGLRKHLLEELEQAFPDEVDRYRDIRASYAA 163

GO:0001104 "RNA polymerase II transcription cofactor activity" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0006357 "regulation of transcription from RNA polymerase II promoter" evidence=IEA

GO:0016592 "mediator complex" evidence=IDA

MGI|MGI:106331 Med10 "mediator of RNA polymerase II transcription, subunit 10 homolog (NUT2, S. cerevisiae)" [Mus musculus (taxid:10090)]

 Score = 209 (78.6 bits), Expect = 5.3e-17, P = 5.3e-17
 Identities = 43/117 (36%), Positives = 70/117 (59%)

Query:    43 VQKTLGLLHQLYLTVSSFNAASQLPLLQRLNSLVSELDNMVKLSEKCN-IQVPTEVLNLI 101
             ++K +  + QL + VS F  +SQ  L Q+LN +V+ L ++ K  ++ + I VP EV   I
Sbjct:    12 LEKFVENIRQLGIIVSDFQPSSQAGLSQKLNFIVTGLQDIDKCRQQLHDITVPLEVFEYI 71

Query:   102 DDGKNPDEFTRDVINSCIAKNQVTKGKTDAFKSLRKHLLDELEQTFPDEVEAYREIR 158
             D G+NP  +T++ +   +AKN+  KGK D  K  +  L+ EL + FP+++  YR IR
Sbjct:    72 DQGRNPQLYTKECLERALAKNEQVKGKIDTMKKFKSLLIQELSKVFPEDMAKYRSIR 128

GO:0001104 "RNA polymerase II transcription cofactor activity" evidence=IEA

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=IEA

GO:0006351 "transcription, DNA-dependent" evidence=IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0006357 "regulation of transcription from RNA polymerase II promoter" evidence=IEA

GO:0016592 "mediator complex" evidence=IDA

GO:0019827 "stem cell maintenance" evidence=IMP

GO:0045944 "positive regulation of transcription from RNA polymerase II promoter" evidence=IDA

RGD|1310128 Med10 "mediator complex subunit 10" [Rattus norvegicus (taxid:10116)]

 Score = 209 (78.6 bits), Expect = 5.3e-17, P = 5.3e-17
 Identities = 43/117 (36%), Positives = 70/117 (59%)

Query:    43 VQKTLGLLHQLYLTVSSFNAASQLPLLQRLNSLVSELDNMVKLSEKCN-IQVPTEVLNLI 101
             ++K +  + QL + VS F  +SQ  L Q+LN +V+ L ++ K  ++ + I VP EV   I
Sbjct:    12 LEKFVENIRQLGIIVSDFQPSSQAGLSQKLNFIVTGLQDIDKCRQQLHDITVPLEVFEYI 71

Query:   102 DDGKNPDEFTRDVINSCIAKNQVTKGKTDAFKSLRKHLLDELEQTFPDEVEAYREIR 158
             D G+NP  +T++ +   +AKN+  KGK D  K  +  L+ EL + FP+++  YR IR
Sbjct:    72 DQGRNPQLYTKECLERALAKNEQVKGKIDTMKKFKSLLIQELSKVFPEDMAKYRSIR 128

GO:0001104 "RNA polymerase II transcription cofactor activity" evidence=IEA

GO:0016592 "mediator complex" evidence=IEA

GO:0019827 "stem cell maintenance" evidence=IEA

GO:0045944 "positive regulation of transcription from RNA polymerase II promoter" evidence=IEA

UNIPROTKB|Q3ZCF2 MED10 "Mediator of RNA polymerase II transcription subunit 10" [Bos taurus (taxid:9913)]

 Score = 208 (78.3 bits), Expect = 6.7e-17, P = 6.7e-17
 Identities = 43/117 (36%), Positives = 70/117 (59%)

Query:    43 VQKTLGLLHQLYLTVSSFNAASQLPLLQRLNSLVSELDNMVKLSEKCN-IQVPTEVLNLI 101
             ++K +  + QL + VS F  +SQ  L Q+LN +V+ L ++ K  ++ + I VP EV   I
Sbjct:    12 LEKFVENIRQLGIIVSDFQPSSQAGLNQKLNFIVTGLQDIDKCRQQLHDITVPLEVFEYI 71

Query:   102 DDGKNPDEFTRDVINSCIAKNQVTKGKTDAFKSLRKHLLDELEQTFPDEVEAYREIR 158
             D G+NP  +T++ +   +AKN+  KGK D  K  +  L+ EL + FP+++  YR IR
Sbjct:    72 DQGRNPQLYTKECLERALAKNEQVKGKIDTMKKFKSLLIQELSKVFPEDMAKYRSIR 128

GO:0045944 "positive regulation of transcription from RNA polymerase II promoter" evidence=IEA

GO:0019827 "stem cell maintenance" evidence=IEA

GO:0016592 "mediator complex" evidence=IEA

GO:0001104 "RNA polymerase II transcription cofactor activity" evidence=IEA

UNIPROTKB|Q9BTT4 MED10 "Mediator of RNA polymerase II transcription subunit 10" [Homo sapiens (taxid:9606)]

 Score = 208 (78.3 bits), Expect = 6.7e-17, P = 6.7e-17
 Identities = 43/117 (36%), Positives = 70/117 (59%)

Query:    43 VQKTLGLLHQLYLTVSSFNAASQLPLLQRLNSLVSELDNMVKLSEKCN-IQVPTEVLNLI 101
             ++K +  + QL + VS F  +SQ  L Q+LN +V+ L ++ K  ++ + I VP EV   I
Sbjct:    12 LEKFVENIRQLGIIVSDFQPSSQAGLNQKLNFIVTGLQDIDKCRQQLHDITVPLEVFEYI 71

Query:   102 DDGKNPDEFTRDVINSCIAKNQVTKGKTDAFKSLRKHLLDELEQTFPDEVEAYREIR 158
             D G+NP  +T++ +   +AKN+  KGK D  K  +  L+ EL + FP+++  YR IR
Sbjct:    72 DQGRNPQLYTKECLERALAKNEQVKGKIDTMKKFKSLLIQELSKVFPEDMAKYRSIR 128

GO:0001104 "RNA polymerase II transcription cofactor activity" evidence=IEA

GO:0016592 "mediator complex" evidence=IEA

GO:0019827 "stem cell maintenance" evidence=IEA

GO:0045944 "positive regulation of transcription from RNA polymerase II promoter" evidence=IEA

GO:0005654 "nucleoplasm" evidence=TAS

GO:0006367 "transcription initiation from RNA polymerase II promoter" evidence=TAS

GO:0010467 "gene expression" evidence=TAS

UNIPROTKB|F1S049 MED10 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 208 (78.3 bits), Expect = 6.7e-17, P = 6.7e-17
 Identities = 43/117 (36%), Positives = 70/117 (59%)

Query:    43 VQKTLGLLHQLYLTVSSFNAASQLPLLQRLNSLVSELDNMVKLSEKCN-IQVPTEVLNLI 101
             ++K +  + QL + VS F  +SQ  L Q+LN +V+ L ++ K  ++ + I VP EV   I
Sbjct:    12 LEKFVENIRQLGIIVSDFQPSSQAGLNQKLNFIVTGLQDIDKCRQQLHDITVPLEVFEYI 71

Query:   102 DDGKNPDEFTRDVINSCIAKNQVTKGKTDAFKSLRKHLLDELEQTFPDEVEAYREIR 158
             D G+NP  +T++ +   +AKN+  KGK D  K  +  L+ EL + FP+++  YR IR
Sbjct:    72 DQGRNPQLYTKECLERALAKNEQVKGKIDTMKKFKSLLIQELSKVFPEDMAKYRSIR 128

GO:0045944 "positive regulation of transcription from RNA polymerase II promoter" evidence=IEA

GO:0019827 "stem cell maintenance" evidence=IEA

GO:0016592 "mediator complex" evidence=IEA

GO:0001104 "RNA polymerase II transcription cofactor activity" evidence=IEA

UNIPROTKB|E1BVD0 MED10 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 204 (76.9 bits), Expect = 1.8e-16, P = 1.8e-16
 Identities = 42/117 (35%), Positives = 70/117 (59%)

Query:    43 VQKTLGLLHQLYLTVSSFNAASQLPLLQRLNSLVSELDNMVKLSEKCN-IQVPTEVLNLI 101
             ++K +  + QL + VS F  +SQ  L Q+LN +V+ L ++ K  ++ + I VP EV   I
Sbjct:    12 LEKFVENIRQLGIIVSDFQPSSQAGLNQKLNFMVTGLQDIDKCRQQLHDISVPLEVFEYI 71

Query:   102 DDGKNPDEFTRDVINSCIAKNQVTKGKTDAFKSLRKHLLDELEQTFPDEVEAYREIR 158
             D G+NP  +T++ +   +AKN+  KGK D  K  +  L+ EL + FP+++  Y+ IR
Sbjct:    72 DQGRNPQLYTKECLERALAKNEQVKGKIDTMKKFKSLLIQELTKVFPEDMAKYKAIR 128

GO:0001104 "RNA polymerase II transcription cofactor activity" evidence=IEA

GO:0016592 "mediator complex" evidence=IEA

GO:0019827 "stem cell maintenance" evidence=IEA

GO:0045944 "positive regulation of transcription from RNA polymerase II promoter" evidence=IEA

FB|FBgn0036581 MED10 "Mediator complex subunit 10" [Drosophila melanogaster (taxid:7227)]

 Score = 199 (75.1 bits), Expect = 6.0e-16, P = 6.0e-16
 Identities = 48/132 (36%), Positives = 75/132 (56%)

Query:    32 PKQNLNQVINSVQKTLGLLHQLYLTVSSFNAASQLPLLQRLNSLVSELDNMVKL-SEKCN 90
             P +NL      ++  +  + Q+ + VS F    Q  L Q++NSLV+ L  + KL S+  +
Sbjct:     4 PLENLE---TQLEMFIENVRQIRIIVSDFQPQGQNVLNQKINSLVTGLQEIDKLRSQVQD 60

Query:    91 IQVPTEVL-NLIDDGKNPDEFTRDVINSCIAKNQVTKGKTDAFKSLRKHLLDELEQTFPD 149
             + VP EV  + ID  KNP  +T+D +   +AKN+  KGK +  K  + +LL EL +TFP+
Sbjct:    61 VYVPFEVFFDYIDQDKNPQLYTKDCVEKALAKNEEVKGKIEGLKKFKTNLLLELYKTFPN 120

Query:   150 EVEAYREIRANS 161
             E+  YR  R +S
Sbjct:   121 EMNNYRAYRKDS 132

GO:0003713 "transcription coactivator activity" evidence=NAS

GO:0016592 "mediator complex" evidence=ISS;IDA

GO:0006367 "transcription initiation from RNA polymerase II promoter" evidence=ISS

GO:0001104 "RNA polymerase II transcription cofactor activity" evidence=ISS;IMP

GO:0006357 "regulation of transcription from RNA polymerase II promoter" evidence=IEA

GO:0005515 "protein binding" evidence=IPI

GO:0006366 "transcription from RNA polymerase II promoter" evidence=IMP

ZFIN|ZDB-GENE-070117-2423 med10 "mediator of RNA polymerase II transcription, subunit 10 homolog" [Danio rerio (taxid:7955)]

 Score = 196 (74.1 bits), Expect = 1.3e-15, P = 1.3e-15
 Identities = 40/119 (33%), Positives = 69/119 (57%)

Query:    43 VQKTLGLLHQLYLTVSSFNAASQLPLLQRLNSLVSELDNMVKLSEKCN-IQVPTEVLNLI 101
             ++K +  + QL + VS F  +SQ  L Q+LN +++ L ++ K  ++ + I VP EV   I
Sbjct:    12 LEKFVENIRQLGIIVSDFQPSSQTGLNQKLNFMITGLQDIEKCRQQLHDINVPLEVFEYI 71

Query:   102 DDGKNPDEFTRDVINSCIAKNQVTKGKTDAFKSLRKHLLDELEQTFPDEVEAYREIRAN 160
             D G+NP  +T++ +   +AKN+  KGK D     +  L+ EL + FP+E+  Y+ I  +
Sbjct:    72 DQGRNPQLYTKECLERALAKNEQVKGKIDTLTKFKSLLISELGKVFPEEMAKYKAIHGD 130

GO:0016592 "mediator complex" evidence=IEA

GO:0006357 "regulation of transcription from RNA polymerase II promoter" evidence=IEA

GO:0001104 "RNA polymerase II transcription cofactor activity" evidence=IEA

GO:0006351 "transcription, DNA-dependent" evidence=IEA

GO:0016055 "Wnt receptor signaling pathway" evidence=IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0007275 "multicellular organismal development" evidence=IEA

GO:0007507 "heart development" evidence=IMP

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Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
F4HPA7	MD10B_ARATH	No assigned EC number	0.7564	0.7264	0.8148	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

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Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

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Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	212
pfam09748	120	pfam09748, Med10, Transcription factor subunit Med	2e-46

>gnl|CDD|150423 pfam09748, Med10, Transcription factor subunit Med10 of Mediator complex

 Score =  149 bits (378), Expect = 2e-46
 Identities = 47/120 (39%), Positives = 74/120 (61%), Gaps = 1/120 (0%)

Query: 39  VINSVQKTLGLLHQLYLTVSSFNAASQLPLLQRLNSLVSELDNMVKLSEK-CNIQVPTEV 97
           +   +++ +  L +L + VS F   SQ  L Q+LN+LV  L ++ KL+++  ++ +P EV
Sbjct: 1   LEEQLEEIIESLRELGVIVSDFQPQSQDALNQKLNTLVRGLQSLDKLAQQLSDVNIPLEV 60

Query: 98  LNLIDDGKNPDEFTRDVINSCIAKNQVTKGKTDAFKSLRKHLLDELEQTFPDEVEAYREI 157
           +  IDDG+NPD +TR+ +   + KNQ  KGK  AFK  R  L +EL + FP+ V  YR+I
Sbjct: 61  IQYIDDGRNPDLYTREFVELVLRKNQYVKGKMHAFKKFRDVLAEELSEAFPELVAEYRDI 120

Med10 is one of the protein subunits of the Mediator complex, tethered to Rgr1 protein. The Mediator complex is required for the transcription of most RNA polymerase II (Pol II)-transcribed genes. Med10 specifically mediates basal-level HIS4 transcription via Gcn4, and, additionally, there is a putative requirement for Med10 in Bas2-mediated transcription. Med10 is part of the middle region of Mediator. Length = 120

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	212
KOG3046	147	consensus Transcription factor, subunit of SRB sub	100.0
PF09748	128	Med10: Transcription factor subunit Med10 of Media	100.0
PF04129	508	Vps52: Vps52 / Sac2 family ; InterPro: IPR007258 V	82.2

>KOG3046 consensus Transcription factor, subunit of SRB subcomplex of RNA polymerase II [Transcription]

Probab=100.00  E-value=3.1e-47  Score=311.50  Aligned_cols=141  Identities=50%  Similarity=0.733  Sum_probs=137.1

Q ss_pred             ccCChhHHHHHHHHHHHHHHHHHHHhhhhccccCCCchhhHHHHHHHHHHHHHhHHhhhhhCC-CCCchHHHHhhhcCCC
Q 028220           28 AADDPKQNLNQVINSVQKTLGLLHQLYLTVSSFNAASQLPLLQRLNSLVSELDNMVKLSEKCN-IQVPTEVLNLIDDGKN  106 (212)
Q Consensus        28 ~~~~~~~qL~~~ieSLe~~L~~L~Ql~i~VsdFq~~Sq~~L~qKIn~LV~~L~~L~~~a~~~d-i~IPlEVl~yID~GRN  106 (212)
                      ..++..++|.++.++++++++.+||+|++|++|+|.||+.|+++|++||..|++|++++++++ +.||+||++|||||||
T Consensus         6 ~~~q~~ekl~~l~~~le~~~e~~~~Lgl~vs~F~~tsq~~L~qrl~tLv~~L~~l~~~s~k~n~i~IPleVl~yIddGrN   85 (147)
T KOG3046|consen    6 NNDQMQEKLAQLENSLEKFLENFRQLGLIVSNFQPTSQDALNQRLNTLVRGLQDLDKLSSKLNDIQIPLEVLEYIDDGRN   85 (147)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHhHhhhcCCCCcHHHHHHHHHHHHHHhhhhHHHHHhhccccCcHHHHHHHhcCCC
Confidence            567888999999999999999999999999999999999999999999999999999999987 9999999999999999


Q ss_pred             ccHHHHHHHHHHHHHhhHhhccHHHHHHHHHHHHHHHHhhChhhHHHHHHHHhcchhhhHHH
Q 028220          107 PDEFTRDVINSCIAKNQVTKGKTDAFKSLRKHLLDELEQTFPDEVEAYREIRANSAAVSNAI  168 (212)
Q Consensus       107 PDiYTREfVE~~~~~NQ~~kGKi~a~~~fR~~L~eeL~~~FPel~~~yr~ir~~~~a~~~~~  168 (212)
                      ||+|||+|+|+|+++||++|||++||++||++|++||+++|||+++.||.||+.++++|+++
T Consensus        86 Pd~ytke~le~~~~kNq~vkGK~~~~K~fr~~l~eEl~q~fPe~~~~yr~Ir~e~~~~s~vs  147 (147)
T KOG3046|consen   86 PDLYTKEFLEKCLAKNQYVKGKIDAFKKFRKHLAEELSQEFPELVDPYRSIRAEDAPESKVS  147 (147)
T ss_pred             ccHHHHHHHHHHHHhhhHHhhhHHHHHHHHHHHHHHHHHHChHHHHHHHHHHhccCcccccC
Confidence            99999999999999999999999999999999999999999999999999999999999874

>PF09748 Med10: Transcription factor subunit Med10 of Mediator complex; InterPro: IPR019145 The Mediator complex is a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes

Probab=100.00  E-value=2.6e-42  Score=276.99  Aligned_cols=116  Identities=41%  Similarity=0.640  Sum_probs=111.0

Q ss_pred             HHHHHHHHHHHhhhhccccC-CCchhhHHHHHHHHHHHHHhHHhhhhh--------CCCCCchHHHHhhhcCCCccHHHH
Q 028220           42 SVQKTLGLLHQLYLTVSSFN-AASQLPLLQRLNSLVSELDNMVKLSEK--------CNIQVPTEVLNLIDDGKNPDEFTR  112 (212)
Q Consensus        42 SLe~~L~~L~Ql~i~VsdFq-~~Sq~~L~qKIn~LV~~L~~L~~~a~~--------~di~IPlEVl~yID~GRNPDiYTR  112 (212)
                      +|++++++|+|++++|++|+ ++|+++|.+||+.|+++|++|++++..        ++++||+|||+|||+|||||+|||
T Consensus         4 ~l~~~i~~l~el~~~v~d~~~~~s~~~L~~ki~~lv~~L~~l~~~~~~~~~~~~~~~~~~IP~evl~yID~GrNPDiyTr   83 (128)
T PF09748_consen    4 QLEDVIQSLYELGVIVSDFQGPPSQEALNQKINQLVTSLQELDKLAQQTNDPDSPLQDIQIPLEVLEYIDDGRNPDIYTR   83 (128)
T ss_pred             HHHHHHHHHHHHHHHHHcCCCCCcHHHHHHHHHHHHHHHHHHHHHhcccCCCCcccccCCCCHHHHHHHhCCCCchHHHH
Confidence            45566778999999999999 999999999999999999999999987        789999999999999999999999


Q ss_pred             HHHHHHHHHhhHhhccHHHHHHHHHHHHHHHHhhChhhHHHHHHH
Q 028220          113 DVINSCIAKNQVTKGKTDAFKSLRKHLLDELEQTFPDEVEAYREI  157 (212)
Q Consensus       113 EfVE~~~~~NQ~~kGKi~a~~~fR~~L~eeL~~~FPel~~~yr~i  157 (212)
                      ||||+|+++||++|||++||++||++|+++|+++|||+.+.|++|
T Consensus        84 e~vE~~~~~Nq~~kGK~~a~~~fr~~L~~el~~~fPe~~~~~~~i  128 (128)
T PF09748_consen   84 EFVELVRRENQYVKGKMEAFKSFRDVLAEELASAFPELKEDVRRI  128 (128)
T ss_pred             HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHChHHHHHHhhC
Confidence            999999999999999999999999999999999999999999975

Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. The Mediator complex, having a compact conformation in its free form, is recruited to promoters by direct interactions with regulatory proteins and serves for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. On recruitment the Mediator complex unfolds to an extended conformation and partially surrounds RNA polymerase II, specifically interacting with the unphosphorylated form of the C-terminal domain (CTD) of RNA polymerase II. The Mediator complex dissociates from the RNA polymerase II holoenzyme and stays at the promoter when transcriptional elongation begins. The Mediator complex is composed of at least 31 subunits: MED1, MED4, MED6, MED7, MED8, MED9, MED10, MED11, MED12, MED13, MED13L, MED14, MED15, MED16, MED17, MED18, MED19, MED20, MED21, MED22, MED23, MED24, MED25, MED26, MED27, MED29, MED30, MED31, CCNC, CDK8 and CDC2L6/CDK11. The subunits form at least three structurally distinct submodules. The head and the middle modules interact directly with RNA polymerase II, whereas the elongated tail module interacts with gene-specific regulatory proteins. Mediator containing the CDK8 module is less active than Mediator lacking this module in supporting transcriptional activation. The head module contains: MED6, MED8, MED11, SRB4/MED17, SRB5/MED18, ROX3/MED19, SRB2/MED20 and SRB6/MED22. The middle module contains: MED1, MED4, NUT1/MED5, MED7, CSE2/MED9, NUT2/MED10, SRB7/MED21 and SOH1/MED31. CSE2/MED9 interacts directly with MED4. The tail module contains: MED2, PGD1/MED3, RGR1/MED14, GAL11/MED15 and SIN4/MED16. The CDK8 module contains: MED12, MED13, CCNC and CDK8. Individual preparations of the Mediator complex lacking one or more distinct subunits have been variously termed ARC, CRSP, DRIP, PC2, SMCC and TRAP. Med10 is one of the protein subunits of the Mediator complex, tethered to Med14 (Rgr1) protein. Med10 specifically mediates basal-level HIS4 transcription via Gcn4. In addition, there is a putative requirement for Med10 in Bas2-mediated transcription []. ; GO: 0001104 RNA polymerase II transcription cofactor activity, 0006357 regulation of transcription from RNA polymerase II promoter, 0016592 mediator complex

>PF04129 Vps52: Vps52 / Sac2 family ; InterPro: IPR007258 Vps52 complexes with Vps53 and Vps54 to form a multi-subunit complex involved in regulating membrane trafficking events []

Probab=82.20  E-value=50  Score=32.24  Aligned_cols=72  Identities=15%  Similarity=0.289  Sum_probs=41.6

Q ss_pred             CCCCchHHHHhhhcCCCccHHHHHHHHHHHHHhhHhh----ccHHHHHHHHHHHH----HHHHhhChhhHHHHHHHHhcc
Q 028220           90 NIQVPTEVLNLIDDGKNPDEFTRDVINSCIAKNQVTK----GKTDAFKSLRKHLL----DELEQTFPDEVEAYREIRANS  161 (212)
Q Consensus        90 di~IPlEVl~yID~GRNPDiYTREfVE~~~~~NQ~~k----GKi~a~~~fR~~L~----eeL~~~FPel~~~yr~ir~~~  161 (212)
                      ++-||+++++-|-+|.==+-|-++.++...+.....+    ....|.+.++..|.    ..+++...=+......+|...
T Consensus        81 ~i~ipP~lI~~I~~~~v~e~~~~~~~~~~~k~~~~~~~~~~~~~~a~~d~~~~Le~L~~ka~~rir~fl~~kI~~lr~~~  160 (508)
T PF04129_consen   81 DIVIPPDLIRSICEGPVNEQYIEELLELLKKKIFFSKDQSFKDSKAIKDVKPELEKLKNKAVERIRDFLLKKIKSLRKPK  160 (508)
T ss_pred             HHcCCHHHHHhHhcCCCCHHHHHHHHHHHHHHHHHHhhcccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCC
Confidence            6789999999998884333566666665555444332    33445555554443    233333344555666677543

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Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	212
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	1e-04

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 41.4 bits (96), Expect = 1e-04
 Identities = 38/245 (15%), Positives = 71/245 (28%), Gaps = 82/245 (33%)

Query: 21  ANDTTTVAADDPKQNLNQVINSVQKTLGLLHQLYLTVSSFN----AASQLPLLQRLNSLV 76
           A  TT ++ D     L        +   LL + YL     +      +  P      S++
Sbjct: 283 AATTTHISLDHHSMTLTP-----DEVKSLLLK-YLDCRPQDLPREVLTTNPRRL---SII 333

Query: 77  SEL----------------DNMVKLSEKC---------------------NIQVPTEVLN 99
           +E                 D +  + E                       +  +PT +L+
Sbjct: 334 AESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLS 393

Query: 100 LIDDGKNPDEFTRDVINSCIAKNQVTKGKTDAFKSLRKH-LLDELEQTFPDE-------V 151
           LI       +    V+N     + V K   ++  S+    +  EL+    +E       V
Sbjct: 394 LIWFDVIKSD-VMVVVNKLHKYSLVEKQPKESTISI--PSIYLELKVKLENEYALHRSIV 450

Query: 152 EAYREIRA------NSAAVSNAILSE-AHHVEWMLSICCQ---FFMFLILYILLSVLYDI 201
           + Y   +           +     S   HH    L          +F ++++      D 
Sbjct: 451 DHYNIPKTFDSDDLIPPYLDQYFYSHIGHH----LKNIEHPERMTLFRMVFL------DF 500

Query: 202 R-VEQ 205
           R +EQ
Sbjct: 501 RFLEQ 505

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	212
1vcs_A	102	Vesicle transport through interaction with T- snar	85.53

>1vcs_A Vesicle transport through interaction with T- snares homolog 1A; HABC domain, VTI1, UP and DOWN three helix bundle, LEFT-handed twist; NMR {Mus musculus} SCOP: a.47.2.1

Probab=85.53  E-value=4.1  Score=30.49  Aligned_cols=57  Identities=23%  Similarity=0.283  Sum_probs=51.0

Q ss_pred             ccCChhHHHHHHHHHHHHHHHHHHHhhhhccccCCCchhhHHHHHHHHHHHHHhHHh
Q 028220           28 AADDPKQNLNQVINSVQKTLGLLHQLYLTVSSFNAASQLPLLQRLNSLVSELDNMVK   84 (212)
Q Consensus        28 ~~~~~~~qL~~~ieSLe~~L~~L~Ql~i~VsdFq~~Sq~~L~qKIn~LV~~L~~L~~   84 (212)
                      ..+..+..+.++=..|++.-+.|.||.+-|.+..++....+..||..+-+.|.++.+
T Consensus        32 ~geerk~~i~~ie~~l~EA~ell~qMelE~r~~p~~~R~~~~~klr~Yk~dL~~lk~   88 (102)
T 1vcs_A           32 PPDEKKQMVANVEKQLEEARELLEQMDLEVREIPPQSRGMYSNRMRSYKQEMGKLET   88 (102)
T ss_dssp             CTTTHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCTTTHHHHHHHHHHHHHHHHHHHH
T ss_pred             CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHhHHHHHHHHHHHHHHHHHHHH
Confidence            457788888888889999888999999999999888899999999999999998875

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Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	212
d1vcsa1	89	Vesicle transport v-SNARE protein Vti1-like 2 {Mou	87.35

>d1vcsa1 a.47.2.1 (A:8-96) Vesicle transport v-SNARE protein Vti1-like 2 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: STAT-like
superfamily: t-snare proteins
family: t-snare proteins
domain: Vesicle transport v-SNARE protein Vti1-like 2
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=87.35  E-value=1.4  Score=30.78  Aligned_cols=57  Identities=23%  Similarity=0.283  Sum_probs=52.0

Q ss_pred             ccCChhHHHHHHHHHHHHHHHHHHHhhhhccccCCCchhhHHHHHHHHHHHHHhHHh
Q 028220           28 AADDPKQNLNQVINSVQKTLGLLHQLYLTVSSFNAASQLPLLQRLNSLVSELDNMVK   84 (212)
Q Consensus        28 ~~~~~~~qL~~~ieSLe~~L~~L~Ql~i~VsdFq~~Sq~~L~qKIn~LV~~L~~L~~   84 (212)
                      ..++.+..|.++=.+|++.-+.|.||.+-|.+..++....++.||..+=+.|.++.+
T Consensus        25 ~geerk~~l~~ie~~leEA~ell~qMelEvr~~p~s~R~~~~~klr~Yk~dl~~lk~   81 (89)
T d1vcsa1          25 PPDEKKQMVANVEKQLEEARELLEQMDLEVREIPPQSRGMYSNRMRSYKQEMGKLET   81 (89)
T ss_dssp             CTTTHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCTTTHHHHHHHHHHHHHHHHHHHH
T ss_pred             CchHHHHHHHHHHHhHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence            557888899999999999888999999999999999999999999999999998875