Citrus Sinensis ID: 028221

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210--
Protein Sequence
MGRRQMLNPNSSAGTLNTVTPCAACKLLRRRCAEECPFSPYFSPHEPQKFAAVHKVFGASNVSKLLSEVPDSQRADAANSLVFEANLRLRDPVYGCLGAISSLQQQVQSLQAELNAMRTEIMKYKYREAATASTIISSSNPLFSSGVVSIAGGSSAPSLSTSQPPPHPPPPPPPSIVISSSSSSSVSSLYTPPMRTTGCSSISSDSIVPYFD
Secondary Structure (PSIPRED)
ccccccccccccccccccccccHHHHHHHcccccccccccccccccHHHHHHHHHHHcccHHHHHHccccccHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
ccccccccccccccccccccHHHHHHHHHHHcccccccccccccccHHHHHHHHHHHcHHHHHHHHHHccHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEcccccccccc
Coil and Loop (DISEMBL)
mgrrqmlnpnssagtlntvtpcAACKLLRRRcaeecpfspyfsphepqkFAAVHKVFGASNVSKLlsevpdsqradAANSLVFEAnlrlrdpvygcLGAISSLQQQVQSLQAELNAMRTEIMKYKYREAATastiisssnplfssgvvsiaggssapslstsqppphpppppppsivisssssssvsslytppmrttgcssissdsivpyfd
Flexible Loop (DISEMBL)
mgrrqmlnpnssagtlntvTPCAACKLLRRRCAEECPFSPYFSPHEPQKFAAVHKVFGASNVSKLLSEVPDSQRADAANSLVFEANLRLRDPVYGCLGAISSLQQQVQSLQAELNAMRTEIMKYKYREAATASTIISSSNPLFSSGVVSIAGGSSAPSLSTSQPPPHPPPPPPPSIVISSSSSSSVSSLYtppmrttgcssissdsivpyfd
Low Complexity Region (SEG)
MGRRQMLNPNSSAGTLNTVTPCAACKLLRRRCAEECPFSPYFSPHEPQKFAAVHKVFGASNVSKLLSEVPDSQRADAANSLVFEANLRLRDPVYGCLGAIsslqqqvqslqAELNAMRTEIMKYKYREaatastiisssNPLFssgvvsiaggssapslstsqppphpppppppsivisssssssvsslytppMRTTGCSSISSDSIVPYFD
Disordered region (IsUnstruct)
***************LNTVTPCAACKLLRRRCAEECPFSPYFSPHEPQKFAAVHKVFGASNVSKL************ANSLVFEANLRLRDPVYGCLGAISSLQQQVQSLQAELNAMRTEIMKYKYREAATASTII****************************************************************************
Disordered Region (DISOPRED)
**********************AACKLLRRRCAEECPFSPYFSPHEPQKFAAVHKVFGASNVSKLLSEVPDSQRADAANSLVFEANLRLRDPVYGCLGAISSLQQQVQSLQAELNAMRTEIMK***************************************************************************************F*
Disordered Region (DISEMBL)
*********NSSAGTLNTVTPCAACKLLRRRCAEECPFSPYFSPHEPQKFAAVHKVFGASNVSKLLSEVPDSQRADAANSLVFEANLRLRDPVYGCLGAISSLQQQVQSLQAELNAMRTEIMKYKYREAATASTIISSSNPLFSSGVVSIA*********************PPSIV****************MRTTGCSSISSDSIVPYFD
Disordered Region (DISPRO)
******************VTPCAACKLLRRRCAEECPFSPYFSPHEPQKFAAVHKVFGASNVSKLLSEVPDSQRADAANSLVFEANLRLRDPVYGCLGAISSLQQQVQSLQAELNAMRTEIMKYKYREAATAS*****************************************************************CSSI*SD*IVPYFD
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
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Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MGRRQMLNPNSSAGTLNTVTPCAACKLLRRRCAEECPFSPYFSPHEPQKFAAVHKVFGASNVSKLLSEVPDSQRADAANSLVFEANLRLRDPVYGCLGAxxxxxxxxxxxxxxxxxxxxxxxxxxxxEAATASTIISSSNPLFSSGVVSIAGGSSAPSLSTSQPPPHPPPPPPPSIVISSSSSSSVSSLYTPPMRTTGCSSISSDSIVPYFD
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	212	2.2.26 [Sep-21-2011]
Q9AT61	268	LOB domain-containing pro	yes	no	0.594	0.470	0.761	2e-55
Q8L5T5	224	LOB domain-containing pro	no	no	0.674	0.638	0.730	5e-51
Q8LBW3	193	LOB domain-containing pro	no	no	0.485	0.533	0.689	8e-38
Q9SHE9	172	LOB domain-containing pro	no	no	0.518	0.639	0.636	2e-35
Q8L8Q3	159	LOB domain-containing pro	no	no	0.504	0.672	0.616	8e-35
Q9FML4	186	Protein LATERAL ORGAN BOU	no	no	0.537	0.612	0.578	3e-34
Q9LQR0	190	LOB domain-containing pro	no	no	0.556	0.621	0.533	3e-34
Q9SK08	232	LOB domain-containing pro	no	no	0.556	0.508	0.525	4e-34
A1YKY7	269	Protein IAL1 OS=Zea mays	N/A	no	0.528	0.416	0.553	6e-34
Q32SG3	260	LOB domain-containing pro	N/A	no	0.514	0.419	0.577	6e-34

>sp|Q9AT61|LBD13_ARATH LOB domain-containing protein 13 OS=Arabidopsis thaliana GN=LBD13 PE=2 SV=2

 Score =  215 bits (548), Expect = 2e-55,   Method: Compositional matrix adjust.
 Identities = 96/126 (76%), Positives = 114/126 (90%)

Query: 15  TLNTVTPCAACKLLRRRCAEECPFSPYFSPHEPQKFAAVHKVFGASNVSKLLSEVPDSQR 74
           TLNTVTPCAACKLLRRRCAEECPFSPYFSPHEP KFAAVHKVFGASNVSK+L EV +SQR
Sbjct: 46  TLNTVTPCAACKLLRRRCAEECPFSPYFSPHEPHKFAAVHKVFGASNVSKMLLEVGESQR 105

Query: 75  ADAANSLVFEANLRLRDPVYGCLGAISSLQQQVQSLQAELNAMRTEIMKYKYREAATAST 134
            DAANSLV+EANLRLRDP+YGC+GAIS+LQ  +QSLQ+EL  +RTEI+++KY+EA T ++
Sbjct: 106 GDAANSLVYEANLRLRDPIYGCMGAISALQHHIQSLQSELTTVRTEILRHKYQEATTITS 165

Query: 135 IISSSN 140
           + ++ N
Sbjct: 166 LQNNFN 171

Arabidopsis thaliana (taxid: 3702)

>sp|Q8L5T5|LBD15_ARATH LOB domain-containing protein 15 OS=Arabidopsis thaliana GN=LBD15 PE=2 SV=2

 Score =  200 bits (509), Expect = 5e-51,   Method: Compositional matrix adjust.
 Identities = 111/152 (73%), Positives = 128/152 (84%), Gaps = 9/152 (5%)

Query: 3   RRQMLNPNSSAGTLNTVTPCAACKLLRRRCAEECPFSPYFSPHEPQKFAAVHKVFGASNV 62
           RR M  P    GTLNT+TPCAACKLLRRRCA+ECPFSPYFSPHEP KFA+VHKVFGASNV
Sbjct: 30  RRPMSGP---PGTLNTITPCAACKLLRRRCAQECPFSPYFSPHEPHKFASVHKVFGASNV 86

Query: 63  SKLLSEVPDSQRADAANSLVFEANLRLRDPVYGCLGAISSLQQQVQSLQAELNAMRTEIM 122
           SK+L EVP+SQRADAANSLV+EAN+RLRDPVYGC+GAIS+LQQQVQ+LQAEL A+R+EI+
Sbjct: 87  SKMLMEVPESQRADAANSLVYEANVRLRDPVYGCMGAISALQQQVQALQAELTAVRSEIL 146

Query: 123 KYKYREAATASTIISSSNP----LFSSGVVSI 150
           KYK REA   +T+I  SN       +SG VS+
Sbjct: 147 KYKQREA--VATLIVPSNSQVAGFHNSGGVSV 176

Arabidopsis thaliana (taxid: 3702)

>sp|Q8LBW3|LBD12_ARATH LOB domain-containing protein 12 OS=Arabidopsis thaliana GN=LBD12 PE=2 SV=2

 Score =  156 bits (395), Expect = 8e-38,   Method: Compositional matrix adjust.
 Identities = 71/103 (68%), Positives = 84/103 (81%)

Query: 20  TPCAACKLLRRRCAEECPFSPYFSPHEPQKFAAVHKVFGASNVSKLLSEVPDSQRADAAN 79
           +PCA+CKLLRRRCA++C F+PYF P +P KFA VHKVFGASNVSK+L E+P  QRADA N
Sbjct: 7   SPCASCKLLRRRCAKDCIFAPYFPPDDPHKFAIVHKVFGASNVSKMLQELPVHQRADAVN 66

Query: 80  SLVFEANLRLRDPVYGCLGAISSLQQQVQSLQAELNAMRTEIM 122
           SLVFEAN R+RDPVYGC+GAIS LQ QV  LQ +L   + EI+
Sbjct: 67  SLVFEANARVRDPVYGCVGAISYLQNQVSQLQMQLAVAQAEIL 109

Arabidopsis thaliana (taxid: 3702)

>sp|Q9SHE9|LBD4_ARATH LOB domain-containing protein 4 OS=Arabidopsis thaliana GN=LBD4 PE=2 SV=1

 Score =  148 bits (374), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 70/110 (63%), Positives = 90/110 (81%)

Query: 20  TPCAACKLLRRRCAEECPFSPYFSPHEPQKFAAVHKVFGASNVSKLLSEVPDSQRADAAN 79
           +PCAACKLLRRRCA++C FSPYF   EPQKFA VH+VFGASNV+K+L E+P  QR DA +
Sbjct: 12  SPCAACKLLRRRCAQDCVFSPYFPADEPQKFANVHRVFGASNVNKMLQELPIHQRGDAVS 71

Query: 80  SLVFEANLRLRDPVYGCLGAISSLQQQVQSLQAELNAMRTEIMKYKYREA 129
           S+V+EAN R+RDPVYGC+GAISSLQQQ+  LQA+L   + E++  + R++
Sbjct: 72  SMVYEANARVRDPVYGCVGAISSLQQQIDVLQAQLALAQAEVVHLRVRQS 121

Arabidopsis thaliana (taxid: 3702)

>sp|Q8L8Q3|LBD25_ARATH LOB domain-containing protein 25 OS=Arabidopsis thaliana GN=LBD25 PE=2 SV=3

 Score =  146 bits (369), Expect = 8e-35,   Method: Compositional matrix adjust.
 Identities = 66/107 (61%), Positives = 80/107 (74%)

Query: 18  TVTPCAACKLLRRRCAEECPFSPYFSPHEPQKFAAVHKVFGASNVSKLLSEVPDSQRADA 77
           T +PCAACK LRR+C  +C F+PYF P EP KFA VH++FGASNVSK+L EV   QR DA
Sbjct: 36  TNSPCAACKFLRRKCTSDCVFAPYFPPEEPTKFANVHRIFGASNVSKILHEVAPHQREDA 95

Query: 78  ANSLVFEANLRLRDPVYGCLGAISSLQQQVQSLQAELNAMRTEIMKY 124
            NSL +EA  RL+DPVYGC+GAIS LQ+QV  LQ EL     ++M+Y
Sbjct: 96  VNSLAYEAEARLKDPVYGCVGAISVLQRQVLRLQRELEETNADLMRY 142

Arabidopsis thaliana (taxid: 3702)

>sp|Q9FML4|LOB_ARATH Protein LATERAL ORGAN BOUNDARIES OS=Arabidopsis thaliana GN=LOB PE=2 SV=1

 Score =  145 bits (365), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 66/114 (57%), Positives = 82/114 (71%)

Query: 20  TPCAACKLLRRRCAEECPFSPYFSPHEPQKFAAVHKVFGASNVSKLLSEVPDSQRADAAN 79
           +PCAACK LRR+C   C F+PYF P EP KFA VHK+FGASNV+KLL+E+   QR DA N
Sbjct: 10  SPCAACKFLRRKCMPGCIFAPYFPPEEPHKFANVHKIFGASNVTKLLNELLPHQREDAVN 69

Query: 80  SLVFEANLRLRDPVYGCLGAISSLQQQVQSLQAELNAMRTEIMKYKYREAATAS 133
           SL +EA  R+RDPVYGC+GAIS LQ+QV  LQ EL+A   ++  Y    +A  +
Sbjct: 70  SLAYEAEARVRDPVYGCVGAISYLQRQVHRLQKELDAANADLAHYGLSTSAAGA 123

Not known; ectopic expression of LOB leads to alterations in the size and shape of leaves and floral organs and causes male and female sterility.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9LQR0|LBD1_ARATH LOB domain-containing protein 1 OS=Arabidopsis thaliana GN=LBD1 PE=2 SV=1

 Score =  144 bits (364), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 63/118 (53%), Positives = 84/118 (71%)

Query: 18  TVTPCAACKLLRRRCAEECPFSPYFSPHEPQKFAAVHKVFGASNVSKLLSEVPDSQRADA 77
            ++PCAACK+LRRRCAE C  +PYF P +P KF   H+VFGASN+ K L E+P+SQR DA
Sbjct: 30  VLSPCAACKILRRRCAERCVLAPYFPPTDPAKFTIAHRVFGASNIIKFLQELPESQRTDA 89

Query: 78  ANSLVFEANLRLRDPVYGCLGAISSLQQQVQSLQAELNAMRTEIMKYKYREAATASTI 135
            NS+V+EA  R+RDPVYGC GAI  LQ+QV  LQA+L   + E++  +++ +     I
Sbjct: 90  VNSMVYEAEARIRDPVYGCAGAIYHLQRQVSELQAQLAKAQVEMVNMQFQRSNLLELI 147

Arabidopsis thaliana (taxid: 3702)

>sp|Q9SK08|LBD11_ARATH LOB domain-containing protein 11 OS=Arabidopsis thaliana GN=LBD11 PE=2 SV=2

 Score =  144 bits (363), Expect = 4e-34,   Method: Compositional matrix adjust.
 Identities = 62/118 (52%), Positives = 85/118 (72%)

Query: 18  TVTPCAACKLLRRRCAEECPFSPYFSPHEPQKFAAVHKVFGASNVSKLLSEVPDSQRADA 77
            ++PCAACK+LRRRCA++C  +PYF P +P KF   H+VFGASN+ K L E+P+SQR DA
Sbjct: 52  VLSPCAACKILRRRCADKCVLAPYFPPTDPAKFTIAHRVFGASNIIKFLQELPESQRTDA 111

Query: 78  ANSLVFEANLRLRDPVYGCLGAISSLQQQVQSLQAELNAMRTEIMKYKYREAATASTI 135
            NS+V+EA  R+RDPVYGC GAI  LQ+QV  LQA+L   + E++  + + ++    I
Sbjct: 112 VNSMVYEAGARMRDPVYGCAGAIYHLQRQVSELQAQLAKTQVELVGMQLQRSSLLELI 169

Arabidopsis thaliana (taxid: 3702)

>sp|A1YKY7|IAL1_MAIZE Protein IAL1 OS=Zea mays PE=2 SV=1

 Score =  144 bits (362), Expect = 6e-34,   Method: Compositional matrix adjust.
 Identities = 62/112 (55%), Positives = 82/112 (73%)

Query: 14  GTLNTVTPCAACKLLRRRCAEECPFSPYFSPHEPQKFAAVHKVFGASNVSKLLSEVPDSQ 73
           G   T +PCAACK LRR+C  +C F+PYF P  PQKF  VH+VFGASNV+KL++E+   Q
Sbjct: 26  GVCGTGSPCAACKFLRRKCQPDCVFAPYFPPDNPQKFVRVHRVFGASNVTKLMNEIHPLQ 85

Query: 74  RADAANSLVFEANLRLRDPVYGCLGAISSLQQQVQSLQAELNAMRTEIMKYK 125
           R DA NSL +EA++R+RDPVYGC+G IS LQ  ++ LQ +L   + E+ KY+
Sbjct: 86  REDAMNSLAYEADMRIRDPVYGCVGVISILQHNLRQLQQDLARAKYELSKYQ 137

Zea mays (taxid: 4577)

>sp|Q32SG3|LBD6_MAIZE LOB domain-containing protein 6 OS=Zea mays GN=LBD6 PE=1 SV=1

 Score =  144 bits (362), Expect = 6e-34,   Method: Compositional matrix adjust.
 Identities = 63/109 (57%), Positives = 81/109 (74%)

Query: 17  NTVTPCAACKLLRRRCAEECPFSPYFSPHEPQKFAAVHKVFGASNVSKLLSEVPDSQRAD 76
            T +PCAACK LRR+C  +C F+PYF P  PQKF  VH+VFGASNV+KLL+E+   QR D
Sbjct: 29  GTGSPCAACKFLRRKCQPDCVFAPYFPPDNPQKFVHVHRVFGASNVTKLLNELHPFQRED 88

Query: 77  AANSLVFEANLRLRDPVYGCLGAISSLQQQVQSLQAELNAMRTEIMKYK 125
           A NSL +EA++RLRDPVYGC+G IS LQ  ++ LQ +L   + E+ KY+
Sbjct: 89  AVNSLAYEADMRLRDPVYGCVGVISILQHNLRQLQQDLARAKYELSKYQ 137

Promotes the switch from proliferation to differentiation in the embryo sac. Negative regulator of cell proliferation in the adaxial side of leaves. Regulates the formation of a symmetric lamina and the establishment of venation. Interacts directly with RS2 (rough sheath 2) to repress some knox homeobox genes.

Zea mays (taxid: 4577)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	212
224124780	223	predicted protein [Populus trichocarpa]	0.933	0.887	0.690	4e-68
225434379	229	PREDICTED: LOB domain-containing protein	0.952	0.882	0.690	9e-64
255559635	223	LOB domain-containing protein, putative	0.698	0.663	0.759	9e-63
225448621	224	PREDICTED: LOB domain-containing protein	0.938	0.888	0.668	2e-62
356553156	249	PREDICTED: LOB domain-containing protein	0.976	0.831	0.654	4e-62
224128870	180	predicted protein [Populus trichocarpa]	0.679	0.8	0.78	8e-62
356507496	222	PREDICTED: LOB domain-containing protein	0.683	0.653	0.772	4e-60
356516277	222	PREDICTED: LOB domain-containing protein	0.679	0.648	0.772	6e-60
224145480	223	predicted protein [Populus trichocarpa]	0.957	0.910	0.693	7e-60
255553357	233	LOB domain-containing protein, putative	0.679	0.618	0.767	5e-59

>gi|224124780|ref|XP_002319420.1| predicted protein [Populus trichocarpa] gi|222857796|gb|EEE95343.1| predicted protein [Populus trichocarpa]

 Score =  263 bits (671), Expect = 4e-68,   Method: Compositional matrix adjust.
 Identities = 147/213 (69%), Positives = 165/213 (77%), Gaps = 15/213 (7%)

Query: 1   MGRRQMLNPNSSAGTLNTVTPCAACKLLRRRCAEECPFSPYFSPHEPQKFAAVHKVFGAS 60
           MGRRQML P      LNTVTPCAACKLLRRRCAEECPFSPYFSPHEPQKFAAVHKV+GAS
Sbjct: 25  MGRRQMLGP---PVILNTVTPCAACKLLRRRCAEECPFSPYFSPHEPQKFAAVHKVYGAS 81

Query: 61  NVSKLLSEVPDSQRADAANSLVFEANLRLRDPVYGCLGAISSLQQQVQSLQAELNAMRTE 120
           NVSKLL EVP+SQR D ANSLV+EANLRLRDPVYG +GAIS+LQQQ+QSLQAEL+A+R E
Sbjct: 82  NVSKLLMEVPESQRVDTANSLVYEANLRLRDPVYGSMGAISALQQQIQSLQAELSAIRAE 141

Query: 121 IMKYKYREAATASTIISSSNP-LFSSGVVSIAGGSSAPSLSTSQPPPHPPPPPPPSIVIS 179
           I+ YKYREAA A+ IISS++P L SS  VSI    S PS + + PP              
Sbjct: 142 ILNYKYREAAAATNIISSTHPALVSSATVSI----STPSQTLAPPPQP-------PPPSV 190

Query: 180 SSSSSSVSSLYTPPMRTTGCSSISSDSIVPYFD 212
             SSSS SSLYTPP  T+G S+ISS++ VPYFD
Sbjct: 191 VVSSSSSSSLYTPPTSTSGYSTISSENNVPYFD 223

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225434379|ref|XP_002269676.1| PREDICTED: LOB domain-containing protein 15 [Vitis vinifera] gi|297745786|emb|CBI15842.3| unnamed protein product [Vitis vinifera]

 Score =  248 bits (634), Expect = 9e-64,   Method: Compositional matrix adjust.
 Identities = 147/213 (69%), Positives = 166/213 (77%), Gaps = 11/213 (5%)

Query: 1   MGRRQMLNPNSSAGTLNTVTPCAACKLLRRRCAEECPFSPYFSPHEPQKFAAVHKVFGAS 60
           MGRRQ+L P    GTLNT+TPCAACKLLRRRCAEECPFSPYFSPHEP KFAAVHKVFGAS
Sbjct: 27  MGRRQLLGP---PGTLNTITPCAACKLLRRRCAEECPFSPYFSPHEPHKFAAVHKVFGAS 83

Query: 61  NVSKLLSEVPDSQRADAANSLVFEANLRLRDPVYGCLGAISSLQQQVQSLQAELNAMRTE 120
           NVSK+L +V ++QRADA NSLVFEANLRLRDPVYGC+GAIS+LQ QV SLQ ELNA++ E
Sbjct: 84  NVSKMLMDVAENQRADAVNSLVFEANLRLRDPVYGCMGAISALQHQVHSLQTELNAVKAE 143

Query: 121 IMKYKYREAATASTIISSSNPLFSSGVVSIAGGSSAPSLSTSQPPPHPPPPPPPSIVISS 180
           I+KYKYREA  ASTIISSS+    + +VS    S +     S  PP P P PPP+  + S
Sbjct: 144 ILKYKYREA--ASTIISSSH----AALVSSESDSISAVSLPSSLPPPPLPLPPPTPSVVS 197

Query: 181 SSSSSVSSLYTP-PMRTTGCSSISSDSIVPYFD 212
           SS  S SSLYT  P  TTG SSI+SD+I PYFD
Sbjct: 198 SSPPSASSLYTILPSSTTGYSSITSDNI-PYFD 229

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255559635|ref|XP_002520837.1| LOB domain-containing protein, putative [Ricinus communis] gi|223539968|gb|EEF41546.1| LOB domain-containing protein, putative [Ricinus communis]

 Score =  245 bits (625), Expect = 9e-63,   Method: Compositional matrix adjust.
 Identities = 117/154 (75%), Positives = 134/154 (87%), Gaps = 6/154 (3%)

Query: 1   MGRRQMLNPNSSAGTLNTVTPCAACKLLRRRCAEECPFSPYFSPHEPQKFAAVHKVFGAS 60
           MGRR ML P    GTLNT+TPCAACKLLRRRCA+ECPFSPYFSPHEPQKFA+VHKVFGAS
Sbjct: 25  MGRRHMLGP---PGTLNTITPCAACKLLRRRCAQECPFSPYFSPHEPQKFASVHKVFGAS 81

Query: 61  NVSKLLSEVPDSQRADAANSLVFEANLRLRDPVYGCLGAISSLQQQVQSLQAELNAMRTE 120
           NVSK+L EVP+SQRADAANSLV+EAN+RLRDPVYGC+GAIS+LQQQ+Q+LQAELNA+R E
Sbjct: 82  NVSKMLMEVPESQRADAANSLVYEANVRLRDPVYGCMGAISALQQQIQTLQAELNAVRAE 141

Query: 121 IMKYKYREAATASTIISSSNPLFSSGVVSIAGGS 154
           I+KYKYRE   A+ + S+   L SSG VS+A  S
Sbjct: 142 ILKYKYRE---ANILPSTHVALLSSGAVSVAATS 172

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225448621|ref|XP_002279029.1| PREDICTED: LOB domain-containing protein 15 [Vitis vinifera] gi|297736521|emb|CBI25392.3| unnamed protein product [Vitis vinifera]

 Score =  244 bits (622), Expect = 2e-62,   Method: Compositional matrix adjust.
 Identities = 141/211 (66%), Positives = 164/211 (77%), Gaps = 12/211 (5%)

Query: 1   MGRRQMLNPNSSAGTLNTVTPCAACKLLRRRCAEECPFSPYFSPHEPQKFAAVHKVFGAS 60
           MGRR ML P    GTLN++TPCAACKLLRRRCA+ECPFSPYFSPHEPQKFA+VHKVFGAS
Sbjct: 25  MGRRHMLGP---PGTLNSITPCAACKLLRRRCAQECPFSPYFSPHEPQKFASVHKVFGAS 81

Query: 61  NVSKLLSEVPDSQRADAANSLVFEANLRLRDPVYGCLGAISSLQQQVQSLQAELNAMRTE 120
           NVSK+L EVP+SQRADAANSLV+EAN+RLRDPVYGC+GAIS+LQQQVQSLQAELNA+R E
Sbjct: 82  NVSKMLMEVPESQRADAANSLVYEANVRLRDPVYGCMGAISALQQQVQSLQAELNAVRAE 141

Query: 121 IMKYKYREAATASTIISSSNPLFSSGVVSIAGGSSAPSLSTSQPPPHPPPPPPPSIVISS 180
           I+KYKYRE   A+ I  S   L SSG VS+A    A   + + PPP PPPP P  +  +S
Sbjct: 142 ILKYKYRE---ANIIPPSHIALLSSGAVSVAAPPPAQPPAQAPPPPPPPPPIPLPLPPNS 198

Query: 181 SSSSSVSSLYTPPMRTTGCSSISSDSIVPYF 211
           S     SS+YT P  +   S+ISS++ V YF
Sbjct: 199 S-----SSMYTQPSSSADYSTISSEN-VSYF 223

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356553156|ref|XP_003544924.1| PREDICTED: LOB domain-containing protein 13-like [Glycine max]

 Score =  243 bits (620), Expect = 4e-62,   Method: Compositional matrix adjust.
 Identities = 148/226 (65%), Positives = 168/226 (74%), Gaps = 19/226 (8%)

Query: 1   MGRRQMLNPNSSAGTLNTVTPCAACKLLRRRCAEECPFSPYFSPHEPQKFAAVHKVFGAS 60
           MGR+    P +   TLNTVTPCAACKLLRRRCAEECPFSPYFSPHEPQKFAAVHKVFGAS
Sbjct: 27  MGRKHFYGP-TPGTTLNTVTPCAACKLLRRRCAEECPFSPYFSPHEPQKFAAVHKVFGAS 85

Query: 61  NVSKLLSEVPDSQRADAANSLVFEANLRLRDPVYGCLGAISSLQQQVQSLQAELNAMRTE 120
           NVSK+L EVP+ QRADAANSLV+EANLRLRDPVYGC+GAIS+LQQQVQ+LQAELNA+R E
Sbjct: 86  NVSKMLMEVPEGQRADAANSLVYEANLRLRDPVYGCMGAISALQQQVQTLQAELNAIRAE 145

Query: 121 IMKYKYREAATASTIISSSNPLF--SSGVVSIAGGSSAPSLSTSQ-------------PP 165
           I+KYKYREAA   +IISS +     S+  +SIA   +  S   SQ             P 
Sbjct: 146 ILKYKYREAA---SIISSQHVALVSSADAISIAAIPADSSQGLSQPHAHPHPPPPKPLPS 202

Query: 166 PHPPPPPPPSIVISSSSSSSVSSLYTPPMRTTGCSSISSDSIVPYF 211
           P P P P PSI++SS SSSS SS+YTPP  T    SIS+ + VPYF
Sbjct: 203 PLPKPLPSPSIILSSLSSSSASSVYTPPKSTMSLGSISTTANVPYF 248

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224128870|ref|XP_002328987.1| predicted protein [Populus trichocarpa] gi|222839221|gb|EEE77572.1| predicted protein [Populus trichocarpa]

 Score =  242 bits (617), Expect = 8e-62,   Method: Compositional matrix adjust.
 Identities = 117/150 (78%), Positives = 131/150 (87%), Gaps = 6/150 (4%)

Query: 1   MGRRQMLNPNSSAGTLNTVTPCAACKLLRRRCAEECPFSPYFSPHEPQKFAAVHKVFGAS 60
           MGRR ML P    GTLNT+TPCAACKLLRRRCA+ECPFSPYFSPHEPQKFA+VHKVFGAS
Sbjct: 23  MGRRHMLGP---PGTLNTITPCAACKLLRRRCAQECPFSPYFSPHEPQKFASVHKVFGAS 79

Query: 61  NVSKLLSEVPDSQRADAANSLVFEANLRLRDPVYGCLGAISSLQQQVQSLQAELNAMRTE 120
           NVSK+L EVP +QRADAANSLV+EAN+RLRDPVYGC+GAIS+LQQQVQSL+AELNA+R E
Sbjct: 80  NVSKMLMEVPQNQRADAANSLVYEANVRLRDPVYGCMGAISALQQQVQSLEAELNAVRNE 139

Query: 121 IMKYKYREAATASTIISSSNPLFSSGVVSI 150
           I+KY+YRE   A+ I SS   L SSG VSI
Sbjct: 140 ILKYRYRE---ANIIHSSHVALLSSGAVSI 166

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356507496|ref|XP_003522500.1| PREDICTED: LOB domain-containing protein 15-like [Glycine max]

 Score =  236 bits (602), Expect = 4e-60,   Method: Compositional matrix adjust.
 Identities = 119/154 (77%), Positives = 132/154 (85%), Gaps = 9/154 (5%)

Query: 1   MGRRQMLNPNSSAGTLNTVTPCAACKLLRRRCAEECPFSPYFSPHEPQKFAAVHKVFGAS 60
           MGRR ML P    GTLNT+TPCAACKLLRRRCA+ECPFSPYFSPHEPQKFA+VHKVFGAS
Sbjct: 25  MGRRHMLGP---PGTLNTITPCAACKLLRRRCAQECPFSPYFSPHEPQKFASVHKVFGAS 81

Query: 61  NVSKLLSEVPDSQRADAANSLVFEANLRLRDPVYGCLGAISSLQQQVQSLQAELNAMRTE 120
           NVSK+L EVP+ QRADAANSLV+EAN+RLRDPVYGC+GAIS+LQQQVQSLQAELNA+R E
Sbjct: 82  NVSKMLMEVPECQRADAANSLVYEANVRLRDPVYGCMGAISALQQQVQSLQAELNAVRGE 141

Query: 121 IMKYKYREAATASTIISSSNP--LFSSGVVSIAG 152
           I+KYK REA     +I SS+   L SSG VSIA 
Sbjct: 142 ILKYKLREA----NMIPSSHVAMLPSSGAVSIAA 171

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356516277|ref|XP_003526822.1| PREDICTED: LOB domain-containing protein 15-like [Glycine max]

 Score =  236 bits (601), Expect = 6e-60,   Method: Compositional matrix adjust.
 Identities = 119/154 (77%), Positives = 132/154 (85%), Gaps = 10/154 (6%)

Query: 1   MGRRQMLNPNSSAGTLNTVTPCAACKLLRRRCAEECPFSPYFSPHEPQKFAAVHKVFGAS 60
           MGRR ML P    GTLNT+TPCAACKLLRRRCA+ECPFSPYFSPHEPQKFA+VHKVFGAS
Sbjct: 25  MGRRHMLGP---PGTLNTITPCAACKLLRRRCAQECPFSPYFSPHEPQKFASVHKVFGAS 81

Query: 61  NVSKLLSEVPDSQRADAANSLVFEANLRLRDPVYGCLGAISSLQQQVQSLQAELNAMRTE 120
           NVSK+L EVP+ QRADAANSLV+EAN+RLRDPVYGC+GAIS+LQQQVQSLQAELNA+R E
Sbjct: 82  NVSKMLMEVPECQRADAANSLVYEANVRLRDPVYGCMGAISALQQQVQSLQAELNAVRGE 141

Query: 121 IMKYKYREAATASTIISSSNP---LFSSGVVSIA 151
           I+KYK REA     +I SS+    L SSG VSIA
Sbjct: 142 ILKYKLREA----NMIPSSHHVGMLPSSGAVSIA 171

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224145480|ref|XP_002325658.1| predicted protein [Populus trichocarpa] gi|222862533|gb|EEF00040.1| predicted protein [Populus trichocarpa]

 Score =  235 bits (600), Expect = 7e-60,   Method: Compositional matrix adjust.
 Identities = 147/212 (69%), Positives = 167/212 (78%), Gaps = 9/212 (4%)

Query: 1   MGRRQMLNPNSSAGTLNTVTPCAACKLLRRRCAEECPFSPYFSPHEPQKFAAVHKVFGAS 60
           MGRRQML P    G LNTVTPCAACKLLRRRCAEECPFSPYFSP EPQKFAAVHKVFGAS
Sbjct: 21  MGRRQMLGP---PGILNTVTPCAACKLLRRRCAEECPFSPYFSPLEPQKFAAVHKVFGAS 77

Query: 61  NVSKLLSEVPDSQRADAANSLVFEANLRLRDPVYGCLGAISSLQQQVQSLQAELNAMRTE 120
           NVSKLL EVP+SQRADAANSLV+EANLRLRDPVYG +GAIS+LQQQ+Q LQAEL+A R +
Sbjct: 78  NVSKLLMEVPESQRADAANSLVYEANLRLRDPVYGSMGAISALQQQIQLLQAELSATRAD 137

Query: 121 IMKYKYREAATASTIISSSNPLFSSGVVSIAGGSSAPSLSTSQPPPHPPPPPPPSIVISS 180
           I+ YKYREAA ++ I S+   L SS   S+    SAPS + +   P PPPP PP + +  
Sbjct: 138 ILNYKYREAAASNIISSTHAALVSSATASL----SAPSQTLAP--PPPPPPTPPPLSVVV 191

Query: 181 SSSSSVSSLYTPPMRTTGCSSISSDSIVPYFD 212
           S S+S  SLYTPP  T+G S+ISSD+ VPYFD
Sbjct: 192 SLSTSSPSLYTPPTSTSGYSTISSDNNVPYFD 223

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255553357|ref|XP_002517720.1| LOB domain-containing protein, putative [Ricinus communis] gi|223543118|gb|EEF44652.1| LOB domain-containing protein, putative [Ricinus communis]

 Score =  233 bits (593), Expect = 5e-59,   Method: Compositional matrix adjust.
 Identities = 112/146 (76%), Positives = 126/146 (86%), Gaps = 2/146 (1%)

Query: 1   MGRRQMLNPNSSAGTLNTVTPCAACKLLRRRCAEECPFSPYFSPHEPQKFAAVHKVFGAS 60
           MGRR  L P    G LNTVTPCAACKLLRRRCAEECPFSPYFSPHEP+KFAAVHKVFGAS
Sbjct: 28  MGRRHALTP--PPGFLNTVTPCAACKLLRRRCAEECPFSPYFSPHEPRKFAAVHKVFGAS 85

Query: 61  NVSKLLSEVPDSQRADAANSLVFEANLRLRDPVYGCLGAISSLQQQVQSLQAELNAMRTE 120
           NVSK+L EVPDSQRAD ANSLV+EANLR+RDPVYGC+GAIS+LQQQ+QSLQAEL A+R+E
Sbjct: 86  NVSKMLMEVPDSQRADTANSLVYEANLRIRDPVYGCMGAISALQQQIQSLQAELTAVRSE 145

Query: 121 IMKYKYREAATASTIISSSNPLFSSG 146
           I+KYKYREA +     ++ + L SSG
Sbjct: 146 IIKYKYREATSNFFPSTAHDALVSSG 171

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	212
TAIR|locus:2065769	268	LBD13 "AT2G30340" [Arabidopsis	0.594	0.470	0.705	3.3e-47
TAIR|locus:2061828	224	LBD15 "LOB domain-containing p	0.580	0.549	0.738	1.8e-46
TAIR|locus:2060842	193	ASL5 [Arabidopsis thaliana (ta	0.485	0.533	0.621	3.3e-31
TAIR|locus:2197500	172	LBD4 "LOB domain-containing pr	0.514	0.633	0.568	1.1e-30
TAIR|locus:2034163	199	AS2 "ASYMMETRIC LEAVES 2" [Ara	0.514	0.547	0.568	1.1e-30
TAIR|locus:2089184	159	LBD25 "LOB domain-containing p	0.504	0.672	0.551	5.6e-29
TAIR|locus:2026611	190	LBD1 "LOB domain-containing pr	0.566	0.631	0.483	1.2e-28
TAIR|locus:2174989	313	ASL1 "ASYMMETRIC LEAVES 2-like	0.495	0.335	0.561	1.2e-28
UNIPROTKB|Q32SG3	260	LBD6 "LOB domain-containing pr	0.542	0.442	0.513	1.9e-28
TAIR|locus:2161982	186	LOB "LATERAL ORGAN BOUNDARIES"	0.528	0.602	0.535	3.9e-28

TAIR|locus:2065769 LBD13 "AT2G30340" [Arabidopsis thaliana (taxid:3702)]

 Score = 468 (169.8 bits), Expect = 3.3e-47, Sum P(2) = 3.3e-47
 Identities = 91/129 (70%), Positives = 104/129 (80%)

Query:     1 MG-RRQMLNPNSSAGTLNTVTPCAACKLLRRRCAEECPFSPYFSPHEPQKFAAVHKVFGA 59
             MG RR +  P  +  TLNTVTPCAACKLLRRRCAEECPFSPYFSPHEP KFAAVHKVFGA
Sbjct:    33 MGIRRHVAVPPGT--TLNTVTPCAACKLLRRRCAEECPFSPYFSPHEPHKFAAVHKVFGA 90

Query:    60 SNVSKLLSEVPDSQRADAANSLVFEANLRLRDPVYGCLGAIXXXXXXXXXXXAELNAMRT 119
             SNVSK+L EV +SQR DAANSLV+EANLRLRDP+YGC+GAI           +EL  +RT
Sbjct:    91 SNVSKMLLEVGESQRGDAANSLVYEANLRLRDPIYGCMGAISALQHHIQSLQSELTTVRT 150

Query:   120 EIMKYKYRE 128
             EI+++KY+E
Sbjct:   151 EILRHKYQE 159

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0016020 "membrane" evidence=IDA

TAIR|locus:2061828 LBD15 "LOB domain-containing protein 15" [Arabidopsis thaliana (taxid:3702)]

 Score = 487 (176.5 bits), Expect = 1.8e-46, P = 1.8e-46
 Identities = 93/126 (73%), Positives = 104/126 (82%)

Query:     3 RRQMLNPNSSAGTLNTVTPCAACKLLRRRCAEECPFSPYFSPHEPQKFAAVHKVFGASNV 62
             RR M  P    GTLNT+TPCAACKLLRRRCA+ECPFSPYFSPHEP KFA+VHKVFGASNV
Sbjct:    30 RRPMSGP---PGTLNTITPCAACKLLRRRCAQECPFSPYFSPHEPHKFASVHKVFGASNV 86

Query:    63 SKLLSEVPDSQRADAANSLVFEANLRLRDPVYGCLGAIXXXXXXXXXXXAELNAMRTEIM 122
             SK+L EVP+SQRADAANSLV+EAN+RLRDPVYGC+GAI           AEL A+R+EI+
Sbjct:    87 SKMLMEVPESQRADAANSLVYEANVRLRDPVYGCMGAISALQQQVQALQAELTAVRSEIL 146

Query:   123 KYKYRE 128
             KYK RE
Sbjct:   147 KYKQRE 152

GO:0005634 "nucleus" evidence=ISM;IDA

GO:0008150 "biological_process" evidence=ND

GO:0005515 "protein binding" evidence=IPI

TAIR|locus:2060842 ASL5 [Arabidopsis thaliana (taxid:3702)]

 Score = 343 (125.8 bits), Expect = 3.3e-31, P = 3.3e-31
 Identities = 64/103 (62%), Positives = 77/103 (74%)

Query:    20 TPCAACKLLRRRCAEECPFSPYFSPHEPQKFAAVHKVFGASNVSKLLSEVPDSQRADAAN 79
             +PCA+CKLLRRRCA++C F+PYF P +P KFA VHKVFGASNVSK+L E+P  QRADA N
Sbjct:     7 SPCASCKLLRRRCAKDCIFAPYFPPDDPHKFAIVHKVFGASNVSKMLQELPVHQRADAVN 66

Query:    80 SLVFEANLRLRDPVYGCLGAIXXXXXXXXXXXAELNAMRTEIM 122
             SLVFEAN R+RDPVYGC+GAI            +L   + EI+
Sbjct:    67 SLVFEANARVRDPVYGCVGAISYLQNQVSQLQMQLAVAQAEIL 109

GO:0005634 "nucleus" evidence=ISM

GO:0003677 "DNA binding" evidence=TAS

GO:0009965 "leaf morphogenesis" evidence=IMP

GO:0010016 "shoot system morphogenesis" evidence=IMP

TAIR|locus:2197500 LBD4 "LOB domain-containing protein 4" [Arabidopsis thaliana (taxid:3702)]

 Score = 338 (124.0 bits), Expect = 1.1e-30, P = 1.1e-30
 Identities = 62/109 (56%), Positives = 80/109 (73%)

Query:    20 TPCAACKLLRRRCAEECPFSPYFSPHEPQKFAAVHKVFGASNVSKLLSEVPDSQRADAAN 79
             +PCAACKLLRRRCA++C FSPYF   EPQKFA VH+VFGASNV+K+L E+P  QR DA +
Sbjct:    12 SPCAACKLLRRRCAQDCVFSPYFPADEPQKFANVHRVFGASNVNKMLQELPIHQRGDAVS 71

Query:    80 SLVFEANLRLRDPVYGCLGAIXXXXXXXXXXXAELNAMRTEIMKYKYRE 128
             S+V+EAN R+RDPVYGC+GAI           A+L   + E++  + R+
Sbjct:    72 SMVYEANARVRDPVYGCVGAISSLQQQIDVLQAQLALAQAEVVHLRVRQ 120

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0009855 "determination of bilateral symmetry" evidence=RCA

GO:0009944 "polarity specification of adaxial/abaxial axis" evidence=RCA

GO:0010014 "meristem initiation" evidence=RCA

GO:0010075 "regulation of meristem growth" evidence=RCA

TAIR|locus:2034163 AS2 "ASYMMETRIC LEAVES 2" [Arabidopsis thaliana (taxid:3702)]

 Score = 338 (124.0 bits), Expect = 1.1e-30, P = 1.1e-30
 Identities = 62/109 (56%), Positives = 80/109 (73%)

Query:    17 NTVTPCAACKLLRRRCAEECPFSPYFSPHEPQKFAAVHKVFGASNVSKLLSEVPDSQRAD 76
             +T +PCAACK LRR+C  EC F+PYF P +PQKFA VHKVFGASNV+KLL+E+  SQR D
Sbjct:     5 STNSPCAACKFLRRKCQPECVFAPYFPPDQPQKFANVHKVFGASNVTKLLNELHPSQRED 64

Query:    77 AANSLVFEANLRLRDPVYGCLGAIXXXXXXXXXXXAELNAMRTEIMKYK 125
             A NSL +EA++RLRDPVYGC+G I            +L+  ++E+ KY+
Sbjct:    65 AVNSLAYEADMRLRDPVYGCVGVISLLQHQLRQLQIDLSCAKSELSKYQ 113

GO:0005634 "nucleus" evidence=ISM;IDA

GO:0009799 "specification of symmetry" evidence=IMP

GO:0009954 "proximal/distal pattern formation" evidence=IGI

GO:0048441 "petal development" evidence=IGI

GO:0005515 "protein binding" evidence=IPI

GO:0009944 "polarity specification of adaxial/abaxial axis" evidence=IMP

GO:0005654 "nucleoplasm" evidence=IDA

GO:0009943 "adaxial/abaxial axis specification" evidence=IMP

TAIR|locus:2089184 LBD25 "LOB domain-containing protein 25" [Arabidopsis thaliana (taxid:3702)]

 Score = 322 (118.4 bits), Expect = 5.6e-29, P = 5.6e-29
 Identities = 59/107 (55%), Positives = 72/107 (67%)

Query:    18 TVTPCAACKLLRRRCAEECPFSPYFSPHEPQKFAAVHKVFGASNVSKLLSEVPDSQRADA 77
             T +PCAACK LRR+C  +C F+PYF P EP KFA VH++FGASNVSK+L EV   QR DA
Sbjct:    36 TNSPCAACKFLRRKCTSDCVFAPYFPPEEPTKFANVHRIFGASNVSKILHEVAPHQREDA 95

Query:    78 ANSLVFEANLRLRDPVYGCLGAIXXXXXXXXXXXAELNAMRTEIMKY 124
              NSL +EA  RL+DPVYGC+GAI            EL     ++M+Y
Sbjct:    96 VNSLAYEAEARLKDPVYGCVGAISVLQRQVLRLQRELEETNADLMRY 142

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2026611 LBD1 "LOB domain-containing protein 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 319 (117.4 bits), Expect = 1.2e-28, P = 1.2e-28
 Identities = 58/120 (48%), Positives = 78/120 (65%)

Query:     8 NPNSSAGTLNTVTPCAACKLLRRRCAEECPFSPYFSPHEPQKFAAVHKVFGASNVSKLLS 67
             +P  S      ++PCAACK+LRRRCAE C  +PYF P +P KF   H+VFGASN+ K L 
Sbjct:    20 SPPPSLSPRVVLSPCAACKILRRRCAERCVLAPYFPPTDPAKFTIAHRVFGASNIIKFLQ 79

Query:    68 EVPDSQRADAANSLVFEANLRLRDPVYGCLGAIXXXXXXXXXXXAELNAMRTEIMKYKYR 127
             E+P+SQR DA NS+V+EA  R+RDPVYGC GAI           A+L   + E++  +++
Sbjct:    80 ELPESQRTDAVNSMVYEAEARIRDPVYGCAGAIYHLQRQVSELQAQLAKAQVEMVNMQFQ 139

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0005739 "mitochondrion" evidence=IDA

TAIR|locus:2174989 ASL1 "ASYMMETRIC LEAVES 2-like 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 319 (117.4 bits), Expect = 1.2e-28, P = 1.2e-28
 Identities = 59/105 (56%), Positives = 73/105 (69%)

Query:    20 TPCAACKLLRRRCAEECPFSPYFSPHEPQKFAAVHKVFGASNVSKLLSEVPDSQRADAAN 79
             +PCAACK LRR+C +EC F+PYF P +PQKFA VHKVFGASNV+KLL+E+  +QR DA N
Sbjct:     6 SPCAACKFLRRKCTQECVFAPYFPPDQPQKFAFVHKVFGASNVAKLLNELASNQREDAVN 65

Query:    80 SLVFEANLRLRDPVYGCLGAIXXXXXXXXXXXAELNAMRTEIMKY 124
             SL +EA  RLRDPVYGC+G I            +L   + E+  Y
Sbjct:    66 SLFYEAEARLRDPVYGCVGLISILQHRLKQVNHDLENAKKELATY 110

GO:0005634 "nucleus" evidence=ISM

GO:0009965 "leaf morphogenesis" evidence=IMP

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IMP

GO:0009954 "proximal/distal pattern formation" evidence=IGI

GO:0048441 "petal development" evidence=IGI

UNIPROTKB|Q32SG3 LBD6 "LOB domain-containing protein 6" [Zea mays (taxid:4577)]

 Score = 317 (116.6 bits), Expect = 1.9e-28, P = 1.9e-28
 Identities = 59/115 (51%), Positives = 77/115 (66%)

Query:    11 SSAGTLNTVTPCAACKLLRRRCAEECPFSPYFSPHEPQKFAAVHKVFGASNVSKLLSEVP 70
             ++A    T +PCAACK LRR+C  +C F+PYF P  PQKF  VH+VFGASNV+KLL+E+ 
Sbjct:    23 AAAAVCGTGSPCAACKFLRRKCQPDCVFAPYFPPDNPQKFVHVHRVFGASNVTKLLNELH 82

Query:    71 DSQRADAANSLVFEANLRLRDPVYGCLGAIXXXXXXXXXXXAELNAMRTEIMKYK 125
               QR DA NSL +EA++RLRDPVYGC+G I            +L   + E+ KY+
Sbjct:    83 PFQREDAVNSLAYEADMRLRDPVYGCVGVISILQHNLRQLQQDLARAKYELSKYQ 137

GO:0005515 "protein binding" evidence=IPI

TAIR|locus:2161982 LOB "LATERAL ORGAN BOUNDARIES" [Arabidopsis thaliana (taxid:3702)]

 Score = 314 (115.6 bits), Expect = 3.9e-28, P = 3.9e-28
 Identities = 61/114 (53%), Positives = 76/114 (66%)

Query:    11 SSAGTLNTVTPCAACKLLRRRCAEECPFSPYFSPHEPQKFAAVHKVFGASNVSKLLSEVP 70
             SS+ + N+  PCAACK LRR+C   C F+PYF P EP KFA VHK+FGASNV+KLL+E+ 
Sbjct:     3 SSSNSYNS--PCAACKFLRRKCMPGCIFAPYFPPEEPHKFANVHKIFGASNVTKLLNELL 60

Query:    71 DSQRADAANSLVFEANLRLRDPVYGCLGAIXXXXXXXXXXXAELNAMRTEIMKY 124
               QR DA NSL +EA  R+RDPVYGC+GAI            EL+A   ++  Y
Sbjct:    61 PHQREDAVNSLAYEAEARVRDPVYGCVGAISYLQRQVHRLQKELDAANADLAHY 114

GO:0005634 "nucleus" evidence=ISM

GO:0010199 "organ boundary specification between lateral organs and the meristem" evidence=IMP

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q9AT61	LBD13_ARATH	No assigned EC number	0.7619	0.5943	0.4701	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	212
pfam03195	101	pfam03195, DUF260, Protein of unknown function DUF	4e-52
PLN02217	670	PLN02217, PLN02217, probable pectinesterase/pectin	4e-04
pfam05308	248	pfam05308, Mito_fiss_reg, Mitochondrial fission re	4e-04
pfam01213	313	pfam01213, CAP_N, Adenylate cyclase associated (CA	0.002

>gnl|CDD|190559 pfam03195, DUF260, Protein of unknown function DUF260

 Score =  162 bits (413), Expect = 4e-52
 Identities = 58/101 (57%), Positives = 76/101 (75%)

Query: 21  PCAACKLLRRRCAEECPFSPYFSPHEPQKFAAVHKVFGASNVSKLLSEVPDSQRADAANS 80
           PCAACK LRR+C  +C  +PYF   +P +FA VHK+FGASNV+KLL  +P  QR DA  S
Sbjct: 1   PCAACKHLRRKCPPDCVLAPYFPAEQPARFANVHKLFGASNVTKLLKALPPEQRDDAMRS 60

Query: 81  LVFEANLRLRDPVYGCLGAISSLQQQVQSLQAELNAMRTEI 121
           L++EA+ R RDPVYGC+G I SLQQQ++ LQAEL  ++ ++
Sbjct: 61  LLYEADARARDPVYGCVGVIWSLQQQLEQLQAELALVKAQL 101

Length = 101

>gnl|CDD|215130 PLN02217, PLN02217, probable pectinesterase/pectinesterase inhibitor

 Score = 40.5 bits (94), Expect = 4e-04
 Identities = 22/82 (26%), Positives = 34/82 (41%), Gaps = 3/82 (3%)

Query: 129 AATASTIISSSNPLFSSGVVSIAGGSSAPSLSTSQPPPH-PPPPPPPSIVISSSSSSSVS 187
            +T ST   S+    ++   S    S+  + STS P  H   PP  PS ++S S+S   S
Sbjct: 567 GSTNSTPTGSAASSNTTF--SSDSPSTVVAPSTSPPAGHLGSPPATPSKIVSPSTSPPAS 624

Query: 188 SLYTPPMRTTGCSSISSDSIVP 209
            L +P    +   S    +   
Sbjct: 625 HLGSPSTTPSSPESSIKVASTE 646

Length = 670

>gnl|CDD|218549 pfam05308, Mito_fiss_reg, Mitochondrial fission regulator

 Score = 39.7 bits (93), Expect = 4e-04
 Identities = 26/85 (30%), Positives = 41/85 (48%), Gaps = 5/85 (5%)

Query: 105 QQVQSLQAELNAMRTEIMKYKYREAATASTIISSSNPLF-----SSGVVSIAGGSSAPSL 159
           Q++ +L+ EL  +R +I K    +  + ST     +        S+    I+  +  P L
Sbjct: 122 QKISALEDELAFLRAQIAKIVAAQEQSNSTTSDLLSSDESVPSSSTTSFPISPPTEEPVL 181

Query: 160 STSQPPPHPPPPPPPSIVISSSSSS 184
               PPP PPPPPPPS+  S+S+  
Sbjct: 182 EVPPPPPPPPPPPPPSLQQSTSAID 206

In eukaryotes, this family of proteins induces mitochondrial fission. Length = 248

>gnl|CDD|216368 pfam01213, CAP_N, Adenylate cyclase associated (CAP) N terminal

 Score = 37.9 bits (88), Expect = 0.002
 Identities = 19/48 (39%), Positives = 22/48 (45%)

Query: 147 VVSIAGGSSAPSLSTSQPPPHPPPPPPPSIVISSSSSSSVSSLYTPPM 194
           V +      A S S    PP PPPPPPPS+   S+S  S SS      
Sbjct: 215 VAAAKSALPAVSSSAPSAPPPPPPPPPPSVPTISNSVESASSDSKGGR 262

Length = 313

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	212
PF03195	101	DUF260: Protein of unknown function DUF260; InterP	100.0
PF05308	253	Mito_fiss_reg: Mitochondrial fission regulator; In	97.08
PF05308	253	Mito_fiss_reg: Mitochondrial fission regulator; In	95.92
COG3416	233	Uncharacterized protein conserved in bacteria [Fun	94.86
PF09849	247	DUF2076: Uncharacterized protein conserved in bact	88.48
PF09006	46	Surfac_D-trimer: Lung surfactant protein D coiled-	86.6
PF01213	312	CAP_N: Adenylate cyclase associated (CAP) N termin	86.44
PLN02523	559	galacturonosyltransferase	85.71
KOG2675	480	consensus Adenylate cyclase-associated protein (CA	84.16
KOG1924	1102	consensus RhoA GTPase effector DIA/Diaphanous [Sig	83.67
PRK10265	101	chaperone-modulator protein CbpM; Provisional	83.6
KOG1924	1102	consensus RhoA GTPase effector DIA/Diaphanous [Sig	82.41
PF06698	59	DUF1192: Protein of unknown function (DUF1192); In	80.96
PF11333	83	DUF3135: Protein of unknown function (DUF3135); In	80.19

>PF03195 DUF260: Protein of unknown function DUF260; InterPro: IPR004883 The lateral organ boundaries (LOB) gene is expressed at the adaxial base of initiating lateral organs and encodes a plant-specific protein of unknown function

Probab=100.00  E-value=9.4e-51  Score=315.77  Aligned_cols=101  Identities=63%  Similarity=1.114  Sum_probs=99.6

Q ss_pred             CChhhHHhhhcCCCCCCCCCCCCCCchhHHHHHHHhhchhhHHHHHhcCCCcchHHHHHHHHHHHhhhcCCCCCchhHHH
Q 028221           21 PCAACKLLRRRCAEECPFSPYFSPHEPQKFAAVHKVFGASNVSKLLSEVPDSQRADAANSLVFEANLRLRDPVYGCLGAI  100 (212)
Q Consensus        21 ~CAACK~qRRkC~~dCilAPYFPad~~q~Fa~vhKvFG~sNV~kmL~~lp~~qR~da~~SLvYEA~aR~rDPVyGC~GiI  100 (212)
                      +|||||||||||++||+||||||++++++|++||||||++||+|||+++++++|+|+|+||+|||++|.+||||||+|+|
T Consensus         1 ~CaaCk~lRr~C~~~C~laPyFP~~~~~~F~~vhkvFG~sni~k~L~~~~~~~R~~a~~Sl~yEA~~R~~dPv~Gc~G~i   80 (101)
T PF03195_consen    1 PCAACKHLRRRCSPDCVLAPYFPADQPQRFANVHKVFGVSNISKMLQELPPEQREDAMRSLVYEANARARDPVYGCVGII   80 (101)
T ss_pred             CChHHHHHhCCCCCCCcCCCCCChhHHHHHHHHHHHHchhHHHHHHHhCCccchhhHHHHHHHHHHhhccCCCcchHHHH
Confidence            69999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHH
Q 028221          101 SSLQQQVQSLQAELNAMRTEI  121 (212)
Q Consensus       101 ~~Lq~QI~~lqaEL~~vr~eL  121 (212)
                      +.|||||+++++||+.+++||
T Consensus        81 ~~L~~ql~~~~~el~~~~~~l  101 (101)
T PF03195_consen   81 SQLQQQLQQLQAELALVRAQL  101 (101)
T ss_pred             HHHHHHHHHHHHHHHHHHccC
Confidence            999999999999999999886

The N-terminal one half of the LOB protein contains a conserved approximately 100-amino acid domain (the LOB domain) that is present in 42 other Arabidopsis thaliana proteins and in proteins from a variety of other plant species. Genes encoding LOB domain (LBD) proteins are expressed in a variety of temporal- and tissue-specific patterns, suggesting that they may function in diverse processes [] The LOB domain contains conserved blocks of amino acids that identify the LBD gene family. In particular, a conserved C-x(2)-C-x(6)-C-x(3)-C motif, which is defining feature of the LOB domain, is present in all LBD proteins. It is possible that this motif forms a new zinc finger [].

>PF05308 Mito_fiss_reg: Mitochondrial fission regulator; InterPro: IPR007972 This family consists of several uncharacterised eukaryotic proteins of unknown function

Probab=97.08  E-value=0.0019  Score=57.90  Aligned_cols=23  Identities=30%  Similarity=0.479  Sum_probs=18.2

Q ss_pred             HHHHHHHHHHHHHHHHHHhhhhH
Q 028221          105 QQVQSLQAELNAMRTEIMKYKYR  127 (212)
Q Consensus       105 ~QI~~lqaEL~~vr~eL~~yr~q  127 (212)
                      ++|..||.||..+|+||++....
T Consensus       122 qKIsALEdELs~LRaQIA~IV~~  144 (253)
T PF05308_consen  122 QKISALEDELSRLRAQIAKIVAA  144 (253)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhc
Confidence            56777888888888888887763

>PF05308 Mito_fiss_reg: Mitochondrial fission regulator; InterPro: IPR007972 This family consists of several uncharacterised eukaryotic proteins of unknown function

Probab=95.92  E-value=0.018  Score=51.78  Aligned_cols=22  Identities=27%  Similarity=0.526  Sum_probs=18.8

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHH
Q 028221           96 CLGAISSLQQQVQSLQAELNAM  117 (212)
Q Consensus        96 C~GiI~~Lq~QI~~lqaEL~~v  117 (212)
                      ...-|..||.+|..|++||+.+
T Consensus       120 AlqKIsALEdELs~LRaQIA~I  141 (253)
T PF05308_consen  120 ALQKISALEDELSRLRAQIAKI  141 (253)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHH
Confidence            3567899999999999999985

>COG3416 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=94.86  E-value=0.25  Score=44.31  Aligned_cols=68  Identities=18%  Similarity=0.224  Sum_probs=58.6

Q ss_pred             hHHHHHhcCCCcchHHHHHHHHHHHhhhcCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHH
Q 028221           61 NVSKLLSEVPDSQRADAANSLVFEANLRLRDPVYGCLGAISSLQQQVQSLQAELNAMRTEIMKYKYRE  128 (212)
Q Consensus        61 NV~kmL~~lp~~qR~da~~SLvYEA~aR~rDPVyGC~GiI~~Lq~QI~~lqaEL~~vr~eL~~yr~q~  128 (212)
                      |++.-|+......|++.++.||-|+-.+.-|--|=-+-.|..+++-|+.++.+|+.++.+|+.....+
T Consensus        11 ~lf~rlk~a~~~~rD~~Ae~lI~~~~~~qP~a~Y~laQ~vliqE~ALk~a~~~i~eLe~ri~~lq~~~   78 (233)
T COG3416          11 NLFHRLKKAEANERDPQAEALIAEAVAKQPDAAYYLAQRVLIQEQALKKASTQIKELEKRIAILQAGE   78 (233)
T ss_pred             HHHHHHhhcccCCCChHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence            44455667777789999999999999999999999999999999999999999999999988766654

>PF09849 DUF2076: Uncharacterized protein conserved in bacteria (DUF2076); InterPro: IPR018648 This family of hypothetical prokaryotic proteins has no known function but includes putative perimplasmic ligand-binding sensor proteins

Probab=88.48  E-value=4  Score=36.85  Aligned_cols=63  Identities=17%  Similarity=0.244  Sum_probs=56.3

Q ss_pred             hHHHHHhcCCCcchHHHHHHHHHHHhhhcCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 028221           61 NVSKLLSEVPDSQRADAANSLVFEANLRLRDPVYGCLGAISSLQQQVQSLQAELNAMRTEIMK  123 (212)
Q Consensus        61 NV~kmL~~lp~~qR~da~~SLvYEA~aR~rDPVyGC~GiI~~Lq~QI~~lqaEL~~vr~eL~~  123 (212)
                      +++.-|+.+....|+.-++.||-|.-.|.=|=+|=-+-.|..+++=|++++++|+.++.+|..
T Consensus        11 ~lf~RL~~ae~~prD~eAe~lI~~~~~~qP~A~Y~laQ~vlvQE~AL~~a~~ri~eLe~ql~q   73 (247)
T PF09849_consen   11 DLFSRLKQAEAQPRDPEAEALIAQALARQPDAPYYLAQTVLVQEQALKQAQARIQELEAQLQQ   73 (247)
T ss_pred             HHHHHHHhccCCCCCHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            444557777777898999999999999999999999999999999999999999999999876

>PF09006 Surfac_D-trimer: Lung surfactant protein D coiled-coil trimerisation; InterPro: IPR015097 This domain is found in the SFTPD family, which includes lung surfactant protein D (SFTPD), conglutinin, collectin-43 and collectin-46

Probab=86.60  E-value=1.4  Score=30.82  Aligned_cols=28  Identities=32%  Similarity=0.574  Sum_probs=25.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhhhH
Q 028221          100 ISSLQQQVQSLQAELNAMRTEIMKYKYR  127 (212)
Q Consensus       100 I~~Lq~QI~~lqaEL~~vr~eL~~yr~q  127 (212)
                      |..|.+|+..|+.+|..+++.+..|+--
T Consensus         1 i~aLrqQv~aL~~qv~~Lq~~fs~yKKa   28 (46)
T PF09006_consen    1 INALRQQVEALQGQVQRLQAAFSQYKKA   28 (46)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             ChHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            5689999999999999999999998864

It forms a triple-helical parallel coiled coil, and mediates trimerisation of the protein []. ; PDB: 4DN8_A 3G84_A 2RIE_C 3IKR_B 1B08_A 2GGX_B 2OS9_C 2ORK_B 1PWB_A 2RIA_C ....

>PF01213 CAP_N: Adenylate cyclase associated (CAP) N terminal; InterPro: IPR013992 Cyclase-associated proteins (CAPs) are highly conserved actin-binding proteins present in a wide range of organisms including yeast, fly, plants, and mammals

Probab=86.44  E-value=0.84  Score=42.25  Aligned_cols=19  Identities=11%  Similarity=0.156  Sum_probs=10.2

Q ss_pred             HHHHHHHHHHHHHhhhhHHH
Q 028221          110 LQAELNAMRTEIMKYKYREA  129 (212)
Q Consensus       110 lqaEL~~vr~eL~~yr~q~a  129 (212)
                      ++.-+..+ .+|..|..++.
T Consensus       185 vks~~~l~-~~L~~YVke~h  203 (312)
T PF01213_consen  185 VKSFKALL-KELQAYVKEHH  203 (312)
T ss_dssp             HHHHHHHH-HHHHHHHHHHS
T ss_pred             HHHHHHHH-HHHHHHHHHhC
Confidence            33334443 46777766655

CAPs are multifunctional proteins that contain several structural domains. CAP is involved in species-specific signalling pathways [, , , ]. In Drosophila, CAP functions in Hedgehog-mediated eye development and in establishing oocyte polarity. In Dictyostelium (slim mold), CAP is involved in microfilament reorganisation near the plasma membrane in a PIP2-regulated manner and is required to perpetuate the cAMP relay signal to organise fruitbody formation. In plants, CAP is involved in plant signalling pathways required for co-ordinated organ expansion. In yeast, CAP is involved in adenylate cyclase activation, as well as in vesicle trafficking and endocytosis. In both yeast and mammals, CAPs appear to be involved in recycling G-actin monomers from ADF/cofilins for subsequent rounds of filament assembly [, ]. In mammals, there are two different CAPs (CAP1 and CAP2) that share 64% amino acid identity. All CAPs appear to contain a C-terminal actin-binding domain that regulates actin remodelling in response to cellular signals and is required for normal cellular morphology, cell division, growth and locomotion in eukaryotes. CAP directly regulates actin filament dynamics and has been implicated in a number of complex developmental and morphological processes, including mRNA localisation and the establishment of cell polarity. Actin exists both as globular (G) (monomeric) actin subunits and assembled into filamentous (F) actin. In cells, actin cycles between these two forms. Proteins that bind F-actin often regulate F-actin assembly and its interaction with other proteins, while proteins that interact with G-actin often control the availability of unpolymerised actin. CAPs bind G-actin. In addition to actin-binding, CAPs can have additional roles, and may act as bifunctional proteins. In Saccharomyces cerevisiae (Baker's yeast), CAP is a component of the adenylyl cyclase complex (Cyr1p) that serves as an effector of Ras during normal cell signalling. S. cerevisiae CAP functions to expose adenylate cyclase binding sites to Ras, thereby enabling adenylate cyclase to be activated by Ras regulatory signals. In Schizosaccharomyces pombe (Fission yeast), CAP is also required for adenylate cyclase activity, but not through the Ras pathway. In both organisms, the N-terminal domain is responsible for adenylate cyclase activation, but the S cerevisiae and S. pombe N-termini cannot complement one another. Yeast CAPs are unique among the CAP family of proteins, because they are the only ones to directly interact with and activate adenylate cyclase []. S. cerevisiae CAP has four major domains. In addition to the N-terminal adenylate cyclase-interacting domain, and the C-terminal actin-binding domain, it possesses two other domains: a proline-rich domain that interacts with Src homology 3 (SH3) domains of specific proteins, and a domain that is responsible for CAP oligomerisation to form multimeric complexes (although oligomerisation appears to involve the N- and C-terminal domains as well). The proline-rich domain interacts with profilin, a protein that catalyses nucleotide exchange on G-actin monomers and promotes addition to barbed ends of filamentous F-actin []. Since CAP can bind profilin via a proline-rich domain, and G-actin via a C-terminal domain, it has been suggested that a ternary G-actin/CAP/profilin complex could be formed. This entry represents the N-terminal domain of CAP proteins. This domain has an all-alpha structure consisting of six helices in a bundle with a left-handed twist and an up-and-down topology [].; GO: 0003779 actin binding, 0007010 cytoskeleton organization; PDB: 1TJF_B 1S0P_A.

>PLN02523 galacturonosyltransferase

Probab=85.71  E-value=4.9  Score=40.38  Aligned_cols=67  Identities=15%  Similarity=0.193  Sum_probs=52.8

Q ss_pred             HHHhcCCCc--chHHHHHHHHHHHhhhcCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHhhcccCCCC
Q 028221           64 KLLSEVPDS--QRADAANSLVFEANLRLRDPVYGCLGAISSLQQQVQSLQAELNAMRTEIMKYKYREAATASTIISSS  139 (212)
Q Consensus        64 kmL~~lp~~--qR~da~~SLvYEA~aR~rDPVyGC~GiI~~Lq~QI~~lqaEL~~vr~eL~~yr~q~aA~~~~~~p~~  139 (212)
                      ..|++|+.+  +|..+|+.++++|..     .|-|..+|.+|+..|..+++++...+.|-..+.+-.|    .-+|-+
T Consensus       145 ~~~~~~~~~~~~~~k~~~~~~~~a~~-----~~d~~~~~~kl~~~~~~~e~~~~~~~~q~~~~~~laa----~t~PK~  213 (559)
T PLN02523        145 DVLRQFEKEVKERVKVARQMIAESKE-----SFDNQLKIQKLKDTIFAVNEQLTKAKKNGAFASLIAA----KSIPKS  213 (559)
T ss_pred             HHHhhcchhHHHHHHHHHHHHHHHHh-----hcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----hhCCCC
Confidence            345667654  678899999999983     4557789999999999999999999988876655444    667776

>KOG2675 consensus Adenylate cyclase-associated protein (CAP/Srv2p) [Cytoskeleton; Signal transduction mechanisms]

Probab=84.16  E-value=2.5  Score=41.56  Aligned_cols=22  Identities=23%  Similarity=0.253  Sum_probs=12.6

Q ss_pred             HHHHHHHHHHHHHHHHhhhhHHH
Q 028221          107 VQSLQAELNAMRTEIMKYKYREA  129 (212)
Q Consensus       107 I~~lqaEL~~vr~eL~~yr~q~a  129 (212)
                      ++=+++-|+.. .+|..|.-++.
T Consensus       186 veWvKa~l~l~-~eL~~YVk~hh  207 (480)
T KOG2675|consen  186 VEWVKAYLALF-LELQAYVKEHH  207 (480)
T ss_pred             HHHHHHHHHHH-HHHHHHHHHhc
Confidence            33355555544 34777777665

>KOG1924 consensus RhoA GTPase effector DIA/Diaphanous [Signal transduction mechanisms; Cytoskeleton]

Probab=83.67  E-value=5.8  Score=41.91  Aligned_cols=7  Identities=14%  Similarity=0.429  Sum_probs=2.7

Q ss_pred             HHHHHHH
Q 028221           77 AANSLVF   83 (212)
Q Consensus        77 a~~SLvY   83 (212)
                      ++.-||.
T Consensus       431 cISqIvl  437 (1102)
T KOG1924|consen  431 CISQIVL  437 (1102)
T ss_pred             HHHHHHH
Confidence            3333333

>PRK10265 chaperone-modulator protein CbpM; Provisional

Probab=83.60  E-value=2  Score=33.16  Aligned_cols=32  Identities=13%  Similarity=0.255  Sum_probs=29.2

Q ss_pred             chhHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 028221           95 GCLGAISSLQQQVQSLQAELNAMRTEIMKYKY  126 (212)
Q Consensus        95 GC~GiI~~Lq~QI~~lqaEL~~vr~eL~~yr~  126 (212)
                      -.+++|..|-.||+++++|+..++++|..|..
T Consensus        68 ~gialvl~LLd~i~~Lr~el~~L~~~l~~~~~   99 (101)
T PRK10265         68 PGIAVALTLLDEIAHLKQENRLLRQRLSRFVA   99 (101)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            34889999999999999999999999998865

>KOG1924 consensus RhoA GTPase effector DIA/Diaphanous [Signal transduction mechanisms; Cytoskeleton]

Probab=82.41  E-value=2  Score=45.24  Aligned_cols=6  Identities=67%  Similarity=0.678  Sum_probs=2.2

Q ss_pred             HHHHHH
Q 028221          110 LQAELN  115 (212)
Q Consensus       110 lqaEL~  115 (212)
                      .|+||.
T Consensus       493 ~qael~  498 (1102)
T KOG1924|consen  493 AQAELQ  498 (1102)
T ss_pred             HHHHHH
Confidence            333333

>PF06698 DUF1192: Protein of unknown function (DUF1192); InterPro: IPR009579 This family consists of several short, hypothetical, bacterial proteins of around 60 residues in length

Probab=80.96  E-value=4  Score=29.67  Aligned_cols=31  Identities=26%  Similarity=0.409  Sum_probs=26.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhhhHHHH
Q 028221          100 ISSLQQQVQSLQAELNAMRTEIMKYKYREAA  130 (212)
Q Consensus       100 I~~Lq~QI~~lqaEL~~vr~eL~~yr~q~aA  130 (212)
                      |-.|+..|..|++|++.+++++..-+..-+|
T Consensus        23 v~EL~~RIa~L~aEI~R~~~~~~~K~a~r~A   53 (59)
T PF06698_consen   23 VEELEERIALLEAEIARLEAAIAKKSASRAA   53 (59)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            5679999999999999999999987776554

The function of this family is unknown.

>PF11333 DUF3135: Protein of unknown function (DUF3135); InterPro: IPR021482 This family of proteins with unkown function appears to be restricted to Proteobacteria

Probab=80.19  E-value=5.7  Score=30.35  Aligned_cols=66  Identities=17%  Similarity=0.339  Sum_probs=50.1

Q ss_pred             CchhHHHHHHHhhchhhHHHHHhcCCCcc--hHHHHHHHHHHHhhhcCCCCCchhHHHHHHHHHHHHHHHHH
Q 028221           45 HEPQKFAAVHKVFGASNVSKLLSEVPDSQ--RADAANSLVFEANLRLRDPVYGCLGAISSLQQQVQSLQAEL  114 (212)
Q Consensus        45 d~~q~Fa~vhKvFG~sNV~kmL~~lp~~q--R~da~~SLvYEA~aR~rDPVyGC~GiI~~Lq~QI~~lqaEL  114 (212)
                      ++|+.|....+    .-+-.++...+++.  |-.++.+-|=---.|.++|+..|+-+...++.++..+...|
T Consensus        15 ~dPe~fe~lr~----~~~ee~I~~a~~~~q~rL~~lQ~~Id~~~~~~knP~~~~~~l~~~m~~~~~~l~~~l   82 (83)
T PF11333_consen   15 NDPEAFEQLRQ----ELIEEMIESAPEEMQPRLRALQFHIDMQRSRCKNPLHRCVLLSRMMYEQFYKLNDAL   82 (83)
T ss_pred             hCHHHHHHHHH----HHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHHHHhh
Confidence            57888887643    34667888888775  44455555555567889999999999999999998887665

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	212
4dzn_A	33	Coiled-coil peptide CC-PIL; de novo protein; HET:	90.55

>4dzn_A Coiled-coil peptide CC-PIL; de novo protein; HET: PHI; 1.59A {Synthetic} PDB: 4dzm_A* 4dzl_A* 4dzk_A 1u0i_A 1u0i_B

Probab=90.55  E-value=0.36  Score=30.31  Aligned_cols=29  Identities=34%  Similarity=0.594  Sum_probs=25.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 028221           98 GAISSLQQQVQSLQAELNAMRTEIMKYKY  126 (212)
Q Consensus        98 GiI~~Lq~QI~~lqaEL~~vr~eL~~yr~  126 (212)
                      |.|..|+|+|..++.|+++++-||+..++
T Consensus         2 geiaalkqeiaalkkeiaalkfeiaalkq   30 (33)
T 4dzn_A            2 GEIAALKQEIAALKKEIAALKFEIAALKQ   30 (33)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence            77899999999999999999988887664

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00