Citrus Sinensis ID: 028224

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210--
Protein Sequence
MPPIDGSNPYVAHTPAPPSNSFSFKDAVGSVKDVLGRWGKKVGEATKKAEDLAGNTWQHLKTSPSFADAAMGRIAQGTKVLAEGGYEKIFRQTFETVPEEQLQNSYACYLSTSAGPVMGILYVSTAKLAFCSDNPLSYKSSGQTEWSYYKVVIPLHQLRAVNPSSSRNNPAEKYVQVISIDNHEFWFMGFLNYNGAVEWLQGALEARNLESV
Secondary Structure (PSIPRED)
cccccccccEEEccccccccccccccccccHHHHHHccccccccccccHHHHHHHHHHcccccccHHHHHHHHHHHccHHHHcccccEEHHHHcccccHHHHcccccEEEEccccccEEEEEEEEcEEEEEccccccccccccEEEEEEEEEEEcccccccccccccccccccEEEEEEEcccEEEEEEHHcHHHHHHHHHHHHHHHHcccc
Secondary Structure Prediction (SSPRO)
cccccccccEEEEccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHccHHHHHHHHccccccHHHHHHHEHEEccccccEEEEEEEEccEEEEEcccccEEcccccEEEEEEEEEEEHHHHccccccccccccccEEEEEEEEccccEEEEEEEcHHHHHHHHHHHHHHcccccc
Coil and Loop (DISEMBL)
mppidgsnpyvahtpappsnsfsfkdAVGSVKDVLGRWGKKVGEATKKAEDLAgntwqhlktspsfadAAMGRIAQGTKVLAEGGYEKIFRQTfetvpeeqlqNSYAcylstsagpvMGILYVSTAKlafcsdnplsykssgqtewSYYKVVIPlhqlravnpsssrnnpaekYVQVISIDNHEFWFMGFLNYNGAVEWLQGALearnlesv
Flexible Loop (DISEMBL)
MPPIDGSNPYVAHTPAPPSNSFSFKDAVGSVKDVLGRWGKKVGEATKKAEDLAGNTWQHLKTSPSFADAAMGRIAQGTKVLAEGGYEKIFRQTFETVPEEQLQNSYACYLSTSAGPVMGILYVSTAKLAFCSDNPLSYKSSGQTEWSYYKVVIPLHQLRavnpsssrnnpAEKYVQVISIDNHEFWFMGFLNYNGAVEWLQGALEARNLESV
Low Complexity Region (SEG)
MPPIDGSNPYVAHTPAPPSNSFSFKDAVGSVKDVLGRWGKKVGEATKKAEDLAGNTWQHLKTSPSFADAAMGRIAQGTKVLAEGGYEKIFRQTFETVPEEQLQNSYACYLSTSAGPVMGILYVSTAKLAFCSDNPLSYKSSGQTEWSYYKVVIPLHQLRAVNPSSSRNNPAEKYVQVISIDNHEFWFMGFLNYNGAVEWLQGALEARNLESV
Disordered region (IsUnstruct)
***************************VGSVKDVLGRWGKKVGE******DLAGNTWQHLKTSPSFADAAMGRIAQGTKVLAEGGYEKIFRQTFETVPEEQLQNSYACYLSTSAGPVMGILYVSTAKLAFCSDNPLSYKSSGQTEWSYYKVVIPLHQLRAV***********KYVQVISIDNHEFWFMGFLNYNGAVEWLQGAL********
Disordered Region (DISOPRED)
*****************************************************GNTWQHLKTSPSFADAAMGRIAQGTKVLAEGGYEKIFRQTFETVPEEQLQNSYACYLSTSAGPVMGILYVSTAKLAFCSDNPL*Y**SGQTEWSYYKVVIPLH*******************QVISIDNHEFWFMGFLNYNGAVEWLQGAL********
Disordered Region (DISEMBL)
MPPIDGSNPYVAHTPAPPSNSFSFKDAVGSVKDVLGRWGKKVGEATKKAEDLAGNTWQHLKTSPSFADAAMGRIAQGTKVLAEGGYEKIFRQTFETVPEEQLQNSYACYLSTSAGPVMGILYVSTAKLAFCSDNPLSYKSSGQTEWSYYKVVIPLHQLRAVNPSSSRNNPAEKYVQVISIDNHEFWFMGFLNYNGAVEWLQGALEARNLESV
Disordered Region (DISPRO)
*****GSNPYVAHTPAPPSNSFSFKDAVGSVKDVLGRWGKKVGEATKKAEDLAGNTWQHLKTSPSFADAAMGRIAQGTKVLAEGGYEKIFRQTFETVPEEQLQNSYACYLSTSAGPVMGILYVSTAKLAFCSDNPLSYKSSGQTEWSYYKVVIPLHQLRAVNPSSSRNNPAEKYVQVISIDNHEFWFMGFLNYNGAVEWLQGALEAR*****
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MPPIDGSNPYVAHTPAPPSNSFSFKDAVGSVKDVLGRWGKKVGEATKKAEDLAGNTWQHLKTSPSFADAAMGRIAQGTKVLAEGGYEKIFRQTFETVPEEQLQNSYACYLSTSAGPVMGILYVSTAKLAFCSDNPLSYKSSGQTEWSYYKVVIPLHQLRAVNPSSSRNNPAEKYVQVISIDNHEFWFMGFLNYNGAVEWLQGALEARNLESV
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	212	2.2.26 [Sep-21-2011]
Q8S8F8	299	GLABRA2 expression modula	yes	no	0.962	0.682	0.765	2e-91
Q9SE96	259	GEM-like protein 1 OS=Ara	no	no	0.915	0.749	0.661	5e-77
Q9M063	239	Putative GEM-like protein	no	no	0.834	0.740	0.69	5e-72
Q9M122	233	GEM-like protein 2 OS=Ara	no	no	0.915	0.832	0.447	2e-43
Q9LYV6	272	GEM-like protein 5 OS=Ara	no	no	0.853	0.665	0.427	4e-43
Q9FMW4	219	Putative GEM-like protein	no	no	0.834	0.808	0.359	9e-32
Q9FMW6	218	GEM-like protein 6 OS=Ara	no	no	0.745	0.724	0.377	1e-31
Q9FTA0	222	GEM-like protein 4 OS=Ara	no	no	0.872	0.833	0.358	3e-31
Q9FMW5	210	GEM-like protein 7 OS=Ara	no	no	0.745	0.752	0.358	4e-30

>sp|Q8S8F8|GEM_ARATH GLABRA2 expression modulator OS=Arabidopsis thaliana GN=GEM PE=1 SV=1

 Score =  335 bits (858), Expect = 2e-91,   Method: Compositional matrix adjust.
 Identities = 157/205 (76%), Positives = 179/205 (87%), Gaps = 1/205 (0%)

Query: 8   NPYVAHTPAPPSNSFSFKDAVGSVKDVLGRWGKKVGEATKKAEDLAGNTWQHLKTSPSFA 67
           NPY+A +PA  S++ S KD + +VK VLGRWGK+V EA KK E LAGNTWQHL+T+PSFA
Sbjct: 96  NPYIARSPAETSDA-SLKDTMETVKGVLGRWGKRVAEAAKKTESLAGNTWQHLRTAPSFA 154

Query: 68  DAAMGRIAQGTKVLAEGGYEKIFRQTFETVPEEQLQNSYACYLSTSAGPVMGILYVSTAK 127
           DAAMGRIAQ TKV AEGGYEKIFRQTFET PEEQL NS+ACYLSTSAGPVMG+LY+S+AK
Sbjct: 155 DAAMGRIAQSTKVFAEGGYEKIFRQTFETDPEEQLLNSFACYLSTSAGPVMGVLYISSAK 214

Query: 128 LAFCSDNPLSYKSSGQTEWSYYKVVIPLHQLRAVNPSSSRNNPAEKYVQVISIDNHEFWF 187
           LA+CSDNPLSYK+  QTEWSYYKVVIPLHQL+AVNPS+S  NPAEKY+QVIS+DNHEFWF
Sbjct: 215 LAYCSDNPLSYKNGDQTEWSYYKVVIPLHQLKAVNPSASIVNPAEKYIQVISVDNHEFWF 274

Query: 188 MGFLNYNGAVEWLQGALEARNLESV 212
           MGFLNY+GAV  LQ +L+A  L SV
Sbjct: 275 MGFLNYDGAVTSLQDSLQAGALRSV 299

Involved in the spatial control of cell division, patterning and differentiation of Arabidopsis root epidermal cells. Could be part of a complex that negatively modulates GLABRA2 and CAPRICE expression via the maintenance of a repressor histone H3 epigenetics status of the GL2 and CPC promoters.
Arabidopsis thaliana (taxid: 3702)

>sp|Q9SE96|GEML1_ARATH GEM-like protein 1 OS=Arabidopsis thaliana GN=FIP1 PE=1 SV=1

 Score =  286 bits (733), Expect = 5e-77,   Method: Compositional matrix adjust.
 Identities = 133/201 (66%), Positives = 165/201 (82%), Gaps = 7/201 (3%)

Query: 7   SNPYVAHTPAPPSNSFSFKDAVGSVKDVLGRWGKKVGEATKKAEDLAGNTWQHLKTSPSF 66
           SNPYV+ +PAP       ++ + SVKD LG+WGK   +ATKKAEDLAGN WQHLKT PS 
Sbjct: 64  SNPYVSPSPAP-------RNTMDSVKDTLGKWGKMAADATKKAEDLAGNFWQHLKTGPSV 116

Query: 67  ADAAMGRIAQGTKVLAEGGYEKIFRQTFETVPEEQLQNSYACYLSTSAGPVMGILYVSTA 126
           ADAA+ RIAQGTK+LAEGGYEK+F+QTF+ +P+E+L  +YACYLSTSAGPV+G++Y+ST 
Sbjct: 117 ADAAVSRIAQGTKILAEGGYEKVFKQTFDCLPDEKLLKTYACYLSTSAGPVLGVMYLSTH 176

Query: 127 KLAFCSDNPLSYKSSGQTEWSYYKVVIPLHQLRAVNPSSSRNNPAEKYVQVISIDNHEFW 186
           KLAF SDNPLSYK   QT WSYYKVV+P +QL+AVNPS+SR N ++KY+QVISIDNHEFW
Sbjct: 177 KLAFSSDNPLSYKEGEQTLWSYYKVVLPANQLKAVNPSTSRVNTSDKYIQVISIDNHEFW 236

Query: 187 FMGFLNYNGAVEWLQGALEAR 207
           FMGF+ Y  AV+ LQ A+++ 
Sbjct: 237 FMGFVTYESAVKSLQEAVQSH 257

Arabidopsis thaliana (taxid: 3702)

>sp|Q9M063|GEML3_ARATH Putative GEM-like protein 3 OS=Arabidopsis thaliana GN=At4g40100 PE=3 SV=2

 Score =  270 bits (690), Expect = 5e-72,   Method: Compositional matrix adjust.
 Identities = 138/200 (69%), Positives = 154/200 (77%), Gaps = 23/200 (11%)

Query: 8   NPYVAHTPAPPSNSFSFKDAVGSVKDVLGRWGKKVGEATKKAEDLAGNTWQH-LKTSPSF 66
           NPYVA  P   S++ S K+ + SVK VLGRWG++VGEA  KAE LAGNTWQH L+     
Sbjct: 55  NPYVARAPTETSDA-SLKETMESVKGVLGRWGRRVGEAAMKAESLAGNTWQHPLR----- 108

Query: 67  ADAAMGRIAQGTKVLAEGGYEKIFRQTFETVPEEQLQNSYACYLSTSAGPVMGILYVSTA 126
             AAMGRIAQ TKVLAEGGYEKIFRQTFETVPEEQLQNS+ACYLSTSAGPVMG+LYVSTA
Sbjct: 109 --AAMGRIAQSTKVLAEGGYEKIFRQTFETVPEEQLQNSFACYLSTSAGPVMGVLYVSTA 166

Query: 127 KLAFCSDNPLSYKSSGQTEWSYYKVVIPLHQLRAVNPSSSRNNPAEKYVQVISIDNHEFW 186
           KLA+CSD  L              VVIPLHQL++VNPS S  NPAEKY+QVIS+D+HEFW
Sbjct: 167 KLAYCSDTSL--------------VVIPLHQLKSVNPSISTVNPAEKYIQVISVDDHEFW 212

Query: 187 FMGFLNYNGAVEWLQGALEA 206
           FMGFLNY GAV  LQ  L+A
Sbjct: 213 FMGFLNYEGAVTSLQDTLQA 232

Arabidopsis thaliana (taxid: 3702)

>sp|Q9M122|GEML2_ARATH GEM-like protein 2 OS=Arabidopsis thaliana GN=At4g01600 PE=2 SV=1

 Score =  175 bits (444), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 89/199 (44%), Positives = 132/199 (66%), Gaps = 5/199 (2%)

Query: 8   NPYVAHTPAPPSNSFSFKDAVGSVKDVLGRWGKKVGEATKKAEDLAGNTWQHLKTSPSFA 67
           NPYV H  +P S S   K +   V +VL R GKKV +AT+KAE L G    HLK SPS +
Sbjct: 29  NPYV-HITSPTSASD--KRSKDKVLEVLNRCGKKVEDATRKAEALVGGLKDHLKFSPSIS 85

Query: 68  DAAMGRIAQGTKVLAEGGYEKIFRQTFETVPEEQLQNSYACYLSTSAGPVMGILYVSTAK 127
           DAAM R++QGTK++ EGG E++F++ F  +  E+L +S+ CY+ST++GPV G++Y+S  +
Sbjct: 86  DAAMARLSQGTKMIVEGGPERVFQREFGVLAVEKLLDSFVCYISTTSGPVTGVIYISNRR 145

Query: 128 LAFCSDNPLSYKSS--GQTEWSYYKVVIPLHQLRAVNPSSSRNNPAEKYVQVISIDNHEF 185
           +AFCSD  +   SS  G    +YYKVV+   ++ +++ S++   P+E+YV +++ D  EF
Sbjct: 146 IAFCSDYAIRLPSSAGGNGVAAYYKVVMEWEKISSISSSTNVLKPSERYVHMVTRDGFEF 205

Query: 186 WFMGFLNYNGAVEWLQGAL 204
           WFMGF++Y  A   L  AL
Sbjct: 206 WFMGFVSYIDAFNCLNKAL 224

Arabidopsis thaliana (taxid: 3702)

>sp|Q9LYV6|GEML5_ARATH GEM-like protein 5 OS=Arabidopsis thaliana GN=At5g13200 PE=1 SV=1

 Score =  174 bits (441), Expect = 4e-43,   Method: Compositional matrix adjust.
 Identities = 83/194 (42%), Positives = 122/194 (62%), Gaps = 13/194 (6%)

Query: 9   PYVAHTPAP-PSNSFSFKDAVGSVKDVLGRWGKKVGEATKKAEDLAGNTWQHLKTSPSFA 67
           PYV ++P   P+ +   +  +G    +   W       ++KAE +A N W +LKT PS +
Sbjct: 74  PYVIYSPVEHPTTNNPLEPVIG----MFHTW-------SRKAETVARNLWHNLKTGPSMS 122

Query: 68  DAAMGRIAQGTKVLAEGGYEKIFRQTFETVPEEQLQNSYACYLSTSAGPVMGILYVSTAK 127
           + A G++    K + +GG+E +FRQ F T P E L+ ++ACYLST+ GPV G +Y+S A+
Sbjct: 123 ETAWGKVNLTAKAITKGGFESLFRQIFGTEPNETLKKTFACYLSTTTGPVAGTVYLSNAR 182

Query: 128 LAFCSDNPLSYKS-SGQTEWSYYKVVIPLHQLRAVNPSSSRNNPAEKYVQVISIDNHEFW 186
           +AFCSD PL + + SGQ  WSYY+VV+PL  +  VNP   +  P EKY+Q+ ++D H+FW
Sbjct: 183 VAFCSDRPLYFTAPSGQESWSYYRVVVPLANVATVNPVVVKETPPEKYIQLTTVDGHDFW 242

Query: 187 FMGFLNYNGAVEWL 200
           FMGF+NY  A   L
Sbjct: 243 FMGFVNYEKATHHL 256

Arabidopsis thaliana (taxid: 3702)

>sp|Q9FMW4|GEML8_ARATH Putative GEM-like protein 8 OS=Arabidopsis thaliana GN=At5g23370 PE=3 SV=1

 Score =  136 bits (343), Expect = 9e-32,   Method: Compositional matrix adjust.
 Identities = 68/189 (35%), Positives = 108/189 (57%), Gaps = 12/189 (6%)

Query: 17  PPSNSFSFKDAVGSVKDVLGRWGKKVGEATKKAEDLAGNTWQHLKTSPSFADAAMGRIAQ 76
           P S+ FSF    G  K +L +         KK +          K  P   +    +++ 
Sbjct: 36  PTSSKFSF--LTGKGKSMLRK---------KKNDSFTNGVRDQDKLGPKLTETVKRKLSL 84

Query: 77  GTKVLAEGGYEKIFRQTFETVPEEQLQNSYACYLSTSAGPVMGILYVSTAKLAFCSDNPL 136
           G ++L  GG EKI+++ F+   EE+L  +Y CYLST+AGP+ G+L++S+ K+AFCS+  +
Sbjct: 85  GARILQMGGLEKIYKRLFKVSDEEKLFKAYQCYLSTTAGPIAGLLFISSKKIAFCSERSI 144

Query: 137 SYKS-SGQTEWSYYKVVIPLHQLRAVNPSSSRNNPAEKYVQVISIDNHEFWFMGFLNYNG 195
              S  G+    +YKV IPL ++  VN S +   P++KY++V+++D  +FWFMGFL+Y  
Sbjct: 145 KVASPQGELNRVHYKVSIPLCKINGVNQSQNTTKPSQKYLEVVTVDGFDFWFMGFLSYQK 204

Query: 196 AVEWLQGAL 204
           A   L+ AL
Sbjct: 205 AFNCLEQAL 213

Arabidopsis thaliana (taxid: 3702)

>sp|Q9FMW6|GEML6_ARATH GEM-like protein 6 OS=Arabidopsis thaliana GN=At5g23350 PE=2 SV=2

 Score =  136 bits (342), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 60/159 (37%), Positives = 97/159 (61%), Gaps = 1/159 (0%)

Query: 47  KKAEDLAGNTWQHLKTSPSFADAAMGRIAQGTKVLAEGGYEKIFRQTFETVPEEQLQNSY 106
           KK +          K  P   +    +++ G K+L  GG EKI+++ F+   +E+L  +Y
Sbjct: 55  KKTDSFTNGARDQDKLGPKLTETVKRKLSLGAKILQMGGLEKIYKRLFKVCDQEKLFKAY 114

Query: 107 ACYLSTSAGPVMGILYVSTAKLAFCSDNPLSYKS-SGQTEWSYYKVVIPLHQLRAVNPSS 165
            CYLST+AGP+ G+L++S+ K+AFCS+  +   S  G     +YKV IPL ++  VN S 
Sbjct: 115 QCYLSTTAGPIAGLLFISSKKIAFCSERSIKVASPQGVLSRVHYKVSIPLCKINGVNQSQ 174

Query: 166 SRNNPAEKYVQVISIDNHEFWFMGFLNYNGAVEWLQGAL 204
           +   P++KY+++++IDN +FWFMGF++Y  A   L+ AL
Sbjct: 175 NTKKPSQKYLEIVTIDNFDFWFMGFVSYQKAFNCLEKAL 213

Arabidopsis thaliana (taxid: 3702)

>sp|Q9FTA0|GEML4_ARATH GEM-like protein 4 OS=Arabidopsis thaliana GN=At5g08350 PE=2 SV=1

 Score =  134 bits (338), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 72/201 (35%), Positives = 108/201 (53%), Gaps = 16/201 (7%)

Query: 11  VAHTPAPPS-NSF-----SFKDAVGSVKDVLGRWGKKVGEATKKAEDLAGNTWQHLKTSP 64
           V + P P S N F     S K    +VK +L R         KK +          K  P
Sbjct: 21  VGYLPDPASFNKFRVPASSKKSEQSNVKSILKR---------KKTDGFTNGVRDQSKIRP 71

Query: 65  SFADAAMGRIAQGTKVLAEGGYEKIFRQTFETVPEEQLQNSYACYLSTSAGPVMGILYVS 124
              +    +++ G ++L  GG EKIF++ F     E+L   Y CYLST+AGP+ G+L++S
Sbjct: 72  KLTETVKRKLSLGARILQVGGLEKIFKRLFRVSEGEKLFKMYQCYLSTTAGPIAGLLFIS 131

Query: 125 TAKLAFCSDNPLSYKS-SGQTEWSYYKVVIPLHQLRAVNPSSSRNNPAEKYVQVISIDNH 183
           + K+AFCS+  +   S  G     +YKV IPL ++  VN S +   P++KY++V+++D  
Sbjct: 132 SKKMAFCSERSIKVDSPQGDIIRVHYKVSIPLCKIDRVNQSQNTKKPSQKYLEVVTVDGF 191

Query: 184 EFWFMGFLNYNGAVEWLQGAL 204
           +FWFMGFL+Y  A   L+ AL
Sbjct: 192 DFWFMGFLSYQKAFNCLEKAL 212

Arabidopsis thaliana (taxid: 3702)

>sp|Q9FMW5|GEML7_ARATH GEM-like protein 7 OS=Arabidopsis thaliana GN=At5g23360 PE=2 SV=1

 Score =  130 bits (328), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 57/159 (35%), Positives = 96/159 (60%), Gaps = 1/159 (0%)

Query: 47  KKAEDLAGNTWQHLKTSPSFADAAMGRIAQGTKVLAEGGYEKIFRQTFETVPEEQLQNSY 106
           KK +          K  P   +    +++ G K+L  GG EKI+++ F+   +E+L  +Y
Sbjct: 47  KKTDSFTNGARDQDKLGPKLTETVKRKLSLGAKILQMGGLEKIYKRLFKVCDKEKLFKAY 106

Query: 107 ACYLSTSAGPVMGILYVSTAKLAFCSDNPLSYKS-SGQTEWSYYKVVIPLHQLRAVNPSS 165
            CYLST+ G + G+L++S+ K+AFCS+  +   S  G     +YKV IPL ++  VN S 
Sbjct: 107 QCYLSTTEGSIAGLLFISSKKIAFCSERSIKVTSPQGDLTRVHYKVSIPLCKINGVNQSQ 166

Query: 166 SRNNPAEKYVQVISIDNHEFWFMGFLNYNGAVEWLQGAL 204
           +   P+++Y++V+++DN++FWFMGF++Y  A   L+ AL
Sbjct: 167 NTKKPSQRYLEVVTVDNYDFWFMGFVSYQKAFNCLEKAL 205

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	212
255587566	313	conserved hypothetical protein [Ricinus	0.981	0.664	0.857	2e-96
297798054	309	hypothetical protein ARALYDRAFT_353023 [	0.962	0.660	0.790	9e-93
297821471	291	hypothetical protein ARALYDRAFT_481108 [	0.962	0.701	0.775	6e-90
18399985	299	GLABRA2 expression modulator [Arabidopsi	0.962	0.682	0.765	1e-89
21592789	299	unknown [Arabidopsis thaliana]	0.962	0.682	0.760	7e-89
26452129	299	unknown protein [Arabidopsis thaliana]	0.962	0.682	0.760	1e-88
449451401	294	PREDICTED: GLABRA2 expression modulator-	0.971	0.700	0.800	9e-88
356566022	280	PREDICTED: GLABRA2 expression modulator-	0.966	0.732	0.737	1e-84
449469813	302	PREDICTED: GEM-like protein 1-like [Cucu	0.948	0.665	0.737	4e-83
357465343	258	GLABRA2 expression modulator [Medicago t	0.938	0.771	0.766	5e-82

>gi|255587566|ref|XP_002534314.1| conserved hypothetical protein [Ricinus communis] gi|223525515|gb|EEF28070.1| conserved hypothetical protein [Ricinus communis]

 Score =  357 bits (916), Expect = 2e-96,   Method: Compositional matrix adjust.
 Identities = 181/211 (85%), Positives = 195/211 (92%), Gaps = 3/211 (1%)

Query: 4   IDGSNPYVAHTPAPPSNSFSF--KDAVGSVKDVLGRWGKKVGEATKKAEDLAGNTWQHLK 61
            DGSNPYV+ +PA  S+S SF  KD +GSV+DVLG  GKKVGEATKKAEDLAGNTWQHLK
Sbjct: 104 FDGSNPYVSSSPAQASSSSSFSFKDTMGSVRDVLGS-GKKVGEATKKAEDLAGNTWQHLK 162

Query: 62  TSPSFADAAMGRIAQGTKVLAEGGYEKIFRQTFETVPEEQLQNSYACYLSTSAGPVMGIL 121
           TSPSF DAA+GRIAQGTKVLAEGGYEKIFRQTFETVPEEQLQNSYACYLSTSAGPVMGIL
Sbjct: 163 TSPSFTDAALGRIAQGTKVLAEGGYEKIFRQTFETVPEEQLQNSYACYLSTSAGPVMGIL 222

Query: 122 YVSTAKLAFCSDNPLSYKSSGQTEWSYYKVVIPLHQLRAVNPSSSRNNPAEKYVQVISID 181
           YVSTAKLAFCSDNPLSYK+SGQTEWSYYKVVIPLHQL+AVNPSSSR NPAEKYVQVIS+D
Sbjct: 223 YVSTAKLAFCSDNPLSYKNSGQTEWSYYKVVIPLHQLKAVNPSSSRTNPAEKYVQVISVD 282

Query: 182 NHEFWFMGFLNYNGAVEWLQGALEARNLESV 212
           NHEFWFMGFLNY+GAV+ LQ  L+A +L+SV
Sbjct: 283 NHEFWFMGFLNYDGAVKCLQDGLQAHSLQSV 313

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297798054|ref|XP_002866911.1| hypothetical protein ARALYDRAFT_353023 [Arabidopsis lyrata subsp. lyrata] gi|297312747|gb|EFH43170.1| hypothetical protein ARALYDRAFT_353023 [Arabidopsis lyrata subsp. lyrata]

 Score =  345 bits (884), Expect = 9e-93,   Method: Compositional matrix adjust.
 Identities = 162/205 (79%), Positives = 183/205 (89%), Gaps = 1/205 (0%)

Query: 8   NPYVAHTPAPPSNSFSFKDAVGSVKDVLGRWGKKVGEATKKAEDLAGNTWQHLKTSPSFA 67
           NPYVA  PA  S++ S K+ + +VK VLGRWG++VGEA  KAE LAGNTWQHLKT+PSFA
Sbjct: 106 NPYVARAPAETSDA-SLKETMETVKGVLGRWGRRVGEAAMKAESLAGNTWQHLKTAPSFA 164

Query: 68  DAAMGRIAQGTKVLAEGGYEKIFRQTFETVPEEQLQNSYACYLSTSAGPVMGILYVSTAK 127
           DAAMGRIAQ TKVLAEGGYEKIFRQTFETVPEEQLQNS+ACYLSTSAGPVMG+LY+STAK
Sbjct: 165 DAAMGRIAQSTKVLAEGGYEKIFRQTFETVPEEQLQNSFACYLSTSAGPVMGVLYISTAK 224

Query: 128 LAFCSDNPLSYKSSGQTEWSYYKVVIPLHQLRAVNPSSSRNNPAEKYVQVISIDNHEFWF 187
           LA+CSDNPLSYK+SGQTEWSYYKVVIPLHQL++VNPS+S  NPAEKY+QVIS+D+HEFWF
Sbjct: 225 LAYCSDNPLSYKNSGQTEWSYYKVVIPLHQLKSVNPSASIVNPAEKYIQVISVDDHEFWF 284

Query: 188 MGFLNYNGAVEWLQGALEARNLESV 212
           MGFLNY GAV  LQ  L+A  L+SV
Sbjct: 285 MGFLNYEGAVTALQDTLQAGALQSV 309

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297821471|ref|XP_002878618.1| hypothetical protein ARALYDRAFT_481108 [Arabidopsis lyrata subsp. lyrata] gi|297324457|gb|EFH54877.1| hypothetical protein ARALYDRAFT_481108 [Arabidopsis lyrata subsp. lyrata]

 Score =  335 bits (860), Expect = 6e-90,   Method: Compositional matrix adjust.
 Identities = 159/205 (77%), Positives = 177/205 (86%), Gaps = 1/205 (0%)

Query: 8   NPYVAHTPAPPSNSFSFKDAVGSVKDVLGRWGKKVGEATKKAEDLAGNTWQHLKTSPSFA 67
           NPY+A +PA  S+  S  D + SVK VLGRWGKKV EA KK E LAGNTWQHL+T+PSFA
Sbjct: 88  NPYIARSPAETSSDASL-DTMESVKGVLGRWGKKVAEAAKKTESLAGNTWQHLRTAPSFA 146

Query: 68  DAAMGRIAQGTKVLAEGGYEKIFRQTFETVPEEQLQNSYACYLSTSAGPVMGILYVSTAK 127
           DAAMGRIAQ TKV AEGGYEKIFRQTFETVPEEQL NS+ACYLSTSAGPVMG++Y+STAK
Sbjct: 147 DAAMGRIAQSTKVFAEGGYEKIFRQTFETVPEEQLLNSFACYLSTSAGPVMGVVYISTAK 206

Query: 128 LAFCSDNPLSYKSSGQTEWSYYKVVIPLHQLRAVNPSSSRNNPAEKYVQVISIDNHEFWF 187
           LA+CSDNPLSYK+  QTEWSYYKVVIPLHQL+AVNPS+S  NPAEKY+QVIS+DNHEFWF
Sbjct: 207 LAYCSDNPLSYKNGDQTEWSYYKVVIPLHQLKAVNPSTSIVNPAEKYIQVISVDNHEFWF 266

Query: 188 MGFLNYNGAVEWLQGALEARNLESV 212
           MGFLNY GAV  LQ +L+A  L SV
Sbjct: 267 MGFLNYEGAVTSLQDSLQAGALRSV 291

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|18399985|ref|NP_565538.1| GLABRA2 expression modulator [Arabidopsis thaliana] gi|75160436|sp|Q8S8F8.1|GEM_ARATH RecName: Full=GLABRA2 expression modulator gi|20197888|gb|AAM15301.1| Expressed protein [Arabidopsis thaliana] gi|145076288|gb|ABP35534.1| GL2 expression modulator [Arabidopsis thaliana] gi|330252217|gb|AEC07311.1| GLABRA2 expression modulator [Arabidopsis thaliana]

 Score =  335 bits (858), Expect = 1e-89,   Method: Compositional matrix adjust.
 Identities = 157/205 (76%), Positives = 179/205 (87%), Gaps = 1/205 (0%)

Query: 8   NPYVAHTPAPPSNSFSFKDAVGSVKDVLGRWGKKVGEATKKAEDLAGNTWQHLKTSPSFA 67
           NPY+A +PA  S++ S KD + +VK VLGRWGK+V EA KK E LAGNTWQHL+T+PSFA
Sbjct: 96  NPYIARSPAETSDA-SLKDTMETVKGVLGRWGKRVAEAAKKTESLAGNTWQHLRTAPSFA 154

Query: 68  DAAMGRIAQGTKVLAEGGYEKIFRQTFETVPEEQLQNSYACYLSTSAGPVMGILYVSTAK 127
           DAAMGRIAQ TKV AEGGYEKIFRQTFET PEEQL NS+ACYLSTSAGPVMG+LY+S+AK
Sbjct: 155 DAAMGRIAQSTKVFAEGGYEKIFRQTFETDPEEQLLNSFACYLSTSAGPVMGVLYISSAK 214

Query: 128 LAFCSDNPLSYKSSGQTEWSYYKVVIPLHQLRAVNPSSSRNNPAEKYVQVISIDNHEFWF 187
           LA+CSDNPLSYK+  QTEWSYYKVVIPLHQL+AVNPS+S  NPAEKY+QVIS+DNHEFWF
Sbjct: 215 LAYCSDNPLSYKNGDQTEWSYYKVVIPLHQLKAVNPSASIVNPAEKYIQVISVDNHEFWF 274

Query: 188 MGFLNYNGAVEWLQGALEARNLESV 212
           MGFLNY+GAV  LQ +L+A  L SV
Sbjct: 275 MGFLNYDGAVTSLQDSLQAGALRSV 299

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|21592789|gb|AAM64738.1| unknown [Arabidopsis thaliana]

 Score =  332 bits (851), Expect = 7e-89,   Method: Compositional matrix adjust.
 Identities = 156/205 (76%), Positives = 178/205 (86%), Gaps = 1/205 (0%)

Query: 8   NPYVAHTPAPPSNSFSFKDAVGSVKDVLGRWGKKVGEATKKAEDLAGNTWQHLKTSPSFA 67
           NPY+A +PA  S++ S KD + +VK VLGRWGK+V EA KK E LAGNTWQ L+T+PSFA
Sbjct: 96  NPYIARSPAETSDA-SLKDTMETVKGVLGRWGKRVAEAAKKTESLAGNTWQQLRTAPSFA 154

Query: 68  DAAMGRIAQGTKVLAEGGYEKIFRQTFETVPEEQLQNSYACYLSTSAGPVMGILYVSTAK 127
           DAAMGRIAQ TKV AEGGYEKIFRQTFET PEEQL NS+ACYLSTSAGPVMG+LY+S+AK
Sbjct: 155 DAAMGRIAQSTKVFAEGGYEKIFRQTFETDPEEQLLNSFACYLSTSAGPVMGVLYISSAK 214

Query: 128 LAFCSDNPLSYKSSGQTEWSYYKVVIPLHQLRAVNPSSSRNNPAEKYVQVISIDNHEFWF 187
           LA+CSDNPLSYK+  QTEWSYYKVVIPLHQL+AVNPS+S  NPAEKY+QVIS+DNHEFWF
Sbjct: 215 LAYCSDNPLSYKNGDQTEWSYYKVVIPLHQLKAVNPSASIVNPAEKYIQVISVDNHEFWF 274

Query: 188 MGFLNYNGAVEWLQGALEARNLESV 212
           MGFLNY+GAV  LQ +L+A  L SV
Sbjct: 275 MGFLNYDGAVTSLQDSLQAGALRSV 299

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|26452129|dbj|BAC43153.1| unknown protein [Arabidopsis thaliana]

 Score =  331 bits (848), Expect = 1e-88,   Method: Compositional matrix adjust.
 Identities = 156/205 (76%), Positives = 178/205 (86%), Gaps = 1/205 (0%)

Query: 8   NPYVAHTPAPPSNSFSFKDAVGSVKDVLGRWGKKVGEATKKAEDLAGNTWQHLKTSPSFA 67
           NPY+A +PA  S++ S KD + +VK VLGRWGK+V EA KK E LAGNTWQHL+T+PSFA
Sbjct: 96  NPYIARSPAETSDA-SLKDTMETVKGVLGRWGKRVAEAAKKTESLAGNTWQHLRTAPSFA 154

Query: 68  DAAMGRIAQGTKVLAEGGYEKIFRQTFETVPEEQLQNSYACYLSTSAGPVMGILYVSTAK 127
           DAAMGRIAQ TKV AEGGYEKIFRQTFET PEEQL NS+ACYLSTSAG VMG+LY+S+AK
Sbjct: 155 DAAMGRIAQSTKVFAEGGYEKIFRQTFETDPEEQLLNSFACYLSTSAGLVMGVLYISSAK 214

Query: 128 LAFCSDNPLSYKSSGQTEWSYYKVVIPLHQLRAVNPSSSRNNPAEKYVQVISIDNHEFWF 187
           LA+CSDNPLSYK+  QTEWSYYKVVIPLHQL+AVNPS+S  NPAEKY+QVIS+DNHEFWF
Sbjct: 215 LAYCSDNPLSYKNGDQTEWSYYKVVIPLHQLKAVNPSASIVNPAEKYIQVISVDNHEFWF 274

Query: 188 MGFLNYNGAVEWLQGALEARNLESV 212
           MGFLNY+GAV  LQ +L+A  L SV
Sbjct: 275 MGFLNYDGAVTSLQDSLQAGALRSV 299

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449451401|ref|XP_004143450.1| PREDICTED: GLABRA2 expression modulator-like [Cucumis sativus] gi|449499787|ref|XP_004160917.1| PREDICTED: GLABRA2 expression modulator-like [Cucumis sativus]

 Score =  328 bits (841), Expect = 9e-88,   Method: Compositional matrix adjust.
 Identities = 165/206 (80%), Positives = 184/206 (89%)

Query: 7   SNPYVAHTPAPPSNSFSFKDAVGSVKDVLGRWGKKVGEATKKAEDLAGNTWQHLKTSPSF 66
           +N Y A +P+ PS+S SFK+ V SV   LGRWGKKVGEATKKAEDLAGNTWQHLKTSPSF
Sbjct: 89  TNTYAASSPSSPSSSVSFKETVDSVWSALGRWGKKVGEATKKAEDLAGNTWQHLKTSPSF 148

Query: 67  ADAAMGRIAQGTKVLAEGGYEKIFRQTFETVPEEQLQNSYACYLSTSAGPVMGILYVSTA 126
           ADAA+GRIAQGTKVLAEGGYEKIF+QTF+TVPEE+LQNS+ACYLSTSAGPVMG+LYVSTA
Sbjct: 149 ADAALGRIAQGTKVLAEGGYEKIFQQTFDTVPEEKLQNSFACYLSTSAGPVMGVLYVSTA 208

Query: 127 KLAFCSDNPLSYKSSGQTEWSYYKVVIPLHQLRAVNPSSSRNNPAEKYVQVISIDNHEFW 186
           KLA+CSDNPLSYKS G+TEWSYYKVVIPL QL+AVNPSSS  NP+EKY+QVIS DNHEFW
Sbjct: 209 KLAYCSDNPLSYKSDGRTEWSYYKVVIPLQQLKAVNPSSSGMNPSEKYIQVISGDNHEFW 268

Query: 187 FMGFLNYNGAVEWLQGALEARNLESV 212
           FMGFLNYNGAVE L    E + ++SV
Sbjct: 269 FMGFLNYNGAVECLLEFPELQAMQSV 294

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356566022|ref|XP_003551234.1| PREDICTED: GLABRA2 expression modulator-like [Glycine max]

 Score =  318 bits (815), Expect = 1e-84,   Method: Compositional matrix adjust.
 Identities = 152/206 (73%), Positives = 179/206 (86%), Gaps = 1/206 (0%)

Query: 7   SNPYVAHTPAPPSNSFSFKDAVGSVKDVLGRWGKKVGEATKKAEDLAGNTWQHLKTSPSF 66
           SNPY + + +      +F + V +V++VLGRWG+K  EATKKAE LAGNTWQHLKTSPSF
Sbjct: 73  SNPYFSSSSSFSQPPPTFMETVVTVRNVLGRWGRKAAEATKKAESLAGNTWQHLKTSPSF 132

Query: 67  ADAAMGRIAQGTKVLAEGGYEKIFRQTFETVPEEQLQNSYACYLSTSAGPVMGILYVSTA 126
           A+AAMGRIAQGTKVLAEGGYEKIF  TFETVPEE+L NSYACYLSTSAGPVMG+LYVSTA
Sbjct: 133 AEAAMGRIAQGTKVLAEGGYEKIFLNTFETVPEERLLNSYACYLSTSAGPVMGVLYVSTA 192

Query: 127 KLAFCSDNPLSYKSSGQTEWSYYKVVIPLHQLRAVNPSSSRNNPAEKYVQVISIDNHEFW 186
           K+A+ SDNP+SYK+  QTEWSYYKVVIPL +L++VNPSS+ +NPAEKY+QVIS+DNHEFW
Sbjct: 193 KIAYSSDNPISYKNDNQTEWSYYKVVIPLLELKSVNPSSNTSNPAEKYIQVISVDNHEFW 252

Query: 187 FMGFLNYNGAVEWLQGALEA-RNLES 211
           FMGFLNY GAVE LQGA++A R ++S
Sbjct: 253 FMGFLNYEGAVESLQGAIQAGRQIQS 278

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449469813|ref|XP_004152613.1| PREDICTED: GEM-like protein 1-like [Cucumis sativus] gi|449527647|ref|XP_004170821.1| PREDICTED: GEM-like protein 1-like [Cucumis sativus]

 Score =  313 bits (801), Expect = 4e-83,   Method: Compositional matrix adjust.
 Identities = 149/202 (73%), Positives = 170/202 (84%), Gaps = 1/202 (0%)

Query: 7   SNPYVAHTPAPPSNSFSFKDAVGSVKDVLGRWGKKVGEATKKAEDLAGNTWQHLKTSPSF 66
           +NPYV+  PAP  N  S K  + SVK +LGRWGK+  EATKKAEDLAGN WQHLKT PSF
Sbjct: 98  ANPYVSAAPAP-GNPSSSKHTMDSVKVMLGRWGKRAVEATKKAEDLAGNMWQHLKTGPSF 156

Query: 67  ADAAMGRIAQGTKVLAEGGYEKIFRQTFETVPEEQLQNSYACYLSTSAGPVMGILYVSTA 126
           ADAA+GRIAQGTKVLAEGGYEKIFRQTFE  PEE+LQ +YACYLSTSAGPVMG LY+STA
Sbjct: 157 ADAAVGRIAQGTKVLAEGGYEKIFRQTFENTPEEKLQKAYACYLSTSAGPVMGTLYISTA 216

Query: 127 KLAFCSDNPLSYKSSGQTEWSYYKVVIPLHQLRAVNPSSSRNNPAEKYVQVISIDNHEFW 186
           KLAFCSDNPLSYK   +T+WS YKVVIPLH L++VNPS+S+  PAEK++QVISIDNHEFW
Sbjct: 217 KLAFCSDNPLSYKVGEETQWSLYKVVIPLHHLKSVNPSTSKAKPAEKFIQVISIDNHEFW 276

Query: 187 FMGFLNYNGAVEWLQGALEARN 208
           FMGF++Y+ AV+ LQ AL   N
Sbjct: 277 FMGFVSYDSAVKTLQEALHPNN 298

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357465343|ref|XP_003602953.1| GLABRA2 expression modulator [Medicago truncatula] gi|355492001|gb|AES73204.1| GLABRA2 expression modulator [Medicago truncatula]

 Score =  309 bits (792), Expect = 5e-82,   Method: Compositional matrix adjust.
 Identities = 154/201 (76%), Positives = 177/201 (88%), Gaps = 2/201 (0%)

Query: 7   SNPYVAHTPAPPSNSFSFKDAVGSVKDVLGRWGKKVGEATKKAEDLAGNTWQHLKTSPSF 66
           SNPYV  +PAP     S K+ + SVKDVLG+WGKK  EATKKAEDLAGN WQHLKT PSF
Sbjct: 60  SNPYV--SPAPVPAPTSAKNTLDSVKDVLGKWGKKAAEATKKAEDLAGNMWQHLKTGPSF 117

Query: 67  ADAAMGRIAQGTKVLAEGGYEKIFRQTFETVPEEQLQNSYACYLSTSAGPVMGILYVSTA 126
           ADAA+GRIAQGTKVLAEGGYEKIFRQTFETVPEEQL  +YACYLSTSAGPVMG+LY+STA
Sbjct: 118 ADAAVGRIAQGTKVLAEGGYEKIFRQTFETVPEEQLLKTYACYLSTSAGPVMGVLYLSTA 177

Query: 127 KLAFCSDNPLSYKSSGQTEWSYYKVVIPLHQLRAVNPSSSRNNPAEKYVQVISIDNHEFW 186
           KLAFCSDNPLSY++  QT+WSYYKVVIPLHQLRAVNPS+S+ NP EK++Q+IS+DNHEFW
Sbjct: 178 KLAFCSDNPLSYQTGDQTQWSYYKVVIPLHQLRAVNPSTSKANPTEKFIQIISVDNHEFW 237

Query: 187 FMGFLNYNGAVEWLQGALEAR 207
           FMGF+ Y+ AV+ +Q AL++R
Sbjct: 238 FMGFVYYDSAVKHIQEALQSR 258

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	212
TAIR|locus:505006267	299	GEM "AT2G22475" [Arabidopsis t	0.971	0.688	0.768	2.1e-84
TAIR|locus:2032185	259	FIP1 "AT1G28200" [Arabidopsis	0.910	0.745	0.665	6.1e-71
TAIR|locus:2183901	272	AT5G13200 "AT5G13200" [Arabido	0.853	0.665	0.427	1.1e-41
TAIR|locus:2133387	233	AT4G01600 "AT4G01600" [Arabido	0.915	0.832	0.447	3.6e-41
TAIR|locus:2166806	219	AT5G23370 "AT5G23370" [Arabido	0.834	0.808	0.359	3.8e-30
TAIR|locus:2150823	222	AT5G08350 "AT5G08350" [Arabido	0.905	0.864	0.354	5.6e-29
TAIR|locus:2166791	210	AT5G23360 "AT5G23360" [Arabido	0.745	0.752	0.358	1.2e-28

TAIR|locus:505006267 GEM "AT2G22475" [Arabidopsis thaliana (taxid:3702)]

 Score = 845 (302.5 bits), Expect = 2.1e-84, P = 2.1e-84
 Identities = 159/207 (76%), Positives = 181/207 (87%)

Query:     6 GSNPYVAHTPAPPSNSFSFKDAVGSVKDVLGRWGKKVGEATKKAEDLAGNTWQHLKTSPS 65
             GSNPY+A +PA  S++ S KD + +VK VLGRWGK+V EA KK E LAGNTWQHL+T+PS
Sbjct:    94 GSNPYIARSPAETSDA-SLKDTMETVKGVLGRWGKRVAEAAKKTESLAGNTWQHLRTAPS 152

Query:    66 FADAAMGRIAQGTKVLAEGGYEKIFRQTFETVPEEQLQNSYACYLSTSAGPVMGILYVST 125
             FADAAMGRIAQ TKV AEGGYEKIFRQTFET PEEQL NS+ACYLSTSAGPVMG+LY+S+
Sbjct:   153 FADAAMGRIAQSTKVFAEGGYEKIFRQTFETDPEEQLLNSFACYLSTSAGPVMGVLYISS 212

Query:   126 AKLAFCSDNPLSYKSSGQTEWSYYKVVIPLHQLRAVNPSSSRNNPAEKYVQVISIDNHEF 185
             AKLA+CSDNPLSYK+  QTEWSYYKVVIPLHQL+AVNPS+S  NPAEKY+QVIS+DNHEF
Sbjct:   213 AKLAYCSDNPLSYKNGDQTEWSYYKVVIPLHQLKAVNPSASIVNPAEKYIQVISVDNHEF 272

Query:   186 WFMGFLNYNGAVEWLQGALEARNLESV 212
             WFMGFLNY+GAV  LQ +L+A  L SV
Sbjct:   273 WFMGFLNYDGAVTSLQDSLQAGALRSV 299

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0010026 "trichome differentiation" evidence=IMP

GO:0010482 "regulation of epidermal cell division" evidence=IMP

GO:0048765 "root hair cell differentiation" evidence=IMP

GO:0051567 "histone H3-K9 methylation" evidence=IDA

GO:0005829 "cytosol" evidence=IDA

GO:0042732 "D-xylose metabolic process" evidence=RCA

TAIR|locus:2032185 FIP1 "AT1G28200" [Arabidopsis thaliana (taxid:3702)]

 Score = 718 (257.8 bits), Expect = 6.1e-71, P = 6.1e-71
 Identities = 133/200 (66%), Positives = 165/200 (82%)

Query:     7 SNPYVAHTPAPPSNSFSFKDAVGSVKDVLGRWGKKVGEATKKAEDLAGNTWQHLKTSPSF 66
             SNPYV+ +PAP       ++ + SVKD LG+WGK   +ATKKAEDLAGN WQHLKT PS 
Sbjct:    64 SNPYVSPSPAP-------RNTMDSVKDTLGKWGKMAADATKKAEDLAGNFWQHLKTGPSV 116

Query:    67 ADAAMGRIAQGTKVLAEGGYEKIFRQTFETVPEEQLQNSYACYLSTSAGPVMGILYVSTA 126
             ADAA+ RIAQGTK+LAEGGYEK+F+QTF+ +P+E+L  +YACYLSTSAGPV+G++Y+ST 
Sbjct:   117 ADAAVSRIAQGTKILAEGGYEKVFKQTFDCLPDEKLLKTYACYLSTSAGPVLGVMYLSTH 176

Query:   127 KLAFCSDNPLSYKSSGQTEWSYYKVVIPLHQLRAVNPSSSRNNPAEKYVQVISIDNHEFW 186
             KLAF SDNPLSYK   QT WSYYKVV+P +QL+AVNPS+SR N ++KY+QVISIDNHEFW
Sbjct:   177 KLAFSSDNPLSYKEGEQTLWSYYKVVLPANQLKAVNPSTSRVNTSDKYIQVISIDNHEFW 236

Query:   187 FMGFLNYNGAVEWLQGALEA 206
             FMGF+ Y  AV+ LQ A+++
Sbjct:   237 FMGFVTYESAVKSLQEAVQS 256

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

GO:0009507 "chloroplast" evidence=ISM

GO:0006623 "protein targeting to vacuole" evidence=RCA

GO:0006944 "cellular membrane fusion" evidence=RCA

GO:0016192 "vesicle-mediated transport" evidence=RCA

GO:0016197 "endosomal transport" evidence=RCA

TAIR|locus:2183901 AT5G13200 "AT5G13200" [Arabidopsis thaliana (taxid:3702)]

 Score = 442 (160.7 bits), Expect = 1.1e-41, P = 1.1e-41
 Identities = 83/194 (42%), Positives = 122/194 (62%)

Query:     9 PYVAHTPAP-PSNSFSFKDAVGSVKDVLGRWGKKVGEATKKAEDLAGNTWQHLKTSPSFA 67
             PYV ++P   P+ +   +  +G    +   W       ++KAE +A N W +LKT PS +
Sbjct:    74 PYVIYSPVEHPTTNNPLEPVIG----MFHTW-------SRKAETVARNLWHNLKTGPSMS 122

Query:    68 DAAMGRIAQGTKVLAEGGYEKIFRQTFETVPEEQLQNSYACYLSTSAGPVMGILYVSTAK 127
             + A G++    K + +GG+E +FRQ F T P E L+ ++ACYLST+ GPV G +Y+S A+
Sbjct:   123 ETAWGKVNLTAKAITKGGFESLFRQIFGTEPNETLKKTFACYLSTTTGPVAGTVYLSNAR 182

Query:   128 LAFCSDNPLSYKS-SGQTEWSYYKVVIPLHQLRAVNPSSSRNNPAEKYVQVISIDNHEFW 186
             +AFCSD PL + + SGQ  WSYY+VV+PL  +  VNP   +  P EKY+Q+ ++D H+FW
Sbjct:   183 VAFCSDRPLYFTAPSGQESWSYYRVVVPLANVATVNPVVVKETPPEKYIQLTTVDGHDFW 242

Query:   187 FMGFLNYNGAVEWL 200
             FMGF+NY  A   L
Sbjct:   243 FMGFVNYEKATHHL 256

GO:0003674 "molecular_function" evidence=ND

GO:0005737 "cytoplasm" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0010286 "heat acclimation" evidence=RCA

TAIR|locus:2133387 AT4G01600 "AT4G01600" [Arabidopsis thaliana (taxid:3702)]

 Score = 437 (158.9 bits), Expect = 3.6e-41, P = 3.6e-41
 Identities = 89/199 (44%), Positives = 132/199 (66%)

Query:     8 NPYVAHTPAPPSNSFSFKDAVGSVKDVLGRWGKKVGEATKKAEDLAGNTWQHLKTSPSFA 67
             NPYV H  +P   S S K +   V +VL R GKKV +AT+KAE L G    HLK SPS +
Sbjct:    29 NPYV-HITSP--TSASDKRSKDKVLEVLNRCGKKVEDATRKAEALVGGLKDHLKFSPSIS 85

Query:    68 DAAMGRIAQGTKVLAEGGYEKIFRQTFETVPEEQLQNSYACYLSTSAGPVMGILYVSTAK 127
             DAAM R++QGTK++ EGG E++F++ F  +  E+L +S+ CY+ST++GPV G++Y+S  +
Sbjct:    86 DAAMARLSQGTKMIVEGGPERVFQREFGVLAVEKLLDSFVCYISTTSGPVTGVIYISNRR 145

Query:   128 LAFCSDNPLSYKSS--GQTEWSYYKVVIPLHQLRAVNPSSSRNNPAEKYVQVISIDNHEF 185
             +AFCSD  +   SS  G    +YYKVV+   ++ +++ S++   P+E+YV +++ D  EF
Sbjct:   146 IAFCSDYAIRLPSSAGGNGVAAYYKVVMEWEKISSISSSTNVLKPSERYVHMVTRDGFEF 205

Query:   186 WFMGFLNYNGAVEWLQGAL 204
             WFMGF++Y  A   L  AL
Sbjct:   206 WFMGFVSYIDAFNCLNKAL 224

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

TAIR|locus:2166806 AT5G23370 "AT5G23370" [Arabidopsis thaliana (taxid:3702)]

 Score = 333 (122.3 bits), Expect = 3.8e-30, P = 3.8e-30
 Identities = 68/189 (35%), Positives = 108/189 (57%)

Query:    17 PPSNSFSFKDAVGSVKDVLGRWGKKVGEATKKAEDLAGNTWQHLKTSPSFADAAMGRIAQ 76
             P S+ FSF    G  K +L +         KK +          K  P   +    +++ 
Sbjct:    36 PTSSKFSF--LTGKGKSMLRK---------KKNDSFTNGVRDQDKLGPKLTETVKRKLSL 84

Query:    77 GTKVLAEGGYEKIFRQTFETVPEEQLQNSYACYLSTSAGPVMGILYVSTAKLAFCSDNPL 136
             G ++L  GG EKI+++ F+   EE+L  +Y CYLST+AGP+ G+L++S+ K+AFCS+  +
Sbjct:    85 GARILQMGGLEKIYKRLFKVSDEEKLFKAYQCYLSTTAGPIAGLLFISSKKIAFCSERSI 144

Query:   137 SYKS-SGQTEWSYYKVVIPLHQLRAVNPSSSRNNPAEKYVQVISIDNHEFWFMGFLNYNG 195
                S  G+    +YKV IPL ++  VN S +   P++KY++V+++D  +FWFMGFL+Y  
Sbjct:   145 KVASPQGELNRVHYKVSIPLCKINGVNQSQNTTKPSQKYLEVVTVDGFDFWFMGFLSYQK 204

Query:   196 AVEWLQGAL 204
             A   L+ AL
Sbjct:   205 AFNCLEQAL 213

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

GO:0009507 "chloroplast" evidence=ISM

TAIR|locus:2150823 AT5G08350 "AT5G08350" [Arabidopsis thaliana (taxid:3702)]

 Score = 322 (118.4 bits), Expect = 5.6e-29, P = 5.6e-29
 Identities = 74/209 (35%), Positives = 111/209 (53%)

Query:     3 PIDGSNPYVAHTPAPPS-NSF-----SFKDAVGSVKDVLGRWGKKVGEATKKAEDLAGNT 56
             P   + P V + P P S N F     S K    +VK +L R         KK +      
Sbjct:    14 PAAKATP-VGYLPDPASFNKFRVPASSKKSEQSNVKSILKR---------KKTDGFTNGV 63

Query:    57 WQHLKTSPSFADAAMGRIAQGTKVLAEGGYEKIFRQTFETVPEEQLQNSYACYLSTSAGP 116
                 K  P   +    +++ G ++L  GG EKIF++ F     E+L   Y CYLST+AGP
Sbjct:    64 RDQSKIRPKLTETVKRKLSLGARILQVGGLEKIFKRLFRVSEGEKLFKMYQCYLSTTAGP 123

Query:   117 VMGILYVSTAKLAFCSDNPLSYKS-SGQTEWSYYKVVIPLHQLRAVNPSSSRNNPAEKYV 175
             + G+L++S+ K+AFCS+  +   S  G     +YKV IPL ++  VN S +   P++KY+
Sbjct:   124 IAGLLFISSKKMAFCSERSIKVDSPQGDIIRVHYKVSIPLCKIDRVNQSQNTKKPSQKYL 183

Query:   176 QVISIDNHEFWFMGFLNYNGAVEWLQGAL 204
             +V+++D  +FWFMGFL+Y  A   L+ AL
Sbjct:   184 EVVTVDGFDFWFMGFLSYQKAFNCLEKAL 212

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2166791 AT5G23360 "AT5G23360" [Arabidopsis thaliana (taxid:3702)]

 Score = 319 (117.4 bits), Expect = 1.2e-28, P = 1.2e-28
 Identities = 57/159 (35%), Positives = 96/159 (60%)

Query:    47 KKAEDLAGNTWQHLKTSPSFADAAMGRIAQGTKVLAEGGYEKIFRQTFETVPEEQLQNSY 106
             KK +          K  P   +    +++ G K+L  GG EKI+++ F+   +E+L  +Y
Sbjct:    47 KKTDSFTNGARDQDKLGPKLTETVKRKLSLGAKILQMGGLEKIYKRLFKVCDKEKLFKAY 106

Query:   107 ACYLSTSAGPVMGILYVSTAKLAFCSDNPLSYKS-SGQTEWSYYKVVIPLHQLRAVNPSS 165
              CYLST+ G + G+L++S+ K+AFCS+  +   S  G     +YKV IPL ++  VN S 
Sbjct:   107 QCYLSTTEGSIAGLLFISSKKIAFCSERSIKVTSPQGDLTRVHYKVSIPLCKINGVNQSQ 166

Query:   166 SRNNPAEKYVQVISIDNHEFWFMGFLNYNGAVEWLQGAL 204
             +   P+++Y++V+++DN++FWFMGF++Y  A   L+ AL
Sbjct:   167 NTKKPSQRYLEVVTVDNYDFWFMGFVSYQKAFNCLEKAL 205


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.314   0.130   0.393    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      212       212   0.00083  112 3  11 23  0.42    33
                                                     31  0.49    35


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  7
  No. of states in DFA:  612 (65 KB)
  Total size of DFA:  191 KB (2109 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  19.03u 0.06s 19.09t   Elapsed:  00:00:01
  Total cpu time:  19.03u 0.06s 19.09t   Elapsed:  00:00:01
  Start:  Fri May 10 08:17:06 2013   End:  Fri May 10 08:17:07 2013

GO:0008150 "biological_process" evidence=ND

GO:0009507 "chloroplast" evidence=ISM

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q8S8F8	GEM_ARATH	No assigned EC number	0.7658	0.9622	0.6822	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	212
cd13222	127	cd13222, PH-GRAM_GEM, GLABRA 2 expression modulato	6e-86
smart00568	60	smart00568, GRAM, domain in glucosyltransferases,	2e-13
cd10570	94	cd10570, PH-GRAM, Pleckstrin Homology-Glucosyltran	2e-12
pfam02893	60	pfam02893, GRAM, GRAM domain	8e-10
cd13216	117	cd13216, PH-GRAM2_AGT26, Autophagy-related protein	4e-05
cd13219	161	cd13219, PH-GRAM_C2-GRAM, C2 and GRAM domain-conta	3e-04

>gnl|CDD|241376 cd13222, PH-GRAM_GEM, GLABRA 2 expression modulator (GEM) Pleckstrin Homology-Glucosyltransferases, Rab-like GTPase activators and Myotubularins (PH-GRAM) domain

 Score =  249 bits (638), Expect = 6e-86
 Identities = 76/125 (60%), Positives = 97/125 (77%), Gaps = 1/125 (0%)

Query: 81  LAEGGYEKIFRQTFETVPEEQLQNSYACYLSTSAGPVMGILYVSTAKLAFCSDNPLSYKS 140
           L EGG EK+FRQTF   P E+L  +  CYLST+AGPV G L++STAK+AFCSD PLS+ S
Sbjct: 1   LQEGGVEKVFRQTFGVGPGEKLLKASQCYLSTTAGPVAGTLFISTAKVAFCSDRPLSFTS 60

Query: 141 -SGQTEWSYYKVVIPLHQLRAVNPSSSRNNPAEKYVQVISIDNHEFWFMGFLNYNGAVEW 199
            SGQ   SYYKVVIPL +++AVNPS +  NP+EKY+Q++++D  EFWFMGF+NY  A ++
Sbjct: 61  PSGQLVRSYYKVVIPLRKIKAVNPSENVKNPSEKYIQIVTVDGFEFWFMGFVNYQKAFKY 120

Query: 200 LQGAL 204
           LQ AL
Sbjct: 121 LQQAL 125

GEM interacts with CDT1, a pre-replication complex component that is involved in DNA replication, and with TTG1 (Transparent Testa GLABRA 1), a transcriptional regulator of epidermal cell fate. GEM controls the level of histone H3K9 methylation at the promoters of the GLABRA 2 and CAPRICE (CPC) genes, which are essential for epidermis patterning. GEM also regulates cell division in different root cell types. GEM regulates proliferation-differentiation decisions by integrating DNA replication, cell division and transcriptional controls. The GRAM domain is found in glucosyltransferases, myotubularins and other putative membrane-associated proteins. The GRAM domain is part of a larger motif with a pleckstrin homology (PH) domain fold. Length = 127

>gnl|CDD|214725 smart00568, GRAM, domain in glucosyltransferases, myotubularins and other putative membrane-associated proteins

 Score = 61.8 bits (151), Expect = 2e-13
 Identities = 26/68 (38%), Positives = 34/68 (50%), Gaps = 11/68 (16%)

Query: 98  PEEQLQNSYACYLSTSAGPVMGILYVSTAKLAFCSDNPLSYKSSGQTEWSYYKVVIPLHQ 157
            EE+L   Y+CYLS   GPV G LY+S  +L F S+ P              KVVIPL  
Sbjct: 4   EEEKLIADYSCYLSR-TGPVQGRLYISNYRLCFRSNLPGKLT----------KVVIPLAD 52

Query: 158 LRAVNPSS 165
           +  +  S+
Sbjct: 53  ITRIEKST 60

Length = 60

>gnl|CDD|241306 cd10570, PH-GRAM, Pleckstrin Homology-Glucosyltransferases, Rab-like GTPase activators and Myotubularins (PH-GRAM) domain

 Score = 60.4 bits (147), Expect = 2e-12
 Identities = 23/109 (21%), Positives = 38/109 (34%), Gaps = 18/109 (16%)

Query: 99  EEQLQNSYACYLSTSAGPVMGILYVSTAKLAFCSDNPLSYKSSGQTEWSYYKVVIPLHQL 158
            E+   +Y C      GPV G LY++  +L F S              S  ++ +PL  +
Sbjct: 1   LEKKDVTYICPFHV--GPVEGTLYLTNYRLYFKSKER----------DSPTELDVPLGVI 48

Query: 159 RAV---NPSSSRNNPAEKYVQVISIDNHEFWFMGFLNYNGAVEWLQGAL 204
             V     SSS  N     +++   D        F   + +   +   L
Sbjct: 49  SRVEKVGGSSSGENS--YGLEITCKD-MRNLRFAFKQEDHSRRDIFELL 94

Myotubularin-related proteins are a subfamily of protein tyrosine phosphatases (PTPs) that dephosphorylate D3-phosphorylated inositol lipids. Mutations in this family cause the human neuromuscular disorders myotubular myopathy and type 4B Charcot-Marie-Tooth syndrome. 6 of the 13 MTMRs (MTMRs 5, 9-13) contain naturally occurring substitutions of residues required for catalysis by PTP family enzymes. Although these proteins are predicted to be enzymatically inactive, they are thought to function as antagonists of endogenous phosphatase activity or interaction modules. Most MTMRs contain a N-terminal PH-GRAM domain, a Rac-induced recruitment domain (RID) domain, a PTP domain (which may be active or inactive), a SET-interaction domain, and a C-terminal coiled-coil region. In addition some members contain DENN domain N-terminal to the PH-GRAM domain and FYVE, PDZ, and PH domains C-terminal to the coiled-coil region. The GRAM domain, found in myotubularins, glucosyltransferases, and other putative membrane-associated proteins, is part of a larger motif with a pleckstrin homology (PH) domain fold. Length = 94

>gnl|CDD|217271 pfam02893, GRAM, GRAM domain

 Score = 52.6 bits (127), Expect = 8e-10
 Identities = 22/68 (32%), Positives = 29/68 (42%), Gaps = 10/68 (14%)

Query: 98  PEEQLQNSYACYLSTSAGPVMGILYVSTAKLAFCSDNPLSYKSSGQTEWSYYKVVIPLHQ 157
           PEE+L   Y+CYL     PV G LY++  +L F SD                 +VIPL  
Sbjct: 3   PEEKLIADYSCYLQRPISPVQGRLYLTNNRLCFRSDKFGDLT----------VLVIPLAD 52

Query: 158 LRAVNPSS 165
           +  V    
Sbjct: 53  IERVEKEK 60

The GRAM domain is found in in glucosyltransferases, myotubularins and other putative membrane-associated proteins. Length = 60

>gnl|CDD|241370 cd13216, PH-GRAM2_AGT26, Autophagy-related protein 26/Sterol 3-beta-glucosyltransferase Pleckstrin homology (PH) domain, repeat 2

 Score = 41.0 bits (97), Expect = 4e-05
 Identities = 30/107 (28%), Positives = 38/107 (35%), Gaps = 25/107 (23%)

Query: 90  FRQTFETVPEEQLQNSYACYLSTSAGPVMGILYVSTAKLAFCSDNPLSYKSSGQTEWSYY 149
           FR+ F     E+L   Y  YL     PV G LY+S     F S  P           +  
Sbjct: 3   FRKHFALPESEKLLAYYYAYLQRVL-PVYGKLYISDNYFCFRSLLP----------GTRT 51

Query: 150 KVVIPLHQLRAVNPSSSRNNPAEK------YVQVISIDNHEFWFMGF 190
           K+++PL  +  V          EK         VI I  HE  F  F
Sbjct: 52  KMILPLKDIENVEK--------EKGFRFGYSGLVIVIRGHEELFFEF 90

ATG26 (also called UGT51/UDP-glycosyltransferase 51), a member of the glycosyltransferase 28 family, resulting in the biosynthesis of sterol glucoside. ATG26 in decane metabolism and autophagy. There are 32 known autophagy-related (ATG) proteins, 17 are components of the core autophagic machinery essential for all autophagy-related pathways and 15 are the additional components required only for certain pathways or species. The core autophagic machinery includes 1) the ATG9 cycling system (ATG1, ATG2, ATG9, ATG13, ATG18, and ATG27), 2) the phosphatidylinositol 3-kinase complex (ATG6/VPS30, ATG14, VPS15, and ATG34), and 3) the ubiquitin-like protein system (ATG3, ATG4, ATG5, ATG7, ATG8, ATG10, ATG12, and ATG16). Less is known about how the core machinery is adapted or modulated with additional components to accommodate the nonselective sequestration of bulk cytosol (autophagosome formation) or selective sequestration of specific cargos (Cvt vesicle, pexophagosome, or bacteria-containing autophagosome formation). The pexophagosome-specific additions include the ATG30-ATG11-ATG17 receptor-adaptors complex, the coiled-coil protein ATG25, and the sterol glucosyltransferase ATG26. ATG26 is necessary for the degradation of medium peroxisomes. It contains 2 GRAM domains and a single PH domain. PH domains are only found in eukaryotes. They share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes. Length = 117

>gnl|CDD|241373 cd13219, PH-GRAM_C2-GRAM, C2 and GRAM domain-containing protein Pleckstrin Homology-Glucosyltransferases, Rab-like GTPase activators and Myotubularins (PH-GRAM) domain

 Score = 39.2 bits (92), Expect = 3e-04
 Identities = 31/140 (22%), Positives = 54/140 (38%), Gaps = 34/140 (24%)

Query: 90  FRQTFETVPEEQLQNSYACYLSTSAGPVMGILYVSTAKLAFCSDNPLSYKSSGQTEWSYY 149
           F++ F   PEE L N + C L     P+ G L++S   + F S N   +K+         
Sbjct: 22  FQKLFGLPPEEFLINDFTCALKRKF-PLQGRLFLSARIIGFYS-NLFGHKT--------- 70

Query: 150 KVVIPLH---QLRAVNPSSSRNNPAEKYVQVI--------------SIDNH---EFWFMG 189
           K         +++   PS S  +P+   + +I                D     +F F  
Sbjct: 71  KFFFLWEDIEEIQVSPPSLSVGSPS---IVIILRKGRGLDARHGAKPQDPEGRLKFHFQS 127

Query: 190 FLNYNGAVEWLQGALEARNL 209
           F+++N A   +    + R+L
Sbjct: 128 FVSFNHAFRTIMALWKNRSL 147

C2GRAM contains two N-terminal C2 domains followed by a single PH-GRAM domain. Since it contains both of these domains it is assumed that this gene cross-links both calcium and phosphoinositide signaling pathways. In general he C2 domain is involved in binding phospholipids in a calcium dependent manner or calcium independent manner. The GRAM domain is found in glucosyltransferases, myotubularins and other putative membrane-associated proteins. The GRAM domain is part of a larger motif with a pleckstrin homology (PH) domain fold. Length = 161

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	212
PF02893	69	GRAM: GRAM domain; InterPro: IPR004182 The GRAM do	99.35
smart00568	61	GRAM domain in glucosyltransferases, myotubularins	99.17
PF14470	96	bPH_3: Bacterial PH domain	95.95
KOG4347	671	consensus GTPase-activating protein VRP [General f	82.35
PF14844	106	PH_BEACH: PH domain associated with Beige/BEACH; P	80.45

>PF02893 GRAM: GRAM domain; InterPro: IPR004182 The GRAM domain is found in glucosyltransferases, myotubularins and other putative membrane-associated proteins

Probab=99.35  E-value=4.7e-13  Score=93.92  Aligned_cols=65  Identities=37%  Similarity=0.580  Sum_probs=45.3

Q ss_pred             eeeecccCChhhhhhhhcceeeecCCCCceeeEEEeeceeeeecCCCceeecCCCeeeeEEEEEEecccccccc
Q 028224           89 IFRQTFETVPEEQLQNSYACYLSTSAGPVMGILYVSTAKLAFCSDNPLSYKSSGQTEWSYYKVVIPLHQLRAVN  162 (212)
Q Consensus        89 iFkQ~F~~~~~EkLlKa~~CYLSTtaGPVaG~LfiSt~kvAFcSdrpl~~~~~g~~~~~yYKVvIPL~kik~vn  162 (212)
                      -|++.|...++|+|...+.|+|.++.+|+.|.||||+.+++|+|+.+-.-.         ++++|||..|..|.
T Consensus         2 ~f~~~F~lp~~E~li~~~~c~l~~~~~~~~G~LyiT~~~lcF~s~~~~~~~---------~~~~ipl~~I~~i~   66 (69)
T PF02893_consen    2 KFRKLFKLPEEERLIEEYSCALFKSKIPVQGRLYITNNYLCFYSNKFGSKT---------CKFVIPLSDIKSIE   66 (69)
T ss_dssp             ---------TT--EEEEEEETTTEE---EEEEEEEESSEEEEEESSSSS-E----------EEEEEGGGEEEEE
T ss_pred             cccccccCCCCCeEEEEEEEEEECCccceeeEEEECCCEEEEEECCCCCce---------EEEEEEhHheeEEE
Confidence            589999999999999999999999999999999999999999998665422         78999999999886

It is normally about 70 amino acids in length. It is thought to be an intracellular protein-binding or lipid-binding signalling domain, which has an important function in membrane-associated processes. Mutations in the GRAM domain of myotubularins cause a muscle disease, which suggests that the domain is essential for the full function of the enzyme []. Myotubularin-related proteins are a large subfamily of protein tyrosine phosphatases (PTPs) that dephosphorylate D3-phosphorylated inositol lipids [].; PDB: 1M7R_B 1LW3_A 1ZVR_A 1ZSQ_A.

>smart00568 GRAM domain in glucosyltransferases, myotubularins and other putative membrane-associated proteins

Probab=99.17  E-value=2.3e-11  Score=83.54  Aligned_cols=58  Identities=45%  Similarity=0.717  Sum_probs=50.4

Q ss_pred             CChhhhhhhhcceeeecCCCCceeeEEEeeceeeeecCCCceeecCCCeeeeEEEEEEeccccccccC
Q 028224           96 TVPEEQLQNSYACYLSTSAGPVMGILYVSTAKLAFCSDNPLSYKSSGQTEWSYYKVVIPLHQLRAVNP  163 (212)
Q Consensus        96 ~~~~EkLlKa~~CYLSTtaGPVaG~LfiSt~kvAFcSdrpl~~~~~g~~~~~yYKVvIPL~kik~vnp  163 (212)
                      ..++|+|...|.|+|+ +.+|+.|.||||+.+++|+|+.+-...         -+++|||+.|.+|+.
T Consensus         2 l~~~E~l~~~~~C~l~-~~~~~~G~lyiT~~~l~F~S~~~~~~~---------~~~~ipl~~I~~i~k   59 (61)
T smart00568        2 LPEEEKLIADYSCYLS-RDGPVQGRLYISNYRLCFRSDLPGKLT---------PKVVIPLADITRIEK   59 (61)
T ss_pred             cCCCcEEEEEEEeEEC-CCccccEEEEEECCEEEEEccCCCCee---------EEEEEEHHHeeEEEE
Confidence            4689999999999999 679999999999999999997655422         189999999999874

>PF14470 bPH_3: Bacterial PH domain

Probab=95.95  E-value=0.052  Score=39.08  Aligned_cols=94  Identities=12%  Similarity=0.141  Sum_probs=65.8

Q ss_pred             ChhhhhhhhcceeeecCCCCceeeEEEeeceeeeecCCCceeecCCCeeeeEEEEEEeccccccccCCCCCCCCCCCeEE
Q 028224           97 VPEEQLQNSYACYLSTSAGPVMGILYVSTAKLAFCSDNPLSYKSSGQTEWSYYKVVIPLHQLRAVNPSSSRNNPAEKYVQ  176 (212)
Q Consensus        97 ~~~EkLlKa~~CYLSTtaGPVaG~LfiSt~kvAFcSdrpl~~~~~g~~~~~yYKVvIPL~kik~vnps~n~~nP~eKYIq  176 (212)
                      .+||+.+-...|.+-...+.-.|+|+++++||-||+-.++.     +    .....||+++|.+|+-....   -...|.
T Consensus         2 ~~~E~I~~~~~~~~~~~~~~~~g~l~~TnkRlif~~~~~~~-----~----~~~~~i~y~~I~~v~~~~g~---~~~~i~   69 (96)
T PF14470_consen    2 KEDEEIEYVAVGSYNYFFTSFPGVLVLTNKRLIFYSKGMFG-----G----KKFESIPYDDITSVSFKKGI---LGGKIT   69 (96)
T ss_pred             cCCCEEEEEEEEEEeecccCceeEEEEeCCEEEEEEcccCC-----C----ceEEEEEhhheEEEEEEccc---cccEEE
Confidence            57899998999988766778899999999999999874332     1    12489999999999976433   446788


Q ss_pred             EEEecCceeeeeeccchHHHHHHHHHHHh
Q 028224          177 VISIDNHEFWFMGFLNYNGAVEWLQGALE  205 (212)
Q Consensus       177 IvTvD~~eFWFMGFvnY~kA~k~Lq~a~~  205 (212)
                      |.| ++..+ =++.+ -.+-++-+-+.|+
T Consensus        70 i~~-~~~~~-~i~~i-~k~~~~~~~~~i~   95 (96)
T PF14470_consen   70 IET-NGEKI-KIDNI-QKGDVKEFYEYIK   95 (96)
T ss_pred             EEE-CCEEE-EEEEc-CHHHHHHHHHHHh
Confidence            888 44444 33544 3333344444443

>KOG4347 consensus GTPase-activating protein VRP [General function prediction only]

Probab=82.35  E-value=1.6  Score=44.41  Aligned_cols=97  Identities=22%  Similarity=0.267  Sum_probs=75.0

Q ss_pred             ecccCChhhhhhhhcceeeecCCC--CceeeEEEeeceeeeecCCCceeecCCCeeeeEEEEEEeccccccccCCCCCCC
Q 028224           92 QTFETVPEEQLQNSYACYLSTSAG--PVMGILYVSTAKLAFCSDNPLSYKSSGQTEWSYYKVVIPLHQLRAVNPSSSRNN  169 (212)
Q Consensus        92 Q~F~~~~~EkLlKa~~CYLSTtaG--PVaG~LfiSt~kvAFcSdrpl~~~~~g~~~~~yYKVvIPL~kik~vnps~n~~n  169 (212)
                      -.|...  |+|.-.-.|=|-|..-  -..|-||+||..++|.||-+=.           -.+++||.-|+.|.-.. ..+
T Consensus        14 ~~Frlp--e~l~~~~~~~l~~p~s~~~~~G~l~~s~~f~cF~s~~~~~-----------c~~~~Pl~~vr~ve~~~-~ss   79 (671)
T KOG4347|consen   14 AFFRLP--EKLDGSTMCNLWTPYSRYHEQGRLFLSTNFICFASDTEWL-----------CSFITPLLAVRSVERLD-DSS   79 (671)
T ss_pred             ceeecc--hhcCceeecccCCCcchhhccceeeeccceEEeecCCccc-----------ceEeeehhhhhhhhccC-ccc
Confidence            455555  9999999999999866  5899999999999999997643           24899999999988544 222


Q ss_pred             CCCCeEEEEEecCceeeeeeccchHHHHHHHHH
Q 028224          170 PAEKYVQVISIDNHEFWFMGFLNYNGAVEWLQG  202 (212)
Q Consensus       170 P~eKYIqIvTvD~~eFWFMGFvnY~kA~k~Lq~  202 (212)
                      --+.=|-+.|-.+-.|-|-|...=++.+.-++.
T Consensus        80 ~~~~~i~~~~~~~~~~~f~~~~~r~~~~~k~~~  112 (671)
T KOG4347|consen   80 LFTQLISLFTSNMVGMRFGGLTERLKLLSKLHL  112 (671)
T ss_pred             cchhhhHHhhcCcceEEecchhhHHHHHHHHhc
Confidence            223336678889999999999887777765553

>PF14844 PH_BEACH: PH domain associated with Beige/BEACH; PDB: 1MI1_B 1T77_C

Probab=80.45  E-value=1.9  Score=32.43  Aligned_cols=84  Identities=18%  Similarity=0.260  Sum_probs=53.9

Q ss_pred             hhhhcceeeecCCCCceeeEEEeeceeeeecCCCceee--cC---CCeeeeEEEEEEeccccccccCCCCCCCCCCCeEE
Q 028224          102 LQNSYACYLSTSAGPVMGILYVSTAKLAFCSDNPLSYK--SS---GQTEWSYYKVVIPLHQLRAVNPSSSRNNPAEKYVQ  176 (212)
Q Consensus       102 LlKa~~CYLSTtaGPVaG~LfiSt~kvAFcSdrpl~~~--~~---g~~~~~yYKVvIPL~kik~vnps~n~~nP~eKYIq  176 (212)
                      ++-++.|-+=|..+-+.|+|.|++..+.|..|..-...  ..   .......--..+|+.+|+.|-..--..+  +-=||
T Consensus         2 i~~s~~c~~I~~~~~~~G~l~i~~~~i~F~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~I~~v~~RRyllr--~~AlE   79 (106)
T PF14844_consen    2 ILLSVPCELITPLDSIPGTLIITKSSIYFIPNDNSSENKISSENPSISISKPKSKRWPLSDIKEVHKRRYLLR--DTALE   79 (106)
T ss_dssp             -SEEEEEEEEETTEEEEEEEEE-SSEEEEEE--TTSHHHHCS-HHHHCC---TCEEEEGGGEEEEEEEEETTE--EEEEE
T ss_pred             EEEEEEEEEEEeeeeEEEEEEEeCCEEEEEECCcccccccccccccccccCCceEEEEHHHhHHHHHHHhcCc--ceEEE
Confidence            44578899999999999999999999999998222111  00   0111122235689999999985543333  33489


Q ss_pred             EEEecCceeee
Q 028224          177 VISIDNHEFWF  187 (212)
Q Consensus       177 IvTvD~~eFWF  187 (212)
                      |.+.||..+-|
T Consensus        80 iF~~dg~s~f~   90 (106)
T PF14844_consen   80 IFFSDGRSYFF   90 (106)
T ss_dssp             EEETTS-EEEE
T ss_pred             EEEcCCcEEEE
Confidence            99999988743

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	212
1zsq_A	528	Myotubularin-related protein 2; protein-phospholip	91.45
1lw3_A	657	Myotubularin-related protein 2; protein-phosphate	89.26
2hth_B	140	Vacuolar protein sorting protein 36; GLUE domain,	83.46

>1zsq_A Myotubularin-related protein 2; protein-phospholipid complex, hydrolase; HET: PIB; 1.82A {Homo sapiens} SCOP: b.55.1.8 c.45.1.3 PDB: 1zvr_A*

Probab=91.45  E-value=0.54  Score=44.78  Aligned_cols=102  Identities=15%  Similarity=0.116  Sum_probs=60.4

Q ss_pred             ccCChhhhhhhhcce--eeecCCCCceeeEEEeeceeeeecCCCceeecCCCeeeeEEEEEEeccccccccCCCCCCCCC
Q 028224           94 FETVPEEQLQNSYAC--YLSTSAGPVMGILYVSTAKLAFCSDNPLSYKSSGQTEWSYYKVVIPLHQLRAVNPSSSRNNPA  171 (212)
Q Consensus        94 F~~~~~EkLlKa~~C--YLSTtaGPVaG~LfiSt~kvAFcSdrpl~~~~~g~~~~~yYKVvIPL~kik~vnps~n~~nP~  171 (212)
                      |...|||.++..-.-  |+..-.|++.|+|||++.|+.|.++..      +.    .+.+-|||..|..|..........
T Consensus         7 ~~lLpGE~i~~~~~~V~~~~~~~~~~~GtL~lTn~rLiF~~~~~------~~----~~~~~iPL~~I~~vek~~~~s~~~   76 (528)
T 1zsq_A            7 PPLLPGENIKDMAKDVTYICPFTGAVRGTLTVTNYRLYFKSMER------DP----PFVLDASLGVINRVEKIGGASSRG   76 (528)
T ss_dssp             CCCCTTCCEEEEEEEEEEEETTTEEEEEEEEEESSEEEEEESSS------SS----CEEEEEEGGGEEEEEEECCTTCCS
T ss_pred             CccCCCCeEEEecCCEEEeCCCCCceeEEEEEECCEEEEEccCC------Cc----cEEEEeeccceEEEEEcCCCCcCC
Confidence            556899999855211  555557899999999999999998521      11    234689988777776422110111


Q ss_pred             --CCeEEEEEecCceeeeeeccchHHHHHHHHHHHhh
Q 028224          172 --EKYVQVISIDNHEFWFMGFLNYNGAVEWLQGALEA  206 (212)
Q Consensus       172 --eKYIqIvTvD~~eFWFMGFvnY~kA~k~Lq~a~~~  206 (212)
                        --.|+|..-|- ..+=.+|-.=+...+.+-++|++
T Consensus        77 ~~~~~l~I~CKDf-r~~~f~f~~~~~~~~~v~~~L~~  112 (528)
T 1zsq_A           77 ENSYGLETVCKDI-RNLRFAHKPEGRTRRSIFENLMK  112 (528)
T ss_dssp             TTCSEEEEEETTT-EEEEEECCGGGCCHHHHHHHHHH
T ss_pred             CCCceEEEEccCC-eEEEEEecCchHHHHHHHHHHHH
Confidence              12477766654 44444565433323344445443

>1lw3_A Myotubularin-related protein 2; protein-phosphate complex, hydrolase; 2.30A {Homo sapiens} SCOP: b.55.1.8 c.45.1.3 PDB: 1m7r_A

Probab=89.26  E-value=1  Score=44.17  Aligned_cols=121  Identities=16%  Similarity=0.132  Sum_probs=60.4

Q ss_pred             hhhhhhhhhhcCCcceeeeecccCChhhhhhhhcc-e-eeecCCCCceeeEEEeeceeeeecCCCceeecCCCeeeeEEE
Q 028224           73 RIAQGTKVLAEGGYEKIFRQTFETVPEEQLQNSYA-C-YLSTSAGPVMGILYVSTAKLAFCSDNPLSYKSSGQTEWSYYK  150 (212)
Q Consensus        73 KlslGakil~~GG~ekiFkQ~F~~~~~EkLlKa~~-C-YLSTtaGPVaG~LfiSt~kvAFcSdrpl~~~~~g~~~~~yYK  150 (212)
                      .+.+.-++|+.|-.. -=.--|...|||.+...-. . |+..-.|++.|+|||++.|+.|.++..      +.    .+.
T Consensus        59 ~~~~~~~~~~~~~~~-~~~~~~~LLPGE~v~~~~~~V~~~~p~~~~~~GtL~lTnyrLiF~~~~~------~~----~~~  127 (657)
T 1lw3_A           59 NFSPDLRVLRESNKL-AEMEEPPLLPGENIKDMAKDVTYICPFTGAVRGTLTVTNYRLYFKSMER------DP----PFV  127 (657)
T ss_dssp             -------------------CCCCCCTTCCEEEEEEEEEEEETTTEEEEEEEEEESSEEEEEESSS------SS----CEE
T ss_pred             chhhhhhhhhccccc-ccCCCCccCCCeeEEEEeCCEEEecCCCCceeEEEEEECCEEEEEecCC------Cc----ceE
Confidence            344444455554322 1123466799999984421 1 444446899999999999999998521      11    244


Q ss_pred             EEEeccccccccCCCCCCCCCC--CeEEEEEecCceeeeeeccchHHHHHHHHHHHh
Q 028224          151 VVIPLHQLRAVNPSSSRNNPAE--KYVQVISIDNHEFWFMGFLNYNGAVEWLQGALE  205 (212)
Q Consensus       151 VvIPL~kik~vnps~n~~nP~e--KYIqIvTvD~~eFWFMGFvnY~kA~k~Lq~a~~  205 (212)
                      +-|||..|..|..........+  -.|+|..-|- ..+=.+|-.=+...+.+-++|.
T Consensus       128 ~~IPL~~I~~Iekv~g~s~~g~~~~~l~I~CKDf-R~~~f~f~~~~~~~~~v~~~L~  183 (657)
T 1lw3_A          128 LDASLGVINRVEKIGGASSRGENSYGLETVCKDI-RNLRFAHKPEGRTRRSIFENLM  183 (657)
T ss_dssp             EEEEGGGEEEEEEECCTTCCSTTCSEEEEEETTT-EEEEEECCGGGCCHHHHHHHHH
T ss_pred             EEecccceEEEEecCCCcccCCCCceEEEEecCC-cEEEEEeCCccchHHHHHHHHH
Confidence            6799988877764321111111  2466666654 4444456543232333334443

>2hth_B Vacuolar protein sorting protein 36; GLUE domain, PH domain, viral budding, ubiquitin complex, protein transport; 2.70A {Homo sapiens} SCOP: b.55.1.12 PDB: 2dx5_A

Probab=83.46  E-value=1.2  Score=35.22  Aligned_cols=50  Identities=18%  Similarity=0.153  Sum_probs=30.3

Q ss_pred             CCCceeeEEEeeceeeeecCCCceeecCCCeeeeEEEEEEeccccccccCCCCCCCCCCCe
Q 028224          114 AGPVMGILYVSTAKLAFCSDNPLSYKSSGQTEWSYYKVVIPLHQLRAVNPSSSRNNPAEKY  174 (212)
Q Consensus       114 aGPVaG~LfiSt~kvAFcSdrpl~~~~~g~~~~~yYKVvIPL~kik~vnps~n~~nP~eKY  174 (212)
                      +.---|+|||+|.||.|-.+.. .-          .-+.|||..|+.+...+..-..+-|+
T Consensus        35 ~~~k~G~l~LTshRli~~d~~~-~~----------~s~~lpl~~v~~~e~~~~~f~~s~Ki   84 (140)
T 2hth_B           35 IKFDAGTLLLSTHRLIWRDQKN-HE----------CCMAILLSQIVFIEEQAAGIGKSAKI   84 (140)
T ss_dssp             SCCCCEEEEEESSEEEEEETTC-CS----------CCEEEEGGGEEEEEEECCTTSSCCEE
T ss_pred             CCCcCCEEEEecCEEEEecCCC-Cc----------eEEEEEhHHeeeeeeeccccccCceE
Confidence            3446799999999999965422 10          12566666666665554443333333

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	212
d1zsqa1	125	Myotubularin-related protein 2, N-terminal domain	96.25
d2rnrb1	108	TFIIH basal transcription factor complex p62 subun	88.62

>d1zsqa1 b.55.1.8 (A:74-198) Myotubularin-related protein 2, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: GRAM domain
domain: Myotubularin-related protein 2, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.25  E-value=0.0034  Score=46.92  Aligned_cols=98  Identities=16%  Similarity=0.190  Sum_probs=58.8

Q ss_pred             Chhhhhhhh--cceeeecCCCCceeeEEEeeceeeeecCCCceeecCCCeeeeEEEEEEeccccccccCCCCCC--CCCC
Q 028224           97 VPEEQLQNS--YACYLSTSAGPVMGILYVSTAKLAFCSDNPLSYKSSGQTEWSYYKVVIPLHQLRAVNPSSSRN--NPAE  172 (212)
Q Consensus        97 ~~~EkLlKa--~~CYLSTtaGPVaG~LfiSt~kvAFcSdrpl~~~~~g~~~~~yYKVvIPL~kik~vnps~n~~--nP~e  172 (212)
                      .|||.+.-.  -.=|+....||+-|+|||++-|+.|-++..     + .    .+.+-|||..|..|.......  +-.-
T Consensus         6 lpGE~i~~~~~~V~~~~p~~~~~~G~L~lTnyrliF~~~~~-----~-~----~~~~~ipl~~I~~v~k~~~~~~~~~~~   75 (125)
T d1zsqa1           6 LPGENIKDMAKDVTYICPFTGAVRGTLTVTNYRLYFKSMER-----D-P----PFVLDASLGVINRVEKIGGASSRGENS   75 (125)
T ss_dssp             CTTCCEEEEEEEEEEEETTTEEEEEEEEEESSEEEEEESSS-----S-S----CEEEEEEGGGEEEEEEECCTTCCSTTC
T ss_pred             CCCcEEEEeeccEEEEccCCCccceEEEEEeeEEEEEcCCC-----C-c----cEEEEeccceeeeeeecccccccCCcc
Confidence            477766421  123566668999999999999999976421     1 1    123569999888886432222  1222


Q ss_pred             CeEEEEEecCceeeeeecc-chHHHHHHHHHHHhh
Q 028224          173 KYVQVISIDNHEFWFMGFL-NYNGAVEWLQGALEA  206 (212)
Q Consensus       173 KYIqIvTvD~~eFWFMGFv-nY~kA~k~Lq~a~~~  206 (212)
                      -.|||+.-|---+=|. |. .- .--+.+.++|++
T Consensus        76 ~~L~I~CKDfr~~~f~-f~~e~-~~~~~v~~~L~~  108 (125)
T d1zsqa1          76 YGLETVCKDIRNLRFA-HKPEG-RTRRSIFENLMK  108 (125)
T ss_dssp             SEEEEEETTTEEEEEE-CCGGG-CCHHHHHHHHHH
T ss_pred             ccEEEEeccCeEEEEE-EcCCc-cHHHHHHHHHHH
Confidence            3699998886555443 32 21 222445566655

>d2rnrb1 b.55.1.9 (B:1-108) TFIIH basal transcription factor complex p62 subunit (BTF2-p62), N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: TFIIH domain
domain: TFIIH basal transcription factor complex p62 subunit (BTF2-p62), N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=88.62  E-value=1  Score=33.02  Aligned_cols=66  Identities=17%  Similarity=0.239  Sum_probs=48.1

Q ss_pred             ceeeEEEeeceeeeecCCCceeecCCCeeeeEEEEEEeccccccccCCCCCCCCCCCeEEEEEecCceeeeeeccchHHH
Q 028224          117 VMGILYVSTAKLAFCSDNPLSYKSSGQTEWSYYKVVIPLHQLRAVNPSSSRNNPAEKYVQVISIDNHEFWFMGFLNYNGA  196 (212)
Q Consensus       117 VaG~LfiSt~kvAFcSdrpl~~~~~g~~~~~yYKVvIPL~kik~vnps~n~~nP~eKYIqIvTvD~~eFWFMGFvnY~kA  196 (212)
                      +.|+|||++.+|+|..+.+=.           -+|.+++..|+.-..+-  +..+.-=++||.-|+-.|=|- |.|+.-|
T Consensus        20 ~~GtL~l~~d~l~W~p~~~~~-----------~~v~~~~~~I~~~q~Sp--e~s~Kv~Lkiv~~~~~s~~F~-Ftn~~~~   85 (108)
T d2rnrb1          20 QDGALYLMAERIAWAPEGKDR-----------FTISHMYADIKCQKISP--EGKAKIQLQLVLHAGDTTNFH-FSNESTA   85 (108)
T ss_dssp             CEEEEEECSSEEEEEESSCSS-----------CSEEEETTTEEEEEECC--TTCSSEEEEEEETTSCEEEEE-ECCTTTH
T ss_pred             CCcEEEEEcCeEEEEcCCCCC-----------ceEEEEhhhhhceecCC--CCcccceeEEEEeCCCeEEEE-ECChHHH
Confidence            479999999999997653211           23889999998765443  455556699999998887774 8888544