Citrus Sinensis ID: 028230

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-
Protein Sequence
MERRKFFREALLLSATVAVECTTVGLNTLFKAAASKGLSYYVFVAYSYPLATLALLPLPLIFRNTTTVVPSFKFSILSRIILLSFIGVLSQIFGYTGIACSSPTLSSAISNLTPAFTFTLAVLFRMEKLALRTLSTQAKIIGTMVSISGALVVVLYKGPTIFLGTSPSSTHSTNSLHWLMGSPSVSNWVTGGFLLAAQCFLLSIWSILLSY
Secondary Structure (PSIPRED)
cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHHEEEEEccccccHHHHHHHHccHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHcc
Secondary Structure Prediction (SSPRO)
ccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccHHEEEEHHHHHHHHHHHHHHccccEEccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHc
Coil and Loop (DISEMBL)
MERRKFFREALLLSATVAVECTTVGLNTLFKAAASKGLSYYVFVAYSyplatlallplplifrntttvvpsfKFSILSRIILLSFIGVLSQIFgytgiacssptlssaisnltpaFTFTLAVLFRMEKLALRTLSTQAKIIGTMVSISGALVVVLYkgptiflgtspssthstnslhwlmgspsvsnwvtGGFLLAAQCFLLSIWSILLSY
Flexible Loop (DISEMBL)
MERRKFFREALLLSATVAVECTTVGLNTLFKAAASKGLSYYVFVAYSYPLATLALLPLPLIFRNTTTVVPSFKFSILSRIILLSFIGVLSQIFGYTGIACSSPTLSSAISNLTPAFTFTLAVLFRMEKLALRTLSTQAKIIGTMVSISGALVVVLYKGPTIFLGTSPSSTHSTNSLHWLMGSPSVSNWVTGGFLLAAQCFLLSIWSILLSY
Low Complexity Region (SEG)
MERRKFFREALLLSATVAVECTTVGLNTLFKAAASKGLSYYVFVAYSYplatlallplplIFRNTTTVVPsfkfsilsriillsfiGVLSQIFGYTGIACSSPTLSSAISNLTPAFTFTLAVLFRMEKLALRTLSTQAKIIGTMVSISGALVVVLYKGPTIFLGTSPSSTHSTNSLHWLMGSPSVSNWVTGGFLLAAQCFLLSIWSILLSY
Disordered region (IsUnstruct)
*****FFREALLLSATVAVECTTVGLNTLFKAAASKGLSYYVFVAYSYPLATLALLPLPLIFRNTTTVVPSFKFSILSRIILLSFIGVLSQIFGYTGIACSSPTLSSAISNLTPAFTFTLAVLFRMEKLALRTLSTQAKIIGTMVSISGALVVVLYKGPTIFLGTS******TNSLHWLMGSPSVSNWVTGGFLLAAQCFLLSIWSILL**
Disordered Region (DISOPRED)
***********LLSATVAVECTTVGLNTLFKAAASKGLSYYVFVAYSYPLATLALLPLPLIFRNTTTVVPSFKFSILSRIILLSFIGVLSQIFGYTGIACSSPTLSSAISNLTPAFTFTLAVLFRMEKLALRTLSTQAKIIGTMVSISGALVVVLYKGPTIFLG**********************NWVTGGFLLAAQCFLLSIWSILLSY
Disordered Region (DISEMBL)
MERRKFFREALLLSATVAVECTTVGLNTLFKAAASKGLSYYVFVAYSYPLATLALLPLPLIFRNTTTVVPSFKFSILSRIILLSFIGVLSQIFGYTGIACSSPTLSSAISNLTPAFTFTLAVLFRMEKLALRTLSTQAKIIGTMVSISGALVVVLYKGPTIFLGTSPSSTHSTNSLHWLMGSPSVSNWVTGGFLLAAQCFLLSIWSILLSY
Disordered Region (DISPRO)
**RRKFFREALLLSATVAVECTTVGLNTLFKAAASKGLSYYVFVAYSYPLATLALLPLPLIFRNTTTVVPSFKFSILSRIILLSFIGVLSQIFGYTGIACSSPTLSSAISNLTPAFTFTLAVLFRMEKLALRTLSTQAKIIGTMVSISGALVVVLYKGPTIFLGTS*******************SNWVTGGFLLAAQCFLLSIWSILLSY
Transmembrane Helix (TMHMM)
iiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHii
Transmembrane Helix (HMMTOP)
iiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiii
Transmembrane Helix (MEMSAT)
iiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHiii
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHHoooHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHiii
TM Helix, Signal Peptide (Phobius)
SSSSSSSSSSSSSSSSSSSSSooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooooooooHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHii
Signal Peptide (SignalP HMM Mode)
SSSSSSSSSSSSSSSSSSSSSSooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MERRKFFREALLLSATVAVECTTVGLNTLFKAAASKGLSYYVFVAYSYPLATLALLPLPLIFRNTTTVVPSFKFSILSRIILLSFIGVLSQIFGYTGIACSSPTLSSAISNLTPAFTFTLAVLFRMEKLALRTLSTQAKIIGTMVSISGALVVVLYKGPTIFLGTSPSSTHSTNSLHWLMGSPSVSNWVTGGFLLAAQCFLLSIWSILLSY
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	211	2.2.26 [Sep-21-2011]
Q9FL08	368	WAT1-related protein At5g	yes	no	0.962	0.551	0.560	5e-52
F4KHA8	370	WAT1-related protein At5g	no	no	0.952	0.543	0.571	2e-51
Q94JU2	367	WAT1-related protein At3g	no	no	0.938	0.539	0.502	6e-44
F4JK59	347	WAT1-related protein At4g	no	no	0.800	0.487	0.547	1e-38
Q945L4	339	WAT1-related protein At5g	no	no	0.862	0.536	0.453	6e-36
Q9LRS5	353	WAT1-related protein At3g	no	no	0.938	0.560	0.477	7e-34
Q8VYZ7	360	WAT1-related protein At3g	no	no	0.952	0.558	0.485	1e-33
Q56X95	355	WAT1-related protein At3g	no	no	0.952	0.566	0.465	2e-32
F4IYZ0	358	WAT1-related protein At3g	no	no	0.952	0.561	0.455	3e-30
Q9FL41	402	WAT1-related protein At5g	no	no	0.696	0.365	0.406	1e-25

>sp|Q9FL08|WTR42_ARATH WAT1-related protein At5g40240 OS=Arabidopsis thaliana GN=At5g40240 PE=2 SV=1

 Score =  203 bits (517), Expect = 5e-52,   Method: Compositional matrix adjust.
 Identities = 115/205 (56%), Positives = 149/205 (72%), Gaps = 2/205 (0%)

Query: 4   RKFFREALLLSATVAVECTTVGLNTLFKAAASKGLSYYVFVAYSYPLATLALLPLPLIFR 63
           + F R+ +  +A  AVEC TVG NTLFKAA  +GLS+YVFV YSY ++TL LLPL +IF 
Sbjct: 12  KYFTRDVVPFAAMFAVECATVGSNTLFKAATLRGLSFYVFVFYSYIVSTLLLLPLSVIFG 71

Query: 64  NTTTVVPSFKFSILSRIILLSFIGVLSQIFGYTGIACSSPTLSSAISNLTPAFTFTLAVL 123
            +  + P+ K  +  +I LL  +G +SQI G  GIA SSPTL+SAISNLTPAFTFTLAV+
Sbjct: 72  RSRRL-PAAKSPLFFKIFLLGLVGFMSQIAGCKGIAYSSPTLASAISNLTPAFTFTLAVI 130

Query: 124 FRMEKLALRTLSTQAKIIGTMVSISGALVVVLYKGPTIFLGTSPSSTHSTNSLHWLMGSP 183
           FRME++ LR+ +TQAKIIG ++SISGALVVVLYKGP +    S ++   T +LH  + S 
Sbjct: 131 FRMEQVRLRSSATQAKIIGAILSISGALVVVLYKGPQVLASASFTTVLPTVTLHQQLTSI 190

Query: 184 SVSNWVTGGFLLAAQCFLLSIWSIL 208
             S+W+ GG LLA+Q FL+S+W IL
Sbjct: 191 E-SSWIIGGLLLASQYFLISVWYIL 214

Arabidopsis thaliana (taxid: 3702)

>sp|F4KHA8|WTR41_ARATH WAT1-related protein At5g40230 OS=Arabidopsis thaliana GN=At5g40230 PE=2 SV=1

 Score =  201 bits (512), Expect = 2e-51,   Method: Compositional matrix adjust.
 Identities = 116/203 (57%), Positives = 145/203 (71%), Gaps = 2/203 (0%)

Query: 6   FFREALLLSATVAVECTTVGLNTLFKAAASKGLSYYVFVAYSYPLATLALLPLPLIFRNT 65
           F R+ +  +A VAVEC TVG NTLFKAA  +GLS+YVFV Y+Y +ATL LLPL LIF  +
Sbjct: 15  FCRDVVPFTAMVAVECVTVGSNTLFKAATLRGLSFYVFVFYTYVVATLVLLPLSLIFGRS 74

Query: 66  TTVVPSFKFSILSRIILLSFIGVLSQIFGYTGIACSSPTLSSAISNLTPAFTFTLAVLFR 125
             + PS K  +   I LL+ +G +S I G  GI  SSPTL+SAISNLTPAFTFTLAV+FR
Sbjct: 75  KRL-PSAKTPVFFNIFLLALVGFMSLIVGCKGIEYSSPTLASAISNLTPAFTFTLAVIFR 133

Query: 126 MEKLALRTLSTQAKIIGTMVSISGALVVVLYKGPTIFLGTSPSSTHSTNSLHWLMGSPSV 185
           ME++ LR+ +TQAKIIGT+VSISGALVV+LYKGP +    S +    T SL+  + S   
Sbjct: 134 MEQIVLRSSATQAKIIGTIVSISGALVVILYKGPKVLTDASLTPPSPTISLYQHLTSFD- 192

Query: 186 SNWVTGGFLLAAQCFLLSIWSIL 208
           S+W+ GG LLA Q  L+S+W IL
Sbjct: 193 SSWIIGGLLLATQYLLVSVWYIL 215

Arabidopsis thaliana (taxid: 3702)

>sp|Q94JU2|WTR18_ARATH WAT1-related protein At3g28050 OS=Arabidopsis thaliana GN=At3g28050 PE=2 SV=1

 Score =  177 bits (448), Expect = 6e-44,   Method: Compositional matrix adjust.
 Identities = 105/209 (50%), Positives = 137/209 (65%), Gaps = 11/209 (5%)

Query: 1   MERRKFFREALLLSATVAVECTTVGLNTLFKAAASKGLSYYVFVAYSYPLATLALLP-LP 59
           M R+ F RE L ++A V +EC  VGLNTLFKAA  KG+S++VF+ YSY LA L LLP L 
Sbjct: 1   MARKYFQREVLPVTALVIMECANVGLNTLFKAATLKGMSFHVFIVYSYGLAALLLLPSLF 60

Query: 60  LIFRNTTTVVPSFKFSILSRIILLSFIGVLSQIFGYTGIACSSPTLSSAISNLTPAFTFT 119
             FR+ T  +P   FSIL +I+LL  IG  S I GYTGI  SSPTL+SAISNLTPAFTF 
Sbjct: 61  CSFRSRT--LPPMNFSILYKIVLLGIIGCCSNIMGYTGINYSSPTLASAISNLTPAFTFL 118

Query: 120 LAVLFRMEKLALRTLSTQAKIIGTMVSISGALVVVLYKGPTIFLGTSPSSTHSTNSLHWL 179
           LAV+FRME ++ +  S+ AK++GT+VSI GA +V LY GP +   + PS +  + S +  
Sbjct: 119 LAVVFRMESVSFKRTSSVAKMLGTVVSIGGAFIVTLYNGPVVIAKSPPSVSLRSQSTN-- 176

Query: 180 MGSPSVSNWVTGGFLLAAQCFLLSIWSIL 208
                  NW+ G   LA + F + +W I+
Sbjct: 177 ------PNWILGAGFLAVEYFCVPLWYIV 199

Arabidopsis thaliana (taxid: 3702)

>sp|F4JK59|WTR33_ARATH WAT1-related protein At4g15540 OS=Arabidopsis thaliana GN=At4g15540 PE=2 SV=1

 Score =  159 bits (402), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 93/170 (54%), Positives = 126/170 (74%), Gaps = 1/170 (0%)

Query: 4   RKFFREALLLSATVAVECTTVGLNTLFKAAASKGLSYYVFVAYSYPLATLALLPLPLIFR 63
           + F R+ +  +A +A+ECTTVG + L+KAA  +G S+YVFV Y+Y  ATL LL L LIF 
Sbjct: 9   KYFKRDVVPFTAMIAIECTTVGSSILYKAATLRGFSFYVFVFYAYVGATLVLLLLSLIFG 68

Query: 64  NTTTVVPSFKFSILSRIILLSFIGVLSQIFGYTGIACSSPTLSSAISNLTPAFTFTLAVL 123
            + ++ P+ K S+  +I LL+ +G+ S++ G  GI  SSPTLSSAISNLTPAFTF LA+ 
Sbjct: 69  RSRSL-PTAKSSLFFKIFLLALLGLTSRVAGCKGIEYSSPTLSSAISNLTPAFTFILAIF 127

Query: 124 FRMEKLALRTLSTQAKIIGTMVSISGALVVVLYKGPTIFLGTSPSSTHST 173
           FRME++ LR+ +TQAKIIGT+VSISGALV+VLYKGP + +  S +S  S+
Sbjct: 128 FRMEQVMLRSSATQAKIIGTIVSISGALVIVLYKGPKLLVAASFTSFESS 177

Arabidopsis thaliana (taxid: 3702)

>sp|Q945L4|WTR40_ARATH WAT1-related protein At5g40210 OS=Arabidopsis thaliana GN=At5g40210 PE=2 SV=1

 Score =  150 bits (379), Expect = 6e-36,   Method: Compositional matrix adjust.
 Identities = 93/205 (45%), Positives = 127/205 (61%), Gaps = 23/205 (11%)

Query: 8   REALLLSATVAVECTTVGLNTLFKAAASKGLSYYVFVAYSYPLATLALLPLPLI-FRNTT 66
           R+  +L+A V  E + VG+NTL KAA SKGLS +V + YSY   +L LLPL    FR+ +
Sbjct: 9   RDGWILTAMVVTEFSNVGVNTLVKAATSKGLSPFVVLVYSYTFGSLLLLPLTFFSFRSRS 68

Query: 67  TVVPSFKFSILSRIILLSFIGVLSQIFGYTGIACSSPTLSSAISNLTPAFTFTLAVLFRM 126
             +P   FSIL  + +L  I    QI GY GI  SSPTLSSA+SN+ PAFTF LAV+FRM
Sbjct: 69  --LPPLTFSILCNMGILGLIASAFQILGYNGIKYSSPTLSSAMSNVNPAFTFILAVVFRM 126

Query: 127 EKLALRTLSTQAKIIGTMVSISGALVVVLYKGPTIFLGTSPSSTHSTNSLHWLMGSPSVS 186
           E ++L   S+ AK++GT++SI GALVV LY GP +       S+H              S
Sbjct: 127 ENISLGKKSSVAKVLGTILSIIGALVVTLYHGPMLM------SSH--------------S 166

Query: 187 NWVTGGFLLAAQCFLLSIWSILLSY 211
           +W+ GG LLA Q  L+S+  +++++
Sbjct: 167 DWIIGGGLLALQYILVSVSYLVMAH 191

Arabidopsis thaliana (taxid: 3702)

>sp|Q9LRS5|WTR22_ARATH WAT1-related protein At3g28100 OS=Arabidopsis thaliana GN=At3g28100 PE=2 SV=1

 Score =  143 bits (361), Expect = 7e-34,   Method: Compositional matrix adjust.
 Identities = 96/201 (47%), Positives = 132/201 (65%), Gaps = 3/201 (1%)

Query: 8   REALLLSATVAVECTTVGLNTLFKAAASKGLSYYVFVAYSYPLATLALLPLPLIFRNTTT 67
           REA+ L+A +A E   VG++TLFK A SKGL+ Y F+ YSY LA+L LLP    F + + 
Sbjct: 10  REAVFLTAMLATETGVVGISTLFKVATSKGLNLYAFLGYSYLLASLLLLPSLF-FTDRSR 68

Query: 68  VVPSFKFSILSRIILLSFIGVLSQIFGYTGIACSSPTLSSAISNLTPAFTFTLAVLFRME 127
            +P    SILS+I LL  +G +  I GY GI  SSPTL+SAISN+TPA TF LA++FRME
Sbjct: 69  SLPPLSLSILSKIGLLGLLGSMYVITGYIGIEYSSPTLASAISNITPALTFILAIIFRME 128

Query: 128 KLALRTLSTQAKIIGTMVSISGALVVVLYKGPTIFLGTSPSSTHSTNSLHWLMGSPSVSN 187
           K++ +  S+ AK++GT++S+ GALVVVLY GP +F+ +SP   +          S S S+
Sbjct: 129 KVSFKERSSVAKVMGTILSLIGALVVVLYHGPRVFVASSPPYINFRQLS--PPLSSSNSD 186

Query: 188 WVTGGFLLAAQCFLLSIWSIL 208
           W+ GG LL  +   +S+  IL
Sbjct: 187 WLIGGALLTIRDIFVSVSFIL 207

Arabidopsis thaliana (taxid: 3702)

>sp|Q8VYZ7|WTR20_ARATH WAT1-related protein At3g28070 OS=Arabidopsis thaliana GN=At3g28070 PE=2 SV=1

 Score =  142 bits (359), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 99/204 (48%), Positives = 138/204 (67%), Gaps = 3/204 (1%)

Query: 8   REALLLSATVAVECTTVGLNTLFKAAASKGLSYYVFVAYSYPLATLALLPLPLIFRNTTT 67
           REA+ L+A + VE + VG++TLFK A SKGL+ Y F+ YSY LA+L LLP  L F N ++
Sbjct: 13  REAVFLTAMLVVETSVVGISTLFKFATSKGLNIYPFLGYSYLLASLLLLPS-LFFTNRSS 71

Query: 68  VVPSFKFSILSRIILLSFIGVLSQIFGYTGIACSSPTLSSAISNLTPAFTFTLAVLFRME 127
            +P    SILS+I LL F+G +  I GY GI  SSPTL+SAI+N+TPA TF LA++FRME
Sbjct: 72  SLPPLSVSILSKIGLLGFLGSMYVITGYIGIEYSSPTLASAINNITPALTFILAIIFRME 131

Query: 128 KLALRTLSTQAKIIGTMVSISGALVVVLYKGPTIFLGTSPSSTHSTNSLHWLMGSPSVSN 187
           K++ +  S+ AK++GT++S+ GALVV+ Y GP +FL +SP   +       L  S S S+
Sbjct: 132 KVSFKERSSLAKLMGTILSLIGALVVIFYHGPRVFLASSPPYVNFRQFSPPL--SSSNSD 189

Query: 188 WVTGGFLLAAQCFLLSIWSILLSY 211
           W+ GG LL  Q   +S+  IL ++
Sbjct: 190 WLIGGALLTMQGIFVSVSFILQAH 213

Arabidopsis thaliana (taxid: 3702)

>sp|Q56X95|WTR23_ARATH WAT1-related protein At3g28130 OS=Arabidopsis thaliana GN=At3g28130 PE=2 SV=1

 Score =  139 bits (349), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 95/204 (46%), Positives = 132/204 (64%), Gaps = 3/204 (1%)

Query: 8   REALLLSATVAVECTTVGLNTLFKAAASKGLSYYVFVAYSYPLATLALLPLPLIFRNTTT 67
           R+A+LL+A +A E   V +NTLFKAA SKGL+ Y F+ YSY + ++ LLP   IF   + 
Sbjct: 9   RDAVLLTAMLATETGNVAMNTLFKAATSKGLNSYTFLIYSYLIGSIVLLP-SHIFSYRSR 67

Query: 68  VVPSFKFSILSRIILLSFIGVLSQIFGYTGIACSSPTLSSAISNLTPAFTFTLAVLFRME 127
            +PS   SIL +I +L  +G    I G+ GI  S+PTL+SAISN+ PA TF LA++FRME
Sbjct: 68  SLPSLSLSILCKIGVLGLLGSTYLITGFIGIEYSNPTLASAISNINPAITFILAIIFRME 127

Query: 128 KLALRTLSTQAKIIGTMVSISGALVVVLYKGPTIFLGTSPSSTHSTNSLHWLMGSPSVSN 187
           K + +  S+ AK++GT+VS+ GALVVVLY GP +F  +SP        L  L  S S S+
Sbjct: 128 KASFKEKSSVAKMVGTIVSLVGALVVVLYHGPRVFTPSSPPFPQLRQLL--LPLSSSNSD 185

Query: 188 WVTGGFLLAAQCFLLSIWSILLSY 211
           W+ GG LLA +  L+ +  IL ++
Sbjct: 186 WIIGGCLLAIKDTLVPVAFILQAH 209

Arabidopsis thaliana (taxid: 3702)

>sp|F4IYZ0|WTR21_ARATH WAT1-related protein At3g28080 OS=Arabidopsis thaliana GN=At3g28080 PE=2 SV=1

 Score =  131 bits (330), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 93/204 (45%), Positives = 132/204 (64%), Gaps = 3/204 (1%)

Query: 8   REALLLSATVAVECTTVGLNTLFKAAASKGLSYYVFVAYSYPLATLALLPLPLIFRNTTT 67
           REA+ L+A +A E + VGL+TLFK A SKGL+ Y F++YSY LA+L LLP    F N + 
Sbjct: 10  REAVFLTAMLAGETSIVGLSTLFKVATSKGLNIYPFLSYSYLLASLLLLPSLF-FTNRSR 68

Query: 68  VVPSFKFSILSRIILLSFIGVLSQIFGYTGIACSSPTLSSAISNLTPAFTFTLAVLFRME 127
            +P    SILS+I LL F+G +  I G  GI  S+PTL+SAI N+ PA TF LAV+FRME
Sbjct: 69  SLPPLSASILSKIGLLGFLGSMYVITGGIGIEYSNPTLASAIGNIVPALTFILAVIFRME 128

Query: 128 KLALRTLSTQAKIIGTMVSISGALVVVLYKGPTIFLGTSPSSTHSTNSLHWLMGSPSVSN 187
           K++ +  S+ AK++GT++S+ GA VV+ Y GP +F+ +SP   +          S S S+
Sbjct: 129 KVSFKERSSVAKVMGTILSLIGAFVVIFYHGPRVFVASSPPYLNFRQLS--PPLSSSKSD 186

Query: 188 WVTGGFLLAAQCFLLSIWSILLSY 211
           W+ GG +L  Q   +S+  IL ++
Sbjct: 187 WLIGGAILTIQGIFVSVSFILQTH 210

Arabidopsis thaliana (taxid: 3702)

>sp|Q9FL41|WTR38_ARATH WAT1-related protein At5g07050 OS=Arabidopsis thaliana GN=At5g07050 PE=2 SV=1

 Score =  115 bits (289), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 61/150 (40%), Positives = 93/150 (62%), Gaps = 3/150 (2%)

Query: 15  ATVAVECTTVGLNTLFKAAASKGLSYYVFVAYSYPLATLALLPLPLIFRNTTTVVPSFKF 74
           A ++++    G+N + K + + G+S+YV V Y + +AT  + P    F       P   F
Sbjct: 21  AMISLQFGYAGMNIITKISLNTGMSHYVLVVYRHAIATAVIAPFAFFFERKAQ--PKITF 78

Query: 75  SILSRIILLSFIG-VLSQIFGYTGIACSSPTLSSAISNLTPAFTFTLAVLFRMEKLALRT 133
           SI  ++ +L  +G V+ Q F Y G+  +SPT S A+SN+ PA TF LAVLFRME L L+ 
Sbjct: 79  SIFMQLFILGLLGPVIDQNFYYMGLKYTSPTFSCAMSNMLPAMTFILAVLFRMEMLDLKK 138

Query: 134 LSTQAKIIGTMVSISGALVVVLYKGPTIFL 163
           L  QAKI GT+V+++GA+++ +YKGP + L
Sbjct: 139 LWCQAKIAGTVVTVAGAMLMTIYKGPIVEL 168

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	211
225452526	360	PREDICTED: auxin-induced protein 5NG4 [V	0.976	0.572	0.542	9e-51
42568214	368	nodulin MtN21 /EamA-like transporter fam	0.962	0.551	0.560	3e-50
334188088	382	nodulin MtN21 /EamA-like transporter fam	0.962	0.531	0.560	4e-50
15242612	370	nodulin MtN21 /EamA-like transporter fam	0.952	0.543	0.571	1e-49
449449196	377	PREDICTED: auxin-induced protein 5NG4-li	0.943	0.527	0.535	2e-49
297801562	367	hypothetical protein ARALYDRAFT_330483 [	0.952	0.547	0.571	8e-49
10177510	346	nodulin-like protein [Arabidopsis thalia	0.900	0.549	0.588	4e-48
255552664	419	Auxin-induced protein 5NG4, putative [Ri	0.914	0.460	0.495	3e-47
296087699	345	unnamed protein product [Vitis vinifera]	0.900	0.550	0.561	3e-47
297801560	368	nodulin MtN21 family protein [Arabidopsi	0.962	0.551	0.570	5e-47

>gi|225452526|ref|XP_002279762.1| PREDICTED: auxin-induced protein 5NG4 [Vitis vinifera]

 Score =  205 bits (522), Expect = 9e-51,   Method: Compositional matrix adjust.
 Identities = 115/212 (54%), Positives = 144/212 (67%), Gaps = 6/212 (2%)

Query: 1   MERRKFFREALLLSATVAVECTTVGLNTLFKAAASKGLSYYVFVAYSYPLATLALLPLPL 60
           M R  ++R+ +  SA VA+ECT VGLNTL+KAA  +GL+Y+VFV Y+Y +A L LLP P 
Sbjct: 1   MRRGDWYRDVVSFSAMVALECTNVGLNTLYKAATLRGLNYHVFVVYAYGIAALVLLPSPF 60

Query: 61  IFRNTTTVVPSFKFSILSRIILLSFIGVLSQIFGYTGIACSSPTLSSAISNLTPAFTFTL 120
           I  +   V+P   F +L +I +L  IG  SQ  GY GI  SSPTL+SAISNL PAFTF L
Sbjct: 61  I-THRRGVLPPLSFPVLCKIFVLGLIGCASQTMGYRGINISSPTLASAISNLVPAFTFIL 119

Query: 121 AVLFRMEKLALRTLSTQAKIIGTMVSISGALVVVLYKGPTIFLGTSPS-STHSTNSLHWL 179
           AV+FRMEKLALR+ S+QAKIIGT+VSISGA VV LYKGP I L  SPS S H     H L
Sbjct: 120 AVIFRMEKLALRSSSSQAKIIGTIVSISGAFVVTLYKGPPIILTPSPSISLHQPP--HPL 177

Query: 180 MGSPSVSNWVTGGFLLAAQCFLLSIWSILLSY 211
             S   S+W+ G   L+ + FL  +W I+ ++
Sbjct: 178 RSSE--SSWIIGALFLSVEYFLTPVWYIVQAH 207

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|42568214|ref|NP_198840.2| nodulin MtN21 /EamA-like transporter family protein [Arabidopsis thaliana] gi|10177511|dbj|BAB10905.1| nodulin-like protein [Arabidopsis thaliana] gi|30725298|gb|AAP37671.1| At5g40240 [Arabidopsis thaliana] gi|110743630|dbj|BAE99652.1| hypothetical protein [Arabidopsis thaliana] gi|332007140|gb|AED94523.1| nodulin MtN21 /EamA-like transporter family protein [Arabidopsis thaliana]

 Score =  203 bits (517), Expect = 3e-50,   Method: Compositional matrix adjust.
 Identities = 115/205 (56%), Positives = 149/205 (72%), Gaps = 2/205 (0%)

Query: 4   RKFFREALLLSATVAVECTTVGLNTLFKAAASKGLSYYVFVAYSYPLATLALLPLPLIFR 63
           + F R+ +  +A  AVEC TVG NTLFKAA  +GLS+YVFV YSY ++TL LLPL +IF 
Sbjct: 12  KYFTRDVVPFAAMFAVECATVGSNTLFKAATLRGLSFYVFVFYSYIVSTLLLLPLSVIFG 71

Query: 64  NTTTVVPSFKFSILSRIILLSFIGVLSQIFGYTGIACSSPTLSSAISNLTPAFTFTLAVL 123
            +  + P+ K  +  +I LL  +G +SQI G  GIA SSPTL+SAISNLTPAFTFTLAV+
Sbjct: 72  RSRRL-PAAKSPLFFKIFLLGLVGFMSQIAGCKGIAYSSPTLASAISNLTPAFTFTLAVI 130

Query: 124 FRMEKLALRTLSTQAKIIGTMVSISGALVVVLYKGPTIFLGTSPSSTHSTNSLHWLMGSP 183
           FRME++ LR+ +TQAKIIG ++SISGALVVVLYKGP +    S ++   T +LH  + S 
Sbjct: 131 FRMEQVRLRSSATQAKIIGAILSISGALVVVLYKGPQVLASASFTTVLPTVTLHQQLTSI 190

Query: 184 SVSNWVTGGFLLAAQCFLLSIWSIL 208
             S+W+ GG LLA+Q FL+S+W IL
Sbjct: 191 E-SSWIIGGLLLASQYFLISVWYIL 214

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|334188088|ref|NP_001190441.1| nodulin MtN21 /EamA-like transporter family protein [Arabidopsis thaliana] gi|332007141|gb|AED94524.1| nodulin MtN21 /EamA-like transporter family protein [Arabidopsis thaliana]

 Score =  203 bits (516), Expect = 4e-50,   Method: Compositional matrix adjust.
 Identities = 115/205 (56%), Positives = 149/205 (72%), Gaps = 2/205 (0%)

Query: 4   RKFFREALLLSATVAVECTTVGLNTLFKAAASKGLSYYVFVAYSYPLATLALLPLPLIFR 63
           + F R+ +  +A  AVEC TVG NTLFKAA  +GLS+YVFV YSY ++TL LLPL +IF 
Sbjct: 26  KYFTRDVVPFAAMFAVECATVGSNTLFKAATLRGLSFYVFVFYSYIVSTLLLLPLSVIFG 85

Query: 64  NTTTVVPSFKFSILSRIILLSFIGVLSQIFGYTGIACSSPTLSSAISNLTPAFTFTLAVL 123
            +  + P+ K  +  +I LL  +G +SQI G  GIA SSPTL+SAISNLTPAFTFTLAV+
Sbjct: 86  RSRRL-PAAKSPLFFKIFLLGLVGFMSQIAGCKGIAYSSPTLASAISNLTPAFTFTLAVI 144

Query: 124 FRMEKLALRTLSTQAKIIGTMVSISGALVVVLYKGPTIFLGTSPSSTHSTNSLHWLMGSP 183
           FRME++ LR+ +TQAKIIG ++SISGALVVVLYKGP +    S ++   T +LH  + S 
Sbjct: 145 FRMEQVRLRSSATQAKIIGAILSISGALVVVLYKGPQVLASASFTTVLPTVTLHQQLTSI 204

Query: 184 SVSNWVTGGFLLAAQCFLLSIWSIL 208
             S+W+ GG LLA+Q FL+S+W IL
Sbjct: 205 E-SSWIIGGLLLASQYFLISVWYIL 228

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|15242612|ref|NP_198839.1| nodulin MtN21 /EamA-like transporter family protein [Arabidopsis thaliana] gi|332007139|gb|AED94522.1| nodulin MtN21 /EamA-like transporter family protein [Arabidopsis thaliana]

 Score =  201 bits (512), Expect = 1e-49,   Method: Compositional matrix adjust.
 Identities = 116/203 (57%), Positives = 145/203 (71%), Gaps = 2/203 (0%)

Query: 6   FFREALLLSATVAVECTTVGLNTLFKAAASKGLSYYVFVAYSYPLATLALLPLPLIFRNT 65
           F R+ +  +A VAVEC TVG NTLFKAA  +GLS+YVFV Y+Y +ATL LLPL LIF  +
Sbjct: 15  FCRDVVPFTAMVAVECVTVGSNTLFKAATLRGLSFYVFVFYTYVVATLVLLPLSLIFGRS 74

Query: 66  TTVVPSFKFSILSRIILLSFIGVLSQIFGYTGIACSSPTLSSAISNLTPAFTFTLAVLFR 125
             + PS K  +   I LL+ +G +S I G  GI  SSPTL+SAISNLTPAFTFTLAV+FR
Sbjct: 75  KRL-PSAKTPVFFNIFLLALVGFMSLIVGCKGIEYSSPTLASAISNLTPAFTFTLAVIFR 133

Query: 126 MEKLALRTLSTQAKIIGTMVSISGALVVVLYKGPTIFLGTSPSSTHSTNSLHWLMGSPSV 185
           ME++ LR+ +TQAKIIGT+VSISGALVV+LYKGP +    S +    T SL+  + S   
Sbjct: 134 MEQIVLRSSATQAKIIGTIVSISGALVVILYKGPKVLTDASLTPPSPTISLYQHLTSFD- 192

Query: 186 SNWVTGGFLLAAQCFLLSIWSIL 208
           S+W+ GG LLA Q  L+S+W IL
Sbjct: 193 SSWIIGGLLLATQYLLVSVWYIL 215

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449449196|ref|XP_004142351.1| PREDICTED: auxin-induced protein 5NG4-like [Cucumis sativus]

 Score =  201 bits (510), Expect = 2e-49,   Method: Compositional matrix adjust.
 Identities = 112/209 (53%), Positives = 139/209 (66%), Gaps = 10/209 (4%)

Query: 4   RKFFREALLLSATVAVECTTVGLNTLFKAAASKGLSYYVFVAYSYPLATLALLPLPLIFR 63
           R      L   A +A+EC  VGLNTLFKAA + G+S++VFV YSY  A L LLP P I R
Sbjct: 6   RSLMEGVLPFPAMMAMECINVGLNTLFKAATAAGMSHHVFVVYSYSFAALLLLPSPFISR 65

Query: 64  NTTTVVPSFKFSILSRIILLSFIGVLSQIFGYTGIACSSPTLSSAISNLTPAFTFTLAVL 123
            T+T +P   FSI S+I LL  IG  SQI GYTGI  SSPTL+SAISNL PAFTF LA++
Sbjct: 66  -TSTRLPPLNFSITSKIALLGLIGSCSQIMGYTGINYSSPTLASAISNLVPAFTFILAII 124

Query: 124 FRMEKLALRTLSTQAKIIGTMVSISGALVVVLYKGPTIFLGTSP----SSTHSTNSLHWL 179
           FRMEK+ L++ S+QAK++GT++SISGA VV  YKGP I   +SP    S  H++  L   
Sbjct: 125 FRMEKVVLKSNSSQAKVMGTIISISGAFVVTFYKGPRIIFSSSPTISLSLHHNSQQL--- 181

Query: 180 MGSPSVSNWVTGGFLLAAQCFLLSIWSIL 208
             S S SNWV G  LL A+  L+ +W I+
Sbjct: 182 --SSSDSNWVIGSLLLTAEYILVPLWYIV 208

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297801562|ref|XP_002868665.1| hypothetical protein ARALYDRAFT_330483 [Arabidopsis lyrata subsp. lyrata] gi|297314501|gb|EFH44924.1| hypothetical protein ARALYDRAFT_330483 [Arabidopsis lyrata subsp. lyrata]

 Score =  199 bits (505), Expect = 8e-49,   Method: Compositional matrix adjust.
 Identities = 116/203 (57%), Positives = 144/203 (70%), Gaps = 2/203 (0%)

Query: 6   FFREALLLSATVAVECTTVGLNTLFKAAASKGLSYYVFVAYSYPLATLALLPLPLIFRNT 65
           F R+ +  +A VAVEC TVG NTLFKAA  +GLS+YVFV Y+Y  ATL LLPL LIF  +
Sbjct: 15  FCRDVVPFTAMVAVECVTVGSNTLFKAATLRGLSFYVFVFYTYVGATLVLLPLSLIFGRS 74

Query: 66  TTVVPSFKFSILSRIILLSFIGVLSQIFGYTGIACSSPTLSSAISNLTPAFTFTLAVLFR 125
             + PS K  +   I LL+ +G +S I G  GI  SSPTL+SAISNLTPAFTFTLAV+FR
Sbjct: 75  KRL-PSAKTPVFFYIFLLALVGFMSLIVGCKGIEYSSPTLASAISNLTPAFTFTLAVIFR 133

Query: 126 MEKLALRTLSTQAKIIGTMVSISGALVVVLYKGPTIFLGTSPSSTHSTNSLHWLMGSPSV 185
           ME++ LR+ +TQAKIIGT+VSISGALVVVLYKGP +    + +    T SL+  + S   
Sbjct: 134 MEQVVLRSSATQAKIIGTIVSISGALVVVLYKGPKVLTDATLTPPSPTISLYQHLTSFD- 192

Query: 186 SNWVTGGFLLAAQCFLLSIWSIL 208
           S+W+ GG LLA Q  L+S+W IL
Sbjct: 193 SSWIIGGLLLATQYLLVSVWYIL 215

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|10177510|dbj|BAB10904.1| nodulin-like protein [Arabidopsis thaliana]

 Score =  196 bits (499), Expect = 4e-48,   Method: Compositional matrix adjust.
 Identities = 113/192 (58%), Positives = 139/192 (72%), Gaps = 2/192 (1%)

Query: 17  VAVECTTVGLNTLFKAAASKGLSYYVFVAYSYPLATLALLPLPLIFRNTTTVVPSFKFSI 76
           VAVEC TVG NTLFKAA  +GLS+YVFV Y+Y +ATL LLPL LIF  +  + PS K  +
Sbjct: 2   VAVECVTVGSNTLFKAATLRGLSFYVFVFYTYVVATLVLLPLSLIFGRSKRL-PSAKTPV 60

Query: 77  LSRIILLSFIGVLSQIFGYTGIACSSPTLSSAISNLTPAFTFTLAVLFRMEKLALRTLST 136
              I LL+ +G +S I G  GI  SSPTL+SAISNLTPAFTFTLAV+FRME++ LR+ +T
Sbjct: 61  FFNIFLLALVGFMSLIVGCKGIEYSSPTLASAISNLTPAFTFTLAVIFRMEQIVLRSSAT 120

Query: 137 QAKIIGTMVSISGALVVVLYKGPTIFLGTSPSSTHSTNSLHWLMGSPSVSNWVTGGFLLA 196
           QAKIIGT+VSISGALVV+LYKGP +    S +    T SL+  + S   S+W+ GG LLA
Sbjct: 121 QAKIIGTIVSISGALVVILYKGPKVLTDASLTPPSPTISLYQHLTSFD-SSWIIGGLLLA 179

Query: 197 AQCFLLSIWSIL 208
            Q  L+S+W IL
Sbjct: 180 TQYLLVSVWYIL 191

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255552664|ref|XP_002517375.1| Auxin-induced protein 5NG4, putative [Ricinus communis] gi|223543386|gb|EEF44917.1| Auxin-induced protein 5NG4, putative [Ricinus communis]

 Score =  193 bits (491), Expect = 3e-47,   Method: Compositional matrix adjust.
 Identities = 104/210 (49%), Positives = 140/210 (66%), Gaps = 17/210 (8%)

Query: 4   RKFFREALLLSATVAVECTTVGLNTLFKAAASKGLSYYVFVAYSYPLATLALLPLPLIFR 63
           R ++ + L  +  V +EC  VGLNTL+KAA  +G++Y+VF+ Y+Y +A L LLP P I  
Sbjct: 66  RYWYEDVLPFTTLVTMECVNVGLNTLYKAATLEGMNYHVFIVYAYAIAALVLLPAPFI-S 124

Query: 64  NTTTVVPSFKFSILSRIILLSFIGVLSQIFGYTGIACSSPTLSSAISNLTPAFTFTLAVL 123
           + + ++P   FSIL +I LL  IG  SQI GYTGI  SSPTLSSAISNLTPAFTF LA++
Sbjct: 125 SRSRMLPPLSFSILCKIGLLGVIGSSSQILGYTGINYSSPTLSSAISNLTPAFTFILAII 184

Query: 124 FRMEKLALRTLSTQAKIIGTMVSISGALVVVLYKGPTIFLGTSP-----SSTHSTNSLHW 178
           FRME+++LR  S+QAK++GT+VSI+GA VV LYKGP IF+ +SP         S+N    
Sbjct: 185 FRMERVSLRKRSSQAKVLGTIVSIAGAFVVTLYKGPLIFIASSPFIALDQPPRSSN---- 240

Query: 179 LMGSPSVSNWVTGGFLLAAQCFLLSIWSIL 208
                   NW+ GG  L A+  L+ +W I+
Sbjct: 241 -------PNWILGGIFLTAEYILVPLWYIV 263

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|296087699|emb|CBI34955.3| unnamed protein product [Vitis vinifera]

 Score =  193 bits (491), Expect = 3e-47,   Method: Compositional matrix adjust.
 Identities = 110/196 (56%), Positives = 135/196 (68%), Gaps = 6/196 (3%)

Query: 17  VAVECTTVGLNTLFKAAASKGLSYYVFVAYSYPLATLALLPLPLIFRNTTTVVPSFKFSI 76
           VA+ECT VGLNTL+KAA  +GL+Y+VFV Y+Y +A L LLP P I  +   V+P   F +
Sbjct: 2   VALECTNVGLNTLYKAATLRGLNYHVFVVYAYGIAALVLLPSPFI-THRRGVLPPLSFPV 60

Query: 77  LSRIILLSFIGVLSQIFGYTGIACSSPTLSSAISNLTPAFTFTLAVLFRMEKLALRTLST 136
           L +I +L  IG  SQ  GY GI  SSPTL+SAISNL PAFTF LAV+FRMEKLALR+ S+
Sbjct: 61  LCKIFVLGLIGCASQTMGYRGINISSPTLASAISNLVPAFTFILAVIFRMEKLALRSSSS 120

Query: 137 QAKIIGTMVSISGALVVVLYKGPTIFLGTSPS-STHSTNSLHWLMGSPSVSNWVTGGFLL 195
           QAKIIGT+VSISGA VV LYKGP I L  SPS S H     H L  S   S+W+ G   L
Sbjct: 121 QAKIIGTIVSISGAFVVTLYKGPPIILTPSPSISLHQPP--HPLRSSE--SSWIIGALFL 176

Query: 196 AAQCFLLSIWSILLSY 211
           + + FL  +W I+ ++
Sbjct: 177 SVEYFLTPVWYIVQAH 192

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297801560|ref|XP_002868664.1| nodulin MtN21 family protein [Arabidopsis lyrata subsp. lyrata] gi|297314500|gb|EFH44923.1| nodulin MtN21 family protein [Arabidopsis lyrata subsp. lyrata]

 Score =  193 bits (490), Expect = 5e-47,   Method: Compositional matrix adjust.
 Identities = 117/205 (57%), Positives = 145/205 (70%), Gaps = 2/205 (0%)

Query: 4   RKFFREALLLSATVAVECTTVGLNTLFKAAASKGLSYYVFVAYSYPLATLALLPLPLIFR 63
           R F R+ +  +A  AVECTTVG NTLFKAA  +GLS+YVFV YSY ++TL LLPL LIF 
Sbjct: 12  RYFTRDVVPFAAMFAVECTTVGSNTLFKAATIRGLSFYVFVFYSYVVSTLLLLPLSLIFG 71

Query: 64  NTTTVVPSFKFSILSRIILLSFIGVLSQIFGYTGIACSSPTLSSAISNLTPAFTFTLAVL 123
            +  + PS K     +I LL  +G +SQI G  GI  SSPTL+SAISNLTPAFTFTLAV+
Sbjct: 72  RSRRL-PSAKSPFFFKIFLLGLVGFMSQIAGCKGIEYSSPTLASAISNLTPAFTFTLAVI 130

Query: 124 FRMEKLALRTLSTQAKIIGTMVSISGALVVVLYKGPTIFLGTSPSSTHSTNSLHWLMGSP 183
           FRME++ LR+ +TQAKIIG ++SISGALV++LYKGP +    S +    T SLH  + S 
Sbjct: 131 FRMEQVRLRSSATQAKIIGAILSISGALVILLYKGPQVLAAASFTPLSPTISLHQHLASL 190

Query: 184 SVSNWVTGGFLLAAQCFLLSIWSIL 208
             S W  GG LLA+Q FL+S+W IL
Sbjct: 191 E-SKWTIGGLLLASQYFLISVWYIL 214

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	211
TAIR|locus:2173752	370	UMAMIT37 "AT5G40230" [Arabidop	0.952	0.543	0.507	2.8e-43
TAIR|locus:2130344	347	UMAMIT38 "AT4G15540" [Arabidop	0.909	0.553	0.451	1.3e-38
TAIR|locus:2091363	367	UMAMIT41 "AT3G28050" [Arabidop	0.938	0.539	0.444	6.3e-37
TAIR|locus:2091383	360	UMAMIT46 "AT3G28070" [Arabidop	0.952	0.558	0.411	9.5e-34
TAIR|locus:2091338	353	UMAMIT45 "AT3G28100" [Arabidop	0.938	0.560	0.417	4.1e-33
TAIR|locus:2091368	355	UMAMIT44 "AT3G28130" [Arabidop	0.952	0.566	0.421	2.3e-32
TAIR|locus:2173737	339	UMAMIT42 "Usually multiple aci	0.772	0.480	0.419	3.8e-31
TAIR|locus:2091393	358	UMAMIT47 "AT3G28080" [Arabidop	0.952	0.561	0.392	5.4e-31
TAIR|locus:2169414	402	UMAMIT9 "Usually multiple acid	0.696	0.365	0.36	1.1e-19
TAIR|locus:2173189	377	UMAMIT15 "Usually multiple aci	0.943	0.527	0.295	5e-18

TAIR|locus:2173752 UMAMIT37 "AT5G40230" [Arabidopsis thaliana (taxid:3702)]

 Score = 457 (165.9 bits), Expect = 2.8e-43, P = 2.8e-43
 Identities = 103/203 (50%), Positives = 128/203 (63%)

Query:     6 FFREALLLSATVAVECTTVGLNTLFKAAASKGLSYYVFVAYSYXXXXXXXXXXXXIFRNT 65
             F R+ +  +A VAVEC TVG NTLFKAA  +GLS+YVFV Y+Y            IF  +
Sbjct:    15 FCRDVVPFTAMVAVECVTVGSNTLFKAATLRGLSFYVFVFYTYVVATLVLLPLSLIFGRS 74

Query:    66 TTVVPXXXXXXXXXXXXXXXXGVLSQIFGYTGIACSSPTLSSAISNLTPAFTFTLAVLFR 125
               + P                G +S I G  GI  SSPTL+SAISNLTPAFTFTLAV+FR
Sbjct:    75 KRL-PSAKTPVFFNIFLLALVGFMSLIVGCKGIEYSSPTLASAISNLTPAFTFTLAVIFR 133

Query:   126 MEKLALRTLSTQAKIIGTMVSISGALVVVLYKGPTIFLGTSPSSTHSTNSLHWLMGSPSV 185
             ME++ LR+ +TQAKIIGT+VSISGALVV+LYKGP +    S +    T SL+  + S   
Sbjct:   134 MEQIVLRSSATQAKIIGTIVSISGALVVILYKGPKVLTDASLTPPSPTISLYQHLTSFD- 192

Query:   186 SNWVTGGFLLAAQCFLLSIWSIL 208
             S+W+ GG LLA Q  L+S+W IL
Sbjct:   193 SSWIIGGLLLATQYLLVSVWYIL 215

GO:0003674 "molecular_function" evidence=ND

GO:0016020 "membrane" evidence=IEA;ISS

TAIR|locus:2130344 UMAMIT38 "AT4G15540" [Arabidopsis thaliana (taxid:3702)]

 Score = 413 (150.4 bits), Expect = 1.3e-38, P = 1.3e-38
 Identities = 94/208 (45%), Positives = 126/208 (60%)

Query:     5 KFF-REALLLSATVAVECTTVGLNTLFKAAASKGLSYYVFVAYSYXXXXXXXXXXXXIFR 63
             K+F R+ +  +A +A+ECTTVG + L+KAA  +G S+YVFV Y+Y            IF 
Sbjct:     9 KYFKRDVVPFTAMIAIECTTVGSSILYKAATLRGFSFYVFVFYAYVGATLVLLLLSLIFG 68

Query:    64 NTTTVVPXXXXXXXXXXXXXXXXGVLSQIFGYTGIACSSPTLSSAISNLTPAFTFTLAVL 123
              + ++ P                G+ S++ G  GI  SSPTLSSAISNLTPAFTF LA+ 
Sbjct:    69 RSRSL-PTAKSSLFFKIFLLALLGLTSRVAGCKGIEYSSPTLSSAISNLTPAFTFILAIF 127

Query:   124 FRMEKLALRTLSTQAKIIGTMVSISGALVVVLYKGPTIFLGTSPSSTHSTNSLHWLMGSP 183
             FRME++ LR+ +TQAKIIGT+VSISGALV+VLYKGP + +  S +S  S+          
Sbjct:   128 FRMEQVMLRSSATQAKIIGTIVSISGALVIVLYKGPKLLVAASFTSFESS---------- 177

Query:   184 SVSNWVTGGFLLAAQCFLLSIWSILLSY 211
                 W+ GG LL  Q  LLS+W IL ++
Sbjct:   178 ----WIIGGLLLGLQFLLLSVWFILQTH 201

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

GO:0016020 "membrane" evidence=IEA

TAIR|locus:2091363 UMAMIT41 "AT3G28050" [Arabidopsis thaliana (taxid:3702)]

 Score = 397 (144.8 bits), Expect = 6.3e-37, P = 6.3e-37
 Identities = 93/209 (44%), Positives = 121/209 (57%)

Query:     1 MERRKFFREALLLSATVAVECTTVGLNTLFKAAASKGLSYYVFVAYSYXXXXXXXXXXXX 60
             M R+ F RE L ++A V +EC  VGLNTLFKAA  KG+S++VF+ YSY            
Sbjct:     1 MARKYFQREVLPVTALVIMECANVGLNTLFKAATLKGMSFHVFIVYSYGLAALLLLPSLF 60

Query:    61 I-FRNTTTVVPXXXXXXXXXXXXXXXXGVLSQIFGYTGIACSSPTLSSAISNLTPAFTFT 119
               FR+ T  +P                G  S I GYTGI  SSPTL+SAISNLTPAFTF 
Sbjct:    61 CSFRSRT--LPPMNFSILYKIVLLGIIGCCSNIMGYTGINYSSPTLASAISNLTPAFTFL 118

Query:   120 LAVLFRMEKLALRTLSTQAKIIGTMVSISGALVVVLYKGPTIFLGTSPSSTHSTNSLHWL 179
             LAV+FRME ++ +  S+ AK++GT+VSI GA +V LY GP + +  SP S     SL   
Sbjct:   119 LAVVFRMESVSFKRTSSVAKMLGTVVSIGGAFIVTLYNGPVV-IAKSPPSV----SLRSQ 173

Query:   180 MGSPSVSNWVTGGFLLAAQCFLLSIWSIL 208
               +P   NW+ G   LA + F + +W I+
Sbjct:   174 STNP---NWILGAGFLAVEYFCVPLWYIV 199

GO:0008150 "biological_process" evidence=ND

GO:0016020 "membrane" evidence=IEA;ISS

TAIR|locus:2091383 UMAMIT46 "AT3G28070" [Arabidopsis thaliana (taxid:3702)]

 Score = 367 (134.2 bits), Expect = 9.5e-34, P = 9.5e-34
 Identities = 84/204 (41%), Positives = 120/204 (58%)

Query:     8 REALLLSATVAVECTTVGLNTLFKAAASKGLSYYVFVAYSYXXXXXXXXXXXXIFRNTTT 67
             REA+ L+A + VE + VG++TLFK A SKGL+ Y F+ YSY             F N ++
Sbjct:    13 REAVFLTAMLVVETSVVGISTLFKFATSKGLNIYPFLGYSYLLASLLLLPSL-FFTNRSS 71

Query:    68 VVPXXXXXXXXXXXXXXXXGVLSQIFGYTGIACSSPTLSSAISNLTPAFTFTLAVLFRME 127
              +P                G +  I GY GI  SSPTL+SAI+N+TPA TF LA++FRME
Sbjct:    72 SLPPLSVSILSKIGLLGFLGSMYVITGYIGIEYSSPTLASAINNITPALTFILAIIFRME 131

Query:   128 KLALRTLSTQAKIIGTMVSISGALVVVLYKGPTIFLGTSPSSTHSTNSLHWLMGSPSVSN 187
             K++ +  S+ AK++GT++S+ GALVV+ Y GP +FL +SP   +       L  S S S+
Sbjct:   132 KVSFKERSSLAKLMGTILSLIGALVVIFYHGPRVFLASSPPYVNFRQFSPPL--SSSNSD 189

Query:   188 WVTGGFLLAAQCFLLSIWSILLSY 211
             W+ GG LL  Q   +S+  IL ++
Sbjct:   190 WLIGGALLTMQGIFVSVSFILQAH 213

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

GO:0009507 "chloroplast" evidence=ISM

GO:0016020 "membrane" evidence=IEA;ISS

TAIR|locus:2091338 UMAMIT45 "AT3G28100" [Arabidopsis thaliana (taxid:3702)]

 Score = 361 (132.1 bits), Expect = 4.1e-33, P = 4.1e-33
 Identities = 84/201 (41%), Positives = 117/201 (58%)

Query:     8 REALLLSATVAVECTTVGLNTLFKAAASKGLSYYVFVAYSYXXXXXXXXXXXXIFRNTTT 67
             REA+ L+A +A E   VG++TLFK A SKGL+ Y F+ YSY             F + + 
Sbjct:    10 REAVFLTAMLATETGVVGISTLFKVATSKGLNLYAFLGYSYLLASLLLLPSL-FFTDRSR 68

Query:    68 VVPXXXXXXXXXXXXXXXXGVLSQIFGYTGIACSSPTLSSAISNLTPAFTFTLAVLFRME 127
              +P                G +  I GY GI  SSPTL+SAISN+TPA TF LA++FRME
Sbjct:    69 SLPPLSLSILSKIGLLGLLGSMYVITGYIGIEYSSPTLASAISNITPALTFILAIIFRME 128

Query:   128 KLALRTLSTQAKIIGTMVSISGALVVVLYKGPTIFLGTSPSSTHSTNSLHWLMGSPSVSN 187
             K++ +  S+ AK++GT++S+ GALVVVLY GP +F+ +SP   +       L  S S S+
Sbjct:   129 KVSFKERSSVAKVMGTILSLIGALVVVLYHGPRVFVASSPPYINFRQLSPPL--SSSNSD 186

Query:   188 WVTGGFLLAAQCFLLSIWSIL 208
             W+ GG LL  +   +S+  IL
Sbjct:   187 WLIGGALLTIRDIFVSVSFIL 207

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

GO:0016020 "membrane" evidence=IEA

TAIR|locus:2091368 UMAMIT44 "AT3G28130" [Arabidopsis thaliana (taxid:3702)]

 Score = 354 (129.7 bits), Expect = 2.3e-32, P = 2.3e-32
 Identities = 86/204 (42%), Positives = 117/204 (57%)

Query:     8 REALLLSATVAVECTTVGLNTLFKAAASKGLSYYVFVAYSYXXXXXXXXXXXXIFRNTTT 67
             R+A+LL+A +A E   V +NTLFKAA SKGL+ Y F+ YSY            IF   + 
Sbjct:     9 RDAVLLTAMLATETGNVAMNTLFKAATSKGLNSYTFLIYSYLIGSIVLLPSH-IFSYRSR 67

Query:    68 VVPXXXXXXXXXXXXXXXXGVLSQIFGYTGIACSSPTLSSAISNLTPAFTFTLAVLFRME 127
              +P                G    I G+ GI  S+PTL+SAISN+ PA TF LA++FRME
Sbjct:    68 SLPSLSLSILCKIGVLGLLGSTYLITGFIGIEYSNPTLASAISNINPAITFILAIIFRME 127

Query:   128 KLALRTLSTQAKIIGTMVSISGALVVVLYKGPTIFLGTSPSSTHSTNSLHWLMGSPSVSN 187
             K + +  S+ AK++GT+VS+ GALVVVLY GP +F  +SP        L  L  S S S+
Sbjct:   128 KASFKEKSSVAKMVGTIVSLVGALVVVLYHGPRVFTPSSPPFPQLRQLL--LPLSSSNSD 185

Query:   188 WVTGGFLLAAQCFLLSIWSILLSY 211
             W+ GG LLA +  L+ +  IL ++
Sbjct:   186 WIIGGCLLAIKDTLVPVAFILQAH 209

GO:0008150 "biological_process" evidence=ND

GO:0009507 "chloroplast" evidence=ISM

GO:0016020 "membrane" evidence=IEA

TAIR|locus:2173737 UMAMIT42 "Usually multiple acids move in and out Transporters 42" [Arabidopsis thaliana (taxid:3702)]

 Score = 299 (110.3 bits), Expect = 3.8e-31, Sum P(2) = 3.8e-31
 Identities = 73/174 (41%), Positives = 97/174 (55%)

Query:     8 REALLLSATVAVECTTVGLNTLFKAAASKGLSYYVFVAYSYXXXXXXXXXXXXIFRNTTT 67
             R+  +L+A V  E + VG+NTL KAA SKGLS +V + YSY                + +
Sbjct:     9 RDGWILTAMVVTEFSNVGVNTLVKAATSKGLSPFVVLVYSYTFGSLLLLPLTFFSFRSRS 68

Query:    68 VVPXXXXXXXXXXXXXXXXGVLSQIFGYTGIACSSPTLSSAISNLTPAFTFTLAVLFRME 127
             + P                    QI GY GI  SSPTLSSA+SN+ PAFTF LAV+FRME
Sbjct:    69 LPPLTFSILCNMGILGLIASAF-QILGYNGIKYSSPTLSSAMSNVNPAFTFILAVVFRME 127

Query:   128 KLALRTLSTQAKIIGTMVSISGALVVVLYKGPTIFLGTSPSSTHSTNSLHWLMG 181
              ++L   S+ AK++GT++SI GALVV LY GP +       S+HS     W++G
Sbjct:   128 NISLGKKSSVAKVLGTILSIIGALVVTLYHGPMLM------SSHSD----WIIG 171

GO:0016020 "membrane" evidence=IEA

GO:0006863 "purine nucleobase transport" evidence=RCA

TAIR|locus:2091393 UMAMIT47 "AT3G28080" [Arabidopsis thaliana (taxid:3702)]

 Score = 341 (125.1 bits), Expect = 5.4e-31, P = 5.4e-31
 Identities = 80/204 (39%), Positives = 116/204 (56%)

Query:     8 REALLLSATVAVECTTVGLNTLFKAAASKGLSYYVFVAYSYXXXXXXXXXXXXIFRNTTT 67
             REA+ L+A +A E + VGL+TLFK A SKGL+ Y F++YSY             F N + 
Sbjct:    10 REAVFLTAMLAGETSIVGLSTLFKVATSKGLNIYPFLSYSYLLASLLLLPSL-FFTNRSR 68

Query:    68 VVPXXXXXXXXXXXXXXXXGVLSQIFGYTGIACSSPTLSSAISNLTPAFTFTLAVLFRME 127
              +P                G +  I G  GI  S+PTL+SAI N+ PA TF LAV+FRME
Sbjct:    69 SLPPLSASILSKIGLLGFLGSMYVITGGIGIEYSNPTLASAIGNIVPALTFILAVIFRME 128

Query:   128 KLALRTLSTQAKIIGTMVSISGALVVVLYKGPTIFLGTSPSSTHSTNSLHWLMGSPSVSN 187
             K++ +  S+ AK++GT++S+ GA VV+ Y GP +F+ +SP   +       L  S S S+
Sbjct:   129 KVSFKERSSVAKVMGTILSLIGAFVVIFYHGPRVFVASSPPYLNFRQLSPPL--SSSKSD 186

Query:   188 WVTGGFLLAAQCFLLSIWSILLSY 211
             W+ GG +L  Q   +S+  IL ++
Sbjct:   187 WLIGGAILTIQGIFVSVSFILQTH 210

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

GO:0009507 "chloroplast" evidence=ISM

GO:0016020 "membrane" evidence=IEA

GO:0019761 "glucosinolate biosynthetic process" evidence=RCA

TAIR|locus:2169414 UMAMIT9 "Usually multiple acids move in and out Transporters 9" [Arabidopsis thaliana (taxid:3702)]

 Score = 238 (88.8 bits), Expect = 1.1e-19, P = 1.1e-19
 Identities = 54/150 (36%), Positives = 80/150 (53%)

Query:    15 ATVAVECTTVGLNTLFKAAASKGLSYYVFVAYSYXXXXXXXXXXXXIFRNTTTVVPXXXX 74
             A ++++    G+N + K + + G+S+YV V Y +             F       P    
Sbjct:    21 AMISLQFGYAGMNIITKISLNTGMSHYVLVVYRHAIATAVIAPFAFFFERKAQ--PKITF 78

Query:    75 XXXXXXXXXXXXG-VLSQIFGYTGIACSSPTLSSAISNLTPAFTFTLAVLFRMEKLALRT 133
                         G V+ Q F Y G+  +SPT S A+SN+ PA TF LAVLFRME L L+ 
Sbjct:    79 SIFMQLFILGLLGPVIDQNFYYMGLKYTSPTFSCAMSNMLPAMTFILAVLFRMEMLDLKK 138

Query:   134 LSTQAKIIGTMVSISGALVVVLYKGPTIFL 163
             L  QAKI GT+V+++GA+++ +YKGP + L
Sbjct:   139 LWCQAKIAGTVVTVAGAMLMTIYKGPIVEL 168

GO:0009507 "chloroplast" evidence=ISM

GO:0016020 "membrane" evidence=IEA;ISS

TAIR|locus:2173189 UMAMIT15 "Usually multiple acids move in and out Transporters 15" [Arabidopsis thaliana (taxid:3702)]

 Score = 222 (83.2 bits), Expect = 5.0e-18, P = 5.0e-18
 Identities = 60/203 (29%), Positives = 95/203 (46%)

Query:     7 FREALLLSATVAVECTTVGLNTLFKAAASKGLSYYVFVAYSYXXXXXXXXXXXXIF-RNT 65
             F  A    A V ++C    ++ + K A +KG+S +V VAY              I  RNT
Sbjct:     3 FERARPFIAIVFIQCLYALMSIVAKLALNKGMSPHVLVAYRMAVASALITPFALILERNT 62

Query:    66 TTVVPXXXXXXXXXXXXXXXXGVLSQIFGYTGIACSSPTLSSAISNLTPAFTFTLAVLFR 125
                +                  V+ Q   Y+G+  ++ T +SA+ N  PA TF +A +F+
Sbjct:    63 RPKL--TFKILLQIAILSLFEPVVEQNLYYSGMKLTTATFTSALCNALPAMTFIMACVFK 120

Query:   126 MEKLALRTLSTQAKIIGTMVSISGALVVVLYKGPTIFLGTSPSSTHSTNSLHWLMGSPSV 185
             +EK+ +    +QAK++GTMV+I GA+++   KG  I L  + +S       H  M  P  
Sbjct:   121 LEKVTIERRHSQAKLVGTMVAIGGAMLMTFVKGNVIELPWTSNSRGLNGHTH-AMRIPKQ 179

Query:   186 SNWVTGGFLLAAQCFLLSIWSIL 208
             ++   G  +L A CF  S + IL
Sbjct:   180 ADIARGSIMLVASCFSWSCYIIL 202

GO:0016020 "membrane" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	211
PLN00411	358	PLN00411, PLN00411, nodulin MtN21 family protein;	2e-47

>gnl|CDD|177805 PLN00411, PLN00411, nodulin MtN21 family protein; Provisional

 Score =  158 bits (402), Expect = 2e-47
 Identities = 98/201 (48%), Positives = 135/201 (67%), Gaps = 3/201 (1%)

Query: 8   REALLLSATVAVECTTVGLNTLFKAAASKGLSYYVFVAYSYPLATLALLPLPLIFRNTTT 67
           REA+ L+A +A E + VG++TLFK A SKGL+ Y F+ YSY LA+L LLP  L F N + 
Sbjct: 10  REAVFLTAMLATETSVVGISTLFKVATSKGLNIYPFLGYSYLLASLLLLP-SLFFTNRSR 68

Query: 68  VVPSFKFSILSRIILLSFIGVLSQIFGYTGIACSSPTLSSAISNLTPAFTFTLAVLFRME 127
            +P    SILS+I LL F+G +  I GY GI  S+PTL+SAISN+TPA TF LA++FRME
Sbjct: 69  SLPPLSVSILSKIGLLGFLGSMYVITGYIGIEYSNPTLASAISNITPALTFILAIIFRME 128

Query: 128 KLALRTLSTQAKIIGTMVSISGALVVVLYKGPTIFLGTSPSSTHSTNSLHWLMGSPSVSN 187
           K++ +  S+ AK++GT++S+ GALVV+ Y GP +F+ +SP   +       L  S S S+
Sbjct: 129 KVSFKERSSVAKVMGTILSLIGALVVIFYHGPRVFVASSPPYLNFRQLSPPL--SSSNSD 186

Query: 188 WVTGGFLLAAQCFLLSIWSIL 208
           W+ GG LL  Q   +S+  IL
Sbjct: 187 WLIGGALLTIQGIFVSVSFIL 207

Length = 358

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	211
PLN00411	358	nodulin MtN21 family protein; Provisional	99.96
PRK11272	292	putative DMT superfamily transporter inner membran	99.88
PRK11689	295	aromatic amino acid exporter; Provisional	99.88
TIGR00688	256	rarD rarD protein. This uncharacterized protein is	99.87
PRK11453	299	O-acetylserine/cysteine export protein; Provisiona	99.86
PRK15430	296	putative chloramphenical resistance permease RarD;	99.85
TIGR00950	260	2A78 Carboxylate/Amino Acid/Amine Transporter.	99.83
PRK10532	293	threonine and homoserine efflux system; Provisiona	99.77
TIGR00817	302	tpt Tpt phosphate/phosphoenolpyruvate translocator	99.77
PTZ00343	350	triose or hexose phosphate/phosphate translocator;	99.71
TIGR03340	281	phn_DUF6 phosphonate utilization associated putati	99.7
PF00892	126	EamA: EamA-like transporter family; InterPro: IPR0	99.67
COG0697	292	RhaT Permeases of the drug/metabolite transporter	99.63
PF06027	334	DUF914: Eukaryotic protein of unknown function (DU	99.58
COG2510	140	Predicted membrane protein [Function unknown]	99.51
TIGR00950	260	2A78 Carboxylate/Amino Acid/Amine Transporter.	99.45
PF13536	113	EmrE: Multidrug resistance efflux transporter	99.37
TIGR00776	290	RhaT RhaT L-rhamnose-proton symporter family prote	99.35
PRK10532	293	threonine and homoserine efflux system; Provisiona	99.24
PRK11272	292	putative DMT superfamily transporter inner membran	99.22
PLN00411	358	nodulin MtN21 family protein; Provisional	99.11
PRK11689	295	aromatic amino acid exporter; Provisional	99.11
COG2962	293	RarD Predicted permeases [General function predict	99.06
TIGR00817	302	tpt Tpt phosphate/phosphoenolpyruvate translocator	99.03
PRK11453	299	O-acetylserine/cysteine export protein; Provisiona	99.02
COG5006	292	rhtA Threonine/homoserine efflux transporter [Amin	99.01
TIGR03340	281	phn_DUF6 phosphonate utilization associated putati	98.92
KOG2765	416	consensus Predicted membrane protein [Function unk	98.91
PF03151	153	TPT: Triose-phosphate Transporter family; InterPro	98.87
KOG4510	346	consensus Permease of the drug/metabolite transpor	98.87
PTZ00343	350	triose or hexose phosphate/phosphate translocator;	98.83
PF08449	303	UAA: UAA transporter family; InterPro: IPR013657 T	98.78
COG0697	292	RhaT Permeases of the drug/metabolite transporter	98.7
PRK15430	296	putative chloramphenical resistance permease RarD;	98.69
TIGR00776	290	RhaT RhaT L-rhamnose-proton symporter family prote	98.58
PRK15051	111	4-amino-4-deoxy-L-arabinose-phosphoundecaprenol fl	98.41
PRK02971	129	4-amino-4-deoxy-L-arabinose-phosphoundecaprenol fl	98.36
COG5006	292	rhtA Threonine/homoserine efflux transporter [Amin	98.28
PF04142	244	Nuc_sug_transp: Nucleotide-sugar transporter; Inte	98.11
KOG2234	345	consensus Predicted UDP-galactose transporter [Car	97.93
KOG2766	336	consensus Predicted membrane protein [Function unk	97.89
PF06027	334	DUF914: Eukaryotic protein of unknown function (DU	97.72
KOG1441	316	consensus Glucose-6-phosphate/phosphate and phosph	97.63
PF08449	303	UAA: UAA transporter family; InterPro: IPR013657 T	97.62
TIGR00688	256	rarD rarD protein. This uncharacterized protein is	97.61
KOG4314	290	consensus Predicted carbohydrate/phosphate translo	97.49
KOG3912	372	consensus Predicted integral membrane protein [Gen	97.26
KOG1441	316	consensus Glucose-6-phosphate/phosphate and phosph	97.2
PF06800	269	Sugar_transport: Sugar transport protein; InterPro	97.13
PRK13499	345	rhamnose-proton symporter; Provisional	97.03
PF06800	269	Sugar_transport: Sugar transport protein; InterPro	97.0
PRK10650	109	multidrug efflux system protein MdtI; Provisional	96.8
PRK10452	120	multidrug efflux system protein MdtJ; Provisional	96.77
COG2076	106	EmrE Membrane transporters of cations and cationic	96.73
KOG1444	314	consensus Nucleotide-sugar transporter VRG4/SQV-7	96.67
PRK09541	110	emrE multidrug efflux protein; Reviewed	96.65
COG2962	293	RarD Predicted permeases [General function predict	96.59
KOG4510	346	consensus Permease of the drug/metabolite transpor	96.59
PF05653	300	Mg_trans_NIPA: Magnesium transporter NIPA; InterPr	96.47
PF10639	113	UPF0546: Uncharacterised protein family UPF0546; I	96.43
PRK11431	105	multidrug efflux system protein; Provisional	96.43
PRK13499	345	rhamnose-proton symporter; Provisional	96.36
PF04657	138	DUF606: Protein of unknown function, DUF606; Inter	96.17
PF00893	93	Multi_Drug_Res: Small Multidrug Resistance protein	95.88
KOG1443	349	consensus Predicted integral membrane protein [Fun	94.91
TIGR00803	222	nst UDP-galactose transporter. NSTs generally appe	94.13
KOG1444	314	consensus Nucleotide-sugar transporter VRG4/SQV-7	93.81
KOG2765	416	consensus Predicted membrane protein [Function unk	93.76
KOG1580	337	consensus UDP-galactose transporter related protei	92.46
KOG2922	335	consensus Uncharacterized conserved protein [Funct	92.37
KOG1580	337	consensus UDP-galactose transporter related protei	90.36
COG4975	288	GlcU Putative glucose uptake permease [Carbohydrat	88.68
COG3238	150	Uncharacterized protein conserved in bacteria [Fun	87.31
KOG1581	327	consensus UDP-galactose transporter related protei	86.2
KOG3912	372	consensus Predicted integral membrane protein [Gen	84.96
KOG1581	327	consensus UDP-galactose transporter related protei	84.13
COG4975	288	GlcU Putative glucose uptake permease [Carbohydrat	81.2
KOG1443	349	consensus Predicted integral membrane protein [Fun	81.08

>PLN00411 nodulin MtN21 family protein; Provisional

Probab=99.96  E-value=1.3e-28  Score=216.42  Aligned_cols=201  Identities=47%  Similarity=0.735  Sum_probs=157.1

Q ss_pred             hhHhHHHHHHHHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHhhccccccCCCCHHHHHHHHHHHH
Q 028230            6 FFREALLLSATVAVECTTVGLNTLFKAAASKGLSYYVFVAYSYPLATLALLPLPLIFRNTTTVVPSFKFSILSRIILLSF   85 (211)
Q Consensus         6 ~~~~~~~~~~l~~~~~~wg~~~i~~K~~~~~~~~p~~l~~~R~~~A~l~l~~~~~~~~~~~~~~~~~~~~~~~~l~~lg~   85 (211)
                      |.++.++|+.++.+++.+++..++.|.+++.|++|+.+.++|+.+|+++++|+.+.+ +|++++++.+++++..+.++|+
T Consensus         8 ~~~~~~~~~~~~~~q~~~~~~~~~~k~a~~~G~~~~~~~~~R~~iA~l~Ll~~~~~~-~~~~~~~~~~~~~~~~l~l~g~   86 (358)
T PLN00411          8 WRREAVFLTAMLATETSVVGISTLFKVATSKGLNIYPFLGYSYLLASLLLLPSLFFT-NRSRSLPPLSVSILSKIGLLGF   86 (358)
T ss_pred             hhhccchHHHHHHHHHHHHHHHHHHHHHHHCCCCccHHHHHHHHHHHHHHHHHHHHH-HHhcccCcchHHHHHHHHHHHH
Confidence            566789999999999999999999999999999999999999999999999998765 4422224445788899999999


Q ss_pred             HHHHHHHHHHHhhhccchhHHHHhhhhhhHHHHHHHHHhhhhhhcccccccccceehHHHHhhhHHHHhhhcCCcccCCC
Q 028230           86 IGVLSQIFGYTGIACSSPTLSSAISNLTPAFTFTLAVLFRMEKLALRTLSTQAKIIGTMVSISGALVVVLYKGPTIFLGT  165 (211)
Q Consensus        86 ~g~~~~~l~~~gl~~tsa~~as~i~~~~Pv~~~lla~l~~~E~~~~~~~~~~~~~~Gi~l~~~Gv~li~~~~g~~~~~~~  165 (211)
                      +|+.++.+++.|++||||++|+++.+++|+++++++++++.|+++.+++.++.|++|++++++|+.++..++++.....+
T Consensus        87 ~g~~~~~~~~~gl~~tsa~~asll~~~~P~~~~lla~~~~~e~~~~~er~~~~~~~G~~l~~~Gv~ll~~~~g~~~~~~~  166 (358)
T PLN00411         87 LGSMYVITGYIGIEYSNPTLASAISNITPALTFILAIIFRMEKVSFKERSSVAKVMGTILSLIGALVVIFYHGPRVFVAS  166 (358)
T ss_pred             HHHHHHHHHHHHHhhccHHHHHHHHHhhHHHHHHHHHHHHhchhhhcccccHHHHHHHHHHHHHHHHHHHccCccccccc
Confidence            98667889999999999999999999999999999999965555555555667899999999999998866553211000


Q ss_pred             C--CCCCCccCccccccCCCCCCchHHHHHHHHHHHHHHHHHHHHcCC
Q 028230          166 S--PSSTHSTNSLHWLMGSPSVSNWVTGGFLLAAQCFLLSIWSILLSY  211 (211)
Q Consensus       166 ~--~~~~~~~~~~~~~~~~~~~~~~~~G~ll~l~a~~~~a~y~vlq~~  211 (211)
                      +  ..+.+. +.+.   ......++..|++++++|++|||+|+++||+
T Consensus       167 ~~~~~~~~~-~~~~---~~~~~~~~~lG~~l~l~aa~~wa~~~il~~~  210 (358)
T PLN00411        167 SPPYLNFRQ-LSPP---LSSSNSDWLIGGALLTIQGIFVSVSFILQAH  210 (358)
T ss_pred             ccccccccc-cccc---cCCCcccHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            0  000000 0000   0112335678999999999999999999974

>PRK11272 putative DMT superfamily transporter inner membrane protein; Provisional

Probab=99.88  E-value=2.3e-21  Score=166.06  Aligned_cols=161  Identities=12%  Similarity=0.104  Sum_probs=134.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHhhccccccCCCCHHHHHHHHHHHHHH-HHH
Q 028230           12 LLSATVAVECTTVGLNTLFKAAASKGLSYYVFVAYSYPLATLALLPLPLIFRNTTTVVPSFKFSILSRIILLSFIG-VLS   90 (211)
Q Consensus        12 ~~~~l~~~~~~wg~~~i~~K~~~~~~~~p~~l~~~R~~~A~l~l~~~~~~~~~~~~~~~~~~~~~~~~l~~lg~~g-~~~   90 (211)
                      -...++...++||.+++++|...+ ++||.+++++|+.+++++++++...+  |++.   .+++++.+...+|.++ ..+
T Consensus         9 ~~~~~~~~~~iWg~~~~~~K~~~~-~~~p~~~~~~R~~~a~l~ll~~~~~~--~~~~---~~~~~~~~~~~~g~~~~~~~   82 (292)
T PRK11272          9 LFGALFALYIIWGSTYLVIRIGVE-SWPPLMMAGVRFLIAGILLLAFLLLR--GHPL---PTLRQWLNAALIGLLLLAVG   82 (292)
T ss_pred             HHHHHHHHHHHHhhHHHHHHHHhc-cCCHHHHHHHHHHHHHHHHHHHHHHh--CCCC---CcHHHHHHHHHHHHHHHHHH
Confidence            456677889999999999999887 69999999999999999998887553  2222   2467888889999998 888


Q ss_pred             HHHHHHhh-hccchhHHHHhhhhhhHHHHHHHHHhhhhhhcccccccccceehHHHHhhhHHHHhhhcCCcccCCCCCCC
Q 028230           91 QIFGYTGI-ACSSPTLSSAISNLTPAFTFTLAVLFRMEKLALRTLSTQAKIIGTMVSISGALVVVLYKGPTIFLGTSPSS  169 (211)
Q Consensus        91 ~~l~~~gl-~~tsa~~as~i~~~~Pv~~~lla~l~~~E~~~~~~~~~~~~~~Gi~l~~~Gv~li~~~~g~~~~~~~~~~~  169 (211)
                      +.+++.+. +++++++++++.++.|+++.+++.+ +|||++++      +++|++++++|+.++... +           
T Consensus        83 ~~~~~~~~~~~~~a~~a~~l~~~~Pl~~~lla~~-~~e~~~~~------~~~~~~la~~Gv~ll~~~-~-----------  143 (292)
T PRK11272         83 NGMVTVAEHQNVPSGIAAVVVATVPLFTLCFSRL-FGIRTRKL------EWLGIAIGLAGIVLLNSG-G-----------  143 (292)
T ss_pred             HHHHHHHHHccCcHHHHHHHHHHHHHHHHHHHHH-hcccCchh------HHHHHHHHHHhHHHHhcC-c-----------
Confidence            99999999 9999999999999999999999986 69999875      589999999999887521 1           


Q ss_pred             CCccCccccccCCCCCCchHHHHHHHHHHHHHHHHHHHHcCC
Q 028230          170 THSTNSLHWLMGSPSVSNWVTGGFLLAAQCFLLSIWSILLSY  211 (211)
Q Consensus       170 ~~~~~~~~~~~~~~~~~~~~~G~ll~l~a~~~~a~y~vlq~~  211 (211)
                                  . .+. ...|+++.++++++||.|++.+||
T Consensus       144 ------------~-~~~-~~~G~l~~l~a~~~~a~~~~~~~~  171 (292)
T PRK11272        144 ------------N-LSG-NPWGAILILIASASWAFGSVWSSR  171 (292)
T ss_pred             ------------c-ccc-chHHHHHHHHHHHHHHHHHHHHHh
Confidence                        0 111 246999999999999999999875

>PRK11689 aromatic amino acid exporter; Provisional

Probab=99.88  E-value=1.2e-21  Score=168.18  Aligned_cols=171  Identities=15%  Similarity=0.056  Sum_probs=129.6

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHhhccccccCCCCHHHHHHHHHHHHHH-
Q 028230            9 EALLLSATVAVECTTVGLNTLFKAAASKGLSYYVFVAYSYPLATLALLPLPLIFRNTTTVVPSFKFSILSRIILLSFIG-   87 (211)
Q Consensus         9 ~~~~~~~l~~~~~~wg~~~i~~K~~~~~~~~p~~l~~~R~~~A~l~l~~~~~~~~~~~~~~~~~~~~~~~~l~~lg~~g-   87 (211)
                      +.+++++++.+.++||++++.+|.++++ +||+.++++|+.+|+++++++.  .  ++    +.++++ ++....+.++ 
T Consensus         2 ~~~~~l~~l~a~~~Wg~~~~~~k~~~~~-~~P~~~~~~R~~~a~l~l~~~~--~--~~----~~~~~~-~~~~~~~~l~~   71 (295)
T PRK11689          2 SQKATLIGLIAILLWSTMVGLIRGVSES-LGPVGGAAMIYSVSGLLLLLTV--G--FP----RLRQFP-KRYLLAGGLLF   71 (295)
T ss_pred             CcchhHHHHHHHHHHHHHHHHHHHHHcc-CChHHHHHHHHHHHHHHHHHHc--c--cc----cccccc-HHHHHHHhHHH
Confidence            4567889999999999999999999874 9999999999999999988763  1  11    111112 2334556667 


Q ss_pred             HHHHHHHHHhhhc----cchhHHHHhhhhhhHHHHHHHHHhhhhhhcccccccccceehHHHHhhhHHHHhhhcCCcccC
Q 028230           88 VLSQIFGYTGIAC----SSPTLSSAISNLTPAFTFTLAVLFRMEKLALRTLSTQAKIIGTMVSISGALVVVLYKGPTIFL  163 (211)
Q Consensus        88 ~~~~~l~~~gl~~----tsa~~as~i~~~~Pv~~~lla~l~~~E~~~~~~~~~~~~~~Gi~l~~~Gv~li~~~~g~~~~~  163 (211)
                      +.++.+++.|++|    +++++++++.++.|+++.+++++++|||++++      +++|++++++|+.++...+ +.. .
T Consensus        72 ~~~~~~~~~a~~~~~~~~~a~~a~~l~~~~Pi~~~ll~~~~~~e~~~~~------~~~g~~l~~~Gv~li~~~~-~~~-~  143 (295)
T PRK11689         72 VSYEICLALSLGYANTRRQAIEVGMVNYLWPSLTILFAVLFNGQKANWL------LIPGLLLALAGVAWVLGGD-NGL-S  143 (295)
T ss_pred             HHHHHHHHHHHHHhhccccchHHHHHHHHhHHHHHHHHHHHhcCCccHH------HHHHHHHHHHhHhheecCC-ccc-h
Confidence            8888888888865    57889999999999999999999999999875      5899999999998886321 100 0


Q ss_pred             CCCCCCCCccCccccccCCCCCCchHHHHHHHHHHHHHHHHHHHHcCC
Q 028230          164 GTSPSSTHSTNSLHWLMGSPSVSNWVTGGFLLAAQCFLLSIWSILLSY  211 (211)
Q Consensus       164 ~~~~~~~~~~~~~~~~~~~~~~~~~~~G~ll~l~a~~~~a~y~vlq~~  211 (211)
                      ..         +.     ..+..+...|+++.++|++|||+|++++||
T Consensus       144 ~~---------~~-----~~~~~~~~~G~~~~l~aa~~~A~~~v~~k~  177 (295)
T PRK11689        144 LA---------EL-----INNIASNPLSYGLAFIGAFIWAAYCNVTRK  177 (295)
T ss_pred             hh---------hh-----hhccccChHHHHHHHHHHHHHHHHHHHHhh
Confidence            00         00     000112246999999999999999999886

>TIGR00688 rarD rarD protein

Probab=99.87  E-value=4.8e-21  Score=160.87  Aligned_cols=161  Identities=10%  Similarity=0.058  Sum_probs=127.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHhhcccc----ccCCCCHH-HHHHHHHHHH
Q 028230           11 LLLSATVAVECTTVGLNTLFKAAASKGLSYYVFVAYSYPLATLALLPLPLIFRNTTT----VVPSFKFS-ILSRIILLSF   85 (211)
Q Consensus        11 ~~~~~l~~~~~~wg~~~i~~K~~~~~~~~p~~l~~~R~~~A~l~l~~~~~~~~~~~~----~~~~~~~~-~~~~l~~lg~   85 (211)
                      |++.+++++.++||.++++.|. .+ ++||.++.++|++++++++.++...+ ++++    +.++.+++ ++..+...|+
T Consensus         2 ~g~~~~i~a~~~wg~~~~~~k~-~~-~~~~~~i~~~R~~~a~~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~g~   78 (256)
T TIGR00688         2 KGIIVSLLASFLFGYMYYYSKL-LK-PLPATDILGHRMIWSFPFMLLSVTLF-RQWAALIERLKRIQKRPLILSLLLCGL   78 (256)
T ss_pred             CcHHHHHHHHHHHHHHHHHHHH-hc-cCCHHHHHHHHHHHHHHHHHHHHHHH-cchHHHHHHHhCcccchHHHHHHHHHH
Confidence            4788999999999999999998 45 49999999999999998888776443 2211    10111223 3444566666


Q ss_pred             HHHHHHHHHHHhhhccchhHHHHhhhhhhHHHHHHHHHhhhhhhcccccccccceehHHHHhhhHHHHhhhcCCcccCCC
Q 028230           86 IGVLSQIFGYTGIACSSPTLSSAISNLTPAFTFTLAVLFRMEKLALRTLSTQAKIIGTMVSISGALVVVLYKGPTIFLGT  165 (211)
Q Consensus        86 ~g~~~~~l~~~gl~~tsa~~as~i~~~~Pv~~~lla~l~~~E~~~~~~~~~~~~~~Gi~l~~~Gv~li~~~~g~~~~~~~  165 (211)
                      +...++.+++++++++++++|+++.++.|+++++++++++|||++++      +++|++++++|+.++...++       
T Consensus        79 ~~~~~~~~~~~a~~~~~~~~a~~l~~~~Pi~~~lla~~~l~Ek~~~~------~~l~~~~~~~Gv~li~~~~~-------  145 (256)
T TIGR00688        79 LIGFNWWLFIWAVNNGSSLEVSLGYLINPLVMVALGRVFLKERISRF------QFIAVIIATLGVISNIVLKG-------  145 (256)
T ss_pred             HHHHHHHHHHHHHHcchHHHHHHHHHHHHHHHHHHHHHHHhcCCCHH------HHHHHHHHHHHHHHHHHHcC-------
Confidence            66889999999999999999999999999999999999999999876      58999999999988753211       


Q ss_pred             CCCCCCccCccccccCCCCCCchHHHHHHHHHHHHHHHHHHHHcCC
Q 028230          166 SPSSTHSTNSLHWLMGSPSVSNWVTGGFLLAAQCFLLSIWSILLSY  211 (211)
Q Consensus       166 ~~~~~~~~~~~~~~~~~~~~~~~~~G~ll~l~a~~~~a~y~vlq~~  211 (211)
                                         +.+     .+.+++++||+.|.+.+|+
T Consensus       146 -------------------~~~-----~~~l~aa~~~a~~~i~~~~  167 (256)
T TIGR00688       146 -------------------SLP-----WEALVLAFSFTAYGLIRKA  167 (256)
T ss_pred             -------------------Cch-----HHHHHHHHHHHHHHHHHhh
Confidence                               111     3567899999999999875

This uncharacterized protein is predicted to have many membrane-spanning domains.

>PRK11453 O-acetylserine/cysteine export protein; Provisional

Probab=99.86  E-value=1.4e-20  Score=161.78  Aligned_cols=157  Identities=14%  Similarity=0.101  Sum_probs=124.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHhhccccccCCCCHHHHHHHHHHHHHH-HHHH
Q 028230           13 LSATVAVECTTVGLNTLFKAAASKGLSYYVFVAYSYPLATLALLPLPLIFRNTTTVVPSFKFSILSRIILLSFIG-VLSQ   91 (211)
Q Consensus        13 ~~~l~~~~~~wg~~~i~~K~~~~~~~~p~~l~~~R~~~A~l~l~~~~~~~~~~~~~~~~~~~~~~~~l~~lg~~g-~~~~   91 (211)
                      .+..+++.++||.+++++|.+++ ++||.++.++|+.+++++++++.  + ++     +.+++   .+...|++. ..++
T Consensus         6 ~l~~l~~~~~Wg~~~~~~k~~~~-~~~p~~~~~~R~~~a~~~l~~~~--~-~~-----~~~~~---~~~~~g~~~~~~~~   73 (299)
T PRK11453          6 GVLALLVVVVWGLNFVVIKVGLH-NMPPLMLAGLRFMLVAFPAIFFV--A-RP-----KVPLN---LLLGYGLTISFGQF   73 (299)
T ss_pred             HHHHHHHHHHHhhhHHHHHHHHh-cCCHHHHHHHHHHHHHHHHHHHh--c-CC-----CCchH---HHHHHHHHHHHHHH
Confidence            45678899999999999999987 49999999999999887776653  2 11     11122   345567766 6677


Q ss_pred             HHHHHhhhc-cchhHHHHhhhhhhHHHHHHHHHhhhhhhcccccccccceehHHHHhhhHHHHhhhcCCcccCCCCCCCC
Q 028230           92 IFGYTGIAC-SSPTLSSAISNLTPAFTFTLAVLFRMEKLALRTLSTQAKIIGTMVSISGALVVVLYKGPTIFLGTSPSST  170 (211)
Q Consensus        92 ~l~~~gl~~-tsa~~as~i~~~~Pv~~~lla~l~~~E~~~~~~~~~~~~~~Gi~l~~~Gv~li~~~~g~~~~~~~~~~~~  170 (211)
                      .+++.+++| .++++++++.++.|+++.+++++++|||++++      +++|++++++|+.++.. ++.           
T Consensus        74 ~~~~~~~~~~~~a~~a~~l~~~~pi~~~ll~~~~l~e~~~~~------~~~~~~l~~~Gv~ll~~-~~~-----------  135 (299)
T PRK11453         74 AFLFCAINFGMPAGLASLVLQAQAFFTIVLGAFTFGERLQGK------QLAGIALAIFGVLVLIE-DSL-----------  135 (299)
T ss_pred             HHHHHHHHhcCCHHHHHHHHHhHHHHHHHHHHHHhcCcCcHH------HHHHHHHHHHhHHHhcc-ccC-----------
Confidence            788899998 58899999999999999999999999999875      58999999999988862 110           


Q ss_pred             CccCccccccCCCCCCchHHHHHHHHHHHHHHHHHHHHcCC
Q 028230          171 HSTNSLHWLMGSPSVSNWVTGGFLLAAQCFLLSIWSILLSY  211 (211)
Q Consensus       171 ~~~~~~~~~~~~~~~~~~~~G~ll~l~a~~~~a~y~vlq~~  211 (211)
                                 + ..+....||++.+.++++|++|+++|||
T Consensus       136 -----------~-~~~~~~~G~~l~l~aal~~a~~~v~~~~  164 (299)
T PRK11453        136 -----------N-GQHVAMLGFMLTLAAAFSWACGNIFNKK  164 (299)
T ss_pred             -----------C-CcchhHHHHHHHHHHHHHHHHHHHHHHH
Confidence                       0 1111246999999999999999999874

>PRK15430 putative chloramphenical resistance permease RarD; Provisional

Probab=99.85  E-value=1.6e-20  Score=161.26  Aligned_cols=163  Identities=10%  Similarity=0.013  Sum_probs=129.8

Q ss_pred             HhHHHHHHHHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHhhccccc-cCC-CCHHHHHHHHHHHH
Q 028230            8 REALLLSATVAVECTTVGLNTLFKAAASKGLSYYVFVAYSYPLATLALLPLPLIFRNTTTV-VPS-FKFSILSRIILLSF   85 (211)
Q Consensus         8 ~~~~~~~~l~~~~~~wg~~~i~~K~~~~~~~~p~~l~~~R~~~A~l~l~~~~~~~~~~~~~-~~~-~~~~~~~~l~~lg~   85 (211)
                      ++.++++.++++.++||.++++.|.. + ++||.++.++|+.++.+++.++...+ ++... .++ .+++++. ....+.
T Consensus         5 ~~~~g~~~~l~a~~~wg~~~~~~k~~-~-~~~~~~~~~~R~~~a~~~l~~~~~~~-~~~~~~~~~~~~~~~~~-~~~~~~   80 (296)
T PRK15430          5 QTRQGVLLALAAYFIWGIAPAYFKLI-Y-YVPADEILTHRVIWSFFFMVVLMSIC-RQWSYLKTLIQTPQKIF-MLAVSA   80 (296)
T ss_pred             hhhhHHHHHHHHHHHHHHHHHHHHHh-c-CCCHHHHHHHHHHHHHHHHHHHHHHH-ccHHHHHHHHcCHHHHH-HHHHHH
Confidence            55789999999999999999999975 4 59999999999999998888776543 22110 000 1234433 344677


Q ss_pred             HH-HHHHHHHHHhhhccchhHHHHhhhhhhHHHHHHHHHhhhhhhcccccccccceehHHHHhhhHHHHhhhcCCcccCC
Q 028230           86 IG-VLSQIFGYTGIACSSPTLSSAISNLTPAFTFTLAVLFRMEKLALRTLSTQAKIIGTMVSISGALVVVLYKGPTIFLG  164 (211)
Q Consensus        86 ~g-~~~~~l~~~gl~~tsa~~as~i~~~~Pv~~~lla~l~~~E~~~~~~~~~~~~~~Gi~l~~~Gv~li~~~~g~~~~~~  164 (211)
                      ++ +.++.++++|++++++++++++.++.|+++.+++++++|||++++      +++|++++++|+.++....+      
T Consensus        81 ~~~~~~~~~~~~a~~~~~~~~a~~l~~~~Pi~v~l~~~~~l~E~~~~~------~~~g~~l~~~Gv~li~~~~~------  148 (296)
T PRK15430         81 VLIGGNWLLFIWAVNNHHMLEASLGYFINPLVNIVLGMIFLGERFRRM------QWLAVILAICGVLVQLWTFG------  148 (296)
T ss_pred             HHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHhcCCCcHH------HHHHHHHHHHHHHHHHHHcC------
Confidence            77 899999999999999999999999999999999999999999876      58999999999998862111      


Q ss_pred             CCCCCCCccCccccccCCCCCCchHHHHHHHHHHHHHHHHHHHHcCC
Q 028230          165 TSPSSTHSTNSLHWLMGSPSVSNWVTGGFLLAAQCFLLSIWSILLSY  211 (211)
Q Consensus       165 ~~~~~~~~~~~~~~~~~~~~~~~~~~G~ll~l~a~~~~a~y~vlq~~  211 (211)
                                          +.     .++.++++++||.|++.+|+
T Consensus       149 --------------------~~-----~~~~l~aa~~~a~~~i~~r~  170 (296)
T PRK15430        149 --------------------SL-----PIIALGLAFSFAFYGLVRKK  170 (296)
T ss_pred             --------------------Cc-----cHHHHHHHHHHHHHHHHHHh
Confidence                                11     14577899999999999875

>TIGR00950 2A78 Carboxylate/Amino Acid/Amine Transporter

Probab=99.83  E-value=1.1e-19  Score=152.13  Aligned_cols=148  Identities=16%  Similarity=0.176  Sum_probs=126.6

Q ss_pred             HHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHhhccccccCCCCHHHHHHHHHHHHHH-HHHHHHHHHhhhcc
Q 028230           23 TVGLNTLFKAAASKGLSYYVFVAYSYPLATLALLPLPLIFRNTTTVVPSFKFSILSRIILLSFIG-VLSQIFGYTGIACS  101 (211)
Q Consensus        23 wg~~~i~~K~~~~~~~~p~~l~~~R~~~A~l~l~~~~~~~~~~~~~~~~~~~~~~~~l~~lg~~g-~~~~~l~~~gl~~t  101 (211)
                      ||.+++..|..+++..||....+.|+..+.+++.++...   +  .    +++++......|.++ .+++.+++.|++|+
T Consensus         1 Wg~~~~~~k~~~~~~~~~~~~~~~r~~~~~l~l~~~~~~---~--~----~~~~~~~~~~~~~~~~~l~~~~~~~a~~~~   71 (260)
T TIGR00950         1 WGTTGVVIGQYLEGQVPLYFAVFRRLIFALLLLLPLLRR---R--P----PLKRLLRLLLLGALQIGVFYVLYFVAVKRL   71 (260)
T ss_pred             CcchHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHh---c--c----CHhHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            899999999998877999999999999998888776422   2  1    345677888999999 99999999999999


Q ss_pred             chhHHHHhhhhhhHHHHHHHHHhhhhhhcccccccccceehHHHHhhhHHHHhhhcCCcccCCCCCCCCCccCccccccC
Q 028230          102 SPTLSSAISNLTPAFTFTLAVLFRMEKLALRTLSTQAKIIGTMVSISGALVVVLYKGPTIFLGTSPSSTHSTNSLHWLMG  181 (211)
Q Consensus       102 sa~~as~i~~~~Pv~~~lla~l~~~E~~~~~~~~~~~~~~Gi~l~~~Gv~li~~~~g~~~~~~~~~~~~~~~~~~~~~~~  181 (211)
                      ++++++++.++.|+++.+++.+++|||++++      +++|++++++|+.++.. +++                      
T Consensus        72 ~~~~~~ii~~~~P~~~~~~~~l~~~e~~~~~------~~~gi~i~~~Gv~li~~-~~~----------------------  122 (260)
T TIGR00950        72 PVGEAALLLYLAPLYVTLLSDLMGKERPRKL------VLLAAVLGLAGAVLLLS-DGN----------------------  122 (260)
T ss_pred             ChhhhHHHHhhhHHHHHHHHHHHccCCCcHH------HHHHHHHHHHhHHhhcc-CCc----------------------
Confidence            9999999999999999999999999999875      58999999999988752 110                      


Q ss_pred             CCCCCchHHHHHHHHHHHHHHHHHHHHcCC
Q 028230          182 SPSVSNWVTGGFLLAAQCFLLSIWSILLSY  211 (211)
Q Consensus       182 ~~~~~~~~~G~ll~l~a~~~~a~y~vlq~~  211 (211)
                         .++...|+++.+.++++|+.|.+.+||
T Consensus       123 ---~~~~~~G~~~~l~a~~~~a~~~~~~k~  149 (260)
T TIGR00950       123 ---LSINPAGLLLGLGSGISFALGTVLYKR  149 (260)
T ss_pred             ---ccccHHHHHHHHHHHHHHHHHHHHHhH
Confidence               112357999999999999999999885

>PRK10532 threonine and homoserine efflux system; Provisional

Probab=99.77  E-value=1.3e-17  Score=143.08  Aligned_cols=161  Identities=12%  Similarity=0.030  Sum_probs=127.6

Q ss_pred             HhHHHHHHHHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHhhccccccCCCCHHHHHHHHHHHHHH
Q 028230            8 REALLLSATVAVECTTVGLNTLFKAAASKGLSYYVFVAYSYPLATLALLPLPLIFRNTTTVVPSFKFSILSRIILLSFIG   87 (211)
Q Consensus         8 ~~~~~~~~l~~~~~~wg~~~i~~K~~~~~~~~p~~l~~~R~~~A~l~l~~~~~~~~~~~~~~~~~~~~~~~~l~~lg~~g   87 (211)
                      .+.+++..++++.++|+.+++++|.++++ +||.+++++|+.+|+++++++...+  +    .+.++++++..+..|++.
T Consensus         9 ~~~~~~~~~~la~~~~~~~~~~~K~~~~~-~~~~~~~~~R~~~a~l~l~~~~~~~--~----~~~~~~~~~~~~~~g~~~   81 (293)
T PRK10532          9 PVWLPILLLLIAMASIQSGASLAKSLFPL-VGAPGVTALRLALGTLILIAIFKPW--R----LRFAKEQRLPLLFYGVSL   81 (293)
T ss_pred             ccchHHHHHHHHHHHHHhhHHHHHHHHHH-cCHHHHHHHHHHHHHHHHHHHHhHH--h----ccCCHHHHHHHHHHHHHH
Confidence            35778999999999999999999999985 9999999999999999988775322  1    123567888888888866


Q ss_pred             HHHHHHHHHhhhccchhHHHHhhhhhhHHHHHHHHHhhhhhhcccccccccceehHHHHhhhHHHHhhhcCCcccCCCCC
Q 028230           88 VLSQIFGYTGIACSSPTLSSAISNLTPAFTFTLAVLFRMEKLALRTLSTQAKIIGTMVSISGALVVVLYKGPTIFLGTSP  167 (211)
Q Consensus        88 ~~~~~l~~~gl~~tsa~~as~i~~~~Pv~~~lla~l~~~E~~~~~~~~~~~~~~Gi~l~~~Gv~li~~~~g~~~~~~~~~  167 (211)
                      ...+.+++++++|++++.++++.++.|+++.+++.    |+..        +..++.++++|+.++.. .+.        
T Consensus        82 ~~~~~~~~~al~~~~~~~a~~l~~t~Pi~~~ll~~----~~~~--------~~~~~~i~~~Gv~li~~-~~~--------  140 (293)
T PRK10532         82 GGMNYLFYLSIQTVPLGIAVALEFTGPLAVALFSS----RRPV--------DFVWVVLAVLGLWFLLP-LGQ--------  140 (293)
T ss_pred             HHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHhc----CChH--------HHHHHHHHHHHHheeee-cCC--------
Confidence            66778899999999999999999999999988763    4432        34577889999987752 111        


Q ss_pred             CCCCccCccccccCCCCCCchHHHHHHHHHHHHHHHHHHHHcCC
Q 028230          168 SSTHSTNSLHWLMGSPSVSNWVTGGFLLAAQCFLLSIWSILLSY  211 (211)
Q Consensus       168 ~~~~~~~~~~~~~~~~~~~~~~~G~ll~l~a~~~~a~y~vlq~~  211 (211)
                                    +..+. ...|+++.++++++|++|+++.||
T Consensus       141 --------------~~~~~-~~~G~ll~l~aa~~~a~~~v~~r~  169 (293)
T PRK10532        141 --------------DVSHV-DLTGAALALGAGACWAIYILSGQR  169 (293)
T ss_pred             --------------CcccC-ChHHHHHHHHHHHHHHHHHHHHHH
Confidence                          00111 246999999999999999998664

>TIGR00817 tpt Tpt phosphate/phosphoenolpyruvate translocator

Probab=99.77  E-value=3.4e-17  Score=140.70  Aligned_cols=150  Identities=11%  Similarity=0.084  Sum_probs=121.6

Q ss_pred             HHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHhhccccccCCCCHHHHHHHHHHHHHHHHHHHHHHHhhhccchhH
Q 028230           26 LNTLFKAAASKGLSYYVFVAYSYPLATLALLPLPLIFRNTTTVVPSFKFSILSRIILLSFIGVLSQIFGYTGIACSSPTL  105 (211)
Q Consensus        26 ~~i~~K~~~~~~~~p~~l~~~R~~~A~l~l~~~~~~~~~~~~~~~~~~~~~~~~l~~lg~~g~~~~~l~~~gl~~tsa~~  105 (211)
                      ..+.-|.++++--+|..++++|+.++.+.+.+... . ..+++ ++.+++|+++++..|++++.++.+.+.+++|+|+++
T Consensus        17 ~~~~NK~~l~~~~~P~~~~~~~~~~~~~~~~~~~~-~-~~~~~-~~~~~~~~~~~~~~g~~~~~~~~~~~~~l~~~s~s~   93 (302)
T TIGR00817        17 FNIYNKKLLNVFPYPYFKTLISLAVGSLYCLLSWS-S-GLPKR-LKISSALLKLLLPVAIVHTIGHVTSNVSLSKVAVSF   93 (302)
T ss_pred             HHHHHHHHHhhCChhHHHHHHHHHHHHHHHHHHHH-h-CCCCC-CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHH
Confidence            33578999875477999999999999877665521 1 11222 456789999999999999777899999999999999


Q ss_pred             HHHhhhhhhHHHHHHHHHhhhhhhcccccccccceehHHHHhhhHHHHhhhcCCcccCCCCCCCCCccCccccccCCCCC
Q 028230          106 SSAISNLTPAFTFTLAVLFRMEKLALRTLSTQAKIIGTMVSISGALVVVLYKGPTIFLGTSPSSTHSTNSLHWLMGSPSV  185 (211)
Q Consensus       106 as~i~~~~Pv~~~lla~l~~~E~~~~~~~~~~~~~~Gi~l~~~Gv~li~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~  185 (211)
                      ++++.+++|+++.+++++++|||++++      ++.|++++++|+.+..  .++                        .+
T Consensus        94 ~~li~~~~Pv~~~ll~~~~~~e~~~~~------~~~~l~l~~~Gv~l~~--~~~------------------------~~  141 (302)
T TIGR00817        94 THTIKAMEPFFSVVLSAFFLGQEFPST------LWLSLLPIVGGVALAS--DTE------------------------LS  141 (302)
T ss_pred             HHHHHhcchHHHHHHHHHHhCCCCcHH------HHHHHHHHHHHHhhhc--CCc------------------------cc
Confidence            999999999999999999999999865      5899999999997643  110                        11


Q ss_pred             CchHHHHHHHHHHHHHHHHHHHHcCC
Q 028230          186 SNWVTGGFLLAAQCFLLSIWSILLSY  211 (211)
Q Consensus       186 ~~~~~G~ll~l~a~~~~a~y~vlq~~  211 (211)
                      .+ ..|+++.++|+++|++|++.+||
T Consensus       142 ~~-~~G~~~~l~a~~~~a~~~v~~k~  166 (302)
T TIGR00817       142 FN-WAGFLSAMISNITFVSRNIFSKK  166 (302)
T ss_pred             cc-HHHHHHHHHHHHHHHHHHHHHHH
Confidence            22 46999999999999999998764

specificities overlap.

>PTZ00343 triose or hexose phosphate/phosphate translocator; Provisional

Probab=99.71  E-value=8.2e-16  Score=135.17  Aligned_cols=164  Identities=13%  Similarity=0.044  Sum_probs=124.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhCCCC-hHHHHHHHHHHHHHHHHHHHHHhhccccccCCC--CHHHHHHHHHHHHH
Q 028230           10 ALLLSATVAVECTTVGLNTLFKAAASKGLS-YYVFVAYSYPLATLALLPLPLIFRNTTTVVPSF--KFSILSRIILLSFI   86 (211)
Q Consensus        10 ~~~~~~l~~~~~~wg~~~i~~K~~~~~~~~-p~~l~~~R~~~A~l~l~~~~~~~~~~~~~~~~~--~~~~~~~l~~lg~~   86 (211)
                      .+.....+.--.+=....+..|.+++. +| |+.++.+|++++.++...+...  +.+++ ++.  .+++++.++.+|++
T Consensus        48 ~~~~~~~~~wy~~s~~~~~~nK~vl~~-~~~P~~l~~~~~~~~~l~~~~~~~~--~~~~~-~~~~~~~~~~~~llp~gl~  123 (350)
T PTZ00343         48 WKLALLFLTWYALNVLYVVDNKLALNM-LPLPWTISSLQLFVGWLFALLYWAT--GFRKI-PRIKSLKLFLKNFLPQGLC  123 (350)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHh-CChhHHHHHHHHHHHHHHHHHHHHh--CCCCC-CCCCCHHHHHHHHHHHHHH
Confidence            333333333333334456678999885 99 9999999999998776554322  12222 333  35688899999999


Q ss_pred             H-HHHHHHHHHhhhccchhHHHHhhhhhhHHHHHHHHHhhhhhhcccccccccceehHHHHhhhHHHHhhhcCCcccCCC
Q 028230           87 G-VLSQIFGYTGIACSSPTLSSAISNLTPAFTFTLAVLFRMEKLALRTLSTQAKIIGTMVSISGALVVVLYKGPTIFLGT  165 (211)
Q Consensus        87 g-~~~~~l~~~gl~~tsa~~as~i~~~~Pv~~~lla~l~~~E~~~~~~~~~~~~~~Gi~l~~~Gv~li~~~~g~~~~~~~  165 (211)
                      + .. +...+.++++++++.+.++.++.|++++++++++++||++++      ++.|++++++|+.+.+.  ++      
T Consensus       124 ~~~~-~~~~~~sl~~~svs~~~iika~~Pvft~lls~~~l~ek~s~~------~~l~l~l~v~Gv~l~~~--~~------  188 (350)
T PTZ00343        124 HLFV-HFGAVISMGLGAVSFTHVVKAAEPVFTALLSILFLKQFLNLY------AYLSLIPIVGGVALASV--KE------  188 (350)
T ss_pred             HHHH-HHHHHHHHhhccHHHHHHHHHhhHHHHHHHHHHHhCCCccHH------HHHHHHHHHHHHHheec--cc------
Confidence            9 55 445679999999999999999999999999999999999875      68999999999988752  10      


Q ss_pred             CCCCCCccCccccccCCCCCCchHHHHHHHHHHHHHHHHHHHHcCC
Q 028230          166 SPSSTHSTNSLHWLMGSPSVSNWVTGGFLLAAQCFLLSIWSILLSY  211 (211)
Q Consensus       166 ~~~~~~~~~~~~~~~~~~~~~~~~~G~ll~l~a~~~~a~y~vlq~~  211 (211)
                                        .+.+ ..|+++.++|+++|+.|++..|+
T Consensus       189 ------------------~~~~-~~G~~~~l~s~~~~a~~~i~~k~  215 (350)
T PTZ00343        189 ------------------LHFT-WLAFWCAMLSNLGSSLRSIFAKK  215 (350)
T ss_pred             ------------------chhH-HHHHHHHHHHHHHHHHHHHHHHH
Confidence                              1122 46999999999999999998764

>TIGR03340 phn_DUF6 phosphonate utilization associated putative membrane protein

Probab=99.70  E-value=7.5e-16  Score=131.22  Aligned_cols=162  Identities=15%  Similarity=0.105  Sum_probs=124.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHhhccccccCCCCHHHHHHHHHHHHHH-HHHH
Q 028230           13 LSATVAVECTTVGLNTLFKAAASKGLSYYVFVAYSYPLATLALLPLPLIFRNTTTVVPSFKFSILSRIILLSFIG-VLSQ   91 (211)
Q Consensus        13 ~~~l~~~~~~wg~~~i~~K~~~~~~~~p~~l~~~R~~~A~l~l~~~~~~~~~~~~~~~~~~~~~~~~l~~lg~~g-~~~~   91 (211)
                      ....+.++++|+...+.+|...++ -++.  .++++..+++++.|+...+..+..+ ++.+ +++......+.++ ..++
T Consensus         3 ~~~~~~aa~~~a~~~~~~k~~~~~-~~~~--~~~~~~~~~~~l~~~~~~~~~~~~~-~~~~-~~~~~~~~~~~~~~~~~~   77 (281)
T TIGR03340         3 LTLVVFSALMHAGWNLMAKSHADK-EPDF--LWWALLAHSVLLTPYGLWYLAQVGW-SRLP-ATFWLLLAISAVANMVYF   77 (281)
T ss_pred             HHHHHHHHHHHHHHHHHHhhcCCc-hhHH--HHHHHHHHHHHHHHHHHHhcccCCC-CCcc-hhhHHHHHHHHHHHHHHH
Confidence            456778999999999999965554 3443  4778888888888887653012222 2223 3444455556666 9999


Q ss_pred             HHHHHhhhccchhHHHHhhhhhhHHHHHHHHHhhhhhhcccccccccceehHHHHhhhHHHHhhhcCCcccCCCCCCCCC
Q 028230           92 IFGYTGIACSSPTLSSAISNLTPAFTFTLAVLFRMEKLALRTLSTQAKIIGTMVSISGALVVVLYKGPTIFLGTSPSSTH  171 (211)
Q Consensus        92 ~l~~~gl~~tsa~~as~i~~~~Pv~~~lla~l~~~E~~~~~~~~~~~~~~Gi~l~~~Gv~li~~~~g~~~~~~~~~~~~~  171 (211)
                      .+++.|++++++++++.+.++.|+++.+++++++|||++++      +++|+.+++.|+.++... ++            
T Consensus        78 ~~~~~a~~~~~~~~~~~l~~~~p~~~~l~~~~~~~e~~~~~------~~~g~~~~~~Gv~ll~~~-~~------------  138 (281)
T TIGR03340        78 LGLAQAYHHADVGLVYPLARSSPLLVAIWATLTLGETLSPL------AWLGILIITLGLLVLGLS-RF------------  138 (281)
T ss_pred             HHHHHHHhcCChhhhhhHHhhhHHHHHHHHHHHHcCCCCHH------HHHHHHHHHHHHHHHhcc-cc------------
Confidence            99999999999999999999999999999999999999876      589999999999987621 10            


Q ss_pred             ccCccccccCCCCCCchHHHHHHHHHHHHHHHHHHHHcCC
Q 028230          172 STNSLHWLMGSPSVSNWVTGGFLLAAQCFLLSIWSILLSY  211 (211)
Q Consensus       172 ~~~~~~~~~~~~~~~~~~~G~ll~l~a~~~~a~y~vlq~~  211 (211)
                                  ...+ ..|+.+.++++++|++|+++.|+
T Consensus       139 ------------~~~~-~~g~~~~l~aal~~a~~~i~~k~  165 (281)
T TIGR03340       139 ------------AQHR-RKAYAWALAAALGTAIYSLSDKA  165 (281)
T ss_pred             ------------cccc-hhHHHHHHHHHHHHHHhhhhccc
Confidence                        0111 35888999999999999998774

This family of hydrophobic proteins has some homology to families of integral membrane proteins such as (pfam00892) and may be a permease. It occurs in the vicinity of various types of operons for the catabolism of phosphonates in Vibrio, Pseudomonas, Polaromonas and Thiomicrospira.

>PF00892 EamA: EamA-like transporter family; InterPro: IPR000620 This domain is found in proteins including the Erwinia chrysanthemi PecM protein, which is involved in pectinase, cellulase and blue pigment regulation; and the Salmonella typhimurium PagO protein, the function of which is unknown

Probab=99.67  E-value=3.4e-16  Score=116.05  Aligned_cols=124  Identities=22%  Similarity=0.342  Sum_probs=108.4

Q ss_pred             HHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHhhccccccCCCCHHHHHHHHHHHHHH-HHHHHHHHHhhh
Q 028230           21 CTTVGLNTLFKAAASKGLSYYVFVAYSYPLATLALLPLPLIFRNTTTVVPSFKFSILSRIILLSFIG-VLSQIFGYTGIA   99 (211)
Q Consensus        21 ~~wg~~~i~~K~~~~~~~~p~~l~~~R~~~A~l~l~~~~~~~~~~~~~~~~~~~~~~~~l~~lg~~g-~~~~~l~~~gl~   99 (211)
                      ++||.+.+..|...++ +||....++|+..+++ ++++.... +++.. .+.+.+++......|.++ ...+.+++.+++
T Consensus         1 ~~~a~~~~~~k~~~~~-~~~~~~~~~~~~~~~~-~~~~~~~~-~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~   76 (126)
T PF00892_consen    1 FSWAIYSVFSKKLLKK-ISPLSITFWRFLIAGI-LLILLLIL-GRKPF-KNLSPRQWLWLLFLGLLGTALAYLLYFYALK   76 (126)
T ss_pred             ceeeeHHHHHHHHhcc-CCHHHHHHHHHHHHHH-HHHHHHhh-ccccc-cCCChhhhhhhhHhhccceehHHHHHHHHHH
Confidence            4799999999998875 9999999999999997 66666555 44332 355678888899999998 999999999999


Q ss_pred             ccchhHHHHhhhhhhHHHHHHHHHhhhhhhcccccccccceehHHHHhhhHHHHh
Q 028230          100 CSSPTLSSAISNLTPAFTFTLAVLFRMEKLALRTLSTQAKIIGTMVSISGALVVV  154 (211)
Q Consensus       100 ~tsa~~as~i~~~~Pv~~~lla~l~~~E~~~~~~~~~~~~~~Gi~l~~~Gv~li~  154 (211)
                      +++++.++.+.++.|+++.++++++++|+++++      +++|+++.+.|+++++
T Consensus        77 ~~~~~~~~~~~~~~pv~~~i~~~~~~~e~~~~~------~~~g~~l~~~g~~l~~  125 (126)
T PF00892_consen   77 YISASIVSILQYLSPVFAAILGWLFLGERPSWR------QIIGIILIIIGVVLIS  125 (126)
T ss_pred             hcchhHHHHHHHHHHHHHHHHHHHHcCCCCCHH------HHHHHHHHHHHHHHHH
Confidence            999999999999999999999999999999875      6899999999998764

Many members of this family are classed as drug/metabolite transporters and have no known function. They are predicted to be integral membrane proteins and many of the proteins contain two copies of this domain [].; GO: 0016020 membrane

>COG0697 RhaT Permeases of the drug/metabolite transporter (DMT) superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / General function prediction only]

Probab=99.63  E-value=2.4e-14  Score=120.32  Aligned_cols=170  Identities=25%  Similarity=0.319  Sum_probs=130.7

Q ss_pred             HhHHHHHHHHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHhhccccccCCCCHHHHHHHHHHHHHH
Q 028230            8 REALLLSATVAVECTTVGLNTLFKAAASKGLSYYVFVAYSYPLATLALLPLPLIFRNTTTVVPSFKFSILSRIILLSFIG   87 (211)
Q Consensus         8 ~~~~~~~~l~~~~~~wg~~~i~~K~~~~~~~~p~~l~~~R~~~A~l~l~~~~~~~~~~~~~~~~~~~~~~~~l~~lg~~g   87 (211)
                      +........+...+.|+.+....|...+...++....+.|+..+.+++.+....  ++... .+ ..+++......+.++
T Consensus         4 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~-~~-~~~~~~~~~~~~~~~   79 (292)
T COG0697           4 ALLLGLLALLLWGLLWGLSFIALKLAVESLDPFLFAAALRFLIAALLLLPLLLL--EPRGL-RP-ALRPWLLLLLLALLG   79 (292)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHhcccCChHHHHHHHHHHHHHHHHHHHHh--hcccc-cc-cccchHHHHHHHHHH
Confidence            345567788888899999999999987643677777777999998885544322  11111 11 122244667777777


Q ss_pred             -HHHHHHHHHhhhccchhHHHHhhhhhhHHHHHHHH-HhhhhhhcccccccccceehHHHHhhhHHHHhhhcCCcccCCC
Q 028230           88 -VLSQIFGYTGIACSSPTLSSAISNLTPAFTFTLAV-LFRMEKLALRTLSTQAKIIGTMVSISGALVVVLYKGPTIFLGT  165 (211)
Q Consensus        88 -~~~~~l~~~gl~~tsa~~as~i~~~~Pv~~~lla~-l~~~E~~~~~~~~~~~~~~Gi~l~~~Gv~li~~~~g~~~~~~~  165 (211)
                       ..++.+++.++++++++.++.+.++.|+++.+++. ++++||++++      ++.|+.+++.|++++...++.      
T Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~l~~~~p~~~~~~~~~~~~~e~~~~~------~~~~~~~~~~Gv~lv~~~~~~------  147 (292)
T COG0697          80 LALPFLLLFLALKYTSASVASLIIGLLPLFTALLAVLLLLGERLSLL------QILGILLALAGVLLILLGGGG------  147 (292)
T ss_pred             HHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHccCCCcHH------HHHHHHHHHHhHHheecCCCc------
Confidence             99999999999999999999999999999999997 7779999875      589999999999988632110      


Q ss_pred             CCCCCCccCccccccCCCCCCchHHHHHHHHHHHHHHHHHHHHcCC
Q 028230          166 SPSSTHSTNSLHWLMGSPSVSNWVTGGFLLAAQCFLLSIWSILLSY  211 (211)
Q Consensus       166 ~~~~~~~~~~~~~~~~~~~~~~~~~G~ll~l~a~~~~a~y~vlq~~  211 (211)
                                       .... ...|+++.+.++++|++|.+.+++
T Consensus       148 -----------------~~~~-~~~g~~~~l~a~~~~a~~~~~~~~  175 (292)
T COG0697         148 -----------------GGIL-SLLGLLLALAAALLWALYTALVKR  175 (292)
T ss_pred             -----------------chhH-HHHHHHHHHHHHHHHHHHHHHHHH
Confidence                             0001 468999999999999999999874

>PF06027 DUF914: Eukaryotic protein of unknown function (DUF914); InterPro: IPR009262 This family consists of several hypothetical proteins of unknown function

Probab=99.58  E-value=1.4e-13  Score=119.88  Aligned_cols=166  Identities=20%  Similarity=0.207  Sum_probs=119.1

Q ss_pred             HHHHHHHHHHHHHHHhCCCC-hHHHHHHHHHHHHHHHHHHHHHhhccc-cccCCCCHHHHHHHHHHHHHHHHHHHHHHHh
Q 028230           20 ECTTVGLNTLFKAAASKGLS-YYVFVAYSYPLATLALLPLPLIFRNTT-TVVPSFKFSILSRIILLSFIGVLSQIFGYTG   97 (211)
Q Consensus        20 ~~~wg~~~i~~K~~~~~~~~-p~~l~~~R~~~A~l~l~~~~~~~~~~~-~~~~~~~~~~~~~l~~lg~~g~~~~~l~~~g   97 (211)
                      +++=.++.+.+....+.|.+ |..-.++=+..-.++..+....+ +++ +. .+..+++|.+.+++|++-...+++...|
T Consensus        22 sl~~~~t~~~s~~l~~~~~~~P~~Qs~~~Y~~l~~vy~~~~~~r-~~~~~~-~~~~~~~~w~y~lla~~Dv~aN~~~v~a   99 (334)
T PF06027_consen   22 SLCITGTGTFSSLLANKGVNIPTFQSFFNYVLLALVYTPILLYR-RGFKKW-LKVLKRPWWKYFLLALLDVEANYLVVLA   99 (334)
T ss_pred             HHHHHhHHHHHHHHHhcCccCcHHHHHHHHHHHHHHHhhhhhhc-cccccc-hhhcchhHHHHHHHHHHHHHHHHHHHHH
Confidence            34444445555544444444 55444555554455555665544 222 22 2233566777888888768889999999


Q ss_pred             hhccchhHHHHhhhhhhHHHHHHHHHhhhhhhcccccccccceehHHHHhhhHHHHhhhcCCcccCCCCCCCCCccCccc
Q 028230           98 IACSSPTLSSAISNLTPAFTFTLAVLFRMEKLALRTLSTQAKIIGTMVSISGALVVVLYKGPTIFLGTSPSSTHSTNSLH  177 (211)
Q Consensus        98 l~~tsa~~as~i~~~~Pv~~~lla~l~~~E~~~~~~~~~~~~~~Gi~l~~~Gv~li~~~~g~~~~~~~~~~~~~~~~~~~  177 (211)
                      ++|||.+.+.++..+.-+++++++++++|||.++.      |++|+++|++|+.+++..+....             +. 
T Consensus       100 ~~yTsvtS~~lL~~~~i~~~~~LS~~fL~~ry~~~------~~~gv~i~i~Gv~lv~~sD~~~~-------------~~-  159 (334)
T PF06027_consen  100 YQYTSVTSVQLLDCTSIPFVMILSFIFLKRRYSWF------HILGVLICIAGVVLVVVSDVLSG-------------SD-  159 (334)
T ss_pred             hhcccHhHHHhhhhhhhHHHHHHHHHHHHhhhhHH------HHHHHHHHHhhhhheeeeccccc-------------cc-
Confidence            99999999999999999999999999999999875      69999999999998875442110             00 


Q ss_pred             cccCCCCCCchHHHHHHHHHHHHHHHHHHHHcCC
Q 028230          178 WLMGSPSVSNWVTGGFLLAAQCFLLSIWSILLSY  211 (211)
Q Consensus       178 ~~~~~~~~~~~~~G~ll~l~a~~~~a~y~vlq~~  211 (211)
                          +..+.+..+||++++.|++.||+|+|+|+|
T Consensus       160 ----~~~~~~~i~GDll~l~~a~lya~~nV~~E~  189 (334)
T PF06027_consen  160 ----SSSGSNPILGDLLALLGAILYAVSNVLEEK  189 (334)
T ss_pred             ----CCCCCccchhHHHHHHHHHHHHHHHHHHHH
Confidence                123455689999999999999999999975

Some of the sequences in this family are annotated as putative membrane proteins.

>COG2510 Predicted membrane protein [Function unknown]

Probab=99.51  E-value=7.6e-14  Score=104.15  Aligned_cols=135  Identities=16%  Similarity=0.134  Sum_probs=116.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHhhccccccCCCCHHHHHHHHHHHHHHHHHH
Q 028230           12 LLSATVAVECTTVGLNTLFKAAASKGLSYYVFVAYSYPLATLALLPLPLIFRNTTTVVPSFKFSILSRIILLSFIGVLSQ   91 (211)
Q Consensus        12 ~~~~l~~~~~~wg~~~i~~K~~~~~~~~p~~l~~~R~~~A~l~l~~~~~~~~~~~~~~~~~~~~~~~~l~~lg~~g~~~~   91 (211)
                      ...+.++++++||...++.|++++ ++||..-.+.|-.+..+++..+.+.. ++.+.....+.|.|..+.+-|+.+...-
T Consensus         4 ~~~~ALLsA~fa~L~~iF~KIGl~-~vdp~~At~IRtiVi~~~l~~v~~~~-g~~~~~~~~~~k~~lflilSGla~glsw   81 (140)
T COG2510           4 AIIYALLSALFAGLTPIFAKIGLE-GVDPDFATTIRTIVILIFLLIVLLVT-GNWQAGGEIGPKSWLFLILSGLAGGLSW   81 (140)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhcc-ccCccHHHHHHHHHHHHHHHHHHHhc-CceecccccCcceehhhhHHHHHHHHHH
Confidence            446778899999999999999997 59999999999999988888887765 4333212356788888888887669999


Q ss_pred             HHHHHhhhccchhHHHHhhhhhhHHHHHHHHHhhhhhhcccccccccceehHHHHhhhHHHHh
Q 028230           92 IFGYTGIACSSPTLSSAISNLTPAFTFTLAVLFRMEKLALRTLSTQAKIIGTMVSISGALVVV  154 (211)
Q Consensus        92 ~l~~~gl~~tsa~~as~i~~~~Pv~~~lla~l~~~E~~~~~~~~~~~~~~Gi~l~~~Gv~li~  154 (211)
                      .+||.+++.-.++..+-+-.+.|+++.++++++++||++.+      +++|+++..+|+++++
T Consensus        82 l~Yf~ALk~G~as~VvPldk~svvl~~lls~lfL~E~ls~~------~~iG~~LI~~Gailvs  138 (140)
T COG2510          82 LLYFRALKKGKASRVVPLDKTSVVLAVLLSILFLGERLSLP------TWIGIVLIVIGAILVS  138 (140)
T ss_pred             HHHHHHHhcCCcceEEEcccccHHHHHHHHHHHhcCCCCHH------HHHHHHHHHhCeeeEe
Confidence            99999999999999999999999999999999999999876      5899999999998764

>TIGR00950 2A78 Carboxylate/Amino Acid/Amine Transporter

Probab=99.45  E-value=3e-12  Score=107.05  Aligned_cols=132  Identities=20%  Similarity=0.285  Sum_probs=112.1

Q ss_pred             HhHHHHHHHHHHHHHHHHHHHHHHHHHhCCCC--hHHHHHHHHHHHHHHHHHHHHHhhccccccCCCCHHHHHHHHHHHH
Q 028230            8 REALLLSATVAVECTTVGLNTLFKAAASKGLS--YYVFVAYSYPLATLALLPLPLIFRNTTTVVPSFKFSILSRIILLSF   85 (211)
Q Consensus         8 ~~~~~~~~l~~~~~~wg~~~i~~K~~~~~~~~--p~~l~~~R~~~A~l~l~~~~~~~~~~~~~~~~~~~~~~~~l~~lg~   85 (211)
                      .+.++....+.++++|+.+.+..|...++ .+  +..+..+|+.++.+++.|+.... ++.   +..+.+++..++.+|+
T Consensus       125 ~~~~G~~~~l~a~~~~a~~~~~~k~~~~~-~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~---~~~~~~~~~~~~~~~~  199 (260)
T TIGR00950       125 INPAGLLLGLGSGISFALGTVLYKRLVKK-EGPELLQFTGWVLLLGALLLLPFAWFL-GPN---PQALSLQWGALLYLGL  199 (260)
T ss_pred             ccHHHHHHHHHHHHHHHHHHHHHhHHhhc-CCchHHHHHHHHHHHHHHHHHHHHHhc-CCC---CCcchHHHHHHHHHHH
Confidence            34678899999999999999999998753 66  44566678999999999987664 332   2235678888899999


Q ss_pred             HH-HHHHHHHHHhhhccchhHHHHhhhhhhHHHHHHHHHhhhhhhcccccccccceehHHHHhhhH
Q 028230           86 IG-VLSQIFGYTGIACSSPTLSSAISNLTPAFTFTLAVLFRMEKLALRTLSTQAKIIGTMVSISGA  150 (211)
Q Consensus        86 ~g-~~~~~l~~~gl~~tsa~~as~i~~~~Pv~~~lla~l~~~E~~~~~~~~~~~~~~Gi~l~~~Gv  150 (211)
                      ++ .+.+.+++.++++++++.++.+.++.|++++++++++++|+++.+      +++|.++.+.|+
T Consensus       200 ~~~~~~~~~~~~a~~~~~~~~~s~~~~~~pv~~~ll~~~~~~E~~~~~------~~~G~~li~~g~  259 (260)
T TIGR00950       200 IGTALAYFLWNKGLTLVDPSAASILALAEPLVALLLGLLILGETLSLP------QLIGGALIIAAV  259 (260)
T ss_pred             HHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHHhCCCCCHH------HHHHHHHHHHhc
Confidence            99 899999999999999999999999999999999999999999875      589999998886

>PF13536 EmrE: Multidrug resistance efflux transporter

Probab=99.37  E-value=2e-12  Score=95.91  Aligned_cols=103  Identities=23%  Similarity=0.382  Sum_probs=84.6

Q ss_pred             HHHHHHHHHHHHHHHHHhhccccc-cCCCCHHHHHHHHHHHHHH-HHHHHHHHHhhhccchhHHHHhhhhhhHHHHHHHH
Q 028230           45 AYSYPLATLALLPLPLIFRNTTTV-VPSFKFSILSRIILLSFIG-VLSQIFGYTGIACSSPTLSSAISNLTPAFTFTLAV  122 (211)
Q Consensus        45 ~~R~~~A~l~l~~~~~~~~~~~~~-~~~~~~~~~~~l~~lg~~g-~~~~~l~~~gl~~tsa~~as~i~~~~Pv~~~lla~  122 (211)
                      .+|+..+.+++..+...+ ++... .+..+++++.+....|+++ ..++.+++.++++++ +.++.+.+++|+++.+++.
T Consensus         2 a~r~~~~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~a~~~~~-~~v~~i~~~~pi~~~ll~~   79 (113)
T PF13536_consen    2 AFRYLFSVLFLLIILLIR-GRLRDLFRALRRKPWLWLILAGLLGFGVAYLLFFYALSYAP-ALVAAIFSLSPIFTALLSW   79 (113)
T ss_pred             HHHHHHHHHHHHHHHHHH-ccHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHhCc-HHHHHHHHHHHHHHHHHHH
Confidence            689999999988887765 32111 0223345566777889988 799999999999999 5888999999999999999


Q ss_pred             HhhhhhhcccccccccceehHHHHhhhHHHHhh
Q 028230          123 LFRMEKLALRTLSTQAKIIGTMVSISGALVVVL  155 (211)
Q Consensus       123 l~~~E~~~~~~~~~~~~~~Gi~l~~~Gv~li~~  155 (211)
                      +++|||++++      ++.|++++++|++++..
T Consensus        80 ~~~~er~~~~------~~~a~~l~~~Gv~li~~  106 (113)
T PF13536_consen   80 LFFKERLSPR------RWLAILLILIGVILIAW  106 (113)
T ss_pred             HHhcCCCCHH------HHHHHHHHHHHHHHHhh
Confidence            9999999876      58999999999999974

>TIGR00776 RhaT RhaT L-rhamnose-proton symporter family protein

Probab=99.35  E-value=2e-11  Score=104.75  Aligned_cols=169  Identities=15%  Similarity=0.044  Sum_probs=119.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHhhccccccCCCCHHHHHHHHHHHHHH-HHH
Q 028230           12 LLSATVAVECTTVGLNTLFKAAASKGLSYYVFVAYSYPLATLALLPLPLIFRNTTTVVPSFKFSILSRIILLSFIG-VLS   90 (211)
Q Consensus        12 ~~~~l~~~~~~wg~~~i~~K~~~~~~~~p~~l~~~R~~~A~l~l~~~~~~~~~~~~~~~~~~~~~~~~l~~lg~~g-~~~   90 (211)
                      +++..++++++||.+++..|...  +.+|.++.  |..++.+++..+.... ++    ++.+.+.......++-.. ...
T Consensus         2 ~~l~~lia~~~wGs~g~~~k~~~--g~~~~~~~--~~~~g~l~~~~~~~~~-~~----~~~~~~~~~~~g~l~G~~w~ig   72 (290)
T TIGR00776         2 DILIALIPALFWGSFVLINVKIG--GGPYSQTL--GTTFGALILSIAIAIF-VL----PEFWALSIFLVGLLSGAFWALG   72 (290)
T ss_pred             chHHHHHHHHHHhhhHHHHhccC--CCHHHHHH--HHHHHHHHHHHHHHHH-hC----CcccccHHHHHHHHHHHHHHhh
Confidence            35778889999999999999753  68888776  8888888777665554 21    111212222222222223 677


Q ss_pred             HHHHHHhhhccchhHHHHhhh-hhhHHHHHHHHHhhhhhhcccccccccceehHHHHhhhHHHHhhhcCCcccCCCCCCC
Q 028230           91 QIFGYTGIACSSPTLSSAISN-LTPAFTFTLAVLFRMEKLALRTLSTQAKIIGTMVSISGALVVVLYKGPTIFLGTSPSS  169 (211)
Q Consensus        91 ~~l~~~gl~~tsa~~as~i~~-~~Pv~~~lla~l~~~E~~~~~~~~~~~~~~Gi~l~~~Gv~li~~~~g~~~~~~~~~~~  169 (211)
                      |.+++.++++++.+.|-.+.+ +.|++..+.+.+++|||.++++.  ...++|++++++|++++...+++..        
T Consensus        73 ~~~~~~ai~~~gva~a~~i~~~~~~v~~~l~~~~~f~e~~t~~~~--~~~~~g~~l~l~G~~l~~~~~~~~~--------  142 (290)
T TIGR00776        73 QINQFKSMRYMGVSKTMPISTGFQLVGGTLFGVIVFGEWSTSIQT--LLGLLALILIIIGVYLTSRSKDKSA--------  142 (290)
T ss_pred             hhhHHHHHHHHhHHHHhHHHHHHHHHHHHHHHHHHhhhccchHHH--HHHHHHHHHHHHhHheEEecccccc--------
Confidence            899999999999999998888 88889999999999999876521  1128899999999888753321100        


Q ss_pred             CCccCccccccCCCCCCchHHHHHHHHHHHHHHHHHHHHcC
Q 028230          170 THSTNSLHWLMGSPSVSNWVTGGFLLAAQCFLLSIWSILLS  210 (211)
Q Consensus       170 ~~~~~~~~~~~~~~~~~~~~~G~ll~l~a~~~~a~y~vlq~  210 (211)
                            .     .....+..+|.++.+.|.++|+.|.+.-|
T Consensus       143 ------~-----~~~~~~~~~Gi~~~l~sg~~y~~~~~~~~  172 (290)
T TIGR00776       143 ------G-----IKSEFNFKKGILLLLMSTIGYLVYVVVAK  172 (290)
T ss_pred             ------c-----cccccchhhHHHHHHHHHHHHHHHHHHHH
Confidence                  0     00002335799999999999999998644

These proteins are members of the L-Rhamnose Symporter (RhaT) Family (TC 2.A.7). This family includes two characterized members, both of which function as L-rhamnose:H+ symporters and have 10 GES predicted transmembrane domains.

>PRK10532 threonine and homoserine efflux system; Provisional

Probab=99.24  E-value=4.3e-10  Score=96.43  Aligned_cols=135  Identities=12%  Similarity=0.082  Sum_probs=110.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHhhccccccCCCCHHHHHHHHHHHHHH-H
Q 028230           10 ALLLSATVAVECTTVGLNTLFKAAASKGLSYYVFVAYSYPLATLALLPLPLIFRNTTTVVPSFKFSILSRIILLSFIG-V   88 (211)
Q Consensus        10 ~~~~~~l~~~~~~wg~~~i~~K~~~~~~~~p~~l~~~R~~~A~l~l~~~~~~~~~~~~~~~~~~~~~~~~l~~lg~~g-~   88 (211)
                      ..+.+..+.+.++|+.+.+..|...+ ..+|...... ..++++++.|+.... +. .  ...+...+...+.+|+++ .
T Consensus       147 ~~G~ll~l~aa~~~a~~~v~~r~~~~-~~~~~~~~~~-~~~~~~~l~~~~~~~-~~-~--~~~~~~~~~~~l~lgv~~t~  220 (293)
T PRK10532        147 LTGAALALGAGACWAIYILSGQRAGA-EHGPATVAIG-SLIAALIFVPIGALQ-AG-E--ALWHWSILPLGLAVAILSTA  220 (293)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHhc-cCCchHHHHH-HHHHHHHHHHHHHHc-cC-c--ccCCHHHHHHHHHHHHHHHH
Confidence            45788899999999999999998765 4788877544 466677777776554 22 1  123445555667899999 8


Q ss_pred             HHHHHHHHhhhccchhHHHHhhhhhhHHHHHHHHHhhhhhhcccccccccceehHHHHhhhHHHHhhh
Q 028230           89 LSQIFGYTGIACSSPTLSSAISNLTPAFTFTLAVLFRMEKLALRTLSTQAKIIGTMVSISGALVVVLY  156 (211)
Q Consensus        89 ~~~~l~~~gl~~tsa~~as~i~~~~Pv~~~lla~l~~~E~~~~~~~~~~~~~~Gi~l~~~Gv~li~~~  156 (211)
                      +.+.++++++++++|+.++++.++.|++..++++++++|+++..      +++|.++.+.|+++....
T Consensus       221 ~~~~l~~~~~~~~~a~~as~~~~l~Pv~a~l~~~l~lgE~~~~~------~~iG~~lIl~~~~~~~~~  282 (293)
T PRK10532        221 LPYSLEMIALTRLPTRTFGTLMSMEPALAAVSGMIFLGETLTLI------QWLALGAIIAASMGSTLT  282 (293)
T ss_pred             HHHHHHHHHHHhcChhHHHHHHHhHHHHHHHHHHHHhCCCCcHH------HHHHHHHHHHHHHHHHhc
Confidence            99999999999999999999999999999999999999999875      689999999999888754

>PRK11272 putative DMT superfamily transporter inner membrane protein; Provisional

Probab=99.22  E-value=4.1e-10  Score=96.51  Aligned_cols=136  Identities=13%  Similarity=0.008  Sum_probs=113.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHhhccccccCCCCHHHHHHHHHHHHHH-H
Q 028230           10 ALLLSATVAVECTTVGLNTLFKAAASKGLSYYVFVAYSYPLATLALLPLPLIFRNTTTVVPSFKFSILSRIILLSFIG-V   88 (211)
Q Consensus        10 ~~~~~~l~~~~~~wg~~~i~~K~~~~~~~~p~~l~~~R~~~A~l~l~~~~~~~~~~~~~~~~~~~~~~~~l~~lg~~g-~   88 (211)
                      ..+.+..+.++++|+.+.+..|... . -++....+++..++++++.++.... +.... ...+.+++..+..+|+++ .
T Consensus       149 ~~G~l~~l~a~~~~a~~~~~~~~~~-~-~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~-~~~~~~~~~~i~~l~i~~s~  224 (292)
T PRK11272        149 PWGAILILIASASWAFGSVWSSRLP-L-PVGMMAGAAEMLAAGVVLLIASLLS-GERLT-ALPTLSGFLALGYLAVFGSI  224 (292)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHhcC-C-CcchHHHHHHHHHHHHHHHHHHHHc-CCccc-ccCCHHHHHHHHHHHHHHHH
Confidence            4688899999999999999999753 2 2456677889999999888886553 32111 112457788889999999 8


Q ss_pred             HHHHHHHHhhhccchhHHHHhhhhhhHHHHHHHHHhhhhhhcccccccccceehHHHHhhhHHHHhh
Q 028230           89 LSQIFGYTGIACSSPTLSSAISNLTPAFTFTLAVLFRMEKLALRTLSTQAKIIGTMVSISGALVVVL  155 (211)
Q Consensus        89 ~~~~l~~~gl~~tsa~~as~i~~~~Pv~~~lla~l~~~E~~~~~~~~~~~~~~Gi~l~~~Gv~li~~  155 (211)
                      +.+.+++.++++.++++++.+.++.|++++++++++++|++++.      +++|.++.+.|+.++..
T Consensus       225 ~~~~l~~~~~~~~~~~~~s~~~~l~Pi~a~i~~~~~l~E~~t~~------~iiG~~lIi~gv~~~~~  285 (292)
T PRK11272        225 IAISAYMYLLRNVRPALATSYAYVNPVVAVLLGTGLGGETLSPI------EWLALGVIVFAVVLVTL  285 (292)
T ss_pred             HHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHcCCCCcHH------HHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999875      69999999999988864

>PLN00411 nodulin MtN21 family protein; Provisional

Probab=99.11  E-value=3.1e-09  Score=93.87  Aligned_cols=138  Identities=12%  Similarity=0.096  Sum_probs=104.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhCCCCh-HHHHHHHHHHHHHHHHHHHHHhhccccc---cCCCCHHHHHHHHHHHHHH
Q 028230           12 LLSATVAVECTTVGLNTLFKAAASKGLSY-YVFVAYSYPLATLALLPLPLIFRNTTTV---VPSFKFSILSRIILLSFIG   87 (211)
Q Consensus        12 ~~~~l~~~~~~wg~~~i~~K~~~~~~~~p-~~l~~~R~~~A~l~l~~~~~~~~~~~~~---~~~~~~~~~~~l~~lg~~g   87 (211)
                      +.+.++.++++|+.+.+..|..... .|| ...+++...++++.+.+..... ++...   ....+.. ...++..|+..
T Consensus       190 G~~l~l~aa~~wa~~~il~~~~~~~-~~~~~~~t~~~~~~~~~~~~~~~l~~-~~~~~~~~~~~~~~~-~~~i~y~~i~t  266 (358)
T PLN00411        190 GGALLTIQGIFVSVSFILQAHIMSE-YPAAFTVSFLYTVCVSIVTSMIGLVV-EKNNPSVWIIHFDIT-LITIVTMAIIT  266 (358)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHH-cCcHhHHHHHHHHHHHHHHHHHHHHH-ccCCcccceeccchH-HHHHHHHHHHH
Confidence            6678889999999999999987664 555 4667787777777766665554 43211   0111222 22344455433


Q ss_pred             HHHHHHHHHhhhccchhHHHHhhhhhhHHHHHHHHHhhhhhhcccccccccceehHHHHhhhHHHHhhhcC
Q 028230           88 VLSQIFGYTGIACSSPTLSSAISNLTPAFTFTLAVLFRMEKLALRTLSTQAKIIGTMVSISGALVVVLYKG  158 (211)
Q Consensus        88 ~~~~~l~~~gl~~tsa~~as~i~~~~Pv~~~lla~l~~~E~~~~~~~~~~~~~~Gi~l~~~Gv~li~~~~g  158 (211)
                      .+.+.++++++++.+|+.++++.++.|++++++++++++|++++.      +++|.++.+.|+.+....+.
T Consensus       267 ~lay~lw~~~v~~~ga~~as~~~~L~PV~a~llg~l~LgE~lt~~------~~iG~~LIl~Gv~l~~~~~~  331 (358)
T PLN00411        267 SVYYVIHSWTVRHKGPLYLAIFKPLSILIAVVMGAIFLNDSLYLG------CLIGGILITLGFYAVMWGKA  331 (358)
T ss_pred             HHHHHHHHHHHhccCchHHHHHHhHHHHHHHHHHHHHhCCCCcHH------HHHHHHHHHHHHHHHHhhhh
Confidence            567779999999999999999999999999999999999999875      58999999999998875544

>PRK11689 aromatic amino acid exporter; Provisional

Probab=99.11  E-value=2.3e-09  Score=92.00  Aligned_cols=134  Identities=18%  Similarity=0.143  Sum_probs=103.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHhhccccccCCCCHHHHHHHHHHHHHHHH
Q 028230           10 ALLLSATVAVECTTVGLNTLFKAAASKGLSYYVFVAYSYPLATLALLPLPLIFRNTTTVVPSFKFSILSRIILLSFIGVL   89 (211)
Q Consensus        10 ~~~~~~l~~~~~~wg~~~i~~K~~~~~~~~p~~l~~~R~~~A~l~l~~~~~~~~~~~~~~~~~~~~~~~~l~~lg~~g~~   89 (211)
                      ..+.++.+.++++|+.+.+..|...+ +.+|.....   ..+++.+.+..... +...  ...+.+.+..++..|+...+
T Consensus       155 ~~G~~~~l~aa~~~A~~~v~~k~~~~-~~~~~~~~~---~~~~~~l~~~~~~~-~~~~--~~~~~~~~~~l~~~~~~t~~  227 (295)
T PRK11689        155 PLSYGLAFIGAFIWAAYCNVTRKYAR-GKNGITLFF---ILTALALWIKYFLS-PQPA--MVFSLPAIIKLLLAAAAMGF  227 (295)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHhhccC-CCCchhHHH---HHHHHHHHHHHHHh-cCcc--ccCCHHHHHHHHHHHHHHHH
Confidence            34788999999999999999998654 478876532   33444444433333 2111  23456677777777743388


Q ss_pred             HHHHHHHhhhccchhHHHHhhhhhhHHHHHHHHHhhhhhhcccccccccceehHHHHhhhHHHHhhh
Q 028230           90 SQIFGYTGIACSSPTLSSAISNLTPAFTFTLAVLFRMEKLALRTLSTQAKIIGTMVSISGALVVVLY  156 (211)
Q Consensus        90 ~~~l~~~gl~~tsa~~as~i~~~~Pv~~~lla~l~~~E~~~~~~~~~~~~~~Gi~l~~~Gv~li~~~  156 (211)
                      .+.+++.++++++++.++.+.++.|++..++++++++|+++..      +++|.++.+.|+.+....
T Consensus       228 ~~~l~~~al~~~~a~~~s~~~~l~Pv~a~i~~~~~lgE~~~~~------~~iG~~lI~~gv~~~~~~  288 (295)
T PRK11689        228 GYAAWNVGILHGNMTLLATASYFTPVLSAALAALLLSTPLSFS------FWQGVAMVTAGSLLCWLA  288 (295)
T ss_pred             HHHHHHHHHHccCHHHHHHHHHhHHHHHHHHHHHHhCCCCcHH------HHHHHHHHHHhHHHHhhh
Confidence            9999999999999999999999999999999999999999875      689999999999887643

>COG2962 RarD Predicted permeases [General function prediction only]

Probab=99.06  E-value=7.7e-09  Score=87.45  Aligned_cols=143  Identities=15%  Similarity=0.041  Sum_probs=112.7

Q ss_pred             HhHHHHHHHHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHhhccccccC-CCCHHHHHHHHHHHHH
Q 028230            8 REALLLSATVAVECTTVGLNTLFKAAASKGLSYYVFVAYSYPLATLALLPLPLIFRNTTTVVP-SFKFSILSRIILLSFI   86 (211)
Q Consensus         8 ~~~~~~~~l~~~~~~wg~~~i~~K~~~~~~~~p~~l~~~R~~~A~l~l~~~~~~~~~~~~~~~-~~~~~~~~~l~~lg~~   86 (211)
                      +..++++..+.+.++||..+...|.. + .+|+.++...|..-+..+++.+....|+++..+. ..++|.+..+.+.+.+
T Consensus         4 ~~~~Gil~~l~Ay~lwG~lp~y~kll-~-~~~~~eIlahRviwS~~~~l~ll~~~r~~~~~~~~~~~p~~~~~~~l~a~l   81 (293)
T COG2962           4 DSRKGILLALLAYLLWGLLPLYFKLL-E-PLPATEILAHRVIWSFPFMLALLFLLRQWRELKQLLKQPKTLLMLALTALL   81 (293)
T ss_pred             cccchhHHHHHHHHHHHHHHHHHHHH-c-cCCHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhCcHHHHHHHHHHHH
Confidence            34679999999999999999999974 4 4999999999999888777666555411111100 1123445555555555


Q ss_pred             HHHHHHHHHHhhhccchhHHHHhhhhhhHHHHHHHHHhhhhhhcccccccccceehHHHHhhhHHHHhhhcC
Q 028230           87 GVLSQIFGYTGIACSSPTLSSAISNLTPAFTFTLAVLFRMEKLALRTLSTQAKIIGTMVSISGALVVVLYKG  158 (211)
Q Consensus        87 g~~~~~l~~~gl~~tsa~~as~i~~~~Pv~~~lla~l~~~E~~~~~~~~~~~~~~Gi~l~~~Gv~li~~~~g  158 (211)
                      -+.+-..|.++.+.-.+-++|+=.+.+|++.++++.+++|||+++      .|++.+.++.+||.......|
T Consensus        82 i~~nW~lfiWAvn~g~~leaSLGY~InPL~~VllG~lflkErls~------~Q~iAV~lA~~GV~~~~~~~g  147 (293)
T COG2962          82 IGLNWWLFIWAVNNGHVLEASLGYFINPLVNVLLGRLFLKERLSR------LQWIAVGLAAAGVLIQTWLLG  147 (293)
T ss_pred             HHHHHHHhheecCCCchhHHHhHHHHHHHHHHHHHHHHHHhhccH------HHHHHHHHHHHHHHHHHHHcC
Confidence            578888999999999999999999999999999999999999975      579999999999998876443

>TIGR00817 tpt Tpt phosphate/phosphoenolpyruvate translocator

Probab=99.03  E-value=2.2e-09  Score=92.18  Aligned_cols=141  Identities=17%  Similarity=0.180  Sum_probs=107.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHHHHHHHHHHhhccccccCC--------CCHHHHHH-
Q 028230           10 ALLLSATVAVECTTVGLNTLFKAAASK-GLSYYVFVAYSYPLATLALLPLPLIFRNTTTVVPS--------FKFSILSR-   79 (211)
Q Consensus        10 ~~~~~~l~~~~~~wg~~~i~~K~~~~~-~~~p~~l~~~R~~~A~l~l~~~~~~~~~~~~~~~~--------~~~~~~~~-   79 (211)
                      ..+.+..++++++|+...+..|...++ ++||..+.++....+++.+.|+.... +.....+.        ........ 
T Consensus       144 ~~G~~~~l~a~~~~a~~~v~~k~~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~  222 (302)
T TIGR00817       144 WAGFLSAMISNITFVSRNIFSKKAMTIKSLDKTNLYAYISIMSLFLLSPPAFIT-EGPPFLPHGFMQAISGVNVTKIYTV  222 (302)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhccCCCCcccHHHHHHHHHHHHHHHHHHHH-cchHHHHHHHHHhhcccCchHHHHH
Confidence            458888999999999999999987651 48999999999999999999998765 32110000        00001111 


Q ss_pred             HHHHHHHH-HHHHHHHHHhhhccchhHHHHhhhhhhHHHHHHHHHhhhhhhcccccccccceehHHHHhhhHHHHhhhc
Q 028230           80 IILLSFIG-VLSQIFGYTGIACSSPTLSSAISNLTPAFTFTLAVLFRMEKLALRTLSTQAKIIGTMVSISGALVVVLYK  157 (211)
Q Consensus        80 l~~lg~~g-~~~~~l~~~gl~~tsa~~as~i~~~~Pv~~~lla~l~~~E~~~~~~~~~~~~~~Gi~l~~~Gv~li~~~~  157 (211)
                      .+..+... ..++.+++.++++++|+.+++..+..|++++++++++++|+++.+      +++|.++.++|+.+....|
T Consensus       223 ~~~~~~~~~~~~~~~~~~~l~~~sa~t~sv~~~l~pv~~~~~~~~~lge~lt~~------~~~G~~lil~Gv~l~~~~k  295 (302)
T TIGR00817       223 SLVAAMGFFHFYQQVAFMLLGRVSPLTHSVGNCMKRVVVIVVSILFFGTKISPQ------QVFGTGIAIAGVFLYSRVK  295 (302)
T ss_pred             HHHHHHHHHHHHHHHHHHHHccCCchHHHHHhhhhhhheeeeehhhcCCCCchh------HHHHHHHHHHHHHHHHHHh
Confidence            22333323 445567889999999999999999999999999999999999875      5899999999998886443

specificities overlap.

>PRK11453 O-acetylserine/cysteine export protein; Provisional

Probab=99.02  E-value=1.9e-08  Score=86.49  Aligned_cols=139  Identities=17%  Similarity=0.211  Sum_probs=105.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhCC--CChHHHHHHHHHHHHHHHHHHHHHhhcccc----ccCCCCHHHHHHHHHH
Q 028230           10 ALLLSATVAVECTTVGLNTLFKAAASKG--LSYYVFVAYSYPLATLALLPLPLIFRNTTT----VVPSFKFSILSRIILL   83 (211)
Q Consensus        10 ~~~~~~l~~~~~~wg~~~i~~K~~~~~~--~~p~~l~~~R~~~A~l~l~~~~~~~~~~~~----~~~~~~~~~~~~l~~l   83 (211)
                      ..+.++.+.+.++|+.+.+..|...++.  .+.....++-..++.+.+....... +...    .....+.+++..++.+
T Consensus       142 ~~G~~l~l~aal~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~l~~l  220 (299)
T PRK11453        142 MLGFMLTLAAAFSWACGNIFNKKIMSHSTRPAVMSLVVWSALIPIIPFFVASLIL-DGSATMIHSLVTIDMTTILSLMYL  220 (299)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhcccCccchhHHHHHHHHHHHHHHHHHHHHh-cCchhhhhhhccCCHHHHHHHHHH
Confidence            4588899999999999999999865432  1223334444444444333333332 2211    0013456788889999


Q ss_pred             HHHH-HHHHHHHHHhhhccchhHHHHhhhhhhHHHHHHHHHhhhhhhcccccccccceehHHHHhhhHHHHhh
Q 028230           84 SFIG-VLSQIFGYTGIACSSPTLSSAISNLTPAFTFTLAVLFRMEKLALRTLSTQAKIIGTMVSISGALVVVL  155 (211)
Q Consensus        84 g~~g-~~~~~l~~~gl~~tsa~~as~i~~~~Pv~~~lla~l~~~E~~~~~~~~~~~~~~Gi~l~~~Gv~li~~  155 (211)
                      |+++ .+.+.+++.++++.+++.++.+..+.|++..++++++++|+++..      +++|.++.++|+.+...
T Consensus       221 ~i~~t~~~~~l~~~~l~~~~a~~~s~~~~l~Pv~a~~~~~l~lgE~~~~~------~~iG~~lI~~gv~l~~~  287 (299)
T PRK11453        221 AFVATIVGYGIWGTLLGRYETWRVAPLSLLVPVVGLASAALLLDERLTGL------QFLGAVLIMAGLYINVF  287 (299)
T ss_pred             HHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHhCCCccHH------HHHHHHHHHHHHHHHhc
Confidence            9999 899999999999999999999999999999999999999999875      68999999999987753

>COG5006 rhtA Threonine/homoserine efflux transporter [Amino acid transport and metabolism]

Probab=99.01  E-value=1.9e-08  Score=83.58  Aligned_cols=157  Identities=13%  Similarity=0.018  Sum_probs=117.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHhhccccccCCCCHHHHHHHHHHHHHHHHHH
Q 028230           12 LLSATVAVECTTVGLNTLFKAAASKGLSYYVFVAYSYPLATLALLPLPLIFRNTTTVVPSFKFSILSRIILLSFIGVLSQ   91 (211)
Q Consensus        12 ~~~~l~~~~~~wg~~~i~~K~~~~~~~~p~~l~~~R~~~A~l~l~~~~~~~~~~~~~~~~~~~~~~~~l~~lg~~g~~~~   91 (211)
                      +++.+..+.+.-=...-+.|..... ++|-..+.+|..+++++++++..-   ++   .+.+++++..+...|..-...|
T Consensus        13 p~~~ll~amvsiq~Gas~Ak~LFP~-vG~~g~t~lRl~~aaLIll~l~RP---wr---~r~~~~~~~~~~~yGvsLg~MN   85 (292)
T COG5006          13 PILALLVAMVSIQSGASFAKSLFPL-VGAAGVTALRLAIAALILLALFRP---WR---RRLSKPQRLALLAYGVSLGGMN   85 (292)
T ss_pred             cHHHHHHHHHHHHhhHHHHHHHccc-cChhhHHHHHHHHHHHHHHHHhhH---HH---hccChhhhHHHHHHHHHHHHHH
Confidence            4555555544333334456766664 999999999999999999887532   22   3457888999999998768889


Q ss_pred             HHHHHhhhccchhHHHHhhhhhhHHHHHHHHHhhhhhhcccccccccceehHHHHhhhHHHHhhhcCCcccCCCCCCCCC
Q 028230           92 IFGYTGIACSSPTLSSAISNLTPAFTFTLAVLFRMEKLALRTLSTQAKIIGTMVSISGALVVVLYKGPTIFLGTSPSSTH  171 (211)
Q Consensus        92 ~l~~~gl~~tsa~~as~i~~~~Pv~~~lla~l~~~E~~~~~~~~~~~~~~Gi~l~~~Gv~li~~~~g~~~~~~~~~~~~~  171 (211)
                      .+||.+++..+-+.+..+.++-|+.+.+++.   | |        ....+-+.+++.|..++. ..++            
T Consensus        86 l~FY~si~riPlGiAVAiEF~GPL~vA~~~s---R-r--------~~d~vwvaLAvlGi~lL~-p~~~------------  140 (292)
T COG5006          86 LLFYLSIERIPLGIAVAIEFTGPLAVALLSS---R-R--------LRDFVWVALAVLGIWLLL-PLGQ------------  140 (292)
T ss_pred             HHHHHHHHhccchhhhhhhhccHHHHHHHhc---c-c--------hhhHHHHHHHHHHHHhhe-eccC------------
Confidence            9999999999999999999999999877642   1 1        124566889999998885 2221            


Q ss_pred             ccCccccccCCCCCCchHHHHHHHHHHHHHHHHHHHHcCC
Q 028230          172 STNSLHWLMGSPSVSNWVTGGFLLAAQCFLLSIWSILLSY  211 (211)
Q Consensus       172 ~~~~~~~~~~~~~~~~~~~G~ll~l~a~~~~a~y~vlq~~  211 (211)
                                +..+.| ..|..+-+++..||+.|.+.-++
T Consensus       141 ----------~~~~lD-p~Gv~~Al~AG~~Wa~YIv~G~r  169 (292)
T COG5006         141 ----------SVWSLD-PVGVALALGAGACWALYIVLGQR  169 (292)
T ss_pred             ----------CcCcCC-HHHHHHHHHHhHHHHHHHHHcch
Confidence                      011222 47999999999999999998654

>TIGR03340 phn_DUF6 phosphonate utilization associated putative membrane protein

Probab=98.92  E-value=5.1e-09  Score=89.17  Aligned_cols=133  Identities=16%  Similarity=0.092  Sum_probs=93.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhCCCChH----HHHHHHHHHHHHHHHHHHHHhhccccccCCCCHHHHHHHHHHHH
Q 028230           10 ALLLSATVAVECTTVGLNTLFKAAASKGLSYY----VFVAYSYPLATLALLPLPLIFRNTTTVVPSFKFSILSRIILLSF   85 (211)
Q Consensus        10 ~~~~~~l~~~~~~wg~~~i~~K~~~~~~~~p~----~l~~~R~~~A~l~l~~~~~~~~~~~~~~~~~~~~~~~~l~~lg~   85 (211)
                      .++....+.++++|+.+.+..|...+ +.+|.    ....+.+.+.++.+.++.... +++.  .......+..+...+.
T Consensus       143 ~~g~~~~l~aal~~a~~~i~~k~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~--~~~~~~~~~~~~~~~~  218 (281)
T TIGR03340       143 RKAYAWALAAALGTAIYSLSDKAAAL-GVPAFYSALGYLGIGFLAMGWPFLLLYLKR-HGRS--MFPYARQILPSATLGG  218 (281)
T ss_pred             hhHHHHHHHHHHHHHHhhhhcccccc-chhcccccHHHHHHHHHHHHHHHHHHHHHH-hccc--hhhhHHHHHHHHHHHH
Confidence            34666778899999999999997533 35543    223333333322222322222 1111  1112233445566777


Q ss_pred             HH-HHHHHHHHHhhhccchhHHHHhhhhhhHHHHHHHHHhhhhhhcccccccccceehHHHHhhhHHH
Q 028230           86 IG-VLSQIFGYTGIACSSPTLSSAISNLTPAFTFTLAVLFRMEKLALRTLSTQAKIIGTMVSISGALV  152 (211)
Q Consensus        86 ~g-~~~~~l~~~gl~~tsa~~as~i~~~~Pv~~~lla~l~~~E~~~~~~~~~~~~~~Gi~l~~~Gv~l  152 (211)
                      +. .+.+.++++++++.+++.++.+.++.|++..++++++++|++++.      +++|.++.++|+.+
T Consensus       219 ~~s~l~~~l~~~al~~~~a~~~~~~~~l~pv~a~l~g~~~lgE~~~~~------~~iG~~lil~Gv~l  280 (281)
T TIGR03340       219 LMIGGAYALVLWAMTRLPVATVVALRNTSIVFAVVLGIWFLNERWYLT------RLMGVCIIVAGLVV  280 (281)
T ss_pred             HHHHHHHHHHHHHHhhCCceEEEeecccHHHHHHHHHHHHhCCCccHH------HHHHHHHHHHhHHh
Confidence            77 888999999999999999999999999999999999999999875      58999999999865

This family of hydrophobic proteins has some homology to families of integral membrane proteins such as (pfam00892) and may be a permease. It occurs in the vicinity of various types of operons for the catabolism of phosphonates in Vibrio, Pseudomonas, Polaromonas and Thiomicrospira.

>KOG2765 consensus Predicted membrane protein [Function unknown]

Probab=98.91  E-value=2.9e-09  Score=92.66  Aligned_cols=99  Identities=23%  Similarity=0.416  Sum_probs=84.2

Q ss_pred             HHHHHHHHHhhhccchhHHHHhhhhhhHHHHHHHHHhhhhhhcccccccccceehHHHHhhhHHHHhhhcCCcccCCCCC
Q 028230           88 VLSQIFGYTGIACSSPTLSSAISNLTPAFTFTLAVLFRMEKLALRTLSTQAKIIGTMVSISGALVVVLYKGPTIFLGTSP  167 (211)
Q Consensus        88 ~~~~~l~~~gl~~tsa~~as~i~~~~Pv~~~lla~l~~~E~~~~~~~~~~~~~~Gi~l~~~Gv~li~~~~g~~~~~~~~~  167 (211)
                      +..|+.++.++.+|+++..+++.++.-+||..++.++..||+++.      |.+++++++.|+++++..+..        
T Consensus       170 F~anl~~naALa~TsVAS~TilSStSs~FtL~la~if~~e~ft~s------Kllav~~si~GViiVt~~~s~--------  235 (416)
T KOG2765|consen  170 FLANLTSNAALAFTSVASTTILSSTSSFFTLFLAAIFPVERFTLS------KLLAVFVSIAGVIIVTMGDSK--------  235 (416)
T ss_pred             HHHHHHHHHHhhhhhhhhhhhhhhcchHHHHHHHHHcCcchhhHH------HHHHHHHhhccEEEEEecccc--------
Confidence            789999999999999999999999999999999999999999874      799999999999988743221        


Q ss_pred             CCCCccCccccccCCCCCCchHHHHHHHHHHHHHHHHHHHHcCC
Q 028230          168 SSTHSTNSLHWLMGSPSVSNWVTGGFLLAAQCFLLSIWSILLSY  211 (211)
Q Consensus       168 ~~~~~~~~~~~~~~~~~~~~~~~G~ll~l~a~~~~a~y~vlq~~  211 (211)
                          +   .    ++....+..+|+++.+.+++.||+|+++.||
T Consensus       236 ----~---~----~~~~a~~~llG~llaL~sA~~YavY~vllk~  268 (416)
T KOG2765|consen  236 ----Q---N----SDLPASRPLLGNLLALLSALLYAVYTVLLKR  268 (416)
T ss_pred             ----c---c----ccCCccchhHHHHHHHHHHHHHHHHHHHHHh
Confidence                0   0    0223445679999999999999999999875

>PF03151 TPT: Triose-phosphate Transporter family; InterPro: IPR004853 This family consists entirely of aligned regions from Drosophila melanogaster proteins

Probab=98.87  E-value=7.6e-08  Score=74.19  Aligned_cols=134  Identities=22%  Similarity=0.327  Sum_probs=109.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhC------CCChHHHHHHHHHHHHHHHHHHHHHhhccccccC---CC-------CHH
Q 028230           12 LLSATVAVECTTVGLNTLFKAAASK------GLSYYVFVAYSYPLATLALLPLPLIFRNTTTVVP---SF-------KFS   75 (211)
Q Consensus        12 ~~~~l~~~~~~wg~~~i~~K~~~~~------~~~p~~l~~~R~~~A~l~l~~~~~~~~~~~~~~~---~~-------~~~   75 (211)
                      +++..+.+.++-+...+..|..+++      ..+|.++..+-...+.++++|.+... |+....+   ..       ..+
T Consensus         1 G~~~~l~s~~~~al~~v~~~~~~~~~~~~~~~~~~~~l~~~~~~~s~~~l~~~~~~~-e~~~~~~~~~~~~~~~~~~~~~   79 (153)
T PF03151_consen    1 GFILALASSLFSALRNVLIKKLLKKVSSNSKKLNPLNLLYYNSPISFIILLPLAFLL-EGPQLSSFFSEIFGEELSSDPN   79 (153)
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHhcccccccCCCHHHHHHHHHHHHHHHHHHHHHHH-hhhhhhhHHHHhhhhhhcchHH
Confidence            3567788999999999999988865      79999999999999999999998876 5432100   00       123


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhhhccchhHHHHhhhhhhHHHHHHHHHhhhhhhcccccccccceehHHHHhhhHHH
Q 028230           76 ILSRIILLSFIGVLSQIFGYTGIACSSPTLSSAISNLTPAFTFTLAVLFRMEKLALRTLSTQAKIIGTMVSISGALV  152 (211)
Q Consensus        76 ~~~~l~~lg~~g~~~~~l~~~gl~~tsa~~as~i~~~~Pv~~~lla~l~~~E~~~~~~~~~~~~~~Gi~l~~~Gv~l  152 (211)
                      .+..++..|+++...+...+.-++++||...++..+.-.+.+.+++.++++|+++.+      ++.|+++++.|+++
T Consensus        80 ~~~~~~~~~~~~~~~n~~~f~~i~~tS~lt~~v~~~~K~~~~i~~s~~~f~~~~t~~------~~~G~~l~~~G~~~  150 (153)
T PF03151_consen   80 FIFLLILSGLLAFLYNLSSFLLIKLTSPLTYSVLGNVKRILVILLSVIFFGEPITPL------QIIGIVLALVGVLL  150 (153)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhhcChhHHHHHHHHHHHHHHHHHhhhcCCcCCHH------HHHHHHHHHHHHhe
Confidence            344455566666899999999999999999999999999999999999999999875      69999999999864

O49724 from SWISSPROT contains three repeats of this region. In other proteins, the aligned region is located towards the C terminus. The function of the aligned region is unknown.

>KOG4510 consensus Permease of the drug/metabolite transporter (DMT) superfamily [General function prediction only]

Probab=98.87  E-value=2.1e-10  Score=95.88  Aligned_cols=130  Identities=15%  Similarity=0.206  Sum_probs=95.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHhhccccccCCCCHHHHHHHHHHHHHHHHHH
Q 028230           12 LLSATVAVECTTVGLNTLFKAAASKGLSYYVFVAYSYPLATLALLPLPLIFRNTTTVVPSFKFSILSRIILLSFIGVLSQ   91 (211)
Q Consensus        12 ~~~~l~~~~~~wg~~~i~~K~~~~~~~~p~~l~~~R~~~A~l~l~~~~~~~~~~~~~~~~~~~~~~~~l~~lg~~g~~~~   91 (211)
                      +.+++.++ .++.+..++.+..++  .+|.+....|++.-.++..|..... ......|+ ..|  +++++-|+.|+...
T Consensus        39 gl~l~~vs-~ff~~~~vv~t~~~e--~~p~e~a~~r~l~~mlit~pcliy~-~~~v~gp~-g~R--~~LiLRg~mG~tgv  111 (346)
T KOG4510|consen   39 GLLLLTVS-YFFNSCMVVSTKVLE--NDPMELASFRLLVRMLITYPCLIYY-MQPVIGPE-GKR--KWLILRGFMGFTGV  111 (346)
T ss_pred             CceehhhH-HHHhhHHHhhhhhhc--cChhHhhhhhhhhehhhhheEEEEE-eeeeecCC-CcE--EEEEeehhhhhhHH
Confidence            34444555 666666666665553  7999999999887777777765543 21111122 222  24566777774344


Q ss_pred             HHHHHhhhccchhHHHHhhhhhhHHHHHHHHHhhhhhhcccccccccceehHHHHhhhHHHHh
Q 028230           92 IFGYTGIACSSPTLSSAISNLTPAFTFTLAVLFRMEKLALRTLSTQAKIIGTMVSISGALVVV  154 (211)
Q Consensus        92 ~l~~~gl~~tsa~~as~i~~~~Pv~~~lla~l~~~E~~~~~~~~~~~~~~Gi~l~~~Gv~li~  154 (211)
                      .+.|++++|.|-+.|++|....|++|.+++++++|||.++.      +.+|..+.+.||++++
T Consensus       112 mlmyya~~~mslaDA~vItFssPvft~ifaw~~LkE~~t~~------eaL~s~itl~GVVLIv  168 (346)
T KOG4510|consen  112 MLMYYALMYMSLADAVVITFSSPVFTIIFAWAFLKEPFTKF------EALGSLITLLGVVLIV  168 (346)
T ss_pred             HHHHHHHhhcchhheEEEEecChHHHHHHHHHHHcCCCcHH------HHHHHHHhhheEEEEe
Confidence            56678999999999999999999999999999999999865      5899999999999987

>PTZ00343 triose or hexose phosphate/phosphate translocator; Provisional

Probab=98.83  E-value=1.7e-07  Score=82.50  Aligned_cols=139  Identities=17%  Similarity=0.178  Sum_probs=103.2

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHhC------CCChHHHHHHHHHHHHHHHHHHHHHhhccccccC----------CC
Q 028230            9 EALLLSATVAVECTTVGLNTLFKAAASK------GLSYYVFVAYSYPLATLALLPLPLIFRNTTTVVP----------SF   72 (211)
Q Consensus         9 ~~~~~~~l~~~~~~wg~~~i~~K~~~~~------~~~p~~l~~~R~~~A~l~l~~~~~~~~~~~~~~~----------~~   72 (211)
                      +..+.++.++++++|+...+..|..+++      .+++..+..+-..+++++++|+.... |......          ..
T Consensus       192 ~~~G~~~~l~s~~~~a~~~i~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lp~~~~~-e~~~~~~~~~~~~~~~~~~  270 (350)
T PTZ00343        192 TWLAFWCAMLSNLGSSLRSIFAKKTMKNKSEIGENLTASNIYMLLTLIASLISLPLVLFF-EGKKWVPVWTNYTANMTNY  270 (350)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccCCHHHHHHHHHHHHHHHHHHHHHHH-hhHHHHHHHHHhhhccccc
Confidence            3568899999999999999999998753      26677777777889999999987654 3211000          00


Q ss_pred             CHHHHHHHHHHHHHH-HHHHHHHHHhhhccchhHHHHhhhhhhHHHHHHHHHhhhhhhcccccccccceehHHHHhhhHH
Q 028230           73 KFSILSRIILLSFIG-VLSQIFGYTGIACSSPTLSSAISNLTPAFTFTLAVLFRMEKLALRTLSTQAKIIGTMVSISGAL  151 (211)
Q Consensus        73 ~~~~~~~l~~lg~~g-~~~~~l~~~gl~~tsa~~as~i~~~~Pv~~~lla~l~~~E~~~~~~~~~~~~~~Gi~l~~~Gv~  151 (211)
                      ........++.+.+. ..++.+.|.+++.++|..+++..++-|+++.++++++++|++++.      +++|.++.+.|+.
T Consensus       271 ~~~~~l~~i~~s~l~~~l~n~~~f~~l~~~s~~t~sv~~~lk~V~~iv~s~l~~ge~lt~~------~~iG~~lii~Gv~  344 (350)
T PTZ00343        271 TKGIIIFKIFFSGVWYYLYNEVAFYCLGKVNQVTHAVANTLKRVVIIVSSIIIFQTQVTLL------GYLGMAVAILGAL  344 (350)
T ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHhhhhHHHhCCCCchH------hHHHHHHHHHHHH
Confidence            111111222223333 455556667999999999999999999999999999999999875      6999999999998


Q ss_pred             HHh
Q 028230          152 VVV  154 (211)
Q Consensus       152 li~  154 (211)
                      +..
T Consensus       345 lYs  347 (350)
T PTZ00343        345 LYS  347 (350)
T ss_pred             HHh
Confidence            764

>PF08449 UAA: UAA transporter family; InterPro: IPR013657 This family includes transporters with a specificity for UDP-N-acetylglucosamine []

Probab=98.78  E-value=3.6e-07  Score=78.76  Aligned_cols=158  Identities=15%  Similarity=0.120  Sum_probs=115.8

Q ss_pred             HHHHHHHHHh-CCCC--hHHHHHHHHHHHHHHHHHHHHHhhccccccCCCCHHHHHHHHHHHHHHHHHHHHHHHhhhccc
Q 028230           26 LNTLFKAAAS-KGLS--YYVFVAYSYPLATLALLPLPLIFRNTTTVVPSFKFSILSRIILLSFIGVLSQIFGYTGIACSS  102 (211)
Q Consensus        26 ~~i~~K~~~~-~~~~--p~~l~~~R~~~A~l~l~~~~~~~~~~~~~~~~~~~~~~~~l~~lg~~g~~~~~l~~~gl~~ts  102 (211)
                      +.+.-+.... .+..  |..+++..+....++-.+..... +++    +.++..++..+..+++-.+...+-+.+++|.|
T Consensus        15 ~g~~qE~i~~~~~~~~~~~~lt~~q~~~~~~~~~~~~~~~-~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~al~~i~   89 (303)
T PF08449_consen   15 YGILQEKIMTTPYGSPFPLFLTFVQFAFNALFSFILLSLF-KFP----KSRKIPLKKYAILSFLFFLASVLSNAALKYIS   89 (303)
T ss_pred             HHHHHHHHHcCCCCCcccHHHHHHHHHHHHHHHHHHHHhc-ccc----CCCcChHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence            3344444443 3344  88999999999888777665543 211    12233455667777766888899999999999


Q ss_pred             hhHHHHhhhhhhHHHHHHHHHhhhhhhcccccccccceehHHHHhhhHHHHhhhcCCcccCCCCCCCCCccCccccccCC
Q 028230          103 PTLSSAISNLTPAFTFTLAVLFRMEKLALRTLSTQAKIIGTMVSISGALVVVLYKGPTIFLGTSPSSTHSTNSLHWLMGS  182 (211)
Q Consensus       103 a~~as~i~~~~Pv~~~lla~l~~~E~~~~~~~~~~~~~~Gi~l~~~Gv~li~~~~g~~~~~~~~~~~~~~~~~~~~~~~~  182 (211)
                      ...-.++-++.|+.+++++.+++++|.+++      |+.++++..+|+++....+.+....            .     +
T Consensus        90 ~p~~~~~ks~~~i~vmi~~~l~~~k~y~~~------~~~~v~li~~Gv~~~~~~~~~~~~~------------~-----~  146 (303)
T PF08449_consen   90 YPTQIVFKSSKPIPVMILGVLILGKRYSRR------QYLSVLLITIGVAIFTLSDSSSSSS------------S-----N  146 (303)
T ss_pred             hHHHHHHhhhHHHHHHHHHHHhcCccccHH------HHHHHHHHHhhHheeeecccccccc------------c-----c
Confidence            999999999999999999999999999765      6899999999998887543321100            0     1


Q ss_pred             CCCCchHHHHHHHHHHHHHHHHHHHHcCC
Q 028230          183 PSVSNWVTGGFLLAAQCFLLSIWSILLSY  211 (211)
Q Consensus       183 ~~~~~~~~G~ll~l~a~~~~a~y~vlq~~  211 (211)
                      ....++..|+++++.+.++-+...+.|+|
T Consensus       147 ~~~~~~~~G~~ll~~sl~~~a~~~~~qe~  175 (303)
T PF08449_consen  147 SSSFSSALGIILLLLSLLLDAFTGVYQEK  175 (303)
T ss_pred             cccccchhHHHHHHHHHHHHHHHHHHHHH
Confidence            12233345999999999999999999975

; GO: 0055085 transmembrane transport

>COG0697 RhaT Permeases of the drug/metabolite transporter (DMT) superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / General function prediction only]

Probab=98.70  E-value=9.4e-07  Score=74.08  Aligned_cols=132  Identities=21%  Similarity=0.208  Sum_probs=105.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhCCCChHHHHH-HHHHHHHHHHHHHHHHhhccccccCCCCHHHHHHHHHHHHHH-
Q 028230           10 ALLLSATVAVECTTVGLNTLFKAAASKGLSYYVFVA-YSYPLATLALLPLPLIFRNTTTVVPSFKFSILSRIILLSFIG-   87 (211)
Q Consensus        10 ~~~~~~l~~~~~~wg~~~i~~K~~~~~~~~p~~l~~-~R~~~A~l~l~~~~~~~~~~~~~~~~~~~~~~~~l~~lg~~g-   87 (211)
                      ..+..+.+.+.++|+.+.+..|...  ..++..... +.+..+..+..+....  .+.   .....+++..+...|+++ 
T Consensus       153 ~~g~~~~l~a~~~~a~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~---~~~~~~~~~~~~~~g~~~~  225 (292)
T COG0697         153 LLGLLLALAAALLWALYTALVKRLS--RLGPVTLALLLQLLLALLLLLLFFLS--GFG---APILSRAWLLLLYLGVFST  225 (292)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhc--CCChHHHHHHHHHHHHHHHHHHHHhc--ccc---ccCCHHHHHHHHHHHHHHH
Confidence            5788899999999999999999765  367777777 4444333333333221  111   133567888899999999 


Q ss_pred             HHHHHHHHHhhhccchhHHHHhhhhhhHHHHHHHHHhhhhhhcccccccccceehHHHHhhhHHHHh
Q 028230           88 VLSQIFGYTGIACSSPTLSSAISNLTPAFTFTLAVLFRMEKLALRTLSTQAKIIGTMVSISGALVVV  154 (211)
Q Consensus        88 ~~~~~l~~~gl~~tsa~~as~i~~~~Pv~~~lla~l~~~E~~~~~~~~~~~~~~Gi~l~~~Gv~li~  154 (211)
                      ...+.+++.+++..+++.++.+..+.|++..++++++++|+++.+      +++|..+.+.|+.+..
T Consensus       226 ~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~l~~~e~~~~~------~~~G~~li~~g~~l~~  286 (292)
T COG0697         226 GLAYLLWYYALRLLGASLVALLSLLEPVFAALLGVLLLGEPLSPA------QLLGAALVVLGVLLAS  286 (292)
T ss_pred             HHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHhCCCCcHH------HHHHHHHHHHHHHHHh
Confidence            789999999999999999999999999999999999999999875      5899999999998875

>PRK15430 putative chloramphenical resistance permease RarD; Provisional

Probab=98.69  E-value=5.6e-07  Score=77.27  Aligned_cols=131  Identities=14%  Similarity=0.118  Sum_probs=88.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHhCC-CChHHHHHHHHHHHHHHHHHHHHHhhccccccCCCCHHHHHHHHHHHHHHHHHHHH
Q 028230           15 ATVAVECTTVGLNTLFKAAASKG-LSYYVFVAYSYPLATLALLPLPLIFRNTTTVVPSFKFSILSRIILLSFIGVLSQIF   93 (211)
Q Consensus        15 ~l~~~~~~wg~~~i~~K~~~~~~-~~p~~l~~~R~~~A~l~l~~~~~~~~~~~~~~~~~~~~~~~~l~~lg~~g~~~~~l   93 (211)
                      ..+.++++|+.+.+..|...++. .++.....+-..++...+.++...  ..... ...+...+..+...|+.+.+.+.+
T Consensus       153 ~~l~aa~~~a~~~i~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~-~~~~~~~~~~~~~~g~~t~i~~~~  229 (296)
T PRK15430        153 IALGLAFSFAFYGLVRKKIAVEAQTGMLIETMWLLPVAAIYLFAIADS--STSHM-GQNPMSLNLLLIAAGIVTTVPLLC  229 (296)
T ss_pred             HHHHHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHHHHHHHHHHccC--Ccccc-cCCcHHHHHHHHHHHHHHHHHHHH
Confidence            45678899999999998753221 223333444444444433322110  00000 111122233344455544788999


Q ss_pred             HHHhhhccchhHHHHhhhhhhHHHHHHHHHhhhhhhcccccccccceehHHHHhhhHHHHh
Q 028230           94 GYTGIACSSPTLSSAISNLTPAFTFTLAVLFRMEKLALRTLSTQAKIIGTMVSISGALVVV  154 (211)
Q Consensus        94 ~~~gl~~tsa~~as~i~~~~Pv~~~lla~l~~~E~~~~~~~~~~~~~~Gi~l~~~Gv~li~  154 (211)
                      ++.++++.+|+.++.+.++.|++..++++++++|++++.      +++|.++.++|+.++.
T Consensus       230 ~~~a~~~~~a~~~s~~~~l~Pv~a~~~g~l~l~E~~~~~------~~~G~~lI~~~~~v~~  284 (296)
T PRK15430        230 FTAAATRLRLSTLGFFQYIGPTLMFLLAVTFYGEKPGAD------KMVTFAFIWVALAIFV  284 (296)
T ss_pred             HHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHcCCCCHH------HHHHHHHHHHHHHHHH
Confidence            999999999999999999999999999999999999875      5899999989988776

>TIGR00776 RhaT RhaT L-rhamnose-proton symporter family protein

Probab=98.58  E-value=1.5e-06  Score=74.55  Aligned_cols=134  Identities=14%  Similarity=0.017  Sum_probs=98.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHH---HHHHHHHHHHHHhhccccccCCCCHHHHHHHHHHHHH
Q 028230           10 ALLLSATVAVECTTVGLNTLFKAAASKGLSYYVFVAYSYP---LATLALLPLPLIFRNTTTVVPSFKFSILSRIILLSFI   86 (211)
Q Consensus        10 ~~~~~~l~~~~~~wg~~~i~~K~~~~~~~~p~~l~~~R~~---~A~l~l~~~~~~~~~~~~~~~~~~~~~~~~l~~lg~~   86 (211)
                      .|+....+++.+.++.+.+..|..   +.||.+..+....   +++.++.+..  + +.  + +. ..+......+.|++
T Consensus       151 ~~Gi~~~l~sg~~y~~~~~~~~~~---~~~~~~~~~~~~~g~~~~~~~~~~~~--~-~~--~-~~-~~~~~~~~~~~Gi~  220 (290)
T TIGR00776       151 KKGILLLLMSTIGYLVYVVVAKAF---GVDGLSVLLPQAIGMVIGGIIFNLGH--I-LA--K-PL-KKYAILLNILPGLM  220 (290)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHc---CCCcceehhHHHHHHHHHHHHHHHHH--h-cc--c-ch-HHHHHHHHHHHHHH
Confidence            679999999999999999999964   3899998655554   4444433332  1 11  1 22 22333334446666


Q ss_pred             HHHHHHHHHHhhh-ccchhHHHHhhhhhhHHHHHHHHHhhhhhhcccccccccceehHHHHhhhHHHHhh
Q 028230           87 GVLSQIFGYTGIA-CSSPTLSSAISNLTPAFTFTLAVLFRMEKLALRTLSTQAKIIGTMVSISGALVVVL  155 (211)
Q Consensus        87 g~~~~~l~~~gl~-~tsa~~as~i~~~~Pv~~~lla~l~~~E~~~~~~~~~~~~~~Gi~l~~~Gv~li~~  155 (211)
                      -.+.+.+|+.+.+ +.+++.++++.+..|+...+.+++++||+.++++.  +.-.+|.++.+.|+.++..
T Consensus       221 ~~ia~~~y~~~~~~~~~~~~~~~ls~~~pvia~~~~v~~l~E~~~~~~~--~~~~iG~~lIi~~~~l~~~  288 (290)
T TIGR00776       221 WGIGNFFYLFSAQPKVGVATSFSLSQLGVIISTLGGILILGEKKTKREM--IAISVGIILIIIAANILGI  288 (290)
T ss_pred             HHHHHHHHHHHcccccchhhHHHHHHHHHHHHHHHHHHHhccCCCccee--ehhHHHHHHHHHHHHHHhc
Confidence            5677778999999 99999999999999999999999999999987641  0111899999999987753

These proteins are members of the L-Rhamnose Symporter (RhaT) Family (TC 2.A.7). This family includes two characterized members, both of which function as L-rhamnose:H+ symporters and have 10 GES predicted transmembrane domains.

>PRK15051 4-amino-4-deoxy-L-arabinose-phosphoundecaprenol flippase subunit ArnE; Provisional

Probab=98.41  E-value=1.5e-06  Score=64.28  Aligned_cols=68  Identities=15%  Similarity=0.135  Sum_probs=61.2

Q ss_pred             HHHHHHH-HHHHHHHHHhhhccchhHHHHhhhhhhHHHHHHHHHhhhhhhcccccccccceehHHHHhhhHHHHh
Q 028230           81 ILLSFIG-VLSQIFGYTGIACSSPTLSSAISNLTPAFTFTLAVLFRMEKLALRTLSTQAKIIGTMVSISGALVVV  154 (211)
Q Consensus        81 ~~lg~~g-~~~~~l~~~gl~~tsa~~as~i~~~~Pv~~~lla~l~~~E~~~~~~~~~~~~~~Gi~l~~~Gv~li~  154 (211)
                      ...++++ ...+.++..+++..|.+.|..+.++.|+++.++++++++||++++      |++|+.+.++|++++.
T Consensus        40 ~~~~~~~~~l~~~~~~~al~~iplg~Ay~~~~l~~v~~~~~~~l~f~E~ls~~------~~~Gi~lii~Gv~~i~  108 (111)
T PRK15051         40 LGLALACLGLAMVLWLLVLQNVPVGIAYPMLSLNFVWVTLAAVKLWHEPVSPR------HWCGVAFIIGGIVILG  108 (111)
T ss_pred             HHHHHHHHHHHHHHHHHHHhhCChHHHHHHHHHHHHHHHHHHHHHhCCCCCHH------HHHHHHHHHHHHHHHh
Confidence            3445577 889999999999999999999999999999999999999999876      5999999999998875

>PRK02971 4-amino-4-deoxy-L-arabinose-phosphoundecaprenol flippase subunit ArnF; Provisional

Probab=98.36  E-value=8.9e-06  Score=61.84  Aligned_cols=117  Identities=18%  Similarity=0.208  Sum_probs=88.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHhhccccccCCCCHHHHHHHHHHHHHH-HH
Q 028230           11 LLLSATVAVECTTVGLNTLFKAAASKGLSYYVFVAYSYPLATLALLPLPLIFRNTTTVVPSFKFSILSRIILLSFIG-VL   89 (211)
Q Consensus        11 ~~~~~l~~~~~~wg~~~i~~K~~~~~~~~p~~l~~~R~~~A~l~l~~~~~~~~~~~~~~~~~~~~~~~~l~~lg~~g-~~   89 (211)
                      ++|+.++.+.++=+...+..|.++++ .++.+.... . .      ......  .  . |       ...+.+|+.+ .+
T Consensus         2 ~~~~~i~~sv~l~~~gQl~~K~g~~~-~g~~~~~~~-~-~------~~~~~~--~--~-p-------~~~i~lgl~~~~l   60 (129)
T PRK02971          2 MGYLWGLASVLLASVAQLSLKWGMSR-LPLLSHAWD-F-I------AALLAF--G--L-A-------LRAVLLGLAGYAL   60 (129)
T ss_pred             ccHHHHHHHHHHHHHHHHHHHHHHhh-CCCccchhH-H-H------HHHHHH--h--c-c-------HHHHHHHHHHHHH
Confidence            36788888888888899999999875 544432221 1 1      110000  0  0 1       1246788888 99


Q ss_pred             HHHHHHHhhhccchhHHHHhhhhhhHHHHHHHHH--hhhhhhcccccccccceehHHHHhhhHHHHh
Q 028230           90 SQIFGYTGIACSSPTLSSAISNLTPAFTFTLAVL--FRMEKLALRTLSTQAKIIGTMVSISGALVVV  154 (211)
Q Consensus        90 ~~~l~~~gl~~tsa~~as~i~~~~Pv~~~lla~l--~~~E~~~~~~~~~~~~~~Gi~l~~~Gv~li~  154 (211)
                      .+.++..+++..+++.|.-+.+..|+++.+.++.  +++|+++++      |++|+++.++|+.++.
T Consensus        61 a~~~w~~aL~~~~ls~Ayp~~sl~~~~v~~~~~~~~~~~E~ls~~------~~iGi~lIi~GV~lv~  121 (129)
T PRK02971         61 SMLCWLKALRYLPLSRAYPLLSLSYALVYLAAMLLPWFNETFSLK------KTLGVACIMLGVWLIN  121 (129)
T ss_pred             HHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHHHHcCCCCCHH------HHHHHHHHHHHHHHhc
Confidence            9999999999999999999999999888888874  899999876      5999999999999886

>COG5006 rhtA Threonine/homoserine efflux transporter [Amino acid transport and metabolism]

Probab=98.28  E-value=1.4e-05  Score=66.71  Aligned_cols=134  Identities=15%  Similarity=0.104  Sum_probs=108.5

Q ss_pred             hHhHHHHHHHHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHhhccccccCCCCHHHHHHHHHHHHH
Q 028230            7 FREALLLSATVAVECTTVGLNTLFKAAASKGLSYYVFVAYSYPLATLALLPLPLIFRNTTTVVPSFKFSILSRIILLSFI   86 (211)
Q Consensus         7 ~~~~~~~~~l~~~~~~wg~~~i~~K~~~~~~~~p~~l~~~R~~~A~l~l~~~~~~~~~~~~~~~~~~~~~~~~l~~lg~~   86 (211)
                      .-|..+..+.+.+..||..+-+.+|.+-+. .+--.-+..-+.+|+++.+|+.... ....   -.+..-...-+..|++
T Consensus       144 ~lDp~Gv~~Al~AG~~Wa~YIv~G~r~g~~-~~g~~g~a~gm~vAaviv~Pig~~~-ag~~---l~~p~ll~laLgvavl  218 (292)
T COG5006         144 SLDPVGVALALGAGACWALYIVLGQRAGRA-EHGTAGVAVGMLVAALIVLPIGAAQ-AGPA---LFSPSLLPLALGVAVL  218 (292)
T ss_pred             cCCHHHHHHHHHHhHHHHHHHHHcchhccc-CCCchHHHHHHHHHHHHHhhhhhhh-cchh---hcChHHHHHHHHHHHH
Confidence            445667888899999999999999987543 5666777888999999999998754 2211   1233444555678889


Q ss_pred             H-HHHHHHHHHhhhccchhHHHHhhhhhhHHHHHHHHHhhhhhhcccccccccceehHHHHhhhHH
Q 028230           87 G-VLSQIFGYTGIACSSPTLSSAISNLTPAFTFTLAVLFRMEKLALRTLSTQAKIIGTMVSISGAL  151 (211)
Q Consensus        87 g-~~~~~l~~~gl~~tsa~~as~i~~~~Pv~~~lla~l~~~E~~~~~~~~~~~~~~Gi~l~~~Gv~  151 (211)
                      + .+.+.+...+++..++..-+++.++.|.+.++.++++++|+++.+      |+.|+...+++..
T Consensus       219 SSalPYsLEmiAL~rlp~~~F~~LlSLePa~aAl~G~i~L~e~ls~~------qwlaI~~ViaAsa  278 (292)
T COG5006         219 SSALPYSLEMIALRRLPARTFGTLLSLEPALAALSGLIFLGETLTLI------QWLAIAAVIAASA  278 (292)
T ss_pred             hcccchHHHHHHHhhCChhHHHHHHHhhHHHHHHHHHHHhcCCCCHH------HHHHHHHHHHHHh
Confidence            9 999999999999999999999999999999999999999999876      5777777766654

>PF04142 Nuc_sug_transp: Nucleotide-sugar transporter; InterPro: IPR007271 This family of membrane proteins transport nucleotide sugars from the cytoplasm into golgi vesicles

Probab=98.11  E-value=3.9e-05  Score=64.44  Aligned_cols=121  Identities=15%  Similarity=0.191  Sum_probs=89.0

Q ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHhhhccchhHHHHhhhhhhHHHHHHHHHhhhhhhcccccccccceehHHHHhhhHHH
Q 028230           73 KFSILSRIILLSFIGVLSQIFGYTGIACSSPTLSSAISNLTPAFTFTLAVLFRMEKLALRTLSTQAKIIGTMVSISGALV  152 (211)
Q Consensus        73 ~~~~~~~l~~lg~~g~~~~~l~~~gl~~tsa~~as~i~~~~Pv~~~lla~l~~~E~~~~~~~~~~~~~~Gi~l~~~Gv~l  152 (211)
                      ++||..++.+=+++-++.+.+.|.++++.+|+.=-++.++-.++|++++.+++|+|++++      ||+++.+-+.|+.+
T Consensus        13 ~~~~~~~~~vPA~lY~~qn~L~~~al~~ld~~t~qvl~q~kIl~TAl~s~~~L~r~ls~~------qW~aL~lL~~Gv~l   86 (244)
T PF04142_consen   13 SPKDTLKLAVPALLYAIQNNLQFVALSYLDPSTFQVLSQSKILFTALFSVLLLKRRLSRR------QWLALFLLVAGVVL   86 (244)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHhhHHHHHHHHHHHHHHcccchh------hHHHHHHHHHHHhe
Confidence            356777777777766889999999999999999999999999999999999999999875      58999999999988


Q ss_pred             HhhhcCCcccCCCCCCCCCccCccccccCCCCCCchHHHHHHHHHHHHHHHHHHHHc
Q 028230          153 VVLYKGPTIFLGTSPSSTHSTNSLHWLMGSPSVSNWVTGGFLLAAQCFLLSIWSILL  209 (211)
Q Consensus       153 i~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~ll~l~a~~~~a~y~vlq  209 (211)
                      +.....+... .+         +.+..+.+....+...|.++++.++++-++-.|..
T Consensus        87 v~~~~~~~~~-~~---------~~~~~~~~~~~~~~~~G~~~vl~~~~~S~~agVy~  133 (244)
T PF04142_consen   87 VQLSSSQSSD-NS---------SSSSVHHDASNQNPLLGLLAVLAAAFLSGFAGVYF  133 (244)
T ss_pred             eecCCccccc-cc---------cccccccccccchhHhHHHHHHHHHHHHHHHHHHH
Confidence            7532221100 00         00000001123445799999999999888766643

P78382 from SWISSPROT transports CMP-sialic acid, P78381 from SWISSPROT transports UDP-galactose and Q9Y2D2 from SWISSPROT transports UDP-GlcNAc. This family has some but not complete overlap with the UDP-galactose transporter family IPR004689 from INTERPRO.; GO: 0005351 sugar:hydrogen symporter activity, 0008643 carbohydrate transport, 0000139 Golgi membrane, 0016021 integral to membrane

>KOG2234 consensus Predicted UDP-galactose transporter [Carbohydrate transport and metabolism]

Probab=97.93  E-value=0.002  Score=56.29  Aligned_cols=174  Identities=14%  Similarity=0.127  Sum_probs=124.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhCC---CChHHHHHHHHHHHHHHHHHHHHHhhccc---cccCCC------CHHHHH
Q 028230           11 LLLSATVAVECTTVGLNTLFKAAASKG---LSYYVFVAYSYPLATLALLPLPLIFRNTT---TVVPSF------KFSILS   78 (211)
Q Consensus        11 ~~~~~l~~~~~~wg~~~i~~K~~~~~~---~~p~~l~~~R~~~A~l~l~~~~~~~~~~~---~~~~~~------~~~~~~   78 (211)
                      .-++.++...+.+++.....|+.-..+   +.|-+.++.--.+-.++...+.++. +|+   +....+      .++|..
T Consensus        15 ~k~~~l~~~t~~~~~l~l~l~ys~~~~~~~f~~tt~v~~~Ei~Kl~~c~~~~~~~-~~~~~~~~~~~l~~~i~~~~~~~l   93 (345)
T KOG2234|consen   15 MKYLSLIVLTAQNTALTLLLRYSRTREKPMFLPTTAVFLTEVIKLVFCLFLLLFE-ERKYAKKSLKSLSKEILAAPRETL   93 (345)
T ss_pred             HHHHHHHHHHHHHhhHHHHHHHHhcCCCCCcchhHHHHHHHHHHHHHHHHHHHHH-hhHHhhhhhhhcCHHHHhChHHHH
Confidence            456788888999999999999987655   6777888777777766655555443 221   110111      234555


Q ss_pred             HHHHHHHHHHHHHHHHHHhhhccchhHHHHhhhhhhHHHHHHHHHhhhhhhcccccccccceehHHHHhhhHHHHhhhcC
Q 028230           79 RIILLSFIGVLSQIFGYTGIACSSPTLSSAISNLTPAFTFTLAVLFRMEKLALRTLSTQAKIIGTMVSISGALVVVLYKG  158 (211)
Q Consensus        79 ~l~~lg~~g~~~~~l~~~gl~~tsa~~as~i~~~~Pv~~~lla~l~~~E~~~~~~~~~~~~~~Gi~l~~~Gv~li~~~~g  158 (211)
                      .+.+=+++-++.|.++|.++.+.+|+.-.+..++=-+-|+++..+++++|++++      ||..+++.++|+.++.....
T Consensus        94 k~~vPa~iYalqNnl~yval~~ldaatyqVt~qlKI~tTA~f~vl~L~rkLs~~------Qw~Al~lL~~Gv~~vQ~~~~  167 (345)
T KOG2234|consen   94 KVSVPALIYALQNNLQYVALSNLDAATYQVTYQLKILTTAIFSVLILRRKLSRL------QWMALVLLFAGVALVQLPSL  167 (345)
T ss_pred             HHHHHHHHHHHhhhHHHHHHhcCCchhhhhhhhHHHHHHHHHHHHHHhhhhhHH------HHHHHHHHHHHHHHHhccCC
Confidence            555555555777789999999999999999999999999999999999999876      58999999999998863222


Q ss_pred             CcccCCCCCCCCCccCccccccCCCCCCchHHHHHHHHHHHHHHHHHHH
Q 028230          159 PTIFLGTSPSSTHSTNSLHWLMGSPSVSNWVTGGFLLAAQCFLLSIWSI  207 (211)
Q Consensus       159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~ll~l~a~~~~a~y~v  207 (211)
                      +.-    +         +.   +.....+...|...++.+|+.-++-.|
T Consensus       168 ~~~----~---------a~---~~~~~~n~~~G~~avl~~c~~SgfAgv  200 (345)
T KOG2234|consen  168 SPT----G---------AK---SESSAQNPFLGLVAVLVACFLSGFAGV  200 (345)
T ss_pred             CCC----C---------cc---CCCcccchhhhHHHHHHHHHHHHHHHH
Confidence            110    0         00   012345567899999999988766443

>KOG2766 consensus Predicted membrane protein [Function unknown]

Probab=97.89  E-value=3.1e-07  Score=76.67  Aligned_cols=160  Identities=22%  Similarity=0.187  Sum_probs=110.8

Q ss_pred             HHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHhhccccccCCCCHHHHHHHHHHHHHHHHHHHHHHHhh
Q 028230           19 VECTTVGLNTLFKAAASKGLSYYVFVAYSYPLATLALLPLPLIFRNTTTVVPSFKFSILSRIILLSFIGVLSQIFGYTGI   98 (211)
Q Consensus        19 ~~~~wg~~~i~~K~~~~~~~~p~~l~~~R~~~A~l~l~~~~~~~~~~~~~~~~~~~~~~~~l~~lg~~g~~~~~l~~~gl   98 (211)
                      +-++-+.++.....+-..-=.|..=.|+-+..-+++-.|+..++  |+.     -+..|.+.+++++.-.-.|++...+.
T Consensus        27 SL~~t~~a~tss~la~k~iN~Pt~QtFl~Y~LLalVY~~~~~fR--~~~-----~~~~~~hYilla~~DVEaNy~vV~Ay   99 (336)
T KOG2766|consen   27 SLLITSTAFTSSELARKGINAPTSQTFLNYVLLALVYGPIMLFR--RKY-----IKAKWRHYILLAFVDVEANYFVVKAY   99 (336)
T ss_pred             HHHHHcchhhhHHHHhccCCCccHHHHHHHHHHHHHHhhHHHhh--hHH-----HHHHHHHhhheeEEeecccEEEeeeh
Confidence            33344444444443322112455667788888888888888775  321     12345567788876666677788999


Q ss_pred             hccchhHHHHhhhhhhHHHHHHHHHhhhhhhcccccccccceehHHHHhhhHHHHhhhcCCcccCCCCCCCCCccCcccc
Q 028230           99 ACSSPTLSSAISNLTPAFTFTLAVLFRMEKLALRTLSTQAKIIGTMVSISGALVVVLYKGPTIFLGTSPSSTHSTNSLHW  178 (211)
Q Consensus        99 ~~tsa~~as~i~~~~Pv~~~lla~l~~~E~~~~~~~~~~~~~~Gi~l~~~Gv~li~~~~g~~~~~~~~~~~~~~~~~~~~  178 (211)
                      |||+-+...++-.-.-..+.+++++++|.|-++      .|+.|+++|+.|+..+++++  .          |.++    
T Consensus       100 QyTsmtSi~lLDcwaip~v~~lsw~fLktrYrl------mki~gV~iCi~GvvmvV~sD--V----------~agd----  157 (336)
T KOG2766|consen  100 QYTSMTSIMLLDCWAIPCVLVLSWFFLKTRYRL------MKISGVVICIVGVVMVVFSD--V----------HAGD----  157 (336)
T ss_pred             hhcchHHHHHHHHhhhHHHHHHHHHHHHHHHhh------heeeeEEeEecceEEEEEee--e----------cccc----
Confidence            999999999887755556678899999988754      57999999999999887542  1          1100    


Q ss_pred             ccCCCCCCchHHHHHHHHHHHHHHHHHHHHcC
Q 028230          179 LMGSPSVSNWVTGGFLLAAQCFLLSIWSILLS  210 (211)
Q Consensus       179 ~~~~~~~~~~~~G~ll~l~a~~~~a~y~vlq~  210 (211)
                         ..++.|..+||+++++++-+||+-++.+.
T Consensus       158 ---~aggsnp~~GD~lvi~GATlYaVSNv~EE  186 (336)
T KOG2766|consen  158 ---RAGGSNPVKGDFLVIAGATLYAVSNVSEE  186 (336)
T ss_pred             ---ccCCCCCccCcEEEEecceeeeeccccHH
Confidence               22345667999999999999998877653

>PF06027 DUF914: Eukaryotic protein of unknown function (DUF914); InterPro: IPR009262 This family consists of several hypothetical proteins of unknown function

Probab=97.72  E-value=0.00035  Score=61.25  Aligned_cols=141  Identities=13%  Similarity=-0.007  Sum_probs=104.5

Q ss_pred             hHhHHHHHHHHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHhhccccccCCC--CHHHHHHHHHHH
Q 028230            7 FREALLLSATVAVECTTVGLNTLFKAAASKGLSYYVFVAYSYPLATLALLPLPLIFRNTTTVVPSF--KFSILSRIILLS   84 (211)
Q Consensus         7 ~~~~~~~~~l~~~~~~wg~~~i~~K~~~~~~~~p~~l~~~R~~~A~l~l~~~~~~~~~~~~~~~~~--~~~~~~~l~~lg   84 (211)
                      .++.++.+.++.+++++|.+.+.-|...++ .|+.++...=-+.+.++..+..... |++.. ...  +.+....++..+
T Consensus       164 ~~~i~GDll~l~~a~lya~~nV~~E~~v~~-~~~~~~lg~~Glfg~ii~~iq~~il-e~~~i-~~~~w~~~~~~~~v~~~  240 (334)
T PF06027_consen  164 SNPILGDLLALLGAILYAVSNVLEEKLVKK-APRVEFLGMLGLFGFIISGIQLAIL-ERSGI-ESIHWTSQVIGLLVGYA  240 (334)
T ss_pred             CccchhHHHHHHHHHHHHHHHHHHHHhccc-CCHHHHHHHHHHHHHHHHHHHHHhe-ehhhh-hccCCChhhHHHHHHHH
Confidence            346788999999999999999999998875 7888877766677777777776666 66543 222  333332222222


Q ss_pred             HHHHHHHHHHHHhhhccchhHHHHhhhhhhHHHHHHHHHhhhhhhcccccccccceehHHHHhhhHHHHhhh
Q 028230           85 FIGVLSQIFGYTGIACSSPTLSSAISNLTPAFTFTLAVLFRMEKLALRTLSTQAKIIGTMVSISGALVVVLY  156 (211)
Q Consensus        85 ~~g~~~~~l~~~gl~~tsa~~as~i~~~~Pv~~~lla~l~~~E~~~~~~~~~~~~~~Gi~l~~~Gv~li~~~  156 (211)
                      +..+....+.-..+++++|+...+=.-+..++..++..++.+|++++.      .++|.++.++|.++....
T Consensus       241 ~~lf~~y~l~p~~l~~ssAt~~nLsLLTsd~~ali~~i~~f~~~~~~l------y~~af~lIiiG~vvy~~~  306 (334)
T PF06027_consen  241 LCLFLFYSLVPIVLRMSSATFFNLSLLTSDFYALIIDIFFFGYKFSWL------YILAFALIIIGFVVYNLA  306 (334)
T ss_pred             HHHHHHHHHHHHHHHhCccceeehHHHHhhHHHHHHHHHhcCccccHH------HHHHHHHHHHHhheEEcc
Confidence            222556667778899999987777667889999999999999999874      588999999999877643

Some of the sequences in this family are annotated as putative membrane proteins.

>KOG1441 consensus Glucose-6-phosphate/phosphate and phosphoenolpyruvate/phosphate antiporter [Carbohydrate transport and metabolism; Amino acid transport and metabolism]

Probab=97.63  E-value=0.00025  Score=61.65  Aligned_cols=149  Identities=17%  Similarity=0.139  Sum_probs=110.1

Q ss_pred             HHHHHHHHh--CCCChHHHHHHHHHHHHHHHHHHHHHhhccccccCCC-CHHHHHHHHHHHHHHHHHHHHHHHhhhccch
Q 028230           27 NTLFKAAAS--KGLSYYVFVAYSYPLATLALLPLPLIFRNTTTVVPSF-KFSILSRIILLSFIGVLSQIFGYTGIACSSP  103 (211)
Q Consensus        27 ~i~~K~~~~--~~~~p~~l~~~R~~~A~l~l~~~~~~~~~~~~~~~~~-~~~~~~~l~~lg~~g~~~~~l~~~gl~~tsa  103 (211)
                      .+..|..++  +.--|..++..++..+.+.+...-... ..+ . ++. ++..+..++-+|++-++...+-+.++++.+.
T Consensus        33 ~~~nK~il~~~~f~~p~~lt~~~~~~~~l~~~v~~~l~-~~~-~-~~~~~~~~~~~llpl~~~~~~~~v~~n~Sl~~v~V  109 (316)
T KOG1441|consen   33 IILNKYILSKYGFPFPITLTMLHLFCGALALLVIKVLK-LVP-P-SKISSKLPLRTLLPLGLVFCISHVLGNVSLSYVPV  109 (316)
T ss_pred             EEeeHhhhccCCCCCccHHHHHHHHHHHHHHHHHHHhc-CCC-C-CccccccchHHHHHHHHHHHHHHHhcchhhhccch
Confidence            345688877  445688888888888777665554332 221 1 222 3345667788888778888889999999999


Q ss_pred             hHHHHhhhhhhHHHHHHHHHhhhhhhcccccccccceehHHHHhhhHHHHhhhcCCcccCCCCCCCCCccCccccccCCC
Q 028230          104 TLSSAISNLTPAFTFTLAVLFRMEKLALRTLSTQAKIIGTMVSISGALVVVLYKGPTIFLGTSPSSTHSTNSLHWLMGSP  183 (211)
Q Consensus       104 ~~as~i~~~~Pv~~~lla~l~~~E~~~~~~~~~~~~~~Gi~l~~~Gv~li~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~  183 (211)
                      +..-.+=++.|+++.++++++.+|+.+++.      ...++....|+.+-+..                          .
T Consensus       110 sF~q~iKa~~P~~tvl~~~~~~~~~~s~~~------~lsL~piv~GV~ias~~--------------------------e  157 (316)
T KOG1441|consen  110 SFYQTIKALMPPFTVLLSVLLLGKTYSSMT------YLSLLPIVFGVAIASVT--------------------------E  157 (316)
T ss_pred             hHHHHHHhhcchhHHHHHHHHhCCCCcceE------EEEEEEeeeeEEEeeec--------------------------c
Confidence            999999999999999999999999997653      55666667777654321                          1


Q ss_pred             CCCchHHHHHHHHHHHHHHHHHHHHcCC
Q 028230          184 SVSNWVTGGFLLAAQCFLLSIWSILLSY  211 (211)
Q Consensus       184 ~~~~~~~G~ll~l~a~~~~a~y~vlq~~  211 (211)
                      .+.| ..|-...+.+.++.+...|++++
T Consensus       158 ~~fn-~~G~i~a~~s~~~~al~~I~~~~  184 (316)
T KOG1441|consen  158 LSFN-LFGFISAMISNLAFALRNILSKK  184 (316)
T ss_pred             cccc-HHHHHHHHHHHHHHHHHHHHHHH
Confidence            1233 47999999999999999998864

>PF08449 UAA: UAA transporter family; InterPro: IPR013657 This family includes transporters with a specificity for UDP-N-acetylglucosamine []

Probab=97.62  E-value=0.0018  Score=55.73  Aligned_cols=139  Identities=17%  Similarity=0.155  Sum_probs=108.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHh-CCCChHHHHHHHHHHHHHHHHHHHHH--hhccccccC--CCCHHHHHHHHHHHHH
Q 028230           12 LLSATVAVECTTVGLNTLFKAAAS-KGLSYYVFVAYSYPLATLALLPLPLI--FRNTTTVVP--SFKFSILSRIILLSFI   86 (211)
Q Consensus        12 ~~~~l~~~~~~wg~~~i~~K~~~~-~~~~p~~l~~~R~~~A~l~l~~~~~~--~~~~~~~~~--~~~~~~~~~l~~lg~~   86 (211)
                      +++.++++.++-|...+..+..++ ++.+|.+..++-...+.++.++....  .++-.+..+  ......+..++...+.
T Consensus       155 G~~ll~~sl~~~a~~~~~qe~~~~~~~~~~~~~mfy~n~~~~~~~~~~~~~l~~~~~~~~~~f~~~~p~~~~~l~~~s~~  234 (303)
T PF08449_consen  155 GIILLLLSLLLDAFTGVYQEKLFKKYGKSPWELMFYTNLFSLPFLLILLFLLPTGEFRSAIRFISAHPSVLLYLLLFSLT  234 (303)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHHHHHhhHhhHHHHHHHHhHHHHHHHHHHHHH
Confidence            889999999999999999988774 57999999999999998888777666  211111000  0012334556666666


Q ss_pred             HHHHHHHHHHhhhccchhHHHHhhhhhhHHHHHHHHHhhhhhhcccccccccceehHHHHhhhHHHHhhh
Q 028230           87 GVLSQIFGYTGIACSSPTLSSAISNLTPAFTFTLAVLFRMEKLALRTLSTQAKIIGTMVSISGALVVVLY  156 (211)
Q Consensus        87 g~~~~~l~~~gl~~tsa~~as~i~~~~Pv~~~lla~l~~~E~~~~~~~~~~~~~~Gi~l~~~Gv~li~~~  156 (211)
                      +...+.+.+.-.+..+|...+++..+--+++.+++.+++++++++.      +++|+++.+.|..+-...
T Consensus       235 ~~~g~~~i~~~~~~~~al~~t~v~t~Rk~~sillS~~~f~~~~~~~------~~~G~~lv~~g~~~~~~~  298 (303)
T PF08449_consen  235 GALGQFFIFYLIKKFSALTTTIVTTLRKFLSILLSVIIFGHPLSPL------QWIGIVLVFAGIFLYSYA  298 (303)
T ss_pred             HHHHHHHHHHHHHhcCchhhhhHHHHHHHHHHHHHHHhcCCcCChH------HHHHHHHhHHHHHHHHHh
Confidence            6666777777889999999999999999999999999999999875      689999999999877643

; GO: 0055085 transmembrane transport

>TIGR00688 rarD rarD protein

Probab=97.61  E-value=0.002  Score=53.92  Aligned_cols=106  Identities=11%  Similarity=0.060  Sum_probs=68.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHhhccccccCCCCHHHHHHHHHHHHHHHHHHHHH
Q 028230           15 ATVAVECTTVGLNTLFKAAASKGLSYYVFVAYSYPLATLALLPLPLIFRNTTTVVPSFKFSILSRIILLSFIGVLSQIFG   94 (211)
Q Consensus        15 ~l~~~~~~wg~~~i~~K~~~~~~~~p~~l~~~R~~~A~l~l~~~~~~~~~~~~~~~~~~~~~~~~l~~lg~~g~~~~~l~   94 (211)
                      ..+.++++|+.+.+..|...+.  ++......-.. ...+..+..... ...........++|..++..|+++.+.+.++
T Consensus       150 ~~l~aa~~~a~~~i~~~~~~~~--~~~~~~~~~~~-~~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~g~~t~i~~~l~  225 (256)
T TIGR00688       150 EALVLAFSFTAYGLIRKALKNT--DLAGFCLETLS-LMPVAIYYLLQT-DFATVQQTNPFPIWLLLVLAGLITGTPLLAF  225 (256)
T ss_pred             HHHHHHHHHHHHHHHHhhcCCC--CcchHHHHHHH-HHHHHHHHHHHh-ccCcccccCchhHHHHHHHHHHHHHHHHHHH
Confidence            4567899999999999975432  33332222211 111111111111 1100001112357888888887667889999


Q ss_pred             HHhhhccchhHHHHhhhhhhHHHHHHHHHh
Q 028230           95 YTGIACSSPTLSSAISNLTPAFTFTLAVLF  124 (211)
Q Consensus        95 ~~gl~~tsa~~as~i~~~~Pv~~~lla~l~  124 (211)
                      +.|+++.+|+.++.+.++.|+++.+++.+.
T Consensus       226 ~~a~~~~~a~~~s~~~yl~Pv~~~~~~~~~  255 (256)
T TIGR00688       226 VIAANRLPLNLLGLLQYIGPTIMMLCVSFL  255 (256)
T ss_pred             HHHHHcCChHHHHHHHHHHHHHHHHHHHHh
Confidence            999999999999999999999999998653

This uncharacterized protein is predicted to have many membrane-spanning domains.

>KOG4314 consensus Predicted carbohydrate/phosphate translocator [General function prediction only]

Probab=97.49  E-value=0.0001  Score=59.74  Aligned_cols=92  Identities=18%  Similarity=0.303  Sum_probs=77.6

Q ss_pred             HHHHHHHHHhhhccchhHHHHhhhhhhHHHHHHHHHhhhhhhcccccccccceehHHHHhhhHHHHhhhcCCcccCCCCC
Q 028230           88 VLSQIFGYTGIACSSPTLSSAISNLTPAFTFTLAVLFRMEKLALRTLSTQAKIIGTMVSISGALVVVLYKGPTIFLGTSP  167 (211)
Q Consensus        88 ~~~~~l~~~gl~~tsa~~as~i~~~~Pv~~~lla~l~~~E~~~~~~~~~~~~~~Gi~l~~~Gv~li~~~~g~~~~~~~~~  167 (211)
                      ++.+++|..+++..||+.++.+..++-.|+.+++++.+++|+.--      |++..++++.|++.+. |..         
T Consensus        64 t~aNY~Yl~AL~~is~s~asai~~CNaAFVfiLa~IVL~D~~~~~------kIlaailAI~GiVmia-y~D---------  127 (290)
T KOG4314|consen   64 TGANYLYLLALKKISASDASAIFACNAAFVFILAIIVLGDRFMGF------KILAAILAIGGIVMIA-YAD---------  127 (290)
T ss_pred             ecCCcHHHHHHHhcChhhhHHHHHhhHHHHHHHHHHHhccchhhh------hHHHHHHHhCcEEEEE-ecc---------
Confidence            567899999999999999999999999999999999999998653      6899999999998775 321         


Q ss_pred             CCCCccCccccccCCCCCCchHHHHHHHHHHHHHHHHHHHHcC
Q 028230          168 SSTHSTNSLHWLMGSPSVSNWVTGGFLLAAQCFLLSIWSILLS  210 (211)
Q Consensus       168 ~~~~~~~~~~~~~~~~~~~~~~~G~ll~l~a~~~~a~y~vlq~  210 (211)
                                     ....+...|..+.++|+..-++|-|+-|
T Consensus       128 ---------------N~~a~e~iGi~~AV~SA~~aAlYKV~FK  155 (290)
T KOG4314|consen  128 ---------------NEHADEIIGIACAVGSAFMAALYKVLFK  155 (290)
T ss_pred             ---------------chhhhhhhhHHHHHHHHHHHHHHHHHHH
Confidence                           1223346899999999999999988644

>KOG3912 consensus Predicted integral membrane protein [General function prediction only]

Probab=97.26  E-value=0.0039  Score=53.17  Aligned_cols=161  Identities=16%  Similarity=0.140  Sum_probs=103.4

Q ss_pred             HHHHHHHHHHHh---CCCC----hHHHHHHHHHHHHHHHHHHHHHhhcccccc---C-------CC--CHHHHHHHHHHH
Q 028230           24 VGLNTLFKAAAS---KGLS----YYVFVAYSYPLATLALLPLPLIFRNTTTVV---P-------SF--KFSILSRIILLS   84 (211)
Q Consensus        24 g~~~i~~K~~~~---~~~~----p~~l~~~R~~~A~l~l~~~~~~~~~~~~~~---~-------~~--~~~~~~~l~~lg   84 (211)
                      +.|.+..|++=+   +|-|    |+..+..-|+.=.+++..+.+.+ .|...+   .       +-  +.+..  ++..=
T Consensus        16 s~Ntl~aKwadsi~~eg~pgfqhpvlqal~mFlGEflCl~vf~lir-~~sn~~g~~s~~~~ilsq~~~pf~p~--lfl~P   92 (372)
T KOG3912|consen   16 SFNTLVAKWADSIQAEGSPGFQHPVLQALLMFLGEFLCLAVFKLIR-LRSNGQGVSSDLDSILSQDSSPFNPV--LFLPP   92 (372)
T ss_pred             cHHHHHHHHHHhhhhhCCCccccHHHHHHHHHHHHHHHHHHHHHHH-HhhcCCCcccccccccccccCCCCcc--eecCh
Confidence            467788898642   2444    56555555666667777776655 332210   0       00  11111  11222


Q ss_pred             HHH-HHHHHHHHHhhhccchhHHHHhhhhhhHHHHHHHHHhhhhhhcccccccccceehHHHHhhhHHHHhhhcCCcccC
Q 028230           85 FIG-VLSQIFGYTGIACSSPTLSSAISNLTPAFTFTLAVLFRMEKLALRTLSTQAKIIGTMVSISGALVVVLYKGPTIFL  163 (211)
Q Consensus        85 ~~g-~~~~~l~~~gl~~tsa~~as~i~~~~Pv~~~lla~l~~~E~~~~~~~~~~~~~~Gi~l~~~Gv~li~~~~g~~~~~  163 (211)
                      .+. .....+.|.|+.+|+|+.--.+-...-+|+.+++.-+++.+++.+      ||+|+....+|.+.+...+  .   
T Consensus        93 al~Di~gsslm~vgL~lTsASsfQMlRGaviIFvglfst~~Ln~ti~~~------qWl~i~fv~lGlviVg~~d--~---  161 (372)
T KOG3912|consen   93 ALCDIAGSSLMYVGLNLTSASSFQMLRGAVIIFVGLFSTMFLNRTITGR------QWLGILFVSLGLVIVGSLD--V---  161 (372)
T ss_pred             HHHHHhhhHHHHHHHHHhhHHHHHHhhcchhhhhHHHHHHHHhcccchh------hHHHHHHHHhhhheeeeee--c---
Confidence            334 556778889999999998877777888999999999999998765      6899999999998774221  1   


Q ss_pred             CCCCCCCCccCccccccCCCCCCchHHHHHHHHHHHHHHHHHHHHcC
Q 028230          164 GTSPSSTHSTNSLHWLMGSPSVSNWVTGGFLLAAQCFLLSIWSILLS  210 (211)
Q Consensus       164 ~~~~~~~~~~~~~~~~~~~~~~~~~~~G~ll~l~a~~~~a~y~vlq~  210 (211)
                             |..+.+     ...-.+.+.||++++.+-+.-|.-.+.-.
T Consensus       162 -------~~~~~p-----~~d~s~iitGdllIiiaqiivaiQ~v~Ee  196 (372)
T KOG3912|consen  162 -------HLVTDP-----YTDYSSIITGDLLIIIAQIIVAIQMVCEE  196 (372)
T ss_pred             -------ccccCC-----ccccccchhhhHHHHHHHHHHHHHHHHHH
Confidence                   000011     11123457899999999998888776543

>KOG1441 consensus Glucose-6-phosphate/phosphate and phosphoenolpyruvate/phosphate antiporter [Carbohydrate transport and metabolism; Amino acid transport and metabolism]

Probab=97.20  E-value=0.0013  Score=57.28  Aligned_cols=140  Identities=14%  Similarity=0.169  Sum_probs=107.6

Q ss_pred             HhHHHHHHHHHHHHHHHHHHHHHHHHH---hCCCChHHHHHHHHHHHHHHHH-HHHHHhhccccc---cC-CCCHHHHHH
Q 028230            8 REALLLSATVAVECTTVGLNTLFKAAA---SKGLSYYVFVAYSYPLATLALL-PLPLIFRNTTTV---VP-SFKFSILSR   79 (211)
Q Consensus         8 ~~~~~~~~l~~~~~~wg~~~i~~K~~~---~~~~~p~~l~~~R~~~A~l~l~-~~~~~~~~~~~~---~~-~~~~~~~~~   79 (211)
                      -++.+.+....+.+..+...+..|..+   ++.++++.+..+---++..+++ |+.... ++...   .. ..+.. ...
T Consensus       160 fn~~G~i~a~~s~~~~al~~I~~~~ll~~~~~~~~~~~ll~y~ap~s~~~Ll~P~~~~~-~~~~~~~~~~~~~~~~-~~~  237 (316)
T KOG1441|consen  160 FNLFGFISAMISNLAFALRNILSKKLLTSKGESLNSMNLLYYTAPISLIFLLIPFLDYV-EGNKFVGFLTAPWFVT-FLI  237 (316)
T ss_pred             ccHHHHHHHHHHHHHHHHHHHHHHHhhhccccccCchHHHHHhhhHHHHHHhcchHhhh-cccceeeeeccccchh-hHH
Confidence            357789999999999999999999988   3469999999999999999998 987765 43221   01 12223 334


Q ss_pred             HHHHHHHHHHHHHHHHHhhhccchhHHHHhhhhhhHHHHHHHHHhhhhhhcccccccccceehHHHHhhhHHHHhh
Q 028230           80 IILLSFIGVLSQIFGYTGIACSSPTLSSAISNLTPAFTFTLAVLFRMEKLALRTLSTQAKIIGTMVSISGALVVVL  155 (211)
Q Consensus        80 l~~lg~~g~~~~~l~~~gl~~tsa~~as~i~~~~Pv~~~lla~l~~~E~~~~~~~~~~~~~~Gi~l~~~Gv~li~~  155 (211)
                      ..+.+.+.+..|...|.-+..|||-+=++....==.++...++++++|++++.      +..|..+++.|+.+-.-
T Consensus       238 ~~~~sv~~f~~Nls~f~~ig~tSalT~~V~g~~K~~~vi~~s~~iF~~pvt~~------n~~G~~iai~Gv~~Y~~  307 (316)
T KOG1441|consen  238 LLLNSVLAFLLNLSAFLVIGRTSALTYSVAGHMKRIVVIVVSWLIFGNPVTFL------NALGYAIAILGVFLYSR  307 (316)
T ss_pred             HHHHHHHHHHHHHHHHHHHcccCchhhhhhccceEEEEEEeEeeeecCCCchh------hHHHHHHHHHHHHHHHH
Confidence            44455444888899999999999998887777666666677888999988775      58999999999987753

>PF06800 Sugar_transport: Sugar transport protein; InterPro: IPR010651 This is a family of bacterial sugar transporters approximately 300 residues long

Probab=97.13  E-value=0.0044  Score=52.71  Aligned_cols=132  Identities=15%  Similarity=0.089  Sum_probs=88.8

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHhhccccccCCCCHHHHHHHHHHHHHHH
Q 028230            9 EALLLSATVAVECTTVGLNTLFKAAASKGLSYYVFVAYSYPLATLALLPLPLIFRNTTTVVPSFKFSILSRIILLSFIGV   88 (211)
Q Consensus         9 ~~~~~~~l~~~~~~wg~~~i~~K~~~~~~~~p~~l~~~R~~~A~l~l~~~~~~~~~~~~~~~~~~~~~~~~l~~lg~~g~   88 (211)
                      ..|+++.++++.+.+..+.++.|..   +++|.+..+=. .++-++-..+.... .++   +..+++.++ -.+-|++=.
T Consensus       136 ~~kgi~~Ll~stigy~~Y~~~~~~~---~~~~~~~~lPq-aiGm~i~a~i~~~~-~~~---~~~~k~~~~-nil~G~~w~  206 (269)
T PF06800_consen  136 MKKGILALLISTIGYWIYSVIPKAF---HVSGWSAFLPQ-AIGMLIGAFIFNLF-SKK---PFFEKKSWK-NILTGLIWG  206 (269)
T ss_pred             hhhHHHHHHHHHHHHHHHHHHHHhc---CCChhHhHHHH-HHHHHHHHHHHhhc-ccc---cccccchHH-hhHHHHHHH
Confidence            4678999999999999999998863   47887766644 33322222221111 111   111223332 344555547


Q ss_pred             HHHHHHHHhhhccchhHHHHhhhhhhHHHHHHHHHhhhhhhcccccccccceehHHHHhhhHH
Q 028230           89 LSQIFGYTGIACSSPTLSSAISNLTPAFTFTLAVLFRMEKLALRTLSTQAKIIGTMVSISGAL  151 (211)
Q Consensus        89 ~~~~l~~~gl~~tsa~~as~i~~~~Pv~~~lla~l~~~E~~~~~~~~~~~~~~Gi~l~~~Gv~  151 (211)
                      +.+.+++.+.+....+.+=.+..+.+++..+-+.+++||+=++|+.  ...++|.++.++|++
T Consensus       207 ignl~~~is~~~~G~a~af~lSQ~~vvIStlgGI~il~E~Kt~ke~--~~~~~G~~Liv~G~i  267 (269)
T PF06800_consen  207 IGNLFYLISAQKNGVATAFTLSQLGVVISTLGGIFILKEKKTKKEM--IYTLIGLILIVIGAI  267 (269)
T ss_pred             HHHHHHHHhHHhccchhhhhHHhHHHHHHHhhhheEEEecCchhhH--HHHHHHHHHHHHhhh
Confidence            7788899999999999999999999999999999999999776652  123456666666654

Members include glucose uptake proteins [], ribose transport proteins, and several putative and hypothetical membrane proteins probably involved in sugar transport across bacterial membranes.; GO: 0015144 carbohydrate transmembrane transporter activity, 0034219 carbohydrate transmembrane transport, 0016021 integral to membrane

>PRK13499 rhamnose-proton symporter; Provisional

Probab=97.03  E-value=0.018  Score=50.72  Aligned_cols=175  Identities=15%  Similarity=0.066  Sum_probs=105.8

Q ss_pred             HhHHHHHHHHHHHHHHHHHHHHHHHHHhCCCC--hHHH--HHHHHHHHHHHHHHHHH--Hhhccccc--cCCCCHHHHHH
Q 028230            8 REALLLSATVAVECTTVGLNTLFKAAASKGLS--YYVF--VAYSYPLATLALLPLPL--IFRNTTTV--VPSFKFSILSR   79 (211)
Q Consensus         8 ~~~~~~~~l~~~~~~wg~~~i~~K~~~~~~~~--p~~l--~~~R~~~A~l~l~~~~~--~~~~~~~~--~~~~~~~~~~~   79 (211)
                      +-.-+++..+++.++||++++-.|.. +. -+  -+..  .++.+     ++.|+..  .. .+.-.  ....+.+.+..
T Consensus         4 ~~~~G~~~~~i~~~~~GS~~~p~K~~-k~-w~wE~~W~v~gi~~w-----l~~~~~~g~~~-~~~f~~~~~~~~~~~~~~   75 (345)
T PRK13499          4 AIILGIIWHLIGGASSGSFYAPFKKV-KK-WSWETMWSVGGIFSW-----LILPWLIAALL-LPDFWAYYSSFSGSTLLP   75 (345)
T ss_pred             hhHHHHHHHHHHHHHhhccccccccc-CC-CchhHHHHHHHHHHH-----HHHHHHHHHHH-hhhHHHHHHhcCHHHHHH
Confidence            34568999999999999999999973 32 22  1111  11111     2222111  11 11000  01223444444


Q ss_pred             HHHHHHHHHHHHHHHHHhhhccchhHHHHh-hhhhhHHHHHHHHHhhhhhh---cccccccccceehHHHHhhhHHHHhh
Q 028230           80 IILLSFIGVLSQIFGYTGIACSSPTLSSAI-SNLTPAFTFTLAVLFRMEKL---ALRTLSTQAKIIGTMVSISGALVVVL  155 (211)
Q Consensus        80 l~~lg~~g~~~~~l~~~gl~~tsa~~as~i-~~~~Pv~~~lla~l~~~E~~---~~~~~~~~~~~~Gi~l~~~Gv~li~~  155 (211)
                      -++.|.+=.+.|..++.++++...+.+--+ +.+.=+...++..++++|=-   +-++  +..-.+|+++.++|+.+...
T Consensus        76 ~~l~G~~W~iG~i~~~~s~~~iGvS~~~pIs~Gl~lv~gtL~~~i~~gew~~~~~t~~--g~~~~~gv~liliGi~l~s~  153 (345)
T PRK13499         76 VFLFGALWGIGGITYGLTMRYLGMSLGIGIAIGITLIVGTLMPPIINGNFDVLLATNG--GRMTLLGVLVALIGVAIVGR  153 (345)
T ss_pred             HHHHHHHHHhhhhhHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHccccccccccch--HHHHHHHHHHHHHHHHHHHH
Confidence            444444447889999999999999987644 45778888888888888643   2211  23357799999999988874


Q ss_pred             hcCCcccCCCCCCCCCccCccccccCCCCCCchHHHHHHHHHHHHHHHHHH
Q 028230          156 YKGPTIFLGTSPSSTHSTNSLHWLMGSPSVSNWVTGGFLLAAQCFLLSIWS  206 (211)
Q Consensus       156 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~ll~l~a~~~~a~y~  206 (211)
                      .........          ..    ......+..+|..+.+.+.+.+++|.
T Consensus       154 Ag~~k~~~~----------~~----~~~~~~~~~KGi~ialisgi~~~~f~  190 (345)
T PRK13499        154 AGQLKERKM----------GI----KKAEEFNLKKGLILAVMSGIFSACFS  190 (345)
T ss_pred             hhhhccccc----------cc----ccccccchHhHHHHHHHHHHHHHHHH
Confidence            211110000          00    00123456799999999999999998

>PF06800 Sugar_transport: Sugar transport protein; InterPro: IPR010651 This is a family of bacterial sugar transporters approximately 300 residues long

Probab=97.00  E-value=0.013  Score=49.95  Aligned_cols=115  Identities=18%  Similarity=0.094  Sum_probs=79.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhhccchhHHHHhhh-hhhHHHHHHHHHhhhhhhcccccccccceehHHHHhhhHHHH
Q 028230           75 SILSRIILLSFIGVLSQIFGYTGIACSSPTLSSAISN-LTPAFTFTLAVLFRMEKLALRTLSTQAKIIGTMVSISGALVV  153 (211)
Q Consensus        75 ~~~~~l~~lg~~g~~~~~l~~~gl~~tsa~~as~i~~-~~Pv~~~lla~l~~~E~~~~~~~~~~~~~~Gi~l~~~Gv~li  153 (211)
                      +.+..-++.|++=.+.|..++.+.++...+.+-=+.. ..=+.+.+.++++++|--+.+++  ..-..++++.++|+.+-
T Consensus        43 ~~~~~~~lsG~~W~iGq~~qf~s~~~~GVS~tmPiStg~QLvg~sl~gv~~fgEW~~~~~~--~~G~~Al~liiiGv~lt  120 (269)
T PF06800_consen   43 TSFIVAFLSGAFWAIGQIGQFKSFKKIGVSKTMPISTGLQLVGTSLIGVLFFGEWTTTTQK--IIGFLALVLIIIGVILT  120 (269)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhcceeeeccchhHHHHHHHHHHHhhcCCCCCcchH--HHHHHHHHHHHHHHHHh
Confidence            5555555555544889999999999999998876654 55566788899999997664431  11234667778888776


Q ss_pred             hhhcCCcccCCCCCCCCCccCccccccCCCCCCchHHHHHHHHHHHHHHHHHHHHcC
Q 028230          154 VLYKGPTIFLGTSPSSTHSTNSLHWLMGSPSVSNWVTGGFLLAAQCFLLSIWSILLS  210 (211)
Q Consensus       154 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~ll~l~a~~~~a~y~vlq~  210 (211)
                      +..+++..              .     .....+...|.+.++.+.+.|..|.++.+
T Consensus       121 s~~~~~~~--------------~-----~~~~~~~~kgi~~Ll~stigy~~Y~~~~~  158 (269)
T PF06800_consen  121 SYQDKKSD--------------K-----SSSKSNMKKGILALLISTIGYWIYSVIPK  158 (269)
T ss_pred             cccccccc--------------c-----cccccchhhHHHHHHHHHHHHHHHHHHHH
Confidence            53322110              0     11234566899999999999999998865

Members include glucose uptake proteins [], ribose transport proteins, and several putative and hypothetical membrane proteins probably involved in sugar transport across bacterial membranes.; GO: 0015144 carbohydrate transmembrane transporter activity, 0034219 carbohydrate transmembrane transport, 0016021 integral to membrane

>PRK10650 multidrug efflux system protein MdtI; Provisional

Probab=96.80  E-value=0.02  Score=42.14  Aligned_cols=63  Identities=10%  Similarity=0.120  Sum_probs=53.5

Q ss_pred             HHH-HHHHHHHHHhhhccchhHH-HHhhhhhhHHHHHHHHHhhhhhhcccccccccceehHHHHhhhHHHH
Q 028230           85 FIG-VLSQIFGYTGIACSSPTLS-SAISNLTPAFTFTLAVLFRMEKLALRTLSTQAKIIGTMVSISGALVV  153 (211)
Q Consensus        85 ~~g-~~~~~l~~~gl~~tsa~~a-s~i~~~~Pv~~~lla~l~~~E~~~~~~~~~~~~~~Gi~l~~~Gv~li  153 (211)
                      +.+ ...++++..++++.|.+.| ++.....-+.+.+.+.++++|++++.      |++|+.+.+.|++.+
T Consensus        42 ~~~~~~sf~~Ls~al~~lpvgvAYAvW~GiG~v~~~~ig~~~f~e~~~~~------~~~gi~lIi~GVi~l  106 (109)
T PRK10650         42 LAAVLAAFSALSQAVKGIDLSVAYALWGGFGIAATLAAGWILFGQRLNRK------GWIGLVLLLAGMVMI  106 (109)
T ss_pred             HHHHHHHHHHHHHHHhhCchHHHHHHHHHHHHHHHHHHHHHHcCCCCCHH------HHHHHHHHHHHHHHh
Confidence            445 7778888999999999988 55566788888999999999999875      689999999999876

>PRK10452 multidrug efflux system protein MdtJ; Provisional

Probab=96.77  E-value=0.0052  Score=46.06  Aligned_cols=68  Identities=24%  Similarity=0.277  Sum_probs=56.6

Q ss_pred             HHHHHH-HHHHHHHHHhhhccchhHHHHh-hhhhhHHHHHHHHHhhhhhhcccccccccceehHHHHhhhHHHHhh
Q 028230           82 LLSFIG-VLSQIFGYTGIACSSPTLSSAI-SNLTPAFTFTLAVLFRMEKLALRTLSTQAKIIGTMVSISGALVVVL  155 (211)
Q Consensus        82 ~lg~~g-~~~~~l~~~gl~~tsa~~as~i-~~~~Pv~~~lla~l~~~E~~~~~~~~~~~~~~Gi~l~~~Gv~li~~  155 (211)
                      +..+.+ ...++++..++++.+.+.|=.+ ....-+.+.+++.++++|+++++      |++|+.+.++|++.+-.
T Consensus        34 ~~~i~~~~~sf~~ls~al~~lplsiAYavw~GiG~v~~~~ig~~~f~E~~s~~------~~~gi~lIi~GVi~l~l  103 (120)
T PRK10452         34 ILMLVMISLSYIFLSFAVKKIALGVAYALWEGIGILFITLFSVLLFDESLSLM------KIAGLTTLVAGIVLIKS  103 (120)
T ss_pred             HHHHHHHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHHHHhCCCCCHH------HHHHHHHHHHHHHHhhc
Confidence            345556 7888899999999999988444 56888889999999999999875      69999999999988853

>COG2076 EmrE Membrane transporters of cations and cationic drugs [Inorganic ion transport and metabolism]

Probab=96.73  E-value=0.0074  Score=44.14  Aligned_cols=66  Identities=20%  Similarity=0.219  Sum_probs=56.5

Q ss_pred             HHHHH-HHHHHHHHHhhhccchhHH-HHhhhhhhHHHHHHHHHhhhhhhcccccccccceehHHHHhhhHHHHh
Q 028230           83 LSFIG-VLSQIFGYTGIACSSPTLS-SAISNLTPAFTFTLAVLFRMEKLALRTLSTQAKIIGTMVSISGALVVV  154 (211)
Q Consensus        83 lg~~g-~~~~~l~~~gl~~tsa~~a-s~i~~~~Pv~~~lla~l~~~E~~~~~~~~~~~~~~Gi~l~~~Gv~li~  154 (211)
                      +.+.+ ...+.++-.++++.+.+.| ++....--+.+.+.++++++|++++.      |++|+.+.++|++.+-
T Consensus        35 l~~v~~~~sf~~Ls~alk~ipvgvAYAiW~GiG~v~~~l~g~~~f~E~l~~~------~~~gl~LiiaGvi~Lk  102 (106)
T COG2076          35 LTIVGYGLSFYLLSLALKTIPLGVAYAIWTGIGIVGTALVGVLLFGESLSLI------KLLGLALILAGVIGLK  102 (106)
T ss_pred             HHHHHHHHHHHHHHHHHhhCchHHHHHHHHHHHHHHHHHHHHHhcCCcCCHH------HHHHHHHHHHHHHHhh
Confidence            34556 7788889999999999988 56677888899999999999999875      6999999999998774

>KOG1444 consensus Nucleotide-sugar transporter VRG4/SQV-7 [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]

Probab=96.67  E-value=0.14  Score=44.29  Aligned_cols=164  Identities=13%  Similarity=0.109  Sum_probs=107.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhC-CCChHHH-HHHHHHHHHHHHHHHHHHhhccccccCCCCHHHHHHHHHHHHHHHH
Q 028230           12 LLSATVAVECTTVGLNTLFKAAASK-GLSYYVF-VAYSYPLATLALLPLPLIFRNTTTVVPSFKFSILSRIILLSFIGVL   89 (211)
Q Consensus        12 ~~~~l~~~~~~wg~~~i~~K~~~~~-~~~p~~l-~~~R~~~A~l~l~~~~~~~~~~~~~~~~~~~~~~~~l~~lg~~g~~   89 (211)
                      +....+.-++.-....++-|.++.. ++|...+ ..++.+...+.+...- +.  |-...+++++++.+..+-..++-.+
T Consensus        13 ~l~sa~~Y~~sS~lm~vvNK~vls~y~f~~~l~l~~~Q~l~s~~~v~~lk-~~--~lv~~~~l~~~~~kk~~P~~~lf~~   89 (314)
T KOG1444|consen   13 PLLSALFYCLSSILMTVVNKIVLSSYNFPMGLLLMLLQSLASVLVVLVLK-RL--GLVNFRPLDLRTAKKWFPVSLLFVG   89 (314)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHH-Hh--ceeecCCcChHHHHHHccHHHHHHH
Confidence            3444444455555666778888865 3443322 2377776666554442 21  2111245667777777766666556


Q ss_pred             HHHHHHHhhhccchhHHHHhhhhhhHHHHHHHHHhhhhhhcccccccccceehHHHHhhhHHHHhhhcCCcccCCCCCCC
Q 028230           90 SQIFGYTGIACSSPTLSSAISNLTPAFTFTLAVLFRMEKLALRTLSTQAKIIGTMVSISGALVVVLYKGPTIFLGTSPSS  169 (211)
Q Consensus        90 ~~~l~~~gl~~tsa~~as~i~~~~Pv~~~lla~l~~~E~~~~~~~~~~~~~~Gi~l~~~Gv~li~~~~g~~~~~~~~~~~  169 (211)
                      ....--.+++|.+...-+++=+.+|+++++...++++.+++.+      .+..+....+|.......             
T Consensus        90 ~i~t~~~slk~lnVpm~tv~kn~tii~~ai~E~lf~~~~~~~~------v~~Sv~~m~~~s~~~~~~-------------  150 (314)
T KOG1444|consen   90 MLFTGSKSLKYLNVPMFTVFKNLTIILTAIGEVLFFGKRPSNK------VWASVFAMIIGSVAAAFT-------------  150 (314)
T ss_pred             HHHHccccccccCchHHHHHhhchHHHHHHhHHhhcCcCchhh------HHHHHHHHHHHHHhhccc-------------
Confidence            6666668899999999999999999999999999999766543      355566666665444321             


Q ss_pred             CCccCccccccCCCCCCchHHHHHHHHHHHHHHHHHHHHcCC
Q 028230          170 THSTNSLHWLMGSPSVSNWVTGGFLLAAQCFLLSIWSILLSY  211 (211)
Q Consensus       170 ~~~~~~~~~~~~~~~~~~~~~G~ll~l~a~~~~a~y~vlq~~  211 (211)
                                   ..+.+ ..|..+++.++++=+.|.+.-||
T Consensus       151 -------------d~sf~-~~gY~w~~~n~~~~a~~~v~~kk  178 (314)
T KOG1444|consen  151 -------------DLSFN-LRGYSWALANCLTTAAFVVYVKK  178 (314)
T ss_pred             -------------cceec-chhHHHHHHHHHHHHHHHHHHHH
Confidence                         11122 35899999999999999887653

>PRK09541 emrE multidrug efflux protein; Reviewed

Probab=96.65  E-value=0.011  Score=43.73  Aligned_cols=67  Identities=24%  Similarity=0.187  Sum_probs=54.4

Q ss_pred             HHHHH-HHHHHHHHHhhhccchhHHH-HhhhhhhHHHHHHHHHhhhhhhcccccccccceehHHHHhhhHHHHhh
Q 028230           83 LSFIG-VLSQIFGYTGIACSSPTLSS-AISNLTPAFTFTLAVLFRMEKLALRTLSTQAKIIGTMVSISGALVVVL  155 (211)
Q Consensus        83 lg~~g-~~~~~l~~~gl~~tsa~~as-~i~~~~Pv~~~lla~l~~~E~~~~~~~~~~~~~~Gi~l~~~Gv~li~~  155 (211)
                      ..+.+ .+.+.++..+++..|.+.|= +.....-+.+.++++++++|++++.      |++|+.+.++|++.+..
T Consensus        35 ~~~~~~~~sf~~l~~al~~ipl~iAYavw~GlG~v~~~l~g~~~f~e~~~~~------~~~gi~lIi~GVi~l~l  103 (110)
T PRK09541         35 GTIICYCASFWLLAQTLAYIPTGIAYAIWSGVGIVLISLLSWGFFGQRLDLP------AIIGMMLICAGVLVINL  103 (110)
T ss_pred             HHHHHHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHHHHhCCCCCHH------HHHHHHHHHHHHHHHhc
Confidence            34556 77777888889998888874 4455777788899999999999875      69999999999998853

>COG2962 RarD Predicted permeases [General function prediction only]

Probab=96.59  E-value=0.1  Score=44.64  Aligned_cols=127  Identities=12%  Similarity=0.043  Sum_probs=89.0

Q ss_pred             HHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHhhcccc-ccCCCCHHHHHHHHHHHHHHHHHHHHHHH
Q 028230           18 AVECTTVGLNTLFKAAASKGLSYYVFVAYSYPLATLALLPLPLIFRNTTT-VVPSFKFSILSRIILLSFIGVLSQIFGYT   96 (211)
Q Consensus        18 ~~~~~wg~~~i~~K~~~~~~~~p~~l~~~R~~~A~l~l~~~~~~~~~~~~-~~~~~~~~~~~~l~~lg~~g~~~~~l~~~   96 (211)
                      ..++-||.++..=|..   ++|+.+=.+.-...-..+-+.+.++. +-.. ....-+.+++..+...|...++.-.+|..
T Consensus       155 ~la~sf~~Ygl~RK~~---~v~a~~g~~lE~l~l~p~al~yl~~l-~~~~~~~~~~~~~~~~LLv~aG~vTavpL~lf~~  230 (293)
T COG2962         155 ALALSFGLYGLLRKKL---KVDALTGLTLETLLLLPVALIYLLFL-ADSGQFLQQNANSLWLLLVLAGLVTAVPLLLFAA  230 (293)
T ss_pred             HHHHHHHHHHHHHHhc---CCchHHhHHHHHHHHhHHHHHHHHHH-hcCchhhhcCCchHHHHHHHhhHHHHHHHHHHHH
Confidence            3456677777766642   36776655555444433333333333 2111 00112346777788888888899999999


Q ss_pred             hhhccchhHHHHhhhhhhHHHHHHHHHhhhhhhcccccccccceehHHHHhhhHHHHh
Q 028230           97 GIACSSPTLSSAISNLTPAFTFTLAVLFRMEKLALRTLSTQAKIIGTMVSISGALVVV  154 (211)
Q Consensus        97 gl~~tsa~~as~i~~~~Pv~~~lla~l~~~E~~~~~~~~~~~~~~Gi~l~~~Gv~li~  154 (211)
                      |-+..+-+.-+++++..|.+.++++.++++|+++.-      |.+.-++.-+|.++..
T Consensus       231 aa~~lpls~~G~lqYi~Ptl~fllav~i~~E~~~~~------~~~~F~~IW~aL~l~~  282 (293)
T COG2962         231 AAKRLPLSTLGFLQYIEPTLMFLLAVLIFGEPFDSD------QLVTFAFIWLALALFS  282 (293)
T ss_pred             HHhcCCHHHHHHHHHHHHHHHHHHHHHHcCCCCCHH------HHHHHHHHHHHHHHHH
Confidence            999999999999999999999999999999999753      5777777777776665

>KOG4510 consensus Permease of the drug/metabolite transporter (DMT) superfamily [General function prediction only]

Probab=96.59  E-value=0.0019  Score=54.70  Aligned_cols=134  Identities=13%  Similarity=0.101  Sum_probs=93.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHhhccccccCCCCHHHHHHHHHHHHHHHHH
Q 028230           11 LLLSATVAVECTTVGLNTLFKAAASKGLSYYVFVAYSYPLATLALLPLPLIFRNTTTVVPSFKFSILSRIILLSFIGVLS   90 (211)
Q Consensus        11 ~~~~~l~~~~~~wg~~~i~~K~~~~~~~~p~~l~~~R~~~A~l~l~~~~~~~~~~~~~~~~~~~~~~~~l~~lg~~g~~~   90 (211)
                      ++..+.+.+.++-+..+++.|+.-+ ..+.+.-..+=-+++.+.-+.....- ..-.+ |. ..+|+..+..+|++|++.
T Consensus       191 ~gt~aai~s~lf~asvyIilR~iGk-~~h~~msvsyf~~i~lV~s~I~~~~i-g~~~l-P~-cgkdr~l~~~lGvfgfig  266 (346)
T KOG4510|consen  191 PGTVAAISSVLFGASVYIILRYIGK-NAHAIMSVSYFSLITLVVSLIGCASI-GAVQL-PH-CGKDRWLFVNLGVFGFIG  266 (346)
T ss_pred             CchHHHHHhHhhhhhHHHHHHHhhc-cccEEEEehHHHHHHHHHHHHHHhhc-cceec-Cc-cccceEEEEEehhhhhHH
Confidence            3456667777777788888887533 35555444444444433332222211 22222 33 567888888999999999


Q ss_pred             HHHHHHhhhccchhHHHHhhhhhhHHHHHHHHHhhhhhhcccccccccceehHHHHhhhHHHHh
Q 028230           91 QIFGYTGIACSSPTLSSAISNLTPAFTFTLAVLFRMEKLALRTLSTQAKIIGTMVSISGALVVV  154 (211)
Q Consensus        91 ~~l~~~gl~~tsa~~as~i~~~~Pv~~~lla~l~~~E~~~~~~~~~~~~~~Gi~l~~~Gv~li~  154 (211)
                      |++...|+|.--|+-.+++.++.-++.++.-.++++|-+|++.      +.|.++.+.-.+..+
T Consensus       267 QIllTm~lQiErAGpvaim~~~dvvfAf~wqv~ff~~~Pt~ws------~~Ga~~vvsS~v~~a  324 (346)
T KOG4510|consen  267 QILLTMGLQIERAGPVAIMTYTDVVFAFFWQVLFFGHWPTIWS------WVGAVMVVSSTVWVA  324 (346)
T ss_pred             HHHHHHHhhhhccCCeehhhHHHHHHHHHHHHHHhcCCChHHH------hhceeeeehhHHHHH
Confidence            9999999999999999999999999999999999999998875      555555544444443

>PF05653 Mg_trans_NIPA: Magnesium transporter NIPA; InterPro: IPR008521 This family consists of several eukaryotic proteins of unknown function

Probab=96.47  E-value=0.021  Score=49.39  Aligned_cols=118  Identities=19%  Similarity=0.236  Sum_probs=82.3

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHhhccccccCCCCHHHHHHHHHHHHHH-
Q 028230            9 EALLLSATVAVECTTVGLNTLFKAAASKGLSYYVFVAYSYPLATLALLPLPLIFRNTTTVVPSFKFSILSRIILLSFIG-   87 (211)
Q Consensus         9 ~~~~~~~l~~~~~~wg~~~i~~K~~~~~~~~p~~l~~~R~~~A~l~l~~~~~~~~~~~~~~~~~~~~~~~~l~~lg~~g-   87 (211)
                      ...+....+.++++-+......|.+..+ .+.   ...|                ++ .. ++...++  .....|+.- 
T Consensus         5 ~~iGv~lav~ss~~~~~g~~lqk~~~~r-~~~---~~~~----------------~~-~~-~~~~l~~--~~W~~G~~~~   60 (300)
T PF05653_consen    5 FYIGVLLAVVSSIFIAVGFNLQKKSHLR-LPR---GSLR----------------AG-SG-GRSYLRR--PLWWIGLLLM   60 (300)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHH-hhc---cccc----------------cc-ch-hhHHHhh--HHHHHHHHHH
Confidence            3457777777888888888888876542 111   0000                00 00 0000111  233456666 


Q ss_pred             HHHHHHHHHhhhccchhHHHHhhhhhhHHHHHHHHHhhhhhhcccccccccceehHHHHhhhHHHHhhh
Q 028230           88 VLSQIFGYTGIACSSPTLSSAISNLTPAFTFTLAVLFRMEKLALRTLSTQAKIIGTMVSISGALVVVLY  156 (211)
Q Consensus        88 ~~~~~l~~~gl~~tsa~~as~i~~~~Pv~~~lla~l~~~E~~~~~~~~~~~~~~Gi~l~~~Gv~li~~~  156 (211)
                      .+.+.+.+.++.+.|++..+-+....=++.++++..+++||++++      .+.|+++++.|..+++..
T Consensus        61 ~~g~~~~~~Al~~ap~slv~Plg~~~lv~~~~~a~~~l~e~~~~~------~~~G~~l~i~G~~liv~~  123 (300)
T PF05653_consen   61 VLGEILNFVALGFAPASLVAPLGALSLVFNAVLARFFLGEKLTRR------DIVGCALIILGSVLIVIF  123 (300)
T ss_pred             hcchHHHHHHHHhhhHHHHHHHHhhhhhhHHHHhHHHhcccchHh------HHhhHHHHHhhheeeEEe
Confidence            667778889999999999999999999999999999999999875      589999999999877643

>PF10639 UPF0546: Uncharacterised protein family UPF0546; InterPro: IPR018908 This family of proteins has no known function

Probab=96.43  E-value=0.0063  Score=45.12  Aligned_cols=109  Identities=17%  Similarity=0.152  Sum_probs=73.5

Q ss_pred             HHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHhhccccccCCCCHHHHHHHHHHHHHH-HHHHHHHH
Q 028230           17 VAVECTTVGLNTLFKAAASKGLSYYVFVAYSYPLATLALLPLPLIFRNTTTVVPSFKFSILSRIILLSFIG-VLSQIFGY   95 (211)
Q Consensus        17 ~~~~~~wg~~~i~~K~~~~~~~~p~~l~~~R~~~A~l~l~~~~~~~~~~~~~~~~~~~~~~~~l~~lg~~g-~~~~~l~~   95 (211)
                      +++.++||.+.++.|.+.+ +.++..-.. |..--...     ..             +++.+  ...+.- -.....|+
T Consensus         2 l~Vg~~WG~Tnpfik~g~~-~~~~~~~~~-~~~~~~~~-----Ll-------------~n~~y--~ipf~lNq~GSv~f~   59 (113)
T PF10639_consen    2 LLVGILWGCTNPFIKRGSS-GLEKVKASL-QLLQEIKF-----LL-------------LNPKY--IIPFLLNQSGSVLFF   59 (113)
T ss_pred             eeehHHhcCchHHHHHHHh-hcCCccchH-HHHHHHHH-----HH-------------HhHHH--HHHHHHHHHHHHHHH
Confidence            4578999999999999875 355554431 31111111     01             11111  234444 56677899


Q ss_pred             HhhhccchhHHHHhh-hhhhHHHHHHHHHhhhhhhcccccccccceehHHHHhhhHHHH
Q 028230           96 TGIACSSPTLSSAIS-NLTPAFTFTLAVLFRMEKLALRTLSTQAKIIGTMVSISGALVV  153 (211)
Q Consensus        96 ~gl~~tsa~~as~i~-~~~Pv~~~lla~l~~~E~~~~~~~~~~~~~~Gi~l~~~Gv~li  153 (211)
                      ..+..++-+.+.-+. ++.=++|++.++++.+|..+++      .++|+.+.+.|+.+.
T Consensus        60 ~~L~~~dlSlavPi~Nsl~fvfT~l~g~~lge~~~~~~------~~~G~~Li~~Gv~Lc  112 (113)
T PF10639_consen   60 LLLGSADLSLAVPIANSLAFVFTALTGWLLGEEVISRR------TWLGMALILAGVALC  112 (113)
T ss_pred             HHHhcCCceeeehHHhHHHHHHHHHHHHHhcCcccchh------HHHHHHHHHcCeeee
Confidence            999999999998885 6788888888877766665543      589999999998653

Many members are annotated as potential transmembrane proteins.

>PRK11431 multidrug efflux system protein; Provisional

Probab=96.43  E-value=0.012  Score=43.06  Aligned_cols=64  Identities=5%  Similarity=0.046  Sum_probs=54.8

Q ss_pred             HHH-HHHHHHHHHhhhccchhHH-HHhhhhhhHHHHHHHHHhhhhhhcccccccccceehHHHHhhhHHHHh
Q 028230           85 FIG-VLSQIFGYTGIACSSPTLS-SAISNLTPAFTFTLAVLFRMEKLALRTLSTQAKIIGTMVSISGALVVV  154 (211)
Q Consensus        85 ~~g-~~~~~l~~~gl~~tsa~~a-s~i~~~~Pv~~~lla~l~~~E~~~~~~~~~~~~~~Gi~l~~~Gv~li~  154 (211)
                      +.+ ...++++..+++..|.+.| ++....--+.+.+++.++++|++|+.      |++|+.+.+.|++.+.
T Consensus        36 i~~~~~sf~~Ls~al~~ip~gvaYAvW~GiG~v~~~lig~~~f~e~~~~~------~~~gi~lIi~GVv~l~  101 (105)
T PRK11431         36 VTAMIVSMALLAWAMKSLPVGTAYAVWTGIGAVGAAITGIVLLGESASPA------RLLSLALIVAGIIGLK  101 (105)
T ss_pred             HHHHHHHHHHHHHHHhhCCcHhHHHHHHHHHHHHHHHHHHHHhCCCCCHH------HHHHHHHHHHHHHhhh
Confidence            556 7888889999999999988 55566888889999999999999875      6899999999998774

>PRK13499 rhamnose-proton symporter; Provisional

Probab=96.36  E-value=0.15  Score=44.98  Aligned_cols=146  Identities=16%  Similarity=0.002  Sum_probs=83.7

Q ss_pred             hHHHHHHHHHHHHHHHHHH-------HHHHHHHhCCCChHHHHHHHHH---HHHHHHHHH-HHHhhcc-cccc----CCC
Q 028230            9 EALLLSATVAVECTTVGLN-------TLFKAAASKGLSYYVFVAYSYP---LATLALLPL-PLIFRNT-TTVV----PSF   72 (211)
Q Consensus         9 ~~~~~~~l~~~~~~wg~~~-------i~~K~~~~~~~~p~~l~~~R~~---~A~l~l~~~-~~~~~~~-~~~~----~~~   72 (211)
                      ..|+.+.++++.+..+..+       +.-+.+.+.+.+|.....-.+.   ++..+.-++ ..+.-+| ++..    ...
T Consensus       172 ~~KGi~ialisgi~~~~f~~~~~~~~~~~~~a~~~g~~~~~~~lp~~~~~~~G~~~~n~~~~~~~~~k~~~~~~~~~~~~  251 (345)
T PRK13499        172 LKKGLILAVMSGIFSACFSFAMDAGKPMHEAAAALGVDPLYAALPSYVVIMGGGAITNLGFCFIRLAKNKDLSLKADFSL  251 (345)
T ss_pred             hHhHHHHHHHHHHHHHHHHHHHhhccchhhhhhhcCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCcccchhccc
Confidence            4678899999999888888       6666555567888876666665   555544332 2211011 1110    011


Q ss_pred             CHHHHHHH-HHHHHHH---HHHHHHHHHhhhccchhHHHH---hhhhhh-HHHHHHHHHhhhhhhcccccccccceehHH
Q 028230           73 KFSILSRI-ILLSFIG---VLSQIFGYTGIACSSPTLSSA---ISNLTP-AFTFTLAVLFRMEKLALRTLSTQAKIIGTM  144 (211)
Q Consensus        73 ~~~~~~~l-~~lg~~g---~~~~~l~~~gl~~tsa~~as~---i~~~~P-v~~~lla~l~~~E~~~~~~~~~~~~~~Gi~  144 (211)
                      +++.+.+- +...+-|   ...+.++..|-+..+.+.+.+   +..-.+ ++..+-+. ++||+=+-.++.-+.-++|++
T Consensus       252 ~~~~~~~n~l~~~l~G~~W~~~~~~y~~~~~~~g~~~~~~sw~l~m~~~ViistlwGi-~lkE~K~a~~k~~~~l~~G~v  330 (345)
T PRK13499        252 AKPLLITNVLLSALAGVMWYLQFFFYAMGHSKLGAQYDFVSWMLHMSFYVLCGNLWGL-VLKEWKGASRRPVRVLSLGCV  330 (345)
T ss_pred             cchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccchHHHHHhccHHHHHHHHhhh-hhhhccCCCccchhHHHHHHH
Confidence            22222232 2222222   456667777777775555544   553444 55555555 699987632222345677999


Q ss_pred             HHhhhHHHHhh
Q 028230          145 VSISGALVVVL  155 (211)
Q Consensus       145 l~~~Gv~li~~  155 (211)
                      +-+.|+.++..
T Consensus       331 liI~g~~lig~  341 (345)
T PRK13499        331 VIILAANIVGL  341 (345)
T ss_pred             HHHHHHHHHhh
Confidence            99999988763

>PF04657 DUF606: Protein of unknown function, DUF606; InterPro: IPR006750 This family contains uncharacterised bacterial proteins

Probab=96.17  E-value=0.17  Score=38.71  Aligned_cols=105  Identities=16%  Similarity=0.203  Sum_probs=71.3

Q ss_pred             ChHHHHHHHHHHHHHHHHHHHHHhhccccccCCCCHHHHHHHHHHHHHHHHHHHHHHHhhhccchhHHHHhhhhhhHHH-
Q 028230           39 SYYVFVAYSYPLATLALLPLPLIFRNTTTVVPSFKFSILSRIILLSFIGVLSQIFGYTGIACSSPTLSSAISNLTPAFT-  117 (211)
Q Consensus        39 ~p~~l~~~R~~~A~l~l~~~~~~~~~~~~~~~~~~~~~~~~l~~lg~~g~~~~~l~~~gl~~tsa~~as~i~~~~Pv~~-  117 (211)
                      +|+.-++.-+..+.+++..+.... +++.. +..+..+| +...-|++|..+-.+........+++++..+.-+.=++. 
T Consensus        29 s~~~as~i~~~~G~i~~~i~~~~~-~~~~~-~~~~~~p~-w~~lGG~lG~~~V~~~~~~vp~lG~~~~~~l~~~GQl~~s  105 (138)
T PF04657_consen   29 SPLVASFISFGVGFILLLIILLIT-GRPSL-ASLSSVPW-WAYLGGLLGVFFVLSNIILVPRLGAALTTILIVAGQLIAS  105 (138)
T ss_pred             ccHHHHHHHHHHHHHHHHHHHHHh-ccccc-chhccCCh-HHhccHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHH
Confidence            599999999999999888887765 33222 22222223 334477777777778888899999998887766544444 


Q ss_pred             HHHHHH--h--hhhhhcccccccccceehHHHHhhhHHH
Q 028230          118 FTLAVL--F--RMEKLALRTLSTQAKIIGTMVSISGALV  152 (211)
Q Consensus       118 ~lla~l--~--~~E~~~~~~~~~~~~~~Gi~l~~~Gv~l  152 (211)
                      .++.++  +  -+++++      ..|++|+++.++|+.+
T Consensus       106 l~iD~fG~fg~~~~~~~------~~r~lG~~l~i~Gv~L  138 (138)
T PF04657_consen  106 LLIDHFGLFGAPKRPFS------LRRILGLALMIAGVIL  138 (138)
T ss_pred             HHHHHccccCCCCCCCC------HHHHHHHHHHHHHHhC
Confidence            444553  2  234444      3579999999999863

>PF00893 Multi_Drug_Res: Small Multidrug Resistance protein; InterPro: IPR000390 Members of this family which have been characterised, belong to the small multidrug resistance (Smr) protein family and are integral membrane proteins

Probab=95.88  E-value=0.022  Score=40.55  Aligned_cols=56  Identities=21%  Similarity=0.195  Sum_probs=33.2

Q ss_pred             HHHH-HHHHHHHHHhhhccchhHH-HHhhhhhhHHHHHHHHHhhhhhhcccccccccceehHHH
Q 028230           84 SFIG-VLSQIFGYTGIACSSPTLS-SAISNLTPAFTFTLAVLFRMEKLALRTLSTQAKIIGTMV  145 (211)
Q Consensus        84 g~~g-~~~~~l~~~gl~~tsa~~a-s~i~~~~Pv~~~lla~l~~~E~~~~~~~~~~~~~~Gi~l  145 (211)
                      .+.+ .....++..++++.+.+.| ++...+..+.+.+.+.++++|++|++      |++|+.+
T Consensus        35 ~~~~~~~s~~~l~~al~~lp~~vaYavw~g~g~v~~~~~~~~~f~E~~s~~------~~~gi~l   92 (93)
T PF00893_consen   35 AVVGYGLSFYFLSLALKKLPLSVAYAVWTGLGIVGVTLVGVFFFGESLSLS------KWLGIGL   92 (93)
T ss_dssp             HHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHH--------------HHHHHH
T ss_pred             HHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHhCCCCCHH------HHhheee
Confidence            3445 7778899999999999999 66677999999999999999999876      4677654

They confer resistance to a wide range of toxic compounds by removing them for the cells. The efflux is coupled to an influx of protons. An example is Escherichia coli mvrC P23895 from SWISSPROT which prevents the incorporation of methyl viologen into cells [] and is involved in ethidium bromide efflux [].; GO: 0016021 integral to membrane; PDB: 2I68_A.

>KOG1443 consensus Predicted integral membrane protein [Function unknown]

Probab=94.91  E-value=0.052  Score=46.88  Aligned_cols=62  Identities=11%  Similarity=0.195  Sum_probs=51.3

Q ss_pred             CCCHHHH-HHHHHHHHHHHHHHHHHHHhhhccchhHHHHhhhhhhHHHHHHHHHhhhhhhccc
Q 028230           71 SFKFSIL-SRIILLSFIGVLSQIFGYTGIACSSPTLSSAISNLTPAFTFTLAVLFRMEKLALR  132 (211)
Q Consensus        71 ~~~~~~~-~~l~~lg~~g~~~~~l~~~gl~~tsa~~as~i~~~~Pv~~~lla~l~~~E~~~~~  132 (211)
                      +.+++|. +++.-.|+.++..-.+-+++++|++.+.=+..=+..|+|+.+++.++.-||.++.
T Consensus        77 ~~sw~~~Lr~~aPtalata~DIGLSN~sl~yVtlSlYTM~KSSsi~FIllFs~if~lEk~~w~  139 (349)
T KOG1443|consen   77 VLSWRDYLRRLAPTALATALDIGLSNWSLEYVTLSLYTMTKSSSILFILLFSLIFKLEKFRWA  139 (349)
T ss_pred             CCcHHHHHHHhhhhhhhhhcccccccceeeeeeeeeeeeccccHHHHHHHHHHHHHhHHHHHH
Confidence            4566654 4556677766788889999999999998888889999999999999999999763

>TIGR00803 nst UDP-galactose transporter

Probab=94.13  E-value=0.31  Score=39.82  Aligned_cols=61  Identities=11%  Similarity=0.090  Sum_probs=52.4

Q ss_pred             HHHHHHHHHHHHhhhccchhHHHHhhhhhhHHHHHHHHHhhhhhhcccccccccceehHHHHhhhHH
Q 028230           85 FIGVLSQIFGYTGIACSSPTLSSAISNLTPAFTFTLAVLFRMEKLALRTLSTQAKIIGTMVSISGAL  151 (211)
Q Consensus        85 ~~g~~~~~l~~~gl~~tsa~~as~i~~~~Pv~~~lla~l~~~E~~~~~~~~~~~~~~Gi~l~~~Gv~  151 (211)
                      +.....+.+...-++|.++..-+....+.++++.+++.++++|+++..      ++.|+.+.+.|+.
T Consensus       160 ~~~a~~~~~v~~vlk~~~~~~~~~~~~~~~~~s~lls~~~f~~~ls~~------~~~g~~lV~~~~~  220 (222)
T TIGR00803       160 LLNVGGGLCIGGVVRYADNTTKSFVTALSIILSTLASVRLFDAKISST------FYLGAILVFLATF  220 (222)
T ss_pred             HHHHhcCceeeehhHHhHHHHHHHHHHHHHHHHHHHHHHHhcCCccHH------HHHHHHHHHeeeE
Confidence            333666778889999999999999999999999999999999999865      5889888888764

NSTs generally appear to function by antiport mechanisms, exchanging a nucleotide-sugar for a nucleotide. Thus, CMP-sialic acid is exchanged for CMP; GDP-mannose is preferentially exchanged for GMP, and UDP-galactose and UDP-N-acetylglucosamine are exchanged for UMP (or possibly UDP). Other nucleotide sugars (e.g., GDP-fucose, UDP-xylose, UDP-glucose, UDP-N-acetylgalactosamine, etc.) may also be transported in exchange for various nucleotides, but their transporters have not been molecularly characterized. Each compound appears to be translocated by its own transport protein. Transport allows the compound, synthesized in the cytoplasm, to be exported to the lumen of the Golgi apparatus or the endoplasmic reticulum where it is used for the synthesis of glycoproteins and glycolipids.

>KOG1444 consensus Nucleotide-sugar transporter VRG4/SQV-7 [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]

Probab=93.81  E-value=0.54  Score=40.79  Aligned_cols=138  Identities=19%  Similarity=0.198  Sum_probs=100.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHHHHHHHHHHhhccc----cccCCCCHHHHHHHHHHHH
Q 028230           11 LLLSATVAVECTTVGLNTLFKAAASK-GLSYYVFVAYSYPLATLALLPLPLIFRNTT----TVVPSFKFSILSRIILLSF   85 (211)
Q Consensus        11 ~~~~~l~~~~~~wg~~~i~~K~~~~~-~~~p~~l~~~R~~~A~l~l~~~~~~~~~~~----~~~~~~~~~~~~~l~~lg~   85 (211)
                      .+|..+....+.-....+..|...+. +.+-+.+.+|--+.+.+.+..+.+..+|.+    ..........+..+.+-++
T Consensus       157 ~gY~w~~~n~~~~a~~~v~~kk~vd~~~l~~~~lv~yNnl~~L~~l~~~~~~~ge~~~l~~~~~~~~~~~~~~~~~lScv  236 (314)
T KOG1444|consen  157 RGYSWALANCLTTAAFVVYVKKSVDSANLNKFGLVFYNNLLSLPPLLILSFITGELDALSLNFDNWSDSSVLVVMLLSCV  236 (314)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHhhccccccceeEEeehhHHHHHHHHHHHHHhcchHHHHhhcccccchhHHHHHHHHHH
Confidence            46777777788888888888887653 688889999999999888877765551211    0000112334556677777


Q ss_pred             HHHHHHHHHHHhhhccchhHHHHhhhhhhHHHHHHHHHhhhhhhcccccccccceehHHHHhhhHHHHh
Q 028230           86 IGVLSQIFGYTGIACSSPTLSSAISNLTPAFTFTLAVLFRMEKLALRTLSTQAKIIGTMVSISGALVVV  154 (211)
Q Consensus        86 ~g~~~~~l~~~gl~~tsa~~as~i~~~~Pv~~~lla~l~~~E~~~~~~~~~~~~~~Gi~l~~~Gv~li~  154 (211)
                      +|++-+++-++..+.+||..-++.-...=..+.+...++.+++.++      ..++|+.+++.|-+.-.
T Consensus       237 ~gf~isy~s~~ct~~~SAtT~tivG~~n~l~t~l~~ll~~d~~~~~------~n~~gll~~~~ggv~Y~  299 (314)
T KOG1444|consen  237 MGFGISYTSFLCTRVNSATTTTIVGAKNKLLTYLGGLLFGDKPFTF------LNVIGLLVGFFGGVLYS  299 (314)
T ss_pred             HHHHHHHHHHHHHhhccccceeehhhhhhHHHHHHHHhcCCceech------hhhHHHHHHhhhhhHHh
Confidence            7777788889999999999888888666666666667777888875      46899999999987665

>KOG2765 consensus Predicted membrane protein [Function unknown]

Probab=93.76  E-value=0.47  Score=42.17  Aligned_cols=140  Identities=17%  Similarity=0.176  Sum_probs=97.7

Q ss_pred             HhHHHHHHHHHHHHHHHHHHHHHHHHHhC---CCChHHHHHHHHHHHHHHHHHHHHHhhccccc--cCCCCHHHHHHHHH
Q 028230            8 REALLLSATVAVECTTVGLNTLFKAAASK---GLSYYVFVAYSYPLATLALLPLPLIFRNTTTV--VPSFKFSILSRIIL   82 (211)
Q Consensus         8 ~~~~~~~~l~~~~~~wg~~~i~~K~~~~~---~~~p~~l~~~R~~~A~l~l~~~~~~~~~~~~~--~~~~~~~~~~~l~~   82 (211)
                      +...+.++.+++++.+|.+.+..|.-.++   .++--.+-.+=-++..++++|..+.. ..-.+  .+-++..+...++.
T Consensus       244 ~~llG~llaL~sA~~YavY~vllk~~~~~eg~rvdi~lffGfvGLfnllllwP~l~iL-~~~~~e~F~lP~~~q~~~vv~  322 (416)
T KOG2765|consen  244 RPLLGNLLALLSALLYAVYTVLLKRKIGDEGERVDIQLFFGFVGLFNLLLLWPPLIIL-DFFGEERFELPSSTQFSLVVF  322 (416)
T ss_pred             chhHHHHHHHHHHHHHHHHHHHHHhhcccccccccHHHHHHHHHHHHHHHHhHHHHHH-HHhccCcccCCCCceeEeeeH
Confidence            34668889999999999999999975543   24444444455556677777766543 21111  01123344556778


Q ss_pred             HHHHH-HHHHHHHHHhhhccchhHHHHhhh-hhhHHHHHHHHHhhhhhhcccccccccceehHHHHhhhHHHHhh
Q 028230           83 LSFIG-VLSQIFGYTGIACSSPTLSSAISN-LTPAFTFTLAVLFRMEKLALRTLSTQAKIIGTMVSISGALVVVL  155 (211)
Q Consensus        83 lg~~g-~~~~~l~~~gl~~tsa~~as~i~~-~~Pv~~~lla~l~~~E~~~~~~~~~~~~~~Gi~l~~~Gv~li~~  155 (211)
                      .+++| ++.-+++..|.-.|++-.+++=++ ++|+ .++.-.++.+.++++      ..++|.+..++|-+.+..
T Consensus       323 ~~ligtvvSDylW~~a~~lTs~Lv~TlgmSltIPL-A~~aD~l~k~~~~S~------~~iiGsi~Ifv~Fv~vn~  390 (416)
T KOG2765|consen  323 NNLIGTVVSDYLWAKAVLLTSPLVVTLGMSLTIPL-AMFADVLIKGKHPSA------LYIIGSIPIFVGFVIVNI  390 (416)
T ss_pred             hhHHHHHHHHHHHHHHHHhccchhheeeeeEeeeH-HHHHHHHHcCCCCCH------HHHHHHHHHHHHHhheec
Confidence            89999 999999999999999999988777 4555 445556665666654      578999999999877763

>KOG1580 consensus UDP-galactose transporter related protein [Carbohydrate transport and metabolism]

Probab=92.46  E-value=0.35  Score=40.58  Aligned_cols=96  Identities=16%  Similarity=0.146  Sum_probs=70.3

Q ss_pred             HHHHHHHHHHHHHHHHHhhhccchhHHHHhhhhhhHHHHHHHHHhhhhhhcccccccccceehHHHHhhhHHHHhhhcCC
Q 028230           80 IILLSFIGVLSQIFGYTGIACSSPTLSSAISNLTPAFTFTLAVLFRMEKLALRTLSTQAKIIGTMVSISGALVVVLYKGP  159 (211)
Q Consensus        80 l~~lg~~g~~~~~l~~~gl~~tsa~~as~i~~~~Pv~~~lla~l~~~E~~~~~~~~~~~~~~Gi~l~~~Gv~li~~~~g~  159 (211)
                      ...+++--.+.+..-+.++||.+=-...+=-++-|+=+++++.++.|++-+|+      |...++..++|+++.. ++.+
T Consensus        88 YaAcs~sYLlAMVssN~Alq~vpYPTqVlgKScKPIPVMilGVl~~~KsY~w~------kY~cVL~IV~GValFm-YK~~  160 (337)
T KOG1580|consen   88 YAACSASYLLAMVSSNQALQYVPYPTQVLGKSCKPIPVMILGVLFAHKSYHWR------KYCCVLMIVVGVALFM-YKEN  160 (337)
T ss_pred             HHHHHHHHHHHHHhccchhcccCCcHHHhcccCCCcceeeeehhhhcccccHH------HHHHHHHHHHHHHHhh-cccc
Confidence            34444422556667788999999888888888999999999999999988775      5889999999998875 6643


Q ss_pred             cccCCCCCCCCCccCccccccCCCCCCchHHHHHHHHHHHHH
Q 028230          160 TIFLGTSPSSTHSTNSLHWLMGSPSVSNWVTGGFLLAAQCFL  201 (211)
Q Consensus       160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~ll~l~a~~~  201 (211)
                      ...                   +....+...|.++++.|---
T Consensus       161 Kv~-------------------g~e~~t~g~GElLL~lSL~m  183 (337)
T KOG1580|consen  161 KVG-------------------GAEDKTFGFGELLLILSLAM  183 (337)
T ss_pred             ccC-------------------CCcccccchHHHHHHHHHHh
Confidence            221                   12234456788888876543

>KOG2922 consensus Uncharacterized conserved protein [Function unknown]

Probab=92.37  E-value=0.065  Score=46.49  Aligned_cols=117  Identities=16%  Similarity=0.182  Sum_probs=84.4

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHhhccccccCCCCHHHHHHHHHHHHHH-
Q 028230            9 EALLLSATVAVECTTVGLNTLFKAAASKGLSYYVFVAYSYPLATLALLPLPLIFRNTTTVVPSFKFSILSRIILLSFIG-   87 (211)
Q Consensus         9 ~~~~~~~l~~~~~~wg~~~i~~K~~~~~~~~p~~l~~~R~~~A~l~l~~~~~~~~~~~~~~~~~~~~~~~~l~~lg~~g-   87 (211)
                      ...+....+.+.++-|.++++-|.+..+           ...       -.. + ....  +..-.++  +....|.+- 
T Consensus        19 ~~~G~~LaissS~~Ig~sfilkKkgl~r-----------~~~-------~~~-r-a~~g--g~~yl~~--~~Ww~G~ltm   74 (335)
T KOG2922|consen   19 NIIGLVLAISSSIFIGSSFILKKKGLKR-----------AGA-------SGL-R-AGEG--GYGYLKE--PLWWAGMLTM   74 (335)
T ss_pred             ceeeeeehhhccEEEeeehhhhHHHHHH-----------Hhh-------hcc-c-ccCC--Ccchhhh--HHHHHHHHHH
Confidence            4456677778888999999999987653           110       000 1 1111  1111233  344567776 


Q ss_pred             HHHHHHHHHhhhccchhHHHHhhhhhhHHHHHHHHHhhhhhhcccccccccceehHHHHhhhHHHHhh
Q 028230           88 VLSQIFGYTGIACSSPTLSSAISNLTPAFTFTLAVLFRMEKLALRTLSTQAKIIGTMVSISGALVVVL  155 (211)
Q Consensus        88 ~~~~~l~~~gl~~tsa~~as~i~~~~Pv~~~lla~l~~~E~~~~~~~~~~~~~~Gi~l~~~Gv~li~~  155 (211)
                      .+....-|.+..+.+++.-+-+-++.-++.++++..+++||+++.      -.+|.++|++|-.+++.
T Consensus        75 ~vGei~NFaAYaFAPasLVtPLGAlsvi~saila~~~L~Ekl~~~------g~lGc~l~v~Gst~iV~  136 (335)
T KOG2922|consen   75 IVGEIANFAAYAFAPASLVTPLGALSVIISAILASFFLKEKLNLL------GILGCVLCVVGSTTIVI  136 (335)
T ss_pred             HHHhHhhHHHHhhchHhhhccchhHHHHHHHHHHHHHHHHHHHHh------hhhheeEEecccEEEEE
Confidence            777777788999999999999999999999999999999999875      47899999999988874

>KOG1580 consensus UDP-galactose transporter related protein [Carbohydrate transport and metabolism]

Probab=90.36  E-value=0.34  Score=40.66  Aligned_cols=73  Identities=23%  Similarity=0.316  Sum_probs=62.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhhhccchhHHHHhhhhhhHHHHHHHHHhhhhhhcccccccccceehHHHHhhhHHHHh
Q 028230           76 ILSRIILLSFIGVLSQIFGYTGIACSSPTLSSAISNLTPAFTFTLAVLFRMEKLALRTLSTQAKIIGTMVSISGALVVV  154 (211)
Q Consensus        76 ~~~~l~~lg~~g~~~~~l~~~gl~~tsa~~as~i~~~~Pv~~~lla~l~~~E~~~~~~~~~~~~~~Gi~l~~~Gv~li~  154 (211)
                      .|..+..+++.+.+.|.+.|.-+.+-+|-.-|++..+--.||.+.+.+++..+++.|      +|+|.++.|.+...=.
T Consensus       240 ~~~~l~l~ai~s~LGQ~fIF~tv~~FgPLtCSivTTTRKfFTil~SVllf~npls~r------QwlgtvlVF~aL~~D~  312 (337)
T KOG1580|consen  240 VFWDLTLLAIASCLGQWFIFKTVEEFGPLTCSIVTTTRKFFTILISVLLFNNPLSGR------QWLGTVLVFSALTADV  312 (337)
T ss_pred             HHHHHHHHHHHHHhhhHHHHHHHHHhCCeeEEEEeehHHHHHHHHHHHHhcCcCcHH------HHHHHHHHHHHhhhHh
Confidence            355667777777888999999999999999999999999999999999999999876      5899999999976543

>COG4975 GlcU Putative glucose uptake permease [Carbohydrate transport and metabolism]

Probab=88.68  E-value=0.029  Score=47.06  Aligned_cols=164  Identities=13%  Similarity=0.066  Sum_probs=95.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHhhccccccCCCCHHHHHHHHHHHHHHHHHH
Q 028230           12 LLSATVAVECTTVGLNTLFKAAASKGLSYYVFVAYSYPLATLALLPLPLIFRNTTTVVPSFKFSILSRIILLSFIGVLSQ   91 (211)
Q Consensus        12 ~~~~l~~~~~~wg~~~i~~K~~~~~~~~p~~l~~~R~~~A~l~l~~~~~~~~~~~~~~~~~~~~~~~~l~~lg~~g~~~~   91 (211)
                      .++..++-++.||+...+.-.   -|=.|.+=..--- ++++++....++. .+    |..+.+.+..-++-|.+=...|
T Consensus         3 ~~liaL~P~l~WGsip~v~~k---~GG~p~qQ~lGtT-~GALifaiiv~~~-~~----p~~T~~~~iv~~isG~~Ws~GQ   73 (288)
T COG4975           3 DLLIALLPALGWGSIPLVANK---FGGKPYQQTLGTT-LGALIFAIIVFLF-VS----PELTLTIFIVGFISGAFWSFGQ   73 (288)
T ss_pred             hHHHHHHHHHHhcccceeeee---cCCChhHhhhhcc-HHHHHHHHHHhee-ec----CccchhhHHHHHHhhhHhhhhh
Confidence            456667788999999877542   2345654433222 3333333333332 12    4455554443333333326789


Q ss_pred             HHHHHhhhccchhHHHHhhh-hhhHHHHHHHHHhhhhhhccccccccccee---hHHHHhhhHHHHhhhcCCcccCCCCC
Q 028230           92 IFGYTGIACSSPTLSSAISN-LTPAFTFTLAVLFRMEKLALRTLSTQAKII---GTMVSISGALVVVLYKGPTIFLGTSP  167 (211)
Q Consensus        92 ~l~~~gl~~tsa~~as~i~~-~~Pv~~~lla~l~~~E~~~~~~~~~~~~~~---Gi~l~~~Gv~li~~~~g~~~~~~~~~  167 (211)
                      ..++.+.++.+.+.|.=+.+ +.=+-+.+++++.++|--+..+     .++   .+++.+.|+.+-+..+.+.       
T Consensus        74 ~~Qfka~~~iGVSkamPiStG~QLVg~sL~gV~~f~EW~t~~~-----~IlG~iAliliviG~~lTs~~~~~n-------  141 (288)
T COG4975          74 ANQFKAIQLIGVSKAMPISTGMQLVGTSLFGVFVFHEWTTPTQ-----IILGFIALILIVIGIYLTSKQDRNN-------  141 (288)
T ss_pred             hhhhhheeeeeeeccccccchhhHhhceeeeEEEEeccCcchh-----HHHHHHHHHHHHHhheEeeeecccc-------
Confidence            99999999999999886655 6677788889999999654332     222   2334444544332111000       


Q ss_pred             CCCCccCccccccCCCCCCchHHHHHHHHHHHHHHHHHHHH
Q 028230          168 SSTHSTNSLHWLMGSPSVSNWVTGGFLLAAQCFLLSIWSIL  208 (211)
Q Consensus       168 ~~~~~~~~~~~~~~~~~~~~~~~G~ll~l~a~~~~a~y~vl  208 (211)
                             ..     ..+.+|.-.|...++.|.+.|-.|.|+
T Consensus       142 -------k~-----~~~~~n~kkgi~~L~iSt~GYv~yvvl  170 (288)
T COG4975         142 -------KE-----EENPSNLKKGIVILLISTLGYVGYVVL  170 (288)
T ss_pred             -------cc-----ccChHhhhhheeeeeeeccceeeeEee
Confidence                   00     123345567888888888888777654

>COG3238 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=87.31  E-value=12  Score=29.10  Aligned_cols=110  Identities=14%  Similarity=0.043  Sum_probs=61.3

Q ss_pred             ChHHHHHHHHHHHHHHHHHHHHHhhccccccCCCCHHHHHHHHHHHHHHHHHHHHHHHhhhccchhHHHHh-hhhhhHHH
Q 028230           39 SYYVFVAYSYPLATLALLPLPLIFRNTTTVVPSFKFSILSRIILLSFIGVLSQIFGYTGIACSSPTLSSAI-SNLTPAFT  117 (211)
Q Consensus        39 ~p~~l~~~R~~~A~l~l~~~~~~~~~~~~~~~~~~~~~~~~l~~lg~~g~~~~~l~~~gl~~tsa~~as~i-~~~~Pv~~  117 (211)
                      +|+.-.+.-|..++.++..+.+.. +++.. .....+.-++...-|++|..+-..-........+++...+ ..-+=+..
T Consensus        33 spl~As~isf~vGt~~L~~l~l~~-~~~~~-~a~~~~~pwW~~~GG~lGa~~vt~s~~l~p~lGa~~t~~l~i~gQli~g  110 (150)
T COG3238          33 SPLLASLISFLVGTVLLLILLLIK-QGHPG-LAAVASAPWWAWIGGLLGAIFVTSSILLAPRLGAATTIALVIAGQLIMG  110 (150)
T ss_pred             ChHHHHHHHHHHHHHHHHHHHHHh-cCCCc-hhhccCCchHHHHccchhhhhhhhhHHhccchhHHHHHHHHHHHHHHHH
Confidence            699999999999998888877664 43321 1111121223344556664444444455555555544333 33334444


Q ss_pred             HHHHHH-hhhhhhcccccccccceehHHHHhhhHHHH
Q 028230          118 FTLAVL-FRMEKLALRTLSTQAKIIGTMVSISGALVV  153 (211)
Q Consensus       118 ~lla~l-~~~E~~~~~~~~~~~~~~Gi~l~~~Gv~li  153 (211)
                      .++..+ +++++.   +..+..|+.|+++.++|++++
T Consensus       111 lliD~fG~~g~~~---~~~~~~r~lgi~L~l~gil~~  144 (150)
T COG3238         111 LLIDHFGWFGVPK---RPLNLPRILGILLVLAGILLA  144 (150)
T ss_pred             HHHHhhcccCCCc---CCCCHHHHHHHHHHHHHHHHh
Confidence            444443 233322   223456899999999995544

>KOG1581 consensus UDP-galactose transporter related protein [Carbohydrate transport and metabolism]

Probab=86.20  E-value=22  Score=30.99  Aligned_cols=140  Identities=16%  Similarity=0.115  Sum_probs=84.9

Q ss_pred             ChHHHHHHHHHHHHHHHHHHHHHhhccccccCCCCHHHHHHHHHHHHHHHHHHHHHHHhhhccchhHHHHhhh--hhhHH
Q 028230           39 SYYVFVAYSYPLATLALLPLPLIFRNTTTVVPSFKFSILSRIILLSFIGVLSQIFGYTGIACSSPTLSSAISN--LTPAF  116 (211)
Q Consensus        39 ~p~~l~~~R~~~A~l~l~~~~~~~~~~~~~~~~~~~~~~~~l~~lg~~g~~~~~l~~~gl~~tsa~~as~i~~--~~Pv~  116 (211)
                      +|..+.+..-+.+.++=......   ++..  ...++.|......++...+...+.|.+++|.|=-.-.+==+  +.|++
T Consensus        50 ~~~fL~~~q~l~~~~~s~~~l~~---~k~~--~~~~apl~~y~~is~tn~~s~~~~yeaLKyvSyPtq~LaKscKmIPVm  124 (327)
T KOG1581|consen   50 HSLFLVFCQRLVALLVSYAMLKW---WKKE--LSGVAPLYKYSLISFTNTLSSWCGYEALKYVSYPTQTLAKSCKMIPVM  124 (327)
T ss_pred             ccHHHHHHHHHHHHHHHHHHHhc---cccc--CCCCCchhHHhHHHHHhhcchHHHHHHHHhccchHHHHHHHhhhhHHH
Confidence            55667777766665554333322   2221  22345566778888877888889999999987554444333  56665


Q ss_pred             HHHHHHHhhhhhhcccccccccceehHHHHhhhHHHHhhhcCCcccCCCCCCCCCccCccccccCCCCCCchHHHHHHHH
Q 028230          117 TFTLAVLFRMEKLALRTLSTQAKIIGTMVSISGALVVVLYKGPTIFLGTSPSSTHSTNSLHWLMGSPSVSNWVTGGFLLA  196 (211)
Q Consensus       117 ~~lla~l~~~E~~~~~~~~~~~~~~Gi~l~~~Gv~li~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~ll~l  196 (211)
                        +...++.+.|.+.+      +-+-..+.-.|+.+....+.+.     +         ++    ....+|...|.+++.
T Consensus       125 --lmg~Lvy~~ky~~~------eYl~~~LIs~GvsiF~l~~~s~-----s---------~~----~~g~~ns~~G~~Ll~  178 (327)
T KOG1581|consen  125 --LMGTLVYGRKYSSF------EYLVAFLISLGVSIFSLFPNSD-----S---------SS----KSGRENSPIGILLLF  178 (327)
T ss_pred             --HHHHHHhcCccCcH------HHHHHHHHHhheeeEEEecCCC-----C---------cc----ccCCCCchHhHHHHH
Confidence              56788888888765      4555556667776555432211     0         00    112345678988888


Q ss_pred             HHHHHHHHHHHHc
Q 028230          197 AQCFLLSIWSILL  209 (211)
Q Consensus       197 ~a~~~~a~y~vlq  209 (211)
                      ..-+.=++-+..|
T Consensus       179 ~~L~fDgfTn~tQ  191 (327)
T KOG1581|consen  179 GYLLFDGFTNATQ  191 (327)
T ss_pred             HHHHHHhhHHhHH
Confidence            7776555555555

>KOG3912 consensus Predicted integral membrane protein [General function prediction only]

Probab=84.96  E-value=15  Score=31.78  Aligned_cols=138  Identities=13%  Similarity=0.119  Sum_probs=90.6

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHH-hCCCChHHHHHHHHHHHHHH----HHHHHHHhhccccc--cCCCCHHHHHHH-
Q 028230            9 EALLLSATVAVECTTVGLNTLFKAAA-SKGLSYYVFVAYSYPLATLA----LLPLPLIFRNTTTV--VPSFKFSILSRI-   80 (211)
Q Consensus         9 ~~~~~~~l~~~~~~wg~~~i~~K~~~-~~~~~p~~l~~~R~~~A~l~----l~~~~~~~~~~~~~--~~~~~~~~~~~l-   80 (211)
                      ...+.++.+.++++-+.-++.-..-+ ..+++|...+.+.-+.+..+    ..|+.+.. ..+..  .++-.+.||... 
T Consensus       174 iitGdllIiiaqiivaiQ~v~Eek~l~~~nV~pl~avg~eGlfG~v~~slL~i~m~yi~-~~~sfS~~~~g~~eD~~~~~  252 (372)
T KOG3912|consen  174 IITGDLLIIIAQIIVAIQMVCEEKQLKKSNVAPLQAVGWEGLFGLVILSLLAIPMYYIP-SGDSFSCNPRGVLEDWGDAF  252 (372)
T ss_pred             chhhhHHHHHHHHHHHHHHHHHHhhhhhccCCHHHHhhhhhhHHHHHHHHHHHHHhhee-cCCcCcCCCCcchhhHHHHH
Confidence            35678889999999999998865444 45799999999998777443    34444332 11110  123234454422 


Q ss_pred             --------HHHHHHH-HHHHHHHH-Hhh---hccchhHHHHhhhhhhHHHHHHHHHhhhhhhcccccccccceehHHHHh
Q 028230           81 --------ILLSFIG-VLSQIFGY-TGI---ACSSPTLSSAISNLTPAFTFTLAVLFRMEKLALRTLSTQAKIIGTMVSI  147 (211)
Q Consensus        81 --------~~lg~~g-~~~~~l~~-~gl---~~tsa~~as~i~~~~Pv~~~lla~l~~~E~~~~~~~~~~~~~~Gi~l~~  147 (211)
                              +.+.+.+ ...-.+|+ .|+   ++.||++=.++-..=..++-+++.....|+++.-      ++.|.++-+
T Consensus       253 ~~~~e~p~l~val~~~~vSiAffNfaGlsitk~~SattRmllD~lRt~~IWv~si~m~~E~f~ll------qilGFliLi  326 (372)
T KOG3912|consen  253 AALQESPSLAVALIGFTVSIAFFNFAGLSITKELSATTRMLLDSLRTYVIWVFSIAMGWEYFHLL------QILGFLILI  326 (372)
T ss_pred             HHhcCCchhHHHHhhhhhheeeeeehhhHHHHHhhHHHHHHHHhhhhhhhhHhHHHHHHHHHHHH------HHHHHHHHH
Confidence                    2344444 33322332 333   4567888888888777788888888999999764      689999999


Q ss_pred             hhHHHH
Q 028230          148 SGALVV  153 (211)
Q Consensus       148 ~Gv~li  153 (211)
                      .|.++-
T Consensus       327 ~Gi~lY  332 (372)
T KOG3912|consen  327 MGIILY  332 (372)
T ss_pred             HHHHHH
Confidence            998764

>KOG1581 consensus UDP-galactose transporter related protein [Carbohydrate transport and metabolism]

Probab=84.13  E-value=23  Score=30.92  Aligned_cols=137  Identities=12%  Similarity=0.084  Sum_probs=91.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHh-CCCChHHHHHHHHHHHHHHHHHHHHHhhccccccC-----CCCHHHHHHHHHH
Q 028230           10 ALLLSATVAVECTTVGLNTLFKAAAS-KGLSYYVFVAYSYPLATLALLPLPLIFRNTTTVVP-----SFKFSILSRIILL   83 (211)
Q Consensus        10 ~~~~~~l~~~~~~wg~~~i~~K~~~~-~~~~p~~l~~~R~~~A~l~l~~~~~~~~~~~~~~~-----~~~~~~~~~l~~l   83 (211)
                      ..++.++..--++=|.....-+...+ ..+++..+.++-.+..++.=.....-   .....+     +..++-+.-++++
T Consensus       171 ~~G~~Ll~~~L~fDgfTn~tQd~lf~~~k~s~~~mM~~vNLf~~i~~~~~li~---qg~~~~av~F~~~hp~~~~Di~l~  247 (327)
T KOG1581|consen  171 PIGILLLFGYLLFDGFTNATQDSLFKKYKVSSLHMMFGVNLFSAILNGTYLIL---QGHLLPAVSFIKEHPDVAFDILLY  247 (327)
T ss_pred             hHhHHHHHHHHHHHhhHHhHHHHHhccCCccHhHHHHHHHHHHHHHHHHhhhc---CCCCchHHHHHHcChhHHHHHHHH
Confidence            44555555444444444444333333 46899998888877776654433221   111101     1123445567788


Q ss_pred             HHHHHHHHHHHHHhhhccchhHHHHhhhhhhHHHHHHHHHhhhhhhcccccccccceehHHHHhhhHHHHhh
Q 028230           84 SFIGVLSQIFGYTGIACSSPTLSSAISNLTPAFTFTLAVLFRMEKLALRTLSTQAKIIGTMVSISGALVVVL  155 (211)
Q Consensus        84 g~~g~~~~~l~~~gl~~tsa~~as~i~~~~Pv~~~lla~l~~~E~~~~~~~~~~~~~~Gi~l~~~Gv~li~~  155 (211)
                      +.+|++.|.+.|.-++.-.+-.-+.|+.+==++..+++.+.++.++++.      ++.|+.+.|.|..+=+.
T Consensus       248 s~~gavGQ~FI~~TI~~FGslt~t~I~ttRk~~si~lS~i~f~h~~s~~------q~~g~~iVFg~i~l~~~  313 (327)
T KOG1581|consen  248 STCGAVGQLFIFYTIERFGSLTFTTIMTTRKMVSIMLSCIVFGHPLSSE------QWLGVLIVFGGIFLEIL  313 (327)
T ss_pred             HHhhhhhhheehhhHhhcccHHHHHHHHHHHHHHHHHHHHHhCCccchh------hccCeeeehHHHHHHHH
Confidence            8888777888888888877777778888888999999999999999765      68899999988876553

>COG4975 GlcU Putative glucose uptake permease [Carbohydrate transport and metabolism]

Probab=81.20  E-value=1.5  Score=37.02  Aligned_cols=133  Identities=20%  Similarity=0.179  Sum_probs=78.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHhhccccccCCCCHHHHHHHHHHHHHHHHH
Q 028230           11 LLLSATVAVECTTVGLNTLFKAAASKGLSYYVFVAYSYPLATLALLPLPLIFRNTTTVVPSFKFSILSRIILLSFIGVLS   90 (211)
Q Consensus        11 ~~~~~l~~~~~~wg~~~i~~K~~~~~~~~p~~l~~~R~~~A~l~l~~~~~~~~~~~~~~~~~~~~~~~~l~~lg~~g~~~   90 (211)
                      |+...++.+.+-+-.+.+..+.---++.+.+.--+.-+.++++++--    + +. +  ++.++..+ .-..-|++=...
T Consensus       152 kgi~~L~iSt~GYv~yvvl~~~f~v~g~saiLPqAiGMv~~ali~~~----~-~~-~--~~~~K~t~-~nii~G~~Wa~G  222 (288)
T COG4975         152 KGIVILLISTLGYVGYVVLFQLFDVDGLSAILPQAIGMVIGALILGF----F-KM-E--KRFNKYTW-LNIIPGLIWAIG  222 (288)
T ss_pred             hheeeeeeeccceeeeEeeeccccccchhhhhHHHHHHHHHHHHHhh----c-cc-c--cchHHHHH-HHHhhHHHHHhh
Confidence            34555555555555555555433223555555555556666655432    1 11 1  22233333 334556655667


Q ss_pred             HHHHHHhhhccchhHHHHhhhhhhHHHHHHHHHhhhhhhcccccccccceehHHHHhhhHHHHh
Q 028230           91 QIFGYTGIACSSPTLSSAISNLTPAFTFTLAVLFRMEKLALRTLSTQAKIIGTMVSISGALVVV  154 (211)
Q Consensus        91 ~~l~~~gl~~tsa~~as~i~~~~Pv~~~lla~l~~~E~~~~~~~~~~~~~~Gi~l~~~Gv~li~  154 (211)
                      +.+++.+-+....+.+=.+..+--+...+-+.++++||=|+|++  ..-++|+++.+.|+.++.
T Consensus       223 Nl~ml~a~~~~GvAt~FSlSQlgViisTiGGIl~L~ekKtkkEm--~~v~iGiilivvgai~lg  284 (288)
T COG4975         223 NLFMLLAAQKVGVATSFSLSQLGVIISTIGGILFLGEKKTKKEM--VYVIIGIILIVVGAILLG  284 (288)
T ss_pred             HHHHHHhhhhhceeeeeeHhhheeeeeecceEEEEeccCchhhh--hhhhhhHHHHHHHhhhhh
Confidence            77777777766555554555566666667788999999988874  235668888888887764

>KOG1443 consensus Predicted integral membrane protein [Function unknown]

Probab=81.08  E-value=37  Score=29.73  Aligned_cols=136  Identities=19%  Similarity=0.202  Sum_probs=81.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhCC----CChHHHHHHHHHHHHHHHHHHHHHhhcccccc---CCC---CHH-HHHH
Q 028230           11 LLLSATVAVECTTVGLNTLFKAAASKG----LSYYVFVAYSYPLATLALLPLPLIFRNTTTVV---PSF---KFS-ILSR   79 (211)
Q Consensus        11 ~~~~~l~~~~~~wg~~~i~~K~~~~~~----~~p~~l~~~R~~~A~l~l~~~~~~~~~~~~~~---~~~---~~~-~~~~   79 (211)
                      .+......+.++-|.-..+++..+++.    =+|++..+.=.-.-.+.++|..+.. |+....   +..   +.. -++.
T Consensus       164 ~Gf~lv~~aS~~sGlRW~~tQ~ll~~~~~~~~~P~~ti~~l~p~M~~~Ll~~~l~f-EG~~~~~~s~~f~~~d~~~~~rv  242 (349)
T KOG1443|consen  164 EGFFLVLAASLLSGLRWAFTQMLLRNQPSAKRNPIDTIFHLQPWMSIGLLPLSLLF-EGLHLITSSSIFRFQDTGLILRV  242 (349)
T ss_pred             hhHHHHHHHHHhhhhhHHHHHHHHhcCccccCCCeeeHHHhhhHHHHHHHHHHHHH-cccccchhhhHHHhcCccHHHHH
Confidence            456666667777777777777766531    2466666555445556666666655 543210   000   111 1222


Q ss_pred             HHHHHHHH---HHHHHHHHHhhhccchhHHHHhhhhhhHHHHHHHHHhhhhhhcccccccccceehHHHHhhhHHHH
Q 028230           80 IILLSFIG---VLSQIFGYTGIACSSPTLSSAISNLTPAFTFTLAVLFRMEKLALRTLSTQAKIIGTMVSISGALVV  153 (211)
Q Consensus        80 l~~lg~~g---~~~~~l~~~gl~~tsa~~as~i~~~~Pv~~~lla~l~~~E~~~~~~~~~~~~~~Gi~l~~~Gv~li  153 (211)
                      +..+++.|   +..-...|.=+..||.-.-++.--.-=+.+.+++..+.+|+++..      .+.|..++..|+.+-
T Consensus       243 ~g~i~l~g~laF~l~~sEflLl~~Ts~ltlSIaGI~Kel~tl~la~ii~~d~ls~l------N~~Gl~i~~agi~~~  313 (349)
T KOG1443|consen  243 IGLISLGGLLAFLLEFSEFLLLSRTSSLTLSIAGIVKEVCTLLLAIIILKDQLSLL------NWLGLAICLAGILLH  313 (349)
T ss_pred             HHHHHHHHHHHHHHHHHHHheeeeccceeeeHHHHHHHHHHHHHHHHHhhcchhhh------HHHHHHHHHHHHHHh
Confidence            22333333   233334455556666666666655667788889999999999754      589999999999765

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	211
2i68_A	137	Protein EMRE; transmembrane protein, small-multidr	98.45
3b5d_A	110	Multidrug transporter EMRE; helical membrane prote	98.41

>2i68_A Protein EMRE; transmembrane protein, small-multidrug resistance, transporter, homodimer, dual topology, transport protein; NMR {Escherichia coli}

Probab=98.45  E-value=2.9e-07  Score=69.62  Aligned_cols=69  Identities=25%  Similarity=0.233  Sum_probs=52.9

Q ss_pred             HHHHHH-HHHHHHHHHhhhccchhHHHHh-hhhhhHHHHHHHHHhhhhhhcccccccccceehHHHHhhhHHHHhhh
Q 028230           82 LLSFIG-VLSQIFGYTGIACSSPTLSSAI-SNLTPAFTFTLAVLFRMEKLALRTLSTQAKIIGTMVSISGALVVVLY  156 (211)
Q Consensus        82 ~lg~~g-~~~~~l~~~gl~~tsa~~as~i-~~~~Pv~~~lla~l~~~E~~~~~~~~~~~~~~Gi~l~~~Gv~li~~~  156 (211)
                      ++++++ .+++.+++.++++.+++.+..+ .++.|++++++++++++|+++++      +++|+++.++|++++...
T Consensus        34 ~l~i~~~~ls~~l~~~alk~i~~s~ay~iw~~l~pv~~~l~g~l~lgE~ls~~------~~~Gi~LIi~GV~ll~~~  104 (137)
T 2i68_A           34 VGTIICYCASFWLLAQTLAYIPTGIAYAIWSGVGIVLISLLSWGFFGQRLDLP------AIIGMMLICAGVLIINLL  104 (137)
T ss_dssp             CHHHHHHHHHHHHHHHHHC-----CHHHHHHHHHHHHHHHHHHHHHC------------CHHHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHHHHHHHHHHhCCCCCHH------HHHHHHHHHHHHHHHhcC
Confidence            577778 8999999999999999999888 89999999999999999999875      599999999999998754

>3b5d_A Multidrug transporter EMRE; helical membrane protein, multidrug resistance transporter, SMR, antiport, inner membrane, transmembrane; HET: P4P; 3.80A {Escherichia coli K12} PDB: 3b61_A 3b62_A*

Probab=98.41  E-value=6.2e-07  Score=65.19  Aligned_cols=68  Identities=25%  Similarity=0.236  Sum_probs=61.5

Q ss_pred             HHHHHH-HHHHHHHHHhhhccchhHHHHh-hhhhhHHHHHHHHHhhhhhhcccccccccceehHHHHhhhHHHHhh
Q 028230           82 LLSFIG-VLSQIFGYTGIACSSPTLSSAI-SNLTPAFTFTLAVLFRMEKLALRTLSTQAKIIGTMVSISGALVVVL  155 (211)
Q Consensus        82 ~lg~~g-~~~~~l~~~gl~~tsa~~as~i-~~~~Pv~~~lla~l~~~E~~~~~~~~~~~~~~Gi~l~~~Gv~li~~  155 (211)
                      +.++++ ..++.++..++++.+.+.+..+ ..+.|+++.++++++++|+++++      |++|+.+.++|++++..
T Consensus        34 ~~~~~~~~~~~~~~~~al~~~p~s~ay~i~~g~~~v~~~l~~~~~~~E~~s~~------~~~Gi~lIi~Gv~~l~~  103 (110)
T 3b5d_A           34 VGTIICYCASFWLLAQTLAYIPTGIAYAIWSGVGIVLISLLSWGFFGQRLDLP------AIIGMMLICAGVLIINL  103 (110)
T ss_pred             HHHHHHHHHHHHHHHHHHHhCChhhHHHHHhhHHHHHHHHHHHHHhCCCCCHH------HHHHHHHHHHHHHHHhc
Confidence            567777 8889999999999999999877 79999999999999999999875      59999999999998864

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00