Citrus Sinensis ID: 028231

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-
Protein Sequence
MFNFHFWCCQEECLQRLQLRIDVAYDSSIPEHREALRALWNAAFPDEELRDLISEQWKEMGWQGKDPSTDFRGGGFISLENLLYLARNFPKSFQDLLRKQEGDRSVWEYPFAVAGVNITFMLIQMLDLEAVKPRTMVGATFLKFLSENESAFDLLYCITFKLMDHQWLAMRASYMDFNTVMKSTRRQLERELLLEDVTRLEDLPSYSLLSR
Secondary Structure (PSIPRED)
cccccccHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHccccccccccHHHHHHHccccccccccccccccHHHHHHHHHHHHccHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHcccccccccccccHHHcc
Secondary Structure Prediction (SSPRO)
ccccccHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHcccccccHHHHHHHHHHcccccccccccccHHHHHHHHHHHHHHHcHHHHHHHHHHcccccccccccHHHHHHHHHHHHHHHHHcccccccccccccccHHHcccHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHccccccHcccccHHHHcc
Coil and Loop (DISEMBL)
mfnfhfwcCQEECLQRLQLRIDVAYDSSIPEHREALRALWNAAFPDEELRDLISEQWKemgwqgkdpstdfrgggfiSLENLLYLARNFPKSFQDLLRkqegdrsvweypfavagVNITFMLIQMLdleavkprtMVGATFLKFLSENESAFDLLYCITFKLMDHQWLAMRASYMDFNTVMKSTRRQLERELLLEDVtrledlpsysllsr
Flexible Loop (DISEMBL)
MFNFHFWCCQEECLQRLQLRIDVAYDSSIPEHREALRALWNAAFPDEELRDLISEQWKEMGWQGKDPSTDFRGGGFISLENLLYLARNFPKSFQDLLRKQEGDRSVWEYPFAVAGVNITFMLIQMLDLEAVKPRTMVGATFLKFLSENESAFDLLYCITFKLMDHQWLAMRASYMDFNTVMKSTRRQLEREllledvtrledlpsysllsr
Low Complexity Region (SEG)
MFNFHFWCCQEECLQRLQLRIDVAYDSSIPEHREALRALWNAAFPDEELRDLISEQWKEMGWQGKDPSTDFRGGGFISLENLLYLARNFPKSFQDLLRKQEGDRSVWEYPFAVAGVNITFMLIQMLDLEAVKPRTMVGATFLKFLSENESAFDLLYCITFKLMDHQWLAMRASYMDFNTVMKSTrrqlerellleDVTRLEDLPSYSLLSR
Disordered region (IsUnstruct)
*FNFHFWCCQEECLQRLQLRIDVAYDSSIPEHREALRALWNAAFPDEELRDLISEQWKEMGWQGKDPSTDFRGGGFISLENLLYLARNFPKSFQDLLRKQEGDRSVWEYPFAVAGVNITFMLIQMLDLEAVKPRTMVGATFLKFLSENESAFDLLYCITFKLMDHQWLAMRASYMDFNTVMKSTRRQLERELLLEDV**************
Disordered Region (DISOPRED)
MFNFHFWCCQEECLQRLQLRIDVAYDSSIPEHREALRALWNAAF************WKEMGWQGKDPSTDFRGGGFISLENLLYLARNFPKSFQDLLRKQEGDRSVWEYPFAVAGVNITFMLIQMLDLEAVKPRTMVGATFLKFLSENESAFDLLYCITFKLMDHQWLAMRASYMDFNTVMKSTRRQLERELLLEDVTRLEDLPSYSLLSR
Disordered Region (DISEMBL)
MFNFHFWCCQEECLQRLQLRIDVAYDSSIPEHREALRALWNAAFPDEELRDLISEQWKEMGWQGKDPSTDFRGGGFISLENLLYLARNFPKSFQDLLRKQEGDRSVWEYPFAVAGVNITFMLIQMLDLEAVKPRTMVGATFLKFLSENESAFDLLYCITFKLMDHQWLAMRASYMDFNTVMKSTRRQLERELLLEDVTRLEDLPSYSLLSR
Disordered Region (DISPRO)
**NFHFWCCQEECLQRLQLRIDVAYDSSIPEHREALRALWNAAFPDEELRDLISEQWKEMGWQGKDPSTDFRGGGFISLENLLYLARNFPKSFQDLLRKQEGDRSVWEYPFAVAGVNITFMLIQMLDLEAVKPRTMVGATFLKFLSENESAFDLLYCITFKLMDHQWLAMRASYMDFNTVMKSTRRQLERELLLEDVTRLEDLPSYSLLSR
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MFNFHFWCCQEECLQRLQLRIDVAYDSSIPEHREALRALWNAAFPDEELRDLISEQWKEMGWQGKDPSTDFRGGGFISLENLLYLARNFPKSFQDLLRKQEGDRSVWEYPFAVAGVNITFMLIQMLDLEAVKPRTMVGATFLKFLSENESAFDLLYCITFKLMDHQWLAMRASYMDFNTVMKSTRRQLERELLLEDVTRLEDLPSYSLLSR
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	211	2.2.26 [Sep-21-2011]
Q54YW1	977	ELMO domain-containing pr	yes	no	0.886	0.191	0.313	7e-25
Q54RS7	618	ELMO domain-containing pr	no	no	0.815	0.278	0.340	1e-22
Q54UP9	1267	Ankyrin repeat and ELMO d	no	no	0.758	0.126	0.306	4e-19
Q54VR8	284	ELMO domain-containing pr	no	no	0.687	0.510	0.331	1e-18
Q8IZ81	293	ELMO domain-containing pr	yes	no	0.592	0.426	0.372	2e-18
Q08DZ3	293	ELMO domain-containing pr	yes	no	0.886	0.638	0.308	6e-18
Q499U2	720	Engulfment and cell motil	yes	no	0.909	0.266	0.275	8e-18
A6QR40	652	Engulfment and cell motil	no	no	0.895	0.289	0.274	3e-17
Q96BJ8	720	Engulfment and cell motil	no	no	0.909	0.266	0.265	4e-17
Q8BGF6	293	ELMO domain-containing pr	yes	no	0.592	0.426	0.350	5e-17

>sp|Q54YW1|ELMOA_DICDI ELMO domain-containing protein A OS=Dictyostelium discoideum GN=elmoA PE=1 SV=1

 Score =  114 bits (284), Expect = 7e-25,   Method: Composition-based stats.
 Identities = 67/214 (31%), Positives = 102/214 (47%), Gaps = 27/214 (12%)

Query: 10  QEECLQRLQLRIDVAYDSSIPEHREALRALWNAAFPDEELRDLISEQWKEMGWQGKDPST 69
           Q    Q +  R +V ++    EH   L  LW+  +P  +L   +SEQWK+MG+QG DP T
Sbjct: 362 QRHRFQVITNRKNVTFNKESSEHDALLMKLWSLTYPGVKLESRVSEQWKQMGFQGTDPCT 421

Query: 70  DFRGGGFISLENLLYLARNFPKSFQDLLRKQEGDRSVWEYPFAVAGVNITFML---IQML 126
           DFR  G   L+NL+Y A+N+ + F+ ++  Q  DR   EYP A AG+ +TF L   I  +
Sbjct: 422 DFRAMGIWGLDNLIYFAQNYNEKFRKIVNSQI-DRKEREYPTATAGIVLTFELYNSIFKM 480

Query: 127 DLEAVKPRTMVGAT---------------FLKFLSENESAFDLLYCITFKLMDHQWLAMR 171
               + P     +                F      +  AF+ +YC TF+++D  W  M 
Sbjct: 481 GTPNLNPYNSTTSNTTSNTTSTTNIDDLPFFPLFFSHPHAFEEVYCTTFQILDSTWDDMN 540

Query: 172 ASYMDFNTVMKSTRRQLERELLLEDVTRLEDLPS 205
            +YM F  +M S +  +        +T LE  P+
Sbjct: 541 GTYMHFQKIMSSVKNLI--------ITALESKPT 566

Functions as a negative regulator of actin polymerization. Modulates actin/myosin II at cortex actinomyosins to prevent excessive F-actin polymerization around the cell periphery, thereby maintaining proper cell shape during phagocytosis and chemotaxis.
Dictyostelium discoideum (taxid: 44689)

>sp|Q54RS7|ELMOC_DICDI ELMO domain-containing protein C OS=Dictyostelium discoideum GN=elmoC PE=4 SV=1

 Score =  106 bits (264), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 64/188 (34%), Positives = 103/188 (54%), Gaps = 16/188 (8%)

Query: 10  QEECLQRLQLRIDVAYDSSIPEHREALRALWNAAFPDEELRDLISEQWKEMGWQGKDPST 69
           Q + ++ L  +    Y+S+ P+H E L+ LW+  +P++E +   S  WK+ G+Q  DP+ 
Sbjct: 361 QSQTIKILFQKKSTIYESTNPDHEEYLKHLWSLLYPEQEFQKK-SPLWKKFGFQSDDPTR 419

Query: 70  DFRGGGFISLENLLYLARNFPKSFQDLLRKQEGDRSVWEYPFAVAGVNIT---FMLIQML 126
           DFRG G + L NL++L ++     Q++L +   DR   +YPFAVAG+NI+   F + Q+ 
Sbjct: 420 DFRGMGIMGLLNLIHLVQHHNDWVQEILAQ---DR---DYPFAVAGINISNLIFEVFQIS 473

Query: 127 DLEAVKPRTMVG------ATFLKFLSENESAFDLLYCITFKLMDHQWLAMRASYMDFNTV 180
           +    +P           A        N+ AF+ LY + F L+DH W+ M A+YM F  V
Sbjct: 474 EDSLQQPWYSSFWSSSYMAMLCSMSRHNDHAFEELYFLIFNLLDHLWIQMNATYMMFPLV 533

Query: 181 MKSTRRQL 188
           +K  + QL
Sbjct: 534 IKKLKSQL 541

Dictyostelium discoideum (taxid: 44689)

>sp|Q54UP9|ELMOD_DICDI Ankyrin repeat and ELMO domain-containing protein D OS=Dictyostelium discoideum GN=elmoD PE=4 SV=1

 Score = 94.7 bits (234), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 54/176 (30%), Positives = 92/176 (52%), Gaps = 16/176 (9%)

Query: 14  LQRLQLRIDVAYDSSIPEHREALRALWNAAFPDEELRDLISEQWKEMGWQGKDPSTDFRG 73
           +Q L +     Y+   P H+  L  LW+  FP++  +    E W+ +G+Q KDPS+DFRG
Sbjct: 290 IQGLIMDSKTPYNKDEPSHQRLLETLWSTLFPNQVFQR-SHENWQIIGFQNKDPSSDFRG 348

Query: 74  GGFISLENLLYLARNFPKSFQDLLRKQEGDRSVWEYPFAVAGVNITFMLIQMLDLEAVKP 133
            G   L++L+YLA+N    F + L  ++ + +   YP+A +G+ +T  L+     E VKP
Sbjct: 349 MGLAGLKHLIYLAQNHKDMFMNPLINRQPEANY--YPYATSGIQVTSFLV-----ECVKP 401

Query: 134 -------RTMVGATFLKFLSENESAFDLLYCITFKLMDHQWLAMRASYMDFNTVMK 182
                    ++G  +   L E+E+A + +YC+  ++    W    A+YM F  V +
Sbjct: 402 INISANHSDVIGQIY-PILFESENALNEIYCVLMEIFGIVWKDWNATYMIFQKVFQ 456

Dictyostelium discoideum (taxid: 44689)

>sp|Q54VR8|ELMOB_DICDI ELMO domain-containing protein B OS=Dictyostelium discoideum GN=elmoB PE=4 SV=1

 Score = 93.2 bits (230), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 55/166 (33%), Positives = 90/166 (54%), Gaps = 21/166 (12%)

Query: 23  VAYDSSIPEHREALRALWNAAFPDEELRDLISEQWKEMGWQGKDPSTDFRGGGFISLENL 82
           + YD++  EH  +L  LW A  PD      +S++W  +G+QG DP+TDFRG G + L+NL
Sbjct: 116 IPYDNNNLEHEASLERLWEALLPDVRRSARLSKEWGTLGFQGMDPATDFRGMGILGLDNL 175

Query: 83  LYLARNFPKSFQDLLRKQEGDRSVWEYPFAVAGVNITFMLIQMLDLEAVKPRTMV----- 137
           +Y +    +  +++L+      S   YPFA+ G+NIT +++ ++D    KP   +     
Sbjct: 176 IYFSTQHSEDAREILK---NSNSKCCYPFAITGINITALVLNLID----KPHFKIYFFKN 228

Query: 138 GATFLKFLSENESAFDLLYCITFKLMDHQWLAMRA-SYMDFNTVMK 182
           G+T  +F   NE     LY + F   D  + + +  S M+FNT+ K
Sbjct: 229 GSTLTQF---NE-----LYSLVFISFDRFYQSKKPKSIMEFNTIKK 266

Dictyostelium discoideum (taxid: 44689)

>sp|Q8IZ81|ELMD2_HUMAN ELMO domain-containing protein 2 OS=Homo sapiens GN=ELMOD2 PE=1 SV=1

 Score = 92.8 bits (229), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 51/137 (37%), Positives = 74/137 (54%), Gaps = 12/137 (8%)

Query: 6   FWCCQEECLQRL----QLRIDV------AYDSSIPEHREALRALWNAAFPDEELRDLISE 55
           F  C + CL ++    QL +DV       YDS   +H E L  LWN   P ++L   IS+
Sbjct: 91  FKICMKMCLLQITGYKQLYLDVESVRKRPYDSDNLQHEELLMKLWNLLMPTKKLNARISK 150

Query: 56  QWKEMGWQGKDPSTDFRGGGFISLENLLYLARNFPKSFQDLLRKQEGDRSVWEYPFAVAG 115
           QW E+G+QG DP TDFRG G + L NL+Y + N+      +L +   +     Y +A+ G
Sbjct: 151 QWAEIGFQGDDPKTDFRGMGILGLINLVYFSENYTSEAHQILSR--SNHPKLGYSYAIVG 208

Query: 116 VNITFMLIQMLDLEAVK 132
           +N+T M   +L  EA+K
Sbjct: 209 INLTEMAYSLLKSEALK 225

Acts as a GTPase-activating protein (GAP) toward guanine nucleotide exchange factors like ARL2, ARL3, ARF1 and ARF6, but not for GTPases outside the Arf family. Regulates IFN-related antiviral responses.

Homo sapiens (taxid: 9606)

>sp|Q08DZ3|ELMD2_BOVIN ELMO domain-containing protein 2 OS=Bos taurus GN=ELMOD2 PE=1 SV=1

 Score = 90.9 bits (224), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 63/204 (30%), Positives = 98/204 (48%), Gaps = 17/204 (8%)

Query: 6   FWCCQEECLQRL----QLRIDV------AYDSSIPEHREALRALWNAAFPDEELRDLISE 55
           F  C + CL ++    QL +DV       YDS   +H + L  LWN   P ++L+  IS+
Sbjct: 91  FKICMKACLLQISGYKQLYLDVESVRKKPYDSDNLQHEKLLIKLWNLLMPTKKLKARISK 150

Query: 56  QWKEMGWQGKDPSTDFRGGGFISLENLLYLARNFPKSFQDLLRKQEGDRSVWEYPFAVAG 115
           QW ++G+QG DP TDFRG G + L NL+Y + N+      +L +    +    Y +A+ G
Sbjct: 151 QWADIGFQGDDPKTDFRGMGILGLINLVYFSENYTSEAHQILSRSNHPK--LGYSYAIVG 208

Query: 116 VNITFMLIQMLDLEAVKPRTMVGATFLKFLSENESAFDLLYCITFKLMDHQWLAMRA-SY 174
           +N+T M   +L  EA+K        F+  +   E  F   YC      D  W   +  S 
Sbjct: 209 INLTEMAYSLLKSEALKFHLY---NFVPGIPTMEH-FHQFYCYLVYEFDKFWFEEKPESI 264

Query: 175 MDFNTVMKSTRRQLERELLLEDVT 198
           M FN   +    +++  LL  +V+
Sbjct: 265 MYFNVYREKFHEKIKGLLLDCNVS 288

Acts as a GTPase-activating protein (GAP) toward guanine nucleotide exchange factors like ARL2, ARL3, ARF1 and ARF6, but not for GTPases outside the Arf family.

Bos taurus (taxid: 9913)

>sp|Q499U2|ELMO3_RAT Engulfment and cell motility protein 3 OS=Rattus norvegicus GN=Elmo3 PE=2 SV=1

 Score = 90.5 bits (223), Expect = 8e-18,   Method: Compositional matrix adjust.
 Identities = 57/207 (27%), Positives = 99/207 (47%), Gaps = 15/207 (7%)

Query: 5   HFWCCQEECLQRLQLRIDVAYDSSIPEHREALRALWNAAF-PDEEL----------RDLI 53
           H +  Q   L  L+ R+    D    E RE L+AL  AAF PD E           R L 
Sbjct: 281 HLYVLQALTLGLLEPRMRTPLDPYSQEQREQLQALRQAAFEPDGESLGTGLSADRRRSLC 340

Query: 54  SEQWKEMGWQGKDPSTDFR--GGGFISLENLLYLARNFPKSFQDLLRKQEGDRSVWEYPF 111
             +++++G+    P+ D      G ++L+N+LY +R+ P ++   + +        E PF
Sbjct: 341 VREFRKLGFSNSSPAQDLERVPPGLLALDNMLYFSRHAPSAYSRFVLENSSREDKHECPF 400

Query: 112 AVAGVNITFMLIQMLDLEAVKPRTMVGATFLKFLSENESAFDLLYCITFKLMDHQWLAMR 171
           A + + +T +L ++L +   +P +     F       + +F  L+C+  +L++  W  MR
Sbjct: 401 ARSSIQLTVLLCELLHVG--EPCSETAQDFSPMFFSQDHSFHELFCVAIQLLNKTWKEMR 458

Query: 172 ASYMDFNTVMKSTRRQLERELLLEDVT 198
           A+  DF+ VM+  R QL R L L+  +
Sbjct: 459 ATQEDFDKVMQVVREQLARTLALKPTS 485

Involved in cytoskeletal rearrangements required for phagocytosis of apoptotic cells and cell motility. Acts in assocation with DOCK1 and CRK. Was initially proposed to be required in complex with DOCK1 to activate Rac Rho small GTPases. May enhance the guanine nucleotide exchange factor (GEF) activity of DOCK1.

Rattus norvegicus (taxid: 10116)

>sp|A6QR40|ELMO3_BOVIN Engulfment and cell motility protein 3 OS=Bos taurus GN=ELMO3 PE=2 SV=1

 Score = 88.2 bits (217), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 56/204 (27%), Positives = 99/204 (48%), Gaps = 15/204 (7%)

Query: 5   HFWCCQEECLQRLQLRIDVAYDSSIPEHREALRALWNAAF-PDEE----------LRDLI 53
           H +  Q   L  L+ R+    D    E RE L+AL  AAF P+ E           R L 
Sbjct: 281 HLYVLQALMLGLLEPRMRTPLDPYSQEQREQLQALRQAAFEPEGESVGAGLSADRRRSLC 340

Query: 54  SEQWKEMGWQGKDPSTDFR--GGGFISLENLLYLARNFPKSFQDLLRKQEGDRSVWEYPF 111
           + +++++G+   +P+ D      G ++L+N+LY +R  P ++   + +        E PF
Sbjct: 341 AREFRKLGFSNSNPAQDLERVPPGLLALDNMLYFSRQAPSAYSRFVLENSSREDKHECPF 400

Query: 112 AVAGVNITFMLIQMLDLEAVKPRTMVGATFLKFLSENESAFDLLYCITFKLMDHQWLAMR 171
           A + + +T +L  +L +   +P +     F       + +F  L+C++ +L++  W  MR
Sbjct: 401 ARSSIQLTVLLCDLLHVG--EPCSETAQDFSPMFFGQDQSFHELFCVSIQLLNKTWKEMR 458

Query: 172 ASYMDFNTVMKSTRRQLERELLLE 195
           A+  DF+ VM+  R QL R L L+
Sbjct: 459 ATQEDFDKVMQVVREQLARTLALK 482

Involved in cytoskeletal rearrangements required for phagocytosis of apoptotic cells and cell motility. Acts in assocation with DOCK1 and CRK. Was initially proposed to be required in complex with DOCK1 to activate Rac Rho small GTPases. May enhance the guanine nucleotide exchange factor (GEF) activity of DOCK1.

Bos taurus (taxid: 9913)

>sp|Q96BJ8|ELMO3_HUMAN Engulfment and cell motility protein 3 OS=Homo sapiens GN=ELMO3 PE=2 SV=3

 Score = 88.2 bits (217), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 55/207 (26%), Positives = 97/207 (46%), Gaps = 15/207 (7%)

Query: 5   HFWCCQEECLQRLQLRIDVAYDSSIPEHREALRALWNAAFPDE-----------ELRDLI 53
           H +  Q   L  L+ R+    D    E RE L+ L  AAF  E             R L 
Sbjct: 281 HLYVLQALMLGLLEPRMRTPLDPYSQEQREQLQVLRQAAFEVEGESSGAGLSADRRRSLC 340

Query: 54  SEQWKEMGWQGKDPSTDFR--GGGFISLENLLYLARNFPKSFQDLLRKQEGDRSVWEYPF 111
           + +++++G+   +P+ D      G ++L+N+LY +RN P ++   + +        E PF
Sbjct: 341 AREFRKLGFSNSNPAQDLERVPPGLLALDNMLYFSRNAPSAYSRFVLENSSREDKHECPF 400

Query: 112 AVAGVNITFMLIQMLDLEAVKPRTMVGATFLKFLSENESAFDLLYCITFKLMDHQWLAMR 171
           A   + +T +L ++L +   +P +     F       + +F  L+C+  +L++  W  MR
Sbjct: 401 ARGSIQLTVLLCELLRVG--EPCSETAQDFSPMFFGQDQSFHELFCVGIQLLNKTWKEMR 458

Query: 172 ASYMDFNTVMKSTRRQLERELLLEDVT 198
           A+  DF+ VM+  R QL R L L+  +
Sbjct: 459 ATQEDFDKVMQVVREQLARTLALKPTS 485

Involved in cytoskeletal rearrangements required for phagocytosis of apoptotic cells and cell motility. Acts in assocation with DOCK1 and CRK. Was initially proposed to be required in complex with DOCK1 to activate Rac Rho small GTPases. May enhance the guanine nucleotide exchange factor (GEF) activity of DOCK1.

Homo sapiens (taxid: 9606)

>sp|Q8BGF6|ELMD2_MOUSE ELMO domain-containing protein 2 OS=Mus musculus GN=Elmod2 PE=2 SV=1

 Score = 87.8 bits (216), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 48/137 (35%), Positives = 73/137 (53%), Gaps = 12/137 (8%)

Query: 6   FWCCQEECLQRL----QLRIDV------AYDSSIPEHREALRALWNAAFPDEELRDLISE 55
           F  C   CL ++    QL  DV       YDS+  +H + L  LW+   P ++L   IS+
Sbjct: 91  FQICMRTCLLQITGYKQLYHDVENVRKKPYDSANAQHEKMLLKLWSLLMPTKKLTARISK 150

Query: 56  QWKEMGWQGKDPSTDFRGGGFISLENLLYLARNFPKSFQDLLRKQEGDRSVWEYPFAVAG 115
           QW ++G+QG DP TDFRG G + L NL+Y + N+      +L +    +    Y +A+ G
Sbjct: 151 QWADIGFQGDDPKTDFRGMGILGLINLVYFSENYTSEAHQILSRSNHPK--LGYSYAIVG 208

Query: 116 VNITFMLIQMLDLEAVK 132
           +N+T M   +L  EA+K
Sbjct: 209 INLTEMAYSLLKSEALK 225

Acts as a GTPase-activating protein (GAP) toward guanine nucleotide exchange factors like ARL2, ARL3, ARF1 and ARF6, but not for GTPases outside the Arf family.

Mus musculus (taxid: 10090)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	211
255571033	267	ELMO domain-containing protein, putative	0.990	0.782	0.889	1e-105
297734628	287	unnamed protein product [Vitis vinifera]	0.990	0.728	0.875	1e-103
225453354	267	PREDICTED: ELMO domain-containing protei	0.990	0.782	0.875	1e-103
356568581	266	PREDICTED: ELMO domain-containing protei	0.990	0.785	0.851	1e-102
356531822	266	PREDICTED: ELMO domain-containing protei	0.990	0.785	0.846	1e-102
449445499	267	PREDICTED: ELMO domain-containing protei	0.990	0.782	0.846	1e-101
356520760	262	PREDICTED: ELMO domain-containing protei	0.990	0.797	0.846	1e-101
356520762	247	PREDICTED: ELMO domain-containing protei	0.990	0.846	0.846	1e-101
224137120	267	predicted protein [Populus trichocarpa]	0.957	0.756	0.876	1e-101
224063629	267	predicted protein [Populus trichocarpa]	0.990	0.782	0.846	1e-101

>gi|255571033|ref|XP_002526467.1| ELMO domain-containing protein, putative [Ricinus communis] gi|223534142|gb|EEF35858.1| ELMO domain-containing protein, putative [Ricinus communis]

 Score =  387 bits (995), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 186/209 (88%), Positives = 196/209 (93%)

Query: 3   NFHFWCCQEECLQRLQLRIDVAYDSSIPEHREALRALWNAAFPDEELRDLISEQWKEMGW 62
           +F     QEECLQRLQ RIDVAYDSSIPEH+EALRALWNAAFP+EELR LISEQWKEMGW
Sbjct: 59  SFDLTLTQEECLQRLQSRIDVAYDSSIPEHQEALRALWNAAFPEEELRGLISEQWKEMGW 118

Query: 63  QGKDPSTDFRGGGFISLENLLYLARNFPKSFQDLLRKQEGDRSVWEYPFAVAGVNITFML 122
           QGKDPSTDFRGGGFISLENLL+ A+NFP SFQDLL+K+EGDRSVWEYPFAVAGVNITFML
Sbjct: 119 QGKDPSTDFRGGGFISLENLLFFAKNFPTSFQDLLQKREGDRSVWEYPFAVAGVNITFML 178

Query: 123 IQMLDLEAVKPRTMVGATFLKFLSENESAFDLLYCITFKLMDHQWLAMRASYMDFNTVMK 182
           IQMLDLEAVKPRTMVGA FLKFL+ENESAFDLLYCITFKLMDHQWL M ASYMDFNTVMK
Sbjct: 179 IQMLDLEAVKPRTMVGAVFLKFLTENESAFDLLYCITFKLMDHQWLNMHASYMDFNTVMK 238

Query: 183 STRRQLERELLLEDVTRLEDLPSYSLLSR 211
           STRRQLERELLLED+TRLEDLPSY LL+R
Sbjct: 239 STRRQLERELLLEDITRLEDLPSYGLLTR 267

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297734628|emb|CBI16679.3| unnamed protein product [Vitis vinifera]

 Score =  379 bits (974), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 183/209 (87%), Positives = 197/209 (94%)

Query: 3   NFHFWCCQEECLQRLQLRIDVAYDSSIPEHREALRALWNAAFPDEELRDLISEQWKEMGW 62
           +F     QEECLQRLQ RI+V+YDSSI EH+EALRALWNA+FP+EELRDLISEQWKEMGW
Sbjct: 79  SFDLTPAQEECLQRLQSRIEVSYDSSISEHQEALRALWNASFPEEELRDLISEQWKEMGW 138

Query: 63  QGKDPSTDFRGGGFISLENLLYLARNFPKSFQDLLRKQEGDRSVWEYPFAVAGVNITFML 122
           QGKDPSTDFRGGGFISLENLL+ ARN+PKSFQDLLRKQEGDR++WEYPFAVAGVNITFML
Sbjct: 139 QGKDPSTDFRGGGFISLENLLFFARNYPKSFQDLLRKQEGDRALWEYPFAVAGVNITFML 198

Query: 123 IQMLDLEAVKPRTMVGATFLKFLSENESAFDLLYCITFKLMDHQWLAMRASYMDFNTVMK 182
           IQMLDLEAVKPR+M GA FLKFLSENESAFDLLYCITFKLMD+QWLAM ASYMDFNTVMK
Sbjct: 199 IQMLDLEAVKPRSMAGAIFLKFLSENESAFDLLYCITFKLMDNQWLAMHASYMDFNTVMK 258

Query: 183 STRRQLERELLLEDVTRLEDLPSYSLLSR 211
           STR QLERELLLEDV+RLEDLPSYSLL+R
Sbjct: 259 STRCQLERELLLEDVSRLEDLPSYSLLTR 287

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225453354|ref|XP_002271650.1| PREDICTED: ELMO domain-containing protein A [Vitis vinifera]

 Score =  379 bits (974), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 183/209 (87%), Positives = 197/209 (94%)

Query: 3   NFHFWCCQEECLQRLQLRIDVAYDSSIPEHREALRALWNAAFPDEELRDLISEQWKEMGW 62
           +F     QEECLQRLQ RI+V+YDSSI EH+EALRALWNA+FP+EELRDLISEQWKEMGW
Sbjct: 59  SFDLTPAQEECLQRLQSRIEVSYDSSISEHQEALRALWNASFPEEELRDLISEQWKEMGW 118

Query: 63  QGKDPSTDFRGGGFISLENLLYLARNFPKSFQDLLRKQEGDRSVWEYPFAVAGVNITFML 122
           QGKDPSTDFRGGGFISLENLL+ ARN+PKSFQDLLRKQEGDR++WEYPFAVAGVNITFML
Sbjct: 119 QGKDPSTDFRGGGFISLENLLFFARNYPKSFQDLLRKQEGDRALWEYPFAVAGVNITFML 178

Query: 123 IQMLDLEAVKPRTMVGATFLKFLSENESAFDLLYCITFKLMDHQWLAMRASYMDFNTVMK 182
           IQMLDLEAVKPR+M GA FLKFLSENESAFDLLYCITFKLMD+QWLAM ASYMDFNTVMK
Sbjct: 179 IQMLDLEAVKPRSMAGAIFLKFLSENESAFDLLYCITFKLMDNQWLAMHASYMDFNTVMK 238

Query: 183 STRRQLERELLLEDVTRLEDLPSYSLLSR 211
           STR QLERELLLEDV+RLEDLPSYSLL+R
Sbjct: 239 STRCQLERELLLEDVSRLEDLPSYSLLTR 267

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356568581|ref|XP_003552489.1| PREDICTED: ELMO domain-containing protein A-like [Glycine max]

 Score =  375 bits (963), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 178/209 (85%), Positives = 194/209 (92%)

Query: 3   NFHFWCCQEECLQRLQLRIDVAYDSSIPEHREALRALWNAAFPDEELRDLISEQWKEMGW 62
           +F     QEECLQRLQ RID+ YD SIPEH++ALRALW+AAFP+EEL  LISEQWK MGW
Sbjct: 58  SFDLTPAQEECLQRLQNRIDIPYDGSIPEHQDALRALWSAAFPEEELHGLISEQWKNMGW 117

Query: 63  QGKDPSTDFRGGGFISLENLLYLARNFPKSFQDLLRKQEGDRSVWEYPFAVAGVNITFML 122
           QGKDPSTDFRGGGFISLENLL+ ARNFPKSFQDLLRKQEGDRSVWEYPFAVAGVNITFML
Sbjct: 118 QGKDPSTDFRGGGFISLENLLFFARNFPKSFQDLLRKQEGDRSVWEYPFAVAGVNITFML 177

Query: 123 IQMLDLEAVKPRTMVGATFLKFLSENESAFDLLYCITFKLMDHQWLAMRASYMDFNTVMK 182
           IQMLDLEAVKPRT+VGATFLKFL+EN+SAFDLLYCITFK+MD QWL+MRASYMDFNTVMK
Sbjct: 178 IQMLDLEAVKPRTLVGATFLKFLAENDSAFDLLYCITFKMMDQQWLSMRASYMDFNTVMK 237

Query: 183 STRRQLERELLLEDVTRLEDLPSYSLLSR 211
           STRRQLE+ELLLED+ RLED+PSY LL+R
Sbjct: 238 STRRQLEKELLLEDIMRLEDVPSYKLLTR 266

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356531822|ref|XP_003534475.1| PREDICTED: ELMO domain-containing protein A-like [Glycine max]

 Score =  375 bits (963), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 177/209 (84%), Positives = 194/209 (92%)

Query: 3   NFHFWCCQEECLQRLQLRIDVAYDSSIPEHREALRALWNAAFPDEELRDLISEQWKEMGW 62
           +F     QEECLQRLQ RID+ YD S+PEH++ALR LWNAAFP+EEL  LISEQWK+MGW
Sbjct: 58  SFDLTPAQEECLQRLQSRIDIPYDGSVPEHQDALRDLWNAAFPEEELHGLISEQWKDMGW 117

Query: 63  QGKDPSTDFRGGGFISLENLLYLARNFPKSFQDLLRKQEGDRSVWEYPFAVAGVNITFML 122
           QGKDPSTDFRGGGFISLENLL+ ARNFPKSFQDLLRKQEGDRSVWEYPFAVAGVNITFML
Sbjct: 118 QGKDPSTDFRGGGFISLENLLFFARNFPKSFQDLLRKQEGDRSVWEYPFAVAGVNITFML 177

Query: 123 IQMLDLEAVKPRTMVGATFLKFLSENESAFDLLYCITFKLMDHQWLAMRASYMDFNTVMK 182
           IQMLDLEAVKPRT+VGATFLKFL+EN+SAFDLLYCITFK+MD QWL+MRASYMDFNTVMK
Sbjct: 178 IQMLDLEAVKPRTLVGATFLKFLAENDSAFDLLYCITFKMMDQQWLSMRASYMDFNTVMK 237

Query: 183 STRRQLERELLLEDVTRLEDLPSYSLLSR 211
           STRRQLE+ELLLED+ RLED+PSY LL+R
Sbjct: 238 STRRQLEKELLLEDIMRLEDVPSYKLLTR 266

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449445499|ref|XP_004140510.1| PREDICTED: ELMO domain-containing protein A-like [Cucumis sativus]

 Score =  374 bits (960), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 177/209 (84%), Positives = 195/209 (93%)

Query: 3   NFHFWCCQEECLQRLQLRIDVAYDSSIPEHREALRALWNAAFPDEELRDLISEQWKEMGW 62
           +F     QEECL RLQ RID+AYDSSI EH+EALR LWN AFP+EELR LISEQWKEMGW
Sbjct: 59  SFDLTPAQEECLLRLQNRIDIAYDSSITEHQEALRTLWNVAFPEEELRGLISEQWKEMGW 118

Query: 63  QGKDPSTDFRGGGFISLENLLYLARNFPKSFQDLLRKQEGDRSVWEYPFAVAGVNITFML 122
           QGKDPSTDFRGGGFISLENLL+ A+NFPKSFQDLLRKQEGDRS+WEYPFAVAGVNITFML
Sbjct: 119 QGKDPSTDFRGGGFISLENLLFFAKNFPKSFQDLLRKQEGDRSLWEYPFAVAGVNITFML 178

Query: 123 IQMLDLEAVKPRTMVGATFLKFLSENESAFDLLYCITFKLMDHQWLAMRASYMDFNTVMK 182
           IQMLDLEAVKPRT+VGATFLKFL+EN+SAFDLLYCITFKLMDH+WLAM ASYMDFNTVMK
Sbjct: 179 IQMLDLEAVKPRTLVGATFLKFLAENDSAFDLLYCITFKLMDHEWLAMHASYMDFNTVMK 238

Query: 183 STRRQLERELLLEDVTRLEDLPSYSLLSR 211
           +TRRQLE+ELL+ED++RLE+LPSY LL+R
Sbjct: 239 ATRRQLEKELLIEDISRLEELPSYGLLNR 267

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356520760|ref|XP_003529028.1| PREDICTED: ELMO domain-containing protein A-like isoform 1 [Glycine max]

 Score =  372 bits (954), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 177/209 (84%), Positives = 190/209 (90%)

Query: 3   NFHFWCCQEECLQRLQLRIDVAYDSSIPEHREALRALWNAAFPDEELRDLISEQWKEMGW 62
            F     QEECLQR+Q RIDV YDSSI EH++ALRALWNAAFP+EEL  LISEQWKEMGW
Sbjct: 54  TFDLTLAQEECLQRIQRRIDVPYDSSIIEHQDALRALWNAAFPEEELHGLISEQWKEMGW 113

Query: 63  QGKDPSTDFRGGGFISLENLLYLARNFPKSFQDLLRKQEGDRSVWEYPFAVAGVNITFML 122
           QGKDPSTDFRGGGFISLEN L+ ARNFPKSFQDLLRKQEGDRSVWEYPFAVAGVNIT+ML
Sbjct: 114 QGKDPSTDFRGGGFISLENFLFFARNFPKSFQDLLRKQEGDRSVWEYPFAVAGVNITYML 173

Query: 123 IQMLDLEAVKPRTMVGATFLKFLSENESAFDLLYCITFKLMDHQWLAMRASYMDFNTVMK 182
           IQMLDLEAVKPR +VGATFLKFL+ENESAFDLLYCITFKLMDHQWL+M ASYMDFN VMK
Sbjct: 174 IQMLDLEAVKPRNLVGATFLKFLAENESAFDLLYCITFKLMDHQWLSMHASYMDFNAVMK 233

Query: 183 STRRQLERELLLEDVTRLEDLPSYSLLSR 211
            TRRQLE+ELL+ED+ +LEDLPSY LLSR
Sbjct: 234 ETRRQLEKELLVEDIAQLEDLPSYKLLSR 262

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356520762|ref|XP_003529029.1| PREDICTED: ELMO domain-containing protein A-like isoform 2 [Glycine max]

 Score =  372 bits (954), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 177/209 (84%), Positives = 190/209 (90%)

Query: 3   NFHFWCCQEECLQRLQLRIDVAYDSSIPEHREALRALWNAAFPDEELRDLISEQWKEMGW 62
            F     QEECLQR+Q RIDV YDSSI EH++ALRALWNAAFP+EEL  LISEQWKEMGW
Sbjct: 39  TFDLTLAQEECLQRIQRRIDVPYDSSIIEHQDALRALWNAAFPEEELHGLISEQWKEMGW 98

Query: 63  QGKDPSTDFRGGGFISLENLLYLARNFPKSFQDLLRKQEGDRSVWEYPFAVAGVNITFML 122
           QGKDPSTDFRGGGFISLEN L+ ARNFPKSFQDLLRKQEGDRSVWEYPFAVAGVNIT+ML
Sbjct: 99  QGKDPSTDFRGGGFISLENFLFFARNFPKSFQDLLRKQEGDRSVWEYPFAVAGVNITYML 158

Query: 123 IQMLDLEAVKPRTMVGATFLKFLSENESAFDLLYCITFKLMDHQWLAMRASYMDFNTVMK 182
           IQMLDLEAVKPR +VGATFLKFL+ENESAFDLLYCITFKLMDHQWL+M ASYMDFN VMK
Sbjct: 159 IQMLDLEAVKPRNLVGATFLKFLAENESAFDLLYCITFKLMDHQWLSMHASYMDFNAVMK 218

Query: 183 STRRQLERELLLEDVTRLEDLPSYSLLSR 211
            TRRQLE+ELL+ED+ +LEDLPSY LLSR
Sbjct: 219 ETRRQLEKELLVEDIAQLEDLPSYKLLSR 247

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224137120|ref|XP_002327028.1| predicted protein [Populus trichocarpa] gi|222835343|gb|EEE73778.1| predicted protein [Populus trichocarpa]

 Score =  372 bits (954), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 177/202 (87%), Positives = 192/202 (95%)

Query: 10  QEECLQRLQLRIDVAYDSSIPEHREALRALWNAAFPDEELRDLISEQWKEMGWQGKDPST 69
           QEECLQRLQ RIDVAYDSS+PEH+EAL+ALWNAAFP+EEL  LISEQWKEMGWQGKDPST
Sbjct: 66  QEECLQRLQSRIDVAYDSSVPEHQEALKALWNAAFPEEELHGLISEQWKEMGWQGKDPST 125

Query: 70  DFRGGGFISLENLLYLARNFPKSFQDLLRKQEGDRSVWEYPFAVAGVNITFMLIQMLDLE 129
           DFRGGGFISLENLL+ ARNFP SFQDLL+K+EGDRSVWEYPFAVAGVNITFMLIQMLDLE
Sbjct: 126 DFRGGGFISLENLLFFARNFPTSFQDLLQKREGDRSVWEYPFAVAGVNITFMLIQMLDLE 185

Query: 130 AVKPRTMVGATFLKFLSENESAFDLLYCITFKLMDHQWLAMRASYMDFNTVMKSTRRQLE 189
           AVKPRT+VGATFLKFL E++SAFD LYCITFKLMDH+WL MRASYMDFN VMKSTRRQLE
Sbjct: 186 AVKPRTLVGATFLKFLEEDDSAFDRLYCITFKLMDHEWLDMRASYMDFNAVMKSTRRQLE 245

Query: 190 RELLLEDVTRLEDLPSYSLLSR 211
           RELL ED+TRLE+LPSY+LL+R
Sbjct: 246 RELLSEDITRLEELPSYTLLTR 267

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224063629|ref|XP_002301236.1| predicted protein [Populus trichocarpa] gi|222842962|gb|EEE80509.1| predicted protein [Populus trichocarpa]

 Score =  371 bits (953), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 177/209 (84%), Positives = 193/209 (92%)

Query: 3   NFHFWCCQEECLQRLQLRIDVAYDSSIPEHREALRALWNAAFPDEELRDLISEQWKEMGW 62
           +F     QEECLQRLQ RIDV YDSS+ +H+EAL+ LWNAAFP+EEL  LISEQWKEMGW
Sbjct: 59  SFDLTPVQEECLQRLQSRIDVPYDSSVLDHQEALKTLWNAAFPEEELHGLISEQWKEMGW 118

Query: 63  QGKDPSTDFRGGGFISLENLLYLARNFPKSFQDLLRKQEGDRSVWEYPFAVAGVNITFML 122
           QGKDPSTDFRGGGFISLENLL+ ARNFPKSFQDLL+K+EGDRSVWEYPFAVAGVNITFML
Sbjct: 119 QGKDPSTDFRGGGFISLENLLFFARNFPKSFQDLLQKREGDRSVWEYPFAVAGVNITFML 178

Query: 123 IQMLDLEAVKPRTMVGATFLKFLSENESAFDLLYCITFKLMDHQWLAMRASYMDFNTVMK 182
           IQMLDLEAVKPR +VGATFLKFL+EN+SAFDLLYCITFKLMDH+WL MRASYMDFN VMK
Sbjct: 179 IQMLDLEAVKPRALVGATFLKFLAENDSAFDLLYCITFKLMDHEWLTMRASYMDFNAVMK 238

Query: 183 STRRQLERELLLEDVTRLEDLPSYSLLSR 211
           STRRQLERELL ED+TRLEDLPSY+LL+R
Sbjct: 239 STRRQLERELLSEDITRLEDLPSYTLLTR 267

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	211
TAIR|locus:2042456	266	AT2G44770 "AT2G44770" [Arabido	0.957	0.759	0.806	1.8e-85
TAIR|locus:2081947	266	AT3G60260 "AT3G60260" [Arabido	0.990	0.785	0.770	1e-84
TAIR|locus:2019544	281	AT1G67400 [Arabidopsis thalian	0.952	0.715	0.626	5.8e-66
TAIR|locus:2020753	265	AT1G03620 "AT1G03620" [Arabido	0.947	0.754	0.597	1.8e-62
TAIR|locus:2096389	323	AT3G03610 "AT3G03610" [Arabido	0.947	0.619	0.59	3e-62
TAIR|locus:2102276	213	AT3G43400 "AT3G43400" [Arabido	0.710	0.704	0.602	1.3e-45
DICTYBASE|DDB_G0278051	977	elmoA "engulfment and cell mot	0.530	0.114	0.407	4.4e-24
DICTYBASE|DDB_G0282949	618	elmoC "engulfment and cell mot	0.786	0.268	0.340	2.9e-22
DICTYBASE|DDB_G0280179	284	elmoB "engulfment and cell mot	0.710	0.528	0.335	4.4e-20
UNIPROTKB|J9P4T8	293	ELMOD2 "Uncharacterized protei	0.791	0.569	0.326	3.1e-19

TAIR|locus:2042456 AT2G44770 "AT2G44770" [Arabidopsis thaliana (taxid:3702)]

 Score = 855 (306.0 bits), Expect = 1.8e-85, P = 1.8e-85
 Identities = 163/202 (80%), Positives = 176/202 (87%)

Query:    10 QEECLQRLQLRIDVAYDSSIPEHREALRALWNAAFPDEELRDLISEQWKEMGWQGKDPST 69
             QEECLQ LQ RIDVAYDS+IP H+EALR LW  +FP+EEL  LISEQWKEMGWQGKDPST
Sbjct:    65 QEECLQSLQNRIDVAYDSTIPLHQEALRELWKLSFPEEELHGLISEQWKEMGWQGKDPST 124

Query:    70 DFRGGGFISLENLLYLARNFPKSFQDLLRKQEGDRSVWEYPFAVAGVNITFMLIQMLDLE 129
             DFRGGGFISLENLLY ARNF KSFQDLLRKQ GDRSVWEYPFAVAG+N+TFMLIQMLDLE
Sbjct:   125 DFRGGGFISLENLLYFARNFQKSFQDLLRKQVGDRSVWEYPFAVAGINLTFMLIQMLDLE 184

Query:   130 AVKPRTMVGATFLKFLSENESAFDLLYCITFKLMDHQWLAMRASYMDFNTVMKSTXXXXX 189
             AVKPRT+VGATFLKFLSENESAFDLLYCI FKLMD QWL+MRASYM+FNTVMKST     
Sbjct:   185 AVKPRTIVGATFLKFLSENESAFDLLYCIAFKLMDQQWLSMRASYMEFNTVMKSTRRQLE 244

Query:   190 XXXXXXDVTRLEDLPSYSLLSR 211
                   D+  LEDLPSY+LL++
Sbjct:   245 RELMLEDIMHLEDLPSYALLNQ 266

GO:0003674 "molecular_function" evidence=ND

GO:0005737 "cytoplasm" evidence=ISM

GO:0005856 "cytoskeleton" evidence=IEA

GO:0006909 "phagocytosis" evidence=IEA

TAIR|locus:2081947 AT3G60260 "AT3G60260" [Arabidopsis thaliana (taxid:3702)]

 Score = 848 (303.6 bits), Expect = 1.0e-84, P = 1.0e-84
 Identities = 161/209 (77%), Positives = 177/209 (84%)

Query:     3 NFHFWCCQEECLQRLQLRIDVAYDSSIPEHREALRALWNAAFPDEELRDLISEQWKEMGW 62
             +F     QEECLQRLQ RIDVAYDSSIP+H+EAL+ LW  AFP+EEL  ++S+QWKEMGW
Sbjct:    58 SFDLTPAQEECLQRLQSRIDVAYDSSIPQHQEALKDLWKLAFPEEELHGIVSDQWKEMGW 117

Query:    63 QGKDPSTDFRGGGFISLENLLYLARNFPKSFQDLLRKQEGDRSVWEYPFAVAGVNITFML 122
             QGKDPSTDFRGGGFISLENLLY AR FPKSF  LLRKQ GDRSVWEYPFAVAG+NITFML
Sbjct:   118 QGKDPSTDFRGGGFISLENLLYFARKFPKSFHGLLRKQVGDRSVWEYPFAVAGINITFML 177

Query:   123 IQMLDLEAVKPRTMVGATFLKFLSENESAFDLLYCITFKLMDHQWLAMRASYMDFNTVMK 182
             IQMLDLEAVKPR++VG TFL+FLS NESAFDLLYCI FKLMD QWL+MRASYM+FNTVMK
Sbjct:   178 IQMLDLEAVKPRSIVGETFLRFLSVNESAFDLLYCIAFKLMDQQWLSMRASYMEFNTVMK 237

Query:   183 STXXXXXXXXXXXDVTRLEDLPSYSLLSR 211
             ST           D+T LEDLPSYSLLS+
Sbjct:   238 STRRQLEREIMIEDITSLEDLPSYSLLSQ 266

GO:0003674 "molecular_function" evidence=ND

GO:0005737 "cytoplasm" evidence=ISM

GO:0005856 "cytoskeleton" evidence=IEA

GO:0006909 "phagocytosis" evidence=IEA

TAIR|locus:2019544 AT1G67400 [Arabidopsis thaliana (taxid:3702)]

 Score = 671 (241.3 bits), Expect = 5.8e-66, P = 5.8e-66
 Identities = 126/201 (62%), Positives = 156/201 (77%)

Query:    10 QEECLQRLQLRIDVAYDSSIPEHREALRALWNAAFPDEELRDLISEQWKEMGWQGKDPST 69
             QEE L+RL+ R+   YD+S P+H++ALRALW+A +PDE+L+DLIS+QWK MGWQGKDPST
Sbjct:    81 QEERLKRLRKRMKNYYDASRPDHQDALRALWSATYPDEKLQDLISDQWKNMGWQGKDPST 140

Query:    70 DFRGGGFISLENLLYLARNFPKSFQDLLRKQEGDRSVWEYPFAVAGVNITFMLIQMLDLE 129
             DFRG GFISLENLL+ A+ F  SFQ LL KQ G R+ WEYPFAVAGVNITFM++QMLDLE
Sbjct:   141 DFRGAGFISLENLLFFAKTFSTSFQRLLNKQGGKRAAWEYPFAVAGVNITFMIMQMLDLE 200

Query:   130 AVKPRTMVGATFLKFLSENESAFDLLYCITFKLMDHQWLAMRASYMDFNTVMKSTXXXXX 189
             A KPR+ +   FL+ LSE+E AFDLLYC+ F +MD QWL   A+YM+FN V++ T     
Sbjct:   201 ASKPRSFIRLVFLQMLSESEWAFDLLYCVAFVVMDKQWLDKNATYMEFNDVLRCTRGQLE 260

Query:   190 XXXXXXDVTRLEDLPSYSLLS 210
                   DV R+ED+PS+SLLS
Sbjct:   261 RELMMDDVFRIEDMPSFSLLS 281

GO:0005856 "cytoskeleton" evidence=IEA

GO:0006909 "phagocytosis" evidence=IEA

TAIR|locus:2020753 AT1G03620 "AT1G03620" [Arabidopsis thaliana (taxid:3702)]

 Score = 638 (229.6 bits), Expect = 1.8e-62, P = 1.8e-62
 Identities = 120/201 (59%), Positives = 153/201 (76%)

Query:    10 QEECLQRLQLRIDVAYDSSIPEHREALRALWNAAFPDEELRDLISEQWKEMGWQGKDPST 69
             QEE LQRLQ R+ V +D + P+H+E+L+ALWN AFP+  L  L++EQWKEMGWQG +PST
Sbjct:    63 QEERLQRLQDRMVVPFDETRPDHQESLKALWNVAFPNVHLTGLVTEQWKEMGWQGPNPST 122

Query:    70 DFRGGGFISLENLLYLARNFPKSFQDLLRKQEGDRSVWEYPFAVAGVNITFMLIQMLDLE 129
             DFRG GFI+LENLL+ AR +P  F+ LL KQ GDR+ WEYPFAVAG+NI+FMLIQMLDL+
Sbjct:   123 DFRGCGFIALENLLFSARTYPVCFRRLLLKQRGDRAKWEYPFAVAGINISFMLIQMLDLQ 182

Query:   130 A-VKPRTMVGATFLKFLSENESAFDLLYCITFKLMDHQWLAMRASYMDFNTVMKSTXXXX 188
                KP+ + G  FLK L E+E AFD+LYCI F +MD QWLAM ASYM+FN V+++T    
Sbjct:   183 NNPKPKCLPGMNFLKLLEEDERAFDVLYCIAFAMMDAQWLAMHASYMEFNEVLQATRNQL 242

Query:   189 XXXXXXXDVTRLEDLPSYSLL 209
                    D+ R++DLP+Y+LL
Sbjct:   243 ERELSLDDIHRIQDLPAYNLL 263

GO:0003674 "molecular_function" evidence=ND

GO:0005737 "cytoplasm" evidence=ISM

GO:0005856 "cytoskeleton" evidence=IEA

GO:0006909 "phagocytosis" evidence=IEA

GO:0009855 "determination of bilateral symmetry" evidence=RCA

GO:0009944 "polarity specification of adaxial/abaxial axis" evidence=RCA

GO:0010014 "meristem initiation" evidence=RCA

GO:0010075 "regulation of meristem growth" evidence=RCA

TAIR|locus:2096389 AT3G03610 "AT3G03610" [Arabidopsis thaliana (taxid:3702)]

 Score = 636 (228.9 bits), Expect = 3.0e-62, P = 3.0e-62
 Identities = 118/200 (59%), Positives = 150/200 (75%)

Query:    10 QEECLQRLQLRIDVAYDSSIPEHREALRALWNAAFPDEELRDLISEQWKEMGWQGKDPST 69
             QEE L+ ++ RI++ +D S  EH++ALR LW  A+P  EL  L SE WKEMGWQG DPST
Sbjct:   122 QEERLRNIKRRIEIPFDGSRMEHQDALRQLWRLAYPQRELPPLKSELWKEMGWQGTDPST 181

Query:    70 DFRGGGFISLENLLYLARNFPKSFQDLLRKQEGDRSVWEYPFAVAGVNITFMLIQMLDLE 129
             DFRGGG+ISLENL++ A+ +P+SFQ LL KQ+G R+ WEYPFAVAG+NI+FML QMLDL+
Sbjct:   182 DFRGGGYISLENLIFFAKTYPESFQRLLHKQDGTRAEWEYPFAVAGINISFMLAQMLDLQ 241

Query:   130 AVKPRTMVGATFLKFLSENESAFDLLYCITFKLMDHQWLAMRASYMDFNTVMKSTXXXXX 189
             + KP T+ G  FL FL E+E AFD LYCI F++MD QWLA RASYM+FN V+KST     
Sbjct:   242 SGKPSTIAGIRFLGFLEEDEMAFDNLYCIAFQMMDAQWLARRASYMEFNDVLKSTRAQLE 301

Query:   190 XXXXXXDVTRLEDLPSYSLL 209
                   DV+ + DLP+++LL
Sbjct:   302 RELALDDVSSITDLPAFNLL 321

GO:0003674 "molecular_function" evidence=ND

GO:0005739 "mitochondrion" evidence=ISM

GO:0005856 "cytoskeleton" evidence=IEA

GO:0006909 "phagocytosis" evidence=IEA

GO:0009407 "toxin catabolic process" evidence=RCA

GO:0009414 "response to water deprivation" evidence=RCA

GO:0009611 "response to wounding" evidence=RCA

GO:0009738 "abscisic acid mediated signaling pathway" evidence=RCA

GO:0010583 "response to cyclopentenone" evidence=RCA

GO:0016036 "cellular response to phosphate starvation" evidence=RCA

GO:0019375 "galactolipid biosynthetic process" evidence=RCA

GO:0042538 "hyperosmotic salinity response" evidence=RCA

GO:0042631 "cellular response to water deprivation" evidence=RCA

TAIR|locus:2102276 AT3G43400 "AT3G43400" [Arabidopsis thaliana (taxid:3702)]

 Score = 479 (173.7 bits), Expect = 1.3e-45, P = 1.3e-45
 Identities = 94/156 (60%), Positives = 116/156 (74%)

Query:    27 SSIPEHREALRALWNAAFPDEELRDLISEQWKEMGWQGKDPSTDFRGGGFISLENLLYLA 86
             SS P  R  ++    + + DE+L+DLIS+QWK MGWQ KDPSTDFRG GFISLENL    
Sbjct:    58 SSTPSWR--IKKSLTSTYADEKLQDLISDQWKNMGWQRKDPSTDFRGDGFISLENL---- 111

Query:    87 RNFPKSFQDLLRKQEGDRSVWEYPFAVAGVNITFMLIQMLDLEAVKPRTMVGATFLKFLS 146
             R F K+F  LL+KQ G R+ WEYPFAVAGVNITFM++QMLDLEA KPR+ +   FL+ LS
Sbjct:   112 RFFAKTFSRLLKKQGGKRAAWEYPFAVAGVNITFMIMQMLDLEASKPRSFIRLVFLQMLS 171

Query:   147 ENESAFDLLYCITFKLMDHQWLAMRASYMDFNTVMK 182
             E+E AF LLYC+ F +MD QWL   A+YM+FN V++
Sbjct:   172 ESEWAFGLLYCVAFVVMDKQWLDKNATYMEFNDVLR 207

GO:0003674 "molecular_function" evidence=ND

GO:0005737 "cytoplasm" evidence=ISM

GO:0005856 "cytoskeleton" evidence=IEA

GO:0006909 "phagocytosis" evidence=IEA

DICTYBASE|DDB_G0278051 elmoA "engulfment and cell motility ELM family protein" [Dictyostelium discoideum (taxid:44689)]

 Score = 229 (85.7 bits), Expect = 4.4e-24, Sum P(2) = 4.4e-24
 Identities = 46/113 (40%), Positives = 66/113 (58%)

Query:    10 QEECLQRLQLRIDVAYDSSIPEHREALRALWNAAFPDEELRDLISEQWKEMGWQGKDPST 69
             Q    Q +  R +V ++    EH   L  LW+  +P  +L   +SEQWK+MG+QG DP T
Sbjct:   362 QRHRFQVITNRKNVTFNKESSEHDALLMKLWSLTYPGVKLESRVSEQWKQMGFQGTDPCT 421

Query:    70 DFRGGGFISLENLLYLARNFPKSFQDLLRKQEGDRSVWEYPFAVAGVNITFML 122
             DFR  G   L+NL+Y A+N+ + F+ ++  Q  DR   EYP A AG+ +TF L
Sbjct:   422 DFRAMGIWGLDNLIYFAQNYNEKFRKIVNSQI-DRKEREYPTATAGIVLTFEL 473

GO:0030864 "cortical actin cytoskeleton" evidence=IDA

GO:0050764 "regulation of phagocytosis" evidence=IMP

GO:0048870 "cell motility" evidence=IMP

GO:0045159 "myosin II binding" evidence=IPI

GO:0030837 "negative regulation of actin filament polymerization" evidence=IMP

GO:0030587 "sorocarp development" evidence=IMP

GO:0005737 "cytoplasm" evidence=IDA

GO:0005515 "protein binding" evidence=IPI

GO:0006909 "phagocytosis" evidence=IEA

GO:0005856 "cytoskeleton" evidence=IEA

DICTYBASE|DDB_G0282949 elmoC "engulfment and cell motility ELM family protein" [Dictyostelium discoideum (taxid:44689)]

 Score = 267 (99.0 bits), Expect = 2.9e-22, P = 2.9e-22
 Identities = 62/182 (34%), Positives = 105/182 (57%)

Query:    10 QEECLQRLQLRIDVAYDSSIPEHREALRALWNAAFPDEELRDLISEQWKEMGWQGKDPST 69
             Q + ++ L  +    Y+S+ P+H E L+ LW+  +P++E +   S  WK+ G+Q  DP+ 
Sbjct:   361 QSQTIKILFQKKSTIYESTNPDHEEYLKHLWSLLYPEQEFQKK-SPLWKKFGFQSDDPTR 419

Query:    70 DFRGGGFISLENLLYLARNFPKSFQDLLRKQEGDRSVWEYPFAVAGVNIT---FMLIQML 126
             DFRG G + L NL++L ++     Q++L +   DR   +YPFAVAG+NI+   F + Q+ 
Sbjct:   420 DFRGMGIMGLLNLIHLVQHHNDWVQEILAQ---DR---DYPFAVAGINISNLIFEVFQIS 473

Query:   127 DLEAVKP--RTMVGATFLKFLSE----NESAFDLLYCITFKLMDHQWLAMRASYMDFNTV 180
             +    +P   +   ++++  L      N+ AF+ LY + F L+DH W+ M A+YM F  V
Sbjct:   474 EDSLQQPWYSSFWSSSYMAMLCSMSRHNDHAFEELYFLIFNLLDHLWIQMNATYMMFPLV 533

Query:   181 MK 182
             +K
Sbjct:   534 IK 535

GO:0006909 "phagocytosis" evidence=IEA

GO:0005856 "cytoskeleton" evidence=IEA

DICTYBASE|DDB_G0280179 elmoB "engulfment and cell motility ELM family protein" [Dictyostelium discoideum (taxid:44689)]

 Score = 238 (88.8 bits), Expect = 4.4e-20, P = 4.4e-20
 Identities = 54/161 (33%), Positives = 89/161 (55%)

Query:    23 VAYDSSIPEHREALRALWNAAFPDEELRDLISEQWKEMGWQGKDPSTDFRGGGFISLENL 82
             + YD++  EH  +L  LW A  PD      +S++W  +G+QG DP+TDFRG G + L+NL
Sbjct:   116 IPYDNNNLEHEASLERLWEALLPDVRRSARLSKEWGTLGFQGMDPATDFRGMGILGLDNL 175

Query:    83 LYLARNFPKSFQDLLRKQEGDRSVWEYPFAVAGVNITFMLIQMLDLEAVKPRTMVGATFL 142
             +Y +    +  +++L+      S   YPFA+ G+NIT +++ ++D    KP   +   F 
Sbjct:   176 IYFSTQHSEDAREILKNSN---SKCCYPFAITGINITALVLNLID----KPHFKI--YFF 226

Query:   143 KFLSENESAFDLLYCITFKLMDHQWLAMRA-SYMDFNTVMK 182
             K  S   + F+ LY + F   D  + + +  S M+FNT+ K
Sbjct:   227 KNGS-TLTQFNELYSLVFISFDRFYQSKKPKSIMEFNTIKK 266

GO:0006909 "phagocytosis" evidence=IEA

GO:0005856 "cytoskeleton" evidence=IEA

GO:0044351 "macropinocytosis" evidence=RCA

UNIPROTKB|J9P4T8 ELMOD2 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 230 (86.0 bits), Expect = 3.1e-19, P = 3.1e-19
 Identities = 60/184 (32%), Positives = 89/184 (48%)

Query:     6 FWCCQEECLQRL----QLRIDVA------YDSSIPEHREALRALWNAAFPDEELRDLISE 55
             F  C + CL ++    QL +DV       YDS   +H + L  LWN   P ++L+  IS+
Sbjct:    91 FKICMKACLLQISGYKQLYLDVESVRKRPYDSENLQHEKLLLKLWNLLMPTKKLKARISK 150

Query:    56 QWKEMGWQGKDPSTDFRGGGFISLENLLYLARNFPKSFQDLLRKQEGDRSVWEYPFAVAG 115
             QW ++G+QG DP TDFRG G + L NL+Y + N+      +L +    +    Y +A+ G
Sbjct:   151 QWADIGFQGDDPKTDFRGMGILGLINLVYFSENYTSEAHQILSRSNHPKL--GYSYAIVG 208

Query:   116 VNITFMLIQMLDLEAVKPRTMVGATFLKFLSENESAFDLLYCITFKLMDHQWLAMRA-SY 174
             +N+T M   +L  EA+K        F+  +   E  F   YC      D  W   +  S 
Sbjct:   209 INLTEMAYSLLKSEALKFHLY---NFVPGIPTMEH-FHQFYCYLVYEFDKFWFEEKPESI 264

Query:   175 MDFN 178
             M FN
Sbjct:   265 MYFN 268

GO:0006909 "phagocytosis" evidence=IEA

GO:0005856 "cytoskeleton" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	211
pfam04727	170	pfam04727, ELMO_CED12, ELMO/CED-12 family	4e-67

>gnl|CDD|218231 pfam04727, ELMO_CED12, ELMO/CED-12 family

 Score =  203 bits (518), Expect = 4e-67
 Identities = 73/171 (42%), Positives = 96/171 (56%), Gaps = 1/171 (0%)

Query: 12  ECLQRLQLRIDVAYDSSIPEHREALRALWNAAFPDEELRDLISEQWKEMGWQGKDPSTDF 71
             L  L+      +D   PEHR  L+ LW A FPDE L   +SE+WK++G+QG DP+TDF
Sbjct: 1   LTLNLLEKLRKTPFDLENPEHRRLLKTLWKALFPDEPLSSRVSEKWKDLGFQGDDPATDF 60

Query: 72  RGGGFISLENLLYLARNFPKSFQDLLRKQEGDRSVWEYPFAVAGVNITFMLIQMLDLEAV 131
           RG G + L NLLY A N+P  FQ LL +     +  EYPFAVA +N+T ML ++L +  +
Sbjct: 61  RGTGLLGLLNLLYFAENYPDEFQKLLLESSHRPAEHEYPFAVASINVTSMLYELLRIGKL 120

Query: 132 KPRTMVGATFLKFLSENESAFDLLYCITFKLMDHQWLAMRASYMDFNTVMK 182
                    F         AF+ LYC  F L D  W  MRA+ MDFN V++
Sbjct: 121 DQEDYKNYGF-PLFFPTLLAFEELYCALFHLFDRFWKEMRATIMDFNKVLE 170

This family represents a conserved domain which is found in a number of eukaryotic proteins including CED-12, ELMO I and ELMO II. ELMO1 is a component of signalling pathways that regulate phagocytosis and cell migration and is the mammalian orthologue of the C. elegans gene, ced-12. CED-12 is required for the engulfment of dying cells and cell migration. In mammalian cells, ELMO1 interacts with Dock180 as part of the CrkII/Dock180/Rac pathway responsible for phagocytosis and cell migration. ELMO1 is ubiquitously expressed, although its expression is highest in the spleen, an organ rich in immune cells. ELMO1 has a PH domain and a polyproline sequence motif at its C terminus which are not present in this alignment. Length = 170

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	211
KOG2998	302	consensus Uncharacterized conserved protein [Funct	100.0
PF04727	170	ELMO_CED12: ELMO/CED-12 family; InterPro: IPR00681	100.0
KOG2999	713	consensus Regulator of Rac1, required for phagocyt	100.0

>KOG2998 consensus Uncharacterized conserved protein [Function unknown]

Probab=100.00  E-value=1.5e-57  Score=386.97  Aligned_cols=201  Identities=57%  Similarity=0.889  Sum_probs=185.7

Q ss_pred             CCCcHHHHHHHHHHHHhhccccCCCcHHHHHHHHHHHHHhCCCcccchhhhhhHhHhcCCCCCCCCCCCchhhhHHhhHH
Q 028231            4 FHFWCCQEECLQRLQLRIDVAYDSSIPEHREALRALWNAAFPDEELRDLISEQWKEMGWQGKDPSTDFRGGGFISLENLL   83 (211)
Q Consensus         4 ~~l~~~Q~~~l~~l~~~~~~~~d~~~~~H~~~L~~Lw~~l~~~~~~~~~~~~~W~~lGFQ~~dP~tDfRg~G~LgL~~L~   83 (211)
                      +++.+-+...++.++++.++|||.+|++|+++|.+||+.++|+++++++++++|+++||||+||.|||||||+|||.||+
T Consensus       101 ~~~~~~~~~l~~~~e~~~~~~yDs~n~~H~e~L~~lwk~~~p~~~l~~lvs~qW~emGfQG~dPsTDFRG~GfL~LeNLl  180 (302)
T KOG2998|consen  101 RHLIPGYRELLQRLEELRQEPYDSDNPDHEELLLDLWKLLYPDKELPGLVSKQWKEMGFQGADPSTDFRGMGFLGLENLL  180 (302)
T ss_pred             cccccCcHHHHHHHHHHHhccCCCCChhHHHHHHHHHHHhCCCCccchhHHHHHHHhccCCCCCCcccccchHHHHHHHH
Confidence            35667788899999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHhhChHHHHHHHHhhcCCCCCccchHHHHHHHHHHHHHHHhhhccCCCccccccchhcccccchhhHHHHHHHHHHHH
Q 028231           84 YLARNFPKSFQDLLRKQEGDRSVWEYPFAVAGVNITFMLIQMLDLEAVKPRTMVGATFLKFLSENESAFDLLYCITFKLM  163 (211)
Q Consensus        84 yF~~~~~~~~~~il~~~~~~~~~~~yPfA~~sInvT~~l~~~l~~~~~~~~~~~~~~f~~ll~~~~~~f~ely~~~f~~f  163 (211)
                      ||+++||+.++.++..|  +++.++|||||||||||.|++++|+.++++.+++.-    ..-++++.+|+.+||++|..|
T Consensus       181 yFa~~~~~~aq~lL~~s--~~~r~eYpfAVvgINIT~m~~qmL~~eal~~~~~~~----~~~~~~~~~F~~lYc~af~~~  254 (302)
T KOG2998|consen  181 YFARTYPTSAQRLLLKS--RHPRWEYPFAVVGINITFMAIQMLDLEALKKHFNNI----VKVFETEPAFDLLYCYAFLEF  254 (302)
T ss_pred             HHHHhhhHHHHHHHHhc--CCCccCCceEEEeecHHHHHHHHHHhhhcccccccc----ccccccHHHHHHHHHHHHHHH
Confidence            99999999999999996  466799999999999999999999999886554321    122367789999999999999


Q ss_pred             HHHHhhCCCChhhHHHHHHHHHHHHHHHhccccccCcCCCccccccc
Q 028231          164 DHQWLAMRASYMDFNTVMKSTRRQLERELLLEDVTRLEDLPSYSLLS  210 (211)
Q Consensus       164 ~~~W~~~~~t~~dF~~V~~~~r~ql~~~l~~~~~~~~~~l~~~~~~~  210 (211)
                      ++.|+++++||||||.|++.+|.|+++.|.+.++....++|+|..|.
T Consensus       255 d~~Wl~~~~simefn~Vlk~~~~qler~L~~~d~~~~~~lp~~~~L~  301 (302)
T KOG2998|consen  255 DKQWLEQRATIMEFNTVLKSFRRQLERELSLDDVLLITDLPAFNLLL  301 (302)
T ss_pred             HHHHHHhhccHHHHHHHHHHHHHHHHHhhhhhhhcccccchhhhhhc
Confidence            99999999999999999999999999999999999999999999874

>PF04727 ELMO_CED12: ELMO/CED-12 family; InterPro: IPR006816 This entry represents the ELMO (EnguLfment and Cell MOtility) domain, which is found in a number of eukaryotic proteins involved in the cytoskeletal rearrangements required for phagocytosis of apoptotic cells and cell motility, including CED-12, ELMO-1 and ELMO-2

Probab=100.00  E-value=2.2e-52  Score=337.34  Aligned_cols=170  Identities=44%  Similarity=0.785  Sum_probs=152.7

Q ss_pred             HHHHHHHHhhccccCCCcHHHHHHHHHHHHHhCCCcccchhhhhhHhHhcCCCCCCCCCCCchhhhHHhhHHHHHhhChH
Q 028231           12 ECLQRLQLRIDVAYDSSIPEHREALRALWNAAFPDEELRDLISEQWKEMGWQGKDPSTDFRGGGFISLENLLYLARNFPK   91 (211)
Q Consensus        12 ~~l~~l~~~~~~~~d~~~~~H~~~L~~Lw~~l~~~~~~~~~~~~~W~~lGFQ~~dP~tDfRg~G~LgL~~L~yF~~~~~~   91 (211)
                      ++|+.|++++++|||++|++|+++|++||++++++.+.+++.+++|+.|||||+||+|||||+|+|||+||+||+++||+
T Consensus         1 ~~l~~l~~~~~~~~d~~~~~h~~~L~~Lw~~~~~~~~~~~~~~~~W~~lGFQ~~dP~tDFR~~G~LgL~~L~yf~~~~~~   80 (170)
T PF04727_consen    1 HTLNLLRALAKTPFDPENPEHEELLQELWNALFPDEPPFSRISEHWKELGFQGEDPATDFRGMGLLGLDCLLYFAENYPD   80 (170)
T ss_pred             ChHHHHHHHHcCCCCCCCHHHHHHHHHHHHHhCCCCccCCcCccHHHHhCCCCCCcHHHHhhhhHHHHHHHHHHHHHChH
Confidence            36899999999999999999999999999999999888899999999999999999999999999999999999999999


Q ss_pred             HHHHHHHhhcCCCCCccchHHHHHHHHHHHHHHHhhhccCCCccccccchhcccccchhhHHHHHHHHHHHHHHHHhhCC
Q 028231           92 SFQDLLRKQEGDRSVWEYPFAVAGVNITFMLIQMLDLEAVKPRTMVGATFLKFLSENESAFDLLYCITFKLMDHQWLAMR  171 (211)
Q Consensus        92 ~~~~il~~~~~~~~~~~yPfA~~sInvT~~l~~~l~~~~~~~~~~~~~~f~~ll~~~~~~f~ely~~~f~~f~~~W~~~~  171 (211)
                      .+++|+.++.++.+..+||||+||||||.+|+++++.+..+...+.....+. +++.+.+|++|||++|..|+++|++++
T Consensus        81 ~~~~~l~~~~~~~~~~~~Pfa~~~invt~~l~~~l~~~~~~~~~~~~~~~~~-~~~~~~~f~elf~~~f~~f~~~W~~~~  159 (170)
T PF04727_consen   81 EFRRILREQSSRSDENWYPFAVASINVTSLLCELLKLGALDSEFYKRINFLS-FFSSLEAFEELFCACFQLFDRTWKEMN  159 (170)
T ss_pred             HHHHHHHHccCcccccccHHHHHHHHHHHHHHHHHhhcccCHHHhhcccccc-cCccHHHHHHHHHHHHHHHHHHHccCC
Confidence            9999999988766667999999999999999999999766544332211111 456788999999999999999999999


Q ss_pred             CChhhHHHHHH
Q 028231          172 ASYMDFNTVMK  182 (211)
Q Consensus       172 ~t~~dF~~V~~  182 (211)
                      +|+|||++|++
T Consensus       160 at~~dF~~V~~  170 (170)
T PF04727_consen  160 ATIMDFNKVLK  170 (170)
T ss_pred             CCHHHHHhhcC
Confidence            99999999974

ELMO-1 and ELMO-2 are components of signalling pathways that regulate phagocytosis and cell migration and are mammalian orthologues of the Caenorhabditis elegans gene, ced-12 that is required for the engulfment of dying cells and cell migration. ELMO-1/2 act in association with DOCK1 and CRK. ELMO-1/2 interact with the SH3-domain of DOCK1 via an SH3-binding site to enhance the guanine nucleotide exchange factor (GEF) activity of DOCK1. ELMO-1/2 could be part of a complex with DOCK1 and Rac1 that could be required to activate Rac Rho small GTPases. Regulatory GTPases in the Ras superfamily employ a cycle of alternating GTP binding and hydrolysis, controlled by guanine nucleotide exchange factors and GTPase-activating proteins (GAPs), as essential features of their actions in cells. Within the Ras superfamily, the Arf family is composed of 30 members, including 22 Arf-like (Arl) proteins. The ELMO domain has been proposed to be a GAP domain for ARL2 and other members of the Arf family [].; GO: 0006909 phagocytosis, 0005856 cytoskeleton

>KOG2999 consensus Regulator of Rac1, required for phagocytosis and cell migration [Signal transduction mechanisms]

Probab=100.00  E-value=2.2e-34  Score=261.21  Aligned_cols=199  Identities=27%  Similarity=0.516  Sum_probs=182.3

Q ss_pred             CCCcHHHHHHHHHHHHhhccccCCCcHHHHHHHHHHHHHhCCCccc-----------chhhhhhHhHhcCCC-CCCCCCC
Q 028231            4 FHFWCCQEECLQRLQLRIDVAYDSSIPEHREALRALWNAAFPDEEL-----------RDLISEQWKEMGWQG-KDPSTDF   71 (211)
Q Consensus         4 ~~l~~~Q~~~l~~l~~~~~~~~d~~~~~H~~~L~~Lw~~l~~~~~~-----------~~~~~~~W~~lGFQ~-~dP~tDf   71 (211)
                      -+|+..|...++.+..++.++.|+.++..+++++.+-..++.++..           .....+..+.+||.. .||+.||
T Consensus       276 ~~lyvlq~L~~glle~Rm~~~md~~~q~qr~~i~~lr~iaf~~~~~~~~~g~~~e~rk~l~~~~ykklgf~n~~npa~df  355 (713)
T KOG2999|consen  276 IQLYVLQVLTLGLLEVRMRTKMDPQDQVQRELISELRRIAFDDESEPSRRGGGAEVRKILDIESYKKLGFENRINPAQDF  355 (713)
T ss_pred             HHHHHHHHHHHhhhHHhhhcccchhhHHHHHHHHHHHhcCcccccccccCCcchhhhhhhhHHHHHhhcccccCChHHhc
Confidence            3688999999999999999999999999999999999999876422           234567999999998 9999999


Q ss_pred             C--chhhhHHhhHHHHHhhChHHHHHHHHhhcCCCCCccchHHHHHHHHHHHHHHHhhhccCCCccccccchhcccccch
Q 028231           72 R--GGGFISLENLLYLARNFPKSFQDLLRKQEGDRSVWEYPFAVAGVNITFMLIQMLDLEAVKPRTMVGATFLKFLSENE  149 (211)
Q Consensus        72 R--g~G~LgL~~L~yF~~~~~~~~~~il~~~~~~~~~~~yPfA~~sInvT~~l~~~l~~~~~~~~~~~~~~f~~ll~~~~  149 (211)
                      -  ..|+|+|+||+||+++||+.+.+++.++++|.+++.|||+.++|.+|.++|++|+.+.+...  ....|.++||.++
T Consensus       356 ~etppG~LAldnMvyFA~~~~~~y~riVlENSsRedkhecpfgr~sieltk~lcEilrVge~p~E--~~~df~pmfFthd  433 (713)
T KOG2999|consen  356 GETPPGRLALDNMVYFARNSPQDYRRIVLENSSREDKHECPFGRMSIELTKILCELLRVGEPPDE--LDRDFIPMFFTHD  433 (713)
T ss_pred             ccCCchHHHHHHHHHHHHhCHHHHHHHHHhcccccccCcCCcCccHHHHHHHHHHHHhcCCCchh--hcCccceeeecCC
Confidence            8  89999999999999999999999999999999999999999999999999999999875332  3356999999999


Q ss_pred             hhHHHHHHHHHHHHHHHHhhCCCChhhHHHHHHHHHHHHHHHhccccccCcCCCcc
Q 028231          150 SAFDLLYCITFKLMDHQWLAMRASYMDFNTVMKSTRRQLERELLLEDVTRLEDLPS  205 (211)
Q Consensus       150 ~~f~ely~~~f~~f~~~W~~~~~t~~dF~~V~~~~r~ql~~~l~~~~~~~~~~l~~  205 (211)
                      ..|+|+||+|.++|+++|++|+||-.||++|+++||+||.++|..+ +++++++.+
T Consensus       434 ~~Fee~FciciqLlnkTWKEMrAt~edf~KVmqVVrEQl~r~L~~k-p~sld~fks  488 (713)
T KOG2999|consen  434 TPFEELFCICVQLLNRTWKEMRATAEDFEKVMQVVREQLRRALKRK-PQSLDQFKS  488 (713)
T ss_pred             CcHHHHHHHHHHHHHhHHHHHHhhhhhHHHHHHHHHHHHHHHhccC-CccHHHHHH
Confidence            9999999999999999999999999999999999999999999987 999988764

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	211
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	6e-07

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 48.3 bits (114), Expect = 6e-07
 Identities = 40/270 (14%), Positives = 77/270 (28%), Gaps = 88/270 (32%)

Query: 1   MFNFH-FW----CCQE-----ECLQRLQLRIDVAYDS------SIPEHREAL-------- 36
             +F  FW     C       E LQ+L  +ID  + S      +I     ++        
Sbjct: 179 KMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLL 238

Query: 37  ------RAL------WNA----AFPDEELRDLISEQWKE-----MGWQGKDPSTDFRGGG 75
                   L       NA    AF +   + L++ ++K+             S D     
Sbjct: 239 KSKPYENCLLVLLNVQNAKAWNAF-NLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMT 297

Query: 76  FISLENLLYLARNFPKSFQDLLRKQEGDRSVWEYPFAVAGV-------NITFMLIQMLDL 128
               E    L +      QD L ++    +    P  ++ +         T+   + ++ 
Sbjct: 298 LTPDEVKSLLLKYLDCRPQD-LPREVLTTN----PRRLSIIAESIRDGLATWDNWKHVNC 352

Query: 129 EAVKPRTMVGATFLKFLSENESAFDLLYCITFKLMDHQWLAMRASYMDFNTVMKSTR--- 185
           + +    +   + L  L   E                     R  +   +    S     
Sbjct: 353 DKLT-TII--ESSLNVLEPAE--------------------YRKMFDRLSVFPPSAHIPT 389

Query: 186 RQLER---ELLLEDVTR-LEDLPSYSLLSR 211
             L     +++  DV   +  L  YSL+ +
Sbjct: 390 ILLSLIWFDVIKSDVMVVVNKLHKYSLVEK 419

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

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Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00