Citrus Sinensis ID: 028244

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-
MVAEEWGREAGNDGWHRRWEAALCRSYERADDVFKDNSLAPYSVGTTALVAILSPCQIIASNCGDSRVVLSRGKQAIPLTVDHKLDREDEVARITNGGDHDLKPWVIAEPEVTFMTRSEDDEFLILASDGLWDVMSSDDAVKLARYELRRRRRLPEKGDTPSSPACGAAEELVKIAYDAFSTDNISVVIVDLKAPRIRSLQNTEKRDEKQM
ccccccccccccccHHHHHHHHHHHHHHHHHHHHHHccccccccccEEEEEEEEccEEEEEEccccEEEEEEccEEEccccccccccHHHHHHHHHcccccccccccccccEEEEEccccccEEEEEccccccccccHHHHHHHHHHHHHccccccccccccccHHHHHHHHHHHHHccccccccEEEEEEccccccccccccccHHcccc
cHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHccccccccccEEEEEEEEccEEEEEEcccccEEEEccccEEEcccccccccHHHHHHHHHHccccccccccccccEEEEEccccccEEEEEccccccccccHHHHHHHHHHHHHHcccccccccccccHHHHHHHHHHHHHHccccccEEEEEEEcccccccccccccHHHHccc
mvaeewgreagndgWHRRWEAALCRSYEraddvfkdnslapysvgTTALVAILSPcqiiasncgdsrvvlsrgkqaipltvdhkldredevaritnggdhdlkpwviaepevtfmtrsedDEFLILASDGLWDVMSSDDAVKLARYELRRrrrlpekgdtpsspacgaAEELVKIAYDAFSTDNISVVIVdlkaprirslqNTEKRDEKQM
mvaeewgreagndgwhrrWEAALCRSYERADDVFKDNSLAPYSVGTTALVAILSPCQIIASNCGDSRVVLSRgkqaipltvdhkldredEVARitnggdhdlkpwVIAEPEVTFMTRSEDDEFLILASdglwdvmssdDAVKLARYElrrrrrlpekgdtpsspacgAAEELVKIAYDAFSTDNISVVivdlkaprirslqntekrdekqm
MVAEEWGREAGNDGWHRRWEAALCRSYERADDVFKDNSLAPYSVGTTALVAILSPCQIIASNCGDSRVVLSRGKQAIPLTVDHKLDREDEVARITNGGDHDLKPWVIAEPEVTFMTRSEDDEFLILASDGLWDVMSSDDAVKLARYElrrrrrlPEKGDTPSSPACGAAEELVKIAYDAFSTDNISVVIVDLKAPRIRSLQNTEKRDEKQM
***********NDGWHRRWEAALCRSYERADDVFKDNSLAPYSVGTTALVAILSPCQIIASNCGDSRVVLSRGKQAIPLTVDHKLDREDEVARITNGGDHDLKPWVIAEPEVTFMTRSEDDEFLILASDGLWDVMSSDDAVKLARY********************GAAEELVKIAYDAFSTDNISVVIVDLKAP****************
MVA***********W*RRWEAALCRSYERADDVFKDN*****SVGTTALVAILSPCQIIASNCGDSRVVLSRGKQAIPLTVDHKLDREDEVARITNGGDHDLKPWVIAEPEVTFMTRSEDDEFLILASDGLWDVMSSDDAVKLARYELRRRRRLPE***TPSSPACGAAEELVKIAYDAFSTDNISVVIVD********************
***********NDGWHRRWEAALCRSYERADDVFKDNSLAPYSVGTTALVAILSPCQIIASNCGDSRVVLSRGKQAIPLTVDHKLDREDEVARITNGGDHDLKPWVIAEPEVTFMTRSEDDEFLILASDGLWDVMSSDDAVKLARYELRRRRRL**********ACGAAEELVKIAYDAFSTDNISVVIVDLKAPRIRSL***********
MVAEEWGREAGNDGWHRRWEAALCRSYERADDVFKDNSLAPYSVGTTALVAILSPCQIIASNCGDSRVVLSRGKQAIPLTVDHKLDREDEVARITNGGDHDLKPWVIAEPEVTFMTRSEDDEFLILASDGLWDVMSSDDAVKLARYELRRRRR*******PSSPACGAAEELVKIAYDAFSTDNISVVIVDLKA*****************
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
oooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MVAEEWGREAGNDGWHRRWEAALCRSYERADDVFKDNSLAPYSVGTTALVAILSPCQIIASNCGDSRVVLSRGKQAIPLTVDHKLDREDEVARITNGGDHDLKPWVIAEPEVTFMTRSEDDEFLILASDGLWDVMSSDDAVKLARYELRRRRRLPEKGDTPSSPACGAAEELVKIAYDAFSTDNISVVIVDLKAPRIRSLQNTEKRDEKQM
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query211 2.2.26 [Sep-21-2011]
Q0JLP9467 Probable protein phosphat yes no 0.900 0.406 0.422 6e-39
Q9LNP9511 Protein phosphatase 2C 7 yes no 0.924 0.381 0.403 9e-38
Q5SN75403 Probable protein phosphat no no 0.881 0.461 0.441 1e-36
Q9CAJ0511 Protein phosphatase 2C 16 no no 0.748 0.309 0.468 6e-36
P49597434 Protein phosphatase 2C 56 no no 0.895 0.435 0.421 9e-36
O04719423 Protein phosphatase 2C 77 no no 0.876 0.437 0.422 2e-35
Q6L4R7445 Probable protein phosphat no no 0.853 0.404 0.403 7e-33
Q6L5H6387 Probable protein phosphat no no 0.909 0.496 0.361 6e-31
Q9FLI3416 Probable protein phosphat no no 0.862 0.437 0.390 9e-30
Q9LNW3442 Protein phosphatase 2C 3 no no 0.748 0.357 0.355 6e-29
>sp|Q0JLP9|P2C06_ORYSJ Probable protein phosphatase 2C 6 OS=Oryza sativa subsp. japonica GN=Os01g0583100 PE=2 SV=1 Back     alignment and function desciption
 Score =  160 bits (405), Expect = 6e-39,   Method: Compositional matrix adjust.
 Identities = 95/225 (42%), Positives = 128/225 (56%), Gaps = 35/225 (15%)

Query: 7   GREAGNDGWHRRWEAALCRSYERADDVFKDNS-----LAPYSVGTTALVAILSPCQIIAS 61
           G   G+  + ++WE A    + R D+    N+     +AP +VG+TA+VA++    II +
Sbjct: 237 GANLGSVEFKKKWEQAFVDCFSRVDEEVGGNASRGEAVAPETVGSTAVVAVICSSHIIVA 296

Query: 62  NCGDSRVVLSRGKQAIPLTVDHKLDREDEVARIT---------NG-------------GD 99
           NCGDSR VL RGKQ +PL+VDHK +REDE ARI          NG             GD
Sbjct: 297 NCGDSRAVLCRGKQPVPLSVDHKPNREDEYARIEAEGGKVIQWNGYRVFGVLAMSRSIGD 356

Query: 100 HDLKPWVIAEPEVTFMTRSEDDEFLILASDGLWDVMSSDDAVKLARYELRRRRR------ 153
             LKPW+I  PE+T + R++DDE L+LASDGLWDVMS+++   +AR  +    +      
Sbjct: 357 RYLKPWIIPVPEITIVPRAKDDECLVLASDGLWDVMSNEEVCDVARKRILLWHKKNGTNP 416

Query: 154 --LPEKGDTPSSPACGAAEELVKIAYDAFSTDNISVVIVDLKAPR 196
              P  GD+    A  AAE L K+A    S DNISV++VDLKA R
Sbjct: 417 ASAPRSGDSSDPAAEAAAECLSKLALQKGSKDNISVIVVDLKAHR 461

Oryza sativa subsp. japonica (taxid: 39947)
EC: 3EC: .EC: 1EC: .EC: 3EC: .EC: 1EC: 6
>sp|Q9LNP9|P2C07_ARATH Protein phosphatase 2C 7 OS=Arabidopsis thaliana GN=HAB2 PE=2 SV=2 Back     alignment and function description
>sp|Q5SN75|P2C08_ORYSJ Probable protein phosphatase 2C 8 OS=Oryza sativa subsp. japonica GN=Os01g0656200 PE=2 SV=1 Back     alignment and function description
>sp|Q9CAJ0|P2C16_ARATH Protein phosphatase 2C 16 OS=Arabidopsis thaliana GN=HAB1 PE=1 SV=1 Back     alignment and function description
>sp|P49597|P2C56_ARATH Protein phosphatase 2C 56 OS=Arabidopsis thaliana GN=ABI1 PE=1 SV=2 Back     alignment and function description
>sp|O04719|P2C77_ARATH Protein phosphatase 2C 77 OS=Arabidopsis thaliana GN=ABI2 PE=1 SV=1 Back     alignment and function description
>sp|Q6L4R7|P2C53_ORYSJ Probable protein phosphatase 2C 53 OS=Oryza sativa subsp. japonica GN=Os05g0592800 PE=2 SV=1 Back     alignment and function description
>sp|Q6L5H6|P2C50_ORYSJ Probable protein phosphatase 2C 50 OS=Oryza sativa subsp. japonica GN=Os05g0537400 PE=2 SV=1 Back     alignment and function description
>sp|Q9FLI3|P2C75_ARATH Probable protein phosphatase 2C 75 OS=Arabidopsis thaliana GN=AHG1 PE=2 SV=1 Back     alignment and function description
>sp|Q9LNW3|P2C03_ARATH Protein phosphatase 2C 3 OS=Arabidopsis thaliana GN=AIP1 PE=1 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query211
225442472 372 PREDICTED: probable protein phosphatase 0.933 0.529 0.559 1e-59
225442477 372 PREDICTED: probable protein phosphatase 0.933 0.529 0.559 6e-59
359484545 396 PREDICTED: probable protein phosphatase 0.919 0.489 0.531 1e-45
297738761 330 unnamed protein product [Vitis vinifera] 0.919 0.587 0.527 1e-45
147767775 623 hypothetical protein VITISV_042313 [Viti 0.919 0.311 0.531 2e-45
356523775 385 PREDICTED: probable protein phosphatase 0.928 0.509 0.493 4e-44
224114515 317 predicted protein [Populus trichocarpa] 0.914 0.608 0.486 5e-44
356513169 384 PREDICTED: probable protein phosphatase 0.928 0.510 0.484 3e-43
102139985 348 protein phosphatase 2C, putative [Musa b 0.909 0.551 0.462 4e-43
449435774 380 PREDICTED: probable protein phosphatase 0.909 0.505 0.467 4e-41
>gi|225442472|ref|XP_002278143.1| PREDICTED: probable protein phosphatase 2C 6 [Vitis vinifera] gi|297743194|emb|CBI36061.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
 Score =  234 bits (598), Expect = 1e-59,   Method: Compositional matrix adjust.
 Identities = 123/220 (55%), Positives = 150/220 (68%), Gaps = 23/220 (10%)

Query: 1   MVAEEWGREAGNDGWHRRWEAALCRSYERADDVFKDNSLAPYSVGTTALVAILSPCQIIA 60
           MVAEEW R  G D W +RWE AL R+Y RADD  KD +LAPYSVG+T+LV ++SPCQIIA
Sbjct: 149 MVAEEWER-GGGDEWSKRWEVALRRAYGRADDALKDKALAPYSVGSTSLVVVVSPCQIIA 207

Query: 61  SNCGDSRVVLSRGKQAIPLTVDHKLDREDEVARITNG----------------------G 98
           +NCGDSR VL RG QAIPLTVDHKLDR+DE+ARI                         G
Sbjct: 208 ANCGDSRAVLCRGTQAIPLTVDHKLDRQDELARIEEAGGQILYWQGPRVEGVLSMTRAIG 267

Query: 99  DHDLKPWVIAEPEVTFMTRSEDDEFLILASDGLWDVMSSDDAVKLARYELRRRRRLPEKG 158
           DH LKPW+I+EPEV F TRS++DE LILASDGLWDV+S++  VK+AR  LR  RR     
Sbjct: 268 DHYLKPWIISEPEVAFTTRSDEDECLILASDGLWDVLSNEQVVKVARNSLREERRKALLN 327

Query: 159 DTPSSPACGAAEELVKIAYDAFSTDNISVVIVDLKAPRIR 198
           D+   PA  AA+ L+  A   +S DNIS+++VDLK+ + R
Sbjct: 328 DSSLPPAHSAADSLLCCALAEYSDDNISIIVVDLKSRKRR 367

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|225442477|ref|XP_002278271.1| PREDICTED: probable protein phosphatase 2C 6 [Vitis vinifera] gi|297743199|emb|CBI36066.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|359484545|ref|XP_002280468.2| PREDICTED: probable protein phosphatase 2C 6-like [Vitis vinifera] Back     alignment and taxonomy information
>gi|297738761|emb|CBI28006.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|147767775|emb|CAN71518.1| hypothetical protein VITISV_042313 [Vitis vinifera] Back     alignment and taxonomy information
>gi|356523775|ref|XP_003530510.1| PREDICTED: probable protein phosphatase 2C 6-like [Glycine max] Back     alignment and taxonomy information
>gi|224114515|ref|XP_002332349.1| predicted protein [Populus trichocarpa] gi|222832070|gb|EEE70547.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|356513169|ref|XP_003525286.1| PREDICTED: probable protein phosphatase 2C 6-like [Glycine max] Back     alignment and taxonomy information
>gi|102139985|gb|ABF70120.1| protein phosphatase 2C, putative [Musa balbisiana] Back     alignment and taxonomy information
>gi|449435774|ref|XP_004135669.1| PREDICTED: probable protein phosphatase 2C 6-like [Cucumis sativus] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query211
TAIR|locus:2165371416 AHG1 "ABA-hypersensitive germi 0.454 0.230 0.448 5.6e-28
TAIR|locus:2007327380 AT1G07160 [Arabidopsis thalian 0.421 0.234 0.401 3.8e-20
TAIR|locus:2005488434 ABI1 "ABA INSENSITIVE 1" [Arab 0.568 0.276 0.443 1.1e-19
TAIR|locus:2045678396 AT2G30020 [Arabidopsis thalian 0.431 0.229 0.405 2.9e-19
TAIR|locus:2029172371 AT1G43900 [Arabidopsis thalian 0.364 0.207 0.397 2.8e-18
TAIR|locus:2164610423 ABI2 "AT5G57050" [Arabidopsis 0.526 0.262 0.433 3.7e-18
TAIR|locus:2124784311 WIN2 "HOPW1-1-interacting 2" [ 0.369 0.250 0.397 5.5e-18
TAIR|locus:2030230511 HAB1 "AT1G72770" [Arabidopsis 0.464 0.191 0.481 2.3e-17
TAIR|locus:2007943511 HAB2 "homology to ABI2" [Arabi 0.464 0.191 0.481 4.8e-17
TAIR|locus:2025087442 HAI2 "highly ABA-induced PP2C 0.383 0.183 0.445 1.1e-16
TAIR|locus:2165371 AHG1 "ABA-hypersensitive germination 1" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 182 (69.1 bits), Expect = 5.6e-28, Sum P(2) = 5.6e-28
 Identities = 48/107 (44%), Positives = 60/107 (56%)

Query:    98 GDHDLKPWVIAEPEVTFMTRSEDDEFLILASDGLWDVMSSDDAVKLARY---EXXXXX-- 152
             GD  LKP V  EPEVTFM R   DE L+LASDGLWDV+SS  A  +AR+   E       
Sbjct:   306 GDRYLKPMVAWEPEVTFMRRESGDECLVLASDGLWDVLSSQLACDIARFCLREETPSSLD 365

Query:   153 ----XXPEKGDTPSSPACG--AAEELVKIAYDAFSTDNISVVIVDLK 193
                    +  D   +P+    AA  L ++A    S+DNISVV++DLK
Sbjct:   366 LNRMAQEDDNDGEQNPSRSVLAATLLTRLALGRQSSDNISVVVIDLK 412
GO:0003824 "catalytic activity" evidence=IEA
GO:0004722 "protein serine/threonine phosphatase activity" evidence=IEA;ISS
GO:0005634 "nucleus" evidence=ISM
GO:0006470 "protein dephosphorylation" evidence=IEA
GO:0008287 "protein serine/threonine phosphatase complex" evidence=IEA
GO:0009737 "response to abscisic acid stimulus" evidence=RCA;IMP
GO:0009062 "fatty acid catabolic process" evidence=RCA
GO:0009640 "photomorphogenesis" evidence=RCA
GO:0009793 "embryo development ending in seed dormancy" evidence=RCA
GO:0009845 "seed germination" evidence=RCA
GO:0009909 "regulation of flower development" evidence=RCA
GO:0009933 "meristem structural organization" evidence=RCA
GO:0010162 "seed dormancy process" evidence=RCA
GO:0010182 "sugar mediated signaling pathway" evidence=RCA
GO:0010228 "vegetative to reproductive phase transition of meristem" evidence=RCA
GO:0016114 "terpenoid biosynthetic process" evidence=RCA
GO:0016567 "protein ubiquitination" evidence=RCA
GO:0019915 "lipid storage" evidence=RCA
GO:0050826 "response to freezing" evidence=RCA
TAIR|locus:2007327 AT1G07160 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2005488 ABI1 "ABA INSENSITIVE 1" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2045678 AT2G30020 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2029172 AT1G43900 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2164610 ABI2 "AT5G57050" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2124784 WIN2 "HOPW1-1-interacting 2" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2030230 HAB1 "AT1G72770" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2007943 HAB2 "homology to ABI2" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2025087 HAI2 "highly ABA-induced PP2C gene 2" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

Prediction LevelEC numberConfidence of Prediction
3rd Layer3.1.3.16LOW CONFIDENCE prediction!
3rd Layer3.1.3LOW CONFIDENCE prediction!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query211
cd00143254 cd00143, PP2Cc, Serine/threonine phosphatases, fam 9e-55
smart00332252 smart00332, PP2Cc, Serine/threonine phosphatases, 4e-47
pfam00481252 pfam00481, PP2C, Protein phosphatase 2C 2e-39
COG0631262 COG0631, PTC1, Serine/threonine protein phosphatas 7e-26
PLN03145365 PLN03145, PLN03145, Protein phosphatase 2c; Provis 3e-21
PTZ00224381 PTZ00224, PTZ00224, protein phosphatase 2C; Provis 2e-11
pfam13672211 pfam13672, PP2C_2, Protein phosphatase 2C 2e-04
smart00331193 smart00331, PP2C_SIG, Sigma factor PP2C-like phosp 0.002
>gnl|CDD|238083 cd00143, PP2Cc, Serine/threonine phosphatases, family 2C, catalytic domain; The protein architecture and deduced catalytic mechanism of PP2C phosphatases are similar to the PP1, PP2A, PP2B family of protein Ser/Thr phosphatases, with which PP2C shares no sequence similarity Back     alignment and domain information 
 Score =  174 bits (444), Expect = 9e-55
 Identities = 81/213 (38%), Positives = 110/213 (51%), Gaps = 36/213 (16%)

Query: 2   VAEEWGREAGNDGWHRRWEAALCRSYERADDVFKDNS---LAPYSVGTTALVAILSPCQI 58
           + EE   E          E AL +++ RAD+   + +         GTTA+VA++   ++
Sbjct: 56  LLEEL--EETLTLSEEDIEEALRKAFLRADEEILEEAQDEPDDARSGTTAVVALIRGNKL 113

Query: 59  IASNCGDSRVVLSRGKQAIPLTVDHKLDREDEVARIT-----------NG--------GD 99
             +N GDSR VL R  +A+ LT DHK   E+E  RI             G        GD
Sbjct: 114 YVANVGDSRAVLCRNGEAVQLTKDHKPVNEEERERIEKAGGRVSNGRVPGVLAVTRALGD 173

Query: 100 HDLKPWVIAEPEVTFMTRSEDDEFLILASDGLWDVMSSDDAVKLARYELRRRRRLPEKGD 159
            DLKP V AEP+VT +  +EDD+FLILASDGLWDV+S+ +AV + R EL +         
Sbjct: 174 FDLKPGVSAEPDVTVVKLTEDDDFLILASDGLWDVLSNQEAVDIVRSELAKEDLQ----- 228

Query: 160 TPSSPACGAAEELVKIAYDAFSTDNISVVIVDL 192
                   AA+ELV +A    S DNI+VV+V L
Sbjct: 229 -------EAAQELVDLALRRGSHDNITVVVVRL 254

Length = 254
>gnl|CDD|214625 smart00332, PP2Cc, Serine/threonine phosphatases, family 2C, catalytic domain Back     alignment and domain information
>gnl|CDD|215938 pfam00481, PP2C, Protein phosphatase 2C Back     alignment and domain information
>gnl|CDD|223704 COG0631, PTC1, Serine/threonine protein phosphatase [Signal transduction mechanisms] Back     alignment and domain information
>gnl|CDD|215603 PLN03145, PLN03145, Protein phosphatase 2c; Provisional Back     alignment and domain information
>gnl|CDD|240318 PTZ00224, PTZ00224, protein phosphatase 2C; Provisional Back     alignment and domain information
>gnl|CDD|222308 pfam13672, PP2C_2, Protein phosphatase 2C Back     alignment and domain information
>gnl|CDD|214624 smart00331, PP2C_SIG, Sigma factor PP2C-like phosphatases Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 211
PLN03145365 Protein phosphatase 2c; Provisional 100.0
KOG0697379 consensus Protein phosphatase 1B (formerly 2C) [Si 100.0
KOG0698330 consensus Serine/threonine protein phosphatase [Si 100.0
COG0631262 PTC1 Serine/threonine protein phosphatase [Signal 100.0
PTZ00224381 protein phosphatase 2C; Provisional 100.0
PF00481254 PP2C: Protein phosphatase 2C; InterPro: IPR001932 100.0
cd00143254 PP2Cc Serine/threonine phosphatases, family 2C, ca 99.97
smart00332255 PP2Cc Serine/threonine phosphatases, family 2C, ca 99.97
KOG0699542 consensus Serine/threonine protein phosphatase [Si 99.96
PRK14559645 putative protein serine/threonine phosphatase; Pro 99.96
KOG0700390 consensus Protein phosphatase 2C/pyruvate dehydrog 99.94
KOG1323493 consensus Serine/threonine phosphatase [Signal tra 99.93
KOG1379330 consensus Serine/threonine protein phosphatase [Si 99.79
KOG0618 1081 consensus Serine/threonine phosphatase 2C containi 99.75
smart00331193 PP2C_SIG Sigma factor PP2C-like phosphatases. 99.53
PF13672212 PP2C_2: Protein phosphatase 2C; PDB: 2JFT_A 2JFS_A 99.43
TIGR02865764 spore_II_E stage II sporulation protein E. Stage I 99.4
PF07228193 SpoIIE: Stage II sporulation protein E (SpoIIE); I 99.36
COG2208367 RsbU Serine phosphatase RsbU, regulator of sigma s 98.17
>PLN03145 Protein phosphatase 2c; Provisional Back     alignment and domain information 
Probab=100.00  E-value=6e-38  Score=269.56  Aligned_cols=189  Identities=32%  Similarity=0.463  Sum_probs=159.2

Q ss_pred             HHhhhhh-CCCchHHHHHHHHHHHHHHHHHHHhhcC--CCCCCCCceeEEEEEeCCeEEEEeccccceEEEeCCccccCC
Q 028244            4 EEWGREA-GNDGWHRRWEAALCRSYERADDVFKDNS--LAPYSVGTTALVAILSPCQIIASNCGDSRVVLSRGKQAIPLT   80 (211)
Q Consensus         4 ~~l~~~~-~~~~~~~~~~~~l~~a~~~~~~~l~~~~--~~~~~~GtT~~~~~i~~~~~~~anvGDSr~~l~~~~~~~~lt   80 (211)
                      ++|.+.+ ....+...+.++|.++|.++|+.+....  .....+|||++++++.++++|++|+||||+|+++++++++||
T Consensus       123 ~~l~~~i~~~~~~~~~~~~al~~af~~~d~~~~~~~~~~~~~~~GTTavv~li~~~~l~vaNvGDSRayl~r~g~~~~LT  202 (365)
T PLN03145        123 YHLPRFIVEDEDFPREIEKVVSSAFLQTDTAFAEACSLDASLASGTTALAALVVGRSLVVANAGDCRAVLCRRGKAIEMS  202 (365)
T ss_pred             HHHHHHHHhhhccchhHHHHHHHHHHHHhHHHHhhhccccCCCCcCcEEEEEEECCeEEEEecCCceEEEEcCCeEEEec
Confidence            3444444 2334455788899999999999998754  234569999999999999999999999999999999999999


Q ss_pred             CCCCCCChHHHHHHHh-------------------hCCCCCCC-------ccccCCcEEEEEecCCCeEEEEEcCCcccc
Q 028244           81 VDHKLDREDEVARITN-------------------GGDHDLKP-------WVIAEPEVTFMTRSEDDEFLILASDGLWDV  134 (211)
Q Consensus        81 ~dH~~~~~~e~~ri~~-------------------lG~~~~~~-------~v~~~p~i~~~~~~~~~~~lil~SDGl~d~  134 (211)
                      .||++.++.|+.||..                   |||+.+|.       .+++.|++..+.+..+++||||||||||++
T Consensus       203 ~DH~~~~~~E~~RI~~~Gg~v~~g~v~g~l~vTRalGD~~~k~~k~~~~~~vs~ePdv~~~~l~~~D~fLILaSDGLwdv  282 (365)
T PLN03145        203 RDHKPMCSKERKRIEASGGYVYDGYLNGQLNVARALGDWHMEGMKGSDGGPLSAEPELMTTQLTEEDEFLIIGCDGIWDV  282 (365)
T ss_pred             CCCCCCCHHHHHHHHHcCCceecceECCccccccccccccccccccccCCCcceEEEEEEEECCCCCEEEEEeCCccccC
Confidence            9999999999999885                   78776642       477899999999988899999999999999


Q ss_pred             CCHHHHHHHHHHHHHhccCCCCCCCCCCCcHHHHHHHHHHHHHhCCCCCceEEEEEEccCCCccCcccc
Q 028244          135 MSSDDAVKLARYELRRRRRLPEKGDTPSSPACGAAEELVKIAYDAFSTDNISVVIVDLKAPRIRSLQNT  203 (211)
Q Consensus       135 l~~~~i~~ii~~~~~~~~~~~~~~~~~~~~~~~~a~~L~~~A~~~~~~DNiTvivv~~~~~~~~~~~~~  203 (211)
                      |+++++.+++.+.+..           ..+|..+|+.|++.|+.+++.||+|||||+|....+.....+
T Consensus       283 ls~ee~v~~i~~~l~~-----------~~~p~~aa~~Lv~~Al~rgs~DNITvIVV~l~~~~~~~~~~~  340 (365)
T PLN03145        283 FRSQNAVDFARRRLQE-----------HNDPVMCSKELVDEALKRKSGDNLAVVVVCFQSQPPPNLVAP  340 (365)
T ss_pred             cCHHHHHHHHHHHHhc-----------CCCHHHHHHHHHHHHHhCCCCCCEEEEEEEeecCCCcccccc
Confidence            9999999988877654           457899999999999999999999999999998654444333

>KOG0697 consensus Protein phosphatase 1B (formerly 2C) [Signal transduction mechanisms] Back     alignment and domain information
>KOG0698 consensus Serine/threonine protein phosphatase [Signal transduction mechanisms] Back     alignment and domain information
>COG0631 PTC1 Serine/threonine protein phosphatase [Signal transduction mechanisms] Back     alignment and domain information
>PTZ00224 protein phosphatase 2C; Provisional Back     alignment and domain information
>PF00481 PP2C: Protein phosphatase 2C; InterPro: IPR001932 This domain is found in protein phosphatase 2C, as well as other proteins eg Back     alignment and domain information
>cd00143 PP2Cc Serine/threonine phosphatases, family 2C, catalytic domain; The protein architecture and deduced catalytic mechanism of PP2C phosphatases are similar to the PP1, PP2A, PP2B family of protein Ser/Thr phosphatases, with which PP2C shares no sequence similarity Back     alignment and domain information
>smart00332 PP2Cc Serine/threonine phosphatases, family 2C, catalytic domain Back     alignment and domain information
>KOG0699 consensus Serine/threonine protein phosphatase [Signal transduction mechanisms] Back     alignment and domain information
>PRK14559 putative protein serine/threonine phosphatase; Provisional Back     alignment and domain information
>KOG0700 consensus Protein phosphatase 2C/pyruvate dehydrogenase (lipoamide) phosphatase [Signal transduction mechanisms] Back     alignment and domain information
>KOG1323 consensus Serine/threonine phosphatase [Signal transduction mechanisms] Back     alignment and domain information
>KOG1379 consensus Serine/threonine protein phosphatase [Signal transduction mechanisms] Back     alignment and domain information
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms] Back     alignment and domain information
>smart00331 PP2C_SIG Sigma factor PP2C-like phosphatases Back     alignment and domain information
>PF13672 PP2C_2: Protein phosphatase 2C; PDB: 2JFT_A 2JFS_A 2V06_A 2JFR_A 2J86_A 2J82_A 2Y09_A 2XZV_A 2CM1_A 1TXO_B Back     alignment and domain information
>TIGR02865 spore_II_E stage II sporulation protein E Back     alignment and domain information
>PF07228 SpoIIE: Stage II sporulation protein E (SpoIIE); InterPro: IPR001932 This domain is found in protein phosphatase 2C, as well as other proteins eg Back     alignment and domain information
>COG2208 RsbU Serine phosphatase RsbU, regulator of sigma subunit [Signal transduction mechanisms / Transcription] Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query211
4ds8_B343 Complex Structure Of Abscisic Acid Receptor Pyl3-(+ 2e-36
3rt0_A340 Crystal Structure Of Pyl10-Hab1 Complex In The Abse 2e-36
3ujg_B350 Crystal Structure Of Snrk2.6 In Complex With Hab1 L 2e-36
3nmt_B341 Crystal Structure Of Pyrabactin Bound Abscisic Acid 2e-36
3qn1_B337 Crystal Structure Of The Pyr1 Abscisic Acid Recepto 2e-36
3kb3_B321 Crystal Structure Of Abscisic Acid-Bound Pyl2 In Co 2e-36
3kdj_B316 Complex Structure Of (+)-Aba-Bound Pyl1 And Abi1 Le 5e-36
3nmn_B319 Crystal Structure Of Pyrabactin-Bound Abscisic Acid 7e-36
3nmv_B324 Crystal Structure Of Pyrabactin-Bound Abscisic Acid 7e-36
3jrq_A326 Crystal Structure Of (+)-aba-bound Pyl1 In Complex 8e-36
2p8e_A307 Crystal Structure Of The SerineTHREONINE PHOSPHATAS 4e-14
1a6q_A382 Crystal Structure Of The Protein SerineTHREONINE PH 4e-12
3fxj_A390 Crystal Structure Of Human Protein Phosphatase 1a ( 4e-12
2i0o_A304 Crystal Structure Of Anopheles Gambiae SerTHR PHOSP 7e-12
4da1_A389 Crystal Structure Of Branched-Chain Alpha-Ketoacid 5e-09
2iq1_A274 Crystal Structure Of Human Ppm1k Length = 274 8e-09
2pnq_A467 Crystal Structure Of Pyruvate Dehydrogenase Phospha 2e-06
3mq3_A467 Crystal Structure Of Native Bovine Pdp1c Length = 4 2e-06
2i44_A324 Crystal Structure Of Serine-Threonine Phosphatase 2 6e-05
>pdb|4DS8|B Chain B, Complex Structure Of Abscisic Acid Receptor Pyl3-(+)-Aba-Hab1 In The Presence Of Mn2+ Length = 343 Back     alignment and structure 
Iteration: 1

 Score =  148 bits (374), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 87/188 (46%), Positives = 114/188 (60%), Gaps = 30/188 (15%)
Query: 38  SLAPYSVGTTALVAILSPCQIIASNCGDSRVVLSRGKQAIPLTVDHKLDREDEVARITNG 97
           ++A  +VG+TA+VA++    I+ SNCGDSR VL RGK+A+PL+VDHK DREDE ARI N 
Sbjct: 151 AVASETVGSTAVVALVCSSHIVVSNCGDSRAVLFRGKEAMPLSVDHKPDREDEYARIENA 210
Query: 98  ----------------------GDHDLKPWVIAEPEVTFMTRSEDDEFLILASDGLWDVM 135
                                 GD  LKP+VI EPEVTFM RS +DE LILASDGLWDVM
Sbjct: 211 GGKVIQWQGARVFGVLAMSRSIGDRYLKPYVIPEPEVTFMPRSREDECLILASDGLWDVM 270
Query: 136 SSDDAVKLAR------YEXXXXXXXPEKGDTPSSPAC-GAAEELVKIAYDAFSTDNISVV 188
           ++ +  ++AR      ++        E+G     PAC  AA+ L  +A    S DNIS++
Sbjct: 271 NNQEVCEIARRRILMWHKKNGAPPLAERGKG-IDPACQAAADYLSMLALQKGSKDNISII 329
Query: 189 IVDLKAPR 196
           ++DLKA R
Sbjct: 330 VIDLKAQR 337
>pdb|3RT0|A Chain A, Crystal Structure Of Pyl10-Hab1 Complex In The Absence Of Abscisic Acid (Aba) Length = 340 Back     alignment and structure
>pdb|3UJG|B Chain B, Crystal Structure Of Snrk2.6 In Complex With Hab1 Length = 350 Back     alignment and structure
>pdb|3NMT|B Chain B, Crystal Structure Of Pyrabactin Bound Abscisic Acid Receptor Pyl2 Mutant A93f In Complex With Type 2c Protein Phosphatase Hab1 Length = 341 Back     alignment and structure
>pdb|3QN1|B Chain B, Crystal Structure Of The Pyr1 Abscisic Acid Receptor In Complex With The Hab1 Type 2c Phosphatase Catalytic Domain Length = 337 Back     alignment and structure
>pdb|3KB3|B Chain B, Crystal Structure Of Abscisic Acid-Bound Pyl2 In Complex With Hab1 Length = 321 Back     alignment and structure
>pdb|3KDJ|B Chain B, Complex Structure Of (+)-Aba-Bound Pyl1 And Abi1 Length = 316 Back     alignment and structure
>pdb|3NMN|B Chain B, Crystal Structure Of Pyrabactin-Bound Abscisic Acid Receptor Pyl1 In Complex With Type 2c Protein Phosphatase Abi1 Length = 319 Back     alignment and structure
>pdb|3NMV|B Chain B, Crystal Structure Of Pyrabactin-Bound Abscisic Acid Receptor Pyl2 Mutant A93f In Complex With Type 2c Protein Phosphatase Abi2 Length = 324 Back     alignment and structure
>pdb|3JRQ|A Chain A, Crystal Structure Of (+)-aba-bound Pyl1 In Complex With Abi1 Length = 326 Back     alignment and structure
>pdb|2P8E|A Chain A, Crystal Structure Of The SerineTHREONINE PHOSPHATASE Domain Of Human Ppm1b Length = 307 Back     alignment and structure
>pdb|1A6Q|A Chain A, Crystal Structure Of The Protein SerineTHREONINE PHOSPHATASE 2C AT 2 A Resolution Length = 382 Back     alignment and structure
>pdb|3FXJ|A Chain A, Crystal Structure Of Human Protein Phosphatase 1a (Ppm1a) Bound With Phosphate At 3 Mm Of Mn2+ Length = 390 Back     alignment and structure
>pdb|2I0O|A Chain A, Crystal Structure Of Anopheles Gambiae SerTHR PHOSPHATASE COMPLEXED With Zn2+ Length = 304 Back     alignment and structure
>pdb|4DA1|A Chain A, Crystal Structure Of Branched-Chain Alpha-Ketoacid Dehydrogenase Phosphatase With Mg (Ii) Ions At The Active Site Length = 389 Back     alignment and structure
>pdb|2IQ1|A Chain A, Crystal Structure Of Human Ppm1k Length = 274 Back     alignment and structure
>pdb|2PNQ|A Chain A, Crystal Structure Of Pyruvate Dehydrogenase Phosphatase 1 (Pdp1) Length = 467 Back     alignment and structure
>pdb|3MQ3|A Chain A, Crystal Structure Of Native Bovine Pdp1c Length = 467 Back     alignment and structure
>pdb|2I44|A Chain A, Crystal Structure Of Serine-Threonine Phosphatase 2c From Toxoplasma Gondii Length = 324 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query211
3kdj_B316 Protein phosphatase 2C 56; ABA, PYL1, abscisic aci 1e-66
3qn1_B337 Protein phosphatase 2C 16; start domain, BET V dom 4e-65
1a6q_A382 Phosphatase 2C; catalytic mechanism, metalloenzyme 1e-60
2p8e_A307 PPM1B beta isoform variant 6; structural genomics, 2e-60
2iq1_A274 Protein phosphatase 2C kappa, PPM1K; structural ge 6e-58
2i44_A324 Serine-threonine phosphatase 2C; PSI-2, 8817Z, str 3e-56
4da1_A389 Protein phosphatase 1K, mitochondrial; metal-ION-a 9e-56
2i0o_A304 Ser/Thr phosphatase; beta sandwich, structural gen 2e-55
3d8k_A377 PP2C, protein phosphatase 2C; nysgrc, PSI-II, STR 3e-48
2isn_A364 NYSGXRC-8828Z, phosphatase; pathogenic strain, pra 3e-42
2j4o_A401 Mitogen-activated protein kinase kinase kinase 7-i 2e-40
2irm_A358 Mitogen-activated protein kinase kinase kinase 7 i 4e-39
2pnq_A467 [pyruvate dehydrogenase [lipoamide]]-phosphatase 1 8e-29
2pk0_A250 Serine/threonine protein phosphatase STP1; SI moti 3e-14
1txo_A237 Putative bacterial enzyme; serine/threonine protei 2e-13
2jfr_A234 Ser-Thr phosphatase MSPP; hydrolase, PPM phosphata 7e-13
2j82_A240 TPPHA, protein serine-threonine phosphatase; PP2C 9e-13
3rnr_A211 Stage II sporulation E family protein; structural 7e-10
>3kdj_B Protein phosphatase 2C 56; ABA, PYL1, abscisic acid signaling pathway, cell membr hydrolase, magnesium, manganese, metal-binding, nucleus; HET: A8S; 1.88A {Arabidopsis thaliana} PDB: 3nmn_B* 3jrq_A* 3ujk_A 3nmv_B 3ujl_B* Length = 316 Back     alignment and structure
 Score =  206 bits (526), Expect = 1e-66
 Identities = 95/234 (40%), Positives = 127/234 (54%), Gaps = 40/234 (17%)

Query: 1   MVAEEWGREAG----NDGWHRRWEAALCRSYERADDVFKDNSLAPYSVGTTALVAILSPC 56
            +AEE  +E       D W  +W+ AL  S+ R D   +  S+AP +VG+T++VA++ P 
Sbjct: 77  ALAEEIAKEKPMLSDGDTWLEKWKKALFNSFLRVDSEIE--SVAPETVGSTSVVAVVFPS 134

Query: 57  QIIASNCGDSRVVLSRGKQAIPLTVDHKLDREDEVARIT--------------NG----- 97
            I  +NCGDSR VL RGK A+PL+VDHK DREDE ARI                G     
Sbjct: 135 HIFVANCGDSRAVLCRGKTALPLSVDHKPDREDEAARIEAAGGKVIQWNGARVFGVLAMS 194

Query: 98  ---GDHDLKPWVIAEPEVTFMTRSEDDEFLILASDGLWDVMSSDDAVKLARYELRRRRRL 154
              GD  LKP +I +PEVT + R ++D+ LILASDG+WDVM+ ++A ++AR  +    + 
Sbjct: 195 RSIGDRYLKPSIIPDPEVTAVKRVKEDDCLILASDGVWDVMTDEEACEMARKRILLWHKK 254

Query: 155 PEKGDTPSSPACG------------AAEELVKIAYDAFSTDNISVVIVDLKAPR 196
                  S  A              AAE L K+A    S DNISVV+VDLK  R
Sbjct: 255 NAVAGGASLLADERRKEGKDPAAMSAAEYLSKLAIQRGSKDNISVVVVDLKPRR 308
>3qn1_B Protein phosphatase 2C 16; start domain, BET V domain, PYR/PYL/RCAR, PP2C, abscisic ACI receptor, type 2C protein phosphatase; HET: A8S; 1.80A {Arabidopsis thaliana} PDB: 3ujg_B 3nmt_B* 3rt0_A 3kb3_B* Length = 337 Back     alignment and structure
>1a6q_A Phosphatase 2C; catalytic mechanism, metalloenzyme, transductuin, hydrolase; 2.00A {Homo sapiens} SCOP: a.159.1.1 d.219.1.1 PDB: 3fxk_A 3fxj_A 3fxl_A* 3fxm_A* 3fxo_A Length = 382 Back     alignment and structure
>2p8e_A PPM1B beta isoform variant 6; structural genomics, hydrolase, PSI-2, protein structure initiative; 1.82A {Homo sapiens} Length = 307 Back     alignment and structure
>2iq1_A Protein phosphatase 2C kappa, PPM1K; structural genomics, PSI-2, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.25A {Homo sapiens} Length = 274 Back     alignment and structure
>2i44_A Serine-threonine phosphatase 2C; PSI-2, 8817Z, structural genomics, protein structure initiative; 2.04A {Toxoplasma gondii} Length = 324 Back     alignment and structure
>4da1_A Protein phosphatase 1K, mitochondrial; metal-ION-assisted catalysis, dehydrogenase phosphatase, hydrolase; 2.38A {Homo sapiens} PDB: 3qht_A 1l2n_A Length = 389 Back     alignment and structure
>2i0o_A Ser/Thr phosphatase; beta sandwich, structural genomics, PSI, protei structure initiative, NEW YORK SGX research center for STRU genomics; 1.70A {Anopheles gambiae} Length = 304 Back     alignment and structure
>3d8k_A PP2C, protein phosphatase 2C; nysgrc, PSI-II, STR genomics, protein structure initiative, NEW YORK structural research consortium, nysgxrc; 2.71A {Toxoplasma gondii} Length = 377 Back     alignment and structure
>2isn_A NYSGXRC-8828Z, phosphatase; pathogenic strain, praseodymium, sulfate structural genomics, PSI-2, protein structure initiative; 1.90A {Toxoplasma gondii} Length = 364 Back     alignment and structure
>2j4o_A Mitogen-activated protein kinase kinase kinase 7-interacting protein 1; TGF-beta, pseudo-phosphatase, TAK1 binding protein, protein binding; 2.25A {Homo sapiens} PDB: 2pom_A 2pop_A Length = 401 Back     alignment and structure
>2irm_A Mitogen-activated protein kinase kinase kinase 7 interacting protein 1; TAK1-binding protein, TAB1; 3.00A {Anopheles gambiae} Length = 358 Back     alignment and structure
>2pnq_A [pyruvate dehydrogenase [lipoamide]]-phosphatase 1; pyruvate dehydrogenase phosphatase 1, catalytic subunit, PDP1C, hydrolase; 1.81A {Rattus norvegicus} PDB: 3n3c_A 3mq3_A Length = 467 Back     alignment and structure
>2pk0_A Serine/threonine protein phosphatase STP1; SI motif, signaling protein; 2.65A {Streptococcus agalactiae} Length = 250 Back     alignment and structure
>1txo_A Putative bacterial enzyme; serine/threonine protein phosphatases, PSTP/PPP, structural genomics, PSI, protein structure initiative; 1.95A {Mycobacterium tuberculosis} SCOP: d.219.1.1 PDB: 2cm1_A Length = 237 Back     alignment and structure
>2jfr_A Ser-Thr phosphatase MSPP; hydrolase, PPM phosphatase, manganese, phosphate; 0.83A {Mycobacterium smegmatis} PDB: 2jfs_A 2jft_A 2v06_A Length = 234 Back     alignment and structure
>2j82_A TPPHA, protein serine-threonine phosphatase; PP2C family phosphatase, hydrolase; 1.28A {Synechococcus elongatus} PDB: 2j86_A 2y09_A 2xzv_A Length = 240 Back     alignment and structure
>3rnr_A Stage II sporulation E family protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MSE; 2.00A {Thermanaerovibrio acidaminovorans} Length = 211 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query211
2p8e_A307 PPM1B beta isoform variant 6; structural genomics, 100.0
3kdj_B316 Protein phosphatase 2C 56; ABA, PYL1, abscisic aci 100.0
3qn1_B337 Protein phosphatase 2C 16; start domain, BET V dom 100.0
1a6q_A382 Phosphatase 2C; catalytic mechanism, metalloenzyme 100.0
2iq1_A274 Protein phosphatase 2C kappa, PPM1K; structural ge 100.0
2irm_A358 Mitogen-activated protein kinase kinase kinase 7 i 100.0
2i0o_A304 Ser/Thr phosphatase; beta sandwich, structural gen 100.0
4da1_A389 Protein phosphatase 1K, mitochondrial; metal-ION-a 100.0
2i44_A324 Serine-threonine phosphatase 2C; PSI-2, 8817Z, str 100.0
2j4o_A401 Mitogen-activated protein kinase kinase kinase 7-i 100.0
3d8k_A377 PP2C, protein phosphatase 2C; nysgrc, PSI-II, STR 100.0
2isn_A364 NYSGXRC-8828Z, phosphatase; pathogenic strain, pra 100.0
2pnq_A467 [pyruvate dehydrogenase [lipoamide]]-phosphatase 1 100.0
2pk0_A250 Serine/threonine protein phosphatase STP1; SI moti 99.97
1txo_A237 Putative bacterial enzyme; serine/threonine protei 99.97
2j82_A240 TPPHA, protein serine-threonine phosphatase; PP2C 99.96
2jfr_A234 Ser-Thr phosphatase MSPP; hydrolase, PPM phosphata 99.96
3rnr_A211 Stage II sporulation E family protein; structural 99.96
3t91_A242 Stage II sporulation protein E; SPOIIE, phosphatas 99.78
3pu9_A242 Protein serine/threonine phosphatase; PSI-biology, 99.74
3f79_A255 Probable two-component response regulator; adaptor 99.64
3zt9_A193 Serine phosphatase; hydrolase, signal transduction 99.55
3ke6_A 399 Protein RV1364C/MT1410; anti-sigma factor, anti-si 99.05
3eq2_A394 Probable two-component response regulator; adaptor 98.21
>2p8e_A PPM1B beta isoform variant 6; structural genomics, hydrolase, PSI-2, protein structure initiative; 1.82A {Homo sapiens} Back     alignment and structure
Probab=100.00  E-value=3.6e-37  Score=259.37  Aligned_cols=169  Identities=35%  Similarity=0.464  Sum_probs=147.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHhhcC---CCCCCCCceeEEEEEeCCeEEEEeccccceEEEeCCccccCCCCCCCCChHHHH
Q 028244           16 HRRWEAALCRSYERADDVFKDNS---LAPYSVGTTALVAILSPCQIIASNCGDSRVVLSRGKQAIPLTVDHKLDREDEVA   92 (211)
Q Consensus        16 ~~~~~~~l~~a~~~~~~~l~~~~---~~~~~~GtT~~~~~i~~~~~~~anvGDSr~~l~~~~~~~~lt~dH~~~~~~e~~   92 (211)
                      .+.+.++|.++|.++|+.|....   .....+|||++++++.++++|++||||||+|++|++++.+||.||++.++.|+.
T Consensus       101 ~~~~~~~l~~a~~~~~~~i~~~~~~~~~~~~~GtT~~~~~i~~~~l~vanvGDSRa~l~r~g~~~~lT~DH~~~~~~E~~  180 (307)
T 2p8e_A          101 VENVKNGIRTGFLKIDEYMRNFSDLRNGMDRSGSTAVGVMISPKHIYFINCGDSRAVLYRNGQVCFSTQDHKPCNPREKE  180 (307)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHTSTTTC---CCCEECEEEEEECSSEEEEEEESSCEEEEEETTEEEEECCCCCTTSHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHhhhhhccCCCCCCCeEEEEEEECCcEEEEEccCcEEEEEECCccccCCCCCCCCCHHHHH
Confidence            45688999999999999999864   234679999999999999999999999999999999999999999999999999


Q ss_pred             HHHh-------------------hCCCCCC---------CccccCCcEEEEEecCCCeEEEEEcCCccccCCHHHHHHHH
Q 028244           93 RITN-------------------GGDHDLK---------PWVIAEPEVTFMTRSEDDEFLILASDGLWDVMSSDDAVKLA  144 (211)
Q Consensus        93 ri~~-------------------lG~~~~~---------~~v~~~p~i~~~~~~~~~~~lil~SDGl~d~l~~~~i~~ii  144 (211)
                      ||..                   ||+..+|         +.+++.|++..+.+.++|+||||||||||++++++++.+++
T Consensus       181 rI~~~gg~v~~~rv~g~l~ltRalGd~~~k~~~~~~~~~~~v~~~pdv~~~~l~~~d~~llL~SDGl~d~ls~~ei~~~v  260 (307)
T 2p8e_A          181 RIQNAGGSVMIQRVNGSLAVSRALGDYDYKCVDGKGPTEQLVSPEPEVYEILRAEEDEFIILACDGIWDVMSNEELCEYV  260 (307)
T ss_dssp             HHHHTTCCEETTEETTTBSCSBCEECGGGSCCTTCCGGGSSSBCCCEEEEEECCTTEEEEEEECHHHHTTSCHHHHHHHH
T ss_pred             HHHHcCCEEEeCcccCeEeccccccCHHHhcCcccCCCCCeEeccCeEEEEEcCCCCeEEEEECCCcccCCCHHHHHHHH
Confidence            9764                   6776655         34688999999988888889999999999999999999999


Q ss_pred             HHHHHhccCCCCCCCCCCCcHHHHHHHHHHHHHhCCCCCceEEEEEEccCC
Q 028244          145 RYELRRRRRLPEKGDTPSSPACGAAEELVKIAYDAFSTDNISVVIVDLKAP  195 (211)
Q Consensus       145 ~~~~~~~~~~~~~~~~~~~~~~~~a~~L~~~A~~~~~~DNiTvivv~~~~~  195 (211)
                      ...+..           ..+++.+|+.|++.|+.+|+.||+|||||++...
T Consensus       261 ~~~~~~-----------~~~~~~~a~~Lv~~A~~~g~~DNiTvivv~~~~~  300 (307)
T 2p8e_A          261 KSRLEV-----------SDDLENVCNWVVDTCLHKGSRDNMSIVLVCFSNE  300 (307)
T ss_dssp             HHHHTT-----------CCCHHHHHHHHHHHHHHTTCCSCEEEEEEEC---
T ss_pred             HHHHhc-----------CCCHHHHHHHHHHHHHHcCCCCCeEEEEEECCCC
Confidence            876543           3579999999999999999999999999999764
>3kdj_B Protein phosphatase 2C 56; ABA, PYL1, abscisic acid signaling pathway, cell membr hydrolase, magnesium, manganese, metal-binding, nucleus; HET: A8S; 1.88A {Arabidopsis thaliana} PDB: 3nmn_B* 3jrq_A* 3ujk_A 3nmv_B 3ujl_B* Back     alignment and structure
>3qn1_B Protein phosphatase 2C 16; start domain, BET V domain, PYR/PYL/RCAR, PP2C, abscisic ACI receptor, type 2C protein phosphatase; HET: A8S; 1.80A {Arabidopsis thaliana} PDB: 3zvu_B* 3ujg_B 3nmt_B* 4ds8_B* 3rt0_A 3kb3_B* Back     alignment and structure
>1a6q_A Phosphatase 2C; catalytic mechanism, metalloenzyme, transductuin, hydrolase; 2.00A {Homo sapiens} SCOP: a.159.1.1 d.219.1.1 PDB: 3fxk_A 3fxj_A 3fxl_A* 3fxm_A* 3fxo_A Back     alignment and structure
>2iq1_A Protein phosphatase 2C kappa, PPM1K; structural genomics, PSI-2, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.25A {Homo sapiens} Back     alignment and structure
>2irm_A Mitogen-activated protein kinase kinase kinase 7 interacting protein 1; TAK1-binding protein, TAB1; 3.00A {Anopheles gambiae} Back     alignment and structure
>2i0o_A Ser/Thr phosphatase; beta sandwich, structural genomics, PSI, protei structure initiative, NEW YORK SGX research center for STRU genomics; 1.70A {Anopheles gambiae} Back     alignment and structure
>4da1_A Protein phosphatase 1K, mitochondrial; metal-ION-assisted catalysis, dehydrogenase phosphatase, hydrolase; 2.38A {Homo sapiens} PDB: 3qht_A 1l2n_A Back     alignment and structure
>2i44_A Serine-threonine phosphatase 2C; PSI-2, 8817Z, structural genomics, protein structure initiative; 2.04A {Toxoplasma gondii} Back     alignment and structure
>2j4o_A Mitogen-activated protein kinase kinase kinase 7-interacting protein 1; TGF-beta, pseudo-phosphatase, TAK1 binding protein, protein binding; 2.25A {Homo sapiens} PDB: 2pom_A 2pop_A Back     alignment and structure
>3d8k_A PP2C, protein phosphatase 2C; nysgrc, PSI-II, STR genomics, protein structure initiative, NEW YORK structural research consortium, nysgxrc; 2.71A {Toxoplasma gondii} Back     alignment and structure
>2isn_A NYSGXRC-8828Z, phosphatase; pathogenic strain, praseodymium, sulfate structural genomics, PSI-2, protein structure initiative; 1.90A {Toxoplasma gondii} Back     alignment and structure
>2pnq_A [pyruvate dehydrogenase [lipoamide]]-phosphatase 1; pyruvate dehydrogenase phosphatase 1, catalytic subunit, PDP1C, hydrolase; 1.81A {Rattus norvegicus} PDB: 3n3c_A 3mq3_A Back     alignment and structure
>2pk0_A Serine/threonine protein phosphatase STP1; SI motif, signaling protein; 2.65A {Streptococcus agalactiae} Back     alignment and structure
>1txo_A Putative bacterial enzyme; serine/threonine protein phosphatases, PSTP/PPP, structural genomics, PSI, protein structure initiative; 1.95A {Mycobacterium tuberculosis} SCOP: d.219.1.1 PDB: 2cm1_A Back     alignment and structure
>2j82_A TPPHA, protein serine-threonine phosphatase; PP2C family phosphatase, hydrolase; 1.28A {Synechococcus elongatus} PDB: 2j86_A 2y09_A 2xzv_A Back     alignment and structure
>2jfr_A Ser-Thr phosphatase MSPP; hydrolase, PPM phosphatase, manganese, phosphate; 0.83A {Mycobacterium smegmatis} PDB: 2jfs_A 2jft_A 2v06_A Back     alignment and structure
>3rnr_A Stage II sporulation E family protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MSE; 2.00A {Thermanaerovibrio acidaminovorans} Back     alignment and structure
>3t91_A Stage II sporulation protein E; SPOIIE, phosphatase, manganese binding, PP2C PH domain; HET: GL0 MAN; 2.64A {Bacillus subtilis} PDB: 3t9q_A* Back     alignment and structure
>3pu9_A Protein serine/threonine phosphatase; PSI-biology, MCSG, structural genomics; HET: MSE; 1.55A {Sphaerobacter thermophilus} Back     alignment and structure
>3f79_A Probable two-component response regulator; adaptor, signaling protein; 2.80A {Pseudomonas aeruginosa} PDB: 3es2_A Back     alignment and structure
>3zt9_A Serine phosphatase; hydrolase, signal transduction, protein protein interaction,; HET: PEG; 1.75A {Moorella thermoacetica} Back     alignment and structure
>3ke6_A Protein RV1364C/MT1410; anti-sigma factor, anti-sigma factor antagonist, phosphatase serine kinase, ATPase, unknown function; 2.60A {Mycobacterium tuberculosis} Back     alignment and structure
>3eq2_A Probable two-component response regulator; adaptor sigmas, signaling protein; 3.40A {Pseudomonas aeruginosa} PDB: 3f7a_A Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 211
d1a6qa2295 d.219.1.1 (A:2-296) Protein serine/threonine phosp 9e-23
d1txoa_235 d.219.1.1 (A:) putative serine/threonine phosphata 5e-18
>d1a6qa2 d.219.1.1 (A:2-296) Protein serine/threonine phosphatase 2C, catalytic domain {Human (Homo sapiens) [TaxId: 9606]} Length = 295 Back     information, alignment and structure

class: Alpha and beta proteins (a+b)
fold: PP2C-like
superfamily: PP2C-like
family: PP2C-like
domain: Protein serine/threonine phosphatase 2C, catalytic domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 91.2 bits (225), Expect = 9e-23
 Identities = 57/220 (25%), Positives = 85/220 (38%), Gaps = 43/220 (19%)

Query: 8   REAGNDGWHRRWEAALCRSYERADDVFKDNSLAPY---SVGTTALVAILSPCQIIASNCG 64
           + +         +  +   +   D+  +  S   +     G+TA+  ++SP      NCG
Sbjct: 85  KGSAGAPSVENVKNGIRTGFLEIDEHMRVMSEKKHGADRSGSTAVGVLISPQHTYFINCG 144

Query: 65  DSRVVLSRGKQAIPLTVDHKLDREDEVARITNG-------------------GDHDLK-- 103
           DSR +L R ++    T DHK     E  RI N                    GD D K  
Sbjct: 145 DSRGLLCRNRKVHFFTQDHKPSNPLEKERIQNAGGSVMIQRVNGSLAVSRALGDFDYKCV 204

Query: 104 -------PWVIAEPEVTFMTRS-EDDEFLILASDGLWDVMSSDDAVKLARYELRRRRRLP 155
                    V  EPEV  + RS EDD+F+ILA DG+WDVM +++     R  L     L 
Sbjct: 205 HGKGPTEQLVSPEPEVHDIERSEEDDQFIILACDGIWDVMGNEELCDFVRSRLEVTDDLE 264

Query: 156 EKGDTPSSPACGAAEELVKIAYDAFSTDNISVVIVDLKAP 195
           +              E+V       S DN+SV+++     
Sbjct: 265 K-----------VCNEVVDTCLYKGSRDNMSVILICFPNA 293
>d1txoa_ d.219.1.1 (A:) putative serine/threonine phosphatase pstp/ppp {Mycobacterium tuberculosis [TaxId: 1773]} Length = 235 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query211
d1a6qa2295 Protein serine/threonine phosphatase 2C, catalytic 100.0
d1txoa_235 putative serine/threonine phosphatase pstp/ppp {My 100.0
>d1a6qa2 d.219.1.1 (A:2-296) Protein serine/threonine phosphatase 2C, catalytic domain {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
class: Alpha and beta proteins (a+b)
fold: PP2C-like
superfamily: PP2C-like
family: PP2C-like
domain: Protein serine/threonine phosphatase 2C, catalytic domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=2e-38  Score=263.67  Aligned_cols=171  Identities=33%  Similarity=0.457  Sum_probs=153.5

Q ss_pred             chHHHHHHHHHHHHHHHHHHHhhcC---CCCCCCCceeEEEEEeCCeEEEEeccccceEEEeCCccccCCCCCCCCChHH
Q 028244           14 GWHRRWEAALCRSYERADDVFKDNS---LAPYSVGTTALVAILSPCQIIASNCGDSRVVLSRGKQAIPLTVDHKLDREDE   90 (211)
Q Consensus        14 ~~~~~~~~~l~~a~~~~~~~l~~~~---~~~~~~GtT~~~~~i~~~~~~~anvGDSr~~l~~~~~~~~lt~dH~~~~~~e   90 (211)
                      ...+++.++|.++|.++|+.+....   .....+|||++++++.++++|++|+||||+|+++++.+++||.||++.++.|
T Consensus        91 ~~~~~~~~al~~a~~~~~~~~~~~~~~~~~~~~~GtTa~~~~i~~~~l~vanvGDSR~~l~~~~~~~~lT~dH~~~~~~E  170 (295)
T d1a6qa2          91 PSVENVKNGIRTGFLEIDEHMRVMSEKKHGADRSGSTAVGVLISPQHTYFINCGDSRGLLCRNRKVHFFTQDHKPSNPLE  170 (295)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCCCEECEEEEEECSSEEEEEEESSCEEEEEETTEEEEECCCCCTTSHHH
T ss_pred             chHHHHHHHHHHHHHHHHHHHhhhhhhccCcCCCCCeEEEEEeeCCEEEEEecCCCeEEEeecccceeeccccCcccHHH
Confidence            4567899999999999999887543   5667899999999999999999999999999999999999999999999999


Q ss_pred             HHHHHh-------------------hCCCCCC---------CccccCCcEEEEEec-CCCeEEEEEcCCccccCCHHHHH
Q 028244           91 VARITN-------------------GGDHDLK---------PWVIAEPEVTFMTRS-EDDEFLILASDGLWDVMSSDDAV  141 (211)
Q Consensus        91 ~~ri~~-------------------lG~~~~~---------~~v~~~p~i~~~~~~-~~~~~lil~SDGl~d~l~~~~i~  141 (211)
                      +.|+..                   +||+.+|         +.+++.|++..+.+. ++++|||||||||||+|+++++.
T Consensus       171 ~~Ri~~~gg~v~~~r~~g~l~~tRa~Gd~~~k~~~~~~~~~~~v~~~Pdi~~~~~~~~~~~flvL~SDGl~d~l~~~ei~  250 (295)
T d1a6qa2         171 KERIQNAGGSVMIQRVNGSLAVSRALGDFDYKCVHGKGPTEQLVSPEPEVHDIERSEEDDQFIILACDGIWDVMGNEELC  250 (295)
T ss_dssp             HHHHHHTTCCEETTEETTTBSCSBCEECGGGSCCTTCCGGGSSSBCCCEEEEEECCTTTEEEEEEECHHHHTTSCHHHHH
T ss_pred             HhhHhhcCCcccccccCCceeeeeccCcHHhhhccccCcccccccccccceEEEeecccceeEeeecCcccccCCHHHHH
Confidence            999976                   7777666         359999999998875 56779999999999999999999


Q ss_pred             HHHHHHHHhccCCCCCCCCCCCcHHHHHHHHHHHHHhCCCCCceEEEEEEccCC
Q 028244          142 KLARYELRRRRRLPEKGDTPSSPACGAAEELVKIAYDAFSTDNISVVIVDLKAP  195 (211)
Q Consensus       142 ~ii~~~~~~~~~~~~~~~~~~~~~~~~a~~L~~~A~~~~~~DNiTvivv~~~~~  195 (211)
                      ++++..+..           ..+++.+|+.|++.|+.+++.||+|||||+|.+.
T Consensus       251 ~~v~~~~~~-----------~~~~~~~a~~Lv~~A~~~gs~DNiTvivv~~~~~  293 (295)
T d1a6qa2         251 DFVRSRLEV-----------TDDLEKVCNEVVDTCLYKGSRDNMSVILICFPNA  293 (295)
T ss_dssp             HHHHHHHTT-----------CCCHHHHHHHHHHHHHHTTCCSCEEEEEEECTTS
T ss_pred             HHHHHHhhc-----------CCCHHHHHHHHHHHHHhcCCCCCeEEEEEeccCC
Confidence            999887655           5689999999999999999999999999999864
>d1txoa_ d.219.1.1 (A:) putative serine/threonine phosphatase pstp/ppp {Mycobacterium tuberculosis [TaxId: 1773]} Back     information, alignment and structure