Citrus Sinensis ID: 028254

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-
MTEALQLPVIDLSSPDRLSTAKSIRQACIDYGFFYLVNHGVEEELISQMFNESKKFFSLQLEDKMKLARKEHRGYTALCDEILDPSSTSEGDPKESFYIGPLEGTLSSMNQWPSLEILPTWRSTMEYYHQKVLSAGRRLIHLIALALNLNEDFFEKVGALDAPMAFLRLLHYPGELVSSNQEVCGASAHSDYGMITLLATDGVPGLQACLS
ccccccccEEEcccccHHHHHHHHHHHHHHccEEEEEcccccHHHHHHHHHHHHHHHcccHHHHHHccccccccccccccEEcccccccccccEEEEEEcccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccEEEcccccccccccccccccccccccccccEEEccccccEEEEcc
ccccccccEEEcccccHHHHHHHHHHHHHHcccEEEEcccccHHHHHHHHHHHHHHHcccHHHHHHHHccccccccEEEEccccccccccccHHHEEEEEccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHccccccEEEEEEccccccccccccEcccccccccccEEEEEcccccccEEEEc
mtealqlpvidlsspdrlsTAKSIRQACIDYGFFYLVNHGVEEELISQMFNESKKFFSLQLEDKMKLARKEHRGYTAlcdeildpsstsegdpkesfyigplegtlssmnqwpsleilptwRSTMEYYHQKVLSAGRRLIHLIALALNLNEDFFEKVGALDAPMAFLRLLhypgelvssnqevcgasahsdYGMITLLAtdgvpglqacls
mtealqlpvidlsspdrlSTAKSIRQACIDYGFFYLVNHGVEEELISQMFNESKKFFSLQLEDKMKLARKEHRGytalcdeildpsstsegdpkeSFYIGPLEGTLSSMNQWPSLEILPTWRSTMEYYHQKVLSAGRRLIHLIALALNLNEDFFEKVGALDAPMAFLRLLHYPGELVSSNQEVCGASAHSDYGMITLLATDGVPGLQACLS
MTEALQLPVIDLSSPDRLSTAKSIRQACIDYGFFYLVNHGVEEELISQMFNESKKFFSLQLEDKMKLARKEHRGYTALCDEILDPSSTSEGDPKESFYIGPLEGTLSSMNQWPSLEILPTWRSTMEYYHQKVLSAGrrlihlialalnlnEDFFEKVGALDAPMAFLRLLHYPGELVSSNQEVCGASAHSDYGMITLLATDGVPGLQACLS
*********************KSIRQACIDYGFFYLVNHGVEEELISQMFNESKKFFSLQLEDKMKLARKEHRGYTALCDEI**************FYIGPLEGTLSSMNQWPSLEILPTWRSTMEYYHQKVLSAGRRLIHLIALALNLNEDFFEKVGALDAPMAFLRLLHYPGELVSSNQEVCGASAHSDYGMITLLATDGVPGL*****
*TEALQLPVIDLSSPDRLSTAKSIRQACIDYGFFYLVNHGVEEELISQMFNESKKFFSLQLEDKMKLARKEHRGYT**************GDPKESFYIGPLEGTLSSMNQWPSLEILPTWRSTMEYYHQKVLSAGRRLIHLIALALNLNEDFFEKVGALDAPMAFLRLLHYPGELV********ASAHSDYGMITLLATDGVPGLQACLS
MTEALQLPVIDLSSPDRLSTAKSIRQACIDYGFFYLVNHGVEEELISQMFNESKKFFSLQLEDKMKLARKEHRGYTALCDEILDPSSTSEGDPKESFYIGPLEGTLSSMNQWPSLEILPTWRSTMEYYHQKVLSAGRRLIHLIALALNLNEDFFEKVGALDAPMAFLRLLHYPGELVSSNQEVCGASAHSDYGMITLLATDGVPGLQACLS
****LQLPVIDLSSPDRLSTAKSIRQACIDYGFFYLVNHGVEEELISQMFNESKKFFSLQLEDKMKLARKEHRGYTALCDEILDPSSTSEGDPKESFYIGPLEGTLSSMNQWPSLEILPTWRSTMEYYHQKVLSAGRRLIHLIALALNLNEDFFEKVGALDAPMAFLRLLHYPGELVSSNQEVCGASAHSDYGMITLLATDGVPGLQACLS
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MTEALQLPVIDLSSPDRLSTAKSIRQACIDYGFFYLVNHGVEEELISQMFNESKKFFSLQLEDKMKLARKEHRGYTALCDEILDPSSTSEGDPKESFYIGPLEGTLSSMNQWPSLEILPTWRSTMEYYHQKVLSAGRRLIHLIALALNLNEDFFEKVGALDAPMAFLRLLHYPGELVSSNQEVCGASAHSDYGMITLLATDGVPGLQACLS
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query211 2.2.26 [Sep-21-2011]
A6BM06 368 1-aminocyclopropane-1-car N/A no 0.924 0.529 0.336 2e-24
Q76NT9 368 1-aminocyclopropane-1-car yes no 0.924 0.529 0.336 2e-24
Q54RA4 363 Probable iron/ascorbate o no no 0.938 0.545 0.333 2e-24
Q7LL04 321 UPF0676 protein C1494.01 yes no 0.919 0.604 0.334 7e-17
Q7XZQ8 365 Flavone synthase OS=Petro N/A no 0.924 0.534 0.272 8e-14
P51091357 Leucoanthocyanidin dioxyg N/A no 0.957 0.565 0.258 2e-13
Q40062 339 2'-deoxymugineic-acid 2'- N/A no 0.928 0.578 0.276 3e-13
O04395291 Flavonol synthase/flavano N/A no 0.919 0.666 0.251 3e-13
Q9FFQ4325 Probable flavonol synthas no no 0.919 0.596 0.281 4e-13
Q7XZQ7 368 Flavanone 3-dioxygenase O N/A no 0.924 0.529 0.258 6e-13
>sp|A6BM06|ACCO1_DICMU 1-aminocyclopropane-1-carboxylate oxidase OS=Dictyostelium mucoroides GN=aco PE=3 SV=1 Back     alignment and function desciption
 Score =  112 bits (280), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 84/250 (33%), Positives = 126/250 (50%), Gaps = 55/250 (22%)

Query: 6   QLPVIDLSS-----PDRLSTAKSIRQACIDYGFFYLVNHGVEEELISQMFNESKKFFSLQ 60
           +LP+ID+SS      D+   AK I +AC +YGFFY+ NHGV++ELI  + N  KKFFSL 
Sbjct: 7   KLPIIDISSFQNNENDKNQVAKEINKACKEYGFFYIKNHGVDQELIENLQNVIKKFFSLP 66

Query: 61  LEDKMK----LARKEHRGYTALCDEILDPSSTSEGDPKES-FYIGPLEGTLSSMNQWPSL 115
           LE KMK    L  +E  G+  +  EI    +  + D KE  +Y   ++G +++++  P  
Sbjct: 67  LEIKMKWKMGLTNREWLGFFKVGQEI----TYGQVDWKEGCYYSSEMDGDINTIHNVP-- 120

Query: 116 EILPT-----------WRSTMEYYHQKVLSAGRRLIHLIALALNLNEDFFEKVGALDAPM 164
            + PT           ++ST+  Y +K+    +++I  I+L+LNL +D+F K    D P 
Sbjct: 121 -LYPTAEQEEQYEIQGFKSTIHTYIEKLTHLSQQIIEAISLSLNLPQDYFFKNYTYD-PF 178

Query: 165 AFLRLLHYP------------------GELVSSNQ--------EVCGASAHSDYGMITLL 198
             + LLHYP                  G   S N         E  G   H+D+G++T+L
Sbjct: 179 ILMGLLHYPSFHHQEQEEEQEDDESNNGGKKSPNPDESKKPEVEKFGTGQHTDWGLLTVL 238

Query: 199 ATDGVPGLQA 208
             D V GLQ 
Sbjct: 239 YQDDVGGLQV 248
Involved in ethylene biosynthesis and macrocyst formation. Overexpression induces overproduction of ethylene and augmented zyg1 expression and zygote formation.
Dictyostelium mucoroides (taxid: 31287)
EC: 1EC: .EC: 1EC: 4EC: .EC: 1EC: 7EC: .EC: 4
>sp|Q76NT9|ACCO1_DICDI 1-aminocyclopropane-1-carboxylate oxidase OS=Dictyostelium discoideum GN=aco PE=2 SV=1 Back     alignment and function description
>sp|Q54RA4|Y3291_DICDI Probable iron/ascorbate oxidoreductase DDB_G0283291 OS=Dictyostelium discoideum GN=DDB_G0283291 PE=3 SV=1 Back     alignment and function description
>sp|Q7LL04|YQK1_SCHPO UPF0676 protein C1494.01 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPCC1494.01 PE=3 SV=2 Back     alignment and function description
>sp|Q7XZQ8|FNSI_PETCR Flavone synthase OS=Petroselinum crispum GN=FNSI PE=1 SV=1 Back     alignment and function description
>sp|P51091|LDOX_MALDO Leucoanthocyanidin dioxygenase OS=Malus domestica GN=ANS PE=2 SV=1 Back     alignment and function description
>sp|Q40062|IDS3_HORVU 2'-deoxymugineic-acid 2'-dioxygenase OS=Hordeum vulgare GN=IDS3 PE=1 SV=3 Back     alignment and function description
>sp|O04395|FLS_MATIN Flavonol synthase/flavanone 3-hydroxylase (Fragment) OS=Matthiola incana PE=2 SV=1 Back     alignment and function description
>sp|Q9FFQ4|FLS5_ARATH Probable flavonol synthase 5 OS=Arabidopsis thaliana GN=FLS5 PE=2 SV=1 Back     alignment and function description
>sp|Q7XZQ7|FL3H_PETCR Flavanone 3-dioxygenase OS=Petroselinum crispum GN=FHT PE=1 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query211
118486587310 unknown [Populus trichocarpa] 0.990 0.674 0.696 8e-84
224074187310 predicted protein [Populus trichocarpa] 0.990 0.674 0.691 8e-83
255581297309 Flavonol synthase/flavanone 3-hydroxylas 0.981 0.669 0.709 8e-81
357476789229 Gibberellin 2-beta-dioxygenase [Medicago 0.981 0.903 0.684 2e-78
357476787 322 Gibberellin 2-beta-dioxygenase [Medicago 0.981 0.642 0.684 4e-78
217073610230 unknown [Medicago truncatula] 0.981 0.9 0.679 1e-77
388521547 322 unknown [Medicago truncatula] 0.981 0.642 0.679 2e-77
147788882253 hypothetical protein VITISV_010938 [Viti 0.995 0.830 0.704 2e-74
357476785 321 Flavonol synthase/flavanone 3-hydroxylas 0.976 0.641 0.650 6e-73
356510660 318 PREDICTED: probable iron/ascorbate oxido 0.985 0.654 0.652 1e-71
>gi|118486587|gb|ABK95132.1| unknown [Populus trichocarpa] Back     alignment and taxonomy information
 Score =  315 bits (807), Expect = 8e-84,   Method: Compositional matrix adjust.
 Identities = 147/211 (69%), Positives = 179/211 (84%), Gaps = 2/211 (0%)

Query: 1   MTEALQLPVIDLSSPDRLSTAKSIRQACIDYGFFYLVNHGVEEELISQMFNESKKFFSLQ 60
           M E ++LP+IDLSSPDR+STAKSIRQAC+DYGFFYLVNHGVE +L+S++  ESKKFFSL 
Sbjct: 1   MAETVKLPIIDLSSPDRISTAKSIRQACVDYGFFYLVNHGVEGQLLSKVLEESKKFFSLP 60

Query: 61  LEDKMKLARKEHRGYTALCDEILDPSSTSEGDPKESFYIGPLEGTL--SSMNQWPSLEIL 118
           L +KMKL+RK HRGY+ L  E LDP S SEGD KESFY+GP+EG +  +++NQWPS EI 
Sbjct: 61  LNEKMKLSRKHHRGYSPLYAENLDPLSRSEGDSKESFYVGPVEGDMAQTNLNQWPSQEIF 120

Query: 119 PTWRSTMEYYHQKVLSAGRRLIHLIALALNLNEDFFEKVGALDAPMAFLRLLHYPGELVS 178
           P+WR TME YH+K++SAG++LI+LIA+ALNL+ED+FEKVGALD P  FLRLLHYPGEL  
Sbjct: 121 PSWRLTMESYHKKLMSAGKKLIYLIAMALNLDEDYFEKVGALDTPRGFLRLLHYPGELGC 180

Query: 179 SNQEVCGASAHSDYGMITLLATDGVPGLQAC 209
            N+++ GAS HSDYGMITLL +DGVPGLQ C
Sbjct: 181 FNEQIYGASEHSDYGMITLLVSDGVPGLQVC 211

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|224074187|ref|XP_002304292.1| predicted protein [Populus trichocarpa] gi|222841724|gb|EEE79271.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|255581297|ref|XP_002531459.1| Flavonol synthase/flavanone 3-hydroxylase, putative [Ricinus communis] gi|223528913|gb|EEF30909.1| Flavonol synthase/flavanone 3-hydroxylase, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|357476789|ref|XP_003608680.1| Gibberellin 2-beta-dioxygenase [Medicago truncatula] gi|355509735|gb|AES90877.1| Gibberellin 2-beta-dioxygenase [Medicago truncatula] Back     alignment and taxonomy information
>gi|357476787|ref|XP_003608679.1| Gibberellin 2-beta-dioxygenase [Medicago truncatula] gi|355509734|gb|AES90876.1| Gibberellin 2-beta-dioxygenase [Medicago truncatula] Back     alignment and taxonomy information
>gi|217073610|gb|ACJ85165.1| unknown [Medicago truncatula] Back     alignment and taxonomy information
>gi|388521547|gb|AFK48835.1| unknown [Medicago truncatula] Back     alignment and taxonomy information
>gi|147788882|emb|CAN71599.1| hypothetical protein VITISV_010938 [Vitis vinifera] Back     alignment and taxonomy information
>gi|357476785|ref|XP_003608678.1| Flavonol synthase/flavanone 3-hydroxylase [Medicago truncatula] gi|355509733|gb|AES90875.1| Flavonol synthase/flavanone 3-hydroxylase [Medicago truncatula] Back     alignment and taxonomy information
>gi|356510660|ref|XP_003524054.1| PREDICTED: probable iron/ascorbate oxidoreductase DDB_G0283291-like [Glycine max] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query211
TAIR|locus:2203325 329 AT1G35190 [Arabidopsis thalian 0.957 0.613 0.429 1.2e-42
TAIR|locus:504955434247 AT4G16765 [Arabidopsis thalian 0.687 0.587 0.591 8.7e-40
TAIR|locus:2075125 330 AT3G46490 [Arabidopsis thalian 0.947 0.606 0.434 9.9e-39
TAIR|locus:2078241 286 AT3G46480 [Arabidopsis thalian 0.748 0.552 0.422 1.2e-28
DICTYBASE|DDB_G0277497 368 aco "oxidoreductase" [Dictyost 0.772 0.442 0.333 1.2e-22
UNIPROTKB|G4NB73346 MGG_00611 "2OG-Fe(II) oxygenas 0.933 0.569 0.323 2.1e-22
TAIR|locus:2075130 251 AT3G46500 [Arabidopsis thalian 0.668 0.561 0.38 5.5e-22
TIGR_CMR|SPO_2669 317 SPO_2669 "oxidoreductase, 2OG- 0.952 0.634 0.311 3e-21
ASPGD|ASPL0000035942 349 AN11188 [Emericella nidulans ( 0.924 0.558 0.324 3.5e-20
UNIPROTKB|G4MWV5 352 MGG_08311 "Oxidoreductase" [Ma 0.473 0.284 0.359 7.7e-20
TAIR|locus:2203325 AT1G35190 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 451 (163.8 bits), Expect = 1.2e-42, P = 1.2e-42
 Identities = 91/212 (42%), Positives = 125/212 (58%)

Query:     7 LPVIDLSSPDRLSTAKSIRQACIDYGFFYLVNHGVEEELISQMFNESKKFFSLQLEDKMK 66
             L  IDL++ D   +  S++QAC+D GFFY++NHG+ EE +  +F +SKK F+L LE+KMK
Sbjct:    12 LNCIDLANDDLNHSVVSLKQACLDCGFFYVINHGISEEFMDDVFEQSKKLFALPLEEKMK 71

Query:    67 LARKE-HRGYTALCDEILDPSSTSEGDPKESFYIG---PLEGT-----LSSMNQWPSLEI 117
             + R E HRGYT + DE+LDP +   GD KE +YIG   P +           N WP  ++
Sbjct:    72 VLRNEKHRGYTPVLDELLDPKNQINGDHKEGYYIGIEVPKDDPHWDKPFYGPNPWPDADV 131

Query:   118 LPTWRSTMEYYHQKVLSAGXXXXXXXXXXXXXXEDFFEKVGALDAPMAFLRLLHYPGELV 177
             LP WR TME YHQ+ L                   +F++   L  P+A +RLL Y G + 
Sbjct:   132 LPGWRETMEKYHQEALRVSMAIARLLALALDLDVGYFDRTEMLGKPIATMRLLRYQG-IS 190

Query:   178 SSNQEVCGASAHSDYGMITLLATDGVPGLQAC 209
               ++ +    AHSD+GM+TLLATDGV GLQ C
Sbjct:   191 DPSKGIYACGAHSDFGMMTLLATDGVMGLQIC 222
GO:0005506 "iron ion binding" evidence=IEA
GO:0005737 "cytoplasm" evidence=ISM
GO:0009821 "alkaloid biosynthetic process" evidence=ISS
GO:0016491 "oxidoreductase activity" evidence=IEA
GO:0016706 "oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors" evidence=IEA;ISS
GO:0055114 "oxidation-reduction process" evidence=IEA
TAIR|locus:504955434 AT4G16765 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2075125 AT3G46490 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2078241 AT3G46480 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
DICTYBASE|DDB_G0277497 aco "oxidoreductase" [Dictyostelium discoideum (taxid:44689)] Back     alignment and assigned GO terms
UNIPROTKB|G4NB73 MGG_00611 "2OG-Fe(II) oxygenase" [Magnaporthe oryzae 70-15 (taxid:242507)] Back     alignment and assigned GO terms
TAIR|locus:2075130 AT3G46500 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TIGR_CMR|SPO_2669 SPO_2669 "oxidoreductase, 2OG-Fe(II) oxygenase family" [Ruegeria pomeroyi DSS-3 (taxid:246200)] Back     alignment and assigned GO terms
ASPGD|ASPL0000035942 AN11188 [Emericella nidulans (taxid:162425)] Back     alignment and assigned GO terms
UNIPROTKB|G4MWV5 MGG_08311 "Oxidoreductase" [Magnaporthe oryzae 70-15 (taxid:242507)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

Prediction LevelEC numberConfidence of Prediction
3rd Layer1.14.11LOW CONFIDENCE prediction!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query211
PLN03002 332 PLN03002, PLN03002, oxidoreductase, 2OG-Fe(II) oxy 2e-59
COG3491 322 COG3491, PcbC, Isopenicillin N synthase and relate 1e-49
PTZ00273320 PTZ00273, PTZ00273, oxidase reductase; Provisional 3e-38
pfam14226113 pfam14226, DIOX_N, non-haem dioxygenase in morphin 5e-38
PLN02485329 PLN02485, PLN02485, oxidoreductase 9e-27
PLN02393 362 PLN02393, PLN02393, leucoanthocyanidin dioxygenase 3e-23
PLN02639 337 PLN02639, PLN02639, oxidoreductase, 2OG-Fe(II) oxy 6e-23
PLN02750 345 PLN02750, PLN02750, oxidoreductase, 2OG-Fe(II) oxy 4e-21
PLN03178 360 PLN03178, PLN03178, leucoanthocyanidin dioxygenase 2e-20
PLN02704335 PLN02704, PLN02704, flavonol synthase 2e-18
PLN02758 361 PLN02758, PLN02758, oxidoreductase, 2OG-Fe(II) oxy 5e-18
PLN02984341 PLN02984, PLN02984, oxidoreductase, 2OG-Fe(II) oxy 4e-16
PLN02254 358 PLN02254, PLN02254, gibberellin 3-beta-dioxygenase 4e-15
PLN02515 358 PLN02515, PLN02515, naringenin,2-oxoglutarate 3-di 9e-15
PLN02156 335 PLN02156, PLN02156, gibberellin 2-beta-dioxygenase 1e-14
PLN02216 357 PLN02216, PLN02216, protein SRG1 2e-14
PLN02276 361 PLN02276, PLN02276, gibberellin 20-oxidase 3e-14
PLN02997325 PLN02997, PLN02997, flavonol synthase 3e-14
PLN02947374 PLN02947, PLN02947, oxidoreductase 4e-14
PLN02403 303 PLN02403, PLN02403, aminocyclopropanecarboxylate o 9e-14
PLN02912 348 PLN02912, PLN02912, oxidoreductase, 2OG-Fe(II) oxy 4e-12
PLN02299 321 PLN02299, PLN02299, 1-aminocyclopropane-1-carboxyl 4e-11
PLN02904 357 PLN02904, PLN02904, oxidoreductase 1e-09
PLN00417348 PLN00417, PLN00417, oxidoreductase, 2OG-Fe(II) oxy 4e-09
PLN03176120 PLN03176, PLN03176, flavanone-3-hydroxylase; Provi 6e-08
PLN02365 300 PLN02365, PLN02365, 2-oxoglutarate-dependent dioxy 4e-06
pfam0317196 pfam03171, 2OG-FeII_Oxy, 2OG-Fe(II) oxygenase supe 3e-05
>gnl|CDD|178579 PLN03002, PLN03002, oxidoreductase, 2OG-Fe(II) oxygenase family protein Back     alignment and domain information 
 Score =  189 bits (480), Expect = 2e-59
 Identities = 99/216 (45%), Positives = 135/216 (62%), Gaps = 18/216 (8%)

Query: 7   LPVIDLSSPDRLSTAKSIRQACIDYGFFYLVNHGVEEELISQMFNESKKFFSLQLEDKMK 66
           L  IDL++ D   +  S++QAC+D GFFY++NHG+ EE +  +F +SKKFF+L LE+KMK
Sbjct: 15  LNCIDLANDDLNHSVASLKQACLDCGFFYVINHGINEEFMDDVFEQSKKFFALPLEEKMK 74

Query: 67  LARKE-HRGYTALCDEILDPSSTSEGDPKESFYIG------------PLEGTLSSMNQWP 113
           + R E HRGYT + DE LDP +   GD KE +YIG            P  G     N WP
Sbjct: 75  VLRNEKHRGYTPVLDEKLDPKNQINGDHKEGYYIGIEVPKDDPHWDKPFYGP----NPWP 130

Query: 114 SLEILPTWRSTMEYYHQKVLSAGRRLIHLIALALNLNEDFFEKVGALDAPMAFLRLLHYP 173
             ++LP WR TME YHQ+ L     +  L+ALAL+L+  +F++   L  P+A +RLL Y 
Sbjct: 131 DADVLPGWRETMEKYHQEALRVSMAIAKLLALALDLDVGYFDRTEMLGKPIATMRLLRYQ 190

Query: 174 GELVSSNQEVCGASAHSDYGMITLLATDGVPGLQAC 209
           G +   ++ +    AHSD+GM+TLLATDGV GLQ C
Sbjct: 191 G-ISDPSKGIYACGAHSDFGMMTLLATDGVMGLQIC 225

Length = 332
>gnl|CDD|226022 COG3491, PcbC, Isopenicillin N synthase and related dioxygenases [General function prediction only] Back     alignment and domain information
>gnl|CDD|140299 PTZ00273, PTZ00273, oxidase reductase; Provisional Back     alignment and domain information
>gnl|CDD|222608 pfam14226, DIOX_N, non-haem dioxygenase in morphine synthesis N-terminal Back     alignment and domain information
>gnl|CDD|215267 PLN02485, PLN02485, oxidoreductase Back     alignment and domain information
>gnl|CDD|215220 PLN02393, PLN02393, leucoanthocyanidin dioxygenase like protein Back     alignment and domain information
>gnl|CDD|178245 PLN02639, PLN02639, oxidoreductase, 2OG-Fe(II) oxygenase family protein Back     alignment and domain information
>gnl|CDD|178351 PLN02750, PLN02750, oxidoreductase, 2OG-Fe(II) oxygenase family protein Back     alignment and domain information
>gnl|CDD|215614 PLN03178, PLN03178, leucoanthocyanidin dioxygenase; Provisional Back     alignment and domain information
>gnl|CDD|166345 PLN02704, PLN02704, flavonol synthase Back     alignment and domain information
>gnl|CDD|215404 PLN02758, PLN02758, oxidoreductase, 2OG-Fe(II) oxygenase family protein Back     alignment and domain information
>gnl|CDD|215534 PLN02984, PLN02984, oxidoreductase, 2OG-Fe(II) oxygenase family protein Back     alignment and domain information
>gnl|CDD|215142 PLN02254, PLN02254, gibberellin 3-beta-dioxygenase Back     alignment and domain information
>gnl|CDD|178130 PLN02515, PLN02515, naringenin,2-oxoglutarate 3-dioxygenase Back     alignment and domain information
>gnl|CDD|177816 PLN02156, PLN02156, gibberellin 2-beta-dioxygenase Back     alignment and domain information
>gnl|CDD|215129 PLN02216, PLN02216, protein SRG1 Back     alignment and domain information
>gnl|CDD|215156 PLN02276, PLN02276, gibberellin 20-oxidase Back     alignment and domain information
>gnl|CDD|178576 PLN02997, PLN02997, flavonol synthase Back     alignment and domain information
>gnl|CDD|215510 PLN02947, PLN02947, oxidoreductase Back     alignment and domain information
>gnl|CDD|178025 PLN02403, PLN02403, aminocyclopropanecarboxylate oxidase Back     alignment and domain information
>gnl|CDD|178500 PLN02912, PLN02912, oxidoreductase, 2OG-Fe(II) oxygenase family protein Back     alignment and domain information
>gnl|CDD|215168 PLN02299, PLN02299, 1-aminocyclopropane-1-carboxylate oxidase Back     alignment and domain information
>gnl|CDD|178492 PLN02904, PLN02904, oxidoreductase Back     alignment and domain information
>gnl|CDD|177810 PLN00417, PLN00417, oxidoreductase, 2OG-Fe(II) oxygenase family protein Back     alignment and domain information
>gnl|CDD|178720 PLN03176, PLN03176, flavanone-3-hydroxylase; Provisional Back     alignment and domain information
>gnl|CDD|177993 PLN02365, PLN02365, 2-oxoglutarate-dependent dioxygenase Back     alignment and domain information
>gnl|CDD|217403 pfam03171, 2OG-FeII_Oxy, 2OG-Fe(II) oxygenase superfamily Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 211
PLN03002 332 oxidoreductase, 2OG-Fe(II) oxygenase family protei 100.0
COG3491 322 PcbC Isopenicillin N synthase and related dioxygen 100.0
PLN02997325 flavonol synthase 100.0
PTZ00273320 oxidase reductase; Provisional 100.0
PLN02254 358 gibberellin 3-beta-dioxygenase 100.0
PLN02485329 oxidoreductase 100.0
PLN02515 358 naringenin,2-oxoglutarate 3-dioxygenase 100.0
PLN02216 357 protein SRG1 100.0
PLN02758 361 oxidoreductase, 2OG-Fe(II) oxygenase family protei 100.0
PLN02276 361 gibberellin 20-oxidase 100.0
PLN02750 345 oxidoreductase, 2OG-Fe(II) oxygenase family protei 100.0
PLN02299 321 1-aminocyclopropane-1-carboxylate oxidase 100.0
PLN02704335 flavonol synthase 100.0
PLN03178 360 leucoanthocyanidin dioxygenase; Provisional 100.0
PLN02912 348 oxidoreductase, 2OG-Fe(II) oxygenase family protei 100.0
PLN00417348 oxidoreductase, 2OG-Fe(II) oxygenase family protei 100.0
PLN02639 337 oxidoreductase, 2OG-Fe(II) oxygenase family protei 100.0
PLN02393 362 leucoanthocyanidin dioxygenase like protein 100.0
PLN02947 374 oxidoreductase 100.0
PLN02156 335 gibberellin 2-beta-dioxygenase 100.0
PLN02984341 oxidoreductase, 2OG-Fe(II) oxygenase family protei 100.0
PLN02904 357 oxidoreductase 100.0
KOG0143 322 consensus Iron/ascorbate family oxidoreductases [S 100.0
PLN02365 300 2-oxoglutarate-dependent dioxygenase 100.0
PLN02403 303 aminocyclopropanecarboxylate oxidase 100.0
PLN03001 262 oxidoreductase, 2OG-Fe(II) oxygenase family protei 100.0
PF14226116 DIOX_N: non-haem dioxygenase in morphine synthesis 99.95
PLN03176120 flavanone-3-hydroxylase; Provisional 99.84
PF0317198 2OG-FeII_Oxy: 2OG-Fe(II) oxygenase superfamily Ent 98.86
PRK08130213 putative aldolase; Validated 89.71
PRK08333184 L-fuculose phosphate aldolase; Provisional 88.78
PF07350 416 DUF1479: Protein of unknown function (DUF1479); In 87.11
PRK05874217 L-fuculose-phosphate aldolase; Validated 85.38
PRK06833214 L-fuculose phosphate aldolase; Provisional 82.41
PRK08660181 L-fuculose phosphate aldolase; Provisional 82.29
PRK08087215 L-fuculose phosphate aldolase; Provisional 82.11
PF00596184 Aldolase_II: Class II Aldolase and Adducin N-termi 82.03
>PLN03002 oxidoreductase, 2OG-Fe(II) oxygenase family protein Back     alignment and domain information 
Probab=100.00  E-value=1.9e-53  Score=352.53  Aligned_cols=206  Identities=47%  Similarity=0.855  Sum_probs=175.1

Q ss_pred             CCCCCeEeCCCcchHHHHHHHHHHHHhcCeEEEEecCCCHHHHHHHHHHHHHhhcCCHHHHhhhcccC-Ccccccccccc
Q 028254            4 ALQLPVIDLSSPDRLSTAKSIRQACIDYGFFYLVNHGVEEELISQMFNESKKFFSLQLEDKMKLARKE-HRGYTALCDEI   82 (211)
Q Consensus         4 ~~~iP~IDl~~~~~~~~~~~l~~A~~~~Gff~l~nhgi~~~~~~~~~~~~~~fF~lp~e~K~~~~~~~-~~Gy~~~~~e~   82 (211)
                      ...||+|||+..++..++++|.+||++||||||+||||+.++++++++++++||+||.|+|+++.... ++||.+.+.+.
T Consensus        12 ~~~iP~IDl~~~~~~~~~~~l~~Ac~~~GFf~l~nHGI~~~l~~~~~~~~~~FF~LP~e~K~k~~~~~~~~GY~~~~~e~   91 (332)
T PLN03002         12 VSSLNCIDLANDDLNHSVASLKQACLDCGFFYVINHGINEEFMDDVFEQSKKFFALPLEEKMKVLRNEKHRGYTPVLDEK   91 (332)
T ss_pred             CCCCCEEeCCchhHHHHHHHHHHHHHhCCEEEEeCCCCCHHHHHHHHHHHHHHHcCCHHHHHhhccCCCCCCcCcccccc
Confidence            45899999997666678999999999999999999999999999999999999999999999987655 89999887776


Q ss_pred             cCCCCCCCCCcccccccCC--CCCC------CCCCCCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChhhh
Q 028254           83 LDPSSTSEGDPKESFYIGP--LEGT------LSSMNQWPSLEILPTWRSTMEYYHQKVLSAGRRLIHLIALALNLNEDFF  154 (211)
Q Consensus        83 ~~~~~~~~~d~~E~~~~~~--~~~~------~~~~n~wP~~~~~~~f~~~~~~y~~~~~~l~~~ll~~la~~Lgl~~~~~  154 (211)
                      .+.......|++|.|+++.  +...      ..++|.||.++.+|+||+.+++|+++|.+|+..|+++||++|||++++|
T Consensus        92 ~~~~~~~~~d~kE~f~~~~~~p~~~~~~~~~~~~~n~wP~~~~~p~fr~~~~~y~~~~~~l~~~ll~~la~~Lgl~~~~f  171 (332)
T PLN03002         92 LDPKNQINGDHKEGYYIGIEVPKDDPHWDKPFYGPNPWPDADVLPGWRETMEKYHQEALRVSMAIAKLLALALDLDVGYF  171 (332)
T ss_pred             cccccCCCCcceeeeEecccCCCCCccccccccCCCCCcCCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChHHh
Confidence            5433223479999999883  2111      1257999975457899999999999999999999999999999999999


Q ss_pred             hcccccCCCcccceeccCCCCCCCCCCCccccccccccCcceeEecCCCCCceeec
Q 028254          155 EKVGALDAPMAFLRLLHYPGELVSSNQEVCGASAHSDYGMITLLATDGVPGLQACL  210 (211)
Q Consensus       155 ~~~~~~~~~~~~lr~~~Yp~~~~~~~~~~~~~~~HtD~g~lTiL~qd~~~GLQV~~  210 (211)
                      .+.+.++.+.+.||++|||+|+.. ....+|+++|||+|+||||+||+++||||++
T Consensus       172 ~~~~~~~~~~~~lrl~~YP~~~~~-~~~~~g~~~HTD~g~lTlL~qd~v~GLQV~~  226 (332)
T PLN03002        172 DRTEMLGKPIATMRLLRYQGISDP-SKGIYACGAHSDFGMMTLLATDGVMGLQICK  226 (332)
T ss_pred             ccccccCCCchheeeeeCCCCCCc-ccCccccccccCCCeEEEEeeCCCCceEEec
Confidence            853455666788999999998753 2357899999999999999999999999974

>COG3491 PcbC Isopenicillin N synthase and related dioxygenases [General function prediction only] Back     alignment and domain information
>PLN02997 flavonol synthase Back     alignment and domain information
>PTZ00273 oxidase reductase; Provisional Back     alignment and domain information
>PLN02254 gibberellin 3-beta-dioxygenase Back     alignment and domain information
>PLN02485 oxidoreductase Back     alignment and domain information
>PLN02515 naringenin,2-oxoglutarate 3-dioxygenase Back     alignment and domain information
>PLN02216 protein SRG1 Back     alignment and domain information
>PLN02758 oxidoreductase, 2OG-Fe(II) oxygenase family protein Back     alignment and domain information
>PLN02276 gibberellin 20-oxidase Back     alignment and domain information
>PLN02750 oxidoreductase, 2OG-Fe(II) oxygenase family protein Back     alignment and domain information
>PLN02299 1-aminocyclopropane-1-carboxylate oxidase Back     alignment and domain information
>PLN02704 flavonol synthase Back     alignment and domain information
>PLN03178 leucoanthocyanidin dioxygenase; Provisional Back     alignment and domain information
>PLN02912 oxidoreductase, 2OG-Fe(II) oxygenase family protein Back     alignment and domain information
>PLN00417 oxidoreductase, 2OG-Fe(II) oxygenase family protein Back     alignment and domain information
>PLN02639 oxidoreductase, 2OG-Fe(II) oxygenase family protein Back     alignment and domain information
>PLN02393 leucoanthocyanidin dioxygenase like protein Back     alignment and domain information
>PLN02947 oxidoreductase Back     alignment and domain information
>PLN02156 gibberellin 2-beta-dioxygenase Back     alignment and domain information
>PLN02984 oxidoreductase, 2OG-Fe(II) oxygenase family protein Back     alignment and domain information
>PLN02904 oxidoreductase Back     alignment and domain information
>KOG0143 consensus Iron/ascorbate family oxidoreductases [Secondary metabolites biosynthesis, transport and catabolism; General function prediction only] Back     alignment and domain information
>PLN02365 2-oxoglutarate-dependent dioxygenase Back     alignment and domain information
>PLN02403 aminocyclopropanecarboxylate oxidase Back     alignment and domain information
>PLN03001 oxidoreductase, 2OG-Fe(II) oxygenase family protein Back     alignment and domain information
>PF14226 DIOX_N: non-haem dioxygenase in morphine synthesis N-terminal; PDB: 3OOX_A 1BK0_A 1IPS_B 1QIQ_A 1OC1_A 2Y86_A 2Y60_A 1W03_A 2VE1_A 1QJF_A Back     alignment and domain information
>PLN03176 flavanone-3-hydroxylase; Provisional Back     alignment and domain information
>PF03171 2OG-FeII_Oxy: 2OG-Fe(II) oxygenase superfamily Entry for Lysyl hydrolases This Prosite entry is a sub-family of the Pfam entry; InterPro: IPR005123 This domain is found in members of the 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily [], as well as the C-terminal of prolyl 4-hydroxylase alpha subunit Back     alignment and domain information
>PRK08130 putative aldolase; Validated Back     alignment and domain information
>PRK08333 L-fuculose phosphate aldolase; Provisional Back     alignment and domain information
>PF07350 DUF1479: Protein of unknown function (DUF1479); InterPro: IPR010856 This family consists of several hypothetical Enterobacterial proteins, of around 420 residues in length Back     alignment and domain information
>PRK05874 L-fuculose-phosphate aldolase; Validated Back     alignment and domain information
>PRK06833 L-fuculose phosphate aldolase; Provisional Back     alignment and domain information
>PRK08660 L-fuculose phosphate aldolase; Provisional Back     alignment and domain information
>PRK08087 L-fuculose phosphate aldolase; Provisional Back     alignment and domain information
>PF00596 Aldolase_II: Class II Aldolase and Adducin N-terminal domain; InterPro: IPR001303 This entry represents the alpha/beta/alpha domain found in class II aldolases and adducin, usually at the N terminus Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query211
1gp5_A 356 Anthocyanidin Synthase From Arabidopsis Thaliana Co 2e-09
2brt_A 355 Anthocyanidin Synthase From Arabidopsis Thaliana Co 2e-09
1gp4_A 356 Anthocyanidin Synthase From Arabidopsis Thaliana (S 1e-08
3on7_A280 Crystal Structure Of A Putative Oxygenase (So_2589) 2e-08
1ips_A331 Isopenicillin N Synthase From Aspergillus Nidulans 3e-06
2bjs_A325 Isopenicillin N Synthase C-Terminal Truncation Muta 4e-06
3oox_A312 Crystal Structure Of A Putative 2og-Fe(Ii) Oxygenas 4e-05
1w9y_A 319 The Structure Of Acc Oxidase Length = 319 3e-04
>pdb|1GP5|A Chain A, Anthocyanidin Synthase From Arabidopsis Thaliana Complexed With Trans-Dihydroquercetin Length = 356 Back     alignment and structure 
Iteration: 1

 Score = 58.9 bits (141), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 48/210 (22%), Positives = 96/210 (45%), Gaps = 13/210 (6%)
Query: 6   QLPVIDLSSPD------RLSTAKSIRQACIDYGFFYLVNHGVEEELISQMFNESKKFFSL 59
           Q+P IDL + +      R +  + +++A +D+G  +L+NHG+  +L+ ++    ++FFSL
Sbjct: 46  QVPTIDLKNIESDDEKIRENCIEELKKASLDWGVMHLINHGIPADLMERVKKAGEEFFSL 105
Query: 60  QLEDKMKLARKEHRGYTALCDEILDPSSTSEGDPKESFYIGPLEGTLSSMNQWPSLEILP 119
            +E+K K A  +  G        L  +++ + + ++ F+          ++ WP     P
Sbjct: 106 SVEEKEKYANDQATGKIQGYGSKLANNASGQLEWEDYFFHLAYPEEKRDLSIWPK---TP 162
Query: 120 T--WRSTMEYYHQKVLSAGXXXXXXXXXXXXXXEDFFEKVGALDAPMAFLRLLHYPGELV 177
           +    +T EY     L A               +   ++VG L+  +  +++ +YP    
Sbjct: 163 SDYIEATSEYAKCLRLLATKVFKALSVGLGLEPDRLEKEVGGLEELLLQMKINYYPK--C 220
Query: 178 SSNQEVCGASAHSDYGMITLLATDGVPGLQ 207
              +   G  AH+D   +T +  + VPGLQ
Sbjct: 221 PQPELALGVEAHTDVSALTFILHNMVPGLQ 250
>pdb|2BRT|A Chain A, Anthocyanidin Synthase From Arabidopsis Thaliana Complexed With Naringenin Length = 355 Back     alignment and structure
>pdb|1GP4|A Chain A, Anthocyanidin Synthase From Arabidopsis Thaliana (Selenomethionine Substituted) Length = 356 Back     alignment and structure
>pdb|3ON7|A Chain A, Crystal Structure Of A Putative Oxygenase (So_2589) From Shewanella Oneidensis At 2.20 A Resolution Length = 280 Back     alignment and structure
>pdb|1IPS|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans (Manganese Complex) Length = 331 Back     alignment and structure
>pdb|2BJS|A Chain A, Isopenicillin N Synthase C-Terminal Truncation Mutant Length = 325 Back     alignment and structure
>pdb|3OOX|A Chain A, Crystal Structure Of A Putative 2og-Fe(Ii) Oxygenase Family Protein (Cc_0200) From Caulobacter Crescentus At 1.44 A Resolution Length = 312 Back     alignment and structure
>pdb|1W9Y|A Chain A, The Structure Of Acc Oxidase Length = 319 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query211
3oox_A312 Putative 2OG-Fe(II) oxygenase family protein; stru 5e-79
3on7_A280 Oxidoreductase, iron/ascorbate family; structural 2e-72
1odm_A331 Isopenicillin N synthase; antibiotic biosynthesis, 9e-70
1dcs_A 311 Deacetoxycephalosporin C synthase; ferrous oxygena 1e-68
1w9y_A 319 1-aminocyclopropane-1-carboxylate oxidase 1; oxyge 3e-43
1gp6_A 356 Leucoanthocyanidin dioxygenase; 2-oxoglutarate dep 6e-43
>3oox_A Putative 2OG-Fe(II) oxygenase family protein; structural genomics, joint center for structural genomics; HET: MSE; 1.44A {Caulobacter crescentus CB15} Length = 312 Back     alignment and structure
 Score =  237 bits (608), Expect = 5e-79
 Identities = 53/219 (24%), Positives = 93/219 (42%), Gaps = 19/219 (8%)

Query: 1   MTEALQLPVIDLS--SPDRLSTAKSIRQACIDYGFFYLVNHGVEEELISQMFNESKKFFS 58
           M+ +  +  +  S  + D    A+ +  +   YGF  L ++ +++  I    + +K FF+
Sbjct: 2   MSTS-AIDPVSFSLYAKDFTRFAQELGASFERYGFAVLSDYDLDQARIDAAVDSAKAFFA 60

Query: 59  LQLEDKMKLARKE--HRGYTALCDEILDPSSTSEGDPKESFYIGP------LEGTLSSMN 110
           L +E K + A  +   RGY     E    +     D KE +++G             + N
Sbjct: 61  LPVETKKQYAGVKGGARGYIPFGVETAKGADH--YDLKEFWHMGRDLPPGHRFRAHMADN 118

Query: 111 QWPSLEILPTWRSTMEYYHQKVLSAGRRLIHLIALALNLNEDFFEKVGALDAPMAFLRLL 170
            WP    +P ++  + + +  +   G +++  IA  L L  DFF+    +    + LRLL
Sbjct: 119 VWP--AEIPAFKHDVSWLYNSLDGMGGKVLEAIATYLKLERDFFKP--TVQDGNSVLRLL 174

Query: 171 HYPGELVSSNQEVCGASAHSDYGMITLLATDGVPGLQAC 209
           HYP   +  +     A AH D   ITLL      GL+  
Sbjct: 175 HYPP--IPKDATGVRAGAHGDINTITLLLGAEEGGLEVL 211
>3on7_A Oxidoreductase, iron/ascorbate family; structural genomics, joint center for structural genomics, J protein structure initiative; 2.20A {Shewanella oneidensis} Length = 280 Back     alignment and structure
>1odm_A Isopenicillin N synthase; antibiotic biosynthesis, B-lactam antibiotic, oxygenase, penicillin biosynthesis, oxidoreductase, iron; HET: ASV; 1.15A {Emericella nidulans} SCOP: b.82.2.1 PDB: 1blz_A* 1hb1_A* 1hb2_A* 1hb3_A* 1hb4_A* 1ips_A 1obn_A* 1oc1_A* 1bk0_A* 1odn_A* 1qiq_A* 1qje_A* 1qjf_A* 1uzw_A* 1w03_A* 1w04_A* 1w05_A* 1w06_A* 1w3v_A* 1w3x_A* ... Length = 331 Back     alignment and structure
>1dcs_A Deacetoxycephalosporin C synthase; ferrous oxygenase, 2-oxoglutarate, oxidoreduc antibiotics, merohedral twinning; 1.30A {Streptomyces clavuligerus} SCOP: b.82.2.1 PDB: 1rxf_A 1rxg_A* 1unb_A* 1uo9_A 1uob_A* 1uof_A* 1uog_A* 2jb8_A 1w28_A 1w2a_X 1w2n_A* 1w2o_A* 1hjg_A 1hjf_A 1e5h_A 1e5i_A* Length = 311 Back     alignment and structure
>1w9y_A 1-aminocyclopropane-1-carboxylate oxidase 1; oxygenase, 2OG oxygenase, ACCO, ACC oxidase; 2.1A {Petunia hybrida} SCOP: b.82.2.1 PDB: 1wa6_X Length = 319 Back     alignment and structure
>1gp6_A Leucoanthocyanidin dioxygenase; 2-oxoglutarate dependent dioxygenase, flavonoid biosynthesis; HET: MES QUE DH2; 1.75A {Arabidopsis thaliana} SCOP: b.82.2.1 PDB: 1gp5_A* 1gp4_A* 2brt_A* Length = 356 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query211
3oox_A312 Putative 2OG-Fe(II) oxygenase family protein; stru 100.0
1gp6_A 356 Leucoanthocyanidin dioxygenase; 2-oxoglutarate dep 100.0
1w9y_A 319 1-aminocyclopropane-1-carboxylate oxidase 1; oxyge 100.0
1odm_A331 Isopenicillin N synthase; antibiotic biosynthesis, 100.0
1dcs_A 311 Deacetoxycephalosporin C synthase; ferrous oxygena 100.0
3on7_A280 Oxidoreductase, iron/ascorbate family; structural 100.0
2opi_A212 L-fuculose-1-phosphate aldolase; L-fuculose-1-phos 83.2
>3oox_A Putative 2OG-Fe(II) oxygenase family protein; structural genomics, joint center for structural genomics; HET: MSE; 1.44A {Caulobacter crescentus CB15} Back     alignment and structure
Probab=100.00  E-value=5.2e-53  Score=347.09  Aligned_cols=200  Identities=27%  Similarity=0.386  Sum_probs=170.5

Q ss_pred             CCCCCCCCeEeCCCc--chHHHHHHHHHHHHhcCeEEEEecCCCHHHHHHHHHHHHHhhcCCHHHHhhhccc-C-Ccccc
Q 028254            1 MTEALQLPVIDLSSP--DRLSTAKSIRQACIDYGFFYLVNHGVEEELISQMFNESKKFFSLQLEDKMKLARK-E-HRGYT   76 (211)
Q Consensus         1 m~~~~~iP~IDl~~~--~~~~~~~~l~~A~~~~Gff~l~nhgi~~~~~~~~~~~~~~fF~lp~e~K~~~~~~-~-~~Gy~   76 (211)
                      |+ +.+||||||+..  ++.+++++|.+||++||||||+||||+.++++++++.+++||+||.|+|+++... . ++||.
T Consensus         2 m~-~~~iPvIDls~~~~~~~~~~~~l~~A~~~~GFf~v~nHGi~~~~~~~~~~~~~~fF~lP~e~K~~~~~~~~~~~Gy~   80 (312)
T 3oox_A            2 MS-TSAIDPVSFSLYAKDFTRFAQELGASFERYGFAVLSDYDLDQARIDAAVDSAKAFFALPVETKKQYAGVKGGARGYI   80 (312)
T ss_dssp             ---CCSSCCEETHHHHHCHHHHHHHHHHHHHHHSEEEEESCCSCHHHHHHHHHHHHHHHTSCHHHHGGGBSSGGGTSEEE
T ss_pred             CC-CCCCCeEEChHhcccHHHHHHHHHHHHHhCcEEEEECCCCCHHHHHHHHHHHHHHHCCCHHHHhhhccCCCCccccc
Confidence            55 678999999854  4567799999999999999999999999999999999999999999999999763 3 89999


Q ss_pred             cccccccCCCCCCCCCcccccccCCCCC--C----CCCCCCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHcCCC
Q 028254           77 ALCDEILDPSSTSEGDPKESFYIGPLEG--T----LSSMNQWPSLEILPTWRSTMEYYHQKVLSAGRRLIHLIALALNLN  150 (211)
Q Consensus        77 ~~~~e~~~~~~~~~~d~~E~~~~~~~~~--~----~~~~n~wP~~~~~~~f~~~~~~y~~~~~~l~~~ll~~la~~Lgl~  150 (211)
                      +.+.+....  ....|++|+|+++.+..  .    ...+|.||+  .+|+||+++++|+++|.+|+.+|+++|+++||++
T Consensus        81 ~~g~e~~~~--~~~~D~kE~~~~~~~~~~~~~~~~~~~~n~wP~--~~p~fr~~~~~y~~~~~~l~~~ll~~la~~Lgl~  156 (312)
T 3oox_A           81 PFGVETAKG--ADHYDLKEFWHMGRDLPPGHRFRAHMADNVWPA--EIPAFKHDVSWLYNSLDGMGGKVLEAIATYLKLE  156 (312)
T ss_dssp             CCCCCCSTT--SCSCCCCEEEEECCCCCTTCGGGGTSCCCCCCT--TSTTHHHHHHHHHHHHHHHHHHHHHHHHHHTTSC
T ss_pred             cccceecCC--CCCCCceeeeEeecCCCcCCcchhccCCCCCCC--cCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcC
Confidence            888776532  23689999999974221  1    125789997  5899999999999999999999999999999999


Q ss_pred             hhhhhcccccCCCcccceeccCCCCCCCCCCCccccccccccCcceeEecCCCCCceee
Q 028254          151 EDFFEKVGALDAPMAFLRLLHYPGELVSSNQEVCGASAHSDYGMITLLATDGVPGLQAC  209 (211)
Q Consensus       151 ~~~~~~~~~~~~~~~~lr~~~Yp~~~~~~~~~~~~~~~HtD~g~lTiL~qd~~~GLQV~  209 (211)
                      +++|.+  .+..+.+.+|++|||||+.. +. .+|+++|||+|+||||+||+++||||+
T Consensus       157 ~~~f~~--~~~~~~~~lr~~~Ypp~~~~-~~-~~g~~~HtD~g~lTlL~qd~v~GLqV~  211 (312)
T 3oox_A          157 RDFFKP--TVQDGNSVLRLLHYPPIPKD-AT-GVRAGAHGDINTITLLLGAEEGGLEVL  211 (312)
T ss_dssp             TTTTHH--HHTTCCCEEEEEEECCCSSC-CC---CEEEECCCSSEEEEECCTTSCEEEE
T ss_pred             HHHHHH--HhcCCcceeeeEecCCCCCC-cC-CcCccceecCceEEEEeEcCcCceEEE
Confidence            999986  55667789999999999864 23 399999999999999999999999996
>1gp6_A Leucoanthocyanidin dioxygenase; 2-oxoglutarate dependent dioxygenase, flavonoid biosynthesis; HET: MES QUE DH2; 1.75A {Arabidopsis thaliana} SCOP: b.82.2.1 PDB: 1gp5_A* 1gp4_A* 2brt_A* Back     alignment and structure
>1w9y_A 1-aminocyclopropane-1-carboxylate oxidase 1; oxygenase, 2OG oxygenase, ACCO, ACC oxidase; 2.1A {Petunia hybrida} SCOP: b.82.2.1 PDB: 1wa6_X Back     alignment and structure
>1odm_A Isopenicillin N synthase; antibiotic biosynthesis, B-lactam antibiotic, oxygenase, penicillin biosynthesis, oxidoreductase, iron; HET: ASV; 1.15A {Emericella nidulans} SCOP: b.82.2.1 PDB: 1blz_A* 1hb1_A* 1hb2_A* 1hb3_A* 1hb4_A* 1ips_A 1obn_A* 1oc1_A* 1bk0_A* 1odn_A* 1qiq_A* 1qje_A* 1qjf_A* 1uzw_A* 1w03_A* 1w04_A* 1w05_A* 1w06_A* 1w3v_A* 1w3x_A* ... Back     alignment and structure
>1dcs_A Deacetoxycephalosporin C synthase; ferrous oxygenase, 2-oxoglutarate, oxidoreduc antibiotics, merohedral twinning; 1.30A {Streptomyces clavuligerus} SCOP: b.82.2.1 PDB: 1rxf_A 1rxg_A* 1unb_A* 1uo9_A 1uob_A* 1uof_A* 1uog_A* 2jb8_A 1w28_A 1w2a_X 1w2n_A* 1w2o_A* 1hjg_A 1hjf_A 1e5h_A 1e5i_A* Back     alignment and structure
>3on7_A Oxidoreductase, iron/ascorbate family; structural genomics, joint center for structural genomics, J protein structure initiative; 2.20A {Shewanella oneidensis} Back     alignment and structure
>2opi_A L-fuculose-1-phosphate aldolase; L-fuculose-1-phosphate aldolas structural genomics, PSI-2, protein structure initiative; 2.50A {Bacteroides thetaiotaomicron} Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 211
d1w9ya1 307 b.82.2.1 (A:2-308) 1-aminocyclopropane-1-carboxyla 2e-32
d1dcsa_ 311 b.82.2.1 (A:) Deacetoxycephalosporin C synthase {S 1e-31
d1gp6a_349 b.82.2.1 (A:) Anthocyanidin synthase {Mouse-ear cr 4e-31
d1odma_329 b.82.2.1 (A:) Isopenicillin N synthase {Emericella 4e-24
>d1w9ya1 b.82.2.1 (A:2-308) 1-aminocyclopropane-1-carboxylate oxidase 1 {Petunia hybrida [TaxId: 4102]} Length = 307 Back     information, alignment and structure

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: Clavaminate synthase-like
family: Penicillin synthase-like
domain: 1-aminocyclopropane-1-carboxylate oxidase 1
species: Petunia hybrida [TaxId: 4102]

 Score =  116 bits (292), Expect = 2e-32
 Identities = 45/205 (21%), Positives = 89/205 (43%), Gaps = 17/205 (8%)

Query: 7   LPVIDLS---SPDRLSTAKSIRQACIDYGFFYLVNHGVEEELISQMFNESKKFFSLQLED 63
            P+I L      +R +T + I+ AC ++GFF LVNHG+  E++  +   +K  +   +E 
Sbjct: 3   FPIISLDKVNGVERAATMEMIKDACENWGFFELVNHGIPREVMDTVEKMTKGHYKKCMEQ 62

Query: 64  KMKLARKEHRGYTALCDEILDPSSTSEGDPKESFYIGPLEGTLSSMNQWPSLEILPTWRS 123
           + K      +    +  E+ D       D + +F++  L   +S++++ P  ++   +R 
Sbjct: 63  RFKELVAS-KALEGVQAEVTDM------DWESTFFLKHL--PISNISEVP--DLDEEYRE 111

Query: 124 TMEYYHQKVLSAGRRLIHLIALALNLNEDFFEK-VGALDAPMAFLRLLHYPGELVSSNQE 182
            M  + +++      L+ L+   L L + + +        P    ++ +YP         
Sbjct: 112 VMRDFAKRLEKLAEELLDLLCENLGLEKGYLKNAFYGSKGPNFGTKVSNYPP--CPKPDL 169

Query: 183 VCGASAHSDYGMITLLATDGVPGLQ 207
           + G  AH+D G I LL  D      
Sbjct: 170 IKGLRAHTDAGGIILLFQDDKVSGL 194
>d1dcsa_ b.82.2.1 (A:) Deacetoxycephalosporin C synthase {Streptomyces clavuligerus [TaxId: 1901]} Length = 311 Back     information, alignment and structure
>d1gp6a_ b.82.2.1 (A:) Anthocyanidin synthase {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 349 Back     information, alignment and structure
>d1odma_ b.82.2.1 (A:) Isopenicillin N synthase {Emericella nidulans [TaxId: 162425]} Length = 329 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query211
d1gp6a_349 Anthocyanidin synthase {Mouse-ear cress (Arabidops 100.0
d1dcsa_ 311 Deacetoxycephalosporin C synthase {Streptomyces cl 100.0
d1w9ya1 307 1-aminocyclopropane-1-carboxylate oxidase 1 {Petun 100.0
d1odma_329 Isopenicillin N synthase {Emericella nidulans [Tax 100.0
d1vm6a3128 Dihydrodipicolinate reductase {Thermotoga maritima 82.6
d1pvta_232 Putative sugar-phosphate aldolase {Thermotoga mari 80.01
>d1gp6a_ b.82.2.1 (A:) Anthocyanidin synthase {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]} Back     information, alignment and structure
class: All beta proteins
fold: Double-stranded beta-helix
superfamily: Clavaminate synthase-like
family: Penicillin synthase-like
domain: Anthocyanidin synthase
species: Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=100.00  E-value=6.1e-46  Score=307.71  Aligned_cols=198  Identities=24%  Similarity=0.421  Sum_probs=157.0

Q ss_pred             CCCCCeEeCCCcc------hHHHHHHHHHHHHhcCeEEEEecCCCHHHHHHHHHHHHHhhcCCHHHHhhhcccC----Cc
Q 028254            4 ALQLPVIDLSSPD------RLSTAKSIRQACIDYGFFYLVNHGVEEELISQMFNESKKFFSLQLEDKMKLARKE----HR   73 (211)
Q Consensus         4 ~~~iP~IDl~~~~------~~~~~~~l~~A~~~~Gff~l~nhgi~~~~~~~~~~~~~~fF~lp~e~K~~~~~~~----~~   73 (211)
                      ..+||||||+...      +++++++|++||+++|||||+||||+.++++++++++++||+||.|+|+++....    +.
T Consensus        43 ~~~IPvIDls~l~~~d~~~r~~~~~~l~~A~~~~GFf~l~nHGI~~~li~~~~~~~~~FF~lP~eeK~k~~~~~~~~~~~  122 (349)
T d1gp6a_          43 GPQVPTIDLKNIESDDEKIRENCIEELKKASLDWGVMHLINHGIPADLMERVKKAGEEFFSLSVEEKEKYANDQATGKIQ  122 (349)
T ss_dssp             SCCCCEEECTTTTCSCHHHHHHHHHHHHHHHHHTSEEEEESCSCCHHHHHHHHHHHHHHHTSCHHHHGGGBCBGGGTBCS
T ss_pred             CCCcCeEEChhcCCCCHHHHHHHHHHHHHHHHhCCEEEEEccCCCHHHHHHHHHHHHHHHcCCHHHHhhhhcccccCCcc
Confidence            4589999998531      3567899999999999999999999999999999999999999999999997644    23


Q ss_pred             ccccccccccCCCCCCCCCcccccccC-CCCCCCCCCCCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChh
Q 028254           74 GYTALCDEILDPSSTSEGDPKESFYIG-PLEGTLSSMNQWPSLEILPTWRSTMEYYHQKVLSAGRRLIHLIALALNLNED  152 (211)
Q Consensus        74 Gy~~~~~e~~~~~~~~~~d~~E~~~~~-~~~~~~~~~n~wP~~~~~~~f~~~~~~y~~~~~~l~~~ll~~la~~Lgl~~~  152 (211)
                      ||.....+.    .....++.+.+... .+. ....+|.||.  ..+.|++.+++|++.|.+++.+|+++++.+||++++
T Consensus       123 ~~g~~~~~~----~~~~~~~~~~~~~~~~~~-~~~~~n~wp~--~~~~f~e~~~~~~~~~~~la~~ll~~la~~Lgl~~~  195 (349)
T d1gp6a_         123 GYGSKLANN----ASGQLEWEDYFFHLAYPE-EKRDLSIWPK--TPSDYIEATSEYAKCLRLLATKVFKALSVGLGLEPD  195 (349)
T ss_dssp             EEECCCCCS----TTCCCCSCEEEEEEEESG-GGCCGGGSCC--SSTTHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCTT
T ss_pred             ccccccccc----cccccchhhhhccccccc-cccccccccc--ccchHHHHHHHHHHHHHHHHHhhhHHHHHHcCCCHH
Confidence            333222111    12234444443322 121 1126789998  678999999999999999999999999999999999


Q ss_pred             hhhcccc-cCCCcccceeccCCCCCCCCCCCccccccccccCcceeEecCCCCCceeec
Q 028254          153 FFEKVGA-LDAPMAFLRLLHYPGELVSSNQEVCGASAHSDYGMITLLATDGVPGLQACL  210 (211)
Q Consensus       153 ~~~~~~~-~~~~~~~lr~~~Yp~~~~~~~~~~~~~~~HtD~g~lTiL~qd~~~GLQV~~  210 (211)
                      +|.+... .+.+.+.+|++|||+++.  +...+|+++|||+|+||||+||.++||||++
T Consensus       196 ~~~~~~~~~~~~~~~lrl~~Yp~~~~--~~~~~g~~~HtD~g~lTlL~q~~~~GLqv~~  252 (349)
T d1gp6a_         196 RLEKEVGGLEELLLQMKINYYPKCPQ--PELALGVEAHTDVSALTFILHNMVPGLQLFY  252 (349)
T ss_dssp             HHHHHTTHHHHCEEEEEEEEECCCSS--TTTCCSEEEECCCSSEEEEEECSCCCEEEEE
T ss_pred             HHHHHhccccccceeeeecccccccc--hhhccccccCCCCcceEEEeccCCcceeeec
Confidence            9886211 134567899999999876  4567899999999999999999999999975
>d1dcsa_ b.82.2.1 (A:) Deacetoxycephalosporin C synthase {Streptomyces clavuligerus [TaxId: 1901]} Back     information, alignment and structure
>d1w9ya1 b.82.2.1 (A:2-308) 1-aminocyclopropane-1-carboxylate oxidase 1 {Petunia hybrida [TaxId: 4102]} Back     information, alignment and structure
>d1odma_ b.82.2.1 (A:) Isopenicillin N synthase {Emericella nidulans [TaxId: 162425]} Back     information, alignment and structure
>d1vm6a3 c.2.1.3 (A:1-96,A:183-214) Dihydrodipicolinate reductase {Thermotoga maritima [TaxId: 2336]} Back     information, alignment and structure
>d1pvta_ c.74.1.1 (A:) Putative sugar-phosphate aldolase {Thermotoga maritima [TaxId: 2336]} Back     information, alignment and structure