Citrus Sinensis ID: 028259

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-
Protein Sequence
MSNNKMKGLLKGLRYISHIFENEKEPEMQIGFPTDVKHVAHIGWDGPSVNSPSWMNEFKASELGGDIKDDASIKSEDSSSRRSARDPELPKSSRRHASTGSSADPERSEKSRSRRSKQSNKDLSESTRSKGASEGGGTDIPKKSRRKKSKDSADGSSRSSRTSRRGQSSKSDTASECGSVSKSNNINNECSQTSGVNHSEGGEVKEHTGIS
Secondary Structure (PSIPRED)
ccHHHHHHHHHHHHHHHHHHcccccccccccccccccccEEEccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
cccHHHHHHHHHHHHHHHHHHHccccccEEcccccccEEEEEcccccccccccHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEcccccc
Coil and Loop (DISEMBL)
MSNNKMKGLLKGLRYISHIfenekepemqigfptdvkhvahigwdgpsvnspswmnefkaselggdikddasiksedsssrrsardpelpkssrrhastgssadperseksrsrrskqsnkdlsestrskgasegggtdipkksrrkkskdsadgssrssrtsrrgqssksdtasecgsvsksnninnecsqtsgvnhseggevkehtgis
Flexible Loop (DISEMBL)
msnnkmkgllKGLRYISHIFENEKEPEMQIGFPTDVKHVAHIGWDGPSVNSPSWMNEFKASElggdikddasiksedsssrrsardpelpkssrrhastgssadperseksrsrrskqsnkdlsestrskgasegggtdipkksrrkkskdsadgssrssrtsrrgqssksdtasecgsvsksnninnecsqtsgvnhseggevkehtgis
Low Complexity Region (SEG)
MSNNKMKGLLKGLRYISHIFENEKEPEMQIGFPTDVKHVAHIGWDGPSVNSPSWMNEFKASELGGdikddasiksedsssrrsardPELPKSSRRHASTGSSADPerseksrsrrskQSNKDLSESTRSKGASEGGGTDIPkksrrkkskdsadgssrssrtsrrgqssksDTASECGSVSKSNNINNECSQTSGVNHSEGGEVKEHTGIS
Disordered region (IsUnstruct)
********LLKGLRYISHIFENEK*PEMQIGFPTDVKHVAHIGWDGP********************************************************************************************************************************************************************
Disordered Region (DISOPRED)
*********LKGLRYISHIFENEKEPEMQIGFPTDVKHVAHIGWDGPSVNSPSWMNEF*********************************************************************************************************************************************************
Disordered Region (DISEMBL)
MSNNKMKGLLKGLRYISHIFENEKEPEMQIGFPTDVKHVAHIGWDGPSVNSPSWMNEFKASELGGDIKDDA**************************************************************************************************************KSNNINNECSQTSGVN**************
Disordered Region (DISPRO)
**NNKMKGLLKGLRYISHIFENEKEPEMQIGFPTDVKHVAHIGWDGPSVN*****************************************************************************************************************************************************************
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MSNNKMKGLLKGLRYISHIFENEKEPEMQIGFPTDVKHVAHIGWDGPSVNSPSWMNEFKASELGGDIKDDASIKSEDSSSRRSARDPELPKSSRRHASTGSSADPERSEKSRSRRSKQSNKDLSESTRSKGASEGGGTDIPKKSRRKKSKDSADGSSRSSRTSRRGQSSKSDTASECGSVSKSNNINNECSQTSGVNHSEGGEVKEHTGIS
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

No hits with e-value below 0.001 by BLAST

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	211
449479986	157	PREDICTED: uncharacterized protein LOC10	0.488	0.656	0.729	1e-35
255577930	260	conserved hypothetical protein [Ricinus	0.886	0.719	0.471	9e-29
356548077	194	PREDICTED: uncharacterized protein LOC10	0.739	0.804	0.467	3e-28
449445810	219	PREDICTED: uncharacterized protein LOC10	0.402	0.388	0.670	3e-28
255637745	194	unknown [Glycine max]	0.739	0.804	0.451	8e-28
79325345	216	PAK-box/P21-Rho-binding family protein [	0.601	0.587	0.543	2e-27
33320064	222	desiccation-associated protein [Lilium l	0.682	0.648	0.474	3e-27
297803218	216	hypothetical protein ARALYDRAFT_491908 [	0.672	0.657	0.506	6e-27
449487425	211	PREDICTED: uncharacterized protein LOC10	0.350	0.350	0.690	7e-26
296083680	82	unnamed protein product [Vitis vinifera]	0.274	0.707	0.896	1e-25

>gi|449479986|ref|XP_004155768.1| PREDICTED: uncharacterized protein LOC101225594 [Cucumis sativus]

 Score =  155 bits (392), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 81/111 (72%), Positives = 89/111 (80%), Gaps = 8/111 (7%)

Query: 1   MSNNKMKGLLKGLRYISHIFENEKEPEMQIGFPTDVKHVAHIGWDGPSVNSPSWMNEFKA 60
           MSNNKMKGLLKGLRYIS IF+NEKEPEMQIGFPTDVKHVAHIGWDGPSVNSPSWMNEFK 
Sbjct: 1   MSNNKMKGLLKGLRYISQIFDNEKEPEMQIGFPTDVKHVAHIGWDGPSVNSPSWMNEFKH 60

Query: 61  SELGGDIKDDASIKSEDSSSRR----SARD-PELPKSSRRHAST--GSSAD 104
               GDIK DAS +     S+R    ++RD PELPKSS+R +ST  GS A+
Sbjct: 61  PN-NGDIKQDASAQCVSQDSKRDMAVTSRDMPELPKSSKRQSSTVGGSVAE 110

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255577930|ref|XP_002529837.1| conserved hypothetical protein [Ricinus communis] gi|223530665|gb|EEF32538.1| conserved hypothetical protein [Ricinus communis]

 Score =  132 bits (332), Expect = 9e-29,   Method: Compositional matrix adjust.
 Identities = 107/227 (47%), Positives = 144/227 (63%), Gaps = 40/227 (17%)

Query: 19  IFENEKEPEMQIGFPTDVKHVAHIGWDGPSVNSPSWMNEFKASELG---------GDIKD 69
           + +NEKEPEMQIG+PTDVKHVAHIGWDGPSV SPSWMNEFKA   G         G+ K+
Sbjct: 40  VADNEKEPEMQIGYPTDVKHVAHIGWDGPSVTSPSWMNEFKAPAGGFSSAPLNSNGEPKE 99

Query: 70  DASIK--SEDSSSRRSA------RD-PELPKSSRRHAST----GSSADPERSEKSRSRR- 115
           D SI   SEDSSSRR +      RD PELPK+SR+ +ST    G S   E+++K +  R 
Sbjct: 100 DNSITWVSEDSSSRRGSRSRGIDRDLPELPKASRKPSSTERLDGESPTREKTDKPKQSRK 159

Query: 116 -SKQSNKDLSE--STR-SKGASEGGGT-----DIPKKSRRKKSKDSADGSSRSSRTSRRG 166
            S+ + KDL++  STR SK  S+   +     DIPKK+RRKKSKD ++  S++SR   + 
Sbjct: 160 SSRNATKDLADGKSTRHSKDQSQASDSLSNLPDIPKKTRRKKSKDGSN--SKASRA--KA 215

Query: 167 QSSKSDTASECGSVSKSNNINNECSQTSGVNHSEGGEVKEH--TGIS 211
           Q+  +D  S+ GS+  SN++N E  +T+  + +   E  E+  +GIS
Sbjct: 216 QALDADCGSDSGSI--SNSLNGELCETASSSFNTFDEDAENGFSGIS 260

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356548077|ref|XP_003542430.1| PREDICTED: uncharacterized protein LOC100790434 [Glycine max]

 Score =  130 bits (328), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 92/197 (46%), Positives = 116/197 (58%), Gaps = 41/197 (20%)

Query: 1   MSNNKMKGLLKGLRYISHIFENEKEPEMQIGFPTDVKHVAHIGWDGPSVNSPSWMNEFKA 60
           MS NK+KG+L   RYIS +FE EKE ++QIGFPTDV+HV HIGWDGPSVN PSWM++FK 
Sbjct: 1   MSGNKVKGIL---RYISQLFETEKEQDIQIGFPTDVEHVTHIGWDGPSVNYPSWMSQFKT 57

Query: 61  ----SELGGDI----KDDASIKSEDSSSRRSARD-PELPKSSRRHASTGSSADPERSEKS 111
               S    D+    +D+A   SED S RRS RD P+LPK+S+R           +S K 
Sbjct: 58  APGFSSAPLDVQNKGQDNAKWVSED-SRRRSTRDLPDLPKASKR-----------KSNKP 105

Query: 112 RSRRSKQSNKDLSESTRSKGASEGGG---------TDIPKKSRRKKSKDSADGSSRSSRT 162
           R  R K SNK   EST ++                +DIPKKSRR+K+K+++ G S   R 
Sbjct: 106 RQSR-KSSNKPKEESTLTRIPIPVSTDHLLPTLPVSDIPKKSRRQKTKENSSGGSSKLR- 163

Query: 163 SRRGQSSKSDTASECGS 179
                 SK+  ASE GS
Sbjct: 164 ------SKAQPASESGS 174

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449445810|ref|XP_004140665.1| PREDICTED: uncharacterized protein LOC101208553 [Cucumis sativus]

 Score =  130 bits (327), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 65/97 (67%), Positives = 73/97 (75%), Gaps = 12/97 (12%)

Query: 1  MSNNKMKGLLKGLRYISHIFENEKEPEMQIGFPTDVKHVAHIGWDGPSVNSPSWMNEFKA 60
          MSN+++KGLLKGLRYIS IF+NEKE EM+IG PTDVKHVAHIGWDGPSVNSPSWMNEFKA
Sbjct: 1  MSNSRVKGLLKGLRYISQIFDNEKEAEMKIGHPTDVKHVAHIGWDGPSVNSPSWMNEFKA 60

Query: 61 S----------ELGGDIKDDASIK--SEDSSSRRSAR 85
                        GD K+D S+K  SED  SRR A+
Sbjct: 61 PPSFSSAPLSLHASGDNKEDVSVKWVSEDRPSRRVAK 97

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255637745|gb|ACU19195.1| unknown [Glycine max]

 Score =  129 bits (324), Expect = 8e-28,   Method: Compositional matrix adjust.
 Identities = 89/197 (45%), Positives = 116/197 (58%), Gaps = 41/197 (20%)

Query: 1   MSNNKMKGLLKGLRYISHIFENEKEPEMQIGFPTDVKHVAHIGWDGPSVNSPSWMNEFKA 60
           MS NK+KG+L   RYIS +FE EKE ++QIGFPTDV+HV HIGWDGPSVN PSWM++FK 
Sbjct: 1   MSGNKVKGIL---RYISQLFETEKEQDIQIGFPTDVEHVTHIGWDGPSVNYPSWMSQFKT 57

Query: 61  S--------ELGGDIKDDASIKSEDSSSRRSARD-PELPKSSRRHASTGSSADPERSEKS 111
           +        ++    +D+A   SED S RRS RD P+LPK+ +R           +S K 
Sbjct: 58  APGFSSAPLDVQNKGQDNAKWVSED-SRRRSTRDLPDLPKAFKR-----------KSNKP 105

Query: 112 RSRRSKQSNKDLSESTRSKGASEGGG---------TDIPKKSRRKKSKDSADGSSRSSRT 162
           R  R K SNK   EST ++                +DIPKKSRR+K+K+++ G S   R 
Sbjct: 106 RQSR-KSSNKPKEESTLTRIPIPVSTDHLLPTLPVSDIPKKSRRQKTKENSSGGSSKLR- 163

Query: 163 SRRGQSSKSDTASECGS 179
                 SK+ +ASE GS
Sbjct: 164 ------SKAQSASESGS 174

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|79325345|ref|NP_001031740.1| PAK-box/P21-Rho-binding family protein [Arabidopsis thaliana] gi|98961817|gb|ABF59238.1| unknown protein [Arabidopsis thaliana] gi|332660105|gb|AEE85505.1| PAK-box/P21-Rho-binding family protein [Arabidopsis thaliana]

 Score =  127 bits (320), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 75/138 (54%), Positives = 94/138 (68%), Gaps = 11/138 (7%)

Query: 1   MSNNKMKGLLKGLRYISHIF--ENEKEPEMQIGFPTDVKHVAHIGWDGPSVN--SPSWMN 56
           MS+ KMK LLKGLRYIS +F  E EKE EMQIG PTDVKHVAHIGWDGPS N  +PSWMN
Sbjct: 5   MSSTKMKSLLKGLRYISQVFAIEGEKEEEMQIGNPTDVKHVAHIGWDGPSDNATAPSWMN 64

Query: 57  EFKASELGGDIK----DDASIKSEDSSSRRSARDPELPKSSRRHASTGSSADPERSEKSR 112
           +FK+S +   I+    DD+S+K +     R+   P+LPKS+R+ +S   S   ERS+K++
Sbjct: 65  DFKSSPVMESIQGLGEDDSSVKCQSEFGGRTRDLPKLPKSTRKSSSEKGSPTKERSDKTK 124

Query: 113 SRRSKQSNKDLSESTRSK 130
            R    SNK  S S R+K
Sbjct: 125 RR---TSNKGTSSSRRTK 139

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|33320064|gb|AAQ05795.1|AF477624_1 desiccation-associated protein [Lilium longiflorum] gi|86278339|gb|ABC88422.1| LLP12-2 [Lilium longiflorum]

 Score =  127 bits (319), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 84/177 (47%), Positives = 103/177 (58%), Gaps = 33/177 (18%)

Query: 5   KMKGLLKGLRYISHIFENE-KEPEMQIGFPTDVKHVAHIGWDGPSV-NSPSWMNEFKASE 62
           KMKGLLKGLRYIS IFE E KEPEM+IGFPTDVKHVAHIGWDGPSV N+PSWM E+K++ 
Sbjct: 4   KMKGLLKGLRYISQIFEGEDKEPEMEIGFPTDVKHVAHIGWDGPSVNNAPSWMTEYKSAP 63

Query: 63  LGG------------------------DIKDDASIKSEDSSSRRSARDPELPKSSRRHAS 98
           LG                           K   S + + SSS +  RDP  P  SRR  S
Sbjct: 64  LGATNGGEGTEVEPPKFPSAEFQPTGEPPKPKQSRQKDSSSSDQPVRDPSKP--SRRRPS 121

Query: 99  TGS-SADPERSEKS----RSRRSKQSNKDLSESTRSKGASEGGGTDIPKKSRRKKSK 150
           +GS + D +  E S    R RRSK +N        S  +++   + IPK+SRR+K+K
Sbjct: 122 SGSVNVDIQPRETSEGSRRGRRSKSNNTGGGGGPDSPTSTQQDSSGIPKQSRRRKTK 178

Source: Lilium longiflorum

Species: Lilium longiflorum

Genus: Lilium

Family: Liliaceae

Order: Liliales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297803218|ref|XP_002869493.1| hypothetical protein ARALYDRAFT_491908 [Arabidopsis lyrata subsp. lyrata] gi|297315329|gb|EFH45752.1| hypothetical protein ARALYDRAFT_491908 [Arabidopsis lyrata subsp. lyrata]

 Score =  126 bits (316), Expect = 6e-27,   Method: Compositional matrix adjust.
 Identities = 83/164 (50%), Positives = 105/164 (64%), Gaps = 22/164 (13%)

Query: 1   MSNNKMKGLLKGLRYISHIF--ENEKEPEMQIGFPTDVKHVAHIGWDGPSVN--SPSWMN 56
           MS+ KMK LLKGLRYIS +F  E+EKE EMQIG PTDVKHVAHIGWDGPS N  +PSWMN
Sbjct: 5   MSSTKMKSLLKGLRYISQVFAIESEKEQEMQIGNPTDVKHVAHIGWDGPSDNATAPSWMN 64

Query: 57  EFKAS-------ELGGDIKDDASIKSEDSSSRRSARDPELPKSSRRHASTGSSADPERSE 109
           +FK+S       +L G+  DD+S+K +     RS   P+LPKS+R+ +S   S   E+S+
Sbjct: 65  DFKSSPGMESTTQLFGE--DDSSVKCQSEFGGRSRDLPKLPKSTRKSSSEKGSPTKEKSD 122

Query: 110 KSRSRRSKQSNKDLSESTRSKGASEGGGTDIPKKSRRKKSKDSA 153
           K++ R    SNK  S S R+K        D    SRR K +DS+
Sbjct: 123 KTKRR---TSNKGTSSSRRTKDE------DSTSSSRRTKDEDSS 157

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449487425|ref|XP_004157620.1| PREDICTED: uncharacterized protein LOC101230481 [Cucumis sativus]

 Score =  122 bits (307), Expect = 7e-26,   Method: Compositional matrix adjust.
 Identities = 58/84 (69%), Positives = 65/84 (77%), Gaps = 10/84 (11%)

Query: 1  MSNNKMKGLLKGLRYISHIFENEKEPEMQIGFPTDVKHVAHIGWDGPSVNSPSWMNEFKA 60
          MSN+++KGLLKGLRYIS IF+NEKE EM+IG PTDVKHVAHIGWDGPSVNSPSWMNEFKA
Sbjct: 1  MSNSRVKGLLKGLRYISQIFDNEKEAEMKIGHPTDVKHVAHIGWDGPSVNSPSWMNEFKA 60

Query: 61 S----------ELGGDIKDDASIK 74
                        GD K+D S+K
Sbjct: 61 PPSFSSAPLSLHASGDNKEDVSVK 84

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|296083680|emb|CBI23669.3| unnamed protein product [Vitis vinifera]

 Score =  122 bits (305), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 52/58 (89%), Positives = 56/58 (96%)

Query: 4  NKMKGLLKGLRYISHIFENEKEPEMQIGFPTDVKHVAHIGWDGPSVNSPSWMNEFKAS 61
           K+KGLLKGLRYIS IFENEKEPEMQIGFPTDVKHVAHIGWDGPSV+SPSWMNEFK++
Sbjct: 3  TKVKGLLKGLRYISQIFENEKEPEMQIGFPTDVKHVAHIGWDGPSVSSPSWMNEFKST 60

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

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Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	211
TAIR|locus:2054820	212	RIC6 "ROP-interactive CRIB mot	0.625	0.622	0.468	4.2e-24
TAIR|locus:1009023333	216	RIC7 "AT4G28556" [Arabidopsis	0.601	0.587	0.478	1.8e-23
TAIR|locus:2090880	193	RIC5 "AT3G23380" [Arabidopsis	0.606	0.663	0.417	2.9e-23
TAIR|locus:2051033	224	RIC1 "AT2G33460" [Arabidopsis	0.270	0.254	0.771	2.3e-22
TAIR|locus:2018369	220	RIC3 "ROP-interactive CRIB mot	0.270	0.259	0.719	2e-21
TAIR|locus:2135373	156	RIC10 "AT4G04900" [Arabidopsis	0.279	0.378	0.639	6.4e-19
TAIR|locus:1009023072	177	AT1G03982 "AT1G03982" [Arabido	0.559	0.666	0.403	1.3e-15
TAIR|locus:4010713574	128	AT1G61795 "AT1G61795" [Arabido	0.270	0.445	0.551	7.9e-14
TAIR|locus:4010713898	156	AT4G21745 "AT4G21745" [Arabido	0.246	0.333	0.517	2e-10
TAIR|locus:2016009	111	RIC2 "AT1G27380" [Arabidopsis	0.251	0.477	0.389	2.6e-06

TAIR|locus:2054820 RIC6 "ROP-interactive CRIB motif-containing protein 6" [Arabidopsis thaliana (taxid:3702)]

 Score = 276 (102.2 bits), Expect = 4.2e-24, P = 4.2e-24
 Identities = 66/141 (46%), Positives = 77/141 (54%)

Query:     1 MSNNKMKGLLKGLRYISHIFENEKEPEMQIGFPTDVKHVAHIGWDGPSVNS--PSWMNEF 58
             MS++KMK LLKGLRYIS +FE+EKE E+QIG PTDVKHVAHIGWDGPS N+  PSWM EF
Sbjct:     5 MSSSKMKSLLKGLRYISQVFESEKEEEIQIGNPTDVKHVAHIGWDGPSANATAPSWMTEF 64

Query:    59 KAS----ELGGXXXXXXXXXXXXXXXXXXXXXPELPKSSRRHASTGSSADPXXXXXXXXX 114
              +        G                     P LPKS+R+ AS   S  P         
Sbjct:    65 NSGGGFESAEGVGEDDSSIKCMSEYGGRSRDLPNLPKSTRKAASEKGS--PTKDKSSDKT 122

Query:   115 XXXQSNKDLSESTRS-KGASE 134
                 SNK  S S+R  K A+E
Sbjct:   123 KRRSSNKGTSSSSRRPKEATE 143

GO:0005634 "nucleus" evidence=ISM

GO:0009860 "pollen tube growth" evidence=RCA;IMP

GO:0016324 "apical plasma membrane" evidence=IDA

GO:0009827 "plant-type cell wall modification" evidence=RCA

TAIR|locus:1009023333 RIC7 "AT4G28556" [Arabidopsis thaliana (taxid:3702)]

 Score = 270 (100.1 bits), Expect = 1.8e-23, P = 1.8e-23
 Identities = 66/138 (47%), Positives = 77/138 (55%)

Query:     1 MSNNKMKGLLKGLRYISHIF--ENEKEPEMQIGFPTDVKHVAHIGWDGPSVNS--PSWMN 56
             MS+ KMK LLKGLRYIS +F  E EKE EMQIG PTDVKHVAHIGWDGPS N+  PSWMN
Sbjct:     5 MSSTKMKSLLKGLRYISQVFAIEGEKEEEMQIGNPTDVKHVAHIGWDGPSDNATAPSWMN 64

Query:    57 EFKAS----ELGGXXXXXXXXXXXXXXXXXXXXXPELPKSSRRHASTGSSADPXXXXXXX 112
             +FK+S     + G                     P+LPKS+R+ +S   S  P       
Sbjct:    65 DFKSSPVMESIQGLGEDDSSVKCQSEFGGRTRDLPKLPKSTRKSSSEKGS--PTKERSDK 122

Query:   113 XXXXXQSNKDLSESTRSK 130
                   SNK  S S R+K
Sbjct:   123 TKRRT-SNKGTSSSRRTK 139

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM;IDA

GO:0005886 "plasma membrane" evidence=IDA

GO:0009416 "response to light stimulus" evidence=IDA

TAIR|locus:2090880 RIC5 "AT3G23380" [Arabidopsis thaliana (taxid:3702)]

 Score = 268 (99.4 bits), Expect = 2.9e-23, P = 2.9e-23
 Identities = 58/139 (41%), Positives = 76/139 (54%)

Query:     6 MKGLLKGLRYISHIFENEKEPEMQIGFPTDVKHVAHIGWDGPSVNSPSWMNEFKASELGG 65
             MKGLLKGLRYI+ IFE+EKEPEMQIG PTDVKHVAHIGW+GPS  +PSWM++FK ++   
Sbjct:     5 MKGLLKGLRYIARIFEDEKEPEMQIGIPTDVKHVAHIGWEGPSATTPSWMHDFKPTD--- 61

Query:    66 XXXXXXXXXXXXXXXXXXXXXPELPKSSRRHASTGSSA---DPXXXXXXXXXXXXQSNKD 122
                                   E  +  RR  STG+++    P             + K 
Sbjct:    62 ----QTKTETKGTSNKKPGSSGEKHRKGRRKTSTGNNSPTESPSRVGGSVRPSKRNTGKQ 117

Query:   123 LSESTRSKGASEGGGTDIP 141
               ++T S G+  G G ++P
Sbjct:   118 REQNTGS-GSESGSGLELP 135

GO:0005515 "protein binding" evidence=IPI

GO:0009860 "pollen tube growth" evidence=IMP

GO:0016324 "apical plasma membrane" evidence=IDA

TAIR|locus:2051033 RIC1 "AT2G33460" [Arabidopsis thaliana (taxid:3702)]

 Score = 240 (89.5 bits), Expect = 2.3e-22, Sum P(2) = 2.3e-22
 Identities = 44/57 (77%), Positives = 49/57 (85%)

Query:     6 MKGLLKGLRYISHIFENEKEPEMQIGFPTDVKHVAHIGWDGPSVNSPSWMNEFKASE 62
             MKGLLKGLRYI+ IF+ EKE EMQIGFPTDVKHVAHIG DGP+  +PSWMN+FK  E
Sbjct:     5 MKGLLKGLRYITQIFDEEKEQEMQIGFPTDVKHVAHIGSDGPTNTTPSWMNDFKTQE 61

GO:0005515 "protein binding" evidence=IPI

GO:0009860 "pollen tube growth" evidence=RCA;IMP

GO:0016324 "apical plasma membrane" evidence=IDA

GO:0000902 "cell morphogenesis" evidence=IMP

GO:0010005 "cortical microtubule, transverse to long axis" evidence=IDA

GO:0010215 "cellulose microfibril organization" evidence=IMP

GO:0031122 "cytoplasmic microtubule organization" evidence=IMP

GO:0000226 "microtubule cytoskeleton organization" evidence=RCA

GO:0009827 "plant-type cell wall modification" evidence=RCA

TAIR|locus:2018369 RIC3 "ROP-interactive CRIB motif-containing protein 3" [Arabidopsis thaliana (taxid:3702)]

 Score = 229 (85.7 bits), Expect = 2.0e-21, Sum P(2) = 2.0e-21
 Identities = 41/57 (71%), Positives = 48/57 (84%)

Query:     6 MKGLLKGLRYISHIFENEKEPEMQIGFPTDVKHVAHIGWDGPSVNSPSWMNEFKASE 62
             +KGLLKGLRYI+ IF+ EK+ +MQIGFPTDVKHVAHIG DGP+ N PSWM +FK  E
Sbjct:     4 VKGLLKGLRYITQIFDEEKDKDMQIGFPTDVKHVAHIGSDGPATNVPSWMGDFKPQE 60

GO:0005634 "nucleus" evidence=ISM

GO:0005737 "cytoplasm" evidence=IDA

GO:0009860 "pollen tube growth" evidence=IMP

GO:0005515 "protein binding" evidence=IPI

GO:0007204 "elevation of cytosolic calcium ion concentration" evidence=IMP

GO:0030834 "regulation of actin filament depolymerization" evidence=IMP

GO:0050848 "regulation of calcium-mediated signaling" evidence=IMP

GO:0050850 "positive regulation of calcium-mediated signaling" evidence=IMP

GO:0017157 "regulation of exocytosis" evidence=IDA

GO:0051650 "establishment of vesicle localization" evidence=IDA

TAIR|locus:2135373 RIC10 "AT4G04900" [Arabidopsis thaliana (taxid:3702)]

 Score = 199 (75.1 bits), Expect = 6.4e-19, Sum P(2) = 6.4e-19
 Identities = 39/61 (63%), Positives = 48/61 (78%)

Query:     5 KMKGLLKGLRYISHIFENEKE-PEMQIGFPTDVKHVAHIGWDGPSVNSPSWMNEFKA-SE 62
             KMKG+ KG + IS IF  EKE  E++IGFPTDVKHVAHIGW+G S ++P WM+EFK  +E
Sbjct:     4 KMKGIYKGFKCISQIFAVEKERDEIEIGFPTDVKHVAHIGWEGSSGSAPGWMSEFKVGAE 63

Query:    63 L 63
             L
Sbjct:    64 L 64

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0005737 "cytoplasm" evidence=IDA

GO:0009860 "pollen tube growth" evidence=IMP

TAIR|locus:1009023072 AT1G03982 "AT1G03982" [Arabidopsis thaliana (taxid:3702)]

 Score = 196 (74.1 bits), Expect = 1.3e-15, P = 1.3e-15
 Identities = 52/129 (40%), Positives = 57/129 (44%)

Query:    18 HIFENEKEPEMQIGFPTDVKHVAHIGWDGPSVNS--PSWMNEFKASELGGXXXXXXXXXX 75
             H  ENEKE EMQIG PTDVKHVAHIGWDG SVN   PSWM +FK   LGG          
Sbjct:     5 HNAENEKEAEMQIGTPTDVKHVAHIGWDGGSVNHNPPSWMKDFKV--LGGYSPALIGNIK 62

Query:    76 XXXX-----XXXXXXXPELPKSSRRHASTGSSADPXXXXXXXXXXXXQSNKDLSE--STR 128
                             P LPKSSR  +ST   +                N  +S   S  
Sbjct:    63 EDASCIFEDSTRSRDIPRLPKSSRERSSTLGGSPTKERSRRRGSSQYNGNPKVSRRSSKE 122

Query:   129 SKGASEGGG 137
             S    + GG
Sbjct:   123 SSAIPQDGG 131

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:4010713574 AT1G61795 "AT1G61795" [Arabidopsis thaliana (taxid:3702)]

 Score = 179 (68.1 bits), Expect = 7.9e-14, P = 7.9e-14
 Identities = 32/58 (55%), Positives = 44/58 (75%)

Query:     5 KMKGLL-KGLRYISHIFENEKEPEMQIGFPTDVKHVAHIGWDGPSVNSPSWMNEFKAS 61
             + KGL  K  +  S IF+ E+E EM+IG+PTDV+HV+HIGWD  S ++PSW++EFK S
Sbjct:     4 RFKGLYNKSFKCFSDIFDVEEEEEMEIGYPTDVRHVSHIGWDSSSSSAPSWLHEFKTS 61

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:4010713898 AT4G21745 "AT4G21745" [Arabidopsis thaliana (taxid:3702)]

 Score = 147 (56.8 bits), Expect = 2.0e-10, P = 2.0e-10
 Identities = 29/56 (51%), Positives = 39/56 (69%)

Query:     5 KMKGLLKGLRYISHIFENEKEPEMQIGFPTDVKHVAHIGWDGPSVNSPSWMNEFKA 60
             KMKG+ K  + I  +    KE +++IG PT+VKHVAHIGW G S + P WM++FKA
Sbjct:     4 KMKGIYKSFKSIMFV---GKERDLEIGHPTEVKHVAHIGW-GSSGSDPGWMSDFKA 55

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2016009 RIC2 "AT1G27380" [Arabidopsis thaliana (taxid:3702)]

 Score = 108 (43.1 bits), Expect = 2.6e-06, P = 2.6e-06
 Identities = 23/59 (38%), Positives = 33/59 (55%)

Query:     9 LLKGLRYISHIF------ENEKEPEMQIGFPTDVKHVAHIGWDGPSVNSPSWMNEFKAS 61
             +++  +  SH F        E+E EM+IGFPTDVKH++HIG DG      +  + F  S
Sbjct:    44 IIRSFKSFSHFFIRYEEETKEREAEMEIGFPTDVKHLSHIGVDGTMTTFDNTSSSFPFS 102


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.304   0.124   0.357    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      211       148   0.00068  104 3  11 23  0.49    32
                                                     30  0.39    34


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  10
  No. of states in DFA:  571 (61 KB)
  Total size of DFA:  144 KB (2088 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  12.47u 0.15s 12.62t   Elapsed:  00:00:01
  Total cpu time:  12.47u 0.15s 12.62t   Elapsed:  00:00:01
  Start:  Fri May 10 10:22:56 2013   End:  Fri May 10 10:22:57 2013

GO:0003674 "molecular_function" evidence=ND

GO:0005739 "mitochondrion" evidence=ISM

GO:0005886 "plasma membrane" evidence=IDA

GO:0009860 "pollen tube growth" evidence=IMP

GO:0010413 "glucuronoxylan metabolic process" evidence=RCA

GO:0045492 "xylan biosynthetic process" evidence=RCA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	211
pfam00786	59	pfam00786, PBD, P21-Rho-binding domain	4e-08
smart00285	36	smart00285, PBD, P21-Rho-binding domain	1e-06
cd00132	42	cd00132, CRIB, PAK (p21 activated kinase) Binding	3e-05
PHA03307	1352	PHA03307, PHA03307, transcriptional regulator ICP4	2e-04
PHA03307	1352	PHA03307, PHA03307, transcriptional regulator ICP4	0.004

>gnl|CDD|144398 pfam00786, PBD, P21-Rho-binding domain

 Score = 48.2 bits (115), Expect = 4e-08
 Identities = 13/39 (33%), Positives = 20/39 (51%), Gaps = 4/39 (10%)

Query: 29 QIGFPTDVKHVAHIGWDGPSVNS----PSWMNEFKASEL 63
          +I  PT+ KHV H+G+DG +       P W     +S +
Sbjct: 1  EISTPTNFKHVVHVGFDGQTGFFTGLPPEWEKLLPSSGI 39

Small domains that bind Cdc42p- and/or Rho-like small GTPases. Also known as the Cdc42/Rac interactive binding (CRIB). Length = 59

>gnl|CDD|197628 smart00285, PBD, P21-Rho-binding domain

 Score = 43.3 bits (103), Expect = 1e-06
 Identities = 13/36 (36%), Positives = 19/36 (52%), Gaps = 4/36 (11%)

Query: 30 IGFPTDVKHVAHIGWDGPSVN----SPSWMNEFKAS 61
          I  PT+ KH+AH+G+DG +         W +  K S
Sbjct: 1  ISTPTNFKHIAHVGFDGQTGGFTGLPTEWKSLLKTS 36

Small domains that bind Cdc42p- and/or Rho-like small GTPases. Also known as the Cdc42/Rac interactive binding (CRIB). Length = 36

>gnl|CDD|238077 cd00132, CRIB, PAK (p21 activated kinase) Binding Domain (PBD), binds Cdc42p- and/or Rho-like small GTPases; also known as the Cdc42/Rac interactive binding (CRIB) motif; has been shown to inhibit transcriptional activation and cell transformation mediated by the Ras-Rac pathway

 Score = 39.7 bits (93), Expect = 3e-05
 Identities = 15/39 (38%), Positives = 22/39 (56%), Gaps = 4/39 (10%)

Query: 28 MQIGFPTDVKHVAHIGWDGP---SVNSP-SWMNEFKASE 62
          M+I  PTD KH++H+GWDG      N P    + F+ + 
Sbjct: 1  MEISTPTDFKHISHVGWDGVGFDGANLPPDLQSLFQTAG 39

CRIB-containing effector proteins are functionally diverse and include serine/threonine kinases, tyrosine kinases, actin-binding proteins, and adapter molecules. Length = 42

>gnl|CDD|223039 PHA03307, PHA03307, transcriptional regulator ICP4; Provisional

 Score = 41.7 bits (98), Expect = 2e-04
 Identities = 26/137 (18%), Positives = 41/137 (29%), Gaps = 18/137 (13%)

Query: 45  DGPSVNSPSWMNEFKASELGGDIKDDASIKSEDSSSRRSARDPELPKSSRRHASTGSSAD 104
            GP+ +SP       AS      ++ +S  +  SS            S  R  S      
Sbjct: 305 SGPAPSSPR------ASSSSSSSRESSSSSTSSSSESSRGAAVSPGPSPSRSPSPSRPPP 358

Query: 105 PERSEKSRSRRSKQSNKDLSESTRSKGASEGGGTDIPKKSRRKKSKDSADGSSRSSRTSR 164
           P     S  R+  + ++  S    S G             RR+     A  + R   T R
Sbjct: 359 PADP--SSPRKRPRPSRAPSSPAASAGRPT----------RRRARAAVAGRARRRDATGR 406

Query: 165 RGQSSKSDTASECGSVS 181
                   +  + G+ S
Sbjct: 407 FPAGRPRPSPLDAGAAS 423

Length = 1352

>gnl|CDD|223039 PHA03307, PHA03307, transcriptional regulator ICP4; Provisional

 Score = 37.5 bits (87), Expect = 0.004
 Identities = 19/101 (18%), Positives = 32/101 (31%), Gaps = 6/101 (5%)

Query: 75  SEDSSSRRSARDPELPKSSRRHASTGSSADPERSEKSRSRRSKQSNKDLSESTRSKGASE 134
              SSS    R P     S     +G +    R+  S S          S ++ S  +S 
Sbjct: 284 PASSSSSPRERSPS---PSPSSPGSGPAPSSPRASSSSSS---SRESSSSSTSSSSESSR 337

Query: 135 GGGTDIPKKSRRKKSKDSADGSSRSSRTSRRGQSSKSDTAS 175
           G          R  S       +  S   +R + S++ ++ 
Sbjct: 338 GAAVSPGPSPSRSPSPSRPPPPADPSSPRKRPRPSRAPSSP 378

Length = 1352

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	211
cd00132	42	CRIB PAK (p21 activated kinase) Binding Domain (PB	99.14
PF00786	59	PBD: P21-Rho-binding domain; InterPro: IPR000095 T	98.97
smart00285	36	PBD P21-Rho-binding domain. Small domains that bin	98.71
cd01093	46	CRIB_PAK_like PAK (p21 activated kinase) Binding D	98.68
KOG0578	550	consensus p21-activated serine/threonine protein k	87.04
KOG3671	569	consensus Actin regulatory protein (Wiskott-Aldric	83.07

>cd00132 CRIB PAK (p21 activated kinase) Binding Domain (PBD), binds Cdc42p- and/or Rho-like small GTPases; also known as the Cdc42/Rac interactive binding (CRIB) motif; has been shown to inhibit transcriptional activation and cell transformation mediated by the Ras-Rac pathway

Probab=99.14  E-value=2e-11  Score=81.31  Aligned_cols=36  Identities=42%  Similarity=0.870  Sum_probs=30.0

Q ss_pred             eeecCCCccccceeeccCCC--CC-C-CchhhhhhhcCCC
Q 028259           28 MQIGFPTDVKHVAHIGWDGP--SV-N-SPSWMNEFKASEL   63 (211)
Q Consensus        28 meIG~PTDVkHVaHIGwDg~--s~-n-~PsWm~~fk~~~~   63 (211)
                      |+||.||||+||+|||||+.  .. + +|.|+.+|+.+.+
T Consensus         1 ~~IS~Ptnf~H~~HvG~d~~g~~~~~~p~~w~~l~~~~~i   40 (42)
T cd00132           1 MEISTPTDFKHISHVGWDGVGFDGANLPPDLQSLFQTAGI   40 (42)
T ss_pred             CcccCCCCcCcccccCCCCCCccccCCCHHHHHHHHHccC
Confidence            78999999999999999974  22 3 5599999998654

CRIB-containing effector proteins are functionally diverse and include serine/threonine kinases, tyrosine kinases, actin-binding proteins, and adapter molecules.

>PF00786 PBD: P21-Rho-binding domain; InterPro: IPR000095 The molecular bases of the versatile functions of Rho-like GTPases are still unknown

Probab=98.97  E-value=1.4e-10  Score=81.39  Aligned_cols=36  Identities=42%  Similarity=0.784  Sum_probs=27.4

Q ss_pred             eecCCCccccceeeccCCCCC----CCchhhhhhhcCCCC
Q 028259           29 QIGFPTDVKHVAHIGWDGPSV----NSPSWMNEFKASELG   64 (211)
Q Consensus        29 eIG~PTDVkHVaHIGwDg~s~----n~PsWm~~fk~~~~~   64 (211)
                      +||.|||||||+|||||+.++    -+|.|++.|+.+++.
T Consensus         1 ~Is~P~nf~H~~HVg~d~~~g~~~glp~ew~~~l~~~~it   40 (59)
T PF00786_consen    1 DISNPTNFKHVAHVGWDPNTGGFTGLPPEWEKLLKSSGIT   40 (59)
T ss_dssp             TB---EEEEEEEEEEEETTTTEEES--HHHHHHHHSCTTS
T ss_pred             CCCCCCCCcceeeeccCCCccccccCCHHHHhhccccCCC
Confidence            699999999999999999775    389999999998543

Small domains that bind Cdc42p- and/or Rho-like small GTPases. Also known as the Cdc42/Rac interactive binding (CRIB). The Cdc42/Rac interactive binding (CRIB) region has been shown to inhibit transcriptional activation and cell transformation mediated by the Ras-Rac pathway []. In fission yeast pak1+ encodes a protein kinase that interacts with Cdc42p and is involved in the control of cell polarity and mating [].; GO: 0005515 protein binding; PDB: 2OV2_O 1EES_B 2ODB_B 1E0A_B 2QME_I 1F3M_B 3PCS_H 1T84_A 2K42_A 1EJ5_A ....

>smart00285 PBD P21-Rho-binding domain

Probab=98.71  E-value=7.7e-09  Score=67.16  Aligned_cols=31  Identities=42%  Similarity=0.798  Sum_probs=26.1

Q ss_pred             ecCCCccccceeeccCCCCC----CCchhhhhhhc
Q 028259           30 IGFPTDVKHVAHIGWDGPSV----NSPSWMNEFKA   60 (211)
Q Consensus        30 IG~PTDVkHVaHIGwDg~s~----n~PsWm~~fk~   60 (211)
                      |+.||||+|++|+|||+...    -+|.|...|+.
T Consensus         1 IS~P~nf~H~~HVg~d~~~~~f~glp~ew~~~l~~   35 (36)
T smart00285        1 ISTPTDFKHIAHVGFDGQTGEFTGLPTEWESLLKT   35 (36)
T ss_pred             CCCCCCCcEEEEeeECCCCCccCCCCHHHHHHhcc
Confidence            89999999999999998332    38999988764

Small domains that bind Cdc42p- and/or Rho-like small GTPases. Also known as the Cdc42/Rac interactive binding (CRIB).

>cd01093 CRIB_PAK_like PAK (p21 activated kinase) Binding Domain (PBD), binds Cdc42p- and/or Rho-like small GTPases; also known as the Cdc42/Rac interactive binding (CRIB) motif; has been shown to inhibit transcriptional activation and cell transformation mediated by the Ras-Rac pathway

Probab=98.68  E-value=1.1e-08  Score=69.38  Aligned_cols=36  Identities=31%  Similarity=0.562  Sum_probs=30.6

Q ss_pred             eecCCCccccceeeccCCCCC----CCchhhhhhhcCCCC
Q 028259           29 QIGFPTDVKHVAHIGWDGPSV----NSPSWMNEFKASELG   64 (211)
Q Consensus        29 eIG~PTDVkHVaHIGwDg~s~----n~PsWm~~fk~~~~~   64 (211)
                      +|+.||||+|+.|||||...+    -+|.|.+.|+.+++.
T Consensus         2 ~IS~P~n~~H~~Hv~~d~~~g~f~glP~eW~~ll~~sgis   41 (46)
T cd01093           2 EISSPTNFKHRVHVGFDPQTGEFTGLPEEWQRLLKSSGIT   41 (46)
T ss_pred             ccCCCCCceeeeEeeECCCCCcccCCCHHHHHHHHHcCCC
Confidence            699999999999999998544    289999999986643

This subgroup of CRIB/PBD-domains is found N-terminal of Serine/Threonine kinase domains in PAK and PAK-like proteins.

>KOG0578 consensus p21-activated serine/threonine protein kinase [Signal transduction mechanisms]

Probab=87.04  E-value=0.38  Score=47.64  Aligned_cols=40  Identities=23%  Similarity=0.508  Sum_probs=34.3

Q ss_pred             ceeecCCCccccceeeccCCCCCC----CchhhhhhhcCCCCCC
Q 028259           27 EMQIGFPTDVKHVAHIGWDGPSVN----SPSWMNEFKASELGGD   66 (211)
Q Consensus        27 emeIG~PTDVkHVaHIGwDg~s~n----~PsWm~~fk~~~~~~s   66 (211)
                      --+|+.|++++|..|.|.|.-.++    +..|-..++...+...
T Consensus        25 ~s~iS~P~nf~h~vHvGfd~~tg~ftGlP~~W~~Ll~~s~it~~   68 (550)
T KOG0578|consen   25 KSEISSPSNFEHRVHVGFDPVTGEFTGLPKQWQRLLQSSEITKR   68 (550)
T ss_pred             CCccCCCCCccceeecccCCCcccccCCcHHHHHHhcchhhccc
Confidence            489999999999999999988774    7799999988776533

>KOG3671 consensus Actin regulatory protein (Wiskott-Aldrich syndrome protein) [Signal transduction mechanisms; Cytoskeleton]

Probab=83.07  E-value=0.73  Score=45.77  Aligned_cols=38  Identities=32%  Similarity=0.668  Sum_probs=28.5

Q ss_pred             ceeecCCCccccceeeccCCCCC---------CCchhhhhhhcCCCC
Q 028259           27 EMQIGFPTDVKHVAHIGWDGPSV---------NSPSWMNEFKASELG   64 (211)
Q Consensus        27 emeIG~PTDVkHVaHIGwDg~s~---------n~PsWm~~fk~~~~~   64 (211)
                      --.|+.||.++|++|+|||--.+         +.|.--+.|..+++.
T Consensus       233 k~disaPtnf~h~~hVgwd~~~gf~~~~~p~~~dp~~nn~~s~agis  279 (569)
T KOG3671|consen  233 KADISAPTNFPHIPHVGWDEQVGFDSAPAPNNNDPPLNNLFSSAGIS  279 (569)
T ss_pred             cccCCCCCCCccccccCCCcCCCcccCCCCCCCChhhhcccccCCCC
Confidence            36899999999999999997654         245556667666654

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	211
1cee_B	59	Wiskott-aldrich syndrome protein WAsp; CDC42 actin	99.19
2qme_I	36	CRIB domain of the serine/threonine-protein kinas;	98.93
1f3m_A	80	Serine/threonine-protein kinase PAK-alpha; kinase	98.87
2odb_B	35	Serine/threonine-protein kinase PAK 6; small GTPas	98.64
2ov2_I	35	Serine/threonine-protein kinase PAK 4; GTPase RAC3	98.62
2lnh_A	65	N-WAsp, neural wiskott-aldrich syndrome protein; p	97.98
1ej5_A	107	WAsp, wiskott-aldrich syndrome protein; alpha heli	97.52
4fie_A	423	Serine/threonine-protein kinase PAK 4; kinase doma	95.11

>1cee_B Wiskott-aldrich syndrome protein WAsp; CDC42 actin regulator GTPase and the GTPase binding domain of ITS effector WAsp; HET: GCP; NMR {Homo sapiens}

Probab=99.19  E-value=7.6e-12  Score=87.61  Aligned_cols=41  Identities=29%  Similarity=0.580  Sum_probs=35.0

Q ss_pred             CCceeecCCCccccceeeccCCCCC-----CCchhhhhhhcCCCCC
Q 028259           25 EPEMQIGFPTDVKHVAHIGWDGPSV-----NSPSWMNEFKASELGG   65 (211)
Q Consensus        25 E~emeIG~PTDVkHVaHIGwDg~s~-----n~PsWm~~fk~~~~~~   65 (211)
                      -..|+|+.||||+||+|||||..++     -+|.|+..|+.+++..
T Consensus         4 ~~k~~Is~Ptnf~Hv~HvG~d~~~gf~~~g~pp~W~~ll~~sGIt~   49 (59)
T 1cee_B            4 ISKADIGAPSGFKHVSHVGWDPQNGFDVNNLDPDLRSLFSRAGISE   49 (59)
T ss_dssp             CCTTTSCCCCCCEEEEEECCCTTTCCCCSSCCHHHHHHHTTTTSCS
T ss_pred             CCCCcccCCCCCCCcceeccCCCCCcccCCCCHHHHHHHHHcCCCH
Confidence            3468999999999999999998664     3899999999977653

>2qme_I CRIB domain of the serine/threonine-protein kinas; GTPase RAC3, small GTP binding protein, P21 RAC, RAS-related botulinum toxin substrate 3; HET: GCP; 1.75A {Homo sapiens}

Probab=98.93  E-value=1.6e-10  Score=74.22  Aligned_cols=31  Identities=26%  Similarity=0.693  Sum_probs=19.7

Q ss_pred             eecCCCccccceeeccCCCCC--C--Cchhhhhhh
Q 028259           29 QIGFPTDVKHVAHIGWDGPSV--N--SPSWMNEFK   59 (211)
Q Consensus        29 eIG~PTDVkHVaHIGwDg~s~--n--~PsWm~~fk   59 (211)
                      +||.||||+||+|||||..++  +  +|.|.+.|+
T Consensus         1 ~Is~Ptnf~H~~Hvg~d~~tG~~~glp~~W~~ll~   35 (36)
T 2qme_I            1 EISLPSDFEHTIHVGFDAVTGEFTGMPEQWARLLQ   35 (36)
T ss_dssp             CBCCCEEEEEEEEECCBTTTTBCC-----------
T ss_pred             CCcCCCCCCCeeEcccCCCCCcccCCCHHHHHHHh
Confidence            699999999999999998766  2  889998875

>1f3m_A Serine/threonine-protein kinase PAK-alpha; kinase domain, autoinhibitory fragment, homodimer, transferase; 2.30A {Homo sapiens} SCOP: j.66.1.1 PDB: 1e0a_B* 1ees_B

Probab=98.87  E-value=5e-10  Score=82.75  Aligned_cols=38  Identities=24%  Similarity=0.572  Sum_probs=28.2

Q ss_pred             ceeecCCCccccceeeccCCCCC----CCchhhhhhhcCCCC
Q 028259           27 EMQIGFPTDVKHVAHIGWDGPSV----NSPSWMNEFKASELG   64 (211)
Q Consensus        27 emeIG~PTDVkHVaHIGwDg~s~----n~PsWm~~fk~~~~~   64 (211)
                      +|+||.||||+||+|||||..++    -+|.|...|..+++.
T Consensus         3 ~~~Is~Ptnf~H~~HVg~D~~tG~~~GlP~eW~~ll~~sGIs   44 (80)
T 1f3m_A            3 RPEISLPSDFEHTIHVGFDAVTGEFTGMPEQWARLLQTSNIT   44 (80)
T ss_dssp             ------CCSSEEEEEEEEETTTTEEESCCHHHHHHHHTSCCC
T ss_pred             CCccCCCCCCCCeeecccCCCCCccCCCCHHHHHHHHHcCCC
Confidence            68999999999999999998776    389999999977654

>2odb_B Serine/threonine-protein kinase PAK 6; small GTPase, CRIB, protein-protein complex, structu genomics, structural genomics consortium, SGC; HET: GCP; 2.40A {Homo sapiens}

Probab=98.64  E-value=4.9e-09  Score=66.80  Aligned_cols=30  Identities=27%  Similarity=0.552  Sum_probs=26.7

Q ss_pred             eecCCCccccceeeccCCCCC----CCchhhhhh
Q 028259           29 QIGFPTDVKHVAHIGWDGPSV----NSPSWMNEF   58 (211)
Q Consensus        29 eIG~PTDVkHVaHIGwDg~s~----n~PsWm~~f   58 (211)
                      +|+.||||+||+|||||..++    -+|.|...|
T Consensus         1 ~Is~Ptnf~H~~Hvg~d~~tG~f~Glp~eW~~ll   34 (35)
T 2odb_B            1 EISAPQNFQHRVHTSFDPKEGKFVGLPPQWQNIL   34 (35)
T ss_dssp             CBCCCEEEEEEEEEEEETTTTEEESCCHHHHHHH
T ss_pred             CCcCCCCCcCeeeeeECCCCCcccCCCHHHHHHh
Confidence            699999999999999998776    288998876

>2ov2_I Serine/threonine-protein kinase PAK 4; GTPase RAC3, small GTP binding protein, P21 RAC, RAS-related botulinum toxin substrate 3, signalling protein; HET: GCP; 2.10A {Homo sapiens}

Probab=98.62  E-value=5.8e-09  Score=66.43  Aligned_cols=30  Identities=23%  Similarity=0.559  Sum_probs=26.2

Q ss_pred             eecCCCccccceeeccCCCCCC----Cchhhhhh
Q 028259           29 QIGFPTDVKHVAHIGWDGPSVN----SPSWMNEF   58 (211)
Q Consensus        29 eIG~PTDVkHVaHIGwDg~s~n----~PsWm~~f   58 (211)
                      +|+.||||+||+|+|||..++.    +|.|...|
T Consensus         1 ~IS~Ptnf~H~~Hvg~d~~tg~~~Glp~eW~~ll   34 (35)
T 2ov2_I            1 EISAPSNFEHRVHTGFDQHEQKFTGLPRQWQSLI   34 (35)
T ss_dssp             CBCCCEEEEEEEEEEEETTTTEEESCCGGGTTTC
T ss_pred             CCcCCCCCcCeeeeeeCCCCCcccCCCHHHHHHh
Confidence            6999999999999999987652    88998776

>2lnh_A N-WAsp, neural wiskott-aldrich syndrome protein; protein complex, signaling protein-protein binding complex; NMR {Homo sapiens}

Probab=97.98  E-value=1.4e-06  Score=62.48  Aligned_cols=31  Identities=26%  Similarity=0.632  Sum_probs=27.7

Q ss_pred             CccccceeeccCCCCC-----CCchhhhhhhcCCCC
Q 028259           34 TDVKHVAHIGWDGPSV-----NSPSWMNEFKASELG   64 (211)
Q Consensus        34 TDVkHVaHIGwDg~s~-----n~PsWm~~fk~~~~~   64 (211)
                      ||++||+|+|||..++     -+|.|...|+.+++.
T Consensus         2 tnF~Hv~HVG~D~~tGf~~~glp~eW~~ll~~sGIs   37 (65)
T 2lnh_A            2 SNFQHIGHVGWDPNTGFDLNNLDPELKNLFDMCGIS   37 (65)
T ss_dssp             CCCSSCCSCCEETTTEECGGGCCTTHHHHHHHHTCC
T ss_pred             CCCEeeeeeeeCCCCCcCCcCCCHHHHHHHHHcCCC
Confidence            8999999999998886     299999999998865

>1ej5_A WAsp, wiskott-aldrich syndrome protein; alpha helix, beta-hairpin turn, blood clotting; NMR {Homo sapiens} SCOP: a.68.1.1 PDB: 1t84_A* 2k42_A

Probab=97.52  E-value=2.9e-05  Score=60.23  Aligned_cols=33  Identities=27%  Similarity=0.566  Sum_probs=27.5

Q ss_pred             CccccceeeccCCCCC-----CCchhhhhhhcCCCCCC
Q 028259           34 TDVKHVAHIGWDGPSV-----NSPSWMNEFKASELGGD   66 (211)
Q Consensus        34 TDVkHVaHIGwDg~s~-----n~PsWm~~fk~~~~~~s   66 (211)
                      |+++||+|+|||..++     -+|.|...|..+++...
T Consensus         1 tnF~Hv~HVG~D~~tGF~~~glppeWk~LL~~aGITe~   38 (107)
T 1ej5_A            1 SGFKHVSHVGWDPQNGFDVNNLDPDLRSLFSRAGISEA   38 (107)
T ss_dssp             CCCCCCCCCCCBTTTBCCTTTCCHHHHHHHHHTTCCHH
T ss_pred             CCCCcceecccCCCCCcCCCCCCHHHHHHHHHcCCCHH
Confidence            7999999999997654     38999999998887633

>4fie_A Serine/threonine-protein kinase PAK 4; kinase domain, protein ATP binding, phosphorylation, transferase; HET: SEP ANP; 3.11A {Homo sapiens}

Probab=95.11  E-value=0.0036  Score=56.42  Aligned_cols=36  Identities=22%  Similarity=0.516  Sum_probs=0.0

Q ss_pred             ceeecCCCccccceeeccCCCCCC----CchhhhhhhcCC
Q 028259           27 EMQIGFPTDVKHVAHIGWDGPSVN----SPSWMNEFKASE   62 (211)
Q Consensus        27 emeIG~PTDVkHVaHIGwDg~s~n----~PsWm~~fk~~~   62 (211)
                      ..+|+.||||+|+.|.|.|..++.    ++.|-..++.+.
T Consensus         5 ~~~is~p~n~~h~~hvg~d~~tg~f~glP~~W~~ll~~~~   44 (423)
T 4fie_A            5 RVEISAPSNFEHRVHTGFDQHEQKFTGLPRQWQSLIEESA   44 (423)
T ss_dssp             ----------------------------------------
T ss_pred             CCcccCCCCCCceeecCccCCCCCcccCCHHHHHHHHHhc
Confidence            468999999999999999976663    889988887544

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	211
d1ej5a_	107	Wiscott-Aldrich syndrome protein, WASP, C-terminal	97.53

>d1ej5a_ a.68.1.1 (A:) Wiscott-Aldrich syndrome protein, WASP, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: Wiscott-Aldrich syndrome protein, WASP, C-terminal domain
superfamily: Wiscott-Aldrich syndrome protein, WASP, C-terminal domain
family: Wiscott-Aldrich syndrome protein, WASP, C-terminal domain
domain: Wiscott-Aldrich syndrome protein, WASP, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.53  E-value=1.3e-05  Score=60.88  Aligned_cols=32  Identities=31%  Similarity=0.658  Sum_probs=28.1

Q ss_pred             CccccceeeccCCCCC---C--CchhhhhhhcCCCCC
Q 028259           34 TDVKHVAHIGWDGPSV---N--SPSWMNEFKASELGG   65 (211)
Q Consensus        34 TDVkHVaHIGwDg~s~---n--~PsWm~~fk~~~~~~   65 (211)
                      |+++||+|+|||..++   +  +|.|-..|+.+++..
T Consensus         1 snF~Hv~HVG~D~~tGf~~~glp~eW~~lL~~sGIsk   37 (107)
T d1ej5a_           1 SGFKHVSHVGWDPQNGFDVNNLDPDLRSLFSRAGISE   37 (107)
T ss_dssp             CCCCCCCCCCCBTTTBCCTTTCCHHHHHHHHHTTCCH
T ss_pred             CCCeeeeeeeecCCCCccccCCCHHHHHHHHHcCCCH
Confidence            7899999999999876   2  899999999998763