Citrus Sinensis ID: 028279

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-
Protein Sequence
MIIRKGMTEHNEEQVLLLRRRRRRCCLIATGVAILLLLAFFIIILILALTVFKTKQPITELQSAKIDGIAPRVTFPAVDIQLNLTLDLQILVKNRNRASFKHGSGKSLLLYRGKQVGVVDIDPGLIPARGSAVLPSRLTLQVDEVASNLSALIRDVLDGELVMETHTRIPGRVNLLGIFKKHIVATSECQFTFSVLAFKIQSQKCKNKARF
Secondary Structure (PSIPRED)
ccccccccccccccccccccccccEEHHHHHHHHHHHHHHHHHHHHHHEEEEEccccEEEEEEEEEEEEccccccccccEEEEEEEEEEEEEEcccEEEEEEccEEEEEEEccEEEEEEEcccccccccccEEEccEEEEEEEHHcccHHHHHHHHHccEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEccccEEEEccccccccc
Secondary Structure Prediction (SSPRO)
cccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccEEEEEEEEEcccccccccccccEEEEEEEEEEEEEEccccEEEEEcccEEEEEEcccEEEEEEcccccccccccEEEEEEEEEEHHHHHccHHHHHHHHHcccEEEEEEEEEccEEEEEEEEEEEEEEEEEEEEEEEEcccEEEEccccccEcc
Coil and Loop (DISEMBL)
miirkgmtehNEEQVLLLRRRRRRCCLIATGVAILLLLAFFIIILILALTVfktkqpitelqsakidgiaprvtfpavdiqLNLTLDLQILVKNrnrasfkhgsgkslllyrgkqvgvvdidpglipargsavlpsrltLQVDEVASNLSALIRDVLDGELVMETHTRIPGRVNLLGIFKKHIVATSECQFTFSVLAFKIQSQKCKNKARF
Flexible Loop (DISEMBL)
miirkgmtehneeQVLLLRRRRRRCCLIATGVAILLLLAFFIIILILALTVFKTKQPITELqsakidgiaPRVTFPAVDIQLNLTLDLQILVKNRnrasfkhgsgkslllyrGKQVGVVDIDPGLIPARGSAVLPSRLTLQVDEVASNLSALIRDVLDGELVMETHTRIPGRVNLLGIFKKHIVATSECQFTFSVLAfkiqsqkcknkarf
Low Complexity Region (SEG)
MIIRKGMTEHNEEQVlllrrrrrrcclIATGVaillllaffiiililalTVFKTKQPITELQSAKIDGIAPRVTFPAVDIQLNLTLDLQILVKNRNRASFKHGSGKSLLLYRGKQVGVVDIDPGLIPARGSAVLPSRLTLQVDEVASNLSALIRDVLDGELVMETHTRIPGRVNLLGIFKKHIVATSECQFTFSVLAFKIQSQKCKNKARF
Disordered region (IsUnstruct)
*************QVLLLRRRRRRCCLIATGVAILLLLAFFIIILILALTVFKTKQPITELQSAKIDGIAPRVTFPAVDIQLNLTLDLQILVKNRNRASFKHGSGKSLLLYRGKQVGVVDIDPGLIPARGSAVLPSRLTLQVDEVASNLSALIRDVLDGELVMETHTRIPGRVNLLGIFKKHIVATSECQFTFSVLAFKIQ**********
Disordered Region (DISOPRED)
*************************CLIATGVAILLLLAFFIIILILALTVFKTKQPITELQSAKIDGIAPRVTFPAVDIQLNLTLDLQILVKNRNRASFKHGSGKSLLLYRGKQVGVVDIDPGLIPARGSAVLPSRLTLQVDEVASNL*A***DVLDGELVMETHTRIPGRVNLLGIFKKHIVATSECQFTFSVLAFKIQSQKCKN*ARF
Disordered Region (DISEMBL)
MIIRKGMTEHNEEQVLLLRRRRRRCCLIATGVAILLLLAFFIIILILALTVFKTKQPITELQSAKIDGIAPRVTFPAVDIQLNLTLDLQILVKNRNRASFKHGSGKSLLLYRGKQVGVVDIDPGLIPARGSAVLPSRLTLQVDEVASNLSALIRDVLDGELVMETHTRIPGRVNLLGIFKKHIVATSECQFTFSVLAFKIQSQKCKNKARF
Disordered Region (DISPRO)
*******TEHNEEQVLLLRRRRRRCCLIATGVAILLLLAFFIIILILALTVFKTKQPITELQSAKIDGIAPRVTFPAVDIQLNLTLDLQILVKNRNRASFKHGSGKSLLLYRGKQVGVVDIDPGLIPARGSAVLPSRLTLQVDEVASNLSALIRDVLDGELVMETHTRIPGRVNLLGIFKKHIVATSECQFTFSVLAFKIQSQKCKNK***
Transmembrane Helix (TMHMM)
iiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
iiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MIIRKGMTEHNEEQVLLLRRRRRRCCLIATGVAILLLLAFFIIILILALTVFKTKQPITELQSAKIDGIAPRVTFPAVDIQLNLTLDLQILVKNRNRASFKHGSGKSLLLYRGKQVGVVDIDPGLIPARGSAVLPSRLTLQVDEVASNLSALIRDVLDGELVMETHTRIPGRVNLLGIFKKHIVATSECQFTFSVLAFKIQSQKCKNKARF
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

No hits with e-value below 0.001 by BLAST

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	211
351726210	221	uncharacterized protein LOC100527182 [Gl	0.981	0.936	0.542	1e-56
147795587	436	hypothetical protein VITISV_022239 [Viti	0.886	0.428	0.590	5e-55
225439078	215	PREDICTED: uncharacterized protein LOC10	0.914	0.897	0.590	5e-55
239056185	215	unknown gene [Vitis vinifera]	0.881	0.865	0.602	6e-54
255582048	204	conserved hypothetical protein [Ricinus	0.966	1.0	0.6	3e-53
224069066	173	predicted protein [Populus trichocarpa]	0.763	0.930	0.596	5e-51
224140647	201	predicted protein [Populus trichocarpa]	0.952	1.0	0.585	5e-51
357506757	211	hypothetical protein MTR_7g074250 [Medic	0.957	0.957	0.527	4e-50
388508882	211	unknown [Medicago truncatula]	0.957	0.957	0.522	6e-49
125533193	235	hypothetical protein OsI_34899 [Oryza sa	0.753	0.676	0.443	9e-36

>gi|351726210|ref|NP_001236095.1| uncharacterized protein LOC100527182 [Glycine max] gi|255631732|gb|ACU16233.1| unknown [Glycine max]

 Score =  225 bits (573), Expect = 1e-56,   Method: Compositional matrix adjust.
 Identities = 114/210 (54%), Positives = 160/210 (76%), Gaps = 3/210 (1%)

Query: 5   KGMTEHNEEQVLLLRRR---RRRCCLIATGVAILLLLAFFIIILILALTVFKTKQPITEL 61
           +  +  + EQV+++ ++   RRR C++ TG  +LLL+   I+ +ILA T+FKTK+P T+L
Sbjct: 12  ESQSNQDHEQVVVISQKKLKRRRVCVMVTGAVLLLLIVLVIVAIILAFTLFKTKEPRTQL 71

Query: 62  QSAKIDGIAPRVTFPAVDIQLNLTLDLQILVKNRNRASFKHGSGKSLLLYRGKQVGVVDI 121
            SA ++GIAPR+T PA+D+Q+N TLDL++ V+NRNRAS KH  GKS+LLY+GK+VG   I
Sbjct: 72  VSATLEGIAPRLTLPAIDLQINATLDLKVRVENRNRASLKHEGGKSVLLYKGKEVGDAYI 131

Query: 122 DPGLIPARGSAVLPSRLTLQVDEVASNLSALIRDVLDGELVMETHTRIPGRVNLLGIFKK 181
           +PGLIP+RGS +LP RLTLQV+++ASNL++L+ D++ GE+ M+T TRIPG+V  LG  KK
Sbjct: 132 NPGLIPSRGSTILPCRLTLQVEKLASNLTSLVGDLMGGEISMDTVTRIPGKVTFLGFIKK 191

Query: 182 HIVATSECQFTFSVLAFKIQSQKCKNKARF 211
           HIV  S CQFT SV   KI +Q CK+KA+ 
Sbjct: 192 HIVVESNCQFTISVSELKITNQTCKSKAKL 221

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147795587|emb|CAN63322.1| hypothetical protein VITISV_022239 [Vitis vinifera]

 Score =  219 bits (559), Expect = 5e-55,   Method: Compositional matrix adjust.
 Identities = 114/193 (59%), Positives = 148/193 (76%)

Query: 19  RRRRRRCCLIATGVAILLLLAFFIIILILALTVFKTKQPITELQSAKIDGIAPRVTFPAV 78
           R  RR  CLIA G  I L++  FI++LIL LTVFK KQP T+L SA +DGI+PR++FP V
Sbjct: 244 RHVRRXRCLIAIGXVIFLIMLLFIVLLILVLTVFKAKQPKTQLVSATLDGISPRISFPVV 303

Query: 79  DIQLNLTLDLQILVKNRNRASFKHGSGKSLLLYRGKQVGVVDIDPGLIPARGSAVLPSRL 138
            IQLN+TL+LQILV+N N ASFKHGSG+S+LLY+G+QVG V+I PG IP R S  +PSRL
Sbjct: 304 RIQLNITLNLQILVENPNHASFKHGSGQSILLYQGEQVGDVEIYPGNIPGRRSTTIPSRL 363

Query: 139 TLQVDEVASNLSALIRDVLDGELVMETHTRIPGRVNLLGIFKKHIVATSECQFTFSVLAF 198
           TLQVD+VAS    L++D+L G+L M+T TRIPGRV  LG+ +KH+VA S+C F  +V   
Sbjct: 364 TLQVDKVASETLHLVQDILAGQLAMDTRTRIPGRVTFLGLIRKHVVAISDCHFVIAVPEM 423

Query: 199 KIQSQKCKNKARF 211
           K++SQ+CK + +F
Sbjct: 424 KVRSQECKERTKF 436

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225439078|ref|XP_002264938.1| PREDICTED: uncharacterized protein LOC100248515 [Vitis vinifera] gi|296085821|emb|CBI31145.3| unnamed protein product [Vitis vinifera]

 Score =  219 bits (558), Expect = 5e-55,   Method: Compositional matrix adjust.
 Identities = 114/193 (59%), Positives = 148/193 (76%)

Query: 19  RRRRRRCCLIATGVAILLLLAFFIIILILALTVFKTKQPITELQSAKIDGIAPRVTFPAV 78
           R  RR  CLIA G  I L++  FI++LIL LTVFK KQP T+L SA +DGI+PR++FP V
Sbjct: 23  RHVRRHRCLIAIGFVIFLIMLLFIVLLILVLTVFKAKQPKTQLVSATLDGISPRISFPVV 82

Query: 79  DIQLNLTLDLQILVKNRNRASFKHGSGKSLLLYRGKQVGVVDIDPGLIPARGSAVLPSRL 138
            IQLN+TL+LQILV+N N ASFKHGSG+S+LLY+G+QVG V+I PG IP R S  +PSRL
Sbjct: 83  RIQLNITLNLQILVENPNHASFKHGSGQSILLYQGEQVGDVEIYPGNIPGRRSTTIPSRL 142

Query: 139 TLQVDEVASNLSALIRDVLDGELVMETHTRIPGRVNLLGIFKKHIVATSECQFTFSVLAF 198
           TLQVD+VAS    L++D+L G+L M+T TRIPGRV  LG+ +KH+VA S+C F  +V   
Sbjct: 143 TLQVDKVASETLHLVQDILAGQLAMDTRTRIPGRVTFLGLIRKHVVAISDCHFVIAVPEM 202

Query: 199 KIQSQKCKNKARF 211
           K++SQ+CK + +F
Sbjct: 203 KVRSQECKERTKF 215

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|239056185|emb|CAQ58620.1| unknown gene [Vitis vinifera]

 Score =  216 bits (549), Expect = 6e-54,   Method: Compositional matrix adjust.
 Identities = 112/186 (60%), Positives = 144/186 (77%)

Query: 26  CLIATGVAILLLLAFFIIILILALTVFKTKQPITELQSAKIDGIAPRVTFPAVDIQLNLT 85
           CLIA GV I L++  FI++LIL LTVFK KQP T+L SA +DGI+PR++FP V IQLN+T
Sbjct: 30  CLIAIGVVIFLIMLLFIVLLILVLTVFKAKQPKTQLVSATLDGISPRISFPVVRIQLNIT 89

Query: 86  LDLQILVKNRNRASFKHGSGKSLLLYRGKQVGVVDIDPGLIPARGSAVLPSRLTLQVDEV 145
           L+LQILV+N N ASFKHGSG+S+LLY+G QVG V+I PG IP R S  +PSRLTLQVD V
Sbjct: 90  LNLQILVENPNHASFKHGSGQSILLYQGGQVGDVEIYPGNIPGRRSTTIPSRLTLQVDMV 149

Query: 146 ASNLSALIRDVLDGELVMETHTRIPGRVNLLGIFKKHIVATSECQFTFSVLAFKIQSQKC 205
           AS    L++D+L G+L M+T TRIPGRV  LG+ +KH+VA S+C F  +V   K++SQ+C
Sbjct: 150 ASETLHLVQDILAGQLAMDTRTRIPGRVTFLGLIRKHVVAISDCHFVIAVPEMKVRSQEC 209

Query: 206 KNKARF 211
           K + +F
Sbjct: 210 KERTKF 215

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255582048|ref|XP_002531821.1| conserved hypothetical protein [Ricinus communis] gi|223528555|gb|EEF30578.1| conserved hypothetical protein [Ricinus communis]

 Score =  213 bits (543), Expect = 3e-53,   Method: Compositional matrix adjust.
 Identities = 123/205 (60%), Positives = 162/205 (79%), Gaps = 1/205 (0%)

Query: 7   MTEHNEEQVLLLRRRRRRCCLIATGVAILLLLAFFIIILILALTVFKTKQPITELQSAKI 66
           MTE N+ Q+   R+RRRRCC I  GVA+ L+L  FIIILILALTVFK K+P  +L SA +
Sbjct: 1   MTETND-QLPSKRQRRRRCCFIVGGVALFLVLLLFIIILILALTVFKAKEPKVDLVSATL 59

Query: 67  DGIAPRVTFPAVDIQLNLTLDLQILVKNRNRASFKHGSGKSLLLYRGKQVGVVDIDPGLI 126
           DGI+PR++FP ++IQLN++L+L +LV NRN ASFKHG+GK+ LLY+ KQ+G  D+ PG+I
Sbjct: 60  DGISPRISFPVINIQLNISLNLNLLVHNRNYASFKHGAGKTSLLYQDKQIGEADLYPGVI 119

Query: 127 PARGSAVLPSRLTLQVDEVASNLSALIRDVLDGELVMETHTRIPGRVNLLGIFKKHIVAT 186
           P+RGSA L  RLT++VDE+AS+++ LI+DVL G+LVMET T IPGRV  LGI KKH VAT
Sbjct: 120 PSRGSAPLACRLTIEVDELASDMTELIQDVLAGQLVMETRTSIPGRVTFLGIIKKHAVAT 179

Query: 187 SECQFTFSVLAFKIQSQKCKNKARF 211
           S C+FT +  A KIQ+Q+C++K + 
Sbjct: 180 SACRFTIAFPAMKIQNQECRSKTKL 204

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224069066|ref|XP_002326266.1| predicted protein [Populus trichocarpa] gi|222833459|gb|EEE71936.1| predicted protein [Populus trichocarpa]

 Score =  206 bits (524), Expect = 5e-51,   Method: Compositional matrix adjust.
 Identities = 96/161 (59%), Positives = 129/161 (80%)

Query: 51  VFKTKQPITELQSAKIDGIAPRVTFPAVDIQLNLTLDLQILVKNRNRASFKHGSGKSLLL 110
           VFK K+P TEL SA ++GI+PR++F  V IQLN+ L+L +LVKN N ASFKHG GKS LL
Sbjct: 13  VFKPKEPRTELLSATLEGISPRISFSPVSIQLNIFLNLTLLVKNPNHASFKHGPGKSYLL 72

Query: 111 YRGKQVGVVDIDPGLIPARGSAVLPSRLTLQVDEVASNLSALIRDVLDGELVMETHTRIP 170
           Y+G QVG  D+ PGLIP++G+  LPS+LT++VDE+A+++SALI DVL G+LV+ET TRIP
Sbjct: 73  YQGDQVGEADLCPGLIPSKGTQTLPSQLTIEVDEMATHISALISDVLQGQLVIETRTRIP 132

Query: 171 GRVNLLGIFKKHIVATSECQFTFSVLAFKIQSQKCKNKARF 211
           GRV+ L IFKKH VATS+C+   ++ + KIQSQ+C++K + 
Sbjct: 133 GRVSFLKIFKKHAVATSDCRLAIAIPSMKIQSQECESKTKL 173

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224140647|ref|XP_002323693.1| predicted protein [Populus trichocarpa] gi|222868323|gb|EEF05454.1| predicted protein [Populus trichocarpa]

 Score =  206 bits (524), Expect = 5e-51,   Method: Compositional matrix adjust.
 Identities = 120/205 (58%), Positives = 153/205 (74%), Gaps = 4/205 (1%)

Query: 7   MTEHNEEQVLLLRRRRRRCCLIATGVAILLLLAFFIIILILALTVFKTKQPITELQSAKI 66
           MTE N++     R  + R C I  GV +LL L  FII LIL LTVFK K P T+L SA +
Sbjct: 1   MTETNDQG----RGPKARRCFIVGGVILLLQLLLFIIFLILVLTVFKPKAPQTQLLSATL 56

Query: 67  DGIAPRVTFPAVDIQLNLTLDLQILVKNRNRASFKHGSGKSLLLYRGKQVGVVDIDPGLI 126
           +GI+PR++ P V+IQLN+TL+L +LVKN N  SFKHG GKS LLYRG +VG  D+ PGLI
Sbjct: 57  EGISPRISLPVVNIQLNITLNLTLLVKNPNHVSFKHGPGKSYLLYRGDEVGDADLYPGLI 116

Query: 127 PARGSAVLPSRLTLQVDEVASNLSALIRDVLDGELVMETHTRIPGRVNLLGIFKKHIVAT 186
           P++G+  LPSRLT+QVD++A+++SALI DVL G++V+ET TRIPGR   L I KKH VAT
Sbjct: 117 PSKGTETLPSRLTIQVDQMAADMSALISDVLAGQIVLETRTRIPGRATFLKIIKKHAVAT 176

Query: 187 SECQFTFSVLAFKIQSQKCKNKARF 211
           SEC+FT  + + KIQSQ+CKNK +F
Sbjct: 177 SECRFTIDIPSLKIQSQECKNKTKF 201

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357506757|ref|XP_003623667.1| hypothetical protein MTR_7g074250 [Medicago truncatula] gi|355498682|gb|AES79885.1| hypothetical protein MTR_7g074250 [Medicago truncatula]

 Score =  203 bits (516), Expect = 4e-50,   Method: Compositional matrix adjust.
 Identities = 107/203 (52%), Positives = 147/203 (72%), Gaps = 1/203 (0%)

Query: 9   EHNEEQVLL-LRRRRRRCCLIATGVAILLLLAFFIIILILALTVFKTKQPITELQSAKID 67
           ++ EEQ L+   ++ R  C+    + +LLLL   I+ +ILA T+FK K P T++ SA ++
Sbjct: 8   QYQEEQALMNPPKKGRNKCVTCICIVLLLLLVLVIVCVILAFTLFKPKDPKTKVVSATLE 67

Query: 68  GIAPRVTFPAVDIQLNLTLDLQILVKNRNRASFKHGSGKSLLLYRGKQVGVVDIDPGLIP 127
           GI+PR+TFPA++IQLN+TL+L+I V N+N ASFKH  G SLL+Y+G +VG  DI  GLIP
Sbjct: 68  GISPRLTFPAINIQLNVTLNLKIQVDNQNHASFKHADGTSLLMYKGVEVGDTDIYAGLIP 127

Query: 128 ARGSAVLPSRLTLQVDEVASNLSALIRDVLDGELVMETHTRIPGRVNLLGIFKKHIVATS 187
           A+GS +LP RLTLQ D++ASN++ L+ D++ G+L +E  TRIPGRV  LG  KKHIVA S
Sbjct: 128 AKGSTILPCRLTLQADKLASNVTGLLGDLMGGQLSLEAVTRIPGRVTFLGFIKKHIVAKS 187

Query: 188 ECQFTFSVLAFKIQSQKCKNKAR 210
            CQF F     +I+SQ CKNKA+
Sbjct: 188 NCQFVFGFPDMEIKSQICKNKAK 210

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388508882|gb|AFK42507.1| unknown [Medicago truncatula]

 Score =  199 bits (506), Expect = 6e-49,   Method: Compositional matrix adjust.
 Identities = 106/203 (52%), Positives = 146/203 (71%), Gaps = 1/203 (0%)

Query: 9   EHNEEQVLL-LRRRRRRCCLIATGVAILLLLAFFIIILILALTVFKTKQPITELQSAKID 67
           ++ EEQ L+   ++ R  C+    + +LLLL   I+ +ILA T+FK K P T++ SA ++
Sbjct: 8   QYQEEQALMNPPKKGRNKCVTCICIVLLLLLVLVIVCVILAFTLFKPKDPKTKVVSATLE 67

Query: 68  GIAPRVTFPAVDIQLNLTLDLQILVKNRNRASFKHGSGKSLLLYRGKQVGVVDIDPGLIP 127
           GI+PR+TFPA++IQLN+TL+L+I V N+N ASFK   G SLL+Y+G +VG  DI  GLIP
Sbjct: 68  GISPRLTFPAINIQLNVTLNLKIQVDNQNHASFKRADGTSLLMYKGVEVGDTDIYAGLIP 127

Query: 128 ARGSAVLPSRLTLQVDEVASNLSALIRDVLDGELVMETHTRIPGRVNLLGIFKKHIVATS 187
           A+GS +LP RLTLQ D++ASN++ L+ D++ G+L +E  TRIPGRV  LG  KKHIVA S
Sbjct: 128 AKGSTILPCRLTLQADKLASNVTGLLGDLMGGQLSLEAVTRIPGRVTFLGFIKKHIVAKS 187

Query: 188 ECQFTFSVLAFKIQSQKCKNKAR 210
            CQF F     +I+SQ CKNKA+
Sbjct: 188 NCQFVFGFPDMEIKSQICKNKAK 210

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|125533193|gb|EAY79741.1| hypothetical protein OsI_34899 [Oryza sativa Indica Group]

 Score =  155 bits (393), Expect = 9e-36,   Method: Compositional matrix adjust.
 Identities = 71/160 (44%), Positives = 106/160 (66%), Gaps = 1/160 (0%)

Query: 53  KTKQPITELQSAKIDGIAPRVTFPAVDIQLNLTLDLQILVKNRNRASFKHGSG-KSLLLY 111
           + + P T L S ++ G++PR++FPA+ +QLN+TL + + V N N ASF + +G  + L Y
Sbjct: 76  RVRDPTTRLVSTRLIGLSPRLSFPAMSVQLNVTLLITVAVHNPNPASFTYATGGHTDLTY 135

Query: 112 RGKQVGVVDIDPGLIPARGSAVLPSRLTLQVDEVASNLSALIRDVLDGELVMETHTRIPG 171
           RG  VG  +IDPG IP+RG A +   LTLQ D  A +L+ L+ DV+ G + +E  TRIPG
Sbjct: 136 RGAHVGDAEIDPGRIPSRGDANVTMALTLQADRFAGDLTQLVSDVMGGSVALEASTRIPG 195

Query: 172 RVNLLGIFKKHIVATSECQFTFSVLAFKIQSQKCKNKARF 211
           RV +LG+FK+H VA S+C F F V    ++SQ+C ++ + 
Sbjct: 196 RVAILGVFKRHAVAYSDCHFVFGVTEMAVRSQQCSDRTKL 235

Source: Oryza sativa Indica Group

Species: Oryza sativa

Genus: Oryza

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

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Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	211
TAIR|locus:504955821	189	AT3G05975 "AT3G05975" [Arabido	0.753	0.841	0.381	5e-28
TAIR|locus:2080320	235	AT3G54200 "AT3G54200" [Arabido	0.739	0.663	0.343	1.7e-20
TAIR|locus:2062917	221	AT2G46150 "AT2G46150" [Arabido	0.739	0.705	0.288	3.8e-14
TAIR|locus:2142040	215	AT4G13270 "AT4G13270" [Arabido	0.606	0.595	0.302	2.5e-08
TAIR|locus:2014250	342	AT1G64450 [Arabidopsis thalian	0.540	0.333	0.278	1.2e-06
TAIR|locus:2138136	187	AT4G23930 "AT4G23930" [Arabido	0.710	0.802	0.263	2.7e-06
TAIR|locus:2100177	186	AT3G44380 "AT3G44380" [Arabido	0.549	0.623	0.309	5.5e-06

TAIR|locus:504955821 AT3G05975 "AT3G05975" [Arabidopsis thaliana (taxid:3702)]

 Score = 313 (115.2 bits), Expect = 5.0e-28, P = 5.0e-28
 Identities = 61/160 (38%), Positives = 101/160 (63%)

Query:    51 VFKTKQPITELQSAKIDGIAPRVTFPAVDIQLNLTLDLQILVKNRNRASFKHGSGKSLLL 110
             VFK K PI +  S+ +DGI+  ++ P  ++QLN TL L++L+KN N A F++ + ++L+ 
Sbjct:    30 VFKPKHPILQTVSSTVDGISTNISLP-YEVQLNFTLTLEMLLKNPNVADFEYKTVENLVY 88

Query:   111 YRGKQVGVVDIDPGLIPARGSAVLPSRLTLQVDEVASNLSALIRDVLDGELVMETHTRIP 170
             YR   VG + +    +PA+GS +LP  L LQ+D+  +NL  +++DVL G++VMET  ++P
Sbjct:    89 YRDTLVGNLTLPSSTLPAKGSVLLPCPLFLQLDKFVANLGDIVQDVLHGKIVMETRAKMP 148

Query:   171 GRVNLLGIFKKHIVATSECQFTFSVLAFKIQSQKCKNKAR 210
             G++ LLGIFK  + + S C       +  ++ Q C  K +
Sbjct:   149 GKITLLGIFKIPLDSISHCNLVLGFPSMVVEDQVCDLKTK 188

GO:0003674 "molecular_function" evidence=ND

GO:0005576 "extracellular region" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2080320 AT3G54200 "AT3G54200" [Arabidopsis thaliana (taxid:3702)]

 Score = 242 (90.2 bits), Expect = 1.7e-20, P = 1.7e-20
 Identities = 54/157 (34%), Positives = 86/157 (54%)

Query:    50 TVFKTKQPITELQSAKIDGIAPRVTFPAVDIQLNLTLDLQILVKNRNRASFKHGSGKSLL 109
             T+FK K+P T + S  +D +   V    + + LNLTL++ + +KN NR  F + S  +LL
Sbjct:    75 TLFKPKRPTTTIDSVTVDRLQASVNPLLLKVLLNLTLNVDLSLKNPNRIGFSYDSSSALL 134

Query:   110 LYRGKQVGVVDIDPGLIPARGSAVLPSRLTLQVDEVASNLSALIRDVLDGELVMETHTRI 169
              YRG+ +G   +    I AR +  L   LTL  D + S  + L+ DV+ G + + T  ++
Sbjct:   135 NYRGQVIGEAPLPANRIAARKTVPLNITLTLMADRLLSE-TQLLSDVMAGVIPLNTFVKV 193

Query:   170 PGRVNLLGIFKKHIVATSECQFTFSVLAFKIQSQKCK 206
              G+V +L IFK  + ++S C  + SV    + SQ CK
Sbjct:   194 TGKVTVLKIFKIKVQSSSSCDLSISVSDRNVTSQHCK 230

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0046658 "anchored to plasma membrane" evidence=IDA

GO:0005886 "plasma membrane" evidence=IDA

GO:0009506 "plasmodesma" evidence=IDA

TAIR|locus:2062917 AT2G46150 "AT2G46150" [Arabidopsis thaliana (taxid:3702)]

 Score = 182 (69.1 bits), Expect = 3.8e-14, P = 3.8e-14
 Identities = 47/163 (28%), Positives = 84/163 (51%)

Query:    50 TVFKTKQPITELQSAKIDGIAPRVTFPAVDIQL---NLTLDLQILVKNRNRASFKHGSGK 106
             TVF+ K PI ++    ++G+   VT     +QL   N+++ + + VKN N ASFK+ +  
Sbjct:    59 TVFRVKDPIIKMNGVMVNGL-DSVT-GTNQVQLLGTNISMIVDVSVKNPNTASFKYSNTT 116

Query:   107 SLLLYRGKQVGVVDIDPGLIPARGSAVLPSRLTLQVDEVASNLSALIRDVLDGELV-MET 165
             + + Y+G  VG     PG      ++ +   + + +D + S+   L R++    LV + +
Sbjct:   117 TDIYYKGTLVGEAHGLPGKARPHRTSRMNVTVDIMLDRILSD-PGLGREISRSGLVNVWS 175

Query:   166 HTRIPGRVNLLGIFKKHIVATSECQFTFSVLAFKIQSQKCKNK 208
             +TR+ G+V ++GI KKH+     C    ++    IQ   CK K
Sbjct:   176 YTRVGGKVKIMGIVKKHVTVKMNCTMAVNITGQAIQDVDCKKK 218

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

GO:0005886 "plasma membrane" evidence=IDA

TAIR|locus:2142040 AT4G13270 "AT4G13270" [Arabidopsis thaliana (taxid:3702)]

 Score = 132 (51.5 bits), Expect = 2.5e-08, P = 2.5e-08
 Identities = 39/129 (30%), Positives = 65/129 (50%)

Query:    80 IQLNLTLDLQILVKNRNRASFKHGSGKSLLLYRGKQVGVVDIDPGLIPARGSAVLPSRLT 139
             I L+L+  L I V+NR+  S  + S    + YRG+++G+V    G + AR S+ + + L 
Sbjct:    88 IALDLSFSLTIKVRNRDFFSLDYDSLVVSIGYRGRELGLVKSKGGHLKARDSSYIDATLE 147

Query:   140 LQVDEVASNLSALIRDVLDGELVMETHTRIPGRVNLLGIFKKHIVATSECQFTFSVLAFK 199
             L   EV  ++  LI D+  G +  +T  ++ G + +L +F   I     C+   +V   K
Sbjct:   148 LDGLEVVHDVIYLIGDLAKGVIPFDTIAQVQGDLGVL-LFNIPIQGKVSCEVYVNVNNQK 206

Query:   200 IQSQKCKNK 208
             I  Q C  K
Sbjct:   207 ISHQDCHRK 215

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0000902 "cell morphogenesis" evidence=RCA

GO:0016049 "cell growth" evidence=RCA

GO:0048193 "Golgi vesicle transport" evidence=RCA

TAIR|locus:2014250 AT1G64450 [Arabidopsis thaliana (taxid:3702)]

 Score = 95 (38.5 bits), Expect = 1.2e-06, Sum P(2) = 1.2e-06
 Identities = 34/122 (27%), Positives = 52/122 (42%)

Query:    50 TVFKTKQPITELQSAKIDGIAPRVTFPAVDIQLNLTLDLQILVKNRNRASFKHGSGKSLL 109
             TVFK K P   + + ++    P  +F   +   N +    + V+N NRA F H      L
Sbjct:    39 TVFKPKDPKISVNAVQL----P--SFAVSNNTANFSFSQYVAVRNPNRAVFSHYDSSIQL 92

Query:   110 LYRGKQVGVVDIDPGLIPARGSAVLPSRLTLQVDEVASNLSALIRDVLDGELVMETHTRI 169
             LY G QVG + I  G I +     + +  T+    ++   S+ I  V     V+     I
Sbjct:    93 LYSGNQVGFMFIPAGKIDSGRIQYMAATFTVHSFPISPPSSSAISTV--SAAVIPDSPII 150

Query:   170 PG 171
             PG
Sbjct:   151 PG 152

GO:0005576 "extracellular region" evidence=ISM

GO:0048451 "petal formation" evidence=RCA

GO:0048453 "sepal formation" evidence=RCA

TAIR|locus:2138136 AT4G23930 "AT4G23930" [Arabidopsis thaliana (taxid:3702)]

 Score = 119 (46.9 bits), Expect = 2.7e-06, P = 2.7e-06
 Identities = 43/163 (26%), Positives = 73/163 (44%)

Query:    50 TVFKTKQPITELQSAKIDGIAPRVTFPAVDIQLNLTLDLQILVKNRNRASFKHGSGKSLL 109
             TVF+ + P   + S K+    P  +F   +  ++ T      V+N NRA+F H +    L
Sbjct:    31 TVFRPRDPEISVTSVKV----P--SFSVANSSVSFTFSQFSAVRNPNRAAFSHYNNVIQL 84

Query:   110 LYRGKQVGVVDIDPGLIPARGSAVLPSRLTLQVDEVA----SNLSALIRDVLD--GELV- 162
              Y G ++G   +  G I +  +  + +  ++Q   +A    S +SA      D  G  V 
Sbjct:    85 FYYGNRIGYTFVPAGEIESGRTKRMLATFSVQSFPLAAASSSQISAAQFQNSDRSGSTVE 144

Query:   163 METHTRIPGRVNLLGIFKKHIVATSECQFTFSVLAFKIQSQKC 205
             +E+   + GRV +LG+F   I A   C+   S     I + +C
Sbjct:   145 IESKLEMAGRVRVLGLFTHRIAAKCNCRIAISSSDGSIVAVRC 187

GO:0003674 "molecular_function" evidence=ND

GO:0005576 "extracellular region" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2100177 AT3G44380 "AT3G44380" [Arabidopsis thaliana (taxid:3702)]

 Score = 117 (46.2 bits), Expect = 5.5e-06, P = 5.5e-06
 Identities = 39/126 (30%), Positives = 60/126 (47%)

Query:    53 KTKQPITELQSAKIDGIAPRVTFPAVDIQLNLTLDLQILVKNRNRASFKHGSGKSLLLYR 112
             K K P   L S  ID  + ++  P +D +L LT+     V N N A+  + S K  +LY 
Sbjct:    32 KPKDPTFHLIS--IDLTSLKLNLPVLDAELMLTVH----VTNPNIAAIHYSSTKMTILYD 85

Query:   113 GKQVGVVDIDPGLIPARGSAVLPSRLTLQVD--EVASNLSALIRDVLDGELVMETHTRIP 170
             G  +G  ++  G  PAR   +L  RL  ++D  E+A +      DV + E+ +E    I 
Sbjct:    86 GTVLGSAEVKAGSQPARSCQLL--RLPARLDGMELAQHARQFFSDVANREMKLEAKLTIE 143

Query:   171 GRVNLL 176
             G   +L
Sbjct:   144 GAAKVL 149


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.321   0.137   0.380    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      211       182   0.00098  109 3  11 22  0.40    32
                                                     31  0.40    35


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  7
  No. of states in DFA:  536 (57 KB)
  Total size of DFA:  123 KB (2081 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  14.57u 0.11s 14.68t   Elapsed:  00:00:01
  Total cpu time:  14.57u 0.11s 14.68t   Elapsed:  00:00:01
  Start:  Fri May 10 11:38:29 2013   End:  Fri May 10 11:38:30 2013

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0009269 "response to desiccation" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	211
PLN03160	219	PLN03160, PLN03160, uncharacterized protein; Provi	6e-32
pfam03168	98	pfam03168, LEA_2, Late embryogenesis abundant prot	3e-06

>gnl|CDD|215609 PLN03160, PLN03160, uncharacterized protein; Provisional

 Score =  115 bits (289), Expect = 6e-32
 Identities = 65/197 (32%), Positives = 98/197 (49%), Gaps = 13/197 (6%)

Query: 17  LLRRRRRRC--CLIATGVAILLLLAFFIIILILALTVFKTKQPITELQSAKIDGIAPRVT 74
           L + RRR C  C      A LL+LA    IL+L  TVF+ K P+ ++    +  +   + 
Sbjct: 28  LKKTRRRNCIKCCGCI-TATLLILA--TTILVLVFTVFRVKDPVIKMNGVTVTKLE-LIN 83

Query: 75  FPAVDIQLNLTLDLQILVKNRNRASFKHGSGKSLLLYRGKQVGVVDIDPGLIPARGSAVL 134
              +    N+TL   + VKN N ASFK+ +  + + Y G  VG     PG   AR +   
Sbjct: 84  NTTLRPGTNITLIADVSVKNPNVASFKYSNTTTTIYYGGTVVGEARTPPGKAKARRT--- 140

Query: 135 PSRLTLQVDEVASNLSA---LIRDVLDGELVMETHTRIPGRVNLLGIFKKHIVATSECQF 191
             R+ + VD +   + +   L+ D+  G L M ++TRI G+V +L I KKH+V    C  
Sbjct: 141 -MRMNVTVDIIPDKILSVPGLLTDISSGLLNMNSYTRIGGKVKILKIIKKHVVVKMNCTM 199

Query: 192 TFSVLAFKIQSQKCKNK 208
           T ++ +  IQ QKCK  
Sbjct: 200 TVNITSQAIQGQKCKRH 216

Length = 219

>gnl|CDD|217400 pfam03168, LEA_2, Late embryogenesis abundant protein

 Score = 43.9 bits (104), Expect = 3e-06
 Identities = 22/102 (21%), Positives = 42/102 (41%), Gaps = 7/102 (6%)

Query: 90  ILVKNRNRASFKHGSGKSLLLYRGKQVGV-VDIDPGLIPARGSAVLPSRLTLQVDEVASN 148
           + V+N N     +      L Y G+++       PG +PA G+  L   +T+ +D++A  
Sbjct: 2   LRVRNPNSFPLPYDGLSYDLSYNGQELASGTSPQPGTVPAGGTTTLEVPVTVSLDDLARL 61

Query: 149 LSALIRDVLDGELVMETHTRIPGRVNLLGIFKKHIVATSECQ 190
           L  L+       + +E    + GR+ + G  K         +
Sbjct: 62  LKDLLA------VGLELPYTLRGRLKVGGPVKGSRTVPLSKE 97

Different types of LEA proteins are expressed at different stages of late embryogenesis in higher plant seed embryos and under conditions of dehydration stress. The function of these proteins is unknown. This family represents a group of LEA proteins that appear to be distinct from those in pfam02987. The family DUF1511, pfam07427, has now been merged into this family. Length = 98

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	211
PLN03160	219	uncharacterized protein; Provisional	100.0
PF03168	101	LEA_2: Late embryogenesis abundant protein; InterP	99.55
smart00769	100	WHy Water Stress and Hypersensitive response.	98.94
PF07092	238	DUF1356: Protein of unknown function (DUF1356); In	98.58
COG5608	161	LEA14-like dessication related protein [Defense me	97.97
PF12751	387	Vac7: Vacuolar segregation subunit 7; InterPro: IP	97.7
PLN03160	219	uncharacterized protein; Provisional	94.7
PF06072	60	Herpes_US9: Alphaherpesvirus tegument protein US9;	91.07
PF14927	140	Neurensin: Neurensin	90.76
PRK05529	255	cell division protein FtsQ; Provisional	89.5
PRK10893	192	lipopolysaccharide exporter periplasmic protein; P	83.93
TIGR02588	122	conserved hypothetical protein TIGR02588. The func	83.6
COG1580	159	FliL Flagellar basal body-associated protein [Cell	82.34
PF11906	149	DUF3426: Protein of unknown function (DUF3426); In	82.25
PF11395	43	DUF2873: Protein of unknown function (DUF2873); In	81.69

>PLN03160 uncharacterized protein; Provisional

Probab=100.00  E-value=1.3e-47  Score=317.01  Aligned_cols=202  Identities=31%  Similarity=0.491  Sum_probs=180.4

Q ss_pred             Ccchhh-hhhhhcccCCcceeeehhhHHHHHHHHHHHHHhheeEEeeeCCCeEEEEEEEEeeeecccCCCCcceeEeEEE
Q 028279            8 TEHNEE-QVLLLRRRRRRCCLIATGVAILLLLAFFIIILILALTVFKTKQPITELQSAKIDGIAPRVTFPAVDIQLNLTL   86 (211)
Q Consensus         8 ~~~~~~-~~~~~~~~~~r~c~~c~~~~~~~lv~l~~v~~~~~~lv~rP~~P~~~v~s~~v~~f~~~~~~p~~~~~ln~~~   86 (211)
                      +++||| ++++++++++|+|.+||+|++++++++++++++++|++||||+|+|+++++++++|+++.+ +..+..+|+++
T Consensus        17 ~~~d~~~~~~~~~~~~r~~~~~c~~~~~a~~l~l~~v~~~l~~~vfrPk~P~~~v~~v~l~~~~~~~~-~~~~~~~n~tl   95 (219)
T PLN03160         17 LRSDEEEATNHLKKTRRRNCIKCCGCITATLLILATTILVLVFTVFRVKDPVIKMNGVTVTKLELINN-TTLRPGTNITL   95 (219)
T ss_pred             ccCchhhcCcchhccccccceEEHHHHHHHHHHHHHHHHheeeEEEEccCCeEEEEEEEEeeeeeccC-CCCceeEEEEE
Confidence            356666 5566666777788888878777777778888888999999999999999999999998632 23357899999


Q ss_pred             EEEEEEECCCeeeEEEcCcEEEEEECCEEeeeeEcCCCcccCCceEEEeeEEEEeecccccchHHHHhhhcCCeEEEEEE
Q 028279           87 DLQILVKNRNRASFKHGSGKSLLLYRGKQVGVVDIDPGLIPARGSAVLPSRLTLQVDEVASNLSALIRDVLDGELVMETH  166 (211)
Q Consensus        87 ~~~v~v~NPN~~~i~y~~~~~~v~Y~g~~lg~~~~p~f~q~~~~t~~~~~~~~~~~~~~~~~~~~l~~d~~~g~v~l~~~  166 (211)
                      +++++++|||+++|+|++++++++|+|+.+|++.+|+|+|++++++.+++++.+.+.++.++ ++|.+|.++|.++|+++
T Consensus        96 ~~~v~v~NPN~~~~~Y~~~~~~v~Y~g~~vG~a~~p~g~~~ar~T~~l~~tv~~~~~~~~~~-~~L~~D~~~G~v~l~~~  174 (219)
T PLN03160         96 IADVSVKNPNVASFKYSNTTTTIYYGGTVVGEARTPPGKAKARRTMRMNVTVDIIPDKILSV-PGLLTDISSGLLNMNSY  174 (219)
T ss_pred             EEEEEEECCCceeEEEcCeEEEEEECCEEEEEEEcCCcccCCCCeEEEEEEEEEEeceeccc-hhHHHHhhCCeEEEEEE
Confidence            99999999999999999999999999999999999999999999999999988888776654 68999999999999999


Q ss_pred             EEEEEEEEEeeEEEeeEEEEEEEEEEEecccceEEeccccccccC
Q 028279          167 TRIPGRVNLLGIFKKHIVATSECQFTFSVLAFKIQSQKCKNKARF  211 (211)
Q Consensus       167 ~~v~~rv~v~~~~~~~~~~~v~C~~~v~~~~~~~~~~~C~~k~~~  211 (211)
                      ++++||++++++++++++++++|++.|+..+..+++++|+.|++|
T Consensus       175 ~~v~gkVkv~~i~k~~v~~~v~C~v~V~~~~~~i~~~~C~~~~~~  219 (219)
T PLN03160        175 TRIGGKVKILKIIKKHVVVKMNCTMTVNITSQAIQGQKCKRHVDL  219 (219)
T ss_pred             EEEEEEEEEEEEEEEEEEEEEEeEEEEECCCCEEeccEecccccC
Confidence            999999999999999999999999999999999999999999886

>PF03168 LEA_2: Late embryogenesis abundant protein; InterPro: IPR004864 Different types of LEA proteins are expressed at different stages of late embryogenesis in higher plant seed embryos and under conditions of dehydration stress [, ]

Probab=99.55  E-value=3.5e-14  Score=102.75  Aligned_cols=97  Identities=24%  Similarity=0.364  Sum_probs=73.4

Q ss_pred             EEEEECCCeeeEEEcCcEEEEEECCEEee-eeEcCCCcccCCceEEEeeEEEEeecccccchHHHHhhhcCCeEEEEEEE
Q 028279           89 QILVKNRNRASFKHGSGKSLLLYRGKQVG-VVDIDPGLIPARGSAVLPSRLTLQVDEVASNLSALIRDVLDGELVMETHT  167 (211)
Q Consensus        89 ~v~v~NPN~~~i~y~~~~~~v~Y~g~~lg-~~~~p~f~q~~~~t~~~~~~~~~~~~~~~~~~~~l~~d~~~g~v~l~~~~  167 (211)
                      +++++|||.++++|++.+++++|+|..+| ....++|+|++++++.+.+++.++...+   ...+.++. +|..++++..
T Consensus         1 ~l~v~NPN~~~i~~~~~~~~v~~~g~~v~~~~~~~~~~i~~~~~~~v~~~v~~~~~~l---~~~l~~~~-~~~~~~~v~~   76 (101)
T PF03168_consen    1 TLSVRNPNSFGIRYDSIEYDVYYNGQRVGTGGSLPPFTIPARSSTTVPVPVSVDYSDL---PRLLKDLL-AGRVPFDVTY   76 (101)
T ss_dssp             EEEEEESSSS-EEEEEEEEEEEESSSEEEEEEECE-EEESSSCEEEEEEEEEEEHHHH---HHHHHHHH-HTTSCEEEEE
T ss_pred             CEEEECCCceeEEEeCEEEEEEECCEEEECccccCCeEECCCCcEEEEEEEEEcHHHH---HHHHHhhh-ccccceEEEE
Confidence            57999999999999999999999999999 7888999999999999998887776555   23455555 6677778888


Q ss_pred             EEEEEEEEe-eE--EEeeEEEEEEE
Q 028279          168 RIPGRVNLL-GI--FKKHIVATSEC  189 (211)
Q Consensus       168 ~v~~rv~v~-~~--~~~~~~~~v~C  189 (211)
                      ++++++++. +.  .+.++.++..|
T Consensus        77 ~~~g~~~v~~~~~~~~~~v~~~~~~  101 (101)
T PF03168_consen   77 RIRGTFKVLGTPIFGSVRVPVSCEC  101 (101)
T ss_dssp             EEEEEEE-EE-TTTSCEEEEEEEEE
T ss_pred             EEEEEEEEcccceeeeEEEeEEeEC
Confidence            899999953 33  34444444444

The function of these proteins is unknown. ; PDB: 3BUT_A 1XO8_A 1YYC_A.

>smart00769 WHy Water Stress and Hypersensitive response

Probab=98.94  E-value=1.6e-08  Score=73.68  Aligned_cols=85  Identities=24%  Similarity=0.311  Sum_probs=68.3

Q ss_pred             eeEeEEEEEEEEEECCCeeeEEEcCcEEEEEECCEEeeeeEcC-CCcccCCceEEEeeEEEEeecccccchHHHHhhhcC
Q 028279           80 IQLNLTLDLQILVKNRNRASFKHGSGKSLLLYRGKQVGVVDID-PGLIPARGSAVLPSRLTLQVDEVASNLSALIRDVLD  158 (211)
Q Consensus        80 ~~ln~~~~~~v~v~NPN~~~i~y~~~~~~v~Y~g~~lg~~~~p-~f~q~~~~t~~~~~~~~~~~~~~~~~~~~l~~d~~~  158 (211)
                      ..++.++.+.++++|||.+++.|++.+.+++|+|..+|++..+ ++.+|+++++.+.+++++. ..   +...+..++.+
T Consensus        11 ~~~~~~~~l~l~v~NPN~~~l~~~~~~y~l~~~g~~v~~g~~~~~~~ipa~~~~~v~v~~~~~-~~---~~~~~~~~l~~   86 (100)
T smart00769       11 SGLEIEIVLKVKVQNPNPFPIPVNGLSYDLYLNGVELGSGEIPDSGTLPGNGRTVLDVPVTVN-LF---LAEALIWHIAN   86 (100)
T ss_pred             cceEEEEEEEEEEECCCCCccccccEEEEEEECCEEEEEEEcCCCcEECCCCcEEEEEEEEee-hh---HhHHHHHhhcc
Confidence            4567788999999999999999999999999999999999996 7999999999999998873 22   23456677765


Q ss_pred             C-eEEEEEEEE
Q 028279          159 G-ELVMETHTR  168 (211)
Q Consensus       159 g-~v~l~~~~~  168 (211)
                      | .++++++++
T Consensus        87 ~~~~~y~l~g~   97 (100)
T smart00769       87 GEEIPYRLDGK   97 (100)
T ss_pred             CCCccEEEEEE
Confidence            5 355554433

>PF07092 DUF1356: Protein of unknown function (DUF1356); InterPro: IPR009790 This family consists of several hypothetical mammalian proteins of around 250 residues in length

Probab=98.58  E-value=1.3e-05  Score=66.77  Aligned_cols=113  Identities=14%  Similarity=0.106  Sum_probs=74.8

Q ss_pred             cccCCcceeeehhhHHHHHHHHHHHHHhheeEEeeeCCCeEEEEEEEEeeeecccCCCCcceeEeEEEEEEEEEECCCee
Q 028279           19 RRRRRRCCLIATGVAILLLLAFFIIILILALTVFKTKQPITELQSAKIDGIAPRVTFPAVDIQLNLTLDLQILVKNRNRA   98 (211)
Q Consensus        19 ~~~~~r~c~~c~~~~~~~lv~l~~v~~~~~~lv~rP~~P~~~v~s~~v~~f~~~~~~p~~~~~ln~~~~~~v~v~NPN~~   98 (211)
                      +|-+.||.+++..+.  +++.+.+..+++|+|+  ||.-.++-.++......++.+    ...+..++.-.+.+.|||++
T Consensus        67 qRLKPrRTklyV~~s--V~~CLl~~~L~iFFLf--PRsV~v~~~gv~s~~V~f~~~----~~~v~l~itn~lNIsN~NFy  138 (238)
T PF07092_consen   67 QRLKPRRTKLYVFLS--VLLCLLLSGLVIFFLF--PRSVTVSPVGVKSVTVSFNPD----KSTVQLNITNTLNISNPNFY  138 (238)
T ss_pred             cccCCceeEEEeeHH--HHHHHHHHHheEEEEe--CcEEEEecCcEEEEEEEEeCC----CCEEEEEEEEEEEccCCCEE
Confidence            344556655544332  2222333333344444  876655555544444444311    24567788889999999999


Q ss_pred             eEEEcCcEEEEEECCEEeeeeEcCCC-cccCCceEEEeeEEE
Q 028279           99 SFKHGSGKSLLLYRGKQVGVVDIDPG-LIPARGSAVLPSRLT  139 (211)
Q Consensus        99 ~i~y~~~~~~v~Y~g~~lg~~~~p~f-~q~~~~t~~~~~~~~  139 (211)
                      .+.-.+.++++.|....+|.+..... ..+|++.+.+..++.
T Consensus       139 ~V~Vt~~s~qv~~~~~VVG~~~~~~~~~I~Prs~~q~~~tV~  180 (238)
T PF07092_consen  139 PVTVTNLSIQVLYMKTVVGKGKNSNITVIGPRSSKQVNYTVK  180 (238)
T ss_pred             EEEEEeEEEEEEEEEeEEeeeEecceEEecccCCceEEEEee
Confidence            99999999999999999999988754 678888888776554

The function of this family is unknown.

>COG5608 LEA14-like dessication related protein [Defense mechanisms]

Probab=97.97  E-value=0.0013  Score=51.13  Aligned_cols=88  Identities=15%  Similarity=0.202  Sum_probs=67.1

Q ss_pred             EEEEEEEEECCCeeeEEEcCcEEEEEECCEEeeeeEc-CCCcccCCceEEEeeEEEEeecccccchHHHHhhhcCCeE-E
Q 028279           85 TLDLQILVKNRNRASFKHGSGKSLLLYRGKQVGVVDI-DPGLIPARGSAVLPSRLTLQVDEVASNLSALIRDVLDGEL-V  162 (211)
Q Consensus        85 ~~~~~v~v~NPN~~~i~y~~~~~~v~Y~g~~lg~~~~-p~f~q~~~~t~~~~~~~~~~~~~~~~~~~~l~~d~~~g~v-~  162 (211)
                      .+-.++.++|||-+.+-..+.+..++-+|.++|.+.. .++..++++...+++++.++...+.   +.+...+++|+- +
T Consensus        51 EiV~t~KiyNPN~fPipVtgl~y~vymN~Iki~eG~~~k~~~v~p~S~~tvdv~l~~d~~~~k---e~w~~hi~ngErs~  127 (161)
T COG5608          51 EIVGTLKIYNPNPFPIPVTGLQYAVYMNDIKIGEGEILKGTTVPPNSRETVDVPLRLDNSKIK---EWWVTHIENGERST  127 (161)
T ss_pred             EEEEEEEecCCCCcceeeeceEEEEEEcceEeeccccccceEECCCCeEEEEEEEEEehHHHH---HHHHHHhhccCccc
Confidence            5677899999999999999999999999999999986 5699999999999999988765541   235556766643 3


Q ss_pred             EEEEEEEEEEEEEee
Q 028279          163 METHTRIPGRVNLLG  177 (211)
Q Consensus       163 l~~~~~v~~rv~v~~  177 (211)
                      ++.+  +.+.+++++
T Consensus       128 Ir~~--i~~~v~vg~  140 (161)
T COG5608         128 IRVR--IKGVVKVGG  140 (161)
T ss_pred             EEEE--EEEEEEEcc
Confidence            4433  445555544

>PF12751 Vac7: Vacuolar segregation subunit 7; InterPro: IPR024260 Vac7 is localised at the vacuole membrane, a location which is consistent with its involvement in vacuole morphology and inheritance []

Probab=97.70  E-value=0.00013  Score=64.46  Aligned_cols=89  Identities=21%  Similarity=0.288  Sum_probs=51.0

Q ss_pred             cCCcceeeehhhHHHHHHHHHHHHHhheeEEeeeCCCeEEEEEEEEeeeecccCCCCcceeEeEEEEEEEEEECCCeeeE
Q 028279           21 RRRRCCLIATGVAILLLLAFFIIILILALTVFKTKQPITELQSAKIDGIAPRVTFPAVDIQLNLTLDLQILVKNRNRASF  100 (211)
Q Consensus        21 ~~~r~c~~c~~~~~~~lv~l~~v~~~~~~lv~rP~~P~~~v~s~~v~~f~~~~~~p~~~~~ln~~~~~~v~v~NPN~~~i  100 (211)
                      +++..|.++.+|+++.+++|+++.+++ -++|--.+|--.|+=+.+++.-.+        .-.+=|+++|.+.|||.+.|
T Consensus       294 r~r~~~~r~~~c~~~~i~~lL~ig~~~-gFv~AttKpL~~v~v~~I~NVlaS--------~qELmfdl~V~A~NPn~~~V  364 (387)
T PF12751_consen  294 RQRSWFSRFASCIYLSILLLLVIGFAI-GFVFATTKPLTDVQVVSIQNVLAS--------EQELMFDLTVEAFNPNWFTV  364 (387)
T ss_pred             ccccHHhhhhHHHHHHHHHHHHHHHHH-HhhhhcCcccccceEEEeeeeeec--------cceEEEeeEEEEECCCeEEE
Confidence            344455554444333322222222222 234445556444444444543221        12234788999999999999


Q ss_pred             EEcCcEEEEEECCEEeee
Q 028279          101 KHGSGKSLLLYRGKQVGV  118 (211)
Q Consensus       101 ~y~~~~~~v~Y~g~~lg~  118 (211)
                      ..++.+++++-+-..+|.
T Consensus       365 ~I~d~dldIFAKS~yvg~  382 (387)
T PF12751_consen  365 TIDDMDLDIFAKSRYVGT  382 (387)
T ss_pred             EeccceeeeEecCCccCc
Confidence            999999999987666653

Vac7 has been shown to function as an upstream regulator of the Fab1 lipid kinase pathway []. The Fab1 lipid pathway is important for correct regulation of membrane trafficking events.

>PLN03160 uncharacterized protein; Provisional

Probab=94.70  E-value=0.048  Score=45.29  Aligned_cols=116  Identities=11%  Similarity=0.088  Sum_probs=61.1

Q ss_pred             cchhhhhhhhcccCCcceeeehhhHHHHHHHHHHHHHhheeEEeeeCC--CeEEEEEEEEeeeecccCCCCcceeE----
Q 028279            9 EHNEEQVLLLRRRRRRCCLIATGVAILLLLAFFIIILILALTVFKTKQ--PITELQSAKIDGIAPRVTFPAVDIQL----   82 (211)
Q Consensus         9 ~~~~~~~~~~~~~~~r~c~~c~~~~~~~lv~l~~v~~~~~~lv~rP~~--P~~~v~s~~v~~f~~~~~~p~~~~~l----   82 (211)
                      |+..++....+||++.+|..|++.+++++++++++++.+.+-.=.|+-  -.++++++.++.-.. . .+..+.++    
T Consensus        22 ~~~~~~~~~~~r~~~~~c~~~~~a~~l~l~~v~~~l~~~vfrPk~P~~~v~~v~l~~~~~~~~~~-~-~~~~n~tl~~~v   99 (219)
T PLN03160         22 EEATNHLKKTRRRNCIKCCGCITATLLILATTILVLVFTVFRVKDPVIKMNGVTVTKLELINNTT-L-RPGTNITLIADV   99 (219)
T ss_pred             hhcCcchhccccccceEEHHHHHHHHHHHHHHHHheeeEEEEccCCeEEEEEEEEeeeeeccCCC-C-ceeEEEEEEEEE
Confidence            345566666678887777777777666666655555556666677774  566666666542000 0 01111122    


Q ss_pred             ---eEEEEEEEEEECCCeeeEEEcCcEEEEEECCEEeeeeEcCCCcccCCceE
Q 028279           83 ---NLTLDLQILVKNRNRASFKHGSGKSLLLYRGKQVGVVDIDPGLIPARGSA  132 (211)
Q Consensus        83 ---n~~~~~~v~v~NPN~~~i~y~~~~~~v~Y~g~~lg~~~~p~f~q~~~~t~  132 (211)
                         |-+. +.+. +..-...++|++..+.    ...+..+..++..+..-+.+
T Consensus       100 ~v~NPN~-~~~~-Y~~~~~~v~Y~g~~vG----~a~~p~g~~~ar~T~~l~~t  146 (219)
T PLN03160        100 SVKNPNV-ASFK-YSNTTTTIYYGGTVVG----EARTPPGKAKARRTMRMNVT  146 (219)
T ss_pred             EEECCCc-eeEE-EcCeEEEEEECCEEEE----EEEcCCcccCCCCeEEEEEE
Confidence               1112 2223 2323677888776543    23445555555555444444

>PF06072 Herpes_US9: Alphaherpesvirus tegument protein US9; InterPro: IPR009278 This family consists of several US9 and related proteins from the Alphaherpesviruses

Probab=91.07  E-value=0.067  Score=34.92  Aligned_cols=19  Identities=37%  Similarity=0.697  Sum_probs=11.2

Q ss_pred             hcccCCcceeeehhhHHHH
Q 028279           18 LRRRRRRCCLIATGVAILL   36 (211)
Q Consensus        18 ~~~~~~r~c~~c~~~~~~~   36 (211)
                      ..|+|+|+|.++.++++++
T Consensus        24 ~~r~RrRrc~~~v~~v~~~   42 (60)
T PF06072_consen   24 ASRRRRRRCRLAVAIVFAV   42 (60)
T ss_pred             HHHHHHHHHHHHHHHHHHH
Confidence            4455667776666555444

The function of the US9 protein is unknown although in Bovine herpesvirus 5 Us9 is essential for the anterograde spread of the virus from the olfactory mucosa to the bulb [].; GO: 0019033 viral tegument

>PF14927 Neurensin: Neurensin

Probab=90.76  E-value=0.22  Score=38.44  Aligned_cols=25  Identities=28%  Similarity=0.175  Sum_probs=16.7

Q ss_pred             HHHHHHHHHHHHhheeEEeeeCCCeEE
Q 028279           34 ILLLLAFFIIILILALTVFKTKQPITE   60 (211)
Q Consensus        34 ~~~lv~l~~v~~~~~~lv~rP~~P~~~   60 (211)
                      .+++++++++++++.|++  |++++..
T Consensus        51 g~l~Ll~Gi~~l~vgY~v--P~~~e~~   75 (140)
T PF14927_consen   51 GLLLLLLGIVALTVGYLV--PPKIEVF   75 (140)
T ss_pred             HHHHHHHHHHHHHhhccc--CCcceec
Confidence            344556777788888887  7666544

>PRK05529 cell division protein FtsQ; Provisional

Probab=89.50  E-value=0.61  Score=39.58  Aligned_cols=49  Identities=10%  Similarity=-0.023  Sum_probs=28.6

Q ss_pred             CCeEEEEEEEEeeeeccc--------CCCCcceeEeEE--------------EEEEEEEECCCeeeEEEcC
Q 028279           56 QPITELQSAKIDGIAPRV--------TFPAVDIQLNLT--------------LDLQILVKNRNRASFKHGS  104 (211)
Q Consensus        56 ~P~~~v~s~~v~~f~~~~--------~~p~~~~~ln~~--------------~~~~v~v~NPN~~~i~y~~  104 (211)
                      .|.|.++++++++-....        ......+.+..+              =++.++-+.||.+.|+-.+
T Consensus        58 Sp~~~v~~I~V~Gn~~vs~~eI~~~~~~~~g~~l~~vd~~~~~~~l~~~P~V~sa~V~r~~P~tl~I~V~E  128 (255)
T PRK05529         58 SPLLALRSIEVAGNMRVKPQDIVAALRDQFGKPLPLVDPETVRKKLAAFPLIRSYSVESKPPGTIVVRVVE  128 (255)
T ss_pred             CCceEEEEEEEECCccCCHHHHHHHhcccCCCcceeECHHHHHHHHhcCCCEeEEEEEEeCCCEEEEEEEE
Confidence            489999999998754321        000001111111              2567888999977776544

>PRK10893 lipopolysaccharide exporter periplasmic protein; Provisional

Probab=83.93  E-value=19  Score=29.18  Aligned_cols=20  Identities=15%  Similarity=0.194  Sum_probs=16.7

Q ss_pred             eeCCCeEEEEEEEEeeeecc
Q 028279           53 KTKQPITELQSAKIDGIAPR   72 (211)
Q Consensus        53 rP~~P~~~v~s~~v~~f~~~   72 (211)
                      .++.|+|.+++++...|+..
T Consensus        37 ~~~~Pdy~~~~~~~~~yd~~   56 (192)
T PRK10893         37 NNNDPTYQSQHTDTVVYNPE   56 (192)
T ss_pred             CCCCCCEEEeccEEEEECCC
Confidence            46779999999999888764

>TIGR02588 conserved hypothetical protein TIGR02588

Probab=83.60  E-value=4  Score=30.74  Aligned_cols=36  Identities=17%  Similarity=0.231  Sum_probs=20.8

Q ss_pred             HHHHHHHHHHHHH-hheeEEeeeCCCeEEEEEEEEee
Q 028279           33 AILLLLAFFIIIL-ILALTVFKTKQPITELQSAKIDG   68 (211)
Q Consensus        33 ~~~~lv~l~~v~~-~~~~lv~rP~~P~~~v~s~~v~~   68 (211)
                      .+..+++++++.+ +-.|+.-+++.|.+++......+
T Consensus         9 ~Is~~ill~viglv~y~~l~~~~~pp~l~v~~~~~~r   45 (122)
T TIGR02588         9 GISTLILAAMFGLVAYDWLRYSNKAAVLEVAPAEVER   45 (122)
T ss_pred             HHHHHHHHHHHHHHHHHhhccCCCCCeEEEeehheeE
Confidence            3333344443332 23467777888999887766544

The function of this protein is unknown. It is always found as part of a two-gene operon with TIGR02587, a protein that appears to span the membrane seven times. It is found in Nostoc sp. PCC 7120, Agrobacterium tumefaciens, Sinorhizobium meliloti, and Gloeobacter violaceus, so far, all of which are bacterial.

>COG1580 FliL Flagellar basal body-associated protein [Cell motility and secretion]

Probab=82.34  E-value=6.6  Score=30.99  Aligned_cols=26  Identities=8%  Similarity=-0.166  Sum_probs=12.2

Q ss_pred             eeehhhHHHHHHHHHHHHHhheeEEe
Q 028279           27 LIATGVAILLLLAFFIIILILALTVF   52 (211)
Q Consensus        27 ~~c~~~~~~~lv~l~~v~~~~~~lv~   52 (211)
                      ++++.+.+++++++++..+..+|+..
T Consensus        17 ~~~I~liv~ivl~~~a~~~~~~~~~~   42 (159)
T COG1580          17 SLWILLIVLIVLLALAGAGYFFWFGS   42 (159)
T ss_pred             eeehHHHHHHHHHHHHHHHHHHhhhc
Confidence            34444444444444444444566664

>PF11906 DUF3426: Protein of unknown function (DUF3426); InterPro: IPR021834 This family of proteins are functionally uncharacterised

Probab=82.25  E-value=16  Score=27.86  Aligned_cols=53  Identities=19%  Similarity=0.129  Sum_probs=40.1

Q ss_pred             EEEEEEEECCCeeeEEEcCcEEEEE-ECCEEeeeeEc-C----------CCcccCCceEEEeeEE
Q 028279           86 LDLQILVKNRNRASFKHGSGKSLLL-YRGKQVGVVDI-D----------PGLIPARGSAVLPSRL  138 (211)
Q Consensus        86 ~~~~v~v~NPN~~~i~y~~~~~~v~-Y~g~~lg~~~~-p----------~f~q~~~~t~~~~~~~  138 (211)
                      +.++.+++|.......|-..+++++ -+|+.+++-.+ |          .-..+++++..+...+
T Consensus        70 l~v~g~i~N~~~~~~~~P~l~l~L~D~~g~~l~~r~~~P~~yl~~~~~~~~~l~pg~~~~~~~~~  134 (149)
T PF11906_consen   70 LVVSGTIRNRADFPQALPALELSLLDAQGQPLARRVFTPADYLPPGLAAQAGLPPGESVPFRLRL  134 (149)
T ss_pred             EEEEEEEEeCCCCcccCceEEEEEECCCCCEEEEEEEChHHhcccccccccccCCCCeEEEEEEe
Confidence            4678899999999999999999988 67888887776 4          2345666666665444

This protein is found in bacteria. Proteins in this family are typically between 262 to 463 amino acids in length.

>PF11395 DUF2873: Protein of unknown function (DUF2873); InterPro: IPR021532 This entry is represented by the human SARS coronavirus, Orf7b; it is a family of uncharacterised viral proteins

Probab=81.69  E-value=0.53  Score=27.81  Aligned_cols=25  Identities=24%  Similarity=0.378  Sum_probs=16.5

Q ss_pred             hHHHHHHHHHHHHHhheeEEeeeCC
Q 028279           32 VAILLLLAFFIIILILALTVFKTKQ   56 (211)
Q Consensus        32 ~~~~~lv~l~~v~~~~~~lv~rP~~   56 (211)
                      |++++++++.++.++++|+++--++
T Consensus        12 c~l~~llflv~imliif~f~le~qd   36 (43)
T PF11395_consen   12 CFLSFLLFLVIIMLIIFWFSLEIQD   36 (43)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhhhh
Confidence            4455666777777778888765443

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	211
1yyc_A	174	LEA protein, putative late embryogenesis abundant	1e-04
1xo8_A	151	AT1G01470; structural genomics, protein structure	2e-04
1qzv_F	154	Plant photosystem I: subunit PSAF; photosynthesis,	3e-04

>1yyc_A LEA protein, putative late embryogenesis abundant protein; structural genomics, protein structure initiative, CESG; NMR {Arabidopsis thaliana} Length = 174

 Score = 40.4 bits (94), Expect = 1e-04
 Identities = 22/116 (18%), Positives = 40/116 (34%), Gaps = 14/116 (12%)

Query: 71  PRVTFPAVDIQ----LNLTLDLQILVKNRNRASFKHGSGKSLLLYRGKQV--GVVDIDPG 124
           P  T   VD +      +    ++ VKN    S        +L    + +  G +  DPG
Sbjct: 45  PEATVDDVDFKGVTRDGVDYHAKVSVKNPYSQSIPICQISYILKSATRTIASGTIP-DPG 103

Query: 125 LIPARGSAVLPSRLTLQVDEVASNLSALIRD-----VLDGELVMETHTRIPGRVNL 175
            +   G+ VL   + +      S +  +  D      LD  L  +    + G + +
Sbjct: 104 SLVGSGTTVLDVPVKVAYSIAVSLMKDMCTDWDIDYQLDIGLTFD--IPVVGDITI 157

>1xo8_A AT1G01470; structural genomics, protein structure initiative, center for eukaryotic structural genomics, CESG, unknown function; NMR {Arabidopsis thaliana} SCOP: b.1.25.1 Length = 151

 Score = 39.2 bits (91), Expect = 2e-04
 Identities = 18/115 (15%), Positives = 39/115 (33%), Gaps = 12/115 (10%)

Query: 71  PRVTFPAVDIQ----LNLTLDLQILVKNRNRASFKHGSGKSLLLYRGKQVGVVDI-DPGL 125
           P  +   VD++     ++    ++ V N    S             G+++G   I DPG 
Sbjct: 22  PEGSVTDVDLKDVNRDSVEYLAKVSVTNPYSHSIPICEISFTFHSAGREIGKGKIPDPGS 81

Query: 126 IPARGSAVLPSRLTLQVDEVASNLSALIRD-----VLDGELVMETHTRIPGRVNL 175
           + A+    L   + +    + +    +  D      L   L ++    + G   +
Sbjct: 82  LKAKDMTALDIPVVVPYSILFNLARDVGVDWDIDYELQIGLTID--LPVVGEFTI 134

>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant photosynthetic reaction center, peripheral antenna; HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1 Length = 154

 Score = 39.2 bits (90), Expect = 3e-04
 Identities = 10/34 (29%), Positives = 19/34 (55%), Gaps = 6/34 (17%)

Query: 55 KQPITELQSA-KIDGIAPRVTFPAVDIQLNLTLD 87
          KQ + +LQ++ K+   A   + PA+ I    T++
Sbjct: 19 KQALKKLQASLKL--YADD-SAPALAI--KATME 47

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	211
1yyc_A	174	LEA protein, putative late embryogenesis abundant	98.8
1xo8_A	151	AT1G01470; structural genomics, protein structure	98.69
3but_A	136	Uncharacterized protein AF_0446; lipid binding pro	98.39

>1yyc_A LEA protein, putative late embryogenesis abundant protein; structural genomics, protein structure initiative, CESG; NMR {Arabidopsis thaliana}

Probab=98.80  E-value=2.3e-08  Score=78.89  Aligned_cols=102  Identities=15%  Similarity=0.223  Sum_probs=81.1

Q ss_pred             CCCeEEEEEEEEeeeecccCCCCcceeEeEEEEEEEEEECCCeeeEEEcCcEEEEEECCEEeeeeEcCC-CcccCCceEE
Q 028279           55 KQPITELQSAKIDGIAPRVTFPAVDIQLNLTLDLQILVKNRNRASFKHGSGKSLLLYRGKQVGVVDIDP-GLIPARGSAV  133 (211)
Q Consensus        55 ~~P~~~v~s~~v~~f~~~~~~p~~~~~ln~~~~~~v~v~NPN~~~i~y~~~~~~v~Y~g~~lg~~~~p~-f~q~~~~t~~  133 (211)
                      +.|++++.++++.+++..          ..+|.+.++++|||.+.+.+...+.++.-+|..++++..+. +..++++++.
T Consensus        43 ~~PeV~v~~v~~~~~~l~----------~~~~~l~LrV~NPN~~pLpi~gi~Y~L~vnG~~lasG~s~~~~tIpa~g~~~  112 (174)
T 1yyc_A           43 PTPEATVDDVDFKGVTRD----------GVDYHAKVSVKNPYSQSIPICQISYILKSATRTIASGTIPDPGSLVGSGTTV  112 (174)
T ss_dssp             CCCEEEEEEEEEEEECSS----------SEEEEEEEEEEECSSSCCBCCSEEEEEEESSSCEEEEEESCCCBCCSSEEEE
T ss_pred             CCCEEEEEEeEEeccccc----------eEEEEEEEEEECCCCCCccccceEEEEEECCEEEEEEecCCCceECCCCcEE
Confidence            679999999999877653          14568899999999999999999999999999999999985 8999999999


Q ss_pred             EeeEEEEeecccccchHHHHhhhc-CCeEEEEEEEEEE
Q 028279          134 LPSRLTLQVDEVASNLSALIRDVL-DGELVMETHTRIP  170 (211)
Q Consensus       134 ~~~~~~~~~~~~~~~~~~l~~d~~-~g~v~l~~~~~v~  170 (211)
                      +.+++++....+    ..+++|+. .+.++.++++++.
T Consensus       113 v~Vpv~v~~~~l----~~~~~~l~~~~~i~Y~L~g~L~  146 (174)
T 1yyc_A          113 LDVPVKVAYSIA----VSLMKDMCTDWDIDYQLDIGLT  146 (174)
T ss_dssp             EEEEEEESHHHH----HHTCCCCCSSEEECEEEEEEEE
T ss_pred             EEEEEEEEHHHH----HHHHHhcCCCCccceEEEEEEE
Confidence            999988764332    33444553 4577777665544

>1xo8_A AT1G01470; structural genomics, protein structure initiative, center for eukaryotic structural genomics, CESG, unknown function; NMR {Arabidopsis thaliana} SCOP: b.1.25.1

Probab=98.69  E-value=1.6e-08  Score=78.22  Aligned_cols=102  Identities=17%  Similarity=0.203  Sum_probs=80.2

Q ss_pred             CCCeEEEEEEEEeeeecccCCCCcceeEeEEEEEEEEEECCCeeeEEEcCcEEEEEECCEEeeeeEcC-CCcccCCceEE
Q 028279           55 KQPITELQSAKIDGIAPRVTFPAVDIQLNLTLDLQILVKNRNRASFKHGSGKSLLLYRGKQVGVVDID-PGLIPARGSAV  133 (211)
Q Consensus        55 ~~P~~~v~s~~v~~f~~~~~~p~~~~~ln~~~~~~v~v~NPN~~~i~y~~~~~~v~Y~g~~lg~~~~p-~f~q~~~~t~~  133 (211)
                      +.|++++.++++.+++..          ..+|.+.++++|||-+.+.+.+.+.++.-+|.+++++..+ ++..++++++.
T Consensus        20 ~~P~v~v~~v~~~~~~~~----------~~~~~~~l~V~NPN~~~lpi~gi~y~l~vng~~lasG~~~~~~~ipa~g~~~   89 (151)
T 1xo8_A           20 PKPEGSVTDVDLKDVNRD----------SVEYLAKVSVTNPYSHSIPICEISFTFHSAGREIGKGKIPDPGSLKAKDMTA   89 (151)
T ss_dssp             CSCCCBCSEEEECCCTTT----------EECEEEEEEEECSSSSCCCCEEEEEEEESSSSCEEEEEEEECCCCSSSSEEE
T ss_pred             CCCEEEEEEeEEeccCcc----------eeEEEEEEEEECCCCCCcccccEEEEEEECCEEEEEEecCCCcEECCCCcEE
Confidence            579999999998766442          2356889999999999999999999999999999999987 58999999999


Q ss_pred             EeeEEEEeecccccchHHHHhhhc-CCeEEEEEEEEEE
Q 028279          134 LPSRLTLQVDEVASNLSALIRDVL-DGELVMETHTRIP  170 (211)
Q Consensus       134 ~~~~~~~~~~~~~~~~~~l~~d~~-~g~v~l~~~~~v~  170 (211)
                      +.+++++....+    .++++++. .+.++.++++++.
T Consensus        90 v~vpv~v~~~~l----~~~~~~l~~~~~i~Y~l~g~l~  123 (151)
T 1xo8_A           90 LDIPVVVPYSIL----FNLARDVGVDWDIDYELQIGLT  123 (151)
T ss_dssp             EEECCCEEHHHH----HHHHHHHHHHSEEEEEEEEEEE
T ss_pred             EEEEEEEEHHHH----HHHHHhcccCCcccEEEEEEEE
Confidence            998887764333    34445543 4688877665554

>3but_A Uncharacterized protein AF_0446; lipid binding protein, beta barrel, protein structure initia PSI-2; 1.91A {Archaeoglobus fulgidus dsm 4304}

Probab=98.39  E-value=3.9e-06  Score=63.53  Aligned_cols=89  Identities=12%  Similarity=0.104  Sum_probs=66.3

Q ss_pred             EEEEEEEEEECCCeeeEEEcCcEEEEEECCEEeeeeEc-CCCcccCCceEEEeeEEEEeecccccchHHHHhhhcCC-eE
Q 028279           84 LTLDLQILVKNRNRASFKHGSGKSLLLYRGKQVGVVDI-DPGLIPARGSAVLPSRLTLQVDEVASNLSALIRDVLDG-EL  161 (211)
Q Consensus        84 ~~~~~~v~v~NPN~~~i~y~~~~~~v~Y~g~~lg~~~~-p~f~q~~~~t~~~~~~~~~~~~~~~~~~~~l~~d~~~g-~v  161 (211)
                      ..|.+.++++|||.+.+.+...+.+++.+|.++|++.. ..+..++++++.+.+++.++..++...   +.+-+.+| .-
T Consensus        18 t~~~~~l~V~NPN~~~l~i~gl~y~v~lng~~la~G~s~~~~~I~~~g~~~v~v~~~i~~~~l~~~---~~~hi~nge~s   94 (136)
T 3but_A           18 TEIVALAKVRNEDVVPIVVSGYHYTIEMNGVKVADGYENSPVTVKPASATTLKFSLRLNNSFLREW---WVTHIANGEKT   94 (136)
T ss_dssp             EEEEEEEEEECCSSSCEEEEEEEEEEEETTEEEEEEEECCCEEECTTCEEEEEEEEEEEHHHHTTH---HHHHHHTTSEE
T ss_pred             EEEEEEEEEeCCCCcceeeeceEEEEEECCEEEEeeeecCceEECCCCcEEEEEEEEEchHHhHHH---HHHHhhcCCce
Confidence            35788999999999999999999999999999999984 579999999999999988886665433   44444444 22


Q ss_pred             EEEEEEEEEEEEEEee
Q 028279          162 VMETHTRIPGRVNLLG  177 (211)
Q Consensus       162 ~l~~~~~v~~rv~v~~  177 (211)
                      +++  +++.+++.+.+
T Consensus        95 ~l~--i~~~~~l~v~g  108 (136)
T 3but_A           95 KIR--VAIKPTIEIGG  108 (136)
T ss_dssp             EEE--EEEEEEEECC-
T ss_pred             EEE--EEEEEEEEeCC
Confidence            233  33444555543

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	211
d1xo8a_	151	b.1.25.1 (A:) Putative dessication related protein	5e-04

>d1xo8a_ b.1.25.1 (A:) Putative dessication related protein LEA14 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 151

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: LEA14-like
family: LEA14-like
domain: Putative dessication related protein LEA14
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

 Score = 36.7 bits (85), Expect = 5e-04
 Identities = 18/115 (15%), Positives = 39/115 (33%), Gaps = 12/115 (10%)

Query: 71  PRVTFPAVDIQ----LNLTLDLQILVKNRNRASFKHGSGKSLLLYRGKQVGVVDI-DPGL 125
           P  +   VD++     ++    ++ V N    S             G+++G   I DPG 
Sbjct: 22  PEGSVTDVDLKDVNRDSVEYLAKVSVTNPYSHSIPICEISFTFHSAGREIGKGKIPDPGS 81

Query: 126 IPARGSAVLPSRLTLQVDEVASNLSALIRD-----VLDGELVMETHTRIPGRVNL 175
           + A+    L   + +    + +    +  D      L   L ++    + G   +
Sbjct: 82  LKAKDMTALDIPVVVPYSILFNLARDVGVDWDIDYELQIGLTID--LPVVGEFTI 134

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	211
d1xo8a_	151	Putative dessication related protein LEA14 {Thale	98.77

>d1xo8a_ b.1.25.1 (A:) Putative dessication related protein LEA14 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: LEA14-like
family: LEA14-like
domain: Putative dessication related protein LEA14
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=98.77  E-value=3.1e-09  Score=80.35  Aligned_cols=104  Identities=17%  Similarity=0.203  Sum_probs=80.0

Q ss_pred             eeCCCeEEEEEEEEeeeecccCCCCcceeEeEEEEEEEEEECCCeeeEEEcCcEEEEEECCEEeeeeEcC-CCcccCCce
Q 028279           53 KTKQPITELQSAKIDGIAPRVTFPAVDIQLNLTLDLQILVKNRNRASFKHGSGKSLLLYRGKQVGVVDID-PGLIPARGS  131 (211)
Q Consensus        53 rP~~P~~~v~s~~v~~f~~~~~~p~~~~~ln~~~~~~v~v~NPN~~~i~y~~~~~~v~Y~g~~lg~~~~p-~f~q~~~~t  131 (211)
                      +-+.|++++.++++.++...          ..++.+.++++|||-+++.....+-+++.+|..++++..+ ++..+++++
T Consensus        18 ~~~kPev~l~~v~i~~v~~~----------~~~l~~~l~V~NPN~~~l~i~~l~y~l~~~g~~ia~G~~~~~~~ipa~~~   87 (151)
T d1xo8a_          18 AIPKPEGSVTDVDLKDVNRD----------SVEYLAKVSVTNPYSHSIPICEISFTFHSAGREIGKGKIPDPGSLKAKDM   87 (151)
T ss_dssp             CCCSCCCBCSEEEECCCTTT----------EECEEEEEEEECSSSSCCCCEEEEEEEESSSSCEEEEEEEECCCCSSSSE
T ss_pred             CCCCCeEEEEEEEeeecccc----------eEEEEEEEEEECCCCCceeeeeEEEEEEECCEEEEeEecCCCcEEcCCCc
Confidence            45689999999999877653          1346889999999999999999999999999999999987 588999999


Q ss_pred             EEEeeEEEEeecccccchHHHHhhhc-CCeEEEEEEEEEE
Q 028279          132 AVLPSRLTLQVDEVASNLSALIRDVL-DGELVMETHTRIP  170 (211)
Q Consensus       132 ~~~~~~~~~~~~~~~~~~~~l~~d~~-~g~v~l~~~~~v~  170 (211)
                      +.+.+++++.-..    ...+.+|+. ++.++.++++++.
T Consensus        88 ~~v~vpv~v~~~~----l~~~~~~i~~~~~i~Y~l~g~l~  123 (151)
T d1xo8a_          88 TALDIPVVVPYSI----LFNLARDVGVDWDIDYELQIGLT  123 (151)
T ss_dssp             EEEEECCCEEHHH----HHHHHHHHHHHSEEEEEEEEEEE
T ss_pred             EEEEEEEEEEHHH----HHHHHHhhccCCCccEEEEEEEE
Confidence            9999888765332    344555553 4566666544333