Citrus Sinensis ID: 028299

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-
Protein Sequence
METLSSSATIVSPSSSPLTIFSIKSKNSPARLVRFPAPSKKNGNDSDLQSNSKETSIVPLFGNQTLSKDEAMGLVLSAASVRGWTTGSGMEGPSVPAGAEEGSSTEKVSTFPWSLFTKSPRRRMRVAFTCNVCGQRTTRAINPHAYTDGTVFVQCCGCNVFHKLVDNLNLFHEMKCYVNPSFNYRDAKWDVGFKLFDMDDDDDDGNNVFRI
Secondary Structure (PSIPRED)
cccccccccccccccccccccccccccccccEEEcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEEEEccccccccccccccccccccEEEEEcccccccEEEEccccccccccccccccccccccccccccccccccccccccccEEEc
Secondary Structure Prediction (SSPRO)
ccHHHHHccccccccccccccccccccccccEEEEcccccccccccccccccccccccccccccccccHHHccEEEEccccccccccccccccccccccccccccccccccccccccccccccEEEEEEEccccccccEEEcHHHHcccEEEEEccccccHHEEHHcccccHcccccccccHcccccccccccEEEEccccccccccEccc
Coil and Loop (DISEMBL)
metlsssativspssspltifsiksknsparlvrfpapskkngndsdlqsnsketsivplfgnqtlskdEAMGLVLSAASvrgwttgsgmegpsvpagaeegsstekvstfpwslftksprrrmrVAFTcnvcgqrttrainphaytdgtvfvqccgcnvfhkLVDNLNLFHEMkcyvnpsfnyrdakwdvgfklfdmddddddgnnvfri
Flexible Loop (DISEMBL)
metlsssativspssspltifsiksknsparlvrfpapskkngndsdlqsnsKETSIVPLFGNQTLSKDEAMGLVLSAASVRGWTTGSGMEGPSVPAGaeegsstekvstfpwslftksprrrmRVAFTCNVCGQRTTRAINPHAYTDGTVFVQCCGCNVFHKLVDNLNLFHEMKCYVNPSFNYRDAKWDVGFKLFDMDDDDDDGNNVFRI
Low Complexity Region (SEG)
METLsssativspsssPLTIFSIKSKNSPARLVRFPAPSKKNGNDSDLQSNSKETSIVPLFGNQTLSKDEAMGLVLSAASVRGWTTGSGMEGPSVPAGAEEGSSTEKVSTFPWSLFTKSPRRRMRVAFTCNVCGQRTTRAINPHAYTDGTVFVQCCGCNVFHKLVDNLNLFHEMKCYVNPSFNYRDAKWDVGFKLFdmddddddGNNVFRI
Disordered region (IsUnstruct)
***********************************************************************MGLVLSAASVRGW*************************TFPWSLFTKSPRRRMRVAFTCNVCGQRTTRAINPHAYTDGTVFVQCCGCNVFHKLVDNLNLFHEMKCYVNPSFNYRDAKWDVGFKLFDM*************
Disordered Region (DISOPRED)
****************************************************************************************************************************RVAFTCNVCGQRTTRAINPHAYTDGTVFVQCCGCNVFHKLVDNLNLFHEMKCYVNPSFNYR****D*GFKLFDMDDDDDDGNNVFRI
Disordered Region (DISEMBL)
***************SPLTIFSIKSKNSPARLVRFPAPS************SKETSIVPLFGNQTLSKDEAMGLVLSAASVRGWTTG**********************TFPWSLFTKSPRRRMRVAFTCNVCGQRTTRAINPHAYTDGTVFVQCCGCNVFHKLVDNLNLFHEMKCYVNPSFNYRDAKWDVGFKLFDMDDDDDDGNNVFRI
Disordered Region (DISPRO)
***************SPLT**********ARL********************************TLSKDEA***VLS*AS***************************************PRRRMRVAFTCNVCGQRTTRAINPHAYTDGTVFVQCCGCNVFHKLVDNLNLFHEMKCYVNPSFNYRDAKWDVGFKLFDMDDDDDDGNNVFRI
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
METLSSSATIVSPSSSPLTIFSIKSKNSPARLVRFPAPSKKNGNDSDLQSNSKETSIVPLFGNQTLSKDEAMGLVLSAASVRGWTTGSGMEGPSVPAGAEEGSSTEKVSTFPWSLFTKSPRRRMRVAFTCNVCGQRTTRAINPHAYTDGTVFVQCCGCNVFHKLVDNLNLFHEMKCYVNPSFNYRDAKWDVGFKLFDMDDDDDDGNNVFRI
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	211	2.2.26 [Sep-21-2011]
Q9D113	177	DNL-type zinc finger prot	yes	no	0.436	0.519	0.314	7e-08
P42844	174	Mitochondrial protein imp	yes	no	0.331	0.402	0.347	1e-06
A6ZSH0	174	Mitochondrial protein imp	N/A	no	0.331	0.402	0.347	1e-06
B5VQB0	174	Mitochondrial protein imp	N/A	no	0.331	0.402	0.347	1e-06
B3LPE4	174	Mitochondrial protein imp	N/A	no	0.331	0.402	0.347	1e-06
Q0IH40	188	DNL-type zinc finger prot	N/A	no	0.270	0.303	0.368	2e-06
Q5SXM8	178	DNL-type zinc finger prot	yes	no	0.236	0.280	0.4	3e-06
Q09759	175	Uncharacterized protein C	yes	no	0.260	0.314	0.4	1e-05
A1L1P7	183	DNL-type zinc finger prot	yes	no	0.236	0.273	0.38	0.0001

>sp|Q9D113|DNLZ_MOUSE DNL-type zinc finger protein OS=Mus musculus GN=Dnlz PE=2 SV=1

 Score = 57.4 bits (137), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 33/105 (31%), Positives = 49/105 (46%), Gaps = 13/105 (12%)

Query: 77  SAASVRGWTTG--SGMEGPSVPAGAEEGSSTEKVSTFPWSLFTKSPRRRMRVAFTCNVCG 134
           +A  +RGW  G  SG    S   G+   ++  +V    + L            +TC VCG
Sbjct: 35  TAERLRGWAWGWASGWRSSSSAPGSGRAAALGRVEADHYQLV-----------YTCKVCG 83

Query: 135 QRTTRAINPHAYTDGTVFVQCCGCNVFHKLVDNLNLFHEMKCYVN 179
            R+++ I+  AY  G V V C GC   H + DNL+ F ++K   N
Sbjct: 84  TRSSKRISKLAYHQGVVIVTCPGCQNHHIIADNLSWFSDLKGKRN 128

Mus musculus (taxid: 10090)

>sp|P42844|ZIM17_YEAST Mitochondrial protein import protein ZIM17 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=ZIM17 PE=1 SV=2

 Score = 53.5 bits (127), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 25/72 (34%), Positives = 36/72 (50%), Gaps = 2/72 (2%)

Query: 123 RMRVAFTCNVCGQRTTRAINPHAYTDGTVFVQCCGCNVFHKLVDNLNLFHEMKCYVNPSF 182
           +M +AFTC  C  R++  ++  AY  GTV + C  C V H + D+L +FH+    V    
Sbjct: 68  KMMIAFTCKKCNTRSSHTMSKQAYEKGTVLISCPHCKVRHLIADHLKIFHDHHVTVEQLM 127

Query: 183 --NYRDAKWDVG 192
             N      DVG
Sbjct: 128 KANGEQVSQDVG 139

Involved in protein import into mitochondria. Acts as a Hsp70-specific chaperone that prevents self-aggregation of the matrix Hsp70 chaperones SSC1 (mtHSP70) and SSQ1, thereby maintaining their function in mitochondrial protein import and Fe/S protein biosynthesis. May act together with PAM18 as co-chaperone to facilitate recognition and folding of imported proteins by SSC1 in the mitochondrial matrix.

Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (taxid: 559292)

>sp|A6ZSH0|ZIM17_YEAS7 Mitochondrial protein import protein ZIM17 OS=Saccharomyces cerevisiae (strain YJM789) GN=ZIM17 PE=3 SV=2

 Score = 53.5 bits (127), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 25/72 (34%), Positives = 36/72 (50%), Gaps = 2/72 (2%)

Query: 123 RMRVAFTCNVCGQRTTRAINPHAYTDGTVFVQCCGCNVFHKLVDNLNLFHEMKCYVNPSF 182
           +M +AFTC  C  R++  ++  AY  GTV + C  C V H + D+L +FH+    V    
Sbjct: 68  KMMIAFTCKKCNTRSSHTMSKQAYEKGTVLISCPHCKVRHLIADHLKIFHDHHVTVEQLM 127

Query: 183 --NYRDAKWDVG 192
             N      DVG
Sbjct: 128 KANGEQVSQDVG 139

Involved in protein import into mitochondria. Acts as a Hsp70-specific chaperone that prevents self-aggregation of the matrix Hsp70 chaperones SSC1 (mtHSP70) and SSQ1, thereby maintaining their function in mitochondrial protein import and Fe/S protein biosynthesis. May act together with PAM18 as co-chaperone to facilitate recognition and folding of imported proteins by SSC1 in the mitochondrial matrix.

Saccharomyces cerevisiae (strain YJM789) (taxid: 307796)

>sp|B5VQB0|ZIM17_YEAS6 Mitochondrial protein import protein ZIM17 OS=Saccharomyces cerevisiae (strain AWRI1631) GN=ZIM17 PE=3 SV=2

 Score = 53.5 bits (127), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 25/72 (34%), Positives = 36/72 (50%), Gaps = 2/72 (2%)

Query: 123 RMRVAFTCNVCGQRTTRAINPHAYTDGTVFVQCCGCNVFHKLVDNLNLFHEMKCYVNPSF 182
           +M +AFTC  C  R++  ++  AY  GTV + C  C V H + D+L +FH+    V    
Sbjct: 68  KMMIAFTCKKCNTRSSHTMSKQAYEKGTVLISCPHCKVRHLIADHLKIFHDHHVTVEQLM 127

Query: 183 --NYRDAKWDVG 192
             N      DVG
Sbjct: 128 KANGEQVSQDVG 139

Involved in protein import into mitochondria. Acts as a Hsp70-specific chaperone that prevents self-aggregation of the matrix Hsp70 chaperones SSC1 (mtHSP70) and SSQ1, thereby maintaining their function in mitochondrial protein import and Fe/S protein biosynthesis. May act together with PAM18 as co-chaperone to facilitate recognition and folding of imported proteins by SSC1 in the mitochondrial matrix.

Saccharomyces cerevisiae (strain AWRI1631) (taxid: 545124)

>sp|B3LPE4|ZIM17_YEAS1 Mitochondrial protein import protein ZIM17 OS=Saccharomyces cerevisiae (strain RM11-1a) GN=ZIM17 PE=3 SV=2

 Score = 53.5 bits (127), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 25/72 (34%), Positives = 36/72 (50%), Gaps = 2/72 (2%)

Query: 123 RMRVAFTCNVCGQRTTRAINPHAYTDGTVFVQCCGCNVFHKLVDNLNLFHEMKCYVNPSF 182
           +M +AFTC  C  R++  ++  AY  GTV + C  C V H + D+L +FH+    V    
Sbjct: 68  KMMIAFTCKKCNTRSSHTMSKQAYEKGTVLISCPHCKVRHLIADHLKIFHDHHVTVEQLM 127

Query: 183 --NYRDAKWDVG 192
             N      DVG
Sbjct: 128 KANGEQVSQDVG 139

Involved in protein import into mitochondria. Acts as a Hsp70-specific chaperone that prevents self-aggregation of the matrix Hsp70 chaperones SSC1 (mtHSP70) and SSQ1, thereby maintaining their function in mitochondrial protein import and Fe/S protein biosynthesis. May act together with PAM18 as co-chaperone to facilitate recognition and folding of imported proteins by SSC1 in the mitochondrial matrix.

Saccharomyces cerevisiae (strain RM11-1a) (taxid: 285006)

>sp|Q0IH40|DNLZ_XENLA DNL-type zinc finger protein OS=Xenopus laevis GN=dnlz PE=2 SV=1

 Score = 52.4 bits (124), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 21/57 (36%), Positives = 33/57 (57%)

Query: 119 SPRRRMRVAFTCNVCGQRTTRAINPHAYTDGTVFVQCCGCNVFHKLVDNLNLFHEMK 175
           +P    R+ +TC VC  R+++ I+  AY  G V V+C GC   H + DNL  F +++
Sbjct: 77  APSSHYRLIYTCKVCATRSSKTISKVAYHKGVVIVRCPGCENHHIIADNLGWFSDLE 133

Xenopus laevis (taxid: 8355)

>sp|Q5SXM8|DNLZ_HUMAN DNL-type zinc finger protein OS=Homo sapiens GN=DNLZ PE=2 SV=1

 Score = 51.6 bits (122), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 20/50 (40%), Positives = 30/50 (60%)

Query: 125 RVAFTCNVCGQRTTRAINPHAYTDGTVFVQCCGCNVFHKLVDNLNLFHEM 174
           ++ +TC VCG R+++ I+  AY  G V V C GC   H + DNL  F ++
Sbjct: 70  QLVYTCKVCGTRSSKRISKLAYHQGVVIVTCPGCQNHHIIADNLGWFSDL 119

Homo sapiens (taxid: 9606)

>sp|Q09759|YA72_SCHPO Uncharacterized protein C24H6.02c OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPAC24H6.02c PE=4 SV=1

 Score = 49.7 bits (117), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 22/55 (40%), Positives = 30/55 (54%)

Query: 119 SPRRRMRVAFTCNVCGQRTTRAINPHAYTDGTVFVQCCGCNVFHKLVDNLNLFHE 173
            P+    V+FTC VC  R+    +  AY +GTV VQC  C   H + D+L +F E
Sbjct: 71  QPKPTYNVSFTCTVCNTRSNHNFSKQAYHNGTVLVQCPKCKNRHLMADHLKIFSE 125

Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812)

>sp|A1L1P7|DNLZ_DANRE DNL-type zinc finger protein OS=Danio rerio GN=dnlz PE=2 SV=1

 Score = 46.6 bits (109), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 19/50 (38%), Positives = 28/50 (56%)

Query: 126 VAFTCNVCGQRTTRAINPHAYTDGTVFVQCCGCNVFHKLVDNLNLFHEMK 175
           + +TC VC  R+ + I+  AY  G V V C GC   H + DNL  F +++
Sbjct: 83  LVYTCKVCSTRSMKKISKLAYHKGVVIVTCPGCKNHHVIADNLKWFSDLE 132


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.316    0.131    0.397 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 79,621,870
Number of Sequences: 539616
Number of extensions: 3289460
Number of successful extensions: 9484
Number of sequences better than 100.0: 39
Number of HSP's better than 100.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 26
Number of HSP's that attempted gapping in prelim test: 9400
Number of HSP's gapped (non-prelim): 92
length of query: 211
length of database: 191,569,459
effective HSP length: 112
effective length of query: 99
effective length of database: 131,132,467
effective search space: 12982114233
effective search space used: 12982114233
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 59 (27.3 bits)

Danio rerio (taxid: 7955)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	211
255539078	209	conserved hypothetical protein [Ricinus	0.815	0.822	0.849	4e-82
365222930	206	Hop-interacting protein THI120 [Solanum	0.943	0.966	0.733	1e-79
225459770	209	PREDICTED: uncharacterized protein LOC10	0.924	0.933	0.775	8e-79
418731019	206	hypothetical protein [Solanum tuberosum]	0.905	0.927	0.737	4e-75
449454239	216	PREDICTED: uncharacterized protein LOC10	0.990	0.967	0.631	2e-68
224085960	145	predicted protein [Populus trichocarpa]	0.592	0.862	0.968	1e-67
297813009	220	hypothetical protein ARALYDRAFT_489599 [	0.791	0.759	0.751	2e-66
224061947	141	predicted protein [Populus trichocarpa]	0.592	0.886	0.928	5e-64
15240479	212	Zim17-type zinc finger protein [Arabidop	0.819	0.816	0.718	2e-62
21592396	212	unknown [Arabidopsis thaliana]	0.819	0.816	0.713	1e-61

>gi|255539078|ref|XP_002510604.1| conserved hypothetical protein [Ricinus communis] gi|223551305|gb|EEF52791.1| conserved hypothetical protein [Ricinus communis]

 Score =  309 bits (792), Expect = 4e-82,   Method: Compositional matrix adjust.
 Identities = 147/173 (84%), Positives = 157/173 (90%), Gaps = 1/173 (0%)

Query: 24  KSKNSPARLVRFPAPSKKNGNDSDLQSNSKETSIVPLFGNQTLSKDEAMGLVLSAASVRG 83
           K K+SP RL+R    SKK+ NDSDL+S+S ++SIVP F N TLSKD AMGLVLSAASVRG
Sbjct: 24  KRKDSPIRLLRIHTSSKKDENDSDLRSDSNDSSIVPFFNNSTLSKDAAMGLVLSAASVRG 83

Query: 84  WTTGSGMEGPSVPAGAEEGSSTEKVSTFPWSLFTKSPRRRMRVAFTCNVCGQRTTRAINP 143
           WTTGSGMEGPSVPAG + GS+TE VST PWSLFTKSPRRRMRVAFTCN+CGQRTTRAINP
Sbjct: 84  WTTGSGMEGPSVPAGTD-GSNTENVSTLPWSLFTKSPRRRMRVAFTCNICGQRTTRAINP 142

Query: 144 HAYTDGTVFVQCCGCNVFHKLVDNLNLFHEMKCYVNPSFNYRDAKWDVGFKLF 196
           HAYTDGTVFVQCCGCNVFHKLVDNLNLFHEMKCYVNPSFNYRDAKWDVGFKLF
Sbjct: 143 HAYTDGTVFVQCCGCNVFHKLVDNLNLFHEMKCYVNPSFNYRDAKWDVGFKLF 195

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|365222930|gb|AEW69817.1| Hop-interacting protein THI120 [Solanum lycopersicum]

 Score =  301 bits (771), Expect = 1e-79,   Method: Compositional matrix adjust.
 Identities = 151/206 (73%), Positives = 177/206 (85%), Gaps = 7/206 (3%)

Query: 1   METLSSSATIVSPSSSPLTIFSIKSKN-SPARLVRFPAPSKKNGNDSDLQSNSKE-TSIV 58
           METL+SSAT  +PS   L++F+ KSK+ S  ++V+F    K NGN+SDLQS++ + TSIV
Sbjct: 1   METLTSSAT-TTPS---LSVFAPKSKHLSSRKIVKFSVSRKNNGNESDLQSDANDNTSIV 56

Query: 59  PLFGNQTLSKDEAMGLVLSAASVRGWTTGSGMEGPSVPAGAEEGSSTEKVSTFPWSLFTK 118
           P+F N TLSKD AMGLVLSAA+VRGWTTGSGMEGP VPAG++  S+T+++STFPWSLFTK
Sbjct: 57  PIFNNPTLSKDAAMGLVLSAANVRGWTTGSGMEGPPVPAGSDSESNTDQISTFPWSLFTK 116

Query: 119 SPRRRMRVAFTCNVCGQRTTRAINPHAYTDGTVFVQCCGCNVFHKLVDNLNLFHEMKCYV 178
           SPRRRMRVAFTCNVCGQRTTRAINPHAYTDGTVFVQCCGCNVFHKLVDNLNLFHEMKCYV
Sbjct: 117 SPRRRMRVAFTCNVCGQRTTRAINPHAYTDGTVFVQCCGCNVFHKLVDNLNLFHEMKCYV 176

Query: 179 NPSFNYRDAKWDVGFKLFDMDDDDDD 204
           +P FN  +   D+GFK FDMDDD+D+
Sbjct: 177 SPDFN-PNPDNDIGFKYFDMDDDNDE 201

Source: Solanum lycopersicum

Species: Solanum lycopersicum

Genus: Solanum

Family: Solanaceae

Order: Solanales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225459770|ref|XP_002285905.1| PREDICTED: uncharacterized protein LOC100243759 [Vitis vinifera] gi|302141706|emb|CBI18909.3| unnamed protein product [Vitis vinifera]

 Score =  298 bits (763), Expect = 8e-79,   Method: Compositional matrix adjust.
 Identities = 152/196 (77%), Positives = 168/196 (85%), Gaps = 1/196 (0%)

Query: 1   METLSSSATIVSPSSSPLTIFSIKSKNSPARLVRFPAPSKKNGNDSDLQSNSKETSIVPL 60
           ME LSSSATI++ SSS  +IFS + ++SP R +R     K NGNDSD++S S E+S+VP+
Sbjct: 1   MEALSSSATIIAASSSSPSIFSPRKRDSP-RFLRVNVSPKDNGNDSDVRSESDESSLVPI 59

Query: 61  FGNQTLSKDEAMGLVLSAASVRGWTTGSGMEGPSVPAGAEEGSSTEKVSTFPWSLFTKSP 120
             N+TLSKD AMGLVLSAASVRGWTT SGMEGPSVPA AE  SSTE++STFPWSLFTKSP
Sbjct: 60  LTNRTLSKDAAMGLVLSAASVRGWTTDSGMEGPSVPAAAEARSSTERISTFPWSLFTKSP 119

Query: 121 RRRMRVAFTCNVCGQRTTRAINPHAYTDGTVFVQCCGCNVFHKLVDNLNLFHEMKCYVNP 180
           RRRMRVAFTCNVCGQRTTRAINPHAYTDGTVFVQCCGCNVFHKLVDNLNLFHEMKCYVNP
Sbjct: 120 RRRMRVAFTCNVCGQRTTRAINPHAYTDGTVFVQCCGCNVFHKLVDNLNLFHEMKCYVNP 179

Query: 181 SFNYRDAKWDVGFKLF 196
           SFNY D + DVGFK  
Sbjct: 180 SFNYSDPRGDVGFKYL 195

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|418731019|gb|AFX67003.1| hypothetical protein [Solanum tuberosum]

 Score =  286 bits (732), Expect = 4e-75,   Method: Compositional matrix adjust.
 Identities = 146/198 (73%), Positives = 166/198 (83%), Gaps = 7/198 (3%)

Query: 1   METLSSSATIVSPSSSPLTIFSIKSKNSPAR-LVRFPAPSKKNGNDSDLQSNSKE-TSIV 58
           METL+SSAT  +PS   L++F+ KSK+  +R  V+F    K NGN+ DLQS+  E TSIV
Sbjct: 1   METLTSSAT-TTPS---LSVFAPKSKHLSSRKFVKFSVSRKNNGNEPDLQSDGNEGTSIV 56

Query: 59  PLFGNQTLSKDEAMGLVLSAASVRGWTTGSGMEGPSVPAGAEEGSSTEKVSTFPWSLFTK 118
           P+F N TLSKD AMGLVLSAA+VRGWTTGSGMEGP VPAG++  SSTE++STFPWSLFTK
Sbjct: 57  PIFNNPTLSKDAAMGLVLSAANVRGWTTGSGMEGPPVPAGSDSESSTEQISTFPWSLFTK 116

Query: 119 SPRRRMRVAFTCNVCGQRTTRAINPHAYTDGTVFVQCCGCNVFHKLVDNLNLFHEMKCYV 178
           SPRRRMRVAFTCNVCGQRTTRAINPHAYTDGTVFVQCCGCNVFHKLVDNLNLFHEMKCYV
Sbjct: 117 SPRRRMRVAFTCNVCGQRTTRAINPHAYTDGTVFVQCCGCNVFHKLVDNLNLFHEMKCYV 176

Query: 179 NPSFNYRDAKWDVGFKLF 196
           +P FN  ++  D+GFK  
Sbjct: 177 SPDFN-PNSDNDIGFKYL 193

Source: Solanum tuberosum

Species: Solanum tuberosum

Genus: Solanum

Family: Solanaceae

Order: Solanales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449454239|ref|XP_004144863.1| PREDICTED: uncharacterized protein LOC101212325 [Cucumis sativus] gi|449521455|ref|XP_004167745.1| PREDICTED: uncharacterized LOC101212325 [Cucumis sativus]

 Score =  264 bits (675), Expect = 2e-68,   Method: Compositional matrix adjust.
 Identities = 137/217 (63%), Positives = 159/217 (73%), Gaps = 8/217 (3%)

Query: 1   METLSSSATIVSPSSSPLTIFSIKSKNSPARLVRFPAPSKKNGNDSDLQSNSKETSIVPL 60
           ME+L ++++    SSS     S   +N P R  + P  SK N N+SD QS+SK T  +P+
Sbjct: 1   MESLINASSAGIVSSSSSFPISSPIRNLPLRSFQVPHASKGNDNESDSQSDSKNTRNLPI 60

Query: 61  FGNQTLS-----KDEAMGLVLSAASVRGWTTGSGMEGPSVPAGAEEGSSTEKVSTFPWSL 115
              + LS     KD AMG+VLSAA+ RGWTTGSGMEGP  PAG E  S TE VSTFPWSL
Sbjct: 61  LSKRHLSLSPLSKDVAMGMVLSAATGRGWTTGSGMEGPPAPAGMEAKSGTENVSTFPWSL 120

Query: 116 FTKSPRRRMRVAFTCNVCGQRTTRAINPHAYTDGTVFVQCCGCNVFHKLVDNLNLFHEMK 175
           FTKSPRRRM VAFTCN+CGQRTTRAINPHAYTDGTVFVQCCGCN +HKLVDNLNLFHEMK
Sbjct: 121 FTKSPRRRMLVAFTCNICGQRTTRAINPHAYTDGTVFVQCCGCNAYHKLVDNLNLFHEMK 180

Query: 176 CYVNPSFNYRDAKW-DVGFKLFDMDDDDDDGNNVFRI 211
           CY+NPSFNY    W DV FK  D+++D +D  +VF I
Sbjct: 181 CYINPSFNYGSNGWGDVNFKYLDVEEDGND--DVFPI 215

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224085960|ref|XP_002307755.1| predicted protein [Populus trichocarpa] gi|222857204|gb|EEE94751.1| predicted protein [Populus trichocarpa]

 Score =  261 bits (666), Expect = 1e-67,   Method: Compositional matrix adjust.
 Identities = 121/125 (96%), Positives = 123/125 (98%)

Query: 72  MGLVLSAASVRGWTTGSGMEGPSVPAGAEEGSSTEKVSTFPWSLFTKSPRRRMRVAFTCN 131
           MGLVLSAASVRGWTTGSGMEGPSVPAGAE+GS+TEKVST PWSLFTKSPRRRMRVAFTCN
Sbjct: 1   MGLVLSAASVRGWTTGSGMEGPSVPAGAEDGSNTEKVSTLPWSLFTKSPRRRMRVAFTCN 60

Query: 132 VCGQRTTRAINPHAYTDGTVFVQCCGCNVFHKLVDNLNLFHEMKCYVNPSFNYRDAKWDV 191
           VCGQRTTRAINPHAYTDGTVFVQCCGCNVFHKLVDNLNLFHEMKCYVNPSFNYRDAKWD 
Sbjct: 61  VCGQRTTRAINPHAYTDGTVFVQCCGCNVFHKLVDNLNLFHEMKCYVNPSFNYRDAKWDG 120

Query: 192 GFKLF 196
           GFKLF
Sbjct: 121 GFKLF 125

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297813009|ref|XP_002874388.1| hypothetical protein ARALYDRAFT_489599 [Arabidopsis lyrata subsp. lyrata] gi|297320225|gb|EFH50647.1| hypothetical protein ARALYDRAFT_489599 [Arabidopsis lyrata subsp. lyrata]

 Score =  257 bits (656), Expect = 2e-66,   Method: Compositional matrix adjust.
 Identities = 133/177 (75%), Positives = 146/177 (82%), Gaps = 10/177 (5%)

Query: 24  KSKNSPA-RLVRFPAPSKKNGNDSD-LQSNSKETSIVPLFGNQTLSKDEAMGLVLSAASV 81
           ++ +SP+ R+VR     KK   D D  QS S  +S+VPLF N+TLS DEAMGLVLSAASV
Sbjct: 28  RTDSSPSPRIVRLS--KKKEDKDYDPQQSESNSSSLVPLFRNRTLSNDEAMGLVLSAASV 85

Query: 82  RGWTTGSGMEGPSVPAGAEEGSSTEKVSTFPWSLFTKSPRRRMRVAFTCNVCGQRTTRAI 141
           +GWTTGSGMEGPS+PA  +    TE VSTFPWSLFTKSPRRRMRVAFTCNVCGQRTTRAI
Sbjct: 86  KGWTTGSGMEGPSLPAKPD----TETVSTFPWSLFTKSPRRRMRVAFTCNVCGQRTTRAI 141

Query: 142 NPHAYTDGTVFVQCCGCNVFHKLVDNLNLFHEMKCYV-NPSFNYRDAKWDV-GFKLF 196
           NPHAYTDGTVFVQCCGCNVFHKLVDNLNLFHE+K YV + SFNYRDAKWDV G  LF
Sbjct: 142 NPHAYTDGTVFVQCCGCNVFHKLVDNLNLFHEVKYYVSSSSFNYRDAKWDVSGLNLF 198

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224061947|ref|XP_002300678.1| predicted protein [Populus trichocarpa] gi|222842404|gb|EEE79951.1| predicted protein [Populus trichocarpa]

 Score =  249 bits (636), Expect = 5e-64,   Method: Compositional matrix adjust.
 Identities = 116/125 (92%), Positives = 119/125 (95%)

Query: 72  MGLVLSAASVRGWTTGSGMEGPSVPAGAEEGSSTEKVSTFPWSLFTKSPRRRMRVAFTCN 131
           MGLVLSAASVRGWTTGSGMEGPSV A +E+G +TEKVST PWSLFTKSPRRRMRVAFTCN
Sbjct: 1   MGLVLSAASVRGWTTGSGMEGPSVTAVSEDGFNTEKVSTLPWSLFTKSPRRRMRVAFTCN 60

Query: 132 VCGQRTTRAINPHAYTDGTVFVQCCGCNVFHKLVDNLNLFHEMKCYVNPSFNYRDAKWDV 191
           VCGQRTTRAINPHAYTDGTVFVQCCGCNVFHKLVDNLNLFHEMKCYVNP FNYRDAKWD 
Sbjct: 61  VCGQRTTRAINPHAYTDGTVFVQCCGCNVFHKLVDNLNLFHEMKCYVNPGFNYRDAKWDG 120

Query: 192 GFKLF 196
           GFKLF
Sbjct: 121 GFKLF 125

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|15240479|ref|NP_198080.1| Zim17-type zinc finger protein [Arabidopsis thaliana] gi|2191191|gb|AAB61076.1| A_TM021B04.14 gene product [Arabidopsis thaliana] gi|16649123|gb|AAL24413.1| unknown protein [Arabidopsis thaliana] gi|20148481|gb|AAM10131.1| unknown protein [Arabidopsis thaliana] gi|332006283|gb|AED93666.1| Zim17-type zinc finger protein [Arabidopsis thaliana]

 Score =  244 bits (623), Expect = 2e-62,   Method: Compositional matrix adjust.
 Identities = 133/185 (71%), Positives = 148/185 (80%), Gaps = 12/185 (6%)

Query: 29  PARLVRFPAPSKKNGNDSDLQSNSKETSIVPLFGNQTLSKDEAMGLVLSAASVRGWTTGS 88
           P R+VR    +KK   D D Q +   +S   LF N+TLS DEAMGLVLSAASV+GWTTGS
Sbjct: 34  PPRIVRLS--NKKEDKDYDPQHSESNSS--SLFRNRTLSNDEAMGLVLSAASVKGWTTGS 89

Query: 89  GMEGPSVPAGAEEGSSTEKVSTFPWSLFTKSPRRRMRVAFTCNVCGQRTTRAINPHAYTD 148
           GMEGPS+PA  +    T+ VSTFPWSLFTKSPRRRMRVAFTCNVCGQRTTRAINPHAYTD
Sbjct: 90  GMEGPSLPAKTD----TDTVSTFPWSLFTKSPRRRMRVAFTCNVCGQRTTRAINPHAYTD 145

Query: 149 GTVFVQCCGCNVFHKLVDNLNLFHEMKCYV-NPSFNYRDAKWDV-GFKLFDMDDDDD--D 204
           GTVFVQCCGCNVFHKLVDNLNLFHE+K YV + SF+Y DAKWDV G  LFD +DDD+  D
Sbjct: 146 GTVFVQCCGCNVFHKLVDNLNLFHEVKYYVSSSSFDYTDAKWDVSGLNLFDDEDDDNAGD 205

Query: 205 GNNVF 209
            N+VF
Sbjct: 206 SNDVF 210

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|21592396|gb|AAM64347.1| unknown [Arabidopsis thaliana]

 Score =  241 bits (616), Expect = 1e-61,   Method: Compositional matrix adjust.
 Identities = 132/185 (71%), Positives = 148/185 (80%), Gaps = 12/185 (6%)

Query: 29  PARLVRFPAPSKKNGNDSDLQSNSKETSIVPLFGNQTLSKDEAMGLVLSAASVRGWTTGS 88
           P R+VR    +KK   D D Q +  E++   LF N+ LS DEAMGLVLSAASV+GWTTGS
Sbjct: 34  PPRIVRLS--NKKEDKDYDPQHS--ESNSPSLFRNRILSNDEAMGLVLSAASVKGWTTGS 89

Query: 89  GMEGPSVPAGAEEGSSTEKVSTFPWSLFTKSPRRRMRVAFTCNVCGQRTTRAINPHAYTD 148
           GMEGPS+PA  +    T+ VSTFPWSLFTKSPRRRMRVAFTCNVCGQRTTRAINPHAYTD
Sbjct: 90  GMEGPSLPAKTD----TDTVSTFPWSLFTKSPRRRMRVAFTCNVCGQRTTRAINPHAYTD 145

Query: 149 GTVFVQCCGCNVFHKLVDNLNLFHEMKCYV-NPSFNYRDAKWDV-GFKLFDMDDDDD--D 204
           GTVFVQCCGCNVFHKLVDNLNLFHE+K YV + SF+Y DAKWDV G  LFD +DDD+  D
Sbjct: 146 GTVFVQCCGCNVFHKLVDNLNLFHEVKYYVSSSSFDYTDAKWDVSGLNLFDDEDDDNAGD 205

Query: 205 GNNVF 209
            N+VF
Sbjct: 206 SNDVF 210

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	211
TAIR|locus:2181291	212	AT5G27280 "AT5G27280" [Arabido	0.943	0.938	0.635	1.6e-63
TAIR|locus:2012398	170	AT1G68730 [Arabidopsis thalian	0.383	0.476	0.462	2e-15
SGD|S000005254	174	ZIM17 "Heat shock protein with	0.355	0.431	0.337	2e-08
MGI|MGI:106559	177	Dnlz "DNL-type zinc finger" [M	0.417	0.497	0.316	3.1e-08
FB|FBgn0030679	191	CG8206 [Drosophila melanogaste	0.601	0.664	0.289	3.3e-08
RGD|1308635	173	Dnlz "DNL-type zinc finger" [R	0.407	0.497	0.323	3.9e-08
UNIPROTKB|F1PCL0	171	DNLZ "Uncharacterized protein"	0.293	0.362	0.353	2e-07
UNIPROTKB|E1BGR3	169	LOC100848156 "Uncharacterized	0.350	0.437	0.298	1.9e-06
POMBASE|SPAC24H6.02c	175	SPAC24H6.02c "TIM23 translocas	0.255	0.308	0.407	3.2e-06
CGD|CAL0000169	184	orf19.6917 [Candida albicans (	0.284	0.326	0.415	3.5e-06

TAIR|locus:2181291 AT5G27280 "AT5G27280" [Arabidopsis thaliana (taxid:3702)]

 Score = 648 (233.2 bits), Expect = 1.6e-63, P = 1.6e-63
 Identities = 136/214 (63%), Positives = 152/214 (71%)

Query:     3 TLXXXXXXXXXXXXPLTIFSIKSKNS---PARLVRFPAPSKKNGNDSDLQSNSKETSIVP 59
             +L            PL+IFS K +     P R+VR    +KK   D D Q +   +S   
Sbjct:     5 SLSSAATIISSSSSPLSIFSPKKRTDSSPPPRIVRLS--NKKEDKDYDPQHSESNSS--S 60

Query:    60 LFGNQTLSKDEAMGLVLSAASVRGWTTGSGMEGPSVPAGAEEGSSTEKVSTFPWSLFTKS 119
             LF N+TLS DEAMGLVLSAASV+GWTTGSGMEGPS+PA  +    T+ VSTFPWSLFTKS
Sbjct:    61 LFRNRTLSNDEAMGLVLSAASVKGWTTGSGMEGPSLPAKTD----TDTVSTFPWSLFTKS 116

Query:   120 PRRRMRVAFTCNVCGQRTTRAINPHAYTDGTVFVQCCGCNVFHKLVDNLNLFHEMKCYVN 179
             PRRRMRVAFTCNVCGQRTTRAINPHAYTDGTVFVQCCGCNVFHKLVDNLNLFHE+K YV+
Sbjct:   117 PRRRMRVAFTCNVCGQRTTRAINPHAYTDGTVFVQCCGCNVFHKLVDNLNLFHEVKYYVS 176

Query:   180 PS-FNYRDAKWDV-GFKLFXXXXXXXXG--NNVF 209
              S F+Y DAKWDV G  LF        G  N+VF
Sbjct:   177 SSSFDYTDAKWDVSGLNLFDDEDDDNAGDSNDVF 210

GO:0008150 "biological_process" evidence=ND

GO:0008270 "zinc ion binding" evidence=IEA

GO:0009507 "chloroplast" evidence=ISM

TAIR|locus:2012398 AT1G68730 [Arabidopsis thaliana (taxid:3702)]

 Score = 194 (73.4 bits), Expect = 2.0e-15, P = 2.0e-15
 Identities = 43/93 (46%), Positives = 56/93 (60%)

Query:   100 EEGSSTEKVSTFPWSLFTKSPRRRMRVAFTCNVCGQRTTRAINPHAYTDGTVFVQCCGCN 159
             EE + + +V+    S+  K PRR ++V FTCN CG+RT R IN HAY  G VFVQC GC 
Sbjct:    86 EESNDSAEVA----SIDIKLPRRSLQVEFTCNSCGERTKRLINRHAYEKGLVFVQCAGCL 141

Query:   160 VFHKLVDNLNLFHEMKCYVNPSFNYRDAKWDVG 192
               HKLVDNL L  E        +++R+   D+G
Sbjct:   142 KHHKLVDNLGLIVE--------YDFRETSKDLG 166

GO:0008270 "zinc ion binding" evidence=IEA

GO:0009507 "chloroplast" evidence=ISM

SGD|S000005254 ZIM17 "Heat shock protein with a zinc finger motif" [Saccharomyces cerevisiae (taxid:4932)]

 Score = 128 (50.1 bits), Expect = 2.0e-08, P = 2.0e-08
 Identities = 26/77 (33%), Positives = 38/77 (49%)

Query:   118 KSPRRRMRVAFTCNVCGQRTTRAINPHAYTDGTVFVQCCGCNVFHKLVDNLNLFHEMKCY 177
             K  + +M +AFTC  C  R++  ++  AY  GTV + C  C V H + D+L +FH+    
Sbjct:    63 KVDKPKMMIAFTCKKCNTRSSHTMSKQAYEKGTVLISCPHCKVRHLIADHLKIFHDHHVT 122

Query:   178 VNPSF--NYRDAKWDVG 192
             V      N      DVG
Sbjct:   123 VEQLMKANGEQVSQDVG 139

GO:0005759 "mitochondrial matrix" evidence=IDA

GO:0008270 "zinc ion binding" evidence=IEA

GO:0015031 "protein transport" evidence=IEA

GO:0030150 "protein import into mitochondrial matrix" evidence=IMP

GO:0005739 "mitochondrion" evidence=IEA;IDA;IPI

GO:0050821 "protein stabilization" evidence=IMP

GO:0005743 "mitochondrial inner membrane" evidence=IEA

GO:0006457 "protein folding" evidence=IMP;IPI

GO:0007005 "mitochondrion organization" evidence=IMP

GO:0016020 "membrane" evidence=IEA

GO:0006810 "transport" evidence=IEA

GO:0046872 "metal ion binding" evidence=IEA

GO:0051087 "chaperone binding" evidence=IDA

GO:0006986 "response to unfolded protein" evidence=IMP

MGI|MGI:106559 Dnlz "DNL-type zinc finger" [Mus musculus (taxid:10090)]

 Score = 128 (50.1 bits), Expect = 3.1e-08, P = 3.1e-08
 Identities = 32/101 (31%), Positives = 48/101 (47%)

Query:    77 SAASVRGWTTG--SGMEGPSVPAGAEEGSSTEKVSTFPWSLFTKSPRRRMRVAFTCNVCG 134
             +A  +RGW  G  SG    S   G+   ++  +V    + L            +TC VCG
Sbjct:    35 TAERLRGWAWGWASGWRSSSSAPGSGRAAALGRVEADHYQL-----------VYTCKVCG 83

Query:   135 QRTTRAINPHAYTDGTVFVQCCGCNVFHKLVDNLNLFHEMK 175
              R+++ I+  AY  G V V C GC   H + DNL+ F ++K
Sbjct:    84 TRSSKRISKLAYHQGVVIVTCPGCQNHHIIADNLSWFSDLK 124

GO:0003674 "molecular_function" evidence=ND

GO:0005739 "mitochondrion" evidence=IDA

GO:0008150 "biological_process" evidence=ND

GO:0008270 "zinc ion binding" evidence=IEA

GO:0046872 "metal ion binding" evidence=IEA

FB|FBgn0030679 CG8206 [Drosophila melanogaster (taxid:7227)]

 Score = 132 (51.5 bits), Expect = 3.3e-08, P = 3.3e-08
 Identities = 40/138 (28%), Positives = 64/138 (46%)

Query:    40 KKNGNDSDLQSNSKETSI--VPLFGN--QTL--SKDEAMGLVLSAASVRGWTTGSGMEGP 93
             ++NG ++ L +  ++ ++  VPL  +  Q L  S+   + +  S      +T      G 
Sbjct:    17 RQNGQNAILNATQQQQAVDAVPLTNDAEQHLKSSRPAPLSIPRSILDACHFTAKQFDLGG 76

Query:    94 SVPAGAEEGSSTEKVSTFPWSLFTKSPRRRMRVAFTCNVCGQRTTRAINPHAYTDGTVFV 153
             S       GS    +S      F +  +RRM + + C +C  R T+ I+  AY  G V +
Sbjct:    77 STSGNQANGS----LSPTTLKRFRRM-QRRMELVYRCKLCNTRNTKTISEEAYYSGVVIL 131

Query:   154 QCCGCNVFHKLVDNLNLF 171
             QC GC V H + DNL LF
Sbjct:   132 QCDGCAVDHLIKDNLGLF 149

GO:0008270 "zinc ion binding" evidence=IEA

RGD|1308635 Dnlz "DNL-type zinc finger" [Rattus norvegicus (taxid:10116)]

 Score = 126 (49.4 bits), Expect = 3.9e-08, P = 3.9e-08
 Identities = 32/99 (32%), Positives = 48/99 (48%)

Query:    77 SAASVRGWTTGSGMEGPSVPAGAEEGSSTEKVSTFPWSLFTKSPRRRMRVAFTCNVCGQR 136
             +A  +RGW  G      S P G+E  ++  +V    + L            +TC VCG R
Sbjct:    35 TAKRLRGWAWG-WRSSSSAP-GSEHAAALGRVKADHYQL-----------VYTCKVCGTR 81

Query:   137 TTRAINPHAYTDGTVFVQCCGCNVFHKLVDNLNLFHEMK 175
             +++ I+  AY  G V V C GC   H + DNL+ F ++K
Sbjct:    82 SSKHISKLAYHQGVVIVTCPGCQNHHIIADNLSWFSDLK 120

GO:0005739 "mitochondrion" evidence=IEA;ISO

GO:0008270 "zinc ion binding" evidence=IEA

UNIPROTKB|F1PCL0 DNLZ "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 123 (48.4 bits), Expect = 2.0e-07, P = 2.0e-07
 Identities = 23/65 (35%), Positives = 34/65 (52%)

Query:   113 WSLFTKSPR---RRMRVAFTCNVCGQRTTRAINPHAYTDGTVFVQCCGCNVFHKLVDNLN 169
             W  F+  P       ++ +TC VCG R+++ I+  AY  G V V C GC   H + DNL 
Sbjct:    48 WRCFSSEPAPGAAHYQLVYTCKVCGSRSSKRISKLAYHRGVVIVTCPGCQKHHVIADNLG 107

Query:   170 LFHEM 174
              F ++
Sbjct:   108 WFSDL 112

GO:0005739 "mitochondrion" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

UNIPROTKB|E1BGR3 LOC100848156 "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 118 (46.6 bits), Expect = 1.9e-06, P = 1.9e-06
 Identities = 23/77 (29%), Positives = 38/77 (49%)

Query:   101 EGSSTEKVSTFPWSLFTKSPR---RRMRVAFTCNVCGQRTTRAINPHAYTDGTVFVQCCG 157
             + + T +   + W   +  P       ++ +TC VCG R+++ I+  AY  G V V C G
Sbjct:    34 QAAGTRRAWGWGWRRLSSEPGPGPAHYQLVYTCKVCGTRSSKRISKLAYHQGVVIVTCPG 93

Query:   158 CNVFHKLVDNLNLFHEM 174
             C   H + DNL  F ++
Sbjct:    94 CQNHHIIADNLGWFSDL 110

GO:0005739 "mitochondrion" evidence=IEA

GO:0043565 "sequence-specific DNA binding" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA

POMBASE|SPAC24H6.02c SPAC24H6.02c "TIM23 translocase complex subunit Tim15 (predicted)" [Schizosaccharomyces pombe (taxid:4896)]

 Score = 118 (46.6 bits), Expect = 3.2e-06, P = 3.2e-06
 Identities = 22/54 (40%), Positives = 30/54 (55%)

Query:   120 PRRRMRVAFTCNVCGQRTTRAINPHAYTDGTVFVQCCGCNVFHKLVDNLNLFHE 173
             P+    V+FTC VC  R+    +  AY +GTV VQC  C   H + D+L +F E
Sbjct:    72 PKPTYNVSFTCTVCNTRSNHNFSKQAYHNGTVLVQCPKCKNRHLMADHLKIFSE 125

GO:0005739 "mitochondrion" evidence=IDA

GO:0005744 "mitochondrial inner membrane presequence translocase complex" evidence=NAS

GO:0005759 "mitochondrial matrix" evidence=ISO

GO:0008270 "zinc ion binding" evidence=IEA

GO:0030150 "protein import into mitochondrial matrix" evidence=ISO

GO:0030544 "Hsp70 protein binding" evidence=ISM

GO:0051082 "unfolded protein binding" evidence=NAS

CGD|CAL0000169 orf19.6917 [Candida albicans (taxid:5476)]

 Score = 119 (46.9 bits), Expect = 3.5e-06, P = 3.5e-06
 Identities = 27/65 (41%), Positives = 35/65 (53%)

Query:   122 RRMRVAFTCNVCGQRTTRAINPHAYTDGTVFVQCCGCNVFHKLVDNLNLFHEMKCYVNPS 181
             + + + FTCN+C  R++  I+  AY  GTV VQC  C   H + DNL  F E   Y N  
Sbjct:    69 KELLLQFTCNICNNRSSHNISKQAYDHGTVVVQCPSCKSRHLISDNLG-FME---Y-NKK 123

Query:   182 FNYRD 186
             FN  D
Sbjct:   124 FNLAD 128

GO:0005759 "mitochondrial matrix" evidence=IEA

GO:0051087 "chaperone binding" evidence=IEA

GO:0006457 "protein folding" evidence=IEA

GO:0006986 "response to unfolded protein" evidence=IEA

GO:0050821 "protein stabilization" evidence=IEA

GO:0030150 "protein import into mitochondrial matrix" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	211
pfam05180	66	pfam05180, zf-DNL, DNL zinc finger	9e-26

>gnl|CDD|191217 pfam05180, zf-DNL, DNL zinc finger

 Score = 94.6 bits (236), Expect = 9e-26
 Identities = 25/52 (48%), Positives = 32/52 (61%)

Query: 124 MRVAFTCNVCGQRTTRAINPHAYTDGTVFVQCCGCNVFHKLVDNLNLFHEMK 175
            ++ FTC VCG R+T+ I+  AY  GTV VQC GC   H + DNL  F + K
Sbjct: 1   YQLTFTCKVCGTRSTKTISKQAYEKGTVIVQCPGCKNRHLIADNLGWFGDGK 52

The domain is named after a short C-terminal motif of D(N/H)L. This domain is a novel zinc-finger protein essential for protein import into mitochondria. Length = 66

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	211
KOG3277	165	consensus Uncharacterized conserved protein [Funct	100.0
PF05180	66	zf-DNL: DNL zinc finger; InterPro: IPR007853 Zinc	100.0
PF05207	55	zf-CSL: CSL zinc finger; InterPro: IPR007872 Zinc	93.96
PF01096	39	TFIIS_C: Transcription factor S-II (TFIIS); InterP	89.81
smart00440	40	ZnF_C2C2 C2C2 Zinc finger. Nucleic-acid-binding mo	89.32
TIGR01206	54	lysW lysine biosynthesis protein LysW. This very s	87.77
KOG2923	67	consensus Uncharacterized conserved protein [Funct	85.2
PRK00398	46	rpoP DNA-directed RNA polymerase subunit P; Provis	84.99
TIGR00416	454	sms DNA repair protein RadA. The gene protuct code	83.49
TIGR02098	38	MJ0042_CXXC MJ0042 family finger-like domain. This	81.66
PRK11823	446	DNA repair protein RadA; Provisional	81.4

>KOG3277 consensus Uncharacterized conserved protein [Function unknown]

Probab=100.00  E-value=2.4e-39  Score=269.64  Aligned_cols=114  Identities=36%  Similarity=0.667  Sum_probs=93.4

Q ss_pred             CCCCCCCCCCCCCCCCCCCcccccccccccccCCCcceEEEEEcccCCCccccccCcccccCccEEEEcCCCCccceeee
Q 028299           87 GSGMEGPSVPAGAEEGSSTEKVSTFPWSLFTKSPRRRMRVAFTCNVCGQRTTRAINPHAYTDGTVFVQCCGCNVFHKLVD  166 (211)
Q Consensus        87 ~S~~eGP~~~a~~~~~s~~~~~s~~P~s~~~k~prr~~~l~FTC~~C~tRS~k~iSK~AY~~GvViVqC~GC~n~HLIAD  166 (211)
                      .++|++|+.+++.++    ..+.     -|.+.|+++|+|.|||++|++|++|+|||+||++|||||||+||+|+|||||
T Consensus        48 ~~~s~s~se~~~~~s----~t~l-----~~~~~~kp~m~l~yTCkvCntRs~ktisk~AY~~GvVivqC~gC~~~HliaD  118 (165)
T KOG3277|consen   48 GTGSRSPSEAAKTDS----ATVL-----TFFKVPKPRMQLAYTCKVCNTRSTKTISKQAYEKGVVIVQCPGCKNHHLIAD  118 (165)
T ss_pred             ccCcccccccCCCCc----cccc-----ccccCCCcceEEEEEeeccCCccccccChhhhhCceEEEECCCCccceeehh
Confidence            456677777765332    1111     1357889999999999999999999999999999999999999999999999


Q ss_pred             cccccccCCCC--cchhhhcCCCCccccccccCCCC--CCCCCCCcccC
Q 028299          167 NLNLFHEMKCY--VNPSFNYRDAKWDVGFKLFDMDD--DDDDGNNVFRI  211 (211)
Q Consensus       167 NLgwF~e~~~t--IEdi~k~KGe~v~kg~~~~D~~d--d~d~~~~~fp~  211 (211)
                      |||||+|.+++  |||||++|||+|.+.  +.|+.+  .-++.+++||+
T Consensus       119 nL~~F~d~~~~~nied~l~~kge~v~~~--~g~~~~e~i~~~~~d~f~~  165 (165)
T KOG3277|consen  119 NLGWFHDLKGKRNIEDILAAKGEQVKRN--LGDGEDEDIPEDSKDVFPL  165 (165)
T ss_pred             hhcccccccccccHHHHHHhccceeeee--ccccccccccccccccCCC
Confidence            99999999988  999999999999886  333332  33457899986

>PF05180 zf-DNL: DNL zinc finger; InterPro: IPR007853 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=100.00  E-value=1.2e-37  Score=227.15  Aligned_cols=66  Identities=36%  Similarity=0.688  Sum_probs=52.5

Q ss_pred             eEEEEEcccCCCccccccCcccccCccEEEEcCCCCccceeeecccccccCCCCcchhhhcCCCCc
Q 028299          124 MRVAFTCNVCGQRTTRAINPHAYTDGTVFVQCCGCNVFHKLVDNLNLFHEMKCYVNPSFNYRDAKW  189 (211)
Q Consensus       124 ~~l~FTC~~C~tRS~k~iSK~AY~~GvViVqC~GC~n~HLIADNLgwF~e~~~tIEdi~k~KGe~v  189 (211)
                      |+|+|||++|++|++|+|||+||++||||||||||+|+||||||||||.|.+.+|||||++|||+|
T Consensus         1 ~~l~FTC~~C~~Rs~~~~sk~aY~~GvViv~C~gC~~~HlIaDnLg~f~e~~~~iE~~l~~kge~v   66 (66)
T PF05180_consen    1 YQLTFTCNKCGTRSAKMFSKQAYHKGVVIVQCPGCKNRHLIADNLGWFGENKRNIEDILKEKGEKV   66 (66)
T ss_dssp             EEEEEEETTTTEEEEEEEEHHHHHTSEEEEE-TTS--EEES--SS-SGGGS---HHHHHHHH----
T ss_pred             CeEEEEcCCCCCccceeeCHHHHhCCeEEEECCCCcceeeehhhhcccccCCCCHHHHHHHcCCcC
Confidence            789999999999999999999999999999999999999999999999999999999999999986

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The DNL-type zinc finger is found in Tim15, a zinc finger protein essential for protein import into mitochondria. Mitochondrial functions rely on the correct transport of resident proteins synthesized in the cytosol to mitochondria. Protein import into mitochondria is mediated by membrane protein complexes, protein translocators, in the outer and inner mitochondrial membranes, in cooperation with their assistant proteins in the cytosol, intermembrane space and matrix. Proteins destined to the mitochondrial matrix cross the outer membrane with the aid of the outer membrane translocator, the tOM40 complex, and then the inner membrane with the aid of the inner membrane translocator, the TIM23 complex, and mitochondrial motor and chaperone (MMC) proteins including mitochondrial heat- shock protein 70 (mtHsp70), and translocase in the inner mitochondrial membrane (Tim)15. Tim15 is also known as zinc finger motif (Zim)17 or mtHsp70 escort protein (Hep)1. Tim15 contains a zinc-finger motif (CXXC and CXXC) of ~100 residues, which has been named DNL after a short C-terminal motif of D(N/H)L [, , ]. The DNL-type zinc finger is an L-shaped molecule. The two CXXC motifs are located at the end of the L, and are sandwiched by two- stranded antiparallel beta-sheets. Two short alpha-helices constitute another leg of the L. The outer (convex) face of the L has a large acidic groove, which is lined with five acidic residues, whereas the inner (concave) face of the L has two positively charged residues, next to the CXXC motifs []. This entry represents the DNL-type zinc finger.; GO: 0008270 zinc ion binding; PDB: 2E2Z_A.

>PF05207 zf-CSL: CSL zinc finger; InterPro: IPR007872 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=93.96  E-value=0.03  Score=39.28  Aligned_cols=34  Identities=29%  Similarity=0.761  Sum_probs=29.1

Q ss_pred             EEEEEcccCCCccccccCcccccCccEEEEcCCCCcc
Q 028299          125 RVAFTCNVCGQRTTRAINPHAYTDGTVFVQCCGCNVF  161 (211)
Q Consensus       125 ~l~FTC~~C~tRS~k~iSK~AY~~GvViVqC~GC~n~  161 (211)
                      ...|.| .||..  -.|++.-.+.|.++|+|++|.-+
T Consensus        16 ~~~y~C-RCG~~--f~i~e~~l~~~~~iv~C~sCSL~   49 (55)
T PF05207_consen   16 VYSYPC-RCGGE--FEISEEDLEEGEVIVQCDSCSLW   49 (55)
T ss_dssp             EEEEEE-TTSSE--EEEEHHHHHCT--EEEETTTTEE
T ss_pred             EEEEcC-CCCCE--EEEcchhccCcCEEEECCCCccE
Confidence            589999 99998  88999999999999999999865

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a probable zinc binding motif that contains four cysteines and may chelate zinc, known as the DPH-type after the diphthamide (DPH) biosynthesis protein in which it was first characterised, including the proteins DPH3 and DPH4. This domain is also found associated with N-terminal domain of heat shock protein DnaJ IPR001623 from INTERPRO domain. Diphthamide is a unique post-translationally modified histidine residue found only in translation elongation factor 2 (eEF-2). It is conserved from archaea to humans and serves as the target for diphteria toxin and Pseudomonas exotoxin A. These two toxins catalyse the transfer of ADP-ribose to diphtamide on eEF-2, thus inactivating eEF-2, halting cellular protein synthesis, and causing cell death []. The biosynthesis of diphtamide is dependent on at least five proteins, DPH1 to -5, and a still unidentified amidating enzyme. DPH3 and DPH4 share a conserved region, which encode a putative zinc finger, the DPH-type or CSL-type (after the conserved motif of the final cysteine) zinc finger [, ]. The function of this motif is unknown. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; PDB: 2L6L_A 1WGE_A 2JR7_A 1YOP_A 1YWS_A.

>PF01096 TFIIS_C: Transcription factor S-II (TFIIS); InterPro: IPR001222 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=89.81  E-value=0.22  Score=32.71  Aligned_cols=34  Identities=26%  Similarity=0.592  Sum_probs=24.4

Q ss_pred             EEcccCCCcccccc---CcccccCccEEEEcCCCCcc
Q 028299          128 FTCNVCGQRTTRAI---NPHAYTDGTVFVQCCGCNVF  161 (211)
Q Consensus       128 FTC~~C~tRS~k~i---SK~AY~~GvViVqC~GC~n~  161 (211)
                      ++|..|+++.+..+   .|.|-+.-++|..|..|..+
T Consensus         1 ~~Cp~Cg~~~a~~~~~Q~rsaDE~~T~fy~C~~C~~~   37 (39)
T PF01096_consen    1 IKCPKCGHNEAVFFQIQTRSADEPMTLFYVCCNCGHR   37 (39)
T ss_dssp             S--SSS-SSEEEEEEESSSSSSSSSEEEEEESSSTEE
T ss_pred             CCCcCCCCCeEEEEEeeccCCCCCCeEEEEeCCCCCe
Confidence            46889999888777   55677788999999988753

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a zinc finger motif found in transcription factor IIs (TFIIS). In eukaryotes the initiation of transcription of protein encoding genes by polymerase II (Pol II) is modulated by general and specific transcription factors. The general transcription factors operate through common promoters elements (such as the TATA box). At least eight different proteins associate to form the general transcription factors: TFIIA, -IIB, -IID, -IIE, -IIF, -IIG, -IIH and -IIS []. During mRNA elongation, Pol II can encounter DNA sequences that cause reverse movement of the enzyme. Such backtracking involves extrusion of the RNA 3'-end into the pore, and can lead to transcriptional arrest. Escape from arrest requires cleavage of the extruded RNA with the help of TFIIS, which induces mRNA cleavage by enhancing the intrinsic nuclease activity of RNA polymerase (Pol) II, past template-encoded pause sites []. TFIIS extends from the polymerase surface via a pore to the internal active site. Two essential and invariant acidic residues in a TFIIS loop complement the Pol II active site and could position a metal ion and a water molecule for hydrolytic RNA cleavage. TFIIS also induces extensive structural changes in Pol II that would realign nucleic acids in the active centre. TFIIS is a protein of about 300 amino acids. It contains three regions: a variable N-terminal domain not required for TFIIS activity; a conserved central domain required for Pol II binding; and a conserved C-terminal C4-type zinc finger essential for RNA cleavage. The zinc finger folds in a conformation termed a zinc ribbon [] characterised by a three-stranded antiparallel beta-sheet and two beta-hairpins. A backbone model for Pol II-TFIIS complex was obtained from X-ray analysis. It shows that a beta hairpin protrudes from the zinc finger and complements the pol II active site []. Some viral proteins also contain the TFIIS zinc ribbon C-terminal domain. The Vaccinia virus protein, unlike its eukaryotic homologue, is an integral RNA polymerase subunit rather than a readily separable transcription factor []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0003676 nucleic acid binding, 0008270 zinc ion binding, 0006351 transcription, DNA-dependent; PDB: 3M4O_I 3S14_I 2E2J_I 4A3J_I 3HOZ_I 1TWA_I 3S1Q_I 3S1N_I 1TWG_I 3I4M_I ....

>smart00440 ZnF_C2C2 C2C2 Zinc finger

Probab=89.32  E-value=0.33  Score=32.11  Aligned_cols=34  Identities=29%  Similarity=0.499  Sum_probs=26.4

Q ss_pred             EEcccCCCcccccc---CcccccCccEEEEcCCCCcc
Q 028299          128 FTCNVCGQRTTRAI---NPHAYTDGTVFVQCCGCNVF  161 (211)
Q Consensus       128 FTC~~C~tRS~k~i---SK~AY~~GvViVqC~GC~n~  161 (211)
                      |.|.+|+++.+..+   .|.|-+.=++|..|..|..+
T Consensus         1 ~~Cp~C~~~~a~~~q~Q~RsaDE~mT~fy~C~~C~~~   37 (40)
T smart00440        1 APCPKCGNREATFFQLQTRSADEPMTVFYVCTKCGHR   37 (40)
T ss_pred             CcCCCCCCCeEEEEEEcccCCCCCCeEEEEeCCCCCE
Confidence            47899998888766   45677777899999999753

Nucleic-acid-binding motif in transcriptional elongation factor TFIIS and RNA polymerases.

>TIGR01206 lysW lysine biosynthesis protein LysW

Probab=87.77  E-value=0.42  Score=34.03  Aligned_cols=35  Identities=26%  Similarity=0.619  Sum_probs=24.8

Q ss_pred             EEEEcccCCCccccccCcccccCccEEEEcCCCCccceee
Q 028299          126 VAFTCNVCGQRTTRAINPHAYTDGTVFVQCCGCNVFHKLV  165 (211)
Q Consensus       126 l~FTC~~C~tRS~k~iSK~AY~~GvViVqC~GC~n~HLIA  165 (211)
                      |+|+|..|+..-  .+. ..+. |- ||.|+.|...+-|+
T Consensus         1 ~~~~CP~CG~~i--ev~-~~~~-Ge-iV~Cp~CGaeleVv   35 (54)
T TIGR01206         1 MQFECPDCGAEI--ELE-NPEL-GE-LVICDECGAELEVV   35 (54)
T ss_pred             CccCCCCCCCEE--ecC-CCcc-CC-EEeCCCCCCEEEEE
Confidence            479999999944  232 2233 65 67999999987665

This very small, poorly characterized protein has been shown essential in Thermus thermophilus for an unusual pathway of Lys biosynthesis from aspartate by way of alpha-aminoadipate (AAA) rather than diaminopimelate. It is found also in Deinococcus radiodurans and Pyrococcus horikoshii, which appear to share the AAA pathway.

>KOG2923 consensus Uncharacterized conserved protein [Function unknown]

Probab=85.20  E-value=0.58  Score=35.27  Aligned_cols=31  Identities=26%  Similarity=0.706  Sum_probs=26.7

Q ss_pred             EEEcccCCCccccccCcccccCccEEEEcCCCCc
Q 028299          127 AFTCNVCGQRTTRAINPHAYTDGTVFVQCCGCNV  160 (211)
Q Consensus       127 ~FTC~~C~tRS~k~iSK~AY~~GvViVqC~GC~n  160 (211)
                      .|-| .||-|  -.|++.-.+.|-.+++||+|.-
T Consensus        22 ~yPC-pCGDr--f~It~edL~~ge~Va~CpsCSL   52 (67)
T KOG2923|consen   22 YYPC-PCGDR--FQITLEDLENGEDVARCPSCSL   52 (67)
T ss_pred             EcCC-CCCCe--eeecHHHHhCCCeeecCCCceE
Confidence            3444 79999  7899999999999999999974

>PRK00398 rpoP DNA-directed RNA polymerase subunit P; Provisional

Probab=84.99  E-value=0.82  Score=30.30  Aligned_cols=38  Identities=16%  Similarity=0.344  Sum_probs=27.6

Q ss_pred             EEEEcccCCCccccccCcccccCccEEEEcCCCCccceeeecccc
Q 028299          126 VAFTCNVCGQRTTRAINPHAYTDGTVFVQCCGCNVFHKLVDNLNL  170 (211)
Q Consensus       126 l~FTC~~C~tRS~k~iSK~AY~~GvViVqC~GC~n~HLIADNLgw  170 (211)
                      +.|.|..||....-       ...+..++||.|.+.-++.|+=..
T Consensus         2 ~~y~C~~CG~~~~~-------~~~~~~~~Cp~CG~~~~~~~~~~~   39 (46)
T PRK00398          2 AEYKCARCGREVEL-------DEYGTGVRCPYCGYRILFKERPPV   39 (46)
T ss_pred             CEEECCCCCCEEEE-------CCCCCceECCCCCCeEEEccCCCc
Confidence            68999999986542       233337899999988877776443

>TIGR00416 sms DNA repair protein RadA

Probab=83.49  E-value=0.82  Score=43.17  Aligned_cols=30  Identities=20%  Similarity=0.687  Sum_probs=25.0

Q ss_pred             EEEEcccCCCccccccCcccccCccEEEEcCCCCccceeee
Q 028299          126 VAFTCNVCGQRTTRAINPHAYTDGTVFVQCCGCNVFHKLVD  166 (211)
Q Consensus       126 l~FTC~~C~tRS~k~iSK~AY~~GvViVqC~GC~n~HLIAD  166 (211)
                      ..|.|..||..+.+-           .-|||+|..|--+.-
T Consensus         6 ~~y~C~~Cg~~~~~~-----------~g~Cp~C~~w~t~~~   35 (454)
T TIGR00416         6 SKFVCQHCGADSPKW-----------QGKCPACHAWNTITE   35 (454)
T ss_pred             CeEECCcCCCCCccc-----------cEECcCCCCccccch
Confidence            469999999887764           579999999987765

The gene protuct codes for a probable ATP-dependent protease involved in both DNA repair and degradation of proteins, peptides, glycopeptides. Also known as sms. Residues 11-28 of the SEED alignment contain a putative Zn binding domain. Residues 110-117 of the seed contain a putative ATP binding site both documented in Haemophilus and in Listeria monocytogenes. for E.coli see ( J. BACTERIOL. 178:5045-5048(1996)).

>TIGR02098 MJ0042_CXXC MJ0042 family finger-like domain

Probab=81.66  E-value=1.3  Score=28.00  Aligned_cols=34  Identities=18%  Similarity=0.350  Sum_probs=22.1

Q ss_pred             EEEEcccCCCccccccCcccccCccEEEEcCCCCcc
Q 028299          126 VAFTCNVCGQRTTRAINPHAYTDGTVFVQCCGCNVF  161 (211)
Q Consensus       126 l~FTC~~C~tRS~k~iSK~AY~~GvViVqC~GC~n~  161 (211)
                      |.++|..|++...-.-.+. ...|. -|+|+.|...
T Consensus         1 M~~~CP~C~~~~~v~~~~~-~~~~~-~v~C~~C~~~   34 (38)
T TIGR02098         1 MRIQCPNCKTSFRVVDSQL-GANGG-KVRCGKCGHV   34 (38)
T ss_pred             CEEECCCCCCEEEeCHHHc-CCCCC-EEECCCCCCE
Confidence            4589999998754332222 23443 7999999864

This domain contains a CXXCX(19)CXXC motif suggestive of both zinc fingers and thioredoxin, usually found at the N-terminus of prokaryotic proteins. One partially characterized gene, agmX, is among a large set in Myxococcus whose interruption affects adventurous gliding motility.

>PRK11823 DNA repair protein RadA; Provisional

Probab=81.40  E-value=1.1  Score=42.11  Aligned_cols=31  Identities=26%  Similarity=0.799  Sum_probs=25.5

Q ss_pred             EEEEEcccCCCccccccCcccccCccEEEEcCCCCccceeee
Q 028299          125 RVAFTCNVCGQRTTRAINPHAYTDGTVFVQCCGCNVFHKLVD  166 (211)
Q Consensus       125 ~l~FTC~~C~tRS~k~iSK~AY~~GvViVqC~GC~n~HLIAD  166 (211)
                      ...|.|..||..+.+-           +-|||.|..|--+.-
T Consensus         5 ~~~y~C~~Cg~~~~~~-----------~g~Cp~C~~w~t~~e   35 (446)
T PRK11823          5 KTAYVCQECGAESPKW-----------LGRCPECGAWNTLVE   35 (446)
T ss_pred             CCeEECCcCCCCCccc-----------CeeCcCCCCccceee
Confidence            3569999999887764           479999999987765

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	211
2e2z_A	100	Solution Nmr Structure Of Yeast Tim15, Co-Chaperone		8e-08

>pdb|2E2Z|A Chain A, Solution Nmr Structure Of Yeast Tim15, Co-Chaperone Of Mitochondrial Hsp70 Length = 100

Iteration: 1
 Score = 53.5 bits (127), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 25/72 (34%), Positives = 36/72 (50%), Gaps = 2/72 (2%)
Query: 123 RMRVAFTCNVCGQRTTRAINPHAYTDGTVFVQCCGCNVFHKLVDNLNLFHEMKCYVNPSF 182
           +M +AFTC  C  R++  ++  AY  GTV + C  C V H + D+L +FH+    V    
Sbjct: 9   KMMIAFTCKKCNTRSSHTMSKQAYEKGTVLISCPHCKVRHLIADHLKIFHDHHVTVEQLM 68
Query: 183 --NYRDAKWDVG 192
             N      DVG
Sbjct: 69  KANGEQVSQDVG 80

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	211
2e2z_A	100	TIM15; protein import, zinc finger, protein transp	8e-25

>2e2z_A TIM15; protein import, zinc finger, protein transport, chaperone regulator; NMR {Saccharomyces cerevisiae} Length = 100

 Score = 92.8 bits (230), Expect = 8e-25
 Identities = 24/90 (26%), Positives = 40/90 (44%), Gaps = 3/90 (3%)

Query: 118 KSPRRRMRVAFTCNVCGQRTTRAINPHAYTDGTVFVQCCGCNVFHKLVDNLNLFHEMKCY 177
              + +M +AFTC  C  R++  ++  AY  GTV + C  C V H + D+L +FH+    
Sbjct: 4   MVDKPKMMIAFTCKKCNTRSSHTMSKQAYEKGTVLISCPHCKVRHLIADHLKIFHDHHVT 63

Query: 178 VNPSFNYR---DAKWDVGFKLFDMDDDDDD 204
           V           ++     +  D+ D   D
Sbjct: 64  VEQLMKANGEQVSQDVGDLEFEDIPDSLKD 93

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	211
2e2z_A	100	TIM15; protein import, zinc finger, protein transp	100.0
2jr7_A	89	DPH3 homolog; DESR1, CSL zinc finger, metal bindin	93.56
1yop_A	83	KTI11P; zinc finger, metal binding protein; NMR {S	92.96
1wge_A	83	Hypothetical protein 2610018L09RIK; diphthamide,CS	92.47
2l6l_A	155	DNAJ homolog subfamily C member 24; DPH4, Zn-CSL,	90.45

>2e2z_A TIM15; protein import, zinc finger, protein transport, chaperone regulator; NMR {Saccharomyces cerevisiae}

Probab=100.00  E-value=2.5e-38  Score=245.39  Aligned_cols=75  Identities=28%  Similarity=0.606  Sum_probs=73.2

Q ss_pred             cCCCcceEEEEEcccCCCccccccCcccccCccEEEEcCCCCccceeeecccccccCCCCcchhhhcCCCCcccc
Q 028299          118 KSPRRRMRVAFTCNVCGQRTTRAINPHAYTDGTVFVQCCGCNVFHKLVDNLNLFHEMKCYVNPSFNYRDAKWDVG  192 (211)
Q Consensus       118 k~prr~~~l~FTC~~C~tRS~k~iSK~AY~~GvViVqC~GC~n~HLIADNLgwF~e~~~tIEdi~k~KGe~v~kg  192 (211)
                      |.++++|+|+|||++|++|++|+|||+||++|||||||+||+|+||||||||||.|.+.+||+||++|||.|.++
T Consensus         4 k~~~~~~~l~FTC~~C~tRs~k~iSk~aY~~GvViv~C~gC~n~HlIaDnLgwF~d~~~~IEdil~~kGe~V~~~   78 (100)
T 2e2z_A            4 MVDKPKMMIAFTCKKCNTRSSHTMSKQAYEKGTVLISCPHCKVRHLIADHLKIFHDHHVTVEQLMKANGEQVSQD   78 (100)
T ss_dssp             CSCCCEEEEEEEETTTTEEEEEEEEHHHHHTSEEEEECTTTCCEEESCCSSCSGGGSCCCHHHHHHHHCCCCSSS
T ss_pred             cCCCCcEEEEEEccCCCCcchhhcCHHHhhCCEEEEEcCCCccceEeehhhhhhccCCCCHHHHHHHcCCEeeec
Confidence            678999999999999999999999999999999999999999999999999999999999999999999999885

>2jr7_A DPH3 homolog; DESR1, CSL zinc finger, metal binding protein; NMR {Homo sapiens}

Probab=93.56  E-value=0.023  Score=43.01  Aligned_cols=37  Identities=22%  Similarity=0.596  Sum_probs=32.1

Q ss_pred             EEEEEcccCCCccccccCcccccCccEEEEcCCCCcccee
Q 028299          125 RVAFTCNVCGQRTTRAINPHAYTDGTVFVQCCGCNVFHKL  164 (211)
Q Consensus       125 ~l~FTC~~C~tRS~k~iSK~AY~~GvViVqC~GC~n~HLI  164 (211)
                      ...|.|. ||.+  -.|++...+.|.++|+|++|.-+=.|
T Consensus        21 ~y~ypCr-CGd~--F~IteedLe~ge~iv~C~sCSL~IkV   57 (89)
T 2jr7_A           21 TYFYPCP-CGDN--FSITKEDLENGEDVATCPSCSLIIKV   57 (89)
T ss_dssp             EEEEECT-TSSE--EEEEHHHHHHTCCEEECTTTCCEEEE
T ss_pred             EEEEcCC-CCCE--EEECHHHHhCCCEEEECCCCccEEEE
Confidence            5789997 9988  68999999999999999999976544

>1yop_A KTI11P; zinc finger, metal binding protein; NMR {Saccharomyces cerevisiae} SCOP: g.41.17.1 PDB: 1yws_A

Probab=92.96  E-value=0.038  Score=41.22  Aligned_cols=37  Identities=19%  Similarity=0.525  Sum_probs=31.1

Q ss_pred             EEEEEcccCCCccccccCcccccCccEEEEcCCCCcccee
Q 028299          125 RVAFTCNVCGQRTTRAINPHAYTDGTVFVQCCGCNVFHKL  164 (211)
Q Consensus       125 ~l~FTC~~C~tRS~k~iSK~AY~~GvViVqC~GC~n~HLI  164 (211)
                      ...|.|. ||  ..-.|++.-.+.|-++|+|++|.-+=.|
T Consensus        21 ~y~ypCr-CG--d~F~it~edL~~ge~iv~C~sCSL~I~V   57 (83)
T 1yop_A           21 MFTYPCP-CG--DRFQIYLDDMFEGEKVAVCPSCSLMIDV   57 (83)
T ss_dssp             EEEEEET-TT--EEEEEEHHHHHTTCCEEECSSSCCEEEC
T ss_pred             EEEEeCC-CC--CeEEECHHHHhCCCEEEECCCCccEEEE
Confidence            5789997 99  4558999999999999999999975544

>1wge_A Hypothetical protein 2610018L09RIK; diphthamide,CSL zinc finger, ADP-ribosylating toxin, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.41.17.1

Probab=92.47  E-value=0.051  Score=40.50  Aligned_cols=50  Identities=20%  Similarity=0.426  Sum_probs=37.6

Q ss_pred             ccccccccCCCcceEEEEEcccCCCccccccCcccccCccEEEEcCCCCcccee
Q 028299          111 FPWSLFTKSPRRRMRVAFTCNVCGQRTTRAINPHAYTDGTVFVQCCGCNVFHKL  164 (211)
Q Consensus       111 ~P~s~~~k~prr~~~l~FTC~~C~tRS~k~iSK~AY~~GvViVqC~GC~n~HLI  164 (211)
                      +-+..|.-.+. .-...|.|. ||.+  -.|++...+.|.++|+|++|.-+=.|
T Consensus        15 v~LeDm~~de~-~~~y~y~Cr-CGd~--F~it~edL~~ge~iv~C~sCSL~I~V   64 (83)
T 1wge_A           15 VEIEDFQYDED-SETYFYPCP-CGDN--FAITKEDLENGEDVATCPSCSLIIKV   64 (83)
T ss_dssp             EEGGGSCCBTT-TTEEEECCS-SSSC--EEEEHHHHHTTCCEEECTTTCCEEEE
T ss_pred             EEHHHceEccC-CCEEEEeCC-CCCE--EEECHHHHhCCCEEEECCCCceEEEE
Confidence            34444554432 346889997 9988  68999999999999999999975544

>2l6l_A DNAJ homolog subfamily C member 24; DPH4, Zn-CSL, J-domain, chaperone; NMR {Homo sapiens}

Probab=90.45  E-value=0.12  Score=39.98  Aligned_cols=36  Identities=17%  Similarity=0.581  Sum_probs=27.9

Q ss_pred             EEEEEcccCCCccccccCcccccCccEEEEcCCCCcccee
Q 028299          125 RVAFTCNVCGQRTTRAINPHAYTDGTVFVQCCGCNVFHKL  164 (211)
Q Consensus       125 ~l~FTC~~C~tRS~k~iSK~AY~~GvViVqC~GC~n~HLI  164 (211)
                      ...|.|. ||.+  -.|.+.-.+.| ++|+|++|..+-.+
T Consensus       110 ~f~~~Cr-CG~~--f~i~~~~l~~~-~~v~C~sCSl~~~v  145 (155)
T 2l6l_A          110 SFYLSCR-CGGK--YSVSKDEAEEV-SLISCDTCSLIIEL  145 (155)
T ss_dssp             EEEEECS-SSCE--EEEETTHHHHC-CEEECSSSSCEEEE
T ss_pred             EEEEcCC-CCCe--EEecHHHhCCC-CEEECCCCceEEEE
Confidence            5778996 9976  45776666667 88999999987654

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	211
d1qypa_	57	RBP9 subunit of RNA polymerase II {Archaeon Thermo	91.12
d1ywsa1	82	Diphthamide biosynthesis protein 3, DPH3 {Baker's	89.44
d1wgea1	70	DelGEF-interacting protein 1, DelGIP1 {Mouse (Mus	89.2
d1wjva1	35	Cell growth regulating nucleolar protein LyaR {Mou	88.52
d1tfia_	50	Transcriptional factor SII, C-terminal domain {Hum	83.94

>d1qypa_ g.41.3.1 (A:) RBP9 subunit of RNA polymerase II {Archaeon Thermococcus celer [TaxId: 2264]}

class: Small proteins
fold: Rubredoxin-like
superfamily: Zinc beta-ribbon
family: Transcriptional factor domain
domain: RBP9 subunit of RNA polymerase II
species: Archaeon Thermococcus celer [TaxId: 2264]

Probab=91.12  E-value=0.082  Score=35.20  Aligned_cols=36  Identities=25%  Similarity=0.496  Sum_probs=29.7

Q ss_pred             EEEEcccCCCccccccC---cccccCccEEEEcCCCCcc
Q 028299          126 VAFTCNVCGQRTTRAIN---PHAYTDGTVFVQCCGCNVF  161 (211)
Q Consensus       126 l~FTC~~C~tRS~k~iS---K~AY~~GvViVqC~GC~n~  161 (211)
                      ..++|.+|+++.+..+.   |.|-+--++|..|..|..+
T Consensus        14 ~~~~CpkC~~~~a~~~~~QtRsaDE~~T~fy~C~~Cg~~   52 (57)
T d1qypa_          14 TKITCPKCGNDTAYWWEMQTRAGDEPSTIFYKCTKCGHT   52 (57)
T ss_dssp             EECCCTTTCCSEEEEEEECCSSSSCSSEEEEEESSSCCE
T ss_pred             ccCCCCCCCCCceEEEEeecccccCCCeEEEEeCCCCCc
Confidence            34689999999987665   4569999999999999864

>d1ywsa1 g.41.17.1 (A:1-82) Diphthamide biosynthesis protein 3, DPH3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Small proteins
fold: Rubredoxin-like
superfamily: CSL zinc finger
family: CSL zinc finger
domain: Diphthamide biosynthesis protein 3, DPH3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=89.44  E-value=0.06  Score=38.55  Aligned_cols=39  Identities=21%  Similarity=0.542  Sum_probs=32.5

Q ss_pred             ceEEEEEcccCCCccccccCcccccCccEEEEcCCCCcccee
Q 028299          123 RMRVAFTCNVCGQRTTRAINPHAYTDGTVFVQCCGCNVFHKL  164 (211)
Q Consensus       123 ~~~l~FTC~~C~tRS~k~iSK~AY~~GvViVqC~GC~n~HLI  164 (211)
                      .....|.|. ||-+  -.|++.-.+.|-++++|++|.-+=.|
T Consensus        18 ~~~~~ypCr-CGd~--F~it~~dLe~ge~v~~C~sCSL~IrV   56 (82)
T d1ywsa1          18 NQMFTYPCP-CGDR--FQIYLDDMFEGEKVAVCPSCSLMIDV   56 (82)
T ss_dssp             TTEEEECCS-SSSC--EEEEHHHHHTTCCEEEETTTTEEEEE
T ss_pred             CCEEEeccc-cCCe--EEEcHHHHhCCCeEEeCCCCceEEEE
Confidence            346778888 9975  78899999999999999999976544

>d1wgea1 g.41.17.1 (A:8-77) DelGEF-interacting protein 1, DelGIP1 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: Rubredoxin-like
superfamily: CSL zinc finger
family: CSL zinc finger
domain: DelGEF-interacting protein 1, DelGIP1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=89.20  E-value=0.074  Score=37.07  Aligned_cols=39  Identities=23%  Similarity=0.560  Sum_probs=32.9

Q ss_pred             ceEEEEEcccCCCccccccCcccccCccEEEEcCCCCcccee
Q 028299          123 RMRVAFTCNVCGQRTTRAINPHAYTDGTVFVQCCGCNVFHKL  164 (211)
Q Consensus       123 ~~~l~FTC~~C~tRS~k~iSK~AY~~GvViVqC~GC~n~HLI  164 (211)
                      .....|.|. ||-  .-.|++.-.+.|-++++|++|.-+=.|
T Consensus        19 ~~~~~ypCp-CGd--~F~it~~dLe~ge~V~~C~sCSL~ikV   57 (70)
T d1wgea1          19 SETYFYPCP-CGD--NFAITKEDLENGEDVATCPSCSLIIKV   57 (70)
T ss_dssp             TTEEEECCS-SSS--CEEEEHHHHHTTCCEEECTTTCCEEEE
T ss_pred             CCEEEeCCC-CCC--eEEECHHHHhCCCeEEeCCCCceEEEE
Confidence            456889998 996  478899999999999999999976544

>d1wjva1 g.37.1.2 (A:1-35) Cell growth regulating nucleolar protein LyaR {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: C2HC finger
domain: Cell growth regulating nucleolar protein LyaR
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=88.52  E-value=0.026  Score=35.24  Aligned_cols=23  Identities=35%  Similarity=0.758  Sum_probs=17.0

Q ss_pred             ceEEEEEcccCCCcccc-ccCccc
Q 028299          123 RMRVAFTCNVCGQRTTR-AINPHA  145 (211)
Q Consensus       123 ~~~l~FTC~~C~tRS~k-~iSK~A  145 (211)
                      +.++-||||.||+.-.| .+-||.
T Consensus         6 s~MVfFtCn~CGEs~KK~qVekH~   29 (35)
T d1wjva1           6 SGMVFFTCNACGESVKKIQVEKHV   29 (35)
T ss_dssp             CCCCEEEESSSCCEEETTHHHHHH
T ss_pred             ceEEEEEcchhHHHHhHHHHHHHH
Confidence            57889999999987654 455554

>d1tfia_ g.41.3.1 (A:) Transcriptional factor SII, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Rubredoxin-like
superfamily: Zinc beta-ribbon
family: Transcriptional factor domain
domain: Transcriptional factor SII, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=83.94  E-value=0.25  Score=32.15  Aligned_cols=37  Identities=27%  Similarity=0.433  Sum_probs=30.2

Q ss_pred             EEEEcccCCCcccccc---CcccccCccEEEEcCCCCccc
Q 028299          126 VAFTCNVCGQRTTRAI---NPHAYTDGTVFVQCCGCNVFH  162 (211)
Q Consensus       126 l~FTC~~C~tRS~k~i---SK~AY~~GvViVqC~GC~n~H  162 (211)
                      -.|+|..|+.+.....   .|.|=|--+||++|..|.++-
T Consensus         8 ~~~~C~kC~~~~~~~~~~QtRSADEp~T~F~~C~~Cg~~W   47 (50)
T d1tfia_           8 DLFTCGKCKKKNCTYTQVQTRSADEPMTTFVVCNECGNRW   47 (50)
T ss_dssp             CCSCCSSSCSSCEEEEEECSSSSSSCCEEEEEESSSCCEE
T ss_pred             CCEECCCCCCCccEEEEEEccCCCCCceEEEEccccCCee
Confidence            3589999999988544   566788899999999998763