Citrus Sinensis ID: 028319

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210
Protein Sequence
MLLFSCTEGELASHIAVLSLMMRFLNVLRSLRSQQFKAVAGGLLLKLPFTTIFEYLQMLQMIAVSSRSLGPCSMFYLAAAVSDFYVPWKSMAEHKIQSGSGPLDMQLLQVPKMLSVLRKEWAPMAFCISFKLETDAEILLEKADMARKKYGMHAVVANELLSRKEQVVVVTNNGKIPVYRDKTSSDSDVEKPLTKLLVDRHSVYIKDSNT
Secondary Structure (PSIPRED)
ccccccccccccccccHHHHHHHHHHHHHHHHcccEEEEEccEEEEccccHHHHHHHHHHHHHHHHHHcccccEEEEEccccccccccccHHHccccccccccEEEEEEcccHHHHHHHHcccccEEEEEEEEccHHHHHHHHHHHHHHHcccEEEEEEccccccEEEEEEccccccccccccccHHHHHHHHHHHHHHHHHHHHHcccc
Secondary Structure Prediction (SSPRO)
cEEEEcccccccccccEEEEccHHHHHHHHHHHHHHHHHHcccEEEEEcccHHHHHHHHHHHHHHHHcccccHEEEEEHHHccccccHHHccHcEEEcccccEEEEccccHHHHHHHHHHcccccEEEEEEEcccHHHHHHHHHHHHHHccccEEEEEHHHccccEEEEEEccccEEEEccccccccHHHHHHHHHHHHHHHHHHHcccc
Coil and Loop (DISEMBL)
mllfsctegeLASHIAVLSLMMRFLNVLRSLRSQQFKAVAGGLLLKLPFTTIFEYLQMLQMIAVSsrslgpcsMFYLAAAVSdfyvpwksmaehkiqsgsgpldmqlLQVPKMLSVLRKEWAPMAFCISFKLETDAEILLEKADMARKKYGMHAVVANELLSRKEQVVVVTNngkipvyrdktssdsdvekPLTKLLVDRhsvyikdsnt
Flexible Loop (DISEMBL)
MLLFSCTEGELASHIAVLSLMMRFLNVLRSLRSQQFKAVAGGLLLKLPFTTIFEYLQMLQMIAVSSRSLGPCSMFYLAAAVSDFYVPWKSMAEHKIQSGSGPLDMQLLQVPKMLSVLRKEWAPMAFCISFKLETDAEILLEKADMARKKYGMHAVVanellsrkeqvvvvtnngkipvyrdktssdsdvekpltkllvdrhsvyikdsnt
Low Complexity Region (SEG)
MLLFSCTEGELASHIAVLSLMMRFLNVLRSLRSQQFKAVAGGLLLKLPFTTIFEYLQMLQMIAVSSRSLGPCSMFYLAAAVSDFYVPWKSMAEHKIQSGSGPLDMQLLQVPKMLSVLRKEWAPMAFCISFKLETDAEILLEKADMARKKYGMHAVVANELLSRKEQVVVVTNNGKIPVYRDKTSSDSDVEKPLTKLLVDRHSVYIKDSNT
Disordered region (IsUnstruct)
**LFSCTEGELASHIAVLSLMMRFLNVLRSLRSQQFKAVAGGLLLKLPFTTIFEYLQMLQMIAVSSRSLGPCSMFYLAAAVSDFYVPWKSMAEHKIQSGSGPLDMQLLQVPKMLSVLRKEWAPMAFCISFKLETDAEILLEKADMARKKYGMHAVVANELLSRKEQVVVVTNNGKIPVY****************LLVDR**V*******
Disordered Region (DISOPRED)
MLLFS***************MMRFLNVLRSLRSQQFKAVAGGLLLKLPFTTIFEYLQMLQMIAVSSRSLGPCSMFYLAAAVSDFYVP******************QLLQVPKMLSVLRKEWAPMAFCISFKLETDAEILLEKADMARKKYGMHAVVANELLSRKEQVVVVTNNGK************DVEKPLTKLLVDRHS*YI*****
Disordered Region (DISEMBL)
MLLFSCTEGELASHIAVLSLMMRFLNVLRSLRSQQFKAVAGGLLLKLPFTTIFEYLQMLQMIAVSSRSLGPCSMFYLAAAVSDFYVPWKSMAEHKIQSGSGPLDMQLLQVPKMLSVLRKEWAPMAFCISFKLETDAEILLEKADMARKKYGMHAVVANELLSRKEQVVVVTNNGKIPVYR*********EKPLTKLLVDRHSVYIKDSNT
Disordered Region (DISPRO)
MLLFSCTEGELASHIAVLSLMMRFLNVLRSLRSQQFKAVAGGLLLKLPFTTIFEYLQMLQMIAVSSRSLGPCSMFYLAAAVSDFYVPWKSMAEHKIQSGSGPLDMQLLQVPKMLSVLRKEWAPMAFCISFKLETDAEILLEKADMARKKYGMHAVVANELLSRKEQVVVVTNNGKIPVYRDKTSSDSDVEKPLTKLLVDRHSVYIKD***
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
oooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MLLFSCTEGELASHIAVLSLMMRFLNVLRSLRSQQFKAVAGGLLLKLPFTTIFEYLQMLQMIAVSSRSLGPCSMFYLAAAVSDFYVPWKSMAEHKIQSGSGPLDMQLLQVPKMLSVLRKEWAPMAFCISFKLETDAEILLEKADMARKKYGMHAVVANELLSRKEQVVVVTNNGKIPVYRDKTSSDSDVEKPLTKLLVDRHSVYIKDSNT
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	210	2.2.26 [Sep-21-2011]
Q8GXR5	317	Phosphopantothenate--cyst	yes	no	0.838	0.555	0.693	2e-61
Q9LZM3	309	Phosphopantothenate--cyst	no	no	0.838	0.569	0.676	1e-60
Q9HAB8	311	Phosphopantothenate--cyst	yes	no	0.852	0.575	0.467	3e-37
Q8VDG5	311	Phosphopantothenate--cyst	yes	no	0.852	0.575	0.439	2e-29
Q9USK7	316	Uncharacterized protein C	yes	no	0.614	0.408	0.488	8e-27
P40506	365	Phosphopantothenate--cyst	yes	no	0.785	0.452	0.360	3e-21

>sp|Q8GXR5|PPCS1_ARATH Phosphopantothenate--cysteine ligase 1 OS=Arabidopsis thaliana GN=PPCS1 PE=2 SV=1

 Score =  234 bits (598), Expect = 2e-61,   Method: Compositional matrix adjust.
 Identities = 122/176 (69%), Positives = 145/176 (82%)

Query: 35  QFKAVAGGLLLKLPFTTIFEYLQMLQMIAVSSRSLGPCSMFYLAAAVSDFYVPWKSMAEH 94
           Q  AVA G LLKLPF+TI+EYLQML++IA   + +GPCSMFYLAAAVSDFYVPW SM EH
Sbjct: 142 QQAAVAEGRLLKLPFSTIYEYLQMLRLIATILKDVGPCSMFYLAAAVSDFYVPWLSMTEH 201

Query: 95  KIQSGSGPLDMQLLQVPKMLSVLRKEWAPMAFCISFKLETDAEILLEKADMARKKYGMHA 154
           KI+SGSGPLD++L QVPKMLS+LR  WAP AFCISFKLETD++ILLEKA  A +KY +HA
Sbjct: 202 KIESGSGPLDIRLAQVPKMLSILRSNWAPKAFCISFKLETDSKILLEKATKALQKYKVHA 261

Query: 155 VVANELLSRKEQVVVVTNNGKIPVYRDKTSSDSDVEKPLTKLLVDRHSVYIKDSNT 210
           VVANELL+RKE+VVVV+++G + V RD    +S VE  L +LLVDRHS YIK+S T
Sbjct: 262 VVANELLTRKEEVVVVSSSGNVVVRRDSNKPESIVEDNLIRLLVDRHSTYIKESLT 317

Catalyzes the first step in the biosynthesis of coenzyme A from vitamin B5, where cysteine is conjugated to 4'-phosphopantothenate to form 4-phosphopantothenoylcysteine.
Arabidopsis thaliana (taxid: 3702)
EC: 6EC: .EC: 3EC: .EC: 2EC: .EC: 5

>sp|Q9LZM3|PPCS2_ARATH Phosphopantothenate--cysteine ligase 2 OS=Arabidopsis thaliana GN=PPCS2 PE=2 SV=2

 Score =  232 bits (591), Expect = 1e-60,   Method: Compositional matrix adjust.
 Identities = 119/176 (67%), Positives = 146/176 (82%)

Query: 35  QFKAVAGGLLLKLPFTTIFEYLQMLQMIAVSSRSLGPCSMFYLAAAVSDFYVPWKSMAEH 94
           Q  AVA G LLKLPF+TI+EYLQML++IA + + +GPCSMFYLAAAVSDFYVPWKSM EH
Sbjct: 134 QQTAVAEGSLLKLPFSTIYEYLQMLRLIAEALKDVGPCSMFYLAAAVSDFYVPWKSMTEH 193

Query: 95  KIQSGSGPLDMQLLQVPKMLSVLRKEWAPMAFCISFKLETDAEILLEKADMARKKYGMHA 154
           KI+SGSGPLD++L QVPKMLSVLR  WAP AFCISFKLETD++IL+EKA  A +KY +HA
Sbjct: 194 KIESGSGPLDIRLAQVPKMLSVLRSNWAPKAFCISFKLETDSKILMEKATKALRKYKVHA 253

Query: 155 VVANELLSRKEQVVVVTNNGKIPVYRDKTSSDSDVEKPLTKLLVDRHSVYIKDSNT 210
           VVANEL +RKE+VVVV+++G + V R+    +S VE  L +L+VDRHS YIK+S+ 
Sbjct: 254 VVANELSTRKEEVVVVSSSGNVVVRRECDKPESFVEDNLIRLIVDRHSTYIKESHN 309

Catalyzes the first step in the biosynthesis of coenzyme A from vitamin B5, where cysteine is conjugated to 4'-phosphopantothenate to form 4-phosphopantothenoylcysteine.

Arabidopsis thaliana (taxid: 3702)

EC: 6

EC: .

EC: 3

EC: .

EC: 2

EC: .

EC: 5

>sp|Q9HAB8|PPCS_HUMAN Phosphopantothenate--cysteine ligase OS=Homo sapiens GN=PPCS PE=1 SV=2

 Score =  154 bits (390), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 85/182 (46%), Positives = 114/182 (62%), Gaps = 3/182 (1%)

Query: 30  SLRSQQFKAVAGGLLLKLPFTTIFEYLQMLQMIAVSSRSLGPCSMFYLAAAVSDFYVPWK 89
           +LRS Q +A A G  L + FTT+ +YL +LQ  A +   LGP +MFYLAAAVSDFYVP  
Sbjct: 131 ALRSYQ-EAAAAGTFLAVEFTTLADYLHLLQAAAQALNPLGPSAMFYLAAAVSDFYVPVS 189

Query: 90  SMAEHKIQSGSGPLDMQLLQVPKMLSVLRKEWAPMAFCISFKLETDAEILLEKADMARKK 149
            M EHKIQS  GPL + +  VPK+LS L K+WAP AF ISFKLETD  I++ +A  A + 
Sbjct: 190 EMPEHKIQSSGGPLQITMKMVPKLLSPLVKDWAPKAFIISFKLETDPAIVINRARKALEI 249

Query: 150 YGMHAVVANELLSRKEQVVVVTNNG--KIPVYRDKTSSDSDVEKPLTKLLVDRHSVYIKD 207
           Y    VVAN L SR+  V +VT +   K+ +  ++     ++E+ +   L  RH+ +I D
Sbjct: 250 YQHQVVVANILESRQSFVFIVTKDSETKLLLSEEEIEKGVEIEEKIVDNLQSRHTAFIGD 309

Query: 208 SN 209
            N
Sbjct: 310 RN 311

Catalyzes the first step in the biosynthesis of coenzyme A from vitamin B5, where cysteine is conjugated to 4'-phosphopantothenate to form 4-phosphopantothenoylcysteine.

Homo sapiens (taxid: 9606)

EC: 6

EC: .

EC: 3

EC: .

EC: 2

EC: .

EC: 5

>sp|Q8VDG5|PPCS_MOUSE Phosphopantothenate--cysteine ligase OS=Mus musculus GN=Ppcs PE=2 SV=1

 Score =  129 bits (324), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 80/182 (43%), Positives = 111/182 (60%), Gaps = 3/182 (1%)

Query: 30  SLRSQQFKAVAGGLLLKLPFTTIFEYLQMLQMIAVSSRSLGPCSMFYLAAAVSDFYVPWK 89
           +L+S Q +A A G  L + FTT+ +YL +LQ  A++   LG  +MFYLAAAVSDFY+P  
Sbjct: 131 ALQSYQ-EAAAAGTFLAVEFTTLADYLHLLQAAALALSPLGSSAMFYLAAAVSDFYIPVS 189

Query: 90  SMAEHKIQSGSGPLDMQLLQVPKMLSVLRKEWAPMAFCISFKLETDAEILLEKADMARKK 149
            M EHKI S  GPL + +  VPKMLS L K+WAP AF +SFKLETD +I++ +A  A + 
Sbjct: 190 EMPEHKIHSSGGPLQITMKMVPKMLSPLVKDWAPKAFVVSFKLETDPDIIISRARNALEV 249

Query: 150 YGMHAVVANELLSRKEQVVVVTNNGKIPVYRDKTSSDSD--VEKPLTKLLVDRHSVYIKD 207
           Y    VVAN L S K  V++VT + +  +   +        +E+ +   L  RH+ +I D
Sbjct: 250 YQHQVVVANILESIKSFVIIVTKDSETELLLSEEEVAKGLVIEEKIVDDLRSRHTAFICD 309

Query: 208 SN 209
            N
Sbjct: 310 KN 311

Catalyzes the first step in the biosynthesis of coenzyme A from vitamin B5, where cysteine is conjugated to 4'-phosphopantothenate to form 4-phosphopantothenoylcysteine.

Mus musculus (taxid: 10090)

EC: 6

EC: .

EC: 3

EC: .

EC: 2

EC: .

EC: 5

>sp|Q9USK7|YJ2I_SCHPO Uncharacterized protein C4B3.18 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPCC4B3.18 PE=3 SV=1

 Score =  120 bits (300), Expect = 8e-27,   Method: Compositional matrix adjust.
 Identities = 64/131 (48%), Positives = 89/131 (67%), Gaps = 2/131 (1%)

Query: 44  LLKLPFTTIFEYLQMLQMIAVSSRSLGPCSMFYLAAAVSDFYVPWKSMAEHKIQSGSGP- 102
           L+ +P+TT+ EYL  L+ IA   + +   ++FYLAAAVSDF++P K ++EHKIQSGSG  
Sbjct: 144 LIMIPYTTLTEYLWYLKAIAERLQIIASRALFYLAAAVSDFHIPPKELSEHKIQSGSGSN 203

Query: 103 -LDMQLLQVPKMLSVLRKEWAPMAFCISFKLETDAEILLEKADMARKKYGMHAVVANELL 161
            L++++  VPK L  L   WAP A  ISFKLETD  IL++KA +A ++Y    V+AN L 
Sbjct: 204 KLEVKMHPVPKFLRFLVDTWAPEASIISFKLETDPSILIDKARVALQRYNHQLVIANLLS 263

Query: 162 SRKEQVVVVTN 172
           +RK  V  VT+
Sbjct: 264 TRKRSVAFVTS 274

Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812)

>sp|P40506|PPCS_YEAST Phosphopantothenate--cysteine ligase CAB2 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=CAB2 PE=1 SV=2

 Score =  101 bits (252), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 67/186 (36%), Positives = 95/186 (51%), Gaps = 21/186 (11%)

Query: 44  LLKLPFTTIFEYLQMLQMIAVSSRSLGPCSMFYLAAAVSDFYVPWKSMAEHKIQSGS--- 100
           LL LPFTT+ +YL  L+ IA    + G C +FYLAAAVSDF+VP+  + +HKIQSG    
Sbjct: 177 LLLLPFTTVNQYLWSLKSIAKLLNNSG-C-LFYLAAAVSDFFVPYSRLPQHKIQSGDNGK 234

Query: 101 ----------------GPLDMQLLQVPKMLSVLRKEWAPMAFCISFKLETDAEILLEKAD 144
                           G L + L  VPK L  L + WA  A  +SFKLETD  +LL K  
Sbjct: 235 MGANNDTEGTTRTTPDGKLIVNLDPVPKFLRRLVESWATQAMIVSFKLETDESMLLYKCT 294

Query: 145 MARKKYGMHAVVANELLSRKEQVVVVTNNGKIPVYRDKTSSDSDVEKPLTKLLVDRHSVY 204
            A  +Y    V+ N L +R +QV+ V+   +   +         +E+ +   ++ RH  +
Sbjct: 295 QALDRYNHQLVIGNLLQTRNKQVIFVSPENRKGDWVRLDEKHHSIEEMIIPEVIARHDKW 354

Query: 205 IKDSNT 210
           +  S T
Sbjct: 355 VAHSKT 360

Catalyzes the first step in the biosynthesis of coenzyme A from vitamin B5, where cysteine is conjugated to 4'-phosphopantothenate to form 4-phosphopantothenoylcysteine.

Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (taxid: 559292)

EC: 6

EC: .

EC: 3

EC: .

EC: 2

EC: .

EC: 5

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	210
255545580	277	cornichon, putative [Ricinus communis] g	0.880	0.667	0.747	1e-75
224063167	327	predicted protein [Populus trichocarpa]	0.842	0.541	0.740	3e-70
224084776	325	predicted protein [Populus trichocarpa]	0.971	0.627	0.647	2e-69
302141894	363	unnamed protein product [Vitis vinifera]	0.866	0.501	0.697	8e-67
359492425	329	PREDICTED: phosphopantothenate--cysteine	0.866	0.553	0.697	1e-66
147766524	329	hypothetical protein VITISV_039485 [Viti	0.866	0.553	0.697	1e-66
356515833	326	PREDICTED: phosphopantothenate--cysteine	0.819	0.527	0.720	1e-66
358248488	320	uncharacterized protein LOC100777777 [Gl	0.819	0.537	0.728	3e-66
357477589	331	Phosphopantothenate-cysteine ligase [Med	0.914	0.580	0.645	9e-66
357477655	321	Phosphopantothenate-cysteine ligase [Med	0.819	0.535	0.703	1e-65

>gi|255545580|ref|XP_002513850.1| cornichon, putative [Ricinus communis] gi|223546936|gb|EEF48433.1| cornichon, putative [Ricinus communis]

 Score =  288 bits (736), Expect = 1e-75,   Method: Compositional matrix adjust.
 Identities = 139/186 (74%), Positives = 159/186 (85%), Gaps = 1/186 (0%)

Query: 24  FLNVLRSLRSQQFKAVAGGLLLKLPFTTIFEYLQMLQMIAVSSRSLGPCSMFYLAAAVSD 83
           F  V R++      AV GG LLKLPFTTIFEYLQ+LQMIA+S ++LGP +MFYLAAAVSD
Sbjct: 92  FEAVKRAINDHH-AAVRGGHLLKLPFTTIFEYLQILQMIAMSMKNLGPHTMFYLAAAVSD 150

Query: 84  FYVPWKSMAEHKIQSGSGPLDMQLLQVPKMLSVLRKEWAPMAFCISFKLETDAEILLEKA 143
           FYVPWK MAEHKIQS SGPLDM+L+QVPKMLSV RKEWAPMAFCISFKLETD++ILLEKA
Sbjct: 151 FYVPWKDMAEHKIQSASGPLDMRLVQVPKMLSVFRKEWAPMAFCISFKLETDSKILLEKA 210

Query: 144 DMARKKYGMHAVVANELLSRKEQVVVVTNNGKIPVYRDKTSSDSDVEKPLTKLLVDRHSV 203
           DMA KKY MH V+ANELL+RKE+V+VVT   KIPV+RDKT  DSDVEKPL +LLV++HS 
Sbjct: 211 DMALKKYKMHVVIANELLTRKEEVIVVTAEQKIPVHRDKTQPDSDVEKPLVELLVEKHSA 270

Query: 204 YIKDSN 209
           YI DS+
Sbjct: 271 YITDSD 276

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224063167|ref|XP_002301023.1| predicted protein [Populus trichocarpa] gi|222842749|gb|EEE80296.1| predicted protein [Populus trichocarpa]

 Score =  270 bits (689), Expect = 3e-70,   Method: Compositional matrix adjust.
 Identities = 131/177 (74%), Positives = 151/177 (85%)

Query: 33  SQQFKAVAGGLLLKLPFTTIFEYLQMLQMIAVSSRSLGPCSMFYLAAAVSDFYVPWKSMA 92
           S    A+AGG LLKL FTTIFEYLQ+LQ IA+S + LG  ++FYLAAAVSDFYVPWKSMA
Sbjct: 150 SDHHAAIAGGHLLKLSFTTIFEYLQILQSIAMSMKDLGSLAVFYLAAAVSDFYVPWKSMA 209

Query: 93  EHKIQSGSGPLDMQLLQVPKMLSVLRKEWAPMAFCISFKLETDAEILLEKADMARKKYGM 152
           EHKIQS SGPLDM+L+QVPKMLS L+KEWAPMAFCISFKLETD++ILLEKA+MA KKY M
Sbjct: 210 EHKIQSASGPLDMRLVQVPKMLSALKKEWAPMAFCISFKLETDSKILLEKAEMALKKYRM 269

Query: 153 HAVVANELLSRKEQVVVVTNNGKIPVYRDKTSSDSDVEKPLTKLLVDRHSVYIKDSN 209
           H VVANEL +RKE+V VVT N KI V RDKT +DSDVE+PL +L+V RHS Y+KDS+
Sbjct: 270 HMVVANELSTRKEEVTVVTGNEKILVCRDKTQADSDVEEPLIELIVGRHSAYVKDSD 326

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224084776|ref|XP_002307404.1| predicted protein [Populus trichocarpa] gi|222856853|gb|EEE94400.1| predicted protein [Populus trichocarpa]

 Score =  267 bits (682), Expect = 2e-69,   Method: Compositional matrix adjust.
 Identities = 134/207 (64%), Positives = 161/207 (77%), Gaps = 3/207 (1%)

Query: 3   LFSCTEGELASHIAVLSLMMRFLNVLRSLRSQQFKAVAGGLLLKLPFTTIFEYLQMLQMI 62
           L  C E    S  + + +   +   ++   S    AVAGG LLK+PFTTIFEYLQ+L+ I
Sbjct: 121 LLECFE---CSDDSAIQVRQPYAEAVKRAISDHHAAVAGGHLLKIPFTTIFEYLQILRSI 177

Query: 63  AVSSRSLGPCSMFYLAAAVSDFYVPWKSMAEHKIQSGSGPLDMQLLQVPKMLSVLRKEWA 122
           A+S R LG  +++YLAAAVSDFYVPWKSMAEHKIQS SGPLDM+L+QVPKMLS L+K WA
Sbjct: 178 AMSMRDLGSHAVYYLAAAVSDFYVPWKSMAEHKIQSASGPLDMRLVQVPKMLSALKKAWA 237

Query: 123 PMAFCISFKLETDAEILLEKADMARKKYGMHAVVANELLSRKEQVVVVTNNGKIPVYRDK 182
           PMAFCISFKLETD++ILLEKA+MA KK+ MH VVANEL +RKE+V VVT N KI V RDK
Sbjct: 238 PMAFCISFKLETDSKILLEKAEMALKKHRMHMVVANELSTRKEEVTVVTGNEKILVCRDK 297

Query: 183 TSSDSDVEKPLTKLLVDRHSVYIKDSN 209
           T SDSDVE+PL +L+V RHS Y+KDS+
Sbjct: 298 TQSDSDVEEPLIELIVGRHSAYVKDSD 324

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|302141894|emb|CBI19097.3| unnamed protein product [Vitis vinifera]

 Score =  258 bits (660), Expect = 8e-67,   Method: Compositional matrix adjust.
 Identities = 127/182 (69%), Positives = 148/182 (81%)

Query: 25  LNVLRSLRSQQFKAVAGGLLLKLPFTTIFEYLQMLQMIAVSSRSLGPCSMFYLAAAVSDF 84
             V++   S    A+A G+LLKLP+TTIFEYLQ+L  IAV  R+LG   MFYLAAAVSDF
Sbjct: 175 FEVVKKAISNHHAAIAEGMLLKLPYTTIFEYLQILHKIAVPMRTLGGQGMFYLAAAVSDF 234

Query: 85  YVPWKSMAEHKIQSGSGPLDMQLLQVPKMLSVLRKEWAPMAFCISFKLETDAEILLEKAD 144
           YVPW SMAEHKIQS SGPLDM+L+QVPKMLS+LRK WAP+AFCISFKLETD+ ILL+KAD
Sbjct: 235 YVPWNSMAEHKIQSASGPLDMRLVQVPKMLSMLRKIWAPLAFCISFKLETDSNILLQKAD 294

Query: 145 MARKKYGMHAVVANELLSRKEQVVVVTNNGKIPVYRDKTSSDSDVEKPLTKLLVDRHSVY 204
           MA +KY MHAVVANEL +RK++VVVVT+N +I V RDK  +  DVE  L KLLVDRHS+Y
Sbjct: 295 MALQKYKMHAVVANELSTRKDEVVVVTSNERISVKRDKAVAGDDVENHLIKLLVDRHSLY 354

Query: 205 IK 206
           IK
Sbjct: 355 IK 356

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359492425|ref|XP_002284301.2| PREDICTED: phosphopantothenate--cysteine ligase 1-like [Vitis vinifera]

 Score =  258 bits (659), Expect = 1e-66,   Method: Compositional matrix adjust.
 Identities = 127/182 (69%), Positives = 148/182 (81%)

Query: 25  LNVLRSLRSQQFKAVAGGLLLKLPFTTIFEYLQMLQMIAVSSRSLGPCSMFYLAAAVSDF 84
             V++   S    A+A G+LLKLP+TTIFEYLQ+L  IAV  R+LG   MFYLAAAVSDF
Sbjct: 141 FEVVKKAISNHHAAIAEGMLLKLPYTTIFEYLQILHKIAVPMRTLGGQGMFYLAAAVSDF 200

Query: 85  YVPWKSMAEHKIQSGSGPLDMQLLQVPKMLSVLRKEWAPMAFCISFKLETDAEILLEKAD 144
           YVPW SMAEHKIQS SGPLDM+L+QVPKMLS+LRK WAP+AFCISFKLETD+ ILL+KAD
Sbjct: 201 YVPWNSMAEHKIQSASGPLDMRLVQVPKMLSMLRKIWAPLAFCISFKLETDSNILLQKAD 260

Query: 145 MARKKYGMHAVVANELLSRKEQVVVVTNNGKIPVYRDKTSSDSDVEKPLTKLLVDRHSVY 204
           MA +KY MHAVVANEL +RK++VVVVT+N +I V RDK  +  DVE  L KLLVDRHS+Y
Sbjct: 261 MALQKYKMHAVVANELSTRKDEVVVVTSNERISVKRDKAVAGDDVENHLIKLLVDRHSLY 320

Query: 205 IK 206
           IK
Sbjct: 321 IK 322

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147766524|emb|CAN76608.1| hypothetical protein VITISV_039485 [Vitis vinifera]

 Score =  258 bits (659), Expect = 1e-66,   Method: Compositional matrix adjust.
 Identities = 127/182 (69%), Positives = 148/182 (81%)

Query: 25  LNVLRSLRSQQFKAVAGGLLLKLPFTTIFEYLQMLQMIAVSSRSLGPCSMFYLAAAVSDF 84
             V++   S    A+A G+LLKLP+TTIFEYLQ+L  IAV  R+LG   MFYLAAAVSDF
Sbjct: 141 FEVVKKAISNHHAAIAEGMLLKLPYTTIFEYLQILHKIAVPMRTLGGQGMFYLAAAVSDF 200

Query: 85  YVPWKSMAEHKIQSGSGPLDMQLLQVPKMLSVLRKEWAPMAFCISFKLETDAEILLEKAD 144
           YVPW SMAEHKIQS SGPLDM+L+QVPKMLS+LRK WAP+AFCISFKLETD+ ILL+KAD
Sbjct: 201 YVPWNSMAEHKIQSASGPLDMRLVQVPKMLSMLRKIWAPLAFCISFKLETDSNILLQKAD 260

Query: 145 MARKKYGMHAVVANELLSRKEQVVVVTNNGKIPVYRDKTSSDSDVEKPLTKLLVDRHSVY 204
           MA +KY MHAVVANEL +RK++VVVVT+N +I V RDK  +  DVE  L KLLVDRHS+Y
Sbjct: 261 MALQKYKMHAVVANELSTRKDEVVVVTSNERISVKRDKAVAGDDVENHLIKLLVDRHSLY 320

Query: 205 IK 206
           IK
Sbjct: 321 IK 322

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356515833|ref|XP_003526602.1| PREDICTED: phosphopantothenate--cysteine ligase 1-like [Glycine max]

 Score =  258 bits (658), Expect = 1e-66,   Method: Compositional matrix adjust.
 Identities = 124/172 (72%), Positives = 145/172 (84%)

Query: 38  AVAGGLLLKLPFTTIFEYLQMLQMIAVSSRSLGPCSMFYLAAAVSDFYVPWKSMAEHKIQ 97
           AVAGGLLLKLPF TIFEYLQMLQ+IA+S R +GP +MFYLAAAVSD+YVPWK M EHKIQ
Sbjct: 154 AVAGGLLLKLPFNTIFEYLQMLQIIAMSMRCIGPHAMFYLAAAVSDYYVPWKDMVEHKIQ 213

Query: 98  SGSGPLDMQLLQVPKMLSVLRKEWAPMAFCISFKLETDAEILLEKADMARKKYGMHAVVA 157
           SGS  LD++L+QVPKMLS+LRK+WAP+AFC SFKLETD+ ILL KA  A +KY MHAVVA
Sbjct: 214 SGSHLLDVKLVQVPKMLSMLRKDWAPLAFCTSFKLETDSNILLNKAGAALEKYKMHAVVA 273

Query: 158 NELLSRKEQVVVVTNNGKIPVYRDKTSSDSDVEKPLTKLLVDRHSVYIKDSN 209
           NEL SRKEQVVVVT+  K+ V RD + SD+DVE PL KLL ++H+ YI+DS 
Sbjct: 274 NELASRKEQVVVVTSAEKVTVQRDNSQSDNDVENPLIKLLSEKHATYIEDSG 325

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|358248488|ref|NP_001239890.1| uncharacterized protein LOC100777777 [Glycine max] gi|255642574|gb|ACU21550.1| unknown [Glycine max]

 Score =  256 bits (655), Expect = 3e-66,   Method: Compositional matrix adjust.
 Identities = 126/173 (72%), Positives = 146/173 (84%), Gaps = 1/173 (0%)

Query: 38  AVAGGLLLKLPFTTIFEYLQMLQMIAVSSRSLGPCSMFYLAAAVSDFYVPWKSMAEHKIQ 97
           AVAGGLLLKLPF TIFEYLQMLQ IA+S R +GP +MFYLAAAVSD+YVPWK M EHKIQ
Sbjct: 147 AVAGGLLLKLPFNTIFEYLQMLQTIAMSMRCIGPRAMFYLAAAVSDYYVPWKEMVEHKIQ 206

Query: 98  SGSGPL-DMQLLQVPKMLSVLRKEWAPMAFCISFKLETDAEILLEKADMARKKYGMHAVV 156
           SGS  L D++L+QVPKMLSVLRK+WAP+AFCISFKLETD+ ILL KA  A +KY MHAVV
Sbjct: 207 SGSSHLLDVKLVQVPKMLSVLRKDWAPLAFCISFKLETDSNILLNKAGAALEKYKMHAVV 266

Query: 157 ANELLSRKEQVVVVTNNGKIPVYRDKTSSDSDVEKPLTKLLVDRHSVYIKDSN 209
           ANEL +RKEQVVVVT+  K+ V RDK+ SD+DVE PL KLL ++H+ YI+DS 
Sbjct: 267 ANELSTRKEQVVVVTSAEKVTVQRDKSLSDNDVENPLIKLLSEKHATYIEDSG 319

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357477589|ref|XP_003609080.1| Phosphopantothenate-cysteine ligase [Medicago truncatula] gi|355510135|gb|AES91277.1| Phosphopantothenate-cysteine ligase [Medicago truncatula]

 Score =  255 bits (651), Expect = 9e-66,   Method: Compositional matrix adjust.
 Identities = 124/192 (64%), Positives = 152/192 (79%)

Query: 18  LSLMMRFLNVLRSLRSQQFKAVAGGLLLKLPFTTIFEYLQMLQMIAVSSRSLGPCSMFYL 77
           +SL   +   ++S       AVAGG LLKLPF+TIFEYLQMLQ+I  S+R +GP +MFYL
Sbjct: 139 VSLRKDYSKAVKSAIVDHHIAVAGGHLLKLPFSTIFEYLQMLQIIGTSTRCIGPRAMFYL 198

Query: 78  AAAVSDFYVPWKSMAEHKIQSGSGPLDMQLLQVPKMLSVLRKEWAPMAFCISFKLETDAE 137
           AAAVSD+YVPWK M EHKIQSGS  LD++L+QVPKMLSVLRK+WAP+AFC+SFKLETD+ 
Sbjct: 199 AAAVSDYYVPWKDMVEHKIQSGSHLLDVKLVQVPKMLSVLRKDWAPLAFCVSFKLETDSS 258

Query: 138 ILLEKADMARKKYGMHAVVANELLSRKEQVVVVTNNGKIPVYRDKTSSDSDVEKPLTKLL 197
           ILL KA+ A ++Y MHAVVANEL +RKEQV+V T   KI V RD + S +DVEKPL KLL
Sbjct: 259 ILLNKANAALERYKMHAVVANELSTRKEQVLVTTGVEKITVRRDNSESANDVEKPLIKLL 318

Query: 198 VDRHSVYIKDSN 209
            +RH+ YI+DS+
Sbjct: 319 SERHATYIEDSS 330

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357477655|ref|XP_003609113.1| Phosphopantothenate-cysteine ligase [Medicago truncatula] gi|355510168|gb|AES91310.1| Phosphopantothenate-cysteine ligase [Medicago truncatula]

 Score =  255 bits (651), Expect = 1e-65,   Method: Compositional matrix adjust.
 Identities = 121/172 (70%), Positives = 145/172 (84%)

Query: 38  AVAGGLLLKLPFTTIFEYLQMLQMIAVSSRSLGPCSMFYLAAAVSDFYVPWKSMAEHKIQ 97
           AVAGG LLKLPF+TIFEYLQMLQ+I  S+R +GP +MFYLAAAVSD+YVPWK M EHKIQ
Sbjct: 149 AVAGGHLLKLPFSTIFEYLQMLQIIGTSTRCIGPRAMFYLAAAVSDYYVPWKDMVEHKIQ 208

Query: 98  SGSGPLDMQLLQVPKMLSVLRKEWAPMAFCISFKLETDAEILLEKADMARKKYGMHAVVA 157
           SGS  LD++L+QVPKMLSVLRK+WAP+AFC+SFKLETD+ ILL KA+ A ++Y MHAVVA
Sbjct: 209 SGSHLLDVKLVQVPKMLSVLRKDWAPLAFCVSFKLETDSSILLNKANAALERYKMHAVVA 268

Query: 158 NELLSRKEQVVVVTNNGKIPVYRDKTSSDSDVEKPLTKLLVDRHSVYIKDSN 209
           NEL +RKEQV+V T   KI V RD + S +DVEKPL KLL +RH+ YI+DS+
Sbjct: 269 NELSTRKEQVLVTTGVEKITVRRDNSESANDVEKPLIKLLSERHATYIEDSS 320

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	210
TAIR|locus:2034690	317	COAB "AT1G12350" [Arabidopsis	0.871	0.577	0.673	2.4e-60
UNIPROTKB|Q9HAB8	311	PPCS "Phosphopantothenate--cys	0.852	0.575	0.467	1.5e-35
ZFIN|ZDB-GENE-060512-104	320	ppcs "phosphopantothenoylcyste	0.852	0.559	0.467	6.5e-35
MGI|MGI:1915237	311	Ppcs "phosphopantothenoylcyste	0.852	0.575	0.439	1.5e-33
POMBASE|SPCC4B3.18	316	SPCC4B3.18 "phosphopantothenat	0.614	0.408	0.488	1.9e-26
FB|FBgn0261285	313	Ppcs "Phosphopantothenoylcyste	0.790	0.530	0.375	8.4e-26
UNIPROTKB|G5EH02	439	MGCH7_ch7g472 "Phosphopantothe	0.342	0.164	0.539	1.7e-24
SGD|S000001345	365	CAB2 "Probable phosphopantothe	0.257	0.147	0.571	1.6e-20
DICTYBASE|DDB_G0282611	389	DDB_G0282611 "phosphopantothen	0.752	0.406	0.364	1.2e-18
GENEDB_PFALCIPARUM|PF11_0036	660	PF11_0036 "hypothetical protei	0.485	0.154	0.304	5.9e-06

TAIR|locus:2034690 COAB "AT1G12350" [Arabidopsis thaliana (taxid:3702)]

 Score = 618 (222.6 bits), Expect = 2.4e-60, P = 2.4e-60
 Identities = 124/184 (67%), Positives = 149/184 (80%)

Query:    27 VLRSLRSQQFKAVAGGLLLKLPFTTIFEYLQMLQMIAVSSRSLGPCSMFYLAAAVSDFYV 86
             V  ++  QQ  AVA G LLKLPF+TI+EYLQML++IA   + +GPCSMFYLAAAVSDFYV
Sbjct:   135 VKMAVMDQQ-AAVAEGRLLKLPFSTIYEYLQMLRLIATILKDVGPCSMFYLAAAVSDFYV 193

Query:    87 PWKSMAEHKIQSGSGPLDMQLLQVPKMLSVLRKEWAPMAFCISFKLETDAEILLEKADMA 146
             PW SM EHKI+SGSGPLD++L QVPKMLS+LR  WAP AFCISFKLETD++ILLEKA  A
Sbjct:   194 PWLSMTEHKIESGSGPLDIRLAQVPKMLSILRSNWAPKAFCISFKLETDSKILLEKATKA 253

Query:   147 RKKYGMHAVVANELLSRKEQVVVVTNNGKIPVYRDKTSSDSDVEKPLTKLLVDRHSVYIK 206
              +KY +HAVVANELL+RKE+VVVV+++G + V RD    +S VE  L +LLVDRHS YIK
Sbjct:   254 LQKYKVHAVVANELLTRKEEVVVVSSSGNVVVRRDSNKPESIVEDNLIRLLVDRHSTYIK 313

Query:   207 DSNT 210
             +S T
Sbjct:   314 ESLT 317

GO:0003824 "catalytic activity" evidence=ISS

GO:0009507 "chloroplast" evidence=ISM

GO:0016020 "membrane" evidence=IEA

GO:0035556 "intracellular signal transduction" evidence=IEA

GO:0004632 "phosphopantothenate--cysteine ligase activity" evidence=IDA

GO:0015937 "coenzyme A biosynthetic process" evidence=IDA

UNIPROTKB|Q9HAB8 PPCS "Phosphopantothenate--cysteine ligase" [Homo sapiens (taxid:9606)]

 Score = 384 (140.2 bits), Expect = 1.5e-35, P = 1.5e-35
 Identities = 85/182 (46%), Positives = 114/182 (62%)

Query:    30 SLRSQQFKAVAGGLLLKLPFTTIFEYLQMLQMIAVSSRSLGPCSMFYLAAAVSDFYVPWK 89
             +LRS Q +A A G  L + FTT+ +YL +LQ  A +   LGP +MFYLAAAVSDFYVP  
Sbjct:   131 ALRSYQ-EAAAAGTFLAVEFTTLADYLHLLQAAAQALNPLGPSAMFYLAAAVSDFYVPVS 189

Query:    90 SMAEHKIQSGSGPLDMQLLQVPKMLSVLRKEWAPMAFCISFKLETDAEILLEKADMARKK 149
              M EHKIQS  GPL + +  VPK+LS L K+WAP AF ISFKLETD  I++ +A  A + 
Sbjct:   190 EMPEHKIQSSGGPLQITMKMVPKLLSPLVKDWAPKAFIISFKLETDPAIVINRARKALEI 249

Query:   150 YGMHAVVANELLSRKEQVVVVTNNG--KIPVYRDKTSSDSDVEKPLTKLLVDRHSVYIKD 207
             Y    VVAN L SR+  V +VT +   K+ +  ++     ++E+ +   L  RH+ +I D
Sbjct:   250 YQHQVVVANILESRQSFVFIVTKDSETKLLLSEEEIEKGVEIEEKIVDNLQSRHTAFIGD 309

Query:   208 SN 209
              N
Sbjct:   310 RN 311

GO:0015937 "coenzyme A biosynthetic process" evidence=IEA

GO:0004632 "phosphopantothenate--cysteine ligase activity" evidence=TAS

GO:0005829 "cytosol" evidence=TAS

GO:0006766 "vitamin metabolic process" evidence=TAS

GO:0006767 "water-soluble vitamin metabolic process" evidence=TAS

GO:0009108 "coenzyme biosynthetic process" evidence=TAS

GO:0015939 "pantothenate metabolic process" evidence=TAS

GO:0044281 "small molecule metabolic process" evidence=TAS

ZFIN|ZDB-GENE-060512-104 ppcs "phosphopantothenoylcysteine synthetase" [Danio rerio (taxid:7955)]

 Score = 378 (138.1 bits), Expect = 6.5e-35, P = 6.5e-35
 Identities = 85/182 (46%), Positives = 116/182 (63%)

Query:    26 NVLRSLRSQQFKAVAGGLLLKLPFTTIFEYLQMLQMIAVSSRSLGPCSMFYLAAAVSDFY 85
             N+ + L+  Q   V+G LLL + F T+ EYL +L+  A +  S+G  +MFYLAAAVSDFY
Sbjct:   136 NIAKVLKRYQAVKVSG-LLLPVEFNTLSEYLHLLKAAAQALSSIGSKAMFYLAAAVSDFY 194

Query:    86 VPWKSMAEHKIQSGSGPLDMQLLQVPKMLSVLRKEWAPMAFCISFKLETDAEILLEKADM 145
             +P   M EHKIQS +GPL + +  VPKMLS L K+WAP AF ISFKLET+  ILLEKA  
Sbjct:   195 IPASEMPEHKIQSSNGPLQISMKMVPKMLSPLVKDWAPQAFVISFKLETNPSILLEKARR 254

Query:   146 ARKKYGMHAVVANELLSRKEQVVVVTNNGKIPVYR--DKTSSDSDVEKPLTKLLVDRHSV 203
             A + Y   AVVAN L +R+  VVVVT + +  +    ++   ++++E  +   L   HS 
Sbjct:   255 ALETYNHQAVVANVLDTRRGYVVVVTKDTQYELLLTDEEVQKEAEIEDKIVTNLTAAHSQ 314

Query:   204 YI 205
             +I
Sbjct:   315 FI 316

GO:0008150 "biological_process" evidence=ND

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

MGI|MGI:1915237 Ppcs "phosphopantothenoylcysteine synthetase" [Mus musculus (taxid:10090)]

 Score = 365 (133.5 bits), Expect = 1.5e-33, P = 1.5e-33
 Identities = 80/182 (43%), Positives = 113/182 (62%)

Query:    30 SLRSQQFKAVAGGLLLKLPFTTIFEYLQMLQMIAVSSRSLGPCSMFYLAAAVSDFYVPWK 89
             +L+S Q +A A G  L + FTT+ +YL +LQ  A++   LG  +MFYLAAAVSDFY+P  
Sbjct:   131 ALQSYQ-EAAAAGTFLAVEFTTLADYLHLLQAAALALSPLGSSAMFYLAAAVSDFYIPVS 189

Query:    90 SMAEHKIQSGSGPLDMQLLQVPKMLSVLRKEWAPMAFCISFKLETDAEILLEKADMARKK 149
              M EHKI S  GPL + +  VPKMLS L K+WAP AF +SFKLETD +I++ +A  A + 
Sbjct:   190 EMPEHKIHSSGGPLQITMKMVPKMLSPLVKDWAPKAFVVSFKLETDPDIIISRARNALEV 249

Query:   150 YGMHAVVANELLSRKEQVVVVTNNGKIPVY--RDKTSSDSDVEKPLTKLLVDRHSVYIKD 207
             Y    VVAN L S K  V++VT + +  +    ++ +    +E+ +   L  RH+ +I D
Sbjct:   250 YQHQVVVANILESIKSFVIIVTKDSETELLLSEEEVAKGLVIEEKIVDDLRSRHTAFICD 309

Query:   208 SN 209
              N
Sbjct:   310 KN 311

GO:0003674 "molecular_function" evidence=ND

GO:0004632 "phosphopantothenate--cysteine ligase activity" evidence=IEA

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

GO:0016874 "ligase activity" evidence=IEA

POMBASE|SPCC4B3.18 SPCC4B3.18 "phosphopantothenate-cysteine ligase (predicted)" [Schizosaccharomyces pombe (taxid:4896)]

 Score = 298 (110.0 bits), Expect = 1.9e-26, P = 1.9e-26
 Identities = 64/131 (48%), Positives = 89/131 (67%)

Query:    44 LLKLPFTTIFEYLQMLQMIAVSSRSLGPCSMFYLAAAVSDFYVPWKSMAEHKIQSGSGP- 102
             L+ +P+TT+ EYL  L+ IA   + +   ++FYLAAAVSDF++P K ++EHKIQSGSG  
Sbjct:   144 LIMIPYTTLTEYLWYLKAIAERLQIIASRALFYLAAAVSDFHIPPKELSEHKIQSGSGSN 203

Query:   103 -LDMQLLQVPKMLSVLRKEWAPMAFCISFKLETDAEILLEKADMARKKYGMHAVVANELL 161
              L++++  VPK L  L   WAP A  ISFKLETD  IL++KA +A ++Y    V+AN L 
Sbjct:   204 KLEVKMHPVPKFLRFLVDTWAPEASIISFKLETDPSILIDKARVALQRYNHQLVIANLLS 263

Query:   162 SRKEQVVVVTN 172
             +RK  V  VT+
Sbjct:   264 TRKRSVAFVTS 274

GO:0004632 "phosphopantothenate--cysteine ligase activity" evidence=ISS

GO:0005634 "nucleus" evidence=ISS;IDA

GO:0005737 "cytoplasm" evidence=ISS

GO:0005829 "cytosol" evidence=IDA

GO:0015937 "coenzyme A biosynthetic process" evidence=ISS

FB|FBgn0261285 Ppcs "Phosphopantothenoylcysteine synthetase" [Drosophila melanogaster (taxid:7227)]

 Score = 292 (107.8 bits), Expect = 8.4e-26, P = 8.4e-26
 Identities = 63/168 (37%), Positives = 102/168 (60%)

Query:    43 LLLKLPFTTIFEYLQMLQMIAVSSRSLGPCSMFYLAAAVSDFYVPWKSMAEHKIQSGSGP 102
             ++L + FT++ +Y+ +L+       +    ++ YLAAAVSDFY+P   M  HK+QSG G 
Sbjct:   142 MILYVNFTSVVDYMWLLRAACECLAAFEERAVLYLAAAVSDFYIPEDMMPTHKMQSGDGA 201

Query:   103 LDMQLLQVPKMLSVLRKEWAPMAFCISFKLETDAEILLEKADMARKKYGMHAVVANELLS 162
               + L  VPKML+ L   W P AF +SFKLETD  +L+ KA  +  KY    V+AN L +
Sbjct:   202 PTISLQLVPKMLAPLASLWVPHAFVVSFKLETDESLLIVKARDSLNKYKHKLVIANVLQT 261

Query:   163 RKEQVVVVT--NNGKIPVYRDKTSSDSDVEKPLTKLLVDRHSVYIKDS 208
             RK +VV VT  ++ ++ + R++T    ++E+P+   +V +H  +I ++
Sbjct:   262 RKHRVVFVTPTDSYELHLTREQTLQGLEIEEPIVADVVQKHGEFISNA 309

GO:0055091 "phospholipid homeostasis" evidence=IMP

GO:0070328 "triglyceride homeostasis" evidence=IMP

GO:0007297 "ovarian follicle cell migration" evidence=IMP

GO:0007303 "cytoplasmic transport, nurse cell to oocyte" evidence=IMP

GO:0030036 "actin cytoskeleton organization" evidence=IMP

GO:0046843 "dorsal appendage formation" evidence=IMP

GO:0004632 "phosphopantothenate--cysteine ligase activity" evidence=ISA

GO:0015937 "coenzyme A biosynthetic process" evidence=ISA

GO:0030708 "germarium-derived female germ-line cyst encapsulation" evidence=IMP

GO:0022416 "chaeta development" evidence=IMP

GO:0030713 "ovarian follicle cell stalk formation" evidence=IMP

GO:0007476 "imaginal disc-derived wing morphogenesis" evidence=IMP

UNIPROTKB|G5EH02 MGCH7_ch7g472 "Phosphopantothenate-cysteine ligase" [Magnaporthe oryzae 70-15 (taxid:242507)]

 Score = 178 (67.7 bits), Expect = 1.7e-24, Sum P(2) = 1.7e-24
 Identities = 41/76 (53%), Positives = 50/76 (65%)

Query:    23 RFLNVLRSLRSQQFKAVAGGLLLKLPFTTIFEYLQMLQMIAVSSRSLGPCSMFYLAAAVS 82
             + L VLR  R+    A  G +LL LPF TI +YL  L+ +A   R LGP  + YLAAAVS
Sbjct:   142 KMLGVLRKYRA----AKQGNMLLMLPFVTITDYLYELRAVAQLMRPLGPRGLLYLAAAVS 197

Query:    83 DFYVPWKSMAEHKIQS 98
             DF+VP + MAEHKIQS
Sbjct:   198 DFFVPPERMAEHKIQS 213

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

SGD|S000001345 CAB2 "Probable phosphopantothenoylcysteine synthetase (PPCS)" [Saccharomyces cerevisiae (taxid:4932)]

 Score = 146 (56.5 bits), Expect = 1.6e-20, Sum P(2) = 1.6e-20
 Identities = 32/56 (57%), Positives = 41/56 (73%)

Query:    44 LLKLPFTTIFEYLQMLQMIAVSSRSLGPCSMFYLAAAVSDFYVPWKSMAEHKIQSG 99
             LL LPFTT+ +YL  L+ IA    + G C +FYLAAAVSDF+VP+  + +HKIQSG
Sbjct:   177 LLLLPFTTVNQYLWSLKSIAKLLNNSG-C-LFYLAAAVSDFFVPYSRLPQHKIQSG 230

GO:0005737 "cytoplasm" evidence=IEA;IDA

GO:0015937 "coenzyme A biosynthetic process" evidence=IEA;IGI;ISS

GO:0005634 "nucleus" evidence=IEA;IDA

GO:0016874 "ligase activity" evidence=IEA

GO:0004632 "phosphopantothenate--cysteine ligase activity" evidence=IEA;ISS

DICTYBASE|DDB_G0282611 DDB_G0282611 "phosphopantothenatecysteine ligase" [Dictyostelium discoideum (taxid:44689)]

 Score = 228 (85.3 bits), Expect = 1.2e-18, P = 1.2e-18
 Identities = 58/159 (36%), Positives = 82/159 (51%)

Query:    37 KAVAGGLLLKLPFTTIFEYLQMLQMIAVSSRSLGPCSMFYLAAAVSDFYVPWKSMAEHKI 96
             K    G L ++ F T+ EYL +L+ I+     L    + Y AAAVSDFY+P   MA+HKI
Sbjct:   169 KFCENGSLERVNFETVGEYLYLLKNISTELSILKSNLIVYAAAAVSDFYIPLDMMAQHKI 228

Query:    97 QSGSGPLDMQLLQVPKMLSVLRKEWAPMAFCISFKLETDAEILLEKADMARKKYGMHAVV 156
             QS +  L + L  VPKM+  L   W P ++ ++FKLETD  IL EK   +   Y    V+
Sbjct:   229 QSKNQSLTITLDPVPKMIKFLVDNWCPNSYIVTFKLETDQTILNEKCLASLSNYNHQLVI 288

Query:   157 ANELLSRKEQVVVVTNNGK-IPVYRDKTSSDSDVEKPLT 194
              N L   +  V+      K I V R+ T      ++ L+
Sbjct:   289 GNLLSDYRNWVIFHQQQSKPIIVKRELTQFQIQQQQKLS 327

GO:0005575 "cellular_component" evidence=ND

GO:0015937 "coenzyme A biosynthetic process" evidence=ISS

GO:0004632 "phosphopantothenate--cysteine ligase activity" evidence=ISS

GO:0016874 "ligase activity" evidence=IEA

GENEDB_PFALCIPARUM|PF11_0036 PF11_0036 "hypothetical protein, conserved" [Plasmodium falciparum (taxid:5833)]

 Score = 130 (50.8 bits), Expect = 5.9e-06, P = 5.9e-06
 Identities = 32/105 (30%), Positives = 53/105 (50%)

Query:    65 SSRSLGPCSMFYLAAAVSDFYVPWKSMAEHKIQSGSGPLDMQLLQVPKMLSVLRKEWAPM 124
             S   L P  +  L AA SDFY+P+  + + KI S + P  +++   PK   +  K +  +
Sbjct:   526 SDEFLFPSHLMILCAAASDFYIPFDDLLDFKIDSNNCPFQIEMYLTPKFYKITYKYFPFL 585

Query:   125 AFCISFKLETDAEILLEKADMARKKYGMHAVVANELLSRKEQVVV 169
               CI FKLE    +L++K++   +   M  ++AN L  R   V +
Sbjct:   586 KHCI-FKLEDQDNVLIKKSNERLEHADM--LIANILTQRNMFVYI 627

GO:0005575 "cellular_component" evidence=ND

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
3rd Layer	6.3.2	0.921
3rd Layer	6.3.2.5	0.914

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	estExt_Genewise1_v1.C_LG_II1144	hypothetical protein (328 aa)
		(Populus trichocarpa)
Predicted Functional Partners:
	gw1.XV.1934.1	SubName- Full=Putative uncharacterized protein; (185 aa)						•	•		0.935
	estExt_fgenesh4_pg.C_LG_XV0519	pantothenate kinase (EC-2.7.1.33) (872 aa)						•	•		0.904
	eugene3.00120751	pantothenate kinase (EC-2.7.1.33) (939 aa)						•	•		0.903
	gw1.XIV.3012.1	aspartate transaminase (EC-2.6.1.1) (403 aa)						•			0.800
	gw1.XIV.1323.1	cysteine synthase/L-3-cyanoalanine synthase (EC-4.4.1.9) (342 aa)						•			0.800
	gw1.VI.2755.1	aspartate transaminase (EC-2.6.1.1) (397 aa)						•			0.800
	gw1.142.135.1	hypothetical protein (336 aa)						•			0.800
	gw1.10449.1.1	annotation not avaliable (181 aa)						•			0.800
	grail3.1757000202	O-acetylserine (thiol) lyase (EC-2.5.1.47) (326 aa)						•			0.800
	grail3.0039007102	RecName- Full=Cysteine synthase; EC=2.5.1.47; (375 aa)						•			0.800

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	210
pfam04127	184	pfam04127, DFP, DNA / pantothenate metabolism flav	3e-12
PRK05579	399	PRK05579, PRK05579, bifunctional phosphopantotheno	2e-11
TIGR00521	390	TIGR00521, coaBC_dfp, phosphopantothenoylcysteine	1e-08
COG0452	392	COG0452, Dfp, Phosphopantothenoylcysteine syntheta	1e-07
PRK09620	229	PRK09620, PRK09620, hypothetical protein; Provisio	0.003

>gnl|CDD|217913 pfam04127, DFP, DNA / pantothenate metabolism flavoprotein

 Score = 62.4 bits (153), Expect = 3e-12
 Identities = 32/105 (30%), Positives = 54/105 (51%), Gaps = 7/105 (6%)

Query: 56  LQMLQMIAVSSRSLGPCSMFYLAAAVSDFYVPWKSMAEHKIQSGSGPLDMQLLQVPKMLS 115
            +ML+  AV         +  +AAAV+D+      +AE KI+     L ++L++ P +L+
Sbjct: 70  EEMLE--AVLEA-FPDADIIIMAAAVADYRP--AEVAEGKIKKEDDELTLELVKNPDILA 124

Query: 116 VLRKEWAPMAFCISFKLETDAEILLEKADMARKKYGMHAVVANEL 160
            L K   P  F + F  ET+   LLE A    ++ G+  +VAN++
Sbjct: 125 ELGKLKKPGQFLVGFAAETEN--LLENARAKLERKGLDLIVANDV 167

The DNA/pantothenate metabolism flavoprotein (EC:4.1.1.36) affects synthesis of DNA, and pantothenate metabolism. Length = 184

>gnl|CDD|235513 PRK05579, PRK05579, bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate synthase; Validated

 Score = 61.7 bits (151), Expect = 2e-11
 Identities = 30/102 (29%), Positives = 53/102 (51%), Gaps = 4/102 (3%)

Query: 59  LQMIAVSSRSLGPCSMFYLAAAVSDFYVPWKSMAEHKIQSGSGPLDMQLLQVPKMLSVLR 118
            +M+     +L    +F +AAAV+D+     ++AE KI+ G G L ++L+  P +L+ + 
Sbjct: 255 QEMLDAVLAALPQADIFIMAAAVADYRP--ATVAEGKIKKGEGELTLELVPNPDILAEVA 312

Query: 119 KEWAPMAFCISFKLETDAEILLEKADMARKKYGMHAVVANEL 160
                  F + F  ET    +LE A    K+ G+  +VAN++
Sbjct: 313 ALKDKRPFVVGFAAETG--DVLEYARAKLKRKGLDLIVANDV 352

Length = 399

>gnl|CDD|233006 TIGR00521, coaBC_dfp, phosphopantothenoylcysteine decarboxylase / phosphopantothenate--cysteine ligase

 Score = 53.5 bits (129), Expect = 1e-08
 Identities = 35/137 (25%), Positives = 66/137 (48%), Gaps = 10/137 (7%)

Query: 44  LLKLPFTTIFEYLQMLQMIAVSSRSLGP-CSMFYLAAAVSDFYVPWKSMAEHKIQSGSGP 102
           LL  P     +     +M+  +   L     +F  AAAV+DF    K++ E KI+     
Sbjct: 237 LLTPPGVKSIKVSTAEEMLEAALNELAKDFDIFISAAAVADFKP--KTVFEGKIKKQGEE 294

Query: 103 LDMQLLQVPKMLSVLRKEWAPMAFCISFKLETDAEILLEKADMARKKYGMHAVVANELL- 161
           L ++L++ P +++ +RK        + FK ET+ + L++ A    KK  +  +VAN++  
Sbjct: 295 LSLKLVKNPDIIAEVRKIK-KHQVIVGFKAETNDD-LIKYAKEKLKKKNLDMIVANDVSQ 352

Query: 162 ----SRKEQVVVVTNNG 174
               S + +V + + +G
Sbjct: 353 RGFGSDENEVYIFSKHG 369

This model represents a bifunctional enzyme that catalyzes the second and third steps (cysteine ligation, EC 6.3.2.5, and decarboxylation, EC 4.1.1.36) in the biosynthesis of coenzyme A (CoA) from pantothenate in bacteria. In early descriptions of this flavoprotein, a ts mutation in one region of the protein appeared to cause a defect in DNA metaobolism rather than an increased need for the pantothenate precursor beta-alanine. This protein was then called dfp, for DNA/pantothenate metabolism flavoprotein. The authors responsible for detecting phosphopantothenate--cysteine ligase activity suggest renaming this bifunctional protein coaBC for its role in CoA biosynthesis. This enzyme contains the FMN cofactor, but no FAD or pyruvoyl group. The amino-terminal region contains the phosphopantothenoylcysteine decarboxylase activity [Biosynthesis of cofactors, prosthetic groups, and carriers, Pantothenate and coenzyme A]. Length = 390

>gnl|CDD|223529 COG0452, Dfp, Phosphopantothenoylcysteine synthetase/decarboxylase [Coenzyme metabolism]

 Score = 50.4 bits (121), Expect = 1e-07
 Identities = 32/145 (22%), Positives = 59/145 (40%), Gaps = 12/145 (8%)

Query: 60  QMIAVSSRSLGPCSMFYLAAAVSDFYVPWKSMAEHKIQSGSGPLDMQLLQVPKMLSVLRK 119
           +M+     +  P  +F  AAAV+D+   W   AE KI+    P  ++L+  P +L+ + +
Sbjct: 251 EMLNAVLEAALPADIFISAAAVADYRPKWV--AEAKIKKQGEPFKLELVPNPDILASVAR 308

Query: 120 EWAPMAFCISFKLETDAEILLEKADMARKKYGMHAVVANELLSRKEQVVVVTNNGKIPVY 179
           ++      + F  ET    ++E A    ++  +  +VAN+       V  +         
Sbjct: 309 DYPKKNILVGFAAETGD--IVEYAREKLERKNLDLIVAND-------VSEIGFGSDDNEV 359

Query: 180 RDKTSSDSDVEKPLT-KLLVDRHSV 203
           R       DVE P   K  +    +
Sbjct: 360 RIIDKDGEDVELPEMSKEELAERIL 384

Length = 392

>gnl|CDD|181997 PRK09620, PRK09620, hypothetical protein; Provisional

 Score = 37.2 bits (86), Expect = 0.003
 Identities = 31/107 (28%), Positives = 50/107 (46%), Gaps = 7/107 (6%)

Query: 95  KIQSGSGPLDMQLLQVPKMLSVLRKEWAPMAFCISFKLETD--AEILLEKADMARKKYGM 152
           KI S   P+ +   + PK+L  + K+W P    + FKLE+D   E L E+A    ++   
Sbjct: 118 KISSDIAPI-IHFQKAPKVLKQI-KQWDPETVLVGFKLESDVNEEELFERAKNRMEEAKA 175

Query: 153 HAVVAN---ELLSRKEQVVVVTNNGKIPVYRDKTSSDSDVEKPLTKL 196
             ++AN    L SR     V+  +GK  +   K  +  ++ K L  L
Sbjct: 176 SVMIANSPHSLYSRGAMHYVIGQDGKGQLCNGKDETAKEIVKRLEVL 222

Length = 229

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	210
KOG2728	302	consensus Uncharacterized conserved protein with s	100.0
PRK13982	475	bifunctional SbtC-like/phosphopantothenoylcysteine	100.0
PF04127	185	DFP: DNA / pantothenate metabolism flavoprotein; I	100.0
PRK05579	399	bifunctional phosphopantothenoylcysteine decarboxy	100.0
PRK09620	229	hypothetical protein; Provisional	99.98
TIGR00521	390	coaBC_dfp phosphopantothenoylcysteine decarboxylas	99.97
PRK06732	229	phosphopantothenate--cysteine ligase; Validated	99.97
TIGR02114	227	coaB_strep phosphopantothenate--cysteine ligase, s	99.97
COG0452	392	Dfp Phosphopantothenoylcysteine synthetase/decarbo	99.94

>KOG2728 consensus Uncharacterized conserved protein with similarity to phosphopantothenoylcysteine synthetase/decarboxylase [General function prediction only]

Probab=100.00  E-value=1.2e-35  Score=255.56  Aligned_cols=190  Identities=47%  Similarity=0.652  Sum_probs=172.0

Q ss_pred             EEEechhhhhHHHHHHHHHHHHHhHHCCcccccCceeeeeHHhHHHHHHHHhhhcCCCCEEEEecccCCcccCCCCcccc
Q 028319           15 IAVLSLMMRFLNVLRSLRSQQFKAVAGGLLLKLPFTTIFEYLQMLQMIAVSSRSLGPCSMFYLAAAVSDFYVPWKSMAEH   94 (210)
Q Consensus        15 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~l~~p~~tv~~v~sa~em~~~~~~~~~~~di~I~aAAVSDf~p~~~~~~~~   94 (210)
                      |.-.|   +..++++.+++.|+.+-..++++.+||.|+.+|.+.++.++.+++.++++.++++|||||||++|++++++|
T Consensus       112 i~~~e---~~~~vf~~~~~~~k~~~k~~~lL~vpFtT~~~Yl~~L~aiae~Ln~~~sramfYLAAAVSDFyVP~~~mpeH  188 (302)
T KOG2728|consen  112 IEKEE---NALPVFAEALEKYKYAEKAGTLLYVPFTTLADYLWLLRAIAEALNPLGSRAMFYLAAAVSDFYVPESEMPEH  188 (302)
T ss_pred             eecCc---hhhHHHHHHHHHHHHHHhhCcEEEEecchHHHHHHHHHHHHHHhccccchHHHHHHHHhcccccChhhcchh
Confidence            44445   788999999999998877788999999999999999999999999999999999999999999999999999


Q ss_pred             ccCCCCCCceEEEecCchHHHHHhhccCCCeeEEEEeeecCchHHHHHHHHHHHHcCCCEEEeecccccceEEEEEeCCC
Q 028319           95 KIQSGSGPLDMQLLQVPKMLSVLRKEWAPMAFCISFKLETDAEILLEKADMARKKYGMHAVVANELLSRKEQVVVVTNNG  174 (210)
Q Consensus        95 KIkk~~~~l~L~L~~~PkIL~~i~~~~~p~~~lVGFkaEt~~e~li~~A~~kL~~k~~D~IVaN~v~~~~n~v~li~~~~  174 (210)
                      ||.|+++.|.|+|.++||+|+.+.+.|.|+.++|+||+|||+..||.+|++.|++|++.+||||.+++++.+|++|+++.
T Consensus       189 KIqSg~~~l~i~l~~VPK~L~~Lv~~WaP~AfiiSFKLETDesiLi~KAr~AL~kY~HqlVIAN~LsTRk~~V~fVt~~~  268 (302)
T KOG2728|consen  189 KIQSGSGPLQITLKPVPKMLSPLVSDWAPKAFIISFKLETDESILINKARKALEKYKHQLVIANLLSTRKSRVVFVTKNI  268 (302)
T ss_pred             hcccCCCCceEEeccchHHHHHHHHhhCcceEEEEEEecCChHHHHHHHHHHHHHhCceeeeeehhhhcceeEEEEecCc
Confidence            99998889999999999999999999999999999999999888999999999999999999999999999999999775


Q ss_pred             eeeecCCCCCChHHHHHHHHHHHHHHHHHHHhhcC
Q 028319          175 KIPVYRDKTSSDSDVEKPLTKLLVDRHSVYIKDSN  209 (210)
Q Consensus       175 ~~~~~~~~K~~~~eiA~~I~d~i~~~~~~~~~~~~  209 (210)
                      ...+.. +|. ..-|++.|++.+.++|.+||+..+
T Consensus       269 ~~~~~l-~~~-~~~IE~~ii~~vv~rH~~~I~~a~  301 (302)
T KOG2728|consen  269 VQWLEL-DKA-PGAIEDSIIKLVVSRHKEFIDEAQ  301 (302)
T ss_pred             ceeeec-ccc-cchhHHHHHHHHHHHHHHHHHhhc
Confidence            433322 221 135899999999999999999664

>PRK13982 bifunctional SbtC-like/phosphopantothenoylcysteine decarboxylase/phosphopantothenate synthase; Provisional

Probab=100.00  E-value=3.8e-35  Score=274.71  Aligned_cols=157  Identities=23%  Similarity=0.344  Sum_probs=138.5

Q ss_pred             HhHHCCcccccCc-eeeeeHHhHHHHHHHHhhhcCCCCEEEEecccCCcccCCCCccccccCCCC-CCceEEEecCchHH
Q 028319           37 KAVAGGLLLKLPF-TTIFEYLQMLQMIAVSSRSLGPCSMFYLAAAVSDFYVPWKSMAEHKIQSGS-GPLDMQLLQVPKML  114 (210)
Q Consensus        37 ~~i~~~~~l~~p~-~tv~~v~sa~em~~~~~~~~~~~di~I~aAAVSDf~p~~~~~~~~KIkk~~-~~l~L~L~~~PkIL  114 (210)
                      .+|+||..+..|. .+++.|+|+.||++++.+.++ +|++|||||||||+|  ++..++||||++ +.++|+|++|||||
T Consensus       300 tlI~Gp~~~~~p~~v~~i~V~ta~eM~~av~~~~~-~Di~I~aAAVaDyrp--~~~~~~KiKk~~~~~~~L~L~~nPDIL  376 (475)
T PRK13982        300 TLISGPVDLADPQGVKVIHVESARQMLAAVEAALP-ADIAIFAAAVADWRV--ATEGGQKLKKGAAGPPPLQLVENPDIL  376 (475)
T ss_pred             EEEeCCcCCCCCCCceEEEecCHHHHHHHHHhhCC-CCEEEEeccccceee--ccccccccCcCCCCCceeeeeeCcHHH
Confidence            3489998887776 789999999999999998877 799999999999999  888999999964 45789999999999


Q ss_pred             HHHhhcc-CCCeeEEEEeeecCchHHHHHHHHHHHHcCCCEEEeeccc-------ccceEEEEEeCCCe----eeecCCC
Q 028319          115 SVLRKEW-APMAFCISFKLETDAEILLEKADMARKKYGMHAVVANELL-------SRKEQVVVVTNNGK----IPVYRDK  182 (210)
Q Consensus       115 ~~i~~~~-~p~~~lVGFkaEt~~e~li~~A~~kL~~k~~D~IVaN~v~-------~~~n~v~li~~~~~----~~~~~~~  182 (210)
                      +.+++.+ .+++++|||||||++  ++++|++||++|||||||||+++       +++|+++||+++|.    +.++.++
T Consensus       377 ~~l~~~~~~~~~~lVGFaaEt~~--l~~~A~~KL~~K~~D~IvaN~v~~~~~gfg~d~n~v~ii~~~g~~~~~~~~~~~s  454 (475)
T PRK13982        377 ATISKLAENRPPLVIGFAAETEH--LIDNARAKLARKGCDWIVANDVSPATGVMGGDRNTVHLLSRDGDAEKVESWPVMT  454 (475)
T ss_pred             HHHhhhcccCCCEEEEEccCchh--HHHHHHHHHHHcCCCEEEEccCCcCCCCcCCCccEEEEEECCCCccceeEcCCCC
Confidence            9999632 224699999999976  99999999999999999999995       58999999999872    5789999


Q ss_pred             CCChHHHHHHHHHHHHHHH
Q 028319          183 TSSDSDVEKPLTKLLVDRH  201 (210)
Q Consensus       183 K~~~~eiA~~I~d~i~~~~  201 (210)
                      |   .+||++|+|+|.+.+
T Consensus       455 K---~~iA~~Il~~i~~~~  470 (475)
T PRK13982        455 K---DEVATALVARIASTF  470 (475)
T ss_pred             H---HHHHHHHHHHHHHHh
Confidence            9   999999999997654

>PF04127 DFP: DNA / pantothenate metabolism flavoprotein; InterPro: IPR007085 This entry represents the C-terminal domain found in DNA/pantothenate metabolism flavoproteins, which affects synthesis of DNA and pantothenate metabolism

Probab=100.00  E-value=7e-35  Score=243.73  Aligned_cols=130  Identities=31%  Similarity=0.424  Sum_probs=105.2

Q ss_pred             HhHHCCcccccC-ceeeeeHHhHHHHHHHHhhhcCCCCEEEEecccCCcccCCCCccccccCC-CCCCceEEEecCchHH
Q 028319           37 KAVAGGLLLKLP-FTTIFEYLQMLQMIAVSSRSLGPCSMFYLAAAVSDFYVPWKSMAEHKIQS-GSGPLDMQLLQVPKML  114 (210)
Q Consensus        37 ~~i~~~~~l~~p-~~tv~~v~sa~em~~~~~~~~~~~di~I~aAAVSDf~p~~~~~~~~KIkk-~~~~l~L~L~~~PkIL  114 (210)
                      .+|+|+..+..| +.+++++.|+.||++++.+.++++|++|||||||||+|  +...++|||| +++.++|+|++|||||
T Consensus        47 ~li~g~~~~~~p~~~~~i~v~sa~em~~~~~~~~~~~Di~I~aAAVsDf~p--~~~~~~KIkK~~~~~l~l~L~~~pkIL  124 (185)
T PF04127_consen   47 TLIHGPSSLPPPPGVKVIRVESAEEMLEAVKELLPSADIIIMAAAVSDFRP--EEPAEGKIKKSSGDELTLELKPTPKIL  124 (185)
T ss_dssp             EEEE-TTS----TTEEEEE-SSHHHHHHHHHHHGGGGSEEEE-SB--SEEE--SCHHSS-G---TT-CEEEEEEE-GGHG
T ss_pred             EEEecCccccccccceEEEecchhhhhhhhccccCcceeEEEecchhheee--hhccccccccccCcceEEEEEeChHHH
Confidence            348899877767 48999999999999999999999999999999999999  8889999997 4468999999999999


Q ss_pred             HHHhhccCCCeeEEEEeeecCchHHHHHHHHHHHHcCCCEEEeeccc-------ccceEEEEE
Q 028319          115 SVLRKEWAPMAFCISFKLETDAEILLEKADMARKKYGMHAVVANELL-------SRKEQVVVV  170 (210)
Q Consensus       115 ~~i~~~~~p~~~lVGFkaEt~~e~li~~A~~kL~~k~~D~IVaN~v~-------~~~n~v~li  170 (210)
                      +.+++.|+|++++|||||||+  +++++|++||++||||+||||+++       +++|+++||
T Consensus       125 ~~l~~~~~~~~~lVGFkaEt~--~l~~~A~~kl~~k~~D~IVaN~~~~~~~gfg~~~n~~~ii  185 (185)
T PF04127_consen  125 AELRKNKKPNQFLVGFKAETE--ELIENAKEKLERKGADLIVANDLSQRGSGFGSDTNEVTII  185 (185)
T ss_dssp             CCHHHHCSTTTEEEEEEEESC--HHHHHHHHHHHHCT-SEEEEEEGCCCTSSSSSSEEEEEE-
T ss_pred             HHHHhcccCCcEEEEEEecCC--cHHHHHHHHhHhhCCCEEEEeCCCcCCCCcCCCceEEEEC
Confidence            999877888899999999997  499999999999999999999998       488999986

These proteins contain ATP, phosphopantothenate, and cysteine binding sites. The structure of this domain has been determined in human phosphopantothenoylcysteine (PPC) synthetase [] and as the PPC synthase domain (CoaB) from the Escherichia coli coenzyme A bifunctional protein CoaBC []. This domain adopts a 3-layer alpha/beta/alpha fold with mixed beta-sheets, which topologically resembles a combination of Rossmann-like and ribokinase-like folds. The structure of these proteins predicts a ping pong mechanism with initial formation of an acyladenylate intermediate, followed by release of pyrophosphate and attack by cysteine to form the final products PPC and AMP. ; PDB: 1U7W_A 1U7U_A 1U80_C 1U7Z_A 1P9O_B 2GK4_A.

>PRK05579 bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate synthase; Validated

Probab=100.00  E-value=2.7e-32  Score=251.37  Aligned_cols=155  Identities=25%  Similarity=0.387  Sum_probs=135.7

Q ss_pred             HHCCcccccCc-eeeeeHHhHHHHHHHHhhhcCCCCEEEEecccCCcccCCCCccccccCCCCCCceEEEecCchHHHHH
Q 028319           39 VAGGLLLKLPF-TTIFEYLQMLQMIAVSSRSLGPCSMFYLAAAVSDFYVPWKSMAEHKIQSGSGPLDMQLLQVPKMLSVL  117 (210)
Q Consensus        39 i~~~~~l~~p~-~tv~~v~sa~em~~~~~~~~~~~di~I~aAAVSDf~p~~~~~~~~KIkk~~~~l~L~L~~~PkIL~~i  117 (210)
                      ++|+..+..|. ....++.++.+|.+++.+.++..|++||+|||+||+|  ....++||||+++.++|+|++|||||+.+
T Consensus       234 v~~~~~~~~~~~~~~~dv~~~~~~~~~v~~~~~~~DilI~~Aav~d~~~--~~~~~~Kikk~~~~~~l~L~~~pdIl~~l  311 (399)
T PRK05579        234 VSGPVNLPTPAGVKRIDVESAQEMLDAVLAALPQADIFIMAAAVADYRP--ATVAEGKIKKGEGELTLELVPNPDILAEV  311 (399)
T ss_pred             eCCCccccCCCCcEEEccCCHHHHHHHHHHhcCCCCEEEEccccccccc--ccccccCccCCCCCceEEEEeCcHHHHHH
Confidence            44554444443 5678999999999999988999999999999999999  88999999997556999999999999999


Q ss_pred             hhccCCCe-eEEEEeeecCchHHHHHHHHHHHHcCCCEEEeeccc------ccceEEEEEeCCCe-eeecCCCCCChHHH
Q 028319          118 RKEWAPMA-FCISFKLETDAEILLEKADMARKKYGMHAVVANELL------SRKEQVVVVTNNGK-IPVYRDKTSSDSDV  189 (210)
Q Consensus       118 ~~~~~p~~-~lVGFkaEt~~e~li~~A~~kL~~k~~D~IVaN~v~------~~~n~v~li~~~~~-~~~~~~~K~~~~ei  189 (210)
                      ++.+ +++ ++|||||||++  ++++|++||++|||||||||+++      +++|+++||+++|. ..++.++|   .+|
T Consensus       312 ~~~~-~~~~~~VGFaaEt~~--~~~~A~~kl~~k~~D~ivaN~i~~~~~fg~~~n~~~ii~~~~~~~~~~~~~K---~~i  385 (399)
T PRK05579        312 AALK-DKRPFVVGFAAETGD--VLEYARAKLKRKGLDLIVANDVSAGGGFGSDDNEVTLIWSDGGEVKLPLMSK---LEL  385 (399)
T ss_pred             Hhcc-CCCCEEEEEccCCch--HHHHHHHHHHHcCCeEEEEecCCcCCCcCCCceEEEEEECCCcEEEcCCCCH---HHH
Confidence            9765 444 89999999987  89999999999999999999993      68999999999874 57899999   999


Q ss_pred             HHHHHHHHHHHH
Q 028319          190 EKPLTKLLVDRH  201 (210)
Q Consensus       190 A~~I~d~i~~~~  201 (210)
                      |++|+|++.+++
T Consensus       386 A~~i~~~i~~~~  397 (399)
T PRK05579        386 ARRLLDEIAERL  397 (399)
T ss_pred             HHHHHHHHHHHh
Confidence            999999997654

>PRK09620 hypothetical protein; Provisional

Probab=99.98  E-value=4.8e-32  Score=233.19  Aligned_cols=144  Identities=23%  Similarity=0.319  Sum_probs=122.2

Q ss_pred             eeeeeHHhHHHHHHHHhhhcC--CCCEEEEecccCCcccCCCCccc---------cccCCCCCCceEEEecCchHHHHHh
Q 028319           50 TTIFEYLQMLQMIAVSSRSLG--PCSMFYLAAAVSDFYVPWKSMAE---------HKIQSGSGPLDMQLLQVPKMLSVLR  118 (210)
Q Consensus        50 ~tv~~v~sa~em~~~~~~~~~--~~di~I~aAAVSDf~p~~~~~~~---------~KIkk~~~~l~L~L~~~PkIL~~i~  118 (210)
                      ..+..+.+..+|..++.+.+.  .+|++||+||||||+|  +....         +||+|+ +.++|+|++|||||+.++
T Consensus        64 ~~~~~V~s~~d~~~~l~~~~~~~~~D~VIH~AAvsD~~~--~~~~~~~~~~~~~~~Ki~~~-~~~~l~L~~~pdIl~~l~  140 (229)
T PRK09620         64 LELHPFEGIIDLQDKMKSIITHEKVDAVIMAAAGSDWVV--DKICDQEGNVLDMNGKISSD-IAPIIHFQKAPKVLKQIK  140 (229)
T ss_pred             eeEEEEecHHHHHHHHHHHhcccCCCEEEECccccceec--ccccccccccccccCCCcCC-CCCeEEEEECcHHHHHHH
Confidence            356678888999888777674  5899999999999999  55444         488885 568999999999999998


Q ss_pred             hccCCCeeEEEEeeecCc--hHHHHHHHHHHHHcCCCEEEeeccc---ccceEEEEEeCCCeeeecCCCCCChHHHHHHH
Q 028319          119 KEWAPMAFCISFKLETDA--EILLEKADMARKKYGMHAVVANELL---SRKEQVVVVTNNGKIPVYRDKTSSDSDVEKPL  193 (210)
Q Consensus       119 ~~~~p~~~lVGFkaEt~~--e~li~~A~~kL~~k~~D~IVaN~v~---~~~n~v~li~~~~~~~~~~~~K~~~~eiA~~I  193 (210)
                      + |.|++++|||||||+.  ++++++|++||++|+|||||||+++   ...++++||++++.. .+.++|   .++|+.|
T Consensus       141 ~-~~~~~~~vGFkaEt~~~~~~l~~~A~~kl~~k~~D~ivaN~~~~~~g~~~~~~ii~~~~~~-~~~~~K---~~iA~~i  215 (229)
T PRK09620        141 Q-WDPETVLVGFKLESDVNEEELFERAKNRMEEAKASVMIANSPHSLYSRGAMHYVIGQDGKG-QLCNGK---DETAKEI  215 (229)
T ss_pred             h-hCCCCEEEEEEeccCCCHHHHHHHHHHHHHHcCCCEEEECCcccccCCCcEEEEEeCCCcc-ccCCCH---HHHHHHH
Confidence            6 5578899999999985  6799999999999999999999995   244589999999853 477899   9999999


Q ss_pred             HHHHHHHH
Q 028319          194 TKLLVDRH  201 (210)
Q Consensus       194 ~d~i~~~~  201 (210)
                      ++++..+-
T Consensus       216 ~~~i~~~~  223 (229)
T PRK09620        216 VKRLEVLC  223 (229)
T ss_pred             HHHHHHhh
Confidence            99997754

>TIGR00521 coaBC_dfp phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase, prokaryotic

Probab=99.97  E-value=1.5e-31  Score=245.74  Aligned_cols=152  Identities=22%  Similarity=0.314  Sum_probs=134.2

Q ss_pred             HHCCcccccCc-eeeeeHHhHHHHHHHHh-hhcCCCCEEEEecccCCcccCCCCccccccCCCCCCceEEEecCchHHHH
Q 028319           39 VAGGLLLKLPF-TTIFEYLQMLQMIAVSS-RSLGPCSMFYLAAAVSDFYVPWKSMAEHKIQSGSGPLDMQLLQVPKMLSV  116 (210)
Q Consensus        39 i~~~~~l~~p~-~tv~~v~sa~em~~~~~-~~~~~~di~I~aAAVSDf~p~~~~~~~~KIkk~~~~l~L~L~~~PkIL~~  116 (210)
                      ++|+.....|. ....++.++.+|++++. ..++..|++|||||||||+|  ....++||+|.++.++|+|++|||||+.
T Consensus       231 ~~g~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~D~~i~~Aavsd~~~--~~~~~~Ki~~~~~~~~l~L~~~pdil~~  308 (390)
T TIGR00521       231 ITGPVSLLTPPGVKSIKVSTAEEMLEAALNELAKDFDIFISAAAVADFKP--KTVFEGKIKKQGEELSLKLVKNPDIIAE  308 (390)
T ss_pred             eCCCCccCCCCCcEEEEeccHHHHHHHHHHhhcccCCEEEEccccccccc--cccccccccccCCceeEEEEeCcHHHHH
Confidence            66776554443 57899999999988887 55678999999999999999  7788999999556789999999999999


Q ss_pred             HhhccCCCeeEEEEeeecCchHHHHHHHHHHHHcCCCEEEeecccc-----cceEEEEEeCCCeeeecCCCCCChHHHHH
Q 028319          117 LRKEWAPMAFCISFKLETDAEILLEKADMARKKYGMHAVVANELLS-----RKEQVVVVTNNGKIPVYRDKTSSDSDVEK  191 (210)
Q Consensus       117 i~~~~~p~~~lVGFkaEt~~e~li~~A~~kL~~k~~D~IVaN~v~~-----~~n~v~li~~~~~~~~~~~~K~~~~eiA~  191 (210)
                      +++.+ |++++|||||||+++ ++++|++||++||||+||||+++.     ++|+++||+++|...++.++|   .++|+
T Consensus       309 l~~~~-~~~~lvgF~aEt~~~-l~~~A~~kl~~k~~D~ivaN~i~~~~fg~~~n~~~li~~~~~~~~~~~~K---~~iA~  383 (390)
T TIGR00521       309 VRKIK-KHQVIVGFKAETNDD-LIKYAKEKLKKKNLDMIVANDVSQRGFGSDENEVYIFSKHGHKELPLMSK---LEVAE  383 (390)
T ss_pred             HHhhC-CCcEEEEEEcCCCcH-HHHHHHHHHHHcCCCEEEEccCCccccCCCCcEEEEEECCCeEEeCCCCH---HHHHH
Confidence            99865 578999999999865 999999999999999999999974     899999999998778999999   99999


Q ss_pred             HHHHHH
Q 028319          192 PLTKLL  197 (210)
Q Consensus       192 ~I~d~i  197 (210)
                      +|++++
T Consensus       384 ~i~~~~  389 (390)
T TIGR00521       384 RILDEI  389 (390)
T ss_pred             HHHHHh
Confidence            999986

This model represents a bifunctional enzyme that catalyzes the second and third steps (cysteine ligation, EC 6.3.2.5, and decarboxylation, EC 4.1.1.36) in the biosynthesis of coenzyme A (CoA) from pantothenate in bacteria. In early descriptions of this flavoprotein, a ts mutation in one region of the protein appeared to cause a defect in DNA metaobolism rather than an increased need for the pantothenate precursor beta-alanine. This protein was then called dfp, for DNA/pantothenate metabolism flavoprotein. The authors responsible for detecting phosphopantothenate--cysteine ligase activity suggest renaming this bifunctional protein coaBC for its role in CoA biosynthesis. This enzyme contains the FMN cofactor, but no FAD or pyruvoyl group. The amino-terminal region contains the phosphopantothenoylcysteine decarboxylase activity.

>PRK06732 phosphopantothenate--cysteine ligase; Validated

Probab=99.97  E-value=3.8e-31  Score=227.20  Aligned_cols=143  Identities=22%  Similarity=0.296  Sum_probs=126.6

Q ss_pred             eeeeeHHhHHHHHHHHhhhcCCCCEEEEecccCCcccCCCCc--------------------cccccCCCCCCceEEEec
Q 028319           50 TTIFEYLQMLQMIAVSSRSLGPCSMFYLAAAVSDFYVPWKSM--------------------AEHKIQSGSGPLDMQLLQ  109 (210)
Q Consensus        50 ~tv~~v~sa~em~~~~~~~~~~~di~I~aAAVSDf~p~~~~~--------------------~~~KIkk~~~~l~L~L~~  109 (210)
                      ..+..+.+..+|.+.+.+.++..|++||+|||+||+|  ...                    .++||||+++.++|+|++
T Consensus        60 v~~i~v~s~~~m~~~l~~~~~~~DivIh~AAvsd~~~--~~~~~~~~~~~~~~v~~~~~~~~~~~Ki~~~~~~~~l~l~~  137 (229)
T PRK06732         60 LSIIEIENVDDLLETLEPLVKDHDVLIHSMAVSDYTP--VYMTDLEEVSASDNLNEFLTKQNTEAKISSASDYQVLFLKK  137 (229)
T ss_pred             eEEEEEecHHHHHHHHHHHhcCCCEEEeCCccCCcee--hhhhhhhhhhhhhhhhhhhccccccCCccCCCCceEEEEEE
Confidence            4667788899999888888888999999999999998  433                    489999976678999999


Q ss_pred             CchHHHHHhhccCCCeeEEEEeeecCc--hHHHHHHHHHHHHcCCCEEEeeccc---ccceEEEEEeCCCeeeecCCCCC
Q 028319          110 VPKMLSVLRKEWAPMAFCISFKLETDA--EILLEKADMARKKYGMHAVVANELL---SRKEQVVVVTNNGKIPVYRDKTS  184 (210)
Q Consensus       110 ~PkIL~~i~~~~~p~~~lVGFkaEt~~--e~li~~A~~kL~~k~~D~IVaN~v~---~~~n~v~li~~~~~~~~~~~~K~  184 (210)
                      |||||+.+++ |+|++++|||||||+.  ++++++|++||++|||||||||+++   ++.|+++|+++++.  .+.++| 
T Consensus       138 ~p~il~~~~~-~~~~~~~vgF~~e~~~~~~~l~~~a~~kl~~~~~d~vvaN~~~~~~~~~~~~~~i~~~~~--~~~~~K-  213 (229)
T PRK06732        138 TPKVISYVKK-WNPNITLVGFKLLVNVSKEELIKVARASLIKNQADYILANDLTDISADQHKALLVSKNEV--YTAQTK-  213 (229)
T ss_pred             ChHHHHHHHh-hCCCcEEEEEEeccCCCHHHHHHHHHHHHHHcCCCEEEEecccccCCCCcEEEEEeCCCe--eeCCCH-
Confidence            9999999987 5688899999999983  6799999999999999999999997   58999999999985  467899 


Q ss_pred             ChHHHHHHHHHHHHHH
Q 028319          185 SDSDVEKPLTKLLVDR  200 (210)
Q Consensus       185 ~~~eiA~~I~d~i~~~  200 (210)
                        .+||+.|++++...
T Consensus       214 --~~~a~~i~~~~~~~  227 (229)
T PRK06732        214 --EEIADLLLERIEKY  227 (229)
T ss_pred             --HHHHHHHHHHHHhh
Confidence              99999999998764

>TIGR02114 coaB_strep phosphopantothenate--cysteine ligase, streptococcal

Probab=99.97  E-value=5.7e-30  Score=219.66  Aligned_cols=142  Identities=21%  Similarity=0.286  Sum_probs=126.2

Q ss_pred             eeeeeHHhHHHHHHHHhhhcCCCCEEEEecccCCcccCCCCc--------------------cccccCCCCCCceEEEec
Q 028319           50 TTIFEYLQMLQMIAVSSRSLGPCSMFYLAAAVSDFYVPWKSM--------------------AEHKIQSGSGPLDMQLLQ  109 (210)
Q Consensus        50 ~tv~~v~sa~em~~~~~~~~~~~di~I~aAAVSDf~p~~~~~--------------------~~~KIkk~~~~l~L~L~~  109 (210)
                      ..+.++.+..+|++++.+.++..|++||+||++||.|  ...                    .++||||+.+.++|+|++
T Consensus        59 ~Dv~d~~s~~~l~~~v~~~~g~iDiLVnnAgv~d~~~--~~~~s~e~~~~~~~~~~~~~~~~~~~Ki~~~~~~~~l~l~~  136 (227)
T TIGR02114        59 LSIREIETTKDLLITLKELVQEHDILIHSMAVSDYTP--VYMTDLEQVQASDNLNEFLSKQNHEAKISSTSEYQVLFLKK  136 (227)
T ss_pred             ceeecHHHHHHHHHHHHHHcCCCCEEEECCEeccccc--hhhCCHHHHhhhcchhhhhccccccCCcccCCCceeEEEEE
Confidence            4778899999999999998999999999999999997  332                    369999976678999999


Q ss_pred             CchHHHHHhhccCCCeeEEEEeeecCc--hHHHHHHHHHHHHcCCCEEEeeccc---ccceEEEEEeCCCeeeecCCCCC
Q 028319          110 VPKMLSVLRKEWAPMAFCISFKLETDA--EILLEKADMARKKYGMHAVVANELL---SRKEQVVVVTNNGKIPVYRDKTS  184 (210)
Q Consensus       110 ~PkIL~~i~~~~~p~~~lVGFkaEt~~--e~li~~A~~kL~~k~~D~IVaN~v~---~~~n~v~li~~~~~~~~~~~~K~  184 (210)
                      |||||+.+++ +.|++++|||||||+.  ++++++|++||++|||||||||+++   ++.|+++||++++.  ++.++| 
T Consensus       137 ~p~il~~~~~-~~~~~~~vgF~~e~~~~~~~l~~~a~~kl~~~~~d~ivaN~~~~~~~~~~~~~li~~~~~--~~~~~k-  212 (227)
T TIGR02114       137 TPKVISLVKE-WNPQIHLVGFKLLVNVTQEELVKVARASLIKNQADFILANDLTDISADQHKALLIEKNQV--QTAQTK-  212 (227)
T ss_pred             ChHHHHHHHh-hCCCcEEEEEEeccCCCHHHHHHHHHHHHHHcCCCEEEEcchhhcCCCCceEEEEeCCCe--eecCCH-
Confidence            9999999996 4578899999999873  6799999999999999999999994   79999999999983  566899 


Q ss_pred             ChHHHHHHHHHHHHH
Q 028319          185 SDSDVEKPLTKLLVD  199 (210)
Q Consensus       185 ~~~eiA~~I~d~i~~  199 (210)
                        .+||..|++.+..
T Consensus       213 --~~ia~~i~~~~~~  225 (227)
T TIGR02114       213 --EEIAELLYEKVQK  225 (227)
T ss_pred             --HHHHHHHHHHHHh
Confidence              9999999999865

In most bacteria, a single bifunctional protein catalyses phosphopantothenoylcysteine decarboxylase and phosphopantothenate--cysteine ligase activities, sequential steps in coenzyme A biosynthesis (see TIGR00521). These activities reside in separate proteins encoded by tandem genes in some bacterial lineages. This model describes proteins from the genera Streptococcus and Enterococcus homologous to the C-terminal region of TIGR00521, corresponding to phosphopantothenate--cysteine ligase activity.

>COG0452 Dfp Phosphopantothenoylcysteine synthetase/decarboxylase [Coenzyme metabolism]

Probab=99.94  E-value=6.2e-27  Score=215.37  Aligned_cols=156  Identities=21%  Similarity=0.373  Sum_probs=142.2

Q ss_pred             HHCCcccccCc-eeeeeHHhHHHHHHHHhhhcCCCCEEEEecccCCcccCCCCccccccCCCCCCceEEEecCchHHHHH
Q 028319           39 VAGGLLLKLPF-TTIFEYLQMLQMIAVSSRSLGPCSMFYLAAAVSDFYVPWKSMAEHKIQSGSGPLDMQLLQVPKMLSVL  117 (210)
Q Consensus        39 i~~~~~l~~p~-~tv~~v~sa~em~~~~~~~~~~~di~I~aAAVSDf~p~~~~~~~~KIkk~~~~l~L~L~~~PkIL~~i  117 (210)
                      ++|+..+..|. ...+.+.|+.||.+++......+|++|++|||+||+|  +...++||+|..+.++|+|.+|||||..+
T Consensus       229 v~g~~~~~~p~~v~~v~v~sa~em~~av~~~~~~~d~~i~~aAvaD~~~--~~~~~~Kikk~~~~~~l~l~~n~dil~~~  306 (392)
T COG0452         229 VSGPTSLKIPAGVEVVKVESAEEMLNAVLEAALPADIFISAAAVADYRP--KWVAEAKIKKQGEPFKLELVPNPDILASV  306 (392)
T ss_pred             ecCCCcCCCCCcceeeeeeeHHHHHHHHHhcccccCEEEEecccccccc--ccccccceeecCCcceEEeccChhHHHHH
Confidence            88988888887 5699999999999999987788999999999999999  88999999997667999999999999999


Q ss_pred             hhccCCCeeEEEEeeecCchHHHHHHHHHHHHcCCCEEEeeccc-----ccceEEEEEeCCCe-eeecCCCCCChHHHHH
Q 028319          118 RKEWAPMAFCISFKLETDAEILLEKADMARKKYGMHAVVANELL-----SRKEQVVVVTNNGK-IPVYRDKTSSDSDVEK  191 (210)
Q Consensus       118 ~~~~~p~~~lVGFkaEt~~e~li~~A~~kL~~k~~D~IVaN~v~-----~~~n~v~li~~~~~-~~~~~~~K~~~~eiA~  191 (210)
                      +..+...+++|||++||+.  ++++|++||++|++|+||+|+++     ++.|++++++++|. ..++.++|   .++|+
T Consensus       307 ~~~~~~~~~~Vgfaaet~~--~~~~a~~kl~~k~~D~i~aNdv~~~~fg~d~n~~~~~~~d~~~~~~~~~~k---~~~a~  381 (392)
T COG0452         307 ARDYPKKNILVGFAAETGD--IVEYAREKLERKNLDLIVANDVSEIGFGSDDNEVRIIDKDGEDVELPEMSK---EELAE  381 (392)
T ss_pred             HhhccCCCeEEEEeccchH--HHHHHHHhhhhcCCCeEEeccccccCCCCCccceEEecCCCCeeeccccCH---HHHHH
Confidence            9865333389999999998  99999999999999999999998     58999999999885 79999999   99999


Q ss_pred             HHHHHHHHHH
Q 028319          192 PLTKLLVDRH  201 (210)
Q Consensus       192 ~I~d~i~~~~  201 (210)
                      +|++.+.+++
T Consensus       382 ~i~~~i~~~~  391 (392)
T COG0452         382 RILDEIAELL  391 (392)
T ss_pred             HHHHHHHHhh
Confidence            9999998764

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	210
1p9o_A	313	Crystal Structure Of Phosphopantothenoylcysteine Sy		1e-37

>pdb|1P9O|A Chain A, Crystal Structure Of Phosphopantothenoylcysteine Synthetase Length = 313

Iteration: 1
 Score =  152 bits (385), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 84/182 (46%), Positives = 115/182 (63%), Gaps = 3/182 (1%)
Query: 30  SLRSQQFKAVAGGLLLKLPFTTIFEYLQMLQMIAVSSRSLGPCSMFYLAAAVSDFYVPWK 89
           +LRS Q +A A G  L + FTT+ +YL +LQ  A +   LGP +MFYLAAAVSDFYVP  
Sbjct: 133 ALRSYQ-EAAAAGTFLVVEFTTLADYLHLLQAAAQALNPLGPSAMFYLAAAVSDFYVPVS 191
Query: 90  SMAEHKIQSGSGPLDMQLLQVPKMLSVLRKEWAPMAFCISFKLETDAEILLEKADMARKK 149
            M EHKI+S  GPL + +  VPK+LS L K+WAP AF ISFKLETD  I++ +A  A + 
Sbjct: 192 EMPEHKIESSGGPLQITMKMVPKLLSPLVKDWAPKAFIISFKLETDPAIVINRARKALEI 251
Query: 150 YGMHAVVANELLSRKEQVVVVTNNG--KIPVYRDKTSSDSDVEKPLTKLLVDRHSVYIKD 207
           Y    VVAN L SR+  V++VT +   K+ +  ++     ++E+ +   L  RH+ +I D
Sbjct: 252 YQHQVVVANILESRQSFVLIVTKDSETKLLLSEEEIEKGVEIEEKIVDNLQSRHTAFIGD 311
Query: 208 SN 209
            N
Sbjct: 312 RN 313

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	210
1p9o_A	313	Phosphopantothenoylcysteine synthetase; ligase; 2.	3e-54
2gk4_A	232	Conserved hypothetical protein; alpha-beta-alpha s	5e-09
1u7z_A	226	Coenzyme A biosynthesis bifunctional protein coabc	3e-05

>1p9o_A Phosphopantothenoylcysteine synthetase; ligase; 2.30A {Homo sapiens} SCOP: c.72.3.1 Length = 313

 Score =  174 bits (442), Expect = 3e-54
 Identities = 85/211 (40%), Positives = 123/211 (58%), Gaps = 3/211 (1%)

Query: 1   MLLFSCTEGELASHIAVLSLMMRFLNVLRSLRSQQFKAVAGGLLLKLPFTTIFEYLQMLQ 60
           +     +   L+  +++ +          +LRS Q +A A G  L + FTT+ +YL +LQ
Sbjct: 104 LSALRPSGPALSGLLSLEAEENALPGFAEALRSYQ-EAAAAGTFLVVEFTTLADYLHLLQ 162

Query: 61  MIAVSSRSLGPCSMFYLAAAVSDFYVPWKSMAEHKIQSGSGPLDMQLLQVPKMLSVLRKE 120
             A +   LGP +MFYLAAAVSDFYVP   M EHKI+S  GPL + +  VPK+LS L K+
Sbjct: 163 AAAQALNPLGPSAMFYLAAAVSDFYVPVSEMPEHKIESSGGPLQITMKMVPKLLSPLVKD 222

Query: 121 WAPMAFCISFKLETDAEILLEKADMARKKYGMHAVVANELLSRKEQVVVVTNNG--KIPV 178
           WAP AF ISFKLETD  I++ +A  A + Y    VVAN L SR+  V++VT +   K+ +
Sbjct: 223 WAPKAFIISFKLETDPAIVINRARKALEIYQHQVVVANILESRQSFVLIVTKDSETKLLL 282

Query: 179 YRDKTSSDSDVEKPLTKLLVDRHSVYIKDSN 209
             ++     ++E+ +   L  RH+ +I D N
Sbjct: 283 SEEEIEKGVEIEEKIVDNLQSRHTAFIGDRN 313

>2gk4_A Conserved hypothetical protein; alpha-beta-alpha sandwich, flavoprotein, structural genomics protein structure initiative; 1.83A {Streptococcus pneumoniae} Length = 232

 Score = 53.4 bits (129), Expect = 5e-09
 Identities = 30/143 (20%), Positives = 53/143 (37%), Gaps = 26/143 (18%)

Query: 60  QMIAVSSRSLGPCSMFYLAAAVSDF------------------YVPWKSMAEHKIQSGSG 101
            ++      +    +   + AVSD+                      K   + KI S   
Sbjct: 73  DLLIEMQERVQDYQVLIHSMAVSDYTPVYMTGLEEVQASSNLKEFLSKQNHQAKISSTDE 132

Query: 102 PLDMQLLQVPKMLSVLRKEWAPMAFCISFKLETDAEI--LLEKADMARKKYGMHAVVANE 159
              + L + PK++S++ KEW P    I FKL  D     L++ A  +  K     ++AN+
Sbjct: 133 VQVLFLKKTPKIISLV-KEWNPTIHLIGFKLLVDVTEDHLVDIARKSLIKNQADLIIAND 191

Query: 160 LLSRKE----QVVVVTNNGKIPV 178
            L++      + + V  N    V
Sbjct: 192 -LTQISADQHRAIFVEKNQLQTV 213

>1u7z_A Coenzyme A biosynthesis bifunctional protein coabc; ligase; HET: PMT; 2.30A {Escherichia coli} SCOP: c.72.3.1 PDB: 1u7w_A* 1u7u_A* 1u80_A* Length = 226

 Score = 42.1 bits (100), Expect = 3e-05
 Identities = 23/130 (17%), Positives = 54/130 (41%), Gaps = 16/130 (12%)

Query: 59  LQMIAVSSRSLGPCSMFYLAAAVSDFYVPWKSMAEHKI---QSGSGPLDMQLLQVPKMLS 115
           L+M A  + S+   ++F   AAV+D+     ++A  KI    +    L +++++ P +++
Sbjct: 75  LEMEAAVNASVQQQNIFIGCAAVADYRA--ATVAPEKIKKQATQGDELTIKMVKNPDIVA 132

Query: 116 VLRKEWAPMAFCISFKLETDAEILLEKADMARKKYGMHAVVANELLSRKE--------QV 167
            +        + + F  ET+      +    RK   +  + AN+ +S+           +
Sbjct: 133 GVAALKDHRPYVVGFAAETNNVEEYARQKRIRKNLDL--ICAND-VSQPTQGFNSDNNAL 189

Query: 168 VVVTNNGKIP 177
            +   +G   
Sbjct: 190 HLFWQDGDKV 199

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	210
1p9o_A	313	Phosphopantothenoylcysteine synthetase; ligase; 2.	100.0
2gk4_A	232	Conserved hypothetical protein; alpha-beta-alpha s	100.0
1u7z_A	226	Coenzyme A biosynthesis bifunctional protein coabc	100.0

>1p9o_A Phosphopantothenoylcysteine synthetase; ligase; 2.30A {Homo sapiens} SCOP: c.72.3.1

Probab=100.00  E-value=1.2e-43  Score=316.15  Aligned_cols=188  Identities=42%  Similarity=0.637  Sum_probs=151.8

Q ss_pred             cEEEechhhhhHHHHHHHHHHHHHhHHCCcccccCceeeeeHHhHHHHHHHHhhhcCCCCEEEEecccCCcccCCCCccc
Q 028319           14 HIAVLSLMMRFLNVLRSLRSQQFKAVAGGLLLKLPFTTIFEYLQMLQMIAVSSRSLGPCSMFYLAAAVSDFYVPWKSMAE   93 (210)
Q Consensus        14 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~l~~p~~tv~~v~sa~em~~~~~~~~~~~di~I~aAAVSDf~p~~~~~~~   93 (210)
                      .|.+..   ++...+..++++|+++.++++++.+||.|+.||...++.++..++.++.+|++|||||||||+||.+.+++
T Consensus       119 ~i~v~v---~sa~~m~~av~~~~~~~~~~~l~~i~f~tv~eyl~~L~~~~~~l~~~~~~di~i~aAAVsDf~~p~~~~~~  195 (313)
T 1p9o_A          119 SLEAEE---NALPGFAEALRSYQEAAAAGTFLVVEFTTLADYLHLLQAAAQALNPLGPSAMFYLAAAVSDFYVPVSEMPE  195 (313)
T ss_dssp             EEEEET---TTSTTHHHHHHHHHHHHHHTCEEEEEECBHHHHHHHHHHHHHHHGGGGGGEEEEECSBCCSEECC------
T ss_pred             eeeecc---ccHHHHHHHHHHHhhhhccccceeeccccHHHHHHHHHHhhHHhhccCCCCEEEECCchhhccCCcccccc
Confidence            455555   77888999999999999999999999999999999999999999999999999999999999998777889


Q ss_pred             cccCCCCCCceEEEecCchHHHHHhhccCCCeeEEEEeeecCchHHHHHHHHHHHHcCCCEEEeecccccceEEEEEeCC
Q 028319           94 HKIQSGSGPLDMQLLQVPKMLSVLRKEWAPMAFCISFKLETDAEILLEKADMARKKYGMHAVVANELLSRKEQVVVVTNN  173 (210)
Q Consensus        94 ~KIkk~~~~l~L~L~~~PkIL~~i~~~~~p~~~lVGFkaEt~~e~li~~A~~kL~~k~~D~IVaN~v~~~~n~v~li~~~  173 (210)
                      +||||+++.++|+|++|||||+.+++.|.|++++|||||||++++++++|++||++||||+||||++++++|+|+||+++
T Consensus       196 ~KIkk~~~~l~L~L~~~PdIL~~l~~~~~p~~~lVGFkaET~~~~l~~~A~~kL~~k~~DlIVaN~l~~~~n~v~li~~~  275 (313)
T 1p9o_A          196 HKIESSGGPLQITMKMVPKLLSPLVKDWAPKAFIISFKLETDPAIVINRARKALEIYQHQVVVANILESRQSFVLIVTKD  275 (313)
T ss_dssp             --------CEEEECEECGGGGSCCGGGTCTTSEEEEEECCCCHHHHHHHHHHHHHHHCCSEEEEEC------CEEEEETT
T ss_pred             cccccCCCCceEEeecCchHHHHHHhhcCCCcEEEEEEecCCChHHHHHHHHHHHHcCCCEEEEecCcCCccEEEEEECC
Confidence            99999756799999999999999998888888999999999977799999999999999999999999999999999999


Q ss_pred             CeeeecCCCCCChHHH------HHHHHHHHHHHHHHHHhhc
Q 028319          174 GKIPVYRDKTSSDSDV------EKPLTKLLVDRHSVYIKDS  208 (210)
Q Consensus       174 ~~~~~~~~~K~~~~ei------A~~I~d~i~~~~~~~~~~~  208 (210)
                      |...++ ++|   .++      |+.|+++|.++|.+||+.+
T Consensus       276 ~~~~~~-~sK---~~~a~~~eIa~~Iv~~l~~~h~~~i~~~  312 (313)
T 1p9o_A          276 SETKLL-LSE---EEIEKGVEIEEKIVDNLQSRHTAFIGDR  312 (313)
T ss_dssp             EEEEEC-CCH---HHHHTTCCHHHHHHHHHHHHHHHHC---
T ss_pred             CcEEcc-CCH---HHHccchHHHHHHHHHHHHHHHHHHhcc
Confidence            866664 677   654      5999999999999999864

>2gk4_A Conserved hypothetical protein; alpha-beta-alpha sandwich, flavoprotein, structural genomics protein structure initiative; 1.83A {Streptococcus pneumoniae}

Probab=100.00  E-value=7.1e-37  Score=262.55  Aligned_cols=153  Identities=20%  Similarity=0.261  Sum_probs=136.6

Q ss_pred             HHCCccccc--C-ceeeeeHHhHHHHHHHHhhhcCCCCEEEEecccCCcccCCCC--------------------ccccc
Q 028319           39 VAGGLLLKL--P-FTTIFEYLQMLQMIAVSSRSLGPCSMFYLAAAVSDFYVPWKS--------------------MAEHK   95 (210)
Q Consensus        39 i~~~~~l~~--p-~~tv~~v~sa~em~~~~~~~~~~~di~I~aAAVSDf~p~~~~--------------------~~~~K   95 (210)
                      ++|+..+..  | ...+.++.++.+|+.++.+.++.+|++|||||||||+|  ..                    ..++|
T Consensus        49 v~~~~~~~~~~~~~~~~~~v~s~~em~~~v~~~~~~~Dili~aAAvsD~~p--~~~~~~e~~~~~~~~~~~l~~~~~~~K  126 (232)
T 2gk4_A           49 ITTKRALKPEPHPNLSIREITNTKDLLIEMQERVQDYQVLIHSMAVSDYTP--VYMTGLEEVQASSNLKEFLSKQNHQAK  126 (232)
T ss_dssp             EECTTSCCCCCCTTEEEEECCSHHHHHHHHHHHGGGCSEEEECSBCCSEEE--EEEEEHHHHHHCSCGGGGGGCCGGGCC
T ss_pred             EeCCccccccCCCCeEEEEHhHHHHHHHHHHHhcCCCCEEEEcCccccccc--hhhcchhhhhccccchhhhcccccccC
Confidence            667665543  2 36899999999999999999999999999999999999  54                    47899


Q ss_pred             cCCCCCCceEEEecCchHHHHHhhccCCCeeEEEEeeecCc--hHHHHHHHHHHHHcCCCEEEeeccc---ccceEEEEE
Q 028319           96 IQSGSGPLDMQLLQVPKMLSVLRKEWAPMAFCISFKLETDA--EILLEKADMARKKYGMHAVVANELL---SRKEQVVVV  170 (210)
Q Consensus        96 Ikk~~~~l~L~L~~~PkIL~~i~~~~~p~~~lVGFkaEt~~--e~li~~A~~kL~~k~~D~IVaN~v~---~~~n~v~li  170 (210)
                      |||+++.++|+|++|||||+.+++ |.|++++|||||||+.  ++++++|++||++|||||||||+++   +++|+++||
T Consensus       127 Ikk~~~~l~l~L~~~PdIL~~l~~-~~p~~~lVGFaaEt~~~~~~l~~~A~~kL~~k~~D~IvaN~v~~f~~~~n~v~li  205 (232)
T 2gk4_A          127 ISSTDEVQVLFLKKTPKIISLVKE-WNPTIHLIGFKLLVDVTEDHLVDIARKSLIKNQADLIIANDLTQISADQHRAIFV  205 (232)
T ss_dssp             CCTTCSEEEEEEEECCCCHHHHHH-HCTTSEEEEEEEESSCCHHHHHHHHHHHHHHHTCSEEEEEEGGGBCSSCBCEEEE
T ss_pred             ccCCCCCeeEEEEeChHHHHHHHh-cCCCcEEEEEEeccCCchhHHHHHHHHHHHHhCCCEEEEecccccCcCceEEEEE
Confidence            999755689999999999999997 7888999999999984  5699999999999999999999998   699999999


Q ss_pred             eCCCeeeecCCCCCChHHHHHHHHHHHHH
Q 028319          171 TNNGKIPVYRDKTSSDSDVEKPLTKLLVD  199 (210)
Q Consensus       171 ~~~~~~~~~~~~K~~~~eiA~~I~d~i~~  199 (210)
                      +++|  .++.++|   .+||+.|+++|..
T Consensus       206 ~~~~--~~~~~sK---~eiA~~I~~~i~~  229 (232)
T 2gk4_A          206 EKNQ--LQTVQTK---EEIAELLLEKIQA  229 (232)
T ss_dssp             CSSC--EEEESSH---HHHHHHHHHHHHT
T ss_pred             ECCC--cccCCCH---HHHHHHHHHHHHh
Confidence            9998  6788999   9999999999843

>1u7z_A Coenzyme A biosynthesis bifunctional protein coabc; ligase; HET: PMT; 2.30A {Escherichia coli} SCOP: c.72.3.1 PDB: 1u7w_A* 1u7u_A* 1u80_A*

Probab=100.00  E-value=2.3e-34  Score=246.09  Aligned_cols=157  Identities=20%  Similarity=0.282  Sum_probs=136.5

Q ss_pred             HHCCcccccCc-eeeeeHHhHHHHHHHHhhhcCCCCEEEEecccCCcccCCCCccccccCC---CCCCceEEEecCchHH
Q 028319           39 VAGGLLLKLPF-TTIFEYLQMLQMIAVSSRSLGPCSMFYLAAAVSDFYVPWKSMAEHKIQS---GSGPLDMQLLQVPKML  114 (210)
Q Consensus        39 i~~~~~l~~p~-~tv~~v~sa~em~~~~~~~~~~~di~I~aAAVSDf~p~~~~~~~~KIkk---~~~~l~L~L~~~PkIL  114 (210)
                      ++++..+..|. ..+.++.++.+|++++.+.++..|++|++|||+||+|  ...+++||||   ++..++|+|++|||||
T Consensus        54 ~~~~~~l~~~~g~~~~dv~~~~~~~~~v~~~~~~~Dili~~Aav~d~~p--~~~~~~KIkk~~~~~~~l~l~L~~~pdIL  131 (226)
T 1u7z_A           54 VSGPVSLPTPPFVKRVDVMTALEMEAAVNASVQQQNIFIGCAAVADYRA--ATVAPEKIKKQATQGDELTIKMVKNPDIV  131 (226)
T ss_dssp             EECSCCCCCCTTEEEEECCSHHHHHHHHHHHGGGCSEEEECCBCCSEEE--SSCCSSCC-------CEEEEEEEECCCHH
T ss_pred             EECCcccccCCCCeEEccCcHHHHHHHHHHhcCCCCEEEECCcccCCCC--ccCChHHhccccccCCceEEEEeecHHHH
Confidence            34554444443 5789999999999999999999999999999999998  7788999999   4346899999999999


Q ss_pred             HHHhhccCCCeeEEEEeeecCchHHHHHHHHHHHHcCCCEEEeeccc-------ccceEEEEEeCCCeeeecCCCCCChH
Q 028319          115 SVLRKEWAPMAFCISFKLETDAEILLEKADMARKKYGMHAVVANELL-------SRKEQVVVVTNNGKIPVYRDKTSSDS  187 (210)
Q Consensus       115 ~~i~~~~~p~~~lVGFkaEt~~e~li~~A~~kL~~k~~D~IVaN~v~-------~~~n~v~li~~~~~~~~~~~~K~~~~  187 (210)
                      +.+++.|.|++++|||||||++  ++++|++||++|||||||+|+++       +++|++++++++|...++.++|   .
T Consensus       132 ~~l~~~~~~~~~~VGFaaEt~~--l~e~A~~kL~~k~~d~ivaN~~~~~~~~f~~~~n~v~li~~~~~~~~~~~sK---~  206 (226)
T 1u7z_A          132 AGVAALKDHRPYVVGFAAETNN--VEEYARQKRIRKNLDLICANDVSQPTQGFNSDNNALHLFWQDGDKVLPLERK---E  206 (226)
T ss_dssp             HHHHHCSSSCCEEEEEEEESSS--HHHHHHHHHHHHTCSEEEEEECSSTTSSTTSSEEEEEEEETTEEEEEEEEEH---H
T ss_pred             HHHHhhhcCCcEEEEcchhhch--HHHHHHHHHHhcCCCEEEEeeccccCCccCCCceEEEEEeCCCcEecCCCCH---H
Confidence            9999876678899999999987  99999999999999999999998       6899999999998777899999   9


Q ss_pred             HHHHHHHHHHHHHHH
Q 028319          188 DVEKPLTKLLVDRHS  202 (210)
Q Consensus       188 eiA~~I~d~i~~~~~  202 (210)
                      +||+.|++.|.+++.
T Consensus       207 ~vA~~I~~~i~~~~~  221 (226)
T 1u7z_A          207 LLGQLLLDEIVTRYD  221 (226)
T ss_dssp             HHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhh
Confidence            999999999987653

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	210
d1p9oa_	290	c.72.3.1 (A:) Phosphopantothenoylcysteine syntheta	3e-38
d1u7za_	223	c.72.3.1 (A:) Coenzyme A biosynthesis bifunctional	0.001

>d1p9oa_ c.72.3.1 (A:) Phosphopantothenoylcysteine synthetase {Human (Homo sapiens) [TaxId: 9606]} Length = 290

class: Alpha and beta proteins (a/b)
fold: Ribokinase-like
superfamily: CoaB-like
family: CoaB-like
domain: Phosphopantothenoylcysteine synthetase
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  131 bits (331), Expect = 3e-38
 Identities = 83/204 (40%), Positives = 120/204 (58%), Gaps = 3/204 (1%)

Query: 4   FSCTEGELASHIAVLSLMMRFLNVLRSLRSQQFKAVAGGLLLKLPFTTIFEYLQMLQMIA 63
              +   L+  +++ +          +LRS Q  A AG  L+ + FTT+ +YL +LQ  A
Sbjct: 88  LRPSGPALSGLLSLEAEENALPGFAEALRSYQEAAAAGTFLV-VEFTTLADYLHLLQAAA 146

Query: 64  VSSRSLGPCSMFYLAAAVSDFYVPWKSMAEHKIQSGSGPLDMQLLQVPKMLSVLRKEWAP 123
            +   LGP +MFYLAAAVSDFYVP   M EHKI+S  GPL + +  VPK+LS L K+WAP
Sbjct: 147 QALNPLGPSAMFYLAAAVSDFYVPVSEMPEHKIESSGGPLQITMKMVPKLLSPLVKDWAP 206

Query: 124 MAFCISFKLETDAEILLEKADMARKKYGMHAVVANELLSRKEQVVVVTNNG--KIPVYRD 181
            AF ISFKLETD  I++ +A  A + Y    VVAN L SR+  V++VT +   K+ +  +
Sbjct: 207 KAFIISFKLETDPAIVINRARKALEIYQHQVVVANILESRQSFVLIVTKDSETKLLLSEE 266

Query: 182 KTSSDSDVEKPLTKLLVDRHSVYI 205
           +     ++E+ +   L  RH+ +I
Sbjct: 267 EIEKGVEIEEKIVDNLQSRHTAFI 290

>d1u7za_ c.72.3.1 (A:) Coenzyme A biosynthesis bifunctional protein CoaBC, phosphopantothenoylcysteine synthase domain (CoaB) {Escherichia coli [TaxId: 562]} Length = 223

class: Alpha and beta proteins (a/b)
fold: Ribokinase-like
superfamily: CoaB-like
family: CoaB-like
domain: Coenzyme A biosynthesis bifunctional protein CoaBC, phosphopantothenoylcysteine synthase domain (CoaB)
species: Escherichia coli [TaxId: 562]

 Score = 36.7 bits (84), Expect = 0.001
 Identities = 28/161 (17%), Positives = 64/161 (39%), Gaps = 13/161 (8%)

Query: 48  PFTTIFEYLQMLQMIAVSSRSLGPCSMFYLAAAVSDFYVPWKSMAEHKIQSGSG-PLDMQ 106
           PF    + +  L+M A  + S+   ++F   AAV+D+     +  + K Q+  G  L ++
Sbjct: 62  PFVKRVDVMTALEMEAAVNASVQQQNIFIGCAAVADYRAATVAPEKIKKQATQGDELTIK 121

Query: 107 LLQVPKMLSVLRKEWAPMAFCISFKLETDAEILLEKADMARKKYGMHAVVANELL----- 161
           +++ P +++ +        + + F  ET+      +    RK   +  + AN++      
Sbjct: 122 MVKNPDIVAGVAALKDHRPYVVGFAAETNNVEEYARQKRIRK--NLDLICANDVSQPTQG 179

Query: 162 --SRKEQVVVVTNNGKIPVYRDKTSSDSDVEKPLTKLLVDR 200
             S    + +   +G   +          + + L   +V R
Sbjct: 180 FNSDNNALHLFWQDGDKVL---PLERKELLGQLLLDEIVTR 217

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	210
d1p9oa_	290	Phosphopantothenoylcysteine synthetase {Human (Hom	100.0
d1u7za_	223	Coenzyme A biosynthesis bifunctional protein CoaBC	100.0

>d1p9oa_ c.72.3.1 (A:) Phosphopantothenoylcysteine synthetase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Ribokinase-like
superfamily: CoaB-like
family: CoaB-like
domain: Phosphopantothenoylcysteine synthetase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=5.8e-42  Score=300.37  Aligned_cols=194  Identities=41%  Similarity=0.622  Sum_probs=157.0

Q ss_pred             CCCcEEEechhhhhHHHHHHHHHHHHHhHHCCcccccCceeeeeHHhHHHHHHHHhhhcCCCCEEEEecccCCcccCCCC
Q 028319           11 LASHIAVLSLMMRFLNVLRSLRSQQFKAVAGGLLLKLPFTTIFEYLQMLQMIAVSSRSLGPCSMFYLAAAVSDFYVPWKS   90 (210)
Q Consensus        11 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~l~~p~~tv~~v~sa~em~~~~~~~~~~~di~I~aAAVSDf~p~~~~   90 (210)
                      ..+.+.|.+ .++..+.+.+.+++|+++.....+..++|.|+.+|..++++.+..++..+.+|++|||||||||+||...
T Consensus        95 ~~~~~~v~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~T~~e~~~~l~~~~~~~~~~~~~d~~i~aAAVsDf~~~~~~  173 (290)
T d1p9oa_          95 LSGLLSLEA-EENALPGFAEALRSYQEAAAAGTFLVVEFTTLADYLHLLQAAAQALNPLGPSAMFYLAAAVSDFYVPVSE  173 (290)
T ss_dssp             CCSEEEEEE-ETTTSTTHHHHHHHHHHHHHHTCEEEEEECBHHHHHHHHHHHHHHHGGGGGGEEEEECSBCCSEECC---
T ss_pred             cccceeecc-hhhHHHHHHHHHHHhhhhcccCCceEEEEeeHHHHHHHHHHHHhhccccccchHHHHHhccchhhccchh
Confidence            345667776 6789999999999999999999999999999999999999999999999999999999999999997666


Q ss_pred             ccccccCCCCCCceEEEecCchHHHHHhhccCCCeeEEEEeeecCchHHHHHHHHHHHHcCCCEEEeecccccceEEEEE
Q 028319           91 MAEHKIQSGSGPLDMQLLQVPKMLSVLRKEWAPMAFCISFKLETDAEILLEKADMARKKYGMHAVVANELLSRKEQVVVV  170 (210)
Q Consensus        91 ~~~~KIkk~~~~l~L~L~~~PkIL~~i~~~~~p~~~lVGFkaEt~~e~li~~A~~kL~~k~~D~IVaN~v~~~~n~v~li  170 (210)
                      ..++||+|+++.++|+|++|||||+.|++.|+|++++|||||||+.++++++|++||.+||||+||||++++++|+|+|+
T Consensus       174 ~~k~Ki~s~~~~l~l~L~~~PdIL~~l~~~~~p~~~~VGFkaEtd~e~l~~~A~~kL~~k~~D~IvaN~l~~~~n~v~li  253 (290)
T d1p9oa_         174 MPEHKIESSGGPLQITMKMVPKLLSPLVKDWAPKAFIISFKLETDPAIVINRARKALEIYQHQVVVANILESRQSFVLIV  253 (290)
T ss_dssp             -----------CEEEECEECGGGGSCCGGGTCTTSEEEEEECCCCHHHHHHHHHHHHHHHCCSEEEEEC------CEEEE
T ss_pred             hhhhcccccccchhhhhccChHHHHHHHHhhCCCceEEEEEEecChHHHHHHHHHHHHHcCCCEEEEecCCCCCcEEEEE
Confidence            67788888777899999999999999998888899999999999877899999999999999999999999999999999


Q ss_pred             eCCCeeeecCCCC--CChHHHHHHHHHHHHHHHHHHH
Q 028319          171 TNNGKIPVYRDKT--SSDSDVEKPLTKLLVDRHSVYI  205 (210)
Q Consensus       171 ~~~~~~~~~~~~K--~~~~eiA~~I~d~i~~~~~~~~  205 (210)
                      +++|...+...+|  ....+||..|++.|.++|++||
T Consensus       254 ~~d~~~~~~~~~~~~~~~~eIa~~Ii~~i~~~~~~~~  290 (290)
T d1p9oa_         254 TKDSETKLLLSEEEIEKGVEIEEKIVDNLQSRHTAFI  290 (290)
T ss_dssp             ETTEEEEECCCHHHHHTTCCHHHHHHHHHHHHHHHHC
T ss_pred             eCCCcEEecccChhhhhHHHHHHHHHHHHHHHHHhhC
Confidence            9999776655443  0013699999999999999986

>d1u7za_ c.72.3.1 (A:) Coenzyme A biosynthesis bifunctional protein CoaBC, phosphopantothenoylcysteine synthase domain (CoaB) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Ribokinase-like
superfamily: CoaB-like
family: CoaB-like
domain: Coenzyme A biosynthesis bifunctional protein CoaBC, phosphopantothenoylcysteine synthase domain (CoaB)
species: Escherichia coli [TaxId: 562]

Probab=100.00  E-value=6.5e-37  Score=258.88  Aligned_cols=159  Identities=19%  Similarity=0.272  Sum_probs=141.4

Q ss_pred             hHHCCcccccCc-eeeeeHHhHHHHHHHHhhhcCCCCEEEEecccCCcccCCCCccccccCCC---CCCceEEEecCchH
Q 028319           38 AVAGGLLLKLPF-TTIFEYLQMLQMIAVSSRSLGPCSMFYLAAAVSDFYVPWKSMAEHKIQSG---SGPLDMQLLQVPKM  113 (210)
Q Consensus        38 ~i~~~~~l~~p~-~tv~~v~sa~em~~~~~~~~~~~di~I~aAAVSDf~p~~~~~~~~KIkk~---~~~l~L~L~~~PkI  113 (210)
                      +|+||.....|. ..+..+.++.+|.+++++.++.+|++||+||||||+|  +....+|+|+.   +..++|+|+|||||
T Consensus        51 li~g~~~~~~p~~~~~~~~~t~~~m~~~~~~~~~~~D~~i~aAAvsDf~~--~~~~~~k~Kk~~~~~~~l~L~L~~tpdI  128 (223)
T d1u7za_          51 LVSGPVSLPTPPFVKRVDVMTALEMEAAVNASVQQQNIFIGCAAVADYRA--ATVAPEKIKKQATQGDELTIKMVKNPDI  128 (223)
T ss_dssp             EEECSCCCCCCTTEEEEECCSHHHHHHHHHHHGGGCSEEEECCBCCSEEE--SSCCSSCC-------CEEEEEEEECCCH
T ss_pred             hhhcccccCcccccccceehhhHHHHHHHHhhhccceeEeeeechhhhhh--hhhhhhhcccccccccccceeeecCHHH
Confidence            489999888775 7999999999999999999999999999999999999  76666666653   23589999999999


Q ss_pred             HHHHhhccCCCeeEEEEeeecCchHHHHHHHHHHHHcCCCEEEeeccc-------ccceEEEEEeCCCeeeecCCCCCCh
Q 028319          114 LSVLRKEWAPMAFCISFKLETDAEILLEKADMARKKYGMHAVVANELL-------SRKEQVVVVTNNGKIPVYRDKTSSD  186 (210)
Q Consensus       114 L~~i~~~~~p~~~lVGFkaEt~~e~li~~A~~kL~~k~~D~IVaN~v~-------~~~n~v~li~~~~~~~~~~~~K~~~  186 (210)
                      |+.|++.+.+++++|||||||++  ++++|++||.+|||||||||+++       +++|+++||+++|.+.++.++|   
T Consensus       129 L~~l~~~k~~~~~~VGFaaEt~~--l~~~A~~Kl~~K~~D~IvAN~v~~~~~~fgsd~n~v~ii~~~~~~~~~~~sK---  203 (223)
T d1u7za_         129 VAGVAALKDHRPYVVGFAAETNN--VEEYARQKRIRKNLDLICANDVSQPTQGFNSDNNALHLFWQDGDKVLPLERK---  203 (223)
T ss_dssp             HHHHHHCSSSCCEEEEEEEESSS--HHHHHHHHHHHHTCSEEEEEECSSTTSSTTSSEEEEEEEETTEEEEEEEEEH---
T ss_pred             HHHHHhhccCCceEEEEeecccc--hhhHHHHHHHhcCCCEEEeecccCCCCCcCCCceEEEEEECCCeEEcCCCCH---
Confidence            99998877777899999999997  99999999999999999999986       4889999999999888899999   


Q ss_pred             HHHHHHHHHHHHHHHHH
Q 028319          187 SDVEKPLTKLLVDRHSV  203 (210)
Q Consensus       187 ~eiA~~I~d~i~~~~~~  203 (210)
                      .++|+.|+++|.+++++
T Consensus       204 ~~iA~~Il~~I~~~~~~  220 (223)
T d1u7za_         204 ELLGQLLLDEIVTRYDE  220 (223)
T ss_dssp             HHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHH
Confidence            99999999999988765