Citrus Sinensis ID: 028326

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210
Protein Sequence
MRIQCNVCEAAEAKVLCCADEAALCWECDDKVHAANKLASKHQRVPLSSSSTQMPKCDICQETSGFFFCLQDRALLCRKCDVAIHTANSYVSAHQRFLLTGVKVALEPADPGASSSSIKSLSGENILDTKSHSLSRRDALMPVAAECKEVLPASSGGVGGFAMNKVSFAGGSAAGSTPSWHMDDFLALPELNQNYSFMDNGSSKWQAWRL
Secondary Structure (PSIPRED)
cccccccccccccEEEccccccccHHHHHHHHHccccccccccEEEccccccccccccccccccccEEcccccccccccccccccccccccccccEEEEccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHccccc
Secondary Structure Prediction (SSPRO)
ccccccHHccccEEEEEcccHHHHHHHHHHHHHHHHHHHHcccEEEcccccccccccHHHccccEEEEEHHHHHHHHHHcccccccccHHHHHcccEEEEEEEEccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHcccccccHHHHccccccccccccccccccHHHHHcc
Coil and Loop (DISEMBL)
MRIQCNVCEAAEAKVLCCADEAALCWECDDKVHAANKLAskhqrvplsssstqmpkcdicqetsgfffCLQDRALLCRKCDVAIHTANSYVSAHQRFLLTGVKvalepadpgassssikslsgenildtkshslsrrdALMPVAAECKevlpassggvggfaMNKVsfaggsaagstpswhmddflalpelnqnysfmdngsskwQAWRL
Flexible Loop (DISEMBL)
mriqcnvcEAAEAKVLCCADEAALCWECDDKVHAANKLASKhqrvplsssstqmpKCDICQETSGFFFCLQDRALLCRKCDVAIHTANSYVSAHQRFLLTGVKVALEPADPGassssikslsgeniLDTKSHSLSRRDALMPVAAECKEVLPASSGGVGGFAMNKVSFAGGSAAGSTPSWHMDDFLALPELNQnysfmdngsskwqawrl
Low Complexity Region (SEG)
MRIQCNVCEAAEAKVLCCADEAALCWECDDKVHAANKLASKHQRVPLSSSSTQMPKCDICQETSGFFFCLQDRALLCRKCDVAIHTANSYVSAHQRFLLTGVKVALEPADPGAssssikslsGENILDTKSHSLSRRDALMPVAAECKEVLPASSGGVGGFAMNKVSFAGGSAAGSTPSWHMDDFLALPELNQNYSFMDNGSSKWQAWRL
Disordered region (IsUnstruct)
**IQCNVCEAAEAKVLCCADEAALCWECDDKVHA**********************CDICQETSGFFFCLQDRALLCRKCDVAIHTANSYVSAHQRFLLTGVKVAL****************************************CKEVL****GGVGGFAMNKVSFAG*******PSWHMDDFLALPELNQNYSF*************
Disordered Region (DISOPRED)
MRIQCNVCEAAEAKVLCCADEAALCWECDDKVHAANKLASKHQRVPLSSSSTQMPKCDICQETSGFFFCLQDRALLCRKCDVAIHTAN***SAHQRFLLTG******************************************************************************WHMDDFLALPELNQN******GSSKW*AWRL
Disordered Region (DISEMBL)
MRIQCNVCEAAEAKVLCCADEAALCWECDDKVHAANK*****************PKCDICQETSGFFFCLQDRALLCRKCDVAIHTANSYVSAHQRFLLTGVKVALEP************LSGENILDTKSHSLSRRDALMPVAAECKEVLPASSGGVGGFAMNKVSFAGGSAAGSTPSWHMDDFLALPELNQNYSFMDNG*********
Disordered Region (DISPRO)
*RIQCNVCEAAEAKVLCCADEAALCWECDDKVHAANKLASKHQRVPLSSSSTQMPKCDICQETSGFFFCLQDRALLCRKCDVAIHTANSYVSAHQRFLLTGVKVALE************************************************************FAGGSAAGSTPSWHMDDFLALPELNQNYSF**NGSSKW***RL
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MRIQCNVCEAAEAKVLCCADEAALCWECDDKVHAANKLASKHQRVPLSSSSTQMPKCDICQETSGFFFCLQDRALLCRKCDVAIHTANSYVSAHQRFLLTGVKVALEPADPGASSSSIKSLSGENILDTKSHSLSRRDALMPVAAECKEVLPASSGGVGGFAMNKVSFAGGSAAGSTPSWHMDDFLALPELNQNYSFMDNGSSKWQAWRL
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	210	2.2.26 [Sep-21-2011]
Q9SYM2	299	Probable salt tolerance-l	no	no	0.966	0.678	0.539	4e-59
Q96288	248	Salt tolerance protein OS	no	no	0.504	0.427	0.679	4e-38
Q9SID1	238	Salt tolerance-like prote	no	no	0.652	0.575	0.537	2e-35
Q9LQZ7	331	Probable salt tolerance-l	no	no	0.923	0.586	0.401	2e-32
Q0IGM7	242	B-box zinc finger protein	no	no	0.557	0.483	0.554	5e-30
Q9SK53	294	Zinc finger protein CONST	no	no	0.538	0.384	0.368	2e-15
O50055	355	Zinc finger protein CONST	no	no	0.423	0.250	0.418	1e-14
Q940T9	362	Zinc finger protein CONST	no	no	0.414	0.240	0.416	7e-14
Q96502	347	Zinc finger protein CONST	no	no	0.395	0.239	0.423	9e-14
Q39057	373	Zinc finger protein CONST	no	no	0.409	0.230	0.378	9e-13

>sp|Q9SYM2|STHY_ARATH Probable salt tolerance-like protein At1g78600 OS=Arabidopsis thaliana GN=At1g78600 PE=1 SV=2

 Score =  227 bits (579), Expect = 4e-59,   Method: Compositional matrix adjust.
 Identities = 115/213 (53%), Positives = 146/213 (68%), Gaps = 10/213 (4%)

Query: 1   MRIQCNVCEAAEAKVLCCADEAALCWECDDKVHAANKLASKHQRVPLSSSSTQMPKCDIC 60
           M+IQCNVCEAAEA VLCCADEAALCW CD+K+HAANKLA KHQRVPLS+S++ +PKCDIC
Sbjct: 1   MKIQCNVCEAAEATVLCCADEAALCWACDEKIHAANKLAGKHQRVPLSASASSIPKCDIC 60

Query: 61  QETSGFFFCLQDRALLCRKCDVAIHTANSYVSAHQRFLLTGVKVALEPADPGASSSSIKS 120
           QE SGFFFCLQDRALLCRKCDVAIHT N +VSAHQRFLLTG+KV LE  D G S+ S  +
Sbjct: 61  QEASGFFFCLQDRALLCRKCDVAIHTVNPHVSAHQRFLLTGIKVGLESIDTGPSTKSSPT 120

Query: 121 LSGENILDTKS--HSLSRRDALMPVAAECKEVLPASSGGVGGFAMNKVS------FAGGS 172
            + +  ++TK    S+     +       ++      G + G  +N  +       + GS
Sbjct: 121 -NDDKTMETKPFVQSIPEPQKMAFDHHHHQQQQEQQEGVIPGTKVNDQTSTKLPLVSSGS 179

Query: 173 AAGSTPSWHMDDFLALPELNQNYSFMD-NGSSK 204
             GS P W +++   L + +Q+Y +M+ NGSSK
Sbjct: 180 TTGSIPQWQIEEIFGLTDFDQSYEYMENNGSSK 212

Arabidopsis thaliana (taxid: 3702)

>sp|Q96288|STO_ARATH Salt tolerance protein OS=Arabidopsis thaliana GN=STO PE=1 SV=1

 Score =  157 bits (398), Expect = 4e-38,   Method: Compositional matrix adjust.
 Identities = 72/106 (67%), Positives = 88/106 (83%)

Query: 1   MRIQCNVCEAAEAKVLCCADEAALCWECDDKVHAANKLASKHQRVPLSSSSTQMPKCDIC 60
           M+IQC+VCE A A V+CCADEAALC +CD ++HAANKLASKHQR+ L+S ST+ P+CDIC
Sbjct: 1   MKIQCDVCEKAPATVICCADEAALCPQCDIEIHAANKLASKHQRLHLNSLSTKFPRCDIC 60

Query: 61  QETSGFFFCLQDRALLCRKCDVAIHTANSYVSAHQRFLLTGVKVAL 106
           QE + F FC++DRALLCR CD +IH ANS  + HQRFL TG+KVAL
Sbjct: 61  QEKAAFIFCVEDRALLCRDCDESIHVANSRSANHQRFLATGIKVAL 106

May act as a transcription factor in the salt-stress response.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9SID1|STH_ARATH Salt tolerance-like protein OS=Arabidopsis thaliana GN=STH PE=1 SV=2

 Score =  149 bits (375), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 78/145 (53%), Positives = 97/145 (66%), Gaps = 8/145 (5%)

Query: 1   MRIQCNVCEAAEAKVLCCADEAALCWECDDKVHAANKLASKHQRVPLSSSSTQMPKCDIC 60
           M+IQC+VCE A A ++CCADEAALC +CD +VHAANKLASKHQR+ L S ST+ P CDIC
Sbjct: 1   MKIQCDVCEKAPATLICCADEAALCAKCDVEVHAANKLASKHQRLFLDSLSTKFPPCDIC 60

Query: 61  QETSGFFFCLQDRALLCRKCDVAIHTANSYVSAHQRFLLTGVKVALEPADPGASSSSIKS 120
            E + F FC++DRALLCR CD A H  N+  + HQRFL TG++VAL       SS+S   
Sbjct: 61  LEKAAFIFCVEDRALLCRDCDEATHAPNTRSANHQRFLATGIRVAL-------SSTSCNQ 113

Query: 121 LSGENILD-TKSHSLSRRDALMPVA 144
              +N  D +   SLS+     P A
Sbjct: 114 EVEKNHFDPSNQQSLSKPPTQQPAA 138

Arabidopsis thaliana (taxid: 3702)

>sp|Q9LQZ7|STHX_ARATH Probable salt tolerance-like protein At1g75540 OS=Arabidopsis thaliana GN=At1g75540 PE=1 SV=1

 Score =  139 bits (349), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 88/219 (40%), Positives = 117/219 (53%), Gaps = 25/219 (11%)

Query: 1   MRIQCNVCEAAEAKVLCCADEAALCWECDDKVHAANKLASKHQRVPL---SSSSTQMPKC 57
           M+I+C+VC+  EA V C ADEA+LC  CD +VH ANKLASKH R  L   SSS+T  P C
Sbjct: 1   MKIRCDVCDKEEASVFCTADEASLCGGCDHQVHHANKLASKHLRFSLLYPSSSNTSSPLC 60

Query: 58  DICQETSGFFFCLQDRALLCRKCDVAIHTANSYVSAHQRFLLTGVKVALEPADPGASSSS 117
           DICQ+     FC QDRA+LC+ CD +IH AN +   H RFLLTGVK++       A+SS 
Sbjct: 61  DICQDKKALLFCQQDRAILCKDCDSSIHAANEHTKKHDRFLLTGVKLS-------ATSSV 113

Query: 118 IKSLSGENILDTKSHSLSRRDALMPVAAECKEVL--PASSGGVGGFAMNKVSFAGGSAAG 175
            K  S  +   + +   S   + +      K+ L  P  S  +  F+      A  +  G
Sbjct: 114 YKPTSKSSSSSSSNQDFSVPGSSISNPPPLKKPLSAPPQSNKIQPFSKINGGDASVNQWG 173

Query: 176 ST-----------PSWHMDDFL--ALPELNQNYSFMDNG 201
           ST           P WH++DFL  +LP    + S  D+G
Sbjct: 174 STSTISEYLMDTLPGWHVEDFLDSSLPTYGFSKSGDDDG 212

Arabidopsis thaliana (taxid: 3702)

>sp|Q0IGM7|BBX20_ARATH B-box zinc finger protein 20 OS=Arabidopsis thaliana GN=BBX20 PE=1 SV=1

 Score =  130 bits (328), Expect = 5e-30,   Method: Compositional matrix adjust.
 Identities = 66/119 (55%), Positives = 80/119 (67%), Gaps = 2/119 (1%)

Query: 1   MRIQCNVCEAAEAKVLCCADEAALCWECDDKVHAANKLASKHQRVPLSSSSTQ-MPKCDI 59
           M+I C VC+  EA V CCADEAALC  CD  VH ANKLA KH R  L+S + +  P CDI
Sbjct: 1   MKIWCAVCDKEEASVFCCADEAALCNGCDRHVHFANKLAGKHLRFSLTSPTFKDAPLCDI 60

Query: 60  CQETSGFFFCLQDRALLCRKCDVAIHTANSYVSAHQRFLLTGVKVALEP-ADPGASSSS 117
           C E     FC +DRA+LCR+CD+ IH AN +   H RFLLTGVK++  P A P AS+S+
Sbjct: 61  CGERRALLFCQEDRAILCRECDIPIHQANEHTKKHNRFLLTGVKISASPSAYPRASNSN 119

Arabidopsis thaliana (taxid: 3702)

>sp|Q9SK53|COL3_ARATH Zinc finger protein CONSTANS-LIKE 3 OS=Arabidopsis thaliana GN=COL3 PE=1 SV=1

 Score = 82.8 bits (203), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 45/122 (36%), Positives = 65/122 (53%), Gaps = 9/122 (7%)

Query: 5   CNVCEAAEAKVLCCADEAALCWECDDKVHAANKLASKHQRVPLSSSSTQMPKCDICQETS 64
           C+ C++  A + C AD A LC +CD K+H ANKLAS+H+RV L         C++C++  
Sbjct: 8   CDSCKSTAATLFCRADAAFLCGDCDGKIHTANKLASRHERVWL---------CEVCEQAP 58

Query: 65  GFFFCLQDRALLCRKCDVAIHTANSYVSAHQRFLLTGVKVALEPADPGASSSSIKSLSGE 124
               C  D A LC  CD  IH+AN     H+R  +T    A+ PA   +SS +     G 
Sbjct: 59  AHVTCKADAAALCVTCDRDIHSANPLSRRHERVPITPFYDAVGPAKSASSSVNFVDEDGG 118

Query: 125 NI 126
           ++
Sbjct: 119 DV 120

Arabidopsis thaliana (taxid: 3702)

>sp|O50055|COL1_ARATH Zinc finger protein CONSTANS-LIKE 1 OS=Arabidopsis thaliana GN=COL1 PE=1 SV=1

 Score = 80.1 bits (196), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 41/98 (41%), Positives = 52/98 (53%), Gaps = 9/98 (9%)

Query: 5   CNVCEAAEAKVLCCADEAALCWECDDKVHAANKLASKHQRVPLSSSSTQMPKCDICQETS 64
           C+ C +A   V C AD A LC  CD +VHAAN+LAS+H+RV +         C  C+   
Sbjct: 12  CDTCRSAACTVYCRADSAYLCSSCDAQVHAANRLASRHERVRV---------CQSCERAP 62

Query: 65  GFFFCLQDRALLCRKCDVAIHTANSYVSAHQRFLLTGV 102
             FFC  D A LC  CD  IH+AN     HQR  +  +
Sbjct: 63  AAFFCKADAASLCTTCDSEIHSANPLARRHQRVPILPI 100

Putative transcription factor that may be involved in the light input to the circadian clock but does not affect flowering time.

Arabidopsis thaliana (taxid: 3702)

>sp|Q940T9|COL4_ARATH Zinc finger protein CONSTANS-LIKE 4 OS=Arabidopsis thaliana GN=COL4 PE=2 SV=2

 Score = 77.4 bits (189), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 40/96 (41%), Positives = 53/96 (55%), Gaps = 9/96 (9%)

Query: 5   CNVCEAAEAKVLCCADEAALCWECDDKVHAANKLASKHQRVPLSSSSTQMPKCDICQETS 64
           C+ C++A A + C  D A LC  CD KVHAANKLAS+H RV +         C++C++  
Sbjct: 6   CDSCKSATAALYCRPDAAFLCLSCDSKVHAANKLASRHARVWM---------CEVCEQAP 56

Query: 65  GFFFCLQDRALLCRKCDVAIHTANSYVSAHQRFLLT 100
               C  D A LC  CD  IH+AN     H+R  +T
Sbjct: 57  AHVTCKADAAALCVTCDRDIHSANPLARRHERVPVT 92

Arabidopsis thaliana (taxid: 3702)

>sp|Q96502|COL2_ARATH Zinc finger protein CONSTANS-LIKE 2 OS=Arabidopsis thaliana GN=COL2 PE=1 SV=1

 Score = 77.0 bits (188), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 39/92 (42%), Positives = 49/92 (53%), Gaps = 9/92 (9%)

Query: 5  CNVCEAAEAKVLCCADEAALCWECDDKVHAANKLASKHQRVPLSSSSTQMPKCDICQETS 64
          C+ C +A   V C AD A LC  CD +VHAAN++AS+H+RV +         C  C+   
Sbjct: 16 CDTCRSAACTVYCEADSAYLCTTCDARVHAANRVASRHERVRV---------CQSCESAP 66

Query: 65 GFFFCLQDRALLCRKCDVAIHTANSYVSAHQR 96
            F C  D A LC  CD  IH+AN     HQR
Sbjct: 67 AAFLCKADAASLCTACDAEIHSANPLARRHQR 98

Putative transcription factor. Does not affect flowering time.

Arabidopsis thaliana (taxid: 3702)

>sp|Q39057|CONS_ARATH Zinc finger protein CONSTANS OS=Arabidopsis thaliana GN=CO PE=1 SV=1

 Score = 73.6 bits (179), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 36/95 (37%), Positives = 50/95 (52%), Gaps = 9/95 (9%)

Query: 5   CNVCEAAEAKVLCCADEAALCWECDDKVHAANKLASKHQRVPLSSSSTQMPKCDICQETS 64
           C+ C +    V C AD A LC  CD +VH+AN++AS+H+RV +         C+ C+   
Sbjct: 20  CDTCRSNACTVYCHADSAYLCMSCDAQVHSANRVASRHKRVRV---------CESCERAP 70

Query: 65  GFFFCLQDRALLCRKCDVAIHTANSYVSAHQRFLL 99
             F C  D A LC  CD  +H+AN     HQR  +
Sbjct: 71  AAFLCEADDASLCTACDSEVHSANPLARRHQRVPI 105

Putative transcription factor that acts in the long day flowering pathway and may mediate between the circadian clock and the control of flowering. Plays a role in the regulation of flowering time by acting on 'SUPPRESSOR OF OVEREXPRESSION OF CO1', 'TERMINAL FLOWER 1' and 'FLOWERING LOCUS T'. Also regulates P5CS2 and ACS10 (involved in proline and ethylene biosynthesis, respectively).

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	210
356544134	374	PREDICTED: probable salt tolerance-like	0.980	0.550	0.676	7e-77
224114744	298	predicted protein [Populus trichocarpa]	0.971	0.684	0.726	1e-76
356544136	294	PREDICTED: probable salt tolerance-like	0.933	0.666	0.693	3e-76
225461798	293	PREDICTED: probable salt tolerance-like	0.995	0.713	0.679	1e-75
356549614	293	PREDICTED: probable salt tolerance-like	0.995	0.713	0.676	5e-74
255567122	290	zinc finger protein, putative [Ricinus c	0.966	0.7	0.710	1e-73
449438905	297	PREDICTED: probable salt tolerance-like	0.995	0.703	0.622	5e-66
302398743	289	COL domain class transcription factor [M	0.914	0.664	0.590	4e-64
356530643	292	PREDICTED: probable salt tolerance-like	0.980	0.705	0.633	2e-61
297839731	290	zinc finger (B-box type) family protein	0.957	0.693	0.592	5e-60

>gi|356544134|ref|XP_003540510.1| PREDICTED: probable salt tolerance-like protein At1g78600-like isoform 1 [Glycine max]

 Score =  292 bits (747), Expect = 7e-77,   Method: Compositional matrix adjust.
 Identities = 142/210 (67%), Positives = 167/210 (79%), Gaps = 4/210 (1%)

Query: 1   MRIQCNVCEAAEAKVLCCADEAALCWECDDKVHAANKLASKHQRVPLSSSSTQMPKCDIC 60
           M+IQCNVCEAAEAKVLCCADEA LCWECD+KVHAANKLASKHQRVPLS+SS+ MPKCDIC
Sbjct: 83  MKIQCNVCEAAEAKVLCCADEAGLCWECDEKVHAANKLASKHQRVPLSTSSSHMPKCDIC 142

Query: 61  QETSGFFFCLQDRALLCRKCDVAIHTANSYVSAHQRFLLTGVKVALEPADPGASSSSIKS 120
           QE  G+FFCL+DRALLCRKCDVAIHTAN+YVS HQRFLLTGV+V LE  DPGASS+S+KS
Sbjct: 143 QEALGYFFCLEDRALLCRKCDVAIHTANAYVSGHQRFLLTGVRVGLEATDPGASSTSLKS 202

Query: 121 LSGENILDTKSHSLSRRDALMPVAAECKEVLPASSGGVGGFAMNKVSFAGGSAAGSTPSW 180
            SGE + D+   S+SR+ +  P  +   EVLPA  GGVG F   KVSF GGS AG+   W
Sbjct: 203 DSGEKVSDS---SVSRKVSTAPQPSNYNEVLPAEVGGVGEFPSAKVSFGGGSTAGNISQW 259

Query: 181 HMDDFLALPELNQNYSFMDNGSSKWQAWRL 210
            +D+F+ L E +QNY +M+ GSS+    +L
Sbjct: 260 TIDEFIGLNEFSQNYDYME-GSSRADGGKL 288

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224114744|ref|XP_002316844.1| predicted protein [Populus trichocarpa] gi|222859909|gb|EEE97456.1| predicted protein [Populus trichocarpa]

 Score =  291 bits (745), Expect = 1e-76,   Method: Compositional matrix adjust.
 Identities = 149/205 (72%), Positives = 170/205 (82%), Gaps = 1/205 (0%)

Query: 1   MRIQCNVCEAAEAKVLCCADEAALCWECDDKVHAANKLASKHQRVPLSSSSTQMPKCDIC 60
           M+IQCNVCEAAEAKVLCCADEAALCW CD+KVHAANKLASKHQR+PLS+SS QMPKCDIC
Sbjct: 1   MKIQCNVCEAAEAKVLCCADEAALCWTCDEKVHAANKLASKHQRIPLSTSSPQMPKCDIC 60

Query: 61  QETSGFFFCLQDRALLCRKCDVAIHTANSYVSAHQRFLLTGVKVALEPADPGASSSSIKS 120
           QET+GFFFCL+DRALLCRKCDVAIHTAN++VS HQRFLLTGVKV LEP DPGASSSS KS
Sbjct: 61  QETAGFFFCLEDRALLCRKCDVAIHTANTHVSVHQRFLLTGVKVGLEPTDPGASSSSGKS 120

Query: 121 LSGE-NILDTKSHSLSRRDALMPVAAECKEVLPASSGGVGGFAMNKVSFAGGSAAGSTPS 179
            SGE   L+TKS  +SRR  L+P+A  C +V   +  GVG F   K+ ++GGSA  S   
Sbjct: 121 PSGEKKTLETKSRPVSRRGTLLPLANPCNQVSTVNVCGVGDFGPAKLPYSGGSATSSISQ 180

Query: 180 WHMDDFLALPELNQNYSFMDNGSSK 204
           WH+D+FL LPE NQNY ++DNGSSK
Sbjct: 181 WHIDEFLDLPEFNQNYGYIDNGSSK 205

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356544136|ref|XP_003540511.1| PREDICTED: probable salt tolerance-like protein At1g78600-like isoform 2 [Glycine max]

 Score =  290 bits (742), Expect = 3e-76,   Method: Compositional matrix adjust.
 Identities = 138/199 (69%), Positives = 161/199 (80%), Gaps = 3/199 (1%)

Query: 1   MRIQCNVCEAAEAKVLCCADEAALCWECDDKVHAANKLASKHQRVPLSSSSTQMPKCDIC 60
           M+IQCNVCEAAEAKVLCCADEA LCWECD+KVHAANKLASKHQRVPLS+SS+ MPKCDIC
Sbjct: 83  MKIQCNVCEAAEAKVLCCADEAGLCWECDEKVHAANKLASKHQRVPLSTSSSHMPKCDIC 142

Query: 61  QETSGFFFCLQDRALLCRKCDVAIHTANSYVSAHQRFLLTGVKVALEPADPGASSSSIKS 120
           QE  G+FFCL+DRALLCRKCDVAIHTAN+YVS HQRFLLTGV+V LE  DPGASS+S+KS
Sbjct: 143 QEALGYFFCLEDRALLCRKCDVAIHTANAYVSGHQRFLLTGVRVGLEATDPGASSTSLKS 202

Query: 121 LSGENILDTKSHSLSRRDALMPVAAECKEVLPASSGGVGGFAMNKVSFAGGSAAGSTPSW 180
            SGE + D+   S+SR+ +  P  +   EVLPA  GGVG F   KVSF GGS AG+   W
Sbjct: 203 DSGEKVSDS---SVSRKVSTAPQPSNYNEVLPAEVGGVGEFPSAKVSFGGGSTAGNISQW 259

Query: 181 HMDDFLALPELNQNYSFMD 199
            +D+F+ L E +QNY +M+
Sbjct: 260 TIDEFIGLNEFSQNYDYME 278

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225461798|ref|XP_002283666.1| PREDICTED: probable salt tolerance-like protein At1g78600 [Vitis vinifera] gi|302142816|emb|CBI20111.3| unnamed protein product [Vitis vinifera]

 Score =  288 bits (736), Expect = 1e-75,   Method: Compositional matrix adjust.
 Identities = 144/212 (67%), Positives = 166/212 (78%), Gaps = 3/212 (1%)

Query: 1   MRIQCNVCEAAEAKVLCCADEAALCWECDDKVHAANKLASKHQRVPLSSSSTQMPKCDIC 60
           M+IQCNVCEAAEA VLCCADEAALCW CD+KVHAANKLASKHQRVPLS+SS+QMPKCDIC
Sbjct: 1   MKIQCNVCEAAEANVLCCADEAALCWACDEKVHAANKLASKHQRVPLSTSSSQMPKCDIC 60

Query: 61  QETSGFFFCLQDRALLCRKCDVAIHTANSYVSAHQRFLLTGVKVALEPADPGASSSSIKS 120
           QET G+FFCL+DRALLCRKCDV+IHTAN+YVSAHQRFLLTGVKV LEP  PG+SSS  KS
Sbjct: 61  QETVGYFFCLEDRALLCRKCDVSIHTANTYVSAHQRFLLTGVKVGLEPTQPGSSSSMGKS 120

Query: 121 -LSGENILDTKSHSLSRRDALMPVAAECKEVLPASSGGVGGFAMNKVSFAGGSAAG-STP 178
            L G++  +T+S S SRR A MP+  +  + L   +GG G F   KVSFAGGS +  S P
Sbjct: 121 NLVGKHS-ETESPSASRRGAPMPLTCDYNKTLSIQAGGAGDFVPTKVSFAGGSGSTESIP 179

Query: 179 SWHMDDFLALPELNQNYSFMDNGSSKWQAWRL 210
            WH+D+   L E NQ Y  MDNG+SK    +L
Sbjct: 180 QWHIDELFGLNEFNQTYDCMDNGTSKADIGKL 211

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356549614|ref|XP_003543187.1| PREDICTED: probable salt tolerance-like protein At1g78600-like [Glycine max]

 Score =  282 bits (722), Expect = 5e-74,   Method: Compositional matrix adjust.
 Identities = 142/210 (67%), Positives = 168/210 (80%), Gaps = 1/210 (0%)

Query: 1   MRIQCNVCEAAEAKVLCCADEAALCWECDDKVHAANKLASKHQRVPLSSSSTQMPKCDIC 60
           M+IQCNVCEAAEAKVLCCADEAALCWECD+KVHAANKLASKHQRVPLS+SS+ MPKCDIC
Sbjct: 1   MKIQCNVCEAAEAKVLCCADEAALCWECDEKVHAANKLASKHQRVPLSTSSSHMPKCDIC 60

Query: 61  QETSGFFFCLQDRALLCRKCDVAIHTANSYVSAHQRFLLTGVKVALEPADPGASSSSIKS 120
           QE  G+FFCL+DRALLCRKCDVAIHTAN+YVS HQRFLLTGV+V LE  DPGAS +S+KS
Sbjct: 61  QEALGYFFCLEDRALLCRKCDVAIHTANAYVSGHQRFLLTGVRVGLEAIDPGASLTSLKS 120

Query: 121 LSGENILDTKSHSLSRRDALMPVAAECKEVLPASSGGVGGFAMNKVSFAGGSAAGSTPSW 180
            SGE + DTKS S+SR+ + +P  +   EVLP   GGVG F   KVSF GGS  G+   W
Sbjct: 121 DSGEKVSDTKSSSVSRKVSTVPQPSNYNEVLPIEVGGVGEFPPAKVSFGGGSTDGNISQW 180

Query: 181 HMDDFLALPELNQNYSFMDNGSSKWQAWRL 210
            +D+F+ L E +Q+Y +M+ GSS+    +L
Sbjct: 181 TIDEFIGLNEFSQHYDYME-GSSRADGGKL 209

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255567122|ref|XP_002524543.1| zinc finger protein, putative [Ricinus communis] gi|223536217|gb|EEF37870.1| zinc finger protein, putative [Ricinus communis]

 Score =  281 bits (719), Expect = 1e-73,   Method: Compositional matrix adjust.
 Identities = 145/204 (71%), Positives = 160/204 (78%), Gaps = 1/204 (0%)

Query: 1   MRIQCNVCEAAEAKVLCCADEAALCWECDDKVHAANKLASKHQRVPLSSSSTQMPKCDIC 60
           M+IQCNVCEAAEA VLCCADEAALCW CD+KVHAANKLASKHQRVPLS+SS+ +P CDIC
Sbjct: 1   MKIQCNVCEAAEANVLCCADEAALCWGCDEKVHAANKLASKHQRVPLSTSSSHIPNCDIC 60

Query: 61  QETSGFFFCLQDRALLCRKCDVAIHTANSYVSAHQRFLLTGVKVALEPADPGASSSSIKS 120
           QET+GFFFCL+DRALLCRKCDVAIHTAN+YVS HQRFLLTGVKV LEP D GASSSS KS
Sbjct: 61  QETAGFFFCLEDRALLCRKCDVAIHTANAYVSGHQRFLLTGVKVGLEPTDLGASSSSGKS 120

Query: 121 LSGENILDTKSHSLSRRDALMPVAAECKEVLPASSGGVGGFAMNKVSFAGGSAAGSTPSW 180
            S E   +  SHS+SRR   MPVA+     LPA   G G     KVS+ GG AAG  P W
Sbjct: 121 PSSEKTSEMISHSVSRRGNPMPVASPHNYALPAQVSGAGEVEQAKVSYFGG-AAGGMPPW 179

Query: 181 HMDDFLALPELNQNYSFMDNGSSK 204
            +D+FL L + NQNY  MDNGSSK
Sbjct: 180 QIDEFLGLSDFNQNYGNMDNGSSK 203

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449438905|ref|XP_004137228.1| PREDICTED: probable salt tolerance-like protein At1g78600-like [Cucumis sativus] gi|449483185|ref|XP_004156516.1| PREDICTED: probable salt tolerance-like protein At1g78600-like [Cucumis sativus]

 Score =  256 bits (653), Expect = 5e-66,   Method: Compositional matrix adjust.
 Identities = 132/212 (62%), Positives = 155/212 (73%), Gaps = 3/212 (1%)

Query: 1   MRIQCNVCEAAEAKVLCCADEAALCWECDDKVHAANKLASKHQRVPLSSSSTQMPKCDIC 60
           M+IQCNVCE AEA VLCCADEAALCW CD+K+HAANKLASKHQRVPLS SS+QMPKCDIC
Sbjct: 1   MKIQCNVCEMAEATVLCCADEAALCWACDEKIHAANKLASKHQRVPLSGSSSQMPKCDIC 60

Query: 61  QETSGFFFCLQDRALLCRKCDVAIHTANSYVSAHQRFLLTGVKVALEPADPGASSSSIKS 120
           QE SG+ FCL+DRALLCRKCDVAIHTAN+YV+ HQRFLLTGVKVALEP DP A SS  KS
Sbjct: 61  QEASGYIFCLEDRALLCRKCDVAIHTANTYVTGHQRFLLTGVKVALEPTDPVACSSMAKS 120

Query: 121 LSGENILDTKSHSLSRRDALMPVAAECKEVLPASSGGVGGFAMNK--VSFAGGSAAGSTP 178
            S E   + K    S R+  MP  +E    L +  GG   F  N+  ++ +G S +G   
Sbjct: 121 HSREKSTEIKIRPPSEREFAMPSPSELSRSL-SVLGGSEDFMANRTLLTGSGDSGSGGFS 179

Query: 179 SWHMDDFLALPELNQNYSFMDNGSSKWQAWRL 210
            W MD+ ++L   NQNY +MDNGSSK  + +L
Sbjct: 180 QWQMDELISLTGFNQNYGYMDNGSSKADSGKL 211

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|302398743|gb|ADL36666.1| COL domain class transcription factor [Malus x domestica]

 Score =  249 bits (637), Expect = 4e-64,   Method: Compositional matrix adjust.
 Identities = 130/220 (59%), Positives = 156/220 (70%), Gaps = 28/220 (12%)

Query: 1   MRIQCNVCEAAEAKVLCCADEAALCWECDDKVHAANKLASKHQRVPLSSSSTQMPKCDIC 60
           M+IQCNVCEAAEA VLCCADEAALCW CD+KVH ANKLASKHQRVPL SS   MPKCDIC
Sbjct: 1   MKIQCNVCEAAEANVLCCADEAALCWACDEKVHKANKLASKHQRVPLCSS--HMPKCDIC 58

Query: 61  QETSGFFFCLQDRALLCRKCDVAIHTANSYVSAHQRFLLTGVKVALEPADP--------- 111
           QE  G+FFCL+DRALLCRKCDV++HTANS+VSAH+RFLLTG+KV  EPA+P         
Sbjct: 59  QEAVGYFFCLEDRALLCRKCDVSVHTANSFVSAHRRFLLTGIKVGPEPAEPDSGEGDGVC 118

Query: 112 -GASSSSIKSLSGENILDTKSHSLSRRDALMPVAAECKEVLPASSGGVGGFAMNKVSFAG 170
            GASSS++K  SG       S S+SR +   P+  ECK   P   G         +SF G
Sbjct: 119 VGASSSTMKLHSG-------SASVSRYETHNPLHVECKAAAPPGGG---------ISFTG 162

Query: 171 GSAAGSTPSWHMDDFLALPELNQNYSFMDNGSSKWQAWRL 210
           GSAAGS P  ++D+FL   +L+Q++ ++DNGSSK    +L
Sbjct: 163 GSAAGSVPQCYIDEFLGFSDLDQSFDYIDNGSSKADCSKL 202

Source: Malus x domestica

Species: Malus x domestica

Genus: Malus

Family: Rosaceae

Order: Rosales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356530643|ref|XP_003533890.1| PREDICTED: probable salt tolerance-like protein At1g78600-like [Glycine max]

 Score =  241 bits (614), Expect = 2e-61,   Method: Compositional matrix adjust.
 Identities = 133/210 (63%), Positives = 160/210 (76%), Gaps = 4/210 (1%)

Query: 1   MRIQCNVCEAAEAKVLCCADEAALCWECDDKVHAANKLASKHQRVPLSSSSTQMPKCDIC 60
           M+IQCNVCEAAEAKVLCCADEAALCWECD+KVHAANKLASKHQRVPLS S++ MPKCDIC
Sbjct: 1   MKIQCNVCEAAEAKVLCCADEAALCWECDEKVHAANKLASKHQRVPLSLSASHMPKCDIC 60

Query: 61  QETSGFFFCLQDRALLCRKCDVAIHTANSYVSAHQRFLLTGVKVALEPADPGASSSSIKS 120
           QE  G+FFCL+DRALLCR CDV+IHTAN+ VS HQRFLLTGV+V LE  + GASSSS+KS
Sbjct: 61  QEMVGYFFCLEDRALLCRNCDVSIHTANACVSDHQRFLLTGVRVGLEATERGASSSSVKS 120

Query: 121 LSGENILDTKSHSLSRRDALMPVAAECKEVLPASSGGVGGFAMNKVSFAGGSAAGSTPSW 180
            SGE + D KS S+SR  + +P  +   EVLP    GV  F  +  S   G  +G+   W
Sbjct: 121 QSGEKMSDAKSSSISRNVSSLPQPSNANEVLPLQMQGVEEFPPSNFS---GYTSGNVSQW 177

Query: 181 HMDDFLALPELNQNYSFMDNGSSKWQAWRL 210
            +++FL L EL+Q Y++MD GSSK  + +L
Sbjct: 178 PIEEFLGLNELSQYYNYMD-GSSKADSGKL 206

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297839731|ref|XP_002887747.1| zinc finger (B-box type) family protein [Arabidopsis lyrata subsp. lyrata] gi|297333588|gb|EFH64006.1| zinc finger (B-box type) family protein [Arabidopsis lyrata subsp. lyrata]

 Score =  236 bits (602), Expect = 5e-60,   Method: Compositional matrix adjust.
 Identities = 122/206 (59%), Positives = 147/206 (71%), Gaps = 5/206 (2%)

Query: 1   MRIQCNVCEAAEAKVLCCADEAALCWECDDKVHAANKLASKHQRVPLSSSSTQMPKCDIC 60
           M+IQCNVCEAAEA VLCCADEAALCW CD+KVHAANKLA KHQRVPLS SS+ +PKCDIC
Sbjct: 1   MKIQCNVCEAAEATVLCCADEAALCWACDEKVHAANKLAGKHQRVPLSVSSSSIPKCDIC 60

Query: 61  QETSGFFFCLQDRALLCRKCDVAIHTANSYVSAHQRFLLTGVKVALEPADPGASSSSIKS 120
           QE SGFFFCLQDRALLCRKCDVAIHT N +VSAHQRFLLTG+KV LE  D G S+ S  +
Sbjct: 61  QEASGFFFCLQDRALLCRKCDVAIHTVNPHVSAHQRFLLTGIKVGLESIDTGPSTKSSPT 120

Query: 121 LSGENILDTKSHSLSRRDALMPVAAECKEVLPASSGGVGGFAMNKVSFA-GGSAAGSTPS 179
            + +  ++TKS   S  +       + + VLP +   V      K+ FA  GS  GS P 
Sbjct: 121 -NDDKTMETKSFVQSIPEPQKMGFDQQQGVLPETK--VSDHTSTKLPFASSGSTTGSIPQ 177

Query: 180 WHMDDFLALPELNQNYSFMD-NGSSK 204
           W +++   L + +Q+Y +M+ NGSSK
Sbjct: 178 WQIEEIFGLTDFDQSYEYMENNGSSK 203

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	210
TAIR|locus:2061330	238	STH "salt tolerance homologue"	0.504	0.445	0.641	1.5e-37
TAIR|locus:2198841	248	STO "SALT TOLERANCE" [Arabidop	0.504	0.427	0.679	2.4e-37
TAIR|locus:2005624	331	BBX21 "B-box domain protein 21	0.957	0.607	0.391	9.5e-34
TAIR|locus:2122759	162	bbx23 "B-box domain protein 23	0.480	0.623	0.612	3.3e-31
TAIR|locus:2120207	242	BZS1 "BZS1" [Arabidopsis thali	0.909	0.789	0.415	6.9e-31
TAIR|locus:2050130	172	BBX18 "B-box domain protein 18	0.504	0.616	0.481	1.1e-23
TAIR|locus:2047246	294	COL3 "CONSTANS-like 3" [Arabid	0.457	0.326	0.4	3.7e-16
TAIR|locus:2143221	355	COL1 "CONSTANS-like 1" [Arabid	0.395	0.233	0.445	7e-16
UNIPROTKB|Q9FRZ7	342	Hd1 "Hd1 protein" [Oryza sativ	0.457	0.280	0.390	3.7e-15
TAIR|locus:2074587	347	COL2 "CONSTANS-like 2" [Arabid	0.395	0.239	0.423	3.9e-15

TAIR|locus:2061330 STH "salt tolerance homologue" [Arabidopsis thaliana (taxid:3702)]

 Score = 373 (136.4 bits), Expect = 1.5e-37, Sum P(2) = 1.5e-37
 Identities = 68/106 (64%), Positives = 83/106 (78%)

Query:     1 MRIQCNVCEAAEAKVLCCADEAALCWECDDKVHAANKLASKHQRVPLSSSSTQMPKCDIC 60
             M+IQC+VCE A A ++CCADEAALC +CD +VHAANKLASKHQR+ L S ST+ P CDIC
Sbjct:     1 MKIQCDVCEKAPATLICCADEAALCAKCDVEVHAANKLASKHQRLFLDSLSTKFPPCDIC 60

Query:    61 QETSGFFFCLQDRALLCRKCDVAIHTANSYVSAHQRFLLTGVKVAL 106
              E + F FC++DRALLCR CD A H  N+  + HQRFL TG++VAL
Sbjct:    61 LEKAAFIFCVEDRALLCRDCDEATHAPNTRSANHQRFLATGIRVAL 106

GO:0005622 "intracellular" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0008270 "zinc ion binding" evidence=IEA;ISS

GO:0019904 "protein domain specific binding" evidence=NAS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=TAS

GO:0005515 "protein binding" evidence=IPI

GO:0009744 "response to sucrose stimulus" evidence=RCA

GO:0010224 "response to UV-B" evidence=RCA

GO:0010264 "myo-inositol hexakisphosphate biosynthetic process" evidence=RCA

TAIR|locus:2198841 STO "SALT TOLERANCE" [Arabidopsis thaliana (taxid:3702)]

 Score = 401 (146.2 bits), Expect = 2.4e-37, P = 2.4e-37
 Identities = 72/106 (67%), Positives = 88/106 (83%)

Query:     1 MRIQCNVCEAAEAKVLCCADEAALCWECDDKVHAANKLASKHQRVPLSSSSTQMPKCDIC 60
             M+IQC+VCE A A V+CCADEAALC +CD ++HAANKLASKHQR+ L+S ST+ P+CDIC
Sbjct:     1 MKIQCDVCEKAPATVICCADEAALCPQCDIEIHAANKLASKHQRLHLNSLSTKFPRCDIC 60

Query:    61 QETSGFFFCLQDRALLCRKCDVAIHTANSYVSAHQRFLLTGVKVAL 106
             QE + F FC++DRALLCR CD +IH ANS  + HQRFL TG+KVAL
Sbjct:    61 QEKAAFIFCVEDRALLCRDCDESIHVANSRSANHQRFLATGIKVAL 106

GO:0005622 "intracellular" evidence=IEA

GO:0005634 "nucleus" evidence=ISM;IDA

GO:0008270 "zinc ion binding" evidence=IEA;ISS

GO:0005515 "protein binding" evidence=IPI

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0009416 "response to light stimulus" evidence=IEP

GO:0009640 "photomorphogenesis" evidence=IGI

GO:0080167 "response to karrikin" evidence=IEP

GO:0006096 "glycolysis" evidence=RCA

GO:0006833 "water transport" evidence=RCA

GO:0006972 "hyperosmotic response" evidence=RCA

GO:0007030 "Golgi organization" evidence=RCA

GO:0009266 "response to temperature stimulus" evidence=RCA

GO:0009651 "response to salt stress" evidence=IGI;RCA

GO:0009737 "response to abscisic acid stimulus" evidence=RCA

GO:0046686 "response to cadmium ion" evidence=RCA

GO:0003677 "DNA binding" evidence=ISS

TAIR|locus:2005624 BBX21 "B-box domain protein 21" [Arabidopsis thaliana (taxid:3702)]

 Score = 367 (134.2 bits), Expect = 9.5e-34, P = 9.5e-34
 Identities = 83/212 (39%), Positives = 113/212 (53%)

Query:     1 MRIQCNVCEAAEAKVLCCADEAALCWECDDKVHAANKLASKHQRVPL---SSSSTQMPKC 57
             M+I+C+VC+  EA V C ADEA+LC  CD +VH ANKLASKH R  L   SSS+T  P C
Sbjct:     1 MKIRCDVCDKEEASVFCTADEASLCGGCDHQVHHANKLASKHLRFSLLYPSSSNTSSPLC 60

Query:    58 DICQETSGFFFCLQDRALLCRKCDVAIHTANSYVSAHQRFLLTGVKVALEPADPGAXXXX 117
             DICQ+     FC QDRA+LC+ CD +IH AN +   H RFLLTGVK++   +        
Sbjct:    61 DICQDKKALLFCQQDRAILCKDCDSSIHAANEHTKKHDRFLLTGVKLSATSSVYKPTSKS 120

Query:   118 XXXXXGENILDTKSHSLSRRDALM-PVAA--ECKEVLPASSGGVGGFAMNK---VSFAGG 171
                            S+S    L  P++A  +  ++ P S    G  ++N+    S    
Sbjct:   121 SSSSSSNQDFSVPGSSISNPPPLKKPLSAPPQSNKIQPFSKINGGDASVNQWGSTSTISE 180

Query:   172 SAAGSTPSWHMDDFL--ALPELNQNYSFMDNG 201
                 + P WH++DFL  +LP    + S  D+G
Sbjct:   181 YLMDTLPGWHVEDFLDSSLPTYGFSKSGDDDG 212

GO:0005622 "intracellular" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0008270 "zinc ion binding" evidence=IEA;ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0005515 "protein binding" evidence=IPI

GO:0009641 "shade avoidance" evidence=IGI;IMP

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IMP

TAIR|locus:2122759 bbx23 "B-box domain protein 23" [Arabidopsis thaliana (taxid:3702)]

 Score = 343 (125.8 bits), Expect = 3.3e-31, P = 3.3e-31
 Identities = 68/111 (61%), Positives = 81/111 (72%)

Query:     1 MRIQCNVCEAAEAKVLCCADEAALCWECDDKVHAANKLASKHQRVPL---SSSSTQM--- 54
             M+IQC VCE AEA+VLCC+DEA LC  CD KVH ANKL  +H RV L   ++S+T     
Sbjct:     1 MKIQCEVCEKAEAEVLCCSDEAVLCKPCDIKVHEANKLFQRHHRVALQKDAASATTASGA 60

Query:    55 PKCDICQETSGFFFCLQDRALLCRKCDVAIHTANSYVSAHQRFLLTGVKVA 105
             P CDICQE  G+FFCL+DRA+LC  CD AIHT NS    HQRFLL+GV+V+
Sbjct:    61 PLCDICQERKGYFFCLEDRAMLCNDCDEAIHTCNS----HQRFLLSGVQVS 107

GO:0005622 "intracellular" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0008270 "zinc ion binding" evidence=IEA;ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=TAS

TAIR|locus:2120207 BZS1 "BZS1" [Arabidopsis thaliana (taxid:3702)]

 Score = 340 (124.7 bits), Expect = 6.9e-31, P = 6.9e-31
 Identities = 91/219 (41%), Positives = 112/219 (51%)

Query:     1 MRIQCNVCEAAEAKVLCCADEAALCWECDDKVHAANKLASKHQRVPLSSSSTQ-MPKCDI 59
             M+I C VC+  EA V CCADEAALC  CD  VH ANKLA KH R  L+S + +  P CDI
Sbjct:     1 MKIWCAVCDKEEASVFCCADEAALCNGCDRHVHFANKLAGKHLRFSLTSPTFKDAPLCDI 60

Query:    60 CQETSGFFFCLQDRALLCRKCDVAIHTANSYVSAHQRFLLTGVKVALEP-ADPGAXXXXX 118
             C E     FC +DRA+LCR+CD+ IH AN +   H RFLLTGVK++  P A P A     
Sbjct:    61 CGERRALLFCQEDRAILCRECDIPIHQANEHTKKHNRFLLTGVKISASPSAYPRASNSNS 120

Query:   119 XXXXGENILDTKSHSLSRRDALMPVAAECKEVLPASSGGVG-----GFAMN--KVSFAG- 170
                 G     T+  S+S     +P +A   EV  +SS         G   N   VS +G 
Sbjct:   121 AAAFGR--AKTRPKSVSSE---VPSSAS-NEVFTSSSSTTTSNCYYGIEENYHHVSDSGS 174

Query:   171 GSAA-GST--------PSWHMDDFLALPELNQNYSFMDN 200
             GS   GS         P W ++D L  P      S+ DN
Sbjct:   175 GSGCTGSISEYLMETLPGWRVEDLLEHPSC---VSYEDN 210

GO:0005622 "intracellular" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0008270 "zinc ion binding" evidence=IEA;ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=TAS

GO:0010200 "response to chitin" evidence=IEP

GO:0080167 "response to karrikin" evidence=IEP

GO:0009741 "response to brassinosteroid stimulus" evidence=IEP

TAIR|locus:2050130 BBX18 "B-box domain protein 18" [Arabidopsis thaliana (taxid:3702)]

 Score = 272 (100.8 bits), Expect = 1.1e-23, P = 1.1e-23
 Identities = 53/110 (48%), Positives = 67/110 (60%)

Query:     1 MRIQCNVCEAAEAKVLCCADEAALCWECDDKVHAANKLASKHQRVPLSSSSTQMPKCDIC 60
             MRI C+ CE+A A V C ADEAALC  CD+KVH  NKLAS+H RV L+  S   P CDIC
Sbjct:     1 MRILCDACESAAAIVFCAADEAALCCSCDEKVHKCNKLASRHLRVGLADPSNA-PSCDIC 59

Query:    61 QETSGFFFCLQDRALLCRKCDVAIHTANSYVSAHQRFLLTGVKVALEPAD 110
             +    FF+C  D + LC +CD+ +H        H+RFLL   ++   P D
Sbjct:    60 ENAPAFFYCEIDGSSLCLQCDMVVHVGGK--RTHRRFLLLRQRIEF-PGD 106

GO:0005622 "intracellular" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0008270 "zinc ion binding" evidence=IEA;ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=TAS

GO:0010264 "myo-inositol hexakisphosphate biosynthetic process" evidence=RCA

TAIR|locus:2047246 COL3 "CONSTANS-like 3" [Arabidopsis thaliana (taxid:3702)]

 Score = 201 (75.8 bits), Expect = 3.7e-16, P = 3.7e-16
 Identities = 42/105 (40%), Positives = 58/105 (55%)

Query:     5 CNVCEAAEAKVLCCADEAALCWECDDKVHAANKLASKHQRVPLSSSSTQMPKCDICQETS 64
             C+ C++  A + C AD A LC +CD K+H ANKLAS+H+RV L         C++C++  
Sbjct:     8 CDSCKSTAATLFCRADAAFLCGDCDGKIHTANKLASRHERVWL---------CEVCEQAP 58

Query:    65 GFFFCLQDRALLCRKCDVAIHTANSYVSAHQRFLLTGVKVALEPA 109
                 C  D A LC  CD  IH+AN     H+R  +T    A+ PA
Sbjct:    59 AHVTCKADAAALCVTCDRDIHSANPLSRRHERVPITPFYDAVGPA 103

GO:0005622 "intracellular" evidence=IEA

GO:0005634 "nucleus" evidence=ISM;IDA

GO:0008270 "zinc ion binding" evidence=IEA;ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0005515 "protein binding" evidence=IPI

GO:0010099 "regulation of photomorphogenesis" evidence=IMP

GO:0010161 "red light signaling pathway" evidence=IMP

GO:0009637 "response to blue light" evidence=RCA

GO:0009644 "response to high light intensity" evidence=RCA

GO:0009744 "response to sucrose stimulus" evidence=RCA

GO:0010114 "response to red light" evidence=RCA

GO:0010155 "regulation of proton transport" evidence=RCA

GO:0010218 "response to far red light" evidence=RCA

GO:0032880 "regulation of protein localization" evidence=RCA

TAIR|locus:2143221 COL1 "CONSTANS-like 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 202 (76.2 bits), Expect = 7.0e-16, P = 7.0e-16
 Identities = 41/92 (44%), Positives = 50/92 (54%)

Query:     5 CNVCEAAEAKVLCCADEAALCWECDDKVHAANKLASKHQRVPLSSSSTQMPKCDICQETS 64
             C+ C +A   V C AD A LC  CD +VHAAN+LAS+H+RV +         C  C+   
Sbjct:    12 CDTCRSAACTVYCRADSAYLCSSCDAQVHAANRLASRHERVRV---------CQSCERAP 62

Query:    65 GFFFCLQDRALLCRKCDVAIHTANSYVSAHQR 96
               FFC  D A LC  CD  IH+AN     HQR
Sbjct:    63 AAFFCKADAASLCTTCDSEIHSANPLARRHQR 94

GO:0005622 "intracellular" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0008270 "zinc ion binding" evidence=IEA;ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0007623 "circadian rhythm" evidence=IMP

GO:0009909 "regulation of flower development" evidence=IMP

GO:0005515 "protein binding" evidence=IPI

GO:0042802 "identical protein binding" evidence=IPI

GO:0006281 "DNA repair" evidence=RCA

GO:0010100 "negative regulation of photomorphogenesis" evidence=RCA

GO:0048608 "reproductive structure development" evidence=RCA

UNIPROTKB|Q9FRZ7 Hd1 "Hd1 protein" [Oryza sativa Indica Group (taxid:39946)]

 Score = 195 (73.7 bits), Expect = 3.7e-15, P = 3.7e-15
 Identities = 41/105 (39%), Positives = 56/105 (53%)

Query:     5 CNVCEAAEAKVLCCADEAALCWECDDKVHAANKLASKHQRVPLSSSSTQMPKCDICQETS 64
             C+ C AA + V C AD A LC  CD +VHAAN++AS+H+RV +         C+ C++  
Sbjct:    35 CDGCRAAPSVVYCRADAAYLCASCDARVHAANRVASRHERVRV---------CEACEQAP 85

Query:    65 GFFFCLQDRALLCRKCDVAIHTANSYVSAHQRFLLTGVKVALEPA 109
                 C  D A LC  CDV +H+AN     HQR  +  +     PA
Sbjct:    86 AALACRADAAALCVACDVQVHSANPLARRHQRVPVAPLPAITIPA 130

GO:0003677 "DNA binding" evidence=ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0005634 "nucleus" evidence=ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=ISS

GO:0008270 "zinc ion binding" evidence=ISS

GO:0010229 "inflorescence development" evidence=IGI

GO:0048571 "long-day photoperiodism" evidence=IEP

GO:0048572 "short-day photoperiodism" evidence=IEP

TAIR|locus:2074587 COL2 "CONSTANS-like 2" [Arabidopsis thaliana (taxid:3702)]

 Score = 195 (73.7 bits), Expect = 3.9e-15, P = 3.9e-15
 Identities = 39/92 (42%), Positives = 49/92 (53%)

Query:     5 CNVCEAAEAKVLCCADEAALCWECDDKVHAANKLASKHQRVPLSSSSTQMPKCDICQETS 64
             C+ C +A   V C AD A LC  CD +VHAAN++AS+H+RV +         C  C+   
Sbjct:    16 CDTCRSAACTVYCEADSAYLCTTCDARVHAANRVASRHERVRV---------CQSCESAP 66

Query:    65 GFFFCLQDRALLCRKCDVAIHTANSYVSAHQR 96
               F C  D A LC  CD  IH+AN     HQR
Sbjct:    67 AAFLCKADAASLCTACDAEIHSANPLARRHQR 98

GO:0005622 "intracellular" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0008270 "zinc ion binding" evidence=IEA;ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0009909 "regulation of flower development" evidence=IMP

GO:0009658 "chloroplast organization" evidence=IMP

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: gw1.XI.3429.1 hypothetical protein (274 aa) (Populus trichocarpa)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	210
smart00336	42	smart00336, BBOX, B-Box-type zinc finger	3e-08
smart00336	42	smart00336, BBOX, B-Box-type zinc finger	3e-07
cd00021	39	cd00021, BBOX, B-Box-type zinc finger; zinc bindin	3e-07
cd00021	39	cd00021, BBOX, B-Box-type zinc finger; zinc bindin	4e-07
pfam00643	42	pfam00643, zf-B_box, B-box zinc finger	2e-04

>gnl|CDD|197662 smart00336, BBOX, B-Box-type zinc finger

 Score = 48.1 bits (115), Expect = 3e-08
 Identities = 19/47 (40%), Positives = 22/47 (46%), Gaps = 6/47 (12%)

Query: 53 QMPKCDICQETSGFFFCLQDRALLCRKCDVAIHTANSYVSAHQRFLL 99
          + PKCD   +    FFC +  ALLCR CD A H        H   LL
Sbjct: 2  RAPKCDSHGDEPAEFFCEECGALLCRTCDEAEH------RGHTVVLL 42

Length = 42

>gnl|CDD|197662 smart00336, BBOX, B-Box-type zinc finger

 Score = 45.4 bits (108), Expect = 3e-07
 Identities = 12/43 (27%), Positives = 15/43 (34%), Gaps = 6/43 (13%)

Query: 5  CNVCEAAEAKVLCCADEAALCWECDDKVHAANKLASKHQRVPL 47
          C+      A+  C    A LC  CD+  H        H  V L
Sbjct: 6  CDSHGDEPAEFFCEECGALLCRTCDEAEH------RGHTVVLL 42

Length = 42

>gnl|CDD|237988 cd00021, BBOX, B-Box-type zinc finger; zinc binding domain (CHC3H2); often present in combination with other motifs, like RING zinc finger, NHL motif, coiled-coil or RFP domain in functionally unrelated proteins, most likely mediating protein-protein interaction

 Score = 45.0 bits (107), Expect = 3e-07
 Identities = 18/45 (40%), Positives = 22/45 (48%), Gaps = 6/45 (13%)

Query: 55 PKCDICQETSGFFFCLQDRALLCRKCDVAIHTANSYVSAHQRFLL 99
            CD   E     FC  DRALLC  CD+++H      S H+R  L
Sbjct: 1  RLCDEHGEEPLSLFCETDRALLCVDCDLSVH------SGHRRVPL 39

Length = 39

>gnl|CDD|237988 cd00021, BBOX, B-Box-type zinc finger; zinc binding domain (CHC3H2); often present in combination with other motifs, like RING zinc finger, NHL motif, coiled-coil or RFP domain in functionally unrelated proteins, most likely mediating protein-protein interaction

 Score = 45.0 bits (107), Expect = 4e-07
 Identities = 16/45 (35%), Positives = 20/45 (44%), Gaps = 6/45 (13%)

Query: 3  IQCNVCEAAEAKVLCCADEAALCWECDDKVHAANKLASKHQRVPL 47
            C+        + C  D A LC +CD  VH      S H+RVPL
Sbjct: 1  RLCDEHGEEPLSLFCETDRALLCVDCDLSVH------SGHRRVPL 39

Length = 39

>gnl|CDD|216039 pfam00643, zf-B_box, B-box zinc finger

 Score = 37.5 bits (87), Expect = 2e-04
 Identities = 9/41 (21%), Positives = 19/41 (46%)

Query: 52 TQMPKCDICQETSGFFFCLQDRALLCRKCDVAIHTANSYVS 92
          ++   C   +E     +C   + LLC +C ++ H  ++ V 
Sbjct: 1  SKERLCPEHEEKPLELYCEDCQQLLCEECALSGHKGHTVVP 41

Length = 42

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	210
KOG4367	699	consensus Predicted Zn-finger protein [Function un	98.01
cd00021	39	BBOX B-Box-type zinc finger; zinc binding domain (	97.89
PF00643	42	zf-B_box: B-box zinc finger; InterPro: IPR000315 Z	97.81
cd00021	39	BBOX B-Box-type zinc finger; zinc binding domain (	97.73
smart00336	42	BBOX B-Box-type zinc finger.	97.39
PF00643	42	zf-B_box: B-box zinc finger; InterPro: IPR000315 Z	97.39
smart00336	42	BBOX B-Box-type zinc finger.	97.23

>KOG4367 consensus Predicted Zn-finger protein [Function unknown]

Probab=98.01  E-value=1.7e-06  Score=81.69  Aligned_cols=85  Identities=24%  Similarity=0.508  Sum_probs=73.6

Q ss_pred             ccccccCCCC--ceEEccCCCcccchhhhhhhhhccccccCcccccCCC-------CCCCCCCCCcccCccceEEecCcc
Q 028326            3 IQCNVCEAAE--AKVLCCADEAALCWECDDKVHAANKLASKHQRVPLSS-------SSTQMPKCDICQETSGFFFCLQDR   73 (210)
Q Consensus         3 ~~Cd~C~~a~--A~vyC~aD~A~LC~~CD~~vH~aN~la~rH~RvpL~~-------~~~~~~~Cd~C~~~~A~~fC~~D~   73 (210)
                      ..|..|++++  |.|+|..|+.+.|.-|..+.|-+...+.||.-+|-.+       .+.+...|..|+-+.-.+||.+|+
T Consensus       163 ~kcqlce~a~k~a~v~ceqcdv~yc~pc~~~~hp~rgplakh~l~~~~~grvs~~~s~r~~~~ct~h~~e~~smyc~~ck  242 (699)
T KOG4367|consen  163 LKCQLCEKAPKEATVMCEQCDVFYCDPCRLRCHPPRGPLAKHRLVPPAQGRVSRRLSPRKVSTCTDHELENHSMYCVQCK  242 (699)
T ss_pred             hhhhhhcCChhhhhhhHhhCceEEechHHhccCCCCCchhhcccCCcccCceeeccchhhhhhccCCCCCCceEEEEecC
Confidence            3699999765  9999999999999999999999988889999888755       245667899999999999999999


Q ss_pred             ccccccccccccCC
Q 028326           74 ALLCRKCDVAIHTA   87 (210)
Q Consensus        74 a~LC~~Cd~~~H~a   87 (210)
                      +++|..|...+..+
T Consensus       243 ~pvc~~clee~khs  256 (699)
T KOG4367|consen  243 MPVCYQCLEEGKHS  256 (699)
T ss_pred             ChHHHHHHHhhccc
Confidence            99999998864333

>cd00021 BBOX B-Box-type zinc finger; zinc binding domain (CHC3H2); often present in combination with other motifs, like RING zinc finger, NHL motif, coiled-coil or RFP domain in functionally unrelated proteins, most likely mediating protein-protein interaction

Probab=97.89  E-value=9.2e-06  Score=50.86  Aligned_cols=38  Identities=45%  Similarity=0.855  Sum_probs=34.0

Q ss_pred             CCCcccCccceEEecCccccccccccccccCCCCCCCCCcceee
Q 028326           56 KCDICQETSGFFFCLQDRALLCRKCDVAIHTANSYVSAHQRFLL   99 (210)
Q Consensus        56 ~Cd~C~~~~A~~fC~~D~a~LC~~Cd~~~H~aN~~~~~H~R~~l   99 (210)
                      .|+.|+.+++.+||..|...+|..|+...|+      .|+++||
T Consensus         2 ~C~~H~~~~~~~fC~~~~~~iC~~C~~~~H~------~H~~~~i   39 (39)
T cd00021           2 LCDEHGEEPLSLFCETDRALLCVDCDLSVHS------GHRRVPL   39 (39)
T ss_pred             CCCccCCcceEEEeCccChhhhhhcChhhcC------CCCEeeC
Confidence            4999998899999999999999999988874      8888775

>PF00643 zf-B_box: B-box zinc finger; InterPro: IPR000315 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=97.81  E-value=1.2e-05  Score=51.56  Aligned_cols=40  Identities=30%  Similarity=0.549  Sum_probs=34.4

Q ss_pred             CCCCCcccCccceEEecCccccccccccccccCCCCCCCCCcceee
Q 028326           54 MPKCDICQETSGFFFCLQDRALLCRKCDVAIHTANSYVSAHQRFLL   99 (210)
Q Consensus        54 ~~~Cd~C~~~~A~~fC~~D~a~LC~~Cd~~~H~aN~~~~~H~R~~l   99 (210)
                      ...|+.|+...+.+||..|+.+||..|....|..      |+..+|
T Consensus         3 ~~~C~~H~~~~~~~~C~~C~~~~C~~C~~~~H~~------H~~~~i   42 (42)
T PF00643_consen    3 EPKCPEHPEEPLSLFCEDCNEPLCSECTVSGHKG------HKIVPI   42 (42)
T ss_dssp             SSB-SSTTTSBEEEEETTTTEEEEHHHHHTSTTT------SEEEEC
T ss_pred             CccCccCCccceEEEecCCCCccCccCCCCCCCC------CEEeEC
Confidence            4569999999999999999999999999999854      887765

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents B-box-type zinc finger domains, which are around 40 residues in length. B-box zinc fingers can be divided into two groups, where types 1 and 2 B-box domains differ in their consensus sequence and in the spacing of the 7-8 zinc-binding residues. Several proteins contain both types 1 and 2 B-boxes, suggesting some level of cooperativity between these two domains. B-box domains are found in over 1500 proteins from a variety of organisms. They are found in TRIM (tripartite motif) proteins that consist of an N-terminal RING finger (originally called an A-box), followed by 1-2 B-box domains and a coiled-coil domain (also called RBCC for Ring, B-box, Coiled-Coil). TRIM proteins contain a type 2 B-box domain, and may also contain a type 1 B-box. In proteins that do not contain RING or coiled-coil domains, the B-box domain is primarily type 2. Many type 2 B-box proteins are involved in ubiquitinylation. Proteins containing a B-box zinc finger domain include transcription factors, ribonucleoproteins and proto-oncoproteins; for example, MID1, MID2, TRIM9, TNL, TRIM36, TRIM63, TRIFIC, NCL1 and CONSTANS-like proteins []. The microtubule-associated E3 ligase MID1 (6.3.2 from EC) contains a type 1 B-box zinc finger domain. MID1 specifically binds Alpha-4, which in turn recruits the catalytic subunit of phosphatase 2A (PP2Ac). This complex is required for targeting of PP2Ac for proteasome-mediated degradation. The MID1 B-box coordinates two zinc ions and adopts a beta/beta/alpha cross-brace structure similar to that of ZZ, PHD, RING and FYVE zinc fingers [, ]. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding, 0005622 intracellular; PDB: 3DDT_B 2D8U_A 3Q1D_A 2EGM_A 2YVR_B 2DJA_A 2DQ5_A 2JUN_A 2YRG_A 2DID_A ....

>cd00021 BBOX B-Box-type zinc finger; zinc binding domain (CHC3H2); often present in combination with other motifs, like RING zinc finger, NHL motif, coiled-coil or RFP domain in functionally unrelated proteins, most likely mediating protein-protein interaction

Probab=97.73  E-value=2.1e-05  Score=49.18  Aligned_cols=38  Identities=39%  Similarity=0.791  Sum_probs=33.7

Q ss_pred             cccccCCCCceEEccCCCcccchhhhhhhhhccccccCcccccC
Q 028326            4 QCNVCEAAEAKVLCCADEAALCWECDDKVHAANKLASKHQRVPL   47 (210)
Q Consensus         4 ~Cd~C~~a~A~vyC~aD~A~LC~~CD~~vH~aN~la~rH~RvpL   47 (210)
                      .|+.++++++.+||..|...+|..|+...|.      .|.++||
T Consensus         2 ~C~~H~~~~~~~fC~~~~~~iC~~C~~~~H~------~H~~~~i   39 (39)
T cd00021           2 LCDEHGEEPLSLFCETDRALLCVDCDLSVHS------GHRRVPL   39 (39)
T ss_pred             CCCccCCcceEEEeCccChhhhhhcChhhcC------CCCEeeC
Confidence            6889988899999999999999999987764      7888875

>smart00336 BBOX B-Box-type zinc finger

Probab=97.39  E-value=0.00014  Score=46.04  Aligned_cols=39  Identities=49%  Similarity=0.870  Sum_probs=33.6

Q ss_pred             CCCCcccCccceEEecCccccccccccccccCCCCCCCCCcceee
Q 028326           55 PKCDICQETSGFFFCLQDRALLCRKCDVAIHTANSYVSAHQRFLL   99 (210)
Q Consensus        55 ~~Cd~C~~~~A~~fC~~D~a~LC~~Cd~~~H~aN~~~~~H~R~~l   99 (210)
                      ..|+.|+.+++.+||..|...||..|....|      +.|++++|
T Consensus         4 ~~C~~h~~~~~~~~C~~c~~~iC~~C~~~~H------~~H~~~~l   42 (42)
T smart00336        4 PKCDSHGDEPAEFFCEECGALLCRTCDEAEH------RGHTVVLL   42 (42)
T ss_pred             CcCCCCCCCceEEECCCCCcccccccChhhc------CCCceecC
Confidence            3499999899999999999999999998766      57877764

>PF00643 zf-B_box: B-box zinc finger; InterPro: IPR000315 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=97.39  E-value=0.00015  Score=46.48  Aligned_cols=40  Identities=25%  Similarity=0.507  Sum_probs=34.3

Q ss_pred             CccccccCCCCceEEccCCCcccchhhhhhhhhccccccCcccccC
Q 028326            2 RIQCNVCEAAEAKVLCCADEAALCWECDDKVHAANKLASKHQRVPL   47 (210)
Q Consensus         2 k~~Cd~C~~a~A~vyC~aD~A~LC~~CD~~vH~aN~la~rH~RvpL   47 (210)
                      ...|..+.+.++.+||..|...+|..|....|..      |..+||
T Consensus         3 ~~~C~~H~~~~~~~~C~~C~~~~C~~C~~~~H~~------H~~~~i   42 (42)
T PF00643_consen    3 EPKCPEHPEEPLSLFCEDCNEPLCSECTVSGHKG------HKIVPI   42 (42)
T ss_dssp             SSB-SSTTTSBEEEEETTTTEEEEHHHHHTSTTT------SEEEEC
T ss_pred             CccCccCCccceEEEecCCCCccCccCCCCCCCC------CEEeEC
Confidence            3579999998899999999999999999998864      888775

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents B-box-type zinc finger domains, which are around 40 residues in length. B-box zinc fingers can be divided into two groups, where types 1 and 2 B-box domains differ in their consensus sequence and in the spacing of the 7-8 zinc-binding residues. Several proteins contain both types 1 and 2 B-boxes, suggesting some level of cooperativity between these two domains. B-box domains are found in over 1500 proteins from a variety of organisms. They are found in TRIM (tripartite motif) proteins that consist of an N-terminal RING finger (originally called an A-box), followed by 1-2 B-box domains and a coiled-coil domain (also called RBCC for Ring, B-box, Coiled-Coil). TRIM proteins contain a type 2 B-box domain, and may also contain a type 1 B-box. In proteins that do not contain RING or coiled-coil domains, the B-box domain is primarily type 2. Many type 2 B-box proteins are involved in ubiquitinylation. Proteins containing a B-box zinc finger domain include transcription factors, ribonucleoproteins and proto-oncoproteins; for example, MID1, MID2, TRIM9, TNL, TRIM36, TRIM63, TRIFIC, NCL1 and CONSTANS-like proteins []. The microtubule-associated E3 ligase MID1 (6.3.2 from EC) contains a type 1 B-box zinc finger domain. MID1 specifically binds Alpha-4, which in turn recruits the catalytic subunit of phosphatase 2A (PP2Ac). This complex is required for targeting of PP2Ac for proteasome-mediated degradation. The MID1 B-box coordinates two zinc ions and adopts a beta/beta/alpha cross-brace structure similar to that of ZZ, PHD, RING and FYVE zinc fingers [, ]. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding, 0005622 intracellular; PDB: 3DDT_B 2D8U_A 3Q1D_A 2EGM_A 2YVR_B 2DJA_A 2DQ5_A 2JUN_A 2YRG_A 2DID_A ....

>smart00336 BBOX B-Box-type zinc finger

Probab=97.23  E-value=0.00026  Score=44.80  Aligned_cols=39  Identities=31%  Similarity=0.550  Sum_probs=33.5

Q ss_pred             ccccccCCCCceEEccCCCcccchhhhhhhhhccccccCcccccC
Q 028326            3 IQCNVCEAAEAKVLCCADEAALCWECDDKVHAANKLASKHQRVPL   47 (210)
Q Consensus         3 ~~Cd~C~~a~A~vyC~aD~A~LC~~CD~~vH~aN~la~rH~RvpL   47 (210)
                      ..|..++..++.+||..|.+.+|..|....|      +.|.+++|
T Consensus         4 ~~C~~h~~~~~~~~C~~c~~~iC~~C~~~~H------~~H~~~~l   42 (42)
T smart00336        4 PKCDSHGDEPAEFFCEECGALLCRTCDEAEH------RGHTVVLL   42 (42)
T ss_pred             CcCCCCCCCceEEECCCCCcccccccChhhc------CCCceecC
Confidence            5688998889999999999999999997766      57877765

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	210
2jun_A	101	Midline-1; B-BOX, TRIM, ring finger, alternative s	3e-05

>2jun_A Midline-1; B-BOX, TRIM, ring finger, alternative splicing, coiled coil, cytoplasm, cytoskeleton, disease mutation, ligase, metal-binding; NMR {Homo sapiens} Length = 101

 Score = 40.7 bits (95), Expect = 3e-05
 Identities = 20/88 (22%), Positives = 33/88 (37%), Gaps = 8/88 (9%)

Query: 2  RIQCNVCE---AAEAKVLCCADEAALCWECDDKVHAANKLASKHQRVPLSSSSTQMPKCD 58
          ++ C  C+   A +A   C   E + C EC    H   K  + H+ +     S       
Sbjct: 3  KVLCQFCDQDPAQDAVKTCVTCEVSYCDECLKATHPNKKPFTGHRLIEPIPDSHIRGL-- 60

Query: 59 ICQETSG---FFFCLQDRALLCRKCDVA 83
          +C E        +C+ D  L+C  C + 
Sbjct: 61 MCLEHEDEKVNMYCVTDDQLICALCKLV 88

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	210
2jun_A	101	Midline-1; B-BOX, TRIM, ring finger, alternative s	99.3
2dja_A	84	Midline-2; tripartite motif protein 1, ZF-B_BOX, s	97.05
2yvr_A	50	Transcription intermediary factor 1-beta; ZF-B_BOX	96.61
3ddt_A	48	E3 ubiquitin-protein ligase TRIM63; zinc-binding m	96.47
2did_A	53	Tripartite motif protein 39; ZF-B-box domian, Zn b	96.46
2d8u_A	64	Ubiquitin ligase TRIM63; tripartite motif-containi	96.34
2yrg_A	59	Tripartite motif-containing protein 5; B-box domai	95.96
2csv_A	72	Tripartite motif protein 29; ZF-B_BOX domain, TRIM	95.85
2ffw_A	78	Midline-1; B-BOX, ring finger, zinc-finger, ligase	95.56
1fre_A	42	Nuclear factor XNF7; zinc-binding protein, BBOX, d	95.5
2jun_A	101	Midline-1; B-BOX, TRIM, ring finger, alternative s	94.95
2egm_A	57	Tripartite motif-containing protein 41; ZF-B_BOX d	93.95
2did_A	53	Tripartite motif protein 39; ZF-B-box domian, Zn b	87.84
2ffw_A	78	Midline-1; B-BOX, ring finger, zinc-finger, ligase	87.43
2yvr_A	50	Transcription intermediary factor 1-beta; ZF-B_BOX	84.69
2yrg_A	59	Tripartite motif-containing protein 5; B-box domai	83.11
2d8v_A	67	Zinc finger FYVE domain-containing protein 19; zfy	82.95
2d8u_A	64	Ubiquitin ligase TRIM63; tripartite motif-containi	80.68

>2jun_A Midline-1; B-BOX, TRIM, ring finger, alternative splicing, coiled coil, cytoplasm, cytoskeleton, disease mutation, ligase, metal-binding; NMR {Homo sapiens}

Probab=99.30  E-value=3.2e-12  Score=95.16  Aligned_cols=93  Identities=25%  Similarity=0.540  Sum_probs=77.6

Q ss_pred             CccccccCC---CCceEEccCCCcccchhhhhhhhhccccccCcccc-cCCCCCCCCCCCCcccCccceEEecCcccccc
Q 028326            2 RIQCNVCEA---AEAKVLCCADEAALCWECDDKVHAANKLASKHQRV-PLSSSSTQMPKCDICQETSGFFFCLQDRALLC   77 (210)
Q Consensus         2 k~~Cd~C~~---a~A~vyC~aD~A~LC~~CD~~vH~aN~la~rH~Rv-pL~~~~~~~~~Cd~C~~~~A~~fC~~D~a~LC   77 (210)
                      .+.|++|..   .+|+.+|..|.+.||..|...+|..++.+++|.++ |+.+......+|+.|+.++..+||..|..++|
T Consensus         3 e~~C~~C~~~~~~~av~~C~~C~~~~C~~Cl~~~h~~~~~~~~h~l~~~~~~~~~~~~~C~~H~~e~l~~fC~~~~~~iC   82 (101)
T 2jun_A            3 KVLCQFCDQDPAQDAVKTCVTCEVSYCDECLKATHPNKKPFTGHRLIEPIPDSHIRGLMCLEHEDEKVNMYCVTDDQLIC   82 (101)
T ss_dssp             CCBCTTCCSSSCCBCCEEETTTTEEECHHHHHHHSCSCSSSTTCCBSSCCCSCCSSCCCCSSCSSSCCCEEETTTTEEEC
T ss_pred             CCCCcCCCCCCCCCceEECCcCChHHhHHHCHHHhccCCccCCCeeeccccccCccCCcCcCcCCCcceEECCCCCCccc
Confidence            368999984   68999999999999999999999988888999987 55443445678999998899999999999999


Q ss_pred             ccccc-cccCCCCCCCCCcceeee
Q 028326           78 RKCDV-AIHTANSYVSAHQRFLLT  100 (210)
Q Consensus        78 ~~Cd~-~~H~aN~~~~~H~R~~l~  100 (210)
                      ..|.. ..|.      .|+..+|.
T Consensus        83 ~~C~~~~~H~------~H~~~~l~  100 (101)
T 2jun_A           83 ALCKLVGRHR------DHQVAALS  100 (101)
T ss_dssp             HHHHHHTTTS------SSCBCCCC
T ss_pred             hhcCCCCCcC------CCCeecCC
Confidence            99997 5664      46655553

>2dja_A Midline-2; tripartite motif protein 1, ZF-B_BOX, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.43.1.1 PDB: 2dq5_A

Probab=97.05  E-value=0.00047  Score=49.16  Aligned_cols=59  Identities=20%  Similarity=0.303  Sum_probs=45.3

Q ss_pred             ccCcccccCCCC-CCCCCCCCcccCccceEEecCccccccccccc-cccCCCCCCCCCcceeeeCcc
Q 028326           39 ASKHQRVPLSSS-STQMPKCDICQETSGFFFCLQDRALLCRKCDV-AIHTANSYVSAHQRFLLTGVK  103 (210)
Q Consensus        39 a~rH~RvpL~~~-~~~~~~Cd~C~~~~A~~fC~~D~a~LC~~Cd~-~~H~aN~~~~~H~R~~l~~~~  103 (210)
                      +.+|+.++.... ......|+.|+..+..+||..|..++|..|.. ..|      ..|.-.||..+.
T Consensus         2 ~~~H~l~~p~~~~~~~~~~C~~H~~e~l~lfC~~d~~~iC~~C~~~~~H------~~H~~~~l~ea~   62 (84)
T 2dja_A            2 SSGSSGVEPVPDTHLRGITCLDHENEKVNMYCVSDDQLICALCKLVGRH------RDHQVASLNDRF   62 (84)
T ss_dssp             CCCCCCCCCCCCCCSSCCCCSSCSSSCCCEEETTTTEEECHHHHHTSTT------TTCCBCCCCSSC
T ss_pred             CCCCcccCCCCCCCCCCCcCcCcCCccccEEcCCCCceEcccCcCCCCC------CCCCccCHHHHH
Confidence            467887776442 34456899998888999999999999999998 556      367777777654

>2yvr_A Transcription intermediary factor 1-beta; ZF-B_BOX domain, structural genomics, NPPSFA; 1.80A {Homo sapiens}

Probab=96.61  E-value=0.00083  Score=43.47  Aligned_cols=42  Identities=26%  Similarity=0.581  Sum_probs=34.7

Q ss_pred             CCCCcccCccceEEecCccccccccccccccCCCCCCCCCcceeeeCc
Q 028326           55 PKCDICQETSGFFFCLQDRALLCRKCDVAIHTANSYVSAHQRFLLTGV  102 (210)
Q Consensus        55 ~~Cd~C~~~~A~~fC~~D~a~LC~~Cd~~~H~aN~~~~~H~R~~l~~~  102 (210)
                      ..|+.|+.++..+||..|..++|..|....|.      .|+..+|..+
T Consensus         7 ~~C~~H~~e~l~lfC~~~~~~iC~~C~~~~H~------~H~~~~l~ea   48 (50)
T 2yvr_A            7 VYCNVHKHEPLVLFCESCDTLTCRDCQLNAHK------DHQYQFLEDA   48 (50)
T ss_dssp             CBCSSSTTCBCCEEETTTTEEECHHHHHTTTT------TCCEEETTC-
T ss_pred             CcCcCCCCCCEEEEeCCCCEEEecccCCCcCC------CCceecHHHH
Confidence            35999988889999999999999999987663      6777777654

>3ddt_A E3 ubiquitin-protein ligase TRIM63; zinc-binding motif, ring-like fold, coiled coil, cytoplasm, metal-binding, muscle protein, nucleus; 1.90A {Homo sapiens} SCOP: g.43.1.1 PDB: 3q1d_A

Probab=96.47  E-value=0.0016  Score=41.81  Aligned_cols=43  Identities=26%  Similarity=0.468  Sum_probs=33.8

Q ss_pred             CCCCCCCcccCccceEEecCccccccccccc-cccCCCCCCCCCcceeee
Q 028326           52 TQMPKCDICQETSGFFFCLQDRALLCRKCDV-AIHTANSYVSAHQRFLLT  100 (210)
Q Consensus        52 ~~~~~Cd~C~~~~A~~fC~~D~a~LC~~Cd~-~~H~aN~~~~~H~R~~l~  100 (210)
                      .+...|..|+.++..+||..|..++|..|.. ..|.      .|..+||.
T Consensus         4 ~~~~~C~~H~~e~l~lfC~~d~~~iC~~C~~~~~H~------~H~~~~l~   47 (48)
T 3ddt_A            4 GSHPMCKEHEDEKINIYCLTCEVPTCSMCKVFGIHK------ACEVAPLQ   47 (48)
T ss_dssp             TTSCBCSSSTTSBCCEEETTTTEEECHHHHHHSTTT------TSCEEECC
T ss_pred             ccCCcCCCCCCccccEEcCCCCeeEcccccCCCcCC------CCcEEeCC
Confidence            3456799999888999999999999999985 4664      56666654

>2did_A Tripartite motif protein 39; ZF-B-box domian, Zn binding, one sequence two fold, NPPSFA; NMR {Homo sapiens} SCOP: g.43.1.1 PDB: 2dif_A

Probab=96.46  E-value=0.0024  Score=41.77  Aligned_cols=43  Identities=26%  Similarity=0.531  Sum_probs=35.3

Q ss_pred             CCCCCcccCccceEEecCccccccccccc-cccCCCCCCCCCcceeeeCcc
Q 028326           54 MPKCDICQETSGFFFCLQDRALLCRKCDV-AIHTANSYVSAHQRFLLTGVK  103 (210)
Q Consensus        54 ~~~Cd~C~~~~A~~fC~~D~a~LC~~Cd~-~~H~aN~~~~~H~R~~l~~~~  103 (210)
                      ..+|+.|+ ++..+||..|..++|..|.. ..|      +.|+..||..+.
T Consensus         8 ~~~C~~H~-e~l~lfC~~d~~~iC~~C~~~~~H------~~H~~~~l~ea~   51 (53)
T 2did_A            8 ESLCPQHH-EALSLFCYEDQEAVCLICAISHTH------RAHTVVPLSGPS   51 (53)
T ss_dssp             CCBCTTTC-CBCCEEESSSCSEECHHHHTSSTT------TTSCEEECCCTT
T ss_pred             CCcChhhC-CeeeEEeCCCCeEEeccccCCCCC------CCCcEeeHHHHh
Confidence            34699998 77999999999999999998 456      478888887653

>2d8u_A Ubiquitin ligase TRIM63; tripartite motif-containing 63, muscle-specific ring finger protein 1, MURF1, ring finger protein 28; NMR {Homo sapiens} SCOP: g.43.1.1

Probab=96.34  E-value=0.0016  Score=44.07  Aligned_cols=44  Identities=27%  Similarity=0.446  Sum_probs=35.9

Q ss_pred             CCCCCcccCccceEEecCcccccccccccc-ccCCCCCCCCCcceeeeCcc
Q 028326           54 MPKCDICQETSGFFFCLQDRALLCRKCDVA-IHTANSYVSAHQRFLLTGVK  103 (210)
Q Consensus        54 ~~~Cd~C~~~~A~~fC~~D~a~LC~~Cd~~-~H~aN~~~~~H~R~~l~~~~  103 (210)
                      ...|+.|+.++..+||..|..++|..|... .|.      .|...||..+.
T Consensus         8 ~~~C~~H~~e~l~lfC~~d~~~iC~~C~~~~~H~------~H~~~~l~~a~   52 (64)
T 2d8u_A            8 HPMCKEHEDEKINIYCLTCEVPTCSMCKVFGIHK------ACEVAPLQSVF   52 (64)
T ss_dssp             CCCCSSCTTCCCCSEESSSCCCCCSHHHHSSSTT------SSCEECTTTCC
T ss_pred             CCcCcCcCCCccceEcCcCCceeCccccCCCcCC------CCCeeCHHHHH
Confidence            345999988889999999999999999874 663      67777777544

>2yrg_A Tripartite motif-containing protein 5; B-box domain, ring finger protein 88, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=95.96  E-value=0.0062  Score=40.99  Aligned_cols=43  Identities=23%  Similarity=0.577  Sum_probs=34.7

Q ss_pred             CCCCCcccCccceEEecCccccccccccc-cccCCCCCCCCCcceeeeCcc
Q 028326           54 MPKCDICQETSGFFFCLQDRALLCRKCDV-AIHTANSYVSAHQRFLLTGVK  103 (210)
Q Consensus        54 ~~~Cd~C~~~~A~~fC~~D~a~LC~~Cd~-~~H~aN~~~~~H~R~~l~~~~  103 (210)
                      ..+|..|+ ++..+||..|...+|..|.. ..|      +.|+..||..+.
T Consensus        14 ~~~C~~H~-e~L~lfC~~d~~~iC~~C~~s~eH------~~H~~~~l~ea~   57 (59)
T 2yrg_A           14 VDHCARHG-EKLLLFCQEDGKVICWLCERSQEH------RGHHTFPTSGPS   57 (59)
T ss_dssp             SSBCTTTC-CBCCEEETTTCSEECHHHHTSTTT------TTCCEEECCSSC
T ss_pred             CccChhhC-ceeeeecCCCCcEEecccCCCCcC------CCCcEeeHHHHh
Confidence            34699997 57889999999999999998 455      478888887653

>2csv_A Tripartite motif protein 29; ZF-B_BOX domain, TRIM29, ataxia-telangiectasia group D-associated protein, ATDC, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.43.1.1

Probab=95.85  E-value=0.0045  Score=43.00  Aligned_cols=57  Identities=21%  Similarity=0.360  Sum_probs=42.0

Q ss_pred             ccCcccccCCCCCCCCCCCCcccCccceEEecCccccccccccccccCCCCCCCCCcceeeeCcc
Q 028326           39 ASKHQRVPLSSSSTQMPKCDICQETSGFFFCLQDRALLCRKCDVAIHTANSYVSAHQRFLLTGVK  103 (210)
Q Consensus        39 a~rH~RvpL~~~~~~~~~Cd~C~~~~A~~fC~~D~a~LC~~Cd~~~H~aN~~~~~H~R~~l~~~~  103 (210)
                      +.+|+-+.-. .......|+.|. ++..+||..|..++|..|....|      +.|...||..+.
T Consensus         4 ~~~H~L~~p~-~~~~~~~C~~H~-e~l~lfC~~d~~~iC~~C~~~~H------~~H~~~~l~ea~   60 (72)
T 2csv_A            4 GSSGQLLEPI-RDFEARKCPVHG-KTMELFCQTDQTCICYLCMFQEH------KNHSTVTVEEAK   60 (72)
T ss_dssp             SCCCCCCCCS-SSSSCCBCTTTC-CBCCEEESSSCCEECHHHHHTTT------SSSCEEEHHHHH
T ss_pred             ccCCcccCCc-cccccCcCcccC-CceEEEeCCCCeEEccccCCCCC------CCCCEecHHHHH
Confidence            4566665432 223446899995 88999999999999999988666      378878877654

>2ffw_A Midline-1; B-BOX, ring finger, zinc-finger, ligase; NMR {Homo sapiens}

Probab=95.56  E-value=0.0095  Score=42.43  Aligned_cols=44  Identities=25%  Similarity=0.577  Sum_probs=37.5

Q ss_pred             CccccccCC---CCceEEccCCCcccchhhhhhhhhccccccCcccc
Q 028326            2 RIQCNVCEA---AEAKVLCCADEAALCWECDDKVHAANKLASKHQRV   45 (210)
Q Consensus         2 k~~Cd~C~~---a~A~vyC~aD~A~LC~~CD~~vH~aN~la~rH~Rv   45 (210)
                      .+.|++|..   .+|+..|..+.+.||..|=...|...+.+.+|+-+
T Consensus        30 ~v~C~~C~~~~~~~A~ksCl~C~~s~C~~hl~~~H~~~~~~~~H~L~   76 (78)
T 2ffw_A           30 KVLCQFCDQDPAQDAVKTCVTCEVSYCDECLKATHPNKKPFTGHRLI   76 (78)
T ss_dssp             CCBCSSCCSSSCCBCCEEETTTTEEECHHHHHHHSCCCSSSCSCCCS
T ss_pred             CccCCcCCCCCCCCCeeEccCccchhhhhhhHhhcCCCCCCCCCccc
Confidence            368999985   68999999999999999987779877777888754

>1fre_A Nuclear factor XNF7; zinc-binding protein, BBOX, development, MID-blastula- transition; NMR {Xenopus laevis} SCOP: g.43.1.1

Probab=95.50  E-value=0.0066  Score=37.69  Aligned_cols=31  Identities=26%  Similarity=0.498  Sum_probs=26.4

Q ss_pred             CCCCcccCccceEEecCccccccccccc-cccC
Q 028326           55 PKCDICQETSGFFFCLQDRALLCRKCDV-AIHT   86 (210)
Q Consensus        55 ~~Cd~C~~~~A~~fC~~D~a~LC~~Cd~-~~H~   86 (210)
                      .+|..|+ ++..+||..|...+|..|.. ..|.
T Consensus         4 ~~C~~H~-e~l~lfC~~d~~~iC~~C~~~~~H~   35 (42)
T 1fre_A            4 EKCSEHD-ERLKLYCKDDGTLSCVICRDSLKHA   35 (42)
T ss_dssp             CCCCSSC-SSCCCCCCSSSSSSCCTTSSCSSCT
T ss_pred             ccchhhC-CeeeEEeCCCCeEEeccCCCCCCCC
Confidence            3599997 67899999999999999998 4564

>2jun_A Midline-1; B-BOX, TRIM, ring finger, alternative splicing, coiled coil, cytoplasm, cytoskeleton, disease mutation, ligase, metal-binding; NMR {Homo sapiens}

Probab=94.95  E-value=0.019  Score=41.67  Aligned_cols=43  Identities=19%  Similarity=0.464  Sum_probs=37.0

Q ss_pred             CCCCcccC---ccceEEecCccccccccccccccCCCCCCCCCcce
Q 028326           55 PKCDICQE---TSGFFFCLQDRALLCRKCDVAIHTANSYVSAHQRF   97 (210)
Q Consensus        55 ~~Cd~C~~---~~A~~fC~~D~a~LC~~Cd~~~H~aN~~~~~H~R~   97 (210)
                      ..|++|.+   .++..+|..|...+|..|....|..+....+|+++
T Consensus         4 ~~C~~C~~~~~~~av~~C~~C~~~~C~~Cl~~~h~~~~~~~~h~l~   49 (101)
T 2jun_A            4 VLCQFCDQDPAQDAVKTCVTCEVSYCDECLKATHPNKKPFTGHRLI   49 (101)
T ss_dssp             CBCTTCCSSSCCBCCEEETTTTEEECHHHHHHHSCSCSSSTTCCBS
T ss_pred             CCCcCCCCCCCCCceEECCcCChHHhHHHCHHHhccCCccCCCeee
Confidence            45999984   57889999999999999999889888777888876

>2egm_A Tripartite motif-containing protein 41; ZF-B_BOX domain, tripartite motif protein 41, TRIM41, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=93.95  E-value=0.02  Score=38.26  Aligned_cols=33  Identities=24%  Similarity=0.438  Sum_probs=27.4

Q ss_pred             CCCCCCcccCccceEEecCccccccccccc-cccC
Q 028326           53 QMPKCDICQETSGFFFCLQDRALLCRKCDV-AIHT   86 (210)
Q Consensus        53 ~~~~Cd~C~~~~A~~fC~~D~a~LC~~Cd~-~~H~   86 (210)
                      ...+|..|+ ++..+||..|...||..|.. ..|.
T Consensus        17 ~~~~C~~H~-e~L~lfC~~d~~~iC~~C~~~~eH~   50 (57)
T 2egm_A           17 DQGICPKHQ-EALKLFCEVDEEAICVVCRESRSHK   50 (57)
T ss_dssp             TTSBCTTTC-CBCCEEETTTTEEECHHHHHSHHHH
T ss_pred             ccCcChhhC-ceeeEEcCCCCcEEecccCCCCCCC
Confidence            345799995 77999999999999999997 4553

>2did_A Tripartite motif protein 39; ZF-B-box domian, Zn binding, one sequence two fold, NPPSFA; NMR {Homo sapiens} SCOP: g.43.1.1 PDB: 2dif_A

Probab=87.84  E-value=0.53  Score=30.25  Aligned_cols=41  Identities=29%  Similarity=0.591  Sum_probs=31.3

Q ss_pred             ccccccCCCCceEEccCCCcccchhhhh-hhhhccccccCcccccCCCC
Q 028326            3 IQCNVCEAAEAKVLCCADEAALCWECDD-KVHAANKLASKHQRVPLSSS   50 (210)
Q Consensus         3 ~~Cd~C~~a~A~vyC~aD~A~LC~~CD~-~vH~aN~la~rH~RvpL~~~   50 (210)
                      ..|..-. .+-.+||..|...+|..|-. .-|      +.|..+||.++
T Consensus         9 ~~C~~H~-e~l~lfC~~d~~~iC~~C~~~~~H------~~H~~~~l~ea   50 (53)
T 2did_A            9 SLCPQHH-EALSLFCYEDQEAVCLICAISHTH------RAHTVVPLSGP   50 (53)
T ss_dssp             CBCTTTC-CBCCEEESSSCSEECHHHHTSSTT------TTSCEEECCCT
T ss_pred             CcChhhC-CeeeEEeCCCCeEEeccccCCCCC------CCCcEeeHHHH
Confidence            3565555 57889999999999999985 455      46788888654

>2ffw_A Midline-1; B-BOX, ring finger, zinc-finger, ligase; NMR {Homo sapiens}

Probab=87.43  E-value=0.4  Score=33.80  Aligned_cols=43  Identities=19%  Similarity=0.445  Sum_probs=35.7

Q ss_pred             CCCCCcccC---ccceEEecCccccccccccccccCCCCCCCCCcc
Q 028326           54 MPKCDICQE---TSGFFFCLQDRALLCRKCDVAIHTANSYVSAHQR   96 (210)
Q Consensus        54 ~~~Cd~C~~---~~A~~fC~~D~a~LC~~Cd~~~H~aN~~~~~H~R   96 (210)
                      ...|++|..   .+|..+|..|.+.+|..|-...|.......+|+-
T Consensus        30 ~v~C~~C~~~~~~~A~ksCl~C~~s~C~~hl~~~H~~~~~~~~H~L   75 (78)
T 2ffw_A           30 KVLCQFCDQDPAQDAVKTCVTCEVSYCDECLKATHPNKKPFTGHRL   75 (78)
T ss_dssp             CCBCSSCCSSSCCBCCEEETTTTEEECHHHHHHHSCCCSSSCSCCC
T ss_pred             CccCCcCCCCCCCCCeeEccCccchhhhhhhHhhcCCCCCCCCCcc
Confidence            457999975   5788999999999999998877877766777764

>2yvr_A Transcription intermediary factor 1-beta; ZF-B_BOX domain, structural genomics, NPPSFA; 1.80A {Homo sapiens}

Probab=84.69  E-value=0.93  Score=28.63  Aligned_cols=42  Identities=24%  Similarity=0.498  Sum_probs=31.2

Q ss_pred             ccccccCCCCceEEccCCCcccchhhhhhhhhccccccCcccccCCCC
Q 028326            3 IQCNVCEAAEAKVLCCADEAALCWECDDKVHAANKLASKHQRVPLSSS   50 (210)
Q Consensus         3 ~~Cd~C~~a~A~vyC~aD~A~LC~~CD~~vH~aN~la~rH~RvpL~~~   50 (210)
                      ..|..-...+-.+||..|...+|..|-..-|      +.|..++|.++
T Consensus         7 ~~C~~H~~e~l~lfC~~~~~~iC~~C~~~~H------~~H~~~~l~ea   48 (50)
T 2yvr_A            7 VYCNVHKHEPLVLFCESCDTLTCRDCQLNAH------KDHQYQFLEDA   48 (50)
T ss_dssp             CBCSSSTTCBCCEEETTTTEEECHHHHHTTT------TTCCEEETTC-
T ss_pred             CcCcCCCCCCEEEEeCCCCEEEecccCCCcC------CCCceecHHHH
Confidence            3466654456789999999999999976555      36888888553

>2yrg_A Tripartite motif-containing protein 5; B-box domain, ring finger protein 88, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=83.11  E-value=1.2  Score=29.54  Aligned_cols=40  Identities=25%  Similarity=0.692  Sum_probs=30.1

Q ss_pred             cccccCCCCceEEccCCCcccchhhhh-hhhhccccccCcccccCCCC
Q 028326            4 QCNVCEAAEAKVLCCADEAALCWECDD-KVHAANKLASKHQRVPLSSS   50 (210)
Q Consensus         4 ~Cd~C~~a~A~vyC~aD~A~LC~~CD~-~vH~aN~la~rH~RvpL~~~   50 (210)
                      .|..-+ .+-.+||..|...+|..|.. .-|      +.|..+||.++
T Consensus        16 ~C~~H~-e~L~lfC~~d~~~iC~~C~~s~eH------~~H~~~~l~ea   56 (59)
T 2yrg_A           16 HCARHG-EKLLLFCQEDGKVICWLCERSQEH------RGHHTFPTSGP   56 (59)
T ss_dssp             BCTTTC-CBCCEEETTTCSEECHHHHTSTTT------TTCCEEECCSS
T ss_pred             cChhhC-ceeeeecCCCCcEEecccCCCCcC------CCCcEeeHHHH
Confidence            455554 46789999999999999986 445      36777888654

>2d8v_A Zinc finger FYVE domain-containing protein 19; zfyve19, ZF- B_BOX, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.43.1.1

Probab=82.95  E-value=1.6  Score=30.51  Aligned_cols=49  Identities=27%  Similarity=0.425  Sum_probs=40.3

Q ss_pred             CCCCCCcccCccceEEecCc-cccccccccccccCCCCCCCCCcceeeeCcc
Q 028326           53 QMPKCDICQETSGFFFCLQD-RALLCRKCDVAIHTANSYVSAHQRFLLTGVK  103 (210)
Q Consensus        53 ~~~~Cd~C~~~~A~~fC~~D-~a~LC~~Cd~~~H~aN~~~~~H~R~~l~~~~  103 (210)
                      +.+-|-+|.+. |.+.|..| .-+.|..|-..+|. ...-+.|+-+++....
T Consensus         7 e~pWC~ICneD-AtlrC~gCdgDLYC~rC~rE~H~-~~d~r~Hk~v~y~~~~   56 (67)
T 2d8v_A            7 GLPWCCICNED-ATLRCAGCDGDLYCARCFREGHD-NFDLKEHQTSPYHPRR   56 (67)
T ss_dssp             CCSSCTTTCSC-CCEEETTTTSEEECSSHHHHHTT-TSSTTTCCEECCCCSS
T ss_pred             CCCeeEEeCCC-CeEEecCCCCceehHHHHHHHcc-chhhhccceeeccCCC
Confidence            35669999887 88999988 67999999999994 5667899999886543

>2d8u_A Ubiquitin ligase TRIM63; tripartite motif-containing 63, muscle-specific ring finger protein 1, MURF1, ring finger protein 28; NMR {Homo sapiens} SCOP: g.43.1.1

Probab=80.68  E-value=1.3  Score=29.19  Aligned_cols=43  Identities=23%  Similarity=0.423  Sum_probs=32.5

Q ss_pred             ccccccCCCCceEEccCCCcccchhhhh-hhhhccccccCcccccCCCCC
Q 028326            3 IQCNVCEAAEAKVLCCADEAALCWECDD-KVHAANKLASKHQRVPLSSSS   51 (210)
Q Consensus         3 ~~Cd~C~~a~A~vyC~aD~A~LC~~CD~-~vH~aN~la~rH~RvpL~~~~   51 (210)
                      ..|..-...+-.+||..|...+|..|-. .-|.      .|..+||.++.
T Consensus         9 ~~C~~H~~e~l~lfC~~d~~~iC~~C~~~~~H~------~H~~~~l~~a~   52 (64)
T 2d8u_A            9 PMCKEHEDEKINIYCLTCEVPTCSMCKVFGIHK------ACEVAPLQSVF   52 (64)
T ss_dssp             CCCSSCTTCCCCSEESSSCCCCCSHHHHSSSTT------SSCEECTTTCC
T ss_pred             CcCcCcCCCccceEcCcCCceeCccccCCCcCC------CCCeeCHHHHH
Confidence            3466664457789999999999999975 3563      68888987654

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	210
d2djaa1	71	Midline-2 {Human (Homo sapiens) [TaxId: 9606]}	96.92
d2d8ua1	51	Ubiquitin ligase trim63 {Human (Homo sapiens) [Tax	96.8
d2dq5a1	47	Midline-1 {Human (Homo sapiens) [TaxId: 9606]}	96.53
d1frea_	39	Nuclear factor XNF7 {African clawed frog (Xenopus	96.13
d2dida1	40	Tripartite motif-containing protein 39 {Human (Hom	95.97
d2csva1	59	Tripartite motif-containing protein 29 {Human (Hom	95.59
d2djaa1	71	Midline-2 {Human (Homo sapiens) [TaxId: 9606]}	87.66
d2fc7a1	69	Zinc finger ZZ-type-containing protein 3, ZZZ3 {Hu	87.54

>d2djaa1 g.43.1.1 (A:8-78) Midline-2 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: B-box zinc-binding domain
superfamily: B-box zinc-binding domain
family: B-box zinc-binding domain
domain: Midline-2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.92  E-value=0.00027  Score=47.60  Aligned_cols=45  Identities=22%  Similarity=0.392  Sum_probs=36.1

Q ss_pred             CCCCCCcccCccceEEecCcccccccccccc-ccCCCCCCCCCcceeeeCcc
Q 028326           53 QMPKCDICQETSGFFFCLQDRALLCRKCDVA-IHTANSYVSAHQRFLLTGVK  103 (210)
Q Consensus        53 ~~~~Cd~C~~~~A~~fC~~D~a~LC~~Cd~~-~H~aN~~~~~H~R~~l~~~~  103 (210)
                      ....|+.|...+..|||..|..++|..|... .|      ..|+-.+|..+.
T Consensus        10 r~~~C~~H~~e~l~~fC~~C~~~iC~~C~~~~~H------k~H~~~~i~~a~   55 (71)
T d2djaa1          10 RGITCLDHENEKVNMYCVSDDQLICALCKLVGRH------RDHQVASLNDRF   55 (71)
T ss_dssp             SCCCCSSCSSSCCCEEETTTTEEECHHHHHTSTT------TTCCBCCCCSSC
T ss_pred             CCCcCcccCCccceeEcCCCCceeccccccCCCC------CCCcCcCHHHHH
Confidence            3446999999999999999999999999875 45      357777776543

>d2d8ua1 g.43.1.1 (A:8-58) Ubiquitin ligase trim63 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: B-box zinc-binding domain
superfamily: B-box zinc-binding domain
family: B-box zinc-binding domain
domain: Ubiquitin ligase trim63
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.80  E-value=0.0002  Score=45.84  Aligned_cols=43  Identities=28%  Similarity=0.467  Sum_probs=35.1

Q ss_pred             CCCCcccCccceEEecCcccccccccccc-ccCCCCCCCCCcceeeeCcc
Q 028326           55 PKCDICQETSGFFFCLQDRALLCRKCDVA-IHTANSYVSAHQRFLLTGVK  103 (210)
Q Consensus        55 ~~Cd~C~~~~A~~fC~~D~a~LC~~Cd~~-~H~aN~~~~~H~R~~l~~~~  103 (210)
                      |.|+.|..++..|||..|+.++|..|.+. .|      +.|+-.+|..+.
T Consensus         2 p~C~~H~~e~l~~yC~~c~~~iC~~C~~~~~H------k~H~v~~l~~a~   45 (51)
T d2d8ua1           2 PMCKEHEDEKINIYCLTCEVPTCSMCKVFGIH------KACEVAPLQSVF   45 (51)
T ss_dssp             CCCSSCTTCCCCSEESSSCCCCCSHHHHSSST------TSSCEECTTTCC
T ss_pred             CCCcccCcCcceEEcCCCCceECccccCcCCc------CcCcCcCHHHHH
Confidence            45999999999999999999999999764 56      357777776543

>d2dq5a1 g.43.1.1 (A:168-214) Midline-1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: B-box zinc-binding domain
superfamily: B-box zinc-binding domain
family: B-box zinc-binding domain
domain: Midline-1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.53  E-value=0.00051  Score=43.19  Aligned_cols=39  Identities=26%  Similarity=0.561  Sum_probs=31.8

Q ss_pred             CCCcccCccceEEecCcccccccccccc-ccCCCCCCCCCcceeee
Q 028326           56 KCDICQETSGFFFCLQDRALLCRKCDVA-IHTANSYVSAHQRFLLT  100 (210)
Q Consensus        56 ~Cd~C~~~~A~~fC~~D~a~LC~~Cd~~-~H~aN~~~~~H~R~~l~  100 (210)
                      .|+.|..++..+||..|..++|..|.+. .|+      .|+-.+|.
T Consensus         7 ~C~~H~~e~l~~yC~~C~~~iC~~C~~~~~H~------~H~~~~l~   46 (47)
T d2dq5a1           7 MCLEHEDEKVNMYCVTDDQLICALCKLVGRHR------DHQVAALS   46 (47)
T ss_dssp             BCSSCTTSBEEEEETTTTEEEEHHHHHTSSTT------SSCCCCSC
T ss_pred             cchhhCCCcceEEcCCCCccCCccCcCcCCcC------CCeEeeCC
Confidence            4999999999999999999999999875 563      46555543

>d1frea_ g.43.1.1 (A:) Nuclear factor XNF7 {African clawed frog (Xenopus laevis) [TaxId: 8355]}

class: Small proteins
fold: B-box zinc-binding domain
superfamily: B-box zinc-binding domain
family: B-box zinc-binding domain
domain: Nuclear factor XNF7
species: African clawed frog (Xenopus laevis) [TaxId: 8355]

Probab=96.13  E-value=0.0012  Score=40.01  Aligned_cols=30  Identities=27%  Similarity=0.545  Sum_probs=25.6

Q ss_pred             CCCcccCccceEEecCcccccccccccc-ccC
Q 028326           56 KCDICQETSGFFFCLQDRALLCRKCDVA-IHT   86 (210)
Q Consensus        56 ~Cd~C~~~~A~~fC~~D~a~LC~~Cd~~-~H~   86 (210)
                      +|+.|+ ++..+||..|..++|..|... .|.
T Consensus         2 ~C~~H~-e~l~lfC~~d~~~iC~~C~~~~~H~   32 (39)
T d1frea_           2 KCSEHD-ERLKLYCKDDGTLSCVICRDSLKHA   32 (39)
T ss_dssp             CCCSSC-SSCCCCCCSSSSSSCCTTSSCSSCT
T ss_pred             CCcccC-cceeEEcccCCcEeeccCcCCCCcC
Confidence            699996 678999999999999999875 453

>d2dida1 g.43.1.1 (A:8-47) Tripartite motif-containing protein 39 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: B-box zinc-binding domain
superfamily: B-box zinc-binding domain
family: B-box zinc-binding domain
domain: Tripartite motif-containing protein 39
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.97  E-value=0.0017  Score=39.54  Aligned_cols=37  Identities=27%  Similarity=0.591  Sum_probs=29.5

Q ss_pred             CCCcccCccceEEecCcccccccccccc-ccCCCCCCCCCcceee
Q 028326           56 KCDICQETSGFFFCLQDRALLCRKCDVA-IHTANSYVSAHQRFLL   99 (210)
Q Consensus        56 ~Cd~C~~~~A~~fC~~D~a~LC~~Cd~~-~H~aN~~~~~H~R~~l   99 (210)
                      .|+.|+ ++..+||..|+.++|..|... .|      ..|+-.||
T Consensus         3 ~C~~H~-e~l~lfC~~d~~~iC~~C~~~~~H------~~H~v~pi   40 (40)
T d2dida1           3 LCPQHH-EALSLFCYEDQEAVCLICAISHTH------RAHTVVPL   40 (40)
T ss_dssp             BCTTTC-CBCCEEESSSCSEECHHHHTSSTT------TTSCEEEC
T ss_pred             cchhhC-ccceEEcccCCcEeeccCcCCCCc------CCCcEecC
Confidence            599995 778999999999999999875 56      35665554

>d2csva1 g.43.1.1 (A:8-66) Tripartite motif-containing protein 29 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: B-box zinc-binding domain
superfamily: B-box zinc-binding domain
family: B-box zinc-binding domain
domain: Tripartite motif-containing protein 29
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.59  E-value=0.0017  Score=42.41  Aligned_cols=42  Identities=21%  Similarity=0.471  Sum_probs=34.5

Q ss_pred             CCCCCcccCccceEEecCccccccccccccccCCCCCCCCCcceeeeCc
Q 028326           54 MPKCDICQETSGFFFCLQDRALLCRKCDVAIHTANSYVSAHQRFLLTGV  102 (210)
Q Consensus        54 ~~~Cd~C~~~~A~~fC~~D~a~LC~~Cd~~~H~aN~~~~~H~R~~l~~~  102 (210)
                      ..+|+.|+ .+..+||..|..++|..|....|.      .|.-.+|..+
T Consensus        11 ~~~C~~H~-e~l~lyC~~c~~~iC~~C~~~~H~------~H~~~~l~~a   52 (59)
T d2csva1          11 ARKCPVHG-KTMELFCQTDQTCICYLCMFQEHK------NHSTVTVEEA   52 (59)
T ss_dssp             CCBCTTTC-CBCCEEESSSCCEECHHHHHTTTS------SSCEEEHHHH
T ss_pred             hCchhhhC-CccceECCCCCceECcccCcccCC------CCCeeCHHHH
Confidence            45799995 688999999999999999877773      6887777654

>d2djaa1 g.43.1.1 (A:8-78) Midline-2 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: B-box zinc-binding domain
superfamily: B-box zinc-binding domain
family: B-box zinc-binding domain
domain: Midline-2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=87.66  E-value=0.3  Score=31.79  Aligned_cols=43  Identities=26%  Similarity=0.486  Sum_probs=33.1

Q ss_pred             ccccccCCCCceEEccCCCcccchhhhh-hhhhccccccCcccccCCCCC
Q 028326            3 IQCNVCEAAEAKVLCCADEAALCWECDD-KVHAANKLASKHQRVPLSSSS   51 (210)
Q Consensus         3 ~~Cd~C~~a~A~vyC~aD~A~LC~~CD~-~vH~aN~la~rH~RvpL~~~~   51 (210)
                      ..|..-...+..+||..|...+|..|-. ..|      +.|.-++|.++.
T Consensus        12 ~~C~~H~~e~l~~fC~~C~~~iC~~C~~~~~H------k~H~~~~i~~a~   55 (71)
T d2djaa1          12 ITCLDHENEKVNMYCVSDDQLICALCKLVGRH------RDHQVASLNDRF   55 (71)
T ss_dssp             CCCSSCSSSCCCEEETTTTEEECHHHHHTSTT------TTCCBCCCCSSC
T ss_pred             CcCcccCCccceeEcCCCCceeccccccCCCC------CCCcCcCHHHHH
Confidence            3576665667899999999999999964 356      358888887653

>d2fc7a1 g.44.1.6 (A:8-76) Zinc finger ZZ-type-containing protein 3, ZZZ3 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: ZZ domain
domain: Zinc finger ZZ-type-containing protein 3, ZZZ3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=87.54  E-value=0.38  Score=31.76  Aligned_cols=44  Identities=23%  Similarity=0.413  Sum_probs=32.2

Q ss_pred             CCCcccCccc---eEEecCc----cccccccccccccCCCCCCCCCcceee
Q 028326           56 KCDICQETSG---FFFCLQD----RALLCRKCDVAIHTANSYVSAHQRFLL   99 (210)
Q Consensus        56 ~Cd~C~~~~A---~~fC~~D----~a~LC~~Cd~~~H~aN~~~~~H~R~~l   99 (210)
                      .|+.|...+.   .|.|..|    ..-||..|-...+........|.-.||
T Consensus        16 ~Cd~C~~~pi~G~R~~C~~Cp~~~d~DLC~~C~~~~~~~~~H~~~H~~~~I   66 (69)
T d2fc7a1          16 KCDNCGIEPIQGVRWHCQDCPPEMSLDFCDSCSDCLHETDIHKEDHQLEPI   66 (69)
T ss_dssp             CCSSSCCSSEESCEEEESSSCSSSCCEEEGGGTTCCCCCSSCCSSSCEEEE
T ss_pred             EcCCCCCcCcCCcccCCCCCCCCCCccchHHhhcCcccCCCCCCCCCEEEe
Confidence            4999988864   4789998    578999998776655444556665555