Citrus Sinensis ID: 028328

Local Sequence Feature Prediction

Prediction and (Method)	Result

Residue Number Marker

Protein Sequence

Secondary Structure (PSIPRED)

Secondary Structure Prediction (SSPRO)

Coil and Loop (DISEMBL)

Flexible Loop (DISEMBL)

Low Complexity Region (SEG)

Disordered region (IsUnstruct)

Disordered Region (DISOPRED)

Disordered Region (DISEMBL)

Disordered Region (DISPRO)

Transmembrane Helix (TMHMM)

Transmembrane Helix (HMMTOP)

Transmembrane Helix (MEMSAT)

TM Helix, Signal Peptide (MEMSAT_SVM)

TM Helix, Signal Peptide (Phobius)

Signal Peptide (SignalP HMM Mode)

Signal Peptide (SignalP NN Mode)

Coiled Coils (COILS)

Positional Conservation

--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210

MVTSGSSSNNNAGAFTTIKETVTFEKEIKKSKFIAIAGPISNEQSAQSFLSQVSDPRATHNCWAYKVGNQYRSNDDGEPSGTAGKPIHSAIVSSGLDRIMVVVTRYFGGIKLGTGGLVRAYGGVASECLRNAPTILVKSRVPMGVEVPFELLGILYHQLQLFQVEDTNQDYDTGKDGIAMVTFKVDFDRAENLEDAIKNNCRRDLVFYKH

cccccccccccccccEEccccEEEEEEEEcEEEEEEEEccccHHHHHHHHHHHcccccccEEEEEEEcccccccccccccccccHHHHHHHHHcccccEEEEEEEEcccEEEccccHHHHHHHHHHHHHHHccEEEEEEEEEEEEEEccccHHHHHHHHHccccEEEEEEEcccccEEEEEEEEEccccHHHHHHHHHHHcccEEEEEEc

cccccccccccccccEEccccccEEEEEEccHHHEEEcccccHHHHHHHHHHHcccccccccEEEEEcccccccccccccccccHHHHHHHHHcccccEEEEEEEEcccEEcccHHHHHHHHHHHHHHHHHcccEEEEEEEEEEEEEcHHHHHHHHHHHHHcccEEEEEEEccccEEEEEEEEEccHHHHHHHHHHHHHHHcccEEEEcc

mvtsgsssnnnagafTTIKETVTFEKEIKKSKFIAIAGPISNEQSAQSFLsqvsdprathncwaykvgnqyrsnddgepsgtagkpihSAIVSSGLDRIMVVVTRYFggiklgtgglvrayggvaseclrnaptilvksrvpmgvevPFELLGILYHQLQLfqvedtnqdydtgkdgIAMVTFKVDFDRAENLEDAIKNNcrrdlvfykh

mvtsgsssnnnagafttiketvtFEKEIKKSKFIAIAGPISNEQSAQSFLSQVSDPRATHNCWAYKVGNQYRSNDDGEPSGTAGKPIHSAIVSSGLDRIMVVVTRYFGGIKLGTGGLVRAYGGVASECLrnaptilvksrvpMGVEVPFELLGILYHQLQLFQVEDTNQDYDTGKDGIAMVTFKVDFDRAENLedaiknncrrdlvfykh

MVTsgsssnnnagaFTTIKETVTFEKEIKKSKFIAIAGPISNEQSAQSFLSQVSDPRATHNCWAYKVGNQYRSNDDGEPSGTAGKPIHSAIVSSGLDRIMVVVTRYFGGIKLGTGGLVRAYGGVASECLRNAPTILVKSRVPMGVEVPFELLGILYHQLQLFQVEDTNQDYDTGKDGIAMVTFKVDFDRAENLEDAIKNNCRRDLVFYKH

**************FTTIKETVTFEKEIKKSKFIAIAGP******************ATHNCWAYKVGN******************HSAIVSSGLDRIMVVVTRYFGGIKLGTGGLVRAYGGVASECLRNAPTILVKSRVPMGVEVPFELLGILYHQLQLFQVEDTNQDYDTGKDGIAMVTFKVDFDRAENLEDAIKNNCRRDLVFY**

****************TIKETVTFEKEIKKSKFIAIAGPISNEQSAQSFLSQVSDPRATHNCWAYKVGNQYRSNDDGEPSGTAGKPIHSAIVSSGLDRIMVVVTRYFGGIKLGTGGLVRAYGGVASECLRNAPTILVKSRVPMGVEVPFELLGILYHQLQLFQVEDTNQDYDTGKDGIAMVTFKVDFDRAENLEDAIKNNCRRDLVFY**

**********NAGAFTTIKETVTFEKEIKKSKFIAIAGPISNE**********SDPRATHNCWAYKVGNQYRS*********AGKPIHSAIVSSGLDRIMVVVTRYFGGIKLGTGGLVRAYGGVASECLRNAPTILVKSRVPMGVEVPFELLGILYHQLQLFQVEDTNQDYDTGKDGIAMVTFKVDFDRAENLEDAIKNNCRRDLVFYKH

*************AFTTIKETVTFEKEIKKSKFIAIAGPISNEQSAQSFLSQVSDPRATHNCWAYKVGNQYRSNDDGEPSGTAGKPIHSAIVSSGLDRIMVVVTRYFGGIKLGTGGLVRAYGGVASECLRNAPTILVKSRVPMGVEVPFELLGILYHQLQLFQVEDTNQDYDTGKDGIAMVTFKVDFDRAENLEDAIKNNCRRDLVFY**

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no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Alignment graph	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query		210	2.2.26 [Sep-21-2011]
P32438		179	IMPACT family member in p	no	no	0.652	0.765	0.485	6e-26
P32437		217	IMPACT family member YvyE	yes	no	0.714	0.691	0.412	4e-24
P44842		206	IMPACT family member HI_0	yes	no	0.738	0.752	0.382	1e-16
P27862		204	IMPACT family member YigZ	N/A	no	0.623	0.642	0.413	2e-14
Q54JW9		345	Protein IMPACT homolog OS	yes	no	0.390	0.237	0.368	1e-05

>sp\|P32438\|YPOL_THETH IMPACT family member in pol 5'region (Fragment) OS=Thermus thermophilus PE=3 SV=1	Back alignment and function desciption

 Score =  117 bits (293), Expect = 6e-26,   Method: Compositional matrix adjust.
 Identities = 67/138 (48%), Positives = 97/138 (70%), Gaps = 1/138 (0%)

Query: 28  IKKSKFIAIAGPISNEQSAQSFLSQVSDPRATHNCWAYKVGNQYRSNDDGEPSGTAGKPI 87
           I++S+F+A A P ++E+ A +FL+   +P+ATHN +AY++G  YR +DDGEP    G+PI
Sbjct: 2   IQRSRFLAKAAPAASEEEALAFLAAHREPQATHNAYAYRIGPLYRFSDDGEPR-APGRPI 60

Query: 88  HSAIVSSGLDRIMVVVTRYFGGIKLGTGGLVRAYGGVASECLRNAPTILVKSRVPMGVEV 147
             AI ++GLDR++V+V RYFGG+KLG GGLVRAYGGVA+E LR AP   +   V +   V
Sbjct: 61  LHAIEAAGLDRVVVLVVRYFGGVKLGAGGLVRAYGGVAAEALRRAPKAPLLDWVEVAFRV 120

Query: 148 PFELLGILYHQLQLFQVE 165
           PF  +G ++  L+   +E
Sbjct: 121 PFPEVGRVHGLLRARHLE 138

Thermus thermophilus (taxid: 274)

>sp\|P32437\|YVYE_BACSU IMPACT family member YvyE OS=Bacillus subtilis (strain 168) GN=yvyE PE=3 SV=2	Back alignment and function description

>sp\|P44842\|Y722_HAEIN IMPACT family member HI_0722 OS=Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd) GN=HI_0722 PE=3 SV=1	Back alignment and function description

>sp\|P27862\|YIGZ_ECOLI IMPACT family member YigZ OS=Escherichia coli (strain K12) GN=yigZ PE=1 SV=2	Back alignment and function description

>sp\|Q54JW9\|IMPCT_DICDI Protein IMPACT homolog OS=Dictyostelium discoideum GN=impact PE=3 SV=1	Back alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Alignment Graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		210
449451395		248	PREDICTED: IMPACT family member in pol 5	0.995	0.842	0.827	1e-100
363806926		236	uncharacterized protein LOC100820330 [Gl	0.985	0.877	0.797	1e-95
255579708		237	conserved hypothetical protein [Ricinus	0.961	0.852	0.819	2e-95
359496744		237	PREDICTED: IMPACT family member in pol 5	0.971	0.860	0.774	1e-91
359495663		207	PREDICTED: IMPACT family member in pol 5	0.971	0.985	0.769	2e-91
297735921		237	unnamed protein product [Vitis vinifera]	0.971	0.860	0.769	3e-91
21553936		234	unknown [Arabidopsis thaliana]	0.966	0.867	0.759	2e-88
18420173		234	ribosomal protein S5 domain 2-like famil	0.966	0.867	0.754	5e-88
4467115		204	putative protein [Arabidopsis thaliana]	0.952	0.980	0.761	8e-88
224097192		216	predicted protein [Populus trichocarpa]	0.990	0.962	0.735	1e-87

>gi\|449451395\|ref\|XP_004143447.1\| PREDICTED: IMPACT family member in pol 5'region-like [Cucumis sativus] gi\|449518849\|ref\|XP_004166448.1\| PREDICTED: IMPACT family member in pol 5'region-like [Cucumis sativus]	Back alignment and taxonomy information

 Score =  368 bits (945), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 173/209 (82%), Positives = 190/209 (90%)

Query: 1   MVTSGSSSNNNAGAFTTIKETVTFEKEIKKSKFIAIAGPISNEQSAQSFLSQVSDPRATH 60
           MV + SSS  NAGA+TTIKE V FEKEIKKSKFIAIAGP+S+EQSA SFLSQV DPRATH
Sbjct: 39  MVATASSSTPNAGAYTTIKEIVRFEKEIKKSKFIAIAGPVSSEQSAFSFLSQVRDPRATH 98

Query: 61  NCWAYKVGNQYRSNDDGEPSGTAGKPIHSAIVSSGLDRIMVVVTRYFGGIKLGTGGLVRA 120
           NCWAY+VG+QYRSNDDGEPSGTAGKPIHSAIVSSG+DR+MVVV RYFGGIKLGTGGLVRA
Sbjct: 99  NCWAYQVGDQYRSNDDGEPSGTAGKPIHSAIVSSGIDRVMVVVIRYFGGIKLGTGGLVRA 158

Query: 121 YGGVASECLRNAPTILVKSRVPMGVEVPFELLGILYHQLQLFQVEDTNQDYDTGKDGIAM 180
           YGGVASECL++A T +VKS+VPMGVEVPF+LLG+LYHQLQ FQVED  QDYD+GKDGI M
Sbjct: 159 YGGVASECLKSAQTCVVKSKVPMGVEVPFDLLGVLYHQLQSFQVEDIKQDYDSGKDGITM 218

Query: 181 VTFKVDFDRAENLEDAIKNNCRRDLVFYK 209
           VTFKVDFD  E LEDAIK+NC R+LVFYK
Sbjct: 219 VTFKVDFDCVEKLEDAIKSNCSRELVFYK 247

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi\|363806926\|ref\|NP_001242306.1\| uncharacterized protein LOC100820330 [Glycine max] gi\|255641591\|gb\|ACU21068.1\| unknown [Glycine max]	Back alignment and taxonomy information

>gi\|255579708\|ref\|XP_002530693.1\| conserved hypothetical protein [Ricinus communis] gi\|223529749\|gb\|EEF31688.1\| conserved hypothetical protein [Ricinus communis]	Back alignment and taxonomy information

>gi\|359496744\|ref\|XP_002272328.2\| PREDICTED: IMPACT family member in pol 5'region-like [Vitis vinifera] gi\|297742808\|emb\|CBI35524.3\| unnamed protein product [Vitis vinifera]	Back alignment and taxonomy information

>gi\|359495663\|ref\|XP_003635051.1\| PREDICTED: IMPACT family member in pol 5'region-like [Vitis vinifera]	Back alignment and taxonomy information

>gi\|297735921\|emb\|CBI18697.3\| unnamed protein product [Vitis vinifera]	Back alignment and taxonomy information

>gi\|21553936\|gb\|AAM63017.1\| unknown [Arabidopsis thaliana]	Back alignment and taxonomy information

>gi\|18420173\|ref\|NP_568034.1\| ribosomal protein S5 domain 2-like family protein [Arabidopsis thaliana] gi\|222423476\|dbj\|BAH19708.1\| AT4G38090 [Arabidopsis thaliana] gi\|332661473\|gb\|AEE86873.1\| ribosomal protein S5 domain 2-like family protein [Arabidopsis thaliana]	Back alignment and taxonomy information

>gi\|4467115\|emb\|CAB37549.1\| putative protein [Arabidopsis thaliana] gi\|7270792\|emb\|CAB80474.1\| putative protein [Arabidopsis thaliana]	Back alignment and taxonomy information

>gi\|224097192\|ref\|XP_002310870.1\| predicted protein [Populus trichocarpa] gi\|222853773\|gb\|EEE91320.1\| predicted protein [Populus trichocarpa]	Back alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Alignment graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		210
TAIR\|locus:2121046		234	AT4G38090 "AT4G38090" [Arabido	0.928	0.833	0.770	6.8e-79
UNIPROTKB\|Q889H9		197	PSPTO_0770 "Uncharacterized pr	0.904	0.964	0.398	9.2e-36
UNIPROTKB\|Q602U2		200	MCA2969 "Putative uncharacteri	0.871	0.915	0.446	2e-33
UNIPROTKB\|Q81X18		211	BAS5046 "Uncharacterized prote	0.695	0.691	0.430	8.4e-26
UNIPROTKB\|Q97N58		211	SP_2209 "Putative uncharacteri	0.847	0.843	0.359	8.4e-26
TIGR_CMR\|BA_5431		211	BA_5431 "conserved hypothetica	0.695	0.691	0.430	8.4e-26
UNIPROTKB\|Q9KNI2		210	VC_2757 "Putative uncharacteri	0.723	0.723	0.383	7.6e-25
TIGR_CMR\|VC_2757		210	VC_2757 "conserved hypothetica	0.723	0.723	0.383	7.6e-25
UNIPROTKB\|Q3AE38		220	CHY_0742 "Putative uncharacter	0.642	0.613	0.442	1.2e-24
TIGR_CMR\|CHY_0742		220	CHY_0742 "conserved hypothetic	0.642	0.613	0.442	1.2e-24

TAIR\|locus:2121046 AT4G38090 "AT4G38090" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

 Score = 793 (284.2 bits), Expect = 6.8e-79, P = 6.8e-79
 Identities = 151/196 (77%), Positives = 173/196 (88%)

Query:    15 FTTIKETVTFEKEIKKSKFIAIAGPISNEQSAQSFLSQVSDPRATHNCWAYKVGNQY-RS 73
             FTT+KETV+ EKEIKKSKFIAIAGPIS+EQSAQ FLSQV DPRA+HNCWAYK+G+ + R 
Sbjct:    38 FTTLKETVSVEKEIKKSKFIAIAGPISSEQSAQMFLSQVRDPRASHNCWAYKIGDHHHRC 97

Query:    74 NDDGEPSGTAGKPIHSAIVSSGLDRIMVVVTRYFGGIKLGTGGLVRAYGGVASECLRNAP 133
             +DDGEPSGTAGKPI SAI+SSGLDR+MVVV RYFGGIKLGTGGLVRAYGGV S+CL+ AP
Sbjct:    98 SDDGEPSGTAGKPIQSAILSSGLDRVMVVVIRYFGGIKLGTGGLVRAYGGVTSDCLKTAP 157

Query:   134 TILVKSRVPMGVEVPFELLGILYHQLQLFQVEDTNQDYDTGKDGIAMVTFKVDFDRAENL 193
             + LVKS+V MGVEV F+LLG+LY+QLQ    ED  +DYDTGKDG AMV+FKV+FD  + L
Sbjct:   158 SCLVKSKVQMGVEVTFDLLGVLYNQLQSCHAEDIKEDYDTGKDGTAMVSFKVEFDLVDKL 217

Query:   194 EDAIKNNCRRDLVFYK 209
             EDAIK+NCRRDLVFYK
Sbjct:   218 EDAIKSNCRRDLVFYK 233

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

UNIPROTKB\|Q889H9 PSPTO_0770 "Uncharacterized protein" [Pseudomonas syringae pv. tomato str. DC3000 (taxid:223283)]	Back alignment and assigned GO terms

UNIPROTKB\|Q602U2 MCA2969 "Putative uncharacterized protein" [Methylococcus capsulatus str. Bath (taxid:243233)]	Back alignment and assigned GO terms

UNIPROTKB\|Q81X18 BAS5046 "Uncharacterized protein" [Bacillus anthracis (taxid:1392)]	Back alignment and assigned GO terms

UNIPROTKB\|Q97N58 SP_2209 "Putative uncharacterized protein" [Streptococcus pneumoniae TIGR4 (taxid:170187)]	Back alignment and assigned GO terms

TIGR_CMR\|BA_5431 BA_5431 "conserved hypothetical protein TIGR00257" [Bacillus anthracis str. Ames (taxid:198094)]	Back alignment and assigned GO terms

UNIPROTKB\|Q9KNI2 VC_2757 "Putative uncharacterized protein" [Vibrio cholerae O1 biovar El Tor str. N16961 (taxid:243277)]	Back alignment and assigned GO terms

TIGR_CMR\|VC_2757 VC_2757 "conserved hypothetical protein" [Vibrio cholerae O1 biovar El Tor (taxid:686)]	Back alignment and assigned GO terms

UNIPROTKB\|Q3AE38 CHY_0742 "Putative uncharacterized protein" [Carboxydothermus hydrogenoformans Z-2901 (taxid:246194)]	Back alignment and assigned GO terms

TIGR_CMR\|CHY_0742 CHY_0742 "conserved hypothetical protein TIGR00257" [Carboxydothermus hydrogenoformans Z-2901 (taxid:246194)]	Back alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	GSVIVG00011461001	SubName- Full=Chromosome undetermined scaffold_310, whole genome shotgun sequence; (237 aa)
		(Vitis vinifera)
Predicted Functional Partners:
	GSVIVG00037524001	SubName- Full=Chromosome undetermined scaffold_89, whole genome shotgun sequence; (396 aa)	•			0.633
	GSVIVG00026840001	SubName- Full=Chromosome chr15 scaffold_40, whole genome shotgun sequence; (230 aa)	•			0.540
	GSVIVG00038228001	SubName- Full=Chromosome chr14 scaffold_9, whole genome shotgun sequence; (344 aa)	•			0.513
	GSVIVG00016575001	SubName- Full=Chromosome chr11 scaffold_13, whole genome shotgun sequence; (489 aa)	•			0.513
	GSVIVG00032422001	SubName- Full=Chromosome chr4 scaffold_6, whole genome shotgun sequence; (248 aa)	•		•	0.490
	GSVIVG00015270001	SubName- Full=Chromosome chr18 scaffold_1, whole genome shotgun sequence; (752 aa)	•			0.472
	GSVIVG00017221001	SubName- Full=Chromosome chr11 scaffold_14, whole genome shotgun sequence; (583 aa)	•			0.435
	GSVIVG00029467001	SubName- Full=Chromosome chr13 scaffold_48, whole genome shotgun sequence; (416 aa)	•			0.421
	GSVIVG00014548001	SubName- Full=Chromosome chr18 scaffold_1, whole genome shotgun sequence; (459 aa)	•			0.420
	GSVIVG00027378001	SubName- Full=Chromosome chr19 scaffold_4, whole genome shotgun sequence; (347 aa)	•	•		0.407

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Alignment Graph	Length	Definition	E-value
Query		210
COG1739		203	COG1739, COG1739, Uncharacterized conserved protei	4e-55
pfam01205		110	pfam01205, UPF0029, Uncharacterized protein family	3e-53
TIGR00257		204	TIGR00257, IMPACT_YIGZ, uncharacterized protein, Y	4e-43
PRK11568		204	PRK11568, PRK11568, hypothetical protein; Provisio	3e-40

>gnl\|CDD\|224653 COG1739, COG1739, Uncharacterized conserved protein [Function unknown]	Back alignment and domain information

 Score =  173 bits (441), Expect = 4e-55
 Identities = 74/199 (37%), Positives = 101/199 (50%), Gaps = 9/199 (4%)

Query: 15  FTTIKETVTFEKEIKKSKFIAIAGPISNEQSAQSFLSQV--SDPRATHNCWAYKVGN--- 69
           + T+K + T E+EIKKS+FI  A P+  E  A++F+       P ATHNC A ++G    
Sbjct: 4   YLTLKASFTSEEEIKKSRFINYAKPVEYENEAKAFIDAYKKEHPDATHNCSALRIGKDDS 63

Query: 70  -QYRSNDDGEPSGTAGKPIHSAIVSSGLDRIMVVVTRYFGGIKLGTGGLVRAYGGVASEC 128
                +DDGEPSGTAGKP+ + +  S L  ++VVV RYFGGIKLGTGGLVRAY       
Sbjct: 64  LLQGLSDDGEPSGTAGKPMLAVLEKSDLVNVLVVVVRYFGGIKLGTGGLVRAYANAVKSA 123

Query: 129 LRNAPTILVKSRVPMGVEVPFELLGILYHQLQLFQVEDTNQDYDTGKDGIAMVTFKVDFD 188
           L  A  I  K      V   + +LG+L   L+    +     Y     G  ++T +    
Sbjct: 124 LEAAEAIEKKEAKANHVGCAYRILGLLERLLKQNDDDVEEARY---SGGSVLLTVRFRHI 180

Query: 189 RAENLEDAIKNNCRRDLVF 207
             E +   +K N      F
Sbjct: 181 VIEAVSRLLKGNHIGPDRF 199

Length = 203

>gnl\|CDD\|216363 pfam01205, UPF0029, Uncharacterized protein family UPF0029	Back alignment and domain information

>gnl\|CDD\|129359 TIGR00257, IMPACT_YIGZ, uncharacterized protein, YigZ family	Back alignment and domain information

>gnl\|CDD\|183205 PRK11568, PRK11568, hypothetical protein; Provisional	Back alignment and domain information

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Alignment Graph	Length	Definition	Probability
Query		210
PRK11568		204	hypothetical protein; Provisional	100.0
TIGR00257		204	IMPACT_YIGZ uncharacterized protein, YigZ family.	100.0
COG1739		203	Uncharacterized conserved protein [Function unknow	100.0
PF01205		110	UPF0029: Uncharacterized protein family UPF0029; I	100.0
KOG3299		206	consensus Uncharacterized conserved protein [Funct	99.83
PF09186		56	DUF1949: Domain of unknown function (DUF1949); Int	99.21
KOG3299		206	consensus Uncharacterized conserved protein [Funct	98.96
PF00679		89	EFG_C: Elongation factor G C-terminus; InterPro: I	97.29
cd03711		78	Tet_C Tet_C: C-terminus of ribosomal protection pr	97.05
cd04097		78	mtEFG1_C mtEFG1_C: C-terminus of mitochondrial Elo	96.97
cd03710		79	BipA_TypA_C BipA_TypA_C: a C-terminal portion of B	96.95
PRK12740		668	elongation factor G; Reviewed	96.88
cd03713		78	EFG_mtEFG_C EFG_mtEFG_C: domains similar to the C-	96.85
smart00838		85	EFG_C Elongation factor G C-terminus. This domain	96.84
cd01514		79	Elongation_Factor_C Elongation factor G C-terminus	96.65
PRK13351		687	elongation factor G; Reviewed	96.49
TIGR00490		720	aEF-2 translation elongation factor aEF-2. This mo	96.43
PRK07560		731	elongation factor EF-2; Reviewed	96.41
PLN00116		843	translation elongation factor EF-2 subunit; Provis	96.38
cd04096		80	eEF2_snRNP_like_C eEF2_snRNP_like_C: this family r	96.31
PRK00007		693	elongation factor G; Reviewed	96.21
PRK12739		691	elongation factor G; Reviewed	96.14
cd03709		80	lepA_C lepA_C: This family represents the C-termin	96.13
cd04098		80	eEF2_C_snRNP eEF2_C_snRNP: This family includes a	96.02
TIGR00484		689	EF-G translation elongation factor EF-G. After pep	95.81
PTZ00416		836	elongation factor 2; Provisional	95.79
TIGR00291		231	RNA_SBDS rRNA metabolism protein, SBDS family. Thi	92.96
PRK13760		231	putative RNA-associated protein; Provisional	92.6
KOG0465		721	consensus Mitochondrial elongation factor [Transla	92.43
PRK05433		600	GTP-binding protein LepA; Provisional	92.03
TIGR01393		595	lepA GTP-binding protein LepA. LepA (GUF1 in Sacca	90.93
COG0480		697	FusA Translation elongation factors (GTPases) [Tra	88.52
TIGR01394		594	TypA_BipA GTP-binding protein TypA/BipA. This bact	87.91
PF09377		125	SBDS_C: SBDS protein C-terminal domain; InterPro:	86.21
PRK10218		607	GTP-binding protein; Provisional	84.21
COG1500		234	Predicted exosome subunit [Translation, ribosomal	81.9

>PRK11568 hypothetical protein; Provisional	Back alignment and domain information

Probab=100.00  E-value=5.8e-69  Score=460.07  Aligned_cols=192  Identities=32%  Similarity=0.566  Sum_probs=185.3

Q ss_pred             ceeecccCeeeEEEEecceEEEEEeeCCCHHHHHHHHHHhc--CCCCCceeeEEEEcc-----ccCCCCCCCCCCCCChH
Q 028328           14 AFTTIKETVTFEKEIKKSKFIAIAGPISNEQSAQSFLSQVS--DPRATHNCWAYKVGN-----QYRSNDDGEPSGTAGKP   86 (210)
Q Consensus        14 ~y~ti~~~~~~e~~ikkS~Fi~~~~~~~~~~ea~~~l~~~~--~~~A~H~~~Ayr~~~-----~~~~sDDGEPsGtAG~p   86 (210)
                      +|.|+..+.+.|++||||||||+++|++|++||++||+++|  ||+|+|||||||+|.     .+++||||||+||||+|
T Consensus         3 ~y~~~~~~~~~e~~iKkSrFIa~~~~v~s~eea~~~i~~ik~~~~~A~H~c~Ay~ig~~~~~~~~~~sDDGEPsGTAG~P   82 (204)
T PRK11568          3 SYLIPAAPVTVVEEIKKSRFITLLAHTDGVEAAKAFVQSVRAEHPDARHHCWAWVAGAPDDSQQLGFSDDGEPAGTAGKP   82 (204)
T ss_pred             cceeccCCcEEEEEEeCCEEEEEEEecCCHHHHHHHHHHHHhhCCCCceEEEEEEEcCCCCccEecCCCCCCCCCCchHH
Confidence            58999999999999999999999999999999999999998  799999999999985     35899999999999999


Q ss_pred             HHHHHHhCCCceEEEEEEEEecCeeecCcchhhhHHHHHHHHHHhCCeeEEEEEEEEEEEEecCchHHHHHHHhhcCCeE
Q 028328           87 IHSAIVSSGLDRIMVVVTRYFGGIKLGTGGLVRAYGGVASECLRNAPTILVKSRVPMGVEVPFELLGILYHQLQLFQVED  166 (210)
Q Consensus        87 iL~vL~~~~l~nv~vVV~RyfGGikLG~ggL~rAY~~aa~~al~~a~~~~~~~~~~~~l~~~Y~~~~~v~~~l~~~~~~i  166 (210)
                      ||++|++++|+|++|||||||||||||+|||+|||++||++||+.|+++++++...++++++|++.+.++++|+++++++
T Consensus        83 iL~vL~~~~l~nv~vVVtRYFGGikLG~GGLvRAY~~aa~~al~~a~~~~~~~~~~~~i~~~y~~~~~v~~~l~~~~~~i  162 (204)
T PRK11568         83 MLAQLMGSGVGEITAVVVRYYGGILLGTGGLVKAYGGGVQQALRQLTTQRKVPLTEYTLQCEYAQLAGIEALLGQFDGKI  162 (204)
T ss_pred             HHHHHHHCCCccEEEEEEEEcCCcccccchhHHHHHHHHHHHHHhCCeEEEEEeEEEEEEECcchHHHHHHHHHHCCCEE
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EeeeeCCCCCeeEEEEEEEecCCHHHHHHHHHHhcCCceEEee
Q 028328          167 TNQDYDTGKDGIAMVTFKVDFDRAENLEDAIKNNCRRDLVFYK  209 (210)
Q Consensus       167 ~~~~y~~~~~~~v~~~~~v~~~~~~~~~~~L~~~t~G~~~~~~  209 (210)
                      ++++|++    .|++++.+|.++.+.|.++|.++|+|++.+.+
T Consensus       163 ~~~~y~~----~V~~~~~v~~~~~~~~~~~l~~~t~g~~~~~~  201 (204)
T PRK11568        163 VNSEYQA----FVTLRVALPAAKVAEFSAKLADFSRGSLQLLA  201 (204)
T ss_pred             EcceecC----CEEEEEEECHHHHHHHHHHHHHHhCCeEEEEe
Confidence            9999998    49999999999999999999999999988753

>TIGR00257 IMPACT_YIGZ uncharacterized protein, YigZ family	Back alignment and domain information

>COG1739 Uncharacterized conserved protein [Function unknown]	Back alignment and domain information

>PF01205 UPF0029: Uncharacterized protein family UPF0029; InterPro: IPR001498 The Impact protein is a translational regulator that ensures constant high levels of translation under amino acid starvation	Back alignment and domain information

>KOG3299 consensus Uncharacterized conserved protein [Function unknown]	Back alignment and domain information

>PF09186 DUF1949: Domain of unknown function (DUF1949); InterPro: IPR015269 Members of this entry are a set of functionally uncharacterised hypothetical bacterial proteins	Back alignment and domain information

>KOG3299 consensus Uncharacterized conserved protein [Function unknown]	Back alignment and domain information

>PF00679 EFG_C: Elongation factor G C-terminus; InterPro: IPR000640 Translation elongation factors are responsible for two main processes during protein synthesis on the ribosome [, , ]	Back alignment and domain information

>cd03711 Tet_C Tet_C: C-terminus of ribosomal protection proteins Tet(M) and Tet(O)	Back alignment and domain information

>cd04097 mtEFG1_C mtEFG1_C: C-terminus of mitochondrial Elongation factor G1 (mtEFG1)-like proteins found in eukaryotes	Back alignment and domain information

>cd03710 BipA_TypA_C BipA_TypA_C: a C-terminal portion of BipA or TypA having homology to the C terminal domains of the elongation factors EF-G and EF-2	Back alignment and domain information

>PRK12740 elongation factor G; Reviewed	Back alignment and domain information

>cd03713 EFG_mtEFG_C EFG_mtEFG_C: domains similar to the C-terminal domain of the bacterial translational elongation factor (EF) EF-G	Back alignment and domain information

>smart00838 EFG_C Elongation factor G C-terminus	Back alignment and domain information

>cd01514 Elongation_Factor_C Elongation factor G C-terminus	Back alignment and domain information

>PRK13351 elongation factor G; Reviewed	Back alignment and domain information

>TIGR00490 aEF-2 translation elongation factor aEF-2	Back alignment and domain information

>PRK07560 elongation factor EF-2; Reviewed	Back alignment and domain information

>PLN00116 translation elongation factor EF-2 subunit; Provisional	Back alignment and domain information

>cd04096 eEF2_snRNP_like_C eEF2_snRNP_like_C: this family represents a C-terminal domain of eukaryotic elongation factor 2 (eEF-2) and a homologous domain of the spliceosomal human 116kD U5 small nuclear ribonucleoprotein (snRNP) protein (U5-116 kD) and, its yeast counterpart Snu114p	Back alignment and domain information

>PRK00007 elongation factor G; Reviewed	Back alignment and domain information

>PRK12739 elongation factor G; Reviewed	Back alignment and domain information

>cd03709 lepA_C lepA_C: This family represents the C-terminal region of LepA, a GTP-binding protein localized in the cytoplasmic membrane	Back alignment and domain information

>cd04098 eEF2_C_snRNP eEF2_C_snRNP: This family includes a C-terminal portion of the spliceosomal human 116kD U5 small nuclear ribonucleoprotein (snRNP) protein (U5-116 kD) and, its yeast counterpart Snu114p	Back alignment and domain information

>TIGR00484 EF-G translation elongation factor EF-G	Back alignment and domain information

>PTZ00416 elongation factor 2; Provisional	Back alignment and domain information

>TIGR00291 RNA_SBDS rRNA metabolism protein, SBDS family	Back alignment and domain information

>PRK13760 putative RNA-associated protein; Provisional	Back alignment and domain information

>KOG0465 consensus Mitochondrial elongation factor [Translation, ribosomal structure and biogenesis]	Back alignment and domain information

>PRK05433 GTP-binding protein LepA; Provisional	Back alignment and domain information

>TIGR01393 lepA GTP-binding protein LepA	Back alignment and domain information

>COG0480 FusA Translation elongation factors (GTPases) [Translation, ribosomal structure and biogenesis]	Back alignment and domain information

>TIGR01394 TypA_BipA GTP-binding protein TypA/BipA	Back alignment and domain information

>PF09377 SBDS_C: SBDS protein C-terminal domain; InterPro: IPR018978 This entry represents the C-terminal domain of proteins that are highly conserved in species ranging from archaea to vertebrates and plants []	Back alignment and domain information

>PRK10218 GTP-binding protein; Provisional	Back alignment and domain information

>COG1500 Predicted exosome subunit [Translation, ribosomal structure and biogenesis]	Back alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Alignment Graph	Length	Definition	E-value
Query		210
2cve_A		191	Crystal Structure Of A Conserved Hypothetical Prote		1e-42
1vi7_A		217	Crystal Structure Of An Hypothetical Protein Length		2e-15

>pdb|2CVE|A Chain A, Crystal Structure Of A Conserved Hypothetical Protein Tt1547 From Thermus Thermophilus Hb8 Length = 191

Back alignment and structure

Iteration: 1

Score = 169 bits (428), Expect = 1e-42, Method: Compositional matrix adjust. Identities = 79/144 (54%), Positives = 107/144 (74%) Query: 17 TIKETVTFEKEIKKSKFIAIAGPISNEQSAQSFLSQVSDPRATHNCWAYKVGNQYRSNDD 76 T+ + V +E+EI+KS+FIA A P+++E+ A +FL++ +P ATHN AYK+G YR +DD Sbjct: 4 TLADKVVYEEEIQKSRFIAKAAPVASEEEALAFLAENREPEATHNGHAYKIGLLYRFSDD 63 Query: 77 GEPSGTAGKPIHSAIVSSGLDRIMVVVTRYFGGIKLGTGGLVRAYGGVASECLRNAPTIL 136 GEPSGTAG+PI AI + GLDR+ V+V RYFGG+KLG GGLVRAYGGVA+E LR AP + Sbjct: 64 GEPSGTAGRPILHAIEAQGLDRVAVLVVRYFGGVKLGAGGLVRAYGGVAAEALRRAPKVP 123 Query: 137 VKSRVPMGVEVPFELLGILYHQLQ 160 + RV + VPF +G +Y L+ Sbjct: 124 LVERVGLAFLVPFAEVGRVYALLE 147

PyMOL of 2cve

>pdb|1VI7|A Chain A, Crystal Structure Of An Hypothetical Protein Length = 217

Back alignment and structure

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Alignment Graph	Length	Definition	E-value
Query		210
2cve_A		191	Hypothetical protein TTHA1053; COG1739, UPF0029, s	2e-71
1vi7_A		217	Hypothetical protein YIGZ; structural genomics, un	8e-63

>2cve_A Hypothetical protein TTHA1053; COG1739, UPF0029, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: TLA; 1.60A {Thermus thermophilus} SCOP: d.14.1.11 d.58.11.2 Length = 191	Back alignment and structure

 Score =  214 bits (546), Expect = 2e-71
 Identities = 83/186 (44%), Positives = 116/186 (62%), Gaps = 4/186 (2%)

Query: 17  TIKETVTFEKEIKKSKFIAIAGPISNEQSAQSFLSQVSDPRATHNCWAYKVGNQYRSNDD 76
           T+ + V +E+EI+KS+FIA A P+++E+ A +FL++  +P ATHN  AYK+G  YR +DD
Sbjct: 4   TLADKVVYEEEIQKSRFIAKAAPVASEEEALAFLAENREPEATHNGHAYKIGLLYRFSDD 63

Query: 77  GEPSGTAGKPIHSAIVSSGLDRIMVVVTRYFGGIKLGTGGLVRAYGGVASECLRNAPTIL 136
           GEPSGTAG+PI  AI + GLDR+ V+V RYFGG+KLG GGLVRAYGGVA+E LR AP + 
Sbjct: 64  GEPSGTAGRPILHAIEAQGLDRVAVLVVRYFGGVKLGAGGLVRAYGGVAAEALRRAPKVP 123

Query: 137 VKSRVPMGVEVPFELLGILYHQLQLFQVEDTNQDYDTGKDGIAMVTFKVDFDRAENLEDA 196
           +  RV +   VPF  +G +Y  L+   ++        G          +     E    A
Sbjct: 124 LVERVGLAFLVPFAEVGRVYALLEARALKAEETYTPEG----VRFALLLPKPEREGFLRA 179

Query: 197 IKNNCR 202
           + +  R
Sbjct: 180 LLDATR 185

PyMOL of 2cve

>1vi7_A Hypothetical protein YIGZ; structural genomics, unknown function; 2.80A {Escherichia coli} SCOP: d.14.1.11 d.58.11.2 Length = 217	Back alignment and structure

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Alignment Graph	Length	Definition	Probability
Query		210
1vi7_A		217	Hypothetical protein YIGZ; structural genomics, un	100.0
2cve_A		191	Hypothetical protein TTHA1053; COG1739, UPF0029, s	100.0
3lh2_S		76	4E10_1VI7A_S0_002_N (T88); epitope-scaffold, immun	99.13
2dy1_A		665	Elongation factor G; translocation, GTP complex, s	96.63
2xex_A		693	Elongation factor G; GTPase, translation, biosynth	96.56
1dar_A		691	EF-G, elongation factor G; ribosomal translocase,	96.53
4fn5_A		709	EF-G 1, elongation factor G 1; translation, transl	96.33
2rdo_7		704	EF-G, elongation factor G; elongation factor G, EF	96.25
1n0u_A		842	EF-2, elongation factor 2; G-protein, CIS-proline,	96.14
3j25_A		638	Tetracycline resistance protein TETM; antibiotic r	95.75
3l24_A		517	XAA-Pro dipeptidase; PITA-bread, detoxification, h	95.41
3e3x_A		332	BIPA; MCSG,PSI2, structural genomics, protein stru	93.42
1t95_A		240	Hypothetical protein AF0491; shwachman-bodian-diam	93.01
2wbm_A		252	MTHSBDS, ribosome maturation protein SDO1 homolog;	91.91
3cb4_D		599	GTP-binding protein LEPA; GTPase, OB-fold, membran	91.87
2ywe_A		600	GTP-binding protein LEPA; G domain, beta-barrel, f	91.28
2kdo_A		252	Ribosome maturation protein SBDS; SBDS protein, pr	82.63

>1vi7_A Hypothetical protein YIGZ; structural genomics, unknown function; 2.80A {Escherichia coli} SCOP: d.14.1.11 d.58.11.2	Back alignment and structure

Probab=100.00  E-value=1.2e-65  Score=441.90  Aligned_cols=191  Identities=32%  Similarity=0.535  Sum_probs=183.9

Q ss_pred             ceeecccCeeeEEEEecceEEEEEeeCCCHHHHHHHHHHhc--CCCCCceeeEEEEcc-----ccCCCCCCCCCCCCChH
Q 028328           14 AFTTIKETVTFEKEIKKSKFIAIAGPISNEQSAQSFLSQVS--DPRATHNCWAYKVGN-----QYRSNDDGEPSGTAGKP   86 (210)
Q Consensus        14 ~y~ti~~~~~~e~~ikkS~Fi~~~~~~~~~~ea~~~l~~~~--~~~A~H~~~Ayr~~~-----~~~~sDDGEPsGtAG~p   86 (210)
                      .|+||.++.+.|++||||||||+++|++|++||++||+++|  ||+|+|||||||++.     .+++||||||+||||+|
T Consensus         6 ~y~ti~~~~~~e~~ikkSrFia~~~~v~s~~ea~~~i~~lk~~~~~AtHnc~Ay~~g~~~~~~~~~~sDDGEp~GTAG~p   85 (217)
T 1vi7_A            6 SWLIPAAPVTVVEEIKKSRFITMLAHTDGVEAAKAFVESVRAEHPDARHHCVAWVAGAPDDSQQLGFSDDGEPAGTAGKP   85 (217)
T ss_dssp             CEEEESSCEEEEEEETTEEEEEEEEECCHHHHHHHHHHHHHHHCTTCSBCCEEEECCSCSSSCCCEEECTTSCTTSSSHH
T ss_pred             CceecccCceEEEEEeCcEEEEEEEecCCHHHHHHHHHHHHHhcCCCCCeEEEEEEecCCcccEeccCCCCCCCCcchHH
Confidence            59999999999999999999999999999999999999997  799999999999975     24789999999999999


Q ss_pred             HHHHHHhCCCceEEEEEEEEecCeeecCcchhhhHHHHHHHHHHhCCeeEEEEEEEEEEEEecCchHHHHHHHhhcCCeE
Q 028328           87 IHSAIVSSGLDRIMVVVTRYFGGIKLGTGGLVRAYGGVASECLRNAPTILVKSRVPMGVEVPFELLGILYHQLQLFQVED  166 (210)
Q Consensus        87 iL~vL~~~~l~nv~vVV~RyfGGikLG~ggL~rAY~~aa~~al~~a~~~~~~~~~~~~l~~~Y~~~~~v~~~l~~~~~~i  166 (210)
                      ||++|+..+|+||+|||||||||||||+|||+|||+++|++||+.++++++++...+.++++|++.+.++++|++++++|
T Consensus        86 iL~~L~~~~l~nv~vVVtRyfGGikLG~ggLvraY~~aa~~aL~~~~~v~~~~~~~~~i~~~Y~~~~~v~~~l~~~~~~i  165 (217)
T 1vi7_A           86 MLAQLMGSGVGEITAVVVRYYGGILLGTGGLVKAYGGGVNQALRQLTTQRKTPLTEYTLQCEYHQLTGIEALLGQCDGKI  165 (217)
T ss_dssp             HHHHHHHHTCCSEEEECCEECCSCCCCHHHHHHHHHHHHHHHHTTCCEEEECCCEEEEEEECTTTHHHHHHHHHHTTCEE
T ss_pred             HHHHHHHcCCCCEEEEEEEEeCCceecccHHHHHHHHHHHHHHHhCCeEEEeeeeEEEEEEccchHHHHHHHHHHCCCEE
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EeeeeCCCCCeeEEEEEEEecCCHHHHHHHHHHhcCCceEEe
Q 028328          167 TNQDYDTGKDGIAMVTFKVDFDRAENLEDAIKNNCRRDLVFY  208 (210)
Q Consensus       167 ~~~~y~~~~~~~v~~~~~v~~~~~~~~~~~L~~~t~G~~~~~  208 (210)
                      ++++|++    .|++++.+|.++.+.|.++|+++|+|++.+.
T Consensus       166 ~~~~y~~----~V~~~l~v~~~~~~~~~~~l~~~t~G~~~~~  203 (217)
T 1vi7_A          166 INSDYQA----FVLLRVALPAAKVAEFSAKLADFSRGSLQLL  203 (217)
T ss_dssp             EEEEESS----SEEEEEEECSSTHHHHHHHHHHHHTTCCCCE
T ss_pred             EceEecC----CEEEEEEECHHHHHHHHHHHHHHhCCeEEEE
Confidence            9999997    4999999999999999999999999998754

PyMOL of 1vi7

>2cve_A Hypothetical protein TTHA1053; COG1739, UPF0029, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: TLA; 1.60A {Thermus thermophilus} SCOP: d.14.1.11 d.58.11.2	Back alignment and structure

>3lh2_S 4E10_1VI7A_S0_002_N (T88); epitope-scaffold, immune system; 2.65A {Artificial gene}	Back alignment and structure

>2dy1_A Elongation factor G; translocation, GTP complex, structural genomics, NPPSFA; HET: GTP; 1.60A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1wdt_A*	Back alignment and structure

>2xex_A Elongation factor G; GTPase, translation, biosynthetic protein; 1.90A {Staphylococcus aureus}	Back alignment and structure

>1dar_A EF-G, elongation factor G; ribosomal translocase, translational GTPase; HET: GDP; 2.40A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 PDB: 1elo_A 1ktv_A 2om7_L* 2wri_Y* 2wrk_Y* 2xsy_Y* 2xuy_Y* 2j7k_A* 2efg_A* 1jqm_B 1efg_A* 1fnm_A* 1pn6_A 2bm1_A* 2bm0_A* 2bv3_A* 3izp_E 1zn0_B 1jqs_C 2bcw_C ...	Back alignment and structure

>4fn5_A EF-G 1, elongation factor G 1; translation, translation-antibiotic compl; HET: 0UO; 2.90A {Pseudomonas aeruginosa}	Back alignment and structure

>2rdo_7 EF-G, elongation factor G; elongation factor G, EF-G, RRF, GDPNP, 50S subunit, cryo-EM, REAL-space refinement, ribonucleoprotein; 9.10A {Escherichia coli} PDB: 3j0e_H	Back alignment and structure

>1n0u_A EF-2, elongation factor 2; G-protein, CIS-proline, translation; HET: SO1; 2.12A {Saccharomyces cerevisiae} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1n0v_C 1s1h_T 2e1r_A* 2npf_A* 2p8w_T* 3dny_T 3b82_A* 1zm2_A* 1zm3_A* 1zm4_A* 1zm9_A* 2p8x_T* 2p8y_T* 2p8z_T* 2zit_A* 1u2r_A* 3b78_A* 3b8h_A*	Back alignment and structure

>3j25_A Tetracycline resistance protein TETM; antibiotic resistance, translation; HET: GCP; 7.20A {Enterococcus faecalis}	Back alignment and structure

>3l24_A XAA-Pro dipeptidase; PITA-bread, detoxification, hydrolase, manganese, metal-binding, metalloprotease, protease; 2.30A {Alteromonas SP} PDB: 3l7g_A*	Back alignment and structure

>3e3x_A BIPA; MCSG,PSI2, structural genomics, protein struct initiative, midwest center for structural genomics, GTP-BIN nucleotide-binding; HET: MLZ MLY; 1.95A {Vibrio parahaemolyticus}	Back alignment and structure

>1t95_A Hypothetical protein AF0491; shwachman-bodian-diamond syndrome protein orthologue, unknown function; 1.90A {Archaeoglobus fulgidus} SCOP: a.5.8.1 d.235.1.2 d.58.11.3 PDB: 1p9q_C	Back alignment and structure

>2wbm_A MTHSBDS, ribosome maturation protein SDO1 homolog; shwachman-bodian-diamond syndrome protein; 1.75A {Methanothermobacter thermautotrophicusorganism_taxid}	Back alignment and structure

>3cb4_D GTP-binding protein LEPA; GTPase, OB-fold, membrane, nucleotide-binding, translation; 2.80A {Escherichia coli} PDB: 3deg_C*	Back alignment and structure

>2ywe_A GTP-binding protein LEPA; G domain, beta-barrel, ferredoxin-like domain, structural GE NPPSFA; 2.05A {Aquifex aeolicus} PDB: 2ywf_A* 2ywg_A* 2ywh_A*	Back alignment and structure

>2kdo_A Ribosome maturation protein SBDS; SBDS protein, protein structure, RNA-interacting protein mutation, phosphoprotein, ribosome biogenesis; NMR {Homo sapiens} PDB: 2l9n_A	Back alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Alignment Graph	Length	Definition	E-value
Query		210
d2cvea1		123	d.14.1.11 (A:2-124) Hypothetical protein TTHA1053,	2e-57
d1vi7a1		135	d.14.1.11 (A:3-137) Hypothetical protein YigZ, N-t	2e-54

>d2cvea1 d.14.1.11 (A:2-124) Hypothetical protein TTHA1053, N-terminal domain {Thermus thermophilus [TaxId: 274]} Length = 123	Back information, alignment and structure


class: Alpha and beta proteins (a+b)
fold: Ribosomal protein S5 domain 2-like
superfamily: Ribosomal protein S5 domain 2-like
family: YigZ N-terminal domain-like
domain: Hypothetical protein TTHA1053, N-terminal domain
species: Thermus thermophilus [TaxId: 274]

 Score =  175 bits (445), Expect = 2e-57
 Identities = 71/119 (59%), Positives = 94/119 (78%)

Query: 17  TIKETVTFEKEIKKSKFIAIAGPISNEQSAQSFLSQVSDPRATHNCWAYKVGNQYRSNDD 76
           T+ + V +E+EI+KS+FIA A P+++E+ A +FL++  +P ATHN  AYK+G  YR +DD
Sbjct: 3   TLADKVVYEEEIQKSRFIAKAAPVASEEEALAFLAENREPEATHNGHAYKIGLLYRFSDD 62

Query: 77  GEPSGTAGKPIHSAIVSSGLDRIMVVVTRYFGGIKLGTGGLVRAYGGVASECLRNAPTI 135
           GEPSGTAG+PI  AI + GLDR+ V+V RYFGG+KLG GGLVRAYGGVA+E LR AP +
Sbjct: 63  GEPSGTAGRPILHAIEAQGLDRVAVLVVRYFGGVKLGAGGLVRAYGGVAAEALRRAPKV 121

PyMOL of d2cvea1

>d1vi7a1 d.14.1.11 (A:3-137) Hypothetical protein YigZ, N-terminal domain {Escherichia coli [TaxId: 562]} Length = 135	Back information, alignment and structure

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Alignment Graph	Length	Definition	Probability
Query		210
d1vi7a1		135	Hypothetical protein YigZ, N-terminal domain {Esch	100.0
d2cvea1		123	Hypothetical protein TTHA1053, N-terminal domain {	100.0
d1vi7a2		71	Hypothetical protein YigZ, C-terminal domain {Esch	99.36
d2dy1a5		96	Elongation factor G (EF-G) {Thermus thermophilus,	97.34
d2bv3a5		89	Elongation factor G (EF-G) {Thermus thermophilus [	97.21
d1t95a3		73	Hypothetical protein AF0491, C-terminal domain {Ar	96.84
d1n0ua5		117	Elongation factor 2 (eEF-2) {Baker's yeast (Saccha	96.03
d2cvea2		67	Hypothetical protein TTHA1053, C-terminal domain {	94.87

>d1vi7a1 d.14.1.11 (A:3-137) Hypothetical protein YigZ, N-terminal domain {Escherichia coli [TaxId: 562]}	Back information, alignment and structure

class: Alpha and beta proteins (a+b)
fold: Ribosomal protein S5 domain 2-like
superfamily: Ribosomal protein S5 domain 2-like
family: YigZ N-terminal domain-like
domain: Hypothetical protein YigZ, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=100.00  E-value=1e-55  Score=354.35  Aligned_cols=127  Identities=43%  Similarity=0.708  Sum_probs=121.2

Q ss_pred             CCcceeecccCeeeEEEEecceEEEEEeeCCCHHHHHHHHHHhc--CCCCCceeeEEEEcc-----ccCCCCCCCCCCCC
Q 028328           11 NAGAFTTIKETVTFEKEIKKSKFIAIAGPISNEQSAQSFLSQVS--DPRATHNCWAYKVGN-----QYRSNDDGEPSGTA   83 (210)
Q Consensus        11 ~~~~y~ti~~~~~~e~~ikkS~Fi~~~~~~~~~~ea~~~l~~~~--~~~A~H~~~Ayr~~~-----~~~~sDDGEPsGtA   83 (210)
                      |.+.|.+|.++.+.|++||||||||+++|+++++|++++|+++|  ||+|+|||||||++.     .+++||||||+|||
T Consensus         1 m~~~y~~~~~~~~~~~eikkSkFia~~~~v~~~~~~~~~l~~lk~~~~~A~H~c~Ayr~~~~~~~~~~~~sDDGEP~GtA   80 (135)
T d1vi7a1           1 LMESWLIPAAPVTVVEEIKKSRFITMLAHTDGVEAAKAFVESVRAEHPDARHHCVAWVAGAPDDSQQLGFSDDGEPAGTA   80 (135)
T ss_dssp             CCSCEEEESSCEEEEEEETTEEEEEEEEECCHHHHHHHHHHHHHHHCTTCSBCCEEEECCSCSSSCCCEEECTTSCTTSS
T ss_pred             CCCcccccCCcEEEEEEEeCCEEEEEEEeCCCHHHHHHHHHHHHhhCCCCceEEEEEEEecCCCceEEeccCCCCcCCCc
Confidence            56789999999999999999999999999999999999999998  899999999999974     34789999999999


Q ss_pred             ChHHHHHHHhCCCceEEEEEEEEecCeeecCcchhhhHHHHHHHHHHhCCeeEE
Q 028328           84 GKPIHSAIVSSGLDRIMVVVTRYFGGIKLGTGGLVRAYGGVASECLRNAPTILV  137 (210)
Q Consensus        84 G~piL~vL~~~~l~nv~vVV~RyfGGikLG~ggL~rAY~~aa~~al~~a~~~~~  137 (210)
                      |+|||++|+++++.|++|||+|||||||||+|||+|||+++|++||+++++.++
T Consensus        81 G~piL~~L~~~~l~nv~vVV~RyFGGikLG~ggL~rAY~~aa~~al~~a~~~~k  134 (135)
T d1vi7a1          81 GKPMLAQLMGSGVGEITAVVVRYYGGILLGTGGLVKAYGGGVNQALRQLTTQRK  134 (135)
T ss_dssp             SHHHHHHHHHHTCCSEEEECCEECCSCCCCHHHHHHHHHHHHHHHHTTCCEEEE
T ss_pred             chHHHHHHHHCCCceEEEEEEEeeCCEecCCchHHHHHHHHHHHHHHhcceeec
Confidence            999999999999999999999999999999999999999999999999998764

PyMOL of d1vi7a1

>d2cvea1 d.14.1.11 (A:2-124) Hypothetical protein TTHA1053, N-terminal domain {Thermus thermophilus [TaxId: 274]}	Back information, alignment and structure

>d1vi7a2 d.58.11.2 (A:138-208) Hypothetical protein YigZ, C-terminal domain {Escherichia coli [TaxId: 562]}	Back information, alignment and structure

>d2dy1a5 d.58.11.1 (A:570-665) Elongation factor G (EF-G) {Thermus thermophilus, EF-G-2 [TaxId: 274]}	Back information, alignment and structure

>d2bv3a5 d.58.11.1 (A:600-688) Elongation factor G (EF-G) {Thermus thermophilus [TaxId: 274]}	Back information, alignment and structure

>d1t95a3 d.58.11.3 (A:162-234) Hypothetical protein AF0491, C-terminal domain {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}	Back information, alignment and structure

>d1n0ua5 d.58.11.1 (A:726-842) Elongation factor 2 (eEF-2) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}	Back information, alignment and structure

>d2cvea2 d.58.11.2 (A:125-191) Hypothetical protein TTHA1053, C-terminal domain {Thermus thermophilus [TaxId: 274]}	Back information, alignment and structure