Citrus Sinensis ID: 028340

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210
MGSGSRGLLLCKSSSSLVFLIPSFTCNNLRFNKTIANSRAHRMATEASSSSSSFTGGDSINPLASSSVNGAAFSSSSSSVIDFLSLCHRLKTTKRAGWVKRNVNNPESIADHMYRMGLMGLIMADIPGIDRDKCIKMAIVHDIAEAIVGDITPSDGIPKEEKSQREREAITYMCKLLGQGARAKEIDELWMEYEENSTAEAKIVKDFDKV
ccccccccEEEccccccEEEccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHcccccccccccccccccHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHccccccccccHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHcccHHHHHHHHHccc
ccccccEEEEEEccccEEEEEccccccHcccccccccccccccccccccccccccccccccccHHHcccccccccccccHHHHHHHHHHHHHccccccHccccccccHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHccccccccccHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHcccHHHHHHHcHccc
mgsgsrglllcksssslvflipsftcnnlrfNKTIANSRAHRmateassssssftggdsinplasssvngaafssssssVIDFLSLCHRLKTTKragwvkrnvnnpesiADHMYRMGLMGLImadipgidrdkcIKMAIVHDIAEAivgditpsdgipkeekSQREREAITYMCKLLGQGARAKEIDELWMEYEENSTAEAKIVKDFDKV
mgsgsrglLLCKSSSSLVFLIPSFTCNNLRFNKTIANSRAHRMATeassssssftGGDSINPLASSSVNGAAFSSSSSSVIDFLSLCHRLKttkragwvkrnvnnpesiADHMYRMGLMGLIMADIPGIDRDKCIKMAIVHDIAEaivgditpsdgipkeeksqreREAITYMCKLLGQGARAKEIDELWMEYeenstaeakivkdfdkv
MGSGSRGLLLCKSSSSLVFLIPSFTCNNLRFNKTIANSRAHRMATEAssssssFTGGDSINPLasssvngaafssssssVIDFLSLCHRLKTTKRAGWVKRNVNNPESIADHMYRMGLMGLIMADIPGIDRDKCIKMAIVHDIAEAIVGDITPSDGIPKEEKSQREREAITYMCKLLGQGARAKEIDELWMEYEENSTAEAKIVKDFDKV
*******LLLCKSSSSLVFLIPSFTCNNLRFNKTIA*******************************************VIDFLSLCHRLKTTKRAGWVKRNVNNPESIADHMYRMGLMGLIMADIPGIDRDKCIKMAIVHDIAEAIVGDIT****************AITYMCKLLGQGARAKEIDELWMEY*****************
*********LCKSSSSLVFLIPSFTCNNLRFN************************************************IDFLSLCHRLKTTKRAGWVKRNVNNPESIADHMYRMGLMGLIMADIPGIDRDKCIKMAIVHDIAEAIVGDITPSDGIPKEEKSQREREAITYMCKLLGQGARAKEIDELWMEYEENSTAEAKIVKDFDKV
MGSGSRGLLLCKSSSSLVFLIPSFTCNNLRFNKTIANSR*****************GDSINPLASSSV***********VIDFLSLCHRLKTTKRAGWVKRNVNNPESIADHMYRMGLMGLIMADIPGIDRDKCIKMAIVHDIAEAIVGDITPSDGI********EREAITYMCKLLGQGARAKEIDELWMEYEENSTAEAKIVKDFDKV
****SRGLLLCKSSSSLVFLIPSFTCNNLRFNKT*******************************************SSVIDFLSLCHRLKTTKRAGWVKRNVNNPESIADHMYRMGLMGLIMADIPGIDRDKCIKMAIVHDIAEAIVGDITPSDGIPKEEKSQREREAITYMCKLLGQGARAKEIDELWMEYEENSTAEAKIVKDFDKV
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
ooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MGSGSRGLLLCKSSSSLVFLIPSFTCNNLRFNKTIANSRAHRMATEASSSSSSFTGGDSINPLASSSVNGAAFSSSSSSVIDFLSLCHRLKTTKRAGWVKRNVNNPESIADHMYRMGLMGLIMADIPGIDRDKCIKMAIVHDIAEAIVGDITPSDGIPKEEKSQREREAITYMCKLLGQGARAKEIDELWMEYEENSTAEAKIVKDFDKV
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query210 2.2.26 [Sep-21-2011]
P87242198 HD domain-containing prot yes no 0.642 0.681 0.503 3e-33
Q1LUI2200 HD domain-containing prot yes no 0.619 0.65 0.477 8e-33
Q66L17201 HD domain-containing prot N/A no 0.638 0.666 0.455 2e-32
Q54FK1190 HD domain-containing prot yes no 0.628 0.694 0.507 9e-32
P53144215 HD domain-containing prot yes no 0.6 0.586 0.453 1e-28
P38331238 HD domain-containing prot no no 0.614 0.542 0.443 1e-27
Q7Z4H3204 HD domain-containing prot yes no 0.676 0.696 0.503 1e-25
Q0P565205 HD domain-containing prot yes no 0.680 0.697 0.470 1e-24
Q3SXD3199 HD domain-containing prot yes no 0.647 0.683 0.507 8e-24
>sp|P87242|YC0H_SCHPO HD domain-containing protein C4G3.17 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPCC4G3.17 PE=3 SV=1 Back     alignment and function desciption
 Score =  141 bits (356), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 70/139 (50%), Positives = 96/139 (69%), Gaps = 4/139 (2%)

Query: 74  SSSSSSVIDFLSLCHRLKTTKRAGWVKRNVNNPESIADHMYRMGLMGLIMADIPGIDRDK 133
           ++ S S++ FL    RLKTT R GW+   +  PESIADHMYRMG++ ++  D P I++++
Sbjct: 3   AAKSLSIVPFLDCLSRLKTTPRTGWLYHGIEKPESIADHMYRMGILTMLCND-PSINKER 61

Query: 134 CIKMAIVHDIAEAIVGDITPSDGIPKEEKSQREREA---ITYMCKLLGQGARAKEIDELW 190
           C+K+A+VHD+AE+IVGDITP + + KEEK + E EA   IT     L    +A+EI EL+
Sbjct: 62  CLKIAVVHDMAESIVGDITPHENVSKEEKHRMESEAMVSITQQLIPLNLSLQAEEIKELF 121

Query: 191 MEYEENSTAEAKIVKDFDK 209
           +EYE  ST EAK VKD DK
Sbjct: 122 LEYESASTPEAKFVKDIDK 140

Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812)
>sp|Q1LUI2|HDDC2_DANRE HD domain-containing protein 2 OS=Danio rerio GN=hddc2 PE=2 SV=1 Back     alignment and function description
>sp|Q66L17|HDDC2_XENLA HD domain-containing protein 2 OS=Xenopus laevis GN=hddc2 PE=2 SV=1 Back     alignment and function description
>sp|Q54FK1|HDDC2_DICDI HD domain-containing protein 2 homolog OS=Dictyostelium discoideum GN=hddc2 PE=3 SV=1 Back     alignment and function description
>sp|P53144|YGK1_YEAST HD domain-containing protein YGL101W OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=YGL101W PE=1 SV=1 Back     alignment and function description
>sp|P38331|YB92_YEAST HD domain-containing protein YBR242W OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=YBR242W PE=1 SV=1 Back     alignment and function description
>sp|Q7Z4H3|HDDC2_HUMAN HD domain-containing protein 2 OS=Homo sapiens GN=HDDC2 PE=1 SV=1 Back     alignment and function description
>sp|Q0P565|HDDC2_BOVIN HD domain-containing protein 2 OS=Bos taurus GN=HDDC2 PE=2 SV=1 Back     alignment and function description
>sp|Q3SXD3|HDDC2_MOUSE HD domain-containing protein 2 OS=Mus musculus GN=Hddc2 PE=2 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query210
255587967230 catalytic, putative [Ricinus communis] g 0.976 0.891 0.703 4e-72
359484823235 PREDICTED: HD domain-containing protein 0.852 0.761 0.640 2e-66
297821635257 metal-dependent phosphohydrolase HD doma 0.961 0.785 0.642 4e-64
42570897257 Metal-dependent phosphohydrolase [Arabid 0.961 0.785 0.637 9e-64
110742669254 hypothetical protein [Arabidopsis thalia 0.961 0.795 0.637 9e-64
3738315243 unknown protein [Arabidopsis thaliana] 0.961 0.831 0.637 9e-64
42569268245 Metal-dependent phosphohydrolase [Arabid 0.961 0.824 0.637 1e-63
297743717196 unnamed protein product [Vitis vinifera] 0.690 0.739 0.775 1e-62
449506227226 PREDICTED: HD domain-containing protein 0.795 0.738 0.686 6e-60
224091859207 predicted protein [Populus trichocarpa] 0.623 0.632 0.824 1e-59
>gi|255587967|ref|XP_002534456.1| catalytic, putative [Ricinus communis] gi|223525255|gb|EEF27927.1| catalytic, putative [Ricinus communis] Back     alignment and taxonomy information
 Score =  276 bits (706), Expect = 4e-72,   Method: Compositional matrix adjust.
 Identities = 154/219 (70%), Positives = 174/219 (79%), Gaps = 14/219 (6%)

Query: 1   MGSGSRGLLLCKSSSSLVFLIPS-FTCNNLRFNKTIANSRA--------HRMATEASSSS 51
           MGSGSR ++LCK+SSSL    P+ FT ++L F   + +S A        HRMATEASSS+
Sbjct: 1   MGSGSR-VVLCKTSSSLNLFAPAAFTASHLSFKSFLLSSPATNYRLHHNHRMATEASSSA 59

Query: 52  SSFTGGDSINPLASSSVNGAAFSSSSSSVIDFLSLCHRLKTTKRAGWVKRNVNNPESIAD 111
           SS   GD++ P   S  N AA  SSSSS IDFLSLCH LK TKRAGW+KR+V NPESIAD
Sbjct: 60  SSVNDGDNVIP---SLANDAA-PSSSSSAIDFLSLCHSLKKTKRAGWIKRDVKNPESIAD 115

Query: 112 HMYRMGLMGLIMADIPGIDRDKCIKMAIVHDIAEAIVGDITPSDGIPKEEKSQREREAIT 171
           HMYRMGLM LI  DIPGIDRDKC+KMAIVHDIAEAIVGDITPSDGIPKEEKS++EREA+ 
Sbjct: 116 HMYRMGLMALIAPDIPGIDRDKCVKMAIVHDIAEAIVGDITPSDGIPKEEKSRKEREALD 175

Query: 172 YMCKLLGQGARAKEIDELWMEYEENSTAEAKIVKDFDKV 210
           +MCKLLG G RAKEI +LWMEYEENS+ EAKIVKDFDKV
Sbjct: 176 HMCKLLGGGLRAKEISQLWMEYEENSSPEAKIVKDFDKV 214

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|359484823|ref|XP_002272377.2| PREDICTED: HD domain-containing protein 2 homolog isoform 1 [Vitis vinifera] Back     alignment and taxonomy information
>gi|297821635|ref|XP_002878700.1| metal-dependent phosphohydrolase HD domain-containing protein [Arabidopsis lyrata subsp. lyrata] gi|297324539|gb|EFH54959.1| metal-dependent phosphohydrolase HD domain-containing protein [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information
>gi|42570897|ref|NP_973522.1| Metal-dependent phosphohydrolase [Arabidopsis thaliana] gi|50253436|gb|AAT71920.1| At2g23820 [Arabidopsis thaliana] gi|58331781|gb|AAW70388.1| At2g23820 [Arabidopsis thaliana] gi|330252401|gb|AEC07495.1| Metal-dependent phosphohydrolase [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|110742669|dbj|BAE99246.1| hypothetical protein [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|3738315|gb|AAC63656.1| unknown protein [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|42569268|ref|NP_179962.3| Metal-dependent phosphohydrolase [Arabidopsis thaliana] gi|330252400|gb|AEC07494.1| Metal-dependent phosphohydrolase [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|297743717|emb|CBI36600.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|449506227|ref|XP_004162687.1| PREDICTED: HD domain-containing protein 2-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|224091859|ref|XP_002309375.1| predicted protein [Populus trichocarpa] gi|222855351|gb|EEE92898.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query210
TAIR|locus:2061421257 AT2G23820 [Arabidopsis thalian 0.961 0.785 0.598 2.7e-59
TAIR|locus:2028746258 AT1G26160 [Arabidopsis thalian 0.619 0.503 0.723 9.5e-50
UNIPROTKB|Q7Z4H3204 HDDC2 "HD domain-containing pr 0.609 0.627 0.515 1.4e-32
UNIPROTKB|F1S2V3205 HDDC2 "Uncharacterized protein 0.609 0.624 0.515 2.9e-32
UNIPROTKB|Q0P565205 HDDC2 "HD domain-containing pr 0.609 0.624 0.5 7.7e-32
MGI|MGI:1916942199 Hddc2 "HD domain containing 2" 0.609 0.643 0.515 9.8e-32
UNIPROTKB|F1N9Z8199 HDDC2 "Uncharacterized protein 0.609 0.643 0.515 1.6e-31
ZFIN|ZDB-GENE-050522-394200 hddc2 "HD domain containing 2" 0.614 0.645 0.480 1.6e-31
POMBASE|SPCC4G3.17198 SPCC4G3.17 "HD domain metal de 0.614 0.651 0.511 2e-31
RGD|1307562199 Hddc2 "HD domain containing 2" 0.609 0.643 0.507 2.6e-31
TAIR|locus:2061421 AT2G23820 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 608 (219.1 bits), Expect = 2.7e-59, P = 2.7e-59
 Identities = 122/204 (59%), Positives = 146/204 (71%)

Query:     8 LLLCKSSSSLVFLIPSFTCNNLRFNKTIANSRAHRMATEAXXXXXXFTGGDSIN-PLXXX 66
             +  CKS S LVFL+PSFT +++RF  + A + +   A          +G  S++ P    
Sbjct:     7 VFFCKSLS-LVFLVPSFTRSHIRFTYSAAGASSPNRAIHCMASDSPQSGDGSVSSPPNVA 65

Query:    67 XXXXXXXXXXXXXVIDFLSLCHRLKTTKRAGWVKRNVNNPESIADHMYRMGLMGLIMADI 126
                           IDFLSLC RLKTT RAGW+KR+V +PESIADHMYRMGLM LI +DI
Sbjct:    66 AVPSSSSSSSASSAIDFLSLCTRLKTTPRAGWIKRDVKDPESIADHMYRMGLMALISSDI 125

Query:   127 PGIDRDKCIKMAIVHDIAEAIVGDITPSDGIPKEEKSQREREAITYMCKLLGQGARAKEI 186
             PG++RDKC+KMAIVHDIAEAIVGDITPS GI KEEK++RE EA+ +MCKLLG G RAKEI
Sbjct:   126 PGVNRDKCMKMAIVHDIAEAIVGDITPSCGISKEEKNRRESEALEHMCKLLGGGERAKEI 185

Query:   187 DELWMEYEENSTAEAKIVKDFDKV 210
              ELW EYEENS+ EAK+VKDFDKV
Sbjct:   186 AELWREYEENSSPEAKVVKDFDKV 209
GO:0003824 "catalytic activity" evidence=IEA;ISS
GO:0005634 "nucleus" evidence=ISM
GO:0008081 "phosphoric diester hydrolase activity" evidence=IEA
GO:0046872 "metal ion binding" evidence=IEA
GO:0005829 "cytosol" evidence=IDA
TAIR|locus:2028746 AT1G26160 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
UNIPROTKB|Q7Z4H3 HDDC2 "HD domain-containing protein 2" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|F1S2V3 HDDC2 "Uncharacterized protein" [Sus scrofa (taxid:9823)] Back     alignment and assigned GO terms
UNIPROTKB|Q0P565 HDDC2 "HD domain-containing protein 2" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
MGI|MGI:1916942 Hddc2 "HD domain containing 2" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
UNIPROTKB|F1N9Z8 HDDC2 "Uncharacterized protein" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
ZFIN|ZDB-GENE-050522-394 hddc2 "HD domain containing 2" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
POMBASE|SPCC4G3.17 SPCC4G3.17 "HD domain metal dependent phosphohydrolase (predicted)" [Schizosaccharomyces pombe (taxid:4896)] Back     alignment and assigned GO terms
RGD|1307562 Hddc2 "HD domain containing 2" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q3SXD3HDDC2_MOUSENo assigned EC number0.50720.64760.6834yesno
Q7Z4H3HDDC2_HUMANNo assigned EC number0.50340.67610.6960yesno
P87242YC0H_SCHPONo assigned EC number0.50350.64280.6818yesno
Q54FK1HDDC2_DICDINo assigned EC number0.50710.62850.6947yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
fgenesh2_kg.4__305__AT2G23820.2
annotation not avaliable (257 aa)
(Arabidopsis lyrata)
Predicted Functional Partners:
 
Sorry, there are no predicted associations at the current settings.
 

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query210
pfam13023163 pfam13023, HD_3, HD domain 8e-51
COG1896193 COG1896, COG1896, Predicted hydrolases of HD super 6e-37
pfam01966111 pfam01966, HD, HD domain 1e-09
smart00471124 smart00471, HDc, Metal dependent phosphohydrolases 6e-04
>gnl|CDD|221899 pfam13023, HD_3, HD domain Back     alignment and domain information 
 Score =  161 bits (410), Expect = 8e-51
 Identities = 47/126 (37%), Positives = 73/126 (57%), Gaps = 4/126 (3%)

Query: 87  CHRLKTTKRAGWVKRNVNNPESIADHMYRMGLMGLIMADI--PGIDRDKCIKMAIVHDIA 144
             +LK  KR GW++     PES+A+H + + LM L++A+    G+D  + IKM ++HD+ 
Sbjct: 1   ADKLKFVKRQGWLQDGSR-PESVAEHSWHVALMALLLAEYAGEGVDIARVIKMLLIHDLV 59

Query: 145 EAIVGDITPSDGIPKEEKSQREREAITYMCKLLGQGARAKEIDELWMEYEENSTAEAKIV 204
           E   GDI   D + K+EK +REREA   +  LL    + +E+  LW E+E   T EA+  
Sbjct: 60  EIDAGDIISPDKLDKKEKEEREREAAERIFGLL-PEDQGEELRALWDEFEAGETPEARFA 118

Query: 205 KDFDKV 210
           K  D++
Sbjct: 119 KALDRL 124

HD domains are metal dependent phosphohydrolases. Length = 163
>gnl|CDD|224808 COG1896, COG1896, Predicted hydrolases of HD superfamily [General function prediction only] Back     alignment and domain information
>gnl|CDD|216815 pfam01966, HD, HD domain Back     alignment and domain information
>gnl|CDD|214679 smart00471, HDc, Metal dependent phosphohydrolases with conserved 'HD' motif Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 210
KOG3197210 consensus Predicted hydrolases of HD superfamily [ 100.0
PF13023165 HD_3: HD domain; PDB: 1XX7_D 2GZ4_B 4DMB_B. 100.0
PRK03826195 5'-nucleotidase; Provisional 100.0
COG1896193 Predicted hydrolases of HD superfamily [General fu 100.0
PF12917215 HD_2: HD containing hydrolase-like enzyme ; PDB: 3 99.9
smart00471124 HDc Metal dependent phosphohydrolases with conserv 97.78
cd00077145 HDc Metal dependent phosphohydrolases with conserv 97.78
PRK10119 231 putative hydrolase; Provisional 97.66
PRK12705508 hypothetical protein; Provisional 97.54
PF01966122 HD: HD domain; InterPro: IPR006674 This domain is 97.48
TIGR03401228 cyanamide_fam HD domain protein, cyanamide hydrata 97.44
TIGR00295164 conserved hypothetical protein TIGR00295. This set 97.33
PRK12703339 tRNA 2'-O-methylase; Reviewed 96.97
PRK12704520 phosphodiesterase; Provisional 96.59
TIGR03319514 YmdA_YtgF conserved hypothetical protein YmdA/YtgF 96.59
COG1418222 Predicted HD superfamily hydrolase [General functi 96.54
PRK00106535 hypothetical protein; Provisional 96.35
TIGR0027780 HDIG uncharacterized domain HDIG. This domain is f 96.13
TIGR00488158 putative HD superfamily hydrolase of NAD metabolis 95.85
PRK07152342 nadD putative nicotinate-nucleotide adenylyltransf 95.45
PRK13480314 3'-5' exoribonuclease YhaM; Provisional 94.58
COG1713187 Predicted HD superfamily hydrolase involved in NAD 92.84
COG2206344 c-di-GMP phosphodiesterase class II (HD-GYP domain 92.49
PF08668196 HDOD: HDOD domain; InterPro: IPR013976 This domain 87.34
COG4341186 Predicted HD phosphohydrolase [General function pr 85.89
TIGR03760218 ICE_TraI_Pfluor integrating conjugative element re 84.5
>KOG3197 consensus Predicted hydrolases of HD superfamily [General function prediction only] Back     alignment and domain information 
Probab=100.00  E-value=9e-43  Score=294.46  Aligned_cols=133  Identities=64%  Similarity=1.085  Sum_probs=128.3

Q ss_pred             cHHHHHHHHHHhHhhcccccCccCCCCCCCCcHHhHHHHHHHHHHHhccCCCCCHHHHHHHHHhhhhhhhhhcCCCCCCC
Q 028340           77 SSSVIDFLSLCHRLKTTKRAGWVKRNVNNPESIADHMYRMGLMGLIMADIPGIDRDKCIKMAIVHDIAEAIVGDITPSDG  156 (210)
Q Consensus        77 ~~~~l~Fl~~l~rLK~i~R~Gw~~~gv~~~ESVAEHSf~vAliA~~la~~~~vD~~Kvv~mAL~HDLaEa~tGDI~~~~~  156 (210)
                      .+++++|+.++++||.++||||+.+||++|||||+|||||+++||++.+ .|+|++||++|||+||++|+++|||+|.++
T Consensus        24 ~~sil~FL~l~~~LK~~~RTGWv~~gv~~pESIadHMYRM~llaml~~d-~~vnr~rC~kiAlVHD~AEslVgditP~~~  102 (210)
T KOG3197|consen   24 SKSILQFLDLLGRLKTTPRTGWVKRGVNEPESIADHMYRMALLAMLIKD-PGVNRERCMKIALVHDIAESLVGDITPSDG  102 (210)
T ss_pred             chHHHHHHHHHHHhccCCCccccccCCCCcchHHHHHHHHHHHHHHhcC-CCcCHHHHHHHHHHHHHHHHHhCCCCCCCC
Confidence            3479999999999999999999999999999999999999999999999 599999999999999999999999999999


Q ss_pred             CChhHhHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhhCCCHHHHHHhhhccC
Q 028340          157 IPKEEKSQREREAITYMCKLLGQGARAKEIDELWMEYEENSTAEAKIVKDFDKV  210 (210)
Q Consensus       157 v~~~~K~~~E~~A~~~L~~~L~p~~l~~e~~~Lw~EyE~~~T~EAklVK~aDKL  210 (210)
                      +++++|+++|-+|++.|+..|+++..++|+.+||.|||+++|+||||||++||+
T Consensus       103 vsKeeK~rre~eamk~ic~~l~~~~~akEi~elw~eYE~~ss~Eak~VKdlDK~  156 (210)
T KOG3197|consen  103 VSKEEKHRREFEAMKYICQLLIGELRAKEITELWLEYEEASSLEAKFVKDLDKF  156 (210)
T ss_pred             ccHHHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHhcCchhHHHHHhhHHH
Confidence            999999999999999999999667899999999999999999999999999984

>PF13023 HD_3: HD domain; PDB: 1XX7_D 2GZ4_B 4DMB_B Back     alignment and domain information
>PRK03826 5'-nucleotidase; Provisional Back     alignment and domain information
>COG1896 Predicted hydrolases of HD superfamily [General function prediction only] Back     alignment and domain information
>PF12917 HD_2: HD containing hydrolase-like enzyme ; PDB: 3MZO_B Back     alignment and domain information
>smart00471 HDc Metal dependent phosphohydrolases with conserved 'HD' motif Back     alignment and domain information
>cd00077 HDc Metal dependent phosphohydrolases with conserved 'HD' motif Back     alignment and domain information
>PRK10119 putative hydrolase; Provisional Back     alignment and domain information
>PRK12705 hypothetical protein; Provisional Back     alignment and domain information
>PF01966 HD: HD domain; InterPro: IPR006674 This domain is found in a superfamily of enzymes with a predicted or known phosphohydrolase activity [] Back     alignment and domain information
>TIGR03401 cyanamide_fam HD domain protein, cyanamide hydratase family Back     alignment and domain information
>TIGR00295 conserved hypothetical protein TIGR00295 Back     alignment and domain information
>PRK12703 tRNA 2'-O-methylase; Reviewed Back     alignment and domain information
>PRK12704 phosphodiesterase; Provisional Back     alignment and domain information
>TIGR03319 YmdA_YtgF conserved hypothetical protein YmdA/YtgF Back     alignment and domain information
>COG1418 Predicted HD superfamily hydrolase [General function prediction only] Back     alignment and domain information
>PRK00106 hypothetical protein; Provisional Back     alignment and domain information
>TIGR00277 HDIG uncharacterized domain HDIG Back     alignment and domain information
>TIGR00488 putative HD superfamily hydrolase of NAD metabolism Back     alignment and domain information
>PRK07152 nadD putative nicotinate-nucleotide adenylyltransferase; Validated Back     alignment and domain information
>PRK13480 3'-5' exoribonuclease YhaM; Provisional Back     alignment and domain information
>COG1713 Predicted HD superfamily hydrolase involved in NAD metabolism [Coenzyme metabolism] Back     alignment and domain information
>COG2206 c-di-GMP phosphodiesterase class II (HD-GYP domain) [Signal transduction mechanisms] Back     alignment and domain information
>PF08668 HDOD: HDOD domain; InterPro: IPR013976 This domain is found in a superfamily of enzymes with a predicted or known phosphohydrolase activity Back     alignment and domain information
>COG4341 Predicted HD phosphohydrolase [General function prediction only] Back     alignment and domain information
>TIGR03760 ICE_TraI_Pfluor integrating conjugative element relaxase, PFL_4751 family Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query210
4dmb_A204 X-Ray Structure Of Human Hepatitus C Virus Ns5a-Tra 2e-21
2cqz_A177 Crystal Structure Of Ph0347 Protein From Pyrococcus 1e-15
1xx7_A184 Conserved Hypothetical Protein From Pyrococcus Furi 5e-14
3kh1_A200 Crystal Structure Of Predicted Metal-Dependent Phos 5e-07
1yoy_A175 Predicted Coding Region Af1432 From Archaeoglobus F 1e-06
1ynb_A173 Crystal Structure Of Genomics Apc5600 Length = 173 1e-06
>pdb|4DMB|A Chain A, X-Ray Structure Of Human Hepatitus C Virus Ns5a-Transactivated Protein 2 At The Resolution 1.9a, Northeast Structural Genomics Consortium (Nesg) Target Hr6723 Length = 204 Back     alignment and structure 
Iteration: 1

 Score = 99.0 bits (245), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 64/130 (49%), Positives = 88/130 (67%), Gaps = 2/130 (1%)
Query: 80  VIDFLSLCHRLKTTKRAGWVKRNVNNPESIADHMYRMGLMGLIMADIPGIDRDKCIKMAI 139
           ++ FL L  +LK   R GWV RNV  PES++DH YR  +   ++ D   +++D+C+++A+
Sbjct: 17  LLQFLRLVGQLKRVPRTGWVYRNVQRPESVSDHXYRXAVXAXVIKD-DRLNKDRCVRLAL 75
Query: 140 VHDIAEAIVGDITPSDGIPKEEKSQREREAITYMCKLLGQGARAKEIDELWMEYEENSTA 199
           VHD AE IVGDI P+D IPKEEK +RE EA   + +LL +  R KE+ ELW EYE  S+A
Sbjct: 76  VHDXAECIVGDIAPADNIPKEEKHRREEEAXKQITQLLPEDLR-KELYELWEEYETQSSA 134
Query: 200 EAKIVKDFDK 209
           EAK VK  D+
Sbjct: 135 EAKFVKQLDQ 144
>pdb|2CQZ|A Chain A, Crystal Structure Of Ph0347 Protein From Pyrococcus Horikoshii Ot3 Length = 177 Back     alignment and structure
>pdb|1XX7|A Chain A, Conserved Hypothetical Protein From Pyrococcus Furiosus Pfu- 403030-001 Length = 184 Back     alignment and structure
>pdb|3KH1|A Chain A, Crystal Structure Of Predicted Metal-Dependent Phosphohydrolase (Zp_00055740.2) From Magnetospirillum Magnetotacticum Ms-1 At 1.37 A Resolution Length = 200 Back     alignment and structure
>pdb|1YOY|A Chain A, Predicted Coding Region Af1432 From Archaeoglobus Fulgidus Length = 175 Back     alignment and structure
>pdb|1YNB|A Chain A, Crystal Structure Of Genomics Apc5600 Length = 173 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query210
3kh1_A200 Predicted metal-dependent phosphohydrolase; struct 2e-47
4dmb_A204 HD domain-containing protein 2; structural genomic 6e-45
1xx7_A184 Oxetanocin-like protein; PSI, secsg, protein struc 5e-40
2cqz_A177 177AA long hypothetical protein; hypothetical prot 1e-39
2paq_A201 5'-deoxynucleotidase YFBR; HD domain phosphoh stru 2e-37
1ynb_A173 Hypothetical protein AF1432; structural genomics, 2e-36
3mzo_A216 LIN2634 protein; HD-domain phosphohydrolase, struc 3e-28
2gz4_A207 Hypothetical protein ATU1052; structural genomics, 5e-04
>3kh1_A Predicted metal-dependent phosphohydrolase; structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.37A {Magnetospirillum magnetotacticum ms-1} Length = 200 Back     alignment and structure
 Score =  153 bits (388), Expect = 2e-47
 Identities = 37/135 (27%), Positives = 66/135 (48%), Gaps = 4/135 (2%)

Query: 78  SSVIDFLSLCHRLKTTKRAGWVKRNVNNPESIADHMYRMGLMGLIMADI--PGIDRDKCI 135
           ++ + F+    +LKT  R   +  + +  E+ A+H + +  M  ++A+     +   +  
Sbjct: 11  AAQMSFVVEIDKLKTILRQTLL-TDSSRRENDAEHSWHIATMAFLLAEYADEAVQIGRVA 69

Query: 136 KMAIVHDIAEAIVGDITPSDGIPKEEKSQREREAITYMCKLLGQGARAKEIDELWMEYEE 195
           +M ++HDI E   GD    D    E+K +RER+A   +  LL    +A E   LW EYE 
Sbjct: 70  RMLLIHDIVEIDAGDTFIHDEAGNEDKEERERKAAARLFGLL-PPDQAAEYSALWQEYEA 128

Query: 196 NSTAEAKIVKDFDKV 210
             TA+A+     D++
Sbjct: 129 RETADARFADALDRL 143
>4dmb_A HD domain-containing protein 2; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium (NESG); HET: MSE GOL; 1.90A {Homo sapiens} Length = 204 Back     alignment and structure
>1xx7_A Oxetanocin-like protein; PSI, secsg, protein structure initiative, southeast collaboratory for structural genomics; 2.26A {Pyrococcus furiosus} SCOP: a.211.1.1 Length = 184 Back     alignment and structure
>2cqz_A 177AA long hypothetical protein; hypothetical proteins, structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; 2.60A {Pyrococcus horikoshii} Length = 177 Back     alignment and structure
>2paq_A 5'-deoxynucleotidase YFBR; HD domain phosphoh structural genomics, PSI, protein structure initiative, MID center for structural genomics, MCSG; 2.10A {Escherichia coli} SCOP: a.211.1.1 PDB: 2par_A* 2pau_A* Length = 201 Back     alignment and structure
>1ynb_A Hypothetical protein AF1432; structural genomics, PSI, protein structure initiative, MIDW center for structural genomics, MCSG; 1.76A {Archaeoglobus fulgidus} SCOP: a.211.1.1 PDB: 1yoy_A Length = 173 Back     alignment and structure
>3mzo_A LIN2634 protein; HD-domain phosphohydrolase, structural genomics, joint cente structural genomics, JCSG, protein structure initiative; HET: MSE; 1.98A {Listeria innocua} Length = 216 Back     alignment and structure
>2gz4_A Hypothetical protein ATU1052; structural genomics, PSI, protein structure initiative; 1.50A {Agrobacterium tumefaciens} SCOP: a.211.1.1 Length = 207 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query210
4dmb_A204 HD domain-containing protein 2; structural genomic 100.0
3kh1_A200 Predicted metal-dependent phosphohydrolase; struct 100.0
1xx7_A184 Oxetanocin-like protein; PSI, secsg, protein struc 100.0
1ynb_A173 Hypothetical protein AF1432; structural genomics, 100.0
2cqz_A177 177AA long hypothetical protein; hypothetical prot 100.0
2paq_A201 5'-deoxynucleotidase YFBR; HD domain phosphoh stru 100.0
3mzo_A216 LIN2634 protein; HD-domain phosphohydrolase, struc 100.0
2gz4_A207 Hypothetical protein ATU1052; structural genomics, 99.93
3b57_A209 LIN1889 protein; Q92AN1, X-RAY, NESG, structural g 97.8
3dto_A223 BH2835 protein; all alpha-helical protein, structu 97.43
2pjq_A 231 Uncharacterized protein LP_2664; LPR71, NESG, stru 97.31
3djb_A223 Hydrolase, HD family; all alpha-helical protein., 97.26
2qgs_A225 Protein Se1688; alpha-helical protein, structural 97.07
3gw7_A 239 Uncharacterized protein YEDJ; all alpha-helical pr 96.96
2pq7_A220 Predicted HD superfamily hydrolase; 104161995, HD 96.74
2hek_A 371 Hypothetical protein; predominantly alpha helical 96.3
2o08_A188 BH1327 protein; putative HD superfamily hydrolase, 95.95
3ccg_A190 HD superfamily hydrolase; NP_347894.1, HD domain, 95.88
2ogi_A196 Hypothetical protein SAG1661; structural genomics, 95.8
3tm8_A328 BD1817, uncharacterized protein; HD-GYP, phosphodi 94.93
3hc1_A305 Uncharacterized HDOD domain protein; HDOD domain p 92.67
3m1t_A275 Putative phosphohydrolase; structural genomics, jo 92.59
3ljx_A288 MMOQ response regulator; structural genomics, PSI- 91.82
2dqb_A 376 Deoxyguanosinetriphosphate triphosphohydrolase, P; 91.42
3i7a_A281 Putative metal-dependent phosphohydrolase; YP_9268 87.74
1vqr_A297 Hypothetical protein CJ0248; HD-domain/pdease-like 85.68
3nr1_A178 HD domain-containing protein 3; stringent response 84.47
2q14_A 410 Phosphohydrolase; BT4208, HD domain, structural ge 84.28
3mem_A457 Putative signal transduction protein; structural g 82.71
>4dmb_A HD domain-containing protein 2; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium (NESG); HET: MSE GOL; 1.90A {Homo sapiens} Back     alignment and structure
Probab=100.00  E-value=4.6e-43  Score=299.06  Aligned_cols=136  Identities=49%  Similarity=0.874  Sum_probs=127.4

Q ss_pred             CCcCcHHHHHHHHHHhHhhcccccCccCCCCCCCCcHHhHHHHHHHHHHHhccCCCCCHHHHHHHHHhhhhhhhhhcCCC
Q 028340           73 FSSSSSSVIDFLSLCHRLKTTKRAGWVKRNVNNPESIADHMYRMGLMGLIMADIPGIDRDKCIKMAIVHDIAEAIVGDIT  152 (210)
Q Consensus        73 ~~~~~~~~l~Fl~~l~rLK~i~R~Gw~~~gv~~~ESVAEHSf~vAliA~~la~~~~vD~~Kvv~mAL~HDLaEa~tGDI~  152 (210)
                      ....++++++|+.++++||+++||||+.+|++++||||||||+||+||+++++. ++|++||++|||+||++|++||||+
T Consensus        10 ~~~~~~~~~~Fl~~~~~LK~i~R~g~~~~gv~~~ESVAEHS~~vAliA~~l~~~-~vD~~r~~~maL~HDl~E~~tGDit   88 (204)
T 4dmb_A           10 SGHGARSLLQFLRLVGQLKRVPRTGWVYRNVQRPESVSDHMYRMAVMAMVIKDD-RLNKDRCVRLALVHDMAECIVGDIA   88 (204)
T ss_dssp             ---CHHHHHHHHHHHHHGGGCBCHHHHHTTCSSCCBHHHHHHHHHHHHHHSCCT-TSCHHHHHHHHHHTTTTHHHHCCCC
T ss_pred             cccCHHHHHHHHHHHHHhccCccCCCcCCCCCCCCcHHHHHHHHHHHHHHHccc-cCCHHHHHHHHHhcchHHhhcCCCc
Confidence            345789999999999999999999999999977899999999999999999975 6999999999999999999999998


Q ss_pred             CCCCCChhHhHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhhCCCHHHHHHhhhccC
Q 028340          153 PSDGIPKEEKSQREREAITYMCKLLGQGARAKEIDELWMEYEENSTAEAKIVKDFDKV  210 (210)
Q Consensus       153 ~~~~v~~~~K~~~E~~A~~~L~~~L~p~~l~~e~~~Lw~EyE~~~T~EAklVK~aDKL  210 (210)
                      |++++.+.+|+++|++|+++++++| |++++++|.+||.|||+++|+||+|||++|||
T Consensus        89 p~k~~~~~~k~~~E~~A~~~l~~~L-P~~~~~e~~~Lw~Eye~~~t~Ea~~vK~aDkl  145 (204)
T 4dmb_A           89 PADNIPKEEKHRREEEAMKQITQLL-PEDLRKELYELWEEYETQSSAEAKFVKQLDQC  145 (204)
T ss_dssp             GGGCCCHHHHHHHHHHHHHHHHTTS-CHHHHHHHHHHHHHHHHTCSHHHHHHHHHHHH
T ss_pred             cccccchhhhHHHHHHHHHHHHHhC-CHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence            8888888999999999999999999 89999999999999999999999999999985
>3kh1_A Predicted metal-dependent phosphohydrolase; structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.37A {Magnetospirillum magnetotacticum ms-1} Back     alignment and structure
>1xx7_A Oxetanocin-like protein; PSI, secsg, protein structure initiative, southeast collaboratory for structural genomics; 2.26A {Pyrococcus furiosus} SCOP: a.211.1.1 Back     alignment and structure
>1ynb_A Hypothetical protein AF1432; structural genomics, PSI, protein structure initiative, MIDW center for structural genomics, MCSG; 1.76A {Archaeoglobus fulgidus} SCOP: a.211.1.1 PDB: 1yoy_A Back     alignment and structure
>2cqz_A 177AA long hypothetical protein; hypothetical proteins, structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; 2.60A {Pyrococcus horikoshii} Back     alignment and structure
>2paq_A 5'-deoxynucleotidase YFBR; HD domain phosphoh structural genomics, PSI, protein structure initiative, MID center for structural genomics, MCSG; 2.10A {Escherichia coli} SCOP: a.211.1.1 PDB: 2par_A* 2pau_A* Back     alignment and structure
>3mzo_A LIN2634 protein; HD-domain phosphohydrolase, structural genomics, joint cente structural genomics, JCSG, protein structure initiative; HET: MSE; 1.98A {Listeria innocua} Back     alignment and structure
>2gz4_A Hypothetical protein ATU1052; structural genomics, PSI, protein structure initiative; 1.50A {Agrobacterium tumefaciens} SCOP: a.211.1.1 Back     alignment and structure
>3b57_A LIN1889 protein; Q92AN1, X-RAY, NESG, structural genomics, PSI-2, protein structure initiative; 3.00A {Listeria innocua CLIP11262} SCOP: a.211.1.1 Back     alignment and structure
>3dto_A BH2835 protein; all alpha-helical protein, structural genomics, PSI-2, protein structure initiative; 3.30A {Bacillus halodurans} SCOP: a.211.1.1 Back     alignment and structure
>2pjq_A Uncharacterized protein LP_2664; LPR71, NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Lactobacillus plantarum WCFS1} SCOP: a.211.1.1 Back     alignment and structure
>3djb_A Hydrolase, HD family; all alpha-helical protein., structural genomics, PSI-2, protein structure initiative; 2.90A {Bacillus thuringiensis serovarkonkukian} SCOP: a.211.1.1 Back     alignment and structure
>2qgs_A Protein Se1688; alpha-helical protein, structural genomics, PSI-2, protein S initiative, northeast structural genomics consortium; 2.00A {Staphylococcus epidermidis} SCOP: a.211.1.1 Back     alignment and structure
>3gw7_A Uncharacterized protein YEDJ; all alpha-helical protein, structural genomics, PSI-2, protein structure initiative; 3.30A {Escherichia coli k-12} Back     alignment and structure
>2pq7_A Predicted HD superfamily hydrolase; 104161995, HD domain, structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.45A {Uncultured thermotogales bacterium} SCOP: a.211.1.1 Back     alignment and structure
>2hek_A Hypothetical protein; predominantly alpha helical protein with GDP binding site AN site being FAR from EACH other, structural genomics, PSI; HET: GDP; 2.00A {Aquifex aeolicus} SCOP: a.211.1.1 Back     alignment and structure
>2o08_A BH1327 protein; putative HD superfamily hydrolase, structural genomics, JOIN for structural genomics, JCSG; HET: UNL PG4 DGI; 1.90A {Bacillus halodurans} Back     alignment and structure
>3ccg_A HD superfamily hydrolase; NP_347894.1, HD domain, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.50A {Clostridium acetobutylicum atcc 824} Back     alignment and structure
>2ogi_A Hypothetical protein SAG1661; structural genomics, joint center for structural genomics, J protein structure initiative; HET: GDP MES; 1.85A {Streptococcus agalactiae serogroup V} Back     alignment and structure
>3tm8_A BD1817, uncharacterized protein; HD-GYP, phosphodiesterase, unknown function, hydrolase,signa protein; 1.28A {Bdellovibrio bacteriovorus} PDB: 3tmb_A 3tmc_A 3tmd_A Back     alignment and structure
>3hc1_A Uncharacterized HDOD domain protein; HDOD domain protein with unknown function, STRU genomics, joint center for structural genomics; 1.90A {Geobacter sulfurreducens} Back     alignment and structure
>3m1t_A Putative phosphohydrolase; structural genomics, joint center structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE GOL; 1.62A {Shewanella amazonensis} SCOP: a.211.1.0 Back     alignment and structure
>3ljx_A MMOQ response regulator; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.30A {Methylococcus capsulatus} PDB: 3ljv_A 3p3q_A Back     alignment and structure
>2dqb_A Deoxyguanosinetriphosphate triphosphohydrolase, P; dntpase, DNTP, single-stranded DNA, DNA dGTPase, HD superfamily, structural genomics; 2.20A {Thermus thermophilus} Back     alignment and structure
>3i7a_A Putative metal-dependent phosphohydrolase; YP_926882.1, STRU genomics, joint center for structural genomics, JCSG; 2.06A {Shewanella amazonensis SB2B} Back     alignment and structure
>1vqr_A Hypothetical protein CJ0248; HD-domain/pdease-like fold, structural genomics, joint cente structural genomics, JCSG; 2.25A {Campylobacter jejuni subsp} SCOP: a.211.1.3 Back     alignment and structure
>3nr1_A HD domain-containing protein 3; stringent response, pyrophosphohydrolase, HD (histidine and acid) family, PPGPP hydrolase, hydrolase; 1.90A {Homo sapiens} Back     alignment and structure
>2q14_A Phosphohydrolase; BT4208, HD domain, structural genomics, JO center for structural genomics, JCSG; HET: MSE ADP; 2.20A {Bacteroides thetaiotaomicron vpi-5482} Back     alignment and structure
>3mem_A Putative signal transduction protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE; 2.25A {Marinobacter aquaeolei} Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 210
d1xx7a_172 a.211.1.1 (A:) Oxetanocin-like protein PF0395 {Pyr 3e-42
d1ynba1167 a.211.1.1 (A:7-173) Hypothetical protein AF1432 {A 5e-42
d2paqa1186 a.211.1.1 (A:2-187) 5'-nucleotidase YfbR {Escheric 2e-37
>d1xx7a_ a.211.1.1 (A:) Oxetanocin-like protein PF0395 {Pyrococcus furiosus [TaxId: 2261]} Length = 172 Back     information, alignment and structure

class: All alpha proteins
fold: HD-domain/PDEase-like
superfamily: HD-domain/PDEase-like
family: HD domain
domain: Oxetanocin-like protein PF0395
species: Pyrococcus furiosus [TaxId: 2261]

 Score =  138 bits (348), Expect = 3e-42
 Identities = 47/135 (34%), Positives = 73/135 (54%), Gaps = 15/135 (11%)

Query: 81  IDFLSLCHRLKTTKRAGWVKRNVNNPESIADHMYRMGLMGLIMADI-----PGIDRDKCI 135
           ID + L  +LK   R GW+ + V NPES+ADH YR+  + L++A+        ID +K +
Sbjct: 2   IDLILLAGKLKRIPRMGWLIKGVPNPESVADHSYRVAFITLLLAEELKKKGVEIDVEKAL 61

Query: 136 KMAIVHDIAEAIVGDITPSDGIPKEEKSQREREAITYMCKLLGQGARAKEIDELWMEYEE 195
           K+AI+HD+ EAI+ D+ P        K + E +A+  +           E  EL+ EY +
Sbjct: 62  KIAIIHDLGEAIITDL-PLSAQKYLNKEEAEAKALKDVL---------PEYTELFEEYSK 111

Query: 196 NSTAEAKIVKDFDKV 210
             T E ++VK  DK+
Sbjct: 112 ALTLEGQLVKIADKL 126
>d1ynba1 a.211.1.1 (A:7-173) Hypothetical protein AF1432 {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} Length = 167 Back     information, alignment and structure
>d2paqa1 a.211.1.1 (A:2-187) 5'-nucleotidase YfbR {Escherichia coli [TaxId: 562]} Length = 186 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query210
d1xx7a_172 Oxetanocin-like protein PF0395 {Pyrococcus furiosu 100.0
d1ynba1167 Hypothetical protein AF1432 {Archaeon Archaeoglobu 100.0
d2paqa1186 5'-nucleotidase YfbR {Escherichia coli [TaxId: 562 100.0
d2gz4a1200 Hypothetical protein Atu1052 {Agrobacterium tumefa 98.82
d3dtoa1212 Uncharacterized protein BH2835 {Bacillus haloduran 97.95
d3b57a1201 Uncharacterized protein Lin1889 {Listeria innocua 97.8
d2pq7a1217 Predicted hydrolase mes0020 {Uncultured thermotoga 97.77
d3djba1213 Uncharacterized protein BT9727_1981 {Bacillus thur 97.69
d2pjqa1215 Uncharacterized protein LP2664 {Lactobacillus plan 97.69
d2qgsa1216 Uncharacterized protein SE1688 {Staphylococcus epi 97.5
d2heka1 369 Hypothetical protein aq_1910 {Aquifex aeolicus [Ta 86.31
>d1xx7a_ a.211.1.1 (A:) Oxetanocin-like protein PF0395 {Pyrococcus furiosus [TaxId: 2261]} Back     information, alignment and structure
class: All alpha proteins
fold: HD-domain/PDEase-like
superfamily: HD-domain/PDEase-like
family: HD domain
domain: Oxetanocin-like protein PF0395
species: Pyrococcus furiosus [TaxId: 2261]

Probab=100.00  E-value=3.4e-38  Score=259.86  Aligned_cols=120  Identities=39%  Similarity=0.621  Sum_probs=106.1

Q ss_pred             HHHHHHHhHhhcccccCccCCCCCCCCcHHhHHHHHHHHHHHhccCC-----CCCHHHHHHHHHhhhhhhhhhcCCCCCC
Q 028340           81 IDFLSLCHRLKTTKRAGWVKRNVNNPESIADHMYRMGLMGLIMADIP-----GIDRDKCIKMAIVHDIAEAIVGDITPSD  155 (210)
Q Consensus        81 l~Fl~~l~rLK~i~R~Gw~~~gv~~~ESVAEHSf~vAliA~~la~~~-----~vD~~Kvv~mAL~HDLaEa~tGDI~~~~  155 (210)
                      ++|+.++++||+++|+||+.+|+++|||||||||+||+||++++...     ++|++|+++|||+||++|+++||||.+.
T Consensus         2 ~~fl~~~~~Lk~~~R~GW~~~gv~~~EsVAeHs~~vA~ia~~la~~~~~~~~~vd~~k~~~maL~HDl~E~~~GDip~~~   81 (172)
T d1xx7a_           2 IDLILLAGKLKRIPRMGWLIKGVPNPESVADHSYRVAFITLLLAEELKKKGVEIDVEKALKIAIIHDLGEAIITDLPLSA   81 (172)
T ss_dssp             HHHHHHHHHTTTSBCHHHHHHTCSSCCBHHHHHHHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHTTTTHHHHCCCCHHH
T ss_pred             hHHHHHHHHHcCCcccccccCCCCCCccHHHHHHHHHHHHHHHHHHHhhcccccCHHHHHHHHHHhhhHHHHcCCCCccc
Confidence            68999999999999999999999999999999999999999998652     6999999999999999999999996544


Q ss_pred             CCChhHhHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhhCCCHHHHHHhhhccC
Q 028340          156 GIPKEEKSQREREAITYMCKLLGQGARAKEIDELWMEYEENSTAEAKIVKDFDKV  210 (210)
Q Consensus       156 ~v~~~~K~~~E~~A~~~L~~~L~p~~l~~e~~~Lw~EyE~~~T~EAklVK~aDKL  210 (210)
                       ..+..|++.|.+++..++    +     ++.++|+|||+++|+||++||++|||
T Consensus        82 -~~~~~~~~~e~~~~~~l~----~-----~~~~l~~eye~~~s~Ea~~vk~~DkL  126 (172)
T d1xx7a_          82 -QKYLNKEEAEAKALKDVL----P-----EYTELFEEYSKALTLEGQLVKIADKL  126 (172)
T ss_dssp             -HTTSCHHHHHHHHHHHHC----G-----GGHHHHHHHHHCCSHHHHHHHHHHHH
T ss_pred             -hhhhhHHHHHHHHHHHhc----c-----hhHHHHHHHHccccHHHHHHHHHHHH
Confidence             234557777877777752    2     47789999999999999999999986
>d1ynba1 a.211.1.1 (A:7-173) Hypothetical protein AF1432 {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} Back     information, alignment and structure
>d2paqa1 a.211.1.1 (A:2-187) 5'-nucleotidase YfbR {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d2gz4a1 a.211.1.1 (A:6-205) Hypothetical protein Atu1052 {Agrobacterium tumefaciens [TaxId: 358]} Back     information, alignment and structure
>d3dtoa1 a.211.1.1 (A:2-213) Uncharacterized protein BH2835 {Bacillus halodurans [TaxId: 86665]} Back     information, alignment and structure
>d3b57a1 a.211.1.1 (A:1-201) Uncharacterized protein Lin1889 {Listeria innocua [TaxId: 1642]} Back     information, alignment and structure
>d2pq7a1 a.211.1.1 (A:1-217) Predicted hydrolase mes0020 {Uncultured thermotogales bacterium [TaxId: 221214]} Back     information, alignment and structure
>d3djba1 a.211.1.1 (A:2-214) Uncharacterized protein BT9727_1981 {Bacillus thuringiensis [TaxId: 1428]} Back     information, alignment and structure
>d2pjqa1 a.211.1.1 (A:1-215) Uncharacterized protein LP2664 {Lactobacillus plantarum [TaxId: 1590]} Back     information, alignment and structure
>d2qgsa1 a.211.1.1 (A:1-216) Uncharacterized protein SE1688 {Staphylococcus epidermidis [TaxId: 1282]} Back     information, alignment and structure
>d2heka1 a.211.1.1 (A:1-369) Hypothetical protein aq_1910 {Aquifex aeolicus [TaxId: 63363]} Back     information, alignment and structure