Citrus Sinensis ID: 028343

---

Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210
Protein Sequence
MYIRPLLMGSGPVLGVAPASEYTFITYASPVGNYHKGLLNLIVEEKFRRAIPGGTGGVKAVTNYAIIYKPIAEAKAKGFTDVLFLNAEKYIEEVSTSNIFLVKGNEISTPPTSGTILPGITRKSIIEITHVLGYQVKERAIPVEELFDAEEVFCTGTAVGVNSVNSITYQDERIEYKRGAGTVGQKLYEMVTGIQTGRIEDKMGWTVELD
Secondary Structure (PSIPRED)
cccccEEEEEcccccccccccEEEEEEEEEccccccccccEEEEEcEEEccccccccccccccccccccHHHHHHHccccEEEEEcccccEEEEcccEEEEEEccEEEcccccccccccccHHHHHHHHHHccccEEEEEEcccccccccEEcccccEEEEcccEEEEEccEEEEEcccccHHHHHHHHHHHcccccccccccccEEEcc
Secondary Structure Prediction (SSPRO)
cccEEEEEEccccccccccccEEEEEEEccccccccccEEEEEEccEEEEcccccccccEHHHHHHHHHHHHHHHHccccEEEEEccccEEEEEcccEEEEEEccEEEEccHHHcccccHHHHHHHHHHHHccccEEEcccEccHHHHccEEEEEEcccEEEEEEEEEEcccEEEEcccccHHHHHHHHHHHcccccccccccccEEEEc
Coil and Loop (DISEMBL)
myirpllmgsgpvlgvapaseytfityaspvgnyhKGLLNLIVEEKfrraipggtggvkAVTNYAIIYKPIAEakakgftdVLFLNAEKYIEEVSTSNIflvkgneistpptsgtilpgitrKSIIEITHVLgyqvkeraipveelfdaeevfctgtavgvnsvnsityqderieykrgagtvgqKLYEMVTGIQtgriedkmgwtveld
Flexible Loop (DISEMBL)
myirpllmgsgpVLGVAPASEYTFITYASPVGNYHKGLLNLIVEEKFRRaipggtggvkaVTNYAIIYKPIAEAKAKGFTDVLFLNAEKYIEEVSTSNIFlvkgneistpptsgtilpgiTRKSIIEITHVLGYQVKERAIPVEELFDAEEVFCtgtavgvnsvnsityqderieykrgagtvgqklyEMVTGiqtgriedkmgwtveld
Low Complexity Region (SEG)
MYIRPLLMGSGPVLGVAPASEYTFITYASPVGNYHKGLLNLIVEEKFRRAIPGGTGGVKAVTNYAIIYKPIAEAKAKGFTDVLFLNAEKYIEEVSTSNIFLVKGNEISTPPTSGTILPGITRKSIIEITHVLGYQVKERAIPVEELFDAEEVFCTGTAVGVNSVNSITYQDERIEYKRGAGTVGQKLYEMVTGIQTGRIEDKMGWTVELD
Disordered region (IsUnstruct)
*****LLMGSGPVLGVAPASEYTFITYASPVGNYHKGLLNLIVEEKFRRAIPGGTGGVKAVTNYAIIYKPIAEAKAKGFTDVLFLNAEKYIEEVSTSNIFLVKGNEISTPPTSGTILPGITRKSIIEITHVLGYQVKERAIPVEELFDAEEVFCTGTAVGVNSVNSITYQDERIEYKRGAGTVGQKLYEMVTGIQTGRIEDKMGWT****
Disordered Region (DISOPRED)
MYIRPLLMGSGPVLGVAPASEYTFITYASPVGNYHKGLLNLIVEEKFRRAIPGGTGGVKAVTNYAIIYKPIAEAKAKGFTDVLFLNAEKYIEEVSTSNIFLVKGNEISTPPTSGTILPGITRKSIIEITHVLGYQVKERAIPVEELFDAEEVFCTGTAVGVNSVNSITYQDERIEYKRGAGTVGQKLYEMVTGIQTGRIEDKMGWTVELD
Disordered Region (DISEMBL)
MYIRPLLMGSGPVLGVAPASEYTFITYASPVGNYHKGLLNLIVEEKFRRAIPGGTGGVKAVTNYAIIYKPIAEAKAKGFTDVLFLNAEKYIEEVSTSNIFLVKGNEISTPPTSGTILPGITRKSIIEITHVLGYQVKERAIPVEELFDAEEVFCTGTAVGVNSVNSITYQDERIEYKRGAGTVGQKLYEMVTGIQTGRIEDKMGWTVELD
Disordered Region (DISPRO)
MYIRPLLMGSGPVLGVAPASEYTFITYASPVGNYHKGLLNLIVEEKFRRAIPGGTGGVKAVTNYAIIYKPIAEAKAKGFTDVLFLNAEKYIEEVSTSNIFLVKGNEISTPPTSGTILPGITRKSIIEITHVLGYQVKERAIPVEELFDAEEVFCTGTAVGVNSVNSITYQDERIEYKRGAGTVGQKLYEMVTGIQTGRIEDKMGWTVELD
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
SSSSSSSSSSSSSSSSSSSooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MYIRPLLMGSGPVLGVAPASEYTFITYASPVGNYHKGLLNLIVEEKFRRAIPGGTGGVKAVTNYAIIYKPIAEAKAKGFTDVLFLNAEKYIEEVSTSNIFLVKGNEISTPPTSGTILPGITRKSIIEITHVLGYQVKERAIPVEELFDAEEVFCTGTAVGVNSVNSITYQDERIEYKRGAGTVGQKLYEMVTGIQTGRIEDKMGWTVELD
Positional Conservation
no confident homologs detected

---

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	210	2.2.26 [Sep-21-2011]
Q9LPM9	356	Branched-chain-amino-acid	yes	no	1.0	0.589	0.588	5e-70
Q9M439	388	Branched-chain-amino-acid	no	no	1.0	0.541	0.595	3e-69
Q9LPM8	367	Putative branched-chain-a	no	no	1.0	0.572	0.588	1e-67
Q9M401	413	Branched-chain-amino-acid	no	no	1.0	0.508	0.578	1e-65
Q9LE06	354	Methionine aminotransfera	no	no	1.0	0.593	0.537	2e-65
Q93Y32	384	Branched-chain-amino-acid	no	no	0.995	0.544	0.602	1e-64
Q9FYA6	415	Branched-chain-amino-acid	no	no	0.995	0.503	0.576	2e-64
P39576	363	Branched-chain-amino-acid	yes	no	0.995	0.575	0.425	4e-40
Q8CQ78	358	Probable branched-chain-a	yes	no	0.995	0.583	0.409	1e-39
Q5HRJ8	358	Probable branched-chain-a	yes	no	0.995	0.583	0.405	2e-39

>sp|Q9LPM9|BCAT6_ARATH Branched-chain-amino-acid aminotransferase 6 OS=Arabidopsis thaliana GN=BCAT6 PE=1 SV=1

 Score =  263 bits (673), Expect = 5e-70,   Method: Compositional matrix adjust.
 Identities = 126/214 (58%), Positives = 166/214 (77%), Gaps = 4/214 (1%)

Query: 1   MYIRPLLMGSGPVLGVAPASEYTFITYASPVGNYHK--GLLNLIVEEKFRRAIPGGTGGV 58
           +YIRPLL+GSG  LGVAPA EYTF+ YASPVG+YHK    LNL V+ K+ RA  GGTGGV
Sbjct: 139 LYIRPLLLGSGATLGVAPAPEYTFLIYASPVGDYHKVSSGLNLKVDHKYHRAHSGGTGGV 198

Query: 59  KAVTNYAIIYKPIAEAKAKGFTDVLFLNAE--KYIEEVSTSNIFLVKGNEISTPPTSGTI 116
           K+ TNY+ + K + EAK+ GF+DVLFL+A   + IEE++  NIF+VKGN +STPPTSGTI
Sbjct: 199 KSCTNYSPVVKSLLEAKSAGFSDVLFLDAATGRNIEELTACNIFIVKGNIVSTPPTSGTI 258

Query: 117 LPGITRKSIIEITHVLGYQVKERAIPVEELFDAEEVFCTGTAVGVNSVNSITYQDERIEY 176
           LPG+TRKSI E+ H +GYQV+ER + V+EL +AEEVFCTGTAV V +V ++T+ D++++Y
Sbjct: 259 LPGVTRKSISELAHDIGYQVEERDVSVDELLEAEEVFCTGTAVVVKAVETVTFHDKKVKY 318

Query: 177 KRGAGTVGQKLYEMVTGIQTGRIEDKMGWTVELD 210
           + G   +  KL+ M+T IQ G +EDK GW V++D
Sbjct: 319 RTGEAALSTKLHSMLTNIQMGVVEDKKGWMVDID 352

Converts 2-oxo acids to branched-chain amino acids. Acts on leucine, isoleucine and valine.
Arabidopsis thaliana (taxid: 3702)
EC: 2EC: .EC: 6EC: .EC: 1EC: .EC: 4EC: 2

>sp|Q9M439|BCAT2_ARATH Branched-chain-amino-acid aminotransferase 2, chloroplastic OS=Arabidopsis thaliana GN=BCAT2 PE=1 SV=1

 Score =  261 bits (667), Expect = 3e-69,   Method: Compositional matrix adjust.
 Identities = 128/215 (59%), Positives = 167/215 (77%), Gaps = 5/215 (2%)

Query: 1   MYIRPLLMGSGPVLGVAPASEYTFITYASPVGNYHK---GLLNLIVEEKFRRAIPGGTGG 57
           +YIRPLLMGSGP+LG+ PA EYTFI YASPVGNY K     LNL VEE++ RA PGG GG
Sbjct: 174 LYIRPLLMGSGPILGLGPAPEYTFIVYASPVGNYFKEGMAALNLYVEEEYVRAAPGGAGG 233

Query: 58  VKAVTNYAIIYKPIAEAKAKGFTDVLFLNA--EKYIEEVSTSNIFLVKGNEISTPPTSGT 115
           VK++TNYA + K ++ AK++GF+DVL+L++  +KY+EE S+ N+F+VKG  ISTP T+GT
Sbjct: 234 VKSITNYAPVLKALSRAKSRGFSDVLYLDSVKKKYLEEASSCNVFVVKGRTISTPATNGT 293

Query: 116 ILPGITRKSIIEITHVLGYQVKERAIPVEELFDAEEVFCTGTAVGVNSVNSITYQDERIE 175
           IL GITRKS++EI    GYQV E+A+ V+E+ DA+EVFCTGTAV V  V +ITYQ++R+E
Sbjct: 294 ILEGITRKSVMEIASDQGYQVVEKAVHVDEVMDADEVFCTGTAVVVAPVGTITYQEKRVE 353

Query: 176 YKRGAGTVGQKLYEMVTGIQTGRIEDKMGWTVELD 210
           YK G  +V QKL  ++ GIQTG IED  GW  +++
Sbjct: 354 YKTGDESVCQKLRSVLVGIQTGLIEDNKGWVTDIN 388

Converts 2-oxo acids to branched-chain amino acids. Acts on leucine, isoleucine and valine.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 6

EC: .

EC: 1

EC: .

EC: 4

EC: 2

>sp|Q9LPM8|BCAT7_ARATH Putative branched-chain-amino-acid aminotransferase 7 OS=Arabidopsis thaliana GN=BCAT7 PE=5 SV=1

 Score =  255 bits (652), Expect = 1e-67,   Method: Compositional matrix adjust.
 Identities = 126/214 (58%), Positives = 163/214 (76%), Gaps = 4/214 (1%)

Query: 1   MYIRPLLMGSGPVLGVAPASEYTFITYASPVGNYHKGL--LNLIVEEKFRRAIPGGTGGV 58
           +YIRPLL+G+G VLGVA A EYTF+ Y SPVGNYHK    LNL V+   RRA  GGTGGV
Sbjct: 142 LYIRPLLIGTGAVLGVASAPEYTFLIYTSPVGNYHKASSGLNLKVDHNHRRAHFGGTGGV 201

Query: 59  KAVTNYAIIYKPIAEAKAKGFTDVLFLNAE--KYIEEVSTSNIFLVKGNEISTPPTSGTI 116
           K+ TNY+ + K + EAK+ GF+DVLFL+A   K IEEVST NIF++KGN +STPPTSGTI
Sbjct: 202 KSCTNYSPVVKSLIEAKSSGFSDVLFLDAATGKNIEEVSTCNIFILKGNIVSTPPTSGTI 261

Query: 117 LPGITRKSIIEITHVLGYQVKERAIPVEELFDAEEVFCTGTAVGVNSVNSITYQDERIEY 176
           LPGITRKSI E+   +GY+V+ER + V+EL +AEEVFCTGTAV + +V ++T+ D+R++Y
Sbjct: 262 LPGITRKSICELARDIGYEVQERDLSVDELLEAEEVFCTGTAVVIKAVETVTFHDKRVKY 321

Query: 177 KRGAGTVGQKLYEMVTGIQTGRIEDKMGWTVELD 210
           + G      KL+ ++T IQ G +EDK GW +E+D
Sbjct: 322 RTGEEAFSTKLHLILTNIQMGVVEDKKGWMMEID 355

Arabidopsis thaliana (taxid: 3702)

>sp|Q9M401|BCAT3_ARATH Branched-chain-amino-acid aminotransferase 3, chloroplastic OS=Arabidopsis thaliana GN=BCAT3 PE=1 SV=1

 Score =  249 bits (635), Expect = 1e-65,   Method: Compositional matrix adjust.
 Identities = 125/216 (57%), Positives = 162/216 (75%), Gaps = 6/216 (2%)

Query: 1   MYIRPLLMGSGPVLGVAPASEYTFITYASPVGNYHK---GLLNLIVEEKFRRAIPGGTGG 57
           +Y+RPLLMG+G VLG+APA EYTFI Y SPVGNY K     +NLIVE +F RA PGGTGG
Sbjct: 198 LYVRPLLMGTGAVLGLAPAPEYTFIIYVSPVGNYFKEGVAPINLIVENEFHRATPGGTGG 257

Query: 58  VKAVTNYAIIYKPIAEAKAKGFTDVLFLNA--EKYIEEVSTSNIFLVKGNEISTPPTSGT 115
           VK + NYA + K  + AKAKG++DVL+L+   ++Y+EEVS+ NIF+VK N ISTP   GT
Sbjct: 258 VKTIGNYAAVLKAQSIAKAKGYSDVLYLDCIYKRYLEEVSSCNIFIVKDNVISTPEIKGT 317

Query: 116 ILPGITRKSIIEITHVLGYQVKERAIPVEELFDAEEVFCTGTAVGVNSVNSITYQDERIE 175
           ILPGITRKS+I++    G+QV+ER + V+EL +A+EVFCTGTAV V+ V S+TY+ +R+ 
Sbjct: 318 ILPGITRKSMIDVARTQGFQVEERNVTVDELLEADEVFCTGTAVVVSPVGSVTYKGKRVS 377

Query: 176 YKRGA-GTVGQKLYEMVTGIQTGRIEDKMGWTVELD 210
           Y  G  GTV ++LY ++T +Q G IED M WTV L 
Sbjct: 378 YGEGTFGTVSKQLYTVLTSLQMGLIEDNMKWTVNLS 413

Converts 2-oxo acids to branched-chain amino acids. Acts on leucine, isoleucine and valine.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 6

EC: .

EC: 1

EC: .

EC: 4

EC: 2

>sp|Q9LE06|BCAT4_ARATH Methionine aminotransferase BCAT4 OS=Arabidopsis thaliana GN=BCAT4 PE=1 SV=1

 Score =  248 bits (634), Expect = 2e-65,   Method: Compositional matrix adjust.
 Identities = 115/214 (53%), Positives = 158/214 (73%), Gaps = 4/214 (1%)

Query: 1   MYIRPLLMGSGPVLGVAPASEYTFITYASPVGNYHKGL--LNLIVEEKFRRAIPGGTGGV 58
           +YIRP+L GSGP+LG  P  E TF  +A PVG YHK    LNL +E++FRRA P GTGGV
Sbjct: 138 LYIRPILFGSGPILGSFPIPETTFTAFACPVGRYHKDNSGLNLKIEDQFRRAFPSGTGGV 197

Query: 59  KAVTNYAIIYKPIAEAKAKGFTDVLFLNAE--KYIEEVSTSNIFLVKGNEISTPPTSGTI 116
           K++TNY  ++ P+AEAK +GF+D+LFL+A   K IEE+  +N+F++KGN +STP  +GTI
Sbjct: 198 KSITNYCPVWIPLAEAKKQGFSDILFLDAATGKNIEELFAANVFMLKGNVVSTPTIAGTI 257

Query: 117 LPGITRKSIIEITHVLGYQVKERAIPVEELFDAEEVFCTGTAVGVNSVNSITYQDERIEY 176
           LPG+TR  ++E+    GYQV+ER IP+ +  DA+E FCTGTA  V S+ S+T++D++  +
Sbjct: 258 LPGVTRNCVMELCRDFGYQVEERTIPLVDFLDADEAFCTGTASIVTSIASVTFKDKKTGF 317

Query: 177 KRGAGTVGQKLYEMVTGIQTGRIEDKMGWTVELD 210
           K G  T+  KLYE ++ IQTGR+ED  GWTVE+D
Sbjct: 318 KTGEETLAAKLYETLSDIQTGRVEDTKGWTVEID 351

May convert 2-oxo acids to branched-chain amino acids.

Arabidopsis thaliana (taxid: 3702)

>sp|Q93Y32|BCAT1_ARATH Branched-chain-amino-acid aminotransferase 1, mitochondrial OS=Arabidopsis thaliana GN=BCAT1 PE=1 SV=2

 Score =  245 bits (626), Expect = 1e-64,   Method: Compositional matrix adjust.
 Identities = 129/214 (60%), Positives = 160/214 (74%), Gaps = 5/214 (2%)

Query: 1   MYIRPLLMGSGPVLGVAPASEYTFITYASPVGNYHK---GLLNLIVEEKFRRAIPGGTGG 57
           +Y+RPLL GSG  LGVA ASEYTF+ + SPV NY K     LNL VEE   RA  GGTGG
Sbjct: 170 LYLRPLLFGSGASLGVAAASEYTFLVFGSPVQNYFKEGTAALNLYVEEVIPRAYLGGTGG 229

Query: 58  VKAVTNYAIIYKPIAEAKAKGFTDVLFLNAE--KYIEEVSTSNIFLVKGNEISTPPTSGT 115
           VKA++NY  + + +  AK++GF+DVL+L+A+  K IEEVS +NIFLVKGN I TP TSGT
Sbjct: 230 VKAISNYGPVLEVMRRAKSRGFSDVLYLDADTGKNIEEVSAANIFLVKGNTIVTPATSGT 289

Query: 116 ILPGITRKSIIEITHVLGYQVKERAIPVEELFDAEEVFCTGTAVGVNSVNSITYQDERIE 175
           IL GITRKSIIEI   LGY+V+ER++PVEEL +AEEVFCTGTA GV SV SIT+++ R E
Sbjct: 290 ILGGITRKSIIEIALDLGYKVEERSVPVEELKEAEEVFCTGTAAGVASVGSITFKNTRTE 349

Query: 176 YKRGAGTVGQKLYEMVTGIQTGRIEDKMGWTVEL 209
           YK G G V Q+L  ++ GIQTG I+D   W +++
Sbjct: 350 YKVGDGIVTQQLRSILVGIQTGSIQDTKDWVLQI 383

Converts 2-oxo acids to branched-chain amino acids. Acts on leucine, isoleucine and valine.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 6

EC: .

EC: 1

EC: .

EC: 4

EC: 2

>sp|Q9FYA6|BCAT5_ARATH Branched-chain-amino-acid aminotransferase 5, chloroplastic OS=Arabidopsis thaliana GN=BCAT5 PE=1 SV=1

 Score =  244 bits (624), Expect = 2e-64,   Method: Compositional matrix adjust.
 Identities = 124/215 (57%), Positives = 161/215 (74%), Gaps = 6/215 (2%)

Query: 1   MYIRPLLMGSGPVLGVAPASEYTFITYASPVGNYHK---GLLNLIVEEKFRRAIPGGTGG 57
           +YIRPLLMG+G VLG+APA EYTF+ + SPVGNY K     +NLIVE +F RA PGGTGG
Sbjct: 200 LYIRPLLMGTGAVLGLAPAPEYTFLIFVSPVGNYFKEGVAPINLIVETEFHRATPGGTGG 259

Query: 58  VKAVTNYAIIYKPIAEAKAKGFTDVLFLNA--EKYIEEVSTSNIFLVKGNEISTPPTSGT 115
           VK + NYA + K  + AKAKG++DVL+L+   ++Y+EEVS+ NIF+VK N ISTP   GT
Sbjct: 260 VKTIGNYAAVLKAQSIAKAKGYSDVLYLDCLHKRYLEEVSSCNIFIVKDNVISTPEIKGT 319

Query: 116 ILPGITRKSIIEITHVLGYQVKERAIPVEELFDAEEVFCTGTAVGVNSVNSITYQDERIE 175
           ILPGITRKSIIE+    G++V+ER + V+EL +A+EVFCTGTAV ++ V SITY+ +R  
Sbjct: 320 ILPGITRKSIIEVARSQGFKVEERNVTVDELVEADEVFCTGTAVVLSPVGSITYKSQRFS 379

Query: 176 Y-KRGAGTVGQKLYEMVTGIQTGRIEDKMGWTVEL 209
           Y + G GTV ++LY  +T +Q G  ED M WTV+L
Sbjct: 380 YGEDGFGTVSKQLYTSLTSLQMGLSEDNMNWTVQL 414

Converts 2-oxo acids to branched-chain amino acids. Acts on leucine, isoleucine and valine.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 6

EC: .

EC: 1

EC: .

EC: 4

EC: 2

>sp|P39576|ILVE2_BACSU Branched-chain-amino-acid aminotransferase 2 OS=Bacillus subtilis (strain 168) GN=ilvK PE=1 SV=5

 Score =  164 bits (415), Expect = 4e-40,   Method: Compositional matrix adjust.
 Identities = 94/221 (42%), Positives = 132/221 (59%), Gaps = 12/221 (5%)

Query: 1   MYIRPLLMGSGPVLGVAPASEYTFITYASPVGNYHK-GL--LNLIVEEKFRRAIPGGTGG 57
           +YIRP ++ + P LGVA +  Y  +   SPVG+Y+K G+  + + VE +F RA+ GGTG 
Sbjct: 136 LYIRPFIIATEPFLGVAASHTYKLLIILSPVGSYYKEGIKPVKIAVESEFVRAVKGGTGN 195

Query: 58  VKAVTNYAIIYKPIAEAKAKGFTDVLFLNA--EKYIEEVSTSNIFLVKGNEISTPPTSGT 115
            K   NYA   K    A+ KGF+ VL+L+   +KYIEEV + NIF     EI TP  +G+
Sbjct: 196 AKTAGNYASSLKAQQVAEEKGFSQVLWLDGIEKKYIEEVGSMNIFFKINGEIVTPMLNGS 255

Query: 116 ILPGITRKSIIEITHVLGYQVKERAIPVEELFDA------EEVFCTGTAVGVNSVNSITY 169
           IL GITR S+I +    G QV ER I ++E+  A      EE F TGTA  ++ V  + +
Sbjct: 256 ILEGITRNSVIALLKHWGLQVSERKIAIDEVIQAHKDGILEEAFGTGTAAVISPVGELIW 315

Query: 170 QDERIEYKRG-AGTVGQKLYEMVTGIQTGRIEDKMGWTVEL 209
           QDE +    G  G + +KLY+ +TGIQ G + D+ GWT E+
Sbjct: 316 QDETLSINNGETGEIAKKLYDTITGIQKGAVADEFGWTTEV 356

Transaminates branched-chain amino acids and ketoglutarate.

Bacillus subtilis (strain 168) (taxid: 224308)

EC: 2

EC: .

EC: 6

EC: .

EC: 1

EC: .

EC: 4

EC: 2

>sp|Q8CQ78|ILVE_STAES Probable branched-chain-amino-acid aminotransferase OS=Staphylococcus epidermidis (strain ATCC 12228) GN=ilvE PE=3 SV=1

 Score =  162 bits (411), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 91/222 (40%), Positives = 133/222 (59%), Gaps = 13/222 (5%)

Query: 1   MYIRPLLMGSGPVLGVAPASEYTFITYASPVGNYHKG----LLNLIVEEKFRRAIPGGTG 56
           +YIRP +  +  VLGV  + +Y  +   SP G Y+ G       + VE+++ RA+ GG G
Sbjct: 134 LYIRPFVFATEGVLGVRSSHQYKLLIILSPSGAYYGGDTLKSTKIYVEDEYVRAVRGGVG 193

Query: 57  GVKAVTNYAIIYKPIAEAKAKGFTDVLFLNA--EKYIEEVSTSNIFLVKGNEISTPPTSG 114
             K   NYA        A   G+  VL+L+   +KY+EEV + NIF V+  ++ TP  +G
Sbjct: 194 FAKVAGNYAASLLAQTNANKLGYDQVLWLDGVEQKYVEEVGSMNIFFVENGKVVTPALNG 253

Query: 115 TILPGITRKSIIEITHVLGYQVKERAIPVEELFDA------EEVFCTGTAVGVNSVNSIT 168
           +ILPGITRKSII++   LGY+V+ER + +EELF+A       EVF +GTA  ++ V ++ 
Sbjct: 254 SILPGITRKSIIQLAEDLGYEVEERRVSIEELFNAYDKGELTEVFGSGTAAVISPVGTLR 313

Query: 169 YQDERIEYKRGA-GTVGQKLYEMVTGIQTGRIEDKMGWTVEL 209
           Y+D  I       G + QKLY+  TGIQ+G++EDK GW VE+
Sbjct: 314 YEDREIVINNNEPGKITQKLYDTYTGIQSGKLEDKYGWRVEV 355

Acts on leucine, isoleucine and valine.

Staphylococcus epidermidis (strain ATCC 12228) (taxid: 176280)

EC: 2

EC: .

EC: 6

EC: .

EC: 1

EC: .

EC: 4

EC: 2

>sp|Q5HRJ8|ILVE_STAEQ Probable branched-chain-amino-acid aminotransferase OS=Staphylococcus epidermidis (strain ATCC 35984 / RP62A) GN=ilvE PE=3 SV=1

 Score =  162 bits (410), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 90/222 (40%), Positives = 133/222 (59%), Gaps = 13/222 (5%)

Query: 1   MYIRPLLMGSGPVLGVAPASEYTFITYASPVGNYHKG----LLNLIVEEKFRRAIPGGTG 56
           +YIRP +  +  +LGV  + +Y  +   SP G Y+ G       + VE+++ RA+ GG G
Sbjct: 134 LYIRPFVFATEGILGVRSSHQYKLLIILSPSGAYYGGDTLKSTKIYVEDEYVRAVRGGVG 193

Query: 57  GVKAVTNYAIIYKPIAEAKAKGFTDVLFLNA--EKYIEEVSTSNIFLVKGNEISTPPTSG 114
             K   NYA        A   G+  VL+L+   +KY+EEV + NIF V+  ++ TP  +G
Sbjct: 194 FAKVAGNYAASLLAQTNANKLGYDQVLWLDGVEQKYVEEVGSMNIFFVENGKVVTPALNG 253

Query: 115 TILPGITRKSIIEITHVLGYQVKERAIPVEELFDA------EEVFCTGTAVGVNSVNSIT 168
           +ILPGITRKSII++   LGY+V+ER + +EELF+A       EVF +GTA  ++ V ++ 
Sbjct: 254 SILPGITRKSIIQLAEDLGYEVEERRVSIEELFNAYDKGELTEVFGSGTAAVISPVGTLR 313

Query: 169 YQDERIEYKRGA-GTVGQKLYEMVTGIQTGRIEDKMGWTVEL 209
           Y+D  I       G + QKLY+  TGIQ+G++EDK GW VE+
Sbjct: 314 YEDREIVINNNEPGKITQKLYDTYTGIQSGKLEDKYGWRVEV 355

Acts on leucine, isoleucine and valine.

Staphylococcus epidermidis (strain ATCC 35984 / RP62A) (taxid: 176279)

EC: 2

EC: .

EC: 6

EC: .

EC: 1

EC: .

EC: 4

EC: 2

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	210
224103809	339	predicted protein [Populus trichocarpa]	1.0	0.619	0.636	6e-75
255562100	328	branched-chain amino acid aminotransfera	1.0	0.640	0.650	1e-74
224063417	318	predicted protein [Populus trichocarpa]	0.995	0.657	0.658	7e-74
255537936	399	branched-chain amino acid aminotransfera	0.995	0.523	0.654	1e-72
288310302	389	branched chain amino acid transaminase [	0.995	0.537	0.654	3e-71
449450320	390	PREDICTED: branched-chain-amino-acid ami	0.995	0.535	0.649	4e-71
302142143	387	unnamed protein product [Vitis vinifera]	1.0	0.542	0.623	3e-69
255689399	329	branched-chain amino acid aminotransfera	0.995	0.635	0.630	6e-69
359492522	379	PREDICTED: branched-chain-amino-acid ami	1.0	0.554	0.626	7e-69
363807226	412	uncharacterized protein LOC100798328 [Gl	0.995	0.507	0.626	7e-69

>gi|224103809|ref|XP_002313202.1| predicted protein [Populus trichocarpa] gi|222849610|gb|EEE87157.1| predicted protein [Populus trichocarpa]

 Score =  285 bits (730), Expect = 6e-75,   Method: Compositional matrix adjust.
 Identities = 135/212 (63%), Positives = 170/212 (80%), Gaps = 2/212 (0%)

Query: 1   MYIRPLLMGSGPVLGVAPASEYTFITYASPVGNYHKGLLNLIVEEKFRRAIPGGTGGVKA 60
           +YIRPLL+G+GP+LGVAP+ EYTF+ YASPVGNY  G ++  VE+K  RAIPGGTGG+K+
Sbjct: 128 LYIRPLLLGTGPILGVAPSPEYTFLAYASPVGNYFNGPMHFSVEDKVYRAIPGGTGGIKS 187

Query: 61  VTNYAIIYKPIAEAKAKGFTDVLFLNAE--KYIEEVSTSNIFLVKGNEISTPPTSGTILP 118
           +TNY+ IYK I +AKAKGFTD +FL+A   K IEE +  NIF+VKGN ISTPP +GTILP
Sbjct: 188 ITNYSPIYKAITQAKAKGFTDAIFLDAATGKNIEEATACNIFVVKGNVISTPPIAGTILP 247

Query: 119 GITRKSIIEITHVLGYQVKERAIPVEELFDAEEVFCTGTAVGVNSVNSITYQDERIEYKR 178
           GITRKSIIE+   LGYQ++ERAIP+EEL + +E FC+GTA+ +  V S+TYQ +R+EYK 
Sbjct: 248 GITRKSIIEVASWLGYQIEERAIPLEELINVDEAFCSGTAIAIKPVGSVTYQGQRVEYKT 307

Query: 179 GAGTVGQKLYEMVTGIQTGRIEDKMGWTVELD 210
           G GTV +KL   +TGIQTG IED MGW VE++
Sbjct: 308 GEGTVSEKLCRTLTGIQTGLIEDTMGWVVEIE 339

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255562100|ref|XP_002522058.1| branched-chain amino acid aminotransferase, putative [Ricinus communis] gi|223538657|gb|EEF40258.1| branched-chain amino acid aminotransferase, putative [Ricinus communis]

 Score =  285 bits (728), Expect = 1e-74,   Method: Compositional matrix adjust.
 Identities = 138/212 (65%), Positives = 170/212 (80%), Gaps = 2/212 (0%)

Query: 1   MYIRPLLMGSGPVLGVAPASEYTFITYASPVGNYHKGLLNLIVEEKFRRAIPGGTGGVKA 60
           +YIRPLLMG+GP+LGV PA EYTF+ YASPVGNY KG L+ +VEE   RAIPGGTGG+KA
Sbjct: 117 LYIRPLLMGTGPILGVGPAPEYTFLLYASPVGNYSKGPLHFLVEENVHRAIPGGTGGIKA 176

Query: 61  VTNYAIIYKPIAEAKAKGFTDVLFLNAE--KYIEEVSTSNIFLVKGNEISTPPTSGTILP 118
           +TNY+ +YK   +AKAKGF+DVLFL+AE  K IEE +  NIF+VKGN I+TP  +GTILP
Sbjct: 177 ITNYSPVYKASTQAKAKGFSDVLFLDAEGGKNIEEGTACNIFVVKGNMIATPAVTGTILP 236

Query: 119 GITRKSIIEITHVLGYQVKERAIPVEELFDAEEVFCTGTAVGVNSVNSITYQDERIEYKR 178
           G+TR+SIIEI     YQ++ER +P+EEL DA+E FCTGTA+ V  V+SITY+ +R+EYK 
Sbjct: 237 GVTRRSIIEIALDFAYQIEERLVPLEELIDADEAFCTGTAMVVKPVSSITYRGKRVEYKI 296

Query: 179 GAGTVGQKLYEMVTGIQTGRIEDKMGWTVELD 210
           G GTV QKL+  +TGIQTGR EDK GWTV +D
Sbjct: 297 GEGTVSQKLHATLTGIQTGRTEDKKGWTVMID 328

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224063417|ref|XP_002301136.1| predicted protein [Populus trichocarpa] gi|222842862|gb|EEE80409.1| predicted protein [Populus trichocarpa]

 Score =  282 bits (721), Expect = 7e-74,   Method: Compositional matrix adjust.
 Identities = 141/214 (65%), Positives = 175/214 (81%), Gaps = 5/214 (2%)

Query: 1   MYIRPLLMGSGPVLGVAPASEYTFITYASPVGNYHK-GL--LNLIVEEKFRRAIPGGTGG 57
           +YIRPLLMGSGP+LG+APA EYTF+ YASPVGNY K GL  LNL VE++F RA  GG GG
Sbjct: 104 LYIRPLLMGSGPILGLAPAPEYTFLIYASPVGNYFKEGLKPLNLYVEDEFHRATRGGAGG 163

Query: 58  VKAVTNYAIIYKPIAEAKAKGFTDVLFLNA--EKYIEEVSTSNIFLVKGNEISTPPTSGT 115
           VK++TNYA + K +A AK++GF+DVL+L++  +K +EEVS+ NIFLVKGN IS+P TSGT
Sbjct: 164 VKSITNYAPVLKAMARAKSRGFSDVLYLDSANKKNLEEVSSCNIFLVKGNIISSPATSGT 223

Query: 116 ILPGITRKSIIEITHVLGYQVKERAIPVEELFDAEEVFCTGTAVGVNSVNSITYQDERIE 175
           ILPG+TR+SIIEI    GYQV+ERAIP++EL DA+EVFCTGTAVGV  V +ITYQD R+E
Sbjct: 224 ILPGVTRRSIIEIALDHGYQVEERAIPLDELMDADEVFCTGTAVGVAPVGTITYQDRRVE 283

Query: 176 YKRGAGTVGQKLYEMVTGIQTGRIEDKMGWTVEL 209
           Y  G  +V QKLY ++ GI+TG IEDK GWT+E+
Sbjct: 284 YNVGEESVSQKLYSILEGIKTGVIEDKKGWTIEI 317

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255537936|ref|XP_002510033.1| branched-chain amino acid aminotransferase, putative [Ricinus communis] gi|223550734|gb|EEF52220.1| branched-chain amino acid aminotransferase, putative [Ricinus communis]

 Score =  278 bits (711), Expect = 1e-72,   Method: Compositional matrix adjust.
 Identities = 140/214 (65%), Positives = 169/214 (78%), Gaps = 5/214 (2%)

Query: 1   MYIRPLLMGSGPVLGVAPASEYTFITYASPVGNYHK---GLLNLIVEEKFRRAIPGGTGG 57
           +YIRPLLMGSGPVLG+APA EYTF+ YASPVGNY K     LNL +EE+F RA  GG GG
Sbjct: 185 LYIRPLLMGSGPVLGLAPAPEYTFLVYASPVGNYFKEGSAPLNLYIEEEFHRASRGGAGG 244

Query: 58  VKAVTNYAIIYKPIAEAKAKGFTDVLFLNA--EKYIEEVSTSNIFLVKGNEISTPPTSGT 115
           VK++TNYA + K IA AK +GF+DVL+L+A  +KY+EEVS+ NIF+VKGN IS+PP +GT
Sbjct: 245 VKSITNYAPVLKAIARAKGRGFSDVLYLDAVNKKYLEEVSSCNIFVVKGNVISSPPANGT 304

Query: 116 ILPGITRKSIIEITHVLGYQVKERAIPVEELFDAEEVFCTGTAVGVNSVNSITYQDERIE 175
           IL G+TR+SIIEI   L YQV+ERAIPV+EL DA+EVFCTGTAVGV  V SITYQD RIE
Sbjct: 305 ILQGVTRRSIIEIACDLNYQVEERAIPVDELMDADEVFCTGTAVGVAPVGSITYQDRRIE 364

Query: 176 YKRGAGTVGQKLYEMVTGIQTGRIEDKMGWTVEL 209
           YK  A +V Q+L   + GI+ G IEDK GW +E+
Sbjct: 365 YKIRAESVSQELQSTLEGIKRGLIEDKKGWILEM 398

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|288310302|gb|ADC45390.1| branched chain amino acid transaminase [Cucumis melo]

 Score =  273 bits (699), Expect = 3e-71,   Method: Compositional matrix adjust.
 Identities = 140/214 (65%), Positives = 168/214 (78%), Gaps = 5/214 (2%)

Query: 1   MYIRPLLMGSGPVLGVAPASEYTFITYASPVGNYHK---GLLNLIVEEKFRRAIPGGTGG 57
           +YIRPLL+G+GPVLG+APA EYTF+ YASPV NY K     LNL VE +F RA  GGTGG
Sbjct: 175 LYIRPLLIGTGPVLGLAPAPEYTFLIYASPVRNYFKEGSAPLNLYVENEFVRASRGGTGG 234

Query: 58  VKAVTNYAIIYKPIAEAKAKGFTDVLFLNA--EKYIEEVSTSNIFLVKGNEISTPPTSGT 115
           VK ++NYA + K I  AK++GF+DVL+L++  ++ +EEVS+ NIFLVKGN ISTP T+GT
Sbjct: 235 VKTISNYAPVLKAITRAKSRGFSDVLYLDSVNKRDLEEVSSCNIFLVKGNVISTPATNGT 294

Query: 116 ILPGITRKSIIEITHVLGYQVKERAIPVEELFDAEEVFCTGTAVGVNSVNSITYQDERIE 175
           ILPG+TRKSIIEI    GY+V+ERAI +EELFDA EVFCTGTAVGV  V SIT  D RIE
Sbjct: 295 ILPGVTRKSIIEIARDRGYEVEERAINMEELFDAHEVFCTGTAVGVAPVGSITCMDRRIE 354

Query: 176 YKRGAGTVGQKLYEMVTGIQTGRIEDKMGWTVEL 209
           Y+ GA T  Q+LY  + GIQTG IEDKMGWTVE+
Sbjct: 355 YQTGADTTCQELYSTLVGIQTGTIEDKMGWTVEI 388

Source: Cucumis melo

Species: Cucumis melo

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449450320|ref|XP_004142911.1| PREDICTED: branched-chain-amino-acid aminotransferase 2, chloroplastic-like [Cucumis sativus] gi|449494398|ref|XP_004159536.1| PREDICTED: branched-chain-amino-acid aminotransferase 2, chloroplastic-like [Cucumis sativus]

 Score =  273 bits (698), Expect = 4e-71,   Method: Compositional matrix adjust.
 Identities = 139/214 (64%), Positives = 168/214 (78%), Gaps = 5/214 (2%)

Query: 1   MYIRPLLMGSGPVLGVAPASEYTFITYASPVGNYHK---GLLNLIVEEKFRRAIPGGTGG 57
           +YIRPLL+G+GPVLG+APA EYTF+ YASPV NY K     LNL VE +F RA  GGTGG
Sbjct: 176 LYIRPLLIGTGPVLGLAPAPEYTFLIYASPVCNYFKEGSAPLNLYVENEFVRASRGGTGG 235

Query: 58  VKAVTNYAIIYKPIAEAKAKGFTDVLFLNA--EKYIEEVSTSNIFLVKGNEISTPPTSGT 115
           VK ++NYA + K I +AK +GF+DVL+L++  ++ +EEVS+ NIFLVKGN ISTP T+GT
Sbjct: 236 VKTISNYAPVLKAITQAKNRGFSDVLYLDSVNKRDLEEVSSCNIFLVKGNVISTPATNGT 295

Query: 116 ILPGITRKSIIEITHVLGYQVKERAIPVEELFDAEEVFCTGTAVGVNSVNSITYQDERIE 175
           ILPG+TRKSIIEI    GY+V+ERA+ +EELFDA EVFCTGTAVGV  V SIT  D RIE
Sbjct: 296 ILPGVTRKSIIEIARDRGYEVEERAVNMEELFDASEVFCTGTAVGVAPVGSITCMDRRIE 355

Query: 176 YKRGAGTVGQKLYEMVTGIQTGRIEDKMGWTVEL 209
           Y+ GA T  Q+LY  + GIQTG IEDKMGWTVE+
Sbjct: 356 YRTGANTTCQELYSTLVGIQTGTIEDKMGWTVEI 389

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|302142143|emb|CBI19346.3| unnamed protein product [Vitis vinifera]

 Score =  266 bits (681), Expect = 3e-69,   Method: Compositional matrix adjust.
 Identities = 134/215 (62%), Positives = 166/215 (77%), Gaps = 5/215 (2%)

Query: 1   MYIRPLLMGSGPVLGVAPASEYTFITYASPVGNYHKGL---LNLIVEEKFRRAIPGGTGG 57
           +YIRPLLMGSGPVLG+ PA E TF+ YASPVGNY K +   LNL +++++ RA  GG GG
Sbjct: 173 LYIRPLLMGSGPVLGLGPAPECTFLIYASPVGNYFKQVSAPLNLFIDDEYHRATRGGAGG 232

Query: 58  VKAVTNYAIIYKPIAEAKAKGFTDVLFLNA--EKYIEEVSTSNIFLVKGNEISTPPTSGT 115
           VKA+TNY+ + K  + AK++GF+DVLFL++  +K IEEVS+ NIF+VK N ISTP T GT
Sbjct: 233 VKAITNYSPVLKAQSRAKSRGFSDVLFLDSVNKKNIEEVSSCNIFIVKDNVISTPATGGT 292

Query: 116 ILPGITRKSIIEITHVLGYQVKERAIPVEELFDAEEVFCTGTAVGVNSVNSITYQDERIE 175
           IL G+TRKSII+I    GYQVKER IPVEE+ +A+EVFCTGTAVGV +V SITYQ +R+E
Sbjct: 293 ILEGVTRKSIIDIALDHGYQVKERCIPVEEVMEADEVFCTGTAVGVAAVGSITYQGKRVE 352

Query: 176 YKRGAGTVGQKLYEMVTGIQTGRIEDKMGWTVELD 210
           YK G   V Q+L  M TGIQ G IEDK GW +E+D
Sbjct: 353 YKSGDRCVSQELLSMYTGIQKGHIEDKKGWILEID 387

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255689399|gb|ACU30051.1| branched-chain amino acid aminotransferase, partial [Glycine max]

 Score =  266 bits (679), Expect = 6e-69,   Method: Compositional matrix adjust.
 Identities = 135/214 (63%), Positives = 166/214 (77%), Gaps = 5/214 (2%)

Query: 1   MYIRPLLMGSGPVLGVAPASEYTFITYASPVGNYHK-GL--LNLIVEEKFRRAIPGGTGG 57
           +YIRPLLMGSGPVLGVAPA EYTF+ Y SPVGNY K GL  +NLIVE +F RA PGGTGG
Sbjct: 115 LYIRPLLMGSGPVLGVAPAPEYTFLIYVSPVGNYFKEGLAPINLIVENEFHRATPGGTGG 174

Query: 58  VKAVTNYAIIYKPIAEAKAKGFTDVLFLNA--EKYIEEVSTSNIFLVKGNEISTPPTSGT 115
           VK + NYA + K  +EAKAKG++DVL+L+   ++Y+EEVS+ NIF+VKGN ISTP   GT
Sbjct: 175 VKTIGNYAAVLKAQSEAKAKGYSDVLYLDCVHKRYLEEVSSCNIFVVKGNVISTPAIKGT 234

Query: 116 ILPGITRKSIIEITHVLGYQVKERAIPVEELFDAEEVFCTGTAVGVNSVNSITYQDERIE 175
           ILPGITRKSII++    G+QV+ER + V+EL DA+EVFCTGTAV V+ V SITY D+R+ 
Sbjct: 235 ILPGITRKSIIDVARSQGFQVEERLVSVDELLDADEVFCTGTAVVVSPVGSITYLDKRVA 294

Query: 176 YKRGAGTVGQKLYEMVTGIQTGRIEDKMGWTVEL 209
           Y  G   V Q+LY ++T +Q G  ED+M WTVEL
Sbjct: 295 YGDGICVVAQQLYTVLTRLQMGLTEDEMNWTVEL 328

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359492522|ref|XP_002285506.2| PREDICTED: branched-chain-amino-acid aminotransferase 2, chloroplastic [Vitis vinifera]

 Score =  265 bits (678), Expect = 7e-69,   Method: Compositional matrix adjust.
 Identities = 134/214 (62%), Positives = 165/214 (77%), Gaps = 4/214 (1%)

Query: 1   MYIRPLLMGSGPVLGVAPASEYTFITYASPVGNYHK--GLLNLIVEEKFRRAIPGGTGGV 58
           +YIRPLLMGSGPVLG+ PA E TF+ YASPVGNY K    LNL +++++ RA  GG GGV
Sbjct: 166 LYIRPLLMGSGPVLGLGPAPECTFLIYASPVGNYFKVSAPLNLFIDDEYHRATRGGAGGV 225

Query: 59  KAVTNYAIIYKPIAEAKAKGFTDVLFLNA--EKYIEEVSTSNIFLVKGNEISTPPTSGTI 116
           KA+TNY+ + K  + AK++GF+DVLFL++  +K IEEVS+ NIF+VK N ISTP T GTI
Sbjct: 226 KAITNYSPVLKAQSRAKSRGFSDVLFLDSVNKKNIEEVSSCNIFIVKDNVISTPATGGTI 285

Query: 117 LPGITRKSIIEITHVLGYQVKERAIPVEELFDAEEVFCTGTAVGVNSVNSITYQDERIEY 176
           L G+TRKSII+I    GYQVKER IPVEE+ +A+EVFCTGTAVGV +V SITYQ +R+EY
Sbjct: 286 LEGVTRKSIIDIALDHGYQVKERCIPVEEVMEADEVFCTGTAVGVAAVGSITYQGKRVEY 345

Query: 177 KRGAGTVGQKLYEMVTGIQTGRIEDKMGWTVELD 210
           K G   V Q+L  M TGIQ G IEDK GW +E+D
Sbjct: 346 KSGDRCVSQELLSMYTGIQKGHIEDKKGWILEID 379

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|363807226|ref|NP_001242355.1| uncharacterized protein LOC100798328 [Glycine max] gi|255635824|gb|ACU18260.1| unknown [Glycine max]

 Score =  265 bits (678), Expect = 7e-69,   Method: Compositional matrix adjust.
 Identities = 134/214 (62%), Positives = 166/214 (77%), Gaps = 5/214 (2%)

Query: 1   MYIRPLLMGSGPVLGVAPASEYTFITYASPVGNYHK-GL--LNLIVEEKFRRAIPGGTGG 57
           +YIRPLLMGSGPVLG+APA EYTF+ Y SPVGNY K GL  +NLIVE +  RA PGGTGG
Sbjct: 198 LYIRPLLMGSGPVLGLAPAPEYTFLIYVSPVGNYFKEGLAPINLIVENELHRATPGGTGG 257

Query: 58  VKAVTNYAIIYKPIAEAKAKGFTDVLFLNA--EKYIEEVSTSNIFLVKGNEISTPPTSGT 115
           VK + NYA + K  +EAKAKG++DVL+L+   ++Y+EEVS+ NIF+VKGN ISTP   GT
Sbjct: 258 VKTIGNYAAVLKAQSEAKAKGYSDVLYLDCVHKRYLEEVSSCNIFVVKGNVISTPAIKGT 317

Query: 116 ILPGITRKSIIEITHVLGYQVKERAIPVEELFDAEEVFCTGTAVGVNSVNSITYQDERIE 175
           ILPGITRKSII++    G+QV+ER + V+EL DA+EVFCTGTAV V+ V SITY D+R+ 
Sbjct: 318 ILPGITRKSIIDVARSQGFQVEERLVSVDELLDADEVFCTGTAVVVSPVGSITYLDKRVA 377

Query: 176 YKRGAGTVGQKLYEMVTGIQTGRIEDKMGWTVEL 209
           Y  G G V Q+LY ++T +Q G  ED+M WTVEL
Sbjct: 378 YGDGIGVVAQQLYTVLTRLQMGLTEDEMNWTVEL 411

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	210
TAIR|locus:2201921	388	BCAT-2 "branched-chain amino a	1.0	0.541	0.6	2.5e-65
TAIR|locus:2031030	356	AT1G50110 [Arabidopsis thalian	1.0	0.589	0.588	4.1e-65
TAIR|locus:2031040	367	BCAT7 "branched-chain amino ac	1.0	0.572	0.588	4.2e-63
TAIR|locus:2097320	413	BCAT3 "branched-chain aminotra	0.995	0.506	0.586	1.1e-62
TAIR|locus:2201931	384	BCAT-1 "branched-chain amino a	0.995	0.544	0.602	1.2e-60
TAIR|locus:2091216	354	BCAT4 "branched-chain aminotra	1.0	0.593	0.537	1.5e-60
TIGR_CMR|GSU_0656	357	GSU_0656 "branched-chain amino	0.980	0.577	0.417	1.5e-37
ASPGD|ASPL0000058845	394	AN0385 [Emericella nidulans (t	0.971	0.517	0.391	4.7e-32
UNIPROTKB|A0R066	368	ilvE "Branched-chain-amino-aci	1.0	0.570	0.349	1e-29
UNIPROTKB|Q10399	368	ilvE "Branched-chain-amino-aci	0.995	0.567	0.364	1.6e-29

TAIR|locus:2201921 BCAT-2 "branched-chain amino acid transaminase 2" [Arabidopsis thaliana (taxid:3702)]

 Score = 665 (239.2 bits), Expect = 2.5e-65, P = 2.5e-65
 Identities = 129/215 (60%), Positives = 169/215 (78%)

Query:     1 MYIRPLLMGSGPVLGVAPASEYTFITYASPVGNYHK-GL--LNLIVEEKFRRAIPGGTGG 57
             +YIRPLLMGSGP+LG+ PA EYTFI YASPVGNY K G+  LNL VEE++ RA PGG GG
Sbjct:   174 LYIRPLLMGSGPILGLGPAPEYTFIVYASPVGNYFKEGMAALNLYVEEEYVRAAPGGAGG 233

Query:    58 VKAVTNYAIIYKPIAEAKAKGFTDVLFLNA--EKYIEEVSTSNIFLVKGNEISTPPTSGT 115
             VK++TNYA + K ++ AK++GF+DVL+L++  +KY+EE S+ N+F+VKG  ISTP T+GT
Sbjct:   234 VKSITNYAPVLKALSRAKSRGFSDVLYLDSVKKKYLEEASSCNVFVVKGRTISTPATNGT 293

Query:   116 ILPGITRKSIIEITHVLGYQVKERAIPVEELFDAEEVFCTGTAVGVNSVNSITYQDERIE 175
             IL GITRKS++EI    GYQV E+A+ V+E+ DA+EVFCTGTAV V  V +ITYQ++R+E
Sbjct:   294 ILEGITRKSVMEIASDQGYQVVEKAVHVDEVMDADEVFCTGTAVVVAPVGTITYQEKRVE 353

Query:   176 YKRGAGTVGQKLYEMVTGIQTGRIEDKMGWTVELD 210
             YK G  +V QKL  ++ GIQTG IED  GW  +++
Sbjct:   354 YKTGDESVCQKLRSVLVGIQTGLIEDNKGWVTDIN 388

GO:0003824 "catalytic activity" evidence=IEA;ISS

GO:0004084 "branched-chain-amino-acid transaminase activity" evidence=IEA;IGI

GO:0005737 "cytoplasm" evidence=ISM

GO:0005739 "mitochondrion" evidence=ISM

GO:0008152 "metabolic process" evidence=IEA

GO:0009081 "branched-chain amino acid metabolic process" evidence=IEA

GO:0009507 "chloroplast" evidence=IDA

GO:0009407 "toxin catabolic process" evidence=RCA

GO:0009744 "response to sucrose stimulus" evidence=RCA

GO:0009750 "response to fructose stimulus" evidence=RCA

TAIR|locus:2031030 AT1G50110 [Arabidopsis thaliana (taxid:3702)]

 Score = 663 (238.4 bits), Expect = 4.1e-65, P = 4.1e-65
 Identities = 126/214 (58%), Positives = 166/214 (77%)

Query:     1 MYIRPLLMGSGPVLGVAPASEYTFITYASPVGNYHK--GLLNLIVEEKFRRAIPGGTGGV 58
             +YIRPLL+GSG  LGVAPA EYTF+ YASPVG+YHK    LNL V+ K+ RA  GGTGGV
Sbjct:   139 LYIRPLLLGSGATLGVAPAPEYTFLIYASPVGDYHKVSSGLNLKVDHKYHRAHSGGTGGV 198

Query:    59 KAVTNYAIIYKPIAEAKAKGFTDVLFLNAE--KYIEEVSTSNIFLVKGNEISTPPTSGTI 116
             K+ TNY+ + K + EAK+ GF+DVLFL+A   + IEE++  NIF+VKGN +STPPTSGTI
Sbjct:   199 KSCTNYSPVVKSLLEAKSAGFSDVLFLDAATGRNIEELTACNIFIVKGNIVSTPPTSGTI 258

Query:   117 LPGITRKSIIEITHVLGYQVKERAIPVEELFDAEEVFCTGTAVGVNSVNSITYQDERIEY 176
             LPG+TRKSI E+ H +GYQV+ER + V+EL +AEEVFCTGTAV V +V ++T+ D++++Y
Sbjct:   259 LPGVTRKSISELAHDIGYQVEERDVSVDELLEAEEVFCTGTAVVVKAVETVTFHDKKVKY 318

Query:   177 KRGAGTVGQKLYEMVTGIQTGRIEDKMGWTVELD 210
             + G   +  KL+ M+T IQ G +EDK GW V++D
Sbjct:   319 RTGEAALSTKLHSMLTNIQMGVVEDKKGWMVDID 352

GO:0003824 "catalytic activity" evidence=IEA;ISS

GO:0004084 "branched-chain-amino-acid transaminase activity" evidence=IEA

GO:0005737 "cytoplasm" evidence=ISM

GO:0008152 "metabolic process" evidence=IEA

GO:0009081 "branched-chain amino acid metabolic process" evidence=IEA

GO:0006084 "acetyl-CoA metabolic process" evidence=RCA

GO:0009407 "toxin catabolic process" evidence=RCA

TAIR|locus:2031040 BCAT7 "branched-chain amino acid transaminase 7" [Arabidopsis thaliana (taxid:3702)]

 Score = 644 (231.8 bits), Expect = 4.2e-63, P = 4.2e-63
 Identities = 126/214 (58%), Positives = 163/214 (76%)

Query:     1 MYIRPLLMGSGPVLGVAPASEYTFITYASPVGNYHKGL--LNLIVEEKFRRAIPGGTGGV 58
             +YIRPLL+G+G VLGVA A EYTF+ Y SPVGNYHK    LNL V+   RRA  GGTGGV
Sbjct:   142 LYIRPLLIGTGAVLGVASAPEYTFLIYTSPVGNYHKASSGLNLKVDHNHRRAHFGGTGGV 201

Query:    59 KAVTNYAIIYKPIAEAKAKGFTDVLFLNAE--KYIEEVSTSNIFLVKGNEISTPPTSGTI 116
             K+ TNY+ + K + EAK+ GF+DVLFL+A   K IEEVST NIF++KGN +STPPTSGTI
Sbjct:   202 KSCTNYSPVVKSLIEAKSSGFSDVLFLDAATGKNIEEVSTCNIFILKGNIVSTPPTSGTI 261

Query:   117 LPGITRKSIIEITHVLGYQVKERAIPVEELFDAEEVFCTGTAVGVNSVNSITYQDERIEY 176
             LPGITRKSI E+   +GY+V+ER + V+EL +AEEVFCTGTAV + +V ++T+ D+R++Y
Sbjct:   262 LPGITRKSICELARDIGYEVQERDLSVDELLEAEEVFCTGTAVVIKAVETVTFHDKRVKY 321

Query:   177 KRGAGTVGQKLYEMVTGIQTGRIEDKMGWTVELD 210
             + G      KL+ ++T IQ G +EDK GW +E+D
Sbjct:   322 RTGEEAFSTKLHLILTNIQMGVVEDKKGWMMEID 355

GO:0003824 "catalytic activity" evidence=IEA;ISS

GO:0004084 "branched-chain-amino-acid transaminase activity" evidence=IEA

GO:0005737 "cytoplasm" evidence=ISM

GO:0008152 "metabolic process" evidence=IEA

GO:0009081 "branched-chain amino acid metabolic process" evidence=IEA

GO:0009407 "toxin catabolic process" evidence=RCA

TAIR|locus:2097320 BCAT3 "branched-chain aminotransferase 3" [Arabidopsis thaliana (taxid:3702)]

 Score = 640 (230.4 bits), Expect = 1.1e-62, P = 1.1e-62
 Identities = 126/215 (58%), Positives = 164/215 (76%)

Query:     1 MYIRPLLMGSGPVLGVAPASEYTFITYASPVGNYHK-GL--LNLIVEEKFRRAIPGGTGG 57
             +Y+RPLLMG+G VLG+APA EYTFI Y SPVGNY K G+  +NLIVE +F RA PGGTGG
Sbjct:   198 LYVRPLLMGTGAVLGLAPAPEYTFIIYVSPVGNYFKEGVAPINLIVENEFHRATPGGTGG 257

Query:    58 VKAVTNYAIIYKPIAEAKAKGFTDVLFLNA--EKYIEEVSTSNIFLVKGNEISTPPTSGT 115
             VK + NYA + K  + AKAKG++DVL+L+   ++Y+EEVS+ NIF+VK N ISTP   GT
Sbjct:   258 VKTIGNYAAVLKAQSIAKAKGYSDVLYLDCIYKRYLEEVSSCNIFIVKDNVISTPEIKGT 317

Query:   116 ILPGITRKSIIEITHVLGYQVKERAIPVEELFDAEEVFCTGTAVGVNSVNSITYQDERIE 175
             ILPGITRKS+I++    G+QV+ER + V+EL +A+EVFCTGTAV V+ V S+TY+ +R+ 
Sbjct:   318 ILPGITRKSMIDVARTQGFQVEERNVTVDELLEADEVFCTGTAVVVSPVGSVTYKGKRVS 377

Query:   176 YKRGA-GTVGQKLYEMVTGIQTGRIEDKMGWTVEL 209
             Y  G  GTV ++LY ++T +Q G IED M WTV L
Sbjct:   378 YGEGTFGTVSKQLYTVLTSLQMGLIEDNMKWTVNL 412

GO:0003824 "catalytic activity" evidence=IEA;ISS

GO:0004084 "branched-chain-amino-acid transaminase activity" evidence=IEA;IGI

GO:0008152 "metabolic process" evidence=IEA

GO:0009081 "branched-chain amino acid metabolic process" evidence=IEA

GO:0009507 "chloroplast" evidence=ISM;IDA

GO:0009570 "chloroplast stroma" evidence=IDA

GO:0005829 "cytosol" evidence=RCA

GO:0009407 "toxin catabolic process" evidence=RCA

GO:0019932 "second-messenger-mediated signaling" evidence=RCA

TAIR|locus:2201931 BCAT-1 "branched-chain amino acid transaminase 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 621 (223.7 bits), Expect = 1.2e-60, P = 1.2e-60
 Identities = 129/214 (60%), Positives = 160/214 (74%)

Query:     1 MYIRPLLMGSGPVLGVAPASEYTFITYASPVGNYHK---GLLNLIVEEKFRRAIPGGTGG 57
             +Y+RPLL GSG  LGVA ASEYTF+ + SPV NY K     LNL VEE   RA  GGTGG
Sbjct:   170 LYLRPLLFGSGASLGVAAASEYTFLVFGSPVQNYFKEGTAALNLYVEEVIPRAYLGGTGG 229

Query:    58 VKAVTNYAIIYKPIAEAKAKGFTDVLFLNAE--KYIEEVSTSNIFLVKGNEISTPPTSGT 115
             VKA++NY  + + +  AK++GF+DVL+L+A+  K IEEVS +NIFLVKGN I TP TSGT
Sbjct:   230 VKAISNYGPVLEVMRRAKSRGFSDVLYLDADTGKNIEEVSAANIFLVKGNTIVTPATSGT 289

Query:   116 ILPGITRKSIIEITHVLGYQVKERAIPVEELFDAEEVFCTGTAVGVNSVNSITYQDERIE 175
             IL GITRKSIIEI   LGY+V+ER++PVEEL +AEEVFCTGTA GV SV SIT+++ R E
Sbjct:   290 ILGGITRKSIIEIALDLGYKVEERSVPVEELKEAEEVFCTGTAAGVASVGSITFKNTRTE 349

Query:   176 YKRGAGTVGQKLYEMVTGIQTGRIEDKMGWTVEL 209
             YK G G V Q+L  ++ GIQTG I+D   W +++
Sbjct:   350 YKVGDGIVTQQLRSILVGIQTGSIQDTKDWVLQI 383

GO:0003824 "catalytic activity" evidence=IEA;ISS

GO:0004084 "branched-chain-amino-acid transaminase activity" evidence=IEA;IGI;IDA

GO:0005737 "cytoplasm" evidence=ISM

GO:0005739 "mitochondrion" evidence=ISM;IDA

GO:0008152 "metabolic process" evidence=IEA

GO:0009081 "branched-chain amino acid metabolic process" evidence=IEA

GO:0005515 "protein binding" evidence=IPI

GO:0009407 "toxin catabolic process" evidence=RCA

TAIR|locus:2091216 BCAT4 "branched-chain aminotransferase4" [Arabidopsis thaliana (taxid:3702)]

 Score = 620 (223.3 bits), Expect = 1.5e-60, P = 1.5e-60
 Identities = 115/214 (53%), Positives = 158/214 (73%)

Query:     1 MYIRPLLMGSGPVLGVAPASEYTFITYASPVGNYHKGL--LNLIVEEKFRRAIPGGTGGV 58
             +YIRP+L GSGP+LG  P  E TF  +A PVG YHK    LNL +E++FRRA P GTGGV
Sbjct:   138 LYIRPILFGSGPILGSFPIPETTFTAFACPVGRYHKDNSGLNLKIEDQFRRAFPSGTGGV 197

Query:    59 KAVTNYAIIYKPIAEAKAKGFTDVLFLNAE--KYIEEVSTSNIFLVKGNEISTPPTSGTI 116
             K++TNY  ++ P+AEAK +GF+D+LFL+A   K IEE+  +N+F++KGN +STP  +GTI
Sbjct:   198 KSITNYCPVWIPLAEAKKQGFSDILFLDAATGKNIEELFAANVFMLKGNVVSTPTIAGTI 257

Query:   117 LPGITRKSIIEITHVLGYQVKERAIPVEELFDAEEVFCTGTAVGVNSVNSITYQDERIEY 176
             LPG+TR  ++E+    GYQV+ER IP+ +  DA+E FCTGTA  V S+ S+T++D++  +
Sbjct:   258 LPGVTRNCVMELCRDFGYQVEERTIPLVDFLDADEAFCTGTASIVTSIASVTFKDKKTGF 317

Query:   177 KRGAGTVGQKLYEMVTGIQTGRIEDKMGWTVELD 210
             K G  T+  KLYE ++ IQTGR+ED  GWTVE+D
Sbjct:   318 KTGEETLAAKLYETLSDIQTGRVEDTKGWTVEID 351

GO:0003824 "catalytic activity" evidence=IEA;ISS

GO:0004084 "branched-chain-amino-acid transaminase activity" evidence=IEA

GO:0005737 "cytoplasm" evidence=ISM

GO:0005829 "cytosol" evidence=IDA

GO:0009416 "response to light stimulus" evidence=IEP

GO:0009611 "response to wounding" evidence=IEP

GO:0010326 "methionine-oxo-acid transaminase activity" evidence=IDA

GO:0019761 "glucosinolate biosynthetic process" evidence=RCA;IMP

GO:0009407 "toxin catabolic process" evidence=RCA

GO:0009684 "indoleacetic acid biosynthetic process" evidence=RCA

GO:0019344 "cysteine biosynthetic process" evidence=RCA

TIGR_CMR|GSU_0656 GSU_0656 "branched-chain amino acid aminotransferase" [Geobacter sulfurreducens PCA (taxid:243231)]

 Score = 403 (146.9 bits), Expect = 1.5e-37, P = 1.5e-37
 Identities = 91/218 (41%), Positives = 125/218 (57%)

Query:     1 MYIRPLLMGSGPVLGVAPASEYTFITYASPVGNYHKGLLN---LIVEEKFRRAIPGGTGG 57
             +YIRP ++   P LGV PA  Y F    SPVG Y+    N   ++VE+++ RA+PGGTG 
Sbjct:   136 LYIRPAMIAVEPALGVKPADHYYFFVILSPVGAYYASGFNPVKIMVEDQYVRAVPGGTGE 195

Query:    58 VKAVTNYAIIYKPIAEAKAKGFTDVLFLNA--EKYIEEVSTSNIFLVKGNEISTPPTSGT 115
              K   NYA   +   EAK KGF  VL+L+    +YIEEV   N+    G  I T P +GT
Sbjct:   196 AKTGGNYASSLRAGLEAKKKGFDQVLWLDGVHRRYIEEVGAMNMLFAYGKTIVTSPLTGT 255

Query:   116 ILPGITRKSIIEITHVLGYQVKERAIPVEELF-DAE-----EVFCTGTAVGVNSVNSITY 169
             IL G+TR S++++    GY ++ER I V +L  D       E F +GTA  V+ V  + Y
Sbjct:   256 ILNGVTRDSVLKLAASRGYTIEERLIDVNDLMADIRAGKVTEAFGSGTAAVVSPVGILAY 315

Query:   170 QDERIEY-KRGAGTVGQKLYEMVTGIQTGRIEDKMGWT 206
             + E +     G G + ++LY+ +TGIQTGRI D  GWT
Sbjct:   316 KGESVTVGDGGVGPITRELYDTLTGIQTGRIPDTFGWT 353

GO:0004084 "branched-chain-amino-acid transaminase activity" evidence=ISS

GO:0009082 "branched-chain amino acid biosynthetic process" evidence=ISS

ASPGD|ASPL0000058845 AN0385 [Emericella nidulans (taxid:162425)]

 Score = 351 (128.6 bits), Expect = 4.7e-32, P = 4.7e-32
 Identities = 87/222 (39%), Positives = 123/222 (55%)

Query:     1 MYIRPLLMGSGPVLGVAPASEYTFITYASPVGNYHKGL--LNLIVEEKFRRAIPGGTGGV 58
             MYIRPL+ GS   LG++P  EYTF+ +  P G YH G+  ++ ++ E F RA P GTG  
Sbjct:   135 MYIRPLIFGSSAQLGLSPPEEYTFVVFVMPTGVYH-GVHAVDALILEDFDRAAPEGTGSA 193

Query:    59 KAVTNYAIIYKPIAEAKAKGFTDVLFLNAE--KYIEEVSTSNIFLVKGNEIS-----TPP 111
             K   NYA + +  A+A A+GF   L L++     I+E STS +  VK N+ S       P
Sbjct:   194 KVGGNYAPVLRHSAKAHAEGFGITLHLDSRTRSEIDEFSTSGMIAVKKNKESGKVTLVQP 253

Query:   112 TSGTILPGITRKSIIEITHV-LGYQVKERAIPVEELFDAEEVFCTGTAVGVNSVNSITYQ 170
              S  ++  +T  S+ EI  +  GY V++R IP EEL + +EV   GTA  +  + SIT +
Sbjct:   254 DSPNVIDSVTAASVCEIGKLWFGYDVEKRRIPYEELNEFDEVMAAGTAAALVPIRSITRR 313

Query:   171 DE--RIEYK-----RGAGTVGQKLYEMVTGIQTGRIEDKMGW 205
                 R EY+      G G V  KL   + GIQ G+IE+ +GW
Sbjct:   314 SSGNRFEYECGGEEAGGGEVCVKLLRTLKGIQLGKIEETLGW 355

GO:0004084 "branched-chain-amino-acid transaminase activity" evidence=ISA

GO:0009082 "branched-chain amino acid biosynthetic process" evidence=ISA

GO:0005575 "cellular_component" evidence=ND

UNIPROTKB|A0R066 ilvE "Branched-chain-amino-acid aminotransferase" [Mycobacterium smegmatis str. MC2 155 (taxid:246196)]

 Score = 329 (120.9 bits), Expect = 1.0e-29, P = 1.0e-29
 Identities = 79/226 (34%), Positives = 121/226 (53%)

Query:     1 MYIRPLLMGSGPVLGVAPASEYTFITYASPVGNYHKGLLNLI---VEEKFRRAIPGGTGG 57
             +Y+RP ++ + P LGV P++EY ++  ASP G Y KG +  +   +  ++ RA PGGTG 
Sbjct:   143 LYLRPFVIATEPGLGVRPSNEYRYLLIASPAGAYFKGGIKPVSVWLSHEYVRASPGGTGA 202

Query:    58 VKAVTNYAIIYKPIAEAKAKGFTDVLFLNA--EKYIEEVSTSNIFLVKGN----EISTPP 111
              K   NYA      A+A   G   V++L+A   +Y+EE+   N+F V G+     + TP 
Sbjct:   203 AKFGGNYAASLLAQAQAAEMGCDQVVWLDAIERRYVEEMGGMNLFFVFGSGGSARLVTPE 262

Query:   112 TSGTILPGITRKSIIEITHVLGYQVKERAIPVEE------LFDAEEVFCTGTAVGVNSVN 165
              SG++LPGITR S++++    G+ V+ER I V+E        +  EVF  GTA  +  V+
Sbjct:   263 LSGSLLPGITRDSLLQLATDAGFAVEERKIDVDEWQKKAGAGEITEVFACGTAAVITPVS 322

Query:   166 SITYQDERIEYKRGA-GTVGQKLYEMVTGIQTGRIEDKMGWTVELD 210
              + + D       G  G +   L + +TGIQ G   D  GW   L+
Sbjct:   323 HVKHHDGEFTIADGQPGEITMALRDTLTGIQRGTFADTHGWMARLN 368

GO:0004084 "branched-chain-amino-acid transaminase activity" evidence=IDA

GO:0009081 "branched-chain amino acid metabolic process" evidence=IDA

GO:0018272 "protein-pyridoxal-5-phosphate linkage via peptidyl-N6-pyridoxal phosphate-L-lysine" evidence=IDA

GO:0030170 "pyridoxal phosphate binding" evidence=IDA

UNIPROTKB|Q10399 ilvE "Branched-chain-amino-acid aminotransferase" [Mycobacterium tuberculosis (taxid:1773)]

 Score = 327 (120.2 bits), Expect = 1.6e-29, P = 1.6e-29
 Identities = 82/225 (36%), Positives = 118/225 (52%)

Query:     1 MYIRPLLMGSGPVLGVAPASEYTFITYASPVGNYHKGLL---NLIVEEKFRRAIPGGTGG 57
             +Y+RP +  + P LGV PA++Y ++  ASP G Y KG +   ++ V  ++ RA PGGTG 
Sbjct:   143 LYLRPFIFATEPGLGVRPATQYRYLLIASPAGAYFKGGIAPVSVWVSTEYVRACPGGTGA 202

Query:    58 VKAVTNYAIIYKPIAEAKAKGFTDVLFLNA--EKYIEEVSTSNIFLVKGN----EISTPP 111
              K   NYA      AEA   G   V++L+A   +YIEE+   NIF V G+     + TP 
Sbjct:   203 AKFGGNYAASLLAQAEAAENGCDQVVWLDAVERRYIEEMGGMNIFFVLGSGGSARLVTPE 262

Query:   112 TSGTILPGITRKSIIEITHVLGYQVKERAIPVEE------LFDAEEVFCTGTAVGVNSVN 165
              SG++LPGITR S++++    G+ V+ER I ++E        +  EVF  GTA  +  V 
Sbjct:   263 LSGSLLPGITRDSLLQLAIDAGFAVEERRIDIDEWQKKAAAGEITEVFACGTAAVITPVA 322

Query:   166 SITYQDERIEYKRGA-GTVGQKLYEMVTGIQTGRIEDKMGWTVEL 209
              + +         G  G V   L + +TGIQ G   D  GW   L
Sbjct:   323 RVRHGASEFRIADGQPGEVTMALRDTLTGIQRGTFADTHGWMARL 367

GO:0004084 "branched-chain-amino-acid transaminase activity" evidence=IDA

GO:0009081 "branched-chain amino acid metabolic process" evidence=IDA

GO:0009082 "branched-chain amino acid biosynthetic process" evidence=IDA

GO:0018272 "protein-pyridoxal-5-phosphate linkage via peptidyl-N6-pyridoxal phosphate-L-lysine" evidence=IDA

GO:0030170 "pyridoxal phosphate binding" evidence=IDA

GO:0040007 "growth" evidence=IMP

GO:0042803 "protein homodimerization activity" evidence=IPI

GO:0071267 "L-methionine salvage" evidence=IDA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
3rd Layer	2.6.1	LOW CONFIDENCE prediction!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	fgenesh4_pm.C_LG_IX000386	hypothetical protein (339 aa)
		(Populus trichocarpa)
Predicted Functional Partners:
	gw1.V.3049.1	2-isopropylmalate synthase (EC-2.3.3.13) (545 aa)	•					•	•		0.967
	estExt_fgenesh4_pm.C_LG_III0598	hypothetical protein (605 aa)	•			•		•	•		0.955
	estExt_fgenesh4_pg.C_LG_I0451	hypothetical protein (611 aa)	•			•		•	•		0.955
	gw1.XI.1444.1	aminoacyl-tRNA ligase (EC-6.1.1.4) (889 aa)						•	•		0.926
	fgenesh4_pg.C_LG_II002297	aminoacyl-tRNA ligase (EC-6.1.1.9) (951 aa)						•	•		0.914
	estExt_fgenesh4_pg.C_LG_VII1280	SubName- Full=Putative uncharacterized protein; (1054 aa)						•	•		0.904
	gw1.X.4012.1	isoleucyl-tRNA synthetase (1029 aa)						•	•		0.904
	eugene3.00050267	aminoacyl-tRNA ligase (EC-6.1.1.9) (1046 aa)						•	•		0.904
	gw1.III.165.1	hypothetical protein (320 aa)						•			0.902
	eugene3.00860050	aminoacyl-tRNA ligase (EC-6.1.1.4) (1087 aa)						•	•		0.900

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	210
PLN03117	355	PLN03117, PLN03117, Branched-chain-amino-acid amin	1e-102
PLN02782	403	PLN02782, PLN02782, Branched-chain amino acid amin	5e-98
PLN02259	388	PLN02259, PLN02259, branched-chain-amino-acid amin	4e-84
PRK13357	356	PRK13357, PRK13357, branched-chain amino acid amin	1e-82
PLN02883	384	PLN02883, PLN02883, Branched-chain amino acid amin	7e-79
cd01557	279	cd01557, BCAT_beta_family, BCAT_beta_family: Branc	2e-76
TIGR01123	313	TIGR01123, ilvE_II, branched-chain amino acid amin	1e-60
cd00449	256	cd00449, PLPDE_IV, PyridoxaL 5'-Phosphate Dependen	6e-59
COG0115	284	COG0115, IlvE, Branched-chain amino acid aminotran	1e-52
PRK06606	306	PRK06606, PRK06606, branched-chain amino acid amin	9e-38
pfam01063	231	pfam01063, Aminotran_4, Aminotransferase class IV	2e-36
TIGR01122	298	TIGR01122, ilvE_I, branched-chain amino acid amino	1e-35
cd01558	270	cd01558, D-AAT_like, D-Alanine aminotransferase (D	8e-27
PRK08320	288	PRK08320, PRK08320, branched-chain amino acid amin	2e-22
cd01559	249	cd01559, ADCL_like, ADCL_like: 4-Amino-4-deoxychor	3e-22
PRK13356	286	PRK13356, PRK13356, aminotransferase; Provisional	1e-21
PRK07544	292	PRK07544, PRK07544, branched-chain amino acid amin	3e-21
PRK07849	292	PRK07849, PRK07849, 4-amino-4-deoxychorismate lyas	6e-16
PRK07650	283	PRK07650, PRK07650, 4-amino-4-deoxychorismate lyas	1e-14
PRK12479	299	PRK12479, PRK12479, branched-chain amino acid amin	1e-14
TIGR03461	261	TIGR03461, pabC_Proteo, aminodeoxychorismate lyase	3e-14
PRK06092	268	PRK06092, PRK06092, 4-amino-4-deoxychorismate lyas	7e-14
PRK06680	286	PRK06680, PRK06680, D-amino acid aminotransferase;	5e-11
TIGR01121	276	TIGR01121, D_amino_aminoT, D-amino acid aminotrans	5e-10
PRK12400	290	PRK12400, PRK12400, D-amino acid aminotransferase;	8e-08
PLN02845	336	PLN02845, PLN02845, Branched-chain-amino-acid amin	1e-07
PRK07546	209	PRK07546, PRK07546, hypothetical protein; Provisio	2e-06
PRK09266	266	PRK09266, PRK09266, hypothetical protein; Provisio	6e-05

>gnl|CDD|178664 PLN03117, PLN03117, Branched-chain-amino-acid aminotransferase; Provisional

 Score =  299 bits (766), Expect = e-102
 Identities = 129/214 (60%), Positives = 166/214 (77%), Gaps = 4/214 (1%)

Query: 1   MYIRPLLMGSGPVLGVAPASEYTFITYASPVGNYHKGL--LNLIVEEKFRRAIPGGTGGV 58
           +YIRPLL+GSG VLGVAPA EYTF+ YASPVGNYHK    LNL V+ K RRA  GGTGGV
Sbjct: 138 LYIRPLLIGSGAVLGVAPAPEYTFLIYASPVGNYHKASSGLNLKVDHKHRRAHSGGTGGV 197

Query: 59  KAVTNYAIIYKPIAEAKAKGFTDVLFLNAE--KYIEEVSTSNIFLVKGNEISTPPTSGTI 116
           K+ TNY+ + K + EAK+ GF+DVLFL+A   K IEE+S  NIF++KGN +STPPTSGTI
Sbjct: 198 KSCTNYSPVVKSLIEAKSSGFSDVLFLDAATGKNIEELSACNIFILKGNIVSTPPTSGTI 257

Query: 117 LPGITRKSIIEITHVLGYQVKERAIPVEELFDAEEVFCTGTAVGVNSVNSITYQDERIEY 176
           LPG+TRKSI E+   +GYQV+ER + V+EL +AEEVFCTGTAV V +V ++T+ D++++Y
Sbjct: 258 LPGVTRKSISELARDIGYQVEERDVSVDELLEAEEVFCTGTAVVVKAVETVTFHDKKVKY 317

Query: 177 KRGAGTVGQKLYEMVTGIQTGRIEDKMGWTVELD 210
           + G   +  KL+ ++T IQ G +EDK GW VE+D
Sbjct: 318 RTGEEALSTKLHLILTNIQMGVVEDKKGWMVEID 351

Length = 355

>gnl|CDD|215418 PLN02782, PLN02782, Branched-chain amino acid aminotransferase

 Score =  289 bits (742), Expect = 5e-98
 Identities = 132/215 (61%), Positives = 166/215 (77%), Gaps = 6/215 (2%)

Query: 1   MYIRPLLMGSGPVLGVAPASEYTFITYASPVGNYHK-GL--LNLIVEEKFRRAIPGGTGG 57
           +YIRPLLMGSG VLG+APA EYTF+ Y SPVGNY K G+  +NLIVE +F RA PGGTGG
Sbjct: 188 LYIRPLLMGSGAVLGLAPAPEYTFLIYVSPVGNYFKEGVAPINLIVENEFHRATPGGTGG 247

Query: 58  VKAVTNYAIIYKPIAEAKAKGFTDVLFLNA--EKYIEEVSTSNIFLVKGNEISTPPTSGT 115
           VK + NYA + K  + AKAKG++DVL+L+   +KY+EEVS+ NIF+VK N ISTP   GT
Sbjct: 248 VKTIGNYAAVLKAQSIAKAKGYSDVLYLDCVHKKYLEEVSSCNIFIVKDNVISTPAIKGT 307

Query: 116 ILPGITRKSIIEITHVLGYQVKERAIPVEELFDAEEVFCTGTAVGVNSVNSITYQDERIE 175
           ILPGITRKSII++    G+QV+ER + V+EL +A+EVFCTGTAV V+ V SITY+ +R+ 
Sbjct: 308 ILPGITRKSIIDVARSQGFQVEERNVTVDELLEADEVFCTGTAVVVSPVGSITYKGKRVS 367

Query: 176 Y-KRGAGTVGQKLYEMVTGIQTGRIEDKMGWTVEL 209
           Y + G GTV Q+LY ++T +Q G IED M WTVEL
Sbjct: 368 YGEGGFGTVSQQLYTVLTSLQMGLIEDNMNWTVEL 402

Length = 403

>gnl|CDD|177901 PLN02259, PLN02259, branched-chain-amino-acid aminotransferase 2

 Score =  254 bits (649), Expect = 4e-84
 Identities = 128/215 (59%), Positives = 167/215 (77%), Gaps = 5/215 (2%)

Query: 1   MYIRPLLMGSGPVLGVAPASEYTFITYASPVGNYHK---GLLNLIVEEKFRRAIPGGTGG 57
           +YIRPLLMGSGP+LG+ PA EYTFI YASPVGNY K     LNL VEE++ RA PGG GG
Sbjct: 174 LYIRPLLMGSGPILGLGPAPEYTFIVYASPVGNYFKEGMAALNLYVEEEYVRAAPGGAGG 233

Query: 58  VKAVTNYAIIYKPIAEAKAKGFTDVLFLNA--EKYIEEVSTSNIFLVKGNEISTPPTSGT 115
           VK++TNYA + K ++ AK++GF+DVL+L++  +KY+EE S+ N+F+VKG  ISTP T+GT
Sbjct: 234 VKSITNYAPVLKALSRAKSRGFSDVLYLDSVKKKYLEEASSCNVFVVKGRTISTPATNGT 293

Query: 116 ILPGITRKSIIEITHVLGYQVKERAIPVEELFDAEEVFCTGTAVGVNSVNSITYQDERIE 175
           IL GITRKS++EI    GYQV E+A+ V+E+ DA+EVFCTGTAV V  V +ITYQ++R+E
Sbjct: 294 ILEGITRKSVMEIASDQGYQVVEKAVHVDEVMDADEVFCTGTAVVVAPVGTITYQEKRVE 353

Query: 176 YKRGAGTVGQKLYEMVTGIQTGRIEDKMGWTVELD 210
           YK G  +V QKL  ++ GIQTG IED  GW  +++
Sbjct: 354 YKTGDESVCQKLRSVLVGIQTGLIEDNKGWVTDIN 388

Length = 388

>gnl|CDD|237363 PRK13357, PRK13357, branched-chain amino acid aminotransferase; Provisional

 Score =  249 bits (638), Expect = 1e-82
 Identities = 94/222 (42%), Positives = 126/222 (56%), Gaps = 12/222 (5%)

Query: 1   MYIRPLLMGSGPVLGVAPASEYTFITYASPVGNYHKGLLN---LIVEEKFRRAIPGGTGG 57
           +Y+RP ++ + P LGV PA EY F   ASPVG Y KG +    + V +++ RA PGGTG 
Sbjct: 135 LYLRPFMIATEPFLGVKPAEEYIFCVIASPVGAYFKGGVKPVSIWVSDEYDRAAPGGTGA 194

Query: 58  VKAVTNYAIIYKPIAEAKAKGFTDVLFLNAE--KYIEEVSTSNIFLVKGNEISTPPTSGT 115
            K   NYA      AEAK KG   VL+L+A    YIEEV   N F +  +   TPP SG+
Sbjct: 195 AKVGGNYAASLLAQAEAKEKGCDQVLYLDAVEHTYIEEVGGMNFFFITKDGTVTPPLSGS 254

Query: 116 ILPGITRKSIIEITHVLGYQVKERAIPVEELFDA------EEVFCTGTAVGVNSVNSITY 169
           ILPGITR S++++   LG  V+ER + ++E           E F  GTA  +  +  I Y
Sbjct: 255 ILPGITRDSLLQLAEDLGLTVEERPVSIDEWQADAASGEFTEAFACGTAAVITPIGGIKY 314

Query: 170 QDERIEYKRG-AGTVGQKLYEMVTGIQTGRIEDKMGWTVELD 210
           +D+      G  G V QKLY+ +TGIQ G +ED  GW V++D
Sbjct: 315 KDKEFVIGDGEVGPVTQKLYDELTGIQFGDVEDPHGWIVKVD 356

Length = 356

>gnl|CDD|178471 PLN02883, PLN02883, Branched-chain amino acid aminotransferase

 Score =  240 bits (614), Expect = 7e-79
 Identities = 128/214 (59%), Positives = 158/214 (73%), Gaps = 5/214 (2%)

Query: 1   MYIRPLLMGSGPVLGVAPASEYTFITYASPVGNYHK---GLLNLIVEEKFRRAIPGGTGG 57
           +Y+RPLL GSG  LGVA A EYTF+ + SPV NY K     LNL VEE   RA  GGTGG
Sbjct: 170 LYLRPLLFGSGASLGVAAAPEYTFLVFGSPVQNYFKEGTAALNLYVEEVIPRAYLGGTGG 229

Query: 58  VKAVTNYAIIYKPIAEAKAKGFTDVLFLNAE--KYIEEVSTSNIFLVKGNEISTPPTSGT 115
           VKA++NY  + + +  AK++GF+DVL+L+A+  K IEEVS +NIFLVKGN I TP TSGT
Sbjct: 230 VKAISNYGPVLEVMRRAKSRGFSDVLYLDADTGKNIEEVSAANIFLVKGNIIVTPATSGT 289

Query: 116 ILPGITRKSIIEITHVLGYQVKERAIPVEELFDAEEVFCTGTAVGVNSVNSITYQDERIE 175
           IL GITRKSIIEI   LGY+V+ER +PVEEL +AEEVFCTGTA GV SV SIT+++ R E
Sbjct: 290 ILGGITRKSIIEIALDLGYKVEERRVPVEELKEAEEVFCTGTAAGVASVGSITFKNTRTE 349

Query: 176 YKRGAGTVGQKLYEMVTGIQTGRIEDKMGWTVEL 209
           YK G G V Q+L  ++ GIQTG I+D   W +++
Sbjct: 350 YKVGDGIVTQQLRSILLGIQTGSIQDTKDWVLQI 383

Length = 384

>gnl|CDD|238798 cd01557, BCAT_beta_family, BCAT_beta_family: Branched-chain aminotransferase catalyses the transamination of the branched-chain amino acids leusine, isoleucine and valine to their respective alpha-keto acids, alpha-ketoisocaproate, alpha-keto-beta-methylvalerate and alpha-ketoisovalerate

 Score =  230 bits (589), Expect = 2e-76
 Identities = 95/201 (47%), Positives = 122/201 (60%), Gaps = 6/201 (2%)

Query: 1   MYIRPLLMGSGPVLGVAPASEYTFITYASPVGNYHKGLL---NLIVEEKFRRAIPGGTGG 57
           +YIRP + G+ P LGV+PA EY F  +ASPVG Y KG     + +V   FRRA PGG G 
Sbjct: 81  LYIRPFIFGTDPQLGVSPALEYLFAVFASPVGAYFKGGEKGVSALVSS-FRRAAPGGPGA 139

Query: 58  VKAVTNYAIIYKPIAEAKAKGFTDVLFLNAE-KYIEEVSTSNIFLVKGNEISTPPTSGTI 116
            KA  NYA       EA  KG+   L+L+    Y+ EV T NIF VK  E+ TPP  G+I
Sbjct: 140 AKAGGNYAASLLAQKEAAEKGYDQALWLDGAHGYVAEVGTMNIFFVKDGELITPPLDGSI 199

Query: 117 LPGITRKSIIEITHVLGYQVKERAIPVEELFDAEEVFCTGTAVGVNSVNSITYQDERIEY 176
           LPGITR SI+E+   LG +V+ER I  +EL++A+EVF TGTA  V  V  I Y+ +    
Sbjct: 200 LPGITRDSILELARDLGIKVEERPITRDELYEADEVFATGTAAVVTPVGEIDYRGKEPGE 259

Query: 177 KRGAGTVGQKLYEMVTGIQTG 197
               G V +KLY+++T IQ G
Sbjct: 260 GEV-GPVTKKLYDLLTDIQYG 279

The enzyme requires pyridoxal 5'-phosphate (PLP) as a cofactor to catalyze the reaction. It has been found that mammals have two foms of the enzyme - mitochondrial and cytosolic forms while bacteria contain only one form of the enzyme. The mitochondrial form plays a significant role in skeletal muscle glutamine and alanine synthesis and in interorgan nitrogen metabolism.Members of this subgroup are widely distributed in all three forms of life. Length = 279

>gnl|CDD|233278 TIGR01123, ilvE_II, branched-chain amino acid aminotransferase, group II

 Score =  191 bits (487), Expect = 1e-60
 Identities = 94/220 (42%), Positives = 130/220 (59%), Gaps = 11/220 (5%)

Query: 1   MYIRPLLMGSGPVLGVAPASEYTFITYASPVGNYHKGLL---NLIVEEKFRRAIPGGTGG 57
           +Y+RP ++G+ P LGV PA EY F  +ASPVG Y KG L   ++ V  ++ RA PGGTG 
Sbjct: 94  LYLRPFVIGTEPNLGVRPAPEYLFYVFASPVGAYFKGGLAPVSIFVTTEYDRAAPGGTGA 153

Query: 58  VKAVTNYAIIYKPIAEAKAKGFTDVLFLNA--EKYIEEVSTSNIFLVKGN-EISTPPTSG 114
           VK   NYA      A+A  +G   V++L+     YIEEV   N F + G+ E+ TPP SG
Sbjct: 154 VKVGGNYAASLLAQAKAAEQGCDQVVYLDPVEHTYIEEVGAMNFFFITGDGELVTPPLSG 213

Query: 115 TILPGITRKSIIEITHVLGYQVKERAIPVEELFDA----EEVFCTGTAVGVNSVNSITYQ 170
           +ILPGITR S++++   LG +V+ER I ++EL       EEVF  GTA  +  V  I + 
Sbjct: 214 SILPGITRDSLLQLAKDLGMEVEERRIDIDELKAFVEAGEEVFACGTAAVITPVGEIQHG 273

Query: 171 DERIEYKRGA-GTVGQKLYEMVTGIQTGRIEDKMGWTVEL 209
            + + +  G  G V + LY+ +T IQ G  ED  GW VE+
Sbjct: 274 GKEVVFASGQPGEVTKALYDELTDIQYGDFEDPYGWIVEV 313

Among the class IV aminotransferases are two phylogenetically separable groups of branched-chain amino acid aminotransferase (IlvE). The last common ancestor of the two lineages appears also to have given rise to a family of D-amino acid aminotransferases (DAAT). This model represents the IlvE family less similar to the DAAT family [Amino acid biosynthesis, Pyruvate family]. Length = 313

>gnl|CDD|238254 cd00449, PLPDE_IV, PyridoxaL 5'-Phosphate Dependent Enzymes class IV (PLPDE_IV)

 Score =  185 bits (472), Expect = 6e-59
 Identities = 86/193 (44%), Positives = 107/193 (55%), Gaps = 9/193 (4%)

Query: 2   YIRPLLMGSGPVLGVAP--ASEYTFITYASPVGNYHKGL---LNLIVEEKFRRAIPGGTG 56
           YIRPLL      LGVAP  + E TF+ +ASPVG Y KG    + LI     RRA PGGTG
Sbjct: 66  YIRPLLTRGVGGLGVAPPPSPEPTFVVFASPVGAYAKGGEKGVRLITSPDRRRAAPGGTG 125

Query: 57  GVKAVTNYAIIYKPIAEAKAKGFTDVLFLNAEKYIEEVSTSNIFLVKGNEISTPPTSGTI 116
             K   N   +     EA   G  + L L+   Y+ E S SN+F+VK  E+ TPP  G I
Sbjct: 126 DAKTGGNLNSV-LAKQEAAEAGADEALLLDDNGYVTEGSASNVFIVKDGELVTPPLDGGI 184

Query: 117 LPGITRKSIIEITHVLGYQVKERAIPVEELFDAEEVFCTGTAVGVNSVNSITYQDERIEY 176
           LPGITR S+IE+   LG +V+ER I ++EL+ A+EVF TGTA  V  V  I  +      
Sbjct: 185 LPGITRDSVIELAKELGIKVEERPISLDELYAADEVFLTGTAAEVTPVTEIDGRGIGDGK 244

Query: 177 KRGAGTVGQKLYE 189
               G V +KL E
Sbjct: 245 ---PGPVTRKLRE 254

This D-amino acid superfamily, one of five classes of PLPDE, consists of branched-chain amino acid aminotransferases (BCAT), D-amino acid transferases (DAAT), and 4-amino-4-deoxychorismate lyases (ADCL). BCAT catalyzes the reversible transamination reaction between the L-branched-chain amino and alpha-keto acids. DAAT catalyzes the synthesis of D-glutamic acid and D-alanine, and ADCL converts 4-amino-4-deoxychorismate to p-aminobenzoate and pyruvate. Except for a few enzymes, i. e., Escherichia coli and Salmonella BCATs, which are homohexamers arranged as a double trimer, the class IV PLPDEs are homodimers. Homodimer formation is required for catalytic activity. Length = 256

>gnl|CDD|223193 COG0115, IlvE, Branched-chain amino acid aminotransferase/4-amino-4-deoxychorismate lyase [Amino acid transport and metabolism / Coenzyme metabolism]

 Score =  170 bits (432), Expect = 1e-52
 Identities = 90/205 (43%), Positives = 116/205 (56%), Gaps = 13/205 (6%)

Query: 1   MYIRPLLMGSGPVLGVAPASEYTFITYASPVGNYHKGL-----LNLIVEEKFRRAIPGGT 55
           +YIRPL+ G G  LGV  A+E T I  ASPVG Y KG      + L++    RRA P G 
Sbjct: 87  LYIRPLVRGGGGGLGVRDATEPTLIVAASPVGAYLKGGRLEKGVVLVISSPVRRA-PPGP 145

Query: 56  GGVKAVTNYAIIYKPIAEAKAKGFTDVLFLNAEKYIEEVSTSNIFLVKGN-EISTPPTSG 114
           G  K   NY        EAKA G  + L L+ + Y+ E + SN+F VKG+  + TPP SG
Sbjct: 146 GAAKKTGNYLSSVLAKREAKAAGADEALLLDEDGYVTEGAGSNVFFVKGDGVLVTPPLSG 205

Query: 115 TILPGITRKSIIEITHVLGYQVKERAIPVEELFDAEEVFCTGTAVGVNSVNSITYQDERI 174
            ILPGITR S++E+   LG  V+ER I +E+L  A+EVF T TA GV  V  I  +  + 
Sbjct: 206 GILPGITRDSLLELAKELGLTVEERPITLEDLKQADEVFLTNTAAGVTPVGLIDGRVGQP 265

Query: 175 EYKRGAGTVGQKLYEMVTGIQTGRI 199
                 G V +KL E++T IQ G I
Sbjct: 266 ------GPVTKKLRELLTDIQYGEI 284

Length = 284

>gnl|CDD|235841 PRK06606, PRK06606, branched-chain amino acid aminotransferase; Validated

 Score =  132 bits (335), Expect = 9e-38
 Identities = 76/217 (35%), Positives = 103/217 (47%), Gaps = 23/217 (10%)

Query: 2   YIRPLLMGSGPVLGVAPAS-EYTFITYASPVGNY------HKGLLNLIVEEKFRRAIPGG 54
           YIRPL+      LGV P          A P G Y       KG+  + V   + R  P  
Sbjct: 96  YIRPLVFVGDEGLGVRPHGLPTDVAIAAWPWGAYLGEEALEKGI-RVKVS-SWTRHAPNS 153

Query: 55  T-GGVKAVTNY--AIIYKPIAEAKAKGFTDVLFLNAEKYIEEVSTSNIFLVKGNEISTPP 111
                KA  NY  +I+ K   EA+  G+ + L L+ E Y+ E S  NIF+V+   + TPP
Sbjct: 154 IPTRAKASGNYLNSILAK--TEARRNGYDEALLLDVEGYVSEGSGENIFIVRDGVLYTPP 211

Query: 112 TSGTILPGITRKSIIEITHVLGYQVKERAIPVEELFDAEEVFCTGTAVGVNSVNSITYQD 171
            + +IL GITR ++I +   LG +V ER I  +EL+ A+EVF TGTA  V  +  +   D
Sbjct: 212 LTSSILEGITRDTVITLAKDLGIEVIERRITRDELYIADEVFFTGTAAEVTPIREV---D 268

Query: 172 ERIEYKRGAGTVG---QKLYEMVTGIQTGRIEDKMGW 205
            R   + G G  G   +KL      I  GR E    W
Sbjct: 269 GR---QIGNGKRGPITEKLQSAYFDIVRGRTEKYAHW 302

Length = 306

>gnl|CDD|216275 pfam01063, Aminotran_4, Aminotransferase class IV

 Score =  127 bits (320), Expect = 2e-36
 Identities = 53/169 (31%), Positives = 82/169 (48%), Gaps = 4/169 (2%)

Query: 2   YIRPLLMGSGPVLGVAPASEYTFITYASPVGNYHKGLLNLIVEEKFRRA---IPGGTGGV 58
            +R L+       G++P      I  +            LI   K R +   +P    G 
Sbjct: 45  RLRILVSRGDGGRGLSPPEGAIPIIVSLIALASSAPPRLLITV-KLRLSSYPVPRPLAGH 103

Query: 59  KAVTNYAIIYKPIAEAKAKGFTDVLFLNAEKYIEEVSTSNIFLVKGNEISTPPTSGTILP 118
           K       +   +  A+  GF D L L+ +  + E STSNIF+VKG  + TPP    ILP
Sbjct: 104 KTTNYLDNVLAALRAAERAGFDDALLLDEDGNVTEGSTSNIFIVKGGTLYTPPLESGILP 163

Query: 119 GITRKSIIEITHVLGYQVKERAIPVEELFDAEEVFCTGTAVGVNSVNSI 167
           GITR++++++   LG +V+ER + + +L +A+E F T +  GV  V SI
Sbjct: 164 GITRQALLDLAKELGIEVEERPLTLADLQEADEAFLTNSLRGVTPVTSI 212

The D-amino acid transferases (D-AAT) are required by bacteria to catalyze the synthesis of D-glutamic acid and D-alanine, which are essential constituents of bacterial cell wall and are the building block for other D-amino acids. Despite the difference in the structure of the substrates, D-AATs and L-ATTs have strong similarity. Length = 231

>gnl|CDD|130192 TIGR01122, ilvE_I, branched-chain amino acid aminotransferase, group I

 Score =  127 bits (320), Expect = 1e-35
 Identities = 78/218 (35%), Positives = 110/218 (50%), Gaps = 24/218 (11%)

Query: 2   YIRPLLMGSGPVLGVAPASEYT--FITYASPVGNY------HKGLLNLIVEEKFRRAIPG 53
           YIRPL+      LG+ P + Y    I  A P G Y       KG+   +    +RR  P 
Sbjct: 87  YIRPLVFRGDGDLGLNPRAGYKPDVIIAAWPWGAYLGEEALEKGIDAKVSS--WRRNAPN 144

Query: 54  GT-GGVKAVTNY--AIIYKPIAEAKAKGFTDVLFLNAEKYIEEVSTSNIFLVKGNEISTP 110
                 KA  NY  +++ K  +EA+  G+ + + L+ E Y+ E S  NIF+VK   + TP
Sbjct: 145 TIPTAAKAGGNYLNSLLAK--SEARRHGYDEAILLDVEGYVAEGSGENIFIVKDGVLFTP 202

Query: 111 PTSGTILPGITRKSIIEITHVLGYQVKERAIPVEELFDAEEVFCTGTAVGVNSVNSITYQ 170
           P + +ILPGITR ++I +   LG +V E+ I  EEL+ A+E F TGTA  +  +  +   
Sbjct: 203 PVTSSILPGITRDTVITLAKELGIEVVEQPISREELYTADEAFFTGTAAEITPIREV--- 259

Query: 171 DERIEYKRGAGTVG---QKLYEMVTGIQTGRIEDKMGW 205
           D R   K G G  G   +KL E    + TG  ED  GW
Sbjct: 260 DGR---KIGNGRRGPVTKKLQEAFFDLVTGGTEDYWGW 294

Among the class IV aminotransferases are two phylogenetically separable groups of branched-chain amino acid aminotransferase (IlvE). The last common ancestor of the two lineages appears also to have given rise to a family of D-amino acid aminotransferases (DAAT). This model represents the IlvE family more strongly similar to the DAAT family [Amino acid biosynthesis, Pyruvate family]. Length = 298

>gnl|CDD|238799 cd01558, D-AAT_like, D-Alanine aminotransferase (D-AAT_like): D-amino acid aminotransferase catalyzes transamination between D-amino acids and their respective alpha-keto acids

 Score =  103 bits (258), Expect = 8e-27
 Identities = 49/120 (40%), Positives = 67/120 (55%), Gaps = 9/120 (7%)

Query: 73  EAKAKGFTDVLFLNAEKYIEEVSTSNIFLVKGNEISTPPTSGTILPGITRKSIIEITHVL 132
           EAK  G  + + L+A+  + E S+SN+F+VK   + TPP    ILPGITR ++IE+   L
Sbjct: 155 EAKEAGADEAILLDADGLVTEGSSSNVFIVKNGVLVTPPLDNGILPGITRATVIELAKEL 214

Query: 133 GYQVKERAIPVEELFDAEEVFCTGTAVGVNSVNSITYQDERIEYKRGAGTVG---QKLYE 189
           G  V+ER   +EEL+ A+EVF T T   V  V  I   D R     G G  G   ++L E
Sbjct: 215 GIPVEERPFSLEELYTADEVFLTSTTAEVMPVVEI---DGRPI---GDGKPGPVTKRLRE 268

It plays a major role in the synthesis of bacterial cell wall components like D-alanine and D-glutamate in addition to other D-amino acids. The enzyme like other members of this superfamily requires PLP as a cofactor. Members of this subgroup are found in all three forms of life. Length = 270

>gnl|CDD|236238 PRK08320, PRK08320, branched-chain amino acid aminotransferase; Reviewed

 Score = 91.9 bits (229), Expect = 2e-22
 Identities = 38/86 (44%), Positives = 52/86 (60%)

Query: 73  EAKAKGFTDVLFLNAEKYIEEVSTSNIFLVKGNEISTPPTSGTILPGITRKSIIEITHVL 132
           EA   G  + + LN E Y+ E +  NIF+VK  ++ TPPT    L GITR ++IEI   L
Sbjct: 164 EANLAGVDEAIMLNDEGYVAEGTGDNIFIVKNGKLITPPTYAGALEGITRNAVIEIAKEL 223

Query: 133 GYQVKERAIPVEELFDAEEVFCTGTA 158
           G  V+E    + +L+ A+EVF TGTA
Sbjct: 224 GIPVREELFTLHDLYTADEVFLTGTA 249

Length = 288

>gnl|CDD|238800 cd01559, ADCL_like, ADCL_like: 4-Amino-4-deoxychorismate lyase: is a member of the fold-type IV of PLP dependent enzymes that converts 4-amino-4-deoxychorismate (ADC) to p-aminobenzoate and pyruvate

 Score = 90.4 bits (225), Expect = 3e-22
 Identities = 37/97 (38%), Positives = 56/97 (57%)

Query: 71  IAEAKAKGFTDVLFLNAEKYIEEVSTSNIFLVKGNEISTPPTSGTILPGITRKSIIEITH 130
             EA+ +G  + LFL+ +  + E + SN+F VK  E+ TP      L GITR+ +IE+  
Sbjct: 135 KREARDRGADEALFLDTDGRVIEGTASNLFFVKDGELVTPSLDRGGLAGITRQRVIELAA 194

Query: 131 VLGYQVKERAIPVEELFDAEEVFCTGTAVGVNSVNSI 167
             GY V ER + +E+L  A+E F T + +GV  V +I
Sbjct: 195 AKGYAVDERPLRLEDLLAADEAFLTNSLLGVAPVTAI 231

Based on the information available from the crystal structure, most members of this subgroup are likely to function as dimers. The enzyme from E.Coli, the structure of which is available, is a homodimer that is folded into a small and a larger domain. The coenzyme pyridoxal 5; -phosphate resides at the interface of the two domains that is linked by a flexible loop. Members of this subgroup are found in Eukaryotes and bacteria. Length = 249

>gnl|CDD|237362 PRK13356, PRK13356, aminotransferase; Provisional

 Score = 89.6 bits (223), Expect = 1e-21
 Identities = 55/182 (30%), Positives = 82/182 (45%), Gaps = 21/182 (11%)

Query: 2   YIRPLLMG-SGPVLGVAPASEYT---FITYASPVGNYHKGLLNLIVEEKFRRAIPGGTGG 57
           YIRP+     G   GVAP  E T        +P+     G    +    FRR        
Sbjct: 93  YIRPMYWAEDGFASGVAPDPESTRFALCLEEAPMPE-PTGFS--LTLSPFRRPTLE---- 145

Query: 58  VKAVTN------YAIIYKPIAEAKAKGFTDVLFLNAEKYIEEVSTSNIFLVKGNEISTPP 111
             A T+      Y    + + EA+++GF + L L+    + E +TSN+F+VK   + TP 
Sbjct: 146 -MAPTDAKAGCLYPNNARALREARSRGFDNALVLDMLGNVAETATSNVFMVKDGVVFTPV 204

Query: 112 TSGTILPGITRKSIIEITHVLGYQVKERAIPVEELFDAEEVFCTGT---AVGVNSVNSIT 168
            +GT L GITR+ +I +    G  V E  +  E+  +A+EVF TG     V V   +  +
Sbjct: 205 PNGTFLNGITRQRVIALLREDGVTVVETTLTYEDFLEADEVFSTGNYSKVVPVTRFDDRS 264

Query: 169 YQ 170
            Q
Sbjct: 265 LQ 266

Length = 286

>gnl|CDD|181025 PRK07544, PRK07544, branched-chain amino acid aminotransferase; Validated

 Score = 88.5 bits (220), Expect = 3e-21
 Identities = 42/94 (44%), Positives = 54/94 (57%), Gaps = 1/94 (1%)

Query: 74  AKAKGFTDVLFLNAEKYIEEVSTSNIFLVKGNEISTPPTSGTILPGITRKSIIEITHVLG 133
           A+AKG+ D L L+   Y+ E + +NIF VK   I TP T    L GITR+++IE+    G
Sbjct: 172 AEAKGYADALMLDYRGYVAEATGANIFFVKDGVIHTP-TPDCFLDGITRQTVIELAKRRG 230

Query: 134 YQVKERAIPVEELFDAEEVFCTGTAVGVNSVNSI 167
            +V ER I  EEL    E F TGTA  V  V+ I
Sbjct: 231 IEVVERHIMPEELAGFSECFLTGTAAEVTPVSEI 264

Length = 292

>gnl|CDD|236114 PRK07849, PRK07849, 4-amino-4-deoxychorismate lyase; Provisional

 Score = 73.8 bits (182), Expect = 6e-16
 Identities = 31/113 (27%), Positives = 58/113 (51%), Gaps = 4/113 (3%)

Query: 56  GGVKAVTNYAIIYKPIAEAKAKGFTDVLFLNAEKYIEEVSTSNIFLVKGNEISTPPTSGT 115
            G K + +YA+    +  A  +G  DV+F + + Y+ E  TS + +   + + TPP    
Sbjct: 156 AGAKTL-SYAVNMAALRYAARRGADDVIFTSTDGYVLEGPTSTVVIATDDRLLTPPPWYG 214

Query: 116 ILPGITRKSIIEITHVLGYQVKERAIPVEELFDAEEVFCT---GTAVGVNSVN 165
           ILPG T+ ++ E+    G+  + RA+   +LF A+ V+       A  V++++
Sbjct: 215 ILPGTTQAALFEVAREKGWDCEYRALRPADLFAADGVWLVSSVRLAARVHTLD 267

Length = 292

>gnl|CDD|181067 PRK07650, PRK07650, 4-amino-4-deoxychorismate lyase; Provisional

 Score = 70.4 bits (173), Expect = 1e-14
 Identities = 44/113 (38%), Positives = 58/113 (51%), Gaps = 11/113 (9%)

Query: 83  LFLNAEKYIEEVSTSNIFLVKGNEISTPPTSGTILPGITRKSIIEITHVLGYQVKERAIP 142
           +FL  E Y+ E   SN+F VKG+ + TP     IL GITR  +I++   LG +VKE    
Sbjct: 167 IFLTEEGYVAEGIVSNLFWVKGDIVYTPSLETGILNGITRAFVIKVLEELGIEVKEGFYT 226

Query: 143 VEELFDAEEVFCTGTAVGVNSVNSIT--YQDERIEYKRGAGTVG---QKLYEM 190
            EEL  A+EVF T      NS+  I    + E  ++    G V    Q LYEM
Sbjct: 227 KEELLSADEVFVT------NSIQEIVPLTRIEERDFPGKVGMVTKRLQNLYEM 273

Length = 283

>gnl|CDD|183549 PRK12479, PRK12479, branched-chain amino acid aminotransferase; Provisional

 Score = 70.4 bits (172), Expect = 1e-14
 Identities = 35/86 (40%), Positives = 50/86 (58%)

Query: 73  EAKAKGFTDVLFLNAEKYIEEVSTSNIFLVKGNEISTPPTSGTILPGITRKSIIEITHVL 132
           EA   G  + L LN + Y+ E S  N+F+VK  ++ TPP+    L GITR S+IE+   L
Sbjct: 165 EAAQAGVLEALMLNQQGYVCEGSGDNVFVVKDGKVLTPPSYLGALEGITRNSVIELCERL 224

Query: 133 GYQVKERAIPVEELFDAEEVFCTGTA 158
               +ER     +++ A+EVF TGTA
Sbjct: 225 SIPCEERPFTRHDVYVADEVFLTGTA 250

Length = 299

>gnl|CDD|132501 TIGR03461, pabC_Proteo, aminodeoxychorismate lyase

 Score = 69.2 bits (170), Expect = 3e-14
 Identities = 33/96 (34%), Positives = 56/96 (58%)

Query: 72  AEAKAKGFTDVLFLNAEKYIEEVSTSNIFLVKGNEISTPPTSGTILPGITRKSIIEITHV 131
           AE +     + L L+ +  + E + +NIF  KGN++ TP  S   + G+ R+ ++ +   
Sbjct: 150 AELENSEADEALVLDTDGNVVECTAANIFWRKGNQVFTPDLSYCGVAGVMRQHVLALLPA 209

Query: 132 LGYQVKERAIPVEELFDAEEVFCTGTAVGVNSVNSI 167
           LGY+++E    +EEL  A+EVF T + +GV  VN+I
Sbjct: 210 LGYEIEEVKAGLEELLSADEVFITNSLMGVVPVNAI 245

Members of this protein family are aminodeoxychorismate lyase (ADC lyase), EC 4.1.3.38, the PabC protein of PABA biosynthesis. PABA (para-aminobenzoate) is a precursor of folate, needed for de novo purine biosynthesis. This enzyme is a pyridoxal-phosphate-binding protein in the class IV aminotransferase family (pfam01063) [Biosynthesis of cofactors, prosthetic groups, and carriers, Folic acid]. Length = 261

>gnl|CDD|235696 PRK06092, PRK06092, 4-amino-4-deoxychorismate lyase; Reviewed

 Score = 67.9 bits (167), Expect = 7e-14
 Identities = 30/96 (31%), Positives = 49/96 (51%)

Query: 72  AEAKAKGFTDVLFLNAEKYIEEVSTSNIFLVKGNEISTPPTSGTILPGITRKSIIEITHV 131
           AE +     + L L++E ++ E   +N+F  KG  + TP      + G+ R+ I+E+   
Sbjct: 152 AELEQTEADEALVLDSEGWVIECCAANLFWRKGGVVYTPDLDQCGVAGVMRQFILELLAQ 211

Query: 132 LGYQVKERAIPVEELFDAEEVFCTGTAVGVNSVNSI 167
            GY V E    +EEL  A+EVF   + + V  V +I
Sbjct: 212 SGYPVVEVDASLEELLQADEVFICNSLMPVWPVRAI 247

Length = 268

>gnl|CDD|180656 PRK06680, PRK06680, D-amino acid aminotransferase; Reviewed

 Score = 59.9 bits (146), Expect = 5e-11
 Identities = 31/95 (32%), Positives = 53/95 (55%), Gaps = 2/95 (2%)

Query: 74  AKAKGFTDVLFLNAEKYIEEVSTSNIFLV-KGNEISTPPTSGTILPGITRKSIIEITHVL 132
           AK  G  +   ++ + ++ E ++SN ++V K  ++ T P    ILPGITR ++I++   L
Sbjct: 163 AKEAGAQEAWMVD-DGFVTEGASSNAWIVTKDGKLVTRPADNFILPGITRHTLIDLAKEL 221

Query: 133 GYQVKERAIPVEELFDAEEVFCTGTAVGVNSVNSI 167
           G +V+ER   ++E + A E F T  +  V  V  I
Sbjct: 222 GLEVEERPFTLQEAYAAREAFITAASSFVFPVVQI 256

Length = 286

>gnl|CDD|130191 TIGR01121, D_amino_aminoT, D-amino acid aminotransferase

 Score = 57.1 bits (138), Expect = 5e-10
 Identities = 28/77 (36%), Positives = 40/77 (51%)

Query: 91  IEEVSTSNIFLVKGNEISTPPTSGTILPGITRKSIIEITHVLGYQVKERAIPVEELFDAE 150
           + E S+SN++ +K   + T P +  IL GITR  I+      G  VKE     EEL +A+
Sbjct: 174 VTEGSSSNVYGIKDGVLYTHPANNLILNGITRMVILACAEENGIPVKEEPFTKEELLNAD 233

Query: 151 EVFCTGTAVGVNSVNSI 167
           EVF + T   +  V  I
Sbjct: 234 EVFVSSTTAEITPVIEI 250

This enzyme is a homodimer. The pyridoxal phosphate attachment site is the Lys at position 146 of the seed alignment, in the motif Cys-Asp-Ile-Lys-Ser-Leu-Asn. Specificity is broad for various D-amino acids, and differs among members of the family; the family is designated equivalog, but with this caveat attached [Energy metabolism, Amino acids and amines]. Length = 276

>gnl|CDD|171470 PRK12400, PRK12400, D-amino acid aminotransferase; Reviewed

 Score = 51.2 bits (122), Expect = 8e-08
 Identities = 29/89 (32%), Positives = 48/89 (53%), Gaps = 1/89 (1%)

Query: 73  EAKAKGFTDVLFLNAEKYIEEVSTSNIFLVKGNEISTPPTSGTILPGITRKSIIEITHVL 132
           +A+ KG  + LF+     + E S SN FL+K   + T P +  IL GI R+ ++ +   L
Sbjct: 164 KAERKGCKEALFVR-NGTVTEGSHSNFFLIKNGTLYTHPANHLILNGIIRQYVLSLAKTL 222

Query: 133 GYQVKERAIPVEELFDAEEVFCTGTAVGV 161
              V+E    V +++ A+E F TGT + +
Sbjct: 223 RIPVQEELFSVRDVYQADECFFTGTTIEI 251

Length = 290

>gnl|CDD|215454 PLN02845, PLN02845, Branched-chain-amino-acid aminotransferase-like protein

 Score = 50.8 bits (122), Expect = 1e-07
 Identities = 44/169 (26%), Positives = 73/169 (43%), Gaps = 32/169 (18%)

Query: 48  RRAIPGGTGGVKAVTN--------YAII----YKP----IAEAKAKGFTDVLFLNAEKYI 91
                    GVK VT+        +A +    Y P      EA+ +G    ++L+ E ++
Sbjct: 157 DTYAQDRPEGVKVVTSSVPIKPPQFATVKSVNYLPNALSQMEAEERGAFAGIWLDEEGFV 216

Query: 92  EEVSTSNI-FLVKGNEISTPPTSGTILPGITRKSIIEITHVLGYQ-----VKERAIPVEE 145
            E    N+ FL    E+  PP    IL G T + ++E+   L        VK+R I VEE
Sbjct: 217 AEGPNMNVAFLTNDGELVLPPFD-KILSGCTARRVLELAPRLVSPGDLRGVKQRKISVEE 275

Query: 146 LFDAEEVFCTGTAVGVNSVNSITYQDERIEYKRGAGTVG---QKLYEMV 191
              A+E+   G+ V V  +  +++  + I    G G VG     L++++
Sbjct: 276 AKAADEMMLIGSGVPVLPI--VSWDGQPI----GDGKVGPITLALHDLL 318

Length = 336

>gnl|CDD|169002 PRK07546, PRK07546, hypothetical protein; Provisional

 Score = 46.5 bits (111), Expect = 2e-06
 Identities = 22/84 (26%), Positives = 43/84 (51%), Gaps = 6/84 (7%)

Query: 72  AEAKAKGFTDVLFLNAEKYIEEVSTSNIFLVKGNEI-STPPTSGTILPGITRKSIIEITH 130
           AE       +V+ LN    + E + +N+FL +G  + +TPP S  +LPG+ R  +++   
Sbjct: 118 AELPPAEADEVILLNERGEVCEGTITNVFLDRGGGMLTTPPLSCGLLPGVLRAELLD--- 174

Query: 131 VLGYQVKERAIPVEELFDAEEVFC 154
               + +E  + V++L  A  ++ 
Sbjct: 175 --AGRAREAVLTVDDLKSARAIWV 196

Length = 209

>gnl|CDD|236438 PRK09266, PRK09266, hypothetical protein; Provisional

 Score = 42.3 bits (100), Expect = 6e-05
 Identities = 23/94 (24%), Positives = 40/94 (42%), Gaps = 2/94 (2%)

Query: 74  AKAKGFTDVLFLNAEKYIEEVSTSNIFLVKGNEISTPPTSGTILPGITRKSIIEITHVLG 133
           A+  GF D LF++ +  + E +T N+    G  +  P      LPG+T   +      LG
Sbjct: 148 AQRAGFDDALFVDPDGRVSEGATWNLGFWDGGAVVWP--QAPALPGVTMALLQRGLERLG 205

Query: 134 YQVKERAIPVEELFDAEEVFCTGTAVGVNSVNSI 167
              + R + + +L      F      G  +V++I
Sbjct: 206 IPQRTRPVTLADLGRFAGAFACNAWRGQRAVSAI 239

Length = 266

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	210
PLN02782	403	Branched-chain amino acid aminotransferase	100.0
PLN02259	388	branched-chain-amino-acid aminotransferase 2	100.0
PLN02883	384	Branched-chain amino acid aminotransferase	100.0
PLN03117	355	Branched-chain-amino-acid aminotransferase; Provis	100.0
TIGR01122	298	ilvE_I branched-chain amino acid aminotransferase,	100.0
TIGR01123	313	ilvE_II branched-chain amino acid aminotransferase	100.0
PRK06606	306	branched-chain amino acid aminotransferase; Valida	100.0
PRK13357	356	branched-chain amino acid aminotransferase; Provis	100.0
cd01557	279	BCAT_beta_family BCAT_beta_family: Branched-chain	100.0
KOG0975	379	consensus Branched chain aminotransferase BCAT1, p	100.0
PRK12479	299	branched-chain amino acid aminotransferase; Provis	100.0
PRK13356	286	aminotransferase; Provisional	100.0
PRK08320	288	branched-chain amino acid aminotransferase; Review	100.0
cd00449	256	PLPDE_IV PyridoxaL 5'-Phosphate Dependent Enzymes	100.0
PRK07544	292	branched-chain amino acid aminotransferase; Valida	100.0
PRK07650	283	4-amino-4-deoxychorismate lyase; Provisional	100.0
PRK06092	268	4-amino-4-deoxychorismate lyase; Reviewed	100.0
COG0115	284	IlvE Branched-chain amino acid aminotransferase/4-	100.0
cd01559	249	ADCL_like ADCL_like: 4-Amino-4-deoxychorismate lya	100.0
cd01558	270	D-AAT_like D-Alanine aminotransferase (D-AAT_like)	100.0
PRK12400	290	D-amino acid aminotransferase; Reviewed	100.0
PLN02845	336	Branched-chain-amino-acid aminotransferase-like pr	100.0
PRK06680	286	D-amino acid aminotransferase; Reviewed	100.0
PRK09266	266	hypothetical protein; Provisional	100.0
TIGR03461	261	pabC_Proteo aminodeoxychorismate lyase. Members of	100.0
PRK07849	292	4-amino-4-deoxychorismate lyase; Provisional	100.0
TIGR01121	276	D_amino_aminoT D-amino acid aminotransferase. Spec	100.0
PF01063	231	Aminotran_4: Aminotransferase class IV; InterPro:	100.0
PRK07546	209	hypothetical protein; Provisional	100.0
PRK07101	187	hypothetical protein; Provisional	99.92

>PLN02782 Branched-chain amino acid aminotransferase

Probab=100.00  E-value=7.1e-50  Score=356.90  Aligned_cols=210  Identities=62%  Similarity=1.039  Sum_probs=194.2

Q ss_pred             CeEEEEEEecCCCcCcCCCCCcEEEEEEEecCCCcC---CceEEEEEeeeeecCCCCCCCCccccChHHHHHHHHHHHHC
Q 028343            1 MYIRPLLMGSGPVLGVAPASEYTFITYASPVGNYHK---GLLNLIVEEKFRRAIPGGTGGVKAVTNYAIIYKPIAEAKAK   77 (210)
Q Consensus         1 ~yiR~~~~g~~~~~g~~~~~~~~~~i~~~p~~~~~~---~g~~~~~~~~~~r~~~~~l~~~K~~~~y~~~~~a~~ea~~~   77 (210)
                      +||||+++|+++.+|+.++.+++++|++.|.++++.   +++++.++++++|..|..++++|+++||+++++++++|+++
T Consensus       188 lyiRp~v~g~~~~lG~~~~~~~~~~i~~~p~~~~~~~g~~~v~l~v~~~~~Ra~p~g~g~~Kt~~nY~~~l~a~~eA~~~  267 (403)
T PLN02782        188 LYIRPLLMGSGAVLGLAPAPEYTFLIYVSPVGNYFKEGVAPINLIVENEFHRATPGGTGGVKTIGNYAAVLKAQSIAKAK  267 (403)
T ss_pred             EEEEEEEEecCCCcCcCCCCCcEEEEEEEECccccccCCccEEEEEeCceeecCCCCCcccchhhhHHHHHHHHHHHHHc
Confidence            599999998888889988888999999999887654   46778777568898888899999988999999999999999


Q ss_pred             CCCeEEEEc--CCCcEEEeCceEEEEEECCEEEccCCCCCCcccchHHHHHHHHHHcCCcEEEEecCHHHHhhhhhhhhc
Q 028343           78 GFTDVLFLN--AEKYIEEVSTSNIFLVKGNEISTPPTSGTILPGITRKSIIEITHVLGYQVKERAIPVEELFDAEEVFCT  155 (210)
Q Consensus        78 g~deal~ld--~~g~v~E~~~sNlf~~~~~~l~TP~l~~~~L~GitR~~vl~~a~~~gi~v~e~~i~~~el~~ade~f~t  155 (210)
                      |+||+||+|  ++|+|+|++++|+|++++++|+||+++.++|+||||+.||++|+++|++|+|++++++||.+|||+|+|
T Consensus       268 G~de~L~Ld~~~~g~V~E~~~sNlF~v~~~~l~TP~l~~~iLpGITR~svlela~~~Gi~V~Er~i~~~eL~~AdEvF~t  347 (403)
T PLN02782        268 GYSDVLYLDCVHKKYLEEVSSCNIFIVKDNVISTPAIKGTILPGITRKSIIDVARSQGFQVEERNVTVDELLEADEVFCT  347 (403)
T ss_pred             CCCEEEEEeCCCCCEEEEcCcEEEEEEECCEEEcCCCcCCcCcCHHHHHHHHHHHHcCCeEEEEECCHHHHhhCCEEEEc
Confidence            999999999  479999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ccccceEEEEEEEecCeEEeec-CCccHHHHHHHHHHHHhHccCCCCCCCCeEeCC
Q 028343          156 GTAVGVNSVNSITYQDERIEYK-RGAGTVGQKLYEMVTGIQTGRIEDKMGWTVELD  210 (210)
Q Consensus       156 ns~~gi~pV~~I~~~~~~i~~~-~~~g~~t~~L~~~~~~~~~g~~~~~~~w~~~~~  210 (210)
                      ||+.+|+||.+|+++|+.+.+. ++.||++++|++.|.++|+|+.+|+++|+.+|+
T Consensus       348 gTa~~V~PV~~I~~~g~~~~~~~g~~Gpvt~~L~~~l~~iq~G~~~~~~~W~~~v~  403 (403)
T PLN02782        348 GTAVVVSPVGSITYKGKRVSYGEGGFGTVSQQLYTVLTSLQMGLIEDNMNWTVELS  403 (403)
T ss_pred             cCcceEEEEEEEEECCEEEeCCCCCcCHHHHHHHHHHHHHhcCCCCCCCCCeEECC
Confidence            9999999999998788887443 457999999999999999999999999999885

>PLN02259 branched-chain-amino-acid aminotransferase 2

Probab=100.00  E-value=5.5e-50  Score=356.05  Aligned_cols=210  Identities=61%  Similarity=1.036  Sum_probs=191.8

Q ss_pred             CeEEEEEEecCCCcCcCCCCCcEEEEEEEecCCCcCCc---eEEEEEeeeeecCCCCCCCCccccChHHHHHHHHHHHHC
Q 028343            1 MYIRPLLMGSGPVLGVAPASEYTFITYASPVGNYHKGL---LNLIVEEKFRRAIPGGTGGVKAVTNYAIIYKPIAEAKAK   77 (210)
Q Consensus         1 ~yiR~~~~g~~~~~g~~~~~~~~~~i~~~p~~~~~~~g---~~~~~~~~~~r~~~~~l~~~K~~~~y~~~~~a~~ea~~~   77 (210)
                      +||||+++|+++.+|++++.+++++++++|.++++.+|   +++.+++++.|..|..++++|+.+||+++++++++|+++
T Consensus       174 lyiRp~v~g~~~~lG~~p~~~~~~~i~~~p~~~~~~~g~~~i~l~v~~~~~Ra~p~~~g~~K~~~NY~~~l~a~~eA~~~  253 (388)
T PLN02259        174 LYIRPLLMGSGPILGLGPAPEYTFIVYASPVGNYFKEGMAALNLYVEEEYVRAAPGGAGGVKSITNYAPVLKALSRAKSR  253 (388)
T ss_pred             EEEEEEEEecCCccCcCCCCCcEEEEEEEechhhhhcCcceEEEEeecceeccCCCCCcccchhhhHHHHHHHHHHHHHc
Confidence            59999999887778998877899999999998776544   456665567898888899999988999999999999999


Q ss_pred             CCCeEEEEcC--CCcEEEeCceEEEEEECCEEEccCCCCCCcccchHHHHHHHHHHcCCcEEEEecCHHHHhhhhhhhhc
Q 028343           78 GFTDVLFLNA--EKYIEEVSTSNIFLVKGNEISTPPTSGTILPGITRKSIIEITHVLGYQVKERAIPVEELFDAEEVFCT  155 (210)
Q Consensus        78 g~deal~ld~--~g~v~E~~~sNlf~~~~~~l~TP~l~~~~L~GitR~~vl~~a~~~gi~v~e~~i~~~el~~ade~f~t  155 (210)
                      ||||+||+|.  +|+|+|++++|+|++++++|+||+++.++|+||||+.|+++|+++|++|+|++++++||.+|||+|+|
T Consensus       254 G~de~L~Ld~~~~g~V~E~~~sNlF~v~~~~l~TP~l~~~iL~GITR~sIl~la~~~G~~V~Er~i~~~eL~~AdEvF~t  333 (388)
T PLN02259        254 GFSDVLYLDSVKKKYLEEASSCNVFVVKGRTISTPATNGTILEGITRKSVMEIASDQGYQVVEKAVHVDEVMDADEVFCT  333 (388)
T ss_pred             CCCEEEEecCCCCCEEEEcCcEEEEEEECCEEEcCCCcCCcCcCHHHHHHHHHHHHCCCeEEEEECCHHHHHhCCEEEEc
Confidence            9999999997  89999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ccccceEEEEEEEecCeEEeecCCccHHHHHHHHHHHHhHccCCCCCCCCeEeCC
Q 028343          156 GTAVGVNSVNSITYQDERIEYKRGAGTVGQKLYEMVTGIQTGRIEDKMGWTVELD  210 (210)
Q Consensus       156 ns~~gi~pV~~I~~~~~~i~~~~~~g~~t~~L~~~~~~~~~g~~~~~~~w~~~~~  210 (210)
                      ||+.+|+||.+|++.++.+.++++.||++++|+++|.+||+|+.+|+++|+.+|.
T Consensus       334 gTa~~V~PV~~I~~~~~~~~~~~~~g~~t~~L~~~l~~iq~G~~~~~~~W~~~~~  388 (388)
T PLN02259        334 GTAVVVAPVGTITYQEKRVEYKTGDESVCQKLRSVLVGIQTGLIEDNKGWVTDIN  388 (388)
T ss_pred             CCcceEEEEEEEecCCceEEeCCCCCHHHHHHHHHHHHHHcCCCCCCCCCeEECC
Confidence            9999999999998766665555456899999999999999999999999999873

>PLN02883 Branched-chain amino acid aminotransferase

Probab=100.00  E-value=9.9e-50  Score=353.80  Aligned_cols=209  Identities=61%  Similarity=0.971  Sum_probs=190.5

Q ss_pred             CeEEEEEEecCCCcCcCCCCCcEEEEEEEecCCCcC---CceEEEEEeeeeecCCCCCCCCccccChHHHHHHHHHHHHC
Q 028343            1 MYIRPLLMGSGPVLGVAPASEYTFITYASPVGNYHK---GLLNLIVEEKFRRAIPGGTGGVKAVTNYAIIYKPIAEAKAK   77 (210)
Q Consensus         1 ~yiR~~~~g~~~~~g~~~~~~~~~~i~~~p~~~~~~---~g~~~~~~~~~~r~~~~~l~~~K~~~~y~~~~~a~~ea~~~   77 (210)
                      +||||+++|+++.+|+.++.+++++|+++|.++++.   +++++.+++.++|..+..++++|+.+||+++++++++|+++
T Consensus       170 lYIRp~v~~~~~~lG~~~~~~~~~~i~~~p~~~y~~~g~~~v~l~~~~~~~Ra~~~g~g~~K~~~nYa~~lla~~eA~~~  249 (384)
T PLN02883        170 LYLRPLLFGSGASLGVAAAPEYTFLVFGSPVQNYFKEGTAALNLYVEEVIPRAYLGGTGGVKAISNYGPVLEVMRRAKSR  249 (384)
T ss_pred             EEEEEEEEecCCccCCCCCCCeEEEEEEEecccccccCcceEEEEECccccccCCCCCcccchhhhHHHHHHHHHHHHHC
Confidence            599999999888889988788999999999987765   35777776556888888999999988999999999999999


Q ss_pred             CCCeEEEEcCC--CcEEEeCceEEEEEECCEEEccCCCCCCcccchHHHHHHHHHHcCCcEEEEecCHHHHhhhhhhhhc
Q 028343           78 GFTDVLFLNAE--KYIEEVSTSNIFLVKGNEISTPPTSGTILPGITRKSIIEITHVLGYQVKERAIPVEELFDAEEVFCT  155 (210)
Q Consensus        78 g~deal~ld~~--g~v~E~~~sNlf~~~~~~l~TP~l~~~~L~GitR~~vl~~a~~~gi~v~e~~i~~~el~~ade~f~t  155 (210)
                      ||||+||+|.+  |+|+|++++|+|++++++|+||+++.++|+||||+.||++|+++|++|+|++++++||.+|||+|+|
T Consensus       250 G~de~L~Ld~~~~~~V~E~~~sNlF~v~~~~l~TP~l~~~iLpGITR~svl~la~~~G~~V~Er~i~~~eL~~AdEvF~t  329 (384)
T PLN02883        250 GFSDVLYLDADTGKNIEEVSAANIFLVKGNIIVTPATSGTILGGITRKSIIEIALDLGYKVEERRVPVEELKEAEEVFCT  329 (384)
T ss_pred             CCCEEEEEeCCCCCEEEEcCcEEEEEEECCEEEeCCCcCCcCcCHHHHHHHHHHHHCCCeEEEEECCHHHHHhCCEeeec
Confidence            99999999965  6999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ccccceEEEEEEEecCeEEeecCCccHHHHHHHHHHHHhHccCCCCCCCCeEeC
Q 028343          156 GTAVGVNSVNSITYQDERIEYKRGAGTVGQKLYEMVTGIQTGRIEDKMGWTVEL  209 (210)
Q Consensus       156 ns~~gi~pV~~I~~~~~~i~~~~~~g~~t~~L~~~~~~~~~g~~~~~~~w~~~~  209 (210)
                      ||+.+|+||.+|++.++.+.+..+.||++++|++.|.+||+|+.+|+++|+.+|
T Consensus       330 gTa~~I~PV~~I~~~~~~~~~~~~~G~vt~~L~~~l~~iq~G~~~d~~~W~~~~  383 (384)
T PLN02883        330 GTAAGVASVGSITFKNTRTEYKVGDGIVTQQLRSILLGIQTGSIQDTKDWVLQI  383 (384)
T ss_pred             cChhheEEEEEEeccCceeecccCCCHHHHHHHHHHHHHHcCCCCCCCCCeEeC
Confidence            999999999999866554422333589999999999999999999999999987

>PLN03117 Branched-chain-amino-acid aminotransferase; Provisional

Probab=100.00  E-value=3.5e-48  Score=341.93  Aligned_cols=210  Identities=61%  Similarity=1.023  Sum_probs=188.8

Q ss_pred             CeEEEEEEecCCCcCcCCCCCcEEEEEEEecCCCcC--CceEEEEEeeeeecCCCCCCCCccccChHHHHHHHHHHHHCC
Q 028343            1 MYIRPLLMGSGPVLGVAPASEYTFITYASPVGNYHK--GLLNLIVEEKFRRAIPGGTGGVKAVTNYAIIYKPIAEAKAKG   78 (210)
Q Consensus         1 ~yiR~~~~g~~~~~g~~~~~~~~~~i~~~p~~~~~~--~g~~~~~~~~~~r~~~~~l~~~K~~~~y~~~~~a~~ea~~~g   78 (210)
                      +||||+++|+++.+|+.+++++.+++++.|.++++.  +|+++.+++.++|..++.++++|+++||+++++++++|+++|
T Consensus       138 ~yir~~~~g~~~~~g~~~~~~~~~~i~~~p~~~~~~~~~gi~l~~~~~~~r~~~~~l~~~K~~~nyl~~vla~~eA~~~G  217 (355)
T PLN03117        138 LYIRPLLIGSGAVLGVAPAPEYTFLIYASPVGNYHKASSGLNLKVDHKHRRAHSGGTGGVKSCTNYSPVVKSLIEAKSSG  217 (355)
T ss_pred             EEEEEEEEEecCccCcCCCCCcEEEEEEEeccccccCCCCEEEEEcCceEeCCCCCccchhhhhhhHHHHHHHHHHHHCC
Confidence            499999998776778887667888999998865432  789988765577888888999999669999999999999999


Q ss_pred             CCeEEEEcCC--CcEEEeCceEEEEEECCEEEccCCCCCCcccchHHHHHHHHHHcCCcEEEEecCHHHHhhhhhhhhcc
Q 028343           79 FTDVLFLNAE--KYIEEVSTSNIFLVKGNEISTPPTSGTILPGITRKSIIEITHVLGYQVKERAIPVEELFDAEEVFCTG  156 (210)
Q Consensus        79 ~deal~ld~~--g~v~E~~~sNlf~~~~~~l~TP~l~~~~L~GitR~~vl~~a~~~gi~v~e~~i~~~el~~ade~f~tn  156 (210)
                      +||+||+|.+  |+|+|++++|||+++|++|+||+++.++|+||||+.|+++|+++|++|+|+.++++||.+|||+|+||
T Consensus       218 ~deaL~ld~~~~g~v~E~~~sNlF~v~~~~l~TP~l~~~iL~GItR~~vl~la~~~Gi~v~Er~i~~~eL~~AdEvFltn  297 (355)
T PLN03117        218 FSDVLFLDAATGKNIEELSACNIFILKGNIVSTPPTSGTILPGVTRKSISELARDIGYQVEERDVSVDELLEAEEVFCTG  297 (355)
T ss_pred             CCEEEEEeCCCCCEEEEcCcEEEEEEECCEEEeCCCcCCCCCCHHHHHHHHHHHHCCCEEEEEEccHHHHhhCCEEEEcc
Confidence            9999999974  69999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cccceEEEEEEEecCeEEeecCCccHHHHHHHHHHHHhHccCCCCCCCCeEeCC
Q 028343          157 TAVGVNSVNSITYQDERIEYKRGAGTVGQKLYEMVTGIQTGRIEDKMGWTVELD  210 (210)
Q Consensus       157 s~~gi~pV~~I~~~~~~i~~~~~~g~~t~~L~~~~~~~~~g~~~~~~~w~~~~~  210 (210)
                      |+.+|+||.+|++.++.+.+....+|+|++|+++|.++++|+.+|.++|+++|+
T Consensus       298 T~~~I~PV~~i~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~~~~~~~W~~~v~  351 (355)
T PLN03117        298 TAVVVKAVETVTFHDKKVKYRTGEEALSTKLHLILTNIQMGVVEDKKGWMVEID  351 (355)
T ss_pred             CcceEEEEEEEEecCceEEeCCCCChHHHHHHHHHHHHhCCCCCCCCCCEEEcc
Confidence            999999999998765555554345899999999999999999999999999873

>TIGR01122 ilvE_I branched-chain amino acid aminotransferase, group I

Probab=100.00  E-value=4.1e-47  Score=328.00  Aligned_cols=205  Identities=35%  Similarity=0.570  Sum_probs=183.7

Q ss_pred             CeEEEEEEecCCCcCcCCC--CCcEEEEEEEecCCCc-----CCceEEEEEeeeeecCCCCC-CCCccccChHHHHHHHH
Q 028343            1 MYIRPLLMGSGPVLGVAPA--SEYTFITYASPVGNYH-----KGLLNLIVEEKFRRAIPGGT-GGVKAVTNYAIIYKPIA   72 (210)
Q Consensus         1 ~yiR~~~~g~~~~~g~~~~--~~~~~~i~~~p~~~~~-----~~g~~~~~~~~~~r~~~~~l-~~~K~~~~y~~~~~a~~   72 (210)
                      .|||++++++.+++|+.++  .+|++++++.|++.++     .+|+++.++ +++|..+..+ +++||+|||+.++++++
T Consensus        86 ~~ir~~v~rg~~~~g~~~~~~~~~~~~v~~~~~~~~~~~~~~~~g~~l~~~-~~~r~~~~~~~~~~K~~~~yl~~v~a~~  164 (298)
T TIGR01122        86 AYIRPLVFRGDGDLGLNPRAGYKPDVIIAAWPWGAYLGEEALEKGIDAKVS-SWRRNAPNTIPTAAKAGGNYLNSLLAKS  164 (298)
T ss_pred             EEEEEEEEEccCCCCcCCCCCCCceEEEEEeccccccCcccccCCeEEEEE-EEEcCCCCCcCccchhhhhhHHHHHHHH
Confidence            4899999988888898864  3688899998875432     369999887 5677766654 89999866999999999


Q ss_pred             HHHHCCCCeEEEEcCCCcEEEeCceEEEEEECCEEEccCCCCCCcccchHHHHHHHHHHcCCcEEEEecCHHHHhhhhhh
Q 028343           73 EAKAKGFTDVLFLNAEKYIEEVSTSNIFLVKGNEISTPPTSGTILPGITRKSIIEITHVLGYQVKERAIPVEELFDAEEV  152 (210)
Q Consensus        73 ea~~~g~deal~ld~~g~v~E~~~sNlf~~~~~~l~TP~l~~~~L~GitR~~vl~~a~~~gi~v~e~~i~~~el~~ade~  152 (210)
                      +|+++|+||+||+|++|+|+|++++|+|+++||+|+||+++.++|+||||+.|+++|+++|++|+|++++++||.+|||+
T Consensus       165 ~a~~~g~de~l~ld~~g~v~E~s~sNlf~v~~~~l~TP~~~~~~L~GItR~~il~la~~~g~~v~e~~i~~~eL~~adev  244 (298)
T TIGR01122       165 EARRHGYDEAILLDVEGYVAEGSGENIFIVKDGVLFTPPVTSSILPGITRDTVITLAKELGIEVVEQPISREELYTADEA  244 (298)
T ss_pred             HHHHcCCCEEEEECCCCCEEECCceEEEEEECCEEECCCCCCCcCcchHHHHHHHHHHHcCCcEEEEeCCHHHHhhCCEE
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhcccccceEEEEEEEecCeEEeecCCccHHHHHHHHHHHHhHccCCCCCCCCeEeC
Q 028343          153 FCTGTAVGVNSVNSITYQDERIEYKRGAGTVGQKLYEMVTGIQTGRIEDKMGWTVEL  209 (210)
Q Consensus       153 f~tns~~gi~pV~~I~~~~~~i~~~~~~g~~t~~L~~~~~~~~~g~~~~~~~w~~~~  209 (210)
                      |+|||++||+||++|+  ++.++ ++++||++++|++.|.+.+++..+|.++|+..|
T Consensus       245 fltns~~gv~PV~~id--~~~~~-~~~~g~~~~~l~~~~~~~~~~~~~~~~~w~~~~  298 (298)
T TIGR01122       245 FFTGTAAEITPIREVD--GRKIG-NGRRGPVTKKLQEAFFDLVTGGTEDYWGWLTYV  298 (298)
T ss_pred             EEcCCcceEEEEEEEC--CEECC-CCCCChHHHHHHHHHHHHHcCCCCCcCCCceeC
Confidence            9999999999999995  67753 456899999999999999999888999998764

Among the class IV aminotransferases are two phylogenetically separable groups of branched-chain amino acid aminotransferase (IlvE). The last common ancestor of the two lineages appears also to have given rise to a family of D-amino acid aminotransferases (DAAT). This model represents the IlvE family more strongly similar to the DAAT family.

>TIGR01123 ilvE_II branched-chain amino acid aminotransferase, group II

Probab=100.00  E-value=4.9e-46  Score=323.39  Aligned_cols=209  Identities=44%  Similarity=0.771  Sum_probs=183.4

Q ss_pred             CeEEEEEEecCCCcCcCCCCCcEEEEEEEecCCCcCC---ceEEEEEeeeeecCCCCCCCCccccChHHHHHHHHHHHHC
Q 028343            1 MYIRPLLMGSGPVLGVAPASEYTFITYASPVGNYHKG---LLNLIVEEKFRRAIPGGTGGVKAVTNYAIIYKPIAEAKAK   77 (210)
Q Consensus         1 ~yiR~~~~g~~~~~g~~~~~~~~~~i~~~p~~~~~~~---g~~~~~~~~~~r~~~~~l~~~K~~~~y~~~~~a~~ea~~~   77 (210)
                      +|||++++++++.+|+.+++.+++++++.|+++++..   ++++..+..+.|..+..++++||..||+.+++|+++|+++
T Consensus        94 ~~ir~~v~~~~~~~g~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~l~~~K~~~nyl~~vla~~eA~~~  173 (313)
T TIGR01123        94 LYLRPFVIGTEPNLGVRPAPEYLFYVFASPVGAYFKGGLAPVSIFVTTEYDRAAPGGTGAVKVGGNYAASLLAQAKAAEQ  173 (313)
T ss_pred             EEEEeEEEecCCccccCCCCccEEEEEEEEchhhccccccceeEEecccceecCCCCCccceeccccHHHHHHHHHHHHC
Confidence            4899999988777888876678889999887654443   4466554456777776689999955999999999999999


Q ss_pred             CCCeEEEEcCCCc--EEEeCceEEEEEEC-CEEEccCCCCCCcccchHHHHHHHHHHcCCcEEEEecCHHHHhhh----h
Q 028343           78 GFTDVLFLNAEKY--IEEVSTSNIFLVKG-NEISTPPTSGTILPGITRKSIIEITHVLGYQVKERAIPVEELFDA----E  150 (210)
Q Consensus        78 g~deal~ld~~g~--v~E~~~sNlf~~~~-~~l~TP~l~~~~L~GitR~~vl~~a~~~gi~v~e~~i~~~el~~a----d  150 (210)
                      |+||+||+|++|+  |+|++++|+|++++ |+|+|||++.++|+||||+.|+++|+++|++|+|++++++||.+|    |
T Consensus       174 g~deal~ld~~g~g~v~E~~~sNlf~v~~~g~l~Tp~l~~~~L~GItR~~vi~l~~~~Gi~v~e~~i~~~~l~~A~~~~d  253 (313)
T TIGR01123       174 GCDQVVYLDPVEHTYIEEVGAMNFFFITGDGELVTPPLSGSILPGITRDSLLQLAKDLGMEVEERRIDIDELKAFVEAGE  253 (313)
T ss_pred             CCCEEEEEeCCCCeEEEEcCcEeEEEEEcCCEEEeCCCCCCCCcchHHHHHHHHHHHcCCeEEEEecCHHHHHHHHhcCC
Confidence            9999999999977  99999999999985 799999999999999999999999999999999999999999999    9


Q ss_pred             hhhhcccccceEEEEEEEecCeEEee-cCCccHHHHHHHHHHHHhHccCCCCCCCCeEeC
Q 028343          151 EVFCTGTAVGVNSVNSITYQDERIEY-KRGAGTVGQKLYEMVTGIQTGRIEDKMGWTVEL  209 (210)
Q Consensus       151 e~f~tns~~gi~pV~~I~~~~~~i~~-~~~~g~~t~~L~~~~~~~~~g~~~~~~~w~~~~  209 (210)
                      |+|+|||+.||+||++|+++++.+.+ .+++||++++|++.|.++++|+.++..+|+++|
T Consensus       254 evfltnS~~gi~PV~~i~~d~~~~~~~~g~~g~~~~~l~~~~~~~~~~~~~~~~~w~~~~  313 (313)
T TIGR01123       254 EVFACGTAAVITPVGEIQHGGKEVVFASGQPGEVTKALYDELTDIQYGDFEDPYGWIVEV  313 (313)
T ss_pred             EEEEccCceEEEEEEEEEECCeEEEcCCCCCChHHHHHHHHHHHHhcCCCCCCCCCeeeC
Confidence            99999999999999999656765433 346899999999999999999888999999986

Among the class IV aminotransferases are two phylogenetically separable groups of branched-chain amino acid aminotransferase (IlvE). The last common ancestor of the two lineages appears also to have given rise to a family of D-amino acid aminotransferases (DAAT). This model represents the IlvE family less similar to the DAAT family.

>PRK06606 branched-chain amino acid aminotransferase; Validated

Probab=100.00  E-value=5e-46  Score=322.45  Aligned_cols=205  Identities=34%  Similarity=0.524  Sum_probs=182.5

Q ss_pred             CeEEEEEEecCCCcCcCCC-CCcEEEEEEEecCCCc-----CCceEEEEEeeeeecCCCC-CCCCccccChHHHHHHHHH
Q 028343            1 MYIRPLLMGSGPVLGVAPA-SEYTFITYASPVGNYH-----KGLLNLIVEEKFRRAIPGG-TGGVKAVTNYAIIYKPIAE   73 (210)
Q Consensus         1 ~yiR~~~~g~~~~~g~~~~-~~~~~~i~~~p~~~~~-----~~g~~~~~~~~~~r~~~~~-l~~~K~~~~y~~~~~a~~e   73 (210)
                      .|||++++++.+++|+.+. ..+++++++.|+++++     .+|+++.++ +++|..++. ++++|++.||+.+++++++
T Consensus        95 ~~ir~~v~rg~~~~g~~~~~~~~~~~i~~~~~~~~~~~~~~~~gv~l~~~-~~~r~~~~~~~~~~K~~~nyl~~vla~~e  173 (306)
T PRK06606         95 AYIRPLVFVGDEGLGVRPHGLPTDVAIAAWPWGAYLGEEALEKGIRVKVS-SWTRHAPNSIPTRAKASGNYLNSILAKTE  173 (306)
T ss_pred             EEEEEEEEecCCccCcCCCCCCceEEEEEeccccccCcccccCCeEEEEe-eEecCCCCCcCcchhhhhccHHHHHHHHH
Confidence            4899999988878888765 3678888888866432     269999877 466766654 5889976699999999999


Q ss_pred             HHHCCCCeEEEEcCCCcEEEeCceEEEEEECCEEEccCCCCCCcccchHHHHHHHHHHcCCcEEEEecCHHHHhhhhhhh
Q 028343           74 AKAKGFTDVLFLNAEKYIEEVSTSNIFLVKGNEISTPPTSGTILPGITRKSIIEITHVLGYQVKERAIPVEELFDAEEVF  153 (210)
Q Consensus        74 a~~~g~deal~ld~~g~v~E~~~sNlf~~~~~~l~TP~l~~~~L~GitR~~vl~~a~~~gi~v~e~~i~~~el~~ade~f  153 (210)
                      |+++|+||+||+|++|+|+|++++|||++++|+|+||+++.++|+||||+.++++|+++|++|+|++++++||.+|||+|
T Consensus       174 a~~~G~de~l~l~~~g~v~E~~~sNlf~v~~~~l~TP~~~~giL~GitR~~vl~~~~~~g~~v~e~~i~~~eL~~Adevf  253 (306)
T PRK06606        174 ARRNGYDEALLLDVEGYVSEGSGENIFIVRDGVLYTPPLTSSILEGITRDTVITLAKDLGIEVIERRITRDELYIADEVF  253 (306)
T ss_pred             HHHcCCCEEEEECCCCCEEEcCceEEEEEECCEEECCCCcCCcCCCHHHHHHHHHHHHcCCcEEEEeCCHHHHhhCCEEE
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hcccccceEEEEEEEecCeEEeecCCccHHHHHHHHHHHHhHccCCCCCCCCeEeC
Q 028343          154 CTGTAVGVNSVNSITYQDERIEYKRGAGTVGQKLYEMVTGIQTGRIEDKMGWTVEL  209 (210)
Q Consensus       154 ~tns~~gi~pV~~I~~~~~~i~~~~~~g~~t~~L~~~~~~~~~g~~~~~~~w~~~~  209 (210)
                      +|||++||+||++|+  ++.++ ++++||++++|+++|.+.+.++.+|+.+|+.++
T Consensus       254 ltnS~~gi~PV~~id--~~~~~-~g~~g~~~~~L~~~~~~~~~~~~~~~~~~~~~~  306 (306)
T PRK06606        254 FTGTAAEVTPIREVD--GRQIG-NGKRGPITEKLQSAYFDIVRGRTEKYAHWLTPV  306 (306)
T ss_pred             EcCCcceEEEEEEEC--cEECC-CCCCCHHHHHHHHHHHHHHcCCCCCCCCCcccC
Confidence            999999999999995  77753 456899999999999999999888999998764

>PRK13357 branched-chain amino acid aminotransferase; Provisional

Probab=100.00  E-value=4.2e-46  Score=328.97  Aligned_cols=209  Identities=44%  Similarity=0.768  Sum_probs=185.7

Q ss_pred             CeEEEEEEecCCCcCcCCCCCcEEEEEEEecCCCcC---CceEEEEEeeeeecCCCCCCCCccccChHHHHHHHHHHHHC
Q 028343            1 MYIRPLLMGSGPVLGVAPASEYTFITYASPVGNYHK---GLLNLIVEEKFRRAIPGGTGGVKAVTNYAIIYKPIAEAKAK   77 (210)
Q Consensus         1 ~yiR~~~~g~~~~~g~~~~~~~~~~i~~~p~~~~~~---~g~~~~~~~~~~r~~~~~l~~~K~~~~y~~~~~a~~ea~~~   77 (210)
                      +|||++++++.+.+|+.+..++++++++.|+++++.   +|+++.+++.+.|..++.++++|+..||+.+++|++||+++
T Consensus       135 ~~ir~~v~rg~~~~g~~~~~~~~~~i~~~~~~~~~~~~~~~v~l~~~~~~~r~~~~~l~~~Kt~~nyl~~vla~~eA~~~  214 (356)
T PRK13357        135 LYLRPFMIATEPFLGVKPAEEYIFCVIASPVGAYFKGGVKPVSIWVSDEYDRAAPGGTGAAKVGGNYAASLLAQAEAKEK  214 (356)
T ss_pred             EEEEEEEEccCCcccccCCCccEEEEEEEechhhcccCCCceEEEEcCCeEecCCCCcchhhcccccHHHHHHHHHHHHC
Confidence            489999998877788876667899999998765433   57888766467787777789999944999999999999999


Q ss_pred             CCCeEEEEcC--CCcEEEeCceEEEEEECCEEEccCCCCCCcccchHHHHHHHHHHcCCcEEEEecCHHH------Hhhh
Q 028343           78 GFTDVLFLNA--EKYIEEVSTSNIFLVKGNEISTPPTSGTILPGITRKSIIEITHVLGYQVKERAIPVEE------LFDA  149 (210)
Q Consensus        78 g~deal~ld~--~g~v~E~~~sNlf~~~~~~l~TP~l~~~~L~GitR~~vl~~a~~~gi~v~e~~i~~~e------l~~a  149 (210)
                      |+||+||+|.  +|+|+|++++|+|++++++++|||++.++|+||||+.|+++|+++|++|+|++++++|      |.+|
T Consensus       215 G~deaL~ld~~~~G~V~E~s~sNlF~v~~~~l~TPpl~~giL~GItR~~vlela~~~Gi~v~e~~i~~~el~~~~~L~~A  294 (356)
T PRK13357        215 GCDQVLYLDAVEHTYIEEVGGMNFFFITKDGTVTPPLSGSILPGITRDSLLQLAEDLGLTVEERPVSIDEWQADAASGEF  294 (356)
T ss_pred             CCCEEEEEcCCCCCEEEEcCcEEEEEEECCEEEECCCCCCCCcchHHHHHHHHHHHCCCeEEEEecCHHHhhhhhccCcc
Confidence            9999999994  7999999999999999999999999999999999999999999999999999999999      8999


Q ss_pred             hhhhhcccccceEEEEEEEecC--eEEeecCCccHHHHHHHHHHHHhHccCCCCCCCCeEeCC
Q 028343          150 EEVFCTGTAVGVNSVNSITYQD--ERIEYKRGAGTVGQKLYEMVTGIQTGRIEDKMGWTVELD  210 (210)
Q Consensus       150 de~f~tns~~gi~pV~~I~~~~--~~i~~~~~~g~~t~~L~~~~~~~~~g~~~~~~~w~~~~~  210 (210)
                      ||+|+|||+.||+||++|++++  +.++ .+++||++++|+++|.+.++|+.+++.+|+++||
T Consensus       295 devFltnS~~gi~PV~~id~~~~~~~~~-~g~~g~~t~~L~~~~~~~~~~~~~~~~~w~~~~~  356 (356)
T PRK13357        295 TEAFACGTAAVITPIGGIKYKDKEFVIG-DGEVGPVTQKLYDELTGIQFGDVEDPHGWIVKVD  356 (356)
T ss_pred             eEEEEcccccEEEEEEEEEeCCCEEEcC-CCCCChHHHHHHHHHHHHhcCCCCCCCCCcEeCc
Confidence            9999999999999999997432  3432 4568999999999999999999899999999986

>cd01557 BCAT_beta_family BCAT_beta_family: Branched-chain aminotransferase catalyses the transamination of the branched-chain amino acids leusine, isoleucine and valine to their respective alpha-keto acids, alpha-ketoisocaproate, alpha-keto-beta-methylvalerate and alpha-ketoisovalerate

Probab=100.00  E-value=3.6e-44  Score=307.20  Aligned_cols=193  Identities=48%  Similarity=0.802  Sum_probs=173.1

Q ss_pred             CeEEEEEEecCCCcCcCCCCCcEEEEEEEecCCCcC---CceEEEEEeeeeecCCCCCCCCccccChHHHHHHHHHHHHC
Q 028343            1 MYIRPLLMGSGPVLGVAPASEYTFITYASPVGNYHK---GLLNLIVEEKFRRAIPGGTGGVKAVTNYAIIYKPIAEAKAK   77 (210)
Q Consensus         1 ~yiR~~~~g~~~~~g~~~~~~~~~~i~~~p~~~~~~---~g~~~~~~~~~~r~~~~~l~~~K~~~~y~~~~~a~~ea~~~   77 (210)
                      .|||++++++.+.+|+.++.+|++++++.|+++++.   +|+++.++ +++|..+..++.+|+..||+.+++++++|+++
T Consensus        81 ~~ir~~v~rg~~~~g~~~~~~~~~~i~~~~~~~~~~~~~~gv~l~~~-~~~r~~~~~~~~~K~~~nyl~~vla~~eA~~~  159 (279)
T cd01557          81 LYIRPFIFGTDPQLGVSPALEYLFAVFASPVGAYFKGGEKGVSALVS-SFRRAAPGGPGAAKAGGNYAASLLAQKEAAEK  159 (279)
T ss_pred             EEEEEEEEeccccCCcCCCCccEEEEEEEEccccccCCCCCeEEEEe-eEEcCCCCCCcccchhhccHHHHHHHHHHHHC
Confidence            389999998877788876667889999998876543   79999887 57787775667899755999999999999999


Q ss_pred             CCCeEEEEcCC-CcEEEeCceEEEEEECCEEEccCCCCCCcccchHHHHHHHHHHcCCcEEEEecCHHHHhhhhhhhhcc
Q 028343           78 GFTDVLFLNAE-KYIEEVSTSNIFLVKGNEISTPPTSGTILPGITRKSIIEITHVLGYQVKERAIPVEELFDAEEVFCTG  156 (210)
Q Consensus        78 g~deal~ld~~-g~v~E~~~sNlf~~~~~~l~TP~l~~~~L~GitR~~vl~~a~~~gi~v~e~~i~~~el~~ade~f~tn  156 (210)
                      |+||+||+|++ |+|+|++++|+|++++++|+||+++.++|+||||+.++++|+++|++|+|++++++||.+|||+|+||
T Consensus       160 g~de~l~ld~~~g~v~E~~~sNlf~v~~~~l~TP~~~~~~L~Gitr~~v~~~~~~~Gi~v~e~~i~~~~l~~ade~f~~n  239 (279)
T cd01557         160 GYDQALWLDGAHGYVAEVGTMNIFFVKDGELITPPLDGSILPGITRDSILELARDLGIKVEERPITRDELYEADEVFATG  239 (279)
T ss_pred             CCCEEEEEcCCCCEEEEeCcEEEEEEECCEEEcCCCcCCCCCchHHHHHHHHHHHcCCeEEEEeCCHHHHhhCCEEEEec
Confidence            99999999999 99999999999999999999999998999999999999999999999999999999999999999999


Q ss_pred             cccceEEEEEEEecCeEE--eecCCccHHHHHHHHHHHHhHcc
Q 028343          157 TAVGVNSVNSITYQDERI--EYKRGAGTVGQKLYEMVTGIQTG  197 (210)
Q Consensus       157 s~~gi~pV~~I~~~~~~i--~~~~~~g~~t~~L~~~~~~~~~g  197 (210)
                      |+.||+||++|+  ++.+  + .+++||++++|++.|.++++|
T Consensus       240 s~~gi~pV~~i~--~~~~~~~-~~~~gp~~~~l~~~~~~~~~~  279 (279)
T cd01557         240 TAAVVTPVGEID--YRGKEPG-EGEVGPVTKKLYDLLTDIQYG  279 (279)
T ss_pred             ceeEEEEEEEEc--cccccCC-CCCCCHHHHHHHHHHHHHhcC
Confidence            999999999995  6664  2 356899999999999998775

The enzyme requires pyridoxal 5'-phosphate (PLP) as a cofactor to catalyze the reaction. It has been found that mammals have two foms of the enzyme - mitochondrial and cytosolic forms while bacteria contain only one form of the enzyme. The mitochondrial form plays a significant role in skeletal muscle glutamine and alanine synthesis and in interorgan nitrogen metabolism.Members of this subgroup are widely distributed in all three forms of life.

>KOG0975 consensus Branched chain aminotransferase BCAT1, pyridoxal phosphate enzymes type IV superfamily [Amino acid transport and metabolism]

Probab=100.00  E-value=1.9e-44  Score=311.10  Aligned_cols=207  Identities=54%  Similarity=0.848  Sum_probs=193.6

Q ss_pred             CeEEEEEEecCCCcCcCCCCCcEEEEEEEecCCCcC---CceEEEEEeeeeecCCCCCCCCccccChHHHHHHHHHHHHC
Q 028343            1 MYIRPLLMGSGPVLGVAPASEYTFITYASPVGNYHK---GLLNLIVEEKFRRAIPGGTGGVKAVTNYAIIYKPIAEAKAK   77 (210)
Q Consensus         1 ~yiR~~~~g~~~~~g~~~~~~~~~~i~~~p~~~~~~---~g~~~~~~~~~~r~~~~~l~~~K~~~~y~~~~~a~~ea~~~   77 (210)
                      |||||++.|++...|.++.++++++++++|..+|++   +|+++.+.+.++|+.|...++.|+++||+++++++.||+.+
T Consensus       162 Lyirp~l~Gt~~~Lgv~~~~e~~l~vi~spvg~yf~~g~~~v~L~v~~~~~Ra~pgg~g~~k~~~NY~P~vl~q~eA~~~  241 (379)
T KOG0975|consen  162 LYIRPLLIGTDPVLGVSPAPEATLFVIVSPVGPYFKSGFKGVNLLVDPEFVRAWPGGTGGVKLGGNYAPNVLAQKEAKSK  241 (379)
T ss_pred             EEEeeeeccCCcccccccCCcceEEEEEcccchhccccccceEEEEecceeecCCCCCCceeeccccchHHHHHHHHHhc
Confidence            699999999999999999999999999999999887   68899888889999999999999999999999999999999


Q ss_pred             CCCeEEEEcCCC-cEEEeCceEEEEEECCE--EEccCCCCCCcccchHHHHHHHHHHcC-CcEEEEecCHHHHhhhhhhh
Q 028343           78 GFTDVLFLNAEK-YIEEVSTSNIFLVKGNE--ISTPPTSGTILPGITRKSIIEITHVLG-YQVKERAIPVEELFDAEEVF  153 (210)
Q Consensus        78 g~deal~ld~~g-~v~E~~~sNlf~~~~~~--l~TP~l~~~~L~GitR~~vl~~a~~~g-i~v~e~~i~~~el~~ade~f  153 (210)
                      ||.++||||.++ +|+|.++.|+|++++|.  ++||+++..|||||||+.++++|++.| ++|+||.++++|+.+|+|+|
T Consensus       242 G~~dvLwL~~d~~~ItEv~tmNiF~v~~n~~elvTPp~dg~ILpGvTR~sileLa~~~g~~~V~Er~vtv~e~~~A~Evf  321 (379)
T KOG0975|consen  242 GASDVLWLDGDGGYITEVGTMNIFMVKKNEDELVTPPLDGTILPGVTRKSILELARDLGEFKVEERDVTVDELKTADEVF  321 (379)
T ss_pred             CcceeEEEecCCCceeeccceeEEEEEcCceeEecCCCCCcccCCccHHHHHHHHHHhCceEEEEEEEeHHHhhhhHhhh
Confidence            999999999886 99999999999999998  999999999999999999999999999 99999999999999999999


Q ss_pred             hcccccceEEEEEEEecC---eEEeec-CCccHHHHHHHHHHHHhHccCCCCCCCCeEe
Q 028343          154 CTGTAVGVNSVNSITYQD---ERIEYK-RGAGTVGQKLYEMVTGIQTGRIEDKMGWTVE  208 (210)
Q Consensus       154 ~tns~~gi~pV~~I~~~~---~~i~~~-~~~g~~t~~L~~~~~~~~~g~~~~~~~w~~~  208 (210)
                      .|+|+..|-||..|.+.+   +.-.+. |+.||++++|++.+.+||+|. +++.+|+++
T Consensus       322 ~tGTA~~v~pV~~i~~~~~~i~~~~~~~g~~g~l~~~l~~~l~~iq~g~-~~~~~w~~~  379 (379)
T KOG0975|consen  322 CTGTAAVVSPVGSILYKDEKIHIPTIGEGKEGPLAKKLLSTLTDIQYGR-EPKKGWTVP  379 (379)
T ss_pred             cccceeeeccccceeecccccceeecCCCCccHHHHHHHHHHHHhhcCC-cCCCCcccC
Confidence            999999999999999877   222233 458999999999999999999 889999874

>PRK12479 branched-chain amino acid aminotransferase; Provisional

Probab=100.00  E-value=3.1e-43  Score=304.13  Aligned_cols=195  Identities=29%  Similarity=0.405  Sum_probs=173.0

Q ss_pred             CeEEEEEEecCCCcCcCCC--CCcEEEEEEEecCCCc----CCceEEEEEeeeeecCCCCC-CCCccccChHHHHHHHHH
Q 028343            1 MYIRPLLMGSGPVLGVAPA--SEYTFITYASPVGNYH----KGLLNLIVEEKFRRAIPGGT-GGVKAVTNYAIIYKPIAE   73 (210)
Q Consensus         1 ~yiR~~~~g~~~~~g~~~~--~~~~~~i~~~p~~~~~----~~g~~~~~~~~~~r~~~~~l-~~~K~~~~y~~~~~a~~e   73 (210)
                      .|||++++++.+.+|+.+.  .+|++++++.|++.++    .+|+++.++ .++|..++.+ +.+||+ ||+.+++++++
T Consensus        88 ~~ir~~v~rg~g~~g~~~~~~~~~~~~i~~~~~~~~~~~~~~~gv~~~~~-~~~r~~~~~~~~~~K~~-nyl~~vla~~e  165 (299)
T PRK12479         88 AYIRLIVSRGKGDLGLDPRSCVKPSVIIIAEQLKLFPQEFYDNGLSVVSV-ASRRNTPDALDPRIKSM-NYLNNVLVKIE  165 (299)
T ss_pred             eEEEEEEEecCCCCCCCCccCCCceEEEEEEEcccCChhHHhCCeEEEEE-eEeccCCCccCccchhh-hhHHHHHHHHH
Confidence            3899999988788888765  3678999999875432    378988776 4677666655 699996 99999999999


Q ss_pred             HHHCCCCeEEEEcCCCcEEEeCceEEEEEECCEEEccCCCCCCcccchHHHHHHHHHHcCCcEEEEecCHHHHhhhhhhh
Q 028343           74 AKAKGFTDVLFLNAEKYIEEVSTSNIFLVKGNEISTPPTSGTILPGITRKSIIEITHVLGYQVKERAIPVEELFDAEEVF  153 (210)
Q Consensus        74 a~~~g~deal~ld~~g~v~E~~~sNlf~~~~~~l~TP~l~~~~L~GitR~~vl~~a~~~gi~v~e~~i~~~el~~ade~f  153 (210)
                      |+++|+||+||+|++|+|+|++++|+|++++++|+||+++.++|+||||+.++++|+++|++|+|+.++++||.+|||+|
T Consensus       166 a~~~g~de~l~ld~~g~v~E~s~sNlf~v~~~~l~TP~l~~giL~GItR~~il~~~~~~g~~v~e~~i~~~~L~~adevf  245 (299)
T PRK12479        166 AAQAGVLEALMLNQQGYVCEGSGDNVFVVKDGKVLTPPSYLGALEGITRNSVIELCERLSIPCEERPFTRHDVYVADEVF  245 (299)
T ss_pred             HHHcCCCEEEEEcCCCcEEECCceEEEEEECCEEEeCCCcCCCCcCHHHHHHHHHHHHcCCeEEEEeCCHHHHHhCCeee
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hcccccceEEEEEEEecCeEEeecCCccHHHHHHHHHHHHhHccCCC
Q 028343          154 CTGTAVGVNSVNSITYQDERIEYKRGAGTVGQKLYEMVTGIQTGRIE  200 (210)
Q Consensus       154 ~tns~~gi~pV~~I~~~~~~i~~~~~~g~~t~~L~~~~~~~~~g~~~  200 (210)
                      +|||++||+||++|+  ++.++ .+++||++++|+++|.+..++...
T Consensus       246 ltnS~~gi~PV~~id--~~~~~-~~~~g~~~~~l~~~~~~~~~~~~~  289 (299)
T PRK12479        246 LTGTAAELIPVVKVD--SREIG-DGKPGSVTKQLTEEFKKLTRERGV  289 (299)
T ss_pred             eecCcccEEEEEEEC--CEEcC-CCCcCHHHHHHHHHHHHHHhhcCC
Confidence            999999999999995  77753 557899999999999887776543

>PRK13356 aminotransferase; Provisional

Probab=100.00  E-value=2.5e-42  Score=296.65  Aligned_cols=189  Identities=29%  Similarity=0.428  Sum_probs=161.1

Q ss_pred             CeEEEEEEecCCCc-CcCCCC-CcEEEEEEEecCCCcCCceEEEEEeeeeecCCCC-CCCCccccChHHHHHHHHHHHHC
Q 028343            1 MYIRPLLMGSGPVL-GVAPAS-EYTFITYASPVGNYHKGLLNLIVEEKFRRAIPGG-TGGVKAVTNYAIIYKPIAEAKAK   77 (210)
Q Consensus         1 ~yiR~~~~g~~~~~-g~~~~~-~~~~~i~~~p~~~~~~~g~~~~~~~~~~r~~~~~-l~~~K~~~~y~~~~~a~~ea~~~   77 (210)
                      .|||++++++.+.+ |+.+++ .+.+++.+.+.+....+|+++.++ +++|..+.. .+++|+++||+.+++++++|+++
T Consensus        92 ~~ir~~v~rg~g~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~l~~~-~~~r~~~~~~~~~~K~~~nyl~~vla~~ea~~~  170 (286)
T PRK13356         92 LYIRPMYWAEDGFASGVAPDPESTRFALCLEEAPMPEPTGFSLTLS-PFRRPTLEMAPTDAKAGCLYPNNARALREARSR  170 (286)
T ss_pred             EEEEEEEEeccCcccCcCCCcCCceEEEEEEccCCCCCCcEEEEEe-eeecCCCCCCCccceeccchHHHHHHHHHHHHc
Confidence            38999999775544 444432 455566666554322379999887 567766554 36789777999999999999999


Q ss_pred             CCCeEEEEcCCCcEEEeCceEEEEEECCEEEccCCCCCCcccchHHHHHHHHHHcCCcEEEEecCHHHHhhhhhhhhccc
Q 028343           78 GFTDVLFLNAEKYIEEVSTSNIFLVKGNEISTPPTSGTILPGITRKSIIEITHVLGYQVKERAIPVEELFDAEEVFCTGT  157 (210)
Q Consensus        78 g~deal~ld~~g~v~E~~~sNlf~~~~~~l~TP~l~~~~L~GitR~~vl~~a~~~gi~v~e~~i~~~el~~ade~f~tns  157 (210)
                      |+||+||+|++|+|+|++++|||++++|+|+||+++.++|+||||+.|+++|++.|++|+|++++++||.+|||+|+|||
T Consensus       171 g~deal~ld~~G~v~E~~~sNlf~v~~~~l~TP~~~~~~L~GItR~~vi~~a~~~gi~v~e~~i~~~eL~~adevfltns  250 (286)
T PRK13356        171 GFDNALVLDMLGNVAETATSNVFMVKDGVVFTPVPNGTFLNGITRQRVIALLREDGVTVVETTLTYEDFLEADEVFSTGN  250 (286)
T ss_pred             CCCEEEEECCCCCEEEcCceEEEEEECCEEEcCCCCCCcccCHHHHHHHHHHHHcCCeEEEEecCHHHHHhcCceEEecC
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ccceEEEEEEEecCeEEeecCCccHHHHHHHHHHHHhHc
Q 028343          158 AVGVNSVNSITYQDERIEYKRGAGTVGQKLYEMVTGIQT  196 (210)
Q Consensus       158 ~~gi~pV~~I~~~~~~i~~~~~~g~~t~~L~~~~~~~~~  196 (210)
                      +.||+||++|+  ++.+    ++||++++|+++|.+..+
T Consensus       251 ~~gi~PV~~id--~~~~----~~g~~~~~l~~~~~~~~~  283 (286)
T PRK13356        251 YSKVVPVTRFD--DRSL----QPGPVTRRARELYWDWAH  283 (286)
T ss_pred             hheEEEEEEEC--CEEe----cCChHHHHHHHHHHHHHh
Confidence            99999999995  6764    368999999999987544

>PRK08320 branched-chain amino acid aminotransferase; Reviewed

Probab=100.00  E-value=3e-42  Score=296.29  Aligned_cols=191  Identities=34%  Similarity=0.505  Sum_probs=168.1

Q ss_pred             eEEEEEEecCCCcCcCCC--CCcEEEEEEEecCCCc----CCceEEEEEeeeeecCCCCC-CCCccccChHHHHHHHHHH
Q 028343            2 YIRPLLMGSGPVLGVAPA--SEYTFITYASPVGNYH----KGLLNLIVEEKFRRAIPGGT-GGVKAVTNYAIIYKPIAEA   74 (210)
Q Consensus         2 yiR~~~~g~~~~~g~~~~--~~~~~~i~~~p~~~~~----~~g~~~~~~~~~~r~~~~~l-~~~K~~~~y~~~~~a~~ea   74 (210)
                      |||++++++.+.+|+.++  .+|.+++++.|+++++    .+|+++.++ .++|..++.+ +++|++ ||+.+++++++|
T Consensus        88 ~iri~v~rg~g~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~-~~~r~~~~~~~~~~K~~-nyl~~v~a~~~A  165 (288)
T PRK08320         88 YIRLVVSRGVGDLGLDPRKCPKPTVVCIAEPIGLYPGELYEKGLKVITV-STRRNRPDALSPQVKSL-NYLNNILAKIEA  165 (288)
T ss_pred             EEEEEEEECCCcCCCCcccCCCceEEEEEEEcCcCChhHHhcCeEEEEE-eeeccCCCCcCccchhh-hhHHHHHHHHHH
Confidence            799999988778888765  3577888888765433    278988776 4567665544 789996 999999999999


Q ss_pred             HHCCCCeEEEEcCCCcEEEeCceEEEEEECCEEEccCCCCCCcccchHHHHHHHHHHcCCcEEEEecCHHHHhhhhhhhh
Q 028343           75 KAKGFTDVLFLNAEKYIEEVSTSNIFLVKGNEISTPPTSGTILPGITRKSIIEITHVLGYQVKERAIPVEELFDAEEVFC  154 (210)
Q Consensus        75 ~~~g~deal~ld~~g~v~E~~~sNlf~~~~~~l~TP~l~~~~L~GitR~~vl~~a~~~gi~v~e~~i~~~el~~ade~f~  154 (210)
                      +++|+||+||+|++|+|+|++++|||++++|+|+||+++.++|+||||+.+++++++.|++|+|+.++++||.+|||+|+
T Consensus       166 ~~~g~de~L~ld~~g~v~E~s~sNlf~~~~~~l~TP~~~~~~L~GitR~~ll~~~~~~g~~v~e~~l~~~dL~~ade~f~  245 (288)
T PRK08320        166 NLAGVDEAIMLNDEGYVAEGTGDNIFIVKNGKLITPPTYAGALEGITRNAVIEIAKELGIPVREELFTLHDLYTADEVFL  245 (288)
T ss_pred             HHcCCCEEEEECCCCeEEEcCcEEEEEEECCEEECCCCcCCCCcCHHHHHHHHHHHHcCCeEEEEECCHHHHHhCCEEEE
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cccccceEEEEEEEecCeEEeecCCccHHHHHHHHHHHHhHcc
Q 028343          155 TGTAVGVNSVNSITYQDERIEYKRGAGTVGQKLYEMVTGIQTG  197 (210)
Q Consensus       155 tns~~gi~pV~~I~~~~~~i~~~~~~g~~t~~L~~~~~~~~~g  197 (210)
                      |||++||+||++|+  ++.++ .+++||++++|++.|.+....
T Consensus       246 ~ns~~gv~pV~~i~--~~~~~-~~~~g~~~~~l~~~~~~~~~~  285 (288)
T PRK08320        246 TGTAAEVIPVVKVD--GRVIG-DGKPGPITKKLLEEFRELTKK  285 (288)
T ss_pred             ecChhhEEEEEEEC--CEECC-CCCcCHHHHHHHHHHHHHHhh
Confidence            99999999999995  66653 456899999999999876543

>cd00449 PLPDE_IV PyridoxaL 5'-Phosphate Dependent Enzymes class IV (PLPDE_IV)

Probab=100.00  E-value=5.9e-42  Score=289.00  Aligned_cols=186  Identities=45%  Similarity=0.689  Sum_probs=164.0

Q ss_pred             CeEEEEEEecCCCcCcCCC--CCcEEEEEEEecCCC---cCCceEEEEEeeeeec-CCCCCCCCccccChHHHHHHHHHH
Q 028343            1 MYIRPLLMGSGPVLGVAPA--SEYTFITYASPVGNY---HKGLLNLIVEEKFRRA-IPGGTGGVKAVTNYAIIYKPIAEA   74 (210)
Q Consensus         1 ~yiR~~~~g~~~~~g~~~~--~~~~~~i~~~p~~~~---~~~g~~~~~~~~~~r~-~~~~l~~~K~~~~y~~~~~a~~ea   74 (210)
                      .|||+.++++.+.+|+.++  .+|++++++.|++++   +.+|+++.+++. .+. .++.++++|++ ||+.+++++++|
T Consensus        65 ~~ir~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~-~~~~~~~~~~~~Kt~-~~~~~~~a~~~a  142 (256)
T cd00449          65 LYIRPLLTRGVGGLGVAPPPSPEPTFVVFASPVGAYAKGGEKGVRLITSPD-RRRAAPGGTGDAKTG-GNLNSVLAKQEA  142 (256)
T ss_pred             EEEEEEEEecccccCCCCCCCCCcEEEEEEeeccccccccCCCeEEEEeee-EEeCCCCCCccchhh-CCHHHHHHHHHH
Confidence            3799999988777888654  578999998888653   347999988744 443 45578999997 789999999999


Q ss_pred             HHCCCCeEEEEcCCCcEEEeCceEEEEEECCEEEccCCCCCCcccchHHHHHHHHHHcCCcEEEEecCHHHHhhhhhhhh
Q 028343           75 KAKGFTDVLFLNAEKYIEEVSTSNIFLVKGNEISTPPTSGTILPGITRKSIIEITHVLGYQVKERAIPVEELFDAEEVFC  154 (210)
Q Consensus        75 ~~~g~deal~ld~~g~v~E~~~sNlf~~~~~~l~TP~l~~~~L~GitR~~vl~~a~~~gi~v~e~~i~~~el~~ade~f~  154 (210)
                      +++|+||+||+|++|+|+|++++|+|++++|+|+||+++.|+|+||||+.++++|+++|++|+|+.++++||.+|||+|+
T Consensus       143 ~~~g~de~llld~~g~v~E~s~sNlf~~~~~~l~TP~~~~g~L~GitR~~vl~~~~~~g~~v~e~~i~~~dL~~adevfl  222 (256)
T cd00449         143 AEAGADEALLLDDNGYVTEGSASNVFIVKDGELVTPPLDGGILPGITRDSVIELAKELGIKVEERPISLDELYAADEVFL  222 (256)
T ss_pred             HHcCCCEEEEECCCCcEEEcCceEEEEEECCEEEeCCCCCCcCcchhHHHHHHHHHHcCCeEEEEecCHHHHhhCCEEEE
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cccccceEEEEEEEecCeEEeecCCccHHHHHHHHHH
Q 028343          155 TGTAVGVNSVNSITYQDERIEYKRGAGTVGQKLYEMV  191 (210)
Q Consensus       155 tns~~gi~pV~~I~~~~~~i~~~~~~g~~t~~L~~~~  191 (210)
                      |||++||+||++|+  ++.++ .+.+||++++|+++|
T Consensus       223 ~ns~~gv~pV~~i~--~~~~~-~~~~~~~~~~l~~~~  256 (256)
T cd00449         223 TGTAAEVTPVTEID--GRGIG-DGKPGPVTRKLRELL  256 (256)
T ss_pred             ccccceEEEEEEEC--CeecC-CCCCCHHHHHHHHhC
Confidence            99999999999995  66652 356899999998865

This D-amino acid superfamily, one of five classes of PLPDE, consists of branched-chain amino acid aminotransferases (BCAT), D-amino acid transferases (DAAT), and 4-amino-4-deoxychorismate lyases (ADCL). BCAT catalyzes the reversible transamination reaction between the L-branched-chain amino and alpha-keto acids. DAAT catalyzes the synthesis of D-glutamic acid and D-alanine, and ADCL converts 4-amino-4-deoxychorismate to p-aminobenzoate and pyruvate. Except for a few enzymes, i. e., Escherichia coli and Salmonella BCATs, which are homohexamers arranged as a double trimer, the class IV PLPDEs are homodimers. Homodimer formation is required for catalytic activity.

>PRK07544 branched-chain amino acid aminotransferase; Validated

Probab=100.00  E-value=9e-42  Score=294.01  Aligned_cols=191  Identities=32%  Similarity=0.466  Sum_probs=164.9

Q ss_pred             CeEEEEEEecCCCcCcCCCC-CcEEEEEEEecCCCc-----CCceEEEEEeeeeecCCCCC-CCCccccChHHHHHHHHH
Q 028343            1 MYIRPLLMGSGPVLGVAPAS-EYTFITYASPVGNYH-----KGLLNLIVEEKFRRAIPGGT-GGVKAVTNYAIIYKPIAE   73 (210)
Q Consensus         1 ~yiR~~~~g~~~~~g~~~~~-~~~~~i~~~p~~~~~-----~~g~~~~~~~~~~r~~~~~l-~~~K~~~~y~~~~~a~~e   73 (210)
                      .|||++++++.+.+|+.++. .+.++++..|+++++     .+|+++.++ .++|..+..+ ..+|+.+||+.+++++++
T Consensus        93 ~~ir~~v~rg~~~~g~~~~~~~~~~~v~~~~~~~~~~~~~~~~gv~l~~~-~~~r~~~~~~~~~~k~~~~yl~~vla~~~  171 (292)
T PRK07544         93 AYVRPVAWRGSEMMGVSAQQNKIHLAIAAWEWPSYFDPEAKMKGIRLDIA-KWRRPDPETAPSAAKAAGLYMICTISKHA  171 (292)
T ss_pred             eEEEEEEEecCCCCCcCCCCCCcEEEEEEeccccccCccccCCCEEEEEe-EEEcCCCCCcCHhhhhhcccHHHHHHHHH
Confidence            38999999888778887654 466777766654322     268999877 4677666544 567887799999999999


Q ss_pred             HHHCCCCeEEEEcCCCcEEEeCceEEEEEECCEEEccCCCCCCcccchHHHHHHHHHHcCCcEEEEecCHHHHhhhhhhh
Q 028343           74 AKAKGFTDVLFLNAEKYIEEVSTSNIFLVKGNEISTPPTSGTILPGITRKSIIEITHVLGYQVKERAIPVEELFDAEEVF  153 (210)
Q Consensus        74 a~~~g~deal~ld~~g~v~E~~~sNlf~~~~~~l~TP~l~~~~L~GitR~~vl~~a~~~gi~v~e~~i~~~el~~ade~f  153 (210)
                      |+++|+||+||+|++|+|+|++++|+|+++||+|+||+++ ++|+||||+.|+++|+++|++|+|++++++||.+|||+|
T Consensus       172 A~~~G~deal~ld~~g~V~E~~~sNlf~v~~~~l~TP~~~-~~L~GItR~~vl~~a~~~g~~v~e~~i~~~eL~~adevf  250 (292)
T PRK07544        172 AEAKGYADALMLDYRGYVAEATGANIFFVKDGVIHTPTPD-CFLDGITRQTVIELAKRRGIEVVERHIMPEELAGFSECF  250 (292)
T ss_pred             HHHcCCCeEEEECCCCCEEEcCceEEEEEECCEEECCCCc-ccccchhHHHHHHHHHHcCCeEEEEecCHHHHhhcCcee
Confidence            9999999999999999999999999999999999999985 599999999999999999999999999999999999999


Q ss_pred             hcccccceEEEEEEEecCeEEeecCCccHHHHHHHHHHHHhHccCC
Q 028343          154 CTGTAVGVNSVNSITYQDERIEYKRGAGTVGQKLYEMVTGIQTGRI  199 (210)
Q Consensus       154 ~tns~~gi~pV~~I~~~~~~i~~~~~~g~~t~~L~~~~~~~~~g~~  199 (210)
                      +|||++||+||++|+  ++.+    ++||++++|++.|.+..+++.
T Consensus       251 ltnS~~gi~PV~~i~--~~~~----~~g~~~~~l~~~~~~~~~~~~  290 (292)
T PRK07544        251 LTGTAAEVTPVSEIG--EYRF----TPGAITRDLMDDYEALVRPRA  290 (292)
T ss_pred             ecCccceEEEEEEEe--eEEe----CCChHHHHHHHHHHHHHhccc
Confidence            999999999999995  6654    378999999999988776653

>PRK07650 4-amino-4-deoxychorismate lyase; Provisional

Probab=100.00  E-value=1.2e-41  Score=291.97  Aligned_cols=191  Identities=28%  Similarity=0.353  Sum_probs=164.8

Q ss_pred             CeEEEEEEecCCCcCcCCC--CCcEEEEEEEecCCCcC-CceEEEEEeeeeecCCCCCCCCccccChHHHHHHHHHHHHC
Q 028343            1 MYIRPLLMGSGPVLGVAPA--SEYTFITYASPVGNYHK-GLLNLIVEEKFRRAIPGGTGGVKAVTNYAIIYKPIAEAKAK   77 (210)
Q Consensus         1 ~yiR~~~~g~~~~~g~~~~--~~~~~~i~~~p~~~~~~-~g~~~~~~~~~~r~~~~~l~~~K~~~~y~~~~~a~~ea~~~   77 (210)
                      .|||++++++.+.+|+.++  ..|+++++..|+++... .......+ ..+|..++.++++|++ ||+.+++++++|+++
T Consensus        84 ~~iRl~v~rg~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~Kt~-~y~~~v~a~~~a~~~  161 (283)
T PRK07650         84 AYVRFNVSAGIGEIGLQTEMYEEPTVIVYMKPLAPPGLPAEKEGVVL-KQRRNTPEGAFRLKSH-HYLNNILGKREIGND  161 (283)
T ss_pred             EEEEEEEEeCCCCCCCCCCCCCCCEEEEEEEcCCCCChhhcCeEEEE-EEEecCCCCCcchhHH-hHHHHHHHHHHHHHc
Confidence            3899999988777787654  46889999998754322 22222222 3556666678999996 999999999999999


Q ss_pred             CCCeEEEEcCCCcEEEeCceEEEEEECCEEEccCCCCCCcccchHHHHHHHHHHcCCcEEEEecCHHHHhhhhhhhhccc
Q 028343           78 GFTDVLFLNAEKYIEEVSTSNIFLVKGNEISTPPTSGTILPGITRKSIIEITHVLGYQVKERAIPVEELFDAEEVFCTGT  157 (210)
Q Consensus        78 g~deal~ld~~g~v~E~~~sNlf~~~~~~l~TP~l~~~~L~GitR~~vl~~a~~~gi~v~e~~i~~~el~~ade~f~tns  157 (210)
                      |+||+||+|++|+|+|++++|||++++|+|+||+++.|+|+||||+.++++|++.|++|+|+.++++||.+|||+|+|||
T Consensus       162 g~de~llln~~G~v~E~s~sNif~v~~g~l~TP~l~~g~L~GitR~~li~~~~~~g~~v~e~~i~~~dL~~adeifl~ns  241 (283)
T PRK07650        162 PNKEGIFLTEEGYVAEGIVSNLFWVKGDIVYTPSLETGILNGITRAFVIKVLEELGIEVKEGFYTKEELLSADEVFVTNS  241 (283)
T ss_pred             CCCeEEEECCCCeEEEcCceEEEEEECCEEEcCCCcCCCcccHHHHHHHHHHHHcCCeEEEEecCHHHHhhCCEeeeecC
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ccceEEEEEEEecCeEEeecCCccHHHHHHHHHHHHhHcc
Q 028343          158 AVGVNSVNSITYQDERIEYKRGAGTVGQKLYEMVTGIQTG  197 (210)
Q Consensus       158 ~~gi~pV~~I~~~~~~i~~~~~~g~~t~~L~~~~~~~~~g  197 (210)
                      ++|++||++|+  ++.+  .+++||++++|+++|.+...+
T Consensus       242 ~~gv~pV~~i~--~~~~--~g~~g~~~~~l~~~~~~~~~~  277 (283)
T PRK07650        242 IQEIVPLTRIE--ERDF--PGKVGMVTKRLQNLYEMQREK  277 (283)
T ss_pred             cccEEEEEEEC--CEEe--CCCCCHHHHHHHHHHHHHHHh
Confidence            99999999995  6764  567899999999999876554

>PRK06092 4-amino-4-deoxychorismate lyase; Reviewed

Probab=100.00  E-value=1.9e-41  Score=288.49  Aligned_cols=184  Identities=24%  Similarity=0.290  Sum_probs=162.4

Q ss_pred             eEEEEEEecCCCcCcCCC--CCcEEEEEEEecCCCc----CCceEEEEEeeeeecCCCCCCCCccccChHHHHHHHHHHH
Q 028343            2 YIRPLLMGSGPVLGVAPA--SEYTFITYASPVGNYH----KGLLNLIVEEKFRRAIPGGTGGVKAVTNYAIIYKPIAEAK   75 (210)
Q Consensus         2 yiR~~~~g~~~~~g~~~~--~~~~~~i~~~p~~~~~----~~g~~~~~~~~~~r~~~~~l~~~K~~~~y~~~~~a~~ea~   75 (210)
                      +||+.++++.+++|+.++  .+|.+++++.|+++++    .+|+++.++ +.++..++.++++|++ ||+.+++++++|+
T Consensus        78 ~iri~v~~g~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~gv~l~~~-~~~~~~~~~~~~~Kt~-ny~~~~~a~~~A~  155 (268)
T PRK06092         78 VLKVIISRGSGGRGYSPAGCAAPTRILSVSPYPAHYSRWREQGITLALC-PTRLGRNPLLAGIKHL-NRLEQVLIRAELE  155 (268)
T ss_pred             EEEEEEEccCCCCCCCCCCCCCCeEEEEeccCCccChhHhhCCEEEEEe-ccccCCCCCccCcchh-hhHHHHHHHHHHH
Confidence            799999987777788765  3568888888876543    278998876 4455555567899996 9999999999999


Q ss_pred             HCCCCeEEEEcCCCcEEEeCceEEEEEECCEEEccCCCCCCcccchHHHHHHHHHHcCCcEEEEecCHHHHhhhhhhhhc
Q 028343           76 AKGFTDVLFLNAEKYIEEVSTSNIFLVKGNEISTPPTSGTILPGITRKSIIEITHVLGYQVKERAIPVEELFDAEEVFCT  155 (210)
Q Consensus        76 ~~g~deal~ld~~g~v~E~~~sNlf~~~~~~l~TP~l~~~~L~GitR~~vl~~a~~~gi~v~e~~i~~~el~~ade~f~t  155 (210)
                      ++|+||+||+|++|+|+|++++|+|+++||+|+||+++.++|+||||+.++++|++.|++|+|+.++++||.+|||+|+|
T Consensus       156 ~~g~de~l~l~~~g~v~E~s~sNif~v~~~~~~TP~~~~~~L~GitR~~vl~~~~~~g~~v~e~~i~~~dL~~adevflt  235 (268)
T PRK06092        156 QTEADEALVLDSEGWVIECCAANLFWRKGGVVYTPDLDQCGVAGVMRQFILELLAQSGYPVVEVDASLEELLQADEVFIC  235 (268)
T ss_pred             hcCCCEEEEECCCCCEEEccceEEEEEECCEEECCCccccCcccHHHHHHHHHHHHcCCeEEEEECCHHHHhhCCEEEEe
Confidence            99999999999999999999999999999999999998899999999999999999999999999999999999999999


Q ss_pred             ccccceEEEEEEEecCeEEeecCCccHHHHHHHHHHHH
Q 028343          156 GTAVGVNSVNSITYQDERIEYKRGAGTVGQKLYEMVTG  193 (210)
Q Consensus       156 ns~~gi~pV~~I~~~~~~i~~~~~~g~~t~~L~~~~~~  193 (210)
                      ||++||+||.+|+  ++.+    ++||++++|+++|..
T Consensus       236 ns~~gi~pV~~id--~~~~----~~g~~~~~l~~~~~~  267 (268)
T PRK06092        236 NSLMPVWPVRAIG--ETSY----SSGTLTRYLQPLCER  267 (268)
T ss_pred             CCcceEEEEEEEC--CEEc----cchHHHHHHHHHHhc
Confidence            9999999999995  6664    368999999998864

>COG0115 IlvE Branched-chain amino acid aminotransferase/4-amino-4-deoxychorismate lyase [Amino acid transport and metabolism / Coenzyme metabolism]

Probab=100.00  E-value=3.8e-41  Score=289.17  Aligned_cols=191  Identities=45%  Similarity=0.667  Sum_probs=170.0

Q ss_pred             CeEEEEEEecCCCcCcCCCCCcEEEEEEEecCCCcC-----CceEEEEEeeeeecCCCCCCCCccccChHHHHHHHHHHH
Q 028343            1 MYIRPLLMGSGPVLGVAPASEYTFITYASPVGNYHK-----GLLNLIVEEKFRRAIPGGTGGVKAVTNYAIIYKPIAEAK   75 (210)
Q Consensus         1 ~yiR~~~~g~~~~~g~~~~~~~~~~i~~~p~~~~~~-----~g~~~~~~~~~~r~~~~~l~~~K~~~~y~~~~~a~~ea~   75 (210)
                      +|+||+++++++.+|+.+..++.+.++++|+++++.     +|+.+.+++.+++..++....+|+ .||+.+++++++|+
T Consensus        87 ~y~r~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~k~-~~y~~~~~a~~~A~  165 (284)
T COG0115          87 LYIRPLVRGGGGGLGVRDATEPTLIVAASPVGAYLKGGRLEKGVVLVISSPVRRAPPGPGAAKKT-GNYLSSVLAKREAK  165 (284)
T ss_pred             eEEEEEEEeecCCCCcCCCCccEEEEEEEecccccCcccccCCeEEEEeehhhccCCCcchhhhh-cccHHHHHHHHHHH
Confidence            699999999888888888668899999999998765     365666554555544443556887 49999999999999


Q ss_pred             HCCCCeEEEEcCCCcEEEeCceEEEEEE-CCEEEccCCCCCCcccchHHHHHHHHHHcCCcEEEEecCHHHHhhhhhhhh
Q 028343           76 AKGFTDVLFLNAEKYIEEVSTSNIFLVK-GNEISTPPTSGTILPGITRKSIIEITHVLGYQVKERAIPVEELFDAEEVFC  154 (210)
Q Consensus        76 ~~g~deal~ld~~g~v~E~~~sNlf~~~-~~~l~TP~l~~~~L~GitR~~vl~~a~~~gi~v~e~~i~~~el~~ade~f~  154 (210)
                      ++|+||+|++|.+|+|+|++++|+|+++ ||+++||+++.++|+||||+.+|++|+++|++++|++++.+||.+|||+|+
T Consensus       166 ~~G~~eal~~~~~G~V~Eg~~sNvf~v~~dg~~~TP~~~~~iL~GitR~~li~la~~~G~~v~E~~i~~~~l~~adevf~  245 (284)
T COG0115         166 AAGADEALLLDEDGYVTEGAGSNVFFVKGDGVLVTPPLSGGILPGITRDSLLELAKELGLTVEERPITLEDLKQADEVFL  245 (284)
T ss_pred             HCCCCEEEEecCCCeEEEcCcceEEEEEECCEEECCCCCCCccccHHHHHHHHHHHHcCceEEEeecCHHHHhhCCEEEE
Confidence            9999999999999999999999999999 889999999999999999999999999999999999999999999999999


Q ss_pred             cccccceEEEEEEEecCeEEeecCCccHHHHHHHHHHHHhHccC
Q 028343          155 TGTAVGVNSVNSITYQDERIEYKRGAGTVGQKLYEMVTGIQTGR  198 (210)
Q Consensus       155 tns~~gi~pV~~I~~~~~~i~~~~~~g~~t~~L~~~~~~~~~g~  198 (210)
                      |||+.+|+||.+|+  ++ .   +++||+|++|+++|.+++++.
T Consensus       246 t~t~~~v~PV~~i~--~~-~---~~~gpit~~l~~~~~~~~~~~  283 (284)
T COG0115         246 TNTAAGVTPVGLID--GR-V---GQPGPVTKKLRELLTDIQYGE  283 (284)
T ss_pred             EccceEEEEEEEEC--Cc-c---CCCChHHHHHHHHHHHHhccC
Confidence            99999999999994  44 2   579999999999999998875

>cd01559 ADCL_like ADCL_like: 4-Amino-4-deoxychorismate lyase: is a member of the fold-type IV of PLP dependent enzymes that converts 4-amino-4-deoxychorismate (ADC) to p-aminobenzoate and pyruvate

Probab=100.00  E-value=4e-41  Score=283.72  Aligned_cols=182  Identities=30%  Similarity=0.445  Sum_probs=161.7

Q ss_pred             eEEEEEEecCCCcCcCCC--CCcEEEEEEEecCC-CcCCceEEEEEeeeeecCCCCCCCCccccChHHHHHHHHHHHHCC
Q 028343            2 YIRPLLMGSGPVLGVAPA--SEYTFITYASPVGN-YHKGLLNLIVEEKFRRAIPGGTGGVKAVTNYAIIYKPIAEAKAKG   78 (210)
Q Consensus         2 yiR~~~~g~~~~~g~~~~--~~~~~~i~~~p~~~-~~~~g~~~~~~~~~~r~~~~~l~~~K~~~~y~~~~~a~~ea~~~g   78 (210)
                      |||++++++.+.+|+.++  .+|++++++.|++. .+.+|+++.++ +++|..++.++++|++ ||+.+++++++|+++|
T Consensus        65 ~ir~~v~rg~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~gv~l~~~-~~~~~~~~~~~~~Kt~-ny~~~~~a~~~a~~~g  142 (249)
T cd01559          65 RIRLILSRGPGGRGYAPSVCPGPALYVSVIPLPPAWRQDGVRLITC-PVRLGEQPLLAGLKHL-NYLENVLAKREARDRG  142 (249)
T ss_pred             EEEEEEecCCCCCCCCCCCCCCCEEEEEeccCCHHHHhCCcEEEEc-ccccCCCCCCCCcchh-hhHHHHHHHHHHHhcC
Confidence            799999977666777654  46788888888754 22379998877 4667667789999996 9999999999999999


Q ss_pred             CCeEEEEcCCCcEEEeCceEEEEEECCEEEccCCCCCCcccchHHHHHHHHHHcCCcEEEEecCHHHHhhhhhhhhcccc
Q 028343           79 FTDVLFLNAEKYIEEVSTSNIFLVKGNEISTPPTSGTILPGITRKSIIEITHVLGYQVKERAIPVEELFDAEEVFCTGTA  158 (210)
Q Consensus        79 ~deal~ld~~g~v~E~~~sNlf~~~~~~l~TP~l~~~~L~GitR~~vl~~a~~~gi~v~e~~i~~~el~~ade~f~tns~  158 (210)
                      +||+||+|++|+|+|++++|+|++++|+|+||+++.++|+||||+.++++++++|++++|+.++++||.+|||+|+|||+
T Consensus       143 ~de~l~l~~~g~v~E~~~~Nif~~~~~~~~TP~~~~g~L~Gitr~~~l~~~~~~g~~v~e~~i~~~el~~ade~~~~ns~  222 (249)
T cd01559         143 ADEALFLDTDGRVIEGTASNLFFVKDGELVTPSLDRGGLAGITRQRVIELAAAKGYAVDERPLRLEDLLAADEAFLTNSL  222 (249)
T ss_pred             CCEEEEEcCCCCEEEecceEEEEEECCEEECCCcccCccccHHHHHHHHHHHHcCceEEEEecCHHHHhhCCEEEEecCc
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cceEEEEEEEecCeEEeecCCccHHHHHHHHHH
Q 028343          159 VGVNSVNSITYQDERIEYKRGAGTVGQKLYEMV  191 (210)
Q Consensus       159 ~gi~pV~~I~~~~~~i~~~~~~g~~t~~L~~~~  191 (210)
                      +||+||++|+  +.    .+++||++++|+++|
T Consensus       223 ~gi~pV~~id--~~----~~~~~~~~~~l~~~~  249 (249)
T cd01559         223 LGVAPVTAID--DH----DGPPGPLTRALRELL  249 (249)
T ss_pred             cceeEEEEEC--Cc----ccCccHHHHHHHHhC
Confidence            9999999995  32    346899999999875

Based on the information available from the crystal structure, most members of this subgroup are likely to function as dimers. The enzyme from E.Coli, the structure of which is available, is a homodimer that is folded into a small and a larger domain. The coenzyme pyridoxal 5; -phosphate resides at the interface of the two domains that is linked by a flexible loop. Members of this subgroup are found in Eukaryotes and bacteria.

>cd01558 D-AAT_like D-Alanine aminotransferase (D-AAT_like): D-amino acid aminotransferase catalyzes transamination between D-amino acids and their respective alpha-keto acids

Probab=100.00  E-value=1.1e-40  Score=283.75  Aligned_cols=182  Identities=30%  Similarity=0.363  Sum_probs=157.2

Q ss_pred             eEEEEEEecCCCcCcCCC--CCcEEEEEEEecCCC----cCCceEEEEEeeeeecCCCCCCCCccccChHHHHHHHHHHH
Q 028343            2 YIRPLLMGSGPVLGVAPA--SEYTFITYASPVGNY----HKGLLNLIVEEKFRRAIPGGTGGVKAVTNYAIIYKPIAEAK   75 (210)
Q Consensus         2 yiR~~~~g~~~~~g~~~~--~~~~~~i~~~p~~~~----~~~g~~~~~~~~~~r~~~~~l~~~K~~~~y~~~~~a~~ea~   75 (210)
                      ++|+.++++.+++|+.++  .++++++++.|++++    +.+|+++.++ ..+|.   ..+++|++ ||+.+++++++|+
T Consensus        83 ~~~~~~t~g~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~gv~~~~~-~~~~~---~~~~~K~~-ny~~~~~a~~~a~  157 (270)
T cd01558          83 DVYIQVTRGVGPRGHDFPKCVKPTVVIITQPLPLPPAELLEKGVRVITV-PDIRW---LRCDIKSL-NLLNNVLAKQEAK  157 (270)
T ss_pred             eEEEEEEeCCCccCCCCCCCCCCEEEEEEEecCCCChhhhhcCeEEEEe-ccccc---CCCCchhh-ccHHHHHHHHHHH
Confidence            567777877667777664  357888888887642    2378988776 34443   34689996 9999999999999


Q ss_pred             HCCCCeEEEEcCCCcEEEeCceEEEEEECCEEEccCCCCCCcccchHHHHHHHHHHcCCcEEEEecCHHHHhhhhhhhhc
Q 028343           76 AKGFTDVLFLNAEKYIEEVSTSNIFLVKGNEISTPPTSGTILPGITRKSIIEITHVLGYQVKERAIPVEELFDAEEVFCT  155 (210)
Q Consensus        76 ~~g~deal~ld~~g~v~E~~~sNlf~~~~~~l~TP~l~~~~L~GitR~~vl~~a~~~gi~v~e~~i~~~el~~ade~f~t  155 (210)
                      ++|+||+||+|++|+|+|++++|||++++|+|+||+++.++|+||||+.++++|++.|++|+|+.++++||.+|||+|+|
T Consensus       158 ~~g~de~l~ld~~g~v~E~~~sNif~~~~~~l~TP~~~~~~L~GitR~~vl~~a~~~g~~v~e~~i~~~eL~~ade~fl~  237 (270)
T cd01558         158 EAGADEAILLDADGLVTEGSSSNVFIVKNGVLVTPPLDNGILPGITRATVIELAKELGIPVEERPFSLEELYTADEVFLT  237 (270)
T ss_pred             HcCCCEEEEEcCCCEEEEcCcEEEEEEECCEEECCCCcCCCCCChHHHHHHHHHHHcCCeEEEEeCCHHHHhhCCEEEEe
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ccccceEEEEEEEecCeEEeecCCccHHHHHHHHHH
Q 028343          156 GTAVGVNSVNSITYQDERIEYKRGAGTVGQKLYEMV  191 (210)
Q Consensus       156 ns~~gi~pV~~I~~~~~~i~~~~~~g~~t~~L~~~~  191 (210)
                      ||++||+||++|+  ++.++ .++.||++++|++.|
T Consensus       238 ns~~gv~PV~~i~--~~~~~-~~~~~~~~~~l~~~~  270 (270)
T cd01558         238 STTAEVMPVVEID--GRPIG-DGKPGPVTKRLREAY  270 (270)
T ss_pred             cCcccEEEEEEEC--CeECC-CCCCCHHHHHHHHhC
Confidence            9999999999995  66652 456799999998865

It plays a major role in the synthesis of bacterial cell wall components like D-alanine and D-glutamate in addition to other D-amino acids. The enzyme like other members of this superfamily requires PLP as a cofactor. Members of this subgroup are found in all three forms of life.

>PRK12400 D-amino acid aminotransferase; Reviewed

Probab=100.00  E-value=2.7e-40  Score=284.62  Aligned_cols=185  Identities=21%  Similarity=0.263  Sum_probs=157.6

Q ss_pred             eEEEEEEecCCCcCcCCC--CCcEEEEEEEecCCC---cCCceEEEEEeeeeecCCCCCCCCccccChHHHHHHHHHHHH
Q 028343            2 YIRPLLMGSGPVLGVAPA--SEYTFITYASPVGNY---HKGLLNLIVEEKFRRAIPGGTGGVKAVTNYAIIYKPIAEAKA   76 (210)
Q Consensus         2 yiR~~~~g~~~~~g~~~~--~~~~~~i~~~p~~~~---~~~g~~~~~~~~~~r~~~~~l~~~K~~~~y~~~~~a~~ea~~   76 (210)
                      +||+.++++.+.+|+.++  ..|++++++.+.+..   ..+|+++...++    .+..++++||+ ||+.+++++++|++
T Consensus        93 ~iri~v~rG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~----~~~~~~~~Kt~-nyl~~vla~~ea~~  167 (290)
T PRK12400         93 TIYLQVSRGVQARTHTFSYDVPPTIYAYITKKERPALWIEYGVRAISEPD----TRWLRCDIKSL-NLLPNILAATKAER  167 (290)
T ss_pred             EEEEEEEeCCCCCCCCCCCCCCcEEEEEEecccCchhHHhcCcEEEECCC----CCccCCCCccc-ccHHHHHHHHHHHH
Confidence            799999987766777654  356777776654321   136888765422    12235789996 99999999999999


Q ss_pred             CCCCeEEEEcCCCcEEEeCceEEEEEECCEEEccCCCCCCcccchHHHHHHHHHHcCCcEEEEecCHHHHhhhhhhhhcc
Q 028343           77 KGFTDVLFLNAEKYIEEVSTSNIFLVKGNEISTPPTSGTILPGITRKSIIEITHVLGYQVKERAIPVEELFDAEEVFCTG  156 (210)
Q Consensus        77 ~g~deal~ld~~g~v~E~~~sNlf~~~~~~l~TP~l~~~~L~GitR~~vl~~a~~~gi~v~e~~i~~~el~~ade~f~tn  156 (210)
                      +|+||+||+| +|+|+|++++|||+++||+|+|||++.++|+||||+.|+++|+++|++|+|+.++++||.+|||+|+||
T Consensus       168 ~g~deaL~l~-~g~v~E~t~sNif~v~~~~l~TPpl~~g~L~GItR~~llela~~~gi~v~E~~i~~~eL~~Adevfltn  246 (290)
T PRK12400        168 KGCKEALFVR-NGTVTEGSHSNFFLIKNGTLYTHPANHLILNGIIRQYVLSLAKTLRIPVQEELFSVRDVYQADECFFTG  246 (290)
T ss_pred             cCCCEEEEEc-CCEEEEcCceEEEEEECCEEEeCCCCCCcCcCHHHHHHHHHHHHcCCcEEEEeCCHHHHHhCCeeeEcc
Confidence            9999999997 899999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cccceEEEEEEEecCeEEeecCCccHHHHHHHHHHHHhH
Q 028343          157 TAVGVNSVNSITYQDERIEYKRGAGTVGQKLYEMVTGIQ  195 (210)
Q Consensus       157 s~~gi~pV~~I~~~~~~i~~~~~~g~~t~~L~~~~~~~~  195 (210)
                      |+.||+||++|+  ++.++ ++++||++++|++.|.+..
T Consensus       247 s~~gv~PV~~i~--~~~~~-~~~~g~~t~~l~~~~~~~~  282 (290)
T PRK12400        247 TTIEILPMTHLD--GTAIQ-DGQVGPITKMLQRSFSQSL  282 (290)
T ss_pred             CcceEEEEEEEC--CEECC-CCCcCHHHHHHHHHHHHHH
Confidence            999999999995  67653 5578999999999997643

>PLN02845 Branched-chain-amino-acid aminotransferase-like protein

Probab=100.00  E-value=2.6e-40  Score=289.96  Aligned_cols=190  Identities=24%  Similarity=0.307  Sum_probs=163.0

Q ss_pred             eEEEEEEecCCCcCcCCC--CCcEEEEEEEecCCCc--CCceEEEEEeeeeecCCCCCCCCccccChHHHHHHHHHHHHC
Q 028343            2 YIRPLLMGSGPVLGVAPA--SEYTFITYASPVGNYH--KGLLNLIVEEKFRRAIPGGTGGVKAVTNYAIIYKPIAEAKAK   77 (210)
Q Consensus         2 yiR~~~~g~~~~~g~~~~--~~~~~~i~~~p~~~~~--~~g~~~~~~~~~~r~~~~~l~~~K~~~~y~~~~~a~~ea~~~   77 (210)
                      +||++++++.+.+++.+.  .+|++++++.|.+...  .+|+++.++ ++++. ++.++++||+ ||+.+++|+++|+++
T Consensus       126 ~irl~vtrG~g~~~~~~~~~~~~~~~i~~~~~~~~~~~~~gv~l~~~-~~~~~-~~~~~~~Kt~-nyl~~vla~~eA~~~  202 (336)
T PLN02845        126 SLRYWLSAGPGGFSLSPSGCSEPAFYAVVIEDTYAQDRPEGVKVVTS-SVPIK-PPQFATVKSV-NYLPNALSQMEAEER  202 (336)
T ss_pred             EEEEEEEeCCCCCCCCCCCCCCCEEEEEEccccccccccCCeEEEEe-eeeec-CCccccchhh-hhHHHHHHHHHHHHc
Confidence            799999987666666544  4678888887654322  378888776 45553 3456889986 999999999999999


Q ss_pred             CCCeEEEEcCCCcEEEeCceEEEEEE-CCEEEccCCCCCCcccchHHHHHHHHHHc---C--CcEEEEecCHHHHhhhhh
Q 028343           78 GFTDVLFLNAEKYIEEVSTSNIFLVK-GNEISTPPTSGTILPGITRKSIIEITHVL---G--YQVKERAIPVEELFDAEE  151 (210)
Q Consensus        78 g~deal~ld~~g~v~E~~~sNlf~~~-~~~l~TP~l~~~~L~GitR~~vl~~a~~~---g--i~v~e~~i~~~el~~ade  151 (210)
                      |+||+||+|++|+|+|++++||||++ ||+|+||+++ ++|+||||+.|+++|+++   |  ++|+|+.++++||.+|||
T Consensus       203 G~deaLlln~~G~V~Egt~sNiF~v~~~~~l~TP~l~-~iL~GItR~~vlela~~~~~~G~~i~V~E~~i~~~eL~~AdE  281 (336)
T PLN02845        203 GAFAGIWLDEEGFVAEGPNMNVAFLTNDGELVLPPFD-KILSGCTARRVLELAPRLVSPGDLRGVKQRKISVEEAKAADE  281 (336)
T ss_pred             CCCEEEEECCCCcEEEcCcceEEEEEECCEEEeCCCC-CcCccHHHHHHHHHHHhhhccCCceEEEEEecCHHHHhcCCE
Confidence            99999999999999999999999885 9999999997 599999999999999986   8  899999999999999999


Q ss_pred             hhhcccccceEEEEEEEecCeEEeecCCccHHHHHHHHHHHHhHccC
Q 028343          152 VFCTGTAVGVNSVNSITYQDERIEYKRGAGTVGQKLYEMVTGIQTGR  198 (210)
Q Consensus       152 ~f~tns~~gi~pV~~I~~~~~~i~~~~~~g~~t~~L~~~~~~~~~g~  198 (210)
                      +|+|||++||+||++|+  ++.++ ++++||++++|+++|.+..++.
T Consensus       282 vFltnS~~gv~PV~~id--~~~~~-~g~~gp~t~~L~~~~~~~~~~~  325 (336)
T PLN02845        282 MMLIGSGVPVLPIVSWD--GQPIG-DGKVGPITLALHDLLLDDMRSG  325 (336)
T ss_pred             EEEecCcccEEEEEEEC--CEECC-CCCCCHHHHHHHHHHHHHHhcC
Confidence            99999999999999995  77753 4578999999999998877664

>PRK06680 D-amino acid aminotransferase; Reviewed

Probab=100.00  E-value=3.7e-40  Score=283.29  Aligned_cols=187  Identities=22%  Similarity=0.310  Sum_probs=162.4

Q ss_pred             eEEEEEEecCCCcCcCCC---CCcEEEEEEEecCCC-----cCCceEEEEEeeeeecCCCCCCCCccccChHHHHHHHHH
Q 028343            2 YIRPLLMGSGPVLGVAPA---SEYTFITYASPVGNY-----HKGLLNLIVEEKFRRAIPGGTGGVKAVTNYAIIYKPIAE   73 (210)
Q Consensus         2 yiR~~~~g~~~~~g~~~~---~~~~~~i~~~p~~~~-----~~~g~~~~~~~~~~r~~~~~l~~~K~~~~y~~~~~a~~e   73 (210)
                      +||+.++++.+++|+..+   .+|++++++.|++++     +.+|+++.+++. .|   ..++++||+ ||+.+++++++
T Consensus        88 ~lr~~vtrG~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~gv~~~~~~~-~~---~~~~~~Ks~-nyl~~vla~~e  162 (286)
T PRK06680         88 LVYLQVTRGVARRDHVFPAADVKPSVVVFAKSVDFARPAAAAETGIKVITVPD-NR---WKRCDIKSV-GLLPNVLAKQA  162 (286)
T ss_pred             EEEEEEEeCCCCCCCCCCCCCCCcEEEEEEEeccccCChhHHhCCeEEEEecC-CC---CCCCCcchh-ccHHHHHHHHH
Confidence            789999987766777632   468899999987642     237888776532 22   235689997 89999999999


Q ss_pred             HHHCCCCeEEEEcCCCcEEEeCceEEEEE-ECCEEEccCCCCCCcccchHHHHHHHHHHcCCcEEEEecCHHHHhhhhhh
Q 028343           74 AKAKGFTDVLFLNAEKYIEEVSTSNIFLV-KGNEISTPPTSGTILPGITRKSIIEITHVLGYQVKERAIPVEELFDAEEV  152 (210)
Q Consensus        74 a~~~g~deal~ld~~g~v~E~~~sNlf~~-~~~~l~TP~l~~~~L~GitR~~vl~~a~~~gi~v~e~~i~~~el~~ade~  152 (210)
                      |+++|+||+||+| +|+|+|++++|+|++ ++|+|+|||++.++|+||||+.++++|++.|++|+|+.++++||.+|||+
T Consensus       163 A~~~g~dd~l~ld-~g~v~E~~~sN~f~~~~~~~l~TP~~~~~iL~Gitr~~il~~a~~~g~~v~e~~i~~~el~~ade~  241 (286)
T PRK06680        163 AKEAGAQEAWMVD-DGFVTEGASSNAWIVTKDGKLVTRPADNFILPGITRHTLIDLAKELGLEVEERPFTLQEAYAAREA  241 (286)
T ss_pred             HHHCCCCEEEEec-CCEEEEcCcEEEEEEEECCEEEeCCCCCCCCcCHHHHHHHHHHHHcCCeEEEEcCCHHHHhcCcEE
Confidence            9999999999999 999999999999999 99999999999999999999999999999999999999999999999999


Q ss_pred             hhcccccceEEEEEEEecCeEEeecCCccHHHHHHHHHHHHhHcc
Q 028343          153 FCTGTAVGVNSVNSITYQDERIEYKRGAGTVGQKLYEMVTGIQTG  197 (210)
Q Consensus       153 f~tns~~gi~pV~~I~~~~~~i~~~~~~g~~t~~L~~~~~~~~~g  197 (210)
                      |+|||++||+||.+|+  ++.++ .+++||++++|+++|.+..++
T Consensus       242 f~~ns~~gi~pV~~id--~~~~~-~~~~g~~~~~L~~~~~~~~~~  283 (286)
T PRK06680        242 FITAASSFVFPVVQID--GKQIG-NGKPGPIAKRLREAYEEFARL  283 (286)
T ss_pred             EEecCcccEEEEEEEC--CEECC-CCCCCHHHHHHHHHHHHHHHh
Confidence            9999999999999995  67653 456899999999999876654

>PRK09266 hypothetical protein; Provisional

Probab=100.00  E-value=1e-39  Score=277.77  Aligned_cols=180  Identities=19%  Similarity=0.213  Sum_probs=155.8

Q ss_pred             CeEEEEEEecCCCcCcCCC-CCcEEEEEEEecCCCcCCceEEEEEeeeeecCCCCCCCCccccChHHHHHHHHHHHHCCC
Q 028343            1 MYIRPLLMGSGPVLGVAPA-SEYTFITYASPVGNYHKGLLNLIVEEKFRRAIPGGTGGVKAVTNYAIIYKPIAEAKAKGF   79 (210)
Q Consensus         1 ~yiR~~~~g~~~~~g~~~~-~~~~~~i~~~p~~~~~~~g~~~~~~~~~~r~~~~~l~~~K~~~~y~~~~~a~~ea~~~g~   79 (210)
                      .|||++++++.+.+|+.+. .+|++++++.|.++.+.+|+++.++ +.+|.    ++++||. ||+.+++++++|+++|+
T Consensus        80 ~~ir~~v~r~~g~~~~~~~~~~~~~~i~~~~~~~~~~~~v~l~~~-~~~r~----~~~~K~~-~~l~~vla~~~a~~~g~  153 (266)
T PRK09266         80 ASVRVTVFAPDFDFRNPLADVAPDVLVATSPPADGPAGPLRLQSV-PYERE----LPHIKHV-GTFGQLHLRRLAQRAGF  153 (266)
T ss_pred             EEEEEEEEecCcccCCCCCCCCceEEEEEecCCcCCCCCeEEEEE-Eeccc----CCCCCCC-CcHHHHHHHHHHHHcCC
Confidence            3899999976666676433 4678888888765544578988876 44553    4579997 78889999999999999


Q ss_pred             CeEEEEcCCCcEEEeCceEEEEEECCEEEccCCCCCCcccchHHHHHHHHHHcCCcEEEEecCHHHHhhhhhhhhccccc
Q 028343           80 TDVLFLNAEKYIEEVSTSNIFLVKGNEISTPPTSGTILPGITRKSIIEITHVLGYQVKERAIPVEELFDAEEVFCTGTAV  159 (210)
Q Consensus        80 deal~ld~~g~v~E~~~sNlf~~~~~~l~TP~l~~~~L~GitR~~vl~~a~~~gi~v~e~~i~~~el~~ade~f~tns~~  159 (210)
                      ||+||+|++|+|+|++++|||++++|+|+||+.  ++|+||||+.++++++++|++|+|+.++++||.+|||+|+|||++
T Consensus       154 de~l~ln~~g~v~E~~~sNlf~v~~~~l~TP~~--~~L~GItR~~ll~~~~~~g~~v~e~~i~~~eL~~adevfltnSl~  231 (266)
T PRK09266        154 DDALFVDPDGRVSEGATWNLGFWDGGAVVWPQA--PALPGVTMALLQRGLERLGIPQRTRPVTLADLGRFAGAFACNAWR  231 (266)
T ss_pred             CeEEEEcCCCcEEEcCceEEEEEECCEEECCCC--CccchHHHHHHHHHHHHcCCeeEEEECCHHHHHHhhHhhhhcCcc
Confidence            999999999999999999999999999999994  799999999999999999999999999999999999999999999


Q ss_pred             ceEEEEEEEecCeEEeecCCccHHHHHHHHHHHH
Q 028343          160 GVNSVNSITYQDERIEYKRGAGTVGQKLYEMVTG  193 (210)
Q Consensus       160 gi~pV~~I~~~~~~i~~~~~~g~~t~~L~~~~~~  193 (210)
                      ||+||.+|+  ++.+  . ..+|++++|+++|.+
T Consensus       232 gi~pV~~i~--~~~~--~-~~~~~~~~l~~~~~~  260 (266)
T PRK09266        232 GQRAVSAID--DVAL--P-DSHALLELLRRAYEA  260 (266)
T ss_pred             ceEEEEEEC--CEEC--C-CCchHHHHHHHHHHh
Confidence            999999995  6664  2 237999999999965

>TIGR03461 pabC_Proteo aminodeoxychorismate lyase

Probab=100.00  E-value=5.5e-40  Score=278.43  Aligned_cols=179  Identities=27%  Similarity=0.335  Sum_probs=156.9

Q ss_pred             eEEEEEEecCCCcCcCCC--CCcEEEEEEEecCCCc----CCceEEEEEeeeeecCCCCCCCCccccChHHHHHHHHHHH
Q 028343            2 YIRPLLMGSGPVLGVAPA--SEYTFITYASPVGNYH----KGLLNLIVEEKFRRAIPGGTGGVKAVTNYAIIYKPIAEAK   75 (210)
Q Consensus         2 yiR~~~~g~~~~~g~~~~--~~~~~~i~~~p~~~~~----~~g~~~~~~~~~~r~~~~~l~~~K~~~~y~~~~~a~~ea~   75 (210)
                      +||+.++++.+++|+.++  .++.+++++.|+++++    .+|+++.++ ..++..++.++++|++ ||+.+++++++|+
T Consensus        76 ~ir~~v~~g~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~g~~~~~~-~~~~~~~~~~~~~Kt~-~y~~~~~a~~~A~  153 (261)
T TIGR03461        76 VLKVIISRGSGGRGYSPPGCSDPTRIISVSPYPAHYSAWQQQGIRLGVS-PVRLGRNPLLAGIKHL-NRLEQVLIKAELE  153 (261)
T ss_pred             EEEEEEecCCCCCCCCCCCCCCCcEEEEeccCcccChhHhcCCEEEEEe-ccccCCCCCCcCcccc-ccHHHHHHHHHhh
Confidence            799999977666677654  4567888888876543    278888876 4555555567899996 9999999999999


Q ss_pred             HCCCCeEEEEcCCCcEEEeCceEEEEEECCEEEccCCCCCCcccchHHHHHHHHHHcCCcEEEEecCHHHHhhhhhhhhc
Q 028343           76 AKGFTDVLFLNAEKYIEEVSTSNIFLVKGNEISTPPTSGTILPGITRKSIIEITHVLGYQVKERAIPVEELFDAEEVFCT  155 (210)
Q Consensus        76 ~~g~deal~ld~~g~v~E~~~sNlf~~~~~~l~TP~l~~~~L~GitR~~vl~~a~~~gi~v~e~~i~~~el~~ade~f~t  155 (210)
                      ++|+||+||+|++|+|+|++++|+|+++||+|+||+++.++|+||||+.++++|++.|++|+|+.++++||.+|||+|+|
T Consensus       154 ~~g~de~llln~~g~v~E~s~sNif~~~~~~l~TP~~~~~~L~GItR~~il~~~~~~g~~v~E~~i~~~eL~~ade~f~~  233 (261)
T TIGR03461       154 NSEADEALVLDTDGNVVECTAANIFWRKGNQVFTPDLSYCGVAGVMRQHVLALLPALGYEIEEVKAGLEELLSADEVFIT  233 (261)
T ss_pred             hcCCCEEEEECCCCCEEEeccEEEEEEECCEEECCCccccCcccHHHHHHHHHHHHcCCeEEEEecCHHHHhhCCEEEEe
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ccccceEEEEEEEecCeEEeecCCccHHHHHHH
Q 028343          156 GTAVGVNSVNSITYQDERIEYKRGAGTVGQKLY  188 (210)
Q Consensus       156 ns~~gi~pV~~I~~~~~~i~~~~~~g~~t~~L~  188 (210)
                      ||++||+||++|+  ++.+    .+||++++|+
T Consensus       234 ns~~gi~pV~~id--~~~~----~~~~~~~~l~  260 (261)
T TIGR03461       234 NSLMGVVPVNAIG--ETSY----PSRTLTRLLQ  260 (261)
T ss_pred             CCccceEEEEEEC--CEEe----cchHHHHHhh
Confidence            9999999999995  6764    2579998875

Members of this protein family are aminodeoxychorismate lyase (ADC lyase), EC 4.1.3.38, the PabC protein of PABA biosynthesis. PABA (para-aminobenzoate) is a precursor of folate, needed for de novo purine biosynthesis. This enzyme is a pyridoxal-phosphate-binding protein in the class IV aminotransferase family (pfam01063).

>PRK07849 4-amino-4-deoxychorismate lyase; Provisional

Probab=100.00  E-value=1.5e-39  Score=280.38  Aligned_cols=181  Identities=22%  Similarity=0.319  Sum_probs=156.5

Q ss_pred             eEEEEEEecCCCcCcCCCCCcEEEEEEEecCCCc----CCceEEEEEeeeee------cCCCCCCCCccccChHHHHHHH
Q 028343            2 YIRPLLMGSGPVLGVAPASEYTFITYASPVGNYH----KGLLNLIVEEKFRR------AIPGGTGGVKAVTNYAIIYKPI   71 (210)
Q Consensus         2 yiR~~~~g~~~~~g~~~~~~~~~~i~~~p~~~~~----~~g~~~~~~~~~~r------~~~~~l~~~K~~~~y~~~~~a~   71 (210)
                      +||++++++.++.     ..|++++.+.|++..+    .+|+++.+++ .++      ..|..++++||+ ||+.+++++
T Consensus        98 ~iRl~v~~g~~~~-----~~~~~~i~~~p~~~~~~~~~~~gv~l~~~~-~~~~~~~~~~~p~~~~~~Kt~-ny~~~i~a~  170 (292)
T PRK07849         98 ALRLVYSRGRESG-----GAPTAWVTVSPVPERVARARREGVSVITLD-RGYPSDAAERAPWLLAGAKTL-SYAVNMAAL  170 (292)
T ss_pred             EEEEEEeCCCCCC-----CCCeEEEEEeecCccchhhccCCeEEEEEe-ccccCcccccCcccccccchh-hhHHHHHHH
Confidence            7999998765433     2577888888875332    3789887763 222      233356889996 999999999


Q ss_pred             HHHHHCCCCeEEEEcCCCcEEEeCceEEEEEECCEEEccCCCCCCcccchHHHHHHHHHHcCCcEEEEecCHHHHhhhhh
Q 028343           72 AEAKAKGFTDVLFLNAEKYIEEVSTSNIFLVKGNEISTPPTSGTILPGITRKSIIEITHVLGYQVKERAIPVEELFDAEE  151 (210)
Q Consensus        72 ~ea~~~g~deal~ld~~g~v~E~~~sNlf~~~~~~l~TP~l~~~~L~GitR~~vl~~a~~~gi~v~e~~i~~~el~~ade  151 (210)
                      ++|+++|+||+||+|.+|+|+|++++|||+++||+|+||+++.++|+||||+.++++|++.|++|+|+.++++||.+|||
T Consensus       171 ~~A~~~g~dd~L~ld~~G~v~E~s~~Nif~~~~g~l~TP~~~~giL~GItR~~vie~~~~~g~~v~er~i~~~eL~~Ade  250 (292)
T PRK07849        171 RYAARRGADDVIFTSTDGYVLEGPTSTVVIATDDRLLTPPPWYGILPGTTQAALFEVAREKGWDCEYRALRPADLFAADG  250 (292)
T ss_pred             HHHHHcCCCEEEEEcCCCcEEECCceEEEEEECCEEECCCCcCCCCccHHHHHHHHHHHHcCCceEEEECCHHHHhhCCE
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhhcccccceEEEEEEEecCeEEeecCCccHHHHHHHHHHHHhH
Q 028343          152 VFCTGTAVGVNSVNSITYQDERIEYKRGAGTVGQKLYEMVTGIQ  195 (210)
Q Consensus       152 ~f~tns~~gi~pV~~I~~~~~~i~~~~~~g~~t~~L~~~~~~~~  195 (210)
                      +|+|||++||+||.+|+  ++.+    .+||++++|+++|++..
T Consensus       251 vfltns~~gi~pV~~id--~~~~----~~~~~~~~l~~~~~~~~  288 (292)
T PRK07849        251 VWLVSSVRLAARVHTLD--GRPL----PRDPLADELTELVDAAI  288 (292)
T ss_pred             EEEecCcceEEEEEEEC--CEEC----CCChHHHHHHHHHHHHh
Confidence            99999999999999995  6664    36799999999998754

>TIGR01121 D_amino_aminoT D-amino acid aminotransferase

Probab=100.00  E-value=5.2e-39  Score=274.78  Aligned_cols=183  Identities=23%  Similarity=0.240  Sum_probs=155.7

Q ss_pred             eEEEEEEecCCCcCcCCC---CCcEEEEEEEecCCC---cCCceEEEEEeeeeecCCCCCCCCccccChHHHHHHHHHHH
Q 028343            2 YIRPLLMGSGPVLGVAPA---SEYTFITYASPVGNY---HKGLLNLIVEEKFRRAIPGGTGGVKAVTNYAIIYKPIAEAK   75 (210)
Q Consensus         2 yiR~~~~g~~~~~g~~~~---~~~~~~i~~~p~~~~---~~~g~~~~~~~~~~r~~~~~l~~~K~~~~y~~~~~a~~ea~   75 (210)
                      +||+.++++.+.+|+.++   ..+.++++..|++..   +.+|+++..+.+. |   ...+++|++ ||+.+++++++|+
T Consensus        85 ~irl~~~rg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~~~~~-~---~~~~~~K~~-nyl~~vla~~eA~  159 (276)
T TIGR01121        85 HVYFQVTRGVAPRNHQFPAGTVKPVITAYTKEVPRPEENLEKGVKAITVEDI-R---WLRCDIKSL-NLLGNVLAKQEAH  159 (276)
T ss_pred             EEEEEEEcCCCCcCCCCCCCCCCcEEEEEEecccCChhHHhcCeEEEEecCC-C---ccCCCcchh-hhHHHHHHHHHHH
Confidence            789999877656666543   246777777776532   2378887655332 2   234689986 9999999999999


Q ss_pred             HCCCCeEEEEcCCCcEEEeCceEEEEEECCEEEccCCCCCCcccchHHHHHHHHHHcCCcEEEEecCHHHHhhhhhhhhc
Q 028343           76 AKGFTDVLFLNAEKYIEEVSTSNIFLVKGNEISTPPTSGTILPGITRKSIIEITHVLGYQVKERAIPVEELFDAEEVFCT  155 (210)
Q Consensus        76 ~~g~deal~ld~~g~v~E~~~sNlf~~~~~~l~TP~l~~~~L~GitR~~vl~~a~~~gi~v~e~~i~~~el~~ade~f~t  155 (210)
                      ++|+||+||++ +|+|+|++++|+|++++|+|+|||++.++|+||||+.++++|+++|++|+|++++++||.+|||+|+|
T Consensus       160 ~~g~de~l~~~-~g~v~E~~~sNif~v~~~~~~TP~~~~~~L~GitR~~vl~~a~~~g~~v~e~~i~~~el~~ade~flt  238 (276)
T TIGR01121       160 EKGAYEAILHR-GGTVTEGSSSNVYGIKDGVLYTHPANNLILNGITRMVILACAEENGIPVKEEPFTKEELLNADEVFVS  238 (276)
T ss_pred             HcCCCEEEEec-CCeEEecCceeEEEEECCEEEeCCCcCCCCcCHHHHHHHHHHHHCCCeEEEEeCCHHHHhcCCEEEEe
Confidence            99999999996 79999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ccccceEEEEEEEecCeEEeecCCccHHHHHHHHHHHH
Q 028343          156 GTAVGVNSVNSITYQDERIEYKRGAGTVGQKLYEMVTG  193 (210)
Q Consensus       156 ns~~gi~pV~~I~~~~~~i~~~~~~g~~t~~L~~~~~~  193 (210)
                      ||++||+||++|+  ++.++ .+..||++++|+++|.+
T Consensus       239 ns~~gi~PV~~id--~~~~~-~~~~g~~~~~L~~~~~~  273 (276)
T TIGR01121       239 STTAEITPVIEID--GQQIG-DGKPGPWTRQLQKAFEE  273 (276)
T ss_pred             cCcccEEEEEEEC--CEECC-CCCCCHHHHHHHHHHHH
Confidence            9999999999995  66642 45679999999999975

Specificity is broad for various D-amino acids, and differs among members of the family; the family is designated equivalog, but with this caveat attached.

>PF01063 Aminotran_4: Aminotransferase class IV; InterPro: IPR001544 Aminotransferases share certain mechanistic features with other pyridoxal-phosphate dependent enzymes, such as the covalent binding of the pyridoxal-phosphate group to a lysine residue

Probab=100.00  E-value=2.9e-38  Score=262.23  Aligned_cols=181  Identities=32%  Similarity=0.453  Sum_probs=140.8

Q ss_pred             eEEEEEEecCCCcCcCCCCCcEEEEEEEecCCCcCCceEEEEEeeeeecCCC-----CCCCCccccChHHHHH-HHHHHH
Q 028343            2 YIRPLLMGSGPVLGVAPASEYTFITYASPVGNYHKGLLNLIVEEKFRRAIPG-----GTGGVKAVTNYAIIYK-PIAEAK   75 (210)
Q Consensus         2 yiR~~~~g~~~~~g~~~~~~~~~~i~~~p~~~~~~~g~~~~~~~~~~r~~~~-----~l~~~K~~~~y~~~~~-a~~ea~   75 (210)
                      |||++++++.+..+..++..+............  .+..........+..+.     .++++|++ ||+.+.+ +.++|+
T Consensus        45 ~ir~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~Kt~-~~~~~~~~~~~~a~  121 (231)
T PF01063_consen   45 YIRITVTRGGGPLGGSPPENSAPPPFSIAPPRR--PPPPLVGSVGVRRASPPLPRPNPLPRHKTT-NRLANVLAALRAAR  121 (231)
T ss_dssp             EEEEEEEETSSSSSSSECSEEEEEEEEEETCHH--HHEEEEEECSEECETTTSE-TTTSTTS-BS-HHHHHHHHHHHHHH
T ss_pred             EEEEEEEcCCCCcCccCcccccccccccccccc--CCcceeeeeeEEeccccccccCCCCCeeEC-CcchhhHHHHHHHH
Confidence            899999988777777665433322222222211  12222111122232222     47899997 7777776 777777


Q ss_pred             HCCCCeEEEEcCCCcEEEeCceEEEEEECCEEEccCCCCCCcccchHHHHHHHHHHcCCcEEEEecCHHHHhhhhhhhhc
Q 028343           76 AKGFTDVLFLNAEKYIEEVSTSNIFLVKGNEISTPPTSGTILPGITRKSIIEITHVLGYQVKERAIPVEELFDAEEVFCT  155 (210)
Q Consensus        76 ~~g~deal~ld~~g~v~E~~~sNlf~~~~~~l~TP~l~~~~L~GitR~~vl~~a~~~gi~v~e~~i~~~el~~ade~f~t  155 (210)
                      ++|+||+|++|++|+|+|++++|||+++||+|+||+++.|+|+||||+.++++++++|++++|++++++||.+|||+|+|
T Consensus       122 ~~g~de~ll~d~~G~v~E~~~sNif~~~~~~~~TP~~~~giL~Gitr~~ll~~~~~~g~~v~e~~i~~~~L~~ade~fl~  201 (231)
T PF01063_consen  122 EKGADEALLLDEDGNVTEGSTSNIFFVKDGTLYTPPLDSGILPGITRQLLLELAKELGIPVEERPITLDDLQQADEVFLT  201 (231)
T ss_dssp             HTTSSEEEEEETTSBEEEESSSEEEEEETTEEEEESGSSSSB--HHHHHHHHHHHHTTSEEEEE-BBHHHHHTHSEEEEE
T ss_pred             hcCcchhheecCCCCcCCCCCcccccccCCEEEcCChhhhhccHHHHHHHHHHHHhCCCCcEEEEeCHHHhhhhhheEEe
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ccccceEEEEEEEecCeEEeecCCccHHHHHHHHHH
Q 028343          156 GTAVGVNSVNSITYQDERIEYKRGAGTVGQKLYEMV  191 (210)
Q Consensus       156 ns~~gi~pV~~I~~~~~~i~~~~~~g~~t~~L~~~~  191 (210)
                      ||++||+||.+|+  ++.+  .  .||++++|+++|
T Consensus       202 ns~~gi~pV~~i~--~~~~--~--~~p~~~~L~~~~  231 (231)
T PF01063_consen  202 NSLRGIRPVKSID--GRSF--G--PGPITRRLQEAY  231 (231)
T ss_dssp             ETTTEEEEEEEET--TEES--T--THHHHHHHHHHH
T ss_pred             cchhhEEEEEEEC--CEEC--C--CCHHHHHHHHhC
Confidence            9999999999994  7663  3  899999999987

On the basis of sequence similarity, these various enzymes can be grouped [] into subfamilies. One of these, called class-IV, currently consists of proteins of about 270 to 415 amino-acid residues that share a few regions of sequence similarity. Surprisingly, the best conserved region does not include the lysine residue to which the pyridoxal-phosphate group is known to be attached, in ilvE, but is located some 40 residues at the C terminus side of the pyridoxal-phosphate-lysine. The D-amino acid transferases (D-AAT), which are among the members of this entry, are required by bacteria to catalyse the synthesis of D-glutamic acid and D-alanine, which are essential constituents of bacterial cell wall and are the building block for other D-amino acids. Despite the difference in the structure of the substrates, D-AATs and L-ATTs have strong similarity [, ]. ; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 1EKV_A 2HGX_A 1EKP_A 1KTA_B 1KT8_B 2A1H_B 2HDK_A 2HGW_B 1EKF_B 2HG8_A ....

>PRK07546 hypothetical protein; Provisional

Probab=100.00  E-value=7.5e-34  Score=233.93  Aligned_cols=148  Identities=21%  Similarity=0.311  Sum_probs=128.2

Q ss_pred             eEEEEEEecCCCcCcCCCCCcEEEEEEEecCCCc-CCceEEEEEeeeeecCCCCCCCCccccChHHHHHHHHHHHHCCCC
Q 028343            2 YIRPLLMGSGPVLGVAPASEYTFITYASPVGNYH-KGLLNLIVEEKFRRAIPGGTGGVKAVTNYAIIYKPIAEAKAKGFT   80 (210)
Q Consensus         2 yiR~~~~g~~~~~g~~~~~~~~~~i~~~p~~~~~-~~g~~~~~~~~~~r~~~~~l~~~K~~~~y~~~~~a~~ea~~~g~d   80 (210)
                      +||+++++++           .+.+.+.|+++.+ ..++++.++ ..++..++.+.++||+ ||+.+++++++|+++|+|
T Consensus        60 ~vrl~~~~~g-----------~~~i~~~p~~~~~~~~~~~l~~~-~~~~~~~~~~~~~Kt~-nr~~~v~a~~~a~~~g~d  126 (209)
T PRK07546         60 RLRLTLARDG-----------RLTVETAPLPPLPPDTVWRVAIA-RTRLDSADPLLRYKTT-RRAAYDAARAELPPAEAD  126 (209)
T ss_pred             EEEEEEcCCC-----------CEEEEEecCCCCCCCCcEEEEEc-CcccCCCCcchhcccC-ChHHHHHHHHHHhhCCCC
Confidence            5788776542           3567788876433 256777766 3456556677899996 999999999999999999


Q ss_pred             eEEEEcCCCcEEEeCceEEEEEECCEEE-ccCCCCCCcccchHHHHHHHHHHcCCcEEEEecCHHHHhhhhhhhhccccc
Q 028343           81 DVLFLNAEKYIEEVSTSNIFLVKGNEIS-TPPTSGTILPGITRKSIIEITHVLGYQVKERAIPVEELFDAEEVFCTGTAV  159 (210)
Q Consensus        81 eal~ld~~g~v~E~~~sNlf~~~~~~l~-TP~l~~~~L~GitR~~vl~~a~~~gi~v~e~~i~~~el~~ade~f~tns~~  159 (210)
                      |+||+|++|+|+||+++|+||+++|+|+ ||+++.|+|+||||+.+++.     ++++|+.++++||.+|||+|+|||++
T Consensus       127 e~l~l~~~G~v~E~s~~Ni~~~~~~~~~~TP~~~~g~L~Gi~R~~ll~~-----~~v~e~~i~~~~L~~adevfl~NSl~  201 (209)
T PRK07546        127 EVILLNERGEVCEGTITNVFLDRGGGMLTTPPLSCGLLPGVLRAELLDA-----GRAREAVLTVDDLKSARAIWVGNSLR  201 (209)
T ss_pred             EEEEECCCCcEEEcCceeEEEEECCEEEECCCCcCCCCccHHHHHHHhh-----CCeEEEEcCHHHHhhCCEEEEEccce
Confidence            9999999999999999999999999999 99999999999999999985     58999999999999999999999999


Q ss_pred             ceEEEEEE
Q 028343          160 GVNSVNSI  167 (210)
Q Consensus       160 gi~pV~~I  167 (210)
                      |++||..|
T Consensus       202 gv~pV~~~  209 (209)
T PRK07546        202 GLIRAELI  209 (209)
T ss_pred             eEEEEEEC
Confidence            99999864

>PRK07101 hypothetical protein; Provisional

Probab=99.92  E-value=3e-24  Score=174.13  Aligned_cols=107  Identities=19%  Similarity=0.297  Sum_probs=88.3

Q ss_pred             CceEEEEEeeeeecCCCCCCCCccccChHHHHHHHHHHHHCCCCeEEEEcCCCcEEEeCceEEEEEECCEEEccCCCCCC
Q 028343           37 GLLNLIVEEKFRRAIPGGTGGVKAVTNYAIIYKPIAEAKAKGFTDVLFLNAEKYIEEVSTSNIFLVKGNEISTPPTSGTI  116 (210)
Q Consensus        37 ~g~~~~~~~~~~r~~~~~l~~~K~~~~y~~~~~a~~ea~~~g~deal~ld~~g~v~E~~~sNlf~~~~~~l~TP~l~~~~  116 (210)
                      +++++..+++       ....+|++ ++.  .+....|++.|+||+|++| +|+|+||+++|||+++||+|+|||  .++
T Consensus        81 ~~~~~~~~~~-------~~~~~Kt~-~r~--~~~~~~a~~~g~de~l~~~-~G~v~E~~~sNi~~~~~~~~~TP~--~~~  147 (187)
T PRK07101         81 RSFQPVYCDD-------IDYSLKYT-DRS--ALNELFAQKGECDEIIIIK-NGLVTDTSIGNLAFFDGKQWFTPK--KPL  147 (187)
T ss_pred             CceEEEecCC-------cccccccC-CHH--HHHHHHHHhCCCCEEEEEc-CCEEEEccceEEEEEECCEEEcCC--CCC
Confidence            5666654322       23379997 442  2233345668999999998 799999999999999999999999  489


Q ss_pred             cccchHHHHHHHHHHcCCcEEEEecCHHHHhhhhhhhhcccccce
Q 028343          117 LPGITRKSIIEITHVLGYQVKERAIPVEELFDAEEVFCTGTAVGV  161 (210)
Q Consensus       117 L~GitR~~vl~~a~~~gi~v~e~~i~~~el~~ade~f~tns~~gi  161 (210)
                      |+||||+.+++.    | +++|+.++++||.+|||+|+|||++|+
T Consensus       148 L~Gi~R~~ll~~----~-~v~e~~i~~~~L~~ad~~~~~nsl~G~  187 (187)
T PRK07101        148 LKGTQRARLLDE----G-KIKEKDITVEDLLQYEEIRLINAMNGF  187 (187)
T ss_pred             ccHHHHHHHHcc----C-CEEEEecCHHHHhcCCEEEEEecccCC
Confidence            999999999983    5 899999999999999999999999884

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	210
4dqn_A	345	Crystal Structure Of The Branched-Chain Aminotransf		3e-32
3ht5_A	368	Crystal Structure Of Ilve A Branched Chain Amino Ac		3e-31
3dtf_A	372	Structural Analysis Of Mycobacterial Branched Chain		1e-29
3jz6_A	373	Crystal Structure Of Mycobacterium Smegmatis Branch		1e-29
3uyy_A	358	Crystal Structures Of Branched-Chain Aminotransfera		2e-26
2cog_A	386	Crystal Structure Of Oxidized Human Cytosolic Branc		2e-24
2abj_A	366	Crystal Structure Of Human Branched Chain Amino Aci		2e-23
1a3g_A	308	Branched-chain Amino Acid Aminotransferase From Esc		3e-21
1i1k_A	309	Crystal Structure Of Eschelichia Coli Branched-chai		3e-21
2hgw_A	365	Crystal Structure Of Cys318ala Mutant Of Human Mito		6e-21
1ekf_A	365	Crystallographic Structure Of Human Branched Chain		6e-21
2hhf_B	365	X-ray Crystal Structure Of Oxidized Human Mitochond		6e-21
2hg8_A	365	Crystal Structure Of Cys315ala Mutant Of Human Mito		6e-21
2hdk_A	365	Crystal Structure Of Cys315ala-Cys318ala Mutant Of		7e-21
2hhf_A	365	X-ray Crystal Structure Of Oxidized Human Mitochond		5e-20
1wrv_A	308	Crystal Structure Of T.Th.Hb8 Branched-Chain Amino		5e-13
3u0g_A	328	Crystal Structure Of Branched-Chain Amino Acid Amin		1e-11
3csw_A	285	Crystal Structure Of A Putative Branched-Chain Amin		1e-10
3lul_A	272	Crystal Structure Of Putative 4-Amino-4-Deoxychoris		1e-10
3sno_A	315	Crystal Structure Of A Hypothetical Aminotransferas		1e-09
1daa_A	282	Crystallographic Structure Of D-Amino Acid Aminotra		7e-05
3daa_A	277	Crystallographic Structure Of D-Amino Acid Aminotra		7e-05
3lqs_A	280	Complex Structure Of D-Amino Acid Aminotransferase		7e-05
1et0_A	269	Crystal Structure Of Aminodeoxychorismate Lyase Fro		9e-05
5daa_A	277	E177k Mutant Of D-Amino Acid Aminotransferase Compl		2e-04
1g2w_A	282	E177s Mutant Of The Pyridoxal-5'-phosphate Enzyme D		3e-04
1a0g_A	282	L201a Mutant Of D-Amino Acid Aminotransferase Compl		4e-04

>pdb|4DQN|A Chain A, Crystal Structure Of The Branched-Chain Aminotransferase From Streptococcus Mutans Length = 345

Iteration: 1
 Score =  134 bits (337), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 83/219 (37%), Positives = 124/219 (56%), Gaps = 10/219 (4%)
Query: 1   MYIRPLLMGSGPVLGVAPASEYTFITYASPVGNYHKGLL---NLIVEEKFRRAIPGGTGG 57
           +Y+RPLL+G G V+GV PA EY F  +A PVGNY KG L   N ++++ + RA P GTG 
Sbjct: 127 LYLRPLLIGVGDVIGVHPADEYIFTIFAMPVGNYFKGGLAPTNFLIQDDYDRAAPHGTGA 186
Query: 58  VKAVTNYAIIYKPIAEAKAKGFTDVLFLNAEKY--IEEVSTSNIF-LVKGNEISTPPTSG 114
            K   NYA    P   A  + F+DV++L+   +  IEEV ++N F + K NE  T P S 
Sbjct: 187 AKVGGNYAASLLPGKVAHERQFSDVIYLDPATHTKIEEVGSANFFGITKDNEFIT-PLSP 245
Query: 115 TILPGITRKSIIEIT-HVLGYQVKERAIPVEELFDAEEVFCTGTAVGVNSVNSITYQDE- 172
           +ILP +T+ S++ +  H  G +  E  + V+EL    E    GTA  ++ +  + + D+ 
Sbjct: 246 SILPSVTKYSLLYLAEHRFGMKAIEGDVCVDELDKFVEAGACGTAAVISPIGGVQHGDDF 305
Query: 173 RIEYKRG-AGTVGQKLYEMVTGIQTGRIEDKMGWTVELD 210
            + Y     G V  KLY+ +TGIQ G ++   GW  ++D
Sbjct: 306 HVFYSETEVGPVTHKLYDELTGIQFGDVKAPEGWIYKVD 344

>pdb|3HT5|A Chain A, Crystal Structure Of Ilve A Branched Chain Amino Acid Transaminase From Mycobacterium Tuberculosis Length = 368

Iteration: 1
 Score =  131 bits (329), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 82/225 (36%), Positives = 118/225 (52%), Gaps = 16/225 (7%)
Query: 1   MYIRPLLMGSGPVLGVAPASEYTFITYASPVGNYHKG---LLNLIVEEKFRRAIPGGTGG 57
           +Y+RP +  + P LGV PA++Y ++  ASP G Y KG    +++ V  ++ RA PGGTG 
Sbjct: 143 LYLRPFIFATEPGLGVRPATQYRYLLIASPAGAYFKGGIAPVSVWVSTEYVRACPGGTGA 202
Query: 58  VKAVTNYAIIYKPIAEAKAKGFTDVLFLNA--EKYIEEVSTSNIFLVKGN----EISTPP 111
            K   NYA      AEA   G   V++L+A   +YIEE+   NIF V G+     + TP 
Sbjct: 203 AKFGGNYAASLLAQAEAAENGCDQVVWLDAVERRYIEEMGGMNIFFVLGSGGSARLVTPE 262
Query: 112 TSGTILPGITRKSIIEITHVLGYQVKERAIPVEELF------DAEEVFCTGTAVGVNSVN 165
            SG++LPGITR S++++    G+ V+ER I ++E        +  EVF  GTA  +  V 
Sbjct: 263 LSGSLLPGITRDSLLQLAIDAGFAVEERRIDIDEWQKKAAAGEITEVFACGTAAVITPVA 322
Query: 166 SITYQDERIEYKRGA-GTVGQKLYEMVTGIQTGRIEDKMGWTVEL 209
            + +         G  G V   L + +TGIQ G   D  GW   L
Sbjct: 323 RVRHGASEFRIADGQPGEVTMALRDTLTGIQRGTFADTHGWMARL 367

>pdb|3DTF|A Chain A, Structural Analysis Of Mycobacterial Branched Chain Aminotransferase- Implications For Inhibitor Design Length = 372

Iteration: 1
 Score =  125 bits (314), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 79/226 (34%), Positives = 122/226 (53%), Gaps = 16/226 (7%)
Query: 1   MYIRPLLMGSGPVLGVAPASEYTFITYASPVGNYHKG---LLNLIVEEKFRRAIPGGTGG 57
           +Y+RP ++ + P LGV P++EY ++  ASP G Y KG    +++ +  ++ RA PGGTG 
Sbjct: 147 LYLRPFVIATEPGLGVRPSNEYRYLLIASPAGAYFKGGIKPVSVWLSHEYVRASPGGTGA 206
Query: 58  VKAVTNYAIIYKPIAEAKAKGFTDVLFLNA--EKYIEEVSTSNIFLVKGN----EISTPP 111
            K   NYA      A+A   G   V++L+A   +Y+EE+   N+F V G+     + TP 
Sbjct: 207 AKFGGNYAASLLAQAQAAEMGCDQVVWLDAIERRYVEEMGGMNLFFVFGSGGSARLVTPE 266
Query: 112 TSGTILPGITRKSIIEITHVLGYQVKERAIPVEELF------DAEEVFCTGTAVGVNSVN 165
            SG++LPGITR S++++    G+ V+ER I V+E        +  EVF  GTA  +  V+
Sbjct: 267 LSGSLLPGITRDSLLQLATDAGFAVEERKIDVDEWQKKAGAGEITEVFACGTAAVITPVS 326
Query: 166 SITYQDERIEYKRGA-GTVGQKLYEMVTGIQTGRIEDKMGWTVELD 210
            + + D       G  G +   L + +TGIQ G   D  GW   L+
Sbjct: 327 HVKHHDGEFTIADGQPGEITMALRDTLTGIQRGTFADTHGWMARLN 372

>pdb|3JZ6|A Chain A, Crystal Structure Of Mycobacterium Smegmatis Branched Chain Aminotransferase In Complex With Pyridoxal-5'-Phosphate At 1.9 Angstrom. Length = 373

Iteration: 1
 Score =  125 bits (314), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 79/226 (34%), Positives = 122/226 (53%), Gaps = 16/226 (7%)
Query: 1   MYIRPLLMGSGPVLGVAPASEYTFITYASPVGNYHKG---LLNLIVEEKFRRAIPGGTGG 57
           +Y+RP ++ + P LGV P++EY ++  ASP G Y KG    +++ +  ++ RA PGGTG 
Sbjct: 148 LYLRPFVIATEPGLGVRPSNEYRYLLIASPAGAYFKGGIKPVSVWLSHEYVRASPGGTGA 207
Query: 58  VKAVTNYAIIYKPIAEAKAKGFTDVLFLNA--EKYIEEVSTSNIFLVKGN----EISTPP 111
            K   NYA      A+A   G   V++L+A   +Y+EE+   N+F V G+     + TP 
Sbjct: 208 AKFGGNYAASLLAQAQAAEMGCDQVVWLDAIERRYVEEMGGMNLFFVFGSGGSARLVTPE 267
Query: 112 TSGTILPGITRKSIIEITHVLGYQVKERAIPVEELF------DAEEVFCTGTAVGVNSVN 165
            SG++LPGITR S++++    G+ V+ER I V+E        +  EVF  GTA  +  V+
Sbjct: 268 LSGSLLPGITRDSLLQLATDAGFAVEERKIDVDEWQKKAGAGEITEVFACGTAAVITPVS 327
Query: 166 SITYQDERIEYKRGA-GTVGQKLYEMVTGIQTGRIEDKMGWTVELD 210
            + + D       G  G +   L + +TGIQ G   D  GW   L+
Sbjct: 328 HVKHHDGEFTIADGQPGEITMALRDTLTGIQRGTFADTHGWMARLN 373

>pdb|3UYY|A Chain A, Crystal Structures Of Branched-Chain Aminotransferase From Deinococcus Radiodurans Complexes With Alpha-Ketoisocaproate And L-Glutamate Suggest Its Radio-Resistance For Catalysis Length = 358

Iteration: 1
 Score =  115 bits (287), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 79/219 (36%), Positives = 116/219 (52%), Gaps = 12/219 (5%)
Query: 1   MYIRPLLMGSGPVLGVAPASEYTFITYASPVGNYHKGLL---NLIVEEKFRRAIPGGTGG 57
           +Y+RP ++G G  +GV  A E+ F  +  PVG Y KG L   N I  + + RA P GTG 
Sbjct: 142 LYLRPFVIGVGDNIGVRTAPEFIFSVFCVPVGPYFKGGLTPTNFITSD-YDRAAPHGTGA 200
Query: 58  VKAVTNYAIIYKPIAEAKAKGFTDVLFLNAEKY--IEEVSTSNIFLV--KGNEISTPPTS 113
            K   NYA    P  EAK + F DV++L+   +  IEE   +N F +   G +  T P S
Sbjct: 201 AKVGGNYAASLLPGYEAKKRDFADVIYLDPATHTTIEEAGAANFFAITQDGQKFVT-PQS 259
Query: 114 GTILPGITRKSIIEIT-HVLGYQVKERAIPVEELFDAEEVFCTGTAVGVNSVNSITYQDE 172
            +ILP IT+ S++ +  H LG +V+E  I ++EL    E    GTA  +  +  I + D+
Sbjct: 260 PSILPSITKYSLLWLAEHRLGLEVEEGDIRIDELGKFSEAGACGTAAVITPIGGIQHGDD 319
Query: 173 -RIEYKRG-AGTVGQKLYEMVTGIQTGRIEDKMGWTVEL 209
             + Y     G V ++LY+ + GIQ G  E   GW V++
Sbjct: 320 FHVFYSESEPGPVTRRLYDELVGIQYGDKEAPEGWIVKV 358

>pdb|2COG|A Chain A, Crystal Structure Of Oxidized Human Cytosolic Branched-Chain Aminotransferase Complexed With 4-Methylvalerate Length = 386

Iteration: 1
 Score =  108 bits (270), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 80/228 (35%), Positives = 113/228 (49%), Gaps = 21/228 (9%)
Query: 1   MYIRPLLMGSGPVLGVAPASEYTFITYASPVGNY-HKGLLN---LIVEEKFRRAIPGGTG 56
           +YIRP  +G+ P LGV   ++       SPVG Y   G  N   L    K+ RA  GGTG
Sbjct: 160 LYIRPTFIGTEPSLGVKKPTKALLFVLLSPVGPYFSSGTFNPVSLWANPKYVRAWKGGTG 219
Query: 57  GVKAVTNYAIIYKPIAEAKAKGFTDVLFLNAEKY-IEEVSTSNIFLVKGNE-----ISTP 110
             K   NY        EA   G   VL+L  E + I EV T N+FL   NE     ++TP
Sbjct: 220 DCKMGGNYGSSLFAQCEAVDNGCQQVLWLYGEDHQITEVGTMNLFLYWINEDGEEELATP 279
Query: 111 PTSGTILPGITRKSIIEITHVLG-YQVKERAIPVEELFDA------EEVFCTGTAVGVNS 163
           P  G ILPG+TR+ I+++ H  G ++V ER + +++L  A       E+F +GTA  V  
Sbjct: 280 PLDGIILPGVTRRCILDLAHQWGEFKVSERYLTMDDLTTALEGNRVREMFGSGTACVVCP 339
Query: 164 VNSITYQDERIEYK--RGAGTVGQKLYEMVTGIQTGRIEDKMGWTVEL 209
           V+ I Y+ E I          +  ++   +T IQ GR  ++  WT+ L
Sbjct: 340 VSDILYKGETIHIPTMENGPKLASRILSKLTDIQYGR--EERDWTIVL 385

>pdb|2ABJ|A Chain A, Crystal Structure Of Human Branched Chain Amino Acid Transaminase In A Complex With An Inhibitor, C16h10n2o4f3scl, And Pyridoxal 5' Phosphate. Length = 366

Iteration: 1
 Score =  105 bits (262), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 79/228 (34%), Positives = 110/228 (48%), Gaps = 21/228 (9%)
Query: 1   MYIRPLLMGSGPVLGVAPASEYTFITYASPVGNY-HKGLLN---LIVEEKFRRAIPGGTG 56
           +YIRP  +G+ P LGV   ++       SPVG Y   G  N   L    K+ RA  GGTG
Sbjct: 140 LYIRPAFIGTEPSLGVKKPTKALLFVLLSPVGPYFSSGTFNPVSLWANPKYVRAWKGGTG 199
Query: 57  GVKAVTNYAIIYKPIAEAKAKGFTDVLFLNAEKY-IEEVSTSNIFLVKGNE-----ISTP 110
             K   NY        E    G   VL+L    + I EV T N+FL   NE     ++TP
Sbjct: 200 DCKMGGNYGSSLFAQCEDVDNGCQQVLWLYGRDHQITEVGTMNLFLYWINEDGEEELATP 259
Query: 111 PTSGTILPGITRKSIIEITHVLG-YQVKERAIPVEELFDA------EEVFCTGTAVGVNS 163
           P  G ILPG+TR+ I+++ H  G ++V ER + +++L  A       E+F +GTA  V  
Sbjct: 260 PLDGIILPGVTRRCILDLAHQWGEFKVSERYLTMDDLTTALEGNRVREMFSSGTACVVCP 319
Query: 164 VNSITYQDERIEYK--RGAGTVGQKLYEMVTGIQTGRIEDKMGWTVEL 209
           V+ I Y+ E I          +  ++   +T IQ GR E    WT+ L
Sbjct: 320 VSDILYKGETIHIPTMENGPKLASRILSKLTDIQYGREESD--WTIVL 365

>pdb|1A3G|A Chain A, Branched-chain Amino Acid Aminotransferase From Escherichia Coli Length = 308

Iteration: 1
 Score = 98.2 bits (243), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 71/219 (32%), Positives = 113/219 (51%), Gaps = 16/219 (7%)
Query: 2   YIRPLLMGSGPVLGVAPASEYT--FITYASPVGNY------HKGLLNLIVEEKFRRAIPG 53
           YIRPL+      +GV P + Y+   I  A P G Y       +G+  ++    + RA P 
Sbjct: 95  YIRPLIFVGDVGMGVNPPAGYSTDVIIAAFPWGAYLGAEALEQGIDAMV--SSWNRAAPN 152
Query: 54  GT-GGVKAVTNYAIIYKPIAEAKAKGFTDVLFLNAEKYIEEVSTSNIFLVKGNEISTPPT 112
                 KA  NY       +EA+  G+ + + L+   YI E +  N+F VK   + TPP 
Sbjct: 153 TIPTAAKAGGNYLSSLLVGSEARRHGYQEGIALDVNGYISEGAGENLFEVKDGVLFTPPF 212
Query: 113 SGTILPGITRKSIIEITHVLGYQVKERAIPVEELFDAEEVFCTGTAVGVNSVNSITYQDE 172
           + + LPGITR +II++   LG +V+E+ +  E L+ A+EVF +GTA  +  V S+    +
Sbjct: 213 TSSALPGITRDAIIKLAKELGIEVREQVLSRESLYLADEVFMSGTAAEITPVRSV----D 268
Query: 173 RIEYKRG-AGTVGQKLYEMVTGIQTGRIEDKMGWTVELD 210
            I+   G  G V +++ +   G+ TG  EDK GW  +++
Sbjct: 269 GIQVGEGRCGPVTKRIQQAFFGLFTGETEDKWGWLDQVN 307

>pdb|1I1K|A Chain A, Crystal Structure Of Eschelichia Coli Branched-chain Amino Acid Aminotransferase. Length = 309

Iteration: 1
 Score = 98.2 bits (243), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 71/219 (32%), Positives = 113/219 (51%), Gaps = 16/219 (7%)
Query: 2   YIRPLLMGSGPVLGVAPASEYT--FITYASPVGNY------HKGLLNLIVEEKFRRAIPG 53
           YIRPL+      +GV P + Y+   I  A P G Y       +G+  ++    + RA P 
Sbjct: 96  YIRPLIFVGDVGMGVNPPAGYSTDVIIAAFPWGAYLGAEALEQGIDAMV--SSWNRAAPN 153
Query: 54  GT-GGVKAVTNYAIIYKPIAEAKAKGFTDVLFLNAEKYIEEVSTSNIFLVKGNEISTPPT 112
                 KA  NY       +EA+  G+ + + L+   YI E +  N+F VK   + TPP 
Sbjct: 154 TIPTAAKAGGNYLSSLLVGSEARRHGYQEGIALDVNGYISEGAGENLFEVKDGVLFTPPF 213
Query: 113 SGTILPGITRKSIIEITHVLGYQVKERAIPVEELFDAEEVFCTGTAVGVNSVNSITYQDE 172
           + + LPGITR +II++   LG +V+E+ +  E L+ A+EVF +GTA  +  V S+    +
Sbjct: 214 TSSALPGITRDAIIKLAKELGIEVREQVLSRESLYLADEVFMSGTAAEITPVRSV----D 269
Query: 173 RIEYKRG-AGTVGQKLYEMVTGIQTGRIEDKMGWTVELD 210
            I+   G  G V +++ +   G+ TG  EDK GW  +++
Sbjct: 270 GIQVGEGRCGPVTKRIQQAFFGLFTGETEDKWGWLDQVN 308

>pdb|2HGW|A Chain A, Crystal Structure Of Cys318ala Mutant Of Human Mitochondrial Branched Chain Aminotransferase Length = 365

Iteration: 1
 Score = 97.1 bits (240), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 65/192 (33%), Positives = 98/192 (51%), Gaps = 17/192 (8%)
Query: 1   MYIRPLLMGSGPVLGVAPASEYTFITYASPVGNYHKG----LLNLIVEEKFRRAIPGGTG 56
           +Y+RP+L+G+ P LGV+            PVG Y  G     ++L+ +  F RA  GG G
Sbjct: 140 LYVRPVLIGNEPSLGVSQPRRALLFVILCPVGAYFPGGSVTPVSLLADPAFIRAWVGGVG 199
Query: 57  GVKAVTNYAIIYKPIAEAKAKGFTDVLFL-NAEKYIEEVSTSNIFLVKGNE-----ISTP 110
             K   NY        EA  +G   VL+L   +  + EV T NIF+   +E     + TP
Sbjct: 200 NYKLGGNYGPTVLVQQEALKRGCEQVLWLYGPDHQLTEVGTMNIFVYWTHEDGVLELVTP 259
Query: 111 PTSGTILPGITRKSIIEITHVLG-YQVKERAIPVEELFDA------EEVFCTGTAVGVNS 163
           P +G ILPG+ R+S++++    G ++V ER I +++L  A       EVF +GTA  V  
Sbjct: 260 PLNGVILPGVVRQSLLDMAQTWGEFRVVERTITMKQLLRALEEGRVREVFGSGTACQVAP 319
Query: 164 VNSITYQDERIE 175
           V+ I Y+D  + 
Sbjct: 320 VHRILYKDRNLH 331

>pdb|1EKF|A Chain A, Crystallographic Structure Of Human Branched Chain Amino Acid Aminotransferase (Mitochondrial) Complexed With Pyridoxal-5'- Phosphate At 1.95 Angstroms (Orthorhombic Form) Length = 365

Iteration: 1
 Score = 97.1 bits (240), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 65/192 (33%), Positives = 98/192 (51%), Gaps = 17/192 (8%)
Query: 1   MYIRPLLMGSGPVLGVAPASEYTFITYASPVGNYHKG----LLNLIVEEKFRRAIPGGTG 56
           +Y+RP+L+G+ P LGV+            PVG Y  G     ++L+ +  F RA  GG G
Sbjct: 140 LYVRPVLIGNEPSLGVSQPRRALLFVILCPVGAYFPGGSVTPVSLLADPAFIRAWVGGVG 199
Query: 57  GVKAVTNYAIIYKPIAEAKAKGFTDVLFL-NAEKYIEEVSTSNIFLVKGNE-----ISTP 110
             K   NY        EA  +G   VL+L   +  + EV T NIF+   +E     + TP
Sbjct: 200 NYKLGGNYGPTVLVQQEALKRGCEQVLWLYGPDHQLTEVGTMNIFVYWTHEDGVLELVTP 259
Query: 111 PTSGTILPGITRKSIIEITHVLG-YQVKERAIPVEELFDA------EEVFCTGTAVGVNS 163
           P +G ILPG+ R+S++++    G ++V ER I +++L  A       EVF +GTA  V  
Sbjct: 260 PLNGVILPGVVRQSLLDMAQTWGEFRVVERTITMKQLLRALEEGRVREVFGSGTACQVCP 319
Query: 164 VNSITYQDERIE 175
           V+ I Y+D  + 
Sbjct: 320 VHRILYKDRNLH 331

>pdb|2HHF|B Chain B, X-ray Crystal Structure Of Oxidized Human Mitochondrial Branched Chain Aminotransferase (hbcatm) Length = 365

Iteration: 1
 Score = 97.1 bits (240), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 65/192 (33%), Positives = 98/192 (51%), Gaps = 17/192 (8%)
Query: 1   MYIRPLLMGSGPVLGVAPASEYTFITYASPVGNYHKG----LLNLIVEEKFRRAIPGGTG 56
           +Y+RP+L+G+ P LGV+            PVG Y  G     ++L+ +  F RA  GG G
Sbjct: 140 LYVRPVLIGNEPSLGVSQPRRALLFVILCPVGAYFPGGSVTPVSLLADPAFIRAWVGGVG 199
Query: 57  GVKAVTNYAIIYKPIAEAKAKGFTDVLFL-NAEKYIEEVSTSNIFLVKGNE-----ISTP 110
             K   NY        EA  +G   VL+L   +  + EV T NIF+   +E     + TP
Sbjct: 200 NYKLGGNYGPTVLVQQEALKRGCEQVLWLYGPDHQLTEVGTMNIFVYWTHEDGVLELVTP 259
Query: 111 PTSGTILPGITRKSIIEITHVLG-YQVKERAIPVEELFDA------EEVFCTGTAVGVNS 163
           P +G ILPG+ R+S++++    G ++V ER I +++L  A       EVF +GTA  V  
Sbjct: 260 PLNGVILPGVVRQSLLDMAQTWGEFRVVERTITMKQLLRALEEGRVREVFGSGTACQVCP 319
Query: 164 VNSITYQDERIE 175
           V+ I Y+D  + 
Sbjct: 320 VHRILYKDRNLH 331

>pdb|2HG8|A Chain A, Crystal Structure Of Cys315ala Mutant Of Human Mitochondrial Branched Chain Aminotransferase Complexed With Its Substrate Mimic, N-Methyl Leucine. Length = 365

Iteration: 1
 Score = 97.1 bits (240), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 65/192 (33%), Positives = 98/192 (51%), Gaps = 17/192 (8%)
Query: 1   MYIRPLLMGSGPVLGVAPASEYTFITYASPVGNYHKG----LLNLIVEEKFRRAIPGGTG 56
           +Y+RP+L+G+ P LGV+            PVG Y  G     ++L+ +  F RA  GG G
Sbjct: 140 LYVRPVLIGNEPSLGVSQPRRALLFVILCPVGAYFPGGSVTPVSLLADPAFIRAWVGGVG 199
Query: 57  GVKAVTNYAIIYKPIAEAKAKGFTDVLFL-NAEKYIEEVSTSNIFLVKGNE-----ISTP 110
             K   NY        EA  +G   VL+L   +  + EV T NIF+   +E     + TP
Sbjct: 200 NYKLGGNYGPTVLVQQEALKRGCEQVLWLYGPDHQLTEVGTMNIFVYWTHEDGVLELVTP 259
Query: 111 PTSGTILPGITRKSIIEITHVLG-YQVKERAIPVEELFDA------EEVFCTGTAVGVNS 163
           P +G ILPG+ R+S++++    G ++V ER I +++L  A       EVF +GTA  V  
Sbjct: 260 PLNGVILPGVVRQSLLDMAQTWGEFRVVERTITMKQLLRALEEGRVREVFGSGTAAQVCP 319
Query: 164 VNSITYQDERIE 175
           V+ I Y+D  + 
Sbjct: 320 VHRILYKDRNLH 331

>pdb|2HDK|A Chain A, Crystal Structure Of Cys315ala-Cys318ala Mutant Of Human Mitochondrial Branched Chain Aminotransferase Length = 365

Iteration: 1
 Score = 97.1 bits (240), Expect = 7e-21,   Method: Compositional matrix adjust.
 Identities = 65/192 (33%), Positives = 98/192 (51%), Gaps = 17/192 (8%)
Query: 1   MYIRPLLMGSGPVLGVAPASEYTFITYASPVGNYHKG----LLNLIVEEKFRRAIPGGTG 56
           +Y+RP+L+G+ P LGV+            PVG Y  G     ++L+ +  F RA  GG G
Sbjct: 140 LYVRPVLIGNEPSLGVSQPRRALLFVILCPVGAYFPGGSVTPVSLLADPAFIRAWVGGVG 199
Query: 57  GVKAVTNYAIIYKPIAEAKAKGFTDVLFL-NAEKYIEEVSTSNIFLVKGNE-----ISTP 110
             K   NY        EA  +G   VL+L   +  + EV T NIF+   +E     + TP
Sbjct: 200 NYKLGGNYGPTVLVQQEALKRGCEQVLWLYGPDHQLTEVGTMNIFVYWTHEDGVLELVTP 259
Query: 111 PTSGTILPGITRKSIIEITHVLG-YQVKERAIPVEELFDA------EEVFCTGTAVGVNS 163
           P +G ILPG+ R+S++++    G ++V ER I +++L  A       EVF +GTA  V  
Sbjct: 260 PLNGVILPGVVRQSLLDMAQTWGEFRVVERTITMKQLLRALEEGRVREVFGSGTAAQVAP 319
Query: 164 VNSITYQDERIE 175
           V+ I Y+D  + 
Sbjct: 320 VHRILYKDRNLH 331

>pdb|2HHF|A Chain A, X-ray Crystal Structure Of Oxidized Human Mitochondrial Branched Chain Aminotransferase (hbcatm) Length = 365

Iteration: 1
 Score = 94.4 bits (233), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 64/192 (33%), Positives = 97/192 (50%), Gaps = 17/192 (8%)
Query: 1   MYIRPLLMGSGPVLGVAPASEYTFITYASPVGNYHKG----LLNLIVEEKFRRAIPGGTG 56
           + +RP+L+G+ P LGV+            PVG Y  G     ++L+ +  F RA  GG G
Sbjct: 140 LXVRPVLIGNEPSLGVSQPRRALLFVILCPVGAYFPGGSVTPVSLLADPAFIRAWVGGVG 199
Query: 57  GVKAVTNYAIIYKPIAEAKAKGFTDVLFL-NAEKYIEEVSTSNIFLVKGNE-----ISTP 110
             K   NY        EA  +G   VL+L   +  + EV T NIF+   +E     + TP
Sbjct: 200 NYKLGGNYGPTVLVQQEALKRGCEQVLWLYGPDHQLTEVGTMNIFVYWTHEDGVLELVTP 259
Query: 111 PTSGTILPGITRKSIIEITHVLG-YQVKERAIPVEELFDA------EEVFCTGTAVGVNS 163
           P +G ILPG+ R+S++++    G ++V ER I +++L  A       EVF +GTA  V  
Sbjct: 260 PLNGVILPGVVRQSLLDMAQTWGEFRVVERTITMKQLLRALEEGRVREVFGSGTACQVCP 319
Query: 164 VNSITYQDERIE 175
           V+ I Y+D  + 
Sbjct: 320 VHRILYKDRNLH 331

>pdb|1WRV|A Chain A, Crystal Structure Of T.Th.Hb8 Branched-Chain Amino Acid Aminotransferase Length = 308

Iteration: 1
 Score = 70.9 bits (172), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 73/212 (34%), Positives = 91/212 (42%), Gaps = 13/212 (6%)
Query: 2   YIRPLLMGSGPVLGVAPA--SEYTFITYASPVGNY------HKGLLNLIVEEKFRRAIPG 53
           YIRPL       LGV P   +    +  A   G Y       KG   LI     R     
Sbjct: 95  YIRPLAWMGAKALGVNPLPNNPAEVMVAAWEWGAYLGEEAVRKGA-RLITSSWARFPANV 153
Query: 54  GTGGVKAVTNYAIIYKPIAEAKAKGFTDVLFLNAEKYIEEVSTSNIFLVKGNEISTPPTS 113
             G  K   NY        EA A G  + L L+ E Y+ E S  N+F V+   I     S
Sbjct: 154 MPGKAKVGGNYVNSALAKMEAVAAGADEALLLDEEGYVAEGSGENLFFVRDGVIYALEHS 213
Query: 114 GTILPGITRKSIIEITHVLGYQVKERAIPVEELFDAEEVFCTGTAVGVNSVNSITYQDER 173
              L GITR S+I I   LGY+V+      ++L+ A+EVF TGTA  V  V+ I   D R
Sbjct: 214 -VNLEGITRDSVIRIAKDLGYEVQVVRATRDQLYMADEVFMTGTAAEVTPVSMI---DWR 269
Query: 174 IEYKRGAGTVGQKLYEMVTGIQTGRIEDKMGW 205
              K  AG V  +L E+     TGR  +  GW
Sbjct: 270 PIGKGTAGPVALRLREVYLEAVTGRRPEYEGW 301

>pdb|3U0G|A Chain A, Crystal Structure Of Branched-Chain Amino Acid Aminotransferase From Burkholderia Pseudomallei Length = 328

Iteration: 1
 Score = 65.9 bits (159), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 57/214 (26%), Positives = 93/214 (43%), Gaps = 10/214 (4%)
Query: 2   YIRPLLMGSGPVLGVAPASEYTFITYAS-PVGNY--HKGL---LNLIVEEKFRRAIPGGT 55
           Y+RP++      LGV+       +  A+ P G Y   +GL   + +      R  +    
Sbjct: 119 YLRPIIWIGSEKLGVSAKGNTIHVAIAAWPWGAYLGEEGLAKGIRVKTSSFTRHHVNVSM 178
Query: 56  GGVKAVTNYAIIYKPIAEAKAKGFTDVLFLNAEKYIEEVSTSNIFLVKGNEISTPPTSGT 115
              KA   Y        EA A G+ + L L+ + Y+ E S  N FLV   ++ TP  + +
Sbjct: 179 VRAKASGWYVNSILANQEATADGYDEALLLDVDGYVSEGSGENFFLVNRGKLYTPDLA-S 237
Query: 116 ILPGITRKSIIEITHVLGYQVKERAIPVEELFDAEEVFCTGTAVGVNSVNSITYQDERIE 175
            L GITR ++I +    G +V E+ I  +E++ A+E F TGTA  V  +  +   D R  
Sbjct: 238 CLDGITRDTVITLAKEAGIEVIEKRITRDEVYTADEAFFTGTAAEVTPIREL---DNRTI 294
Query: 176 YKRGAGTVGQKLYEMVTGIQTGRIEDKMGWTVEL 209
                G + +KL      +  G+      W  ++
Sbjct: 295 GGGARGPITEKLQSAFFDVVNGKSAKHADWLTKI 328

>pdb|3CSW|A Chain A, Crystal Structure Of A Putative Branched-Chain Amino Acid Aminotransferase (Tm0831) From Thermotoga Maritima At 2.15 A Resolution Length = 285

Iteration: 1
 Score = 63.2 bits (152), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 36/88 (40%), Positives = 52/88 (59%)
Query: 81  DVLFLNAEKYIEEVSTSNIFLVKGNEISTPPTSGTILPGITRKSIIEITHVLGYQVKERA 140
           DV+ L     + E S SN+FLVK  ++ TP     IL GITR+++I++   L   V+ER 
Sbjct: 164 DVILLGLNGQVCEGSFSNVFLVKEGKLITPSLDSGILDGITRENVIKLAKSLEIPVEERV 223
Query: 141 IPVEELFDAEEVFCTGTAVGVNSVNSIT 168
           + V ELF+A+E F T T+ GV  V  + 
Sbjct: 224 VWVWELFEADEXFLTHTSAGVVPVRRLN 251

>pdb|3LUL|A Chain A, Crystal Structure Of Putative 4-Amino-4-Deoxychorismate Lyase. (Yp_094631.1) From Legionella Pneumophila Subsp. Pneumophila Str. Philadelphia 1 At 1.78 A Resolution Length = 272

Iteration: 1
 Score = 62.8 bits (151), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 33/95 (34%), Positives = 52/95 (54%)
Query: 73  EAKAKGFTDVLFLNAEKYIEEVSTSNIFLVKGNEISTPPTSGTILPGITRKSIIEITHVL 132
           +A A G  D LF N E ++ E + +N+FL++ N + TP     ILPGITR  +I      
Sbjct: 154 QAIAVGADDALFFNTENHVTETTCANLFLIENNILYTPRVEDGILPGITRARLISHCQQH 213
Query: 133 GYQVKERAIPVEELFDAEEVFCTGTAVGVNSVNSI 167
              V+E ++  + + DA+ VF T +  G+  V S+
Sbjct: 214 KXSVQEISLTKKRIEDADAVFLTNSLQGIRRVLSL 248

>pdb|3SNO|A Chain A, Crystal Structure Of A Hypothetical Aminotransferase (Ncgl2491) From Corynebacterium Glutamicum Atcc 13032 Kitasato At 1.60 A Resolution Length = 315

Iteration: 1
 Score = 60.1 bits (144), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 28/86 (32%), Positives = 51/86 (59%), Gaps = 1/86 (1%)
Query: 75  KAKGFTDVLFLNAEKYIEEVSTSNIFLVKGNEISTPPTSGTILPGITRKSIIEITHVLGY 134
           K+ GF DV+F + ++ +E  +TS +   KG++I TP   G ILPG T+ ++       G+
Sbjct: 201 KSNGFDDVIFTDGDRVLEG-ATSTVVSFKGDKIRTPSPGGDILPGTTQAALFAHATEKGW 259
Query: 135 QVKERAIPVEELFDAEEVFCTGTAVG 160
           + KE+ + +++LF A+ V+   +  G
Sbjct: 260 RCKEKDLSIDDLFGADSVWLVSSVRG 285

>pdb|1DAA|A Chain A, Crystallographic Structure Of D-Amino Acid Aminotransferase Complexed With Pyridoxal-5'-Phosphate Length = 282

Iteration: 1
 Score = 43.9 bits (102), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 29/92 (31%), Positives = 44/92 (47%), Gaps = 1/92 (1%)
Query: 73  EAKAKGFTDVLFLNAEKYIEEVSTSNIFLVKGNEISTPPTSGTILPGITRKSIIEITHVL 132
           EA  KG  + + L+    + E S+SN+F +K   + T P +  IL GITR  +I   + +
Sbjct: 158 EAHEKGCYEAI-LHRNNTVTEGSSSNVFGIKDGILYTHPANNMILKGITRDVVIACANEI 216
Query: 133 GYQVKERAIPVEELFDAEEVFCTGTAVGVNSV 164
              VKE      E    +E+F T T   +  V
Sbjct: 217 NMPVKEIPFTTHEALKMDELFVTSTTSEITPV 248

>pdb|3DAA|A Chain A, Crystallographic Structure Of D-Amino Acid Aminotransferase Inactivated By Pyridoxyl-D-Alanine Length = 277

Iteration: 1
 Score = 43.9 bits (102), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 29/92 (31%), Positives = 44/92 (47%), Gaps = 1/92 (1%)
Query: 73  EAKAKGFTDVLFLNAEKYIEEVSTSNIFLVKGNEISTPPTSGTILPGITRKSIIEITHVL 132
           EA  KG  + + L+    + E S+SN+F +K   + T P +  IL GITR  +I   + +
Sbjct: 158 EAHEKGCYEAI-LHRNNTVTEGSSSNVFGIKDGILYTHPANNMILKGITRDVVIACANEI 216
Query: 133 GYQVKERAIPVEELFDAEEVFCTGTAVGVNSV 164
              VKE      E    +E+F T T   +  V
Sbjct: 217 NMPVKEIPFTTHEALKMDELFVTSTTSEITPV 248

>pdb|3LQS|A Chain A, Complex Structure Of D-Amino Acid Aminotransferase And 4-Amino-4,5- Dihydro-Thiophenecarboxylic Acid (Adta) Length = 280

Iteration: 1
 Score = 43.5 bits (101), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 29/92 (31%), Positives = 44/92 (47%), Gaps = 1/92 (1%)
Query: 73  EAKAKGFTDVLFLNAEKYIEEVSTSNIFLVKGNEISTPPTSGTILPGITRKSIIEITHVL 132
           EA  KG  + + L+    + E S+SN+F +K   + T P +  IL GITR  +I   + +
Sbjct: 158 EAHEKGCYEAI-LHRNNTVTEGSSSNVFGIKDGILYTHPANNMILKGITRDVVIACANEI 216
Query: 133 GYQVKERAIPVEELFDAEEVFCTGTAVGVNSV 164
              VKE      E    +E+F T T   +  V
Sbjct: 217 NMPVKEIPFTTHEALKMDELFVTSTTSEITPV 248

>pdb|1ET0|A Chain A, Crystal Structure Of Aminodeoxychorismate Lyase From Escherichia Coli Length = 269

Iteration: 1
 Score = 43.5 bits (101), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 24/77 (31%), Positives = 38/77 (49%), Gaps = 1/77 (1%)
Query: 81  DVLFLNAEKYIEEVSTSNIFLVKGNEISTPPTSGTILPGITRKSIIEITHVLGYQVKERA 140
           + L L++E ++ E   +N+F  KGN + TP      + GI R+  I +     YQ+ E  
Sbjct: 161 EALVLDSEGWVTECCAANLFWRKGNVVYTPRLDQAGVNGIMRQFCIRLLAQSSYQLVEVQ 220
Query: 141 IPVEELFDAEE-VFCTG 156
             +EE   A+E V C  
Sbjct: 221 ASLEESLQADEMVICNA 237

>pdb|5DAA|A Chain A, E177k Mutant Of D-Amino Acid Aminotransferase Complexed With Pyridoxamine-5'-Phosphate Length = 277

Iteration: 1
 Score = 42.0 bits (97), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 28/92 (30%), Positives = 44/92 (47%), Gaps = 1/92 (1%)
Query: 73  EAKAKGFTDVLFLNAEKYIEEVSTSNIFLVKGNEISTPPTSGTILPGITRKSIIEITHVL 132
           EA  KG  + + L+    + + S+SN+F +K   + T P +  IL GITR  +I   + +
Sbjct: 158 EAHEKGCYEAI-LHRNNTVTKGSSSNVFGIKDGILYTHPANNMILKGITRDVVIACANEI 216
Query: 133 GYQVKERAIPVEELFDAEEVFCTGTAVGVNSV 164
              VKE      E    +E+F T T   +  V
Sbjct: 217 NMPVKEIPFTTHEALKMDELFVTSTTSEITPV 248

>pdb|1G2W|A Chain A, E177s Mutant Of The Pyridoxal-5'-phosphate Enzyme D-amino Acid Aminotransferase Length = 282

Iteration: 1
 Score = 41.6 bits (96), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 28/92 (30%), Positives = 43/92 (46%), Gaps = 1/92 (1%)
Query: 73  EAKAKGFTDVLFLNAEKYIEEVSTSNIFLVKGNEISTPPTSGTILPGITRKSIIEITHVL 132
           EA  KG  + + L+    +   S+SN+F +K   + T P +  IL GITR  +I   + +
Sbjct: 158 EAHEKGCYEAI-LHRNNTVTSGSSSNVFGIKDGILYTHPANNMILKGITRDVVIACANEI 216
Query: 133 GYQVKERAIPVEELFDAEEVFCTGTAVGVNSV 164
              VKE      E    +E+F T T   +  V
Sbjct: 217 NMPVKEIPFTTHEALKMDELFVTSTTSEITPV 248

>pdb|1A0G|A Chain A, L201a Mutant Of D-Amino Acid Aminotransferase Complexed With Pyridoxamine-5'-Phosphate Length = 282

Iteration: 1
 Score = 41.6 bits (96), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 28/92 (30%), Positives = 43/92 (46%), Gaps = 1/92 (1%)
Query: 73  EAKAKGFTDVLFLNAEKYIEEVSTSNIFLVKGNEISTPPTSGTILPGITRKSIIEITHVL 132
           EA  KG  + + L+    + E S+SN+F +K   + T P +  I  GITR  +I   + +
Sbjct: 158 EAHEKGCYEAI-LHRNNTVTEGSSSNVFGIKDGILYTHPANNMIAKGITRDVVIACANEI 216
Query: 133 GYQVKERAIPVEELFDAEEVFCTGTAVGVNSV 164
              VKE      E    +E+F T T   +  V
Sbjct: 217 NMPVKEIPFTTHEALKMDELFVTSTTSEITPV 248

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	210
3dth_A	372	Branched-chain amino acid aminotransferase; open t	2e-90
2coi_A	386	Branched chain aminotransferase 1, cytosolic; PLP-	3e-84
2a1h_A	365	Branched chain aminotransferase; fold type IV; HET	5e-84
1iye_A	309	Branched-chain amino acid aminotransferase; hexame	5e-43
2eiy_A	308	ILVE, branched-chain amino acid aminotransferase;	1e-41
3u0g_A	328	Putative branched-chain amino acid aminotransfera;	5e-40
3lul_A	272	4-amino-4-deoxychorismate lyase; structural genomi	5e-39
3csw_A	285	BCAT, putative branched-chain-amino-acid aminotran	1e-38
1i2k_A	269	4-amino-4-deoxychorismate lyase; pyridoxal phospha	3e-37
2xpf_A	292	4-amino-4-deoxychorismate lyase; para-aminobenzoic	1e-35
3sno_A	315	Hypothetical aminotransferase; D-aminoacid aminotr	1e-34
2zgi_A	246	Putative 4-amino-4-deoxychorismate lyase; TTHA0621	2e-32
3daa_A	277	D-amino acid aminotransferase; pyridoxal phosphate	7e-30
3qqm_A	221	MLR3007 protein; structural genomics, joint center	1e-25
3ceb_A	194	D-aminoacid aminotransferase-like PLP-dependent E;	2e-19

>2coi_A Branched chain aminotransferase 1, cytosolic; PLP-dependent enzyme; HET: PLP GBN; 1.90A {Homo sapiens} PDB: 2cog_A* 2coj_A* 2abj_A* Length = 386

 Score =  253 bits (649), Expect = 3e-84
 Identities = 79/228 (34%), Positives = 111/228 (48%), Gaps = 21/228 (9%)

Query: 1   MYIRPLLMGSGPVLGVAPASEYTFITYASPVGNYHKGL----LNLIVEEKFRRAIPGGTG 56
           +YIRP  +G+ P LGV   ++       SPVG Y        ++L    K+ RA  GGTG
Sbjct: 160 LYIRPTFIGTEPSLGVKKPTKALLFVLLSPVGPYFSSGTFNPVSLWANPKYVRAWKGGTG 219

Query: 57  GVKAVTNYAIIYKPIAEAKAKGFTDVLFLNAE-KYIEEVSTSNIFLVKGN-----EISTP 110
             K   NY        EA   G   VL+L  E   I EV T N+FL   N     E++TP
Sbjct: 220 DCKMGGNYGSSLFAQCEAVDNGCQQVLWLYGEDHQITEVGTMNLFLYWINEDGEEELATP 279

Query: 111 PTSGTILPGITRKSIIEITHVLG-YQVKERAIPVEELFDA------EEVFCTGTAVGVNS 163
           P  G ILPG+TR+ I+++ H  G ++V ER + +++L  A       E+F +GTA  V  
Sbjct: 280 PLDGIILPGVTRRCILDLAHQWGEFKVSERYLTMDDLTTALEGNRVREMFGSGTACVVCP 339

Query: 164 VNSITYQDERIEYKRG--AGTVGQKLYEMVTGIQTGRIEDKMGWTVEL 209
           V+ I Y+ E I          +  ++   +T IQ GR E    WT+ L
Sbjct: 340 VSDILYKGETIHIPTMENGPKLASRILSKLTDIQYGREER--DWTIVL 385

>2a1h_A Branched chain aminotransferase; fold type IV; HET: PLP GBN; 1.80A {Homo sapiens} SCOP: e.17.1.1 PDB: 1ekp_A* 1ekv_A* 1ekf_A* 1kta_A* 1kt8_A* 2hhf_B* 2hhf_A* 2hgw_A* 2hg8_A* 2hgx_A* 2hdk_A* Length = 365

 Score =  252 bits (646), Expect = 5e-84
 Identities = 69/228 (30%), Positives = 107/228 (46%), Gaps = 21/228 (9%)

Query: 1   MYIRPLLMGSGPVLGVAPASEYTFITYASPVGNYHKGL----LNLIVEEKFRRAIPGGTG 56
           +Y+RP+L+G+ P LGV+            PVG Y  G     ++L+ +  F RA  GG G
Sbjct: 140 LYVRPVLIGNEPSLGVSQPRRALLFVILCPVGAYFPGGSVTPVSLLADPAFIRAWVGGVG 199

Query: 57  GVKAVTNYAIIYKPIAEAKAKGFTDVLFLNA-EKYIEEVSTSNIFLVKGN-----EISTP 110
             K   NY        EA  +G   VL+L   +  + EV T NIF+   +     E+ TP
Sbjct: 200 NYKLGGNYGPTVLVQQEALKRGCEQVLWLYGPDHQLTEVGTMNIFVYWTHEDGVLELVTP 259

Query: 111 PTSGTILPGITRKSIIEITHVLG-YQVKERAIPVEELFDA------EEVFCTGTAVGVNS 163
           P +G ILPG+ R+S++++    G ++V ER I +++L  A       EVF +GTA  V  
Sbjct: 260 PLNGVILPGVVRQSLLDMAQTWGEFRVVERTITMKQLLRALEEGRVREVFGSGTACQVCP 319

Query: 164 VNSITYQDERIEYKRG--AGTVGQKLYEMVTGIQTGRIEDKMGWTVEL 209
           V+ I Y+D  +          +  +  + +  IQ G       W   +
Sbjct: 320 VHRILYKDRNLHIPTMENGPELILRFQKELKEIQYGIRAH--EWMFPV 365

>1iye_A Branched-chain amino acid aminotransferase; hexamer, PLP; HET: PGU; 1.82A {Escherichia coli} SCOP: e.17.1.1 PDB: 1i1l_A* 1i1m_A* 1iyd_A* 1i1k_A* 1a3g_A* Length = 309

 Score =  145 bits (368), Expect = 5e-43
 Identities = 71/214 (33%), Positives = 110/214 (51%), Gaps = 16/214 (7%)

Query: 2   YIRPLL-MGSGPVLGVAPASEYT--FITYASPVGNY------HKGLLNLIVEEKFRRAIP 52
           YIRPL+ +G    +GV P + Y+   I  A P G Y       +G+  ++    + RA P
Sbjct: 96  YIRPLIFVGDVG-MGVNPPAGYSTDVIIAAFPWGAYLGAEALEQGIDAMVS--SWNRAAP 152

Query: 53  GGT-GGVKAVTNYAIIYKPIAEAKAKGFTDVLFLNAEKYIEEVSTSNIFLVKGNEISTPP 111
                  KA  NY       +EA+  G+ + + L+   YI E +  N+F VK   + TPP
Sbjct: 153 NTIPTAAKAGGNYLSSLLVGSEARRHGYQEGIALDVNGYISEGAGENLFEVKDGVLFTPP 212

Query: 112 TSGTILPGITRKSIIEITHVLGYQVKERAIPVEELFDAEEVFCTGTAVGVNSVNSITYQD 171
            + + LPGITR +II++   LG +V+E+ +  E L+ A+EVF +GTA  +  V S+   D
Sbjct: 213 FTSSALPGITRDAIIKLAKELGIEVREQVLSRESLYLADEVFMSGTAAEITPVRSV---D 269

Query: 172 ERIEYKRGAGTVGQKLYEMVTGIQTGRIEDKMGW 205
                +   G V +++ +   G+ TG  EDK GW
Sbjct: 270 GIQVGEGRCGPVTKRIQQAFFGLFTGETEDKWGW 303

>2eiy_A ILVE, branched-chain amino acid aminotransferase; PLP-dependent enzyme; HET: PLP; 1.35A {Thermus thermophilus} PDB: 1wrv_A* 2ej0_A* 2ej2_A* 2ej3_A* Length = 308

 Score =  141 bits (359), Expect = 1e-41
 Identities = 75/214 (35%), Positives = 94/214 (43%), Gaps = 17/214 (7%)

Query: 2   YIRPLL-MGSGPVLGVAPASEY--TFITYASPVGNY------HKGLLNLIVEEKFRRAIP 52
           YIRPL  MG+   LGV P        +  A   G Y       KG   LI    + R   
Sbjct: 95  YIRPLAWMGAK-ALGVNPLPNNPAEVMVAAWEWGAYLGEEAVRKGA-RLITS-SWARFPA 151

Query: 53  GGT-GGVKAVTNYAIIYKPIAEAKAKGFTDVLFLNAEKYIEEVSTSNIFLVKGNEISTPP 111
               G  K   NY        EA A G  + L L+ E Y+ E S  N+F V+   I    
Sbjct: 152 NVMPGKAKVGGNYVNSALAKMEAVAAGADEALLLDEEGYVAEGSGENLFFVRDGVIYALE 211

Query: 112 TSGTILPGITRKSIIEITHVLGYQVKERAIPVEELFDAEEVFCTGTAVGVNSVNSITYQD 171
            S   L GITR S+I I   LGY+V+      ++L+ A+EVF TGTA  V  V+ I   D
Sbjct: 212 HSV-NLEGITRDSVIRIAKDLGYEVQVVRATRDQLYMADEVFMTGTAAEVTPVSMI---D 267

Query: 172 ERIEYKRGAGTVGQKLYEMVTGIQTGRIEDKMGW 205
            R   K  AG V  +L E+     TGR  +  GW
Sbjct: 268 WRPIGKGTAGPVALRLREVYLEAVTGRRPEYEGW 301

>3u0g_A Putative branched-chain amino acid aminotransfera; structural genomics, seattle structural genomics center for infectious disease; 1.90A {Burkholderia pseudomallei} Length = 328

 Score =  138 bits (350), Expect = 5e-40
 Identities = 60/215 (27%), Positives = 94/215 (43%), Gaps = 20/215 (9%)

Query: 2   YIRPLLMGSGPVLGVAP--ASEYTFITYASPVGNY------HKGLLNLIVEEKFRRAIPG 53
           Y+RP++      LGV+    + +  I  A P G Y       KG+  +     F R    
Sbjct: 119 YLRPIIWIGSEKLGVSAKGNTIHVAI-AAWPWGAYLGEEGLAKGI-RVKTS-SFTRHHVN 175

Query: 54  GT-GGVKAVTNY--AIIYKPIAEAKAKGFTDVLFLNAEKYIEEVSTSNIFLVKGNEISTP 110
            +    KA   Y  +I+     EA A G+ + L L+ + Y+ E S  N FLV   ++ TP
Sbjct: 176 VSMVRAKASGWYVNSILAN--QEATADGYDEALLLDVDGYVSEGSGENFFLVNRGKLYTP 233

Query: 111 PTSGTILPGITRKSIIEITHVLGYQVKERAIPVEELFDAEEVFCTGTAVGVNSVNSITYQ 170
             +   L GITR ++I +    G +V E+ I  +E++ A+E F TGTA  V  +  +   
Sbjct: 234 DLAS-CLDGITRDTVITLAKEAGIEVIEKRITRDEVYTADEAFFTGTAAEVTPIREL--- 289

Query: 171 DERIEYKRGAGTVGQKLYEMVTGIQTGRIEDKMGW 205
           D R       G + +KL      +  G+      W
Sbjct: 290 DNRTIGGGARGPITEKLQSAFFDVVNGKSAKHADW 324

>3lul_A 4-amino-4-deoxychorismate lyase; structural genomi center for structural genomics, JCSG, protein structure INI PSI-2, pyridoxal phosphate; HET: MSE LLP; 1.78A {Legionella pneumophila} Length = 272

 Score =  134 bits (339), Expect = 5e-39
 Identities = 49/177 (27%), Positives = 81/177 (45%), Gaps = 13/177 (7%)

Query: 2   YIRPLL-MGSGPVLGVAPASEYTFITYAS-PVGNYHKGLLNLIVEEKFRRAIPGGTGGVK 59
            I+ +L  G     G+A   + + + + +         +  LI    + R        +K
Sbjct: 85  GIKAILSGGPAS-RGLAERGQVSQLIFQTFNYSIQKHPV-RLISI-NWLRDKANPLYQLK 141

Query: 60  AVTNYA--IIYKPIAEAKAKGFTDVLFLNAEKYIEEVSTSNIFLVKGNEISTPPTSGTIL 117
           +V NY   II +   +A A G  D LF N E ++ E + +N+FL++ N + TP     IL
Sbjct: 142 SV-NYLEAIIAQ--RQAIAVGADDALFFNTENHVTETTCANLFLIENNILYTPRVEDGIL 198

Query: 118 PGITRKSIIEITHVLGYQVKERAIPVEELFDAEEVFCTGTAVGVNSVNSITYQDERI 174
           PGITR  +I         V+E ++  + + DA+ VF T +  G+  V S+   D  I
Sbjct: 199 PGITRARLISHCQQHKMSVQEISLTKKRIEDADAVFLTNSLQGIRRVLSL---DNII 252

>3csw_A BCAT, putative branched-chain-amino-acid aminotransfera; TM0831, putative branched-chain amino acid aminotransferase; HET: PLP CIT; 2.15A {Thermotoga maritima MSB8} Length = 285

 Score =  133 bits (337), Expect = 1e-38
 Identities = 58/205 (28%), Positives = 90/205 (43%), Gaps = 19/205 (9%)

Query: 2   YIRPLL-MGSGPVLGVAPASEYTFITYASPVGNYHKGLLNLIVEEKFRRAIPGGT-GGVK 59
            I+  L   SG VL         F+     + +   G+  + +    RR     T   +K
Sbjct: 97  RIKVYLFPDSGEVL---------FVFSPLNIPDLETGV-EVKIS-NVRRIPDLSTPPALK 145

Query: 60  AVTNYAIIYKPIAEAKAKGFTDVLFLNAEKYIEEVSTSNIFLVKGNEISTPPTSGTILPG 119
             T    I   +A  +     DV+ L     + E S SN+FLVK  ++ TP     IL G
Sbjct: 146 I-TGRTDIV--LARREIVDCYDVILLGLNGQVCEGSFSNVFLVKEGKLITPSLDSGILDG 202

Query: 120 ITRKSIIEITHVLGYQVKERAIPVEELFDAEEVFCTGTAVGVNSVNSITYQDERIEYKRG 179
           ITR+++I++   L   V+ER + V ELF+A+E+F T T+ GV  V  +   +E   ++  
Sbjct: 203 ITRENVIKLAKSLEIPVEERVVWVWELFEADEMFLTHTSAGVVPVRRL---NEHSFFEEE 259

Query: 180 AGTVGQKLYEMVTGIQTGRIEDKMG 204
            G V   L E          E+ +G
Sbjct: 260 PGPVTATLMENFEPFVLNLEENWVG 284

>1i2k_A 4-amino-4-deoxychorismate lyase; pyridoxal phosphate, PABC; HET: PLP; 1.79A {Escherichia coli} SCOP: e.17.1.1 PDB: 1et0_A* 1i2l_A* Length = 269

 Score =  129 bits (327), Expect = 3e-37
 Identities = 39/200 (19%), Positives = 77/200 (38%), Gaps = 23/200 (11%)

Query: 2   YIRPLL-MGSGPVLGVAPASEY--TFITYASPVGNYHKGL----LNLIVEEKFRRAIPGG 54
            ++ ++  GSG   G +  +    T I   +    ++  L    + L +    R      
Sbjct: 78  VLKVVISRGSGG-RGYSTLNSGPATRILSVTAYPAHYDRLRNEGITLALS-PVRLGRNPH 135

Query: 55  TGGVKAVTNY--AIIYKPIAEAKAKGFTDVLFLNAEKYIEEVSTSNIFLVKGNEISTPPT 112
             G+K + N    ++ +  +  +     + L L++E ++ E   +N+F  KGN + TP  
Sbjct: 136 LAGIKHL-NRLEQVLIR--SHLEQTNADEALVLDSEGWVTECCAANLFWRKGNVVYTPRL 192

Query: 113 SGTILPGITRKSIIEITHVLGYQVKERAIPVEELFDAEEVFCTGTAVGVNSVNSITYQDE 172
               + GI R+  I +     YQ+ E    +EE   A+E+      + V  V +     +
Sbjct: 193 DQAGVNGIMRQFCIRLLAQSSYQLVEVQASLEESLQADEMVICNALMPVMPVCAC---GD 249

Query: 173 RIEYKRGAGTVG---QKLYE 189
                  + T+      L E
Sbjct: 250 V---SFSSATLYEYLAPLCE 266

>3sno_A Hypothetical aminotransferase; D-aminoacid aminotransferase-like PLP-dependent enzymes, STR genomics; HET: MSE; 1.60A {Corynebacterium glutamicum} Length = 315

 Score =  123 bits (312), Expect = 1e-34
 Identities = 40/147 (27%), Positives = 69/147 (46%), Gaps = 12/147 (8%)

Query: 48  RRAIPGGTGGVKAVTNYA--IIYKPIAEAKAKGFTDVLFLNAEKYIEEVSTSNIFLVKGN 105
           R   P  T G K    YA  +       AK+ GF DV+F + +  + E +TS +   KG+
Sbjct: 175 RTPAPWLTVGAKT-LAYAANMAAL--RYAKSNGFDDVIFTDGD-RVLEGATSTVVSFKGD 230

Query: 106 EISTPPTSGTILPGITRKSIIEITHVLGYQVKERAIPVEELFDAEEVFCTGTAVGVNSVN 165
           +I TP   G ILPG T+ ++       G++ KE+ + +++LF A+ V+   +  G   V 
Sbjct: 231 KIRTPSPGGDILPGTTQAALFAHATEKGWRCKEKDLSIDDLFGADSVWLVSSVRGPVRVT 290

Query: 166 SITYQDERIEYKRGAGTVGQKLYEMVT 192
            +   D     K       +++  ++T
Sbjct: 291 RL---DGH---KLRKPDNEKEIKALIT 311

>2zgi_A Putative 4-amino-4-deoxychorismate lyase; TTHA0621, PLP cofactor, pyridoxal enzyme, structural NPPSFA; HET: PLP PGE; 1.93A {Thermus thermophilus} Length = 246

 Score =  116 bits (293), Expect = 2e-32
 Identities = 35/169 (20%), Positives = 64/169 (37%), Gaps = 21/169 (12%)

Query: 2   YIRPLL-MGSGPVLGVAPASEYTFITYASPVGNYHKGLLNLIVEEKFRRAIPGGTGGVKA 60
            +R    +G G  + ++ A  Y       P+  Y +G+   +    +R          K 
Sbjct: 78  CLRLRFTVGEG--VRLSEARPYA----PLPLSLYREGVRVRLT--GYRVHPD--LARYKT 127

Query: 61  VTNYA--IIYKPIAEAKAKGFTDVLFLNAEKYIEEVSTSNIFLVKGNEISTPPTSGTILP 118
             NY    +     EA+ +G  + L L+A  ++ + S ++  L +   +         L 
Sbjct: 128 -GNYLPYRLAL--EEARKEGAFEGLLLDAFGHVVDGSRTSPLLFREGTLYLLE---GGLE 181

Query: 119 GITRKSIIEITHVLGYQVKERAIPVEELFDAEEVFCTGTAVGVNSVNSI 167
           GITR+ + E    LG +V+      E L     +   G+ VG+  V   
Sbjct: 182 GITREKVAEAARGLGLRVERGLFRPEGL--RGHLLLAGSGVGLLPVRPP 228

>3daa_A D-amino acid aminotransferase; pyridoxal phosphate, transaminase; HET: PDD; 1.90A {Bacillus SP} SCOP: e.17.1.1 PDB: 4daa_A* 3lqs_A* 1daa_A* 2daa_A* 5daa_A* 1g2w_A* 1a0g_A* 2dab_A* Length = 277

 Score =  110 bits (278), Expect = 7e-30
 Identities = 38/124 (30%), Positives = 55/124 (44%), Gaps = 15/124 (12%)

Query: 73  EAKAKGFTDVLFLNAEKYIEEVSTSNIFLVKGNEISTPPTSGTILPGITRKSIIEITHVL 132
           EA  KG  + + L+    + E S+SN+F +K   + T P +  IL GITR  +I   + +
Sbjct: 158 EAHEKGCYEAI-LHRNNTVTEGSSSNVFGIKDGILYTHPANNMILKGITRDVVIACANEI 216

Query: 133 GYQVKERAIPVEELFDAEEVFCTGTAVGVNSVNSITYQDER-IEYKRGAGTVG------Q 185
              VKE      E    +E+F T T   +  V  I   D + I      G VG      Q
Sbjct: 217 NMPVKEIPFTTHEALKMDELFVTSTTSEITPVIEI---DGKLI----RDGKVGEWTRKLQ 269

Query: 186 KLYE 189
           K +E
Sbjct: 270 KQFE 273

>3qqm_A MLR3007 protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-biology, transferase; HET: LLP; 2.30A {Mesorhizobium loti} Length = 221

 Score = 98.1 bits (245), Expect = 1e-25
 Identities = 22/121 (18%), Positives = 46/121 (38%), Gaps = 7/121 (5%)

Query: 48  RRAIPGGTGGVKAVTNYAIIYKPIAEAKAKGFTDVLFLNAEKYIEEVSTSNIFLVKGN-E 106
           R          K  +   +     +E       +VL  N    I E + +N+F   G+  
Sbjct: 107 RLDSQNTLLRHKT-SRRQLYTHARSEYLVTQADEVLLANERGEICEGTITNVFADFGDGV 165

Query: 107 ISTPPTSGTILPGITRKSIIEITHVLGYQVKERAIPVEELFDAEEVFCTGTAVGVNSVNS 166
           ++TP     +LPG+ R  +++       + +E     ++L  A+ +F   +  G+     
Sbjct: 166 LATPRLDCGLLPGVLRAELLDE-----GRAEEAIYSYDDLKSAKALFVGNSLRGLIPAKL 220

Query: 167 I 167
           +
Sbjct: 221 V 221

>3ceb_A D-aminoacid aminotransferase-like PLP-dependent E; joint center for structural genomics, protein structure initiative, PSI-2, lyase; HET: LLP; 2.40A {Haemophilus somnus} Length = 194

 Score = 81.3 bits (201), Expect = 2e-19
 Identities = 19/100 (19%), Positives = 37/100 (37%), Gaps = 9/100 (9%)

Query: 62  TNYAIIYKPIAEAKAKGFTDVLFLNAEKYIEEVSTSNIFLVKGNEISTPPTSGTILPGIT 121
            +   +       K K   D + +  +  + + S  N+   + N+  TP     +L G  
Sbjct: 104 FSDRTLLN--NLLKQKEECDEIMIIRQGKVTDCSIGNLIFRQNNQWITPDKP--LLEGTQ 159

Query: 122 RKSIIEITHVLGYQVKERAIPVEELFDAEEVFCTGTAVGV 161
           R  ++E       ++  R I  E+L   EE+       G+
Sbjct: 160 RAKLLEQ-----KKIIAREIFFEDLAQYEEIRLINAMNGL 194

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	210
3dtg_A	372	Branched-chain amino acid aminotransferase; open t	100.0
4dqn_A	345	Putative branched-chain amino acid aminotransfera;	100.0
3dth_A	372	Branched-chain amino acid aminotransferase; open t	100.0
3u0g_A	328	Putative branched-chain amino acid aminotransfera;	100.0
1iye_A	309	Branched-chain amino acid aminotransferase; hexame	100.0
3uzo_A	358	Branched-chain-amino-acid aminotransferase; BCAT,	100.0
2eiy_A	308	ILVE, branched-chain amino acid aminotransferase;	100.0
2a1h_A	365	Branched chain aminotransferase; fold type IV; HET	100.0
2coi_A	386	Branched chain aminotransferase 1, cytosolic; PLP-	100.0
1i2k_A	269	4-amino-4-deoxychorismate lyase; pyridoxal phospha	100.0
2xpf_A	292	4-amino-4-deoxychorismate lyase; para-aminobenzoic	100.0
3daa_A	277	D-amino acid aminotransferase; pyridoxal phosphate	100.0
3lul_A	272	4-amino-4-deoxychorismate lyase; structural genomi	100.0
3csw_A	285	BCAT, putative branched-chain-amino-acid aminotran	100.0
3sno_A	315	Hypothetical aminotransferase; D-aminoacid aminotr	100.0
3qqm_A	221	MLR3007 protein; structural genomics, joint center	100.0
2zgi_A	246	Putative 4-amino-4-deoxychorismate lyase; TTHA0621	100.0
3ceb_A	194	D-aminoacid aminotransferase-like PLP-dependent E;	99.96

>3dtg_A Branched-chain amino acid aminotransferase; open twisted alpha/beta; HET: PLP; 1.90A {Mycobacterium smegmatis} PDB: 3dtf_A* 3jz6_A* 3ht5_A*

Probab=100.00  E-value=1e-50  Score=358.96  Aligned_cols=210  Identities=36%  Similarity=0.661  Sum_probs=190.1

Q ss_pred             CeEEEEEEecCCCcCcCCCCCcEEEEEEEecCCCcC---CceEEEEEeeeeecCCCCCCCCccccChHHHHHHHHHHHHC
Q 028343            1 MYIRPLLMGSGPVLGVAPASEYTFITYASPVGNYHK---GLLNLIVEEKFRRAIPGGTGGVKAVTNYAIIYKPIAEAKAK   77 (210)
Q Consensus         1 ~yiR~~~~g~~~~~g~~~~~~~~~~i~~~p~~~~~~---~g~~~~~~~~~~r~~~~~l~~~K~~~~y~~~~~a~~ea~~~   77 (210)
                      +||||+++++.+.+|+.|+.++.++++++|.++++.   .+..+.++....|..|......|..+||+++++++++|+++
T Consensus       147 ~YiRp~~~~~~~~lgv~p~~~~~~~ii~~p~~~~~~~~~~~~~~~~~~~~~R~~p~~~~~~K~~gNY~~~~la~~eA~~~  226 (372)
T 3dtg_A          147 LYLRPFVIATEPGLGVRPSNEYRYLLIASPAGAYFKGGIKPVSVWLSHEYVRASPGGTGAAKFGGNYAASLLAQAQAAEM  226 (372)
T ss_dssp             EEEEEEEEECCCCCSCSCCSEEEEEEEEEEESCSSTTSSSCEEEEECSSCCSCCTTSSTTSCCHHHHHHHHHHHHHHHHT
T ss_pred             eEEEEEEEeecCccCcCCCCCceeeeEecccccccccCcccceeecccceeecCcCCcchHHhcCCcchhhhHHHHHHhc
Confidence            599999999988999999888999999999887765   34455555567788888888888888999999999999999


Q ss_pred             CCCeEEEEc--CCCcEEEeCceEEEEE----ECCEEEccCCCCCCcccchHHHHHHHHHHcCCcEEEEecCHHHHhhh--
Q 028343           78 GFTDVLFLN--AEKYIEEVSTSNIFLV----KGNEISTPPTSGTILPGITRKSIIEITHVLGYQVKERAIPVEELFDA--  149 (210)
Q Consensus        78 g~deal~ld--~~g~v~E~~~sNlf~~----~~~~l~TP~l~~~~L~GitR~~vl~~a~~~gi~v~e~~i~~~el~~a--  149 (210)
                      |+||+||+|  .+|+|+|++++|+|+|    +||+++|||++.++|+||||+.||++|+++|++|+|++++++||..|  
T Consensus       227 G~deal~Ld~~~~g~V~E~~~sNiF~V~~~~kdg~liTPpl~~~iL~GITR~sVi~LA~~~Gi~V~Er~it~~El~~A~~  306 (372)
T 3dtg_A          227 GCDQVVWLDAIERRYVEEMGGMNLFFVFGSGGSARLVTPELSGSLLPGITRDSLLQLATDAGFAVEERKIDVDEWQKKAG  306 (372)
T ss_dssp             TCSEEEEECTTTSCBEEEETTEEEEEEESCGGGCEEEECCCCSSSCCCHHHHHHHHHHHHHTCEEEECCCBHHHHHHHHH
T ss_pred             CcchhhhhccccccceeecCceEEEEEEecCCCceEEeCCccccccccHHHHHHHHHHHHCCceEEEEeCCHHHHHHHhh
Confidence            999999999  4788999999999999    67899999999999999999999999999999999999999999998  


Q ss_pred             ----hhhhhcccccceEEEEEEEecCeEEee-cCCccHHHHHHHHHHHHhHccCCCCCCCCeEeCC
Q 028343          150 ----EEVFCTGTAVGVNSVNSITYQDERIEY-KRGAGTVGQKLYEMVTGIQTGRIEDKMGWTVELD  210 (210)
Q Consensus       150 ----de~f~tns~~gi~pV~~I~~~~~~i~~-~~~~g~~t~~L~~~~~~~~~g~~~~~~~w~~~~~  210 (210)
                          ||+|+|||+.+|+||.+|+..+..+.+ +|++||+|++|+++|.+||+|+.+|+++|+++|+
T Consensus       307 ~~~~dEvF~tGTaa~I~PV~~Id~~~~~~~ig~G~~Gpvt~~L~~~~~~iq~G~~~d~~~W~~~v~  372 (372)
T 3dtg_A          307 AGEITEVFACGTAAVITPVSHVKHHDGEFTIADGQPGEITMALRDTLTGIQRGTFADTHGWMARLN  372 (372)
T ss_dssp             HTSEEEEEEEETTTEEEEEEEEEETTEEEECTTSSCCHHHHHHHHHHHHHHTTSSCCTTCCEEECC
T ss_pred             cCCCcEEEECCCcceEEEEEEEecCCceEEcCCCCcCHHHHHHHHHHHHHHCCCCCCCCCCcEeCC
Confidence                999999999999999999876554333 4679999999999999999999999999999996

>4dqn_A Putative branched-chain amino acid aminotransfera; aminotransferase, transferase; 1.97A {Streptococcus mutans}

Probab=100.00  E-value=7.2e-51  Score=356.63  Aligned_cols=209  Identities=38%  Similarity=0.646  Sum_probs=191.5

Q ss_pred             CeEEEEEEecCCCcCcCCCCCcEEEEEEEecCCCcC---CceEEEEEeeeeecCCCCCCCCccccChHHHHHHHHHHHHC
Q 028343            1 MYIRPLLMGSGPVLGVAPASEYTFITYASPVGNYHK---GLLNLIVEEKFRRAIPGGTGGVKAVTNYAIIYKPIAEAKAK   77 (210)
Q Consensus         1 ~yiR~~~~g~~~~~g~~~~~~~~~~i~~~p~~~~~~---~g~~~~~~~~~~r~~~~~l~~~K~~~~y~~~~~a~~ea~~~   77 (210)
                      +||||+++|+.+.+|+.|+.+++++|+++|+++++.   +|+++.++++++|..++.++++|+..||+++++|+++|+++
T Consensus       127 ~yiR~~v~~~~~~~g~~p~~~~~~~i~~~p~~~~~~~~~~gv~l~~~~~~~R~~~~~~~~~Kt~~nyl~~vla~~eA~~~  206 (345)
T 4dqn_A          127 LYLRPLLIGVGDVIGVHPADEYIFTIFAMPVGNYFKGGLAPTNFLIQDDYDRAAPHGTGAAKVGGNYAASLLPGKVAHER  206 (345)
T ss_dssp             EEEEEEEEEESCCCSSCCCSEEEEEEEEEEECCSCTTSCCCEEEEECTTCCSSCTTSSTTSCCHHHHHHHHHHHHHHHHT
T ss_pred             EEEEEEEEeCCCccCCCCCCCeEEEEEEEECccccccCCCCEEEEEccceEecCCCccccccccccCHHHHHHHHHHHHC
Confidence            499999999888899988778999999999987654   78999988657898888899999945999999999999999


Q ss_pred             CCCeEEEEcC--CCcEEEeCceEEEEE-ECCEEEccCCCCCCcccchHHHHHHHHHH-cCCcEEEEecCHHHHhhhhhhh
Q 028343           78 GFTDVLFLNA--EKYIEEVSTSNIFLV-KGNEISTPPTSGTILPGITRKSIIEITHV-LGYQVKERAIPVEELFDAEEVF  153 (210)
Q Consensus        78 g~deal~ld~--~g~v~E~~~sNlf~~-~~~~l~TP~l~~~~L~GitR~~vl~~a~~-~gi~v~e~~i~~~el~~ade~f  153 (210)
                      |+||+||+|.  +|+|+|++++|+|++ +||+|+||+ +.++|+||||+.||++|++ +|++|+|++++++||.+|||+|
T Consensus       207 G~de~l~ld~~~~g~v~E~~~sNif~v~~~g~l~TP~-~~~iL~GitR~~vl~la~~~~g~~v~e~~i~~~el~~adevf  285 (345)
T 4dqn_A          207 QFSDVIYLDPATHTKIEEVGSANFFGITKDNEFITPL-SPSILPSVTKYSLLYLAEHRFGMKAIEGDVCVDELDKFVEAG  285 (345)
T ss_dssp             TCSCEEEECTTTSCBEEEETTEEEEEEETTCEEEECC-CTTSCCCHHHHHHHHHHHHTTCCEEEECCCBTTCGGGEEEEE
T ss_pred             CCCEEEEEcCCCCCeEEEcCCceEEEEecCCEEEeCC-CCCccHHHHHHHHHHHHHhccCCeEEEEeCCHHHHHhhhHHh
Confidence            9999999998  699999999999998 899999999 9999999999999999999 9999999999999999999999


Q ss_pred             hcccccceEEEEEEEecCeEEeec-C-CccHHHHHHHHHHHHhHccCCCCCCCCeEeCC
Q 028343          154 CTGTAVGVNSVNSITYQDERIEYK-R-GAGTVGQKLYEMVTGIQTGRIEDKMGWTVELD  210 (210)
Q Consensus       154 ~tns~~gi~pV~~I~~~~~~i~~~-~-~~g~~t~~L~~~~~~~~~g~~~~~~~w~~~~~  210 (210)
                      +|||+.+|+||.+|+..++.+.+. + ++||+|++|+++|.++++|+.+|+++|+++|+
T Consensus       286 ~t~t~~~i~PV~~Id~~~~~~~i~~~~~~Gpvt~~L~~~~~~i~~g~~~~~~~W~~~v~  344 (345)
T 4dqn_A          286 ACGTAAVISPIGGVQHGDDFHVFYSETEVGPVTHKLYDELTGIQFGDVKAPEGWIYKVD  344 (345)
T ss_dssp             EEETTTEEEEEEEEEETTEEEESSCSSSCCHHHHHHHHHHHHHHTTSSCCCTTCEEETT
T ss_pred             hhcchhHEEEEEEECcccceeeeCCCCCcCHHHHHHHHHHHHHHcCCCCCCCCCceECC
Confidence            999999999999998555544343 3 48999999999999999999999999999986

>3u0g_A Putative branched-chain amino acid aminotransfera; structural genomics, seattle structural genomics center for infectious disease; 1.90A {Burkholderia pseudomallei}

Probab=100.00  E-value=4.2e-50  Score=349.65  Aligned_cols=204  Identities=27%  Similarity=0.434  Sum_probs=184.5

Q ss_pred             CeEEEEEEecCCCcCcCCCC-CcEEEEEEEecCCCcC-----CceEEEEEeeeeecCCCC-CCCCccccChHHHHHHHHH
Q 028343            1 MYIRPLLMGSGPVLGVAPAS-EYTFITYASPVGNYHK-----GLLNLIVEEKFRRAIPGG-TGGVKAVTNYAIIYKPIAE   73 (210)
Q Consensus         1 ~yiR~~~~g~~~~~g~~~~~-~~~~~i~~~p~~~~~~-----~g~~~~~~~~~~r~~~~~-l~~~K~~~~y~~~~~a~~e   73 (210)
                      +||||+++++.+.+|+.|+. .++++|++.|+++++.     +|+++.++ +++|..++. ++++|+++||+++++|+++
T Consensus       118 ~~iR~~vtrg~~~~g~~p~~~~~~~~i~~~p~~~~~~~~~~~~gv~l~~~-~~~R~~~~~~~~~~K~t~nyl~~vla~~e  196 (328)
T 3u0g_A          118 CYLRPIIWIGSEKLGVSAKGNTIHVAIAAWPWGAYLGEEGLAKGIRVKTS-SFTRHHVNVSMVRAKASGWYVNSILANQE  196 (328)
T ss_dssp             EEEEEEEEECSSCCSTTCCCCCEEEEEEEEECC----HHHHHHCEEEEEC-SSCCCCTTTSCTTSCBGGGHHHHHHHHHH
T ss_pred             eEEEEEEEecCCCCCcCCCCCCcEEEEEEEEcCCCCChhhhcCCEEEEEe-eeeecCCCCcccchhhhhhhHHHHHHHHH
Confidence            49999999888888988764 6889999999887643     69999887 467777765 7999955699999999999


Q ss_pred             HHHCCCCeEEEEcCCCcEEEeCceEEEEEECCEEEccCCCCCCcccchHHHHHHHHHHcCCcEEEEecCHHHHhhhhhhh
Q 028343           74 AKAKGFTDVLFLNAEKYIEEVSTSNIFLVKGNEISTPPTSGTILPGITRKSIIEITHVLGYQVKERAIPVEELFDAEEVF  153 (210)
Q Consensus        74 a~~~g~deal~ld~~g~v~E~~~sNlf~~~~~~l~TP~l~~~~L~GitR~~vl~~a~~~gi~v~e~~i~~~el~~ade~f  153 (210)
                      |+++|+||+||+|.+|+|+|++++|+|+++||+|+||+++. +|+||||+.|+++|+++|++|+|++++++||.+|||+|
T Consensus       197 A~~~G~~e~l~ld~~g~v~E~~~sNif~v~~g~l~TP~~~~-iL~GitR~~vl~~a~~~g~~v~e~~i~~~eL~~adevf  275 (328)
T 3u0g_A          197 ATADGYDEALLLDVDGYVSEGSGENFFLVNRGKLYTPDLAS-CLDGITRDTVITLAKEAGIEVIEKRITRDEVYTADEAF  275 (328)
T ss_dssp             HHHTTCSEEEEECTTSCEEEESSSEEEEEETTEEEECCSSS-SCCCHHHHHHHHHHHHTTCCEEECCCCHHHHHTCSEEE
T ss_pred             HHHCCCCEEEEECCCCcEEEcCceeEEEEECCEEEeCCccc-cchHHHHHHHHHHHHHcCCeEEEEeCCHHHHhhCCEEE
Confidence            99999999999999999999999999999999999999987 99999999999999999999999999999999999999


Q ss_pred             hcccccceEEEEEEEecCeEEeecCCccHHHHHHHHHHHHhHccCCCCCCCCeEeC
Q 028343          154 CTGTAVGVNSVNSITYQDERIEYKRGAGTVGQKLYEMVTGIQTGRIEDKMGWTVEL  209 (210)
Q Consensus       154 ~tns~~gi~pV~~I~~~~~~i~~~~~~g~~t~~L~~~~~~~~~g~~~~~~~w~~~~  209 (210)
                      +|||++||+||++|+  ++.++ ++++||++++|+++|.++++|+.+|+++|+++|
T Consensus       276 ~tns~~~v~PV~~Id--~~~~~-~g~~g~vt~~L~~~~~~~~~g~~~~~~~W~~~v  328 (328)
T 3u0g_A          276 FTGTAAEVTPIRELD--NRTIG-GGARGPITEKLQSAFFDVVNGKSAKHADWLTKI  328 (328)
T ss_dssp             EEETTTEEEEEEEET--TEECT-TSSCCHHHHHHHHHHHHHHTTCCSTTGGGEEEC
T ss_pred             EEcchhhEEEEEEEC--CEECC-CCCCCHHHHHHHHHHHHHHcCCCCCCCCCceeC
Confidence            999999999999995  77763 566899999999999999999999999999987

>1iye_A Branched-chain amino acid aminotransferase; hexamer, PLP; HET: PGU; 1.82A {Escherichia coli} SCOP: e.17.1.1 PDB: 1i1l_A* 1i1m_A* 1iyd_A* 1i1k_A* 1a3g_A*

Probab=100.00  E-value=8.2e-49  Score=338.71  Aligned_cols=205  Identities=33%  Similarity=0.540  Sum_probs=186.2

Q ss_pred             CeEEEEEEecCCCcCcCCC--CCcEEEEEEEecCCCcC-----CceEEEEEeeeeecCCCC-CCCCccccChHHHHHHHH
Q 028343            1 MYIRPLLMGSGPVLGVAPA--SEYTFITYASPVGNYHK-----GLLNLIVEEKFRRAIPGG-TGGVKAVTNYAIIYKPIA   72 (210)
Q Consensus         1 ~yiR~~~~g~~~~~g~~~~--~~~~~~i~~~p~~~~~~-----~g~~~~~~~~~~r~~~~~-l~~~K~~~~y~~~~~a~~   72 (210)
                      .|||++++++.+.+|+.|+  .++++++++.|+++++.     +|+++.++ +++|..++. ++++|+++||+.++++++
T Consensus        95 ~~iR~~v~~g~~~~g~~p~~~~~~~~~i~~~p~~~~~~~~~~~~gv~l~~~-~~~r~~~~~~~~~~K~~~ny~~~~la~~  173 (309)
T 1iye_A           95 AYIRPLIFVGDVGMGVNPPAGYSTDVIIAAFPWGAYLGAEALEQGIDAMVS-SWNRAAPNTIPTAAKAGGNYLSSLLVGS  173 (309)
T ss_dssp             EEEEEEEEECSSCSSSSCCTTCCEEEEEEEECCCCTTCTTHHHHCEEEEEC-SSCCCCTTTSCTTSCBGGGHHHHHHHHH
T ss_pred             EEEEEEEEeCCCccCCCCCCCCCcEEEEEEEEcCccCCcccccCCeEEEEe-eeeccCCCCCCccccchhhhHHHHHHHH
Confidence            4899999988778888865  37889999999887543     58999887 466776654 589998669999999999


Q ss_pred             HHHHCCCCeEEEEcCCCcEEEeCceEEEEEECCEEEccCCCCCCcccchHHHHHHHHHHcCCcEEEEecCHHHHhhhhhh
Q 028343           73 EAKAKGFTDVLFLNAEKYIEEVSTSNIFLVKGNEISTPPTSGTILPGITRKSIIEITHVLGYQVKERAIPVEELFDAEEV  152 (210)
Q Consensus        73 ea~~~g~deal~ld~~g~v~E~~~sNlf~~~~~~l~TP~l~~~~L~GitR~~vl~~a~~~gi~v~e~~i~~~el~~ade~  152 (210)
                      +|+++|+||+||+|.+|+|+|++++|||+++||+|+||+++.++|+||||+.||++|+++|++|+|++++++||.+|||+
T Consensus       174 ~A~~~G~de~l~ld~~G~V~Egs~sNif~v~~g~l~TP~l~~~iL~GitR~~ll~~a~~~g~~v~E~~i~~~eL~~adev  253 (309)
T 1iye_A          174 EARRHGYQEGIALDVNGYISEGAGENLFEVKDGVLFTPPFTSSALPGITRDAIIKLAKELGIEVREQVLSRESLYLADEV  253 (309)
T ss_dssp             HHHHTTCSEEEEECTTSBEEEETTBEEEEEETTEEEECCGGGTCCCCHHHHHHHHHHHHTTCCEEECCCBTTHHHHCSEE
T ss_pred             HHHHcCCCEEEEECCCCcEEEcCceEEEEEECCEEECCCCCCCCCCCHHHHHHHHHHHHcCCeEEEEeCCHHHHhhCcEE
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhcccccceEEEEEEEecCeEEeecCCccHHHHHHHHHHHHhHccCCCCCCCCeEeC
Q 028343          153 FCTGTAVGVNSVNSITYQDERIEYKRGAGTVGQKLYEMVTGIQTGRIEDKMGWTVEL  209 (210)
Q Consensus       153 f~tns~~gi~pV~~I~~~~~~i~~~~~~g~~t~~L~~~~~~~~~g~~~~~~~w~~~~  209 (210)
                      |+|||++||+||.+|+  ++.++ .+++||++++|+++|.++++|+.+++++|+++|
T Consensus       254 fltns~~gv~PV~~id--~~~~~-~g~~g~~~~~l~~~~~~~~~g~~~~~~~w~~~v  307 (309)
T 1iye_A          254 FMSGTAAEITPVRSVD--GIQVG-EGRCGPVTKRIQQAFFGLFTGETEDKWGWLDQV  307 (309)
T ss_dssp             EEEETTTEEEEEEEET--TEECT-TSSCCHHHHHHHHHHHGGGTTSSCCCSCCEEEC
T ss_pred             EEccCCCEEEEEEEEC--CEECC-CCCCCHHHHHHHHHHHHHHcCCCCccCCCCeEC
Confidence            9999999999999995  77753 456899999999999999999999999999987

>3uzo_A Branched-chain-amino-acid aminotransferase; BCAT, amino-acid biosynthesis, branched-CH acid biosynthesis, pyridoxal phosphate, L-GLUT; HET: PLP GLU; 2.00A {Deinococcus radiodurans} PDB: 3uzb_A* 3uyy_A*

Probab=100.00  E-value=4.5e-49  Score=346.56  Aligned_cols=207  Identities=36%  Similarity=0.608  Sum_probs=187.9

Q ss_pred             CeEEEEEEecCCCcCcCCCCCcEEEEEEEecCCCcC---CceEEEEEeeeeecCCCCCCCCccccChHHHHHHHHHHHHC
Q 028343            1 MYIRPLLMGSGPVLGVAPASEYTFITYASPVGNYHK---GLLNLIVEEKFRRAIPGGTGGVKAVTNYAIIYKPIAEAKAK   77 (210)
Q Consensus         1 ~yiR~~~~g~~~~~g~~~~~~~~~~i~~~p~~~~~~---~g~~~~~~~~~~r~~~~~l~~~K~~~~y~~~~~a~~ea~~~   77 (210)
                      +||||+++++.+.+|+.|+.++.++|+++|.+++++   +|+++.++ +++|..|..++++|+.+||+++++|+++|+++
T Consensus       142 ~yiR~~v~~~~~~~G~~p~~~~~~~i~~~P~~~~~~~g~~~v~l~~~-~~~R~~p~~~~~~K~~~NYl~~vla~~eA~~~  220 (358)
T 3uzo_A          142 LYLRPFVIGVGDNIGVRTAPEFIFSVFCVPVGPYFKGGLTPTNFITS-DYDRAAPHGTGAAKVGGNYAASLLPGYEAKKR  220 (358)
T ss_dssp             EEEEEEEEEESSCCSSSCCSEEEEEEEEEEECCSSCSSSCCEEEECC-SCCSSCTTSSTTSCBHHHHHHHHHHHHHHHHT
T ss_pred             EEEEEEEEecCCccccCCCCCeEEEEEEecChhhhhcCCccEEEEEE-eeeccCCCccccccchhhhHHHHHHHHHHHHc
Confidence            599999999888899998778899999999988765   56888877 47898888889999656999999999999999


Q ss_pred             CCCeEEEEcCC--CcEEEeCceEEEEEE-CCE-EEccCCCCCCcccchHHHHHHHHHH-cCCcEEEEecCHHHHhhhhhh
Q 028343           78 GFTDVLFLNAE--KYIEEVSTSNIFLVK-GNE-ISTPPTSGTILPGITRKSIIEITHV-LGYQVKERAIPVEELFDAEEV  152 (210)
Q Consensus        78 g~deal~ld~~--g~v~E~~~sNlf~~~-~~~-l~TP~l~~~~L~GitR~~vl~~a~~-~gi~v~e~~i~~~el~~ade~  152 (210)
                      |+||+||+|.+  |+|+|++++|+|+++ ||+ |+||+ +.++|+||||+.||++|++ +|++|+|++++++||.+|||+
T Consensus       221 G~~e~l~ld~~~~g~V~E~~~sNif~v~~dg~~l~TP~-~~~iL~GItR~~vl~la~~~~g~~v~e~~i~~~eL~~adEv  299 (358)
T 3uzo_A          221 DFADVIYLDPATHTTIEEAGAANFFAITQDGQKFVTPQ-SPSILPSITKYSLLWLAEHRLGLEVEEGDIRIDELGKFSEA  299 (358)
T ss_dssp             TCSEECCBCTTTSCBBCBCSSSEEEEEETTSCEEEEEC-CTTSCCCHHHHHHHHHHHHTTCCEEEEECCBTTCGGGEEEE
T ss_pred             CCCEEEEEeCCCCCeEEEcCCeeEEEEECCCeEEEECC-cCCcccCHHHHHHHHHHHhhcCCeEEEEECCHHHHHhhcce
Confidence            99999999985  999999999999995 788 99999 8999999999999999999 999999999999999999999


Q ss_pred             hhcccccceEEEEEEEecCeEEeec--CCccHHHHHHHHHHHHhHccCCCCCCCCeEeC
Q 028343          153 FCTGTAVGVNSVNSITYQDERIEYK--RGAGTVGQKLYEMVTGIQTGRIEDKMGWTVEL  209 (210)
Q Consensus       153 f~tns~~gi~pV~~I~~~~~~i~~~--~~~g~~t~~L~~~~~~~~~g~~~~~~~w~~~~  209 (210)
                      |+|||+.+|+||.+|+..++.+.+.  +++||++++|+++|.++++|+.+|++||+++|
T Consensus       300 f~t~t~~~i~PV~~Id~~~~~~~i~~~~~~Gpvt~~L~~~~~~iq~g~~~~~~~W~~~v  358 (358)
T 3uzo_A          300 GACGTAAVITPIGGIQHGDDFHVFYSESEPGPVTRRLYDELVGIQYGDKEAPEGWIVKV  358 (358)
T ss_dssp             EEECTTTSSEEEEEEEETTEEEESSCSSSCCHHHHHHHHHHHHHHTTSSCCCTTCCEEC
T ss_pred             eEEcCcceEEEEEEECcccceeEeCCCCCcCHHHHHHHHHHHHHHcCCCCCCCCCceEC
Confidence            9999999999999998655443343  24899999999999999999999999999986

>2eiy_A ILVE, branched-chain amino acid aminotransferase; PLP-dependent enzyme; HET: PLP; 1.35A {Thermus thermophilus} PDB: 1wrv_A* 2ej0_A* 2ej2_A* 2ej3_A*

Probab=100.00  E-value=2.9e-48  Score=335.20  Aligned_cols=204  Identities=34%  Similarity=0.430  Sum_probs=182.7

Q ss_pred             CeEEEEEEecCCCcCcCCC--CCcEEEEEEEecCCCc-----CCceEEEEEeeeeecCCC-CCCCCccccChHHHHHHHH
Q 028343            1 MYIRPLLMGSGPVLGVAPA--SEYTFITYASPVGNYH-----KGLLNLIVEEKFRRAIPG-GTGGVKAVTNYAIIYKPIA   72 (210)
Q Consensus         1 ~yiR~~~~g~~~~~g~~~~--~~~~~~i~~~p~~~~~-----~~g~~~~~~~~~~r~~~~-~l~~~K~~~~y~~~~~a~~   72 (210)
                      .|||++++++.+.+|+.|+  .+++++|++.|+++++     .+|+++.+++ ++|..++ .++++|+++||+.++++++
T Consensus        94 ~~iR~~v~~g~~~~~~~p~~~~~~~~~i~~~p~~~~~~~~~~~~gv~l~~~~-~~r~~~~~~~~~~Kt~~ny~~~~la~~  172 (308)
T 2eiy_A           94 CYIRPLAWMGAKALGVNPLPNNPAEVMVAAWEWGAYLGEEAVRKGARLITSS-WARFPANVMPGKAKVGGNYVNSALAKM  172 (308)
T ss_dssp             EEEEEEEECCSSCCSSCCGGGCSCEEEEEEEEC--------CCSCEEEEECS-SCBCCTTTSCTTSCBGGGHHHHHHHHH
T ss_pred             EEEEEEEEecCCccCcCCCCCCCeEEEEEEEEcCccCCcccccCCeEEEEec-ceecCCCCcCcceehhhhHHHHHHHHH
Confidence            4899999988778888765  5789999999987643     3689998874 5676665 4589999866999999999


Q ss_pred             HHHHCCCCeEEEEcCCCcEEEeCceEEEEEECCEEEccCCCCCCcccchHHHHHHHHHHcCCcEEEEecCHHHHhhhhhh
Q 028343           73 EAKAKGFTDVLFLNAEKYIEEVSTSNIFLVKGNEISTPPTSGTILPGITRKSIIEITHVLGYQVKERAIPVEELFDAEEV  152 (210)
Q Consensus        73 ea~~~g~deal~ld~~g~v~E~~~sNlf~~~~~~l~TP~l~~~~L~GitR~~vl~~a~~~gi~v~e~~i~~~el~~ade~  152 (210)
                      +|+++|+||+||+|++|+|+|++++|||+++||+|+||+++. +|+||||+.||++|+++|++|+|++++++||.+|||+
T Consensus       173 ~A~~~G~de~l~ld~~G~V~Egs~sNif~v~~g~l~TP~~~~-iL~GitR~~ll~~a~~~g~~v~E~~i~~~dL~~adev  251 (308)
T 2eiy_A          173 EAVAAGADEALLLDEEGYVAEGSGENLFFVRDGVIYALEHSV-NLEGITRDSVIRIAKDLGYEVQVVRATRDQLYMADEV  251 (308)
T ss_dssp             HHHHTTCSEEEEEBTTSSEEEESSCEEEEEETTEEEEECCTT-SCCCHHHHHHHHHHHHTTCCEEEECCCHHHHHTCSEE
T ss_pred             HHHHcCCCEEEEECCCCeEEEcCceEEEEEECCEEEeCCcCC-CCchHHHHHHHHHHHHCCCeEEEEeCCHHHHhhCCEE
Confidence            999999999999999999999999999999999999999988 9999999999999999999999999999999999999


Q ss_pred             hhcccccceEEEEEEEecCeEEeecCCccHHHHHHHHHHHHhHccCCCCCCCCeEeC
Q 028343          153 FCTGTAVGVNSVNSITYQDERIEYKRGAGTVGQKLYEMVTGIQTGRIEDKMGWTVEL  209 (210)
Q Consensus       153 f~tns~~gi~pV~~I~~~~~~i~~~~~~g~~t~~L~~~~~~~~~g~~~~~~~w~~~~  209 (210)
                      |+|||++||+||.+|+  ++.++ .+++||++++|+++|.++++|+.+++++|+++|
T Consensus       252 fltns~~gv~pV~~id--~~~~~-~g~~g~~~~~l~~~~~~~~~~~~~~~~~w~~~v  305 (308)
T 2eiy_A          252 FMTGTAAEVTPVSMID--WRPIG-KGTAGPVALRLREVYLEAVTGRRPEYEGWLTYV  305 (308)
T ss_dssp             EEEETTTEEEEEEEET--TEECT-TSSCCHHHHHHHHHHHHHHTTCCGGGGGGEEEC
T ss_pred             EEccCcceEEEEEEEc--CEECC-CCCCCHHHHHHHHHHHHHHcCCCCCccCCCeeC
Confidence            9999999999999995  77753 456899999999999999999999999999997

>2a1h_A Branched chain aminotransferase; fold type IV; HET: PLP GBN; 1.80A {Homo sapiens} SCOP: e.17.1.1 PDB: 1ekp_A* 1ekv_A* 1ekf_A* 1kta_A* 1kt8_A* 2hhf_B* 2hhf_A* 2hgw_A* 2hg8_A* 2hgx_A* 2hdk_A*

Probab=100.00  E-value=3.3e-48  Score=342.17  Aligned_cols=207  Identities=32%  Similarity=0.554  Sum_probs=188.1

Q ss_pred             CeEEEEEEecCCCcCcCCCCCcEEEEEEEecCCCcC----CceEEEEEeeeeecCCCCCCCCccccChHHHHHHHHHHHH
Q 028343            1 MYIRPLLMGSGPVLGVAPASEYTFITYASPVGNYHK----GLLNLIVEEKFRRAIPGGTGGVKAVTNYAIIYKPIAEAKA   76 (210)
Q Consensus         1 ~yiR~~~~g~~~~~g~~~~~~~~~~i~~~p~~~~~~----~g~~~~~~~~~~r~~~~~l~~~K~~~~y~~~~~a~~ea~~   76 (210)
                      +||||+++++++.+|+.|+.+++++|+++|+++++.    +|+++.+++.+.|..++.++++|+.+||+.+++++++|++
T Consensus       140 ~yiR~~~~~~~~~~g~~p~~~~~~~i~~~p~~~~~~~g~~~~v~l~~~~~~~R~~~~~~~~~Kt~~ny~~~~la~~eA~~  219 (365)
T 2a1h_A          140 LYVRPVLIGNEPSLGVSQPRRALLFVILCPVGAYFPGGSVTPVSLLADPAFIRAWVGGVGNYKLGGNYGPTVLVQQEALK  219 (365)
T ss_dssp             EEEEEEEEECCBCCSCSCCSEEEEEEEEEEECCSSSSSSCCCEEEEECTTCCSCCTTSSTTSCBGGGTTTHHHHHHHHHH
T ss_pred             EEEEEEEEecCCccCCCCCCCcEEEEEEEECccccccccccceEEEEccccccCCCCccchhchhhccHHHHHHHHHHHH
Confidence            499999998888899988778999999999988764    4699988765678788888999985699999999999999


Q ss_pred             CCCCeEEEE-cCCCcEEEeCceEEEEEE---CCE--EEccCCCCCCcccchHHHHHHHHHHc-CCcEEEEecCHHHHhhh
Q 028343           77 KGFTDVLFL-NAEKYIEEVSTSNIFLVK---GNE--ISTPPTSGTILPGITRKSIIEITHVL-GYQVKERAIPVEELFDA  149 (210)
Q Consensus        77 ~g~deal~l-d~~g~v~E~~~sNlf~~~---~~~--l~TP~l~~~~L~GitR~~vl~~a~~~-gi~v~e~~i~~~el~~a  149 (210)
                      +|+||+||+ |.+|+|+|++++|||+++   ||+  |+||+++.++|+||||+.||++|+++ |++|+|+.++++||.+|
T Consensus       220 ~G~de~L~l~d~~G~V~E~~~sNif~v~~~~dg~~~l~TP~l~~~iL~GITR~~vl~la~~~~G~~v~Er~i~~~eL~~A  299 (365)
T 2a1h_A          220 RGCEQVLWLYGPDHQLTEVGTMNIFVYWTHEDGVLELVTPPLNGVILPGVVRQSLLDMAQTWGEFRVVERTITMKQLLRA  299 (365)
T ss_dssp             TTCSEEEEEETTTTEEEEETTEEEEEEEECTTSCEEEEECCCSSSSCCCHHHHHHHHHHHHHTSSEEEECCCBHHHHHHH
T ss_pred             cCCCeEEEEECCCCeEEEcCceEEEEEEecCCCcEEEEeCCCCCCccccHHHHHHHHHHHhcCCCceEEEeCCHHHHHHH
Confidence            999999999 889999999999999996   676  99999999999999999999999995 99999999999999999


Q ss_pred             ------hhhhhcccccceEEEEEEEecCeEEee--cCCccHHHHHHHHHHHHhHccCCCCCCCCeEeC
Q 028343          150 ------EEVFCTGTAVGVNSVNSITYQDERIEY--KRGAGTVGQKLYEMVTGIQTGRIEDKMGWTVEL  209 (210)
Q Consensus       150 ------de~f~tns~~gi~pV~~I~~~~~~i~~--~~~~g~~t~~L~~~~~~~~~g~~~~~~~w~~~~  209 (210)
                            ||+|+|||+++|+||.+|+++++.+.+  ++++||++++|+++|.++++|+.+  ++|+++|
T Consensus       300 ~~~g~~dEvf~tnt~~~i~PV~~i~~~~~~~~~~~~g~~g~vt~~L~~~~~~~~~g~~~--~~W~~~v  365 (365)
T 2a1h_A          300 LEEGRVREVFGSGTACQVCPVHRILYKDRNLHIPTMENGPELILRFQKELKEIQYGIRA--HEWMFPV  365 (365)
T ss_dssp             HHTTCEEEEEEEETTTEEEEEEEEEETTEEEECTTGGGTTHHHHHHHHHHHHHHTTSSC--CTTEEEC
T ss_pred             HhcCCccEEEEcCCeeEEEEEEEEEeCCeEEeeCCCCCcCHHHHHHHHHHHHHHcCCCC--CCCeeeC
Confidence                  999999999999999999876887654  345799999999999999999987  8999986

>2coi_A Branched chain aminotransferase 1, cytosolic; PLP-dependent enzyme; HET: PLP GBN; 1.90A {Homo sapiens} PDB: 2cog_A* 2coj_A* 2abj_A*

Probab=100.00  E-value=1.7e-47  Score=339.54  Aligned_cols=208  Identities=37%  Similarity=0.608  Sum_probs=187.7

Q ss_pred             CeEEEEEEecCCCcCcCCCCCcEEEEEEEecCCCcC----CceEEEEEeeeeecCCCCCCCCccccChHHHHHHHHHHHH
Q 028343            1 MYIRPLLMGSGPVLGVAPASEYTFITYASPVGNYHK----GLLNLIVEEKFRRAIPGGTGGVKAVTNYAIIYKPIAEAKA   76 (210)
Q Consensus         1 ~yiR~~~~g~~~~~g~~~~~~~~~~i~~~p~~~~~~----~g~~~~~~~~~~r~~~~~l~~~K~~~~y~~~~~a~~ea~~   76 (210)
                      +||||+++|+++.+|+.|+.+++++|+++|.++++.    +|+++.+++...|..|..++.+|+.+||+.+++++++|++
T Consensus       160 ~yiR~~~~~~~~~~g~~p~~~~~~~i~~~p~~~y~~~~~~~~v~l~~~~~~~r~~p~~~g~~K~~~Ny~~~~la~~eA~~  239 (386)
T 2coi_A          160 LYIRPTFIGTEPSLGVKKPTKALLFVLLSPVGPYFSSGTFNPVSLWANPKYVRAWKGGTGDCKMGGNYGSSLFAQCEAVD  239 (386)
T ss_dssp             EEEEEEEEECCCSCSCSCCSEEEEEEEEEEECCCC-----CCEEEEECTTCCSCCTTSSTTSCCTHHHHTTHHHHHHHHT
T ss_pred             EEEEEEEEecCCccccCCCCCcEEEEEEEECcccccccccccEEEEEcccccccCCCcccccccccChHHHHHHHHHHHH
Confidence            499999998877889998888999999999988764    5799988765567777778899985699999999999999


Q ss_pred             CCCCeEEEEc-CCCcEEEeCceEEEEEE---CC--EEEccCCCCCCcccchHHHHHHHHHH-cCCcEEEEecCHHHHhhh
Q 028343           77 KGFTDVLFLN-AEKYIEEVSTSNIFLVK---GN--EISTPPTSGTILPGITRKSIIEITHV-LGYQVKERAIPVEELFDA  149 (210)
Q Consensus        77 ~g~deal~ld-~~g~v~E~~~sNlf~~~---~~--~l~TP~l~~~~L~GitR~~vl~~a~~-~gi~v~e~~i~~~el~~a  149 (210)
                      +|+||+||+| .+|+|+|++++|||+++   ||  +|+||+++.++|+||||+.||++|++ .|++|+|++++++||.+|
T Consensus       240 ~G~de~L~ld~~~g~V~E~~~sNiF~v~~~~~g~~~l~TP~l~~~iL~GITR~~vl~la~~~~G~~V~Er~i~~~eL~~A  319 (386)
T 2coi_A          240 NGCQQVLWLYGEDHQITEVGTMNLFLYWINEDGEEELATPPLDGIILPGVTRRCILDLAHQWGEFKVSERYLTMDDLTTA  319 (386)
T ss_dssp             TTCSEEEEEETTTTEEEEETTEEEEEEEECTTSCEEEEECCCSSSSCCCHHHHHHHHHHHHHCSSEEEECCCBHHHHHHH
T ss_pred             cCCCEEEEEECCCCEEEEeCCceEEEEEEcCCCCEEEEECCCCCCccHHHHHHHHHHHHHhccCCcEEEEECCHHHHHHH
Confidence            9999999999 79999999999999997   88  99999999999999999999999999 899999999999999999


Q ss_pred             ------hhhhhcccccceEEEEEEEecCeEEeec--CCccHHHHHHHHHHHHhHccCCCCCCCCeEeCC
Q 028343          150 ------EEVFCTGTAVGVNSVNSITYQDERIEYK--RGAGTVGQKLYEMVTGIQTGRIEDKMGWTVELD  210 (210)
Q Consensus       150 ------de~f~tns~~gi~pV~~I~~~~~~i~~~--~~~g~~t~~L~~~~~~~~~g~~~~~~~w~~~~~  210 (210)
                            ||+|+|||+.+|+||.+|++.++.+.+.  +++||++++|++.|.++++|+.+  ++|+++|+
T Consensus       320 ~~~g~~dEvF~tgTa~~i~PV~~I~~~~~~~~~~~~g~~g~vt~~L~~~l~~iq~g~~~--~~W~~~v~  386 (386)
T 2coi_A          320 LEGNRVREMFGSGTACVVCPVSDILYKGETIHIPTMENGPKLASRILSKLTDIQYGREE--RDWTIVLS  386 (386)
T ss_dssp             HTTTCEEEEEEEETTTEEEEEEEEEESSSEEECGGGGGTTHHHHHHHHHHHHHHTTSSC--CTTEEEC-
T ss_pred             HhcCCccEEEEecceeEEEEEEEEeeCCeEEecCCCCCcCHHHHHHHHHHHHHhCCCCC--CCCeEeCC
Confidence                  9999999999999999998767777542  34799999999999999999987  69999985

>1i2k_A 4-amino-4-deoxychorismate lyase; pyridoxal phosphate, PABC; HET: PLP; 1.79A {Escherichia coli} SCOP: e.17.1.1 PDB: 1et0_A* 1i2l_A*

Probab=100.00  E-value=3.1e-44  Score=304.59  Aligned_cols=185  Identities=19%  Similarity=0.192  Sum_probs=167.6

Q ss_pred             CeEEEEEEecCCCcCcCCC--CCcEEEEEEEecCCCc----CCceEEEEEeeeeecCCCCCCCCccccChHHHHHHHHHH
Q 028343            1 MYIRPLLMGSGPVLGVAPA--SEYTFITYASPVGNYH----KGLLNLIVEEKFRRAIPGGTGGVKAVTNYAIIYKPIAEA   74 (210)
Q Consensus         1 ~yiR~~~~g~~~~~g~~~~--~~~~~~i~~~p~~~~~----~~g~~~~~~~~~~r~~~~~l~~~K~~~~y~~~~~a~~ea   74 (210)
                      .|||++++++.+++|+.|+  .+|++++.+.|+++++    .+|+++.++ +.+|..++.++++|++ ||+.+++++++|
T Consensus        77 ~~iR~~v~~g~~~~g~~p~~~~~~~~~i~~~p~~~~~~~~~~~g~~l~~~-~~~~~~~~~~~~~Kt~-n~~~~~~a~~~A  154 (269)
T 1i2k_A           77 GVLKVVISRGSGGRGYSTLNSGPATRILSVTAYPAHYDRLRNEGITLALS-PVRLGRNPHLAGIKHL-NRLEQVLIRSHL  154 (269)
T ss_dssp             EEEEEEEECCSCCSTTCCTTCCCCEEEEEEECCCSHHHHHHHHCEEEEEC-SCCBCCCTTTTBCCBS-CCHHHHHHHHHH
T ss_pred             eEEEEEEEcCCCCCCCCCccCCCcEEEEEEEECCCcchhhhcCCeEEEEe-ceecCCCCcccCcchh-hhHHHHHHHHHH
Confidence            3899999988778888876  4789999999998743    378999887 4567666678999995 899999999999


Q ss_pred             HHCCCCeEEEEcCCCcEEEeCceEEEEEECCEEEccCCCCCCcccchHHHHHHHHHHcCCcEEEEecCHHHHhhhhhhhh
Q 028343           75 KAKGFTDVLFLNAEKYIEEVSTSNIFLVKGNEISTPPTSGTILPGITRKSIIEITHVLGYQVKERAIPVEELFDAEEVFC  154 (210)
Q Consensus        75 ~~~g~deal~ld~~g~v~E~~~sNlf~~~~~~l~TP~l~~~~L~GitR~~vl~~a~~~gi~v~e~~i~~~el~~ade~f~  154 (210)
                      +++|+||+||+|.+|+|+|++++|||+++||+|+||+++.++|+||||+.++++|+++|++|+|++++++||.+|||+|+
T Consensus       155 ~~~G~de~l~ld~~G~v~E~s~sNif~v~~g~l~TP~~~~~iL~GitR~~ll~~a~~~g~~v~e~~i~~~eL~~adevfl  234 (269)
T 1i2k_A          155 EQTNADEALVLDSEGWVTECCAANLFWRKGNVVYTPRLDQAGVNGIMRQFCIRLLAQSSYQLVEVQASLEESLQADEMVI  234 (269)
T ss_dssp             TTSSCSEEEEEBTTSBEEECSSSEEEEEETTEEEEECCSSSSBCCHHHHHHHHHHHHSSSEEEEECCBHHHHHTCSEEEE
T ss_pred             HHCCCCEEEEECCCCcEEEcCceEEEEEECCEEECCCCccCccCCHHHHHHHHHHHHcCCeEEEEECCHHHHhhCCEEEE
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cccccceEEEEEEEecCeEEeecCCccHHHHHHHHHHHH
Q 028343          155 TGTAVGVNSVNSITYQDERIEYKRGAGTVGQKLYEMVTG  193 (210)
Q Consensus       155 tns~~gi~pV~~I~~~~~~i~~~~~~g~~t~~L~~~~~~  193 (210)
                      |||++||+||.+|+  ++.+  .  .||++++|+++|..
T Consensus       235 tns~~gv~pV~~id--~~~~--~--~g~~~~~l~~~~~~  267 (269)
T 1i2k_A          235 CNALMPVMPVCACG--DVSF--S--SATLYEYLAPLCER  267 (269)
T ss_dssp             ECSSSCEEEEEEET--TEEC--C--CCHHHHHHHHHHHT
T ss_pred             cCChhheEEEEEEC--CEEe--c--CcHHHHHHHHHHhc
Confidence            99999999999995  7774  2  48999999999864

>3daa_A D-amino acid aminotransferase; pyridoxal phosphate, transaminase; HET: PDD; 1.90A {Bacillus SP} SCOP: e.17.1.1 PDB: 4daa_A* 3lqs_A* 1daa_A* 2daa_A* 5daa_A* 1g2w_A* 1a0g_A* 2dab_A*

Probab=100.00  E-value=5.6e-43  Score=298.39  Aligned_cols=185  Identities=22%  Similarity=0.212  Sum_probs=163.6

Q ss_pred             eEEEEEEecCCCcCcCCC---CCcEEEEEEEecCCCc---CCceEEEEEeeeeecCCCCCCCCccccChHHHHHHHHHHH
Q 028343            2 YIRPLLMGSGPVLGVAPA---SEYTFITYASPVGNYH---KGLLNLIVEEKFRRAIPGGTGGVKAVTNYAIIYKPIAEAK   75 (210)
Q Consensus         2 yiR~~~~g~~~~~g~~~~---~~~~~~i~~~p~~~~~---~~g~~~~~~~~~~r~~~~~l~~~K~~~~y~~~~~a~~ea~   75 (210)
                      |||+.++++.+++|+..+   .+|++++++.|++.+.   .+|+++.++++. |   ..++++||+ ||+.+++++++|+
T Consensus        86 ~lri~vtrG~~~r~~~~p~~~~~~~~~i~~~p~~~~~~~~~~gv~~~~~~~~-r---~~~~~~Kt~-nyl~~~la~~eA~  160 (277)
T 3daa_A           86 HIYFQVTRGTSPRAHQFPENTVKPVIIGYTKENPRPLENLEKGVKATFVEDI-R---WLRCDIKSL-NLLGAVLAKQEAH  160 (277)
T ss_dssp             EEEEEEESCBCSCCSSCCSSCCCCEEEEEEEECCCCHHHHHHCEEEEEEECC-C---CSCTTSCBS-CCHHHHHHHHHHH
T ss_pred             EEEEEEEecCCCcCCCCCCCCCCcEEEEEEEECCCChHHHhCCeEEEEecCc-c---ccCCCcchh-hhHHHHHHHHHHH
Confidence            789999977666777643   4789999999998532   279999887542 2   246799985 9999999999999


Q ss_pred             HCCCCeEEEEcCCCcEEEeCceEEEEEECCEEEccCCCCCCcccchHHHHHHHHHHcCCcEEEEecCHHHHhhhhhhhhc
Q 028343           76 AKGFTDVLFLNAEKYIEEVSTSNIFLVKGNEISTPPTSGTILPGITRKSIIEITHVLGYQVKERAIPVEELFDAEEVFCT  155 (210)
Q Consensus        76 ~~g~deal~ld~~g~v~E~~~sNlf~~~~~~l~TP~l~~~~L~GitR~~vl~~a~~~gi~v~e~~i~~~el~~ade~f~t  155 (210)
                      ++|+||+||+| +|+|+|++++|+|+++||+|+|||++.++|+||||+.++++|+++|++|+|++++++||.+|||+|+|
T Consensus       161 ~~g~~e~l~l~-~g~v~E~~~sNif~~~~~~l~TP~~~~~iL~GitR~~vl~~~~~~g~~v~e~~i~~~el~~adevf~~  239 (277)
T 3daa_A          161 EKGCYEAILHR-NNTVTEGSSSNVFGIKDGILYTHPANNMILKGITRDVVIACANEINMPVKEIPFTTHEALKMDELFVT  239 (277)
T ss_dssp             HTTCSEEEEEE-TTEEEEETTBEEEEEETTEEEECCSSTTSCCCHHHHHHHHHHHHTTCCEECCCCBHHHHHTCSEEEEE
T ss_pred             HCCCCEEEEEc-CCEEEEcCceEEEEEECCEEECCCCcCCCCccHHHHHHHHHHHHcCCeEEEEeCCHHHHHhcCeeeee
Confidence            99999999997 89999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ccccceEEEEEEEecCeEEeecCCccHHHHHHHHHHHHhH
Q 028343          156 GTAVGVNSVNSITYQDERIEYKRGAGTVGQKLYEMVTGIQ  195 (210)
Q Consensus       156 ns~~gi~pV~~I~~~~~~i~~~~~~g~~t~~L~~~~~~~~  195 (210)
                      ||++||+||.+|+  ++.++ ++++||+|++|+++|.+.+
T Consensus       240 ns~~~i~pV~~id--~~~~~-~g~~g~~t~~L~~~~~~~i  276 (277)
T 3daa_A          240 STTSEITPVIEID--GKLIR-DGKVGEWTRKLQKQFETKI  276 (277)
T ss_dssp             ETTTEEEEEEEET--TEEST-TSSCCHHHHHHHHHHHTTC
T ss_pred             cChhhEEEEEEEC--CEECC-CCCcCHHHHHHHHHHHHhc
Confidence            9999999999995  77753 4568999999999998753

>3lul_A 4-amino-4-deoxychorismate lyase; structural genomi center for structural genomics, JCSG, protein structure INI PSI-2, pyridoxal phosphate; HET: MSE LLP; 1.78A {Legionella pneumophila}

Probab=100.00  E-value=1.9e-42  Score=294.39  Aligned_cols=183  Identities=25%  Similarity=0.321  Sum_probs=161.8

Q ss_pred             eEEEEEEecCCCcCcCCCC--CcEEEEEEEecCCCcCCceEEEEEeeeeecCCCCCCCCccccChHHHHHHHHHHHHCCC
Q 028343            2 YIRPLLMGSGPVLGVAPAS--EYTFITYASPVGNYHKGLLNLIVEEKFRRAIPGGTGGVKAVTNYAIIYKPIAEAKAKGF   79 (210)
Q Consensus         2 yiR~~~~g~~~~~g~~~~~--~~~~~i~~~p~~~~~~~g~~~~~~~~~~r~~~~~l~~~K~~~~y~~~~~a~~ea~~~g~   79 (210)
                      |||++++++.+.+|+.++.  .|+++++ .|+++. ..++++.++ +++|..++.++++||+ ||+++++++++|+++|+
T Consensus        85 ~irl~v~rg~~~~g~~~~~~~~~~~~~~-~p~~~~-~~~v~l~~~-~~~r~~~~~~~~~Kt~-nyl~~~la~~~A~~~G~  160 (272)
T 3lul_A           85 GIKAILSGGPASRGLAERGQVSQLIFQT-FNYSIQ-KHPVRLISI-NWLRDKANPLYQLKSV-NYLEAIIAQRQAIAVGA  160 (272)
T ss_dssp             EEEEEEECCBCCSSTTCCCSSEEEEEEE-ECCCCC-CSCEEEEEE-EEEECTTCGGGGSCBS-CCHHHHHHHHHHHHTTC
T ss_pred             EEEEEEEecCCccCcCCCCCCCcEEEEE-ECCCCc-cccEEEEEE-eEEecCCCcccchhhh-ccHHHHHHHHHHHHcCC
Confidence            8999999887788998764  4677666 665432 245888776 6788877788999995 99999999999999999


Q ss_pred             CeEEEEcCCCcEEEeCceEEEEEECCEEEccCCCCCCcccchHHHHHHHHHHcCCcEEEEecCHHHHhhhhhhhhccccc
Q 028343           80 TDVLFLNAEKYIEEVSTSNIFLVKGNEISTPPTSGTILPGITRKSIIEITHVLGYQVKERAIPVEELFDAEEVFCTGTAV  159 (210)
Q Consensus        80 deal~ld~~g~v~E~~~sNlf~~~~~~l~TP~l~~~~L~GitR~~vl~~a~~~gi~v~e~~i~~~el~~ade~f~tns~~  159 (210)
                      ||+||+|.+|+|+|++++|+|+++||+|+|||++.++|+||||+.++++|+++|++|+|++++++||.+|||+|+|||++
T Consensus       161 de~L~ld~~g~v~E~~~sNif~~~~g~l~TP~l~~~iL~GitR~~ll~la~~~g~~v~e~~i~~~el~~adevf~~ns~~  240 (272)
T 3lul_A          161 DDALFFNTENHVTETTCANLFLIENNILYTPRVEDGILPGITRARLISHCQQHKMSVQEISLTKKRIEDADAVFLTNSLQ  240 (272)
T ss_dssp             SEEEEEETTSBEEEESSCEEEEEETTEEEECCGGGTCCCCHHHHHHHHHHHHTTCCEEECCCBHHHHHTCSEEEEEETTT
T ss_pred             CEEEEECCCCeEEEcCCeEEEEEECCEEECCCCccCcCcCHHHHHHHHHHHHcCCeEEEEECCHHHHhhCCEEEEEcCch
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ceEEEEEEEecCeEEeecCCccHHHHHHHHHHHHhHcc
Q 028343          160 GVNSVNSITYQDERIEYKRGAGTVGQKLYEMVTGIQTG  197 (210)
Q Consensus       160 gi~pV~~I~~~~~~i~~~~~~g~~t~~L~~~~~~~~~g  197 (210)
                      ||+||++|+  ++.+  +  .   |++|+++|.+..+.
T Consensus       241 ~v~PV~~id--~~~~--~--~---t~~l~~~y~~~~~~  269 (272)
T 3lul_A          241 GIRRVLSLD--NIIF--E--V---NHPIIDKLIFLLNQ  269 (272)
T ss_dssp             EEEEEEEET--TEEC--C--C---CCHHHHHHHHHHHH
T ss_pred             hEEEEEEEC--CEEc--c--h---HHHHHHHHHHHHhh
Confidence            999999994  7774  2  2   88999999876543

>3csw_A BCAT, putative branched-chain-amino-acid aminotransfera; TM0831, putative branched-chain amino acid aminotransferase; HET: PLP CIT; 2.15A {Thermotoga maritima MSB8}

Probab=100.00  E-value=9.3e-42  Score=291.86  Aligned_cols=187  Identities=27%  Similarity=0.312  Sum_probs=162.7

Q ss_pred             CeEEEEEEecCCCcCcCCCCCcEEEEEEEecCCCc-CCceEEEEEeeeeecCCC-CCCCCccccChHHHHHHHHHHHHCC
Q 028343            1 MYIRPLLMGSGPVLGVAPASEYTFITYASPVGNYH-KGLLNLIVEEKFRRAIPG-GTGGVKAVTNYAIIYKPIAEAKAKG   78 (210)
Q Consensus         1 ~yiR~~~~g~~~~~g~~~~~~~~~~i~~~p~~~~~-~~g~~~~~~~~~~r~~~~-~l~~~K~~~~y~~~~~a~~ea~~~g   78 (210)
                      .|||+++..    .|      .++++.+.|+++++ .+|+++.++ +.++.... .++++|++ ||+++++++++|++  
T Consensus        96 ~~iR~~v~~----~~------~~~~i~~~p~~~~~~~~~~~l~~~-~~~~~~~~~~~~~~Kt~-~~l~~~la~~~A~~--  161 (285)
T 3csw_A           96 VRIKVYLFP----DS------GEVLFVFSPLNIPDLETGVEVKIS-NVRRIPDLSTPPALKIT-GRTDIVLARREIVD--  161 (285)
T ss_dssp             EEEEEEECT----TT------CCEEEEEEECCCCCCTTCEEEEEC-SSCCCCTTTSCTTCCBT-TCHHHHHHHTTCSS--
T ss_pred             eEEEEEEEc----CC------CEEEEEEEeCCCccccCCeEEEEE-eEEecCCCCCCCccchh-ccHHHHHHHHHHHh--
Confidence            389998821    11      16788899998765 579999887 45553332 35799997 69999999998877  


Q ss_pred             CCeEEEEcCCCcEEEeCceEEEEEECCEEEccCCCCCCcccchHHHHHHHHHHcCCcEEEEecCHHHHhhhhhhhhcccc
Q 028343           79 FTDVLFLNAEKYIEEVSTSNIFLVKGNEISTPPTSGTILPGITRKSIIEITHVLGYQVKERAIPVEELFDAEEVFCTGTA  158 (210)
Q Consensus        79 ~deal~ld~~g~v~E~~~sNlf~~~~~~l~TP~l~~~~L~GitR~~vl~~a~~~gi~v~e~~i~~~el~~ade~f~tns~  158 (210)
                      +||+||+|++|+|+|++++|||+++||+|+||+++.++|+||||+.++++|+++|++|+|++++++||.+|||+|+|||+
T Consensus       162 ~de~L~ld~~G~V~Egs~sNif~v~~g~l~TP~l~~~iL~GitR~~ll~~a~~~g~~v~E~~i~~~dL~~adevfltns~  241 (285)
T 3csw_A          162 CYDVILLGLNGQVCEGSFSNVFLVKEGKLITPSLDSGILDGITRENVIKLAKSLEIPVEERVVWVWELFEADEMFLTHTS  241 (285)
T ss_dssp             SSEEEEECTTSBEEEESSSEEEEEETTEEEEECGGGTCCCCHHHHHHHHHHHHTTCCEEEECCBHHHHHTCSEEEEEETT
T ss_pred             CCeEEEECCCCcEEEcCceEEEEEECCEEEeCCCCCCccCCHHHHHHHHHHHHCCCeEEEEeCCHHHHhhCCEEEEecCc
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cceEEEEEEEecCeEEeecCCccHHHHHHHHHHHHhHccCCCCCCCCeE
Q 028343          159 VGVNSVNSITYQDERIEYKRGAGTVGQKLYEMVTGIQTGRIEDKMGWTV  207 (210)
Q Consensus       159 ~gi~pV~~I~~~~~~i~~~~~~g~~t~~L~~~~~~~~~g~~~~~~~w~~  207 (210)
                      +||+||.+|+  ++.++ ++++||++++|+++|.++++|+.   ++|+.
T Consensus       242 ~gv~PV~~id--~~~~~-~g~~g~~t~~L~~~~~~~~~~~~---~~w~~  284 (285)
T 3csw_A          242 AGVVPVRRLN--EHSFF-EEEPGPVTATLMENFEPFVLNLE---ENWVG  284 (285)
T ss_dssp             TEEEEEEEET--TEESC-SSSCCHHHHHHHHHHHHHHHTCG---GGTTT
T ss_pred             ceEEEEEEEC--CEECC-CCCCCHHHHHHHHHHHHHHhCcC---CCCCC
Confidence            9999999995  77753 45689999999999999999986   68874

>3sno_A Hypothetical aminotransferase; D-aminoacid aminotransferase-like PLP-dependent enzymes, STR genomics; HET: MSE; 1.60A {Corynebacterium glutamicum}

Probab=100.00  E-value=3.6e-41  Score=291.91  Aligned_cols=180  Identities=23%  Similarity=0.367  Sum_probs=128.9

Q ss_pred             CeEEEEEEecCCCcCcCCCCCcEEEEEEEecCCCc----CCceEEEEEeeeee-----------------------cCCC
Q 028343            1 MYIRPLLMGSGPVLGVAPASEYTFITYASPVGNYH----KGLLNLIVEEKFRR-----------------------AIPG   53 (210)
Q Consensus         1 ~yiR~~~~g~~~~~g~~~~~~~~~~i~~~p~~~~~----~~g~~~~~~~~~~r-----------------------~~~~   53 (210)
                      .|||++++++.+.+|     .|++++++.|+++++    .+|+++.+++. +.                       ..|.
T Consensus       107 ~~iRl~vtrG~~~~g-----~p~~~v~~~p~~~~~~~~~~~gv~~~~~~~-~~~~~~~~~~~~~~~r~~~s~~~~~~~p~  180 (315)
T 3sno_A          107 ASCTWTLSRGRSSTG-----LASGWLTITPVSSDKLAQREHGVSVMTSSR-GYSIDTGLPGIGKATRGELSKVERTPAPW  180 (315)
T ss_dssp             EEEEEEEECCBTTTC-----CCEEEEEEEECCHHHHHHHHHCEEEEEEEC------------------------------
T ss_pred             EEEEEEEEeCCCCCC-----CCEEEEEEEECCCcchhhhcCCEEEEEecc-ccccccccccccccccccccccccccCcc
Confidence            389999998766554     478899999987643    27999887742 11                       2233


Q ss_pred             CCCCCccccChHHHHHHHHHHHHCCCCeEEEEcCCCcEEEeCceEEEEEECCEEEccCCCCCCcccchHHHHHHHHHHcC
Q 028343           54 GTGGVKAVTNYAIIYKPIAEAKAKGFTDVLFLNAEKYIEEVSTSNIFLVKGNEISTPPTSGTILPGITRKSIIEITHVLG  133 (210)
Q Consensus        54 ~l~~~K~~~~y~~~~~a~~ea~~~g~deal~ld~~g~v~E~~~sNlf~~~~~~l~TP~l~~~~L~GitR~~vl~~a~~~g  133 (210)
                      .++++||+ ||+++++++++|+++|+||+||+|.+| |+|++++|+|+++||+|+|||++.++|+||||+.++++|+++|
T Consensus       181 ~l~~~Kt~-nyl~~vla~~~A~~~G~de~l~l~~~G-v~E~s~sN~f~~~~g~l~TPp~~~~iL~GitR~~ll~~a~~~g  258 (315)
T 3sno_A          181 LTVGAKTL-AYAANMAALRYAKSNGFDDVIFTDGDR-VLEGATSTVVSFKGDKIRTPSPGGDILPGTTQAALFAHATEKG  258 (315)
T ss_dssp             -------------------------CEEEEEEETTE-EEEESSSEEEEEETTEEEEECCC------HHHHHHHHHHHHTT
T ss_pred             cccCcchh-ccHHHHHHHHHHHHcCCCEEEEEeCCC-cEEcCCeeEEEEECCEEEcCCCCCCcChhHHHHHHHHHHHHcC
Confidence            46899997 999999999999999999999999999 9999999999999999999999999999999999999999999


Q ss_pred             CcEEEEecCHHHHhhhhhhhhcccccceEEEEEEEecCeEEeecCCccHHHHHHHHHHHHh
Q 028343          134 YQVKERAIPVEELFDAEEVFCTGTAVGVNSVNSITYQDERIEYKRGAGTVGQKLYEMVTGI  194 (210)
Q Consensus       134 i~v~e~~i~~~el~~ade~f~tns~~gi~pV~~I~~~~~~i~~~~~~g~~t~~L~~~~~~~  194 (210)
                      ++|+|+.++++||.+|||+|+|||++||+||++|+  ++.+    ..++++++|+++|++.
T Consensus       259 ~~v~e~~i~~~eL~~adevfl~ns~~gv~pV~~id--~~~~----~~~~~~~~l~~~~~~~  313 (315)
T 3sno_A          259 WRCKEKDLSIDDLFGADSVWLVSSVRGPVRVTRLD--GHKL----RKPDNEKEIKALITKA  313 (315)
T ss_dssp             CEEEEECCBHHHHHHSSEEEEEETTTEEEEEEEES--SSCC----CCCTTHHHHHHHHHHH
T ss_pred             CEEEEEECCHHHHHhCCeeEEEcCcccEEEEEEEC--CEEC----CCChHHHHHHHHHHHh
Confidence            99999999999999999999999999999999995  7764    3689999999999874

>3qqm_A MLR3007 protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-biology, transferase; HET: LLP; 2.30A {Mesorhizobium loti}

Probab=100.00  E-value=3.5e-36  Score=248.65  Aligned_cols=148  Identities=20%  Similarity=0.214  Sum_probs=134.0

Q ss_pred             CeEEEEEEecCCCcCcCCCCCcEEEEEEEecCCCcC-CceEEEEEeeeeecCCCCCCCCccccChHHHHHHHHHHHHCCC
Q 028343            1 MYIRPLLMGSGPVLGVAPASEYTFITYASPVGNYHK-GLLNLIVEEKFRRAIPGGTGGVKAVTNYAIIYKPIAEAKAKGF   79 (210)
Q Consensus         1 ~yiR~~~~g~~~~~g~~~~~~~~~~i~~~p~~~~~~-~g~~~~~~~~~~r~~~~~l~~~K~~~~y~~~~~a~~ea~~~g~   79 (210)
                      .|||+++++++           .+.+.+.|+++++. +|+++.+++ .++..++.++++|++ ||+.+.+++++|+++|+
T Consensus        71 ~~iR~~~~~~g-----------~~~i~~~p~~~~~~~~~~~l~~~~-~~~~~~~~~~~~Kt~-nr~~~~~a~~~a~~~g~  137 (221)
T 3qqm_A           71 MRTRLALARNG-----------DATASAQPYEPLAADKVWILRLAR-TRLDSQNTLLRHKTS-RRQLYTHARSEYLVTQA  137 (221)
T ss_dssp             EEEEEEEETTS-----------CEEEEEEECCCCCTTCCEEEEECS-CCBCTTCGGGGSCBS-CCHHHHHHHHTSCTTTC
T ss_pred             EEEEEEEEcCC-----------CEEEEEEcCCCCCCCCCEEEEEee-eEecCCCcchhchhc-chHHHHHHHHHHHhcCC
Confidence            48999999753           36788899887654 799998874 667777788999995 99999999999999999


Q ss_pred             CeEEEEcCCCcEEEeCceEEEEEEC-CEEEccCCCCCCcccchHHHHHHHHHHcCCcEEEEecCHHHHhhhhhhhhcccc
Q 028343           80 TDVLFLNAEKYIEEVSTSNIFLVKG-NEISTPPTSGTILPGITRKSIIEITHVLGYQVKERAIPVEELFDAEEVFCTGTA  158 (210)
Q Consensus        80 deal~ld~~g~v~E~~~sNlf~~~~-~~l~TP~l~~~~L~GitR~~vl~~a~~~gi~v~e~~i~~~el~~ade~f~tns~  158 (210)
                      ||+||+|++|+|+|++++|+|++++ |+|+|||++.++|+||||+.+++++     +++|++++++||.+|||+|+|||+
T Consensus       138 ~e~l~l~~~g~v~E~s~sNif~~~~~~~l~TP~~~~~~L~GitR~~ll~~~-----~v~e~~i~~~~L~~adevf~~ns~  212 (221)
T 3qqm_A          138 DEVLLANERGEICEGTITNVFADFGDGVLATPRLDCGLLPGVLRAELLDEG-----RAEEAIYSYDDLKSAKALFVGNSL  212 (221)
T ss_dssp             SEEEEEBTTSCEEEESSCEEEEECSSSCEEEECGGGTCCCCHHHHHHHHTT-----SEEEECCCHHHHTTCSEEEEEETT
T ss_pred             cEEEEECCCCeEEEcCceeEEEEeCCCEEECCCCccCcchHHHHHHHHhhC-----cEEEEeCCHHHHHhCCEEEEEecc
Confidence            9999999999999999999999998 9999999999999999999999974     899999999999999999999999


Q ss_pred             cceEEEEE
Q 028343          159 VGVNSVNS  166 (210)
Q Consensus       159 ~gi~pV~~  166 (210)
                      +||+||+-
T Consensus       213 ~gi~pV~l  220 (221)
T 3qqm_A          213 RGLIPAKL  220 (221)
T ss_dssp             TEEEEEEE
T ss_pred             eeEEEEEE
Confidence            99999974

>2zgi_A Putative 4-amino-4-deoxychorismate lyase; TTHA0621, PLP cofactor, pyridoxal enzyme, structural NPPSFA; HET: PLP PGE; 1.93A {Thermus thermophilus}

Probab=100.00  E-value=1.7e-35  Score=247.95  Aligned_cols=147  Identities=20%  Similarity=0.238  Sum_probs=129.6

Q ss_pred             CeEEEEEEecCCCcCcCCCCCcEEEEEEEecCCC----cCCceEEEEEeeeeecCCCCCCCCccccChHHHHHHHHHHHH
Q 028343            1 MYIRPLLMGSGPVLGVAPASEYTFITYASPVGNY----HKGLLNLIVEEKFRRAIPGGTGGVKAVTNYAIIYKPIAEAKA   76 (210)
Q Consensus         1 ~yiR~~~~g~~~~~g~~~~~~~~~~i~~~p~~~~----~~~g~~~~~~~~~~r~~~~~l~~~K~~~~y~~~~~a~~ea~~   76 (210)
                      .|||++++++++.+|+            .|.+..    +.+|+++.+++ . |..++ ++++|++ ||+.+++++++|++
T Consensus        79 ~~vR~~v~~g~~~~~~------------~p~~~~~~~~~~~g~~l~~~~-~-r~~~~-~~~~Kt~-n~~~~~~a~~~A~~  142 (246)
T 2zgi_A           79 LRLRFTVGEGVRLSEA------------RPYAPLPLSLYREGVRVRLTG-Y-RVHPD-LARYKTG-NYLPYRLALEEARK  142 (246)
T ss_dssp             EEEEEEEETTEEEEEE------------EECCCCCTHHHHHCBCEEEEE-E-ECCTT-TTTSCBS-CCHHHHHHHHHHHT
T ss_pred             EEEEEEEECCCCccCc------------CcCCCCchhHhhcCeEEEEec-c-cCCCC-Cccchhh-hhHHHHHHHHHHHH
Confidence            3899999976544444            233221    13689998875 4 66676 8899997 89999999999999


Q ss_pred             CCCCeEEEEcCCCcEEEeCceEEEEEECCEEEccCCCCCCcccchHHHHHHHHHHcCCcEEEEecCHHHHhhhhhhhhcc
Q 028343           77 KGFTDVLFLNAEKYIEEVSTSNIFLVKGNEISTPPTSGTILPGITRKSIIEITHVLGYQVKERAIPVEELFDAEEVFCTG  156 (210)
Q Consensus        77 ~g~deal~ld~~g~v~E~~~sNlf~~~~~~l~TP~l~~~~L~GitR~~vl~~a~~~gi~v~e~~i~~~el~~ade~f~tn  156 (210)
                      +|+||+||+|++|+|+|++++|+|+++||+|+||   .++|+||||+.++++|+++|++|+|++++++||.+  |+|+||
T Consensus       143 ~g~de~l~ld~~G~v~Egs~sNif~v~~g~l~TP---~~iL~GitR~~ll~~a~~~g~~v~E~~i~~~dL~~--evfltn  217 (246)
T 2zgi_A          143 EGAFEGLLLDAFGHVVDGSRTSPLLFREGTLYLL---EGGLEGITREKVAEAARGLGLRVERGLFRPEGLRG--HLLLAG  217 (246)
T ss_dssp             TTCSEEEEECTTSCEEEESSSEEEEEETTEEEEE---CSSCCCHHHHHHHHHHHHTTCEEEEECCCGGGCCS--EEEEEE
T ss_pred             cCCCEEEEECCCCCEEEcCCeEEEEEECCEEECC---CCccCcHHHHHHHHHHHHCCCeEEEEeCCHHHHHh--hHeeec
Confidence            9999999999999999999999999999999999   88999999999999999999999999999999998  999999


Q ss_pred             cccceEEEEEEE
Q 028343          157 TAVGVNSVNSIT  168 (210)
Q Consensus       157 s~~gi~pV~~I~  168 (210)
                      |++||+||.+|+
T Consensus       218 s~~gi~pV~~id  229 (246)
T 2zgi_A          218 SGVGLLPVRPPP  229 (246)
T ss_dssp             TTTEEEEBSSCC
T ss_pred             ChhheEEEEEEC
Confidence            999999999984

>3ceb_A D-aminoacid aminotransferase-like PLP-dependent E; joint center for structural genomics, protein structure initiative, PSI-2, lyase; HET: LLP; 2.40A {Haemophilus somnus}

Probab=99.96  E-value=9.7e-30  Score=205.79  Aligned_cols=100  Identities=17%  Similarity=0.229  Sum_probs=92.9

Q ss_pred             CCCCCCCCccccChHHHHHHHHHHHHCCCCeEEEEcCCCcEEEeCceEEEEEECCEEEccCCCCCCcccchHHHHHHHHH
Q 028343           51 IPGGTGGVKAVTNYAIIYKPIAEAKAKGFTDVLFLNAEKYIEEVSTSNIFLVKGNEISTPPTSGTILPGITRKSIIEITH  130 (210)
Q Consensus        51 ~~~~l~~~K~~~~y~~~~~a~~ea~~~g~deal~ld~~g~v~E~~~sNlf~~~~~~l~TP~l~~~~L~GitR~~vl~~a~  130 (210)
                      .++.++++|++ ||+  ++++++|+++|+||+||+ ++|+|+|++++|+|+++||+|+||+  .++|+||||+.+++   
T Consensus        95 ~~~~~~~~Kt~-n~~--~~~~~~A~~~g~de~l~l-~~G~v~E~s~sNif~~~~g~l~TP~--~~~L~GitR~~ll~---  165 (194)
T 3ceb_A           95 CDHIDYSLKFS-DRT--LLNNLLKQKEECDEIMII-RQGKVTDCSIGNLIFRQNNQWITPD--KPLLEGTQRAKLLE---  165 (194)
T ss_dssp             CSSCCCSSCBS-CCH--HHHHHHGGGTTSSEEEEE-ETTEECCCSSSEEEEEETTEEEEES--SCSSCCHHHHHHHH---
T ss_pred             CCCcchhhccc-CHH--HHHHHHHhhCCCCEEEEE-eCCEEEEeccEEEEEEECCEEECCC--CCCcChHHHHHHHc---
Confidence            45578899986 888  568889999999999999 8999999999999999999999999  78999999999998   


Q ss_pred             HcCCcEEEEecCHHHHhhhhhhhhcccccce
Q 028343          131 VLGYQVKERAIPVEELFDAEEVFCTGTAVGV  161 (210)
Q Consensus       131 ~~gi~v~e~~i~~~el~~ade~f~tns~~gi  161 (210)
                        +++|+|++++++||.+|||+|+|||++|+
T Consensus       166 --~~~v~e~~i~~~eL~~adevfl~ns~~gi  194 (194)
T 3ceb_A          166 --QKKIIAREIFFEDLAQYEEIRLINAMNGL  194 (194)
T ss_dssp             --TTSSEEECCBGGGGGGCSCEEEEBTTBCC
T ss_pred             --CCCEEEecCCHHHHhhccEEEEEecccCC
Confidence              57999999999999999999999999985

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	210
d1iyea_	304	e.17.1.1 (A:) Branched-chain aminoacid aminotransf	4e-35
d2a1ha1	363	e.17.1.1 (A:3-365) Branched-chain aminoacid aminot	5e-27
d1daaa_	277	e.17.1.1 (A:) D-aminoacid aminotransferase {Bacill	6e-19
d1i2ka_	269	e.17.1.1 (A:) Aminodeoxychorismate lyase {Escheric	8e-14

>d1iyea_ e.17.1.1 (A:) Branched-chain aminoacid aminotransferase {Escherichia coli [TaxId: 562]} Length = 304

class: Multi-domain proteins (alpha and beta)
fold: D-aminoacid aminotransferase-like PLP-dependent enzymes
superfamily: D-aminoacid aminotransferase-like PLP-dependent enzymes
family: D-aminoacid aminotransferase-like PLP-dependent enzymes
domain: Branched-chain aminoacid aminotransferase
species: Escherichia coli [TaxId: 562]

 Score =  123 bits (310), Expect = 4e-35
 Identities = 69/217 (31%), Positives = 109/217 (50%), Gaps = 10/217 (4%)

Query: 1   MYIRPLLMGSGPVLGVAPASEYTF--ITYASPVGNY-----HKGLLNLIVEEKFRRAIPG 53
            YIRPL+      +GV P + Y+   I  A P G Y      +  ++ +V    R A   
Sbjct: 91  AYIRPLIFVGDVGMGVNPPAGYSTDVIIAAFPWGAYLGAEALEQGIDAMVSSWNRAAPNT 150

Query: 54  GTGGVKAVTNYAIIYKPIAEAKAKGFTDVLFLNAEKYIEEVSTSNIFLVKGNEISTPPTS 113
                KA  NY       +EA+  G+ + + L+   YI E +  N+F VK   + TPP +
Sbjct: 151 IPTAAKAGGNYLSSLLVGSEARRHGYQEGIALDVNGYISEGAGENLFEVKDGVLFTPPFT 210

Query: 114 GTILPGITRKSIIEITHVLGYQVKERAIPVEELFDAEEVFCTGTAVGVNSVNSITYQDER 173
            + LPGITR +II++   LG +V+E+ +  E L+ A+EVF +GTA  +  V S+   D  
Sbjct: 211 SSALPGITRDAIIKLAKELGIEVREQVLSRESLYLADEVFMSGTAAEITPVRSV---DGI 267

Query: 174 IEYKRGAGTVGQKLYEMVTGIQTGRIEDKMGWTVELD 210
              +   G V +++ +   G+ TG  EDK GW  +++
Sbjct: 268 QVGEGRCGPVTKRIQQAFFGLFTGETEDKWGWLDQVN 304

>d2a1ha1 e.17.1.1 (A:3-365) Branched-chain aminoacid aminotransferase {Human (Homo sapiens), mitochondrial [TaxId: 9606]} Length = 363

class: Multi-domain proteins (alpha and beta)
fold: D-aminoacid aminotransferase-like PLP-dependent enzymes
superfamily: D-aminoacid aminotransferase-like PLP-dependent enzymes
family: D-aminoacid aminotransferase-like PLP-dependent enzymes
domain: Branched-chain aminoacid aminotransferase
species: Human (Homo sapiens), mitochondrial [TaxId: 9606]

 Score =  103 bits (257), Expect = 5e-27
 Identities = 69/226 (30%), Positives = 104/226 (46%), Gaps = 21/226 (9%)

Query: 2   YIRPLLMGSGPVLGVAPASEYTFITYASPVGNYHKGL----LNLIVEEKFRRAIPGGTGG 57
           Y+RP+L+G+ P LGV+            PVG Y  G     ++L+ +  F RA  GG G 
Sbjct: 139 YVRPVLIGNEPSLGVSQPRRALLFVILCPVGAYFPGGSVTPVSLLADPAFIRAWVGGVGN 198

Query: 58  VKAVTNYAIIYKPIAEAKAKGFTDVLFLNAEK-YIEEVSTSNIFLVKGNE-----ISTPP 111
            K   NY        EA  +G   VL+L      + EV T NIF+   +E     + TPP
Sbjct: 199 YKLGGNYGPTVLVQQEALKRGCEQVLWLYGPDHQLTEVGTMNIFVYWTHEDGVLELVTPP 258

Query: 112 TSGTILPGITRKSIIEITHVLG-YQVKERAIPVEELFDA------EEVFCTGTAVGVNSV 164
            +G ILPG+ R+S++++    G ++V ER I +++L  A       EVF +GTA  V  V
Sbjct: 259 LNGVILPGVVRQSLLDMAQTWGEFRVVERTITMKQLLRALEEGRVREVFGSGTACQVCPV 318

Query: 165 NSITYQDERIEYKRGA--GTVGQKLYEMVTGIQTGRIEDKMGWTVE 208
           + I Y+D  +          +  +  + +  IQ G       W   
Sbjct: 319 HRILYKDRNLHIPTMENGPELILRFQKELKEIQYGIRAH--EWMFP 362

>d1daaa_ e.17.1.1 (A:) D-aminoacid aminotransferase {Bacillus sp., strain YM-1 [TaxId: 1409]} Length = 277

class: Multi-domain proteins (alpha and beta)
fold: D-aminoacid aminotransferase-like PLP-dependent enzymes
superfamily: D-aminoacid aminotransferase-like PLP-dependent enzymes
family: D-aminoacid aminotransferase-like PLP-dependent enzymes
domain: D-aminoacid aminotransferase
species: Bacillus sp., strain YM-1 [TaxId: 1409]

 Score = 80.4 bits (197), Expect = 6e-19
 Identities = 42/182 (23%), Positives = 64/182 (35%), Gaps = 5/182 (2%)

Query: 8   MGSGPVLGVAPASEYTFITYASPVGNYHKGLLNLIVEEKFRRAIPGGTGGVKAVTNYAII 67
             S         +    I   +         L   V+  F   I      +K+  N    
Sbjct: 94  GTSPRAHQFPENTVKPVIIGYTKENPRPLENLEKGVKATFVEDIRWLRCDIKS-LNLLGA 152

Query: 68  YKPIAEAKAKGFTDVLFLNAEKYIEEVSTSNIFLVKGNEISTPPTSGTILPGITRKSIIE 127
                EA  KG      L+    + E S+SN+F +K   + T P +  IL GITR  +I 
Sbjct: 153 VLAKQEAHEKGC-YEAILHRNNTVTEGSSSNVFGIKDGILYTHPANNMILKGITRDVVIA 211

Query: 128 ITHVLGYQVKERAIPVEELFDAEEVFCTGTAVGVNSVNSITYQDERIEYKRGAGTVGQKL 187
             + +   VKE      E    +E+F T T   +  V  I   D ++      G   +KL
Sbjct: 212 CANEINMPVKEIPFTTHEALKMDELFVTSTTSEITPVIEI---DGKLIRDGKVGEWTRKL 268

Query: 188 YE 189
            +
Sbjct: 269 QK 270

>d1i2ka_ e.17.1.1 (A:) Aminodeoxychorismate lyase {Escherichia coli [TaxId: 562]} Length = 269

class: Multi-domain proteins (alpha and beta)
fold: D-aminoacid aminotransferase-like PLP-dependent enzymes
superfamily: D-aminoacid aminotransferase-like PLP-dependent enzymes
family: D-aminoacid aminotransferase-like PLP-dependent enzymes
domain: Aminodeoxychorismate lyase
species: Escherichia coli [TaxId: 562]

 Score = 66.2 bits (160), Expect = 8e-14
 Identities = 33/188 (17%), Positives = 62/188 (32%), Gaps = 8/188 (4%)

Query: 2   YIRPLLMGSGPVLGVAPASEYTFITYASPVGNYHKGLLNLIVEEK--FRRAIPGGTGGVK 59
            +       G       +   T I   +    ++  L N  +       R          
Sbjct: 80  KVVISRGSGGRGYSTLNSGPATRILSVTAYPAHYDRLRNEGITLALSPVRLGRNPHLAGI 139

Query: 60  AVTNYAIIYKPIAEAKAKGFTDVLFLNAEKYIEEVSTSNIFLVKGNEISTPPTSGTILPG 119
              N        +  +     + L L++E ++ E   +N+F  KGN + TP      + G
Sbjct: 140 KHLNRLEQVLIRSHLEQTNADEALVLDSEGWVTECCAANLFWRKGNVVYTPRLDQAGVNG 199

Query: 120 ITRKSIIEITHVLGYQVKERAIPVEELFDAEEVFCTGTAVGVNSVNSITYQDERIEYKRG 179
           I R+  I +     YQ+ E    +EE   A+E+      + V  V +     +       
Sbjct: 200 IMRQFCIRLLAQSSYQLVEVQASLEESLQADEMVICNALMPVMPVCAC---GDV---SFS 253

Query: 180 AGTVGQKL 187
           + T+ + L
Sbjct: 254 SATLYEYL 261

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	210
d1iyea_	304	Branched-chain aminoacid aminotransferase {Escheri	100.0
d2a1ha1	363	Branched-chain aminoacid aminotransferase {Human (	100.0
d1i2ka_	269	Aminodeoxychorismate lyase {Escherichia coli [TaxI	100.0
d1daaa_	277	D-aminoacid aminotransferase {Bacillus sp., strain	100.0

>d1iyea_ e.17.1.1 (A:) Branched-chain aminoacid aminotransferase {Escherichia coli [TaxId: 562]}

class: Multi-domain proteins (alpha and beta)
fold: D-aminoacid aminotransferase-like PLP-dependent enzymes
superfamily: D-aminoacid aminotransferase-like PLP-dependent enzymes
family: D-aminoacid aminotransferase-like PLP-dependent enzymes
domain: Branched-chain aminoacid aminotransferase
species: Escherichia coli [TaxId: 562]

Probab=100.00  E-value=1.1e-47  Score=327.82  Aligned_cols=204  Identities=33%  Similarity=0.553  Sum_probs=183.5

Q ss_pred             eEEEEEEecCCCcCcCCCC--CcEEEEEEEecCCCcC-----CceEEEEEeeeeecCCCC--CCCCccccChHHHHHHHH
Q 028343            2 YIRPLLMGSGPVLGVAPAS--EYTFITYASPVGNYHK-----GLLNLIVEEKFRRAIPGG--TGGVKAVTNYAIIYKPIA   72 (210)
Q Consensus         2 yiR~~~~g~~~~~g~~~~~--~~~~~i~~~p~~~~~~-----~g~~~~~~~~~~r~~~~~--l~~~K~~~~y~~~~~a~~   72 (210)
                      |||+.++++.+.+|+.++.  .+...+.+.|...+..     .|+++.+. .+.|..|..  +..+|+ +||+.++++++
T Consensus        92 ~vr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~~~~~-~~~r~~~~~~~~~~~k~-~n~~~~~~a~~  169 (304)
T d1iyea_          92 YIRPLIFVGDVGMGVNPPAGYSTDVIIAAFPWGAYLGAEALEQGIDAMVS-SWNRAAPNTIPTAAKAG-GNYLSSLLVGS  169 (304)
T ss_dssp             EEEEEEEECSSCSSSSCCTTCCEEEEEEEECCCCTTCTTHHHHCEEEEEC-SSCCCCTTTSCTTSCBG-GGHHHHHHHHH
T ss_pred             eEEEEeeecccccccCCccccccceeeccccccccCChhhccCceEEEEe-eccccCCCCcccccccc-cCccccchhhh
Confidence            8999999887788887663  6778888888765432     68888876 456766653  566787 59999999999


Q ss_pred             HHHHCCCCeEEEEcCCCcEEEeCceEEEEEECCEEEccCCCCCCcccchHHHHHHHHHHcCCcEEEEecCHHHHhhhhhh
Q 028343           73 EAKAKGFTDVLFLNAEKYIEEVSTSNIFLVKGNEISTPPTSGTILPGITRKSIIEITHVLGYQVKERAIPVEELFDAEEV  152 (210)
Q Consensus        73 ea~~~g~deal~ld~~g~v~E~~~sNlf~~~~~~l~TP~l~~~~L~GitR~~vl~~a~~~gi~v~e~~i~~~el~~ade~  152 (210)
                      +|+++|+||+||+|++|+|+|++++|+|+++||+++|||++.++|+||||+.|+++|++.|++++|++++++||.+|||+
T Consensus       170 ~A~~~g~deal~ld~~g~v~E~s~sNif~vk~~~l~TP~~~~~iL~GItR~~vi~~~~~~gi~v~e~~i~~~~L~~AdEv  249 (304)
T d1iyea_         170 EARRHGYQEGIALDVNGYISEGAGENLFEVKDGVLFTPPFTSSALPGITRDAIIKLAKELGIEVREQVLSRESLYLADEV  249 (304)
T ss_dssp             HHHHTTCSEEEEECTTSBEEEETTBEEEEEETTEEEECCGGGTCCCCHHHHHHHHHHHHTTCCEEECCCBTTHHHHCSEE
T ss_pred             HHHHcCCcceeeecccCeEeecCceeEEEEeCCEEEEeecccccCCchHHHHHHHHhhhcccceeeccCCHHHHHhhCHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhcccccceEEEEEEEecCeEEeecCCccHHHHHHHHHHHHhHccCCCCCCCCeEeCC
Q 028343          153 FCTGTAVGVNSVNSITYQDERIEYKRGAGTVGQKLYEMVTGIQTGRIEDKMGWTVELD  210 (210)
Q Consensus       153 f~tns~~gi~pV~~I~~~~~~i~~~~~~g~~t~~L~~~~~~~~~g~~~~~~~w~~~~~  210 (210)
                      |+|||++||+||++|+  ++.++ ++.+||+|++|+++|.++++|+++|.++|+++||
T Consensus       250 fltns~~gi~PV~~id--~~~~~-~g~~Gpit~~L~~~~~~i~~g~~~~~~~W~~~v~  304 (304)
T d1iyea_         250 FMSGTAAEITPVRSVD--GIQVG-EGRCGPVTKRIQQAFFGLFTGETEDKWGWLDQVN  304 (304)
T ss_dssp             EEEETTTEEEEEEEET--TEECT-TSSCCHHHHHHHHHHHGGGTTSSCCCSCCEEECC
T ss_pred             hhhCCCCeEEEEEEEC--CEEcC-CCCcCHHHHHHHHHHHHHHcCCCCCCCCCCeECC
Confidence            9999999999999994  88864 6778999999999999999999999999999997

>d2a1ha1 e.17.1.1 (A:3-365) Branched-chain aminoacid aminotransferase {Human (Homo sapiens), mitochondrial [TaxId: 9606]}

class: Multi-domain proteins (alpha and beta)
fold: D-aminoacid aminotransferase-like PLP-dependent enzymes
superfamily: D-aminoacid aminotransferase-like PLP-dependent enzymes
family: D-aminoacid aminotransferase-like PLP-dependent enzymes
domain: Branched-chain aminoacid aminotransferase
species: Human (Homo sapiens), mitochondrial [TaxId: 9606]

Probab=100.00  E-value=1.6e-44  Score=316.23  Aligned_cols=207  Identities=33%  Similarity=0.581  Sum_probs=179.3

Q ss_pred             CeEEEEEEecCCCcCcCCCCCcEEEEEEEecCCCcC----CceEEEEEeeeeecCCCCCCCCccccChHHHHHHHHHHHH
Q 028343            1 MYIRPLLMGSGPVLGVAPASEYTFITYASPVGNYHK----GLLNLIVEEKFRRAIPGGTGGVKAVTNYAIIYKPIAEAKA   76 (210)
Q Consensus         1 ~yiR~~~~g~~~~~g~~~~~~~~~~i~~~p~~~~~~----~g~~~~~~~~~~r~~~~~l~~~K~~~~y~~~~~a~~ea~~   76 (210)
                      +||||+++++++..|+.++.....++.+.|...++.    .+..+.+.+.+.|..+......|..+||+++++|+++|++
T Consensus       138 ~yiR~~v~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~k~~~ny~~~~la~~eA~~  217 (363)
T d2a1ha1         138 LYVRPVLIGNEPSLGVSQPRRALLFVILCPVGAYFPGGSVTPVSLLADPAFIRAWVGGVGNYKLGGNYGPTVLVQQEALK  217 (363)
T ss_dssp             EEEEEEEEECCBCCSCSCCSEEEEEEEEEEECCSSSSSSCCCEEEEECTTCCSCCTTSSTTSCBGGGTTTHHHHHHHHHH
T ss_pred             EEEEEeeccCCccccccCCcccceeEEEeeccccCccccccceeEEEeeeccccCccccccccccccccchhhHHHHhhc
Confidence            499999999888888888876666666666655443    4566666666777777778888888899999999999999


Q ss_pred             CCCCeEEEEc-CCCcEEEeCceEEEEEECC-----EEEccCCCCCCcccchHHHHHHHHHHcC-CcEEEEecCHHHHhhh
Q 028343           77 KGFTDVLFLN-AEKYIEEVSTSNIFLVKGN-----EISTPPTSGTILPGITRKSIIEITHVLG-YQVKERAIPVEELFDA  149 (210)
Q Consensus        77 ~g~deal~ld-~~g~v~E~~~sNlf~~~~~-----~l~TP~l~~~~L~GitR~~vl~~a~~~g-i~v~e~~i~~~el~~a  149 (210)
                      +|+||+|||| .+|+|+|++++|+|+++++     +++|||++.++||||||+.||++|+++| ++|+|++++++||.+|
T Consensus       218 ~G~de~l~L~~~dg~v~E~~~sNiF~v~~~kdG~~~l~tppl~~~ILpGITR~~Viela~~~g~i~V~Er~i~~~eL~~A  297 (363)
T d2a1ha1         218 RGCEQVLWLYGPDHQLTEVGTMNIFVYWTHEDGVLELVTPPLNGVILPGVVRQSLLDMAQTWGEFRVVERTITMKQLLRA  297 (363)
T ss_dssp             TTCSEEEEEETTTTEEEEETTEEEEEEEECTTSCEEEEECCCSSSSCCCHHHHHHHHHHHHHTSSEEEECCCBHHHHHHH
T ss_pred             CCceeeeecccccceEEeccceEEEEEEecCCCcEEEEeccccccccCchHHHHHHHHHHHcCCCceeecCCCHHHHHhH
Confidence            9999999996 6799999999999999766     5999999999999999999999999997 9999999999999999


Q ss_pred             ------hhhhhcccccceEEEEEEEecCeEEeec-CCcc-HHHHHHHHHHHHhHccCCCCCCCCeEeC
Q 028343          150 ------EEVFCTGTAVGVNSVNSITYQDERIEYK-RGAG-TVGQKLYEMVTGIQTGRIEDKMGWTVEL  209 (210)
Q Consensus       150 ------de~f~tns~~gi~pV~~I~~~~~~i~~~-~~~g-~~t~~L~~~~~~~~~g~~~~~~~w~~~~  209 (210)
                            ||+|+|||+.+|+||.+|+++++.+.++ +++| ++|++|+++|.+||+|+.++  +|+.+|
T Consensus       298 ~~~~~~dEvF~tgTa~~I~PV~~I~~~~~~~~i~~g~~g~~it~~L~~~l~~iq~G~~~~--~W~~~v  363 (363)
T d2a1ha1         298 LEEGRVREVFGSGTACQVCPVHRILYKDRNLHIPTMENGPELILRFQKELKEIQYGIRAH--EWMFPV  363 (363)
T ss_dssp             HHTTCEEEEEEEETTTEEEEEEEEEETTEEEECTTGGGTTHHHHHHHHHHHHHHTTSSCC--TTEEEC
T ss_pred             hhcCCccEEEEcCCCcEEEEEEEEEeCCceEEeCCCCcCHHHHHHHHHHHHHHhCCCCCC--CCeeEC
Confidence                  9999999999999999998776655443 4566 59999999999999998764  999987

>d1i2ka_ e.17.1.1 (A:) Aminodeoxychorismate lyase {Escherichia coli [TaxId: 562]}

class: Multi-domain proteins (alpha and beta)
fold: D-aminoacid aminotransferase-like PLP-dependent enzymes
superfamily: D-aminoacid aminotransferase-like PLP-dependent enzymes
family: D-aminoacid aminotransferase-like PLP-dependent enzymes
domain: Aminodeoxychorismate lyase
species: Escherichia coli [TaxId: 562]

Probab=100.00  E-value=6.3e-40  Score=274.90  Aligned_cols=184  Identities=19%  Similarity=0.200  Sum_probs=161.9

Q ss_pred             eEEEEEEecCCCcCcCCC--CCcEEEEEEEecCCCcC----CceEEEEEeeeeecCCCCCCCCccccChHHHHHHHHHHH
Q 028343            2 YIRPLLMGSGPVLGVAPA--SEYTFITYASPVGNYHK----GLLNLIVEEKFRRAIPGGTGGVKAVTNYAIIYKPIAEAK   75 (210)
Q Consensus         2 yiR~~~~g~~~~~g~~~~--~~~~~~i~~~p~~~~~~----~g~~~~~~~~~~r~~~~~l~~~K~~~~y~~~~~a~~ea~   75 (210)
                      |||++++++.+.+++.+.  ..+++++.+.+.+.++.    .|+++.++ +.++..++.++.+|+. ||+.+.+++++|+
T Consensus        78 ~iri~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~-~~~~~~~~~~~~~K~~-~~~~~~~a~~~a~  155 (269)
T d1i2ka_          78 VLKVVISRGSGGRGYSTLNSGPATRILSVTAYPAHYDRLRNEGITLALS-PVRLGRNPHLAGIKHL-NRLEQVLIRSHLE  155 (269)
T ss_dssp             EEEEEEECCSCCSTTCCTTCCCCEEEEEEECCCSHHHHHHHHCEEEEEC-SCCBCCCTTTTBCCBS-CCHHHHHHHHHHT
T ss_pred             eEEEeeecCCCccccccccccccceeEEeeccccCchhhhhcccccccc-cceecccccccccccc-ccccccccccccc
Confidence            799999988777777665  35677777777765432    78888776 5567667678899996 9999999999999


Q ss_pred             HCCCCeEEEEcCCCcEEEeCceEEEEEECCEEEccCCCCCCcccchHHHHHHHHHHcCCcEEEEecCHHHHhhhhhhhhc
Q 028343           76 AKGFTDVLFLNAEKYIEEVSTSNIFLVKGNEISTPPTSGTILPGITRKSIIEITHVLGYQVKERAIPVEELFDAEEVFCT  155 (210)
Q Consensus        76 ~~g~deal~ld~~g~v~E~~~sNlf~~~~~~l~TP~l~~~~L~GitR~~vl~~a~~~gi~v~e~~i~~~el~~ade~f~t  155 (210)
                      ++|+||+||+|++|+|+||+++|||+++||+|+||+++.++|+||||+.++++|++.|++|+|+.++++||.+|||+|+|
T Consensus       156 ~~g~dd~llld~~g~v~E~s~sNif~vk~~~~~TP~~~~~~L~GitR~~li~l~~~~g~~v~e~~i~~~dL~~adE~fl~  235 (269)
T d1i2ka_         156 QTNADEALVLDSEGWVTECCAANLFWRKGNVVYTPRLDQAGVNGIMRQFCIRLLAQSSYQLVEVQASLEESLQADEMVIC  235 (269)
T ss_dssp             TSSCSEEEEEBTTSBEEECSSSEEEEEETTEEEEECCSSSSBCCHHHHHHHHHHHHSSSEEEEECCBHHHHHTCSEEEEE
T ss_pred             cccccceeeecccchhhhccccceEEEeCCEEEEeecccccccchHHHHHHHHHHHcCCeEEEEECCHHHHHhcchheec
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ccccceEEEEEEEecCeEEeecCCccHHHHHHHHHHHH
Q 028343          156 GTAVGVNSVNSITYQDERIEYKRGAGTVGQKLYEMVTG  193 (210)
Q Consensus       156 ns~~gi~pV~~I~~~~~~i~~~~~~g~~t~~L~~~~~~  193 (210)
                      ||++||+||.+|+  ++.+    +.+++++.|..++++
T Consensus       236 ns~~gi~PV~~i~--~~~~----~~~~~~~~l~~~~~k  267 (269)
T d1i2ka_         236 NALMPVMPVCACG--DVSF----SSATLYEYLAPLCER  267 (269)
T ss_dssp             CSSSCEEEEEEET--TEEC----CCCHHHHHHHHHHHT
T ss_pred             cchhheEEEEEEC--CEEe----cCCcHHHHHHHHhhC
Confidence            9999999999994  7664    367888888777654

>d1daaa_ e.17.1.1 (A:) D-aminoacid aminotransferase {Bacillus sp., strain YM-1 [TaxId: 1409]}

class: Multi-domain proteins (alpha and beta)
fold: D-aminoacid aminotransferase-like PLP-dependent enzymes
superfamily: D-aminoacid aminotransferase-like PLP-dependent enzymes
family: D-aminoacid aminotransferase-like PLP-dependent enzymes
domain: D-aminoacid aminotransferase
species: Bacillus sp., strain YM-1 [TaxId: 1409]

Probab=100.00  E-value=6.9e-39  Score=268.97  Aligned_cols=184  Identities=21%  Similarity=0.190  Sum_probs=150.8

Q ss_pred             eEEEEEEecCCCcCcCCCC--CcEEEEEEEecCCCcC----CceEEEEEeeeeecCCCCCCCCccccChHHHHHHHHHHH
Q 028343            2 YIRPLLMGSGPVLGVAPAS--EYTFITYASPVGNYHK----GLLNLIVEEKFRRAIPGGTGGVKAVTNYAIIYKPIAEAK   75 (210)
Q Consensus         2 yiR~~~~g~~~~~g~~~~~--~~~~~i~~~p~~~~~~----~g~~~~~~~~~~r~~~~~l~~~K~~~~y~~~~~a~~ea~   75 (210)
                      |||+.++++.+..+...+.  .+.+++...+......    .+......++    .....+++|+. ||+.+++++++|.
T Consensus        86 ~ir~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~K~~-~y~~~~~a~~~a~  160 (277)
T d1daaa_          86 HIYFQVTRGTSPRAHQFPENTVKPVIIGYTKENPRPLENLEKGVKATFVED----IRWLRCDIKSL-NLLGAVLAKQEAH  160 (277)
T ss_dssp             EEEEEEECCBCSSCSSCCSSCCCCEEEEEEEECCCCHHHHHHCEEEEEEEC----CCCSCTTSCBS-CCHHHHHHHHHHH
T ss_pred             eEEeeecccCCcccccCccccccceeEEeeccccccccccccccccccccc----ccccCCccCcc-CcchhhhhhhhHh
Confidence            7899998776666665542  3334444444332221    3444333322    23346789996 9999999999999


Q ss_pred             HCCCCeEEEEcCCCcEEEeCceEEEEEECCEEEccCCCCCCcccchHHHHHHHHHHcCCcEEEEecCHHHHhhhhhhhhc
Q 028343           76 AKGFTDVLFLNAEKYIEEVSTSNIFLVKGNEISTPPTSGTILPGITRKSIIEITHVLGYQVKERAIPVEELFDAEEVFCT  155 (210)
Q Consensus        76 ~~g~deal~ld~~g~v~E~~~sNlf~~~~~~l~TP~l~~~~L~GitR~~vl~~a~~~gi~v~e~~i~~~el~~ade~f~t  155 (210)
                      ++|+|++++ |++|+|+|++++|+|+++||+++|||++.++|+||||+.|+++|++.|++|+|++++++||.+|||+|+|
T Consensus       161 ~~g~d~~l~-~~~g~v~E~~~sNvf~vk~~~~~tPp~~~giL~GitR~~v~~la~~~g~~v~e~~i~~~dL~~adEvflt  239 (277)
T d1daaa_         161 EKGCYEAIL-HRNNTVTEGSSSNVFGIKDGILYTHPANNMILKGITRDVVIACANEINMPVKEIPFTTHEALKMDELFVT  239 (277)
T ss_dssp             HTTCSEEEE-EETTEEEEETTBEEEEEETTEEEECCSSTTSCCCHHHHHHHHHHHHTTCCEECCCCBHHHHHTCSEEEEE
T ss_pred             hcCCcceee-ecCCcceecccceEEEEECCEEEecCCccccccCHhHhhhhhhhhhccccceEeeCCHHHHHhCccceec
Confidence            999999875 6689999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ccccceEEEEEEEecCeEEeecCCccHHHHHHHHHHHHh
Q 028343          156 GTAVGVNSVNSITYQDERIEYKRGAGTVGQKLYEMVTGI  194 (210)
Q Consensus       156 ns~~gi~pV~~I~~~~~~i~~~~~~g~~t~~L~~~~~~~  194 (210)
                      ||++||+||.+|+  ++.++ +|++||+|++|+++|++.
T Consensus       240 ns~~gv~PV~~id--~~~ig-~g~~g~~t~~L~~~~~~~  275 (277)
T d1daaa_         240 STTSEITPVIEID--GKLIR-DGKVGEWTRKLQKQFETK  275 (277)
T ss_dssp             ETTTEEEEEEEET--TEEST-TSSCCHHHHHHHHHHTTT
T ss_pred             cCcccEEEEEEEC--CEEcC-CCCcCHHHHHHHHHHHhh
Confidence            9999999999994  88864 677899999999999863