Citrus Sinensis ID: 028370

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210
Protein Sequence
MIESMVHEQLGPFTLQRKASRKRFFRSVIDTDDRGWTPLHIGARKGDIKLVKQLLDEGMDVNVAAWGPKSKGVTPLHLAAQGGHLEVMDVLLERGADIDARTKGACGWTPLHTAAKERKKEAVRFLIENGAFLPDDINDSRFNPPLHYCPSLEWAYEEMMRFQRESFSAGETSYSSEKLNALSRLLVHMMPLLWLDLASDAVLSVDHHYK
Secondary Structure (PSIPRED)
ccccccccccHHHHHHHHccccccccccccccccccHHHHHHHHcccHHHHHHHHHcccccccccccccccccHHHHHHHHcccHHHHHHHHHcccccccccccccccHHHHHHHHcccHHHHHHHHHcccccccccccccccccccccccccccHHHHHHHHHHccccccccccccHHHHHHHHcccHHHHHHHHcccccccccccccc
Secondary Structure Prediction (SSPRO)
ccccHHHHHHHcccHHHHHHHHHccccccccccccccHHHHHHHcccHHHHHHHHHccccccccEcccccccccHHHHHHHHccHHHHHHHHHccccccccccccccccHHHHHHHcccHHHHHHHHHccccccccccccccccHHHHHHHHccccHHHHHHHHcccccccccccHHHHHHHcccHHHHHHHHHHccccccccccccccc
Coil and Loop (DISEMBL)
MIESMvheqlgpftlqrkASRKRFFRSvidtddrgwtplhigarkGDIKLVKQLLDEgmdvnvaawgpkskgvtplhlaaqgGHLEVMDVLLERgadidartkgacgwtplhTAAKERKKEAVRFLIEngaflpddindsrfnpplhycpslEWAYEEMMRFQresfsagetsyssEKLNALSRLLVHMMPLLWLDLASDAVLSVDHHYK
Flexible Loop (DISEMBL)
miesmvheqlgpftlqrkasrkrffrsvidtddrgwtplhigarkgDIKLVKQLLDEGMDVNVAAWGPKSKGVTPLHLAAQGGHLEVMDVLLERGADIDARTKGACGWTPLHTAAKERKKEAVRFLIENGAflpddindsrfNPPLHYCPSLEWAYEEMMRFQRESFSAGETSYSSEKLNALSRLLVHMMPLLWLDLASDAVLSVDHHYK
Low Complexity Region (SEG)
MIESMVHEQLGPFTLQRKASRKRFFRSVIDTDDRGWTPLHIGARKGDIKLVKQLLDEGMDVNVAAWGPKSKGVTPLHLAAQGGHLEVMDVLLERGADIDARTKGACGWTPLHTAAKERKKEAVRFLIENGAFLPDDINDSRFNPPLHYCPSLEWAYEEMMRFQRESFSAGETSYSSEKLNALSRLLVHMMPLLWLDLASDAVLSVDHHYK
Disordered region (IsUnstruct)
*********************KRFFRSVIDTDDRGWTPLHIGARKGDIKLVKQLLDEGMDVNVAAWGPKSKGVTPLHLAAQGGHLEVMDVLLERGADIDARTKGACGWTPLHTAAKERKKEAVRFLIENGAFLPDDINDSRFNPPLHYCPSLEWAYEEMMRFQ**************KLNALSRLLVHMMPLLWLDLASDAVLSV*****
Disordered Region (DISOPRED)
MIESMVHEQLGPFTLQRKASRKRFFRSVIDTDDRGWTPLHIGARKGDIKLVKQLLDEGMDVNVAAWGPKSKGVTPLHLAAQGGHLEVMDVLLERGADIDARTKGACGWTPLHTAAKERKKEAVRFLIENGAFLPDDINDSRFNPPLHYCPSLEWAYEEMMRFQRESFSAGETSYSSEKLNALSRLLVHMMPLLWLDLASDAVL*******
Disordered Region (DISEMBL)
MIESMVHEQLGPFTLQRKASRKRFFRSVIDTDDRGWTPLHIGARKGDIKLVKQLLDEGMDVNVAAWGPKSKGVTPLHLAAQGGHLEVMDVLLERGADIDARTKGACGWTPLHTAAKERKKEAVRFLIENGAFLPDDINDSRFNPPLHYCPSLEWAYEEMMRFQR************EKLNALSRLLVHMMPLLWLDLASDAVLSVDHHYK
Disordered Region (DISPRO)
MIESMVHEQLGPFTLQRKASRKRFFRSVIDTDDRGWTPLHIGARKGDIKLVKQLLDEGMDVNVAAWGPKSKGVTPLHLAAQGGHLEVMDVLLERGADIDARTKGACGWTPLHTAAKERKKEAVRFLIENGAFLPDDINDSRFNPPLHYCPSLEWAYEEMMRFQRESFSAGETSYSSEKLNALSRLLVHMMPLLWLDLASDAVL*******
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MIESMVHEQLGPFTLQRKASRKRFFRSVIDTDDRGWTPLHIGARKGDIKLVKQLLDEGMDVNVAAWGPKSKGVTPLHLAAQGGHLEVMDVLLERGADIDARTKGACGWTPLHTAAKERKKEAVRFLIENGAFLPDDINDSRFNPPLHYCPSLEWAYEEMMRFQRESFSAGETSYSSEKLNALSRLLVHMMPLLWLDLASDAVLSVDHHYK
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	210	2.2.26 [Sep-21-2011]
Q01484	3957	Ankyrin-2 OS=Homo sapiens	yes	no	0.461	0.024	0.423	8e-15
P16157	1881	Ankyrin-1 OS=Homo sapiens	no	no	0.523	0.058	0.394	2e-14
Q8C8R3	3898	Ankyrin-2 OS=Mus musculus	yes	no	0.452	0.024	0.415	3e-14
Q02357	1862	Ankyrin-1 OS=Mus musculus	yes	no	0.528	0.059	0.381	3e-14
G5E8K5	1961	Ankyrin-3 OS=Mus musculus	no	no	0.480	0.051	0.444	1e-13
Q12955	4377	Ankyrin-3 OS=Homo sapiens	no	no	0.495	0.023	0.437	1e-13
Q8NFD2	765	Ankyrin repeat and protei	no	no	0.504	0.138	0.389	3e-12
Q59H18	835	Serine/threonine-protein	no	no	0.461	0.116	0.373	6e-12
Q6UB98	2062	Ankyrin repeat domain-con	no	no	0.557	0.056	0.357	7e-12
Q5RF15	618	Serine/threonine-protein	no	no	0.461	0.156	0.373	1e-11

>sp|Q01484|ANK2_HUMAN Ankyrin-2 OS=Homo sapiens GN=ANK2 PE=1 SV=4

 Score = 80.5 bits (197), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 44/104 (42%), Positives = 67/104 (64%), Gaps = 7/104 (6%)

Query: 35  GWTPLHIGARKGDIKLVKQLLDEGMDVNVAAWGPKSKGVTPLHLAAQGGHLEVMDVLLER 94
           G TPLH+ +++G+  +VK LLD G  ++         G+TPLH AA+ GH +V+++LLER
Sbjct: 266 GITPLHVASKRGNTNMVKLLLDRGGQIDAKTR----DGLTPLHCAARSGHDQVVELLLER 321

Query: 95  GADIDARTKGACGWTPLHTAAKERKKEAVRFLIENGAFLPDDIN 138
           GA + ARTK   G +PLH AA+    E V+ L+++ A + DD+ 
Sbjct: 322 GAPLLARTKN--GLSPLHMAAQGDHVECVKHLLQHKAPV-DDVT 362

Attaches integral membrane proteins to cytoskeletal elements. Also binds to cytoskeletal proteins. Required for coordinate assembly of Na/Ca exchanger, Na/K ATPase and InsP3 receptor at sarcoplasmic reticulum sites in cardiomyocytes. Required for the coordinated expression of the Na/K ATPase, Na/Ca exchanger and beta-2-spectrin (SPTBN1) in the inner segment of rod photoreceptors. Required for expression and targeting of SPTBN1 in neonatal cardiomyocytes and for the regulation of neonatal cardiomyocyte contraction rate.
Homo sapiens (taxid: 9606)

>sp|P16157|ANK1_HUMAN Ankyrin-1 OS=Homo sapiens GN=ANK1 PE=1 SV=3

 Score = 79.0 bits (193), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 47/119 (39%), Positives = 70/119 (58%), Gaps = 9/119 (7%)

Query: 27  SVIDTDDRGWTPLHIGARKGDIKLVKQLLDEGMDVNVAAWGPKSKG-VTPLHLAAQGGHL 85
           SV  T   G TPLHI +R+G++ +V+ LLD G  +       K+K  +TPLH AA+ GH+
Sbjct: 231 SVNFTPQNGITPLHIASRRGNVIMVRLLLDRGAQIET-----KTKDELTPLHCAARNGHV 285

Query: 86  EVMDVLLERGADIDARTKGACGWTPLHTAAKERKKEAVRFLIENGAFLPDDINDSRFNP 144
            + ++LL+ GA I A+TK   G +P+H AA+    + VR L++  A + DDI      P
Sbjct: 286 RISEILLDHGAPIQAKTKN--GLSPIHMAAQGDHLDCVRLLLQYDAEI-DDITLDHLTP 341

Isoform Mu17 together with obscurin in skeletal muscle may provide a molecular link between the sarcoplasmic reticulum and myofibrils.

Homo sapiens (taxid: 9606)

>sp|Q8C8R3|ANK2_MOUSE Ankyrin-2 OS=Mus musculus GN=Ank2 PE=1 SV=2

 Score = 78.6 bits (192), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 42/101 (41%), Positives = 61/101 (60%), Gaps = 6/101 (5%)

Query: 31  TDDRGWTPLHIGARKGDIKLVKQLLDEGMDVNVAAWGPKSKGVTPLHLAAQGGHLEVMDV 90
           T   G+TPLHI A+K  +++   LL+ G + N        +GVTPLHLA+Q GH +++ +
Sbjct: 625 TAKNGYTPLHIAAKKNQMQIASTLLNYGAETNTVT----KQGVTPLHLASQEGHTDMVTL 680

Query: 91  LLERGADIDARTKGACGWTPLHTAAKERKKEAVRFLIENGA 131
           LL++GA+I   TK   G T LH AA+E K      L ++GA
Sbjct: 681 LLDKGANIHMSTKS--GLTSLHLAAQEDKVNVADILTKHGA 719

Attaches integral membrane proteins to cytoskeletal elements. Also binds to cytoskeletal proteins. Required for coordinate assembly of Na/Ca exchanger, Na/K ATPase and InsP3 receptor at sarcoplasmic reticulum sites in cardiomyocytes (By similarity). Required for the coordinated expression of the Na/K ATPase, Na/Ca exchanger and beta-2-spectrin (SPTBN1) in the inner segment of rod photoreceptors. Required for expression and targeting of SPTBN1 in neonatal cardiomyocytes and for the regulation of neonatal cardiomyocyte contraction rate.

Mus musculus (taxid: 10090)

>sp|Q02357|ANK1_MOUSE Ankyrin-1 OS=Mus musculus GN=Ank1 PE=1 SV=2

 Score = 78.6 bits (192), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 45/118 (38%), Positives = 67/118 (56%), Gaps = 7/118 (5%)

Query: 27  SVIDTDDRGWTPLHIGARKGDIKLVKQLLDEGMDVNVAAWGPKSKGVTPLHLAAQGGHLE 86
           SV  T   G TPLHI +R+G++ +V+ LLD G  +           +TPLH AA+ GH+ 
Sbjct: 227 SVNFTPQNGITPLHIASRRGNVIMVRLLLDRGAQIETRT----KDELTPLHCAARNGHVR 282

Query: 87  VMDVLLERGADIDARTKGACGWTPLHTAAKERKKEAVRFLIENGAFLPDDINDSRFNP 144
           + ++LL+ GA I A+TK   G +P+H AA+    + VR L++  A + DDI      P
Sbjct: 283 ISEILLDHGAPIQAKTKN--GLSPIHMAAQGDHLDCVRLLLQYNAEI-DDITLDHLTP 337

Attaches integral membrane proteins to cytoskeletal elements; binds to the erythrocyte membrane protein band 4.2, to Na-K ATPase, to the lymphocyte membrane protein GP85, and to the cytoskeletal proteins fodrin, tubulin, vimentin and desmin. Erythrocyte ankyrins also link spectrin (beta chain) to the cytoplasmic domain of the erythrocytes anion exchange protein; they retain most or all of these binding functions. In skeletal muscle, isoform Mu7 together with obscurin may provide a molecular link between the sarcoplasmic reticulum and myofibrils.

Mus musculus (taxid: 10090)

>sp|G5E8K5|ANK3_MOUSE Ankyrin-3 OS=Mus musculus GN=Ank3 PE=1 SV=1

 Score = 76.6 bits (187), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 48/108 (44%), Positives = 59/108 (54%), Gaps = 7/108 (6%)

Query: 37  TPLHIGARKGDIKLVKQLLDEGMDVNVAAWGPKSKGVTPLHLAAQGGHLEVMDVLLERGA 96
           TPLHI AR G   +V+QLL +G   N A     + G TPLHLAA+ GH +V   LL+ GA
Sbjct: 484 TPLHISARLGKADIVQQLLQQGASPNAAT----TSGYTPLHLAAREGHEDVAAFLLDHGA 539

Query: 97  DIDARTKGACGWTPLHTAAKERKKEAVRFLIENGAFLPDDINDSRFNP 144
            +   TK   G+TPLH AAK  K E    L++  A  PD    S   P
Sbjct: 540 SLSITTKK--GFTPLHVAAKYGKLEVASLLLQKSAS-PDAAGKSGLTP 584

Membrane-cytoskeleton linker. May participate in the maintenance/targeting of ion channels and cell adhesion molecules at the nodes of Ranvier and axonal initial segments (By similarity). In skeletal muscle, required for costamere localization of DMD and betaDAG1.

Mus musculus (taxid: 10090)

>sp|Q12955|ANK3_HUMAN Ankyrin-3 OS=Homo sapiens GN=ANK3 PE=1 SV=3

 Score = 76.3 bits (186), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 49/112 (43%), Positives = 61/112 (54%), Gaps = 8/112 (7%)

Query: 36  WTPLHIGARKGDIKLVKQLLDEGMDVNVAAWGPKSKGVTPLHLAAQGGHLEVMDVLLERG 95
            TPLHI AR G   +V+QLL +G   N A     + G TPLHL+A+ GH +V   LL+ G
Sbjct: 500 QTPLHISARLGKADIVQQLLQQGASPNAAT----TSGYTPLHLSAREGHEDVAAFLLDHG 555

Query: 96  ADIDARTKGACGWTPLHTAAKERKKEAVRFLIENGAFLPDDINDSRFNPPLH 147
           A +   TK   G+TPLH AAK  K E    L++  A  PD    S    PLH
Sbjct: 556 ASLSITTKK--GFTPLHVAAKYGKLEVANLLLQKSAS-PDAAGKSGLT-PLH 603

Membrane-cytoskeleton linker. May participate in the maintenance/targeting of ion channels and cell adhesion molecules at the nodes of Ranvier and axonal initial segments.

Homo sapiens (taxid: 9606)

>sp|Q8NFD2|ANKK1_HUMAN Ankyrin repeat and protein kinase domain-containing protein 1 OS=Homo sapiens GN=ANKK1 PE=2 SV=1

 Score = 72.0 bits (175), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 44/113 (38%), Positives = 62/113 (54%), Gaps = 7/113 (6%)

Query: 32  DDRGWTPLHIGARKGDIKLVKQLLDEGMDVNVAAWGPKSKGVTPLHLAAQGGHLEVMDVL 91
           D  G+ PLH  A +G   + K LL  G  + +    P  +G TPLHLAA  GHLE++ +L
Sbjct: 557 DQSGYGPLHTAAARGKYLICKMLLRYGASLEL----PTHQGWTPLHLAAYKGHLEIIHLL 612

Query: 92  LERGADIDARTKGACGWTPLHTAAKERKKEAVRFLIENGAFLPDDINDSRFNP 144
            E  A++ A   GA  WTPLH AA+  ++  V  L++ GA  P+    S + P
Sbjct: 613 AESHANMGAL--GAVNWTPLHLAARHGEEAVVSALLQCGAD-PNAAEQSGWTP 662

Homo sapiens (taxid: 9606)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q59H18|TNI3K_HUMAN Serine/threonine-protein kinase TNNI3K OS=Homo sapiens GN=TNNI3K PE=1 SV=3

 Score = 70.9 bits (172), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 40/107 (37%), Positives = 60/107 (56%), Gaps = 10/107 (9%)

Query: 34  RGWTPLHIGARKGDIKLVKQLLDEGMDVNVAAWGPKSKGVTPLHLAAQGGHLEVMDVLLE 93
            G+T LH+   K + +L+  LL  G D+    +G    G+T LH+A   GHLE  DVLL+
Sbjct: 100 NGFTALHLAVYKDNAELITSLLHSGADIQQVGYG----GLTALHIATIAGHLEAADVLLQ 155

Query: 94  RGADIDARTKGACGWTPLHTAAKERKKEAVRFLIENGAFLPDDINDS 140
            GA+++   + A  +TPLH AA    ++  R L++ GA    D+N S
Sbjct: 156 HGANVN--IQDAVFFTPLHIAAYYGHEQVTRLLLKFGA----DVNVS 196

May play a role in cardiac physiology.

Homo sapiens (taxid: 9606)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q6UB98|ANR12_HUMAN Ankyrin repeat domain-containing protein 12 OS=Homo sapiens GN=ANKRD12 PE=1 SV=3

 Score = 70.5 bits (171), Expect = 7e-12,   Method: Composition-based stats.
 Identities = 44/123 (35%), Positives = 68/123 (55%), Gaps = 6/123 (4%)

Query: 9   QLGPFTLQRKASRKRFFRSVIDTDDRGWTPLHIGARKGDIKLVKQLLDEGMDVNVAAWGP 68
           Q  P   +  +S  R    V   ++RG TPLH+ A +GD+K VK+L+  G +VNV  +  
Sbjct: 159 QTTPAQKKTPSSSSRQKDKVNKRNERGETPLHMAAIRGDVKQVKELISLGANVNVKDFA- 217

Query: 69  KSKGVTPLHLAAQGGHLEVMDVLLERGADIDARTKGACGWTPLHTAAKERKKEAVRFLIE 128
              G TPLH A   G+ +V  +L+  GAD++  T+G    TPLH +A    ++ V+ L+ 
Sbjct: 218 ---GWTPLHEACNVGYYDVAKILIAAGADVN--TQGLDDDTPLHDSASSGHRDIVKLLLR 272

Query: 129 NGA 131
           +G 
Sbjct: 273 HGG 275

May recruit HDACs to the p160 coactivators/nuclear receptor complex to inhibit ligand-dependent transactivation.

Homo sapiens (taxid: 9606)

>sp|Q5RF15|TNI3K_PONAB Serine/threonine-protein kinase TNNI3K OS=Pongo abelii GN=TNNI3K PE=2 SV=3

 Score = 70.1 bits (170), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 40/107 (37%), Positives = 60/107 (56%), Gaps = 10/107 (9%)

Query: 34  RGWTPLHIGARKGDIKLVKQLLDEGMDVNVAAWGPKSKGVTPLHLAAQGGHLEVMDVLLE 93
            G+T LH+   K + +L+  LL  G D+    +G    G+T LH+A   GHLE  DVLL+
Sbjct: 100 NGFTALHLAVYKDNAELITSLLHGGADIQQVGYG----GLTALHIATIAGHLEAADVLLQ 155

Query: 94  RGADIDARTKGACGWTPLHTAAKERKKEAVRFLIENGAFLPDDINDS 140
            GA+++   + A  +TPLH AA    ++  R L++ GA    D+N S
Sbjct: 156 HGANVN--IQDAVFFTPLHIAAYYGHEQVTRLLLKFGA----DVNVS 196

May play a role in cardiac physiology.

Pongo abelii (taxid: 9601)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	210
359806825	172	uncharacterized protein LOC100818162 [Gl	0.814	0.994	0.751	5e-73
255582209	177	ankyrin repeat-containing protein, putat	0.785	0.932	0.793	1e-71
358248382	172	uncharacterized protein LOC100814428 [Gl	0.814	0.994	0.751	1e-71
224074561	174	predicted protein [Populus trichocarpa]	0.704	0.850	0.844	8e-70
225427572	174	PREDICTED: ankyrin-2 [Vitis vinifera] gi	0.790	0.954	0.761	8e-70
224138388	176	predicted protein [Populus trichocarpa]	0.709	0.846	0.838	4e-69
357484571	203	Ankyrin repeat domain-containing protein	0.714	0.738	0.8	1e-66
449462509	173	PREDICTED: ankyrin-3-like [Cucumis sativ	0.661	0.803	0.812	1e-63
242063666	165	hypothetical protein SORBIDRAFT_04g00039	0.723	0.921	0.745	1e-61
15240185	174	ankyrin repeat-containing protein [Arabi	0.747	0.902	0.698	4e-61

>gi|359806825|ref|NP_001241566.1| uncharacterized protein LOC100818162 [Glycine max] gi|255647501|gb|ACU24214.1| unknown [Glycine max]

 Score =  279 bits (714), Expect = 5e-73,   Method: Compositional matrix adjust.
 Identities = 130/173 (75%), Positives = 151/173 (87%), Gaps = 2/173 (1%)

Query: 5   MVHEQLGPFTLQRKASRKRFFRSVIDTDDRGWTPLHIGARKGDIKLVKQLLDEGMDVNVA 64
           M+ EQ  P  L RK+  +R  RS  DTDDRGWT LH+ ARKG++KLVK+L++EGMDVNV+
Sbjct: 1   MLEEQ--PVVLFRKSPSRRRLRSAFDTDDRGWTSLHVFARKGELKLVKKLINEGMDVNVS 58

Query: 65  AWGPKSKGVTPLHLAAQGGHLEVMDVLLERGADIDARTKGACGWTPLHTAAKERKKEAVR 124
           AWGPKSKGVTPLHLAA+GGH+ VMDVLLERGADIDARTKGACGWTPLH AAKER+++AV+
Sbjct: 59  AWGPKSKGVTPLHLAAEGGHIGVMDVLLERGADIDARTKGACGWTPLHIAAKERRRDAVK 118

Query: 125 FLIENGAFLPDDINDSRFNPPLHYCPSLEWAYEEMMRFQRESFSAGETSYSSE 177
           FL+ENGAF+P DI+DSRFNPPLHYCP LEWAYEEM R ++E  SAGETSYSSE
Sbjct: 119 FLLENGAFMPPDISDSRFNPPLHYCPGLEWAYEEMKRLRQEDLSAGETSYSSE 171

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255582209|ref|XP_002531897.1| ankyrin repeat-containing protein, putative [Ricinus communis] gi|223528464|gb|EEF30496.1| ankyrin repeat-containing protein, putative [Ricinus communis]

 Score =  275 bits (702), Expect = 1e-71,   Method: Compositional matrix adjust.
 Identities = 131/165 (79%), Positives = 143/165 (86%)

Query: 13  FTLQRKASRKRFFRSVIDTDDRGWTPLHIGARKGDIKLVKQLLDEGMDVNVAAWGPKSKG 72
             L R  S++  FRS +D DDRGWT LHIGARKGD+K VK+LLD GMDVNV AWGPKSKG
Sbjct: 12  LVLGRSLSKRLSFRSRVDRDDRGWTLLHIGARKGDLKEVKRLLDRGMDVNVPAWGPKSKG 71

Query: 73  VTPLHLAAQGGHLEVMDVLLERGADIDARTKGACGWTPLHTAAKERKKEAVRFLIENGAF 132
            TPLHLAA+GGHLEVMD LLERGADIDART GACGWTPLH+AAK RKK AV+FLIENGAF
Sbjct: 72  ATPLHLAAEGGHLEVMDELLERGADIDARTWGACGWTPLHSAAKGRKKAAVKFLIENGAF 131

Query: 133 LPDDINDSRFNPPLHYCPSLEWAYEEMMRFQRESFSAGETSYSSE 177
           LPDDIND RFNPPLHYCP LEWAYEEM R QRE++SAGE+SYSS+
Sbjct: 132 LPDDINDIRFNPPLHYCPGLEWAYEEMKRQQRENWSAGESSYSSD 176

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|358248382|ref|NP_001240128.1| uncharacterized protein LOC100814428 [Glycine max] gi|255644607|gb|ACU22806.1| unknown [Glycine max]

 Score =  275 bits (702), Expect = 1e-71,   Method: Compositional matrix adjust.
 Identities = 130/173 (75%), Positives = 148/173 (85%), Gaps = 2/173 (1%)

Query: 5   MVHEQLGPFTLQRKASRKRFFRSVIDTDDRGWTPLHIGARKGDIKLVKQLLDEGMDVNVA 64
           M+ EQ  P  L RK+  +R  RS   TDDRGWT LH+ ARKGD+KLVK+LL+EGMDVNV+
Sbjct: 1   MLEEQ--PVVLFRKSPSRRRLRSAFATDDRGWTSLHVFARKGDLKLVKKLLNEGMDVNVS 58

Query: 65  AWGPKSKGVTPLHLAAQGGHLEVMDVLLERGADIDARTKGACGWTPLHTAAKERKKEAVR 124
           AWGPKSKGVTPLHLAA+GGH+ VMDVLLE GADIDARTKGACGWTPLH AAKER+++AV+
Sbjct: 59  AWGPKSKGVTPLHLAAEGGHIGVMDVLLECGADIDARTKGACGWTPLHIAAKERRRDAVK 118

Query: 125 FLIENGAFLPDDINDSRFNPPLHYCPSLEWAYEEMMRFQRESFSAGETSYSSE 177
           FLIENGAF+P DI+DSRFNPPLHYCP LEWAYEEM R ++E  SAGET YSSE
Sbjct: 119 FLIENGAFMPPDISDSRFNPPLHYCPGLEWAYEEMKRLRQEDLSAGETCYSSE 171

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224074561|ref|XP_002304390.1| predicted protein [Populus trichocarpa] gi|222841822|gb|EEE79369.1| predicted protein [Populus trichocarpa]

 Score =  268 bits (686), Expect = 8e-70,   Method: Compositional matrix adjust.
 Identities = 125/148 (84%), Positives = 135/148 (91%)

Query: 29  IDTDDRGWTPLHIGARKGDIKLVKQLLDEGMDVNVAAWGPKSKGVTPLHLAAQGGHLEVM 88
           +D DDRGW  LHIGARKGD+K VK+LLDEGMDVNV AWGPKSKG+TPLHLAAQGGHLE+M
Sbjct: 27  VDRDDRGWNLLHIGARKGDLKQVKRLLDEGMDVNVPAWGPKSKGLTPLHLAAQGGHLEIM 86

Query: 89  DVLLERGADIDARTKGACGWTPLHTAAKERKKEAVRFLIENGAFLPDDINDSRFNPPLHY 148
             LLERGA+IDART GACGWTPLH+AAKERKKEAV+FLIENGAFLPDDINDSRFNPPLHY
Sbjct: 87  AELLERGANIDARTLGACGWTPLHSAAKERKKEAVKFLIENGAFLPDDINDSRFNPPLHY 146

Query: 149 CPSLEWAYEEMMRFQRESFSAGETSYSS 176
           CP LEWAYEEM R QRE+ S+GE SYSS
Sbjct: 147 CPGLEWAYEEMKRHQRENLSSGEASYSS 174

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225427572|ref|XP_002268442.1| PREDICTED: ankyrin-2 [Vitis vinifera] gi|296085508|emb|CBI29240.3| unnamed protein product [Vitis vinifera]

 Score =  268 bits (686), Expect = 8e-70,   Method: Compositional matrix adjust.
 Identities = 128/168 (76%), Positives = 143/168 (85%), Gaps = 2/168 (1%)

Query: 12  PFTLQRKASRKRFFRSVIDTDDRGWTPLHIGARKGDIKLVKQLLDEGMDVNVAAWGPKSK 71
           P + +R  S+KR FR+ +  DDRGWT LH+GARKGD+  V++LLDEGMDVNVAA GPKSK
Sbjct: 6   PDSFRRNLSKKRSFRAAVGGDDRGWTLLHVGARKGDLNEVRRLLDEGMDVNVAACGPKSK 65

Query: 72  GVTPLHLAAQGGHLEVMDVLLERGADIDARTKGACGWTPLHTAAKERKKEAVRFLIENGA 131
           GVTPLHLAAQGGHL VMD LLERGA+IDARTKGACGWTPLH AAKER K+A++FLIENGA
Sbjct: 66  GVTPLHLAAQGGHLRVMDELLERGANIDARTKGACGWTPLHNAAKERNKDAIKFLIENGA 125

Query: 132 FLPDDINDSRFNPPLHYCPSLEWAYEEMMRFQRE--SFSAGETSYSSE 177
           FL  DIND+RFNPPLHYC  LEWAYEEM R Q+E  S SAGETSYSSE
Sbjct: 126 FLAADINDNRFNPPLHYCTGLEWAYEEMKRIQQENWSSSAGETSYSSE 173

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224138388|ref|XP_002326590.1| predicted protein [Populus trichocarpa] gi|222833912|gb|EEE72389.1| predicted protein [Populus trichocarpa]

 Score =  266 bits (680), Expect = 4e-69,   Method: Compositional matrix adjust.
 Identities = 125/149 (83%), Positives = 133/149 (89%)

Query: 29  IDTDDRGWTPLHIGARKGDIKLVKQLLDEGMDVNVAAWGPKSKGVTPLHLAAQGGHLEVM 88
           +D DDRGWT LHIGARKGD+K VK LLDEGMDVNV AWGPKSKG+T LHLAAQGGHLE+M
Sbjct: 27  VDRDDRGWTSLHIGARKGDLKQVKHLLDEGMDVNVPAWGPKSKGLTALHLAAQGGHLEIM 86

Query: 89  DVLLERGADIDARTKGACGWTPLHTAAKERKKEAVRFLIENGAFLPDDINDSRFNPPLHY 148
           D LL RGA+IDART GACGWTPLH AAKERKKEAV+FLIENGAFLPDD+NDSRFNPPLHY
Sbjct: 87  DELLARGANIDARTLGACGWTPLHRAAKERKKEAVKFLIENGAFLPDDMNDSRFNPPLHY 146

Query: 149 CPSLEWAYEEMMRFQRESFSAGETSYSSE 177
           C  LEWAYEEM R QRE+ SAGE SYSSE
Sbjct: 147 CTGLEWAYEEMKRHQRENLSAGEASYSSE 175

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357484571|ref|XP_003612573.1| Ankyrin repeat domain-containing protein [Medicago truncatula] gi|355513908|gb|AES95531.1| Ankyrin repeat domain-containing protein [Medicago truncatula]

 Score =  258 bits (659), Expect = 1e-66,   Method: Compositional matrix adjust.
 Identities = 120/150 (80%), Positives = 133/150 (88%)

Query: 29  IDTDDRGWTPLHIGARKGDIKLVKQLLDEGMDVNVAAWGPKSKGVTPLHLAAQGGHLEVM 88
           +DTDDRGWT LH+ ARKGDIKLVK+LL+EGMDVNV AWGPKSKGVTPLHLAA+GGHL VM
Sbjct: 54  VDTDDRGWTSLHVYARKGDIKLVKRLLNEGMDVNVTAWGPKSKGVTPLHLAAEGGHLGVM 113

Query: 89  DVLLERGADIDARTKGACGWTPLHTAAKERKKEAVRFLIENGAFLPDDINDSRFNPPLHY 148
           D LLERGA+IDARTKGACGWTPLH AAKER ++AV+FL+ENGAFLP DINDSRFNPPLHY
Sbjct: 114 DELLERGANIDARTKGACGWTPLHIAAKERNRDAVKFLVENGAFLPPDINDSRFNPPLHY 173

Query: 149 CPSLEWAYEEMMRFQRESFSAGETSYSSEK 178
           CP LEWAYEEM R ++E  S  +TS SSE 
Sbjct: 174 CPGLEWAYEEMKRLRQEELSPEDTSCSSEN 203

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449462509|ref|XP_004148983.1| PREDICTED: ankyrin-3-like [Cucumis sativus] gi|449532583|ref|XP_004173260.1| PREDICTED: ankyrin-3-like [Cucumis sativus]

 Score =  248 bits (633), Expect = 1e-63,   Method: Compositional matrix adjust.
 Identities = 113/139 (81%), Positives = 127/139 (91%)

Query: 28  VIDTDDRGWTPLHIGARKGDIKLVKQLLDEGMDVNVAAWGPKSKGVTPLHLAAQGGHLEV 87
           V +TDDRGWT LHIGARKGD+K VK+LL++GMDVN  AWGPKSKG+TPLHLAA+GGHLEV
Sbjct: 23  VFNTDDRGWTSLHIGARKGDLKEVKRLLNDGMDVNSIAWGPKSKGLTPLHLAAEGGHLEV 82

Query: 88  MDVLLERGADIDARTKGACGWTPLHTAAKERKKEAVRFLIENGAFLPDDINDSRFNPPLH 147
           MD LLERGA+IDARTKGACGWTPLH+AAKER+KEAV+FL+ENGAFLPDDIND RFNPPLH
Sbjct: 83  MDELLERGANIDARTKGACGWTPLHSAAKERRKEAVKFLVENGAFLPDDINDCRFNPPLH 142

Query: 148 YCPSLEWAYEEMMRFQRES 166
           YCP LEWAYEEM R   ++
Sbjct: 143 YCPGLEWAYEEMKRLHHDN 161

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|242063666|ref|XP_002453122.1| hypothetical protein SORBIDRAFT_04g000390 [Sorghum bicolor] gi|241932953|gb|EES06098.1| hypothetical protein SORBIDRAFT_04g000390 [Sorghum bicolor]

 Score =  241 bits (615), Expect = 1e-61,   Method: Compositional matrix adjust.
 Identities = 114/153 (74%), Positives = 127/153 (83%), Gaps = 1/153 (0%)

Query: 26  RSVIDTDDRGWTPLHIGARKGDIKLVKQLLDEGMDVNVAAWGPKSKGVTPLHLAAQGGHL 85
           RS  D DDRGW PLH+ ARKGD+K V++LLD+GMDVN  AWGPK  G TPLHLAAQGGH+
Sbjct: 14  RSCHDADDRGWNPLHVAARKGDLKEVRRLLDDGMDVNAPAWGPKCPGATPLHLAAQGGHV 73

Query: 86  EVMDVLLERGADIDARTKGACGWTPLHTAAKERKKEAVRFLIENGAFLPDDINDSRFNPP 145
           ++MD LLERGA+IDARTKGACGWTPLH AAKER K+AVRFLIENGAFLP ++ND RFNPP
Sbjct: 74  KIMDELLERGANIDARTKGACGWTPLHIAAKERNKKAVRFLIENGAFLPPEMNDHRFNPP 133

Query: 146 LHYCPSLEWAYEEMMRFQRESFSAGETSYSSEK 178
           LHYC  LEWAY EM R Q ES S GETS SS+ 
Sbjct: 134 LHYCSGLEWAY-EMKRVQDESDSPGETSLSSDN 165

Source: Sorghum bicolor

Species: Sorghum bicolor

Genus: Sorghum

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|15240185|ref|NP_200931.1| ankyrin repeat-containing protein [Arabidopsis thaliana] gi|9759468|dbj|BAB10384.1| unnamed protein product [Arabidopsis thaliana] gi|14517560|gb|AAK62670.1| AT5g61230/maf19_230 [Arabidopsis thaliana] gi|18700228|gb|AAL77724.1| AT5g61230/maf19_230 [Arabidopsis thaliana] gi|332010056|gb|AED97439.1| ankyrin repeat-containing protein [Arabidopsis thaliana]

 Score =  239 bits (611), Expect = 4e-61,   Method: Compositional matrix adjust.
 Identities = 111/159 (69%), Positives = 132/159 (83%), Gaps = 2/159 (1%)

Query: 5   MVHEQLGPFTLQRKASRKRFFRSVIDTDDRGWTPLHIGARKGDIKLVKQLLDEGMDVNVA 64
           M+ E    F+L+R + R+R  RS  + DDRGW PLHI ARKGD+K VKQLLD+GMDVN  
Sbjct: 1   MLQEPSAAFSLRRNSFRRRSPRS--NVDDRGWNPLHIKARKGDLKSVKQLLDQGMDVNAL 58

Query: 65  AWGPKSKGVTPLHLAAQGGHLEVMDVLLERGADIDARTKGACGWTPLHTAAKERKKEAVR 124
           AWGPKSKGV+ LHLAA+GGH+EVMD+LLERGA+IDA+T G+CGWTPLH AAKERK+EAV+
Sbjct: 59  AWGPKSKGVSALHLAAEGGHIEVMDLLLERGANIDAKTWGSCGWTPLHAAAKERKREAVK 118

Query: 125 FLIENGAFLPDDINDSRFNPPLHYCPSLEWAYEEMMRFQ 163
           FL+ENGAFL DDI D+RFNPP+HYC  LEWAYEEM +  
Sbjct: 119 FLVENGAFLADDITDTRFNPPVHYCHGLEWAYEEMKKLN 157

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	210
TAIR|locus:2159456	174	ANK6 "ankyrin repeat protein 6	0.814	0.982	0.68	7.9e-62
TAIR|locus:2142783	175	PIA1 "AT5G07840" [Arabidopsis	0.819	0.982	0.641	2.5e-58
UNIPROTKB|F1P1R3	189	PSMD10 "Uncharacterized protei	0.523	0.582	0.415	1.4e-16
UNIPROTKB|F1NA51	2890	ANK3 "Uncharacterized protein"	0.504	0.036	0.456	1.3e-15
UNIPROTKB|F1NJ80	1699	ANK3 "Uncharacterized protein"	0.504	0.062	0.456	2.6e-15
ZFIN|ZDB-GENE-091113-6	1923	si:ch211-263m18.3 "si:ch211-26	0.514	0.056	0.398	2.8e-15
UNIPROTKB|F1NNX8	1737	ANK3 "Uncharacterized protein"	0.504	0.061	0.456	2.8e-15
ZFIN|ZDB-GENE-081104-19	1929	si:ch211-173b16.3 "si:ch211-17	0.514	0.055	0.389	2.8e-15
UNIPROTKB|F1NNX6	1824	ANK3 "Uncharacterized protein"	0.504	0.058	0.456	3.1e-15
UNIPROTKB|F1NNX7	1915	ANK3 "Uncharacterized protein"	0.504	0.055	0.456	3.5e-15

TAIR|locus:2159456 ANK6 "ankyrin repeat protein 6" [Arabidopsis thaliana (taxid:3702)]

 Score = 632 (227.5 bits), Expect = 7.9e-62, P = 7.9e-62
 Identities = 119/175 (68%), Positives = 143/175 (81%)

Query:     5 MVHEQLGPFTLQRKASRKRFFRSVIDTDDRGWTPLHIGARKGDIKLVKQLLDEGMDVNVA 64
             M+ E    F+L+R + R+R  RS  + DDRGW PLHI ARKGD+K VKQLLD+GMDVN  
Sbjct:     1 MLQEPSAAFSLRRNSFRRRSPRS--NVDDRGWNPLHIKARKGDLKSVKQLLDQGMDVNAL 58

Query:    65 AWGPKSKGVTPLHLAAQGGHLEVMDVLLERGADIDARTKGACGWTPLHTAAKERKKEAVR 124
             AWGPKSKGV+ LHLAA+GGH+EVMD+LLERGA+IDA+T G+CGWTPLH AAKERK+EAV+
Sbjct:    59 AWGPKSKGVSALHLAAEGGHIEVMDLLLERGANIDAKTWGSCGWTPLHAAAKERKREAVK 118

Query:   125 FLIENGAFLPDDINDSRFNPPLHYCPSLEWAYEEMMRFQRESFSA--GETSYSSE 177
             FL+ENGAFL DDI D+RFNPP+HYC  LEWAYEEM +   ES S+  G+TS SS+
Sbjct:   119 FLVENGAFLADDITDTRFNPPVHYCHGLEWAYEEMKKLNSESSSSSGGDTSSSSD 173

GO:0005634 "nucleus" evidence=ISM;IDA

GO:0005739 "mitochondrion" evidence=IDA

GO:0009553 "embryo sac development" evidence=IMP

GO:0009567 "double fertilization forming a zygote and endosperm" evidence=IMP

GO:0080173 "male-female gamete recognition during double fertilization" evidence=IMP

TAIR|locus:2142783 PIA1 "AT5G07840" [Arabidopsis thaliana (taxid:3702)]

 Score = 599 (215.9 bits), Expect = 2.5e-58, P = 2.5e-58
 Identities = 111/173 (64%), Positives = 136/173 (78%)

Query:     5 MVHEQLGPFTLQRKASRKRFFRSVIDTDDRGWTPLHIGARKGDIKLVKQLLDEGMDVNVA 64
             M+ EQ    + +  + R+R   + +D DDRGWT LHI AR+GD+K VK+LLD+G DVN  
Sbjct:     1 MLQEQPVALSFRPNSFRRRSMETGVDRDDRGWTQLHIKAREGDLKAVKELLDQGADVNAL 60

Query:    65 AWGPKSKGVTPLHLAAQGGHLEVMDVLLERGADIDARTKGACGWTPLHTAAKERKKEAVR 124
             A GPKSKG+TPLHLAA+GGH+EVMD+LLERGA+++ART GACGWTPLH AAKERK+EAV+
Sbjct:    61 ACGPKSKGMTPLHLAAKGGHIEVMDLLLERGANMEARTSGACGWTPLHAAAKERKREAVK 120

Query:   125 FLIENGAFLPDDINDSRFNPPLHYCPSLEWAYEEMMRFQRE-SFSAGETSYSS 176
             FL+ NGAFLPDDI DSRFNPP+ YC  LEWAYEE  +   + S S G+TS SS
Sbjct:   121 FLVGNGAFLPDDITDSRFNPPVQYCHGLEWAYEERKKLSEDTSLSCGDTSCSS 173

GO:0008150 "biological_process" evidence=ND

UNIPROTKB|F1P1R3 PSMD10 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 205 (77.2 bits), Expect = 1.4e-16, P = 1.4e-16
 Identities = 49/118 (41%), Positives = 64/118 (54%)

Query:    30 DTDDRGWTPLHIGARKGDIKLVKQLLDEGMDVNVAAWGPKSKGVTPLHLAAQGGHLEVMD 89
             D DD GWTPLHI A  G  ++VK L+D+G  +N         G TPLH AA     E+  
Sbjct:    31 DKDDAGWTPLHIAASAGRDEIVKALIDKGAPINAV----NQNGCTPLHYAASKNKQEIAI 86

Query:    90 VLLERGADIDARTKGACGWTPLHTAAKERKKEAVRFLIENGAFLPDDINDSRFNPPLH 147
             +LLE GAD DA        TPLH AA +   + ++ L+ + A +  +I DS  N PLH
Sbjct:    87 MLLENGADPDATDHFES--TPLHRAAAKGNLKMIQILLRHNASV--NIQDSEGNTPLH 140

GO:0000122 "negative regulation of transcription from RNA polymerase II promoter" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0007253 "cytoplasmic sequestering of NF-kappaB" evidence=IEA

GO:0008134 "transcription factor binding" evidence=IEA

GO:0008540 "proteasome regulatory particle, base subcomplex" evidence=IEA

GO:0015629 "actin cytoskeleton" evidence=IEA

GO:0030307 "positive regulation of cell growth" evidence=IEA

GO:0031398 "positive regulation of protein ubiquitination" evidence=IEA

GO:0032088 "negative regulation of NF-kappaB transcription factor activity" evidence=IEA

GO:0043066 "negative regulation of apoptotic process" evidence=IEA

GO:0043409 "negative regulation of MAPK cascade" evidence=IEA

GO:0043518 "negative regulation of DNA damage response, signal transduction by p53 class mediator" evidence=IEA

GO:0045111 "intermediate filament cytoskeleton" evidence=IEA

GO:0045737 "positive regulation of cyclin-dependent protein kinase activity" evidence=IEA

GO:0070682 "proteasome regulatory particle assembly" evidence=IEA

GO:0090201 "negative regulation of release of cytochrome c from mitochondria" evidence=IEA

UNIPROTKB|F1NA51 ANK3 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 202 (76.2 bits), Expect = 1.3e-15, Sum P(2) = 1.3e-15
 Identities = 53/116 (45%), Positives = 65/116 (56%)

Query:    32 DDRGWTPLHIGARKGDIKLVKQLLDEGMDVNVAAWGPKSKGVTPLHLAAQGGHLEVMDVL 91
             DD+  TPLHI AR G   +V+QLL +G   N A     + G TPLHL+A+ GH +V  VL
Sbjct:   498 DDQ--TPLHISARLGKADIVQQLLQQGASPNAAT----TSGYTPLHLSAREGHEDVASVL 551

Query:    92 LERGADIDARTKGACGWTPLHTAAKERKKEAVRFLIENGAFLPDDINDSRFNPPLH 147
             LE GA +   TK   G+TPLH AAK  K E    L++  A  PD    S   P LH
Sbjct:   552 LEHGASLAIITKK--GFTPLHVAAKYGKIEVANLLLQKNAS-PDASGKSGLTP-LH 603

GO:0000281 "cytokinesis after mitosis" evidence=IEA

GO:0005200 "structural constituent of cytoskeleton" evidence=IEA

GO:0005923 "tight junction" evidence=IEA

GO:0007411 "axon guidance" evidence=IEA

GO:0009925 "basal plasma membrane" evidence=IEA

GO:0014704 "intercalated disc" evidence=IEA

GO:0016328 "lateral plasma membrane" evidence=IEA

GO:0019228 "regulation of action potential in neuron" evidence=IEA

GO:0033268 "node of Ranvier" evidence=IEA

GO:0042383 "sarcolemma" evidence=IEA

GO:0043001 "Golgi to plasma membrane protein transport" evidence=IEA

GO:0043194 "axon initial segment" evidence=IEA

GO:0045202 "synapse" evidence=IEA

GO:0050808 "synapse organization" evidence=IEA

GO:0071709 "membrane assembly" evidence=IEA

GO:0072660 "maintenance of protein location in plasma membrane" evidence=IEA

GO:0072661 "protein targeting to plasma membrane" evidence=IEA

UNIPROTKB|F1NJ80 ANK3 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 202 (76.2 bits), Expect = 2.6e-15, Sum P(2) = 2.6e-15
 Identities = 53/116 (45%), Positives = 65/116 (56%)

Query:    32 DDRGWTPLHIGARKGDIKLVKQLLDEGMDVNVAAWGPKSKGVTPLHLAAQGGHLEVMDVL 91
             DD+  TPLHI AR G   +V+QLL +G   N A     + G TPLHL+A+ GH +V  VL
Sbjct:   456 DDQ--TPLHISARLGKADIVQQLLQQGASPNAAT----TSGYTPLHLSAREGHEDVASVL 509

Query:    92 LERGADIDARTKGACGWTPLHTAAKERKKEAVRFLIENGAFLPDDINDSRFNPPLH 147
             LE GA +   TK   G+TPLH AAK  K E    L++  A  PD    S   P LH
Sbjct:   510 LEHGASLAIITKK--GFTPLHVAAKYGKIEVANLLLQKNAS-PDASGKSGLTP-LH 561

GO:0007165 "signal transduction" evidence=IEA

ZFIN|ZDB-GENE-091113-6 si:ch211-263m18.3 "si:ch211-263m18.3" [Danio rerio (taxid:7955)]

 Score = 201 (75.8 bits), Expect = 2.8e-15, Sum P(2) = 2.8e-15
 Identities = 47/118 (39%), Positives = 73/118 (61%)

Query:    31 TDDRGWTPLHIGARKGDIKLVKQLLDEGMDVNVAAWGPKSKG-VTPLHLAAQGGHLEVMD 89
             T   G TPLHI +R+G++ +V+ LLD G  ++      K+K  +TPLH AA+ GH+ V++
Sbjct:   268 TPKNGITPLHIASRRGNVIMVRLLLDRGAQIDA-----KTKDELTPLHCAARNGHVRVVE 322

Query:    90 VLLERGADIDARTKGACGWTPLHTAAKERKKEAVRFLIENGAFLPDDINDSRFNPPLH 147
             +LL++GA + A+TK   G +P+H AA+    + VR L++  A + DDI      P LH
Sbjct:   323 ILLDQGAPLQAKTKN--GLSPIHMAAQGDHMDCVRQLLQYNAEI-DDITLDHLTP-LH 376

GO:0007165 "signal transduction" evidence=IEA

UNIPROTKB|F1NNX8 ANK3 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 202 (76.2 bits), Expect = 2.8e-15, Sum P(2) = 2.8e-15
 Identities = 53/116 (45%), Positives = 65/116 (56%)

Query:    32 DDRGWTPLHIGARKGDIKLVKQLLDEGMDVNVAAWGPKSKGVTPLHLAAQGGHLEVMDVL 91
             DD+  TPLHI AR G   +V+QLL +G   N A     + G TPLHL+A+ GH +V  VL
Sbjct:   456 DDQ--TPLHISARLGKADIVQQLLQQGASPNAAT----TSGYTPLHLSAREGHEDVASVL 509

Query:    92 LERGADIDARTKGACGWTPLHTAAKERKKEAVRFLIENGAFLPDDINDSRFNPPLH 147
             LE GA +   TK   G+TPLH AAK  K E    L++  A  PD    S   P LH
Sbjct:   510 LEHGASLAIITKK--GFTPLHVAAKYGKIEVANLLLQKNAS-PDASGKSGLTP-LH 561

GO:0007165 "signal transduction" evidence=IEA

ZFIN|ZDB-GENE-081104-19 si:ch211-173b16.3 "si:ch211-173b16.3" [Danio rerio (taxid:7955)]

 Score = 199 (75.1 bits), Expect = 2.8e-15, Sum P(2) = 2.8e-15
 Identities = 46/118 (38%), Positives = 73/118 (61%)

Query:    31 TDDRGWTPLHIGARKGDIKLVKQLLDEGMDVNVAAWGPKSKG-VTPLHLAAQGGHLEVMD 89
             T   G TPLHI +R+G++ +V+ LLD G  ++      K+K  +TPLH AA+ GH+ +++
Sbjct:   229 TPKNGITPLHIASRRGNVIMVRLLLDRGAKIDA-----KTKDELTPLHCAARNGHVRIIE 283

Query:    90 VLLERGADIDARTKGACGWTPLHTAAKERKKEAVRFLIENGAFLPDDINDSRFNPPLH 147
             +LL++GA I A+TK   G +P+H AA+    + +R L++  A + DDI      P LH
Sbjct:   284 ILLDQGAPIQAKTKN--GLSPIHMAAQGDHLDCIRQLLQYNAEI-DDITLDHLTP-LH 337

GO:0007165 "signal transduction" evidence=IEA

UNIPROTKB|F1NNX6 ANK3 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 202 (76.2 bits), Expect = 3.1e-15, Sum P(2) = 3.1e-15
 Identities = 53/116 (45%), Positives = 65/116 (56%)

Query:    32 DDRGWTPLHIGARKGDIKLVKQLLDEGMDVNVAAWGPKSKGVTPLHLAAQGGHLEVMDVL 91
             DD+  TPLHI AR G   +V+QLL +G   N A     + G TPLHL+A+ GH +V  VL
Sbjct:   456 DDQ--TPLHISARLGKADIVQQLLQQGASPNAAT----TSGYTPLHLSAREGHEDVASVL 509

Query:    92 LERGADIDARTKGACGWTPLHTAAKERKKEAVRFLIENGAFLPDDINDSRFNPPLH 147
             LE GA +   TK   G+TPLH AAK  K E    L++  A  PD    S   P LH
Sbjct:   510 LEHGASLAIITKK--GFTPLHVAAKYGKIEVANLLLQKNAS-PDASGKSGLTP-LH 561

GO:0007165 "signal transduction" evidence=IEA

UNIPROTKB|F1NNX7 ANK3 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 202 (76.2 bits), Expect = 3.5e-15, Sum P(2) = 3.5e-15
 Identities = 53/116 (45%), Positives = 65/116 (56%)

Query:    32 DDRGWTPLHIGARKGDIKLVKQLLDEGMDVNVAAWGPKSKGVTPLHLAAQGGHLEVMDVL 91
             DD+  TPLHI AR G   +V+QLL +G   N A     + G TPLHL+A+ GH +V  VL
Sbjct:   456 DDQ--TPLHISARLGKADIVQQLLQQGASPNAAT----TSGYTPLHLSAREGHEDVASVL 509

Query:    92 LERGADIDARTKGACGWTPLHTAAKERKKEAVRFLIENGAFLPDDINDSRFNPPLH 147
             LE GA +   TK   G+TPLH AAK  K E    L++  A  PD    S   P LH
Sbjct:   510 LEHGASLAIITKK--GFTPLHVAAKYGKIEVANLLLQKNAS-PDASGKSGLTP-LH 561

GO:0007165 "signal transduction" evidence=IEA

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Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

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Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	GSVIVG00007629001	SubName- Full=Chromosome chr2 scaffold_196, whole genome shotgun sequence; (174 aa)
		(Vitis vinifera)
Predicted Functional Partners:
	GSVIVG00018032001	SubName- Full=Chromosome chr17 scaffold_16, whole genome shotgun sequence; (222 aa)			•						0.462
	GSVIVG00000603001	SubName- Full=Chromosome chr8 scaffold_106, whole genome shotgun sequence; (201 aa)			•						0.451

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Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	210
cd00204	126	cd00204, ANK, ankyrin repeats; ankyrin repeats med	1e-32
cd00204	126	cd00204, ANK, ankyrin repeats; ankyrin repeats med	7e-27
pfam12796	91	pfam12796, Ank_2, Ankyrin repeats (3 copies)	3e-26
cd00204	126	cd00204, ANK, ankyrin repeats; ankyrin repeats med	5e-22
PHA03100	422	PHA03100, PHA03100, ankyrin repeat protein; Provis	4e-18
COG0666	235	COG0666, Arp, FOG: Ankyrin repeat [General functio	1e-16
pfam12796	91	pfam12796, Ank_2, Ankyrin repeats (3 copies)	6e-16
COG0666	235	COG0666, Arp, FOG: Ankyrin repeat [General functio	9e-15
PHA02874	434	PHA02874, PHA02874, ankyrin repeat protein; Provis	5e-14
PHA02878	477	PHA02878, PHA02878, ankyrin repeat protein; Provis	6e-13
PHA03095	471	PHA03095, PHA03095, ankyrin-like protein; Provisio	5e-12
PHA02874	434	PHA02874, PHA02874, ankyrin repeat protein; Provis	8e-12
pfam13637	54	pfam13637, Ank_4, Ankyrin repeats (many copies)	1e-11
PHA02874	434	PHA02874, PHA02874, ankyrin repeat protein; Provis	4e-11
PHA03100	422	PHA03100, PHA03100, ankyrin repeat protein; Provis	5e-11
PHA02878	477	PHA02878, PHA02878, ankyrin repeat protein; Provis	7e-11
PHA03095	471	PHA03095, PHA03095, ankyrin-like protein; Provisio	7e-11
PHA02875	413	PHA02875, PHA02875, ankyrin repeat protein; Provis	9e-11
pfam00023	33	pfam00023, Ank, Ankyrin repeat	3e-10
PHA03100	422	PHA03100, PHA03100, ankyrin repeat protein; Provis	9e-10
PHA03095	471	PHA03095, PHA03095, ankyrin-like protein; Provisio	2e-09
PHA03100	422	PHA03100, PHA03100, ankyrin repeat protein; Provis	5e-09
pfam13857	56	pfam13857, Ank_5, Ankyrin repeats (many copies)	8e-09
pfam13637	54	pfam13637, Ank_4, Ankyrin repeats (many copies)	9e-09
PHA02875	413	PHA02875, PHA02875, ankyrin repeat protein; Provis	2e-08
PHA02875	413	PHA02875, PHA02875, ankyrin repeat protein; Provis	3e-08
PHA02878	477	PHA02878, PHA02878, ankyrin repeat protein; Provis	7e-08
PLN03192	823	PLN03192, PLN03192, Voltage-dependent potassium ch	7e-08
PHA02876	682	PHA02876, PHA02876, ankyrin repeat protein; Provis	8e-08
PHA03095	471	PHA03095, PHA03095, ankyrin-like protein; Provisio	1e-07
TIGR00870	743	TIGR00870, trp, transient-receptor-potential calci	9e-07
PTZ00322	664	PTZ00322, PTZ00322, 6-phosphofructo-2-kinase/fruct	9e-07
pfam13606	30	pfam13606, Ank_3, Ankyrin repeat	1e-06
PHA02878	477	PHA02878, PHA02878, ankyrin repeat protein; Provis	2e-06
smart00248	30	smart00248, ANK, ankyrin repeats	2e-06
PHA03100	422	PHA03100, PHA03100, ankyrin repeat protein; Provis	4e-06
pfam12796	91	pfam12796, Ank_2, Ankyrin repeats (3 copies)	1e-05
pfam00023	33	pfam00023, Ank, Ankyrin repeat	1e-05
TIGR00870	743	TIGR00870, trp, transient-receptor-potential calci	1e-05
smart00248	30	smart00248, ANK, ankyrin repeats	2e-05
PHA02874	434	PHA02874, PHA02874, ankyrin repeat protein; Provis	3e-05
PHA02875	413	PHA02875, PHA02875, ankyrin repeat protein; Provis	3e-05
pfam00023	33	pfam00023, Ank, Ankyrin repeat	3e-05
pfam13606	30	pfam13606, Ank_3, Ankyrin repeat	3e-05
pfam13606	30	pfam13606, Ank_3, Ankyrin repeat	6e-05
PHA02874	434	PHA02874, PHA02874, ankyrin repeat protein; Provis	7e-05
pfam13637	54	pfam13637, Ank_4, Ankyrin repeats (many copies)	1e-04
PHA02876	682	PHA02876, PHA02876, ankyrin repeat protein; Provis	1e-04
PHA02876	682	PHA02876, PHA02876, ankyrin repeat protein; Provis	1e-04
PLN03192	823	PLN03192, PLN03192, Voltage-dependent potassium ch	2e-04
PHA02798	489	PHA02798, PHA02798, ankyrin-like protein; Provisio	3e-04
PHA02874	434	PHA02874, PHA02874, ankyrin repeat protein; Provis	7e-04
pfam13857	56	pfam13857, Ank_5, Ankyrin repeats (many copies)	7e-04
pfam13857	56	pfam13857, Ank_5, Ankyrin repeats (many copies)	7e-04
PLN03192	823	PLN03192, PLN03192, Voltage-dependent potassium ch	7e-04
PHA02876	682	PHA02876, PHA02876, ankyrin repeat protein; Provis	0.001
smart00248	30	smart00248, ANK, ankyrin repeats	0.001
PHA02859	209	PHA02859, PHA02859, ankyrin repeat protein; Provis	0.001
PHA02878	477	PHA02878, PHA02878, ankyrin repeat protein; Provis	0.004

>gnl|CDD|238125 cd00204, ANK, ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins

 Score =  113 bits (285), Expect = 1e-32
 Identities = 52/119 (43%), Positives = 74/119 (62%), Gaps = 8/119 (6%)

Query: 31  TDDRGWTPLHIGARKGDIKLVKQLLDEGMDVNVAAWGPKSKGVTPLHLAAQGGHLEVMDV 90
            D+ G TPLH+ A  G +++VK LL+ G DVN       + G TPLHLAA+ GHLE++ +
Sbjct: 3   RDEDGRTPLHLAASNGHLEVVKLLLENGADVNA----KDNDGRTPLHLAAKNGHLEIVKL 58

Query: 91  LLERGADIDARTKGACGWTPLHTAAKERKKEAVRFLIENGAFLPDDINDSRFNPPLHYC 149
           LLE+GAD++AR K   G TPLH AA+    + V+ L+++GA +  +  D     PLH  
Sbjct: 59  LLEKGADVNARDK--DGNTPLHLAARNGNLDVVKLLLKHGADV--NARDKDGRTPLHLA 113

The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other types of domains. The structural repeat unit contains two antiparallel helices and a beta-hairpin, repeats are stacked in a superhelical arrangement; this alignment contains 4 consecutive repeats. Length = 126

>gnl|CDD|238125 cd00204, ANK, ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins

 Score = 99.0 bits (247), Expect = 7e-27
 Identities = 47/101 (46%), Positives = 65/101 (64%), Gaps = 6/101 (5%)

Query: 27  SVIDTDDRGWTPLHIGARKGDIKLVKQLLDEGMDVNVAAWGPKSKGVTPLHLAAQGGHLE 86
            V   D+ G TPLH+ A+ G +++VK LL++G DVN         G TPLHLAA+ G+L+
Sbjct: 32  DVNAKDNDGRTPLHLAAKNGHLEIVKLLLEKGADVNA----RDKDGNTPLHLAARNGNLD 87

Query: 87  VMDVLLERGADIDARTKGACGWTPLHTAAKERKKEAVRFLI 127
           V+ +LL+ GAD++AR K   G TPLH AAK    E V+ L+
Sbjct: 88  VVKLLLKHGADVNARDK--DGRTPLHLAAKNGHLEVVKLLL 126

The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other types of domains. The structural repeat unit contains two antiparallel helices and a beta-hairpin, repeats are stacked in a superhelical arrangement; this alignment contains 4 consecutive repeats. Length = 126

>gnl|CDD|205076 pfam12796, Ank_2, Ankyrin repeats (3 copies)

 Score = 96.6 bits (241), Expect = 3e-26
 Identities = 45/100 (45%), Positives = 65/100 (65%), Gaps = 12/100 (12%)

Query: 39  LHIGARKGDIKLVKQLLDEGMDVNVAAWGPKSKGVTPLHLAAQGGHLEVMDVLLERGADI 98
           LH+ A+ G+++LVK LL++G DVN+          T LHLAA+ G+LE++ +LLE GAD+
Sbjct: 1   LHLAAKNGNLELVKLLLEKGADVNL------GDTDTALHLAARNGNLEIVKLLLEHGADV 54

Query: 99  DARTKGACGWTPLHTAAKERKKEAVRFLIENGAFLPDDIN 138
           +A+ K   G T LH AA+    E V+ L+E+GA    DIN
Sbjct: 55  NAKDK--DGNTALHLAARNGNLEIVKLLLEHGA----DIN 88

Length = 91

>gnl|CDD|238125 cd00204, ANK, ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins

 Score = 86.7 bits (215), Expect = 5e-22
 Identities = 39/93 (41%), Positives = 52/93 (55%), Gaps = 6/93 (6%)

Query: 70  SKGVTPLHLAAQGGHLEVMDVLLERGADIDARTKGACGWTPLHTAAKERKKEAVRFLIEN 129
             G TPLHLAA  GHLEV+ +LLE GAD++A+     G TPLH AAK    E V+ L+E 
Sbjct: 5   EDGRTPLHLAASNGHLEVVKLLLENGADVNAKDND--GRTPLHLAAKNGHLEIVKLLLEK 62

Query: 130 GAFLPDDINDSRFNPPLHYCPSLEWAYEEMMRF 162
           GA +  +  D   N PLH          ++++ 
Sbjct: 63  GADV--NARDKDGNTPLHLA--ARNGNLDVVKL 91

The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other types of domains. The structural repeat unit contains two antiparallel helices and a beta-hairpin, repeats are stacked in a superhelical arrangement; this alignment contains 4 consecutive repeats. Length = 126

>gnl|CDD|222984 PHA03100, PHA03100, ankyrin repeat protein; Provisional

 Score = 81.2 bits (201), Expect = 4e-18
 Identities = 40/137 (29%), Positives = 64/137 (46%), Gaps = 24/137 (17%)

Query: 31  TDDRGWTPLHIGA--RKGDIKLVKQLLDEGMDVNVAAWGPKSKGVTPLHLAAQGGH--LE 86
            D+ G TPL      +     +V+ LLD G +VN+      S G   LHL  +     L+
Sbjct: 102 PDNNGITPLLYAISKKSNSYSIVEYLLDNGANVNIK----NSDGENLLHLYLESNKIDLK 157

Query: 87  VMDVLLERGADIDART--------------KGACGWTPLHTAAKERKKEAVRFLIENGAF 132
           ++ +L+++G DI+A+               K   G+TPLH A      E V++L++ GA 
Sbjct: 158 ILKLLIDKGVDINAKNRVNYLLSYGVPINIKDVYGFTPLHYAVYNNNPEFVKYLLDLGAN 217

Query: 133 LPDDINDSRFNPPLHYC 149
            P+ +N    + PLH  
Sbjct: 218 -PNLVNKYG-DTPLHIA 232

Length = 422

>gnl|CDD|223738 COG0666, Arp, FOG: Ankyrin repeat [General function prediction only]

 Score = 74.9 bits (183), Expect = 1e-16
 Identities = 51/137 (37%), Positives = 63/137 (45%), Gaps = 12/137 (8%)

Query: 18  KASRKRFFRSVIDTDDRGWTPLHIGARKGDIKLVKQLLDEGMDVNVAAWGPKSKGVTPLH 77
              +    R +   D  G  PLH  A KGD K+VK LL  G DVN         G TPLH
Sbjct: 56  LLLKLIVDRHLAARDLDGRLPLHSAASKGDDKIVKLLLASGADVNAKDA----DGDTPLH 111

Query: 78  LAA-----QGGHLEVMDVLLERGADID-ARTKGACGWTPLHTAAKERKKEAVRFLIENGA 131
           LAA       G++EV  +LLE GAD+D    +   G TPLH AA     + V  L+E GA
Sbjct: 112 LAALNGNPPEGNIEVAKLLLEAGADLDVNNLRDEDGNTPLHWAALNGDADIVELLLEAGA 171

Query: 132 FLPDDINDSRFNPPLHY 148
               +  +S     L  
Sbjct: 172 DP--NSRNSYGVTALDP 186

Length = 235

>gnl|CDD|205076 pfam12796, Ank_2, Ankyrin repeats (3 copies)

 Score = 69.6 bits (171), Expect = 6e-16
 Identities = 31/65 (47%), Positives = 44/65 (67%), Gaps = 4/65 (6%)

Query: 37  TPLHIGARKGDIKLVKQLLDEGMDVNVAAWGPKSKGVTPLHLAAQGGHLEVMDVLLERGA 96
           T LH+ AR G++++VK LL+ G DVN         G T LHLAA+ G+LE++ +LLE GA
Sbjct: 30  TALHLAARNGNLEIVKLLLEHGADVNA----KDKDGNTALHLAARNGNLEIVKLLLEHGA 85

Query: 97  DIDAR 101
           DI+ +
Sbjct: 86  DINLK 90

Length = 91

>gnl|CDD|223738 COG0666, Arp, FOG: Ankyrin repeat [General function prediction only]

 Score = 70.2 bits (171), Expect = 9e-15
 Identities = 42/119 (35%), Positives = 61/119 (51%), Gaps = 8/119 (6%)

Query: 27  SVIDTDDRGWTPLHIGARKG-----DIKLVKQLLDEGMDVNVAAWGPKSKGVTPLHLAAQ 81
            V   D  G TPLH+ A  G     +I++ K LL+ G D++V        G TPLH AA 
Sbjct: 98  DVNAKDADGDTPLHLAALNGNPPEGNIEVAKLLLEAGADLDVNNL-RDEDGNTPLHWAAL 156

Query: 82  GGHLEVMDVLLERGADIDARTKGACGWTPLHTAAKERKKEAVRFLIENGAFLPDDINDS 140
            G  +++++LLE GAD ++R     G T L  AAK  + E V+ L++ G  L     + 
Sbjct: 157 NGDADIVELLLEAGADPNSRNSY--GVTALDPAAKNGRIELVKLLLDKGLHLSLLKFNL 213

Length = 235

>gnl|CDD|165205 PHA02874, PHA02874, ankyrin repeat protein; Provisional

 Score = 69.6 bits (170), Expect = 5e-14
 Identities = 33/99 (33%), Positives = 53/99 (53%), Gaps = 8/99 (8%)

Query: 50  LVKQLLDEGMDVNVAAWGPKSKGVTPLHLAAQGGHLEVMDVLLERGADIDARTKGACGWT 109
           ++K +LD G+DVN+     + K  T LH A + G LE + +L E GAD++      C   
Sbjct: 106 MIKTILDCGIDVNIK--DAELK--TFLHYAIKKGDLESIKMLFEYGADVNIEDDNGC--Y 159

Query: 110 PLHTAAKERKKEAVRFLIENGAFLPDDINDSRFNPPLHY 148
           P+H A K    + ++ L+E GA+   ++ D+    PLH 
Sbjct: 160 PIHIAIKHNFFDIIKLLLEKGAYA--NVKDNNGESPLHN 196

Length = 434

>gnl|CDD|222939 PHA02878, PHA02878, ankyrin repeat protein; Provisional

 Score = 66.4 bits (162), Expect = 6e-13
 Identities = 35/102 (34%), Positives = 50/102 (49%), Gaps = 7/102 (6%)

Query: 47  DIKLVKQLLDEGMDVNVAAWGPKSKGVTPLHLAAQGGHLEVMDVLLERGADIDARTKGAC 106
           + ++ K LL  G D+N+     + KG T LH A +     + ++LL  GA+++   K   
Sbjct: 146 EAEITKLLLSYGADINMKD---RHKGNTALHYATENKDQRLTELLLSYGANVNIPDK--T 200

Query: 107 GWTPLHTAAKERKKEAVRFLIENGAFLPDDINDSRFNPPLHY 148
             +PLH A K   K  V  L+ENGA    D  D   N PLH 
Sbjct: 201 NNSPLHHAVKHYNKPIVHILLENGAST--DARDKCGNTPLHI 240

Length = 477

>gnl|CDD|222980 PHA03095, PHA03095, ankyrin-like protein; Provisional

 Score = 63.9 bits (156), Expect = 5e-12
 Identities = 38/122 (31%), Positives = 56/122 (45%), Gaps = 16/122 (13%)

Query: 47  DIKLVKQLLDEGMDVNVAAWGPKSKGVTPLHLAAQGGH---LEVMDVLLERGADIDARTK 103
            ++ V++LL  G DVN         G TPLHL          +++ +LLE GAD++A  +
Sbjct: 26  TVEEVRRLLAAGADVNFR----GEYGKTPLHLYLHYSSEKVKDIVRLLLEAGADVNAPER 81

Query: 104 GACGWTPLHTAAKERKKEAV-RFLIENGAFLPDDINDSRF--NPPLHYCPSLEWAYEEMM 160
             CG+TPLH          V + LI+ GA    D+N        PLH   S      +++
Sbjct: 82  --CGFTPLHLYLYNATTLDVIKLLIKAGA----DVNAKDKVGRTPLHVYLSGFNINPKVI 135

Query: 161 RF 162
           R 
Sbjct: 136 RL 137

Length = 471

>gnl|CDD|165205 PHA02874, PHA02874, ankyrin repeat protein; Provisional

 Score = 63.1 bits (153), Expect = 8e-12
 Identities = 39/117 (33%), Positives = 59/117 (50%), Gaps = 10/117 (8%)

Query: 32  DDRGWTPLHIGARKGDIKLVKQLLDEGMDVNVAAWGPKSKGVTPLHLAAQGGHLEVMDVL 91
           DD G  P+HI  +     ++K LL++G   NV      + G +PLH AA+ G    + +L
Sbjct: 154 DDNGCYPIHIAIKHNFFDIIKLLLEKGAYANVK----DNNGESPLHNAAEYGDYACIKLL 209

Query: 92  LERGADIDARTKGACGWTPLHTAAKERKKEAVRFLIENGAFLPDDINDSRFNPPLHY 148
           ++ G  I  + K   G+TPLH A     + A+  LI N +    DI+ S    PLH+
Sbjct: 210 IDHGNHIMNKCKN--GFTPLHNAII-HNRSAIELLINNASINDQDIDGS---TPLHH 260

Length = 434

>gnl|CDD|222277 pfam13637, Ank_4, Ankyrin repeats (many copies)

 Score = 57.2 bits (139), Expect = 1e-11
 Identities = 23/56 (41%), Positives = 32/56 (57%), Gaps = 2/56 (3%)

Query: 72  GVTPLHLAAQGGHLEVMDVLLERGADIDARTKGACGWTPLHTAAKERKKEAVRFLI 127
           G T LH AA  G LE++  LLE+G DI+   +   G T LH AA+    E ++ L+
Sbjct: 1   GRTALHKAAISGRLELVKYLLEKGVDINRTDE--DGNTALHIAAENGNLEVLKLLL 54

Length = 54

>gnl|CDD|165205 PHA02874, PHA02874, ankyrin repeat protein; Provisional

 Score = 61.1 bits (148), Expect = 4e-11
 Identities = 35/111 (31%), Positives = 57/111 (51%), Gaps = 8/111 (7%)

Query: 37  TPLHIGARKGDIKLVKQLLDEGMDVNVAAWGPKSKGVTPLHLAAQGGHLEVMDVLLERGA 96
           T LH   +KGD++ +K L + G DVN+        G  P+H+A +    +++ +LLE+GA
Sbjct: 126 TFLHYAIKKGDLESIKMLFEYGADVNIE----DDNGCYPIHIAIKHNFFDIIKLLLEKGA 181

Query: 97  DIDARTKGACGWTPLHTAAKERKKEAVRFLIENGAFLPDDINDSRFNPPLH 147
              A  K   G +PLH AA+      ++ LI++G  + +         PLH
Sbjct: 182 --YANVKDNNGESPLHNAAEYGDYACIKLLIDHGNHIMNKCK--NGFTPLH 228

Length = 434

>gnl|CDD|222984 PHA03100, PHA03100, ankyrin repeat protein; Provisional

 Score = 60.8 bits (148), Expect = 5e-11
 Identities = 36/121 (29%), Positives = 55/121 (45%), Gaps = 19/121 (15%)

Query: 37  TPLHIGARKGDIKLVKQLLDEGMDVNVAAWGPKSKGVTPLHLAAQGGH-----LEVMDVL 91
            PL++     +I +VK LLD G D+N +         TPLH  +   +      E++ +L
Sbjct: 37  LPLYLAKEARNIDVVKILLDNGADINSST----KNNSTPLHYLSNIKYNLTDVKEIVKLL 92

Query: 92  LERGADIDARTKGACGWTPLHTAA--KERKKEAVRFLIENGAFLPDDIND--SRFNPPLH 147
           LE GA+++A        TPL  A   K      V +L++NGA    ++N   S     LH
Sbjct: 93  LEYGANVNAPDNNGI--TPLLYAISKKSNSYSIVEYLLDNGA----NVNIKNSDGENLLH 146

Query: 148 Y 148
            
Sbjct: 147 L 147

Length = 422

>gnl|CDD|222939 PHA02878, PHA02878, ankyrin repeat protein; Provisional

 Score = 60.3 bits (146), Expect = 7e-11
 Identities = 35/104 (33%), Positives = 52/104 (50%), Gaps = 7/104 (6%)

Query: 29  IDTDDRGWTPLHIGARKGDIKLVKQLLDEGMDVNVAAWGPKSKGVTPLHLAAQGGHLEVM 88
           +    +G T LH      D +L + LL  G +VN+      S    PLH A +  +  ++
Sbjct: 162 MKDRHKGNTALHYATENKDQRLTELLLSYGANVNIPDKTNNS----PLHHAVKHYNKPIV 217

Query: 89  DVLLERGADIDARTKGACGWTPLHTAAKERKK-EAVRFLIENGA 131
            +LLE GA  DAR K  CG TPLH +    K  + ++ L+E+G 
Sbjct: 218 HILLENGASTDARDK--CGNTPLHISVGYCKDYDILKLLLEHGV 259

Length = 477

>gnl|CDD|222980 PHA03095, PHA03095, ankyrin-like protein; Provisional

 Score = 60.4 bits (147), Expect = 7e-11
 Identities = 40/116 (34%), Positives = 52/116 (44%), Gaps = 14/116 (12%)

Query: 27  SVIDTDDRGWTPLHIGAR--KGDIKLVKQLLDEGMDVNVAAWGPKSKGVTPLHLAAQGGH 84
            V   DDR  + LH   +  K   ++V++L+  G D           G TPLH  A G  
Sbjct: 179 DVYAVDDRFRSLLHHHLQSFKPRARIVRELIRAGCDPA----ATDMLGNTPLHSMATGSS 234

Query: 85  LE--VMDVLLERGADIDARTKGACGWTPLHTAAKERKKEAVRFLIENGAFLPDDIN 138
            +  ++  LL  G  I+AR +   G TPLH AA      A R LI  GA    DIN
Sbjct: 235 CKRSLVLPLLIAGISINARNRY--GQTPLHYAAVFNNPRACRRLIALGA----DIN 284

Length = 471

>gnl|CDD|165206 PHA02875, PHA02875, ankyrin repeat protein; Provisional

 Score = 60.0 bits (145), Expect = 9e-11
 Identities = 38/112 (33%), Positives = 56/112 (50%), Gaps = 7/112 (6%)

Query: 37  TPLHIGARKGDIKLVKQLLDEGMDVNVAAWGPKSKGVTPLHLAAQGGHLEVMDVLLERGA 96
           + LH    +GD+K V++LLD G   +   +     G+TPLHLA     L++M +L+ RGA
Sbjct: 70  SELHDAVEEGDVKAVEELLDLGKFADDVFY---KDGMTPLHLATILKKLDIMKLLIARGA 126

Query: 97  DIDARTKGACGWTPLHTAAKERKKEAVRFLIENGAFLPDDINDSRFNPPLHY 148
           D D        ++PLH A      + +  LI++ A L  DI D     PL  
Sbjct: 127 DPDIPNTDK--FSPLHLAVMMGDIKGIELLIDHKACL--DIEDCCGCTPLII 174

Length = 413

>gnl|CDD|200936 pfam00023, Ank, Ankyrin repeat

 Score = 52.9 bits (128), Expect = 3e-10
 Identities = 22/33 (66%), Positives = 27/33 (81%)

Query: 71  KGVTPLHLAAQGGHLEVMDVLLERGADIDARTK 103
            G TPLHLAA+ GHLEV+ +LLE GAD++AR K
Sbjct: 1   DGNTPLHLAARNGHLEVVKLLLEAGADVNARDK 33

Ankyrins are multifunctional adaptors that link specific proteins to the membrane-associated, spectrin- actin cytoskeleton. This repeat-domain is a 'membrane-binding' domain of up to 24 repeated units, and it mediates most of the protein's binding activities. Repeats 13-24 are especially active, with known sites of interaction for the Na/K ATPase, Cl/HCO(3) anion exchanger, voltage-gated sodium channel, clathrin heavy chain and L1 family cell adhesion molecules. The ANK repeats are found to form a contiguous spiral stack such that ion transporters like the anion exchanger associate in a large central cavity formed by the ANK repeat spiral, while clathrin and cell adhesion molecules associate with specific regions outside this cavity. Length = 33

>gnl|CDD|222984 PHA03100, PHA03100, ankyrin repeat protein; Provisional

 Score = 57.0 bits (138), Expect = 9e-10
 Identities = 36/112 (32%), Positives = 53/112 (47%), Gaps = 16/112 (14%)

Query: 34  RGWTPLHIGAR--KGDIKLVKQLLDEGMDVNVA-------AWG-----PKSKGVTPLHLA 79
            G   LH+     K D+K++K L+D+G+D+N         ++G         G TPLH A
Sbjct: 140 DGENLLHLYLESNKIDLKILKLLIDKGVDINAKNRVNYLLSYGVPINIKDVYGFTPLHYA 199

Query: 80  AQGGHLEVMDVLLERGADIDARTKGACGWTPLHTAAKERKKEAVRFLIENGA 131
               + E +  LL+ GA+ +   K   G TPLH A     KE  + L+ NG 
Sbjct: 200 VYNNNPEFVKYLLDLGANPNLVNKY--GDTPLHIAILNNNKEIFKLLLNNGP 249

Length = 422

>gnl|CDD|222980 PHA03095, PHA03095, ankyrin-like protein; Provisional

 Score = 55.8 bits (135), Expect = 2e-09
 Identities = 45/128 (35%), Positives = 65/128 (50%), Gaps = 18/128 (14%)

Query: 29  IDTDDR-GWTPLHIGARKGD-IKLVKQLLDEGMDVNVAAWGPKSK-GVTPLH--LAAQGG 83
           ++  +R G+TPLH+       + ++K L+  G DVN      K K G TPLH  L+    
Sbjct: 76  VNAPERCGFTPLHLYLYNATTLDVIKLLIKAGADVNA-----KDKVGRTPLHVYLSGFNI 130

Query: 84  HLEVMDVLLERGADIDARTKGACGWTPLHTAAKERKK--EAVRFLIENGAFLPDDIN-DS 140
           + +V+ +LL +GAD++A      G TPL    K R    E +R LI+ GA   D    D 
Sbjct: 131 NPKVIRLLLRKGADVNALDL--YGMTPLAVLLKSRNANVELLRLLIDAGA---DVYAVDD 185

Query: 141 RFNPPLHY 148
           RF   LH+
Sbjct: 186 RFRSLLHH 193

Length = 471

>gnl|CDD|222984 PHA03100, PHA03100, ankyrin repeat protein; Provisional

 Score = 55.1 bits (133), Expect = 5e-09
 Identities = 25/73 (34%), Positives = 35/73 (47%), Gaps = 5/73 (6%)

Query: 29  ID-TDDRGWTPLHIGARKGDIKLVKQLLDEGMDVNVAAWGPKSKGVTPLHLAAQGGHLEV 87
           I+  D  G+TPLH      + + VK LLD G + N+        G TPLH+A    + E+
Sbjct: 185 INIKDVYGFTPLHYAVYNNNPEFVKYLLDLGANPNLVN----KYGDTPLHIAILNNNKEI 240

Query: 88  MDVLLERGADIDA 100
             +LL  G  I  
Sbjct: 241 FKLLLNNGPSIKT 253

Length = 422

>gnl|CDD|206028 pfam13857, Ank_5, Ankyrin repeats (many copies)

 Score = 49.7 bits (119), Expect = 8e-09
 Identities = 24/61 (39%), Positives = 31/61 (50%), Gaps = 5/61 (8%)

Query: 54  LLDEGMDVNVAAWGPKSKGVTPLHLAAQGGHLEVMDVLLERGADIDARTKGACGWTPLHT 113
           LL+ G     A       G TPLHLAA+ G LE++  LL+ G D++ R     G T L  
Sbjct: 1   LLEHGPIDLNA---TDGNGNTPLHLAAKYGALELVQWLLKPGVDLNLRDS--DGLTALDL 55

Query: 114 A 114
           A
Sbjct: 56  A 56

Length = 56

>gnl|CDD|222277 pfam13637, Ank_4, Ankyrin repeats (many copies)

 Score = 49.5 bits (119), Expect = 9e-09
 Identities = 26/58 (44%), Positives = 37/58 (63%), Gaps = 4/58 (6%)

Query: 35 GWTPLHIGARKGDIKLVKQLLDEGMDVNVAAWGPKSKGVTPLHLAAQGGHLEVMDVLL 92
          G T LH  A  G ++LVK LL++G+D+N         G T LH+AA+ G+LEV+ +LL
Sbjct: 1  GRTALHKAAISGRLELVKYLLEKGVDINR----TDEDGNTALHIAAENGNLEVLKLLL 54

Length = 54

>gnl|CDD|165206 PHA02875, PHA02875, ankyrin repeat protein; Provisional

 Score = 53.1 bits (127), Expect = 2e-08
 Identities = 28/98 (28%), Positives = 51/98 (52%), Gaps = 6/98 (6%)

Query: 34  RGWTPLHIGARKGDIKLVKQLLDEGMDVNVAAWGPKSKGVTPLHLAAQGGHLEVMDVLLE 93
            G TPLH+      + ++K L+  G D ++    P +   +PLHLA   G ++ +++L++
Sbjct: 101 DGMTPLHLATILKKLDIMKLLIARGADPDI----PNTDKFSPLHLAVMMGDIKGIELLID 156

Query: 94  RGADIDARTKGACGWTPLHTAAKERKKEAVRFLIENGA 131
             A +D   +  CG TPL  A  +      + L+++GA
Sbjct: 157 HKACLD--IEDCCGCTPLIIAMAKGDIAICKMLLDSGA 192

Length = 413

>gnl|CDD|165206 PHA02875, PHA02875, ankyrin repeat protein; Provisional

 Score = 52.7 bits (126), Expect = 3e-08
 Identities = 37/128 (28%), Positives = 59/128 (46%), Gaps = 14/128 (10%)

Query: 12  PFTLQRKASRKRFFRSVI----DTD----DRGWTPLHIGARKGDIKLVKQLLDEGMDVNV 63
           P  L     +    + +I    D D    D+ ++PLH+    GDIK ++ L+D    +++
Sbjct: 105 PLHLATILKKLDIMKLLIARGADPDIPNTDK-FSPLHLAVMMGDIKGIELLIDHKACLDI 163

Query: 64  AAWGPKSKGVTPLHLAAQGGHLEVMDVLLERGADIDARTKGACGWTPLHTAAKERKKEAV 123
                   G TPL +A   G + +  +LL+ GA+ID   K  C    L  A +  K + V
Sbjct: 164 E----DCCGCTPLIIAMAKGDIAICKMLLDSGANIDYFGKNGC-VAALCYAIENNKIDIV 218

Query: 124 RFLIENGA 131
           R  I+ GA
Sbjct: 219 RLFIKRGA 226

Length = 413

>gnl|CDD|222939 PHA02878, PHA02878, ankyrin repeat protein; Provisional

 Score = 51.4 bits (123), Expect = 7e-08
 Identities = 33/106 (31%), Positives = 57/106 (53%), Gaps = 18/106 (16%)

Query: 37  TPLHIGARKGDIKLVKQLLDEGMDVNVAAWGPKSK-GVTPLHLAAQGGHL---EVMDVLL 92
           +PLH   +  +  +V  LL+ G   +      + K G TPLH++   G+    +++ +LL
Sbjct: 203 SPLHHAVKHYNKPIVHILLENGASTDA-----RDKCGNTPLHISV--GYCKDYDILKLLL 255

Query: 93  ERGADIDARTKGACGWTPLHTAAKERKKEAVRFLIENGAFLPDDIN 138
           E G D++A++    G T LH++ K  +K  ++ L+E GA    DIN
Sbjct: 256 EHGVDVNAKSY-ILGLTALHSSIKSERK--LKLLLEYGA----DIN 294

Length = 477

>gnl|CDD|215625 PLN03192, PLN03192, Voltage-dependent potassium channel; Provisional

 Score = 51.8 bits (124), Expect = 7e-08
 Identities = 39/128 (30%), Positives = 50/128 (39%), Gaps = 29/128 (22%)

Query: 31  TDDRGWTPLHIGARKGDIKLVKQLLDEGMDVNV-------AAWGPKSKG----------- 72
            D +G TPLHI A KG    V  LL    +V++       A W   S             
Sbjct: 554 GDSKGRTPLHIAASKGYEDCVLVLLKHACNVHIRDANGNTALWNAISAKHHKIFRILYHF 613

Query: 73  ---VTP------LHLAAQGGHLEVMDVLLERGADIDARTKGACGWTPLHTAAKERKKEAV 123
                P      L  AA+   L  M  LL++G ++D+      G T L  A  E   + V
Sbjct: 614 ASISDPHAAGDLLCTAAKRNDLTAMKELLKQGLNVDSEDHQ--GATALQVAMAEDHVDMV 671

Query: 124 RFLIENGA 131
           R LI NGA
Sbjct: 672 RLLIMNGA 679

Length = 823

>gnl|CDD|165207 PHA02876, PHA02876, ankyrin repeat protein; Provisional

 Score = 51.6 bits (123), Expect = 8e-08
 Identities = 42/120 (35%), Positives = 62/120 (51%), Gaps = 17/120 (14%)

Query: 45  KGDIKLVKQLLDEGMDVNV----AAWGPKSKGV---TPLHLAAQGGHL-EVMDVLLERGA 96
           K D+ L+K + +E ++ ++    A +   S      TPLH A+Q   L  ++  LLERGA
Sbjct: 239 KNDLSLLKAIRNEDLETSLLLYDAGFSVNSIDDCKNTPLHHASQAPSLSRLVPKLLERGA 298

Query: 97  DIDARTKGACGWTPLHTAAKE-RKKEAVRFLIENGAFLPDDIN--DSRFNPPLHYCPSLE 153
           D++A  K   G TPL+  AK     E +R LI  GA    D+N  D  +  PLH   +L+
Sbjct: 299 DVNA--KNIKGETPLYLMAKNGYDTENIRTLIMLGA----DVNAADRLYITPLHQASTLD 352

Length = 682

>gnl|CDD|222980 PHA03095, PHA03095, ankyrin-like protein; Provisional

 Score = 50.8 bits (122), Expect = 1e-07
 Identities = 36/101 (35%), Positives = 44/101 (43%), Gaps = 15/101 (14%)

Query: 20  SRKRFFRSVID-------TDDRGWTPLHIGARKGDIK--LVKQLLDEGMDVNVAAWGPKS 70
            R R  R +I        TD  G TPLH  A     K  LV  LL  G+ +N        
Sbjct: 200 PRARIVRELIRAGCDPAATDMLGNTPLHSMATGSSCKRSLVLPLLIAGISINA----RNR 255

Query: 71  KGVTPLHLAAQGGHLEVMDVLLERGADIDARTKGACGWTPL 111
            G TPLH AA   +      L+  GADI+A +  + G TPL
Sbjct: 256 YGQTPLHYAAVFNNPRACRRLIALGADINAVS--SDGNTPL 294

Length = 471

>gnl|CDD|233161 TIGR00870, trp, transient-receptor-potential calcium channel protein

 Score = 48.5 bits (116), Expect = 9e-07
 Identities = 36/116 (31%), Positives = 50/116 (43%), Gaps = 19/116 (16%)

Query: 29  IDTDD--RGWTPLHIGARKGDIKLVKQLLDEGMDVNVAAWGP---KSKGVT-------PL 76
             T +   G T LH+ A + + ++VK LL+ G  V   A G    KS+GV        PL
Sbjct: 120 QYTSEFTPGITALHLAAHRQNYEIVKLLLERGASVPARACGDFFVKSQGVDSFYHGESPL 179

Query: 77  HLAAQGGHLEVMDVLLERGADIDARTKGACGWTPLHTAAKERKKEAVRFLIENGAF 132
           + AA  G   ++ +L E  ADI   T  + G T LH    E +     F  E    
Sbjct: 180 NAAACLGSPSIVALLSEDPADI--LTADSLGNTLLHLLVMENE-----FKAEYEEL 228

The Transient Receptor Potential Ca2+ Channel (TRP-CC) Family (TC. 1.A.4)The TRP-CC family has also been called the store-operated calcium channel (SOC) family. The prototypical members include the Drosophila retinal proteinsTRP and TRPL (Montell and Rubin, 1989; Hardie and Minke, 1993). SOC members of the family mediate the entry of extracellular Ca2+ into cells in responseto depletion of intracellular Ca2+ stores (Clapham, 1996) and agonist stimulated production of inositol-1,4,5 trisphosphate (IP3). One member of the TRP-CCfamily, mammalian Htrp3, has been shown to form a tight complex with the IP3 receptor (TC #1.A.3.2.1). This interaction is apparently required for IP3 tostimulate Ca2+ release via Htrp3. The vanilloid receptor subtype 1 (VR1), which is the receptor for capsaicin (the ?hot? ingredient in chili peppers) and servesas a heat-activated ion channel in the pain pathway (Caterina et al., 1997), is also a member of this family. The stretch-inhibitable non-selective cation channel(SIC) is identical to the vanilloid receptor throughout all of its first 700 residues, but it exhibits a different sequence in its last 100 residues. VR1 and SICtransport monovalent cations as well as Ca2+. VR1 is about 10x more permeable to Ca2+ than to monovalent ions. Ca2+ overload probably causes cell deathafter chronic exposure to capsaicin. (McCleskey and Gold, 1999) [Transport and binding proteins, Cations and iron carrying compounds]. Length = 743

>gnl|CDD|140343 PTZ00322, PTZ00322, 6-phosphofructo-2-kinase/fructose-2,6-biphosphatase; Provisional

 Score = 48.4 bits (115), Expect = 9e-07
 Identities = 33/84 (39%), Positives = 42/84 (50%), Gaps = 6/84 (7%)

Query: 43  ARKGDIKLVKQLLDEGMDVNVAAWGPKSKGVTPLHLAAQGGHLEVMDVLLERGADIDART 102
           A  GD    + LL  G D N   +     G TPLH+A   GH++V+ VLLE GAD     
Sbjct: 90  AASGDAVGARILLTGGADPNCRDY----DGRTPLHIACANGHVQVVRVLLEFGADPTLLD 145

Query: 103 KGACGWTPLHTAAKERKKEAVRFL 126
           K   G TPL  A +   +E V+ L
Sbjct: 146 KD--GKTPLELAEENGFREVVQLL 167

Length = 664

>gnl|CDD|205784 pfam13606, Ank_3, Ankyrin repeat

 Score = 43.0 bits (102), Expect = 1e-06
 Identities = 19/30 (63%), Positives = 25/30 (83%)

Query: 71  KGVTPLHLAAQGGHLEVMDVLLERGADIDA 100
            G TPLHLAA+ G+LE++ +LLE GADI+A
Sbjct: 1   DGNTPLHLAARNGNLELVKLLLEHGADINA 30

Ankyrins are multifunctional adaptors that link specific proteins to the membrane-associated, spectrin- actin cytoskeleton. This repeat-domain is a 'membrane-binding' domain of up to 24 repeated units, and it mediates most of the protein's binding activities. Length = 30

>gnl|CDD|222939 PHA02878, PHA02878, ankyrin repeat protein; Provisional

 Score = 47.2 bits (112), Expect = 2e-06
 Identities = 34/100 (34%), Positives = 49/100 (49%), Gaps = 15/100 (15%)

Query: 35  GWTPLHIG-ARKGDIKLVKQLLDEGMDVNVAAWGPKSKGVTPLHLAAQGGHLEVMDVLLE 93
           G TPLHI      D  ++K LL+ G+DVN  ++     G+T LH + +      + +LLE
Sbjct: 234 GNTPLHISVGYCKDYDILKLLLEHGVDVNAKSY---ILGLTALHSSIKSE--RKLKLLLE 288

Query: 94  RGADIDARTKGACGW---TPLHTAAKERKK-EAVRFLIEN 129
            GADI+     +      TPL +A K+       R LI N
Sbjct: 289 YGADIN-----SLNSYKLTPLSSAVKQYLCINIGRILISN 323

Length = 477

>gnl|CDD|197603 smart00248, ANK, ankyrin repeats

 Score = 43.0 bits (102), Expect = 2e-06
 Identities = 19/30 (63%), Positives = 26/30 (86%)

Query: 71  KGVTPLHLAAQGGHLEVMDVLLERGADIDA 100
            G TPLHLAA+ G+LEV+ +LL++GADI+A
Sbjct: 1   DGRTPLHLAAENGNLEVVKLLLDKGADINA 30

Ankyrin repeats are about 33 amino acids long and occur in at least four consecutive copies. They are involved in protein-protein interactions. The core of the repeat seems to be an helix-loop-helix structure. Length = 30

>gnl|CDD|222984 PHA03100, PHA03100, ankyrin repeat protein; Provisional

 Score = 46.2 bits (110), Expect = 4e-06
 Identities = 32/120 (26%), Positives = 58/120 (48%), Gaps = 13/120 (10%)

Query: 48  IKLVKQLLDEGMDVNVAAWGPKSKGVTPLHLAAQGGHLEVMDVLLERGADIDARTKGACG 107
           +K +K ++ E    + +   P    V PL+LA +  +++V+ +LL+ GADI++ TK    
Sbjct: 15  VKNIKYIIMEDDLNDYSYKKP----VLPLYLAKEARNIDVVKILLDNGADINSSTKNNST 70

Query: 108 WTPLHTAAK---ERKKEAVRFLIENGAFLPDDIN--DSRFNPPLHYCPSLEWAYEEMMRF 162
                +  K      KE V+ L+E GA    ++N  D+    PL Y  S +     ++ +
Sbjct: 71  PLHYLSNIKYNLTDVKEIVKLLLEYGA----NVNAPDNNGITPLLYAISKKSNSYSIVEY 126

Length = 422

>gnl|CDD|205076 pfam12796, Ank_2, Ankyrin repeats (3 copies)

 Score = 41.9 bits (99), Expect = 1e-05
 Identities = 16/36 (44%), Positives = 24/36 (66%)

Query: 28 VIDTDDRGWTPLHIGARKGDIKLVKQLLDEGMDVNV 63
          V   D  G T LH+ AR G++++VK LL+ G D+N+
Sbjct: 54 VNAKDKDGNTALHLAARNGNLEIVKLLLEHGADINL 89

Length = 91

>gnl|CDD|200936 pfam00023, Ank, Ankyrin repeat

 Score = 40.6 bits (96), Expect = 1e-05
 Identities = 16/29 (55%), Positives = 21/29 (72%)

Query: 35 GWTPLHIGARKGDIKLVKQLLDEGMDVNV 63
          G TPLH+ AR G +++VK LL+ G DVN 
Sbjct: 2  GNTPLHLAARNGHLEVVKLLLEAGADVNA 30

Ankyrins are multifunctional adaptors that link specific proteins to the membrane-associated, spectrin- actin cytoskeleton. This repeat-domain is a 'membrane-binding' domain of up to 24 repeated units, and it mediates most of the protein's binding activities. Repeats 13-24 are especially active, with known sites of interaction for the Na/K ATPase, Cl/HCO(3) anion exchanger, voltage-gated sodium channel, clathrin heavy chain and L1 family cell adhesion molecules. The ANK repeats are found to form a contiguous spiral stack such that ion transporters like the anion exchanger associate in a large central cavity formed by the ANK repeat spiral, while clathrin and cell adhesion molecules associate with specific regions outside this cavity. Length = 33

>gnl|CDD|233161 TIGR00870, trp, transient-receptor-potential calcium channel protein

 Score = 45.1 bits (107), Expect = 1e-05
 Identities = 38/140 (27%), Positives = 56/140 (40%), Gaps = 26/140 (18%)

Query: 70  SKGVTPLHLAAQGGHLEVMDVLLERGADIDARTKGA-C-----------GWTPLHTAAKE 117
           + G+T LHLAA   + E++ +LLERGA + AR  G              G +PL+ AA  
Sbjct: 126 TPGITALHLAAHRQNYEIVKLLLERGASVPARACGDFFVKSQGVDSFYHGESPLNAAACL 185

Query: 118 RKKEAVRFLIENGAFLPDDINDSRFNPPLHYCPSLEWAYEEMMRFQRESFSAGETSYSSE 177
                V  L E+ A    DI  +          SL      ++  + E F A     S +
Sbjct: 186 GSPSIVALLSEDPA----DIL-TAD--------SLGNTLLHLLVMENE-FKAEYEELSCQ 231

Query: 178 KLNALSRLLVHMMPLLWLDL 197
             N    LL  +     L++
Sbjct: 232 MYNFALSLLDKLRDSKELEV 251

The Transient Receptor Potential Ca2+ Channel (TRP-CC) Family (TC. 1.A.4)The TRP-CC family has also been called the store-operated calcium channel (SOC) family. The prototypical members include the Drosophila retinal proteinsTRP and TRPL (Montell and Rubin, 1989; Hardie and Minke, 1993). SOC members of the family mediate the entry of extracellular Ca2+ into cells in responseto depletion of intracellular Ca2+ stores (Clapham, 1996) and agonist stimulated production of inositol-1,4,5 trisphosphate (IP3). One member of the TRP-CCfamily, mammalian Htrp3, has been shown to form a tight complex with the IP3 receptor (TC #1.A.3.2.1). This interaction is apparently required for IP3 tostimulate Ca2+ release via Htrp3. The vanilloid receptor subtype 1 (VR1), which is the receptor for capsaicin (the ?hot? ingredient in chili peppers) and servesas a heat-activated ion channel in the pain pathway (Caterina et al., 1997), is also a member of this family. The stretch-inhibitable non-selective cation channel(SIC) is identical to the vanilloid receptor throughout all of its first 700 residues, but it exhibits a different sequence in its last 100 residues. VR1 and SICtransport monovalent cations as well as Ca2+. VR1 is about 10x more permeable to Ca2+ than to monovalent ions. Ca2+ overload probably causes cell deathafter chronic exposure to capsaicin. (McCleskey and Gold, 1999) [Transport and binding proteins, Cations and iron carrying compounds]. Length = 743

>gnl|CDD|197603 smart00248, ANK, ankyrin repeats

 Score = 39.5 bits (93), Expect = 2e-05
 Identities = 15/30 (50%), Positives = 22/30 (73%)

Query: 34 RGWTPLHIGARKGDIKLVKQLLDEGMDVNV 63
           G TPLH+ A  G++++VK LLD+G D+N 
Sbjct: 1  DGRTPLHLAAENGNLEVVKLLLDKGADINA 30

Ankyrin repeats are about 33 amino acids long and occur in at least four consecutive copies. They are involved in protein-protein interactions. The core of the repeat seems to be an helix-loop-helix structure. Length = 30

>gnl|CDD|165205 PHA02874, PHA02874, ankyrin repeat protein; Provisional

 Score = 43.8 bits (103), Expect = 3e-05
 Identities = 28/87 (32%), Positives = 38/87 (43%), Gaps = 16/87 (18%)

Query: 32  DDRGWTPLHIGARKGDIKLVKQLLDEGMDVNVAAWGPKSKGVTPLHLAAQGGHLEVMDVL 91
           D+ G +PLH  A  GD   +K L+D G  +          G TPLH A        +++L
Sbjct: 187 DNNGESPLHNAAEYGDYACIKLLIDHGNHIMNKC----KNGFTPLHNAIIHNR-SAIELL 241

Query: 92  LERGA----DIDARTKGACGWTPLHTA 114
           +   +    DID       G TPLH A
Sbjct: 242 INNASINDQDID-------GSTPLHHA 261

Length = 434

>gnl|CDD|165206 PHA02875, PHA02875, ankyrin repeat protein; Provisional

 Score = 43.4 bits (102), Expect = 3e-05
 Identities = 24/73 (32%), Positives = 41/73 (56%), Gaps = 4/73 (5%)

Query: 26  RSVIDTDD-RGWTPLHIGARKGDIKLVKQLLDEGMDVNVAAWGPKSKGVTPLHLAAQGGH 84
           ++ +D +D  G TPL I   KGDI + K LLD G +++      K+  V  L  A +   
Sbjct: 158 KACLDIEDCCGCTPLIIAMAKGDIAICKMLLDSGANIDYFG---KNGCVAALCYAIENNK 214

Query: 85  LEVMDVLLERGAD 97
           ++++ + ++RGAD
Sbjct: 215 IDIVRLFIKRGAD 227

Length = 413

>gnl|CDD|200936 pfam00023, Ank, Ankyrin repeat

 Score = 39.5 bits (93), Expect = 3e-05
 Identities = 15/32 (46%), Positives = 19/32 (59%), Gaps = 4/32 (12%)

Query: 107 GWTPLHTAAKERKKEAVRFLIENGAFLPDDIN 138
           G TPLH AA+    E V+ L+E GA    D+N
Sbjct: 2   GNTPLHLAARNGHLEVVKLLLEAGA----DVN 29

Ankyrins are multifunctional adaptors that link specific proteins to the membrane-associated, spectrin- actin cytoskeleton. This repeat-domain is a 'membrane-binding' domain of up to 24 repeated units, and it mediates most of the protein's binding activities. Repeats 13-24 are especially active, with known sites of interaction for the Na/K ATPase, Cl/HCO(3) anion exchanger, voltage-gated sodium channel, clathrin heavy chain and L1 family cell adhesion molecules. The ANK repeats are found to form a contiguous spiral stack such that ion transporters like the anion exchanger associate in a large central cavity formed by the ANK repeat spiral, while clathrin and cell adhesion molecules associate with specific regions outside this cavity. Length = 33

>gnl|CDD|205784 pfam13606, Ank_3, Ankyrin repeat

 Score = 39.2 bits (92), Expect = 3e-05
 Identities = 16/33 (48%), Positives = 20/33 (60%), Gaps = 4/33 (12%)

Query: 106 CGWTPLHTAAKERKKEAVRFLIENGAFLPDDIN 138
            G TPLH AA+    E V+ L+E+GA    DIN
Sbjct: 1   DGNTPLHLAARNGNLELVKLLLEHGA----DIN 29

Ankyrins are multifunctional adaptors that link specific proteins to the membrane-associated, spectrin- actin cytoskeleton. This repeat-domain is a 'membrane-binding' domain of up to 24 repeated units, and it mediates most of the protein's binding activities. Length = 30

>gnl|CDD|205784 pfam13606, Ank_3, Ankyrin repeat

 Score = 38.8 bits (91), Expect = 6e-05
 Identities = 16/29 (55%), Positives = 22/29 (75%)

Query: 35 GWTPLHIGARKGDIKLVKQLLDEGMDVNV 63
          G TPLH+ AR G+++LVK LL+ G D+N 
Sbjct: 2  GNTPLHLAARNGNLELVKLLLEHGADINA 30

Ankyrins are multifunctional adaptors that link specific proteins to the membrane-associated, spectrin- actin cytoskeleton. This repeat-domain is a 'membrane-binding' domain of up to 24 repeated units, and it mediates most of the protein's binding activities. Length = 30

>gnl|CDD|165205 PHA02874, PHA02874, ankyrin repeat protein; Provisional

 Score = 42.6 bits (100), Expect = 7e-05
 Identities = 37/132 (28%), Positives = 56/132 (42%), Gaps = 27/132 (20%)

Query: 37  TPLHIGARKGDIKLVKQLLDEGMDVNVAAWGPKSKGVTPLHLAAQGGHLEVMDVLLERGA 96
           TPL    R GD K+V+  +  G D+N       +K   PL  A + G  +++ +L++ G 
Sbjct: 37  TPLIDAIRSGDAKIVELFIKHGADINHI----NTKIPHPLLTAIKIGAHDIIKLLIDNGV 92

Query: 97  D---------------------IDARTKGACGWTPLHTAAKERKKEAVRFLIENGAFLPD 135
           D                     ID   K A   T LH A K+   E+++ L E GA +  
Sbjct: 93  DTSILPIPCIEKDMIKTILDCGIDVNIKDAELKTFLHYAIKKGDLESIKMLFEYGADV-- 150

Query: 136 DINDSRFNPPLH 147
           +I D     P+H
Sbjct: 151 NIEDDNGCYPIH 162

Length = 434

>gnl|CDD|222277 pfam13637, Ank_4, Ankyrin repeats (many copies)

 Score = 38.4 bits (90), Expect = 1e-04
 Identities = 18/45 (40%), Positives = 22/45 (48%), Gaps = 6/45 (13%)

Query: 107 GWTPLHTAAKERKKEAVRFLIENGAFLPDDIN--DSRFNPPLHYC 149
           G T LH AA   + E V++L+E G     DIN  D   N  LH  
Sbjct: 1   GRTALHKAAISGRLELVKYLLEKGV----DINRTDEDGNTALHIA 41

Length = 54

>gnl|CDD|165207 PHA02876, PHA02876, ankyrin repeat protein; Provisional

 Score = 42.0 bits (98), Expect = 1e-04
 Identities = 40/122 (32%), Positives = 61/122 (50%), Gaps = 14/122 (11%)

Query: 31  TDDRGWTPLHIGA---RKGDIKLVKQLLDEGMDVNVAAWGPKSKGVTPLHLAAQGGHLEV 87
            D    TPLH  +   R  DI  V  LL+ G +VN   +  K    TP+H AA   ++ +
Sbjct: 337 ADRLYITPLHQASTLDRNKDI--VITLLELGANVNARDYCDK----TPIHYAAVRNNVVI 390

Query: 88  MDVLLERGADIDARTKGACGWTPLHTA-AKERKKEAVRFLIENGAFLPDDINDSRFNPPL 146
           ++ LL+ GADI+A ++     T LH A        +V+ LI+ GA +  +  +   + PL
Sbjct: 391 INTLLDYGADIEALSQKI--GTALHFALCGTNPYMSVKTLIDRGANV--NSKNKDLSTPL 446

Query: 147 HY 148
           HY
Sbjct: 447 HY 448

Length = 682

>gnl|CDD|165207 PHA02876, PHA02876, ankyrin repeat protein; Provisional

 Score = 41.6 bits (97), Expect = 1e-04
 Identities = 32/119 (26%), Positives = 55/119 (46%), Gaps = 15/119 (12%)

Query: 37  TPLHIGARKGDIKLVKQLLDEGMDVNVAAWGPKSKGVTPLHLAAQGGHLEVMDVLLERGA 96
           TP+H  A +G+ K+V  LL  G DVN+ A       ++ L  A    +++ +  +++  +
Sbjct: 180 TPIHYAAERGNAKMVNLLLSYGADVNIIAL----DDLSVLECAVDSKNIDTIKAIIDNRS 235

Query: 97  DIDARTKGACGWTPLHTAAKERKKEAVRFLIENGAFLPDDINDSRFNPPLHYC---PSL 152
           +I+           L  A +    E    L + G F  + I+D + N PLH+    PSL
Sbjct: 236 NINKND------LSLLKAIRNEDLETSLLLYDAG-FSVNSIDDCK-NTPLHHASQAPSL 286

Length = 682

>gnl|CDD|215625 PLN03192, PLN03192, Voltage-dependent potassium channel; Provisional

 Score = 41.0 bits (96), Expect = 2e-04
 Identities = 18/62 (29%), Positives = 36/62 (58%), Gaps = 4/62 (6%)

Query: 39  LHIGARKGDIKLVKQLLDEGMDVNVAAWGPKSKGVTPLHLAAQGGHLEVMDVLLERGADI 98
           L   A++ D+  +K+LL +G++V+        +G T L +A    H++++ +L+  GAD+
Sbjct: 626 LCTAAKRNDLTAMKELLKQGLNVD----SEDHQGATALQVAMAEDHVDMVRLLIMNGADV 681

Query: 99  DA 100
           D 
Sbjct: 682 DK 683

Length = 823

>gnl|CDD|222931 PHA02798, PHA02798, ankyrin-like protein; Provisional

 Score = 40.6 bits (95), Expect = 3e-04
 Identities = 27/92 (29%), Positives = 45/92 (48%), Gaps = 14/92 (15%)

Query: 48  IKLVKQLLDEGMDVNVAAWGPKSKGVTPL-----HLAAQGGHLEVMDVLLERGADIDART 102
             +VK  ++ G +VN    G  ++  TPL     ++      L+++ +L+E GADI+ + 
Sbjct: 51  TDIVKLFINLGANVN----GLDNEYSTPLCTILSNIKDYKHMLDIVKILIENGADINKKN 106

Query: 103 KGACGWTPLHTAAKER---KKEAVRFLIENGA 131
               G TPL+           E + F+IENGA
Sbjct: 107 SD--GETPLYCLLSNGYINNLEILLFMIENGA 136

Length = 489

>gnl|CDD|165205 PHA02874, PHA02874, ankyrin repeat protein; Provisional

 Score = 39.6 bits (92), Expect = 7e-04
 Identities = 28/104 (26%), Positives = 54/104 (51%), Gaps = 13/104 (12%)

Query: 46  GDIKLVKQLL-DEGMDVNVAAWGPKSKGVTPLHLAAQGGHLEVMDVLLERGADID-ARTK 103
           GDI+ +++++ ++G  +N++      +  TPL  A + G  +++++ ++ GADI+   TK
Sbjct: 12  GDIEAIEKIIKNKGNCINISV----DETTTPLIDAIRSGDAKIVELFIKHGADINHINTK 67

Query: 104 GACGWTPLHTAAKERKKEAVRFLIENG---AFLP-DDINDSRFN 143
                 PL TA K    + ++ LI+NG   + LP   I      
Sbjct: 68  IP---HPLLTAIKIGAHDIIKLLIDNGVDTSILPIPCIEKDMIK 108

Length = 434

>gnl|CDD|206028 pfam13857, Ank_5, Ankyrin repeats (many copies)

 Score = 36.2 bits (84), Expect = 7e-04
 Identities = 18/41 (43%), Positives = 22/41 (53%), Gaps = 1/41 (2%)

Query: 91  LLERGADIDARTKGACGWTPLHTAAKERKKEAVRFLIENGA 131
           LLE G  ID       G TPLH AAK    E V++L++ G 
Sbjct: 1   LLEHG-PIDLNATDGNGNTPLHLAAKYGALELVQWLLKPGV 40

Length = 56

>gnl|CDD|206028 pfam13857, Ank_5, Ankyrin repeats (many copies)

 Score = 36.2 bits (84), Expect = 7e-04
 Identities = 22/58 (37%), Positives = 33/58 (56%), Gaps = 4/58 (6%)

Query: 22 KRFFRSVIDTDDRGWTPLHIGARKGDIKLVKQLLDEGMDVNVAAWGPKSKGVTPLHLA 79
          +     +  TD  G TPLH+ A+ G ++LV+ LL  G+D+N+      S G+T L LA
Sbjct: 3  EHGPIDLNATDGNGNTPLHLAAKYGALELVQWLLKPGVDLNL----RDSDGLTALDLA 56

Length = 56

>gnl|CDD|215625 PLN03192, PLN03192, Voltage-dependent potassium channel; Provisional

 Score = 39.9 bits (93), Expect = 7e-04
 Identities = 20/59 (33%), Positives = 34/59 (57%), Gaps = 4/59 (6%)

Query: 43  ARKGDIKLVKQLLDEGMDVNVAAWGPKSKGVTPLHLAAQGGHLEVMDVLLERGADIDAR 101
           A  G+  L+++LL   +D ++      SKG TPLH+AA  G+ + + VLL+   ++  R
Sbjct: 533 ASTGNAALLEELLKAKLDPDIG----DSKGRTPLHIAASKGYEDCVLVLLKHACNVHIR 587

Length = 823

>gnl|CDD|165207 PHA02876, PHA02876, ankyrin repeat protein; Provisional

 Score = 39.3 bits (91), Expect = 0.001
 Identities = 21/86 (24%), Positives = 46/86 (53%), Gaps = 6/86 (6%)

Query: 44  RKGDIKLVKQLLDEGMDVNVAAWGPKSKGVTPLHLAAQGGHLEVMDVLLERGADIDARTK 103
           ++ ++ + + LL+ G DVN          +TP+H AA+ G+ +++++LL  GAD++    
Sbjct: 154 QQDELLIAEMLLEGGADVN----AKDIYCITPIHYAAERGNAKMVNLLLSYGADVNIIAL 209

Query: 104 GACGWTPLHTAAKERKKEAVRFLIEN 129
                + L  A   +  + ++ +I+N
Sbjct: 210 D--DLSVLECAVDSKNIDTIKAIIDN 233

Length = 682

>gnl|CDD|197603 smart00248, ANK, ankyrin repeats

 Score = 34.9 bits (81), Expect = 0.001
 Identities = 15/33 (45%), Positives = 19/33 (57%), Gaps = 4/33 (12%)

Query: 107 GWTPLHTAAKERKKEAVRFLIENGAFLPDDIND 139
           G TPLH AA+    E V+ L++ GA    DIN 
Sbjct: 2   GRTPLHLAAENGNLEVVKLLLDKGA----DINA 30

Ankyrin repeats are about 33 amino acids long and occur in at least four consecutive copies. They are involved in protein-protein interactions. The core of the repeat seems to be an helix-loop-helix structure. Length = 30

>gnl|CDD|165195 PHA02859, PHA02859, ankyrin repeat protein; Provisional

 Score = 38.3 bits (89), Expect = 0.001
 Identities = 29/120 (24%), Positives = 53/120 (44%), Gaps = 25/120 (20%)

Query: 38  PLHIGARKGDIKLVKQ---LLDEGMDVNVAAWGPKSKGVTPLH--LAAQGGHLEVMDVLL 92
           PL     K DI+ VK+    +++  D+            TP+   L     ++E++  L+
Sbjct: 24  PLFYYVEKDDIEGVKKWIKFVNDCNDLYE----------TPIFSCLEKDKVNVEILKFLI 73

Query: 93  ERGADIDARTKGACGWTPLH---TAAKERKKEAVRFLIENGAFLPDDIN--DSRFNPPLH 147
           E GAD++ +T+     + LH   +  K  + E ++ LI++G+     I   D      LH
Sbjct: 74  ENGADVNFKTRDN-NLSALHHYLSFNKNVEPEILKILIDSGS----SITEEDEDGKNLLH 128

Length = 209

>gnl|CDD|222939 PHA02878, PHA02878, ankyrin repeat protein; Provisional

 Score = 37.2 bits (86), Expect = 0.004
 Identities = 18/53 (33%), Positives = 28/53 (52%), Gaps = 2/53 (3%)

Query: 75  PLHLAAQGGHLEVMDVLLERGADIDARTKGACGWTPLHTAAKERKKEAVRFLI 127
           PLH A +  +L+V+  LL RG +++         TPLH   KE  K  ++ +I
Sbjct: 40  PLHQAVEARNLDVVKSLLTRGHNVN--QPDHRDLTPLHIICKEPNKLGMKEMI 90

Length = 477

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	210
KOG4412	226	consensus 26S proteasome regulatory complex, subun	99.95
KOG4412	226	consensus 26S proteasome regulatory complex, subun	99.94
KOG0509	600	consensus Ankyrin repeat and DHHC-type Zn-finger d	99.93
PHA02791	284	ankyrin-like protein; Provisional	99.91
PHA02791	284	ankyrin-like protein; Provisional	99.9
PHA02741	169	hypothetical protein; Provisional	99.9
PHA02859	209	ankyrin repeat protein; Provisional	99.89
PHA02875	413	ankyrin repeat protein; Provisional	99.89
PHA02875	413	ankyrin repeat protein; Provisional	99.88
PHA02878	477	ankyrin repeat protein; Provisional	99.87
PHA02743	166	Viral ankyrin protein; Provisional	99.87
PHA02874	434	ankyrin repeat protein; Provisional	99.87
PHA02878	477	ankyrin repeat protein; Provisional	99.87
KOG0509	600	consensus Ankyrin repeat and DHHC-type Zn-finger d	99.87
KOG0512	228	consensus Fetal globin-inducing factor (contains a	99.87
KOG0508	615	consensus Ankyrin repeat protein [General function	99.87
KOG0502	296	consensus Integral membrane ankyrin-repeat protein	99.87
PHA03095	471	ankyrin-like protein; Provisional	99.86
PHA02874	434	ankyrin repeat protein; Provisional	99.86
PHA03100	480	ankyrin repeat protein; Provisional	99.86
PHA02859	209	ankyrin repeat protein; Provisional	99.86
PHA02946	446	ankyin-like protein; Provisional	99.86
PHA02884	300	ankyrin repeat protein; Provisional	99.86
PHA03100	480	ankyrin repeat protein; Provisional	99.86
PHA02798	489	ankyrin-like protein; Provisional	99.85
PHA02736	154	Viral ankyrin protein; Provisional	99.85
PHA02716	764	CPXV016; CPX019; EVM010; Provisional	99.85
PHA02989	494	ankyrin repeat protein; Provisional	99.85
PHA02716	764	CPXV016; CPX019; EVM010; Provisional	99.85
PHA02946	446	ankyin-like protein; Provisional	99.84
PLN03192	823	Voltage-dependent potassium channel; Provisional	99.84
KOG0195	448	consensus Integrin-linked kinase [Signal transduct	99.83
PHA02743	166	Viral ankyrin protein; Provisional	99.83
PHA03095	471	ankyrin-like protein; Provisional	99.83
KOG0508	615	consensus Ankyrin repeat protein [General function	99.83
PHA02798	489	ankyrin-like protein; Provisional	99.82
KOG0514	452	consensus Ankyrin repeat protein [General function	99.82
PHA02989	494	ankyrin repeat protein; Provisional	99.82
PF12796	89	Ank_2: Ankyrin repeats (3 copies); InterPro: IPR02	99.82
PHA02795	437	ankyrin-like protein; Provisional	99.81
PHA02917	661	ankyrin-like protein; Provisional	99.81
PHA02876	682	ankyrin repeat protein; Provisional	99.81
KOG0510	929	consensus Ankyrin repeat protein [General function	99.8
PHA02730	672	ankyrin-like protein; Provisional	99.8
KOG4177	1143	consensus Ankyrin [Cell wall/membrane/envelope bio	99.8
KOG0512	228	consensus Fetal globin-inducing factor (contains a	99.79
PHA02876	682	ankyrin repeat protein; Provisional	99.79
cd00204	126	ANK ankyrin repeats; ankyrin repeats mediate prote	99.79
PHA02736	154	Viral ankyrin protein; Provisional	99.78
KOG0510	929	consensus Ankyrin repeat protein [General function	99.78
PHA02730	672	ankyrin-like protein; Provisional	99.77
PHA02741	169	hypothetical protein; Provisional	99.77
PHA02917	661	ankyrin-like protein; Provisional	99.77
KOG0514	452	consensus Ankyrin repeat protein [General function	99.76
PHA02795	437	ankyrin-like protein; Provisional	99.76
PLN03192	823	Voltage-dependent potassium channel; Provisional	99.75
KOG4214	117	consensus Myotrophin and similar proteins [Transcr	99.74
PHA02884	300	ankyrin repeat protein; Provisional	99.73
KOG0505	527	consensus Myosin phosphatase, regulatory subunit [	99.73
KOG4177	1143	consensus Ankyrin [Cell wall/membrane/envelope bio	99.72
KOG0502	296	consensus Integral membrane ankyrin-repeat protein	99.72
PHA02792	631	ankyrin-like protein; Provisional	99.72
PHA02792	631	ankyrin-like protein; Provisional	99.72
TIGR00870	743	trp transient-receptor-potential calcium channel p	99.7
TIGR00870	743	trp transient-receptor-potential calcium channel p	99.69
KOG3676	782	consensus Ca2+-permeable cation channel OSM-9 and	99.69
COG0666	235	Arp FOG: Ankyrin repeat [General function predicti	99.68
KOG0507	854	consensus CASK-interacting adaptor protein (caskin	99.67
KOG0515	752	consensus p53-interacting protein 53BP/ASPP, conta	99.67
KOG0195	448	consensus Integrin-linked kinase [Signal transduct	99.65
PTZ00322	664	6-phosphofructo-2-kinase/fructose-2,6-biphosphatas	99.63
KOG0505	527	consensus Myosin phosphatase, regulatory subunit [	99.63
PF12796	89	Ank_2: Ankyrin repeats (3 copies); InterPro: IPR02	99.62
PF13637	54	Ank_4: Ankyrin repeats (many copies); PDB: 3B95_A	99.57
PF13637	54	Ank_4: Ankyrin repeats (many copies); PDB: 3B95_A	99.55
KOG1710	396	consensus MYND Zn-finger and ankyrin repeat protei	99.54
PF13857	56	Ank_5: Ankyrin repeats (many copies); PDB: 1SW6_A	99.52
KOG4214	117	consensus Myotrophin and similar proteins [Transcr	99.52
KOG0507	854	consensus CASK-interacting adaptor protein (caskin	99.51
PF13857	56	Ank_5: Ankyrin repeats (many copies); PDB: 1SW6_A	99.51
cd00204	126	ANK ankyrin repeats; ankyrin repeats mediate prote	99.49
KOG1710	396	consensus MYND Zn-finger and ankyrin repeat protei	99.49
KOG3676	782	consensus Ca2+-permeable cation channel OSM-9 and	99.48
COG0666	235	Arp FOG: Ankyrin repeat [General function predicti	99.45
KOG0515	752	consensus p53-interacting protein 53BP/ASPP, conta	99.36
KOG4369	2131	consensus RTK signaling protein MASK/UNC-44 [Signa	99.33
PTZ00322	664	6-phosphofructo-2-kinase/fructose-2,6-biphosphatas	99.3
KOG0818	669	consensus GTPase-activating proteins of the GIT fa	99.2
KOG4369	2131	consensus RTK signaling protein MASK/UNC-44 [Signa	99.14
KOG0506	622	consensus Glutaminase (contains ankyrin repeat) [A	99.07
KOG0783	1267	consensus Uncharacterized conserved protein, conta	99.04
KOG0705	749	consensus GTPase-activating protein Centaurin gamm	99.03
KOG0783	1267	consensus Uncharacterized conserved protein, conta	99.0
PF13606	30	Ank_3: Ankyrin repeat	98.93
PF13606	30	Ank_3: Ankyrin repeat	98.86
KOG0782	1004	consensus Predicted diacylglycerol kinase [Signal	98.82
PF00023	33	Ank: Ankyrin repeat Hereditary spherocytosis; Inte	98.78
PF00023	33	Ank: Ankyrin repeat Hereditary spherocytosis; Inte	98.77
KOG0818	669	consensus GTPase-activating proteins of the GIT fa	98.75
KOG0506	622	consensus Glutaminase (contains ankyrin repeat) [A	98.7
KOG0522	560	consensus Ankyrin repeat protein [General function	98.65
KOG0782	1004	consensus Predicted diacylglycerol kinase [Signal	98.6
KOG3609	822	consensus Receptor-activated Ca2+-permeable cation	98.58
KOG0522	560	consensus Ankyrin repeat protein [General function	98.51
KOG0511	516	consensus Ankyrin repeat protein [General function	98.47
KOG2384	223	consensus Major histocompatibility complex protein	98.47
KOG0521	785	consensus Putative GTPase activating proteins (GAP	98.43
KOG0511	516	consensus Ankyrin repeat protein [General function	98.39
KOG0705	749	consensus GTPase-activating protein Centaurin gamm	98.35
KOG0521	785	consensus Putative GTPase activating proteins (GAP	98.2
KOG2384	223	consensus Major histocompatibility complex protein	98.2
KOG0520	975	consensus Uncharacterized conserved protein, conta	98.11
KOG3609	822	consensus Receptor-activated Ca2+-permeable cation	97.45
KOG0520	975	consensus Uncharacterized conserved protein, conta	97.39
smart00248	30	ANK ankyrin repeats. Ankyrin repeats are about 33	97.35
KOG2505	591	consensus Ankyrin repeat protein [General function	97.34
smart00248	30	ANK ankyrin repeats. Ankyrin repeats are about 33	97.14
KOG2505	591	consensus Ankyrin repeat protein [General function	96.95
PF06128	284	Shigella_OspC: Shigella flexneri OspC protein; Int	94.68
PF11929	76	DUF3447: Domain of unknown function (DUF3447); Int	92.6
PF06128	284	Shigella_OspC: Shigella flexneri OspC protein; Int	91.36
PF11929	76	DUF3447: Domain of unknown function (DUF3447); Int	91.19
PF03158	192	DUF249: Multigene family 530 protein; InterPro: IP	89.86
PF03158	192	DUF249: Multigene family 530 protein; InterPro: IP	80.15

>KOG4412 consensus 26S proteasome regulatory complex, subunit PSMD10 [Posttranslational modification, protein turnover, chaperones]

Probab=99.95  E-value=4.2e-28  Score=170.65  Aligned_cols=131  Identities=36%  Similarity=0.529  Sum_probs=85.8

Q ss_pred             hhcccCC-CCChHHHHHHHcCCHHHHHHHHH-CCCCccccccCCCCCCCcHHHHHHHCCcHHHHHHHHHc-CCCCCcccC
Q 028370           27 SVIDTDD-RGWTPLHIGARKGDIKLVKQLLD-EGMDVNVAAWGPKSKGVTPLHLAAQGGHLEVMDVLLER-GADIDARTK  103 (210)
Q Consensus        27 ~~~~~d~-~g~t~L~~A~~~g~~~~v~~Ll~-~g~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~-g~~~~~~~~  103 (210)
                      +++.++. +|+|||||||..|+.+++.+|++ .+..++-+    |..||||||+|+..|+.++|+.|+.+ |++++..+.
T Consensus        29 SL~~r~dqD~Rt~LHwa~S~g~~eiv~fLlsq~nv~~ddk----DdaGWtPlhia~s~g~~evVk~Ll~r~~advna~tn  104 (226)
T KOG4412|consen   29 SLNARDDQDGRTPLHWACSFGHVEIVYFLLSQPNVKPDDK----DDAGWTPLHIAASNGNDEVVKELLNRSGADVNATTN  104 (226)
T ss_pred             hhhccccccCCceeeeeeecCchhHHHHHHhcCCCCCCCc----cccCCchhhhhhhcCcHHHHHHHhcCCCCCcceecC
Confidence            4444444 67777777777777777777773 34444444    66677777777777777777777766 677766666


Q ss_pred             CCCCChHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCCCCCcccccccchHHHHHHHHHhhhhh
Q 028370          104 GACGWTPLHTAAKERKKEAVRFLIENGAFLPDDINDSRFNPPLHYCPSLEWAYEEMMRFQRESF  167 (210)
Q Consensus       104 ~~~g~tpL~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~~~l~~~~  167 (210)
                      .  |.||||||+..|+++|+++|+++|+.+  +++|..|+||||-|+..+.  .+++++|....
T Consensus       105 ~--G~T~LHyAagK~r~eIaqlLle~ga~i--~~kD~~~qtplHRAAavGk--lkvie~Li~~~  162 (226)
T KOG4412|consen  105 G--GQTCLHYAAGKGRLEIAQLLLEKGALI--RIKDKQGQTPLHRAAAVGK--LKVIEYLISQG  162 (226)
T ss_pred             C--CcceehhhhcCChhhHHHHHHhcCCCC--cccccccCchhHHHHhccc--hhhHHHHHhcC
Confidence            5  677777777777777777777777644  6677777777776664433  56666665554

>KOG4412 consensus 26S proteasome regulatory complex, subunit PSMD10 [Posttranslational modification, protein turnover, chaperones]

Probab=99.94  E-value=5.6e-27  Score=165.00  Aligned_cols=130  Identities=41%  Similarity=0.570  Sum_probs=116.1

Q ss_pred             hcccCCCCChHHHHHHHcCCHHHHHHHHHC-CCCccccccCCCCCCCcHHHHHHHCCcHHHHHHHHHcCCCCCcccCCCC
Q 028370           28 VIDTDDRGWTPLHIGARKGDIKLVKQLLDE-GMDVNVAAWGPKSKGVTPLHLAAQGGHLEVMDVLLERGADIDARTKGAC  106 (210)
Q Consensus        28 ~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~-g~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~~  106 (210)
                      ++.+|..|+||||.|+..|+.++|+.|+.+ |++++..    +..|.|+||+|+..|..+++++|++.|+.++.+|..  
T Consensus        65 ~ddkDdaGWtPlhia~s~g~~evVk~Ll~r~~advna~----tn~G~T~LHyAagK~r~eIaqlLle~ga~i~~kD~~--  138 (226)
T KOG4412|consen   65 PDDKDDAGWTPLHIAASNGNDEVVKELLNRSGADVNAT----TNGGQTCLHYAAGKGRLEIAQLLLEKGALIRIKDKQ--  138 (226)
T ss_pred             CCCccccCCchhhhhhhcCcHHHHHHHhcCCCCCccee----cCCCcceehhhhcCChhhHHHHHHhcCCCCcccccc--
Confidence            567899999999999999999999999988 9999998    899999999999999999999999999999988877  


Q ss_pred             CChHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCCCCCcccccccchHHHHHHHHHhhhhh
Q 028370          107 GWTPLHTAAKERKKEAVRFLIENGAFLPDDINDSRFNPPLHYCPSLEWAYEEMMRFQRESF  167 (210)
Q Consensus       107 g~tpL~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~~~l~~~~  167 (210)
                      |.||||.|+.-|.++++++|+..|+.+  +..|..|+||||+|..-+  ..+...+|.+..
T Consensus       139 ~qtplHRAAavGklkvie~Li~~~a~~--n~qDk~G~TpL~~al~e~--~~d~a~lLV~~g  195 (226)
T KOG4412|consen  139 GQTPLHRAAAVGKLKVIEYLISQGAPL--NTQDKYGFTPLHHALAEG--HPDVAVLLVRAG  195 (226)
T ss_pred             cCchhHHHHhccchhhHHHHHhcCCCC--CcccccCccHHHHHHhcc--CchHHHHHHHhc
Confidence            999999999999999999999999955  999999999999995333  344544454443

>KOG0509 consensus Ankyrin repeat and DHHC-type Zn-finger domain containing proteins [General function prediction only]

Probab=99.93  E-value=1.8e-25  Score=183.35  Aligned_cols=170  Identities=29%  Similarity=0.385  Sum_probs=137.0

Q ss_pred             hhccchhHHHHHHhhHHHhhhhcccCCCCChHHHHHHHcCCHHHHHHHHHCCCCccccccCCCCCCCcHHHHHHHCCcHH
Q 028370            7 HEQLGPFTLQRKASRKRFFRSVIDTDDRGWTPLHIGARKGDIKLVKQLLDEGMDVNVAAWGPKSKGVTPLHLAAQGGHLE   86 (210)
Q Consensus         7 ~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~g~t~L~~A~~~~~~~   86 (210)
                      ..++|.+..++..-... ..+.+++|.+|.|+||||+.+++++++++|+++|+++|...   ...+.||||||+++|+..
T Consensus        51 A~q~G~l~~v~~lve~~-g~~v~~~D~~g~tlLHWAAiNNrl~v~r~li~~gadvn~~g---G~l~stPLHWAar~G~~~  126 (600)
T KOG0509|consen   51 ATQYGELETVKELVESE-GESVNNPDREGVTLLHWAAINNRLDVARYLISHGADVNAIG---GVLGSTPLHWAARNGHIS  126 (600)
T ss_pred             HhhcchHHHHHHHHhhc-CcCCCCCCcCCccceeHHHHcCcHHHHHHHHHcCCCccccC---CCCCCCcchHHHHcCcHH
Confidence            34567777666555444 88899999999999999999999999999999999999873   367899999999999999


Q ss_pred             HHHHHHHcCCCCCcccCCCCCChHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCCCCCcccccccchHHHHHHHHHhhhh
Q 028370           87 VMDVLLERGADIDARTKGACGWTPLHTAAKERKKEAVRFLIENGAFLPDDINDSRFNPPLHYCPSLEWAYEEMMRFQRES  166 (210)
Q Consensus        87 ~v~~Ll~~g~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~~~l~~~  166 (210)
                      +|.+|+++|+++++.|..  |.+|+|.|++.|+.-.|-+|+.+|+++  +.+|.+|.|||+||+..+....  +.+|...
T Consensus       127 vv~lLlqhGAdpt~~D~~--G~~~lHla~~~~~~~~vayll~~~~d~--d~~D~~grTpLmwAaykg~~~~--v~~LL~f  200 (600)
T KOG0509|consen  127 VVDLLLQHGADPTLKDKQ--GLTPLHLAAQFGHTALVAYLLSKGADI--DLRDNNGRTPLMWAAYKGFALF--VRRLLKF  200 (600)
T ss_pred             HHHHHHHcCCCCceecCC--CCcHHHHHHHhCchHHHHHHHHhcccC--CCcCCCCCCHHHHHHHhcccHH--HHHHHHh
Confidence            999999999999999888  999999999999999999999999855  9999999999999996665432  3333333


Q ss_pred             hhcCCCCccHHHHHHHhHHH
Q 028370          167 FSAGETSYSSEKLNALSRLL  186 (210)
Q Consensus       167 ~~~~~~~~~~~~~~~~~~~~  186 (210)
                      ...........+.+++.++.
T Consensus       201 ~a~~~~~d~~~g~TpLHwa~  220 (600)
T KOG0509|consen  201 GASLLLTDDNHGNTPLHWAV  220 (600)
T ss_pred             cccccccccccCCchHHHHH
Confidence            22222222234445555443

>PHA02791 ankyrin-like protein; Provisional

Probab=99.91  E-value=3.1e-23  Score=161.91  Aligned_cols=125  Identities=20%  Similarity=0.221  Sum_probs=83.9

Q ss_pred             ccCCCCChHHHHHHHcCCHHHHHHHHHCCCCccccccCCCCCCCcHHHHHHHCCcHHHHHHHHHcCCCCCcccCCCCCCh
Q 028370           30 DTDDRGWTPLHIGARKGDIKLVKQLLDEGMDVNVAAWGPKSKGVTPLHLAAQGGHLEVMDVLLERGADIDARTKGACGWT  109 (210)
Q Consensus        30 ~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~~g~t  109 (210)
                      .+|..|.||||+|+..|+.++++.|++.|++++..    +  +.||||+|+..|+.+++++|++.|++++.++..  |.|
T Consensus        25 ~~D~~G~TpLh~Aa~~g~~eiv~~Ll~~ga~~n~~----d--~~TpLh~Aa~~g~~eiV~lLL~~Gadvn~~d~~--G~T   96 (284)
T PHA02791         25 KADVHGHSALYYAIADNNVRLVCTLLNAGALKNLL----E--NEFPLHQAATLEDTKIVKILLFSGMDDSQFDDK--GNT   96 (284)
T ss_pred             CCCCCCCcHHHHHHHcCCHHHHHHHHHCcCCCcCC----C--CCCHHHHHHHCCCHHHHHHHHHCCCCCCCCCCC--CCC
Confidence            46677777777777777777777777777666543    2  467777777777777777777777777766655  777


Q ss_pred             HHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCCC-CCcccccccchHHHHHHHHHhhhh
Q 028370          110 PLHTAAKERKKEAVRFLIENGAFLPDDINDSRF-NPPLHYCPSLEWAYEEMMRFQRES  166 (210)
Q Consensus       110 pL~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~g-~t~l~~a~~~~~~~~~~~~~l~~~  166 (210)
                      |||+|+..|+.+++++|+++|+++  +.++..| .||||+|+..  +..+++++|.+.
T Consensus        97 pLh~Aa~~g~~eivk~Ll~~gadi--n~~~~~g~~TpL~~Aa~~--g~~eivk~LL~~  150 (284)
T PHA02791         97 ALYYAVDSGNMQTVKLFVKKNWRL--MFYGKTGWKTSFYHAVML--NDVSIVSYFLSE  150 (284)
T ss_pred             HHHHHHHcCCHHHHHHHHHCCCCc--CccCCCCCcHHHHHHHHc--CCHHHHHHHHhc
Confidence            777777777777777777777754  4555555 4677777633  335666666554

>PHA02791 ankyrin-like protein; Provisional

Probab=99.90  E-value=9e-23  Score=159.33  Aligned_cols=130  Identities=16%  Similarity=0.131  Sum_probs=86.6

Q ss_pred             hhcccCCCCChHHHHHHHcCCHHHHHHHHHCCCCccccccCCCCCC-CcHHHHHHHCCcHHHHHHHHHcCCCCCcccCCC
Q 028370           27 SVIDTDDRGWTPLHIGARKGDIKLVKQLLDEGMDVNVAAWGPKSKG-VTPLHLAAQGGHLEVMDVLLERGADIDARTKGA  105 (210)
Q Consensus        27 ~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~g-~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~  105 (210)
                      +++.+|..|+||||+|+..|+.+++++|+++|++++..    +..| .||||+|+..|+.+++++|++.+++..  +. .
T Consensus        86 dvn~~d~~G~TpLh~Aa~~g~~eivk~Ll~~gadin~~----~~~g~~TpL~~Aa~~g~~eivk~LL~~~~~~~--d~-~  158 (284)
T PHA02791         86 DDSQFDDKGNTALYYAVDSGNMQTVKLFVKKNWRLMFY----GKTGWKTSFYHAVMLNDVSIVSYFLSEIPSTF--DL-A  158 (284)
T ss_pred             CCCCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCcCcc----CCCCCcHHHHHHHHcCCHHHHHHHHhcCCccc--cc-c
Confidence            34556677777777777777777777777777776655    5555 367777777777777777777654321  11 1


Q ss_pred             CCChHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCCCCCc-ccccccchHHHHHHHHHhhhhh
Q 028370          106 CGWTPLHTAAKERKKEAVRFLIENGAFLPDDINDSRFNPP-LHYCPSLEWAYEEMMRFQRESF  167 (210)
Q Consensus       106 ~g~tpL~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~g~t~-l~~a~~~~~~~~~~~~~l~~~~  167 (210)
                      .|.||||+|+..|+.+++++|+++|+++  +.++..|.|| ||+|+..  +..+++++|....
T Consensus       159 ~g~TpLh~Aa~~g~~eiv~lLL~~gAd~--n~~d~~g~t~~L~~Aa~~--~~~e~v~lLl~~G  217 (284)
T PHA02791        159 ILLSCIHITIKNGHVDMMILLLDYMTST--NTNNSLLFIPDIKLAIDN--KDLEMLQALFKYD  217 (284)
T ss_pred             cCccHHHHHHHcCCHHHHHHHHHCCCCC--CcccCCCCChHHHHHHHc--CCHHHHHHHHHCC
Confidence            2667777777777777777777777754  6666777765 7777743  3467777776553

>PHA02741 hypothetical protein; Provisional

Probab=99.90  E-value=6.5e-23  Score=149.44  Aligned_cols=133  Identities=26%  Similarity=0.376  Sum_probs=114.6

Q ss_pred             hhcccCCCCChHHHHHHHcCCHHHHHHHHH------CCCCccccccCCCCCCCcHHHHHHHCCc----HHHHHHHHHcCC
Q 028370           27 SVIDTDDRGWTPLHIGARKGDIKLVKQLLD------EGMDVNVAAWGPKSKGVTPLHLAAQGGH----LEVMDVLLERGA   96 (210)
Q Consensus        27 ~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~------~g~~~~~~~~~~~~~g~t~L~~A~~~~~----~~~v~~Ll~~g~   96 (210)
                      .++.+|..|.||||+|++.|+.++++.|+.      .|++++..    |..|.||||+|+..|+    .+++++|++.|+
T Consensus        13 ~~~~~~~~g~t~Lh~Aa~~g~~~~v~~l~~~~~~~~~ga~in~~----d~~g~T~Lh~A~~~g~~~~~~~ii~~Ll~~ga   88 (169)
T PHA02741         13 MIAEKNSEGENFFHEAARCGCFDIIARFTPFIRGDCHAAALNAT----DDAGQMCIHIAAEKHEAQLAAEIIDHLIELGA   88 (169)
T ss_pred             HhhccccCCCCHHHHHHHcCCHHHHHHHHHHhccchhhhhhhcc----CCCCCcHHHHHHHcCChHHHHHHHHHHHHcCC
Confidence            456789999999999999999999999854      35777777    8899999999999998    588999999999


Q ss_pred             CCCcccC-CCCCChHHHHHHhcCCHHHHHHHHH-cCCCCCCCCCCCCCCCcccccccchHHHHHHHHHhhhhhhc
Q 028370           97 DIDARTK-GACGWTPLHTAAKERKKEAVRFLIE-NGAFLPDDINDSRFNPPLHYCPSLEWAYEEMMRFQRESFSA  169 (210)
Q Consensus        97 ~~~~~~~-~~~g~tpL~~A~~~g~~~~v~~Ll~-~g~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~~~l~~~~~~  169 (210)
                      +++.++. .  |.||||+|+..++.+++++|+. .|+++  +.+|..|.|||++|+..+  ..+++++|......
T Consensus        89 din~~~~~~--g~TpLh~A~~~~~~~iv~~Ll~~~g~~~--~~~n~~g~tpL~~A~~~~--~~~iv~~L~~~~~~  157 (169)
T PHA02741         89 DINAQEMLE--GDTALHLAAHRRDHDLAEWLCCQPGIDL--HFCNADNKSPFELAIDNE--DVAMMQILREIVAT  157 (169)
T ss_pred             CCCCCCcCC--CCCHHHHHHHcCCHHHHHHHHhCCCCCC--CcCCCCCCCHHHHHHHCC--CHHHHHHHHHHHHH
Confidence            9998864 5  9999999999999999999998 58855  889999999999999544  46888887766443

>PHA02859 ankyrin repeat protein; Provisional

Probab=99.89  E-value=4.4e-22  Score=149.73  Aligned_cols=134  Identities=21%  Similarity=0.257  Sum_probs=113.7

Q ss_pred             hhhcccCCCCChHHHHHHHcC--CHHHHHHHHHCCCCccccccCCC-CCCCcHHHHHHHC---CcHHHHHHHHHcCCCCC
Q 028370           26 RSVIDTDDRGWTPLHIGARKG--DIKLVKQLLDEGMDVNVAAWGPK-SKGVTPLHLAAQG---GHLEVMDVLLERGADID   99 (210)
Q Consensus        26 ~~~~~~d~~g~t~L~~A~~~g--~~~~v~~Ll~~g~~~~~~~~~~~-~~g~t~L~~A~~~---~~~~~v~~Ll~~g~~~~   99 (210)
                      ...+.+|..|.||||.|+.++  +.+++++|+++|++++..    + ..|.||||+|+..   ++.+++++|+++|++++
T Consensus        42 ~~~n~~~~~g~TpLh~a~~~~~~~~eiv~~Ll~~gadvn~~----~~~~g~TpLh~a~~~~~~~~~eiv~~Ll~~gadin  117 (209)
T PHA02859         42 KFVNDCNDLYETPIFSCLEKDKVNVEILKFLIENGADVNFK----TRDNNLSALHHYLSFNKNVEPEILKILIDSGSSIT  117 (209)
T ss_pred             HhhhccCccCCCHHHHHHHcCCCCHHHHHHHHHCCCCCCcc----CCCCCCCHHHHHHHhCccccHHHHHHHHHCCCCCC
Confidence            346778999999999999865  899999999999999987    5 5799999998763   47999999999999999


Q ss_pred             cccCCCCCChHHHHHHh--cCCHHHHHHHHHcCCCCCCCCCCCCCCCcccccccchHHHHHHHHHhhhhhh
Q 028370          100 ARTKGACGWTPLHTAAK--ERKKEAVRFLIENGAFLPDDINDSRFNPPLHYCPSLEWAYEEMMRFQRESFS  168 (210)
Q Consensus       100 ~~~~~~~g~tpL~~A~~--~g~~~~v~~Ll~~g~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~~~l~~~~~  168 (210)
                      ..+.+  |.||||+|+.  .++.+++++|++.|+++  +.+|..|.||||.++. ..+..+++++|.+...
T Consensus       118 ~~d~~--G~TpLh~a~~~~~~~~~iv~~Li~~gadi--n~~d~~g~t~Lh~~a~-~~~~~~iv~~Ll~~Ga  183 (209)
T PHA02859        118 EEDED--GKNLLHMYMCNFNVRINVIKLLIDSGVSF--LNKDFDNNNILYSYIL-FHSDKKIFDFLTSLGI  183 (209)
T ss_pred             CcCCC--CCCHHHHHHHhccCCHHHHHHHHHcCCCc--ccccCCCCcHHHHHHH-hcCCHHHHHHHHHcCC
Confidence            98877  9999999876  46899999999999966  8899999999996432 2235788888887643

>PHA02875 ankyrin repeat protein; Provisional

Probab=99.89  E-value=3.5e-22  Score=164.97  Aligned_cols=127  Identities=31%  Similarity=0.390  Sum_probs=87.2

Q ss_pred             CCChHHHHHHHcCCHHHHHHHHHCCCCccccccCCCCCCCcHHHHHHHCCcHHHHHHHHHcCCCCCcccCCCCCChHHHH
Q 028370           34 RGWTPLHIGARKGDIKLVKQLLDEGMDVNVAAWGPKSKGVTPLHLAAQGGHLEVMDVLLERGADIDARTKGACGWTPLHT  113 (210)
Q Consensus        34 ~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~~g~tpL~~  113 (210)
                      .+.||||.|+..|+.++++.|++.|+..+...   +..|.||||+|+..|+.+++++|++.|++++..+..  |.||||+
T Consensus        67 ~~~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~---~~~g~tpL~~A~~~~~~~iv~~Ll~~gad~~~~~~~--g~tpLh~  141 (413)
T PHA02875         67 DIESELHDAVEEGDVKAVEELLDLGKFADDVF---YKDGMTPLHLATILKKLDIMKLLIARGADPDIPNTD--KFSPLHL  141 (413)
T ss_pred             CcccHHHHHHHCCCHHHHHHHHHcCCcccccc---cCCCCCHHHHHHHhCCHHHHHHHHhCCCCCCCCCCC--CCCHHHH
Confidence            34444444444444444444444443332111   456788888888888888888888888888877766  8888888


Q ss_pred             HHhcCCHHHHHHHHHcCCCCCCCCCCCCCCCcccccccchHHHHHHHHHhhhhhhc
Q 028370          114 AAKERKKEAVRFLIENGAFLPDDINDSRFNPPLHYCPSLEWAYEEMMRFQRESFSA  169 (210)
Q Consensus       114 A~~~g~~~~v~~Ll~~g~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~~~l~~~~~~  169 (210)
                      |+..|+.+++++|+++|+++  +.+|..|.||||+|+..+  ..+++++|.+....
T Consensus       142 A~~~~~~~~v~~Ll~~g~~~--~~~d~~g~TpL~~A~~~g--~~eiv~~Ll~~ga~  193 (413)
T PHA02875        142 AVMMGDIKGIELLIDHKACL--DIEDCCGCTPLIIAMAKG--DIAICKMLLDSGAN  193 (413)
T ss_pred             HHHcCCHHHHHHHHhcCCCC--CCCCCCCCCHHHHHHHcC--CHHHHHHHHhCCCC
Confidence            88888888888888888855  777888888888888443  46777777765433

>PHA02875 ankyrin repeat protein; Provisional

Probab=99.88  E-value=5.3e-22  Score=163.93  Aligned_cols=128  Identities=23%  Similarity=0.361  Sum_probs=114.9

Q ss_pred             cCCCCChHHHHHHHcCCHHHHHHHHHCCCCccccccCCCCCCCcHHHHHHHCCcHHHHHHHHHcCCCCCcccCCCCCChH
Q 028370           31 TDDRGWTPLHIGARKGDIKLVKQLLDEGMDVNVAAWGPKSKGVTPLHLAAQGGHLEVMDVLLERGADIDARTKGACGWTP  110 (210)
Q Consensus        31 ~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~~g~tp  110 (210)
                      .+..|.||||+|+..|+.+++++|+++|++++..    +..|.||||+|+..|+.+++++|+++|++++..+..  |.||
T Consensus        98 ~~~~g~tpL~~A~~~~~~~iv~~Ll~~gad~~~~----~~~g~tpLh~A~~~~~~~~v~~Ll~~g~~~~~~d~~--g~Tp  171 (413)
T PHA02875         98 FYKDGMTPLHLATILKKLDIMKLLIARGADPDIP----NTDKFSPLHLAVMMGDIKGIELLIDHKACLDIEDCC--GCTP  171 (413)
T ss_pred             ccCCCCCHHHHHHHhCCHHHHHHHHhCCCCCCCC----CCCCCCHHHHHHHcCCHHHHHHHHhcCCCCCCCCCC--CCCH
Confidence            4567999999999999999999999999999988    899999999999999999999999999999988877  9999


Q ss_pred             HHHHHhcCCHHHHHHHHHcCCCCCCCCCCCCC-CCcccccccchHHHHHHHHHhhhhhh
Q 028370          111 LHTAAKERKKEAVRFLIENGAFLPDDINDSRF-NPPLHYCPSLEWAYEEMMRFQRESFS  168 (210)
Q Consensus       111 L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~g-~t~l~~a~~~~~~~~~~~~~l~~~~~  168 (210)
                      ||+|+..|+.+++++|+++|+++  +..+..| .||+++|+..  +..+++++|.+...
T Consensus       172 L~~A~~~g~~eiv~~Ll~~ga~~--n~~~~~~~~t~l~~A~~~--~~~~iv~~Ll~~ga  226 (413)
T PHA02875        172 LIIAMAKGDIAICKMLLDSGANI--DYFGKNGCVAALCYAIEN--NKIDIVRLFIKRGA  226 (413)
T ss_pred             HHHHHHcCCHHHHHHHHhCCCCC--CcCCCCCCchHHHHHHHc--CCHHHHHHHHHCCc
Confidence            99999999999999999999976  6666666 5889989854  45788888887643

>PHA02878 ankyrin repeat protein; Provisional

Probab=99.87  E-value=1.8e-21  Score=163.55  Aligned_cols=129  Identities=29%  Similarity=0.402  Sum_probs=85.4

Q ss_pred             hhhcccCCC-CChHHHHHHHcCCHHHHHHHHHCCCCccccccCCCCCCCcHHHHHHHCCcHHHHHHHHHcCCCCCcccCC
Q 028370           26 RSVIDTDDR-GWTPLHIGARKGDIKLVKQLLDEGMDVNVAAWGPKSKGVTPLHLAAQGGHLEVMDVLLERGADIDARTKG  104 (210)
Q Consensus        26 ~~~~~~d~~-g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~  104 (210)
                      .+++.+|.. |.||||+|+..|+.+++++|+++|++++..    +..|.||||.|+..++.+++++|++.|++++.++..
T Consensus       158 adin~~~~~~g~tpLh~A~~~~~~~iv~~Ll~~gad~n~~----d~~g~tpLh~A~~~~~~~iv~~Ll~~ga~in~~d~~  233 (477)
T PHA02878        158 ADINMKDRHKGNTALHYATENKDQRLTELLLSYGANVNIP----DKTNNSPLHHAVKHYNKPIVHILLENGASTDARDKC  233 (477)
T ss_pred             CCCCccCCCCCCCHHHHHHhCCCHHHHHHHHHCCCCCCCc----CCCCCCHHHHHHHhCCHHHHHHHHHcCCCCCCCCCC
Confidence            344556666 777777777777777777777777777666    666777777777777777777777777777766655


Q ss_pred             CCCChHHHHHHhc-CCHHHHHHHHHcCCCCCCCCCCC-CCCCcccccccchHHHHHHHHHhhhh
Q 028370          105 ACGWTPLHTAAKE-RKKEAVRFLIENGAFLPDDINDS-RFNPPLHYCPSLEWAYEEMMRFQRES  166 (210)
Q Consensus       105 ~~g~tpL~~A~~~-g~~~~v~~Ll~~g~~~~~~~~~~-~g~t~l~~a~~~~~~~~~~~~~l~~~  166 (210)
                        |.||||+|+.. ++.+++++|+++|+++  +.++. .|.||||+|+.    ..+++++|.+.
T Consensus       234 --g~TpLh~A~~~~~~~~iv~~Ll~~gadv--n~~~~~~g~TpLh~A~~----~~~~v~~Ll~~  289 (477)
T PHA02878        234 --GNTPLHISVGYCKDYDILKLLLEHGVDV--NAKSYILGLTALHSSIK----SERKLKLLLEY  289 (477)
T ss_pred             --CCCHHHHHHHhcCCHHHHHHHHHcCCCC--CccCCCCCCCHHHHHcc----CHHHHHHHHHC
Confidence              77777777654 5677777777777754  44443 56777777742    13555555554

>PHA02743 Viral ankyrin protein; Provisional

Probab=99.87  E-value=8.2e-22  Score=143.14  Aligned_cols=130  Identities=22%  Similarity=0.286  Sum_probs=110.3

Q ss_pred             hcccCCCCChHHHHHHHcCCH----HHHHHHHHCCCCccccccCCCCCCCcHHHHHHHCCcHH---HHHHHHHcCCCCCc
Q 028370           28 VIDTDDRGWTPLHIGARKGDI----KLVKQLLDEGMDVNVAAWGPKSKGVTPLHLAAQGGHLE---VMDVLLERGADIDA  100 (210)
Q Consensus        28 ~~~~d~~g~t~L~~A~~~g~~----~~v~~Ll~~g~~~~~~~~~~~~~g~t~L~~A~~~~~~~---~v~~Ll~~g~~~~~  100 (210)
                      .+..+.++.++||.||+.|+.    +++++|++.|++++..    |..|+||||+|+..|+.+   ++++|++.|++++.
T Consensus        13 ~~~~~~~~~~~l~~a~~~g~~~~l~~~~~~l~~~g~~~~~~----d~~g~t~Lh~Aa~~g~~~~~~~i~~Ll~~Gadin~   88 (166)
T PHA02743         13 AVEIDEDEQNTFLRICRTGNIYELMEVAPFISGDGHLLHRY----DHHGRQCTHMVAWYDRANAVMKIELLVNMGADINA   88 (166)
T ss_pred             HhhhccCCCcHHHHHHHcCCHHHHHHHHHHHhhcchhhhcc----CCCCCcHHHHHHHhCccCHHHHHHHHHHcCCCCCC
Confidence            455778889999999999998    5666777888888877    889999999999998865   47999999999998


Q ss_pred             cc-CCCCCChHHHHHHhcCCHHHHHHHHH-cCCCCCCCCCCCCCCCcccccccchHHHHHHHHHhhhhh
Q 028370          101 RT-KGACGWTPLHTAAKERKKEAVRFLIE-NGAFLPDDINDSRFNPPLHYCPSLEWAYEEMMRFQRESF  167 (210)
Q Consensus       101 ~~-~~~~g~tpL~~A~~~g~~~~v~~Ll~-~g~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~~~l~~~~  167 (210)
                      ++ ..  |.||||+|+..|+.+++++|++ .|+++  +.++..|.||||+|+..+  ..+++++|....
T Consensus        89 ~d~~~--g~TpLh~A~~~g~~~iv~~Ll~~~gad~--~~~d~~g~tpL~~A~~~~--~~~iv~~Ll~~g  151 (166)
T PHA02743         89 RELGT--GNTLLHIAASTKNYELAEWLCRQLGVNL--GAINYQHETAYHIAYKMR--DRRMMEILRANG  151 (166)
T ss_pred             CCCCC--CCcHHHHHHHhCCHHHHHHHHhccCCCc--cCcCCCCCCHHHHHHHcC--CHHHHHHHHHcC
Confidence            86 35  9999999999999999999995 79865  789999999999998544  467888887654

>PHA02874 ankyrin repeat protein; Provisional

Probab=99.87  E-value=1.8e-21  Score=161.66  Aligned_cols=120  Identities=29%  Similarity=0.457  Sum_probs=108.7

Q ss_pred             hhhcccCCCCChHHHHHHHcCCHHHHHHHHHCCCCccccccCCCCCCCcHHHHHHHCCcHHHHHHHHHcCCCCCcccCCC
Q 028370           26 RSVIDTDDRGWTPLHIGARKGDIKLVKQLLDEGMDVNVAAWGPKSKGVTPLHLAAQGGHLEVMDVLLERGADIDARTKGA  105 (210)
Q Consensus        26 ~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~  105 (210)
                      .+++.+|..|.||||+|+..|+.+++++|++.|++++..    +..|.||||+|+..++.+++++|++.|++++..+.. 
T Consensus       115 ~d~n~~~~~g~T~Lh~A~~~~~~~~v~~Ll~~gad~n~~----d~~g~tpLh~A~~~~~~~iv~~Ll~~g~~~n~~~~~-  189 (434)
T PHA02874        115 IDVNIKDAELKTFLHYAIKKGDLESIKMLFEYGADVNIE----DDNGCYPIHIAIKHNFFDIIKLLLEKGAYANVKDNN-  189 (434)
T ss_pred             CCCCCCCCCCccHHHHHHHCCCHHHHHHHHhCCCCCCCc----CCCCCCHHHHHHHCCcHHHHHHHHHCCCCCCCCCCC-
Confidence            345678899999999999999999999999999999988    899999999999999999999999999999988777 


Q ss_pred             CCChHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCCCCCcccccccch
Q 028370          106 CGWTPLHTAAKERKKEAVRFLIENGAFLPDDINDSRFNPPLHYCPSLE  153 (210)
Q Consensus       106 ~g~tpL~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~g~t~l~~a~~~~  153 (210)
                       |.||||+|+..|+.+++++|++.|+++  ..++..|.||||+|+..+
T Consensus       190 -g~tpL~~A~~~g~~~iv~~Ll~~g~~i--~~~~~~g~TpL~~A~~~~  234 (434)
T PHA02874        190 -GESPLHNAAEYGDYACIKLLIDHGNHI--MNKCKNGFTPLHNAIIHN  234 (434)
T ss_pred             -CCCHHHHHHHcCCHHHHHHHHhCCCCC--cCCCCCCCCHHHHHHHCC
Confidence             999999999999999999999999965  677778888888887543

>PHA02878 ankyrin repeat protein; Provisional

Probab=99.87  E-value=9.1e-22  Score=165.28  Aligned_cols=118  Identities=26%  Similarity=0.400  Sum_probs=107.3

Q ss_pred             hhhhcccCCCCChHHHHHHHcCCHHHHHHHHHCCCCccccccCCCCCCCcHHHHHHHC-CcHHHHHHHHHcCCCCCcccC
Q 028370           25 FRSVIDTDDRGWTPLHIGARKGDIKLVKQLLDEGMDVNVAAWGPKSKGVTPLHLAAQG-GHLEVMDVLLERGADIDARTK  103 (210)
Q Consensus        25 ~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~g~t~L~~A~~~-~~~~~v~~Ll~~g~~~~~~~~  103 (210)
                      ..+++.+|..|.||||.|++.|+.++++.|++.|++++..    |..|.||||+|+.. ++.+++++|++.|++++..+.
T Consensus       191 gad~n~~d~~g~tpLh~A~~~~~~~iv~~Ll~~ga~in~~----d~~g~TpLh~A~~~~~~~~iv~~Ll~~gadvn~~~~  266 (477)
T PHA02878        191 GANVNIPDKTNNSPLHHAVKHYNKPIVHILLENGASTDAR----DKCGNTPLHISVGYCKDYDILKLLLEHGVDVNAKSY  266 (477)
T ss_pred             CCCCCCcCCCCCCHHHHHHHhCCHHHHHHHHHcCCCCCCC----CCCCCCHHHHHHHhcCCHHHHHHHHHcCCCCCccCC
Confidence            3566778999999999999999999999999999999988    99999999999975 789999999999999998865


Q ss_pred             CCCCChHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCCCCCccccccc
Q 028370          104 GACGWTPLHTAAKERKKEAVRFLIENGAFLPDDINDSRFNPPLHYCPS  151 (210)
Q Consensus       104 ~~~g~tpL~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~g~t~l~~a~~  151 (210)
                      . .|.||||+|  .++.+++++|+++|+++  +..|..|.|||++|+.
T Consensus       267 ~-~g~TpLh~A--~~~~~~v~~Ll~~gadi--n~~d~~g~TpL~~A~~  309 (477)
T PHA02878        267 I-LGLTALHSS--IKSERKLKLLLEYGADI--NSLNSYKLTPLSSAVK  309 (477)
T ss_pred             C-CCCCHHHHH--ccCHHHHHHHHHCCCCC--CCcCCCCCCHHHHHHH
Confidence            2 299999999  57789999999999966  8999999999999985

>KOG0509 consensus Ankyrin repeat and DHHC-type Zn-finger domain containing proteins [General function prediction only]

Probab=99.87  E-value=4e-22  Score=163.82  Aligned_cols=132  Identities=39%  Similarity=0.478  Sum_probs=115.4

Q ss_pred             hhhhcccC-CCCChHHHHHHHcCCHHHHHHHHHCCCCccccccCCCCCCCcHHHHHHHCCcHHHHHHHHHcCCCCCcccC
Q 028370           25 FRSVIDTD-DRGWTPLHIGARKGDIKLVKQLLDEGMDVNVAAWGPKSKGVTPLHLAAQGGHLEVMDVLLERGADIDARTK  103 (210)
Q Consensus        25 ~~~~~~~d-~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~  103 (210)
                      ..++|... .-+.||||||+++|+..++..|+++|+|++..    |.+|.+|+|.|+..|+..+|-+|+.+|+++|.+|.
T Consensus       101 gadvn~~gG~l~stPLHWAar~G~~~vv~lLlqhGAdpt~~----D~~G~~~lHla~~~~~~~~vayll~~~~d~d~~D~  176 (600)
T KOG0509|consen  101 GADVNAIGGVLGSTPLHWAARNGHISVVDLLLQHGADPTLK----DKQGLTPLHLAAQFGHTALVAYLLSKGADIDLRDN  176 (600)
T ss_pred             CCCccccCCCCCCCcchHHHHcCcHHHHHHHHHcCCCCcee----cCCCCcHHHHHHHhCchHHHHHHHHhcccCCCcCC
Confidence            34566666 56889999999999999999999999999999    99999999999999999999999999999999998


Q ss_pred             CCCCChHHHHHHhcCCHHHHHHHHHcCCCCCCCCCC-CCCCCcccccccchHHHHHHHHHhhhh
Q 028370          104 GACGWTPLHTAAKERKKEAVRFLIENGAFLPDDIND-SRFNPPLHYCPSLEWAYEEMMRFQRES  166 (210)
Q Consensus       104 ~~~g~tpL~~A~~~g~~~~v~~Ll~~g~~~~~~~~~-~~g~t~l~~a~~~~~~~~~~~~~l~~~  166 (210)
                      +  |+|||++|+..|....++.|++.|+.+  ..+| .+|.||||||+..++  ...+.++.+.
T Consensus       177 ~--grTpLmwAaykg~~~~v~~LL~f~a~~--~~~d~~~g~TpLHwa~~~gN--~~~v~Ll~~g  234 (600)
T KOG0509|consen  177 N--GRTPLMWAAYKGFALFVRRLLKFGASL--LLTDDNHGNTPLHWAVVGGN--LTAVKLLLEG  234 (600)
T ss_pred             C--CCCHHHHHHHhcccHHHHHHHHhcccc--cccccccCCchHHHHHhcCC--cceEehhhhc
Confidence            8  999999999999988799999999966  5555 999999999985443  4444455444

>KOG0512 consensus Fetal globin-inducing factor (contains ankyrin repeats) [Transcription]

Probab=99.87  E-value=1.9e-21  Score=136.35  Aligned_cols=145  Identities=26%  Similarity=0.415  Sum_probs=113.6

Q ss_pred             chhHHHHHHhhHHHhhhhcccCCCCChHHHHHHHcCCHHHHHHHHHCCCCccccccCCCCCCCcHHHHHHHCCcHHHHHH
Q 028370           11 GPFTLQRKASRKRFFRSVIDTDDRGWTPLHIGARKGDIKLVKQLLDEGMDVNVAAWGPKSKGVTPLHLAAQGGHLEVMDV   90 (210)
Q Consensus        11 ~~~~~~~~~~~~~~~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~   90 (210)
                      +.+..+++.+++. ...++.+|.+|.||||.|+++|+.+++..|+..|++++.+    ...|+||||.||.-.+.+++.+
T Consensus        74 nrl~eV~~lL~e~-an~vNtrD~D~YTpLHRAaYn~h~div~~ll~~gAn~~a~----T~~GWTPLhSAckWnN~~va~~  148 (228)
T KOG0512|consen   74 NRLTEVQRLLSEK-ANHVNTRDEDEYTPLHRAAYNGHLDIVHELLLSGANKEAK----TNEGWTPLHSACKWNNFEVAGR  148 (228)
T ss_pred             ccHHHHHHHHHhc-cccccccccccccHHHHHHhcCchHHHHHHHHccCCcccc----cccCccchhhhhcccchhHHHH
Confidence            5566666666654 4567889999999999999999999999999999999888    7889999999999999999999


Q ss_pred             HHHcCCCCCcccCCCCCChHHHHHHhcCC-HHHHHHHHHcCCCCCCCCCCCCCCCcccccccchHHHHHHHHHhh
Q 028370           91 LLERGADIDARTKGACGWTPLHTAAKERK-KEAVRFLIENGAFLPDDINDSRFNPPLHYCPSLEWAYEEMMRFQR  164 (210)
Q Consensus        91 Ll~~g~~~~~~~~~~~g~tpL~~A~~~g~-~~~v~~Ll~~g~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~~~l~  164 (210)
                      |+++|+|+++.+..  ..||||.|+.+.+ ...+++|+.... +....++..+.||+.+|... .....+.+...
T Consensus       149 LLqhgaDVnA~t~g--~ltpLhlaa~~rn~r~t~~~Ll~dry-i~pg~~nn~eeta~~iARRT-~~s~~lfe~~e  219 (228)
T KOG0512|consen  149 LLQHGADVNAQTKG--LLTPLHLAAGNRNSRDTLELLLHDRY-IHPGLKNNLEETAFDIARRT-SMSHYLFEIVE  219 (228)
T ss_pred             HHhccCcccccccc--cchhhHHhhcccchHHHHHHHhhccc-cChhhhcCccchHHHHHHHh-hhhHHHHHHHH
Confidence            99999999988877  7799999988766 455677776655 45677888889999988632 22344444433

>KOG0508 consensus Ankyrin repeat protein [General function prediction only]

Probab=99.87  E-value=3.7e-22  Score=158.92  Aligned_cols=142  Identities=29%  Similarity=0.423  Sum_probs=124.5

Q ss_pred             chhHHHHHHhhHHHhhhhcccCCCCChHHHHHHHcCCHHHHHHHHHCCCCccccccCCCCCCCcHHHHHHHCCcHHHHHH
Q 028370           11 GPFTLQRKASRKRFFRSVIDTDDRGWTPLHIGARKGDIKLVKQLLDEGMDVNVAAWGPKSKGVTPLHLAAQGGHLEVMDV   90 (210)
Q Consensus        11 ~~~~~~~~~~~~~~~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~   90 (210)
                      |.+..++...++.  .+.|.......|||-.||.-|+++++++|+++|+|+++.    |+.|.|.||+||..|+.+|+++
T Consensus        95 GHl~vVk~L~~~g--a~VN~tT~TNStPLraACfDG~leivKyLvE~gad~~Ia----nrhGhTcLmIa~ykGh~~I~qy  168 (615)
T KOG0508|consen   95 GHLEVVKLLLRRG--ASVNDTTRTNSTPLRAACFDGHLEIVKYLVEHGADPEIA----NRHGHTCLMIACYKGHVDIAQY  168 (615)
T ss_pred             CcHHHHHHHHHhc--CccccccccCCccHHHHHhcchhHHHHHHHHcCCCCccc----ccCCCeeEEeeeccCchHHHHH
Confidence            5566666665555  667777778889999999999999999999999999999    9999999999999999999999


Q ss_pred             HHHcCCCCCcccCCCCCChHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCCCCCcccccccchHHHHHHHHHhhh
Q 028370           91 LLERGADIDARTKGACGWTPLHTAAKERKKEAVRFLIENGAFLPDDINDSRFNPPLHYCPSLEWAYEEMMRFQRE  165 (210)
Q Consensus        91 Ll~~g~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~~~l~~  165 (210)
                      |++.|+|++.++..  |+|+||.|+.+|+++++++|+.+|+.+   ..|..|.|||-.|+  ..+...++.+|..
T Consensus       169 Lle~gADvn~ks~k--GNTALH~caEsG~vdivq~Ll~~ga~i---~~d~~GmtPL~~Aa--~tG~~~iVe~L~~  236 (615)
T KOG0508|consen  169 LLEQGADVNAKSYK--GNTALHDCAESGSVDIVQLLLKHGAKI---DVDGHGMTPLLLAA--VTGHTDIVERLLQ  236 (615)
T ss_pred             HHHhCCCcchhccc--CchHHHhhhhcccHHHHHHHHhCCcee---eecCCCCchHHHHh--hhcchHHHHHHhc
Confidence            99999999999887  999999999999999999999999976   35667999999998  4455777777774

>KOG0502 consensus Integral membrane ankyrin-repeat protein Kidins220 (protein kinase D substrate) [General function prediction only]

Probab=99.87  E-value=6.5e-22  Score=143.63  Aligned_cols=122  Identities=29%  Similarity=0.398  Sum_probs=114.3

Q ss_pred             hhhcccCCCCChHHHHHHHcCCHHHHHHHHHCCCCccccccCCCCCCCcHHHHHHHCCcHHHHHHHHHcCCCCCcccCCC
Q 028370           26 RSVIDTDDRGWTPLHIGARKGDIKLVKQLLDEGMDVNVAAWGPKSKGVTPLHLAAQGGHLEVMDVLLERGADIDARTKGA  105 (210)
Q Consensus        26 ~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~  105 (210)
                      ..+|..|++|.|||.||++.|++++|++|++.|+++...    .....++|+.|++.|..++|++|+.++.++|..|.+ 
T Consensus       151 n~VN~~De~GfTpLiWAaa~G~i~vV~fLL~~GAdp~~l----gk~resALsLAt~ggytdiV~lLL~r~vdVNvyDwN-  225 (296)
T KOG0502|consen  151 NKVNACDEFGFTPLIWAAAKGHIPVVQFLLNSGADPDAL----GKYRESALSLATRGGYTDIVELLLTREVDVNVYDWN-  225 (296)
T ss_pred             ccccCccccCchHhHHHHhcCchHHHHHHHHcCCChhhh----hhhhhhhHhHHhcCChHHHHHHHHhcCCCcceeccC-
Confidence            456789999999999999999999999999999999988    788899999999999999999999999999999998 


Q ss_pred             CCChHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCCCCCcccccccchHH
Q 028370          106 CGWTPLHTAAKERKKEAVRFLIENGAFLPDDINDSRFNPPLHYCPSLEWA  155 (210)
Q Consensus       106 ~g~tpL~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~g~t~l~~a~~~~~~  155 (210)
                       |-|||-+|++.++.+||+.|++.|+++  +..+..|.++++.|+..+..
T Consensus       226 -GgTpLlyAvrgnhvkcve~Ll~sGAd~--t~e~dsGy~~mdlAValGyr  272 (296)
T KOG0502|consen  226 -GGTPLLYAVRGNHVKCVESLLNSGADV--TQEDDSGYWIMDLAVALGYR  272 (296)
T ss_pred             -CCceeeeeecCChHHHHHHHHhcCCCc--ccccccCCcHHHHHHHhhhH
Confidence             999999999999999999999999966  89999999999999966543

>PHA03095 ankyrin-like protein; Provisional

Probab=99.86  E-value=2.6e-21  Score=162.24  Aligned_cols=147  Identities=29%  Similarity=0.351  Sum_probs=122.5

Q ss_pred             chhHHHHHHhhHHHhhhhcccCCCCChHHHHHHHcC---CHHHHHHHHHCCCCccccccCCCCCCCcHHHHHHHCC-cHH
Q 028370           11 GPFTLQRKASRKRFFRSVIDTDDRGWTPLHIGARKG---DIKLVKQLLDEGMDVNVAAWGPKSKGVTPLHLAAQGG-HLE   86 (210)
Q Consensus        11 ~~~~~~~~~~~~~~~~~~~~~d~~g~t~L~~A~~~g---~~~~v~~Ll~~g~~~~~~~~~~~~~g~t~L~~A~~~~-~~~   86 (210)
                      +.+..+......  ..+++.++..|.||||+|+..+   +.++++.|++.|++++..    +..|.||||+|+..+ ..+
T Consensus        25 ~~~~~v~~Ll~~--ga~vn~~~~~g~t~Lh~a~~~~~~~~~~iv~~Ll~~Gadin~~----~~~g~TpLh~A~~~~~~~~   98 (471)
T PHA03095         25 VTVEEVRRLLAA--GADVNFRGEYGKTPLHLYLHYSSEKVKDIVRLLLEAGADVNAP----ERCGFTPLHLYLYNATTLD   98 (471)
T ss_pred             CCHHHHHHHHHc--CCCcccCCCCCCCHHHHHHHhcCCChHHHHHHHHHCCCCCCCC----CCCCCCHHHHHHHcCCcHH
Confidence            444444444432  4567888999999999999998   999999999999999988    889999999999999 599


Q ss_pred             HHHHHHHcCCCCCcccCCCCCChHHHHHH--hcCCHHHHHHHHHcCCCCCCCCCCCCCCCcccccccchHHHHHHHHHhh
Q 028370           87 VMDVLLERGADIDARTKGACGWTPLHTAA--KERKKEAVRFLIENGAFLPDDINDSRFNPPLHYCPSLEWAYEEMMRFQR  164 (210)
Q Consensus        87 ~v~~Ll~~g~~~~~~~~~~~g~tpL~~A~--~~g~~~~v~~Ll~~g~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~~~l~  164 (210)
                      ++++|++.|++++..+..  |.||||+|+  ..++.+++++|+++|+++  +..|..|.||||+|+.......++++++.
T Consensus        99 iv~lLl~~ga~in~~~~~--g~tpLh~a~~~~~~~~~iv~~Ll~~gad~--~~~d~~g~tpL~~a~~~~~~~~~iv~~Ll  174 (471)
T PHA03095         99 VIKLLIKAGADVNAKDKV--GRTPLHVYLSGFNINPKVIRLLLRKGADV--NALDLYGMTPLAVLLKSRNANVELLRLLI  174 (471)
T ss_pred             HHHHHHHcCCCCCCCCCC--CCCHHHHHhhCCcCCHHHHHHHHHcCCCC--CccCCCCCCHHHHHHHcCCCCHHHHHHHH
Confidence            999999999999988877  999999999  456789999999999965  88899999999988765555567788777


Q ss_pred             hhh
Q 028370          165 ESF  167 (210)
Q Consensus       165 ~~~  167 (210)
                      +..
T Consensus       175 ~~g  177 (471)
T PHA03095        175 DAG  177 (471)
T ss_pred             HcC
Confidence            663

>PHA02874 ankyrin repeat protein; Provisional

Probab=99.86  E-value=6.6e-21  Score=158.34  Aligned_cols=129  Identities=27%  Similarity=0.392  Sum_probs=68.5

Q ss_pred             hcccCCCCChHHHHHHHcCCHHHHHHHHHCCCCccccccCCCCCCCcHHHHHHHCCcHHHHHHHHHcCCC----------
Q 028370           28 VIDTDDRGWTPLHIGARKGDIKLVKQLLDEGMDVNVAAWGPKSKGVTPLHLAAQGGHLEVMDVLLERGAD----------   97 (210)
Q Consensus        28 ~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~----------   97 (210)
                      ++..+..|.||||.|++.|+.+++++|++.|++++..    +..|.||||.|+..|+.+++++|+++|++          
T Consensus        28 ~n~~~~~~~tpL~~A~~~g~~~iv~~Ll~~Ga~~n~~----~~~~~t~L~~A~~~~~~~iv~~Ll~~g~~~~~~~~~~~~  103 (434)
T PHA02874         28 INISVDETTTPLIDAIRSGDAKIVELFIKHGADINHI----NTKIPHPLLTAIKIGAHDIIKLLIDNGVDTSILPIPCIE  103 (434)
T ss_pred             CCCcCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCC----CCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCcchhccCC
Confidence            3445555666666666666666666666666666554    45555555555555555555555544432          


Q ss_pred             -------------CCcccCCCCCChHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCCCCCcccccccchHHHHHHHHHhh
Q 028370           98 -------------IDARTKGACGWTPLHTAAKERKKEAVRFLIENGAFLPDDINDSRFNPPLHYCPSLEWAYEEMMRFQR  164 (210)
Q Consensus        98 -------------~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~~~l~  164 (210)
                                   ++..+..  |.||||+|+..|+.+++++|+++|+++  +.++..|.||||+|+..  +..+++++|.
T Consensus       104 ~~~i~~ll~~g~d~n~~~~~--g~T~Lh~A~~~~~~~~v~~Ll~~gad~--n~~d~~g~tpLh~A~~~--~~~~iv~~Ll  177 (434)
T PHA02874        104 KDMIKTILDCGIDVNIKDAE--LKTFLHYAIKKGDLESIKMLFEYGADV--NIEDDNGCYPIHIAIKH--NFFDIIKLLL  177 (434)
T ss_pred             HHHHHHHHHCcCCCCCCCCC--CccHHHHHHHCCCHHHHHHHHhCCCCC--CCcCCCCCCHHHHHHHC--CcHHHHHHHH
Confidence                         2222222  555555555555555555555555533  44555555555555532  2244555554


Q ss_pred             hh
Q 028370          165 ES  166 (210)
Q Consensus       165 ~~  166 (210)
                      +.
T Consensus       178 ~~  179 (434)
T PHA02874        178 EK  179 (434)
T ss_pred             HC
Confidence            43

>PHA03100 ankyrin repeat protein; Provisional

Probab=99.86  E-value=2.2e-21  Score=163.05  Aligned_cols=127  Identities=35%  Similarity=0.540  Sum_probs=66.8

Q ss_pred             cccCCCCChHHHHHHHcCCHHHHHHHHHCCCCccccccCCCCCC------CcHHHHHHHCCc--HHHHHHHHHcCCCCCc
Q 028370           29 IDTDDRGWTPLHIGARKGDIKLVKQLLDEGMDVNVAAWGPKSKG------VTPLHLAAQGGH--LEVMDVLLERGADIDA  100 (210)
Q Consensus        29 ~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~g------~t~L~~A~~~~~--~~~v~~Ll~~g~~~~~  100 (210)
                      +.+|..|.||||+|+..|+.+++++|+++|++++..    +..|      .||||+|+..++  .+++++|++.|++++.
T Consensus       170 n~~d~~g~tpL~~A~~~~~~~iv~~Ll~~ga~~~~~----~~~~~~~~~~~t~l~~a~~~~~~~~~iv~~Ll~~g~din~  245 (480)
T PHA03100        170 NAKNRYGYTPLHIAVEKGNIDVIKFLLDNGADINAG----DIETLLFTIFETPLHIAACYNEITLEVVNYLLSYGVPINI  245 (480)
T ss_pred             ccccCCCCCHHHHHHHhCCHHHHHHHHHcCCCccCC----CCCCCcHHHHHhHHHHHHHhCcCcHHHHHHHHHcCCCCCC
Confidence            334444555555555555555555555555554444    3344      455555555555  5555555555555555


Q ss_pred             ccCCCCCChHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCCCCCcccccccchHHHHHHHHHhhh
Q 028370          101 RTKGACGWTPLHTAAKERKKEAVRFLIENGAFLPDDINDSRFNPPLHYCPSLEWAYEEMMRFQRE  165 (210)
Q Consensus       101 ~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~~~l~~  165 (210)
                      ++..  |.||||+|+..|+.+++++|+++|+++  +..+..|.||+++|+.  .+..++++++.+
T Consensus       246 ~d~~--g~TpL~~A~~~~~~~iv~~Ll~~gad~--n~~d~~g~tpl~~A~~--~~~~~iv~~Ll~  304 (480)
T PHA03100        246 KDVY--GFTPLHYAVYNNNPEFVKYLLDLGANP--NLVNKYGDTPLHIAIL--NNNKEIFKLLLN  304 (480)
T ss_pred             CCCC--CCCHHHHHHHcCCHHHHHHHHHcCCCC--CccCCCCCcHHHHHHH--hCCHHHHHHHHh
Confidence            5444  556666666666666666666666633  5555566666666552  223445554444

>PHA02859 ankyrin repeat protein; Provisional

Probab=99.86  E-value=3.9e-21  Score=144.59  Aligned_cols=120  Identities=16%  Similarity=0.133  Sum_probs=105.6

Q ss_pred             hhhhcccC-CCCChHHHHHHHc---CCHHHHHHHHHCCCCccccccCCCCCCCcHHHHHHH--CCcHHHHHHHHHcCCCC
Q 028370           25 FRSVIDTD-DRGWTPLHIGARK---GDIKLVKQLLDEGMDVNVAAWGPKSKGVTPLHLAAQ--GGHLEVMDVLLERGADI   98 (210)
Q Consensus        25 ~~~~~~~d-~~g~t~L~~A~~~---g~~~~v~~Ll~~g~~~~~~~~~~~~~g~t~L~~A~~--~~~~~~v~~Ll~~g~~~   98 (210)
                      ..+++.++ ..|.||||+|+..   ++.+++++|+++|++++..    +..|.||||+|+.  .++.+++++|++.|+++
T Consensus        76 gadvn~~~~~~g~TpLh~a~~~~~~~~~eiv~~Ll~~gadin~~----d~~G~TpLh~a~~~~~~~~~iv~~Li~~gadi  151 (209)
T PHA02859         76 GADVNFKTRDNNLSALHHYLSFNKNVEPEILKILIDSGSSITEE----DEDGKNLLHMYMCNFNVRINVIKLLIDSGVSF  151 (209)
T ss_pred             CCCCCccCCCCCCCHHHHHHHhCccccHHHHHHHHHCCCCCCCc----CCCCCCHHHHHHHhccCCHHHHHHHHHcCCCc
Confidence            35666676 4799999998764   4799999999999999988    9999999999876  46899999999999999


Q ss_pred             CcccCCCCCChHHHH-HHhcCCHHHHHHHHHcCCCCCCCCCCCCCCCcccccccc
Q 028370           99 DARTKGACGWTPLHT-AAKERKKEAVRFLIENGAFLPDDINDSRFNPPLHYCPSL  152 (210)
Q Consensus        99 ~~~~~~~~g~tpL~~-A~~~g~~~~v~~Ll~~g~~~~~~~~~~~g~t~l~~a~~~  152 (210)
                      +..+.+  |.||||. |+..++.+++++|+++|+++  +.+|..|.||+++|...
T Consensus       152 n~~d~~--g~t~Lh~~a~~~~~~~iv~~Ll~~Gadi--~~~d~~g~tpl~la~~~  202 (209)
T PHA02859        152 LNKDFD--NNNILYSYILFHSDKKIFDFLTSLGIDI--NETNKSGYNCYDLIKFR  202 (209)
T ss_pred             ccccCC--CCcHHHHHHHhcCCHHHHHHHHHcCCCC--CCCCCCCCCHHHHHhhh
Confidence            998877  9999996 56688999999999999966  88999999999999843

>PHA02946 ankyin-like protein; Provisional

Probab=99.86  E-value=2.4e-21  Score=160.82  Aligned_cols=135  Identities=24%  Similarity=0.321  Sum_probs=103.1

Q ss_pred             hhhhcccCCCCChHHHHHHHcCCHHHHHHHHHCCCCccccccCCCCCCCcHHHHHHHCC--cHHHHHHHHHcCCCCCcc-
Q 028370           25 FRSVIDTDDRGWTPLHIGARKGDIKLVKQLLDEGMDVNVAAWGPKSKGVTPLHLAAQGG--HLEVMDVLLERGADIDAR-  101 (210)
Q Consensus        25 ~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~g~t~L~~A~~~~--~~~~v~~Ll~~g~~~~~~-  101 (210)
                      ..+++.+|..|.||||+|++.|+.+++++|+++|++++..    |..|.||||+|+..+  ..+++++|+++|++++.. 
T Consensus        62 Gadvn~~d~~G~TpLh~Aa~~g~~eiv~lLL~~GAdin~~----d~~g~TpLh~A~~~~~~~~e~v~lLl~~Gadin~~~  137 (446)
T PHA02946         62 GYSPNETDDDGNYPLHIASKINNNRIVAMLLTHGADPNAC----DKQHKTPLYYLSGTDDEVIERINLLVQYGAKINNSV  137 (446)
T ss_pred             cCCCCccCCCCCCHHHHHHHcCCHHHHHHHHHCcCCCCCC----CCCCCCHHHHHHHcCCchHHHHHHHHHcCCCccccc
Confidence            3567889999999999999999999999999999999988    899999999988765  367788888888777632 


Q ss_pred             cCC------------------------------CCCChHHHHHHhcCC--HHHHHHHHHcCCCCCCCCCCCCCCCccccc
Q 028370          102 TKG------------------------------ACGWTPLHTAAKERK--KEAVRFLIENGAFLPDDINDSRFNPPLHYC  149 (210)
Q Consensus       102 ~~~------------------------------~~g~tpL~~A~~~g~--~~~v~~Ll~~g~~~~~~~~~~~g~t~l~~a  149 (210)
                      +..                              ..|.||||+|+..++  .+++++|+++|+++  +.+|..|.||||+|
T Consensus       138 d~~g~tpL~aa~~~~~~vv~~Ll~~gad~~~~d~~G~t~Lh~A~~~~~~~~~~v~~Ll~~Gadi--n~~d~~G~TpLH~A  215 (446)
T PHA02946        138 DEEGCGPLLACTDPSERVFKKIMSIGFEARIVDKFGKNHIHRHLMSDNPKASTISWMMKLGISP--SKPDHDGNTPLHIV  215 (446)
T ss_pred             CCCCCcHHHHHHCCChHHHHHHHhccccccccCCCCCCHHHHHHHhcCCCHHHHHHHHHcCCCC--cccCCCCCCHHHHH
Confidence            221                              226666666655433  57778888888855  77788888888888


Q ss_pred             ccchHHHHHHHHHhhh
Q 028370          150 PSLEWAYEEMMRFQRE  165 (210)
Q Consensus       150 ~~~~~~~~~~~~~l~~  165 (210)
                      +..+....++++++.+
T Consensus       216 a~~~~~~~~iv~lLl~  231 (446)
T PHA02946        216 CSKTVKNVDIINLLLP  231 (446)
T ss_pred             HHcCCCcHHHHHHHHc
Confidence            8654344667776664

>PHA02884 ankyrin repeat protein; Provisional

Probab=99.86  E-value=9.8e-21  Score=148.15  Aligned_cols=125  Identities=16%  Similarity=0.235  Sum_probs=107.1

Q ss_pred             HhhhhcccCCCCChH-HHHHHHcCCHHHHHHHHHCCCCccccccCCCCCCCcHHHHHHHCCcHHHHHHHHHcCCCCCccc
Q 028370           24 FFRSVIDTDDRGWTP-LHIGARKGDIKLVKQLLDEGMDVNVAAWGPKSKGVTPLHLAAQGGHLEVMDVLLERGADIDART  102 (210)
Q Consensus        24 ~~~~~~~~d~~g~t~-L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~  102 (210)
                      |.-.+..+|..|+|+ ||.|++.|+.++++.|+++|++++......+..|.||||+|+..++.+++++|+++|++++..+
T Consensus        21 ~~~~~~~~d~~~~~~lL~~A~~~~~~eivk~LL~~GAdiN~~~~~sd~~g~TpLh~Aa~~~~~eivklLL~~GADVN~~~  100 (300)
T PHA02884         21 FYIAIKKKNKICIANILYSSIKFHYTDIIDAILKLGADPEAPFPLSENSKTNPLIYAIDCDNDDAAKLLIRYGADVNRYA  100 (300)
T ss_pred             HHHHhhccCcCCCCHHHHHHHHcCCHHHHHHHHHCCCCccccCcccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCcCccc
Confidence            334466789988875 6777888999999999999999987510003579999999999999999999999999999754


Q ss_pred             -CCCCCChHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCCCCCcccccccc
Q 028370          103 -KGACGWTPLHTAAKERKKEAVRFLIENGAFLPDDINDSRFNPPLHYCPSL  152 (210)
Q Consensus       103 -~~~~g~tpL~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~g~t~l~~a~~~  152 (210)
                       ..  |.||||+|+..|+.+++++|+++|+++  +.++..|.||+++|+..
T Consensus       101 ~~~--g~TpLh~Aa~~~~~eivklLL~~GAdi--n~kd~~G~TpL~~A~~~  147 (300)
T PHA02884        101 EEA--KITPLYISVLHGCLKCLEILLSYGADI--NIQTNDMVTPIELALMI  147 (300)
T ss_pred             CCC--CCCHHHHHHHcCCHHHHHHHHHCCCCC--CCCCCCCCCHHHHHHHh
Confidence             34  899999999999999999999999966  88999999999999853

>PHA03100 ankyrin repeat protein; Provisional

Probab=99.86  E-value=8.7e-21  Score=159.46  Aligned_cols=132  Identities=33%  Similarity=0.507  Sum_probs=93.7

Q ss_pred             hhcccCCCCChHHHHHHHcC--CHHHHHHHHHCCCCccccccCCCCCCCcHHHHHHHCCcHHHHHHHHHcCCCCCcccCC
Q 028370           27 SVIDTDDRGWTPLHIGARKG--DIKLVKQLLDEGMDVNVAAWGPKSKGVTPLHLAAQGGHLEVMDVLLERGADIDARTKG  104 (210)
Q Consensus        27 ~~~~~d~~g~t~L~~A~~~g--~~~~v~~Ll~~g~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~  104 (210)
                      +++.+|..|.||||.|+..|  +.+++++|+++|++++..    +..|.||||+|+..|+.+++++|+++|++++..+..
T Consensus       133 ~~~~~~~~g~t~L~~A~~~~~~~~~iv~~Ll~~g~din~~----d~~g~tpL~~A~~~~~~~iv~~Ll~~ga~~~~~~~~  208 (480)
T PHA03100        133 NVNIKNSDGENLLHLYLESNKIDLKILKLLIDKGVDINAK----NRYGYTPLHIAVEKGNIDVIKFLLDNGADINAGDIE  208 (480)
T ss_pred             CCCccCCCCCcHHHHHHHcCCChHHHHHHHHHCCCCcccc----cCCCCCHHHHHHHhCCHHHHHHHHHcCCCccCCCCC
Confidence            44556667777777777777  777777777777777666    667777777777777777777777777777666554


Q ss_pred             CCC------ChHHHHHHhcCC--HHHHHHHHHcCCCCCCCCCCCCCCCcccccccchHHHHHHHHHhhhhhh
Q 028370          105 ACG------WTPLHTAAKERK--KEAVRFLIENGAFLPDDINDSRFNPPLHYCPSLEWAYEEMMRFQRESFS  168 (210)
Q Consensus       105 ~~g------~tpL~~A~~~g~--~~~v~~Ll~~g~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~~~l~~~~~  168 (210)
                        |      .||||.|+..|+  .+++++|+++|+++  +.+|..|.||||+|+..+  ..+++++|.+...
T Consensus       209 --~~~~~~~~t~l~~a~~~~~~~~~iv~~Ll~~g~di--n~~d~~g~TpL~~A~~~~--~~~iv~~Ll~~ga  274 (480)
T PHA03100        209 --TLLFTIFETPLHIAACYNEITLEVVNYLLSYGVPI--NIKDVYGFTPLHYAVYNN--NPEFVKYLLDLGA  274 (480)
T ss_pred             --CCcHHHHHhHHHHHHHhCcCcHHHHHHHHHcCCCC--CCCCCCCCCHHHHHHHcC--CHHHHHHHHHcCC
Confidence              5      677777777777  77777777777754  677788888888887443  3677777776544

>PHA02798 ankyrin-like protein; Provisional

Probab=99.85  E-value=5.5e-21  Score=160.97  Aligned_cols=133  Identities=21%  Similarity=0.343  Sum_probs=97.6

Q ss_pred             hhhhcccCCCCChHHHHHHHcC---CHHHHHHHHHCCCCccccccCCCCCCCcHHHHHHHCCc---HHHHHHHHHcCCCC
Q 028370           25 FRSVIDTDDRGWTPLHIGARKG---DIKLVKQLLDEGMDVNVAAWGPKSKGVTPLHLAAQGGH---LEVMDVLLERGADI   98 (210)
Q Consensus        25 ~~~~~~~d~~g~t~L~~A~~~g---~~~~v~~Ll~~g~~~~~~~~~~~~~g~t~L~~A~~~~~---~~~v~~Ll~~g~~~   98 (210)
                      ..+++.+|..|.||||+|+.++   +.+++++|+++|++++..    +..|.||||+|+..++   .+++++|++.|+++
T Consensus        99 GadiN~~d~~G~TpLh~a~~~~~~~~~~iv~~Ll~~Gadvn~~----d~~g~tpL~~a~~~~~~~~~~vv~~Ll~~gadi  174 (489)
T PHA02798         99 GADINKKNSDGETPLYCLLSNGYINNLEILLFMIENGADTTLL----DKDGFTMLQVYLQSNHHIDIEIIKLLLEKGVDI  174 (489)
T ss_pred             CCCCCCCCCCcCcHHHHHHHcCCcChHHHHHHHHHcCCCcccc----CCCCCcHHHHHHHcCCcchHHHHHHHHHhCCCc
Confidence            4556778888888888888775   678888888888888877    7888888888888776   77777777777665


Q ss_pred             Cccc---------------------------------------------------------------------------C
Q 028370           99 DART---------------------------------------------------------------------------K  103 (210)
Q Consensus        99 ~~~~---------------------------------------------------------------------------~  103 (210)
                      +..+                                                                           .
T Consensus       175 n~~~~~~~~t~Lh~~~~~~~~~~~~~ivk~Li~~Ga~i~~~~~~~~~~~~~~l~~l~~~~~~~~~~i~~~l~~~~dvN~~  254 (489)
T PHA02798        175 NTHNNKEKYDTLHCYFKYNIDRIDADILKLFVDNGFIINKENKSHKKKFMEYLNSLLYDNKRFKKNILDFIFSYIDINQV  254 (489)
T ss_pred             ccccCcCCCcHHHHHHHhccccCCHHHHHHHHHCCCCcccCCccccchHHHHHHHHHhhcccchHHHHHHHHhcCCCCCc
Confidence            4331                                                                           1


Q ss_pred             CCCCChHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCCCCCcccccccchHHHHHHHHHhhh
Q 028370          104 GACGWTPLHTAAKERKKEAVRFLIENGAFLPDDINDSRFNPPLHYCPSLEWAYEEMMRFQRE  165 (210)
Q Consensus       104 ~~~g~tpL~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~~~l~~  165 (210)
                      +..|.||||+|+..|+.+++++|+++|+++  +..+..|.|||++|+..+  ..++++.+.+
T Consensus       255 d~~G~TPL~~A~~~~~~~~v~~LL~~GAdi--n~~d~~G~TpL~~A~~~~--~~~iv~~lL~  312 (489)
T PHA02798        255 DELGFNPLYYSVSHNNRKIFEYLLQLGGDI--NIITELGNTCLFTAFENE--SKFIFNSILN  312 (489)
T ss_pred             CcCCccHHHHHHHcCcHHHHHHHHHcCCcc--cccCCCCCcHHHHHHHcC--cHHHHHHHHc
Confidence            123778888888888888888888888855  778888888888887433  3555555543

>PHA02736 Viral ankyrin protein; Provisional

Probab=99.85  E-value=2.8e-21  Score=138.75  Aligned_cols=130  Identities=25%  Similarity=0.315  Sum_probs=102.5

Q ss_pred             hcccCCCCChHHHHHHHcCCHHHHHHHHHCCCC-----ccccccCCCCCCCcHHHHHHHCCcH---HHHHHHHHcCCCCC
Q 028370           28 VIDTDDRGWTPLHIGARKGDIKLVKQLLDEGMD-----VNVAAWGPKSKGVTPLHLAAQGGHL---EVMDVLLERGADID   99 (210)
Q Consensus        28 ~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~-----~~~~~~~~~~~g~t~L~~A~~~~~~---~~v~~Ll~~g~~~~   99 (210)
                      .+.+|..|.||||+|++.|+...+........+     +...    |..|.||||+|+..++.   +++++|++.|++++
T Consensus        10 ~~~~d~~g~tpLh~A~~~g~~~~l~~~~~~~~~~~~~~~~~~----d~~g~t~Lh~a~~~~~~~~~e~v~~Ll~~gadin   85 (154)
T PHA02736         10 ASEPDIEGENILHYLCRNGGVTDLLAFKNAISDENRYLVLEY----NRHGKQCVHIVSNPDKADPQEKLKLLMEWGADIN   85 (154)
T ss_pred             HHhcCCCCCCHHHHHHHhCCHHHHHHHHHHhcchhHHHHHHh----cCCCCEEEEeecccCchhHHHHHHHHHHcCCCcc
Confidence            456899999999999999984322222121112     1223    78899999999999986   46899999999999


Q ss_pred             cccC-CCCCChHHHHHHhcCCHHHHHHHHHc-CCCCCCCCCCCCCCCcccccccchHHHHHHHHHhhhhh
Q 028370          100 ARTK-GACGWTPLHTAAKERKKEAVRFLIEN-GAFLPDDINDSRFNPPLHYCPSLEWAYEEMMRFQRESF  167 (210)
Q Consensus       100 ~~~~-~~~g~tpL~~A~~~g~~~~v~~Ll~~-g~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~~~l~~~~  167 (210)
                      .++. .  |.||||+|+..|+.+++++|+.. |+++  +.++..|.||||+|+..  +..+++++|....
T Consensus        86 ~~~~~~--g~T~Lh~A~~~~~~~i~~~Ll~~~g~d~--n~~~~~g~tpL~~A~~~--~~~~i~~~Ll~~g  149 (154)
T PHA02736         86 GKERVF--GNTPLHIAVYTQNYELATWLCNQPGVNM--EILNYAFKTPYYVACER--HDAKMMNILRAKG  149 (154)
T ss_pred             ccCCCC--CCcHHHHHHHhCCHHHHHHHHhCCCCCC--ccccCCCCCHHHHHHHc--CCHHHHHHHHHcC
Confidence            8863 5  99999999999999999999985 8855  88999999999999954  3467888776543

>PHA02716 CPXV016; CPX019; EVM010; Provisional

Probab=99.85  E-value=4.7e-21  Score=165.24  Aligned_cols=134  Identities=23%  Similarity=0.310  Sum_probs=103.7

Q ss_pred             hhhccc-CCCCChHHHHHHHc--CCHHHHHHHHHCCCCccccccCCCCCCCcHHHHHHHCCc--HHHHHHHHHcCCCCCc
Q 028370           26 RSVIDT-DDRGWTPLHIGARK--GDIKLVKQLLDEGMDVNVAAWGPKSKGVTPLHLAAQGGH--LEVMDVLLERGADIDA  100 (210)
Q Consensus        26 ~~~~~~-d~~g~t~L~~A~~~--g~~~~v~~Ll~~g~~~~~~~~~~~~~g~t~L~~A~~~~~--~~~v~~Ll~~g~~~~~  100 (210)
                      .+++.+ |..|.||||+|+..  ++.+++++|+++|++++..    |..|.||||+|+..|+  .+++++|++.|++++.
T Consensus       167 ADIN~~~d~~G~TpLH~A~~n~~~~~eIVklLLe~GADVN~k----D~~G~TPLH~Aa~~g~~~~eIVklLLe~GADVN~  242 (764)
T PHA02716        167 VNLNYVCKKTGYGILHAYLGNMYVDIDILEWLCNNGVNVNLQ----NNHLITPLHTYLITGNVCASVIKKIIELGGDMDM  242 (764)
T ss_pred             CCcccccCCCCCcHHHHHHHhccCCHHHHHHHHHcCCCCCCC----CCCCCCHHHHHHHcCCCCHHHHHHHHHcCCCCCC
Confidence            345666 77888888887643  5788888888888888887    8888888888888885  4788888888888888


Q ss_pred             ccCCCCCChHHHHH-------------------------------------HhcCCHHHHHHHHHcCCCCCCCCCCCCCC
Q 028370          101 RTKGACGWTPLHTA-------------------------------------AKERKKEAVRFLIENGAFLPDDINDSRFN  143 (210)
Q Consensus       101 ~~~~~~g~tpL~~A-------------------------------------~~~g~~~~v~~Ll~~g~~~~~~~~~~~g~  143 (210)
                      ++..  |.||||+|                                     +..|+.+++++|+++|+++  +.+|..|+
T Consensus       243 kD~~--G~TPLh~Ai~~a~n~~~EIvkiLie~~d~n~~~~~~~~L~~~i~AA~~g~leiVklLLe~GAdI--N~kD~~G~  318 (764)
T PHA02716        243 KCVN--GMSPIMTYIINIDNINPEITNIYIESLDGNKVKNIPMILHSYITLARNIDISVVYSFLQPGVKL--HYKDSAGR  318 (764)
T ss_pred             CCCC--CCCHHHHHHHhhhccCHHHHHHHHHhccccccccchhhhHHHHHHHHcCCHHHHHHHHhCCCce--eccCCCCC
Confidence            8776  88888865                                     3346778888888888865  77888888


Q ss_pred             CcccccccchHHHHHHHHHhhhhh
Q 028370          144 PPLHYCPSLEWAYEEMMRFQRESF  167 (210)
Q Consensus       144 t~l~~a~~~~~~~~~~~~~l~~~~  167 (210)
                      ||||+|+....+..+++++|.+..
T Consensus       319 TPLH~Aaa~~~~~~eIVklLLe~G  342 (764)
T PHA02716        319 TCLHQYILRHNISTDIIKLLHEYG  342 (764)
T ss_pred             CHHHHHHHHhCCCchHHHHHHHcC
Confidence            888887643434567788777653

>PHA02989 ankyrin repeat protein; Provisional

Probab=99.85  E-value=1.7e-20  Score=158.23  Aligned_cols=135  Identities=21%  Similarity=0.299  Sum_probs=107.3

Q ss_pred             hhhh-cccCCCCChHHHHHHHc--CCHHHHHHHHHCCCCccccccCCCCCCCcHHHHHHHCC----cHHHHHHHHHcCCC
Q 028370           25 FRSV-IDTDDRGWTPLHIGARK--GDIKLVKQLLDEGMDVNVAAWGPKSKGVTPLHLAAQGG----HLEVMDVLLERGAD   97 (210)
Q Consensus        25 ~~~~-~~~d~~g~t~L~~A~~~--g~~~~v~~Ll~~g~~~~~~~~~~~~~g~t~L~~A~~~~----~~~~v~~Ll~~g~~   97 (210)
                      ..++ +.+|..|+||||+|+..  ++.++++.|+++|++++...   +..|.||||+|+..+    +.+++++|++.|++
T Consensus       134 Gadin~~~d~~g~tpLh~a~~~~~~~~~iv~~Ll~~Gadi~~~~---~~~g~tpL~~a~~~~~~~~~~~iv~~Ll~~Ga~  210 (494)
T PHA02989        134 GINVNDVKNSRGYNLLHMYLESFSVKKDVIKILLSFGVNLFEKT---SLYGLTPMNIYLRNDIDVISIKVIKYLIKKGVN  210 (494)
T ss_pred             CCCcccccCCCCCCHHHHHHHhccCCHHHHHHHHHcCCCccccc---cccCCChHHHHHhcccccccHHHHHHHHhCCCC
Confidence            3455 56788899999988764  57889999999998887632   677889999887654    78889999988887


Q ss_pred             CCcccC------------------------------------CCCCChHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCC
Q 028370           98 IDARTK------------------------------------GACGWTPLHTAAKERKKEAVRFLIENGAFLPDDINDSR  141 (210)
Q Consensus        98 ~~~~~~------------------------------------~~~g~tpL~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~  141 (210)
                      ++..+.                                    +..|.||||+|+..|+.+++++|++.|+++  +.+|..
T Consensus       211 vn~~~~~~~t~l~~~~~~~~~~~~~~~~il~~l~~~advn~~d~~G~TpL~~Aa~~~~~~~v~~LL~~Gadi--n~~d~~  288 (494)
T PHA02989        211 IETNNNGSESVLESFLDNNKILSKKEFKVLNFILKYIKINKKDKKGFNPLLISAKVDNYEAFNYLLKLGDDI--YNVSKD  288 (494)
T ss_pred             ccccCCccccHHHHHHHhchhhcccchHHHHHHHhCCCCCCCCCCCCCHHHHHHHhcCHHHHHHHHHcCCCc--cccCCC
Confidence            765431                                    234899999999999999999999999966  889999


Q ss_pred             CCCcccccccchHHHHHHHHHhhhh
Q 028370          142 FNPPLHYCPSLEWAYEEMMRFQRES  166 (210)
Q Consensus       142 g~t~l~~a~~~~~~~~~~~~~l~~~  166 (210)
                      |.|||++|+..  +..++++.+.+.
T Consensus       289 G~TpL~~A~~~--~~~~iv~~LL~~  311 (494)
T PHA02989        289 GDTVLTYAIKH--GNIDMLNRILQL  311 (494)
T ss_pred             CCCHHHHHHHc--CCHHHHHHHHhc
Confidence            99999999854  446777776654

>PHA02716 CPXV016; CPX019; EVM010; Provisional

Probab=99.85  E-value=8.5e-21  Score=163.69  Aligned_cols=135  Identities=21%  Similarity=0.237  Sum_probs=115.7

Q ss_pred             hhhhcccCCCCChHHHHHHHcCC--HHHHHHHHHCCCCccccccCCCCCCCcHHHHH-----------------------
Q 028370           25 FRSVIDTDDRGWTPLHIGARKGD--IKLVKQLLDEGMDVNVAAWGPKSKGVTPLHLA-----------------------   79 (210)
Q Consensus        25 ~~~~~~~d~~g~t~L~~A~~~g~--~~~v~~Ll~~g~~~~~~~~~~~~~g~t~L~~A-----------------------   79 (210)
                      ..+++.+|..|.||||+|++.|+  .++++.|+++|++++..    +..|.||||+|                       
T Consensus       202 GADVN~kD~~G~TPLH~Aa~~g~~~~eIVklLLe~GADVN~k----D~~G~TPLh~Ai~~a~n~~~EIvkiLie~~d~n~  277 (764)
T PHA02716        202 GVNVNLQNNHLITPLHTYLITGNVCASVIKKIIELGGDMDMK----CVNGMSPIMTYIINIDNINPEITNIYIESLDGNK  277 (764)
T ss_pred             CCCCCCCCCCCCCHHHHHHHcCCCCHHHHHHHHHcCCCCCCC----CCCCCCHHHHHHHhhhccCHHHHHHHHHhccccc
Confidence            45678899999999999999995  59999999999999988    89999999975                       


Q ss_pred             --------------HHCCcHHHHHHHHHcCCCCCcccCCCCCChHHHHHHh--cCCHHHHHHHHHcCCCCCCCCCCCCCC
Q 028370           80 --------------AQGGHLEVMDVLLERGADIDARTKGACGWTPLHTAAK--ERKKEAVRFLIENGAFLPDDINDSRFN  143 (210)
Q Consensus        80 --------------~~~~~~~~v~~Ll~~g~~~~~~~~~~~g~tpL~~A~~--~g~~~~v~~Ll~~g~~~~~~~~~~~g~  143 (210)
                                    +..|+.+++++|++.|++++.++..  |+||||+|+.  .++.+++++|+++|+++  +.+|..|.
T Consensus       278 ~~~~~~~L~~~i~AA~~g~leiVklLLe~GAdIN~kD~~--G~TPLH~Aaa~~~~~~eIVklLLe~GADI--N~kD~~G~  353 (764)
T PHA02716        278 VKNIPMILHSYITLARNIDISVVYSFLQPGVKLHYKDSA--GRTCLHQYILRHNISTDIIKLLHEYGNDL--NEPDNIGN  353 (764)
T ss_pred             cccchhhhHHHHHHHHcCCHHHHHHHHhCCCceeccCCC--CCCHHHHHHHHhCCCchHHHHHHHcCCCC--ccCCCCCC
Confidence                          3457788999999999999998877  9999999865  46799999999999966  88999999


Q ss_pred             Ccccccccc------------hHHHHHHHHHhhhhh
Q 028370          144 PPLHYCPSL------------EWAYEEMMRFQRESF  167 (210)
Q Consensus       144 t~l~~a~~~------------~~~~~~~~~~l~~~~  167 (210)
                      ||||+|+..            ..+..+++++|.+..
T Consensus       354 TPLH~A~~~lav~~~ld~~~~~~~~~eVVklLL~~G  389 (764)
T PHA02716        354 TVLHTYLSMLSVVNILDPETDNDIRLDVIQCLISLG  389 (764)
T ss_pred             CHHHHHHHhhhhhccccccccccChHHHHHHHHHCC
Confidence            999987631            124578888888764

>PHA02946 ankyin-like protein; Provisional

Probab=99.84  E-value=3.7e-20  Score=153.82  Aligned_cols=135  Identities=15%  Similarity=0.159  Sum_probs=96.6

Q ss_pred             hhcccCCCCChHHHHHHHcCC--HHHHHHHHHCCCCccccc-----------------------------cCCCCCCCcH
Q 028370           27 SVIDTDDRGWTPLHIGARKGD--IKLVKQLLDEGMDVNVAA-----------------------------WGPKSKGVTP   75 (210)
Q Consensus        27 ~~~~~d~~g~t~L~~A~~~g~--~~~v~~Ll~~g~~~~~~~-----------------------------~~~~~~g~t~   75 (210)
                      +++.+|..|+||||+|+..++  .+++++|+++|++++...                             ...|..|+||
T Consensus        97 din~~d~~g~TpLh~A~~~~~~~~e~v~lLl~~Gadin~~~d~~g~tpL~aa~~~~~~vv~~Ll~~gad~~~~d~~G~t~  176 (446)
T PHA02946         97 DPNACDKQHKTPLYYLSGTDDEVIERINLLVQYGAKINNSVDEEGCGPLLACTDPSERVFKKIMSIGFEARIVDKFGKNH  176 (446)
T ss_pred             CCCCCCCCCCCHHHHHHHcCCchHHHHHHHHHcCCCcccccCCCCCcHHHHHHCCChHHHHHHHhccccccccCCCCCCH
Confidence            344556666666666655442  455556665555554211                             0016678888


Q ss_pred             HHHHHHCC--cHHHHHHHHHcCCCCCcccCCCCCChHHHHHHhcC--CHHHHHHHHHcCCCCCCCCCCCCCCCccccccc
Q 028370           76 LHLAAQGG--HLEVMDVLLERGADIDARTKGACGWTPLHTAAKER--KKEAVRFLIENGAFLPDDINDSRFNPPLHYCPS  151 (210)
Q Consensus        76 L~~A~~~~--~~~~v~~Ll~~g~~~~~~~~~~~g~tpL~~A~~~g--~~~~v~~Ll~~g~~~~~~~~~~~g~t~l~~a~~  151 (210)
                      ||+|+..+  +.+++++|++.|++++.++.+  |.||||+|+..|  +.+++++|++ |+++  +.+|..|.||||+|+.
T Consensus       177 Lh~A~~~~~~~~~~v~~Ll~~Gadin~~d~~--G~TpLH~Aa~~~~~~~~iv~lLl~-gadi--n~~d~~G~TpLh~A~~  251 (446)
T PHA02946        177 IHRHLMSDNPKASTISWMMKLGISPSKPDHD--GNTPLHIVCSKTVKNVDIINLLLP-STDV--NKQNKFGDSPLTLLIK  251 (446)
T ss_pred             HHHHHHhcCCCHHHHHHHHHcCCCCcccCCC--CCCHHHHHHHcCCCcHHHHHHHHc-CCCC--CCCCCCCCCHHHHHHH
Confidence            88877654  468899999999999998877  999999999976  7899999995 8855  8999999999999985


Q ss_pred             chHHHHHHHHHhhhhh
Q 028370          152 LEWAYEEMMRFQRESF  167 (210)
Q Consensus       152 ~~~~~~~~~~~l~~~~  167 (210)
                      .+. ..++++++....
T Consensus       252 ~~~-~~~~~~~Ll~~g  266 (446)
T PHA02946        252 TLS-PAHLINKLLSTS  266 (446)
T ss_pred             hCC-hHHHHHHHHhCC
Confidence            432 246777766554

>PLN03192 Voltage-dependent potassium channel; Provisional

Probab=99.84  E-value=2.8e-20  Score=165.05  Aligned_cols=145  Identities=25%  Similarity=0.250  Sum_probs=121.6

Q ss_pred             chhHHHHHHhhHHHhhhhcccCCCCChHHHHHHHcCCHHHHHHHHHCCCCccccccCCCCCCCcHHHHHHHCCcHHHHHH
Q 028370           11 GPFTLQRKASRKRFFRSVIDTDDRGWTPLHIGARKGDIKLVKQLLDEGMDVNVAAWGPKSKGVTPLHLAAQGGHLEVMDV   90 (210)
Q Consensus        11 ~~~~~~~~~~~~~~~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~   90 (210)
                      |+........+.  ..+++..|..|+||||.|+.+|+.++++.|+++|++++..    |..|.||||+|+..|+.+++++
T Consensus       536 g~~~~l~~Ll~~--G~d~n~~d~~G~TpLh~Aa~~g~~~~v~~Ll~~gadin~~----d~~G~TpL~~A~~~g~~~iv~~  609 (823)
T PLN03192        536 GNAALLEELLKA--KLDPDIGDSKGRTPLHIAASKGYEDCVLVLLKHACNVHIR----DANGNTALWNAISAKHHKIFRI  609 (823)
T ss_pred             CCHHHHHHHHHC--CCCCCCCCCCCCCHHHHHHHcChHHHHHHHHhcCCCCCCc----CCCCCCHHHHHHHhCCHHHHHH
Confidence            444444443332  3457889999999999999999999999999999999988    8999999999999999999999


Q ss_pred             HHHcCCCCCcccCCCCCChHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCCCCCcccccccchHHHHHHHHHhhhhhhc
Q 028370           91 LLERGADIDARTKGACGWTPLHTAAKERKKEAVRFLIENGAFLPDDINDSRFNPPLHYCPSLEWAYEEMMRFQRESFSA  169 (210)
Q Consensus        91 Ll~~g~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~~~l~~~~~~  169 (210)
                      |+..++..+..  .  +.++||.|+..|+.++++.|+++|+++  +.+|..|.||||+|+..  +..+++++|.+....
T Consensus       610 L~~~~~~~~~~--~--~~~~L~~Aa~~g~~~~v~~Ll~~Gadi--n~~d~~G~TpLh~A~~~--g~~~iv~~Ll~~GAd  680 (823)
T PLN03192        610 LYHFASISDPH--A--AGDLLCTAAKRNDLTAMKELLKQGLNV--DSEDHQGATALQVAMAE--DHVDMVRLLIMNGAD  680 (823)
T ss_pred             HHhcCcccCcc--c--CchHHHHHHHhCCHHHHHHHHHCCCCC--CCCCCCCCCHHHHHHHC--CcHHHHHHHHHcCCC
Confidence            99887655432  2  679999999999999999999999966  88999999999999954  458999999876543

>KOG0195 consensus Integrin-linked kinase [Signal transduction mechanisms]

Probab=99.83  E-value=2.3e-20  Score=140.84  Aligned_cols=117  Identities=36%  Similarity=0.514  Sum_probs=110.3

Q ss_pred             hhhcccCCCCChHHHHHHHcCCHHHHHHHHHCCCCccccccCCCCCCCcHHHHHHHCCcHHHHHHHHHcCCCCCcccCCC
Q 028370           26 RSVIDTDDRGWTPLHIGARKGDIKLVKQLLDEGMDVNVAAWGPKSKGVTPLHLAAQGGHLEVMDVLLERGADIDARTKGA  105 (210)
Q Consensus        26 ~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~  105 (210)
                      .+++.-|..|.+|||||++.|+..+++.|+++|+.+|..    +....||||.|+..|+.++|+-|++..+|++..+.- 
T Consensus        25 hdln~gddhgfsplhwaakegh~aivemll~rgarvn~t----nmgddtplhlaaahghrdivqkll~~kadvnavneh-   99 (448)
T KOG0195|consen   25 HDLNVGDDHGFSPLHWAAKEGHVAIVEMLLSRGARVNST----NMGDDTPLHLAAAHGHRDIVQKLLSRKADVNAVNEH-   99 (448)
T ss_pred             cccccccccCcchhhhhhhcccHHHHHHHHhcccccccc----cCCCCcchhhhhhcccHHHHHHHHHHhcccchhhcc-
Confidence            456778899999999999999999999999999999988    788889999999999999999999999999999877 


Q ss_pred             CCChHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCCCCCcccccc
Q 028370          106 CGWTPLHTAAKERKKEAVRFLIENGAFLPDDINDSRFNPPLHYCP  150 (210)
Q Consensus       106 ~g~tpL~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~g~t~l~~a~  150 (210)
                       |+|||||||.-|.-++++=|+..|+-+  ++-|++|.||++.|.
T Consensus       100 -gntplhyacfwgydqiaedli~~ga~v--~icnk~g~tpldkak  141 (448)
T KOG0195|consen  100 -GNTPLHYACFWGYDQIAEDLISCGAAV--NICNKKGMTPLDKAK  141 (448)
T ss_pred             -CCCchhhhhhhcHHHHHHHHHhcccee--eecccCCCCchhhhc
Confidence             999999999999999999999999965  999999999999886

>PHA02743 Viral ankyrin protein; Provisional

Probab=99.83  E-value=7.1e-20  Score=132.99  Aligned_cols=110  Identities=26%  Similarity=0.254  Sum_probs=97.4

Q ss_pred             hhhcccCCCCChHHHHHHHcCCHHH---HHHHHHCCCCccccccCCC-CCCCcHHHHHHHCCcHHHHHHHHH-cCCCCCc
Q 028370           26 RSVIDTDDRGWTPLHIGARKGDIKL---VKQLLDEGMDVNVAAWGPK-SKGVTPLHLAAQGGHLEVMDVLLE-RGADIDA  100 (210)
Q Consensus        26 ~~~~~~d~~g~t~L~~A~~~g~~~~---v~~Ll~~g~~~~~~~~~~~-~~g~t~L~~A~~~~~~~~v~~Ll~-~g~~~~~  100 (210)
                      ..++.+|..|+||||+|+..|+.+.   +++|++.|++++.+    + ..|.||||+|+..++.+++++|+. .|++++.
T Consensus        48 ~~~~~~d~~g~t~Lh~Aa~~g~~~~~~~i~~Ll~~Gadin~~----d~~~g~TpLh~A~~~g~~~iv~~Ll~~~gad~~~  123 (166)
T PHA02743         48 HLLHRYDHHGRQCTHMVAWYDRANAVMKIELLVNMGADINAR----ELGTGNTLLHIAASTKNYELAEWLCRQLGVNLGA  123 (166)
T ss_pred             hhhhccCCCCCcHHHHHHHhCccCHHHHHHHHHHcCCCCCCC----CCCCCCcHHHHHHHhCCHHHHHHHHhccCCCccC
Confidence            3466789999999999999988654   89999999999987    6 589999999999999999999995 7999998


Q ss_pred             ccCCCCCChHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCCCC
Q 028370          101 RTKGACGWTPLHTAAKERKKEAVRFLIENGAFLPDDINDSRFN  143 (210)
Q Consensus       101 ~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~g~  143 (210)
                      ++..  |.||||+|+..++.+++++|+++|+++  +.++..|.
T Consensus       124 ~d~~--g~tpL~~A~~~~~~~iv~~Ll~~ga~~--~~~~~~~~  162 (166)
T PHA02743        124 INYQ--HETAYHIAYKMRDRRMMEILRANGAVC--DDPLSIGL  162 (166)
T ss_pred             cCCC--CCCHHHHHHHcCCHHHHHHHHHcCCCC--CCcccCCc
Confidence            8776  999999999999999999999999966  66666554

>PHA03095 ankyrin-like protein; Provisional

Probab=99.83  E-value=3.9e-20  Score=155.14  Aligned_cols=130  Identities=32%  Similarity=0.343  Sum_probs=110.3

Q ss_pred             hhcccCCCCChHHHHHHHc--CCHHHHHHHHHCCCCccccccCCCCCCCcHHHHHHHCCcH--HHHHHHHHcCCCCCccc
Q 028370           27 SVIDTDDRGWTPLHIGARK--GDIKLVKQLLDEGMDVNVAAWGPKSKGVTPLHLAAQGGHL--EVMDVLLERGADIDART  102 (210)
Q Consensus        27 ~~~~~d~~g~t~L~~A~~~--g~~~~v~~Ll~~g~~~~~~~~~~~~~g~t~L~~A~~~~~~--~~v~~Ll~~g~~~~~~~  102 (210)
                      +++..|..|.||||.|+..  ++.++++.|++.|++++..    |..|.||||+|+..++.  .+++.|+..|++++.++
T Consensus       179 ~~~~~d~~g~t~Lh~~~~~~~~~~~i~~~Ll~~g~~~~~~----d~~g~tpLh~Aa~~~~~~~~~v~~ll~~g~din~~d  254 (471)
T PHA03095        179 DVYAVDDRFRSLLHHHLQSFKPRARIVRELIRAGCDPAAT----DMLGNTPLHSMATGSSCKRSLVLPLLIAGISINARN  254 (471)
T ss_pred             CCcccCCCCCCHHHHHHHHCCCcHHHHHHHHHcCCCCccc----CCCCCCHHHHHHhcCCchHHHHHHHHHcCCCCCCcC
Confidence            3455677888888888865  6788888999999998888    88999999999998874  57888999999999998


Q ss_pred             CCCCCChHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCCCCCcccccccchHHHHHHHHHhhhh
Q 028370          103 KGACGWTPLHTAAKERKKEAVRFLIENGAFLPDDINDSRFNPPLHYCPSLEWAYEEMMRFQRES  166 (210)
Q Consensus       103 ~~~~g~tpL~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~~~l~~~  166 (210)
                      ..  |.||||+|+..|+.+++++|+++|+++  +..+..|.||+++|+..  +..++++.+.+.
T Consensus       255 ~~--g~TpLh~A~~~~~~~~v~~LL~~gad~--n~~~~~g~tpl~~A~~~--~~~~~v~~LL~~  312 (471)
T PHA03095        255 RY--GQTPLHYAAVFNNPRACRRLIALGADI--NAVSSDGNTPLSLMVRN--NNGRAVRAALAK  312 (471)
T ss_pred             CC--CCCHHHHHHHcCCHHHHHHHHHcCCCC--cccCCCCCCHHHHHHHh--CCHHHHHHHHHh
Confidence            76  999999999999999999999999965  89999999999999844  446777766654

>KOG0508 consensus Ankyrin repeat protein [General function prediction only]

Probab=99.83  E-value=1e-20  Score=150.77  Aligned_cols=129  Identities=28%  Similarity=0.419  Sum_probs=116.9

Q ss_pred             cCCCCChHHHHHHHcCCHHHHHHHHHCCCCccccccCCCCCCCcHHHHHHHCCcHHHHHHHHHcCCCCCcccCCCCCChH
Q 028370           31 TDDRGWTPLHIGARKGDIKLVKQLLDEGMDVNVAAWGPKSKGVTPLHLAAQGGHLEVMDVLLERGADIDARTKGACGWTP  110 (210)
Q Consensus        31 ~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~~g~tp  110 (210)
                      ...+|-+||..|+..|++++|+.|+++|+++|..    .....|||..||.-|+.++|++|+++|+|++..++-  |.|.
T Consensus        80 e~IegappLWaAsaAGHl~vVk~L~~~ga~VN~t----T~TNStPLraACfDG~leivKyLvE~gad~~Ianrh--GhTc  153 (615)
T KOG0508|consen   80 ETIEGAPPLWAASAAGHLEVVKLLLRRGASVNDT----TRTNSTPLRAACFDGHLEIVKYLVEHGADPEIANRH--GHTC  153 (615)
T ss_pred             cccCCCchhhHHhccCcHHHHHHHHHhcCccccc----cccCCccHHHHHhcchhHHHHHHHHcCCCCcccccC--CCee
Confidence            3457889999999999999999999999999977    667789999999999999999999999999999887  9999


Q ss_pred             HHHHHhcCCHHHHHHHHHcCCCCCCCCCCCCCCCcccccccchHHHHHHHHHhhhhhhc
Q 028370          111 LHTAAKERKKEAVRFLIENGAFLPDDINDSRFNPPLHYCPSLEWAYEEMMRFQRESFSA  169 (210)
Q Consensus       111 L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~~~l~~~~~~  169 (210)
                      |++||..|+.+|+++|++.|+++  +.++..|+|+||.|++.  +..+++++|......
T Consensus       154 LmIa~ykGh~~I~qyLle~gADv--n~ks~kGNTALH~caEs--G~vdivq~Ll~~ga~  208 (615)
T KOG0508|consen  154 LMIACYKGHVDIAQYLLEQGADV--NAKSYKGNTALHDCAES--GSVDIVQLLLKHGAK  208 (615)
T ss_pred             EEeeeccCchHHHHHHHHhCCCc--chhcccCchHHHhhhhc--ccHHHHHHHHhCCce
Confidence            99999999999999999999966  99999999999999954  458999998875433

>PHA02798 ankyrin-like protein; Provisional

Probab=99.82  E-value=6.5e-20  Score=154.49  Aligned_cols=135  Identities=24%  Similarity=0.346  Sum_probs=114.2

Q ss_pred             hhhhcccCCCCChHHHHHHHc-----CCHHHHHHHHHCCCCccccccCCCCCCCcHHHHHHHCC---cHHHHHHHHHcCC
Q 028370           25 FRSVIDTDDRGWTPLHIGARK-----GDIKLVKQLLDEGMDVNVAAWGPKSKGVTPLHLAAQGG---HLEVMDVLLERGA   96 (210)
Q Consensus        25 ~~~~~~~d~~g~t~L~~A~~~-----g~~~~v~~Ll~~g~~~~~~~~~~~~~g~t~L~~A~~~~---~~~~v~~Ll~~g~   96 (210)
                      ..+++.+|..|.||||.|+.+     +..+++++|+++|++++..    +..|.||||+|+..+   +.+++++|+++|+
T Consensus        61 Gadvn~~d~~g~TpL~~~~~n~~~~~~~~~iv~~Ll~~GadiN~~----d~~G~TpLh~a~~~~~~~~~~iv~~Ll~~Ga  136 (489)
T PHA02798         61 GANVNGLDNEYSTPLCTILSNIKDYKHMLDIVKILIENGADINKK----NSDGETPLYCLLSNGYINNLEILLFMIENGA  136 (489)
T ss_pred             CCCCCCCCCCCCChHHHHHHhHHhHHhHHHHHHHHHHCCCCCCCC----CCCcCcHHHHHHHcCCcChHHHHHHHHHcCC
Confidence            456788999999999998864     6789999999999999988    899999999999875   6899999999999


Q ss_pred             CCCcccCCCCCChHHHHHHhcCC---HHHHHHHHHcCCCCCCCCC-CCCCCCcccccccc--hHHHHHHHHHhhhhh
Q 028370           97 DIDARTKGACGWTPLHTAAKERK---KEAVRFLIENGAFLPDDIN-DSRFNPPLHYCPSL--EWAYEEMMRFQRESF  167 (210)
Q Consensus        97 ~~~~~~~~~~g~tpL~~A~~~g~---~~~v~~Ll~~g~~~~~~~~-~~~g~t~l~~a~~~--~~~~~~~~~~l~~~~  167 (210)
                      +++..+..  |.||||+|+..++   .+++++|+++|+++  +.. +..|.||+|++...  .....+++++|.+..
T Consensus       137 dvn~~d~~--g~tpL~~a~~~~~~~~~~vv~~Ll~~gadi--n~~~~~~~~t~Lh~~~~~~~~~~~~~ivk~Li~~G  209 (489)
T PHA02798        137 DTTLLDKD--GFTMLQVYLQSNHHIDIEIIKLLLEKGVDI--NTHNNKEKYDTLHCYFKYNIDRIDADILKLFVDNG  209 (489)
T ss_pred             CccccCCC--CCcHHHHHHHcCCcchHHHHHHHHHhCCCc--ccccCcCCCcHHHHHHHhccccCCHHHHHHHHHCC
Confidence            99998877  9999999999987   99999999999976  555 45788999987642  123467788877654

>KOG0514 consensus Ankyrin repeat protein [General function prediction only]

Probab=99.82  E-value=5e-20  Score=142.63  Aligned_cols=149  Identities=28%  Similarity=0.339  Sum_probs=123.0

Q ss_pred             hcccCCCCChHHHHHHHcCCHHHHHHHHHCC-CCccccccCCCCCCCcHHHHHHH-----CCcHHHHHHHHHcCCCCCcc
Q 028370           28 VIDTDDRGWTPLHIGARKGDIKLVKQLLDEG-MDVNVAAWGPKSKGVTPLHLAAQ-----GGHLEVMDVLLERGADIDAR  101 (210)
Q Consensus        28 ~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g-~~~~~~~~~~~~~g~t~L~~A~~-----~~~~~~v~~Ll~~g~~~~~~  101 (210)
                      +|.-|.+|+|+||+++.++++++|+.|++.| ++++..    |+-|+||+|+++.     ..+..+|..|+.. .++|.+
T Consensus       261 VNlaDsNGNTALHYsVSHaNF~VV~~LLDSgvC~VD~q----NrAGYtpiMLaALA~lk~~~d~~vV~~LF~m-gnVNaK  335 (452)
T KOG0514|consen  261 VNLADSNGNTALHYAVSHANFDVVSILLDSGVCDVDQQ----NRAGYTPVMLAALAKLKQPADRTVVERLFKM-GDVNAK  335 (452)
T ss_pred             hhhhcCCCCeeeeeeecccchHHHHHHhccCccccccc----ccccccHHHHHHHHhhcchhhHHHHHHHHhc-cCcchh
Confidence            5668999999999999999999999999998 577766    8889999998875     3456788888877 478877


Q ss_pred             cCCCCCChHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCCCCCcccccccchHHHHHHHHHhhhhhhcCCCCccHHHHHH
Q 028370          102 TKGACGWTPLHTAAKERKKEAVRFLIENGAFLPDDINDSRFNPPLHYCPSLEWAYEEMMRFQRESFSAGETSYSSEKLNA  181 (210)
Q Consensus       102 ~~~~~g~tpL~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~  181 (210)
                      .... |.|+|++|+..|+.++|+.|+.-|+++  +++|.+|.|+|.+|+  .++..||+++|+.....+..-...+....
T Consensus       336 AsQ~-gQTALMLAVSHGr~d~vk~LLacgAdV--NiQDdDGSTALMCA~--EHGhkEivklLLA~p~cd~sLtD~DgSTA  410 (452)
T KOG0514|consen  336 ASQH-GQTALMLAVSHGRVDMVKALLACGADV--NIQDDDGSTALMCAA--EHGHKEIVKLLLAVPSCDISLTDVDGSTA  410 (452)
T ss_pred             hhhh-cchhhhhhhhcCcHHHHHHHHHccCCC--ccccCCccHHHhhhh--hhChHHHHHHHhccCcccceeecCCCchh
Confidence            5544 899999999999999999999999976  899999999999998  66779999999988777766666665555


Q ss_pred             HhHHH
Q 028370          182 LSRLL  186 (210)
Q Consensus       182 ~~~~~  186 (210)
                      +..++
T Consensus       411 l~IAl  415 (452)
T KOG0514|consen  411 LSIAL  415 (452)
T ss_pred             hhhHH
Confidence            54443

>PHA02989 ankyrin repeat protein; Provisional

Probab=99.82  E-value=2e-19  Score=151.72  Aligned_cols=136  Identities=18%  Similarity=0.277  Sum_probs=112.7

Q ss_pred             hhhhcccCCCCChHHHHHHHc---CCHHHHHHHHHCCCCc-cccccCCCCCCCcHHHHHHHC--CcHHHHHHHHHcCCCC
Q 028370           25 FRSVIDTDDRGWTPLHIGARK---GDIKLVKQLLDEGMDV-NVAAWGPKSKGVTPLHLAAQG--GHLEVMDVLLERGADI   98 (210)
Q Consensus        25 ~~~~~~~d~~g~t~L~~A~~~---g~~~~v~~Ll~~g~~~-~~~~~~~~~~g~t~L~~A~~~--~~~~~v~~Ll~~g~~~   98 (210)
                      ..+++.+|..|.||||.|+..   ++.+++++|+++|+++ +..    +..|.||||+|+..  ++.+++++|++.|+++
T Consensus        98 Gadin~~d~~g~tpL~~a~~~~~~~~~eiv~~Ll~~Gadin~~~----d~~g~tpLh~a~~~~~~~~~iv~~Ll~~Gadi  173 (494)
T PHA02989         98 GADINLKTFNGVSPIVCFIYNSNINNCDMLRFLLSKGINVNDVK----NSRGYNLLHMYLESFSVKKDVIKILLSFGVNL  173 (494)
T ss_pred             CCCCCCCCCCCCcHHHHHHHhcccCcHHHHHHHHHCCCCccccc----CCCCCCHHHHHHHhccCCHHHHHHHHHcCCCc
Confidence            466788999999999988766   6799999999999999 677    89999999998764  6889999999999999


Q ss_pred             Cc-ccCCCCCChHHHHHHhcC----CHHHHHHHHHcCCCCCC------------------------------------CC
Q 028370           99 DA-RTKGACGWTPLHTAAKER----KKEAVRFLIENGAFLPD------------------------------------DI  137 (210)
Q Consensus        99 ~~-~~~~~~g~tpL~~A~~~g----~~~~v~~Ll~~g~~~~~------------------------------------~~  137 (210)
                      +. .+..  |.||||.|+..+    +.+++++|+++|++++.                                    +.
T Consensus       174 ~~~~~~~--g~tpL~~a~~~~~~~~~~~iv~~Ll~~Ga~vn~~~~~~~t~l~~~~~~~~~~~~~~~~il~~l~~~advn~  251 (494)
T PHA02989        174 FEKTSLY--GLTPMNIYLRNDIDVISIKVIKYLIKKGVNIETNNNGSESVLESFLDNNKILSKKEFKVLNFILKYIKINK  251 (494)
T ss_pred             ccccccc--CCChHHHHHhcccccccHHHHHHHHhCCCCccccCCccccHHHHHHHhchhhcccchHHHHHHHhCCCCCC
Confidence            87 4444  999999997654    89999999999986531                                    34


Q ss_pred             CCCCCCCcccccccchHHHHHHHHHhhhhhh
Q 028370          138 NDSRFNPPLHYCPSLEWAYEEMMRFQRESFS  168 (210)
Q Consensus       138 ~~~~g~t~l~~a~~~~~~~~~~~~~l~~~~~  168 (210)
                      +|..|.||||+|+.  .+..+++++|.+...
T Consensus       252 ~d~~G~TpL~~Aa~--~~~~~~v~~LL~~Ga  280 (494)
T PHA02989        252 KDKKGFNPLLISAK--VDNYEAFNYLLKLGD  280 (494)
T ss_pred             CCCCCCCHHHHHHH--hcCHHHHHHHHHcCC
Confidence            56679999999984  345788888887643

>PF12796 Ank_2: Ankyrin repeats (3 copies); InterPro: IPR020683 This entry represents the ankyrin repeat-containing domain

Probab=99.82  E-value=3.3e-19  Score=116.23  Aligned_cols=88  Identities=47%  Similarity=0.783  Sum_probs=79.4

Q ss_pred             HHHHHHcCCHHHHHHHHHCCCCccccccCCCCCCCcHHHHHHHCCcHHHHHHHHHcCCCCCcccCCCCCChHHHHHHhcC
Q 028370           39 LHIGARKGDIKLVKQLLDEGMDVNVAAWGPKSKGVTPLHLAAQGGHLEVMDVLLERGADIDARTKGACGWTPLHTAAKER  118 (210)
Q Consensus        39 L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~~g~tpL~~A~~~g  118 (210)
                      ||+|++.|+.+++++|++.+.+++.        |.||||+|+..|+.+++++|+++|++++.++..  |.||||+|+..|
T Consensus         1 L~~A~~~~~~~~~~~ll~~~~~~~~--------~~~~l~~A~~~~~~~~~~~Ll~~g~~~~~~~~~--g~t~L~~A~~~~   70 (89)
T PF12796_consen    1 LHIAAQNGNLEILKFLLEKGADINL--------GNTALHYAAENGNLEIVKLLLENGADINSQDKN--GNTALHYAAENG   70 (89)
T ss_dssp             HHHHHHTTTHHHHHHHHHTTSTTTS--------SSBHHHHHHHTTTHHHHHHHHHTTTCTT-BSTT--SSBHHHHHHHTT
T ss_pred             CHHHHHcCCHHHHHHHHHCcCCCCC--------CCCHHHHHHHcCCHHHHHHHHHhcccccccCCC--CCCHHHHHHHcC
Confidence            7999999999999999998877642        779999999999999999999999999999877  999999999999


Q ss_pred             CHHHHHHHHHcCCCCCCCCC
Q 028370          119 KKEAVRFLIENGAFLPDDIN  138 (210)
Q Consensus       119 ~~~~v~~Ll~~g~~~~~~~~  138 (210)
                      +.+++++|+++|+++  +.+
T Consensus        71 ~~~~~~~Ll~~g~~~--~~~   88 (89)
T PF12796_consen   71 NLEIVKLLLEHGADV--NIR   88 (89)
T ss_dssp             HHHHHHHHHHTTT-T--TSS
T ss_pred             CHHHHHHHHHcCCCC--CCc
Confidence            999999999999966  544

These domains contain multiple repeats of a beta(2)-alpha(2) motif. The ankyrin repeat is one of the most common protein-protein interaction motifs in nature. Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].; PDB: 3AAA_C 3F6Q_A 2KBX_A 3IXE_A 3TWR_D 3TWV_A 3TWT_B 3TWQ_A 3TWS_A 3TWX_B ....

>PHA02795 ankyrin-like protein; Provisional

Probab=99.81  E-value=2.1e-19  Score=146.21  Aligned_cols=129  Identities=19%  Similarity=0.093  Sum_probs=92.2

Q ss_pred             ChHHHHHHHcCCHHHHHHHHHCCCCccccccC--CCCCCCcHHHHHHHCCcHHHHHHHHHcCCCCCcccCCCCCChHHHH
Q 028370           36 WTPLHIGARKGDIKLVKQLLDEGMDVNVAAWG--PKSKGVTPLHLAAQGGHLEVMDVLLERGADIDARTKGACGWTPLHT  113 (210)
Q Consensus        36 ~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~--~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~~g~tpL~~  113 (210)
                      .||+|.|+..++.+++++|+++|++.......  .+..+.+++|.|...++.+++++|+++|++++.++..  |.||||+
T Consensus       150 ~t~lh~A~~~~~~eIVk~Lls~Ga~~~n~~~~~l~~~~~~t~l~~a~~~~~~eIve~LIs~GADIN~kD~~--G~TpLh~  227 (437)
T PHA02795        150 LNAYFRGICKKESSVVEFILNCGIPDENDVKLDLYKIIQYTRGFLVDEPTVLEIYKLCIPYIEDINQLDAG--GRTLLYR  227 (437)
T ss_pred             CCHHHHHHHcCcHHHHHHHHhcCCcccccccchhhhhhccchhHHHHhcCHHHHHHHHHhCcCCcCcCCCC--CCCHHHH
Confidence            45555555555555555555555422111000  0123556777777777778888888888888888777  9999999


Q ss_pred             HHhcCCHHHHHHHHHcCCCCCCCCCCCCCCCcccccccchH------HHHHHHHHhhhhhh
Q 028370          114 AAKERKKEAVRFLIENGAFLPDDINDSRFNPPLHYCPSLEW------AYEEMMRFQRESFS  168 (210)
Q Consensus       114 A~~~g~~~~v~~Ll~~g~~~~~~~~~~~g~t~l~~a~~~~~------~~~~~~~~l~~~~~  168 (210)
                      |+..|+.+++++|+++|+++  +.++..|.||||+|+..+.      ...+++++|.+...
T Consensus       228 Aa~~g~~eiVelLL~~GAdI--N~~d~~G~TpLh~Aa~~g~~~~~~~~~~eIvelLL~~ga  286 (437)
T PHA02795        228 AIYAGYIDLVSWLLENGANV--NAVMSNGYTCLDVAVDRGSVIARRETHLKILEILLREPL  286 (437)
T ss_pred             HHHcCCHHHHHHHHHCCCCC--CCcCCCCCCHHHHHHHcCCcccccccHHHHHHHHHhCCC
Confidence            99999999999999999966  8899999999999996553      25688888876543

>PHA02917 ankyrin-like protein; Provisional

Probab=99.81  E-value=2.7e-19  Score=154.35  Aligned_cols=121  Identities=19%  Similarity=0.276  Sum_probs=96.4

Q ss_pred             HHHHHHcCCHHHHHHHHHCCCCccccccCCCCCCCcHHHHHH--HCCcHHHHHHHHHcCCCCCcccCC-CCC--------
Q 028370           39 LHIGARKGDIKLVKQLLDEGMDVNVAAWGPKSKGVTPLHLAA--QGGHLEVMDVLLERGADIDARTKG-ACG--------  107 (210)
Q Consensus        39 L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~g~t~L~~A~--~~~~~~~v~~Ll~~g~~~~~~~~~-~~g--------  107 (210)
                      +++|+.+|+.+++++|+++|++++..    |..|+||||.|+  ..|+.+++++|+++|++++..+.+ ..|        
T Consensus       107 ~~~a~~~~~~e~vk~Ll~~Gadin~~----d~~g~T~L~~~~a~~~~~~eivklLi~~Ga~vn~~d~~~~~g~~~~~~~~  182 (661)
T PHA02917        107 SYMKSKNVDVDLIKVLVEHGFDLSVK----CENHRSVIENYVMTDDPVPEIIDLFIENGCSVLYEDEDDEYGYAYDDYQP  182 (661)
T ss_pred             HHHHhhcCCHHHHHHHHHcCCCCCcc----CCCCccHHHHHHHccCCCHHHHHHHHHcCCCccccccccccccccccccc
Confidence            34444555678889999999999988    889999999553  478999999999999999865432 113        


Q ss_pred             ---ChHHHHHHh-----------cCCHHHHHHHHHcCCCCCCCCCCCCCCCcccccccchHHHHHHHHHhhh
Q 028370          108 ---WTPLHTAAK-----------ERKKEAVRFLIENGAFLPDDINDSRFNPPLHYCPSLEWAYEEMMRFQRE  165 (210)
Q Consensus       108 ---~tpL~~A~~-----------~g~~~~v~~Ll~~g~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~~~l~~  165 (210)
                         .||||+|+.           .++.+++++|+++|+++  +.+|..|.||||+|+..+....+++++|..
T Consensus       183 ~~~~t~L~~a~~~~~~~~~~~~~~~~~eiv~~Li~~Gadv--n~~d~~G~TpLh~A~~~g~~~~eivk~Li~  252 (661)
T PHA02917        183 RNCGTVLHLYIISHLYSESDTRAYVRPEVVKCLINHGIKP--SSIDKNYCTALQYYIKSSHIDIDIVKLLMK  252 (661)
T ss_pred             cccccHHHHHHhhcccccccccccCcHHHHHHHHHCCCCc--ccCCCCCCcHHHHHHHcCCCcHHHHHHHHh
Confidence               599999986           45889999999999966  889999999999999766544578888854

>PHA02876 ankyrin repeat protein; Provisional

Probab=99.81  E-value=2.8e-19  Score=156.21  Aligned_cols=119  Identities=29%  Similarity=0.421  Sum_probs=91.4

Q ss_pred             hhhhcccCCCCChHHHHHHHcCCHHHHHHHHHCCCCccccccCCCCCCCcHHHHHHHCCc-HHHHHHHHHcCCCCCcccC
Q 028370           25 FRSVIDTDDRGWTPLHIGARKGDIKLVKQLLDEGMDVNVAAWGPKSKGVTPLHLAAQGGH-LEVMDVLLERGADIDARTK  103 (210)
Q Consensus        25 ~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~g~t~L~~A~~~~~-~~~v~~Ll~~g~~~~~~~~  103 (210)
                      ..+++.+|..|.||||+|+..|+.++++.|++.|++++..    +..|.||||+|+..++ ..++++|++.|++++.++.
T Consensus       365 gadin~~d~~G~TpLh~Aa~~~~~~iv~~Ll~~gad~~~~----~~~g~T~Lh~A~~~~~~~~~vk~Ll~~gadin~~d~  440 (682)
T PHA02876        365 GANVNARDYCDKTPIHYAAVRNNVVIINTLLDYGADIEAL----SQKIGTALHFALCGTNPYMSVKTLIDRGANVNSKNK  440 (682)
T ss_pred             CCCCccCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCcccc----CCCCCchHHHHHHcCCHHHHHHHHHhCCCCCCcCCC
Confidence            3456667777888888888888888888888888887776    6777788888876554 4567788888888887777


Q ss_pred             CCCCChHHHHHHhcC-CHHHHHHHHHcCCCCCCCCCCCCCCCccccccc
Q 028370          104 GACGWTPLHTAAKER-KKEAVRFLIENGAFLPDDINDSRFNPPLHYCPS  151 (210)
Q Consensus       104 ~~~g~tpL~~A~~~g-~~~~v~~Ll~~g~~~~~~~~~~~g~t~l~~a~~  151 (210)
                      +  |.||||+|+..| +.+++++|++.|+++  +..|..|.||+++|+.
T Consensus       441 ~--G~TpLh~Aa~~~~~~~iv~lLl~~Gad~--n~~d~~g~tpl~~a~~  485 (682)
T PHA02876        441 D--LSTPLHYACKKNCKLDVIEMLLDNGADV--NAINIQNQYPLLIALE  485 (682)
T ss_pred             C--CChHHHHHHHhCCcHHHHHHHHHCCCCC--CCCCCCCCCHHHHHHH
Confidence            6  888888888766 578888888888855  7788888888888774

>KOG0510 consensus Ankyrin repeat protein [General function prediction only]

Probab=99.80  E-value=1.8e-19  Score=151.66  Aligned_cols=133  Identities=31%  Similarity=0.432  Sum_probs=109.3

Q ss_pred             hhhcccCCCCChHHHHHHHcCCHHHHHHHHHCCCCccccccCCCCCCCcHHHHHHHCCcHHHHHHHHH-cCC-CCCcccC
Q 028370           26 RSVIDTDDRGWTPLHIGARKGDIKLVKQLLDEGMDVNVAAWGPKSKGVTPLHLAAQGGHLEVMDVLLE-RGA-DIDARTK  103 (210)
Q Consensus        26 ~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~-~g~-~~~~~~~  103 (210)
                      +.++..|++|.||||+|++.|..+++..|+..|++++.+    +.++.||||.|+..|+...|+.|++ .+. ..+..|.
T Consensus       264 elv~~~d~dg~tpLH~a~r~G~~~svd~Ll~~Ga~I~~k----n~d~~spLH~AA~yg~~ntv~rLL~~~~~rllne~D~  339 (929)
T KOG0510|consen  264 ELVNDEDNDGCTPLHYAARQGGPESVDNLLGFGASINSK----NKDEESPLHFAAIYGRINTVERLLQESDTRLLNESDL  339 (929)
T ss_pred             HHhhcccccCCchHHHHHHcCChhHHHHHHHcCCccccc----CCCCCCchHHHHHcccHHHHHHHHhCcCccccccccc
Confidence            346779999999999999999999999999999999988    8999999999999999999999998 443 3444444


Q ss_pred             CCCCChHHHHHHhcCCHHHHHHHHHcCCCCC-CCCCCCCCCCcccccccchHHHHHHHHHhhhh
Q 028370          104 GACGWTPLHTAAKERKKEAVRFLIENGAFLP-DDINDSRFNPPLHYCPSLEWAYEEMMRFQRES  166 (210)
Q Consensus       104 ~~~g~tpL~~A~~~g~~~~v~~Ll~~g~~~~-~~~~~~~g~t~l~~a~~~~~~~~~~~~~l~~~  166 (210)
                      .  |.||||.|+.+|+-.++++|+..|+... ....|.+|.||||.|+..  +....++.+...
T Consensus       340 ~--g~tpLHlaa~~gH~~v~qlLl~~GA~~~~~~e~D~dg~TaLH~Aa~~--g~~~av~~Li~~  399 (929)
T KOG0510|consen  340 H--GMTPLHLAAKSGHDRVVQLLLNKGALFLNMSEADSDGNTALHLAAKY--GNTSAVQKLISH  399 (929)
T ss_pred             c--CCCchhhhhhcCHHHHHHHHHhcChhhhcccccccCCchhhhHHHHh--ccHHHHHHHHHc
Confidence            4  9999999999999999999999999552 114489999999999944  345566555544

>PHA02730 ankyrin-like protein; Provisional

Probab=99.80  E-value=6.3e-19  Score=149.77  Aligned_cols=134  Identities=16%  Similarity=0.136  Sum_probs=110.4

Q ss_pred             hhhhcccCCCCChHHHHHHHcCC----HHHHHHHHHCCC--CccccccCCCCCCCcHHHH---HHHCC---------cHH
Q 028370           25 FRSVIDTDDRGWTPLHIGARKGD----IKLVKQLLDEGM--DVNVAAWGPKSKGVTPLHL---AAQGG---------HLE   86 (210)
Q Consensus        25 ~~~~~~~d~~g~t~L~~A~~~g~----~~~v~~Ll~~g~--~~~~~~~~~~~~g~t~L~~---A~~~~---------~~~   86 (210)
                      .++++.. ..|.||||.|+..++    .+++++|+++|+  +++..    +..|.||||.   |...+         ..+
T Consensus       369 GAdIN~k-~~G~TpLH~Aa~~nnn~i~~eIvelLIs~Ga~~dIN~k----d~~G~T~Lh~~i~a~~~n~~~~~~e~~~~~  443 (672)
T PHA02730        369 GATMDKT-TDNNYPLHDYFVNNNNIVDVNVVRFIVENNGHMAINHV----SNNGRLCMYGLILSRFNNCGYHCYETILID  443 (672)
T ss_pred             CCCCCcC-CCCCcHHHHHHHHcCCcchHHHHHHHHHcCCCcccccc----ccCCCchHhHHHHHHhccccccccchhHHH
Confidence            4556654 789999999998875    899999999997  57766    8899999984   33232         235


Q ss_pred             HHHHHHHcCCCCCcccCCCCCChHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCC-CCCCcccccccchHHHHHHHHHhhh
Q 028370           87 VMDVLLERGADIDARTKGACGWTPLHTAAKERKKEAVRFLIENGAFLPDDINDS-RFNPPLHYCPSLEWAYEEMMRFQRE  165 (210)
Q Consensus        87 ~v~~Ll~~g~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~-~g~t~l~~a~~~~~~~~~~~~~l~~  165 (210)
                      ++++|+.+|++++.++..  |.||||+|+..++.+++++|+++|+++  +..+. .|+||+++|+....+..+++++|.+
T Consensus       444 ivk~LIs~GADINakD~~--G~TPLh~Aa~~~~~eive~LI~~GAdI--N~~d~~~g~TaL~~Aa~~~~~~~eIv~~LLs  519 (672)
T PHA02730        444 VFDILSKYMDDIDMIDNE--NKTLLYYAVDVNNIQFARRLLEYGASV--NTTSRSIINTAIQKSSYRRENKTKLVDLLLS  519 (672)
T ss_pred             HHHHHHhcccchhccCCC--CCCHHHHHHHhCCHHHHHHHHHCCCCC--CCCCCcCCcCHHHHHHHhhcCcHHHHHHHHH
Confidence            799999999999999888  999999999999999999999999976  77786 5899999998543445778888776


Q ss_pred             hh
Q 028370          166 SF  167 (210)
Q Consensus       166 ~~  167 (210)
                      ..
T Consensus       520 ~g  521 (672)
T PHA02730        520 YH  521 (672)
T ss_pred             cC
Confidence            54

>KOG4177 consensus Ankyrin [Cell wall/membrane/envelope biogenesis]

Probab=99.80  E-value=2e-19  Score=158.60  Aligned_cols=127  Identities=34%  Similarity=0.630  Sum_probs=105.9

Q ss_pred             CCCChHHHHHHHcCCHHHHHHHHHCCCCccccccCCCCCCCcHHHHHHHCCcHHHHHHHHHcCCCCCcccCCCCCChHHH
Q 028370           33 DRGWTPLHIGARKGDIKLVKQLLDEGMDVNVAAWGPKSKGVTPLHLAAQGGHLEVMDVLLERGADIDARTKGACGWTPLH  112 (210)
Q Consensus        33 ~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~~g~tpL~  112 (210)
                      +.|.+++|.|...+...+++.++++|++++.+    +..|.||||.|+..|+..+|++|+++|++++.++..  |.||||
T Consensus       505 ~~~l~~lhla~~~~~v~~~~~l~~~ga~v~~~----~~r~~TpLh~A~~~g~v~~VkfLLe~gAdv~ak~~~--G~TPLH  578 (1143)
T KOG4177|consen  505 KKGLTPLHLAADEDTVKVAKILLEHGANVDLR----TGRGYTPLHVAVHYGNVDLVKFLLEHGADVNAKDKL--GYTPLH  578 (1143)
T ss_pred             hhccchhhhhhhhhhHHHHHHHhhcCCceehh----cccccchHHHHHhcCCchHHHHhhhCCccccccCCC--CCChhh
Confidence            45666666666666666666666667766666    788999999999999999999999999999999866  999999


Q ss_pred             HHHhcCCHHHHHHHHHcCCCCCCCCCCCCCCCcccccccchHHHHHHHHHhhhhhhc
Q 028370          113 TAAKERKKEAVRFLIENGAFLPDDINDSRFNPPLHYCPSLEWAYEEMMRFQRESFSA  169 (210)
Q Consensus       113 ~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~~~l~~~~~~  169 (210)
                      .||..|+.+|+.+|+++|+++  +..+.+|.|||++|+..  ++..+++.+......
T Consensus       579 ~Aa~~G~~~i~~LLlk~GA~v--na~d~~g~TpL~iA~~l--g~~~~~k~l~~~~~~  631 (1143)
T KOG4177|consen  579 QAAQQGHNDIAELLLKHGASV--NAADLDGFTPLHIAVRL--GYLSVVKLLKVVTAT  631 (1143)
T ss_pred             HHHHcChHHHHHHHHHcCCCC--CcccccCcchhHHHHHh--cccchhhHHHhccCc
Confidence            999999999999999999965  99999999999999954  457777777766554

>KOG0512 consensus Fetal globin-inducing factor (contains ankyrin repeats) [Transcription]

Probab=99.79  E-value=1.5e-18  Score=121.85  Aligned_cols=140  Identities=30%  Similarity=0.432  Sum_probs=112.7

Q ss_pred             HHHHHHHcCCHHHHHHHHHCCCC-ccccccCCCCCCCcHHHHHHHCCcHHHHHHHHHcCCCCCcccCCCCCChHHHHHHh
Q 028370           38 PLHIGARKGDIKLVKQLLDEGMD-VNVAAWGPKSKGVTPLHLAAQGGHLEVMDVLLERGADIDARTKGACGWTPLHTAAK  116 (210)
Q Consensus        38 ~L~~A~~~g~~~~v~~Ll~~g~~-~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~~g~tpL~~A~~  116 (210)
                      -+.+|+..+....|+.|++..++ +|.+    |.+|.||||-|+..|+.+||+.|+..|++++.++..  |+||||-||.
T Consensus        66 l~lwaae~nrl~eV~~lL~e~an~vNtr----D~D~YTpLHRAaYn~h~div~~ll~~gAn~~a~T~~--GWTPLhSAck  139 (228)
T KOG0512|consen   66 LLLWAAEKNRLTEVQRLLSEKANHVNTR----DEDEYTPLHRAAYNGHLDIVHELLLSGANKEAKTNE--GWTPLHSACK  139 (228)
T ss_pred             HHHHHHhhccHHHHHHHHHhcccccccc----ccccccHHHHHHhcCchHHHHHHHHccCCccccccc--Cccchhhhhc
Confidence            46889999999999999998775 4556    999999999999999999999999999999999888  9999999999


Q ss_pred             cCCHHHHHHHHHcCCCCCCCCCCCCCCCcccccccchHHHHHHHHHhhhh--hhcCCCCccHHHHHHHhHHH
Q 028370          117 ERKKEAVRFLIENGAFLPDDINDSRFNPPLHYCPSLEWAYEEMMRFQRES--FSAGETSYSSEKLNALSRLL  186 (210)
Q Consensus       117 ~g~~~~v~~Ll~~g~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~~~l~~~--~~~~~~~~~~~~~~~~~~~~  186 (210)
                      -.+.+|+.+|+++|+++  +.......||||.|+.+.+. ...+.+|...  ...+......+....++|..
T Consensus       140 WnN~~va~~LLqhgaDV--nA~t~g~ltpLhlaa~~rn~-r~t~~~Ll~dryi~pg~~nn~eeta~~iARRT  208 (228)
T KOG0512|consen  140 WNNFEVAGRLLQHGADV--NAQTKGLLTPLHLAAGNRNS-RDTLELLLHDRYIHPGLKNNLEETAFDIARRT  208 (228)
T ss_pred             ccchhHHHHHHhccCcc--cccccccchhhHHhhcccch-HHHHHHHhhccccChhhhcCccchHHHHHHHh
Confidence            99999999999999977  77888889999999865533 3333333332  22333344455555566644

>PHA02876 ankyrin repeat protein; Provisional

Probab=99.79  E-value=2.6e-18  Score=150.15  Aligned_cols=115  Identities=31%  Similarity=0.436  Sum_probs=56.8

Q ss_pred             hcccCCCCChHHHHHHHcC-CHHHHHHHHHCCCCccccccCCCCCCCcHHHHHHHC-CcHHHHHHHHHcCCCCCcccCCC
Q 028370           28 VIDTDDRGWTPLHIGARKG-DIKLVKQLLDEGMDVNVAAWGPKSKGVTPLHLAAQG-GHLEVMDVLLERGADIDARTKGA  105 (210)
Q Consensus        28 ~~~~d~~g~t~L~~A~~~g-~~~~v~~Ll~~g~~~~~~~~~~~~~g~t~L~~A~~~-~~~~~v~~Ll~~g~~~~~~~~~~  105 (210)
                      ++.+|..|.||||+|+..| +.++++.|+..|++++..    +..|.||||+|+.. ++.+++++|++.|++++.++.. 
T Consensus       300 in~~d~~g~TpLh~Aa~~g~~~~~v~~Ll~~gadin~~----d~~g~TpLh~A~~~~~~~~iv~lLl~~gadin~~d~~-  374 (682)
T PHA02876        300 VNAKNIKGETPLYLMAKNGYDTENIRTLIMLGADVNAA----DRLYITPLHQASTLDRNKDIVITLLELGANVNARDYC-  374 (682)
T ss_pred             CCCcCCCCCCHHHHHHHhCCCHHHHHHHHHcCCCCCCc----ccCCCcHHHHHHHhCCcHHHHHHHHHcCCCCccCCCC-
Confidence            4445555666666666555 355555555555555544    44455555555442 2344445555555555544444 


Q ss_pred             CCChHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCCCCCcccccc
Q 028370          106 CGWTPLHTAAKERKKEAVRFLIENGAFLPDDINDSRFNPPLHYCP  150 (210)
Q Consensus       106 ~g~tpL~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~g~t~l~~a~  150 (210)
                       |.||||+|+..|+.+++++|+++|+++  +..+..|.||||+|+
T Consensus       375 -G~TpLh~Aa~~~~~~iv~~Ll~~gad~--~~~~~~g~T~Lh~A~  416 (682)
T PHA02876        375 -DKTPIHYAAVRNNVVIINTLLDYGADI--EALSQKIGTALHFAL  416 (682)
T ss_pred             -CCCHHHHHHHcCCHHHHHHHHHCCCCc--cccCCCCCchHHHHH
Confidence             555555555555555555555444432  333444444444443

>cd00204 ANK ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins

Probab=99.79  E-value=4e-18  Score=117.07  Aligned_cols=124  Identities=43%  Similarity=0.725  Sum_probs=109.2

Q ss_pred             ccCCCCChHHHHHHHcCCHHHHHHHHHCCCCccccccCCCCCCCcHHHHHHHCCcHHHHHHHHHcCCCCCcccCCCCCCh
Q 028370           30 DTDDRGWTPLHIGARKGDIKLVKQLLDEGMDVNVAAWGPKSKGVTPLHLAAQGGHLEVMDVLLERGADIDARTKGACGWT  109 (210)
Q Consensus        30 ~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~~g~t  109 (210)
                      .+|..|.||||.|+..++.++++.|++.+.+.+..    +..|.+|+|.|+..+..+++++|+..++.++..+..  |.|
T Consensus         2 ~~~~~g~t~l~~a~~~~~~~~i~~li~~~~~~~~~----~~~g~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~--~~~   75 (126)
T cd00204           2 ARDEDGRTPLHLAASNGHLEVVKLLLENGADVNAK----DNDGRTPLHLAAKNGHLEIVKLLLEKGADVNARDKD--GNT   75 (126)
T ss_pred             CcCcCCCCHHHHHHHcCcHHHHHHHHHcCCCCCcc----CCCCCcHHHHHHHcCCHHHHHHHHHcCCCccccCCC--CCC
Confidence            35788999999999999999999999999987666    889999999999999999999999999888877755  899


Q ss_pred             HHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCCCCCcccccccchHHHHHHHHHh
Q 028370          110 PLHTAAKERKKEAVRFLIENGAFLPDDINDSRFNPPLHYCPSLEWAYEEMMRFQ  163 (210)
Q Consensus       110 pL~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~~~l  163 (210)
                      |+|+|+..++.+++++|++.+.++  ...+..|.||+++|...  ...+++++|
T Consensus        76 ~l~~a~~~~~~~~~~~L~~~~~~~--~~~~~~~~~~l~~~~~~--~~~~~~~~L  125 (126)
T cd00204          76 PLHLAARNGNLDVVKLLLKHGADV--NARDKDGRTPLHLAAKN--GHLEVVKLL  125 (126)
T ss_pred             HHHHHHHcCcHHHHHHHHHcCCCC--cccCCCCCCHHHHHHhc--CCHHHHHHh
Confidence            999999999999999999999755  77889999999999854  345555544

The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other types of domains. The structural repeat unit contains two antiparallel helices and a beta-hairpin, repeats are stacked in a superhelical arrangement; this alignment contains 4 consecutive repeats.

>PHA02736 Viral ankyrin protein; Provisional

Probab=99.78  E-value=1e-18  Score=125.43  Aligned_cols=99  Identities=23%  Similarity=0.306  Sum_probs=90.1

Q ss_pred             cccCCCCChHHHHHHHcCCH---HHHHHHHHCCCCccccccCCC-CCCCcHHHHHHHCCcHHHHHHHHH-cCCCCCcccC
Q 028370           29 IDTDDRGWTPLHIGARKGDI---KLVKQLLDEGMDVNVAAWGPK-SKGVTPLHLAAQGGHLEVMDVLLE-RGADIDARTK  103 (210)
Q Consensus        29 ~~~d~~g~t~L~~A~~~g~~---~~v~~Ll~~g~~~~~~~~~~~-~~g~t~L~~A~~~~~~~~v~~Ll~-~g~~~~~~~~  103 (210)
                      ..+|..|.||||+|+..|+.   +++++|++.|++++..    + ..|.||||+|+..++.+++++|+. .|++++..+.
T Consensus        49 ~~~d~~g~t~Lh~a~~~~~~~~~e~v~~Ll~~gadin~~----~~~~g~T~Lh~A~~~~~~~i~~~Ll~~~g~d~n~~~~  124 (154)
T PHA02736         49 LEYNRHGKQCVHIVSNPDKADPQEKLKLLMEWGADINGK----ERVFGNTPLHIAVYTQNYELATWLCNQPGVNMEILNY  124 (154)
T ss_pred             HHhcCCCCEEEEeecccCchhHHHHHHHHHHcCCCcccc----CCCCCCcHHHHHHHhCCHHHHHHHHhCCCCCCccccC
Confidence            34688999999999999987   4688999999999987    6 489999999999999999999998 5899998887


Q ss_pred             CCCCChHHHHHHhcCCHHHHHHHHHcCCCC
Q 028370          104 GACGWTPLHTAAKERKKEAVRFLIENGAFL  133 (210)
Q Consensus       104 ~~~g~tpL~~A~~~g~~~~v~~Ll~~g~~~  133 (210)
                      .  |.||||+|+..|+.+++++|+++|++.
T Consensus       125 ~--g~tpL~~A~~~~~~~i~~~Ll~~ga~~  152 (154)
T PHA02736        125 A--FKTPYYVACERHDAKMMNILRAKGAQC  152 (154)
T ss_pred             C--CCCHHHHHHHcCCHHHHHHHHHcCCCC
Confidence            7  999999999999999999999999854

>KOG0510 consensus Ankyrin repeat protein [General function prediction only]

Probab=99.78  E-value=3e-18  Score=144.42  Aligned_cols=155  Identities=25%  Similarity=0.321  Sum_probs=122.3

Q ss_pred             cchhHHHHHHhhHHHhhh------------hcccCCCCChHHHHHHHcCCHHHHHHHHHCCCCccccc-----------c
Q 028370           10 LGPFTLQRKASRKRFFRS------------VIDTDDRGWTPLHIGARKGDIKLVKQLLDEGMDVNVAA-----------W   66 (210)
Q Consensus        10 ~~~~~~~~~~~~~~~~~~------------~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~-----------~   66 (210)
                      +.|+..+.+.....+.+-            ++.-|..|.||||.|+..|+.++++.+++.|.......           .
T Consensus       188 ~~~iH~aa~s~s~e~mEi~l~~~g~~r~~~in~~~n~~~~pLhlAve~g~~e~lk~~L~n~~~~a~~~~~~~~q~kelv~  267 (929)
T KOG0510|consen  188 NFPIHEAARSGSKECMEIFLPEHGYERQTHINFDNNEKATPLHLAVEGGDIEMLKMCLQNGKKIADVQLDAMQQEKELVN  267 (929)
T ss_pred             CchHHHHHHhcchhhhhhhhccccchhhcccccccCCCCcchhhhhhcCCHHHHHHHHhCccccchhhhHHHHHHHHHhh
Confidence            345666666666665443            34467789999999999999999999998875332211           2


Q ss_pred             CCCCCCCcHHHHHHHCCcHHHHHHHHHcCCCCCcccCCCCCChHHHHHHhcCCHHHHHHHHH-cCCCCCCCCCCCCCCCc
Q 028370           67 GPKSKGVTPLHLAAQGGHLEVMDVLLERGADIDARTKGACGWTPLHTAAKERKKEAVRFLIE-NGAFLPDDINDSRFNPP  145 (210)
Q Consensus        67 ~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~-~g~~~~~~~~~~~g~t~  145 (210)
                      ..|.+|.||||+|++.|+.+.++.|+..|++++.++.+  +.||||.|+..|++++|+-|++ .+.. ..+..|..|.||
T Consensus       268 ~~d~dg~tpLH~a~r~G~~~svd~Ll~~Ga~I~~kn~d--~~spLH~AA~yg~~ntv~rLL~~~~~r-llne~D~~g~tp  344 (929)
T KOG0510|consen  268 DEDNDGCTPLHYAARQGGPESVDNLLGFGASINSKNKD--EESPLHFAAIYGRINTVERLLQESDTR-LLNESDLHGMTP  344 (929)
T ss_pred             cccccCCchHHHHHHcCChhHHHHHHHcCCcccccCCC--CCCchHHHHHcccHHHHHHHHhCcCcc-ccccccccCCCc
Confidence            34788999999999999999999999999999999877  8999999999999999999999 4432 357788899999


Q ss_pred             ccccccchHHHHHHHHHhhhhhhc
Q 028370          146 LHYCPSLEWAYEEMMRFQRESFSA  169 (210)
Q Consensus       146 l~~a~~~~~~~~~~~~~l~~~~~~  169 (210)
                      ||.|+  +.+...++++|......
T Consensus       345 LHlaa--~~gH~~v~qlLl~~GA~  366 (929)
T KOG0510|consen  345 LHLAA--KSGHDRVVQLLLNKGAL  366 (929)
T ss_pred             hhhhh--hcCHHHHHHHHHhcChh
Confidence            99999  55668888888776444

>PHA02730 ankyrin-like protein; Provisional

Probab=99.77  E-value=4.6e-18  Score=144.58  Aligned_cols=132  Identities=17%  Similarity=0.168  Sum_probs=108.5

Q ss_pred             ccCCCCChHHHHHHHcC---CHHHHHHHHHCCCCccccccCCCCCCCcHHHHHHHCC--cHHHHHHHHHcCCCC--Cccc
Q 028370           30 DTDDRGWTPLHIGARKG---DIKLVKQLLDEGMDVNVAAWGPKSKGVTPLHLAAQGG--HLEVMDVLLERGADI--DART  102 (210)
Q Consensus        30 ~~d~~g~t~L~~A~~~g---~~~~v~~Ll~~g~~~~~~~~~~~~~g~t~L~~A~~~~--~~~~v~~Ll~~g~~~--~~~~  102 (210)
                      .+|..|+||||+|+.+|   +.+++++|+++|++++..    |..|.||||+|+..+  +.+++++|++.|++.  +..+
T Consensus        36 ~kd~~G~TaLh~A~~~~~~~~~eivklLLs~GAdin~k----D~~G~TPLh~Aa~~~~~~~eIv~~Ll~~~~~~~~~~~~  111 (672)
T PHA02730         36 HIDRRGNNALHCYVSNKCDTDIKIVRLLLSRGVERLCR----NNEGLTPLGVYSKRKYVKSQIVHLLISSYSNASNELTS  111 (672)
T ss_pred             hcCCCCCcHHHHHHHcCCcCcHHHHHHHHhCCCCCccc----CCCCCChHHHHHHcCCCcHHHHHHHHhcCCCCCccccc
Confidence            78899999999999997   599999999999999988    999999999999977  799999999997655  4444


Q ss_pred             CCCCCChHHHHHHh--cCCHHHHHHHHH-cCCCCCCC--CCC-CCCCCcccccccchHHHHHHHHHhhhhhhc
Q 028370          103 KGACGWTPLHTAAK--ERKKEAVRFLIE-NGAFLPDD--IND-SRFNPPLHYCPSLEWAYEEMMRFQRESFSA  169 (210)
Q Consensus       103 ~~~~g~tpL~~A~~--~g~~~~v~~Ll~-~g~~~~~~--~~~-~~g~t~l~~a~~~~~~~~~~~~~l~~~~~~  169 (210)
                      .-  +.+||+.++.  .++.+++++|+. .+.++...  ..+ ..|-+|+++++.  .+..+++++|.+....
T Consensus       112 ~~--~d~~l~~y~~s~n~~~~~vk~Li~~~~~~~~~~~~~~~~~~~~~~~yl~~~--~~~~eIvklLi~~g~~  180 (672)
T PHA02730        112 NI--NDFDLYSYMSSDNIDLRLLKYLIVDKRIRPSKNTNYYIHCLGLVDIYVTTP--NPRPEVLLWLLKSECY  180 (672)
T ss_pred             cc--CCchHHHHHHhcCCcHHHHHHHHHhcCCChhhhhhhhccccchhhhhHhcC--CCchHHHHHHHHcCCc
Confidence            33  7789999888  888999999997 55654322  111 378899999984  4568999999988444

>PHA02741 hypothetical protein; Provisional

Probab=99.77  E-value=8.6e-18  Score=122.44  Aligned_cols=101  Identities=27%  Similarity=0.369  Sum_probs=92.8

Q ss_pred             hhhcccCCCCChHHHHHHHcCC----HHHHHHHHHCCCCccccccCCCC-CCCcHHHHHHHCCcHHHHHHHHH-cCCCCC
Q 028370           26 RSVIDTDDRGWTPLHIGARKGD----IKLVKQLLDEGMDVNVAAWGPKS-KGVTPLHLAAQGGHLEVMDVLLE-RGADID   99 (210)
Q Consensus        26 ~~~~~~d~~g~t~L~~A~~~g~----~~~v~~Ll~~g~~~~~~~~~~~~-~g~t~L~~A~~~~~~~~v~~Ll~-~g~~~~   99 (210)
                      .+++.+|..|+||||+|+..|+    .+++++|++.|++++..    +. .|.||||+|+..++.+++++|+. .|++++
T Consensus        51 a~in~~d~~g~T~Lh~A~~~g~~~~~~~ii~~Ll~~gadin~~----~~~~g~TpLh~A~~~~~~~iv~~Ll~~~g~~~~  126 (169)
T PHA02741         51 AALNATDDAGQMCIHIAAEKHEAQLAAEIIDHLIELGADINAQ----EMLEGDTALHLAAHRRDHDLAEWLCCQPGIDLH  126 (169)
T ss_pred             hhhhccCCCCCcHHHHHHHcCChHHHHHHHHHHHHcCCCCCCC----CcCCCCCHHHHHHHcCCHHHHHHHHhCCCCCCC
Confidence            5678899999999999999998    58999999999999887    64 89999999999999999999997 599999


Q ss_pred             cccCCCCCChHHHHHHhcCCHHHHHHHHHcCCC
Q 028370          100 ARTKGACGWTPLHTAAKERKKEAVRFLIENGAF  132 (210)
Q Consensus       100 ~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~g~~  132 (210)
                      ..+.+  |.||||+|+..++.+++++|++.++.
T Consensus       127 ~~n~~--g~tpL~~A~~~~~~~iv~~L~~~~~~  157 (169)
T PHA02741        127 FCNAD--NKSPFELAIDNEDVAMMQILREIVAT  157 (169)
T ss_pred             cCCCC--CCCHHHHHHHCCCHHHHHHHHHHHHH
Confidence            88877  99999999999999999999998873

>PHA02917 ankyrin-like protein; Provisional

Probab=99.77  E-value=4.6e-18  Score=146.79  Aligned_cols=131  Identities=17%  Similarity=0.136  Sum_probs=108.4

Q ss_pred             hcccCCCCChHHHHHHHc---CCHHHHHHHHHCCCCccccccCCCCCCCcHHHHHHHCCcH----HHHHHHHHcCCCCCc
Q 028370           28 VIDTDDRGWTPLHIGARK---GDIKLVKQLLDEGMDVNVAAWGPKSKGVTPLHLAAQGGHL----EVMDVLLERGADIDA  100 (210)
Q Consensus        28 ~~~~d~~g~t~L~~A~~~---g~~~~v~~Ll~~g~~~~~~~~~~~~~g~t~L~~A~~~~~~----~~v~~Ll~~g~~~~~  100 (210)
                      .+.+|..|+||||+|+..   |+.++++.|++.|++++..    +..|.||||+|+..|+.    ++++.|++.+...+.
T Consensus        25 ~~~~d~~g~t~Lh~a~~~~~~~~~~~v~~Ll~~ga~v~~~----~~~g~TpL~~Aa~~g~~~v~~~~~~~Ll~~~~~~n~  100 (661)
T PHA02917         25 NDTRNQFKNNALHAYLFNEHCNNVEVVKLLLDSGTNPLHK----NWRQLTPLEEYTNSRHVKVNKDIAMALLEATGYSNI  100 (661)
T ss_pred             ccccCCCCCcHHHHHHHhhhcCcHHHHHHHHHCCCCcccc----CCCCCCHHHHHHHcCChhHHHHHHHHHHhccCCCCC
Confidence            356799999999998665   8899999999999999987    89999999999999985    456788876544444


Q ss_pred             ccCCCCCChHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCCCCCcccccccchHHHHHHHHHhhhhhh
Q 028370          101 RTKGACGWTPLHTAAKERKKEAVRFLIENGAFLPDDINDSRFNPPLHYCPSLEWAYEEMMRFQRESFS  168 (210)
Q Consensus       101 ~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~~~l~~~~~  168 (210)
                      .+    ..+++++|+..|+.+++++|+++|+++  +.+|..|.|||++++....+..+++++|.+...
T Consensus       101 ~~----~~~~~~~a~~~~~~e~vk~Ll~~Gadi--n~~d~~g~T~L~~~~a~~~~~~eivklLi~~Ga  162 (661)
T PHA02917        101 ND----FNIFSYMKSKNVDVDLIKVLVEHGFDL--SVKCENHRSVIENYVMTDDPVPEIIDLFIENGC  162 (661)
T ss_pred             CC----cchHHHHHhhcCCHHHHHHHHHcCCCC--CccCCCCccHHHHHHHccCCCHHHHHHHHHcCC
Confidence            32    347788899999999999999999966  899999999999665435567899999988754

>KOG0514 consensus Ankyrin repeat protein [General function prediction only]

Probab=99.76  E-value=5.5e-18  Score=131.43  Aligned_cols=151  Identities=25%  Similarity=0.334  Sum_probs=125.2

Q ss_pred             chhHHHHHHhhHHHhhhhcccCCCCChHHHHHHHc-----CCHHHHHHHHHCCCCccccccCCCCCCCcHHHHHHHCCcH
Q 028370           11 GPFTLQRKASRKRFFRSVIDTDDRGWTPLHIGARK-----GDIKLVKQLLDEGMDVNVAAWGPKSKGVTPLHLAAQGGHL   85 (210)
Q Consensus        11 ~~~~~~~~~~~~~~~~~~~~~d~~g~t~L~~A~~~-----g~~~~v~~Ll~~g~~~~~~~~~~~~~g~t~L~~A~~~~~~   85 (210)
                      ++|..+...+.-...+ ++.+|+-|.||+++++..     .+.++|..|..-| ++|.+.   ..-|+|+||+|+.+|+.
T Consensus       279 aNF~VV~~LLDSgvC~-VD~qNrAGYtpiMLaALA~lk~~~d~~vV~~LF~mg-nVNaKA---sQ~gQTALMLAVSHGr~  353 (452)
T KOG0514|consen  279 ANFDVVSILLDSGVCD-VDQQNRAGYTPVMLAALAKLKQPADRTVVERLFKMG-DVNAKA---SQHGQTALMLAVSHGRV  353 (452)
T ss_pred             cchHHHHHHhccCccc-ccccccccccHHHHHHHHhhcchhhHHHHHHHHhcc-Ccchhh---hhhcchhhhhhhhcCcH
Confidence            6788888877766554 788999999999998854     4678899998886 577664   67799999999999999


Q ss_pred             HHHHHHHHcCCCCCcccCCCCCChHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCCCCCcccccccchHHHHHHHHHhhh
Q 028370           86 EVMDVLLERGADIDARTKGACGWTPLHTAAKERKKEAVRFLIENGAFLPDDINDSRFNPPLHYCPSLEWAYEEMMRFQRE  165 (210)
Q Consensus        86 ~~v~~Ll~~g~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~~~l~~  165 (210)
                      ++|+.|+.+|+|+|.+|.+  |.|+|++||..|+.+++++|+..+. .+....|.+|.|+|.+|-+.++.-...+-+.+.
T Consensus       354 d~vk~LLacgAdVNiQDdD--GSTALMCA~EHGhkEivklLLA~p~-cd~sLtD~DgSTAl~IAleagh~eIa~mlYa~~  430 (452)
T KOG0514|consen  354 DMVKALLACGADVNIQDDD--GSTALMCAAEHGHKEIVKLLLAVPS-CDISLTDVDGSTALSIALEAGHREIAVMLYAHM  430 (452)
T ss_pred             HHHHHHHHccCCCccccCC--ccHHHhhhhhhChHHHHHHHhccCc-ccceeecCCCchhhhhHHhcCchHHHHHHHHHH
Confidence            9999999999999999999  9999999999999999999999853 244899999999999998666544444554444


Q ss_pred             hhhc
Q 028370          166 SFSA  169 (210)
Q Consensus       166 ~~~~  169 (210)
                      .+..
T Consensus       431 n~~~  434 (452)
T KOG0514|consen  431 NIKR  434 (452)
T ss_pred             Hhhh
Confidence            4433

>PHA02795 ankyrin-like protein; Provisional

Probab=99.76  E-value=4.8e-18  Score=138.30  Aligned_cols=130  Identities=12%  Similarity=0.024  Sum_probs=110.3

Q ss_pred             ccCCCCChHHHHHHH--cCCHHHHHHHHHCCCCccccccCCCCCCCcHHHHHHHCCcHHHHHHHHHcCCCCCccc-C---
Q 028370           30 DTDDRGWTPLHIGAR--KGDIKLVKQLLDEGMDVNVAAWGPKSKGVTPLHLAAQGGHLEVMDVLLERGADIDART-K---  103 (210)
Q Consensus        30 ~~d~~g~t~L~~A~~--~g~~~~v~~Ll~~g~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~-~---  103 (210)
                      .++..++|+||.++.  .|+.+++++|+++|++++..    +  +.||+|+|+..++.+++++|+++|++..... .   
T Consensus       111 ~~~~~~~~~L~~~~~n~~n~~eiV~~LI~~GADIn~~----~--~~t~lh~A~~~~~~eIVk~Lls~Ga~~~n~~~~~l~  184 (437)
T PHA02795        111 KNCNSVQDLLLYYLSNAYVEIDIVDFMVDHGAVIYKI----E--CLNAYFRGICKKESSVVEFILNCGIPDENDVKLDLY  184 (437)
T ss_pred             hccccccHHHHHHHHhcCCCHHHHHHHHHCCCCCCCC----C--CCCHHHHHHHcCcHHHHHHHHhcCCcccccccchhh
Confidence            477789999999999  89999999999999999864    3  4799999999999999999999998543221 1   


Q ss_pred             CCCCChHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCCCCCcccccccchHHHHHHHHHhhhhhhc
Q 028370          104 GACGWTPLHTAAKERKKEAVRFLIENGAFLPDDINDSRFNPPLHYCPSLEWAYEEMMRFQRESFSA  169 (210)
Q Consensus       104 ~~~g~tpL~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~~~l~~~~~~  169 (210)
                      +..+.|++|.|...++.+++++|+++|+++  +.+|..|.||||+|+..  +..+++++|.+....
T Consensus       185 ~~~~~t~l~~a~~~~~~eIve~LIs~GADI--N~kD~~G~TpLh~Aa~~--g~~eiVelLL~~GAd  246 (437)
T PHA02795        185 KIIQYTRGFLVDEPTVLEIYKLCIPYIEDI--NQLDAGGRTLLYRAIYA--GYIDLVSWLLENGAN  246 (437)
T ss_pred             hhhccchhHHHHhcCHHHHHHHHHhCcCCc--CcCCCCCCCHHHHHHHc--CCHHHHHHHHHCCCC
Confidence            122779999999999999999999999976  88999999999999954  457899998876543

>PLN03192 Voltage-dependent potassium channel; Provisional

Probab=99.75  E-value=1.7e-17  Score=147.35  Aligned_cols=126  Identities=24%  Similarity=0.270  Sum_probs=110.8

Q ss_pred             cCCCCChHHHHHHHcCCHHHHHHHHHCCCCccccccCCCCCCCcHHHHHHHCCcHHHHHHHHHcCCCCCcccCCCCCChH
Q 028370           31 TDDRGWTPLHIGARKGDIKLVKQLLDEGMDVNVAAWGPKSKGVTPLHLAAQGGHLEVMDVLLERGADIDARTKGACGWTP  110 (210)
Q Consensus        31 ~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~~g~tp  110 (210)
                      .+..+.++|+.|+..|+.++++.|++.|++++..    |..|.||||+|+..|+.+++++|+++|++++.++.+  |.||
T Consensus       521 ~~~~~~~~L~~Aa~~g~~~~l~~Ll~~G~d~n~~----d~~G~TpLh~Aa~~g~~~~v~~Ll~~gadin~~d~~--G~Tp  594 (823)
T PLN03192        521 DDPNMASNLLTVASTGNAALLEELLKAKLDPDIG----DSKGRTPLHIAASKGYEDCVLVLLKHACNVHIRDAN--GNTA  594 (823)
T ss_pred             CCccchhHHHHHHHcCCHHHHHHHHHCCCCCCCC----CCCCCCHHHHHHHcChHHHHHHHHhcCCCCCCcCCC--CCCH
Confidence            3445679999999999999999999999999988    999999999999999999999999999999998877  9999


Q ss_pred             HHHHHhcCCHHHHHHHHHcCCCCCCCCCCCCCCCcccccccchHHHHHHHHHhhhhhh
Q 028370          111 LHTAAKERKKEAVRFLIENGAFLPDDINDSRFNPPLHYCPSLEWAYEEMMRFQRESFS  168 (210)
Q Consensus       111 L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~~~l~~~~~  168 (210)
                      ||+|+..|+.+++++|++.++..    ....|.++|++|+.  .+..+++++|.+...
T Consensus       595 L~~A~~~g~~~iv~~L~~~~~~~----~~~~~~~~L~~Aa~--~g~~~~v~~Ll~~Ga  646 (823)
T PLN03192        595 LWNAISAKHHKIFRILYHFASIS----DPHAAGDLLCTAAK--RNDLTAMKELLKQGL  646 (823)
T ss_pred             HHHHHHhCCHHHHHHHHhcCccc----CcccCchHHHHHHH--hCCHHHHHHHHHCCC
Confidence            99999999999999999988743    23456789999994  445788888876543

>KOG4214 consensus Myotrophin and similar proteins [Transcription]

Probab=99.74  E-value=2.2e-17  Score=104.19  Aligned_cols=105  Identities=33%  Similarity=0.523  Sum_probs=94.5

Q ss_pred             hHHHHHHHcCCHHHHHHHHHCCCCccccccCCCCCCCcHHHHHHHCCcHHHHHHHHHcCCCCCcccCCCCCChHHHHHHh
Q 028370           37 TPLHIGARKGDIKLVKQLLDEGMDVNVAAWGPKSKGVTPLHLAAQGGHLEVMDVLLERGADIDARTKGACGWTPLHTAAK  116 (210)
Q Consensus        37 t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~~g~tpL~~A~~  116 (210)
                      --+.|++++|.++.|+..+..|.+++..     ..|++|||+|+-.|+.+++++|+.-|++++..+..  |-|||--|++
T Consensus         4 ~~~~W~vkNG~~DeVk~~v~~g~nVn~~-----~ggR~plhyAAD~GQl~ilefli~iGA~i~~kDKy--gITPLLsAvw   76 (117)
T KOG4214|consen    4 MSVAWNVKNGEIDEVKQSVNEGLNVNEI-----YGGRTPLHYAADYGQLSILEFLISIGANIQDKDKY--GITPLLSAVW   76 (117)
T ss_pred             hhHhhhhccCcHHHHHHHHHccccHHHH-----hCCcccchHhhhcchHHHHHHHHHhccccCCcccc--CCcHHHHHHH
Confidence            3467999999999999999999888754     47899999999999999999999999999988776  9999999999


Q ss_pred             cCCHHHHHHHHHcCCCCCCCCCCCCCCCcccccc
Q 028370          117 ERKKEAVRFLIENGAFLPDDINDSRFNPPLHYCP  150 (210)
Q Consensus       117 ~g~~~~v~~Ll~~g~~~~~~~~~~~g~t~l~~a~  150 (210)
                      .|+.+||++|+++|+  +..++..+|++.+..+-
T Consensus        77 EGH~~cVklLL~~GA--drt~~~PdG~~~~eate  108 (117)
T KOG4214|consen   77 EGHRDCVKLLLQNGA--DRTIHAPDGTALIEATE  108 (117)
T ss_pred             HhhHHHHHHHHHcCc--ccceeCCCchhHHhhcc
Confidence            999999999999999  45888889988887654

>PHA02884 ankyrin repeat protein; Provisional

Probab=99.73  E-value=6.1e-17  Score=126.89  Aligned_cols=126  Identities=21%  Similarity=0.254  Sum_probs=102.0

Q ss_pred             hhhccc----CCCCChHHHHHHHcCCHHHHHHHHHCCCCccccccCCCCCCCcHHHHHHHCCcHHHHHHHHHcCCCCCcc
Q 028370           26 RSVIDT----DDRGWTPLHIGARKGDIKLVKQLLDEGMDVNVAAWGPKSKGVTPLHLAAQGGHLEVMDVLLERGADIDAR  101 (210)
Q Consensus        26 ~~~~~~----d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~  101 (210)
                      .+++.+    +..|.||||+|+..++.+++++|+++|++++...   +..|.||||+|+..++.+++++|+..|++++..
T Consensus        57 AdiN~~~~~sd~~g~TpLh~Aa~~~~~eivklLL~~GADVN~~~---~~~g~TpLh~Aa~~~~~eivklLL~~GAdin~k  133 (300)
T PHA02884         57 ADPEAPFPLSENSKTNPLIYAIDCDNDDAAKLLIRYGADVNRYA---EEAKITPLYISVLHGCLKCLEILLSYGADINIQ  133 (300)
T ss_pred             CCccccCcccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCcCccc---CCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCC
Confidence            445555    4589999999999999999999999999999752   457999999999999999999999999999999


Q ss_pred             cCCCCCChHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCCCCCcccccccchHHHHHHHHHhhhhhh
Q 028370          102 TKGACGWTPLHTAAKERKKEAVRFLIENGAFLPDDINDSRFNPPLHYCPSLEWAYEEMMRFQRESFS  168 (210)
Q Consensus       102 ~~~~~g~tpL~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~~~l~~~~~  168 (210)
                      +.+  |.||||+|+..++.+++..+.  |.    . .+..+.+|..++.     ..+++++|....-
T Consensus       134 d~~--G~TpL~~A~~~~~~~~~~~~~--~~----~-~~~~~~~~~~~~~-----n~ei~~~Lish~v  186 (300)
T PHA02884        134 TND--MVTPIELALMICNNFLAFMIC--DN----E-ISNFYKHPKKILI-----NFDILKILVSHFI  186 (300)
T ss_pred             CCC--CCCHHHHHHHhCChhHHHHhc--CC----c-ccccccChhhhhc-----cHHHHHHHHHHHH
Confidence            887  999999999999988876664  33    1 3445567877653     2466666655543

>KOG0505 consensus Myosin phosphatase, regulatory subunit [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=99.73  E-value=3.9e-17  Score=132.19  Aligned_cols=148  Identities=30%  Similarity=0.409  Sum_probs=125.4

Q ss_pred             hhHHHHHHhhHHHhhhhcccCCCCChHHHHHHHcCCHHHHHHHHHCCCCccccccCCCCCCCcHHHHHHHCCcHHHHHHH
Q 028370           12 PFTLQRKASRKRFFRSVIDTDDRGWTPLHIGARKGDIKLVKQLLDEGMDVNVAAWGPKSKGVTPLHLAAQGGHLEVMDVL   91 (210)
Q Consensus        12 ~~~~~~~~~~~~~~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~L   91 (210)
                      -...+.+.....  ..++..+.+|.|+||.+|.-.+.++|++|++.|++++..    |..|+||||.|+..|+..++++|
T Consensus        52 d~~ev~~ll~~g--a~~~~~n~DglTalhq~~id~~~e~v~~l~e~ga~Vn~~----d~e~wtPlhaaascg~~~i~~~l  125 (527)
T KOG0505|consen   52 DLEEVRKLLNRG--ASPNLCNVDGLTALHQACIDDNLEMVKFLVENGANVNAQ----DNEGWTPLHAAASCGYLNIVEYL  125 (527)
T ss_pred             cHHHHHHHhccC--CCccccCCccchhHHHHHhcccHHHHHHHHHhcCCcccc----ccccCCcchhhcccccHHHHHHH
Confidence            334444444444  445778999999999999999999999999999999988    99999999999999999999999


Q ss_pred             HHcCCCCCcccCC---------------------------------------------------------CCCChHHHHH
Q 028370           92 LERGADIDARTKG---------------------------------------------------------ACGWTPLHTA  114 (210)
Q Consensus        92 l~~g~~~~~~~~~---------------------------------------------------------~~g~tpL~~A  114 (210)
                      ++.|+++...+.+                                                         ..|-|.||.|
T Consensus       126 i~~gA~~~avNsdg~~P~dl~e~ea~~~~l~~~~~r~gi~iea~R~~~e~~ml~D~~q~l~~G~~~d~~~~rG~T~lHvA  205 (527)
T KOG0505|consen  126 IQHGANLLAVNSDGNMPYDLAEDEATLDVLETEMARQGIDIEAARKAEEQTMLDDARQWLNAGAELDARHARGATALHVA  205 (527)
T ss_pred             HHhhhhhhhccCCCCCccccccCcchhHHHHHHHHHhcccHHHHhhhhHHHHHHHHHHHHhccccccccccccchHHHHH
Confidence            9988765544321                                                         2388999999


Q ss_pred             HhcCCHHHHHHHHHcCCCCCCCCCCCCCCCcccccccchHHHHHHHHHhhhhhhc
Q 028370          115 AKERKKEAVRFLIENGAFLPDDINDSRFNPPLHYCPSLEWAYEEMMRFQRESFSA  169 (210)
Q Consensus       115 ~~~g~~~~v~~Ll~~g~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~~~l~~~~~~  169 (210)
                      +..|..++.++|+..|.++  .++|.+|+||||.|+  -|+..+..++|.+....
T Consensus       206 aa~Gy~e~~~lLl~ag~~~--~~~D~dgWtPlHAAA--~Wg~~~~~elL~~~ga~  256 (527)
T KOG0505|consen  206 AANGYTEVAALLLQAGYSV--NIKDYDGWTPLHAAA--HWGQEDACELLVEHGAD  256 (527)
T ss_pred             HhhhHHHHHHHHHHhccCc--ccccccCCCcccHHH--HhhhHhHHHHHHHhhcc
Confidence            9999999999999999965  999999999999998  78888998888877544

>KOG4177 consensus Ankyrin [Cell wall/membrane/envelope biogenesis]

Probab=99.72  E-value=1.5e-17  Score=146.98  Aligned_cols=120  Identities=36%  Similarity=0.525  Sum_probs=109.4

Q ss_pred             hcccCCCCChHHHHHHHcCCHHHHHHHHHCCCCccccccCCCCCCCcHHHHHHHCCcHHHHHHHHHcCCCCCcccCCCCC
Q 028370           28 VIDTDDRGWTPLHIGARKGDIKLVKQLLDEGMDVNVAAWGPKSKGVTPLHLAAQGGHLEVMDVLLERGADIDARTKGACG  107 (210)
Q Consensus        28 ~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~~g  107 (210)
                      .+.++..|.||||.||..|+.++|++|+++|++++.+    +..|+||||.|+..|+.+|+.+|+++|+++|..+.+  |
T Consensus       533 v~~~~~r~~TpLh~A~~~g~v~~VkfLLe~gAdv~ak----~~~G~TPLH~Aa~~G~~~i~~LLlk~GA~vna~d~~--g  606 (1143)
T KOG4177|consen  533 VDLRTGRGYTPLHVAVHYGNVDLVKFLLEHGADVNAK----DKLGYTPLHQAAQQGHNDIAELLLKHGASVNAADLD--G  606 (1143)
T ss_pred             eehhcccccchHHHHHhcCCchHHHHhhhCCcccccc----CCCCCChhhHHHHcChHHHHHHHHHcCCCCCccccc--C
Confidence            4457778999999999999999999999999999999    899999999999999999999999999999999998  9


Q ss_pred             ChHHHHHHhcCCHHHHHHHHHcCCC---CCCCCCCCCCCCcccccccch
Q 028370          108 WTPLHTAAKERKKEAVRFLIENGAF---LPDDINDSRFNPPLHYCPSLE  153 (210)
Q Consensus       108 ~tpL~~A~~~g~~~~v~~Ll~~g~~---~~~~~~~~~g~t~l~~a~~~~  153 (210)
                      +||||.|+..|+++++++|...+++   ......+..|.+|...+....
T Consensus       607 ~TpL~iA~~lg~~~~~k~l~~~~~~~~~~~~~~e~~~g~~p~~v~e~~~  655 (1143)
T KOG4177|consen  607 FTPLHIAVRLGYLSVVKLLKVVTATPAATDPVKENRKGAVPEDVAEELD  655 (1143)
T ss_pred             cchhHHHHHhcccchhhHHHhccCccccccchhhhhcccChhhHHHHhh
Confidence            9999999999999999999999985   114677889999999876443

>KOG0502 consensus Integral membrane ankyrin-repeat protein Kidins220 (protein kinase D substrate) [General function prediction only]

Probab=99.72  E-value=3.3e-17  Score=119.29  Aligned_cols=128  Identities=25%  Similarity=0.304  Sum_probs=106.8

Q ss_pred             hcccCCCCChHHHHHHHcCCHHHHHHHHHCCCCccccccCCCCCCCcHHHHHHHCCcHHHHHHHHHcCCCCCcccCCCCC
Q 028370           28 VIDTDDRGWTPLHIGARKGDIKLVKQLLDEGMDVNVAAWGPKSKGVTPLHLAAQGGHLEVMDVLLERGADIDARTKGACG  107 (210)
Q Consensus        28 ~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~~g  107 (210)
                      .++.+--+++|+.+++..-+++.+-.+.++..  |..    |..|.|||.||+..|++.+|++|++.|++++..-..  .
T Consensus       122 gnevs~~p~s~~slsVhql~L~~~~~~~~n~V--N~~----De~GfTpLiWAaa~G~i~vV~fLL~~GAdp~~lgk~--r  193 (296)
T KOG0502|consen  122 GNEVSLMPWSPLSLSVHQLHLDVVDLLVNNKV--NAC----DEFGFTPLIWAAAKGHIPVVQFLLNSGADPDALGKY--R  193 (296)
T ss_pred             CCccccccCChhhHHHHHHHHHHHHHHhhccc--cCc----cccCchHhHHHHhcCchHHHHHHHHcCCChhhhhhh--h
Confidence            45566677888888888777777666665543  333    899999999999999999999999999999988766  7


Q ss_pred             ChHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCCCCCcccccccchHHHHHHHHHhhhhh
Q 028370          108 WTPLHTAAKERKKEAVRFLIENGAFLPDDINDSRFNPPLHYCPSLEWAYEEMMRFQRESF  167 (210)
Q Consensus       108 ~tpL~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~~~l~~~~  167 (210)
                      +|+|.+|+..|..++|++|+..+.++  +.-|.+|-|||-||+.  .++..+++-|....
T Consensus       194 esALsLAt~ggytdiV~lLL~r~vdV--NvyDwNGgTpLlyAvr--gnhvkcve~Ll~sG  249 (296)
T KOG0502|consen  194 ESALSLATRGGYTDIVELLLTREVDV--NVYDWNGGTPLLYAVR--GNHVKCVESLLNSG  249 (296)
T ss_pred             hhhHhHHhcCChHHHHHHHHhcCCCc--ceeccCCCceeeeeec--CChHHHHHHHHhcC
Confidence            89999999999999999999999976  8999999999999994  45567777666553

>PHA02792 ankyrin-like protein; Provisional

Probab=99.72  E-value=1.2e-16  Score=134.83  Aligned_cols=109  Identities=19%  Similarity=0.190  Sum_probs=97.1

Q ss_pred             CChHHHHHHHcCCHHHHHHHHHCCCCccccccCCCCC--CCcHHHHHHHCCcH---HHHHHHHHcCCCCCcccCCCCCCh
Q 028370           35 GWTPLHIGARKGDIKLVKQLLDEGMDVNVAAWGPKSK--GVTPLHLAAQGGHL---EVMDVLLERGADIDARTKGACGWT  109 (210)
Q Consensus        35 g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~--g~t~L~~A~~~~~~---~~v~~Ll~~g~~~~~~~~~~~g~t  109 (210)
                      +..+++.|+..|+.+++++|+++|++++..    |..  +.||||+|+.....   +++++|+++|++++.++..  |.|
T Consensus       339 ~~n~~~~Aa~~gn~eIVelLIs~GADIN~k----D~~g~~~TpLh~A~~n~~~~v~~IlklLIs~GADIN~kD~~--G~T  412 (631)
T PHA02792        339 HINKYFQKFDNRDPKVVEYILKNGNVVVED----DDNIINIMPLFPTLSIHESDVLSILKLCKPYIDDINKIDKH--GRS  412 (631)
T ss_pred             cchHHHHHHHcCCHHHHHHHHHcCCchhhh----cCCCCChhHHHHHHHhccHhHHHHHHHHHhcCCcccccccc--Ccc
Confidence            566799999999999999999999999877    655  46999998776654   4689999999999999887  999


Q ss_pred             HHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCCCCCccccccc
Q 028370          110 PLHTAAKERKKEAVRFLIENGAFLPDDINDSRFNPPLHYCPS  151 (210)
Q Consensus       110 pL~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~g~t~l~~a~~  151 (210)
                      |||+|+..++.+++++|+++|+++  +.++..|.||+++|..
T Consensus       413 PLh~Aa~~~n~eivelLLs~GADI--N~kD~~G~TpL~~A~~  452 (631)
T PHA02792        413 ILYYCIESHSVSLVEWLIDNGADI--NITTKYGSTCIGICVI  452 (631)
T ss_pred             hHHHHHHcCCHHHHHHHHHCCCCC--CCcCCCCCCHHHHHHH
Confidence            999999999999999999999966  8899999999999863

>PHA02792 ankyrin-like protein; Provisional

Probab=99.72  E-value=3.7e-17  Score=137.87  Aligned_cols=136  Identities=19%  Similarity=0.196  Sum_probs=113.9

Q ss_pred             hhhhcccCCCCChHHHH-HHHcCCHHHHHHHHHCCCCccccccCCCCCCCcHHHHHHH-CCcHHHHHHHHHcCCCCCccc
Q 028370           25 FRSVIDTDDRGWTPLHI-GARKGDIKLVKQLLDEGMDVNVAAWGPKSKGVTPLHLAAQ-GGHLEVMDVLLERGADIDART  102 (210)
Q Consensus        25 ~~~~~~~d~~g~t~L~~-A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~g~t~L~~A~~-~~~~~~v~~Ll~~g~~~~~~~  102 (210)
                      ..+.+..+.+|.+++|+ |+.+|++|++++|+++|++++..    +..+.+|+++|+. .++.+++++|++.|+++...+
T Consensus        61 ~~~~~~~n~~~~~~~~~~~s~n~~lElvk~LI~~GAdvN~~----~n~~~~~l~ya~~~~~~~eivk~Ll~~Gad~~~~~  136 (631)
T PHA02792         61 LSSVDYKNINDFDIFEYLCSDNIDIELLKLLISKGLEINSI----KNGINIVEKYATTSNPNVDVFKLLLDKGIPTCSNI  136 (631)
T ss_pred             HhCCCcCccCCccHHHHHHHhcccHHHHHHHHHcCCCcccc----cCCCCcceeEeecCCCChHHHHHHHHCCCCccccc
Confidence            35566788899999977 66789999999999999999988    6778999999966 699999999999998743210


Q ss_pred             ----------------------------------CCCCCChHHHHHHhcC-------CHHHHHHHHHcCCCCCCCCCCCC
Q 028370          103 ----------------------------------KGACGWTPLHTAAKER-------KKEAVRFLIENGAFLPDDINDSR  141 (210)
Q Consensus       103 ----------------------------------~~~~g~tpL~~A~~~g-------~~~~v~~Ll~~g~~~~~~~~~~~  141 (210)
                                                        .+..|.||||+|+.++       +.+++++|+++|+++  +..|..
T Consensus       137 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~g~t~L~~~i~~~s~~~~~~~~~v~k~Li~~g~~~--~~~d~~  214 (631)
T PHA02792        137 QYGYKIIIEQITRAEYYNWDDELDDYDYDYTTDYDDRMGKTVLYYYIITRSQDGYATSLDVINYLISHEKEM--RYYTYR  214 (631)
T ss_pred             ccCcchhhhhcccccccchhhhccccccccccccCCCCCCchHHHHHhhCCcccccCCHHHHHHHHhCCCCc--CccCCC
Confidence                                              1233999999999999       899999999999966  888999


Q ss_pred             CCCcccccccchHHHHHHHHHhhhh
Q 028370          142 FNPPLHYCPSLEWAYEEMMRFQRES  166 (210)
Q Consensus       142 g~t~l~~a~~~~~~~~~~~~~l~~~  166 (210)
                      |.||||+|+.......+++++|...
T Consensus       215 g~t~l~~~~~~~~i~~ei~~~L~~~  239 (631)
T PHA02792        215 EHTTLYYYVDKCDIKREIFDALFDS  239 (631)
T ss_pred             CChHHHHHHHcccchHHHHHHHHhc
Confidence            9999999996654468898888764

>TIGR00870 trp transient-receptor-potential calcium channel protein

Probab=99.70  E-value=1e-16  Score=141.33  Aligned_cols=143  Identities=27%  Similarity=0.239  Sum_probs=110.2

Q ss_pred             hccchhHHHHHHhhHHHhhhhcccCCCCChHHH-HHHHcCCHHHHHHHHHCCCC--ccccc-------------------
Q 028370            8 EQLGPFTLQRKASRKRFFRSVIDTDDRGWTPLH-IGARKGDIKLVKQLLDEGMD--VNVAA-------------------   65 (210)
Q Consensus         8 ~~~~~~~~~~~~~~~~~~~~~~~~d~~g~t~L~-~A~~~g~~~~v~~Ll~~g~~--~~~~~-------------------   65 (210)
                      -+.|....+++...+.-..+++..|..|+|||| .|+.+++.++++.|++.|+.  .....                   
T Consensus        25 ~~~g~~~~v~~lL~~~~~~~in~~d~~G~t~Lh~~A~~~~~~eiv~lLl~~g~~~~~G~T~Lh~A~~~~~~~v~~ll~~l  104 (743)
T TIGR00870        25 AERGDLASVYRDLEEPKKLNINCPDRLGRSALFVAAIENENLELTELLLNLSCRGAVGDTLLHAISLEYVDAVEAILLHL  104 (743)
T ss_pred             HHcCCHHHHHHHhccccccCCCCcCccchhHHHHHHHhcChHHHHHHHHhCCCCCCcChHHHHHHHhccHHHHHHHHHHH
Confidence            345666677666655334456778888999999 88888888888888887731  00000                   


Q ss_pred             --cC---------------CCCCCCcHHHHHHHCCcHHHHHHHHHcCCCCCcccC------------CCCCChHHHHHHh
Q 028370           66 --WG---------------PKSKGVTPLHLAAQGGHLEVMDVLLERGADIDARTK------------GACGWTPLHTAAK  116 (210)
Q Consensus        66 --~~---------------~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~------------~~~g~tpL~~A~~  116 (210)
                        ..               ....|.||||+|+..|+.+++++|+++|++++..+.            ...|.||||.|+.
T Consensus       105 ~~~~~~~~~~~~~~~~~~~~~~~G~TpLhlAa~~~~~eiVklLL~~GAdv~~~~~~~~~~~~~~~~~~~~g~tpL~~Aa~  184 (743)
T TIGR00870       105 LAAFRKSGPLELANDQYTSEFTPGITALHLAAHRQNYEIVKLLLERGASVPARACGDFFVKSQGVDSFYHGESPLNAAAC  184 (743)
T ss_pred             hhcccccCchhhhccccccccCCCCcHHHHHHHhCCHHHHHHHHhCCCCCCcCcCCchhhcCCCCCcccccccHHHHHHH
Confidence              00               023589999999999999999999999999986532            2248899999999


Q ss_pred             cCCHHHHHHHHHcCCCCCCCCCCCCCCCcccccccc
Q 028370          117 ERKKEAVRFLIENGAFLPDDINDSRFNPPLHYCPSL  152 (210)
Q Consensus       117 ~g~~~~v~~Ll~~g~~~~~~~~~~~g~t~l~~a~~~  152 (210)
                      .|+.+++++|+++|+++  +..|..|+||||+|+..
T Consensus       185 ~~~~~iv~lLl~~gadi--n~~d~~g~T~Lh~A~~~  218 (743)
T TIGR00870       185 LGSPSIVALLSEDPADI--LTADSLGNTLLHLLVME  218 (743)
T ss_pred             hCCHHHHHHHhcCCcch--hhHhhhhhHHHHHHHhh
Confidence            99999999999999965  88999999999999854

after chronic exposure to capsaicin. (McCleskey and Gold, 1999).

>TIGR00870 trp transient-receptor-potential calcium channel protein

Probab=99.69  E-value=7.3e-17  Score=142.29  Aligned_cols=130  Identities=26%  Similarity=0.263  Sum_probs=106.4

Q ss_pred             CCCChHHHHHHHcCCHHHHHHHHHCCCCcccccc----------CCCCCCCcHHHHHHHCCcHHHHHHHHHcCCCCCccc
Q 028370           33 DRGWTPLHIGARKGDIKLVKQLLDEGMDVNVAAW----------GPKSKGVTPLHLAAQGGHLEVMDVLLERGADIDART  102 (210)
Q Consensus        33 ~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~----------~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~  102 (210)
                      ..|.||||.|+.+|+.++++.|+++|++++....          .....|.||||.|+..|+.+++++|+++|++++..+
T Consensus       126 ~~G~TpLhlAa~~~~~eiVklLL~~GAdv~~~~~~~~~~~~~~~~~~~~g~tpL~~Aa~~~~~~iv~lLl~~gadin~~d  205 (743)
T TIGR00870       126 TPGITALHLAAHRQNYEIVKLLLERGASVPARACGDFFVKSQGVDSFYHGESPLNAAACLGSPSIVALLSEDPADILTAD  205 (743)
T ss_pred             CCCCcHHHHHHHhCCHHHHHHHHhCCCCCCcCcCCchhhcCCCCCcccccccHHHHHHHhCCHHHHHHHhcCCcchhhHh
Confidence            4699999999999999999999999999986421          012358999999999999999999999999999988


Q ss_pred             CCCCCChHHHHHHhcC---------CHHHHHHHHHcCCCCC-C----CCCCCCCCCcccccccchHHHHHHHHHhhhh
Q 028370          103 KGACGWTPLHTAAKER---------KKEAVRFLIENGAFLP-D----DINDSRFNPPLHYCPSLEWAYEEMMRFQRES  166 (210)
Q Consensus       103 ~~~~g~tpL~~A~~~g---------~~~~v~~Ll~~g~~~~-~----~~~~~~g~t~l~~a~~~~~~~~~~~~~l~~~  166 (210)
                      ..  |+||||+|+..+         ...+.++++..++... .    .+.|..|.|||++|+..+  ..++++++.+.
T Consensus       206 ~~--g~T~Lh~A~~~~~~~~~~~~l~~~~~~~l~~ll~~~~~~~el~~i~N~~g~TPL~~A~~~g--~~~l~~lLL~~  279 (743)
T TIGR00870       206 SL--GNTLLHLLVMENEFKAEYEELSCQMYNFALSLLDKLRDSKELEVILNHQGLTPLKLAAKEG--RIVLFRLKLAI  279 (743)
T ss_pred             hh--hhHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHhccCChHhhhhhcCCCCCCchhhhhhcC--CccHHHHHHHH
Confidence            77  999999999986         3456777887766431 1    567999999999999544  46777777763

after chronic exposure to capsaicin. (McCleskey and Gold, 1999).

>KOG3676 consensus Ca2+-permeable cation channel OSM-9 and related channels (OTRPC family) [Inorganic ion transport and metabolism; Signal transduction mechanisms]

Probab=99.69  E-value=3.1e-16  Score=132.61  Aligned_cols=129  Identities=31%  Similarity=0.400  Sum_probs=113.5

Q ss_pred             CCChHHHHHHHcCCHHHHHHHHHCCCCccccccC----CC---------------CCCCcHHHHHHHCCcHHHHHHHHHc
Q 028370           34 RGWTPLHIGARKGDIKLVKQLLDEGMDVNVAAWG----PK---------------SKGVTPLHLAAQGGHLEVMDVLLER   94 (210)
Q Consensus        34 ~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~----~~---------------~~g~t~L~~A~~~~~~~~v~~Ll~~   94 (210)
                      .|+||||.|+.+.+.++|+.|++.|||++.+.-+    ++               ..|+.||.+|+..++.+++++|+++
T Consensus       183 ~GqSaLHiAIv~~~~~~V~lLl~~gADV~aRa~G~FF~~~dqk~~rk~T~Y~G~~YfGEyPLSfAAC~nq~eivrlLl~~  262 (782)
T KOG3676|consen  183 YGQSALHIAIVNRDAELVRLLLAAGADVHARACGAFFCPDDQKASRKSTNYTGYFYFGEYPLSFAACTNQPEIVRLLLAH  262 (782)
T ss_pred             cCcchHHHHHHhccHHHHHHHHHcCCchhhHhhccccCcccccccccccCCcceeeeccCchHHHHHcCCHHHHHHHHhc
Confidence            6999999999999999999999999999876421    11               1377899999999999999999999


Q ss_pred             CCCCCcccCCCCCChHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCCCCCcccccccchHHHHHHHHHhhhh
Q 028370           95 GADIDARTKGACGWTPLHTAAKERKKEAVRFLIENGAFLPDDINDSRFNPPLHYCPSLEWAYEEMMRFQRES  166 (210)
Q Consensus        95 g~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~~~l~~~  166 (210)
                      |+|++.+|..  |+|.||..+..-..++.++++++|++-...++|..|-|||-.|+  .-+..++.+.+.+.
T Consensus       263 gAd~~aqDS~--GNTVLH~lVi~~~~~My~~~L~~ga~~l~~v~N~qgLTPLtLAa--klGk~emf~~ile~  330 (782)
T KOG3676|consen  263 GADPNAQDSN--GNTVLHMLVIHFVTEMYDLALELGANALEHVRNNQGLTPLTLAA--KLGKKEMFQHILER  330 (782)
T ss_pred             CCCCCccccC--CChHHHHHHHHHHHHHHHHHHhcCCCccccccccCCCChHHHHH--HhhhHHHHHHHHHh
Confidence            9999999998  99999999999999999999999996225999999999999999  44557777777665

>COG0666 Arp FOG: Ankyrin repeat [General function prediction only]

Probab=99.68  E-value=1.4e-15  Score=114.74  Aligned_cols=134  Identities=38%  Similarity=0.460  Sum_probs=115.6

Q ss_pred             HhhhhcccCCCCChHHHHHHHcCCHHHHHHHHHCCCCccccccCCCCCCCcHHHHHHHCCc-----HHHHHHHHHcCC--
Q 028370           24 FFRSVIDTDDRGWTPLHIGARKGDIKLVKQLLDEGMDVNVAAWGPKSKGVTPLHLAAQGGH-----LEVMDVLLERGA--   96 (210)
Q Consensus        24 ~~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~g~t~L~~A~~~~~-----~~~v~~Ll~~g~--   96 (210)
                      ........+..+.++++.++..+..+++.+++..|++++..    +..|.||+|+|+..++     .+++++|++.|+  
T Consensus        62 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~----~~~g~t~l~~a~~~~~~~~~~~~~~~~ll~~g~~~  137 (235)
T COG0666          62 VDRHLAARDLDGRLPLHSAASKGDDKIVKLLLASGADVNAK----DADGDTPLHLAALNGNPPEGNIEVAKLLLEAGADL  137 (235)
T ss_pred             cccccccCCccccCHHHHHHHcCcHHHHHHHHHcCCCcccc----cCCCCcHHHHHHhcCCcccchHHHHHHHHHcCCCC
Confidence            33344456667999999999999999999999999999888    9999999999999999     999999999999  


Q ss_pred             -CCCcccCCCCCChHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCCCCCcccccccchHHHHHHHHHhhhhh
Q 028370           97 -DIDARTKGACGWTPLHTAAKERKKEAVRFLIENGAFLPDDINDSRFNPPLHYCPSLEWAYEEMMRFQRESF  167 (210)
Q Consensus        97 -~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~~~l~~~~  167 (210)
                       ..+.++..  |.||||+|+..|+.+++++|++.|+++  ..++..|.|++++|+..  +..++++.+....
T Consensus       138 ~~~~~~~~~--g~tpl~~A~~~~~~~~~~~ll~~~~~~--~~~~~~g~t~l~~a~~~--~~~~~~~~l~~~~  203 (235)
T COG0666         138 DVNNLRDED--GNTPLHWAALNGDADIVELLLEAGADP--NSRNSYGVTALDPAAKN--GRIELVKLLLDKG  203 (235)
T ss_pred             CCccccCCC--CCchhHHHHHcCchHHHHHHHhcCCCC--cccccCCCcchhhhccc--chHHHHHHHHhcC
Confidence             45555666  999999999999999999999999965  88899999999999944  4567777666643

>KOG0507 consensus CASK-interacting adaptor protein (caskin) and related proteins with ankyrin repeats and SAM domain [Signal transduction mechanisms]

Probab=99.67  E-value=8.9e-17  Score=134.68  Aligned_cols=131  Identities=29%  Similarity=0.374  Sum_probs=118.5

Q ss_pred             hhhcccCCCCChHHHHHHHcCCHHHHHHHHHCCCCccccccCCCCCCCcHHHHHHHCCcHHHHHHHHHcCCCCCcccCCC
Q 028370           26 RSVIDTDDRGWTPLHIGARKGDIKLVKQLLDEGMDVNVAAWGPKSKGVTPLHLAAQGGHLEVMDVLLERGADIDARTKGA  105 (210)
Q Consensus        26 ~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~  105 (210)
                      ++.+.+|.+|.|+||.|+.+|+.+++++|++..+-+++.    +..|.+|||+|++.|+.++++.++..+..++..+.. 
T Consensus        40 ds~n~qd~~gfTalhha~Lng~~~is~llle~ea~ldl~----d~kg~~plhlaaw~g~~e~vkmll~q~d~~na~~~e-  114 (854)
T KOG0507|consen   40 DSHNLQDYSGFTLLHHAVLNGQNQISKLLLDYEALLDLC----DTKGILPLHLAAWNGNLEIVKMLLLQTDILNAVNIE-  114 (854)
T ss_pred             ccccccCccchhHHHHHHhcCchHHHHHHhcchhhhhhh----hccCcceEEehhhcCcchHHHHHHhcccCCCccccc-
Confidence            556779999999999999999999999999999888887    889999999999999999999999998888888777 


Q ss_pred             CCChHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCCCCCcccccccchHHHHHHHHHhhhh
Q 028370          106 CGWTPLHTAAKERKKEAVRFLIENGAFLPDDINDSRFNPPLHYCPSLEWAYEEMMRFQRES  166 (210)
Q Consensus       106 ~g~tpL~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~~~l~~~  166 (210)
                       |.||||.|+..|+.+++.+|+.+|+  +..++|+.++|+++.|++.+  ..++++.+...
T Consensus       115 -~~tplhlaaqhgh~dvv~~Ll~~~a--dp~i~nns~~t~ldlA~qfg--r~~Vvq~ll~~  170 (854)
T KOG0507|consen  115 -NETPLHLAAQHGHLEVVFYLLKKNA--DPFIRNNSKETVLDLASRFG--RAEVVQMLLQK  170 (854)
T ss_pred             -CcCccchhhhhcchHHHHHHHhcCC--CccccCcccccHHHHHHHhh--hhHHHHHHhhh
Confidence             9999999999999999999999999  55999999999999999654  46777766665

>KOG0515 consensus p53-interacting protein 53BP/ASPP, contains ankyrin and SH3 domains [Cell cycle control, cell division, chromosome partitioning]

Probab=99.67  E-value=4e-16  Score=126.21  Aligned_cols=125  Identities=29%  Similarity=0.454  Sum_probs=111.7

Q ss_pred             HHHHHHcCCHHHHHHHHHCCCCccccccCCCCCCCcHHHHHHHCCcHHHHHHHHHcCCCCCcccCCCCCChHHHHHHhcC
Q 028370           39 LHIGARKGDIKLVKQLLDEGMDVNVAAWGPKSKGVTPLHLAAQGGHLEVMDVLLERGADIDARTKGACGWTPLHTAAKER  118 (210)
Q Consensus        39 L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~~g~tpL~~A~~~g  118 (210)
                      |.-|+..|.+++|+..+..-.|+..-    +..|.|+||.|+..||.+||+||+++|+++|..|.+  |+||||+|+.++
T Consensus       554 LLDaaLeGEldlVq~~i~ev~DpSqp----NdEGITaLHNAiCaghyeIVkFLi~~ganVNa~DSd--GWTPLHCAASCN  627 (752)
T KOG0515|consen  554 LLDAALEGELDLVQRIIYEVTDPSQP----NDEGITALHNAICAGHYEIVKFLIEFGANVNAADSD--GWTPLHCAASCN  627 (752)
T ss_pred             HHhhhhcchHHHHHHHHHhhcCCCCC----CccchhHHhhhhhcchhHHHHHHHhcCCcccCccCC--CCchhhhhhhcC
Confidence            34588889999999999988888766    899999999999999999999999999999999999  999999999999


Q ss_pred             CHHHHHHHHHcCCCCCCCCCCCCCCCcccccccchHHHHHHHHHhhhhhhcC
Q 028370          119 KKEAVRFLIENGAFLPDDINDSRFNPPLHYCPSLEWAYEEMMRFQRESFSAG  170 (210)
Q Consensus       119 ~~~~v~~Ll~~g~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~~~l~~~~~~~  170 (210)
                      ++.+|+.|++.|+-+ .-.+-.++.|+..-|-....++....++|.......
T Consensus       628 nv~~ckqLVe~Gaav-fAsTlSDmeTa~eKCee~eeGY~~CsqyL~~vqesm  678 (752)
T KOG0515|consen  628 NVPMCKQLVESGAAV-FASTLSDMETAAEKCEEMEEGYDQCSQYLYGVQESM  678 (752)
T ss_pred             chHHHHHHHhccceE-EeeecccccchhhhcchhhhhHHHHHHHHHHHHHhh
Confidence            999999999999854 355667778999999988999999999998775553

>KOG0195 consensus Integrin-linked kinase [Signal transduction mechanisms]

Probab=99.65  E-value=9.2e-17  Score=121.52  Aligned_cols=115  Identities=33%  Similarity=0.556  Sum_probs=96.3

Q ss_pred             HHcCCHHHHHHHHHC-CCCccccccCCCCCCCcHHHHHHHCCcHHHHHHHHHcCCCCCcccCCCCCChHHHHHHhcCCHH
Q 028370           43 ARKGDIKLVKQLLDE-GMDVNVAAWGPKSKGVTPLHLAAQGGHLEVMDVLLERGADIDARTKGACGWTPLHTAAKERKKE  121 (210)
Q Consensus        43 ~~~g~~~~v~~Ll~~-g~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~~g~tpL~~A~~~g~~~  121 (210)
                      |+.|+.-.|+.-++. .-|.|.-    |..|-+|||||++.|+..+++.|+..|+.++..+..  ..||||+|+..|+.+
T Consensus         8 cregna~qvrlwld~tehdln~g----ddhgfsplhwaakegh~aivemll~rgarvn~tnmg--ddtplhlaaahghrd   81 (448)
T KOG0195|consen    8 CREGNAFQVRLWLDDTEHDLNVG----DDHGFSPLHWAAKEGHVAIVEMLLSRGARVNSTNMG--DDTPLHLAAAHGHRD   81 (448)
T ss_pred             hhcCCeEEEEEEecCcccccccc----cccCcchhhhhhhcccHHHHHHHHhcccccccccCC--CCcchhhhhhcccHH
Confidence            455554444444433 3455555    788999999999999999999999999999998877  789999999999999


Q ss_pred             HHHHHHHcCCCCCCCCCCCCCCCcccccccchHHHHHHHHHhhhhh
Q 028370          122 AVRFLIENGAFLPDDINDSRFNPPLHYCPSLEWAYEEMMRFQRESF  167 (210)
Q Consensus       122 ~v~~Ll~~g~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~~~l~~~~  167 (210)
                      +|+.|++..+++  +..|..|+||||||+  -|++..+.+-|....
T Consensus        82 ivqkll~~kadv--navnehgntplhyac--fwgydqiaedli~~g  123 (448)
T KOG0195|consen   82 IVQKLLSRKADV--NAVNEHGNTPLHYAC--FWGYDQIAEDLISCG  123 (448)
T ss_pred             HHHHHHHHhccc--chhhccCCCchhhhh--hhcHHHHHHHHHhcc
Confidence            999999999977  999999999999999  888888887766543

>PTZ00322 6-phosphofructo-2-kinase/fructose-2,6-biphosphatase; Provisional

Probab=99.63  E-value=4e-15  Score=129.18  Aligned_cols=105  Identities=36%  Similarity=0.423  Sum_probs=95.6

Q ss_pred             HHHHHHHcCCHHHHHHHHHCCCCccccccCCCCCCCcHHHHHHHCCcHHHHHHHHHcCCCCCcccCCCCCChHHHHHHhc
Q 028370           38 PLHIGARKGDIKLVKQLLDEGMDVNVAAWGPKSKGVTPLHLAAQGGHLEVMDVLLERGADIDARTKGACGWTPLHTAAKE  117 (210)
Q Consensus        38 ~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~~g~tpL~~A~~~  117 (210)
                      .|+.|+..|+.+.++.|++.|++++..    |..|.||||+|+..|+.+++++|+++|++++..+..  |.||||+|+..
T Consensus        85 ~L~~aa~~G~~~~vk~LL~~Gadin~~----d~~G~TpLh~Aa~~g~~eiv~~LL~~Gadvn~~d~~--G~TpLh~A~~~  158 (664)
T PTZ00322         85 ELCQLAASGDAVGARILLTGGADPNCR----DYDGRTPLHIACANGHVQVVRVLLEFGADPTLLDKD--GKTPLELAEEN  158 (664)
T ss_pred             HHHHHHHcCCHHHHHHHHHCCCCCCCc----CCCCCcHHHHHHHCCCHHHHHHHHHCCCCCCCCCCC--CCCHHHHHHHC
Confidence            488999999999999999999999988    899999999999999999999999999999999887  99999999999


Q ss_pred             CCHHHHHHHHHc-------CCCCCCCCCCCCCCCcccccc
Q 028370          118 RKKEAVRFLIEN-------GAFLPDDINDSRFNPPLHYCP  150 (210)
Q Consensus       118 g~~~~v~~Ll~~-------g~~~~~~~~~~~g~t~l~~a~  150 (210)
                      |+.+++++|+.+       |++.  ...+..|.+|+..+.
T Consensus       159 g~~~iv~~Ll~~~~~~~~~ga~~--~~~~~~g~~~~~~~~  196 (664)
T PTZ00322        159 GFREVVQLLSRHSQCHFELGANA--KPDSFTGKPPSLEDS  196 (664)
T ss_pred             CcHHHHHHHHhCCCcccccCCCC--CccccCCCCccchhh
Confidence            999999999999       7754  677777777765443

>KOG0505 consensus Myosin phosphatase, regulatory subunit [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=99.63  E-value=1.8e-15  Score=122.62  Aligned_cols=125  Identities=33%  Similarity=0.550  Sum_probs=112.0

Q ss_pred             HHhhhhcccCCCCChHHHHHHHcCCHHHHHHHHHCCCCcccccc------------------------------------
Q 028370           23 RFFRSVIDTDDRGWTPLHIGARKGDIKLVKQLLDEGMDVNVAAW------------------------------------   66 (210)
Q Consensus        23 ~~~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~------------------------------------   66 (210)
                      .+..+++.+|..|+||||.|+-.|+..++++|++.|++.....-                                    
T Consensus        94 e~ga~Vn~~d~e~wtPlhaaascg~~~i~~~li~~gA~~~avNsdg~~P~dl~e~ea~~~~l~~~~~r~gi~iea~R~~~  173 (527)
T KOG0505|consen   94 ENGANVNAQDNEGWTPLHAAASCGYLNIVEYLIQHGANLLAVNSDGNMPYDLAEDEATLDVLETEMARQGIDIEAARKAE  173 (527)
T ss_pred             HhcCCccccccccCCcchhhcccccHHHHHHHHHhhhhhhhccCCCCCccccccCcchhHHHHHHHHHhcccHHHHhhhh
Confidence            45778899999999999999999999999999999886654430                                    


Q ss_pred             -------------------CCCCCCCcHHHHHHHCCcHHHHHHHHHcCCCCCcccCCCCCChHHHHHHhcCCHHHHHHHH
Q 028370           67 -------------------GPKSKGVTPLHLAAQGGHLEVMDVLLERGADIDARTKGACGWTPLHTAAKERKKEAVRFLI  127 (210)
Q Consensus        67 -------------------~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll  127 (210)
                                         .+...|-|.||.|+..|..++.++|+..|.+++.++.+  |+||||.|+.-|..+++++|+
T Consensus       174 e~~ml~D~~q~l~~G~~~d~~~~rG~T~lHvAaa~Gy~e~~~lLl~ag~~~~~~D~d--gWtPlHAAA~Wg~~~~~elL~  251 (527)
T KOG0505|consen  174 EQTMLDDARQWLNAGAELDARHARGATALHVAAANGYTEVAALLLQAGYSVNIKDYD--GWTPLHAAAHWGQEDACELLV  251 (527)
T ss_pred             HHHHHHHHHHHHhccccccccccccchHHHHHHhhhHHHHHHHHHHhccCccccccc--CCCcccHHHHhhhHhHHHHHH
Confidence                               13334889999999999999999999999999999998  999999999999999999999


Q ss_pred             HcCCCCCCCCCCCCCCCccccccc
Q 028370          128 ENGAFLPDDINDSRFNPPLHYCPS  151 (210)
Q Consensus       128 ~~g~~~~~~~~~~~g~t~l~~a~~  151 (210)
                      ++|+++  +.....|+||+++|..
T Consensus       252 ~~ga~~--d~~t~~g~~p~dv~de  273 (527)
T KOG0505|consen  252 EHGADM--DAKTKMGETPLDVADE  273 (527)
T ss_pred             Hhhccc--chhhhcCCCCccchhh
Confidence            999966  8999999999999974

>PF12796 Ank_2: Ankyrin repeats (3 copies); InterPro: IPR020683 This entry represents the ankyrin repeat-containing domain

Probab=99.62  E-value=2e-15  Score=98.23  Aligned_cols=82  Identities=43%  Similarity=0.613  Sum_probs=72.8

Q ss_pred             HHHHHHCCcHHHHHHHHHcCCCCCcccCCCCCChHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCCCCCcccccccchHH
Q 028370           76 LHLAAQGGHLEVMDVLLERGADIDARTKGACGWTPLHTAAKERKKEAVRFLIENGAFLPDDINDSRFNPPLHYCPSLEWA  155 (210)
Q Consensus        76 L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~g~t~l~~a~~~~~~  155 (210)
                      ||+|+..|+.+++++|++.+.+++.      |+||||+|+..|+.+++++|+++|+++  +.++.+|.||||+|+..  +
T Consensus         1 L~~A~~~~~~~~~~~ll~~~~~~~~------~~~~l~~A~~~~~~~~~~~Ll~~g~~~--~~~~~~g~t~L~~A~~~--~   70 (89)
T PF12796_consen    1 LHIAAQNGNLEILKFLLEKGADINL------GNTALHYAAENGNLEIVKLLLENGADI--NSQDKNGNTALHYAAEN--G   70 (89)
T ss_dssp             HHHHHHTTTHHHHHHHHHTTSTTTS------SSBHHHHHHHTTTHHHHHHHHHTTTCT--T-BSTTSSBHHHHHHHT--T
T ss_pred             CHHHHHcCCHHHHHHHHHCcCCCCC------CCCHHHHHHHcCCHHHHHHHHHhcccc--cccCCCCCCHHHHHHHc--C
Confidence            7999999999999999999888764      679999999999999999999999965  88899999999999954  4


Q ss_pred             HHHHHHHhhhhh
Q 028370          156 YEEMMRFQRESF  167 (210)
Q Consensus       156 ~~~~~~~l~~~~  167 (210)
                      ..+++++|.+..
T Consensus        71 ~~~~~~~Ll~~g   82 (89)
T PF12796_consen   71 NLEIVKLLLEHG   82 (89)
T ss_dssp             HHHHHHHHHHTT
T ss_pred             CHHHHHHHHHcC
Confidence            588999988763

These domains contain multiple repeats of a beta(2)-alpha(2) motif. The ankyrin repeat is one of the most common protein-protein interaction motifs in nature. Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].; PDB: 3AAA_C 3F6Q_A 2KBX_A 3IXE_A 3TWR_D 3TWV_A 3TWT_B 3TWQ_A 3TWS_A 3TWX_B ....

>PF13637 Ank_4: Ankyrin repeats (many copies); PDB: 3B95_A 3B7B_A 3F6Q_A 2KBX_A 3IXE_A 2DWZ_C 2DVW_A 3AJI_A 1S70_B 2HE0_A

Probab=99.57  E-value=1e-14  Score=85.76  Aligned_cols=54  Identities=54%  Similarity=0.876  Sum_probs=30.3

Q ss_pred             CCcHHHHHHHCCcHHHHHHHHHcCCCCCcccCCCCCChHHHHHHhcCCHHHHHHHH
Q 028370           72 GVTPLHLAAQGGHLEVMDVLLERGADIDARTKGACGWTPLHTAAKERKKEAVRFLI  127 (210)
Q Consensus        72 g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll  127 (210)
                      |.||||+|+..|+.+++++|++.|++++.++.+  |+||||+|+..|+.+++++|+
T Consensus         1 g~t~lh~A~~~g~~~~~~~Ll~~~~din~~d~~--g~t~lh~A~~~g~~~~~~~Ll   54 (54)
T PF13637_consen    1 GRTPLHWAARSGNLEIVKLLLEHGADINAQDED--GRTPLHYAAKNGNIDIVKFLL   54 (54)
T ss_dssp             SSBHHHHHHHTT-HHHHHHHHHTTSGTT-B-TT--S--HHHHHHHTT-HHHHHHHH
T ss_pred             CChHHHHHHHhCCHHHHHHHHHCCCCCCCCCCC--CCCHHHHHHHccCHHHHHHHC
Confidence            456666666666666666666666666666554  666666666666666666654

...

>PF13637 Ank_4: Ankyrin repeats (many copies); PDB: 3B95_A 3B7B_A 3F6Q_A 2KBX_A 3IXE_A 2DWZ_C 2DVW_A 3AJI_A 1S70_B 2HE0_A

Probab=99.55  E-value=1.7e-14  Score=84.84  Aligned_cols=54  Identities=46%  Similarity=0.860  Sum_probs=46.4

Q ss_pred             CChHHHHHHHcCCHHHHHHHHHCCCCccccccCCCCCCCcHHHHHHHCCcHHHHHHHH
Q 028370           35 GWTPLHIGARKGDIKLVKQLLDEGMDVNVAAWGPKSKGVTPLHLAAQGGHLEVMDVLL   92 (210)
Q Consensus        35 g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll   92 (210)
                      |+||||+|++.|+.+++++|++.|++++..    |.+|.||||+|+..|+.+++++|+
T Consensus         1 g~t~lh~A~~~g~~~~~~~Ll~~~~din~~----d~~g~t~lh~A~~~g~~~~~~~Ll   54 (54)
T PF13637_consen    1 GRTPLHWAARSGNLEIVKLLLEHGADINAQ----DEDGRTPLHYAAKNGNIDIVKFLL   54 (54)
T ss_dssp             SSBHHHHHHHTT-HHHHHHHHHTTSGTT-B-----TTS--HHHHHHHTT-HHHHHHHH
T ss_pred             CChHHHHHHHhCCHHHHHHHHHCCCCCCCC----CCCCCCHHHHHHHccCHHHHHHHC
Confidence            789999999999999999999999999988    999999999999999999999986

...

>KOG1710 consensus MYND Zn-finger and ankyrin repeat protein [General function prediction only]

Probab=99.54  E-value=9.1e-14  Score=105.23  Aligned_cols=100  Identities=33%  Similarity=0.395  Sum_probs=88.2

Q ss_pred             hhhhcccCCCCChHHHHHHHcCCHHHHHHHHHCCCCccccccCCCCCCCcHHHHHHHCCcHHHHHHHHHcCCCCCcccCC
Q 028370           25 FRSVIDTDDRGWTPLHIGARKGDIKLVKQLLDEGMDVNVAAWGPKSKGVTPLHLAAQGGHLEVMDVLLERGADIDARTKG  104 (210)
Q Consensus        25 ~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~  104 (210)
                      ++..+..|..|.|+|..|+++|+.++++.|++.|+|+|...   +..+.||||+|+.+|+.++.++|++.|+.....+.-
T Consensus        35 vr~vn~~D~sGMs~LahAaykGnl~~v~lll~~gaDvN~~q---hg~~YTpLmFAALSGn~dvcrllldaGa~~~~vNsv  111 (396)
T KOG1710|consen   35 VRQVNQRDPSGMSVLAHAAYKGNLTLVELLLELGADVNDKQ---HGTLYTPLMFAALSGNQDVCRLLLDAGARMYLVNSV  111 (396)
T ss_pred             hhhhhccCCCcccHHHHHHhcCcHHHHHHHHHhCCCcCccc---ccccccHHHHHHHcCCchHHHHHHhccCccccccch
Confidence            56678899999999999999999999999999999998764   677889999999999999999999999988877766


Q ss_pred             CCCChHHHHHHhcCCHHHHHHHHHc
Q 028370          105 ACGWTPLHTAAKERKKEAVRFLIEN  129 (210)
Q Consensus       105 ~~g~tpL~~A~~~g~~~~v~~Ll~~  129 (210)
                        |+|+-.+|+.-|+.+||.++-.+
T Consensus       112 --grTAaqmAAFVG~H~CV~iINN~  134 (396)
T KOG1710|consen  112 --GRTAAQMAAFVGHHECVAIINNH  134 (396)
T ss_pred             --hhhHHHHHHHhcchHHHHHHhcc
Confidence              99999999999999998877554

>PF13857 Ank_5: Ankyrin repeats (many copies); PDB: 1SW6_A 3EHR_B 3EHQ_A

Probab=99.52  E-value=8.1e-15  Score=86.75  Aligned_cols=50  Identities=46%  Similarity=0.641  Sum_probs=17.2

Q ss_pred             CCCCcccCCCCCChHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCCCCCccccc
Q 028370           96 ADIDARTKGACGWTPLHTAAKERKKEAVRFLIENGAFLPDDINDSRFNPPLHYC  149 (210)
Q Consensus        96 ~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~g~t~l~~a  149 (210)
                      ++++.++..  |+||||+|+..|+.+++++|++.|+++  +.+|..|+||+|+|
T Consensus         7 ~~~n~~d~~--G~T~LH~A~~~g~~~~v~~Ll~~g~d~--~~~d~~G~Tpl~~A   56 (56)
T PF13857_consen    7 ADVNAQDKY--GNTPLHWAARYGHSEVVRLLLQNGADP--NAKDKDGQTPLHYA   56 (56)
T ss_dssp             --TT---TT--S--HHHHHHHHT-HHHHHHHHHCT--T--T---TTS--HHHH-
T ss_pred             CCCcCcCCC--CCcHHHHHHHcCcHHHHHHHHHCcCCC--CCCcCCCCCHHHhC
Confidence            444444443  555555555555555555555555533  55555555555543

>KOG4214 consensus Myotrophin and similar proteins [Transcription]

Probab=99.52  E-value=5.7e-14  Score=88.85  Aligned_cols=94  Identities=26%  Similarity=0.418  Sum_probs=75.8

Q ss_pred             chhHHHHHHhhHHHhhhhcccCCCCChHHHHHHHcCCHHHHHHHHHCCCCccccccCCCCCCCcHHHHHHHCCcHHHHHH
Q 028370           11 GPFTLQRKASRKRFFRSVIDTDDRGWTPLHIGARKGDIKLVKQLLDEGMDVNVAAWGPKSKGVTPLHLAAQGGHLEVMDV   90 (210)
Q Consensus        11 ~~~~~~~~~~~~~~~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~   90 (210)
                      |.+..+...-.+.  .+.+.+ ..|++|||+|+-.|+++++++|+..|++++..    |..|.|||..|++.||.++|++
T Consensus        13 G~~DeVk~~v~~g--~nVn~~-~ggR~plhyAAD~GQl~ilefli~iGA~i~~k----DKygITPLLsAvwEGH~~cVkl   85 (117)
T KOG4214|consen   13 GEIDEVKQSVNEG--LNVNEI-YGGRTPLHYAADYGQLSILEFLISIGANIQDK----DKYGITPLLSAVWEGHRDCVKL   85 (117)
T ss_pred             CcHHHHHHHHHcc--ccHHHH-hCCcccchHhhhcchHHHHHHHHHhccccCCc----cccCCcHHHHHHHHhhHHHHHH
Confidence            4555555443333  122222 27999999999999999999999999999988    9999999999999999999999


Q ss_pred             HHHcCCCCCcccCCCCCChHHHH
Q 028370           91 LLERGADIDARTKGACGWTPLHT  113 (210)
Q Consensus        91 Ll~~g~~~~~~~~~~~g~tpL~~  113 (210)
                      |+++|++-.....+  |.+.+-.
T Consensus        86 LL~~GAdrt~~~Pd--G~~~~ea  106 (117)
T KOG4214|consen   86 LLQNGADRTIHAPD--GTALIEA  106 (117)
T ss_pred             HHHcCcccceeCCC--chhHHhh
Confidence            99999998888777  7655443

>KOG0507 consensus CASK-interacting adaptor protein (caskin) and related proteins with ankyrin repeats and SAM domain [Signal transduction mechanisms]

Probab=99.51  E-value=7.9e-14  Score=117.29  Aligned_cols=137  Identities=31%  Similarity=0.305  Sum_probs=110.0

Q ss_pred             hhcccCCCCChHHHHHHHcCCHHHHHHHHHCCCCccccccCCCCCCCcHHHHHHHCCcHHHHHHHHHcCCCCCcccCCCC
Q 028370           27 SVIDTDDRGWTPLHIGARKGDIKLVKQLLDEGMDVNVAAWGPKSKGVTPLHLAAQGGHLEVMDVLLERGADIDARTKGAC  106 (210)
Q Consensus        27 ~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~~  106 (210)
                      .+.-.|..|.+|||+|+..|+.++++.++..+..+|..    +..|.||||.|+..|+.+++.+|+.+|+++-+.+..  
T Consensus        74 ~ldl~d~kg~~plhlaaw~g~~e~vkmll~q~d~~na~----~~e~~tplhlaaqhgh~dvv~~Ll~~~adp~i~nns--  147 (854)
T KOG0507|consen   74 LLDLCDTKGILPLHLAAWNGNLEIVKMLLLQTDILNAV----NIENETPLHLAAQHGHLEVVFYLLKKNADPFIRNNS--  147 (854)
T ss_pred             hhhhhhccCcceEEehhhcCcchHHHHHHhcccCCCcc----cccCcCccchhhhhcchHHHHHHHhcCCCccccCcc--
Confidence            34457788999999999999999999999888777777    788999999999999999999999999998877766  


Q ss_pred             CChHHHHHHhcCCHHHHHHHHHcCCC------CCCCCCCCCCCCcccccccchHHHHHHHHHhhhhhhcCC
Q 028370          107 GWTPLHTAAKERKKEAVRFLIENGAF------LPDDINDSRFNPPLHYCPSLEWAYEEMMRFQRESFSAGE  171 (210)
Q Consensus       107 g~tpL~~A~~~g~~~~v~~Ll~~g~~------~~~~~~~~~g~t~l~~a~~~~~~~~~~~~~l~~~~~~~~  171 (210)
                      +.|+|..|++.|..++++.|++..-.      ++...+...+.+|+|.|+  .++..++++.+++......
T Consensus       148 ~~t~ldlA~qfgr~~Vvq~ll~~~~~~~~~~~~~~~~~~~~~~~plHlaa--kngh~~~~~~ll~ag~din  216 (854)
T KOG0507|consen  148 KETVLDLASRFGRAEVVQMLLQKKFPVQSSLRVGDIKRPFPAIYPLHLAA--KNGHVECMQALLEAGFDIN  216 (854)
T ss_pred             cccHHHHHHHhhhhHHHHHHhhhccchhhcccCCCCCCCCCCcCCcchhh--hcchHHHHHHHHhcCCCcc
Confidence            88999999999999999998886221      112455667788999988  4455788888887655543

>PF13857 Ank_5: Ankyrin repeats (many copies); PDB: 1SW6_A 3EHR_B 3EHQ_A

Probab=99.51  E-value=2.2e-14  Score=84.91  Aligned_cols=55  Identities=55%  Similarity=0.789  Sum_probs=21.3

Q ss_pred             HHHCC-CCccccccCCCCCCCcHHHHHHHCCcHHHHHHHHHcCCCCCcccCCCCCChHHHHH
Q 028370           54 LLDEG-MDVNVAAWGPKSKGVTPLHLAAQGGHLEVMDVLLERGADIDARTKGACGWTPLHTA  114 (210)
Q Consensus        54 Ll~~g-~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~~g~tpL~~A  114 (210)
                      |+++| ++++..    |..|.||||+|+..|+.+++++|++.|++++.++..  |.||||+|
T Consensus         1 LL~~~~~~~n~~----d~~G~T~LH~A~~~g~~~~v~~Ll~~g~d~~~~d~~--G~Tpl~~A   56 (56)
T PF13857_consen    1 LLEHGPADVNAQ----DKYGNTPLHWAARYGHSEVVRLLLQNGADPNAKDKD--GQTPLHYA   56 (56)
T ss_dssp             -----T--TT-------TTS--HHHHHHHHT-HHHHHHHHHCT--TT---TT--S--HHHH-
T ss_pred             CCccCcCCCcCc----CCCCCcHHHHHHHcCcHHHHHHHHHCcCCCCCCcCC--CCCHHHhC
Confidence            34445 455555    566666666666666666666666666666666555  66666654

>cd00204 ANK ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins

Probab=99.49  E-value=1.1e-12  Score=89.79  Aligned_cols=93  Identities=49%  Similarity=0.831  Sum_probs=85.8

Q ss_pred             cccCCCCChHHHHHHHcCCHHHHHHHHHCCCCccccccCCCCCCCcHHHHHHHCCcHHHHHHHHHcCCCCCcccCCCCCC
Q 028370           29 IDTDDRGWTPLHIGARKGDIKLVKQLLDEGMDVNVAAWGPKSKGVTPLHLAAQGGHLEVMDVLLERGADIDARTKGACGW  108 (210)
Q Consensus        29 ~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~~g~  108 (210)
                      +..+..|.||+|.|+..++.+++++|++.+++++..    +..|.||+|+|+..++.+++++|++.+.+++..+..  |.
T Consensus        34 ~~~~~~g~~~l~~a~~~~~~~~~~~ll~~~~~~~~~----~~~~~~~l~~a~~~~~~~~~~~L~~~~~~~~~~~~~--~~  107 (126)
T cd00204          34 NAKDNDGRTPLHLAAKNGHLEIVKLLLEKGADVNAR----DKDGNTPLHLAARNGNLDVVKLLLKHGADVNARDKD--GR  107 (126)
T ss_pred             CccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCcccc----CCCCCCHHHHHHHcCcHHHHHHHHHcCCCCcccCCC--CC
Confidence            578889999999999999999999999999877776    788999999999999999999999999888887766  89


Q ss_pred             hHHHHHHhcCCHHHHHHHH
Q 028370          109 TPLHTAAKERKKEAVRFLI  127 (210)
Q Consensus       109 tpL~~A~~~g~~~~v~~Ll  127 (210)
                      ||+++|...++.+++++|+
T Consensus       108 ~~l~~~~~~~~~~~~~~Ll  126 (126)
T cd00204         108 TPLHLAAKNGHLEVVKLLL  126 (126)
T ss_pred             CHHHHHHhcCCHHHHHHhC
Confidence            9999999999999999884

The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other types of domains. The structural repeat unit contains two antiparallel helices and a beta-hairpin, repeats are stacked in a superhelical arrangement; this alignment contains 4 consecutive repeats.

>KOG1710 consensus MYND Zn-finger and ankyrin repeat protein [General function prediction only]

Probab=99.49  E-value=1.6e-13  Score=103.94  Aligned_cols=121  Identities=26%  Similarity=0.351  Sum_probs=104.4

Q ss_pred             CChHHHHHHHcCCHHHHHHHHHCCCCccccccCCCCCCCcHHHHHHHCCcHHHHHHHHHcCCCCCcccCCCCCChHHHHH
Q 028370           35 GWTPLHIGARKGDIKLVKQLLDEGMDVNVAAWGPKSKGVTPLHLAAQGGHLEVMDVLLERGADIDARTKGACGWTPLHTA  114 (210)
Q Consensus        35 g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~~g~tpL~~A  114 (210)
                      -..||..++..++.+.+..|++.--+++.+    |..|.|+|..|+..|+.+++++|++.|+|+|...... +.||||+|
T Consensus        12 ~~~~Lle~i~Kndt~~a~~LLs~vr~vn~~----D~sGMs~LahAaykGnl~~v~lll~~gaDvN~~qhg~-~YTpLmFA   86 (396)
T KOG1710|consen   12 PKSPLLEAIDKNDTEAALALLSTVRQVNQR----DPSGMSVLAHAAYKGNLTLVELLLELGADVNDKQHGT-LYTPLMFA   86 (396)
T ss_pred             hhhHHHHHHccCcHHHHHHHHHHhhhhhcc----CCCcccHHHHHHhcCcHHHHHHHHHhCCCcCcccccc-cccHHHHH
Confidence            467999999999999999999886668877    9999999999999999999999999999999876543 88999999


Q ss_pred             HhcCCHHHHHHHHHcCCCCCCCCCCCCCCCcccccccchHHHHHHHHHhh
Q 028370          115 AKERKKEAVRFLIENGAFLPDDINDSRFNPPLHYCPSLEWAYEEMMRFQR  164 (210)
Q Consensus       115 ~~~g~~~~v~~Ll~~g~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~~~l~  164 (210)
                      +.+|+.+++++|++.|+..  ...|.-|.|+-++|+-.  +..+.+..+.
T Consensus        87 ALSGn~dvcrllldaGa~~--~~vNsvgrTAaqmAAFV--G~H~CV~iIN  132 (396)
T KOG1710|consen   87 ALSGNQDVCRLLLDAGARM--YLVNSVGRTAAQMAAFV--GHHECVAIIN  132 (396)
T ss_pred             HHcCCchHHHHHHhccCcc--ccccchhhhHHHHHHHh--cchHHHHHHh
Confidence            9999999999999999955  88999999999998833  3344444433

>KOG3676 consensus Ca2+-permeable cation channel OSM-9 and related channels (OTRPC family) [Inorganic ion transport and metabolism; Signal transduction mechanisms]

Probab=99.48  E-value=2e-13  Score=115.77  Aligned_cols=146  Identities=27%  Similarity=0.245  Sum_probs=114.5

Q ss_pred             hhHHHhhhhcccCCCCChHHHHHHHc---CCHHHHHHHHHCCCCccccc-cCCCCCCCcHHHHHHHCCcHHHHHHHHHcC
Q 028370           20 SRKRFFRSVIDTDDRGWTPLHIGARK---GDIKLVKQLLDEGMDVNVAA-WGPKSKGVTPLHLAAQGGHLEVMDVLLERG   95 (210)
Q Consensus        20 ~~~~~~~~~~~~d~~g~t~L~~A~~~---g~~~~v~~Ll~~g~~~~~~~-~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g   95 (210)
                      .++...-+++.+-..|.|.||.|.-+   ++.++++.|++.-+...... -+-...|.||||+|+.+.+.++|++|++.|
T Consensus       128 k~r~~~w~~~~RGa~GET~Lh~~lL~~~~~~n~la~~LL~~~p~lind~~~~eeY~GqSaLHiAIv~~~~~~V~lLl~~g  207 (782)
T KOG3676|consen  128 KYRLTDWKLNERGATGETLLHKALLNLSDGHNELARVLLEIFPKLINDIYTSEEYYGQSALHIAIVNRDAELVRLLLAAG  207 (782)
T ss_pred             hhhhhhhccccccchhhhHHHHHHhcCchhHHHHHHHHHHHhHHHhhhhhhhHhhcCcchHHHHHHhccHHHHHHHHHcC
Confidence            34445566666777899999999985   45588999998754221100 000456999999999999999999999999


Q ss_pred             CCCCcccCC---------------------CCCChHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCCCCCcccccccchH
Q 028370           96 ADIDARTKG---------------------ACGWTPLHTAAKERKKEAVRFLIENGAFLPDDINDSRFNPPLHYCPSLEW  154 (210)
Q Consensus        96 ~~~~~~~~~---------------------~~g~tpL~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~g~t~l~~a~~~~~  154 (210)
                      +|++.+...                     ..|+.||.+|+-.++.+|+++|+++|+|+  +.+|..|+|.||.++  -.
T Consensus       208 ADV~aRa~G~FF~~~dqk~~rk~T~Y~G~~YfGEyPLSfAAC~nq~eivrlLl~~gAd~--~aqDS~GNTVLH~lV--i~  283 (782)
T KOG3676|consen  208 ADVHARACGAFFCPDDQKASRKSTNYTGYFYFGEYPLSFAACTNQPEIVRLLLAHGADP--NAQDSNGNTVLHMLV--IH  283 (782)
T ss_pred             CchhhHhhccccCcccccccccccCCcceeeeccCchHHHHHcCCHHHHHHHHhcCCCC--CccccCCChHHHHHH--HH
Confidence            999876321                     24889999999999999999999999965  999999999999988  44


Q ss_pred             HHHHHHHHhhhhhhc
Q 028370          155 AYEEMMRFQRESFSA  169 (210)
Q Consensus       155 ~~~~~~~~l~~~~~~  169 (210)
                      -..++.+.+.+....
T Consensus       284 ~~~~My~~~L~~ga~  298 (782)
T KOG3676|consen  284 FVTEMYDLALELGAN  298 (782)
T ss_pred             HHHHHHHHHHhcCCC
Confidence            567787777776555

>COG0666 Arp FOG: Ankyrin repeat [General function prediction only]

Probab=99.45  E-value=5.4e-13  Score=100.54  Aligned_cols=99  Identities=40%  Similarity=0.621  Sum_probs=91.0

Q ss_pred             hhhcccCCCCChHHHHHHHcCC-----HHHHHHHHHCCC---CccccccCCCCCCCcHHHHHHHCCcHHHHHHHHHcCCC
Q 028370           26 RSVIDTDDRGWTPLHIGARKGD-----IKLVKQLLDEGM---DVNVAAWGPKSKGVTPLHLAAQGGHLEVMDVLLERGAD   97 (210)
Q Consensus        26 ~~~~~~d~~g~t~L~~A~~~g~-----~~~v~~Ll~~g~---~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~   97 (210)
                      .+++.+|..|.||||+|+..++     .++++.|++.|+   ..+..    +..|.||||+|+..|+.+++++|+..|++
T Consensus        97 ~~~~~~~~~g~t~l~~a~~~~~~~~~~~~~~~~ll~~g~~~~~~~~~----~~~g~tpl~~A~~~~~~~~~~~ll~~~~~  172 (235)
T COG0666          97 ADVNAKDADGDTPLHLAALNGNPPEGNIEVAKLLLEAGADLDVNNLR----DEDGNTPLHWAALNGDADIVELLLEAGAD  172 (235)
T ss_pred             CCcccccCCCCcHHHHHHhcCCcccchHHHHHHHHHcCCCCCCcccc----CCCCCchhHHHHHcCchHHHHHHHhcCCC
Confidence            3447899999999999999999     999999999999   44455    89999999999999999999999999999


Q ss_pred             CCcccCCCCCChHHHHHHhcCCHHHHHHHHHcC
Q 028370           98 IDARTKGACGWTPLHTAAKERKKEAVRFLIENG  130 (210)
Q Consensus        98 ~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~g  130 (210)
                      ++..+..  |.|++++|+..++.++++.++..+
T Consensus       173 ~~~~~~~--g~t~l~~a~~~~~~~~~~~l~~~~  203 (235)
T COG0666         173 PNSRNSY--GVTALDPAAKNGRIELVKLLLDKG  203 (235)
T ss_pred             CcccccC--CCcchhhhcccchHHHHHHHHhcC
Confidence            9988766  999999999999999999999976

>KOG0515 consensus p53-interacting protein 53BP/ASPP, contains ankyrin and SH3 domains [Cell cycle control, cell division, chromosome partitioning]

Probab=99.36  E-value=3.1e-12  Score=103.99  Aligned_cols=113  Identities=28%  Similarity=0.348  Sum_probs=95.8

Q ss_pred             chhHHHHHHhhHHHhhhhcccCCCCChHHHHHHHcCCHHHHHHHHHCCCCccccccCCCCCCCcHHHHHHHCCcHHHHHH
Q 028370           11 GPFTLQRKASRKRFFRSVIDTDDRGWTPLHIGARKGDIKLVKQLLDEGMDVNVAAWGPKSKGVTPLHLAAQGGHLEVMDV   90 (210)
Q Consensus        11 ~~~~~~~~~~~~~~~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~   90 (210)
                      |.|.++.+.-.+  +.+....|..|.|+||-|+-.|+.++|++|++.|+++|..    |.+||||||.|+..++..+++.
T Consensus       561 GEldlVq~~i~e--v~DpSqpNdEGITaLHNAiCaghyeIVkFLi~~ganVNa~----DSdGWTPLHCAASCNnv~~ckq  634 (752)
T KOG0515|consen  561 GELDLVQRIIYE--VTDPSQPNDEGITALHNAICAGHYEIVKFLIEFGANVNAA----DSDGWTPLHCAASCNNVPMCKQ  634 (752)
T ss_pred             chHHHHHHHHHh--hcCCCCCCccchhHHhhhhhcchhHHHHHHHhcCCcccCc----cCCCCchhhhhhhcCchHHHHH
Confidence            667777765543  4567789999999999999999999999999999999998    9999999999999999999999


Q ss_pred             HHHcCCCCCcccCCCCCChHHHHH--HhcCCHHHHHHHHHcC
Q 028370           91 LLERGADIDARTKGACGWTPLHTA--AKERKKEAVRFLIENG  130 (210)
Q Consensus        91 Ll~~g~~~~~~~~~~~g~tpL~~A--~~~g~~~~v~~Ll~~g  130 (210)
                      |++.|+-+-..+.. ++.|+..-+  -..|..+|.++|....
T Consensus       635 LVe~GaavfAsTlS-DmeTa~eKCee~eeGY~~CsqyL~~vq  675 (752)
T KOG0515|consen  635 LVESGAAVFASTLS-DMETAAEKCEEMEEGYDQCSQYLYGVQ  675 (752)
T ss_pred             HHhccceEEeeecc-cccchhhhcchhhhhHHHHHHHHHHHH
Confidence            99999887665433 388887665  4567899999997653

>KOG4369 consensus RTK signaling protein MASK/UNC-44 [Signal transduction mechanisms]

Probab=99.33  E-value=9.5e-13  Score=114.89  Aligned_cols=131  Identities=25%  Similarity=0.304  Sum_probs=116.7

Q ss_pred             cCCCCChHHHHHHHcCCHHHHHHHHHCCCCccccccCCCCCCCcHHHHHHHCCcHHHHHHHHHcCCCCCcccCCCCCChH
Q 028370           31 TDDRGWTPLHIGARKGDIKLVKQLLDEGMDVNVAAWGPKSKGVTPLHLAAQGGHLEVMDVLLERGADIDARTKGACGWTP  110 (210)
Q Consensus        31 ~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~~g~tp  110 (210)
                      ....-.|+|..||..|+.|.+++|+.+|+++..+    |..|-+||.+|+-.||..+|+.|+.+.++++.+. +..+.|+
T Consensus       753 Te~n~~t~LT~acaggh~e~vellv~rganiehr----dkkgf~plImaatagh~tvV~~llk~ha~veaQs-drtkdt~  827 (2131)
T KOG4369|consen  753 TEPNIKTNLTSACAGGHREEVELLVVRGANIEHR----DKKGFVPLIMAATAGHITVVQDLLKAHADVEAQS-DRTKDTM  827 (2131)
T ss_pred             cCccccccccccccCccHHHHHHHHHhccccccc----ccccchhhhhhcccCchHHHHHHHhhhhhhhhhc-ccccCce
Confidence            3445679999999999999999999999999888    9999999999999999999999999999998874 3448999


Q ss_pred             HHHHHhcCCHHHHHHHHHcCCCCCCCCCCCCCCCcccccccchHHHHHHHHHhhhhhhcC
Q 028370          111 LHTAAKERKKEAVRFLIENGAFLPDDINDSRFNPPLHYCPSLEWAYEEMMRFQRESFSAG  170 (210)
Q Consensus       111 L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~~~l~~~~~~~  170 (210)
                      |.+||..|+.++|++|+.+|+  +...++....|||.+|.  ..++.+|+..+.....+.
T Consensus       828 lSlacsggr~~vvelLl~~ga--nkehrnvsDytPlsla~--Sggy~~iI~~llS~GseI  883 (2131)
T KOG4369|consen  828 LSLACSGGRTRVVELLLNAGA--NKEHRNVSDYTPLSLAR--SGGYTKIIHALLSSGSEI  883 (2131)
T ss_pred             EEEecCCCcchHHHHHHHhhc--cccccchhhcCchhhhc--CcchHHHHHHHhhccccc
Confidence            999999999999999999999  66888999999999998  456789999888877553

>PTZ00322 6-phosphofructo-2-kinase/fructose-2,6-biphosphatase; Provisional

Probab=99.30  E-value=7e-12  Score=109.15  Aligned_cols=86  Identities=29%  Similarity=0.378  Sum_probs=78.4

Q ss_pred             HHHHHHHCCcHHHHHHHHHcCCCCCcccCCCCCChHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCCCCCcccccccchH
Q 028370           75 PLHLAAQGGHLEVMDVLLERGADIDARTKGACGWTPLHTAAKERKKEAVRFLIENGAFLPDDINDSRFNPPLHYCPSLEW  154 (210)
Q Consensus        75 ~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~g~t~l~~a~~~~~  154 (210)
                      .|+.|+..|+.+++++|+..|++++..+..  |.||||+|+..|+.+++++|+++|+++  +.+|..|.||||+|+..  
T Consensus        85 ~L~~aa~~G~~~~vk~LL~~Gadin~~d~~--G~TpLh~Aa~~g~~eiv~~LL~~Gadv--n~~d~~G~TpLh~A~~~--  158 (664)
T PTZ00322         85 ELCQLAASGDAVGARILLTGGADPNCRDYD--GRTPLHIACANGHVQVVRVLLEFGADP--TLLDKDGKTPLELAEEN--  158 (664)
T ss_pred             HHHHHHHcCCHHHHHHHHHCCCCCCCcCCC--CCcHHHHHHHCCCHHHHHHHHHCCCCC--CCCCCCCCCHHHHHHHC--
Confidence            588999999999999999999999998877  999999999999999999999999966  89999999999999954  


Q ss_pred             HHHHHHHHhhhh
Q 028370          155 AYEEMMRFQRES  166 (210)
Q Consensus       155 ~~~~~~~~l~~~  166 (210)
                      +..+++++|...
T Consensus       159 g~~~iv~~Ll~~  170 (664)
T PTZ00322        159 GFREVVQLLSRH  170 (664)
T ss_pred             CcHHHHHHHHhC
Confidence            457888888776

>KOG0818 consensus GTPase-activating proteins of the GIT family [Signal transduction mechanisms]

Probab=99.20  E-value=1.3e-10  Score=94.08  Aligned_cols=101  Identities=33%  Similarity=0.454  Sum_probs=88.6

Q ss_pred             HhhhhcccCCCCCh------HHHHHHHcCCHHHHHHHHHCCCCccccccCCCCCCCcHHHHHHHCCcHHHHHHHHHcCCC
Q 028370           24 FFRSVIDTDDRGWT------PLHIGARKGDIKLVKQLLDEGMDVNVAAWGPKSKGVTPLHLAAQGGHLEVMDVLLERGAD   97 (210)
Q Consensus        24 ~~~~~~~~d~~g~t------~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~   97 (210)
                      |+..+..+|.+|-+      -||.+++.|++++.-.|+..|+++|...   -..|.||||.|++.|+..-+++|+-+|+|
T Consensus       116 Fv~~~~~rDdD~~~~~~LsrQLhasvRt~nlet~LRll~lGA~~N~~h---pekg~TpLHvAAk~Gq~~Q~ElL~vYGAD  192 (669)
T KOG0818|consen  116 FVHRLPCRDDDSVTAKDLSKQLHSSVRTGNLETCLRLLSLGAQANFFH---PEKGNTPLHVAAKAGQILQAELLAVYGAD  192 (669)
T ss_pred             eeccCCCCCcchhhHHHHHHHHHHHhhcccHHHHHHHHHcccccCCCC---cccCCchhHHHHhccchhhhhHHhhccCC
Confidence            44445567888766      5899999999999999999999999873   46799999999999999999999999999


Q ss_pred             CCcccCCCCCChHHHHHHhcCCHHHHHHHHHc
Q 028370           98 IDARTKGACGWTPLHTAAKERKKEAVRFLIEN  129 (210)
Q Consensus        98 ~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~  129 (210)
                      ++..+..  |.||+.+|-..|+.++.+-|++.
T Consensus       193 ~~a~d~~--GmtP~~~AR~~gH~~laeRl~e~  222 (669)
T KOG0818|consen  193 PGAQDSS--GMTPVDYARQGGHHELAERLVEI  222 (669)
T ss_pred             CCCCCCC--CCcHHHHHHhcCchHHHHHHHHH
Confidence            9999988  99999999999998887766654

>KOG4369 consensus RTK signaling protein MASK/UNC-44 [Signal transduction mechanisms]

Probab=99.14  E-value=3.7e-11  Score=105.30  Aligned_cols=135  Identities=24%  Similarity=0.340  Sum_probs=99.2

Q ss_pred             hhcccCCCCChHHHHHHHcCCHHHHHHHHHCCCCccccccCCCCCCCcHHHHHHHCCcHHHHHHHHHcCCCCCcccCCCC
Q 028370           27 SVIDTDDRGWTPLHIGARKGDIKLVKQLLDEGMDVNVAAWGPKSKGVTPLHLAAQGGHLEVMDVLLERGADIDARTKGAC  106 (210)
Q Consensus        27 ~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~~  106 (210)
                      ++.-+|+.|.+||-.|+-.|+..+|..|+.+.+++....   |+.+.|+|.+||..|..++|++|+..|++-..++-.  
T Consensus       782 niehrdkkgf~plImaatagh~tvV~~llk~ha~veaQs---drtkdt~lSlacsggr~~vvelLl~~gankehrnvs--  856 (2131)
T KOG4369|consen  782 NIEHRDKKGFVPLIMAATAGHITVVQDLLKAHADVEAQS---DRTKDTMLSLACSGGRTRVVELLLNAGANKEHRNVS--  856 (2131)
T ss_pred             cccccccccchhhhhhcccCchHHHHHHHhhhhhhhhhc---ccccCceEEEecCCCcchHHHHHHHhhccccccchh--
Confidence            344478888888888888888888888888888877654   777788888888888888888888877766555544  


Q ss_pred             CChHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCCCCCcccccccchHHHHHHHHHhhhhhh
Q 028370          107 GWTPLHTAAKERKKEAVRFLIENGAFLPDDINDSRFNPPLHYCPSLEWAYEEMMRFQRESFS  168 (210)
Q Consensus       107 g~tpL~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~~~l~~~~~  168 (210)
                      ..|||.+|...|..++++.|+..|++|+...-.+.|-.||..|.-++  ..+-.+.+.+...
T Consensus       857 DytPlsla~Sggy~~iI~~llS~GseInSrtgSklgisPLmlatmng--h~~at~~ll~~gs  916 (2131)
T KOG4369|consen  857 DYTPLSLARSGGYTKIIHALLSSGSEINSRTGSKLGISPLMLATMNG--HQAATLSLLQPGS  916 (2131)
T ss_pred             hcCchhhhcCcchHHHHHHHhhcccccccccccccCcchhhhhhhcc--ccHHHHHHhcccc
Confidence            56888888888888888888888877766666677777777776433  3455555555433

>KOG0506 consensus Glutaminase (contains ankyrin repeat) [Amino acid transport and metabolism]

Probab=99.07  E-value=2.1e-10  Score=92.41  Aligned_cols=95  Identities=31%  Similarity=0.465  Sum_probs=84.9

Q ss_pred             cCCCCChHHHHHHHcCCHHHHHHHHHCCCCccccccCCCCCCCcHHHHHHHCCcHHHHHHHHH-cCCCCCcccCCCCCCh
Q 028370           31 TDDRGWTPLHIGARKGDIKLVKQLLDEGMDVNVAAWGPKSKGVTPLHLAAQGGHLEVMDVLLE-RGADIDARTKGACGWT  109 (210)
Q Consensus        31 ~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~-~g~~~~~~~~~~~g~t  109 (210)
                      ++.++..++++|++.|++..++.+.-.|.|+...    |.+.+|+||.|+..|+.+++++|++ .+.+++..+++  |+|
T Consensus       502 ~~~~~~i~~~~aa~~GD~~alrRf~l~g~D~~~~----DyD~RTaLHvAAaEG~v~v~kfl~~~~kv~~~~kDRw--~rt  575 (622)
T KOG0506|consen  502 RENDTVINVMYAAKNGDLSALRRFALQGMDLETK----DYDDRTALHVAAAEGHVEVVKFLLNACKVDPDPKDRW--GRT  575 (622)
T ss_pred             ccccchhhhhhhhhcCCHHHHHHHHHhccccccc----ccccchhheeecccCceeHHHHHHHHHcCCCChhhcc--CCC
Confidence            4556777899999999999999999999999988    9999999999999999999999998 57888888888  999


Q ss_pred             HHHHHHhcCCHHHHHHHHHcCC
Q 028370          110 PLHTAAKERKKEAVRFLIENGA  131 (210)
Q Consensus       110 pL~~A~~~g~~~~v~~Ll~~g~  131 (210)
                      ||.-|...++.+++++|-+.-.
T Consensus       576 PlDdA~~F~h~~v~k~L~~~~~  597 (622)
T KOG0506|consen  576 PLDDAKHFKHKEVVKLLEEAQY  597 (622)
T ss_pred             cchHhHhcCcHHHHHHHHHHhc
Confidence            9999999999999999987643

>KOG0783 consensus Uncharacterized conserved protein, contains ankyrin and BTB/POZ domains [Function unknown]

Probab=99.04  E-value=7.1e-11  Score=100.79  Aligned_cols=82  Identities=30%  Similarity=0.478  Sum_probs=41.5

Q ss_pred             hcccCCCCChHHHHHHHcCCHHHHHHHHHCCCCccccccCCCCCCCcHHHHHHHCCcHHHHHHHHHcCCCCCcccCCCCC
Q 028370           28 VIDTDDRGWTPLHIGARKGDIKLVKQLLDEGMDVNVAAWGPKSKGVTPLHLAAQGGHLEVMDVLLERGADIDARTKGACG  107 (210)
Q Consensus        28 ~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~~g  107 (210)
                      .+.+|..|+|+||.|+..+..+++++|+++|++++...   ...|+||||-|+..|+.+++-+|+.+|.++..+|.+  |
T Consensus        45 anikD~~GR~alH~~~S~~k~~~l~wLlqhGidv~vqD---~ESG~taLHRaiyyG~idca~lLL~~g~SL~i~Dke--g  119 (1267)
T KOG0783|consen   45 ANIKDRYGRTALHIAVSENKNSFLRWLLQHGIDVFVQD---EESGYTALHRAIYYGNIDCASLLLSKGRSLRIKDKE--G  119 (1267)
T ss_pred             hhHHHhhccceeeeeeccchhHHHHHHHhcCceeeecc---ccccchHhhHhhhhchHHHHHHHHhcCCceEEeccc--C
Confidence            34455555555555555555555555555555554442   233555555555555555555555555555444444  5


Q ss_pred             ChHHHHH
Q 028370          108 WTPLHTA  114 (210)
Q Consensus       108 ~tpL~~A  114 (210)
                      .+||..-
T Consensus       120 lsplq~~  126 (1267)
T KOG0783|consen  120 LSPLQFL  126 (1267)
T ss_pred             CCHHHHH
Confidence            5555443

>KOG0705 consensus GTPase-activating protein Centaurin gamma (contains Ras-like GTPase, PH and ankyrin repeat domains) [Signal transduction mechanisms]

Probab=99.03  E-value=2.3e-09  Score=88.37  Aligned_cols=117  Identities=26%  Similarity=0.307  Sum_probs=92.6

Q ss_pred             hHHHHHHhhHHHhhhhcccCCCCChHHHHHHHcCCHHHHHHHHHCCCCccccccCCCCCCCcHHHHHHHCCcHHHHHHHH
Q 028370           13 FTLQRKASRKRFFRSVIDTDDRGWTPLHIGARKGDIKLVKQLLDEGMDVNVAAWGPKSKGVTPLHLAAQGGHLEVMDVLL   92 (210)
Q Consensus        13 ~~~~~~~~~~~~~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll   92 (210)
                      -|+.+|+-.+.|..-+-.....=-.-|..|+...++..+-+|+.+|....+..-..+.+|+|+||.||+.|+..+.++|+
T Consensus       602 rwIr~KYeqklFLaPl~~te~~lgqqLl~A~~~~Dl~t~~lLLAhg~~~e~~~t~~~~~grt~LHLa~~~gnVvl~QLLi  681 (749)
T KOG0705|consen  602 RWIRAKYEQKLFLAPLPCTEEPLGQQLLRAVAAEDLQTAILLLAHGSREEVNETCGEGDGRTALHLAARKGNVVLAQLLI  681 (749)
T ss_pred             HHHHHHHHHHhhcCCCCCCCCchHHHHHHHHHHHHHHHHHHHHhccCchhhhccccCCCCcchhhhhhhhcchhHHHHHH
Confidence            35666666666666554444433345778888899999999999985332211111667899999999999999999999


Q ss_pred             HcCCCCCcccCCCCCChHHHHHHhcCCHHHHHHHHHcCC
Q 028370           93 ERGADIDARTKGACGWTPLHTAAKERKKEAVRFLIENGA  131 (210)
Q Consensus        93 ~~g~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~g~  131 (210)
                      =+|+|+...+..  |+|+|.||-+.|.-+|+..|+.+|+
T Consensus       682 Wyg~dv~~rda~--g~t~l~yar~a~sqec~d~llq~gc  718 (749)
T KOG0705|consen  682 WYGVDVMARDAH--GRTALFYARQAGSQECIDVLLQYGC  718 (749)
T ss_pred             HhCccceecccC--CchhhhhHhhcccHHHHHHHHHcCC
Confidence            999999888776  9999999999999999999999998

>KOG0783 consensus Uncharacterized conserved protein, contains ankyrin and BTB/POZ domains [Function unknown]

Probab=99.00  E-value=3.4e-10  Score=96.74  Aligned_cols=80  Identities=26%  Similarity=0.407  Sum_probs=75.7

Q ss_pred             CCCCCcHHHHHHHCCcHHHHHHHHHcCCCCCcccCCCCCChHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCCCCCcccc
Q 028370           69 KSKGVTPLHLAAQGGHLEVMDVLLERGADIDARTKGACGWTPLHTAAKERKKEAVRFLIENGAFLPDDINDSRFNPPLHY  148 (210)
Q Consensus        69 ~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~g~t~l~~  148 (210)
                      |..|+|+||+|+..+..++++||+++|+++..+|... |.||||-|+..|+++|+-+|+.+|+.+  .+.|.+|.+||++
T Consensus        49 D~~GR~alH~~~S~~k~~~l~wLlqhGidv~vqD~ES-G~taLHRaiyyG~idca~lLL~~g~SL--~i~Dkeglsplq~  125 (1267)
T KOG0783|consen   49 DRYGRTALHIAVSENKNSFLRWLLQHGIDVFVQDEES-GYTALHRAIYYGNIDCASLLLSKGRSL--RIKDKEGLSPLQF  125 (1267)
T ss_pred             HhhccceeeeeeccchhHHHHHHHhcCceeeeccccc-cchHhhHhhhhchHHHHHHHHhcCCce--EEecccCCCHHHH
Confidence            8999999999999999999999999999999998875 999999999999999999999999965  9999999999998


Q ss_pred             ccc
Q 028370          149 CPS  151 (210)
Q Consensus       149 a~~  151 (210)
                      .+.
T Consensus       126 ~~r  128 (1267)
T KOG0783|consen  126 LSR  128 (1267)
T ss_pred             Hhh
Confidence            764

>PF13606 Ank_3: Ankyrin repeat

Probab=98.93  E-value=1.7e-09  Score=55.03  Aligned_cols=28  Identities=57%  Similarity=0.952  Sum_probs=17.3

Q ss_pred             CChHHHHHHHcCCHHHHHHHHHCCCCcc
Q 028370           35 GWTPLHIGARKGDIKLVKQLLDEGMDVN   62 (210)
Q Consensus        35 g~t~L~~A~~~g~~~~v~~Ll~~g~~~~   62 (210)
                      |+||||+||+.|+.+++++|+++|+|++
T Consensus         2 G~T~Lh~A~~~g~~e~v~~Ll~~gadvn   29 (30)
T PF13606_consen    2 GNTPLHLAASNGNIEIVKYLLEHGADVN   29 (30)
T ss_pred             CCCHHHHHHHhCCHHHHHHHHHcCCCCC
Confidence            5666666666666666666666666554

>PF13606 Ank_3: Ankyrin repeat

Probab=98.86  E-value=4.2e-09  Score=53.60  Aligned_cols=27  Identities=48%  Similarity=0.706  Sum_probs=19.4

Q ss_pred             CChHHHHHHhcCCHHHHHHHHHcCCCC
Q 028370          107 GWTPLHTAAKERKKEAVRFLIENGAFL  133 (210)
Q Consensus       107 g~tpL~~A~~~g~~~~v~~Ll~~g~~~  133 (210)
                      |+||||+||..|+.+++++|+++|+++
T Consensus         2 G~T~Lh~A~~~g~~e~v~~Ll~~gadv   28 (30)
T PF13606_consen    2 GNTPLHLAASNGNIEIVKYLLEHGADV   28 (30)
T ss_pred             CCCHHHHHHHhCCHHHHHHHHHcCCCC
Confidence            667777777777777777777777754

>KOG0782 consensus Predicted diacylglycerol kinase [Signal transduction mechanisms]

Probab=98.82  E-value=9.3e-09  Score=84.92  Aligned_cols=117  Identities=21%  Similarity=0.329  Sum_probs=94.6

Q ss_pred             HHHHHHcCCHHHHHHHHHCCCCccccccCCCCCCCcHHHHHHHCCcHHHHHHHHHcCCC--CCcccCCCCCChHHHHHHh
Q 028370           39 LHIGARKGDIKLVKQLLDEGMDVNVAAWGPKSKGVTPLHLAAQGGHLEVMDVLLERGAD--IDARTKGACGWTPLHTAAK  116 (210)
Q Consensus        39 L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~--~~~~~~~~~g~tpL~~A~~  116 (210)
                      |..|+..+++--+.....+|.++...    +.+..+.||+|+..|+.++|++++++|..  +++-+..  |+|+||-|+.
T Consensus       870 il~av~~~D~~klqE~h~~gg~ll~~----~~~~~sllh~a~~tg~~eivkyildh~p~elld~~de~--get~lhkaa~  943 (1004)
T KOG0782|consen  870 ILRAVLSSDLMKLQETHLNGGSLLIQ----GPDHCSLLHYAAKTGNGEIVKYILDHGPSELLDMADET--GETALHKAAC  943 (1004)
T ss_pred             HHHHHHhccHHHHHHHHhcCCceEee----CcchhhHHHHHHhcCChHHHHHHHhcCCHHHHHHHhhh--hhHHHHHHHH
Confidence            56777888877777777888887777    77888999999999999999999999875  4555555  9999999999


Q ss_pred             cCCHHHHHHHHHcCCCCCCCCCCCCCCCcccccccchHHHHHHHHHhhh
Q 028370          117 ERKKEAVRFLIENGAFLPDDINDSRFNPPLHYCPSLEWAYEEMMRFQRE  165 (210)
Q Consensus       117 ~g~~~~v~~Ll~~g~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~~~l~~  165 (210)
                      .++..++++|++.|+.+  ..+|..|.||-.-|-..+  ..++..+|..
T Consensus       944 ~~~r~vc~~lvdagasl--~ktd~kg~tp~eraqqa~--d~dlaayle~  988 (1004)
T KOG0782|consen  944 QRNRAVCQLLVDAGASL--RKTDSKGKTPQERAQQAG--DPDLAAYLES  988 (1004)
T ss_pred             hcchHHHHHHHhcchhh--eecccCCCChHHHHHhcC--CchHHHHHhh
Confidence            99999999999999966  888999999988775322  2455555443

>PF00023 Ank: Ankyrin repeat Hereditary spherocytosis; InterPro: IPR002110 The ankyrin repeat is one of the most common protein-protein interaction motifs in nature

Probab=98.78  E-value=1.3e-08  Score=53.09  Aligned_cols=30  Identities=47%  Similarity=0.757  Sum_probs=17.6

Q ss_pred             CChHHHHHHHcCCHHHHHHHHHCCCCcccc
Q 028370           35 GWTPLHIGARKGDIKLVKQLLDEGMDVNVA   64 (210)
Q Consensus        35 g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~   64 (210)
                      |+||||+|+..|+.+++++|+++|++++.+
T Consensus         2 G~TpLh~A~~~~~~~~v~~Ll~~ga~~~~~   31 (33)
T PF00023_consen    2 GNTPLHYAAQRGHPDIVKLLLKHGADINAR   31 (33)
T ss_dssp             SBBHHHHHHHTTCHHHHHHHHHTTSCTTCB
T ss_pred             cccHHHHHHHHHHHHHHHHHHHCcCCCCCC
Confidence            556666666666666666666666555543

Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].; GO: 0005515 protein binding; PDB: 1D9S_A 1NFI_F 1IKN_D 1WDY_A 1OT8_C 1QYM_A 1TR4_A 1UOH_A 1N11_A 1K1A_A ....

>PF00023 Ank: Ankyrin repeat Hereditary spherocytosis; InterPro: IPR002110 The ankyrin repeat is one of the most common protein-protein interaction motifs in nature

Probab=98.77  E-value=1.6e-08  Score=52.73  Aligned_cols=27  Identities=41%  Similarity=0.660  Sum_probs=18.3

Q ss_pred             CChHHHHHHhcCCHHHHHHHHHcCCCC
Q 028370          107 GWTPLHTAAKERKKEAVRFLIENGAFL  133 (210)
Q Consensus       107 g~tpL~~A~~~g~~~~v~~Ll~~g~~~  133 (210)
                      |.||||+|+..|+.+++++|+++|+++
T Consensus         2 G~TpLh~A~~~~~~~~v~~Ll~~ga~~   28 (33)
T PF00023_consen    2 GNTPLHYAAQRGHPDIVKLLLKHGADI   28 (33)
T ss_dssp             SBBHHHHHHHTTCHHHHHHHHHTTSCT
T ss_pred             cccHHHHHHHHHHHHHHHHHHHCcCCC
Confidence            666677766666666677776666644

Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].; GO: 0005515 protein binding; PDB: 1D9S_A 1NFI_F 1IKN_D 1WDY_A 1OT8_C 1QYM_A 1TR4_A 1UOH_A 1N11_A 1K1A_A ....

>KOG0818 consensus GTPase-activating proteins of the GIT family [Signal transduction mechanisms]

Probab=98.75  E-value=2.8e-08  Score=80.81  Aligned_cols=77  Identities=31%  Similarity=0.302  Sum_probs=70.1

Q ss_pred             HHHHHHHCCcHHHHHHHHHcCCCCCcccCCCCCChHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCCCCCcccccccchH
Q 028370           75 PLHLAAQGGHLEVMDVLLERGADIDARTKGACGWTPLHTAAKERKKEAVRFLIENGAFLPDDINDSRFNPPLHYCPSLEW  154 (210)
Q Consensus        75 ~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~g~t~l~~a~~~~~  154 (210)
                      -||..++.|+.+..--|+..|+++|...... |.||||.|+..|+..-+++|+-+|+++  ...|.+|.||+.+|.+.++
T Consensus       136 QLhasvRt~nlet~LRll~lGA~~N~~hpek-g~TpLHvAAk~Gq~~Q~ElL~vYGAD~--~a~d~~GmtP~~~AR~~gH  212 (669)
T KOG0818|consen  136 QLHSSVRTGNLETCLRLLSLGAQANFFHPEK-GNTPLHVAAKAGQILQAELLAVYGADP--GAQDSSGMTPVDYARQGGH  212 (669)
T ss_pred             HHHHHhhcccHHHHHHHHHcccccCCCCccc-CCchhHHHHhccchhhhhHHhhccCCC--CCCCCCCCcHHHHHHhcCc
Confidence            4899999999998888889999999998776 999999999999999999999999966  8999999999999986553

>KOG0506 consensus Glutaminase (contains ankyrin repeat) [Amino acid transport and metabolism]

Probab=98.70  E-value=1.7e-08  Score=81.66  Aligned_cols=96  Identities=24%  Similarity=0.349  Sum_probs=83.3

Q ss_pred             CCCCCcHHHHHHHCCcHHHHHHHHHcCCCCCcccCCCCCChHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCCCCCcccc
Q 028370           69 KSKGVTPLHLAAQGGHLEVMDVLLERGADIDARTKGACGWTPLHTAAKERKKEAVRFLIENGAFLPDDINDSRFNPPLHY  148 (210)
Q Consensus        69 ~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~g~t~l~~  148 (210)
                      ..++...+++|++.|....++-+.-.|.|+...+.|  .+|+||.|+..|+.+++++|++... +++..+|.+|.|||+=
T Consensus       503 ~~~~~i~~~~aa~~GD~~alrRf~l~g~D~~~~DyD--~RTaLHvAAaEG~v~v~kfl~~~~k-v~~~~kDRw~rtPlDd  579 (622)
T KOG0506|consen  503 ENDTVINVMYAAKNGDLSALRRFALQGMDLETKDYD--DRTALHVAAAEGHVEVVKFLLNACK-VDPDPKDRWGRTPLDD  579 (622)
T ss_pred             cccchhhhhhhhhcCCHHHHHHHHHhcccccccccc--cchhheeecccCceeHHHHHHHHHc-CCCChhhccCCCcchH
Confidence            344567899999999999999888889999988888  8999999999999999999999865 5779999999999999


Q ss_pred             cccchHHHHHHHHHhhhhhhc
Q 028370          149 CPSLEWAYEEMMRFQRESFSA  169 (210)
Q Consensus       149 a~~~~~~~~~~~~~l~~~~~~  169 (210)
                      |...  +..+++++|.+....
T Consensus       580 A~~F--~h~~v~k~L~~~~~~  598 (622)
T KOG0506|consen  580 AKHF--KHKEVVKLLEEAQYP  598 (622)
T ss_pred             hHhc--CcHHHHHHHHHHhcc
Confidence            9844  458899998887653

>KOG0522 consensus Ankyrin repeat protein [General function prediction only]

Probab=98.65  E-value=9.9e-08  Score=78.26  Aligned_cols=87  Identities=31%  Similarity=0.555  Sum_probs=59.6

Q ss_pred             hHHHHHHHcCCHHHHHHHHHCC--CCccccccCCCCCCCcHHHHHHHCCcHHHHHHHHHcCCCCCcccCCCCCChHHHHH
Q 028370           37 TPLHIGARKGDIKLVKQLLDEG--MDVNVAAWGPKSKGVTPLHLAAQGGHLEVMDVLLERGADIDARTKGACGWTPLHTA  114 (210)
Q Consensus        37 t~L~~A~~~g~~~~v~~Ll~~g--~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~~g~tpL~~A  114 (210)
                      .|+|+++...+.+-....+...  ..++..    |..|.||||.|+..|+...++.|+..|+++..++..  |++|||-|
T Consensus        22 ~~lh~~~~~~~~~sl~~el~~~~~~~id~~----D~~g~TpLhlAV~Lg~~~~a~~Ll~a~Adv~~kN~~--gWs~L~EA   95 (560)
T KOG0522|consen   22 KPLHWAVVTTDSDSLEQELLAKVSLVIDRR----DPPGRTPLHLAVRLGHVEAARILLSAGADVSIKNNE--GWSPLHEA   95 (560)
T ss_pred             cccchhhhccchhhHHHHHhhhhhceeccc----cCCCCccHHHHHHhcCHHHHHHHHhcCCCccccccc--cccHHHHH
Confidence            3477777776665555544332  233334    667778888888888887777787777777777666  77888888


Q ss_pred             HhcCCHHHHHHHHHc
Q 028370          115 AKERKKEAVRFLIEN  129 (210)
Q Consensus       115 ~~~g~~~~v~~Ll~~  129 (210)
                      +..|+.+++..++.+
T Consensus        96 v~~g~~q~i~~vlr~  110 (560)
T KOG0522|consen   96 VSTGNEQIITEVLRH  110 (560)
T ss_pred             HHcCCHHHHHHHHHH
Confidence            877777777666654

>KOG0782 consensus Predicted diacylglycerol kinase [Signal transduction mechanisms]

Probab=98.60  E-value=9.5e-08  Score=79.11  Aligned_cols=100  Identities=25%  Similarity=0.326  Sum_probs=87.7

Q ss_pred             hhhcccCCCCChHHHHHHHcCCHHHHHHHHHCCCCccccccCCCCCCCcHHHHHHHCCcHHHHHHHHHcCCCCCcccCCC
Q 028370           26 RSVIDTDDRGWTPLHIGARKGDIKLVKQLLDEGMDVNVAAWGPKSKGVTPLHLAAQGGHLEVMDVLLERGADIDARTKGA  105 (210)
Q Consensus        26 ~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~  105 (210)
                      -++..++.+..|.||+|+..|+-++|++++++|+.-...  -.+..|.|+||.|+..++..+..+|++.|+++...+.. 
T Consensus       890 g~ll~~~~~~~sllh~a~~tg~~eivkyildh~p~elld--~~de~get~lhkaa~~~~r~vc~~lvdagasl~ktd~k-  966 (1004)
T KOG0782|consen  890 GSLLIQGPDHCSLLHYAAKTGNGEIVKYILDHGPSELLD--MADETGETALHKAACQRNRAVCQLLVDAGASLRKTDSK-  966 (1004)
T ss_pred             CceEeeCcchhhHHHHHHhcCChHHHHHHHhcCCHHHHH--HHhhhhhHHHHHHHHhcchHHHHHHHhcchhheecccC-
Confidence            456778999999999999999999999999999743211  11788999999999999999999999999999888777 


Q ss_pred             CCChHHHHHHhcCCHHHHHHHHHc
Q 028370          106 CGWTPLHTAAKERKKEAVRFLIEN  129 (210)
Q Consensus       106 ~g~tpL~~A~~~g~~~~v~~Ll~~  129 (210)
                       |.||-.-|-+.|+.+.+-+|-.+
T Consensus       967 -g~tp~eraqqa~d~dlaayle~r  989 (1004)
T KOG0782|consen  967 -GKTPQERAQQAGDPDLAAYLESR  989 (1004)
T ss_pred             -CCChHHHHHhcCCchHHHHHhhh
Confidence             99999999999999999998764

>KOG3609 consensus Receptor-activated Ca2+-permeable cation channels (STRPC family) [Inorganic ion transport and metabolism; Signal transduction mechanisms]

Probab=98.58  E-value=2e-07  Score=80.45  Aligned_cols=119  Identities=24%  Similarity=0.260  Sum_probs=96.9

Q ss_pred             hhhhhccchhHHHHHHhhHHHh--hhhcccCCCCChHHHHHHHcCCHHHHHHHHHCCCCccccccCCCCCCCcHHHHHHH
Q 028370            4 SMVHEQLGPFTLQRKASRKRFF--RSVIDTDDRGWTPLHIGARKGDIKLVKQLLDEGMDVNVAAWGPKSKGVTPLHLAAQ   81 (210)
Q Consensus         4 ~~~~~~~~~~~~~~~~~~~~~~--~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~g~t~L~~A~~   81 (210)
                      +++..+.|..+.+++.+.+.-.  -++|..|.-|+++|+.|+.+.+.++.++|+++....  .         .+|..|+.
T Consensus        29 fL~a~E~gd~~~V~k~l~~~~~~~lninc~d~lGr~al~iai~nenle~~eLLl~~~~~~--g---------dALL~aI~   97 (822)
T KOG3609|consen   29 FLLAHENGDVPLVAKALEYKAVSKLNINCRDPLGRLALHIAIDNENLELQELLLDTSSEE--G---------DALLLAIA   97 (822)
T ss_pred             HHHHHHcCChHHHHHHHHhccccccchhccChHhhhceecccccccHHHHHHHhcCcccc--c---------hHHHHHHH
Confidence            4566788999999998887766  567789999999999999999999999999886543  2         48899999


Q ss_pred             CCcHHHHHHHHHcCCCCCc--------ccCCCCCChHHHHHHhcCCHHHHHHHHHcCCCC
Q 028370           82 GGHLEVMDVLLERGADIDA--------RTKGACGWTPLHTAAKERKKEAVRFLIENGAFL  133 (210)
Q Consensus        82 ~~~~~~v~~Ll~~g~~~~~--------~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~g~~~  133 (210)
                      .|...+|+.++.+-.....        ......+-||+.+|+..++.||+++|+.+|+.+
T Consensus        98 ~~~v~~VE~ll~~~~~~~~~~~~~d~~~~~ft~ditPliLAAh~NnyEil~~Ll~kg~~i  157 (822)
T KOG3609|consen   98 VGSVPLVELLLVHFVDAPYLERSGDANSPHFTPDITPLMLAAHLNNFEILQCLLTRGHCI  157 (822)
T ss_pred             HHHHHHHHHHHhcccccchhccccccCcccCCCCccHHHHHHHhcchHHHHHHHHcCCCC
Confidence            9999999999986332210        011122679999999999999999999999976

>KOG0522 consensus Ankyrin repeat protein [General function prediction only]

Probab=98.51  E-value=3.6e-07  Score=75.05  Aligned_cols=67  Identities=30%  Similarity=0.529  Sum_probs=60.9

Q ss_pred             HhhhhcccCCCCChHHHHHHHcCCHHHHHHHHHCCCCccccccCCCCCCCcHHHHHHHCCcHHHHHHHHHc
Q 028370           24 FFRSVIDTDDRGWTPLHIGARKGDIKLVKQLLDEGMDVNVAAWGPKSKGVTPLHLAAQGGHLEVMDVLLER   94 (210)
Q Consensus        24 ~~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~   94 (210)
                      ....+...|..|.||||.|+..|+.+.++.|+..|+++...    |..|++|||.|+..|+.+++..++.+
T Consensus        44 ~~~~id~~D~~g~TpLhlAV~Lg~~~~a~~Ll~a~Adv~~k----N~~gWs~L~EAv~~g~~q~i~~vlr~  110 (560)
T KOG0522|consen   44 VSLVIDRRDPPGRTPLHLAVRLGHVEAARILLSAGADVSIK----NNEGWSPLHEAVSTGNEQIITEVLRH  110 (560)
T ss_pred             hhceeccccCCCCccHHHHHHhcCHHHHHHHHhcCCCcccc----ccccccHHHHHHHcCCHHHHHHHHHH
Confidence            45567889999999999999999999999999999999988    99999999999999999888777654

>KOG0511 consensus Ankyrin repeat protein [General function prediction only]

Probab=98.47  E-value=5.7e-07  Score=71.21  Aligned_cols=75  Identities=33%  Similarity=0.453  Sum_probs=62.6

Q ss_pred             ChHHHHHHHcCCHHHHHHHHHCCCCccccccCCCCCCCcHHHHHHHCCcHHHHHHHHHcCCCCCcccCCCCCChHHHHHH
Q 028370           36 WTPLHIGARKGDIKLVKQLLDEGMDVNVAAWGPKSKGVTPLHLAAQGGHLEVMDVLLERGADIDARTKGACGWTPLHTAA  115 (210)
Q Consensus        36 ~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~~g~tpL~~A~  115 (210)
                      .--|+.||+.|+.+.++.|++.|.++|..    |....+||.+|+..||..+|++|+++|+-.+..+.+  |.. .|+++
T Consensus        37 f~elceacR~GD~d~v~~LVetgvnVN~v----D~fD~spL~lAsLcGHe~vvklLLenGAiC~rdtf~--G~R-C~Yga  109 (516)
T KOG0511|consen   37 FGELCEACRAGDVDRVRYLVETGVNVNAV----DRFDSSPLYLASLCGHEDVVKLLLENGAICSRDTFD--GDR-CHYGA  109 (516)
T ss_pred             hHHHHHHhhcccHHHHHHHHHhCCCcchh----hcccccHHHHHHHcCcHHHHHHHHHcCCcccccccC--cch-hhhhh
Confidence            45689999999999999999999999998    899999999999999999999999999866544433  543 34444


Q ss_pred             hc
Q 028370          116 KE  117 (210)
Q Consensus       116 ~~  117 (210)
                      -+
T Consensus       110 Ln  111 (516)
T KOG0511|consen  110 LN  111 (516)
T ss_pred             hh
Confidence            43

>KOG2384 consensus Major histocompatibility complex protein BAT4, contains G-patch and ankyrin domains [General function prediction only]

Probab=98.47  E-value=1e-06  Score=63.47  Aligned_cols=83  Identities=23%  Similarity=0.321  Sum_probs=69.2

Q ss_pred             hhcccCCCCChHHHHHHHcCCHHHHHHHHHCC-CCccccccCCCCCCCcHHHHHHHCCcHHHHHHHHHcCCCCCcccCCC
Q 028370           27 SVIDTDDRGWTPLHIGARKGDIKLVKQLLDEG-MDVNVAAWGPKSKGVTPLHLAAQGGHLEVMDVLLERGADIDARTKGA  105 (210)
Q Consensus        27 ~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g-~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~  105 (210)
                      +++.+|..|+|+++.|+..|+.+.+.+|+.+| +.+.+.    |..+.+++.+|-+.|...++..|.++..+-.-.+...
T Consensus         4 ~in~rD~fgWTalmcaa~eg~~eavsyllgrg~a~vgv~----d~ssldaaqlaek~g~~~fvh~lfe~~~ets~p~nss   79 (223)
T KOG2384|consen    4 NINARDAFGWTALMCAAMEGSNEAVSYLLGRGVAFVGVT----DESSLDAAQLAEKGGAQAFVHSLFENDRETSHPMNSS   79 (223)
T ss_pred             CccchhhhcchHHHHHhhhcchhHHHHHhccCccccccc----ccccchHHHHHHhcChHHHHHHHHHHhccCCCcccCC
Confidence            57889999999999999999999999999999 888888    8999999999999999999999998755444333333


Q ss_pred             CCChHHHH
Q 028370          106 CGWTPLHT  113 (210)
Q Consensus       106 ~g~tpL~~  113 (210)
                      .++++..+
T Consensus        80 ~~e~lfyC   87 (223)
T KOG2384|consen   80 RDEALFYC   87 (223)
T ss_pred             CCCccchh
Confidence            35555554

>KOG0521 consensus Putative GTPase activating proteins (GAPs) [Signal transduction mechanisms]

Probab=98.43  E-value=3.2e-07  Score=80.64  Aligned_cols=80  Identities=29%  Similarity=0.425  Sum_probs=59.8

Q ss_pred             CCCCcHHHHHHHCCcHHHHHHHHHcCCCCCcccCCCCCChHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCCCCCccccc
Q 028370           70 SKGVTPLHLAAQGGHLEVMDVLLERGADIDARTKGACGWTPLHTAAKERKKEAVRFLIENGAFLPDDINDSRFNPPLHYC  149 (210)
Q Consensus        70 ~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~g~t~l~~a  149 (210)
                      ..|.|+||.|+..+...++++|+++|++++..+..  |.||+|.+...|+...+..|+++|+  .....+.+|.+|+++|
T Consensus       654 ~~~~s~lh~a~~~~~~~~~e~ll~~ga~vn~~d~~--g~~plh~~~~~g~~~~~~~ll~~~a--~~~a~~~~~~~~l~~a  729 (785)
T KOG0521|consen  654 CIGCSLLHVAVGTGDSGAVELLLQNGADVNALDSK--GRTPLHHATASGHTSIACLLLKRGA--DPNAFDPDGKLPLDIA  729 (785)
T ss_pred             hcccchhhhhhccchHHHHHHHHhcCCcchhhhcc--CCCcchhhhhhcccchhhhhccccc--cccccCccCcchhhHH
Confidence            34667778887777777777788887777777766  7788888877777777777777777  3477777777787777


Q ss_pred             ccch
Q 028370          150 PSLE  153 (210)
Q Consensus       150 ~~~~  153 (210)
                      ....
T Consensus       730 ~~~~  733 (785)
T KOG0521|consen  730 MEAA  733 (785)
T ss_pred             hhhc
Confidence            6543

>KOG0511 consensus Ankyrin repeat protein [General function prediction only]

Probab=98.39  E-value=3.8e-06  Score=66.68  Aligned_cols=73  Identities=25%  Similarity=0.347  Sum_probs=61.3

Q ss_pred             CcHHHHHHHCCcHHHHHHHHHcCCCCCcccCCCCCChHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCCCCCcccccc
Q 028370           73 VTPLHLAAQGGHLEVMDVLLERGADIDARTKGACGWTPLHTAAKERKKEAVRFLIENGAFLPDDINDSRFNPPLHYCP  150 (210)
Q Consensus        73 ~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~g~t~l~~a~  150 (210)
                      .--|..||+.|..+.|+.|++.|.++|..++.  ..+||.+|+-.||.++|++|+++|+--  ......|... ||++
T Consensus        37 f~elceacR~GD~d~v~~LVetgvnVN~vD~f--D~spL~lAsLcGHe~vvklLLenGAiC--~rdtf~G~RC-~Yga  109 (516)
T KOG0511|consen   37 FGELCEACRAGDVDRVRYLVETGVNVNAVDRF--DSSPLYLASLCGHEDVVKLLLENGAIC--SRDTFDGDRC-HYGA  109 (516)
T ss_pred             hHHHHHHhhcccHHHHHHHHHhCCCcchhhcc--cccHHHHHHHcCcHHHHHHHHHcCCcc--cccccCcchh-hhhh
Confidence            34688999999999999999999999999887  889999999999999999999999943  4444556544 4444

>KOG0705 consensus GTPase-activating protein Centaurin gamma (contains Ras-like GTPase, PH and ankyrin repeat domains) [Signal transduction mechanisms]

Probab=98.35  E-value=1.4e-06  Score=72.35  Aligned_cols=67  Identities=37%  Similarity=0.536  Sum_probs=61.9

Q ss_pred             ccCCCCChHHHHHHHcCCHHHHHHHHHCCCCccccccCCCCCCCcHHHHHHHCCcHHHHHHHHHcCCCCCc
Q 028370           30 DTDDRGWTPLHIGARKGDIKLVKQLLDEGMDVNVAAWGPKSKGVTPLHLAAQGGHLEVMDVLLERGADIDA  100 (210)
Q Consensus        30 ~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~  100 (210)
                      ..+.+|+|+||+||+.|++.+.++|+=+|+|+..+    |..|+|+|.||-..|.-+|+..|+++|+..+.
T Consensus       656 ~~~~~grt~LHLa~~~gnVvl~QLLiWyg~dv~~r----da~g~t~l~yar~a~sqec~d~llq~gcp~e~  722 (749)
T KOG0705|consen  656 CGEGDGRTALHLAARKGNVVLAQLLIWYGVDVMAR----DAHGRTALFYARQAGSQECIDVLLQYGCPDEC  722 (749)
T ss_pred             ccCCCCcchhhhhhhhcchhHHHHHHHhCccceec----ccCCchhhhhHhhcccHHHHHHHHHcCCCccc
Confidence            35668899999999999999999999999999988    99999999999999999999999999987653

>KOG0521 consensus Putative GTPase activating proteins (GAPs) [Signal transduction mechanisms]

Probab=98.20  E-value=1.2e-06  Score=77.10  Aligned_cols=99  Identities=35%  Similarity=0.433  Sum_probs=85.3

Q ss_pred             HHhhhhcccCCCCChHHHHHHHcCCHHHHHHHHHCCCCccccccCCCCCCCcHHHHHHHCCcHHHHHHHHHcCCCCCccc
Q 028370           23 RFFRSVIDTDDRGWTPLHIGARKGDIKLVKQLLDEGMDVNVAAWGPKSKGVTPLHLAAQGGHLEVMDVLLERGADIDART  102 (210)
Q Consensus        23 ~~~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~  102 (210)
                      +...++..+-..|.|+||.|+..|...++++|+++|++++..    +..|.+|+|.+...|+...+..++.+|++.+..+
T Consensus       644 ~~~~n~~~~~~~~~s~lh~a~~~~~~~~~e~ll~~ga~vn~~----d~~g~~plh~~~~~g~~~~~~~ll~~~a~~~a~~  719 (785)
T KOG0521|consen  644 GCCENWPVVLCIGCSLLHVAVGTGDSGAVELLLQNGADVNAL----DSKGRTPLHHATASGHTSIACLLLKRGADPNAFD  719 (785)
T ss_pred             hhhhccchhhhcccchhhhhhccchHHHHHHHHhcCCcchhh----hccCCCcchhhhhhcccchhhhhccccccccccC
Confidence            333344445556899999999999999999999999999998    9999999999999999999999999999999999


Q ss_pred             CCCCCChHHHHHHhcCCHHHHHHHH
Q 028370          103 KGACGWTPLHTAAKERKKEAVRFLI  127 (210)
Q Consensus       103 ~~~~g~tpL~~A~~~g~~~~v~~Ll  127 (210)
                      .+  |.+|+++|....+.+++-++.
T Consensus       720 ~~--~~~~l~~a~~~~~~d~~~l~~  742 (785)
T KOG0521|consen  720 PD--GKLPLDIAMEAANADIVLLLR  742 (785)
T ss_pred             cc--CcchhhHHhhhccccHHHHHh
Confidence            88  999999998776655554443

>KOG2384 consensus Major histocompatibility complex protein BAT4, contains G-patch and ankyrin domains [General function prediction only]

Probab=98.20  E-value=9.2e-06  Score=58.66  Aligned_cols=69  Identities=28%  Similarity=0.259  Sum_probs=61.5

Q ss_pred             CCCccccccCCCCCCCcHHHHHHHCCcHHHHHHHHHcC-CCCCcccCCCCCChHHHHHHhcCCHHHHHHHHHcCCC
Q 028370           58 GMDVNVAAWGPKSKGVTPLHLAAQGGHLEVMDVLLERG-ADIDARTKGACGWTPLHTAAKERKKEAVRFLIENGAF  132 (210)
Q Consensus        58 g~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g-~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~g~~  132 (210)
                      +.++|.+    |..|+|+++.|+..|+.+.+.+|+..| +.+...+..  |.+++.+|-..|..++++.|-+.-.+
T Consensus         2 e~~in~r----D~fgWTalmcaa~eg~~eavsyllgrg~a~vgv~d~s--sldaaqlaek~g~~~fvh~lfe~~~e   71 (223)
T KOG2384|consen    2 EGNINAR----DAFGWTALMCAAMEGSNEAVSYLLGRGVAFVGVTDES--SLDAAQLAEKGGAQAFVHSLFENDRE   71 (223)
T ss_pred             CCCccch----hhhcchHHHHHhhhcchhHHHHHhccCcccccccccc--cchHHHHHHhcChHHHHHHHHHHhcc
Confidence            3567777    999999999999999999999999999 788877776  99999999999999999999987553

>KOG0520 consensus Uncharacterized conserved protein, contains IPT/TIG domain [Function unknown]

Probab=98.11  E-value=4.3e-06  Score=73.90  Aligned_cols=130  Identities=22%  Similarity=0.209  Sum_probs=94.2

Q ss_pred             hcccCCCCChHHHHHHHcCCHHHHHHHHHC-CCCccccccCCCCCCCcHHHHHHHCCcHHHHHHHH-HcCCCCCcccCCC
Q 028370           28 VIDTDDRGWTPLHIGARKGDIKLVKQLLDE-GMDVNVAAWGPKSKGVTPLHLAAQGGHLEVMDVLL-ERGADIDARTKGA  105 (210)
Q Consensus        28 ~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~-g~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll-~~g~~~~~~~~~~  105 (210)
                      .....-.|++.+|+++..+..-.++.+++- |......    +.+|...+|. |..++.+.+-+++ -.|..++..+.. 
T Consensus       567 ~~~~~~r~~lllhL~a~~lyawLie~~~e~~~~~~~el----d~d~qgV~hf-ca~lg~ewA~ll~~~~~~ai~i~D~~-  640 (975)
T KOG0520|consen  567 SSSVNFRDMLLLHLLAELLYAWLIEKVIEWAGSGDLEL----DRDGQGVIHF-CAALGYEWAFLPISADGVAIDIRDRN-  640 (975)
T ss_pred             cccCCCcchHHHHHHHHHhHHHHHHHHhcccccCchhh----cccCCChhhH-hhhcCCceeEEEEeecccccccccCC-
Confidence            334556799999999999999888888875 5444444    6777788888 5555555554444 367888888888 


Q ss_pred             CCChHHHHHHhcCCHHHHHHHHHcCCC----CCCCCCCCCCCCcccccccchHHHHHHHHHhhhh
Q 028370          106 CGWTPLHTAAKERKKEAVRFLIENGAF----LPDDINDSRFNPPLHYCPSLEWAYEEMMRFQRES  166 (210)
Q Consensus       106 ~g~tpL~~A~~~g~~~~v~~Ll~~g~~----~~~~~~~~~g~t~l~~a~~~~~~~~~~~~~l~~~  166 (210)
                       |+||||+|+..|+..++..|++.|++    .++....-.|.|+-..|..  ++...+..+|.+.
T Consensus       641 -G~tpL~wAa~~G~e~l~a~l~~lga~~~~~tdps~~~p~g~ta~~la~s--~g~~gia~~lse~  702 (975)
T KOG0520|consen  641 -GWTPLHWAAFRGREKLVASLIELGADPGAVTDPSPETPGGKTAADLARA--NGHKGIAGYLSEK  702 (975)
T ss_pred             -CCcccchHhhcCHHHHHHHHHHhccccccccCCCCCCCCCCchhhhhhc--ccccchHHHHhhh
Confidence             99999999999999999999988763    2233444556777777763  3446666666654

>KOG3609 consensus Receptor-activated Ca2+-permeable cation channels (STRPC family) [Inorganic ion transport and metabolism; Signal transduction mechanisms]

Probab=97.45  E-value=0.00045  Score=60.34  Aligned_cols=123  Identities=20%  Similarity=0.234  Sum_probs=94.2

Q ss_pred             CCCCChHHHHHHHcCCHHHHHHHHHCCC----CccccccCCCCCCCcHHHHHHHCCcHHHHHHHHHcCCCCCcccCCCCC
Q 028370           32 DDRGWTPLHIGARKGDIKLVKQLLDEGM----DVNVAAWGPKSKGVTPLHLAAQGGHLEVMDVLLERGADIDARTKGACG  107 (210)
Q Consensus        32 d~~g~t~L~~A~~~g~~~~v~~Ll~~g~----~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~~g  107 (210)
                      ...+--....|+.+|+...|+..++...    ++|+.    |.-|+++++.|+...+.++.++|++.+...        |
T Consensus        22 l~~~e~~fL~a~E~gd~~~V~k~l~~~~~~~lninc~----d~lGr~al~iai~nenle~~eLLl~~~~~~--------g   89 (822)
T KOG3609|consen   22 LNEGEKGFLLAHENGDVPLVAKALEYKAVSKLNINCR----DPLGRLALHIAIDNENLELQELLLDTSSEE--------G   89 (822)
T ss_pred             cchhhHHHHHHHHcCChHHHHHHHHhccccccchhcc----ChHhhhceecccccccHHHHHHHhcCcccc--------c
Confidence            3345556778999999999999997643    45555    889999999999999999999999986543        2


Q ss_pred             ChHHHHHHhcCCHHHHHHHHHcCCCCC--------CCCCCCCCCCcccccccchHHHHHHHHHhhhhhhc
Q 028370          108 WTPLHTAAKERKKEAVRFLIENGAFLP--------DDINDSRFNPPLHYCPSLEWAYEEMMRFQRESFSA  169 (210)
Q Consensus       108 ~tpL~~A~~~g~~~~v~~Ll~~g~~~~--------~~~~~~~g~t~l~~a~~~~~~~~~~~~~l~~~~~~  169 (210)
                       .+|-+|+..|..++|++++.+.....        ....-.-+-||+-.|+  ..+..||++.|......
T Consensus        90 -dALL~aI~~~~v~~VE~ll~~~~~~~~~~~~~d~~~~~ft~ditPliLAA--h~NnyEil~~Ll~kg~~  156 (822)
T KOG3609|consen   90 -DALLLAIAVGSVPLVELLLVHFVDAPYLERSGDANSPHFTPDITPLMLAA--HLNNFEILQCLLTRGHC  156 (822)
T ss_pred             -hHHHHHHHHHHHHHHHHHHhcccccchhccccccCcccCCCCccHHHHHH--HhcchHHHHHHHHcCCC
Confidence             48999999999999999999865321        0122233469999998  55568999998876443

>KOG0520 consensus Uncharacterized conserved protein, contains IPT/TIG domain [Function unknown]

Probab=97.39  E-value=0.00018  Score=63.97  Aligned_cols=96  Identities=25%  Similarity=0.332  Sum_probs=72.8

Q ss_pred             cccCCCCChHHHHHHHcCCHHHHHHHH-HCCCCccccccCCCCCCCcHHHHHHHCCcHHHHHHHHHcCCCCCcc----cC
Q 028370           29 IDTDDRGWTPLHIGARKGDIKLVKQLL-DEGMDVNVAAWGPKSKGVTPLHLAAQGGHLEVMDVLLERGADIDAR----TK  103 (210)
Q Consensus        29 ~~~d~~g~t~L~~A~~~g~~~~v~~Ll-~~g~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~----~~  103 (210)
                      ...|.+|.-.+|.+ ..+.++.+.+++ -.|..++.+    |..|+||||||+..|+..++..|++.|++....    ..
T Consensus       602 ~eld~d~qgV~hfc-a~lg~ewA~ll~~~~~~ai~i~----D~~G~tpL~wAa~~G~e~l~a~l~~lga~~~~~tdps~~  676 (975)
T KOG0520|consen  602 LELDRDGQGVIHFC-AALGYEWAFLPISADGVAIDIR----DRNGWTPLHWAAFRGREKLVASLIELGADPGAVTDPSPE  676 (975)
T ss_pred             hhhcccCCChhhHh-hhcCCceeEEEEeecccccccc----cCCCCcccchHhhcCHHHHHHHHHHhccccccccCCCCC
Confidence            45777888888884 445555555554 466777777    999999999999999999999999876644322    11


Q ss_pred             CCCCChHHHHHHhcCCHHHHHHHHHc
Q 028370          104 GACGWTPLHTAAKERKKEAVRFLIEN  129 (210)
Q Consensus       104 ~~~g~tpL~~A~~~g~~~~v~~Ll~~  129 (210)
                      ...|.|+-..|...|+..+..+|-+.
T Consensus       677 ~p~g~ta~~la~s~g~~gia~~lse~  702 (975)
T KOG0520|consen  677 TPGGKTAADLARANGHKGIAGYLSEK  702 (975)
T ss_pred             CCCCCchhhhhhcccccchHHHHhhh
Confidence            22388999999999998888887765

>smart00248 ANK ankyrin repeats

Probab=97.35  E-value=0.00045  Score=33.37  Aligned_cols=27  Identities=52%  Similarity=0.977  Sum_probs=16.1

Q ss_pred             CChHHHHHHHcCCHHHHHHHHHCCCCc
Q 028370           35 GWTPLHIGARKGDIKLVKQLLDEGMDV   61 (210)
Q Consensus        35 g~t~L~~A~~~g~~~~v~~Ll~~g~~~   61 (210)
                      |.||+|+|+..++.++++.|++.+.++
T Consensus         2 ~~~~l~~~~~~~~~~~~~~ll~~~~~~   28 (30)
T smart00248        2 GRTPLHLAAENGNLEVVKLLLDKGADI   28 (30)
T ss_pred             CCCHHHHHHHcCCHHHHHHHHHcCCCC
Confidence            456666666666666666666655543

Ankyrin repeats are about 33 amino acids long and occur in at least four consecutive copies. They are involved in protein-protein interactions. The core of the repeat seems to be an helix-loop-helix structure.

>KOG2505 consensus Ankyrin repeat protein [General function prediction only]

Probab=97.34  E-value=0.001  Score=54.92  Aligned_cols=64  Identities=19%  Similarity=0.229  Sum_probs=38.7

Q ss_pred             HHHHHHHHHcCCCCCccc----CCCCCChHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCCCCCcccccc
Q 028370           85 LEVMDVLLERGADIDART----KGACGWTPLHTAAKERKKEAVRFLIENGAFLPDDINDSRFNPPLHYCP  150 (210)
Q Consensus        85 ~~~v~~Ll~~g~~~~~~~----~~~~g~tpL~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~g~t~l~~a~  150 (210)
                      ...+++|.+++.+.|..-    .+..-.|+||+|+.+|..++|.+|++.|+  ++..+|..|.||..++.
T Consensus       404 p~~ie~lken~lsgnf~~~pe~~~~ltsT~LH~aa~qg~~k~v~~~Leeg~--Dp~~kd~~Grtpy~ls~  471 (591)
T KOG2505|consen  404 PDSIEALKENLLSGNFDVTPEANDYLTSTFLHYAAAQGARKCVKYFLEEGC--DPSTKDGAGRTPYSLSA  471 (591)
T ss_pred             hhHHHHHHhcCCcccccccccccccccchHHHHHHhcchHHHHHHHHHhcC--CchhcccCCCCcccccc
Confidence            345566666655543221    11123467777777777777777777776  44777777777777665

>smart00248 ANK ankyrin repeats

Probab=97.14  E-value=0.0011  Score=31.82  Aligned_cols=26  Identities=46%  Similarity=0.705  Sum_probs=17.6

Q ss_pred             CChHHHHHHhcCCHHHHHHHHHcCCC
Q 028370          107 GWTPLHTAAKERKKEAVRFLIENGAF  132 (210)
Q Consensus       107 g~tpL~~A~~~g~~~~v~~Ll~~g~~  132 (210)
                      |.||+|+|+..++.++++.|++.+.+
T Consensus         2 ~~~~l~~~~~~~~~~~~~~ll~~~~~   27 (30)
T smart00248        2 GRTPLHLAAENGNLEVVKLLLDKGAD   27 (30)
T ss_pred             CCCHHHHHHHcCCHHHHHHHHHcCCC
Confidence            55677777777777777777766653

Ankyrin repeats are about 33 amino acids long and occur in at least four consecutive copies. They are involved in protein-protein interactions. The core of the repeat seems to be an helix-loop-helix structure.

>KOG2505 consensus Ankyrin repeat protein [General function prediction only]

Probab=96.95  E-value=0.0014  Score=54.10  Aligned_cols=67  Identities=24%  Similarity=0.267  Sum_probs=54.0

Q ss_pred             CHHHHHHHHHCCCCccccccC--CCCCCCcHHHHHHHCCcHHHHHHHHHcCCCCCcccCCCCCChHHHHHH
Q 028370           47 DIKLVKQLLDEGMDVNVAAWG--PKSKGVTPLHLAAQGGHLEVMDVLLERGADIDARTKGACGWTPLHTAA  115 (210)
Q Consensus        47 ~~~~v~~Ll~~g~~~~~~~~~--~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~~g~tpL~~A~  115 (210)
                      -...++.|.+++.+.|...-.  .+....|+||+|+.+|...+|.+|++.|||+.+.+..  |.||..++.
T Consensus       403 ~p~~ie~lken~lsgnf~~~pe~~~~ltsT~LH~aa~qg~~k~v~~~Leeg~Dp~~kd~~--Grtpy~ls~  471 (591)
T KOG2505|consen  403 EPDSIEALKENLLSGNFDVTPEANDYLTSTFLHYAAAQGARKCVKYFLEEGCDPSTKDGA--GRTPYSLSA  471 (591)
T ss_pred             chhHHHHHHhcCCcccccccccccccccchHHHHHHhcchHHHHHHHHHhcCCchhcccC--CCCcccccc
Confidence            367788888888776543211  1333569999999999999999999999999999888  999999877

>PF06128 Shigella_OspC: Shigella flexneri OspC protein; InterPro: IPR010366 This family consists of the Shigella flexneri specific protein OspC

Probab=94.68  E-value=0.26  Score=37.24  Aligned_cols=92  Identities=22%  Similarity=0.330  Sum_probs=63.0

Q ss_pred             ChHHHHHHHcCCHHHHHHHHHCC----CCccccccCCCCCCCcHHHHHHH--CCcHHHHHHHHHcC-CCCCccc-CCCCC
Q 028370           36 WTPLHIGARKGDIKLVKQLLDEG----MDVNVAAWGPKSKGVTPLHLAAQ--GGHLEVMDVLLERG-ADIDART-KGACG  107 (210)
Q Consensus        36 ~t~L~~A~~~g~~~~v~~Ll~~g----~~~~~~~~~~~~~g~t~L~~A~~--~~~~~~v~~Ll~~g-~~~~~~~-~~~~g  107 (210)
                      .+++.+|+.++..+++.+|+++-    .++...     ..+.--+-++..  ..+..++++++.+| ++++..- .-..|
T Consensus       180 ~~Am~~si~~~K~dva~~lls~f~ft~~dv~~~-----~~~~ydieY~LS~h~a~~kvL~~Fi~~Glv~vN~~F~~~NSG  254 (284)
T PF06128_consen  180 HQAMWLSIGNAKEDVALYLLSKFNFTKQDVASM-----EKELYDIEYLLSEHSASYKVLEYFINRGLVDVNKKFQKVNSG  254 (284)
T ss_pred             HHHHHHHhcccHHHHHHHHHhhcceecchhhhc-----CcchhhHHHHHhhcCCcHHHHHHHHhccccccchhhhccCCc
Confidence            46788888888889999998763    122111     112223444433  45677889999886 3454321 11239


Q ss_pred             ChHHHHHHhcCCHHHHHHHHHcCCC
Q 028370          108 WTPLHTAAKERKKEAVRFLIENGAF  132 (210)
Q Consensus       108 ~tpL~~A~~~g~~~~v~~Ll~~g~~  132 (210)
                      .|-|.-|..+++.+++.+|+++|+.
T Consensus       255 dtMLDNA~Ky~~~emi~~Llk~GA~  279 (284)
T PF06128_consen  255 DTMLDNAMKYKNSEMIAFLLKYGAI  279 (284)
T ss_pred             chHHHhHHhcCcHHHHHHHHHcCcc
Confidence            9999999999999999999999993

The function of this family is unknown but it is thought that Osp proteins may be involved in postinvasion events related to virulence. Since bacterial pathogens adapt to multiple environments during the course of infecting a host, it has been proposed that Shigella evolved a mechanism to take advantage of a unique intracellular cue, which is mediated through MxiE, to express proteins when the organism reaches the eukaryotic cytosol [].

>PF11929 DUF3447: Domain of unknown function (DUF3447); InterPro: IPR020683 This entry represents the ankyrin repeat-containing domain

Probab=92.60  E-value=0.32  Score=30.13  Aligned_cols=47  Identities=19%  Similarity=0.282  Sum_probs=35.7

Q ss_pred             hHHHHHHHcCCHHHHHHHHHCCCCccccccCCCCCCCcHHHHHHHCCcHHHHHHHHHc
Q 028370           37 TPLHIGARKGDIKLVKQLLDEGMDVNVAAWGPKSKGVTPLHLAAQGGHLEVMDVLLER   94 (210)
Q Consensus        37 t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~   94 (210)
                      ..+..|+..|+.|+++.+++.+ .++          ...+..|+...+.+++++|++.
T Consensus         8 ~tl~~Ai~GGN~eII~~c~~~~-~~~----------~~~l~~AI~~H~n~i~~~l~~~   54 (76)
T PF11929_consen    8 KTLEYAIIGGNFEIINICLKKN-KPD----------NDCLEYAIKSHNNEIADWLIEN   54 (76)
T ss_pred             HHHHHHHhCCCHHHHHHHHHHh-ccH----------HHHHHHHHHHhhHHHHHHHHHh
Confidence            4567888888888888888665 222          1368888888888888888875

These domains contain multiple repeats of a beta(2)-alpha(2) motif. The ankyrin repeat is one of the most common protein-protein interaction motifs in nature. Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].

>PF06128 Shigella_OspC: Shigella flexneri OspC protein; InterPro: IPR010366 This family consists of the Shigella flexneri specific protein OspC

Probab=91.36  E-value=0.53  Score=35.61  Aligned_cols=52  Identities=27%  Similarity=0.299  Sum_probs=42.8

Q ss_pred             CCHHHHHHHHHCC-CCccccccCCCCCCCcHHHHHHHCCcHHHHHHHHHcCCCC
Q 028370           46 GDIKLVKQLLDEG-MDVNVAAWGPKSKGVTPLHLAAQGGHLEVMDVLLERGADI   98 (210)
Q Consensus        46 g~~~~v~~Ll~~g-~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~   98 (210)
                      .+..+++..+++| +++|.... .-..|.|-|..|+..++.+++.+|+.+|+-.
T Consensus       228 a~~kvL~~Fi~~Glv~vN~~F~-~~NSGdtMLDNA~Ky~~~emi~~Llk~GA~~  280 (284)
T PF06128_consen  228 ASYKVLEYFINRGLVDVNKKFQ-KVNSGDTMLDNAMKYKNSEMIAFLLKYGAIS  280 (284)
T ss_pred             CcHHHHHHHHhccccccchhhh-ccCCcchHHHhHHhcCcHHHHHHHHHcCccc
Confidence            4678889999998 67775432 2567999999999999999999999999843

The function of this family is unknown but it is thought that Osp proteins may be involved in postinvasion events related to virulence. Since bacterial pathogens adapt to multiple environments during the course of infecting a host, it has been proposed that Shigella evolved a mechanism to take advantage of a unique intracellular cue, which is mediated through MxiE, to express proteins when the organism reaches the eukaryotic cytosol [].

>PF11929 DUF3447: Domain of unknown function (DUF3447); InterPro: IPR020683 This entry represents the ankyrin repeat-containing domain

Probab=91.19  E-value=0.61  Score=28.88  Aligned_cols=47  Identities=30%  Similarity=0.459  Sum_probs=38.9

Q ss_pred             cHHHHHHHCCcHHHHHHHHHcCCCCCcccCCCCCChHHHHHHhcCCHHHHHHHHHc
Q 028370           74 TPLHLAAQGGHLEVMDVLLERGADIDARTKGACGWTPLHTAAKERKKEAVRFLIEN  129 (210)
Q Consensus        74 t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~  129 (210)
                      ..+..|+..|+.++++.+++.+ .+        ....+..|+...+-+++++|++.
T Consensus         8 ~tl~~Ai~GGN~eII~~c~~~~-~~--------~~~~l~~AI~~H~n~i~~~l~~~   54 (76)
T PF11929_consen    8 KTLEYAIIGGNFEIINICLKKN-KP--------DNDCLEYAIKSHNNEIADWLIEN   54 (76)
T ss_pred             HHHHHHHhCCCHHHHHHHHHHh-cc--------HHHHHHHHHHHhhHHHHHHHHHh
Confidence            5788999999999999998764 22        13579999999999999999886

These domains contain multiple repeats of a beta(2)-alpha(2) motif. The ankyrin repeat is one of the most common protein-protein interaction motifs in nature. Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].

>PF03158 DUF249: Multigene family 530 protein; InterPro: IPR004858 This entry represents multigene family 530 proteins from African swine fever virus (ASFV) viruses

Probab=89.86  E-value=1.8  Score=31.65  Aligned_cols=111  Identities=12%  Similarity=0.038  Sum_probs=55.2

Q ss_pred             CCChHHHHHHHcCCHHHHHHHHHCCCCccccccCCCCCCCcHHHHHHHCCcHHHH----HHHHHcCCCCCcccCCCCCCh
Q 028370           34 RGWTPLHIGARKGDIKLVKQLLDEGMDVNVAAWGPKSKGVTPLHLAAQGGHLEVM----DVLLERGADIDARTKGACGWT  109 (210)
Q Consensus        34 ~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v----~~Ll~~g~~~~~~~~~~~g~t  109 (210)
                      .+++.+-.||+..+.++|+|+-+.=.-         .+-.+.+..|....+.++.    .+++.+..+-...+...--..
T Consensus        75 ~~q~LFElAC~~qkydiV~WI~qnL~i---------~~~~~iFdIA~~~kDlsLyslGY~l~~~~~~~~~~~d~~~ll~~  145 (192)
T PF03158_consen   75 LNQELFELACEEQKYDIVKWIGQNLHI---------YNPEDIFDIAFAKKDLSLYSLGYKLLFNRMMSEHNEDPTSLLTQ  145 (192)
T ss_pred             HHHHHHHHHHHHccccHHHHHhhccCC---------CCchhhhhhhhhccchhHHHHHHHHHHhhcccccccCHHHHHHH
Confidence            445566667777777777776332111         1222455666666555432    122222211111111100112


Q ss_pred             HHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCCCCCcccccccchHHHHHHHHHh
Q 028370          110 PLHTAAKERKKEAVRFLIENGAFLPDDINDSRFNPPLHYCPSLEWAYEEMMRFQ  163 (210)
Q Consensus       110 pL~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~~~l  163 (210)
                      -|..|+..|.+..+--.+++|.++  +      .++|..|+.  .+...|+.++
T Consensus       146 hl~~a~~kgll~F~letlkygg~~--~------~~vls~Av~--ynhRkIL~yf  189 (192)
T PF03158_consen  146 HLEKAAAKGLLPFVLETLKYGGNV--D------IIVLSQAVK--YNHRKILDYF  189 (192)
T ss_pred             HHHHHHHCCCHHHHHHHHHcCCcc--c------HHHHHHHHH--hhHHHHHHHh
Confidence            356677788887777777777754  2      256666763  3345555443

These proteins may be involved in promoting survival of infected macrophages [].

>PF03158 DUF249: Multigene family 530 protein; InterPro: IPR004858 This entry represents multigene family 530 proteins from African swine fever virus (ASFV) viruses

Probab=80.15  E-value=4.7  Score=29.57  Aligned_cols=46  Identities=26%  Similarity=0.340  Sum_probs=35.3

Q ss_pred             HHHHHHHCCcHHHHHHHHHcCCCCCcccCCCCCChHHHHHHhcCCHHHHHHHHH
Q 028370           75 PLHLAAQGGHLEVMDVLLERGADIDARTKGACGWTPLHTAAKERKKEAVRFLIE  128 (210)
Q Consensus        75 ~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~  128 (210)
                      -|.+|+..|-...+-..+.+|.+++..        .|..|+...+..++.+++.
T Consensus       146 hl~~a~~kgll~F~letlkygg~~~~~--------vls~Av~ynhRkIL~yfi~  191 (192)
T PF03158_consen  146 HLEKAAAKGLLPFVLETLKYGGNVDII--------VLSQAVKYNHRKILDYFIR  191 (192)
T ss_pred             HHHHHHHCCCHHHHHHHHHcCCcccHH--------HHHHHHHhhHHHHHHHhhc
Confidence            467888888888887788888887753        5777888888888877764

These proteins may be involved in promoting survival of infected macrophages [].

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	210
3q9u_C	158	In Silico And In Vitro Co-Evolution Of A High Affin		7e-21
1n0r_A	126	4ank: A Designed Ankyrin Repeat Protein With Four I		5e-20
1n0q_A	93	3ank: A Designed Ankyrin Repeat Protein With Three		2e-19
3noc_D	169	Designed Ankyrin Repeat Protein (Darpin) Binders To		3e-19
2xeh_A	157	Structural Determinants For Improved Thermal Stabil		5e-19
2xee_A	157	Structural Determinants For Improved Thermal Stabil		6e-19
2qyj_A	166	Crystal Structure Of A Designed Full Consensus Anky		6e-19
1mj0_A	166	Sank E3_5: An Artificial Ankyrin Repeat Protein Len		2e-18
4hqd_A	169	Crystal Structure Of Engineered Protein. Northeast		4e-18
3nog_D	169	Designed Ankyrin Repeat Protein (Darpin) Binders To		4e-18
3nog_D	169	Designed Ankyrin Repeat Protein (Darpin) Binders To		1e-04
4gpm_A	169	Crystal Structure Of Engineered Protein. Northeast		6e-17
2p2c_P	169	Inhibition Of Caspase-2 By A Designed Ankyrin Repea		7e-17
4f6r_D	169	Tubulin:stathmin-Like Domain Complex Length = 169		8e-17
4gmr_A	169	Crystal Structure Of Engineered Protein. Northeast		1e-16
2j8s_D	169	Drug Export Pathway Of Multidrug Exporter Acrb Reve		5e-16
2v5q_C	167	Crystal Structure Of Wild-type Plk-1 Kinase Domain		6e-16
2y1l_E	169	Caspase-8 In Complex With Darpin-8.4 Length = 169		8e-16
3zu7_B	169	Crystal Structure Of A Designed Selected Ankyrin Re		9e-16
2bkg_A	166	Crystal Structure Of E3_19 An Designed Ankyrin Repe		1e-15
1svx_A	169	Crystal Structure Of A Designed Selected Ankyrin Re		1e-15
4atz_D	154	Ad5 Knob In Complex With A Designed Ankyrin Repeat		3e-15
4hb5_A	169	Crystal Structure Of Engineered Protein. Northeast		3e-15
2l6b_A	115	Nrc Consensus Ankyrin Repeat Protein Solution Struc		9e-15
2bkk_B	169	Crystal Structure Of Aminoglycoside Phosphotransfer		2e-14
2bkk_B	169	Crystal Structure Of Aminoglycoside Phosphotransfer		2e-13
4dui_A	169	Darpin D1 Binding To Tubulin Beta Chain (not In Com		2e-14
4drx_E	169	Gtp-Tubulin In Complex With A Darpin Length = 169		2e-14
1n11_A	437	D34 Region Of Human Ankyrin-R And Linker Length = 4		4e-14
1n11_A	437	D34 Region Of Human Ankyrin-R And Linker Length = 4		4e-05
2xzt_G	136	Caspase-3 In Complex With Darpin-3.4_i78s Length =		1e-13
2xzd_G	136	Caspase-3 In Complex With An Inhibitory Darpin-3.4		2e-13
2y0b_G	136	Caspase-3 In Complex With An Inhibitory Darpin-3.4_		6e-13
1uoh_A	226	Human Gankyrin Length = 226		1e-12
1qym_A	227	X-Ray Structure Of Human Gankyrin Length = 227		1e-12
3aji_A	231	Structure Of Gankyrin-S6atpase Photo-Cross-Linked S		2e-12
2dvw_A	231	Structure Of The Oncoprotein Gankyrin In Complex Wi		3e-12
3zuv_B	136	Crystal Structure Of A Designed Selected Ankyrin Re		4e-12
3c5r_A	137	Crystal Structure Of The Bard1 Ankyrin Repeat Domai		9e-12
3utm_A	351	Crystal Structure Of A Mouse Tankyrase-Axin Complex		6e-11
2v4h_C	136	Nemo Cc2-Lz Domain - 1d5 Darpin Complex Length = 13		1e-10
2jab_A	136	A Designed Ankyrin Repeat Protein Evolved To Picomo		2e-10
4grg_A	135	Crystal Structure Of Ige Complexed With E2_79, An A		3e-10
3hg0_D	136	Crystal Structure Of A Darpin In Complex With Orf49		4e-10
3hg0_D	136	Crystal Structure Of A Darpin In Complex With Orf49		1e-04
3f6q_A	179	Crystal Structure Of Integrin-Linked Kinase Ankyrin		8e-10
2kbx_A	171	Solution Structure Of Ilk-Pinch Complex Length = 17		8e-10
4a63_B	239	Crystal Structure Of The P73-Aspp2 Complex At 2.6a		2e-09
1ycs_B	239	P53-53bp2 Complex Length = 239		2e-09
3twq_A	175	Crystal Structure Of Arc4 From Human Tankyrase 2 (A		3e-09
3twr_A	165	Crystal Structure Of Arc4 From Human Tankyrase 2 In		4e-09
3twu_A	167	Crystal Structure Of Arc4 From Human Tankyrase 2 In		4e-09
1oy3_D	282	Crystal Structure Of An IkbbetaNF-Kb P65 Homodimer		4e-09
1k3z_D	282	X-Ray Crystal Structure Of The IkbbNF-Kb P65 Homodi		4e-09
1awc_B	153	Mouse Gabp AlphaBETA DOMAIN BOUND TO DNA Length = 1		9e-09
3b7b_A	237	Euhmt1 (Glp) Ankyrin Repeat Domain (Structure 1) Le		2e-08
1bi8_B	166	Mechanism Of G1 Cyclin Dependent Kinase Inhibition		3e-08
1bd8_A	156	Structure Of Cdk Inhibitor P19ink4d Length = 156		3e-08
2dzn_A	228	Crystal Structure Analysis Of Yeast Nas6p Complexed		7e-08
1wg0_A	243	Structural Comparison Of Nas6p Protein Structures I		8e-08
3zkj_A	261	Crystal Structure Of Ankyrin Repeat And Socs Box-co		9e-08
1ixv_A	231	Crystal Structure Analysis Of Homolog Of Oncoprotei		9e-08
4b93_B	269	Complex Of Vamp7 Cytoplasmic Domain With 2nd Ankyri		1e-07
4b93_B	269	Complex Of Vamp7 Cytoplasmic Domain With 2nd Ankyri		3e-04
3so8_A	162	Crystal Structure Of Ankra Length = 162		2e-07
2xen_A	91	Structural Determinants For Improved Thermal Stabil		3e-07
2xen_A	91	Structural Determinants For Improved Thermal Stabil		8e-04
3d9h_A	285	Crystal Structure Of The Splice Variant Of Human As		3e-07
3v2o_A	183	Crystal Structure Of The Peptide Bound Complex Of T		3e-07
3v2x_A	167	Crystal Structure Of The Peptide Bound Complex Of T		3e-07
3aaa_C	123	Crystal Structure Of Actin Capping Protein In Compl		3e-07
1myo_A	118	Solution Structure Of Myotrophin, Nmr, 44 Structure		3e-07
1s70_B	299	Complex Between Protein Ser/thr Phosphatase-1 (delt		4e-07
2vge_A	229	Crystal Structure Of The C-Terminal Region Of Human		6e-07
3v30_A	172	Crystal Structure Of The Peptide Bound Complex Of T		7e-07
2zgg_A	92	Asn-Hydroxylation Stabilises The Ankyrin Repeat Dom		8e-07
3eu9_A	240	The Ankyrin Repeat Domain Of Huntingtin Interacting		1e-06
3uxg_A	172	Crystal Structure Of Rfxank Length = 172		1e-06
2zgd_A	110	Asn-Hydroxylation Stabilises The Ankyrin Repeat Dom		3e-06
1nfi_E	213	I-Kappa-B-AlphaNF-Kappa-B Complex Length = 213		4e-06
1ikn_D	236	IkappabalphaNF-Kappab Complex Length = 236		4e-06
4g8k_A	337	Intact Sensor Domain Of Human Rnase L In The Inacti		5e-06
1wdy_A	285	Crystal Structure Of Ribonuclease Length = 285		6e-06
1blx_B	166	P19ink4dCDK6 COMPLEX Length = 166		9e-06
1ap7_A	168	P19-Ink4d From Mouse, Nmr, 20 Structures Length = 1		9e-06
2rfm_A	192	Structure Of A Thermophilic Ankyrin Repeat Protein		2e-05
2rfa_A	232	Crystal Structure Of The Mouse Trpv6 Ankyrin Repeat		3e-05
3hra_A	201	Crystal Structure Of Ef0377 An Ankyrin Repeat Prote		3e-05
1k1b_A	241	Crystal Structure Of The Ankyrin Repeat Domain Of B		3e-05
2nyj_A	273	Crystal Structure Of The Ankyrin Repeat Domain Of T		4e-05
1mx4_A	168	Structure Of P18ink4c (F82q) Length = 168		6e-05
1mx6_A	168	Structure Of P18ink4c (F92n) Length = 168		6e-05
2f8y_A	223	Crystal Structure Of Human Notch1 Ankyrin Repeats T		7e-05
1yyh_A	253	Crystal Structure Of The Human Notch 1 Ankyrin Doma		9e-05
2f8x_K	256	Crystal Structure Of Activated Notch, Csl And Maml		1e-04
1ot8_A	239	Structure Of The Ankyrin Domain Of The Drosophila N		1e-04
1ihb_A	162	Crystal Structure Of P18-Ink4c(Ink6) Length = 162		1e-04
1bu9_A	168	Solution Structure Of P18-Ink4c, 21 Structures Leng		1e-04
2fo1_E	373	Crystal Structure Of The Csl-Notch-Mastermind Terna		2e-04
2qc9_A	210	Mouse Notch 1 Ankyrin Repeat Intracellular Domain L		2e-04
1mx2_A	168	Structure Of F71n Mutant Of P18ink4c Length = 168		5e-04
2he0_A	253	Crystal Structure Of A Human Notch1 Ankyrin Domain		5e-04

>pdb|3Q9U|C Chain C, In Silico And In Vitro Co-Evolution Of A High Affinity Complementary Protein-Protein Interface Length = 158

Iteration: 1
 Score = 97.1 bits (240), Expect = 7e-21,   Method: Compositional matrix adjust.
 Identities = 50/101 (49%), Positives = 68/101 (67%), Gaps = 6/101 (5%)
Query: 31  TDDRGWTPLHIGARKGDIKLVKQLLDEGMDVNVAAWGPKSKGVTPLHLAAQGGHLEVMDV 90
           TDD G TPLH+ A  G +++V+ LL  G DVN +     S G+TPLHLAA  GHLE+++V
Sbjct: 35  TDDNGLTPLHLAAANGQLEIVEVLLKNGADVNAS----DSAGITPLHLAAYDGHLEIVEV 90
Query: 91  LLERGADIDARTKGACGWTPLHTAAKERKKEAVRFLIENGA 131
           LL+ GAD++A  +   GWTPLH AA   + E V  L+++GA
Sbjct: 91  LLKHGADVNAYDR--AGWTPLHLAALSGQLEIVEVLLKHGA 129

>pdb|1N0R|A Chain A, 4ank: A Designed Ankyrin Repeat Protein With Four Identical Consensus Repeats Length = 126

Iteration: 1
 Score = 94.4 bits (233), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 51/101 (50%), Positives = 66/101 (65%), Gaps = 6/101 (5%)
Query: 32  DDRGWTPLHIGARKGDIKLVKQLLDEGMDVNVAAWGPKSKGVTPLHLAAQGGHLEVMDVL 91
           D  G TPLH+ AR G +++VK LL+ G DVN         G TPLHLAA+ GHLEV+ +L
Sbjct: 32  DKNGRTPLHLAARNGHLEVVKLLLEAGADVNA----KDKNGRTPLHLAARNGHLEVVKLL 87
Query: 92  LERGADIDARTKGACGWTPLHTAAKERKKEAVRFLIENGAF 132
           LE GAD++A+ K   G TPLH AA+    E V+ L+E GA+
Sbjct: 88  LEAGADVNAKDKN--GRTPLHLAARNGHLEVVKLLLEAGAY 126

>pdb|1N0Q|A Chain A, 3ank: A Designed Ankyrin Repeat Protein With Three Identical Consensus Repeats Length = 93

Iteration: 1
 Score = 92.4 bits (228), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 50/98 (51%), Positives = 65/98 (66%), Gaps = 6/98 (6%)
Query: 35  GWTPLHIGARKGDIKLVKQLLDEGMDVNVAAWGPKSKGVTPLHLAAQGGHLEVMDVLLER 94
           G TPLH+ AR G +++VK LL+ G DVN         G TPLHLAA+ GHLEV+ +LLE 
Sbjct: 2   GRTPLHLAARNGHLEVVKLLLEAGADVNA----KDKNGRTPLHLAARNGHLEVVKLLLEA 57
Query: 95  GADIDARTKGACGWTPLHTAAKERKKEAVRFLIENGAF 132
           GAD++A+ K   G TPLH AA+    E V+ L+E GA+
Sbjct: 58  GADVNAKDKN--GRTPLHLAARNGHLEVVKLLLEAGAY 93

>pdb|3NOC|D Chain D, Designed Ankyrin Repeat Protein (Darpin) Binders To Acrb: Plasticity Of The Interface Length = 169

Iteration: 1
 Score = 91.7 bits (226), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 51/100 (51%), Positives = 67/100 (67%), Gaps = 6/100 (6%)
Query: 32  DDRGWTPLHIGARKGDIKLVKQLLDEGMDVNVAAWGPKSKGVTPLHLAAQGGHLEVMDVL 91
           D  GWTPLH+ A  G +++V+ LL  G DVN       S GVTPLHLAA+ GHLE+++VL
Sbjct: 44  DFTGWTPLHLAAHFGHLEIVEVLLKNGADVNA----KDSLGVTPLHLAARRGHLEIVEVL 99
Query: 92  LERGADIDARTKGACGWTPLHTAAKERKKEAVRFLIENGA 131
           L+ GAD++A    + G+TPLH AAK    E V  L++NGA
Sbjct: 100 LKNGADVNASD--SHGFTPLHLAAKRGHLEIVEVLLKNGA 137

>pdb|2XEH|A Chain A, Structural Determinants For Improved Thermal Stability Of Designed Ankyrin Repeat Proteins With A Redesigned C- Capping Module. Length = 157

Iteration: 1
 Score = 90.9 bits (224), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 51/107 (47%), Positives = 71/107 (66%), Gaps = 10/107 (9%)
Query: 32  DDRGWTPLHIGARKGDIKLVKQLLDEGMDVNVAAWGPKSKGVTPLHLAAQGGHLEVMDVL 91
           D  G+TPLH+ AR+G +++V+ LL  G DVN         G TPLHLAA+ GHLE+++VL
Sbjct: 32  DKDGYTPLHLAAREGHLEIVEVLLKAGADVNA----KDKDGYTPLHLAAREGHLEIVEVL 87
Query: 92  LERGADIDARTKGACGWTPLHTAAKERKKEAVRFLIENGAFLPDDIN 138
           L+ GAD++A+ K   G+TPLH AA+E   E V  L++ GA    D+N
Sbjct: 88  LKAGADVNAKDKD--GYTPLHLAAREGHLEIVEVLLKAGA----DVN 128

>pdb|2XEE|A Chain A, Structural Determinants For Improved Thermal Stability Of Designed Ankyrin Repeat Proteins With A Redesigned C- Capping Module. Length = 157

Iteration: 1
 Score = 90.5 bits (223), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 51/107 (47%), Positives = 71/107 (66%), Gaps = 10/107 (9%)
Query: 32  DDRGWTPLHIGARKGDIKLVKQLLDEGMDVNVAAWGPKSKGVTPLHLAAQGGHLEVMDVL 91
           D  G+TPLH+ AR+G +++V+ LL  G DVN         G TPLHLAA+ GHLE+++VL
Sbjct: 32  DKDGYTPLHLAAREGHLEIVEVLLKAGADVNA----KDKDGYTPLHLAAREGHLEIVEVL 87
Query: 92  LERGADIDARTKGACGWTPLHTAAKERKKEAVRFLIENGAFLPDDIN 138
           L+ GAD++A+ K   G+TPLH AA+E   E V  L++ GA    D+N
Sbjct: 88  LKAGADVNAKDKD--GYTPLHLAAREGHLEIVEVLLKAGA----DVN 128

>pdb|2QYJ|A Chain A, Crystal Structure Of A Designed Full Consensus Ankyrin Length = 166

Iteration: 1
 Score = 90.5 bits (223), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 51/107 (47%), Positives = 71/107 (66%), Gaps = 10/107 (9%)
Query: 32  DDRGWTPLHIGARKGDIKLVKQLLDEGMDVNVAAWGPKSKGVTPLHLAAQGGHLEVMDVL 91
           D  G+TPLH+ AR+G +++V+ LL  G DVN         G TPLHLAA+ GHLE+++VL
Sbjct: 44  DKDGYTPLHLAAREGHLEIVEVLLKAGADVNA----KDKDGYTPLHLAAREGHLEIVEVL 99
Query: 92  LERGADIDARTKGACGWTPLHTAAKERKKEAVRFLIENGAFLPDDIN 138
           L+ GAD++A+ K   G+TPLH AA+E   E V  L++ GA    D+N
Sbjct: 100 LKAGADVNAKDK--DGYTPLHLAAREGHLEIVEVLLKAGA----DVN 140

>pdb|1MJ0|A Chain A, Sank E3_5: An Artificial Ankyrin Repeat Protein Length = 166

Iteration: 1
 Score = 88.6 bits (218), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 48/101 (47%), Positives = 66/101 (65%), Gaps = 6/101 (5%)
Query: 31  TDDRGWTPLHIGARKGDIKLVKQLLDEGMDVNVAAWGPKSKGVTPLHLAAQGGHLEVMDV 90
           TD+ G+TPLH+ A  G +++V+ LL  G DVN +       G+TPLHLAA  GHLE+++V
Sbjct: 43  TDNDGYTPLHLAASNGHLEIVEVLLKNGADVNASDL----TGITPLHLAAATGHLEIVEV 98
Query: 91  LLERGADIDARTKGACGWTPLHTAAKERKKEAVRFLIENGA 131
           LL+ GAD++A      G TPLH AAK    E V  L+++GA
Sbjct: 99  LLKHGADVNAYDN--DGHTPLHLAAKYGHLEIVEVLLKHGA 137

>pdb|4HQD|A Chain A, Crystal Structure Of Engineered Protein. Northeast Structural Genomics Consortium Target Or265. Length = 169

Iteration: 1
 Score = 87.8 bits (216), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 55/132 (41%), Positives = 78/132 (59%), Gaps = 10/132 (7%)
Query: 31  TDDRGWTPLHIGARKGDIKLVKQLLDEGMDVNVAAWGPKSKGVTPLHLAAQGGHLEVMDV 90
           +D  G TPLH  A++G  ++VK L+ +G DVN       S G TPLH AA+ GH E++ +
Sbjct: 33  SDSDGRTPLHYAAKEGHKEIVKLLISKGADVNA----KDSDGRTPLHYAAKEGHKEIVKL 88
Query: 91  LLERGADIDARTKGACGWTPLHTAAKERKKEAVRFLIENGAFLPDDINDSRFNPPLHYCP 150
           L+ +GAD++A  K + G TPLH AAKE  KE V+ LI  GA +  + +DS    PL    
Sbjct: 89  LISKGADVNA--KDSDGRTPLHYAAKEGHKEIVKLLISKGADV--NTSDSDGRTPLDLAR 144
Query: 151 SLEWAYEEMMRF 162
             E   EE+++ 
Sbjct: 145 --EHGNEEIVKL 154

>pdb|3NOG|D Chain D, Designed Ankyrin Repeat Protein (Darpin) Binders To Acrb: Plasticity Of The Interface Length = 169

Iteration: 1
 Score = 87.4 bits (215), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 50/101 (49%), Positives = 65/101 (64%), Gaps = 6/101 (5%)
Query: 31  TDDRGWTPLHIGARKGDIKLVKQLLDEGMDVNVAAWGPKSKGVTPLHLAAQGGHLEVMDV 90
           +D  GWTPLH+ A  G +++V+ LL  G DVN       S GVTPLHLAA  GHLEV++V
Sbjct: 43  SDHVGWTPLHLAAYFGHLEIVEVLLKNGADVNA----DDSLGVTPLHLAADRGHLEVVEV 98
Query: 91  LLERGADIDARTKGACGWTPLHTAAKERKKEAVRFLIENGA 131
           LL+ GAD++A      G+TPLH AA     E V  L+++GA
Sbjct: 99  LLKNGADVNANDHN--GFTPLHLAANIGHLEIVEVLLKHGA 137

>pdb|3NOG|D Chain D, Designed Ankyrin Repeat Protein (Darpin) Binders To Acrb: Plasticity Of The Interface Length = 169

Iteration: 1
 Score = 43.1 bits (100), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 28/72 (38%), Positives = 38/72 (52%), Gaps = 4/72 (5%)
Query: 79  AAQGGHLEVMDVLLERGADIDARTKGACGWTPLHTAAKERKKEAVRFLIENGAFLPDDIN 138
           AA+ G  + + +L+  GAD++A      GWTPLH AA     E V  L++NGA +  D  
Sbjct: 21  AARAGQDDEVRILMANGADVNASDH--VGWTPLHLAAYFGHLEIVEVLLKNGADVNAD-- 76
Query: 139 DSRFNPPLHYCP 150
           DS    PLH   
Sbjct: 77  DSLGVTPLHLAA 88

>pdb|4GPM|A Chain A, Crystal Structure Of Engineered Protein. Northeast Structural Genomics Consortium Target Or264. Length = 169

Iteration: 1
 Score = 83.6 bits (205), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 54/132 (40%), Positives = 75/132 (56%), Gaps = 10/132 (7%)
Query: 31  TDDRGWTPLHIGARKGDIKLVKQLLDEGMDVNVAAWGPKSKGVTPLHLAAQGGHLEVMDV 90
           +D  G TPLH  A  G  ++VK L+ +G DVN       S G TPLH AA+ GH EV+ +
Sbjct: 33  SDSDGRTPLHHAAENGHKEVVKLLISKGADVNA----KDSDGRTPLHHAAENGHKEVVKL 88
Query: 91  LLERGADIDARTKGACGWTPLHTAAKERKKEAVRFLIENGAFLPDDINDSRFNPPLHYCP 150
           L+ +GAD++A  K + G TPLH AA+   KE V+ LI  GA +  + +DS    PL    
Sbjct: 89  LISKGADVNA--KDSDGRTPLHHAAENGHKEVVKLLISKGADV--NTSDSDGRTPLDLAR 144
Query: 151 SLEWAYEEMMRF 162
             E   EE+++ 
Sbjct: 145 --EHGNEEVVKL 154

>pdb|2P2C|P Chain P, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat Protein (Darpin) Length = 169

Iteration: 1
 Score = 83.6 bits (205), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 50/101 (49%), Positives = 67/101 (66%), Gaps = 6/101 (5%)
Query: 31  TDDRGWTPLHIGARKGDIKLVKQLLDEGMDVNVAAWGPKSKGVTPLHLAAQGGHLEVMDV 90
           TD  G TPLH+ A+ G +++V+ LL  G DVN  AW   + G TPLHLAA  GHLE+++V
Sbjct: 43  TDWLGHTPLHLAAKTGHLEIVEVLLKYGADVN--AW--DNYGATPLHLAADNGHLEIVEV 98
Query: 91  LLERGADIDARTKGACGWTPLHTAAKERKKEAVRFLIENGA 131
           LL+ GAD++A  K   G+TPLH AA +   E V  L++ GA
Sbjct: 99  LLKHGADVNA--KDYEGFTPLHLAAYDGHLEIVEVLLKYGA 137

>pdb|4F6R|D Chain D, Tubulin:stathmin-Like Domain Complex Length = 169

Iteration: 1
 Score = 83.6 bits (205), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 49/100 (49%), Positives = 63/100 (63%), Gaps = 6/100 (6%)
Query: 32  DDRGWTPLHIGARKGDIKLVKQLLDEGMDVNVAAWGPKSKGVTPLHLAAQGGHLEVMDVL 91
           DD G TPLH+ A KG +++V+ LL  G DVN A       G TPLHLAA  GHLE+++VL
Sbjct: 44  DDSGKTPLHLAAIKGHLEIVEVLLKHGADVNAA----DKMGDTPLHLAALYGHLEIVEVL 99
Query: 92  LERGADIDARTKGACGWTPLHTAAKERKKEAVRFLIENGA 131
           L+ GAD++A      G+TPLH AA     E V  L++ GA
Sbjct: 100 LKNGADVNATD--TYGFTPLHLAADAGHLEIVEVLLKYGA 137

>pdb|4GMR|A Chain A, Crystal Structure Of Engineered Protein. Northeast Structural Genomics Consortium Target Or266. Length = 169

Iteration: 1
 Score = 82.8 bits (203), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 55/132 (41%), Positives = 74/132 (56%), Gaps = 10/132 (7%)
Query: 31  TDDRGWTPLHIGARKGDIKLVKQLLDEGMDVNVAAWGPKSKGVTPLHLAAQGGHLEVMDV 90
           +D  G TPLH+ A  G  ++VK LL +G D N       S G TPLHLAA+ GH EV+ +
Sbjct: 33  SDSDGKTPLHLAAENGHKEVVKLLLSQGADPNAK----DSDGKTPLHLAAENGHKEVVKL 88
Query: 91  LLERGADIDARTKGACGWTPLHTAAKERKKEAVRFLIENGAFLPDDINDSRFNPPLHYCP 150
           LL +GAD +A  K + G TPLH AA+   KE V+ L+  GA    + +DS    PL    
Sbjct: 89  LLSQGADPNA--KDSDGKTPLHLAAENGHKEVVKLLLSQGA--DPNTSDSDGRTPLDLA- 143
Query: 151 SLEWAYEEMMRF 162
             E   EE+++ 
Sbjct: 144 -REHGNEEVVKL 154

>pdb|2J8S|D Chain D, Drug Export Pathway Of Multidrug Exporter Acrb Revealed By Darpin Inhibitors Length = 169

Iteration: 1
 Score = 80.9 bits (198), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 47/101 (46%), Positives = 62/101 (61%), Gaps = 6/101 (5%)
Query: 31  TDDRGWTPLHIGARKGDIKLVKQLLDEGMDVNVAAWGPKSKGVTPLHLAAQGGHLEVMDV 90
            D  GWTPLH+ A  G +++V+ LL  G DVN       + G TPLHLAA  GHLE+++V
Sbjct: 43  ADVVGWTPLHLAAYWGHLEIVEVLLKNGADVNA----YDTLGSTPLHLAAHFGHLEIVEV 98
Query: 91  LLERGADIDARTKGACGWTPLHTAAKERKKEAVRFLIENGA 131
           LL+ GAD++A+     G TPLH AA     E V  L++ GA
Sbjct: 99  LLKNGADVNAKDDN--GITPLHLAANRGHLEIVEVLLKYGA 137

>pdb|2V5Q|C Chain C, Crystal Structure Of Wild-type Plk-1 Kinase Domain In Complex With A Selective Darpin Length = 167

Iteration: 1
 Score = 80.5 bits (197), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 52/134 (38%), Positives = 74/134 (55%), Gaps = 10/134 (7%)
Query: 31  TDDRGWTPLHIGARKGDIKLVKQLLDEGMDVNVAAWGPKSKGVTPLHLAAQGGHLEVMDV 90
            D+ G TPLH+ A  G +++V+ LL  G DV+ A       G TPLHLAA  GHLE+++V
Sbjct: 43  VDNTGLTPLHLAAVSGHLEIVEVLLKHGADVDAA----DVYGFTPLHLAAMTGHLEIVEV 98
Query: 91  LLERGADIDARTKGACGWTPLHTAAKERKKEAVRFLIENGAFLPDDINDSRFNPPLHYCP 150
           LL+ GAD++A      G TPLH AA E   E V  L++ GA    D+N         +  
Sbjct: 99  LLKYGADVNAFDM--TGSTPLHLAADEGHLEIVEVLLKYGA----DVNAQDKFGKTAFDI 152
Query: 151 SLEWAYEEMMRFQR 164
           S++   E++ +  R
Sbjct: 153 SIDNGNEDLAKSCR 166

>pdb|2Y1L|E Chain E, Caspase-8 In Complex With Darpin-8.4 Length = 169

Iteration: 1
 Score = 80.1 bits (196), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 47/100 (47%), Positives = 61/100 (61%), Gaps = 6/100 (6%)
Query: 32  DDRGWTPLHIGARKGDIKLVKQLLDEGMDVNVAAWGPKSKGVTPLHLAAQGGHLEVMDVL 91
           D  GWTPLH+ A  G +++V+ LL  G DVN         G+TPL LAA  GHLE+++VL
Sbjct: 44  DASGWTPLHLAAFNGHLEIVEVLLKNGADVNAV----DHAGMTPLRLAALFGHLEIVEVL 99
Query: 92  LERGADIDARTKGACGWTPLHTAAKERKKEAVRFLIENGA 131
           L+ GAD++A      G TPLH AA     E V  L++NGA
Sbjct: 100 LKNGADVNANDM--EGHTPLHLAAMFGHLEIVEVLLKNGA 137

>pdb|3ZU7|B Chain B, Crystal Structure Of A Designed Selected Ankyrin Repeat Protein In Complex With The Map Kinase Erk2 Length = 169

Iteration: 1
 Score = 80.1 bits (196), Expect = 9e-16,   Method: Compositional matrix adjust.
 Identities = 48/100 (48%), Positives = 64/100 (64%), Gaps = 6/100 (6%)
Query: 32  DDRGWTPLHIGARKGDIKLVKQLLDEGMDVNVAAWGPKSKGVTPLHLAAQGGHLEVMDVL 91
           DD+G TPLH+ A  G  ++V+ LL  G DVN       + G TPLHLAA  GHLE+++VL
Sbjct: 44  DDQGSTPLHLAAWIGHPEIVEVLLKHGADVNA----RDTDGWTPLHLAADNGHLEIVEVL 99
Query: 92  LERGADIDARTKGACGWTPLHTAAKERKKEAVRFLIENGA 131
           L+ GAD++A+   A G TPLH AA     E V  L+++GA
Sbjct: 100 LKYGADVNAQD--AYGLTPLHLAADRGHLEIVEVLLKHGA 137

>pdb|2BKG|A Chain A, Crystal Structure Of E3_19 An Designed Ankyrin Repeat Protein Length = 166

Iteration: 1
 Score = 79.7 bits (195), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 47/100 (47%), Positives = 62/100 (62%), Gaps = 6/100 (6%)
Query: 32  DDRGWTPLHIGARKGDIKLVKQLLDEGMDVNVAAWGPKSKGVTPLHLAAQGGHLEVMDVL 91
           D  G TPLH+ AR G +++V+ LL  G DVN   +     G TPLHLAA+ GHLE+++VL
Sbjct: 44  DTYGDTPLHLAARVGHLEIVEVLLKNGADVNALDF----SGSTPLHLAAKRGHLEIVEVL 99
Query: 92  LERGADIDARTKGACGWTPLHTAAKERKKEAVRFLIENGA 131
           L+ GAD++A      G TPLH AA     E V  L++ GA
Sbjct: 100 LKYGADVNADD--TIGSTPLHLAADTGHLEIVEVLLKYGA 137

>pdb|1SVX|A Chain A, Crystal Structure Of A Designed Selected Ankyrin Repeat Protein In Complex With The Maltose Binding Protein Length = 169

Iteration: 1
 Score = 79.7 bits (195), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 53/122 (43%), Positives = 68/122 (55%), Gaps = 14/122 (11%)
Query: 43  ARKGDIKLVKQLLDEGMDVNVAAWGPKSKGVTPLHLAAQGGHLEVMDVLLERGADIDART 102
           AR G    V+ L+  G DVN A     + G TPLHLAA  GHLE+++VLL+ GAD+DA  
Sbjct: 22  ARAGQDDEVRILMANGADVNAA----DNTGTTPLHLAAYSGHLEIVEVLLKHGADVDASD 77
Query: 103 KGACGWTPLHTAAKERKKEAVRFLIENGAFLPDDIN--DSRFNPPLHYCPSLEWAYEEMM 160
               G+TPLH AA     E V  L++NGA    D+N  DS    PLH     +W Y E++
Sbjct: 78  --VFGYTPLHLAAYWGHLEIVEVLLKNGA----DVNAMDSDGMTPLHLAA--KWGYLEIV 129
Query: 161 RF 162
Sbjct: 130 EV 131

>pdb|4ATZ|D Chain D, Ad5 Knob In Complex With A Designed Ankyrin Repeat Protein Length = 154

Iteration: 1
 Score = 78.2 bits (191), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 47/100 (47%), Positives = 63/100 (63%), Gaps = 6/100 (6%)
Query: 32  DDRGWTPLHIGARKGDIKLVKQLLDEGMDVNVAAWGPKSKGVTPLHLAAQGGHLEVMDVL 91
           D  G TPLH+ A  G +++V+ LL  G DVN       + G TPLHLAA  GHLE+++VL
Sbjct: 32  DHYGRTPLHMAAAVGHLEIVEVLLRNGADVNAV----DTNGTTPLHLAASLGHLEIVEVL 87
Query: 92  LERGADIDARTKGACGWTPLHTAAKERKKEAVRFLIENGA 131
           L+ GAD++A  K A G TPL+ AA     E V  L+++GA
Sbjct: 88  LKYGADVNA--KDATGITPLYLAAYWGHLEIVEVLLKHGA 125

>pdb|4HB5|A Chain A, Crystal Structure Of Engineered Protein. Northeast Structural Genomics Consortium Target Or267. Length = 169

Iteration: 1
 Score = 78.2 bits (191), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 53/132 (40%), Positives = 72/132 (54%), Gaps = 10/132 (7%)
Query: 31  TDDRGWTPLHIGARKGDIKLVKQLLDEGMDVNVAAWGPKSKGVTPLHLAAQGGHLEVMDV 90
           +D  G TPLH  A  G  ++VK LL +G D N       S G TPLH AA+ GH E++ +
Sbjct: 33  SDSDGRTPLHYAAENGHKEIVKLLLSKGADPNAK----DSDGRTPLHYAAENGHKEIVKL 88
Query: 91  LLERGADIDARTKGACGWTPLHTAAKERKKEAVRFLIENGAFLPDDINDSRFNPPLHYCP 150
           LL +GAD +A  K + G TPLH AA+   KE V+ L+  GA    + +DS    PL    
Sbjct: 89  LLSKGADPNA--KDSDGRTPLHYAAENGHKEIVKLLLSKGA--DPNTSDSDGRTPLDLA- 143
Query: 151 SLEWAYEEMMRF 162
             E   EE+++ 
Sbjct: 144 -REHGNEEIVKL 154

>pdb|2L6B|A Chain A, Nrc Consensus Ankyrin Repeat Protein Solution Structure Length = 115

Iteration: 1
 Score = 76.6 bits (187), Expect = 9e-15,   Method: Compositional matrix adjust.
 Identities = 49/105 (46%), Positives = 64/105 (60%), Gaps = 12/105 (11%)
Query: 35  GWTPLHIGARKGDIKLVKQLLDEGMDVNVAAWGPKSK-GVTPLHLAAQGGHLEVMDVLLE 93
           G TPLH  A+ G  + VK+LL +G DVN      +SK G TPLHLAA+ GH E++ +LL 
Sbjct: 9   GNTPLHNAAKNGHAEEVKKLLSKGADVNA-----RSKDGNTPLHLAAKNGHAEIVKLLLA 63
Query: 94  RGADIDARTKGACGWTPLHTAAKERKKEAVRFLIENGAFLPDDIN 138
           +GAD++AR+K   G TP H A K    E V+ L   GA    D+N
Sbjct: 64  KGADVNARSK--DGNTPEHLAKKNGHHEIVKLLDAKGA----DVN 102

>pdb|2BKK|B Chain B, Crystal Structure Of Aminoglycoside Phosphotransferase Aph (3')-Iiia In Complex With The Inhibitor Ar_3a Length = 169

Iteration: 1
 Score = 75.9 bits (185), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 37/81 (45%), Positives = 56/81 (69%), Gaps = 4/81 (4%)
Query: 23  RFFRSVIDTDDRGWTPLHIGARKGDIKLVKQLLDEGMDVNVAAWGPKSKGVTPLHLAAQG 82
           ++   V  +D  GWTPLH+ A +G +++V+ LL  G DVN   +    +G TPLHLAA+ 
Sbjct: 68  KYAADVNASDKSGWTPLHLAAYRGHLEIVEVLLKYGADVNAMDY----QGYTPLHLAAED 123
Query: 83  GHLEVMDVLLERGADIDARTK 103
           GHLE+++VLL+ GAD++A+ K
Sbjct: 124 GHLEIVEVLLKYGADVNAQDK 144

>pdb|2BKK|B Chain B, Crystal Structure Of Aminoglycoside Phosphotransferase Aph (3')-Iiia In Complex With The Inhibitor Ar_3a Length = 169

Iteration: 1
 Score = 72.4 bits (176), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 46/110 (41%), Positives = 59/110 (53%), Gaps = 12/110 (10%)
Query: 43  ARKGDIKLVKQLLDEGMDVNVAAWGPKSKGVTPLHLAAQGGHLEVMDVLLERGADIDART 102
           AR G    V+ L+  G DVN   W     G+TPLHL    GHLE+++VLL+  AD++A  
Sbjct: 22  ARAGQDDEVRILMANGADVNANDW----FGITPLHLVVNNGHLEIIEVLLKYAADVNASD 77
Query: 103 KGACGWTPLHTAAKERKKEAVRFLIENGAFLPDDIN--DSRFNPPLHYCP 150
           K   GWTPLH AA     E V  L++ GA    D+N  D +   PLH   
Sbjct: 78  K--SGWTPLHLAAYRGHLEIVEVLLKYGA----DVNAMDYQGYTPLHLAA 121

>pdb|4DUI|A Chain A, Darpin D1 Binding To Tubulin Beta Chain (not In Complex) Length = 169

Iteration: 1
 Score = 75.1 bits (183), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 47/101 (46%), Positives = 61/101 (60%), Gaps = 6/101 (5%)
Query: 31  TDDRGWTPLHIGARKGDIKLVKQLLDEGMDVNVAAWGPKSKGVTPLHLAAQGGHLEVMDV 90
           TD  G TPLH+ A  G +++V+ LL  G DVN         G TPLHLAA  GHLE+++V
Sbjct: 43  TDASGLTPLHLAATYGHLEIVEVLLKHGADVNAI----DIXGSTPLHLAALIGHLEIVEV 98
Query: 91  LLERGADIDARTKGACGWTPLHTAAKERKKEAVRFLIENGA 131
           LL+ GAD++A      G TPLH AA     E V  L+++GA
Sbjct: 99  LLKHGADVNAVDT--WGDTPLHLAAIMGHLEIVEVLLKHGA 137

>pdb|4DRX|E Chain E, Gtp-Tubulin In Complex With A Darpin Length = 169

Iteration: 1
 Score = 75.1 bits (183), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 47/101 (46%), Positives = 61/101 (60%), Gaps = 6/101 (5%)
Query: 31  TDDRGWTPLHIGARKGDIKLVKQLLDEGMDVNVAAWGPKSKGVTPLHLAAQGGHLEVMDV 90
           TD  G TPLH+ A  G +++V+ LL  G DVN         G TPLHLAA  GHLE+++V
Sbjct: 43  TDASGLTPLHLAATYGHLEIVEVLLKHGADVNAI----DIMGSTPLHLAALIGHLEIVEV 98
Query: 91  LLERGADIDARTKGACGWTPLHTAAKERKKEAVRFLIENGA 131
           LL+ GAD++A      G TPLH AA     E V  L+++GA
Sbjct: 99  LLKHGADVNAVDT--WGDTPLHLAAIMGHLEIVEVLLKHGA 137

>pdb|1N11|A Chain A, D34 Region Of Human Ankyrin-R And Linker Length = 437

Iteration: 1
 Score = 70.5 bits (171), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 37/113 (32%), Positives = 68/113 (60%), Gaps = 7/113 (6%)
Query: 32  DDRGWTPLHIGARKGDIKLVKQLLDEGMDVNVAAWGPKSKGVTPLHLAAQGGHLEVMDVL 91
           +  G TPLH+ A++G + +   L+  G+ V+         G TPLH+A+  G+++++  L
Sbjct: 275 NKSGLTPLHLVAQEGHVPVADVLIKHGVMVDATTR----MGYTPLHVASHYGNIKLVKFL 330
Query: 92  LERGADIDARTKGACGWTPLHTAAKERKKEAVRFLIENGAFLPDDINDSRFNP 144
           L+  AD++A+TK   G++PLH AA++   + V  L++NGA  P++++     P
Sbjct: 331 LQHQADVNAKTK--LGYSPLHQAAQQGHTDIVTLLLKNGAS-PNEVSSDGTTP 380

>pdb|1N11|A Chain A, D34 Region Of Human Ankyrin-R And Linker Length = 437

Iteration: 1
 Score = 44.3 bits (103), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 30/94 (31%), Positives = 49/94 (52%), Gaps = 6/94 (6%)
Query: 73  VTPLHLAAQGGHLEVMDVLLERGADIDARTKGACGWTPLHTAAKERKKEAVRFLIENGAF 132
           +TPLH+A+  GHL ++  LL+RGA  +         TPLH AA+    E  ++L++N A 
Sbjct: 15  LTPLHVASFMGHLPIVKNLLQRGASPNVSNVKV--ETPLHMAARAGHTEVAKYLLQNKAK 72
Query: 133 LPDDINDSRFNPPLHYCPSLEWAYEEMMRFQRES 166
           +     D +   PLH C +    +  M++   E+
Sbjct: 73  VNAKAKDDQT--PLH-CAA-RIGHTNMVKLLLEN 102

>pdb|2XZT|G Chain G, Caspase-3 In Complex With Darpin-3.4_i78s Length = 136

Iteration: 1
 Score = 72.8 bits (177), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 38/73 (52%), Positives = 53/73 (72%), Gaps = 6/73 (8%)
Query: 32  DDRGWTPLHIGARKGDIKLVKQLLDEGMDVNVA-AWGPKSKGVTPLHLAAQGGHLEVMDV 90
           DD G TPLH+ A++G +++V+ LL  G DVN + +WG      TPLHLAA  GHLE+++V
Sbjct: 44  DDAGVTPLHLAAKRGHLEIVEVLLKHGADVNASDSWGR-----TPLHLAATVGHLEIVEV 98
Query: 91  LLERGADIDARTK 103
           LLE GAD++A+ K
Sbjct: 99  LLEYGADVNAQDK 111

>pdb|2XZD|G Chain G, Caspase-3 In Complex With An Inhibitory Darpin-3.4 Length = 136

Iteration: 1
 Score = 72.0 bits (175), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 38/73 (52%), Positives = 52/73 (71%), Gaps = 6/73 (8%)
Query: 32  DDRGWTPLHIGARKGDIKLVKQLLDEGMDVNVA-AWGPKSKGVTPLHLAAQGGHLEVMDV 90
           DD G TPLH+ A++G +++V+ LL  G DVN +  WG      TPLHLAA  GHLE+++V
Sbjct: 44  DDAGVTPLHLAAKRGHLEIVEVLLKHGADVNASDIWGR-----TPLHLAATVGHLEIVEV 98
Query: 91  LLERGADIDARTK 103
           LLE GAD++A+ K
Sbjct: 99  LLEYGADVNAQDK 111

>pdb|2Y0B|G Chain G, Caspase-3 In Complex With An Inhibitory Darpin-3.4_s76r Length = 136

Iteration: 1
 Score = 70.5 bits (171), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 38/73 (52%), Positives = 51/73 (69%), Gaps = 6/73 (8%)
Query: 32  DDRGWTPLHIGARKGDIKLVKQLLDEGMDVNV-AAWGPKSKGVTPLHLAAQGGHLEVMDV 90
           DD G TPLH+ A++G +++V+ LL  G DVN    WG      TPLHLAA  GHLE+++V
Sbjct: 44  DDAGVTPLHLAAKRGHLEIVEVLLKHGADVNARDIWGR-----TPLHLAATVGHLEIVEV 98
Query: 91  LLERGADIDARTK 103
           LLE GAD++A+ K
Sbjct: 99  LLEYGADVNAQDK 111

>pdb|1UOH|A Chain A, Human Gankyrin Length = 226

Iteration: 1
 Score = 69.7 bits (169), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 46/120 (38%), Positives = 61/120 (50%), Gaps = 8/120 (6%)
Query: 28  VIDTDDRGWTPLHIGARKGDIKLVKQLLDEGMDVNVAAWGPKSKGVTPLHLAAQGGHLEV 87
           V D DD GW+PLHI A  G  ++VK LL +G  VN         G TPLH AA     E+
Sbjct: 66  VNDKDDAGWSPLHIAASAGRDEIVKALLGKGAQVNAV----NQNGCTPLHYAASKNRHEI 121
Query: 88  MDVLLERGADIDARTKGACGWTPLHTAAKERKKEAVRFLIENGAFLPDDINDSRFNPPLH 147
             +LLE GA+ DA+       T +H AA +   + +  L+   A    +I D+  N PLH
Sbjct: 122 AVMLLEGGANPDAKDHYEA--TAMHRAAAKGNLKMIHILLYYKA--STNIQDTEGNTPLH 177

>pdb|1QYM|A Chain A, X-Ray Structure Of Human Gankyrin Length = 227

Iteration: 1
 Score = 69.7 bits (169), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 46/120 (38%), Positives = 61/120 (50%), Gaps = 8/120 (6%)
Query: 28  VIDTDDRGWTPLHIGARKGDIKLVKQLLDEGMDVNVAAWGPKSKGVTPLHLAAQGGHLEV 87
           V D DD GW+PLHI A  G  ++VK LL +G  VN         G TPLH AA     E+
Sbjct: 67  VNDKDDAGWSPLHIAASAGRDEIVKALLGKGAQVNAV----NQNGCTPLHYAASKNRHEI 122
Query: 88  MDVLLERGADIDARTKGACGWTPLHTAAKERKKEAVRFLIENGAFLPDDINDSRFNPPLH 147
             +LLE GA+ DA+       T +H AA +   + +  L+   A    +I D+  N PLH
Sbjct: 123 AVMLLEGGANPDAKDHYEA--TAMHRAAAKGNLKMIHILLYYKA--STNIQDTEGNTPLH 178

>pdb|3AJI|A Chain A, Structure Of Gankyrin-S6atpase Photo-Cross-Linked Site-Specifically, And Incoporated By Genetic Code Expansion Length = 231

Iteration: 1
 Score = 68.6 bits (166), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 48/120 (40%), Positives = 61/120 (50%), Gaps = 8/120 (6%)
Query: 28  VIDTDDRGWTPLHIGARKGDIKLVKQLLDEGMDVNVAAWGPKSKGVTPLHLAAQGGHLEV 87
           V D DD GW+PLHI A  G  ++VK LL +G  VN         G TPLH AA     E+
Sbjct: 66  VNDKDDAGWSPLHIAASAGXDEIVKALLVKGAHVNAV----NQNGCTPLHYAASKNRHEI 121
Query: 88  MDVLLERGADIDARTKGACGWTPLHTAAKERKKEAVRFLIENGAFLPDDINDSRFNPPLH 147
             +LLE GA+ DA  K     T +H AA +   + V  L+   A    +I D+  N PLH
Sbjct: 122 AVMLLEGGANPDA--KDHYDATAMHRAAAKGNLKMVHILLFYKA--STNIQDTEGNTPLH 177

>pdb|2DVW|A Chain A, Structure Of The Oncoprotein Gankyrin In Complex With S6 Atpase Of The 26s Proteasome Length = 231

Iteration: 1
 Score = 68.2 bits (165), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 48/120 (40%), Positives = 61/120 (50%), Gaps = 8/120 (6%)
Query: 28  VIDTDDRGWTPLHIGARKGDIKLVKQLLDEGMDVNVAAWGPKSKGVTPLHLAAQGGHLEV 87
           V D DD GW+PLHI A  G  ++VK LL +G  VN         G TPLH AA     E+
Sbjct: 66  VNDKDDAGWSPLHIAASAGRDEIVKALLVKGAHVNAV----NQNGCTPLHYAASKNRHEI 121
Query: 88  MDVLLERGADIDARTKGACGWTPLHTAAKERKKEAVRFLIENGAFLPDDINDSRFNPPLH 147
             +LLE GA+ DA  K     T +H AA +   + V  L+   A    +I D+  N PLH
Sbjct: 122 AVMLLEGGANPDA--KDHYDATAMHRAAAKGNLKMVHILLFYKA--STNIQDTEGNTPLH 177

>pdb|3ZUV|B Chain B, Crystal Structure Of A Designed Selected Ankyrin Repeat Protein In Complex With The Phosphorylated Map Kinase Erk2 Length = 136

Iteration: 1
 Score = 67.8 bits (164), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 35/72 (48%), Positives = 51/72 (70%), Gaps = 4/72 (5%)
Query: 32  DDRGWTPLHIGARKGDIKLVKQLLDEGMDVNVAAWGPKSKGVTPLHLAAQGGHLEVMDVL 91
           D+ G TPLH+ A+ G +++V+ LL  G DVN       + G+TPLHLAA  GHLE+++VL
Sbjct: 44  DEDGLTPLHLAAQLGHLEIVEVLLKYGADVNA----EDNFGITPLHLAAIRGHLEIVEVL 99
Query: 92  LERGADIDARTK 103
           L+ GAD++A+ K
Sbjct: 100 LKHGADVNAQDK 111

>pdb|3C5R|A Chain A, Crystal Structure Of The Bard1 Ankyrin Repeat Domain And Its Functional Consequences Length = 137

Iteration: 1
 Score = 66.6 bits (161), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 44/104 (42%), Positives = 58/104 (55%), Gaps = 12/104 (11%)
Query: 31  TDDRGWTPLHIGARKGDIKLVKQLLDEGMDVNV---AAWGPKSKGVTPLHLAAQGGHLEV 87
           T+ RG T LHI + KGDI  V+ LL  G D NV   A W       TPLH A   GHL+V
Sbjct: 6   TNHRGETLLHIASIKGDIPSVEYLLQNGSDPNVKDHAGW-------TPLHEACNHGHLKV 58
Query: 88  MDVLLERGADIDARTKGACGWTPLHTAAKERKKEAVRFLIENGA 131
           +++LL+  A ++  T G    +PLH AAK    + V+ L+  GA
Sbjct: 59  VELLLQHKALVN--TTGYQNDSPLHDAAKNGHVDIVKLLLSYGA 100

>pdb|3UTM|A Chain A, Crystal Structure Of A Mouse Tankyrase-Axin Complex Length = 351

Iteration: 1
 Score = 63.9 bits (154), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 38/101 (37%), Positives = 56/101 (55%), Gaps = 6/101 (5%)
Query: 31  TDDRGWTPLHIGARKGDIKLVKQLLDEGMDVNVAAWGPKSKGVTPLHLAAQGGHLEVMDV 90
           +D R  TPLH+ A    +++V+ LL  G DV+    G    G+ PLH A   GH EV ++
Sbjct: 54  SDGRKSTPLHLAAGYNRVRIVQLLLQHGADVHAKDKG----GLVPLHNACSYGHYEVTEL 109
Query: 91  LLERGADIDARTKGACGWTPLHTAAKERKKEAVRFLIENGA 131
           LL+ GA ++A       +TPLH AA + + E    L+ +GA
Sbjct: 110 LLKHGACVNAMD--LWQFTPLHEAASKNRVEVCSLLLSHGA 148

>pdb|2V4H|C Chain C, Nemo Cc2-Lz Domain - 1d5 Darpin Complex Length = 136

Iteration: 1
 Score = 62.8 bits (151), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 34/73 (46%), Positives = 48/73 (65%), Gaps = 4/73 (5%)
Query: 31  TDDRGWTPLHIGARKGDIKLVKQLLDEGMDVNVAAWGPKSKGVTPLHLAAQGGHLEVMDV 90
            D +G TPLH+ A    +++V+ LL  G DVN       + G TPLHLAA  GHLE+++V
Sbjct: 43  NDRKGNTPLHLAADYDHLEIVEVLLKHGADVNA----HDNDGSTPLHLAALFGHLEIVEV 98
Query: 91  LLERGADIDARTK 103
           LL+ GAD++A+ K
Sbjct: 99  LLKHGADVNAQDK 111

>pdb|2JAB|A Chain A, A Designed Ankyrin Repeat Protein Evolved To Picomolar Affinity To Her2 Length = 136

Iteration: 1
 Score = 62.0 bits (149), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 33/72 (45%), Positives = 47/72 (65%), Gaps = 4/72 (5%)
Query: 32  DDRGWTPLHIGARKGDIKLVKQLLDEGMDVNVAAWGPKSKGVTPLHLAAQGGHLEVMDVL 91
           D+ G TPL++    G +++V+ LL  G DVN       + G TPLHLAA  GHLE+ +VL
Sbjct: 44  DEYGLTPLYLATAHGHLEIVEVLLKNGADVNAV----DAIGFTPLHLAAFIGHLEIAEVL 99
Query: 92  LERGADIDARTK 103
           L+ GAD++A+ K
Sbjct: 100 LKHGADVNAQDK 111

>pdb|4GRG|A Chain A, Crystal Structure Of Ige Complexed With E2_79, An Anti-Ige Inhibitor Length = 135

Iteration: 1
 Score = 61.6 bits (148), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 33/69 (47%), Positives = 46/69 (66%), Gaps = 4/69 (5%)
Query: 35  GWTPLHIGARKGDIKLVKQLLDEGMDVNVAAWGPKSKGVTPLHLAAQGGHLEVMDVLLER 94
           G TPLH+ A  G +++V+ LL  G DVN       + G TPLHLAA   HLE+++VLL+ 
Sbjct: 47  GHTPLHLAAMLGHLEIVEVLLKNGADVNATG----NTGRTPLHLAAWADHLEIVEVLLKH 102
Query: 95  GADIDARTK 103
           GAD++A+ K
Sbjct: 103 GADVNAQDK 111

>pdb|3HG0|D Chain D, Crystal Structure Of A Darpin In Complex With Orf49 From Lactococcal Phage Tp901-1 Length = 136

Iteration: 1
 Score = 61.2 bits (147), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 33/72 (45%), Positives = 46/72 (63%), Gaps = 4/72 (5%)
Query: 32  DDRGWTPLHIGARKGDIKLVKQLLDEGMDVNVAAWGPKSKGVTPLHLAAQGGHLEVMDVL 91
           D  G TPLH+ A    +++V+ LL  G DVN       + G TPLHL A  GHLE+++VL
Sbjct: 44  DKVGLTPLHLAAMNDHLEIVEVLLKNGADVNAI----DAIGETPLHLVAMYGHLEIVEVL 99
Query: 92  LERGADIDARTK 103
           L+ GAD++A+ K
Sbjct: 100 LKHGADVNAQDK 111

>pdb|3HG0|D Chain D, Crystal Structure Of A Darpin In Complex With Orf49 From Lactococcal Phage Tp901-1 Length = 136

Iteration: 1
 Score = 42.7 bits (99), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 28/74 (37%), Positives = 39/74 (52%), Gaps = 8/74 (10%)
Query: 79  AAQGGHLEVMDVLLERGADIDARTKGACGWTPLHTAAKERKKEAVRFLIENGAFLPDDIN 138
           AA+ G  + + +L+  GAD++A  K   G TPLH AA     E V  L++NGA    D+N
Sbjct: 21  AARAGQDDEVRILMANGADVNAEDK--VGLTPLHLAAMNDHLEIVEVLLKNGA----DVN 74
Query: 139 --DSRFNPPLHYCP 150
             D+    PLH   
Sbjct: 75  AIDAIGETPLHLVA 88

>pdb|3F6Q|A Chain A, Crystal Structure Of Integrin-Linked Kinase Ankyrin Repeat Domain In Complex With Pinch1 Lim1 Domain Length = 179

Iteration: 1
 Score = 60.1 bits (144), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 38/102 (37%), Positives = 55/102 (53%), Gaps = 6/102 (5%)
Query: 32  DDRGWTPLHIGARKGDIKLVKQLLDEGMDVNVAAWGPKSKGVTPLHLAAQGGHLEVMDVL 91
           DD G++PLH   R+G   +V+ L+  G  +NV   G      TPLHLAA  GH +++  L
Sbjct: 36  DDHGFSPLHWACREGRSAVVEMLIMRGARINVMNRGDD----TPLHLAASHGHRDIVQKL 91
Query: 92  LERGADIDARTKGACGWTPLHTAAKERKKEAVRFLIENGAFL 133
           L+  ADI+A  +   G  PLH A    + +    L+ NGA +
Sbjct: 92  LQYKADINAVNEH--GNVPLHYACFWGQDQVAEDLVANGALV 131

>pdb|2KBX|A Chain A, Solution Structure Of Ilk-Pinch Complex Length = 171

Iteration: 1
 Score = 60.1 bits (144), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 38/102 (37%), Positives = 55/102 (53%), Gaps = 6/102 (5%)
Query: 32  DDRGWTPLHIGARKGDIKLVKQLLDEGMDVNVAAWGPKSKGVTPLHLAAQGGHLEVMDVL 91
           DD G++PLH   R+G   +V+ L+  G  +NV   G      TPLHLAA  GH +++  L
Sbjct: 31  DDHGFSPLHWACREGRSAVVEMLIMRGARINVMNRGDD----TPLHLAASHGHRDIVQKL 86
Query: 92  LERGADIDARTKGACGWTPLHTAAKERKKEAVRFLIENGAFL 133
           L+  ADI+A  +   G  PLH A    + +    L+ NGA +
Sbjct: 87  LQYKADINAVNEH--GNVPLHYACFWGQDQVAEDLVANGALV 126

>pdb|4A63|B Chain B, Crystal Structure Of The P73-Aspp2 Complex At 2.6a Resolution Length = 239

Iteration: 1
 Score = 58.9 bits (141), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 35/118 (29%), Positives = 61/118 (51%), Gaps = 7/118 (5%)
Query: 45  KGDIKLVKQLLDEGMDVNVAAWGPKSKGVTPLHLAAQGGHLEVMDVLLERGADIDARTKG 104
           +G+  LV++++ E  D ++    P  +G+T LH A   GH E++  L++ G +++A    
Sbjct: 47  EGEFDLVQRIIYEVDDPSL----PNDEGITALHNAVCAGHTEIVKFLVQFGVNVNAADSD 102
Query: 105 ACGWTPLHTAAKERKKEAVRFLIENGAFLPDDINDSRFNPPLHYCPSLEWAYEEMMRF 162
             GWTPLH AA     +  +FL+E+GA +   +  S        C  +E  Y +  +F
Sbjct: 103 --GWTPLHCAASCNNVQVCKFLVESGAAV-FAMTYSDMQTAADKCEEMEEGYTQCSQF 157

>pdb|1YCS|B Chain B, P53-53bp2 Complex Length = 239

Iteration: 1
 Score = 58.5 bits (140), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 35/118 (29%), Positives = 61/118 (51%), Gaps = 7/118 (5%)
Query: 45  KGDIKLVKQLLDEGMDVNVAAWGPKSKGVTPLHLAAQGGHLEVMDVLLERGADIDARTKG 104
           +G+  LV++++ E  D ++    P  +G+T LH A   GH E++  L++ G +++A    
Sbjct: 47  EGEFDLVQRIIYEVDDPSL----PNDEGITALHNAVCAGHTEIVKFLVQFGVNVNAADSD 102
Query: 105 ACGWTPLHTAAKERKKEAVRFLIENGAFLPDDINDSRFNPPLHYCPSLEWAYEEMMRF 162
             GWTPLH AA     +  +FL+E+GA +   +  S        C  +E  Y +  +F
Sbjct: 103 --GWTPLHCAASCNNVQVCKFLVESGAAV-FAMTYSDMQTAADKCEEMEEGYTQCSQF 157

>pdb|3TWQ|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 (Apo Form) Length = 175

Iteration: 1
 Score = 58.2 bits (139), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 45/135 (33%), Positives = 68/135 (50%), Gaps = 14/135 (10%)
Query: 30  DTDDRGWTPLHIGARKGDIKLVKQLLDEGMDVNVAAWGPKSKGVTPLHLAAQGGHLEVMD 89
           D + R  TPLH  A    + +V+ LL  G DV+    G    G+ PLH A   GH EV +
Sbjct: 41  DIEGRQSTPLHFAAGYNRVSVVEYLLQHGADVHAKDKG----GLVPLHNACSYGHYEVAE 96
Query: 90  VLLERGADIDARTKGACGW--TPLHTAAKERKKEAVRFLIENGAFLPDDINDSR-FNPPL 146
           +L++ GA ++     A  W  TPLH AA + K E  + L+++GA   D    +R  N PL
Sbjct: 97  LLVKHGAVVNV----ADLWKFTPLHEAAAKGKYEICKLLLQHGA---DPTKKNRDGNTPL 149
Query: 147 HYCPSLEWAYEEMMR 161
                 +   ++++R
Sbjct: 150 DLVKDGDTDIQDLLR 164

>pdb|3TWR|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In Complex With Peptide From Human 3bp2 Length = 165

Iteration: 1
 Score = 58.2 bits (139), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 45/135 (33%), Positives = 68/135 (50%), Gaps = 14/135 (10%)
Query: 30  DTDDRGWTPLHIGARKGDIKLVKQLLDEGMDVNVAAWGPKSKGVTPLHLAAQGGHLEVMD 89
           D + R  TPLH  A    + +V+ LL  G DV+    G    G+ PLH A   GH EV +
Sbjct: 37  DIEGRQSTPLHFAAGYNRVSVVEYLLQHGADVHAKDKG----GLVPLHNACSYGHYEVAE 92
Query: 90  VLLERGADIDARTKGACGW--TPLHTAAKERKKEAVRFLIENGAFLPDDINDSR-FNPPL 146
           +L++ GA ++     A  W  TPLH AA + K E  + L+++GA   D    +R  N PL
Sbjct: 93  LLVKHGAVVNV----ADLWKFTPLHEAAAKGKYEICKLLLQHGA---DPTKKNRDGNTPL 145
Query: 147 HYCPSLEWAYEEMMR 161
                 +   ++++R
Sbjct: 146 DLVKDGDTDIQDLLR 160

>pdb|3TWU|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In Complex With Peptide From Human Mcl1 Length = 167

Iteration: 1
 Score = 57.8 bits (138), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 45/135 (33%), Positives = 68/135 (50%), Gaps = 14/135 (10%)
Query: 30  DTDDRGWTPLHIGARKGDIKLVKQLLDEGMDVNVAAWGPKSKGVTPLHLAAQGGHLEVMD 89
           D + R  TPLH  A    + +V+ LL  G DV+    G    G+ PLH A   GH EV +
Sbjct: 39  DIEGRQSTPLHFAAGYNRVSVVEYLLQHGADVHAKDKG----GLVPLHNACSYGHYEVAE 94
Query: 90  VLLERGADIDARTKGACGW--TPLHTAAKERKKEAVRFLIENGAFLPDDINDSR-FNPPL 146
           +L++ GA ++     A  W  TPLH AA + K E  + L+++GA   D    +R  N PL
Sbjct: 95  LLVKHGAVVNV----ADLWKFTPLHEAAAKGKYEICKLLLQHGA---DPTKKNRDGNTPL 147
Query: 147 HYCPSLEWAYEEMMR 161
                 +   ++++R
Sbjct: 148 DLVKDGDTDIQDLLR 162

>pdb|1OY3|D Chain D, Crystal Structure Of An IkbbetaNF-Kb P65 Homodimer Complex Length = 282

Iteration: 1
 Score = 57.8 bits (138), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 40/105 (38%), Positives = 54/105 (51%), Gaps = 5/105 (4%)
Query: 35  GWTPLHIGARKGDIKLVKQLLDEGMDVNVAAWGPKSKGVTPLHLAAQGGHLEVMDVLLER 94
           G TPLH+     D ++V+ L D G D+N       + G TPLHLA +     V+++LL+ 
Sbjct: 158 GHTPLHVAVIHKDAEMVRLLRDAGADLNKPE---PTCGRTPLHLAVEAQAASVLELLLKA 214
Query: 95  GADIDARTKGACGWTPLHTAAKERKKEAVRFLIENGAFLPDDIND 139
           GAD  AR  G  G TPL +A         R L  +GA  P+D  D
Sbjct: 215 GADPTARMYG--GRTPLGSALLRPNPILARLLRAHGAPEPEDGGD 257

>pdb|1K3Z|D Chain D, X-Ray Crystal Structure Of The IkbbNF-Kb P65 Homodimer Complex Length = 282

Iteration: 1
 Score = 57.8 bits (138), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 40/105 (38%), Positives = 54/105 (51%), Gaps = 5/105 (4%)
Query: 35  GWTPLHIGARKGDIKLVKQLLDEGMDVNVAAWGPKSKGVTPLHLAAQGGHLEVMDVLLER 94
           G TPLH+     D ++V+ L D G D+N       + G TPLHLA +     V+++LL+ 
Sbjct: 158 GHTPLHVAVIHKDAEMVRLLRDAGADLNKPE---PTCGRTPLHLAVEAQAASVLELLLKA 214
Query: 95  GADIDARTKGACGWTPLHTAAKERKKEAVRFLIENGAFLPDDIND 139
           GAD  AR  G  G TPL +A         R L  +GA  P+D  D
Sbjct: 215 GADPTARMYG--GRTPLGSALLRPNPILARLLRAHGAPEPEDGGD 257

>pdb|1AWC|B Chain B, Mouse Gabp AlphaBETA DOMAIN BOUND TO DNA Length = 153

Iteration: 1
 Score = 56.6 bits (135), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 37/101 (36%), Positives = 54/101 (53%), Gaps = 6/101 (5%)
Query: 31  TDDRGWTPLHIGARKGDIKLVKQLLDEGMDVNVAAWGPKSKGVTPLHLAAQGGHLEVMDV 90
           TD  G +PLH+ A+ G     + LL  G+  +      +    TPLH+AA  GH  +++V
Sbjct: 30  TDWLGTSPLHLAAQYGHFSTTEVLLRAGVSRDARTKVDR----TPLHMAASEGHANIVEV 85
Query: 91  LLERGADIDARTKGACGWTPLHTAAKERKKEAVRFLIENGA 131
           LL+ GAD++A  K     T LH A +   +E V  LI+ GA
Sbjct: 86  LLKHGADVNA--KDMLKMTALHWATEHNHQEVVELLIKYGA 124

>pdb|3B7B|A Chain A, Euhmt1 (Glp) Ankyrin Repeat Domain (Structure 1) Length = 237

Iteration: 1
 Score = 50.1 bits (118), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 39/138 (28%), Positives = 66/138 (47%), Gaps = 12/138 (8%)
Query: 32  DDRGWTPLHIGARKGDIKLVKQLLDEGMDVNVAAWGPKSKGVTPLHLAAQGGHLEVMDVL 91
           DD GWTP+        + LVK LL +G D+N+      ++    LH AA  G +++ ++L
Sbjct: 108 DDGGWTPMIWATEYKHVDLVKLLLSKGSDINI----RDNEENICLHWAAFSGCVDIAEIL 163
Query: 92  LERGADIDARTKGACGWTPLHTAAKERKKEAVRFLIENGAFLPDDINDSRFNPPLHYCPS 151
           L    D+ A      G +PLH AA+E + + V   +   + +   + +     PL  C S
Sbjct: 164 LAAKCDLHAVNIH--GDSPLHIAARENRYDCVVLFLSRDSDVT--LKNKEGETPLQ-CAS 218
Query: 152 LE---WAYEEMMRFQRES 166
           L    W+  +M +  ++S
Sbjct: 219 LNSQVWSALQMSKALQDS 236

>pdb|1BI8|B Chain B, Mechanism Of G1 Cyclin Dependent Kinase Inhibition From The Structures Cdk6-P19ink4d Inhibitor Complex Length = 166

Iteration: 1
 Score = 55.1 bits (131), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 35/95 (36%), Positives = 48/95 (50%), Gaps = 7/95 (7%)
Query: 32  DDRGWTPLHIGARKGDIKLVKQLLDEGMDVNVAAWGPKSKGVTPLHLAAQGGHLEVMDVL 91
           D  G +P+H  AR G +  +K L++ G DVNV    P   G  P+HLA Q GH  V+  L
Sbjct: 71  DTSGTSPVHDAARTGFLDTLKVLVEHGADVNV----PDGTGALPIHLAVQEGHTAVVSFL 126
Query: 92  LERGADIDARTKGACGWTPLHTAAKERKKEAVRFL 126
               A+ D   + A G TPL  A +   ++ V  L
Sbjct: 127 ---AAESDLHRRDARGLTPLELALQRGAQDLVDIL 158

>pdb|1BD8|A Chain A, Structure Of Cdk Inhibitor P19ink4d Length = 156

Iteration: 1
 Score = 54.7 bits (130), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 35/95 (36%), Positives = 48/95 (50%), Gaps = 7/95 (7%)
Query: 32  DDRGWTPLHIGARKGDIKLVKQLLDEGMDVNVAAWGPKSKGVTPLHLAAQGGHLEVMDVL 91
           D  G +P+H  AR G +  +K L++ G DVNV    P   G  P+HLA Q GH  V+  L
Sbjct: 65  DTSGTSPVHDAARTGFLDTLKVLVEHGADVNV----PDGTGALPIHLAVQEGHTAVVSFL 120
Query: 92  LERGADIDARTKGACGWTPLHTAAKERKKEAVRFL 126
               A+ D   + A G TPL  A +   ++ V  L
Sbjct: 121 ---AAESDLHRRDARGLTPLELALQRGAQDLVDIL 152

>pdb|2DZN|A Chain A, Crystal Structure Analysis Of Yeast Nas6p Complexed With The Proteasome Subunit, Rpt3 Length = 228

Iteration: 1
 Score = 53.5 bits (127), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 41/125 (32%), Positives = 58/125 (46%), Gaps = 3/125 (2%)
Query: 28  VIDTDDRGWTPLHIGARKGDIKLVKQLLDEGMDVNVAAWGPKSKGVTPLHLAAQGGHLEV 87
           ++  D  G  PLH        ++   LL +  +VN+  + P   G TP H+A   G+LEV
Sbjct: 29  LLQKDQDGRIPLHWSVSFQAHEITSFLLSKMENVNLDDY-PDDSGWTPFHIACSVGNLEV 87
Query: 88  MDVLLERGADIDARTKGACGWTPLHTAAKERKKEAVRFLIENGAFLPDDINDSRFNPPLH 147
           +  L +R    D       G T LH A  ++  E  +FLIENGA +   I D     PLH
Sbjct: 88  VKSLYDRPLKPDLNKITNQGVTCLHLAVGKKWFEVSQFLIENGASV--RIKDKFNQIPLH 145
Query: 148 YCPSL 152
              S+
Sbjct: 146 RAASV 150

>pdb|1WG0|A Chain A, Structural Comparison Of Nas6p Protein Structures In Two Different Crystal Forms Length = 243

Iteration: 1
 Score = 53.5 bits (127), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 41/125 (32%), Positives = 58/125 (46%), Gaps = 3/125 (2%)
Query: 28  VIDTDDRGWTPLHIGARKGDIKLVKQLLDEGMDVNVAAWGPKSKGVTPLHLAAQGGHLEV 87
           ++  D  G  PLH        ++   LL +  +VN+  + P   G TP H+A   G+LEV
Sbjct: 29  LLQKDQDGRIPLHWSVSFQAHEITSFLLSKMENVNLDDY-PDDSGWTPFHIACSVGNLEV 87
Query: 88  MDVLLERGADIDARTKGACGWTPLHTAAKERKKEAVRFLIENGAFLPDDINDSRFNPPLH 147
           +  L +R    D       G T LH A  ++  E  +FLIENGA +   I D     PLH
Sbjct: 88  VKSLYDRPLKPDLNKITNQGVTCLHLAVGKKWFEVSQFLIENGASV--RIKDKFNQIPLH 145
Query: 148 YCPSL 152
              S+
Sbjct: 146 RAASV 150

>pdb|3ZKJ|A Chain A, Crystal Structure Of Ankyrin Repeat And Socs Box-containing Protein 9 (asb9) In Complex With Elonginb And Elonginc Length = 261

Iteration: 1
 Score = 53.5 bits (127), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 35/113 (30%), Positives = 56/113 (49%), Gaps = 11/113 (9%)
Query: 36  WTPLHIGARKGDIKLVKQLLDEGMDVNVAAWGPKSKGVTPLHLAAQGGHLEVMDVLLERG 95
           W+P+H  A  G    ++ L+ +G  VN+      +  V+PLH A  GGHL  + +LL+ G
Sbjct: 4   WSPMHEAAIHGHQLSLRNLISQGWAVNIIT----ADHVSPLHEACLGGHLSCVKILLKHG 59
Query: 96  ADIDARTKGACGW-TPLHTAAKERKKEAVRFLIENGAFLPDDINDSRFNPPLH 147
           A ++  T     W TPL  A      + V  L+++GA +     +S    P+H
Sbjct: 60  AQVNGVTA---DWHTPLFNACVSGSWDCVNLLLQHGASVQP---ESDLASPIH 106

>pdb|1IXV|A Chain A, Crystal Structure Analysis Of Homolog Of Oncoprotein Gankyrin, An Interactor Of Rb And Cdk46 Length = 231

Iteration: 1
 Score = 53.5 bits (127), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 41/125 (32%), Positives = 58/125 (46%), Gaps = 3/125 (2%)
Query: 28  VIDTDDRGWTPLHIGARKGDIKLVKQLLDEGMDVNVAAWGPKSKGVTPLHLAAQGGHLEV 87
           ++  D  G  PLH        ++   LL +  +VN+  + P   G TP H+A   G+LEV
Sbjct: 29  LLQKDQDGRIPLHWSVSFQAHEITSFLLSKMENVNLDDY-PDDSGWTPFHIACSVGNLEV 87
Query: 88  MDVLLERGADIDARTKGACGWTPLHTAAKERKKEAVRFLIENGAFLPDDINDSRFNPPLH 147
           +  L +R    D       G T LH A  ++  E  +FLIENGA +   I D     PLH
Sbjct: 88  VKSLYDRPLKPDLNKITNQGVTCLHLAVGKKWFEVSQFLIENGASV--RIKDKFNQIPLH 145
Query: 148 YCPSL 152
              S+
Sbjct: 146 RAASV 150

>pdb|4B93|B Chain B, Complex Of Vamp7 Cytoplasmic Domain With 2nd Ankyrin Repeat Domain Of Varp Length = 269

Iteration: 1
 Score = 53.1 bits (126), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 38/117 (32%), Positives = 56/117 (47%), Gaps = 8/117 (6%)
Query: 31  TDDRGWTPLHIGARKGDIKLVKQLLDEGMDVNVAAWGPKSKGVTPLHLAAQGGHLEVMDV 90
           T   G +PLH+ A  G   L+  LL  G +    A    +    PLHLA Q GH +V+  
Sbjct: 82  TSQDGSSPLHVAALHGRADLIPLLLKHGAN----AGARNADQAVPLHLACQQGHFQVVKC 137
Query: 91  LLERGADIDARTKGACGWTPLHTAAKERKKEAVRFLIENGAFLPDDINDSRFNPPLH 147
           LL+  A  +   K   G TPL  A      E V  L+++GA +  + ++++ N  LH
Sbjct: 138 LLDSNAKPN--KKDLSGNTPLIYACSGGHHELVALLLQHGASI--NASNNKGNTALH 190

>pdb|4B93|B Chain B, Complex Of Vamp7 Cytoplasmic Domain With 2nd Ankyrin Repeat Domain Of Varp Length = 269

Iteration: 1
 Score = 41.6 bits (96), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 40/147 (27%), Positives = 70/147 (47%), Gaps = 7/147 (4%)
Query: 58  GMDVNVAAWGPKSKGVTPLHLAAQGGHLEVMDVLLERGADIDARTKGACGWTPLHTAAKE 117
           G+ VNV +      G +PLH+AA  G  +++ +LL+ GA+  AR   A    PLH A ++
Sbjct: 76  GLGVNVTSQ----DGSSPLHVAALHGRADLIPLLLKHGANAGARN--ADQAVPLHLACQQ 129
Query: 118 RKKEAVRFLIENGAFLPDDINDSRFNPPLHYCPSLEWAYEEMMRFQRESFSAGETSYSSE 177
              + V+ L+++ A  P+  + S   P ++ C         ++     S +A     ++ 
Sbjct: 130 GHFQVVKCLLDSNAK-PNKKDLSGNTPLIYACSGGHHELVALLLQHGASINASNNKGNTA 188
Query: 178 KLNALSRLLVHMMPLLWLDLASDAVLS 204
              A+    V ++ LL L  AS  VL+
Sbjct: 189 LHEAVIEKHVFVVELLLLHGASVQVLN 215

>pdb|3SO8|A Chain A, Crystal Structure Of Ankra Length = 162

Iteration: 1
 Score = 52.0 bits (123), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 42/138 (30%), Positives = 65/138 (47%), Gaps = 7/138 (5%)
Query: 6   VHEQLGPFTLQRKASRKRFFRSVIDTDDRGWTPLHIGARKGDIKLVKQLLDEGMDVNVAA 65
           VH+      +   A+R      +  TD+ G+TPL   A  G I +V+ LL  G D  +  
Sbjct: 5   VHQLAAQGEMLYLATRIEQENVINHTDEEGFTPLMWAAAHGQIAVVEFLLQNGADPQLLG 64
Query: 66  WGPKSKGVTPLHLAAQGGHLEVMDVLLERGADIDARTKGACGWTPLHTAAKERKKEAVRF 125
            G +S     L LA   G+ +++ +LL+ G D++       G TPL  A      + V+ 
Sbjct: 65  KGRES----ALSLACSKGYTDIVKMLLDCGVDVNEYDWN--GGTPLLYAVHGNHVKCVKM 118
Query: 126 LIENGAFLPDDINDSRFN 143
           L+E+GA  P    DS +N
Sbjct: 119 LLESGAD-PTIETDSGYN 135

>pdb|2XEN|A Chain A, Structural Determinants For Improved Thermal Stability Of Designed Ankyrin Repeat Proteins With A Redesigned C- Capping Module Length = 91

Iteration: 1
 Score = 52.0 bits (123), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 29/61 (47%), Positives = 39/61 (63%), Gaps = 4/61 (6%)
Query: 43  ARKGDIKLVKQLLDEGMDVNVAAWGPKSKGVTPLHLAAQGGHLEVMDVLLERGADIDART 102
           AR G    V+ L+  G DVN         G TPLHLAA+ GHLE+++VLL+ GAD++A+ 
Sbjct: 10  ARAGQDDEVRILMANGADVNA----KDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAQD 65
Query: 103 K 103
           K
Sbjct: 66  K 66

>pdb|2XEN|A Chain A, Structural Determinants For Improved Thermal Stability Of Designed Ankyrin Repeat Proteins With A Redesigned C- Capping Module Length = 91

Iteration: 1
 Score = 40.4 bits (93), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 22/53 (41%), Positives = 34/53 (64%), Gaps = 2/53 (3%)
Query: 79  AAQGGHLEVMDVLLERGADIDARTKGACGWTPLHTAAKERKKEAVRFLIENGA 131
           AA+ G  + + +L+  GAD++A+ K   G+TPLH AA+E   E V  L++ GA
Sbjct: 9   AARAGQDDEVRILMANGADVNAKDKD--GYTPLHLAAREGHLEIVEVLLKAGA 59

>pdb|3D9H|A Chain A, Crystal Structure Of The Splice Variant Of Human Asb9 (Hasb9-2), An Ankyrin Repeat Protein Length = 285

Iteration: 1
 Score = 51.6 bits (122), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 35/113 (30%), Positives = 56/113 (49%), Gaps = 11/113 (9%)
Query: 36  WTPLHIGARKGDIKLVKQLLDEGMDVNVAAWGPKSKGVTPLHLAAQGGHLEVMDVLLERG 95
           W+P+H  A  G    ++ L+ +G  VN+      +  V+PLH A  GGHL  + +LL+ G
Sbjct: 60  WSPMHEAAIHGHQLSLRNLISQGWAVNIIT----ADHVSPLHEACLGGHLSCVKILLKHG 115
Query: 96  ADIDARTKGACGW-TPLHTAAKERKKEAVRFLIENGAFLPDDINDSRFNPPLH 147
           A ++  T     W TPL  A      + V  L+++GA +     +S    P+H
Sbjct: 116 AQVNGVTA---DWHTPLFNACVSGSWDCVNLLLQHGASVQP---ESDLASPIH 162

>pdb|3V2O|A Chain A, Crystal Structure Of The Peptide Bound Complex Of The Ankyrin Repeat Domains Of Human Ankra2 Length = 183

Iteration: 1
 Score = 51.6 bits (122), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 42/138 (30%), Positives = 65/138 (47%), Gaps = 7/138 (5%)
Query: 6   VHEQLGPFTLQRKASRKRFFRSVIDTDDRGWTPLHIGARKGDIKLVKQLLDEGMDVNVAA 65
           VH+      +   A+R      +  TD+ G+TPL   A  G I +V+ LL  G D  +  
Sbjct: 23  VHQLAAQGEMLYLATRIEQENVINHTDEEGFTPLMWAAAHGQIAVVEFLLQNGADPQLLG 82
Query: 66  WGPKSKGVTPLHLAAQGGHLEVMDVLLERGADIDARTKGACGWTPLHTAAKERKKEAVRF 125
            G +S     L LA   G+ +++ +LL+ G D++       G TPL  A      + V+ 
Sbjct: 83  KGRES----ALSLACSKGYTDIVKMLLDCGVDVNEYDWN--GGTPLLYAVHGNHVKCVKM 136
Query: 126 LIENGAFLPDDINDSRFN 143
           L+E+GA  P    DS +N
Sbjct: 137 LLESGAD-PTIETDSGYN 153

>pdb|3V2X|A Chain A, Crystal Structure Of The Peptide Bound Complex Of The Ankyrin Repeat Domains Of Human Ankra2 Length = 167

Iteration: 1
 Score = 51.6 bits (122), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 42/138 (30%), Positives = 65/138 (47%), Gaps = 7/138 (5%)
Query: 6   VHEQLGPFTLQRKASRKRFFRSVIDTDDRGWTPLHIGARKGDIKLVKQLLDEGMDVNVAA 65
           VH+      +   A+R      +  TD+ G+TPL   A  G I +V+ LL  G D  +  
Sbjct: 7   VHQLAAQGEMLYLATRIEQENVINHTDEEGFTPLMWAAAHGQIAVVEFLLQNGADPQLLG 66
Query: 66  WGPKSKGVTPLHLAAQGGHLEVMDVLLERGADIDARTKGACGWTPLHTAAKERKKEAVRF 125
            G +S     L LA   G+ +++ +LL+ G D++       G TPL  A      + V+ 
Sbjct: 67  KGRES----ALSLACSKGYTDIVKMLLDCGVDVNEYDWN--GGTPLLYAVHGNHVKCVKM 120
Query: 126 LIENGAFLPDDINDSRFN 143
           L+E+GA  P    DS +N
Sbjct: 121 LLESGAD-PTIETDSGYN 137

>pdb|3AAA|C Chain C, Crystal Structure Of Actin Capping Protein In Complex With V-1 Length = 123

Iteration: 1
 Score = 51.6 bits (122), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 35/88 (39%), Positives = 47/88 (53%), Gaps = 6/88 (6%)
Query: 44  RKGDIKLVKQLLDEGMDVNVAAWGPKSKGVTPLHLAAQGGHLEVMDVLLERGADIDARTK 103
           + GD+  VK  + +G DVN    G    G  PLH AA  G LE+++ LL +GADI+A  K
Sbjct: 16  KNGDLDEVKDYVAKGEDVNRTLEG----GRKPLHYAADCGQLEILEFLLLKGADINAPDK 71
Query: 104 GACGWTPLHTAAKERKKEAVRFLIENGA 131
                TPL +A  E     V+ L+  GA
Sbjct: 72  HH--ITPLLSAVYEGHVSCVKLLLSKGA 97

>pdb|1MYO|A Chain A, Solution Structure Of Myotrophin, Nmr, 44 Structures Length = 118

Iteration: 1
 Score = 51.6 bits (122), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 35/88 (39%), Positives = 47/88 (53%), Gaps = 6/88 (6%)
Query: 44  RKGDIKLVKQLLDEGMDVNVAAWGPKSKGVTPLHLAAQGGHLEVMDVLLERGADIDARTK 103
           + GD+  VK  + +G DVN    G    G  PLH AA  G LE+++ LL +GADI+A  K
Sbjct: 11  KNGDLDEVKDYVAKGEDVNRTLEG----GRKPLHYAADCGQLEILEFLLLKGADINAPDK 66
Query: 104 GACGWTPLHTAAKERKKEAVRFLIENGA 131
                TPL +A  E     V+ L+  GA
Sbjct: 67  HH--ITPLLSAVYEGHVSCVKLLLSKGA 92

>pdb|1S70|B Chain B, Complex Between Protein Ser/thr Phosphatase-1 (delta) And The Myosin Phosphatase Targeting Subunit 1 (mypt1) Length = 299

Iteration: 1
 Score = 46.6 bits (109), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 30/88 (34%), Positives = 46/88 (52%), Gaps = 6/88 (6%)
Query: 46  GDIKLVKQLLDEGMDVNVAAWGPKSKGVTPLHLAAQGGHLEVMDVLLERGADIDARTKGA 105
           GD + V +LL+ G D+N A       G+T LH A    +++++  L+E GA+I+      
Sbjct: 51  GDTEEVLRLLERGADINYA----NVDGLTALHQACIDDNVDMVKFLVENGANINQPDNE- 105
Query: 106 CGWTPLHTAAKERKKEAVRFLIENGAFL 133
            GW PLH AA     +   +LI  GA +
Sbjct: 106 -GWIPLHAAASCGYLDIAEYLISQGAHV 132

>pdb|2VGE|A Chain A, Crystal Structure Of The C-Terminal Region Of Human Iaspp Length = 229

Iteration: 1
 Score = 50.4 bits (119), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 35/117 (29%), Positives = 58/117 (49%), Gaps = 15/117 (12%)
Query: 17  RKASRKRFFRSVIDTDDRGWTPLHIGARKGDIKLVKQLLDEGMDVNVAAWGPKSKGVTPL 76
           RKA R R    V+  D          A  G++++V+Q + E  D +     P  +G+T L
Sbjct: 12  RKARRARLNPLVLLLD---------AALTGELEVVQQAVKEMNDPS----QPNEEGITAL 58
Query: 77  HLAAQGGHLEVMDVLLERGADIDARTKGACGWTPLHTAAKERKKEAVRFLIENGAFL 133
           H A  G +  ++D L+  GA+++  +  + GWTPLH AA          L+++GA +
Sbjct: 59  HNAICGANYSIVDFLITAGANVN--SPDSHGWTPLHCAASCNDTVICMALVQHGAAI 113

>pdb|3V30|A Chain A, Crystal Structure Of The Peptide Bound Complex Of The Ankyrin Repeat Domains Of Human Rfxank Length = 172

Iteration: 1
 Score = 50.4 bits (119), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 39/113 (34%), Positives = 61/113 (53%), Gaps = 7/113 (6%)
Query: 32  DDRGWTPLHIGARKGDIKLVKQLLDEGMDVNVAAWGPKSKGVTPLHLAAQGGHLEVMDVL 91
           D+RG+TPL   +  G+I+ V+ LL+ G D ++ A   +S     L LA+ GG+ +++ +L
Sbjct: 33  DERGFTPLIWASAFGEIETVRFLLEWGADPHILAKERESA----LSLASTGGYTDIVGLL 88
Query: 92  LERGADIDARTKGACGWTPLHTAAKERKKEAVRFLIENGAFLPDDINDSRFNP 144
           LER  D+D       G TPL  A +    + V  L+  GA L  +  DS + P
Sbjct: 89  LER--DVDINIYDWNGGTPLLYAVRGNHVKCVEALLARGADLTTEA-DSGYTP 138

>pdb|2ZGG|A Chain A, Asn-Hydroxylation Stabilises The Ankyrin Repeat Domain Fold Length = 92

Iteration: 1
 Score = 50.4 bits (119), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 29/61 (47%), Positives = 37/61 (60%), Gaps = 4/61 (6%)
Query: 43  ARKGDIKLVKQLLDEGMDVNVAAWGPKSKGVTPLHLAAQGGHLEVMDVLLERGADIDART 102
           AR G    V+ L+  G DV          G TPLHLAA+ GHLEV+ +LLE GAD++A+ 
Sbjct: 14  ARAGQDDEVRILMANGADV----AAKDKNGSTPLHLAARNGHLEVVKLLLEAGADVNAQD 69
Query: 103 K 103
           K
Sbjct: 70  K 70

>pdb|3EU9|A Chain A, The Ankyrin Repeat Domain Of Huntingtin Interacting Protein 14 Length = 240

Iteration: 1
 Score = 49.7 bits (117), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 29/79 (36%), Positives = 44/79 (55%), Gaps = 6/79 (7%)
Query: 37  TPLHIGARKGDIKLVKQLLDEGMDVNVAAWGPKSKGVTPLHLAAQGGHLEVMDVLLERGA 96
           TPLH   R+G + +V QL+  G D ++       +G + +HLAAQ GH  ++  L+ +G 
Sbjct: 78  TPLHWATRQGHLSMVVQLMKYGADPSLI----DGEGCSCIHLAAQFGHTSIVAYLIAKGQ 133
Query: 97  DIDARTKGACGWTPLHTAA 115
           D+D   +   G TPL  AA
Sbjct: 134 DVDMMDQN--GMTPLMWAA 150

>pdb|3UXG|A Chain A, Crystal Structure Of Rfxank Length = 172

Iteration: 1
 Score = 49.3 bits (116), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 39/113 (34%), Positives = 60/113 (53%), Gaps = 7/113 (6%)
Query: 32  DDRGWTPLHIGARKGDIKLVKQLLDEGMDVNVAAWGPKSKGVTPLHLAAQGGHLEVMDVL 91
           D+RG+TPL   +  G+I+ V+ LL+ G D ++ A   +S     L LA+ GG+ +++ +L
Sbjct: 33  DERGFTPLIWASAFGEIETVRFLLEWGADPHILAKERESA----LSLASTGGYTDIVGLL 88
Query: 92  LERGADIDARTKGACGWTPLHTAAKERKKEAVRFLIENGAFLPDDINDSRFNP 144
           LER  D+D       G TPL  A      + V  L+  GA L  +  DS + P
Sbjct: 89  LER--DVDINIYDWNGGTPLLYAVHGNHVKCVEALLARGADLTTEA-DSGYTP 138

>pdb|2ZGD|A Chain A, Asn-Hydroxylation Stabilises The Ankyrin Repeat Domain Fold Length = 110

Iteration: 1
 Score = 48.5 bits (114), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 29/61 (47%), Positives = 36/61 (59%), Gaps = 4/61 (6%)
Query: 43  ARKGDIKLVKQLLDEGMDVNVAAWGPKSKGVTPLHLAAQGGHLEVMDVLLERGADIDART 102
           AR G    V+ L+  G DV          G TPLHLAA+ GHLEV+ +LLE GAD+ A+ 
Sbjct: 32  ARAGQDDEVRILMANGADV----AAKDKNGSTPLHLAARNGHLEVVKLLLEAGADVXAQD 87
Query: 103 K 103
           K
Sbjct: 88  K 88

>pdb|1NFI|E Chain E, I-Kappa-B-AlphaNF-Kappa-B Complex Length = 213

Iteration: 1
 Score = 48.1 bits (113), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 34/113 (30%), Positives = 57/113 (50%), Gaps = 7/113 (6%)
Query: 32  DDRGWTPLHIGARKGDIKLVKQLLDEGMDVNVAAW--GPKSKGVTPLHLAAQGGHLEVMD 89
           D RG TPLH+   +G +  V  L       ++ +        G T LHLA+  G+L +++
Sbjct: 72  DFRGNTPLHLACEQGCLASVGVLTQSCTTPHLHSILKATNYNGHTCLHLASIHGYLGIVE 131
Query: 90  VLLERGADIDARTKGACGWTPLHTAAKERKKEAVRFLIENGAFLPDDINDSRF 142
           +L+  GAD++A+ +   G T LH A   +  + V  L++ GA    D+N   +
Sbjct: 132 LLVSLGADVNAQ-EPCNGRTALHLAVDLQNPDLVSLLLKCGA----DVNRVTY 179

>pdb|1IKN|D Chain D, IkappabalphaNF-Kappab Complex Length = 236

Iteration: 1
 Score = 41.2 bits (95), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 32/117 (27%), Positives = 60/117 (51%), Gaps = 9/117 (7%)
Query: 31  TDDRGWTPLHIGARKGDIKLVKQLLDEGMDVNVAAWGPKSKGVTPLHLAAQGGHLEVMDV 90
           T+  G T LH+ +  G + +V+ L+  G DVN  A  P   G T LHLA    + +++ +
Sbjct: 113 TNYNGHTCLHLASIHGYLGIVELLVSLGADVN--AQEP-CNGRTALHLAVDLQNPDLVSL 169
Query: 91  LLERGADIDARTKGACGWTPLHTA----AKERKKEAVRFLIENGAFLPDDINDSRFN 143
           LL+ GAD++  T    G++P        +   +++  +  +EN   LP+  ++  ++
Sbjct: 170 LLKCGADVNRVTYQ--GYSPYQLTWGRPSTRIQQQLGQLTLENLQMLPESEDEESYD 224

>pdb|4G8K|A Chain A, Intact Sensor Domain Of Human Rnase L In The Inactive Signaling State Length = 337

Iteration: 1
 Score = 47.8 bits (112), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 34/100 (34%), Positives = 51/100 (51%), Gaps = 12/100 (12%)
Query: 35  GWTPLHIGARKGDIKLVKQLLDEGMDVNVAAWGPKSKGVTPLHLAAQGGHLEVMDVLLER 94
           GWTPLH   +     +V+ LL  G D  +     K  G TP  LAA  G ++++ + L +
Sbjct: 59  GWTPLHNAVQMSREDIVELLLRHGADPVL----RKKNGATPFILAAIAGSVKLLKLFLSK 114
Query: 95  GADIDARTKGAC---GWTPLHTAAKERKKEAVRFLIENGA 131
           GAD++      C   G+T    AA   K +A++FL + GA
Sbjct: 115 GADVN-----ECDFYGFTAFMEAAVYGKVKALKFLYKRGA 149

>pdb|1WDY|A Chain A, Crystal Structure Of Ribonuclease Length = 285

Iteration: 1
 Score = 47.4 bits (111), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 34/100 (34%), Positives = 51/100 (51%), Gaps = 12/100 (12%)
Query: 35  GWTPLHIGARKGDIKLVKQLLDEGMDVNVAAWGPKSKGVTPLHLAAQGGHLEVMDVLLER 94
           GWTPLH   +     +V+ LL  G D  +     K  G TP  LAA  G ++++ + L +
Sbjct: 39  GWTPLHNAVQMSREDIVELLLRHGADPVL----RKKNGATPFLLAAIAGSVKLLKLFLSK 94
Query: 95  GADIDARTKGAC---GWTPLHTAAKERKKEAVRFLIENGA 131
           GAD++      C   G+T    AA   K +A++FL + GA
Sbjct: 95  GADVN-----ECDFYGFTAFMEAAVYGKVKALKFLYKRGA 129

>pdb|1BLX|B Chain B, P19ink4dCDK6 COMPLEX Length = 166

Iteration: 1
 Score = 46.6 bits (109), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 32/103 (31%), Positives = 51/103 (49%), Gaps = 8/103 (7%)
Query: 32  DDRGWTPLHIGARKGDIKLVKQLLDEGMDVNVAAWGPKSKGVTPLHLAAQGGHLEVMDVL 91
           D  G +P+H  AR G +  +K L++ G DVN       S G  P+HLA + GH  V+  L
Sbjct: 71  DASGTSPVHDAARTGFLDTLKVLVEHGADVNAL----DSTGSLPIHLAIREGHSSVVSFL 126
Query: 92  LERGADIDARTKGACGWTPLHTAAKERKKEAVRFLIENGAFLP 134
                + D   + A G TPL   A++R  + +  +++    +P
Sbjct: 127 ---APESDLHHRDASGLTPLEL-ARQRGAQNLMDILQGHMMIP 165

>pdb|1AP7|A Chain A, P19-Ink4d From Mouse, Nmr, 20 Structures Length = 168

Iteration: 1
 Score = 46.6 bits (109), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 32/103 (31%), Positives = 51/103 (49%), Gaps = 8/103 (7%)
Query: 32  DDRGWTPLHIGARKGDIKLVKQLLDEGMDVNVAAWGPKSKGVTPLHLAAQGGHLEVMDVL 91
           D  G +P+H  AR G +  +K L++ G DVN       S G  P+HLA + GH  V+  L
Sbjct: 73  DASGTSPVHDAARTGFLDTLKVLVEHGADVNAL----DSTGSLPIHLAIREGHSSVVSFL 128
Query: 92  LERGADIDARTKGACGWTPLHTAAKERKKEAVRFLIENGAFLP 134
                + D   + A G TPL   A++R  + +  +++    +P
Sbjct: 129 ---APESDLHHRDASGLTPLEL-ARQRGAQNLMDILQGHMMIP 167

>pdb|2RFM|A Chain A, Structure Of A Thermophilic Ankyrin Repeat Protein Length = 192

Iteration: 1
 Score = 45.4 bits (106), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 35/107 (32%), Positives = 54/107 (50%), Gaps = 6/107 (5%)
Query: 25  FRSVIDTDDRGWTPLHIGARKGDIKLVKQLLDEGMDVNVAAWGPKSKGVTPLHLAAQGGH 84
           F  + D D  G T L    +   + + ++LL +G +VN   +     G TPL  +   G+
Sbjct: 58  FDKLEDKDIEGSTALIWAVKNNRLGIAEKLLSKGSNVNTKDFS----GKTPLMWSIIFGY 113
Query: 85  LEVMDVLLERGADIDARTKGACGWTPLHTAAKERKKEAVRFLIENGA 131
            E+   LLE GA+++ R     G TPL  A+K  + E V+ L+E GA
Sbjct: 114 SEMSYFLLEHGANVNDRN--LEGETPLIVASKYGRSEIVKKLLELGA 158

>pdb|2RFA|A Chain A, Crystal Structure Of The Mouse Trpv6 Ankyrin Repeat Domain Length = 232

Iteration: 1
 Score = 45.1 bits (105), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 41/130 (31%), Positives = 60/130 (46%), Gaps = 24/130 (18%)
Query: 35  GWTPLHIGARKGDIKLVKQLLDEGMDVNVAAWGPKS----KGVTPLHLAAQGGHLEVMDV 90
           G T LHI A   +++    L++   ++    + P +    +G T LH+A    ++ ++  
Sbjct: 37  GETALHIAALYDNLEAAMVLMEAAPEL---VFEPMTSELYEGQTALHIAVINQNVNLVRA 93
Query: 91  LLERGADIDARTKGAC-----------GWTPLHTAAKERKKEAVRFLIENGAFLPDDI-- 137
           LL RGA + AR  G+            G  PL  AA    +E VR LIE+GA    DI  
Sbjct: 94  LLARGASVSARATGSVFHYRPHNLIYYGEHPLSFAACVGSEEIVRLLIEHGA----DIRA 149
Query: 138 NDSRFNPPLH 147
            DS  N  LH
Sbjct: 150 QDSLGNTVLH 159

>pdb|3HRA|A Chain A, Crystal Structure Of Ef0377 An Ankyrin Repeat Protein Length = 201

Iteration: 1
 Score = 45.1 bits (105), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 43/140 (30%), Positives = 62/140 (44%), Gaps = 38/140 (27%)
Query: 28  VIDTDDRGWTPLHIGARKGDIKLVKQLLDEGMDVNV------------AAWGPKS----- 70
           V + D  G TPL+I     DI++ K L+D G D+N+             A G        
Sbjct: 32  VDEVDTEGNTPLNIAVHNNDIEIAKALIDRGADINLQNSISDSPYLYAGAQGRTEILAYM 91
Query: 71  -KGVTP------------LHLAAQGGHLEVMDVLLERG-ADIDARTKGACGWTPLHTAAK 116
            K  TP            L  AA+ GH++ + +LLE G  DID +     G+T L  A  
Sbjct: 92  LKHATPDLNKHNRYGGNALIPAAEKGHIDNVKLLLEDGREDIDFQND--FGYTALIEAVG 149
Query: 117 ERK-----KEAVRFLIENGA 131
            R+     ++ V+ L+ENGA
Sbjct: 150 LREGNQLYQDIVKLLMENGA 169

>pdb|1K1B|A Chain A, Crystal Structure Of The Ankyrin Repeat Domain Of Bcl-3: A Unique Member Of The Ikappab Protein Family Length = 241

Iteration: 1
 Score = 45.1 bits (105), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 31/100 (31%), Positives = 45/100 (45%), Gaps = 1/100 (1%)
Query: 32  DDRGWTPLHIGARKGDIKLVKQLLDEGMDVNVAAWGPKSKGVTPLHLAAQGGHLEVMDVL 91
           D  G T  H+         ++ LLD      +        G+T LH+A      E + +L
Sbjct: 76  DRHGQTAAHLACEHRSPTCLRALLDSAAPGTLDLEARNYDGLTALHVAVNTECQETVQLL 135
Query: 92  LERGADIDARTKGACGWTPLHTAAKERKKEAVRFLIENGA 131
           LERGADIDA      G +PL  A +      V+ L+++GA
Sbjct: 136 LERGADIDA-VDIKSGRSPLIHAVENNSLSMVQLLLQHGA 174

>pdb|2NYJ|A Chain A, Crystal Structure Of The Ankyrin Repeat Domain Of Trpv1 Length = 273

Iteration: 1
 Score = 44.7 bits (104), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 52/164 (31%), Positives = 74/164 (45%), Gaps = 28/164 (17%)
Query: 8   EQLGPFTLQRKASRKRFFRSVIDTDDRGWTPL---HIGARKGDIKLVKQLLDEGMD---- 60
           E L PF LQR  S+KR   S     + G T L    +    G    +  LLD        
Sbjct: 30  ESLLPF-LQR--SKKRLTDSEFKDPETGKTCLLKAXLNLHNGQNDTIALLLDVARKTDSL 86
Query: 61  ---VNVAAWGPKSKGVTPLHLAAQGGHLEVMDVLLERGADIDA--------RTKGACGW- 108
              VN +      KG T LH+A +  +  ++ +L+E GAD+ A        +TKG  G+ 
Sbjct: 87  KQFVNASYTDSYYKGQTALHIAIERRNXTLVTLLVENGADVQAAANGDFFKKTKGRPGFY 146
Query: 109 ---TPLHTAAKERKKEAVRFLIENGAFLPDDIN--DSRFNPPLH 147
               PL  AA   +   V+FL++N ++ P DI+  DS  N  LH
Sbjct: 147 FGELPLSLAACTNQLAIVKFLLQN-SWQPADISARDSVGNTVLH 189

>pdb|1MX4|A Chain A, Structure Of P18ink4c (F82q) Length = 168

Iteration: 1
 Score = 43.9 bits (102), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 37/107 (34%), Positives = 56/107 (52%), Gaps = 14/107 (13%)
Query: 30  DTDDR-GWTPLHIGARKGDIKLVKQLLDEGMDVNVAAWGPKSKGVTPLHLAAQGGHLEVM 88
           D  DR G+  +H  AR G +  ++ LL+   DVN+      ++G  PLHLAA+ GHL V+
Sbjct: 64  DLKDRTGFAVIHDAARAGQLDTLQTLLEFQADVNI----EDNEGNLPLHLAAKEGHLRVV 119
Query: 89  DVLLERGA-DIDART-KG--ACGWTPLHTAAKERKKEAVRFLIENGA 131
           + L++  A ++  R  KG  AC    L+      + E V  +  NGA
Sbjct: 120 EFLVKHTASNVGHRNHKGDTACDLARLYG-----RNEVVSLMQANGA 161

>pdb|1MX6|A Chain A, Structure Of P18ink4c (F92n) Length = 168

Iteration: 1
 Score = 43.9 bits (102), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 37/107 (34%), Positives = 56/107 (52%), Gaps = 14/107 (13%)
Query: 30  DTDDR-GWTPLHIGARKGDIKLVKQLLDEGMDVNVAAWGPKSKGVTPLHLAAQGGHLEVM 88
           D  DR G+  +H  AR G +  ++ LL+   DVN+      ++G  PLHLAA+ GHL V+
Sbjct: 64  DLKDRTGFAVIHDAARAGFLDTLQTLLENQADVNI----EDNEGNLPLHLAAKEGHLRVV 119
Query: 89  DVLLERGA-DIDART-KG--ACGWTPLHTAAKERKKEAVRFLIENGA 131
           + L++  A ++  R  KG  AC    L+      + E V  +  NGA
Sbjct: 120 EFLVKHTASNVGHRNHKGDTACDLARLYG-----RNEVVSLMQANGA 161

>pdb|2F8Y|A Chain A, Crystal Structure Of Human Notch1 Ankyrin Repeats To 1.55a Resolution. Length = 223

Iteration: 1
 Score = 43.9 bits (102), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 32/87 (36%), Positives = 41/87 (47%), Gaps = 7/87 (8%)
Query: 31  TDDRGWTPLHIGARKGDIKLVKQLLDEGMDVNVAAWGPKSKGVTPLHLAAQGGHLEVMDV 90
           TD  G T LH+ AR       K+LL+   D N+      + G TPLH A       V  +
Sbjct: 21  TDRTGETALHLAARYSRSDAAKRLLEASADANI----QDNMGRTPLHAAVSADAQGVFQI 76
Query: 91  LL-ERGADIDARTKGACGWTPLHTAAK 116
           L+  R  D+DAR     G TPL  AA+
Sbjct: 77  LIRNRATDLDARMHD--GTTPLILAAR 101

>pdb|1YYH|A Chain A, Crystal Structure Of The Human Notch 1 Ankyrin Domain Length = 253

Iteration: 1
 Score = 43.5 bits (101), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 32/87 (36%), Positives = 41/87 (47%), Gaps = 7/87 (8%)
Query: 31  TDDRGWTPLHIGARKGDIKLVKQLLDEGMDVNVAAWGPKSKGVTPLHLAAQGGHLEVMDV 90
           TD  G T LH+ AR       K+LL+   D N+      + G TPLH A       V  +
Sbjct: 53  TDRTGETALHLAARYSRSDAAKRLLEASADANI----QDNMGRTPLHAAVSADAQGVFQI 108
Query: 91  LL-ERGADIDARTKGACGWTPLHTAAK 116
           L+  R  D+DAR     G TPL  AA+
Sbjct: 109 LIRNRATDLDARMHD--GTTPLILAAR 133

>pdb|2F8X|K Chain K, Crystal Structure Of Activated Notch, Csl And Maml On Hes-1 Promoter Dna Sequence Length = 256

Iteration: 1
 Score = 43.1 bits (100), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 32/87 (36%), Positives = 41/87 (47%), Gaps = 7/87 (8%)
Query: 31  TDDRGWTPLHIGARKGDIKLVKQLLDEGMDVNVAAWGPKSKGVTPLHLAAQGGHLEVMDV 90
           TD  G T LH+ AR       K+LL+   D N+      + G TPLH A       V  +
Sbjct: 54  TDRTGETALHLAARYSRSDAAKRLLEASADANI----QDNMGRTPLHAAVSADAQGVFQI 109
Query: 91  LL-ERGADIDARTKGACGWTPLHTAAK 116
           L+  R  D+DAR     G TPL  AA+
Sbjct: 110 LIRNRATDLDARMHD--GTTPLILAAR 134

>pdb|1OT8|A Chain A, Structure Of The Ankyrin Domain Of The Drosophila Notch Receptor Length = 239

Iteration: 1
 Score = 43.1 bits (100), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 33/95 (34%), Positives = 49/95 (51%), Gaps = 6/95 (6%)
Query: 35  GWTPLHIGARKGDIKLVKQLLDEGMDVNVAAWGPKSKGVTPLHLAAQGGHLEVMDVLLER 94
           G TPL + AR     +V+ L+    D+N A     + G T LH AA   + E +++LL  
Sbjct: 118 GTTPLILAARLAIEGMVEDLITADADINAA----DNSGKTALHWAAAVNNTEAVNILLMH 173
Query: 95  GADIDARTKGACGWTPLHTAAKERKKEAVRFLIEN 129
            A+ DA+       TPL  AA+E   EA + L++N
Sbjct: 174 HANRDAQDD--KDETPLFLAAREGSYEASKALLDN 206

>pdb|1IHB|A Chain A, Crystal Structure Of P18-Ink4c(Ink6) Length = 162

Iteration: 1
 Score = 42.7 bits (99), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 37/107 (34%), Positives = 56/107 (52%), Gaps = 14/107 (13%)
Query: 30  DTDDR-GWTPLHIGARKGDIKLVKQLLDEGMDVNVAAWGPKSKGVTPLHLAAQGGHLEVM 88
           D  DR G+  +H  AR G +  ++ LL+   DVN+      ++G  PLHLAA+ GHL V+
Sbjct: 64  DLKDRTGFAVIHDAARAGFLDTLQTLLEFQADVNI----EDNEGNLPLHLAAKEGHLRVV 119
Query: 89  DVLLERGA-DIDART-KG--ACGWTPLHTAAKERKKEAVRFLIENGA 131
           + L++  A ++  R  KG  AC    L+      + E V  +  NGA
Sbjct: 120 EFLVKHTASNVGHRNHKGDTACDLARLYG-----RNEVVSLMQANGA 161

>pdb|1BU9|A Chain A, Solution Structure Of P18-Ink4c, 21 Structures Length = 168

Iteration: 1
 Score = 42.7 bits (99), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 37/107 (34%), Positives = 56/107 (52%), Gaps = 14/107 (13%)
Query: 30  DTDDR-GWTPLHIGARKGDIKLVKQLLDEGMDVNVAAWGPKSKGVTPLHLAAQGGHLEVM 88
           D  DR G+  +H  AR G +  ++ LL+   DVN+      ++G  PLHLAA+ GHL V+
Sbjct: 64  DLKDRTGFAVIHDAARAGFLDTLQTLLEFQADVNI----EDNEGNLPLHLAAKEGHLRVV 119
Query: 89  DVLLERGA-DIDART-KG--ACGWTPLHTAAKERKKEAVRFLIENGA 131
           + L++  A ++  R  KG  AC    L+      + E V  +  NGA
Sbjct: 120 EFLVKHTASNVGHRNHKGDTACDLARLYG-----RNEVVSLMQANGA 161

>pdb|2FO1|E Chain E, Crystal Structure Of The Csl-Notch-Mastermind Ternary Complex Bound To Dna Length = 373

Iteration: 1
 Score = 42.0 bits (97), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 35/110 (31%), Positives = 56/110 (50%), Gaps = 10/110 (9%)
Query: 32  DDRGWTPLHIGAR---KGDIKLVKQLLDEGMDVNVAAWGPKS----KGVTPLHLAAQGGH 84
           D  G T L I A    +  +   K L+++G  V+      K     KG T LH AAQ  +
Sbjct: 232 DRNGXTALXIVAHNEGRDQVASAKLLVEKGAKVDYDGAARKDSEKYKGRTALHYAAQVSN 291
Query: 85  LEVMDVLL-ERGADIDARTKGACGWTPLHTAAKERKKEAVRFLIENGAFL 133
             ++  L+ E+G++ D + +   G TP+  AA+E + E V +LI+ GA +
Sbjct: 292 XPIVKYLVGEKGSNKDKQDED--GKTPIXLAAQEGRIEVVXYLIQQGASV 339

>pdb|2QC9|A Chain A, Mouse Notch 1 Ankyrin Repeat Intracellular Domain Length = 210

Iteration: 1
 Score = 42.0 bits (97), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 32/87 (36%), Positives = 40/87 (45%), Gaps = 7/87 (8%)
Query: 31  TDDRGWTPLHIGARKGDIKLVKQLLDEGMDVNVAAWGPKSKGVTPLHLAAQGGHLEVMDV 90
           TD  G T LH+ AR       K+LL+   D  +      + G TPLH A       V  +
Sbjct: 18  TDRTGETALHLAARYSRSDAAKRLLEASADAXI----QDNMGRTPLHAAVSADAQGVFQI 73
Query: 91  LL-ERGADIDARTKGACGWTPLHTAAK 116
           LL  R  D+DAR     G TPL  AA+
Sbjct: 74  LLRNRATDLDARMHD--GTTPLILAAR 98

>pdb|1MX2|A Chain A, Structure Of F71n Mutant Of P18ink4c Length = 168

Iteration: 1
 Score = 40.8 bits (94), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 37/107 (34%), Positives = 55/107 (51%), Gaps = 14/107 (13%)
Query: 30  DTDDR-GWTPLHIGARKGDIKLVKQLLDEGMDVNVAAWGPKSKGVTPLHLAAQGGHLEVM 88
           D  DR G   +H  AR G +  ++ LL+   DVN+      ++G  PLHLAA+ GHL V+
Sbjct: 64  DLKDRTGNAVIHDAARAGFLDTLQTLLEFQADVNI----EDNEGNLPLHLAAKEGHLRVV 119
Query: 89  DVLLERGA-DIDART-KG--ACGWTPLHTAAKERKKEAVRFLIENGA 131
           + L++  A ++  R  KG  AC    L+      + E V  +  NGA
Sbjct: 120 EFLVKHTASNVGHRNHKGDTACDLARLYG-----RNEVVSLMQANGA 161

>pdb|2HE0|A Chain A, Crystal Structure Of A Human Notch1 Ankyrin Domain Mutant Length = 253

Iteration: 1
 Score = 40.8 bits (94), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 31/87 (35%), Positives = 40/87 (45%), Gaps = 7/87 (8%)
Query: 31  TDDRGWTPLHIGARKGDIKLVKQLLDEGMDVNVAAWGPKSKGVTPLHLAAQGGHLEVMDV 90
           TD  G T LH+ A        K+LL+   D N+      + G TPLH A       V  +
Sbjct: 53  TDRTGATALHLAAAYSRSDAAKRLLEASADANI----QDNMGRTPLHAAVSADAQGVFQI 108
Query: 91  LL-ERGADIDARTKGACGWTPLHTAAK 116
           L+  R  D+DAR     G TPL  AA+
Sbjct: 109 LIRNRATDLDARMHD--GTTPLILAAR 133

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	210
3c5r_A	137	BARD-1, BRCA1-associated ring domain protein 1; an	7e-39
3c5r_A	137	BARD-1, BRCA1-associated ring domain protein 1; an	7e-34
3c5r_A	137	BARD-1, BRCA1-associated ring domain protein 1; an	3e-16
2l6b_A	115	NR1C; ankyrin, consensus, repeat protein, ising mo	4e-38
3v30_A	172	DNA-binding protein rfxank; structural genomics co	1e-37
3v30_A	172	DNA-binding protein rfxank; structural genomics co	3e-35
3v30_A	172	DNA-binding protein rfxank; structural genomics co	2e-33
3v30_A	172	DNA-binding protein rfxank; structural genomics co	1e-24
2xai_A	261	ASB-9, ankyrin repeat and SOCS box protein 9; tran	1e-36
2xai_A	261	ASB-9, ankyrin repeat and SOCS box protein 9; tran	8e-36
2xai_A	261	ASB-9, ankyrin repeat and SOCS box protein 9; tran	2e-34
2xai_A	261	ASB-9, ankyrin repeat and SOCS box protein 9; tran	7e-34
2xai_A	261	ASB-9, ankyrin repeat and SOCS box protein 9; tran	5e-32
2xai_A	261	ASB-9, ankyrin repeat and SOCS box protein 9; tran	4e-31
3aaa_C	123	Myotrophin, protein V-1; actin capping protein, ba	1e-36
3aaa_C	123	Myotrophin, protein V-1; actin capping protein, ba	4e-28
3aaa_C	123	Myotrophin, protein V-1; actin capping protein, ba	2e-23
3d9h_A	285	CDNA FLJ77766, highly similar to HOMO sapiens anky	1e-36
3d9h_A	285	CDNA FLJ77766, highly similar to HOMO sapiens anky	1e-35
3d9h_A	285	CDNA FLJ77766, highly similar to HOMO sapiens anky	9e-34
3d9h_A	285	CDNA FLJ77766, highly similar to HOMO sapiens anky	1e-30
3d9h_A	285	CDNA FLJ77766, highly similar to HOMO sapiens anky	9e-25
3d9h_A	285	CDNA FLJ77766, highly similar to HOMO sapiens anky	3e-18
3d9h_A	285	CDNA FLJ77766, highly similar to HOMO sapiens anky	6e-17
3f6q_A	179	Integrin-linked protein kinase; ILK, integrin-link	2e-36
3f6q_A	179	Integrin-linked protein kinase; ILK, integrin-link	7e-35
3f6q_A	179	Integrin-linked protein kinase; ILK, integrin-link	1e-33
3f6q_A	179	Integrin-linked protein kinase; ILK, integrin-link	4e-20
3f6q_A	179	Integrin-linked protein kinase; ILK, integrin-link	2e-07
3v31_A	167	Ankyrin repeat family A protein 2; structural geno	2e-36
3v31_A	167	Ankyrin repeat family A protein 2; structural geno	5e-36
3v31_A	167	Ankyrin repeat family A protein 2; structural geno	6e-35
3v31_A	167	Ankyrin repeat family A protein 2; structural geno	1e-22
1ycs_B	239	53BP2, P53BP2; ankyrin repeats, SH3, tumor suppres	2e-36
1ycs_B	239	53BP2, P53BP2; ankyrin repeats, SH3, tumor suppres	3e-36
1ycs_B	239	53BP2, P53BP2; ankyrin repeats, SH3, tumor suppres	1e-23
1ycs_B	239	53BP2, P53BP2; ankyrin repeats, SH3, tumor suppres	1e-18
1ycs_B	239	53BP2, P53BP2; ankyrin repeats, SH3, tumor suppres	9e-11
1n0r_A	126	4ANK, 4 ankyrin repeats; structural protein; 1.50A	4e-36
1n0r_A	126	4ANK, 4 ankyrin repeats; structural protein; 1.50A	7e-35
1oy3_D	282	Transcription factor inhibitor I-kappa-B-beta; pro	6e-36
1oy3_D	282	Transcription factor inhibitor I-kappa-B-beta; pro	1e-31
1oy3_D	282	Transcription factor inhibitor I-kappa-B-beta; pro	1e-29
1oy3_D	282	Transcription factor inhibitor I-kappa-B-beta; pro	2e-26
1oy3_D	282	Transcription factor inhibitor I-kappa-B-beta; pro	4e-26
1n0q_A	93	3ANK, 3 ankyrin repeats; structural protein; 1.26A	7e-36
1n0q_A	93	3ANK, 3 ankyrin repeats; structural protein; 1.26A	1e-24
1awc_B	153	Protein (GA binding protein beta 1); complex (tran	8e-36
1awc_B	153	Protein (GA binding protein beta 1); complex (tran	2e-35
1awc_B	153	Protein (GA binding protein beta 1); complex (tran	2e-28
1k1a_A	241	B-cell lymphoma 3-encoded protein; BCL-3, NF-kappa	1e-35
1k1a_A	241	B-cell lymphoma 3-encoded protein; BCL-3, NF-kappa	9e-35
1k1a_A	241	B-cell lymphoma 3-encoded protein; BCL-3, NF-kappa	2e-31
2vge_A	229	RELA-associated inhibitor; iaspp, nucleus, apoptos	2e-35
2vge_A	229	RELA-associated inhibitor; iaspp, nucleus, apoptos	2e-28
2vge_A	229	RELA-associated inhibitor; iaspp, nucleus, apoptos	3e-24
2vge_A	229	RELA-associated inhibitor; iaspp, nucleus, apoptos	2e-17
2vge_A	229	RELA-associated inhibitor; iaspp, nucleus, apoptos	6e-09
2vge_A	229	RELA-associated inhibitor; iaspp, nucleus, apoptos	2e-06
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	2e-35
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	2e-35
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	6e-35
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	2e-34
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	2e-34
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	4e-34
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	5e-29
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	6e-20
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	2e-10
2f8y_A	223	Notch homolog 1, translocation-associated (drosoph	4e-35
2f8y_A	223	Notch homolog 1, translocation-associated (drosoph	8e-33
2f8y_A	223	Notch homolog 1, translocation-associated (drosoph	3e-32
2f8y_A	223	Notch homolog 1, translocation-associated (drosoph	4e-25
3eu9_A	240	Huntingtin-interacting protein 14; epigenetics, an	4e-35
3eu9_A	240	Huntingtin-interacting protein 14; epigenetics, an	7e-35
3eu9_A	240	Huntingtin-interacting protein 14; epigenetics, an	6e-32
3eu9_A	240	Huntingtin-interacting protein 14; epigenetics, an	2e-16
3b7b_A	237	Euchromatic histone-lysine N-methyltransferase 1;	5e-35
3b7b_A	237	Euchromatic histone-lysine N-methyltransferase 1;	2e-33
3b7b_A	237	Euchromatic histone-lysine N-methyltransferase 1;	1e-30
3b7b_A	237	Euchromatic histone-lysine N-methyltransferase 1;	3e-17
3b7b_A	237	Euchromatic histone-lysine N-methyltransferase 1;	2e-07
2y1l_E	169	Darpin-8.4; hydrolase-inhibitor complex, DEVD darp	6e-35
2y1l_E	169	Darpin-8.4; hydrolase-inhibitor complex, DEVD darp	7e-35
2y1l_E	169	Darpin-8.4; hydrolase-inhibitor complex, DEVD darp	5e-31
2y1l_E	169	Darpin-8.4; hydrolase-inhibitor complex, DEVD darp	6e-10
1wdy_A	285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	7e-35
1wdy_A	285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	1e-33
1wdy_A	285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	4e-31
1wdy_A	285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	2e-29
1wdy_A	285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	4e-28
1wdy_A	285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	2e-21
1wdy_A	285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	2e-18
1wdy_A	285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	5e-05
3twr_A	165	Tankyrase-2; ankyrin repeat, protein-protein inter	1e-34
3twr_A	165	Tankyrase-2; ankyrin repeat, protein-protein inter	3e-30
3kea_A	285	K1L; tropism, ANK repeat, viral protein; 2.30A {Va	1e-34
3kea_A	285	K1L; tropism, ANK repeat, viral protein; 2.30A {Va	7e-33
3kea_A	285	K1L; tropism, ANK repeat, viral protein; 2.30A {Va	1e-31
3kea_A	285	K1L; tropism, ANK repeat, viral protein; 2.30A {Va	5e-30
3kea_A	285	K1L; tropism, ANK repeat, viral protein; 2.30A {Va	1e-27
3kea_A	285	K1L; tropism, ANK repeat, viral protein; 2.30A {Va	1e-27
1ikn_D	236	Protein (I-kappa-B-alpha), protein (NF-kappa-B P50	2e-34
1ikn_D	236	Protein (I-kappa-B-alpha), protein (NF-kappa-B P50	8e-33
1ikn_D	236	Protein (I-kappa-B-alpha), protein (NF-kappa-B P50	2e-31
1ikn_D	236	Protein (I-kappa-B-alpha), protein (NF-kappa-B P50	2e-18
2dzn_A	228	Probable 26S proteasome regulatory subunit P28; an	3e-34
2dzn_A	228	Probable 26S proteasome regulatory subunit P28; an	2e-33
2dzn_A	228	Probable 26S proteasome regulatory subunit P28; an	2e-31
2dzn_A	228	Probable 26S proteasome regulatory subunit P28; an	9e-30
2dzn_A	228	Probable 26S proteasome regulatory subunit P28; an	6e-26
1d9s_A	136	Cyclin-dependent kinase 4 inhibitor B; helix-turn-	4e-34
1d9s_A	136	Cyclin-dependent kinase 4 inhibitor B; helix-turn-	9e-33
1d9s_A	136	Cyclin-dependent kinase 4 inhibitor B; helix-turn-	3e-23
1d9s_A	136	Cyclin-dependent kinase 4 inhibitor B; helix-turn-	2e-18
1ihb_A	162	P18-INK4C(INK6), cyclin-dependent kinase 6 inhibit	4e-34
1ihb_A	162	P18-INK4C(INK6), cyclin-dependent kinase 6 inhibit	2e-33
1ihb_A	162	P18-INK4C(INK6), cyclin-dependent kinase 6 inhibit	4e-32
3deo_A	183	Signal recognition particle 43 kDa protein; chloro	5e-34
3deo_A	183	Signal recognition particle 43 kDa protein; chloro	4e-33
3deo_A	183	Signal recognition particle 43 kDa protein; chloro	8e-33
3deo_A	183	Signal recognition particle 43 kDa protein; chloro	3e-17
3ui2_A	244	Signal recognition particle 43 kDa protein, chlor;	1e-33
3ui2_A	244	Signal recognition particle 43 kDa protein, chlor;	2e-32
3ui2_A	244	Signal recognition particle 43 kDa protein, chlor;	2e-31
3ui2_A	244	Signal recognition particle 43 kDa protein, chlor;	2e-25
3ui2_A	244	Signal recognition particle 43 kDa protein, chlor;	9e-19
2rfa_A	232	Transient receptor potential cation channel subfa	2e-33
2rfa_A	232	Transient receptor potential cation channel subfa	1e-30
2rfa_A	232	Transient receptor potential cation channel subfa	2e-28
2rfa_A	232	Transient receptor potential cation channel subfa	1e-27
2rfa_A	232	Transient receptor potential cation channel subfa	3e-19
2rfa_A	232	Transient receptor potential cation channel subfa	9e-18
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	3e-33
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	8e-33
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	2e-30
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	5e-30
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	2e-29
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	9e-27
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	6e-08
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	2e-05
1s70_B	299	130 kDa myosin-binding subunit of smooth muscle my	3e-33
1s70_B	299	130 kDa myosin-binding subunit of smooth muscle my	8e-31
1s70_B	299	130 kDa myosin-binding subunit of smooth muscle my	8e-30
1s70_B	299	130 kDa myosin-binding subunit of smooth muscle my	2e-29
1s70_B	299	130 kDa myosin-binding subunit of smooth muscle my	7e-29
1s70_B	299	130 kDa myosin-binding subunit of smooth muscle my	2e-23
2jab_A	136	H10-2-G3; HER2, darpin, ankyrin repeat protein, me	4e-33
2jab_A	136	H10-2-G3; HER2, darpin, ankyrin repeat protein, me	2e-30
2jab_A	136	H10-2-G3; HER2, darpin, ankyrin repeat protein, me	1e-09
3hra_A	201	Ankyrin repeat family protein; structural protein;	9e-33
3hra_A	201	Ankyrin repeat family protein; structural protein;	1e-29
3hra_A	201	Ankyrin repeat family protein; structural protein;	4e-29
3hra_A	201	Ankyrin repeat family protein; structural protein;	1e-25
1yyh_A	253	HN1;, notch 1, ankyrin domain; ankyrin repeats, ce	1e-32
1yyh_A	253	HN1;, notch 1, ankyrin domain; ankyrin repeats, ce	2e-32
1yyh_A	253	HN1;, notch 1, ankyrin domain; ankyrin repeats, ce	2e-31
1yyh_A	253	HN1;, notch 1, ankyrin domain; ankyrin repeats, ce	7e-29
1yyh_A	253	HN1;, notch 1, ankyrin domain; ankyrin repeats, ce	5e-05
1bi7_B	156	P16INK4A, MTS1, multiple tumor suppressor; cyclin	1e-32
1bi7_B	156	P16INK4A, MTS1, multiple tumor suppressor; cyclin	2e-32
1bi7_B	156	P16INK4A, MTS1, multiple tumor suppressor; cyclin	7e-23
1bi7_B	156	P16INK4A, MTS1, multiple tumor suppressor; cyclin	3e-21
1bi7_B	156	P16INK4A, MTS1, multiple tumor suppressor; cyclin	1e-11
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	1e-32
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	6e-32
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	1e-30
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	6e-26
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	6e-24
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	2e-20
1bd8_A	156	P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyr	3e-32
1bd8_A	156	P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyr	4e-32
1bd8_A	156	P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyr	3e-30
2pnn_A	273	Transient receptor potential cation channel subfa	2e-30
2pnn_A	273	Transient receptor potential cation channel subfa	4e-25
2pnn_A	273	Transient receptor potential cation channel subfa	5e-21
2pnn_A	273	Transient receptor potential cation channel subfa	4e-18
2pnn_A	273	Transient receptor potential cation channel subfa	1e-12
2pnn_A	273	Transient receptor potential cation channel subfa	8e-09
3ehr_A	222	Osteoclast-stimulating factor 1; beta barrel, heli	2e-30
3ehr_A	222	Osteoclast-stimulating factor 1; beta barrel, heli	5e-28
3ehr_A	222	Osteoclast-stimulating factor 1; beta barrel, heli	1e-23
3ehr_A	222	Osteoclast-stimulating factor 1; beta barrel, heli	6e-23
2rfm_A	192	Putative ankyrin repeat protein TV1425; ANK repeat	7e-30
2rfm_A	192	Putative ankyrin repeat protein TV1425; ANK repeat	8e-27
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	1e-29
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	2e-29
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	4e-28
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	6e-25
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	2e-21
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	1e-17
3aji_A	231	26S proteasome non-ATPase regulatory subunit 10; g	1e-28
3aji_A	231	26S proteasome non-ATPase regulatory subunit 10; g	3e-25
3aji_A	231	26S proteasome non-ATPase regulatory subunit 10; g	3e-21
3aji_A	231	26S proteasome non-ATPase regulatory subunit 10; g	3e-21
2zgd_A	110	3 repeat synthetic ankyrin; ankyrin repeat, hydrox	3e-28
2zgd_A	110	3 repeat synthetic ankyrin; ankyrin repeat, hydrox	2e-27
2zgd_A	110	3 repeat synthetic ankyrin; ankyrin repeat, hydrox	5e-18
3t8k_A	186	Uncharacterized protein; structural genomics, PSI-	3e-28
3t8k_A	186	Uncharacterized protein; structural genomics, PSI-	9e-28
3t8k_A	186	Uncharacterized protein; structural genomics, PSI-	8e-24
3t8k_A	186	Uncharacterized protein; structural genomics, PSI-	7e-17
2etb_A	256	Transient receptor potential cation channel subfam	4e-27
2etb_A	256	Transient receptor potential cation channel subfam	1e-26
2etb_A	256	Transient receptor potential cation channel subfam	6e-26
2etb_A	256	Transient receptor potential cation channel subfam	1e-16
2etb_A	256	Transient receptor potential cation channel subfam	3e-15
2etb_A	256	Transient receptor potential cation channel subfam	1e-07
2etb_A	256	Transient receptor potential cation channel subfam	6e-04
3jxi_A	260	Vanilloid receptor-related osmotically activated p	1e-26
3jxi_A	260	Vanilloid receptor-related osmotically activated p	7e-26
3jxi_A	260	Vanilloid receptor-related osmotically activated p	3e-23
3jxi_A	260	Vanilloid receptor-related osmotically activated p	1e-18
3jxi_A	260	Vanilloid receptor-related osmotically activated p	1e-12
3jxi_A	260	Vanilloid receptor-related osmotically activated p	5e-09
2aja_A	376	Ankyrin repeat family protein; NESG, Q5ZSV0, struc	1e-24
2aja_A	376	Ankyrin repeat family protein; NESG, Q5ZSV0, struc	2e-22
2aja_A	376	Ankyrin repeat family protein; NESG, Q5ZSV0, struc	4e-15
2aja_A	376	Ankyrin repeat family protein; NESG, Q5ZSV0, struc	1e-14
2aja_A	376	Ankyrin repeat family protein; NESG, Q5ZSV0, struc	3e-12
1sw6_A	327	Regulatory protein SWI6; transcription regulation,	1e-17
1sw6_A	327	Regulatory protein SWI6; transcription regulation,	3e-17
1sw6_A	327	Regulatory protein SWI6; transcription regulation,	4e-16
1sw6_A	327	Regulatory protein SWI6; transcription regulation,	2e-13
1sw6_A	327	Regulatory protein SWI6; transcription regulation,	7e-11
1dcq_A	278	PYK2-associated protein beta; zinc-binding module,	2e-13
3lvq_E	497	ARF-GAP with SH3 domain, ANK repeat and PH domain	3e-13
3lvq_E	497	ARF-GAP with SH3 domain, ANK repeat and PH domain	4e-10
2b0o_E	301	UPLC1; arfgap, structural genomics, structural gen	2e-12
2b0o_E	301	UPLC1; arfgap, structural genomics, structural gen	6e-12
3jue_A	368	Arfgap with coiled-coil, ANK repeat and PH domain	1e-11
3jue_A	368	Arfgap with coiled-coil, ANK repeat and PH domain	5e-11
3jue_A	368	Arfgap with coiled-coil, ANK repeat and PH domain	6e-06

>3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat, helix, extended loop, four repeat, PR ANK repeat, disease mutation, metal-binding; 2.00A {Homo sapiens} SCOP: k.37.1.1 Length = 137

 Score =  129 bits (328), Expect = 7e-39
 Identities = 45/123 (36%), Positives = 61/123 (49%), Gaps = 14/123 (11%)

Query: 29  IDTDDRGWTPLHIGARKGDIKLVKQLLDEGMDVNVAAWGPKSK-GVTPLHLAAQGGHLEV 87
             T+ RG T LHI + KGDI  V+ LL  G D NV     K   G TPLH A   GHL+V
Sbjct: 4   PFTNHRGETLLHIASIKGDIPSVEYLLQNGSDPNV-----KDHAGWTPLHEACNHGHLKV 58

Query: 88  MDVLLERGADIDARTKGACGWTPLHTAAKERKKEAVRFLIENGAFLPDDIN--DSRFNPP 145
           +++LL+  A ++         +PLH AAK    + V+ L+  GA      N  +     P
Sbjct: 59  VELLLQHKALVNTTGY--QNDSPLHDAAKNGHVDIVKLLLSYGA----SRNAVNIFGLRP 112

Query: 146 LHY 148
           + Y
Sbjct: 113 VDY 115

>3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat, helix, extended loop, four repeat, PR ANK repeat, disease mutation, metal-binding; 2.00A {Homo sapiens} SCOP: k.37.1.1 Length = 137

 Score =  116 bits (294), Expect = 7e-34
 Identities = 31/100 (31%), Positives = 47/100 (47%), Gaps = 6/100 (6%)

Query: 32  DDRGWTPLHIGARKGDIKLVKQLLDEGMDVNVAAWGPKSKGVTPLHLAAQGGHLEVMDVL 91
           D  GWTPLH     G +K+V+ LL     VN        +  +PLH AA+ GH++++ +L
Sbjct: 40  DHAGWTPLHEACNHGHLKVVELLLQHKALVNTTG----YQNDSPLHDAAKNGHVDIVKLL 95

Query: 92  LERGADIDARTKGACGWTPLHTAAKERKKEAVRFLIENGA 131
           L  GA  +A      G  P+     E  K  +    +N +
Sbjct: 96  LSYGASRNAVNIF--GLRPVDYTDDESMKSLLLLPEKNES 133

>3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat, helix, extended loop, four repeat, PR ANK repeat, disease mutation, metal-binding; 2.00A {Homo sapiens} SCOP: k.37.1.1 Length = 137

 Score = 71.3 bits (176), Expect = 3e-16
 Identities = 17/71 (23%), Positives = 28/71 (39%), Gaps = 7/71 (9%)

Query: 31  TDDRGWTPLHIGARKGDIKLVKQLLDEGMDVNVAAWGPKSK-GVTPLHLAAQGGHLEVMD 89
           T  +  +PLH  A+ G + +VK LL  G   N       +  G+ P+          ++ 
Sbjct: 72  TGYQNDSPLHDAAKNGHVDIVKLLLSYGASRNA-----VNIFGLRPVDYTDDESMKSLLL 126

Query: 90  VLLERGADIDA 100
            L E+     A
Sbjct: 127 -LPEKNESSSA 136

>2l6b_A NR1C; ankyrin, consensus, repeat protein, ising model, DE NOV; NMR {Escherichia coli} Length = 115

 Score =  127 bits (321), Expect = 4e-38
 Identities = 48/119 (40%), Positives = 65/119 (54%), Gaps = 12/119 (10%)

Query: 32  DDRGWTPLHIGARKGDIKLVKQLLDEGMDVNVAAWGPKSKGVTPLHLAAQGGHLEVMDVL 91
              G TPLH  A+ G  + VK+LL +G DVN  +      G TPLHLAA+ GH E++ +L
Sbjct: 6   SKDGNTPLHNAAKNGHAEEVKKLLSKGADVNARS----KDGNTPLHLAAKNGHAEIVKLL 61

Query: 92  LERGADIDARTKGACGWTPLHTAAKERKKEAVRFLIENGAFLPDDIN--DSRFNPPLHY 148
           L +GAD++AR+K   G TP H A K    E V+ L   GA    D+N      +   H+
Sbjct: 62  LAKGADVNARSKD--GNTPEHLAKKNGHHEIVKLLDAKGA----DVNARSWGSSHHHHH 114

>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A Length = 172

 Score =  127 bits (322), Expect = 1e-37
 Identities = 36/120 (30%), Positives = 59/120 (49%), Gaps = 12/120 (10%)

Query: 31  TDDRGWTPLHIGARKGDIKLVKQLLDEGMDVNVAAWGPKSKGVTPLHLAAQGGHLEVMDV 90
            D+RG+TPL   +  G+I+ V+ LL+ G D ++ A     +  + L LA+ GG+ +++ +
Sbjct: 32  PDERGFTPLIWASAFGEIETVRFLLEWGADPHILA----KERESALSLASTGGYTDIVGL 87

Query: 91  LLERGADIDARTKGACGWTPLHTAAKERKKEAVRFLIENGAFLPDDIN--DSRFNPPLHY 148
           LLER  DI+       G TPL  A +    + V  L+  GA    D+         P+  
Sbjct: 88  LLERDVDINIYDW--NGGTPLLYAVRGNHVKCVEALLARGA----DLTTEADSGYTPMDL 141

>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A Length = 172

 Score =  121 bits (306), Expect = 3e-35
 Identities = 25/107 (23%), Positives = 47/107 (43%), Gaps = 10/107 (9%)

Query: 32  DDRGWTPLHIGARKGDIKLVKQLLDEGMDVNVAAWGPKSKGVTPLHLAAQGGHLEVMDVL 91
                + L + +  G   +V  LL+  +D+N+  W     G TPL  A +G H++ ++ L
Sbjct: 66  AKERESALSLASTGGYTDIVGLLLERDVDINIYDW----NGGTPLLYAVRGNHVKCVEAL 121

Query: 92  LERGADIDARTKGACGWTPLHTAAKERKKEAVRFLIENGAFLPDDIN 138
           L RGAD+        G+TP+  A     ++  + +  +       + 
Sbjct: 122 LARGADLTTEADS--GYTPMDLAVALGYRKVQQVIENHIL----KLF 162

>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A Length = 172

 Score =  116 bits (294), Expect = 2e-33
 Identities = 34/117 (29%), Positives = 50/117 (42%), Gaps = 13/117 (11%)

Query: 35  GWTPLHIGARKGDIKLVKQLLDEGMD-VNVAAWGPKSKGVTPLHLAAQGGHLEVMDVLLE 93
               +H  A +G++  +K+ L +G + VN        +G TPL  A+  G +E +  LLE
Sbjct: 2   DSLSIHQLAAQGELDQLKEHLRKGDNLVNKP----DERGFTPLIWASAFGEIETVRFLLE 57

Query: 94  RGADIDARTKGACGWTPLHTAAKERKKEAVRFLIENGAFLPDDIN--DSRFNPPLHY 148
            GAD     K     + L  A+     + V  L+E       DIN  D     PL Y
Sbjct: 58  WGADPHILAKE--RESALSLASTGGYTDIVGLLLERDV----DINIYDWNGGTPLLY 108

>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A Length = 172

 Score = 94.4 bits (236), Expect = 1e-24
 Identities = 22/79 (27%), Positives = 30/79 (37%), Gaps = 6/79 (7%)

Query: 32  DDRGWTPLHIGARKGDIKLVKQLLDEGMDVNVAAWGPKSKGVTPLHLAAQGGHLEVMDVL 91
           D  G TPL    R   +K V+ LL  G D+   A      G TP+ LA   G+ +V  V+
Sbjct: 99  DWNGGTPLLYAVRGNHVKCVEALLARGADLTTEA----DSGYTPMDLAVALGYRKVQQVI 154

Query: 92  LERGADIDARTKGACGWTP 110
                 +           P
Sbjct: 155 ENHILKLFQSNLV--PADP 171

>3aaa_C Myotrophin, protein V-1; actin capping protein, barbed END capping, inhibition, prote binding, actin capping, actin-binding, cytoskeleton, ANK RE; 2.20A {Homo sapiens} PDB: 1myo_A 2kxp_C 2myo_A Length = 123

 Score =  123 bits (312), Expect = 1e-36
 Identities = 35/116 (30%), Positives = 47/116 (40%), Gaps = 12/116 (10%)

Query: 35  GWTPLHIGARKGDIKLVKQLLDEGMDVNVAAWGPKSKGVTPLHLAAQGGHLEVMDVLLER 94
                    + GD+  VK  + +G DVN         G  PLH AA  G LE+++ LL +
Sbjct: 7   CDKEFMWALKNGDLDEVKDYVAKGEDVNRTL----EGGRKPLHYAADCGQLEILEFLLLK 62

Query: 95  GADIDARTKGACGWTPLHTAAKERKKEAVRFLIENGAFLPDDIN--DSRFNPPLHY 148
           GADI+A  K     TPL +A  E     V+ L+  GA    D              
Sbjct: 63  GADINAPDKH--HITPLLSAVYEGHVSCVKLLLSKGA----DKTVKGPDGLTAFEA 112

>3aaa_C Myotrophin, protein V-1; actin capping protein, barbed END capping, inhibition, prote binding, actin capping, actin-binding, cytoskeleton, ANK RE; 2.20A {Homo sapiens} PDB: 1myo_A 2kxp_C 2myo_A Length = 123

 Score =  101 bits (255), Expect = 4e-28
 Identities = 27/95 (28%), Positives = 44/95 (46%), Gaps = 8/95 (8%)

Query: 31  TDDRGWTPLHIGARKGDIKLVKQLLDEGMDVNVAAWGPKSK-GVTPLHLAAQGGHLEVMD 89
           T + G  PLH  A  G +++++ LL +G D+N        K  +TPL  A   GH+  + 
Sbjct: 36  TLEGGRKPLHYAADCGQLEILEFLLLKGADINA-----PDKHHITPLLSAVYEGHVSCVK 90

Query: 90  VLLERGADIDARTKGACGWTPLHTAAKERKKEAVR 124
           +LL +GAD   +     G T       +  K  ++
Sbjct: 91  LLLSKGADKTVKGPD--GLTAFEATDNQAIKALLQ 123

>3aaa_C Myotrophin, protein V-1; actin capping protein, barbed END capping, inhibition, prote binding, actin capping, actin-binding, cytoskeleton, ANK RE; 2.20A {Homo sapiens} PDB: 1myo_A 2kxp_C 2myo_A Length = 123

 Score = 89.4 bits (223), Expect = 2e-23
 Identities = 26/85 (30%), Positives = 37/85 (43%), Gaps = 9/85 (10%)

Query: 67  GPK-SKGVTPLHLAAQGGHLEVMDVLLERGADIDARTKGACGWTPLHTAAKERKKEAVRF 125
           GP  S        A + G L+ +   + +G D++   +G  G  PLH AA   + E + F
Sbjct: 1   GPLGSMCDKEFMWALKNGDLDEVKDYVAKGEDVNRTLEG--GRKPLHYAADCGQLEILEF 58

Query: 126 LIENGAFLPDDIN--DSRFNPPLHY 148
           L+  GA    DIN  D     PL  
Sbjct: 59  LLLKGA----DINAPDKHHITPLLS 79

>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens} Length = 285

 Score =  128 bits (324), Expect = 1e-36
 Identities = 35/122 (28%), Positives = 57/122 (46%), Gaps = 12/122 (9%)

Query: 28  VIDTDDRGWTPLHIGARKGDIKLVKQLLDEGMDVNVAAWGPKSKGVTPLHLAAQGGHLEV 87
           + D     W+P+H  A  G    ++ L+ +G  VN+      +  V+PLH A  GGHL  
Sbjct: 53  MGDAVS-DWSPMHEAAIHGHQLSLRNLISQGWAVNIIT----ADHVSPLHEACLGGHLSC 107

Query: 88  MDVLLERGADIDARTKGACGWTPLHTAAKERKKEAVRFLIENGAFLPDDIN-DSRFNPPL 146
           + +LL+ GA ++  T      TPL  A      + V  L+++GA     +  +S    P+
Sbjct: 108 VKILLKHGAQVNGVTA--DWHTPLFNACVSGSWDCVNLLLQHGA----SVQPESDLASPI 161

Query: 147 HY 148
           H 
Sbjct: 162 HE 163

>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens} Length = 285

 Score =  125 bits (317), Expect = 1e-35
 Identities = 36/118 (30%), Positives = 56/118 (47%), Gaps = 12/118 (10%)

Query: 32  DDRGWTPLHIGARKGDIKLVKQLLDEGMDVNVAAWGPKSKGVTPLHLAAQGGHLEVMDVL 91
                TPL      G    V  LL  G  V      P+S   +P+H AA+ GH+E ++ L
Sbjct: 122 TADWHTPLFNACVSGSWDCVNLLLQHGASVQ-----PESDLASPIHEAARRGHVECVNSL 176

Query: 92  LERGADIDARTKGACGWTPLHTAAKERKKEAVRFLIENGAFLPDDIN-DSRFNPPLHY 148
           +  G +ID +       TPL+ A + +++  V+ L+E+GA    D+N     + PLH 
Sbjct: 177 IAYGGNIDHKIS--HLGTPLYLACENQQRACVKKLLESGA----DVNQGKGQDSPLHA 228

>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens} Length = 285

 Score =  121 bits (305), Expect = 9e-34
 Identities = 30/122 (24%), Positives = 55/122 (45%), Gaps = 13/122 (10%)

Query: 29  IDTDDRGWTPLHIGARKGDIKLVKQLLDEGMDVNVAAWGPKSKGVTPLHLAAQGGHLEVM 88
           +  +    +P+H  AR+G ++ V  L+  G +++       S   TPL+LA +      +
Sbjct: 151 VQPESDLASPIHEAARRGHVECVNSLIAYGGNIDHKI----SHLGTPLYLACENQQRACV 206

Query: 89  DVLLERGADIDARTKGACGWTPLHTAAKERKKEAVRFLIENGAFLPDDIN--DSRFNPPL 146
             LLE GAD++   +G    +PLH   +   +E    L++ GA    D    ++    P+
Sbjct: 207 KKLLESGADVN---QGKGQDSPLHAVVRTASEELACLLMDFGA----DTQAKNAEGKRPV 259

Query: 147 HY 148
             
Sbjct: 260 EL 261

>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens} Length = 285

 Score =  112 bits (283), Expect = 1e-30
 Identities = 28/108 (25%), Positives = 43/108 (39%), Gaps = 14/108 (12%)

Query: 32  DDRGWTPLHIGARKGDIKLVKQLLDEGMDVNVAAWGPKSK-GVTPLHLAAQGGHLEVMDV 90
                TPL++         VK+LL+ G DVN      + K   +PLH   +    E+  +
Sbjct: 187 ISHLGTPLYLACENQQRACVKKLLESGADVN------QGKGQDSPLHAVVRTASEELACL 240

Query: 91  LLERGADIDARTKGACGWTPLHTAAKERKKEAVRFLIENGAFLPDDIN 138
           L++ GAD  A+     G  P+     E     + FL   GA     + 
Sbjct: 241 LMDFGADTQAKNA--EGKRPVELVPPESPLAQL-FLEREGA----SLP 281

>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens} Length = 285

 Score = 97.2 bits (243), Expect = 9e-25
 Identities = 25/116 (21%), Positives = 44/116 (37%), Gaps = 19/116 (16%)

Query: 35  GWTPLHIGARKGDIKLVKQLLDEGMDVNVAAWGPKSKGVTPLHLAAQGGHLEVMDVLLER 94
           G  P       G      +LL   +  +           +P+H AA  GH   +  L+ +
Sbjct: 33  GSKPAGPRDFPG-----IRLLSNPLMGD------AVSDWSPMHEAAIHGHQLSLRNLISQ 81

Query: 95  GADIDARTKGACGWTPLHTAAKERKKEAVRFLIENGAFLPDDIN--DSRFNPPLHY 148
           G  ++  T      +PLH A        V+ L+++GA     +N   + ++ PL  
Sbjct: 82  GWAVNIITAD--HVSPLHEACLGGHLSCVKILLKHGA----QVNGVTADWHTPLFN 131

>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens} Length = 285

 Score = 79.8 bits (198), Expect = 3e-18
 Identities = 23/111 (20%), Positives = 35/111 (31%), Gaps = 16/111 (14%)

Query: 41  IGARKGDIKLVKQLLDEGMDVNVA-AWGPKSKGVTPLHLAAQGGHLEVMDVLLERGADID 99
           +G+          L+  G  +           G  P       G       LL      D
Sbjct: 1   MGSSHHHHHHSSGLVPRGSHMASMDGKQGGMDGSKPAGPRDFPGIR-----LLSNPLMGD 55

Query: 100 ARTKGACGWTPLHTAAKERKKEAVRFLIENGAFLPDDIN--DSRFNPPLHY 148
           A +     W+P+H AA    + ++R LI  G      +N   +    PLH 
Sbjct: 56  AVS----DWSPMHEAAIHGHQLSLRNLISQGW----AVNIITADHVSPLHE 98

>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens} Length = 285

 Score = 76.0 bits (188), Expect = 6e-17
 Identities = 16/72 (22%), Positives = 26/72 (36%), Gaps = 5/72 (6%)

Query: 29  IDTDDRGWTPLHIGARKGDIKLVKQLLDEGMDVNVAAWGPKSKGVTPLHLAAQGGHLEVM 88
           ++      +PLH   R    +L   L+D G D         ++G  P+ L      L  +
Sbjct: 216 VNQGKGQDSPLHAVVRTASEELACLLMDFGADTQAKN----AEGKRPVELVPPESPLAQL 271

Query: 89  DVLLERGADIDA 100
             L   GA +  
Sbjct: 272 -FLEREGASLPK 282

>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A Length = 179

 Score =  124 bits (315), Expect = 2e-36
 Identities = 37/120 (30%), Positives = 56/120 (46%), Gaps = 13/120 (10%)

Query: 32  DDRGWTPLHIGARKGDIKLVKQLLDEG-MDVNVAAWGPKSKGVTPLHLAAQGGHLEVMDV 90
                  +    R+G+   V+  LD    D+N         G +PLH A + G   V+++
Sbjct: 2   SPEFMDDIFTQCREGNAVAVRLWLDNTENDLNQGD----DHGFSPLHWACREGRSAVVEM 57

Query: 91  LLERGADIDARTKGACGWTPLHTAAKERKKEAVRFLIENGAFLPDDIN--DSRFNPPLHY 148
           L+ RGA I+   +G    TPLH AA    ++ V+ L++  A    DIN  +   N PLHY
Sbjct: 58  LIMRGARINVMNRG--DDTPLHLAASHGHRDIVQKLLQYKA----DINAVNEHGNVPLHY 111

>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A Length = 179

 Score =  120 bits (304), Expect = 7e-35
 Identities = 39/120 (32%), Positives = 59/120 (49%), Gaps = 12/120 (10%)

Query: 31  TDDRGWTPLHIGARKGDIKLVKQLLDEGMDVNVAAWGPKSKGVTPLHLAAQGGHLEVMDV 90
            DD G++PLH   R+G   +V+ L+  G  +NV   G      TPLHLAA  GH +++  
Sbjct: 35  GDDHGFSPLHWACREGRSAVVEMLIMRGARINVMNRG----DDTPLHLAASHGHRDIVQK 90

Query: 91  LLERGADIDARTKGACGWTPLHTAAKERKKEAVRFLIENGAFLPDDIN--DSRFNPPLHY 148
           LL+  ADI+A  +   G  PLH A    + +    L+ NGA     ++  +     P+  
Sbjct: 91  LLQYKADINAVNE--HGNVPLHYACFWGQDQVAEDLVANGA----LVSICNKYGEMPVDK 144

>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A Length = 179

 Score =  117 bits (296), Expect = 1e-33
 Identities = 27/108 (25%), Positives = 43/108 (39%), Gaps = 10/108 (9%)

Query: 31  TDDRGWTPLHIGARKGDIKLVKQLLDEGMDVNVAAWGPKSKGVTPLHLAAQGGHLEVMDV 90
            +    TPLH+ A  G   +V++LL    D+N         G  PLH A   G  +V + 
Sbjct: 68  MNRGDDTPLHLAASHGHRDIVQKLLQYKADINAV----NEHGNVPLHYACFWGQDQVAED 123

Query: 91  LLERGADIDARTKGACGWTPLHTAAKERKKEAVRFLIENGAFLPDDIN 138
           L+  GA +    K   G  P+  A    ++       + G     ++N
Sbjct: 124 LVANGALVSICNK--YGEMPVDKAKAPLRELLRERAEKMGQ----NLN 165

>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A Length = 179

 Score = 82.5 bits (205), Expect = 4e-20
 Identities = 13/87 (14%), Positives = 29/87 (33%), Gaps = 12/87 (13%)

Query: 31  TDDRGWTPLHIGARKGDIKLVKQLLDEGMDVNVAAWGPKSKGVTPLHLAAQGGHLEVMDV 90
            ++ G  PLH     G  ++ + L+  G  V++        G  P+  A       + + 
Sbjct: 101 VNEHGNVPLHYACFWGQDQVAEDLVANGALVSICN----KYGEMPVDKAKAPLRELLRER 156

Query: 91  LLERGADIDARTKGACGWTPLHTAAKE 117
             + G +++          P      +
Sbjct: 157 AEKMGQNLNR--------IPYKDTFWK 175

>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A Length = 179

 Score = 48.2 bits (116), Expect = 2e-07
 Identities = 7/54 (12%), Positives = 13/54 (24%), Gaps = 10/54 (18%)

Query: 32  DDRGWTPLHIGARKGDIKLVKQLLDEGMDVNVAAWGPKSKGVTPLHLAAQGGHL 85
           +  G  P+          L ++    G ++N            P       G  
Sbjct: 135 NKYGEMPVDKAKAPLRELLRERAEKMGQNLNR----------IPYKDTFWKGTT 178

>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A Length = 167

 Score =  124 bits (313), Expect = 2e-36
 Identities = 33/120 (27%), Positives = 52/120 (43%), Gaps = 12/120 (10%)

Query: 31  TDDRGWTPLHIGARKGDIKLVKQLLDEGMDVNVAAWGPKSKGVTPLHLAAQGGHLEVMDV 90
           TD+ G+TPL   A  G I +V+ LL  G D  +          + L LA   G+ +++ +
Sbjct: 32  TDEEGFTPLMWAAAHGQIAVVEFLLQNGADPQLLG----KGRESALSLACSKGYTDIVKM 87

Query: 91  LLERGADIDARTKGACGWTPLHTAAKERKKEAVRFLIENGAFLPDDIN--DSRFNPPLHY 148
           LL+ G D++       G TPL  A      + V+ L+E+GA    D           +  
Sbjct: 88  LLDCGVDVNEYDWN--GGTPLLYAVHGNHVKCVKMLLESGA----DPTIETDSGYNSMDL 141

>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A Length = 167

 Score =  123 bits (311), Expect = 5e-36
 Identities = 30/117 (25%), Positives = 51/117 (43%), Gaps = 12/117 (10%)

Query: 34  RGWTPLHIGARKGDIKLVKQLLDEGMDVNVAAWGPKSKGVTPLHLAAQGGHLEVMDVLLE 93
                +H  A +G++  +   +++   +N        +G TPL  AA  G + V++ LL+
Sbjct: 2   ANSLSVHQLAAQGEMLYLATRIEQENVINHT----DEEGFTPLMWAAAHGQIAVVEFLLQ 57

Query: 94  RGADIDARTKGACGWTPLHTAAKERKKEAVRFLIENGAFLPDDIN--DSRFNPPLHY 148
            GAD     KG    + L  A  +   + V+ L++ G     D+N  D     PL Y
Sbjct: 58  NGADPQLLGKG--RESALSLACSKGYTDIVKMLLDCGV----DVNEYDWNGGTPLLY 108

>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A Length = 167

 Score =  120 bits (304), Expect = 6e-35
 Identities = 29/107 (27%), Positives = 44/107 (41%), Gaps = 10/107 (9%)

Query: 32  DDRGWTPLHIGARKGDIKLVKQLLDEGMDVNVAAWGPKSKGVTPLHLAAQGGHLEVMDVL 91
                + L +   KG   +VK LLD G+DVN   W     G TPL  A  G H++ + +L
Sbjct: 66  GKGRESALSLACSKGYTDIVKMLLDCGVDVNEYDW----NGGTPLLYAVHGNHVKCVKML 121

Query: 92  LERGADIDARTKGACGWTPLHTAAKERKKEAVRFLIENGAFLPDDIN 138
           LE GAD    T    G+  +  A     +   + +  +       + 
Sbjct: 122 LESGADPTIETDS--GYNSMDLAVALGYRSVQQVIESHLL----KLL 162

>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A Length = 167

 Score = 88.6 bits (221), Expect = 1e-22
 Identities = 19/73 (26%), Positives = 26/73 (35%), Gaps = 4/73 (5%)

Query: 31  TDDRGWTPLHIGARKGDIKLVKQLLDEGMDVNVAAWGPKSKGVTPLHLAAQGGHLEVMDV 90
            D  G TPL        +K VK LL+ G D  +        G   + LA   G+  V  V
Sbjct: 98  YDWNGGTPLLYAVHGNHVKCVKMLLESGADPTIET----DSGYNSMDLAVALGYRSVQQV 153

Query: 91  LLERGADIDARTK 103
           +      +    K
Sbjct: 154 IESHLLKLLQNIK 166

>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B Length = 239

 Score =  126 bits (318), Expect = 2e-36
 Identities = 27/119 (22%), Positives = 43/119 (36%), Gaps = 13/119 (10%)

Query: 32  DDRGWTPLHIGARKGDIKLVKQLLDEGMDVNVAAWGPKSKGVTPLHLAAQGGHLEVMDVL 91
           +  G   L  G R    K   + +  GM V           +  L  ++  G  +++  +
Sbjct: 2   EITGQVSLPPGKRTNLRKTGSERIAHGMRVKF-----NPLPLALLLDSSLEGEFDLVQRI 56

Query: 92  LERGADIDARTKGACGWTPLHTAAKERKKEAVRFLIENGAFLPDDIN--DSRFNPPLHY 148
           +    D         G T LH A      E V+FL++ G     ++N  DS    PLH 
Sbjct: 57  IYEVDDPSLPNDE--GITALHNAVCAGHTEIVKFLVQFGV----NVNAADSDGWTPLHC 109

>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B Length = 239

 Score =  126 bits (318), Expect = 3e-36
 Identities = 31/125 (24%), Positives = 57/125 (45%), Gaps = 15/125 (12%)

Query: 29  IDTDDRGWTPLHIGARKGDIKLVKQLLDEGMDVNVAAWGPKSKGVTPLHLAAQGGHLEVM 88
           +  +      L   + +G+  LV++++ E  D ++       +G+T LH A   GH E++
Sbjct: 31  VKFNPLPLALLLDSSLEGEFDLVQRIIYEVDDPSLP----NDEGITALHNAVCAGHTEIV 86

Query: 89  DVLLERGADIDARTKGACGWTPLHTAAKERKKEAVRFLIENGAFLPDDIN-----DSRFN 143
             L++ G +++A      GWTPLH AA     +  +FL+E+GA     +      D +  
Sbjct: 87  KFLVQFGVNVNAADS--DGWTPLHCAASCNNVQVCKFLVESGA----AVFAMTYSDMQTA 140

Query: 144 PPLHY 148
                
Sbjct: 141 ADKCE 145

>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B Length = 239

 Score = 93.1 bits (232), Expect = 1e-23
 Identities = 19/100 (19%), Positives = 34/100 (34%), Gaps = 6/100 (6%)

Query: 32  DDRGWTPLHIGARKGDIKLVKQLLDEGMDVNVAAWGPKSKGVTPLHLAAQGGHLEVMDVL 91
           D  GWTPLH  A   ++++ K L++ G  V    +    +         + G+ +    L
Sbjct: 100 DSDGWTPLHCAASCNNVQVCKFLVESGAAVFAMTYSDM-QTAADKCEEMEEGYTQCSQFL 158

Query: 92  LERGADIDARTKGACGWTPLHTAAKERKKEAVRFLIENGA 131
                 +    KG      L     +   E     ++ G 
Sbjct: 159 YGVQEKMGIMNKG--VIYALWDYEPQNDDE---LPMKEGD 193

>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B Length = 239

 Score = 80.0 bits (198), Expect = 1e-18
 Identities = 11/84 (13%), Positives = 24/84 (28%), Gaps = 9/84 (10%)

Query: 68  PKSKGVTPLHLAAQGGHLEVMDVLLERGADIDARTKGACGWTPLHTAAKERKKEAVRFLI 127
           P+  G   L    +    +     +  G  +            L  ++ E + + V+ +I
Sbjct: 1   PEITGQVSLPPGKRTNLRKTGSERIAHGMRVKFNPL---PLALLLDSSLEGEFDLVQRII 57

Query: 128 ENGAFLPDDIN--DSRFNPPLHYC 149
                   D +  +      LH  
Sbjct: 58  YEVD----DPSLPNDEGITALHNA 77

>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B Length = 239

 Score = 58.4 bits (142), Expect = 9e-11
 Identities = 7/87 (8%), Positives = 20/87 (22%), Gaps = 7/87 (8%)

Query: 30  DTDDRGWTPLHIGARKGDIKLVKQLLDEGMDVNVAAWGPKSKGVTPLHLAAQGGHLEVMD 89
            +D +          +G  +  + L      + +         +  L         E   
Sbjct: 134 YSDMQTAADKCEEMEEGYTQCSQFLYGVQEKMGIM----NKGVIYALWDYEPQNDDE--- 186

Query: 90  VLLERGADIDARTKGACGWTPLHTAAK 116
           + ++ G  +    +          A  
Sbjct: 187 LPMKEGDCMTIIHREDEDEIEWWWARL 213

>1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP: k.37.1.1 Length = 126

 Score =  122 bits (308), Expect = 4e-36
 Identities = 56/116 (48%), Positives = 71/116 (61%), Gaps = 12/116 (10%)

Query: 35  GWTPLHIGARKGDIKLVKQLLDEGMDVNVAAWGPKSKGVTPLHLAAQGGHLEVMDVLLER 94
           G TPLH+ AR G +++VK LL+ G DVN         G TPLHLAA+ GHLEV+ +LLE 
Sbjct: 2   GRTPLHLAARNGHLEVVKLLLEAGADVNAKD----KNGRTPLHLAARNGHLEVVKLLLEA 57

Query: 95  GADIDARTKGACGWTPLHTAAKERKKEAVRFLIENGAFLPDDIN--DSRFNPPLHY 148
           GAD++A+ K   G TPLH AA+    E V+ L+E GA    D+N  D     PLH 
Sbjct: 58  GADVNAKDKN--GRTPLHLAARNGHLEVVKLLLEAGA----DVNAKDKNGRTPLHL 107

>1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP: k.37.1.1 Length = 126

 Score =  118 bits (300), Expect = 7e-35
 Identities = 51/101 (50%), Positives = 66/101 (65%), Gaps = 6/101 (5%)

Query: 32  DDRGWTPLHIGARKGDIKLVKQLLDEGMDVNVAAWGPKSKGVTPLHLAAQGGHLEVMDVL 91
           D  G TPLH+ AR G +++VK LL+ G DVN         G TPLHLAA+ GHLEV+ +L
Sbjct: 32  DKNGRTPLHLAARNGHLEVVKLLLEAGADVNAKD----KNGRTPLHLAARNGHLEVVKLL 87

Query: 92  LERGADIDARTKGACGWTPLHTAAKERKKEAVRFLIENGAF 132
           LE GAD++A+ K   G TPLH AA+    E V+ L+E GA+
Sbjct: 88  LEAGADVNAKDKN--GRTPLHLAARNGHLEVVKLLLEAGAY 126

>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D Length = 282

 Score =  126 bits (319), Expect = 6e-36
 Identities = 38/119 (31%), Positives = 52/119 (43%), Gaps = 11/119 (9%)

Query: 32  DDRGWTPLHIGARKGDIKLVKQLLDEGMDVNVAAWGPKSKGVTPLHLAAQGGHLEVMDVL 91
           +  G TPLH+     D ++V+ L D G D+N       + G TPLHLA +     V+++L
Sbjct: 155 NYDGHTPLHVAVIHKDAEMVRLLRDAGADLNKPE---PTCGRTPLHLAVEAQAASVLELL 211

Query: 92  LERGADIDARTKGACGWTPLHTAAKERKKEAVRFLIENGAFLPDDIN--DSRFNPPLHY 148
           L+ GAD  AR  G  G TPL +A         R L  +GA               P   
Sbjct: 212 LKAGADPTARMYG--GRTPLGSALLRPNPILARLLRAHGA----PEPEDGGDKLSPCSS 264

>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D Length = 282

 Score =  115 bits (290), Expect = 1e-31
 Identities = 28/112 (25%), Positives = 42/112 (37%), Gaps = 9/112 (8%)

Query: 31  TDDRGWTPLHIGARKGDIKLVKQLLDEGMD---VNVAAWGPKSKGVTPLHLAAQGGHLEV 87
             + G T LH+         +  LL        +++        G T LHLAA  G    
Sbjct: 5   VTEDGDTALHLAVIHQHEPFLDFLLGFSAGHEYLDLQN----DLGQTALHLAAILGEAST 60

Query: 88  MDVLLERGADIDARTKGACGWTPLHTAAKERKKEAVRFLIENGAFLPDDIND 139
           ++ L   GA +    +G  G T LH A + R       L++     P D +D
Sbjct: 61  VEKLYAAGAGVLVAERG--GHTALHLACRVRAHTCACVLLQPRPSHPRDASD 110

>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D Length = 282

 Score =  110 bits (277), Expect = 1e-29
 Identities = 28/121 (23%), Positives = 46/121 (38%), Gaps = 12/121 (9%)

Query: 31  TDDRGWTPLHIGARKGDIKLVKQLL-DEGMDVNVAAWGPKSKGVTPLHLAAQGGHLEVMD 89
           T D    P  + ++       +    D  + +          G TPLH+A      E++ 
Sbjct: 120 TPDTSHAPAAVDSQPNPENEEEPRDEDWRLQLEAEN----YDGHTPLHVAVIHKDAEMVR 175

Query: 90  VLLERGADIDARTKGACGWTPLHTAAKERKKEAVRFLIENGAFLPDDIN--DSRFNPPLH 147
           +L + GAD++      CG TPLH A + +    +  L++ GA    D          PL 
Sbjct: 176 LLRDAGADLNKPEPT-CGRTPLHLAVEAQAASVLELLLKAGA----DPTARMYGGRTPLG 230

Query: 148 Y 148
            
Sbjct: 231 S 231

>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D Length = 282

 Score =  101 bits (254), Expect = 2e-26
 Identities = 27/132 (20%), Positives = 41/132 (31%), Gaps = 22/132 (16%)

Query: 31  TDDRGWTPLHIGARKGDIKLVKQLLDEGMDVNVAAWGPKSKGVTPLHLAAQGGHLEVMDV 90
            +D G T LH+ A  G+   V++L   G  V VA       G T LHLA +        V
Sbjct: 41  QNDLGQTALHLAAILGEASTVEKLYAAGAGVLVAE----RGGHTALHLACRVRAHTCACV 96

Query: 91  LLERGADIDARTK-----------GACGWTPLHTAAKER-KKEAVRFLIENGAFLPDDIN 138
           LL+                           P    ++   + E      +        + 
Sbjct: 97  LLQPRPSHPRDASDTYLTQSQDCTPDTSHAPAAVDSQPNPENEEEPRDEDWRL----QLE 152

Query: 139 --DSRFNPPLHY 148
             +   + PLH 
Sbjct: 153 AENYDGHTPLHV 164

>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D Length = 282

 Score =  100 bits (252), Expect = 4e-26
 Identities = 19/100 (19%), Positives = 31/100 (31%), Gaps = 6/100 (6%)

Query: 31  TDDRGWTPLHIGARKGDIKLVKQLLDEGMDVNVAAWGPKSKGVTPLHLAAQGGHLEVMDV 90
               G TPLH+        +++ LL  G D           G TPL  A    +  +  +
Sbjct: 188 EPTCGRTPLHLAVEAQAASVLELLLKAGADPTARM----YGGRTPLGSALLRPNPILARL 243

Query: 91  LLERGADIDARTKGACGWTPLHTAAKERKKEAVRFLIENG 130
           L   GA            +P  ++  +   +      E  
Sbjct: 244 LRAHGAPEPEDGGD--KLSPCSSSGSDSDSDNRDEGDEYD 281

>1n0q_A 3ANK, 3 ankyrin repeats; structural protein; 1.26A {} SCOP: k.37.1.1 Length = 93

 Score =  120 bits (304), Expect = 7e-36
 Identities = 50/98 (51%), Positives = 65/98 (66%), Gaps = 6/98 (6%)

Query: 35  GWTPLHIGARKGDIKLVKQLLDEGMDVNVAAWGPKSKGVTPLHLAAQGGHLEVMDVLLER 94
           G TPLH+ AR G +++VK LL+ G DVN         G TPLHLAA+ GHLEV+ +LLE 
Sbjct: 2   GRTPLHLAARNGHLEVVKLLLEAGADVNAKD----KNGRTPLHLAARNGHLEVVKLLLEA 57

Query: 95  GADIDARTKGACGWTPLHTAAKERKKEAVRFLIENGAF 132
           GAD++A+ K   G TPLH AA+    E V+ L+E GA+
Sbjct: 58  GADVNAKDKN--GRTPLHLAARNGHLEVVKLLLEAGAY 93

>1n0q_A 3ANK, 3 ankyrin repeats; structural protein; 1.26A {} SCOP: k.37.1.1 Length = 93

 Score = 91.6 bits (229), Expect = 1e-24
 Identities = 40/79 (50%), Positives = 50/79 (63%), Gaps = 8/79 (10%)

Query: 72  GVTPLHLAAQGGHLEVMDVLLERGADIDARTKGACGWTPLHTAAKERKKEAVRFLIENGA 131
           G TPLHLAA+ GHLEV+ +LLE GAD++A+ K   G TPLH AA+    E V+ L+E GA
Sbjct: 2   GRTPLHLAARNGHLEVVKLLLEAGADVNAKDKN--GRTPLHLAARNGHLEVVKLLLEAGA 59

Query: 132 FLPDDIN--DSRFNPPLHY 148
               D+N  D     PLH 
Sbjct: 60  ----DVNAKDKNGRTPLHL 74

>1awc_B Protein (GA binding protein beta 1); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: d.211.1.1 Length = 153

 Score =  122 bits (308), Expect = 8e-36
 Identities = 42/116 (36%), Positives = 51/116 (43%), Gaps = 13/116 (11%)

Query: 35  GWTPLHIGARKGDIKLVKQLLDEGMDVNVAAWGPKSKGVTPLHLAAQGGHLEVMDVLLER 94
               L   AR G    V+ L+  G             G +PLHLAAQ GH    +VLL  
Sbjct: 2   LGKKLLEAARAGQDDEVRILMANGAPFTT-----DWLGTSPLHLAAQYGHFSTTEVLLRA 56

Query: 95  GADIDARTKGACGWTPLHTAAKERKKEAVRFLIENGAFLPDDIN--DSRFNPPLHY 148
           G   DARTK     TPLH AA E     V  L+++GA    D+N  D      LH+
Sbjct: 57  GVSRDARTKV--DRTPLHMAASEGHANIVEVLLKHGA----DVNAKDMLKMTALHW 106

>1awc_B Protein (GA binding protein beta 1); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: d.211.1.1 Length = 153

 Score =  121 bits (306), Expect = 2e-35
 Identities = 38/123 (30%), Positives = 59/123 (47%), Gaps = 14/123 (11%)

Query: 29  IDTDDRGWTPLHIGARKGDIKLVKQLLDEGMDVNVAAWGPKSK-GVTPLHLAAQGGHLEV 87
             TD  G +PLH+ A+ G     + LL  G+  +      ++K   TPLH+AA  GH  +
Sbjct: 28  FTTDWLGTSPLHLAAQYGHFSTTEVLLRAGVSRDA-----RTKVDRTPLHMAASEGHANI 82

Query: 88  MDVLLERGADIDARTKGACGWTPLHTAAKERKKEAVRFLIENGAFLPDDIN--DSRFNPP 145
           ++VLL+ GAD++A+       T LH A +   +E V  LI+ GA    D++         
Sbjct: 83  VEVLLKHGADVNAKDM--LKMTALHWATEHNHQEVVELLIKYGA----DVHTQSKFCKTA 136

Query: 146 LHY 148
              
Sbjct: 137 FDI 139

>1awc_B Protein (GA binding protein beta 1); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: d.211.1.1 Length = 153

 Score =  103 bits (259), Expect = 2e-28
 Identities = 28/96 (29%), Positives = 45/96 (46%), Gaps = 8/96 (8%)

Query: 32  DDRGWTPLHIGARKGDIKLVKQLLDEGMDVNVAAWGPKSK-GVTPLHLAAQGGHLEVMDV 90
                TPLH+ A +G   +V+ LL  G DVN      K    +T LH A +  H EV+++
Sbjct: 64  TKVDRTPLHMAASEGHANIVEVLLKHGADVNA-----KDMLKMTALHWATEHNHQEVVEL 118

Query: 91  LLERGADIDARTKGACGWTPLHTAAKERKKEAVRFL 126
           L++ GAD+  ++K     T    +     ++    L
Sbjct: 119 LIKYGADVHTQSKF--CKTAFDISIDNGNEDLAEIL 152

>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A Length = 241

 Score =  124 bits (315), Expect = 1e-35
 Identities = 33/123 (26%), Positives = 56/123 (45%), Gaps = 12/123 (9%)

Query: 32  DDRGWTPLHIGARKGDIKLVKQLLDE----GMDVNVAAWGPKSKGVTPLHLAAQGGHLEV 87
           D+ G TPLHI   +G++  V +L++     G ++++      +   TPLHLA       V
Sbjct: 6   DEDGDTPLHIAVVQGNLPAVHRLVNLFQQGGRELDIYN----NLRQTPLHLAVITTLPSV 61

Query: 88  MDVLLERGADIDARTKGACGWTPLHTAAKERKKEAVRFLIENGAFLPDDIN--DSRFNPP 145
           + +L+  GA   A  +   G T  H A + R    +R L+++ A    D+   +      
Sbjct: 62  VRLLVTAGASPMALDR--HGQTAAHLACEHRSPTCLRALLDSAAPGTLDLEARNYDGLTA 119

Query: 146 LHY 148
           LH 
Sbjct: 120 LHV 122

>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A Length = 241

 Score =  122 bits (308), Expect = 9e-35
 Identities = 31/119 (26%), Positives = 56/119 (47%), Gaps = 11/119 (9%)

Query: 32  DDRGWTPLHIGARKGDIKLVKQLLDEGMDVNVAAWGPKSKGVTPLHLAAQGGHLEVMDVL 91
           +  G T LH+       + V+ LL+ G D++         G +PL  A +   L ++ +L
Sbjct: 113 NYDGLTALHVAVNTECQETVQLLLERGADIDAVD---IKSGRSPLIHAVENNSLSMVQLL 169

Query: 92  LERGADIDARTKGACGWTPLHTAAKERKKEAVRFLIENGAFLPDDIN--DSRFNPPLHY 148
           L+ GA+++A+     G + LH+A+       VR L+ +GA    D +  +   + PL  
Sbjct: 170 LQHGANVNAQMY--SGSSALHSASGRGLLPLVRTLVRSGA----DSSLKNCHNDTPLMV 222

>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A Length = 241

 Score =  113 bits (286), Expect = 2e-31
 Identities = 27/103 (26%), Positives = 41/103 (39%), Gaps = 9/103 (8%)

Query: 30  DTDDRGWTPLHIGARKGDIKLVKQLLDEGMDVNVAAWGPKSK-GVTPLHLAAQGGHLEVM 88
           D    G +PL        + +V+ LL  G +VN      +   G + LH A+  G L ++
Sbjct: 146 DIKS-GRSPLIHAVENNSLSMVQLLLQHGANVNA-----QMYSGSSALHSASGRGLLPLV 199

Query: 89  DVLLERGADIDARTKGACGWTPLHTAAKERKKEAVRFLIENGA 131
             L+  GAD   +       TPL  A   R  + +R      A
Sbjct: 200 RTLVRSGADSSLKNC--HNDTPLMVARSRRVIDILRGKATRPA 240

>2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor, cytoplasm, phosphorylation, P53 binding protein, ANK repeat, SH3 domain; 2.10A {Homo sapiens} Length = 229

 Score =  123 bits (312), Expect = 2e-35
 Identities = 31/131 (23%), Positives = 55/131 (41%), Gaps = 13/131 (9%)

Query: 35  GWTPLHIGARKGDIKLVKQLLDEGMDVNVAAWGPKSKGVTPLHLAAQGGHLEVMDVLLER 94
               L   A  G++++V+Q + E  D +        +G+T LH A  G +  ++D L+  
Sbjct: 21  PLVLLLDAALTGELEVVQQAVKEMNDPSQPN----EEGITALHNAICGANYSIVDFLITA 76

Query: 95  GADIDARTKGACGWTPLHTAAKERKKEAVRFLIENGAFLPDDINDSRFNP---PLHYCPS 151
           GA++++      GWTPLH AA          L+++GA     I  +  +        C  
Sbjct: 77  GANVNSPDSH--GWTPLHCAASCNDTVICMALVQHGA----AIFATTLSDGATAFEKCDP 130

Query: 152 LEWAYEEMMRF 162
               Y +   +
Sbjct: 131 YREGYADCATY 141

>2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor, cytoplasm, phosphorylation, P53 binding protein, ANK repeat, SH3 domain; 2.10A {Homo sapiens} Length = 229

 Score =  105 bits (264), Expect = 2e-28
 Identities = 28/121 (23%), Positives = 43/121 (35%), Gaps = 13/121 (10%)

Query: 32  DDRGWTPLHIGARKGDIKLVKQLLDEGMDVNVAAWGPKSKGVTPLHLAAQGGHLEVMDVL 91
           ++ G T LH      +  +V  L+  G +VN       S G TPLH AA      +   L
Sbjct: 51  NEEGITALHNAICGANYSIVDFLITAGANVNSPD----SHGWTPLHCAASCNDTVICMAL 106

Query: 92  LERGADIDARTKGACGWTPLHTAAKERK--KEAVRFLIENGAFLPDDINDSRFNP--PLH 147
           ++ GA I A T  + G T        R+   +   +L +        +          L 
Sbjct: 107 VQHGAAIFATTL-SDGATAFEKCDPYREGYADCATYLADVEQ----SMGLMNSGAVYALW 161

Query: 148 Y 148
            
Sbjct: 162 D 162

>2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor, cytoplasm, phosphorylation, P53 binding protein, ANK repeat, SH3 domain; 2.10A {Homo sapiens} Length = 229

 Score = 94.6 bits (236), Expect = 3e-24
 Identities = 22/121 (18%), Positives = 34/121 (28%), Gaps = 14/121 (11%)

Query: 32  DDRGWTPLHIGARKGDIKLVKQLLDEGMDVNVAAWGPKSKGVTPLHLAA--QGGHLEVMD 89
           D  GWTPLH  A   D  +   L+  G  +        S G T        + G+ +   
Sbjct: 84  DSHGWTPLHCAASCNDTVICMALVQHGAAIFATT---LSDGATAFEKCDPYREGYADCAT 140

Query: 90  VLLERGADIDARTKGACGWTPLHTAAKERKKEAVRFLIENGAFLPDDIN--DSRFNPPLH 147
            L +    +     G      L   + E   E + F           +   D        
Sbjct: 141 YLADVEQSMGLMNSG--AVYALWDYSAEFGDE-LSFREGESV----TVLRRDGPEETDWW 193

Query: 148 Y 148
           +
Sbjct: 194 W 194

>2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor, cytoplasm, phosphorylation, P53 binding protein, ANK repeat, SH3 domain; 2.10A {Homo sapiens} Length = 229

 Score = 76.5 bits (189), Expect = 2e-17
 Identities = 16/95 (16%), Positives = 25/95 (26%), Gaps = 9/95 (9%)

Query: 31  TDDRGWTPLHI--GARKGDIKLVKQLLDEGMDVNVAAWGPKSKGVTPLHLAAQGGHLEVM 88
           T   G T        R+G       L D    + +      S  V  L   +     E+ 
Sbjct: 117 TLSDGATAFEKCDPYREGYADCATYLADVEQSMGLM----NSGAVYALWDYSAEFGDEL- 171

Query: 89  DVLLERGADIDARTKGACGWTPLHTAAKERKKEAV 123
                 G  +    +     T    AA   ++  V
Sbjct: 172 --SFREGESVTVLRRDGPEETDWWWAALHGQEGYV 204

>2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor, cytoplasm, phosphorylation, P53 binding protein, ANK repeat, SH3 domain; 2.10A {Homo sapiens} Length = 229

 Score = 53.0 bits (128), Expect = 6e-09
 Identities = 9/62 (14%), Positives = 18/62 (29%), Gaps = 7/62 (11%)

Query: 91  LLERGADIDARTKGAC-GWTPLHTAAKERKKEAVRFLIENGAFLPDDIN--DSRFNPPLH 147
           +L +        +        L  AA   + E V+  ++       D +  +      LH
Sbjct: 4   VLRKAGSPRKARRARLNPLVLLLDAALTGELEVVQQAVKEMN----DPSQPNEEGITALH 59

Query: 148 YC 149
             
Sbjct: 60  NA 61

>2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor, cytoplasm, phosphorylation, P53 binding protein, ANK repeat, SH3 domain; 2.10A {Homo sapiens} Length = 229

 Score = 45.7 bits (109), Expect = 2e-06
 Identities = 10/59 (16%), Positives = 15/59 (25%), Gaps = 7/59 (11%)

Query: 30  DTDDRGWTPLHIGARKGDIKLVKQLLDEGMDVNVAAWGPKSK-GVTPLHLAAQGGHLEV 87
             +      L   + +   +L      EG  V V     +     T    AA  G    
Sbjct: 151 LMNSGAVYALWDYSAEFGDEL---SFREGESVTVLR---RDGPEETDWWWAALHGQEGY 203

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score =  128 bits (324), Expect = 2e-35
 Identities = 44/119 (36%), Positives = 67/119 (56%), Gaps = 12/119 (10%)

Query: 32  DDRGWTPLHIGARKGDIKLVKQLLDEGMDVNVAAWGPKSKGVTPLHLAAQGGHLEVMDVL 91
             +G TPLH+ A++G  ++V  LL +  + N+        G+TPLHL AQ GH+ V DVL
Sbjct: 242 SVQGVTPLHLAAQEGHAEMVALLLSKQANGNLGN----KSGLTPLHLVAQEGHVPVADVL 297

Query: 92  LERGADIDARTKGACGWTPLHTAAKERKKEAVRFLIENGAFLPDDIN--DSRFNPPLHY 148
           ++ G  +DA T+   G+TPLH A+     + V+FL+++ A    D+N        PLH 
Sbjct: 298 IKHGVMVDATTRM--GYTPLHVASHYGNIKLVKFLLQHQA----DVNAKTKLGYSPLHQ 350

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score =  127 bits (323), Expect = 2e-35
 Identities = 45/119 (37%), Positives = 57/119 (47%), Gaps = 12/119 (10%)

Query: 32  DDRGWTPLHIGARKGDIKLVKQLLDEGMDVNVAAWGPKSKGVTPLHLAAQGGHLEVMDVL 91
                TPLH  AR G   +VK LL+   + N+A     + G TPLH+AA+ GH+E +  L
Sbjct: 77  AKDDQTPLHCAARIGHTNMVKLLLENNANPNLAT----TAGHTPLHIAAREGHVETVLAL 132

Query: 92  LERGADIDARTKGACGWTPLHTAAKERKKEAVRFLIENGAFLPDDIN--DSRFNPPLHY 148
           LE+ A     TK   G+TPLH AAK  K      L+E  A      N        PLH 
Sbjct: 133 LEKEASQACMTKK--GFTPLHVAAKYGKVRVAELLLERDA----HPNAAGKNGLTPLHV 185

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score =  127 bits (321), Expect = 6e-35
 Identities = 44/120 (36%), Positives = 62/120 (51%), Gaps = 12/120 (10%)

Query: 31  TDDRGWTPLHIGARKGDIKLVKQLLDEGMDVNVAAWGPKSKGVTPLHLAAQGGHLEVMDV 90
             + G TPLH+ +  G + +VK LL  G   NV+      K  TPLH+AA+ GH EV   
Sbjct: 10  GGESGLTPLHVASFMGHLPIVKNLLQRGASPNVS----NVKVETPLHMAARAGHTEVAKY 65

Query: 91  LLERGADIDARTKGACGWTPLHTAAKERKKEAVRFLIENGAFLPDDIN--DSRFNPPLHY 148
           LL+  A ++A+ K     TPLH AA+      V+ L+EN A    + N   +  + PLH 
Sbjct: 66  LLQNKAKVNAKAKD--DQTPLHCAARIGHTNMVKLLLENNA----NPNLATTAGHTPLHI 119

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score =  125 bits (317), Expect = 2e-34
 Identities = 40/119 (33%), Positives = 55/119 (46%), Gaps = 12/119 (10%)

Query: 32  DDRGWTPLHIGARKGDIKLVKQLLDEGMDVNVAAWGPKSKGVTPLHLAAQGGHLEVMDVL 91
              G TPLH+     ++ +VK LL  G   +  A      G TPLH+AA+   +EV   L
Sbjct: 176 GKNGLTPLHVAVHHNNLDIVKLLLPRGGSPHSPA----WNGYTPLHIAAKQNQVEVARSL 231

Query: 92  LERGADIDARTKGACGWTPLHTAAKERKKEAVRFLIENGAFLPDDIN--DSRFNPPLHY 148
           L+ G   +A +    G TPLH AA+E   E V  L+   A    + N  +     PLH 
Sbjct: 232 LQYGGSANAESV--QGVTPLHLAAQEGHAEMVALLLSKQA----NGNLGNKSGLTPLHL 284

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score =  125 bits (316), Expect = 2e-34
 Identities = 41/120 (34%), Positives = 56/120 (46%), Gaps = 12/120 (10%)

Query: 31  TDDRGWTPLHIGARKGDIKLVKQLLDEGMDVNVAAWGPKSKGVTPLHLAAQGGHLEVMDV 90
               G TPLHI AR+G ++ V  LL++             KG TPLH+AA+ G + V ++
Sbjct: 109 ATTAGHTPLHIAAREGHVETVLALLEKEASQACMT----KKGFTPLHVAAKYGKVRVAEL 164

Query: 91  LLERGADIDARTKGACGWTPLHTAAKERKKEAVRFLIENGAFLPDDIN--DSRFNPPLHY 148
           LLER A  +A  K   G TPLH A      + V+ L+  G       +        PLH 
Sbjct: 165 LLERDAHPNAAGKN--GLTPLHVAVHHNNLDIVKLLLPRGG----SPHSPAWNGYTPLHI 218

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score =  124 bits (315), Expect = 4e-34
 Identities = 41/120 (34%), Positives = 60/120 (50%), Gaps = 12/120 (10%)

Query: 31  TDDRGWTPLHIGARKGDIKLVKQLLDEGMDVNVAAWGPKSKGVTPLHLAAQGGHLEVMDV 90
               G+TPLHI A++  +++ + LL  G   N        +GVTPLHLAAQ GH E++ +
Sbjct: 208 PAWNGYTPLHIAAKQNQVEVARSLLQYGGSANA----ESVQGVTPLHLAAQEGHAEMVAL 263

Query: 91  LLERGADIDARTKGACGWTPLHTAAKERKKEAVRFLIENGAFLPDDIN--DSRFNPPLHY 148
           LL + A+ +   K   G TPLH  A+E        LI++G      ++        PLH 
Sbjct: 264 LLSKQANGNLGNKS--GLTPLHLVAQEGHVPVADVLIKHGV----MVDATTRMGYTPLHV 317

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score =  111 bits (279), Expect = 5e-29
 Identities = 38/102 (37%), Positives = 52/102 (50%), Gaps = 8/102 (7%)

Query: 31  TDDRGWTPLHIGARKGDIKLVKQLLDEGMDVNVAAWGPKSK-GVTPLHLAAQGGHLEVMD 89
           T   G+TPLH+ +  G+IKLVK LL    DVN      K+K G +PLH AAQ GH +++ 
Sbjct: 307 TTRMGYTPLHVASHYGNIKLVKFLLQHQADVNA-----KTKLGYSPLHQAAQQGHTDIVT 361

Query: 90  VLLERGADIDARTKGACGWTPLHTAAKERKKEAVRFLIENGA 131
           +LL+ GA  +  +    G TPL  A +         L     
Sbjct: 362 LLLKNGASPNEVSS--DGTTPLAIAKRLGYISVTDVLKVVTD 401

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score = 86.0 bits (214), Expect = 6e-20
 Identities = 25/104 (24%), Positives = 42/104 (40%), Gaps = 18/104 (17%)

Query: 31  TDDRGWTPLHIGARKGDIKLVKQLLDEGMDVNVAAWGPKSKGVTPLHLAAQGGHLEVMDV 90
               G++PLH  A++G   +V  LL  G   N  +    S G TPL +A + G++ V DV
Sbjct: 340 KTKLGYSPLHQAAQQGHTDIVTLLLKNGASPNEVS----SDGTTPLAIAKRLGYISVTDV 395

Query: 91  L---LERGADIDARTKGACGWTPLHTAAKERKKEAVRFLIENGA 131
           L    +  + +    K     +   T         V  +++   
Sbjct: 396 LKVVTDETSFVLVSDK--HRMSFPET---------VDEILDVSE 428

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score = 58.7 bits (143), Expect = 2e-10
 Identities = 15/57 (26%), Positives = 22/57 (38%), Gaps = 8/57 (14%)

Query: 94  RGADIDARTKGACGWTPLHTAAKERKKEAVRFLIENGAFLPDDIN--DSRFNPPLHY 148
            G       +   G TPLH A+       V+ L++ GA      N  + +   PLH 
Sbjct: 3   PGISGGGGGES--GLTPLHVASFMGHLPIVKNLLQRGA----SPNVSNVKVETPLHM 53

>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A Length = 223

 Score =  122 bits (310), Expect = 4e-35
 Identities = 32/120 (26%), Positives = 52/120 (43%), Gaps = 14/120 (11%)

Query: 32  DDRGWTPLHIGARKGDIKLVKQLLDEGMDVNVAAWGPKSK-GVTPLHLAAQGGHLEVMDV 90
              G TPL + AR     +++ L++   DVN          G + LH AA   +++   V
Sbjct: 89  MHDGTTPLILAARLAVEGMLEDLINSHADVNA-----VDDLGKSALHWAAAVNNVDAAVV 143

Query: 91  LLERGADIDARTKGACGWTPLHTAAKERKKEAVRFLIENGAFLPDDIN--DSRFNPPLHY 148
           LL+ GA+ D +       TPL  AA+E   E  + L+++ A    + +  D     P   
Sbjct: 144 LLKNGANKDMQNN--REETPLFLAAREGSYETAKVLLDHFA----NRDITDHMDRLPRDI 197

>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A Length = 223

 Score =  116 bits (294), Expect = 8e-33
 Identities = 40/121 (33%), Positives = 54/121 (44%), Gaps = 13/121 (10%)

Query: 31  TDDRGWTPLHIGARKGDIKLVKQLLDEGMDVNVAAWGPKSKGVTPLHLAAQGGHLEVMDV 90
           TD  G T LH+ AR       K+LL+   D N+      + G TPLH A       V  +
Sbjct: 21  TDRTGETALHLAARYSRSDAAKRLLEASADANIQD----NMGRTPLHAAVSADAQGVFQI 76

Query: 91  LLERGA-DIDARTKGACGWTPLHTAAKERKKEAVRFLIENGAFLPDDIN--DSRFNPPLH 147
           L+   A D+DAR     G TPL  AA+   +  +  LI + A    D+N  D      LH
Sbjct: 77  LIRNRATDLDARMH--DGTTPLILAARLAVEGMLEDLINSHA----DVNAVDDLGKSALH 130

Query: 148 Y 148
           +
Sbjct: 131 W 131

>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A Length = 223

 Score =  115 bits (291), Expect = 3e-32
 Identities = 31/116 (26%), Positives = 45/116 (38%), Gaps = 15/116 (12%)

Query: 32  DDRGWTPLHIGARKGDIKLVKQLLDEGMDVNVAAWGPKSKGVTPLHLAAQGGHLEVMDVL 91
           DD G + LH  A   ++     LL  G + ++      ++  TPL LAA+ G  E   VL
Sbjct: 122 DDLGKSALHWAAAVNNVDAAVVLLKNGANKDMQN----NREETPLFLAAREGSYETAKVL 177

Query: 92  LERGADIDARTKGACGWTPLHTAAKERKKEAVRFLIENGAFLPDDINDSRFNPPLH 147
           L+  A+ D          P   A +    + VR L E              +P LH
Sbjct: 178 LDHFANRDITDH--MDRLPRDIAQERMHHDIVRLLDEYNLVR---------SPQLH 222

>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A Length = 223

 Score = 96.7 bits (242), Expect = 4e-25
 Identities = 28/107 (26%), Positives = 43/107 (40%), Gaps = 13/107 (12%)

Query: 46  GDIK-LVKQLLDEGMDVNVAAWGPKSK-GVTPLHLAAQGGHLEVMDVLLERGADIDARTK 103
           GD   ++   + +G  ++        + G T LHLAA+    +    LLE  AD + +  
Sbjct: 1   GDAPAVISDFIYQGASLHNQ----TDRTGETALHLAARYSRSDAAKRLLEASADANIQDN 56

Query: 104 GACGWTPLHTAAKERKKEAVRFLIENGAFLPDDIN--DSRFNPPLHY 148
              G TPLH A     +   + LI N A    D++        PL  
Sbjct: 57  --MGRTPLHAAVSADAQGVFQILIRNRA---TDLDARMHDGTTPLIL 98

>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens} Length = 240

 Score =  123 bits (311), Expect = 4e-35
 Identities = 35/119 (29%), Positives = 50/119 (42%), Gaps = 11/119 (9%)

Query: 32  DDRGWTPLHIGARKGDIKLVKQLLDEGMDVNVAAWGPKSKGVTPLHLAAQGGHLEVMDVL 91
           D    T LH  A    I LVK  + +G  V+           TPLH A + GHL ++  L
Sbjct: 39  DKENVTLLHWAAINNRIDLVKYYISKGAIVDQLG---GDLNSTPLHWATRQGHLSMVVQL 95

Query: 92  LERGADIDARTKGACGWTPLHTAAKERKKEAVRFLIENGAFLPDDIN--DSRFNPPLHY 148
           ++ GAD         G + +H AA+      V +LI  G     D++  D     PL +
Sbjct: 96  MKYGADPSLIDGE--GCSCIHLAAQFGHTSIVAYLIAKGQ----DVDMMDQNGMTPLMW 148

>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens} Length = 240

 Score =  122 bits (309), Expect = 7e-35
 Identities = 28/120 (23%), Positives = 49/120 (40%), Gaps = 11/120 (9%)

Query: 31  TDDRGWTPLHIGARKGDIKLVKQLLDEGMDVNVAAWGPKSKGVTPLHLAAQGGHLEVMDV 90
            DD     +    + G  +  ++L++ G DV         + VT LH AA    ++++  
Sbjct: 5   IDDYSTWDIVKATQYGIYERCRELVEAGYDVRQP----DKENVTLLHWAAINNRIDLVKY 60

Query: 91  LLERGADIDARTKGACGWTPLHTAAKERKKEAVRFLIENGAFLPDDIN--DSRFNPPLHY 148
            + +GA +D         TPLH A ++     V  L++ GA    D +  D      +H 
Sbjct: 61  YISKGAIVDQLGG-DLNSTPLHWATRQGHLSMVVQLMKYGA----DPSLIDGEGCSCIHL 115

>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens} Length = 240

 Score =  114 bits (289), Expect = 6e-32
 Identities = 29/102 (28%), Positives = 43/102 (42%), Gaps = 6/102 (5%)

Query: 31  TDDRGWTPLHIGARKGDIK-LVKQLLDEGMDVNVAAWGPKSKGVTPLHLAAQGGHLEVMD 89
            D  G TPL   A +       + LL   + VN+     K    T LH A   G+  V+ 
Sbjct: 138 MDQNGMTPLMWAAYRTHSVDPTRLLLTFNVSVNLGD---KYHKNTALHWAVLAGNTTVIS 194

Query: 90  VLLERGADIDARTKGACGWTPLHTAAKERKKEAVRFLIENGA 131
           +LLE GA++DA+     G + L  A + +    +  L E   
Sbjct: 195 LLLEAGANVDAQNIK--GESALDLAKQRKNVWMINHLQEARQ 234

>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens} Length = 240

 Score = 74.0 bits (183), Expect = 2e-16
 Identities = 16/70 (22%), Positives = 28/70 (40%), Gaps = 4/70 (5%)

Query: 31  TDDRGWTPLHIGARKGDIKLVKQLLDEGMDVNVAAWGPKSKGVTPLHLAAQGGHLEVMDV 90
                 T LH     G+  ++  LL+ G +V+        KG + L LA Q  ++ +++ 
Sbjct: 173 DKYHKNTALHWAVLAGNTTVISLLLEAGANVDAQN----IKGESALDLAKQRKNVWMINH 228

Query: 91  LLERGADIDA 100
           L E       
Sbjct: 229 LQEARQAKGY 238

>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A* Length = 237

 Score =  122 bits (310), Expect = 5e-35
 Identities = 35/119 (29%), Positives = 56/119 (47%), Gaps = 11/119 (9%)

Query: 32  DDRGWTPLHIGARKGDIKLVKQLLDEGMDVNVAAWGPKSKGVTPLHLAAQGGHLEVMDVL 91
                +PLH  A  G + +   L+  G +++  +        TPL  AA+  HLE +  L
Sbjct: 8   HQNKRSPLHAAAEAGHVDICHMLVQAGANIDTCS----EDQRTPLMEAAENNHLEAVKYL 63

Query: 92  LERGADIDARTKGACGWTPLHTAAKERKKEAVRFLIENGAFLPDDIN--DSRFNPPLHY 148
           ++ GA +D +     G T LH AAK+   E V++L+ NG     D+N  D     P+ +
Sbjct: 64  IKAGALVDPKDA--EGSTCLHLAAKKGHYEVVQYLLSNGQ---MDVNCQDDGGWTPMIW 117

>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A* Length = 237

 Score =  118 bits (299), Expect = 2e-33
 Identities = 36/120 (30%), Positives = 57/120 (47%), Gaps = 13/120 (10%)

Query: 32  DDRGWTPLHIGARKGDIKLVKQLLDEG-MDVNVAAWGPKSKGVTPLHLAAQGGHLEVMDV 90
           D  G T LH+ A+KG  ++V+ LL  G MDVN         G TP+  A +  H++++ +
Sbjct: 74  DAEGSTCLHLAAKKGHYEVVQYLLSNGQMDVNCQD----DGGWTPMIWATEYKHVDLVKL 129

Query: 91  LLERGADIDARTKGACGWTPLHTAAKERKKEAVRFLIENGAFLPDDIN--DSRFNPPLHY 148
           LL +G+DI+ R         LH AA     +    L+        D++  +   + PLH 
Sbjct: 130 LLSKGSDINIRDN--EENICLHWAAFSGCVDIAEILLAAKC----DLHAVNIHGDSPLHI 183

>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A* Length = 237

 Score =  111 bits (281), Expect = 1e-30
 Identities = 23/100 (23%), Positives = 43/100 (43%), Gaps = 6/100 (6%)

Query: 32  DDRGWTPLHIGARKGDIKLVKQLLDEGMDVNVAAWGPKSKGVTPLHLAAQGGHLEVMDVL 91
           D+     LH  A  G + + + LL    D++         G +PLH+AA+    + + + 
Sbjct: 141 DNEENICLHWAAFSGCVDIAEILLAAKCDLHAVN----IHGDSPLHIAARENRYDCVVLF 196

Query: 92  LERGADIDARTKGACGWTPLHTAAKERKKEAVRFLIENGA 131
           L R +D+  + K   G TPL  A+   +  +   + +   
Sbjct: 197 LSRDSDVTLKNKE--GETPLQCASLNSQVWSALQMSKALQ 234

>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A* Length = 237

 Score = 76.3 bits (189), Expect = 3e-17
 Identities = 19/67 (28%), Positives = 28/67 (41%), Gaps = 6/67 (8%)

Query: 32  DDRGWTPLHIGARKGDIKLVKQLLDEGMDVNVAAWGPKSK-GVTPLHLAAQGGHLEVMDV 90
           +  G +PLHI AR+     V   L    DV +     K+K G TPL  A+    +     
Sbjct: 174 NIHGDSPLHIAARENRYDCVVLFLSRDSDVTL-----KNKEGETPLQCASLNSQVWSALQ 228

Query: 91  LLERGAD 97
           + +   D
Sbjct: 229 MSKALQD 235

>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A* Length = 237

 Score = 48.9 bits (118), Expect = 2e-07
 Identities = 11/55 (20%), Positives = 20/55 (36%), Gaps = 8/55 (14%)

Query: 96  ADIDARTKGACGWTPLHTAAKERKKEAVRFLIENGAFLPDDIN--DSRFNPPLHY 148
            +     +     +PLH AA+    +    L++ GA    +I+        PL  
Sbjct: 2   MNFKMEHQN--KRSPLHAAAEAGHVDICHMLVQAGA----NIDTCSEDQRTPLME 50

>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C* Length = 169

 Score =  120 bits (304), Expect = 6e-35
 Identities = 47/116 (40%), Positives = 59/116 (50%), Gaps = 12/116 (10%)

Query: 35  GWTPLHIGARKGDIKLVKQLLDEGMDVNVAAWGPKSKGVTPLHLAAQGGHLEVMDVLLER 94
               L   AR G    V+ L+  G DVN         G TPLHLAA  GHLE+++VLL+ 
Sbjct: 14  LGKKLLEAARAGRDDEVRILMANGADVNAEDA----SGWTPLHLAAFNGHLEIVEVLLKN 69

Query: 95  GADIDARTKGACGWTPLHTAAKERKKEAVRFLIENGAFLPDDIN--DSRFNPPLHY 148
           GAD++A      G TPL  AA     E V  L++NGA    D+N  D   + PLH 
Sbjct: 70  GADVNAVDHA--GMTPLRLAALFGHLEIVEVLLKNGA----DVNANDMEGHTPLHL 119

>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C* Length = 169

 Score =  120 bits (304), Expect = 7e-35
 Identities = 50/120 (41%), Positives = 65/120 (54%), Gaps = 12/120 (10%)

Query: 31  TDDRGWTPLHIGARKGDIKLVKQLLDEGMDVNVAAWGPKSKGVTPLHLAAQGGHLEVMDV 90
            D  GWTPLH+ A  G +++V+ LL  G DVN         G+TPL LAA  GHLE+++V
Sbjct: 43  EDASGWTPLHLAAFNGHLEIVEVLLKNGADVNAVD----HAGMTPLRLAALFGHLEIVEV 98

Query: 91  LLERGADIDARTKGACGWTPLHTAAKERKKEAVRFLIENGAFLPDDIN--DSRFNPPLHY 148
           LL+ GAD++A      G TPLH AA     E V  L++NGA    D+N  D         
Sbjct: 99  LLKNGADVNANDME--GHTPLHLAAMFGHLEIVEVLLKNGA----DVNAQDKFGKTAFDI 152

>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C* Length = 169

 Score =  110 bits (278), Expect = 5e-31
 Identities = 37/98 (37%), Positives = 53/98 (54%), Gaps = 8/98 (8%)

Query: 32  DDRGWTPLHIGARKGDIKLVKQLLDEGMDVNVAAWGPKSK-GVTPLHLAAQGGHLEVMDV 90
           D  G TPL + A  G +++V+ LL  G DVN          G TPLHLAA  GHLE+++V
Sbjct: 77  DHAGMTPLRLAALFGHLEIVEVLLKNGADVNA-----NDMEGHTPLHLAAMFGHLEIVEV 131

Query: 91  LLERGADIDARTKGACGWTPLHTAAKERKKEAVRFLIE 128
           LL+ GAD++A+ K   G T    +     ++    L +
Sbjct: 132 LLKNGADVNAQDK--FGKTAFDISIDNGNEDLAEILQK 167

>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C* Length = 169

 Score = 55.1 bits (134), Expect = 6e-10
 Identities = 18/57 (31%), Positives = 26/57 (45%), Gaps = 7/57 (12%)

Query: 94  RGADIDARTKGACGWTPLHTAAKERKKEAVRFLIENGAFLPDDIN--DSRFNPPLHY 148
           RG+       G+     L  AA+  + + VR L+ NGA    D+N  D+    PLH 
Sbjct: 2   RGSHHHHH-HGSDLGKKLLEAARAGRDDEVRILMANGA----DVNAEDASGWTPLHL 53

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1 Length = 285

 Score =  123 bits (312), Expect = 7e-35
 Identities = 34/116 (29%), Positives = 50/116 (43%), Gaps = 11/116 (9%)

Query: 35  GWTPLHIGARKGDIKLVKQLLDEGMDVNVAAWGPKSKGVTPLHLAAQGGHLEVMDVLLER 94
               L    +  D+ LV+QLL+ G +VN      +  G TPLH A Q    +++++LL  
Sbjct: 5   DNHLLIKAVQNEDVDLVQQLLEGGANVNFQE---EEGGWTPLHNAVQMSREDIVELLLRH 61

Query: 95  GADIDARTKGACGWTPLHTAAKERKKEAVRFLIENGAFLPDDIN--DSRFNPPLHY 148
           GAD   R K   G TP   AA     + ++  +  GA    D+N  D         
Sbjct: 62  GADPVLRKKN--GATPFLLAAIAGSVKLLKLFLSKGA----DVNECDFYGFTAFME 111

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1 Length = 285

 Score =  120 bits (303), Expect = 1e-33
 Identities = 36/130 (27%), Positives = 57/130 (43%), Gaps = 22/130 (16%)

Query: 31  TDDRGWTPLHIGARKGDIKLVKQLLDEGMDVNVAAWGPKSKGVTPLHLAAQGGHLEVMDV 90
            ++ GWTPLH   +     +V+ LL  G D  +     K  G TP  LAA  G ++++ +
Sbjct: 35  EEEGGWTPLHNAVQMSREDIVELLLRHGADPVLR----KKNGATPFLLAAIAGSVKLLKL 90

Query: 91  LLERGADIDARTKGACGWTPLHTAAKERKKEAVRFLIENGAFLPDDINDSRFNP------ 144
            L +GAD++       G+T    AA   K +A++FL + GA    ++N  R         
Sbjct: 91  FLSKGADVNECDF--YGFTAFMEAAVYGKVKALKFLYKRGA----NVNLRRKTKEDQERL 144

Query: 145 ------PLHY 148
                  L  
Sbjct: 145 RKGGATALMD 154

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1 Length = 285

 Score =  114 bits (287), Expect = 4e-31
 Identities = 38/129 (29%), Positives = 57/129 (44%), Gaps = 19/129 (14%)

Query: 31  TDDRGWTPLHIGARKGDIKLVKQLLDEGMDVNVAAWGPKSKGVTPLHLAAQGGHLEVMDV 90
               G TP  + A  G +KL+K  L +G DVN         G T    AA  G ++ +  
Sbjct: 68  RKKNGATPFLLAAIAGSVKLLKLFLSKGADVNEC----DFYGFTAFMEAAVYGKVKALKF 123

Query: 91  LLERGADIDARTK--------GACGWTPLHTAAKERKKEAVRFLI-ENGAFLPDDIN--D 139
           L +RGA+++ R K           G T L  AA++   E ++ L+ E GA    D+N  D
Sbjct: 124 LYKRGANVNLRRKTKEDQERLRKGGATALMDAAEKGHVEVLKILLDEMGA----DVNACD 179

Query: 140 SRFNPPLHY 148
           +     L +
Sbjct: 180 NMGRNALIH 188

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1 Length = 285

 Score =  109 bits (275), Expect = 2e-29
 Identities = 32/112 (28%), Positives = 46/112 (41%), Gaps = 15/112 (13%)

Query: 32  DDRGWTPLHIGARKGDIK----LVKQLLDEGMDVNVAAWGPKSKGVTPLHLAAQGGHLEV 87
           D+ G   L       D      +   LLD G DVNV       +G TPL LA +  HL +
Sbjct: 179 DNMGRNALIHALLSSDDSDVEAITHLLLDHGADVNVRG----ERGKTPLILAVEKKHLGL 234

Query: 88  MDVLLER-GADIDARTKGACGWTPLHTAAKERKKEAVRFLIENGAFLPDDIN 138
           +  LLE+   +I+       G T L  A + + K+    L + GA      +
Sbjct: 235 VQRLLEQEHIEINDTDS--DGKTALLLAVELKLKKIAELLCKRGA----STD 280

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1 Length = 285

 Score =  106 bits (266), Expect = 4e-28
 Identities = 37/132 (28%), Positives = 53/132 (40%), Gaps = 20/132 (15%)

Query: 26  RSVIDTDDRGWTPLHIGARKGDIKLVKQLLDE-GMDVNVAAWGPKSK-GVTPLHLAAQGG 83
                    G T L   A KG ++++K LLDE G DVN          G   L  A    
Sbjct: 139 EDQERLRKGGATALMDAAEKGHVEVLKILLDEMGADVNA-----CDNMGRNALIHALLSS 193

Query: 84  H----LEVMDVLLERGADIDARTKGACGWTPLHTAAKERKKEAVRFLIEN-GAFLPDDIN 138
                  +  +LL+ GAD++ R +   G TPL  A +++    V+ L+E        +IN
Sbjct: 194 DDSDVEAITHLLLDHGADVNVRGE--RGKTPLILAVEKKHLGLVQRLLEQEHI----EIN 247

Query: 139 --DSRFNPPLHY 148
             DS     L  
Sbjct: 248 DTDSDGKTALLL 259

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1 Length = 285

 Score = 88.3 bits (220), Expect = 2e-21
 Identities = 21/80 (26%), Positives = 37/80 (46%), Gaps = 7/80 (8%)

Query: 71  KGVTPLHLAAQGGHLEVMDVLLERGADIDARTKGACGWTPLHTAAKERKKEAVRFLIENG 130
           +    L  A Q   ++++  LLE GA+++ + +   GWTPLH A +  +++ V  L+ +G
Sbjct: 4   EDNHLLIKAVQNEDVDLVQQLLEGGANVNFQEE-EGGWTPLHNAVQMSREDIVELLLRHG 62

Query: 131 AFLPDDIN--DSRFNPPLHY 148
           A    D          P   
Sbjct: 63  A----DPVLRKKNGATPFLL 78

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1 Length = 285

 Score = 80.2 bits (199), Expect = 2e-18
 Identities = 23/71 (32%), Positives = 38/71 (53%), Gaps = 5/71 (7%)

Query: 32  DDRGWTPLHIGARKGDIKLVKQLLD-EGMDVNVAAWGPKSKGVTPLHLAAQGGHLEVMDV 90
            +RG TPL +   K  + LV++LL+ E +++N       S G T L LA +    ++ ++
Sbjct: 216 GERGKTPLILAVEKKHLGLVQRLLEQEHIEINDTD----SDGKTALLLAVELKLKKIAEL 271

Query: 91  LLERGADIDAR 101
           L +RGA  D  
Sbjct: 272 LCKRGASTDCG 282

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1 Length = 285

 Score = 42.1 bits (100), Expect = 5e-05
 Identities = 8/32 (25%), Positives = 12/32 (37%)

Query: 31  TDDRGWTPLHIGARKGDIKLVKQLLDEGMDVN 62
           TD  G T L +       K+ + L   G   +
Sbjct: 249 TDSDGKTALLLAVELKLKKIAELLCKRGASTD 280

>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S* Length = 165

 Score =  119 bits (302), Expect = 1e-34
 Identities = 38/122 (31%), Positives = 53/122 (43%), Gaps = 13/122 (10%)

Query: 30  DTDDRGWTPLHIGARKGDIKLVKQLLDEGMDVNVAAWGPKSK-GVTPLHLAAQGGHLEVM 88
             +      L   A+ GD++ VK+L      VN            TPLH AA    + V+
Sbjct: 3   MGNSEADRQLLEAAKAGDVETVKKLCTVQ-SVNCRD---IEGRQSTPLHFAAGYNRVSVV 58

Query: 89  DVLLERGADIDARTKGACGWTPLHTAAKERKKEAVRFLIENGAFLPDDIN--DSRFNPPL 146
           + LL+ GAD+ A+ KG  G  PLH A      E    L+++GA     +N  D     PL
Sbjct: 59  EYLLQHGADVHAKDKG--GLVPLHNACSYGHYEVAELLVKHGA----VVNVADLWKFTPL 112

Query: 147 HY 148
           H 
Sbjct: 113 HE 114

>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S* Length = 165

 Score =  108 bits (273), Expect = 3e-30
 Identities = 31/101 (30%), Positives = 43/101 (42%), Gaps = 9/101 (8%)

Query: 32  DDRGWTPLHIGARKGDIKLVKQLLDEGMDVNVAAWGPKSK-GVTPLHLAAQGGHLEVMDV 90
           D  G  PLH     G  ++ + L+  G  VNV           TPLH AA  G  E+  +
Sbjct: 72  DKGGLVPLHNACSYGHYEVAELLVKHGAVVNV-----ADLWKFTPLHEAAAKGKYEICKL 126

Query: 91  LLERGADIDARTKGACGWTPLHTAAKERKKEAVRFLIENGA 131
           LL+ GAD   + +   G TPL    K+   +    L  + A
Sbjct: 127 LLQHGADPTKKNRD--GNTPLD-LVKDGDTDIQDLLRGDAA 164

>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus} Length = 285

 Score =  123 bits (311), Expect = 1e-34
 Identities = 22/120 (18%), Positives = 44/120 (36%), Gaps = 15/120 (12%)

Query: 32  DDRGWTPLHIGARKGDIKLVKQLLDEGMDVNVAAWGPKSKGVTPLHLAAQGGHLEVMDVL 91
           D  G +  +      +++LV  LL+ G   N+       +   PLH AA     +++ +L
Sbjct: 28  DVHGHSASYYAIADNNVRLVCTLLNAGALKNLL------ENEFPLHQAATLEDTKIVKIL 81

Query: 92  LERGADIDARTKGACGWTPLHTAAKERKKEAVRFLIENGAFLPDDIN---DSRFNPPLHY 148
           L  G D         G T L+ A      + V+  ++        +     + +    ++
Sbjct: 82  LFSGLDDSQFDDK--GNTALYYAVDSGNMQTVKLFVKKNW----RLMFYGKTGWKTSFYH 135

>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus} Length = 285

 Score =  118 bits (299), Expect = 7e-33
 Identities = 18/120 (15%), Positives = 38/120 (31%), Gaps = 13/120 (10%)

Query: 32  DDRGWTPLHIGARKGDIKLVKQLLDEGMDVNVAAWGPKSKGVTPLHLAAQGGHLEVMDVL 91
           DD+G T L+     G+++ VK  + +   +       K+   T  + A     + ++   
Sbjct: 92  DDKGNTALYYAVDSGNMQTVKLFVKKNWRLMFYG---KTGWKTSFYHAVMLNDVSIVSYF 148

Query: 92  LERGADIDARTKGACGWTPLHTAAKERKKEAVRFLIENGAFLPDDIN---DSRFNPPLHY 148
           L                + +H   K    + +  L++         N      F P +  
Sbjct: 149 LSEIPSTFDLAI---LLSCIHITIKNGHVDMMILLLDYMT----STNTNNSLLFIPDIKL 201

>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus} Length = 285

 Score =  115 bits (291), Expect = 1e-31
 Identities = 25/115 (21%), Positives = 44/115 (38%), Gaps = 10/115 (8%)

Query: 35  GWTPLHIGARKGDIKLVKQLLDEGMDVNVAAWGPKSKGVTPLHLAAQGGHLEVMDVLLER 94
              PLH  A   D K+VK LL  G+D +        KG T L+ A   G+++ + + +++
Sbjct: 62  NEFPLHQAATLEDTKIVKILLFSGLDDSQF----DDKGNTALYYAVDSGNMQTVKLFVKK 117

Query: 95  GADIDARTKGACGW-TPLHTAAKERKKEAVRFLIENGAFLPDDINDSRFNPPLHY 148
              +    K   GW T  + A        V + +          + +     +H 
Sbjct: 118 NWRLMFYGK--TGWKTSFYHAVMLNDVSIVSYFLSEIP---STFDLAILLSCIHI 167

>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus} Length = 285

 Score =  111 bits (279), Expect = 5e-30
 Identities = 18/119 (15%), Positives = 40/119 (33%), Gaps = 18/119 (15%)

Query: 32  DDRGW-TPLHIGARKGDIKLVKQLLDEGMDVNVAAWGPKSKGVTPLHLAAQGGHLEVMDV 90
              GW T  +      D+ +V   L E            +  ++ +H+  + GH+++M +
Sbjct: 125 GKTGWKTSFYHAVMLNDVSIVSYFLSEIPSTFD-----LAILLSCIHITIKNGHVDMMIL 179

Query: 91  LLERGADIDARTKGACGWTP-LHTAAKERKKEAVRFLIENGAFLPDDINDSRFNPPLHY 148
           LL+     +        + P +  A   +  E ++ L +       +I           
Sbjct: 180 LLDYMTSTNTNNSL--LFIPDIKLAIDNKDIEMLQALFKYDI----NIYS-----ANLE 227

>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus} Length = 285

 Score =  104 bits (263), Expect = 1e-27
 Identities = 17/124 (13%), Positives = 35/124 (28%), Gaps = 20/124 (16%)

Query: 28  VIDTDDRGWTPLHIGARKGDIKLVKQLLDEGMDVNVAAWGPKSKGVTP-LHLAAQGGHLE 86
                    + +HI  + G + ++  LLD     N       S    P + LA     +E
Sbjct: 154 STFDLAILLSCIHITIKNGHVDMMILLLDYMTSTNTNN----SLLFIPDIKLAIDNKDIE 209

Query: 87  VMDVLLERGADIDARTKGACGWTPLHTAAKERKKEAVRFLIENGAFLPDDIN--DSRFNP 144
           ++  L +   +I          +           E  + +IE       +        + 
Sbjct: 210 MLQALFKYDINIY---------SANLENVLLDDAEIAKMIIEKHV----EYKSDSYTKDL 256

Query: 145 PLHY 148
            +  
Sbjct: 257 DIVK 260

>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus} Length = 285

 Score =  104 bits (263), Expect = 1e-27
 Identities = 26/116 (22%), Positives = 41/116 (35%), Gaps = 17/116 (14%)

Query: 35  GWTPLHIGARKGDIKLVKQLLDEGMDVNVAAWGPKSKGVTPLHLAAQGGHLEVMDVLLER 94
           G     I       K +K  L    D   A       G +  + A    ++ ++  LL  
Sbjct: 1   GMDLSRI--NTWKSKQLKSFL-SSKDTFKAD----VHGHSASYYAIADNNVRLVCTLLNA 53

Query: 95  GADIDARTKGACGWTPLHTAAKERKKEAVRFLIENGAFLPDDIN--DSRFNPPLHY 148
           GA  +          PLH AA     + V+ L+ +G     D +  D + N  L+Y
Sbjct: 54  GALKNLLE----NEFPLHQAATLEDTKIVKILLFSGL----DDSQFDDKGNTALYY 101

>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E Length = 236

 Score =  121 bits (305), Expect = 2e-34
 Identities = 35/122 (28%), Positives = 57/122 (46%), Gaps = 9/122 (7%)

Query: 31  TDDRGWTPLHIGARKGDIKLVKQLLDEGMDVNVAAW--GPKSKGVTPLHLAAQGGHLEVM 88
            D RG TPLH+   +G +  V  L       ++ +        G T LHLA+  G+L ++
Sbjct: 74  RDFRGNTPLHLACEQGCLASVGVLTQSCTTPHLHSILKATNYNGHTCLHLASIHGYLGIV 133

Query: 89  DVLLERGADIDARTKGACGWTPLHTAAKERKKEAVRFLIENGAFLPDDIN--DSRFNPPL 146
           ++L+  GAD++A+     G T LH A   +  + V  L++ GA    D+N    +   P 
Sbjct: 134 ELLVSLGADVNAQEP-CNGRTALHLAVDLQNPDLVSLLLKCGA----DVNRVTYQGYSPY 188

Query: 147 HY 148
             
Sbjct: 189 QL 190

>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E Length = 236

 Score =  117 bits (295), Expect = 8e-33
 Identities = 28/120 (23%), Positives = 48/120 (40%), Gaps = 11/120 (9%)

Query: 31  TDDRGWTPLHIGARKGDIKLVKQLLDEGMDVNVAAWGPKSKGVTPLHLAAQGGHLEVMDV 90
           T+  G T LH+ +  G + +V+ L+  G DVN         G T LHLA    + +++ +
Sbjct: 113 TNYNGHTCLHLASIHGYLGIVELLVSLGADVNAQE---PCNGRTALHLAVDLQNPDLVSL 169

Query: 91  LLERGADIDARTKGACGWTPLHTAAKERKKEAVRFLIENGAFLPDDINDSRFNP--PLHY 148
           LL+ GAD++  T    G++P             + L +       +             Y
Sbjct: 170 LLKCGADVNRVTYQ--GYSPYQLTWGRPSTRIQQQLGQLTL----ENLQMLPESEDEESY 223

>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E Length = 236

 Score =  113 bits (285), Expect = 2e-31
 Identities = 29/125 (23%), Positives = 53/125 (42%), Gaps = 14/125 (11%)

Query: 32  DDRGWTPLHIGARKGD----IKLVKQLLDEGMDVNVAAWGPKSKGVTPLHLAAQGGHLEV 87
            + G + LH+     +    +++++Q+  +   +N       +   TPLHLA      E+
Sbjct: 5   TEDGDSFLHLAIIHEEKALTMEVIRQVKGDLAFLNFQN----NLQQTPLHLAVITNQPEI 60

Query: 88  MDVLLERGADIDARTKGACGWTPLHTAAKERKKEAVRFLIENGA--FLPDDINDSRFN-- 143
            + LL  G D + R     G TPLH A ++    +V  L ++     L   +  + +N  
Sbjct: 61  AEALLGAGCDPELRDF--RGNTPLHLACEQGCLASVGVLTQSCTTPHLHSILKATNYNGH 118

Query: 144 PPLHY 148
             LH 
Sbjct: 119 TCLHL 123

>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E Length = 236

 Score = 79.1 bits (196), Expect = 2e-18
 Identities = 17/89 (19%), Positives = 25/89 (28%), Gaps = 6/89 (6%)

Query: 35  GWTPLHIGARKGDIKLVKQLLDEGMDVNVAAWGPKSKGVTPLHLAAQGGHLEVMDVLLER 94
           G T LH+     +  LV  LL  G DVN        +G +P  L        +   L + 
Sbjct: 151 GRTALHLAVDLQNPDLVSLLLKCGADVNRVT----YQGYSPYQLTWGRPSTRIQQQLGQL 206

Query: 95  GADIDARTKGACGWTPLHTAAKERKKEAV 123
             +                  +    E  
Sbjct: 207 TLENLQMLPE--SEDEESYDTESEFTEFT 233

>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A Length = 228

 Score =  120 bits (304), Expect = 3e-34
 Identities = 38/121 (31%), Positives = 54/121 (44%), Gaps = 11/121 (9%)

Query: 31  TDDRGWTPLHIGARKGDIKLVKQLLDEGMDVNVAAWGPKSK-GVTPLHLAAQGGHLEVMD 89
            DD GWTP HI    G++++VK L D  +  ++      +  GVT LHLA      EV  
Sbjct: 68  PDDSGWTPFHIACSVGNLEVVKSLYDRPLKPDLNK---ITNQGVTCLHLAVGKKWFEVSQ 124

Query: 90  VLLERGADIDARTKGACGWTPLHTAAKERKKEAVRFLIENGAFLPDDIN--DSRFNPPLH 147
            L+E GA +  + K      PLH AA     + +  L   G      +N  D +   PL 
Sbjct: 125 FLIENGASVRIKDK--FNQIPLHRAASVGSLKLIELLCGLGK---SAVNWQDKQGWTPLF 179

Query: 148 Y 148
           +
Sbjct: 180 H 180

>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A Length = 228

 Score =  118 bits (298), Expect = 2e-33
 Identities = 40/121 (33%), Positives = 56/121 (46%), Gaps = 11/121 (9%)

Query: 32  DDRGWTPLHIGARKGDIKLVKQLLDEGMDVNVAAWGPKSKGVTPLHLAAQGGHLEVMDVL 91
           D  G  PLH        ++   LL +  +VN+  +   S G TP H+A   G+LEV+  L
Sbjct: 33  DQDGRIPLHWSVSFQAHEITSFLLSKMENVNLDDYPDDS-GWTPFHIACSVGNLEVVKSL 91

Query: 92  LER--GADIDARTKGACGWTPLHTAAKERKKEAVRFLIENGAFLPDDIN--DSRFNPPLH 147
            +R    D++  T    G T LH A  ++  E  +FLIENGA     +   D     PLH
Sbjct: 92  YDRPLKPDLNKITN--QGVTCLHLAVGKKWFEVSQFLIENGA----SVRIKDKFNQIPLH 145

Query: 148 Y 148
            
Sbjct: 146 R 146

>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A Length = 228

 Score =  113 bits (285), Expect = 2e-31
 Identities = 31/121 (25%), Positives = 55/121 (45%), Gaps = 14/121 (11%)

Query: 32  DDRGWTPLHIGARKGDIKLVKQLLDEGMDVNVAAWGPKSKGVTPLHLAAQGGHLEVMDVL 91
            ++G T LH+   K   ++ + L++ G  V +           PLH AA  G L+++++L
Sbjct: 104 TNQGVTCLHLAVGKKWFEVSQFLIENGASVRIKD----KFNQIPLHRAASVGSLKLIELL 159

Query: 92  LERG-ADIDARTKGACGWTPLHTAAKERKKEAVRFLIEN-GAFLPDDIN--DSRFNPPLH 147
              G + ++ + K   GWTPL  A  E   +A   L+E  GA    + +  D++      
Sbjct: 160 CGLGKSAVNWQDK--QGWTPLFHALAEGHGDAAVLLVEKYGA----EYDLVDNKGAKAED 213

Query: 148 Y 148
            
Sbjct: 214 V 214

>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A Length = 228

 Score =  109 bits (274), Expect = 9e-30
 Identities = 26/120 (21%), Positives = 43/120 (35%), Gaps = 14/120 (11%)

Query: 35  GWTPLHIGARKGDIKLVKQLL-DEGMDVNVAAWGPKSKGVTPLHLAAQGGHLEVMDVLLE 93
              PLH    + +   V++LL  +   +          G  PLH +      E+   LL 
Sbjct: 2   SNYPLHQACMENEFFKVQELLHSKPSLLLQKD----QDGRIPLHWSVSFQAHEITSFLLS 57

Query: 94  RGADIDAR-TKGACGWTPLHTAAKERKKEAVRFLIEN--GAFLPDDIN--DSRFNPPLHY 148
           +  +++        GWTP H A      E V+ L +         D+N   ++    LH 
Sbjct: 58  KMENVNLDDYPDDSGWTPFHIACSVGNLEVVKSLYDRPLKP----DLNKITNQGVTCLHL 113

>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A Length = 228

 Score = 99.1 bits (248), Expect = 6e-26
 Identities = 29/101 (28%), Positives = 42/101 (41%), Gaps = 13/101 (12%)

Query: 32  DDRGWTPLHIGARKGDIKLVKQLLDEGM-DVNVAAWGPKSK-GVTPLHLAAQGGHLEVMD 89
           D     PLH  A  G +KL++ L   G   VN      + K G TPL  A   GH +   
Sbjct: 137 DKFNQIPLHRAASVGSLKLIELLCGLGKSAVNW-----QDKQGWTPLFHALAEGHGDAAV 191

Query: 90  VLLER-GADIDARTKGACGWTPLHTAAKERKKEAVRFLIEN 129
           +L+E+ GA+ D       G      A     ++  +F + N
Sbjct: 192 LLVEKYGAEYDLVDNK--GAKAEDVAL---NEQVKKFFLNN 227

>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin repeat, signaling protein; NMR {Mus musculus} SCOP: i.11.1.1 Length = 136

 Score =  117 bits (296), Expect = 4e-34
 Identities = 29/120 (24%), Positives = 49/120 (40%), Gaps = 14/120 (11%)

Query: 32  DDRGWTPLHIGARKGDIKLVKQLLDEGMDVNVAAWGPKSKGVTPLHLAAQGGHLEVMDVL 91
                  L   A +G ++ V+QLL+ G D N         G  P+ +    G  +V ++L
Sbjct: 9   GGSSDAGLATAAARGQVETVRQLLEAGADPNALN----RFGRRPIQVMMM-GSAQVAELL 63

Query: 92  LERGADIDARTKGACGWT-PLHTAAKERKKEAVRFLIENGAFLPDDIN--DSRFNPPLHY 148
           L  GA+ +         T P+H AA+E   + +  L   GA     ++  D+    P+  
Sbjct: 64  LLHGAEPNCADP--ATLTRPVHDAAREGFLDTLVVLHRAGA----RLDVCDAWGRLPVDL 117

>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin repeat, signaling protein; NMR {Mus musculus} SCOP: i.11.1.1 Length = 136

 Score =  114 bits (287), Expect = 9e-33
 Identities = 24/100 (24%), Positives = 43/100 (43%), Gaps = 6/100 (6%)

Query: 32  DDRGWTPLHIGARKGDIKLVKQLLDEGMDVNVAAWGPKSKGVTPLHLAAQGGHLEVMDVL 91
           +  G  P+ +    G  ++ + LL  G + N A     +    P+H AA+ G L+ + VL
Sbjct: 42  NRFGRRPIQV-MMMGSAQVAELLLLHGAEPNCAD---PATLTRPVHDAAREGFLDTLVVL 97

Query: 92  LERGADIDARTKGACGWTPLHTAAKERKKEAVRFLIENGA 131
              GA +D       G  P+  A ++  ++  R+L     
Sbjct: 98  HRAGARLDVCDAW--GRLPVDLAEEQGHRDIARYLHAATG 135

>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin repeat, signaling protein; NMR {Mus musculus} SCOP: i.11.1.1 Length = 136

 Score = 89.4 bits (223), Expect = 3e-23
 Identities = 20/94 (21%), Positives = 34/94 (36%), Gaps = 14/94 (14%)

Query: 58  GMDVNVAAWGPKSKGVTPLHLAAQGGHLEVMDVLLERGADIDARTKGACGWTPLHTAAKE 117
              +++            L  AA  G +E +  LLE GAD +A  +   G  P+      
Sbjct: 2   SPGIHMLG----GSSDAGLATAAARGQVETVRQLLEAGADPNALNRF--GRRPIQVMMMG 55

Query: 118 RKKEAVRFLIENGAFLPDDIN---DSRFNPPLHY 148
              +    L+ +GA    + N    +    P+H 
Sbjct: 56  S-AQVAELLLLHGA----EPNCADPATLTRPVHD 84

>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin repeat, signaling protein; NMR {Mus musculus} SCOP: i.11.1.1 Length = 136

 Score = 76.7 bits (190), Expect = 2e-18
 Identities = 18/68 (26%), Positives = 29/68 (42%), Gaps = 5/68 (7%)

Query: 31  TDDRGWT-PLHIGARKGDIKLVKQLLDEGMDVNVAAWGPKSKGVTPLHLAAQGGHLEVMD 89
            D    T P+H  AR+G +  +  L   G  ++V      + G  P+ LA + GH ++  
Sbjct: 73  ADPATLTRPVHDAAREGFLDTLVVLHRAGARLDVC----DAWGRLPVDLAEEQGHRDIAR 128

Query: 90  VLLERGAD 97
            L     D
Sbjct: 129 YLHAATGD 136

>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A 1mx2_A 1mx6_A Length = 162

 Score =  118 bits (298), Expect = 4e-34
 Identities = 31/121 (25%), Positives = 57/121 (47%), Gaps = 14/121 (11%)

Query: 31  TDDRGWTPLHIGARKGDIKLVKQLLDEGMDVNVAAWGPKSK-GVTPLHLAAQGGHLEVMD 89
            +  G T L +  + G+ ++ ++LL  G + ++     K + G   +H AA+ G L+ + 
Sbjct: 34  QNGFGRTALQV-MKLGNPEIARRLLLRGANPDL-----KDRTGFAVIHDAARAGFLDTLQ 87

Query: 90  VLLERGADIDARTKGACGWTPLHTAAKERKKEAVRFLIENGAFLPDDIN--DSRFNPPLH 147
            LLE  AD++       G  PLH AAKE     V FL+++ A    ++   + + +    
Sbjct: 88  TLLEFQADVNIEDN--EGNLPLHLAAKEGHLRVVEFLVKHTA---SNVGHRNHKGDTACD 142

Query: 148 Y 148
            
Sbjct: 143 L 143

>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A 1mx2_A 1mx6_A Length = 162

 Score =  116 bits (293), Expect = 2e-33
 Identities = 33/120 (27%), Positives = 57/120 (47%), Gaps = 15/120 (12%)

Query: 32  DDRGWTPLHIGARKGDIKLVKQLLDEGMDVNVAAWGPKSK-GVTPLHLAAQGGHLEVMDV 90
            +     L   A +GD++ +  LL   ++VN      ++  G T L +    G+ E+   
Sbjct: 2   AEPWGNELASAAARGDLEQLTSLLQNNVNVNA-----QNGFGRTALQVMKL-GNPEIARR 55

Query: 91  LLERGADIDARTKGACGWTPLHTAAKERKKEAVRFLIENGAFLPDDIN--DSRFNPPLHY 148
           LL RGA+ D + +   G+  +H AA+    + ++ L+E  A    D+N  D+  N PLH 
Sbjct: 56  LLLRGANPDLKDR--TGFAVIHDAARAGFLDTLQTLLEFQA----DVNIEDNEGNLPLHL 109

>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A 1mx2_A 1mx6_A Length = 162

 Score =  113 bits (285), Expect = 4e-32
 Identities = 33/102 (32%), Positives = 50/102 (49%), Gaps = 9/102 (8%)

Query: 32  DDRGWTPLHIGARKGDIKLVKQLLDEGMDVNVAAWGPKSK-GVTPLHLAAQGGHLEVMDV 90
           D  G+  +H  AR G +  ++ LL+   DVN+     +   G  PLHLAA+ GHL V++ 
Sbjct: 67  DRTGFAVIHDAARAGFLDTLQTLLEFQADVNI-----EDNEGNLPLHLAAKEGHLRVVEF 121

Query: 91  LLERGA-DIDARTKGACGWTPLHTAAKERKKEAVRFLIENGA 131
           L++  A ++  R     G T    A    + E V  +  NGA
Sbjct: 122 LVKHTASNVGHRNH--KGDTACDLARLYGRNEVVSLMQANGA 161

>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system, signal sequence, ankyrin repeat, chromodomain, type I turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2 k.37.1.1 PDB: 3dep_A 1x32_A Length = 183

 Score =  118 bits (299), Expect = 5e-34
 Identities = 42/122 (34%), Positives = 51/122 (41%), Gaps = 12/122 (9%)

Query: 29  IDTDDRGWTPLHIGARKGDIKLVKQLLDEGMDVNVAAWGPKSKGVTPLHLAAQGGHLEVM 88
            D      TP    ARK D + + QLL E  DV+         G T L   A  G  + +
Sbjct: 38  ADVVSEYETPWWTAARKADEQALSQLL-EDRDVDAV----DENGRTALLFVAGLGSDKCV 92

Query: 89  DVLLERGADIDARTKGACGWTPLHTAAKERKKEAVRFLIENGAFLPDDIN--DSRFNPPL 146
            +L E GAD+D R     G T LH AA   + E V  L+E GA    DI   D R    L
Sbjct: 93  RLLAEAGADLDHRDM-RGGLTALHMAAGYVRPEVVEALVELGA----DIEVEDERGLTAL 147

Query: 147 HY 148
             
Sbjct: 148 EL 149

>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system, signal sequence, ankyrin repeat, chromodomain, type I turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2 k.37.1.1 PDB: 3dep_A 1x32_A Length = 183

 Score =  116 bits (293), Expect = 4e-33
 Identities = 32/121 (26%), Positives = 42/121 (34%), Gaps = 17/121 (14%)

Query: 31  TDDRGWTPLHIGARKGDIKLVKQLLDEGMDVNVAAWGPKSKGVTPLHLAAQGGHLEVMDV 90
           T   G     I  + G             DV        S+  TP   AA+    + +  
Sbjct: 10  TAGEGAMEYLIEWKDGHSPSWVPSSYIAADVV-------SEYETPWWTAARKADEQALSQ 62

Query: 91  LLERGADIDARTKGACGWTPLHTAAKERKKEAVRFLIENGAFLPDDIN--DSRFNP-PLH 147
           LLE   D+DA  +   G T L   A     + VR L E GA    D++  D R     LH
Sbjct: 63  LLE-DRDVDAVDEN--GRTALLFVAGLGSDKCVRLLAEAGA----DLDHRDMRGGLTALH 115

Query: 148 Y 148
            
Sbjct: 116 M 116

>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system, signal sequence, ankyrin repeat, chromodomain, type I turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2 k.37.1.1 PDB: 3dep_A 1x32_A Length = 183

 Score =  115 bits (291), Expect = 8e-33
 Identities = 32/107 (29%), Positives = 47/107 (43%), Gaps = 9/107 (8%)

Query: 32  DDRGWTPLHIGARKGDIKLVKQLLDEGMDVNVAAWGPKSKGVTPLHLAAQGGHLEVMDVL 91
           D+ G T L   A  G  K V+ L + G D++         G+T LH+AA     EV++ L
Sbjct: 73  DENGRTALLFVAGLGSDKCVRLLAEAGADLDHRD---MRGGLTALHMAAGYVRPEVVEAL 129

Query: 92  LERGADIDARTKGACGWTPLHTAAKERKKEAVRFLIENGAFLPDDIN 138
           +E GADI+   +   G T L  A +  K       ++ G      I 
Sbjct: 130 VELGADIEVEDER--GLTALELAREILKTTPKGNPMQFGR----RIG 170

>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system, signal sequence, ankyrin repeat, chromodomain, type I turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2 k.37.1.1 PDB: 3dep_A 1x32_A Length = 183

 Score = 74.8 bits (185), Expect = 3e-17
 Identities = 19/100 (19%), Positives = 34/100 (34%), Gaps = 24/100 (24%)

Query: 30  DTDDRGWTPLHIGARKGDIKLVKQLLDEGMDVNVAAWGPKSKGVTPLHLAAQGGHLEVMD 89
           D    G T LH+ A     ++V+ L++ G D+ V       +G+T L LA +        
Sbjct: 106 DMRG-GLTALHMAAGYVRPEVVEALVELGADIEVE----DERGLTALELAREILKTTPKG 160

Query: 90  VLLERGADIDARTKGACGWTPLHTAAKERKKEAVRFLIEN 129
             ++ G  I                     ++ +  L   
Sbjct: 161 NPMQFGRRIGL-------------------EKVINVLEGQ 181

>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A Length = 244

 Score =  119 bits (301), Expect = 1e-33
 Identities = 42/122 (34%), Positives = 51/122 (41%), Gaps = 12/122 (9%)

Query: 29  IDTDDRGWTPLHIGARKGDIKLVKQLLDEGMDVNVAAWGPKSKGVTPLHLAAQGGHLEVM 88
            D      TP    ARK D + + QLL E  DV+         G T L   A  G  + +
Sbjct: 39  ADVVSEYETPWWTAARKADEQALSQLL-EDRDVDAV----DENGRTALLFVAGLGSDKCV 93

Query: 89  DVLLERGADIDARTKGACGWTPLHTAAKERKKEAVRFLIENGAFLPDDIN--DSRFNPPL 146
            +L E GAD+D R     G T LH AA   + E V  L+E GA    DI   D R    L
Sbjct: 94  RLLAEAGADLDHRDM-RGGLTALHMAAGYVRPEVVEALVELGA----DIEVEDERGLTAL 148

Query: 147 HY 148
             
Sbjct: 149 EL 150

>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A Length = 244

 Score =  116 bits (292), Expect = 2e-32
 Identities = 32/107 (29%), Positives = 47/107 (43%), Gaps = 9/107 (8%)

Query: 32  DDRGWTPLHIGARKGDIKLVKQLLDEGMDVNVAAWGPKSKGVTPLHLAAQGGHLEVMDVL 91
           D+ G T L   A  G  K V+ L + G D++         G+T LH+AA     EV++ L
Sbjct: 74  DENGRTALLFVAGLGSDKCVRLLAEAGADLDHRD---MRGGLTALHMAAGYVRPEVVEAL 130

Query: 92  LERGADIDARTKGACGWTPLHTAAKERKKEAVRFLIENGAFLPDDIN 138
           +E GADI+   +   G T L  A +  K       ++ G      I 
Sbjct: 131 VELGADIEVEDER--GLTALELAREILKTTPKGNPMQFGR----RIG 171

>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A Length = 244

 Score =  113 bits (286), Expect = 2e-31
 Identities = 32/121 (26%), Positives = 42/121 (34%), Gaps = 17/121 (14%)

Query: 31  TDDRGWTPLHIGARKGDIKLVKQLLDEGMDVNVAAWGPKSKGVTPLHLAAQGGHLEVMDV 90
           T   G     I  + G             DV        S+  TP   AA+    + +  
Sbjct: 11  TAGEGAMEYLIEWKDGHSPSWVPSSYIAADVV-------SEYETPWWTAARKADEQALSQ 63

Query: 91  LLERGADIDARTKGACGWTPLHTAAKERKKEAVRFLIENGAFLPDDIN--DSRFNP-PLH 147
           LLE   D+DA  +   G T L   A     + VR L E GA    D++  D R     LH
Sbjct: 64  LLE-DRDVDAVDEN--GRTALLFVAGLGSDKCVRLLAEAGA----DLDHRDMRGGLTALH 116

Query: 148 Y 148
            
Sbjct: 117 M 117

>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A Length = 244

 Score = 98.4 bits (246), Expect = 2e-25
 Identities = 22/139 (15%), Positives = 40/139 (28%), Gaps = 29/139 (20%)

Query: 30  DTDDRGWTPLHIGARKGDIKLVKQLLDEGMDVNVAAWGPKSKGVTPLHLAAQGGHLEVMD 89
           D    G T LH+ A     ++V+ L++ G D+ V       +G+T L LA +        
Sbjct: 107 DMRG-GLTALHMAAGYVRPEVVEALVELGADIEVED----ERGLTALELAREILKTTPKG 161

Query: 90  VLLERGADIDARTKGAC--------------------GWTPLHTAAKERKKEAVRFLIEN 129
             ++ G  I                            G    +    +   +       +
Sbjct: 162 NPMQFGRRIGLEKVINVLEGQVFEYAEVDEIVEKRGKGKDVEYLVRWKDGGDCEWVKGVH 221

Query: 130 GAFLPDDINDSRFNPPLHY 148
            A    +     +   L Y
Sbjct: 222 VA----EDVAKDYEDGLEY 236

>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A Length = 244

 Score = 80.3 bits (199), Expect = 9e-19
 Identities = 20/116 (17%), Positives = 35/116 (30%), Gaps = 35/116 (30%)

Query: 35  GWTPLHIGARKGDIKLVKQLLDEGMDVNVAAWGPKSKGVTPLHLAAQGGHLEVMDVLLER 94
           G     IG+R                          +G     +  + GH          
Sbjct: 1   GEVNKIIGSRTAG-----------------------EGAMEYLIEWKDGHSPSWVPSSYI 37

Query: 95  GADIDARTKGACGWTPLHTAAKERKKEAVRFLIENGAFLPDDIN--DSRFNPPLHY 148
            AD+ +        TP  TAA++  ++A+  L+E       D++  D      L +
Sbjct: 38  AADVVSE-----YETPWWTAARKADEQALSQLLE-DR----DVDAVDENGRTALLF 83

>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus} Length = 232

 Score =  118 bits (299), Expect = 2e-33
 Identities = 40/131 (30%), Positives = 57/131 (43%), Gaps = 18/131 (13%)

Query: 32  DDRGWTPLHIGARKGDIKLVKQLLDEGMDVNVAAWGPKSK-GVTPLHLAAQGGHLEVMDV 90
              G T LHI A   +++    L++   ++       +   G T LH+A    ++ ++  
Sbjct: 34  GAMGETALHIAALYDNLEAAMVLMEAAPELVFEPMTSELYEGQTALHIAVINQNVNLVRA 93

Query: 91  LLERGADIDARTKGAC-----------GWTPLHTAAKERKKEAVRFLIENGAFLPDDIN- 138
           LL RGA + AR  G+            G  PL  AA    +E VR LIE+GA    DI  
Sbjct: 94  LLARGASVSARATGSVFHYRPHNLIYYGEHPLSFAACVGSEEIVRLLIEHGA----DIRA 149

Query: 139 -DSRFNPPLHY 148
            DS  N  LH 
Sbjct: 150 QDSLGNTVLHI 160

>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus} Length = 232

 Score =  111 bits (280), Expect = 1e-30
 Identities = 32/138 (23%), Positives = 44/138 (31%), Gaps = 27/138 (19%)

Query: 32  DDRGWTPLHIGARKGDIKLVKQLLDEGMDVN---------VAAWGPKSKGVTPLHLAAQG 82
              G T LHI     ++ LV+ LL  G  V+                  G  PL  AA  
Sbjct: 72  LYEGQTALHIAVINQNVNLVRALLARGASVSARATGSVFHYRPHNLIYYGEHPLSFAACV 131

Query: 83  GHLEVMDVLLERGADIDARTKGACGWTPLHTAAKERKKEAVR----FLIENGAFLPDDIN 138
           G  E++ +L+E GADI A+     G T LH    +  K         L+          +
Sbjct: 132 GSEEIVRLLIEHGADIRAQDS--LGNTVLHILILQPNKTFACQMYNLLLSYDG----GDH 185

Query: 139 DSRFNP--------PLHY 148
                         P   
Sbjct: 186 LKSLELVPNNQGLTPFKL 203

>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus} Length = 232

 Score =  105 bits (265), Expect = 2e-28
 Identities = 30/109 (27%), Positives = 51/109 (46%), Gaps = 14/109 (12%)

Query: 35  GWTPLHIGARKGDIKLVKQLL-DEGMDVNVAAWGPKSK-GVTPLHLAAQGGHLEVMDVLL 92
             +PL + A++ D++ + +LL  EG +V+      +   G T LH+AA   +LE   VL+
Sbjct: 3   WESPLLLAAKENDVQALSKLLKFEGCEVHQ-----RGAMGETALHIAALYDNLEAAMVLM 57

Query: 93  ERGADIDART---KGACGWTPLHTAAKERKKEAVRFLIENGAFLPDDIN 138
           E   ++       +   G T LH A   +    VR L+  GA     ++
Sbjct: 58  EAAPELVFEPMTSELYEGQTALHIAVINQNVNLVRALLARGA----SVS 102

>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus} Length = 232

 Score = 81.5 bits (202), Expect = 3e-19
 Identities = 20/85 (23%), Positives = 31/85 (36%), Gaps = 14/85 (16%)

Query: 72  GVTPLHLAAQGGHLE-VMDVLLERGADIDARTKGACGWTPLHTAAKERKKEAVRFLIENG 130
             +PL LAA+   ++ +  +L   G ++  R     G T LH AA     EA   L+E  
Sbjct: 3   WESPLLLAAKENDVQALSKLLKFEGCEVHQRGA--MGETALHIAALYDNLEAAMVLMEAA 60

Query: 131 AFLPDDINDSRFNP-------PLHY 148
                ++               LH 
Sbjct: 61  P----ELVFEPMTSELYEGQTALHI 81

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus} Length = 351

 Score =  121 bits (305), Expect = 3e-33
 Identities = 32/126 (25%), Positives = 50/126 (39%), Gaps = 15/126 (11%)

Query: 28  VIDTDDRGWTPLHIGARKG---DIKLVKQLLDEGMDVNVAAWGPKSKGVTPLHLAAQGGH 84
                    T LH           ++ + LL +G +VN          +TPLH+AA+  H
Sbjct: 204 NFKQPQSHETALHCAVASLHPKRKQVAELLLRKGANVNEKN----KDFMTPLHVAAERAH 259

Query: 85  LEVMDVLLERGADIDARTKGACGWTPLHTAAKERKKEAVRFLIENGAFLPDDIN--DSRF 142
            +VM+VL + GA ++A      G T LH AA     +  R L+  G+    D +    + 
Sbjct: 260 NDVMEVLHKHGAKMNALDS--LGQTALHRAALAGHLQTCRLLLSYGS----DPSIISLQG 313

Query: 143 NPPLHY 148
                 
Sbjct: 314 FTAAQM 319

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus} Length = 351

 Score =  119 bits (302), Expect = 8e-33
 Identities = 36/125 (28%), Positives = 55/125 (44%), Gaps = 15/125 (12%)

Query: 28  VIDTDDRGWTPLHIGARKGDIK-LVKQLLDEGMDVNVAAWGPKSK-GVTPLHLAAQGGHL 85
            + T +     L   AR G+ + L+  L    ++ +            TPLHLAA    +
Sbjct: 17  AVLTGEYKKDELLEAARSGNEEKLMALLTPLNVNCHA-----SDGRKSTPLHLAAGYNRV 71

Query: 86  EVMDVLLERGADIDARTKGACGWTPLHTAAKERKKEAVRFLIENGAFLPDDIN--DSRFN 143
            ++ +LL+ GAD+ A+ KG  G  PLH A      E    L+++GA     +N  D    
Sbjct: 72  RIVQLLLQHGADVHAKDKG--GLVPLHNACSYGHYEVTELLLKHGA----CVNAMDLWQF 125

Query: 144 PPLHY 148
            PLH 
Sbjct: 126 TPLHE 130

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus} Length = 351

 Score =  113 bits (285), Expect = 2e-30
 Identities = 28/102 (27%), Positives = 40/102 (39%), Gaps = 6/102 (5%)

Query: 32  DDRGWTPLHIGARKGDIKLVKQLLDEGMDVNVAAWGPKSKGVTPLHLAAQGGHLEVMDVL 91
           D  G  PLH     G  ++ + LL  G  VN           TPLH AA    +EV  +L
Sbjct: 88  DKGGLVPLHNACSYGHYEVTELLLKHGACVNAMD----LWQFTPLHEAASKNRVEVCSLL 143

Query: 92  LERGADIDARTKGACGWTPLHTAAKERKKEAVRFLIENGAFL 133
           L  GAD         G + +  A     +E + +  +  + L
Sbjct: 144 LSHGADPTLVNCH--GKSAVDMAPTPELRERLTYEFKGHSLL 183

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus} Length = 351

 Score =  112 bits (283), Expect = 5e-30
 Identities = 29/118 (24%), Positives = 46/118 (38%), Gaps = 15/118 (12%)

Query: 31  TDDRGWTPLHIGARKGDIKLVKQLLDEGMDVNVAAWGPKSKGVTPLHLAAQGGHLEVMDV 90
            +    TPLH+ A +    +++ L   G  +N       S G T LH AA  GHL+   +
Sbjct: 243 KNKDFMTPLHVAAERAHNDVMEVLHKHGAKMNALD----SLGQTALHRAALAGHLQTCRL 298

Query: 91  LLERGADIDARTKGACGWTPLHTAAKERKKEAVRFLIENGAFLPDDINDSRFNPPLHY 148
           LL  G+D    +    G+T           EAV+ ++         +  S  +  L  
Sbjct: 299 LLSYGSDPSIISLQ--GFTAAQMGN-----EAVQQILSEST----PMRTSDVDYRLLE 345

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus} Length = 351

 Score =  110 bits (278), Expect = 2e-29
 Identities = 33/126 (26%), Positives = 55/126 (43%), Gaps = 16/126 (12%)

Query: 28  VIDTDDRGWTPLHIGARKGDIKLVKQLLDEGMDVNVAAWGPKSKGVTPLHLAAQGGH--- 84
            +  + +G + L   AR+ D+  VK+ L   +              T LH A    H   
Sbjct: 172 RLTYEFKGHSLLQA-AREADLAKVKKTLALEIINFKQ----PQSHETALHCAVASLHPKR 226

Query: 85  LEVMDVLLERGADIDARTKGACGWTPLHTAAKERKKEAVRFLIENGAFLPDDIN--DSRF 142
            +V ++LL +GA+++ + K     TPLH AA+    + +  L ++GA     +N  DS  
Sbjct: 227 KQVAELLLRKGANVNEKNKD--FMTPLHVAAERAHNDVMEVLHKHGA----KMNALDSLG 280

Query: 143 NPPLHY 148
              LH 
Sbjct: 281 QTALHR 286

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus} Length = 351

 Score =  103 bits (260), Expect = 9e-27
 Identities = 28/141 (19%), Positives = 48/141 (34%), Gaps = 32/141 (22%)

Query: 32  DDRGWTPLHIGARKGDIKLVKQLLDEGMDVNVAAWGPKSKGVTPLHLAAQGGHLEVMDVL 91
           D   +TPLH  A K  +++   LL  G D  +        G + + +A      E +   
Sbjct: 121 DLWQFTPLHEAASKNRVEVCSLLLSHGADPTLVN----CHGKSAVDMAPTPELRERLTYE 176

Query: 92  LERGADIDARTKGAC-------------------GWTPLHTAAKE---RKKEAVRFLIEN 129
            +  + + A  +                        T LH A      ++K+    L+  
Sbjct: 177 FKGHSLLQAAREADLAKVKKTLALEIINFKQPQSHETALHCAVASLHPKRKQVAELLLRK 236

Query: 130 GAFLPDDIN--DSRFNPPLHY 148
           GA    ++N  +  F  PLH 
Sbjct: 237 GA----NVNEKNKDFMTPLHV 253

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus} Length = 351

 Score = 51.0 bits (123), Expect = 6e-08
 Identities = 13/80 (16%), Positives = 24/80 (30%), Gaps = 22/80 (27%)

Query: 72  GVTPLHLAAQGGHLEVMDVLLERGADIDARTKGACGWTPLHTAAKER-KKEAVRFLIENG 130
           G + L              L +  A      +       L  AA+   +++ +  L    
Sbjct: 4   GKSALD-------------LADPSAKAVLTGE--YKKDELLEAARSGNEEKLMALLTPLN 48

Query: 131 AFLPDDIN--DSRFNPPLHY 148
                + +  D R + PLH 
Sbjct: 49  V----NCHASDGRKSTPLHL 64

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus} Length = 351

 Score = 43.3 bits (103), Expect = 2e-05
 Identities = 10/52 (19%), Positives = 20/52 (38%), Gaps = 11/52 (21%)

Query: 32  DDRGWTPLHIGARKGDIKLVKQLLDEGMDVNVAAWGPKSKGVTPLHLAAQGG 83
             +G+T   +G      + V+Q+L E   +  +           L  A++ G
Sbjct: 310 SLQGFTAAQMGN-----EAVQQILSESTPMRTSD------VDYRLLEASKAG 350

>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1 Length = 299

 Score =  119 bits (301), Expect = 3e-33
 Identities = 33/123 (26%), Positives = 51/123 (41%), Gaps = 12/123 (9%)

Query: 29  IDTDDRGWTPLHIGARKGDIKLVKQLLDEGMDVNVAAWGPKSKGVTPLHLAAQGGHLEVM 88
                            GD + V +LL+ G D+N A       G+T LH A    +++++
Sbjct: 34  TKVKFDDGAVFLAACSSGDTEEVLRLLERGADINYA----NVDGLTALHQACIDDNVDMV 89

Query: 89  DVLLERGADIDARTKGACGWTPLHTAAKERKKEAVRFLIENGAFLPDDIN--DSRFNPPL 146
             L+E GA+I+       GW PLH AA     +   +LI  GA     +   +S  + PL
Sbjct: 90  KFLVENGANINQPDNE--GWIPLHAAASCGYLDIAEYLISQGA----HVGAVNSEGDTPL 143

Query: 147 HYC 149
              
Sbjct: 144 DIA 146

>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1 Length = 299

 Score =  113 bits (285), Expect = 8e-31
 Identities = 30/121 (24%), Positives = 47/121 (38%), Gaps = 14/121 (11%)

Query: 32  DDRGWTPLHIGARKGDIKLVKQLLDEGMDVNVAAWGPKSK-GVTPLHLAAQGGHLEVMDV 90
                       R       + L    ++         +K G T LH+AA  G+ EV+ +
Sbjct: 163 GVDIEAARKEEERIMLRDARQWLNSGHINDV-----RHAKSGGTALHVAAAKGYTEVLKL 217

Query: 91  LLERGADIDARTKGACGWTPLHTAAKERKKEAVRFLIENGAFLPDDIN--DSRFNPPLHY 148
           L++   D++ +     GWTPLH AA   K+EA R L+EN      D+   +         
Sbjct: 218 LIQARYDVNIKDYD--GWTPLHAAAHWGKEEACRILVENLC----DMEAVNKVGQTAFDV 271

Query: 149 C 149
            
Sbjct: 272 A 272

>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1 Length = 299

 Score =  110 bits (278), Expect = 8e-30
 Identities = 30/110 (27%), Positives = 45/110 (40%), Gaps = 10/110 (9%)

Query: 32  DDRGWTPLHIGARKGDIKLVKQLLDEGMDVNVAAWGPKSKGVTPLHLAAQGGHLEVMDVL 91
              G T LH+ A KG  +++K L+    DVN+        G TPLH AA  G  E   +L
Sbjct: 196 AKSGGTALHVAAAKGYTEVLKLLIQARYDVNIKD----YDGWTPLHAAAHWGKEEACRIL 251

Query: 92  LERGADIDARTKGACGWTPLHTAAKERKKEAVRFLIENGAFLPDDINDSR 141
           +E   D++A  K   G T    A ++          +         ++ R
Sbjct: 252 VENLCDMEAVNKV--GQTAFDVADEDILGYLEELQKKQNL----LHSEKR 295

>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1 Length = 299

 Score =  109 bits (276), Expect = 2e-29
 Identities = 31/110 (28%), Positives = 54/110 (49%), Gaps = 9/110 (8%)

Query: 32  DDRGWTPLHIGARKGDIKLVKQLLDEGMDVNVAAWGPKSKGVTPLHLAAQGGHLEVMDVL 91
           +  G T LH      ++ +VK L++ G ++N       ++G  PLH AA  G+L++ + L
Sbjct: 70  NVDGLTALHQACIDDNVDMVKFLVENGANINQPD----NEGWIPLHAAASCGYLDIAEYL 125

Query: 92  LERGADIDARTKGACGWTPLHTAAKERKKEAVRFLIENGAFLPDDINDSR 141
           + +GA + A      G TPL  A +E  +E ++  +        DI  +R
Sbjct: 126 ISQGAHVGAVNSE--GDTPLDIAEEEAMEELLQNEVNRQG---VDIEAAR 170

>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1 Length = 299

 Score =  108 bits (272), Expect = 7e-29
 Identities = 33/119 (27%), Positives = 47/119 (39%), Gaps = 13/119 (10%)

Query: 32  DDRGWTPLHIGARKGDIKLVKQLLDEGMDVNVAAWGPKSKGVTPLHLAAQGGHLEVMDVL 91
           D +      +    G    ++  + +     V     K         A   G  E +  L
Sbjct: 5   DAKQKRNEQLKRWIGSETDLEPPVVKRKKTKV-----KFDDGAVFLAACSSGDTEEVLRL 59

Query: 92  LERGADIDARTKGACGWTPLHTAAKERKKEAVRFLIENGAFLPDDIN--DSRFNPPLHY 148
           LERGADI+       G T LH A  +   + V+FL+ENGA    +IN  D+    PLH 
Sbjct: 60  LERGADINYANVD--GLTALHQACIDDNVDMVKFLVENGA----NINQPDNEGWIPLHA 112

>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1 Length = 299

 Score = 93.7 bits (234), Expect = 2e-23
 Identities = 24/119 (20%), Positives = 42/119 (35%), Gaps = 18/119 (15%)

Query: 32  DDRGWTPLHIGARKGDIKLVKQLLDEGMDVNVAAWGPKSKGVTPLHLAAQGGHLEVMDVL 91
           D+ GW PLH  A  G + + + L+ +G  V        S+G TPL +A +    E++   
Sbjct: 103 DNEGWIPLHAAASCGYLDIAEYLISQGAHVGAV----NSEGDTPLDIAEEEAMEELLQNE 158

Query: 92  LERGADIDARTKGACGWTPLHTAAKERKKEAVRFLIENGAFLPDDIN--DSRFNPPLHY 148
           + R         G           +   ++A ++L         +           LH 
Sbjct: 159 VNRQ--------GVDIEAARKEEERIMLRDARQWLNSGHI----NDVRHAKSGGTALHV 205

>2jab_A H10-2-G3; HER2, darpin, ankyrin repeat protein, membrane protein, human epidermal growth factor receptor 2, de novo protein; 1.70A {} PDB: 3hg0_D 2xzt_G 2xzd_G 2y0b_G 2v4h_C Length = 136

 Score =  115 bits (290), Expect = 4e-33
 Identities = 42/117 (35%), Positives = 58/117 (49%), Gaps = 14/117 (11%)

Query: 35  GWTPLHIGARKGDIKLVKQLLDEGMDVNVAAWGPKSK-GVTPLHLAAQGGHLEVMDVLLE 93
               L   AR G    V+ L+  G DVN      K + G+TPL+LA   GHLE+++VLL+
Sbjct: 14  LGKKLLEAARAGQDDEVRILMANGADVNA-----KDEYGLTPLYLATAHGHLEIVEVLLK 68

Query: 94  RGADIDARTKGACGWTPLHTAAKERKKEAVRFLIENGAFLPDDIN--DSRFNPPLHY 148
            GAD++A      G+TPLH AA     E    L+++GA    D+N  D         
Sbjct: 69  NGADVNAVDA--IGFTPLHLAAFIGHLEIAEVLLKHGA----DVNAQDKFGKTAFDI 119

>2jab_A H10-2-G3; HER2, darpin, ankyrin repeat protein, membrane protein, human epidermal growth factor receptor 2, de novo protein; 1.70A {} PDB: 3hg0_D 2xzt_G 2xzd_G 2y0b_G 2v4h_C Length = 136

 Score =  107 bits (271), Expect = 2e-30
 Identities = 36/98 (36%), Positives = 53/98 (54%), Gaps = 8/98 (8%)

Query: 32  DDRGWTPLHIGARKGDIKLVKQLLDEGMDVNVAAWGPKSK-GVTPLHLAAQGGHLEVMDV 90
           D+ G TPL++    G +++V+ LL  G DVN          G TPLHLAA  GHLE+ +V
Sbjct: 44  DEYGLTPLYLATAHGHLEIVEVLLKNGADVNA-----VDAIGFTPLHLAAFIGHLEIAEV 98

Query: 91  LLERGADIDARTKGACGWTPLHTAAKERKKEAVRFLIE 128
           LL+ GAD++A+ K   G T    +     ++    L +
Sbjct: 99  LLKHGADVNAQDK--FGKTAFDISIGNGNEDLAEILQK 134

>2jab_A H10-2-G3; HER2, darpin, ankyrin repeat protein, membrane protein, human epidermal growth factor receptor 2, de novo protein; 1.70A {} PDB: 3hg0_D 2xzt_G 2xzd_G 2y0b_G 2v4h_C Length = 136

 Score = 53.5 bits (130), Expect = 1e-09
 Identities = 17/57 (29%), Positives = 25/57 (43%), Gaps = 7/57 (12%)

Query: 94  RGADIDARTKGACGWTPLHTAAKERKKEAVRFLIENGAFLPDDIN--DSRFNPPLHY 148
           RG+       G+     L  AA+  + + VR L+ NGA    D+N  D     PL+ 
Sbjct: 2   RGSHHHHH-HGSDLGKKLLEAARAGQDDEVRILMANGA----DVNAKDEYGLTPLYL 53

>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis} Length = 201

 Score =  116 bits (292), Expect = 9e-33
 Identities = 23/119 (19%), Positives = 49/119 (41%), Gaps = 11/119 (9%)

Query: 32  DDRGWTPLHIGARKGDIKLVKQLLDEGMDVNVAAWGPKSKGVTPLHLAAQGGHLEVMDVL 91
                  L    ++   K+ + L D    V+       ++G TPL++A     +E+   L
Sbjct: 3   TYEVGALLEAANQRDTKKVKEILQDTTYQVDEVD----TEGNTPLNIAVHNNDIEIAKAL 58

Query: 92  LERGADIDARTKGACGWTPLHTAAKERKKEAVRFLIENGAFLPDDIN--DSRFNPPLHY 148
           ++RGADI+ +       +P   A  + + E + +++++      D+N  +      L  
Sbjct: 59  IDRGADINLQNS--ISDSPYLYAGAQGRTEILAYMLKHAT---PDLNKHNRYGGNALIP 112

>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis} Length = 201

 Score =  107 bits (270), Expect = 1e-29
 Identities = 31/122 (25%), Positives = 56/122 (45%), Gaps = 14/122 (11%)

Query: 31  TDDRGWTPLHIGARKGDIKLVKQLLDEGMDVNVAAWGPKSK-GVTPLHLAAQGGHLEVMD 89
            D  G TPL+I     DI++ K L+D G D+N+     ++    +P   A   G  E++ 
Sbjct: 35  VDTEGNTPLNIAVHNNDIEIAKALIDRGADINL-----QNSISDSPYLYAGAQGRTEILA 89

Query: 90  VLLERGA-DIDARTKGACGWTPLHTAAKERKKEAVRFLIENGAFLPDDIN--DSRFNPPL 146
            +L+    D++   +   G   L  AA++   + V+ L+E+G    +DI+  +      L
Sbjct: 90  YMLKHATPDLNKHNRY--GGNALIPAAEKGHIDNVKLLLEDGR---EDIDFQNDFGYTAL 144

Query: 147 HY 148
             
Sbjct: 145 IE 146

>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis} Length = 201

 Score =  106 bits (268), Expect = 4e-29
 Identities = 32/127 (25%), Positives = 57/127 (44%), Gaps = 21/127 (16%)

Query: 32  DDRGWTPLHIGARKGDIKLVKQLLDEG-MDVNVAAWGPKSK-GVTPLHLAAQGGHLEVMD 89
           +    +P      +G  +++  +L     D+N       ++ G   L  AA+ GH++ + 
Sbjct: 69  NSISDSPYLYAGAQGRTEILAYMLKHATPDLNK-----HNRYGGNALIPAAEKGHIDNVK 123

Query: 90  VLLERG-ADIDARTKGACGWTPLHTAAKERK-----KEAVRFLIENGAFLPDDIN--DSR 141
           +LLE G  DID +     G+T L  A   R+     ++ V+ L+ENGA    D +  D+ 
Sbjct: 124 LLLEDGREDIDFQND--FGYTALIEAVGLREGNQLYQDIVKLLMENGA----DQSIKDNS 177

Query: 142 FNPPLHY 148
               + Y
Sbjct: 178 GRTAMDY 184

>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis} Length = 201

 Score = 97.5 bits (244), Expect = 1e-25
 Identities = 26/105 (24%), Positives = 45/105 (42%), Gaps = 14/105 (13%)

Query: 31  TDDRGWTPLHIGARKGDIKLVKQLLDEGM-DVNVAAWGPKSK-GVTPLHLAA-----QGG 83
            +  G   L   A KG I  VK LL++G  D++      ++  G T L  A         
Sbjct: 102 HNRYGGNALIPAAEKGHIDNVKLLLEDGREDIDF-----QNDFGYTALIEAVGLREGNQL 156

Query: 84  HLEVMDVLLERGADIDARTKGACGWTPLHTAAKERKKEAVRFLIE 128
           + +++ +L+E GAD   +     G T +  A ++   E  + L +
Sbjct: 157 YQDIVKLLMENGADQSIKDNS--GRTAMDYANQKGYTEISKILAQ 199

>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A Length = 253

 Score =  117 bits (295), Expect = 1e-32
 Identities = 32/121 (26%), Positives = 54/121 (44%), Gaps = 15/121 (12%)

Query: 32  DDRGWTPLHIGARKGDIKLVKQLLDEG-MDVNVAAWGPKSK-GVTPLHLAAQGGHLEVMD 89
           D+ G TPLH         + + L+     D++      +   G TPL LAA+     +++
Sbjct: 87  DNMGRTPLHAAVSADAQGVFQILIRNRATDLDA-----RMHDGTTPLILAARLAVEGMLE 141

Query: 90  VLLERGADIDARTKGACGWTPLHTAAKERKKEAVRFLIENGAFLPDDIN--DSRFNPPLH 147
            L+   AD++A      G + LH AA     +A   L++NGA    + +  ++R   PL 
Sbjct: 142 DLINSHADVNAVDD--LGKSALHWAAAVNNVDAAVVLLKNGA----NKDMQNNREETPLF 195

Query: 148 Y 148
            
Sbjct: 196 L 196

>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A Length = 253

 Score =  116 bits (293), Expect = 2e-32
 Identities = 40/122 (32%), Positives = 54/122 (44%), Gaps = 15/122 (12%)

Query: 31  TDDRGWTPLHIGARKGDIKLVKQLLDEGMDVNVAAWGPKSK-GVTPLHLAAQGGHLEVMD 89
           TD  G T LH+ AR       K+LL+   D N+     +   G TPLH A       V  
Sbjct: 53  TDRTGETALHLAARYSRSDAAKRLLEASADANI-----QDNMGRTPLHAAVSADAQGVFQ 107

Query: 90  VLLERGA-DIDARTKGACGWTPLHTAAKERKKEAVRFLIENGAFLPDDIN--DSRFNPPL 146
           +L+   A D+DAR     G TPL  AA+   +  +  LI + A    D+N  D      L
Sbjct: 108 ILIRNRATDLDARMH--DGTTPLILAARLAVEGMLEDLINSHA----DVNAVDDLGKSAL 161

Query: 147 HY 148
           H+
Sbjct: 162 HW 163

>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A Length = 253

 Score =  114 bits (287), Expect = 2e-31
 Identities = 27/110 (24%), Positives = 41/110 (37%), Gaps = 12/110 (10%)

Query: 31  TDDRGWTPLHIGARKGDIKLVKQLLDEGMDVNVAAWGPKSK-GVTPLHLAAQGGHLEVMD 89
            DD G + LH  A   ++     LL  G + ++     ++    TPL LAA+ G  E   
Sbjct: 153 VDDLGKSALHWAAAVNNVDAAVVLLKNGANKDM-----QNNREETPLFLAAREGSYETAK 207

Query: 90  VLLERGADIDARTKGACGWTPLHTAAKERKKEAVRFLIENGAFLPDDIND 139
           VLL+  A+ D          P   A +    + VR L           + 
Sbjct: 208 VLLDHFANRDITDH--MDRLPRDIAQERMHHDIVRLLDLEHH----HHHH 251

>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A Length = 253

 Score =  107 bits (269), Expect = 7e-29
 Identities = 32/133 (24%), Positives = 49/133 (36%), Gaps = 25/133 (18%)

Query: 32  DDRGWTPLHIGARKGD-------------IKLVKQLLDEGMDVNVAAWGPKSK-GVTPLH 77
              G+TPL I +  G                ++   + +G  ++        + G T LH
Sbjct: 7   GPDGFTPLMIASCSGGGLETGNSEEEEDAPAVISDFIYQGASLHNQ----TDRTGETALH 62

Query: 78  LAAQGGHLEVMDVLLERGADIDARTKGACGWTPLHTAAKERKKEAVRFLIENGAFLPDDI 137
           LAA+    +    LLE  AD + +     G TPLH A     +   + LI N A    D+
Sbjct: 63  LAARYSRSDAAKRLLEASADANIQDN--MGRTPLHAAVSADAQGVFQILIRNRA---TDL 117

Query: 138 N--DSRFNPPLHY 148
           +        PL  
Sbjct: 118 DARMHDGTTPLIL 130

>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A Length = 253

 Score = 42.1 bits (100), Expect = 5e-05
 Identities = 14/65 (21%), Positives = 23/65 (35%), Gaps = 16/65 (24%)

Query: 97  DIDARTKGACGWTPLHTAA-------------KERKKEAVRFLIENGAFLPDDINDSRFN 143
           D++ R     G+TPL  A+             +E     +   I  GA L +  + +   
Sbjct: 2   DVNVRGP--DGFTPLMIASCSGGGLETGNSEEEEDAPAVISDFIYQGASLHNQTDRTGET 59

Query: 144 PPLHY 148
             LH 
Sbjct: 60  -ALHL 63

>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase, cyclin dependent kinase inhibitory protein, CDK, cell cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A 1dc2_A 2a5e_A Length = 156

 Score =  114 bits (288), Expect = 1e-32
 Identities = 26/118 (22%), Positives = 44/118 (37%), Gaps = 13/118 (11%)

Query: 31  TDDRGWTPLHIGARKGDIKLVKQLLDEGMDVNVAAWGPKSKGVTPLHLAAQGGHLEVMDV 90
            +  G  P+ +    G  ++ + LL  G + N A     +    P+H AA+ G L+ + V
Sbjct: 41  PNSYGRRPIQV-MMMGSARVAELLLLHGAEPNCAD---PATLTRPVHDAAREGFLDTLVV 96

Query: 91  LLERGADIDARTKGACGWTPLHTAAKERKKEAVRFLIENGAFLPDDINDSRFNPPLHY 148
           L   GA +D R     G  P+  A +   ++  R+L             S        
Sbjct: 97  LHRAGARLDVRDAW--GRLPVDLAEELGHRDVARYLRAAAG----GTRGSN---HARI 145

>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase, cyclin dependent kinase inhibitory protein, CDK, cell cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A 1dc2_A 2a5e_A Length = 156

 Score =  113 bits (286), Expect = 2e-32
 Identities = 28/120 (23%), Positives = 49/120 (40%), Gaps = 14/120 (11%)

Query: 32  DDRGWTPLHIGARKGDIKLVKQLLDEGMDVNVAAWGPKSKGVTPLHLAAQGGHLEVMDVL 91
            +     L   A +G ++ V+ LL+ G + N       S G  P+ +    G   V ++L
Sbjct: 9   MEPSADWLATAAARGRVEEVRALLEAGANPNAPN----SYGRRPIQVMMM-GSARVAELL 63

Query: 92  LERGADIDARTKGACGWT-PLHTAAKERKKEAVRFLIENGAFLPDDIN--DSRFNPPLHY 148
           L  GA+ +         T P+H AA+E   + +  L   GA     ++  D+    P+  
Sbjct: 64  LLHGAEPNCADP--ATLTRPVHDAAREGFLDTLVVLHRAGA----RLDVRDAWGRLPVDL 117

>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase, cyclin dependent kinase inhibitory protein, CDK, cell cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A 1dc2_A 2a5e_A Length = 156

 Score = 89.1 bits (222), Expect = 7e-23
 Identities = 20/94 (21%), Positives = 31/94 (32%), Gaps = 12/94 (12%)

Query: 31  TDDRGWT-PLHIGARKGDIKLVKQLLDEGMDVNVAAWGPKSKGVTPLHLAAQGGHLEVMD 89
            D    T P+H  AR+G +  +  L   G  ++V      + G  P+ LA + GH +V  
Sbjct: 73  ADPATLTRPVHDAAREGFLDTLVVLHRAGARLDVRD----AWGRLPVDLAEELGHRDVAR 128

Query: 90  VLLERGADIDARTKGACGWTPLHTAAKERKKEAV 123
            L                       A E   +  
Sbjct: 129 YLRAAAGGTRGS-------NHARIDAAEGPSDIP 155

>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase, cyclin dependent kinase inhibitory protein, CDK, cell cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A 1dc2_A 2a5e_A Length = 156

 Score = 84.8 bits (211), Expect = 3e-21
 Identities = 19/97 (19%), Positives = 33/97 (34%), Gaps = 16/97 (16%)

Query: 55  LDEGMDVNVAAWGPKSKGVTPLHLAAQGGHLEVMDVLLERGADIDARTKGACGWTPLHTA 114
           ++     ++            L  AA  G +E +  LLE GA+ +A      G  P+   
Sbjct: 1   MEPAAGSSMEP------SADWLATAAARGRVEEVRALLEAGANPNAPNSY--GRRPIQVM 52

Query: 115 AKERKKEAVRFLIENGAFLPDDIN---DSRFNPPLHY 148
                      L+ +GA    + N    +    P+H 
Sbjct: 53  MM-GSARVAELLLLHGA----EPNCADPATLTRPVHD 84

>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase, cyclin dependent kinase inhibitory protein, CDK, cell cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A 1dc2_A 2a5e_A Length = 156

 Score = 59.4 bits (145), Expect = 1e-11
 Identities = 9/59 (15%), Positives = 16/59 (27%), Gaps = 9/59 (15%)

Query: 31  TDDRGWTPLHIGARKGDIKLVKQLLDEGMDVNVAAWGPKSKGVTPLHLAAQGGHLEVMD 89
            D  G  P+ +    G   + + L                 G     + A  G  ++ D
Sbjct: 107 RDAWGRLPVDLAEELGHRDVARYLRAAAGGTR---------GSNHARIDAAEGPSDIPD 156

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major} Length = 364

 Score =  119 bits (301), Expect = 1e-32
 Identities = 29/121 (23%), Positives = 45/121 (37%), Gaps = 16/121 (13%)

Query: 28  VIDTDDRGWTPLHIGARKGDIKLVKQLLDEGMDVNVAAWGPKSKGVTPLHLAAQGGHLEV 87
            I +DD     +H+ ARKG    V++L++ G+   +        G T LHLA + G ++ 
Sbjct: 13  RIKSDDENMEKIHVAARKGQTDEVRRLIETGVSPTIQN----RFGCTALHLACKFGCVDT 68

Query: 88  MDVLLERGADIDARTKGACGWTPLHTAAKERKKEAVRFLIENGAFLPDDINDSRFNPPLH 147
              L   G           G  P+H A    K + V  L+E       +        P  
Sbjct: 69  AKYLASVGEVHSLWH----GQKPIHLAVMANKTDLVVALVEGAK----ERGQM----PES 116

Query: 148 Y 148
            
Sbjct: 117 L 117

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major} Length = 364

 Score =  117 bits (296), Expect = 6e-32
 Identities = 19/116 (16%), Positives = 37/116 (31%), Gaps = 15/116 (12%)

Query: 32  DDRGWTPLHIGARKGDIKLVKQLLDEGMDVNVAAWGPKS---------KGVTPLHLAAQG 82
           D+    PL++  R   + L K+LL +     + A    +           +  +  AA  
Sbjct: 241 DNEHTVPLYLSVRAAMVLLTKELLQKTDVFLIQACPYHNGTTVLPDRVVWLDFVPAAADP 300

Query: 83  GHLEVMDVLLERGADIDARTKGACGWTPLHTAAKERKKEAVRFLIENGAFLPDDIN 138
              EV+ +L E+  ++        G        K+      R  +   A     + 
Sbjct: 301 SKQEVLQLLQEKLDEVVRSLNT--GAGGAVKRKKKAAPAVKRMKLAPSA----PVR 350

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major} Length = 364

 Score =  114 bits (288), Expect = 1e-30
 Identities = 17/129 (13%), Positives = 38/129 (29%), Gaps = 14/129 (10%)

Query: 32  DDRGWTPLHIGARKGDIKLVKQLLDEGMDVNVAAWGPKSK-GVTPLHLAAQGGHLEVMDV 90
           D    TPL       + + +  ++D     +       +K G + LH A      +V   
Sbjct: 170 DKADETPLMRAMEFRNREALDLMMDTVPSKSSLRLDYANKQGNSHLHWAILINWEDVAMR 229

Query: 91  LLERGADIDARTKGACGWTPLHTAAKERKKEAVRFLIENGAFLPD---------DIN--D 139
            +E G D++          PL+ + +       + L++                 +    
Sbjct: 230 FVEMGIDVNMEDN--EHTVPLYLSVRAAMVLLTKELLQKTDVFLIQACPYHNGTTVLPDR 287

Query: 140 SRFNPPLHY 148
             +   +  
Sbjct: 288 VVWLDFVPA 296

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major} Length = 364

 Score =  101 bits (254), Expect = 6e-26
 Identities = 27/122 (22%), Positives = 53/122 (43%), Gaps = 17/122 (13%)

Query: 32  DDRGWTPLHIGARKGDIKLVKQLLDEGMDVNVAAWGPKSKGVTPLHLAAQGG--HLEVMD 89
            +RG  P  +     + ++ +      +  +V       KG T LH     G  +LE++ 
Sbjct: 108 KERGQMPESLLNECDEREVNE------IGSHVKH----CKGQTALHWCVGLGPEYLEMIK 157

Query: 90  VLLERGADIDARTKGACGWTPLHTAAKERKKEAVRFLIENGAFLPD-DIN--DSRFNPPL 146
           +L++ GA   A+ K     TPL  A + R +EA+  +++         ++  + + N  L
Sbjct: 158 ILVQLGASPTAKDKA--DETPLMRAMEFRNREALDLMMDTVPSKSSLRLDYANKQGNSHL 215

Query: 147 HY 148
           H+
Sbjct: 216 HW 217

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major} Length = 364

 Score = 96.5 bits (241), Expect = 6e-24
 Identities = 18/97 (18%), Positives = 37/97 (38%), Gaps = 11/97 (11%)

Query: 53  QLLD-EGMDVNVAAWGPKSKGVTPLHLAAQGGHLEVMDVLLERGADIDARTKGACGWTPL 111
            + D   ++   +      + +  +H+AA+ G  + +  L+E G     + +   G T L
Sbjct: 4   SMTDFPKLNRIKS----DDENMEKIHVAARKGQTDEVRRLIETGVSPTIQNRF--GCTAL 57

Query: 112 HTAAKERKKEAVRFLIENGAFLPDDINDSRFNPPLHY 148
           H A K    +  ++L   G       +      P+H 
Sbjct: 58  HLACKFGCVDTAKYLASVGE----VHSLWHGQKPIHL 90

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major} Length = 364

 Score = 86.5 bits (215), Expect = 2e-20
 Identities = 8/83 (9%), Positives = 24/83 (28%), Gaps = 6/83 (7%)

Query: 32  DDRGWTPLHIGARKGDIKLVKQLLDEGMDVNVAAWGPKSKGVTPLHLAAQGGHLEVMDVL 91
                  +   A     ++++ L ++  +V  +     + G        +     V  + 
Sbjct: 287 RVVWLDFVPAAADPSKQEVLQLLQEKLDEVVRSL----NTGAGGAVKRKKKAAPAVKRMK 342

Query: 92  LERGADIDARTKGACGWTPLHTA 114
           L   A +  R++          +
Sbjct: 343 LAPSAPVRTRSRS--RARSSAVS 363

>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B Length = 156

 Score =  113 bits (285), Expect = 3e-32
 Identities = 31/118 (26%), Positives = 54/118 (45%), Gaps = 14/118 (11%)

Query: 34  RGWTPLHIGARKGDIKLVKQLLD-EGMDVNVAAWGPKSKGVTPLHLAAQGGHLEVMDVLL 92
           R    L   A +GD++ V++LL  E +  +         G T L +    G   +   LL
Sbjct: 1   RAGDRLSGAAARGDVQEVRRLLHRELVHPDALN----RFGKTALQVMMF-GSTAIALELL 55

Query: 93  ERGADIDARTKGACGWTPLHTAAKERKKEAVRFLIENGAFLPDDIN--DSRFNPPLHY 148
           ++GA  + +     G +P+H AA+    + ++ L+E+GA    D+N  D     P+H 
Sbjct: 56  KQGASPNVQDTS--GTSPVHDAARTGFLDTLKVLVEHGA----DVNVPDGTGALPIHL 107

>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B Length = 156

 Score =  112 bits (284), Expect = 4e-32
 Identities = 35/120 (29%), Positives = 55/120 (45%), Gaps = 14/120 (11%)

Query: 31  TDDRGWTPLHIGARKGDIKLVKQLLDEGMDVNVAAWGPKSKGVTPLHLAAQGGHLEVMDV 90
            +  G T L +    G   +  +LL +G   NV      + G +P+H AA+ G L+ + V
Sbjct: 32  LNRFGKTALQV-MMFGSTAIALELLKQGASPNVQD----TSGTSPVHDAARTGFLDTLKV 86

Query: 91  LLERGADIDARTKGACGWTPLHTAAKERKKEAVRFLIENGAFLPDDIN--DSRFNPPLHY 148
           L+E GAD++       G  P+H A +E     V FL    +    D++  D+R   PL  
Sbjct: 87  LVEHGADVNVPDG--TGALPIHLAVQEGHTAVVSFLAA-ES----DLHRRDARGLTPLEL 139

>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B Length = 156

 Score =  107 bits (271), Expect = 3e-30
 Identities = 33/99 (33%), Positives = 46/99 (46%), Gaps = 9/99 (9%)

Query: 31  TDDRGWTPLHIGARKGDIKLVKQLLDEGMDVNVAAWGPKSK-GVTPLHLAAQGGHLEVMD 89
            D  G +P+H  AR G +  +K L++ G DVNV         G  P+HLA Q GH  V+ 
Sbjct: 64  QDTSGTSPVHDAARTGFLDTLKVLVEHGADVNV-----PDGTGALPIHLAVQEGHTAVVS 118

Query: 90  VLLERGADIDARTKGACGWTPLHTAAKERKKEAVRFLIE 128
            L    +D+  R     G TPL  A +   ++ V  L  
Sbjct: 119 FLAA-ESDLHRRDAR--GLTPLELALQRGAQDLVDILQG 154

>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A* Length = 273

 Score =  112 bits (281), Expect = 2e-30
 Identities = 39/141 (27%), Positives = 57/141 (40%), Gaps = 25/141 (17%)

Query: 32  DDRGWTPLH---IGARKGDIKLVKQLLDEGMD-------VNVAAWGPKSKGVTPLHLAAQ 81
            + G T L    +    G    +  LLD           VN +      KG T LH+A +
Sbjct: 51  PETGKTCLLKAMLNLHNGQNDTIALLLDVARKTDSLKQFVNASYTDSYYKGQTALHIAIE 110

Query: 82  GGHLEVMDVLLERGADIDARTKGA------------CGWTPLHTAAKERKKEAVRFLIEN 129
             ++ ++ +L+E GAD+ A   G              G  PL  AA   +   V+FL++N
Sbjct: 111 RRNMTLVTLLVENGADVQAAANGDFFKKTKGRPGFYFGELPLSLAACTNQLAIVKFLLQN 170

Query: 130 GAFLPDDIN--DSRFNPPLHY 148
               P DI+  DS  N  LH 
Sbjct: 171 SWQ-PADISARDSVGNTVLHA 190

>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A* Length = 273

 Score = 97.9 bits (244), Expect = 4e-25
 Identities = 38/129 (29%), Positives = 51/129 (39%), Gaps = 24/129 (18%)

Query: 27  SVIDTDDRGWTPLHIGARKGDIKLVKQLLDEGMDVNVAAWGPKSK----------GVTPL 76
           S  D+  +G T LHI   + ++ LV  L++ G DV  AA G   K          G  PL
Sbjct: 93  SYTDSYYKGQTALHIAIERRNMTLVTLLVENGADVQAAANGDFFKKTKGRPGFYFGELPL 152

Query: 77  HLAAQGGHLEVMDVLLERG---ADIDARTKGACGWTPLHTAAKERKKEAVR--------- 124
            LAA    L ++  LL+     ADI AR     G T LH   +                 
Sbjct: 153 SLAACTNQLAIVKFLLQNSWQPADISARDS--VGNTVLHALVEVADNTVDNTKFVTSMYN 210

Query: 125 FLIENGAFL 133
            ++  GA L
Sbjct: 211 EILILGAKL 219

>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A* Length = 273

 Score = 87.1 bits (216), Expect = 5e-21
 Identities = 24/128 (18%), Positives = 39/128 (30%), Gaps = 26/128 (20%)

Query: 30  DTDDRGWTPLHIGARKGDIKLVKQLLD-------EGMDVNVAAWGPKSKGVTPLHLA--- 79
                    +     + + + ++ LL           D           G T L  A   
Sbjct: 8   PPRLYDRRSIFDAVAQSNCQELESLLPFLQRSKKRLTDSEFKD---PETGKTCLLKAMLN 64

Query: 80  AQGGHLEVMDVLLERGADIDARTKGA---------CGWTPLHTAAKERKKEAVRFLIENG 130
              G  + + +LL+     D+  +            G T LH A + R    V  L+ENG
Sbjct: 65  LHNGQNDTIALLLDVARKTDSLKQFVNASYTDSYYKGQTALHIAIERRNMTLVTLLVENG 124

Query: 131 AFLPDDIN 138
           A    D+ 
Sbjct: 125 A----DVQ 128

>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A* Length = 273

 Score = 79.1 bits (195), Expect = 4e-18
 Identities = 22/98 (22%), Positives = 33/98 (33%), Gaps = 21/98 (21%)

Query: 32  DDRGWTPLHIGARKGD---------IKLVKQLLDEGMDVNVAAWGPKSK---GVTPLHLA 79
           D  G T LH      D           +  ++L  G  ++      +     G+TPL LA
Sbjct: 181 DSVGNTVLHALVEVADNTVDNTKFVTSMYNEILILGAKLHPTLKLEEITNRKGLTPLALA 240

Query: 80  AQGGHLEVMDVLLERGADIDARTKGACGWTPLHTAAKE 117
           A  G + V+  +L+R                 H AA  
Sbjct: 241 ASSGKIGVLAYILQREIH---------EPECRHAAAHH 269

>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A* Length = 273

 Score = 64.0 bits (156), Expect = 1e-12
 Identities = 16/100 (16%), Positives = 31/100 (31%), Gaps = 20/100 (20%)

Query: 68  PKSKGVTPLHLAAQGGHLEVMDVLLE-------RGADIDARTKGACGWTPLHTA---AKE 117
           P+      +  A    + + ++ LL        R  D + +     G T L  A      
Sbjct: 9   PRLYDRRSIFDAVAQSNCQELESLLPFLQRSKKRLTDSEFK-DPETGKTCLLKAMLNLHN 67

Query: 118 RKKEAVRFLIENGA-------FLPDDINDSRFN--PPLHY 148
            + + +  L++          F+     DS +     LH 
Sbjct: 68  GQNDTIALLLDVARKTDSLKQFVNASYTDSYYKGQTALHI 107

>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A* Length = 273

 Score = 53.2 bits (128), Expect = 8e-09
 Identities = 13/54 (24%), Positives = 20/54 (37%), Gaps = 11/54 (20%)

Query: 31  TDDRGWTPLHIGARKGDIKLVKQLLDEGMDVNVAAWGPKSKGVTPLHLAAQGGH 84
           T+ +G TPL + A  G I ++  +L   +                 H AA   H
Sbjct: 229 TNRKGLTPLALAASSGKIGVLAYILQREIH-----------EPECRHAAAHHHH 271

>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A Length = 222

 Score =  110 bits (277), Expect = 2e-30
 Identities = 28/128 (21%), Positives = 49/128 (38%), Gaps = 20/128 (15%)

Query: 32  DDRGWTPLHIGARKGDIKLVKQLLDE-GMDVNVAAWGPKSK-GVTPLHLAAQGGHLEVMD 89
           D  G T L+     G   +V+ L  +  +++N      ++K G T LH AA  G+ +++ 
Sbjct: 103 DKAGSTALYWACHGGHKDIVEMLFTQPNIELNQ-----QNKLGDTALHAAAWKGYADIVQ 157

Query: 90  VLLERGADIDARTKGACGWTPLHTAAKERKKEAVRFLIENGA---------FLPDDINDS 140
           +LL +GA  D R            A        ++      A         +L D+ +D 
Sbjct: 158 LLLAKGARTDLRNI--EKKLAFDMATNAACASLLKKKQGTDAVRTLSNAEDYLDDEDSD- 214

Query: 141 RFNPPLHY 148
                 H+
Sbjct: 215 -LEHHHHH 221

>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A Length = 222

 Score =  104 bits (261), Expect = 5e-28
 Identities = 26/124 (20%), Positives = 42/124 (33%), Gaps = 18/124 (14%)

Query: 28  VIDTDDRGWTPLHIGARKGDIKLVKQLLDEGMDVNVAAWGPKSKGVTPLHLAAQGGHLEV 87
           +I   D   T    G  KG   L+          +            PLH AA+ G+L  
Sbjct: 38  IIYITDMSDTNWWKGTSKGRTGLIPSNYVAEQAES---------IDNPLHEAAKRGNLSW 88

Query: 88  MDVLLERGADIDARTKGACGWTPLHTAAKERKKEAVRFLI-ENGAFLPDDIN--DSRFNP 144
           +   L+    ++   K   G T L+ A     K+ V  L  +       ++N  +   + 
Sbjct: 89  LRECLDNRVGVNGLDKA--GSTALYWACHGGHKDIVEMLFTQPNI----ELNQQNKLGDT 142

Query: 145 PLHY 148
            LH 
Sbjct: 143 ALHA 146

>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A Length = 222

 Score = 92.7 bits (231), Expect = 1e-23
 Identities = 17/120 (14%), Positives = 34/120 (28%), Gaps = 17/120 (14%)

Query: 31  TDDRGWTPLHIGARKGDIKLVKQLLDEGMDVNVAAWGPKSKGVTPLHLAAQGGHLEVMDV 90
               G   +       + +   +L  E  D+            T        G   ++  
Sbjct: 8   PVKPGQVKVFRALYTFEPRTPDELYIEEGDII----YITDMSDTNWWKGTSKGRTGLI-- 61

Query: 91  LLERGADIDARTKGACGWTPLHTAAKERKKEAVRFLIENGAFLPDDIN--DSRFNPPLHY 148
                  +  + +      PLH AAK      +R  ++N       +N  D   +  L++
Sbjct: 62  ---PSNYVAEQAE--SIDNPLHEAAKRGNLSWLRECLDNRV----GVNGLDKAGSTALYW 112

>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A Length = 222

 Score = 91.2 bits (227), Expect = 6e-23
 Identities = 14/87 (16%), Positives = 26/87 (29%), Gaps = 6/87 (6%)

Query: 31  TDDRGWTPLHIGARKGDIKLVKQLLDEGMDVNVAAWGPKSKGVTPLHLAAQGGHLEVMDV 90
            +  G T LH  A KG   +V+ LL +G   ++       +      +A       ++  
Sbjct: 136 QNKLGDTALHAAAWKGYADIVQLLLAKGARTDLRN----IEKKLAFDMATNAACASLLKK 191

Query: 91  LLERGADIDARTKGACGWTPLHTAAKE 117
                A           +     +  E
Sbjct: 192 KQGTDAVRTLSNAE--DYLDDEDSDLE 216

>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium} Length = 192

 Score =  108 bits (272), Expect = 7e-30
 Identities = 32/101 (31%), Positives = 48/101 (47%), Gaps = 8/101 (7%)

Query: 32  DDRGWTPLHIGARKGDIKLVKQLLDEGMDVNVAAWGPKSK-GVTPLHLAAQGGHLEVMDV 90
           D  G TPL      G  ++   LL+ G +VN      ++  G TPL +A++ G  E++  
Sbjct: 98  DFSGKTPLMWSIIFGYSEMSYFLLEHGANVND-----RNLEGETPLIVASKYGRSEIVKK 152

Query: 91  LLERGADIDARTKGACGWTPLHTAAKERKKEAVRFLIENGA 131
           LLE GADI AR     G T   +A    ++E ++   E   
Sbjct: 153 LLELGADISARDL--TGLTAEASARIFGRQEVIKIFTEVRR 191

>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium} Length = 192

 Score =  100 bits (251), Expect = 8e-27
 Identities = 25/119 (21%), Positives = 40/119 (33%), Gaps = 18/119 (15%)

Query: 32  DDRGWTPLHIGARKGDIKLVKQLLDEGMDVNVAAWGPKSKGVTPLHLAAQGGHLEVMDVL 91
           D  G     I   K   + +  L +   D             TPL +A   G    +D L
Sbjct: 5   DKNGEIVEKIKDEKSINQNLDFLRNY-RDSY---------NRTPLMVACMLGMENAIDKL 54

Query: 92  LERGADIDARTKGACGWTPLHTAAKERKKEAVRFLIENGAFLPDDIN--DSRFNPPLHY 148
           +E    ++ +     G T L  A K  +      L+  G+    ++N  D     PL +
Sbjct: 55  VENFDKLEDKDI--EGSTALIWAVKNNRLGIAEKLLSKGS----NVNTKDFSGKTPLMW 107

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1 Length = 373

 Score =  111 bits (281), Expect = 1e-29
 Identities = 26/129 (20%), Positives = 44/129 (34%), Gaps = 22/129 (17%)

Query: 30  DTDDRGWTPLHIGARKGDIKLVKQLLDEGMDVNVAAWGPKSKGVTPLHLAAQGGHLEVMD 89
           + +      LH     G   + + +  E +++            T LH  A     E  +
Sbjct: 89  EPEPESPIKLHT-EAAGSYAITEPITRESVNIID-----PRHNRTVLHWIASNSSAEKSE 142

Query: 90  VLL--------ERGADIDARTKGACGWTPLHTAAKERKKEAVRFLIENGAFLPDDIN--D 139
            L+          GAD++A        TPL  A   R++  V +L++ GA    D    +
Sbjct: 143 DLIVHEAKECIAAGADVNAMDC--DENTPLMLAVLARRRRLVAYLMKAGA----DPTIYN 196

Query: 140 SRFNPPLHY 148
                 LH 
Sbjct: 197 KSERSALHQ 205

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1 Length = 373

 Score =  111 bits (280), Expect = 2e-29
 Identities = 27/102 (26%), Positives = 45/102 (44%), Gaps = 9/102 (8%)

Query: 32  DDRGWTPLHIGARKGDIKLVKQLLDE-GMDVNVAAWGPKSK-GVTPLHLAAQGGHLEVMD 89
             +G T LH  A+  ++ +VK L+ E G + +      + + G TP+ LAAQ G +EV+ 
Sbjct: 276 KYKGRTALHYAAQVSNMPIVKYLVGEKGSNKDK-----QDEDGKTPIMLAAQEGRIEVVM 330

Query: 90  VLLERGADIDARTKGACGWTPLHTAAKERKKEAVRFLIENGA 131
            L+++GA ++A        T    A        V        
Sbjct: 331 YLIQQGASVEAVDAT--DHTARQLAQANNHHNIVDIFDRCRP 370

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1 Length = 373

 Score =  107 bits (270), Expect = 4e-28
 Identities = 29/133 (21%), Positives = 42/133 (31%), Gaps = 23/133 (17%)

Query: 29  IDTDDRGWTPLHIGARKGDIKLV--------KQLLDEGMDVNVAAWGPKSKGVTPLHLAA 80
           I       T LH  A     +          K+ +  G DVN           TPL LA 
Sbjct: 119 IIDPRHNRTVLHWIASNSSAEKSEDLIVHEAKECIAAGADVNAMD----CDENTPLMLAV 174

Query: 81  QGGHLEVMDVLLERGADIDARTKGACGWTPLHTAAKERKKEAVRFLIEN---GAFLPDDI 137
                 ++  L++ GAD     K     + LH AA  R    + +++ +         DI
Sbjct: 175 LARRRRLVAYLMKAGADPTIYNKS--ERSALHQAAANRDFGMMVYMLNSTKLKG----DI 228

Query: 138 N--DSRFNPPLHY 148
              D      L  
Sbjct: 229 EELDRNGMTALMI 241

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1 Length = 373

 Score = 99.3 bits (248), Expect = 6e-25
 Identities = 27/133 (20%), Positives = 50/133 (37%), Gaps = 25/133 (18%)

Query: 32  DDRGWTPLHIGARKGDIKLVKQLLD---EGMDVNVAAWGPKSK-GVTPLHLAAQGGHLEV 87
           +    + LH  A   D  ++  +L+      D+         + G+T L + A     + 
Sbjct: 196 NKSERSALHQAAANRDFGMMVYMLNSTKLKGDIEE-----LDRNGMTALMIVAHNEGRDQ 250

Query: 88  MDV---LLERGADIDARTKGAC------GWTPLHTAAKERKKEAVRFLI-ENGAFLPDDI 137
           +     L+E+GA +D             G T LH AA+      V++L+ E G+    + 
Sbjct: 251 VASAKLLVEKGAKVDYDGAARKDSEKYKGRTALHYAAQVSNMPIVKYLVGEKGS----NK 306

Query: 138 N--DSRFNPPLHY 148
           +  D     P+  
Sbjct: 307 DKQDEDGKTPIML 319

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1 Length = 373

 Score = 89.2 bits (222), Expect = 2e-21
 Identities = 18/119 (15%), Positives = 27/119 (22%), Gaps = 21/119 (17%)

Query: 31  TDDRGWTPLHIGARKGDIKLVKQLLDEGMDVNVAAWGPKSKGVTPLHLAAQGGHLEVMDV 90
           +       L   +  G IK  +  L                 + P       G+  + D 
Sbjct: 33  SITSSQHSLLEASYDGYIKRQRNELQHY-------------SLYPNPQGYGNGNDFLGDF 79

Query: 91  LLERGADIDARTKGACGWTPLHTAAKERKKEAVRFLIENGAFLPDDINDSRFNP-PLHY 148
                               LHT A          +         +I D R N   LH+
Sbjct: 80  NHTNLQIPTEPEP--ESPIKLHTEAA-GSYAITEPITRESV----NIIDPRHNRTVLHW 131

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1 Length = 373

 Score = 78.8 bits (195), Expect = 1e-17
 Identities = 16/68 (23%), Positives = 31/68 (45%), Gaps = 4/68 (5%)

Query: 32  DDRGWTPLHIGARKGDIKLVKQLLDEGMDVNVAAWGPKSKGVTPLHLAAQGGHLEVMDVL 91
           D+ G TP+ + A++G I++V  L+ +G  V        +   T   LA    H  ++D+ 
Sbjct: 310 DEDGKTPIMLAAQEGRIEVVMYLIQQGASVEAVD----ATDHTARQLAQANNHHNIVDIF 365

Query: 92  LERGADID 99
                + +
Sbjct: 366 DRCRPERE 373

>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A Length = 231

 Score =  106 bits (266), Expect = 1e-28
 Identities = 28/114 (24%), Positives = 48/114 (42%), Gaps = 8/114 (7%)

Query: 35  GWTPLHIGARKGDIKLVKQLLDEGMDVNVAAWGPKSKGVTPLHLAAQGGHLEVMDVLLER 94
                ++       +L +++L +                T LH A   GH E+++ LL+ 
Sbjct: 7   NIMICNLAYSGKLDELKERILADKSLATRTD----QDSRTALHWACSAGHTEIVEFLLQL 62

Query: 95  GADIDARTKGACGWTPLHTAAKERKKEAVRFLIENGAFLPDDINDSRFNPPLHY 148
           G  ++ +     GW+PLH AA     E V+ L+  GA +  +  +     PLHY
Sbjct: 63  GVPVNDKDD--AGWSPLHIAASAGXDEIVKALLVKGAHV--NAVNQNGCTPLHY 112

>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A Length = 231

 Score = 97.6 bits (243), Expect = 3e-25
 Identities = 41/119 (34%), Positives = 57/119 (47%), Gaps = 10/119 (8%)

Query: 31  TDDRGWTPLHIGARKGDIKLVKQLLDEGMDVNVAAWGPKSK-GVTPLHLAAQGGHLEVMD 89
           TD    T LH     G  ++V+ LL  G+ VN      K   G +PLH+AA  G  E++ 
Sbjct: 36  TDQDSRTALHWACSAGHTEIVEFLLQLGVPVND-----KDDAGWSPLHIAASAGXDEIVK 90

Query: 90  VLLERGADIDARTKGACGWTPLHTAAKERKKEAVRFLIENGAFLPDDINDSRFNPPLHY 148
            LL +GA ++A  +   G TPLH AA + + E    L+E GA    D  D      +H 
Sbjct: 91  ALLVKGAHVNAVNQN--GCTPLHYAASKNRHEIAVMLLEGGANP--DAKDHYDATAMHR 145

>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A Length = 231

 Score = 86.8 bits (215), Expect = 3e-21
 Identities = 34/118 (28%), Positives = 53/118 (44%), Gaps = 8/118 (6%)

Query: 31  TDDRGWTPLHIGARKGDIKLVKQLLDEGMDVNVAAWGPKSKGVTPLHLAAQGGHLEVMDV 90
            +  G TPLH  A K   ++   LL+ G + +           T +H AA  G+L+++ +
Sbjct: 102 VNQNGCTPLHYAASKNRHEIAVMLLEGGANPDAK----DHYDATAMHRAAAKGNLKMVHI 157

Query: 91  LLERGADIDARTKGACGWTPLHTAAKERKKEAVRFLIENGAFLPDDINDSRFNPPLHY 148
           LL   A  + +     G TPLH A  E + E  +FL+  GA +   I +     PL  
Sbjct: 158 LLFYKASTNIQDTE--GNTPLHLACDEERVEEAKFLVTQGASI--YIENKEEKTPLQV 211

>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A Length = 231

 Score = 86.8 bits (215), Expect = 3e-21
 Identities = 29/109 (26%), Positives = 43/109 (39%), Gaps = 12/109 (11%)

Query: 30  DTDDRGWTPLHIGARKGDIKLVKQLLDEGMDVNVAAWGPKSKGVTPLHLAAQGGHLEVMD 89
             D    T +H  A KG++K+V  LL      N+      ++G TPLHLA     +E   
Sbjct: 134 AKDHYDATAMHRAAAKGNLKMVHILLFYKASTNIQ----DTEGNTPLHLACDEERVEEAK 189

Query: 90  VLLERGADIDARTKGACGWTPLHTAAKERKKEAVRFLIENGAFLPDDIN 138
            L+ +GA I    K     TPL  A        +   +  G     + +
Sbjct: 190 FLVTQGASIYIENKE--EKTPLQVAKG--GLGLILKRLAEGE----EAS 230

>2zgd_A 3 repeat synthetic ankyrin; ankyrin repeat, hydroxylated, de novo protein; 1.90A {Synthetic} PDB: 2zgg_A 2xen_A Length = 110

 Score =  101 bits (254), Expect = 3e-28
 Identities = 30/124 (24%), Positives = 49/124 (39%), Gaps = 17/124 (13%)

Query: 43  ARKGDIKLVKQLLDEGMDVNVAAWGPKSKGVTPLHLAAQGGHLEVMDVLLERGADIDART 102
           +          L+  G  +        S     L  AA+ G  + + +L+  GAD+ A+ 
Sbjct: 2   SSHHHHHHSSGLVPRGSHMG-------SDLGKKLLEAARAGQDDEVRILMANGADVAAKD 54

Query: 103 KGACGWTPLHTAAKERKKEAVRFLIENGAFLPDDI--NDSRFNPPLHYCPSLEWAYEEMM 160
           K   G TPLH AA+    E V+ L+E GA    D+   D           S++   E++ 
Sbjct: 55  KN--GSTPLHLAARNGHLEVVKLLLEAGA----DVXAQDKFGKTAFDI--SIDNGNEDLA 106

Query: 161 RFQR 164
              +
Sbjct: 107 EILQ 110

>2zgd_A 3 repeat synthetic ankyrin; ankyrin repeat, hydroxylated, de novo protein; 1.90A {Synthetic} PDB: 2zgg_A 2xen_A Length = 110

 Score = 99.6 bits (249), Expect = 2e-27
 Identities = 35/98 (35%), Positives = 45/98 (45%), Gaps = 8/98 (8%)

Query: 30  DTDDRGWTPLHIGARKGDIKLVKQLLDEGMDVNVAAWGPKSK-GVTPLHLAAQGGHLEVM 88
                    L   AR G    V+ L+  G DV       K K G TPLHLAA+ GHLEV+
Sbjct: 19  HMGSDLGKKLLEAARAGQDDEVRILMANGADVAA-----KDKNGSTPLHLAARNGHLEVV 73

Query: 89  DVLLERGADIDARTKGACGWTPLHTAAKERKKEAVRFL 126
            +LLE GAD+ A+ K   G T    +     ++    L
Sbjct: 74  KLLLEAGADVXAQDKF--GKTAFDISIDNGNEDLAEIL 109

>2zgd_A 3 repeat synthetic ankyrin; ankyrin repeat, hydroxylated, de novo protein; 1.90A {Synthetic} PDB: 2zgg_A 2xen_A Length = 110

 Score = 74.9 bits (185), Expect = 5e-18
 Identities = 18/72 (25%), Positives = 29/72 (40%), Gaps = 11/72 (15%)

Query: 79  AAQGGHLEVMDVLLERGADIDARTKGACGWTPLHTAAKERKKEAVRFLIENGAFLPDDIN 138
            +   H      L+ RG+ + +          L  AA+  + + VR L+ NGA    D+ 
Sbjct: 1   GSSHHHHHHSSGLVPRGSHMGSD-----LGKKLLEAARAGQDDEVRILMANGA----DVA 51

Query: 139 --DSRFNPPLHY 148
             D   + PLH 
Sbjct: 52  AKDKNGSTPLHL 63

>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis} Length = 186

 Score =  103 bits (260), Expect = 3e-28
 Identities = 21/122 (17%), Positives = 40/122 (32%), Gaps = 15/122 (12%)

Query: 35  GWTPLHIGARKGDIKLVKQLLDEGMDVNVAAWGPKSKGVTPLHLAAQGGHLEVMDVLLER 94
            +  +   A  G  +   +L ++G +   +     +     L         ++   L+ +
Sbjct: 6   EYRTVSAAAMLGTYEDFLELFEKGYEDKESVLK-SNILYDVLRNNNDEARYKISMFLINK 64

Query: 95  GADIDARTKGACGWTPLHTAAKE------RKKEAVRFLIENGAFLPDDIN--DSRFNPPL 146
           GADI +RTK   G T      +          E  +  +E GA    DI      +   +
Sbjct: 65  GADIKSRTKE--GTTLFFPLFQGGGNDITGTTELCKIFLEKGA----DITALYKPYKIVV 118

Query: 147 HY 148
             
Sbjct: 119 FK 120

>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis} Length = 186

 Score =  102 bits (257), Expect = 9e-28
 Identities = 16/121 (13%), Positives = 35/121 (28%), Gaps = 23/121 (19%)

Query: 31  TDDRGWTPLHIGARKG------DIKLVKQLLDEGMDVNVAAWGPKSKGVTPLHLAAQGGH 84
               G T      + G        +L K  L++G D+              +        
Sbjct: 71  RTKEGTTLFFPLFQGGGNDITGTTELCKIFLEKGADITALY----KPYKIVVFKNIFNYF 126

Query: 85  LEVMD-------VLLERGADIDARTKGACGWTPLHTAAKERKKEAVRFLIENGAFLPDDI 137
           ++  +       +  + G  +  + K   G T L    + +K  A++ + +         
Sbjct: 127 VDENEMIPLYKLIFSQSGLQLLIKDK--WGLTALEFVKRCQKPIALKMMEDYIK----KY 180

Query: 138 N 138
           N
Sbjct: 181 N 181

>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis} Length = 186

 Score = 92.4 bits (230), Expect = 8e-24
 Identities = 22/132 (16%), Positives = 40/132 (30%), Gaps = 25/132 (18%)

Query: 32  DDRGWTPLHIGARKGDIKLVKQLLDEGMDVNVAAWGPKSKGVTPLHLAAQGGH------L 85
            +  +  L     +   K+   L+++G D+         +G T      QGG        
Sbjct: 39  SNILYDVLRNNNDEARYKISMFLINKGADIKSR----TKEGTTLFFPLFQGGGNDITGTT 94

Query: 86  EVMDVLLERGADIDARTKGACGWTPLHTAAKERKKEAVR-------FLIENGAFLPDDIN 138
           E+  + LE+GADI A  K       +         +             ++G      + 
Sbjct: 95  ELCKIFLEKGADITALYKP--YKIVVFKNIFNYFVDENEMIPLYKLIFSQSGL----QLL 148

Query: 139 --DSRFNPPLHY 148
             D      L +
Sbjct: 149 IKDKWGLTALEF 160

>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis} Length = 186

 Score = 74.3 bits (183), Expect = 7e-17
 Identities = 7/78 (8%), Positives = 21/78 (26%), Gaps = 11/78 (14%)

Query: 31  TDDRGWTPLHIGARKGD------IKLVKQLLDE-GMDVNVAAWGPKSKGVTPLHLAAQGG 83
                   +              I L K +  + G+ + +        G+T L    +  
Sbjct: 110 LYKPYKIVVFKNIFNYFVDENEMIPLYKLIFSQSGLQLLIKD----KWGLTALEFVKRCQ 165

Query: 84  HLEVMDVLLERGADIDAR 101
               + ++ +     + +
Sbjct: 166 KPIALKMMEDYIKKYNLK 183

>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A Length = 256

 Score =  102 bits (257), Expect = 4e-27
 Identities = 33/140 (23%), Positives = 50/140 (35%), Gaps = 22/140 (15%)

Query: 32  DDRGWTPLHIGA---RKGDIKLVKQLLDEGMDVNVAAWGPK-------SKGVTPLHLAAQ 81
              G T L       + G    +  LL    D                 +G + LH+A +
Sbjct: 40  GSTGKTCLMKAVLNLQDGVNACIMPLLQIDKDSGNPKPLVNAQCTDEFYQGHSALHIAIE 99

Query: 82  GGHLEVMDVLLERGADIDARTKGAC-----------GWTPLHTAAKERKKEAVRFLIENG 130
              L+ + +L+E GAD+  R  G             G  PL  AA  ++ + V +L+EN 
Sbjct: 100 KRSLQCVKLLVENGADVHLRACGRFFQKHQGTCFYFGELPLSLAACTKQWDVVTYLLENP 159

Query: 131 AFLPD-DINDSRFNPPLHYC 149
                 +  DS  N  LH  
Sbjct: 160 HQPASLEATDSLGNTVLHAL 179

>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A Length = 256

 Score =  101 bits (253), Expect = 1e-26
 Identities = 34/150 (22%), Positives = 52/150 (34%), Gaps = 32/150 (21%)

Query: 27  SVIDTDDRGWTPLHIGARKGDIKLVKQLLDEGMDVNVAAWG---------PKSKGVTPLH 77
              D   +G + LHI   K  ++ VK L++ G DV++ A G             G  PL 
Sbjct: 82  QCTDEFYQGHSALHIAIEKRSLQCVKLLVENGADVHLRACGRFFQKHQGTCFYFGELPLS 141

Query: 78  LAAQGGHLEVMDVLLERG---ADIDARTKGACGWTPLH----------------TAAKER 118
           LAA     +V+  LLE     A ++A      G T LH                    + 
Sbjct: 142 LAACTKQWDVVTYLLENPHQPASLEATDSL--GNTVLHALVMIADNSPENSALVIHMYDG 199

Query: 119 KKEAVRFLIENGAFLPDDINDSRFNPPLHY 148
             +    L         +I++ +   PL  
Sbjct: 200 LLQMGARLCPTVQLE--EISNHQGLTPLKL 227

>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A Length = 256

 Score = 99.9 bits (249), Expect = 6e-26
 Identities = 25/129 (19%), Positives = 40/129 (31%), Gaps = 17/129 (13%)

Query: 18  KASRKRFFRSVIDTDDRGWTPLHIGARKGDIKLVKQLLDEGM---DVNV----------- 63
           +A  + F +        G  PL + A      +V  LL+       +             
Sbjct: 119 RACGRFFQKHQGTCFYFGELPLSLAACTKQWDVVTYLLENPHQPASLEATDSLGNTVLHA 178

Query: 64  -AAWGPKSKGVTPLHLAAQGGHLEVMDVLLERGADIDARTKGACGWTPLHTAAKERKKEA 122
                  S   + L +    G L++   L       +       G TPL  AAKE K E 
Sbjct: 179 LVMIADNSPENSALVIHMYDGLLQMGARLCPTVQLEEISNHQ--GLTPLKLAAKEGKIEI 236

Query: 123 VRFLIENGA 131
            R +++   
Sbjct: 237 FRHILQREF 245

>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A Length = 256

 Score = 75.2 bits (185), Expect = 1e-16
 Identities = 17/74 (22%), Positives = 32/74 (43%), Gaps = 4/74 (5%)

Query: 27  SVIDTDDRGWTPLHIGARKGDIKLVKQLLDEGMDVNVAAWGPKSKGVTPLHLAAQGGHLE 86
            +I  +    + L I    G +++  +L        +       +G+TPL LAA+ G +E
Sbjct: 180 VMIADNSPENSALVIHMYDGLLQMGARLCPTVQLEEI----SNHQGLTPLKLAAKEGKIE 235

Query: 87  VMDVLLERGADIDA 100
           +   +L+R     A
Sbjct: 236 IFRHILQREFSGAA 249

>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A Length = 256

 Score = 71.0 bits (174), Expect = 3e-15
 Identities = 27/118 (22%), Positives = 45/118 (38%), Gaps = 20/118 (16%)

Query: 37  TPLHIGARKGDIKLVKQLLDE----GMDVNVAAWGPKSKGVTPLHLAA---QGGHLEVMD 89
             L     +G  + +  LL+        +  +A+   S G T L  A    Q G    + 
Sbjct: 4   DRLFSVVSRGVPEELTGLLEYLRWNSKYLTDSAYTEGSTGKTCLMKAVLNLQDGVNACIM 63

Query: 90  VLLERGAD---------IDARTKGACGWTPLHTAAKERKKEAVRFLIENGAFLPDDIN 138
            LL+   D              +   G + LH A ++R  + V+ L+ENGA    D++
Sbjct: 64  PLLQIDKDSGNPKPLVNAQCTDEFYQGHSALHIAIEKRSLQCVKLLVENGA----DVH 117

>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A Length = 256

 Score = 49.8 bits (119), Expect = 1e-07
 Identities = 17/93 (18%), Positives = 27/93 (29%), Gaps = 18/93 (19%)

Query: 74  TPLHLAAQGGHLEVMDVLLE------RGADIDARTKGACGWTPLHTAAKERK---KEAVR 124
             L      G  E +  LLE      +     A T+G+ G T L  A    +      + 
Sbjct: 4   DRLFSVVSRGVPEELTGLLEYLRWNSKYLTDSAYTEGSTGKTCLMKAVLNLQDGVNACIM 63

Query: 125 FLIENGAFLPD-------DINDSRFN--PPLHY 148
            L++      +          D  +     LH 
Sbjct: 64  PLLQIDKDSGNPKPLVNAQCTDEFYQGHSALHI 96

>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A Length = 256

 Score = 38.6 bits (90), Expect = 6e-04
 Identities = 9/34 (26%), Positives = 19/34 (55%)

Query: 31  TDDRGWTPLHIGARKGDIKLVKQLLDEGMDVNVA 64
           ++ +G TPL + A++G I++ + +L        A
Sbjct: 217 SNHQGLTPLKLAAKEGKIEIFRHILQREFSGAAA 250

>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A Length = 260

 Score =  101 bits (254), Expect = 1e-26
 Identities = 39/158 (24%), Positives = 59/158 (37%), Gaps = 25/158 (15%)

Query: 32  DDRGWTPLHIGA---RKGDIKLVKQLLDEGMD-------VNVAAWGPKSKGVTPLHLAAQ 81
              G T L         G    +  LLD           +N        +G T LH+A +
Sbjct: 43  PSTGKTCLPKALLNLSAGRNDTIPILLDIAEKTGNMREFINSPFRDVYYRGQTALHIAIE 102

Query: 82  GGHLEVMDVLLERGADIDARTKGA------------CGWTPLHTAAKERKKEAVRFLIEN 129
                 +++L+E+GAD+ A+ +G              G  PL  AA   +   V +L EN
Sbjct: 103 RRCKHYVELLVEKGADVHAQARGRFFQPKDEGGYFYFGELPLSLAACTNQPHIVHYLTEN 162

Query: 130 GAFLPDDIN--DSRFNPPLHYCPSLEWAYEEMMRFQRE 165
           G     D+   DSR N  LH   ++     E  +F  +
Sbjct: 163 GHK-QADLRRQDSRGNTVLHALVAIADNTRENTKFVTK 199

>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A Length = 260

 Score = 99.5 bits (248), Expect = 7e-26
 Identities = 36/148 (24%), Positives = 50/148 (33%), Gaps = 29/148 (19%)

Query: 28  VIDTDDRGWTPLHIGARKGDIKLVKQLLDEGMDVNVAAWGPKSK----------GVTPLH 77
             D   RG T LHI   +     V+ L+++G DV+  A G   +          G  PL 
Sbjct: 86  FRDVYYRGQTALHIAIERRCKHYVELLVEKGADVHAQARGRFFQPKDEGGYFYFGELPLS 145

Query: 78  LAAQGGHLEVMDVLLERG---ADIDARTKGACGWTPLHTAA---------KERKKEAVRF 125
           LAA      ++  L E G   AD+  +     G T LH             +   +    
Sbjct: 146 LAACTNQPHIVHYLTENGHKQADLRRQDSR--GNTVLHALVAIADNTRENTKFVTKMYDL 203

Query: 126 LIENGAFLPDDINDSRFNP-----PLHY 148
           L+   A L  D N           PL  
Sbjct: 204 LLIKCAKLFPDTNLEALLNNDGLSPLMM 231

>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A Length = 260

 Score = 92.9 bits (231), Expect = 3e-23
 Identities = 27/131 (20%), Positives = 43/131 (32%), Gaps = 27/131 (20%)

Query: 35  GWTPLHIGARKGDIKLVKQLLDEGM---DVNVAAWGPKSKGVTPLHLAAQGGH------- 84
           G  PL + A      +V  L + G    D+        S+G T LH              
Sbjct: 140 GELPLSLAACTNQPHIVHYLTENGHKQADLRRQD----SRGNTVLHALVAIADNTRENTK 195

Query: 85  --LEVMDVLLERGADIDARTKGAC-----GWTPLHTAAKERKKEAVRFLIENGAFLPDDI 137
              ++ D+LL + A +   T         G +PL  AAK  K    + +I          
Sbjct: 196 FVTKMYDLLLIKCAKLFPDTNLEALLNNDGLSPLMMAAKTGKIGIFQHIIRREI----AD 251

Query: 138 NDSRFNPPLHY 148
             +  +   H+
Sbjct: 252 AAAHHH--HHH 260

>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A Length = 260

 Score = 80.2 bits (198), Expect = 1e-18
 Identities = 26/118 (22%), Positives = 38/118 (32%), Gaps = 20/118 (16%)

Query: 37  TPLHIGARKGDIK----LVKQLLDEGMDVNVAAWGPKSKGVTPLHLAA---QGGHLEVMD 89
             L     +G       L+  LL     +    +   S G T L  A      G  + + 
Sbjct: 7   PILFDIVSRGSPDGLEGLLSFLLTHKKRLTDEEFREPSTGKTCLPKALLNLSAGRNDTIP 66

Query: 90  VLLERGADIDART---------KGACGWTPLHTAAKERKKEAVRFLIENGAFLPDDIN 138
           +LL+                      G T LH A + R K  V  L+E GA    D++
Sbjct: 67  ILLDIAEKTGNMREFINSPFRDVYYRGQTALHIAIERRCKHYVELLVEKGA----DVH 120

>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A Length = 260

 Score = 64.0 bits (156), Expect = 1e-12
 Identities = 19/84 (22%), Positives = 30/84 (35%), Gaps = 13/84 (15%)

Query: 32  DDRGWTPLHIGARKGD---------IKLVKQLLDEGMDVNVAAWGPKSK---GVTPLHLA 79
           D RG T LH      D          K+   LL +   +             G++PL +A
Sbjct: 173 DSRGNTVLHALVAIADNTRENTKFVTKMYDLLLIKCAKLFPDTNLEALLNNDGLSPLMMA 232

Query: 80  AQGGHLEVMDVLLERGA-DIDART 102
           A+ G + +   ++ R   D  A  
Sbjct: 233 AKTGKIGIFQHIIRREIADAAAHH 256

>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A Length = 260

 Score = 53.6 bits (129), Expect = 5e-09
 Identities = 14/98 (14%), Positives = 26/98 (26%), Gaps = 18/98 (18%)

Query: 69  KSKGVTPLHLAA----QGGHLEVMDVLLERGADIDAR--TKGACGWTPLHTAA---KERK 119
           K      L          G   ++  LL     +      + + G T L  A       +
Sbjct: 2   KVFNRPILFDIVSRGSPDGLEGLLSFLLTHKKRLTDEEFREPSTGKTCLPKALLNLSAGR 61

Query: 120 KEAVRFLIENGA-------FLPDDINDSRFNP--PLHY 148
            + +  L++          F+     D  +     LH 
Sbjct: 62  NDTIPILLDIAEKTGNMREFINSPFRDVYYRGQTALHI 99

>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics, PSI, protein structure initiative; 2.80A {Legionella pneumophila} SCOP: a.118.24.1 Length = 376

 Score = 98.5 bits (245), Expect = 1e-24
 Identities = 20/105 (19%), Positives = 38/105 (36%), Gaps = 3/105 (2%)

Query: 28  VIDTDDRGWTPLHIGARKGDIKLVKQLLDEGMDVNVAAWGPKSKGVTPLHLAAQGGHLEV 87
           V       +    + A  G + ++ +L +      +A    +++      LAA+ GHL V
Sbjct: 121 VKVIQAENYQAFRLAAENGHLHVLNRLCELAPTEIMAM--IQAENYHAFRLAAENGHLHV 178

Query: 88  MDVLLERGADIDARTKGACGWTPLHTAAKER-KKEAVRFLIENGA 131
           ++ L E           A  +     AA  R     + FL++   
Sbjct: 179 LNRLCELAPTEATAMIQAENYYAFRWAAVGRGHHNVINFLLDCPV 223

>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics, PSI, protein structure initiative; 2.80A {Legionella pneumophila} SCOP: a.118.24.1 Length = 376

 Score = 92.7 bits (230), Expect = 2e-22
 Identities = 21/131 (16%), Positives = 38/131 (29%), Gaps = 7/131 (5%)

Query: 22  KRFFRSVIDTDDRGWTPLHIGARKGD---IKLVKQLLDEGMDVNVAAWGPKSKGVTPLHL 78
           K+ +        +      + A  G    +  +  LL     V V      ++      L
Sbjct: 79  KQLWSDAHKKGIKSEVICFVAAITGCSSALDTLCLLLTSDEIVKVIQ----AENYQAFRL 134

Query: 79  AAQGGHLEVMDVLLERGADIDARTKGACGWTPLHTAAKERKKEAVRFLIENGAFLPDDIN 138
           AA+ GHL V++ L E           A  +     AA+      +  L E        + 
Sbjct: 135 AAENGHLHVLNRLCELAPTEIMAMIQAENYHAFRLAAENGHLHVLNRLCELAPTEATAMI 194

Query: 139 DSRFNPPLHYC 149
            +       + 
Sbjct: 195 QAENYYAFRWA 205

>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics, PSI, protein structure initiative; 2.80A {Legionella pneumophila} SCOP: a.118.24.1 Length = 376

 Score = 71.9 bits (176), Expect = 4e-15
 Identities = 15/114 (13%), Positives = 35/114 (30%), Gaps = 11/114 (9%)

Query: 28  VIDTDDRGWTPLHIGARKGDIKLVKQLLDEGMDVNVAAWGPKSKGVTPLHLAA-QGGHLE 86
           +       +    + A  G + ++ +L +       A    +++       AA   GH  
Sbjct: 156 MAMIQAENYHAFRLAAENGHLHVLNRLCELAPTEATAM--IQAENYYAFRWAAVGRGHHN 213

Query: 87  VMDVLLERGADIDARTKGACGWTPL--------HTAAKERKKEAVRFLIENGAF 132
           V++ LL+    +         +           H    +   +A +    +G F
Sbjct: 214 VINFLLDCPVMLAYAEIHEFEYGEKYVNPFIARHVNRLKEMHDAFKLSNPDGVF 267

>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics, PSI, protein structure initiative; 2.80A {Legionella pneumophila} SCOP: a.118.24.1 Length = 376

 Score = 70.7 bits (173), Expect = 1e-14
 Identities = 14/106 (13%), Positives = 31/106 (29%), Gaps = 9/106 (8%)

Query: 30  DTDDRGWTPLHIGARKGD---IKLVKQLLDEGMDVNVAAWGPKSK-GVTPLHLAAQGGHL 85
               +G+  L    R+ D   +  ++ LL       +A            L LA + G+ 
Sbjct: 273 SECLQGFYMLRNLIRRNDEVLLDDIRFLLSIPGIKALAPTATIPGDANELLRLALRLGNQ 332

Query: 86  EVMDVLLERGADIDARTKGACGWTPLHTAAKERKKEAVRFLIENGA 131
               +LL   + +             +      + +     +E+  
Sbjct: 333 GACALLLSIPSVLALTKA-----NNYYINETGGRLDLRAVALEHHH 373

>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics, PSI, protein structure initiative; 2.80A {Legionella pneumophila} SCOP: a.118.24.1 Length = 376

 Score = 63.4 bits (154), Expect = 3e-12
 Identities = 15/154 (9%), Positives = 33/154 (21%), Gaps = 53/154 (34%)

Query: 29  IDTDDRGWTPLHIGA-RKGDIKLVKQLLDEGMDVNVA-----AWG--------------- 67
                  +      A  +G   ++  LLD  + +  A      +G               
Sbjct: 192 AMIQAENYYAFRWAAVGRGHHNVINFLLDCPVMLAYAEIHEFEYGEKYVNPFIARHVNRL 251

Query: 68  ----------------------PKSKGVTPLHLAAQGGHLEVMDVL--------LERGAD 97
                                    +G   L    +     ++D +        ++  A 
Sbjct: 252 KEMHDAFKLSNPDGVFDLVTKSECLQGFYMLRNLIRRNDEVLLDDIRFLLSIPGIKALAP 311

Query: 98  IDARTKGACGWTPLHTAAKERKKEAVRFLIENGA 131
                        L  A +   + A   L+   +
Sbjct: 312 TATIPGD--ANELLRLALRLGNQGACALLLSIPS 343

>1sw6_A Regulatory protein SWI6; transcription regulation, ankyrin repeats, cell-cycle; 2.10A {Saccharomyces cerevisiae} SCOP: d.211.1.1 Length = 327

 Score = 78.9 bits (194), Expect = 1e-17
 Identities = 21/111 (18%), Positives = 38/111 (34%), Gaps = 14/111 (12%)

Query: 29  IDTDDRGWTPLHIGARKGDIKLVKQLLDEGMDVNVAAWGPKSKGVTPLHLAAQGGHL--- 85
           I  D+ G TPLH      +++LVK L+  G +         + G + L  A +  +    
Sbjct: 125 IPVDEHGNTPLHWLTSIANLELVKHLVKHGSNRLY----GDNMGESCLVKAVKSVNNYDS 180

Query: 86  -EVMDVLLERGADIDARTKGACGWTPLH----TAAKERKKEAVRFLIENGA 131
                +L      +          T LH    T+       A ++ ++   
Sbjct: 181 GTFEALLDYLYPCLILEDS--MNRTILHHIIITSGMTGCSAAAKYYLDILM 229

>1sw6_A Regulatory protein SWI6; transcription regulation, ankyrin repeats, cell-cycle; 2.10A {Saccharomyces cerevisiae} SCOP: d.211.1.1 Length = 327

 Score = 77.4 bits (190), Expect = 3e-17
 Identities = 20/124 (16%), Positives = 41/124 (33%), Gaps = 13/124 (10%)

Query: 30  DTDDRGWTPLHIGARKGDIKLVKQLLDEGMDVNVAAWGPKSKGVTPLHLAAQGGHLEVMD 89
           +         H+       ++     +  +++N+        G TPLH      +LE++ 
Sbjct: 92  EGGSSNQQQQHVSFDSLLQEVNDAFPNTQLNLNIPV---DEHGNTPLHWLTSIANLELVK 148

Query: 90  VLLERGADIDARTKGACGWTPLHTAAKER---KKEAVRFLIENGAFLPDDIN--DSRFNP 144
            L++ G++         G + L  A K            L++        +   DS    
Sbjct: 149 HLVKHGSNRLYGDN--MGESCLVKAVKSVNNYDSGTFEALLDYLY---PCLILEDSMNRT 203

Query: 145 PLHY 148
            LH+
Sbjct: 204 ILHH 207

>1sw6_A Regulatory protein SWI6; transcription regulation, ankyrin repeats, cell-cycle; 2.10A {Saccharomyces cerevisiae} SCOP: d.211.1.1 Length = 327

 Score = 74.3 bits (182), Expect = 4e-16
 Identities = 22/136 (16%), Positives = 43/136 (31%), Gaps = 20/136 (14%)

Query: 27  SVIDTDDRGWTPLHIGARKGDIK------------LVKQLLDEGMDVNVAAWGPKSKGVT 74
            +I  D    T LH       +             L+  ++ +      +    K     
Sbjct: 193 CLILEDSMNRTILHHIIITSGMTGCSAAAKYYLDILMGWIVKKQNRPIQSGTNEKESKPN 252

Query: 75  PLHLAAQGGHLEVMDVLLERGADIDARTKGACGWTPLHTAAKERKKEAVRFLIENGAFLP 134
             +   +   LE +D+       ++A+     G T L+ AA+      V  L++ GA   
Sbjct: 253 DKNGERKDSILENLDLKWIIANMLNAQDSN--GDTCLNIAARLGNISIVDALLDYGA--- 307

Query: 135 DDIN--DSRFNPPLHY 148
            D    +     P+ +
Sbjct: 308 -DPFIANKSGLRPVDF 322

>1sw6_A Regulatory protein SWI6; transcription regulation, ankyrin repeats, cell-cycle; 2.10A {Saccharomyces cerevisiae} SCOP: d.211.1.1 Length = 327

 Score = 67.0 bits (163), Expect = 2e-13
 Identities = 18/86 (20%), Positives = 35/86 (40%), Gaps = 6/86 (6%)

Query: 30  DTDDRGWTPLHIGARKGDIKLVKQLLDEGMDVNVAAWGPKSKGVTPLHLAAQGGHLEVMD 89
           +  +      +   +   ++ +         +N       S G T L++AA+ G++ ++D
Sbjct: 245 NEKESKPNDKNGERKDSILENLDLKWIIANMLNA----QDSNGDTCLNIAARLGNISIVD 300

Query: 90  VLLERGADIDARTKGACGWTPLHTAA 115
            LL+ GAD     K   G  P+   A
Sbjct: 301 ALLDYGADPFIANK--SGLRPVDFGA 324

>1sw6_A Regulatory protein SWI6; transcription regulation, ankyrin repeats, cell-cycle; 2.10A {Saccharomyces cerevisiae} SCOP: d.211.1.1 Length = 327

 Score = 59.7 bits (144), Expect = 7e-11
 Identities = 19/64 (29%), Positives = 29/64 (45%), Gaps = 5/64 (7%)

Query: 19  ASRKRFFRSVIDT-DDRGWTPLHIGARKGDIKLVKQLLDEGMDVNVAAWGPKSKGVTPLH 77
              K    ++++  D  G T L+I AR G+I +V  LLD G D  +        G+ P+ 
Sbjct: 266 LDLKWIIANMLNAQDSNGDTCLNIAARLGNISIVDALLDYGADPFI----ANKSGLRPVD 321

Query: 78  LAAQ 81
             A 
Sbjct: 322 FGAG 325

>1dcq_A PYK2-associated protein beta; zinc-binding module, ankyrin repeats, metal binding protein; 2.10A {Mus musculus} SCOP: d.211.1.1 g.45.1.1 Length = 278

 Score = 66.6 bits (162), Expect = 2e-13
 Identities = 23/102 (22%), Positives = 41/102 (40%), Gaps = 9/102 (8%)

Query: 30  DTDDRGWTPLHIGARKGD---IKLVKQLLDEGMDVNVAAWGPKSKGVTPLHLAAQGGHLE 86
           +  +   T LH+  R  D   + +V  L+    +++        KG T LH      + E
Sbjct: 164 NGHEPDETALHLAVRSVDRTSLHIVDFLVQNSGNLDK----QTGKGSTALHYCCLTDNAE 219

Query: 87  VMDVLLERGADIDARTKGACGWTPLHTAAKERKKEAVRFLIE 128
            + +LL   A I+   +   G TPL  A + + +     L +
Sbjct: 220 CLKLLLRGKASIEIANES--GETPLDIAKRLKHEHCEELLTQ 259

>3lvq_E ARF-GAP with SH3 domain, ANK repeat and PH domain containing protein 3, ADP-ribosylation...; GDP, ASAP3, UPLC1, linkers, alternat splicing; HET: GDP; 3.38A {Homo sapiens} PDB: 3lvr_E* Length = 497

 Score = 66.8 bits (163), Expect = 3e-13
 Identities = 32/141 (22%), Positives = 50/141 (35%), Gaps = 13/141 (9%)

Query: 18  KASRKRFFRSVIDTDDRGWTPLHIGARKGDIKLVKQLLDEGMDVNVAAWGP--KSKGVTP 75
           K    RF R       R    L       D+  V +    G D      GP  ++     
Sbjct: 119 KYVEHRFARRCTPEPQR----LWTAICNRDLLSVLEAFANGQDFGQPLPGPDAQAPEELV 174

Query: 76  LHLA---AQGGHLEVMDVLLERGADIDARTKGACGWTPLHTAAKERKKEAVRFLIENGAF 132
           LHLA   A    L ++D +++ G  +DA+   A G T LH AA   + + ++ L++  A 
Sbjct: 175 LHLAVKVANQASLPLVDFIIQNGGHLDAKA--ADGNTALHYAALYNQPDCLKLLLKGRA- 231

Query: 133 LPDDINDSRFNPPLHYCPSLE 153
                 +      L       
Sbjct: 232 -LVGTVNEAGETALDIARKKH 251

>2b0o_E UPLC1; arfgap, structural genomics, structural genomics consortium, SGC, metal binding protein; 2.06A {Homo sapiens} Length = 301

 Score = 63.9 bits (155), Expect = 2e-12
 Identities = 31/121 (25%), Positives = 48/121 (39%), Gaps = 11/121 (9%)

Query: 16  QRKASRKRFFRSVIDTDDRGWTPLHIGARKGDIKLVKQLLDEGMDVNVAAWGP--KSKGV 73
             K    RF R       R WT         D+  V +    G D      GP  ++   
Sbjct: 136 MAKYVEHRFARRCTPEPQRLWT----AICNRDLLSVLEAFANGQDFGQPLPGPDAQAPEE 191

Query: 74  TPLHLA---AQGGHLEVMDVLLERGADIDARTKGACGWTPLHTAAKERKKEAVRFLIENG 130
             LHLA   A    L ++D +++ G  +DA+     G T LH AA   + + ++ L++  
Sbjct: 192 LVLHLAVKVANQASLPLVDFIIQNGGHLDAKAAD--GNTALHYAALYNQPDCLKLLLKGR 249

Query: 131 A 131
           A
Sbjct: 250 A 250

>2b0o_E UPLC1; arfgap, structural genomics, structural genomics consortium, SGC, metal binding protein; 2.06A {Homo sapiens} Length = 301

 Score = 62.3 bits (151), Expect = 6e-12
 Identities = 24/102 (23%), Positives = 40/102 (39%), Gaps = 9/102 (8%)

Query: 30  DTDDRGWTPLHIGARKGDIK---LVKQLLDEGMDVNVAAWGPKSKGVTPLHLAAQGGHLE 86
           D        LH+  +  +     LV  ++  G  ++  A    + G T LH AA     +
Sbjct: 185 DAQAPEELVLHLAVKVANQASLPLVDFIIQNGGHLDAKA----ADGNTALHYAALYNQPD 240

Query: 87  VMDVLLERGADIDARTKGACGWTPLHTAAKERKKEAVRFLIE 128
            + +LL+  A +    +   G T L  A K+  KE    L +
Sbjct: 241 CLKLLLKGRALVGTVNEA--GETALDIARKKHHKECEELLEQ 280

>3jue_A Arfgap with coiled-coil, ANK repeat and PH domain containing protein 1; arfgap domain, zinc-binding module, GTPase activ metal-binding, nitration; 2.30A {Homo sapiens} Length = 368

 Score = 62.1 bits (150), Expect = 1e-11
 Identities = 27/129 (20%), Positives = 39/129 (30%), Gaps = 6/129 (4%)

Query: 20  SRKRFFRSVIDTDDRGWTPLHIGARKGDIKLVKQLLDEGMDVNVAAWGPKSKGVTPLHLA 79
           S+       + +   G            +  +   L  G DVN           TPL  A
Sbjct: 185 SKPEPPSEDLGSLHPGALLFRASGHPPSLPTMADALAHGADVNWV--NGGQDNATPLIQA 242

Query: 80  AQGGHLEVMDVLLERGADIDARTKGACGWTPLHTAAKERKKEAVRFLIENGAFLPDDIND 139
                L   + LL+ GA+++       G  PLH A            ++ GA       D
Sbjct: 243 TAANSLLACEFLLQNGANVNQADSA--GRGPLHHATILGHTGLACLFLKRGA--DLGARD 298

Query: 140 SRFNPPLHY 148
           S    PL  
Sbjct: 299 SEGRDPLTI 307

>3jue_A Arfgap with coiled-coil, ANK repeat and PH domain containing protein 1; arfgap domain, zinc-binding module, GTPase activ metal-binding, nitration; 2.30A {Homo sapiens} Length = 368

 Score = 59.8 bits (144), Expect = 5e-11
 Identities = 29/97 (29%), Positives = 39/97 (40%), Gaps = 6/97 (6%)

Query: 30  DTDDRGWTPLHIGARKGDIKLVKQLLDEGMDVNVAAWGPKSKGVTPLHLAAQGGHLEVMD 89
           +      TPL        +   + LL  G +VN       S G  PLH A   GH  +  
Sbjct: 230 NGGQDNATPLIQATAANSLLACEFLLQNGANVNQ----ADSAGRGPLHHATILGHTGLAC 285

Query: 90  VLLERGADIDARTKGACGWTPLHTAAKERKKEAVRFL 126
           + L+RGAD+ AR     G  PL  A +    + V  L
Sbjct: 286 LFLKRGADLGARDSE--GRDPLTIAMETANADIVTLL 320

>3jue_A Arfgap with coiled-coil, ANK repeat and PH domain containing protein 1; arfgap domain, zinc-binding module, GTPase activ metal-binding, nitration; 2.30A {Homo sapiens} Length = 368

 Score = 45.2 bits (106), Expect = 6e-06
 Identities = 24/84 (28%), Positives = 32/84 (38%), Gaps = 2/84 (2%)

Query: 66  WGPKSKGVTPLHLAAQGGHLEVMDVLLERGADIDARTKGACGWTPLHTAAKERKKEAVRF 125
            G    G      +     L  M   L  GAD++    G    TPL  A       A  F
Sbjct: 194 LGSLHPGALLFRASGHPPSLPTMADALAHGADVNWVNGGQDNATPLIQATAANSLLACEF 253

Query: 126 LIENGAFLPDDINDSRFNPPLHYC 149
           L++NGA +  +  DS    PLH+ 
Sbjct: 254 LLQNGANV--NQADSAGRGPLHHA 275

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	210
4gpm_A	169	Engineered protein OR264; de novo protein, structu	99.97
3c5r_A	137	BARD-1, BRCA1-associated ring domain protein 1; an	99.95
3f6q_A	179	Integrin-linked protein kinase; ILK, integrin-link	99.95
1d9s_A	136	Cyclin-dependent kinase 4 inhibitor B; helix-turn-	99.95
3v30_A	172	DNA-binding protein rfxank; structural genomics co	99.95
3twr_A	165	Tankyrase-2; ankyrin repeat, protein-protein inter	99.95
4gpm_A	169	Engineered protein OR264; de novo protein, structu	99.95
3v31_A	167	Ankyrin repeat family A protein 2; structural geno	99.95
2y1l_E	169	Darpin-8.4; hydrolase-inhibitor complex, DEVD darp	99.95
1awc_B	153	Protein (GA binding protein beta 1); complex (tran	99.94
2jab_A	136	H10-2-G3; HER2, darpin, ankyrin repeat protein, me	99.94
3aaa_C	123	Myotrophin, protein V-1; actin capping protein, ba	99.94
2rfm_A	192	Putative ankyrin repeat protein TV1425; ANK repeat	99.94
1bd8_A	156	P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyr	99.94
4b93_B	269	Ankyrin repeat domain-containing protein 27; endoc	99.94
2rfm_A	192	Putative ankyrin repeat protein TV1425; ANK repeat	99.94
1ihb_A	162	P18-INK4C(INK6), cyclin-dependent kinase 6 inhibit	99.93
1n0r_A	126	4ANK, 4 ankyrin repeats; structural protein; 1.50A	99.93
4b93_B	269	Ankyrin repeat domain-containing protein 27; endoc	99.93
1bi7_B	156	P16INK4A, MTS1, multiple tumor suppressor; cyclin	99.93
3jxi_A	260	Vanilloid receptor-related osmotically activated p	99.93
2rfa_A	232	Transient receptor potential cation channel subfa	99.93
2vge_A	229	RELA-associated inhibitor; iaspp, nucleus, apoptos	99.93
1k1a_A	241	B-cell lymphoma 3-encoded protein; BCL-3, NF-kappa	99.93
1yyh_A	253	HN1;, notch 1, ankyrin domain; ankyrin repeats, ce	99.93
3aji_A	231	26S proteasome non-ATPase regulatory subunit 10; g	99.93
2rfa_A	232	Transient receptor potential cation channel subfa	99.93
3ehr_A	222	Osteoclast-stimulating factor 1; beta barrel, heli	99.93
4hbd_A	276	KN motif and ankyrin repeat domain-containing Pro;	99.93
2f8y_A	223	Notch homolog 1, translocation-associated (drosoph	99.93
3t8k_A	186	Uncharacterized protein; structural genomics, PSI-	99.92
1ikn_D	236	Protein (I-kappa-B-alpha), protein (NF-kappa-B P50	99.92
2pnn_A	273	Transient receptor potential cation channel subfa	99.92
2dzn_A	228	Probable 26S proteasome regulatory subunit P28; an	99.92
3v31_A	167	Ankyrin repeat family A protein 2; structural geno	99.92
3aji_A	231	26S proteasome non-ATPase regulatory subunit 10; g	99.92
2xai_A	261	ASB-9, ankyrin repeat and SOCS box protein 9; tran	99.92
2f8y_A	223	Notch homolog 1, translocation-associated (drosoph	99.92
3deo_A	183	Signal recognition particle 43 kDa protein; chloro	99.92
1oy3_D	282	Transcription factor inhibitor I-kappa-B-beta; pro	99.92
2dzn_A	228	Probable 26S proteasome regulatory subunit P28; an	99.92
1ycs_B	239	53BP2, P53BP2; ankyrin repeats, SH3, tumor suppres	99.92
2etb_A	256	Transient receptor potential cation channel subfam	99.92
1s70_B	299	130 kDa myosin-binding subunit of smooth muscle my	99.92
2y1l_E	169	Darpin-8.4; hydrolase-inhibitor complex, DEVD darp	99.92
1yyh_A	253	HN1;, notch 1, ankyrin domain; ankyrin repeats, ce	99.92
3kea_A	285	K1L; tropism, ANK repeat, viral protein; 2.30A {Va	99.92
3hra_A	201	Ankyrin repeat family protein; structural protein;	99.92
3b7b_A	237	Euchromatic histone-lysine N-methyltransferase 1;	99.92
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	99.92
3ui2_A	244	Signal recognition particle 43 kDa protein, chlor;	99.92
3hra_A	201	Ankyrin repeat family protein; structural protein;	99.91
1ihb_A	162	P18-INK4C(INK6), cyclin-dependent kinase 6 inhibit	99.91
1n0q_A	93	3ANK, 3 ankyrin repeats; structural protein; 1.26A	99.91
3d9h_A	285	CDNA FLJ77766, highly similar to HOMO sapiens anky	99.91
1oy3_D	282	Transcription factor inhibitor I-kappa-B-beta; pro	99.91
4hbd_A	276	KN motif and ankyrin repeat domain-containing Pro;	99.91
2etb_A	256	Transient receptor potential cation channel subfam	99.91
1awc_B	153	Protein (GA binding protein beta 1); complex (tran	99.91
1ikn_D	236	Protein (I-kappa-B-alpha), protein (NF-kappa-B P50	99.91
1k1a_A	241	B-cell lymphoma 3-encoded protein; BCL-3, NF-kappa	99.91
3d9h_A	285	CDNA FLJ77766, highly similar to HOMO sapiens anky	99.91
3b7b_A	237	Euchromatic histone-lysine N-methyltransferase 1;	99.91
3twr_A	165	Tankyrase-2; ankyrin repeat, protein-protein inter	99.91
3f6q_A	179	Integrin-linked protein kinase; ILK, integrin-link	99.91
3v30_A	172	DNA-binding protein rfxank; structural genomics co	99.9
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	99.9
2xai_A	261	ASB-9, ankyrin repeat and SOCS box protein 9; tran	99.9
1bd8_A	156	P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyr	99.9
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	99.9
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	99.9
1sw6_A	327	Regulatory protein SWI6; transcription regulation,	99.9
2pnn_A	273	Transient receptor potential cation channel subfa	99.9
2l6b_A	115	NR1C; ankyrin, consensus, repeat protein, ising mo	99.9
1s70_B	299	130 kDa myosin-binding subunit of smooth muscle my	99.9
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	99.9
1wdy_A	285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	99.9
1wdy_A	285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	99.89
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	99.89
1bi7_B	156	P16INK4A, MTS1, multiple tumor suppressor; cyclin	99.89
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	99.89
3jxi_A	260	Vanilloid receptor-related osmotically activated p	99.89
3kea_A	285	K1L; tropism, ANK repeat, viral protein; 2.30A {Va	99.89
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	99.89
1dcq_A	278	PYK2-associated protein beta; zinc-binding module,	99.88
2b0o_E	301	UPLC1; arfgap, structural genomics, structural gen	99.88
1ycs_B	239	53BP2, P53BP2; ankyrin repeats, SH3, tumor suppres	99.88
2jab_A	136	H10-2-G3; HER2, darpin, ankyrin repeat protein, me	99.88
3jue_A	368	Arfgap with coiled-coil, ANK repeat and PH domain	99.88
3eu9_A	240	Huntingtin-interacting protein 14; epigenetics, an	99.88
2b0o_E	301	UPLC1; arfgap, structural genomics, structural gen	99.88
2vge_A	229	RELA-associated inhibitor; iaspp, nucleus, apoptos	99.88
1d9s_A	136	Cyclin-dependent kinase 4 inhibitor B; helix-turn-	99.88
3eu9_A	240	Huntingtin-interacting protein 14; epigenetics, an	99.87
1n0r_A	126	4ANK, 4 ankyrin repeats; structural protein; 1.50A	99.87
3lvq_E	497	ARF-GAP with SH3 domain, ANK repeat and PH domain	99.87
1dcq_A	278	PYK2-associated protein beta; zinc-binding module,	99.86
3t8k_A	186	Uncharacterized protein; structural genomics, PSI-	99.86
4g8k_A	337	2-5A-dependent ribonuclease; ankyrin-repeat domain	99.85
2zgd_A	110	3 repeat synthetic ankyrin; ankyrin repeat, hydrox	99.85
4g8k_A	337	2-5A-dependent ribonuclease; ankyrin-repeat domain	99.84
3lvq_E	497	ARF-GAP with SH3 domain, ANK repeat and PH domain	99.84
1n0q_A	93	3ANK, 3 ankyrin repeats; structural protein; 1.26A	99.83
3ehr_A	222	Osteoclast-stimulating factor 1; beta barrel, heli	99.81
3jue_A	368	Arfgap with coiled-coil, ANK repeat and PH domain	99.81
3deo_A	183	Signal recognition particle 43 kDa protein; chloro	99.81
3aaa_C	123	Myotrophin, protein V-1; actin capping protein, ba	99.8
3ui2_A	244	Signal recognition particle 43 kDa protein, chlor;	99.8
2aja_A	376	Ankyrin repeat family protein; NESG, Q5ZSV0, struc	99.8
3c5r_A	137	BARD-1, BRCA1-associated ring domain protein 1; an	99.79
2aja_A	376	Ankyrin repeat family protein; NESG, Q5ZSV0, struc	99.78
2zgd_A	110	3 repeat synthetic ankyrin; ankyrin repeat, hydrox	99.76
2l6b_A	115	NR1C; ankyrin, consensus, repeat protein, ising mo	99.76
1sw6_A	327	Regulatory protein SWI6; transcription regulation,	99.75

>4gpm_A Engineered protein OR264; de novo protein, structural genomics, PSI-biology, northeast structural genomics consortium, NESG; 2.00A {Synthetic construct} PDB: 4gmr_A

Probab=99.97  E-value=4.8e-30  Score=186.09  Aligned_cols=149  Identities=36%  Similarity=0.537  Sum_probs=132.4

Q ss_pred             hccchhHHHHHHhhHHHhhhhcccCCCCChHHHHHHHcCCHHHHHHHHHCCCCccccccCCCCCCCcHHHHHHHCCcHHH
Q 028370            8 EQLGPFTLQRKASRKRFFRSVIDTDDRGWTPLHIGARKGDIKLVKQLLDEGMDVNVAAWGPKSKGVTPLHLAAQGGHLEV   87 (210)
Q Consensus         8 ~~~~~~~~~~~~~~~~~~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~g~t~L~~A~~~~~~~~   87 (210)
                      ...|.+..+......  ..+++.+|..|+||||+|+..++.++++.|++.|++++..    +..|+||||+|+..|+.++
T Consensus        12 a~~G~~~~v~~Ll~~--Gadvn~~d~~g~t~l~~a~~~~~~~~~~~ll~~gad~~~~----d~~g~TpLh~A~~~g~~~~   85 (169)
T 4gpm_A           12 AENGNKDRVKDLIEN--GADVNASDSDGRTPLHHAAENGHKEVVKLLISKGADVNAK----DSDGRTPLHHAAENGHKEV   85 (169)
T ss_dssp             HHTTCHHHHHHHHHT--TCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCC----CTTSCCHHHHHHHTTCHHH
T ss_pred             HHcCCHHHHHHHHHC--CCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHhcccchhhh----ccCCCCHHHHHHHcCCHHH
Confidence            345666666666554  4678899999999999999999999999999999999988    9999999999999999999


Q ss_pred             HHHHHHcCCCCCcccCCCCCChHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCCCCCcccccccchHHHHHHHHHhhhhh
Q 028370           88 MDVLLERGADIDARTKGACGWTPLHTAAKERKKEAVRFLIENGAFLPDDINDSRFNPPLHYCPSLEWAYEEMMRFQRESF  167 (210)
Q Consensus        88 v~~Ll~~g~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~~~l~~~~  167 (210)
                      +++|++.|++++.++.+  |+||||+|+..|+.+++++|+++|+++  +.+|..|.|||++|+..  +..+++++|.+..
T Consensus        86 v~~Ll~~gadvn~~d~~--G~TpLh~A~~~g~~~~v~~Ll~~gad~--~~~d~~G~TpL~~A~~~--g~~~iv~~Ll~~G  159 (169)
T 4gpm_A           86 VKLLISKGADVNAKDSD--GRTPLHHAAENGHKEVVKLLISKGADV--NTSDSDGRTPLDLAREH--GNEEVVKLLEKQG  159 (169)
T ss_dssp             HHHHHHTTCCTTCCCTT--SCCHHHHHHHTTCHHHHHHHHHTTCCT--TCCCTTSCCHHHHHHHT--TCHHHHHHHHTC-
T ss_pred             HHHHHHCcCCCCCCCCC--CCCHHHHHHHcCCHHHHHHHHHcCCCc--cccCCCCCCHHHHHHHc--CCHHHHHHHHHCC
Confidence            99999999999999887  999999999999999999999999965  89999999999999954  4578999888764


Q ss_pred             h
Q 028370          168 S  168 (210)
Q Consensus       168 ~  168 (210)
                      .
T Consensus       160 A  160 (169)
T 4gpm_A          160 G  160 (169)
T ss_dssp             -
T ss_pred             C
Confidence            3

>3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat, helix, extended loop, four repeat, PR ANK repeat, disease mutation, metal-binding; 2.00A {Homo sapiens} SCOP: k.37.1.1

Probab=99.95  E-value=1.8e-27  Score=166.34  Aligned_cols=127  Identities=34%  Similarity=0.466  Sum_probs=114.9

Q ss_pred             ccCCCCChHHHHHHHcCCHHHHHHHHHCCCCccccccCCCCCCCcHHHHHHHCCcHHHHHHHHHcCCCCCcccCCCCCCh
Q 028370           30 DTDDRGWTPLHIGARKGDIKLVKQLLDEGMDVNVAAWGPKSKGVTPLHLAAQGGHLEVMDVLLERGADIDARTKGACGWT  109 (210)
Q Consensus        30 ~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~~g~t  109 (210)
                      .+|..|.||||+|+..|+.+++++|++.|++++..    +..|.||||+|+..|+.+++++|++.|++++..+..  |.|
T Consensus         5 ~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~----~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~--g~t   78 (137)
T 3c5r_A            5 FTNHRGETLLHIASIKGDIPSVEYLLQNGSDPNVK----DHAGWTPLHEACNHGHLKVVELLLQHKALVNTTGYQ--NDS   78 (137)
T ss_dssp             CCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCSCCC----CTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCGG--GCC
T ss_pred             CcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCcC----CCCCCCHHHHHHHcCCHHHHHHHHHcCCcccCcCCC--CCC
Confidence            57899999999999999999999999999999988    899999999999999999999999999999988877  999


Q ss_pred             HHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCCCCCcccccccchHHHHHHHHHhhhh
Q 028370          110 PLHTAAKERKKEAVRFLIENGAFLPDDINDSRFNPPLHYCPSLEWAYEEMMRFQRES  166 (210)
Q Consensus       110 pL~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~~~l~~~  166 (210)
                      |||+|+..|+.+++++|+++|+++  +.+|..|.||+++|+  ..+..++++++...
T Consensus        79 ~L~~A~~~~~~~~v~~Ll~~ga~~--~~~~~~g~tpl~~A~--~~~~~~~l~~l~~~  131 (137)
T 3c5r_A           79 PLHDAAKNGHVDIVKLLLSYGASR--NAVNIFGLRPVDYTD--DESMKSLLLLPEKN  131 (137)
T ss_dssp             HHHHHHHTTCHHHHHHHHHTTCCT--TCCCTTSCCGGGGCC--CHHHHHHHSCC---
T ss_pred             HHHHHHHcCCHHHHHHHHHcCCCC--CCCCCCCCCHHHHHh--hccHHHHHhhcccc
Confidence            999999999999999999999965  899999999999998  44556666655543

>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A

Probab=99.95  E-value=1.4e-26  Score=168.87  Aligned_cols=149  Identities=28%  Similarity=0.334  Sum_probs=130.3

Q ss_pred             chhHHHHHHhhHHHhhhhcccCCCCChHHHHHHHcCCHHHHHHHHHCCCCccccccCCCCCCCcHHHHHHHCCcHHHHHH
Q 028370           11 GPFTLQRKASRKRFFRSVIDTDDRGWTPLHIGARKGDIKLVKQLLDEGMDVNVAAWGPKSKGVTPLHLAAQGGHLEVMDV   90 (210)
Q Consensus        11 ~~~~~~~~~~~~~~~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~   90 (210)
                      |.+..+..... ....+++.+|..|.||||+|+..|+.+++++|++.|++++..    +..|.||||+|+..|+.+++++
T Consensus        16 g~~~~v~~ll~-~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~----~~~g~t~L~~A~~~~~~~~v~~   90 (179)
T 3f6q_A           16 GNAVAVRLWLD-NTENDLNQGDDHGFSPLHWACREGRSAVVEMLIMRGARINVM----NRGDDTPLHLAASHGHRDIVQK   90 (179)
T ss_dssp             TCHHHHHHHHH-CTTSCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCC----CTTCCCHHHHHHHTTCHHHHHH
T ss_pred             CCHHHHHHHHh-cCcccccccCCCCCCHHHHHHHcCcHHHHHHHHHcCCCCCCc----CCCCCCHHHHHHHcCCHHHHHH
Confidence            44444444333 334567889999999999999999999999999999999988    8999999999999999999999


Q ss_pred             HHHcCCCCCcccCCCCCChHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCCCCCcccccccchHHHHHHHHHhhhhhhcC
Q 028370           91 LLERGADIDARTKGACGWTPLHTAAKERKKEAVRFLIENGAFLPDDINDSRFNPPLHYCPSLEWAYEEMMRFQRESFSAG  170 (210)
Q Consensus        91 Ll~~g~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~~~l~~~~~~~  170 (210)
                      |+++|++++..+..  |.||||+|+..|+.+++++|+++|+++  +.+|..|.||+++|+  ..+..++++++.+.....
T Consensus        91 Ll~~g~~~~~~d~~--g~t~L~~A~~~~~~~~v~~Ll~~ga~~--~~~~~~g~tpl~~A~--~~~~~~~~~~L~~~g~~~  164 (179)
T 3f6q_A           91 LLQYKADINAVNEH--GNVPLHYACFWGQDQVAEDLVANGALV--SICNKYGEMPVDKAK--APLRELLRERAEKMGQNL  164 (179)
T ss_dssp             HHHTTCCTTCCCTT--SCCHHHHHHHTTCHHHHHHHHHTTCCS--SBCCTTSCCGGGGSC--HHHHHHHHHHHHHTTCCC
T ss_pred             HHHcCCCCCccCCC--CCCHHHHHHHcCCHHHHHHHHHCCCCc--chhccCCCCcHHHHH--HHHHHHHHHHHHHhhcCc
Confidence            99999999998877  999999999999999999999999965  899999999999998  456688888888765443

>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin repeat, signaling protein; NMR {Mus musculus} SCOP: i.11.1.1

Probab=99.95  E-value=1.2e-27  Score=167.19  Aligned_cols=130  Identities=24%  Similarity=0.350  Sum_probs=118.4

Q ss_pred             hhcccCCCCChHHHHHHHcCCHHHHHHHHHCCCCccccccCCCCCCCcHHHHHHHCCcHHHHHHHHHcCCCCCcccCCCC
Q 028370           27 SVIDTDDRGWTPLHIGARKGDIKLVKQLLDEGMDVNVAAWGPKSKGVTPLHLAAQGGHLEVMDVLLERGADIDARTKGAC  106 (210)
Q Consensus        27 ~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~~  106 (210)
                      +++.+|..|.||||+|+..|+.+++++|+++|++++..    +..|+||||+|+. ++.+++++|++.|++++..+... 
T Consensus         4 ~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~----~~~g~t~L~~A~~-~~~~~v~~Ll~~g~~~~~~~~~~-   77 (136)
T 1d9s_A            4 GIHMLGGSSDAGLATAAARGQVETVRQLLEAGADPNAL----NRFGRRPIQVMMM-GSAQVAELLLLHGAEPNCADPAT-   77 (136)
T ss_dssp             CCSCCCCCCSCHHHHHHHTTCHHHHHHHHHTTCCTTCC----CTTCCTTTTTSTT-SCHHHHHHHHHHTCCSSCCBTTT-
T ss_pred             CccCCCCCCccHHHHHHHcCCHHHHHHHHHcCCCcCCc----CCCCCCHHHHHHc-CCHHHHHHHHHCCCCCCCcCCCC-
Confidence            56789999999999999999999999999999999988    8999999999999 99999999999999998876542 


Q ss_pred             CChHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCCCCCcccccccchHHHHHHHHHhhhh
Q 028370          107 GWTPLHTAAKERKKEAVRFLIENGAFLPDDINDSRFNPPLHYCPSLEWAYEEMMRFQRES  166 (210)
Q Consensus       107 g~tpL~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~~~l~~~  166 (210)
                      |.||||+|+..|+.+++++|+++|+++  +.+|..|.|||++|+..  +..+++++|.+.
T Consensus        78 g~t~L~~A~~~~~~~~v~~Ll~~ga~~--~~~d~~g~tpl~~A~~~--~~~~~~~~Ll~~  133 (136)
T 1d9s_A           78 LTRPVHDAAREGFLDTLVVLHRAGARL--DVCDAWGRLPVDLAEEQ--GHRDIARYLHAA  133 (136)
T ss_dssp             TBCHHHHHHHHTCHHHHHHHHHTCCCC--CCCSSSSSCHHHHHHHH--TCHHHHHHHHHH
T ss_pred             CCCHHHHHHHcCCHHHHHHHHHcCCCC--CccCCCCCCHHHHHHHc--CCHHHHHHHHHc
Confidence            789999999999999999999999965  89999999999999944  457888888764

>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A

Probab=99.95  E-value=6.2e-27  Score=169.56  Aligned_cols=149  Identities=28%  Similarity=0.387  Sum_probs=130.2

Q ss_pred             cchhHHHHHHhhHHHhhhhcccCCCCChHHHHHHHcCCHHHHHHHHHCCCCccccccCCCCCCCcHHHHHHHCCcHHHHH
Q 028370           10 LGPFTLQRKASRKRFFRSVIDTDDRGWTPLHIGARKGDIKLVKQLLDEGMDVNVAAWGPKSKGVTPLHLAAQGGHLEVMD   89 (210)
Q Consensus        10 ~~~~~~~~~~~~~~~~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~   89 (210)
                      .|.+......... ....++.+|..|.||||+|+..|+.+++++|+++|++++..    +..|.||||+|+..|+.++++
T Consensus        12 ~g~~~~v~~ll~~-~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~----~~~g~t~L~~A~~~~~~~~v~   86 (172)
T 3v30_A           12 QGELDQLKEHLRK-GDNLVNKPDERGFTPLIWASAFGEIETVRFLLEWGADPHIL----AKERESALSLASTGGYTDIVG   86 (172)
T ss_dssp             TTCHHHHHHHHTT-CSGGGGCCCTTSCCHHHHHHHTTCHHHHHHHHHHTCCTTCC----CTTCCCHHHHHHHTTCHHHHH
T ss_pred             cCCHHHHHHHHHc-CcccccCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCchhh----cccCCCHHHHHHHCCCHHHHH
Confidence            3555555554443 34447788999999999999999999999999999999988    899999999999999999999


Q ss_pred             HHHHcCCCCCcccCCCCCChHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCCCCCcccccccchHHHHHHHHHhhhhhhc
Q 028370           90 VLLERGADIDARTKGACGWTPLHTAAKERKKEAVRFLIENGAFLPDDINDSRFNPPLHYCPSLEWAYEEMMRFQRESFSA  169 (210)
Q Consensus        90 ~Ll~~g~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~~~l~~~~~~  169 (210)
                      +|++.|++++..+..  |.||||+|+..|+.+++++|+++|+++  +.++..|.||+++|+..  +..+++++|.+....
T Consensus        87 ~Ll~~g~~~~~~~~~--g~t~L~~A~~~~~~~~v~~Ll~~ga~~--~~~~~~g~t~l~~A~~~--~~~~~~~~L~~~~~~  160 (172)
T 3v30_A           87 LLLERDVDINIYDWN--GGTPLLYAVRGNHVKCVEALLARGADL--TTEADSGYTPMDLAVAL--GYRKVQQVIENHILK  160 (172)
T ss_dssp             HHHTTTCCTTCCCTT--SCCHHHHHHHTTCHHHHHHHHHTTCCT--TCCCTTSCCHHHHHHHH--TCHHHHHHHHHHHHH
T ss_pred             HHHHcCCCCCCCCCC--CCCHHHHHHHcCCHHHHHHHHHcCCCc--cccCCCCCCHHHHHHHh--CcHHHHHHHHHHHHH
Confidence            999999999988877  999999999999999999999999965  88999999999999944  457888888877554

>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} SCOP: d.211.1.0 PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S*

Probab=99.95  E-value=2.3e-26  Score=165.48  Aligned_cols=144  Identities=29%  Similarity=0.417  Sum_probs=124.1

Q ss_pred             chhHHHHHHhhHHHhhhhcccCCCCChHHHHHHHcCCHHHHHHHHHCCCCccccccCCCCCCCcHHHHHHHCCcHHHHHH
Q 028370           11 GPFTLQRKASRKRFFRSVIDTDDRGWTPLHIGARKGDIKLVKQLLDEGMDVNVAAWGPKSKGVTPLHLAAQGGHLEVMDV   90 (210)
Q Consensus        11 ~~~~~~~~~~~~~~~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~   90 (210)
                      |.+..+...... .....+..+..|.||||+|+..|+.+++++|+++|++++..    +..|.||||+|+..|+.+++++
T Consensus        19 g~~~~v~~ll~~-~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~----~~~g~t~L~~A~~~~~~~~v~~   93 (165)
T 3twr_A           19 GDVETVKKLCTV-QSVNCRDIEGRQSTPLHFAAGYNRVSVVEYLLQHGADVHAK----DKGGLVPLHNACSYGHYEVAEL   93 (165)
T ss_dssp             TCHHHHHHHCCT-TTTTCCCTTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCC----CTTSCCHHHHHHHTTCHHHHHH
T ss_pred             CCHHHHHHHHHc-CCCCccccccCCCCHHHHHHHcChHHHHHHHHhcCCCCCcc----CCCCCCHHHHHHHcCcHHHHHH
Confidence            344444443332 23455667888999999999999999999999999999988    8999999999999999999999


Q ss_pred             HHHcCCCCCcccCCCCCChHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCCCCCcccccccchHHHHHHHHHhhhh
Q 028370           91 LLERGADIDARTKGACGWTPLHTAAKERKKEAVRFLIENGAFLPDDINDSRFNPPLHYCPSLEWAYEEMMRFQRES  166 (210)
Q Consensus        91 Ll~~g~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~~~l~~~  166 (210)
                      |++.|++++..+..  |.||||+|+..|+.+++++|+++|+++  +.+|..|.||+++|..   +..+++++|.+.
T Consensus        94 Ll~~g~~~~~~~~~--g~t~L~~A~~~~~~~~v~~Ll~~ga~~--~~~~~~g~t~l~~a~~---~~~~i~~~L~~~  162 (165)
T 3twr_A           94 LVKHGAVVNVADLW--KFTPLHEAAAKGKYEICKLLLQHGADP--TKKNRDGNTPLDLVKD---GDTDIQDLLRGD  162 (165)
T ss_dssp             HHHTTCCTTCCCTT--CCCHHHHHHHTTCHHHHHHHHHTTCCT--TCCCTTSCCTGGGSCT---TCHHHHHHHHTC
T ss_pred             HHhCCCCCCCcCCC--CCCHHHHHHHcCCHHHHHHHHHcCCCC--cccCCCCCChhHhHhc---CChHHHHHHhhc
Confidence            99999999998877  999999999999999999999999965  8999999999999875   235888888754

>4gpm_A Engineered protein OR264; de novo protein, structural genomics, PSI-biology, northeast structural genomics consortium, NESG; 2.00A {Synthetic construct} PDB: 4gmr_A

Probab=99.95  E-value=7.3e-27  Score=169.29  Aligned_cols=122  Identities=39%  Similarity=0.587  Sum_probs=113.4

Q ss_pred             hHHHHHHHcCCHHHHHHHHHCCCCccccccCCCCCCCcHHHHHHHCCcHHHHHHHHHcCCCCCcccCCCCCChHHHHHHh
Q 028370           37 TPLHIGARKGDIKLVKQLLDEGMDVNVAAWGPKSKGVTPLHLAAQGGHLEVMDVLLERGADIDARTKGACGWTPLHTAAK  116 (210)
Q Consensus        37 t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~~g~tpL~~A~~  116 (210)
                      ++|+.|++.|+.++|+.|+++|++++..    |..|+||||+|+..++.+++++|++.|++++.++.+  |.||||+|+.
T Consensus         6 ~~L~~Aa~~G~~~~v~~Ll~~Gadvn~~----d~~g~t~l~~a~~~~~~~~~~~ll~~gad~~~~d~~--g~TpLh~A~~   79 (169)
T 4gpm_A            6 KRLIEAAENGNKDRVKDLIENGADVNAS----DSDGRTPLHHAAENGHKEVVKLLISKGADVNAKDSD--GRTPLHHAAE   79 (169)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHTTCCTTCC----CTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTT--SCCHHHHHHH
T ss_pred             HHHHHHHHcCCHHHHHHHHHCCCCCCCc----CCCCCCHHHHHHHcCCHHHHHHHHhcccchhhhccC--CCCHHHHHHH
Confidence            4799999999999999999999999988    999999999999999999999999999999999887  9999999999


Q ss_pred             cCCHHHHHHHHHcCCCCCCCCCCCCCCCcccccccchHHHHHHHHHhhhhhh
Q 028370          117 ERKKEAVRFLIENGAFLPDDINDSRFNPPLHYCPSLEWAYEEMMRFQRESFS  168 (210)
Q Consensus       117 ~g~~~~v~~Ll~~g~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~~~l~~~~~  168 (210)
                      .|+.+++++|+++|+++  +.+|..|.||||+|+..  +..+++++|.+...
T Consensus        80 ~g~~~~v~~Ll~~gadv--n~~d~~G~TpLh~A~~~--g~~~~v~~Ll~~ga  127 (169)
T 4gpm_A           80 NGHKEVVKLLISKGADV--NAKDSDGRTPLHHAAEN--GHKEVVKLLISKGA  127 (169)
T ss_dssp             TTCHHHHHHHHHTTCCT--TCCCTTSCCHHHHHHHT--TCHHHHHHHHHTTC
T ss_pred             cCCHHHHHHHHHCcCCC--CCCCCCCCCHHHHHHHc--CCHHHHHHHHHcCC
Confidence            99999999999999966  88999999999999954  45789999887643

>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A

Probab=99.95  E-value=1.1e-26  Score=167.55  Aligned_cols=148  Identities=24%  Similarity=0.348  Sum_probs=128.7

Q ss_pred             cchhHHHHHHhhHHHhhhhcccCCCCChHHHHHHHcCCHHHHHHHHHCCCCccccccCCCCCCCcHHHHHHHCCcHHHHH
Q 028370           10 LGPFTLQRKASRKRFFRSVIDTDDRGWTPLHIGARKGDIKLVKQLLDEGMDVNVAAWGPKSKGVTPLHLAAQGGHLEVMD   89 (210)
Q Consensus        10 ~~~~~~~~~~~~~~~~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~   89 (210)
                      .|.+.........  ..+++.+|..|.||||+|+..|+.+++++|+++|++++..    +..|.||||+|+..|+.++++
T Consensus        13 ~g~~~~v~~ll~~--~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~----~~~g~t~L~~A~~~~~~~~v~   86 (167)
T 3v31_A           13 QGEMLYLATRIEQ--ENVINHTDEEGFTPLMWAAAHGQIAVVEFLLQNGADPQLL----GKGRESALSLACSKGYTDIVK   86 (167)
T ss_dssp             TTCHHHHHHHHHH--SSCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCC----CTTCCCHHHHHHHHTCHHHHH
T ss_pred             CCCHHHHHHHHHc--CCCcCCCCCCCCCHHHHHHHCCCHHHHHHHHHcCCCCCCc----CCCCCcHHHHHHHcCCHHHHH
Confidence            3555555544443  3557889999999999999999999999999999999988    899999999999999999999


Q ss_pred             HHHHcCCCCCcccCCCCCChHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCCCCCcccccccchHHHHHHHHHhhhhhhc
Q 028370           90 VLLERGADIDARTKGACGWTPLHTAAKERKKEAVRFLIENGAFLPDDINDSRFNPPLHYCPSLEWAYEEMMRFQRESFSA  169 (210)
Q Consensus        90 ~Ll~~g~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~~~l~~~~~~  169 (210)
                      +|++.|++++..+..  |.||||+|+..|+.+++++|+++|+++  +.++..|.||+++|+.  .+..+++++|.+....
T Consensus        87 ~Ll~~g~~~~~~~~~--g~t~L~~A~~~~~~~~v~~Ll~~g~~~--~~~~~~g~t~l~~A~~--~~~~~~~~~L~~~~~~  160 (167)
T 3v31_A           87 MLLDCGVDVNEYDWN--GGTPLLYAVHGNHVKCVKMLLESGADP--TIETDSGYNSMDLAVA--LGYRSVQQVIESHLLK  160 (167)
T ss_dssp             HHHHHTCCTTCCCTT--SCCHHHHHHHTTCHHHHHHHHHTTCCT--TCCCTTSCCHHHHHHH--HTCHHHHHHHHHHHHH
T ss_pred             HHHHCCCCCCcCCCC--CCCHHHHHHHcCCHHHHHHHHHcCCCC--CCcCCCCCCHHHHHHH--cCcHHHHHHHHHHHHH
Confidence            999999999988877  999999999999999999999999965  8899999999999994  4457888888776543

>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C*

Probab=99.95  E-value=1e-26  Score=168.16  Aligned_cols=144  Identities=36%  Similarity=0.511  Sum_probs=119.5

Q ss_pred             chhHHHHHHhhHHHhhhhcccCCCCChHHHHHHHcCCHHHHHHHHHCCCCccccccCCCCCCCcHHHHHHHCCcHHHHHH
Q 028370           11 GPFTLQRKASRKRFFRSVIDTDDRGWTPLHIGARKGDIKLVKQLLDEGMDVNVAAWGPKSKGVTPLHLAAQGGHLEVMDV   90 (210)
Q Consensus        11 ~~~~~~~~~~~~~~~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~   90 (210)
                      |....+......  ..+++.+|..|.||||+|+..|+.+++++|+++|++++..    +..|.||||+|+..|+.+++++
T Consensus        25 g~~~~v~~Ll~~--g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~----~~~g~t~L~~A~~~~~~~~~~~   98 (169)
T 2y1l_E           25 GRDDEVRILMAN--GADVNAEDASGWTPLHLAAFNGHLEIVEVLLKNGADVNAV----DHAGMTPLRLAALFGHLEIVEV   98 (169)
T ss_dssp             TCHHHHHHHHHT--TCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCC----CTTSCCHHHHHHHTTCHHHHHH
T ss_pred             CCHHHHHHHHHC--CCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCcc----CCCCCCHHHHHHHcCCHHHHHH
Confidence            444444433332  3456778889999999999999999999999999998887    8889999999999999999999


Q ss_pred             HHHcCCCCCcccCCCCCChHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCCCCCcccccccchHHHHHHHHHhhhh
Q 028370           91 LLERGADIDARTKGACGWTPLHTAAKERKKEAVRFLIENGAFLPDDINDSRFNPPLHYCPSLEWAYEEMMRFQRES  166 (210)
Q Consensus        91 Ll~~g~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~~~l~~~  166 (210)
                      |++.|++++..+..  |.||||+|+..|+.+++++|+++|+++  +.+|..|.||+++|+..  +..+++++|.+.
T Consensus        99 Ll~~g~~~~~~~~~--g~t~L~~A~~~~~~~~v~~Ll~~g~~~--~~~~~~g~t~l~~A~~~--~~~~~~~~L~~~  168 (169)
T 2y1l_E           99 LLKNGADVNANDME--GHTPLHLAAMFGHLEIVEVLLKNGADV--NAQDKFGKTAFDISIDN--GNEDLAEILQKL  168 (169)
T ss_dssp             HHHTTCCTTCCCTT--SCCHHHHHHHTTCHHHHHHHHHTTCCT--TCCCTTSCCHHHHHHHT--TCHHHHHHHHTC
T ss_pred             HHHcCCCCCCCCCC--CCCHHHHHHHcCCHHHHHHHHHcCCCC--CCcCCCCCCHHHHHHHh--CCHHHHHHHHHc
Confidence            99999999888777  899999999999999999999999965  88899999999999854  347888877653

>1awc_B Protein (GA binding protein beta 1); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: d.211.1.1

Probab=99.94  E-value=9.3e-27  Score=165.67  Aligned_cols=140  Identities=28%  Similarity=0.382  Sum_probs=121.0

Q ss_pred             chhHHHHHHhhHHHhhhhcccCCCCChHHHHHHHcCCHHHHHHHHHCCCCccccccCCCCCCCcHHHHHHHCCcHHHHHH
Q 028370           11 GPFTLQRKASRKRFFRSVIDTDDRGWTPLHIGARKGDIKLVKQLLDEGMDVNVAAWGPKSKGVTPLHLAAQGGHLEVMDV   90 (210)
Q Consensus        11 ~~~~~~~~~~~~~~~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~   90 (210)
                      |....+........  +. ..|..|.||||+|+..|+.+++++|++.|++++..    +..|.||||+|+..|+.+++++
T Consensus        13 g~~~~v~~Ll~~g~--~~-~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~----~~~g~t~L~~A~~~~~~~~v~~   85 (153)
T 1awc_B           13 GQDDEVRILMANGA--PF-TTDWLGTSPLHLAAQYGHFSTTEVLLRAGVSRDAR----TKVDRTPLHMAASEGHANIVEV   85 (153)
T ss_dssp             TCHHHHHHHHHHTC--CC-CCCTTCCCHHHHHHHHTCHHHHHHHHTTTCCTTCC----CTTCCCHHHHHHHHTCHHHHHH
T ss_pred             CCHHHHHHHHHcCC--CC-CcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCC----CCCCCCHHHHHHHcChHHHHHH
Confidence            44444444444332  22 36888999999999999999999999999999988    8999999999999999999999


Q ss_pred             HHHcCCCCCcccCCCCCChHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCCCCCcccccccchHHHHHHHHHh
Q 028370           91 LLERGADIDARTKGACGWTPLHTAAKERKKEAVRFLIENGAFLPDDINDSRFNPPLHYCPSLEWAYEEMMRFQ  163 (210)
Q Consensus        91 Ll~~g~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~~~l  163 (210)
                      |+++|++++..+..  |.||||+|+..|+.+++++|+++|+++  +.+|..|.||+++|+..  +..+++++|
T Consensus        86 Ll~~g~~~~~~~~~--g~t~L~~A~~~~~~~~v~~Ll~~ga~~--~~~~~~g~t~l~~A~~~--~~~~i~~~L  152 (153)
T 1awc_B           86 LLKHGADVNAKDML--KMTALHWATEHNHQEVVELLIKYGADV--HTQSKFCKTAFDISIDN--GNEDLAEIL  152 (153)
T ss_dssp             HHTTTCCTTCCCTT--SCCHHHHHHHTTCHHHHHHHHHTTCCT--TCCCTTSCCHHHHHHHT--TCHHHHHHH
T ss_pred             HHHcCCCCCCCCCC--CCCHHHHHHHcCCHHHHHHHHHcCCCc--cccCCCCCCHHHHHHHc--CCHHHHHHh
Confidence            99999999998877  999999999999999999999999966  88999999999999954  446777766

>2jab_A H10-2-G3; HER2, darpin, ankyrin repeat protein, membrane protein, human epidermal growth factor receptor 2, de novo protein; 1.70A {} PDB: 3hg0_D 2xzt_G 2xzd_G 2y0b_G 2v4h_C

Probab=99.94  E-value=6.1e-27  Score=163.56  Aligned_cols=126  Identities=32%  Similarity=0.414  Sum_probs=114.6

Q ss_pred             cCCCCChHHHHHHHcCCHHHHHHHHHCCCCccccccCCCCCCCcHHHHHHHCCcHHHHHHHHHcCCCCCcccCCCCCChH
Q 028370           31 TDDRGWTPLHIGARKGDIKLVKQLLDEGMDVNVAAWGPKSKGVTPLHLAAQGGHLEVMDVLLERGADIDARTKGACGWTP  110 (210)
Q Consensus        31 ~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~~g~tp  110 (210)
                      ....|.||||+|+..|+.+++++|+++|++++..    +..|.||||+|+..++.+++++|++.|++++..+..  |.||
T Consensus        10 ~~~~~~t~l~~A~~~g~~~~v~~Ll~~g~~~~~~----~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~d~~--g~t~   83 (136)
T 2jab_A           10 HGSDLGKKLLEAARAGQDDEVRILMANGADVNAK----DEYGLTPLYLATAHGHLEIVEVLLKNGADVNAVDAI--GFTP   83 (136)
T ss_dssp             --CHHHHHHHHHHHHTCHHHHHHHHHTTCCTTCC----CTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTT--CCCH
T ss_pred             ccccccHHHHHHHHhCCHHHHHHHHHcCCCCCCc----CCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCcCCCC--CCCH
Confidence            5566889999999999999999999999999988    899999999999999999999999999999988877  9999


Q ss_pred             HHHHHhcCCHHHHHHHHHcCCCCCCCCCCCCCCCcccccccchHHHHHHHHHhhhh
Q 028370          111 LHTAAKERKKEAVRFLIENGAFLPDDINDSRFNPPLHYCPSLEWAYEEMMRFQRES  166 (210)
Q Consensus       111 L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~~~l~~~  166 (210)
                      ||+|+..|+.+++++|+++|+++  +.+|..|.|||++|+..  +..+++++|.+.
T Consensus        84 L~~A~~~~~~~~v~~Ll~~g~~~--~~~~~~g~tpl~~A~~~--~~~~~~~~Ll~~  135 (136)
T 2jab_A           84 LHLAAFIGHLEIAEVLLKHGADV--NAQDKFGKTAFDISIGN--GNEDLAEILQKL  135 (136)
T ss_dssp             HHHHHHHTCHHHHHHHHHTTCCT--TCCCTTSCCHHHHHHHT--TCHHHHHHHHHC
T ss_pred             HHHHHHcCCHHHHHHHHHcCCCC--cCcCCCCCCHHHHHHHC--CCHHHHHHHHHc
Confidence            99999999999999999999965  88999999999999954  447888887653

>3aaa_C Myotrophin, protein V-1; actin capping protein, barbed END capping, inhibition, prote binding, actin capping, actin-binding, cytoskeleton, ANK RE; 2.20A {Homo sapiens} PDB: 1myo_A 2kxp_C 2myo_A

Probab=99.94  E-value=1.9e-26  Score=158.23  Aligned_cols=112  Identities=30%  Similarity=0.399  Sum_probs=103.9

Q ss_pred             cCCCCChHHHHHHHcCCHHHHHHHHHCCCCccccccCCCCCCCcHHHHHHHCCcHHHHHHHHHcCCCCCcccCCCCCChH
Q 028370           31 TDDRGWTPLHIGARKGDIKLVKQLLDEGMDVNVAAWGPKSKGVTPLHLAAQGGHLEVMDVLLERGADIDARTKGACGWTP  110 (210)
Q Consensus        31 ~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~~g~tp  110 (210)
                      .+..|.||||+|+..|+.++++.|++.|++++..    +..|+||||+|+..++.+++++|++.|++++..+..  |.||
T Consensus         3 ~~~~~~~~l~~A~~~~~~~~v~~ll~~~~~~~~~----~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~d~~--g~tp   76 (123)
T 3aaa_C            3 LGSMCDKEFMWALKNGDLDEVKDYVAKGEDVNRT----LEGGRKPLHYAADCGQLEILEFLLLKGADINAPDKH--HITP   76 (123)
T ss_dssp             ----CHHHHHHHHHTTCHHHHHHHHHTTCCTTSC----CTTSSCHHHHHHHTTCHHHHHHHHTTTCCTTCCCTT--SCCH
T ss_pred             cccccchHHHHHHHcCCHHHHHHHHHcCCCcCcc----CCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCcCCCC--CCCH
Confidence            3567899999999999999999999999999888    899999999999999999999999999999998877  9999


Q ss_pred             HHHHHhcCCHHHHHHHHHcCCCCCCCCCCCCCCCcccccc
Q 028370          111 LHTAAKERKKEAVRFLIENGAFLPDDINDSRFNPPLHYCP  150 (210)
Q Consensus       111 L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~g~t~l~~a~  150 (210)
                      ||+|+..|+.+++++|+++|+++  +.+|..|.||+++|.
T Consensus        77 L~~A~~~~~~~~v~~Ll~~ga~~--~~~~~~g~t~l~~A~  114 (123)
T 3aaa_C           77 LLSAVYEGHVSCVKLLLSKGADK--TVKGPDGLTAFEATD  114 (123)
T ss_dssp             HHHHHHHTCHHHHHHHHHTTCCT--TCCCTTSCCHHHHCC
T ss_pred             HHHHHHcCCHHHHHHHHHcCCCC--CCcCCCCCCHHHHhC
Confidence            99999999999999999999965  899999999999996

>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium}

Probab=99.94  E-value=1.8e-26  Score=170.10  Aligned_cols=131  Identities=21%  Similarity=0.238  Sum_probs=107.7

Q ss_pred             hhcccCCCCChHHHHHHHcCCHHHHHHHHHCCCCccccccCCCCCCCcHHHHHHHCCcHHHHHHHHHcCCCCCcccCCCC
Q 028370           27 SVIDTDDRGWTPLHIGARKGDIKLVKQLLDEGMDVNVAAWGPKSKGVTPLHLAAQGGHLEVMDVLLERGADIDARTKGAC  106 (210)
Q Consensus        27 ~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~~  106 (210)
                      ..+.+|..|+||||+|+..|+.+++++|++.|++++..    +..|.||||+|+..|+.+++++|++.|++++..+..  
T Consensus        27 ~~n~~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~----~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~--  100 (192)
T 2rfm_A           27 LRNYRDSYNRTPLMVACMLGMENAIDKLVENFDKLEDK----DIEGSTALIWAVKNNRLGIAEKLLSKGSNVNTKDFS--  100 (192)
T ss_dssp             HHTCCCTTCCCHHHHHHHHTCGGGHHHHHHHHCCTTCC----CTTSCCHHHHHHHTTCHHHHHHHHHHTCCTTCCCTT--
T ss_pred             HHhCcCCCCCCHHHHHHHcCCHHHHHHHHHhccccccc----cccCccHHHHHHHcCCHHHHHHHHHCCCCCCCCCCC--
Confidence            35668888888888888888888888888888888777    788888888888888888888888888888877766  


Q ss_pred             CChHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCCCCCcccccccchHHHHHHHHHhhhhh
Q 028370          107 GWTPLHTAAKERKKEAVRFLIENGAFLPDDINDSRFNPPLHYCPSLEWAYEEMMRFQRESF  167 (210)
Q Consensus       107 g~tpL~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~~~l~~~~  167 (210)
                      |.||||+|+..|+.+++++|+++|+++  +.++..|.||||+|+..  +..+++++|.+..
T Consensus       101 g~t~L~~A~~~~~~~~v~~Ll~~g~~~--~~~~~~g~t~L~~A~~~--~~~~~v~~Ll~~g  157 (192)
T 2rfm_A          101 GKTPLMWSIIFGYSEMSYFLLEHGANV--NDRNLEGETPLIVASKY--GRSEIVKKLLELG  157 (192)
T ss_dssp             SCCHHHHHHHHTCHHHHHHHHHTTCCS--SCCCTTCCCHHHHHHHH--TCHHHHHHHHHTT
T ss_pred             CCcHHHHHHHcCCHHHHHHHHHCCCCC--CCCCCCCCCHHHHHHHc--CCHHHHHHHHHCC
Confidence            888888888888888888888888855  77888888888888843  4467888777663

>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B

Probab=99.94  E-value=1.3e-26  Score=165.27  Aligned_cols=144  Identities=26%  Similarity=0.370  Sum_probs=125.7

Q ss_pred             cchhHHHHHHhhHHHhhhhcccCCCCChHHHHHHHcCCHHHHHHHHHCCCCccccccCCCCCCCcHHHHHHHCCcHHHHH
Q 028370           10 LGPFTLQRKASRKRFFRSVIDTDDRGWTPLHIGARKGDIKLVKQLLDEGMDVNVAAWGPKSKGVTPLHLAAQGGHLEVMD   89 (210)
Q Consensus        10 ~~~~~~~~~~~~~~~~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~   89 (210)
                      .|....+...... ...+++.+|..|.||||+ +..|+.+++++|++.|++++..    +..|.||||+|+..|+.++++
T Consensus        12 ~g~~~~v~~ll~~-~~~~~~~~~~~g~t~L~~-~~~~~~~~v~~Ll~~g~~~~~~----~~~g~t~L~~A~~~~~~~~v~   85 (156)
T 1bd8_A           12 RGDVQEVRRLLHR-ELVHPDALNRFGKTALQV-MMFGSTAIALELLKQGASPNVQ----DTSGTSPVHDAARTGFLDTLK   85 (156)
T ss_dssp             HTCHHHHHHHHHT-TCCCTTCCCTTSCCHHHH-SCTTCHHHHHHHHHTTCCTTCC----CTTSCCHHHHHHHTTCHHHHH
T ss_pred             hCCHHHHHHHHHh-hCcCccccCCCCCcHHHH-HHcCCHHHHHHHHHCCCCCCCc----CCCCCCHHHHHHHcCcHHHHH
Confidence            3555555555554 444678899999999999 9999999999999999999988    899999999999999999999


Q ss_pred             HHHHcCCCCCcccCCCCCChHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCCCCCcccccccchHHHHHHHHHhhhh
Q 028370           90 VLLERGADIDARTKGACGWTPLHTAAKERKKEAVRFLIENGAFLPDDINDSRFNPPLHYCPSLEWAYEEMMRFQRES  166 (210)
Q Consensus        90 ~Ll~~g~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~~~l~~~  166 (210)
                      +|++.|++++..+..  |.||||+|+..|+.+++++|++. +++  +.+|..|.||+++|+..+  ..+++++|.+.
T Consensus        86 ~Ll~~g~~~~~~~~~--g~t~L~~A~~~~~~~~v~~Ll~~-~~~--~~~~~~g~t~l~~A~~~~--~~~~v~~Ll~~  155 (156)
T 1bd8_A           86 VLVEHGADVNVPDGT--GALPIHLAVQEGHTAVVSFLAAE-SDL--HRRDARGLTPLELALQRG--AQDLVDILQGH  155 (156)
T ss_dssp             HHHHTTCCSCCCCTT--SCCHHHHHHHHTCHHHHHHHHTT-SCT--TCCCTTSCCHHHHHHHSC--CHHHHHHHHTT
T ss_pred             HHHHcCCCCCCcCCC--CCcHHHHHHHhChHHHHHHHHhc-cCC--CCcCCCCCCHHHHHHHcC--cHHHHHHHHhh
Confidence            999999999998877  99999999999999999999999 754  889999999999999554  47888887653

>4b93_B Ankyrin repeat domain-containing protein 27; endocytosis, exocytosis, snare; 2.00A {Homo sapiens}

Probab=99.94  E-value=2.1e-26  Score=178.76  Aligned_cols=116  Identities=31%  Similarity=0.470  Sum_probs=84.0

Q ss_pred             ccCCCCChHHHHHHHcCCHHHHHHHHHCCCCccccccCCCCCCCcHHHHHHHCCcHHHHHHHHHcCCCCCcccCCCCCCh
Q 028370           30 DTDDRGWTPLHIGARKGDIKLVKQLLDEGMDVNVAAWGPKSKGVTPLHLAAQGGHLEVMDVLLERGADIDARTKGACGWT  109 (210)
Q Consensus        30 ~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~~g~t  109 (210)
                      .++..|.||+|.|+..++.++++.|++.|++++..    |..|+||||+|+..|+.+++++|++.|++++..+..  |.|
T Consensus       114 ~~~~~g~t~l~~a~~~~~~~~~~~Ll~~g~~~n~~----d~~g~TpL~~A~~~g~~~~v~~Ll~~gadvn~~~~~--g~t  187 (269)
T 4b93_B          114 ARNADQAVPLHLACQQGHFQVVKCLLDSNAKPNKK----DLSGNTPLIYACSGGHHELVALLLQHGASINASNNK--GNT  187 (269)
T ss_dssp             CCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCSCCC----CTTCCCHHHHHHHTTCGGGHHHHHHTTCCTTCBCTT--SCB
T ss_pred             ccCCCCCCccccccccChHHHHHHHHHCCCCCCCC----CCCCCCHHHHHHHCCCHHHHHHHHHCCCCCCccccC--CCc
Confidence            34444455555555555555555555555555555    777888888888888888888888888888877766  888


Q ss_pred             HHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCCCCCcccccccch
Q 028370          110 PLHTAAKERKKEAVRFLIENGAFLPDDINDSRFNPPLHYCPSLE  153 (210)
Q Consensus       110 pL~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~g~t~l~~a~~~~  153 (210)
                      |||+|+..|+.++|++|+++|+++  +.+|..|.||||+|+..+
T Consensus       188 ~Lh~A~~~g~~~~v~~Ll~~Gad~--~~~d~~G~TpL~~A~~~~  229 (269)
T 4b93_B          188 ALHEAVIEKHVFVVELLLLHGASV--QVLNKRQRTAVDCAEQNS  229 (269)
T ss_dssp             HHHHHHHTTCHHHHHHHHHTTCCS--CCCCTTSCCSGGGSCTTC
T ss_pred             HHHHHHHcCCHHHHHHHHHCCCCC--CCcCCCCCCHHHHHHhCC
Confidence            888888888888888888888855  778888888888887543

>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium}

Probab=99.94  E-value=2.7e-26  Score=169.12  Aligned_cols=132  Identities=28%  Similarity=0.320  Sum_probs=121.5

Q ss_pred             hhhcccCCCCChHHHHHHHcCCHHHHHHHHHCCCCccccccCCCCCCCcHHHHHHHCCcHHHHHHHHHcCCCCCcccCCC
Q 028370           26 RSVIDTDDRGWTPLHIGARKGDIKLVKQLLDEGMDVNVAAWGPKSKGVTPLHLAAQGGHLEVMDVLLERGADIDARTKGA  105 (210)
Q Consensus        26 ~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~  105 (210)
                      .+++.+|..|.||||+|+..|+.+++++|++.|++++..    +..|.||||+|+..++.+++++|++.|++++..+.. 
T Consensus        59 ~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~----~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~-  133 (192)
T 2rfm_A           59 DKLEDKDIEGSTALIWAVKNNRLGIAEKLLSKGSNVNTK----DFSGKTPLMWSIIFGYSEMSYFLLEHGANVNDRNLE-  133 (192)
T ss_dssp             CCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHTCCTTCC----CTTSCCHHHHHHHHTCHHHHHHHHHTTCCSSCCCTT-
T ss_pred             cccccccccCccHHHHHHHcCCHHHHHHHHHCCCCCCCC----CCCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCCCCC-
Confidence            456778899999999999999999999999999999988    899999999999999999999999999999988877 


Q ss_pred             CCChHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCCCCCcccccccchHHHHHHHHHhhhhh
Q 028370          106 CGWTPLHTAAKERKKEAVRFLIENGAFLPDDINDSRFNPPLHYCPSLEWAYEEMMRFQRESF  167 (210)
Q Consensus       106 ~g~tpL~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~~~l~~~~  167 (210)
                       |.||||+|+..|+.+++++|+++|+++  +.+|..|.||+++|+..  +..+++++|.+..
T Consensus       134 -g~t~L~~A~~~~~~~~v~~Ll~~ga~~--~~~~~~g~t~l~~A~~~--~~~~~v~~Ll~~~  190 (192)
T 2rfm_A          134 -GETPLIVASKYGRSEIVKKLLELGADI--SARDLTGLTAEASARIF--GRQEVIKIFTEVR  190 (192)
T ss_dssp             -CCCHHHHHHHHTCHHHHHHHHHTTCCT--TCBCTTSCBHHHHHHHT--TCHHHHHHHHHHH
T ss_pred             -CCCHHHHHHHcCCHHHHHHHHHCCCCC--CCcCCCCCCHHHHHHHh--CcHHHHHHHHhcc
Confidence             999999999999999999999999965  88999999999999954  4578888887754

>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A 1mx2_A 1mx6_A

Probab=99.93  E-value=3.1e-26  Score=164.14  Aligned_cols=131  Identities=24%  Similarity=0.352  Sum_probs=117.2

Q ss_pred             hhhcccCCCCChHHHHHHHcCCHHHHHHHHHCCCCccccccCCCCCCCcHHHHHHHCCcHHHHHHHHHcCCCCCcccCCC
Q 028370           26 RSVIDTDDRGWTPLHIGARKGDIKLVKQLLDEGMDVNVAAWGPKSKGVTPLHLAAQGGHLEVMDVLLERGADIDARTKGA  105 (210)
Q Consensus        26 ~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~  105 (210)
                      .+++.+|..|.||||+|+. |+.+++++|++.|++++..    +..|.||||+|+..|+.+++++|++.|++++..+.. 
T Consensus        29 ~~~~~~~~~g~t~L~~A~~-~~~~~v~~Ll~~g~~~~~~----~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~-  102 (162)
T 1ihb_A           29 VNVNAQNGFGRTALQVMKL-GNPEIARRLLLRGANPDLK----DRTGFAVIHDAARAGFLDTLQTLLEFQADVNIEDNE-  102 (162)
T ss_dssp             CCTTCCCTTSCCHHHHCCS-SCHHHHHHHHHTTCCTTCC----CTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTT-
T ss_pred             CCccccCccCccHHHHHHc-CcHHHHHHHHHcCCCCCCC----CCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCcCCC-
Confidence            4567788999999999999 9999999999999999888    899999999999999999999999999999988877 


Q ss_pred             CCChHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCCCCCcccccccchHHHHHHHHHhhhh
Q 028370          106 CGWTPLHTAAKERKKEAVRFLIENGAFLPDDINDSRFNPPLHYCPSLEWAYEEMMRFQRES  166 (210)
Q Consensus       106 ~g~tpL~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~~~l~~~  166 (210)
                       |.||||+|+..|+.+++++|+++|++. .+..+..|.||+++|+..  +..+++++|.+.
T Consensus       103 -g~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~~~~~g~t~l~~A~~~--~~~~~~~~Ll~~  159 (162)
T 1ihb_A          103 -GNLPLHLAAKEGHLRVVEFLVKHTASN-VGHRNHKGDTACDLARLY--GRNEVVSLMQAN  159 (162)
T ss_dssp             -SCCHHHHHHHTTCHHHHHHHHHHSCCC-TTCCCTTSCCHHHHHHHT--TCHHHHHHHHHT
T ss_pred             -CCCHHHHHHHcCCHHHHHHHHHccCCC-CCCcCCCCCcHHHHHHHc--CCHHHHHHHHHh
Confidence             999999999999999999999999952 478899999999999954  457888888764

>1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP: k.37.1.1

Probab=99.93  E-value=8.8e-26  Score=154.78  Aligned_cols=123  Identities=46%  Similarity=0.729  Sum_probs=113.7

Q ss_pred             CCChHHHHHHHcCCHHHHHHHHHCCCCccccccCCCCCCCcHHHHHHHCCcHHHHHHHHHcCCCCCcccCCCCCChHHHH
Q 028370           34 RGWTPLHIGARKGDIKLVKQLLDEGMDVNVAAWGPKSKGVTPLHLAAQGGHLEVMDVLLERGADIDARTKGACGWTPLHT  113 (210)
Q Consensus        34 ~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~~g~tpL~~  113 (210)
                      +|+||||.|++.|+.+++++|++.|++++..    +..|.||||+|+..++.+++++|++.|++++..+..  |.||||+
T Consensus         1 ~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~----~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~--g~t~l~~   74 (126)
T 1n0r_A            1 NGRTPLHLAARNGHLEVVKLLLEAGADVNAK----DKNGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKN--GRTPLHL   74 (126)
T ss_dssp             CCCCHHHHHHHHTCHHHHHHHHHHTCCTTCC----CTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTT--SCCHHHH
T ss_pred             CCccHHHHHHHcCcHHHHHHHHHcCCCCCCc----CCCCCcHHHHHHHcCcHHHHHHHHHcCCCCcccCCC--CCcHHHH
Confidence            5899999999999999999999999999887    899999999999999999999999999999988877  9999999


Q ss_pred             HHhcCCHHHHHHHHHcCCCCCCCCCCCCCCCcccccccchHHHHHHHHHhhhh
Q 028370          114 AAKERKKEAVRFLIENGAFLPDDINDSRFNPPLHYCPSLEWAYEEMMRFQRES  166 (210)
Q Consensus       114 A~~~g~~~~v~~Ll~~g~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~~~l~~~  166 (210)
                      |+..|+.+++++|+++|+++  +.+|..|.||+++|+..  +..+++++|.+.
T Consensus        75 A~~~~~~~~~~~Ll~~g~~~--~~~~~~g~t~l~~A~~~--~~~~~~~~Ll~~  123 (126)
T 1n0r_A           75 AARNGHLEVVKLLLEAGADV--NAKDKNGRTPLHLAARN--GHLEVVKLLLEA  123 (126)
T ss_dssp             HHHTTCHHHHHHHHHTTCCT--TCCCTTSCCHHHHHHHT--TCHHHHHHHHHH
T ss_pred             HHHcChHHHHHHHHHcCCCC--cccCCCCCCHHHHHHHc--CcHHHHHHHHHc
Confidence            99999999999999999965  88999999999999954  457888888764

>4b93_B Ankyrin repeat domain-containing protein 27; endocytosis, exocytosis, snare; 2.00A {Homo sapiens}

Probab=99.93  E-value=3.3e-26  Score=177.61  Aligned_cols=132  Identities=28%  Similarity=0.387  Sum_probs=122.7

Q ss_pred             hhhcccCCCCChHHHHHHHcCCHHHHHHHHHCCCCccccccCCCCCCCcHHHHHHHCCcHHHHHHHHHcCCCCCcccCCC
Q 028370           26 RSVIDTDDRGWTPLHIGARKGDIKLVKQLLDEGMDVNVAAWGPKSKGVTPLHLAAQGGHLEVMDVLLERGADIDARTKGA  105 (210)
Q Consensus        26 ~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~  105 (210)
                      .+++.+|.+|+||||+|+..|+.+++++|++.|++++..    +..|.||+++|+..++.+++++|++.|++++..+.. 
T Consensus        77 advn~~d~~G~TpLh~A~~~g~~~~v~~Ll~~~a~~~~~----~~~g~t~l~~a~~~~~~~~~~~Ll~~g~~~n~~d~~-  151 (269)
T 4b93_B           77 LGVNVTSQDGSSPLHVAALHGRADLIPLLLKHGANAGAR----NADQAVPLHLACQQGHFQVVKCLLDSNAKPNKKDLS-  151 (269)
T ss_dssp             CCTTCCCTTSCCHHHHHHHTTCTTHHHHHHHTTCCTTCC----CTTCCCHHHHHHHHTCHHHHHHHHHTTCCSCCCCTT-
T ss_pred             CCCCCcCCCCCCHHHHHHHcCcHHHHHHHHhcCCCcCcc----CCCCCCccccccccChHHHHHHHHHCCCCCCCCCCC-
Confidence            457789999999999999999999999999999999988    899999999999999999999999999999998877 


Q ss_pred             CCChHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCCCCCcccccccchHHHHHHHHHhhhhh
Q 028370          106 CGWTPLHTAAKERKKEAVRFLIENGAFLPDDINDSRFNPPLHYCPSLEWAYEEMMRFQRESF  167 (210)
Q Consensus       106 ~g~tpL~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~~~l~~~~  167 (210)
                       |.||||+|+..|+.+++++|+++|+++  +..+..|.||||+|+..  +..+++++|.+..
T Consensus       152 -g~TpL~~A~~~g~~~~v~~Ll~~gadv--n~~~~~g~t~Lh~A~~~--g~~~~v~~Ll~~G  208 (269)
T 4b93_B          152 -GNTPLIYACSGGHHELVALLLQHGASI--NASNNKGNTALHEAVIE--KHVFVVELLLLHG  208 (269)
T ss_dssp             -CCCHHHHHHHTTCGGGHHHHHHTTCCT--TCBCTTSCBHHHHHHHT--TCHHHHHHHHHTT
T ss_pred             -CCCHHHHHHHCCCHHHHHHHHHCCCCC--CccccCCCcHHHHHHHc--CCHHHHHHHHHCC
Confidence             999999999999999999999999966  88999999999999954  4578999998764

>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase, cyclin dependent kinase inhibitory protein, CDK, cell cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A 1dc2_A 2a5e_A

Probab=99.93  E-value=2.4e-26  Score=164.15  Aligned_cols=128  Identities=25%  Similarity=0.361  Sum_probs=114.6

Q ss_pred             cccCCCCChHHHHHHHcCCHHHHHHHHHCCCCccccccCCCCCCCcHHHHHHHCCcHHHHHHHHHcCCCCCcccCCCCCC
Q 028370           29 IDTDDRGWTPLHIGARKGDIKLVKQLLDEGMDVNVAAWGPKSKGVTPLHLAAQGGHLEVMDVLLERGADIDARTKGACGW  108 (210)
Q Consensus        29 ~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~~g~  108 (210)
                      ...+..|.||||+|+..|+.+++++|+++|++++..    +..|.||||+|+ .|+.+++++|++.|++++..+..  |.
T Consensus         6 ~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~----~~~g~t~L~~A~-~~~~~~v~~Ll~~g~~~~~~d~~--g~   78 (156)
T 1bi7_B            6 GSSMEPSADWLATAAARGRVEEVRALLEAGANPNAP----NSYGRRPIQVMM-MGSARVAELLLLHGAEPNCADPA--TL   78 (156)
T ss_dssp             ----CCSTTHHHHHHHHTCHHHHHHHHTTTCCTTCC----CSSSCCTTTSSC-TTCHHHHHHHHTTTCCCCCCCTT--TC
T ss_pred             cCCCccchHHHHHHHHcCCHHHHHHHHHcCCCCCCC----CCCCCCHHHHHH-cCCHHHHHHHHHcCCCCCCcCCC--CC
Confidence            457888999999999999999999999999999988    899999999985 89999999999999999999877  89


Q ss_pred             h-HHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCCCCCcccccccchHHHHHHHHHhhhhh
Q 028370          109 T-PLHTAAKERKKEAVRFLIENGAFLPDDINDSRFNPPLHYCPSLEWAYEEMMRFQRESF  167 (210)
Q Consensus       109 t-pL~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~~~l~~~~  167 (210)
                      | |||+|+..|+.+++++|+++|+++  +.+|..|.||||+|+.  .+..+++++|.+..
T Consensus        79 ttpL~~A~~~~~~~~v~~Ll~~ga~~--~~~d~~g~tpl~~A~~--~~~~~~v~~Ll~~g  134 (156)
T 1bi7_B           79 TRPVHDAAREGFLDTLVVLHRAGARL--DVRDAWGRLPVDLAEE--LGHRDVARYLRAAA  134 (156)
T ss_dssp             CCHHHHHHHHTCHHHHHHHHHHTCCS--SCCCTTCCCHHHHHHH--HTCHHHHHHHSSCC
T ss_pred             cHHHHHHHHCCCHHHHHHHHHcCCCC--cccCCCCCCHHHHHHH--hCHHHHHHHHHHcC
Confidence            8 999999999999999999999966  8899999999999994  44578898887653

>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A 4dx1_A 4dx2_A*

Probab=99.93  E-value=3.7e-26  Score=175.84  Aligned_cols=135  Identities=24%  Similarity=0.231  Sum_probs=120.1

Q ss_pred             hcccCCCCChHHHHHHHcCCHHHHHHHHHCCCCccccccCCC--------------CCCCcHHHHHHHCCcHHHHHHHHH
Q 028370           28 VIDTDDRGWTPLHIGARKGDIKLVKQLLDEGMDVNVAAWGPK--------------SKGVTPLHLAAQGGHLEVMDVLLE   93 (210)
Q Consensus        28 ~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~--------------~~g~t~L~~A~~~~~~~~v~~Ll~   93 (210)
                      +...|..|+||||+|+..|+.+++++|+++|++++..    +              ..|.||||+|+..|+.+++++|++
T Consensus        86 ~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~----~~~~~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~  161 (260)
T 3jxi_A           86 FRDVYYRGQTALHIAIERRCKHYVELLVEKGADVHAQ----ARGRFFQPKDEGGYFYFGELPLSLAACTNQPHIVHYLTE  161 (260)
T ss_dssp             BCCSSEESBCHHHHHHHTTCHHHHHHHHHTTCCTTCC----CEECCCSSSCCCCSCCSCSSHHHHHHHTTCHHHHHHHHH
T ss_pred             ccccccCCCCHHHHHHHcCCHHHHHHHHhCCCCcCcc----ccccccCcccccccccCCCCHHHHHHHcCCHHHHHHHHh
Confidence            3445668999999999999999999999999999987    6              579999999999999999999999


Q ss_pred             ---cCCCCCcccCCCCCChHHHHHHhcCC---------HHHHHHHHHcCCCCCC-----CCCCCCCCCcccccccchHHH
Q 028370           94 ---RGADIDARTKGACGWTPLHTAAKERK---------KEAVRFLIENGAFLPD-----DINDSRFNPPLHYCPSLEWAY  156 (210)
Q Consensus        94 ---~g~~~~~~~~~~~g~tpL~~A~~~g~---------~~~v~~Ll~~g~~~~~-----~~~~~~g~t~l~~a~~~~~~~  156 (210)
                         .|++++.++..  |.||||+|+..++         .+++++|+++|++++.     +.+|..|.||||+|+..  +.
T Consensus       162 ~~~~ga~~~~~d~~--g~TpLh~A~~~~~~~~~~~~~~~~~v~~Ll~~ga~~~~~~~~~~~~d~~g~tpL~~A~~~--g~  237 (260)
T 3jxi_A          162 NGHKQADLRRQDSR--GNTVLHALVAIADNTRENTKFVTKMYDLLLIKCAKLFPDTNLEALLNNDGLSPLMMAAKT--GK  237 (260)
T ss_dssp             CSSCCCCTTCCCTT--SCCHHHHHHHHCCSSHHHHHHHHHHHHHHHHHHHHHCTTCCGGGCCCTTSCCHHHHHHHT--TC
T ss_pred             ccccCCCCcccCCC--CCcHHHHHHHhccCchhHHHHHHHHHHHHHHhCcccccccchhhcccCCCCCHHHHHHHc--CC
Confidence               99999998887  9999999998887         7999999999996643     67999999999999954  45


Q ss_pred             HHHHHHhhhhhhcC
Q 028370          157 EEMMRFQRESFSAG  170 (210)
Q Consensus       157 ~~~~~~l~~~~~~~  170 (210)
                      .+++++|.+.....
T Consensus       238 ~~~v~~Ll~~g~~~  251 (260)
T 3jxi_A          238 IGIFQHIIRREIAD  251 (260)
T ss_dssp             HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhCCCc
Confidence            89999998876554

>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus}

Probab=99.93  E-value=4.5e-25  Score=166.92  Aligned_cols=142  Identities=27%  Similarity=0.254  Sum_probs=116.6

Q ss_pred             hhhhcccCCCCChHHHHHHHcCCHHHHHHHHHCCCCccccc-cCCCCCCCcHHHHHHHCCcHHHHHHHHHcCCCCCcccC
Q 028370           25 FRSVIDTDDRGWTPLHIGARKGDIKLVKQLLDEGMDVNVAA-WGPKSKGVTPLHLAAQGGHLEVMDVLLERGADIDARTK  103 (210)
Q Consensus        25 ~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~-~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~  103 (210)
                      ..+++.+|..|+||||+|+..|+.+++++|++.|+++.... ...+..|.||||+|+..|+.+++++|++.|++++..+.
T Consensus        27 g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~  106 (232)
T 2rfa_A           27 GCEVHQRGAMGETALHIAALYDNLEAAMVLMEAAPELVFEPMTSELYEGQTALHIAVINQNVNLVRALLARGASVSARAT  106 (232)
T ss_dssp             CSCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHCGGGGGCCCCSTTTTTCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCC
T ss_pred             CCCcccCCCCCCCHHHHHHHcCCHHHHHHHHHcCchhccccccccCCCCcCHHHHHHHcCCHHHHHHHHhCCCCCCcccC
Confidence            44577789999999999999999999999999998763211 11277899999999999999999999999999988765


Q ss_pred             -----------CCCCChHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCCCCCcccccccchHHH--HHHHHHhhhhhh
Q 028370          104 -----------GACGWTPLHTAAKERKKEAVRFLIENGAFLPDDINDSRFNPPLHYCPSLEWAY--EEMMRFQRESFS  168 (210)
Q Consensus       104 -----------~~~g~tpL~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~g~t~l~~a~~~~~~~--~~~~~~l~~~~~  168 (210)
                                 +..|.||||+|+..|+.+++++|+++|+++  +.+|..|.||||+|+..+...  .+++++|.+...
T Consensus       107 ~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~--~~~d~~g~t~L~~A~~~~~~~~~~~i~~~Ll~~g~  182 (232)
T 2rfa_A          107 GSVFHYRPHNLIYYGEHPLSFAACVGSEEIVRLLIEHGADI--RAQDSLGNTVLHILILQPNKTFACQMYNLLLSYDG  182 (232)
T ss_dssp             SGGGSCCTTCSCCCCSSHHHHHHHHTCHHHHHHHHHTTCCT--TCCCTTSCCHHHHHHTCSCHHHHHHHHHHHHHTTC
T ss_pred             CcceeecccccccCCCCHHHHHHHcCCHHHHHHHHHCCCCC--CCCCCCCCCHHHHHHHcCChHHHHHHHHHHHhcCC
Confidence                       123999999999999999999999999966  889999999999999655321  234477766543

>2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor, cytoplasm, phosphorylation, P53 binding protein, ANK repeat, SH3 domain; 2.10A {Homo sapiens}

Probab=99.93  E-value=3.1e-25  Score=168.25  Aligned_cols=134  Identities=23%  Similarity=0.350  Sum_probs=119.1

Q ss_pred             hcccCCCCChHHHHHHHcCCHHHHHHHHHCCCCccccccCCCCCCCcHHHHHHHCCcHHHHHHHHHcCCCCCcccCCCCC
Q 028370           28 VIDTDDRGWTPLHIGARKGDIKLVKQLLDEGMDVNVAAWGPKSKGVTPLHLAAQGGHLEVMDVLLERGADIDARTKGACG  107 (210)
Q Consensus        28 ~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~~g  107 (210)
                      .+..+..|.||||+|+..|+.+++++|++.|++++..    +..|.||||+|+..|+.+++++|++.|++++..+..  |
T Consensus        14 ~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~----d~~g~tpLh~A~~~g~~~~v~~Ll~~ga~~n~~d~~--g   87 (229)
T 2vge_A           14 ARRARLNPLVLLLDAALTGELEVVQQAVKEMNDPSQP----NEEGITALHNAICGANYSIVDFLITAGANVNSPDSH--G   87 (229)
T ss_dssp             CCCTTSCHHHHHHHHHHHTCHHHHHHHHHHSSCTTCC----CTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTT--C
T ss_pred             ccccccchhHHHHHHHHcCCHHHHHHHHhcCCCCCCC----CCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCCCCC--C
Confidence            3445667889999999999999999999999999988    999999999999999999999999999999999887  9


Q ss_pred             ChHHHHHHhcCCHHHHHHHHHcCCCCCCCCCC-CCCCCcccccccchHHHHHHHHHhhhhhhc
Q 028370          108 WTPLHTAAKERKKEAVRFLIENGAFLPDDIND-SRFNPPLHYCPSLEWAYEEMMRFQRESFSA  169 (210)
Q Consensus       108 ~tpL~~A~~~g~~~~v~~Ll~~g~~~~~~~~~-~~g~t~l~~a~~~~~~~~~~~~~l~~~~~~  169 (210)
                      .||||+|+..|+.+++++|+++|+++  +..+ ..|.|||++|+....+..+++++|.+....
T Consensus        88 ~tpLh~A~~~g~~~~v~~Ll~~ga~~--~~~~~~~g~tpL~~A~a~~~~~~~~v~~Ll~~ga~  148 (229)
T 2vge_A           88 WTPLHCAASCNDTVICMALVQHGAAI--FATTLSDGATAFEKCDPYREGYADCATYLADVEQS  148 (229)
T ss_dssp             CCHHHHHHHTTCHHHHHHHHTTTCCT--TCCCSSTTCCTGGGCCTTSTTHHHHHHHHHHHHHH
T ss_pred             CCHHHHHHHcCCHHHHHHHHHcCCCc--ccccCCCCCCHHHHHHHHhcChHHHHHHHHHcCCC
Confidence            99999999999999999999999976  6665 699999999932255668999999887544

>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A

Probab=99.93  E-value=1e-24  Score=165.55  Aligned_cols=127  Identities=24%  Similarity=0.393  Sum_probs=75.9

Q ss_pred             hcccCCCCChHHHHHHHcCCHHHHHHHHHCCCCccccccCCC-CCCCcHHHHHHHCCcHHHHHHHHHcCCCCCcccCCCC
Q 028370           28 VIDTDDRGWTPLHIGARKGDIKLVKQLLDEGMDVNVAAWGPK-SKGVTPLHLAAQGGHLEVMDVLLERGADIDARTKGAC  106 (210)
Q Consensus        28 ~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~-~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~~  106 (210)
                      ++.+|..|.||||+|+..|+.+++++|++.|++++..    + ..|.||||+|+..|+.+++++|+++|++++..+..  
T Consensus       109 ~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~----~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~--  182 (241)
T 1k1a_A          109 LEARNYDGLTALHVAVNTECQETVQLLLERGADIDAV----DIKSGRSPLIHAVENNSLSMVQLLLQHGANVNAQMYS--  182 (241)
T ss_dssp             TTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCC----CTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCBCTT--
T ss_pred             ccccCcCCCcHHHHHHHcCCHHHHHHHHHcCCCcccc----cccCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCcCCC--
Confidence            3445556666666666666666666666666666554    3 45666666666666666666666666666655554  


Q ss_pred             CChHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCCCCCcccccccchHHHHHHHHHhh
Q 028370          107 GWTPLHTAAKERKKEAVRFLIENGAFLPDDINDSRFNPPLHYCPSLEWAYEEMMRFQR  164 (210)
Q Consensus       107 g~tpL~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~~~l~  164 (210)
                      |.||||+|+..|+.+++++|+++|+++  +.+|..|.||+++|+  ..+..++++.+.
T Consensus       183 g~t~L~~A~~~~~~~~v~~Ll~~ga~~--~~~~~~g~tpl~~A~--~~~~~~i~~~l~  236 (241)
T 1k1a_A          183 GSSALHSASGRGLLPLVRTLVRSGADS--SLKNCHNDTPLMVAR--SRRVIDILRGKA  236 (241)
T ss_dssp             SCBHHHHHHHHTCHHHHHHHHHTTCCT--TCCCTTSCCTTTTCS--SHHHHHHHTC--
T ss_pred             CCCHHHHHHHcCCHHHHHHHHhcCCCC--CCcCCCCCCHHHHHH--hcCcHHHHhhhc
Confidence            666666666666666666666666643  556666666666666  333455554443

>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A

Probab=99.93  E-value=1.8e-25  Score=171.62  Aligned_cols=146  Identities=24%  Similarity=0.293  Sum_probs=111.9

Q ss_pred             chhHHHHHHhhHHHhhhhcccCCCCChHHHHHHHcCCHHHHHHHHHCCC-CccccccCCCCCCCcHHHHHHHCCcHHHHH
Q 028370           11 GPFTLQRKASRKRFFRSVIDTDDRGWTPLHIGARKGDIKLVKQLLDEGM-DVNVAAWGPKSKGVTPLHLAAQGGHLEVMD   89 (210)
Q Consensus        11 ~~~~~~~~~~~~~~~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~-~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~   89 (210)
                      |....+......  ..+++.+|..|.||||+|+..|+.+++++|++.++ +++..    +..|.||||+|+..++.++++
T Consensus        68 g~~~~v~~Ll~~--g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~----~~~g~t~L~~A~~~~~~~~v~  141 (253)
T 1yyh_A           68 SRSDAAKRLLEA--SADANIQDNMGRTPLHAAVSADAQGVFQILIRNRATDLDAR----MHDGTTPLILAARLAVEGMLE  141 (253)
T ss_dssp             TCHHHHHHHHHT--TCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHSTTSCTTCC----CTTCCCHHHHHHHHTCSSHHH
T ss_pred             CCHHHHHHHHHc--CCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCcccc----CCCCCcHHHHHHHcChHHHHH
Confidence            444444444332  45567788888888888888888888888888876 66666    778888888888888888888


Q ss_pred             HHHHcCCCCCcccCCCCCChHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCCCCCcccccccchHHHHHHHHHhhhhhh
Q 028370           90 VLLERGADIDARTKGACGWTPLHTAAKERKKEAVRFLIENGAFLPDDINDSRFNPPLHYCPSLEWAYEEMMRFQRESFS  168 (210)
Q Consensus        90 ~Ll~~g~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~~~l~~~~~  168 (210)
                      +|++.|++++..+..  |.||||+|+..|+.+++++|+++|+++  +.+|..|.||||+|+.  .+..+++++|.+...
T Consensus       142 ~Ll~~g~~~~~~d~~--g~t~L~~A~~~~~~~~v~~Ll~~ga~~--~~~~~~g~tpL~~A~~--~~~~~~v~~Ll~~ga  214 (253)
T 1yyh_A          142 DLINSHADVNAVDDL--GKSALHWAAAVNNVDAAVVLLKNGANK--DMQNNREETPLFLAAR--EGSYETAKVLLDHFA  214 (253)
T ss_dssp             HHHHTTCCTTCBCTT--SCBHHHHHHHHTCHHHHHHHHHTTCCT--TCCCTTSCCHHHHHHH--HTCHHHHHHHHHTTC
T ss_pred             HHHHcCCCCCCcCCC--CCCHHHHHHHcCCHHHHHHHHHcCCCC--CCcCCCCCCHHHHHHH--CCCHHHHHHHHHcCC
Confidence            888888888877766  888888888888888888888888855  7778888888888884  344677887777643

>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A

Probab=99.93  E-value=1.4e-24  Score=163.98  Aligned_cols=133  Identities=37%  Similarity=0.487  Sum_probs=118.7

Q ss_pred             hhhcccCCCCChHHHHHHHcCCHHHHHHHHHCCCCccccccCCCCCCCcHHHHHHHCCcHHHHHHHHHcCCCCCcccCCC
Q 028370           26 RSVIDTDDRGWTPLHIGARKGDIKLVKQLLDEGMDVNVAAWGPKSKGVTPLHLAAQGGHLEVMDVLLERGADIDARTKGA  105 (210)
Q Consensus        26 ~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~  105 (210)
                      .+++.+|..|.||||+|+..|+.+++++|+++|++++..    +..|.||||+|+..++.+++++|++.|++++..+.. 
T Consensus        64 ~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~----~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~-  138 (231)
T 3aji_A           64 VPVNDKDDAGWSPLHIAASAGXDEIVKALLVKGAHVNAV----NQNGCTPLHYAASKNRHEIAVMLLEGGANPDAKDHY-  138 (231)
T ss_dssp             CCSCCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCC----CTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTT-
T ss_pred             CCCCCcCCCCCCHHHHHHHcCHHHHHHHHHHcCCCCCCC----CCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCcCCC-
Confidence            356778889999999999999999999999999999887    889999999999999999999999999999888777 


Q ss_pred             CCChHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCCCCCcccccccchHHHHHHHHHhhhhhh
Q 028370          106 CGWTPLHTAAKERKKEAVRFLIENGAFLPDDINDSRFNPPLHYCPSLEWAYEEMMRFQRESFS  168 (210)
Q Consensus       106 ~g~tpL~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~~~l~~~~~  168 (210)
                       |.||||+|+..|+.+++++|+++|+++  +.+|..|.||||+|+..  +..+++++|.+...
T Consensus       139 -g~t~L~~A~~~~~~~~v~~Ll~~g~~~--~~~~~~g~t~L~~A~~~--~~~~~v~~Ll~~ga  196 (231)
T 3aji_A          139 -DATAMHRAAAKGNLKMVHILLFYKAST--NIQDTEGNTPLHLACDE--ERVEEAKFLVTQGA  196 (231)
T ss_dssp             -SCCHHHHHHHHTCHHHHHHHHHTTCCS--CCCCTTSCCHHHHHHHT--TCHHHHHHHHHTTC
T ss_pred             -CCcHHHHHHHcCCHHHHHHHHhcCCCc--cccCCCCCCHHHHHHHC--CCHHHHHHHHHCCC
Confidence             999999999999999999999999965  88899999999999854  44788888887743

>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A

Probab=99.93  E-value=1.2e-25  Score=169.31  Aligned_cols=129  Identities=23%  Similarity=0.389  Sum_probs=114.0

Q ss_pred             cccCCCCChHHHHHHHcCCHHHHHHHHHCCCCccccccCCCCCCCcHHHHHHHCCcHHHHHHHHHc-CCCCCcccCCCCC
Q 028370           29 IDTDDRGWTPLHIGARKGDIKLVKQLLDEGMDVNVAAWGPKSKGVTPLHLAAQGGHLEVMDVLLER-GADIDARTKGACG  107 (210)
Q Consensus        29 ~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~-g~~~~~~~~~~~g  107 (210)
                      ...|..|.||||+|+..|+.++++.|++.|++++..    +..|+||||+|+..|+.+++++|++. |++++..+..  |
T Consensus        67 ~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~----~~~g~t~L~~A~~~~~~~~v~~Ll~~~g~~~~~~d~~--g  140 (222)
T 3ehr_A           67 AEQAESIDNPLHEAAKRGNLSWLRECLDNRVGVNGL----DKAGSTALYWACHGGHKDIVEMLFTQPNIELNQQNKL--G  140 (222)
T ss_dssp             HHHEEEESCHHHHHHHHTCHHHHHHHHHTTCCTTCC----CTTSCCHHHHHHHTTCHHHHHHHTTSTTCCCCCCCTT--S
T ss_pred             cccccccccccccccccCcHHHHHHHHhCCCCcccc----CCCCCCHHHHHHHcCCHHHHHHHHcCCCCCccccCCC--C
Confidence            446778999999999999999999999999999988    89999999999999999999999998 9999999887  9


Q ss_pred             ChHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCCCCCcccccccchHHHHHHHHHhhhhh
Q 028370          108 WTPLHTAAKERKKEAVRFLIENGAFLPDDINDSRFNPPLHYCPSLEWAYEEMMRFQRESF  167 (210)
Q Consensus       108 ~tpL~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~~~l~~~~  167 (210)
                      .||||+|+..|+.+++++|+++|+++  +.+|..|.||+++|+.  .+..++++.+....
T Consensus       141 ~tpL~~A~~~~~~~~v~~Ll~~ga~~--~~~~~~g~t~l~~A~~--~~~~~~l~~l~~~~  196 (222)
T 3ehr_A          141 DTALHAAAWKGYADIVQLLLAKGART--DLRNIEKKLAFDMATN--AACASLLKKKQGTD  196 (222)
T ss_dssp             CCHHHHHHHHTCHHHHHHHHHHTCCS--CCCCTTSCCHHHHCCS--HHHHHHHC------
T ss_pred             CCHHHHHHHcCCHHHHHHHHHcCCCC--ccccCCCCCHHHHhcc--hhHHHHHHHHhccc
Confidence            99999999999999999999999966  8999999999999994  45677777666543

>4hbd_A KN motif and ankyrin repeat domain-containing Pro; structural genomics consortium, SGC, protein binding; 1.72A {Homo sapiens}

Probab=99.93  E-value=3.7e-25  Score=172.28  Aligned_cols=141  Identities=23%  Similarity=0.269  Sum_probs=108.2

Q ss_pred             HHHHHhhHHHhhhhcccCCCCChHHHHHHHcCCHHHHHHHHHCCC-CccccccCCCCCCCcHHHHHH-----HCCcHHHH
Q 028370           15 LQRKASRKRFFRSVIDTDDRGWTPLHIGARKGDIKLVKQLLDEGM-DVNVAAWGPKSKGVTPLHLAA-----QGGHLEVM   88 (210)
Q Consensus        15 ~~~~~~~~~~~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~-~~~~~~~~~~~~g~t~L~~A~-----~~~~~~~v   88 (210)
                      .......+.....++.+|..|+||||+|+..|+.+++++|++.|+ +++..    +..|.||||+|+     ..++.+++
T Consensus        91 ~~~~l~~~~~~~~~n~~d~~g~T~Lh~A~~~g~~~~v~~Ll~~g~~~~~~~----~~~g~tpL~~a~~~~~~~~~~~~~v  166 (276)
T 4hbd_A           91 TFRAMSARLLDYVVNIADSNGNTALHYSVSHANFPVVQQLLDSGVCKVDKQ----NRAGYSPIMLTALATLKTQDDIETV  166 (276)
T ss_dssp             HHHHHCHHHHHHHHTCCCTTSCCHHHHHHHTTCHHHHHHHHHTSCCCTTCC----CTTSCCHHHHGGGCCCCSHHHHHHH
T ss_pred             HHHHHHHHHHhhcCcCCCCCCCCHHHHHHHCCCHHHHHHHHHCCCCcCCCC----CCCCCCHHHHHHHHHhhhhhhHHHH
Confidence            333333333334578899999999999999999999999999998 88777    777888888887     45667788


Q ss_pred             HHHHHcCCCCCcccCCCCCChHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCCCCCcccccccchHHHHHHHHHhhh
Q 028370           89 DVLLERGADIDARTKGACGWTPLHTAAKERKKEAVRFLIENGAFLPDDINDSRFNPPLHYCPSLEWAYEEMMRFQRE  165 (210)
Q Consensus        89 ~~Ll~~g~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~~~l~~  165 (210)
                      ++|++.|.+++..+..  |.||||+|+..|+.+++++|+++|+++  +.+|..|.||||+|+..  +..+++++|.+
T Consensus       167 ~~Ll~~g~~~~~~~~~--g~tpLh~A~~~g~~~~v~~Ll~~gad~--n~~d~~G~TpLh~A~~~--g~~~iv~~Ll~  237 (276)
T 4hbd_A          167 LQLFRLGNINAKASQA--GQTALMLAVSHGRVDVVKALLACEADV--NVQDDDGSTALMCACEH--GHKEIAGLLLA  237 (276)
T ss_dssp             HHHHHHSCTTCCCTTT--CCCHHHHHHHTTCHHHHHHHHHTTCCT--TCCCTTSCCHHHHHHHH--TCHHHHHHHHT
T ss_pred             HHHHHcCCCccccCCC--CCCHHHHHHHcCCHHHHHHHHhCCCCC--CCCCCCCCCHHHHHHHC--CCHHHHHHHHh
Confidence            8888877777666655  778888888888888888888888855  77777888888888743  44677777776

>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A

Probab=99.93  E-value=1e-24  Score=163.94  Aligned_cols=147  Identities=24%  Similarity=0.291  Sum_probs=116.4

Q ss_pred             cchhHHHHHHhhHHHhhhhcccCCCCChHHHHHHHcCCHHHHHHHHHCCC-CccccccCCCCCCCcHHHHHHHCCcHHHH
Q 028370           10 LGPFTLQRKASRKRFFRSVIDTDDRGWTPLHIGARKGDIKLVKQLLDEGM-DVNVAAWGPKSKGVTPLHLAAQGGHLEVM   88 (210)
Q Consensus        10 ~~~~~~~~~~~~~~~~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~-~~~~~~~~~~~~g~t~L~~A~~~~~~~~v   88 (210)
                      .|....+......  ..+++.+|..|.||||+|+..|+.+++++|++.++ +++..    +..|.||||+|+..++.+++
T Consensus        35 ~g~~~~v~~Ll~~--g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~----~~~g~t~L~~A~~~~~~~~~  108 (223)
T 2f8y_A           35 YSRSDAAKRLLEA--SADANIQDNMGRTPLHAAVSADAQGVFQILIRNRATDLDAR----MHDGTTPLILAARLAVEGML  108 (223)
T ss_dssp             TTCHHHHHHHHHT--TCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHBTTSCTTCC----CTTCCCHHHHHHHHTCHHHH
T ss_pred             cCCHHHHHHHHHc--CCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCcccC----CCCCCcHHHHHHHhCcHHHH
Confidence            3455544444433  44567788888899999999999999999988876 66666    78888899999988889999


Q ss_pred             HHHHHcCCCCCcccCCCCCChHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCCCCCcccccccchHHHHHHHHHhhhhhh
Q 028370           89 DVLLERGADIDARTKGACGWTPLHTAAKERKKEAVRFLIENGAFLPDDINDSRFNPPLHYCPSLEWAYEEMMRFQRESFS  168 (210)
Q Consensus        89 ~~Ll~~g~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~~~l~~~~~  168 (210)
                      ++|++.|++++..+..  |.||||+|+..|+.+++++|+++|+++  +.++..|.||||+|+.  .+..+++++|.+...
T Consensus       109 ~~Ll~~g~~~~~~~~~--g~t~L~~A~~~~~~~~v~~Ll~~g~~~--~~~~~~g~t~L~~A~~--~~~~~~v~~Ll~~ga  182 (223)
T 2f8y_A          109 EDLINSHADVNAVDDL--GKSALHWAAAVNNVDAAVVLLKNGANK--DMQNNREETPLFLAAR--EGSYETAKVLLDHFA  182 (223)
T ss_dssp             HHHHHTTCCTTCBCTT--SCBHHHHHHHTTCHHHHHHHHHTTCCT--TCCCTTCCCHHHHHHH--HTCHHHHHHHHHTTC
T ss_pred             HHHHHcCCCCcCcCCC--CCcHHHHHHHcCCHHHHHHHHHcCCCC--CCcCCCCcCHHHHHHH--cCCHHHHHHHHHcCC
Confidence            9998888888888766  889999999888899999999888855  7788888899998884  345788888877643

>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis}

Probab=99.92  E-value=3.7e-26  Score=168.11  Aligned_cols=133  Identities=20%  Similarity=0.192  Sum_probs=114.5

Q ss_pred             hhhcccC-CCCChHHHHHHHcCCH----HHHHHHHHCCCCccccccCCCCCCCcHHHHHHHCCc------HHHHHHHHHc
Q 028370           26 RSVIDTD-DRGWTPLHIGARKGDI----KLVKQLLDEGMDVNVAAWGPKSKGVTPLHLAAQGGH------LEVMDVLLER   94 (210)
Q Consensus        26 ~~~~~~d-~~g~t~L~~A~~~g~~----~~v~~Ll~~g~~~~~~~~~~~~~g~t~L~~A~~~~~------~~~v~~Ll~~   94 (210)
                      ...+..+ ..|+||||+|+.+|+.    +++++|+++|++++..    +..|+||||+|+..++      .+++++|++.
T Consensus        28 ~~~~~~~~~~g~T~Lh~A~~~~~~~~~~~iv~~Ll~~Gadvn~~----d~~g~TpLh~a~~~~~~~~~~~~~iv~~Ll~~  103 (186)
T 3t8k_A           28 KGYEDKESVLKSNILYDVLRNNNDEARYKISMFLINKGADIKSR----TKEGTTLFFPLFQGGGNDITGTTELCKIFLEK  103 (186)
T ss_dssp             HSSSCHHHHHTTTHHHHHTTCSCHHHHHHHHHHHHHTTCCSSCC----CTTCCCTHHHHHHHCTTCHHHHHHHHHHHHHT
T ss_pred             cCcccccccCCCCHHHHHHHcCCcchHHHHHHHHHHCCCCCCCC----CCCCCcHHHHHHHcCCcchhhHHHHHHHHHHC
Confidence            3445556 6799999999999985    5899999999999998    9999999999999886      5789999999


Q ss_pred             CCCCCcccCCCCCC-hHHHHHHhcC-----CHHHHHHHHH-cCCCCCCCCCCCCCCCcccccccchHHHHHHHHHhhhhh
Q 028370           95 GADIDARTKGACGW-TPLHTAAKER-----KKEAVRFLIE-NGAFLPDDINDSRFNPPLHYCPSLEWAYEEMMRFQRESF  167 (210)
Q Consensus        95 g~~~~~~~~~~~g~-tpL~~A~~~g-----~~~~v~~Ll~-~g~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~~~l~~~~  167 (210)
                      |++++.++..  |. ||||+|+..+     +.+++++|++ +|+++  +.+|..|.||||+|+..+  ..+++++|.+..
T Consensus       104 Gadin~~d~~--g~ttpLh~A~~~~~~~~~~~~iv~~Ll~~~gad~--~~~d~~G~TpL~~A~~~~--~~~~v~~L~~~~  177 (186)
T 3t8k_A          104 GADITALYKP--YKIVVFKNIFNYFVDENEMIPLYKLIFSQSGLQL--LIKDKWGLTALEFVKRCQ--KPIALKMMEDYI  177 (186)
T ss_dssp             TCCSSSCBGG--GTBCTTGGGGGCCSCHHHHHHHHHHHHTSTTCCT--TCCCTTSCCHHHHHHTTT--CHHHHHHHHHHH
T ss_pred             CCCCCccCCC--cCchHHHHHHHcCCChhhHHHHHHHHHHhcCCCC--cccCCCCCCHHHHHHHcC--CHHHHHHHHHHH
Confidence            9999999888  99 9999999844     4679999999 99966  999999999999999544  467777777654


Q ss_pred             h
Q 028370          168 S  168 (210)
Q Consensus       168 ~  168 (210)
                      .
T Consensus       178 ~  178 (186)
T 3t8k_A          178 K  178 (186)
T ss_dssp             H
T ss_pred             H
Confidence            3

>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E

Probab=99.92  E-value=1.9e-24  Score=164.11  Aligned_cols=152  Identities=23%  Similarity=0.265  Sum_probs=104.7

Q ss_pred             cchhHHHHHHhhHHHhh-------hhcccCCCCChHHHHHHHcCCHHHHHHHHHCCCCcccc--ccCCCCCCCcHHHHHH
Q 028370           10 LGPFTLQRKASRKRFFR-------SVIDTDDRGWTPLHIGARKGDIKLVKQLLDEGMDVNVA--AWGPKSKGVTPLHLAA   80 (210)
Q Consensus        10 ~~~~~~~~~~~~~~~~~-------~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~--~~~~~~~g~t~L~~A~   80 (210)
                      .+|+..+........++       +++.+|..|.||||+|+..|+.+++++|++.++++...  ....+..|.||||+|+
T Consensus        46 ~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~g~t~L~~A~  125 (236)
T 1ikn_D           46 QTPLHLAVITNQPEIAEALLGAGCDPELRDFRGNTPLHLACEQGCLASVGVLTQSCTTPHLHSILKATNYNGHTCLHLAS  125 (236)
T ss_dssp             CCHHHHHHHTTCHHHHHCCCSCCCCSCCCCTTCCCHHHHHHHHTCHHHHHHHHHSTTTTSSSCGGGCCCTTCCCHHHHHH
T ss_pred             CCHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHhcccchhHHHHhhccCCCCCCHHHHHH
Confidence            35555555544444332       34456677778888888888888888888777653110  0112667788888888


Q ss_pred             HCCcHHHHHHHHHcCCCCCcccC-CCCCChHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCCCCCcccccccchHHHHHH
Q 028370           81 QGGHLEVMDVLLERGADIDARTK-GACGWTPLHTAAKERKKEAVRFLIENGAFLPDDINDSRFNPPLHYCPSLEWAYEEM  159 (210)
Q Consensus        81 ~~~~~~~v~~Ll~~g~~~~~~~~-~~~g~tpL~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~g~t~l~~a~~~~~~~~~~  159 (210)
                      ..|+.+++++|++.|++++..+. .  |.||||+|+..|+.+++++|+++|+++  +.+|..|.||+++|+..+  ..++
T Consensus       126 ~~~~~~~v~~Ll~~g~~~~~~~~~~--g~tpL~~A~~~~~~~~v~~Ll~~ga~~--~~~~~~g~tpl~~A~~~~--~~~~  199 (236)
T 1ikn_D          126 IHGYLGIVELLVSLGADVNAQEPCN--GRTALHLAVDLQNPDLVSLLLKCGADV--NRVTYQGYSPYQLTWGRP--STRI  199 (236)
T ss_dssp             HTTCHHHHHHHHHHTCCTTCCCTTT--CCCHHHHHHHTTCHHHHHHHHTTTCCS--CCCCTTCCCGGGGCTTSS--CHHH
T ss_pred             HcCCHHHHHHHHHcCCCCCCCCCCC--CCCHHHHHHHcCCHHHHHHHHHcCCCC--CcccCCCCCHHHHHHccC--chHH
Confidence            88888888888888888777765 4  778888888888888888888888854  777788888888887443  4677


Q ss_pred             HHHhhhhh
Q 028370          160 MRFQRESF  167 (210)
Q Consensus       160 ~~~l~~~~  167 (210)
                      +++|.+..
T Consensus       200 ~~~Ll~~g  207 (236)
T 1ikn_D          200 QQQLGQLT  207 (236)
T ss_dssp             HHHHHTTS
T ss_pred             HHHHHHcc
Confidence            77776653

>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A*

Probab=99.92  E-value=3.5e-25  Score=171.67  Aligned_cols=132  Identities=28%  Similarity=0.345  Sum_probs=118.2

Q ss_pred             cCCCCChHHHHHHHcCCHHHHHHHHHCCCCccccccCCCC--------------CCCcHHHHHHHCCcHHHHHHHHH---
Q 028370           31 TDDRGWTPLHIGARKGDIKLVKQLLDEGMDVNVAAWGPKS--------------KGVTPLHLAAQGGHLEVMDVLLE---   93 (210)
Q Consensus        31 ~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~--------------~g~t~L~~A~~~~~~~~v~~Ll~---   93 (210)
                      +|..|.||||+|+..|+.+++++|+++|++++..    +.              .|.||||+|+..|+.+++++|++   
T Consensus        97 ~d~~g~tpL~~A~~~g~~~~v~~Ll~~ga~~~~~----~~~~~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~  172 (273)
T 2pnn_A           97 SYYKGQTALHIAIERRNMTLVTLLVENGADVQAA----ANGDFFKKTKGRPGFYFGELPLSLAACTNQLAIVKFLLQNSW  172 (273)
T ss_dssp             TTTTTCCHHHHHHHTTCHHHHHHHHHTTCCTTCC----BCSGGGSSCSSSCCCCSCBSHHHHHHHTTCHHHHHHHHHCSS
T ss_pred             ccCCCCCHHHHHHHcCCHHHHHHHHHCCCCcCcc----ccccccccccccccccCCCCHHHHHHHcCCHHHHHHHHhccc
Confidence            6779999999999999999999999999999887    54              79999999999999999999999   


Q ss_pred             cCCCCCcccCCCCCChHHHHHHhcCC---------HHHHHHHHHcCCCCCC-----CCCCCCCCCcccccccchHHHHHH
Q 028370           94 RGADIDARTKGACGWTPLHTAAKERK---------KEAVRFLIENGAFLPD-----DINDSRFNPPLHYCPSLEWAYEEM  159 (210)
Q Consensus        94 ~g~~~~~~~~~~~g~tpL~~A~~~g~---------~~~v~~Ll~~g~~~~~-----~~~~~~g~t~l~~a~~~~~~~~~~  159 (210)
                      .|++++..+..  |.||||+|+..|+         .+++++|+++|++++.     +.+|..|.||||+|+..  +..++
T Consensus       173 ~gad~~~~d~~--g~tpLh~A~~~~~~~~~~~~~~~~~v~~Ll~~ga~~n~~~~~~~~~d~~g~TpL~~A~~~--g~~~i  248 (273)
T 2pnn_A          173 QPADISARDSV--GNTVLHALVEVADNTVDNTKFVTSMYNEILILGAKLHPTLKLEEITNRKGLTPLALAASS--GKIGV  248 (273)
T ss_dssp             CCCCTTCCCTT--SCCHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHHHHCTTCCGGGCCCTTSCCHHHHHHHT--TCHHH
T ss_pred             CCCCceeeCCC--CCcHHHHHHHccCcchhHHHHHHHHHHHHHHhhhhcccccccccccCCCCCCHHHHHHHh--ChHHH
Confidence            99999998887  9999999999988         8999999999997643     35899999999999954  45899


Q ss_pred             HHHhhhhhhcC
Q 028370          160 MRFQRESFSAG  170 (210)
Q Consensus       160 ~~~l~~~~~~~  170 (210)
                      +++|.+....+
T Consensus       249 v~~Ll~~ga~d  259 (273)
T 2pnn_A          249 LAYILQREIHE  259 (273)
T ss_dssp             HHHHHHHHTC-
T ss_pred             HHHHHHCCCCC
Confidence            99999876644

>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A

Probab=99.92  E-value=8.5e-25  Score=164.77  Aligned_cols=146  Identities=27%  Similarity=0.353  Sum_probs=100.0

Q ss_pred             chhHHHHHHhhHHHhhhhcccCCCCChHHHHHHHcCCHHHHHHHHHCC--CCccc-cccCCCCCCCcHHHHHHHCCcHHH
Q 028370           11 GPFTLQRKASRKRFFRSVIDTDDRGWTPLHIGARKGDIKLVKQLLDEG--MDVNV-AAWGPKSKGVTPLHLAAQGGHLEV   87 (210)
Q Consensus        11 ~~~~~~~~~~~~~~~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g--~~~~~-~~~~~~~~g~t~L~~A~~~~~~~~   87 (210)
                      |....+...... .....+.+|..|.||||+|+..|+.+++++|++.|  ++++. .    +..|.||||+|+..|+.++
T Consensus        13 g~~~~v~~Ll~~-~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~----~~~g~t~L~~A~~~~~~~~   87 (228)
T 2dzn_A           13 NEFFKVQELLHS-KPSLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKMENVNLDDYP----DDSGWTPFHIACSVGNLEV   87 (228)
T ss_dssp             TCHHHHHHHHHH-CGGGTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTCTTCCGGGCC----CTTSCCHHHHHHHHCCHHH
T ss_pred             CCHHHHHHHHhc-CccccccCCCCCCCHHHHHHHcCCHHHHHHHHhccccccccccC----CCCCCCHHHHHHHcCCHHH
Confidence            444444443332 23334457777888888888888888888888877  34333 3    6677788888887777888


Q ss_pred             HHHHHHcC--CCCCcccCCCCCChHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCCCCCcccccccchHHHHHHHHHhhh
Q 028370           88 MDVLLERG--ADIDARTKGACGWTPLHTAAKERKKEAVRFLIENGAFLPDDINDSRFNPPLHYCPSLEWAYEEMMRFQRE  165 (210)
Q Consensus        88 v~~Ll~~g--~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~~~l~~  165 (210)
                      +++|++.|  ++++..+..  |.||||+|+..|+.+++++|+++|+++  +.++..|.||||+|+..  +..+++++|.+
T Consensus        88 ~~~Ll~~g~~~~~~~~~~~--g~t~L~~A~~~~~~~~~~~Ll~~g~~~--~~~~~~g~t~L~~A~~~--~~~~~v~~Ll~  161 (228)
T 2dzn_A           88 VKSLYDRPLKPDLNKITNQ--GVTCLHLAVGKKWFEVSQFLIENGASV--RIKDKFNQIPLHRAASV--GSLKLIELLCG  161 (228)
T ss_dssp             HHHHHSSSSCCCTTCCCTT--CCCHHHHHHHTTCHHHHHHHHHTTCCS--CCCCTTSCCHHHHHHHT--TCHHHHHHHHT
T ss_pred             HHHHHhCCCCcccccCCcC--CCCHHHHHHHcCCHhHHHHHHHcCCCc--cccCCCCCCHHHHHHHc--CCHHHHHHHHh
Confidence            88887777  555555554  777888887777778888888777754  67777777888777743  34677777776


Q ss_pred             hh
Q 028370          166 SF  167 (210)
Q Consensus       166 ~~  167 (210)
                      ..
T Consensus       162 ~g  163 (228)
T 2dzn_A          162 LG  163 (228)
T ss_dssp             TT
T ss_pred             cC
Confidence            65

>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A

Probab=99.92  E-value=7.9e-25  Score=157.70  Aligned_cols=124  Identities=24%  Similarity=0.304  Sum_probs=114.9

Q ss_pred             CCChHHHHHHHcCCHHHHHHHHHCCCCccccccCCCCCCCcHHHHHHHCCcHHHHHHHHHcCCCCCcccCCCCCChHHHH
Q 028370           34 RGWTPLHIGARKGDIKLVKQLLDEGMDVNVAAWGPKSKGVTPLHLAAQGGHLEVMDVLLERGADIDARTKGACGWTPLHT  113 (210)
Q Consensus        34 ~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~~g~tpL~~  113 (210)
                      .|.||||.|+..|+.+++++|++.+++++..    +..|.||||+|+..|+.+++++|++.|++++..+..  |.||||+
T Consensus         2 ~~~t~L~~A~~~g~~~~v~~ll~~~~~~~~~----~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~--g~t~L~~   75 (167)
T 3v31_A            2 ANSLSVHQLAAQGEMLYLATRIEQENVINHT----DEEGFTPLMWAAAHGQIAVVEFLLQNGADPQLLGKG--RESALSL   75 (167)
T ss_dssp             TTCCCHHHHHHTTCHHHHHHHHHHSSCTTCC----CTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTT--CCCHHHH
T ss_pred             CCcchHHHHHHCCCHHHHHHHHHcCCCcCCC----CCCCCCHHHHHHHCCCHHHHHHHHHcCCCCCCcCCC--CCcHHHH
Confidence            5889999999999999999999999998888    899999999999999999999999999999988877  9999999


Q ss_pred             HHhcCCHHHHHHHHHcCCCCCCCCCCCCCCCcccccccchHHHHHHHHHhhhhh
Q 028370          114 AAKERKKEAVRFLIENGAFLPDDINDSRFNPPLHYCPSLEWAYEEMMRFQRESF  167 (210)
Q Consensus       114 A~~~g~~~~v~~Ll~~g~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~~~l~~~~  167 (210)
                      |+..|+.+++++|+++|+++  +..+..|.||||+|+..  +..+++++|.+..
T Consensus        76 A~~~~~~~~v~~Ll~~g~~~--~~~~~~g~t~L~~A~~~--~~~~~v~~Ll~~g  125 (167)
T 3v31_A           76 ACSKGYTDIVKMLLDCGVDV--NEYDWNGGTPLLYAVHG--NHVKCVKMLLESG  125 (167)
T ss_dssp             HHHHTCHHHHHHHHHHTCCT--TCCCTTSCCHHHHHHHT--TCHHHHHHHHHTT
T ss_pred             HHHcCCHHHHHHHHHCCCCC--CcCCCCCCCHHHHHHHc--CCHHHHHHHHHcC
Confidence            99999999999999999966  88999999999999954  4578899888753

>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A

Probab=99.92  E-value=3.9e-24  Score=161.54  Aligned_cols=147  Identities=29%  Similarity=0.368  Sum_probs=127.0

Q ss_pred             chhHHHHHHhhHHHhhhhcccCCCCChHHHHHHHcCCHHHHHHHHHCCCCccccccCCCCCCCcHHHHHHHCCcHHHHHH
Q 028370           11 GPFTLQRKASRKRFFRSVIDTDDRGWTPLHIGARKGDIKLVKQLLDEGMDVNVAAWGPKSKGVTPLHLAAQGGHLEVMDV   90 (210)
Q Consensus        11 ~~~~~~~~~~~~~~~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~   90 (210)
                      |.+........ ......+.+|..|.||||+|+..|+.+++++|++.|++++..    +..|.||||+|+..|+.+++++
T Consensus        17 g~~~~v~~ll~-~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~----~~~g~t~L~~A~~~~~~~~v~~   91 (231)
T 3aji_A           17 GKLDELKERIL-ADKSLATRTDQDSRTALHWACSAGHTEIVEFLLQLGVPVNDK----DDAGWSPLHIAASAGXDEIVKA   91 (231)
T ss_dssp             TCHHHHHHHHH-HCGGGGGCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCSCCC----CTTSCCHHHHHHHHTCHHHHHH
T ss_pred             CCHHHHHHHHH-hchhhhhcCCCCCCCHHHHHHHcCcHHHHHHHHHhCCCCCCc----CCCCCCHHHHHHHcCHHHHHHH
Confidence            44444443333 223446778999999999999999999999999999999988    8999999999999999999999


Q ss_pred             HHHcCCCCCcccCCCCCChHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCCCCCcccccccchHHHHHHHHHhhhhhh
Q 028370           91 LLERGADIDARTKGACGWTPLHTAAKERKKEAVRFLIENGAFLPDDINDSRFNPPLHYCPSLEWAYEEMMRFQRESFS  168 (210)
Q Consensus        91 Ll~~g~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~~~l~~~~~  168 (210)
                      |++.|++++..+..  |.||||+|+..|+.+++++|+++|+++  +.++..|.||||+|+..  +..+++++|.+...
T Consensus        92 Ll~~g~~~~~~~~~--g~t~L~~A~~~~~~~~~~~Ll~~g~~~--~~~~~~g~t~L~~A~~~--~~~~~v~~Ll~~g~  163 (231)
T 3aji_A           92 LLVKGAHVNAVNQN--GCTPLHYAASKNRHEIAVMLLEGGANP--DAKDHYDATAMHRAAAK--GNLKMVHILLFYKA  163 (231)
T ss_dssp             HHHTTCCTTCCCTT--SCCHHHHHHHTTCHHHHHHHHHTTCCT--TCCCTTSCCHHHHHHHH--TCHHHHHHHHHTTC
T ss_pred             HHHcCCCCCCCCCC--CCCHHHHHHHcCCHHHHHHHHHcCCCC--CCcCCCCCcHHHHHHHc--CCHHHHHHHHhcCC
Confidence            99999999988877  999999999999999999999999965  88999999999999944  45788888887543

>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A

Probab=99.92  E-value=3.1e-24  Score=161.28  Aligned_cols=125  Identities=30%  Similarity=0.387  Sum_probs=66.8

Q ss_pred             CCCCChHHHHHHHcCCHHHHHHHHHCCCCccccccCCCCCCCcHHHHHHHCCcHHHHHHHHHcCC-CCCcccCCCCCChH
Q 028370           32 DDRGWTPLHIGARKGDIKLVKQLLDEGMDVNVAAWGPKSKGVTPLHLAAQGGHLEVMDVLLERGA-DIDARTKGACGWTP  110 (210)
Q Consensus        32 d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~-~~~~~~~~~~g~tp  110 (210)
                      |..|.||||+|+..|+.+++++|+++|++++..    +..|.||||+|+..|+.+++++|++.++ +++..+..  |.||
T Consensus        22 d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~----~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~--g~t~   95 (223)
T 2f8y_A           22 DRTGETALHLAARYSRSDAAKRLLEASADANIQ----DNMGRTPLHAAVSADAQGVFQILIRNRATDLDARMHD--GTTP   95 (223)
T ss_dssp             TTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCC----CTTSCCHHHHHHHTTCHHHHHHHHHBTTSCTTCCCTT--CCCH
T ss_pred             CCCCCchHHHHHHcCCHHHHHHHHHcCCCCCCc----CCCCCCHHHHHHHcCCHHHHHHHHHcCCCCcccCCCC--CCcH
Confidence            455555555555555555555555555555544    5555555555555555555555555544 44444443  5555


Q ss_pred             HHHHHhcCCHHHHHHHHHcCCCCCCCCCCCCCCCcccccccchHHHHHHHHHhhhh
Q 028370          111 LHTAAKERKKEAVRFLIENGAFLPDDINDSRFNPPLHYCPSLEWAYEEMMRFQRES  166 (210)
Q Consensus       111 L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~~~l~~~  166 (210)
                      ||+|+..|+.+++++|+++|+++  +..+..|.||||+|+..  +..+++++|.+.
T Consensus        96 L~~A~~~~~~~~~~~Ll~~g~~~--~~~~~~g~t~L~~A~~~--~~~~~v~~Ll~~  147 (223)
T 2f8y_A           96 LILAARLAVEGMLEDLINSHADV--NAVDDLGKSALHWAAAV--NNVDAAVVLLKN  147 (223)
T ss_dssp             HHHHHHHTCHHHHHHHHHTTCCT--TCBCTTSCBHHHHHHHT--TCHHHHHHHHHT
T ss_pred             HHHHHHhCcHHHHHHHHHcCCCC--cCcCCCCCcHHHHHHHc--CCHHHHHHHHHc
Confidence            55555555555555555555533  44555555555555532  224455555444

>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system, signal sequence, ankyrin repeat, chromodomain, type I turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2 k.37.1.1 PDB: 3dep_A 1x32_A

Probab=99.92  E-value=4.9e-25  Score=161.41  Aligned_cols=113  Identities=35%  Similarity=0.436  Sum_probs=105.6

Q ss_pred             cCCCCChHHHHHHHcCCHHHHHHHHHCCCCccccccCCCCCCCcHHHHHHHCCcHHHHHHHHHcCCCCCccc-CCCCCCh
Q 028370           31 TDDRGWTPLHIGARKGDIKLVKQLLDEGMDVNVAAWGPKSKGVTPLHLAAQGGHLEVMDVLLERGADIDART-KGACGWT  109 (210)
Q Consensus        31 ~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~-~~~~g~t  109 (210)
                      .+..|.||||+|++.|+.++++.|++ |++++..    +..|+||||+|+..|+.+++++|++.|++++..+ ..  |.|
T Consensus        40 ~~~~g~t~L~~A~~~g~~~~v~~Ll~-~~~~~~~----d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~~--g~t  112 (183)
T 3deo_A           40 VVSEYETPWWTAARKADEQALSQLLE-DRDVDAV----DENGRTALLFVAGLGSDKCVRLLAEAGADLDHRDMRG--GLT  112 (183)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHTT-TSCTTCC----CTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCSSS--SCC
T ss_pred             CCCCCCCHHHHHHHcCCHHHHHHHHh-cCCCCCc----CCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCcCCCCC--CCC
Confidence            45678999999999999999999999 9999988    8999999999999999999999999999999887 55  999


Q ss_pred             HHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCCCCCcccccccc
Q 028370          110 PLHTAAKERKKEAVRFLIENGAFLPDDINDSRFNPPLHYCPSL  152 (210)
Q Consensus       110 pL~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~g~t~l~~a~~~  152 (210)
                      |||+|+..|+.+++++|+++|+++  +.+|..|.|||++|+..
T Consensus       113 pL~~A~~~~~~~~v~~Ll~~ga~~--~~~d~~g~tpl~~A~~~  153 (183)
T 3deo_A          113 ALHMAAGYVRPEVVEALVELGADI--EVEDERGLTALELAREI  153 (183)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHTCCT--TCCCTTSCCHHHHHHHH
T ss_pred             HHHHHHhcCcHHHHHHHHHcCCCC--cCCCCCCCCHHHHHHHh
Confidence            999999999999999999999965  89999999999999843

>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D

Probab=99.92  E-value=1.3e-24  Score=168.53  Aligned_cols=129  Identities=30%  Similarity=0.384  Sum_probs=90.4

Q ss_pred             hcccCCCCChHHHHHHHcCCHHHHHHHHHCCCCccccccCCCCCCCcHHHHHHHCCcHHHHHHHHHcCCC----------
Q 028370           28 VIDTDDRGWTPLHIGARKGDIKLVKQLLDEGMDVNVAAWGPKSKGVTPLHLAAQGGHLEVMDVLLERGAD----------   97 (210)
Q Consensus        28 ~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~----------   97 (210)
                      ++.+|..|+||||+|+..|+.+++++|+++|++++..    +..|.||||+|+..|+.+++++|++.|++          
T Consensus        38 ~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~----~~~g~tpL~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~  113 (282)
T 1oy3_D           38 LDLQNDLGQTALHLAAILGEASTVEKLYAAGAGVLVA----ERGGHTALHLACRVRAHTCACVLLQPRPSHPRDASDTYL  113 (282)
T ss_dssp             GGCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCSSCC----CTTSCCHHHHHTTTTCHHHHHHHSSSCCSSCCCC-----
T ss_pred             ccccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCC----CCCCCCHHHHHHHcCCcchhHhhhccCCCCchhhHHHHh
Confidence            5678888899999999999999999999888888876    66777777777777777777777766544          


Q ss_pred             -------------------------------------CCcccCCCCCChHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCC
Q 028370           98 -------------------------------------IDARTKGACGWTPLHTAAKERKKEAVRFLIENGAFLPDDINDS  140 (210)
Q Consensus        98 -------------------------------------~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~  140 (210)
                                                           ++..+..  |.||||+|+..|+.+++++|+++|+++  +..+.
T Consensus       114 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--g~t~L~~A~~~g~~~~v~~Ll~~g~~~--~~~~~  189 (282)
T 1oy3_D          114 TQSQDCTPDTSHAPAAVDSQPNPENEEEPRDEDWRLQLEAENYD--GHTPLHVAVIHKDAEMVRLLRDAGADL--NKPEP  189 (282)
T ss_dssp             ------------------------------CCCGGGGTTCCCTT--SCCHHHHHHHTTCHHHHHHHHHHTCCT--TCCCT
T ss_pred             hcccccCcchhcchhhhccccccchhhhhhhhhhhhcCCCcCCC--CcCHHHHHHHcCCHHHHHHHHHcCCCC--CCCCC
Confidence                                                 3333333  667777777777777777777777654  44443


Q ss_pred             -CCCCcccccccchHHHHHHHHHhhhh
Q 028370          141 -RFNPPLHYCPSLEWAYEEMMRFQRES  166 (210)
Q Consensus       141 -~g~t~l~~a~~~~~~~~~~~~~l~~~  166 (210)
                       .|.||||+|+..  +..+++++|.+.
T Consensus       190 ~~g~tpL~~A~~~--~~~~~v~~Ll~~  214 (282)
T 1oy3_D          190 TCGRTPLHLAVEA--QAASVLELLLKA  214 (282)
T ss_dssp             TTCCCHHHHHHHT--TCHHHHHHHHHT
T ss_pred             CCCcCHHHHHHHc--CCHHHHHHHHHc
Confidence             367777777643  335666666655

>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A

Probab=99.92  E-value=2.6e-24  Score=162.07  Aligned_cols=150  Identities=29%  Similarity=0.384  Sum_probs=118.2

Q ss_pred             cchhHHHHHHhhHHHhhhhcc-cCCCCChHHHHHHHcCCHHHHHHHHHCC--CCccccccCCCCCCCcHHHHHHHCCcHH
Q 028370           10 LGPFTLQRKASRKRFFRSVID-TDDRGWTPLHIGARKGDIKLVKQLLDEG--MDVNVAAWGPKSKGVTPLHLAAQGGHLE   86 (210)
Q Consensus        10 ~~~~~~~~~~~~~~~~~~~~~-~d~~g~t~L~~A~~~g~~~~v~~Ll~~g--~~~~~~~~~~~~~g~t~L~~A~~~~~~~   86 (210)
                      .|....+..........+++. +|..|.||||+|+..|+.+++++|+++|  ++++..    +..|.||||+|+..++.+
T Consensus        46 ~~~~~~v~~Ll~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~----~~~g~t~L~~A~~~~~~~  121 (228)
T 2dzn_A           46 FQAHEITSFLLSKMENVNLDDYPDDSGWTPFHIACSVGNLEVVKSLYDRPLKPDLNKI----TNQGVTCLHLAVGKKWFE  121 (228)
T ss_dssp             TTCHHHHHHHHHTCTTCCGGGCCCTTSCCHHHHHHHHCCHHHHHHHHSSSSCCCTTCC----CTTCCCHHHHHHHTTCHH
T ss_pred             cCCHHHHHHHHhccccccccccCCCCCCCHHHHHHHcCCHHHHHHHHhCCCCcccccC----CcCCCCHHHHHHHcCCHh
Confidence            344444444444433344555 7888999999999999999999999888  777766    788899999999999999


Q ss_pred             HHHHHHHcCCCCCcccCCCCCChHHHHHHhcCCHHHHHHHHHcC-CCCCCCCCCCCCCCcccccccchHHHHHHHHHhhh
Q 028370           87 VMDVLLERGADIDARTKGACGWTPLHTAAKERKKEAVRFLIENG-AFLPDDINDSRFNPPLHYCPSLEWAYEEMMRFQRE  165 (210)
Q Consensus        87 ~v~~Ll~~g~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~g-~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~~~l~~  165 (210)
                      ++++|++.|++++..+..  |.||||+|+..|+.+++++|++.| +++  +.+|..|.||||+|+..  +..+++++|.+
T Consensus       122 ~~~~Ll~~g~~~~~~~~~--g~t~L~~A~~~~~~~~v~~Ll~~g~~~~--~~~d~~g~t~L~~A~~~--~~~~~v~~Ll~  195 (228)
T 2dzn_A          122 VSQFLIENGASVRIKDKF--NQIPLHRAASVGSLKLIELLCGLGKSAV--NWQDKQGWTPLFHALAE--GHGDAAVLLVE  195 (228)
T ss_dssp             HHHHHHHTTCCSCCCCTT--SCCHHHHHHHTTCHHHHHHHHTTTCCCS--CCCCTTSCCHHHHHHHT--TCHHHHHHHHH
T ss_pred             HHHHHHHcCCCccccCCC--CCCHHHHHHHcCCHHHHHHHHhcCcccc--cCcCCCCCCHHHHHHHc--CCHHHHHHHHH
Confidence            999999999998888777  889999999999999999999998 744  78888999999999854  34788888884


Q ss_pred             hhhc
Q 028370          166 SFSA  169 (210)
Q Consensus       166 ~~~~  169 (210)
                      ....
T Consensus       196 ~~ga  199 (228)
T 2dzn_A          196 KYGA  199 (228)
T ss_dssp             HHCC
T ss_pred             hcCC
Confidence            4333

>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B

Probab=99.92  E-value=4.1e-25  Score=168.47  Aligned_cols=130  Identities=26%  Similarity=0.413  Sum_probs=115.2

Q ss_pred             CCCCChHHHHHHHcCCHHHHHHHHHCCCCccccccCCCCCCCcHHHHHHHCCcHHHHHHHHHcCCCCCcccCCCCCChHH
Q 028370           32 DDRGWTPLHIGARKGDIKLVKQLLDEGMDVNVAAWGPKSKGVTPLHLAAQGGHLEVMDVLLERGADIDARTKGACGWTPL  111 (210)
Q Consensus        32 d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~~g~tpL  111 (210)
                      +..|.||||.|+..|+.++++.|++.|++++..    |..|.||||+|+..|+.+++++|+++|++++..+..  |.|||
T Consensus        34 ~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~----d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~d~~--g~tpL  107 (239)
T 1ycs_B           34 NPLPLALLLDSSLEGEFDLVQRIIYEVDDPSLP----NDEGITALHNAVCAGHTEIVKFLVQFGVNVNAADSD--GWTPL  107 (239)
T ss_dssp             ---CHHHHHHHHHHTCHHHHHHHTSTTSSCCCC----CTTSCCHHHHHHHHTCHHHHHHHHHHTCCTTCCCTT--CCCHH
T ss_pred             CchhhHHHHHHHHcCCHHHHHHHHHcCCCCCCc----CCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCccCCC--CCCHH
Confidence            356899999999999999999999999999988    899999999999999999999999999999999887  99999


Q ss_pred             HHHHhcCCHHHHHHHHHcCCCCCCCCCCCCCC-CcccccccchHHHHHHHHHhhhhhhc
Q 028370          112 HTAAKERKKEAVRFLIENGAFLPDDINDSRFN-PPLHYCPSLEWAYEEMMRFQRESFSA  169 (210)
Q Consensus       112 ~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~g~-t~l~~a~~~~~~~~~~~~~l~~~~~~  169 (210)
                      |+|+..|+.+++++|+++|+++  +..+..|. ||+++|.....+..+++++|.+....
T Consensus       108 ~~A~~~~~~~~v~~Ll~~ga~~--~~~~~~~~~t~l~~a~~~~~g~~~~~~~Ll~~~a~  164 (239)
T 1ycs_B          108 HCAASCNNVQVCKFLVESGAAV--FAMTYSDMQTAADKCEEMEEGYTQCSQFLYGVQEK  164 (239)
T ss_dssp             HHHHHTTCHHHHHHHHHTTCCT--TCCCSSSCCCHHHHCCSSSTTCCCHHHHHHHHHHH
T ss_pred             HHHHHcCCHHHHHHHHHcCCCc--ceecCCCCcchHHHHHHhhhccHHHHHHHHHhhhc
Confidence            9999999999999999999966  77777776 99999954455667888888876544

>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A

Probab=99.92  E-value=4.7e-25  Score=169.37  Aligned_cols=131  Identities=28%  Similarity=0.334  Sum_probs=116.5

Q ss_pred             cCCCCChHHHHHHHcCCHHHHHHHHHCCCCccccccCCCCC-------------CCcHHHHHHHCCcHHHHHHHHH---c
Q 028370           31 TDDRGWTPLHIGARKGDIKLVKQLLDEGMDVNVAAWGPKSK-------------GVTPLHLAAQGGHLEVMDVLLE---R   94 (210)
Q Consensus        31 ~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~-------------g~t~L~~A~~~~~~~~v~~Ll~---~   94 (210)
                      +|..|.||||+|+..|+.+++++|+++|++++..    +..             |.||||+|+..|+.+++++|++   .
T Consensus        86 ~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~----~~~~~~~~~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~~~~  161 (256)
T 2etb_A           86 EFYQGHSALHIAIEKRSLQCVKLLVENGADVHLR----ACGRFFQKHQGTCFYFGELPLSLAACTKQWDVVTYLLENPHQ  161 (256)
T ss_dssp             TTTTTCCHHHHHHHTTCHHHHHHHHHTTCCTTCC----CCSGGGSCCSSSCCCSCSSHHHHHHHTTCHHHHHHHHHCSSC
T ss_pred             ccccCCCHHHHHHHcCCHHHHHHHHHcCCCCCcc----cccccccccccccccCCCCHHHHHHHcCCHHHHHHHHhcccc
Confidence            4578999999999999999999999999999887    554             9999999999999999999999   9


Q ss_pred             CCCCCcccCCCCCChHHHHHHh--cCCHH-------HHHHHHHcCCCCCC-----CCCCCCCCCcccccccchHHHHHHH
Q 028370           95 GADIDARTKGACGWTPLHTAAK--ERKKE-------AVRFLIENGAFLPD-----DINDSRFNPPLHYCPSLEWAYEEMM  160 (210)
Q Consensus        95 g~~~~~~~~~~~g~tpL~~A~~--~g~~~-------~v~~Ll~~g~~~~~-----~~~~~~g~t~l~~a~~~~~~~~~~~  160 (210)
                      |++++..+..  |.||||+|+.  .++.+       ++++|+++|++++.     +.+|..|.||||+|+..  +..+++
T Consensus       162 ga~~n~~d~~--g~TpLh~A~~~~~~~~~~~~~~~~iv~~Ll~~ga~~~~~~~~~~~~d~~g~tpL~~A~~~--g~~~~v  237 (256)
T 2etb_A          162 PASLEATDSL--GNTVLHALVMIADNSPENSALVIHMYDGLLQMGARLCPTVQLEEISNHQGLTPLKLAAKE--GKIEIF  237 (256)
T ss_dssp             CCCTTCCCTT--SCCHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHHHHSTTCCGGGCCCTTSCCHHHHHHHT--TCHHHH
T ss_pred             CCCcCccCCC--CCCHHHHHHHcccCCchhhHHHHHHHHHHHHcCCCcccccccccccCCCCCCHHHHHHHh--CCHHHH
Confidence            9999999887  9999999999  78888       99999999995422     77899999999999954  458899


Q ss_pred             HHhhhhhhc
Q 028370          161 RFQRESFSA  169 (210)
Q Consensus       161 ~~l~~~~~~  169 (210)
                      ++|.+....
T Consensus       238 ~~Ll~~g~~  246 (256)
T 2etb_A          238 RHILQREFS  246 (256)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHhCCCC
Confidence            988877544

>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1

Probab=99.92  E-value=2.1e-24  Score=169.00  Aligned_cols=147  Identities=27%  Similarity=0.376  Sum_probs=122.6

Q ss_pred             chhHHHHHHhhHHHhhhhcccCCCCChHHHHHHHcCCHHHHHHHHHCCCCccccccCCCCCCCcHHHHHHHCCcHHHHHH
Q 028370           11 GPFTLQRKASRKRFFRSVIDTDDRGWTPLHIGARKGDIKLVKQLLDEGMDVNVAAWGPKSKGVTPLHLAAQGGHLEVMDV   90 (210)
Q Consensus        11 ~~~~~~~~~~~~~~~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~   90 (210)
                      |.+..+......  ..+++.+|..|.||||+|+..|+.+++++|+++|++++..    +..|.||||+|+..|+.+++++
T Consensus        51 g~~~~v~~Ll~~--g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~----~~~g~tpL~~A~~~g~~~~v~~  124 (299)
T 1s70_B           51 GDTEEVLRLLER--GADINYANVDGLTALHQACIDDNVDMVKFLVENGANINQP----DNEGWIPLHAAASCGYLDIAEY  124 (299)
T ss_dssp             TCHHHHHHHHHH--CCCTTCBCTTCCBHHHHHHHTTCHHHHHHHHHTTCCTTCC----CTTSCCHHHHHHHHTCHHHHHH
T ss_pred             CCHHHHHHHHHc--CCCCcccCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCC----CCCCCcHHHHHHHcCCHHHHHH
Confidence            444444444332  2457788999999999999999999999999999999888    8899999999999999999999


Q ss_pred             HHHcCCCCCcccCC----------------------------------------------------------CCCChHHH
Q 028370           91 LLERGADIDARTKG----------------------------------------------------------ACGWTPLH  112 (210)
Q Consensus        91 Ll~~g~~~~~~~~~----------------------------------------------------------~~g~tpL~  112 (210)
                      |++.|++++..+..                                                          ..|.||||
T Consensus       125 Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~t~L~  204 (299)
T 1s70_B          125 LISQGAHVGAVNSEGDTPLDIAEEEAMEELLQNEVNRQGVDIEAARKEEERIMLRDARQWLNSGHINDVRHAKSGGTALH  204 (299)
T ss_dssp             HHHTTCCTTCCCTTSCCHHHHCCSHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCCCTTTCCCHHH
T ss_pred             HHhCCCCCCCcCCCCCCHHHHHHhcchHHHHHHHHhhcCCCchhhhhhhhhHHHHHHHHHHhccCcchhhhcCCCCCHHH
Confidence            99999988765432                                                          23779999


Q ss_pred             HHHhcCCHHHHHHHHHcCCCCCCCCCCCCCCCcccccccchHHHHHHHHHhhhhh
Q 028370          113 TAAKERKKEAVRFLIENGAFLPDDINDSRFNPPLHYCPSLEWAYEEMMRFQRESF  167 (210)
Q Consensus       113 ~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~~~l~~~~  167 (210)
                      +|+..|+.+++++|+++|+++  +.+|..|.||||+|+..  +..+++++|.+..
T Consensus       205 ~A~~~g~~~~v~~Ll~~g~d~--~~~d~~g~tpL~~A~~~--~~~~~v~~Ll~~g  255 (299)
T 1s70_B          205 VAAAKGYTEVLKLLIQARYDV--NIKDYDGWTPLHAAAHW--GKEEACRILVENL  255 (299)
T ss_dssp             HHHHHTCHHHHHHHHTTTCCT--TCCCTTCCCHHHHHHHT--TCHHHHHHHHHTT
T ss_pred             HHHHCCcHHHHHHHHHcCCCC--CCcCCCCCcHHHHHHhc--CCHHHHHHHHHcC
Confidence            999999999999999999965  88999999999999954  4578888888764

>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C*

Probab=99.92  E-value=1.4e-24  Score=156.93  Aligned_cols=128  Identities=37%  Similarity=0.477  Sum_probs=115.6

Q ss_pred             cCCCCChHHHHHHHcCCHHHHHHHHHCCCCccccccCCCCCCCcHHHHHHHCCcHHHHHHHHHcCCCCCcccCCCCCChH
Q 028370           31 TDDRGWTPLHIGARKGDIKLVKQLLDEGMDVNVAAWGPKSKGVTPLHLAAQGGHLEVMDVLLERGADIDARTKGACGWTP  110 (210)
Q Consensus        31 ~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~~g~tp  110 (210)
                      ....+.++|+.|++.|+.+++++|+++|++++..    +..|.||||+|+..|+.+++++|++.|++++..+..  |.||
T Consensus        10 ~~~~~~~~l~~A~~~g~~~~v~~Ll~~g~~~~~~----~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~--g~t~   83 (169)
T 2y1l_E           10 HGSDLGKKLLEAARAGRDDEVRILMANGADVNAE----DASGWTPLHLAAFNGHLEIVEVLLKNGADVNAVDHA--GMTP   83 (169)
T ss_dssp             ---CHHHHHHHHHHHTCHHHHHHHHHTTCCTTCC----CTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTT--SCCH
T ss_pred             CCCcccchHHHHHHcCCHHHHHHHHHCCCCCCCC----CCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCccCCC--CCCH
Confidence            5566789999999999999999999999999988    899999999999999999999999999999988877  9999


Q ss_pred             HHHHHhcCCHHHHHHHHHcCCCCCCCCCCCCCCCcccccccchHHHHHHHHHhhhhhh
Q 028370          111 LHTAAKERKKEAVRFLIENGAFLPDDINDSRFNPPLHYCPSLEWAYEEMMRFQRESFS  168 (210)
Q Consensus       111 L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~~~l~~~~~  168 (210)
                      ||+|+..|+.+++++|+++|+++  +.+|..|.||||+|+..  +..+++++|.+...
T Consensus        84 L~~A~~~~~~~~~~~Ll~~g~~~--~~~~~~g~t~L~~A~~~--~~~~~v~~Ll~~g~  137 (169)
T 2y1l_E           84 LRLAALFGHLEIVEVLLKNGADV--NANDMEGHTPLHLAAMF--GHLEIVEVLLKNGA  137 (169)
T ss_dssp             HHHHHHTTCHHHHHHHHHTTCCT--TCCCTTSCCHHHHHHHT--TCHHHHHHHHHTTC
T ss_pred             HHHHHHcCCHHHHHHHHHcCCCC--CCCCCCCCCHHHHHHHc--CCHHHHHHHHHcCC
Confidence            99999999999999999999966  88999999999999954  45789998887643

>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A

Probab=99.92  E-value=2.6e-24  Score=165.16  Aligned_cols=128  Identities=30%  Similarity=0.374  Sum_probs=93.9

Q ss_pred             ccCCCCChHHHHHHHcCCHHHHHHHHHCCCCccccccCCCCCCCcHHHHHHHCCcHHHHHHHHHcCC-CCCcccCCCCCC
Q 028370           30 DTDDRGWTPLHIGARKGDIKLVKQLLDEGMDVNVAAWGPKSKGVTPLHLAAQGGHLEVMDVLLERGA-DIDARTKGACGW  108 (210)
Q Consensus        30 ~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~-~~~~~~~~~~g~  108 (210)
                      ..|..|.||||+|+..|+.+++++|+++|++++..    +..|.||||+|+..|+.+++++|++.++ +++..+..  |.
T Consensus        52 ~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~----~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~--g~  125 (253)
T 1yyh_A           52 QTDRTGETALHLAARYSRSDAAKRLLEASADANIQ----DNMGRTPLHAAVSADAQGVFQILIRNRATDLDARMHD--GT  125 (253)
T ss_dssp             CCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCC----CTTSCCHHHHHHHHTCHHHHHHHHHSTTSCTTCCCTT--CC
T ss_pred             ccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCC----CCCCCCHHHHHHHcCCHHHHHHHHHcCCCCccccCCC--CC
Confidence            35777777777777777777777777777777766    7777777777777777777777777765 66666655  77


Q ss_pred             hHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCCCCCcccccccchHHHHHHHHHhhhhh
Q 028370          109 TPLHTAAKERKKEAVRFLIENGAFLPDDINDSRFNPPLHYCPSLEWAYEEMMRFQRESF  167 (210)
Q Consensus       109 tpL~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~~~l~~~~  167 (210)
                      ||||+|+..|+.+++++|++.|+++  +..+..|.||||+|+..  +..+++++|.+..
T Consensus       126 t~L~~A~~~~~~~~v~~Ll~~g~~~--~~~d~~g~t~L~~A~~~--~~~~~v~~Ll~~g  180 (253)
T 1yyh_A          126 TPLILAARLAVEGMLEDLINSHADV--NAVDDLGKSALHWAAAV--NNVDAAVVLLKNG  180 (253)
T ss_dssp             CHHHHHHHHTCSSHHHHHHHTTCCT--TCBCTTSCBHHHHHHHH--TCHHHHHHHHHTT
T ss_pred             cHHHHHHHcChHHHHHHHHHcCCCC--CCcCCCCCCHHHHHHHc--CCHHHHHHHHHcC
Confidence            7777777777777777777777754  66777777777777743  3466777776653

>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}

Probab=99.92  E-value=8.7e-25  Score=170.86  Aligned_cols=132  Identities=18%  Similarity=0.200  Sum_probs=113.6

Q ss_pred             hhcccCCCCChHHHHHHHcCCHHHHHHHHHCCCCccccccCCCCCCCcHHHHHHHCCcHHHHHHHHHcCCCCCcccCCCC
Q 028370           27 SVIDTDDRGWTPLHIGARKGDIKLVKQLLDEGMDVNVAAWGPKSKGVTPLHLAAQGGHLEVMDVLLERGADIDARTKGAC  106 (210)
Q Consensus        27 ~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~~  106 (210)
                      +++.+|..|.||||+|+..|+.+++++|+++|++++..      +|+||||+|+..|+.+++++|++.|++++..+..  
T Consensus        23 ~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~------~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~d~~--   94 (285)
T 3kea_A           23 DTFKADVHGHSASYYAIADNNVRLVCTLLNAGALKNLL------ENEFPLHQAATLEDTKIVKILLFSGLDDSQFDDK--   94 (285)
T ss_dssp             TTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTGGGSCC------TTCCHHHHHTTSSSCHHHHHHHHTTCCTTCCCTT--
T ss_pred             CCCccCCCCCCHHHHHHHcCCHHHHHHHHhCCCCCCCC------CCCCHHHHHHHcCCHHHHHHHHHCCCCCCCcCCC--
Confidence            46788999999999999999999999999999888754      3789999999999999999999999999888776  


Q ss_pred             CChHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCCC-CCcccccccchHHHHHHHHHhhhhhhcC
Q 028370          107 GWTPLHTAAKERKKEAVRFLIENGAFLPDDINDSRF-NPPLHYCPSLEWAYEEMMRFQRESFSAG  170 (210)
Q Consensus       107 g~tpL~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~g-~t~l~~a~~~~~~~~~~~~~l~~~~~~~  170 (210)
                      |.||||+|+..|+.+++++|+++|+++  +..+..| .||||+|+..  +..+++++|.+.....
T Consensus        95 g~t~L~~A~~~g~~~~v~~Ll~~ga~~--~~~~~~g~~t~L~~A~~~--~~~~~v~~Ll~~g~~~  155 (285)
T 3kea_A           95 GNTALYYAVDSGNMQTVKLFVKKNWRL--MFYGKTGWKTSFYHAVML--NDVSIVSYFLSEIPST  155 (285)
T ss_dssp             SCCHHHHHHHTTCHHHHHHHHHHCGGG--GGCSSSGGGSHHHHHHHT--TCHHHHHHHHTTSCTT
T ss_pred             CCcHHHHHHHcCCHHHHHHHHhcCCCC--CccCCCCCCCHHHHHHHc--CCHHHHHHHHhCCCcc
Confidence            899999999999999999999999965  7888888 7999999854  4478888888775443

>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis}

Probab=99.92  E-value=2.6e-24  Score=159.25  Aligned_cols=148  Identities=24%  Similarity=0.354  Sum_probs=125.2

Q ss_pred             chhHHHHHHhhHHHhhhhcccCCCCChHHHHHHHcCCHHHHHHHHHCCCCccccccCCCCCCCcHHHHHHHCCcHHHHHH
Q 028370           11 GPFTLQRKASRKRFFRSVIDTDDRGWTPLHIGARKGDIKLVKQLLDEGMDVNVAAWGPKSKGVTPLHLAAQGGHLEVMDV   90 (210)
Q Consensus        11 ~~~~~~~~~~~~~~~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~   90 (210)
                      |....+.....+ ...+++.+|..|.||||+|+..|+.+++++|+++|++++..    +..|.||||+|+..|+.+++++
T Consensus        16 g~~~~v~~ll~~-~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~----~~~g~t~l~~A~~~~~~~~~~~   90 (201)
T 3hra_A           16 RDTKKVKEILQD-TTYQVDEVDTEGNTPLNIAVHNNDIEIAKALIDRGADINLQ----NSISDSPYLYAGAQGRTEILAY   90 (201)
T ss_dssp             TCHHHHHHHHTC-TTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCC----CTTSCCHHHHHHHTTCHHHHHH
T ss_pred             ccHHHHHHHHHc-CCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCC----CCCCCCHHHHHHHcCCHHHHHH
Confidence            344444443332 23357788999999999999999999999999999999988    8999999999999999999999


Q ss_pred             HH-HcCCCCCcccCCCCCChHHHHHHhcCCHHHHHHHHHcC-CCCCCCCCCCCCCCcccccccchH---HHHHHHHHhhh
Q 028370           91 LL-ERGADIDARTKGACGWTPLHTAAKERKKEAVRFLIENG-AFLPDDINDSRFNPPLHYCPSLEW---AYEEMMRFQRE  165 (210)
Q Consensus        91 Ll-~~g~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~g-~~~~~~~~~~~g~t~l~~a~~~~~---~~~~~~~~l~~  165 (210)
                      |+ ..+++++..+..  |.||||+|+..|+.+++++|+++| +++  +.++..|.||||+|+..+.   ...+++++|.+
T Consensus        91 Ll~~~~~~~~~~~~~--g~t~L~~A~~~~~~~~v~~Ll~~g~~~~--~~~~~~g~t~L~~A~~~~~~~~~~~~~v~~Ll~  166 (201)
T 3hra_A           91 MLKHATPDLNKHNRY--GGNALIPAAEKGHIDNVKLLLEDGREDI--DFQNDFGYTALIEAVGLREGNQLYQDIVKLLME  166 (201)
T ss_dssp             HHHHSCCCTTCCCTT--SCCSHHHHHHTTCHHHHHHHHHHCCCCT--TCCCTTSCCHHHHHHHSSCCSHHHHHHHHHHHH
T ss_pred             HHhccCcccccccCC--CCcHHHHHHHcCCHHHHHHHHHcCCCCc--CCCCCCCCCHHHHHHHhccchhhHHHHHHHHHH
Confidence            99 567788888777  999999999999999999999999 754  8899999999999985432   34788888887


Q ss_pred             hh
Q 028370          166 SF  167 (210)
Q Consensus       166 ~~  167 (210)
                      ..
T Consensus       167 ~g  168 (201)
T 3hra_A          167 NG  168 (201)
T ss_dssp             TT
T ss_pred             CC
Confidence            64

>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A*

Probab=99.92  E-value=7.1e-24  Score=160.70  Aligned_cols=131  Identities=28%  Similarity=0.349  Sum_probs=90.7

Q ss_pred             hhcccCCCCChHHHHHHHcCCHHHHHHHHHCC-CCccccccCCCCCCCcHHHHHHHCCcHHHHHHHHHcCCCCCcccCCC
Q 028370           27 SVIDTDDRGWTPLHIGARKGDIKLVKQLLDEG-MDVNVAAWGPKSKGVTPLHLAAQGGHLEVMDVLLERGADIDARTKGA  105 (210)
Q Consensus        27 ~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g-~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~  105 (210)
                      +++.+|..|.||||+|+..|+.+++++|++.| .+++..    +..|.||||+|+..++.+++++|++.|++++..+.. 
T Consensus        69 ~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~----~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~-  143 (237)
T 3b7b_A           69 LVDPKDAEGSTCLHLAAKKGHYEVVQYLLSNGQMDVNCQ----DDGGWTPMIWATEYKHVDLVKLLLSKGSDINIRDNE-  143 (237)
T ss_dssp             CCCCCCTTSCCHHHHHHHTTCHHHHHHHHTTTCCCTTCC----CTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTT-
T ss_pred             CCCCCCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCcccC----CCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCccCCC-
Confidence            45556677777777777777777777777776 566655    666777777777777777777777777777666655 


Q ss_pred             CCChHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCCCCCcccccccchHHHHHHHHHhhhhh
Q 028370          106 CGWTPLHTAAKERKKEAVRFLIENGAFLPDDINDSRFNPPLHYCPSLEWAYEEMMRFQRESF  167 (210)
Q Consensus       106 ~g~tpL~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~~~l~~~~  167 (210)
                       |.||||+|+..|+.+++++|+++|+++  +..|..|.||||+|+..  +..+++++|.+..
T Consensus       144 -g~t~L~~A~~~~~~~~~~~Ll~~g~~~--~~~~~~g~t~L~~A~~~--~~~~~v~~Ll~~g  200 (237)
T 3b7b_A          144 -ENICLHWAAFSGCVDIAEILLAAKCDL--HAVNIHGDSPLHIAARE--NRYDCVVLFLSRD  200 (237)
T ss_dssp             -SCCHHHHHHHHCCHHHHHHHHTTTCCT--TCCCTTCCCHHHHHHHT--TCHHHHHHHHTTT
T ss_pred             -CCCHHHHHHHCCCHHHHHHHHHcCCCC--CCcCCCCCCHHHHHHHh--CCHhHHHHHHHcC
Confidence             777777777777777777777777744  66677777777777643  3356666666553

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major}

Probab=99.92  E-value=1.1e-24  Score=175.52  Aligned_cols=126  Identities=21%  Similarity=0.240  Sum_probs=117.9

Q ss_pred             cCCCCChHHHHHHHcC--CHHHHHHHHHCCCCccccccCCCCCCCcHHHHHHHCCcHHHHHHHHHcCCC-----CCcccC
Q 028370           31 TDDRGWTPLHIGARKG--DIKLVKQLLDEGMDVNVAAWGPKSKGVTPLHLAAQGGHLEVMDVLLERGAD-----IDARTK  103 (210)
Q Consensus        31 ~d~~g~t~L~~A~~~g--~~~~v~~Ll~~g~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~-----~~~~~~  103 (210)
                      +|..|.||||+|+..|  +.+++++|++.|++++..    +..|.||||+|+..|+.+++++|++.|++     ++..+.
T Consensus       134 ~~~~g~t~L~~A~~~g~~~~~~v~~Ll~~ga~~~~~----d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~  209 (364)
T 3ljn_A          134 KHCKGQTALHWCVGLGPEYLEMIKILVQLGASPTAK----DKADETPLMRAMEFRNREALDLMMDTVPSKSSLRLDYANK  209 (364)
T ss_dssp             EEESCCCHHHHHHHSCGGGHHHHHHHHHHTCCTTCC----CTTSCCHHHHHHHTTCHHHHHHHHHHCSCSSSCCTTCCCT
T ss_pred             CCCCCCCHHHHHHHcCCchHHHHHHHHHcCCCCccc----CCCCCCHHHHHHHcCCHHHHHHHHhcccccccccccccCC
Confidence            7889999999999999  999999999999999988    89999999999999999999999999998     888877


Q ss_pred             CCCCChHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCCCCCcccccccchHHHHHHHHHhhhh
Q 028370          104 GACGWTPLHTAAKERKKEAVRFLIENGAFLPDDINDSRFNPPLHYCPSLEWAYEEMMRFQRES  166 (210)
Q Consensus       104 ~~~g~tpL~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~~~l~~~  166 (210)
                      .  |.||||+|+..|+.+++++|+++|+++  +.+|..|.|||++|+..  +..+++++|.+.
T Consensus       210 ~--g~t~L~~A~~~g~~~~v~~Ll~~gad~--~~~d~~g~tpL~~A~~~--g~~~~v~~Ll~~  266 (364)
T 3ljn_A          210 Q--GNSHLHWAILINWEDVAMRFVEMGIDV--NMEDNEHTVPLYLSVRA--AMVLLTKELLQK  266 (364)
T ss_dssp             T--CCCTTHHHHTTTCHHHHHHHHTTTCCT--TCCCTTSCCHHHHHHHT--CCHHHHHHHHHH
T ss_pred             C--CCcHHHHHHHcCCHHHHHHHHHcCCCC--CCCCCCCCCHHHHHHHh--ChHHHHHHHHHc
Confidence            7  999999999999999999999999966  89999999999999954  458899988886

>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A

Probab=99.92  E-value=7.9e-25  Score=167.49  Aligned_cols=127  Identities=31%  Similarity=0.405  Sum_probs=114.2

Q ss_pred             cCCCCChHHHHHHHcCCHHHHHHHHHCCCCccccccCCCCCCCcHHHHHHHCCcHHHHHHHHHcCCCCCccc-CCCCCCh
Q 028370           31 TDDRGWTPLHIGARKGDIKLVKQLLDEGMDVNVAAWGPKSKGVTPLHLAAQGGHLEVMDVLLERGADIDART-KGACGWT  109 (210)
Q Consensus        31 ~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~-~~~~g~t  109 (210)
                      .+..|.||||+|++.|+.++++.|++ |++++..    +..|+||||+|+..|+.+++++|++.|++++..+ ..  |.|
T Consensus        41 ~~~~g~t~L~~A~~~g~~~~v~~Ll~-~~~~~~~----d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~~--g~t  113 (244)
T 3ui2_A           41 VVSEYETPWWTAARKADEQALSQLLE-DRDVDAV----DENGRTALLFVAGLGSDKCVRLLAEAGADLDHRDMRG--GLT  113 (244)
T ss_dssp             HHHHHHHHHHHHHTTTCHHHHHHTTT-TCCTTCB----CTTSCBHHHHHHHHTCHHHHHHHHHTTCCTTCCCSSS--CCC
T ss_pred             cccCCCCHHHHHHHcCCHHHHHHHHc-CCCCCCc----CCCCCCHHHHHHHCCCHHHHHHHHHcCCCCCcCCCCC--CCC
Confidence            44578999999999999999999999 9999988    8999999999999999999999999999999887 55  999


Q ss_pred             HHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCCCCCcccccccc--------------hHHHHHHHHHhhhh
Q 028370          110 PLHTAAKERKKEAVRFLIENGAFLPDDINDSRFNPPLHYCPSL--------------EWAYEEMMRFQRES  166 (210)
Q Consensus       110 pL~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~g~t~l~~a~~~--------------~~~~~~~~~~l~~~  166 (210)
                      |||+|+..|+.+++++|+++|+++  +.+|..|.||||+|+..              ..+..+++++|.+.
T Consensus       114 ~L~~A~~~g~~~~v~~Ll~~ga~~--~~~d~~g~t~l~~A~~~~~~~~~~~~l~~a~~~g~~~iv~~L~~~  182 (244)
T 3ui2_A          114 ALHMAAGYVRPEVVEALVELGADI--EVEDERGLTALELAREILKTTPKGNPMQFGRRIGLEKVINVLEGQ  182 (244)
T ss_dssp             HHHHHHHTTCHHHHHHHHHTTCCT--TCCCTTCCCHHHHHHHHHTTCCCSSHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHcCCHHHHHHHHHCCCCC--CCCCCCCCcHHHHHHHHHhccCCCCHHHHHHHcChHHHHHHHHHh
Confidence            999999999999999999999966  88999999999999743              33567777777764

>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis}

Probab=99.91  E-value=5.5e-24  Score=157.45  Aligned_cols=145  Identities=24%  Similarity=0.362  Sum_probs=123.9

Q ss_pred             chhHHHHHHhhHHH-------hhhhcccCCCCChHHHHHHHcCCHHHHHHHH-HCCCCccccccCCCCCCCcHHHHHHHC
Q 028370           11 GPFTLQRKASRKRF-------FRSVIDTDDRGWTPLHIGARKGDIKLVKQLL-DEGMDVNVAAWGPKSKGVTPLHLAAQG   82 (210)
Q Consensus        11 ~~~~~~~~~~~~~~-------~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll-~~g~~~~~~~~~~~~~g~t~L~~A~~~   82 (210)
                      +|+..+.+......       ..+++.+|..|.||||+|+..|+.+++++|+ ..+++++..    +..|.||||+|+..
T Consensus        41 t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~----~~~g~t~L~~A~~~  116 (201)
T 3hra_A           41 TPLNIAVHNNDIEIAKALIDRGADINLQNSISDSPYLYAGAQGRTEILAYMLKHATPDLNKH----NRYGGNALIPAAEK  116 (201)
T ss_dssp             CHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHSCCCTTCC----CTTSCCSHHHHHHT
T ss_pred             CHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhccCcccccc----cCCCCcHHHHHHHc
Confidence            45555544433332       3456678899999999999999999999999 566788877    89999999999999


Q ss_pred             CcHHHHHHHHHcC-CCCCcccCCCCCChHHHHHHhcCC-----HHHHHHHHHcCCCCCCCCCCCCCCCcccccccchHHH
Q 028370           83 GHLEVMDVLLERG-ADIDARTKGACGWTPLHTAAKERK-----KEAVRFLIENGAFLPDDINDSRFNPPLHYCPSLEWAY  156 (210)
Q Consensus        83 ~~~~~v~~Ll~~g-~~~~~~~~~~~g~tpL~~A~~~g~-----~~~v~~Ll~~g~~~~~~~~~~~g~t~l~~a~~~~~~~  156 (210)
                      |+.+++++|++.| ++++..+..  |.||||+|+..++     .+++++|+++|+++  +.+|..|.||+++|+.  .+.
T Consensus       117 ~~~~~v~~Ll~~g~~~~~~~~~~--g~t~L~~A~~~~~~~~~~~~~v~~Ll~~ga~~--~~~~~~g~t~l~~A~~--~~~  190 (201)
T 3hra_A          117 GHIDNVKLLLEDGREDIDFQNDF--GYTALIEAVGLREGNQLYQDIVKLLMENGADQ--SIKDNSGRTAMDYANQ--KGY  190 (201)
T ss_dssp             TCHHHHHHHHHHCCCCTTCCCTT--SCCHHHHHHHSSCCSHHHHHHHHHHHHTTCCT--TCCCTTSCCHHHHHHH--HTC
T ss_pred             CCHHHHHHHHHcCCCCcCCCCCC--CCCHHHHHHHhccchhhHHHHHHHHHHCCCCC--CccCCCCCCHHHHHHH--cCC
Confidence            9999999999998 899988877  9999999999988     99999999999966  8899999999999994  455


Q ss_pred             HHHHHHhhh
Q 028370          157 EEMMRFQRE  165 (210)
Q Consensus       157 ~~~~~~l~~  165 (210)
                      .+++++|.+
T Consensus       191 ~~~~~~Ll~  199 (201)
T 3hra_A          191 TEISKILAQ  199 (201)
T ss_dssp             HHHHHHHHT
T ss_pred             HhHHHHHHh
Confidence            788888765

>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A 1mx2_A 1mx6_A

Probab=99.91  E-value=1.3e-24  Score=155.71  Aligned_cols=125  Identities=26%  Similarity=0.369  Sum_probs=114.2

Q ss_pred             CCChHHHHHHHcCCHHHHHHHHHCCCCccccccCCCCCCCcHHHHHHHCCcHHHHHHHHHcCCCCCcccCCCCCChHHHH
Q 028370           34 RGWTPLHIGARKGDIKLVKQLLDEGMDVNVAAWGPKSKGVTPLHLAAQGGHLEVMDVLLERGADIDARTKGACGWTPLHT  113 (210)
Q Consensus        34 ~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~~g~tpL~~  113 (210)
                      ...||||.|+..|+.+++++|+++|++++..    +..|.||||+|+. |+.+++++|++.|++++..+..  |.||||+
T Consensus         4 ~~~~~L~~A~~~g~~~~v~~Ll~~~~~~~~~----~~~g~t~L~~A~~-~~~~~v~~Ll~~g~~~~~~~~~--g~t~L~~   76 (162)
T 1ihb_A            4 PWGNELASAAARGDLEQLTSLLQNNVNVNAQ----NGFGRTALQVMKL-GNPEIARRLLLRGANPDLKDRT--GFAVIHD   76 (162)
T ss_dssp             -CHHHHHHHHHHTCHHHHHHHTTSCCCTTCC----CTTSCCHHHHCCS-SCHHHHHHHHHTTCCTTCCCTT--SCCHHHH
T ss_pred             hHhhHHHHHHHcCCHHHHHHHHhCCCCcccc----CccCccHHHHHHc-CcHHHHHHHHHcCCCCCCCCCC--CCCHHHH
Confidence            4569999999999999999999999999888    8999999999999 9999999999999999988877  9999999


Q ss_pred             HHhcCCHHHHHHHHHcCCCCCCCCCCCCCCCcccccccchHHHHHHHHHhhhhhhc
Q 028370          114 AAKERKKEAVRFLIENGAFLPDDINDSRFNPPLHYCPSLEWAYEEMMRFQRESFSA  169 (210)
Q Consensus       114 A~~~g~~~~v~~Ll~~g~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~~~l~~~~~~  169 (210)
                      |+..|+.+++++|+++|+++  +.++..|.||||+|+..  +..+++++|.+....
T Consensus        77 A~~~~~~~~v~~Ll~~g~~~--~~~~~~g~t~L~~A~~~--~~~~~v~~Ll~~g~~  128 (162)
T 1ihb_A           77 AARAGFLDTLQTLLEFQADV--NIEDNEGNLPLHLAAKE--GHLRVVEFLVKHTAS  128 (162)
T ss_dssp             HHHHTCHHHHHHHHHTTCCT--TCCCTTSCCHHHHHHHT--TCHHHHHHHHHHSCC
T ss_pred             HHHcCCHHHHHHHHHcCCCC--CCcCCCCCCHHHHHHHc--CCHHHHHHHHHccCC
Confidence            99999999999999999965  88999999999999954  457899998887554

>1n0q_A 3ANK, 3 ankyrin repeats; structural protein; 1.26A {} SCOP: k.37.1.1

Probab=99.91  E-value=4.9e-24  Score=139.13  Aligned_cols=93  Identities=54%  Similarity=0.900  Sum_probs=87.9

Q ss_pred             CCChHHHHHHHcCCHHHHHHHHHCCCCccccccCCCCCCCcHHHHHHHCCcHHHHHHHHHcCCCCCcccCCCCCChHHHH
Q 028370           34 RGWTPLHIGARKGDIKLVKQLLDEGMDVNVAAWGPKSKGVTPLHLAAQGGHLEVMDVLLERGADIDARTKGACGWTPLHT  113 (210)
Q Consensus        34 ~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~~g~tpL~~  113 (210)
                      +|+||||+|+..|+.+++++|++.|++++..    |..|.||||+|+..|+.+++++|++.|++++..+.+  |.||||+
T Consensus         1 ~g~t~L~~A~~~~~~~~v~~Ll~~g~~~n~~----d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~d~~--g~t~l~~   74 (93)
T 1n0q_A            1 NGRTPLHLAARNGHLEVVKLLLEAGADVNAK----DKNGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKN--GRTPLHL   74 (93)
T ss_dssp             --CCHHHHHHHHTCHHHHHHHHHTTCCTTCC----CTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTT--SCCHHHH
T ss_pred             CCCcHHHHHHHcCCHHHHHHHHHcCCCCccc----CCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCccCCC--CCCHHHH
Confidence            4899999999999999999999999999988    899999999999999999999999999999998877  9999999


Q ss_pred             HHhcCCHHHHHHHHHcCCC
Q 028370          114 AAKERKKEAVRFLIENGAF  132 (210)
Q Consensus       114 A~~~g~~~~v~~Ll~~g~~  132 (210)
                      |+..|+.+++++|+++|++
T Consensus        75 A~~~~~~~~~~~Ll~~ga~   93 (93)
T 1n0q_A           75 AARNGHLEVVKLLLEAGAY   93 (93)
T ss_dssp             HHHTTCHHHHHHHHHTTCC
T ss_pred             HHHcCCHHHHHHHHHcCCC
Confidence            9999999999999999983

>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens}

Probab=99.91  E-value=9.1e-24  Score=165.04  Aligned_cols=129  Identities=28%  Similarity=0.341  Sum_probs=87.9

Q ss_pred             hhcccCCCCChHHHHHHHcCCHHHHHHHHHCCCCccccccCCCCCCCcHHHHHHHCCcHHHHHHHHHcCCCCCcccCCCC
Q 028370           27 SVIDTDDRGWTPLHIGARKGDIKLVKQLLDEGMDVNVAAWGPKSKGVTPLHLAAQGGHLEVMDVLLERGADIDARTKGAC  106 (210)
Q Consensus        27 ~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~~  106 (210)
                      +++.+|..|.||||+|+..|+.+++++|+++|++++..    +..|.||||+|+..|+.+++++|++.|++++..+ +  
T Consensus        84 ~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~----~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~-~--  156 (285)
T 3d9h_A           84 AVNIITADHVSPLHEACLGGHLSCVKILLKHGAQVNGV----TADWHTPLFNACVSGSWDCVNLLLQHGASVQPES-D--  156 (285)
T ss_dssp             CSCEECTTCCCHHHHHHHTTCHHHHHHHHHTTCCSSCC----CTTCCCHHHHHHHHTCHHHHHHHHHTTCCSSCSC-T--
T ss_pred             CCCCcCCCCCCHHHHHHHCCcHHHHHHHHHCCCCCCCC----CCCCCCHHHHHHHcCHHHHHHHHHHCCCCCCCCC-C--
Confidence            34556667777777777777777777777777777666    6667777777777777777777777776665432 2  


Q ss_pred             CChHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCCCCCcccccccchHHHHHHHHHhhhh
Q 028370          107 GWTPLHTAAKERKKEAVRFLIENGAFLPDDINDSRFNPPLHYCPSLEWAYEEMMRFQRES  166 (210)
Q Consensus       107 g~tpL~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~~~l~~~  166 (210)
                      |.||||+|+..|+.+++++|+++|+++  +.++..|.|||++|+..  +..+++++|.+.
T Consensus       157 g~t~L~~A~~~g~~~~v~~Ll~~g~~~--~~~d~~g~t~L~~A~~~--~~~~~v~~Ll~~  212 (285)
T 3d9h_A          157 LASPIHEAARRGHVECVNSLIAYGGNI--DHKISHLGTPLYLACEN--QQRACVKKLLES  212 (285)
T ss_dssp             TSCHHHHHHHHTCHHHHHHHHHTTCCT--TCCBTTTBCHHHHHHHT--TCHHHHHHHHHT
T ss_pred             CCCHHHHHHHcCCHHHHHHHHHCCCCC--CCcCCCCCCHHHHHHHc--CcHHHHHHHHHC
Confidence            667777777777777777777777744  66677777777777743  335666666655

>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D

Probab=99.91  E-value=4.9e-24  Score=165.25  Aligned_cols=119  Identities=33%  Similarity=0.413  Sum_probs=99.4

Q ss_pred             hhhcccCCCCChHHHHHHHcCCHHHHHHHHHCCCCccccccCCCC-CCCcHHHHHHHCCcHHHHHHHHHcCCCCCcccCC
Q 028370           26 RSVIDTDDRGWTPLHIGARKGDIKLVKQLLDEGMDVNVAAWGPKS-KGVTPLHLAAQGGHLEVMDVLLERGADIDARTKG  104 (210)
Q Consensus        26 ~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~-~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~  104 (210)
                      .+++.+|..|.||||+|+..|+.+++++|+++|++++..    +. .|.||||+|+..|+.+++++|+++|++++.++..
T Consensus       149 ~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~----~~~~g~tpL~~A~~~~~~~~v~~Ll~~gad~~~~d~~  224 (282)
T 1oy3_D          149 LQLEAENYDGHTPLHVAVIHKDAEMVRLLRDAGADLNKP----EPTCGRTPLHLAVEAQAASVLELLLKAGADPTARMYG  224 (282)
T ss_dssp             GGTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHTCCTTCC----CTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTT
T ss_pred             hcCCCcCCCCcCHHHHHHHcCCHHHHHHHHHcCCCCCCC----CCCCCcCHHHHHHHcCCHHHHHHHHHcCCCCcccccC
Confidence            346778999999999999999999999999999999987    54 5999999999999999999999999999999877


Q ss_pred             CCCChHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCCCCCcccccccc
Q 028370          105 ACGWTPLHTAAKERKKEAVRFLIENGAFLPDDINDSRFNPPLHYCPSL  152 (210)
Q Consensus       105 ~~g~tpL~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~g~t~l~~a~~~  152 (210)
                        |.||||+|+..|+.+++++|+++|+++  +.++..|.||+++|.+.
T Consensus       225 --g~tpL~~A~~~~~~~~v~~Ll~~ga~~--~~~~~~g~tpl~~a~~~  268 (282)
T 1oy3_D          225 --GRTPLGSALLRPNPILARLLRAHGAPE--PEDGGDKLSPCSSSGSD  268 (282)
T ss_dssp             --SCCHHHHHHTSSCHHHHHHHHHTTCCC--CCCC-------------
T ss_pred             --CCCHHHHHHHcCCcHHHHHHHHcCCCc--CcCCCcccccccccCCc
Confidence              999999999999999999999999966  89999999999999843

>4hbd_A KN motif and ankyrin repeat domain-containing Pro; structural genomics consortium, SGC, protein binding; 1.72A {Homo sapiens}

Probab=99.91  E-value=2.1e-24  Score=167.94  Aligned_cols=131  Identities=24%  Similarity=0.319  Sum_probs=119.6

Q ss_pred             hhcccCCCCChHHHHHH-----HcCCHHHHHHHHHCCCCccccccCCCCCCCcHHHHHHHCCcHHHHHHHHHcCCCCCcc
Q 028370           27 SVIDTDDRGWTPLHIGA-----RKGDIKLVKQLLDEGMDVNVAAWGPKSKGVTPLHLAAQGGHLEVMDVLLERGADIDAR  101 (210)
Q Consensus        27 ~~~~~d~~g~t~L~~A~-----~~g~~~~v~~Ll~~g~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~  101 (210)
                      +++.+|..|.||||+|+     ..++.++++.|++.|.+.+..    +..|.||||+|+..|+.+++++|++.|++++.+
T Consensus       137 ~~~~~~~~g~tpL~~a~~~~~~~~~~~~~v~~Ll~~g~~~~~~----~~~g~tpLh~A~~~g~~~~v~~Ll~~gad~n~~  212 (276)
T 4hbd_A          137 KVDKQNRAGYSPIMLTALATLKTQDDIETVLQLFRLGNINAKA----SQAGQTALMLAVSHGRVDVVKALLACEADVNVQ  212 (276)
T ss_dssp             CTTCCCTTSCCHHHHGGGCCCCSHHHHHHHHHHHHHSCTTCCC----TTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCC
T ss_pred             cCCCCCCCCCCHHHHHHHHHhhhhhhHHHHHHHHHcCCCcccc----CCCCCCHHHHHHHcCCHHHHHHHHhCCCCCCCC
Confidence            56778889999999999     678999999999999888777    888999999999999999999999999999999


Q ss_pred             cCCCCCChHHHHHHhcCCHHHHHHHHH-cCCCCCCCCCCCCCCCcccccccchHHHHHHHHHhhhhh
Q 028370          102 TKGACGWTPLHTAAKERKKEAVRFLIE-NGAFLPDDINDSRFNPPLHYCPSLEWAYEEMMRFQRESF  167 (210)
Q Consensus       102 ~~~~~g~tpL~~A~~~g~~~~v~~Ll~-~g~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~~~l~~~~  167 (210)
                      +..  |.||||+|+..|+.+++++|++ .|+++  +.+|..|.|||++|+.  .+..+++++|.+..
T Consensus       213 d~~--G~TpLh~A~~~g~~~iv~~Ll~~~gad~--~~~d~~g~TpL~~A~~--~g~~~iv~~Ll~~~  273 (276)
T 4hbd_A          213 DDD--GSTALMCACEHGHKEIAGLLLAVPSCDI--SLTDRDGSTALMVALD--AGQSEIASMLYSRM  273 (276)
T ss_dssp             CTT--SCCHHHHHHHHTCHHHHHHHHTSTTCCT--TCCCTTSCCHHHHHHH--HTCHHHHHHHHHHC
T ss_pred             CCC--CCCHHHHHHHCCCHHHHHHHHhcCCCCC--cCcCCCCCCHHHHHHH--cCCHHHHHHHHhcc
Confidence            887  9999999999999999999999 89965  8899999999999994  45588998888764

>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A

Probab=99.91  E-value=1e-24  Score=167.47  Aligned_cols=140  Identities=26%  Similarity=0.249  Sum_probs=116.8

Q ss_pred             hhhcc----cCCCCChHHHHHHHc---CCHHHHHHHHHCCCCccccc-------cCCCCCCCcHHHHHHHCCcHHHHHHH
Q 028370           26 RSVID----TDDRGWTPLHIGARK---GDIKLVKQLLDEGMDVNVAA-------WGPKSKGVTPLHLAAQGGHLEVMDVL   91 (210)
Q Consensus        26 ~~~~~----~d~~g~t~L~~A~~~---g~~~~v~~Ll~~g~~~~~~~-------~~~~~~g~t~L~~A~~~~~~~~v~~L   91 (210)
                      .+++.    +|..|+||||+|+..   |+.+++++|++.|++++...       ...+..|.||||+|+..|+.+++++|
T Consensus        30 ~~i~~~~~~~d~~g~t~L~~A~~~~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~~~~~d~~g~t~L~~A~~~g~~~~v~~L  109 (256)
T 2etb_A           30 KYLTDSAYTEGSTGKTCLMKAVLNLQDGVNACIMPLLQIDKDSGNPKPLVNAQCTDEFYQGHSALHIAIEKRSLQCVKLL  109 (256)
T ss_dssp             CCTTSGGGSBTTTTBCHHHHHHHTCBTTBCTTHHHHHHHHHHTTCSSCGGGCCCCSTTTTTCCHHHHHHHTTCHHHHHHH
T ss_pred             CCcccccccCCCCCCCHHHHHHHccccchHHHHHHHHhcCCcccchhhhcccccccccccCCCHHHHHHHcCCHHHHHHH
Confidence            34555    799999999999999   99999999999987765320       01146799999999999999999999


Q ss_pred             HHcCCCCCcccCC-----------CCCChHHHHHHhcCCHHHHHHHHH---cCCCCCCCCCCCCCCCcccccccchHHHH
Q 028370           92 LERGADIDARTKG-----------ACGWTPLHTAAKERKKEAVRFLIE---NGAFLPDDINDSRFNPPLHYCPSLEWAYE  157 (210)
Q Consensus        92 l~~g~~~~~~~~~-----------~~g~tpL~~A~~~g~~~~v~~Ll~---~g~~~~~~~~~~~g~t~l~~a~~~~~~~~  157 (210)
                      ++.|++++..+..           ..|.||||+|+..|+.+++++|++   +|+++  +.+|..|.||||+|+..+.+..
T Consensus       110 l~~ga~~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~~~~ga~~--n~~d~~g~TpLh~A~~~~~~~~  187 (256)
T 2etb_A          110 VENGADVHLRACGRFFQKHQGTCFYFGELPLSLAACTKQWDVVTYLLENPHQPASL--EATDSLGNTVLHALVMIADNSP  187 (256)
T ss_dssp             HHTTCCTTCCCCSGGGSCCSSSCCCSCSSHHHHHHHTTCHHHHHHHHHCSSCCCCT--TCCCTTSCCHHHHHHHHCCSCH
T ss_pred             HHcCCCCCcccccccccccccccccCCCCHHHHHHHcCCHHHHHHHHhccccCCCc--CccCCCCCCHHHHHHHcccCCc
Confidence            9999999987652           138999999999999999999999   89966  8999999999999996333344


Q ss_pred             H-------HHHHhhhhh
Q 028370          158 E-------MMRFQRESF  167 (210)
Q Consensus       158 ~-------~~~~l~~~~  167 (210)
                      +       ++++|.+..
T Consensus       188 ~~~~~~~~iv~~Ll~~g  204 (256)
T 2etb_A          188 ENSALVIHMYDGLLQMG  204 (256)
T ss_dssp             HHHHHHHHHHHHHHHHH
T ss_pred             hhhHHHHHHHHHHHHcC
Confidence            5       778877763

>1awc_B Protein (GA binding protein beta 1); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: d.211.1.1

Probab=99.91  E-value=4.7e-24  Score=151.63  Aligned_cols=122  Identities=34%  Similarity=0.404  Sum_probs=111.4

Q ss_pred             CChHHHHHHHcCCHHHHHHHHHCCCCccccccCCCCCCCcHHHHHHHCCcHHHHHHHHHcCCCCCcccCCCCCChHHHHH
Q 028370           35 GWTPLHIGARKGDIKLVKQLLDEGMDVNVAAWGPKSKGVTPLHLAAQGGHLEVMDVLLERGADIDARTKGACGWTPLHTA  114 (210)
Q Consensus        35 g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~~g~tpL~~A  114 (210)
                      ..|+|+.|++.|+.+++++|++.|++++ .    +..|.||||+|+..|+.+++++|++.|++++..+..  |.||||+|
T Consensus         2 ~~~~L~~A~~~g~~~~v~~Ll~~g~~~~-~----~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~--g~t~L~~A   74 (153)
T 1awc_B            2 LGKKLLEAARAGQDDEVRILMANGAPFT-T----DWLGTSPLHLAAQYGHFSTTEVLLRAGVSRDARTKV--DRTPLHMA   74 (153)
T ss_dssp             HHHHHHHHHHHTCHHHHHHHHHHTCCCC-C----CTTCCCHHHHHHHHTCHHHHHHHHTTTCCTTCCCTT--CCCHHHHH
T ss_pred             ccHHHHHHHHcCCHHHHHHHHHcCCCCC-c----CCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCCCCC--CCCHHHHH
Confidence            4689999999999999999999999875 3    788999999999999999999999999999988877  99999999


Q ss_pred             HhcCCHHHHHHHHHcCCCCCCCCCCCCCCCcccccccchHHHHHHHHHhhhhh
Q 028370          115 AKERKKEAVRFLIENGAFLPDDINDSRFNPPLHYCPSLEWAYEEMMRFQRESF  167 (210)
Q Consensus       115 ~~~g~~~~v~~Ll~~g~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~~~l~~~~  167 (210)
                      +..|+.+++++|+++|+++  +.+|..|.||||+|+..  +..+++++|.+..
T Consensus        75 ~~~~~~~~v~~Ll~~g~~~--~~~~~~g~t~L~~A~~~--~~~~~v~~Ll~~g  123 (153)
T 1awc_B           75 ASEGHANIVEVLLKHGADV--NAKDMLKMTALHWATEH--NHQEVVELLIKYG  123 (153)
T ss_dssp             HHHTCHHHHHHHHTTTCCT--TCCCTTSCCHHHHHHHT--TCHHHHHHHHHTT
T ss_pred             HHcChHHHHHHHHHcCCCC--CCCCCCCCCHHHHHHHc--CCHHHHHHHHHcC
Confidence            9999999999999999966  88999999999999954  4578999888764

>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E

Probab=99.91  E-value=1.7e-24  Score=164.36  Aligned_cols=131  Identities=24%  Similarity=0.307  Sum_probs=116.9

Q ss_pred             hhcccCCCCChHHHHHHHcCCHHHHHHHHHCCCCccccccCCCCCCCcHHHHHHHCCcHHHHHHHHHcCCCC------Cc
Q 028370           27 SVIDTDDRGWTPLHIGARKGDIKLVKQLLDEGMDVNVAAWGPKSKGVTPLHLAAQGGHLEVMDVLLERGADI------DA  100 (210)
Q Consensus        27 ~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~------~~  100 (210)
                      +++.+|..|.||||+|+..|+.+++++|+++|++++..    +..|.||||+|+..|+.+++++|++.|+++      +.
T Consensus        37 ~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~----~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~  112 (236)
T 1ikn_D           37 FLNFQNNLQQTPLHLAVITNQPEIAEALLGAGCDPELR----DFRGNTPLHLACEQGCLASVGVLTQSCTTPHLHSILKA  112 (236)
T ss_dssp             CCCCCCTTCCCHHHHHHHTTCHHHHHCCCSCCCCSCCC----CTTCCCHHHHHHHHTCHHHHHHHHHSTTTTSSSCGGGC
T ss_pred             HhhccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCc----CCCCCCHHHHHHHcCCHHHHHHHHhcccchhHHHHhhc
Confidence            46778999999999999999999999999999999988    899999999999999999999999998763      34


Q ss_pred             ccCCCCCChHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCC-CCCCcccccccchHHHHHHHHHhhhhh
Q 028370          101 RTKGACGWTPLHTAAKERKKEAVRFLIENGAFLPDDINDS-RFNPPLHYCPSLEWAYEEMMRFQRESF  167 (210)
Q Consensus       101 ~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~-~g~t~l~~a~~~~~~~~~~~~~l~~~~  167 (210)
                      .+..  |.||||+|+..|+.+++++|+++|+++  +.++. .|.||||+|+..  +..+++++|.+..
T Consensus       113 ~~~~--g~t~L~~A~~~~~~~~v~~Ll~~g~~~--~~~~~~~g~tpL~~A~~~--~~~~~v~~Ll~~g  174 (236)
T 1ikn_D          113 TNYN--GHTCLHLASIHGYLGIVELLVSLGADV--NAQEPCNGRTALHLAVDL--QNPDLVSLLLKCG  174 (236)
T ss_dssp             CCTT--CCCHHHHHHHTTCHHHHHHHHHHTCCT--TCCCTTTCCCHHHHHHHT--TCHHHHHHHHTTT
T ss_pred             cCCC--CCCHHHHHHHcCCHHHHHHHHHcCCCC--CCCCCCCCCCHHHHHHHc--CCHHHHHHHHHcC
Confidence            4444  999999999999999999999999966  77777 999999999954  4578999998763

>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A

Probab=99.91  E-value=2.7e-23  Score=157.72  Aligned_cols=133  Identities=26%  Similarity=0.299  Sum_probs=113.9

Q ss_pred             hhhhcccCCCCChHHHHHHHcCCHHHHHHHHHCCCCccccccCCCCCCCcHHHHHHHCCcHHHHHHHHHcCC----CCCc
Q 028370           25 FRSVIDTDDRGWTPLHIGARKGDIKLVKQLLDEGMDVNVAAWGPKSKGVTPLHLAAQGGHLEVMDVLLERGA----DIDA  100 (210)
Q Consensus        25 ~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~----~~~~  100 (210)
                      ..+++.+|..|.||||+|+..|+.+++++|++.|++++..    +..|.||||+|+..++.+++++|++.++    +++.
T Consensus        36 ~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~----~~~g~t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~  111 (241)
T 1k1a_A           36 GRELDIYNNLRQTPLHLAVITTLPSVVRLLVTAGASPMAL----DRHGQTAAHLACEHRSPTCLRALLDSAAPGTLDLEA  111 (241)
T ss_dssp             TCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCC----CTTSCCHHHHHHHTTCHHHHHHHHHHSCTTSCCTTC
T ss_pred             CCCCCcccccCCCHHHHHHHcCCHHHHHHHHHcCCCcccc----CCCCCCHHHHHHHcCCHHHHHHHHHcCCCccccccc
Confidence            3456778889999999999999999999999999999887    8899999999999999999999999887    6666


Q ss_pred             ccCCCCCChHHHHHHhcCCHHHHHHHHHcCCCCCCCCCC-CCCCCcccccccchHHHHHHHHHhhhhh
Q 028370          101 RTKGACGWTPLHTAAKERKKEAVRFLIENGAFLPDDIND-SRFNPPLHYCPSLEWAYEEMMRFQRESF  167 (210)
Q Consensus       101 ~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~g~~~~~~~~~-~~g~t~l~~a~~~~~~~~~~~~~l~~~~  167 (210)
                      .+..  |.||||+|+..|+.+++++|+++|+++  +..+ ..|.||||+|+..  +..+++++|.+..
T Consensus       112 ~~~~--g~t~L~~A~~~~~~~~~~~Ll~~g~~~--~~~~~~~g~t~L~~A~~~--~~~~~v~~Ll~~g  173 (241)
T 1k1a_A          112 RNYD--GLTALHVAVNTECQETVQLLLERGADI--DAVDIKSGRSPLIHAVEN--NSLSMVQLLLQHG  173 (241)
T ss_dssp             CCTT--SCCHHHHHHHHTCHHHHHHHHHTTCCT--TCCCTTTCCCHHHHHHHT--TCHHHHHHHHHTT
T ss_pred             cCcC--CCcHHHHHHHcCCHHHHHHHHHcCCCc--ccccccCCCcHHHHHHHc--CCHHHHHHHHHcC
Confidence            6665  899999999999999999999999965  6666 7889999999854  4478888888763

>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens}

Probab=99.91  E-value=1.5e-23  Score=163.88  Aligned_cols=132  Identities=27%  Similarity=0.446  Sum_probs=118.5

Q ss_pred             hhhcccCCCCChHHHHHHHcCCHHHHHHHHHCCCCccccccCCCCCCCcHHHHHHHCCcHHHHHHHHHcCCCCCcccCCC
Q 028370           26 RSVIDTDDRGWTPLHIGARKGDIKLVKQLLDEGMDVNVAAWGPKSKGVTPLHLAAQGGHLEVMDVLLERGADIDARTKGA  105 (210)
Q Consensus        26 ~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~  105 (210)
                      ..++.+|..|+||||+|+..|+.+++++|++.|++++..    +..|.||||+|+..|+.+++++|++.|++++..+.. 
T Consensus        50 ~~~~~~~~~g~t~L~~Aa~~g~~~~v~~Ll~~g~~~~~~----~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~-  124 (285)
T 3d9h_A           50 NPLMGDAVSDWSPMHEAAIHGHQLSLRNLISQGWAVNII----TADHVSPLHEACLGGHLSCVKILLKHGAQVNGVTAD-  124 (285)
T ss_dssp             CTTCSSSCCSCCHHHHHHHTTCHHHHHHHHHTTCCSCEE----CTTCCCHHHHHHHTTCHHHHHHHHHTTCCSSCCCTT-
T ss_pred             CcccCCCccCCCHHHHHHHcCCHHHHHHHHHCCCCCCCc----CCCCCCHHHHHHHCCcHHHHHHHHHCCCCCCCCCCC-
Confidence            345678999999999999999999999999999999988    899999999999999999999999999999988877 


Q ss_pred             CCChHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCCCCCcccccccchHHHHHHHHHhhhhhh
Q 028370          106 CGWTPLHTAAKERKKEAVRFLIENGAFLPDDINDSRFNPPLHYCPSLEWAYEEMMRFQRESFS  168 (210)
Q Consensus       106 ~g~tpL~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~~~l~~~~~  168 (210)
                       |.||||+|+..|+.+++++|+++|+++  +. +..|.|||++|+.  .+..+++++|.+...
T Consensus       125 -g~t~L~~A~~~~~~~~v~~Ll~~g~~~--~~-~~~g~t~L~~A~~--~g~~~~v~~Ll~~g~  181 (285)
T 3d9h_A          125 -WHTPLFNACVSGSWDCVNLLLQHGASV--QP-ESDLASPIHEAAR--RGHVECVNSLIAYGG  181 (285)
T ss_dssp             -CCCHHHHHHHHTCHHHHHHHHHTTCCS--SC-SCTTSCHHHHHHH--HTCHHHHHHHHHTTC
T ss_pred             -CCCHHHHHHHcCHHHHHHHHHHCCCCC--CC-CCCCCCHHHHHHH--cCCHHHHHHHHHCCC
Confidence             999999999999999999999999976  43 3459999999994  445788888887643

>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A*

Probab=99.91  E-value=1.6e-23  Score=158.73  Aligned_cols=133  Identities=29%  Similarity=0.466  Sum_probs=114.7

Q ss_pred             hhhcccCCCCChHHHHHHHcCCHHHHHHHHHCCCCccccccCCCCCCCcHHHHHHHCCcHHHHHHHHHcC-CCCCcccCC
Q 028370           26 RSVIDTDDRGWTPLHIGARKGDIKLVKQLLDEGMDVNVAAWGPKSKGVTPLHLAAQGGHLEVMDVLLERG-ADIDARTKG  104 (210)
Q Consensus        26 ~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g-~~~~~~~~~  104 (210)
                      .+++..|..|.||||+|+..|+.+++++|++.|++++..    +..|.||||+|+..|+.+++++|++.| .+++..+..
T Consensus        35 ~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~----~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~  110 (237)
T 3b7b_A           35 ANIDTCSEDQRTPLMEAAENNHLEAVKYLIKAGALVDPK----DAEGSTCLHLAAKKGHYEVVQYLLSNGQMDVNCQDDG  110 (237)
T ss_dssp             CCTTCCCTTCCCHHHHHHHTTCHHHHHHHHTTTCCCCCC----CTTSCCHHHHHHHTTCHHHHHHHHTTTCCCTTCCCTT
T ss_pred             CCcCccCCCCCCHHHHHHHhCCHHHHHHHHhCCCCCCCC----CCCCCcHHHHHHHcCCHHHHHHHHhCCCCCcccCCCC
Confidence            345677888999999999999999999999999988877    888999999999999999999999988 778777766


Q ss_pred             CCCChHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCCCCCcccccccchHHHHHHHHHhhhhhh
Q 028370          105 ACGWTPLHTAAKERKKEAVRFLIENGAFLPDDINDSRFNPPLHYCPSLEWAYEEMMRFQRESFS  168 (210)
Q Consensus       105 ~~g~tpL~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~~~l~~~~~  168 (210)
                        |.||||+|+..|+.+++++|+++|+++  +.++..|.||||+|+..  +..+++++|.+...
T Consensus       111 --g~t~L~~A~~~~~~~~~~~Ll~~g~~~--~~~~~~g~t~L~~A~~~--~~~~~~~~Ll~~g~  168 (237)
T 3b7b_A          111 --GWTPMIWATEYKHVDLVKLLLSKGSDI--NIRDNEENICLHWAAFS--GCVDIAEILLAAKC  168 (237)
T ss_dssp             --SCCHHHHHHHTTCHHHHHHHHHTTCCT--TCCCTTSCCHHHHHHHH--CCHHHHHHHHTTTC
T ss_pred             --CCCHHHHHHHcCCHHHHHHHHHCCCCC--CccCCCCCCHHHHHHHC--CCHHHHHHHHHcCC
Confidence              899999999999999999999999965  88889999999999844  45788888887643

>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} SCOP: d.211.1.0 PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S*

Probab=99.91  E-value=4.6e-24  Score=153.39  Aligned_cols=127  Identities=28%  Similarity=0.420  Sum_probs=112.6

Q ss_pred             cCCCCChHHHHHHHcCCHHHHHHHHHCC-CCccccccCCCCCCCcHHHHHHHCCcHHHHHHHHHcCCCCCcccCCCCCCh
Q 028370           31 TDDRGWTPLHIGARKGDIKLVKQLLDEG-MDVNVAAWGPKSKGVTPLHLAAQGGHLEVMDVLLERGADIDARTKGACGWT  109 (210)
Q Consensus        31 ~d~~g~t~L~~A~~~g~~~~v~~Ll~~g-~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~~g~t  109 (210)
                      .|..|.|+||.|++.|+.++++.|++.+ .+++..    +..|.||||+|+..|+.+++++|++.|++++..+..  |.|
T Consensus         4 ~~~~~~~~l~~A~~~g~~~~v~~ll~~~~~~~~~~----~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~--g~t   77 (165)
T 3twr_A            4 GNSEADRQLLEAAKAGDVETVKKLCTVQSVNCRDI----EGRQSTPLHFAAGYNRVSVVEYLLQHGADVHAKDKG--GLV   77 (165)
T ss_dssp             --CHHHHHHHHHHHHTCHHHHHHHCCTTTTTCCCT----TTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTT--SCC
T ss_pred             CcchhhHHHHHHHHhCCHHHHHHHHHcCCCCcccc----ccCCCCHHHHHHHcChHHHHHHHHhcCCCCCccCCC--CCC
Confidence            5778899999999999999999999854 455555    788999999999999999999999999999988887  999


Q ss_pred             HHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCCCCCcccccccchHHHHHHHHHhhhhh
Q 028370          110 PLHTAAKERKKEAVRFLIENGAFLPDDINDSRFNPPLHYCPSLEWAYEEMMRFQRESF  167 (210)
Q Consensus       110 pL~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~~~l~~~~  167 (210)
                      |||+|+..|+.+++++|+++|+++  +..|..|.||||+|+..+  ..+++++|.+..
T Consensus        78 ~L~~A~~~~~~~~v~~Ll~~g~~~--~~~~~~g~t~L~~A~~~~--~~~~v~~Ll~~g  131 (165)
T 3twr_A           78 PLHNACSYGHYEVAELLVKHGAVV--NVADLWKFTPLHEAAAKG--KYEICKLLLQHG  131 (165)
T ss_dssp             HHHHHHHTTCHHHHHHHHHTTCCT--TCCCTTCCCHHHHHHHTT--CHHHHHHHHHTT
T ss_pred             HHHHHHHcCcHHHHHHHHhCCCCC--CCcCCCCCCHHHHHHHcC--CHHHHHHHHHcC
Confidence            999999999999999999999966  889999999999999544  578888888763

>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A

Probab=99.91  E-value=1e-23  Score=153.67  Aligned_cols=126  Identities=27%  Similarity=0.383  Sum_probs=111.6

Q ss_pred             CCCChHHHHHHHcCCHHHHHHHHHC-CCCccccccCCCCCCCcHHHHHHHCCcHHHHHHHHHcCCCCCcccCCCCCChHH
Q 028370           33 DRGWTPLHIGARKGDIKLVKQLLDE-GMDVNVAAWGPKSKGVTPLHLAAQGGHLEVMDVLLERGADIDARTKGACGWTPL  111 (210)
Q Consensus        33 ~~g~t~L~~A~~~g~~~~v~~Ll~~-g~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~~g~tpL  111 (210)
                      ..+.++||.|+..|+.++++.|++. +.+++..    +..|.||||+|+..|+.+++++|++.|++++..+..  |.|||
T Consensus         3 ~~~~~~l~~A~~~g~~~~v~~ll~~~~~~~~~~----~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~--g~t~L   76 (179)
T 3f6q_A            3 PEFMDDIFTQCREGNAVAVRLWLDNTENDLNQG----DDHGFSPLHWACREGRSAVVEMLIMRGARINVMNRG--DDTPL   76 (179)
T ss_dssp             ----CCHHHHHHHTCHHHHHHHHHCTTSCTTCC----CTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTT--CCCHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHhcCccccccc----CCCCCCHHHHHHHcCcHHHHHHHHHcCCCCCCcCCC--CCCHH
Confidence            4578999999999999999999998 5677777    899999999999999999999999999999998877  99999


Q ss_pred             HHHHhcCCHHHHHHHHHcCCCCCCCCCCCCCCCcccccccchHHHHHHHHHhhhhhh
Q 028370          112 HTAAKERKKEAVRFLIENGAFLPDDINDSRFNPPLHYCPSLEWAYEEMMRFQRESFS  168 (210)
Q Consensus       112 ~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~~~l~~~~~  168 (210)
                      |+|+..|+.+++++|+++|+++  +..|..|.||||+|+..+  ..+++++|.+...
T Consensus        77 ~~A~~~~~~~~v~~Ll~~g~~~--~~~d~~g~t~L~~A~~~~--~~~~v~~Ll~~ga  129 (179)
T 3f6q_A           77 HLAASHGHRDIVQKLLQYKADI--NAVNEHGNVPLHYACFWG--QDQVAEDLVANGA  129 (179)
T ss_dssp             HHHHHTTCHHHHHHHHHTTCCT--TCCCTTSCCHHHHHHHTT--CHHHHHHHHHTTC
T ss_pred             HHHHHcCCHHHHHHHHHcCCCC--CccCCCCCCHHHHHHHcC--CHHHHHHHHHCCC
Confidence            9999999999999999999966  889999999999999554  4788998887643

>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A

Probab=99.90  E-value=8.8e-24  Score=152.89  Aligned_cols=123  Identities=26%  Similarity=0.283  Sum_probs=111.2

Q ss_pred             CChHHHHHHHcCCHHHHHHHHHCCCC-ccccccCCCCCCCcHHHHHHHCCcHHHHHHHHHcCCCCCcccCCCCCChHHHH
Q 028370           35 GWTPLHIGARKGDIKLVKQLLDEGMD-VNVAAWGPKSKGVTPLHLAAQGGHLEVMDVLLERGADIDARTKGACGWTPLHT  113 (210)
Q Consensus        35 g~t~L~~A~~~g~~~~v~~Ll~~g~~-~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~~g~tpL~~  113 (210)
                      +.||||.|+..|+.++++.|++.+.+ ++..    +..|.||||+|+..|+.+++++|++.|++++..+..  |.||||+
T Consensus         2 ~~~~L~~A~~~g~~~~v~~ll~~~~~~~~~~----~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~--g~t~L~~   75 (172)
T 3v30_A            2 DSLSIHQLAAQGELDQLKEHLRKGDNLVNKP----DERGFTPLIWASAFGEIETVRFLLEWGADPHILAKE--RESALSL   75 (172)
T ss_dssp             --CCHHHHHHTTCHHHHHHHHTTCSGGGGCC----CTTSCCHHHHHHHTTCHHHHHHHHHHTCCTTCCCTT--CCCHHHH
T ss_pred             chhhHHHHHHcCCHHHHHHHHHcCcccccCC----CCCCCCHHHHHHHcCCHHHHHHHHHcCCCchhhccc--CCCHHHH
Confidence            46899999999999999999999876 5666    889999999999999999999999999999998877  9999999


Q ss_pred             HHhcCCHHHHHHHHHcCCCCCCCCCCCCCCCcccccccchHHHHHHHHHhhhhh
Q 028370          114 AAKERKKEAVRFLIENGAFLPDDINDSRFNPPLHYCPSLEWAYEEMMRFQRESF  167 (210)
Q Consensus       114 A~~~g~~~~v~~Ll~~g~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~~~l~~~~  167 (210)
                      |+..|+.+++++|+++|+++  +.++..|.||||+|+..  +..+++++|.+..
T Consensus        76 A~~~~~~~~v~~Ll~~g~~~--~~~~~~g~t~L~~A~~~--~~~~~v~~Ll~~g  125 (172)
T 3v30_A           76 ASTGGYTDIVGLLLERDVDI--NIYDWNGGTPLLYAVRG--NHVKCVEALLARG  125 (172)
T ss_dssp             HHHTTCHHHHHHHHTTTCCT--TCCCTTSCCHHHHHHHT--TCHHHHHHHHHTT
T ss_pred             HHHCCCHHHHHHHHHcCCCC--CCCCCCCCCHHHHHHHc--CCHHHHHHHHHcC
Confidence            99999999999999999966  88999999999999954  4578899888764

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1

Probab=99.90  E-value=1.4e-23  Score=172.79  Aligned_cols=128  Identities=33%  Similarity=0.402  Sum_probs=75.9

Q ss_pred             cccCCCCChHHHHHHHcCCHHHHHHHHHCCCCccccccCCCCCCCcHHHHHHHCCcHHHHHHHHHcCCCCCcccCCCCCC
Q 028370           29 IDTDDRGWTPLHIGARKGDIKLVKQLLDEGMDVNVAAWGPKSKGVTPLHLAAQGGHLEVMDVLLERGADIDARTKGACGW  108 (210)
Q Consensus        29 ~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~~g~  108 (210)
                      +..|..|.||||+|+..|+.+++++|+++|++++..    +..|.||||+|+..|+.+++++|+++|++++..+..  |.
T Consensus        41 ~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~----~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~--g~  114 (437)
T 1n11_A           41 NVSNVKVETPLHMAARAGHTEVAKYLLQNKAKVNAK----AKDDQTPLHCAARIGHTNMVKLLLENNANPNLATTA--GH  114 (437)
T ss_dssp             CCSSSCCCCHHHHHHHHTCHHHHHHHHHHTCCSSCC----CTTSCCHHHHHHHHTCHHHHHHHHHHTCCTTCCCTT--CC
T ss_pred             CCCCCCCCCHHHHHHHcCCHHHHHHHHhCCCCCCCC----CCCCCCHHHHHHHCCCHHHHHHHHhCCCCCCCCCCC--CC
Confidence            445555666666666666666666666666666555    555666666666666666666666666666555554  66


Q ss_pred             hHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCCCCCcccccccchHHHHHHHHHhhhh
Q 028370          109 TPLHTAAKERKKEAVRFLIENGAFLPDDINDSRFNPPLHYCPSLEWAYEEMMRFQRES  166 (210)
Q Consensus       109 tpL~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~~~l~~~  166 (210)
                      ||||+|+..|+.+++++|++++++.  ...+..|.|||++|+..+  ..+++++|.+.
T Consensus       115 t~L~~A~~~g~~~~v~~Ll~~~~~~--~~~~~~g~t~L~~A~~~g--~~~~v~~Ll~~  168 (437)
T 1n11_A          115 TPLHIAAREGHVETVLALLEKEASQ--ACMTKKGFTPLHVAAKYG--KVRVAELLLER  168 (437)
T ss_dssp             CHHHHHHHHTCHHHHHHHHHTTCCS--CCCCTTSCCHHHHHHHTT--CHHHHHHHHHT
T ss_pred             cHHHHHHHcCCHHHHHHHHhCCCCC--cCCCCCCCCHHHHHHHcC--CHHHHHHHHhC
Confidence            6666666666666666666666533  455556666666665332  34555555544

>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B

Probab=99.90  E-value=1.2e-23  Score=149.68  Aligned_cols=121  Identities=23%  Similarity=0.334  Sum_probs=110.5

Q ss_pred             CChHHHHHHHcCCHHHHHHHHHC-CCCccccccCCCCCCCcHHHHHHHCCcHHHHHHHHHcCCCCCcccCCCCCChHHHH
Q 028370           35 GWTPLHIGARKGDIKLVKQLLDE-GMDVNVAAWGPKSKGVTPLHLAAQGGHLEVMDVLLERGADIDARTKGACGWTPLHT  113 (210)
Q Consensus        35 g~t~L~~A~~~g~~~~v~~Ll~~-g~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~~g~tpL~~  113 (210)
                      +.|+||.|+..|+.++++.|++. +.+++..    +..|.||||+ +..|+.+++++|++.|++++..+..  |.||||+
T Consensus         2 ~~~~L~~A~~~g~~~~v~~ll~~~~~~~~~~----~~~g~t~L~~-~~~~~~~~v~~Ll~~g~~~~~~~~~--g~t~L~~   74 (156)
T 1bd8_A            2 AGDRLSGAAARGDVQEVRRLLHRELVHPDAL----NRFGKTALQV-MMFGSTAIALELLKQGASPNVQDTS--GTSPVHD   74 (156)
T ss_dssp             HHHHHHHHHHHTCHHHHHHHHHTTCCCTTCC----CTTSCCHHHH-SCTTCHHHHHHHHHTTCCTTCCCTT--SCCHHHH
T ss_pred             cchHHHHHHHhCCHHHHHHHHHhhCcCcccc----CCCCCcHHHH-HHcCCHHHHHHHHHCCCCCCCcCCC--CCCHHHH
Confidence            56999999999999999999998 3477777    8999999999 9999999999999999999998877  9999999


Q ss_pred             HHhcCCHHHHHHHHHcCCCCCCCCCCCCCCCcccccccchHHHHHHHHHhhhh
Q 028370          114 AAKERKKEAVRFLIENGAFLPDDINDSRFNPPLHYCPSLEWAYEEMMRFQRES  166 (210)
Q Consensus       114 A~~~g~~~~v~~Ll~~g~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~~~l~~~  166 (210)
                      |+..|+.+++++|+++|+++  +.+|..|.||||+|+.  .+..+++++|.+.
T Consensus        75 A~~~~~~~~v~~Ll~~g~~~--~~~~~~g~t~L~~A~~--~~~~~~v~~Ll~~  123 (156)
T 1bd8_A           75 AARTGFLDTLKVLVEHGADV--NVPDGTGALPIHLAVQ--EGHTAVVSFLAAE  123 (156)
T ss_dssp             HHHTTCHHHHHHHHHTTCCS--CCCCTTSCCHHHHHHH--HTCHHHHHHHHTT
T ss_pred             HHHcCcHHHHHHHHHcCCCC--CCcCCCCCcHHHHHHH--hChHHHHHHHHhc
Confidence            99999999999999999965  8899999999999994  4458899998877

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1

Probab=99.90  E-value=2.1e-23  Score=171.66  Aligned_cols=131  Identities=33%  Similarity=0.516  Sum_probs=96.6

Q ss_pred             hhcccCCCCChHHHHHHHcCCHHHHHHHHHCCCCccccccCCCCCCCcHHHHHHHCCcHHHHHHHHHcCCCCCcccCCCC
Q 028370           27 SVIDTDDRGWTPLHIGARKGDIKLVKQLLDEGMDVNVAAWGPKSKGVTPLHLAAQGGHLEVMDVLLERGADIDARTKGAC  106 (210)
Q Consensus        27 ~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~~  106 (210)
                      +++.++..|.||||+|+..|+.+++++|+++|++++..    +..|.||||+|+..|+.+++++|+++|++++..+..  
T Consensus       237 ~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~----~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~--  310 (437)
T 1n11_A          237 SANAESVQGVTPLHLAAQEGHAEMVALLLSKQANGNLG----NKSGLTPLHLVAQEGHVPVADVLIKHGVMVDATTRM--  310 (437)
T ss_dssp             CTTCCCTTCCCHHHHHHHTTCHHHHHHHHTTTCCTTCC----CTTCCCHHHHHHHHTCHHHHHHHHHHTCCTTCCCSS--
T ss_pred             CCCCCCCCCCCHHHHHHHCCCHHHHHHHHhcCCCCCCC----CCCCCCHHHHHHHcCCHHHHHHHHhCCccCCCCCCC--
Confidence            34556777777777777777777777777777777766    777777777777777777777777777777776666  


Q ss_pred             CChHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCCCCCcccccccchHHHHHHHHHhhhhh
Q 028370          107 GWTPLHTAAKERKKEAVRFLIENGAFLPDDINDSRFNPPLHYCPSLEWAYEEMMRFQRESF  167 (210)
Q Consensus       107 g~tpL~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~~~l~~~~  167 (210)
                      |.||||+|+..|+.+++++|+++|+++  +.++..|.||||+|+..  +..+++++|.+..
T Consensus       311 g~t~L~~A~~~g~~~~v~~Ll~~gad~--n~~~~~g~t~L~~A~~~--g~~~iv~~Ll~~g  367 (437)
T 1n11_A          311 GYTPLHVASHYGNIKLVKFLLQHQADV--NAKTKLGYSPLHQAAQQ--GHTDIVTLLLKNG  367 (437)
T ss_dssp             CCCHHHHHHHSSCSHHHHHHHHTTCCT--TCCCTTSCCHHHHHHHT--TCHHHHHHHHHTT
T ss_pred             CCCHHHHHHHcCcHHHHHHHHhcCCCC--CCCCCCCCCHHHHHHHC--ChHHHHHHHHHCc
Confidence            777777777777777777777777754  67777777777777743  3467777777653

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus}

Probab=99.90  E-value=6.7e-23  Score=163.32  Aligned_cols=68  Identities=37%  Similarity=0.484  Sum_probs=40.6

Q ss_pred             hhcccCCCCChHHHHHHHcCCHHHHHHHHHCCCCccccccCCCCCCCcHHHHHHHCCcHHHHHHHHHcCCCC
Q 028370           27 SVIDTDDRGWTPLHIGARKGDIKLVKQLLDEGMDVNVAAWGPKSKGVTPLHLAAQGGHLEVMDVLLERGADI   98 (210)
Q Consensus        27 ~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~   98 (210)
                      +++.+|..|.||||+|+..|+.+++++|+++|++++..    +..|.||||+|+..|+.+++++|+++|+++
T Consensus        83 ~~~~~~~~g~t~L~~A~~~g~~~iv~~Ll~~g~~~~~~----~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~  150 (351)
T 3utm_A           83 DVHAKDKGGLVPLHNACSYGHYEVTELLLKHGACVNAM----DLWQFTPLHEAASKNRVEVCSLLLSHGADP  150 (351)
T ss_dssp             CTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCC----CTTCCCHHHHHHHTTCHHHHHHHHHTTCCT
T ss_pred             CCCccCCCCCcHHHHHHHCCCHHHHHHHHHCCCCCCCC----CCCCCCHHHHHHHcCCHHHHHHHHHcCCCC
Confidence            34445566666666666666666666666666666555    555666666666666655555555555443

>1sw6_A Regulatory protein SWI6; transcription regulation, ankyrin repeats, cell-cycle; 2.10A {Saccharomyces cerevisiae} SCOP: d.211.1.1

Probab=99.90  E-value=3e-23  Score=165.18  Aligned_cols=134  Identities=18%  Similarity=0.118  Sum_probs=111.0

Q ss_pred             hhhcc-cCCCCChHHHHHHHcCCHHHHHHHHHCCCCccccccCCCCCCCcHHHHHHHCCc---HHHHHHHHHcC-CCCCc
Q 028370           26 RSVID-TDDRGWTPLHIGARKGDIKLVKQLLDEGMDVNVAAWGPKSKGVTPLHLAAQGGH---LEVMDVLLERG-ADIDA  100 (210)
Q Consensus        26 ~~~~~-~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~g~t~L~~A~~~~~---~~~v~~Ll~~g-~~~~~  100 (210)
                      .+++. +|..|+||||+|+..|+.+++++|+++|++++..    +..|+||||+|+..|+   .++++.|++.+ ++++.
T Consensus       121 ~dvn~~~d~~g~TpLh~Aa~~g~~~~v~~Ll~~Gad~n~~----d~~g~TpLh~A~~~g~~~~~~~~~~ll~~~~~~~~~  196 (327)
T 1sw6_A          121 LNLNIPVDEHGNTPLHWLTSIANLELVKHLVKHGSNRLYG----DNMGESCLVKAVKSVNNYDSGTFEALLDYLYPCLIL  196 (327)
T ss_dssp             CCSCSCCSTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTBC----CTTCCCHHHHHHHSSHHHHTTCHHHHHHHHGGGGGE
T ss_pred             CCcccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCc----CCCCCCHHHHHHHhcccccHHHHHHHHHhhhccccC
Confidence            45666 7999999999999999999999999999999988    8999999999999988   57777777765 66777


Q ss_pred             ccCCCCCChHHHHHHh----cCCHHHHHHHHHcCC--------------------CC-----------------------
Q 028370          101 RTKGACGWTPLHTAAK----ERKKEAVRFLIENGA--------------------FL-----------------------  133 (210)
Q Consensus       101 ~~~~~~g~tpL~~A~~----~g~~~~v~~Ll~~g~--------------------~~-----------------------  133 (210)
                      .+..  |.||||+|+.    .|+.+++++|++.++                    ++                       
T Consensus       197 ~d~~--g~tpLh~A~~~~~~~g~~~~v~~Ll~~~~~~~~~~~~~~i~~~~~~~g~~~~~~~~~g~t~L~~a~~~~~Ll~~  274 (327)
T 1sw6_A          197 EDSM--NRTILHHIIITSGMTGCSAAAKYYLDILMGWIVKKQNRPIQSGTNEKESKPNDKNGERKDSILENLDLKWIIAN  274 (327)
T ss_dssp             ECTT--CCCHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHGGGCCEEEC----------------CHHHHHCSHHHHHHH
T ss_pred             CCCC--CCCHHHHHHHHccccccHHHHHHHHHHHHHHHhcccchHHHhhhhcccCCcccccccCCChhHHHHHHHHHHHh
Confidence            7766  8999999998    888999999887732                    11                       


Q ss_pred             CCCCCCCCCCCcccccccchHHHHHHHHHhhhhh
Q 028370          134 PDDINDSRFNPPLHYCPSLEWAYEEMMRFQRESF  167 (210)
Q Consensus       134 ~~~~~~~~g~t~l~~a~~~~~~~~~~~~~l~~~~  167 (210)
                      +.+.+|..|.||||+|+..  +..+++++|.+..
T Consensus       275 ~~n~~d~~G~TpLh~A~~~--g~~~~v~~Ll~~G  306 (327)
T 1sw6_A          275 MLNAQDSNGDTCLNIAARL--GNISIVDALLDYG  306 (327)
T ss_dssp             TTTCCCTTSCCHHHHHHHH--CCHHHHHHHHHTT
T ss_pred             CCCCCCCCCCCHHHHHHHc--CCHHHHHHHHHcC
Confidence            2478888999999999844  4578888888763

>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A*

Probab=99.90  E-value=8.8e-24  Score=163.78  Aligned_cols=135  Identities=27%  Similarity=0.258  Sum_probs=111.9

Q ss_pred             cCCCCChHHHHHHHc---CCHHHHHHHHHCCCCc-------cccccCCCCCCCcHHHHHHHCCcHHHHHHHHHcCCCCCc
Q 028370           31 TDDRGWTPLHIGARK---GDIKLVKQLLDEGMDV-------NVAAWGPKSKGVTPLHLAAQGGHLEVMDVLLERGADIDA  100 (210)
Q Consensus        31 ~d~~g~t~L~~A~~~---g~~~~v~~Ll~~g~~~-------~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~  100 (210)
                      .|..|.||||+|+..   |+.+++++|++.|+++       +......+..|.||||+|+..|+.+++++|++.|++++.
T Consensus        50 ~~~~g~tpL~~A~~~~~~g~~~~v~~Ll~~ga~~~~~~~~i~~~~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~ga~~~~  129 (273)
T 2pnn_A           50 DPETGKTCLLKAMLNLHNGQNDTIALLLDVARKTDSLKQFVNASYTDSYYKGQTALHIAIERRNMTLVTLLVENGADVQA  129 (273)
T ss_dssp             CTTTCCCHHHHHHHSCBTTBCHHHHHHHHHHHHTTCHHHHHTCCCCSTTTTTCCHHHHHHHTTCHHHHHHHHHTTCCTTC
T ss_pred             cCcCCCCHHHHHHHHHhcCChHHHHHHHHhhccccchhHHhhcccccccCCCCCHHHHHHHcCCHHHHHHHHHCCCCcCc
Confidence            588999999999987   9999999999998653       221111267899999999999999999999999999998


Q ss_pred             ccCC------------CCCChHHHHHHhcCCHHHHHHHHH---cCCCCCCCCCCCCCCCcccccccchHH-------HHH
Q 028370          101 RTKG------------ACGWTPLHTAAKERKKEAVRFLIE---NGAFLPDDINDSRFNPPLHYCPSLEWA-------YEE  158 (210)
Q Consensus       101 ~~~~------------~~g~tpL~~A~~~g~~~~v~~Ll~---~g~~~~~~~~~~~g~t~l~~a~~~~~~-------~~~  158 (210)
                      .+..            ..|.||||+|+..|+.+++++|++   +|+++  +.+|..|.||||+|+..+..       ..+
T Consensus       130 ~~~~~~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~gad~--~~~d~~g~tpLh~A~~~~~~~~~~~~~~~~  207 (273)
T 2pnn_A          130 AANGDFFKKTKGRPGFYFGELPLSLAACTNQLAIVKFLLQNSWQPADI--SARDSVGNTVLHALVEVADNTVDNTKFVTS  207 (273)
T ss_dssp             CBCSGGGSSCSSSCCCCSCBSHHHHHHHTTCHHHHHHHHHCSSCCCCT--TCCCTTSCCHHHHHHHHCCSCHHHHHHHHH
T ss_pred             cccccccccccccccccCCCCHHHHHHHcCCHHHHHHHHhcccCCCCc--eeeCCCCCcHHHHHHHccCcchhHHHHHHH
Confidence            8761            129999999999999999999999   89965  89999999999999854321       146


Q ss_pred             HHHHhhhhh
Q 028370          159 MMRFQRESF  167 (210)
Q Consensus       159 ~~~~l~~~~  167 (210)
                      ++++|.+..
T Consensus       208 ~v~~Ll~~g  216 (273)
T 2pnn_A          208 MYNEILILG  216 (273)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHhh
Confidence            677777653

>2l6b_A NR1C; ankyrin, consensus, repeat protein, ising model, DE NOV; NMR {Escherichia coli}

Probab=99.90  E-value=4.5e-24  Score=144.60  Aligned_cols=109  Identities=41%  Similarity=0.587  Sum_probs=100.6

Q ss_pred             ccCCCCChHHHHHHHcCCHHHHHHHHHCCCCccccccCCCCCCCcHHHHHHHCCcHHHHHHHHHcCCCCCcccCCCCCCh
Q 028370           30 DTDDRGWTPLHIGARKGDIKLVKQLLDEGMDVNVAAWGPKSKGVTPLHLAAQGGHLEVMDVLLERGADIDARTKGACGWT  109 (210)
Q Consensus        30 ~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~~g~t  109 (210)
                      .+|..|.||||+|+..|+.+++++|++.|++++..    +..|.||||+|+..++.+++++|++.|++++..+..  |.|
T Consensus         4 ~~d~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~----d~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~d~~--g~t   77 (115)
T 2l6b_A            4 WGSKDGNTPLHNAAKNGHAEEVKKLLSKGADVNAR----SKDGNTPLHLAAKNGHAEIVKLLLAKGADVNARSKD--GNT   77 (115)
T ss_dssp             CCSCSSCCHHHHHHHHTCHHHHHHHTTTTCCSSCC----CSSSCCTTHHHHTTTCHHHHHHHTTTTCCTTCCCTT--CCC
T ss_pred             ccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCc----CCCCCCHHHHHHHcCcHHHHHHHHHcCCCCcccCCC--CCC
Confidence            58999999999999999999999999999999988    899999999999999999999999999999988877  999


Q ss_pred             HHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCCCCCcc
Q 028370          110 PLHTAAKERKKEAVRFLIENGAFLPDDINDSRFNPPL  146 (210)
Q Consensus       110 pL~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~g~t~l  146 (210)
                      |||+|+..|+.+++++|+++|+++  +.++..|.+|-
T Consensus        78 pl~~A~~~~~~~~~~~Ll~~ga~~--n~~~~~~~~~~  112 (115)
T 2l6b_A           78 PEHLAKKNGHHEIVKLLDAKGADV--NARSWGSSHHH  112 (115)
T ss_dssp             TTHHHHTTTCHHHHHHHHTTSSSH--HHHSCCCC---
T ss_pred             HHHHHHHCCCHHHHHHHHHcCCCC--CcCCccccccc
Confidence            999999999999999999999966  77888888774

>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1

Probab=99.90  E-value=5e-23  Score=161.18  Aligned_cols=125  Identities=29%  Similarity=0.458  Sum_probs=113.5

Q ss_pred             CCCCChHHHHHHHcCCHHHHHHHHHCCCCccccccCCCCCCCcHHHHHHHCCcHHHHHHHHHcCCCCCcccCCCCCChHH
Q 028370           32 DDRGWTPLHIGARKGDIKLVKQLLDEGMDVNVAAWGPKSKGVTPLHLAAQGGHLEVMDVLLERGADIDARTKGACGWTPL  111 (210)
Q Consensus        32 d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~~g~tpL  111 (210)
                      +..|.||||.|+..|+.+++++|++.|++++..    +..|.||||+|+..|+.+++++|++.|++++..+..  |.|||
T Consensus        37 ~~~~~t~l~~A~~~g~~~~v~~Ll~~g~~~~~~----~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~--g~tpL  110 (299)
T 1s70_B           37 KFDDGAVFLAACSSGDTEEVLRLLERGADINYA----NVDGLTALHQACIDDNVDMVKFLVENGANINQPDNE--GWIPL  110 (299)
T ss_dssp             EECHHHHHHHHHHHTCHHHHHHHHHHCCCTTCB----CTTCCBHHHHHHHTTCHHHHHHHHHTTCCTTCCCTT--SCCHH
T ss_pred             ccCCccHHHHHHHcCCHHHHHHHHHcCCCCccc----CCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCCCCC--CCcHH
Confidence            346789999999999999999999999999988    899999999999999999999999999999988877  99999


Q ss_pred             HHHHhcCCHHHHHHHHHcCCCCCCCCCCCCCCCcccccccchHHHHHHHHHhhhh
Q 028370          112 HTAAKERKKEAVRFLIENGAFLPDDINDSRFNPPLHYCPSLEWAYEEMMRFQRES  166 (210)
Q Consensus       112 ~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~~~l~~~  166 (210)
                      |+|+..|+.+++++|+++|+++  +..+..|.|||++|+.  .+..++++.+...
T Consensus       111 ~~A~~~g~~~~v~~Ll~~g~~~--~~~~~~g~t~l~~A~~--~~~~~~~~~ll~~  161 (299)
T 1s70_B          111 HAAASCGYLDIAEYLISQGAHV--GAVNSEGDTPLDIAEE--EAMEELLQNEVNR  161 (299)
T ss_dssp             HHHHHHTCHHHHHHHHHTTCCT--TCCCTTSCCHHHHCCS--HHHHHHHHHHHHH
T ss_pred             HHHHHcCCHHHHHHHHhCCCCC--CCcCCCCCCHHHHHHh--cchHHHHHHHHhh
Confidence            9999999999999999999965  8899999999999984  4556777666544

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major}

Probab=99.90  E-value=3.7e-23  Score=166.47  Aligned_cols=138  Identities=26%  Similarity=0.276  Sum_probs=110.7

Q ss_pred             hhhcccCCCCChHHHHHHHcCCHHHHHHHHHCCCCcccccc---------------------------------------
Q 028370           26 RSVIDTDDRGWTPLHIGARKGDIKLVKQLLDEGMDVNVAAW---------------------------------------   66 (210)
Q Consensus        26 ~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~---------------------------------------   66 (210)
                      .+++.+|..|.||||+|+..|+.+++++|++.|++++....                                       
T Consensus        44 ~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~  123 (364)
T 3ljn_A           44 VSPTIQNRFGCTALHLACKFGCVDTAKYLASVGEVHSLWHGQKPIHLAVMANKTDLVVALVEGAKERGQMPESLLNECDE  123 (364)
T ss_dssp             CCTTCCCTTCCCHHHHHHHHCCHHHHHHHHHHCCCCCCBTTBCHHHHHHHTTCHHHHHHHHHHHHHHTCCHHHHHTCCCC
T ss_pred             CCccccCCCCCcHHHHHHHcCCHHHHHHHHHCCCCccccCCCCHHHHHHHcCCHHHHHHHHHhccccCCCHHHHHhhcch
Confidence            34566777788888888888888888888777765543100                                       


Q ss_pred             ---------CCCCCCCcHHHHHHHCC--cHHHHHHHHHcCCCCCcccCCCCCChHHHHHHhcCCHHHHHHHHHcCCC---
Q 028370           67 ---------GPKSKGVTPLHLAAQGG--HLEVMDVLLERGADIDARTKGACGWTPLHTAAKERKKEAVRFLIENGAF---  132 (210)
Q Consensus        67 ---------~~~~~g~t~L~~A~~~~--~~~~v~~Ll~~g~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~g~~---  132 (210)
                               ..+..|.||||+|+..|  +.+++++|++.|++++..+..  |.||||+|+..|+.+++++|+++|++   
T Consensus       124 ~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~~~v~~Ll~~ga~~~~~d~~--g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~  201 (364)
T 3ljn_A          124 REVNEIGSHVKHCKGQTALHWCVGLGPEYLEMIKILVQLGASPTAKDKA--DETPLMRAMEFRNREALDLMMDTVPSKSS  201 (364)
T ss_dssp             CCEEEETTEEEEESCCCHHHHHHHSCGGGHHHHHHHHHHTCCTTCCCTT--SCCHHHHHHHTTCHHHHHHHHHHCSCSSS
T ss_pred             HhhhhhccccCCCCCCCHHHHHHHcCCchHHHHHHHHHcCCCCcccCCC--CCCHHHHHHHcCCHHHHHHHHhccccccc
Confidence                     01567899999999999  999999999999999988877  99999999999999999999999986   


Q ss_pred             CCCCCCCCCCCCcccccccchHHHHHHHHHhhhhh
Q 028370          133 LPDDINDSRFNPPLHYCPSLEWAYEEMMRFQRESF  167 (210)
Q Consensus       133 ~~~~~~~~~g~t~l~~a~~~~~~~~~~~~~l~~~~  167 (210)
                      ++.+..+..|.||||+|+..  +..+++++|.+..
T Consensus       202 ~~~~~~~~~g~t~L~~A~~~--g~~~~v~~Ll~~g  234 (364)
T 3ljn_A          202 LRLDYANKQGNSHLHWAILI--NWEDVAMRFVEMG  234 (364)
T ss_dssp             CCTTCCCTTCCCTTHHHHTT--TCHHHHHHHHTTT
T ss_pred             ccccccCCCCCcHHHHHHHc--CCHHHHHHHHHcC
Confidence            01388899999999999954  4578999888764

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1

Probab=99.90  E-value=7.6e-23  Score=158.40  Aligned_cols=130  Identities=28%  Similarity=0.433  Sum_probs=105.1

Q ss_pred             hhccc-CCCCChHHHHHHHcCCHHHHHHHHHCCCCccccccCCCCCCCcHHHHHHHCCcHHHHHHHHHcCCCCCcccCCC
Q 028370           27 SVIDT-DDRGWTPLHIGARKGDIKLVKQLLDEGMDVNVAAWGPKSKGVTPLHLAAQGGHLEVMDVLLERGADIDARTKGA  105 (210)
Q Consensus        27 ~~~~~-d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~  105 (210)
                      +++.+ +..|.||||+|+..|+.+++++|+++|++++..    +..|.||||+|+..|+.+++++|++.|++++..+.. 
T Consensus        30 ~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~----~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~-  104 (285)
T 1wdy_A           30 NVNFQEEEGGWTPLHNAVQMSREDIVELLLRHGADPVLR----KKNGATPFLLAAIAGSVKLLKLFLSKGADVNECDFY-  104 (285)
T ss_dssp             CTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCC----CTTCCCHHHHHHHHTCHHHHHHHHHTTCCTTCBCTT-
T ss_pred             CcccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCccc----CCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCccCcc-
Confidence            34444 677888888888888888888888888888877    788888888888888888888888888888877766 


Q ss_pred             CCChHHHHHHhcCCHHHHHHHHHcCCCCCCCCC----------CCCCCCcccccccchHHHHHHHHHhhhh
Q 028370          106 CGWTPLHTAAKERKKEAVRFLIENGAFLPDDIN----------DSRFNPPLHYCPSLEWAYEEMMRFQRES  166 (210)
Q Consensus       106 ~g~tpL~~A~~~g~~~~v~~Ll~~g~~~~~~~~----------~~~g~t~l~~a~~~~~~~~~~~~~l~~~  166 (210)
                       |.||||+|+..|+.+++++|+++|+++  +..          +..|.|||++|+.  .+..++++++.+.
T Consensus       105 -g~t~L~~A~~~~~~~~~~~Ll~~g~~~--~~~~~~~~~~~~~~~~g~t~L~~A~~--~~~~~~v~~Ll~~  170 (285)
T 1wdy_A          105 -GFTAFMEAAVYGKVKALKFLYKRGANV--NLRRKTKEDQERLRKGGATALMDAAE--KGHVEVLKILLDE  170 (285)
T ss_dssp             -CCBHHHHHHHTTCHHHHHHHHHTTCCT--TCCCCCCHHHHHTTCCCCCHHHHHHH--HTCHHHHHHHHHT
T ss_pred             -cCCHHHHHHHhCCHHHHHHHHHhCCCc--ccccccHHHHHhhccCCCcHHHHHHH--cCCHHHHHHHHHh
Confidence             888888888888888888888888865  444          6778888888884  3446777777765

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1

Probab=99.89  E-value=1.2e-22  Score=157.36  Aligned_cols=126  Identities=29%  Similarity=0.360  Sum_probs=108.2

Q ss_pred             CCCCChHHHHHHHcCCHHHHHHHHHC-CCCccccccCCCCCCCcHHHHHHHCCc----HHHHHHHHHcCCCCCcccCCCC
Q 028370           32 DDRGWTPLHIGARKGDIKLVKQLLDE-GMDVNVAAWGPKSKGVTPLHLAAQGGH----LEVMDVLLERGADIDARTKGAC  106 (210)
Q Consensus        32 d~~g~t~L~~A~~~g~~~~v~~Ll~~-g~~~~~~~~~~~~~g~t~L~~A~~~~~----~~~v~~Ll~~g~~~~~~~~~~~  106 (210)
                      +..|.||||+|+..|+.+++++|++. |++++..    +..|.||||+|+..++    .+++++|++.|++++..+..  
T Consensus       145 ~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~----~~~g~t~l~~a~~~~~~~~~~~i~~~Ll~~g~~~~~~~~~--  218 (285)
T 1wdy_A          145 RKGGATALMDAAEKGHVEVLKILLDEMGADVNAC----DNMGRNALIHALLSSDDSDVEAITHLLLDHGADVNVRGER--  218 (285)
T ss_dssp             TCCCCCHHHHHHHHTCHHHHHHHHHTSCCCTTCC----CTTSCCHHHHHHHCSCTTTHHHHHHHHHHTTCCSSCCCTT--
T ss_pred             ccCCCcHHHHHHHcCCHHHHHHHHHhcCCCCCcc----CCCCCCHHHHHHHccccchHHHHHHHHHHcCCCCCCcCCC--
Confidence            67788999999999999999999987 8888877    8889999999999888    88999999999998888777  


Q ss_pred             CChHHHHHHhcCCHHHHHHHHH-cCCCCCCCCCCCCCCCcccccccchHHHHHHHHHhhhhh
Q 028370          107 GWTPLHTAAKERKKEAVRFLIE-NGAFLPDDINDSRFNPPLHYCPSLEWAYEEMMRFQRESF  167 (210)
Q Consensus       107 g~tpL~~A~~~g~~~~v~~Ll~-~g~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~~~l~~~~  167 (210)
                      |.||||+|+..|+.+++++|++ .|+++  +.+|..|.|||++|+..  +..+++++|.+..
T Consensus       219 g~t~L~~A~~~~~~~~v~~Ll~~~g~~~--~~~~~~g~t~l~~A~~~--~~~~i~~~Ll~~G  276 (285)
T 1wdy_A          219 GKTPLILAVEKKHLGLVQRLLEQEHIEI--NDTDSDGKTALLLAVEL--KLKKIAELLCKRG  276 (285)
T ss_dssp             SCCHHHHHHHTTCHHHHHHHHHSSSCCT--TCCCTTSCCHHHHHHHT--TCHHHHHHHHHHS
T ss_pred             CCcHHHHHHHcCCHHHHHHHHhccCCCc--cccCCCCCcHHHHHHHc--CcHHHHHHHHHcC
Confidence            8899999999999999999998 78855  88888999999999854  4578888887764

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1

Probab=99.89  E-value=4.3e-23  Score=167.03  Aligned_cols=132  Identities=26%  Similarity=0.353  Sum_probs=63.2

Q ss_pred             hcccCCCCChHHHHHHHcC---CHHHHHHHHHCCCCccccc----cCCCCCCCcHHHHHHHCCcHHHHHHHHHcC-CCCC
Q 028370           28 VIDTDDRGWTPLHIGARKG---DIKLVKQLLDEGMDVNVAA----WGPKSKGVTPLHLAAQGGHLEVMDVLLERG-ADID   99 (210)
Q Consensus        28 ~~~~d~~g~t~L~~A~~~g---~~~~v~~Ll~~g~~~~~~~----~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g-~~~~   99 (210)
                      ++.+|..|.||||+|+..+   +.+++++|+++|++++...    ...+..|.||||+|+..|+.+++++|++.+ ++++
T Consensus       228 ~~~~d~~g~t~L~~A~~~~~~~~~~~v~~Ll~~g~~~~~~~~~~~~~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~n  307 (373)
T 2fo1_E          228 IEELDRNGMTALMIVAHNEGRDQVASAKLLVEKGAKVDYDGAARKDSEKYKGRTALHYAAQVSNMPIVKYLVGEKGSNKD  307 (373)
T ss_dssp             TSCCCTTSCCHHHHHHHSCSTTHHHHHHHHHHHTCCSSCCSGGGTSSSSCCCCCTHHHHHSSCCHHHHHHHHHHSCCCTT
T ss_pred             hhhcCCCCCCHHHHHHHhCCcchHHHHHHHHHCCCCcccccccccCcccccCCCHHHHHHHhCCHHHHHHHHHhcCCCcc
Confidence            3444455555555555544   4555555555555444310    001334555555555555555555555443 4555


Q ss_pred             cccCCCCCChHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCCCCCcccccccchHHHHHHHHHhhh
Q 028370          100 ARTKGACGWTPLHTAAKERKKEAVRFLIENGAFLPDDINDSRFNPPLHYCPSLEWAYEEMMRFQRE  165 (210)
Q Consensus       100 ~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~~~l~~  165 (210)
                      ..+..  |.||||+|+..|+.+++++|+++|+++  +.+|..|.|||++|+..  +..+++++|.+
T Consensus       308 ~~d~~--g~TpL~~A~~~g~~~iv~~Ll~~gad~--~~~d~~g~t~l~~A~~~--g~~~iv~~Ll~  367 (373)
T 2fo1_E          308 KQDED--GKTPIMLAAQEGRIEVVMYLIQQGASV--EAVDATDHTARQLAQAN--NHHNIVDIFDR  367 (373)
T ss_dssp             CCCTT--CCCHHHHHHHHTCHHHHHHHHHTTCCS--SCCCSSSCCHHHHHHHT--TCHHHHHHHHT
T ss_pred             CcCCC--CCCHHHHHHHcCCHHHHHHHHHcCCCc--cCCCCCCCCHHHHHHHc--CCHHHHHHHHh
Confidence            44444  555555555555555555555555533  44555555555555422  23444444443

>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase, cyclin dependent kinase inhibitory protein, CDK, cell cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A 1dc2_A 2a5e_A

Probab=99.89  E-value=1.2e-23  Score=150.01  Aligned_cols=115  Identities=23%  Similarity=0.294  Sum_probs=92.8

Q ss_pred             hhhcccCCCCChHHHHHHHcCCHHHHHHHHHCCCCccccccCCCCCCCc-HHHHHHHCCcHHHHHHHHHcCCCCCcccCC
Q 028370           26 RSVIDTDDRGWTPLHIGARKGDIKLVKQLLDEGMDVNVAAWGPKSKGVT-PLHLAAQGGHLEVMDVLLERGADIDARTKG  104 (210)
Q Consensus        26 ~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~g~t-~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~  104 (210)
                      .+++.+|..|+||||+|+ .|+.+++++|+++|++++..    +..|.| |||+|+..|+.+++++|+++|++++..+..
T Consensus        36 ~~~~~~~~~g~t~L~~A~-~~~~~~v~~Ll~~g~~~~~~----d~~g~ttpL~~A~~~~~~~~v~~Ll~~ga~~~~~d~~  110 (156)
T 1bi7_B           36 ANPNAPNSYGRRPIQVMM-MGSARVAELLLLHGAEPNCA----DPATLTRPVHDAAREGFLDTLVVLHRAGARLDVRDAW  110 (156)
T ss_dssp             CCTTCCCSSSCCTTTSSC-TTCHHHHHHHHTTTCCCCCC----CTTTCCCHHHHHHHHTCHHHHHHHHHHTCCSSCCCTT
T ss_pred             CCCCCCCCCCCCHHHHHH-cCCHHHHHHHHHcCCCCCCc----CCCCCcHHHHHHHHCCCHHHHHHHHHcCCCCcccCCC
Confidence            456778999999999986 89999999999999999988    899999 999999999999999999999999998877


Q ss_pred             CCCChHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCCCCCccccc
Q 028370          105 ACGWTPLHTAAKERKKEAVRFLIENGAFLPDDINDSRFNPPLHYC  149 (210)
Q Consensus       105 ~~g~tpL~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~g~t~l~~a  149 (210)
                        |.||||+|+..|+.+++++|+++|+++  +.++..|.||.+-+
T Consensus       111 --g~tpl~~A~~~~~~~~v~~Ll~~ga~~--~~~~~~g~t~~~~~  151 (156)
T 1bi7_B          111 --GRLPVDLAEELGHRDVARYLRAAAGGT--RGSNHARIDAAEGP  151 (156)
T ss_dssp             --CCCHHHHHHHHTCHHHHHHHSSCC-------------------
T ss_pred             --CCCHHHHHHHhCHHHHHHHHHHcCCCC--CccCcCcCcccccC
Confidence              999999999999999999999999965  88999999998754

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus}

Probab=99.89  E-value=2.8e-22  Score=159.75  Aligned_cols=119  Identities=32%  Similarity=0.496  Sum_probs=111.1

Q ss_pred             hhhhcccCCCCChHHHHHHHcCCHHHHHHHHHCCCCccccccCCCCCCCcHHHHHHHCCcHHHHHHHHHcCCCCCcccCC
Q 028370           25 FRSVIDTDDRGWTPLHIGARKGDIKLVKQLLDEGMDVNVAAWGPKSKGVTPLHLAAQGGHLEVMDVLLERGADIDARTKG  104 (210)
Q Consensus        25 ~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~  104 (210)
                      ..+++.+|..|.||||+|+..|+.+++++|+++|++++..    +..|.||||+|+..|+.+++++|+++|++++..+..
T Consensus        48 ~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~----~~~g~t~L~~A~~~g~~~iv~~Ll~~g~~~~~~~~~  123 (351)
T 3utm_A           48 NVNCHASDGRKSTPLHLAAGYNRVRIVQLLLQHGADVHAK----DKGGLVPLHNACSYGHYEVTELLLKHGACVNAMDLW  123 (351)
T ss_dssp             TTTCCCSSTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCC----CTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTT
T ss_pred             CCCcccCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCcc----CCCCCcHHHHHHHCCCHHHHHHHHHCCCCCCCCCCC
Confidence            4456678999999999999999999999999999999988    899999999999999999999999999999988877


Q ss_pred             CCCChHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCCCCCccccccc
Q 028370          105 ACGWTPLHTAAKERKKEAVRFLIENGAFLPDDINDSRFNPPLHYCPS  151 (210)
Q Consensus       105 ~~g~tpL~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~g~t~l~~a~~  151 (210)
                        |.||||+|+..|+.+++++|+++|+++  +..+..|.||+++|+.
T Consensus       124 --g~t~L~~A~~~~~~~~v~~Ll~~g~~~--~~~~~~g~~~l~~a~~  166 (351)
T 3utm_A          124 --QFTPLHEAASKNRVEVCSLLLSHGADP--TLVNCHGKSAVDMAPT  166 (351)
T ss_dssp             --CCCHHHHHHHTTCHHHHHHHHHTTCCT--TCCCTTSCCHHHHCSS
T ss_pred             --CCCHHHHHHHcCCHHHHHHHHHcCCCC--ccccCCCCcchHHHhh
Confidence              999999999999999999999999965  8899999999999984

>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A 4dx1_A 4dx2_A*

Probab=99.89  E-value=2.9e-23  Score=159.64  Aligned_cols=135  Identities=27%  Similarity=0.274  Sum_probs=109.8

Q ss_pred             CCCCChHHHHHH---HcCCHHHHHHHHHCCCCccc-------cccCCCCCCCcHHHHHHHCCcHHHHHHHHHcCCCCCcc
Q 028370           32 DDRGWTPLHIGA---RKGDIKLVKQLLDEGMDVNV-------AAWGPKSKGVTPLHLAAQGGHLEVMDVLLERGADIDAR  101 (210)
Q Consensus        32 d~~g~t~L~~A~---~~g~~~~v~~Ll~~g~~~~~-------~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~  101 (210)
                      |..|.||||+|+   +.|+.+++++|++.|+++..       .....+..|+||||+|+..|+.+++++|++.|++++..
T Consensus        43 ~~~g~t~L~~A~~~~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~  122 (260)
T 3jxi_A           43 PSTGKTCLPKALLNLSAGRNDTIPILLDIAEKTGNMREFINSPFRDVYYRGQTALHIAIERRCKHYVELLVEKGADVHAQ  122 (260)
T ss_dssp             TTTCCCHHHHHHTSCBTTBCTHHHHHHHHHHHTTCHHHHHTCCBCCSSEESBCHHHHHHHTTCHHHHHHHHHTTCCTTCC
T ss_pred             cCCCCcHHHHHHHHhhcCCHHHHHHHHHhcccccchHhhhcccccccccCCCCHHHHHHHcCCHHHHHHHHhCCCCcCcc
Confidence            377999999999   77999999999998754221       11111558999999999999999999999999999988


Q ss_pred             cCC------------CCCChHHHHHHhcCCHHHHHHHHH---cCCCCCCCCCCCCCCCcccccccchHH-------HHHH
Q 028370          102 TKG------------ACGWTPLHTAAKERKKEAVRFLIE---NGAFLPDDINDSRFNPPLHYCPSLEWA-------YEEM  159 (210)
Q Consensus       102 ~~~------------~~g~tpL~~A~~~g~~~~v~~Ll~---~g~~~~~~~~~~~g~t~l~~a~~~~~~-------~~~~  159 (210)
                      +..            ..|.||||+|+..|+.+++++|++   .|+++  +.+|..|.||||+|+..+..       ..++
T Consensus       123 ~~~~~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~ga~~--~~~d~~g~TpLh~A~~~~~~~~~~~~~~~~~  200 (260)
T 3jxi_A          123 ARGRFFQPKDEGGYFYFGELPLSLAACTNQPHIVHYLTENGHKQADL--RRQDSRGNTVLHALVAIADNTRENTKFVTKM  200 (260)
T ss_dssp             CEECCCSSSCCCCSCCSCSSHHHHHHHTTCHHHHHHHHHCSSCCCCT--TCCCTTSCCHHHHHHHHCCSSHHHHHHHHHH
T ss_pred             ccccccCcccccccccCCCCHHHHHHHcCCHHHHHHHHhccccCCCC--cccCCCCCcHHHHHHHhccCchhHHHHHHHH
Confidence            731            229999999999999999999999   88965  89999999999999943321       1467


Q ss_pred             HHHhhhhhh
Q 028370          160 MRFQRESFS  168 (210)
Q Consensus       160 ~~~l~~~~~  168 (210)
                      +++|.+...
T Consensus       201 v~~Ll~~ga  209 (260)
T 3jxi_A          201 YDLLLIKCA  209 (260)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHhCc
Confidence            777776643

>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}

Probab=99.89  E-value=3e-23  Score=162.14  Aligned_cols=129  Identities=16%  Similarity=0.125  Sum_probs=74.2

Q ss_pred             hhcccCCCCChHHHHHHHcCCHHHHHHHHHCCCCccccccCCCCCC-CcHHHHHHHCCcHHHHHHHHHcCCCCCcccCCC
Q 028370           27 SVIDTDDRGWTPLHIGARKGDIKLVKQLLDEGMDVNVAAWGPKSKG-VTPLHLAAQGGHLEVMDVLLERGADIDARTKGA  105 (210)
Q Consensus        27 ~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~g-~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~  105 (210)
                      +++.+|..|+||||+|+..|+.+++++|+++|++++..    +..| .||||+|+..|+.+++++|++.|+++... .. 
T Consensus        87 ~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~----~~~g~~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~-~~-  160 (285)
T 3kea_A           87 DDSQFDDKGNTALYYAVDSGNMQTVKLFVKKNWRLMFY----GKTGWKTSFYHAVMLNDVSIVSYFLSEIPSTFDL-AI-  160 (285)
T ss_dssp             CTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHCGGGGGC----SSSGGGSHHHHHHHTTCHHHHHHHHTTSCTTCCC-ST-
T ss_pred             CCCCcCCCCCcHHHHHHHcCCHHHHHHHHhcCCCCCcc----CCCCCCCHHHHHHHcCCHHHHHHHHhCCCccccc-cC-
Confidence            34445555566666666666666666666555555554    5555 46666666666666666666555544211 12 


Q ss_pred             CCChHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCCCCCc-ccccccchHHHHHHHHHhhhh
Q 028370          106 CGWTPLHTAAKERKKEAVRFLIENGAFLPDDINDSRFNPP-LHYCPSLEWAYEEMMRFQRES  166 (210)
Q Consensus       106 ~g~tpL~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~g~t~-l~~a~~~~~~~~~~~~~l~~~  166 (210)
                       |.||||+|+..|+.+++++|+++|+++  +.++..|.|| ||+|+.  .+..+++++|.+.
T Consensus       161 -g~t~L~~A~~~g~~~~v~~Ll~~gad~--n~~~~~g~t~~L~~A~~--~~~~~~v~~Ll~~  217 (285)
T 3kea_A          161 -LLSCIHITIKNGHVDMMILLLDYMTST--NTNNSLLFIPDIKLAID--NKDIEMLQALFKY  217 (285)
T ss_dssp             -HHHHHHHHHHTTCHHHHHHHHHHHHHT--CTTCCCBCCTTHHHHHH--HTCHHHHHHHTTS
T ss_pred             -CccHHHHHHHcChHHHHHHHHHcCCCC--CcccCCCCChHHHHHHH--cCCHHHHHHHHHc
Confidence             566666666666666666666666644  5666666665 666663  3335666666554

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1

Probab=99.89  E-value=8.1e-23  Score=165.40  Aligned_cols=135  Identities=22%  Similarity=0.297  Sum_probs=105.2

Q ss_pred             hhhhcccCCCCChHHHHHHHcCCHHHHHHHHHCCCCccccccCCCCCCCcHHHHHHHCCcHHHHHHHHHcC---CCCCcc
Q 028370           25 FRSVIDTDDRGWTPLHIGARKGDIKLVKQLLDEGMDVNVAAWGPKSKGVTPLHLAAQGGHLEVMDVLLERG---ADIDAR  101 (210)
Q Consensus        25 ~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g---~~~~~~  101 (210)
                      ..+++.+|..|.||||+|+..|+.+++++|+++|++++..    +..|.||||+|+..|+.+++++|++.+   ++++..
T Consensus       156 ga~vn~~d~~g~TpL~~A~~~g~~~iv~~Ll~~ga~~~~~----~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~  231 (373)
T 2fo1_E          156 GADVNAMDCDENTPLMLAVLARRRRLVAYLMKAGADPTIY----NKSERSALHQAAANRDFGMMVYMLNSTKLKGDIEEL  231 (373)
T ss_dssp             CCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCSCCC----CTTCCCHHHHHHHTTCHHHHHHHTTSHHHHHTTSCC
T ss_pred             CCCCcCCCCCCCCHHHHHHHcChHHHHHHHHHCCCCCccc----CCCCCCHHHHHHHCCCHHHHHHHHhcCccccChhhc
Confidence            4456778899999999999999999999999999998877    788888888888888888888888776   677776


Q ss_pred             cCCCCCChHHHHHHhcC---CHHHHHHHHHcCCCCCC------CCCCCCCCCcccccccchHHHHHHHHHhhhhh
Q 028370          102 TKGACGWTPLHTAAKER---KKEAVRFLIENGAFLPD------DINDSRFNPPLHYCPSLEWAYEEMMRFQRESF  167 (210)
Q Consensus       102 ~~~~~g~tpL~~A~~~g---~~~~v~~Ll~~g~~~~~------~~~~~~g~t~l~~a~~~~~~~~~~~~~l~~~~  167 (210)
                      +..  |.||||+|+..+   +.+++++|+++|++++.      ...+..|.||||+|+..+  ..+++++|.+..
T Consensus       232 d~~--g~t~L~~A~~~~~~~~~~~v~~Ll~~g~~~~~~~~~~~~~~d~~g~t~Lh~A~~~g--~~~~v~~Ll~~~  302 (373)
T 2fo1_E          232 DRN--GMTALMIVAHNEGRDQVASAKLLVEKGAKVDYDGAARKDSEKYKGRTALHYAAQVS--NMPIVKYLVGEK  302 (373)
T ss_dssp             CTT--SCCHHHHHHHSCSTTHHHHHHHHHHHTCCSSCCSGGGTSSSSCCCCCTHHHHHSSC--CHHHHHHHHHHS
T ss_pred             CCC--CCCHHHHHHHhCCcchHHHHHHHHHCCCCcccccccccCcccccCCCHHHHHHHhC--CHHHHHHHHHhc
Confidence            666  788888888776   77888888888876531      125667788888887543  367777777654

>1dcq_A PYK2-associated protein beta; zinc-binding module, ankyrin repeats, metal binding protein; 2.10A {Mus musculus} SCOP: d.211.1.1 g.45.1.1

Probab=99.88  E-value=7e-23  Score=159.60  Aligned_cols=128  Identities=23%  Similarity=0.320  Sum_probs=112.9

Q ss_pred             CChHHHHHHHcCCHHHHHHHHHCCCCcccc--ccCCCCCCCcHHHHHHHC---CcHHHHHHHHHcCCCCCcccCCCCCCh
Q 028370           35 GWTPLHIGARKGDIKLVKQLLDEGMDVNVA--AWGPKSKGVTPLHLAAQG---GHLEVMDVLLERGADIDARTKGACGWT  109 (210)
Q Consensus        35 g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~--~~~~~~~g~t~L~~A~~~---~~~~~v~~Ll~~g~~~~~~~~~~~g~t  109 (210)
                      ..++|+.|+..|+.+.+..+++.|++++..  ....+..|.||||+|+..   ++.+++++|+++|++++.++..  |.|
T Consensus       130 ~l~~l~~a~~~~d~~~~~~ll~~g~~~~~~~~l~~~~~~g~t~Lh~A~~~~~~~~~~~v~~Ll~~ga~in~~d~~--g~T  207 (278)
T 1dcq_A          130 KLHSLCEAVKTRDIFGLLQAYADGVDLTEKIPLANGHEPDETALHLAVRSVDRTSLHIVDFLVQNSGNLDKQTGK--GST  207 (278)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHTTCCTTSBCCCSSCSSTTCBHHHHHHHHCCTTTHHHHHHHHHHCSCTTCCCTT--CCC
T ss_pred             hhhhhhhHhhhcccHHHHHHHHhhcchhhhccccccccCCCCcchHHHHhcccchHHHHHHHHHCCCCccccCCC--CCC
Confidence            457899999999999999999999986543  122377899999999999   8999999999999999999887  999


Q ss_pred             HHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCCCCCcccccccchHHHHHHHHHhhhhhh
Q 028370          110 PLHTAAKERKKEAVRFLIENGAFLPDDINDSRFNPPLHYCPSLEWAYEEMMRFQRESFS  168 (210)
Q Consensus       110 pL~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~~~l~~~~~  168 (210)
                      |||+|+..|+.+++++|+++|+++  +.+|..|.||||+|+..  +..+++++|.+...
T Consensus       208 pLh~A~~~g~~~~v~~Ll~~gad~--~~~d~~g~tpL~~A~~~--~~~~~v~~Ll~~ga  262 (278)
T 1dcq_A          208 ALHYCCLTDNAECLKLLLRGKASI--EIANESGETPLDIAKRL--KHEHCEELLTQALS  262 (278)
T ss_dssp             HHHHHHHTTCHHHHHHHHHTTCCT--TCCCTTSCCHHHHHHHT--TCHHHHHHHHHHHT
T ss_pred             HHHHHHHcCCHHHHHHHHHcCCCC--CCccCCCCCHHHHHHHc--CCHHHHHHHHHcCC
Confidence            999999999999999999999966  89999999999999954  45788888887654

>2b0o_E UPLC1; arfgap, structural genomics, structural genomics consortium, SGC, metal binding protein; 2.06A {Homo sapiens}

Probab=99.88  E-value=4e-22  Score=156.97  Aligned_cols=130  Identities=19%  Similarity=0.249  Sum_probs=113.2

Q ss_pred             CCChHHHHHHHcCCHHHHHHHHHCCCCccccccC--CCCCCCcHHHHHHHC---CcHHHHHHHHHcCCCCCcccCCCCCC
Q 028370           34 RGWTPLHIGARKGDIKLVKQLLDEGMDVNVAAWG--PKSKGVTPLHLAAQG---GHLEVMDVLLERGADIDARTKGACGW  108 (210)
Q Consensus        34 ~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~--~~~~g~t~L~~A~~~---~~~~~v~~Ll~~g~~~~~~~~~~~g~  108 (210)
                      .+.++|+.|+..|+.+.++.|++.|++++.....  .+..|.||||+|+..   ++.+++++|+++|++++..+..  |.
T Consensus       150 ~~~~~L~~A~~~g~~~~v~~ll~~g~d~~~~~~~~~~~~~g~t~Lh~A~~~~~~~~~~iv~~Ll~~gadvn~~d~~--G~  227 (301)
T 2b0o_E          150 PEPQRLWTAICNRDLLSVLEAFANGQDFGQPLPGPDAQAPEELVLHLAVKVANQASLPLVDFIIQNGGHLDAKAAD--GN  227 (301)
T ss_dssp             -CHHHHHHHHHTTCHHHHHHHHHTTCCTTSCEECSSSCSCEECHHHHHHHTCCTTTHHHHHHHHHHSSCTTCCCTT--CC
T ss_pred             chHHHHhhhhhccCHHHHHHHHhcCCcccccCCCcccCCCCccHHHHHHHhcccCcHHHHHHHHhcCCCCCCCCCC--CC
Confidence            3557899999999999999999999998862100  178899999999997   8999999999999999998877  99


Q ss_pred             hHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCCCCCcccccccchHHHHHHHHHhhhhhhc
Q 028370          109 TPLHTAAKERKKEAVRFLIENGAFLPDDINDSRFNPPLHYCPSLEWAYEEMMRFQRESFSA  169 (210)
Q Consensus       109 tpL~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~~~l~~~~~~  169 (210)
                      ||||+|+..|+.+++++|+++|+++  +.+|..|.|||++|+.  .+..+++++|.+....
T Consensus       228 TpLh~A~~~g~~~~v~~Ll~~gad~--~~~d~~G~TpL~~A~~--~~~~~iv~~Ll~~ga~  284 (301)
T 2b0o_E          228 TALHYAALYNQPDCLKLLLKGRALV--GTVNEAGETALDIARK--KHHKECEELLEQAQAG  284 (301)
T ss_dssp             CHHHHHHHTTCHHHHHHHHHTTCCC--SCCCTTSCCHHHHHHH--HTCHHHHHHHHHHHHH
T ss_pred             CHHHHHHHcCCHHHHHHHHHcCCCC--CCcCCCCCCHHHHHHH--cCCHHHHHHHHHhcCC
Confidence            9999999999999999999999966  8999999999999994  4457888888876543

>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B

Probab=99.88  E-value=1.8e-23  Score=159.29  Aligned_cols=127  Identities=24%  Similarity=0.278  Sum_probs=83.9

Q ss_pred             CCCCChHHHHHHHcCCHHHHHHHHHCCCCccccccCCCCCCCcHHHHHHHCCcHHHHHHHHHcCCCCCcccCCCCCChHH
Q 028370           32 DDRGWTPLHIGARKGDIKLVKQLLDEGMDVNVAAWGPKSKGVTPLHLAAQGGHLEVMDVLLERGADIDARTKGACGWTPL  111 (210)
Q Consensus        32 d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~~g~tpL  111 (210)
                      +..|.||||.|++.++.+.++.|+++|++++.     +..|.||||+|+..|+.+++++|++.|++++..+..  |.|||
T Consensus         2 ~~~g~t~L~~a~~~~~~~~~~~ll~~g~~~~~-----~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~d~~--g~t~L   74 (239)
T 1ycs_B            2 EITGQVSLPPGKRTNLRKTGSERIAHGMRVKF-----NPLPLALLLDSSLEGEFDLVQRIIYEVDDPSLPNDE--GITAL   74 (239)
T ss_dssp             ----------------------------------------CHHHHHHHHHHTCHHHHHHHTSTTSSCCCCCTT--SCCHH
T ss_pred             CccccccCchhhhhhhHHHHHHHhccCCCccc-----CchhhHHHHHHHHcCCHHHHHHHHHcCCCCCCcCCC--CCCHH
Confidence            45799999999999999999999999999875     467889999999999999999999999999988877  99999


Q ss_pred             HHHHhcCCHHHHHHHHHcCCCCCCCCCCCCCCCcccccccchHHHHHHHHHhhhhhhc
Q 028370          112 HTAAKERKKEAVRFLIENGAFLPDDINDSRFNPPLHYCPSLEWAYEEMMRFQRESFSA  169 (210)
Q Consensus       112 ~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~~~l~~~~~~  169 (210)
                      |+|+..|+.+++++|+++|+++  +.+|..|.||||+|+..  +..+++++|.+....
T Consensus        75 ~~A~~~g~~~~v~~Ll~~ga~~--~~~d~~g~tpL~~A~~~--~~~~~v~~Ll~~ga~  128 (239)
T 1ycs_B           75 HNAVCAGHTEIVKFLVQFGVNV--NAADSDGWTPLHCAASC--NNVQVCKFLVESGAA  128 (239)
T ss_dssp             HHHHHHTCHHHHHHHHHHTCCT--TCCCTTCCCHHHHHHHT--TCHHHHHHHHHTTCC
T ss_pred             HHHHHcCCHHHHHHHHHcCCCC--CccCCCCCCHHHHHHHc--CCHHHHHHHHHcCCC
Confidence            9999999999999999999966  88999999999999954  457899999876443

>2jab_A H10-2-G3; HER2, darpin, ankyrin repeat protein, membrane protein, human epidermal growth factor receptor 2, de novo protein; 1.70A {} PDB: 3hg0_D 2xzt_G 2xzd_G 2y0b_G 2v4h_C

Probab=99.88  E-value=6.3e-22  Score=137.94  Aligned_cols=99  Identities=37%  Similarity=0.579  Sum_probs=93.2

Q ss_pred             hhhcccCCCCChHHHHHHHcCCHHHHHHHHHCCCCccccccCCCCCCCcHHHHHHHCCcHHHHHHHHHcCCCCCcccCCC
Q 028370           26 RSVIDTDDRGWTPLHIGARKGDIKLVKQLLDEGMDVNVAAWGPKSKGVTPLHLAAQGGHLEVMDVLLERGADIDARTKGA  105 (210)
Q Consensus        26 ~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~  105 (210)
                      .+++.+|..|.||||+|+..|+.+++++|+++|++++..    +..|.||||+|+..|+.+++++|+++|++++..+.. 
T Consensus        38 ~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~----d~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~-  112 (136)
T 2jab_A           38 ADVNAKDEYGLTPLYLATAHGHLEIVEVLLKNGADVNAV----DAIGFTPLHLAAFIGHLEIAEVLLKHGADVNAQDKF-  112 (136)
T ss_dssp             CCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCC----CTTCCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTT-
T ss_pred             CCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCcC----CCCCCCHHHHHHHcCCHHHHHHHHHcCCCCcCcCCC-
Confidence            456778999999999999999999999999999999988    899999999999999999999999999999988877 


Q ss_pred             CCChHHHHHHhcCCHHHHHHHHHcC
Q 028370          106 CGWTPLHTAAKERKKEAVRFLIENG  130 (210)
Q Consensus       106 ~g~tpL~~A~~~g~~~~v~~Ll~~g  130 (210)
                       |.||||+|+..|+.+++++|+++|
T Consensus       113 -g~tpl~~A~~~~~~~~~~~Ll~~G  136 (136)
T 2jab_A          113 -GKTAFDISIGNGNEDLAEILQKLN  136 (136)
T ss_dssp             -SCCHHHHHHHTTCHHHHHHHHHC-
T ss_pred             -CCCHHHHHHHCCCHHHHHHHHHcC
Confidence             999999999999999999999876

>3jue_A Arfgap with coiled-coil, ANK repeat and PH domain containing protein 1; arfgap domain, zinc-binding module, GTPase activ metal-binding, nitration; 2.30A {Homo sapiens} PDB: 3t9k_A 4f1p_A

Probab=99.88  E-value=1.6e-22  Score=163.23  Aligned_cols=126  Identities=23%  Similarity=0.286  Sum_probs=114.4

Q ss_pred             CCChHHHHHHHc-CCHHHHHHHHHCCCCccccccCCC--CCCCcHHHHHHHCCcHHHHHHHHHcCCCCCcccCCCCCChH
Q 028370           34 RGWTPLHIGARK-GDIKLVKQLLDEGMDVNVAAWGPK--SKGVTPLHLAAQGGHLEVMDVLLERGADIDARTKGACGWTP  110 (210)
Q Consensus        34 ~g~t~L~~A~~~-g~~~~v~~Ll~~g~~~~~~~~~~~--~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~~g~tp  110 (210)
                      .+.|+||.|+.. |+.++++.|++.|++++..    +  ..|.||||+|+..|+.+++++|+++|++++..+..  |.||
T Consensus       198 ~~~t~L~~Aa~~~g~~~~v~~LL~~Gadvn~~----~~~~~g~TpLh~Aa~~g~~~iv~~LL~~Gadvn~~d~~--G~Tp  271 (368)
T 3jue_A          198 HPGALLFRASGHPPSLPTMADALAHGADVNWV----NGGQDNATPLIQATAANSLLACEFLLQNGANVNQADSA--GRGP  271 (368)
T ss_dssp             CHHHHHHHHTSSSCCHHHHHHHHHTTCCTTCC----CTTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTT--SCCH
T ss_pred             CCCcHHHHHHHccCCHHHHHHHHHcCCCCCcc----ccccCCCCHHHHHHHCCCHHHHHHHHHcCCCCCCCCCC--CCCH
Confidence            456899999999 9999999999999999987    6  78999999999999999999999999999998877  9999


Q ss_pred             HHHHHhcCCHHHHHHHHHcCCCCCCCCCCCCCCCcccccccchHHHHHHHHHhhhhhhc
Q 028370          111 LHTAAKERKKEAVRFLIENGAFLPDDINDSRFNPPLHYCPSLEWAYEEMMRFQRESFSA  169 (210)
Q Consensus       111 L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~~~l~~~~~~  169 (210)
                      ||+|+..|+.+++++|+++|+++  +..|..|.||||+|+..  +..+++++|......
T Consensus       272 Lh~A~~~g~~~~v~~LL~~Gad~--~~~d~~G~TpL~~A~~~--g~~~iv~lLl~~~~~  326 (368)
T 3jue_A          272 LHHATILGHTGLACLFLKRGADL--GARDSEGRDPLTIAMET--ANADIVTLLRLAKMR  326 (368)
T ss_dssp             HHHHHHHTCHHHHHHHHHTTCCT--TCCCTTSCCHHHHHHHT--TCHHHHHHHHHHHC-
T ss_pred             HHHHHHcCcHHHHHHHHHCcCCC--CCcCCCCCCHHHHHHHC--CCHHHHHHHHHcCCC
Confidence            99999999999999999999966  89999999999999954  457888888876533

>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}

Probab=99.88  E-value=2.5e-22  Score=151.91  Aligned_cols=127  Identities=29%  Similarity=0.448  Sum_probs=93.1

Q ss_pred             cCCCCChHHHHHHHcCCHHHHHHHHHCCCCccccccCCCCCCCcHHHHHHHCCcHHHHHHHHHcCCCCCcccCCCCCChH
Q 028370           31 TDDRGWTPLHIGARKGDIKLVKQLLDEGMDVNVAAWGPKSKGVTPLHLAAQGGHLEVMDVLLERGADIDARTKGACGWTP  110 (210)
Q Consensus        31 ~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~~g~tp  110 (210)
                      .+..|.||||+|+..|+.+++++|++.|++++..    +..|.||||+|+..|+.+++++|++.|++++..+..  |.||
T Consensus        72 ~~~~~~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~----~~~g~t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~--g~t~  145 (240)
T 3eu9_A           72 GGDLNSTPLHWATRQGHLSMVVQLMKYGADPSLI----DGEGCSCIHLAAQFGHTSIVAYLIAKGQDVDMMDQN--GMTP  145 (240)
T ss_dssp             BTTTTBCHHHHHHHHTCHHHHHHHHHTTCCTTCC----CTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTT--SCCH
T ss_pred             cCCcCCChhHHHHHcCCHHHHHHHHHcCCCCccc----CCCCCCHHHHHHHcCHHHHHHHHHhcCCCccccCCC--CCcH
Confidence            4445778888888888888888888888777766    777788888888888888888888888777777666  7777


Q ss_pred             HHHHHhcCC-HHHHHHHHHcCCCCCCCCCCC-CCCCcccccccchHHHHHHHHHhhhhh
Q 028370          111 LHTAAKERK-KEAVRFLIENGAFLPDDINDS-RFNPPLHYCPSLEWAYEEMMRFQRESF  167 (210)
Q Consensus       111 L~~A~~~g~-~~~v~~Ll~~g~~~~~~~~~~-~g~t~l~~a~~~~~~~~~~~~~l~~~~  167 (210)
                      ||+|+..++ .+++++|++.|+++  +..+. .|.||||+|+.  .+..+++++|.+..
T Consensus       146 l~~a~~~~~~~~~~~~L~~~~~~~--~~~~~~~g~t~L~~A~~--~~~~~~v~~Ll~~g  200 (240)
T 3eu9_A          146 LMWAAYRTHSVDPTRLLLTFNVSV--NLGDKYHKNTALHWAVL--AGNTTVISLLLEAG  200 (240)
T ss_dssp             HHHHHHHCCSSTTHHHHHHTTCCT--TCCCTTTCCCHHHHHHH--HTCHHHHHHHHHHT
T ss_pred             HHHHHHhCChHHHHHHHHhcCCCc--chhhccCCCcHHHHHHH--cCCHHHHHHHHHcC
Confidence            777775555 67777777777755  55554 77777777773  33467777777653

>2b0o_E UPLC1; arfgap, structural genomics, structural genomics consortium, SGC, metal binding protein; 2.06A {Homo sapiens}

Probab=99.88  E-value=2.3e-22  Score=158.41  Aligned_cols=109  Identities=26%  Similarity=0.306  Sum_probs=97.9

Q ss_pred             cCCCCChHHHHHHHc---CCHHHHHHHHHCCCCccccccCCCCCCCcHHHHHHHCCcHHHHHHHHHcCCCCCcccCCCCC
Q 028370           31 TDDRGWTPLHIGARK---GDIKLVKQLLDEGMDVNVAAWGPKSKGVTPLHLAAQGGHLEVMDVLLERGADIDARTKGACG  107 (210)
Q Consensus        31 ~d~~g~t~L~~A~~~---g~~~~v~~Ll~~g~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~~g  107 (210)
                      .|..|.||||+|+..   |+.+++++|+++|++++..    |..|+||||+|+..|+.+++++|++.|++++..+..  |
T Consensus       186 ~~~~g~t~Lh~A~~~~~~~~~~iv~~Ll~~gadvn~~----d~~G~TpLh~A~~~g~~~~v~~Ll~~gad~~~~d~~--G  259 (301)
T 2b0o_E          186 AQAPEELVLHLAVKVANQASLPLVDFIIQNGGHLDAK----AADGNTALHYAALYNQPDCLKLLLKGRALVGTVNEA--G  259 (301)
T ss_dssp             SCSCEECHHHHHHHTCCTTTHHHHHHHHHHSSCTTCC----CTTCCCHHHHHHHTTCHHHHHHHHHTTCCCSCCCTT--S
T ss_pred             cCCCCccHHHHHHHhcccCcHHHHHHHHhcCCCCCCC----CCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCcCCC--C
Confidence            588999999999997   8999999999999999988    999999999999999999999999999999999887  9


Q ss_pred             ChHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCCCCCcccccccch
Q 028370          108 WTPLHTAAKERKKEAVRFLIENGAFLPDDINDSRFNPPLHYCPSLE  153 (210)
Q Consensus       108 ~tpL~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~g~t~l~~a~~~~  153 (210)
                      .||||+|+..|+.+++++|+++|++        .|.||||+|+..+
T Consensus       260 ~TpL~~A~~~~~~~iv~~Ll~~ga~--------~g~tpLh~A~~~g  297 (301)
T 2b0o_E          260 ETALDIARKKHHKECEELLEQAQAG--------TFAFPLHVDYSWV  297 (301)
T ss_dssp             CCHHHHHHHHTCHHHHHHHHHHHHH--------TTSSCCC------
T ss_pred             CCHHHHHHHcCCHHHHHHHHHhcCC--------CCCChhHHHHhcC
Confidence            9999999999999999999999984        4789999998544

>2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor, cytoplasm, phosphorylation, P53 binding protein, ANK repeat, SH3 domain; 2.10A {Homo sapiens}

Probab=99.88  E-value=4.6e-23  Score=156.28  Aligned_cols=127  Identities=24%  Similarity=0.337  Sum_probs=105.2

Q ss_pred             chhHHHHHHhhHHHhhhhcccCCCCChHHHHHHHcCCHHHHHHHHHCCCCccccccCCCCCCCcHHHHHHHCCcHHHHHH
Q 028370           11 GPFTLQRKASRKRFFRSVIDTDDRGWTPLHIGARKGDIKLVKQLLDEGMDVNVAAWGPKSKGVTPLHLAAQGGHLEVMDV   90 (210)
Q Consensus        11 ~~~~~~~~~~~~~~~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~   90 (210)
                      |....+......  ..+++.+|..|+||||+|+..|+.+++++|++.|++++..    |..|.||||+|+..|+.+++++
T Consensus        32 g~~~~v~~Ll~~--g~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~ga~~n~~----d~~g~tpLh~A~~~g~~~~v~~  105 (229)
T 2vge_A           32 GELEVVQQAVKE--MNDPSQPNEEGITALHNAICGANYSIVDFLITAGANVNSP----DSHGWTPLHCAASCNDTVICMA  105 (229)
T ss_dssp             TCHHHHHHHHHH--SSCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCC----CTTCCCHHHHHHHTTCHHHHHH
T ss_pred             CCHHHHHHHHhc--CCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCC----CCCCCCHHHHHHHcCCHHHHHH
Confidence            344444443332  3467789999999999999999999999999999999988    8999999999999999999999


Q ss_pred             HHHcCCCCCccc-CCCCCChHHHHH--HhcCCHHHHHHHHHcCCCCCCCCCCCCCCCccc
Q 028370           91 LLERGADIDART-KGACGWTPLHTA--AKERKKEAVRFLIENGAFLPDDINDSRFNPPLH  147 (210)
Q Consensus        91 Ll~~g~~~~~~~-~~~~g~tpL~~A--~~~g~~~~v~~Ll~~g~~~~~~~~~~~g~t~l~  147 (210)
                      |++.|++++..+ .+  |.||||+|  +..|+.+++++|+++|+++  +..+..|.||++
T Consensus       106 Ll~~ga~~~~~~~~~--g~tpL~~A~a~~~~~~~~v~~Ll~~ga~~--~~~~~~~~~~l~  161 (229)
T 2vge_A          106 LVQHGAAIFATTLSD--GATAFEKCDPYREGYADCATYLADVEQSM--GLMNSGAVYALW  161 (229)
T ss_dssp             HHTTTCCTTCCCSST--TCCTGGGCCTTSTTHHHHHHHHHHHHHHT--TTSGGGEEEESS
T ss_pred             HHHcCCCcccccCCC--CCCHHHHHHHHhcChHHHHHHHHHcCCCc--ccccCCchHHHH
Confidence            999999999875 45  99999999  9999999999999987754  444444444444

>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin repeat, signaling protein; NMR {Mus musculus} SCOP: i.11.1.1

Probab=99.88  E-value=1.2e-22  Score=141.55  Aligned_cols=100  Identities=24%  Similarity=0.340  Sum_probs=94.6

Q ss_pred             hhhcccCCCCChHHHHHHHcCCHHHHHHHHHCCCCccccccCCCCC-CCcHHHHHHHCCcHHHHHHHHHcCCCCCcccCC
Q 028370           26 RSVIDTDDRGWTPLHIGARKGDIKLVKQLLDEGMDVNVAAWGPKSK-GVTPLHLAAQGGHLEVMDVLLERGADIDARTKG  104 (210)
Q Consensus        26 ~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~-g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~  104 (210)
                      .+++.+|..|+||||+|+. |+.+++++|+++|++++..    +.. |.||||+|+..|+.+++++|++.|++++..+..
T Consensus        36 ~~~~~~~~~g~t~L~~A~~-~~~~~v~~Ll~~g~~~~~~----~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~d~~  110 (136)
T 1d9s_A           36 ADPNALNRFGRRPIQVMMM-GSAQVAELLLLHGAEPNCA----DPATLTRPVHDAAREGFLDTLVVLHRAGARLDVCDAW  110 (136)
T ss_dssp             CCTTCCCTTCCTTTTTSTT-SCHHHHHHHHHHTCCSSCC----BTTTTBCHHHHHHHHTCHHHHHHHHHTCCCCCCCSSS
T ss_pred             CCcCCcCCCCCCHHHHHHc-CCHHHHHHHHHCCCCCCCc----CCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCccCCC
Confidence            4577789999999999999 9999999999999999988    888 999999999999999999999999999999887


Q ss_pred             CCCChHHHHHHhcCCHHHHHHHHHcCCC
Q 028370          105 ACGWTPLHTAAKERKKEAVRFLIENGAF  132 (210)
Q Consensus       105 ~~g~tpL~~A~~~g~~~~v~~Ll~~g~~  132 (210)
                        |.||||+|+..++.+++++|+++|++
T Consensus       111 --g~tpl~~A~~~~~~~~~~~Ll~~Gad  136 (136)
T 1d9s_A          111 --GRLPVDLAEEQGHRDIARYLHAATGD  136 (136)
T ss_dssp             --SSCHHHHHHHHTCHHHHHHHHHHHCC
T ss_pred             --CCCHHHHHHHcCCHHHHHHHHHcCCC
Confidence              99999999999999999999999984

>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}

Probab=99.87  E-value=7.2e-22  Score=149.35  Aligned_cols=150  Identities=26%  Similarity=0.293  Sum_probs=123.1

Q ss_pred             cchhHHHHHHhhHHHhhhhcccCCCCChHHHHHHHcCCHHHHHHHHHCCCCccccccCCCCCCCcHHHHHHHCCcHHHHH
Q 028370           10 LGPFTLQRKASRKRFFRSVIDTDDRGWTPLHIGARKGDIKLVKQLLDEGMDVNVAAWGPKSKGVTPLHLAAQGGHLEVMD   89 (210)
Q Consensus        10 ~~~~~~~~~~~~~~~~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~   89 (210)
                      .|.+..+.......  .+++.+|..|.||||+|+..|+.+++++|++.|++++...   +..|.||||+|+..|+.++++
T Consensus        19 ~g~~~~~~~Ll~~g--~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~---~~~~~t~L~~A~~~~~~~~v~   93 (240)
T 3eu9_A           19 YGIYERCRELVEAG--YDVRQPDKENVTLLHWAAINNRIDLVKYYISKGAIVDQLG---GDLNSTPLHWATRQGHLSMVV   93 (240)
T ss_dssp             TTCHHHHHHHHHTT--CCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCB---TTTTBCHHHHHHHHTCHHHHH
T ss_pred             cCChHHHHHHHHcC--CCcCCCCCCCCCHHHHHHHhCCHHHHHHHHHcCCcchhhc---CCcCCChhHHHHHcCCHHHHH
Confidence            35555554444433  4567789999999999999999999999999999887653   556899999999999999999


Q ss_pred             HHHHcCCCCCcccCCCCCChHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCCCCCcccccccchHHHHHHHHHhhhhhhc
Q 028370           90 VLLERGADIDARTKGACGWTPLHTAAKERKKEAVRFLIENGAFLPDDINDSRFNPPLHYCPSLEWAYEEMMRFQRESFSA  169 (210)
Q Consensus        90 ~Ll~~g~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~~~l~~~~~~  169 (210)
                      +|++.|++++..+..  |.||||+|+..|+.+++++|+++|+++  +..+..|.||+++|+..+. ..++++++.+....
T Consensus        94 ~Ll~~g~~~~~~~~~--g~t~l~~A~~~~~~~~~~~Ll~~~~~~--~~~~~~g~t~l~~a~~~~~-~~~~~~~L~~~~~~  168 (240)
T 3eu9_A           94 QLMKYGADPSLIDGE--GCSCIHLAAQFGHTSIVAYLIAKGQDV--DMMDQNGMTPLMWAAYRTH-SVDPTRLLLTFNVS  168 (240)
T ss_dssp             HHHHTTCCTTCCCTT--SCCHHHHHHHTTCHHHHHHHHHTTCCT--TCCCTTSCCHHHHHHHHCC-SSTTHHHHHHTTCC
T ss_pred             HHHHcCCCCcccCCC--CCCHHHHHHHcCHHHHHHHHHhcCCCc--cccCCCCCcHHHHHHHhCC-hHHHHHHHHhcCCC
Confidence            999999999988777  999999999999999999999999965  8889999999999984332 24566666665433

>1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP: k.37.1.1

Probab=99.87  E-value=3.9e-21  Score=131.39  Aligned_cols=101  Identities=51%  Similarity=0.847  Sum_probs=95.4

Q ss_pred             hhhcccCCCCChHHHHHHHcCCHHHHHHHHHCCCCccccccCCCCCCCcHHHHHHHCCcHHHHHHHHHcCCCCCcccCCC
Q 028370           26 RSVIDTDDRGWTPLHIGARKGDIKLVKQLLDEGMDVNVAAWGPKSKGVTPLHLAAQGGHLEVMDVLLERGADIDARTKGA  105 (210)
Q Consensus        26 ~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~  105 (210)
                      .+++.+|..|.||||+|+..|+.+++++|++.|++++..    +..|.||||+|+..++.+++++|+++|++++..+.. 
T Consensus        26 ~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~----~~~g~t~l~~A~~~~~~~~~~~Ll~~g~~~~~~~~~-  100 (126)
T 1n0r_A           26 ADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNAK----DKNGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKN-  100 (126)
T ss_dssp             CCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCC----CTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTT-
T ss_pred             CCCCCcCCCCCcHHHHHHHcCcHHHHHHHHHcCCCCccc----CCCCCcHHHHHHHcChHHHHHHHHHcCCCCcccCCC-
Confidence            456778999999999999999999999999999999888    899999999999999999999999999999988877 


Q ss_pred             CCChHHHHHHhcCCHHHHHHHHHcCCC
Q 028370          106 CGWTPLHTAAKERKKEAVRFLIENGAF  132 (210)
Q Consensus       106 ~g~tpL~~A~~~g~~~~v~~Ll~~g~~  132 (210)
                       |.|||++|+..|+.+++++|+++|++
T Consensus       101 -g~t~l~~A~~~~~~~~~~~Ll~~Gad  126 (126)
T 1n0r_A          101 -GRTPLHLAARNGHLEVVKLLLEAGAY  126 (126)
T ss_dssp             -SCCHHHHHHHTTCHHHHHHHHHHTCC
T ss_pred             -CCCHHHHHHHcCcHHHHHHHHHcCCC
Confidence             99999999999999999999999984

>3lvq_E ARF-GAP with SH3 domain, ANK repeat and PH domain containing protein 3, ADP-ribosylation...; GDP, ASAP3, UPLC1, linkers, alternat splicing; HET: GDP; 3.38A {Homo sapiens} PDB: 3lvr_E*

Probab=99.87  E-value=8.9e-22  Score=164.97  Aligned_cols=129  Identities=19%  Similarity=0.260  Sum_probs=112.1

Q ss_pred             CCChHHHHHHHcCCHHHHHHHHHCCCCccccccC--CCCCCCcHHHHHHH---CCcHHHHHHHHHcCCCCCcccCCCCCC
Q 028370           34 RGWTPLHIGARKGDIKLVKQLLDEGMDVNVAAWG--PKSKGVTPLHLAAQ---GGHLEVMDVLLERGADIDARTKGACGW  108 (210)
Q Consensus        34 ~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~--~~~~g~t~L~~A~~---~~~~~~v~~Ll~~g~~~~~~~~~~~g~  108 (210)
                      ...+.||.|+..|+.+.++.|++.|++++.....  .+..|.||||+|+.   .|+.+++++|+++|++++.++..  |.
T Consensus       131 ~~~~~L~~A~~~g~~~~v~~ll~~g~~~n~~~~~~~~~~~g~t~Lh~A~~~a~~g~~~~v~~Ll~~ga~vn~~d~~--g~  208 (497)
T 3lvq_E          131 PEPQRLWTAICNRDLLSVLEAFANGQDFGQPLPGPDAQAPEELVLHLAVKVANQASLPLVDFIIQNGGHLDAKAAD--GN  208 (497)
T ss_dssp             -CHHHHHHHHHHTCHHHHHHHHHTTCCSSSCBCCSSSCCSCBCHHHHHHHTCCTTTHHHHHHHHHHSCCTTCCCSS--SC
T ss_pred             ccHHHHHHHHhccCHHHHHHHHhhcccccCCCCCcccccccchHHHHHHHhcccccHHHHHHHHHcCCCCCccCCC--CC
Confidence            3447899999999999999999999998755211  26689999999976   89999999999999999999887  99


Q ss_pred             hHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCCCCCcccccccchHHHHHHHHHhhhhhh
Q 028370          109 TPLHTAAKERKKEAVRFLIENGAFLPDDINDSRFNPPLHYCPSLEWAYEEMMRFQRESFS  168 (210)
Q Consensus       109 tpL~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~~~l~~~~~  168 (210)
                      ||||+|+..|+.+++++|+++|+++  +.+|..|.||||+|+..  +..+++++|.+...
T Consensus       209 TpLh~A~~~g~~~~v~~Ll~~ga~~--~~~d~~g~tpl~~A~~~--~~~~~~~~Ll~~ga  264 (497)
T 3lvq_E          209 TALHYAALYNQPDCLKLLLKGRALV--GTVNEAGETALDIARKK--HHKECEELLEQAQA  264 (497)
T ss_dssp             CHHHHHTTTTCHHHHHHHHHTCCCC--SCCCTTCCCHHHHHHHT--TCHHHHHHHHHTCC
T ss_pred             cHHHHHHHcCCHHHHHHHHHcCCCC--CCcCCCCCCHHHHHHHc--CCHHHHHHHHHhCC
Confidence            9999999999999999999999966  89999999999999954  45788888887643

>1dcq_A PYK2-associated protein beta; zinc-binding module, ankyrin repeats, metal binding protein; 2.10A {Mus musculus} SCOP: d.211.1.1 g.45.1.1

Probab=99.86  E-value=1.5e-21  Score=152.05  Aligned_cols=110  Identities=22%  Similarity=0.311  Sum_probs=100.2

Q ss_pred             hcccCCCCChHHHHHHHc---CCHHHHHHHHHCCCCccccccCCCCCCCcHHHHHHHCCcHHHHHHHHHcCCCCCcccCC
Q 028370           28 VIDTDDRGWTPLHIGARK---GDIKLVKQLLDEGMDVNVAAWGPKSKGVTPLHLAAQGGHLEVMDVLLERGADIDARTKG  104 (210)
Q Consensus        28 ~~~~d~~g~t~L~~A~~~---g~~~~v~~Ll~~g~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~  104 (210)
                      ++..|..|.||||+|+..   |+.+++++|+++|++++..    |..|.||||+|+..|+.+++++|++.|++++..+.+
T Consensus       162 l~~~~~~g~t~Lh~A~~~~~~~~~~~v~~Ll~~ga~in~~----d~~g~TpLh~A~~~g~~~~v~~Ll~~gad~~~~d~~  237 (278)
T 1dcq_A          162 LANGHEPDETALHLAVRSVDRTSLHIVDFLVQNSGNLDKQ----TGKGSTALHYCCLTDNAECLKLLLRGKASIEIANES  237 (278)
T ss_dssp             CSSCSSTTCBHHHHHHHHCCTTTHHHHHHHHHHCSCTTCC----CTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTT
T ss_pred             ccccccCCCCcchHHHHhcccchHHHHHHHHHCCCCcccc----CCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCccCC
Confidence            445688999999999999   8999999999999999988    999999999999999999999999999999999887


Q ss_pred             CCCChHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCCCCCcccccccch
Q 028370          105 ACGWTPLHTAAKERKKEAVRFLIENGAFLPDDINDSRFNPPLHYCPSLE  153 (210)
Q Consensus       105 ~~g~tpL~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~g~t~l~~a~~~~  153 (210)
                        |.||||+|+..|+.+++++|+++|++          .+++|.++...
T Consensus       238 --g~tpL~~A~~~~~~~~v~~Ll~~ga~----------~~~~~~~v~~~  274 (278)
T 1dcq_A          238 --GETPLDIAKRLKHEHCEELLTQALSG----------RFNSHVHVEYE  274 (278)
T ss_dssp             --SCCHHHHHHHTTCHHHHHHHHHHHTT----------CCCSSCCCCCC
T ss_pred             --CCCHHHHHHHcCCHHHHHHHHHcCCC----------CCCcceeeecc
Confidence              99999999999999999999999983          35667766544

>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis}

Probab=99.86  E-value=1.7e-21  Score=143.09  Aligned_cols=122  Identities=16%  Similarity=0.157  Sum_probs=104.9

Q ss_pred             CChHHHHHHHcCCHHHHHHHHHCCCCccccccCCCCCCCcHHHHHHHCCcH----HHHHHHHHcCCCCCcccCCCCCChH
Q 028370           35 GWTPLHIGARKGDIKLVKQLLDEGMDVNVAAWGPKSKGVTPLHLAAQGGHL----EVMDVLLERGADIDARTKGACGWTP  110 (210)
Q Consensus        35 g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~g~t~L~~A~~~~~~----~~v~~Ll~~g~~~~~~~~~~~g~tp  110 (210)
                      +.++|+.|++.|+.+.++.++..+.+.  ..   +..|+||||+|+..++.    +++++|++.|++++.++..  |+||
T Consensus         6 ~~~~l~~Aa~~g~~~~~~~l~~~~~~~--~~---~~~g~T~Lh~A~~~~~~~~~~~iv~~Ll~~Gadvn~~d~~--g~Tp   78 (186)
T 3t8k_A            6 EYRTVSAAAMLGTYEDFLELFEKGYED--KE---SVLKSNILYDVLRNNNDEARYKISMFLINKGADIKSRTKE--GTTL   78 (186)
T ss_dssp             HCSSHHHHHHHSCHHHHHHHHHHSSSC--HH---HHHTTTHHHHHTTCSCHHHHHHHHHHHHHTTCCSSCCCTT--CCCT
T ss_pred             cccHHHHHHHcCCHHHHHHHHhcCccc--cc---ccCCCCHHHHHHHcCCcchHHHHHHHHHHCCCCCCCCCCC--CCcH
Confidence            467899999999999999999887543  30   26799999999999975    5999999999999999877  9999


Q ss_pred             HHHHHhcCC------HHHHHHHHHcCCCCCCCCCCCCCC-Ccccccccch---HHHHHHHHHhhh
Q 028370          111 LHTAAKERK------KEAVRFLIENGAFLPDDINDSRFN-PPLHYCPSLE---WAYEEMMRFQRE  165 (210)
Q Consensus       111 L~~A~~~g~------~~~v~~Ll~~g~~~~~~~~~~~g~-t~l~~a~~~~---~~~~~~~~~l~~  165 (210)
                      ||+|+..++      .+++++|+++|+++  +.+|..|. ||||+|+..+   ....+++++|.+
T Consensus        79 Lh~a~~~~~~~~~~~~~iv~~Ll~~Gadi--n~~d~~g~ttpLh~A~~~~~~~~~~~~iv~~Ll~  141 (186)
T 3t8k_A           79 FFPLFQGGGNDITGTTELCKIFLEKGADI--TALYKPYKIVVFKNIFNYFVDENEMIPLYKLIFS  141 (186)
T ss_dssp             HHHHHHHCTTCHHHHHHHHHHHHHTTCCS--SSCBGGGTBCTTGGGGGCCSCHHHHHHHHHHHHT
T ss_pred             HHHHHHcCCcchhhHHHHHHHHHHCCCCC--CccCCCcCchHHHHHHHcCCChhhHHHHHHHHHH
Confidence            999999887      68999999999966  89999999 9999998633   445678888876

>4g8k_A 2-5A-dependent ribonuclease; ankyrin-repeat domain, single-stranded RNA, hydrolase; 2.40A {Homo sapiens} PDB: 4g8l_A*

Probab=99.85  E-value=3.3e-21  Score=153.52  Aligned_cols=128  Identities=27%  Similarity=0.336  Sum_probs=111.2

Q ss_pred             ccCCCCChHHHHHHHcCCHHHHHHHHH-CCCCccccccCCCCCCCcHHHHHHHCCc----HHHHHHHHHcCCCCCcccCC
Q 028370           30 DTDDRGWTPLHIGARKGDIKLVKQLLD-EGMDVNVAAWGPKSKGVTPLHLAAQGGH----LEVMDVLLERGADIDARTKG  104 (210)
Q Consensus        30 ~~d~~g~t~L~~A~~~g~~~~v~~Ll~-~g~~~~~~~~~~~~~g~t~L~~A~~~~~----~~~v~~Ll~~g~~~~~~~~~  104 (210)
                      ..+..|.||||+|++.|+.+++++|++ .|++++..    +..|.|+++.++..+.    ..++++|++.|++++.++..
T Consensus       163 ~~~~~g~T~L~~A~~~g~~~~v~~LL~~~gad~n~~----d~~g~t~l~~~~~~~~~~~~~~i~~lLl~~gad~n~~d~~  238 (337)
T 4g8k_A          163 RLRKGGATALMDAAEKGHVEVLKILLDEMGADVNAC----DNMGRNALIHALLSSDDSDVEAITHLLLDHGADVNVRGER  238 (337)
T ss_dssp             -CTTCSCCHHHHHHHHTCHHHHHHHHHHSCCCTTCC----CTTSCCHHHHHHHHSCTTTHHHHHHHHHHTTCCTTCCCGG
T ss_pred             cccCCCCcHHHHHHHCCCHHHHHHHHhccCCCcCcc----CCCCCcHHHHHHHHcCcccHHHHHHHHHHCCCCCCCcCCC
Confidence            356679999999999999999999995 69999988    8999999998876443    46889999999999998877


Q ss_pred             CCCChHHHHHHhcCCHHHHHHHHHc-CCCCCCCCCCCCCCCcccccccchHHHHHHHHHhhhhh
Q 028370          105 ACGWTPLHTAAKERKKEAVRFLIEN-GAFLPDDINDSRFNPPLHYCPSLEWAYEEMMRFQRESF  167 (210)
Q Consensus       105 ~~g~tpL~~A~~~g~~~~v~~Ll~~-g~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~~~l~~~~  167 (210)
                        |.||||+|+..|+.+++++|++. |+++  +.+|..|.||||+|+..  +..+++++|.+..
T Consensus       239 --g~t~L~~a~~~~~~~~v~~Ll~~~~~~v--n~~d~~G~TpL~~A~~~--g~~~iv~~Ll~~G  296 (337)
T 4g8k_A          239 --GKTPLILAVEKKHLGLVQRLLEQEHIEI--NDTDSDGKTALLLAVEL--KLKKIAELLCKRG  296 (337)
T ss_dssp             --GCCHHHHHHHTTCHHHHHHHHTSTTCCT--TCBCTTSCBHHHHHHHT--TCHHHHHHHHTTS
T ss_pred             --CCCHHHHHHHhhhhHHHHHHHHhcCCcc--cCcCCCCCCHHHHHHHc--CCHHHHHHHHHCC
Confidence              99999999999999999999986 6755  88999999999999954  4588999998764

>2zgd_A 3 repeat synthetic ankyrin; ankyrin repeat, hydroxylated, de novo protein; 1.90A {Synthetic} PDB: 2zgg_A 2xen_A

Probab=99.85  E-value=7.5e-21  Score=127.83  Aligned_cols=97  Identities=34%  Similarity=0.458  Sum_probs=84.7

Q ss_pred             HhhhhcccCCCCChHHHHHHHcCCHHHHHHHHHCCCCccccccCCCCCCCcHHHHHHHCCcHHHHHHHHHcCCCCCcccC
Q 028370           24 FFRSVIDTDDRGWTPLHIGARKGDIKLVKQLLDEGMDVNVAAWGPKSKGVTPLHLAAQGGHLEVMDVLLERGADIDARTK  103 (210)
Q Consensus        24 ~~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~  103 (210)
                      ........|.+|.|+||+|+..|+.+++++|++.|++++..    |..|.||||+|+..|+.+++++|+++|++++..+.
T Consensus        13 ~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~i~~~----d~~g~tpLh~A~~~~~~~~v~~Ll~~ga~~~~~d~   88 (110)
T 2zgd_A           13 LVPRGSHMGSDLGKKLLEAARAGQDDEVRILMANGADVAAK----DKNGSTPLHLAARNGHLEVVKLLLEAGADVXAQDK   88 (110)
T ss_dssp             ---------CCHHHHHHHHHHHTCHHHHHHHHHTTCCTTCC----CTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCT
T ss_pred             CCCcccccCCccchHHHHHHHcCCHHHHHHHHHcCCCCCcc----CCCCCCHHHHHHHcCCHHHHHHHHHcCCCcccccc
Confidence            34456678999999999999999999999999999999988    89999999999999999999999999999998887


Q ss_pred             CCCCChHHHHHHhcCCHHHHHHH
Q 028370          104 GACGWTPLHTAAKERKKEAVRFL  126 (210)
Q Consensus       104 ~~~g~tpL~~A~~~g~~~~v~~L  126 (210)
                      .  |.||||+|+..|+.+++++|
T Consensus        89 ~--g~tpl~~A~~~~~~~~~~~L  109 (110)
T 2zgd_A           89 F--GKTAFDISIDNGNEDLAEIL  109 (110)
T ss_dssp             T--SCCHHHHHHHHTCHHHHHHH
T ss_pred             C--CCcHHHHHHHcCCHHHHHHh
Confidence            7  99999999999999999987

>4g8k_A 2-5A-dependent ribonuclease; ankyrin-repeat domain, single-stranded RNA, hydrolase; 2.40A {Homo sapiens} PDB: 4g8l_A*

Probab=99.84  E-value=4.5e-20  Score=146.99  Aligned_cols=28  Identities=39%  Similarity=0.681  Sum_probs=14.9

Q ss_pred             CChHHHHHHHcCCHHHHHHHHHCCCCcc
Q 028370           35 GWTPLHIGARKGDIKLVKQLLDEGMDVN   62 (210)
Q Consensus        35 g~t~L~~A~~~g~~~~v~~Ll~~g~~~~   62 (210)
                      |+||||+|+..|+.+++++|+++|++++
T Consensus        59 g~TpLh~A~~~g~~~iv~~Ll~~ga~~~   86 (337)
T 4g8k_A           59 GWTPLHNAVQMSREDIVELLLRHGADPV   86 (337)
T ss_dssp             CCCHHHHHHHTTCHHHHHHHHHTTCCTT
T ss_pred             CcCHHHHHHHcCCHHHHHHHHHcCCchh
Confidence            5555555555555555555555554443

>1n0q_A 3ANK, 3 ankyrin repeats; structural protein; 1.26A {} SCOP: k.37.1.1

Probab=99.83  E-value=1.1e-20  Score=123.18  Aligned_cols=90  Identities=44%  Similarity=0.689  Sum_probs=80.8

Q ss_pred             CCCcHHHHHHHCCcHHHHHHHHHcCCCCCcccCCCCCChHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCCCCCcccccc
Q 028370           71 KGVTPLHLAAQGGHLEVMDVLLERGADIDARTKGACGWTPLHTAAKERKKEAVRFLIENGAFLPDDINDSRFNPPLHYCP  150 (210)
Q Consensus        71 ~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~g~t~l~~a~  150 (210)
                      +|+||||+|+..|+.+++++|++.|++++.++..  |.||||+|+..|+.+++++|+++|+++  +.+|..|.||||+|+
T Consensus         1 ~g~t~L~~A~~~~~~~~v~~Ll~~g~~~n~~d~~--g~t~L~~A~~~~~~~~v~~Ll~~ga~~--~~~d~~g~t~l~~A~   76 (93)
T 1n0q_A            1 NGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKN--GRTPLHLAARNGHLEVVKLLLEAGADV--NAKDKNGRTPLHLAA   76 (93)
T ss_dssp             --CCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTT--SCCHHHHHHHTTCHHHHHHHHHTTCCT--TCCCTTSCCHHHHHH
T ss_pred             CCCcHHHHHHHcCCHHHHHHHHHcCCCCcccCCC--CCCHHHHHHHcCCHHHHHHHHHcCCCC--CccCCCCCCHHHHHH
Confidence            4789999999999999999999999999998877  999999999999999999999999966  889999999999999


Q ss_pred             cchHHHHHHHHHhhhh
Q 028370          151 SLEWAYEEMMRFQRES  166 (210)
Q Consensus       151 ~~~~~~~~~~~~l~~~  166 (210)
                      ..  +..+++++|.+.
T Consensus        77 ~~--~~~~~~~~Ll~~   90 (93)
T 1n0q_A           77 RN--GHLEVVKLLLEA   90 (93)
T ss_dssp             HT--TCHHHHHHHHHT
T ss_pred             Hc--CCHHHHHHHHHc
Confidence            54  457888888754

>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A

Probab=99.81  E-value=3e-20  Score=139.66  Aligned_cols=109  Identities=22%  Similarity=0.266  Sum_probs=88.5

Q ss_pred             hhhcccCCCCChHHHHHHHcCCHHHHHHHHHC-CCCccccccCCCCCCCcHHHHHHHCCcHHHHHHHHHcCCCCCcccCC
Q 028370           26 RSVIDTDDRGWTPLHIGARKGDIKLVKQLLDE-GMDVNVAAWGPKSKGVTPLHLAAQGGHLEVMDVLLERGADIDARTKG  104 (210)
Q Consensus        26 ~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~-g~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~  104 (210)
                      .+++.+|..|+||||+|+..|+.+++++|++. |++++..    |..|.||||+|+..|+.+++++|++.|++++..+..
T Consensus        97 ~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~g~~~~~~----d~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~~~~~  172 (222)
T 3ehr_A           97 VGVNGLDKAGSTALYWACHGGHKDIVEMLFTQPNIELNQQ----NKLGDTALHAAAWKGYADIVQLLLAKGARTDLRNIE  172 (222)
T ss_dssp             CCTTCCCTTSCCHHHHHHHTTCHHHHHHHTTSTTCCCCCC----CTTSCCHHHHHHHHTCHHHHHHHHHHTCCSCCCCTT
T ss_pred             CCccccCCCCCCHHHHHHHcCCHHHHHHHHcCCCCCcccc----CCCCCCHHHHHHHcCCHHHHHHHHHcCCCCccccCC
Confidence            45677899999999999999999999999998 9999988    999999999999999999999999999999999887


Q ss_pred             CCCChHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCCC
Q 028370          105 ACGWTPLHTAAKERKKEAVRFLIENGAFLPDDINDSRF  142 (210)
Q Consensus       105 ~~g~tpL~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~g  142 (210)
                        |.|||++|+..|+.++++.|+..|+..  ...+..+
T Consensus       173 --g~t~l~~A~~~~~~~~l~~l~~~~~~~--~~~~~~~  206 (222)
T 3ehr_A          173 --KKLAFDMATNAACASLLKKKQGTDAVR--TLSNAED  206 (222)
T ss_dssp             --SCCHHHHCCSHHHHHHHC------------------
T ss_pred             --CCCHHHHhcchhHHHHHHHHhccchhh--hccchhh
Confidence              999999999999999999999999944  5544443

>3jue_A Arfgap with coiled-coil, ANK repeat and PH domain containing protein 1; arfgap domain, zinc-binding module, GTPase activ metal-binding, nitration; 2.30A {Homo sapiens} PDB: 3t9k_A 4f1p_A

Probab=99.81  E-value=1.3e-19  Score=146.13  Aligned_cols=134  Identities=25%  Similarity=0.251  Sum_probs=99.1

Q ss_pred             chhHHHHHHhhHHHhhhhcccC--CCCChHHHHHHHcCCHHHHHHHHHCCCCccccccCCCCCCCcHHHHHHHCCcHHHH
Q 028370           11 GPFTLQRKASRKRFFRSVIDTD--DRGWTPLHIGARKGDIKLVKQLLDEGMDVNVAAWGPKSKGVTPLHLAAQGGHLEVM   88 (210)
Q Consensus        11 ~~~~~~~~~~~~~~~~~~~~~d--~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v   88 (210)
                      |.+..+.....  ...+++..|  ..|.||||+|+..|+.+++++|+++|++++..    |..|.||||+|+..|+.+++
T Consensus       211 g~~~~v~~LL~--~Gadvn~~~~~~~g~TpLh~Aa~~g~~~iv~~LL~~Gadvn~~----d~~G~TpLh~A~~~g~~~~v  284 (368)
T 3jue_A          211 PSLPTMADALA--HGADVNWVNGGQDNATPLIQATAANSLLACEFLLQNGANVNQA----DSAGRGPLHHATILGHTGLA  284 (368)
T ss_dssp             CCHHHHHHHHH--TTCCTTCCCTTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCC----CTTSCCHHHHHHHHTCHHHH
T ss_pred             CCHHHHHHHHH--cCCCCCccccccCCCCHHHHHHHCCCHHHHHHHHHcCCCCCCC----CCCCCCHHHHHHHcCcHHHH
Confidence            44444444333  234566677  88999999999999999999999999999988    99999999999999999999


Q ss_pred             HHHHHcCCCCCcccCCCCCChHHHHHHhcCCHHHHHHHHHcCCC-CCCCCCCCCCCCcccccccc
Q 028370           89 DVLLERGADIDARTKGACGWTPLHTAAKERKKEAVRFLIENGAF-LPDDINDSRFNPPLHYCPSL  152 (210)
Q Consensus        89 ~~Ll~~g~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~g~~-~~~~~~~~~g~t~l~~a~~~  152 (210)
                      ++|+++|++++..+..  |.||||+|+..|+.+++++|+..+.. ......+..+.|+++++...
T Consensus       285 ~~LL~~Gad~~~~d~~--G~TpL~~A~~~g~~~iv~lLl~~~~~~~~~~~~~~~~~t~l~i~~~~  347 (368)
T 3jue_A          285 CLFLKRGADLGARDSE--GRDPLTIAMETANADIVTLLRLAKMREAEAAQGQAGDETYLDIFRDF  347 (368)
T ss_dssp             HHHHHTTCCTTCCCTT--SCCHHHHHHHTTCHHHHHHHHHHHC----------------------
T ss_pred             HHHHHCcCCCCCcCCC--CCCHHHHHHHCCCHHHHHHHHHcCCCcccccccCCCCCCHHHHHHHH
Confidence            9999999999999887  99999999999999999999988742 12245566778888887643

>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system, signal sequence, ankyrin repeat, chromodomain, type I turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2 k.37.1.1 PDB: 3dep_A 1x32_A

Probab=99.81  E-value=3.4e-19  Score=130.20  Aligned_cols=115  Identities=30%  Similarity=0.377  Sum_probs=100.6

Q ss_pred             hhhhcccCCCCChHHHHHHHcCCHHHHHHHHHCCCCccccccCCC-CCCCcHHHHHHHCCcHHHHHHHHHcCCCCCcccC
Q 028370           25 FRSVIDTDDRGWTPLHIGARKGDIKLVKQLLDEGMDVNVAAWGPK-SKGVTPLHLAAQGGHLEVMDVLLERGADIDARTK  103 (210)
Q Consensus        25 ~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~-~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~  103 (210)
                      ..+++.+|..|+||||+|+..|+.+++++|+++|++++..    + ..|+||||+|+..|+.+++++|+++|++++..+.
T Consensus        66 ~~~~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~----~~~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~~d~  141 (183)
T 3deo_A           66 DRDVDAVDENGRTALLFVAGLGSDKCVRLLAEAGADLDHR----DMRGGLTALHMAAGYVRPEVVEALVELGADIEVEDE  141 (183)
T ss_dssp             TSCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCC----CSSSSCCHHHHHHHTTCHHHHHHHHHHTCCTTCCCT
T ss_pred             cCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCcC----CCCCCCCHHHHHHhcCcHHHHHHHHHcCCCCcCCCC
Confidence            3466788999999999999999999999999999999887    6 8899999999999999999999999999999887


Q ss_pred             CCCCChHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCCCCCcccccccchHHHHHHHHHhhhh
Q 028370          104 GACGWTPLHTAAKERKKEAVRFLIENGAFLPDDINDSRFNPPLHYCPSLEWAYEEMMRFQRES  166 (210)
Q Consensus       104 ~~~g~tpL~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~~~l~~~  166 (210)
                      .  |.||||+|+..++.                   ..+.+|+++|+  ..+..+++++|.+.
T Consensus       142 ~--g~tpl~~A~~~~~~-------------------~~~~~~l~~a~--~~~~~~i~~~L~~~  181 (183)
T 3deo_A          142 R--GLTALELAREILKT-------------------TPKGNPMQFGR--RIGLEKVINVLEGQ  181 (183)
T ss_dssp             T--SCCHHHHHHHHHHT-------------------CCCCSHHHHHH--HHHHHHHHHHHHTC
T ss_pred             C--CCCHHHHHHHhccC-------------------cccccHHHHHH--HcCHHHHHHHHHHh
Confidence            7  99999999874322                   23468999998  55678999988764

>3aaa_C Myotrophin, protein V-1; actin capping protein, barbed END capping, inhibition, prote binding, actin capping, actin-binding, cytoskeleton, ANK RE; 2.20A {Homo sapiens} PDB: 1myo_A 2kxp_C 2myo_A

Probab=99.80  E-value=1.2e-19  Score=124.02  Aligned_cols=104  Identities=28%  Similarity=0.421  Sum_probs=87.7

Q ss_pred             chhHHHHHHhhHHHhhhhcccCCCCChHHHHHHHcCCHHHHHHHHHCCCCccccccCCCCCCCcHHHHHHHCCcHHHHHH
Q 028370           11 GPFTLQRKASRKRFFRSVIDTDDRGWTPLHIGARKGDIKLVKQLLDEGMDVNVAAWGPKSKGVTPLHLAAQGGHLEVMDV   90 (210)
Q Consensus        11 ~~~~~~~~~~~~~~~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~   90 (210)
                      |....+......  ..+++.+|..|+||||+|+..|+.+++++|++.|++++..    |..|+||||+|+..++.+++++
T Consensus        18 ~~~~~v~~ll~~--~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~----d~~g~tpL~~A~~~~~~~~v~~   91 (123)
T 3aaa_C           18 GDLDEVKDYVAK--GEDVNRTLEGGRKPLHYAADCGQLEILEFLLLKGADINAP----DKHHITPLLSAVYEGHVSCVKL   91 (123)
T ss_dssp             TCHHHHHHHHHT--TCCTTSCCTTSSCHHHHHHHTTCHHHHHHHHTTTCCTTCC----CTTSCCHHHHHHHHTCHHHHHH
T ss_pred             CCHHHHHHHHHc--CCCcCccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCcC----CCCCCCHHHHHHHcCCHHHHHH
Confidence            444444443332  2457889999999999999999999999999999999988    8999999999999999999999


Q ss_pred             HHHcCCCCCcccCCCCCChHHHHHHhcCCHHH
Q 028370           91 LLERGADIDARTKGACGWTPLHTAAKERKKEA  122 (210)
Q Consensus        91 Ll~~g~~~~~~~~~~~g~tpL~~A~~~g~~~~  122 (210)
                      |+++|++++..+..  |.||||+|+..+..++
T Consensus        92 Ll~~ga~~~~~~~~--g~t~l~~A~~~~~~~l  121 (123)
T 3aaa_C           92 LLSKGADKTVKGPD--GLTAFEATDNQAIKAL  121 (123)
T ss_dssp             HHHTTCCTTCCCTT--SCCHHHHCCCHHHHHH
T ss_pred             HHHcCCCCCCcCCC--CCCHHHHhCCHHHHHH
Confidence            99999999998877  9999999955444433

>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A

Probab=99.80  E-value=4.6e-19  Score=135.39  Aligned_cols=100  Identities=32%  Similarity=0.388  Sum_probs=90.8

Q ss_pred             hhhcccCCCCChHHHHHHHcCCHHHHHHHHHCCCCccccccCCC-CCCCcHHHHHHHCCcHHHHHHHHHcCCCCCcccCC
Q 028370           26 RSVIDTDDRGWTPLHIGARKGDIKLVKQLLDEGMDVNVAAWGPK-SKGVTPLHLAAQGGHLEVMDVLLERGADIDARTKG  104 (210)
Q Consensus        26 ~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~-~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~  104 (210)
                      .+++.+|..|+||||+|+..|+.+++++|+++|++++..    + ..|.||||+|+..|+.+++++|+++|++++..+..
T Consensus        68 ~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~----~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~d~~  143 (244)
T 3ui2_A           68 RDVDAVDENGRTALLFVAGLGSDKCVRLLAEAGADLDHR----DMRGGLTALHMAAGYVRPEVVEALVELGADIEVEDER  143 (244)
T ss_dssp             CCTTCBCTTSCBHHHHHHHHTCHHHHHHHHHTTCCTTCC----CSSSCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTT
T ss_pred             CCCCCcCCCCCCHHHHHHHCCCHHHHHHHHHcCCCCCcC----CCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCCCCC
Confidence            456789999999999999999999999999999999887    6 78999999999999999999999999999988877


Q ss_pred             CCCChHHHHHH----------------hcCCHHHHHHHHHcCC
Q 028370          105 ACGWTPLHTAA----------------KERKKEAVRFLIENGA  131 (210)
Q Consensus       105 ~~g~tpL~~A~----------------~~g~~~~v~~Ll~~g~  131 (210)
                        |.||||+|+                ..|+.+++++|++++.
T Consensus       144 --g~t~l~~A~~~~~~~~~~~~l~~a~~~g~~~iv~~L~~~~~  184 (244)
T 3ui2_A          144 --GLTALELAREILKTTPKGNPMQFGRRIGLEKVINVLEGQVF  184 (244)
T ss_dssp             --CCCHHHHHHHHHTTCCCSSHHHHHHHHHHHHHHHHHHHHHE
T ss_pred             --CCcHHHHHHHHHhccCCCCHHHHHHHcChHHHHHHHHHhcc
Confidence              888888887                6688999999998643

>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics, PSI, protein structure initiative; 2.80A {Legionella pneumophila} SCOP: a.118.24.1

Probab=99.80  E-value=9.4e-22  Score=159.15  Aligned_cols=131  Identities=13%  Similarity=0.097  Sum_probs=86.6

Q ss_pred             hhcccCCCCChHHHHHHHcCCHHHHHHHHHCCCCccccccCCCCCCCcHHHHHHHCCcHHHHHHHHHcCCCC---CcccC
Q 028370           27 SVIDTDDRGWTPLHIGARKGDIKLVKQLLDEGMDVNVAAWGPKSKGVTPLHLAAQGGHLEVMDVLLERGADI---DARTK  103 (210)
Q Consensus        27 ~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~---~~~~~  103 (210)
                      .+...+.++.||||+|++.|+.+++++|++.|+..... ...+..|.||||+|+..|+.++|++|+++|+++   +....
T Consensus        84 ~l~~~g~~~~T~Lh~Aa~~G~~e~v~~Ll~~ga~~~~~-~~~~~~~~tpL~~Aa~~G~~eiv~~Ll~~gad~~~~~i~~~  162 (376)
T 2aja_A           84 DAHKKGIKSEVICFVAAITGCSSALDTLCLLLTSDEIV-KVIQAENYQAFRLAAENGHLHVLNRLCELAPTEIMAMIQAE  162 (376)
T ss_dssp             HHHHHTCCHHHHHHHHHHHCCHHHHHHHTTC--CCSSC-C--CHHHHHHHHHHHHTTCHHHHHHHHHSCTTTHHHHHSHH
T ss_pred             HHHHcCCCcCCHHHHHHHcCCHHHHHHHHHcCCcHHHH-HHhccCCCCHHHHHHHcCCHHHHHHHHhCCCCccccccCCC
Confidence            34445666778888888888888888888877622110 001445667888888888888888888887652   22222


Q ss_pred             CCCCChHHHHHHhcCCHHHHHHHHHcCCCCCCCC--CCCCCCCcccccc-cchHHHHHHHHHhhh
Q 028370          104 GACGWTPLHTAAKERKKEAVRFLIENGAFLPDDI--NDSRFNPPLHYCP-SLEWAYEEMMRFQRE  165 (210)
Q Consensus       104 ~~~g~tpL~~A~~~g~~~~v~~Ll~~g~~~~~~~--~~~~g~t~l~~a~-~~~~~~~~~~~~l~~  165 (210)
                         +.||||+|+..|+.+++++|+++|+++  ..  .|..|.||||+|+ ..+.  .+++++|.+
T Consensus       163 ---~~TpLh~Aa~~G~~eiv~~Ll~~ga~~--~~~~~d~~g~TpL~~Aa~~~G~--~eiv~~Ll~  220 (376)
T 2aja_A          163 ---NYHAFRLAAENGHLHVLNRLCELAPTE--ATAMIQAENYYAFRWAAVGRGH--HNVINFLLD  220 (376)
T ss_dssp             ---HHHHHHHHHHTTCHHHHHHHHHSCGGG--HHHHHHHHHHHHHHHHHSTTCC--HHHHHHHTT
T ss_pred             ---CCCHHHHHHHCCCHHHHHHHHHcCCcc--chhccCCCCCCHHHHHHHHCCC--HHHHHHHHh
Confidence               267888888888888888888888754  33  5666778888877 6543  567776665

>3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat, helix, extended loop, four repeat, PR ANK repeat, disease mutation, metal-binding; 2.00A {Homo sapiens} SCOP: k.37.1.1

Probab=99.79  E-value=6.4e-20  Score=127.76  Aligned_cols=101  Identities=31%  Similarity=0.440  Sum_probs=90.0

Q ss_pred             hhhhcccCCCCChHHHHHHHcCCHHHHHHHHHCCCCccccccCCCCCCCcHHHHHHHCCcHHHHHHHHHcCCCCCcccCC
Q 028370           25 FRSVIDTDDRGWTPLHIGARKGDIKLVKQLLDEGMDVNVAAWGPKSKGVTPLHLAAQGGHLEVMDVLLERGADIDARTKG  104 (210)
Q Consensus        25 ~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~  104 (210)
                      ..+++.+|..|.||||+|+..|+.+++++|+++|++++..    +..|.||||+|+..|+.+++++|+++|++++..+..
T Consensus        33 g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~----~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~  108 (137)
T 3c5r_A           33 GSDPNVKDHAGWTPLHEACNHGHLKVVELLLQHKALVNTT----GYQNDSPLHDAAKNGHVDIVKLLLSYGASRNAVNIF  108 (137)
T ss_dssp             TCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCC----CGGGCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTT
T ss_pred             CCCCCcCCCCCCCHHHHHHHcCCHHHHHHHHHcCCcccCc----CCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCCCCC
Confidence            3456778999999999999999999999999999999988    899999999999999999999999999999998887


Q ss_pred             CCCChHHHHHHhcCCHHHHHHHHHcCC
Q 028370          105 ACGWTPLHTAAKERKKEAVRFLIENGA  131 (210)
Q Consensus       105 ~~g~tpL~~A~~~g~~~~v~~Ll~~g~  131 (210)
                        |.|||++|+..+..+++++|.+.+.
T Consensus       109 --g~tpl~~A~~~~~~~~l~~l~~~~~  133 (137)
T 3c5r_A          109 --GLRPVDYTDDESMKSLLLLPEKNES  133 (137)
T ss_dssp             --SCCGGGGCCCHHHHHHHSCC-----
T ss_pred             --CCCHHHHHhhccHHHHHhhcccccc
Confidence              9999999999999999888877655

>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics, PSI, protein structure initiative; 2.80A {Legionella pneumophila} SCOP: a.118.24.1

Probab=99.78  E-value=4.2e-21  Score=155.33  Aligned_cols=139  Identities=12%  Similarity=0.142  Sum_probs=109.9

Q ss_pred             chhHHHHHHhhHHHhhhhc----------ccCCCCChHHHHHHHcCCHHHHHHHHHCCCCc---cccccCCCCCCCcHHH
Q 028370           11 GPFTLQRKASRKRFFRSVI----------DTDDRGWTPLHIGARKGDIKLVKQLLDEGMDV---NVAAWGPKSKGVTPLH   77 (210)
Q Consensus        11 ~~~~~~~~~~~~~~~~~~~----------~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~---~~~~~~~~~~g~t~L~   77 (210)
                      +|+..+.+.+....++.+.          ..|..|.||||+|+++|+.+++++|+++|+++   +..    +.+ .||||
T Consensus        94 T~Lh~Aa~~G~~e~v~~Ll~~ga~~~~~~~~~~~~~tpL~~Aa~~G~~eiv~~Ll~~gad~~~~~i~----~~~-~TpLh  168 (376)
T 2aja_A           94 VICFVAAITGCSSALDTLCLLLTSDEIVKVIQAENYQAFRLAAENGHLHVLNRLCELAPTEIMAMIQ----AEN-YHAFR  168 (376)
T ss_dssp             HHHHHHHHHCCHHHHHHHTTC--CCSSCC--CHHHHHHHHHHHHTTCHHHHHHHHHSCTTTHHHHHS----HHH-HHHHH
T ss_pred             CHHHHHHHcCCHHHHHHHHHcCCcHHHHHHhccCCCCHHHHHHHcCCHHHHHHHHhCCCCccccccC----CCC-CCHHH
Confidence            5555555555554444332          33456889999999999999999999999763   222    222 89999


Q ss_pred             HHHHCCcHHHHHHHHHcCCCCCc--ccCCCCCChHHHHHH-hcCCHHHHHHHHHcCCCCCCCCCCCCCCCcccccccchH
Q 028370           78 LAAQGGHLEVMDVLLERGADIDA--RTKGACGWTPLHTAA-KERKKEAVRFLIENGAFLPDDINDSRFNPPLHYCPSLEW  154 (210)
Q Consensus        78 ~A~~~~~~~~v~~Ll~~g~~~~~--~~~~~~g~tpL~~A~-~~g~~~~v~~Ll~~g~~~~~~~~~~~g~t~l~~a~~~~~  154 (210)
                      +|+..|+.+++++|+++|++++.  .+..  |.||||+|+ ..|+.++|++|++.|+         .|.||+++|+..+ 
T Consensus       169 ~Aa~~G~~eiv~~Ll~~ga~~~~~~~d~~--g~TpL~~Aa~~~G~~eiv~~Ll~~ga---------~~~taL~~Aa~~g-  236 (376)
T 2aja_A          169 LAAENGHLHVLNRLCELAPTEATAMIQAE--NYYAFRWAAVGRGHHNVINFLLDCPV---------MLAYAEIHEFEYG-  236 (376)
T ss_dssp             HHHHTTCHHHHHHHHHSCGGGHHHHHHHH--HHHHHHHHHSTTCCHHHHHHHTTSHH---------HHHHHHHCTTTTT-
T ss_pred             HHHHCCCHHHHHHHHHcCCccchhccCCC--CCCHHHHHHHHCCCHHHHHHHHhCCC---------ccchHHHHHHHCC-
Confidence            99999999999999999999876  6666  899999999 9999999999999875         2789999999554 


Q ss_pred             HHHHHHHHhhhhh
Q 028370          155 AYEEMMRFQRESF  167 (210)
Q Consensus       155 ~~~~~~~~l~~~~  167 (210)
                       ..+++++|.+..
T Consensus       237 -~~evv~lL~~~g  248 (376)
T 2aja_A          237 -EKYVNPFIARHV  248 (376)
T ss_dssp             -TTTHHHHHHHHH
T ss_pred             -CHHHHHHHHhcC
Confidence             467888887764

>2zgd_A 3 repeat synthetic ankyrin; ankyrin repeat, hydroxylated, de novo protein; 1.90A {Synthetic} PDB: 2zgg_A 2xen_A

Probab=99.76  E-value=7.8e-19  Score=117.89  Aligned_cols=89  Identities=29%  Similarity=0.372  Sum_probs=80.3

Q ss_pred             CCCCCcHHHHHHHCCcHHHHHHHHHcCCCCCcccCCCCCChHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCCCCCcccc
Q 028370           69 KSKGVTPLHLAAQGGHLEVMDVLLERGADIDARTKGACGWTPLHTAAKERKKEAVRFLIENGAFLPDDINDSRFNPPLHY  148 (210)
Q Consensus        69 ~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~g~t~l~~  148 (210)
                      +.+|.|+||+|+..|+.+++++|++.|++++..+..  |.||||+|+..|+.+++++|+++|+++  +.+|..|.|||++
T Consensus        21 ~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~i~~~d~~--g~tpLh~A~~~~~~~~v~~Ll~~ga~~--~~~d~~g~tpl~~   96 (110)
T 2zgd_A           21 GSDLGKKLLEAARAGQDDEVRILMANGADVAAKDKN--GSTPLHLAARNGHLEVVKLLLEAGADV--XAQDKFGKTAFDI   96 (110)
T ss_dssp             -CCHHHHHHHHHHHTCHHHHHHHHHTTCCTTCCCTT--CCCHHHHHHHTTCHHHHHHHHHTTCCT--TCCCTTSCCHHHH
T ss_pred             CCccchHHHHHHHcCCHHHHHHHHHcCCCCCccCCC--CCCHHHHHHHcCCHHHHHHHHHcCCCc--cccccCCCcHHHH
Confidence            778999999999999999999999999999988877  999999999999999999999999965  8899999999999


Q ss_pred             cccchHHHHHHHHHh
Q 028370          149 CPSLEWAYEEMMRFQ  163 (210)
Q Consensus       149 a~~~~~~~~~~~~~l  163 (210)
                      |+..  +..+++++|
T Consensus        97 A~~~--~~~~~~~~L  109 (110)
T 2zgd_A           97 SIDN--GNEDLAEIL  109 (110)
T ss_dssp             HHHH--TCHHHHHHH
T ss_pred             HHHc--CCHHHHHHh
Confidence            9944  456777765

>2l6b_A NR1C; ankyrin, consensus, repeat protein, ising model, DE NOV; NMR {Escherichia coli}

Probab=99.76  E-value=1.3e-18  Score=117.48  Aligned_cols=92  Identities=38%  Similarity=0.564  Sum_probs=84.4

Q ss_pred             CCCCCcHHHHHHHCCcHHHHHHHHHcCCCCCcccCCCCCChHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCCCCCcccc
Q 028370           69 KSKGVTPLHLAAQGGHLEVMDVLLERGADIDARTKGACGWTPLHTAAKERKKEAVRFLIENGAFLPDDINDSRFNPPLHY  148 (210)
Q Consensus        69 ~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~g~t~l~~  148 (210)
                      |..|+||||+|+..|+.+++++|++.|++++..+..  |.||||+|+..|+.+++++|+++|+++  +.+|..|.|||++
T Consensus         6 d~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~d~~--g~t~L~~A~~~~~~~~~~~Ll~~g~~~--~~~d~~g~tpl~~   81 (115)
T 2l6b_A            6 SKDGNTPLHNAAKNGHAEEVKKLLSKGADVNARSKD--GNTPLHLAAKNGHAEIVKLLLAKGADV--NARSKDGNTPEHL   81 (115)
T ss_dssp             SCSSCCHHHHHHHHTCHHHHHHHTTTTCCSSCCCSS--SCCTTHHHHTTTCHHHHHHHTTTTCCT--TCCCTTCCCTTHH
T ss_pred             CCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCcCCC--CCCHHHHHHHcCcHHHHHHHHHcCCCC--cccCCCCCCHHHH
Confidence            889999999999999999999999999999988877  999999999999999999999999966  8899999999999


Q ss_pred             cccchHHHHHHHHHhhhh
Q 028370          149 CPSLEWAYEEMMRFQRES  166 (210)
Q Consensus       149 a~~~~~~~~~~~~~l~~~  166 (210)
                      |+..+  ..+++++|.+.
T Consensus        82 A~~~~--~~~~~~~Ll~~   97 (115)
T 2l6b_A           82 AKKNG--HHEIVKLLDAK   97 (115)
T ss_dssp             HHTTT--CHHHHHHHHTT
T ss_pred             HHHCC--CHHHHHHHHHc
Confidence            99554  57888888765

>1sw6_A Regulatory protein SWI6; transcription regulation, ankyrin repeats, cell-cycle; 2.10A {Saccharomyces cerevisiae} SCOP: d.211.1.1

Probab=99.75  E-value=2.5e-19  Score=142.46  Aligned_cols=122  Identities=16%  Similarity=0.153  Sum_probs=102.8

Q ss_pred             HHHHHHHcCCHHHHHHHHHCCCCccc-cccCCCCCCCcHHHHHHHCCcHHHHHHHHHcCCCCCcccCCCCCChHHHHHHh
Q 028370           38 PLHIGARKGDIKLVKQLLDEGMDVNV-AAWGPKSKGVTPLHLAAQGGHLEVMDVLLERGADIDARTKGACGWTPLHTAAK  116 (210)
Q Consensus        38 ~L~~A~~~g~~~~v~~Ll~~g~~~~~-~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~~g~tpL~~A~~  116 (210)
                      .+|.|+..+..++++.|++.|++++. .    +..|+||||+|+..|+.++|++|++.|++++..+..  |.||||+|+.
T Consensus       100 ~~~~a~~~~~~~~~~~l~~~g~dvn~~~----d~~g~TpLh~Aa~~g~~~~v~~Ll~~Gad~n~~d~~--g~TpLh~A~~  173 (327)
T 1sw6_A          100 QQHVSFDSLLQEVNDAFPNTQLNLNIPV----DEHGNTPLHWLTSIANLELVKHLVKHGSNRLYGDNM--GESCLVKAVK  173 (327)
T ss_dssp             ----CHHHHHHHHHHHCTTSCCCSCSCC----STTCCCHHHHHHHTTCHHHHHHHHHTTCCTTBCCTT--CCCHHHHHHH
T ss_pred             hhHHHHHhhHHHHHHHHHhcCCCccccc----CCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCcCCC--CCCHHHHHHH
Confidence            35778888888999999999999998 6    899999999999999999999999999999998887  9999999999


Q ss_pred             cCC---HHHHHHHHHcC-CCCCCCCCCCCCCCcccccccch--HHHHHHHHHhhhhh
Q 028370          117 ERK---KEAVRFLIENG-AFLPDDINDSRFNPPLHYCPSLE--WAYEEMMRFQRESF  167 (210)
Q Consensus       117 ~g~---~~~v~~Ll~~g-~~~~~~~~~~~g~t~l~~a~~~~--~~~~~~~~~l~~~~  167 (210)
                      .|+   .++++.|++.+ ++  .+.+|..|.||||+|+...  .+..++++++.+..
T Consensus       174 ~g~~~~~~~~~~ll~~~~~~--~~~~d~~g~tpLh~A~~~~~~~g~~~~v~~Ll~~~  228 (327)
T 1sw6_A          174 SVNNYDSGTFEALLDYLYPC--LILEDSMNRTILHHIIITSGMTGCSAAAKYYLDIL  228 (327)
T ss_dssp             SSHHHHTTCHHHHHHHHGGG--GGEECTTCCCHHHHHHHHHTSTTCHHHHHHHHHHH
T ss_pred             hcccccHHHHHHHHHhhhcc--ccCCCCCCCCHHHHHHHHccccccHHHHHHHHHHH
Confidence            998   68888888887 53  4889999999999998521  34467777777653

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	210
d2ajaa1	346	a.118.24.1 (A:3-348) Hypothetical protein LPG2416	9e-26
d2ajaa1	346	a.118.24.1 (A:3-348) Hypothetical protein LPG2416	4e-17
d2ajaa1	346	a.118.24.1 (A:3-348) Hypothetical protein LPG2416	1e-12
d2ajaa1	346	a.118.24.1 (A:3-348) Hypothetical protein LPG2416	5e-12
d2ajaa1	346	a.118.24.1 (A:3-348) Hypothetical protein LPG2416	2e-09
d1n11a_	408	d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [Ta	4e-25
d1n11a_	408	d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [Ta	8e-18
d1n11a_	408	d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [Ta	2e-17
d1n11a_	408	d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [Ta	2e-16
d1n11a_	408	d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [Ta	2e-15
d1n11a_	408	d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [Ta	3e-15
d1n11a_	408	d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [Ta	3e-13
d1n11a_	408	d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [Ta	5e-12
d1wdya_	285	d.211.1.1 (A:) RNase L, 2-5a-dependent ribonucleas	5e-18
d1wdya_	285	d.211.1.1 (A:) RNase L, 2-5a-dependent ribonucleas	2e-16
d1wdya_	285	d.211.1.1 (A:) RNase L, 2-5a-dependent ribonucleas	9e-12
d1wdya_	285	d.211.1.1 (A:) RNase L, 2-5a-dependent ribonucleas	2e-11
d1wdya_	285	d.211.1.1 (A:) RNase L, 2-5a-dependent ribonucleas	7e-10
d1wdya_	285	d.211.1.1 (A:) RNase L, 2-5a-dependent ribonucleas	1e-07
d1s70b_	291	d.211.1.1 (B:) Myosin phosphatase targeting subuni	1e-17
d1s70b_	291	d.211.1.1 (B:) Myosin phosphatase targeting subuni	4e-11
d1s70b_	291	d.211.1.1 (B:) Myosin phosphatase targeting subuni	7e-08
d1s70b_	291	d.211.1.1 (B:) Myosin phosphatase targeting subuni	2e-06
d2fo1e1	277	d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis ele	4e-16
d2fo1e1	277	d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis ele	4e-09
d2fo1e1	277	d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis ele	3e-06
d2fo1e1	277	d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis ele	7e-04
d1uoha_	223	d.211.1.1 (A:) 26S proteasome non-ATPase regulator	1e-14
d1uoha_	223	d.211.1.1 (A:) 26S proteasome non-ATPase regulator	1e-11
d1uoha_	223	d.211.1.1 (A:) 26S proteasome non-ATPase regulator	2e-08
d1uoha_	223	d.211.1.1 (A:) 26S proteasome non-ATPase regulator	4e-04
d1oy3d_	255	d.211.1.1 (D:) Transcription factor inhibitor I-ka	4e-14
d1oy3d_	255	d.211.1.1 (D:) Transcription factor inhibitor I-ka	2e-13
d1oy3d_	255	d.211.1.1 (D:) Transcription factor inhibitor I-ka	6e-11
d1oy3d_	255	d.211.1.1 (D:) Transcription factor inhibitor I-ka	6e-11
d1oy3d_	255	d.211.1.1 (D:) Transcription factor inhibitor I-ka	4e-06
d1oy3d_	255	d.211.1.1 (D:) Transcription factor inhibitor I-ka	0.002
d1oy3d_	255	d.211.1.1 (D:) Transcription factor inhibitor I-ka	0.002
d1sw6a_	301	d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker	6e-14
d1sw6a_	301	d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker	5e-12
d1sw6a_	301	d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker	8e-11
d1sw6a_	301	d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker	6e-09
d1dcqa1	154	d.211.1.1 (A:369-522) Pyk2-associated protein beta	2e-13
d1dcqa1	154	d.211.1.1 (A:369-522) Pyk2-associated protein beta	2e-08
d1ixva_	229	d.211.1.1 (A:) 26S proteasome non-ATPase regulator	2e-11
d1ixva_	229	d.211.1.1 (A:) 26S proteasome non-ATPase regulator	1e-09
d1ixva_	229	d.211.1.1 (A:) 26S proteasome non-ATPase regulator	2e-08
d1ixva_	229	d.211.1.1 (A:) 26S proteasome non-ATPase regulator	2e-07
d1ixva_	229	d.211.1.1 (A:) 26S proteasome non-ATPase regulator	0.001
d1ot8a_	209	d.211.1.1 (A:) Neurogenic locus notch receptor dom	7e-11
d1ot8a_	209	d.211.1.1 (A:) Neurogenic locus notch receptor dom	2e-07
d1ot8a_	209	d.211.1.1 (A:) Neurogenic locus notch receptor dom	1e-05
d1ot8a_	209	d.211.1.1 (A:) Neurogenic locus notch receptor dom	0.004
d1k1aa_	228	d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId:	1e-10
d1k1aa_	228	d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId:	7e-08
d1k1aa_	228	d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId:	1e-06
d1k1aa_	228	d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId:	2e-04
d1iknd_	221	d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapien	2e-08
d1iknd_	221	d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapien	4e-08
d1iknd_	221	d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapien	1e-07
d1iknd_	221	d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapien	1e-04
d1iknd_	221	d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapien	4e-04
d1iknd_	221	d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapien	0.003
d1ycsb1	130	d.211.1.1 (B:327-456) 53BP2 {Human (Homo sapiens)	2e-08
d1ycsb1	130	d.211.1.1 (B:327-456) 53BP2 {Human (Homo sapiens)	2e-04
d1ycsb1	130	d.211.1.1 (B:327-456) 53BP2 {Human (Homo sapiens)	8e-04
d1ihba_	156	d.211.1.1 (A:) p18ink4C(ink6) {Human (Homo sapiens	6e-06
d1ihba_	156	d.211.1.1 (A:) p18ink4C(ink6) {Human (Homo sapiens	1e-04
d1ihba_	156	d.211.1.1 (A:) p18ink4C(ink6) {Human (Homo sapiens	0.001
d1ihba_	156	d.211.1.1 (A:) p18ink4C(ink6) {Human (Homo sapiens	0.002
d1awcb_	153	d.211.1.1 (B:) GA bindinig protein (GABP) beta 1 {	1e-05
d1awcb_	153	d.211.1.1 (B:) GA bindinig protein (GABP) beta 1 {	6e-04
d1awcb_	153	d.211.1.1 (B:) GA bindinig protein (GABP) beta 1 {	9e-04
d1awcb_	153	d.211.1.1 (B:) GA bindinig protein (GABP) beta 1 {	0.001
d1bi7b_	125	d.211.1.1 (B:) Cell cycle inhibitor p16ink4A {Huma	4e-04
d1bd8a_	156	d.211.1.1 (A:) Cell cycle inhibitor p19ink4D {Huma	0.001
d1bd8a_	156	d.211.1.1 (A:) Cell cycle inhibitor p19ink4D {Huma	0.002
d1bd8a_	156	d.211.1.1 (A:) Cell cycle inhibitor p19ink4D {Huma	0.004

>d2ajaa1 a.118.24.1 (A:3-348) Hypothetical protein LPG2416 {Legionella pneumophila [TaxId: 446]} Length = 346

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Pseudo ankyrin repeat-like
family: Pseudo ankyrin repeat
domain: Hypothetical protein LPG2416
species: Legionella pneumophila [TaxId: 446]

 Score =   99 bits (248), Expect = 9e-26
 Identities = 22/144 (15%), Positives = 43/144 (29%), Gaps = 8/144 (5%)

Query: 22  KRFFRSVIDTDDRGWTPLHIGARKGD---IKLVKQLLDEGMDVNVAAWGPKSKGVTPLHL 78
           K+ +        +      + A  G    +  +  LL     V V     +++      L
Sbjct: 77  KQLWSDAHKKGIKSEVICFVAAITGCSSALDTLCLLLTSDEIVKVI----QAENYQAFRL 132

Query: 79  AAQGGHLEVMDVLLERGADIDARTKGACGWTPLHTAAKERKKEAVRFLIENGAFLPDDIN 138
           AA+ GHL V++ L E           A  +     AA+      +  L E        + 
Sbjct: 133 AAENGHLHVLNRLCELAPTEIMAMIQAENYHAFRLAAENGHLHVLNRLCELAPTEATAMI 192

Query: 139 DSRFNPPLHYCPSLEWAYEEMMRF 162
            +       +       +  ++ F
Sbjct: 193 QAENYYAFRWAAV-GRGHHNVINF 215

>d2ajaa1 a.118.24.1 (A:3-348) Hypothetical protein LPG2416 {Legionella pneumophila [TaxId: 446]} Length = 346

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Pseudo ankyrin repeat-like
family: Pseudo ankyrin repeat
domain: Hypothetical protein LPG2416
species: Legionella pneumophila [TaxId: 446]

 Score = 76.1 bits (186), Expect = 4e-17
 Identities = 19/142 (13%), Positives = 42/142 (29%), Gaps = 3/142 (2%)

Query: 31  TDDRGWTPLHIGARKGDIKLVKQLLDEGMDVNVAAWGPKSKGVTPLHLAAQGGHLEVMDV 90
                +    + A  G + ++ +L +      +A    +++      LAA+ GHL V++ 
Sbjct: 122 IQAENYQAFRLAAENGHLHVLNRLCELAPTEIMA--MIQAENYHAFRLAAENGHLHVLNR 179

Query: 91  LLERGADI-DARTKGACGWTPLHTAAKERKKEAVRFLIENGAFLPDDINDSRFNPPLHYC 149
           L E       A  +    +     A        + FL++    L             +  
Sbjct: 180 LCELAPTEATAMIQAENYYAFRWAAVGRGHHNVINFLLDCPVMLAYAEIHEFEYGEKYVN 239

Query: 150 PSLEWAYEEMMRFQRESFSAGE 171
           P +      +         +  
Sbjct: 240 PFIARHVNRLKEMHDAFKLSNP 261

>d2ajaa1 a.118.24.1 (A:3-348) Hypothetical protein LPG2416 {Legionella pneumophila [TaxId: 446]} Length = 346

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Pseudo ankyrin repeat-like
family: Pseudo ankyrin repeat
domain: Hypothetical protein LPG2416
species: Legionella pneumophila [TaxId: 446]

 Score = 63.0 bits (152), Expect = 1e-12
 Identities = 19/131 (14%), Positives = 32/131 (24%), Gaps = 13/131 (9%)

Query: 31  TDDRGWTPLHIGARKGDIKLVKQLLDEGMDVNVA---AWGPKSKGVTPLHLAAQGGHLEV 87
             +  +        +G   ++  LLD  + +  A    +    K V P          E+
Sbjct: 193 QAENYYAFRWAAVGRGHHNVINFLLDCPVMLAYAEIHEFEYGEKYVNPFIARHVNRLKEM 252

Query: 88  MDVLLERGA-------DIDARTKGACGWTPLHTAAKERKKEAVRFLIENGA---FLPDDI 137
            D                    +G      L     E   + +RFL+         P   
Sbjct: 253 HDAFKLSNPDGVFDLVTKSECLQGFYMLRNLIRRNDEVLLDDIRFLLSIPGIKALAPTAT 312

Query: 138 NDSRFNPPLHY 148
                N  L  
Sbjct: 313 IPGDANELLRL 323

>d2ajaa1 a.118.24.1 (A:3-348) Hypothetical protein LPG2416 {Legionella pneumophila [TaxId: 446]} Length = 346

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Pseudo ankyrin repeat-like
family: Pseudo ankyrin repeat
domain: Hypothetical protein LPG2416
species: Legionella pneumophila [TaxId: 446]

 Score = 61.4 bits (148), Expect = 5e-12
 Identities = 11/99 (11%), Positives = 19/99 (19%), Gaps = 13/99 (13%)

Query: 35  GWTPLHIGARKGDIKLVKQLLDEGMDVNVAAWGPKSKGVTPLHLAAQGGHLEVMDVLLER 94
                 +    G   LV +                   +  L        L+ +  LL  
Sbjct: 252 MHDAFKLSNPDGVFDLVTKSECL----------QGFYMLRNLIRRNDEVLLDDIRFLLSI 301

Query: 95  GADIDARTKGAC---GWTPLHTAAKERKKEAVRFLIENG 130
                              L  A +   + A   L+   
Sbjct: 302 PGIKALAPTATIPGDANELLRLALRLGNQGACALLLSIP 340

>d2ajaa1 a.118.24.1 (A:3-348) Hypothetical protein LPG2416 {Legionella pneumophila [TaxId: 446]} Length = 346

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Pseudo ankyrin repeat-like
family: Pseudo ankyrin repeat
domain: Hypothetical protein LPG2416
species: Legionella pneumophila [TaxId: 446]

 Score = 54.5 bits (130), Expect = 2e-09
 Identities = 13/78 (16%), Positives = 23/78 (29%), Gaps = 2/78 (2%)

Query: 26  RSVIDTDDRGWTPLHIGARKGDIKLVKQLLDEGMDVNVAAWGPKSK-GVTPLHLAAQGGH 84
           +S           L     +  +  ++ LL       +A            L LA + G+
Sbjct: 270 KSECLQGFYMLRNLIRRNDEVLLDDIRFLLSIPGIKALAPTATIPGDANELLRLALRLGN 329

Query: 85  LEVMDVLLERGADIDART 102
                +LL     + A T
Sbjct: 330 QGACALLLSIP-SVLALT 346

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]} Length = 408

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 98.9 bits (245), Expect = 4e-25
 Identities = 39/126 (30%), Positives = 55/126 (43%), Gaps = 6/126 (4%)

Query: 37  TPLHIGARKGDIKLVKQLLDEGMDVNVAAWGPKSKGVTPLHLAAQGGHLEVMDVLLERGA 96
           TPLH+ +  G + +VK LL  G   NV       K  TPLH+AA+ GH EV   LL+  A
Sbjct: 2   TPLHVASFMGHLPIVKNLLQRGASPNV----SNVKVETPLHMAARAGHTEVAKYLLQNKA 57

Query: 97  DIDARTKGACGWTPLHTAAKERKKEAVRFLIENGAFLPDDINDSRFNPPLHYCPSLEWAY 156
            ++A+ K     TPLH AA+      V+ L+EN A              +          
Sbjct: 58  KVNAKAK--DDQTPLHCAARIGHTNMVKLLLENNANPNLATTAGHTPLHIAAREGHVETV 115

Query: 157 EEMMRF 162
             ++  
Sbjct: 116 LALLEK 121

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]} Length = 408

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 78.5 bits (192), Expect = 8e-18
 Identities = 29/125 (23%), Positives = 48/125 (38%), Gaps = 31/125 (24%)

Query: 31  TDDRGWTPLHIGARKGDIKLVKQLLDEGMDVNVAAWGPKS-------------------- 70
            +  G TPLH+ A++G + +   L+  G+ V+       +                    
Sbjct: 260 GNKSGLTPLHLVAQEGHVPVADVLIKHGVMVDATTRMGYTPLHVASHYGNIKLVKFLLQH 319

Query: 71  ---------KGVTPLHLAAQGGHLEVMDVLLERGADIDARTKGACGWTPLHTAAKERKKE 121
                     G +PLH AAQ GH +++ +LL+ GA  +  +    G TPL  A +     
Sbjct: 320 QADVNAKTKLGYSPLHQAAQQGHTDIVTLLLKNGASPNEVSSD--GTTPLAIAKRLGYIS 377

Query: 122 AVRFL 126
               L
Sbjct: 378 VTDVL 382

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]} Length = 408

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 77.7 bits (190), Expect = 2e-17
 Identities = 40/150 (26%), Positives = 55/150 (36%), Gaps = 37/150 (24%)

Query: 31  TDDRGWTPLHIGARKGDIKLVKQLLDEGMDVNVAAWGPKSKGVTPLHLAAQGGHLEVMDV 90
           ++ +  TPLH+ AR G  ++ K LL     VN  A        TPLH AA+ GH  ++ +
Sbjct: 29  SNVKVETPLHMAARAGHTEVAKYLLQNKAKVNAKA----KDDQTPLHCAARIGHTNMVKL 84

Query: 91  LLERGADIDAR-------------------------------TKGACGWTPLHTAAKERK 119
           LLE  A+ +                                      G+TPLH AAK  K
Sbjct: 85  LLENNANPNLATTAGHTPLHIAAREGHVETVLALLEKEASQACMTKKGFTPLHVAAKYGK 144

Query: 120 KEAVRFLIENGAFLPDDINDSRFNPPLHYC 149
                 L+E  A    +        PLH  
Sbjct: 145 VRVAELLLERDAHP--NAAGKNGLTPLHVA 172

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]} Length = 408

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 74.6 bits (182), Expect = 2e-16
 Identities = 48/180 (26%), Positives = 73/180 (40%), Gaps = 43/180 (23%)

Query: 32  DDRGWTPLHIGARKGDIKLVKQLLDEGMDVNVAAWGPKSKGVTPLHLAAQGGHLEVMDVL 91
             +G TPLH+ A++G  ++V  LL +  + N+        G+TPLHL AQ GH+ V DVL
Sbjct: 228 SVQGVTPLHLAAQEGHAEMVALLLSKQANGNLG----NKSGLTPLHLVAQEGHVPVADVL 283

Query: 92  LERGADIDART-------------------------------KGACGWTPLHTAAKERKK 120
           ++ G  +DA T                               K   G++PLH AA++   
Sbjct: 284 IKHGVMVDATTRMGYTPLHVASHYGNIKLVKFLLQHQADVNAKTKLGYSPLHQAAQQGHT 343

Query: 121 EAVRFLIENGAFLPDDIN--DSRFNPPLHYCPSLEWAYEEMMRFQRESFSAGETSYSSEK 178
           + V  L++NGA      N   S    PL    +    Y  +    +           S+K
Sbjct: 344 DIVTLLLKNGA----SPNEVSSDGTTPLAI--AKRLGYISVTDVLKVVTDETSFVLVSDK 397

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]} Length = 408

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 71.9 bits (175), Expect = 2e-15
 Identities = 36/122 (29%), Positives = 60/122 (49%), Gaps = 8/122 (6%)

Query: 28  VIDTDDRGWTPLHIGARKGDIKLVKQLLDEGMDVNVAAWGPKSKGVTPLHLAAQGGHLEV 87
                 +G+TPLH+ A+ G +++ + LL+     N A       G+TPLH+A    +L++
Sbjct: 125 QACMTKKGFTPLHVAAKYGKVRVAELLLERDAHPNAAG----KNGLTPLHVAVHHNNLDI 180

Query: 88  MDVLLERGADIDARTKGACGWTPLHTAAKERKKEAVRFLIENGAFLPDDINDSRFNPPLH 147
           + +LL RG    +      G+TPLH AAK+ + E  R L++       +    +   PLH
Sbjct: 181 VKLLLPRGGSPHSPAW--NGYTPLHIAAKQNQVEVARSLLQY--GGSANAESVQGVTPLH 236

Query: 148 YC 149
             
Sbjct: 237 LA 238

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]} Length = 408

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 71.2 bits (173), Expect = 3e-15
 Identities = 42/159 (26%), Positives = 55/159 (34%), Gaps = 33/159 (20%)

Query: 31  TDDRGWTPLHIGARKGDIKLVKQLLDEGMDVNVAAWGPK--------------------- 69
                 TPLH  AR G   +VK LL+   + N+A                          
Sbjct: 62  KAKDDQTPLHCAARIGHTNMVKLLLENNANPNLATTAGHTPLHIAAREGHVETVLALLEK 121

Query: 70  --------SKGVTPLHLAAQGGHLEVMDVLLERGADIDARTKGACGWTPLHTAAKERKKE 121
                    KG TPLH+AA+ G + V ++LLER A  +A  K   G TPLH A      +
Sbjct: 122 EASQACMTKKGFTPLHVAAKYGKVRVAELLLERDAHPNAAGKN--GLTPLHVAVHHNNLD 179

Query: 122 AVRFLIENGAFLPDDINDSRFNPPLHYCPSLEWAYEEMM 160
            V+ L+  G              PLH             
Sbjct: 180 IVKLLLPRGGSP--HSPAWNGYTPLHIAAKQNQVEVARS 216

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]} Length = 408

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 65.4 bits (158), Expect = 3e-13
 Identities = 23/76 (30%), Positives = 36/76 (47%), Gaps = 7/76 (9%)

Query: 31  TDDRGWTPLHIGARKGDIKLVKQLLDEGMDVNVAAWGPKSKGVTPLHLAAQGGHLEVMDV 90
               G++PLH  A++G   +V  LL  G   N  +    S G TPL +A + G++ V DV
Sbjct: 326 KTKLGYSPLHQAAQQGHTDIVTLLLKNGASPNEVS----SDGTTPLAIAKRLGYISVTDV 381

Query: 91  L---LERGADIDARTK 103
           L    +  + +    K
Sbjct: 382 LKVVTDETSFVLVSDK 397

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]} Length = 408

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 61.9 bits (149), Expect = 5e-12
 Identities = 42/130 (32%), Positives = 60/130 (46%), Gaps = 8/130 (6%)

Query: 27  SVIDTDDRGWTPLHIGARKGDIKLVKQLLDEGMDVNVAAWGPKSKGVTPLHLAAQGGHLE 86
           S       G+TPLHI A++  +++ + LL  G            +GVTPLHLAAQ GH E
Sbjct: 190 SPHSPAWNGYTPLHIAAKQNQVEVARSLLQYGGSA----NAESVQGVTPLHLAAQEGHAE 245

Query: 87  VMDVLLERGADIDARTKGACGWTPLHTAAKERKKEAVRFLIENGAFLPDDINDSRFNPPL 146
           ++ +LL + A+ +   K   G TPLH  A+E        LI++G  +  D        PL
Sbjct: 246 MVALLLSKQANGNLGNK--SGLTPLHLVAQEGHVPVADVLIKHGVMV--DATTRMGYTPL 301

Query: 147 HYCPSLEWAY 156
           H         
Sbjct: 302 HVASHYGNIK 311

>d1wdya_ d.211.1.1 (A:) RNase L, 2-5a-dependent ribonuclease {Human (Homo sapiens) [TaxId: 9606]} Length = 285

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: RNase L, 2-5a-dependent ribonuclease
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 78.1 bits (191), Expect = 5e-18
 Identities = 37/157 (23%), Positives = 55/157 (35%), Gaps = 49/157 (31%)

Query: 21  RKRFFRSVIDTDDRGWTPLHIGARKGDIKLVKQLLDE----------------------- 57
           R++           G T L   A KG ++++K LLDE                       
Sbjct: 134 RRKTKEDQERLRKGGATALMDAAEKGHVEVLKILLDEMGADVNACDNMGRNALIHALLSS 193

Query: 58  ---------------GMDVNVAAWGPKSKGVTPLHLAAQGGHLEVMDVLLER-GADIDAR 101
                          G DVNV       +G TPL LA +  HL ++  LLE+   +I+  
Sbjct: 194 DDSDVEAITHLLLDHGADVNVRG----ERGKTPLILAVEKKHLGLVQRLLEQEHIEINDT 249

Query: 102 TKGACGWTPLHTAAKERKKEAVRFLIENGAFLPDDIN 138
                G T L  A + + K+    L + GA      +
Sbjct: 250 DS--DGKTALLLAVELKLKKIAELLCKRGA----STD 280

>d1wdya_ d.211.1.1 (A:) RNase L, 2-5a-dependent ribonuclease {Human (Homo sapiens) [TaxId: 9606]} Length = 285

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: RNase L, 2-5a-dependent ribonuclease
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 73.5 bits (179), Expect = 2e-16
 Identities = 23/72 (31%), Positives = 38/72 (52%), Gaps = 5/72 (6%)

Query: 31  TDDRGWTPLHIGARKGDIKLVKQLLD-EGMDVNVAAWGPKSKGVTPLHLAAQGGHLEVMD 89
             +RG TPL +   K  + LV++LL+ E +++N       S G T L LA +    ++ +
Sbjct: 215 RGERGKTPLILAVEKKHLGLVQRLLEQEHIEINDTD----SDGKTALLLAVELKLKKIAE 270

Query: 90  VLLERGADIDAR 101
           +L +RGA  D  
Sbjct: 271 LLCKRGASTDCG 282

>d1wdya_ d.211.1.1 (A:) RNase L, 2-5a-dependent ribonuclease {Human (Homo sapiens) [TaxId: 9606]} Length = 285

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: RNase L, 2-5a-dependent ribonuclease
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 60.4 bits (145), Expect = 9e-12
 Identities = 20/91 (21%), Positives = 39/91 (42%), Gaps = 1/91 (1%)

Query: 71  KGVTPLHLAAQGGHLEVMDVLLERGADIDARTKGACGWTPLHTAAKERKKEAVRFLIENG 130
           +    L  A Q   ++++  LLE GA+++ + +   GWTPLH A +  +++ V  L+ +G
Sbjct: 4   EDNHLLIKAVQNEDVDLVQQLLEGGANVNFQEE-EGGWTPLHNAVQMSREDIVELLLRHG 62

Query: 131 AFLPDDINDSRFNPPLHYCPSLEWAYEEMMR 161
           A       +      L          +  + 
Sbjct: 63  ADPVLRKKNGATPFLLAAIAGSVKLLKLFLS 93

>d1wdya_ d.211.1.1 (A:) RNase L, 2-5a-dependent ribonuclease {Human (Homo sapiens) [TaxId: 9606]} Length = 285

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: RNase L, 2-5a-dependent ribonuclease
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 59.6 bits (143), Expect = 2e-11
 Identities = 39/142 (27%), Positives = 63/142 (44%), Gaps = 17/142 (11%)

Query: 32  DDRGWTPLHIGARKGDIKLVKQLLDEGMDVNVAAWGPK------SKGVTPLHLAAQGGHL 85
           D  G+T     A  G +K +K L   G +VN+     +        G T L  AA+ GH+
Sbjct: 102 DFYGFTAFMEAAVYGKVKALKFLYKRGANVNLRRKTKEDQERLRKGGATALMDAAEKGHV 161

Query: 86  EVMDVLL-ERGADIDARTK-GACGWTPLHTAAKERKKEAV-RFLIENGAFLPDDIN--DS 140
           EV+ +LL E GAD++A    G         ++ +   EA+   L+++GA    D+N    
Sbjct: 162 EVLKILLDEMGADVNACDNMGRNALIHALLSSDDSDVEAITHLLLDHGA----DVNVRGE 217

Query: 141 RFNPPLHYCPSLEWAYEEMMRF 162
           R   PL      E  +  +++ 
Sbjct: 218 RGKTPLILAV--EKKHLGLVQR 237

>d1wdya_ d.211.1.1 (A:) RNase L, 2-5a-dependent ribonuclease {Human (Homo sapiens) [TaxId: 9606]} Length = 285

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: RNase L, 2-5a-dependent ribonuclease
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 55.0 bits (131), Expect = 7e-10
 Identities = 19/56 (33%), Positives = 30/56 (53%), Gaps = 3/56 (5%)

Query: 37 TPLHIGARKGDIKLVKQLLDEGMDVNVAAWGPKSKGVTPLHLAAQGGHLEVMDVLL 92
            L    +  D+ LV+QLL+ G +VN      +  G TPLH A Q    +++++LL
Sbjct: 7  HLLIKAVQNEDVDLVQQLLEGGANVNFQ---EEEGGWTPLHNAVQMSREDIVELLL 59

>d1wdya_ d.211.1.1 (A:) RNase L, 2-5a-dependent ribonuclease {Human (Homo sapiens) [TaxId: 9606]} Length = 285

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: RNase L, 2-5a-dependent ribonuclease
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 48.4 bits (114), Expect = 1e-07
 Identities = 36/170 (21%), Positives = 57/170 (33%), Gaps = 38/170 (22%)

Query: 31  TDDRGWTPLHIGARKGDIKLVKQLLDEGMDVNVAAWGPK--------------------- 69
            ++ GWTPLH   +     +V+ LL  G D  +                           
Sbjct: 35  EEEGGWTPLHNAVQMSREDIVELLLRHGADPVLRKKNGATPFLLAAIAGSVKLLKLFLSK 94

Query: 70  --------SKGVTPLHLAAQGGHLEVMDVLLERGADIDARTKGAC--------GWTPLHT 113
                     G T    AA  G ++ +  L +RGA+++ R K           G T L  
Sbjct: 95  GADVNECDFYGFTAFMEAAVYGKVKALKFLYKRGANVNLRRKTKEDQERLRKGGATALMD 154

Query: 114 AAKERKKEAVRFLI-ENGAFLPDDINDSRFNPPLHYCPSLEWAYEEMMRF 162
           AA++   E ++ L+ E GA +    N  R         S +   E +   
Sbjct: 155 AAEKGHVEVLKILLDEMGADVNACDNMGRNALIHALLSSDDSDVEAITHL 204

>d1s70b_ d.211.1.1 (B:) Myosin phosphatase targeting subunit 1, MYPT1 {Chicken (Gallus gallus) [TaxId: 9031]} Length = 291

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myosin phosphatase targeting subunit 1, MYPT1
species: Chicken (Gallus gallus) [TaxId: 9031]

 Score = 77.5 bits (189), Expect = 1e-17
 Identities = 29/93 (31%), Positives = 42/93 (45%), Gaps = 6/93 (6%)

Query: 28  VIDTDDRGWTPLHIGARKGDIKLVKQLLDEGMDVNVAAWGPKSKGVTPLHLAAQGGHLEV 87
            +     G T LH+ A KG  +++K L+    DVN+        G TPLH AA  G  E 
Sbjct: 192 DVRHAKSGGTALHVAAAKGYTEVLKLLIQARYDVNI----KDYDGWTPLHAAAHWGKEEA 247

Query: 88  MDVLLERGADIDARTKGACGWTPLHTAAKERKK 120
             +L+E   D++A  K   G T    A ++   
Sbjct: 248 CRILVENLCDMEAVNK--VGQTAFDVADEDILG 278

>d1s70b_ d.211.1.1 (B:) Myosin phosphatase targeting subunit 1, MYPT1 {Chicken (Gallus gallus) [TaxId: 9031]} Length = 291

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myosin phosphatase targeting subunit 1, MYPT1
species: Chicken (Gallus gallus) [TaxId: 9031]

 Score = 58.6 bits (140), Expect = 4e-11
 Identities = 27/80 (33%), Positives = 40/80 (50%), Gaps = 8/80 (10%)

Query: 72  GVTPLHLAAQGGHLEVMDVLLERGADIDARTKGACGWTPLHTAAKERKKEAVRFLIENGA 131
           G T LH+AA  G+ EV+ +L++   D++ +     GWTPLH AA   K+EA R L+EN  
Sbjct: 199 GGTALHVAAAKGYTEVLKLLIQARYDVNIKDY--DGWTPLHAAAHWGKEEACRILVENLC 256

Query: 132 FLPDDIN--DSRFNPPLHYC 149
               D+   +          
Sbjct: 257 ----DMEAVNKVGQTAFDVA 272

>d1s70b_ d.211.1.1 (B:) Myosin phosphatase targeting subunit 1, MYPT1 {Chicken (Gallus gallus) [TaxId: 9031]} Length = 291

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myosin phosphatase targeting subunit 1, MYPT1
species: Chicken (Gallus gallus) [TaxId: 9031]

 Score = 49.3 bits (116), Expect = 7e-08
 Identities = 26/94 (27%), Positives = 36/94 (38%), Gaps = 2/94 (2%)

Query: 69  KSKGVTPLHLAAQGGHLEVMDVLLERGADIDARTKGACGWTPLHTAAKERKKEAVRFLIE 128
           K         A   G  E +  LLERGADI+       G T LH A  +   + V+FL+E
Sbjct: 37  KFDDGAVFLAACSSGDTEEVLRLLERGADINYANV--DGLTALHQACIDDNVDMVKFLVE 94

Query: 129 NGAFLPDDINDSRFNPPLHYCPSLEWAYEEMMRF 162
           NGA +    N+                 E ++  
Sbjct: 95  NGANINQPDNEGWIPLHAAASCGYLDIAEYLISQ 128

>d1s70b_ d.211.1.1 (B:) Myosin phosphatase targeting subunit 1, MYPT1 {Chicken (Gallus gallus) [TaxId: 9031]} Length = 291

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myosin phosphatase targeting subunit 1, MYPT1
species: Chicken (Gallus gallus) [TaxId: 9031]

 Score = 45.1 bits (105), Expect = 2e-06
 Identities = 19/82 (23%), Positives = 34/82 (41%), Gaps = 13/82 (15%)

Query: 7  HEQLGPFTLQRKASRKRFFRSVIDTDDRGWTPLHIGARKGDIKLVKQLLDEGMDVNVAAW 66
             L P  ++RK ++ +F                     GD + V +LL+ G D+N A  
Sbjct: 21 ETDLEPPVVKRKKTKVKFDDG---------AVFLAACSSGDTEEVLRLLERGADINYA-- 69

Query: 67 GPKSKGVTPLHLAAQGGHLEVM 88
               G+T LH A    +++++
Sbjct: 70 --NVDGLTALHQACIDDNVDMV 89

>d2fo1e1 d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis elegans [TaxId: 6239]} Length = 277

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Lin-12
species: Caenorhabditis elegans [TaxId: 6239]

 Score = 72.5 bits (176), Expect = 4e-16
 Identities = 24/98 (24%), Positives = 38/98 (38%), Gaps = 5/98 (5%)

Query: 31  TDDRGWTPLHIGARKGDIKLVKQLLDEGMDVNVAAWGPKSKGVTPLHLAAQGGHLEVMDV 90
              +G T LH  A+  ++ +VK       +           G TP+ LAAQ G +EV+  
Sbjct: 183 EKYKGRTALHYAAQVSNMPIVKY---LVGEKGSNKDKQDEDGKTPIMLAAQEGRIEVVMY 239

Query: 91  LLERGADIDARTKGACGWTPLHTAAKERKKEAVRFLIE 128
           L+++GA ++A        T    A        V     
Sbjct: 240 LIQQGASVEAVDA--TDHTARQLAQANNHHNIVDIFDR 275

>d2fo1e1 d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis elegans [TaxId: 6239]} Length = 277

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Lin-12
species: Caenorhabditis elegans [TaxId: 6239]

 Score = 52.8 bits (125), Expect = 4e-09
 Identities = 16/86 (18%), Positives = 30/86 (34%), Gaps = 18/86 (20%)

Query: 37  TPLHI-GARKGDIKLVKQLLDEGMDVNVAAWGPKSK-GVTPLHLAAQGGHLEVMDVLL-- 92
           +P+ +     G   + + +  E +++         +   T LH  A     E  + L+  
Sbjct: 2   SPIKLHTEAAGSYAITEPITRESVNII------DPRHNRTVLHWIASNSSAEKSEDLIVH 55

Query: 93  ------ERGADIDARTKGACGWTPLH 112
                   GAD++A        TPL 
Sbjct: 56  EAKECIAAGADVNAMDC--DENTPLM 79

>d2fo1e1 d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis elegans [TaxId: 6239]} Length = 277

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Lin-12
species: Caenorhabditis elegans [TaxId: 6239]

 Score = 44.7 bits (104), Expect = 3e-06
 Identities = 22/80 (27%), Positives = 36/80 (45%), Gaps = 7/80 (8%)

Query: 71  KGVTPLHLAAQGGHLEVMDVLLERGADIDARTKGACGWTPLHTAAKERKKEAVRFLIENG 130
           KG T LH AAQ  ++ ++  L+          +   G TP+  AA+E + E V +LI+ G
Sbjct: 186 KGRTALHYAAQVSNMPIVKYLVGEKGSNK-DKQDEDGKTPIMLAAQEGRIEVVMYLIQQG 244

Query: 131 AFLPDDIN--DSRFNPPLHY 148
           A     +   D+  +     
Sbjct: 245 A----SVEAVDATDHTARQL 260

>d2fo1e1 d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis elegans [TaxId: 6239]} Length = 277

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Lin-12
species: Caenorhabditis elegans [TaxId: 6239]

 Score = 37.4 bits (85), Expect = 7e-04
 Identities = 23/140 (16%), Positives = 41/140 (29%), Gaps = 7/140 (5%)

Query: 28  VIDTDDRGWTPLHIGARKGDIKLVKQLLDEGMDVNVAA----WGPKSKGVTPLHLAAQGG 83
           +ID      T LH  A     +  + L+       +AA            TPL LA    
Sbjct: 27  IIDPRH-NRTVLHWIASNSSAEKSEDLIVHEAKECIAAGADVNAMDCDENTPLMLAVLAR 85

Query: 84  HLEVMDVLLERGADIDARTKGACGWTPLHTAAKERKKEAVRFLIENGAFLPDDINDSRFN 143
              ++       A  D         + LH AA  R    + +++ +     D     R  
Sbjct: 86  RRRLVAY--LMKAGADPTIYNKSERSALHQAAANRDFGMMVYMLNSTKLKGDIEELDRNG 143

Query: 144 PPLHYCPSLEWAYEEMMRFQ 163
                  +     +++   +
Sbjct: 144 MTALMIVAHNEGRDQVASAK 163

>d1uoha_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Human (Homo sapiens) [TaxId: 9606]} Length = 223

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 68.1 bits (165), Expect = 1e-14
 Identities = 29/127 (22%), Positives = 45/127 (35%), Gaps = 32/127 (25%)

Query: 31  TDDRGWTPLHIGARKGDIKLVKQLLDEGMDVNVA-------------------------- 64
            +  G TPLH  A K   ++   LL+ G + +                            
Sbjct: 99  VNQNGCTPLHYAASKNRHEIAVMLLEGGANPDAKDHYEATAMHRAAAKGNLKMIHILLYY 158

Query: 65  ---AWGPKSKGVTPLHLAAQGGHLEVMDVLLERGADIDARTKGACGWTPLHTAAKERKKE 121
                   ++G TPLHLA     +E   +L+ +GA I    K     TPL   AK     
Sbjct: 159 KASTNIQDTEGNTPLHLACDEERVEEAKLLVSQGASIYIENKE--EKTPLQ-VAKGGLGL 215

Query: 122 AVRFLIE 128
            ++ ++E
Sbjct: 216 ILKRMVE 222

>d1uoha_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Human (Homo sapiens) [TaxId: 9606]} Length = 223

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 59.6 bits (143), Expect = 1e-11
 Identities = 39/130 (30%), Positives = 57/130 (43%), Gaps = 8/130 (6%)

Query: 31  TDDRGWTPLHIGARKGDIKLVKQLLDEGMDVNVAAWGPKSKGVTPLHLAAQGGHLEVMDV 90
           TD    T LH     G  ++V+ LL  G+ VN           +PLH+AA  G  E++  
Sbjct: 33  TDQDSRTALHWACSAGHTEIVEFLLQLGVPVNDKDDAGW----SPLHIAASAGRDEIVKA 88

Query: 91  LLERGADIDARTKGACGWTPLHTAAKERKKEAVRFLIENGAFLPDDINDSRFNPPLHYCP 150
           LL +GA ++A  +   G TPLH AA + + E    L+E GA    D  D      +H   
Sbjct: 89  LLGKGAQVNAVNQN--GCTPLHYAASKNRHEIAVMLLEGGANP--DAKDHYEATAMHRAA 144

Query: 151 SLEWAYEEMM 160
           +        +
Sbjct: 145 AKGNLKMIHI 154

>d1uoha_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Human (Homo sapiens) [TaxId: 9606]} Length = 223

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 50.4 bits (119), Expect = 2e-08
 Identities = 17/70 (24%), Positives = 32/70 (45%), Gaps = 5/70 (7%)

Query: 24  FFRSVIDTDDRGWTPLHIGARKGDIKLVKQLLDEGMDVNVAAWGPKSKGVTPLHLAAQGG 83
           +  S    D  G TPLH+   +  ++  K L+ +G  + +       +  TPL +A  GG
Sbjct: 158 YKASTNIQDTEGNTPLHLACDEERVEEAKLLVSQGASIYIEN----KEEKTPLQVAK-GG 212

Query: 84  HLEVMDVLLE 93
              ++  ++E
Sbjct: 213 LGLILKRMVE 222

>d1uoha_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Human (Homo sapiens) [TaxId: 9606]} Length = 223

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.6 bits (86), Expect = 4e-04
 Identities = 9/42 (21%), Positives = 15/42 (35%), Gaps = 3/42 (7%)

Query: 76  LHLAAQGGHLE-VMDVLLERGADIDARTKGACGWTPLHTAAK 116
           +   A  G LE + + +L   +      +     T LH A  
Sbjct: 7   VCNLAYSGKLEELKESILADKSLATRTDQD--SRTALHWACS 46

>d1oy3d_ d.211.1.1 (D:) Transcription factor inhibitor I-kappa-B-beta, IKBB {Mouse (Mus musculus) [TaxId: 10090]} Length = 255

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Transcription factor inhibitor I-kappa-B-beta, IKBB
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 67.0 bits (162), Expect = 4e-14
 Identities = 26/119 (21%), Positives = 36/119 (30%), Gaps = 3/119 (2%)

Query: 32  DDRGWTPLHIGARKGDIKLVKQLLDEGMDVNVAAWGPKSKGVTPLHLAAQGGHLEVMDVL 91
            + G T LH+         +  LL                G T LHLAA  G    ++ L
Sbjct: 6   TEDGDTALHLAVIHQHEPFLDFLLGFSAGHEYLDL-QNDLGQTALHLAAILGEASTVEKL 64

Query: 92  LERGADIDARTKGACGWTPLHTAAKERKKEAVRFLIENGAFLPDDINDSRFNPPLHYCP 150
                          G T LH A + R       L++     P D +D+         P
Sbjct: 65  YAA--GAGVLVAERGGHTALHLACRVRAHTCACVLLQPRPSHPRDASDTYLTQSQDCTP 121

>d1oy3d_ d.211.1.1 (D:) Transcription factor inhibitor I-kappa-B-beta, IKBB {Mouse (Mus musculus) [TaxId: 10090]} Length = 255

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Transcription factor inhibitor I-kappa-B-beta, IKBB
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 65.1 bits (157), Expect = 2e-13
 Identities = 25/63 (39%), Positives = 33/63 (52%), Gaps = 2/63 (3%)

Query: 74  TPLHLAAQGGHLEVMDVLLERGADIDARTKGACGWTPLHTAAKERKKEAVRFLIENGAFL 133
           TPLHLA +     V+++LL+ GAD  AR     G TPL +A         R L  +GA  
Sbjct: 194 TPLHLAVEAQAASVLELLLKAGADPTARMY--GGRTPLGSALLRPNPILARLLRAHGAPE 251

Query: 134 PDD 136
           P+D
Sbjct: 252 PED 254

>d1oy3d_ d.211.1.1 (D:) Transcription factor inhibitor I-kappa-B-beta, IKBB {Mouse (Mus musculus) [TaxId: 10090]} Length = 255

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Transcription factor inhibitor I-kappa-B-beta, IKBB
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 57.8 bits (138), Expect = 6e-11
 Identities = 16/64 (25%), Positives = 23/64 (35%), Gaps = 4/64 (6%)

Query: 36  WTPLHIGARKGDIKLVKQLLDEGMDVNVAAWGPKSKGVTPLHLAAQGGHLEVMDVLLERG 95
            TPLH+        +++ LL  G D           G TPL  A    +  +  +L   G
Sbjct: 193 RTPLHLAVEAQAASVLELLLKAGADPTARM----YGGRTPLGSALLRPNPILARLLRAHG 248

Query: 96  ADID 99
           A   
Sbjct: 249 APEP 252

>d1oy3d_ d.211.1.1 (D:) Transcription factor inhibitor I-kappa-B-beta, IKBB {Mouse (Mus musculus) [TaxId: 10090]} Length = 255

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Transcription factor inhibitor I-kappa-B-beta, IKBB
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 57.8 bits (138), Expect = 6e-11
 Identities = 24/140 (17%), Positives = 41/140 (29%), Gaps = 1/140 (0%)

Query: 72  GVTPLHLAAQGGHLEVMDVLLERGADIDAR-TKGACGWTPLHTAAKERKKEAVRFLIENG 130
           G T LHLA    H   +D LL   A  +    +   G T LH AA   +   V  L   G
Sbjct: 9   GDTALHLAVIHQHEPFLDFLLGFSAGHEYLDLQNDLGQTALHLAAILGEASTVEKLYAAG 68

Query: 131 AFLPDDINDSRFNPPLHYCPSLEWAYEEMMRFQRESFSAGETSYSSEKLNALSRLLVHMM 190
           A +            L            +++ +         +Y ++  +          
Sbjct: 69  AGVLVAERGGHTALHLACRVRAHTCACVLLQPRPSHPRDASDTYLTQSQDCTPDTSHAPA 128

Query: 191 PLLWLDLASDAVLSVDHHYK 210
            +       +     D  ++
Sbjct: 129 AVDSQPNPENEEEPRDEDWR 148

>d1oy3d_ d.211.1.1 (D:) Transcription factor inhibitor I-kappa-B-beta, IKBB {Mouse (Mus musculus) [TaxId: 10090]} Length = 255

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Transcription factor inhibitor I-kappa-B-beta, IKBB
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 43.9 bits (102), Expect = 4e-06
 Identities = 24/143 (16%), Positives = 42/143 (29%), Gaps = 12/143 (8%)

Query: 31  TDDRGWTPLHIGARKGDIKLVKQLLDEGMDVNVAAWGPKSKGVTPLHLAAQGGHLEVMDV 90
            +D G T LH+ A  G+   V++               +  G T LHLA +        V
Sbjct: 41  QNDLGQTALHLAAILGEASTVEK----LYAAGAGVLVAERGGHTALHLACRVRAHTCACV 96

Query: 91  LLERGADIDART--------KGACGWTPLHTAAKERKKEAVRFLIENGAFLPDDINDSRF 142
           LL+                 +     T    AA + +                 +    +
Sbjct: 97  LLQPRPSHPRDASDTYLTQSQDCTPDTSHAPAAVDSQPNPENEEEPRDEDWRLQLEAENY 156

Query: 143 NPPLHYCPSLEWAYEEMMRFQRE 165
           +       ++     EM+R  R+
Sbjct: 157 DGHTPLHVAVIHKDAEMVRLLRD 179

>d1oy3d_ d.211.1.1 (D:) Transcription factor inhibitor I-kappa-B-beta, IKBB {Mouse (Mus musculus) [TaxId: 10090]} Length = 255

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Transcription factor inhibitor I-kappa-B-beta, IKBB
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 36.2 bits (82), Expect = 0.002
 Identities = 28/121 (23%), Positives = 49/121 (40%), Gaps = 12/121 (9%)

Query: 31  TDDRGWTPLHIGARK-GDIKLVKQLLDEGMDVNVAAWGPKSKGVTPLHLAAQGGHLEVMD 89
           T D    P  + ++   + +   +  D  + +    +     G TPLH+A      E++ 
Sbjct: 120 TPDTSHAPAAVDSQPNPENEEEPRDEDWRLQLEAENY----DGHTPLHVAVIHKDAEMVR 175

Query: 90  VLLERGADIDARTKGACGWTPLHTAAKERKKEAVRFLIENGAFLPDDIN--DSRFNPPLH 147
           +L + GAD++      CG TPLH A + +    +  L++ GA    D          PL 
Sbjct: 176 LLRDAGADLNKPEPT-CGRTPLHLAVEAQAASVLELLLKAGA----DPTARMYGGRTPLG 230

Query: 148 Y 148
            
Sbjct: 231 S 231

>d1oy3d_ d.211.1.1 (D:) Transcription factor inhibitor I-kappa-B-beta, IKBB {Mouse (Mus musculus) [TaxId: 10090]} Length = 255

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Transcription factor inhibitor I-kappa-B-beta, IKBB
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 35.8 bits (81), Expect = 0.002
 Identities = 7/28 (25%), Positives = 10/28 (35%)

Query: 31  TDDRGWTPLHIGARKGDIKLVKQLLDEG 58
               G TPL     + +  L + L   G
Sbjct: 221 RMYGGRTPLGSALLRPNPILARLLRAHG 248

>d1sw6a_ d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 301

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Swi6 ankyrin-repeat fragment
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 67.0 bits (162), Expect = 6e-14
 Identities = 19/91 (20%), Positives = 38/91 (41%), Gaps = 9/91 (9%)

Query: 28  VIDTDDRGWTPLHIGARKGDIKLVKQLLDE---GMDVNVAAWGPKSKGVTPLHLAAQGGH 84
           +    +   +  +    +    +++ L  +      +N       S G T L++AA+ G+
Sbjct: 216 IQSGTNEKESKPNDKNGERKDSILENLDLKWIIANMLNAQD----SNGDTCLNIAARLGN 271

Query: 85  LEVMDVLLERGADIDARTKGACGWTPLHTAA 115
           + ++D LL+ GAD     K   G  P+   A
Sbjct: 272 ISIVDALLDYGADPFIANK--SGLRPVDFGA 300

>d1sw6a_ d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 301

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Swi6 ankyrin-repeat fragment
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 61.2 bits (147), Expect = 5e-12
 Identities = 24/135 (17%), Positives = 43/135 (31%), Gaps = 20/135 (14%)

Query: 28  VIDTDDRGWTPLHI----GARKGDIKLVKQLLDEGMDVNVAAWG-----PKSKGVTPLHL 78
           +I  D    T LH         G     K  LD  M   V           ++  +  + 
Sbjct: 170 LILEDSMNRTILHHIIITSGMTGCSAAAKYYLDILMGWIVKKQNRPIQSGTNEKESKPND 229

Query: 79  AAQGGHLEVMDVLLER---GADIDARTKGACGWTPLHTAAKERKKEAVRFLIENGAFLPD 135
                   +++ L  +      ++A+     G T L+ AA+      V  L++ GA    
Sbjct: 230 KNGERKDSILENLDLKWIIANMLNAQDS--NGDTCLNIAARLGNISIVDALLDYGA---- 283

Query: 136 DIN--DSRFNPPLHY 148
           D    +     P+ +
Sbjct: 284 DPFIANKSGLRPVDF 298

>d1sw6a_ d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 301

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Swi6 ankyrin-repeat fragment
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 58.1 bits (139), Expect = 8e-11
 Identities = 20/122 (16%), Positives = 40/122 (32%), Gaps = 7/122 (5%)

Query: 30  DTDDRGWTPLHIGARKGDIKLVKQLLDEGMDVNVAAWGPKSKGVTPLHLAAQGGHLEVMD 89
           +         H+       ++     +  +++N+        G TPLH      +LE++ 
Sbjct: 68  EGGSSNQQQQHVSFDSLLQEVNDAFPNTQLNLNIPV---DEHGNTPLHWLTSIANLELVK 124

Query: 90  VLLERGADIDARTKGACGWTPLHTAAKERKKEAVRFLIENGAFLPDDIN--DSRFNPPLH 147
            L++ G++         G + L  A K               +L   +   DS     LH
Sbjct: 125 HLVKHGSNRLYGDN--MGESCLVKAVKSVNNYDSGTFEALLDYLYPCLILEDSMNRTILH 182

Query: 148 YC 149
           + 
Sbjct: 183 HI 184

>d1sw6a_ d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 301

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Swi6 ankyrin-repeat fragment
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 52.4 bits (124), Expect = 6e-09
 Identities = 24/166 (14%), Positives = 49/166 (29%), Gaps = 47/166 (28%)

Query: 29  IDTDDRGWTPLHIGARKGDIKLVKQLLDEGMDVNVAAWGPKS------------------ 70
           I  D+ G TPLH      +++LVK L+  G +        +S                  
Sbjct: 101 IPVDEHGNTPLHWLTSIANLELVKHLVKHGSNRLYGDNMGESCLVKAVKSVNNYDSGTFE 160

Query: 71  ---------------KGVTPLHLAAQGGH-----------LEVMDVLLERGADIDARTKG 104
                             T LH                  L+++   + +  +   ++  
Sbjct: 161 ALLDYLYPCLILEDSMNRTILHHIIITSGMTGCSAAAKYYLDILMGWIVKKQNRPIQSGT 220

Query: 105 ACGWTPLHTAAKERKKEAVRFLIENGAFLPDDIN--DSRFNPPLHY 148
               +  +    ERK   +   ++    + + +N  DS  +  L+ 
Sbjct: 221 NEKESKPNDKNGERKDSILE-NLDLKWIIANMLNAQDSNGDTCLNI 265

>d1dcqa1 d.211.1.1 (A:369-522) Pyk2-associated protein beta {Mouse (Mus musculus) [TaxId: 10090]} Length = 154

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Pyk2-associated protein beta
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 63.5 bits (153), Expect = 2e-13
 Identities = 27/152 (17%), Positives = 47/152 (30%), Gaps = 47/152 (30%)

Query: 35  GWTPLHI---GARKGDIKLVKQLLDEGMDVN--VAAWGPKSKGVTPLHLAAQ---GGHLE 86
               LH      +  DI  + Q   +G+D+   +          T LHLA +      L 
Sbjct: 3   TAAKLHSLCEAVKTRDIFGLLQAYADGVDLTEKIPLANGHEPDETALHLAVRSVDRTSLH 62

Query: 87  VMDVLLERGADIDARTKGAC-------------------------------GWTPLHTAA 115
           ++D L++   ++D +T                                   G TPL  A 
Sbjct: 63  IVDFLVQNSGNLDKQTGKGSTALHYCCLTDNAECLKLLLRGKASIEIANESGETPLDIAK 122

Query: 116 KERKKEAVRFLIENGAFLPDDINDSRFNPPLH 147
           + + +     L +  +         RFN  +H
Sbjct: 123 RLKHEHCEELLTQALS--------GRFNSHVH 146

>d1dcqa1 d.211.1.1 (A:369-522) Pyk2-associated protein beta {Mouse (Mus musculus) [TaxId: 10090]} Length = 154

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Pyk2-associated protein beta
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 49.2 bits (116), Expect = 2e-08
 Identities = 15/115 (13%), Positives = 33/115 (28%), Gaps = 33/115 (28%)

Query: 30  DTDDRGWTPLHIGAR---KGDIKLVKQLLDEGMDVNVAAWGPK----------------- 69
           +  +   T LH+  R   +  + +V  L+    +++                        
Sbjct: 40  NGHEPDETALHLAVRSVDRTSLHIVDFLVQNSGNLDKQTGKGSTALHYCCLTDNAECLKL 99

Query: 70  ------------SKGVTPLHLAAQGGHLEVMDVLLERGAD-IDARTKGACGWTPL 111
                         G TPL +A +  H    ++L +  +   ++       W  L
Sbjct: 100 LLRGKASIEIANESGETPLDIAKRLKHEHCEELLTQALSGRFNSHVHVEYEWRLL 154

>d1ixva_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 229

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 59.4 bits (142), Expect = 2e-11
 Identities = 27/102 (26%), Positives = 39/102 (38%), Gaps = 9/102 (8%)

Query: 31  TDDRGWTPLHIGARKGDIKLVKQLLDEGMDVNVAAWGPKSKGVTPLHLAAQGGHLEVMDV 90
            D     PLH  A  G +KL++ L   G            +G TPL  A   GH +   +
Sbjct: 134 KDKFNQIPLHRAASVGSLKLIELLCGLGKSAV---NWQDKQGWTPLFHALAEGHGDAAVL 190

Query: 91  LLER-GADIDARTKGACGWTPLHTAAKERKKEAVRFLIENGA 131
           L+E+ GA+ D       G      A  E   +  +F + N  
Sbjct: 191 LVEKYGAEYDLVDN--KGAKAEDVALNE---QVKKFFLNNVV 227

>d1ixva_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 229

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 53.7 bits (127), Expect = 1e-09
 Identities = 15/91 (16%), Positives = 27/91 (29%), Gaps = 3/91 (3%)

Query: 74  TPLHLAAQGGHLEVMDVLLE-RGADIDARTKGACGWTPLHTAAKERKKEAVRFLIENGAF 132
            PLH A        +  LL  + + +  + +   G  PLH +   +  E   FL+     
Sbjct: 2   YPLHQACMENEFFKVQELLHSKPSLLLQKDQ--DGRIPLHWSVSFQAHEITSFLLSKMEN 59

Query: 133 LPDDINDSRFNPPLHYCPSLEWAYEEMMRFQ 163
           +  D           +        E +    
Sbjct: 60  VNLDDYPDDSGWTPFHIACSVGNLEVVKSLY 90

>d1ixva_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 229

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 50.6 bits (119), Expect = 2e-08
 Identities = 18/125 (14%), Positives = 35/125 (28%), Gaps = 5/125 (4%)

Query: 37  TPLHIGARKGDIKLVKQLLDE-GMDVNVAAWGPKSKGVTPLHLAAQGGHLEVMDVLLERG 95
            PLH    + +   V++LL      +          G  PLH +      E+   LL + 
Sbjct: 2   YPLHQACMENEFFKVQELLHSKPSLLLQK----DQDGRIPLHWSVSFQAHEITSFLLSKM 57

Query: 96  ADIDARTKGACGWTPLHTAAKERKKEAVRFLIENGAFLPDDINDSRFNPPLHYCPSLEWA 155
            +++               A       V   + +    PD    +       +    +  
Sbjct: 58  ENVNLDDYPDDSGWTPFHIACSVGNLEVVKSLYDRPLKPDLNKITNQGVTCLHLAVGKKW 117

Query: 156 YEEMM 160
           +E   
Sbjct: 118 FEVSQ 122

>d1ixva_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 229

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 47.9 bits (112), Expect = 2e-07
 Identities = 16/71 (22%), Positives = 28/71 (39%), Gaps = 8/71 (11%)

Query: 28  VIDTDDRGWTPLHIGARKGDIKLVKQLLDE-GMDVNVAAWGPKSKGVTPLHLAAQGGHLE 86
           V   D +GWTPL     +G       L+++ G + ++      +KG     +A    + +
Sbjct: 165 VNWQDKQGWTPLFHALAEGHGDAAVLLVEKYGAEYDL----VDNKGAKAEDVAL---NEQ 217

Query: 87  VMDVLLERGAD 97
           V    L    D
Sbjct: 218 VKKFFLNNVVD 228

>d1ixva_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 229

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 36.3 bits (82), Expect = 0.001
 Identities = 23/89 (25%), Positives = 36/89 (40%), Gaps = 4/89 (4%)

Query: 66  WGPKSKGVTPLHLAAQGGHLEVMDVLLERGADIDARTKGACGWTPLHTAAKERKKEAVRF 125
                    PLH AA  G L+++++L   G       +   GWTPL  A  E   +A   
Sbjct: 132 RIKDKFNQIPLHRAASVGSLKLIELLCGLG-KSAVNWQDKQGWTPLFHALAEGHGDAAVL 190

Query: 126 LIEN-GAFLPDDINDSRFNPPLHYCPSLE 153
           L+E  GA    D+ D++         + +
Sbjct: 191 LVEKYGAEY--DLVDNKGAKAEDVALNEQ 217

>d1ot8a_ d.211.1.1 (A:) Neurogenic locus notch receptor domain {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 209

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Neurogenic locus notch receptor domain
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

 Score = 57.1 bits (136), Expect = 7e-11
 Identities = 25/96 (26%), Positives = 38/96 (39%), Gaps = 6/96 (6%)

Query: 31  TDDRGWTPLHIGARKGDIKLVKQLLDEGMDVNVAAWGPKSKGVTPLHLAAQGGHLEVMDV 90
            D+ G T LH  A   + + V  LL    + +      +    TPL LAA+ G  E    
Sbjct: 119 ADNSGKTALHWAAAVNNTEAVNILLMHHANRDAQDDKDE----TPLFLAAREGSYEASKA 174

Query: 91  LLERGADIDARTKGACGWTPLHTAAKERKKEAVRFL 126
           LL+  A+ +          P   A++    + VR L
Sbjct: 175 LLDNFANREITDH--MDRLPRDVASERLHHDIVRLL 208

>d1ot8a_ d.211.1.1 (A:) Neurogenic locus notch receptor domain {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 209

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Neurogenic locus notch receptor domain
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

 Score = 47.1 bits (110), Expect = 2e-07
 Identities = 23/109 (21%), Positives = 47/109 (43%), Gaps = 1/109 (0%)

Query: 86  EVMDVLLERGADIDARTKGACGWTPLHTAAKERKKEAVRFLIENGAFLPDDINDSRFNPP 145
           +V+  LL +GA+++A      G T LH AA+  + +A + L++ GA      N  R    
Sbjct: 3   QVISDLLAQGAELNATM-DKTGETSLHLAARFARADAAKRLLDAGADANSQDNTGRTPLH 61

Query: 146 LHYCPSLEWAYEEMMRFQRESFSAGETSYSSEKLNALSRLLVHMMPLLW 194
                     ++ ++R +  + +A     ++  + A    +  M+  L 
Sbjct: 62  AAVAADAMGVFQILLRNRATNLNARMHDGTTPLILAARLAIEGMVEDLI 110

>d1ot8a_ d.211.1.1 (A:) Neurogenic locus notch receptor domain {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 209

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Neurogenic locus notch receptor domain
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

 Score = 42.1 bits (97), Expect = 1e-05
 Identities = 12/43 (27%), Positives = 20/43 (46%), Gaps = 3/43 (6%)

Query: 49 KLVKQLLDEGMDVNVAAWGPKSKGVTPLHLAAQGGHLEVMDVL 91
          +++  LL +G ++N         G T LHLAA+    +    L
Sbjct: 3  QVISDLLAQGAELNATM---DKTGETSLHLAARFARADAAKRL 42

>d1ot8a_ d.211.1.1 (A:) Neurogenic locus notch receptor domain {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 209

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Neurogenic locus notch receptor domain
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

 Score = 34.8 bits (78), Expect = 0.004
 Identities = 31/113 (27%), Positives = 46/113 (40%), Gaps = 8/113 (7%)

Query: 36  WTPLHIGARKGDIKLVKQLLDEGMDVNVAAWGPKSKGVTPLHLAAQGGHLEVMDVLLERG 95
            TPL + AR     +V+ L+    D+N A     + G T LH AA   +     V +   
Sbjct: 91  TTPLILAARLAIEGMVEDLITADADINAAD----NSGKTALHWAAAVNN--TEAVNILLM 144

Query: 96  ADIDARTKGACGWTPLHTAAKERKKEAVRFLIENGAFLPDDINDSRFNPPLHY 148
              +   +     TPL  AA+E   EA + L++N A    +I D     P   
Sbjct: 145 HHANRDAQDDKDETPLFLAAREGSYEASKALLDNFANR--EITDHMDRLPRDV 195

>d1k1aa_ d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId: 9606]} Length = 228

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: bcl-3
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 56.8 bits (135), Expect = 1e-10
 Identities = 23/89 (25%), Positives = 36/89 (40%), Gaps = 6/89 (6%)

Query: 36  WTPLHIGARKGDIKLVKQLLDEGMDVNVAAWGPKSKGVTPLHLAAQGGHLEVMDVLLERG 95
            +PL        + +V+ LL  G +V          G + LH A+  G L ++  L+  G
Sbjct: 145 RSPLIHAVENNSLSMVQLLLQHGANV----NAQMYSGSSALHSASGRGLLPLVRTLVRSG 200

Query: 96  ADIDARTKGACGWTPLHTAAKERKKEAVR 124
           AD   +       TPL  A   R  + +R
Sbjct: 201 ADSSLKNC--HNDTPLMVARSRRVIDILR 227

>d1k1aa_ d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId: 9606]} Length = 228

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: bcl-3
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 48.7 bits (114), Expect = 7e-08
 Identities = 13/54 (24%), Positives = 26/54 (48%), Gaps = 4/54 (7%)

Query: 35  GWTPLHIGARKGDIKLVKQLLDEGMDVNVAAWGPKSKGVTPLHLAAQGGHLEVM 88
           G + LH  + +G + LV+ L+  G D ++          TPL +A     ++++
Sbjct: 177 GSSALHSASGRGLLPLVRTLVRSGADSSL----KNCHNDTPLMVARSRRVIDIL 226

>d1k1aa_ d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId: 9606]} Length = 228

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: bcl-3
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 45.6 bits (106), Expect = 1e-06
 Identities = 31/134 (23%), Positives = 60/134 (44%), Gaps = 10/134 (7%)

Query: 33  DRGWTPLHIGARKGDIKLVKQLLDE----GMDVNVAAWGPKSKGVTPLHLAAQGGHLEVM 88
           + G TPLHI   +G++  V +L++     G ++++      +   TPLHLA       V+
Sbjct: 1   EDGDTPLHIAVVQGNLPAVHRLVNLFQQGGRELDIY----NNLRQTPLHLAVITTLPSVV 56

Query: 89  DVLLERGADIDARTKGACGWTPLHTAAKERKKEAVRFLIENGAFLPDDINDSRFNPPLHY 148
            +L+  GA   A  +   G T  H A + R    +R L+++ A    D+    ++     
Sbjct: 57  RLLVTAGASPMALDR--HGQTAAHLACEHRSPTCLRALLDSAAPGTLDLEARNYDGLTAL 114

Query: 149 CPSLEWAYEEMMRF 162
             ++    +E ++ 
Sbjct: 115 HVAVNTECQETVQL 128

>d1k1aa_ d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId: 9606]} Length = 228

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: bcl-3
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.7 bits (88), Expect = 2e-04
 Identities = 31/116 (26%), Positives = 55/116 (47%), Gaps = 11/116 (9%)

Query: 35  GWTPLHIGARKGDIKLVKQLLDEGMDVNVAAWGPKSKGVTPLHLAAQGGHLEVMDVLLER 94
           G T LH+       + V+ LL+ G D++         G +PL  A +   L ++ +LL+ 
Sbjct: 110 GLTALHVAVNTECQETVQLLLERGADID---AVDIKSGRSPLIHAVENNSLSMVQLLLQH 166

Query: 95  GADIDARTKGACGWTPLHTAAKERKKEAVRFLIENGAFLPDDIN--DSRFNPPLHY 148
           GA+++A+     G + LH+A+       VR L+ +GA    D +  +   + PL  
Sbjct: 167 GANVNAQMY--SGSSALHSASGRGLLPLVRTLVRSGA----DSSLKNCHNDTPLMV 216

>d1iknd_ d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 221

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: I-kappa-B-alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 50.7 bits (119), Expect = 2e-08
 Identities = 16/69 (23%), Positives = 23/69 (33%), Gaps = 4/69 (5%)

Query: 35  GWTPLHIGARKGDIKLVKQLLDEGMDVNVAAWGPKSKGVTPLHLAAQGGHLEVMDVLLER 94
           G T LH+     +  LV  LL  G DVN        +G +P  L        +   L + 
Sbjct: 145 GRTALHLAVDLQNPDLVSLLLKCGADVNRVT----YQGYSPYQLTWGRPSTRIQQQLGQL 200

Query: 95  GADIDARTK 103
             +      
Sbjct: 201 TLENLQMLP 209

>d1iknd_ d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 221

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: I-kappa-B-alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 49.5 bits (116), Expect = 4e-08
 Identities = 15/66 (22%), Positives = 27/66 (40%), Gaps = 2/66 (3%)

Query: 66  WGPKSKGVTPLHLAAQGGHLEVMDVLLERGADIDARTKGACGWTPLHTAAKERKKEAVRF 125
                 G T LHLA    + +++ +LL+ GAD++  T    G++P             + 
Sbjct: 139 AQEPCNGRTALHLAVDLQNPDLVSLLLKCGADVNRVTY--QGYSPYQLTWGRPSTRIQQQ 196

Query: 126 LIENGA 131
           L +   
Sbjct: 197 LGQLTL 202

>d1iknd_ d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 221

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: I-kappa-B-alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 48.0 bits (112), Expect = 1e-07
 Identities = 17/94 (18%), Positives = 29/94 (30%), Gaps = 6/94 (6%)

Query: 72  GVTPLHLAAQGGH----LEVMDVLLERGADIDARTKGACGWTPLHTAAKERKKEAVRFLI 127
           G + LHLA         +EV+  +    A ++ +       TPLH A    + E    L+
Sbjct: 2   GDSFLHLAIIHEEKALTMEVIRQVKGDLAFLNFQNN--LQQTPLHLAVITNQPEIAEALL 59

Query: 128 ENGAFLPDDINDSRFNPPLHYCPSLEWAYEEMMR 161
             G               L        +   + +
Sbjct: 60  GAGCDPELRDFRGNTPLHLACEQGCLASVGVLTQ 93

>d1iknd_ d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 221

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: I-kappa-B-alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.5 bits (90), Expect = 1e-04
 Identities = 11/54 (20%), Positives = 22/54 (40%), Gaps = 8/54 (14%)

Query: 35 GWTPLHIGARKGDI----KLVKQLLDEGMDVNVAAWGPKSKGVTPLHLAAQGGH 84
          G + LH+     +     ++++Q+  +   +N       +   TPLHLA     
Sbjct: 2  GDSFLHLAIIHEEKALTMEVIRQVKGDLAFLNF----QNNLQQTPLHLAVITNQ 51

>d1iknd_ d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 221

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: I-kappa-B-alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.0 bits (86), Expect = 4e-04
 Identities = 10/59 (16%), Positives = 16/59 (27%), Gaps = 2/59 (3%)

Query: 107 GWTPLHTAAKERKKEAVRFLIENGAFLPDDIN--DSRFNPPLHYCPSLEWAYEEMMRFQ 163
           G + LH A    +K     +I         +N  ++    PLH                
Sbjct: 2   GDSFLHLAIIHEEKALTMEVIRQVKGDLAFLNFQNNLQQTPLHLAVITNQPEIAEALLG 60

>d1iknd_ d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 221

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: I-kappa-B-alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 35.3 bits (79), Expect = 0.003
 Identities = 4/30 (13%), Positives = 14/30 (46%)

Query: 31  TDDRGWTPLHIGARKGDIKLVKQLLDEGMD 60
              +G++P  +   +   ++ +QL    ++
Sbjct: 174 VTYQGYSPYQLTWGRPSTRIQQQLGQLTLE 203

>d1ycsb1 d.211.1.1 (B:327-456) 53BP2 {Human (Homo sapiens) [TaxId: 9606]} Length = 130

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 53BP2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 48.9 bits (115), Expect = 2e-08
 Identities = 23/125 (18%), Positives = 41/125 (32%), Gaps = 30/125 (24%)

Query: 37  TPLHIGARKGDIKLVKQLLDEGMDVNVAAWGPKS-------------------------- 70
             L   + +G+  LV++++ E  D ++      +                          
Sbjct: 3   ALLLDSSLEGEFDLVQRIIYEVDDPSLPNDEGITALHNAVCAGHTEIVKFLVQFGVNVNA 62

Query: 71  ---KGVTPLHLAAQGGHLEVMDVLLERGADIDART-KGACGWTPLHTAAKERKKEAVRFL 126
               G TPLH AA   +++V   L+E GA + A T              +E   +  +FL
Sbjct: 63  ADSDGWTPLHCAASCNNVQVCKFLVESGAAVFAMTYSDMQTAADKCEEMEEGYTQCSQFL 122

Query: 127 IENGA 131
                
Sbjct: 123 YGVQE 127

>d1ycsb1 d.211.1.1 (B:327-456) 53BP2 {Human (Homo sapiens) [TaxId: 9606]} Length = 130

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 53BP2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.7 bits (86), Expect = 2e-04
 Identities = 13/64 (20%), Positives = 25/64 (39%), Gaps = 1/64 (1%)

Query: 35  GWTPLHIGARKGDIKLVKQLLDEGMDVNVAAWGPKSKGVTPLHLAAQGGHLEVMDVLLER 94
           GWTPLH  A   ++++ K L++ G  V    +    +         + G+ +    L   
Sbjct: 67  GWTPLHCAASCNNVQVCKFLVESGAAVFAMTYSDM-QTAADKCEEMEEGYTQCSQFLYGV 125

Query: 95  GADI 98
              +
Sbjct: 126 QEKM 129

>d1ycsb1 d.211.1.1 (B:327-456) 53BP2 {Human (Homo sapiens) [TaxId: 9606]} Length = 130

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 53BP2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 36.2 bits (82), Expect = 8e-04
 Identities = 21/120 (17%), Positives = 36/120 (30%), Gaps = 32/120 (26%)

Query: 74  TPLHLAAQGGHLEVMDVLLERGADIDARTKGA---------------------------- 105
             L  ++  G  +++  ++    D                                    
Sbjct: 3   ALLLDSSLEGEFDLVQRIIYEVDDPSLPNDEGITALHNAVCAGHTEIVKFLVQFGVNVNA 62

Query: 106 ---CGWTPLHTAAKERKKEAVRFLIENGAFLPDDINDSRFNPPLHYCPSLEWAYEEMMRF 162
               GWTPLH AA     +  +FL+E+GA     +  S        C  +E  Y +  +F
Sbjct: 63  ADSDGWTPLHCAASCNNVQVCKFLVESGAA-VFAMTYSDMQTAADKCEEMEEGYTQCSQF 121

>d1ihba_ d.211.1.1 (A:) p18ink4C(ink6) {Human (Homo sapiens) [TaxId: 9606]} Length = 156

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: p18ink4C(ink6)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.6 bits (98), Expect = 6e-06
 Identities = 9/39 (23%), Positives = 16/39 (41%)

Query: 74  TPLHLAAQGGHLEVMDVLLERGADIDARTKGACGWTPLH 112
             L  AA  G LE +  LL+   +++A+         + 
Sbjct: 3   NELASAAARGDLEQLTSLLQNNVNVNAQNGFGRTALQVM 41

>d1ihba_ d.211.1.1 (A:) p18ink4C(ink6) {Human (Homo sapiens) [TaxId: 9606]} Length = 156

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: p18ink4C(ink6)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.7 bits (88), Expect = 1e-04
 Identities = 9/26 (34%), Positives = 12/26 (46%)

Query: 70  SKGVTPLHLAAQGGHLEVMDVLLERG 95
            KG T   LA   G  EV+ ++   G
Sbjct: 131 HKGDTACDLARLYGRNEVVSLMQANG 156

>d1ihba_ d.211.1.1 (A:) p18ink4C(ink6) {Human (Homo sapiens) [TaxId: 9606]} Length = 156

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: p18ink4C(ink6)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 36.0 bits (81), Expect = 0.001
 Identities = 7/28 (25%), Positives = 10/28 (35%)

Query: 103 KGACGWTPLHTAAKERKKEAVRFLIENG 130
           +   G T    A    + E V  +  NG
Sbjct: 129 RNHKGDTACDLARLYGRNEVVSLMQANG 156

>d1ihba_ d.211.1.1 (A:) p18ink4C(ink6) {Human (Homo sapiens) [TaxId: 9606]} Length = 156

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: p18ink4C(ink6)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 35.2 bits (79), Expect = 0.002
 Identities = 8/28 (28%), Positives = 14/28 (50%)

Query: 37 TPLHIGARKGDIKLVKQLLDEGMDVNVA 64
            L   A +GD++ +  LL   ++VN  
Sbjct: 3  NELASAAARGDLEQLTSLLQNNVNVNAQ 30

>d1awcb_ d.211.1.1 (B:) GA bindinig protein (GABP) beta 1 {Mouse (Mus musculus) [TaxId: 10090]} Length = 153

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: GA bindinig protein (GABP) beta 1
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 41.8 bits (96), Expect = 1e-05
 Identities = 8/39 (20%), Positives = 13/39 (33%)

Query: 74  TPLHLAAQGGHLEVMDVLLERGADIDARTKGACGWTPLH 112
             L  AA+ G  + + +L+  GA       G        
Sbjct: 4   KKLLEAARAGQDDEVRILMANGAPFTTDWLGTSPLHLAA 42

>d1awcb_ d.211.1.1 (B:) GA bindinig protein (GABP) beta 1 {Mouse (Mus musculus) [TaxId: 10090]} Length = 153

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: GA bindinig protein (GABP) beta 1
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 36.8 bits (83), Expect = 6e-04
 Identities = 8/31 (25%), Positives = 10/31 (32%)

Query: 37 TPLHIGARKGDIKLVKQLLDEGMDVNVAAWG 67
            L   AR G    V+ L+  G        G
Sbjct: 4  KKLLEAARAGQDDEVRILMANGAPFTTDWLG 34

>d1awcb_ d.211.1.1 (B:) GA bindinig protein (GABP) beta 1 {Mouse (Mus musculus) [TaxId: 10090]} Length = 153

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: GA bindinig protein (GABP) beta 1
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 36.4 bits (82), Expect = 9e-04
 Identities = 14/61 (22%), Positives = 27/61 (44%), Gaps = 2/61 (3%)

Query: 66  WGPKSKGVTPLHLAAQGGHLEVMDVLLERGADIDARTKGACGWTPLHTAAKERKKEAVRF 125
                  +T LH A +  H EV+++L++ GAD+  ++K     T    +     ++    
Sbjct: 94  NAKDMLKMTALHWATEHNHQEVVELLIKYGADVHTQSK--FCKTAFDISIDNGNEDLAEI 151

Query: 126 L 126
           L
Sbjct: 152 L 152

>d1awcb_ d.211.1.1 (B:) GA bindinig protein (GABP) beta 1 {Mouse (Mus musculus) [TaxId: 10090]} Length = 153

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: GA bindinig protein (GABP) beta 1
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 35.6 bits (80), Expect = 0.001
 Identities = 11/57 (19%), Positives = 24/57 (42%), Gaps = 4/57 (7%)

Query: 35  GWTPLHIGARKGDIKLVKQLLDEGMDVNVAAWGPKSKGVTPLHLAAQGGHLEVMDVL 91
             T LH        ++V+ L+  G DV+  +        T   ++   G+ ++ ++L
Sbjct: 100 KMTALHWATEHNHQEVVELLIKYGADVHTQS----KFCKTAFDISIDNGNEDLAEIL 152

>d1bi7b_ d.211.1.1 (B:) Cell cycle inhibitor p16ink4A {Human (Homo sapiens) [TaxId: 9606]} Length = 125

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Cell cycle inhibitor p16ink4A
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 36.9 bits (83), Expect = 4e-04
 Identities = 18/123 (14%), Positives = 37/123 (30%), Gaps = 27/123 (21%)

Query: 33  DRGWTPLHIGARKGDIKLVKQLLDEGMDVNVAAWGPKSKGVTPLHLAAQGGHLEVMDVLL 92
           +     L   A +G ++ V+ LL+ G + N      +      +  +A+   L ++    
Sbjct: 1   EPSADWLATAAARGRVEEVRALLEAGANPNAPNSYGRRPIQVMMMGSARVAELLLLHGAE 60

Query: 93  ERGADIDAR---------------------------TKGACGWTPLHTAAKERKKEAVRF 125
              AD                                + A G  P+  A +   ++  R+
Sbjct: 61  PNCADPATLTRPVHDAAREGFLDTLVVLHRAGARLDVRDAWGRLPVDLAEELGHRDVARY 120

Query: 126 LIE 128
           L  
Sbjct: 121 LRA 123

>d1bd8a_ d.211.1.1 (A:) Cell cycle inhibitor p19ink4D {Human (Homo sapiens) [TaxId: 9606]} Length = 156

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Cell cycle inhibitor p19ink4D
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 35.9 bits (81), Expect = 0.001
 Identities = 20/66 (30%), Positives = 34/66 (51%), Gaps = 5/66 (7%)

Query: 28  VIDTDDRGWTPLHIGARKGDIKLVKQLLDEGMDVNVAAWGPKSKGVTPLHLAAQGGHLEV 87
           V   D  G  P+H+  ++G   +V  L  E  D++       ++G+TPL LA Q G  ++
Sbjct: 94  VNVPDGTGALPIHLAVQEGHTAVVSFLAAES-DLHRRD----ARGLTPLELALQRGAQDL 148

Query: 88  MDVLLE 93
           +D+L  
Sbjct: 149 VDILQG 154

>d1bd8a_ d.211.1.1 (A:) Cell cycle inhibitor p19ink4D {Human (Homo sapiens) [TaxId: 9606]} Length = 156

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Cell cycle inhibitor p19ink4D
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 35.6 bits (80), Expect = 0.002
 Identities = 9/36 (25%), Positives = 14/36 (38%), Gaps = 2/36 (5%)

Query: 93  ERGADIDARTKGACGWTPLHTAAKERKKEAVRFLIE 128
              +D+  R     G TPL  A +   ++ V  L  
Sbjct: 121 AAESDLHRRDA--RGLTPLELALQRGAQDLVDILQG 154

>d1bd8a_ d.211.1.1 (A:) Cell cycle inhibitor p19ink4D {Human (Homo sapiens) [TaxId: 9606]} Length = 156

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Cell cycle inhibitor p19ink4D
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 34.4 bits (77), Expect = 0.004
 Identities = 12/43 (27%), Positives = 17/43 (39%), Gaps = 3/43 (6%)

Query: 71  KGVTPLHLAAQGGHLEVMDVLLER-GADIDARTKGACGWTPLH 112
           +    L  AA  G ++ +  LL R     DA  +   G T L 
Sbjct: 1   RAGDRLSGAAARGDVQEVRRLLHRELVHPDALNR--FGKTALQ 41

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	210
d1myoa_	118	Myotrophin {Rat (Rattus norvegicus) [TaxId: 10116]	99.95
d1ycsb1	130	53BP2 {Human (Homo sapiens) [TaxId: 9606]}	99.94
d1bi7b_	125	Cell cycle inhibitor p16ink4A {Human (Homo sapiens	99.94
d1uoha_	223	26S proteasome non-ATPase regulatory subunit 10, g	99.93
d1oy3d_	255	Transcription factor inhibitor I-kappa-B-beta, IKB	99.91
d1bd8a_	156	Cell cycle inhibitor p19ink4D {Human (Homo sapiens	99.91
d1k1aa_	228	bcl-3 {Human (Homo sapiens) [TaxId: 9606]}	99.91
d1uoha_	223	26S proteasome non-ATPase regulatory subunit 10, g	99.91
d2fo1e1	277	Lin-12 {Caenorhabditis elegans [TaxId: 6239]}	99.9
d1ixva_	229	26S proteasome non-ATPase regulatory subunit 10, g	99.9
d1ot8a_	209	Neurogenic locus notch receptor domain {Fruit fly	99.9
d1dcqa1	154	Pyk2-associated protein beta {Mouse (Mus musculus)	99.89
d1s70b_	291	Myosin phosphatase targeting subunit 1, MYPT1 {Chi	99.89
d1sw6a_	301	Swi6 ankyrin-repeat fragment {Baker's yeast (Sacch	99.89
d1iknd_	221	I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606	99.89
d1awcb_	153	GA bindinig protein (GABP) beta 1 {Mouse (Mus musc	99.88
d1n11a_	408	Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]}	99.88
d1ihba_	156	p18ink4C(ink6) {Human (Homo sapiens) [TaxId: 9606]	99.88
d1dcqa1	154	Pyk2-associated protein beta {Mouse (Mus musculus)	99.87
d1oy3d_	255	Transcription factor inhibitor I-kappa-B-beta, IKB	99.85
d1ihba_	156	p18ink4C(ink6) {Human (Homo sapiens) [TaxId: 9606]	99.85
d1ixva_	229	26S proteasome non-ATPase regulatory subunit 10, g	99.85
d2ajaa1	346	Hypothetical protein LPG2416 {Legionella pneumophi	99.84
d1bi7b_	125	Cell cycle inhibitor p16ink4A {Human (Homo sapiens	99.83
d1ycsb1	130	53BP2 {Human (Homo sapiens) [TaxId: 9606]}	99.82
d1bd8a_	156	Cell cycle inhibitor p19ink4D {Human (Homo sapiens	99.82
d1s70b_	291	Myosin phosphatase targeting subunit 1, MYPT1 {Chi	99.8
d1myoa_	118	Myotrophin {Rat (Rattus norvegicus) [TaxId: 10116]	99.8
d1wdya_	285	RNase L, 2-5a-dependent ribonuclease {Human (Homo	99.8
d1n11a_	408	Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]}	99.8
d1awcb_	153	GA bindinig protein (GABP) beta 1 {Mouse (Mus musc	99.79
d1ot8a_	209	Neurogenic locus notch receptor domain {Fruit fly	99.78
d1iknd_	221	I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606	99.75
d1wdya_	285	RNase L, 2-5a-dependent ribonuclease {Human (Homo	99.73
d2ajaa1	346	Hypothetical protein LPG2416 {Legionella pneumophi	99.71
d2fo1e1	277	Lin-12 {Caenorhabditis elegans [TaxId: 6239]}	99.67
d1k1aa_	228	bcl-3 {Human (Homo sapiens) [TaxId: 9606]}	99.62
d1sw6a_	301	Swi6 ankyrin-repeat fragment {Baker's yeast (Sacch	99.53

>d1myoa_ d.211.1.1 (A:) Myotrophin {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myotrophin
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.95  E-value=8.2e-28  Score=162.64  Aligned_cols=107  Identities=33%  Similarity=0.438  Sum_probs=102.4

Q ss_pred             ChHHHHHHHcCCHHHHHHHHHCCCCccccccCCCCCCCcHHHHHHHCCcHHHHHHHHHcCCCCCcccCCCCCChHHHHHH
Q 028370           36 WTPLHIGARKGDIKLVKQLLDEGMDVNVAAWGPKSKGVTPLHLAAQGGHLEVMDVLLERGADIDARTKGACGWTPLHTAA  115 (210)
Q Consensus        36 ~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~~g~tpL~~A~  115 (210)
                      .|||++|+++|+.++++.|+++|++++..    +..|+||||+|+..|+.+++++|++.|++++.++..  |+||||+|+
T Consensus         3 ~tpL~~A~~~g~~~~v~~Ll~~g~d~n~~----~~~g~t~lh~A~~~~~~~~~~~ll~~g~din~~d~~--g~tpLh~A~   76 (118)
T d1myoa_           3 DKEFMWALKNGDLDEVKDYVAKGEDVNRT----LEGGRKPLHYAADCGQLEILEFLLLKGADINAPDKH--HITPLLSAV   76 (118)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHTTTCCCCCC----SSSSCCTTHHHHHHSTTTHHHHHHHSSCTTTCCSSS--CSCHHHHHH
T ss_pred             ChHHHHHHHCCCHHHHHHHHHhhhccccc----cccccccccccccccccccccccccccceeeecccc--cccchhhhh
Confidence            48999999999999999999999999988    899999999999999999999999999999998877  999999999


Q ss_pred             hcCCHHHHHHHHHcCCCCCCCCCCCCCCCcccccc
Q 028370          116 KERKKEAVRFLIENGAFLPDDINDSRFNPPLHYCP  150 (210)
Q Consensus       116 ~~g~~~~v~~Ll~~g~~~~~~~~~~~g~t~l~~a~  150 (210)
                      ..|+.+++++|+++|+++  +.+|..|.||||+|.
T Consensus        77 ~~~~~~~v~~Ll~~Gad~--~~~d~~G~t~l~~a~  109 (118)
T d1myoa_          77 YEGHVSCVKLLLSKGADK--TVKGPDGLTALEATD  109 (118)
T ss_dssp             TTTCCHHHHHHHTTCCCS--SSSSSSTCCCCCTCS
T ss_pred             hcCchhhhhhhhcccccc--eeeCCCCCCHHHHHh
Confidence            999999999999999966  899999999999995

>d1ycsb1 d.211.1.1 (B:327-456) 53BP2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 53BP2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.94  E-value=1e-26  Score=159.83  Aligned_cols=123  Identities=28%  Similarity=0.480  Sum_probs=110.2

Q ss_pred             hHHHHHHHcCCHHHHHHHHHCCCCccccccCCCCCCCcHHHHHHHCCcHHHHHHHHHcCCCCCcccCCCCCChHHHHHHh
Q 028370           37 TPLHIGARKGDIKLVKQLLDEGMDVNVAAWGPKSKGVTPLHLAAQGGHLEVMDVLLERGADIDARTKGACGWTPLHTAAK  116 (210)
Q Consensus        37 t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~~g~tpL~~A~~  116 (210)
                      ++|+.|+..|+.+++++|+++|++++..    |..|+||||+|+..++.+++++|++.|++++..+.+  |+||||+|+.
T Consensus         3 ~lL~~A~~~G~~~~v~~Ll~~g~d~n~~----d~~g~t~Lh~A~~~~~~~~~~~ll~~g~~~~~~d~~--g~tpLh~A~~   76 (130)
T d1ycsb1           3 ALLLDSSLEGEFDLVQRIIYEVDDPSLP----NDEGITALHNAVCAGHTEIVKFLVQFGVNVNAADSD--GWTPLHCAAS   76 (130)
T ss_dssp             HHHHHHHHHTCHHHHHHHTSTTSSCCCC----CTTSCCHHHHHHHHTCHHHHHHHHHHTCCTTCCCTT--CCCHHHHHHH
T ss_pred             HHHHHHHHcCCHHHHHHHHHcCCCcccc----cccccccccccccccccccccccccccccccccccc--Ccccccccch
Confidence            6899999999999999999999999988    999999999999999999999999999999998887  9999999999


Q ss_pred             cCCHHHHHHHHHcCCCCCCCCCC-CCCCCcccccccchHHHHHHHHHhhhhh
Q 028370          117 ERKKEAVRFLIENGAFLPDDIND-SRFNPPLHYCPSLEWAYEEMMRFQRESF  167 (210)
Q Consensus       117 ~g~~~~v~~Ll~~g~~~~~~~~~-~~g~t~l~~a~~~~~~~~~~~~~l~~~~  167 (210)
                      .|+.+++++|+++|+++  +..+ ..|+||++++.....++.+++++|....
T Consensus        77 ~g~~~~v~~Ll~~ga~v--~~~~~~~~~~~~~~~~a~~~g~~eiv~~L~~~~  126 (130)
T d1ycsb1          77 CNNVQVCKFLVESGAAV--FAMTYSDMQTAADKCEEMEEGYTQCSQFLYGVQ  126 (130)
T ss_dssp             TTCHHHHHHHHHTTCCT--TCCCSSSCCCHHHHCCSSSTTCCCHHHHHHHHH
T ss_pred             hhHHHHHHHHHHcCCCc--ccccCCCCCCHHHHHHHHHcChHHHHHHHHhHH
Confidence            99999999999999976  5444 4688988777655666678898887654

>d1bi7b_ d.211.1.1 (B:) Cell cycle inhibitor p16ink4A {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Cell cycle inhibitor p16ink4A
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.94  E-value=6.8e-27  Score=159.65  Aligned_cols=122  Identities=25%  Similarity=0.367  Sum_probs=109.3

Q ss_pred             CCChHHHHHHHcCCHHHHHHHHHCCCCccccccCCCCCCCcHHHHHHHCCcHHHHHHHHHcCCCCCcccCCCCCChHHHH
Q 028370           34 RGWTPLHIGARKGDIKLVKQLLDEGMDVNVAAWGPKSKGVTPLHLAAQGGHLEVMDVLLERGADIDARTKGACGWTPLHT  113 (210)
Q Consensus        34 ~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~~g~tpL~~  113 (210)
                      .+.++||+|+++|+.+++++|+++|++++..    +..|.||+|+|+ .|+.+++++|++.|++++..+... +.||||+
T Consensus         2 p~~~~L~~Aa~~G~~~~v~~Ll~~gad~n~~----~~~g~t~l~~a~-~g~~~~v~~Ll~~ga~~~~~~~~~-~~~~L~~   75 (125)
T d1bi7b_           2 PSADWLATAAARGRVEEVRALLEAGANPNAP----NSYGRRPIQVMM-MGSARVAELLLLHGAEPNCADPAT-LTRPVHD   75 (125)
T ss_dssp             CSTTHHHHHHHHTCHHHHHHHHTTTCCTTCC----CSSSCCTTTSSC-TTCHHHHHHHHTTTCCCCCCCTTT-CCCHHHH
T ss_pred             CChhHHHHHHHCCCHHHHHHHHHcCCccccc----cccccccccccc-cccccccccccccccccccccccc-ccccccc
Confidence            3568999999999999999999999999988    899999999774 799999999999999999887762 4579999


Q ss_pred             HHhcCCHHHHHHHHHcCCCCCCCCCCCCCCCcccccccchHHHHHHHHHhhh
Q 028370          114 AAKERKKEAVRFLIENGAFLPDDINDSRFNPPLHYCPSLEWAYEEMMRFQRE  165 (210)
Q Consensus       114 A~~~g~~~~v~~Ll~~g~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~~~l~~  165 (210)
                      |+..|+.+++++|+++|+++  +.+|..|.||+|+|+.  .+..+++++|..
T Consensus        76 A~~~g~~~~v~~Ll~~ga~~--~~~d~~G~T~l~~A~~--~g~~~~v~~Lls  123 (125)
T d1bi7b_          76 AAREGFLDTLVVLHRAGARL--DVRDAWGRLPVDLAEE--LGHRDVARYLRA  123 (125)
T ss_dssp             HHHHTCHHHHHHHHHHTCCS--SCCCTTCCCHHHHHHH--HTCHHHHHHHSS
T ss_pred             cccccccccccccccccccc--ccccCCCCCHHHHHHH--cCCHHHHHHHHh
Confidence            99999999999999999966  8999999999999994  456888888864

>d1uoha_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.93  E-value=2.7e-25  Score=165.92  Aligned_cols=129  Identities=27%  Similarity=0.418  Sum_probs=118.1

Q ss_pred             hhhcccCCCCChHHHHHHHcCCHHHHHHHHHCCCCccccccCCCCCCCcHHHHHHHCCcHHHHHHHHHcCCCCCcccCCC
Q 028370           26 RSVIDTDDRGWTPLHIGARKGDIKLVKQLLDEGMDVNVAAWGPKSKGVTPLHLAAQGGHLEVMDVLLERGADIDARTKGA  105 (210)
Q Consensus        26 ~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~  105 (210)
                      .+++.+|..|.||||+|+..|+.+++++|+++|++++..    +..|.||||+|+..++..++++|...+.+++..+.+ 
T Consensus        94 ~d~~~~d~~g~tpL~~A~~~~~~e~~~~Ll~~g~d~~~~----~~~~~t~L~~a~~~~~~~~~~~L~~~~~~i~~~d~~-  168 (223)
T d1uoha_          94 AQVNAVNQNGCTPLHYAASKNRHEIAVMLLEGGANPDAK----DHYEATAMHRAAAKGNLKMIHILLYYKASTNIQDTE-  168 (223)
T ss_dssp             CCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCTTCC----CTTSCCHHHHHHHTTCHHHHHHHHHTTCCSCCCCTT-
T ss_pred             ceeEeeCCCCCchhhHHHHcCCHHHHHHHHHCCCCCCCc----CCCCCccchhhhhcCCcchhhhhccccceeeeccCC-
Confidence            457789999999999999999999999999999999888    899999999999999999999999999999999877 


Q ss_pred             CCChHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCCCCCcccccccchHHHHHHHHHhhh
Q 028370          106 CGWTPLHTAAKERKKEAVRFLIENGAFLPDDINDSRFNPPLHYCPSLEWAYEEMMRFQRE  165 (210)
Q Consensus       106 ~g~tpL~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~~~l~~  165 (210)
                       |.||||+|+..|+.+++++|+++|+++  +.+|.+|+||||+|..   +..+++++|.+
T Consensus       169 -g~TpL~~Aa~~g~~~~v~~LL~~Gad~--~~~d~~g~tpl~~A~~---~~~~i~~~Ll~  222 (223)
T d1uoha_         169 -GNTPLHLACDEERVEEAKLLVSQGASI--YIENKEEKTPLQVAKG---GLGLILKRMVE  222 (223)
T ss_dssp             -CCCHHHHHHHTTCHHHHHHHHHTTCCS--CCCCTTSCCHHHHCCT---THHHHHHHHHC
T ss_pred             -CCceeccccccCcHHHHHHHHHCCCCC--CCCCCCCCCHHHHHHC---CCHHHHhcccC
Confidence             999999999999999999999999965  8999999999999952   44678877753

>d1oy3d_ d.211.1.1 (D:) Transcription factor inhibitor I-kappa-B-beta, IKBB {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Transcription factor inhibitor I-kappa-B-beta, IKBB
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.91  E-value=4.4e-24  Score=161.71  Aligned_cols=132  Identities=29%  Similarity=0.338  Sum_probs=86.8

Q ss_pred             hcccCCCCChHHHHHHHcCCHHHHHHHHHCCCCccccccCCCCCCCcHHHHHHHCCcHHHHHHHHHcCCCCCc-------
Q 028370           28 VIDTDDRGWTPLHIGARKGDIKLVKQLLDEGMDVNVAAWGPKSKGVTPLHLAAQGGHLEVMDVLLERGADIDA-------  100 (210)
Q Consensus        28 ~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~-------  100 (210)
                      ++.+|..|.||||+|+..|+.++++.|+++|++++..    |..|.||||+|+..++.+++++|++.+.....       
T Consensus        38 i~~~~~~g~TpL~~A~~~g~~~iv~~Ll~~ga~i~~~----d~~g~tpL~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~  113 (255)
T d1oy3d_          38 LDLQNDLGQTALHLAAILGEASTVEKLYAAGAGVLVA----ERGGHTALHLACRVRAHTCACVLLQPRPSHPRDASDTYL  113 (255)
T ss_dssp             GGCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCSSCC----CTTSCCHHHHHTTTTCHHHHHHHSSSCCSSCCCC-----
T ss_pred             ccCcCCCCCCccchHHhhccccccccccccccccccc----ccccchhhhhhhccCchHHHHHHHhhccchhcccchhhh
Confidence            5667889999999999999999999999999998877    66666777776666666666666543211100       


Q ss_pred             --------------------------------------ccCCCCCChHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCCC
Q 028370          101 --------------------------------------RTKGACGWTPLHTAAKERKKEAVRFLIENGAFLPDDINDSRF  142 (210)
Q Consensus       101 --------------------------------------~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~g  142 (210)
                                                            ...+..|.||||+|+..++.+++++|++.+++.. ...+..|
T Consensus       114 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~in~~d~~g~TpLh~A~~~~~~~~v~~Ll~~~~~~~-~~~~~~g  192 (255)
T d1oy3d_         114 TQSQDCTPDTSHAPAAVDSQPNPENEEEPRDEDWRLQLEAENYDGHTPLHVAVIHKDAEMVRLLRDAGADLN-KPEPTCG  192 (255)
T ss_dssp             ------------------------------CCCGGGGTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHTCCTT-CCCTTTC
T ss_pred             hHHhhhcccchHHHHHHHhhcchhHHHHHHhhhcCcccccccccCcccccccccccccccccchhccccccc-ccccccc
Confidence                                                  0012336666666666666666666666666432 3345566


Q ss_pred             CCcccccccchHHHHHHHHHhhhh
Q 028370          143 NPPLHYCPSLEWAYEEMMRFQRES  166 (210)
Q Consensus       143 ~t~l~~a~~~~~~~~~~~~~l~~~  166 (210)
                      .||||+|+..+  ..+++++|.+.
T Consensus       193 ~TpL~~A~~~~--~~~~v~~Ll~~  214 (255)
T d1oy3d_         193 RTPLHLAVEAQ--AASVLELLLKA  214 (255)
T ss_dssp             CCHHHHHHHTT--CHHHHHHHHHT
T ss_pred             ccccccccccc--HHHHHHHHHHC
Confidence            66666666333  35666666554

>d1bd8a_ d.211.1.1 (A:) Cell cycle inhibitor p19ink4D {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Cell cycle inhibitor p19ink4D
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.91  E-value=2e-24  Score=152.56  Aligned_cols=144  Identities=26%  Similarity=0.362  Sum_probs=124.2

Q ss_pred             cchhHHHHHHhhHHHhhhhcccCCCCChHHHHHHHcCCHHHHHHHHHCCCCccccccCCCCCCCcHHHHHHHCCcHHHHH
Q 028370           10 LGPFTLQRKASRKRFFRSVIDTDDRGWTPLHIGARKGDIKLVKQLLDEGMDVNVAAWGPKSKGVTPLHLAAQGGHLEVMD   89 (210)
Q Consensus        10 ~~~~~~~~~~~~~~~~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~   89 (210)
                      .|.+..+.....+ ...+++.+|..|+||||+|+. |+.+++++|++++.+++..    +..|.+|++.++..++.++++
T Consensus        12 ~g~~~~vk~lL~~-~~~~~n~~d~~g~t~L~~A~~-~~~~~v~~Ll~~~~~~~~~----~~~~~~~l~~~~~~~~~~~~~   85 (156)
T d1bd8a_          12 RGDVQEVRRLLHR-ELVHPDALNRFGKTALQVMMF-GSTAIALELLKQGASPNVQ----DTSGTSPVHDAARTGFLDTLK   85 (156)
T ss_dssp             HTCHHHHHHHHHT-TCCCTTCCCTTSCCHHHHSCT-TCHHHHHHHHHTTCCTTCC----CTTSCCHHHHHHHTTCHHHHH
T ss_pred             cCCHHHHHHHHHh-CCCCCCccCCCCCcccccccc-ccccccccccccccccccc----ccccccccccccccccccccc
Confidence            3556666555443 345678899999999999875 8899999999999999987    888999999999999999999


Q ss_pred             HHHHcCCCCCcccCCCCCChHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCCCCCcccccccchHHHHHHHHHhhhh
Q 028370           90 VLLERGADIDARTKGACGWTPLHTAAKERKKEAVRFLIENGAFLPDDINDSRFNPPLHYCPSLEWAYEEMMRFQRES  166 (210)
Q Consensus        90 ~Ll~~g~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~~~l~~~  166 (210)
                      ++++.|++++..+.+  |.||||+|+..|+.+++++|+ .|+++  +.+|..|+||||+|+..+  ..+++++|.+.
T Consensus        86 ~~l~~~~~~n~~~~~--~~t~L~~A~~~~~~~i~~~L~-~~~~~--~~~d~~G~TpL~~A~~~g--~~~iv~~Ll~h  155 (156)
T d1bd8a_          86 VLVEHGADVNVPDGT--GALPIHLAVQEGHTAVVSFLA-AESDL--HRRDARGLTPLELALQRG--AQDLVDILQGH  155 (156)
T ss_dssp             HHHHTTCCSCCCCTT--SCCHHHHHHHHTCHHHHHHHH-TTSCT--TCCCTTSCCHHHHHHHSC--CHHHHHHHHTT
T ss_pred             cccccccccccccCC--CCeeecccccccccccccccc-ccccc--cccCCCCCCHHHHHHHcC--CHHHHHHHHhh
Confidence            999999999998877  999999999999999999888 67855  889999999999999554  47899988753

>d1k1aa_ d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: bcl-3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.91  E-value=1.3e-23  Score=154.59  Aligned_cols=130  Identities=24%  Similarity=0.322  Sum_probs=110.3

Q ss_pred             hhhcccCCCCChHHHHHHHcCCHHHHHHHHHCCCCcccccc---------------------------------------
Q 028370           26 RSVIDTDDRGWTPLHIGARKGDIKLVKQLLDEGMDVNVAAW---------------------------------------   66 (210)
Q Consensus        26 ~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~---------------------------------------   66 (210)
                      .+++.+|..|+||||+|+..|+.++++.|+++|++.+....                                       
T Consensus        31 ~~in~~d~~g~TpL~~A~~~~~~~iv~~Ll~~ga~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  110 (228)
T d1k1aa_          31 RELDIYNNLRQTPLHLAVITTLPSVVRLLVTAGASPMALDRHGQTAAHLACEHRSPTCLRALLDSAAPGTLDLEARNYDG  110 (228)
T ss_dssp             CCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHSCTTSCCTTCCCTTS
T ss_pred             CCCCccCCCCCccceehhcccccccccccccccccccccccccccccccccccccccchhhhhhcccccccccccccccc
Confidence            35778899999999999999999999999999988876541                                       


Q ss_pred             ----------------------------CCCCCCCcHHHHHHHCCcHHHHHHHHHcCCCCCcccCCCCCChHHHHHHhcC
Q 028370           67 ----------------------------GPKSKGVTPLHLAAQGGHLEVMDVLLERGADIDARTKGACGWTPLHTAAKER  118 (210)
Q Consensus        67 ----------------------------~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~~g~tpL~~A~~~g  118 (210)
                                                  .....+.++++.|+..+...++++++..|.+++..+.+  |.||||+|+..|
T Consensus       111 ~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~d~~--g~t~L~~A~~~g  188 (228)
T d1k1aa_         111 LTALHVAVNTECQETVQLLLERGADIDAVDIKSGRSPLIHAVENNSLSMVQLLLQHGANVNAQMYS--GSSALHSASGRG  188 (228)
T ss_dssp             CCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCBCTT--SCBHHHHHHHHT
T ss_pred             ccccccccccccchhhhhhhccccccccccccchhhHHHHHHHhhhhhhhhhhhhhcccccccccc--CcchHHHHHHcC
Confidence                                        02335678899999999999999999999888888777  999999999999


Q ss_pred             CHHHHHHHHHcCCCCCCCCCCCCCCCcccccccchHHHHHHHH
Q 028370          119 KKEAVRFLIENGAFLPDDINDSRFNPPLHYCPSLEWAYEEMMR  161 (210)
Q Consensus       119 ~~~~v~~Ll~~g~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~~  161 (210)
                      +.+++++|+++|+++  +.+|..|.||||+|+.  .+..+++|
T Consensus       189 ~~~~v~~Ll~~Gad~--n~~d~~G~TpL~~A~~--~~~~divk  227 (228)
T d1k1aa_         189 LLPLVRTLVRSGADS--SLKNCHNDTPLMVARS--RRVIDILR  227 (228)
T ss_dssp             CHHHHHHHHHTTCCT--TCCCTTSCCTTTTCSS--HHHHHHHT
T ss_pred             CHHHHHHHHHCCCCC--CCCCCCCCCHHHHHHh--CCCccccC
Confidence            999999999999965  8899999999999994  44466653

>d1uoha_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.91  E-value=1.2e-23  Score=156.87  Aligned_cols=152  Identities=28%  Similarity=0.301  Sum_probs=97.1

Q ss_pred             hccchhHHHHHHhhHHHhhhhcccCCCCChHHHHHHHcCCHHHHHHHHHCCCCccccc----------------------
Q 028370            8 EQLGPFTLQRKASRKRFFRSVIDTDDRGWTPLHIGARKGDIKLVKQLLDEGMDVNVAA----------------------   65 (210)
Q Consensus         8 ~~~~~~~~~~~~~~~~~~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~----------------------   65 (210)
                      ..-|.+..+...... ....++.+|..|+||||+|+..|+.+++++++..+.......                      
T Consensus        11 a~~G~~~~v~~~l~~-~~~~~~~~D~~G~TpLh~Aa~~g~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~L   89 (223)
T d1uoha_          11 AYSGKLEELKESILA-DKSLATRTDQDSRTALHWACSAGHTEIVEFLLQLGVPVNDKDDAGWSPLHIAASAGRDEIVKAL   89 (223)
T ss_dssp             HHTTCHHHHHHHHHH-CGGGGGCCCTTSCCHHHHHHHHTCHHHHHHHHHHTCCSCCCCTTCCCHHHHHHHHTCHHHHHHH
T ss_pred             HHhCCHHHHHHHHHh-CCCcCcCcCCCCCCHHHHHHHhhhhcccccccccccccccccccccccccccccccccchhHHH
Confidence            344666666555543 355678899999999999999998777766665544433320                      


Q ss_pred             -------cCCCCCCCcHHHHHHHCCcHHHHHHHHHcCCCCCcccCCCCCChHHHHHHhcCCHHHHHHHHHcCCCCCCCCC
Q 028370           66 -------WGPKSKGVTPLHLAAQGGHLEVMDVLLERGADIDARTKGACGWTPLHTAAKERKKEAVRFLIENGAFLPDDIN  138 (210)
Q Consensus        66 -------~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~g~~~~~~~~  138 (210)
                             ..+|..|.||||+|+..|+.+++++|+++|++++..+.+  |.||||+|+..++.+++++|++.+.++  +..
T Consensus        90 l~~~~d~~~~d~~g~tpL~~A~~~~~~e~~~~Ll~~g~d~~~~~~~--~~t~L~~a~~~~~~~~~~~L~~~~~~i--~~~  165 (223)
T d1uoha_          90 LGKGAQVNAVNQNGCTPLHYAASKNRHEIAVMLLEGGANPDAKDHY--EATAMHRAAAKGNLKMIHILLYYKAST--NIQ  165 (223)
T ss_dssp             HHTTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTT--SCCHHHHHHHTTCHHHHHHHHHTTCCS--CCC
T ss_pred             hccCceeEeeCCCCCchhhHHHHcCCHHHHHHHHHCCCCCCCcCCC--CCccchhhhhcCCcchhhhhcccccee--eec
Confidence                   001556666666666666666666666666666666555  666666666666666666666666644  566


Q ss_pred             CCCCCCcccccccchHHHHHHHHHhhhh
Q 028370          139 DSRFNPPLHYCPSLEWAYEEMMRFQRES  166 (210)
Q Consensus       139 ~~~g~t~l~~a~~~~~~~~~~~~~l~~~  166 (210)
                      |..|.||||+|+..+  ..+++++|.+.
T Consensus       166 d~~g~TpL~~Aa~~g--~~~~v~~LL~~  191 (223)
T d1uoha_         166 DTEGNTPLHLACDEE--RVEEAKLLVSQ  191 (223)
T ss_dssp             CTTCCCHHHHHHHTT--CHHHHHHHHHT
T ss_pred             cCCCCceeccccccC--cHHHHHHHHHC
Confidence            666666666666433  35666666554

>d2fo1e1 d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Lin-12
species: Caenorhabditis elegans [TaxId: 6239]

Probab=99.90  E-value=1.1e-24  Score=166.67  Aligned_cols=128  Identities=25%  Similarity=0.353  Sum_probs=94.8

Q ss_pred             hhcccCCCCChHHHHHHHcCCHHHHHHHHHCCCCccccccCCCCCCCcHH------------------------------
Q 028370           27 SVIDTDDRGWTPLHIGARKGDIKLVKQLLDEGMDVNVAAWGPKSKGVTPL------------------------------   76 (210)
Q Consensus        27 ~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~g~t~L------------------------------   76 (210)
                      +++.+|..|+||||+|++.|+.+++++|+++|++++..    +..|.||+                              
T Consensus        66 dvn~~d~~G~TpLh~A~~~g~~~iv~~Ll~~Gad~n~~----~~~g~t~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~  141 (277)
T d2fo1e1          66 DVNAMDCDENTPLMLAVLARRRRLVAYLMKAGADPTIY----NKSERSALHQAAANRDFGMMVYMLNSTKLKGDIEELDR  141 (277)
T ss_dssp             CTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCSCCC----CTTCCCHHHHHHHTTCHHHHHHHTTSHHHHHTTSCCCT
T ss_pred             CccccCCCCCeeeccccccccccccccccccccccccc----cccccccccchhhhcchhhhhhhhhccccccccccccc
Confidence            56778899999999999999999999999999988876    44444444                              


Q ss_pred             --------------------------------------------------HHHHHCCcHHHHHHHH-HcCCCCCcccCCC
Q 028370           77 --------------------------------------------------HLAAQGGHLEVMDVLL-ERGADIDARTKGA  105 (210)
Q Consensus        77 --------------------------------------------------~~A~~~~~~~~v~~Ll-~~g~~~~~~~~~~  105 (210)
                                                                        |+++..++.+++++++ ..+.+.+.++.. 
T Consensus       142 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~~~~~~~~~~~~~~l~~~~~~~~~~d~~-  220 (277)
T d2fo1e1         142 NGMTALMIVAHNEGRDQVASAKLLVEKGAKVDYDGAARKDSEKYKGRTALHYAAQVSNMPIVKYLVGEKGSNKDKQDED-  220 (277)
T ss_dssp             TSCCHHHHHHHSCSTTHHHHHHHHHHHTCCSSCCSGGGTSSSSCCCCCTHHHHHSSCCHHHHHHHHHHSCCCTTCCCTT-
T ss_pred             ccchhHHHHHhcccccccccccccccccccccccccccccccccCCCCccccccccccccccccccccccccccccCCC-
Confidence                                                              4444444444444333 334444444444 


Q ss_pred             CCChHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCCCCCcccccccchHHHHHHHHHhh
Q 028370          106 CGWTPLHTAAKERKKEAVRFLIENGAFLPDDINDSRFNPPLHYCPSLEWAYEEMMRFQR  164 (210)
Q Consensus       106 ~g~tpL~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~~~l~  164 (210)
                       |.||||+|+..|+.+++++|+++|+++  +.+|..|.||||+|+..+  ..+++++|.
T Consensus       221 -g~tpL~~A~~~g~~~iv~~Ll~~gadi--n~~d~~G~T~L~~A~~~~--~~~iv~lL~  274 (277)
T d2fo1e1         221 -GKTPIMLAAQEGRIEVVMYLIQQGASV--EAVDATDHTARQLAQANN--HHNIVDIFD  274 (277)
T ss_dssp             -CCCHHHHHHHHTCHHHHHHHHHTTCCS--SCCCSSSCCHHHHHHHTT--CHHHHHHHH
T ss_pred             -CCCHHHHHHHcCCHHHHHHHHHCcCCC--CCcCCCCCCHHHHHHHcC--CHHHHHHHH
Confidence             889999999999999999999999865  788889999999998544  478887765

>d1ixva_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.90  E-value=4e-23  Score=153.99  Aligned_cols=53  Identities=19%  Similarity=0.208  Sum_probs=42.2

Q ss_pred             chhHHHHHHhhHHHhhhhcccCCCCChHHHHHHHcCCHHHHHHHHHCCCCcccc
Q 028370           11 GPFTLQRKASRKRFFRSVIDTDDRGWTPLHIGARKGDIKLVKQLLDEGMDVNVA   64 (210)
Q Consensus        11 ~~~~~~~~~~~~~~~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~   64 (210)
                      |.+..+.... +.....++.+|.+|+||||+|+..|+.+++++|+++|++++..
T Consensus        11 g~~~~v~~Ll-~~~~~~~~~~d~~G~TpL~~A~~~g~~~iv~~Ll~~ga~~~~~   63 (229)
T d1ixva_          11 NEFFKVQELL-HSKPSLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKMENVNLD   63 (229)
T ss_dssp             TCHHHHHHHH-HHCGGGTTCCCTTSCCHHHHHHHTTCHHHHHHHHTTCTTCCGG
T ss_pred             CCHHHHHHHH-HcCCCcccccCCCCCCHHHHHHHcCCccccchhhhhhcccccc
Confidence            4444444433 3445678899999999999999999999999999999988643

>d1ot8a_ d.211.1.1 (A:) Neurogenic locus notch receptor domain {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Neurogenic locus notch receptor domain
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.90  E-value=1.4e-23  Score=154.31  Aligned_cols=132  Identities=31%  Similarity=0.353  Sum_probs=116.2

Q ss_pred             hhhcc-cCCCCChHHHHHHHcCCHHHHHHHHHCCCCcccccc--------------------------------------
Q 028370           26 RSVID-TDDRGWTPLHIGARKGDIKLVKQLLDEGMDVNVAAW--------------------------------------   66 (210)
Q Consensus        26 ~~~~~-~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~--------------------------------------   66 (210)
                      .+++. .|.+|.||||+||++|+.+++++|++.|++++....                                      
T Consensus        13 ~din~~~d~~G~t~L~~A~~~g~~e~v~~Ll~~g~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   92 (209)
T d1ot8a_          13 AELNATMDKTGETSLHLAARFARADAAKRLLDAGADANSQDNTGRTPLHAAVAADAMGVFQILLRNRATNLNARMHDGTT   92 (209)
T ss_dssp             HHHHHHHHHHCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHTCTTCCTTCCCTTCCC
T ss_pred             CCcCcCcCCCCCCHHHHHHHcCCHHHHHHHHhhccccccccccccccccccccccccccccccccccccccccccccccc
Confidence            34665 589999999999999999999999999998876431                                      


Q ss_pred             -------------------------CCCCCCCcHHHHHHHCCcHHHHHHHHHcCCCCCcccCCCCCChHHHHHHhcCCHH
Q 028370           67 -------------------------GPKSKGVTPLHLAAQGGHLEVMDVLLERGADIDARTKGACGWTPLHTAAKERKKE  121 (210)
Q Consensus        67 -------------------------~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~~g~tpL~~A~~~g~~~  121 (210)
                                               .++..|.|||++++..+...+++.++..+.+++..+..  |.||||+|+..|+.+
T Consensus        93 ~~~~~~~~~~~~~~~~L~~~~~~~~~~~~~~~t~l~~~~~~~~~~~~~~l~~~~~~~~~~d~~--g~TpL~~A~~~g~~~  170 (209)
T d1ot8a_          93 PLILAARLAIEGMVEDLITADADINAADNSGKTALHWAAAVNNTEAVNILLMHHANRDAQDDK--DETPLFLAAREGSYE  170 (209)
T ss_dssp             HHHHHHHTTCTTHHHHHHHTTCCTTCBCTTSCBHHHHHHHTTCHHHHHHHHHTTCCTTCCCTT--CCCHHHHHHHTTCHH
T ss_pred             cccccccccchhhhhhhhhhcccccccCCCCCCcchhhcccCcceeeeeeccccccccccccc--cccccchhccccHHH
Confidence                                     14667889999999999999999999999999988877  999999999999999


Q ss_pred             HHHHHHHcCCCCCCCCCCCCCCCcccccccchHHHHHHHHHh
Q 028370          122 AVRFLIENGAFLPDDINDSRFNPPLHYCPSLEWAYEEMMRFQ  163 (210)
Q Consensus       122 ~v~~Ll~~g~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~~~l  163 (210)
                      ++++|+++|+++  +.+|..|.||||+|+..+  ..+++++|
T Consensus       171 ~v~~Ll~~gad~--n~~d~~g~Tpl~~A~~~~--~~~iv~lL  208 (209)
T d1ot8a_         171 ASKALLDNFANR--EITDHMDRLPRDVASERL--HHDIVRLL  208 (209)
T ss_dssp             HHHHHHHTTCCT--TCCCTTSCCHHHHHHHTT--CHHHHHHH
T ss_pred             HHHHHHHCCCCC--CCcCCCCCCHHHHHHHcC--CHHHHhhc
Confidence            999999999965  889999999999999554  47888876

>d1dcqa1 d.211.1.1 (A:369-522) Pyk2-associated protein beta {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Pyk2-associated protein beta
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.89  E-value=9.1e-23  Score=143.64  Aligned_cols=127  Identities=23%  Similarity=0.322  Sum_probs=104.1

Q ss_pred             hHHHHHHHcCCHHHHHHHHHCCCCcccccc--CCCCCCCcHHHHHHH---CCcHHHHHHHHHcCCCCCcccCCCCCChHH
Q 028370           37 TPLHIGARKGDIKLVKQLLDEGMDVNVAAW--GPKSKGVTPLHLAAQ---GGHLEVMDVLLERGADIDARTKGACGWTPL  111 (210)
Q Consensus        37 t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~--~~~~~g~t~L~~A~~---~~~~~~v~~Ll~~g~~~~~~~~~~~g~tpL  111 (210)
                      ..|+.|++.+++..+..++..|.+++....  ..+..|+||||+|+.   .++.+++++|+++|++++.++.+  |+|||
T Consensus         8 ~~L~~Av~~~dl~~l~~~~~~g~d~~~~~~~~~~~~~g~t~Lh~A~~~~~~~~~~iv~~Ll~~gadin~~d~~--g~TpL   85 (154)
T d1dcqa1           8 HSLCEAVKTRDIFGLLQAYADGVDLTEKIPLANGHEPDETALHLAVRSVDRTSLHIVDFLVQNSGNLDKQTGK--GSTAL   85 (154)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHTTCCTTSBCCCSSCSSTTCBHHHHHHHHCCTTTHHHHHHHHHHCSCTTCCCTT--CCCHH
T ss_pred             HHHHHHHHhCCHHHHHHHHHcCCCcCCCCCcccCCCCCCchHHHHHHhcCCCCHHHHHHHHHcCCChhhhhhh--hcccc
Confidence            346778899999999999998887664321  125668899999997   46788999999999999988877  99999


Q ss_pred             HHHHhcCCHHHHHHHHHcCCCCCCCCCCCCCCCcccccccchHHHHHHHHHhhhhhhc
Q 028370          112 HTAAKERKKEAVRFLIENGAFLPDDINDSRFNPPLHYCPSLEWAYEEMMRFQRESFSA  169 (210)
Q Consensus       112 ~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~~~l~~~~~~  169 (210)
                      |+|+..|+.+++++|+++|+++  +.+|..|.||||+|+..  +..+++++|.+....
T Consensus        86 h~A~~~~~~~~v~~Ll~~gad~--~~~d~~g~tpL~~A~~~--~~~~i~~~L~~~~~~  139 (154)
T d1dcqa1          86 HYCCLTDNAECLKLLLRGKASI--EIANESGETPLDIAKRL--KHEHCEELLTQALSG  139 (154)
T ss_dssp             HHHHHTTCHHHHHHHHHTTCCT--TCCCTTSCCHHHHHHHT--TCHHHHHHHHHHHTT
T ss_pred             ccccccccccccccccccCccc--cccCCCCCCHHHHHHHc--CCHHHHHHHHHhCCC
Confidence            9999999999999999999966  88999999999999854  447888888876544

>d1s70b_ d.211.1.1 (B:) Myosin phosphatase targeting subunit 1, MYPT1 {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myosin phosphatase targeting subunit 1, MYPT1
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=99.89  E-value=2e-22  Score=155.25  Aligned_cols=139  Identities=26%  Similarity=0.362  Sum_probs=107.1

Q ss_pred             hhccchhHHHHHHhhHHHhhhhcccCCCCChHHHHHHHcCCHHHHHHHHHCCCCcccccc--------------------
Q 028370            7 HEQLGPFTLQRKASRKRFFRSVIDTDDRGWTPLHIGARKGDIKLVKQLLDEGMDVNVAAW--------------------   66 (210)
Q Consensus         7 ~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~--------------------   66 (210)
                      ....|.+..+.....+.  .+++.+|..|.||||+|+.+|+.+++++|+++|++......                    
T Consensus        47 A~~~G~~~~v~~Ll~~G--advn~~d~~G~T~L~~A~~~g~~eiv~~Ll~~~~~~~~~~~~~~~~L~~a~~~~~~~~~~~  124 (291)
T d1s70b_          47 ACSSGDTEEVLRLLERG--ADINYANVDGLTALHQACIDDNVDMVKFLVENGANINQPDNEGWIPLHAAASCGYLDIAEY  124 (291)
T ss_dssp             HHHHTCHHHHHHHHHHC--CCTTCBCTTCCBHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHH
T ss_pred             HHHcCCHHHHHHHHHCC--CCCCccCCCCCcHHHHHHhcCCceeeeeecccccccccccccccccccccccccccchhhc
Confidence            34456666666665433  46788999999999999999999999999999877554310                    


Q ss_pred             ---------------------------------------------------------------------CCCCCCCcHHH
Q 028370           67 ---------------------------------------------------------------------GPKSKGVTPLH   77 (210)
Q Consensus        67 ---------------------------------------------------------------------~~~~~g~t~L~   77 (210)
                                                                                           ..+..|.||||
T Consensus       125 l~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~  204 (291)
T d1s70b_         125 LISQGAHVGAVNSEGDTPLDIAEEEAMEELLQNEVNRQGVDIEAARKEEERIMLRDARQWLNSGHINDVRHAKSGGTALH  204 (291)
T ss_dssp             HHHTTCCTTCCCTTSCCHHHHCCSHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCCCTTTCCCHHH
T ss_pred             ccccCcccccccccCccccccccccccchhccccccccccccccccccccccccccchhhhcccccccccccCCCCChhh
Confidence                                                                                 02445667788


Q ss_pred             HHHHCCcHHHHHHHHHcCCCCCcccCCCCCChHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCCCCCccccccc
Q 028370           78 LAAQGGHLEVMDVLLERGADIDARTKGACGWTPLHTAAKERKKEAVRFLIENGAFLPDDINDSRFNPPLHYCPS  151 (210)
Q Consensus        78 ~A~~~~~~~~v~~Ll~~g~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~g~t~l~~a~~  151 (210)
                      .|+..|+.+++++|++.|++++.++.+  |+||||+|+..|+.++|++|+++|+++  +.+|..|+||||+|++
T Consensus       205 ~a~~~~~~~~~~~Ll~~g~din~~~~~--g~TpL~~A~~~g~~~iv~lLl~~Gadv--~~~d~~G~TaL~~A~e  274 (291)
T d1s70b_         205 VAAAKGYTEVLKLLIQARYDVNIKDYD--GWTPLHAAAHWGKEEACRILVENLCDM--EAVNKVGQTAFDVADE  274 (291)
T ss_dssp             HHHHHTCHHHHHHHHTTTCCTTCCCTT--CCCHHHHHHHTTCHHHHHHHHHTTCCT--TCCCTTSCCTTTSCCS
T ss_pred             HHHHcCChhhhcccccceecccccccC--CCCHHHHHHHcCCHHHHHHHHHCCCCC--CCcCCCCCCHHHHHHH
Confidence            888888888888888888888777766  888888888888888888888888855  7778888888888874

>d1sw6a_ d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Swi6 ankyrin-repeat fragment
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.89  E-value=5.4e-23  Score=160.04  Aligned_cols=115  Identities=24%  Similarity=0.278  Sum_probs=95.2

Q ss_pred             hccc-CCCCChHHHHHHHcCCHHHHHHHHHCCCCccccccCCCCCCCcHHHHHHHCCcH-------HHHHHHH-------
Q 028370           28 VIDT-DDRGWTPLHIGARKGDIKLVKQLLDEGMDVNVAAWGPKSKGVTPLHLAAQGGHL-------EVMDVLL-------   92 (210)
Q Consensus        28 ~~~~-d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~g~t~L~~A~~~~~~-------~~v~~Ll-------   92 (210)
                      ++.+ |..|+||||+||..|+.++|+.|+++|++++..    |..|+||||.|+..++.       ++++++.       
T Consensus        99 vn~~~D~~G~T~LH~Aa~~g~~~~v~~Ll~~gad~~~~----d~~G~TpL~~A~~~~~~~~~~~~~~ll~~l~~~~~~~d  174 (301)
T d1sw6a_          99 LNIPVDEHGNTPLHWLTSIANLELVKHLVKHGSNRLYG----DNMGESCLVKAVKSVNNYDSGTFEALLDYLYPCLILED  174 (301)
T ss_dssp             SCSCCSTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTBC----CTTCCCHHHHHHHSSHHHHTTCHHHHHHHHGGGGGEEC
T ss_pred             cCcCcCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCcC----CcccccHHHHhhhcccchhhhhHHHHHHHHhhhhhhcc
Confidence            3434 899999999999999999999999999999988    99999999999986542       2333221       


Q ss_pred             -----------------------------------HcCCC-------------------------------------CCc
Q 028370           93 -----------------------------------ERGAD-------------------------------------IDA  100 (210)
Q Consensus        93 -----------------------------------~~g~~-------------------------------------~~~  100 (210)
                                                         ..+..                                     ++.
T Consensus       175 ~~g~t~lh~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~in~  254 (301)
T d1sw6a_         175 SMNRTILHHIIITSGMTGCSAAAKYYLDILMGWIVKKQNRPIQSGTNEKESKPNDKNGERKDSILENLDLKWIIANMLNA  254 (301)
T ss_dssp             TTCCCHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHGGGCCEEEC----------------CHHHHHCSHHHHHHHTTTC
T ss_pred             cccCCHHHHHHHHhCccccHHHHHHHHHHHHHHHHhcCCcchhcccccccchhHHHHhcchHHHHHHHhhHHHHhcCccC
Confidence                                               11111                                     455


Q ss_pred             ccCCCCCChHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCCCCCcccccc
Q 028370          101 RTKGACGWTPLHTAAKERKKEAVRFLIENGAFLPDDINDSRFNPPLHYCP  150 (210)
Q Consensus       101 ~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~g~t~l~~a~  150 (210)
                      +|.+  |+||||+|++.|+.++|++|+++|+++  +++|..|.|||++|+
T Consensus       255 ~D~~--G~TpLh~A~~~g~~~iv~~Ll~~GAd~--~~~n~~G~Tpl~~A~  300 (301)
T d1sw6a_         255 QDSN--GDTCLNIAARLGNISIVDALLDYGADP--FIANKSGLRPVDFGA  300 (301)
T ss_dssp             CCTT--SCCHHHHHHHHCCHHHHHHHHHTTCCT--TCCCTTSCCGGGGTC
T ss_pred             CCCC--CCCHHHHHHHcCCHHHHHHHHHCCCCC--CCCCCCCCCHHHHcC
Confidence            5555  999999999999999999999999966  999999999999997

>d1iknd_ d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: I-kappa-B-alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.89  E-value=3.2e-23  Score=154.20  Aligned_cols=133  Identities=24%  Similarity=0.331  Sum_probs=101.0

Q ss_pred             hhhcccCCCCChHHHHHHHcCCHHHHHHHHHCCCCccccccCCCCCCCcHHHHHHHCCc---------------------
Q 028370           26 RSVIDTDDRGWTPLHIGARKGDIKLVKQLLDEGMDVNVAAWGPKSKGVTPLHLAAQGGH---------------------   84 (210)
Q Consensus        26 ~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~g~t~L~~A~~~~~---------------------   84 (210)
                      .+++.+|..|+||||+|+..|+.+++++|++.|++++..    +..|.|||++++..++                     
T Consensus        30 ~~in~~d~~g~TpLh~A~~~~~~~iv~~L~~~g~d~~~~----d~~g~t~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~  105 (221)
T d1iknd_          30 AFLNFQNNLQQTPLHLAVITNQPEIAEALLGAGCDPELR----DFRGNTPLHLACEQGCLASVGVLTQSCTTPHLHSILK  105 (221)
T ss_dssp             CCCCCCCTTCCCHHHHHHHTTCHHHHHCCCSCCCCSCCC----CTTCCCHHHHHHHHTCHHHHHHHHHSTTTTSSSCGGG
T ss_pred             CCcccCCCCCCcccccccccccccccccccccccccccc----ccccccccccccccccccccchhhhhccccccccccc
Confidence            456778888999999999999999999998888888776    5555555555555554                     


Q ss_pred             ------------------HHHHHHHHHcCCCCCcccCCCCCChHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCCCCCcc
Q 028370           85 ------------------LEVMDVLLERGADIDARTKGACGWTPLHTAAKERKKEAVRFLIENGAFLPDDINDSRFNPPL  146 (210)
Q Consensus        85 ------------------~~~v~~Ll~~g~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~g~t~l  146 (210)
                                        .+++++|+..|+.++..+. ..|.||||+|+..|+.+++++|+++|+++  +.+|..|.|||
T Consensus       106 ~~~~~~~t~l~~a~~~~~~~~~~~l~~~~~~~~~~~~-~~G~T~L~~A~~~g~~~~v~~Ll~~gad~--~~~~~~G~tpl  182 (221)
T d1iknd_         106 ATNYNGHTCLHLASIHGYLGIVELLVSLGADVNAQEP-CNGRTALHLAVDLQNPDLVSLLLKCGADV--NRVTYQGYSPY  182 (221)
T ss_dssp             CCCTTCCCHHHHHHHTTCHHHHHHHHHHTCCTTCCCT-TTCCCHHHHHHHTTCHHHHHHHHTTTCCS--CCCCTTCCCGG
T ss_pred             ccccccchhhhHHhhcCChhheeeecccCcccccccc-cCCCCccccccccccHHHHHHHHhcCCcc--cccCCCCCCHH
Confidence                              4455555555555554432 23899999999999999999999999965  88999999999


Q ss_pred             cccccchHHHHHHHHHhhhhh
Q 028370          147 HYCPSLEWAYEEMMRFQRESF  167 (210)
Q Consensus       147 ~~a~~~~~~~~~~~~~l~~~~  167 (210)
                      ++|+..+  ..++++++.+..
T Consensus       183 ~~A~~~~--~~~~~~~l~~~~  201 (221)
T d1iknd_         183 QLTWGRP--STRIQQQLGQLT  201 (221)
T ss_dssp             GGCTTSS--CHHHHHHHHTTS
T ss_pred             HHHHHCC--CHHHHHHHHHcC
Confidence            9998544  477877777653

>d1awcb_ d.211.1.1 (B:) GA bindinig protein (GABP) beta 1 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: GA bindinig protein (GABP) beta 1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.88  E-value=1.8e-22  Score=141.53  Aligned_cols=142  Identities=27%  Similarity=0.381  Sum_probs=117.2

Q ss_pred             cchhHHHHHHhhHHHhhhhcccCCCCChHHHHHHHcCCHHHHHHHHHCCCCccccccCCCCCCCcHHHHHHHCCcHHHHH
Q 028370           10 LGPFTLQRKASRKRFFRSVIDTDDRGWTPLHIGARKGDIKLVKQLLDEGMDVNVAAWGPKSKGVTPLHLAAQGGHLEVMD   89 (210)
Q Consensus        10 ~~~~~~~~~~~~~~~~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~   89 (210)
                      .|....+.......  .+. ..|..|+||||+|+..++.+++..++.........    +..+.++++.++...+.++++
T Consensus        12 ~g~~~~v~~LL~~g--a~~-~~~~~g~t~L~~a~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~   84 (153)
T d1awcb_          12 AGQDDEVRILMANG--APF-TTDWLGTSPLHLAAQYGHFSTTEVLLRAGVSRDAR----TKVDRTPLHMAASEGHANIVE   84 (153)
T ss_dssp             HTCHHHHHHHHHHT--CCC-CCCTTCCCHHHHHHHHTCHHHHHHHHTTTCCTTCC----CTTCCCHHHHHHHHTCHHHHH
T ss_pred             CCCHHHHHHHHHcC--CCc-ccccCCCcccccccccccccccccccccccccccc----ccccccccccccccccceeee
Confidence            35555555555433  233 36888999999999999999999888887666655    677788999999999999999


Q ss_pred             HHHHcCCCCCcccCCCCCChHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCCCCCcccccccchHHHHHHHHHhh
Q 028370           90 VLLERGADIDARTKGACGWTPLHTAAKERKKEAVRFLIENGAFLPDDINDSRFNPPLHYCPSLEWAYEEMMRFQR  164 (210)
Q Consensus        90 ~Ll~~g~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~~~l~  164 (210)
                      ++...+++++.++.+  |.||||+|+..|+.+++++|++.|+++  +.+|..|.|||++|+..  +..+++++|+
T Consensus        85 ~l~~~~~~~~~~~~~--g~T~L~~A~~~g~~~iv~~ll~~gad~--~~~d~~g~Tpl~~A~~~--g~~eiv~lL~  153 (153)
T d1awcb_          85 VLLKHGADVNAKDML--KMTALHWATEHNHQEVVELLIKYGADV--HTQSKFCKTAFDISIDN--GNEDLAEILQ  153 (153)
T ss_dssp             HHHTTTCCTTCCCTT--SCCHHHHHHHTTCHHHHHHHHHTTCCT--TCCCTTSCCHHHHHHHT--TCHHHHHHHC
T ss_pred             cccccCCcccccccc--CchHHHhhhhcchhheeeeccccccCC--cccCCCCCCHHHHHHHc--CCHHHHHhCc
Confidence            999999999888777  999999999999999999999999966  88999999999999954  4578888763

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.88  E-value=1.1e-22  Score=163.32  Aligned_cols=136  Identities=29%  Similarity=0.472  Sum_probs=122.6

Q ss_pred             hhhcccCCCCChHHHHHHHcCCHHHHHHHHHCCCCccccccCCCCCCCcHHHHHHHCCcHHHHHHHHHcCCCCCcccCCC
Q 028370           26 RSVIDTDDRGWTPLHIGARKGDIKLVKQLLDEGMDVNVAAWGPKSKGVTPLHLAAQGGHLEVMDVLLERGADIDARTKGA  105 (210)
Q Consensus        26 ~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~  105 (210)
                      ...+..|..|.||++.|++.++.+++++|+++|++++..    +..+.||||.++..++..+++++++.|++++.++.+ 
T Consensus       255 ~~~~~~~~~g~~~l~~a~~~~~~~i~~~Ll~~g~~~~~~----~~~~~t~L~~~~~~~~~~~~~~ll~~g~~in~~d~~-  329 (408)
T d1n11a_         255 ANGNLGNKSGLTPLHLVAQEGHVPVADVLIKHGVMVDAT----TRMGYTPLHVASHYGNIKLVKFLLQHQADVNAKTKL-  329 (408)
T ss_dssp             CCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHHTCCTTCC----CSSCCCHHHHHHHSSCSHHHHHHHHTTCCTTCCCTT-
T ss_pred             cccccccCCCCChhhhhhhcCcHHHHHHHHHCCCccccc----cccccccchhhcccCcceeeeeeccccccccccCCC-
Confidence            345567889999999999999999999999999999888    788999999999999999999999999999999887 


Q ss_pred             CCChHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCCCCCcccccccchHHHHHHHHHhhhhhhcCC
Q 028370          106 CGWTPLHTAAKERKKEAVRFLIENGAFLPDDINDSRFNPPLHYCPSLEWAYEEMMRFQRESFSAGE  171 (210)
Q Consensus       106 ~g~tpL~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~~~l~~~~~~~~  171 (210)
                       |.||||+|+..|+.++|++|+++|+++  +.+|..|.||||+|+..+  +.+++++|........
T Consensus       330 -G~T~Lh~A~~~g~~~iv~~Ll~~GAd~--n~~d~~G~t~L~~A~~~~--~~~iv~~L~~~~~~~~  390 (408)
T d1n11a_         330 -GYSPLHQAAQQGHTDIVTLLLKNGASP--NEVSSDGTTPLAIAKRLG--YISVTDVLKVVTDETS  390 (408)
T ss_dssp             -SCCHHHHHHHTTCHHHHHHHHHTTCCS--CCCCSSSCCHHHHHHHTT--CHHHHHHHHHHCCCCS
T ss_pred             -CCCHHHHHHHcCCHHHHHHHHHCCCCC--CCCCCCCCCHHHHHHHcC--CHHHHHHHHHHHhccc
Confidence             999999999999999999999999965  899999999999999554  4788888877765554

>d1ihba_ d.211.1.1 (A:) p18ink4C(ink6) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: p18ink4C(ink6)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.88  E-value=1.5e-22  Score=142.45  Aligned_cols=146  Identities=23%  Similarity=0.313  Sum_probs=117.0

Q ss_pred             ccchhHHHHHHhhHHHhhhhcccCCCCChHHHHHHHcCCHHHHHHHHHCCCCccccccCCCCCCCcHHHHHHHCCcHHHH
Q 028370            9 QLGPFTLQRKASRKRFFRSVIDTDDRGWTPLHIGARKGDIKLVKQLLDEGMDVNVAAWGPKSKGVTPLHLAAQGGHLEVM   88 (210)
Q Consensus         9 ~~~~~~~~~~~~~~~~~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v   88 (210)
                      ..|+...+..+...  ..+++.+|..|.||||+|+ .|+.+++++|+++|++++..    +..+.++++.++..+....+
T Consensus        10 ~~g~~~~v~~Ll~~--g~d~n~~d~~g~TpL~~A~-~~~~ei~~~Ll~~~a~~~~~----~~~~~~~l~~~~~~~~~~~~   82 (156)
T d1ihba_          10 ARGDLEQLTSLLQN--NVNVNAQNGFGRTALQVMK-LGNPEIARRLLLRGANPDLK----DRTGFAVIHDAARAGFLDTL   82 (156)
T ss_dssp             HHTCHHHHHHHTTS--CCCTTCCCTTSCCHHHHCC-SSCHHHHHHHHHTTCCTTCC----CTTSCCHHHHHHHHTCHHHH
T ss_pred             HcCCHHHHHHHHHC--CCCcCccCCcccccccccc-cccccccccccccccccccc----cccCcccccccccccccccc
Confidence            34566666665554  3457778888999998775 68899999999998888877    78888999999999999999


Q ss_pred             HHHHHcCCCCCcccCCCCCChHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCCCCCcccccccchHHHHHHHHHhhhh
Q 028370           89 DVLLERGADIDARTKGACGWTPLHTAAKERKKEAVRFLIENGAFLPDDINDSRFNPPLHYCPSLEWAYEEMMRFQRES  166 (210)
Q Consensus        89 ~~Ll~~g~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~~~l~~~  166 (210)
                      +.++..+.+++..+..  |.+|+|+|+..++.+++++|+++++. +...+|..|.||||+|+..+  ..+++++|.+.
T Consensus        83 ~~l~~~~~~~~~~~~~--~~~~l~~a~~~~~~~~~~~Ll~~~~~-~~~~~d~~g~TpL~~A~~~~--~~~iv~~Ll~~  155 (156)
T d1ihba_          83 QTLLEFQADVNIEDNE--GNLPLHLAAKEGHLRVVEFLVKHTAS-NVGHRNHKGDTACDLARLYG--RNEVVSLMQAN  155 (156)
T ss_dssp             HHHHHTTCCTTCCCTT--SCCHHHHHHHTTCHHHHHHHHHHSCC-CTTCCCTTSCCHHHHHHHTT--CHHHHHHHHHT
T ss_pred             cccccccccccccccc--cccccccccccccccccccccccccc-cccccCCCCCCHHHHHHHcC--CHHHHHHHHhc
Confidence            9998888888877666  88999999999999999999988872 34788888999999988543  47788887654

>d1dcqa1 d.211.1.1 (A:369-522) Pyk2-associated protein beta {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Pyk2-associated protein beta
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.87  E-value=5.5e-22  Score=139.57  Aligned_cols=95  Identities=23%  Similarity=0.369  Sum_probs=89.5

Q ss_pred             cCCCCChHHHHHHHc---CCHHHHHHHHHCCCCccccccCCCCCCCcHHHHHHHCCcHHHHHHHHHcCCCCCcccCCCCC
Q 028370           31 TDDRGWTPLHIGARK---GDIKLVKQLLDEGMDVNVAAWGPKSKGVTPLHLAAQGGHLEVMDVLLERGADIDARTKGACG  107 (210)
Q Consensus        31 ~d~~g~t~L~~A~~~---g~~~~v~~Ll~~g~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~~g  107 (210)
                      .+..|+||||+|++.   +..+++++|+++|++++.+    |..|+||||+|+..|+.+++++|+++|++++..+.+  |
T Consensus        41 ~~~~g~t~Lh~A~~~~~~~~~~iv~~Ll~~gadin~~----d~~g~TpLh~A~~~~~~~~v~~Ll~~gad~~~~d~~--g  114 (154)
T d1dcqa1          41 GHEPDETALHLAVRSVDRTSLHIVDFLVQNSGNLDKQ----TGKGSTALHYCCLTDNAECLKLLLRGKASIEIANES--G  114 (154)
T ss_dssp             CSSTTCBHHHHHHHHCCTTTHHHHHHHHHHCSCTTCC----CTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTT--S
T ss_pred             CCCCCCchHHHHHHhcCCCCHHHHHHHHHcCCChhhh----hhhhccccccccccccccccccccccCccccccCCC--C
Confidence            467899999999985   6789999999999999988    999999999999999999999999999999999887  9


Q ss_pred             ChHHHHHHhcCCHHHHHHHHHcCC
Q 028370          108 WTPLHTAAKERKKEAVRFLIENGA  131 (210)
Q Consensus       108 ~tpL~~A~~~g~~~~v~~Ll~~g~  131 (210)
                      .||||+|+..|+.+++++|++.++
T Consensus       115 ~tpL~~A~~~~~~~i~~~L~~~~~  138 (154)
T d1dcqa1         115 ETPLDIAKRLKHEHCEELLTQALS  138 (154)
T ss_dssp             CCHHHHHHHTTCHHHHHHHHHHHT
T ss_pred             CCHHHHHHHcCCHHHHHHHHHhCC
Confidence            999999999999999999999876

>d1oy3d_ d.211.1.1 (D:) Transcription factor inhibitor I-kappa-B-beta, IKBB {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Transcription factor inhibitor I-kappa-B-beta, IKBB
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.85  E-value=3.6e-21  Score=145.43  Aligned_cols=104  Identities=36%  Similarity=0.500  Sum_probs=95.4

Q ss_pred             HhhhhcccCCCCChHHHHHHHcCCHHHHHHHHHCCCCccccccCCCCCCCcHHHHHHHCCcHHHHHHHHHcCCCCCcccC
Q 028370           24 FFRSVIDTDDRGWTPLHIGARKGDIKLVKQLLDEGMDVNVAAWGPKSKGVTPLHLAAQGGHLEVMDVLLERGADIDARTK  103 (210)
Q Consensus        24 ~~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~  103 (210)
                      ....++.+|..|.||||+|++.++.+++++|++.+++.+...   +..|.||||+|+..|+.+++++|+++|++++.++.
T Consensus       147 ~~~~in~~d~~g~TpLh~A~~~~~~~~v~~Ll~~~~~~~~~~---~~~g~TpL~~A~~~~~~~~v~~Ll~~gadin~~d~  223 (255)
T d1oy3d_         147 WRLQLEAENYDGHTPLHVAVIHKDAEMVRLLRDAGADLNKPE---PTCGRTPLHLAVEAQAASVLELLLKAGADPTARMY  223 (255)
T ss_dssp             GGGGTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHTCCTTCCC---TTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCT
T ss_pred             cCcccccccccCcccccccccccccccccchhcccccccccc---cccccccccccccccHHHHHHHHHHCCCCCCCCCC
Confidence            345567799999999999999999999999999999887543   67899999999999999999999999999999887


Q ss_pred             CCCCChHHHHHHhcCCHHHHHHHHHcCCC
Q 028370          104 GACGWTPLHTAAKERKKEAVRFLIENGAF  132 (210)
Q Consensus       104 ~~~g~tpL~~A~~~g~~~~v~~Ll~~g~~  132 (210)
                      .  |.||||+|+..++.+++++|+++||+
T Consensus       224 ~--g~t~L~~A~~~~~~~i~~~Ll~~Ga~  250 (255)
T d1oy3d_         224 G--GRTPLGSALLRPNPILARLLRAHGAP  250 (255)
T ss_dssp             T--SCCHHHHHHTSSCHHHHHHHHHTTCC
T ss_pred             C--CCCHHHHHHHCCCHHHHHHHHHcCCC
Confidence            7  99999999999999999999999994

>d1ihba_ d.211.1.1 (A:) p18ink4C(ink6) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: p18ink4C(ink6)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.85  E-value=2e-21  Score=136.55  Aligned_cols=122  Identities=27%  Similarity=0.394  Sum_probs=110.9

Q ss_pred             hHHHHHHHcCCHHHHHHHHHCCCCccccccCCCCCCCcHHHHHHHCCcHHHHHHHHHcCCCCCcccCCCCCChHHHHHHh
Q 028370           37 TPLHIGARKGDIKLVKQLLDEGMDVNVAAWGPKSKGVTPLHLAAQGGHLEVMDVLLERGADIDARTKGACGWTPLHTAAK  116 (210)
Q Consensus        37 t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~~g~tpL~~A~~  116 (210)
                      ++||+|+..|+.++++.|+++|++++..    |..|.||||+|+ .++.+++++|++.|++++..+..  |.+|++.++.
T Consensus         3 ~~Lh~Aa~~g~~~~v~~Ll~~g~d~n~~----d~~g~TpL~~A~-~~~~ei~~~Ll~~~a~~~~~~~~--~~~~l~~~~~   75 (156)
T d1ihba_           3 NELASAAARGDLEQLTSLLQNNVNVNAQ----NGFGRTALQVMK-LGNPEIARRLLLRGANPDLKDRT--GFAVIHDAAR   75 (156)
T ss_dssp             HHHHHHHHHTCHHHHHHHTTSCCCTTCC----CTTSCCHHHHCC-SSCHHHHHHHHHTTCCTTCCCTT--SCCHHHHHHH
T ss_pred             HHHHHHHHcCCHHHHHHHHHCCCCcCcc----CCcccccccccc-ccccccccccccccccccccccc--Cccccccccc
Confidence            8999999999999999999999999988    999999999885 78999999999999999988877  9999999999


Q ss_pred             cCCHHHHHHHHHcCCCCCCCCCCCCCCCcccccccchHHHHHHHHHhhhhhhc
Q 028370          117 ERKKEAVRFLIENGAFLPDDINDSRFNPPLHYCPSLEWAYEEMMRFQRESFSA  169 (210)
Q Consensus       117 ~g~~~~v~~Ll~~g~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~~~l~~~~~~  169 (210)
                      .+..+++++|+..+.++  +..+..|.+|+++|+..  +..++++++.+....
T Consensus        76 ~~~~~~~~~l~~~~~~~--~~~~~~~~~~l~~a~~~--~~~~~~~~Ll~~~~~  124 (156)
T d1ihba_          76 AGFLDTLQTLLEFQADV--NIEDNEGNLPLHLAAKE--GHLRVVEFLVKHTAS  124 (156)
T ss_dssp             HTCHHHHHHHHHTTCCT--TCCCTTSCCHHHHHHHT--TCHHHHHHHHHHSCC
T ss_pred             ccccccccccccccccc--ccccccccccccccccc--ccccccccccccccc
Confidence            99999999999999965  88899999999999854  447888888777543

>d1ixva_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.85  E-value=2.7e-21  Score=143.86  Aligned_cols=126  Identities=20%  Similarity=0.214  Sum_probs=99.9

Q ss_pred             ChHHHHHHHcCCHHHHHHHHHC-CCCccccccCCCCCCCcHHHHHHHCCcHHHHHHHHHcCCCCCccc------------
Q 028370           36 WTPLHIGARKGDIKLVKQLLDE-GMDVNVAAWGPKSKGVTPLHLAAQGGHLEVMDVLLERGADIDART------------  102 (210)
Q Consensus        36 ~t~L~~A~~~g~~~~v~~Ll~~-g~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~------------  102 (210)
                      ++|||+||+.|+.++++.|++. +.+++.+    |.+|+||||+|+..|+.+++++|+++|++++..+            
T Consensus         1 n~pLh~A~~~g~~~~v~~Ll~~~~~~~~~~----d~~G~TpL~~A~~~g~~~iv~~Ll~~ga~~~~~~~~~~~~~~~~~~   76 (229)
T d1ixva_           1 NYPLHQACMENEFFKVQELLHSKPSLLLQK----DQDGRIPLHWSVSFQAHEITSFLLSKMENVNLDDYPDDSGWTPFHI   76 (229)
T ss_dssp             CCHHHHHHHHTCHHHHHHHHHHCGGGTTCC----CTTSCCHHHHHHHTTCHHHHHHHHTTCTTCCGGGCCCTTSCCHHHH
T ss_pred             CHhHHHHHHcCCHHHHHHHHHcCCCccccc----CCCCCCHHHHHHHcCCccccchhhhhhccccccccccccccccccc
Confidence            5899999999999999999975 4566666    8999999999999999999999999998876532            


Q ss_pred             ---------------------------------------------------------CCCCCChHHHHHHhcCCHHHHHH
Q 028370          103 ---------------------------------------------------------KGACGWTPLHTAAKERKKEAVRF  125 (210)
Q Consensus       103 ---------------------------------------------------------~~~~g~tpL~~A~~~g~~~~v~~  125 (210)
                                                                               .+..|.||||+|+..|+.+++++
T Consensus        77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~  156 (229)
T d1ixva_          77 ACSVGNLEVVKSLYDRPLKPDLNKITNQGVTCLHLAVGKKWFEVSQFLIENGASVRIKDKFNQIPLHRAASVGSLKLIEL  156 (229)
T ss_dssp             HHHHTCHHHHHHHHSSSSCCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHHTCHHHHHH
T ss_pred             cccccccccccccccccccccccccccccccccccccccchhhhhhhhhhhcccccccCCCCCCccchhhhccccccccc
Confidence                                                                     11336788888888888888888


Q ss_pred             HHHcCCCCCCCCCCCCCCCcccccccchHHHHHHHHHhhhhhh
Q 028370          126 LIENGAFLPDDINDSRFNPPLHYCPSLEWAYEEMMRFQRESFS  168 (210)
Q Consensus       126 Ll~~g~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~~~l~~~~~  168 (210)
                      |++.+.. +.+.+|..|.||||+|+..  +..+++++|.+...
T Consensus       157 Ll~~~~~-~in~~d~~g~TpLh~A~~~--~~~~~v~~Ll~~~g  196 (229)
T d1ixva_         157 LCGLGKS-AVNWQDKQGWTPLFHALAE--GHGDAAVLLVEKYG  196 (229)
T ss_dssp             HHTTTCC-CSCCCCTTSCCHHHHHHHT--TCHHHHHHHHHHHC
T ss_pred             ccccccc-cccccccccCCchhhhccc--ccHHHHHHHHHhcC
Confidence            8887742 3467788888888888843  44677777776543

>d2ajaa1 a.118.24.1 (A:3-348) Hypothetical protein LPG2416 {Legionella pneumophila [TaxId: 446]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Pseudo ankyrin repeat-like
family: Pseudo ankyrin repeat
domain: Hypothetical protein LPG2416
species: Legionella pneumophila [TaxId: 446]

Probab=99.84  E-value=5.1e-24  Score=169.00  Aligned_cols=136  Identities=16%  Similarity=0.136  Sum_probs=109.1

Q ss_pred             hhhhcccCCCCChHHHHHHHcCCHHHHHH---HHHCCCCccccccCCCCCCCcHHHHHHHCCcHHHHHHHHHcCCCCCcc
Q 028370           25 FRSVIDTDDRGWTPLHIGARKGDIKLVKQ---LLDEGMDVNVAAWGPKSKGVTPLHLAAQGGHLEVMDVLLERGADIDAR  101 (210)
Q Consensus        25 ~~~~~~~d~~g~t~L~~A~~~g~~~~v~~---Ll~~g~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~  101 (210)
                      ...++.++..|.||||+|+++|+.++++.   |++.|++++..    +..|+||||+|+..|+.++|++|++.|++++..
T Consensus        80 ~~~~~~~~~~~~t~L~~Aa~~g~~~~~~~~~~L~~~~~~in~~----~~~g~taL~~Aa~~G~~~~v~~Ll~~g~~~~~~  155 (346)
T d2ajaa1          80 WSDAHKKGIKSEVICFVAAITGCSSALDTLCLLLTSDEIVKVI----QAENYQAFRLAAENGHLHVLNRLCELAPTEIMA  155 (346)
T ss_dssp             HHHHHHHTCCHHHHHHHHHHHCCHHHHHHHTTC--CCSSCC------CHHHHHHHHHHHHTTCHHHHHHHHHSCTTTHHH
T ss_pred             hhHHHhccCCCCcHHHHHHHhCCHHHHHHHHHHHhCCCccccc----CCCCCCHHHHHHHCCCHHHHHHHHHcCCCcccc
Confidence            34456788899999999999999877665   78999999988    899999999999999999999999999999887


Q ss_pred             cCCCCCChHHHHHHhcCCHHHHHHHHHcCCCCC-CCCCCCCCCCcccccccchHHHHHHHHHhhhh
Q 028370          102 TKGACGWTPLHTAAKERKKEAVRFLIENGAFLP-DDINDSRFNPPLHYCPSLEWAYEEMMRFQRES  166 (210)
Q Consensus       102 ~~~~~g~tpL~~A~~~g~~~~v~~Ll~~g~~~~-~~~~~~~g~t~l~~a~~~~~~~~~~~~~l~~~  166 (210)
                      +....|.||||+|+..|+.++|++|++.|++.. .+..+.+|.||+++|+..  +..+++++|.+.
T Consensus       156 ~~~~~g~t~L~~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~~~~~t~l~~A~~~--g~~~iv~~Ll~~  219 (346)
T d2ajaa1         156 MIQAENYHAFRLAAENGHLHVLNRLCELAPTEATAMIQAENYYAFRWAAVGR--GHHNVINFLLDC  219 (346)
T ss_dssp             HHSHHHHHHHHHHHHTTCHHHHHHHHHSCGGGHHHHHHHHHHHHHHHHHSTT--CCHHHHHHHTTS
T ss_pred             ccccCCCChhHHHHHHhhHHHHHHHHHcCCcccccccccCCCcchhhHHhhc--CHHHHHHHHHhC
Confidence            644348999999999999999999999997431 123345567888888844  457889988765

>d1bi7b_ d.211.1.1 (B:) Cell cycle inhibitor p16ink4A {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Cell cycle inhibitor p16ink4A
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.83  E-value=3.5e-21  Score=130.87  Aligned_cols=112  Identities=24%  Similarity=0.340  Sum_probs=97.0

Q ss_pred             hccchhHHHHHHhhHHHhhhhcccCCCCChHHHHHHHcCCHHHHHHHHHCCCCccccccCCCCCC-CcHHHHHHHCCcHH
Q 028370            8 EQLGPFTLQRKASRKRFFRSVIDTDDRGWTPLHIGARKGDIKLVKQLLDEGMDVNVAAWGPKSKG-VTPLHLAAQGGHLE   86 (210)
Q Consensus         8 ~~~~~~~~~~~~~~~~~~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~g-~t~L~~A~~~~~~~   86 (210)
                      ...|.+..+......  ..+++.+|..|.||||.|+ .|+.+++++|+++|++++..    +..+ .||||+|+..|+.+
T Consensus        11 a~~G~~~~v~~Ll~~--gad~n~~~~~g~t~l~~a~-~g~~~~v~~Ll~~ga~~~~~----~~~~~~~~L~~A~~~g~~~   83 (125)
T d1bi7b_          11 AARGRVEEVRALLEA--GANPNAPNSYGRRPIQVMM-MGSARVAELLLLHGAEPNCA----DPATLTRPVHDAAREGFLD   83 (125)
T ss_dssp             HHHTCHHHHHHHHTT--TCCTTCCCSSSCCTTTSSC-TTCHHHHHHHHTTTCCCCCC----CTTTCCCHHHHHHHHTCHH
T ss_pred             HHCCCHHHHHHHHHc--CCccccccccccccccccc-cccccccccccccccccccc----ccccccccccccccccccc
Confidence            345666666666553  3567889999999999775 79999999999999999887    6665 47999999999999


Q ss_pred             HHHHHHHcCCCCCcccCCCCCChHHHHHHhcCCHHHHHHHHH
Q 028370           87 VMDVLLERGADIDARTKGACGWTPLHTAAKERKKEAVRFLIE  128 (210)
Q Consensus        87 ~v~~Ll~~g~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~  128 (210)
                      ++++|++.|++++..+..  |.||||+|+..|+.+++++|++
T Consensus        84 ~v~~Ll~~ga~~~~~d~~--G~T~l~~A~~~g~~~~v~~Lls  123 (125)
T d1bi7b_          84 TLVVLHRAGARLDVRDAW--GRLPVDLAEELGHRDVARYLRA  123 (125)
T ss_dssp             HHHHHHHHTCCSSCCCTT--CCCHHHHHHHHTCHHHHHHHSS
T ss_pred             ccccccccccccccccCC--CCCHHHHHHHcCCHHHHHHHHh
Confidence            999999999999999877  9999999999999999999975

>d1ycsb1 d.211.1.1 (B:327-456) 53BP2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 53BP2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.82  E-value=1.7e-20  Score=128.34  Aligned_cols=116  Identities=30%  Similarity=0.357  Sum_probs=98.3

Q ss_pred             ccchhHHHHHHhhHHHhhhhcccCCCCChHHHHHHHcCCHHHHHHHHHCCCCccccccCCCCCCCcHHHHHHHCCcHHHH
Q 028370            9 QLGPFTLQRKASRKRFFRSVIDTDDRGWTPLHIGARKGDIKLVKQLLDEGMDVNVAAWGPKSKGVTPLHLAAQGGHLEVM   88 (210)
Q Consensus         9 ~~~~~~~~~~~~~~~~~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v   88 (210)
                      ..|.+..+.....+  ..+++.+|..|+||||+|+..|+.+++++|++.|++++..    |.+|+||||+|+..|+.+++
T Consensus        10 ~~G~~~~v~~Ll~~--g~d~n~~d~~g~t~Lh~A~~~~~~~~~~~ll~~g~~~~~~----d~~g~tpLh~A~~~g~~~~v   83 (130)
T d1ycsb1          10 LEGEFDLVQRIIYE--VDDPSLPNDEGITALHNAVCAGHTEIVKFLVQFGVNVNAA----DSDGWTPLHCAASCNNVQVC   83 (130)
T ss_dssp             HHTCHHHHHHHTST--TSSCCCCCTTSCCHHHHHHHHTCHHHHHHHHHHTCCTTCC----CTTCCCHHHHHHHTTCHHHH
T ss_pred             HcCCHHHHHHHHHc--CCCccccccccccccccccccccccccccccccccccccc----cccCcccccccchhhHHHHH
Confidence            34566666655544  3568899999999999999999999999999999999988    99999999999999999999


Q ss_pred             HHHHHcCCCCCcccCCCCCChHHHHH--HhcCCHHHHHHHHHcCC
Q 028370           89 DVLLERGADIDARTKGACGWTPLHTA--AKERKKEAVRFLIENGA  131 (210)
Q Consensus        89 ~~Ll~~g~~~~~~~~~~~g~tpL~~A--~~~g~~~~v~~Ll~~g~  131 (210)
                      ++|+++|++++..+... +.||++++  +..|+.+++++|+..+.
T Consensus        84 ~~Ll~~ga~v~~~~~~~-~~~~~~~~~a~~~g~~eiv~~L~~~~~  127 (130)
T d1ycsb1          84 KFLVESGAAVFAMTYSD-MQTAADKCEEMEEGYTQCSQFLYGVQE  127 (130)
T ss_dssp             HHHHHTTCCTTCCCSSS-CCCHHHHCCSSSTTCCCHHHHHHHHHH
T ss_pred             HHHHHcCCCcccccCCC-CCCHHHHHHHHHcChHHHHHHHHhHHH
Confidence            99999999999775432 77887765  56788999999997643

>d1bd8a_ d.211.1.1 (A:) Cell cycle inhibitor p19ink4D {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Cell cycle inhibitor p19ink4D
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.82  E-value=7.4e-20  Score=128.71  Aligned_cols=118  Identities=24%  Similarity=0.357  Sum_probs=105.7

Q ss_pred             hHHHHHHHcCCHHHHHHHHHC-CCCccccccCCCCCCCcHHHHHHHCCcHHHHHHHHHcCCCCCcccCCCCCChHHHHHH
Q 028370           37 TPLHIGARKGDIKLVKQLLDE-GMDVNVAAWGPKSKGVTPLHLAAQGGHLEVMDVLLERGADIDARTKGACGWTPLHTAA  115 (210)
Q Consensus        37 t~L~~A~~~g~~~~v~~Ll~~-g~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~~g~tpL~~A~  115 (210)
                      ..|+.|+..|+.++|+.|++. +++++..    |..|+||||+|+ .++.+++++|+..+.+++..+..  |.+|++.++
T Consensus         4 ~~L~~Aa~~g~~~~vk~lL~~~~~~~n~~----d~~g~t~L~~A~-~~~~~~v~~Ll~~~~~~~~~~~~--~~~~l~~~~   76 (156)
T d1bd8a_           4 DRLSGAAARGDVQEVRRLLHRELVHPDAL----NRFGKTALQVMM-FGSTAIALELLKQGASPNVQDTS--GTSPVHDAA   76 (156)
T ss_dssp             HHHHHHHHHTCHHHHHHHHHTTCCCTTCC----CTTSCCHHHHSC-TTCHHHHHHHHHTTCCTTCCCTT--SCCHHHHHH
T ss_pred             HHHHHHHHcCCHHHHHHHHHhCCCCCCcc----CCCCCccccccc-ccccccccccccccccccccccc--ccccccccc
Confidence            459999999999999999976 6898888    999999999986 48899999999999999988776  999999999


Q ss_pred             hcCCHHHHHHHHHcCCCCCCCCCCCCCCCcccccccchHHHHHHHHHhhh
Q 028370          116 KERKKEAVRFLIENGAFLPDDINDSRFNPPLHYCPSLEWAYEEMMRFQRE  165 (210)
Q Consensus       116 ~~g~~~~v~~Ll~~g~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~~~l~~  165 (210)
                      ..++.+++++++++|+++  +.+|..|.||||+|+..  +..+++++|..
T Consensus        77 ~~~~~~~~~~~l~~~~~~--n~~~~~~~t~L~~A~~~--~~~~i~~~L~~  122 (156)
T d1bd8a_          77 RTGFLDTLKVLVEHGADV--NVPDGTGALPIHLAVQE--GHTAVVSFLAA  122 (156)
T ss_dssp             HTTCHHHHHHHHHTTCCS--CCCCTTSCCHHHHHHHH--TCHHHHHHHHT
T ss_pred             cccccccccccccccccc--ccccCCCCeeecccccc--ccccccccccc
Confidence            999999999999999965  78899999999999954  45788888864

>d1s70b_ d.211.1.1 (B:) Myosin phosphatase targeting subunit 1, MYPT1 {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myosin phosphatase targeting subunit 1, MYPT1
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=99.80  E-value=2.5e-19  Score=137.65  Aligned_cols=122  Identities=30%  Similarity=0.481  Sum_probs=108.6

Q ss_pred             CCChHHHHHHHcCCHHHHHHHHHCCCCccccccCCCCCCCcHHHHHHHCCcHHHHHHHHHcCCCCCcccCCCCCChHHHH
Q 028370           34 RGWTPLHIGARKGDIKLVKQLLDEGMDVNVAAWGPKSKGVTPLHLAAQGGHLEVMDVLLERGADIDARTKGACGWTPLHT  113 (210)
Q Consensus        34 ~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~~g~tpL~~  113 (210)
                      .+.|+|+.||+.|+.++|++|+++|++++..    |..|.||||+|+..|+.+++++|+++|++....+..  +.|||++
T Consensus        39 ~~~t~l~~A~~~G~~~~v~~Ll~~Gadvn~~----d~~G~T~L~~A~~~g~~eiv~~Ll~~~~~~~~~~~~--~~~~L~~  112 (291)
T d1s70b_          39 DDGAVFLAACSSGDTEEVLRLLERGADINYA----NVDGLTALHQACIDDNVDMVKFLVENGANINQPDNE--GWIPLHA  112 (291)
T ss_dssp             CHHHHHHHHHHHTCHHHHHHHHHHCCCTTCB----CTTCCBHHHHHHHTTCHHHHHHHHHTTCCTTCCCTT--SCCHHHH
T ss_pred             CCchHHHHHHHcCCHHHHHHHHHCCCCCCcc----CCCCCcHHHHHHhcCCceeeeeeccccccccccccc--ccccccc
Confidence            3569999999999999999999999999988    999999999999999999999999999998877766  8999999


Q ss_pred             HHhcCCHHHHHHHHHcCCCCCCCCCCCCCCCcccccccchHHHHHHHHHhhh
Q 028370          114 AAKERKKEAVRFLIENGAFLPDDINDSRFNPPLHYCPSLEWAYEEMMRFQRE  165 (210)
Q Consensus       114 A~~~g~~~~v~~Ll~~g~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~~~l~~  165 (210)
                      |+..++.++++.|+++|+..  ...+..|.+|+++|+.  .+..+.++.+..
T Consensus       113 a~~~~~~~~~~~l~~~~~~~--~~~~~~~~~~~~~a~~--~~~~~~~~~ll~  160 (291)
T d1s70b_         113 AASCGYLDIAEYLISQGAHV--GAVNSEGDTPLDIAEE--EAMEELLQNEVN  160 (291)
T ss_dssp             HHHHTCHHHHHHHHHTTCCT--TCCCTTSCCHHHHCCS--HHHHHHHHHHHH
T ss_pred             cccccccchhhcccccCccc--ccccccCccccccccc--cccchhcccccc
Confidence            99999999999999999954  8889999999999984  344555555543

>d1myoa_ d.211.1.1 (A:) Myotrophin {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myotrophin
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.80  E-value=2.6e-21  Score=130.26  Aligned_cols=101  Identities=29%  Similarity=0.417  Sum_probs=89.2

Q ss_pred             hhccchhHHHHHHhhHHHhhhhcccCCCCChHHHHHHHcCCHHHHHHHHHCCCCccccccCCCCCCCcHHHHHHHCCcHH
Q 028370            7 HEQLGPFTLQRKASRKRFFRSVIDTDDRGWTPLHIGARKGDIKLVKQLLDEGMDVNVAAWGPKSKGVTPLHLAAQGGHLE   86 (210)
Q Consensus         7 ~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~g~t~L~~A~~~~~~~   86 (210)
                      ....|.+..+......  ..+++.+|..|+||||+|+..|+.+++++|+++|++++..    |..|+||||+|+..|+.+
T Consensus         9 A~~~g~~~~v~~Ll~~--g~d~n~~~~~g~t~lh~A~~~~~~~~~~~ll~~g~din~~----d~~g~tpLh~A~~~~~~~   82 (118)
T d1myoa_           9 ALKNGDLDEVKDYVAK--GEDVNRTLEGGRKPLHYAADCGQLEILEFLLLKGADINAP----DKHHITPLLSAVYEGHVS   82 (118)
T ss_dssp             HHHTTCHHHHHHHHTT--TCCCCCCSSSSCCTTHHHHHHSTTTHHHHHHHSSCTTTCC----SSSCSCHHHHHHTTTCCH
T ss_pred             HHHCCCHHHHHHHHHh--hhccccccccccccccccccccccccccccccccceeeec----ccccccchhhhhhcCchh
Confidence            3455666666665554  3467889999999999999999999999999999999988    899999999999999999


Q ss_pred             HHHHHHHcCCCCCcccCCCCCChHHHHHH
Q 028370           87 VMDVLLERGADIDARTKGACGWTPLHTAA  115 (210)
Q Consensus        87 ~v~~Ll~~g~~~~~~~~~~~g~tpL~~A~  115 (210)
                      ++++|+++|++++..+.+  |.||||+|.
T Consensus        83 ~v~~Ll~~Gad~~~~d~~--G~t~l~~a~  109 (118)
T d1myoa_          83 CVKLLLSKGADKTVKGPD--GLTALEATD  109 (118)
T ss_dssp             HHHHHHTTCCCSSSSSSS--TCCCCCTCS
T ss_pred             hhhhhhcccccceeeCCC--CCCHHHHHh
Confidence            999999999999999888  999999984

>d1wdya_ d.211.1.1 (A:) RNase L, 2-5a-dependent ribonuclease {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: RNase L, 2-5a-dependent ribonuclease
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.80  E-value=2.6e-19  Score=136.94  Aligned_cols=131  Identities=27%  Similarity=0.338  Sum_probs=111.7

Q ss_pred             cccCCCCChHHHHHHHcCCHHHHHHHHHC-CCCccccccCCCCCCCcHHHHHHHC----CcHHHHHHHHHcCCCCCcccC
Q 028370           29 IDTDDRGWTPLHIGARKGDIKLVKQLLDE-GMDVNVAAWGPKSKGVTPLHLAAQG----GHLEVMDVLLERGADIDARTK  103 (210)
Q Consensus        29 ~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~-g~~~~~~~~~~~~~g~t~L~~A~~~----~~~~~v~~Ll~~g~~~~~~~~  103 (210)
                      ...+..|.||||+|+++|+.+++++|+++ |++++..    +..|.++++.+...    +...++++|++.|++++.++.
T Consensus       142 ~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~i~~~----~~~~~~~~~~~~~~~~~~~~~~i~~~Li~~ga~~n~~~~  217 (285)
T d1wdya_         142 ERLRKGGATALMDAAEKGHVEVLKILLDEMGADVNAC----DNMGRNALIHALLSSDDSDVEAITHLLLDHGADVNVRGE  217 (285)
T ss_dssp             HHTTCCCCCHHHHHHHHTCHHHHHHHHHTSCCCTTCC----CTTSCCHHHHHHHCSCTTTHHHHHHHHHHTTCCSSCCCT
T ss_pred             hhhcccCchHHHHHHHcCCHHHHHHHHhccCCCcccc----cCCCCcccccccccccchHHHHHHHHHHHCCCCCCccCC
Confidence            34666799999999999999999999975 7888877    88888888776553    345799999999999998877


Q ss_pred             CCCCChHHHHHHhcCCHHHHHHHHHc-CCCCCCCCCCCCCCCcccccccchHHHHHHHHHhhhhhhc
Q 028370          104 GACGWTPLHTAAKERKKEAVRFLIEN-GAFLPDDINDSRFNPPLHYCPSLEWAYEEMMRFQRESFSA  169 (210)
Q Consensus       104 ~~~g~tpL~~A~~~g~~~~v~~Ll~~-g~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~~~l~~~~~~  169 (210)
                      .  |.||||+|+..|+.+++++|++. |+++  +.+|.+|.||||+|+..+  ..+++++|.+....
T Consensus       218 ~--g~t~L~~a~~~~~~~~v~~lL~~~g~di--n~~d~~G~TpL~~A~~~~--~~eiv~~Ll~~GAd  278 (285)
T d1wdya_         218 R--GKTPLILAVEKKHLGLVQRLLEQEHIEI--NDTDSDGKTALLLAVELK--LKKIAELLCKRGAS  278 (285)
T ss_dssp             T--SCCHHHHHHHTTCHHHHHHHHHSSSCCT--TCCCTTSCCHHHHHHHTT--CHHHHHHHHHHSSC
T ss_pred             C--CCCccchhhhcCcHHHHHHHHHcCCCCC--cCCCCCCCCHHHHHHHcC--CHHHHHHHHHCCCC
Confidence            7  99999999999999999999985 7765  889999999999999554  58999999877544

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.80  E-value=2.4e-19  Score=143.64  Aligned_cols=150  Identities=28%  Similarity=0.353  Sum_probs=116.5

Q ss_pred             hccchhHHHHHHhhHHHhhhhcccCCCCChHHHHHHHcCCHHHHHHHHHCCCCccccccCCCCCCCcHHHHHHHCCcHHH
Q 028370            8 EQLGPFTLQRKASRKRFFRSVIDTDDRGWTPLHIGARKGDIKLVKQLLDEGMDVNVAAWGPKSKGVTPLHLAAQGGHLEV   87 (210)
Q Consensus         8 ~~~~~~~~~~~~~~~~~~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~g~t~L~~A~~~~~~~~   87 (210)
                      ...|.+..+.....+  ..+++..|..|+||||+|+..|+.+++++|+++|++++..    +..|.||||+|+..|+.++
T Consensus         8 a~~g~~~~v~~Ll~~--g~~in~~d~~g~TpL~~A~~~g~~~iv~~Ll~~gadi~~~----~~~g~t~L~~A~~~g~~~~   81 (408)
T d1n11a_           8 SFMGHLPIVKNLLQR--GASPNVSNVKVETPLHMAARAGHTEVAKYLLQNKAKVNAK----AKDDQTPLHCAARIGHTNM   81 (408)
T ss_dssp             HHHTCHHHHHHHHHT--TCCSCCSSSCCCCHHHHHHHHTCHHHHHHHHHHTCCSSCC----CTTSCCHHHHHHHHTCHHH
T ss_pred             HHCcCHHHHHHHHHC--CCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHCcCCCCCC----CCCCCCHHHHHHHcCCHHH
Confidence            445666666655543  3467888889999999999999999999999999998887    8889999999999999999


Q ss_pred             HHHHHHcCCCCCccc-------------------------------CCCCCChHHHHHHhcCCHHHHHHHHHcCCCCCCC
Q 028370           88 MDVLLERGADIDART-------------------------------KGACGWTPLHTAAKERKKEAVRFLIENGAFLPDD  136 (210)
Q Consensus        88 v~~Ll~~g~~~~~~~-------------------------------~~~~g~tpL~~A~~~g~~~~v~~Ll~~g~~~~~~  136 (210)
                      +++|+..+.++....                               .+..+.++++.|+..++.+++++|+++|+++  +
T Consensus        82 ~~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~v~~ll~~~~~~--~  159 (408)
T d1n11a_          82 VKLLLENNANPNLATTAGHTPLHIAAREGHVETVLALLEKEASQACMTKKGFTPLHVAAKYGKVRVAELLLERDAHP--N  159 (408)
T ss_dssp             HHHHHHHTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCT--T
T ss_pred             HHHHHHhhhccccccccccchhhhhhhhcccccccccccccccccccccccchHHHHHHHcCCHHHHHHHHHcCCCC--C
Confidence            999887654432221                               1223778999999999999999999999855  7


Q ss_pred             CCCCCCCCcccccccchHHHHHHHHHhhhhh
Q 028370          137 INDSRFNPPLHYCPSLEWAYEEMMRFQRESF  167 (210)
Q Consensus       137 ~~~~~g~t~l~~a~~~~~~~~~~~~~l~~~~  167 (210)
                      ..+..|.+||++|+..+  ..++++++....
T Consensus       160 ~~~~~~~~~L~~A~~~~--~~~~~~~Ll~~g  188 (408)
T d1n11a_         160 AAGKNGLTPLHVAVHHN--NLDIVKLLLPRG  188 (408)
T ss_dssp             CCCSSCCCHHHHHHHTT--CHHHHHHHGGGT
T ss_pred             cCCCcCchHHHHHHHcC--CHHHHHHHHhcC
Confidence            88888999999998544  367777777653

>d1awcb_ d.211.1.1 (B:) GA bindinig protein (GABP) beta 1 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: GA bindinig protein (GABP) beta 1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.79  E-value=5e-19  Score=123.62  Aligned_cols=122  Identities=34%  Similarity=0.419  Sum_probs=108.2

Q ss_pred             ChHHHHHHHcCCHHHHHHHHHCCCCccccccCCCCCCCcHHHHHHHCCcHHHHHHHHHcCCCCCcccCCCCCChHHHHHH
Q 028370           36 WTPLHIGARKGDIKLVKQLLDEGMDVNVAAWGPKSKGVTPLHLAAQGGHLEVMDVLLERGADIDARTKGACGWTPLHTAA  115 (210)
Q Consensus        36 ~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~~g~tpL~~A~  115 (210)
                      .|||+.|++.|+.++++.|+++|++++ .    +..|.||||+|+..++.++++.++............  +.++++.++
T Consensus         3 ~t~L~~Aa~~g~~~~v~~LL~~ga~~~-~----~~~g~t~L~~a~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~   75 (153)
T d1awcb_           3 GKKLLEAARAGQDDEVRILMANGAPFT-T----DWLGTSPLHLAAQYGHFSTTEVLLRAGVSRDARTKV--DRTPLHMAA   75 (153)
T ss_dssp             HHHHHHHHHHTCHHHHHHHHHHTCCCC-C----CTTCCCHHHHHHHHTCHHHHHHHHTTTCCTTCCCTT--CCCHHHHHH
T ss_pred             CHHHHHHHHCCCHHHHHHHHHcCCCcc-c----ccCCCccccccccccccccccccccccccccccccc--ccccccccc
Confidence            499999999999999999999999876 4    789999999999999999999999987777666655  889999999


Q ss_pred             hcCCHHHHHHHHHcCCCCCCCCCCCCCCCcccccccchHHHHHHHHHhhhhhh
Q 028370          116 KERKKEAVRFLIENGAFLPDDINDSRFNPPLHYCPSLEWAYEEMMRFQRESFS  168 (210)
Q Consensus       116 ~~g~~~~v~~Ll~~g~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~~~l~~~~~  168 (210)
                      ...+.++++++..+|++.  ..++..|.|||++|+..  +..++++++.+...
T Consensus        76 ~~~~~~~~~~l~~~~~~~--~~~~~~g~T~L~~A~~~--g~~~iv~~ll~~ga  124 (153)
T d1awcb_          76 SEGHANIVEVLLKHGADV--NAKDMLKMTALHWATEH--NHQEVVELLIKYGA  124 (153)
T ss_dssp             HHTCHHHHHHHHTTTCCT--TCCCTTSCCHHHHHHHT--TCHHHHHHHHHTTC
T ss_pred             ccccceeeecccccCCcc--ccccccCchHHHhhhhc--chhheeeecccccc
Confidence            999999999999999955  88999999999999954  45788998887643

>d1ot8a_ d.211.1.1 (A:) Neurogenic locus notch receptor domain {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Neurogenic locus notch receptor domain
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.78  E-value=9.1e-19  Score=128.21  Aligned_cols=96  Identities=27%  Similarity=0.322  Sum_probs=90.2

Q ss_pred             hhhhcccCCCCChHHHHHHHcCCHHHHHHHHHCCCCccccccCCCCCCCcHHHHHHHCCcHHHHHHHHHcCCCCCcccCC
Q 028370           25 FRSVIDTDDRGWTPLHIGARKGDIKLVKQLLDEGMDVNVAAWGPKSKGVTPLHLAAQGGHLEVMDVLLERGADIDARTKG  104 (210)
Q Consensus        25 ~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~  104 (210)
                      ..+++.++..|.|||++++..+..++++.+++.+.+++..    |..|.||||+|+..|+.+++++|++.|++++..+.+
T Consensus       113 ~~~~~~~~~~~~t~l~~~~~~~~~~~~~~l~~~~~~~~~~----d~~g~TpL~~A~~~g~~~~v~~Ll~~gad~n~~d~~  188 (209)
T d1ot8a_         113 DADINAADNSGKTALHWAAAVNNTEAVNILLMHHANRDAQ----DDKDETPLFLAAREGSYEASKALLDNFANREITDHM  188 (209)
T ss_dssp             TCCTTCBCTTSCBHHHHHHHTTCHHHHHHHHHTTCCTTCC----CTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTT
T ss_pred             cccccccCCCCCCcchhhcccCcceeeeeecccccccccc----ccccccccchhccccHHHHHHHHHHCCCCCCCcCCC
Confidence            3446778999999999999999999999999999999888    899999999999999999999999999999998877


Q ss_pred             CCCChHHHHHHhcCCHHHHHHH
Q 028370          105 ACGWTPLHTAAKERKKEAVRFL  126 (210)
Q Consensus       105 ~~g~tpL~~A~~~g~~~~v~~L  126 (210)
                        |.||||+|+..|+.++|++|
T Consensus       189 --g~Tpl~~A~~~~~~~iv~lL  208 (209)
T d1ot8a_         189 --DRLPRDVASERLHHDIVRLL  208 (209)
T ss_dssp             --SCCHHHHHHHTTCHHHHHHH
T ss_pred             --CCCHHHHHHHcCCHHHHhhc
Confidence              99999999999999999987

>d1iknd_ d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: I-kappa-B-alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.75  E-value=2.4e-19  Score=132.91  Aligned_cols=91  Identities=27%  Similarity=0.349  Sum_probs=70.9

Q ss_pred             CCChHHHHHHHcCCH----HHHHHHHHCCCCccccccCCCCCCCcHHHHHHHCCcHHHHHHHHHcCCCCCcccCCCCCCh
Q 028370           34 RGWTPLHIGARKGDI----KLVKQLLDEGMDVNVAAWGPKSKGVTPLHLAAQGGHLEVMDVLLERGADIDARTKGACGWT  109 (210)
Q Consensus        34 ~g~t~L~~A~~~g~~----~~v~~Ll~~g~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~~g~t  109 (210)
                      +|.||||+|+..|+.    ++++.+...+++++..    |.+|+||||+|+..|+.+++++|++.|++++..+..  |.|
T Consensus         1 dG~t~Lh~A~~~g~~~~~~~li~~~~~~~~~in~~----d~~g~TpLh~A~~~~~~~iv~~L~~~g~d~~~~d~~--g~t   74 (221)
T d1iknd_           1 DGDSFLHLAIIHEEKALTMEVIRQVKGDLAFLNFQ----NNLQQTPLHLAVITNQPEIAEALLGAGCDPELRDFR--GNT   74 (221)
T ss_dssp             CCCCTTHHHHHTTCSSSSSCCCC-----CCCCCCC----CTTCCCHHHHHHHTTCHHHHHCCCSCCCCSCCCCTT--CCC
T ss_pred             CCChHHHHHHHcCCHHHHHHHHHHHHhCCCCcccC----CCCCCccccccccccccccccccccccccccccccc--ccc
Confidence            599999999999996    4555666788999988    999999999999999999999999999999987765  666


Q ss_pred             HHHHHHhcCCHHHHHHHHHcC
Q 028370          110 PLHTAAKERKKEAVRFLIENG  130 (210)
Q Consensus       110 pL~~A~~~g~~~~v~~Ll~~g  130 (210)
                      ||++|+..++.++++.|++.+
T Consensus        75 ~l~~~~~~~~~~~~~~l~~~~   95 (221)
T d1iknd_          75 PLHLACEQGCLASVGVLTQSC   95 (221)
T ss_dssp             HHHHHHHHTCHHHHHHHHHST
T ss_pred             ccccccccccccccchhhhhc
Confidence            666666666666666555543

>d1wdya_ d.211.1.1 (A:) RNase L, 2-5a-dependent ribonuclease {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: RNase L, 2-5a-dependent ribonuclease
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.73  E-value=3e-17  Score=125.27  Aligned_cols=107  Identities=32%  Similarity=0.372  Sum_probs=93.4

Q ss_pred             hhhhcccCCCCChHHHHHHHcC----CHHHHHHHHHCCCCccccccCCCCCCCcHHHHHHHCCcHHHHHHHHH-cCCCCC
Q 028370           25 FRSVIDTDDRGWTPLHIGARKG----DIKLVKQLLDEGMDVNVAAWGPKSKGVTPLHLAAQGGHLEVMDVLLE-RGADID   99 (210)
Q Consensus        25 ~~~~~~~d~~g~t~L~~A~~~g----~~~~v~~Ll~~g~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~-~g~~~~   99 (210)
                      ..+++..|..|.++++.+...+    ..+++++|+++|++++..    +..|.||||+|+..|+.+++++|++ .|++++
T Consensus       172 ~~~i~~~~~~~~~~~~~~~~~~~~~~~~~i~~~Li~~ga~~n~~----~~~g~t~L~~a~~~~~~~~v~~lL~~~g~din  247 (285)
T d1wdya_         172 GADVNACDNMGRNALIHALLSSDDSDVEAITHLLLDHGADVNVR----GERGKTPLILAVEKKHLGLVQRLLEQEHIEIN  247 (285)
T ss_dssp             CCCTTCCCTTSCCHHHHHHHCSCTTTHHHHHHHHHHTTCCSSCC----CTTSCCHHHHHHHTTCHHHHHHHHHSSSCCTT
T ss_pred             CCCcccccCCCCcccccccccccchHHHHHHHHHHHCCCCCCcc----CCCCCCccchhhhcCcHHHHHHHHHcCCCCCc
Confidence            3456778888998887765543    347899999999999987    8999999999999999999999997 589999


Q ss_pred             cccCCCCCChHHHHHHhcCCHHHHHHHHHcCCCCCCCCCC
Q 028370          100 ARTKGACGWTPLHTAAKERKKEAVRFLIENGAFLPDDIND  139 (210)
Q Consensus       100 ~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~g~~~~~~~~~  139 (210)
                      ..+.+  |.||||+|+..|+.+++++|+++||++  +.+|
T Consensus       248 ~~d~~--G~TpL~~A~~~~~~eiv~~Ll~~GAd~--n~~d  283 (285)
T d1wdya_         248 DTDSD--GKTALLLAVELKLKKIAELLCKRGAST--DCGD  283 (285)
T ss_dssp             CCCTT--SCCHHHHHHHTTCHHHHHHHHHHSSCS--CCSS
T ss_pred             CCCCC--CCCHHHHHHHcCCHHHHHHHHHCCCCC--Cccc
Confidence            88877  999999999999999999999999966  6655

>d2ajaa1 a.118.24.1 (A:3-348) Hypothetical protein LPG2416 {Legionella pneumophila [TaxId: 446]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Pseudo ankyrin repeat-like
family: Pseudo ankyrin repeat
domain: Hypothetical protein LPG2416
species: Legionella pneumophila [TaxId: 446]

Probab=99.71  E-value=6.8e-20  Score=145.00  Aligned_cols=105  Identities=17%  Similarity=0.269  Sum_probs=86.9

Q ss_pred             hhhhcccCCCCChHHHHHHHcCCHHHHHHHHHCCCCccccccCCCCCCCcHHHHHHHCCcHHHHHHHHHcCCCCC---cc
Q 028370           25 FRSVIDTDDRGWTPLHIGARKGDIKLVKQLLDEGMDVNVAAWGPKSKGVTPLHLAAQGGHLEVMDVLLERGADID---AR  101 (210)
Q Consensus        25 ~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~---~~  101 (210)
                      ..+++.+|..|+||||+|+++|+.++|++|++.|++++...  .+..|.||||+|+..|+.++|++|++.|++..   ..
T Consensus       116 ~~~in~~~~~g~taL~~Aa~~G~~~~v~~Ll~~g~~~~~~~--~~~~g~t~L~~Aa~~g~~~iv~~Ll~~~~~~~~~~~~  193 (346)
T d2ajaa1         116 DEIVKVIQAENYQAFRLAAENGHLHVLNRLCELAPTEIMAM--IQAENYHAFRLAAENGHLHVLNRLCELAPTEATAMIQ  193 (346)
T ss_dssp             CSSCC--CHHHHHHHHHHHHTTCHHHHHHHHHSCTTTHHHH--HSHHHHHHHHHHHHTTCHHHHHHHHHSCGGGHHHHHH
T ss_pred             CCcccccCCCCCCHHHHHHHCCCHHHHHHHHHcCCCccccc--cccCCCChhHHHHHHhhHHHHHHHHHcCCcccccccc
Confidence            34567788899999999999999999999999999988651  03468999999999999999999999987653   23


Q ss_pred             cCCCCCChHHHHHHhcCCHHHHHHHHHcCCCC
Q 028370          102 TKGACGWTPLHTAAKERKKEAVRFLIENGAFL  133 (210)
Q Consensus       102 ~~~~~g~tpL~~A~~~g~~~~v~~Ll~~g~~~  133 (210)
                      +.+  +.||++.|+..|+.+++++|++.|+++
T Consensus       194 ~~~--~~t~l~~A~~~g~~~iv~~Ll~~ga~~  223 (346)
T d2ajaa1         194 AEN--YYAFRWAAVGRGHHNVINFLLDCPVML  223 (346)
T ss_dssp             HHH--HHHHHHHHSTTCCHHHHHHHTTSHHHH
T ss_pred             cCC--CcchhhHHhhcCHHHHHHHHHhCCCCc
Confidence            333  668888899999999999999998754

>d2fo1e1 d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Lin-12
species: Caenorhabditis elegans [TaxId: 6239]

Probab=99.67  E-value=1.7e-16  Score=120.52  Aligned_cols=95  Identities=27%  Similarity=0.411  Sum_probs=86.2

Q ss_pred             hcccCCCCChHHHHHHHcCCHHHHHHHH-HCCCCccccccCCCCCCCcHHHHHHHCCcHHHHHHHHHcCCCCCcccCCCC
Q 028370           28 VIDTDDRGWTPLHIGARKGDIKLVKQLL-DEGMDVNVAAWGPKSKGVTPLHLAAQGGHLEVMDVLLERGADIDARTKGAC  106 (210)
Q Consensus        28 ~~~~d~~g~t~L~~A~~~g~~~~v~~Ll-~~g~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~~  106 (210)
                      ....+..|.||||+++..++.+.+..++ ..+.+.+..    |..|.||||+|+..|+.+++++|+++|++++.++.+  
T Consensus       180 ~~~~~~~g~t~L~~~~~~~~~~~~~~~l~~~~~~~~~~----d~~g~tpL~~A~~~g~~~iv~~Ll~~gadin~~d~~--  253 (277)
T d2fo1e1         180 KDSEKYKGRTALHYAAQVSNMPIVKYLVGEKGSNKDKQ----DEDGKTPIMLAAQEGRIEVVMYLIQQGASVEAVDAT--  253 (277)
T ss_dssp             TSSSSCCCCCTHHHHHSSCCHHHHHHHHHHSCCCTTCC----CTTCCCHHHHHHHHTCHHHHHHHHHTTCCSSCCCSS--
T ss_pred             ccccccCCCCcccccccccccccccccccccccccccc----CCCCCCHHHHHHHcCCHHHHHHHHHCcCCCCCcCCC--
Confidence            3456778999999999999999998766 567777777    899999999999999999999999999999999887  


Q ss_pred             CChHHHHHHhcCCHHHHHHHHH
Q 028370          107 GWTPLHTAAKERKKEAVRFLIE  128 (210)
Q Consensus       107 g~tpL~~A~~~g~~~~v~~Ll~  128 (210)
                      |.||||+|+..|+.++|++|.+
T Consensus       254 G~T~L~~A~~~~~~~iv~lL~~  275 (277)
T d2fo1e1         254 DHTARQLAQANNHHNIVDIFDR  275 (277)
T ss_dssp             SCCHHHHHHHTTCHHHHHHHHT
T ss_pred             CCCHHHHHHHcCCHHHHHHHHH
Confidence            9999999999999999999985

>d1k1aa_ d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: bcl-3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.62  E-value=2.9e-16  Score=114.61  Aligned_cols=93  Identities=27%  Similarity=0.354  Sum_probs=85.6

Q ss_pred             hhhcccCCCCChHHHHHHHcCCHHHHHHHHHCCCCccccccCCCCCCCcHHHHHHHCCcHHHHHHHHHcCCCCCcccCCC
Q 028370           26 RSVIDTDDRGWTPLHIGARKGDIKLVKQLLDEGMDVNVAAWGPKSKGVTPLHLAAQGGHLEVMDVLLERGADIDARTKGA  105 (210)
Q Consensus        26 ~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~  105 (210)
                      ......+..|.++|+.|+..+...+++.+++.|.+.+..    +..|.||||+|+..|+.+++++|+++|++++.++.+ 
T Consensus       135 ~~~~~~~~~~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~----d~~g~t~L~~A~~~g~~~~v~~Ll~~Gad~n~~d~~-  209 (228)
T d1k1aa_         135 DIDAVDIKSGRSPLIHAVENNSLSMVQLLLQHGANVNAQ----MYSGSSALHSASGRGLLPLVRTLVRSGADSSLKNCH-  209 (228)
T ss_dssp             CTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCB----CTTSCBHHHHHHHHTCHHHHHHHHHTTCCTTCCCTT-
T ss_pred             ccccccccchhhHHHHHHHhhhhhhhhhhhhhccccccc----cccCcchHHHHHHcCCHHHHHHHHHCCCCCCCCCCC-
Confidence            334456778999999999999999999999999998888    899999999999999999999999999999998877 


Q ss_pred             CCChHHHHHHhcCCHHHHH
Q 028370          106 CGWTPLHTAAKERKKEAVR  124 (210)
Q Consensus       106 ~g~tpL~~A~~~g~~~~v~  124 (210)
                       |.||||+|+..|+.++||
T Consensus       210 -G~TpL~~A~~~~~~divk  227 (228)
T d1k1aa_         210 -NDTPLMVARSRRVIDILR  227 (228)
T ss_dssp             -SCCTTTTCSSHHHHHHHT
T ss_pred             -CCCHHHHHHhCCCccccC
Confidence             999999999999999875

>d1sw6a_ d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Swi6 ankyrin-repeat fragment
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.53  E-value=4.3e-15  Score=114.82  Aligned_cols=58  Identities=24%  Similarity=0.330  Sum_probs=50.2

Q ss_pred             CCCCccccccCCCCCCCcHHHHHHHCCcHHHHHHHHHcCCCCCcccCCCCCChHHHHHHhcCC
Q 028370           57 EGMDVNVAAWGPKSKGVTPLHLAAQGGHLEVMDVLLERGADIDARTKGACGWTPLHTAAKERK  119 (210)
Q Consensus        57 ~g~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~~g~tpL~~A~~~g~  119 (210)
                      .+.+++...   |..|+||||+|+..|+.++|++|++.|++++.++..  |.||||.||..++
T Consensus        95 ~~~dvn~~~---D~~G~T~LH~Aa~~g~~~~v~~Ll~~gad~~~~d~~--G~TpL~~A~~~~~  152 (301)
T d1sw6a_          95 TQLNLNIPV---DEHGNTPLHWLTSIANLELVKHLVKHGSNRLYGDNM--GESCLVKAVKSVN  152 (301)
T ss_dssp             SCCCSCSCC---STTCCCHHHHHHHTTCHHHHHHHHHTTCCTTBCCTT--CCCHHHHHHHSSH
T ss_pred             cCCCcCcCc---CCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCcCCcc--cccHHHHhhhccc
Confidence            455666432   788999999999999999999999999999998877  9999999998664