Citrus Sinensis ID: 028374

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210
Protein Sequence
MQLQLRSSSSASALFSAVQVKPPSSPPVRVKALFTKNPGSGTLKNSNSNTNPNPNPMASNPRWAQKTVTLPPLRRGCHLITPKIVKEIAQDLSEFKCGLAHLFLLHTSASLTINENYDSDVRDDTETFLNKIVPELYFVSLLQGRSASWKHTLEGPDDMPAHIKSSMFGCTLTIPITDGQLNMGTWQGIWLCEHRDAPTPRKVVITLNGI
Secondary Structure (PSIPRED)
ccccccccccccEEcccccccccccccccccccccccccccccccccccccccccccccccEEEEEEEEEccccccEEEccHHHHHHHHHHcccccEEEEEEEccccEEEEEEcccccccHHHHHHHHHHHHcccccccccccccccccEEcccccccHHHHHHHHHHcccEEEEEEccEEcccccccEEEEEEcccccccEEEEEEEcc
Secondary Structure Prediction (SSPRO)
ccHHHHHHccHHHHHHHccccccccccccHHHHccccccccccccccccccccccccccccHHHEEEEEccccccccEEccHHHHHHcHHHHHHcHEcHEEEEEHHcccEEEEcccccccHHHHHHHHHHHHcccccccccccccccccEEcccccccccHHHHHHHccccEEEEcccccEEEcccEEEEEEcccccccccEEEEEEEcc
Coil and Loop (DISEMBL)
mqlqlrssssASALFSAvqvkppssppvrvkalftknpgsgtlknsnsntnpnpnpmasnprwaqktvtlpplrrgchlitPKIVKEIAQDLSEFKCGLAHLFLLHTSasltinenydsdvrddTETFLNKIVPELYFVSLLQGrsaswkhtlegpddmpahikssmfgctltipitdgqlnmgtwqgiwlcehrdaptprkVVITLNGI
Flexible Loop (DISEMBL)
MQLQLRSSSSASALFSavqvkppssppvrVKALFTknpgsgtlknsnsntnpnpnpmasnprWAQKTVTLPPLRRGCHLITPKIVKEIAQDLSEFKCGLAHLFLLHTSASLTINENYDSDVRDDTETFLNKIVPELYFVSLLQGRSASWKHTLEGPDDMPAHIKSSMFGCTLTIPITDGQLNMGTWQGIWLcehrdaptprkvvitlngi
Low Complexity Region (SEG)
MqlqlrssssasalfsavqvkppssppvrvkALFTKNPGSGTLKnsnsntnpnpnpmasnpRWAQKTVTLPPLRRGCHLITPKIVKEIAQDLSEFKCGLAHLFLLHTSASLTINENYDSDVRDDTETFLNKIVPELYFVSLLQGRSASWKHTLEGPDDMPAHIKSSMFGCTLTIPITDGQLNMGTWQGIWLCEHRDAPTPRKVVITLNGI
Disordered region (IsUnstruct)
****************************************************************QKTVTLPPLRRGCHLITPKIVKEIAQDLSEFKCGLAHLFLLHTSASLTINENYDSDVRDDTETFLNKIVPELYFVSLLQGRSASWKHTLEG***MPAHIKSSMFGCTLTIPITDGQLNMGTWQGIWLCEHRDAPTPRKVVIT****
Disordered Region (DISOPRED)
*************LFSAVQVKPPSSPPVRVKAL*****************************WAQKTVTLPPLRRGCHLITPKIVKEIAQDLSEFKCGLAHLFLLHTSASLTINENYDSDVRDDTETFLNKIVPELYFVSLLQGRSASWKHTLEGPDDMPAHIKSSMFGCTLTIPITDGQLNMGTWQGIWLCEHRDAPTPRKVVITLNGI
Disordered Region (DISEMBL)
**************************PVRVKALFTKNPGSGTLKNSNSNTNPNPNPMASNPRWAQKTVTLPPLRRGCHLITPKIVKEIAQDLSEFKCGLAHLFLLHTSASLTINENYDSDVRDDTETFLNKIVPELYFVSLLQGRSASWKHTLEGPDDMPAHIKSSMFGCTLTIPITDGQLNMGTWQGIWLCEHRDAPTPRKVVITLNGI
Disordered Region (DISPRO)
***********************************************************NPRWAQKTVTLPPLRRGCHLITPKIVKEIAQDLSEFKCGLAHLFLLHTSASLTINENYDSDVRDDTETFLNKIVPELYFVSLLQGRSASWKHTLEGPDDMPAHIKSSMFGCTLTIPITDGQLNMGTWQGIWLCEHRDAPTPRKVVITLNGI
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MQLQLRSSSSASALFSAVQVKPPSSPPVRVKALFTKNPGSGTLKNSNSNTNPNPNPMASNPRWAQKTVTLPPLRRGCHLITPKIVKEIAQDLSEFKCGLAHLFLLHTSASLTINENYDSDVRDDTETFLNKIVPELYFVSLLQGRSASWKHTLEGPDDMPAHIKSSMFGCTLTIPITDGQLNMGTWQGIWLCEHRDAPTPRKVVITLNGI
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	210	2.2.26 [Sep-21-2011]
P0AF48	138	UPF0047 protein YjbQ OS=E	N/A	no	0.647	0.985	0.469	1e-32
P0AF49	138	UPF0047 protein YjbQ OS=E	N/A	no	0.647	0.985	0.469	1e-32
O14155	142	UPF0047 protein C4A8.02c	yes	no	0.642	0.950	0.465	2e-31
P0A2L1	138	UPF0047 protein YjbQ OS=S	yes	no	0.647	0.985	0.489	8e-28
P0A2L2	138	UPF0047 protein YjbQ OS=S	N/A	no	0.647	0.985	0.489	8e-28
P74125	147	UPF0047 protein sll1880 O	N/A	no	0.671	0.959	0.394	4e-23
Q58481	138	UPF0047 protein MJ1081 OS	yes	no	0.538	0.818	0.404	1e-16
O05243	132	UPF0047 protein YugU OS=B	yes	no	0.528	0.840	0.330	9e-12
O26865	143	UPF0047 protein MTH_771 O	yes	no	0.595	0.874	0.271	2e-08
O28229	126	UPF0047 protein AF_2050 O	yes	no	0.466	0.777	0.309	4e-08

>sp|P0AF48|YJBQ_ECOLI UPF0047 protein YjbQ OS=Escherichia coli (strain K12) GN=yjbQ PE=3 SV=1

 Score =  139 bits (351), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 69/147 (46%), Positives = 92/147 (62%), Gaps = 11/147 (7%)

Query: 63  WAQKTVTLPPLRRGCHLITPKIVKEIAQDLSEFKCGLAHLFLLHTSASLTINENYDSDVR 122
           W QKT+TL    RG HL+T +I+ ++A D+     GL HL L HTSASLT+NEN D  VR
Sbjct: 2   WYQKTLTLSAKSRGFHLVTDEILNQLA-DMPRVNIGLLHLLLQHTSASLTLNENCDPTVR 60

Query: 123 DDTETFLNKIVPELYFVSLLQGRSASWKHTLEGPDDMPAHIKSSMFGCTLTIPITDGQLN 182
            D E F  + VP+          + +++H  EG DDMP+HIKSSM G +L +P+  G++ 
Sbjct: 61  HDMERFFLRTVPD----------NGNYEHDYEGADDMPSHIKSSMLGTSLVLPVHKGRIQ 110

Query: 183 MGTWQGIWLCEHRDAPTPRKVVITLNG 209
            GTWQGIWL EHR     R+++ TL G
Sbjct: 111 TGTWQGIWLGEHRIHGGSRRIIATLQG 137

Escherichia coli (strain K12) (taxid: 83333)

>sp|P0AF49|YJBQ_ECO57 UPF0047 protein YjbQ OS=Escherichia coli O157:H7 GN=yjbQ PE=3 SV=1

 Score =  139 bits (351), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 69/147 (46%), Positives = 92/147 (62%), Gaps = 11/147 (7%)

Query: 63  WAQKTVTLPPLRRGCHLITPKIVKEIAQDLSEFKCGLAHLFLLHTSASLTINENYDSDVR 122
           W QKT+TL    RG HL+T +I+ ++A D+     GL HL L HTSASLT+NEN D  VR
Sbjct: 2   WYQKTLTLSAKSRGFHLVTDEILNQLA-DMPRVNIGLLHLLLQHTSASLTLNENCDPTVR 60

Query: 123 DDTETFLNKIVPELYFVSLLQGRSASWKHTLEGPDDMPAHIKSSMFGCTLTIPITDGQLN 182
            D E F  + VP+          + +++H  EG DDMP+HIKSSM G +L +P+  G++ 
Sbjct: 61  HDMERFFLRTVPD----------NGNYEHDYEGADDMPSHIKSSMLGTSLVLPVHKGRIQ 110

Query: 183 MGTWQGIWLCEHRDAPTPRKVVITLNG 209
            GTWQGIWL EHR     R+++ TL G
Sbjct: 111 TGTWQGIWLGEHRIHGGSRRIIATLQG 137

Escherichia coli O157:H7 (taxid: 83334)

>sp|O14155|YE72_SCHPO UPF0047 protein C4A8.02c OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPAC4A8.02c PE=3 SV=1

 Score =  135 bits (340), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 68/146 (46%), Positives = 96/146 (65%), Gaps = 11/146 (7%)

Query: 65  QKTVTLPPLRRGCHLITPKIVKEIAQDLSEFKCGLAHLFLLHTSASLTINENYDSDVRDD 124
           Q+ +TL    +G ++IT  +VK++ + L  F  G  + F+ HTSA+LTINEN+D+D R D
Sbjct: 5   QRIITLDRRSKGFYIITNDLVKKLPE-LKSFSSGTVNFFIQHTSAALTINENWDADTRAD 63

Query: 125 TETFLNKIVPELYFVSLLQGRSASWKHTLEGPDDMPAHIKSSMFGCTLTIPITDGQLNMG 184
               L+KIVPE          SA ++HT EG DDMPAH+KSS+ G +LT+PIT+G+L++G
Sbjct: 64  MNDILDKIVPE----------SAGYRHTAEGLDDMPAHVKSSLIGPSLTVPITNGKLSLG 113

Query: 185 TWQGIWLCEHRDAPTPRKVVITLNGI 210
           TWQ I L E R  P  R +V T+ G+
Sbjct: 114 TWQDIQLAEFRRQPHSRTIVCTIIGL 139

Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812)

>sp|P0A2L1|YJBQ_SALTY UPF0047 protein YjbQ OS=Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720) GN=yjbQ PE=3 SV=1

 Score =  123 bits (309), Expect = 8e-28,   Method: Compositional matrix adjust.
 Identities = 72/147 (48%), Positives = 94/147 (63%), Gaps = 11/147 (7%)

Query: 63  WAQKTVTLPPLRRGCHLITPKIVKEIAQDLSEFKCGLAHLFLLHTSASLTINENYDSDVR 122
           W Q+T+TL    RG HLIT +I  +++  L   + GL HL LLHTSASLT+NEN D  VR
Sbjct: 2   WYQRTITLSEKPRGFHLITDEITDKLS-GLPPVETGLLHLLLLHTSASLTLNENCDPTVR 60

Query: 123 DDTETFLNKIVPELYFVSLLQGRSASWKHTLEGPDDMPAHIKSSMFGCTLTIPITDGQLN 182
            D E    K VP+          +A+++H  EG DDMP+HIKSS+ G +L +P+  G+L 
Sbjct: 61  ADMERHFLKTVPD----------NAAYEHDYEGADDMPSHIKSSVLGVSLLLPVRQGRLQ 110

Query: 183 MGTWQGIWLCEHRDAPTPRKVVITLNG 209
           +GTWQGIWL EHR    PRK++ TL G
Sbjct: 111 LGTWQGIWLGEHRIHGGPRKIIATLQG 137

Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720) (taxid: 99287)

>sp|P0A2L2|YJBQ_SALTI UPF0047 protein YjbQ OS=Salmonella typhi GN=yjbQ PE=3 SV=1

 Score =  123 bits (309), Expect = 8e-28,   Method: Compositional matrix adjust.
 Identities = 72/147 (48%), Positives = 94/147 (63%), Gaps = 11/147 (7%)

Query: 63  WAQKTVTLPPLRRGCHLITPKIVKEIAQDLSEFKCGLAHLFLLHTSASLTINENYDSDVR 122
           W Q+T+TL    RG HLIT +I  +++  L   + GL HL LLHTSASLT+NEN D  VR
Sbjct: 2   WYQRTITLSEKPRGFHLITDEITDKLS-GLPPVETGLLHLLLLHTSASLTLNENCDPTVR 60

Query: 123 DDTETFLNKIVPELYFVSLLQGRSASWKHTLEGPDDMPAHIKSSMFGCTLTIPITDGQLN 182
            D E    K VP+          +A+++H  EG DDMP+HIKSS+ G +L +P+  G+L 
Sbjct: 61  ADMERHFLKTVPD----------NAAYEHDYEGADDMPSHIKSSVLGVSLLLPVRQGRLQ 110

Query: 183 MGTWQGIWLCEHRDAPTPRKVVITLNG 209
           +GTWQGIWL EHR    PRK++ TL G
Sbjct: 111 LGTWQGIWLGEHRIHGGPRKIIATLQG 137

Salmonella typhi (taxid: 90370)

>sp|P74125|Y1880_SYNY3 UPF0047 protein sll1880 OS=Synechocystis sp. (strain PCC 6803 / Kazusa) GN=sll1880 PE=3 SV=1

 Score =  107 bits (268), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 60/152 (39%), Positives = 88/152 (57%), Gaps = 11/152 (7%)

Query: 58  ASNPRWAQKTVTLPPLRRGCHLITPKIVKEIAQDLSEFKCGLAHLFLLHTSASLTINENY 117
           A+  R  Q+ + +    +  H    KI + + Q  S  K GL  +F+ HTSASL I EN 
Sbjct: 5   AATFRQHQEILVIATQGKSLHNFNSKI-QAVVQH-SGVKTGLCTVFVRHTSASLIIQENA 62

Query: 118 DSDVRDDTETFLNKIVPELYFVSLLQGRSASWKHTLEGPDDMPAHIKSSMFGCTLTIPIT 177
           D DV  D   F  ++VPE        GR   ++H+ EG DDMPAHI+S++   +  IPI 
Sbjct: 63  DPDVLTDLAIFFAQLVPE-------DGRR--YRHSTEGLDDMPAHIRSALTKTSEHIPIV 113

Query: 178 DGQLNMGTWQGIWLCEHRDAPTPRKVVITLNG 209
           +G+L +GTWQG++L EHR  P  R+V++ ++G
Sbjct: 114 NGRLGLGTWQGVFLWEHRQRPHQREVIVHVSG 145

Synechocystis sp. (strain PCC 6803 / Kazusa) (taxid: 1111708)

>sp|Q58481|Y1081_METJA UPF0047 protein MJ1081 OS=Methanocaldococcus jannaschii (strain ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC 100440) GN=MJ1081 PE=3 SV=1

 Score = 86.3 bits (212), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 53/131 (40%), Positives = 77/131 (58%), Gaps = 18/131 (13%)

Query: 80  ITPKIVKEIAQDLSEFKCGLAHLFLLHTSASLTINENYDSDVRDDTETFLNKIVPELYFV 139
           ITP I+  I++  S+ K G+A +++ HT+A +TINEN D  V+ D   FL+ ++P+    
Sbjct: 23  ITPYIISAISE--SKVKDGIAVIYVPHTTAGITINENADPSVKHDIINFLSHLIPK---- 76

Query: 140 SLLQGRSASWKHT-LEGPDDMPAHIKSSMFGCTLTIPITDGQLNMGTWQGIWLCEHRDAP 198
                   +W  T LEG  D  AHIKSS+ GC+ TI I DG+  +GTWQGI+  E  D P
Sbjct: 77  --------NWNFTHLEGNSD--AHIKSSLVGCSQTIIIKDGKPLLGTWQGIFFAEF-DGP 125

Query: 199 TPRKVVITLNG 209
             R+  + + G
Sbjct: 126 RRREFYVKIIG 136

Methanocaldococcus jannaschii (strain ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC 100440) (taxid: 243232)

>sp|O05243|YUGU_BACSU UPF0047 protein YugU OS=Bacillus subtilis (strain 168) GN=yugU PE=3 SV=2

 Score = 70.1 bits (170), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 43/130 (33%), Positives = 65/130 (50%), Gaps = 19/130 (14%)

Query: 84  IVKEIAQDLSE--FKCGLAHLFLLHTSASLTINENYDSDVRDDTETFLNKIVPELYFVSL 141
           I +E+   L E     G A ++  HT+A +TINEN D DV+ D     +++ P       
Sbjct: 18  ITREVEAFLQETGITSGAALIYCPHTTAGITINENADPDVKKDMLRRFDEVYP------- 70

Query: 142 LQGRSASWKHTLEG--PDDMPAHIKSSMFGCTLTIPITDGQLNMGTWQGIWLCEHRDAPT 199
                  W+H L+     +  AH+KSS  G +  + + +G+L +GTWQGI+ CE  D P 
Sbjct: 71  -------WEHELDRHMEGNTAAHMKSSTVGASQHVIVENGRLILGTWQGIYFCEF-DGPR 122

Query: 200 PRKVVITLNG 209
            R   I + G
Sbjct: 123 TRTCYIKMMG 132

Bacillus subtilis (strain 168) (taxid: 224308)

>sp|O26865|Y771_METTH UPF0047 protein MTH_771 OS=Methanothermobacter thermautotrophicus (strain ATCC 29096 / DSM 1053 / JCM 10044 / NBRC 100330 / Delta H) GN=MTH_771 PE=3 SV=1

 Score = 59.3 bits (142), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 38/140 (27%), Positives = 73/140 (52%), Gaps = 15/140 (10%)

Query: 72  PLR--RGCHLITPKIVKEIAQDLSEFKCGLAHLFLLHTSASLTINENYDSDVRDDTETFL 129
           PLR  R   LI    +     + S  + G+ ++F  H+++++ INEN +S +  D E+ L
Sbjct: 15  PLRTSRRVELIDITSMVSGVLESSGIRNGILNVFSRHSTSAIFINEN-ESRLLSDIESML 73

Query: 130 NKIVPELYFVSLLQGRSASWKHTLEGPDDMPAHIKSSMFGCTLTIPITDGQLNMGTWQGI 189
              VP            AS+ H     ++  +H+++ + G + T+P+ +G +++GTWQ I
Sbjct: 74  EGTVPV----------DASYGHNAI-DNNADSHLRAVLLGGSQTVPVINGSMDLGTWQSI 122

Query: 190 WLCEHRDAPTPRKVVITLNG 209
           +  E  D P  R++ +++ G
Sbjct: 123 FFAE-LDGPRNRRIRVSVAG 141

Methanothermobacter thermautotrophicus (strain ATCC 29096 / DSM 1053 / JCM 10044 / NBRC 100330 / Delta H) (taxid: 187420)

>sp|O28229|Y2050_ARCFU UPF0047 protein AF_2050 OS=Archaeoglobus fulgidus (strain ATCC 49558 / VC-16 / DSM 4304 / JCM 9628 / NBRC 100126) GN=AF_2050 PE=3 SV=1

 Score = 58.2 bits (139), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 35/113 (30%), Positives = 60/113 (53%), Gaps = 15/113 (13%)

Query: 94  EFKCGLAHLFLLHTSASLTINENYDSDVRDDTETFLNKIVPELYFVSLLQGRSASWKHT- 152
           E + GL  ++  HT+ +L INE  +  + +D   F+ K+VP              +KH  
Sbjct: 25  ESRDGLVLVYTPHTTTALVINEG-ERGLLEDILEFMEKLVP----------YGKGYKHDR 73

Query: 153 LEGPDDMPAHIKSSMFGCTLTIPITDGQLNMGTWQGIWLCEHRDAPTPRKVVI 205
           L+   D  AH+K+++ G ++ +P+  G+L +GTWQ I   E  D P  R+V++
Sbjct: 74  LDSNAD--AHLKATLLGNSVVVPVESGKLALGTWQRILFLEF-DGPRTRRVIV 123

Archaeoglobus fulgidus (strain ATCC 49558 / VC-16 / DSM 4304 / JCM 9628 / NBRC 100126) (taxid: 224325)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	210
255539386	195	conserved hypothetical protein [Ricinus	0.895	0.964	0.695	1e-71
224065613	163	predicted protein [Populus trichocarpa]	0.776	1.0	0.737	4e-71
449455657	185	PREDICTED: UPF0047 protein C4A8.02c-like	0.847	0.962	0.705	5e-71
225457713	236	PREDICTED: uncharacterized protein LOC10	0.852	0.758	0.697	6e-71
118481865	147	unknown [Populus trichocarpa]	0.685	0.979	0.848	1e-70
297845088	218	hypothetical protein ARALYDRAFT_472344 [	0.866	0.834	0.650	2e-70
297745635	148	unnamed protein product [Vitis vinifera]	0.676	0.959	0.833	6e-69
351723809	179	uncharacterized protein LOC100500593 [Gl	0.814	0.955	0.686	6e-69
356521568	175	PREDICTED: UPF0047 protein yjbQ-like [Gl	0.676	0.811	0.833	7e-69
357475211	173	hypothetical protein MTR_4g084120 [Medic	0.695	0.843	0.798	2e-68

>gi|255539386|ref|XP_002510758.1| conserved hypothetical protein [Ricinus communis] gi|223551459|gb|EEF52945.1| conserved hypothetical protein [Ricinus communis]

 Score =  274 bits (701), Expect = 1e-71,   Method: Compositional matrix adjust.
 Identities = 144/207 (69%), Positives = 155/207 (74%), Gaps = 19/207 (9%)

Query: 9   SSASALFSAVQVKP----PSSPPV-RVKALFTKNPGSGTLKNSNSNTNPNPNPMASNPRW 63
           +SA   FS+   KP     S+ PV RV +L+T  P S T      N + N     S  +W
Sbjct: 3   ASAHLWFSSSAPKPVWLSASAAPVPRVNSLYTAKPSSLT------NDSNNSMATTSTSKW 56

Query: 64  AQKTVTLPPLRRGCHLITPKIVKEIAQDLSEFKCGLAHLFLLHTSASLTINENYDSDVRD 123
           AQKTVTL P RRGCHLIT KI+ EI  DLSEFKCGLAHLF+ HTSASLTINENYDSDVRD
Sbjct: 57  AQKTVTLSPHRRGCHLITSKILNEIGSDLSEFKCGLAHLFIQHTSASLTINENYDSDVRD 116

Query: 124 DTETFLNKIVPELYFVSLLQGRSASWKHTLEGPDDMPAHIKSSMFGCTLTIPITDGQLNM 183
           DTETFLNKIVPE        GRSA WKHTLEGPDDMPAHIKSSMFGC LTIPIT+G+LNM
Sbjct: 117 DTETFLNKIVPE--------GRSAPWKHTLEGPDDMPAHIKSSMFGCQLTIPITNGKLNM 168

Query: 184 GTWQGIWLCEHRDAPTPRKVVITLNGI 210
           GTWQGIWLCEHRD PT RKVVITLNGI
Sbjct: 169 GTWQGIWLCEHRDHPTARKVVITLNGI 195

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224065613|ref|XP_002301884.1| predicted protein [Populus trichocarpa] gi|222843610|gb|EEE81157.1| predicted protein [Populus trichocarpa]

 Score =  273 bits (697), Expect = 4e-71,   Method: Compositional matrix adjust.
 Identities = 135/183 (73%), Positives = 147/183 (80%), Gaps = 20/183 (10%)

Query: 28  VRVKALFTKNPGSGTLKNSNSNTNPNPNPMASNPRWAQKTVTLPPLRRGCHLITPKIVKE 87
           +RV +L+T  P   +  +S +          S P+WAQKT+TLPP RRGCHLITPKI+ E
Sbjct: 1   LRVSSLYTAKP---SFSDSMA---------TSAPKWAQKTITLPPHRRGCHLITPKILNE 48

Query: 88  IAQDLSEFKCGLAHLFLLHTSASLTINENYDSDVRDDTETFLNKIVPELYFVSLLQGRSA 147
           I  DLSEFKCGLAHLFL HTSASLTINENYDSDVRDDTETFLNKIVPE        GRSA
Sbjct: 49  IGSDLSEFKCGLAHLFLHHTSASLTINENYDSDVRDDTETFLNKIVPE--------GRSA 100

Query: 148 SWKHTLEGPDDMPAHIKSSMFGCTLTIPITDGQLNMGTWQGIWLCEHRDAPTPRKVVITL 207
            WKHTLEGPDDMPAHIKSSMFGC+LTIPITDG+LNMGTWQGIWLCEHRD PT RKVV+TL
Sbjct: 101 PWKHTLEGPDDMPAHIKSSMFGCSLTIPITDGKLNMGTWQGIWLCEHRDHPTARKVVVTL 160

Query: 208 NGI 210
           NGI
Sbjct: 161 NGI 163

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449455657|ref|XP_004145568.1| PREDICTED: UPF0047 protein C4A8.02c-like isoform 1 [Cucumis sativus]

 Score =  272 bits (696), Expect = 5e-71,   Method: Compositional matrix adjust.
 Identities = 132/187 (70%), Positives = 152/187 (81%), Gaps = 9/187 (4%)

Query: 24  SSPPVRVKALFTKNPGSGTLKNSNSNTNPNPNPMASNPRWAQKTVTLPPLRRGCHLITPK 83
           ++ P+RVK L + N  +G    +  ++NP+    A+ P+WAQKTVTL P RRGCHLITPK
Sbjct: 8   AAQPLRVKLLRSNNSSTGNPSATAGSSNPS-FMAAAGPKWAQKTVTLSPHRRGCHLITPK 66

Query: 84  IVKEIAQDLSEFKCGLAHLFLLHTSASLTINENYDSDVRDDTETFLNKIVPELYFVSLLQ 143
           I+KEI QDLSEFKCGLAH+FL HTSASLTINENYDSDV++DTETFLNKIVPE        
Sbjct: 67  IMKEIGQDLSEFKCGLAHIFLQHTSASLTINENYDSDVQNDTETFLNKIVPE-------- 118

Query: 144 GRSASWKHTLEGPDDMPAHIKSSMFGCTLTIPITDGQLNMGTWQGIWLCEHRDAPTPRKV 203
           G SA WKHTLEGPDDMPAHIKSS+FGC LTIPIT+G+LNMGTWQGIWLCEHRD PT R +
Sbjct: 119 GTSAPWKHTLEGPDDMPAHIKSSLFGCALTIPITNGKLNMGTWQGIWLCEHRDHPTARNI 178

Query: 204 VITLNGI 210
           V+TLNGI
Sbjct: 179 VVTLNGI 185

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225457713|ref|XP_002277414.1| PREDICTED: uncharacterized protein LOC100252976 isoform 1 [Vitis vinifera]

 Score =  272 bits (696), Expect = 6e-71,   Method: Compositional matrix adjust.
 Identities = 136/195 (69%), Positives = 152/195 (77%), Gaps = 16/195 (8%)

Query: 17  AVQVKPP-SSPPVRVKALFTKNPGSGTLKNSNSNTNPNPNPMASNPRWAQKTVTLPPLRR 75
           ++  KPP +S  +RVK+L+T         + N  T+         P+WAQKT+TLPP RR
Sbjct: 57  SLGAKPPLTSHQIRVKSLYTPT-------SFNDPTDSTSMAAIPAPKWAQKTITLPPQRR 109

Query: 76  GCHLITPKIVKEIAQDLSEFKCGLAHLFLLHTSASLTINENYDSDVRDDTETFLNKIVPE 135
           GCH ITPKI+KEI QDLS FKCGLAHLF+ HTSASLTINENYDSDVRDDTETFL+KIVPE
Sbjct: 110 GCHHITPKILKEIGQDLSGFKCGLAHLFIQHTSASLTINENYDSDVRDDTETFLSKIVPE 169

Query: 136 LYFVSLLQGRSASWKHTLEGPDDMPAHIKSSMFGCTLTIPITDGQLNMGTWQGIWLCEHR 195
                   GRSA WKHTLEGPDDMPAHIKSSMFGC+LTIPITDGQLNMGTWQGIWLCEHR
Sbjct: 170 --------GRSAPWKHTLEGPDDMPAHIKSSMFGCSLTIPITDGQLNMGTWQGIWLCEHR 221

Query: 196 DAPTPRKVVITLNGI 210
           D  T RKVV+TLNG+
Sbjct: 222 DRATARKVVVTLNGV 236

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|118481865|gb|ABK92869.1| unknown [Populus trichocarpa]

 Score =  271 bits (693), Expect = 1e-70,   Method: Compositional matrix adjust.
 Identities = 129/152 (84%), Positives = 135/152 (88%), Gaps = 8/152 (5%)

Query: 59  SNPRWAQKTVTLPPLRRGCHLITPKIVKEIAQDLSEFKCGLAHLFLLHTSASLTINENYD 118
           S P+WAQKT+TLPP RRGCHLITPKI+ EI  DLSEFKCGLAHLFL HTSASLTINENYD
Sbjct: 4   SAPKWAQKTITLPPHRRGCHLITPKILNEIGSDLSEFKCGLAHLFLHHTSASLTINENYD 63

Query: 119 SDVRDDTETFLNKIVPELYFVSLLQGRSASWKHTLEGPDDMPAHIKSSMFGCTLTIPITD 178
           SDVRDDTETFLNKIVPE        GRSA WKHTLEGPDDMPAHIKSSMFGC+LTIPITD
Sbjct: 64  SDVRDDTETFLNKIVPE--------GRSAPWKHTLEGPDDMPAHIKSSMFGCSLTIPITD 115

Query: 179 GQLNMGTWQGIWLCEHRDAPTPRKVVITLNGI 210
           G+LNMGTWQGIWLCEHRD PT RKVV+TLNGI
Sbjct: 116 GKLNMGTWQGIWLCEHRDHPTARKVVVTLNGI 147

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297845088|ref|XP_002890425.1| hypothetical protein ARALYDRAFT_472344 [Arabidopsis lyrata subsp. lyrata] gi|297336267|gb|EFH66684.1| hypothetical protein ARALYDRAFT_472344 [Arabidopsis lyrata subsp. lyrata]

 Score =  270 bits (691), Expect = 2e-70,   Method: Compositional matrix adjust.
 Identities = 134/206 (65%), Positives = 156/206 (75%), Gaps = 24/206 (11%)

Query: 5   LRSSSSASALFSAVQVKPPSSPPVRVKALFTKNPGSGTLKNSNSNTNPNPNPMASNPRWA 64
           L++  S++ LFS V        P+RV+++ T          +N  T+      +S P+WA
Sbjct: 37  LKAMQSSTILFSGVV-------PLRVRSVLTP---------ANPATDRASMASSSGPKWA 80

Query: 65  QKTVTLPPLRRGCHLITPKIVKEIAQDLSEFKCGLAHLFLLHTSASLTINENYDSDVRDD 124
           QKT+TLPPLRRGCHLITPKIVKEI QDLS+F CGLAH+FL HTSASLTINENYD DV+ D
Sbjct: 81  QKTITLPPLRRGCHLITPKIVKEIGQDLSDFNCGLAHVFLQHTSASLTINENYDPDVQAD 140

Query: 125 TETFLNKIVPELYFVSLLQGRSASWKHTLEGPDDMPAHIKSSMFGCTLTIPITDGQLNMG 184
           TETFLN+IVPE        G SA W+HT+EGPDDMPAHIKSSMFGC LTIPIT G+LNMG
Sbjct: 141 TETFLNRIVPE--------GNSAPWRHTMEGPDDMPAHIKSSMFGCQLTIPITKGKLNMG 192

Query: 185 TWQGIWLCEHRDAPTPRKVVITLNGI 210
           TWQGIWLCEHRDAPT R+VV+TLNGI
Sbjct: 193 TWQGIWLCEHRDAPTARRVVVTLNGI 218

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297745635|emb|CBI40800.3| unnamed protein product [Vitis vinifera]

 Score =  266 bits (679), Expect = 6e-69,   Method: Compositional matrix adjust.
 Identities = 125/150 (83%), Positives = 133/150 (88%), Gaps = 8/150 (5%)

Query: 61  PRWAQKTVTLPPLRRGCHLITPKIVKEIAQDLSEFKCGLAHLFLLHTSASLTINENYDSD 120
           P+WAQKT+TLPP RRGCH ITPKI+KEI QDLS FKCGLAHLF+ HTSASLTINENYDSD
Sbjct: 7   PKWAQKTITLPPQRRGCHHITPKILKEIGQDLSGFKCGLAHLFIQHTSASLTINENYDSD 66

Query: 121 VRDDTETFLNKIVPELYFVSLLQGRSASWKHTLEGPDDMPAHIKSSMFGCTLTIPITDGQ 180
           VRDDTETFL+KIVPE        GRSA WKHTLEGPDDMPAHIKSSMFGC+LTIPITDGQ
Sbjct: 67  VRDDTETFLSKIVPE--------GRSAPWKHTLEGPDDMPAHIKSSMFGCSLTIPITDGQ 118

Query: 181 LNMGTWQGIWLCEHRDAPTPRKVVITLNGI 210
           LNMGTWQGIWLCEHRD  T RKVV+TLNG+
Sbjct: 119 LNMGTWQGIWLCEHRDRATARKVVVTLNGV 148

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|351723809|ref|NP_001236524.1| uncharacterized protein LOC100500593 [Glycine max] gi|255630716|gb|ACU15719.1| unknown [Glycine max]

 Score =  265 bits (678), Expect = 6e-69,   Method: Compositional matrix adjust.
 Identities = 129/188 (68%), Positives = 146/188 (77%), Gaps = 17/188 (9%)

Query: 23  PSSPPVRVKALFTKNPGSGTLKNSNSNTNPNPNPMASNPRWAQKTVTLPPLRRGCHLITP 82
           P+  PVRVK+L T         N  +  +P      + P+WAQKT+TLPPL+RGCHLIT 
Sbjct: 9   PAKVPVRVKSLHT---------NPATVNDPTSTAKVAAPKWAQKTITLPPLKRGCHLITS 59

Query: 83  KIVKEIAQDLSEFKCGLAHLFLLHTSASLTINENYDSDVRDDTETFLNKIVPELYFVSLL 142
           KIVKE+ Q+LSE++CGLAHLFL HTSASLTINENYD DVRDDTETFLN +VPE       
Sbjct: 60  KIVKEVRQELSEYQCGLAHLFLHHTSASLTINENYDYDVRDDTETFLNGMVPE------- 112

Query: 143 QGRSASWKHTLEGPDDMPAHIKSSMFGCTLTIPITDGQLNMGTWQGIWLCEHRDAPTPRK 202
            G SA WKHTLEGPDDMPAHIKSSMFGC L IPI++G+LNMGTWQGIWLCEHRD PTPR 
Sbjct: 113 -GPSAPWKHTLEGPDDMPAHIKSSMFGCALMIPISNGKLNMGTWQGIWLCEHRDYPTPRT 171

Query: 203 VVITLNGI 210
           VV+TLNGI
Sbjct: 172 VVVTLNGI 179

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356521568|ref|XP_003529426.1| PREDICTED: UPF0047 protein yjbQ-like [Glycine max]

 Score =  265 bits (678), Expect = 7e-69,   Method: Compositional matrix adjust.
 Identities = 125/150 (83%), Positives = 134/150 (89%), Gaps = 8/150 (5%)

Query: 61  PRWAQKTVTLPPLRRGCHLITPKIVKEIAQDLSEFKCGLAHLFLLHTSASLTINENYDSD 120
           P+WAQKTV+LPPLRRGCHL+T KIVKEI QDLS FKCGLAHLFL HTSASLTINENYDSD
Sbjct: 34  PKWAQKTVSLPPLRRGCHLVTSKIVKEIEQDLSGFKCGLAHLFLQHTSASLTINENYDSD 93

Query: 121 VRDDTETFLNKIVPELYFVSLLQGRSASWKHTLEGPDDMPAHIKSSMFGCTLTIPITDGQ 180
           VR+DTETFLN+IVPE        G SA WKHTLEGPDDMPAHIKSSMFGCTLTIPIT+G+
Sbjct: 94  VREDTETFLNRIVPE--------GSSAPWKHTLEGPDDMPAHIKSSMFGCTLTIPITNGK 145

Query: 181 LNMGTWQGIWLCEHRDAPTPRKVVITLNGI 210
           LNMGTWQGIWLCEHRD PT R+VV+TLNGI
Sbjct: 146 LNMGTWQGIWLCEHRDHPTSRRVVVTLNGI 175

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357475211|ref|XP_003607891.1| hypothetical protein MTR_4g084120 [Medicago truncatula] gi|85719357|gb|ABC75362.1| Protein of unknown function UPF0047 [Medicago truncatula] gi|355508946|gb|AES90088.1| hypothetical protein MTR_4g084120 [Medicago truncatula]

 Score =  264 bits (674), Expect = 2e-68,   Method: Compositional matrix adjust.
 Identities = 123/154 (79%), Positives = 133/154 (86%), Gaps = 8/154 (5%)

Query: 57  MASNPRWAQKTVTLPPLRRGCHLITPKIVKEIAQDLSEFKCGLAHLFLLHTSASLTINEN 116
           MA+ P+WAQKT+ LPP +RGCHL+TPKI KEI QDLS FKCGLAHLFL HTSASLTINEN
Sbjct: 28  MATAPKWAQKTIALPPYKRGCHLVTPKIAKEIEQDLSGFKCGLAHLFLQHTSASLTINEN 87

Query: 117 YDSDVRDDTETFLNKIVPELYFVSLLQGRSASWKHTLEGPDDMPAHIKSSMFGCTLTIPI 176
           YD+DVRDDTETFLN+IVPE        G SA WKHTLEG DDMPAHIKSSMFGC LTIPI
Sbjct: 88  YDTDVRDDTETFLNRIVPE--------GPSAPWKHTLEGHDDMPAHIKSSMFGCALTIPI 139

Query: 177 TDGQLNMGTWQGIWLCEHRDAPTPRKVVITLNGI 210
           TDG+LNMGTWQGIWLCEHRD PT R+VV+TLNGI
Sbjct: 140 TDGKLNMGTWQGIWLCEHRDHPTSRRVVVTLNGI 173

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	210
TAIR|locus:505006137	217	AT1G21065 "AT1G21065" [Arabido	0.671	0.649	0.785	1.4e-62
FB|FBgn0263355	687	CG31688 [Drosophila melanogast	0.647	0.197	0.530	1.3e-38
UNIPROTKB|Q47W13	139	CPS_4360 "Putative uncharacter	0.652	0.985	0.482	9.5e-34
TIGR_CMR|CPS_4360	139	CPS_4360 "conserved hypothetic	0.652	0.985	0.482	9.5e-34
UNIPROTKB|Q60BB8	139	MCA0559 "Putative uncharacteri	0.652	0.985	0.496	5.2e-33
UNIPROTKB|G4MUS6	210	MGG_01675 "Uncharacterized pro	0.819	0.819	0.426	6.7e-33
UNIPROTKB|Q88B14	141	PSPTO_0219 "Uncharacterized pr	0.652	0.971	0.489	5.4e-31
UNIPROTKB|Q9KUY5	139	VC_0373 "Putative uncharacteri	0.652	0.985	0.489	8.8e-31
TIGR_CMR|VC_0373	139	VC_0373 "conserved hypothetica	0.652	0.985	0.489	8.8e-31
CGD|CAL0001350	141	orf19.3016 [Candida albicans (	0.647	0.964	0.455	1.4e-30

TAIR|locus:505006137 AT1G21065 "AT1G21065" [Arabidopsis thaliana (taxid:3702)]

 Score = 639 (230.0 bits), Expect = 1.4e-62, P = 1.4e-62
 Identities = 117/149 (78%), Positives = 131/149 (87%)

Query:    62 RWAQKTVTLPPLRRGCHLITPKIVKEIAQDLSEFKCGLAHLFLLHTSASLTINENYDSDV 121
             +WAQKT+TLPPLRRGCHLITPKI+KEI +DLS+F CGLAH+FL HTSASLTINENYD DV
Sbjct:    77 KWAQKTITLPPLRRGCHLITPKILKEIREDLSDFNCGLAHVFLQHTSASLTINENYDPDV 136

Query:   122 RDDTETFLNKIVPELYFVSLLQGRSASWKHTLEGPDDMPAHIKSSMFGCTLTIPITDGQL 181
             + DTETFLN+IVPE        G SA W+HT+EGPDDMPAHIKSSMFGC LTIPIT G+L
Sbjct:   137 QADTETFLNRIVPE--------GNSAPWRHTMEGPDDMPAHIKSSMFGCQLTIPITKGKL 188

Query:   182 NMGTWQGIWLCEHRDAPTPRKVVITLNGI 210
             +MGTWQGIWLCEHRDAPT R+VV+TLNGI
Sbjct:   189 SMGTWQGIWLCEHRDAPTARRVVVTLNGI 217

GO:0008150 "biological_process" evidence=ND

GO:0009507 "chloroplast" evidence=IDA

FB|FBgn0263355 CG31688 [Drosophila melanogaster (taxid:7227)]

 Score = 418 (152.2 bits), Expect = 1.3e-38, P = 1.3e-38
 Identities = 78/147 (53%), Positives = 104/147 (70%)

Query:    63 WAQKTVTLPPLRRGCHLITPKIVKEIAQDLSEFKCGLAHLFLLHTSASLTINENYDSDVR 122
             W Q+ + L P  RG HL+T +I++++ + L+ F  GL H+ +LHTSASL +NE++D DVR
Sbjct:    37 WFQRKINLRPQHRGVHLVTEEILRQMPE-LAHFSVGLCHMQILHTSASLALNESWDPDVR 95

Query:   123 DDTETFLNKIVPELYFVSLLQGRSASWKHTLEGPDDMPAHIKSSMFGCTLTIPITDGQLN 182
             DD E  LNKIVPE             ++H+ EGPDDMPAH+K+   G +LTIPITDG+L+
Sbjct:    96 DDMEMMLNKIVPE----------GLPYRHSCEGPDDMPAHVKACFLGSSLTIPITDGKLS 145

Query:   183 MGTWQGIWLCEHRDAPTPRKVVITLNG 209
             +GTWQG+WLCEHRD    RK+VITL G
Sbjct:   146 LGTWQGVWLCEHRDQAGSRKLVITLTG 172

GO:0008150 "biological_process" evidence=ND

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

UNIPROTKB|Q47W13 CPS_4360 "Putative uncharacterized protein" [Colwellia psychrerythraea 34H (taxid:167879)]

 Score = 367 (134.2 bits), Expect = 9.5e-34, P = 9.5e-34
 Identities = 71/147 (48%), Positives = 100/147 (68%)

Query:    63 WAQKTVTLPPLRRGCHLITPKIVKEIAQDLSEFKCGLAHLFLLHTSASLTINENYDSDVR 122
             W Q  +TL   +RG HLIT +++K++  +L++  CG+ HLF+ H+SAS+T+NEN D  VR
Sbjct:     2 WYQTEITLKARKRGFHLITDEVLKQL-HELNKVNCGILHLFIKHSSASITLNENADPTVR 60

Query:   123 DDTETFLNKIVPELYFVSLLQGRSASWKHTLEGPDDMPAHIKSSMFGCTLTIPITDGQLN 182
              D E   N  VPE         R+  ++HT EG DDMPAHIK+S+ G +L++PI+ GQLN
Sbjct:    61 SDMEAHFNHFVPE---------RAPYYQHTYEGDDDMPAHIKASLLGNSLSLPISHGQLN 111

Query:   183 MGTWQGIWLCEHRDAPTPRKVVITLNG 209
             +G WQGI+L EHRD  + R +V T+NG
Sbjct:   112 IGIWQGIYLGEHRDHASNRTIVATING 138

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

TIGR_CMR|CPS_4360 CPS_4360 "conserved hypothetical protein TIGR00149" [Colwellia psychrerythraea 34H (taxid:167879)]

 Score = 367 (134.2 bits), Expect = 9.5e-34, P = 9.5e-34
 Identities = 71/147 (48%), Positives = 100/147 (68%)

Query:    63 WAQKTVTLPPLRRGCHLITPKIVKEIAQDLSEFKCGLAHLFLLHTSASLTINENYDSDVR 122
             W Q  +TL   +RG HLIT +++K++  +L++  CG+ HLF+ H+SAS+T+NEN D  VR
Sbjct:     2 WYQTEITLKARKRGFHLITDEVLKQL-HELNKVNCGILHLFIKHSSASITLNENADPTVR 60

Query:   123 DDTETFLNKIVPELYFVSLLQGRSASWKHTLEGPDDMPAHIKSSMFGCTLTIPITDGQLN 182
              D E   N  VPE         R+  ++HT EG DDMPAHIK+S+ G +L++PI+ GQLN
Sbjct:    61 SDMEAHFNHFVPE---------RAPYYQHTYEGDDDMPAHIKASLLGNSLSLPISHGQLN 111

Query:   183 MGTWQGIWLCEHRDAPTPRKVVITLNG 209
             +G WQGI+L EHRD  + R +V T+NG
Sbjct:   112 IGIWQGIYLGEHRDHASNRTIVATING 138

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

UNIPROTKB|Q60BB8 MCA0559 "Putative uncharacterized protein" [Methylococcus capsulatus str. Bath (taxid:243233)]

 Score = 360 (131.8 bits), Expect = 5.2e-33, P = 5.2e-33
 Identities = 73/147 (49%), Positives = 99/147 (67%)

Query:    63 WAQKTVTLPPLRRGCHLITPKIVKEIAQDLSEFKCGLAHLFLLHTSASLTINENYDSDVR 122
             W QKT+ L P  RG HL+T +I   + + L+ F+ G+AH F+ HTSASLTINEN D+DVR
Sbjct:     2 WFQKTIVLKPRSRGFHLVTAEITANLPE-LARFRQGIAHFFIQHTSASLTINENADADVR 60

Query:   123 DDTETFLNKIVPELYFVSLLQGRSASWKHTLEGPDDMPAHIKSSMFGCTLTIPITDGQLN 182
              D E +L   VPE         R+  ++HTLEG DDMPAHIK+ + G ++T+P+  G+L 
Sbjct:    61 SDLEAYLLAQVPE---------RAPYYRHTLEGDDDMPAHIKAVLVGNSVTVPLRQGRLA 111

Query:   183 MGTWQGIWLCEHRDAPTPRKVVITLNG 209
             +GTWQGI+L EHR+    R +V TL+G
Sbjct:   112 LGTWQGIYLGEHRNHGGSRSLVATLHG 138

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

UNIPROTKB|G4MUS6 MGG_01675 "Uncharacterized protein" [Magnaporthe oryzae 70-15 (taxid:242507)]

 Score = 359 (131.4 bits), Expect = 6.7e-33, P = 6.7e-33
 Identities = 76/178 (42%), Positives = 105/178 (58%)

Query:    32 ALFTKNPGSGTLKXXXXXXXXXXXXXXXXXRWAQKTVTLPPLRRGCHLITPKIVKEIAQD 91
             AL T N    T+                   W QK  TLP   RG +LIT  +VKEI + 
Sbjct:    36 ALLTGNLSRLTVSSSANRPSSYTSHPSAKMSWFQKQFTLPAKSRGSYLITDTVVKEIPE- 94

Query:    92 LSEFKCGLAHLFLLHTSASLTINENYDSDVRDDTETFLNKIVPELYFVSLLQGRSASWKH 151
             +  +K GL +LF+ HTS +L++NEN+D DVR+D    L++I P     +  +G S  + H
Sbjct:    95 IKNYKVGLLNLFVQHTSCALSLNENWDEDVREDMSNALDRIAP----AAGPKGESL-YLH 149

Query:   152 TLEGPDDMPAHIKSSMFGCTLTIPITDGQLNMGTWQGIWLCEHRDAPTPRKVVITLNG 209
             + EGPDDMPAHIKS++ G ++TIPI++G+L  GTWQGIW  E R +   RK+V T+ G
Sbjct:   150 SAEGPDDMPAHIKSALVGASVTIPISNGKLATGTWQGIWYLEFRASKHQRKIVATIQG 207

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISS

GO:0005829 "cytosol" evidence=ISS

GO:0045132 "meiotic chromosome segregation" evidence=ISS

UNIPROTKB|Q88B14 PSPTO_0219 "Uncharacterized protein" [Pseudomonas syringae pv. tomato str. DC3000 (taxid:223283)]

 Score = 341 (125.1 bits), Expect = 5.4e-31, P = 5.4e-31
 Identities = 72/147 (48%), Positives = 94/147 (63%)

Query:    63 WAQKTVTLPPLRRGCHLITPKIVKEIAQDLSEFKCGLAHLFLLHTSASLTINENYDSDVR 122
             W Q  + L    RG HL+T +IV  + Q L + + GL H++L HTSASLT+NEN D  VR
Sbjct:     2 WHQSRIALRARSRGFHLVTDEIVAGLPQ-LRDCRVGLLHVWLQHTSASLTVNENADPAVR 60

Query:   123 DDTETFLNKIVPELYFVSLLQGRSASWKHTLEGPDDMPAHIKSSMFGCTLTIPITDGQLN 182
              D E F N++VP        QG    ++H  EGPDD+PAH K+S+ GC L +P+T G+L 
Sbjct:    61 RDFERFFNRLVP--------QGVDG-YEHDDEGPDDLPAHFKASLLGCQLFLPVTAGRLA 111

Query:   183 MGTWQGIWLCEHRDAPTPRKVVITLNG 209
             +GTWQGI+L EHRDA   R V+ TL G
Sbjct:   112 LGTWQGIYLGEHRDAGGSRNVLATLQG 138

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

UNIPROTKB|Q9KUY5 VC_0373 "Putative uncharacterized protein" [Vibrio cholerae O1 biovar El Tor str. N16961 (taxid:243277)]

 Score = 339 (124.4 bits), Expect = 8.8e-31, P = 8.8e-31
 Identities = 72/147 (48%), Positives = 93/147 (63%)

Query:    63 WAQKTVTLPPLRRGCHLITPKIVKEIAQDLSEFKCGLAHLFLLHTSASLTINENYDSDVR 122
             W Q T+ L P  RG HLIT +I +++ Q +     GL HLF+ HTSASLTINEN D  VR
Sbjct:     2 WHQHTIQLRPRARGFHLITDEIEQQLPQ-IKRLNVGLLHLFVQHTSASLTINENADPTVR 60

Query:   123 DDTETFLNKIVPELYFVSLLQGRSASWKHTLEGPDDMPAHIKSSMFGCTLTIPITDGQLN 182
              D E   N   PE        G +  ++H  EG DDMPAHIKSS+ GC+++IPI  G+L 
Sbjct:    61 QDMEAHFNHAAPE--------G-APYYRHIDEGDDDMPAHIKSSLLGCSVSIPIQQGRLA 111

Query:   183 MGTWQGIWLCEHRDAPTPRKVVITLNG 209
             +GTWQGI+L EHR+    R+V+ T+ G
Sbjct:   112 LGTWQGIYLGEHRNHGGIRRVIATIQG 138

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

TIGR_CMR|VC_0373 VC_0373 "conserved hypothetical protein" [Vibrio cholerae O1 biovar El Tor (taxid:686)]

 Score = 339 (124.4 bits), Expect = 8.8e-31, P = 8.8e-31
 Identities = 72/147 (48%), Positives = 93/147 (63%)

Query:    63 WAQKTVTLPPLRRGCHLITPKIVKEIAQDLSEFKCGLAHLFLLHTSASLTINENYDSDVR 122
             W Q T+ L P  RG HLIT +I +++ Q +     GL HLF+ HTSASLTINEN D  VR
Sbjct:     2 WHQHTIQLRPRARGFHLITDEIEQQLPQ-IKRLNVGLLHLFVQHTSASLTINENADPTVR 60

Query:   123 DDTETFLNKIVPELYFVSLLQGRSASWKHTLEGPDDMPAHIKSSMFGCTLTIPITDGQLN 182
              D E   N   PE        G +  ++H  EG DDMPAHIKSS+ GC+++IPI  G+L 
Sbjct:    61 QDMEAHFNHAAPE--------G-APYYRHIDEGDDDMPAHIKSSLLGCSVSIPIQQGRLA 111

Query:   183 MGTWQGIWLCEHRDAPTPRKVVITLNG 209
             +GTWQGI+L EHR+    R+V+ T+ G
Sbjct:   112 LGTWQGIYLGEHRNHGGIRRVIATIQG 138

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

CGD|CAL0001350 orf19.3016 [Candida albicans (taxid:5476)]

 Score = 337 (123.7 bits), Expect = 1.4e-30, P = 1.4e-30
 Identities = 67/147 (45%), Positives = 97/147 (65%)

Query:    63 WAQKTVTLPPLRRGCHLITPKIVKEIAQDLSEFKCGLAHLFLLHTSASLTINENYDSDVR 122
             W Q   TL P  +GC+LIT  +++ + Q + +++ G+ +LFL HTSA+L+INEN+D DVR
Sbjct:     3 WDQTKFTLSPKSKGCYLITDDVIRSVPQ-IKDYEMGILNLFLQHTSAALSINENWDPDVR 61

Query:   123 DDTETFLNKIVPELYFVSLLQGRSASWKHTLEGPDDMPAHIKSSMFGCTLTIPITDGQLN 182
              D +  L++I PE  F          + H  EGPDD  +HIKSS  G +L+IPIT+G+L+
Sbjct:    62 TDLDKSLDRIAPEGDF----------YLHDAEGPDDSVSHIKSSTIGVSLSIPITNGKLS 111

Query:   183 MGTWQGIWLCEHRDAPTPRKVVITLNG 209
             +G WQGI+LCE R     R +V+T+NG
Sbjct:   112 LGQWQGIYLCEFRRYRHSRTIVVTING 138

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=IEA

GO:0005829 "cytosol" evidence=IEA

GO:0045132 "meiotic chromosome segregation" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	gw1.II.4176.1	SubName- Full=Putative uncharacterized protein; (163 aa)
		(Populus trichocarpa)
Predicted Functional Partners:
	gw1.2485.1.1	Predicted protein (809 aa)	•								0.545
	eugene3.111190001	hypothetical protein (398 aa)	•								0.487
	eugene3.00031274	aminoacyl-tRNA ligase (EC-6.1.1.2) (404 aa)	•								0.468
	eugene3.70940001	Predicted protein (604 aa)	•								0.447
	gw1.148.3.1	uroporphyrin-III C-methyltransferase (EC-2.1.1.107) (328 aa)	•								0.445
	fgenesh4_pg.C_scaffold_1557000001	Predicted protein (206 aa)	•						•		0.443
	eugene3.147630002	Predicted protein (106 aa)	•								0.439
	estExt_Genewise1_v1.C_LG_XVIII3287	hypothetical protein (185 aa)	•								0.434
	grail3.2618000201	Predicted protein (306 aa)	•						•		0.425
	gw1.XV.1392.1	hypothetical protein (167 aa)	•								0.404

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	210
pfam01894	118	pfam01894, UPF0047, Uncharacterized protein family	1e-58
COG0432	137	COG0432, COG0432, Uncharacterized conserved protei	1e-53
TIGR00149	132	TIGR00149, TIGR00149_YjbQ, secondary thiamine-phos	5e-40

>gnl|CDD|216769 pfam01894, UPF0047, Uncharacterized protein family UPF0047

 Score =  179 bits (458), Expect = 1e-58
 Identities = 63/131 (48%), Positives = 89/131 (67%), Gaps = 13/131 (9%)

Query: 78  HLITPKIVKEIAQDLSEFKCGLAHLFLLHTSASLTINENYDSDVRDDTETFLNKIVPELY 137
             IT ++ + + +  S  K GL H+F+ HT+ASLTINEN D DVR+D E FLN++VPE  
Sbjct: 1   IDITDEVREAVEE--SGVKNGLVHVFVPHTTASLTINENADPDVREDLERFLNRLVPE-- 56

Query: 138 FVSLLQGRSASWKHTLEGPDDMPAHIKSSMFGCTLTIPITDGQLNMGTWQGIWLCEHRDA 197
                      ++H  EGPD+MPAH+KSS+ G +LT+P+T+G+L +GTWQGI+LCE    
Sbjct: 57  --------DDPYRHNEEGPDNMPAHLKSSLLGPSLTVPVTNGRLALGTWQGIYLCEFDG- 107

Query: 198 PTPRKVVITLN 208
           P  R+VV+T+ 
Sbjct: 108 PRSRRVVVTIL 118

This family has no known function. The alignment contains a conserved aspartate and histidine that may be functionally important. Length = 118

>gnl|CDD|223509 COG0432, COG0432, Uncharacterized conserved protein [Function unknown]

 Score =  167 bits (426), Expect = 1e-53
 Identities = 59/150 (39%), Positives = 90/150 (60%), Gaps = 14/150 (9%)

Query: 61  PRWAQKTVTLPPLRR-GCHLITPKIVKEIAQDLSEFKCGLAHLFLLHTSASLTINENYDS 119
            +  QK +T+   RR     IT ++ K + +  S  K GL  +F+ HT+A+LTINE  + 
Sbjct: 1   MKVYQKELTVSTKRRIEFVDITDEVEKFVRE--SGVKNGLLLVFVPHTTAALTINEA-EP 57

Query: 120 DVRDDTETFLNKIVPELYFVSLLQGRSASWKHTLEGPDDMPAHIKSSMFGCTLTIPITDG 179
            +++D E FL K+VPE           A ++H  EGPD+ PAH+K+S+ G +LTIP+ +G
Sbjct: 58  GLKEDIERFLEKLVPE----------GAGYRHDEEGPDNAPAHLKASLLGPSLTIPVING 107

Query: 180 QLNMGTWQGIWLCEHRDAPTPRKVVITLNG 209
           +L +GTWQGI+L E       R+VV+ + G
Sbjct: 108 RLVLGTWQGIFLVEFDGPRHRRRVVVKIIG 137

Length = 137

>gnl|CDD|129253 TIGR00149, TIGR00149_YjbQ, secondary thiamine-phosphate synthase enzyme

 Score =  133 bits (336), Expect = 5e-40
 Identities = 53/145 (36%), Positives = 81/145 (55%), Gaps = 14/145 (9%)

Query: 65  QKTVTLPPLRRGCHLITPKIVKEIAQDLSEFKCGLAHLFLLHTSASLTINENYDSDVRDD 124
           Q+ +     R     IT +I   +    S  K GL  +++ HT+ASLTINEN D DV  D
Sbjct: 1   QELLLKTTKRVELIDITSEIEAVLQS--SGVKDGLLLVYVPHTTASLTINENADPDVLHD 58

Query: 125 TETFLNKIVPELYFVSLLQGRSASWKHTLEGPDDMPAHIKSSMFGCTLTIPITDGQLNMG 184
            E F  ++VP+            +++H  EG D+M AHIKSS+ G +  +P+ +G+L +G
Sbjct: 59  IERFFERLVPD----------DGNYEHD-EGDDNMDAHIKSSLLGTSQHVPVENGRLQLG 107

Query: 185 TWQGIWLCEHRDAPTPRKVVITLNG 209
           TWQGI+  E  D P  R++++ + G
Sbjct: 108 TWQGIFFAEF-DGPRTRRIIVKVQG 131

Members of this protein family have been studied extensively by crystallography. Members from several different species have been shown to have sufficient thiamin phosphate synthase activity (EC 2.5.1.3) to complement thiE mutants. However, it is presumed that this is a secondary activity, and the primary function of this enzyme remains unknown [Unknown function, Enzymes of unknown specificity]. Length = 132

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	210
COG0432	137	Uncharacterized conserved protein [Function unknow	100.0
TIGR00149	132	TIGR00149_YbjQ secondary thiamine-phosphate syntha	100.0
PF01894	118	UPF0047: Uncharacterised protein family UPF0047; I	100.0
KOG3267	138	consensus Uncharacterized conserved protein [Funct	100.0

>COG0432 Uncharacterized conserved protein [Function unknown]

Probab=100.00  E-value=2.8e-56  Score=362.08  Aligned_cols=135  Identities=44%  Similarity=0.750  Sum_probs=129.7

Q ss_pred             CeEEEEEEEecCCCC-eEEeccHHHHHHHHhhccCcccceEEEEecccceEEEEeccCCchhHHHHHHHHHHhCCCcccc
Q 028374           61 PRWAQKTVTLPPLRR-GCHLITPKIVKEIAQDLSEFKCGLAHLFLLHTSASLTINENYDSDVRDDTETFLNKIVPELYFV  139 (210)
Q Consensus        61 m~~~~~titv~T~~r-g~~dIT~eV~~~V~~~~SgI~~Glv~Vf~~HTTAsLtInEn~Dp~v~~Dl~~~L~rLvP~~~~~  139 (210)
                      |.|+|++|+|+|++| +++|||++|+++|++  |||++|+|+||++||||||+||| +||+|++||+++|++++|+    
T Consensus         1 m~~~~~~l~v~T~~r~~~vdIT~ev~~~v~e--sgv~~Gl~~vf~~HtTaal~inE-~ep~l~~Di~~~l~~lvP~----   73 (137)
T COG0432           1 MKVYQKELTVSTKRRIEFVDITDEVEKFVRE--SGVKNGLLLVFVPHTTAALTINE-AEPGLKEDIERFLEKLVPE----   73 (137)
T ss_pred             CceEEEEEEEeccCccceEEchHHHHHHHHH--cCCccceEEEEecCcceEEEEec-CCCcHHHHHHHHHHHhCCC----
Confidence            789999999999999 999999999999999  99999999999999999999999 7999999999999999999    


Q ss_pred             ccccCCCCCCCCCCCCCCCchhhhhhhccCceEEEEEeCCeeecCCcceEEEEEecCCCCC-eEEEEEEec
Q 028374          140 SLLQGRSASWKHTLEGPDDMPAHIKSSMFGCTLTIPITDGQLNMGTWQGIWLCEHRDAPTP-RKVVITLNG  209 (210)
Q Consensus       140 ~~~~~~~~~Y~H~~eG~dn~~AHIKssL~G~SltIPV~dGkL~LGtWQ~I~l~E~~dgpr~-R~V~v~v~G  209 (210)
                            +..|+|+.+|+|||+|||||+|+|+|++|||.||+|.|||||+|||+||| +||. |+|+++++|
T Consensus        74 ------~~~Y~H~~~~~Dn~~aHlkasllG~S~~iPv~~GrL~LGTWQ~I~~~E~d-g~r~~R~v~v~i~g  137 (137)
T COG0432          74 ------GAGYRHDEEGPDNAPAHLKASLLGPSLTIPVINGRLVLGTWQGIFLVEFD-GPRHRRRVVVKIIG  137 (137)
T ss_pred             ------CCCcccccCCCCchHHHHHHHhcCceEEEEEeCCeEceecccEEEEEEec-CCCCccEEEEEEcC
Confidence                  56799999999999999999999999999999999999999999999995 5555 999999987

>TIGR00149 TIGR00149_YbjQ secondary thiamine-phosphate synthase enzyme

Probab=100.00  E-value=1.8e-53  Score=343.93  Aligned_cols=130  Identities=41%  Similarity=0.736  Sum_probs=123.1

Q ss_pred             EEEecCCCC-eEEeccHHHHHHHHhhccCcccceEEEEecccceEEEEeccCCchhHHHHHHHHHHhCCCccccccccCC
Q 028374           67 TVTLPPLRR-GCHLITPKIVKEIAQDLSEFKCGLAHLFLLHTSASLTINENYDSDVRDDTETFLNKIVPELYFVSLLQGR  145 (210)
Q Consensus        67 titv~T~~r-g~~dIT~eV~~~V~~~~SgI~~Glv~Vf~~HTTAsLtInEn~Dp~v~~Dl~~~L~rLvP~~~~~~~~~~~  145 (210)
                      ++++.|.++ +++|||++|+++|++  ||+++|+|+||++||||||++|||+||+|+.||+++|+||||+          
T Consensus         2 ~~~~~t~~~~~~~dIT~~V~~~v~~--s~i~~G~~~v~~~HTTa~l~inE~~dp~l~~Dl~~~l~~lvP~----------   69 (132)
T TIGR00149         2 ELLLKTTKRVELIDITSEIEAVLQS--SGVKDGLLLVYVPHTTASLTINENADPDVLHDIERFFERLVPD----------   69 (132)
T ss_pred             EEEEEcCCCCeEEEChHHHHHHHHH--cCCcccEEEEEeCCCcEEEEEecCCCccHHHHHHHHHHHHCCC----------
Confidence            467777655 999999999999999  9999999999999999999999999999999999999999998          


Q ss_pred             CCCCCCCCCCCCCchhhhhhhccCceEEEEEeCCeeecCCcceEEEEEecCCCCCeEEEEEEecC
Q 028374          146 SASWKHTLEGPDDMPAHIKSSMFGCTLTIPITDGQLNMGTWQGIWLCEHRDAPTPRKVVITLNGI  210 (210)
Q Consensus       146 ~~~Y~H~~eG~dn~~AHIKssL~G~SltIPV~dGkL~LGtWQ~I~l~E~~dgpr~R~V~v~v~Ge  210 (210)
                      +..|+|+ +++|||+|||||+|+|+|++|||.||+|.||+||+|||||| |+||+|+|+|+++||
T Consensus        70 ~~~y~H~-~~~~n~~aHlka~L~G~s~tipi~dG~L~LGtwQ~I~l~E~-Dg~r~R~v~v~i~Ge  132 (132)
T TIGR00149        70 DGNYEHD-EGDDNMDAHIKSSLLGTSQHVPVENGRLQLGTWQGIFFAEF-DGPRTRRIIVKVQGE  132 (132)
T ss_pred             CCCcccc-CCCCCHHHHHHHHhcCccEEEEEeCCEEcccCccEEEEEEC-CCCCCcEEEEEEEeC
Confidence            4569998 88999999999999999999999999999999999999999 699999999999997

Members of this protein family have been studied extensively by crystallography. Members from several different species have been shown to have sufficient thiamin phosphate synthase activity (EC 2.5.1.3) to complement thiE mutants. However, it is presumed that this is a secondary activity, and the primary function of this enzyme remains unknown.

>PF01894 UPF0047: Uncharacterised protein family UPF0047; InterPro: IPR001602 This family contains small uncharacterised proteins of 14 to 16 kDa mainly from bacteria although the signatures also occur in a hypothetical protein from archaea and from yeast

Probab=100.00  E-value=1.5e-51  Score=327.13  Aligned_cols=118  Identities=47%  Similarity=0.834  Sum_probs=105.0

Q ss_pred             EeccHHHHHHHHhhccCcccceEEEEecccceEEEEeccCCchhHHHHHHHHHHhCCCccccccccCCCCCCCCCCCCCC
Q 028374           78 HLITPKIVKEIAQDLSEFKCGLAHLFLLHTSASLTINENYDSDVRDDTETFLNKIVPELYFVSLLQGRSASWKHTLEGPD  157 (210)
Q Consensus        78 ~dIT~eV~~~V~~~~SgI~~Glv~Vf~~HTTAsLtInEn~Dp~v~~Dl~~~L~rLvP~~~~~~~~~~~~~~Y~H~~eG~d  157 (210)
                      +|||++|+++|++  ||+++|+|+||++||||||+||||+||+|++||+++|+||||+          +..|+|+.+|++
T Consensus         1 idIT~~V~~~v~~--s~i~~Gl~~v~~~HTTaal~inE~~dp~v~~Dl~~~l~~lvP~----------~~~y~H~~~~~~   68 (118)
T PF01894_consen    1 IDITEEVREAVEE--SGIRNGLVHVFVPHTTAALTINENADPDVRRDLLEALERLVPE----------DDPYRHNEEGPD   68 (118)
T ss_dssp             EE-HHHHHHHHHH--HT-SEEEEEEEESSSSEEEEEEESSSHHHHHHHHHHHHHHS-T----------TST-GGGCTT-S
T ss_pred             CcchHHHHHHHHH--hCCcceEEEEEeCCCeEEEEEeecCChhHHHhHHHHHHHhCCC----------CCceEeCCcccc
Confidence            7999999999999  9999999999999999999999999999999999999999999          568999999999


Q ss_pred             CchhhhhhhccCceEEEEEeCCeeecCCcceEEEEEecCCCCCeEEEEEEe
Q 028374          158 DMPAHIKSSMFGCTLTIPITDGQLNMGTWQGIWLCEHRDAPTPRKVVITLN  208 (210)
Q Consensus       158 n~~AHIKssL~G~SltIPV~dGkL~LGtWQ~I~l~E~~dgpr~R~V~v~v~  208 (210)
                      ||+||+||+|+|+|++|||.||+|.||+||+|||||| ||||+|+|+|+||
T Consensus        69 n~~aHlks~l~G~S~~vpv~~G~L~LGtwQ~I~l~E~-dgpr~R~v~v~i~  118 (118)
T PF01894_consen   69 NAPAHLKSSLIGPSLTVPVHDGKLALGTWQGIYLVEF-DGPRERTVVVQIM  118 (118)
T ss_dssp             THHHHHHHHHH-SEEEEEEETTEE---TTEEEEEEES-S-SSEEEEEEEEE
T ss_pred             CccHHHHHHhcCCeEEEEEECCEEccCCcCEEEEEEC-CCCCeEEEEEEEC
Confidence            9999999999999999999999999999999999999 5699999999986

; PDB: 1VPH_E 2P6C_A 2CU5_A 1VMJ_A 1XBF_B 1VMH_A 1VE0_A 2P6H_B 1VMF_C.

>KOG3267 consensus Uncharacterized conserved protein [Function unknown]

Probab=100.00  E-value=2e-47  Score=302.79  Aligned_cols=138  Identities=66%  Similarity=1.141  Sum_probs=133.3

Q ss_pred             EEEEEecCCCCeEEeccHHHHHHHHhhccCcccceEEEEecccceEEEEeccCCchhHHHHHHHHHHhCCCccccccccC
Q 028374           65 QKTVTLPPLRRGCHLITPKIVKEIAQDLSEFKCGLAHLFLLHTSASLTINENYDSDVRDDTETFLNKIVPELYFVSLLQG  144 (210)
Q Consensus        65 ~~titv~T~~rg~~dIT~eV~~~V~~~~SgI~~Glv~Vf~~HTTAsLtInEn~Dp~v~~Dl~~~L~rLvP~~~~~~~~~~  144 (210)
                      |++|++...++|||.||+++.+.++++++....|++|+|.+||+|+|+||||+||+++.|++.+|+|+||+        +
T Consensus         1 qk~itl~~~~kg~~iit~~ilkeir~dl~~fn~g~~~~fiqhtsaaltinen~d~d~qad~~~~ldkivpe--------~   72 (138)
T KOG3267|consen    1 QKIITLDPLRKGCHIITNDILKEIREDLKDFNCGLAHFFIQHTSAALTINENWDADTQADMEDFLDKIVPE--------G   72 (138)
T ss_pred             CceEecCcccCccEEecHHHHHHHHHHHhhccccceeeeeeccceeeEecccCCcchhhhHHHHHHhhCcC--------C
Confidence            57899999899999999999999988889999999999999999999999999999999999999999999        5


Q ss_pred             CCCCCCCCCCCCCCchhhhhhhccCceEEEEEeCCeeecCCcceEEEEEecCCCCCeEEEEEEecC
Q 028374          145 RSASWKHTLEGPDDMPAHIKSSMFGCTLTIPITDGQLNMGTWQGIWLCEHRDAPTPRKVVITLNGI  210 (210)
Q Consensus       145 ~~~~Y~H~~eG~dn~~AHIKssL~G~SltIPV~dGkL~LGtWQ~I~l~E~~dgpr~R~V~v~v~Ge  210 (210)
                      +..+|+|..||+||||||+||+|+|+++||||.+|||.|||||+|+|+|||+.|+.|+|+++++|.
T Consensus        73 nsa~~rht~eg~ddmpahikssl~g~qltipit~gklslgtwq~i~l~e~r~~p~ar~iv~ti~gi  138 (138)
T KOG3267|consen   73 NSAGWRHTAEGLDDMPAHIKSSLFGCQLTIPITKGKLSLGTWQDIQLAEFRDAPHARRIVCTIIGI  138 (138)
T ss_pred             CCccccccccCcccchhhhhhccccceEEEEeccCeecccccccchhhhhhcCCcccEEEEEEecC
Confidence            568999999999999999999999999999999999999999999999999999999999999984

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	210
1vmh_A	144	Crystal Structure Of An Uncharacterized Conserved P		5e-15
1xbf_A	140	X-Ray Structure Northeast Structural Genomics Conso		2e-14
1vmf_A	145	Crystal Structure Of A Ybjq-Like Fold Protein Of Un		2e-12
2p6c_A	137	Crystal Structure Of Hypothetical Protein Aq_2013 F		9e-10
1vmj_A	151	Crystal Structure Of A Putative Thiamin Phosphate S		3e-09
1ve0_A	134	Crystal Structure Of Uncharacterized Protein St2072		7e-09
1vph_A	149	Crystal Structure Of A Ybjq-Like Protein Of Unknown		2e-07
2p6h_A	134	Crystal Structure Of Hypothetical Protein Ape1520 F		2e-06
2cu5_A	129	Crystal Structure Of The Conserved Hypothetical Pro		9e-06

>pdb|1VMH|A Chain A, Crystal Structure Of An Uncharacterized Conserved Protein YjbqUPF0047 Family, Ortholog Yugu B.Subtilis (Ca_c0907) From Clostridium Acetobutylicum At 1.31 A Resolution Length = 144

Iteration: 1
 Score = 77.4 bits (189), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 47/119 (39%), Positives = 67/119 (56%), Gaps = 14/119 (11%)
Query: 89  AQDLSEFKCGLAHLFLLHTSASLTINENYDSDVRDDTETFLNKIVPELYFVSLLQGRSAS 148
           A D S    G+A +F  HT+A +TINEN D DV  D    L+K+ P++            
Sbjct: 39  AVDESGVSDGMAVVFCPHTTAGITINENADPDVTRDILVNLDKVFPKV----------GD 88
Query: 149 WKHTLEGPDDMPAHIKSSMFGCTLTIPITDGQLNMGTWQGIWLCEHRDAPTPRKVVITL 207
           +KH +EG  +  AHIK+S+ G +  I I +G+L +GTWQGI+  E  D P  RKV + +
Sbjct: 89  YKH-VEG--NSHAHIKASLMGSSQQIIIENGKLKLGTWQGIYFTEF-DGPRDRKVFVKI 143

>pdb|1XBF|A Chain A, X-Ray Structure Northeast Structural Genomics Consortium Target Car10 From C. Acetobutylicum Length = 140

Iteration: 1
 Score = 75.1 bits (183), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 47/119 (39%), Positives = 66/119 (55%), Gaps = 14/119 (11%)
Query: 89  AQDLSEFKCGLAHLFLLHTSASLTINENYDSDVRDDTETFLNKIVPELYFVSLLQGRSAS 148
           A D S    G A +F  HT+A +TINEN D DV  D    L+K+ P++            
Sbjct: 27  AVDESGVSDGXAVVFCPHTTAGITINENADPDVTRDILVNLDKVFPKV----------GD 76
Query: 149 WKHTLEGPDDMPAHIKSSMFGCTLTIPITDGQLNMGTWQGIWLCEHRDAPTPRKVVITL 207
           +KH +EG  +  AHIK+S+ G +  I I +G+L +GTWQGI+  E  D P  RKV + +
Sbjct: 77  YKH-VEG--NSHAHIKASLXGSSQQIIIENGKLKLGTWQGIYFTEF-DGPRDRKVFVKI 131

>pdb|1VMF|A Chain A, Crystal Structure Of A Ybjq-Like Fold Protein Of Unknown Function (Bh3498) From Bacillus Halodurans At 1.46 A Resolution Length = 145

Iteration: 1
 Score = 69.3 bits (168), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 41/114 (35%), Positives = 62/114 (54%), Gaps = 20/114 (17%)
Query: 98  GLAHLFLLHTSASLTINENYDSDVRDDTETFLNKIVPELYFVSLLQGRSASWKHT----L 153
           G+A +  LHT+A +T+NEN D DV+ D    L+++ P              W H     +
Sbjct: 45  GVAIVSSLHTTAGITVNENADPDVKRDMIMRLDEVYP--------------WHHENDRHM 90
Query: 154 EGPDDMPAHIKSSMFGCTLTIPITDGQLNMGTWQGIWLCEHRDAPTPRKVVITL 207
           EG  +  AH+K+S  G   T+ I++G+L +GTWQG++ CE     T RK V+ L
Sbjct: 91  EG--NTAAHLKTSTVGHAQTLIISEGRLVLGTWQGVYFCEFDGPRTNRKFVVKL 142

>pdb|2P6C|A Chain A, Crystal Structure Of Hypothetical Protein Aq_2013 From Aquifex Aeolicus Vf5. Length = 137

Iteration: 1
 Score = 60.1 bits (144), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 40/136 (29%), Positives = 71/136 (52%), Gaps = 14/136 (10%)
Query: 74  RRGCHLITPKIVKEIAQDLSEFKCGLAHLFLLHTSASLTINENYDSDVRDDTETFLNKIV 133
           RR    IT ++ K + +  SE K GL  +  +H ++S+ I ++ +  + +D   +L K+ 
Sbjct: 15  RRELIRITDEVKKAVEE--SEVKEGLCLVSSMHLTSSVIIQDD-EEGLHEDIWEWLEKLA 71
Query: 134 PELYFVSLLQGRSASWKHTLEGPDDMPAHIKSSMFGCTLTIPITDGQLNMGTWQGIWLCE 193
           P              +KH   G D+  AH+K+ +    + +PIT+G+L++G WQ I+  E
Sbjct: 72  P----------YRPDYKHHRTGEDNGDAHLKNLLTHLQVVLPITNGKLDLGPWQEIFYAE 121
Query: 194 HRDAPTPRKVVITLNG 209
             D   P++VVI + G
Sbjct: 122 F-DGQRPKRVVIKIIG 136

>pdb|1VMJ|A Chain A, Crystal Structure Of A Putative Thiamin Phosphate Synthase (Tm0723) From Thermotoga Maritima Msb8 At 1.52 A Resolution Length = 151

Iteration: 1
 Score = 58.2 bits (139), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 40/136 (29%), Positives = 74/136 (54%), Gaps = 12/136 (8%)
Query: 74  RRGCHLITPKIVKEIAQDLSEFKCGLAHLFLLHTSASLTINENYDSDVRDDTETFLNKIV 133
           RR    ITP +++E  ++ S  K GL     +H +AS+ IN++ +  +  D E +L K+ 
Sbjct: 27  RREFINITP-LLEECVRE-SGIKEGLLLCNAMHITASVFINDD-EPGLHHDFEVWLEKLA 83
Query: 134 PELYFVSLLQGRSASWKHTLEGPDDMPAHIKSSMFGCTLTIPITDGQLNMGTWQGIWLCE 193
           PE  +        + +KH   G D+  AH+K ++ G  + I ITD ++++G W+ ++  E
Sbjct: 84  PEKPY--------SQYKHNDTGEDNADAHLKRTIMGREVVIAITDRKMDLGPWEQVFYGE 135
Query: 194 HRDAPTPRKVVITLNG 209
             D   P++V++ + G
Sbjct: 136 F-DGMRPKRVLVKIIG 150

>pdb|1VE0|A Chain A, Crystal Structure Of Uncharacterized Protein St2072 From Sulfolobus Tokodaii Length = 134

Iteration: 1
 Score = 57.0 bits (136), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 35/126 (27%), Positives = 67/126 (53%), Gaps = 13/126 (10%)
Query: 84  IVKEIAQDLSEFKCGLAHLFLLHTSASLTINENYDSDVRDDTETFLNKIVPELYFVSLLQ 143
           I +++++ +     G+AH+ + HT+ ++ INE  +S +  D   +  K+VP         
Sbjct: 21  ITEQVSEAIKGINNGIAHVIVKHTTCAIIINE-AESGLXKDFLNWAKKLVPP-------- 71
Query: 144 GRSASWKHTLEGPDDMPAHIKSSMFGCTLTIPITDGQLNMGTWQGIWLCEHRDAPTPRKV 203
                ++H +   ++  AH+ S++ G +  +PI +G+L++GTWQ I L E  D P  R V
Sbjct: 72  --DGEFEHNII-DNNGHAHVISAIIGNSRVVPIIEGKLDLGTWQRIILLEF-DGPRTRTV 127
Query: 204 VITLNG 209
           ++   G
Sbjct: 128 LVKSXG 133

>pdb|1VPH|A Chain A, Crystal Structure Of A Ybjq-Like Protein Of Unknown Function (Sso2532) From Sulfolobus Solfataricus P2 At 1.76 A Resolution Length = 149

Iteration: 1
 Score = 52.8 bits (125), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 35/117 (29%), Positives = 55/117 (47%), Gaps = 12/117 (10%)
Query: 93  SEFKCGLAHLFLLHTSASLTINENYDSDVRDDTETFLNKIVPELYFVSLLQGRSASWKHT 152
           S  K G+  +F+ H++A++  NE+     R   E  L KI             S SWKH 
Sbjct: 44  SGIKNGICLIFVAHSTAAIVANEHE----RGLMEDILTKIKE-------FTEPSRSWKHN 92
Query: 153 LEGPDDMPAHIKSSMFGCTLTIPITDGQLNMGTWQGIWLCEHRDAPTPRKVVITLNG 209
           L   D+  AH+ ++  G     P+ +G+L  GTWQ I+L E     + R + + + G
Sbjct: 93  L-IDDNAHAHLGATFLGAERVFPVREGKLVRGTWQNIFLVELDGPRSERHITVEILG 148

>pdb|2P6H|A Chain A, Crystal Structure Of Hypothetical Protein Ape1520 From Aeropyrum Pernix K1 Length = 134

Iteration: 1
 Score = 49.3 bits (116), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 32/106 (30%), Positives = 51/106 (48%), Gaps = 13/106 (12%)
Query: 98  GLAHLFLLHTSASLTINENYDSDVRDDTETFLNKIVPELYFVSLLQGRSASWKHTLEGPD 157
           GL  +++ HT+A++ +NE     + D  E           F+  L      WKH L   +
Sbjct: 35  GLLVVYVPHTTAAVAVNEAEPRLMEDIVE-----------FIRELTKPGGPWKHNLVDVN 83
Query: 158 DMPAHIKSSMFGCTLTIPITDGQLNMGTWQGIWLCEHRDAPTPRKV 203
              AH+ +++ G +  IP+  G+L++GTWQ I   E  D P  R V
Sbjct: 84  -AHAHLGNTIIGDSRVIPVVGGRLSLGTWQRILFVEM-DGPRERTV 127

>pdb|2CU5|A Chain A, Crystal Structure Of The Conserved Hypothetical Protein Tt1486 From Thermus Thermophilus Hb8 Length = 129

Iteration: 1
 Score = 46.6 bits (109), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 39/124 (31%), Positives = 58/124 (46%), Gaps = 14/124 (11%)
Query: 84  IVKEIAQDLSEFKCGLAHLFLLHTSASLTINENYDSDVRDDTETFLNKIVPELYFVSLLQ 143
           I +++   LS    GL +LF+ HT+  LT+ E  D  V  D    L ++ P         
Sbjct: 19  ITRKVEAALSG-HTGLVYLFVPHTTCGLTVQEGADPTVAQDLLGRLAELAP--------- 68
Query: 144 GRSASWKHTLEGPDDMPAHIKSSMFGCTLTIPITDGQLNMGTWQGIWLCEHRDAPTPRKV 203
            R       LEG  +  AH+KS + G  L +    G+L +G WQ ++L E  D P  R+V
Sbjct: 69  -RHRPQDRHLEG--NSHAHLKSLLTGVHLLLLAEKGRLRLGRWQQVFLAEF-DGPRVREV 124
Query: 204 VITL 207
            + L
Sbjct: 125 WVRL 128

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	210
1vmf_A	145	Hypothetical protein; structural genomics, joint c	6e-40
2p6c_A	137	AQ_2013 protein; NPPSFA, national project on prote	9e-39
1vmj_A	151	Hypothetical protein TM0723; putative thiamin phos	2e-38
2cu5_A	129	Conserved hypothetical protein TT1486; thermus the	5e-36
1ve0_A	134	Hypothetical protein (ST2072); structural genomics	2e-35
1vmh_A	144	Uncharacterized conserved protein YJBQ/UPF0047 FA	3e-35
1vph_A	149	Hypothetical protein SSO2532; YBJQ-like fold, stru	4e-34
2p6h_A	134	Hypothetical protein; structural genomics, unknown	7e-33

>1vmf_A Hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI, unknown function; HET: EPE; 1.46A {Bacillus halodurans} SCOP: d.273.1.1 Length = 145

 Score =  132 bits (334), Expect = 6e-40
 Identities = 45/151 (29%), Positives = 71/151 (47%), Gaps = 15/151 (9%)

Query: 60  NPRWAQKTVTLPPLRRGC-HLITPKIVKEIAQDLSEFKCGLAHLFLLHTSASLTINENYD 118
           +     KT  L    R     IT +I   I +  +    G+A +  LHT+A +T+NEN D
Sbjct: 8   HHHHHMKTFHLTTQSRDEMVDITSQIETWIRE--TGVTNGVAIVSSLHTTAGITVNENAD 65

Query: 119 SDVRDDTETFLNKIVPELYFVSLLQGRSASWKHTLEGPDDMPAHIKSSMFGCTLTIPITD 178
            DV+ D    L+++ P               ++      +  AH+K+S  G   T+ I++
Sbjct: 66  PDVKRDMIMRLDEVYPW------------HHENDRHMEGNTAAHLKTSTVGHAQTLIISE 113

Query: 179 GQLNMGTWQGIWLCEHRDAPTPRKVVITLNG 209
           G+L +GTWQG++ CE     T RK V+ L  
Sbjct: 114 GRLVLGTWQGVYFCEFDGPRTNRKFVVKLLT 144

>2p6c_A AQ_2013 protein; NPPSFA, national project on protein structural and functiona analyses, riken structural genomics/proteomics initiative; 2.00A {Aquifex aeolicus} Length = 137

 Score =  129 bits (325), Expect = 9e-39
 Identities = 42/149 (28%), Positives = 75/149 (50%), Gaps = 15/149 (10%)

Query: 62  RWAQKTVTLP-PLRRGCHLITPKIVKEIAQDLSEFKCGLAHLFLLHTSASLTINENYDSD 120
           +   K +T     RR    IT ++ K + +  SE K GL  +  +H ++S+ I ++ +  
Sbjct: 2   KAYTKYLTFNTKKRRELIRITDEVKKAVEE--SEVKEGLCLVSSMHLTSSVIIQDDEE-G 58

Query: 121 VRDDTETFLNKIVPELYFVSLLQGRSASWKHTLEGPDDMPAHIKSSMFGCTLTIPITDGQ 180
           + +D   +L K+ P              +KH   G D+  AH+K+ +    + +PIT+G+
Sbjct: 59  LHEDIWEWLEKLAPY----------RPDYKHHRTGEDNGDAHLKNLLTHLQVVLPITNGK 108

Query: 181 LNMGTWQGIWLCEHRDAPTPRKVVITLNG 209
           L++G WQ I+  E  D   P++VVI + G
Sbjct: 109 LDLGPWQEIFYAEF-DGQRPKRVVIKIIG 136

>1vmj_A Hypothetical protein TM0723; putative thiamin phosphate synthase, structural genomics, JO center for structural genomics, JCSG; 1.52A {Thermotoga maritima} SCOP: d.273.1.1 Length = 151

 Score =  129 bits (324), Expect = 2e-38
 Identities = 41/160 (25%), Positives = 78/160 (48%), Gaps = 17/160 (10%)

Query: 51  NPNPNPMASNPRWAQKTVTLP-PLRRGCHLITPKIVKEIAQDLSEFKCGLAHLFLLHTSA 109
           + + + M    +  +K +      RR    ITP + + + +  S  K GL     +H +A
Sbjct: 7   HHHHHHM----KSYRKELWFHTKRRREFINITPLLEECVRE--SGIKEGLLLCNAMHITA 60

Query: 110 SLTINENYDSDVRDDTETFLNKIVPELYFVSLLQGRSASWKHTLEGPDDMPAHIKSSMFG 169
           S+ IN+  +  +  D E +L K+ PE           + +KH   G D+  AH+K ++ G
Sbjct: 61  SVFIND-DEPGLHHDFEVWLEKLAPE--------KPYSQYKHNDTGEDNADAHLKRTIMG 111

Query: 170 CTLTIPITDGQLNMGTWQGIWLCEHRDAPTPRKVVITLNG 209
             + I ITD ++++G W+ ++  E  D   P++V++ + G
Sbjct: 112 REVVIAITDRKMDLGPWEQVFYGEF-DGMRPKRVLVKIIG 150

>2cu5_A Conserved hypothetical protein TT1486; thermus thermophilus HB8, ST genomics, riken structural genomics/proteomics initiative; 1.84A {Thermus thermophilus} Length = 129

 Score =  122 bits (307), Expect = 5e-36
 Identities = 37/145 (25%), Positives = 58/145 (40%), Gaps = 18/145 (12%)

Query: 63  WAQKTVTLPPLRRGCHLITPKIVKEIAQDLSEFKCGLAHLFLLHTSASLTINENYDSDVR 122
                + +P    G   IT K+   ++        GL +LF+ HT+  LT+ E  D  V 
Sbjct: 2   EGVVRLEVPTPEEGFVNITRKVEAALSG-----HTGLVYLFVPHTTCGLTVQEGADPTVA 56

Query: 123 DDTETFLNKIVPELYFVSLLQGRSASWKHTLEGPDDMPAHIKSSMFGCTLTIPITDGQLN 182
            D    L ++ P                       +  AH+KS + G  L +    G+L 
Sbjct: 57  QDLLGRLAELAPR------------HRPQDRHLEGNSHAHLKSLLTGVHLLLLAEKGRLR 104

Query: 183 MGTWQGIWLCEHRDAPTPRKVVITL 207
           +G WQ ++L E  D P  R+V + L
Sbjct: 105 LGRWQQVFLAEF-DGPRVREVWVRL 128

>1ve0_A Hypothetical protein (ST2072); structural genomics, zinc binding protein, metal binding Pro; 2.00A {Sulfolobus tokodaii} Length = 134

 Score =  120 bits (303), Expect = 2e-35
 Identities = 36/149 (24%), Positives = 70/149 (46%), Gaps = 18/149 (12%)

Query: 62  RWAQKTVTLPPLRRGCHL-ITPKIVKEIAQDLSEFKCGLAHLFLLHTSASLTINENYDSD 120
           +   K  T+    R   + IT     ++++ +     G+AH+ + HT+ ++ INE     
Sbjct: 2   KIISKEFTVKTRSRFDSIDITE----QVSEAIKGINNGIAHVIVKHTTCAIIINEAESGL 57

Query: 121 VRDDTETFLNKIVPELYFVSLLQGRSASWKHTLEGPDDMPAHIKSSMFGCTLTIPITDGQ 180
           ++D        + P+             ++H +   ++  AH+ S++ G +  +PI +G+
Sbjct: 58  MKDFLNWAKKLVPPD-----------GEFEHNII-DNNGHAHVISAIIGNSRVVPIIEGK 105

Query: 181 LNMGTWQGIWLCEHRDAPTPRKVVITLNG 209
           L++GTWQ I L E  D P  R V++   G
Sbjct: 106 LDLGTWQRIILLEF-DGPRTRTVLVKSMG 133

>1vmh_A Uncharacterized conserved protein YJBQ/UPF0047 FA ortholog YUGU B.subtilis; YJBQ-like fold, structural genomics; 1.31A {Clostridium acetobutylicum} SCOP: d.273.1.1 PDB: 1xbf_A Length = 144

 Score =  120 bits (303), Expect = 3e-35
 Identities = 44/134 (32%), Positives = 64/134 (47%), Gaps = 16/134 (11%)

Query: 74  RRGCHLITPKIVKEIAQDLSEFKCGLAHLFLLHTSASLTINENYDSDVRDDTETFLNKIV 133
                 IT  + K + +  S    G+A +F  HT+A +TINEN D DV  D    L+K+ 
Sbjct: 26  DDQFIDITNLVKKAVDE--SGVSDGMAVVFCPHTTAGITINENADPDVTRDILVNLDKVF 83

Query: 134 PELYFVSLLQGRSASWKHTLEGPDDMPAHIKSSMFGCTLTIPITDGQLNMGTWQGIWLCE 193
           P+                      +  AHIK+S+ G +  I I +G+L +GTWQGI+  E
Sbjct: 84  PK-------------VGDYKHVEGNSHAHIKASLMGSSQQIIIENGKLKLGTWQGIYFTE 130

Query: 194 HRDAPTPRKVVITL 207
             D P  RKV + +
Sbjct: 131 F-DGPRDRKVFVKI 143

>1vph_A Hypothetical protein SSO2532; YBJQ-like fold, structural genomics, joint center for struct genomics, JCSG, protein structure initiative; 1.76A {Sulfolobus solfataricus} SCOP: d.273.1.1 Length = 149

 Score =  118 bits (296), Expect = 4e-34
 Identities = 32/149 (21%), Positives = 62/149 (41%), Gaps = 15/149 (10%)

Query: 62  RWAQKTVTLP-PLRRGCHLITPKIVKEIAQDLSEFKCGLAHLFLLHTSASLTINENYDSD 120
           +     + +    +     IT ++ + + +  S  K G+  +F+ H++A++  NE+    
Sbjct: 14  KVYFDDIYVSTARQFELVDITDQVEQIVEK--SGIKNGICLIFVAHSTAAIVANEHERGL 71

Query: 121 VRDDTETFLNKIVPELYFVSLLQGRSASWKHTLEGPDDMPAHIKSSMFGCTLTIPITDGQ 180
           + D          P              WKH L   D+  AH+ ++  G     P+ +G+
Sbjct: 72  MEDILTKIKEFTEPSRS-----------WKHNLI-DDNAHAHLGATFLGAERVFPVREGK 119

Query: 181 LNMGTWQGIWLCEHRDAPTPRKVVITLNG 209
           L  GTWQ I+L E     + R + + + G
Sbjct: 120 LVRGTWQNIFLVELDGPRSERHITVEILG 148

>2p6h_A Hypothetical protein; structural genomics, unknown function, NPPSFA, national PROJ protein structural and functional analyses; 1.95A {Aeropyrum pernix} Length = 134

 Score =  114 bits (286), Expect = 7e-33
 Identities = 31/146 (21%), Positives = 62/146 (42%), Gaps = 16/146 (10%)

Query: 65  QKTVTLP-PLRRGCHLITPKIVKEIAQDLSEFKCGLAHLFLLHTSASLTINENYDSDVRD 123
             + T+    R     +T K+ + ++        GL  +++ HT+A++ +NE  +  + +
Sbjct: 3   TGSFTVKTERRLQVLDVTGKVEEWLST--VGGVNGLLVVYVPHTTAAVAVNE-AEPRLME 59

Query: 124 DTETFLNKIVPELYFVSLLQGRSASWKHTLEGPDDMPAHIKSSMFGCTLTIPITDGQLNM 183
           D   F+ ++                         +  AH+ +++ G +  IP+  G+L++
Sbjct: 60  DIVEFIRELTKPGGP-----------WKHNLVDVNAHAHLGNTIIGDSRVIPVVGGRLSL 108

Query: 184 GTWQGIWLCEHRDAPTPRKVVITLNG 209
           GTWQ I   E  D P  R V +   G
Sbjct: 109 GTWQRILFVEM-DGPRERTVNLLYLG 133

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	210
2p6c_A	137	AQ_2013 protein; NPPSFA, national project on prote	100.0
1vmj_A	151	Hypothetical protein TM0723; putative thiamin phos	100.0
2p6h_A	134	Hypothetical protein; structural genomics, unknown	100.0
1ve0_A	134	Hypothetical protein (ST2072); structural genomics	100.0
1vph_A	149	Hypothetical protein SSO2532; YBJQ-like fold, stru	100.0
1vmf_A	145	Hypothetical protein; structural genomics, joint c	100.0
1vmh_A	144	Uncharacterized conserved protein YJBQ/UPF0047 FA	100.0
2cu5_A	129	Conserved hypothetical protein TT1486; thermus the	100.0

>2p6c_A AQ_2013 protein; NPPSFA, national project on protein structural and functiona analyses, riken structural genomics/proteomics initiative; 2.00A {Aquifex aeolicus}

Probab=100.00  E-value=3.6e-58  Score=372.05  Aligned_cols=136  Identities=29%  Similarity=0.515  Sum_probs=131.5

Q ss_pred             CeEEEEEEEecCCC-CeEEeccHHHHHHHHhhccCcccceEEEEecccceEEEEeccCCchhHHHHHHHHHHhCCCcccc
Q 028374           61 PRWAQKTVTLPPLR-RGCHLITPKIVKEIAQDLSEFKCGLAHLFLLHTSASLTINENYDSDVRDDTETFLNKIVPELYFV  139 (210)
Q Consensus        61 m~~~~~titv~T~~-rg~~dIT~eV~~~V~~~~SgI~~Glv~Vf~~HTTAsLtInEn~Dp~v~~Dl~~~L~rLvP~~~~~  139 (210)
                      |+++|++|+|+|++ ++++|||++|+++|++  ||+++|+|+||++||||||+|||| ||+|+.||+++|+||||+    
T Consensus         1 M~~~~~~i~~~t~~~~~~~dIT~~V~~~v~~--sgi~~Gl~~vf~~HTTasl~inEn-dp~v~~Dl~~~l~~lvP~----   73 (137)
T 2p6c_A            1 MKAYTKYLTFNTKKRRELIRITDEVKKAVEE--SEVKEGLCLVSSMHLTSSVIIQDD-EEGLHEDIWEWLEKLAPY----   73 (137)
T ss_dssp             CEEEEEEEEECCSSSSEEEECHHHHHHHHHH--HTCSSEEEEEEESSTTEEEEEECC-CHHHHHHHHHHHHHHSCC----
T ss_pred             CcEEEEEEEEecCCCCeEEECHHHHHHHHHH--cCCCceEEEEEeCCCeEEEEEEcC-CccHHHHHHHHHHHHCCC----
Confidence            88999999999986 5999999999999998  999999999999999999999999 999999999999999998    


Q ss_pred             ccccCCCCCCCCCCCCCCCchhhhhhhccCceEEEEEeCCeeecCCcceEEEEEecCCCCCeEEEEEEecC
Q 028374          140 SLLQGRSASWKHTLEGPDDMPAHIKSSMFGCTLTIPITDGQLNMGTWQGIWLCEHRDAPTPRKVVITLNGI  210 (210)
Q Consensus       140 ~~~~~~~~~Y~H~~eG~dn~~AHIKssL~G~SltIPV~dGkL~LGtWQ~I~l~E~~dgpr~R~V~v~v~Ge  210 (210)
                            +..|+|++||+|||+|||||+|+|+|++|||.||+|.|||||+||||||| |||+|+|+|+++||
T Consensus        74 ------~~~y~H~~eg~dn~~AHiks~l~G~s~tipv~~G~L~LGtWQ~Iyl~E~d-g~r~R~v~v~i~Ge  137 (137)
T 2p6c_A           74 ------RPDYKHHRTGEDNGDAHLKNLLTHLQVVLPITNGKLDLGPWQEIFYAEFD-GQRPKRVVIKIIGE  137 (137)
T ss_dssp             ------CTTCGGGGGTCCCHHHHHHHHHHCSEEEEEECSSSBCCCSSCEEEEEESS-CSSCEEEEEEEEEC
T ss_pred             ------CCCcccCcCCCCCHHHhhhhheeCCeEEEEEECCEECcCCCceEEEEECC-CCCccEEEEEEecC
Confidence                  45799999999999999999999999999999999999999999999995 89999999999997

>1vmj_A Hypothetical protein TM0723; putative thiamin phosphate synthase, structural genomics, JO center for structural genomics, JCSG; 1.52A {Thermotoga maritima} SCOP: d.273.1.1

Probab=100.00  E-value=2.2e-56  Score=367.07  Aligned_cols=138  Identities=29%  Similarity=0.517  Sum_probs=131.4

Q ss_pred             CCCeEEEEEEEecCC-CCeEEeccHHHHHHHHhhccCcccceEEEEecccceEEEEeccCCchhHHHHHHHHHHhCCCcc
Q 028374           59 SNPRWAQKTVTLPPL-RRGCHLITPKIVKEIAQDLSEFKCGLAHLFLLHTSASLTINENYDSDVRDDTETFLNKIVPELY  137 (210)
Q Consensus        59 ~~m~~~~~titv~T~-~rg~~dIT~eV~~~V~~~~SgI~~Glv~Vf~~HTTAsLtInEn~Dp~v~~Dl~~~L~rLvP~~~  137 (210)
                      -.|+-|+++|+|+|. +++|+|||++|+++|++  ||+++|+|+||++||||||+|||| ||+|+.||+++|+||||+  
T Consensus        11 ~~~~~~~~~l~v~T~~~~~~~dIT~~V~~~v~~--sgi~~Gl~~vf~~HTTAsltInEn-dp~v~~Dl~~~l~rlvP~--   85 (151)
T 1vmj_A           11 HHMKSYRKELWFHTKRRREFINITPLLEECVRE--SGIKEGLLLCNAMHITASVFINDD-EPGLHHDFEVWLEKLAPE--   85 (151)
T ss_dssp             --CEEEEEEEEECCSSSSEEEECHHHHHHHHHH--HCCSSEEEEEEESSTTEEEEEECC-CHHHHHHHHHHHHHHSCC--
T ss_pred             hhhhceEEEEEEECCCCCeEEEChHHHHHHHHH--cCCcccEEEEEeCCCcEEEEEEcC-CccHHHHHHHHHHHhCCC--
Confidence            359999999999996 56999999999999998  999999999999999999999999 999999999999999998  


Q ss_pred             ccccccCCCC--CCCCCCCCCCCchhhhhhhccCceEEEEEeCCeeecCCcceEEEEEecCCCCCeEEEEEEecC
Q 028374          138 FVSLLQGRSA--SWKHTLEGPDDMPAHIKSSMFGCTLTIPITDGQLNMGTWQGIWLCEHRDAPTPRKVVITLNGI  210 (210)
Q Consensus       138 ~~~~~~~~~~--~Y~H~~eG~dn~~AHIKssL~G~SltIPV~dGkL~LGtWQ~I~l~E~~dgpr~R~V~v~v~Ge  210 (210)
                              +.  .|+|+.||+|||+|||||+|+|+|++|||.||+|.|||||+|||||| ||||+|+|+|+++||
T Consensus        86 --------~~~~~y~H~~eg~dn~~AHiKssL~G~S~tiPV~~GrL~LGtWQgIyl~E~-dg~r~R~V~v~i~Ge  151 (151)
T 1vmj_A           86 --------KPYSQYKHNDTGEDNADAHLKRTIMGREVVIAITDRKMDLGPWEQVFYGEF-DGMRPKRVLVKIIGE  151 (151)
T ss_dssp             --------CCGGGCGGGTTSCCCHHHHHHHHHHCSEEEEEEETTEECCCTTCEEEEEES-SCSSCEEEEEEEEEC
T ss_pred             --------CCCCCcEecCcCCCchHhhhhhhhcCCeEEEEEECCEECcCCCcEEEEEEC-CCCCeeEEEEEEecC
Confidence                    34  69999999999999999999999999999999999999999999999 699999999999997

>2p6h_A Hypothetical protein; structural genomics, unknown function, NPPSFA, national PROJ protein structural and functional analyses; 1.95A {Aeropyrum pernix}

Probab=100.00  E-value=2.4e-56  Score=360.24  Aligned_cols=133  Identities=27%  Similarity=0.474  Sum_probs=128.0

Q ss_pred             EEEEEEEecCCCC-eEEeccHHHHHHHHhhccCcccceEEEEecccceEEEEeccCCchhHHHHHHHHHHhCCCcccccc
Q 028374           63 WAQKTVTLPPLRR-GCHLITPKIVKEIAQDLSEFKCGLAHLFLLHTSASLTINENYDSDVRDDTETFLNKIVPELYFVSL  141 (210)
Q Consensus        63 ~~~~titv~T~~r-g~~dIT~eV~~~V~~~~SgI~~Glv~Vf~~HTTAsLtInEn~Dp~v~~Dl~~~L~rLvP~~~~~~~  141 (210)
                      ++|++|+|+|++| +++|||++|+++|++  ||+++|+|+||++||||||+|||| ||+|+.||+++|+||||+      
T Consensus         1 ~~~~~i~~~t~~r~~~~dIT~~V~~~v~~--sgi~~Gl~~vf~~HTTasltinEn-dp~v~~Dl~~~l~~lvP~------   71 (134)
T 2p6h_A            1 METGSFTVKTERRLQVLDVTGKVEEWLST--VGGVNGLLVVYVPHTTAAVAVNEA-EPRLMEDIVEFIRELTKP------   71 (134)
T ss_dssp             CEEEEEEEECCSSSEEEECHHHHHHHHHT--TTCCSEEEEEECCCSSEEEEEECC-CHHHHHHHHHHHHHHHCT------
T ss_pred             CeEEEEEEecCCCCeEEECHHHHHHHHHH--cCCCceEEEEEeCCCeEEEEEEcC-CccHHHHHHHHHHHhCCC------
Confidence            3789999999876 999999999999998  999999999999999999999999 999999999999999998      


Q ss_pred             ccCCCCCCCCCCCCCCCchhhhhhhccCceEEEEEeCCeeecCCcceEEEEEecCCCCCeEEEEEEecC
Q 028374          142 LQGRSASWKHTLEGPDDMPAHIKSSMFGCTLTIPITDGQLNMGTWQGIWLCEHRDAPTPRKVVITLNGI  210 (210)
Q Consensus       142 ~~~~~~~Y~H~~eG~dn~~AHIKssL~G~SltIPV~dGkL~LGtWQ~I~l~E~~dgpr~R~V~v~v~Ge  210 (210)
                          +..|+|++| +|||+|||||+|+|+|++|||.||+|.|||||+|||||| ||||+|+|+++++||
T Consensus        72 ----~~~y~H~~e-~dn~~AHiks~l~G~s~tipv~~G~L~LGtWQ~Iyl~E~-dg~r~R~v~v~i~Ge  134 (134)
T 2p6h_A           72 ----GGPWKHNLV-DVNAHAHLGNTIIGDSRVIPVVGGRLSLGTWQRILFVEM-DGPRERTVNLLYLGE  134 (134)
T ss_dssp             ----TSSCGGGGT-CSCHHHHHHHHHHCSEEEEEEETTEECCCTTCEEEEEES-SCSCEEEEEEEEEEC
T ss_pred             ----CCCccccCc-CCCHHHhhhhhhcCCeEEEEEECCEECcCCCceEEEEEC-CCCCceEEEEEEecC
Confidence                457999999 999999999999999999999999999999999999999 689999999999997

>1ve0_A Hypothetical protein (ST2072); structural genomics, zinc binding protein, metal binding Pro; 2.00A {Sulfolobus tokodaii}

Probab=100.00  E-value=5.7e-56  Score=358.06  Aligned_cols=133  Identities=30%  Similarity=0.527  Sum_probs=128.2

Q ss_pred             CeEEEEEEEecCCCC-eEEeccHHHHHHHHhhccCcccceEEEEecccceEEEEeccCCchhHHHHHHHHHHhCCCcccc
Q 028374           61 PRWAQKTVTLPPLRR-GCHLITPKIVKEIAQDLSEFKCGLAHLFLLHTSASLTINENYDSDVRDDTETFLNKIVPELYFV  139 (210)
Q Consensus        61 m~~~~~titv~T~~r-g~~dIT~eV~~~V~~~~SgI~~Glv~Vf~~HTTAsLtInEn~Dp~v~~Dl~~~L~rLvP~~~~~  139 (210)
                      |++++++|+|+|++| +++|||++|+++|+    |+++|+|+||++||||||+|||| ||+|+.||+++|+||||+    
T Consensus         1 M~~~~~~i~~~t~~r~~~~dIT~~V~~~v~----gi~~Gl~~vf~~HTTasl~inEn-dp~v~~Dl~~~l~~lvP~----   71 (134)
T 1ve0_A            1 MKIISKEFTVKTRSRFDSIDITEQVSEAIK----GINNGIAHVIVKHTTCAIIINEA-ESGLMKDFLNWAKKLVPP----   71 (134)
T ss_dssp             CEEEEEEEEEECCSSSEEEECHHHHHHHTT----TCSSEEEEEEECCSSEEEEEECC-CHHHHHHHHHHHHHHSCT----
T ss_pred             CcEEEEEEEEecCCCCeEEEChHHHHHHhc----ccCceEEEEEeCCCcEEEEEECC-CccHHHHHHHHHHHHCCC----
Confidence            889999999999876 99999999999996    79999999999999999999999 999999999999999998    


Q ss_pred             ccccCCCCCCCCCCCCCCCchhhhhhhccCceEEEEEeCCeeecCCcceEEEEEecCCCCCeEEEEEEecC
Q 028374          140 SLLQGRSASWKHTLEGPDDMPAHIKSSMFGCTLTIPITDGQLNMGTWQGIWLCEHRDAPTPRKVVITLNGI  210 (210)
Q Consensus       140 ~~~~~~~~~Y~H~~eG~dn~~AHIKssL~G~SltIPV~dGkL~LGtWQ~I~l~E~~dgpr~R~V~v~v~Ge  210 (210)
                            +..|+|++| +|||+|||||+|+|+|++|||.||+|.|||||+|||||| ||||+|+|+++++||
T Consensus        72 ------~~~y~H~~e-~dn~~AHiks~l~G~s~tipV~~G~L~LGtWQ~Iyl~E~-dg~r~R~v~v~i~Ge  134 (134)
T 1ve0_A           72 ------DGEFEHNII-DNNGHAHVISAIIGNSRVVPIIEGKLDLGTWQRIILLEF-DGPRTRTVLVKSMGE  134 (134)
T ss_dssp             ------TSCCGGGGT-CSCHHHHHHHHHHCSEEEEEEETTEECCCTTCEEEEEES-SCSCEEEEEEEEEEC
T ss_pred             ------CCCccccCC-CCChHHhhhhhccCCcEEEEEECCEeccCCCcEEEEEEC-CCCCeeEEEEEEecC
Confidence                  457999999 999999999999999999999999999999999999999 789999999999997

>1vph_A Hypothetical protein SSO2532; YBJQ-like fold, structural genomics, joint center for struct genomics, JCSG, protein structure initiative; 1.76A {Sulfolobus solfataricus} SCOP: d.273.1.1

Probab=100.00  E-value=8.4e-56  Score=362.93  Aligned_cols=137  Identities=26%  Similarity=0.479  Sum_probs=130.1

Q ss_pred             CCCeEEEEEEEecCCC-CeEEeccHHHHHHHHhhccCcccceEEEEecccceEEEEeccCCchhHHHHHHHHHHhCCCcc
Q 028374           59 SNPRWAQKTVTLPPLR-RGCHLITPKIVKEIAQDLSEFKCGLAHLFLLHTSASLTINENYDSDVRDDTETFLNKIVPELY  137 (210)
Q Consensus        59 ~~m~~~~~titv~T~~-rg~~dIT~eV~~~V~~~~SgI~~Glv~Vf~~HTTAsLtInEn~Dp~v~~Dl~~~L~rLvP~~~  137 (210)
                      -.|++|+++|+|+|.+ ++|+|||++|+++|++  ||+++|+|+||++||||||+|||| ||+|+.||+++|+||||+  
T Consensus        11 ~~~~~~~~~l~v~T~~~~~~~dIT~~V~~~v~~--sgi~~Gl~~vf~~HTTAsltInEn-Dp~v~~Dl~~~l~rlvP~--   85 (149)
T 1vph_A           11 HHMKVYFDDIYVSTARQFELVDITDQVEQIVEK--SGIKNGICLIFVAHSTAAIVANEH-ERGLMEDILTKIKEFTEP--   85 (149)
T ss_dssp             -CCEEEEEEEEEEECSSSEEEECHHHHHHHHHH--HCCCSEEEEEEECCSSEEEEEECC-CHHHHHHHHHHHHHHHCT--
T ss_pred             ceeeEEEEEEEEEcCCCCeEEECHHHHHHHHHH--cCCcceEEEEEeCCCcEEEEEECC-CccHHHHHHHHHHHhCCC--
Confidence            4599999999999987 4999999999999998  999999999999999999999999 999999999999999998  


Q ss_pred             ccccccCCCCCCCCCCCCCCCchhhhhhhccCceEEEEEeCCeeecCCcceEEEEEecCCCC-CeEEEEEEecC
Q 028374          138 FVSLLQGRSASWKHTLEGPDDMPAHIKSSMFGCTLTIPITDGQLNMGTWQGIWLCEHRDAPT-PRKVVITLNGI  210 (210)
Q Consensus       138 ~~~~~~~~~~~Y~H~~eG~dn~~AHIKssL~G~SltIPV~dGkL~LGtWQ~I~l~E~~dgpr-~R~V~v~v~Ge  210 (210)
                              +..|+|+.| +|||+|||||+|+|+|++|||.||+|.|||||+||||||| +|| +|+|+|+++||
T Consensus        86 --------~~~y~H~~e-~dn~~AHiKssL~G~S~tiPV~~G~L~LGtWQgIyl~E~d-g~r~~R~v~v~i~Ge  149 (149)
T 1vph_A           86 --------SRSWKHNLI-DDNAHAHLGATFLGAERVFPVREGKLVRGTWQNIFLVELD-GPRSERHITVEILGE  149 (149)
T ss_dssp             --------TSCCGGGGT-CSCHHHHHHHHHHCSEEEEEEETTEECCCTTCEEEEEESS-CCEEEEEEEEEEEEC
T ss_pred             --------CCCccccCc-CCCHHHhhhhhhcCCeEEEEEECCEECcCCCcEEEEEECC-CCCCCeEEEEEEecC
Confidence                    457999988 9999999999999999999999999999999999999995 666 89999999997

>1vmf_A Hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI, unknown function; HET: EPE; 1.46A {Bacillus halodurans} SCOP: d.273.1.1

Probab=100.00  E-value=4.2e-54  Score=351.50  Aligned_cols=131  Identities=37%  Similarity=0.566  Sum_probs=123.6

Q ss_pred             EEEEEEecCCCC-eEEeccHHHHHHHHhhccCcccceEEEEecccceEEEEeccCCchhHHHHHHHHHHhCCCccccccc
Q 028374           64 AQKTVTLPPLRR-GCHLITPKIVKEIAQDLSEFKCGLAHLFLLHTSASLTINENYDSDVRDDTETFLNKIVPELYFVSLL  142 (210)
Q Consensus        64 ~~~titv~T~~r-g~~dIT~eV~~~V~~~~SgI~~Glv~Vf~~HTTAsLtInEn~Dp~v~~Dl~~~L~rLvP~~~~~~~~  142 (210)
                      +.++|+|.|.++ +++|||++|+++|++  |||++|+|+||++||||||+|||||||+|+.||+++|+||||+       
T Consensus        12 ~~~~l~~~t~~~~~~~dIT~~V~~~v~~--sgi~~Gl~~vf~~HTTAsltInEnaDp~v~~Dl~~~l~rlvP~-------   82 (145)
T 1vmf_A           12 HMKTFHLTTQSRDEMVDITSQIETWIRE--TGVTNGVAIVSSLHTTAGITVNENADPDVKRDMIMRLDEVYPW-------   82 (145)
T ss_dssp             CEEEEEECCCSSSEEEECHHHHHHHHHH--HTCCSEEEEEEESCSSEEEEEEESSCHHHHHHHHHHHHHHSCS-------
T ss_pred             ceeEEEEEcCCCCeEEECHHHHHHHHHH--cCCcceEEEEEeCCCcEEEEEeecCCcCHHHHHHHHHHHhcCC-------
Confidence            468999999755 999999999999998  9999999999999999999999999999999999999999998       


Q ss_pred             cCCCC-CCCCCCCCCCCchhhhhhhccCceEEEEEeCCeeecCCcceEEEEEecCCCC-CeEEEEEEecC
Q 028374          143 QGRSA-SWKHTLEGPDDMPAHIKSSMFGCTLTIPITDGQLNMGTWQGIWLCEHRDAPT-PRKVVITLNGI  210 (210)
Q Consensus       143 ~~~~~-~Y~H~~eG~dn~~AHIKssL~G~SltIPV~dGkL~LGtWQ~I~l~E~~dgpr-~R~V~v~v~Ge  210 (210)
                         +. .|+| .||  ||+|||||+|+|+|++|||.||+|.|||||+|||||| |+|| +|+|+|+++||
T Consensus        83 ---~~~~y~H-~EG--n~~AHiKssL~G~S~tiPV~~GrL~LGtWQgIyl~E~-dgpr~~R~v~v~i~Ge  145 (145)
T 1vmf_A           83 ---HHENDRH-MEG--NTAAHLKTSTVGHAQTLIISEGRLVLGTWQGVYFCEF-DGPRTNRKFVVKLLTD  145 (145)
T ss_dssp             ---CCTTCCC-TTS--CHHHHHHHHHHCSEEEEEEETTEECCCTTEEEEEEES-SCCCSCEEEEEEEEEC
T ss_pred             ---CCCCcCc-CCC--CHHHHHHHHhhCCeEEEEEECCEEccCCCceEEEEEC-cCCCCCcEEEEEEecC
Confidence               34 7999 565  8999999999999999999999999999999999999 5899 99999999997

>1vmh_A Uncharacterized conserved protein YJBQ/UPF0047 FA ortholog YUGU B.subtilis; YJBQ-like fold, structural genomics; 1.31A {Clostridium acetobutylicum} SCOP: d.273.1.1 PDB: 1xbf_A

Probab=100.00  E-value=2.8e-53  Score=346.35  Aligned_cols=127  Identities=37%  Similarity=0.575  Sum_probs=120.9

Q ss_pred             EEEEecCCC-CeEEeccHHHHHHHHhhccCcccceEEEEecccceEEEEeccCCchhHHHHHHHHHHhCCCccccccccC
Q 028374           66 KTVTLPPLR-RGCHLITPKIVKEIAQDLSEFKCGLAHLFLLHTSASLTINENYDSDVRDDTETFLNKIVPELYFVSLLQG  144 (210)
Q Consensus        66 ~titv~T~~-rg~~dIT~eV~~~V~~~~SgI~~Glv~Vf~~HTTAsLtInEn~Dp~v~~Dl~~~L~rLvP~~~~~~~~~~  144 (210)
                      ++|+|+|.+ ++++|||++|+++|++  ||+++|+|+||++||||||+|||||||+|+.||+++|+||||+         
T Consensus        17 ~~l~v~T~~~~~~~dIT~~V~~~v~~--sgi~~Gl~~vf~~HTTAsltInEnaDp~v~~Dl~~~l~rlvP~---------   85 (144)
T 1vmh_A           17 IEYSLKTSNDDQFIDITNLVKKAVDE--SGVSDGMAVVFCPHTTAGITINENADPDVTRDILVNLDKVFPK---------   85 (144)
T ss_dssp             CEEEEECCSSSEEEECHHHHHHHHHH--HCCSSEEEEEECCCTTEEEEEEECSCHHHHHHHHHHHHHHSCS---------
T ss_pred             EEEEEEcCCCCeEEECHHHHHHHHHH--cCCcceEEEEEeCCCcEEEEEeecCCcCHHHHHHHHHHHhCCC---------
Confidence            579999985 5999999999999998  9999999999999999999999999999999999999999998         


Q ss_pred             CCCCCCCCCCCCCCchhhhhhhccCceEEEEEeCCeeecCCcceEEEEEecCCCCCeEEEEEEe
Q 028374          145 RSASWKHTLEGPDDMPAHIKSSMFGCTLTIPITDGQLNMGTWQGIWLCEHRDAPTPRKVVITLN  208 (210)
Q Consensus       145 ~~~~Y~H~~eG~dn~~AHIKssL~G~SltIPV~dGkL~LGtWQ~I~l~E~~dgpr~R~V~v~v~  208 (210)
                       +..|+|+   +|||+|||||+|+|+|++|||.||+|.|||||+|||||| |+||+|+|+|+++
T Consensus        86 -~~~y~H~---~dn~~AHikssL~G~S~tiPV~~GrL~LGtWQgIyl~E~-dgpr~R~v~v~i~  144 (144)
T 1vmh_A           86 -VGDYKHV---EGNSHAHIKASLMGSSQQIIIENGKLKLGTWQGIYFTEF-DGPRDRKVFVKII  144 (144)
T ss_dssp             -SSSCCCT---TSCHHHHHHHHHHCSEEEEEEETTEECCCTTEEEEEEES-SCSCEEEEEEEEC
T ss_pred             -CCCcccC---CCCchHHHHHHhhCCeEEEEEECCEECcCCCcEEEEEEC-CCCceeEEEEEEC
Confidence             4569997   789999999999999999999999999999999999999 6899999999985

>2cu5_A Conserved hypothetical protein TT1486; thermus thermophilus HB8, ST genomics, riken structural genomics/proteomics initiative; 1.84A {Thermus thermophilus}

Probab=100.00  E-value=1.3e-51  Score=331.07  Aligned_cols=123  Identities=33%  Similarity=0.546  Sum_probs=114.8

Q ss_pred             EEEecCCCCeEEeccHHHHHHHHhhccCcccceEEEEecccceEEEEeccCCchhHHHHHHHHHHhCCCccccccccCCC
Q 028374           67 TVTLPPLRRGCHLITPKIVKEIAQDLSEFKCGLAHLFLLHTSASLTINENYDSDVRDDTETFLNKIVPELYFVSLLQGRS  146 (210)
Q Consensus        67 titv~T~~rg~~dIT~eV~~~V~~~~SgI~~Glv~Vf~~HTTAsLtInEn~Dp~v~~Dl~~~L~rLvP~~~~~~~~~~~~  146 (210)
                      +|+|++++++++|||++|+++|++     ++|+|+||++||||||+|||||||+|++||+++|+||+|+          +
T Consensus         6 ~i~~~~~~~~~~dIT~~V~~~v~~-----~~Gl~~vf~~HTTasltinEnadp~v~~Dl~~~l~~lvP~----------~   70 (129)
T 2cu5_A            6 RLEVPTPEEGFVNITRKVEAALSG-----HTGLVYLFVPHTTCGLTVQEGADPTVAQDLLGRLAELAPR----------H   70 (129)
T ss_dssp             EEEEEECSSEEEECHHHHHHTSTT-----CCEEEEEECCCSSEEEEEECCSSHHHHHHHHHHHHHHSCS----------C
T ss_pred             EEEEeCCCCeEEECHHHHHHHhhh-----cCcEEEEEeCCCcEEEEEeecCCcCHHHHHHHHHHHhCCC----------C
Confidence            577776677999999999999963     8999999999999999999999999999999999999998          4


Q ss_pred             -CCCCCCCCCCCCchhhhhhhccCceEEEEEeCCeeecCCcceEEEEEecCCCCCeEEEEEEe
Q 028374          147 -ASWKHTLEGPDDMPAHIKSSMFGCTLTIPITDGQLNMGTWQGIWLCEHRDAPTPRKVVITLN  208 (210)
Q Consensus       147 -~~Y~H~~eG~dn~~AHIKssL~G~SltIPV~dGkL~LGtWQ~I~l~E~~dgpr~R~V~v~v~  208 (210)
                       ..|+| .||  ||+|||||+|+|+|++|||.||+|.|||||+|||||| ||||+|+|+++++
T Consensus        71 ~~~y~H-~eG--n~~AHiks~L~G~s~tiPV~~G~L~LGtWQ~Iyl~E~-dg~r~R~v~v~i~  129 (129)
T 2cu5_A           71 RPQDRH-LEG--NSHAHLKSLLTGVHLLLLAEKGRLRLGRWQQVFLAEF-DGPRVREVWVRLL  129 (129)
T ss_dssp             CTTCCC-TTS--CHHHHHHHHHHCSEEEEEEETTEECCCTTCEEEEEES-SCSEEEEEEEEEC
T ss_pred             CCCcCc-CCC--CHHHHHHHHhhCCeEEEEEECCEECcCCCcEEEEEEC-CCCceeEEEEEEC
Confidence             57999 565  8999999999999999999999999999999999999 6899999999985

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	210
d1vmja_	139	d.273.1.1 (A:) Hypothetical protein TM0723 {Thermo	6e-45
d1vmfa_	136	d.273.1.1 (A:) Hypothetical protein BH3498 {Bacill	3e-44
d1vmha_	129	d.273.1.1 (A:) B.subtilis YugU ortolog CAC0907 {Cl	4e-41
d1vpha_	138	d.273.1.1 (A:) Hypothetical protein SSO2532 {Sulfo	3e-39

>d1vmja_ d.273.1.1 (A:) Hypothetical protein TM0723 {Thermotoga maritima [TaxId: 2336]} Length = 139

class: Alpha and beta proteins (a+b)
fold: YjbQ-like
superfamily: YjbQ-like
family: YjbQ-like
domain: Hypothetical protein TM0723
species: Thermotoga maritima [TaxId: 2336]

 Score =  144 bits (364), Expect = 6e-45
 Identities = 40/149 (26%), Positives = 74/149 (49%), Gaps = 13/149 (8%)

Query: 62  RWAQKTVTLP-PLRRGCHLITPKIVKEIAQDLSEFKCGLAHLFLLHTSASLTINENYDSD 120
           +  +K +      RR    ITP + + + +  S  K GL     +H +AS+ IN++    
Sbjct: 2   KSYRKELWFHTKRRREFINITPLLEECVRE--SGIKEGLLLCNAMHITASVFINDDEP-G 58

Query: 121 VRDDTETFLNKIVPELYFVSLLQGRSASWKHTLEGPDDMPAHIKSSMFGCTLTIPITDGQ 180
           +  D E +L K+ PE           + +KH   G D+  AH+K ++ G  + I ITD +
Sbjct: 59  LHHDFEVWLEKLAPEKP--------YSQYKHNDTGEDNADAHLKRTIMGREVVIAITDRK 110

Query: 181 LNMGTWQGIWLCEHRDAPTPRKVVITLNG 209
           +++G W+ ++  E  D   P++V++ + G
Sbjct: 111 MDLGPWEQVFYGEF-DGMRPKRVLVKIIG 138

>d1vmfa_ d.273.1.1 (A:) Hypothetical protein BH3498 {Bacillus halodurans [TaxId: 86665]} Length = 136

class: Alpha and beta proteins (a+b)
fold: YjbQ-like
superfamily: YjbQ-like
family: YjbQ-like
domain: Hypothetical protein BH3498
species: Bacillus halodurans [TaxId: 86665]

 Score =  142 bits (359), Expect = 3e-44
 Identities = 45/146 (30%), Positives = 70/146 (47%), Gaps = 15/146 (10%)

Query: 65  QKTVTLP-PLRRGCHLITPKIVKEIAQDLSEFKCGLAHLFLLHTSASLTINENYDSDVRD 123
            KT  L    R     IT +I   I +  +    G+A +  LHT+A +T+NEN D DV+ 
Sbjct: 4   MKTFHLTTQSRDEMVDITSQIETWIRE--TGVTNGVAIVSSLHTTAGITVNENADPDVKR 61

Query: 124 DTETFLNKIVPELYFVSLLQGRSASWKHTLEGPDDMPAHIKSSMFGCTLTIPITDGQLNM 183
           D    L+++ P               ++      +  AH+K+S  G   T+ I++G+L +
Sbjct: 62  DMIMRLDEVYPW------------HHENDRHMEGNTAAHLKTSTVGHAQTLIISEGRLVL 109

Query: 184 GTWQGIWLCEHRDAPTPRKVVITLNG 209
           GTWQG++ CE     T RK V+ L  
Sbjct: 110 GTWQGVYFCEFDGPRTNRKFVVKLLT 135

>d1vmha_ d.273.1.1 (A:) B.subtilis YugU ortolog CAC0907 {Clostridium acetobutylicum [TaxId: 1488]} Length = 129

class: Alpha and beta proteins (a+b)
fold: YjbQ-like
superfamily: YjbQ-like
family: YjbQ-like
domain: B.subtilis YugU ortolog CAC0907
species: Clostridium acetobutylicum [TaxId: 1488]

 Score =  134 bits (338), Expect = 4e-41
 Identities = 46/134 (34%), Positives = 67/134 (50%), Gaps = 16/134 (11%)

Query: 74  RRGCHLITPKIVKEIAQDLSEFKCGLAHLFLLHTSASLTINENYDSDVRDDTETFLNKIV 133
                 IT  + K + +  S    G+A +F  HT+A +TINEN D DV  D    L+K+ 
Sbjct: 11  DDQFIDITNLVKKAVDE--SGVSDGMAVVFCPHTTAGITINENADPDVTRDILVNLDKVF 68

Query: 134 PELYFVSLLQGRSASWKHTLEGPDDMPAHIKSSMFGCTLTIPITDGQLNMGTWQGIWLCE 193
           P+             +KH      +  AHIK+S+ G +  I I +G+L +GTWQGI+  E
Sbjct: 69  PK----------VGDYKHV---EGNSHAHIKASLMGSSQQIIIENGKLKLGTWQGIYFTE 115

Query: 194 HRDAPTPRKVVITL 207
             D P  RKV + +
Sbjct: 116 F-DGPRDRKVFVKI 128

>d1vpha_ d.273.1.1 (A:) Hypothetical protein SSO2532 {Sulfolobus solfataricus [TaxId: 2287]} Length = 138

class: Alpha and beta proteins (a+b)
fold: YjbQ-like
superfamily: YjbQ-like
family: YjbQ-like
domain: Hypothetical protein SSO2532
species: Sulfolobus solfataricus [TaxId: 2287]

 Score =  129 bits (326), Expect = 3e-39
 Identities = 28/136 (20%), Positives = 56/136 (41%), Gaps = 14/136 (10%)

Query: 74  RRGCHLITPKIVKEIAQDLSEFKCGLAHLFLLHTSASLTINENYDSDVRDDTETFLNKIV 133
           +     IT ++ + + +  S  K G+  +F+ H++A++  NE+    + D          
Sbjct: 16  QFELVDITDQVEQIVEK--SGIKNGICLIFVAHSTAAIVANEHERGLMEDILTKIKEFTE 73

Query: 134 PELYFVSLLQGRSASWKHTLEGPDDMPAHIKSSMFGCTLTIPITDGQLNMGTWQGIWLCE 193
           P   +                  D+  AH+ ++  G     P+ +G+L  GTWQ I+L E
Sbjct: 74  PSRSW------------KHNLIDDNAHAHLGATFLGAERVFPVREGKLVRGTWQNIFLVE 121

Query: 194 HRDAPTPRKVVITLNG 209
                + R + + + G
Sbjct: 122 LDGPRSERHITVEILG 137

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	210
d1vmja_	139	Hypothetical protein TM0723 {Thermotoga maritima [	100.0
d1vmfa_	136	Hypothetical protein BH3498 {Bacillus halodurans [	100.0
d1vpha_	138	Hypothetical protein SSO2532 {Sulfolobus solfatari	100.0
d1vmha_	129	B.subtilis YugU ortolog CAC0907 {Clostridium aceto	100.0

>d1vmja_ d.273.1.1 (A:) Hypothetical protein TM0723 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a+b)
fold: YjbQ-like
superfamily: YjbQ-like
family: YjbQ-like
domain: Hypothetical protein TM0723
species: Thermotoga maritima [TaxId: 2336]

Probab=100.00  E-value=1.7e-56  Score=361.24  Aligned_cols=138  Identities=29%  Similarity=0.507  Sum_probs=132.2

Q ss_pred             CeEEEEEEEecCCCC-eEEeccHHHHHHHHhhccCcccceEEEEecccceEEEEeccCCchhHHHHHHHHHHhCCCcccc
Q 028374           61 PRWAQKTVTLPPLRR-GCHLITPKIVKEIAQDLSEFKCGLAHLFLLHTSASLTINENYDSDVRDDTETFLNKIVPELYFV  139 (210)
Q Consensus        61 m~~~~~titv~T~~r-g~~dIT~eV~~~V~~~~SgI~~Glv~Vf~~HTTAsLtInEn~Dp~v~~Dl~~~L~rLvP~~~~~  139 (210)
                      |++++++|+++|+++ +++|||++|+++|++  |||++|+|+||++||||||+|||| ||+|+.||+++|++|||+    
T Consensus         1 M~~~~~~i~~~T~~~~~~~dIT~~v~~~v~~--s~i~~Giv~vf~~HTTasl~inE~-dp~~~~Dl~~~l~~lvP~----   73 (139)
T d1vmja_           1 MKSYRKELWFHTKRRREFINITPLLEECVRE--SGIKEGLLLCNAMHITASVFINDD-EPGLHHDFEVWLEKLAPE----   73 (139)
T ss_dssp             CEEEEEEEEECCSSSSEEEECHHHHHHHHHH--HCCSSEEEEEEESSTTEEEEEECC-CHHHHHHHHHHHHHHSCC----
T ss_pred             CCcEEEEEEEECCCCCEEEEChHHHHHHHHH--hCCceEEEEEEeCCCceEEEEecC-chhHHhhHHHHHHHhhcc----
Confidence            899999999999876 999999999999999  999999999999999999999999 999999999999999998    


Q ss_pred             ccccCCCCCCCCCCCCCCCchhhhhhhccCceEEEEEeCCeeecCCcceEEEEEecCCCCCeEEEEEEecC
Q 028374          140 SLLQGRSASWKHTLEGPDDMPAHIKSSMFGCTLTIPITDGQLNMGTWQGIWLCEHRDAPTPRKVVITLNGI  210 (210)
Q Consensus       140 ~~~~~~~~~Y~H~~eG~dn~~AHIKssL~G~SltIPV~dGkL~LGtWQ~I~l~E~~dgpr~R~V~v~v~Ge  210 (210)
                          ++...|+|+.+|+|||+|||||+|+|+|++|||.||+|.||+||+|||||| |+||+|+|+|+++||
T Consensus        74 ----~~~~~y~H~~~g~dn~~aHiks~l~g~s~tipi~~G~L~LGtWQ~I~l~E~-dg~r~R~v~v~iiGE  139 (139)
T d1vmja_          74 ----KPYSQYKHNDTGEDNADAHLKRTIMGREVVIAITDRKMDLGPWEQVFYGEF-DGMRPKRVLVKIIGE  139 (139)
T ss_dssp             ----CCGGGCGGGTTSCCCHHHHHHHHHHCSEEEEEEETTEECCCTTCEEEEEES-SCSSCEEEEEEEEEC
T ss_pred             ----CCccccCcCCccCCCcHHHHHHhhhCCeEEEEEECCEECccCCCEEEEEEC-cCCCceEEEEEEEcC
Confidence                222579999999999999999999999999999999999999999999999 699999999999997

>d1vmfa_ d.273.1.1 (A:) Hypothetical protein BH3498 {Bacillus halodurans [TaxId: 86665]}

class: Alpha and beta proteins (a+b)
fold: YjbQ-like
superfamily: YjbQ-like
family: YjbQ-like
domain: Hypothetical protein BH3498
species: Bacillus halodurans [TaxId: 86665]

Probab=100.00  E-value=3.9e-53  Score=340.33  Aligned_cols=132  Identities=34%  Similarity=0.491  Sum_probs=122.3

Q ss_pred             EEEEEEecCCCC-eEEeccHHHHHHHHhhccCcccceEEEEecccceEEEEeccCCchhHHHHHHHHHHhCCCccccccc
Q 028374           64 AQKTVTLPPLRR-GCHLITPKIVKEIAQDLSEFKCGLAHLFLLHTSASLTINENYDSDVRDDTETFLNKIVPELYFVSLL  142 (210)
Q Consensus        64 ~~~titv~T~~r-g~~dIT~eV~~~V~~~~SgI~~Glv~Vf~~HTTAsLtInEn~Dp~v~~Dl~~~L~rLvP~~~~~~~~  142 (210)
                      |+++|+|+|.+| +++|||++|+++|++  |||++|+|+||++||||||+||||+||+|+.||+++|++++|+       
T Consensus         3 ~~~~~~~~T~~~~~~idIT~~V~~~v~~--sgi~~G~v~vf~~HTTasl~inEn~dp~v~~Dl~~~l~~l~P~-------   73 (136)
T d1vmfa_           3 HMKTFHLTTQSRDEMVDITSQIETWIRE--TGVTNGVAIVSSLHTTAGITVNENADPDVKRDMIMRLDEVYPW-------   73 (136)
T ss_dssp             CEEEEEECCCSSSEEEECHHHHHHHHHH--HTCCSEEEEEEESCSSEEEEEEESSCHHHHHHHHHHHHHHSCS-------
T ss_pred             cEEEEEEEECCCCeEEEChHHHHHHHHH--cCCcceEEEEEeCCCceEEEEecCCCccHHHHHHHHHhccCCc-------
Confidence            689999999888 799999999999999  9999999999999999999999999999999999999999997       


Q ss_pred             cCCCCCCCCCCCCCCCchhhhhhhccCceEEEEEeCCeeecCCcceEEEEEecCCCC-CeEEEEEEecC
Q 028374          143 QGRSASWKHTLEGPDDMPAHIKSSMFGCTLTIPITDGQLNMGTWQGIWLCEHRDAPT-PRKVVITLNGI  210 (210)
Q Consensus       143 ~~~~~~Y~H~~eG~dn~~AHIKssL~G~SltIPV~dGkL~LGtWQ~I~l~E~~dgpr-~R~V~v~v~Ge  210 (210)
                         +..|.|  +++|||+|||||+|+|+|++|||.||+|.||+||+||||||| +|| +|+|+|+++||
T Consensus        74 ---~~~~~~--~~~~n~~aHlks~l~g~s~tiPv~~G~L~LGtWQ~I~l~E~d-~~r~~R~v~v~iiGe  136 (136)
T d1vmfa_          74 ---HHENDR--HMEGNTAAHLKTSTVGHAQTLIISEGRLVLGTWQGVYFCEFD-GPRTNRKFVVKLLTD  136 (136)
T ss_dssp             ---CCTTCC--CTTSCHHHHHHHHHHCSEEEEEEETTEECCCTTEEEEEEESS-CCCSCEEEEEEEEEC
T ss_pred             ---ccccce--eccCChHHHHHhhhcCCeEEEEEECCEECccCccEEEEEEcc-CCCCceEEEEEEecC
Confidence               223333  478899999999999999999999999999999999999995 555 79999999997

>d1vpha_ d.273.1.1 (A:) Hypothetical protein SSO2532 {Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a+b)
fold: YjbQ-like
superfamily: YjbQ-like
family: YjbQ-like
domain: Hypothetical protein SSO2532
species: Sulfolobus solfataricus [TaxId: 2287]

Probab=100.00  E-value=2.7e-53  Score=341.70  Aligned_cols=137  Identities=25%  Similarity=0.454  Sum_probs=129.0

Q ss_pred             CCeEEEEEEEecCCCC-eEEeccHHHHHHHHhhccCcccceEEEEecccceEEEEeccCCchhHHHHHHHHHHhCCCccc
Q 028374           60 NPRWAQKTVTLPPLRR-GCHLITPKIVKEIAQDLSEFKCGLAHLFLLHTSASLTINENYDSDVRDDTETFLNKIVPELYF  138 (210)
Q Consensus        60 ~m~~~~~titv~T~~r-g~~dIT~eV~~~V~~~~SgI~~Glv~Vf~~HTTAsLtInEn~Dp~v~~Dl~~~L~rLvP~~~~  138 (210)
                      +|++++++|+|+|.++ +++|||++|+++|++  |||++|+|+||++||||||+|||| ||++++|++++|++++|+   
T Consensus         1 ~M~~~~~~i~v~T~~~~~~~dIT~~V~~~v~~--sgi~~Gl~~vf~~HTTasl~i~En-~~~~~~d~~~~l~~~~p~---   74 (138)
T d1vpha_           1 HMKVYFDDIYVSTARQFELVDITDQVEQIVEK--SGIKNGICLIFVAHSTAAIVANEH-ERGLMEDILTKIKEFTEP---   74 (138)
T ss_dssp             CCEEEEEEEEEEECSSSEEEECHHHHHHHHHH--HCCCSEEEEEEECCSSEEEEEECC-CHHHHHHHHHHHHHHHCT---
T ss_pred             CCceEEEEEEEEECCCCEEEECHHHHHHHHHH--cCCCccEEEEEeCCCeeEEEEEcc-hhhhHHHHHHhhhhhccc---
Confidence            5999999999999888 999999999999999  999999999999999999999998 889999999999999998   


Q ss_pred             cccccCCCCCCCCCCCCCCCchhhhhhhccCceEEEEEeCCeeecCCcceEEEEEecCCCCCeEEEEEEecC
Q 028374          139 VSLLQGRSASWKHTLEGPDDMPAHIKSSMFGCTLTIPITDGQLNMGTWQGIWLCEHRDAPTPRKVVITLNGI  210 (210)
Q Consensus       139 ~~~~~~~~~~Y~H~~eG~dn~~AHIKssL~G~SltIPV~dGkL~LGtWQ~I~l~E~~dgpr~R~V~v~v~Ge  210 (210)
                             +..|.|+ +++|||+|||||+|+|+|++|||.||+|.||+||+|||||||..+++|+|+|+++||
T Consensus        75 -------~~~y~h~-~~~dn~~aHiks~L~g~s~tipi~dG~L~LGtWQ~I~l~E~d~~~~~R~v~v~i~GE  138 (138)
T d1vpha_          75 -------SRSWKHN-LIDDNAHAHLGATFLGAERVFPVREGKLVRGTWQNIFLVELDGPRSERHITVEILGE  138 (138)
T ss_dssp             -------TSCCGGG-GTCSCHHHHHHHHHHCSEEEEEEETTEECCCTTCEEEEEESSCCEEEEEEEEEEEEC
T ss_pred             -------cCcccee-cCCCChHHHHHhhhcCCeEEEEEECCEECccCccEEEEEECcCCCCceEEEEEEEeC
Confidence                   5679996 479999999999999999999999999999999999999995444479999999997

>d1vmha_ d.273.1.1 (A:) B.subtilis YugU ortolog CAC0907 {Clostridium acetobutylicum [TaxId: 1488]}

class: Alpha and beta proteins (a+b)
fold: YjbQ-like
superfamily: YjbQ-like
family: YjbQ-like
domain: B.subtilis YugU ortolog CAC0907
species: Clostridium acetobutylicum [TaxId: 1488]

Probab=100.00  E-value=4.6e-52  Score=331.69  Aligned_cols=126  Identities=37%  Similarity=0.585  Sum_probs=119.9

Q ss_pred             EEEecCCCC-eEEeccHHHHHHHHhhccCcccceEEEEecccceEEEEeccCCchhHHHHHHHHHHhCCCccccccccCC
Q 028374           67 TVTLPPLRR-GCHLITPKIVKEIAQDLSEFKCGLAHLFLLHTSASLTINENYDSDVRDDTETFLNKIVPELYFVSLLQGR  145 (210)
Q Consensus        67 titv~T~~r-g~~dIT~eV~~~V~~~~SgI~~Glv~Vf~~HTTAsLtInEn~Dp~v~~Dl~~~L~rLvP~~~~~~~~~~~  145 (210)
                      +|+|+|+++ +|+|||++|+++|++  ||+++|+|+||++||||||+||||+||+|+.||+++|++|||+          
T Consensus         3 e~t~~T~~~~~~idIT~~V~~~v~~--s~i~~G~v~vf~~HTTasl~inEn~dp~v~~Dl~~~l~~lvP~----------   70 (129)
T d1vmha_           3 EYSLKTSNDDQFIDITNLVKKAVDE--SGVSDGMAVVFCPHTTAGITINENADPDVTRDILVNLDKVFPK----------   70 (129)
T ss_dssp             EEEEECCSSSEEEECHHHHHHHHHH--HCCSSEEEEEECCCTTEEEEEEECSCHHHHHHHHHHHHHHSCS----------
T ss_pred             EEEEEcCCCCEEEEChHHHHHHHHH--cCCcceEEEEEeCCceEEEEEcccCCcchHHHHHHHHHhcCCC----------
Confidence            589999877 799999999999999  9999999999999999999999999999999999999999998          


Q ss_pred             CCCCCCCCCCCCCchhhhhhhccCceEEEEEeCCeeecCCcceEEEEEecCCCCCeEEEEEEe
Q 028374          146 SASWKHTLEGPDDMPAHIKSSMFGCTLTIPITDGQLNMGTWQGIWLCEHRDAPTPRKVVITLN  208 (210)
Q Consensus       146 ~~~Y~H~~eG~dn~~AHIKssL~G~SltIPV~dGkL~LGtWQ~I~l~E~~dgpr~R~V~v~v~  208 (210)
                      +.+|+|.   ++||+||+||+|+|+|++|||.||+|.||+||+|||||| |+||+|+|.|+++
T Consensus        71 ~~~y~H~---~~n~~aHiks~l~g~s~tiPi~~G~L~LGtWQ~I~l~E~-d~~r~R~v~v~ii  129 (129)
T d1vmha_          71 VGDYKHV---EGNSHAHIKASLMGSSQQIIIENGKLKLGTWQGIYFTEF-DGPRDRKVFVKII  129 (129)
T ss_dssp             SSSCCCT---TSCHHHHHHHHHHCSEEEEEEETTEECCCTTEEEEEEES-SCSCEEEEEEEEC
T ss_pred             CCCCccc---cCcchhhhhhHhcCCeEEEEEECCEECcCCccEEEEEEC-cCCceeEEEEEEC
Confidence            5679995   569999999999999999999999999999999999999 6899999999986