Citrus Sinensis ID: 028378

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210
Protein Sequence
MGNVNAREDGSNSPSGVEEGESNNSVQEEGIIVPDGLMGQSPPHSPRATHSPLMFTPQVPVVPLQRPDEMQIPNLSWMQTSSGYEDMGDGVGIPTMITWSHDGCEVAVEGSWDNWKTRIALQRSGKDFTIMKVLPSGVYQYRFLVDGLWKYAPDLPSTQDDDGNVYNILDLQVNITFIPLYKYACFIVAVTCHSLLGFECSYWCYLNSHI
Secondary Structure (PSIPRED)
ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEEEEEcccccEEEEEEccccccEEEcEEEccccEEEEEEcccccEEEEEEEccEEEEcccccEEEcccccEEEEEEEcccccccccccHHHHHHHccccccccccccHHHHHHccc
Secondary Structure Prediction (SSPRO)
cccccccccccccccccccccccccccccccccccHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEEEcccccEEEEEEEccccccccccccccccEEEEEEcccccEEEEEEEcccEEEcccccccccccccEEEEEEEccccccccHHHccEEEEHEHHHHHccccccHHEEEcccc
Coil and Loop (DISEMBL)
mgnvnaredgsnspsgveegesnnsvqeegiivpdglmgqspphsprathsplmftpqvpvvplqrpdemqipnlswmqtssgyedmgdgvgiptmitwshdgcevavegswdnWKTRIALQrsgkdftimkvlpsgvyQYRFLVDGLwkyapdlpstqdddgnvyniLDLQvnitfiplykYACFIVAVTCHSLLGFECSYWCYLNSHI
Flexible Loop (DISEMBL)
mgnvnaredgsnspsgveegesnnsVQEEGIIVPDGLMGQSPPHSPRATHSPLMFTPQVPVVPLQRPDEMQIPNLSWMQTSSGYEDMGDGVGIPTMITWSHDGCEVAVEGSWDNWKTRIALqrsgkdftimkVLPSGVYQYRFLVDGLWKYAPDLPSTQDDDGNVYNILDLQVNITFIPLYKYACFIVAVTCHSLLGFECSYWCYLNSHI
Low Complexity Region (SEG)
MGNVNAREDGSNSPSGVEEGESNNSVQEEGIIVPDGLMGQSPPHSPRATHSPLMFTPQVPVVPLQRPDEMQIPNLSWMQTSSGYEDMGDGVGIPTMITWSHDGCEVAVEGSWDNWKTRIALQRSGKDFTIMKVLPSGVYQYRFLVDGLWKYAPDLPSTQDDDGNVYNILDLQVNITFIPLYKYACFIVAVTCHSLLGFECSYWCYLNSHI
Disordered region (IsUnstruct)
**************************************************************************LSWMQT*SGYEDMGDGVGIPTMITWSHDGCEVAVEGSWDNWKTRIALQRSGKDFTIMKVLPSGVYQYRFLVDGLWKYAPDLPSTQDDDGNVYNILDLQVNITFIPLYKYACFIVAVTCHSLLGFECSYWCYLN***
Disordered Region (DISOPRED)
********************************************************************************************IPTMITWSHDGCEVAVEGSWDNWKTRIALQRSGKDFTIMKVLPSGVYQYRFLVDGLWKYAPDLPSTQDDDGNVYNILDLQVNITF**************************CYLNSHI
Disordered Region (DISEMBL)
*************************VQEEGIIVPDGLMGQSPPHSPRATHSPLMFTPQVPVVPLQRPDEMQIPNLSWMQTSSGYEDMGDGVGIPTMITWSHDGCEVAVEGSWDNWKTRIALQRSGKDFTIMKVLPSGVYQYRFLVDGLWKYAPDLPSTQDDDGNVYNILDLQVNITFIPLYKYACFIVAVTCHSLLGFECSYWCYLNSHI
Disordered Region (DISPRO)
*****************************************************************************************GVGIPTMITWSHDGCEVAVEGSWDNWKTRIALQRSGKDFTIMKVLPSGVYQYRFLVDGLWKYAPDLPSTQDDDGNVYNILDLQVNITFIPLYKYACFIVAVTCHSLLGFECSYWCYLNS**
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MGNVNAREDGSNSPSGVEEGESNNSVQEEGIIVPDGLMGQSPPHSPRATHSPLMFTPQVPVVPLQRPDEMQIPNLSWMQTSSGYEDMGDGVGIPTMITWSHDGCEVAVEGSWDNWKTRIALQRSGKDFTIMKVLPSGVYQYRFLVDGLWKYAPDLPSTQDDDGNVYNILDLQVNITFIPLYKYACFIVAVTCHSLLGFECSYWCYLNSHI
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	210	2.2.26 [Sep-21-2011]
Q9SCY5	289	SNF1-related protein kina	yes	no	0.819	0.595	0.657	1e-62
Q84VQ1	283	SNF1-related protein kina	no	no	0.585	0.434	0.511	1e-30
P78789	298	Uncharacterized protein C	yes	no	0.385	0.271	0.402	8e-13
O43741	272	5'-AMP-activated protein	yes	no	0.576	0.444	0.333	2e-12
Q6PAM0	271	5'-AMP-activated protein	yes	no	0.419	0.324	0.376	3e-12
Q9QZH4	271	5'-AMP-activated protein	yes	no	0.419	0.324	0.376	3e-12
P80387	122	5'-AMP-activated protein	no	no	0.509	0.877	0.336	2e-10
Q5R801	270	5'-AMP-activated protein	yes	no	0.457	0.355	0.346	5e-10
P80386	270	5'-AMP-activated protein	no	no	0.490	0.381	0.330	6e-10
Q9Y478	270	5'-AMP-activated protein	no	no	0.457	0.355	0.346	7e-10

>sp|Q9SCY5|KINB2_ARATH SNF1-related protein kinase regulatory subunit beta-2 OS=Arabidopsis thaliana GN=KINB2 PE=1 SV=1

 Score =  239 bits (609), Expect = 1e-62,   Method: Compositional matrix adjust.
 Identities = 119/181 (65%), Positives = 140/181 (77%), Gaps = 9/181 (4%)

Query: 1   MGNVNAREDG-SNSPSGVEE-------GESNNSVQEEGIIVPDGLMGQSPPHSPRATHSP 52
           MGNVNARE+  SN+ S VE+        E+ ++  +   + P  LMGQSPPHSPRAT SP
Sbjct: 1   MGNVNAREEANSNNASAVEDEDAEICSREAMSAASDGNHVAPPELMGQSPPHSPRATQSP 60

Query: 53  LMFTPQVPVVPLQRPDEMQIPNLSWMQT-SSGYEDMGDGVGIPTMITWSHDGCEVAVEGS 111
           LMF PQVPV+PLQRPDE+ IPN SWMQ+ SS YE+  +  GIPTMITW H G E+AVEGS
Sbjct: 61  LMFAPQVPVLPLQRPDEIHIPNPSWMQSPSSLYEEASNEQGIPTMITWCHGGKEIAVEGS 120

Query: 112 WDNWKTRIALQRSGKDFTIMKVLPSGVYQYRFLVDGLWKYAPDLPSTQDDDGNVYNILDL 171
           WDNWKTR  LQRSGKDFTIMKVLPSGVY+YRF+VDG W++AP+LP  +DD GN +NILDL
Sbjct: 121 WDNWKTRSRLQRSGKDFTIMKVLPSGVYEYRFIVDGQWRHAPELPLARDDAGNTFNILDL 180

Query: 172 Q 172
           Q
Sbjct: 181 Q 181

Regulatory subunit of the probable trimeric SNF1-related protein kinase (SnRK) complex, which may play a role in a signal transduction cascade regulating gene expression and carbohydrate metabolism in higher plants. The SnRK complex may also be involved in the regulation of fatty acid synthesis by phosphorylation of acetyl-CoA carboxylase and in assimilation of nitrogen by phosphorylating nitrate reductase.
Arabidopsis thaliana (taxid: 3702)

>sp|Q84VQ1|KINB1_ARATH SNF1-related protein kinase regulatory subunit beta-1 OS=Arabidopsis thaliana GN=KINB1 PE=1 SV=1

 Score =  132 bits (333), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 65/127 (51%), Positives = 87/127 (68%), Gaps = 4/127 (3%)

Query: 53  LMFTPQVPVVPLQRPDEMQIPNLSWMQTSSGYEDMGDGVGIPTMITWSHDGCEVAVEGSW 112
            +F PQVPV PLQR +     N+ W Q+   +++  +  GIPT+ITW+  G +VAVEGSW
Sbjct: 61  FLFAPQVPVAPLQRANAPPPNNIQWNQSQRVFDNPPEQ-GIPTIITWNQGGNDVAVEGSW 119

Query: 113 DNWKTRIALQRSGKDFTIMKVLPSGVYQYRFLVDGLWKYAPDLPSTQDDDGNVYNILDLQ 172
           DNW++R  LQ+SGKD +I+ VLPSG+Y Y+ +VDG  KY PDLP   D+ GNV NILD+ 
Sbjct: 120 DNWRSRKKLQKSGKDHSILFVLPSGIYHYKVIVDGESKYIPDLPFVADEVGNVCNILDVH 179

Query: 173 VNITFIP 179
               F+P
Sbjct: 180 ---NFVP 183

Regulatory subunit of the probable trimeric SNF1-related protein kinase (SnRK) complex, which may play a role in a signal transduction cascade regulating gene expression and carbohydrate metabolism in higher plants. The SnRK complex may also be involved in the regulation of fatty acid synthesis by phosphorylation of acetyl-CoA carboxylase and in assimilation of nitrogen by phosphorylating nitrate reductase.

Arabidopsis thaliana (taxid: 3702)

>sp|P78789|YC63_SCHPO Uncharacterized protein C1919.03c OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPCC1919.03c PE=1 SV=2

 Score = 73.6 bits (179), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 33/82 (40%), Positives = 53/82 (64%), Gaps = 1/82 (1%)

Query: 93  IPTMITWSHDGCEVAVEGSWDNWKTRIALQRSGKDFTIMKVLPSGVYQYRFLVDGLWKYA 152
           +PT+I W   G  V V GS+  WK +I L +S +D+T++  L  G  +++FLVDG+W  +
Sbjct: 99  VPTIIRWRGGGEVVYVTGSFSRWKKKIQLLKS-EDYTVLLQLRPGTQRFKFLVDGIWCCS 157

Query: 153 PDLPSTQDDDGNVYNILDLQVN 174
            D P+  D +GN+YN L+++ N
Sbjct: 158 SDFPTATDAEGNLYNYLEVEAN 179

Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812)

>sp|O43741|AAKB2_HUMAN 5'-AMP-activated protein kinase subunit beta-2 OS=Homo sapiens GN=PRKAB2 PE=1 SV=1

 Score = 72.8 bits (177), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 46/138 (33%), Positives = 69/138 (50%), Gaps = 17/138 (12%)

Query: 44  HSPRATHSPLMFTPQVPVVPLQRPDEMQIPN----LSWMQTSSGYEDMGDGV-----GIP 94
           H+P   H  ++ +   P V    PD  ++P     +SW Q      D+ D V       P
Sbjct: 27  HAPGKEHKIMVGSTDDPSV-FSLPDS-KLPGDKEFVSWQQ------DLEDSVKPTQQARP 78

Query: 95  TMITWSHDGCEVAVEGSWDNWKTRIALQRSGKDFTIMKVLPSGVYQYRFLVDGLWKYAPD 154
           T+I WS  G EV + GS++NW T+I L +S  DF  +  LP G +QY+F VDG W + P 
Sbjct: 79  TVIRWSEGGKEVFISGSFNNWSTKIPLIKSHNDFVAILDLPEGEHQYKFFVDGQWVHDPS 138

Query: 155 LPSTQDDDGNVYNILDLQ 172
            P      G + N++ ++
Sbjct: 139 EPVVTSQLGTINNLIHVK 156

Non-catalytic subunit of AMP-activated protein kinase (AMPK), an energy sensor protein kinase that plays a key role in regulating cellular energy metabolism. In response to reduction of intracellular ATP levels, AMPK activates energy-producing pathways and inhibits energy-consuming processes: inhibits protein, carbohydrate and lipid biosynthesis, as well as cell growth and proliferation. AMPK acts via direct phosphorylation of metabolic enzymes, and by longer-term effects via phosphorylation of transcription regulators. Also acts as a regulator of cellular polarity by remodeling the actin cytoskeleton; probably by indirectly activating myosin. Beta non-catalytic subunit acts as a scaffold on which the AMPK complex assembles, via its C-terminus that bridges alpha (PRKAA1 or PRKAA2) and gamma subunits (PRKAG1, PRKAG2 or PRKAG3).

Homo sapiens (taxid: 9606)

>sp|Q6PAM0|AAKB2_MOUSE 5'-AMP-activated protein kinase subunit beta-2 OS=Mus musculus GN=Prkab2 PE=1 SV=1

 Score = 72.0 bits (175), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 35/93 (37%), Positives = 52/93 (55%), Gaps = 5/93 (5%)

Query: 85  EDMGDGV-----GIPTMITWSHDGCEVAVEGSWDNWKTRIALQRSGKDFTIMKVLPSGVY 139
           +D+ D V       PT+I WS  G EV + GS++NW T+I L +S  DF  +  LP G +
Sbjct: 63  QDLDDSVKPAQQARPTVIRWSEGGKEVFISGSFNNWSTKIPLIKSHNDFVAILDLPEGEH 122

Query: 140 QYRFLVDGLWKYAPDLPSTQDDDGNVYNILDLQ 172
           QY+F VDG W + P  P      G + N++ ++
Sbjct: 123 QYKFFVDGQWVHDPSEPVVTSQLGTINNLIHVK 155

Non-catalytic subunit of AMP-activated protein kinase (AMPK), an energy sensor protein kinase that plays a key role in regulating cellular energy metabolism. In response to reduction of intracellular ATP levels, AMPK activates energy-producing pathways and inhibits energy-consuming processes: inhibits protein, carbohydrate and lipid biosynthesis, as well as cell growth and proliferation. AMPK acts via direct phosphorylation of metabolic enzymes, and by longer-term effects via phosphorylation of transcription regulators. Also acts as a regulator of cellular polarity by remodeling the actin cytoskeleton; probably by indirectly activating myosin. Beta non-catalytic subunit acts as a scaffold on which the AMPK complex assembles, via its C-terminus that bridges alpha (PRKAA1 or PRKAA2) and gamma subunits (PRKAG1, PRKAG2 or PRKAG3).

Mus musculus (taxid: 10090)

>sp|Q9QZH4|AAKB2_RAT 5'-AMP-activated protein kinase subunit beta-2 OS=Rattus norvegicus GN=Prkab2 PE=1 SV=1

 Score = 72.0 bits (175), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 35/93 (37%), Positives = 52/93 (55%), Gaps = 5/93 (5%)

Query: 85  EDMGDGV-----GIPTMITWSHDGCEVAVEGSWDNWKTRIALQRSGKDFTIMKVLPSGVY 139
           +D+ D V       PT+I WS  G EV + GS++NW T+I L +S  DF  +  LP G +
Sbjct: 63  QDLDDSVKPTQQARPTVIRWSEGGKEVFISGSFNNWSTKIPLIKSHNDFVAILDLPEGEH 122

Query: 140 QYRFLVDGLWKYAPDLPSTQDDDGNVYNILDLQ 172
           QY+F VDG W + P  P      G + N++ ++
Sbjct: 123 QYKFFVDGQWVHDPSEPVVTSQLGTINNLIHVK 155

Non-catalytic subunit of AMP-activated protein kinase (AMPK), an energy sensor protein kinase that plays a key role in regulating cellular energy metabolism. In response to reduction of intracellular ATP levels, AMPK activates energy-producing pathways and inhibits energy-consuming processes: inhibits protein, carbohydrate and lipid biosynthesis, as well as cell growth and proliferation. AMPK acts via direct phosphorylation of metabolic enzymes, and by longer-term effects via phosphorylation of transcription regulators. Also acts as a regulator of cellular polarity by remodeling the actin cytoskeleton; probably by indirectly activating myosin. Beta non-catalytic subunit acts as a scaffold on which the AMPK complex assembles, via its C-terminus that bridges alpha (PRKAA1 or PRKAA2) and gamma subunits (PRKAG1, PRKAG2 or PRKAG3).

Rattus norvegicus (taxid: 10116)

>sp|P80387|AAKB1_PIG 5'-AMP-activated protein kinase subunit beta-1 (Fragment) OS=Sus scrofa GN=PRKAB1 PE=1 SV=1

 Score = 65.5 bits (158), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 38/113 (33%), Positives = 58/113 (51%), Gaps = 6/113 (5%)

Query: 64  LQRPDEMQIPN----LSWMQTSSGYEDMGDGVGIPTMITWSHDGCEVAVEGSWDNWKTRI 119
           L   +E++ P     L+W Q      D       PT+  W+  G EV + GS++NW +++
Sbjct: 11  LYHSEEIKAPEKEEFLAW-QHDLEVNDKASAQARPTVFRWTGGGKEVYLSGSFNNW-SKL 68

Query: 120 ALQRSGKDFTIMKVLPSGVYQYRFLVDGLWKYAPDLPSTQDDDGNVYNILDLQ 172
            L RS  +F  +  LP G +QY+FLVDG W + P  P      G V NI+ ++
Sbjct: 69  PLTRSHNNFVAILDLPEGEHQYKFLVDGQWTHDPSEPVVTSQLGTVNNIIQVK 121

Non-catalytic subunit of AMP-activated protein kinase (AMPK), an energy sensor protein kinase that plays a key role in regulating cellular energy metabolism. In response to reduction of intracellular ATP levels, AMPK activates energy-producing pathways and inhibits energy-consuming processes: inhibits protein, carbohydrate and lipid biosynthesis, as well as cell growth and proliferation. AMPK acts via direct phosphorylation of metabolic enzymes, and by longer-term effects via phosphorylation of transcription regulators. Also acts as a regulator of cellular polarity by remodeling the actin cytoskeleton; probably by indirectly activating myosin. Beta non-catalytic subunit acts as a scaffold on which the AMPK complex assembles, via its C-terminus that bridges alpha (PRKAA1 or PRKAA2) and gamma subunits (PRKAG1, PRKAG2 or PRKAG3).

Sus scrofa (taxid: 9823)

>sp|Q5R801|AAKB1_PONAB 5'-AMP-activated protein kinase subunit beta-1 OS=Pongo abelii GN=PRKAB1 PE=2 SV=3

 Score = 64.3 bits (155), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 34/98 (34%), Positives = 51/98 (52%), Gaps = 2/98 (2%)

Query: 75  LSWMQTSSGYEDMGDGVGIPTMITWSHDGCEVAVEGSWDNWKTRIALQRSGKDFTIMKVL 134
           L+W Q      D       PT+  W+  G EV + GS++NW +++ L RS  +F  +  L
Sbjct: 61  LAW-QRDLEVNDKAPAQARPTVFRWTGGGKEVYLSGSFNNW-SKLPLTRSHNNFVAILDL 118

Query: 135 PSGVYQYRFLVDGLWKYAPDLPSTQDDDGNVYNILDLQ 172
           P G +QY+F VDG W + P  P      G V NI+ ++
Sbjct: 119 PEGEHQYKFFVDGQWTHDPSEPIVTSQLGTVNNIIQVK 156

Non-catalytic subunit of AMP-activated protein kinase (AMPK), an energy sensor protein kinase that plays a key role in regulating cellular energy metabolism. In response to reduction of intracellular ATP levels, AMPK activates energy-producing pathways and inhibits energy-consuming processes: inhibits protein, carbohydrate and lipid biosynthesis, as well as cell growth and proliferation. AMPK acts via direct phosphorylation of metabolic enzymes, and by longer-term effects via phosphorylation of transcription regulators. Also acts as a regulator of cellular polarity by remodeling the actin cytoskeleton; probably by indirectly activating myosin. Beta non-catalytic subunit acts as a scaffold on which the AMPK complex assembles, via its C-terminus that bridges alpha (PRKAA1 or PRKAA2) and gamma subunits (PRKAG1, PRKAG2 or PRKAG3).

Pongo abelii (taxid: 9601)

>sp|P80386|AAKB1_RAT 5'-AMP-activated protein kinase subunit beta-1 OS=Rattus norvegicus GN=Prkab1 PE=1 SV=4

 Score = 64.3 bits (155), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 36/109 (33%), Positives = 56/109 (51%), Gaps = 6/109 (5%)

Query: 68  DEMQIPN----LSWMQTSSGYEDMGDGVGIPTMITWSHDGCEVAVEGSWDNWKTRIALQR 123
           +EM+ P     L+W Q      +       PT+  W+  G EV + GS++NW +++ L R
Sbjct: 50  EEMKAPEKEEFLAW-QHDLEVNEKAPAQARPTVFRWTGGGKEVYLSGSFNNW-SKLPLTR 107

Query: 124 SGKDFTIMKVLPSGVYQYRFLVDGLWKYAPDLPSTQDDDGNVYNILDLQ 172
           S  +F  +  LP G +QY+F VDG W + P  P      G V NI+ ++
Sbjct: 108 SQNNFVAILDLPEGEHQYKFFVDGQWTHDPSEPIVTSQLGTVNNIIQVK 156

Non-catalytic subunit of AMP-activated protein kinase (AMPK), an energy sensor protein kinase that plays a key role in regulating cellular energy metabolism. In response to reduction of intracellular ATP levels, AMPK activates energy-producing pathways and inhibits energy-consuming processes: inhibits protein, carbohydrate and lipid biosynthesis, as well as cell growth and proliferation. AMPK acts via direct phosphorylation of metabolic enzymes, and by longer-term effects via phosphorylation of transcription regulators. Also acts as a regulator of cellular polarity by remodeling the actin cytoskeleton; probably by indirectly activating myosin. Beta non-catalytic subunit acts as a scaffold on which the AMPK complex assembles, via its C-terminus that bridges alpha (PRKAA1 or PRKAA2) and gamma subunits (PRKAG1, PRKAG2 or PRKAG3).

Rattus norvegicus (taxid: 10116)

>sp|Q9Y478|AAKB1_HUMAN 5'-AMP-activated protein kinase subunit beta-1 OS=Homo sapiens GN=PRKAB1 PE=1 SV=4

 Score = 63.9 bits (154), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 34/98 (34%), Positives = 51/98 (52%), Gaps = 2/98 (2%)

Query: 75  LSWMQTSSGYEDMGDGVGIPTMITWSHDGCEVAVEGSWDNWKTRIALQRSGKDFTIMKVL 134
           L+W Q      D       PT+  W+  G EV + GS++NW +++ L RS  +F  +  L
Sbjct: 61  LAW-QHDLEVNDKAPAQARPTVFRWTGGGKEVYLSGSFNNW-SKLPLTRSHNNFVAILDL 118

Query: 135 PSGVYQYRFLVDGLWKYAPDLPSTQDDDGNVYNILDLQ 172
           P G +QY+F VDG W + P  P      G V NI+ ++
Sbjct: 119 PEGEHQYKFFVDGQWTHDPSEPIVTSQLGTVNNIIQVK 156

Non-catalytic subunit of AMP-activated protein kinase (AMPK), an energy sensor protein kinase that plays a key role in regulating cellular energy metabolism. In response to reduction of intracellular ATP levels, AMPK activates energy-producing pathways and inhibits energy-consuming processes: inhibits protein, carbohydrate and lipid biosynthesis, as well as cell growth and proliferation. AMPK acts via direct phosphorylation of metabolic enzymes, and by longer-term effects via phosphorylation of transcription regulators. Also acts as a regulator of cellular polarity by remodeling the actin cytoskeleton; probably by indirectly activating myosin. Beta non-catalytic subunit acts as a scaffold on which the AMPK complex assembles, via its C-terminus that bridges alpha (PRKAA1 or PRKAA2) and gamma subunits (PRKAG1, PRKAG2 or PRKAG3).

Homo sapiens (taxid: 9606)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	210
224086343	293	predicted protein [Populus trichocarpa]	0.838	0.600	0.651	1e-62
356555761	292	PREDICTED: SNF1-related protein kinase r	0.819	0.589	0.690	2e-62
255563760	307	snf1-kinase beta subunit, plants, putati	0.819	0.560	0.663	4e-62
62900625	289	RecName: Full=SNF1-related protein kinas	0.819	0.595	0.657	6e-61
388495250	287	unknown [Medicago truncatula]	0.823	0.602	0.657	2e-60
32364488	287	AKIN beta2 [Medicago truncatula]	0.823	0.602	0.657	2e-60
359496111	301	PREDICTED: SNF1-related protein kinase r	0.814	0.568	0.639	3e-60
217073870	190	unknown [Medicago truncatula]	0.823	0.910	0.657	1e-59
356532768	303	PREDICTED: SNF1-related protein kinase r	0.819	0.567	0.625	3e-59
224137216	261	predicted protein [Populus trichocarpa]	0.680	0.547	0.739	2e-58

>gi|224086343|ref|XP_002307855.1| predicted protein [Populus trichocarpa] gi|222853831|gb|EEE91378.1| predicted protein [Populus trichocarpa]

 Score =  244 bits (624), Expect = 1e-62,   Method: Compositional matrix adjust.
 Identities = 125/192 (65%), Positives = 144/192 (75%), Gaps = 16/192 (8%)

Query: 1   MGNVNARED--GSNSPSGVEEGESNNSVQEEGIIV-----------PDGLMGQSPPHSPR 47
           MGNVN RE+  G+ SPS V  GE   S   E ++            P  +MG SPPHSPR
Sbjct: 1   MGNVNGREEEEGAISPSSVGGGEGERSDSSEVMVASDESHVSYPAPPPEMMGHSPPHSPR 60

Query: 48  ATHSPLMFTPQVPVVPLQRPDEMQIPNLSWMQTSSGYEDMGDGVGIPTMITWSHDGCEVA 107
           ATHSPL+FTPQVPV PLQRPDE+QIP+ SWMQTS GYE+M +  GIPTMITWS+ G EVA
Sbjct: 61  ATHSPLLFTPQVPVAPLQRPDEIQIPSHSWMQTSLGYEEMCNEHGIPTMITWSYGGKEVA 120

Query: 108 VEGSWDNWKTRIALQRSGKDFTIMKVLPSGVYQYRFLVDGLWKYAPDLPSTQDDDGNVYN 167
           VEGSWD+WKTRI LQRSGKD+TIMKVLPSGVYQYRF+VDG W+Y+PDLP  +DD GN +N
Sbjct: 121 VEGSWDDWKTRIPLQRSGKDYTIMKVLPSGVYQYRFIVDGQWRYSPDLPWAKDDAGNAHN 180

Query: 168 ILDLQVNITFIP 179
            LDLQ    F+P
Sbjct: 181 TLDLQ---DFVP 189

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356555761|ref|XP_003546198.1| PREDICTED: SNF1-related protein kinase regulatory subunit beta-2-like [Glycine max]

 Score =  244 bits (622), Expect = 2e-62,   Method: Compositional matrix adjust.
 Identities = 127/184 (69%), Positives = 142/184 (77%), Gaps = 12/184 (6%)

Query: 1   MGNVNAREDGSNSPSGVEEGES-------NNSVQE-----EGIIVPDGLMGQSPPHSPRA 48
           MGNVN R+D + +PSG E  E        ++SV +      G   P  LMG SPP SPRA
Sbjct: 1   MGNVNGRDDVNGTPSGTEGEEEEAGEEGGSDSVADCMSSNPGHRAPSELMGHSPPASPRA 60

Query: 49  THSPLMFTPQVPVVPLQRPDEMQIPNLSWMQTSSGYEDMGDGVGIPTMITWSHDGCEVAV 108
           T SP MFTPQVPVVPLQ+PDEM  P+ SWMQT+SGYEDM   +GIPTMITWS+DG EVAV
Sbjct: 61  TQSPFMFTPQVPVVPLQKPDEMHAPSPSWMQTTSGYEDMYCELGIPTMITWSYDGKEVAV 120

Query: 109 EGSWDNWKTRIALQRSGKDFTIMKVLPSGVYQYRFLVDGLWKYAPDLPSTQDDDGNVYNI 168
           EGSWDNWKTR+ALQRSGKDFTIMKVLPSGVYQ+RF+VDG W+YAPDLP  QDD GN YNI
Sbjct: 121 EGSWDNWKTRMALQRSGKDFTIMKVLPSGVYQFRFIVDGQWRYAPDLPWAQDDAGNAYNI 180

Query: 169 LDLQ 172
           LDLQ
Sbjct: 181 LDLQ 184

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255563760|ref|XP_002522881.1| snf1-kinase beta subunit, plants, putative [Ricinus communis] gi|223537866|gb|EEF39481.1| snf1-kinase beta subunit, plants, putative [Ricinus communis]

 Score =  243 bits (620), Expect = 4e-62,   Method: Compositional matrix adjust.
 Identities = 132/199 (66%), Positives = 146/199 (73%), Gaps = 27/199 (13%)

Query: 1   MGNVNAR--EDGSNSPSGVEEGESNNS--------VQEEG------IIVPDG-------- 36
           MGNVN R  EDG N+     +  S +S        V EEG      ++VPDG        
Sbjct: 1   MGNVNGRGEEDGENNIINNNKSPSGSSRGGGIGVVVDEEGGCGTDGVVVPDGSRLAYLPP 60

Query: 37  ---LMGQSPPHSPRATHSPLMFTPQVPVVPLQRPDEMQIPNLSWMQTSSGYEDMGDGVGI 93
              LMGQSPPHSPRATHSPLMFTPQVPVVPLQRPDE+QIP+ SWMQT+ GYED+ D  GI
Sbjct: 61  PPELMGQSPPHSPRATHSPLMFTPQVPVVPLQRPDEIQIPSNSWMQTNVGYEDICDEQGI 120

Query: 94  PTMITWSHDGCEVAVEGSWDNWKTRIALQRSGKDFTIMKVLPSGVYQYRFLVDGLWKYAP 153
           PTMITWS+ G EVAVEGSWDNWK RI LQRSGKD+TIMKVLPSGVYQYRF++DG W+Y P
Sbjct: 121 PTMITWSYGGKEVAVEGSWDNWKMRIPLQRSGKDYTIMKVLPSGVYQYRFIIDGQWRYIP 180

Query: 154 DLPSTQDDDGNVYNILDLQ 172
           DLP  QDD GN YNILDLQ
Sbjct: 181 DLPWAQDDTGNAYNILDLQ 199

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|62900625|sp|Q9SCY5.1|KINB2_ARATH RecName: Full=SNF1-related protein kinase regulatory subunit beta-2; Short=AKIN subunit beta-2; Short=AKINB2; Short=AKINbeta2 gi|13430672|gb|AAK25958.1|AF360248_1 putative kinase [Arabidopsis thaliana] gi|6686784|emb|CAB64719.1| AKIN beta2 [Arabidopsis thaliana] gi|56744220|gb|AAW28550.1| At4g16360 [Arabidopsis thaliana]

 Score =  239 bits (609), Expect = 6e-61,   Method: Compositional matrix adjust.
 Identities = 119/181 (65%), Positives = 140/181 (77%), Gaps = 9/181 (4%)

Query: 1   MGNVNAREDG-SNSPSGVEE-------GESNNSVQEEGIIVPDGLMGQSPPHSPRATHSP 52
           MGNVNARE+  SN+ S VE+        E+ ++  +   + P  LMGQSPPHSPRAT SP
Sbjct: 1   MGNVNAREEANSNNASAVEDEDAEICSREAMSAASDGNHVAPPELMGQSPPHSPRATQSP 60

Query: 53  LMFTPQVPVVPLQRPDEMQIPNLSWMQT-SSGYEDMGDGVGIPTMITWSHDGCEVAVEGS 111
           LMF PQVPV+PLQRPDE+ IPN SWMQ+ SS YE+  +  GIPTMITW H G E+AVEGS
Sbjct: 61  LMFAPQVPVLPLQRPDEIHIPNPSWMQSPSSLYEEASNEQGIPTMITWCHGGKEIAVEGS 120

Query: 112 WDNWKTRIALQRSGKDFTIMKVLPSGVYQYRFLVDGLWKYAPDLPSTQDDDGNVYNILDL 171
           WDNWKTR  LQRSGKDFTIMKVLPSGVY+YRF+VDG W++AP+LP  +DD GN +NILDL
Sbjct: 121 WDNWKTRSRLQRSGKDFTIMKVLPSGVYEYRFIVDGQWRHAPELPLARDDAGNTFNILDL 180

Query: 172 Q 172
           Q
Sbjct: 181 Q 181

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388495250|gb|AFK35691.1| unknown [Medicago truncatula]

 Score =  238 bits (606), Expect = 2e-60,   Method: Compositional matrix adjust.
 Identities = 121/184 (65%), Positives = 138/184 (75%), Gaps = 11/184 (5%)

Query: 1   MGNVNAREDGSNSPSGVEEGESNNSVQEEGIIVPDG---------LMGQSPPHSPRATHS 51
           MGNVN RE+  N    +    S +S   + +  PDG         LMG SPP SPR T S
Sbjct: 1   MGNVNGREEDFNG--TLSSASSTSSEVSDSMSAPDGVVENPSPVELMGHSPPASPRTTQS 58

Query: 52  PLMFTPQVPVVPLQRPDEMQIPNLSWMQTSSGYEDMGDGVGIPTMITWSHDGCEVAVEGS 111
           PLMFTPQ PVVPLQRPDEMQ+P+ S MQT+SGYEDM   +GIPTMITWS+DG EVAVEGS
Sbjct: 59  PLMFTPQAPVVPLQRPDEMQVPSPSLMQTNSGYEDMFSEIGIPTMITWSYDGKEVAVEGS 118

Query: 112 WDNWKTRIALQRSGKDFTIMKVLPSGVYQYRFLVDGLWKYAPDLPSTQDDDGNVYNILDL 171
           WDNWKTR+ LQRSGKDFTIMKVLPSGVYQ+RF+VDG W+YAPDLP  +DD  N YNILDL
Sbjct: 119 WDNWKTRMPLQRSGKDFTIMKVLPSGVYQFRFIVDGQWRYAPDLPWARDDAANTYNILDL 178

Query: 172 QVNI 175
           Q ++
Sbjct: 179 QDSV 182

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|32364488|gb|AAO61677.1| AKIN beta2 [Medicago truncatula]

 Score =  238 bits (606), Expect = 2e-60,   Method: Compositional matrix adjust.
 Identities = 121/184 (65%), Positives = 138/184 (75%), Gaps = 11/184 (5%)

Query: 1   MGNVNAREDGSNSPSGVEEGESNNSVQEEGIIVPDG---------LMGQSPPHSPRATHS 51
           MGNVN RE+  N    +    S +S   + +  PDG         LMG SPP SPR T S
Sbjct: 1   MGNVNGREEDFNG--TLSSASSTSSEVSDSMSAPDGVVENPSPVELMGHSPPASPRTTQS 58

Query: 52  PLMFTPQVPVVPLQRPDEMQIPNLSWMQTSSGYEDMGDGVGIPTMITWSHDGCEVAVEGS 111
           PLMFTPQ PVVPLQRPDEMQ+P+ S MQT+SGYEDM   +GIPTMITWS+DG EVAVEGS
Sbjct: 59  PLMFTPQAPVVPLQRPDEMQVPSPSLMQTNSGYEDMFSEIGIPTMITWSYDGKEVAVEGS 118

Query: 112 WDNWKTRIALQRSGKDFTIMKVLPSGVYQYRFLVDGLWKYAPDLPSTQDDDGNVYNILDL 171
           WDNWKTR+ LQRSGKDFTIMKVLPSGVYQ+RF+VDG W+YAPDLP  +DD  N YNILDL
Sbjct: 119 WDNWKTRMPLQRSGKDFTIMKVLPSGVYQFRFIVDGQWRYAPDLPWARDDAANTYNILDL 178

Query: 172 QVNI 175
           Q ++
Sbjct: 179 QDSV 182

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359496111|ref|XP_002270146.2| PREDICTED: SNF1-related protein kinase regulatory subunit beta-2-like [Vitis vinifera]

 Score =  237 bits (604), Expect = 3e-60,   Method: Compositional matrix adjust.
 Identities = 124/194 (63%), Positives = 136/194 (70%), Gaps = 23/194 (11%)

Query: 1   MGNVNAREDGSNSPSGVEE---------------GESNNSVQEEGIIV-------PDGLM 38
           MGNVN REDG  SPS V                    N + + E  +        P+ LM
Sbjct: 1   MGNVNGREDGGGSPSTVGVEEEGGGDGGGGGSGGAHQNMATRLETHVSYHPSSGSPE-LM 59

Query: 39  GQSPPHSPRATHSPLMFTPQVPVVPLQRPDEMQIPNLSWMQTSSGYEDMGDGVGIPTMIT 98
           GQSPPHSPRAT SPLMFTPQ+PV+PLQ+PDEM I N SWMQ SSGYEDM    GIPTMIT
Sbjct: 60  GQSPPHSPRATQSPLMFTPQIPVIPLQKPDEMLITNHSWMQASSGYEDMCSEQGIPTMIT 119

Query: 99  WSHDGCEVAVEGSWDNWKTRIALQRSGKDFTIMKVLPSGVYQYRFLVDGLWKYAPDLPST 158
           WS+ G EVAVEGSWDNWK R  LQRSGK+FTIMKVLPSGVYQYRF+VDG W+Y PD+P  
Sbjct: 120 WSYGGKEVAVEGSWDNWKIRKPLQRSGKEFTIMKVLPSGVYQYRFIVDGQWRYIPDMPWA 179

Query: 159 QDDDGNVYNILDLQ 172
           QDD GN YNILDLQ
Sbjct: 180 QDDAGNAYNILDLQ 193

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|217073870|gb|ACJ85295.1| unknown [Medicago truncatula]

 Score =  234 bits (598), Expect = 1e-59,   Method: Compositional matrix adjust.
 Identities = 121/184 (65%), Positives = 138/184 (75%), Gaps = 11/184 (5%)

Query: 1   MGNVNAREDGSNSPSGVEEGESNNSVQEEGIIVPDG---------LMGQSPPHSPRATHS 51
           MGNVN RE+  N    +    S +S   + +  PDG         LMG SPP SPR T S
Sbjct: 1   MGNVNGREEDFNG--TLSSASSTSSEVSDSMSAPDGVVENPSPVELMGHSPPASPRTTQS 58

Query: 52  PLMFTPQVPVVPLQRPDEMQIPNLSWMQTSSGYEDMGDGVGIPTMITWSHDGCEVAVEGS 111
           PLMFTPQ PVVPLQRPDEMQ+P+ S MQT+SGYEDM   +GIPTMITWS+DG EVAVEGS
Sbjct: 59  PLMFTPQAPVVPLQRPDEMQVPSPSLMQTNSGYEDMFSEIGIPTMITWSYDGKEVAVEGS 118

Query: 112 WDNWKTRIALQRSGKDFTIMKVLPSGVYQYRFLVDGLWKYAPDLPSTQDDDGNVYNILDL 171
           WDNWKTR+ LQRSGKDFTIMKVLPSGVYQ+RF+VDG W+YAPDLP  +DD  N YNILDL
Sbjct: 119 WDNWKTRMPLQRSGKDFTIMKVLPSGVYQFRFIVDGQWRYAPDLPWARDDAANTYNILDL 178

Query: 172 QVNI 175
           Q ++
Sbjct: 179 QDSV 182

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356532768|ref|XP_003534943.1| PREDICTED: SNF1-related protein kinase regulatory subunit beta-2-like [Glycine max]

 Score =  233 bits (595), Expect = 3e-59,   Method: Compositional matrix adjust.
 Identities = 122/195 (62%), Positives = 138/195 (70%), Gaps = 23/195 (11%)

Query: 1   MGNVNAREDGSNSPSGVEEGES------------------NNSVQE-----EGIIVPDGL 37
           MGN N R+D + +PSG E  E                   ++SV +          P  L
Sbjct: 1   MGNANGRDDVNGTPSGTEGEEEEEEEEEEEEEEDDGEEGGSDSVTDCMSSNPSHHAPSEL 60

Query: 38  MGQSPPHSPRATHSPLMFTPQVPVVPLQRPDEMQIPNLSWMQTSSGYEDMGDGVGIPTMI 97
           MG SPP SPRAT SP MFTPQVPVVPLQ+PDEM  P+ SWMQT+S YEDM   +GIPTMI
Sbjct: 61  MGHSPPASPRATQSPFMFTPQVPVVPLQKPDEMHAPSPSWMQTTSVYEDMYCELGIPTMI 120

Query: 98  TWSHDGCEVAVEGSWDNWKTRIALQRSGKDFTIMKVLPSGVYQYRFLVDGLWKYAPDLPS 157
           TWS+DG EVAVEGSWDNWKTR+ LQRSGKDFTIMKVLPSGVYQ+RF+VDG W+YAPDLP 
Sbjct: 121 TWSYDGKEVAVEGSWDNWKTRMPLQRSGKDFTIMKVLPSGVYQFRFIVDGQWRYAPDLPW 180

Query: 158 TQDDDGNVYNILDLQ 172
            QDD GN YN+LDLQ
Sbjct: 181 AQDDSGNAYNVLDLQ 195

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224137216|ref|XP_002322502.1| predicted protein [Populus trichocarpa] gi|222867132|gb|EEF04263.1| predicted protein [Populus trichocarpa]

 Score =  231 bits (588), Expect = 2e-58,   Method: Compositional matrix adjust.
 Identities = 108/146 (73%), Positives = 124/146 (84%), Gaps = 3/146 (2%)

Query: 34  PDGLMGQSPPHSPRATHSPLMFTPQVPVVPLQRPDEMQIPNLSWMQTSSGYEDMGDGVGI 93
           P  +MG SPPHSPRATHSPLMFTPQ+PVVPLQRPDE+Q+P+ SWMQ S GYE+M +  GI
Sbjct: 15  PPEMMGHSPPHSPRATHSPLMFTPQLPVVPLQRPDEIQVPSHSWMQNSLGYEEMCNEQGI 74

Query: 94  PTMITWSHDGCEVAVEGSWDNWKTRIALQRSGKDFTIMKVLPSGVYQYRFLVDGLWKYAP 153
           PTMITW++ G EVAVEGSWD+WKTR+ LQRSGKD+TIMKVLPSGVYQYRF+VDG W+YAP
Sbjct: 75  PTMITWTYGGKEVAVEGSWDDWKTRMPLQRSGKDYTIMKVLPSGVYQYRFIVDGQWRYAP 134

Query: 154 DLPSTQDDDGNVYNILDLQVNITFIP 179
           DLP  +DD GN YN LDLQ    F+P
Sbjct: 135 DLPWAKDDSGNAYNTLDLQ---DFVP 157

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	210
TAIR|locus:2178963	320	AKINBETA1 "AT5G21170" [Arabido	0.557	0.365	0.512	9e-34
DICTYBASE|DDB_G0281089	347	prkab "AMP-activated protein k	0.380	0.230	0.437	1.1e-15
UNIPROTKB|E1B986	272	PRKAB2 "Uncharacterized protei	0.576	0.444	0.333	1.8e-14
UNIPROTKB|O43741	272	PRKAB2 "5'-AMP-activated prote	0.576	0.444	0.333	1.8e-14
UNIPROTKB|E2R145	272	PRKAB2 "Uncharacterized protei	0.576	0.444	0.333	2.3e-14
UNIPROTKB|F1SDB6	272	PRKAB2 "Uncharacterized protei	0.576	0.444	0.326	3.8e-14
POMBASE|SPCC1919.03c	298	amk2 "AMP-activated protein ki	0.4	0.281	0.4	4.4e-14
MGI|MGI:1336185	271	Prkab2 "protein kinase, AMP-ac	0.576	0.446	0.326	6.2e-14
RGD|620905	271	Prkab2 "protein kinase, AMP-ac	0.576	0.446	0.326	6.2e-14
UNIPROTKB|G3V9X3	271	Prkab2 "5'-AMP-activated prote	0.576	0.446	0.326	6.2e-14

TAIR|locus:2178963 AKINBETA1 "AT5G21170" [Arabidopsis thaliana (taxid:3702)]

 Score = 317 (116.6 bits), Expect = 9.0e-34, Sum P(2) = 9.0e-34
 Identities = 62/121 (51%), Positives = 83/121 (68%)

Query:    59 VPVVPLQRPDEMQIPNLSWMQTSSGYEDMGDGVGIPTMITWSHDGCEVAVEGSWDNWKTR 118
             VPV PLQR +     N+ W Q+   +++  +  GIPT+ITW+  G +VAVEGSWDNW++R
Sbjct:   104 VPVAPLQRANAPPPNNIQWNQSQRVFDNPPEQ-GIPTIITWNQGGNDVAVEGSWDNWRSR 162

Query:   119 IALQRSGKDFTIMKVLPSGVYQYRFLVDGLWKYAPDLPSTQDDDGNVYNILDLQVNITFI 178
               LQ+SGKD +I+ VLPSG+Y Y+ +VDG  KY PDLP   D+ GNV NILD+     F+
Sbjct:   163 KKLQKSGKDHSILFVLPSGIYHYKVIVDGESKYIPDLPFVADEVGNVCNILDVH---NFV 219

Query:   179 P 179
             P
Sbjct:   220 P 220

GO:0004679 "AMP-activated protein kinase activity" evidence=ISS

GO:0005737 "cytoplasm" evidence=ISM

GO:0005515 "protein binding" evidence=IPI

GO:0043562 "cellular response to nitrogen levels" evidence=IEP

GO:0009744 "response to sucrose stimulus" evidence=RCA

GO:0009750 "response to fructose stimulus" evidence=RCA

DICTYBASE|DDB_G0281089 prkab "AMP-activated protein kinase beta subunit" [Dictyostelium discoideum (taxid:44689)]

 Score = 200 (75.5 bits), Expect = 1.1e-15, P = 1.1e-15
 Identities = 35/80 (43%), Positives = 55/80 (68%)

Query:    93 IPTMITWSHDGCEVAVEGSWDNWKTRIALQRSGKDFTIMKVLPSGVYQYRFLVDGLWKYA 152
             +PT+ TWS  G +V V GS++NWK +I L RS KDFT++  L  GV+QY+++VDG W ++
Sbjct:   156 VPTVFTWSGGGKDVYVSGSFNNWKEKIPLSRSEKDFTLIYNLAPGVHQYKYIVDGKWIHS 215

Query:   153 PDLPSTQDDDGNVYNILDLQ 172
              + P   D  GN+ N ++++
Sbjct:   216 TEQPVAADIKGNLLNFIEVK 235

GO:0005575 "cellular_component" evidence=ND

UNIPROTKB|E1B986 PRKAB2 "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 185 (70.2 bits), Expect = 1.8e-14, P = 1.8e-14
 Identities = 46/138 (33%), Positives = 69/138 (50%)

Query:    44 HSPRATHSPLMFTPQVPVVPLQRPDEMQIPN----LSWMQTSSGYEDMGDGV-----GIP 94
             H+P   H  ++ +   P V    PD  ++P     +SW Q      D+ D V       P
Sbjct:    27 HAPGKEHKIMVGSTDDPSV-FSLPDS-KLPGDKEFVSWQQ------DLEDSVKPTQQARP 78

Query:    95 TMITWSHDGCEVAVEGSWDNWKTRIALQRSGKDFTIMKVLPSGVYQYRFLVDGLWKYAPD 154
             T+I WS  G EV + GS++NW T+I L +S  DF  +  LP G +QY+F VDG W + P 
Sbjct:    79 TVIRWSEGGKEVFISGSFNNWSTKIPLIKSHNDFVAILDLPEGEHQYKFFVDGQWVHDPS 138

Query:   155 LPSTQDDDGNVYNILDLQ 172
              P      G + N++ ++
Sbjct:   139 EPVVTSQLGTINNLIHVK 156

GO:0042802 "identical protein binding" evidence=IEA

GO:0031588 "AMP-activated protein kinase complex" evidence=IEA

GO:0004679 "AMP-activated protein kinase activity" evidence=IEA

UNIPROTKB|O43741 PRKAB2 "5'-AMP-activated protein kinase subunit beta-2" [Homo sapiens (taxid:9606)]

 Score = 185 (70.2 bits), Expect = 1.8e-14, P = 1.8e-14
 Identities = 46/138 (33%), Positives = 69/138 (50%)

Query:    44 HSPRATHSPLMFTPQVPVVPLQRPDEMQIPN----LSWMQTSSGYEDMGDGV-----GIP 94
             H+P   H  ++ +   P V    PD  ++P     +SW Q      D+ D V       P
Sbjct:    27 HAPGKEHKIMVGSTDDPSV-FSLPDS-KLPGDKEFVSWQQ------DLEDSVKPTQQARP 78

Query:    95 TMITWSHDGCEVAVEGSWDNWKTRIALQRSGKDFTIMKVLPSGVYQYRFLVDGLWKYAPD 154
             T+I WS  G EV + GS++NW T+I L +S  DF  +  LP G +QY+F VDG W + P 
Sbjct:    79 TVIRWSEGGKEVFISGSFNNWSTKIPLIKSHNDFVAILDLPEGEHQYKFFVDGQWVHDPS 138

Query:   155 LPSTQDDDGNVYNILDLQ 172
              P      G + N++ ++
Sbjct:   139 EPVVTSQLGTINNLIHVK 156

GO:0006633 "fatty acid biosynthetic process" evidence=IEA

GO:0031588 "AMP-activated protein kinase complex" evidence=IDA

GO:0004679 "AMP-activated protein kinase activity" evidence=IDA

GO:0007165 "signal transduction" evidence=TAS

GO:0005654 "nucleoplasm" evidence=TAS

GO:0005829 "cytosol" evidence=TAS

GO:0006112 "energy reserve metabolic process" evidence=TAS

GO:0006853 "carnitine shuttle" evidence=TAS

GO:0007050 "cell cycle arrest" evidence=TAS

GO:0008286 "insulin receptor signaling pathway" evidence=TAS

GO:0042304 "regulation of fatty acid biosynthetic process" evidence=TAS

GO:0044255 "cellular lipid metabolic process" evidence=TAS

GO:0044281 "small molecule metabolic process" evidence=TAS

GO:0046320 "regulation of fatty acid oxidation" evidence=TAS

GO:0005515 "protein binding" evidence=IPI

GO:0042802 "identical protein binding" evidence=IPI

UNIPROTKB|E2R145 PRKAB2 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 184 (69.8 bits), Expect = 2.3e-14, P = 2.3e-14
 Identities = 46/138 (33%), Positives = 69/138 (50%)

Query:    44 HSPRATHSPLMFTPQVPVVPLQRPDEMQIPN----LSWMQTSSGYEDMGDGV-----GIP 94
             H+P   H  ++ +   P V    PD  ++P     +SW Q      D+ D V       P
Sbjct:    27 HAPLKEHKIMVGSTDDPSV-FSLPDP-KLPGDKEFVSWQQ------DLEDSVKPTQQARP 78

Query:    95 TMITWSHDGCEVAVEGSWDNWKTRIALQRSGKDFTIMKVLPSGVYQYRFLVDGLWKYAPD 154
             T+I WS  G EV + GS++NW T+I L +S  DF  +  LP G +QY+F VDG W + P 
Sbjct:    79 TVIRWSEGGKEVFISGSFNNWSTKIPLIKSHNDFVAILDLPEGEHQYKFFVDGQWVHDPS 138

Query:   155 LPSTQDDDGNVYNILDLQ 172
              P      G + N++ ++
Sbjct:   139 EPVVTSQLGTINNLIHVK 156

GO:0042802 "identical protein binding" evidence=IEA

GO:0031588 "AMP-activated protein kinase complex" evidence=IEA

GO:0004679 "AMP-activated protein kinase activity" evidence=IEA

UNIPROTKB|F1SDB6 PRKAB2 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 182 (69.1 bits), Expect = 3.8e-14, P = 3.8e-14
 Identities = 45/138 (32%), Positives = 69/138 (50%)

Query:    44 HSPRATHSPLMFTPQVPVVPLQRPDEMQIPN----LSWMQTSSGYEDMGDGV-----GIP 94
             H+P   H  ++ +   P +    PD  ++P     +SW Q      D+ D V       P
Sbjct:    27 HAPGKEHKIMVGSTDDPSL-FSLPDS-KLPGDKEFVSWQQ------DLEDSVKPTQQARP 78

Query:    95 TMITWSHDGCEVAVEGSWDNWKTRIALQRSGKDFTIMKVLPSGVYQYRFLVDGLWKYAPD 154
             T+I WS  G EV + GS++NW T+I L +S  DF  +  LP G +QY+F VDG W + P 
Sbjct:    79 TVIRWSEGGKEVFISGSFNNWSTKIPLIKSHNDFVAILDLPEGEHQYKFFVDGQWVHDPS 138

Query:   155 LPSTQDDDGNVYNILDLQ 172
              P      G + N++ ++
Sbjct:   139 EPVVTSQLGTINNLIHVK 156

GO:0042802 "identical protein binding" evidence=IEA

GO:0031588 "AMP-activated protein kinase complex" evidence=IEA

GO:0004679 "AMP-activated protein kinase activity" evidence=IEA

POMBASE|SPCC1919.03c amk2 "AMP-activated protein kinase beta subunit Amk2" [Schizosaccharomyces pombe (taxid:4896)]

 Score = 183 (69.5 bits), Expect = 4.4e-14, P = 4.4e-14
 Identities = 34/85 (40%), Positives = 54/85 (63%)

Query:    90 GVGIPTMITWSHDGCEVAVEGSWDNWKTRIALQRSGKDFTIMKVLPSGVYQYRFLVDGLW 149
             G  +PT+I W   G  V V GS+  WK +I L +S +D+T++  L  G  +++FLVDG+W
Sbjct:    96 GPCVPTIIRWRGGGEVVYVTGSFSRWKKKIQLLKS-EDYTVLLQLRPGTQRFKFLVDGIW 154

Query:   150 KYAPDLPSTQDDDGNVYNILDLQVN 174
               + D P+  D +GN+YN L+++ N
Sbjct:   155 CCSSDFPTATDAEGNLYNYLEVEAN 179

GO:0001932 "regulation of protein phosphorylation" evidence=IC

GO:0005634 "nucleus" evidence=ISO

GO:0005737 "cytoplasm" evidence=IDA

GO:0005829 "cytosol" evidence=IDA

GO:0005886 "plasma membrane" evidence=ISO

GO:0007165 "signal transduction" evidence=ISO

GO:0019887 "protein kinase regulator activity" evidence=ISO

GO:0031588 "AMP-activated protein kinase complex" evidence=ISO

GO:0042149 "cellular response to glucose starvation" evidence=ISO

MGI|MGI:1336185 Prkab2 "protein kinase, AMP-activated, beta 2 non-catalytic subunit" [Mus musculus (taxid:10090)]

 Score = 180 (68.4 bits), Expect = 6.2e-14, P = 6.2e-14
 Identities = 45/138 (32%), Positives = 67/138 (48%)

Query:    44 HSPRATHSPLMFTPQVPVVPLQRPDEMQIPN----LSWMQTSSGYEDMGDGV-----GIP 94
             H P   H  ++ +   P V    PD  ++P     + W Q      D+ D V       P
Sbjct:    26 HGPGKEHKIMVGSTDDPSV-FSLPDS-KLPGDKEFVPWQQ------DLDDSVKPAQQARP 77

Query:    95 TMITWSHDGCEVAVEGSWDNWKTRIALQRSGKDFTIMKVLPSGVYQYRFLVDGLWKYAPD 154
             T+I WS  G EV + GS++NW T+I L +S  DF  +  LP G +QY+F VDG W + P 
Sbjct:    78 TVIRWSEGGKEVFISGSFNNWSTKIPLIKSHNDFVAILDLPEGEHQYKFFVDGQWVHDPS 137

Query:   155 LPSTQDDDGNVYNILDLQ 172
              P      G + N++ ++
Sbjct:   138 EPVVTSQLGTINNLIHVK 155

GO:0004679 "AMP-activated protein kinase activity" evidence=TAS

GO:0005737 "cytoplasm" evidence=ISO

GO:0005952 "cAMP-dependent protein kinase complex" evidence=ISO

GO:0006468 "protein phosphorylation" evidence=TAS

GO:0006629 "lipid metabolic process" evidence=IEA

GO:0006631 "fatty acid metabolic process" evidence=IEA

GO:0006633 "fatty acid biosynthetic process" evidence=IEA

GO:0006950 "response to stress" evidence=TAS

GO:0016324 "apical plasma membrane" evidence=ISO

GO:0019901 "protein kinase binding" evidence=ISO

GO:0031588 "AMP-activated protein kinase complex" evidence=ISO

GO:0042802 "identical protein binding" evidence=ISO

RGD|620905 Prkab2 "protein kinase, AMP-activated, beta 2 non-catalytic subunit" [Rattus norvegicus (taxid:10116)]

 Score = 180 (68.4 bits), Expect = 6.2e-14, P = 6.2e-14
 Identities = 45/138 (32%), Positives = 67/138 (48%)

Query:    44 HSPRATHSPLMFTPQVPVVPLQRPDEMQIPN----LSWMQTSSGYEDMGDGV-----GIP 94
             H P   H  ++ +   P V    PD  ++P     + W Q      D+ D V       P
Sbjct:    26 HGPGKEHKIMVGSTDDPSV-FSLPDS-KLPGDKEFVPWQQ------DLDDSVKPTQQARP 77

Query:    95 TMITWSHDGCEVAVEGSWDNWKTRIALQRSGKDFTIMKVLPSGVYQYRFLVDGLWKYAPD 154
             T+I WS  G EV + GS++NW T+I L +S  DF  +  LP G +QY+F VDG W + P 
Sbjct:    78 TVIRWSEGGKEVFISGSFNNWSTKIPLIKSHNDFVAILDLPEGEHQYKFFVDGQWVHDPS 137

Query:   155 LPSTQDDDGNVYNILDLQ 172
              P      G + N++ ++
Sbjct:   138 EPVVTSQLGTINNLIHVK 155

GO:0004679 "AMP-activated protein kinase activity" evidence=ISO;ISS

GO:0005654 "nucleoplasm" evidence=TAS

GO:0005737 "cytoplasm" evidence=IDA

GO:0005952 "cAMP-dependent protein kinase complex" evidence=IDA

GO:0006633 "fatty acid biosynthetic process" evidence=IEA

GO:0016324 "apical plasma membrane" evidence=IDA

GO:0019901 "protein kinase binding" evidence=IPI

GO:0031588 "AMP-activated protein kinase complex" evidence=ISO;IDA

GO:0042802 "identical protein binding" evidence=ISO

UNIPROTKB|G3V9X3 Prkab2 "5'-AMP-activated protein kinase subunit beta-2" [Rattus norvegicus (taxid:10116)]

 Score = 180 (68.4 bits), Expect = 6.2e-14, P = 6.2e-14
 Identities = 45/138 (32%), Positives = 67/138 (48%)

Query:    44 HSPRATHSPLMFTPQVPVVPLQRPDEMQIPN----LSWMQTSSGYEDMGDGV-----GIP 94
             H P   H  ++ +   P V    PD  ++P     + W Q      D+ D V       P
Sbjct:    26 HGPGKEHKIMVGSTDDPSV-FSLPDS-KLPGDKEFVPWQQ------DLDDSVKPTQQARP 77

Query:    95 TMITWSHDGCEVAVEGSWDNWKTRIALQRSGKDFTIMKVLPSGVYQYRFLVDGLWKYAPD 154
             T+I WS  G EV + GS++NW T+I L +S  DF  +  LP G +QY+F VDG W + P 
Sbjct:    78 TVIRWSEGGKEVFISGSFNNWSTKIPLIKSHNDFVAILDLPEGEHQYKFFVDGQWVHDPS 137

Query:   155 LPSTQDDDGNVYNILDLQ 172
              P      G + N++ ++
Sbjct:   138 EPVVTSQLGTINNLIHVK 155

GO:0004679 "AMP-activated protein kinase activity" evidence=IEA

GO:0031588 "AMP-activated protein kinase complex" evidence=IEA

GO:0042802 "identical protein binding" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: grail3.0024005201 hypothetical protein (293 aa) (Populus trichocarpa)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	210
cd02859	80	cd02859, E_set_AMPKbeta_like_N, N-terminal Early s	3e-26
cd11294	83	cd11294, E_set_Esterase_like_N, N-terminal Early s	1e-05
cd07184	86	cd07184, E_set_Isoamylase_like_N, N-terminal Early	2e-04

>gnl|CDD|199889 cd02859, E_set_AMPKbeta_like_N, N-terminal Early set domain, a glycogen binding domain, associated with the catalytic domain of AMP-activated protein kinase beta subunit

 Score = 96.1 bits (240), Expect = 3e-26
 Identities = 35/79 (44%), Positives = 50/79 (63%), Gaps = 2/79 (2%)

Query: 94  PTMITWSHDGC-EVAVEGSWDNWKTRIALQRSGK-DFTIMKVLPSGVYQYRFLVDGLWKY 151
           P    W   G  EV V GS+DNW+  I L++SG  +F+    LP G Y+Y+F+VDG W +
Sbjct: 1   PVTFRWPGPGGKEVYVTGSFDNWQQPIPLEKSGDGEFSATVELPPGRYEYKFIVDGEWVH 60

Query: 152 APDLPSTQDDDGNVYNILD 170
            PDLP+  D+ GN+ N+L+
Sbjct: 61  DPDLPTVTDEFGNLNNVLE 79

E or "early" set domains are associated with the catalytic domain of AMP-activated protein kinase beta subunit glycogen binding domain at the N-terminal end. AMPK is a metabolic stress sensing protein that senses AMP/ATP and has recently been found to act as a glycogen sensor as well. The protein functions as an alpha-beta-gamma heterotrimer. This N-terminal domain is the glycogen binding domain of the beta subunit. This domain is also a member of the CBM48 (Carbohydrate Binding Module 48) family whose members include pullulanase, maltooligosyl trehalose synthase, starch branching enzyme, glycogen branching enzyme, glycogen debranching enzyme, and isoamylase. Length = 80

>gnl|CDD|199894 cd11294, E_set_Esterase_like_N, N-terminal Early set domain associated with the catalytic domain of putative esterases

 Score = 42.2 bits (100), Expect = 1e-05
 Identities = 17/70 (24%), Positives = 28/70 (40%), Gaps = 6/70 (8%)

Query: 105 EVAVEGSWDNWKTRIALQRSGKD----FTIMKVLPSGVYQYRFLVDGLWKYAPDLPSTQD 160
           +V V G +      +A+ +   D     T    L   +Y Y F VDG+    P  P  + 
Sbjct: 14  KVEVTGDFLPGPGPVAMTK-DDDGVWSVTT-GPLAPEIYSYSFNVDGVKVLDPSNPYVKR 71

Query: 161 DDGNVYNILD 170
           D   V ++ +
Sbjct: 72  DVSTVSSVFE 81

E or "early" set domains are associated with the catalytic domain of esterase at the N-terminal end. Esterases catalyze the hydrolysis of organic esters to release an alcohol or thiol and acid. The term esterase can be applied to enzymes that hydrolyze carboxylate, phosphate and sulphate esters, but is more often restricted to the first class of substrate. The N-terminal domain of esterase may be related to the immunoglobulin and/or fibronectin type III superfamilies. These domains are associated with different types of catalytic domains at either the N-terminal or C-terminal end and may be involved in homodimeric/tetrameric/dodecameric interactions. Members of this family include members of the alpha amylase family, sialidase, galactose oxidase, cellulase, cellulose, hyaluronate lyase, chitobiase, and chitinase, among others. Length = 83

>gnl|CDD|199892 cd07184, E_set_Isoamylase_like_N, N-terminal Early set domain associated with the catalytic domain of isoamylase-like (also called glycogen 6-glucanohydrolase) proteins

 Score = 38.8 bits (91), Expect = 2e-04
 Identities = 15/47 (31%), Positives = 28/47 (59%), Gaps = 5/47 (10%)

Query: 105 EVAVEGSWDNW---KTRIALQRSGKDFTIMKVLPSGV-YQYRFLVDG 147
            V++ G +++W    T +   ++G  F+    LP+G  YQ+R+L+DG
Sbjct: 15  SVSLVGDFNDWDPQATPMKKLKNG-TFSATLDLPAGREYQFRYLIDG 60

E or "early" set domains are associated with the catalytic domain of isoamylase-like proteins at the N-terminal end. Isoamylase is one of the starch-debranching enzymes that catalyze the hydrolysis of alpha-1,6-glucosidic linkages specific in alpha-glucans such as amylopectin or glycogen. Isoamylase contains a bound calcium ion, but this is not in the same position as the conserved calcium ion that has been reported in other alpha-amylase family enzymes. The N-terminal domain of isoamylase may be related to the immunoglobulin and/or fibronectin type III superfamilies. These domains are associated with different types of catalytic domains at either the N-terminal or C-terminal end and may be involved in homodimeric/tetrameric/dodecameric interactions. Members of this family include members of the alpha amylase family, sialidase, galactose oxidase, cellulase, cellulose, hyaluronate lyase, chitobiase, and chitinase. This domain is also a member of the CBM48 (Carbohydrate Binding Module 48) family whose members include pullulanase, maltooligosyl trehalose synthase, starch branching enzyme, glycogen branching enzyme, glycogen debranching enzyme, and the beta subunit of AMP-activated protein kinase. Length = 86

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	210
cd02859	79	AMPKbeta_GBD_like AMP-activated protein kinase (AM	99.94
KOG1616	289	consensus Protein involved in Snf1 protein kinase	99.88
cd02861	82	E_set_proteins_like E or "early" set-like proteins	99.81
cd02858	85	Esterase_N_term Esterase N-terminal domain. Estera	99.32
cd02688	83	E_set E or "early" set of sugar utilizing enzymes	98.88
PF02922	85	CBM_48: Carbohydrate-binding module 48 (Isoamylase	98.65
cd02854	99	Glycogen_branching_enzyme_like_N_term Glycogen bra	98.59
PF00686	96	CBM_20: Starch binding domain; InterPro: IPR002044	97.87
cd02855	106	Glycogen_branching_enzyme_N_term Glycogen branchin	97.85
cd02860	100	Pullulanase_N_term Pullulanase domain N-terminus.	97.81
cd05808	95	CBM20_alpha_amylase Alpha-amylase, C-terminal CBM2	97.78
COG0296	628	GlgB 1,4-alpha-glucan branching enzyme [Carbohydra	97.69
cd05818	92	CBM20_water_dikinase Phosphoglucan water dikinase	97.55
cd02856	103	Glycogen_debranching_enzyme_N_term Glycogen_debran	97.54
PRK12313	633	glycogen branching enzyme; Provisional	97.48
cd05820	103	CBM20_novamyl Novamyl (also known as acarviose tra	97.46
PRK12568	730	glycogen branching enzyme; Provisional	97.44
cd05809	99	CBM20_beta_amylase Beta-amylase, C-terminal CBM20	97.4
cd05814	120	CBM20_Prei4 Prei4, N-terminal CBM20 (carbohydrate-	97.37
PLN02447	758	1,4-alpha-glucan-branching enzyme	97.33
cd05811	106	CBM20_glucoamylase Glucoamylase (glucan1,4-alpha-g	97.29
PRK14705	1224	glycogen branching enzyme; Provisional	97.21
PRK05402	726	glycogen branching enzyme; Provisional	97.13
PRK14706	639	glycogen branching enzyme; Provisional	97.12
cd02852	119	Isoamylase_N_term Isoamylase N-terminus domain. Is	97.05
cd05813	95	CBM20_genethonin_1 Genethonin-1, C-terminal CBM20	96.99
TIGR02402	542	trehalose_TreZ malto-oligosyltrehalose trehalohydr	96.9
cd05807	101	CBM20_CGTase CGTase, C-terminal CBM20 (carbohydrat	96.84
cd05816	99	CBM20_DPE2_repeat2 Disproportionating enzyme 2 (DP	96.84
cd02853	85	MTHase_N_term Maltooligosyl trehalose synthase (MT	96.75
cd05817	100	CBM20_DSP Dual-specificity phosphatase (DSP), N-te	96.74
TIGR01515	613	branching_enzym alpha-1,4-glucan:alpha-1,4-glucan	96.73
cd05467	96	CBM20 The family 20 carbohydrate-binding module (C	96.64
cd05810	97	CBM20_alpha_MTH Glucan 1,4-alpha-maltotetraohydrol	96.52
PRK05402	726	glycogen branching enzyme; Provisional	96.33
PF11806	122	DUF3327: Domain of unknown function (DUF3327); Int	95.78
PF03423	87	CBM_25: Carbohydrate binding domain (family 25); I	95.54
TIGR02104	605	pulA_typeI pullulanase, type I. Pullulan is an unu	95.47
cd05815	101	CBM20_DPE2_repeat1 Disproportionating enzyme 2 (DP	95.19
PLN02960	897	alpha-amylase	94.4
cd05806	112	CBM20_laforin Laforin protein tyrosine phosphatase	94.31
PRK10439	411	enterobactin/ferric enterobactin esterase; Provisi	93.82
PLN02950	909	4-alpha-glucanotransferase	92.97
TIGR02100	688	glgX_debranch glycogen debranching enzyme GlgX. Th	92.94
TIGR02102	1111	pullulan_Gpos pullulanase, extracellular, Gram-pos	92.58
PLN02950	909	4-alpha-glucanotransferase	92.1
PLN02316	1036	synthase/transferase	91.57
cd02857	116	CD_pullulan_degrading_enzymes_N_term CD and pullul	91.33
TIGR02103	898	pullul_strch alpha-1,6-glucosidases, pullulanase-t	91.19
PRK03705	658	glycogen debranching enzyme; Provisional	90.87
PLN02316	1036	synthase/transferase	89.97
PF02903	120	Alpha-amylase_N: Alpha amylase, N-terminal ig-like	88.47
PRK14510	1221	putative bifunctional 4-alpha-glucanotransferase/g	84.84
PF01357	82	Pollen_allerg_1: Pollen allergen; InterPro: IPR007	84.65
PLN02877	970	alpha-amylase/limit dextrinase	83.36

>cd02859 AMPKbeta_GBD_like AMP-activated protein kinase (AMPK) beta subunit glycogen binding domain (GBD)

Probab=99.94  E-value=1.8e-26  Score=169.89  Aligned_cols=79  Identities=52%  Similarity=1.028  Sum_probs=75.1

Q ss_pred             ceeEEEEEcCCCCeEEEEeecCCCccceeeeeeCCcEEEEEEcCCceEEEEEEEcCeeecCCCCCeeeCCCCCeeEEEE
Q 028378           92 GIPTMITWSHDGCEVAVEGSWDNWKTRIALQRSGKDFTIMKVLPSGVYQYRFLVDGLWKYAPDLPSTQDDDGNVYNILD  170 (210)
Q Consensus        92 ~vpv~F~w~~~g~~V~V~GSFdnW~~~ipM~rs~~~f~i~l~Lp~G~YqYKFiVDG~W~~Dp~~P~~~D~~G~~NNvI~  170 (210)
                      .++|+|+|..++++|+|+|||++|+..++|+|+++.|++++.||+|.|+|||+|||+|++||+++++.|++|+.||+|+
T Consensus         1 ~~~v~f~~~~~a~~V~v~G~F~~W~~~~pm~~~~~~~~~~~~L~~g~y~YkF~Vdg~w~~d~~~~~~~d~~G~~NN~i~   79 (79)
T cd02859           1 MVPTTFVWPGGGKEVYVTGSFDNWKKKIPLEKSGKGFSATLRLPPGKYQYKFIVDGEWRHSPDLPTETDDEGNVNNVID   79 (79)
T ss_pred             CeEEEEEEcCCCcEEEEEEEcCCCCccccceECCCCcEEEEEcCCCCEEEEEEECCEEEeCCCCCccCCCCCcEeeeEC
Confidence            3789999999999999999999999779999987779999999999999999999999999999999999999999984

AMPK is a metabolic stress sensing protein that senses AMP/ATP and has recently been found to act as a glycogen sensor as well. The protein functions as a alpha-beta-gamma heterotrimer. This domain is the glycogen binding domain of the beta subunit.

>KOG1616 consensus Protein involved in Snf1 protein kinase complex assembly [Carbohydrate transport and metabolism]

Probab=99.88  E-value=3.1e-22  Score=179.37  Aligned_cols=139  Identities=41%  Similarity=0.697  Sum_probs=115.8

Q ss_pred             CCCCCCCCCCCCCCCCCccCCCCcccccCCCCCCCCCCcccccCCC-CCCCCCCCCceeEEEEEcCCCCeEEEEeecCCC
Q 028378           37 LMGQSPPHSPRATHSPLMFTPQVPVVPLQRPDEMQIPNLSWMQTSS-GYEDMGDGVGIPTMITWSHDGCEVAVEGSWDNW  115 (210)
Q Consensus        37 ~~~~~~p~sp~~~~~p~~f~pq~p~~pl~r~~~~~~~~~~~~~~~~-~~~~~~~~~~vpv~F~w~~~g~~V~V~GSFdnW  115 (210)
                      .++...+...+.-....+|.|+.+..++.|+.........|.+... ..........+||+|+|.++++.|+|+|+|+||
T Consensus        23 ~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~pvvi~W~~gg~~v~v~gS~~nW  102 (289)
T KOG1616|consen   23 SNGSHKPGSERKIPSNSGFSPDDPDPPSTRDEKERIDEGSWSQSQTGEDNEKDREQGRPTVIRWSQGGKEVYVDGSFGNW  102 (289)
T ss_pred             hcCCCCCCCccccccccccCCcCCCCCcCcccccccccccccccccccccccccccCCceEEEecCCCceEEEecccccc
Confidence            3334444444443344488999999999988777777777776542 234445577899999999999999999999999


Q ss_pred             ccceeeeeeCCc---EEEEEEcCCceEEEEEEEcCeeecCCCCCeeeCCCCCeeEEEEcCCCc
Q 028378          116 KTRIALQRSGKD---FTIMKVLPSGVYQYRFLVDGLWKYAPDLPSTQDDDGNVYNILDLQVNI  175 (210)
Q Consensus       116 ~~~ipM~rs~~~---f~i~l~Lp~G~YqYKFiVDG~W~~Dp~~P~~~D~~G~~NNvI~V~d~v  175 (210)
                      +.+++|.+..+.   |+++++|++|.|+|||+|||+|++|++.|++.|..|+.||+|.|.+..
T Consensus       103 k~~~~l~~~~~~~~~f~~~~dL~~g~~~~kf~vdge~~~s~~~pta~d~~Gn~~N~i~v~~~~  165 (289)
T KOG1616|consen  103 KTKIPLVRSGKNVGGFSTILDLPPGEHEYKFIVDGEWRHDPDLPTAEDSLGNLNNILEVQDPD  165 (289)
T ss_pred             cccccceecCCCcccceeeEecCCceEEEEEecCCceecCCCCcccccccCCcccceEecCcc
Confidence            999999998765   999999999999999999999999999999999999999999999877

>cd02861 E_set_proteins_like E or "early" set-like proteins

Probab=99.81  E-value=1.6e-19  Score=132.87  Aligned_cols=76  Identities=28%  Similarity=0.645  Sum_probs=68.5

Q ss_pred             eeEEEEEcC-CCCeEEEEeecCCCccceeeeeeC-CcEEEEEEcCCceEEEEEEEcCeee-cCCCCC-eeeCCCCCeeEE
Q 028378           93 IPTMITWSH-DGCEVAVEGSWDNWKTRIALQRSG-KDFTIMKVLPSGVYQYRFLVDGLWK-YAPDLP-STQDDDGNVYNI  168 (210)
Q Consensus        93 vpv~F~w~~-~g~~V~V~GSFdnW~~~ipM~rs~-~~f~i~l~Lp~G~YqYKFiVDG~W~-~Dp~~P-~~~D~~G~~NNv  168 (210)
                      ++++|+|.. .+++|+|+|+|++|+ .++|+|.+ +.|++++.|++|.|+|||+|||.|. .||.++ +..|..|+.|||
T Consensus         2 ~~vtf~~~ap~a~~V~v~G~fn~W~-~~~m~~~~~G~w~~~~~l~~G~y~Ykf~vdg~~~~~DP~~~~~~~~~~g~~n~v   80 (82)
T cd02861           2 VPVVFAYRGPEADSVYLAGSFNNWN-AIPMEREGDGLWVVTVELRPGRYEYKFVVDGEWVIVDPNAAAYVDDGFGGKNAV   80 (82)
T ss_pred             ccEEEEEECCCCCEEEEEeECCCCC-cccCEECCCCcEEEEEeCCCCcEEEEEEECCEEeeCCCCCCceecCCCCccceE
Confidence            579999875 569999999999998 58999976 6899999999999999999999998 999998 578889999998


Q ss_pred             E
Q 028378          169 L  169 (210)
Q Consensus       169 I  169 (210)
                      |
T Consensus        81 ~   81 (82)
T cd02861          81 F   81 (82)
T ss_pred             c
Confidence            7

These alpha amylase-like sugar utilizing enzymes which may be related to the immunoglobulin and/or fibronectin type III superfamilies are associated with different types of catalytic domains at either the N-terminal or C-terminal end. Members of this family include members of the alpha amylase family, sialidase, galactose oxidase, cellulase, cellulose, hyaluronate lyase, chitobiase, and chitinase.

>cd02858 Esterase_N_term Esterase N-terminal domain

Probab=99.32  E-value=1.4e-11  Score=91.51  Aligned_cols=75  Identities=24%  Similarity=0.444  Sum_probs=61.2

Q ss_pred             eEEEE-EcCCCCeEEEEeecCCCccceeeeeeC-CcEEEEE-EcCCceEEEEEEEcCeeecCCCCCeeeCCCCCeeEEE
Q 028378           94 PTMIT-WSHDGCEVAVEGSWDNWKTRIALQRSG-KDFTIMK-VLPSGVYQYRFLVDGLWKYAPDLPSTQDDDGNVYNIL  169 (210)
Q Consensus        94 pv~F~-w~~~g~~V~V~GSFdnW~~~ipM~rs~-~~f~i~l-~Lp~G~YqYKFiVDG~W~~Dp~~P~~~D~~G~~NNvI  169 (210)
                      .++|+ |.+.+++|.|.|+|++|.. .+|+|.+ +.|++++ .|.+|.|+|+|+|||.++.||..+...-..+...|++
T Consensus         7 ~v~F~vwAP~A~~V~L~~~~~~~~~-~~m~~~~~G~W~~~v~~l~~g~Y~Y~~~vdg~~~~DP~s~~~~~~~~~~~~~~   84 (85)
T cd02858           7 TVTFRLFAPKANEVQVRGSWGGAGS-HPMTKDEAGVWSVTTGPLAPGIYTYSFLVDGVRVIDPSNPTTKPGRQVDTSGV   84 (85)
T ss_pred             cEEEEEECCCCCEEEEEeecCCCcc-EeCeECCCeEEEEEECCCCCcEEEEEEEECCeEecCCCCCceeecccccceee
Confidence            47885 8899999999999998874 8899865 5899988 4788899999999999999999996654444444443

Esterases catalyze the hydrolysis of organic esters to release an alcohol or thiol and acid. The term can be applied to enzymes that hydrolyze carboxylate, phosphate and sulphate esters, but is more often restricted to the first class of substrate. The N-terminus of esterase may be related to the immunoglobulin and/or fibronectin type III superfamilies. These domains are associated with different types of catalytic domains at either the N-terminal or C-terminal end and may be involved in homodimeric/tetrameric/dodecameric interactions. Members of this family include members of the alpha amylase family, sialidase, galactose oxidase, cellulase, cellulose, hyaluronate lyase, chitobiase, and chitinase.

>cd02688 E_set E or "early" set of sugar utilizing enzymes which may be related to the immunoglobulin and/or fibronectin type III superfamilies

Probab=98.88  E-value=1.2e-08  Score=72.13  Aligned_cols=67  Identities=22%  Similarity=0.364  Sum_probs=55.9

Q ss_pred             eEEEE-EcCCCCeEEEEeecCCCccceeeeeeC-CcEEEEEEcCC-ceEEEEEEEcCeeecCCCCCeeeC
Q 028378           94 PTMIT-WSHDGCEVAVEGSWDNWKTRIALQRSG-KDFTIMKVLPS-GVYQYRFLVDGLWKYAPDLPSTQD  160 (210)
Q Consensus        94 pv~F~-w~~~g~~V~V~GSFdnW~~~ipM~rs~-~~f~i~l~Lp~-G~YqYKFiVDG~W~~Dp~~P~~~D  160 (210)
                      .|+|+ |.+.+++|.|.++|++|...++|.+.. +.|++.+.+.. +.|.|||+|||.|..++.++...+
T Consensus         5 ~v~f~v~ap~a~~v~l~~~~~~~~~~~~~~~~~~g~w~~~v~~~~~~~~~Y~~~v~~~~~~~~~~~~~~~   74 (83)
T cd02688           5 GVTFTVRGPKAQRVSLAGSFNGDTQLIPMTKVEDGYWEVELPLPSPGKYQYKYVLDGGKGPDEGEPKADE   74 (83)
T ss_pred             cEEEEEECCCCCEEEEEEEECCCCCcccCEECCCceEEEEEcCCCCCCeEEEEEEeCCCCCCCCChhhhc
Confidence            47886 557889999999999966678998865 68999999887 999999999999999887754443

These domains are associated with different types of catalytic domains at either the N-terminal or C-terminal end. Members of this family include members of the alpha amylase family, sialidase, galactose oxidase, cellulase, cellulose, hyaluronate lyase, chitobiase, and chitinase.

>PF02922 CBM_48: Carbohydrate-binding module 48 (Isoamylase N-terminal domain); InterPro: IPR004193 O-Glycosyl hydrolases 3

Probab=98.65  E-value=7.9e-08  Score=69.77  Aligned_cols=56  Identities=20%  Similarity=0.459  Sum_probs=44.4

Q ss_pred             eEEEE-EcCCCCeEEEEeecCC-Ccc-ceeeee--eCCcEEEEEE--cCCceEEEEEEEcCee
Q 028378           94 PTMIT-WSHDGCEVAVEGSWDN-WKT-RIALQR--SGKDFTIMKV--LPSGVYQYRFLVDGLW  149 (210)
Q Consensus        94 pv~F~-w~~~g~~V~V~GSFdn-W~~-~ipM~r--s~~~f~i~l~--Lp~G~YqYKFiVDG~W  149 (210)
                      -++|+ |.+.+++|.|.+.|++ |.. .++|++  .++.|++++.  |++|.++|+|+||+..
T Consensus        12 ~~~F~vwaP~A~~V~l~~~~~~~~~~~~~~m~~~~~~G~w~~~~~~~~~~g~~~Y~y~i~~~~   74 (85)
T PF02922_consen   12 GVTFRVWAPNAKSVELVLYFNGSWPAEEYPMTRKDDDGVWEVTVPGDLPPGGYYYKYRIDGDD   74 (85)
T ss_dssp             EEEEEEE-TTESEEEEEEETTTSSEEEEEEEEEECTTTEEEEEEEGCGTTTT-EEEEEEEETT
T ss_pred             EEEEEEECCCCCEEEEEEEeeecCCCceEEeeecCCCCEEEEEEcCCcCCCCEEEEEEEEeCC
Confidence            57785 8999999999999999 875 479994  3568999998  8888888888887553

2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Enzymes containing this domain belong to family 13 (GH13 from CAZY) of the glycosyl hydrolases. This domain is found in a range of enzymes that act on branched substrates ie. isoamylase, pullulanase and branching enzyme. Isoamylase hydrolyses 1,6-alpha-D-glucosidic branch linkages in glycogen, amylopectin and dextrin; 1,4-alpha-glucan branching enzyme functions in the formation of 1,6-glucosidic linkages of glycogen; and pullulanase is a starch-debranching enzyme.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 2BHZ_A 2BY2_A 2BY3_A 2BXY_A 2BY1_A 2BHY_A 2BHU_A 2BXZ_A 2BY0_A 2FHB_A ....

>cd02854 Glycogen_branching_enzyme_like_N_term Glycogen branching enzyme-like N-terminus domain

Probab=98.59  E-value=3.1e-07  Score=70.54  Aligned_cols=65  Identities=20%  Similarity=0.433  Sum_probs=49.5

Q ss_pred             eEEEE-EcCCCCeEEEEeecCCCcc-ceeeeeeC-CcEEEEEEc--------CCc-eEEEEEEE-cCee--ecCCCCCee
Q 028378           94 PTMIT-WSHDGCEVAVEGSWDNWKT-RIALQRSG-KDFTIMKVL--------PSG-VYQYRFLV-DGLW--KYAPDLPST  158 (210)
Q Consensus        94 pv~F~-w~~~g~~V~V~GSFdnW~~-~ipM~rs~-~~f~i~l~L--------p~G-~YqYKFiV-DG~W--~~Dp~~P~~  158 (210)
                      -++|+ |.+.|++|+|+|+||+|+. ..+|.|.+ +.|++.+..        +.| .|.|++.. ||+|  +.||-.-.+
T Consensus         6 g~~FrvwAP~A~~V~l~GdFn~W~~~~~~m~k~~~G~W~~~i~~~~~~~~~~~~g~~Yky~i~~~~G~~~~~~DPyA~~~   85 (99)
T cd02854           6 GVTYREWAPNAEEVYLIGDFNNWDRNAHPLKKDEFGVWEITIPPNEDGSPAIPHGSKIKVRMVTPSGEWIDRIPAWIKYV   85 (99)
T ss_pred             eEEEEEECCCCCEEEEEccCCCCCCcCcccEECCCCEEEEEECCcccccccCCCCCEEEEEEEeCCCCEEEEcCcceeEE
Confidence            36784 8999999999999999986 47899864 689998764        455 56666666 7885  567766544

Glycogen branching enzyme (AKA 1,4 alpha glucan branching enzyme) catalyzes the formation of alpha-1,6 branch points in either glycogen or starch by cleavage of the alpha-1,4 glucosidic linkage yielding a non-reducing end oligosaccharide chain and subsequent attachment to the alpha-1,6 position. By increasing the number of non-reducing ends glycogen is more reactive to synthesis and digestion as well as being more soluble. The N-terminus of the glycogen branching enzyme-like proteins may be related to the immunoglobulin and/or fibronectin type III superfamilies. These domains are associated with different types of catalytic domains at either the N-terminal or C-terminal end and may be involved in homodimeric/tetrameric/dodecameric interactions. Members of this family include members of the alpha amylase family, sialidase, galactose oxidase, cellulase, cellulose, hyaluronate lyase, chitobi

>PF00686 CBM_20: Starch binding domain; InterPro: IPR002044 O-Glycosyl hydrolases 3

Probab=97.87  E-value=5.7e-05  Score=56.69  Aligned_cols=53  Identities=23%  Similarity=0.516  Sum_probs=44.1

Q ss_pred             eeEEEEEc---CCCCeEEEEeecC---CCcc--ceeeeeeC-----CcEEEEEEcCCc-eEEEEEEE
Q 028378           93 IPTMITWS---HDGCEVAVEGSWD---NWKT--RIALQRSG-----KDFTIMKVLPSG-VYQYRFLV  145 (210)
Q Consensus        93 vpv~F~w~---~~g~~V~V~GSFd---nW~~--~ipM~rs~-----~~f~i~l~Lp~G-~YqYKFiV  145 (210)
                      +.|+|...   ..++.|+|+||..   +|+.  .++|+...     ..|++.+.||.+ .++|||+|
T Consensus         2 v~V~F~v~~~~~~ge~v~i~Gs~~~LG~W~~~~a~~l~~~~~~~~~~~W~~~v~lp~~~~~eYKy~i   68 (96)
T PF00686_consen    2 VSVTFRVNYQTQPGESVYIVGSCPELGNWDPKKAVPLQWNEGTENYPIWSATVDLPAGTPFEYKYVI   68 (96)
T ss_dssp             EEEEEEESE---TTEEEEEEESSGGGTTTSGGGSBESEBESSSSTTTSEEEEEEEETTSEEEEEEEE
T ss_pred             EEEEEEEEeECCCCCEEEEEECcHHhCCCChHhccccccccCCCCCCeEEEEEECcCCCEEEEEEEE
Confidence            67888775   4789999999997   7997  57898753     479999999988 79999999

2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This domain binds to starch, and is found often at the C terminus of a variety of glycosyl hydrolases acting on polysaccharides more rapidly than on oligosaccharides. Reations include: the hydrolysis of terminal 1,4-linked alpha-D-glucose residues successively from non-reducing ends of the chains with release of beta-D-glucose, the degradation of starch to cyclodextrins by formation of a 1,4-alpha-D-glucosidic bond, and hydrolysis of 1,4-alpha-glucosidic linkages in polysaccharides to remove successive maltose units from the non-reducing ends of the chains.; GO: 0003824 catalytic activity, 0005975 carbohydrate metabolic process; PDB: 1KUL_A 1ACZ_A 1AC0_A 1KUM_A 2Z0B_C 9CGT_A 3CGT_A 6CGT_A 4CGT_A 1CGT_A ....

>cd02855 Glycogen_branching_enzyme_N_term Glycogen branching enzyme N-terminus domain

Probab=97.85  E-value=0.00019  Score=53.61  Aligned_cols=65  Identities=23%  Similarity=0.491  Sum_probs=44.3

Q ss_pred             EEEE-EcCCCCeEEEEeecCCCcc-ceeeeee--CCcEEEEEE-cCCc-eEEEEEEEc-Ce--eecCCCCCeee
Q 028378           95 TMIT-WSHDGCEVAVEGSWDNWKT-RIALQRS--GKDFTIMKV-LPSG-VYQYRFLVD-GL--WKYAPDLPSTQ  159 (210)
Q Consensus        95 v~F~-w~~~g~~V~V~GSFdnW~~-~ipM~rs--~~~f~i~l~-Lp~G-~YqYKFiVD-G~--W~~Dp~~P~~~  159 (210)
                      ++|+ |.+.+++|.|.++|++|.. ..+|++.  .+.|.+.+. ++.| .|+|++..+ |.  .+.||....+.
T Consensus        23 ~~frv~aP~A~~V~l~~~~~~~~~~~~~m~~~~~~G~w~~~v~~~~~~~~Y~~~v~~~~g~~~~~~DPYa~~~~   96 (106)
T cd02855          23 VRFAVWAPNARRVSVVGDFNGWDGRRHPMRRRGDSGVWELFIPGLGEGELYKYEILGADGHLPLKADPYAFYSE   96 (106)
T ss_pred             EEEEEECCCCCEEEEEEECCCCCCcceecEECCCCCEEEEEECCCCCCCEEEEEEECCCCCEEEeeCCCceeeE
Confidence            5674 8899999999999999964 4689874  457998775 5566 455554444 33  35566554333

Glycogen branching enzyme (AKA 1,4 alpha glucan branching enzyme) catalyzes the formation of alpha-1,6 branch points in either glycogen or starch by cleavage of the alpha-1,4 glucosidic linkage yielding a non-reducing end oligosaccharide chain and subsequent attachment to the alpha-1,6 position. By increasing the number of non-reducing ends glycogen is more reactive to synthesis and digestion as well as being more soluble. The N-terminus of the 1,4 alpha glucan branching enzyme may be related to the immunoglobulin and/or fibronectin type III superfamilies. These domains are associated with different types of catalytic domains at either the N-terminal or C-terminal end and may be involved in homodimeric/tetrameric/dodecameric interactions. Members of this family include members of the alpha amylase family, sialidase, galactose oxidase, cellulase, cellulose, hyaluronate lyase, chitobiase, and chitina

>cd02860 Pullulanase_N_term Pullulanase domain N-terminus

Probab=97.81  E-value=0.0001  Score=55.62  Aligned_cols=63  Identities=16%  Similarity=0.208  Sum_probs=48.4

Q ss_pred             EEE-EEcCCCCeEEEEeecCCCc-----cceeeeee-CCcEEEEEE-cCCceEEEEEEEcCe-----eecCCCCCeee
Q 028378           95 TMI-TWSHDGCEVAVEGSWDNWK-----TRIALQRS-GKDFTIMKV-LPSGVYQYRFLVDGL-----WKYAPDLPSTQ  159 (210)
Q Consensus        95 v~F-~w~~~g~~V~V~GSFdnW~-----~~ipM~rs-~~~f~i~l~-Lp~G~YqYKFiVDG~-----W~~Dp~~P~~~  159 (210)
                      ++| .|.+.+++|.|.. |++|.     .+++|++. ++.|++.+. +.+|.+ |+|.|+|.     .+.||-...+.
T Consensus        10 ~~F~vwAP~A~~V~L~l-~~~~~~~~~~~~~~m~~~~~gvw~~~v~~~~~g~~-Y~y~i~~~~~~~~~~~DPyA~~~~   85 (100)
T cd02860          10 TTFRLWAPTAQSVKLLL-YDKDDQDKVLETVQMKRGENGVWSVTLDGDLEGYY-YLYEVKVYKGETNEVVDPYAKALS   85 (100)
T ss_pred             EEEEEECCCCcEEEEEE-EcCCCCCCcceeEeeecCCCCEEEEEeCCccCCcE-EEEEEEEeceEEEEEcCcccEeEe
Confidence            678 5899999999998 88886     45789884 568999886 455654 88888775     78888776554

Pullulanase (AKA dextrinase; alpha-dextrin endo-1,6-alpha glucosidase) is an enzyme with action similar to that of isoamylase; it cleaves 1,6-alpha-glucosidic linkages in pullulan, amylopectin, and glycogen, and in alpha-and beta-amylase limit-dextrins of amylopectin and glycogen. The N-terminus of pullulanase may be related to the immunoglobulin and/or fibronectin type III superfamilies. These domains are associated with different types of catalytic domains at either the N-terminal or C-terminal end and may be involved in homodimeric/tetrameric/dodecameric interactions. Members of this family include members of the alpha amylase family, sialidase, galactose oxidase, cellulase, cellulose, hyaluronate lyase, chitobiase, and chitinase.

>cd05808 CBM20_alpha_amylase Alpha-amylase, C-terminal CBM20 (carbohydrate-binding module, family 20) domain

Probab=97.78  E-value=8.5e-05  Score=55.15  Aligned_cols=53  Identities=23%  Similarity=0.419  Sum_probs=41.9

Q ss_pred             eeEEEEEc---CCCCeEEEEee---cCCCccc--eeeeeeC-CcEEEEEEcCCc-eEEEEEEE
Q 028378           93 IPTMITWS---HDGCEVAVEGS---WDNWKTR--IALQRSG-KDFTIMKVLPSG-VYQYRFLV  145 (210)
Q Consensus        93 vpv~F~w~---~~g~~V~V~GS---FdnW~~~--ipM~rs~-~~f~i~l~Lp~G-~YqYKFiV  145 (210)
                      |+|+|...   ..|++|+|+|+   +.+|+..  ++|.... +.|++.+.||.+ .++|||++
T Consensus         1 v~v~F~v~~~t~~ge~l~v~G~~~~lG~W~~~~a~~l~~~~~~~W~~~v~l~~~~~~eYKy~~   63 (95)
T cd05808           1 VAVTFNVTATTVWGQNVYVVGNVPELGNWSPANAVALSAATYPVWSGTVDLPAGTAIEYKYIK   63 (95)
T ss_pred             CeEEEEEEEECCCCCEEEEEeCcHHhCCCChhhCccCCCCCCCCEEEEEEeCCCCeEEEEEEE
Confidence            45677654   36899999995   7899863  5887654 579999999987 79999997

This domain is found in several bacterial and fungal alpha-amylases including the maltopentaose-forming amylases (G5-amylases). Most alpha-amylases have, in addition to the C-terminal CBM20 domain, an N-terminal catalytic domain belonging to glycosyl hydrolase family 13, which hydrolyzes internal alpha-1,4-glucosidic bonds in starch and related saccharides, yielding maltotriose and maltose. Two types of soluble substrates are used by alpha-amylases including long substrates (e.g. amylose) and short substrates (e.g. maltodextrins or maltooligosaccharides). The CBM20 domain is found in a large number of starch degrading enzymes including alpha-amylase, beta-amylase, glucoamylase, and CGTase (cyclodextrin glucanotransferase). CBM20 is also present in proteins that have a regulatory role in starch metabolism in plants (e.g. alpha-amylase) or glycogen metabolism in mammals (e.g. lafo

>COG0296 GlgB 1,4-alpha-glucan branching enzyme [Carbohydrate transport and metabolism]

Probab=97.69  E-value=0.0001  Score=73.07  Aligned_cols=77  Identities=16%  Similarity=0.395  Sum_probs=54.8

Q ss_pred             eEEE-EEcCCCCeEEEEeecCCCccc-eeeeee--CCcEEEEEE-cCCceEEEEEEEcCe-----eecCCCCCeeeCCCC
Q 028378           94 PTMI-TWSHDGCEVAVEGSWDNWKTR-IALQRS--GKDFTIMKV-LPSGVYQYRFLVDGL-----WKYAPDLPSTQDDDG  163 (210)
Q Consensus        94 pv~F-~w~~~g~~V~V~GSFdnW~~~-ipM~rs--~~~f~i~l~-Lp~G~YqYKFiVDG~-----W~~Dp~~P~~~D~~G  163 (210)
                      .|.| .|.+.++.|.|.|+||+|+.. .+|...  .+.|++++. +++| ++|||.|++.     ++.||-.-.....-.
T Consensus        37 ~~~F~vWAP~a~~V~vvgdfn~w~~~~~~~~~~~~~G~we~~vp~~~~G-~~Yky~l~~~~g~~~~~~DP~a~~~~~~p~  115 (628)
T COG0296          37 GVRFRVWAPNARRVSLVGDFNDWDGRRMPMRDRKESGIWELFVPGAPPG-TRYKYELIDPSGQLRLKADPYARRQEVGPH  115 (628)
T ss_pred             ceEEEEECCCCCeEEEEeecCCccceecccccCCCCceEEEeccCCCCC-CeEEEEEeCCCCceeeccCchhhccCCCCC
Confidence            6788 599999999999999999972 344322  257999998 9999 9999999644     367776554444344


Q ss_pred             CeeEEEEc
Q 028378          164 NVYNILDL  171 (210)
Q Consensus       164 ~~NNvI~V  171 (210)
                      +..-|.+.
T Consensus       116 ~aS~v~~~  123 (628)
T COG0296         116 TASQVVDL  123 (628)
T ss_pred             CcceecCC
Confidence            44444443

>cd05818 CBM20_water_dikinase Phosphoglucan water dikinase (also known as alpha-glucan water dikinase), N-terminal CBM20 (carbohydrate-binding module, family 20) domain

Probab=97.55  E-value=0.0012  Score=49.58  Aligned_cols=53  Identities=21%  Similarity=0.461  Sum_probs=44.4

Q ss_pred             eeEEEEEc---CCCCeEEEEeec---CCCccceeeeeeCCcEEEEEEcCCc-eEEEEEEE
Q 028378           93 IPTMITWS---HDGCEVAVEGSW---DNWKTRIALQRSGKDFTIMKVLPSG-VYQYRFLV  145 (210)
Q Consensus        93 vpv~F~w~---~~g~~V~V~GSF---dnW~~~ipM~rs~~~f~i~l~Lp~G-~YqYKFiV  145 (210)
                      +.++|+..   ..|+.++|+|+-   .+|+...+|.-..+.|++.+.||.+ .++|||++
T Consensus         2 ~~v~F~~~~~~~~Gq~l~v~G~~~~LG~W~~~~~l~~~~~~W~~~~~l~~~~~ieyKy~~   61 (92)
T cd05818           2 VKLQVRLDHQVKFGEHVAILGSTKELGSWKKKVPMNWTENGWVCDLELDGGELVEYKFVI   61 (92)
T ss_pred             EEEEEEEEEEcCCCCEEEEEeChHHHCCCCCCCccccCCCCEEEEEEeCCCCcEEEEEEE
Confidence            56778766   368899999987   5899877887766789999999987 79999999

This domain is found in the chloroplast-encoded phosphoglucan water dikinase, one of two enzymes involved in the phosphorylation of plant starches. In addition to the CBM20 domain, phosphoglucan water dikinase contains a C-terminal pyruvate binding domain. The CBM20 domain is found in a large number of starch degrading enzymes including alpha-amylase, beta-amylase, glucoamylase, and CGTase (cyclodextrin glucanotransferase). CBM20 is also present in proteins that have a regulatory role in starch metabolism in plants (e.g. alpha-amylase) or glycogen metabolism in mammals (e.g. laforin). CBM20 folds as an antiparallel beta-barrel structure with two starch binding sites. These two sites are thought to differ functionally with site 1 acting as the initial starch recognition site and site 2 involved in the specific recognitio

>cd02856 Glycogen_debranching_enzyme_N_term Glycogen_debranching_enzyme N-terminal domain

Probab=97.54  E-value=0.00047  Score=52.42  Aligned_cols=52  Identities=19%  Similarity=0.233  Sum_probs=40.4

Q ss_pred             EEE-EEcCCCCeEEEEeecCCCc--cceeeeeeC-CcEEEEEE-cCCceEEEEEEEcCe
Q 028378           95 TMI-TWSHDGCEVAVEGSWDNWK--TRIALQRSG-KDFTIMKV-LPSGVYQYRFLVDGL  148 (210)
Q Consensus        95 v~F-~w~~~g~~V~V~GSFdnW~--~~ipM~rs~-~~f~i~l~-Lp~G~YqYKFiVDG~  148 (210)
                      ++| .|.+.+++|.|.. |+++.  ..++|++.. +.|.+.+. +.+|. .|+|.|||.
T Consensus        11 ~~F~vwAP~A~~V~L~l-~~~~~~~~~~~m~~~~~GvW~~~v~~~~~g~-~Y~y~i~g~   67 (103)
T cd02856          11 CNFAVHSENATRIELCL-FDEDGSETRLPLTEEYGGVWHGFLPGIKAGQ-RYGFRVHGP   67 (103)
T ss_pred             eEEEEECCCCCEEEEEE-EeCCCCEEEEEcccccCCEEEEEECCCCCCC-EEEEEECCc
Confidence            577 5899999999998 66664  357898764 68999884 55665 799999993

Glycogen debranching enzymes have both 4-alpha-glucanotransferase and amylo-1,6-glucosidase activities. As a transferase it transfers a segment of a 1,4-alpha-D-glucan to a new 4-position in an acceptor, which may be glucose or another 1,4-alpha-D-glucan. As a glucosidase it catalyzes the endohydrolysis of 1,6-alpha-D-glucoside linkages at points of branching in chains of 1,4-linked alpha-D-glucose residues. The N-terminus of the glycogen debranching enzyme may be related to the immunoglobulin and/or fibronectin type III superfamilies. These domains are associated with different types of catalytic domains at either the N-terminal or C-terminal end and may be involved in homodimeric/tetrameric/dodecameric interactions. Members of this family include members of the alpha amylase family, sialidase, galactose oxidase, cellulase, cellulose, hyaluronate lyase, chitobiase, and chitinase.

>PRK12313 glycogen branching enzyme; Provisional

Probab=97.48  E-value=0.00034  Score=68.77  Aligned_cols=65  Identities=23%  Similarity=0.395  Sum_probs=48.2

Q ss_pred             eEEEE-EcCCCCeEEEEeecCCCcc-ceeeeee-CCcEEEEEE-cCCc-eEEEEEEE-cCee--ecCCCCCee
Q 028378           94 PTMIT-WSHDGCEVAVEGSWDNWKT-RIALQRS-GKDFTIMKV-LPSG-VYQYRFLV-DGLW--KYAPDLPST  158 (210)
Q Consensus        94 pv~F~-w~~~g~~V~V~GSFdnW~~-~ipM~rs-~~~f~i~l~-Lp~G-~YqYKFiV-DG~W--~~Dp~~P~~  158 (210)
                      -|+|+ |.+.|++|+|+|+|++|.. ..+|+|. .+.|.+.+. +.+| .|+|++.+ ||.|  +.||....+
T Consensus        39 gv~Frv~AP~A~~V~v~gdfn~w~~~~~~m~~~~~Gvw~~~i~~~~~g~~Y~y~v~~~~g~~~~~~DPya~~~  111 (633)
T PRK12313         39 GTYFRVWAPNAQAVSVVGDFNDWRGNAHPLVRRESGVWEGFIPGAKEGQLYKYHISRQDGYQVEKIDPFAFYF  111 (633)
T ss_pred             cEEEEEECCCCCEEEEEEecCCCCcccccccccCCCEEEEEeCCCCCCCEEEEEEECCCCeEEecCCCceEEE
Confidence            57884 8899999999999999986 3689885 468999887 4455 67777655 5765  456655533

>cd05820 CBM20_novamyl Novamyl (also known as acarviose transferase, ATase, maltogenic alpha-amylase, glucan 1,4-alpha-maltohydrolase, and AcbD), C-terminal CBM20 (carbohydrate-binding module, family 20) domain

Probab=97.46  E-value=0.0016  Score=49.94  Aligned_cols=54  Identities=28%  Similarity=0.492  Sum_probs=42.9

Q ss_pred             ceeEEEEEc-----CCCCeEEEEeec---CCCccce-----eeeee-CCcEEEEEEcCCc-eEEEEEEE
Q 028378           92 GIPTMITWS-----HDGCEVAVEGSW---DNWKTRI-----ALQRS-GKDFTIMKVLPSG-VYQYRFLV  145 (210)
Q Consensus        92 ~vpv~F~w~-----~~g~~V~V~GSF---dnW~~~i-----pM~rs-~~~f~i~l~Lp~G-~YqYKFiV  145 (210)
                      .|||+|+..     ..|++|+|+|+-   -+|+...     +|... ...|++.+.||.| ..+|||++
T Consensus         2 ~~~v~f~~~~~~~t~~Ge~l~vvGs~~~LG~W~~~~~~a~~~l~~~~~~~W~~~~~lp~~~~veyK~v~   70 (103)
T cd05820           2 QIPVIFTVQNTPETAPGEFLYLTGSVPELGNWSTSTDQAVGPLLCPNWPDWFVVASVPAGTYIEFKFLK   70 (103)
T ss_pred             cccEEEEEeCCcCcCCCCEEEEEECcHHhCCCChhccccccccccCCCCCEEEEEEcCCCCcEEEEEEE
Confidence            389999986     257899999987   4898632     56543 3479999999998 79999999

Novamyl has a five-domain structure similar to that of cyclodextrin glucanotransferase (CGTase). Novamyl has a substrate-binding surface with an open groove which can accommodate both cyclodextrins and linear substrates. The CBM20 domain is found in a large number of starch degrading enzymes including alpha-amylase, beta-amylase, glucoamylase, and CGTase (cyclodextrin glucanotransferase). CBM20 is also present in proteins that have a regulatory role in starch metabolism in plants (e.g. alpha-amylase) or glycogen metabolism in mammals (e.g. laforin). CBM20 folds as an antiparallel beta-barrel structure with two starch binding sites. These two sites are thought to differ functionally with site 1 acting as the initial starch recognition site and site 2 involved in the specific reco

>PRK12568 glycogen branching enzyme; Provisional

Probab=97.44  E-value=0.00073  Score=68.10  Aligned_cols=64  Identities=22%  Similarity=0.483  Sum_probs=48.8

Q ss_pred             eEEE-EEcCCCCeEEEEeecCCCcc-ceeeeee-CCcEEEEEE-cCCceEEEEEEE---cCeee--cCCCCCee
Q 028378           94 PTMI-TWSHDGCEVAVEGSWDNWKT-RIALQRS-GKDFTIMKV-LPSGVYQYRFLV---DGLWK--YAPDLPST  158 (210)
Q Consensus        94 pv~F-~w~~~g~~V~V~GSFdnW~~-~ipM~rs-~~~f~i~l~-Lp~G~YqYKFiV---DG~W~--~Dp~~P~~  158 (210)
                      -|+| +|.+.|++|.|+|+||+|+. +.+|++. .+.|++.+. +.+| ..|||.|   ||.+.  .||-....
T Consensus       139 Gv~FaVWAPnA~~VsVvGDFN~Wdg~~~pM~~~~~GVWelfipg~~~G-~~YKYeI~~~~G~~~~k~DPYA~~~  211 (730)
T PRK12568        139 GVRFAVWAPHAQRVAVVGDFNGWDVRRHPMRQRIGGFWELFLPRVEAG-ARYKYAITAADGRVLLKADPVARQT  211 (730)
T ss_pred             cEEEEEECCCCCEEEEEEecCCCCccceecccCCCCEEEEEECCCCCC-CEEEEEEEcCCCeEeecCCCcceEe
Confidence            4688 59999999999999999986 4689864 568999885 6677 3566666   78754  68866543

>cd05809 CBM20_beta_amylase Beta-amylase, C-terminal CBM20 (carbohydrate-binding module, family 20) domain

Probab=97.40  E-value=0.0012  Score=50.16  Aligned_cols=54  Identities=22%  Similarity=0.423  Sum_probs=41.9

Q ss_pred             ceeEEEEEc----CCCCeEEEEe---ecCCCccce-eeee--e--CCcEEEEEEcCCc-eEEEEEEE
Q 028378           92 GIPTMITWS----HDGCEVAVEG---SWDNWKTRI-ALQR--S--GKDFTIMKVLPSG-VYQYRFLV  145 (210)
Q Consensus        92 ~vpv~F~w~----~~g~~V~V~G---SFdnW~~~i-pM~r--s--~~~f~i~l~Lp~G-~YqYKFiV  145 (210)
                      .|+|+|...    ..|++|+|+|   ++.+|+... +|..  .  ...|++.+.||.| .++|||++
T Consensus         2 ~v~v~f~v~~~~t~~G~~v~v~Gs~~~LG~W~~~~~~~~~~~~~~~~~W~~~~~lp~~~~veyKyv~   68 (99)
T cd05809           2 PVPQTFVVKNVPTTIGETVYITGSRAELGNWDTKQYPIQLYYNSHSNDWRGTVHLPAGRNIEFKAIK   68 (99)
T ss_pred             ceEEEEEEcccccCCCCEEEEEeChHHhCCCChhhhhhccccCCCCCCEEEEEEecCCCcEEEEEEE
Confidence            478999874    3688999999   667998632 3432  1  2579999999998 79999999

Beta-amylase has, in addition to its C-terminal CBM20 domain, an N-terminal catalytic domain belonging to glycosyl hydrolase family 14, which hydrolyzes the alpha-1,4-glucosidic bonds of starch, yielding beta-maltose from the nonreducing end of the substrate. Beta-amylase is found in both plants and microorganisms, however the plant members lack a C-terminal CBM20 domain and are not included in this group. The CBM20 domain is found in a large number of starch degrading enzymes including alpha-amylase, beta-amylase, glucoamylase, and CGTase (cyclodextrin glucanotransferase). CBM20 is also present in proteins that have a regulatory role in starch metabolism in plants (e.g. alpha-amylase) or glycogen metabolism in mammals (e.g. laforin). CBM20 folds as an antiparallel beta-barrel structure with two starch binding sites. These two sites are thought to differ functionally with site 1

>cd05814 CBM20_Prei4 Prei4, N-terminal CBM20 (carbohydrate-binding module, family 20) domain

Probab=97.37  E-value=0.0011  Score=52.06  Aligned_cols=52  Identities=31%  Similarity=0.523  Sum_probs=41.5

Q ss_pred             EEEEEc----CCCCeEEEEee---cCCCcc--ceeeeee--C-CcEEEEEEcCCc-eEEEEEEEc
Q 028378           95 TMITWS----HDGCEVAVEGS---WDNWKT--RIALQRS--G-KDFTIMKVLPSG-VYQYRFLVD  146 (210)
Q Consensus        95 v~F~w~----~~g~~V~V~GS---FdnW~~--~ipM~rs--~-~~f~i~l~Lp~G-~YqYKFiVD  146 (210)
                      ++|+..    ..++.|+|+|+   +.+|+.  .++|.+.  . +.|++.+.||.+ .++|||++.
T Consensus         3 v~F~v~~~~~~~ge~v~v~G~~~~LG~W~~~~a~~l~~~~~~~~~W~~~v~lp~~~~veYkY~~~   67 (120)
T cd05814           3 VTFRVFASELAPGEVVAVVGSLPVLGNWQPEKAVPLEKEDDDCNLWKASIELPRGVDFQYRYFVA   67 (120)
T ss_pred             EEEEEeeccCCCCCEEEEEeChHHhCCCCHHhCeeCccCCCcCCccEEEEEECCCCeEEEEEEEE
Confidence            455543    36889999999   889985  4688875  3 579999999988 899999993

Preimplantation protein 4 (Prei4) is a protein of unknown function that is expressed during mouse preimplantation embryogenesis. In addition to the N-terminal CBM20 domain, Prei4 contains a C-terminal glycerophosphoryl diester phosphodiesterase (GDPD) domain. The CBM20 domain is found in a large number of starch degrading enzymes including alpha-amylase, beta-amylase, glucoamylase, and CGTase (cyclodextrin glucanotransferase). CBM20 is also present in proteins that have a regulatory role in starch metabolism in plants (e.g. alpha-amylase) or glycogen metabolism in mammals (e.g. laforin). CBM20 folds as an antiparallel beta-barrel structure with two starch binding sites. These two sites are thought to differ functionally with site 1 acting as the initial starch recognition site and site 2 involved in the specific recognition of appropriate regions of starch.

>PLN02447 1,4-alpha-glucan-branching enzyme

Probab=97.33  E-value=0.00064  Score=68.76  Aligned_cols=62  Identities=15%  Similarity=0.299  Sum_probs=46.1

Q ss_pred             eEEE-EEcCCCCeEEEEeecCCCcc-ceeeeeeC-CcEEEEEEc-------CCceEEEEEEEc---Ce--eecCCCCC
Q 028378           94 PTMI-TWSHDGCEVAVEGSWDNWKT-RIALQRSG-KDFTIMKVL-------PSGVYQYRFLVD---GL--WKYAPDLP  156 (210)
Q Consensus        94 pv~F-~w~~~g~~V~V~GSFdnW~~-~ipM~rs~-~~f~i~l~L-------p~G~YqYKFiVD---G~--W~~Dp~~P  156 (210)
                      -|+| .|.+.|++|+|+|+||+|+. ..+|+|.+ +.|++.|.-       +.| ..|||.|.   |.  .+.||-..
T Consensus       115 g~~FrvWAP~A~~V~LvGdFN~W~~~~~~M~~~~~GvWe~~ip~~~g~~~~~~G-~~Yky~i~~~~g~~~~r~dpya~  191 (758)
T PLN02447        115 GITYREWAPGAKAAALIGDFNNWNPNAHWMTKNEFGVWEIFLPDADGSPAIPHG-SRVKIRMETPDGRWVDRIPAWIK  191 (758)
T ss_pred             CEEEEEECCCCCEEEEEEecCCCCCCccCceeCCCCEEEEEECCccccccCCCC-CEEEEEEEeCCCcEEeecCchHh
Confidence            5678 59999999999999999986 36899865 689998863       344 36777773   54  45676544

>cd05811 CBM20_glucoamylase Glucoamylase (glucan1,4-alpha-glucosidase), C-terminal CBM20 (carbohydrate-binding module, family 20) domain

Probab=97.29  E-value=0.0027  Score=48.30  Aligned_cols=55  Identities=25%  Similarity=0.521  Sum_probs=43.3

Q ss_pred             CceeEEEEEc---CCCCeEEEEeec---CCCcc--ceeeeee-----CCcEEEEEEcCCc-eEEEEEEE
Q 028378           91 VGIPTMITWS---HDGCEVAVEGSW---DNWKT--RIALQRS-----GKDFTIMKVLPSG-VYQYRFLV  145 (210)
Q Consensus        91 ~~vpv~F~w~---~~g~~V~V~GSF---dnW~~--~ipM~rs-----~~~f~i~l~Lp~G-~YqYKFiV  145 (210)
                      ..++|+|...   ..|+.|+|+|+-   -+|+.  .++|...     +..|++.+.||.+ .++|||+|
T Consensus         5 ~~v~V~F~i~~~t~~Ge~l~v~G~~~~LG~W~~~~a~~m~~~~~t~~~~~W~~~v~lp~~~~veYKy~~   73 (106)
T cd05811           5 TTVAVTFNERVTTSYGENIKIVGSIPQLGNWDTSSAVALSASQYTSSNPLWSVTIPLPAGTSFEYKFIR   73 (106)
T ss_pred             CEEEEEEEEeeEcCCCCeEEEEeCcHHHCCCChhhCcccccccCccCCCcEEEEEEeCCCCcEEEEEEE
Confidence            4578888765   468999999986   47996  3678653     3579999999987 69999997

Glucoamylases are inverting, exo-acting starch hydrolases that hydrolyze starch and related polysaccharides by releasing the nonreducing end glucose. They are mainly active on alpha-1,4-glycosidic bonds but also have some activity towards 1,6-glycosidic bonds occurring in natural oligosaccharides. The ability of glucoamylases to cleave 1-6-glycosidic binds is called "debranching activity" and is of importance in industrial applications, where complete degradation of starch to glucose is needed. Most glucoamylases are multidomain proteins containing an N-terminal catalytic domain, a C-terminal CBM20 domain, and a highly O-glycosylated linker region that connects the two. The CBM20 domain is found in a large number of starch degrading enzymes including alpha-amylase, beta-amylase, glucoamylase, and CGTase (cyclodextrin glucanotransferase). CBM20 is also

>PRK14705 glycogen branching enzyme; Provisional

Probab=97.21  E-value=0.0008  Score=71.12  Aligned_cols=62  Identities=21%  Similarity=0.488  Sum_probs=47.4

Q ss_pred             eEEE-EEcCCCCeEEEEeecCCCccc-eeeeee--CCcEEEEEE-cCCceEEEEEEEc---Cee--ecCCCCC
Q 028378           94 PTMI-TWSHDGCEVAVEGSWDNWKTR-IALQRS--GKDFTIMKV-LPSGVYQYRFLVD---GLW--KYAPDLP  156 (210)
Q Consensus        94 pv~F-~w~~~g~~V~V~GSFdnW~~~-ipM~rs--~~~f~i~l~-Lp~G~YqYKFiVD---G~W--~~Dp~~P  156 (210)
                      -|.| +|.+.+++|.|+|+||+|..+ .+|.+.  .+.|++.+. +.+|. .|||.|+   |.|  +.||-.-
T Consensus       639 Gv~F~VWAP~A~~V~vvgdFN~w~~~~~~m~~~~~~GvW~~fipg~~~G~-~Yky~i~~~~g~~~~k~DPyA~  710 (1224)
T PRK14705        639 GVSFAVWAPNAQAVRVKGDFNGWDGREHSMRSLGSSGVWELFIPGVVAGA-CYKFEILTKAGQWVEKADPLAF  710 (1224)
T ss_pred             eEEEEEECCCCCEEEEEEEecCCCCCcccceECCCCCEEEEEECCCCCCC-EEEEEEEcCCCcEEecCCcccc
Confidence            5678 599999999999999999863 689873  468998875 77885 6888884   554  4566543

>PRK05402 glycogen branching enzyme; Provisional

Probab=97.13  E-value=0.0023  Score=64.07  Aligned_cols=64  Identities=20%  Similarity=0.446  Sum_probs=47.3

Q ss_pred             eEEEE-EcCCCCeEEEEeecCCCcc-ceeeeee-C-CcEEEEEE-cCCc-eEEEEEEEc-Cee--ecCCCCCe
Q 028378           94 PTMIT-WSHDGCEVAVEGSWDNWKT-RIALQRS-G-KDFTIMKV-LPSG-VYQYRFLVD-GLW--KYAPDLPS  157 (210)
Q Consensus        94 pv~F~-w~~~g~~V~V~GSFdnW~~-~ipM~rs-~-~~f~i~l~-Lp~G-~YqYKFiVD-G~W--~~Dp~~P~  157 (210)
                      -|+|+ |.+.|++|.|+|+|++|.. ..+|+|. . +.|.+.+. +++| .|+|++..+ |.|  +.||-.-.
T Consensus       132 gv~FrvwAP~A~~V~l~gdfn~w~~~~~~m~~~~~~Gvw~~~i~~~~~g~~Y~y~v~~~~g~~~~~~DPYa~~  204 (726)
T PRK05402        132 GVRFAVWAPNARRVSVVGDFNGWDGRRHPMRLRGESGVWELFIPGLGEGELYKFEILTADGELLLKADPYAFA  204 (726)
T ss_pred             cEEEEEECCCCCEEEEEEEcCCCCCccccceEcCCCCEEEEEeCCCCCCCEEEEEEeCCCCcEeecCCCceEE
Confidence            47885 8899999999999999986 3689886 3 68998875 6666 677777665 454  45554443

>PRK14706 glycogen branching enzyme; Provisional

Probab=97.12  E-value=0.0011  Score=65.71  Aligned_cols=75  Identities=21%  Similarity=0.286  Sum_probs=52.2

Q ss_pred             eEEE-EEcCCCCeEEEEeecCCCccc-eeeeeeC-CcEEEEEEc-CCceEEEEEEEcC---ee--ecCCCCCeeeCCCCC
Q 028378           94 PTMI-TWSHDGCEVAVEGSWDNWKTR-IALQRSG-KDFTIMKVL-PSGVYQYRFLVDG---LW--KYAPDLPSTQDDDGN  164 (210)
Q Consensus        94 pv~F-~w~~~g~~V~V~GSFdnW~~~-ipM~rs~-~~f~i~l~L-p~G~YqYKFiVDG---~W--~~Dp~~P~~~D~~G~  164 (210)
                      -|+| .|.+.+++|.|+|+||+|... .+|+|.+ +.|.+.+.. ..| ..|||.|++   .+  +.||-...+.. ...
T Consensus        39 Gv~FrvwAP~A~~V~Lvgdfn~w~~~~~pM~~~~~GvW~~~vpg~~~g-~~Yky~I~~~~g~~~~~~DPYa~~~~~-~~~  116 (639)
T PRK14706         39 GVRFAVWAPGAQHVSVVGDFNDWNGFDHPMQRLDFGFWGAFVPGARPG-QRYKFRVTGAAGQTVDKMDPYGSFFEV-RPN  116 (639)
T ss_pred             cEEEEEECCCCCEEEEEEecCCcccccccccccCCCEEEEEECCCCCC-CEEEEEEECCCCCEEeccCcceEEEec-CCC
Confidence            4788 589999999999999999863 6898754 689988763 455 468888854   43  67776653322 233


Q ss_pred             eeEEEE
Q 028378          165 VYNILD  170 (210)
Q Consensus       165 ~NNvI~  170 (210)
                      ...+|.
T Consensus       117 ~~svv~  122 (639)
T PRK14706        117 TASIIW  122 (639)
T ss_pred             CceEEC
Confidence            445543

>cd02852 Isoamylase_N_term Isoamylase N-terminus domain

Probab=97.05  E-value=0.0023  Score=49.69  Aligned_cols=54  Identities=24%  Similarity=0.387  Sum_probs=41.9

Q ss_pred             EEE-EEcCCCCeEEEEeecCCCc---c--ceeeeee----CCcEEEEEE-cCCceEEEEEEEcCeee
Q 028378           95 TMI-TWSHDGCEVAVEGSWDNWK---T--RIALQRS----GKDFTIMKV-LPSGVYQYRFLVDGLWK  150 (210)
Q Consensus        95 v~F-~w~~~g~~V~V~GSFdnW~---~--~ipM~rs----~~~f~i~l~-Lp~G~YqYKFiVDG~W~  150 (210)
                      ++| .|.+.+++|.|.. |++|.   .  +++|++.    ++.|.+.+. +.+|. .|+|.|+|.|.
T Consensus         9 ~~F~vwAP~A~~V~L~l-f~~~~~~~~~~~~~m~~~~~~~~gvW~~~v~~~~~g~-~Y~y~v~g~~~   73 (119)
T cd02852           9 VNFSVYSSNATAVELLL-FDPGDGDEPALEIELDPSVNRTGDVWHVFVEGLKPGQ-LYGYRVDGPFE   73 (119)
T ss_pred             EEEEEECCCCCEEEEEE-EeCCCCCCceEEEeCcCcccccCCEEEEEECCCCCCC-EEEEEECCCCC
Confidence            678 5899999999999 88886   2  4678654    478998875 66776 79999998643

Isoamylase (aka glycogen 6-glucanohydrolase) is one of the starch-debranching enzymes that catalyzes the hydrolysis of alpha-1,6-glucosidic linkages specific in alpha-glucans such as amylopectin or glycogen. Isoamylase contains a bound calcium ion, but this is not in the same position as the conserved calcium ion that has been reported in other alpha-amylase family enzymes. The N-terminus of isoamylase may be related to the immunoglobulin and/or fibronectin type III superfamilies. These domains are associated with different types of catalytic domains at either the N-terminal or C-terminal end and may be involved in homodimeric/tetrameric/dodecameric interactions. Members of this family include members of the alpha amylase family, sialidase, galactose oxidase, cellulase, cellulose, hyaluronate lyase, chitobiase, and chitinase.

>cd05813 CBM20_genethonin_1 Genethonin-1, C-terminal CBM20 (carbohydrate-binding module, family 20) domain

Probab=96.99  E-value=0.003  Score=47.30  Aligned_cols=53  Identities=23%  Similarity=0.370  Sum_probs=41.1

Q ss_pred             eeEEEEEc----CCCCeEEEEeec---CCCccceeeeeeC-CcEEEEEEcCCc-eEEEEEEE
Q 028378           93 IPTMITWS----HDGCEVAVEGSW---DNWKTRIALQRSG-KDFTIMKVLPSG-VYQYRFLV  145 (210)
Q Consensus        93 vpv~F~w~----~~g~~V~V~GSF---dnW~~~ipM~rs~-~~f~i~l~Lp~G-~YqYKFiV  145 (210)
                      |+|+|+..    .+++.|+|+|+-   -+|+...+|.... ..|++.+.||.+ .++|||++
T Consensus         1 v~v~F~v~~~t~~~~e~l~v~G~~~~LG~W~~~~~l~~~~~~~W~~~v~lp~~~~ieYky~~   62 (95)
T cd05813           1 VNVTFRVHYITHSDAQLVAVTGDHEELGSWHSYIPLQYVKDGFWSASVSLPVDTHVEWKFVL   62 (95)
T ss_pred             CeEEEEEEeeeCCCCeEEEEEcChHHHCCCCccccCcCCCCCCEEEEEEecCCCcEEEEEEE
Confidence            45777654    256778999976   4788778887644 479999999988 59999998

Genethonin-1 is a human skeletal muscle protein with no known function. It contains a C-terminal CBM20 domain. The CBM20 domain is found in a large number of starch degrading enzymes including alpha-amylase, beta-amylase, glucoamylase, and CGTase (cyclodextrin glucanotransferase). CBM20 is also present in proteins that have a regulatory role in starch metabolism in plants (e.g. alpha-amylase) or glycogen metabolism in mammals (e.g. laforin). CBM20 folds as an antiparallel beta-barrel structure with two starch binding sites. These two sites are thought to differ functionally with site 1 acting as the initial starch recognition site and site 2 involved in the specific recognition of appropriate regions of starch.

>TIGR02402 trehalose_TreZ malto-oligosyltrehalose trehalohydrolase

Probab=96.90  E-value=0.004  Score=60.51  Aligned_cols=60  Identities=20%  Similarity=0.238  Sum_probs=48.0

Q ss_pred             EEE-EEcCCCCeEEEEeecCCCccceeeeeeC-CcEEEEEE-cCCceEEEEEEEcC-eeecCCCCCeee
Q 028378           95 TMI-TWSHDGCEVAVEGSWDNWKTRIALQRSG-KDFTIMKV-LPSGVYQYRFLVDG-LWKYAPDLPSTQ  159 (210)
Q Consensus        95 v~F-~w~~~g~~V~V~GSFdnW~~~ipM~rs~-~~f~i~l~-Lp~G~YqYKFiVDG-~W~~Dp~~P~~~  159 (210)
                      |+| .|.+.+++|.|...   ++ .++|+|.+ +.|++++. +.+| +.|+|.||| ..+.||......
T Consensus         1 v~FrlwAP~A~~V~L~l~---~~-~~~m~k~~~GvW~~~v~~~~~G-~~Y~y~v~g~~~v~DPya~~~~   64 (542)
T TIGR02402         1 VRFRLWAPTAASVKLRLN---GA-LHAMQRLGDGWFEITVPPVGPG-DRYGYVLDDGTPVPDPASRRQP   64 (542)
T ss_pred             CEEEEECCCCCEEEEEeC---CC-EEeCeECCCCEEEEEECCCCCC-CEEEEEEeeeEEecCccccccc
Confidence            467 48999999999973   33 57999865 58999886 6777 789999999 688999887543

Members of this family are the trehalose biosynthetic enzyme malto-oligosyltrehalose trehalohydrolase, formally known as 4-alpha-D-{(1-4)-alpha-D-glucano}trehalose trehalohydrolase (EC 3.2.1.141). It is the TreZ protein of the TreYZ pathway for trehalose biosynthesis, and alternative to the OtsAB system.

>cd05807 CBM20_CGTase CGTase, C-terminal CBM20 (carbohydrate-binding module, family 20) domain

Probab=96.84  E-value=0.008  Score=45.61  Aligned_cols=54  Identities=17%  Similarity=0.330  Sum_probs=41.1

Q ss_pred             ceeEEEEEc----CCCCeEEEEeec---CCCccc--eeee-e----eCCcEEEEEEcCCc-eEEEEEEE
Q 028378           92 GIPTMITWS----HDGCEVAVEGSW---DNWKTR--IALQ-R----SGKDFTIMKVLPSG-VYQYRFLV  145 (210)
Q Consensus        92 ~vpv~F~w~----~~g~~V~V~GSF---dnW~~~--ipM~-r----s~~~f~i~l~Lp~G-~YqYKFiV  145 (210)
                      .|+++|...    ..|++|+|+|+-   -+|+..  +.|. .    ....|++.+.||.| .++|||++
T Consensus         2 ~v~v~f~v~~~~t~~Gq~l~v~Gs~~~LG~W~~~~a~~~~~~~~~~~~~~W~~~~~lp~~~~~eyK~~~   70 (101)
T cd05807           2 QVSVRFVVNNATTQLGENVYLVGNVHELGNWDPSKAIGPFFNQVVYQYPNWYYDVSVPAGTTIEFKFIK   70 (101)
T ss_pred             cEEEEEEEeccccCCCCEEEEEECHHHHCCCChHHccccccccCCCcCCcEEEEEEcCCCCcEEEEEEE
Confidence            478888864    368999999987   489964  3232 2    22479999999988 79999999

CGTase, also known as cyclodextrin glycosyltransferase and cyclodextrin glucanotransferase, catalyzes the formation of various cyclodextrins (alpha-1,4-glucans) from starch. CGTase has, in addition to its C-terminal CBM20 domain, an N-terminal catalytic domain belonging to glycosyl hydrolase family 13 and an IPT domain of unknown function. The CBM20 domain is found in a large number of starch degrading enzymes including alpha-amylase, beta-amylase, glucoamylase, and CGTase (cyclodextrin glucanotransferase). CBM20 is also present in proteins that have a regulatory role in starch metabolism in plants (e.g. alpha-amylase) or glycogen metabolism in mammals (e.g. laforin). CBM20 folds as an antiparallel beta-barrel structure with two starch binding sites. These two sites are thought to differ functionally with site 1 acting as the initial starch recognition site and site 2 involved in the specific

>cd05816 CBM20_DPE2_repeat2 Disproportionating enzyme 2 (DPE2), N-terminal CBM20 (carbohydrate-binding module, family 20) domain, repeat 2

Probab=96.84  E-value=0.012  Score=44.64  Aligned_cols=51  Identities=20%  Similarity=0.395  Sum_probs=39.4

Q ss_pred             EEEEEc----CCCCeEEEEeec---CCCcc--ceeeeeeC-CcEEEEEEcCCc--eEEEEEEE
Q 028378           95 TMITWS----HDGCEVAVEGSW---DNWKT--RIALQRSG-KDFTIMKVLPSG--VYQYRFLV  145 (210)
Q Consensus        95 v~F~w~----~~g~~V~V~GSF---dnW~~--~ipM~rs~-~~f~i~l~Lp~G--~YqYKFiV  145 (210)
                      |+|+..    ..++.|+|+|+-   .+|+.  .++|+... ..|++.+.||++  .++|||++
T Consensus         2 v~f~v~~~~~~~Ge~v~i~Gs~~~LG~W~~~~a~~l~~~~~~~W~~~v~~p~~~~~ieYKyvi   64 (99)
T cd05816           2 VQFKILCPYVPKGQSVYVTGSSPELGNWDPQKALKLSDVGFPIWEADIDISKDSFPFEYKYII   64 (99)
T ss_pred             EEEEEEcCccCCCCEEEEEEChHHhCCCCccccccCCCCCCCcEEEEEEeCCCCccEEEEEEE
Confidence            455544    368899999986   58996  46887654 479999999875  69999998

DPE2 is a transglucosidase that is essential for the cytosolic metabolism of maltose in plant leaves at night. Maltose is an intermediate on the pathway from starch to sucrose and DPE2 is thought to metabolize the maltose that is exported from the chloroplast. DPE2 has two N-terminal CBM20 domains as well as a C-terminal amylomaltase (4-alpha-glucanotransferase) catalytic domain. DPE1, the plastid version of this enzyme, has a transglucosidase domain that is similar to that of DPE2 but lacks the N-terminal CBM20 domains. Included in this group are PDE2-like proteins from Dictyostelium, Entamoeba, and Bacteroides. The CBM20 domain is found in a large number of starch degrading enzymes including alpha-amylase, beta-amylase, glucoamylase, and CGTase (cyclodextrin glucanotransferase). CBM20 is also present in proteins that have a regulatory role in star

>cd02853 MTHase_N_term Maltooligosyl trehalose synthase (MTSase) N-terminus domain

Probab=96.75  E-value=0.0054  Score=45.02  Aligned_cols=60  Identities=25%  Similarity=0.296  Sum_probs=44.0

Q ss_pred             EEEE-EcCCCCeEEEEeecCCCccceeeeeeC-CcEEEEEEcCCceEEEEEEEc-CeeecCCCCCee
Q 028378           95 TMIT-WSHDGCEVAVEGSWDNWKTRIALQRSG-KDFTIMKVLPSGVYQYRFLVD-GLWKYAPDLPST  158 (210)
Q Consensus        95 v~F~-w~~~g~~V~V~GSFdnW~~~ipM~rs~-~~f~i~l~Lp~G~YqYKFiVD-G~W~~Dp~~P~~  158 (210)
                      ++|+ |.+.+++|.|....  |. .++|+|.. +.|++.+..-+|. .|+|.|+ +..+.||.....
T Consensus        10 ~~F~vwAP~A~~V~l~l~~--~~-~~~m~~~~~G~W~~~v~~~~g~-~Y~y~v~~~~~~~DP~a~~~   72 (85)
T cd02853          10 TRFRLWAPDAKRVTLRLDD--GE-EIPMQRDGDGWFEAEVPGAAGT-RYRYRLDDGTPVPDPASRFQ   72 (85)
T ss_pred             EEEEEeCCCCCEEEEEecC--CC-cccCccCCCcEEEEEeCCCCCC-eEEEEECCCcCCCCCccccC
Confidence            6784 88999999999643  54 47898754 6899987633665 4777776 558899987753

MTSase and maltooligosyl trehalose trehalohydrolase (MTHase) work together to produce trehalose. MTSase is responsible for converting the alpha-1,4-glucosidic linkage to an alpha,alpha-1,1-glucosidic linkage at the reducing end of the maltooligosaccharide through an intramolecular transglucosylation reaction, while MTHase hydrolyzes the penultimate alpha-1,4 linkage of the reducing end, resulting in the release of trehalose. The N-terminus of MTSase may be related to the immunoglobulin and/or fibronectin type III superfamilies. These domains are associated with different types of catalytic domains at either the N-terminal or C-terminal end and may be involved in homodimeric/tetrameric/dodecameric interactions. Members of this family include members of the alpha amylase family, sialidase, galactose oxidase, cellulase, cellulose, hyaluronate lyase, chitobiase, and chitinase.

>cd05817 CBM20_DSP Dual-specificity phosphatase (DSP), N-terminal CBM20 (carbohydrate-binding module, family 20) domain

Probab=96.74  E-value=0.0062  Score=46.29  Aligned_cols=45  Identities=22%  Similarity=0.455  Sum_probs=37.1

Q ss_pred             CCCCeEEEEee---cCCCccc--eeeeeeC-CcEEEEEEcCCc-eEEEEEEE
Q 028378          101 HDGCEVAVEGS---WDNWKTR--IALQRSG-KDFTIMKVLPSG-VYQYRFLV  145 (210)
Q Consensus       101 ~~g~~V~V~GS---FdnW~~~--ipM~rs~-~~f~i~l~Lp~G-~YqYKFiV  145 (210)
                      ..|..|+|+|+   ..+|+..  ++|...+ ..|++.+.||.+ .++|||+|
T Consensus        11 ~~Ge~l~v~Gs~~~LG~W~~~~a~~m~~~~~~~W~~~v~lp~~~~veYKY~i   62 (100)
T cd05817          11 QFGEAVYISGNCNQLGNWNPSKAKRMQWNEGDLWTVDVGIPESVYIEYKYFV   62 (100)
T ss_pred             CCCCEEEEEeCcHHHCCCCccccCcccCCCCCCEEEEEEECCCCcEEEEEEE
Confidence            46899999999   5689963  5787654 479999999987 69999998

This CBM20 domain is located at the N-terminus of a protein tyrosine phosphatase of unknown function found in slime molds and ciliated protozoans. The CBM20 domain is found in a large number of starch degrading enzymes including alpha-amylase, beta-amylase, glucoamylase, and CGTase (cyclodextrin glucanotransferase). CBM20 is also present in proteins that have a regulatory role in starch metabolism in plants (e.g. alpha-amylase) or glycogen metabolism in mammals (e.g. laforin). CBM20 folds as an antiparallel beta-barrel structure with two starch binding sites. These two sites are thought to differ functionally with site 1 acting as the initial starch recognition site and site 2 involved in the specific recognition of appropriate regions of starch.

>TIGR01515 branching_enzym alpha-1,4-glucan:alpha-1,4-glucan 6-glycosyltransferase

Probab=96.73  E-value=0.0078  Score=59.27  Aligned_cols=64  Identities=22%  Similarity=0.422  Sum_probs=47.8

Q ss_pred             eEEE-EEcCCCCeEEEEeecCCCccc-eeeeee--CCcEEEEEE-cCCceEEEEEEEc---Ce--eecCCCCCee
Q 028378           94 PTMI-TWSHDGCEVAVEGSWDNWKTR-IALQRS--GKDFTIMKV-LPSGVYQYRFLVD---GL--WKYAPDLPST  158 (210)
Q Consensus        94 pv~F-~w~~~g~~V~V~GSFdnW~~~-ipM~rs--~~~f~i~l~-Lp~G~YqYKFiVD---G~--W~~Dp~~P~~  158 (210)
                      -|+| .|.+.+++|.|.|+|++|... .+|++.  .+.|++.+. +.+|. .|||.|+   |.  .+.||-.-..
T Consensus        29 g~~FrvwAP~A~~V~L~~dfn~w~~~~~~m~~~~~~Gvw~~~i~~~~~g~-~Y~y~v~~~~g~~~~~~DPYA~~~  102 (613)
T TIGR01515        29 GTRFCVWAPNAREVRVAGDFNYWDGREHPMRRRNDNGIWELFIPGIGEGE-LYKYEIVTNNGEIRLKADPYAFYA  102 (613)
T ss_pred             cEEEEEECCCCCEEEEEEecCCCCCceecceEecCCCEEEEEeCCCCCCC-EEEEEEECCCCcEEEeCCCCEeee
Confidence            4678 499999999999999999853 589875  368998875 35564 5777774   55  4778866533

A sequence from Arabidopsis thaliana, GP|9294564, scores just above trusted, but appears either to contain corrupt sequence or, more likely, to be a pseudogene as some of the conserved catalytic residues common to the alpha amylase family are not conserved here.

>cd05467 CBM20 The family 20 carbohydrate-binding module (CBM20), also known as the starch-binding domain, is found in a large number of starch degrading enzymes including alpha-amylase, beta-amylase, glucoamylase, and CGTase (cyclodextrin glucanotransferase)

Probab=96.64  E-value=0.0083  Score=44.19  Aligned_cols=45  Identities=33%  Similarity=0.547  Sum_probs=37.5

Q ss_pred             CCCCeEEEEeecC---CCcc--ceeeeeeC--CcEEEEEEcCC--c-eEEEEEEE
Q 028378          101 HDGCEVAVEGSWD---NWKT--RIALQRSG--KDFTIMKVLPS--G-VYQYRFLV  145 (210)
Q Consensus       101 ~~g~~V~V~GSFd---nW~~--~ipM~rs~--~~f~i~l~Lp~--G-~YqYKFiV  145 (210)
                      ..|..|+|+|+..   +|+.  .++|...+  +.|++.+.|+.  + .++|||++
T Consensus        11 ~~Ge~l~v~G~~~~LG~W~~~~a~~m~~~~~~~~W~~~v~~~~~~~~~~~yKy~~   65 (96)
T cd05467          11 QFGQSVYVVGSHPELGNWDPAKALRLNTSNSYPLWTGEIPLPAPEGQVIEYKYVI   65 (96)
T ss_pred             CCCCEEEEEeCcHHhCCcChhcCccccCCCCCCcEEEEEEecCCCCCeEEEEEEE
Confidence            5789999999984   7985  46888654  57999999998  6 79999998

CBM20 is also present in proteins that have a regulatory role in starch metabolism in plants (e.g. alpha-amylase) or glycogen metabolism in mammals (e.g. laforin). CBM20 folds as an antiparallel beta-barrel structure with two starch binding sites. These two sites are thought to differ functionally with site 1 acting as the initial starch recognition site and site 2 involved in the specific recognition of appropriate regions of starch.

>cd05810 CBM20_alpha_MTH Glucan 1,4-alpha-maltotetraohydrolase (alpha-MTH), C-terminal CBM20 (carbohydrate-binding module, family 20) domain

Probab=96.52  E-value=0.01  Score=45.09  Aligned_cols=53  Identities=19%  Similarity=0.350  Sum_probs=40.6

Q ss_pred             eeEEEEEc----CCCCeEEEEeecC---CCcc--ceeeeeeC-CcEEEEEEcCCc-eEEEEEEE
Q 028378           93 IPTMITWS----HDGCEVAVEGSWD---NWKT--RIALQRSG-KDFTIMKVLPSG-VYQYRFLV  145 (210)
Q Consensus        93 vpv~F~w~----~~g~~V~V~GSFd---nW~~--~ipM~rs~-~~f~i~l~Lp~G-~YqYKFiV  145 (210)
                      |+|+|.-.    ..++.|+|+|+-.   +|+.  .++|.... ..|.+.+.||.+ ..+|||++
T Consensus         1 v~v~f~~~~~~t~~Ge~l~v~Gs~~~LG~W~~~~a~~l~~~~~~~W~~~v~lp~~~~veyKyv~   64 (97)
T cd05810           1 VSVTFSCNNGTTQLGQSVYVVGNVPQLGNWSPADAVKLDPTAYPTWSGSISLPASTNVEWKCLK   64 (97)
T ss_pred             CeEEEEEeecccCCCCeEEEEEChHHhCCCChhhcccccCCCCCeEEEEEEcCCCCeEEEEEEE
Confidence            45666632    3688999999875   8996  35676543 469999999988 79999988

Alpha-MTH, also known as maltotetraose-forming exo-amylase or G4-amylase, is an exo-amylase found in bacteria that degrades starch from its non-reducing end. Most alpha-MTHs have, in addition to the C-terminal CBM20 domain, an N-terminal glycosyl hydrolase family 13 catalytic domain. The CBM20 domain is found in a large number of starch degrading enzymes including alpha-amylase, beta-amylase, glucoamylase, and CGTase (cyclodextrin glucanotransferase). CBM20 is also present in proteins that have a regulatory role in starch metabolism in plants (e.g. alpha-amylase) or glycogen metabolism in mammals (e.g. laforin). CBM20 folds as an antiparallel beta-barrel structure with two starch binding sites. These two sites are thought to differ functionally with site 1 acting as the initial starch recognition site and site 2 involved in the specific recognitio

>PRK05402 glycogen branching enzyme; Provisional

Probab=96.33  E-value=0.011  Score=59.20  Aligned_cols=61  Identities=16%  Similarity=-0.009  Sum_probs=44.2

Q ss_pred             eEEE-EEcCCCCeEEEEeecCCCccceeeeee--CCcEEEEEEcCCc-eEEEEEEEcCe--eecCCCC
Q 028378           94 PTMI-TWSHDGCEVAVEGSWDNWKTRIALQRS--GKDFTIMKVLPSG-VYQYRFLVDGL--WKYAPDL  155 (210)
Q Consensus        94 pv~F-~w~~~g~~V~V~GSFdnW~~~ipM~rs--~~~f~i~l~Lp~G-~YqYKFiVDG~--W~~Dp~~  155 (210)
                      =++| +|.+.|++|.|+|+||+ ....+|+|.  .+.|++.+.+..| .|.|+..-||+  ...||-.
T Consensus        29 g~~f~vwaP~A~~V~vvgdfn~-~~~~~m~~~~~~G~w~~~ip~~~g~~YKy~i~~~g~~~~k~DPya   95 (726)
T PRK05402         29 GLVVRALLPGAEEVWVILPGGG-RKLAELERLHPRGLFAGVLPRKGPFDYRLRVTWGGGEQLIDDPYR   95 (726)
T ss_pred             cEEEEEECCCCeEEEEEeecCC-CccccceEcCCCceEEEEecCCCCCCeEEEEEeCCceeEeccccc
Confidence            4677 69999999999999997 345789974  4689998887777 55544332786  4556544

>PF11806 DUF3327: Domain of unknown function (DUF3327); InterPro: IPR021764 This entry represents the N-terminal domain of enterochelin esterase

Probab=95.78  E-value=0.13  Score=40.92  Aligned_cols=81  Identities=22%  Similarity=0.260  Sum_probs=53.9

Q ss_pred             eeEEEEEc----CCCCeEEEEeecCCCcc-----ceeeeeeCC--cEEEEEEcCCc-eEEEEEEEcCe------------
Q 028378           93 IPTMITWS----HDGCEVAVEGSWDNWKT-----RIALQRSGK--DFTIMKVLPSG-VYQYRFLVDGL------------  148 (210)
Q Consensus        93 vpv~F~w~----~~g~~V~V~GSFdnW~~-----~ipM~rs~~--~f~i~l~Lp~G-~YqYKFiVDG~------------  148 (210)
                      +-|||.|.    .....|.|-++.++.+.     ...|+|-++  .|..++.|+.+ +-.|+|+.+-.            
T Consensus         2 ~~VTFlWRdp~~~~~~~~~V~~~~ngvtD~~~~~~~~l~Rl~gTDVW~~t~~lp~d~rgSY~~~p~~~~~~~~~r~~~r~   81 (122)
T PF11806_consen    2 CLVTFLWRDPDEGASANVRVYGDINGVTDHHDPDPQSLQRLPGTDVWYWTYRLPADWRGSYSFIPDVPDARGAQREWWRA   81 (122)
T ss_dssp             -EEEEEEE-TSTTT----EEEEEETTTTCGGGT---BEEE-TTSSEEEEEEEEETT-EEEEEEEEES-T-HHHHHHHHHH
T ss_pred             cEEEEEEeCCCCCCCceeEEEEECCcccccccCChhhheeCCCCceEEEEEEECcccEEEEEEEecCcccchhHHHHHHH
Confidence            35899999    45578999999999864     357999765  69999999988 88999997533            


Q ss_pred             ----eecCCCCCee-eCC---CCCeeEEEEcCC
Q 028378          149 ----WKYAPDLPST-QDD---DGNVYNILDLQV  173 (210)
Q Consensus       149 ----W~~Dp~~P~~-~D~---~G~~NNvI~V~d  173 (210)
                          -+.||-||.. ...   .|...+++++.+
T Consensus        82 ~l~~~~~DPlNp~~~~~~~~~~g~~~S~l~Lp~  114 (122)
T PF11806_consen   82 ILAQAQADPLNPRPWPNGAQDRGNAASVLELPD  114 (122)
T ss_dssp             HGGG-B--TTSSSEEE-TT---SSEEEEEE-TT
T ss_pred             HHhccCCCCCCCCCCCCCccccccccCceeCCC
Confidence                3568989854 333   489999999854

The activity of the enzyme has been characterised [, ]. Fes catalyses the hydrolysis of the 2,3-dihydroxy-N-benzoyl-L-serine trimer, enterochelin, forming 2,3-dihydroxybenzoylserine. It also catalyses hydrolysis of free enterobactin and ferric enterobactin. Upon hydrolysis of ferric enterobactin by Fes, released iron is probably reduced by a second enzyme. Enterochelin esterase represents a family of non-peptidase homologues belonging to the MEROPS peptidase family S9, clan SC. ; GO: 0005506 iron ion binding, 0008849 enterochelin esterase activity, 0006826 iron ion transport, 0005737 cytoplasm; PDB: 3MGA_B 3C87_B 3C8H_B 3C8D_A 2B20_A.

>PF03423 CBM_25: Carbohydrate binding domain (family 25); InterPro: IPR005085 A carbohydrate-binding module (CBM) is defined as a contiguous amino acid sequence within a carbohydrate-active enzyme with a discreet fold having carbohydrate-binding activity

Probab=95.54  E-value=0.096  Score=39.24  Aligned_cols=54  Identities=15%  Similarity=0.394  Sum_probs=35.2

Q ss_pred             eEEEEEcC------CCCeEEEEeecCCCccc--eeeeeeC-----CcEEEEEEcCCceEEEEEEE-cC
Q 028378           94 PTMITWSH------DGCEVAVEGSWDNWKTR--IALQRSG-----KDFTIMKVLPSGVYQYRFLV-DG  147 (210)
Q Consensus        94 pv~F~w~~------~g~~V~V~GSFdnW~~~--ipM~rs~-----~~f~i~l~Lp~G~YqYKFiV-DG  147 (210)
                      .|+|.|..      ++.+|.|.+.|++|+..  +.|++..     +-|+++|.+|..-|+..|+. ||
T Consensus         3 ~vtVyYn~~~~~l~g~~~v~~~~G~n~W~~~~~~~m~~~~~~~~~~~~~~tv~vP~~a~~~dfvF~dg   70 (87)
T PF03423_consen    3 TVTVYYNPSLTALSGAPNVHLHGGFNRWTHVPGFGMTKMCVPDEGGWWKATVDVPEDAYVMDFVFNDG   70 (87)
T ss_dssp             EEEEEE---E-SSS-S-EEEEEETTS-B-SSS-EE-EEESS---TTEEEEEEE--TTTSEEEEEEE-S
T ss_pred             EEEEEEEeCCCCCCCCCcEEEEecCCCCCcCCCCCcceeeeeecCCEEEEEEEEcCCceEEEEEEcCC
Confidence            45666632      47899999999999963  6788754     56899999999988888887 54

A few exceptions are CBMs in cellulosomal scaffolding proteins and rare instances of independent putative CBMs. The requirement of CBMs existing as modules within larger enzymes sets this class of carbohydrate-binding protein apart from other non-catalytic sugar binding proteins such as lectins and sugar transport proteins. CBMs were previously classified as cellulose-binding domains (CBDs) based on the initial discovery of several modules that bound cellulose [, ]. However, additional modules in carbohydrate-active enzymes are continually being found that bind carbohydrates other than cellulose yet otherwise meet the CBM criteria, hence the need to reclassify these polypeptides using more inclusive terminology. Previous classification of cellulose-binding domains were based on amino acid similarity. Groupings of CBDs were called "Types" and numbered with roman numerals (e.g. Type I or Type II CBDs). In keeping with the glycoside hydrolase classification, these groupings are now called families and numbered with Arabic numerals. Families 1 to 13 are the same as Types I to XIII. For a detailed review on the structure and binding modes of CBMs see []. This entry represents CBM25 from CAZY which has a starch-binding function as has been demonstrated in one case.; PDB: 2LAB_A 2C3X_B 2C3V_A 2C3W_C 2LAA_A.

>TIGR02104 pulA_typeI pullulanase, type I

Probab=95.47  E-value=0.046  Score=53.70  Aligned_cols=63  Identities=16%  Similarity=0.299  Sum_probs=45.3

Q ss_pred             EEE-EEcCCCCeEEEEeecCCCcc-----ceeeeee-CCcEEEEEE-cCCc-eEEEEEEEcCe--eecCCCCCee
Q 028378           95 TMI-TWSHDGCEVAVEGSWDNWKT-----RIALQRS-GKDFTIMKV-LPSG-VYQYRFLVDGL--WKYAPDLPST  158 (210)
Q Consensus        95 v~F-~w~~~g~~V~V~GSFdnW~~-----~ipM~rs-~~~f~i~l~-Lp~G-~YqYKFiVDG~--W~~Dp~~P~~  158 (210)
                      |+| .|.+.+++|.|.+ |++|..     .++|.+. ++.|++.+. +..| .|.|++..+|.  ++.||-...+
T Consensus        21 ~~F~vwaP~a~~V~l~~-~~~~~~~~~~~~~~m~~~~~gvw~~~i~~~~~g~~Y~y~v~~~~~~~~~~DPya~~~   94 (605)
T TIGR02104        21 TVFRVWAPTATEVELLL-YKSGEDGEPYKVVKMKRGENGVWSAVLEGDLHGYFYTYQVCINGKWRETVDPYAKAV   94 (605)
T ss_pred             eEEEEECCCCCEEEEEE-EcCCCCCccceEEecccCCCCEEEEEECCCCCCCEEEEEEEcCCCeEEEcCCCccee
Confidence            788 5899999999997 888853     4688875 468999886 4566 45555444565  5889877543

Pullulan is an unusual, industrially important polysaccharide in which short alpha-1,4 chains (maltotriose) are connected in alpha-1,6 linkages. Enzymes that cleave alpha-1,6 linkages in pullulan and release maltotriose are called pullulanases although pullulan itself may not be the natural substrate. This family consists of pullulanases related to the subfamilies described in TIGR02102 and TIGR02103 but having a different domain architecture with shorter sequences. Members are called type I pullulanases.

>cd05815 CBM20_DPE2_repeat1 Disproportionating enzyme 2 (DPE2), N-terminal CBM20 (carbohydrate-binding module, family 20) domain, repeat 1

Probab=95.19  E-value=0.22  Score=37.58  Aligned_cols=45  Identities=24%  Similarity=0.428  Sum_probs=35.2

Q ss_pred             CCCCeEEEEeec---CCCcc--ceeeeee--C--CcEEEEEEcCCc-eEEEEEEE
Q 028378          101 HDGCEVAVEGSW---DNWKT--RIALQRS--G--KDFTIMKVLPSG-VYQYRFLV  145 (210)
Q Consensus       101 ~~g~~V~V~GSF---dnW~~--~ipM~rs--~--~~f~i~l~Lp~G-~YqYKFiV  145 (210)
                      ..|++|+|+|+-   -+|+.  .++|...  +  ..|++.+.++.+ .++|||+|
T Consensus        11 ~~Ge~l~v~G~~~~LG~W~~~~a~~m~~~~~~~~~~W~~~v~~~~~~~veYky~v   65 (101)
T cd05815          11 QWGQSLLICGSDPLLGSWNVKKGLLLKPSHQGDVLVWSGSISVPPGFSSEYNYYV   65 (101)
T ss_pred             cCCCEEEEEcChHHcCCcChHhcEeeeecCCCCCCEEEEEEEeCCCCcEEEEEEE
Confidence            468999999987   47975  3678542  2  269999999887 69999999

DPE2 is a transglucosidase that is essential for the cytosolic metabolism of maltose in plant leaves at night. Maltose is an intermediate on the pathway from starch to sucrose and DPE2 is thought to metabolize the maltose that is exported from the chloroplast. DPE2 has two N-terminal CBM20 starch binding domains as well as a C-terminal amylomaltase (4-alpha-glucanotransferase) catalytic domain. DPE1, the plastid version of this enzyme, has a transglucosidase domain that is similar to that of DPE2 but lacks the N-terminal carbohydrate-binding domains. The CBM20 domain is found in a large number of starch degrading enzymes including alpha-amylase, beta-amylase, glucoamylase, and CGTase (cyclodextrin glucanotransferase). CBM20 is also present in proteins that have a regulatory role in starch metabolism in plants (e.g. alpha-amylase) or glycogen metabol

>PLN02960 alpha-amylase

Probab=94.40  E-value=0.036  Score=57.21  Aligned_cols=53  Identities=17%  Similarity=0.389  Sum_probs=39.3

Q ss_pred             eEEE-EEcCCCCeEEEEeecCCCccc-eeee-----eeC-CcEEEEEE--cCCce-------EEEEEEEc
Q 028378           94 PTMI-TWSHDGCEVAVEGSWDNWKTR-IALQ-----RSG-KDFTIMKV--LPSGV-------YQYRFLVD  146 (210)
Q Consensus        94 pv~F-~w~~~g~~V~V~GSFdnW~~~-ipM~-----rs~-~~f~i~l~--Lp~G~-------YqYKFiVD  146 (210)
                      -|.| .|.++|+.++|+|+||||+.+ ..|.     |++ +.|.|+|+  |.+|+       -+|-|..|
T Consensus       129 ~~~~~~wap~a~~~~~~gdfn~w~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  198 (897)
T PLN02960        129 RVDFMEWAPGARYCSLVGDFNNWSPTENRAREGYFGHDDFGYWFIILEDKLREGEEPDELYFQEYNYVDD  198 (897)
T ss_pred             CeEEEEEcCCceeEEEeecccCCCcccchhhcccccccccceEEEEechhhhcCCCcchhhhhhhccccc
Confidence            3455 799999999999999999975 4554     333 57999884  77773       35777765

>cd05806 CBM20_laforin Laforin protein tyrosine phosphatase, N-terminal CBM20 (carbohydrate-binding module, family 20) domain

Probab=94.31  E-value=0.25  Score=39.06  Aligned_cols=48  Identities=21%  Similarity=0.396  Sum_probs=37.3

Q ss_pred             EEcCCCCeEEEEeec---CCCccc--eeeeee-------C-CcEEEEEEcCCc----eEEEEEEE
Q 028378           98 TWSHDGCEVAVEGSW---DNWKTR--IALQRS-------G-KDFTIMKVLPSG----VYQYRFLV  145 (210)
Q Consensus        98 ~w~~~g~~V~V~GSF---dnW~~~--ipM~rs-------~-~~f~i~l~Lp~G----~YqYKFiV  145 (210)
                      +..+.+.+|+|+|+-   -+|+..  ++|...       . ..|.+.+.|+.+    .++|||+.
T Consensus        10 ~~~~~gq~v~IvGsipeLG~Wd~~~Av~Ls~~~yt~~~~~~~~W~~~v~lp~~~~~~~~eYKfv~   74 (112)
T cd05806          10 TFADRDTELLVLGSRPELGSWDPQRAVPMRPARKALSPQEPSLWLGEVELSEPGSEDTFWYKFLK   74 (112)
T ss_pred             eecCCCCEEEEEECchhcCCCCcccccccccccccccCCCCCEEEEEEEcCCCCcCceEEEEEEE
Confidence            455788999999975   579963  567643       2 359999999985    69999998

Laforin, encoded by the EPM2A gene, is a dual-specificity phosphatase that dephosphorylates complex carbohydrates. Mutations in the gene encoding laforin result in Lafora disease, a fatal autosomal recessive neurodegenerative disorder characterized by the presence of intracellular deposits of insoluble, abnormally branched, glycogen-like polymers, known as Lafora bodies, in neurons, muscle, liver, and other tissues. The molecular basis for the formation of these Lafora bodies is unknown. Laforin is one of the only phosphatases that contains a carbohydrate-binding module. The CBM20 domain is found in a large number of starch degrading enzymes including alpha-amylase, beta-amylase, glucoamylase, and CGTase (cyclodextrin glucanotransferase). CBM20 is also present in proteins that have a regulatory role in starch metabolism in plants (e.g. alpha-amylase) or glycogen

>PRK10439 enterobactin/ferric enterobactin esterase; Provisional

Probab=93.82  E-value=0.33  Score=45.82  Aligned_cols=86  Identities=17%  Similarity=0.183  Sum_probs=59.6

Q ss_pred             CCceeEEEEEcC-CC-------CeEEEE--eecC--CCccceeeeeeCC--cEEEEEEcCCc-eEEEEEEEc---C----
Q 028378           90 GVGIPTMITWSH-DG-------CEVAVE--GSWD--NWKTRIALQRSGK--DFTIMKVLPSG-VYQYRFLVD---G----  147 (210)
Q Consensus        90 ~~~vpv~F~w~~-~g-------~~V~V~--GSFd--nW~~~ipM~rs~~--~f~i~l~Lp~G-~YqYKFiVD---G----  147 (210)
                      +..+-|||-|.. .+       +.|+|.  |.-|  .+.....|+|-++  .|..++.||.. +-.|+|+++   .    
T Consensus        36 ~~~~~vTFlwr~~~~~~~~~~~~~v~~~~n~~tdh~~~~~~~~l~rl~~tDvW~~~~~~p~~~r~sY~~~~~~~~~~~~~  115 (411)
T PRK10439         36 DGMVRVTFWWRDPQGDEEHSTIRRVWIYINGVTDHHQNSQPQSLQRIAGTDVWQWSTELSANWRGSYCFIPTERDDIFSA  115 (411)
T ss_pred             CCcEEEEEEeeCCCCCcccccceeEEEeCCCCCCcCccCCcchhhccCCCceEEEEEEECcccEEEEEEEeccccccccc
Confidence            445899999995 33       258873  2222  2333357999765  69999999998 899999992   1    


Q ss_pred             ---------------------eeecCCCCCee-eCCCCCeeEEEEcCCCc
Q 028378          148 ---------------------LWKYAPDLPST-QDDDGNVYNILDLQVNI  175 (210)
Q Consensus       148 ---------------------~W~~Dp~~P~~-~D~~G~~NNvI~V~d~v  175 (210)
                                           .-+.||.++.. .+..|+..|+|++.+..
T Consensus       116 ~~~~~~~~~~~~r~~~~~l~~~~~~DP~N~~~~~~~~~~~~S~l~lp~a~  165 (411)
T PRK10439        116 FAPAPSPDRLELREGWRKLLPQAIADPLNPQSWRGGRGHAVSALEMPQAP  165 (411)
T ss_pred             cccccchhHHHHHHHHHHhhccccCCCCCCCCCCCCCccccccccCCCCC
Confidence                                 11479999854 45556667999987654

>PLN02950 4-alpha-glucanotransferase

Probab=92.97  E-value=0.75  Score=47.90  Aligned_cols=70  Identities=19%  Similarity=0.339  Sum_probs=50.5

Q ss_pred             CCCCceeEEEEEc----CCCCeEEEEeec---CCCccc--eeeeee-CCcEEEEEEcCCc--eEEEEEEE---cCe--ee
Q 028378           88 GDGVGIPTMITWS----HDGCEVAVEGSW---DNWKTR--IALQRS-GKDFTIMKVLPSG--VYQYRFLV---DGL--WK  150 (210)
Q Consensus        88 ~~~~~vpv~F~w~----~~g~~V~V~GSF---dnW~~~--ipM~rs-~~~f~i~l~Lp~G--~YqYKFiV---DG~--W~  150 (210)
                      +....++|+|+..    ..|.+|+|+|+-   -+|+..  ++|... ...|.+.+.|+.+  ..+|||++   +|.  |-
T Consensus       148 ~~~~~v~V~F~v~~~~~~~Gq~v~VvGs~~eLGnW~~~~a~~Ls~~~~p~W~~~v~lp~~~~~~EYKyv~~~~~g~v~WE  227 (909)
T PLN02950        148 PAPDEIVVRFKIACPRLEEGTSVYVTGSIAQLGNWQVDDGLKLNYTGDSIWEADCLVPKSDFPIKYKYALQTAEGLVSLE  227 (909)
T ss_pred             CCCCceeEEEEEecCccCCCCeEEEEechhhcCCCCcccccccccCCCCcEEEEEEecCCCceEEEEEEEEcCCCceEEe
Confidence            3455688899864    358999999986   479963  567643 3579999999987  59999998   344  65


Q ss_pred             cCCCCCe
Q 028378          151 YAPDLPS  157 (210)
Q Consensus       151 ~Dp~~P~  157 (210)
                      ..++.-.
T Consensus       228 ~g~NR~~  234 (909)
T PLN02950        228 LGVNREL  234 (909)
T ss_pred             eCCCcee
Confidence            5555443

>TIGR02100 glgX_debranch glycogen debranching enzyme GlgX

Probab=92.94  E-value=0.32  Score=48.96  Aligned_cols=52  Identities=17%  Similarity=0.202  Sum_probs=39.0

Q ss_pred             EEE-EEcCCCCeEEEEeecCCCcc----ceeeeee-CCcEEEEEE-cCCceEEEEEEEcCe
Q 028378           95 TMI-TWSHDGCEVAVEGSWDNWKT----RIALQRS-GKDFTIMKV-LPSGVYQYRFLVDGL  148 (210)
Q Consensus        95 v~F-~w~~~g~~V~V~GSFdnW~~----~ipM~rs-~~~f~i~l~-Lp~G~YqYKFiVDG~  148 (210)
                      |+| .|++.|++|.|. -|+++..    +++|.+. ++.|.+.+. +..|. .|+|.|+|.
T Consensus        16 ~~F~vwap~A~~V~L~-l~~~~~~~~~~~~~m~~~~~gvW~~~v~~~~~g~-~Y~yrv~g~   74 (688)
T TIGR02100        16 VNFALFSANAEKVELC-LFDAQGEKEEARLPLPERTDDIWHGYLPGAQPGQ-LYGYRVHGP   74 (688)
T ss_pred             EEEEEECCCCCEEEEE-EEcCCCCceeeEEecccCCCCEEEEEECCCCCCC-EEEEEEeee
Confidence            678 588999999986 5665542    4678764 568999885 66776 499999884

This family consists of the GlgX protein from the E. coli glycogen operon and probable equivalogs from other prokaryotic species. GlgX is not required for glycogen biosynthesis, but instead acts as a debranching enzyme for glycogen catabolism. This model distinguishes GlgX from pullanases and other related proteins that also operate on alpha-1,6-glycosidic linkages. In the wide band between the trusted and noise cutoffs are functionally similar enzymes, mostly from plants, that act similarly but usually are termed isoamylase.

>TIGR02102 pullulan_Gpos pullulanase, extracellular, Gram-positive

Probab=92.58  E-value=0.64  Score=49.38  Aligned_cols=64  Identities=17%  Similarity=0.279  Sum_probs=46.3

Q ss_pred             EEE-EEcCCCCeEEEEe-ecCCCcc---ceeeeeeC-CcEEEEEE-cCCc-----eEEEEEEEcC----eeecCCCCCee
Q 028378           95 TMI-TWSHDGCEVAVEG-SWDNWKT---RIALQRSG-KDFTIMKV-LPSG-----VYQYRFLVDG----LWKYAPDLPST  158 (210)
Q Consensus        95 v~F-~w~~~g~~V~V~G-SFdnW~~---~ipM~rs~-~~f~i~l~-Lp~G-----~YqYKFiVDG----~W~~Dp~~P~~  158 (210)
                      ++| .|.+.+++|.|.. ++++|..   .++|.+.. ++|++.+. +.+|     -+.|+|.|++    +.+.||....+
T Consensus       329 v~F~vWAP~A~~V~L~lyd~~~~~~~~~~~~m~~~~~GvW~v~v~~~~~G~~d~~G~~Y~Y~V~~~~~~~~~~DPYA~al  408 (1111)
T TIGR02102       329 VTLKLWSPSADHVSVVLYDKDDQDKVVGTVELKKGDRGVWEVQLTKENTGIDSLTGYYYHYEITRGGDKVLALDPYAKSL  408 (1111)
T ss_pred             EEEEEECCCCCEEEEEEEeCCCCCCceeeEecccCCCCEEEEEECCcccCcccCCCceEEEEEECCCceEEEeChhheEE
Confidence            678 4899999999998 4556653   57898754 68999886 4432     3688888875    46788866543

Pullulan is an unusual, industrially important polysaccharide in which short alpha-1,4 chains (maltotriose) are connected in alpha-1,6 linkages. Enzymes that cleave alpha-1,6 linkages in pullulan and release maltotriose are called pullulanases although pullulan itself may not be the natural substrate. In contrast, a glycogen debranching enzyme such GlgX, homologous to this family, can release glucose at alpha,1-6 linkages from glycogen first subjected to limit degradation by phosphorylase. Characterized members of this family include a surface-located pullulanase from Streptococcus pneumoniae (PubMed:11083842) and an extracellular bifunctional amylase/pullulanase with C-terminal pullulanase activity (PubMed:8798645).

>PLN02950 4-alpha-glucanotransferase

Probab=92.10  E-value=1.1  Score=46.58  Aligned_cols=56  Identities=18%  Similarity=0.240  Sum_probs=41.9

Q ss_pred             CCceeEEEEEc---CCCCeEEEEeec---CCCcc--ceeeeeeC----CcEEEEEEcCCc-eEEEEEEE
Q 028378           90 GVGIPTMITWS---HDGCEVAVEGSW---DNWKT--RIALQRSG----KDFTIMKVLPSG-VYQYRFLV  145 (210)
Q Consensus        90 ~~~vpv~F~w~---~~g~~V~V~GSF---dnW~~--~ipM~rs~----~~f~i~l~Lp~G-~YqYKFiV  145 (210)
                      ...+.++|.-.   .-|++|+|+|+-   -+|+.  .++|....    ..|++++.|+.| ..+|||++
T Consensus         6 ~~~V~V~F~i~y~T~~GQ~l~VvGs~~~LG~Wd~~kA~~Ls~~~~~d~~~W~~~v~lp~~~~ieYKYv~   74 (909)
T PLN02950          6 LKSVTLSFRIPYYTQWGQSLLVCGSEPLLGSWNVKKGLLLSPVHQGDELVWEGSVSVPEGFSCEYSYYV   74 (909)
T ss_pred             CCcEEEEEEeEEecCCCCeEEEEecchhcCCCCcccceecccccCCCCCeEEEEEEecCCCeEEEEEEE
Confidence            34567777654   368999999988   46986  36785432    269999999987 69999995

>PLN02316 synthase/transferase

Probab=91.57  E-value=1.2  Score=46.99  Aligned_cols=82  Identities=20%  Similarity=0.297  Sum_probs=53.3

Q ss_pred             CCCceeEEEEEcC------CCCeEEEEeecCCCccc--e--eeeee---CC-cEEEEEEcCCceEEEEEEE-cCeeecCC
Q 028378           89 DGVGIPTMITWSH------DGCEVAVEGSWDNWKTR--I--ALQRS---GK-DFTIMKVLPSGVYQYRFLV-DGLWKYAP  153 (210)
Q Consensus        89 ~~~~vpv~F~w~~------~g~~V~V~GSFdnW~~~--i--pM~rs---~~-~f~i~l~Lp~G~YqYKFiV-DG~W~~Dp  153 (210)
                      ...+-++++-|+.      +..+|+|.|.||+|+..  +  .|.+.   ++ -|.+++.+|..-|..-|+. ||.    |
T Consensus       325 ~~aG~~v~lyYN~~~~~L~~~~~v~i~gg~N~W~~~~~~~~~~~~~~~~~g~ww~a~v~vP~~A~~mDfVFsdg~----~  400 (1036)
T PLN02316        325 FKAGDTVKLYYNRSSGPLAHSTEIWIHGGYNNWIDGLSIVEKLVKSEEKDGDWWYAEVVVPERALVLDWVFADGP----P  400 (1036)
T ss_pred             cCCCCEEEEEECCCCCCCCCCCcEEEEEeEcCCCCCCcccceeecccCCCCCEEEEEEecCCCceEEEEEEecCC----c
Confidence            3456678888873      46899999999999953  2  23332   23 4788999999999999987 663    3


Q ss_pred             CCCeeeCCCCCeeEEEEcCCC
Q 028378          154 DLPSTQDDDGNVYNILDLQVN  174 (210)
Q Consensus       154 ~~P~~~D~~G~~NNvI~V~d~  174 (210)
                      ......|++++..=-+.|...
T Consensus       401 ~~~~~yDNn~~~Dyh~~v~~~  421 (1036)
T PLN02316        401 GNARNYDNNGRQDFHAIVPNN  421 (1036)
T ss_pred             ccccccccCCCcceeeecCCC
Confidence            333344444444333334333

>cd02857 CD_pullulan_degrading_enzymes_N_term CD and pullulan-degrading enzymes N-terminus domain

Probab=91.33  E-value=1.7  Score=32.52  Aligned_cols=55  Identities=13%  Similarity=0.149  Sum_probs=36.9

Q ss_pred             CceeEEEEEc-CCCCeEEEEeecCC--Cc-cceeeeeeCC-----cEEEEEEcCCceEEEEEEE
Q 028378           91 VGIPTMITWS-HDGCEVAVEGSWDN--WK-TRIALQRSGK-----DFTIMKVLPSGVYQYRFLV  145 (210)
Q Consensus        91 ~~vpv~F~w~-~~g~~V~V~GSFdn--W~-~~ipM~rs~~-----~f~i~l~Lp~G~YqYKFiV  145 (210)
                      +.+.++|+-. ...++|.|.-.-+.  +. ..++|.+.+.     .|++++.++.|.+.|+|+|
T Consensus        16 ~~v~irlr~~~~~v~~v~l~~~~~~~~~~~~~~~M~~~~~~~~~~~~~~~i~~~~~~~~Y~F~l   79 (116)
T cd02857          16 DTLHIRLRTKKGDVAKVYLRYGDPYDKGEEEEVPMRKDGSDELFDYWEATLPPPTGRLRYYFEL   79 (116)
T ss_pred             CEEEEEEEecCCCccEEEEEEECCCCCCCceEEEEEEeeeCCceeEEEEEEecCCcEEEEEEEE
Confidence            3444444433 34678888655443  22 2578987542     3889998888999999999

Members of this subgroup include: Cyclomaltodextrinase (CDase), maltogenic amylase, and neopullulanase all of which are capable of hydrolyzing all or two of the following three types of substrates: cyclomaltodextrins (CDs), pullulan, and starch. These enzymes hydrolyze CDs and starch to maltose and pullulan to panose by cleavage of alpha-1,4 glycosidic bonds whereas alpha-amylases essentially lack activity on CDs and pullulan. They also catalyze transglycosylation of oligosaccharides to the C3-, C4- or C6-hydroxyl groups of various acceptor sugar molecules. The N-terminus of the CD and pullulan-degrading enzymes may be related to the immunoglobulin and/or fibronectin type III superfamilies. These domains are associated with different types of catalytic domains at either the N-terminal or C-terminal end and may be involved in homodimeric/tetrameric/dodecameric interactions. Members of

>TIGR02103 pullul_strch alpha-1,6-glucosidases, pullulanase-type

Probab=91.19  E-value=1.1  Score=46.68  Aligned_cols=77  Identities=18%  Similarity=0.211  Sum_probs=50.1

Q ss_pred             eEEE-EEcCCCCeEEEEeecCCCc--cceeeeee--CCcEEEEEE-cCCceEEEEEEEc------Ce----eecCCCCCe
Q 028378           94 PTMI-TWSHDGCEVAVEGSWDNWK--TRIALQRS--GKDFTIMKV-LPSGVYQYRFLVD------GL----WKYAPDLPS  157 (210)
Q Consensus        94 pv~F-~w~~~g~~V~V~GSFdnW~--~~ipM~rs--~~~f~i~l~-Lp~G~YqYKFiVD------G~----W~~Dp~~P~  157 (210)
                      -|+| .|.+.+++|.|....++|.  ..++|.+.  .+.|++.+. +..|. .|+|.|+      |+    .+.||..-.
T Consensus       136 gv~FrVWAPtA~~V~L~Ly~~~~~~~~~~~M~~~~~~GVWsv~v~g~~~G~-~Y~Y~V~v~~p~~G~v~~~~v~DPYA~a  214 (898)
T TIGR02103       136 GVTFRLWAPTAQQVKLHIYSASKKVETTLPMTRDSTSGVWSAEGGSSWKGA-YYRYEVTVYHPSTGKVETYLVTDPYSVS  214 (898)
T ss_pred             cEEEEEECCCCCEEEEEEEcCCCCccceEeCccCCCCCEEEEEECcCCCCC-EeEEEEEEecCCCCeECCeEEeCcCcce
Confidence            4678 4999999999997666653  24789875  568999885 44564 3666664      53    478887764


Q ss_pred             eeCCCCCeeEEEEcC
Q 028378          158 TQDDDGNVYNILDLQ  172 (210)
Q Consensus       158 ~~D~~G~~NNvI~V~  172 (210)
                      +. ..|...=|+++.
T Consensus       215 ls-~n~~~S~VvDl~  228 (898)
T TIGR02103       215 LS-ANSEYSQVVDLN  228 (898)
T ss_pred             Ec-CCCCCeEEeCCc
Confidence            42 233333345544

Members of this protein family include secreted (or membrane-anchored) pullulanases of Gram-negative bacteria and pullulanase-type starch debranching enzymes of plants. Both enzymes hydrolyze alpha-1,6 glycosidic linkages. Pullulan is an unusual, industrially important polysaccharide in which short alpha-1,4 chains (maltotriose) are connected in alpha-1,6 linkages. Enzymes that cleave alpha-1,6 linkages in pullulan and release maltotriose are called pullulanases although pullulan itself may not be the natural substrate. This family is closely homologous to, but architecturally different from, the Gram-positive pullulanases of Gram-positive bacteria (TIGR02102).

>PRK03705 glycogen debranching enzyme; Provisional

Probab=90.87  E-value=0.84  Score=45.84  Aligned_cols=62  Identities=19%  Similarity=0.262  Sum_probs=45.1

Q ss_pred             EEE-EEcCCCCeEEEEeecCCCc--cceeeeee-CCcEEEEEE-cCCceEEEEEEEcCee-------------ecCCCCC
Q 028378           95 TMI-TWSHDGCEVAVEGSWDNWK--TRIALQRS-GKDFTIMKV-LPSGVYQYRFLVDGLW-------------KYAPDLP  156 (210)
Q Consensus        95 v~F-~w~~~g~~V~V~GSFdnW~--~~ipM~rs-~~~f~i~l~-Lp~G~YqYKFiVDG~W-------------~~Dp~~P  156 (210)
                      |.| .|.+.+++|.|.. |+++.  ..++|.+. ++.|.+.+. +.+|. .|+|.|+|.|             ++||.+.
T Consensus        21 ~~F~vwAP~A~~V~L~l-~~~~~~~~~~~m~~~~~gvW~~~v~~~~~G~-~Y~yrv~g~~~p~~g~~~~~~~~~~DPYA~   98 (658)
T PRK03705         21 VNFTLFSAHAERVELCV-FDENGQEQRYDLPARSGDIWHGYLPGARPGL-RYGYRVHGPWQPAQGHRFNPAKLLIDPCAR   98 (658)
T ss_pred             EEEEEECCCCCEEEEEE-EcCCCCeeeEeeeeccCCEEEEEECCCCCCC-EEEEEEccccCcccCcccCCCcEecCcCce
Confidence            688 5889999999997 77653  35788765 568999875 55665 5999998742             5777665


Q ss_pred             ee
Q 028378          157 ST  158 (210)
Q Consensus       157 ~~  158 (210)
                      .+
T Consensus        99 ~~  100 (658)
T PRK03705         99 QV  100 (658)
T ss_pred             EE
Confidence            43

>PLN02316 synthase/transferase

Probab=89.97  E-value=1.8  Score=45.89  Aligned_cols=58  Identities=17%  Similarity=0.350  Sum_probs=45.2

Q ss_pred             CCCCceeEEEEEcC------CCCeEEEEeecCCCccc------eeeeeeCC-c-EEEEEEcCCceEEEEEEE
Q 028378           88 GDGVGIPTMITWSH------DGCEVAVEGSWDNWKTR------IALQRSGK-D-FTIMKVLPSGVYQYRFLV  145 (210)
Q Consensus        88 ~~~~~vpv~F~w~~------~g~~V~V~GSFdnW~~~------ipM~rs~~-~-f~i~l~Lp~G~YqYKFiV  145 (210)
                      -.+.+-+|++-|++      +..+|++.|+||+|+..      +.|++.++ . +.+++.+|...|-.-|+-
T Consensus       486 ~~~aG~~v~v~Yn~~~t~l~~~~ev~~~g~~NrWth~~~~~~~~~m~~~~~g~~~~a~v~vP~da~~mdfvF  557 (1036)
T PLN02316        486 EVQAGTTVTVLYNPANTVLNGKPEVWFRGSFNRWTHRLGPLPPQKMVPADNGSHLKATVKVPLDAYMMDFVF  557 (1036)
T ss_pred             CCCCCCEEEEEECCCCCcCCCCceEEEEccccCcCCCCCCCCceeeeecCCCceEEEEEEccccceEEEEEE
Confidence            34557789999985      35799999999999964      34666543 3 588999999999888887

>PF02903 Alpha-amylase_N: Alpha amylase, N-terminal ig-like domain; InterPro: IPR004185 O-Glycosyl hydrolases 3

Probab=88.47  E-value=2.6  Score=32.61  Aligned_cols=64  Identities=16%  Similarity=0.226  Sum_probs=41.8

Q ss_pred             CCceeEEEEEc-CCCCeEEEE-eecCCC----c-cceeeeeeC--C---cEEEEEEcCCceEEEEEEE--cCe-eecCC
Q 028378           90 GVGIPTMITWS-HDGCEVAVE-GSWDNW----K-TRIALQRSG--K---DFTIMKVLPSGVYQYRFLV--DGL-WKYAP  153 (210)
Q Consensus        90 ~~~vpv~F~w~-~~g~~V~V~-GSFdnW----~-~~ipM~rs~--~---~f~i~l~Lp~G~YqYKFiV--DG~-W~~Dp  153 (210)
                      ...+.++|+=. ...++|.|. |+-.+|    . ...+|+|..  +   .|++++.++..+.+|.|.|  +|+ +.++.
T Consensus        20 ~~~l~IRLRt~k~Dv~~V~l~~~d~~~~~~~~~~~~~~M~k~~~~~~fDyye~~l~~~~~r~~Y~F~l~~~~~~~~y~~   98 (120)
T PF02903_consen   20 GDTLHIRLRTAKNDVEKVFLVYGDPYEEEGKWTYKSVEMEKIASDELFDYYEATLKLPEKRLRYYFELEDGGETYYYGE   98 (120)
T ss_dssp             TTEEEEEEEEETTT-SEEEEEEEETTSETTCECEEEEEEEEEEEESSEEEEEEEEE-TTSEEEEEEEEEETTEEEEEET
T ss_pred             CCEEEEEEEecCCCCCEEEEEECCCccccccceEEEEEeEEEEeCCCeEEEEEEEECCCCeEEEEEEEEeCCEEEEEeC
Confidence            44566666554 467899985 677666    2 236888742  2   4899999999999999988  344 44443

2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Enzymes containing this domain belong to family 13 (GH13 from CAZY) of the glycosyl hydrolases. The maltogenic alpha-amylase is an enzyme which catalyses hydrolysis of (1-4)-alpha-D-glucosidic linkages in polysaccharides so as to remove successive alpha-maltose residues from the non-reducing ends of the chains in the conversion of starch to maltose. Other enzymes include neopullulanase, which hydrolyses pullulan to panose, and cyclomaltodextrinase, which hydrolyses cyclodextrins.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 1J0J_A 1J0H_A 1J0I_A 1J0K_A 1EA9_C 1SMA_A 1GVI_B 1WZK_B 1VFM_B 3A6O_A ....

>PRK14510 putative bifunctional 4-alpha-glucanotransferase/glycogen debranching enzyme; Provisional

Probab=84.84  E-value=3.3  Score=44.48  Aligned_cols=54  Identities=24%  Similarity=0.326  Sum_probs=41.0

Q ss_pred             eEEE-EEcCCCCeEEEEeecCCCcc----ceeee-eeCCcEEEEEE-cCCceEEEEEEEcCee
Q 028378           94 PTMI-TWSHDGCEVAVEGSWDNWKT----RIALQ-RSGKDFTIMKV-LPSGVYQYRFLVDGLW  149 (210)
Q Consensus        94 pv~F-~w~~~g~~V~V~GSFdnW~~----~ipM~-rs~~~f~i~l~-Lp~G~YqYKFiVDG~W  149 (210)
                      -|+| .|+..+++|.|. -|++|..    +++|. +.++.|.+.+. +.+|. .|+|.|+|.+
T Consensus        24 gv~F~v~ap~A~~V~L~-lf~~~~~~~~~~~~l~~~~g~vW~~~i~~~~~g~-~Ygyrv~g~~   84 (1221)
T PRK14510         24 GVNLALFSGAAERVEFC-LFDLWGVREEARIKLPGRTGDVWHGFIVGVGPGA-RYGNRQEGPG   84 (1221)
T ss_pred             eEEEEEECCCCCEEEEE-EEECCCCCeeEEEECCCCcCCEEEEEEccCCCCc-EEEEEeccCC
Confidence            3788 478899999997 8888863    35664 45678988765 77887 6999999854

>PF01357 Pollen_allerg_1: Pollen allergen; InterPro: IPR007117 Expansins are unusual proteins that mediate cell wall extension in plants []

Probab=84.65  E-value=2.8  Score=31.03  Aligned_cols=59  Identities=25%  Similarity=0.329  Sum_probs=39.3

Q ss_pred             CceeEEEEEcCCC---CeEEEEeec-CCCccceeeeee-CCcEEEEEEcCCceEEEEEEE-c-CeeecC
Q 028378           91 VGIPTMITWSHDG---CEVAVEGSW-DNWKTRIALQRS-GKDFTIMKVLPSGVYQYRFLV-D-GLWKYA  152 (210)
Q Consensus        91 ~~vpv~F~w~~~g---~~V~V~GSF-dnW~~~ipM~rs-~~~f~i~l~Lp~G~YqYKFiV-D-G~W~~D  152 (210)
                      .-.-++|....+.   .+|.|.++= .+|.   +|.|+ +..|.+.-.++.|-+.+|+-. | |+++..
T Consensus        12 ~~l~v~v~n~gG~gdi~~Vevk~~~s~~W~---~m~r~wGa~W~~~~~~~~~pls~Rvts~~~G~~vv~   77 (82)
T PF01357_consen   12 YYLAVLVKNVGGDGDIKAVEVKQSGSGNWI---PMKRSWGAVWQIDSNPPGGPLSFRVTSGDSGQTVVA   77 (82)
T ss_dssp             TEEEEEEEECCTTS-EEEEEEEETTSSS-E---E-EEECTTEEEEE-SS--SSEEEEEEETTTSEEEEE
T ss_pred             cEEEEEEEEcCCCccEEEEEEEeCCCCCce---EeecCcCceEEECCCCcCCCEEEEEEEcCCCeEEEE
Confidence            3456677777543   578998443 5585   69998 458998777888899999988 7 887764

They are believed to act as a sort of chemical grease, allowing polymers to slide past one another by disrupting non-covalent hydrogen bonds that hold many wall polymers to one another. This process is not degradative and hence does not weaken the wall, which could otherwise rupture under internal pressure during growth. Sequence comparisons indicate at least four distinct expansin cDNAs in rice and at least six in Arabidopsis. The proteins are highly conserved in size and sequence (75-95% amino acid sequence similarity between any pairwise comparison), and phylogenetic trees indicate that this multigene family formed before the evolutionary divergence of monocotyledons and dicotyledons []. Sequence and motif analyses show no similarities to known functional domains that might account for expansin action on wall extension. It is thought that several highly-conserved tryptophans may function in expansin binding to cellulose, or other glycans. The high conservation of the family indicates that the mechanism by which expansins promote wall extensin tolerates little variation in protein structure. Grass pollens, such as pollen from timothy grass, represent a major cause of type I allergy []. Interestingly, expansins share a high degree of sequence similarity with the Lol p I family of allergens. This entry represents the C-terminal domain.; PDB: 2VXQ_A 1WHP_A 1BMW_A 1WHO_A 2HCZ_X 2JNZ_A 3FT9_A 3FT1_C 1N10_B.

>PLN02877 alpha-amylase/limit dextrinase

Probab=83.36  E-value=3  Score=43.89  Aligned_cols=63  Identities=16%  Similarity=0.248  Sum_probs=41.7

Q ss_pred             eEEE-EEcCCCCeEEEEeecCCCc---c--ceeeeeeCCcEEEEEEc-CCceEEEEEEEc------Ce----eecCCCCC
Q 028378           94 PTMI-TWSHDGCEVAVEGSWDNWK---T--RIALQRSGKDFTIMKVL-PSGVYQYRFLVD------GL----WKYAPDLP  156 (210)
Q Consensus        94 pv~F-~w~~~g~~V~V~GSFdnW~---~--~ipM~rs~~~f~i~l~L-p~G~YqYKFiVD------G~----W~~Dp~~P  156 (210)
                      -|+| .|.+.+++|.|.- |+++.   .  .++|.+.++.|++.+.- ..| ..|+|.|+      |+    .+.||..-
T Consensus       223 g~~F~VWAPtA~~V~L~l-yd~~~~~~~~~~~~m~~~~GVWsv~v~~~~~G-~~Y~Y~V~v~~p~~g~~~~~~v~DPYA~  300 (970)
T PLN02877        223 AVSLYLWAPTAQAVSLCL-YDDPRGKEPLEIVQLKESNGVWSVEGPKSWEG-CYYVYEVSVYHPSTGKVETCYANDPYAR  300 (970)
T ss_pred             CEEEEEECCCCCEEEEEE-ecCCCCccceEEecccCCCCEEEEEeccCCCC-CeeEEEEeecccCCCcccccccCCccce
Confidence            4678 5999999999984 56553   2  24677667799998763 355 34666665      32    35677665


Q ss_pred             ee
Q 028378          157 ST  158 (210)
Q Consensus       157 ~~  158 (210)
                      .+
T Consensus       301 al  302 (970)
T PLN02877        301 GL  302 (970)
T ss_pred             EE
Confidence            33

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	210
2f15_A	96	Glycogen-Binding Domain Of The Amp-Activated Protei		3e-13
1z0m_A	96	The Glycogen-Binding Domain Of The Amp-Activated Pr		1e-10
1z0n_A	96	The Glycogen-Binding Domain Of The Amp-Activated Pr		5e-10
2qlv_B	252	Crystal Structure Of The Heterotrimer Core Of The S		3e-06

>pdb|2F15|A Chain A, Glycogen-Binding Domain Of The Amp-Activated Protein Kinase Beta2 Subunit Length = 96

Iteration: 1
 Score = 71.2 bits (173), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 32/79 (40%), Positives = 47/79 (59%)
Query: 94  PTMITWSHDGCEVAVEGSWDNWKTRIALQRSGKDFTIMKVLPSGVYQYRFLVDGLWKYAP 153
           PT+I WS  G EV + GS++NW T+I L +S  DF  +  LP G +QY+F VDG W + P
Sbjct: 11  PTVIRWSEGGKEVFISGSFNNWSTKIPLIKSHNDFVAILDLPEGEHQYKFFVDGQWVHDP 70
Query: 154 DLPSTQDDDGNVYNILDLQ 172
             P      G + N++ ++
Sbjct: 71  SEPVVTSQLGTINNLIHVK 89

>pdb|1Z0M|A Chain A, The Glycogen-Binding Domain Of The Amp-Activated Protein Kinase Beta1 Subunit Length = 96

Iteration: 1
 Score = 62.8 bits (151), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 30/79 (37%), Positives = 46/79 (58%), Gaps = 1/79 (1%)
Query: 94  PTMITWSHDGCEVAVEGSWDNWKTRIALQRSGKDFTIMKVLPSGVYQYRFLVDGLWKYAP 153
           PT+  W+  G EV + GS++NW +++ L RS  +F  +  LP G +QY+F VDG W + P
Sbjct: 12  PTVFRWTGGGKEVYLSGSFNNW-SKLPLTRSQNNFVAILDLPEGEHQYKFFVDGQWTHDP 70
Query: 154 DLPSTQDDDGNVYNILDLQ 172
             P      G V NI+ ++
Sbjct: 71  SEPIVTSQLGTVNNIIQVK 89

>pdb|1Z0N|A Chain A, The Glycogen-Binding Domain Of The Amp-Activated Protein Kinase Length = 96

Iteration: 1
 Score = 60.8 bits (146), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 29/79 (36%), Positives = 45/79 (56%), Gaps = 1/79 (1%)
Query: 94  PTMITWSHDGCEVAVEGSWDNWKTRIALQRSGKDFTIMKVLPSGVYQYRFLVDGLWKYAP 153
           PT+  W+  G EV + GS++NW +++   RS  +F  +  LP G +QY+F VDG W + P
Sbjct: 12  PTVFRWTGGGKEVYLSGSFNNW-SKLPXTRSQNNFVAILDLPEGEHQYKFFVDGQWTHDP 70
Query: 154 DLPSTQDDDGNVYNILDLQ 172
             P      G V NI+ ++
Sbjct: 71  SEPIVTSQLGTVNNIIQVK 89

>pdb|2QLV|B Chain B, Crystal Structure Of The Heterotrimer Core Of The S. Cerevisiae Ampk Homolog Snf1 Length = 252

Iteration: 1
 Score = 48.5 bits (114), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 25/84 (29%), Positives = 44/84 (52%), Gaps = 5/84 (5%)
Query: 93  IPTMITWSHDGCEVAVEGSWDNWKTRIAL----QRSGKDFTIMKVLPSGVYQYRFLVDGL 148
           +P  I W   G +V V GS+  W+  I L      +G     +++LP G +++RF+VD  
Sbjct: 4   VPVEIRWQQGGSKVYVTGSFTKWRKMIGLIPDSDNNGSFHVKLRLLP-GTHRFRFIVDNE 62
Query: 149 WKYAPDLPSTQDDDGNVYNILDLQ 172
            + +  LP+  D  GN  N ++++
Sbjct: 63  LRVSDFLPTATDQMGNFVNYIEVR 86

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	210
1z0n_A	96	5'-AMP-activated protein kinase, beta-1 subunit; b	1e-24
2qlv_B	252	Protein SIP2, protein SPM2; heterotrimer, ATP-bind	4e-23
3nme_A	294	Ptpkis1 protein, SEX4 glucan phosphatase; dual spe	2e-19
4aee_A	696	Alpha amylase, catalytic region; hydrolase, hypert	7e-07

>1z0n_A 5'-AMP-activated protein kinase, beta-1 subunit; beta sandwich, sugar binding protein; HET: BCD; 1.49A {Rattus norvegicus} SCOP: b.1.18.21 PDB: 1z0m_A* 2f15_A Length = 96

 Score = 91.9 bits (228), Expect = 1e-24
 Identities = 29/88 (32%), Positives = 47/88 (53%), Gaps = 1/88 (1%)

Query: 85  EDMGDGVGIPTMITWSHDGCEVAVEGSWDNWKTRIALQRSGKDFTIMKVLPSGVYQYRFL 144
            +       PT+  W+  G EV + GS++NW +++ + RS  +F  +  LP G +QY+F 
Sbjct: 3   NEKAPAQARPTVFRWTGGGKEVYLSGSFNNW-SKLPMTRSQNNFVAILDLPEGEHQYKFF 61

Query: 145 VDGLWKYAPDLPSTQDDDGNVYNILDLQ 172
           VDG W + P  P      G V NI+ ++
Sbjct: 62  VDGQWTHDPSEPIVTSQLGTVNNIIQVK 89

>2qlv_B Protein SIP2, protein SPM2; heterotrimer, ATP-binding, carbohydrate metabolism, kinase, membrane, nucleotide-binding, nucleus; 2.60A {Saccharomyces cerevisiae} SCOP: b.1.18.21 d.353.1.1 Length = 252

 Score = 92.4 bits (228), Expect = 4e-23
 Identities = 24/83 (28%), Positives = 40/83 (48%), Gaps = 3/83 (3%)

Query: 93  IPTMITWSHDGCEVAVEGSWDNWKTRIALQRSGK---DFTIMKVLPSGVYQYRFLVDGLW 149
           +P  I W   G +V V GS+  W+  I L         F +   L  G +++RF+VD   
Sbjct: 4   VPVEIRWQQGGSKVYVTGSFTKWRKMIGLIPDSDNNGSFHVKLRLLPGTHRFRFIVDNEL 63

Query: 150 KYAPDLPSTQDDDGNVYNILDLQ 172
           + +  LP+  D  GN  N ++++
Sbjct: 64  RVSDFLPTATDQMGNFVNYIEVR 86

>3nme_A Ptpkis1 protein, SEX4 glucan phosphatase; dual specificity phosphatase, carbohydrate BIND hydrolase; 2.40A {Arabidopsis thaliana} Length = 294

 Score = 83.3 bits (205), Expect = 2e-19
 Identities = 21/104 (20%), Positives = 39/104 (37%), Gaps = 3/104 (2%)

Query: 70  MQIPNLSWMQTSSGYEDMGDGVGIPTMITWSHDGCEVAVEGSWDNWKTRIALQRSGKD-- 127
              P L  ++ ++     G      T+         V + G    W  RI L        
Sbjct: 148 SCFPKLDAIRNATIDILTGLKRKTVTLTLKDKGFSRVEISGLDIGWGQRIPLTLGKGTGF 207

Query: 128 FTIMKVLPSGVYQYRFLVDGLWKYAPDLPSTQDD-DGNVYNILD 170
           + + + LP G ++Y++++DG W +    P    + DG+  N   
Sbjct: 208 WILKRELPEGQFEYKYIIDGEWTHNEAEPFIGPNKDGHTNNYAK 251

>4aee_A Alpha amylase, catalytic region; hydrolase, hyperthermostable, cyclodextrin hydrolase, GH13; 2.28A {Staphylothermus marinus} Length = 696

 Score = 47.9 bits (114), Expect = 7e-07
 Identities = 17/109 (15%), Positives = 35/109 (32%), Gaps = 7/109 (6%)

Query: 78  MQTSSGYEDMGDG----VGIPTMITWSHDGCEVAVEGSWDNW-KTRIALQRSGKDFTIMK 132
           M    G E  G G      +     W      + + G + +     + L++  +   +  
Sbjct: 1   MYKIIGREIYGKGRKGRYIVKFTRHWPQYAKNIYLIGEFTSLYPGFVKLRKIEEQGIVYL 60

Query: 133 VLPSGVYQYRFLVDGLWK--YAPDLPSTQDDDGNVYNILDLQVNITFIP 179
            L  G Y Y F +D  ++    PD    +    + +      ++   I 
Sbjct: 61  KLWPGEYGYGFQIDNDFENVLDPDNEEKKCVHTSFFPEYKKCLSKLVIK 109

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	210
1z0n_A	96	5'-AMP-activated protein kinase, beta-1 subunit; b	99.94
2qlv_B	252	Protein SIP2, protein SPM2; heterotrimer, ATP-bind	99.92
3nme_A	294	Ptpkis1 protein, SEX4 glucan phosphatase; dual spe	99.9
4aee_A	696	Alpha amylase, catalytic region; hydrolase, hypert	99.69
4aef_A	645	Neopullulanase (alpha-amylase II); hydrolase, ther	99.3
2z0b_A	131	GDE5, KIAA1434, putative glycerophosphodiester pho	98.48
3c8d_A	403	Enterochelin esterase; alpha-beta-alpha sandwich,	98.12
1ac0_A	108	Glucoamylase; hydrolase, starch binding domain; HE	98.08
1m7x_A	617	1,4-alpha-glucan branching enzyme; alpha/beta barr	97.66
3aml_A	755	OS06G0726400 protein; starch-branching, transferas	97.52
3k1d_A	722	1,4-alpha-glucan-branching enzyme; mycobacterium t	97.51
2laa_A	104	Beta/alpha-amylase; SBD, CBM25, hydrolase; NMR {Pa	97.02
2bhu_A	602	Maltooligosyltrehalose trehalohydrolase; alpha-amy	96.63
3vgf_A	558	Malto-oligosyltrehalose trehalohydrolase; alpha/be	96.61
1bf2_A	750	Isoamylase; hydrolase, glycosidase, debranching en	96.54
2vn4_A	599	Glucoamylase; hydrolase, carbohydrate binding, gly	96.48
1wzl_A	585	Alpha-amylase II; pullulan, GH-13, alpha-amylase f	96.46
2wsk_A	657	Glycogen debranching enzyme; carbohydrate metaboli	96.42
2vr5_A	718	Glycogen operon protein GLGX; hydrolase, glycosida	96.28
3bmv_A	683	Cyclomaltodextrin glucanotransferase; glycosidase,	96.06
1cyg_A	680	Cyclodextrin glucanotransferase; glycosyltransfera	96.04
1j0h_A	588	Neopullulanase; beta-alpha-barrels, hydrolase; 1.9	96.02
1d3c_A	686	Cyclodextrin glycosyltransferase; alpha-amylase, p	95.81
1qho_A	686	Alpha-amylase; glycoside hydrolase, starch degrada	95.8
2e8y_A	718	AMYX protein, pullulanase; multiple domain, beta-a	95.6
4aio_A	884	Limit dextrinase; hydrolase, pullulanase, glycosid	95.24
1ea9_C	583	Cyclomaltodextrinase; hydrolase, glycosidase; 3.2A	95.16
1vem_A	516	Beta-amylase; beta-alpha-barrels, optimum PH, hydr	95.03
2fhf_A	1083	Pullulanase; multiple domain, beta-alpha-barrel, a	95.03
2ya0_A	714	Putative alkaline amylopullulanase; hydrolase, gly	94.44
3faw_A	877	Reticulocyte binding protein; TIM barrel, beta bar	94.39
3m07_A	618	Putative alpha amylase; IDP00968, csgid, structura	94.37
2wan_A	921	Pullulanase; hydrolase, glycoside hydrolase, polys	94.31
1ji1_A	637	Alpha-amylase I; beta/alpha barrel, hydrolase; 1.6	93.74
1gcy_A	527	Glucan 1,4-alpha-maltotetrahydrolase; beta-alpha-b	93.33
2wan_A	921	Pullulanase; hydrolase, glycoside hydrolase, polys	92.2
2ya1_A	1014	Putative alkaline amylopullulanase; hydrolase, gly	91.93
2c3v_A	102	Alpha-amylase G-6; carbohydrate-binding module, st	88.22
4fch_A	221	Outer membrane protein SUSE; starch binding, extra	82.05

>1z0n_A 5'-AMP-activated protein kinase, beta-1 subunit; beta sandwich, sugar binding protein; HET: BCD; 1.49A {Rattus norvegicus} SCOP: b.1.18.21 PDB: 1z0m_A* 2f15_A

Probab=99.94  E-value=1.1e-26  Score=175.77  Aligned_cols=89  Identities=33%  Similarity=0.686  Sum_probs=78.9

Q ss_pred             CCCCCCCceeEEEEEcCCCCeEEEEeecCCCccceeeeeeCCcEEEEEEcCCceEEEEEEEcCeeecCCCCCeeeCCCCC
Q 028378           85 EDMGDGVGIPTMITWSHDGCEVAVEGSWDNWKTRIALQRSGKDFTIMKVLPSGVYQYRFLVDGLWKYAPDLPSTQDDDGN  164 (210)
Q Consensus        85 ~~~~~~~~vpv~F~w~~~g~~V~V~GSFdnW~~~ipM~rs~~~f~i~l~Lp~G~YqYKFiVDG~W~~Dp~~P~~~D~~G~  164 (210)
                      ++++++++++|+|+|.+.|++|+|+|+||+|+ +++|+|+++.|++++.|++|.|+|||+|||+|++||.++++.|..|+
T Consensus         3 ~~~~~~~~~~v~F~wap~a~~V~v~GdFn~W~-~~~m~~~~g~w~~~v~l~~G~~~YKf~VdG~~~~DP~~~~~~d~~G~   81 (96)
T 1z0n_A            3 NEKAPAQARPTVFRWTGGGKEVYLSGSFNNWS-KLPMTRSQNNFVAILDLPEGEHQYKFFVDGQWTHDPSEPIVTSQLGT   81 (96)
T ss_dssp             -------CEEEEEEECSCCSCEEEEEGGGTTC-CEECEEETTEEEEEEEECSEEEEEEEEETTEEECCTTSCEEECTTSC
T ss_pred             cccCCCCceEEEEEECCCCcEEEEEEEeCCCc-cccCEECCCEEEEEEEccCCCEEEEEEECCeEEcCCCCCeEECCCCC
Confidence            35577889999999999999999999999999 79999988899999999999999999999999999999999999999


Q ss_pred             eeEEEEcCCC
Q 028378          165 VYNILDLQVN  174 (210)
Q Consensus       165 ~NNvI~V~d~  174 (210)
                      .||+|.|.+.
T Consensus        82 ~Nnvi~V~~~   91 (96)
T 1z0n_A           82 VNNIIQVKKT   91 (96)
T ss_dssp             EEEEEEECSC
T ss_pred             EeEEEEEcCC
Confidence            9999999754

>2qlv_B Protein SIP2, protein SPM2; heterotrimer, ATP-binding, carbohydrate metabolism, kinase, membrane, nucleotide-binding, nucleus; 2.60A {Saccharomyces cerevisiae} SCOP: b.1.18.21 d.353.1.1

Probab=99.92  E-value=2e-25  Score=195.16  Aligned_cols=83  Identities=29%  Similarity=0.578  Sum_probs=78.4

Q ss_pred             CceeEEEEEcCCCCeEEEEeecCCCccceeeeee---CCcEEEEEEcCCceEEEEEEEcCeeecCCCCCeeeCCCCCeeE
Q 028378           91 VGIPTMITWSHDGCEVAVEGSWDNWKTRIALQRS---GKDFTIMKVLPSGVYQYRFLVDGLWKYAPDLPSTQDDDGNVYN  167 (210)
Q Consensus        91 ~~vpv~F~w~~~g~~V~V~GSFdnW~~~ipM~rs---~~~f~i~l~Lp~G~YqYKFiVDG~W~~Dp~~P~~~D~~G~~NN  167 (210)
                      ..+||+|+|.++|++|+|+|+|++|+.+++|+|+   ++.|++++.|++|+|+|||+|||+|++||+++++.|+.|+.||
T Consensus         2 ~~vpv~f~W~~~a~~V~V~GsF~~W~~~~~m~k~~~~~G~f~~tv~LppG~y~YKFiVDG~w~~Dp~~p~~~d~~G~~nN   81 (252)
T 2qlv_B            2 LMVPVEIRWQQGGSKVYVTGSFTKWRKMIGLIPDSDNNGSFHVKLRLLPGTHRFRFIVDNELRVSDFLPTATDQMGNFVN   81 (252)
T ss_dssp             CCEEEEEEECSCCSCEEEEEGGGTTSSCEECEECSSSTTCEEEEEEECSEEEEEEEEETTEEECCTTSCEEBCSSCCCEE
T ss_pred             CcEEEEEEEeCCCcEEEEEEEeCCCcCcccceeccCCCCcEEEEEECCCCEEEEEEEECCEEEeCCCCCEEecCCCcCcc
Confidence            4689999999999999999999999988999984   2579999999999999999999999999999999999999999


Q ss_pred             EEEcCC
Q 028378          168 ILDLQV  173 (210)
Q Consensus       168 vI~V~d  173 (210)
                      +|.|.+
T Consensus        82 vi~V~~   87 (252)
T 2qlv_B           82 YIEVRQ   87 (252)
T ss_dssp             EEEECC
T ss_pred             eeeccC
Confidence            999987

>3nme_A Ptpkis1 protein, SEX4 glucan phosphatase; dual specificity phosphatase, carbohydrate BIND hydrolase; 2.40A {Arabidopsis thaliana}

Probab=99.90  E-value=6.3e-24  Score=187.58  Aligned_cols=83  Identities=22%  Similarity=0.403  Sum_probs=77.7

Q ss_pred             CceeEEEEEcC-CCCeEEEEeecCCCccceeeeee--CCcEEEEEEcCCceEEEEEEEcCeeecCCCCCee-eCCCCCee
Q 028378           91 VGIPTMITWSH-DGCEVAVEGSWDNWKTRIALQRS--GKDFTIMKVLPSGVYQYRFLVDGLWKYAPDLPST-QDDDGNVY  166 (210)
Q Consensus        91 ~~vpv~F~w~~-~g~~V~V~GSFdnW~~~ipM~rs--~~~f~i~l~Lp~G~YqYKFiVDG~W~~Dp~~P~~-~D~~G~~N  166 (210)
                      .+.+|+|+|.. ++++|+|+||||||+.+++|+|.  ++.|++++.|++|+|+|||+|||+|++||++|.+ .|+.|++|
T Consensus       168 ~k~~v~f~~~~~~~~~V~v~GsF~~W~~~~~l~k~~~~g~~~~~~~L~~G~y~YkFiVDG~w~~d~~~~~~~~d~~G~~n  247 (294)
T 3nme_A          168 KRKTVTLTLKDKGFSRVEISGLDIGWGQRIPLTLGKGTGFWILKRELPEGQFEYKYIIDGEWTHNEAEPFIGPNKDGHTN  247 (294)
T ss_dssp             CCEEEEEEEECSSCSCEEEEETTTEEEEEEECEECTTTCEEEEEEEECSEEEEEEEEETTEEECCTTSCEECSCTTSCCE
T ss_pred             ccccceeeeccCCCCEEEEEEeccCCCCcccceEcCCCCEEEEEEECCCceEEEEEEECCEEeeCCCCCeeeECCCCCEe
Confidence            46899999998 88999999999999988999994  5789999999999999999999999999999965 79999999


Q ss_pred             EEEEcCC
Q 028378          167 NILDLQV  173 (210)
Q Consensus       167 NvI~V~d  173 (210)
                      |+|.|.+
T Consensus       248 n~~~v~~  254 (294)
T 3nme_A          248 NYAKVVD  254 (294)
T ss_dssp             EEEEECC
T ss_pred             EEEEECC
Confidence            9999997

>4aee_A Alpha amylase, catalytic region; hydrolase, hyperthermostable, cyclodextrin hydrolase, GH13; 2.28A {Staphylothermus marinus}

Probab=99.69  E-value=6.4e-17  Score=156.29  Aligned_cols=104  Identities=13%  Similarity=0.057  Sum_probs=79.7

Q ss_pred             CceeEEEEEcC--CCCeEEEEeecCCCcc-ceeeeeeCCcEEEEEEcCCceEEEEEEEcCeee--cCCCCC---eeeCCC
Q 028378           91 VGIPTMITWSH--DGCEVAVEGSWDNWKT-RIALQRSGKDFTIMKVLPSGVYQYRFLVDGLWK--YAPDLP---STQDDD  162 (210)
Q Consensus        91 ~~vpv~F~w~~--~g~~V~V~GSFdnW~~-~ipM~rs~~~f~i~l~Lp~G~YqYKFiVDG~W~--~Dp~~P---~~~D~~  162 (210)
                      ..++|+|++..  +|++|+|+||||+|++ ..+|+|+++.|++++.||+|+|||||+|||+|+  +||++|   ++.|..
T Consensus        16 ~~~~v~f~~~~~~~~~~v~~~G~Fn~w~~~~~~~~~~~~~~~~~~~L~~g~~~y~f~vdg~~~~~~d~~~~~~~y~~~~~   95 (696)
T 4aee_A           16 GRYIVKFTRHWPQYAKNIYLIGEFTSLYPGFVKLRKIEEQGIVYLKLWPGEYGYGFQIDNDFENVLDPDNEEKKCVHTSF   95 (696)
T ss_dssp             EEEEEEEEEECCTTCSCEEEEETTSCSSTTSCBCEEETTEEEEEEEECSEEEEEEEEETTCCSCCCCTTCCCEEEEECSS
T ss_pred             CcEEEEEEEECCCCCcEEEEEEecCCCCCCCcceEecCCeEEEEEEcCCceEEEEEEECCEEeecCCCCCCcccccccCC
Confidence            45788888775  7999999999999975 579999988999999999999999999999999  889888   467899


Q ss_pred             CCeeEEEEcCCCccccchhhhhhhhhccCcCcc
Q 028378          163 GNVYNILDLQVNITFIPLYKYACFIVAVTCHSL  195 (210)
Q Consensus       163 G~~NNvI~V~d~vpe~p~~~~~~~~~~~tp~s~  195 (210)
                      |..|+|.. ...+-+.|..+..++....+++-+
T Consensus        96 g~~n~~~~-~~~~~~~~~~~~~~i~h~~~~~y~  127 (696)
T 4aee_A           96 FPEYKKCL-SKLVIKEPDNPLDKIIHIEESGFI  127 (696)
T ss_dssp             CTTSEEEE-EEEEECCCSSGGGGCBCCSSTTTE
T ss_pred             ccccceec-cceEEEcCCCCccceEeCCCCCce
Confidence            99999842 223222332233444444444333

>4aef_A Neopullulanase (alpha-amylase II); hydrolase, thermostability, high temperature; 2.34A {Pyrococcus furiosus}

Probab=99.30  E-value=5.1e-12  Score=120.69  Aligned_cols=65  Identities=25%  Similarity=0.568  Sum_probs=59.3

Q ss_pred             eeEEEEEcCCCCeEEEEeecCCCcc-ceeeeeeCCcEEEEEEcCCceEEEEEEEcCeeecCCCCCe
Q 028378           93 IPTMITWSHDGCEVAVEGSWDNWKT-RIALQRSGKDFTIMKVLPSGVYQYRFLVDGLWKYAPDLPS  157 (210)
Q Consensus        93 vpv~F~w~~~g~~V~V~GSFdnW~~-~ipM~rs~~~f~i~l~Lp~G~YqYKFiVDG~W~~Dp~~P~  157 (210)
                      .-|.|.+...++.|+|.|+||+|.. ..+|++.++.|.+++.||||+|+|||+|||+|+.||.+|.
T Consensus        17 ~~~~~~~~~~~~~~yl~G~Fn~w~~~~~~m~~~g~~~~~~v~L~~G~y~Y~f~vdg~~~~dp~n~~   82 (645)
T 4aef_A           17 AEVEFSLIREGSYAYLLGDFNAFNEGSFRMEQEGKNWKIKIALPEGVWHYAFSIDGKFVLDPDNPE   82 (645)
T ss_dssp             EEEEEEEECCSSCEEEEETTTTTCTTSSEEEECSSEEEEEEEECSEEEEEEEEETTEEECCTTCCC
T ss_pred             EEEEEecCCCCeEEEEEEcCCCCCCCcccceEcCCEEEEEEEeCCceEEEEEEECCeEecCCCCCC
Confidence            4677888888999999999999986 4789998889999999999999999999999999999984

>2z0b_A GDE5, KIAA1434, putative glycerophosphodiester phosphodiesterase; CBM20 domain, starch-binding, hydrolase, STR genomics, NPPSFA; 2.00A {Homo sapiens}

Probab=98.48  E-value=4.9e-07  Score=71.32  Aligned_cols=55  Identities=25%  Similarity=0.328  Sum_probs=46.5

Q ss_pred             CceeEEEEEcC---CCCeEEEEee---cCCCcc--ceeeeee----C-CcEEEEEEcCCc-eEEEEEEE
Q 028378           91 VGIPTMITWSH---DGCEVAVEGS---WDNWKT--RIALQRS----G-KDFTIMKVLPSG-VYQYRFLV  145 (210)
Q Consensus        91 ~~vpv~F~w~~---~g~~V~V~GS---FdnW~~--~ipM~rs----~-~~f~i~l~Lp~G-~YqYKFiV  145 (210)
                      ..+.|+|+...   .++.|+|+||   +.+|++  .++|.+.    . ..|++++.||.| .++|||++
T Consensus         7 ~~v~V~F~v~~~~~~ge~v~vvGs~~~LG~W~p~~av~L~~~~~~~~~~~W~~~v~lp~~~~~eYKyvi   75 (131)
T 2z0b_A            7 GPSQVAFEIRGTLLPGEVFAICGSCDALGNWNPQNAVALLPENDTGESMLWKATIVLSRGVSVQYRYFK   75 (131)
T ss_dssp             CCEEEEEEEECCCCTTCEEEEEESSGGGTTTCGGGCEECEECCTTCCSSEEEEEEEECTTCCEEEEEEE
T ss_pred             CeEEEEEEEeeecCCCCEEEEEeCCCcCCCCCccccccccccccCCCCCeEEEEEEcCCCCcEEEEEEE
Confidence            45788888773   5789999999   899997  4689886    3 479999999988 69999999

>3c8d_A Enterochelin esterase; alpha-beta-alpha sandwich, IROD, iron aquisition, structural genomics, PSI-2, protein structure initiative; HET: CIT; 1.80A {Shigella flexneri 2a str} SCOP: b.1.18.20 c.69.1.2 PDB: 2b20_A 3c87_A* 3c8h_A 3mga_A*

Probab=98.12  E-value=9e-06  Score=73.25  Aligned_cols=85  Identities=20%  Similarity=0.189  Sum_probs=64.7

Q ss_pred             ceeEEEEEcC-CC-------CeEEEE--eecC---CCccceeeeee-C-CcEEEEEEcCCceE-EEEEEEc---------
Q 028378           92 GIPTMITWSH-DG-------CEVAVE--GSWD---NWKTRIALQRS-G-KDFTIMKVLPSGVY-QYRFLVD---------  146 (210)
Q Consensus        92 ~vpv~F~w~~-~g-------~~V~V~--GSFd---nW~~~ipM~rs-~-~~f~i~l~Lp~G~Y-qYKFiVD---------  146 (210)
                      ...|||.|.. .+       ++|+|.  |..+   +|. ..+|+|. + +.|+.++.|+++-| .|+|+||         
T Consensus        30 ~~~vtF~~~~p~a~~~~~~~~~V~~~~~~~~d~~~~~~-~~~m~r~~~~~~W~~t~~l~~~~~~~Y~~~~~~~~~~~~~~  108 (403)
T 3c8d_A           30 MFEVTFWWRDPQGSEEYSTIKRVWVYITGVTDHHQNSQ-PQSMQRIAGTDVWQWTTQLNANWRGSYCFIPTERDDIFSAP  108 (403)
T ss_dssp             EEEEEEEEECTTCSTTTCCCCEEEEEETTTC--------CCBCEECTTSSEEEEEEEEETTCEEEEEEEEESCCSTTCCC
T ss_pred             cEEEEEEeeCCCcccccCccceEEEECcCCCccccccC-ccccccCCCCCeEEEEEEECCCcEEEEEEEecCcccccccc
Confidence            4689999995 55       799998  4333   222 2579994 3 57999999999999 9999999         


Q ss_pred             ---------------CeeecCCCCCeeeC-CCCCeeEEEEcCCCccc
Q 028378          147 ---------------GLWKYAPDLPSTQD-DDGNVYNILDLQVNITF  177 (210)
Q Consensus       147 ---------------G~W~~Dp~~P~~~D-~~G~~NNvI~V~d~vpe  177 (210)
                                     |..+.||.++.... ..|...|+|++.+..+.
T Consensus       109 ~~~~~~~r~~w~~~~~~~~~DP~n~~~~~~~~~~~~s~~~~p~~~~~  155 (403)
T 3c8d_A          109 SPDRLELREGWRKLLPQAIADPLNPQSWKGGLGHAVSALEMPQAPLQ  155 (403)
T ss_dssp             --CHHHHHHHHHHHGGGCBCCTTCSSEECCSSSSCEEEEECTTCCCC
T ss_pred             cchHHHHHHHHHHhhcccccCCCCCCCCCCCCCcccccccCCCCCcC
Confidence                           77889999996643 44888999999876443

>1ac0_A Glucoamylase; hydrolase, starch binding domain; HET: GLC BGC GLO; NMR {Aspergillus niger} SCOP: b.3.1.1 PDB: 1acz_A* 1kul_A 1kum_A

Probab=98.08  E-value=2.3e-06  Score=64.67  Aligned_cols=56  Identities=23%  Similarity=0.484  Sum_probs=45.3

Q ss_pred             CceeEEEEEcC---CCCeEEEEeec---CCCcc--ceeeeee-----CCcEEEEEEcCCc-eEEEEEEEc
Q 028378           91 VGIPTMITWSH---DGCEVAVEGSW---DNWKT--RIALQRS-----GKDFTIMKVLPSG-VYQYRFLVD  146 (210)
Q Consensus        91 ~~vpv~F~w~~---~g~~V~V~GSF---dnW~~--~ipM~rs-----~~~f~i~l~Lp~G-~YqYKFiVD  146 (210)
                      ..+.|+|+...   .|++|+|+||.   .+|+.  .++|.+.     +..|++++.||.| .++|||+|.
T Consensus         5 ~~v~V~F~v~~~t~~Ge~v~vvGs~~~LG~W~~~~a~~l~~~~~~~~~~~W~~~v~lp~~~~~eYKy~v~   74 (108)
T 1ac0_A            5 TAVAVTFDLTATTTYGENIYLVGSISQLGDWETSDGIALSADKYTSSDPLWYVTVTLPAGESFEYKFIRI   74 (108)
T ss_dssp             CCCCEEEEEECCCCSSCCEECCCSSSTTCSSSGGGSCCBBCSSSSSSCSSCEEEECCCSSSCEECCCEEC
T ss_pred             CeEEEEEEEeeECCCCCEEEEEeCcHHHCCCCHHHCccccccccCCcCCeEEEEEEeCCCCeEEEEEEEE
Confidence            45788888764   57899999985   58996  4689875     2579999999998 599999993

>1m7x_A 1,4-alpha-glucan branching enzyme; alpha/beta barrel, beta sandwich, transferase; 2.30A {Escherichia coli} SCOP: b.1.18.2 b.71.1.1 c.1.8.1 PDB: 3o7y_A* 3o7z_A*

Probab=97.66  E-value=0.00012  Score=69.87  Aligned_cols=65  Identities=20%  Similarity=0.402  Sum_probs=51.0

Q ss_pred             eEEEE-EcCCCCeEEEEeecCCCcc-ceeeee--eCCcEEEEEE-cCCceEEEEEEE---cCee--ecCCCCCeee
Q 028378           94 PTMIT-WSHDGCEVAVEGSWDNWKT-RIALQR--SGKDFTIMKV-LPSGVYQYRFLV---DGLW--KYAPDLPSTQ  159 (210)
Q Consensus        94 pv~F~-w~~~g~~V~V~GSFdnW~~-~ipM~r--s~~~f~i~l~-Lp~G~YqYKFiV---DG~W--~~Dp~~P~~~  159 (210)
                      -|+|+ |.+.+++|.|.|+|++|+. +++|++  .++.|++.+. +.+|. .|||.|   ||.+  +.||-.....
T Consensus        26 gv~F~vwAP~A~~V~L~gdfn~~~~~~~~M~~~~~~GvW~~~v~~~~~g~-~Y~f~i~~~~g~~~~~~DPya~~~~  100 (617)
T 1m7x_A           26 GTRFSVWAPNARRVSVVGQFNYWDGRRHPMRLRKESGIWELFIPGAHNGQ-LYKYEMIDANGNLRLKSDPYAFEAQ  100 (617)
T ss_dssp             EEEEEEECSSCSCEEEEEGGGTSCTTTCBCCCCTTTTEEEEEEETCCTTC-EEEEEEECTTSCEEEECCTTCSSEE
T ss_pred             cEEEEEECCCCCEEEEEEEeCCCCCceeEeEECCCCCEEEEEEcCCCCCC-EEEEEEEcCCCcEEEecCccceeec
Confidence            47884 8899999999999999975 579986  3468999987 67887 499988   6774  5777665443

>3aml_A OS06G0726400 protein; starch-branching, transferase; HET: EPE; 1.70A {Oryza sativa japonica group} PDB: 3amk_A

Probab=97.52  E-value=0.00017  Score=71.07  Aligned_cols=62  Identities=18%  Similarity=0.476  Sum_probs=48.4

Q ss_pred             eEEE-EEcCCCCeEEEEeecCCCcc-ceeeeeeC-CcEEEEEE-------cCCceEEEEEEEc---Cee--ecCCCCC
Q 028378           94 PTMI-TWSHDGCEVAVEGSWDNWKT-RIALQRSG-KDFTIMKV-------LPSGVYQYRFLVD---GLW--KYAPDLP  156 (210)
Q Consensus        94 pv~F-~w~~~g~~V~V~GSFdnW~~-~ipM~rs~-~~f~i~l~-------Lp~G~YqYKFiVD---G~W--~~Dp~~P  156 (210)
                      -|+| .|.+.+++|.|+|+|++|+. +++|.|.. +.|.+.+.       +.+|.+ |||.|+   |.|  +.||-..
T Consensus        66 gv~F~vwAP~A~~V~l~gdfn~w~~~~~~m~~~~~GvW~~~v~~~~g~~~i~~g~~-Y~y~i~~~~g~~~~~~dpya~  142 (755)
T 3aml_A           66 ATIYREWAPAAQEAQLIGEFNNWNGAKHKMEKDKFGIWSIKISHVNGKPAIPHNSK-VKFRFRHGGGAWVDRIPAWIR  142 (755)
T ss_dssp             EEEEEEECTTCSEEEEEEGGGTTCCTTCBCEECTTSEEEEEEECBTTBCSSCTTEE-EEEEEECTTCCCEEECCTTCS
T ss_pred             eEEEEEECCCCCEEEEEEecCCCCCceeeceeCCCCEEEEEEcccccccCCCCCCE-EEEEEECCCCcEEecCCcchh
Confidence            3678 59999999999999999985 58999865 68999988       677764 888886   455  3477554

>3k1d_A 1,4-alpha-glucan-branching enzyme; mycobacterium tuberculosis H37RV, mesophilic human pathogen, RV1326C gene, glycosyl transferase; 2.33A {Mycobacterium tuberculosis}

Probab=97.51  E-value=0.00019  Score=70.46  Aligned_cols=64  Identities=19%  Similarity=0.398  Sum_probs=50.3

Q ss_pred             eEEE-EEcCCCCeEEEEeecCCCcc-ceeeeee--CCcEEEEEE-cCCceEEEEEEE---cCee--ecCCCCCee
Q 028378           94 PTMI-TWSHDGCEVAVEGSWDNWKT-RIALQRS--GKDFTIMKV-LPSGVYQYRFLV---DGLW--KYAPDLPST  158 (210)
Q Consensus        94 pv~F-~w~~~g~~V~V~GSFdnW~~-~ipM~rs--~~~f~i~l~-Lp~G~YqYKFiV---DG~W--~~Dp~~P~~  158 (210)
                      -|+| +|.+.+++|.|+|+||+|+. ..+|++.  .+.|.+.+. +.+|. .|||.|   ||++  +.||-...+
T Consensus       137 g~~F~vwAP~A~~V~l~gdfn~w~~~~~~m~~~~~~GvW~~~i~~~~~g~-~Y~y~i~~~~g~~~~~~DPya~~~  210 (722)
T 3k1d_A          137 GVSFAVWAPNAKGVSLIGEFNGWNGHEAPMRVLGPSGVWELFWPDFPCDG-LYKFRVHGADGVVTDRADPFAFGT  210 (722)
T ss_dssp             EEEEEEECTTCSEEEEEEGGGTTCCCSCBCEECGGGCEEEEEEETCCTTC-EEEEEEECTTSCEEEECCTTCSSB
T ss_pred             eEEEEEECCCCCEEEEEeecCCCCCCcccCEEcCCCCEEEEEeCCCCCCC-EEEEEEEcCCCcEEEeecccceee
Confidence            3678 59999999999999999986 4799874  368999886 77884 577777   5664  678877644

>2laa_A Beta/alpha-amylase; SBD, CBM25, hydrolase; NMR {Paenibacillus polymyxa} PDB: 2lab_A

Probab=97.02  E-value=0.0037  Score=47.83  Aligned_cols=63  Identities=14%  Similarity=0.190  Sum_probs=50.3

Q ss_pred             eeEEEEEcCCCCeEEEEeecC--CCcc--ceeeeeeC-CcE-EEEEEcCCc-eEEEEEEEcCe--eecCCCCC
Q 028378           93 IPTMITWSHDGCEVAVEGSWD--NWKT--RIALQRSG-KDF-TIMKVLPSG-VYQYRFLVDGL--WKYAPDLP  156 (210)
Q Consensus        93 vpv~F~w~~~g~~V~V~GSFd--nW~~--~ipM~rs~-~~f-~i~l~Lp~G-~YqYKFiVDG~--W~~Dp~~P  156 (210)
                      -.|+|.|+.+.++|+|-..+.  +|+.  .++|.+.. ..| +++|.|+.+ .++|+|. ||.  |-.+...-
T Consensus         5 ~~vtiyY~~g~~~vylHyg~~~g~Wt~~~~v~M~~~~~~gw~~~TI~l~~g~~~~~~F~-dG~~~WDNn~g~N   76 (104)
T 2laa_A            5 NKVTIYYKKGFNSPYIHYRPAGGSWTAAPGVKMQDAEISGYAKITVDIGSASQLEAAFN-DGNNNWDSNNTKN   76 (104)
T ss_dssp             CEEEEEEECSSSSCEEEEEETTSCCCSSSCEECEEETTTTEEEEEEECTTCSCEEEEEE-CSSSCEESTTTSC
T ss_pred             CEEEEEEcCCCCcEEEEEcCCCCCCCcCCccccccccCCCeEEEEEECCCCCEEEEEEe-CCCCcCcCCCCcc
Confidence            467888888899999999985  8996  46899886 578 599999976 8999996 765  87765543

>2bhu_A Maltooligosyltrehalose trehalohydrolase; alpha-amylase, protein-carbohydrate complex, desiccation resistance; HET: TRS PGE; 1.1A {Deinococcus radiodurans} SCOP: b.1.18.2 b.71.1.1 c.1.8.1 PDB: 2bhy_A* 2bhz_A* 2bxy_A* 2bxz_A* 2by0_A* 2by1_A* 2by2_A* 2by3_A*

Probab=96.63  E-value=0.0053  Score=58.49  Aligned_cols=60  Identities=22%  Similarity=0.256  Sum_probs=48.3

Q ss_pred             eEEE-EEcCCCCeEEEEeecCCCccceeeeee-CCcEEEEEEcCCceEEEEEEEcCeeecCCCCCee
Q 028378           94 PTMI-TWSHDGCEVAVEGSWDNWKTRIALQRS-GKDFTIMKVLPSGVYQYRFLVDGLWKYAPDLPST  158 (210)
Q Consensus        94 pv~F-~w~~~g~~V~V~GSFdnW~~~ipM~rs-~~~f~i~l~Lp~G~YqYKFiVDG~W~~Dp~~P~~  158 (210)
                      -|+| .|.+.+++|.|.++   . ..++|++. ++.|++.+.+.+|.+ |+|.|||..+.||.....
T Consensus        35 ~~~f~vwap~a~~v~l~~~---~-~~~~m~~~~~g~w~~~~~~~~g~~-Y~~~v~g~~~~DPya~~~   96 (602)
T 2bhu_A           35 GTRFRLWTSTARTVAVRVN---G-TEHVMTSLGGGIYELELPVGPGAR-YLFVLDGVPTPDPYARFL   96 (602)
T ss_dssp             CEEEEEECSSCSSEEEEET---T-EEEECEEEETTEEEEEESCCTTCE-EEEEETTEEECCTTCSCC
T ss_pred             eEEEEEECCCCCEEEEEEc---C-CEEeCeeCCCcEEEEEEECCCCcE-EEEEECCeEecCCCcccc
Confidence            4678 48999999999994   2 46899985 568999988888886 999999977788876644

>3vgf_A Malto-oligosyltrehalose trehalohydrolase; alpha/beta barrel, alpha-amylas hydrolase; HET: GLC FLC; 2.30A {Sulfolobus solfataricus} PDB: 3vge_A* 3vgd_A* 3vgb_A* 1eh9_A* 3vgh_A* 3vgg_A* 1eha_A

Probab=96.61  E-value=0.0026  Score=59.93  Aligned_cols=60  Identities=15%  Similarity=0.164  Sum_probs=49.3

Q ss_pred             eEEE-EEcCCCCeEEEEeecCCCccceeeeeeC-CcEEEEEE-cCCceEEEEEEEcCe-eecCCCCCe
Q 028378           94 PTMI-TWSHDGCEVAVEGSWDNWKTRIALQRSG-KDFTIMKV-LPSGVYQYRFLVDGL-WKYAPDLPS  157 (210)
Q Consensus        94 pv~F-~w~~~g~~V~V~GSFdnW~~~ipM~rs~-~~f~i~l~-Lp~G~YqYKFiVDG~-W~~Dp~~P~  157 (210)
                      -|+| .|.+.+++|.|.+.++   ..++|++.+ +.|++.+. +.+|. .|||.|||. .+.||....
T Consensus        10 ~~~f~vwap~a~~v~l~~~~~---~~~~m~~~~~g~w~~~~~~~~~g~-~Y~~~~~~~~~~~DP~~~~   73 (558)
T 3vgf_A           10 EVIFTLWAPYQKSVKLKVLEK---GLYEMERDEKGYFTITLNNVKVRD-RYKYVLDDASEIPDPASRY   73 (558)
T ss_dssp             EEEEEEECTTCSCCEEEETTT---EEEECEECTTCEEEEEESSCCTTC-EEEEECTTSCEECCTTCSC
T ss_pred             cEEEEEECCCCCEEEEEEecC---ceeecccCCCCEEEEEECCCCCCC-EEEEEEeCCccccCcchhh
Confidence            3678 5899999999999987   568999865 58999886 77885 699999987 788886653

>1bf2_A Isoamylase; hydrolase, glycosidase, debranching enzyme; 2.00A {Pseudomonas amyloderamosa} SCOP: b.1.18.2 b.71.1.1 c.1.8.1

Probab=96.54  E-value=0.0034  Score=61.40  Aligned_cols=54  Identities=9%  Similarity=0.105  Sum_probs=43.9

Q ss_pred             EEE-EEcCCCCeEEEEeecCCCc-----cceeeeee-CCcEEEEEE-cC------CceEEEEEEEcCee
Q 028378           95 TMI-TWSHDGCEVAVEGSWDNWK-----TRIALQRS-GKDFTIMKV-LP------SGVYQYRFLVDGLW  149 (210)
Q Consensus        95 v~F-~w~~~g~~V~V~GSFdnW~-----~~ipM~rs-~~~f~i~l~-Lp------~G~YqYKFiVDG~W  149 (210)
                      |+| .|.+.+++|.|.+ |++|.     .+++|.+. ++.|.+.+. +.      +|.|.|+|.|+|.|
T Consensus        18 ~~F~vwap~A~~V~l~l-~~~~~~~~~~~~~~m~~~~~gvW~~~v~~~~~~~~~~~g~y~Y~y~v~g~~   85 (750)
T 1bf2_A           18 ITFRVYSSQATRIVLYL-YSAGYGVQESATYTLSPAGSGVWAVTVPVSSIKAAGITGAVYYGYRAWGPN   85 (750)
T ss_dssp             EEEEEECSSCSEEEEEE-ESSSSSCCCSEEEECEECSTTEEEEEEEHHHHHHTTCCSCCEEEEEEEBTT
T ss_pred             EEEEEECCCCCEEEEEE-EccCCCCccceEEecccCCCCEEEEEECCcccccccCCCCEEEEEEEEeee
Confidence            678 4899999999998 88764     35789875 468999876 66      89999999999753

>2vn4_A Glucoamylase; hydrolase, carbohydrate binding, glycoside hydrolase family 15, amyloglucosidase; HET: MAN NAG BTB; 1.85A {Hypocrea jecorina} PDB: 2vn7_A*

Probab=96.48  E-value=0.0083  Score=57.63  Aligned_cols=55  Identities=24%  Similarity=0.335  Sum_probs=45.5

Q ss_pred             CceeEEEEEcC---CCCeEEEEeecC---CCcc--ceeeeeeC-----CcEEEEEEcCCc-eEEEEEEE
Q 028378           91 VGIPTMITWSH---DGCEVAVEGSWD---NWKT--RIALQRSG-----KDFTIMKVLPSG-VYQYRFLV  145 (210)
Q Consensus        91 ~~vpv~F~w~~---~g~~V~V~GSFd---nW~~--~ipM~rs~-----~~f~i~l~Lp~G-~YqYKFiV  145 (210)
                      ..+.|+|+...   .|++|+|+|+-.   +|+.  .++|...+     ..|++++.||.| .++|||+|
T Consensus       495 ~~v~v~F~v~~~t~~Ge~l~vvGs~~~LG~W~~~~a~~L~~~~~t~~~~~W~~~v~lp~~~~~eYKyvv  563 (599)
T 2vn4_A          495 TSVAVTFHELVSTQFGQTVKVAGNAAALGNWSTSAAVALDAVNYADNHPLWIGTVNLEAGDVVEYKYIN  563 (599)
T ss_dssp             SEEEEEEEEECCCCTTCEEEEEESSGGGTTTCTTTSEECBCTTCBTTBCEEEEEEEEETTCEEEEEEEE
T ss_pred             CeEEEEEEEeEEcCCCCEEEEEecccCCCCcChhheeecccccCCCCCCcEEEEEEcCCCCcEEEEEEE
Confidence            45788888763   689999999874   7996  47898765     589999999988 59999998

>1wzl_A Alpha-amylase II; pullulan, GH-13, alpha-amylase family, hydrolase; 2.00A {Thermoactinomyces vulgaris} SCOP: b.1.18.2 b.71.1.1 c.1.8.1 PDB: 1ji2_A 1bvz_A 1vfk_A* 3a6o_A* 1wzm_A 1jf6_A 1wzk_A 2d2o_A* 1jib_A* 1jl8_A* 1vb9_A* 1g1y_A* 1vfo_A* 1vfm_A* 1vfu_A* 1jf5_A

Probab=96.46  E-value=0.0068  Score=57.11  Aligned_cols=56  Identities=13%  Similarity=0.115  Sum_probs=44.6

Q ss_pred             CceeEEE-EEcCCCCeEEE-EeecCCCcc----ceeeeeeC--C---cEEEEEEcCCceEEEEEEEc
Q 028378           91 VGIPTMI-TWSHDGCEVAV-EGSWDNWKT----RIALQRSG--K---DFTIMKVLPSGVYQYRFLVD  146 (210)
Q Consensus        91 ~~vpv~F-~w~~~g~~V~V-~GSFdnW~~----~ipM~rs~--~---~f~i~l~Lp~G~YqYKFiVD  146 (210)
                      ..+.++| +|.+.+++|.| .|+|++|+.    .++|+|.+  +   .|++.+......+.|||.|.
T Consensus        21 ~~~~i~~~~~~~~a~~V~l~~~d~~~~~~~~~~~~~m~~~~~~~~~~~w~~~i~~~~~~~~Y~f~i~   87 (585)
T 1wzl_A           21 TQLRVRLRAKKGDVVRCEVLYADRYASPEEELAHALAGKAGSDERFDYFEALLECSTKRVKYVFLLT   87 (585)
T ss_dssp             TEEEEEEEEETTTCSEEEEEEECTTCCTTSCCEEEECEEEEECSSEEEEEEEEECTTSCEEEEEEEE
T ss_pred             CEEEEEEEECCCCccEEEEEECCCcCCCCCceEEEEEEEeecCCCEEEEEEEEECCCCeEEEEEEEE
Confidence            4566667 47789999999 899999964    57998742  3   49999988777789999985

>2wsk_A Glycogen debranching enzyme; carbohydrate metabolism, hydrolase, glycosidase, ISO-amylase glycosyl hydrolase, glycogen metabolism; 2.25A {Escherichia coli k-12}

Probab=96.42  E-value=0.0085  Score=57.60  Aligned_cols=51  Identities=22%  Similarity=0.227  Sum_probs=41.7

Q ss_pred             EEE-EEcCCCCeEEEEeecCCCc--cceeeee-eCCcEEEEEE-cCCceEEEEEEEcC
Q 028378           95 TMI-TWSHDGCEVAVEGSWDNWK--TRIALQR-SGKDFTIMKV-LPSGVYQYRFLVDG  147 (210)
Q Consensus        95 v~F-~w~~~g~~V~V~GSFdnW~--~~ipM~r-s~~~f~i~l~-Lp~G~YqYKFiVDG  147 (210)
                      |+| .|.+.+++|.|.+ |+++.  .+++|.+ .++.|.+.+. +.+|.+ |+|.|+|
T Consensus        21 ~~F~vwap~A~~V~l~~-f~~~~~~~~~~m~~~~~g~w~~~v~~~~~g~~-Y~y~v~~   76 (657)
T 2wsk_A           21 VNFTLFSAHAERVELCV-FDANGQEHRYDLPGHSGDIWHGYLPDARPGLR-YGYRVHG   76 (657)
T ss_dssp             EEEEEECSSCSEEEEEE-ECTTCCEEEEECCEEETTEEEEEEETCCTTCE-EEEEEEC
T ss_pred             EEEEEECCCCCEEEEEE-ECCCCCEEEEeCcCCCCCEEEEEECCCCCCCE-EEEEEee
Confidence            778 4899999999999 88765  3689975 4678999875 678876 9999988

>2vr5_A Glycogen operon protein GLGX; hydrolase, glycosidase, glycosyl hydrolase, glycogen debraching; HET: GLC A16; 2.8A {Sulfolobus solfataricus} PDB: 2vnc_A* 2vuy_A

Probab=96.28  E-value=0.012  Score=57.38  Aligned_cols=53  Identities=17%  Similarity=0.231  Sum_probs=42.1

Q ss_pred             eEEE-EEcCCCCeEEEEeecCCCc-----cceeeeee-CCcEEEEEE-cCCceEEEEEEEcCe
Q 028378           94 PTMI-TWSHDGCEVAVEGSWDNWK-----TRIALQRS-GKDFTIMKV-LPSGVYQYRFLVDGL  148 (210)
Q Consensus        94 pv~F-~w~~~g~~V~V~GSFdnW~-----~~ipM~rs-~~~f~i~l~-Lp~G~YqYKFiVDG~  148 (210)
                      -|+| .|.+.+++|.|.+ |+.+.     .+++|.+. ++.|.+.+. +.+|.+ |+|.|+|.
T Consensus        30 g~~F~vwap~A~~V~l~l-f~~~~~~~~~~~~~m~~~~~gvw~~~v~~~~~g~~-Y~y~v~g~   90 (718)
T 2vr5_A           30 GVNFSLFSENAEKVELLL-YSLTNQKYPKEIIEVKNKTGDIWHVFVPGLRPGQL-YAYRVYGP   90 (718)
T ss_dssp             EEEEEEECSSCSEEEEEE-CCSSCCSSCSEEEEECEESSSEEEEEEETCCTTCE-EEEEEECC
T ss_pred             eEEEEEECCCCCEEEEEE-EcCCCCCCcceEEeCccCCCCEEEEEeCCCCCCCE-EEEEEeee
Confidence            3678 4899999999999 86543     25889875 468999875 778887 99999984

>3bmv_A Cyclomaltodextrin glucanotransferase; glycosidase, thermostable, family 13 glycosyl hydrolas; 1.60A {Thermoanaerobacterium thermosulfurigenorganism_taxid} SCOP: b.1.18.2 b.3.1.1 b.71.1.1 c.1.8.1 PDB: 3bmw_A* 1ciu_A 1a47_A 1pj9_A* 1cgt_A

Probab=96.06  E-value=0.011  Score=56.78  Aligned_cols=55  Identities=22%  Similarity=0.333  Sum_probs=45.4

Q ss_pred             CceeEEEEEcC----CCCeEEEEeecC---CCcc--ce-eeee---e-CCcEEEEEEcCCc-eEEEEEEE
Q 028378           91 VGIPTMITWSH----DGCEVAVEGSWD---NWKT--RI-ALQR---S-GKDFTIMKVLPSG-VYQYRFLV  145 (210)
Q Consensus        91 ~~vpv~F~w~~----~g~~V~V~GSFd---nW~~--~i-pM~r---s-~~~f~i~l~Lp~G-~YqYKFiV  145 (210)
                      ..++|+|+...    .|+.|+|+||-.   +|++  .+ +|..   . ...|++++.||.| .++|||++
T Consensus       582 ~~v~v~f~v~~~~~~~g~~v~v~G~~~~LG~W~~~~a~~~l~~~~~~~~~~W~~~v~lp~~~~~eyK~~~  651 (683)
T 3bmv_A          582 NQICVRFVVNNASTVYGENVYLTGNVAELGNWDTSKAIGPMFNQVVYQYPTWYYDVSVPAGTTIQFKFIK  651 (683)
T ss_dssp             SEEEEEEEEESCCCCTTCEEEEEESSGGGTTTCGGGCBCSCBCSSSSCTTSEEEEEEEETTCEEEEEEEE
T ss_pred             CeEEEEEEEEeccCCCCCEEEEEeCcHHhCCCChhhhhhhhcccCCCCCCcEEEEEEeCCCCcEEEEEEE
Confidence            46889998763    589999999886   8996  46 7877   3 3589999999988 79999998

>1cyg_A Cyclodextrin glucanotransferase; glycosyltransferase; 2.50A {Geobacillus stearothermophilus} SCOP: b.1.18.2 b.3.1.1 b.71.1.1 c.1.8.1

Probab=96.04  E-value=0.024  Score=54.41  Aligned_cols=55  Identities=18%  Similarity=0.367  Sum_probs=45.0

Q ss_pred             CceeEEEEEcC----CCCeEEEEeecC---CCccc--e-eeee---eC-CcEEEEEEcCCc-eEEEEEEE
Q 028378           91 VGIPTMITWSH----DGCEVAVEGSWD---NWKTR--I-ALQR---SG-KDFTIMKVLPSG-VYQYRFLV  145 (210)
Q Consensus        91 ~~vpv~F~w~~----~g~~V~V~GSFd---nW~~~--i-pM~r---s~-~~f~i~l~Lp~G-~YqYKFiV  145 (210)
                      ..++|+|+...    .|+.|+|+||-.   +|++.  + +|..   .. ..|++++.||.| .++|||++
T Consensus       578 ~~v~v~f~v~~~~~~~ge~v~v~G~~~~LG~W~~~~a~~~l~~~~~~~~~~W~~~v~lp~~~~~eyK~v~  647 (680)
T 1cyg_A          578 DQVSVRFVVNNATTNLGQNIYIVGNVYELGNWDTSKAIGPMFNQVVYSYPTWYIDVSVPEGKTIEFKFIK  647 (680)
T ss_dssp             CEEEEEEEEESCCCCSSCEEEEEESSGGGBTTCGGGCBCCCBCSSSSCTTCEEEEEEEESSCEEEEEEEE
T ss_pred             CeEEEEEEEeeccCCCCCEEEEEeCcHHhCCCChhhhhhhhccccCCCCCcEEEEEEeCCCCcEEEEEEE
Confidence            56889998753    588999999875   89973  5 6876   33 479999999988 79999998

>1j0h_A Neopullulanase; beta-alpha-barrels, hydrolase; 1.90A {Geobacillus stearothermophilus} SCOP: b.1.18.2 b.71.1.1 c.1.8.1 PDB: 1j0i_A* 1j0j_A* 1j0k_A* 1sma_A 1gvi_A*

Probab=96.02  E-value=0.0098  Score=56.07  Aligned_cols=57  Identities=14%  Similarity=0.251  Sum_probs=44.9

Q ss_pred             CCceeEEEE-EcCCCCeEEE-EeecCCCcc------ceeeeeeC--C---cEEEEEEcCCceEEEEEEEc
Q 028378           90 GVGIPTMIT-WSHDGCEVAV-EGSWDNWKT------RIALQRSG--K---DFTIMKVLPSGVYQYRFLVD  146 (210)
Q Consensus        90 ~~~vpv~F~-w~~~g~~V~V-~GSFdnW~~------~ipM~rs~--~---~f~i~l~Lp~G~YqYKFiVD  146 (210)
                      ...+.++|+ |...+++|.| .|+|++|+.      .++|+|.+  +   .|++.+......+.|||.|+
T Consensus        20 ~~~~~i~~~~~~~~a~~V~l~~~d~~~~~~~~~~~~~~~m~~~~~~~~~~~w~~~v~~~~~~~~Y~f~i~   89 (588)
T 1j0h_A           20 SETLHLRLRTKKDDIDRVELLHGDPYDWQNGAWQFQMMPMRKTGSDELFDYWFAEVKPPYRRLRYGFVLY   89 (588)
T ss_dssp             SSCEEEEEEEETTTCSEEEEEEECTTCEETTEECCEEEECEEEEECSSEEEEEEEECCTTSCEEEEEEEE
T ss_pred             CCEEEEEEEECCCCccEEEEEECCCCCccccccceEEEEeEEeecCCCeEEEEEEEECCCcEEEEEEEEE
Confidence            456777774 7789999999 799999864      57998743  2   59999887777788999885

>1d3c_A Cyclodextrin glycosyltransferase; alpha-amylase, product complex, oligosaccharide, family 13 glycosyl hydrolase, transglycosylation; HET: GLC; 1.78A {Bacillus circulans} SCOP: b.1.18.2 b.3.1.1 b.71.1.1 c.1.8.1 PDB: 1cxf_A* 1cxk_A* 1cdg_A* 1cxe_A* 1cxh_A* 1cxi_A* 2cxg_A* 1cgv_A* 2dij_A* 1cgy_A* 1kck_A* 1cgx_A* 1cxl_A* 1cgw_A* 1tcm_A 1kcl_A* 1eo5_A* 1eo7_A* 1dtu_A* 1ot1_A* ...

Probab=95.81  E-value=0.017  Score=55.51  Aligned_cols=55  Identities=20%  Similarity=0.377  Sum_probs=44.9

Q ss_pred             CceeEEEEEcC----CCCeEEEEeecC---CCccc--e-eeee---eC-CcEEEEEEcCCc-eEEEEEEE
Q 028378           91 VGIPTMITWSH----DGCEVAVEGSWD---NWKTR--I-ALQR---SG-KDFTIMKVLPSG-VYQYRFLV  145 (210)
Q Consensus        91 ~~vpv~F~w~~----~g~~V~V~GSFd---nW~~~--i-pM~r---s~-~~f~i~l~Lp~G-~YqYKFiV  145 (210)
                      ..++|+|+...    .|+.|+|+||-.   +|++.  + +|..   .. ..|++++.||.| .++|||++
T Consensus       585 ~~v~v~f~v~~~~~~~g~~~~v~G~~~~LG~W~~~~a~~~l~~~~~~~~~~W~~~v~lp~~~~~eyK~~~  654 (686)
T 1d3c_A          585 DQVSVRFVVNNATTALGQNVYLTGSVSELGNWDPAKAIGPMYNQVVYQYPNWYYDVSVPAGKTIEFKFLK  654 (686)
T ss_dssp             SEEEEEEEEECCCCCTTCEEEEEESSGGGTTTCGGGCBCCCBCSSSSCTTCEEEEEEEETTCEEEEEEEE
T ss_pred             CeEEEEEEEeeccCCCCCEEEEEeCcHHhCCCChhhhhhhhccccCCCCCeEEEEEEeCCCCcEEEEEEE
Confidence            56889998753    588999999876   89973  5 6776   33 489999999988 79999998

>1qho_A Alpha-amylase; glycoside hydrolase, starch degradation; HET: MAL ABD; 1.70A {Geobacillus stearothermophilus} SCOP: b.1.18.2 b.3.1.1 b.71.1.1 c.1.8.1 PDB: 1qhp_A*

Probab=95.80  E-value=0.02  Score=55.05  Aligned_cols=56  Identities=23%  Similarity=0.466  Sum_probs=45.1

Q ss_pred             CCceeEEEEEcC-----CCCeEEEEeecC---CCcc--------ce-eeeeeC-CcEEEEEEcCCc-eEEEEEEE
Q 028378           90 GVGIPTMITWSH-----DGCEVAVEGSWD---NWKT--------RI-ALQRSG-KDFTIMKVLPSG-VYQYRFLV  145 (210)
Q Consensus        90 ~~~vpv~F~w~~-----~g~~V~V~GSFd---nW~~--------~i-pM~rs~-~~f~i~l~Lp~G-~YqYKFiV  145 (210)
                      ...+.|+|+...     .|++|+|+|+-.   +|++        .+ +|.... ..|++++.||.| .++|||+|
T Consensus       579 ~~~v~v~F~v~~~~t~~~G~~l~v~G~~~~LG~W~~~~~~~~~~a~~~l~~~~~~~W~~~v~l~~~~~~eyKy~~  653 (686)
T 1qho_A          579 GTQTSVVFTVKSAPPTNLGDKIYLTGNIPELGNWSTDTSGAVNNAQGPLLAPNYPDWFYVFSVPAGKTIQFKFFI  653 (686)
T ss_dssp             SSEEEEEEEEESCCCCCTTCEEEEEESSGGGTTTCCCCSSCSSCCBCCCBCTTTTSEEEEEEEETTCEEEEEEEE
T ss_pred             CCeEEEEEEEecccCCCCCCEEEEEeChHHhCCCCCccccchhhhhcccccCCCCcEEEEEEeCCCCeEEEEEEE
Confidence            356788898763     478999999884   7987        45 777654 489999999988 59999998

>2e8y_A AMYX protein, pullulanase; multiple domain, beta-alpha-barrel, alpha-amylase-family, HY; 2.11A {Bacillus subtilis} PDB: 2e8z_A* 2e9b_A*

Probab=95.60  E-value=0.028  Score=54.50  Aligned_cols=63  Identities=17%  Similarity=0.200  Sum_probs=46.7

Q ss_pred             eEEEE-EcCCCCeEEEEeecCCCcc-ceeeeeeC-CcEEEEEE-cCCceEEEEEEEc--Ce--eecCCCCCe
Q 028378           94 PTMIT-WSHDGCEVAVEGSWDNWKT-RIALQRSG-KDFTIMKV-LPSGVYQYRFLVD--GL--WKYAPDLPS  157 (210)
Q Consensus        94 pv~F~-w~~~g~~V~V~GSFdnW~~-~ipM~rs~-~~f~i~l~-Lp~G~YqYKFiVD--G~--W~~Dp~~P~  157 (210)
                      -|+|+ |.+.+++|.|.+.+++|.. .++|++.. +.|.+.+. +.+| ..|+|.|+  |.  .+.||....
T Consensus       114 ~~~f~vwap~a~~V~l~~~~~~~~~~~~~m~~~~~g~w~~~v~~~~~g-~~Y~f~v~~~g~~~~~~DPya~~  184 (718)
T 2e8y_A          114 HTVFKVWAPAATSAAVKLSHPNKSGRTFQMTRLEKGVYAVTVTGDLHG-YEYLFCICNNSEWMETVDQYAKA  184 (718)
T ss_dssp             EEEEEEECTTCSEEEEEEECTTSCCEEEECEECGGGEEEEEEESCCTT-CEEEEEEEETTEEEEECCTTCSS
T ss_pred             cEEEEEECCCCCEEEEEEEcCCCcceEEeCccCCCCEEEEEECCCCCC-CeEEEEEEeCCeEEEecCCcccc
Confidence            47784 8899999999999988864 57999864 57999887 4566 35666664  76  456876653

>4aio_A Limit dextrinase; hydrolase, pullulanase, glycoside hydrolase family 13; 1.90A {Hordeum vulgare} PDB: 2x4c_A* 2y4s_A* 2y5e_A* 2x4b_A

Probab=95.24  E-value=0.037  Score=53.45  Aligned_cols=61  Identities=15%  Similarity=0.046  Sum_probs=43.4

Q ss_pred             EEEE-EcCCCCeEEEEeecCCCccc---eeeeeeCCcEEEEEE-cCCceEEEEEEEcC----------eeecCCCCC
Q 028378           95 TMIT-WSHDGCEVAVEGSWDNWKTR---IALQRSGKDFTIMKV-LPSGVYQYRFLVDG----------LWKYAPDLP  156 (210)
Q Consensus        95 v~F~-w~~~g~~V~V~GSFdnW~~~---ipM~rs~~~f~i~l~-Lp~G~YqYKFiVDG----------~W~~Dp~~P  156 (210)
                      |+|+ |.+.+++|.|.+-+++|...   +.|.+.++.|++.+. +.+|. .|+|.|++          ....||...
T Consensus       138 ~~F~vwAp~A~~V~l~l~~~~~~~~~~~~~~~~~~g~W~~~~~~~~~g~-~Y~y~v~~~~~~~~~~~~~~~~DPya~  213 (884)
T 4aio_A          138 VSLHLWAPTAQGVSVCFFDGPAGPALETVQLKESNGVWSVTGPREWENR-YYLYEVDVYHPTKAQVLKCLAGDPYAR  213 (884)
T ss_dssp             EEEEEECTTCSEEEEEEESTTTSCEEEEEECEEETTEEEEEEEGGGTTC-EEEEEEEEEETTTTEEEEEEECCTTCS
T ss_pred             EEEEEECCCCCEEEEEEEeCCCCCeeeeeeecCCCCEEEEEECCCCCCC-EEEEEEeCCCCCcccccCccccCCCee
Confidence            7885 99999999999965556543   244556789999886 56675 48888864          234677654

>1ea9_C Cyclomaltodextrinase; hydrolase, glycosidase; 3.2A {Bacillus SP} SCOP: b.1.18.2 b.71.1.1 c.1.8.1

Probab=95.16  E-value=0.019  Score=54.11  Aligned_cols=56  Identities=18%  Similarity=0.242  Sum_probs=42.9

Q ss_pred             CceeEEE-EEcCCCCeEEE-EeecCCCcc---ceeeeeeC--C---cEEEEEEcCCceEEEEEEEc
Q 028378           91 VGIPTMI-TWSHDGCEVAV-EGSWDNWKT---RIALQRSG--K---DFTIMKVLPSGVYQYRFLVD  146 (210)
Q Consensus        91 ~~vpv~F-~w~~~g~~V~V-~GSFdnW~~---~ipM~rs~--~---~f~i~l~Lp~G~YqYKFiVD  146 (210)
                      ..+.++| +|.+.+++|.| .|+|++|+.   .++|+|.+  +   .|++.+........|||.|.
T Consensus        21 ~~~~~~~~~~~~~a~~V~l~~~d~~~~~~~~~~~~M~~~~~~~~~~~w~~~i~~~~~~~~Y~f~i~   86 (583)
T 1ea9_C           21 TTVHLRIRTKKDDMTAVYALAGDKYMWDHTMEYVPMTKLATDELFDYWECEVTPPYRRVKYGFLLQ   86 (583)
T ss_dssp             SCEECCCEECTTCCSBEEEEEECSSSCTTTCEEEEECEEEECSSCEEECCEECCTTSCEEECBCCE
T ss_pred             CEEEEEEEECCCCccEEEEEECCCcCCCCcEEEEEEEEEeccCCeEEEEEEEECCCceEEEEEEEE
Confidence            4456666 47788999999 799999964   57998742  2   49998887777788888874

>1vem_A Beta-amylase; beta-alpha-barrels, optimum PH, hydrolase; HET: GLC; 1.85A {Bacillus cereus} SCOP: b.3.1.1 c.1.8.1 PDB: 1b90_A* 1j0y_A* 1j0z_A* 1j10_A* 1b9z_A* 1j12_A* 1j18_A* 1j11_A* 5bca_A 1veo_A* 1itc_A* 1ven_A* 1vep_A* 1cqy_A

Probab=95.03  E-value=0.054  Score=51.15  Aligned_cols=56  Identities=23%  Similarity=0.344  Sum_probs=44.7

Q ss_pred             CCceeEEEEEcC----CCCeEEEEeecC---CCccc---eeeee-eCC-cEEEEEEcCCc-eEEEEEEE
Q 028378           90 GVGIPTMITWSH----DGCEVAVEGSWD---NWKTR---IALQR-SGK-DFTIMKVLPSG-VYQYRFLV  145 (210)
Q Consensus        90 ~~~vpv~F~w~~----~g~~V~V~GSFd---nW~~~---ipM~r-s~~-~f~i~l~Lp~G-~YqYKFiV  145 (210)
                      .+.+.|+|+...    .|++|+|+||-.   +|+..   ++|.. ... .|++++.||.+ .++|||+|
T Consensus       417 ~~~v~V~F~v~~~~t~~Ge~v~vvGs~~eLG~W~~~~a~~~l~~~~~p~~W~~~v~lp~~~~~eYKyv~  485 (516)
T 1vem_A          417 VTPVMQTIVVKNVPTTIGDTVYITGNRAELGSWDTKQYPIQLYYDSHSNDWRGNVVLPAERNIEFKAFI  485 (516)
T ss_dssp             CCEEEEEEEEESCCCCTTCEEEEEESSGGGTTTCSSSSCEECEEETTTTEEEEEEEEETTCCEEEEEEE
T ss_pred             cCccceEEEEeeccCCCCCEEEEEeChhhhCCCChhhhceecccCCCCCEEEEEEEECCCCcEEEEEEE
Confidence            456889998653    589999999874   79974   46766 344 89999999988 59999998

>2fhf_A Pullulanase; multiple domain, beta-alpha-barrel, alpha-amylase-family, complex with maltotetraose, hydrolase; HET: GLC; 1.65A {Klebsiella aerogenes} SCOP: b.1.18.2 b.1.18.2 b.3.1.3 b.71.1.1 c.1.8.1 PDB: 2fh6_A* 2fh8_A* 2fhb_A* 2fhc_A* 2fgz_A*

Probab=95.03  E-value=0.044  Score=56.14  Aligned_cols=63  Identities=16%  Similarity=0.171  Sum_probs=47.5

Q ss_pred             EEEE-EcCCCCeEEEEe-ecCCCcc-ceeeeee--CCcEEEEEE-cCCceEEEEEEEc------C----eeecCCCCCee
Q 028378           95 TMIT-WSHDGCEVAVEG-SWDNWKT-RIALQRS--GKDFTIMKV-LPSGVYQYRFLVD------G----LWKYAPDLPST  158 (210)
Q Consensus        95 v~F~-w~~~g~~V~V~G-SFdnW~~-~ipM~rs--~~~f~i~l~-Lp~G~YqYKFiVD------G----~W~~Dp~~P~~  158 (210)
                      |+|+ |.+.+++|.|.+ ++++|.. +++|.+.  .+.|.+.+. +.+|.+ |+|.|+      |    ..+.||....+
T Consensus       306 v~F~vwAP~A~~V~L~l~d~~~~~~~~~~m~~~~~~GvW~~~v~~~~~G~~-Y~y~v~~~~p~~g~~~~~~~~DPYa~~~  384 (1083)
T 2fhf_A          306 VTFRVWAPTAQQVELVIYSADKKVIASHPMTRDSASGAWSWQGGSDLKGAF-YRYAMTVYHPQSRKVEQYEVTDPYAHSL  384 (1083)
T ss_dssp             EEEEEECTTCSEEEEEEECTTCCEEEEEECEECTTTCEEEEEECGGGTTCE-EEEEEEEEETTTTEEEEEEECCTTCSCB
T ss_pred             EEEEEECCCCCEEEEEEEcCCCCccceEECeECCCCCEEEEEECCCCCCCE-EEEEEEeecCCCCccccceecCCcccee
Confidence            6784 999999999999 8999975 5799863  468999875 677864 777774      4    34778866543

>2ya0_A Putative alkaline amylopullulanase; hydrolase, glycoside hydrolase; 1.85A {Streptococcus pneumoniae} PDB: 2ya2_A*

Probab=94.44  E-value=0.11  Score=50.42  Aligned_cols=63  Identities=21%  Similarity=0.302  Sum_probs=46.5

Q ss_pred             EEEE-EcCCCCeEEEEe-ecCCCcc---ceeeeee-CCcEEEEEEcC--Cc-----eEEEEEEEc--Ce--eecCCCCCe
Q 028378           95 TMIT-WSHDGCEVAVEG-SWDNWKT---RIALQRS-GKDFTIMKVLP--SG-----VYQYRFLVD--GL--WKYAPDLPS  157 (210)
Q Consensus        95 v~F~-w~~~g~~V~V~G-SFdnW~~---~ipM~rs-~~~f~i~l~Lp--~G-----~YqYKFiVD--G~--W~~Dp~~P~  157 (210)
                      |.|+ |.+.+++|.|.+ ++++|..   +++|.+. ++.|.+.+.-.  +|     -+.|+|.|+  |.  .+.||....
T Consensus        26 v~F~vwap~A~~V~l~l~~~~~~~~~~~~~~m~~~~~gvW~~~v~~~~~~g~~~~~g~~Y~y~v~~~~~~~~~~DPya~~  105 (714)
T 2ya0_A           26 VDLTLWSPSADKVSVVVYDKNDPDKVVGTVALEKGERGTWKQTLDSTNKLGITDFTGYYYQYQIERQGKTVLALDPYAKS  105 (714)
T ss_dssp             EEEEEECTTCSEEEEEEECSSCTTSEEEEEECEECGGGEEEEEECTTCSSSCSCCTTCEEEEEEEETTEEEEECCTTCSE
T ss_pred             EEEEEECCCCCEEEEEEEeCCCCCccceEEeCccCCCCEEEEEECCccCCCccccCCcEEEEEEEeCCceEEecCCceee
Confidence            6784 999999999999 8888863   5899875 35899987631  34     267888886  54  467886654

>3faw_A Reticulocyte binding protein; TIM barrel, beta barrel, hydrolase, cell WALL, peptidoglycan-anchor, secreted; 2.10A {Streptococcus agalactiae COH1} PDB: 3fax_A*

Probab=94.39  E-value=0.044  Score=54.93  Aligned_cols=63  Identities=17%  Similarity=0.173  Sum_probs=47.7

Q ss_pred             EEEE-EcCCCCeEEEEe-ecCCCcc---ceeeeee-CCcEEEEEEcCCce-----EEEEEEEc--Ce--eecCCCCCe
Q 028378           95 TMIT-WSHDGCEVAVEG-SWDNWKT---RIALQRS-GKDFTIMKVLPSGV-----YQYRFLVD--GL--WKYAPDLPS  157 (210)
Q Consensus        95 v~F~-w~~~g~~V~V~G-SFdnW~~---~ipM~rs-~~~f~i~l~Lp~G~-----YqYKFiVD--G~--W~~Dp~~P~  157 (210)
                      |.|+ |.+.|++|.|.+ ++++|..   +++|.+. ++.|.+.+.+.+|.     +.|+|.|+  |.  .+.||..-.
T Consensus       146 v~F~vwAP~A~~V~L~l~d~~~~~~~~~~~~m~~~~~gvW~~~v~~~~G~~~~~g~~Y~yrv~~~~~~~~~~DPYA~~  223 (877)
T 3faw_A          146 VEASLWSPSADSVTMIIYDKDNQNRVVATTPLVKNNKGVWQTILDTKLGIKNYTGYYYLYEIKRGKDKVKILDPYAKS  223 (877)
T ss_dssp             EEEEEECTTCSEEEEEEEETTEEEEEEEEEECEECTTSEEEEEECGGGTCSCCTTCEEEEEEEETTEEEEECCTTCSC
T ss_pred             EEEEEECCCCCEEEEEEEeCCCCccceeeeccccCCCCEEEEEECCCCCCccCCCeEEEEEEeeCCceeEecCcccee
Confidence            6885 899999999998 7888853   5899885 46899998766662     67888886  33  567887653

>3m07_A Putative alpha amylase; IDP00968, csgid, structural genomics, center for structural genomics of infectious diseases, unknown function; HET: BTB PG4 PGE; 1.40A {Salmonella enterica subsp}

Probab=94.37  E-value=0.15  Score=48.82  Aligned_cols=60  Identities=20%  Similarity=0.336  Sum_probs=45.6

Q ss_pred             EEE-EEcCCCCeEEEEeecCCCccceeeeeeC-CcEEEEEE-cCCceEEEEEEEc-CeeecCCCCCeee
Q 028378           95 TMI-TWSHDGCEVAVEGSWDNWKTRIALQRSG-KDFTIMKV-LPSGVYQYRFLVD-GLWKYAPDLPSTQ  159 (210)
Q Consensus        95 v~F-~w~~~g~~V~V~GSFdnW~~~ipM~rs~-~~f~i~l~-Lp~G~YqYKFiVD-G~W~~Dp~~P~~~  159 (210)
                      |+| .|.+.+++|.|++   +|. .++|+|.+ +.|.+.+. +.+|. .|||.|+ |..+.||......
T Consensus        44 ~~F~vwap~a~~v~l~~---~~~-~~~m~~~~~g~~~~~~~~~~~g~-~Y~y~v~~~~~~~DP~a~~~~  107 (618)
T 3m07_A           44 VRFRLWATGQQKVMLRL---AGK-DQEMQANGDGWFTLDVAGVTPGT-EYNFVLSDGMVVPDPASRAQK  107 (618)
T ss_dssp             EEEEEECTTCSCEEEEE---TTE-EEECEECSTTEEEEEEETCCTTC-EEEEEETTSCEECCTTCSCBS
T ss_pred             EEEEEECCCCCEEEEEE---CCC-cccCeecCCEEEEEEeCCCCCCC-EEEEEEeCCeEeccccceeee
Confidence            678 4899999999998   354 48999865 46888774 67775 5889995 5688899776543

>2wan_A Pullulanase; hydrolase, glycoside hydrolase, polysaccharide, amylase, starch, carbohydrate; 1.65A {Bacillus acidopullulyticus}

Probab=94.31  E-value=0.09  Score=52.70  Aligned_cols=62  Identities=16%  Similarity=0.260  Sum_probs=45.0

Q ss_pred             eEEE-EEcCCCCeEEEEeecCCCc----cceeeeeeC-CcEEEEEE-cCCceEEEEEEE--cCe--eecCCCCCe
Q 028378           94 PTMI-TWSHDGCEVAVEGSWDNWK----TRIALQRSG-KDFTIMKV-LPSGVYQYRFLV--DGL--WKYAPDLPS  157 (210)
Q Consensus        94 pv~F-~w~~~g~~V~V~GSFdnW~----~~ipM~rs~-~~f~i~l~-Lp~G~YqYKFiV--DG~--W~~Dp~~P~  157 (210)
                      -|+| .|.+.+++|.|.. |++|.    .+++|++.. +.|.+.+. +.+|. .|+|.|  +|.  .+.||....
T Consensus       326 gv~F~vwaP~A~~V~l~l-f~~~~~~~~~~~~m~~~~~gvW~~~v~~~~~g~-~Y~y~v~~~g~~~~~~DPya~~  398 (921)
T 2wan_A          326 ATSFRVWAPTASNVQLLL-YNSEKGSITKQLEMQKSDNGTWKLQVSGNLENW-YYLYQVTVNGTTQTAVDPYARA  398 (921)
T ss_dssp             EEEEEEECTTCSEEEEEE-ESSSSSCCSEEEECEECGGGEEEEEEESCCTTC-EEEEEEECSSCEEEECCTTCSS
T ss_pred             eEEEEEECCCCCEEEEEE-EeCCCCCcCeEEeCeeCCCCEEEEEEccCCCCC-EEEEEEEeCCeEEEecCCccee
Confidence            3677 4889999999997 99994    358999864 57999886 45664 366666  565  456776553

>1ji1_A Alpha-amylase I; beta/alpha barrel, hydrolase; 1.60A {Thermoactinomyces vulgaris} SCOP: b.1.18.2 b.71.1.1 c.1.8.1 PDB: 1uh3_A* 2d0f_A* 1izj_A 1uh4_A* 1uh2_A* 2d0g_A* 2d0h_A* 1izk_A

Probab=93.74  E-value=0.052  Score=51.63  Aligned_cols=53  Identities=9%  Similarity=0.139  Sum_probs=39.8

Q ss_pred             eEEEE-E----cCCCCeEEEEeecCCCc-cceeeee--eC-----CcEEEEEEcCCceEEEEEEEcC
Q 028378           94 PTMIT-W----SHDGCEVAVEGSWDNWK-TRIALQR--SG-----KDFTIMKVLPSGVYQYRFLVDG  147 (210)
Q Consensus        94 pv~F~-w----~~~g~~V~V~GSFdnW~-~~ipM~r--s~-----~~f~i~l~Lp~G~YqYKFiVDG  147 (210)
                      -|+|+ |    .+.+++|.|.+.|++ . .+++|++  ..     +.|++.+........|+|.|+|
T Consensus        31 ~v~f~v~~~~~ap~a~~V~l~~~~~~-~~~~~~m~~~~~~~~~~~~~w~~~i~~~~~g~~Y~f~i~~   96 (637)
T 1ji1_A           31 SVTLKLRTFKGDITSANIKYWDTADN-AFHWVPMVWDSNDPTGTFDYWKGTIPASPSIKYYRFQIND   96 (637)
T ss_dssp             CEEEEEEEETTCCSEEEEEEEETTTT-EEEEEECEEEEECTTSSEEEEEEEECCCSSCEEEEEEEEE
T ss_pred             EEEEEEEEecCcCCeeEEEEEEecCC-CEEEEEeEEeeccccCCeeEEEEEEECCCceEEEEEEEEE
Confidence            46774 7    567899999999864 3 2589988  32     4699988876667789999974

>1gcy_A Glucan 1,4-alpha-maltotetrahydrolase; beta-alpha-barrel, beta sheet; 1.60A {Pseudomonas stutzeri} SCOP: b.71.1.1 c.1.8.1 PDB: 1jdc_A* 1jda_A* 1jdd_A* 1qi5_A* 1qi3_A* 1qi4_A* 2amg_A 1qpk_A*

Probab=93.33  E-value=0.015  Score=54.14  Aligned_cols=56  Identities=20%  Similarity=0.335  Sum_probs=0.0

Q ss_pred             CCceeEEEEE-c---CCCCeEEEEeecC---CCcc--ceeee-e-eCCcEEEEEEcCCc-eEEEEEEE
Q 028378           90 GVGIPTMITW-S---HDGCEVAVEGSWD---NWKT--RIALQ-R-SGKDFTIMKVLPSG-VYQYRFLV  145 (210)
Q Consensus        90 ~~~vpv~F~w-~---~~g~~V~V~GSFd---nW~~--~ipM~-r-s~~~f~i~l~Lp~G-~YqYKFiV  145 (210)
                      ...+.|+|+. .   ..|++|+|+||-.   +|++  .++|. . ....|++++.||.| .++|||+|
T Consensus       428 ~~~v~v~F~v~~~~t~~G~~v~v~G~~~~LG~W~~~~a~~l~~~~~~~~W~~~v~lp~~~~~eyKy~~  495 (527)
T 1gcy_A          428 GALVSVSFRCDNGATQMGDSVYAVGNVSQLGNWSPAAALRLTDTSGYPTWKGSIALPAGQNEEWKCLI  495 (527)
T ss_dssp             --------------------------------------------------------------------
T ss_pred             CCEEEEEEEEecccCCCCCeEEEEcChhHhCCCCcccCccCccCCCCCeEEEEEEeCCCCcEEEEEEE
Confidence            3457888886 3   3589999999885   7997  46887 3 34589999999988 69999997

>2wan_A Pullulanase; hydrolase, glycoside hydrolase, polysaccharide, amylase, starch, carbohydrate; 1.65A {Bacillus acidopullulyticus}

Probab=92.20  E-value=0.33  Score=48.67  Aligned_cols=60  Identities=25%  Similarity=0.549  Sum_probs=45.0

Q ss_pred             CceeEEEEEcCCCCeEEEEeec-------CCCccc---eeeee-eCCcEEEEEEcCCceEEEEEEEcCeee
Q 028378           91 VGIPTMITWSHDGCEVAVEGSW-------DNWKTR---IALQR-SGKDFTIMKVLPSGVYQYRFLVDGLWK  150 (210)
Q Consensus        91 ~~vpv~F~w~~~g~~V~V~GSF-------dnW~~~---ipM~r-s~~~f~i~l~Lp~G~YqYKFiVDG~W~  150 (210)
                      .+++|..--......+.|.|+|       .+|++.   .-|++ .++.|+.+..||+|.|+||+.++|.|.
T Consensus       151 ~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~w~p~~~~~~~~~~~~~~y~~~~~l~~g~y~~kv~~~~~w~  221 (921)
T 2wan_A          151 EKIPVTSAVSANPVTAVLVGDLQQALGAANNWSPDDDHTLLKKINPNLYQLSGTLPAGTYQYKIALDHSWN  221 (921)
T ss_dssp             CEECEEEEEECCCCCEEEEETTSGGGTCSSSSCTTCGGGBCEEEETTEEEEEEEECSEEEEEEEEETTSSS
T ss_pred             ccccccccccccccccccccchhhhccccccCCCCCCcceeeccCCcceeeeeccCCcceeEEEeecCccc
Confidence            3567766666666778888866       568863   24554 356899888999999999999998774

>2ya1_A Putative alkaline amylopullulanase; hydrolase, glycoside hydrolase; HET: BGC GLC; 2.25A {Streptococcus pneumoniae}

Probab=91.93  E-value=0.28  Score=49.78  Aligned_cols=62  Identities=19%  Similarity=0.295  Sum_probs=45.0

Q ss_pred             EEEE-EcCCCCeEEEEe-ecCCCcc---ceeeeee-CCcEEEEEEcC--Cc-----eEEEEEEEc--Ce--eecCCCCC
Q 028378           95 TMIT-WSHDGCEVAVEG-SWDNWKT---RIALQRS-GKDFTIMKVLP--SG-----VYQYRFLVD--GL--WKYAPDLP  156 (210)
Q Consensus        95 v~F~-w~~~g~~V~V~G-SFdnW~~---~ipM~rs-~~~f~i~l~Lp--~G-----~YqYKFiVD--G~--W~~Dp~~P  156 (210)
                      |.|+ |.+.+++|.|++ ++++|..   +++|.+. ++.|.+.+...  +|     -+.|+|.|+  |.  ...||...
T Consensus       333 v~F~vwAP~A~~V~L~l~d~~~~~~~~~~~~m~~~~~gvW~~~v~~~~~~g~~~~~G~~Y~y~i~~~~~~~~~~DPYa~  411 (1014)
T 2ya1_A          333 VDLTLWSPSADKVSVVVYDKNDPDKVVGTVALEKGERGTWKQTLDSTNKLGITDFTGYYYQYQIERQGKTVLALDPYAK  411 (1014)
T ss_dssp             EEEEEECTTCSEEEEEEECSSCTTSEEEEEECEECGGGEEEEEECTTCSSCCSCCTTCEEEEEEEETTEEEEECCTTCS
T ss_pred             EEEEEECCCCCEEEEEEEECCCCCccceEEecccCCCCEEEEEEcccccCCccccCCcEEEEEEEeCCeEEEecCccce
Confidence            6784 899999999999 8888863   5899874 35899987632  23     256777775  54  56788654

>2c3v_A Alpha-amylase G-6; carbohydrate-binding module, starch binding, carbohydrate binding, glycoside hydrolase, amylose, amylopectin; HET: TYI; 1.39A {Bacillus halodurans} PDB: 2c3v_B* 2c3w_A* 2c3x_A*

Probab=88.22  E-value=1.6  Score=32.90  Aligned_cols=63  Identities=16%  Similarity=0.280  Sum_probs=42.0

Q ss_pred             ceeEEEEEcCCCCeEEEEeecC--CCcc--ceeeeee-CCc-EEEEEEcCCc-eEEEEEEEcC--eeecCCCC
Q 028378           92 GIPTMITWSHDGCEVAVEGSWD--NWKT--RIALQRS-GKD-FTIMKVLPSG-VYQYRFLVDG--LWKYAPDL  155 (210)
Q Consensus        92 ~vpv~F~w~~~g~~V~V~GSFd--nW~~--~ipM~rs-~~~-f~i~l~Lp~G-~YqYKFiVDG--~W~~Dp~~  155 (210)
                      .--+++.+..+.++|+|==.+.  +|+.  .++|.+. ... |.++|.|+.+ .++|+| -||  .|-.....
T Consensus         9 g~~vTvyY~sg~~~~ylHy~~~~g~Wt~vpgv~M~~~~~~Gw~~~TI~~~~~~~l~~~F-~dG~~~WDNN~g~   80 (102)
T 2c3v_A            9 ATDITIYYKTGWTHPHIHYSLNQGAWTTLPGVPLTKSEXEGXVKVTIEAEEGSQLRAAF-NNGSGQWDNNQGR   80 (102)
T ss_dssp             CCSEEEEEECCCSSCEEEEEETTCCBCCTTCEECEECSSTTEEEEEECCCTTCEEEEEE-ECSSSCEECGGGT
T ss_pred             CCEEEEEEcCCCCcEEEEEeCCCCCcccCCCcCccccccCCceEEEEecCCCceEEEEE-eCCCcccccCCCc
Confidence            4455666667778887764453  4775  4799985 344 5799999965 888988 454  48654433

>4fch_A Outer membrane protein SUSE; starch binding, extracellular, carbohydrate-B protein; HET: GLC; 1.30A {Bacteroides thetaiotaomicron}

Probab=82.05  E-value=1.7  Score=35.94  Aligned_cols=47  Identities=11%  Similarity=0.007  Sum_probs=36.4

Q ss_pred             CCeEEEEeecCCCc--cceeeeeeC---CcEEEEEEcCCceEEEEEEEcCeee
Q 028378          103 GCEVAVEGSWDNWK--TRIALQRSG---KDFTIMKVLPSGVYQYRFLVDGLWK  150 (210)
Q Consensus       103 g~~V~V~GSFdnW~--~~ipM~rs~---~~f~i~l~Lp~G~YqYKFiVDG~W~  150 (210)
                      .++++|+|++.+|.  ...+|.+..   +.|..++.|+.|. +|||.-+..|-
T Consensus        12 p~~lY~vG~~~gW~~~~~~~m~~~~~~~g~y~~~~yl~ag~-~fKf~~~~~~~   63 (221)
T 4fch_A           12 PKTMFIVGSMLDTDWKVWKPMAGVYGMDGQFYSMIYFDANS-EFKFGTKENEY   63 (221)
T ss_dssp             CSCCEEEETTTCTTSCCEEECEECTTCTTEEEEEEEECTTE-EEEEESSTTCC
T ss_pred             cceEEEEecCCCCCCCccceeeeccCCCceEEEEEEEcCCC-eEEEeeccCcc
Confidence            46899999999886  346787753   4799999998774 89999876553

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	210
d1z0na1	87	b.1.18.21 (A:77-163) 5'-AMP-activated protein kina	4e-23
d2qlvb1	87	b.1.18.21 (B:161-247) SIP2 {Saccharomyces cerevisi	9e-18

>d1z0na1 b.1.18.21 (A:77-163) 5'-AMP-activated protein kinase subunit beta-1 {Rattus norvegicus [TaxId: 10116]} Length = 87

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: E set domains
family: AMPK-beta glycogen binding domain-like
domain: 5'-AMP-activated protein kinase subunit beta-1
species: Rattus norvegicus [TaxId: 10116]

 Score = 86.9 bits (215), Expect = 4e-23
 Identities = 29/79 (36%), Positives = 45/79 (56%), Gaps = 1/79 (1%)

Query: 94  PTMITWSHDGCEVAVEGSWDNWKTRIALQRSGKDFTIMKVLPSGVYQYRFLVDGLWKYAP 153
           PT+  W+  G EV + GS++NW  ++ + RS  +F  +  LP G +QY+F VDG W + P
Sbjct: 3   PTVFRWTGGGKEVYLSGSFNNWS-KLPMTRSQNNFVAILDLPEGEHQYKFFVDGQWTHDP 61

Query: 154 DLPSTQDDDGNVYNILDLQ 172
             P      G V NI+ ++
Sbjct: 62  SEPIVTSQLGTVNNIIQVK 80

>d2qlvb1 b.1.18.21 (B:161-247) SIP2 {Saccharomyces cerevisiae [TaxId: 4932]} Length = 87

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: E set domains
family: AMPK-beta glycogen binding domain-like
domain: SIP2
species: Saccharomyces cerevisiae [TaxId: 4932]

 Score = 72.8 bits (178), Expect = 9e-18
 Identities = 24/83 (28%), Positives = 41/83 (49%), Gaps = 3/83 (3%)

Query: 93  IPTMITWSHDGCEVAVEGSWDNWKTRIALQRSGKD---FTIMKVLPSGVYQYRFLVDGLW 149
           +P  I W   G +V V GS+  W+  I L     +   F +   L  G +++RF+VD   
Sbjct: 4   VPVEIRWQQGGSKVYVTGSFTKWRKMIGLIPDSDNNGSFHVKLRLLPGTHRFRFIVDNEL 63

Query: 150 KYAPDLPSTQDDDGNVYNILDLQ 172
           + +  LP+  D  GN  N ++++
Sbjct: 64  RVSDFLPTATDQMGNFVNYIEVR 86

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	210
d1z0na1	87	5'-AMP-activated protein kinase subunit beta-1 {Ra	99.95
d2qlvb1	87	SIP2 {Saccharomyces cerevisiae [TaxId: 4932]}	99.95
d2bhua1	97	Glycosyltrehalose trehalohydrolase, N-terminal dom	98.58
d1m7xa1	110	1,4-alpha-glucan branching enzyme, N-terminal doma	98.46
d1kula_	108	Glucoamylase, granular starch-binding domain {Aspe	97.94
d1cyga2	106	Cyclodextrin glycosyltransferase, C-terminal domai	97.75
d3bmva2	105	Cyclodextrin glycosyltransferase, C-terminal domai	97.74
d1qhoa2	110	Cyclodextrin glycosyltransferase, C-terminal domai	97.65
d1vema1	99	beta-amylase {Bacillus cereus [TaxId: 1396]}	97.43
d1eh9a1	90	Glycosyltrehalose trehalohydrolase, N-terminal dom	97.21
d2fhfa1	115	Pullulanase PulA {Klebsiella pneumoniae [TaxId: 57	95.95
d1bf2a1	162	Isoamylase, N-terminal domain N {Pseudomonas amylo	95.8
d3c8da1	145	Enterochelin esterase {Shigella flexneri 2a str. 2	91.96
d1wzla1	120	Maltogenic amylase, N-terminal domain N {Thermoact	83.24
d1ji1a1	122	Maltogenic amylase, N-terminal domain N {Thermoact	80.29
d1j0ha1	123	Neopullulanase, N-terminal domain {Bacillus stearo	80.02

>d1z0na1 b.1.18.21 (A:77-163) 5'-AMP-activated protein kinase subunit beta-1 {Rattus norvegicus [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: E set domains
family: AMPK-beta glycogen binding domain-like
domain: 5'-AMP-activated protein kinase subunit beta-1
species: Rattus norvegicus [TaxId: 10116]

Probab=99.95  E-value=1.3e-28  Score=181.59  Aligned_cols=81  Identities=36%  Similarity=0.737  Sum_probs=77.3

Q ss_pred             ceeEEEEEcCCCCeEEEEeecCCCccceeeeeeCCcEEEEEEcCCceEEEEEEEcCeeecCCCCCeeeCCCCCeeEEEEc
Q 028378           92 GIPTMITWSHDGCEVAVEGSWDNWKTRIALQRSGKDFTIMKVLPSGVYQYRFLVDGLWKYAPDLPSTQDDDGNVYNILDL  171 (210)
Q Consensus        92 ~vpv~F~w~~~g~~V~V~GSFdnW~~~ipM~rs~~~f~i~l~Lp~G~YqYKFiVDG~W~~Dp~~P~~~D~~G~~NNvI~V  171 (210)
                      ++||+|+|+++|++|+|+|||++|++ .+|.++++.|++++.|++|.|+|||+|||+|++|+++|++.|..|+.||+|.|
T Consensus         1 ~~P~~f~w~~~a~~V~v~Gsfn~W~~-~~~~~~~g~~~~tl~L~~G~y~YKFiVDG~w~~d~~~~~~~d~~G~~Nnvi~V   79 (87)
T d1z0na1           1 ARPTVFRWTGGGKEVYLSGSFNNWSK-LPMTRSQNNFVAILDLPEGEHQYKFFVDGQWTHDPSEPIVTSQLGTVNNIIQV   79 (87)
T ss_dssp             CEEEEEEECSCCSCEEEEEGGGTTCC-EECEEETTEEEEEEEECSEEEEEEEEETTEEECCTTSCEEECTTSCEEEEEEE
T ss_pred             CCCEEEEEcCCCEEEEEEEEeCCCCc-cccccCCCcEEEEEECCCceEEEEEEECCEEEeCCCCCeeECCCCCEEEEEEE
Confidence            47999999999999999999999985 78999999999999999999999999999999999999999999999999999


Q ss_pred             CC
Q 028378          172 QV  173 (210)
Q Consensus       172 ~d  173 (210)
                      .+
T Consensus        80 ~~   81 (87)
T d1z0na1          80 KK   81 (87)
T ss_dssp             CS
T ss_pred             CC
Confidence            74

>d2qlvb1 b.1.18.21 (B:161-247) SIP2 {Saccharomyces cerevisiae [TaxId: 4932]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: E set domains
family: AMPK-beta glycogen binding domain-like
domain: SIP2
species: Saccharomyces cerevisiae [TaxId: 4932]

Probab=99.95  E-value=1.7e-28  Score=180.25  Aligned_cols=82  Identities=29%  Similarity=0.578  Sum_probs=76.1

Q ss_pred             ceeEEEEEcCCCCeEEEEeecCCCccceeeeee---CCcEEEEEEcCCceEEEEEEEcCeeecCCCCCeeeCCCCCeeEE
Q 028378           92 GIPTMITWSHDGCEVAVEGSWDNWKTRIALQRS---GKDFTIMKVLPSGVYQYRFLVDGLWKYAPDLPSTQDDDGNVYNI  168 (210)
Q Consensus        92 ~vpv~F~w~~~g~~V~V~GSFdnW~~~ipM~rs---~~~f~i~l~Lp~G~YqYKFiVDG~W~~Dp~~P~~~D~~G~~NNv  168 (210)
                      .|||+|+|.++|++|+|+||||||+..++|.+.   ++.|++++.|++|+|+|||+|||+|++||++|++.|+.|+.||+
T Consensus         3 ~vpv~f~w~~~g~~V~v~GsFn~W~~~~~~~~~~~~~g~~~~~l~l~~G~y~YKFiVDG~w~~d~~~p~~~d~~G~~nnv   82 (87)
T d2qlvb1           3 MVPVEIRWQQGGSKVYVTGSFTKWRKMIGLIPDSDNNGSFHVKLRLLPGTHRFRFIVDNELRVSDFLPTATDQMGNFVNY   82 (87)
T ss_dssp             CEEEEEEECSCCSCEEEEEGGGTTSSCEECEECSSSTTCEEEEEEECSEEEEEEEEETTEEECCTTSCEEBCSSCCCEEE
T ss_pred             EEEEEEEECCCCeEEEEEEEecCcCcccccccccCCCccEEEEEeCCCCCEEEEEEECCcEEcCCCCCeeECCCCCEeEE
Confidence            689999999999999999999999987777653   35799999999999999999999999999999999999999999


Q ss_pred             EEcCC
Q 028378          169 LDLQV  173 (210)
Q Consensus       169 I~V~d  173 (210)
                      |+|++
T Consensus        83 i~V~~   87 (87)
T d2qlvb1          83 IEVRQ   87 (87)
T ss_dssp             EEECC
T ss_pred             EEEEC
Confidence            99974

>d2bhua1 b.1.18.2 (A:14-110) Glycosyltrehalose trehalohydrolase, N-terminal domain N {Deinococcus radiodurans [TaxId: 1299]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: E set domains
family: E-set domains of sugar-utilizing enzymes
domain: Glycosyltrehalose trehalohydrolase, N-terminal domain N
species: Deinococcus radiodurans [TaxId: 1299]

Probab=98.58  E-value=4.6e-08  Score=72.06  Aligned_cols=62  Identities=21%  Similarity=0.265  Sum_probs=50.8

Q ss_pred             eEEEE-EcCCCCeEEEEeecCCCccceeeeeeC-CcEEEEEEcCCceEEEEEEEcCeeecCCCCCeeeC
Q 028378           94 PTMIT-WSHDGCEVAVEGSWDNWKTRIALQRSG-KDFTIMKVLPSGVYQYRFLVDGLWKYAPDLPSTQD  160 (210)
Q Consensus        94 pv~F~-w~~~g~~V~V~GSFdnW~~~ipM~rs~-~~f~i~l~Lp~G~YqYKFiVDG~W~~Dp~~P~~~D  160 (210)
                      -|+|+ |.+.+++|.|.+++.    .++|+|.+ +.|.+++.+.+|.+ |||+|||.|+.||......+
T Consensus        22 g~~FrvwAP~A~~V~l~~~~~----~~~m~~~~~G~w~~~~~~~~G~~-Y~y~vdg~~~~DPyar~~~~   85 (97)
T d2bhua1          22 GTRFRLWTSTARTVAVRVNGT----EHVMTSLGGGIYELELPVGPGAR-YLFVLDGVPTPDPYARFLPD   85 (97)
T ss_dssp             CEEEEEECSSCSSEEEEETTE----EEECEEEETTEEEEEESCCTTCE-EEEEETTEEECCTTCSCCTT
T ss_pred             eEEEEEECCCCCEeEEEeeCC----ccCCEEccCEEEEEEcCCCCCCE-EEEEECCeEccCCchhcCCC
Confidence            47885 899999999999643    46899865 57999999999975 99999999999998765433

>d1m7xa1 b.1.18.2 (A:117-226) 1,4-alpha-glucan branching enzyme, N-terminal domain N {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: E set domains
family: E-set domains of sugar-utilizing enzymes
domain: 1,4-alpha-glucan branching enzyme, N-terminal domain N
species: Escherichia coli [TaxId: 562]

Probab=98.46  E-value=2.8e-07  Score=68.50  Aligned_cols=64  Identities=16%  Similarity=0.332  Sum_probs=49.6

Q ss_pred             EEEE-EcCCCCeEEEEeecCCCcc-ceeeeee--CCcEEEEEEcCCceEEEEEEE---cCeee--cCCCCCee
Q 028378           95 TMIT-WSHDGCEVAVEGSWDNWKT-RIALQRS--GKDFTIMKVLPSGVYQYRFLV---DGLWK--YAPDLPST  158 (210)
Q Consensus        95 v~F~-w~~~g~~V~V~GSFdnW~~-~ipM~rs--~~~f~i~l~Lp~G~YqYKFiV---DG~W~--~Dp~~P~~  158 (210)
                      |+|+ |.+.|++|+|+|+||+|.. ..+|.+.  .+.|.+.+.....-..|||.|   ||+|.  .||-+-..
T Consensus        22 v~FrvwAP~A~~V~l~gdfn~~~~~~~~m~~~~~~G~W~~~i~~~~~G~~Y~y~v~~~~G~~~~~~DPYA~~~   94 (110)
T d1m7xa1          22 TRFSVWAPNARRVSVVGQFNYWDGRRHPMRLRKESGIWELFIPGAHNGQLYKYEMIDANGNLRLKSDPYAFEA   94 (110)
T ss_dssp             EEEEEECSSCSCEEEEEGGGTSCTTTCBCCCCTTTTEEEEEEETCCTTCEEEEEEECTTSCEEEECCTTCSSE
T ss_pred             EEEEEECCCCCEEEEEEECCCCCCceEEeEEecCCCcEEEEecCCCCCCEEEEEEEcCCCcEeEEcChhhccc
Confidence            7885 9999999999999999975 4688653  357999998665556778877   78866  48876644

>d1kula_ b.3.1.1 (A:) Glucoamylase, granular starch-binding domain {Aspergillus niger [TaxId: 5061]}

class: All beta proteins
fold: Prealbumin-like
superfamily: Starch-binding domain-like
family: Starch-binding domain
domain: Glucoamylase, granular starch-binding domain
species: Aspergillus niger [TaxId: 5061]

Probab=97.94  E-value=1.2e-05  Score=59.19  Aligned_cols=56  Identities=23%  Similarity=0.499  Sum_probs=45.2

Q ss_pred             CCceeEEEEEcC---CCCeEEEEeecC---CCcc--ceeeeee-----CCcEEEEEEcCCc-eEEEEEEE
Q 028378           90 GVGIPTMITWSH---DGCEVAVEGSWD---NWKT--RIALQRS-----GKDFTIMKVLPSG-VYQYRFLV  145 (210)
Q Consensus        90 ~~~vpv~F~w~~---~g~~V~V~GSFd---nW~~--~ipM~rs-----~~~f~i~l~Lp~G-~YqYKFiV  145 (210)
                      ...+.|+|....   .|+.|+|+||..   +|+.  .++|...     +..|++.+.|+.| .++|||+|
T Consensus         4 ~~~v~V~F~v~~~t~~Gq~v~vvGs~~~LG~W~~~~a~~l~~~~~~~~~~~w~~~v~~~~~~~~eYKyvi   73 (108)
T d1kula_           4 PTAVAVTFDLTATTTYGENIYLVGSISQLGDWETSDGIALSADKYTSSDPLWYVTVTLPAGESFEYKFIR   73 (108)
T ss_dssp             TTCCCEEEECCCCCCSSCEEEEECSSGGGTTTCTTTSEECBCTTCSSSSCCCBCEECCCSCCEECCEEEE
T ss_pred             CCEEEEEEEEEeEcCCCCEEEEEeChHHhCCCCHHHCccceEccccCCCCCEEEEEEeCCCCeEEEEEEE
Confidence            456889998773   589999999974   8986  4678643     3479999999988 69999998

>d1cyga2 b.3.1.1 (A:575-680) Cyclodextrin glycosyltransferase, C-terminal domain {Bacillus stearothermophilus [TaxId: 1422]}

class: All beta proteins
fold: Prealbumin-like
superfamily: Starch-binding domain-like
family: Starch-binding domain
domain: Cyclodextrin glycosyltransferase, C-terminal domain
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=97.75  E-value=5.8e-05  Score=55.20  Aligned_cols=55  Identities=18%  Similarity=0.349  Sum_probs=44.5

Q ss_pred             CceeEEEEEc----CCCCeEEEEeec---CCCcc--ceeeeeeC-----CcEEEEEEcCCc-eEEEEEEE
Q 028378           91 VGIPTMITWS----HDGCEVAVEGSW---DNWKT--RIALQRSG-----KDFTIMKVLPSG-VYQYRFLV  145 (210)
Q Consensus        91 ~~vpv~F~w~----~~g~~V~V~GSF---dnW~~--~ipM~rs~-----~~f~i~l~Lp~G-~YqYKFiV  145 (210)
                      ..|+|+|...    ..|+.|+|+||.   .+|+.  .++|....     ..|.+.+.|+.| .++|||+|
T Consensus         4 ~~v~V~F~v~~~~t~~Gq~v~vvGs~~~LG~W~~~~a~~l~~~~~~~~~~~w~~~v~~~~~~~~eYKyvi   73 (106)
T d1cyga2           4 DQVSVRFVVNNATTNLGQNIYIVGNVYELGNWDTSKAIGPMFNQVVYSYPTWYIDVSVPEGKTIEFKFIK   73 (106)
T ss_dssp             CEEEEEEEEESCCCCSSCEEEEEESSGGGBTTCGGGCBCCCBCSSSSCTTCEEEEEEEESSCEEEEEEEE
T ss_pred             CEEEEEEEEcceEcCCCCEEEEEcCHHHHCCCCHHHCccceeccCcCCCCeEEEEEEeCCCCeEEEEEEE
Confidence            4689999874    368999999996   68986  36887642     358899999998 79999998

>d3bmva2 b.3.1.1 (A:579-683) Cyclodextrin glycosyltransferase, C-terminal domain {Thermoanaerobacterium [TaxId: 28895]}

class: All beta proteins
fold: Prealbumin-like
superfamily: Starch-binding domain-like
family: Starch-binding domain
domain: Cyclodextrin glycosyltransferase, C-terminal domain
species: Thermoanaerobacterium [TaxId: 28895]

Probab=97.74  E-value=3.9e-05  Score=56.22  Aligned_cols=56  Identities=21%  Similarity=0.305  Sum_probs=44.4

Q ss_pred             CceeEEEEEc----CCCCeEEEEeecC---CCcc--ceeeeeeC-----CcEEEEEEcCCc-eEEEEEEEc
Q 028378           91 VGIPTMITWS----HDGCEVAVEGSWD---NWKT--RIALQRSG-----KDFTIMKVLPSG-VYQYRFLVD  146 (210)
Q Consensus        91 ~~vpv~F~w~----~~g~~V~V~GSFd---nW~~--~ipM~rs~-----~~f~i~l~Lp~G-~YqYKFiVD  146 (210)
                      ..+.|+|+-.    ..|+.|+|+|+..   +|+.  .++|..+.     +.|++.+.||+| .++|||++.
T Consensus         4 ~~v~V~F~v~~~~t~~Gq~v~vvGs~~~LG~W~~~~a~~l~~~~~~~~~~~W~~~v~lp~~~~~eYKyv~~   74 (105)
T d3bmva2           4 NQICVRFVVNNASTVYGENVYLTGNVAELGNWDTSKAIGPMFNQVVYQYPTWYYDVSVPAGTTIQFKFIKK   74 (105)
T ss_dssp             SEEEEEEEEESCCCCTTCEEEEEESSGGGTTTCGGGCBCSCBCSSSSCTTSEEEEEEEETTCEEEEEEEEE
T ss_pred             CEEEEEEEEcccccCCCCEEEEEeCcHHHCCCCHHHCcccccccccCCCCeEEEEEEECCCCeEEEEEEEE
Confidence            4588999875    2689999999965   8985  46787542     369999999999 599999983

>d1qhoa2 b.3.1.1 (A:577-686) Cyclodextrin glycosyltransferase, C-terminal domain {Bacillus stearothermophilus, maltogenic alpha-amylase [TaxId: 1422]}

class: All beta proteins
fold: Prealbumin-like
superfamily: Starch-binding domain-like
family: Starch-binding domain
domain: Cyclodextrin glycosyltransferase, C-terminal domain
species: Bacillus stearothermophilus, maltogenic alpha-amylase [TaxId: 1422]

Probab=97.65  E-value=5.5e-05  Score=55.66  Aligned_cols=54  Identities=22%  Similarity=0.452  Sum_probs=41.9

Q ss_pred             ceeEEEEEc-----CCCCeEEEEeecC---CCccc--eeeeeeC--------CcEEEEEEcCCc-eEEEEEEE
Q 028378           92 GIPTMITWS-----HDGCEVAVEGSWD---NWKTR--IALQRSG--------KDFTIMKVLPSG-VYQYRFLV  145 (210)
Q Consensus        92 ~vpv~F~w~-----~~g~~V~V~GSFd---nW~~~--ipM~rs~--------~~f~i~l~Lp~G-~YqYKFiV  145 (210)
                      .+.|+|+..     ..|+.|+|+|+..   +|+..  ++|+..+        +.|++++.||.| .++|||+|
T Consensus         5 ~~~V~f~v~~~~~T~~Gq~v~ivG~~~~LG~W~~~~a~~l~~~~~~~~~~~~~~W~~~v~lp~~~~~eYKyvi   77 (110)
T d1qhoa2           5 QTSVVFTVKSAPPTNLGDKIYLTGNIPELGNWSTDTSGAVNNAQGPLLAPNYPDWFYVFSVPAGKTIQFKFFI   77 (110)
T ss_dssp             EEEEEEEEESCCCCCTTCEEEEEESSGGGTTTCCCCSSCSSCCBCCCBCTTTTSEEEEEEEETTCEEEEEEEE
T ss_pred             ceEEEEEEeCcccCCCCCEEEEEeCcHHHCCCChhhccccccccCccccccCCeEEEEEEECCCCEEEEEEEE
Confidence            456777775     2589999999975   89874  5676532        259999999998 69999987

>d1vema1 b.3.1.1 (A:418-516) beta-amylase {Bacillus cereus [TaxId: 1396]}

class: All beta proteins
fold: Prealbumin-like
superfamily: Starch-binding domain-like
family: Starch-binding domain
domain: beta-amylase
species: Bacillus cereus [TaxId: 1396]

Probab=97.43  E-value=0.0002  Score=51.89  Aligned_cols=53  Identities=21%  Similarity=0.318  Sum_probs=39.4

Q ss_pred             eeEEEEEc----CCCCeEEEEeecC---CCccc--eee-e-eeC-CcEEEEEEcCCc-eEEEEEEE
Q 028378           93 IPTMITWS----HDGCEVAVEGSWD---NWKTR--IAL-Q-RSG-KDFTIMKVLPSG-VYQYRFLV  145 (210)
Q Consensus        93 vpv~F~w~----~~g~~V~V~GSFd---nW~~~--ipM-~-rs~-~~f~i~l~Lp~G-~YqYKFiV  145 (210)
                      ++++|.-.    ..|+.|+|+|+..   +|+..  ..| . ... ..|++.+.||+| .++|||+|
T Consensus         3 v~~~~~v~~~~T~~Gq~v~vvGs~~eLG~W~~~ka~~l~~~~~~~~~W~~~v~lp~~~~~eYKyvi   68 (99)
T d1vema1           3 VMQTIVVKNVPTTIGDTVYITGNRAELGSWDTKQYPIQLYYDSHSNDWRGNVVLPAERNIEFKAFI   68 (99)
T ss_dssp             EEEEEEEESCCCCTTCEEEEEESSGGGTTTCSSSSCEECEEETTTTEEEEEEEEETTCCEEEEEEE
T ss_pred             eeEEEEEeeeEcCCCCEEEEEeCcHHHCCCChhhheeeeeccCCCCCEEEEEEEcCCCcEEEEEEE
Confidence            45666554    3689999999987   99863  222 2 222 369999999998 69999998

>d1eh9a1 b.1.18.2 (A:1-90) Glycosyltrehalose trehalohydrolase, N-terminal domain N {Archaeon Sulfolobus solfataricus, km1 [TaxId: 2287]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: E set domains
family: E-set domains of sugar-utilizing enzymes
domain: Glycosyltrehalose trehalohydrolase, N-terminal domain N
species: Archaeon Sulfolobus solfataricus, km1 [TaxId: 2287]

Probab=97.21  E-value=5.9e-05  Score=54.01  Aligned_cols=59  Identities=15%  Similarity=0.187  Sum_probs=45.8

Q ss_pred             EEE-EEcCCCCeEEEEeecCCCccceeeeeeC-CcEEEEEE-cCCceEEEEEEEcCe-eecCCCCCe
Q 028378           95 TMI-TWSHDGCEVAVEGSWDNWKTRIALQRSG-KDFTIMKV-LPSGVYQYRFLVDGL-WKYAPDLPS  157 (210)
Q Consensus        95 v~F-~w~~~g~~V~V~GSFdnW~~~ipM~rs~-~~f~i~l~-Lp~G~YqYKFiVDG~-W~~Dp~~P~  157 (210)
                      |+| .|.+.+++|.|.+...++   ++|++.+ +.|++.+. +.+| +.|||.|||. .+.||....
T Consensus        11 v~FrvwAP~A~~V~l~~~~~~~---~~m~~~~~G~W~~~v~~~~~G-~~Y~y~v~~~~~~~DP~s~~   73 (90)
T d1eh9a1          11 VIFTLWAPYQKSVKLKVLEKGL---YEMERDEKGYFTITLNNVKVR-DRYKYVLDDASEIPDPASRY   73 (90)
T ss_dssp             EECCEECTTCSCCBCCCSSSCC---CCCCCCTTSEECCEESSCCSC-CEECEECTTSCEECCTTCSC
T ss_pred             EEEEEECCCCCEEEEEeecCCc---ccceeCCCCEEEEEeCCCCCC-ceeEEEEeCCcCcCCccHhc
Confidence            688 489999999999865433   6798865 58999985 6777 6699999875 677886653

>d2fhfa1 b.1.18.2 (A:288-402) Pullulanase PulA {Klebsiella pneumoniae [TaxId: 573]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: E set domains
family: E-set domains of sugar-utilizing enzymes
domain: Pullulanase PulA
species: Klebsiella pneumoniae [TaxId: 573]

Probab=95.95  E-value=0.0086  Score=43.56  Aligned_cols=52  Identities=15%  Similarity=0.221  Sum_probs=34.0

Q ss_pred             EEEE-EcCCCCeEEEEeecCCCcc--ceeeee-e-CCcEEEEEE-cCCceEEEEEEEcC
Q 028378           95 TMIT-WSHDGCEVAVEGSWDNWKT--RIALQR-S-GKDFTIMKV-LPSGVYQYRFLVDG  147 (210)
Q Consensus        95 v~F~-w~~~g~~V~V~GSFdnW~~--~ipM~r-s-~~~f~i~l~-Lp~G~YqYKFiVDG  147 (210)
                      |.|+ |.+.+++|.|.---.++..  ..+|.+ . .+.|++.+. +.+|.+ |+|.|++
T Consensus        19 ~~F~lwAP~A~~V~L~l~~~~~~~~~~~~~~~~~~~GvW~~~i~~~~~G~~-Y~y~v~~   76 (115)
T d2fhfa1          19 VTFRVWAPTAQQVELVIYSADKKVIASHPMTRDSASGAWSWQGGSDLKGAF-YRYAMTV   76 (115)
T ss_dssp             EEEEEECTTCSEEEEEEECTTCCEEEEEECEECTTTCEEEEEECGGGTTCE-EEEEEEE
T ss_pred             EEEEEECCCCCEEEEEEECCCCCccceeeeeEcCCCCEEEEEECCCCCCCE-EEEEEEc
Confidence            6784 8999999999743333332  223433 3 368999875 677864 7777764

>d1bf2a1 b.1.18.2 (A:1-162) Isoamylase, N-terminal domain N {Pseudomonas amyloderamosa [TaxId: 32043]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: E set domains
family: E-set domains of sugar-utilizing enzymes
domain: Isoamylase, N-terminal domain N
species: Pseudomonas amyloderamosa [TaxId: 32043]

Probab=95.80  E-value=0.015  Score=44.51  Aligned_cols=59  Identities=10%  Similarity=0.111  Sum_probs=43.9

Q ss_pred             CceeEEE-EEcCCCCeEEEEeecCCCcc----ceeeeee-CCcEEEEEE--------cCCceEEEEEEEcCeee
Q 028378           91 VGIPTMI-TWSHDGCEVAVEGSWDNWKT----RIALQRS-GKDFTIMKV--------LPSGVYQYRFLVDGLWK  150 (210)
Q Consensus        91 ~~vpv~F-~w~~~g~~V~V~GSFdnW~~----~ipM~rs-~~~f~i~l~--------Lp~G~YqYKFiVDG~W~  150 (210)
                      .+.-|+| .|++.+++|.|.--.+++..    +++|.+. ++.|.+.+.        +.+|.+ |.|.|||.|.
T Consensus        14 ~g~~v~F~vwAp~A~~V~L~ly~~~~~~~~~~~~~l~~~~~gvW~~~v~~~~~~~~g~~~G~~-Y~yrv~Gp~~   86 (162)
T d1bf2a1          14 QQANITFRVYSSQATRIVLYLYSAGYGVQESATYTLSPAGSGVWAVTVPVSSIKAAGITGAVY-YGYRAWGPNW   86 (162)
T ss_dssp             TSSEEEEEEECSSCSEEEEEEESSSSSCCCSEEEECEECSTTEEEEEEEHHHHHHTTCCSCCE-EEEEEEBTTB
T ss_pred             CCeeEEEEEECCCCCEEEEEEEcCCCCCcceeEEEcccccccEEEEEecccccccccCCCCcE-EEEEEccccC
Confidence            3456789 59999999999986666643    3678764 568999885        667754 8888998753

>d3c8da1 b.1.18.20 (A:6-150) Enterochelin esterase {Shigella flexneri 2a str. 2457T [TaxId: 198215]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: E set domains
family: Enterochelin esterase N-terminal domain-like
domain: Enterochelin esterase
species: Shigella flexneri 2a str. 2457T [TaxId: 198215]

Probab=91.96  E-value=0.44  Score=36.28  Aligned_cols=83  Identities=16%  Similarity=0.106  Sum_probs=56.7

Q ss_pred             CceeEEEEEcCC--------CCeEEEEeecCCCc----cceeeeeeCC--cEEEEEEcCCc-eEEEEEEE-c--------
Q 028378           91 VGIPTMITWSHD--------GCEVAVEGSWDNWK----TRIALQRSGK--DFTIMKVLPSG-VYQYRFLV-D--------  146 (210)
Q Consensus        91 ~~vpv~F~w~~~--------g~~V~V~GSFdnW~----~~ipM~rs~~--~f~i~l~Lp~G-~YqYKFiV-D--------  146 (210)
                      ..+.|||-|...        .+.|+|.+.---.+    ....|+|-++  .|..++.||.. +-.|+|+. .        
T Consensus        21 ~~~~VTFlWR~~~~~~~~sa~~~Vyl~~n~vtDh~~~~~~~~m~rl~gTDVW~~s~~vpad~rgsY~fip~~~~~~~~~~  100 (145)
T d3c8da1          21 EMFEVTFWWRDPQGSEEYSTIKRVWVYITGVTDHHQNSQPQSMQRIAGTDVWQWTTQLNANWRGSYCFIPTERDDIFSAP  100 (145)
T ss_dssp             SEEEEEEEEECTTCSTTTCCCCEEEEEETTTC-------CCBCEECTTSSEEEEEEEEETTCEEEEEEEEESCCSTTCCC
T ss_pred             CCEEEEEEEcCccccccccccceEEEecccccccccccChhhhhcCCCCCeEEEEEEECcccEEEEEEEecCcccCCCcC
Confidence            457899999852        34699977654333    2245999764  69999999987 88999984 1        


Q ss_pred             -C------e-e-------ecCCCCCe-eeCCCCCeeEEEEcCC
Q 028378          147 -G------L-W-------KYAPDLPS-TQDDDGNVYNILDLQV  173 (210)
Q Consensus       147 -G------~-W-------~~Dp~~P~-~~D~~G~~NNvI~V~d  173 (210)
                       +      + |       +.||-||+ ....-|+..++|++.+
T Consensus       101 ~~~~~~~R~~wr~l~~~a~~DPlNp~~~~~~~g~~~S~l~lp~  143 (145)
T d3c8da1         101 SPDRLELREGWRKLLPQAIADPLNPQSWKGGLGHAVSALEMPQ  143 (145)
T ss_dssp             --CHHHHHHHHHHHGGGCBCCTTCSSEECCSSSSCEEEEECTT
T ss_pred             CccHHHHHHHHHHhhhcccCCCCCCCCCcCCCCCcccccccCC
Confidence             1      1 1       56898884 3456677778887754

>d1wzla1 b.1.18.2 (A:1-120) Maltogenic amylase, N-terminal domain N {Thermoactinomyces vulgaris, TVAII [TaxId: 2026]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: E set domains
family: E-set domains of sugar-utilizing enzymes
domain: Maltogenic amylase, N-terminal domain N
species: Thermoactinomyces vulgaris, TVAII [TaxId: 2026]

Probab=83.24  E-value=2.2  Score=30.63  Aligned_cols=56  Identities=13%  Similarity=0.112  Sum_probs=38.4

Q ss_pred             CCceeEEEEEc-CCCCeEEEE-ee---cCCCcc-ceeeeeeC--C---cEEEEEEcCCceEEEEEEE
Q 028378           90 GVGIPTMITWS-HDGCEVAVE-GS---WDNWKT-RIALQRSG--K---DFTIMKVLPSGVYQYRFLV  145 (210)
Q Consensus        90 ~~~vpv~F~w~-~~g~~V~V~-GS---FdnW~~-~ipM~rs~--~---~f~i~l~Lp~G~YqYKFiV  145 (210)
                      +..+.++|+=. ...++|.|. |+   |+.+.. .++|+|..  +   .|.+++.++..+.+|.|.|
T Consensus        20 ~~~l~IRLRT~k~dv~~V~l~~gDpy~~~~~~~~~~~M~k~~s~~~fDywe~~i~~~~~r~~Y~F~l   86 (120)
T d1wzla1          20 ETQLRVRLRAKKGDVVRCEVLYADRYASPEEELAHALAGKAGSDERFDYFEALLECSTKRVKYVFLL   86 (120)
T ss_dssp             TTEEEEEEEEETTTCSEEEEEEECTTCCTTSCCEEEECEEEEECSSEEEEEEEEECTTSCEEEEEEE
T ss_pred             CCEEEEEEEeccCCccEEEEEEcCCccCCCCCEEEEEEEEeccCCCeeEEEEEEECCCCeEEEEEEE
Confidence            34566666543 467888876 55   443322 37898743  3   5899999999999999988

>d1ji1a1 b.1.18.2 (A:1-122) Maltogenic amylase, N-terminal domain N {Thermoactinomyces vulgaris, TVAI [TaxId: 2026]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: E set domains
family: E-set domains of sugar-utilizing enzymes
domain: Maltogenic amylase, N-terminal domain N
species: Thermoactinomyces vulgaris, TVAI [TaxId: 2026]

Probab=80.29  E-value=6  Score=27.94  Aligned_cols=55  Identities=7%  Similarity=0.004  Sum_probs=36.6

Q ss_pred             CceeEEEEEc-CCCCeEEEE-eecCCCcc-ceeeeee--C--C---cEEEEEEcCCceEEEEEEE
Q 028378           91 VGIPTMITWS-HDGCEVAVE-GSWDNWKT-RIALQRS--G--K---DFTIMKVLPSGVYQYRFLV  145 (210)
Q Consensus        91 ~~vpv~F~w~-~~g~~V~V~-GSFdnW~~-~ipM~rs--~--~---~f~i~l~Lp~G~YqYKFiV  145 (210)
                      ..+.++|+=. ...++|.|. ++=-.|.. ..+|.+.  .  +   .|+++|.++.++.+|+|+|
T Consensus        30 ~~v~IRLRt~~~dv~~V~l~~~d~~~~~~~~~~m~~~~~~~~~~fdywea~i~~~~~~~~Y~F~l   94 (122)
T d1ji1a1          30 QSVTLKLRTFKGDITSANIKYWDTADNAFHWVPMVWDSNDPTGTFDYWKGTIPASPSIKYYRFQI   94 (122)
T ss_dssp             CCEEEEEEEETTCCSEEEEEEEETTTTEEEEEECEEEEECTTSSEEEEEEEECCCSSCEEEEEEE
T ss_pred             CEEEEEEEcccCCccEEEEEEecCCCCceeeEEEEEEeccCCCcEEEEEEEEEcCCCeEEEEEEE
Confidence            3455555533 467899887 34345653 3466653  2  2   4789999999999999998

>d1j0ha1 b.1.18.2 (A:1-123) Neopullulanase, N-terminal domain {Bacillus stearothermophilus [TaxId: 1422]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: E set domains
family: E-set domains of sugar-utilizing enzymes
domain: Neopullulanase, N-terminal domain
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=80.02  E-value=2.7  Score=30.12  Aligned_cols=56  Identities=14%  Similarity=0.320  Sum_probs=38.3

Q ss_pred             CCceeEEEEEc-CCCCeEEEE-ee---cC--CCcc-ceeeeee--CC---cEEEEEEcCCceEEEEEEE
Q 028378           90 GVGIPTMITWS-HDGCEVAVE-GS---WD--NWKT-RIALQRS--GK---DFTIMKVLPSGVYQYRFLV  145 (210)
Q Consensus        90 ~~~vpv~F~w~-~~g~~V~V~-GS---Fd--nW~~-~ipM~rs--~~---~f~i~l~Lp~G~YqYKFiV  145 (210)
                      +..+.++|+=. ...++|.|. |+   |+  .|.. .++|++.  .+   .|.+++.++..+.+|+|+|
T Consensus        20 ~~~v~IRLRt~k~dv~~V~l~~gD~y~~~~~~~~~~~~~M~k~~s~~~fDywe~~i~~~~~r~~Y~F~l   88 (123)
T d1j0ha1          20 SETLHLRLRTKKDDIDRVELLHGDPYDWQNGAWQFQMMPMRKTGSDELFDYWFAEVKPPYRRLRYGFVL   88 (123)
T ss_dssp             SSCEEEEEEEETTTCSEEEEEEECTTCEETTEECCEEEECEEEEECSSEEEEEEEECCTTSCEEEEEEE
T ss_pred             CCEEEEEEEecCCCccEEEEEEcCcccccCCcCceEEEEEEEeecCCceEEEEEEEECCCCeEEEEEEE
Confidence            44566666554 457888875 54   22  2443 3689874  23   4899999999999999998