Citrus Sinensis ID: 028389

---

Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------21
Protein Sequence
MADPNGHSWRDGMSSDNIKGLILALSSSIFIGSSFIVKKKGLKKAGASGVRAGFGGYSYLYEPLWWVGMITMVVGEIANFAAYAFAPAILVTPLGALSIIISAALAHIILRERLHIFGILGCILCVVGSTTIVLHAPAEREIESVIEVWNLATEPALVITAVFILIFHYIPQYGQTHIMVYIGVCSLVGSLSVCILHTGTGNFVIAIVF
Secondary Structure (PSIPRED)
cccccccccccccccccHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHcccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHcccccccEEEEEEEEEccEEEEEEcccccccccHHHHHHHHccHHHHHHHHHHHHHHcccccccEEEEEEEEEHHHcccEEEEHHHHHHHHHHHHHHc
Secondary Structure Prediction (SSPRO)
ccccccccHHcccccccEEEEEEEHHHHHHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHccEEEEEEEEccEEEEEEcccccccccHHHHHHHHHcHHHHHHHHHHHHHHHccccccccEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHc
Coil and Loop (DISEMBL)
madpnghswrdgmssdNIKGLILALSSSIFIGSSFIVKKKglkkagasgvragfggysylyepLWWVGMITMVVGEIANFAAYAFAPAILVTPLGALSIIISAALAHIILRERLHIFGILGCILCVVGSttivlhapaerEIESVIEVWNLATEPALVITAVFILIFHYIPQYGQTHIMVYIGVCSLVGSLSVCILHTGTGNFVIAIVF
Flexible Loop (DISEMBL)
madpnghswrdgMSSDNIKGLILALSSSIFIGSSFIVKKKGLKKAGASGVRAGFGGYSYLYEPLWWVGMITMVVGEIANFAAYAFAPAILVTPLGALSIIISAALAHIILRERLHIFGILGCILCVVGSTTIVLHAPAEREIESVIEVWNLATEPALVITAVFILIFHYIPQYGQTHIMVYIGVCSLVGSLSVCILHTGTGNFVIAIVF
Low Complexity Region (SEG)
MADPNGHSWRDGMSSDNIKglilalsssifigssfiVkkkglkkagaSGVRAGFGGYSYLYEPLWWVGMITMVVGEIanfaayafapaILVTPlgalsiiisaalahiilRERLHIFGILGCILCVVGSTTIVLHAPAEREIESVIEVWNLATEPALVITAVFILIFHYIPQYGQTHIMVYIGVCSLVGSLSVCILHTGTGNFVIAIVF
Disordered region (IsUnstruct)
*****************IKGLILALSSSIFIGSSFIVKKKGLKKAGASGVRAGFGGYSYLYEPLWWVGMITMVVGEIANFAAYAFAPAILVTPLGALSIIISAALAHIILRERLHIFGILGCILCVVGSTTIVLHAPAEREIESVIEVWNLATEPALVITAVFILIFHYIPQYGQTHIMVYIGVCSLVGSLSVCILHTGTGNFVIAIV*
Disordered Region (DISOPRED)
***************DNIKGLILALSSSIFIGSSFIVKKKGLK*A********FGGYSYLYEPLWWVGMITMVVGEIANFAAYAFAPAILVTPLGALSIIISAALAHIILRERLHIFGILGCILCVVGSTTIVLHAPAEREIESVIEVWNLATEPALVITAVFILIFHYIPQYGQTHIMVYIGVCSLVGSLSVCILHTGTGNFVIAIVF
Disordered Region (DISEMBL)
**********DGMSSDNIKGLILALSSSIFIGSSFIVKK********SGVRAGFGGYSYLYEPLWWVGMITMVVGEIANFAAYAFAPAILVTPLGALSIIISAALAHIILRERLHIFGILGCILCVVGSTTIVLHAPAEREIESVIEVWNLATEPALVITAVFILIFHYIPQYGQTHIMVYIGVCSLVGSLSVCILHTGTGNFVIAIVF
Disordered Region (DISPRO)
************MSSDNIKGLILALSSSIFIGSSFIVKKKGLKKAGASGVRAGFGGYSYLYEPLWWVGMITMVVGEIANFAAYAFAPAILVTPLGALSIIISAALAHIILRERLHIFGILGCILCVVGSTTIVLHAPAEREIESVIEVWNLATEPALVITAVFILIFHYIPQYGQTHIMVYIGVCSLVGSLSVCILHTGTGNFVIAIVF
Transmembrane Helix (TMHMM)
oooooooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiHHHHHHHHHHHHHHHHHHHooooooooooooo
Transmembrane Helix (MEMSAT)
ooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooHHHHHHHHHHHHHHHHHHHHiiiiiiiHHHHHHHHHHHHHHHHHHHoooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHoooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooooooooooooooHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHoooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiHHHHHHHHHHHHHHHHooooooooooooooooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHHoooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MADPNGHSWRDGMSSDNIKGLILALSSSIFIGSSFIVKKKGLKKAGASGVRAGFGGYSYLYEPLWWVGMITMVVGEIANFAAYAFAPAILVTPLGALSIIISAALAHIILRERLHIFGILGCILCVVGSTTIVLHAPAEREIESVIEVWNLATEPALVITAVFILIFHYIPQYGQTHIMVYIGVCSLVGSLSVCILHTGTGNFVIAIVF
Positional Conservation
no confident homologs detected

---

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	209	2.2.26 [Sep-21-2011]
Q9JJC8	359	Magnesium transporter NIP	yes	no	0.832	0.484	0.535	2e-47
Q5R7Q3	360	Magnesium transporter NIP	yes	no	0.832	0.483	0.541	3e-47
Q8N8Q9	360	Magnesium transporter NIP	yes	no	0.832	0.483	0.541	3e-47
Q3SWX0	360	Magnesium transporter NIP	yes	no	0.832	0.483	0.541	4e-47
Q0D2K0	466	Magnesium transporter NIP	no	no	0.894	0.401	0.474	7e-44
Q8BZF2	406	Magnesium transporter NIP	no	no	0.832	0.428	0.491	7e-42
Q8BMW7	416	Magnesium transporter NIP	no	no	0.832	0.418	0.569	7e-40
Q5RDB8	410	Magnesium transporter NIP	no	no	0.832	0.424	0.563	4e-33
Q6NVV3	410	Magnesium transporter NIP	no	no	0.832	0.424	0.563	1e-32
Q7RTP0	329	Magnesium transporter NIP	no	no	0.799	0.507	0.416	4e-31

>sp|Q9JJC8|NIPA2_MOUSE Magnesium transporter NIPA2 OS=Mus musculus GN=Nipa2 PE=1 SV=1

 Score =  188 bits (478), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 97/181 (53%), Positives = 137/181 (75%), Gaps = 7/181 (3%)

Query: 20  GLILALSSSIFIGSSFIVKKKGLKKAGASG-VRAGFGGYSYLYEPLWWVGMITMVVGEIA 78
           GL LA++SSIFIG SFI+KKKGL +    G +RAG GG++YL E LWW G+++M  GE+A
Sbjct: 13  GLGLAMTSSIFIGGSFILKKKGLLRLARKGSMRAGQGGHAYLKEWLWWAGLLSMGAGEVA 72

Query: 79  NFAAYAFAPAILVTPLGALSIIISAALAHIILRERLHIFGILGCILCVVGSTTIVLHAPA 138
           NFAAYAFAPA LVTPLGALS+++SA L+   L ERL++ G +GC+L ++GST +V+HAP 
Sbjct: 73  NFAAYAFAPATLVTPLGALSVLVSAILSSYFLNERLNLHGKIGCLLSILGSTVMVIHAPK 132

Query: 139 EREIESVIEVWNLATEPALVITAVFI----LIFHYI--PQYGQTHIMVYIGVCSLVGSLS 192
           E EIE++ E+ +   +P  V+ A F+    LIF ++  P++GQT+I+VYI +CS++G+ S
Sbjct: 133 EEEIETLNEMSHKLGDPGFVVFATFVVIVALIFIFVVGPRHGQTNILVYITICSVIGAFS 192

Query: 193 V 193
           V
Sbjct: 193 V 193

Acts as a selective Mg(2+) transporter.
Mus musculus (taxid: 10090)

>sp|Q5R7Q3|NIPA2_PONAB Magnesium transporter NIPA2 OS=Pongo abelii GN=NIPA2 PE=2 SV=1

 Score =  188 bits (477), Expect = 3e-47,   Method: Compositional matrix adjust.
 Identities = 98/181 (54%), Positives = 134/181 (74%), Gaps = 7/181 (3%)

Query: 20  GLILALSSSIFIGSSFIVKKKGLKKAGASG-VRAGFGGYSYLYEPLWWVGMITMVVGEIA 78
           GL LA+SSSIFIG SFI+KKKGL +    G +RAG GG++YL E LWW G+++M  GE+A
Sbjct: 13  GLGLAMSSSIFIGGSFILKKKGLLRLARKGSMRAGQGGHAYLKEWLWWAGLLSMGAGEVA 72

Query: 79  NFAAYAFAPAILVTPLGALSIIISAALAHIILRERLHIFGILGCILCVVGSTTIVLHAPA 138
           NFAAYAFAPA LVTPLGALS+++SA L+   L ERL++ G +GC+L ++GST +V+HAP 
Sbjct: 73  NFAAYAFAPATLVTPLGALSVLVSAILSSYFLNERLNLHGKIGCLLSILGSTVMVIHAPK 132

Query: 139 EREIESVIEVWNLATEPALVITAV------FILIFHYIPQYGQTHIMVYIGVCSLVGSLS 192
           E EIE++ E+ +   +P  V+ A        ILIF   P++GQT+I+VYI +CS++G+ S
Sbjct: 133 EEEIETLNEMSHKLGDPGFVVFATLVVIVALILIFVVGPRHGQTNILVYITICSVIGAFS 192

Query: 193 V 193
           V
Sbjct: 193 V 193

Acts as a selective Mg(2+) transporter.

Pongo abelii (taxid: 9601)

>sp|Q8N8Q9|NIPA2_HUMAN Magnesium transporter NIPA2 OS=Homo sapiens GN=NIPA2 PE=2 SV=1

 Score =  188 bits (477), Expect = 3e-47,   Method: Compositional matrix adjust.
 Identities = 98/181 (54%), Positives = 134/181 (74%), Gaps = 7/181 (3%)

Query: 20  GLILALSSSIFIGSSFIVKKKGLKKAGASG-VRAGFGGYSYLYEPLWWVGMITMVVGEIA 78
           GL LA+SSSIFIG SFI+KKKGL +    G +RAG GG++YL E LWW G+++M  GE+A
Sbjct: 13  GLGLAMSSSIFIGGSFILKKKGLLRLARKGSMRAGQGGHAYLKEWLWWAGLLSMGAGEVA 72

Query: 79  NFAAYAFAPAILVTPLGALSIIISAALAHIILRERLHIFGILGCILCVVGSTTIVLHAPA 138
           NFAAYAFAPA LVTPLGALS+++SA L+   L ERL++ G +GC+L ++GST +V+HAP 
Sbjct: 73  NFAAYAFAPATLVTPLGALSVLVSAILSSYFLNERLNLHGKIGCLLSILGSTVMVIHAPK 132

Query: 139 EREIESVIEVWNLATEPALVITAV------FILIFHYIPQYGQTHIMVYIGVCSLVGSLS 192
           E EIE++ E+ +   +P  V+ A        ILIF   P++GQT+I+VYI +CS++G+ S
Sbjct: 133 EEEIETLNEMSHKLGDPGFVVFATLVVIVALILIFVVGPRHGQTNILVYITICSVIGAFS 192

Query: 193 V 193
           V
Sbjct: 193 V 193

Acts as a selective Mg(2+) transporter.

Homo sapiens (taxid: 9606)

>sp|Q3SWX0|NIPA2_BOVIN Magnesium transporter NIPA2 OS=Bos taurus GN=NIPA2 PE=2 SV=1

 Score =  187 bits (476), Expect = 4e-47,   Method: Compositional matrix adjust.
 Identities = 98/181 (54%), Positives = 134/181 (74%), Gaps = 7/181 (3%)

Query: 20  GLILALSSSIFIGSSFIVKKKGLKKAGASG-VRAGFGGYSYLYEPLWWVGMITMVVGEIA 78
           GL LA+SSSIFIG SFI+KKKGL +    G  RAG GG++YL E LWW G+++M  GE+A
Sbjct: 13  GLGLAMSSSIFIGGSFILKKKGLLRLARKGSTRAGQGGHAYLKEWLWWAGLLSMGAGEVA 72

Query: 79  NFAAYAFAPAILVTPLGALSIIISAALAHIILRERLHIFGILGCILCVVGSTTIVLHAPA 138
           NFAAYAFAPA LVTPLGALS+++SA L+   L ERL++ G +GC+L ++GST +V+HAP 
Sbjct: 73  NFAAYAFAPATLVTPLGALSVLVSAILSSYFLNERLNLHGKIGCLLSILGSTVMVIHAPK 132

Query: 139 EREIESVIEVWNLATEPALVITAV------FILIFHYIPQYGQTHIMVYIGVCSLVGSLS 192
           E EIE++ E+ +   +P  V+ A        ILIF   P++GQT+I+VYI +CS++G++S
Sbjct: 133 EEEIETLNEMSHKLGDPGFVVFATLVVIVSLILIFVVGPRHGQTNILVYITICSVIGAVS 192

Query: 193 V 193
           V
Sbjct: 193 V 193

Acts as a selective Mg(2+) transporter.

Bos taurus (taxid: 9913)

>sp|Q0D2K0|NIPA4_HUMAN Magnesium transporter NIPA4 OS=Homo sapiens GN=NIPAL4 PE=1 SV=3

 Score =  176 bits (447), Expect = 7e-44,   Method: Compositional matrix adjust.
 Identities = 93/196 (47%), Positives = 133/196 (67%), Gaps = 9/196 (4%)

Query: 7   HSWRDGMSSDN--IKGLILALSSSIFIGSSFIVKKKGLKKAGASG-VRAGFGGYSYLYEP 63
           HSW++ +  +     GL LA  SS  IGSS I+KKKGL +  A+G  RA  GG+ YL + 
Sbjct: 106 HSWQERIRQNYGFYIGLGLAFLSSFLIGSSVILKKKGLLRLVATGATRAVDGGFGYLKDA 165

Query: 64  LWWVGMITMVVGEIANFAAYAFAPAILVTPLGALSIIISAALAHIILRERLHIFGILGCI 123
           +WW G +TM  GE+ANF AYAFAPA +VTPLGALS++ISA L+   LRE L++ G LGC+
Sbjct: 166 MWWAGFLTMAAGEVANFGAYAFAPATVVTPLGALSVLISAILSSYFLRESLNLLGKLGCV 225

Query: 124 LCVVGSTTIVLHAPAEREIESVIEVWNLATEPALVITAV------FILIFHYIPQYGQTH 177
           +CV GST +V+HAP E ++ +++E+ +   +   ++ AV       ILIF   P+YGQ +
Sbjct: 226 ICVAGSTVMVIHAPEEEKVTTIMEMASKMKDTGFIVFAVLLLVSCLILIFVIAPRYGQRN 285

Query: 178 IMVYIGVCSLVGSLSV 193
           I++YI +CS++G+ SV
Sbjct: 286 ILIYIIICSVIGAFSV 301

Acts as a Mg(2+) transporter. Can also transport other divalent cations such as Ba(2+), Mn(2+), Sr(2+) and Co(2+) but to a much less extent than Mg(2+) (By similarity). May be a receptor for ligands (trioxilins A3 and B3) from the hepoxilin pathway.

Homo sapiens (taxid: 9606)

>sp|Q8BZF2|NIPA4_MOUSE Magnesium transporter NIPA4 OS=Mus musculus GN=Nipal4 PE=1 SV=1

 Score =  170 bits (430), Expect = 7e-42,   Method: Compositional matrix adjust.
 Identities = 89/181 (49%), Positives = 123/181 (67%), Gaps = 7/181 (3%)

Query: 20  GLILALSSSIFIGSSFIVKKKGLKKAGASG-VRAGFGGYSYLYEPLWWVGMITMVVGEIA 78
           G+ LA  S   IG+S I+KKKGL +  A+G  RA  GGY YL +P+WW GM TM  GE+A
Sbjct: 61  GVGLAFLSCFLIGTSVILKKKGLIRLVATGATRAVNGGYGYLKDPMWWAGMATMSAGEVA 120

Query: 79  NFAAYAFAPAILVTPLGALSIIISAALAHIILRERLHIFGILGCILCVVGSTTIVLHAPA 138
           NF AYAFAPA +VTPLGALS++ISA  +   L E L++ G LGC++C+ GST +V+HAP 
Sbjct: 121 NFGAYAFAPATVVTPLGALSVLISAIFSSYCLGESLNLLGKLGCVICMAGSTVMVIHAPK 180

Query: 139 EREIESVIEVWNLATEPALVITAV------FILIFHYIPQYGQTHIMVYIGVCSLVGSLS 192
           E ++ +V E+ +   +   ++ AV       ILIF   P+YGQ +I++YI +CS++GS S
Sbjct: 181 EEKVTTVAEMASKMKDTGFIVFAVLLVVSCLILIFIVAPRYGQRNILIYIIICSVIGSFS 240

Query: 193 V 193
           V
Sbjct: 241 V 241

Acts as a Mg(2+) transporter. Can also transport other divalent cations such as Ba(2+), Mn(2+), Sr(2+) and Co(2+) but to a much less extent than Mg(2+). May be a receptor for ligands (trioxilins A3 and B3) from the hepoxilin pathway.

Mus musculus (taxid: 10090)

>sp|Q8BMW7|NIPA3_MOUSE Magnesium transporter NIPA3 OS=Mus musculus GN=Nipal1 PE=1 SV=2

 Score =  163 bits (413), Expect = 7e-40,   Method: Compositional matrix adjust.
 Identities = 103/181 (56%), Positives = 131/181 (72%), Gaps = 7/181 (3%)

Query: 20  GLILALSSSIFIGSSFIVKKKGLKKAGASGV-RAGFGGYSYLYEPLWWVGMITMVVGEIA 78
           GL+LA+SSS+FIGSSFI+KKKGL +    G+ RAG GG+SYL E LWW G+++M  GE A
Sbjct: 71  GLVLAISSSVFIGSSFILKKKGLLQLADKGITRAGQGGHSYLKEWLWWAGLLSMGAGEAA 130

Query: 79  NFAAYAFAPAILVTPLGALSIIISAALAHIILRERLHIFGILGCILCVVGSTTIVLHAPA 138
           NFAAYAFAPA LVTPLGALS++ISA L+   L ERL+I G +GCIL V+GST +V+HAP 
Sbjct: 131 NFAAYAFAPATLVTPLGALSVLISAILSSYFLNERLNIHGKIGCILSVLGSTVMVIHAPQ 190

Query: 139 EREIESVIEVWNLATEPALVITAVFI------LIFHYIPQYGQTHIMVYIGVCSLVGSLS 192
           E E+ S+ E+     +P  V  AV I      LI    P+ GQT+I+VYI +CSL+G+ S
Sbjct: 191 EGEVTSLHEMEMKLRDPGFVSFAVIISVISLVLILIVAPKKGQTNILVYIAICSLIGAFS 250

Query: 193 V 193
           V
Sbjct: 251 V 251

Acts as a Mg(2+) transporter. Can also transport other divalent cations such as Fe(2+), Sr(2+), Ba(2+), Mn(2+), Cu(2+) and Co(2+) but to a much less extent than Mg(2+).

Mus musculus (taxid: 10090)

>sp|Q5RDB8|NIPA3_PONAB Magnesium transporter NIPA3 OS=Pongo abelii GN=NIPAL1 PE=2 SV=1

 Score =  141 bits (355), Expect = 4e-33,   Method: Compositional matrix adjust.
 Identities = 102/181 (56%), Positives = 133/181 (73%), Gaps = 7/181 (3%)

Query: 20  GLILALSSSIFIGSSFIVKKKGLKKAGASGV-RAGFGGYSYLYEPLWWVGMITMVVGEIA 78
           GL+LA+SSSIFIGSSFI+KKKGL +  + G+ RAG GG+SYL E LWWVG+++M VGE A
Sbjct: 71  GLVLAVSSSIFIGSSFILKKKGLLQLASKGITRAGQGGHSYLKEWLWWVGLLSMGVGEAA 130

Query: 79  NFAAYAFAPAILVTPLGALSIIISAALAHIILRERLHIFGILGCILCVVGSTTIVLHAPA 138
           NFAAYAFAPA LVTPLGALS++ISA L+   L E L+I G +GCIL ++GST +V+HAP 
Sbjct: 131 NFAAYAFAPATLVTPLGALSVLISAILSSYFLNEHLNIHGKIGCILSILGSTVMVIHAPQ 190

Query: 139 EREIESVIEVWNLATEPALVITAV------FILIFHYIPQYGQTHIMVYIGVCSLVGSLS 192
           E E+ S+ E+     +P  +  AV       +LI    P+ GQT+I+VYI +CSL+G+ S
Sbjct: 191 EEEVTSLHEMEMKLRDPGFISFAVIVTVISLVLILIVAPKKGQTNILVYISICSLIGAFS 250

Query: 193 V 193
           V
Sbjct: 251 V 251

Acts as a Mg(2+) transporter. Can also transport other divalent cations such as Fe(2+), Sr(2+), Ba(2+), Mn(2+), Cu(2+) and Co(2+) but to a much less extent than Mg(2+).

Pongo abelii (taxid: 9601)

>sp|Q6NVV3|NIPA3_HUMAN Magnesium transporter NIPA3 OS=Homo sapiens GN=NIPAL1 PE=2 SV=1

 Score =  139 bits (350), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 102/181 (56%), Positives = 134/181 (74%), Gaps = 7/181 (3%)

Query: 20  GLILALSSSIFIGSSFIVKKKGLKKAGASG-VRAGFGGYSYLYEPLWWVGMITMVVGEIA 78
           GL+LA+SSSIFIGSSFI+KKKGL +  + G  RAG GG+SYL E LWWVG+++M  GE A
Sbjct: 71  GLVLAVSSSIFIGSSFILKKKGLLQLASKGFTRAGQGGHSYLKEWLWWVGLLSMGAGEAA 130

Query: 79  NFAAYAFAPAILVTPLGALSIIISAALAHIILRERLHIFGILGCILCVVGSTTIVLHAPA 138
           NFAAYAFAPA LVTPLGALS++ISA L+   L E L+I G +GCIL ++GST +V+HAP 
Sbjct: 131 NFAAYAFAPATLVTPLGALSVLISAILSSYFLNEHLNIHGKIGCILSILGSTVMVIHAPQ 190

Query: 139 EREIESVIEVWNLATEP-----ALVITAV-FILIFHYIPQYGQTHIMVYIGVCSLVGSLS 192
           E E+ S+ E+     +P     A++IT +  +LI    P+ GQT+I+VYI +CSL+G+ S
Sbjct: 191 EEEVTSLHEMEMKLRDPGFISFAVIITVISLVLILIVAPKKGQTNILVYISICSLIGAFS 250

Query: 193 V 193
           V
Sbjct: 251 V 251

Acts as a Mg(2+) transporter. Can also transport other divalent cations such as Fe(2+), Sr(2+), Ba(2+), Mn(2+), Cu(2+) and Co(2+) but to a much less extent than Mg(2+).

Homo sapiens (taxid: 9606)

>sp|Q7RTP0|NIPA1_HUMAN Magnesium transporter NIPA1 OS=Homo sapiens GN=NIPA1 PE=1 SV=1

 Score =  134 bits (338), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 75/180 (41%), Positives = 110/180 (61%), Gaps = 13/180 (7%)

Query: 20  GLILALSSSIFIGSSFIVKKKGLKKAGASGVRAGFGGYSYLYEPLWWVGMITMVVGEIAN 79
           GL +A+ SS+  GS+F+++KKG+       VRA   G SYL + +WW G I M VG+I N
Sbjct: 31  GLGVAVVSSLVNGSTFVLQKKGI-------VRAKRRGTSYLTDIVWWAGTIAMAVGQIGN 83

Query: 80  FAAYAFAPAILVTPLGALSIIISAALAHIILRERLHIFGILGCILCVVGSTTIVLHAPAE 139
           F AY   P +LVTPLGAL +   + LA  +L+E+L+I G LGC+L   GS  +++H+P  
Sbjct: 84  FLAYTAVPTVLVTPLGALGVPFGSILASYLLKEKLNILGKLGCLLSCAGSVVLIIHSPKS 143

Query: 140 REIESVIEVWNLATEP------ALVITAVFILIFHYIPQYGQTHIMVYIGVCSLVGSLSV 193
             + +  E+    T P       +V+  + +LIF   P +G T+IMVYI +CSL+GS +V
Sbjct: 144 ESVTTQAELEEKLTNPVFVGYLCIVLLMLLLLIFWIAPAHGPTNIMVYISICSLLGSFTV 203

Acts as a Mg(2+) transporter. Can also transport other divalent cations such as Fe(2+), Sr(2+), Ba(2+), Mn(2+) and Co(2+) but to a much less extent than Mg(2+).

Homo sapiens (taxid: 9606)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	209
449495529	346	PREDICTED: magnesium transporter NIPA2-l	0.923	0.557	0.869	7e-86
12324542	347	unknown protein; 34092-36071 [Arabidopsi	0.918	0.553	0.792	1e-84
18409942	343	uncharacterized protein [Arabidopsis tha	0.918	0.559	0.792	2e-84
388520797	349	unknown [Lotus japonicus]	0.904	0.541	0.866	5e-84
255576223	345	Non-imprinted in Prader-Willi/Angelman s	0.894	0.542	0.877	1e-83
449490126	330	PREDICTED: magnesium transporter NIPA2-l	0.866	0.548	0.844	3e-83
449441762	330	PREDICTED: magnesium transporter NIPA2-l	0.866	0.548	0.844	4e-83
357445355	203	Magnesium transporter NIPA2 [Medicago tr	0.937	0.965	0.846	4e-83
255647985	350	unknown [Glycine max]	0.885	0.528	0.884	5e-83
356543405	350	PREDICTED: magnesium transporter NIPA2-l	0.885	0.528	0.884	8e-83

>gi|449495529|ref|XP_004159868.1| PREDICTED: magnesium transporter NIPA2-like [Cucumis sativus]

 Score =  322 bits (824), Expect = 7e-86,   Method: Compositional matrix adjust.
 Identities = 173/199 (86%), Positives = 180/199 (90%), Gaps = 6/199 (3%)

Query: 1   MADPNGHSWRDGMSSDNIKGLILALSSSIFIGSSFIVKKKGLKKAGASGVRAGFGGYSYL 60
           MA     SWR+GMSSDNIKGLILALSSS FIG+SFIVKKKGLKKAGASGVRAG GGYSYL
Sbjct: 1   MATSQTPSWREGMSSDNIKGLILALSSSFFIGASFIVKKKGLKKAGASGVRAGVGGYSYL 60

Query: 61  YEPLWWVGMITMVVGEIANFAAYAFAPAILVTPLGALSIIISAALAHIILRERLHIFGIL 120
           YEPLWWVGMITM+VGEIANFAAYAFAPAILVTPLGALSIIISA LAHIILRERLHIFGIL
Sbjct: 61  YEPLWWVGMITMIVGEIANFAAYAFAPAILVTPLGALSIIISAVLAHIILRERLHIFGIL 120

Query: 121 GCILCVVGSTTIVLHAPAEREIESVIEVWNLATEPAL------VITAVFILIFHYIPQYG 174
           GC+LCVVGSTTIVLHAP EREIESV EVW +A EPA       V+TAVFILIFH+IPQYG
Sbjct: 121 GCVLCVVGSTTIVLHAPQEREIESVTEVWQMAMEPAFLLYAASVMTAVFILIFHFIPQYG 180

Query: 175 QTHIMVYIGVCSLVGSLSV 193
           QTHIMVYIGVCSLVGSLSV
Sbjct: 181 QTHIMVYIGVCSLVGSLSV 199

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|12324542|gb|AAG52228.1|AC021665_11 unknown protein; 34092-36071 [Arabidopsis thaliana]

 Score =  318 bits (815), Expect = 1e-84,   Method: Compositional matrix adjust.
 Identities = 160/202 (79%), Positives = 178/202 (88%), Gaps = 10/202 (4%)

Query: 1   MADPNGHSWRD---GMSSDNIKGLILALSSSIFIGSSFIVKKKGLKKAGASGVRAGFGGY 57
           MA+ +G SWRD   GMSSDNIKGL+LALSSS+FIG+SFIVKKKGLKKA ++G RAG GGY
Sbjct: 1   MAESSG-SWRDSYKGMSSDNIKGLVLALSSSLFIGASFIVKKKGLKKAASTGTRAGVGGY 59

Query: 58  SYLYEPLWWVGMITMVVGEIANFAAYAFAPAILVTPLGALSIIISAALAHIILRERLHIF 117
           SYLYEPLWW+GM TM++GEIANFAAYAFAPAILVTPLGA+SIIISA LAHIILRE+LHIF
Sbjct: 60  SYLYEPLWWIGMTTMLLGEIANFAAYAFAPAILVTPLGAVSIIISAVLAHIILREKLHIF 119

Query: 118 GILGCILCVVGSTTIVLHAPAEREIESVIEVWNLATEPA------LVITAVFILIFHYIP 171
           GILGC LCVVGSTTIVLHAP EREI+SVIEVWNLATEPA      LVI A   LI  ++P
Sbjct: 120 GILGCALCVVGSTTIVLHAPQEREIDSVIEVWNLATEPAFMFYASLVIGAAVFLIIRFVP 179

Query: 172 QYGQTHIMVYIGVCSLVGSLSV 193
           QYGQT++MVYIG+CSLVGSLSV
Sbjct: 180 QYGQTNVMVYIGICSLVGSLSV 201

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|18409942|ref|NP_565027.1| uncharacterized protein [Arabidopsis thaliana] gi|15028241|gb|AAK76709.1| unknown protein [Arabidopsis thaliana] gi|19310781|gb|AAL85121.1| unknown protein [Arabidopsis thaliana] gi|332197128|gb|AEE35249.1| uncharacterized protein [Arabidopsis thaliana]

 Score =  317 bits (813), Expect = 2e-84,   Method: Compositional matrix adjust.
 Identities = 160/202 (79%), Positives = 178/202 (88%), Gaps = 10/202 (4%)

Query: 1   MADPNGHSWRD---GMSSDNIKGLILALSSSIFIGSSFIVKKKGLKKAGASGVRAGFGGY 57
           MA+ +G SWRD   GMSSDNIKGL+LALSSS+FIG+SFIVKKKGLKKA ++G RAG GGY
Sbjct: 1   MAESSG-SWRDSYKGMSSDNIKGLVLALSSSLFIGASFIVKKKGLKKAASTGTRAGVGGY 59

Query: 58  SYLYEPLWWVGMITMVVGEIANFAAYAFAPAILVTPLGALSIIISAALAHIILRERLHIF 117
           SYLYEPLWW+GM TM++GEIANFAAYAFAPAILVTPLGA+SIIISA LAHIILRE+LHIF
Sbjct: 60  SYLYEPLWWIGMTTMLLGEIANFAAYAFAPAILVTPLGAVSIIISAVLAHIILREKLHIF 119

Query: 118 GILGCILCVVGSTTIVLHAPAEREIESVIEVWNLATEPA------LVITAVFILIFHYIP 171
           GILGC LCVVGSTTIVLHAP EREI+SVIEVWNLATEPA      LVI A   LI  ++P
Sbjct: 120 GILGCALCVVGSTTIVLHAPQEREIDSVIEVWNLATEPAFMFYASLVIGAAVFLIIRFVP 179

Query: 172 QYGQTHIMVYIGVCSLVGSLSV 193
           QYGQT++MVYIG+CSLVGSLSV
Sbjct: 180 QYGQTNVMVYIGICSLVGSLSV 201

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388520797|gb|AFK48460.1| unknown [Lotus japonicus]

 Score =  316 bits (809), Expect = 5e-84,   Method: Compositional matrix adjust.
 Identities = 169/195 (86%), Positives = 179/195 (91%), Gaps = 6/195 (3%)

Query: 5   NGHSWRDGMSSDNIKGLILALSSSIFIGSSFIVKKKGLKKAGASGVRAGFGGYSYLYEPL 64
           N  SWR+GMSSDNIKGL+LALSSS FIG+SFIVKKKGLKKAGASG+RAG GGYSYLYEPL
Sbjct: 6   NPSSWREGMSSDNIKGLVLALSSSFFIGASFIVKKKGLKKAGASGIRAGSGGYSYLYEPL 65

Query: 65  WWVGMITMVVGEIANFAAYAFAPAILVTPLGALSIIISAALAHIILRERLHIFGILGCIL 124
           WWVGMITM+VGEIANFAAYAFAPA+LVTPLGALSIIISAALAHIILRERLHIFG+LGC L
Sbjct: 66  WWVGMITMIVGEIANFAAYAFAPALLVTPLGALSIIISAALAHIILRERLHIFGVLGCAL 125

Query: 125 CVVGSTTIVLHAPAEREIESVIEVWNLATEP------ALVITAVFILIFHYIPQYGQTHI 178
           CVVGSTTIVLHAP EREIESV EVW+LA EP      ALVITA F+LIFH+IP YGQTHI
Sbjct: 126 CVVGSTTIVLHAPQEREIESVTEVWDLAMEPAFLFYAALVITAAFVLIFHFIPLYGQTHI 185

Query: 179 MVYIGVCSLVGSLSV 193
           MVYIGVCSLVGSLSV
Sbjct: 186 MVYIGVCSLVGSLSV 200

Source: Lotus japonicus

Species: Lotus japonicus

Genus: Lotus

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255576223|ref|XP_002529005.1| Non-imprinted in Prader-Willi/Angelman syndrome region protein, putative [Ricinus communis] gi|223531545|gb|EEF33375.1| Non-imprinted in Prader-Willi/Angelman syndrome region protein, putative [Ricinus communis]

 Score =  314 bits (805), Expect = 1e-83,   Method: Compositional matrix adjust.
 Identities = 172/196 (87%), Positives = 179/196 (91%), Gaps = 9/196 (4%)

Query: 7   HSWRD---GMSSDNIKGLILALSSSIFIGSSFIVKKKGLKKAGASGVRAGFGGYSYLYEP 63
            SWRD   GMSSDNIKGL+LALSSS FIG+SFIVKKKGLKKAGASG+RAG GGYSYLYEP
Sbjct: 4   QSWRDSYKGMSSDNIKGLVLALSSSFFIGASFIVKKKGLKKAGASGLRAGSGGYSYLYEP 63

Query: 64  LWWVGMITMVVGEIANFAAYAFAPAILVTPLGALSIIISAALAHIILRERLHIFGILGCI 123
           LWWVGMITM+VGEIANFAAYAFAPAILVTPLGALSIIISA LAHIIL E+LHIFGILGC+
Sbjct: 64  LWWVGMITMIVGEIANFAAYAFAPAILVTPLGALSIIISAVLAHIILNEKLHIFGILGCV 123

Query: 124 LCVVGSTTIVLHAPAEREIESVIEVWNLATEP------ALVITAVFILIFHYIPQYGQTH 177
           LCVVGSTTIVLHAP EREIESV EVW+LATEP      ALVITAVFILIFHYIP YGQTH
Sbjct: 124 LCVVGSTTIVLHAPQEREIESVKEVWDLATEPAFLFYAALVITAVFILIFHYIPDYGQTH 183

Query: 178 IMVYIGVCSLVGSLSV 193
           IMVYIGVCSLVGSLSV
Sbjct: 184 IMVYIGVCSLVGSLSV 199

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449490126|ref|XP_004158515.1| PREDICTED: magnesium transporter NIPA2-like [Cucumis sativus]

 Score =  313 bits (801), Expect = 3e-83,   Method: Compositional matrix adjust.
 Identities = 158/187 (84%), Positives = 171/187 (91%), Gaps = 6/187 (3%)

Query: 13  MSSDNIKGLILALSSSIFIGSSFIVKKKGLKKAGASGVRAGFGGYSYLYEPLWWVGMITM 72
           MSSDNIKGL+LALSSS FIG+SFIVKKKGLK AGASGVRAG GGYSYLYEPLWWVGMITM
Sbjct: 1   MSSDNIKGLVLALSSSFFIGASFIVKKKGLKIAGASGVRAGAGGYSYLYEPLWWVGMITM 60

Query: 73  VVGEIANFAAYAFAPAILVTPLGALSIIISAALAHIILRERLHIFGILGCILCVVGSTTI 132
           VVGEIANFAAYAFAPAILVTPLGALSIIISAALAHIILRERL+IFGILGC+LCVVGSTTI
Sbjct: 61  VVGEIANFAAYAFAPAILVTPLGALSIIISAALAHIILRERLNIFGILGCVLCVVGSTTI 120

Query: 133 VLHAPAEREIESVIEVWNLATEPALVITAVF------ILIFHYIPQYGQTHIMVYIGVCS 186
           VLHAP EREI SV EVW+LATEPA ++ A F      ILI H++P+YGQT++MVYIGVCS
Sbjct: 121 VLHAPQEREIVSVKEVWDLATEPAFLLYAAFMIATTLILIIHFVPRYGQTYVMVYIGVCS 180

Query: 187 LVGSLSV 193
           +VGSLSV
Sbjct: 181 IVGSLSV 187

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449441762|ref|XP_004138651.1| PREDICTED: magnesium transporter NIPA2-like [Cucumis sativus]

 Score =  312 bits (800), Expect = 4e-83,   Method: Compositional matrix adjust.
 Identities = 158/187 (84%), Positives = 171/187 (91%), Gaps = 6/187 (3%)

Query: 13  MSSDNIKGLILALSSSIFIGSSFIVKKKGLKKAGASGVRAGFGGYSYLYEPLWWVGMITM 72
           MSSDNIKGL+LALSSS FIG+SFIVKKKGLK AGASGVRAG GGYSYLYEPLWWVGMITM
Sbjct: 1   MSSDNIKGLVLALSSSFFIGASFIVKKKGLKIAGASGVRAGAGGYSYLYEPLWWVGMITM 60

Query: 73  VVGEIANFAAYAFAPAILVTPLGALSIIISAALAHIILRERLHIFGILGCILCVVGSTTI 132
           VVGEIANFAAYAFAPAILVTPLGALSIIISAALAHIILRERL+IFGILGC+LCVVGSTTI
Sbjct: 61  VVGEIANFAAYAFAPAILVTPLGALSIIISAALAHIILRERLNIFGILGCVLCVVGSTTI 120

Query: 133 VLHAPAEREIESVIEVWNLATEPALVITAVF------ILIFHYIPQYGQTHIMVYIGVCS 186
           VLHAP EREI SV EVW+LATEPA ++ A F      ILI H++P+YGQT++MVYIGVCS
Sbjct: 121 VLHAPQEREIVSVKEVWDLATEPAFLLYAAFMIATTLILIIHFVPRYGQTYVMVYIGVCS 180

Query: 187 LVGSLSV 193
           +VGSLSV
Sbjct: 181 IVGSLSV 187

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357445355|ref|XP_003592955.1| Magnesium transporter NIPA2 [Medicago truncatula] gi|355482003|gb|AES63206.1| Magnesium transporter NIPA2 [Medicago truncatula]

 Score =  312 bits (800), Expect = 4e-83,   Method: Compositional matrix adjust.
 Identities = 171/202 (84%), Positives = 184/202 (91%), Gaps = 6/202 (2%)

Query: 1   MADPNGHSWRDGMSSDNIKGLILALSSSIFIGSSFIVKKKGLKKAGASGVRAGFGGYSYL 60
           MA  +  SWR+GMSSDNIKGL+LALSSS FIG+SFIVKKKGLKKAGASG+RAG GGYSYL
Sbjct: 1   MASSSSSSWREGMSSDNIKGLVLALSSSFFIGASFIVKKKGLKKAGASGIRAGSGGYSYL 60

Query: 61  YEPLWWVGMITMVVGEIANFAAYAFAPAILVTPLGALSIIISAALAHIILRERLHIFGIL 120
           YEPLWWVGMITM+VGEIANFAAYAFAPAILVTPLGALSIIISAALAHIILRERLHIFG+L
Sbjct: 61  YEPLWWVGMITMIVGEIANFAAYAFAPAILVTPLGALSIIISAALAHIILRERLHIFGVL 120

Query: 121 GCILCVVGSTTIVLHAPAEREIESVIEVWNLATEP------ALVITAVFILIFHYIPQYG 174
           GC LCVVGSTTIVLHAP EREIESV EVW+LA +P      ALVITA FIL+FH+IP YG
Sbjct: 121 GCALCVVGSTTIVLHAPQEREIESVPEVWDLAMDPAFLFYAALVITATFILVFHFIPLYG 180

Query: 175 QTHIMVYIGVCSLVGSLSVCIL 196
           QTHIMVYIGVCSLVGSLSVC++
Sbjct: 181 QTHIMVYIGVCSLVGSLSVCLI 202

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255647985|gb|ACU24449.1| unknown [Glycine max]

 Score =  312 bits (800), Expect = 5e-83,   Method: Compositional matrix adjust.
 Identities = 169/191 (88%), Positives = 177/191 (92%), Gaps = 6/191 (3%)

Query: 9   WRDGMSSDNIKGLILALSSSIFIGSSFIVKKKGLKKAGASGVRAGFGGYSYLYEPLWWVG 68
           WR+GMSSDNIKGL LALSSS FIG+SFIVKKKGLKKAGASG+RAG GGYSYLYEPLWWVG
Sbjct: 13  WREGMSSDNIKGLCLALSSSFFIGASFIVKKKGLKKAGASGIRAGSGGYSYLYEPLWWVG 72

Query: 69  MITMVVGEIANFAAYAFAPAILVTPLGALSIIISAALAHIILRERLHIFGILGCILCVVG 128
           MITM+VGEIANFAAYAFAPAILVTPLGALSIIISAALAHIILRERLHIFGILGC+LCVVG
Sbjct: 73  MITMIVGEIANFAAYAFAPAILVTPLGALSIIISAALAHIILRERLHIFGILGCVLCVVG 132

Query: 129 STTIVLHAPAEREIESVIEVWNLATEP------ALVITAVFILIFHYIPQYGQTHIMVYI 182
           STTIVLHAP EREIESV EVW+LA EP      ALVITA FILIFH+IP YGQTHIMVYI
Sbjct: 133 STTIVLHAPQEREIESVSEVWDLAMEPAFLFYAALVITATFILIFHFIPLYGQTHIMVYI 192

Query: 183 GVCSLVGSLSV 193
           GVCSLVGSL+V
Sbjct: 193 GVCSLVGSLTV 203

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356543405|ref|XP_003540151.1| PREDICTED: magnesium transporter NIPA2-like [Glycine max]

 Score =  311 bits (798), Expect = 8e-83,   Method: Compositional matrix adjust.
 Identities = 169/191 (88%), Positives = 177/191 (92%), Gaps = 6/191 (3%)

Query: 9   WRDGMSSDNIKGLILALSSSIFIGSSFIVKKKGLKKAGASGVRAGFGGYSYLYEPLWWVG 68
           WR+GMSSDNIKGL LALSSS FIG+SFIVKKKGLKKAGASG+RAG GGYSYLYEPLWWVG
Sbjct: 13  WREGMSSDNIKGLCLALSSSFFIGASFIVKKKGLKKAGASGIRAGSGGYSYLYEPLWWVG 72

Query: 69  MITMVVGEIANFAAYAFAPAILVTPLGALSIIISAALAHIILRERLHIFGILGCILCVVG 128
           MITM+VGEIANFAAYAFAPAILVTPLGALSIIISAALAHIILRERLHIFGILGC+LCVVG
Sbjct: 73  MITMIVGEIANFAAYAFAPAILVTPLGALSIIISAALAHIILRERLHIFGILGCVLCVVG 132

Query: 129 STTIVLHAPAEREIESVIEVWNLATEP------ALVITAVFILIFHYIPQYGQTHIMVYI 182
           STTIVLHAP EREIESV EVW+LA EP      ALVITA FILIFH+IP YGQTHIMVYI
Sbjct: 133 STTIVLHAPQEREIESVSEVWDLAMEPAFLFYAALVITATFILIFHFIPLYGQTHIMVYI 192

Query: 183 GVCSLVGSLSV 193
           GVCSLVGSL+V
Sbjct: 193 GVCSLVGSLTV 203

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	209
TAIR|locus:2016084	343	AT1G71900 "AT1G71900" [Arabido	0.918	0.559	0.554	2.4e-51
TAIR|locus:2009343	368	AT1G34470 "AT1G34470" [Arabido	0.918	0.521	0.534	2e-49
TAIR|locus:2136912	386	AT4G09640 "AT4G09640" [Arabido	0.889	0.481	0.517	2e-47
TAIR|locus:2076186	335	AT3G23870 "AT3G23870" [Arabido	0.875	0.546	0.476	1.2e-42
TAIR|locus:2119540	336	AT4G13800 [Arabidopsis thalian	0.866	0.538	0.486	1.2e-42
TAIR|locus:2047112	328	AT2G21120 [Arabidopsis thalian	0.693	0.442	0.470	1.3e-34
TAIR|locus:2141742	326	AT4G38730 "AT4G38730" [Arabido	0.698	0.447	0.453	9.8e-32
ZFIN|ZDB-GENE-040426-2134	367	nipa2 "non imprinted in Prader	0.717	0.408	0.407	9.4e-27
UNIPROTKB|F1NZY3	378	NIPAL1 "Uncharacterized protei	0.684	0.378	0.429	1.2e-26
MGI|MGI:1913918	359	Nipa2 "non imprinted in Prader	0.717	0.417	0.382	1.9e-26

TAIR|locus:2016084 AT1G71900 "AT1G71900" [Arabidopsis thaliana (taxid:3702)]

 Score = 533 (192.7 bits), Expect = 2.4e-51, P = 2.4e-51
 Identities = 112/202 (55%), Positives = 125/202 (61%)

Query:     1 MADPNGHSWRD---GMSSDNIKXXXXXXXXXXXXXXXXXVXXXXXXXXXXSGVRAGFGGY 57
             MA+ +G SWRD   GMSSDNIK                 V          +G RAG GGY
Sbjct:     1 MAESSG-SWRDSYKGMSSDNIKGLVLALSSSLFIGASFIVKKKGLKKAASTGTRAGVGGY 59

Query:    58 SYLYEPLWWVGMITMVVGEIXXXXXXXXXXXILVTPXXXXXXXXXXXXXXXXXRERLHIF 117
             SYLYEPLWW+GM TM++GEI           ILVTP                 RE+LHIF
Sbjct:    60 SYLYEPLWWIGMTTMLLGEIANFAAYAFAPAILVTPLGAVSIIISAVLAHIILREKLHIF 119

Query:   118 GILGCILCVVGSTTIVLHAPAEREIESVIEVWNLATEPA------LVITAVFILIFHYIP 171
             GILGC LCVVGSTTIVLHAP EREI+SVIEVWNLATEPA      LVI A   LI  ++P
Sbjct:   120 GILGCALCVVGSTTIVLHAPQEREIDSVIEVWNLATEPAFMFYASLVIGAAVFLIIRFVP 179

Query:   172 QYGQTHIMVYIGVCSLVGSLSV 193
             QYGQT++MVYIG+CSLVGSLSV
Sbjct:   180 QYGQTNVMVYIGICSLVGSLSV 201

GO:0003674 "molecular_function" evidence=ND

GO:0005886 "plasma membrane" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2009343 AT1G34470 "AT1G34470" [Arabidopsis thaliana (taxid:3702)]

 Score = 515 (186.3 bits), Expect = 2.0e-49, P = 2.0e-49
 Identities = 108/202 (53%), Positives = 123/202 (60%)

Query:     1 MADPNGHSWRD---GMSSDNIKXXXXXXXXXXXXXXXXXVXXXXXXXXXXSGVRAGFGGY 57
             MA  +G SWRD   GMSSDNIK                 V          SG+RAG GGY
Sbjct:     1 MASLSG-SWRDAYKGMSSDNIKGLVLALSSSLFIGASFIVKKKGLKRAGASGLRAGSGGY 59

Query:    58 SYLYEPLWWVGMITMVVGEIXXXXXXXXXXXILVTPXXXXXXXXXXXXXXXXXRERLHIF 117
             SYL EPLWWVGMITM+VGEI           ILVTP                  E+LH F
Sbjct:    60 SYLLEPLWWVGMITMIVGEIANFAAYAFAPAILVTPLGALSIIISAALAHVILHEKLHTF 119

Query:   118 GILGCILCVVGSTTIVLHAPAEREIESVIEVWNLATEPAL------VITAVFILIFHYIP 171
             G+LGC+LCVVGS TIVLHAP E+EI+SV++VWNLATEPA       V+ A  ILI  ++P
Sbjct:   120 GLLGCVLCVVGSITIVLHAPQEQEIDSVLQVWNLATEPAFLLYAAAVVGAAIILIVQFVP 179

Query:   172 QYGQTHIMVYIGVCSLVGSLSV 193
             QYGQ+H+MVYIGVCSLVGSLSV
Sbjct:   180 QYGQSHVMVYIGVCSLVGSLSV 201

GO:0003674 "molecular_function" evidence=ND

GO:0005886 "plasma membrane" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2136912 AT4G09640 "AT4G09640" [Arabidopsis thaliana (taxid:3702)]

 Score = 496 (179.7 bits), Expect = 2.0e-47, P = 2.0e-47
 Identities = 101/195 (51%), Positives = 117/195 (60%)

Query:     8 SWRD---GMSSDNIKXXXXXXXXXXXXXXXXXVXXXXXXXXXXSGVRAGFGGYSYLYEPL 64
             SWRD   GMSSDN+K                 V          SG+RAG GGYSYL EPL
Sbjct:     7 SWRDAYKGMSSDNVKGLVLALSSSIFIGASFIVKKKGLKKAGASGLRAGSGGYSYLLEPL 66

Query:    65 WWVGMITMVVGEIXXXXXXXXXXXILVTPXXXXXXXXXXXXXXXXXRERLHIFGILGCIL 124
             WW+GMITM+VGEI           ILVTP                 +E+LH FGILGC L
Sbjct:    67 WWIGMITMIVGEIANFAAYAFAPAILVTPLGALSIIISASLAHIILQEKLHTFGILGCAL 126

Query:   125 CVVGSTTIVLHAPAEREIESVIEVWNLATEPAL------VITAVFILIFHYIPQYGQTHI 178
             C+VGS TIVLHAP E++I SV+EVWNLATEPA       V+ A  +LI  +IP YGQ+H+
Sbjct:   127 CIVGSVTIVLHAPQEQDIVSVLEVWNLATEPAFLFYAAAVVGAAIVLIVQFIPLYGQSHV 186

Query:   179 MVYIGVCSLVGSLSV 193
             MVYIGVCSL+GSLSV
Sbjct:   187 MVYIGVCSLIGSLSV 201

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2076186 AT3G23870 "AT3G23870" [Arabidopsis thaliana (taxid:3702)]

 Score = 451 (163.8 bits), Expect = 1.2e-42, P = 1.2e-42
 Identities = 90/189 (47%), Positives = 112/189 (59%)

Query:    11 DGMSSDNIKXXXXXXXXXXXXXXXXXVXXXXXXXXXXSGVRAGFGGYSYLYEPLWWVGMI 70
             D MS DNI                  +          SGVRAG GGY YL EP WW GMI
Sbjct:     2 DQMSPDNINGVILAVSSSIFIGSSFIIKKKGLKKAGASGVRAGEGGYGYLKEPWWWAGMI 61

Query:    71 TMVVGEIXXXXXXXXXXXILVTPXXXXXXXXXXXXXXXXXRERLHIFGILGCILCVVGST 130
             TM+VGE+           ILVTP                 +E+LH+FGILGCILCVVGST
Sbjct:    62 TMIVGEVANFAAYAFAPAILVTPLGALSIIFSAVLAHFILKEKLHMFGILGCILCVVGST 121

Query:   131 TIVLHAPAEREIESVIEVWNLATEP------ALVITAVFILIFHYIPQYGQTHIMVYIGV 184
             TIVLHAP E++IESV ++W LA EP      A+++  V ILIF+Y P+YG+TH++VY+G+
Sbjct:   122 TIVLHAPHEQKIESVKQIWQLAIEPGFLVYSAVIVIVVAILIFYYEPRYGKTHMIVYVGI 181

Query:   185 CSLVGSLSV 193
             CSL+GSL+V
Sbjct:   182 CSLMGSLTV 190

GO:0003674 "molecular_function" evidence=ND

GO:0005886 "plasma membrane" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0016036 "cellular response to phosphate starvation" evidence=RCA

GO:0019375 "galactolipid biosynthetic process" evidence=RCA

GO:0045892 "negative regulation of transcription, DNA-dependent" evidence=RCA

TAIR|locus:2119540 AT4G13800 [Arabidopsis thaliana (taxid:3702)]

 Score = 451 (163.8 bits), Expect = 1.2e-42, P = 1.2e-42
 Identities = 91/187 (48%), Positives = 110/187 (58%)

Query:    13 MSSDNIKXXXXXXXXXXXXXXXXXVXXXXXXXXXXSGVRAGFGGYSYLYEPLWWVGMITM 72
             MS DNI                  +          SG RAG GGY YLYEP WW GMITM
Sbjct:     4 MSPDNIHGVILAVSSSIFIGSSFIIKKKGLKKAGVSGARAGEGGYGYLYEPWWWAGMITM 63

Query:    73 VVGEIXXXXXXXXXXXILVTPXXXXXXXXXXXXXXXXXRERLHIFGILGCILCVVGSTTI 132
             +VGEI           ILVTP                  E+LH+FGILGC+LCVVGSTTI
Sbjct:    64 IVGEIANFAAYAFAPAILVTPLGALSIIFSAVLAHFILEEKLHMFGILGCVLCVVGSTTI 123

Query:   133 VLHAPAEREIESVIEVWNLATEP------ALVITAVFILIFHYIPQYGQTHIMVYIGVCS 186
             VLHAP E+ IESV +VW+LATEP      A+V+  V  LIF+Y P+YG+TH++VY+G+CS
Sbjct:   124 VLHAPHEQGIESVKQVWHLATEPGFLAYSAVVLVVVLALIFYYEPRYGKTHMIVYVGICS 183

Query:   187 LVGSLSV 193
             L+GSL+V
Sbjct:   184 LMGSLTV 190

GO:0005886 "plasma membrane" evidence=ISM;IDA

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2047112 AT2G21120 [Arabidopsis thaliana (taxid:3702)]

 Score = 375 (137.1 bits), Expect = 1.3e-34, P = 1.3e-34
 Identities = 71/151 (47%), Positives = 94/151 (62%)

Query:    49 GVRAGFGGYSYLYEPLWWVGMITMVVGEIXXXXXXXXXXXILVTPXXXXXXXXXXXXXXX 108
             G RAG+GGY+YL EPLWW GM+TM+VGE            +LVTP               
Sbjct:    37 GTRAGYGGYTYLLEPLWWAGMVTMIVGEAANFVAYIYAPAVLVTPLGALSIIISAVLAHF 96

Query:   109 XXRERLHIFGILGCILCVVGSTTIVLHAPAEREIESVIEVWNLATEPALVI------TAV 162
               +E+L   G+LGC+ C+VGS  IV+HAP E+   SV E+WNLAT+PA +I      + V
Sbjct:    97 LLKEKLKKMGVLGCVSCIVGSVVIVIHAPKEQTPNSVEEIWNLATQPAFLIYVAITMSIV 156

Query:   163 FILIFHYIPQYGQTHIMVYIGVCSLVGSLSV 193
               LI H+ P  GQT+I+VYIG+CSL+G+L+V
Sbjct:   157 LALILHFEPLCGQTNILVYIGICSLMGALTV 187

GO:0005886 "plasma membrane" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0009625 "response to insect" evidence=RCA

GO:0009862 "systemic acquired resistance, salicylic acid mediated signaling pathway" evidence=RCA

GO:0031348 "negative regulation of defense response" evidence=RCA

TAIR|locus:2141742 AT4G38730 "AT4G38730" [Arabidopsis thaliana (taxid:3702)]

 Score = 348 (127.6 bits), Expect = 9.8e-32, P = 9.8e-32
 Identities = 69/152 (45%), Positives = 90/152 (59%)

Query:    48 SGVRAGFGGYSYLYEPLWWVGMITMVVGEIXXXXXXXXXXXILVTPXXXXXXXXXXXXXX 107
             +G RAGFGGY+YL EPLWWVG++TM  GEI           +LVTP              
Sbjct:    36 NGTRAGFGGYTYLLEPLWWVGLVTMTFGEIANFVAYVYAPAVLVTPLGALSIIISAVLAH 95

Query:   108 XXXRERLHIFGILGCILCVVGSTTIVLHAPAEREIESVIEVWNLATEPALVI------TA 161
                 E+L   G+ GC+ C+VGS  IV+HAP E+   SV E+W LA +PA +I      + 
Sbjct:    96 FLLDEKLRKMGVWGCVCCIVGSVMIVIHAPQEQTPNSVEEIWKLAMQPAFLIYVAISMSI 155

Query:   162 VFILIFHYIPQYGQTHIMVYIGVCSLVGSLSV 193
             V  LI +  P  GQT+I+VYIG+CSL+GSL+V
Sbjct:   156 VLALILYCEPLCGQTNILVYIGICSLMGSLTV 187

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

GO:0009507 "chloroplast" evidence=ISM

ZFIN|ZDB-GENE-040426-2134 nipa2 "non imprinted in Prader-Willi/Angelman syndrome 2 (human)" [Danio rerio (taxid:7955)]

 Score = 301 (111.0 bits), Expect = 9.4e-27, P = 9.4e-27
 Identities = 64/157 (40%), Positives = 94/157 (59%)

Query:    50 VRAGFGGYSYLYEPLWWVGMITMVVGEIXXXXXXXXXXXILVTPXXXXXXXXXXXXXXXX 109
             +RAG GG++YL E LWW G+++M  GE             LVTP                
Sbjct:    44 MRAGQGGHAYLKEWLWWAGLLSMGAGEAANFAAYAFAPATLVTPLGALSVLVSAVLSSYF 103

Query:   110 XRERLHIFGILGCILCVVGSTTIVLHAPAEREIESVIEVWNLATEPALVI--TAVFI--L 165
               ERL++ G LGC+L ++GSTT+V+HAP E EI+S+ ++     +P  V+  TAV I  L
Sbjct:   104 LTERLNLHGKLGCLLSILGSTTMVIHAPQEEEIDSLKDMAKKLVDPGFVVFATAVIIIAL 163

Query:   166 IFHYI--PQYGQTHIMVYIGVCSLVGSLSV-CILHTG 199
             IF ++  P++GQT+I+VYI +CS++G+LSV C+   G
Sbjct:   164 IFIFVLGPRHGQTNILVYITICSVIGALSVSCVKGLG 200

GO:0016020 "membrane" evidence=IEA

GO:0015095 "magnesium ion transmembrane transporter activity" evidence=IEA

GO:0015693 "magnesium ion transport" evidence=IEA

UNIPROTKB|F1NZY3 NIPAL1 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 300 (110.7 bits), Expect = 1.2e-26, P = 1.2e-26
 Identities = 64/149 (42%), Positives = 86/149 (57%)

Query:    51 RAGFGGYSYLYEPLWWVGMITMVVGEIXXXXXXXXXXXILVTPXXXXXXXXXXXXXXXXX 110
             RAG GGYSYL E LWW G+++M +GE             LVTP                 
Sbjct:    73 RAGQGGYSYLKEWLWWAGLLSMGLGEAANFAAYAFAPATLVTPLGALSVLISAILSSYFL 132

Query:   111 RERLHIFGILGCILCVVGSTTIVLHAPAEREIESVIEVWNLATEPALVITAVF------I 164
             +E+L+I G LGC+LCV+GST +V+HAP E EI S+ E+     +PA V  AV       +
Sbjct:   133 KEKLNIHGKLGCVLCVLGSTVMVIHAPEEEEITSLDEMEIKLQDPAFVAFAVLLMSVALV 192

Query:   165 LIFHYIPQYGQTHIMVYIGVCSLVGSLSV 193
             LIF   P+ GQT+I++YI +CSL+G+ SV
Sbjct:   193 LIFVVAPRRGQTNILIYILICSLIGAFSV 221

GO:0015095 "magnesium ion transmembrane transporter activity" evidence=IEA

GO:0016020 "membrane" evidence=IEA

MGI|MGI:1913918 Nipa2 "non imprinted in Prader-Willi/Angelman syndrome 2 homolog (human)" [Mus musculus (taxid:10090)]

 Score = 298 (110.0 bits), Expect = 1.9e-26, P = 1.9e-26
 Identities = 60/157 (38%), Positives = 93/157 (59%)

Query:    50 VRAGFGGYSYLYEPLWWVGMITMVVGEIXXXXXXXXXXXILVTPXXXXXXXXXXXXXXXX 109
             +RAG GG++YL E LWW G+++M  GE+            LVTP                
Sbjct:    44 MRAGQGGHAYLKEWLWWAGLLSMGAGEVANFAAYAFAPATLVTPLGALSVLVSAILSSYF 103

Query:   110 XRERLHIFGILGCILCVVGSTTIVLHAPAEREIESVIEVWNLATEPALVITAVFI----L 165
               ERL++ G +GC+L ++GST +V+HAP E EIE++ E+ +   +P  V+ A F+    L
Sbjct:   104 LNERLNLHGKIGCLLSILGSTVMVIHAPKEEEIETLNEMSHKLGDPGFVVFATFVVIVAL 163

Query:   166 IFHYI--PQYGQTHIMVYIGVCSLVGSLSV-CILHTG 199
             IF ++  P++GQT+I+VYI +CS++G+ SV C+   G
Sbjct:   164 IFIFVVGPRHGQTNILVYITICSVIGAFSVSCVKGLG 200

GO:0005515 "protein binding" evidence=IPI

GO:0005768 "endosome" evidence=IEA

GO:0005769 "early endosome" evidence=IDA

GO:0005886 "plasma membrane" evidence=IDA

GO:0006810 "transport" evidence=IEA

GO:0006811 "ion transport" evidence=IEA

GO:0015095 "magnesium ion transmembrane transporter activity" evidence=IEA

GO:0015693 "magnesium ion transport" evidence=IEA;IDA

GO:0016020 "membrane" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0034220 "ion transmembrane transport" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: AT1G71900 unknown protein; FUNCTIONS IN- molecular_function unknown; INVOLVED IN- biological_process unknown; LOCATED IN- cellular_component unknown; EXPRESSED IN- 22 plant structures; EXPRESSED DURING- 13 growth stages; CONTAINS InterPro DOMAIN/s- Protein of unknown function DUF803 (InterPro-IPR008521); BEST Arabidopsis thaliana protein match is- permease-related (TAIR-AT1G34470.1); Has 875 Blast hits to 858 proteins in 150 species- Archae - 0; Bacteria - 55; Metazoa - 361; Fungi - 238; Plants - 146; Viruses - 0; Other Eukaryotes - 75 (source- NCBI BLink). (343 aa) (Arabidopsis thaliana)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	209
pfam05653	300	pfam05653, Mg_trans_NIPA, Magnesium transporter NI	9e-88

>gnl|CDD|114381 pfam05653, Mg_trans_NIPA, Magnesium transporter NIPA

 Score =  260 bits (666), Expect = 9e-88
 Identities = 123/187 (65%), Positives = 150/187 (80%), Gaps = 6/187 (3%)

Query: 13  MSSDNIKGLILALSSSIFIGSSFIVKKKGLKKAGASGVRAGFGGYSYLYEPLWWVGMITM 72
           M++DN  GLILA+SSSIFIGSSFI+KKKGL +    G+RAG GGY YL E LWW G++TM
Sbjct: 1   MNTDNYIGLILAVSSSIFIGSSFIIKKKGLLRLARGGMRAGEGGYGYLKEWLWWAGLLTM 60

Query: 73  VVGEIANFAAYAFAPAILVTPLGALSIIISAALAHIILRERLHIFGILGCILCVVGSTTI 132
           +VGE ANFAAYAFAPA LVTPLGALS+IISA L+   L E+L++FG LGC+LC+VGST I
Sbjct: 61  IVGEAANFAAYAFAPATLVTPLGALSVIISAVLSSFFLNEKLNLFGKLGCVLCIVGSTVI 120

Query: 133 VLHAPAEREIESVIEVWNLATEP------ALVITAVFILIFHYIPQYGQTHIMVYIGVCS 186
           V+HAP E+EIESV EVWNLAT+P       LV+  V ILIF   P++GQT+I+VYI +CS
Sbjct: 121 VIHAPKEQEIESVREVWNLATDPGFLVYVILVVGVVLILIFFVEPRHGQTNILVYITICS 180

Query: 187 LVGSLSV 193
           L+GSL+V
Sbjct: 181 LIGSLTV 187

NIPA (nonimprinted in Prader-Willi/Angelman syndrome) is a family of integral membrane proteins which function as magnesium transporters. Length = 300

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	209
KOG2922	335	consensus Uncharacterized conserved protein [Funct	100.0
PF05653	300	Mg_trans_NIPA: Magnesium transporter NIPA; InterPr	100.0
PRK02971	129	4-amino-4-deoxy-L-arabinose-phosphoundecaprenol fl	98.8
COG2510	140	Predicted membrane protein [Function unknown]	98.64
PF10639	113	UPF0546: Uncharacterised protein family UPF0546; I	98.61
PRK15051	111	4-amino-4-deoxy-L-arabinose-phosphoundecaprenol fl	98.54
PF13536	113	EmrE: Multidrug resistance efflux transporter	98.49
PRK10532	293	threonine and homoserine efflux system; Provisiona	98.17
TIGR03340	281	phn_DUF6 phosphonate utilization associated putati	98.12
TIGR00950	260	2A78 Carboxylate/Amino Acid/Amine Transporter.	98.01
PLN00411	358	nodulin MtN21 family protein; Provisional	97.9
PRK10452	120	multidrug efflux system protein MdtJ; Provisional	97.76
PF00892	126	EamA: EamA-like transporter family; InterPro: IPR0	97.76
TIGR03340	281	phn_DUF6 phosphonate utilization associated putati	97.64
PRK11689	295	aromatic amino acid exporter; Provisional	97.6
PRK09541	110	emrE multidrug efflux protein; Reviewed	97.6
PRK15430	296	putative chloramphenical resistance permease RarD;	97.58
TIGR00950	260	2A78 Carboxylate/Amino Acid/Amine Transporter.	97.55
PRK11453	299	O-acetylserine/cysteine export protein; Provisiona	97.49
PRK11272	292	putative DMT superfamily transporter inner membran	97.42
PF06027	334	DUF914: Eukaryotic protein of unknown function (DU	97.4
PRK11689	295	aromatic amino acid exporter; Provisional	97.22
PF00893	93	Multi_Drug_Res: Small Multidrug Resistance protein	97.2
PF04142	244	Nuc_sug_transp: Nucleotide-sugar transporter; Inte	97.2
PRK11453	299	O-acetylserine/cysteine export protein; Provisiona	97.19
COG0697	292	RhaT Permeases of the drug/metabolite transporter	97.14
TIGR00776	290	RhaT RhaT L-rhamnose-proton symporter family prote	97.09
TIGR00688	256	rarD rarD protein. This uncharacterized protein is	97.03
TIGR00776	290	RhaT RhaT L-rhamnose-proton symporter family prote	96.88
COG0697	292	RhaT Permeases of the drug/metabolite transporter	96.8
TIGR00817	302	tpt Tpt phosphate/phosphoenolpyruvate translocator	96.71
PF08449	303	UAA: UAA transporter family; InterPro: IPR013657 T	96.58
PRK10650	109	multidrug efflux system protein MdtI; Provisional	96.51
PRK15430	296	putative chloramphenical resistance permease RarD;	96.38
PRK11431	105	multidrug efflux system protein; Provisional	96.37
PTZ00343	350	triose or hexose phosphate/phosphate translocator;	96.31
PF06800	269	Sugar_transport: Sugar transport protein; InterPro	96.3
KOG4510	346	consensus Permease of the drug/metabolite transpor	96.25
PF06027	334	DUF914: Eukaryotic protein of unknown function (DU	96.19
PLN00411	358	nodulin MtN21 family protein; Provisional	96.03
PRK11272	292	putative DMT superfamily transporter inner membran	95.99
TIGR00817	302	tpt Tpt phosphate/phosphoenolpyruvate translocator	95.91
PF03151	153	TPT: Triose-phosphate Transporter family; InterPro	95.41
COG2076	106	EmrE Membrane transporters of cations and cationic	95.38
TIGR00803	222	nst UDP-galactose transporter. NSTs generally appe	94.6
COG5006	292	rhtA Threonine/homoserine efflux transporter [Amin	94.57
KOG2765	416	consensus Predicted membrane protein [Function unk	94.47
PF06800	269	Sugar_transport: Sugar transport protein; InterPro	94.1
PRK13499	345	rhamnose-proton symporter; Provisional	94.01
PRK10532	293	threonine and homoserine efflux system; Provisiona	93.13
COG2962	293	RarD Predicted permeases [General function predict	92.91
PF08449	303	UAA: UAA transporter family; InterPro: IPR013657 T	92.52
KOG4831	125	consensus Unnamed protein [Function unknown]	92.45
KOG3912	372	consensus Predicted integral membrane protein [Gen	92.17
KOG2234	345	consensus Predicted UDP-galactose transporter [Car	91.42
PRK02237	109	hypothetical protein; Provisional	89.99
PTZ00343	350	triose or hexose phosphate/phosphate translocator;	89.61
COG1742	109	Uncharacterized conserved protein [Function unknow	88.84
PF04142	244	Nuc_sug_transp: Nucleotide-sugar transporter; Inte	88.22
KOG1441	316	consensus Glucose-6-phosphate/phosphate and phosph	82.13
KOG2765	416	consensus Predicted membrane protein [Function unk	81.46
KOG2766	336	consensus Predicted membrane protein [Function unk	80.9
PF02694	107	UPF0060: Uncharacterised BCR, YnfA/UPF0060 family;	80.62

>KOG2922 consensus Uncharacterized conserved protein [Function unknown]

Probab=100.00  E-value=1.5e-54  Score=384.81  Aligned_cols=206  Identities=68%  Similarity=1.111  Sum_probs=192.1

Q ss_pred             CCCCCCcccc--CCCCchhHHHHHHHHHHHHHHHHHHHHHhhHHHhhccCcccCCCCccccchhHHHHHHHHHHHHHHHH
Q 028389            2 ADPNGHSWRD--GMSSDNIKGLILALSSSIFIGSSFIVKKKGLKKAGASGVRAGFGGYSYLYEPLWWVGMITMVVGEIAN   79 (209)
Q Consensus         2 ~~~~~~~~~~--~~~~~~~iGi~LAl~ss~~i~~g~vlqK~~~~~~~~~~~~a~~~~~~~l~~~~W~~G~~l~~lG~~~~   79 (209)
                      +.-+|..|++  ++++++++|+.||+.||+++|.++++|||+++|.++.+.|+++++++|++.|+||+|++.|++||++|
T Consensus         2 ~~~sg~~~~~~~~~~~d~~~G~~LaissS~~Ig~sfilkKkgl~r~~~~~~ra~~gg~~yl~~~~Ww~G~ltm~vGei~N   81 (335)
T KOG2922|consen    2 ASSSGSWRDEMKRMSSDNIIGLVLAISSSIFIGSSFILKKKGLKRAGASGLRAGEGGYGYLKEPLWWAGMLTMIVGEIAN   81 (335)
T ss_pred             CCCCcchHHHHhhhccCceeeeeehhhccEEEeeehhhhHHHHHHHhhhcccccCCCcchhhhHHHHHHHHHHHHHhHhh
Confidence            3445555543  46899999999999999999999999999999998888999999999999999999999999999999


Q ss_pred             HHHHhhccchhhhcchhhhHHHHHHHHHHHhhcccccccchhhhHheeceeeeEeecCCccccCCHHHHHHHhcchhHH-
Q 028389           80 FAAYAFAPAILVTPLGALSIIISAALAHIILRERLHIFGILGCILCVVGSTTIVLHAPAEREIESVIEVWNLATEPALV-  158 (209)
Q Consensus        80 f~Al~fap~slV~PLga~~lv~~~ila~~~L~E~l~~~~~~G~~l~i~G~~lvv~~a~~~~~~~t~~el~~~~~~p~~v-  158 (209)
                      |+||+|||+++|+||||+++++|+++|+++|||+++..+++||++|++|++++|+|+|+|++..|.+|+++++++|.|+ 
T Consensus        82 FaAYaFAPasLVtPLGAlsvi~saila~~~L~Ekl~~~g~lGc~l~v~Gst~iV~haP~e~~i~t~~el~~~~~~~~Fli  161 (335)
T KOG2922|consen   82 FAAYAFAPASLVTPLGALSVIISAILASFFLKEKLNLLGILGCVLCVVGSTTIVIHAPKEQEIESVEEVWELATEPGFLV  161 (335)
T ss_pred             HHHHhhchHhhhccchhHHHHHHHHHHHHHHHHHHHHhhhhheeEEecccEEEEEecCcccccccHHHHHHHhcCccHHH
Confidence            9999999999999999999999999999999999999999999999999999999999999999999999999999943 


Q ss_pred             -----HHHHHhhheeeeeccCceeeEEeeeeehhccceeeEehhhhhccceeee
Q 028389          159 -----ITAVFILIFHYIPQYGQTHIMVYIGVCSLVGSLSVCILHTGTGNFVIAI  207 (209)
Q Consensus       159 -----~~~~l~l~~~~~~r~g~~~~lvyi~icsl~gs~tVl~~K~~s~~~~~~~  207 (209)
                           +.+..++++++.||+|++|+++|+++||++||+||+++|++++|+.+|+
T Consensus       162 y~~~iil~~~il~~~~~p~~g~tnilvyi~i~s~iGS~tV~svKalg~aiklt~  215 (335)
T KOG2922|consen  162 YVIIIILIVLILIFFYAPRYGQTNILVYIGICSLIGSLTVMSVKALGIAIKLTF  215 (335)
T ss_pred             HHHHHHHHHHHHheeecccccccceeehhhHhhhhcceeeeeHHHHHHHHHHHh
Confidence                 3456677888899999999999999999999999999999999998764

>PF05653 Mg_trans_NIPA: Magnesium transporter NIPA; InterPro: IPR008521 This family consists of several eukaryotic proteins of unknown function

Probab=100.00  E-value=5.8e-47  Score=337.32  Aligned_cols=194  Identities=43%  Similarity=0.767  Sum_probs=179.6

Q ss_pred             CCCchhHHHHHHHHHHHHHHHHHHHHHhhHHHhhccCcccCCCCccccchhHHHHHHHHHHHHHHHHHHHHhhccchhhh
Q 028389           13 MSSDNIKGLILALSSSIFIGSSFIVKKKGLKKAGASGVRAGFGGYSYLYEPLWWVGMITMVVGEIANFAAYAFAPAILVT   92 (209)
Q Consensus        13 ~~~~~~iGi~LAl~ss~~i~~g~vlqK~~~~~~~~~~~~a~~~~~~~l~~~~W~~G~~l~~lG~~~~f~Al~fap~slV~   92 (209)
                      +++++++|+.+|++||+++++|+++|||+++|+++++.|+++++++|+|||+||+|+.+|++|+++|+.||+|||+++||
T Consensus         1 ~~~~~~iGv~lav~ss~~~~~g~~lqk~~~~r~~~~~~~~~~~~~~~l~~~~W~~G~~~~~~g~~~~~~Al~~ap~slv~   80 (300)
T PF05653_consen    1 MNTDFYIGVLLAVVSSIFIAVGFNLQKKSHLRLPRGSLRAGSGGRSYLRRPLWWIGLLLMVLGEILNFVALGFAPASLVA   80 (300)
T ss_pred             CCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccccchhhHHHhhHHHHHHHHHHhcchHHHHHHHHhhhHHHHH
Confidence            46889999999999999999999999999999888666666678899999999999999999999999999999999999


Q ss_pred             cchhhhHHHHHHHHHHHhhcccccccchhhhHheeceeeeEeecCCccccCCHHHHHHHhcchhHH------HHHHHhhh
Q 028389           93 PLGALSIIISAALAHIILRERLHIFGILGCILCVVGSTTIVLHAPAEREIESVIEVWNLATEPALV------ITAVFILI  166 (209)
Q Consensus        93 PLga~~lv~~~ila~~~L~E~l~~~~~~G~~l~i~G~~lvv~~a~~~~~~~t~~el~~~~~~p~~v------~~~~l~l~  166 (209)
                      |+|++++++|++++++++|||++++|+.|+++|+.|+++++.++|++++++|.+|+.+++++|.++      .....+++
T Consensus        81 Plg~~~lv~~~~~a~~~l~e~~~~~~~~G~~l~i~G~~liv~~~~~~~~~~t~~~l~~~~~~~~fl~y~~~~~~~~~~L~  160 (300)
T PF05653_consen   81 PLGALSLVFNAVLARFFLGEKLTRRDIVGCALIILGSVLIVIFAPKEEPIHTLDELIALLSQPGFLVYFILVLVLILILI  160 (300)
T ss_pred             HHHhhhhhhHHHHhHHHhcccchHhHHhhHHHHHhhheeeEEeCCCCCCcCCHHHHHHHhcCcceehhHHHHHHHHHHHH
Confidence            999999999999999999999999999999999999999999999999999999999999999832      23344566


Q ss_pred             eeeeeccCceeeEEeeeeehhccceeeEehhhhhccceee
Q 028389          167 FHYIPQYGQTHIMVYIGVCSLVGSLSVCILHTGTGNFVIA  206 (209)
Q Consensus       167 ~~~~~r~g~~~~lvyi~icsl~gs~tVl~~K~~s~~~~~~  206 (209)
                      ++..||+|++|+++|+++||++||+||+++|++++++..+
T Consensus       161 ~~~~~r~g~~~i~vyi~i~sl~Gs~tvl~~K~i~~~i~~~  200 (300)
T PF05653_consen  161 FFIKPRYGRRNILVYISICSLIGSFTVLSAKAISILIKLT  200 (300)
T ss_pred             HhhcchhcccceEEEEEEeccccchhhhHHHHHHHHHHHH
Confidence            6778899999999999999999999999999999887654

>PRK02971 4-amino-4-deoxy-L-arabinose-phosphoundecaprenol flippase subunit ArnF; Provisional

Probab=98.80  E-value=1.3e-08  Score=80.84  Aligned_cols=115  Identities=17%  Similarity=0.133  Sum_probs=94.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhhHHHhhccCcccCCC--Cccccchh--HHHHHHHHHHHHHHHHHHHHhhccchhhhcc
Q 028389           19 KGLILALSSSIFIGSSFIVKKKGLKKAGASGVRAGFG--GYSYLYEP--LWWVGMITMVVGEIANFAAYAFAPAILVTPL   94 (209)
Q Consensus        19 iGi~LAl~ss~~i~~g~vlqK~~~~~~~~~~~~a~~~--~~~~l~~~--~W~~G~~l~~lG~~~~f~Al~fap~slV~PL   94 (209)
                      +|..+.+.+.++.+.|-.+-|+|..+.++.+... .+  ......+|  .-+.|+..++++...+..++...|++...|+
T Consensus         2 ~~~~~i~~sv~l~~~gQl~~K~g~~~~g~~~~~~-~~~~~~~~~~~p~~~i~lgl~~~~la~~~w~~aL~~~~ls~Ayp~   80 (129)
T PRK02971          2 MGYLWGLASVLLASVAQLSLKWGMSRLPLLSHAW-DFIAALLAFGLALRAVLLGLAGYALSMLCWLKALRYLPLSRAYPL   80 (129)
T ss_pred             ccHHHHHHHHHHHHHHHHHHHHHHhhCCCccchh-HHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHhCCcHHHHHH
Confidence            4678888999999999999999988765422111 00  00123456  6689999999999999999999999999999


Q ss_pred             hhhhHHHHHHHHHH--HhhcccccccchhhhHheeceeeeEe
Q 028389           95 GALSIIISAALAHI--ILRERLHIFGILGCILCVVGSTTIVL  134 (209)
Q Consensus        95 ga~~lv~~~ila~~--~L~E~l~~~~~~G~~l~i~G~~lvv~  134 (209)
                      -+...+...+.+..  ++||+++.+++.|++++++|++++..
T Consensus        81 ~sl~~~~v~~~~~~~~~~~E~ls~~~~iGi~lIi~GV~lv~~  122 (129)
T PRK02971         81 LSLSYALVYLAAMLLPWFNETFSLKKTLGVACIMLGVWLINL  122 (129)
T ss_pred             HHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHhcc
Confidence            99998888888885  79999999999999999999988743

>COG2510 Predicted membrane protein [Function unknown]

Probab=98.64  E-value=1e-07  Score=76.06  Aligned_cols=112  Identities=27%  Similarity=0.380  Sum_probs=85.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHhhHHHhhcc---Cccc--------------CCC-CccccchhHHH----HHHHHHHHHHHH
Q 028389           21 LILALSSSIFIGSSFIVKKKGLKKAGAS---GVRA--------------GFG-GYSYLYEPLWW----VGMITMVVGEIA   78 (209)
Q Consensus        21 i~LAl~ss~~i~~g~vlqK~~~~~~~~~---~~~a--------------~~~-~~~~l~~~~W~----~G~~l~~lG~~~   78 (209)
                      ...|+.|+++.++.-++-|-|+...+..   -.|+              |+- ...-...+.|.    .| +.-+++-.+
T Consensus         5 ~~~ALLsA~fa~L~~iF~KIGl~~vdp~~At~IRtiVi~~~l~~v~~~~g~~~~~~~~~~k~~lflilSG-la~glswl~   83 (140)
T COG2510           5 IIYALLSALFAGLTPIFAKIGLEGVDPDFATTIRTIVILIFLLIVLLVTGNWQAGGEIGPKSWLFLILSG-LAGGLSWLL   83 (140)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhccccCccHHHHHHHHHHHHHHHHHHHhcCceecccccCcceehhhhHHH-HHHHHHHHH
Confidence            4678999999999999999987643221   0111              110 11112223332    34 445677789


Q ss_pred             HHHHHhhccchhhhcchhhhHHHHHHHHHHHhhcccccccchhhhHheeceeeeE
Q 028389           79 NFAAYAFAPAILVTPLGALSIIISAALAHIILRERLHIFGILGCILCVVGSTTIV  133 (209)
Q Consensus        79 ~f~Al~fap~slV~PLga~~lv~~~ila~~~L~E~l~~~~~~G~~l~i~G~~lvv  133 (209)
                      .|.|+.-.+++.|.|+-..++++..+++..+||||++.+.|+|+.|+++|++++.
T Consensus        84 Yf~ALk~G~as~VvPldk~svvl~~lls~lfL~E~ls~~~~iG~~LI~~Gailvs  138 (140)
T COG2510          84 YFRALKKGKASRVVPLDKTSVVLAVLLSILFLGERLSLPTWIGIVLIVIGAILVS  138 (140)
T ss_pred             HHHHHhcCCcceEEEcccccHHHHHHHHHHHhcCCCCHHHHHHHHHHHhCeeeEe
Confidence            9999999999999999999999999999999999999999999999999998874

>PF10639 UPF0546: Uncharacterised protein family UPF0546; InterPro: IPR018908 This family of proteins has no known function

Probab=98.61  E-value=5e-08  Score=76.15  Aligned_cols=106  Identities=18%  Similarity=0.181  Sum_probs=85.3

Q ss_pred             HHHHHHHHHHHHhhHHHhhccC-c-ccCCCCccccchhHHHHHHHHHHHHHHHHHHHHhhccchhhhcch-hhhHHHHHH
Q 028389           28 SIFIGSSFIVKKKGLKKAGASG-V-RAGFGGYSYLYEPLWWVGMITMVVGEIANFAAYAFAPAILVTPLG-ALSIIISAA  104 (209)
Q Consensus        28 s~~i~~g~vlqK~~~~~~~~~~-~-~a~~~~~~~l~~~~W~~G~~l~~lG~~~~f~Al~fap~slV~PLg-a~~lv~~~i  104 (209)
                      +++.|...-+.|||....++.. . +.-++....++||..++++++.-.|++..+..++-+|.|+.-|+. +++.+++++
T Consensus         5 g~~WG~Tnpfik~g~~~~~~~~~~~~~~~~~~~Ll~n~~y~ipf~lNq~GSv~f~~~L~~~dlSlavPi~Nsl~fvfT~l   84 (113)
T PF10639_consen    5 GILWGCTNPFIKRGSSGLEKVKASLQLLQEIKFLLLNPKYIIPFLLNQSGSVLFFLLLGSADLSLAVPIANSLAFVFTAL   84 (113)
T ss_pred             hHHhcCchHHHHHHHhhcCCccchHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhcCCceeeehHHhHHHHHHHHH
Confidence            4566777788888865543321 1 011234467899999999999999999999999999999999995 999999999


Q ss_pred             HHHHHhhcccccccchhhhHheeceeeeE
Q 028389          105 LAHIILRERLHIFGILGCILCVVGSTTIV  133 (209)
Q Consensus       105 la~~~L~E~l~~~~~~G~~l~i~G~~lvv  133 (209)
                      .+.++-+|..+++.+.|+.+++.|+.+.+
T Consensus        85 ~g~~lge~~~~~~~~~G~~Li~~Gv~Lcv  113 (113)
T PF10639_consen   85 TGWLLGEEVISRRTWLGMALILAGVALCV  113 (113)
T ss_pred             HHHHhcCcccchhHHHHHHHHHcCeeeeC
Confidence            99777666667788999999999998753

Many members are annotated as potential transmembrane proteins.

>PRK15051 4-amino-4-deoxy-L-arabinose-phosphoundecaprenol flippase subunit ArnE; Provisional

Probab=98.54  E-value=3e-07  Score=71.05  Aligned_cols=100  Identities=12%  Similarity=0.175  Sum_probs=76.9

Q ss_pred             HHHHHHHHHHHHHHHHhhHHHhhccCcccCCCCccccchhHHHHHH--HHHHHHHHHHHHHHhhccchhhhcchhhhHHH
Q 028389           24 ALSSSIFIGSSFIVKKKGLKKAGASGVRAGFGGYSYLYEPLWWVGM--ITMVVGEIANFAAYAFAPAILVTPLGALSIII  101 (209)
Q Consensus        24 Al~ss~~i~~g~vlqK~~~~~~~~~~~~a~~~~~~~l~~~~W~~G~--~l~~lG~~~~f~Al~fap~slV~PLga~~lv~  101 (209)
                      -+.+.++-..|....|++.++.+.       ++  -..++..|.+.  ..+.+...+...++...|.+...|+-+++.++
T Consensus         6 l~~ai~~ev~g~~~lK~s~~~~~~-------~~--~~~~~l~~~~~~~~~~~l~~~~~~~al~~iplg~Ay~~~~l~~v~   76 (111)
T PRK15051          6 LVFASLLSVAGQLCQKQATRPVAI-------GK--RRKHIVLWLGLALACLGLAMVLWLLVLQNVPVGIAYPMLSLNFVW   76 (111)
T ss_pred             HHHHHHHHHHHHHHHHHHhccCCc-------ch--hhhHHHHHHHHHHHHHHHHHHHHHHHHhhCChHHHHHHHHHHHHH
Confidence            344455556677788886322111       00  01123445555  56788889999999999999999999999999


Q ss_pred             HHHHHHHHhhcccccccchhhhHheeceeee
Q 028389          102 SAALAHIILRERLHIFGILGCILCVVGSTTI  132 (209)
Q Consensus       102 ~~ila~~~L~E~l~~~~~~G~~l~i~G~~lv  132 (209)
                      +.+++.+++|||++++++.|+++++.|++++
T Consensus        77 ~~~~~~l~f~E~ls~~~~~Gi~lii~Gv~~i  107 (111)
T PRK15051         77 VTLAAVKLWHEPVSPRHWCGVAFIIGGIVIL  107 (111)
T ss_pred             HHHHHHHHhCCCCCHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999998765

>PF13536 EmrE: Multidrug resistance efflux transporter

Probab=98.49  E-value=2.7e-07  Score=70.55  Aligned_cols=69  Identities=29%  Similarity=0.410  Sum_probs=61.2

Q ss_pred             HHHHHHHHHHHHHHHHhhccchhhhcchhhhHHHHHHHHHHHhhcccccccchhhhHheeceeeeEeecC
Q 028389           68 GMITMVVGEIANFAAYAFAPAILVTPLGALSIIISAALAHIILRERLHIFGILGCILCVVGSTTIVLHAP  137 (209)
Q Consensus        68 G~~l~~lG~~~~f~Al~fap~slV~PLga~~lv~~~ila~~~L~E~l~~~~~~G~~l~i~G~~lvv~~a~  137 (209)
                      |.+...++..+.+.|+.++| ..++|+.+++.+++++++..++|||++++++.|++++.+|++++.....
T Consensus        41 g~~~~~~~~~~~~~a~~~~~-~~v~~i~~~~pi~~~ll~~~~~~er~~~~~~~a~~l~~~Gv~li~~~~~  109 (113)
T PF13536_consen   41 GLLGFGVAYLLFFYALSYAP-ALVAAIFSLSPIFTALLSWLFFKERLSPRRWLAILLILIGVILIAWSDL  109 (113)
T ss_pred             HHHHHHHHHHHHHHHHHhCc-HHHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhhhhc
Confidence            44555578899999999999 5999999999999999999999999999999999999999988755443

>PRK10532 threonine and homoserine efflux system; Provisional

Probab=98.17  E-value=4.6e-06  Score=73.43  Aligned_cols=123  Identities=17%  Similarity=0.118  Sum_probs=92.6

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHhhHHHhhccCc---c-----------cCCCCccccchh----HHHHHHHHHHHHHHHH
Q 028389           18 IKGLILALSSSIFIGSSFIVKKKGLKKAGASGV---R-----------AGFGGYSYLYEP----LWWVGMITMVVGEIAN   79 (209)
Q Consensus        18 ~iGi~LAl~ss~~i~~g~vlqK~~~~~~~~~~~---~-----------a~~~~~~~l~~~----~W~~G~~l~~lG~~~~   79 (209)
                      .+|..+++.++++.+...++.||-..+.+....   .           ..++........    .++.|+...+++...+
T Consensus       147 ~~G~ll~l~aa~~~a~~~v~~r~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~lgv~~t~~~~~l~  226 (293)
T PRK10532        147 LTGAALALGAGACWAIYILSGQRAGAEHGPATVAIGSLIAALIFVPIGALQAGEALWHWSILPLGLAVAILSTALPYSLE  226 (293)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHhccCCchHHHHHHHHHHHHHHHHHHHccCcccCCHHHHHHHHHHHHHHHHHHHHHH
Confidence            579999999999999999988875322111000   0           001111111111    2456677777888899


Q ss_pred             HHHHhhccchhhhcchhhhHHHHHHHHHHHhhcccccccchhhhHheeceeeeEeecCCcc
Q 028389           80 FAAYAFAPAILVTPLGALSIIISAALAHIILRERLHIFGILGCILCVVGSTTIVLHAPAER  140 (209)
Q Consensus        80 f~Al~fap~slV~PLga~~lv~~~ila~~~L~E~l~~~~~~G~~l~i~G~~lvv~~a~~~~  140 (209)
                      +.++...|++.++++..+..+++.+++.+++||+++..++.|.++++.|+.......++|.
T Consensus       227 ~~~~~~~~a~~as~~~~l~Pv~a~l~~~l~lgE~~~~~~~iG~~lIl~~~~~~~~~~~~~~  287 (293)
T PRK10532        227 MIALTRLPTRTFGTLMSMEPALAAVSGMIFLGETLTLIQWLALGAIIAASMGSTLTIRREP  287 (293)
T ss_pred             HHHHHhcChhHHHHHHHhHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHHHhcCCCCC
Confidence            9999999999999999999999999999999999999999999999999988765555543

>TIGR03340 phn_DUF6 phosphonate utilization associated putative membrane protein

Probab=98.12  E-value=5.1e-06  Score=72.56  Aligned_cols=114  Identities=24%  Similarity=0.244  Sum_probs=80.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHhhHHHhhcc-Ccc----c--------C---CCCccccchhHHH---HHHHHHHHHHHHHHH
Q 028389           21 LILALSSSIFIGSSFIVKKKGLKKAGAS-GVR----A--------G---FGGYSYLYEPLWW---VGMITMVVGEIANFA   81 (209)
Q Consensus        21 i~LAl~ss~~i~~g~vlqK~~~~~~~~~-~~~----a--------~---~~~~~~l~~~~W~---~G~~l~~lG~~~~f~   81 (209)
                      ..+.+.++++.+....++||...++..- ...    +        .   +...+..++..|+   .+......+..+.+.
T Consensus         3 ~~~~~~aa~~~a~~~~~~k~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   82 (281)
T TIGR03340         3 LTLVVFSALMHAGWNLMAKSHADKEPDFLWWALLAHSVLLTPYGLWYLAQVGWSRLPATFWLLLAISAVANMVYFLGLAQ   82 (281)
T ss_pred             HHHHHHHHHHHHHHHHHHhhcCCchhHHHHHHHHHHHHHHHHHHHHhcccCCCCCcchhhHHHHHHHHHHHHHHHHHHHH
Confidence            4677888888888888888654432210 000    0        0   0111111222221   233345566778888


Q ss_pred             HHhhccchhhhcchhhhHHHHHHHHHHHhhcccccccchhhhHheeceeeeEe
Q 028389           82 AYAFAPAILVTPLGALSIIISAALAHIILRERLHIFGILGCILCVVGSTTIVL  134 (209)
Q Consensus        82 Al~fap~slV~PLga~~lv~~~ila~~~L~E~l~~~~~~G~~l~i~G~~lvv~  134 (209)
                      ++...|++..+|+...+.++.++++..++|||+++++|.|+.+++.|+.++..
T Consensus        83 a~~~~~~~~~~~l~~~~p~~~~l~~~~~~~e~~~~~~~~g~~~~~~Gv~ll~~  135 (281)
T TIGR03340        83 AYHHADVGLVYPLARSSPLLVAIWATLTLGETLSPLAWLGILIITLGLLVLGL  135 (281)
T ss_pred             HHhcCChhhhhhHHhhhHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhc
Confidence            99999999999999999999999999999999999999999999999987653

This family of hydrophobic proteins has some homology to families of integral membrane proteins such as (pfam00892) and may be a permease. It occurs in the vicinity of various types of operons for the catabolism of phosphonates in Vibrio, Pseudomonas, Polaromonas and Thiomicrospira.

>TIGR00950 2A78 Carboxylate/Amino Acid/Amine Transporter

Probab=98.01  E-value=3.6e-05  Score=65.42  Aligned_cols=114  Identities=20%  Similarity=0.232  Sum_probs=86.3

Q ss_pred             chhHHHHHHHHHHHHHHHHHHHHHhhHHHhhccC---c--cc------------CCCCccccchhHHH----HHHHHHHH
Q 028389           16 DNIKGLILALSSSIFIGSSFIVKKKGLKKAGASG---V--RA------------GFGGYSYLYEPLWW----VGMITMVV   74 (209)
Q Consensus        16 ~~~iGi~LAl~ss~~i~~g~vlqK~~~~~~~~~~---~--~a------------~~~~~~~l~~~~W~----~G~~l~~l   74 (209)
                      ....|..+++.++++.+...+++||...+.+...   .  +.            ..++........|+    .|.....+
T Consensus       125 ~~~~G~~~~l~a~~~~a~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  204 (260)
T TIGR00950       125 INPAGLLLGLGSGISFALGTVLYKRLVKKEGPELLQFTGWVLLLGALLLLPFAWFLGPNPQALSLQWGALLYLGLIGTAL  204 (260)
T ss_pred             ccHHHHHHHHHHHHHHHHHHHHHhHHhhcCCchHHHHHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHHHHH
Confidence            3467999999999999999999999654332110   0  00            01111112222332    34444567


Q ss_pred             HHHHHHHHHhhccchhhhcchhhhHHHHHHHHHHHhhcccccccchhhhHheece
Q 028389           75 GEIANFAAYAFAPAILVTPLGALSIIISAALAHIILRERLHIFGILGCILCVVGS  129 (209)
Q Consensus        75 G~~~~f~Al~fap~slV~PLga~~lv~~~ila~~~L~E~l~~~~~~G~~l~i~G~  129 (209)
                      +..+++.++...|++.++.+..+..++..+++.+++||+++..++.|+.+++.|+
T Consensus       205 ~~~~~~~a~~~~~~~~~s~~~~~~pv~~~ll~~~~~~E~~~~~~~~G~~li~~g~  259 (260)
T TIGR00950       205 AYFLWNKGLTLVDPSAASILALAEPLVALLLGLLILGETLSLPQLIGGALIIAAV  259 (260)
T ss_pred             HHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhc
Confidence            8889999999999999999999999999999999999999999999999999885

>PLN00411 nodulin MtN21 family protein; Provisional

Probab=97.90  E-value=3.8e-05  Score=70.43  Aligned_cols=126  Identities=19%  Similarity=0.224  Sum_probs=87.6

Q ss_pred             CCchhHHHHHHHHHHHHHHHHHHHHHhhHHHhhccCc---c-------------c---CCCCccccch-hHHHHHHHH--
Q 028389           14 SSDNIKGLILALSSSIFIGSSFIVKKKGLKKAGASGV---R-------------A---GFGGYSYLYE-PLWWVGMIT--   71 (209)
Q Consensus        14 ~~~~~iGi~LAl~ss~~i~~g~vlqK~~~~~~~~~~~---~-------------a---~~~~~~~l~~-~~W~~G~~l--   71 (209)
                      ..++.+|..+++.|+++.+...++||+-..+-+....   -             .   ..+....... ..+...++.  
T Consensus       184 ~~~~~lG~~l~l~aa~~wa~~~il~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~y~~  263 (358)
T PLN00411        184 NSDWLIGGALLTIQGIFVSVSFILQAHIMSEYPAAFTVSFLYTVCVSIVTSMIGLVVEKNNPSVWIIHFDITLITIVTMA  263 (358)
T ss_pred             cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHhHHHHHHHHHHHHHHHHHHHHHccCCcccceeccchHHHHHHHHH
Confidence            3457889999999999999999999986544211100   0             0   0000111110 111112221  


Q ss_pred             --HHHHHHHHHHHHhhccchhhhcchhhhHHHHHHHHHHHhhcccccccchhhhHheeceeeeEeecCCc
Q 028389           72 --MVVGEIANFAAYAFAPAILVTPLGALSIIISAALAHIILRERLHIFGILGCILCVVGSTTIVLHAPAE  139 (209)
Q Consensus        72 --~~lG~~~~f~Al~fap~slV~PLga~~lv~~~ila~~~L~E~l~~~~~~G~~l~i~G~~lvv~~a~~~  139 (209)
                        ..++...+..+....+++.++...-+..+++++++..+++|+++..+++|+++++.|..++.....+|
T Consensus       264 i~t~lay~lw~~~v~~~ga~~as~~~~L~PV~a~llg~l~LgE~lt~~~~iG~~LIl~Gv~l~~~~~~~~  333 (358)
T PLN00411        264 IITSVYYVIHSWTVRHKGPLYLAIFKPLSILIAVVMGAIFLNDSLYLGCLIGGILITLGFYAVMWGKANE  333 (358)
T ss_pred             HHHHHHHHHHHHHHhccCchHHHHHHhHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHHHhhhhhh
Confidence              22355667778888999999999999999999999999999999999999999999998875443333

>PRK10452 multidrug efflux system protein MdtJ; Provisional

Probab=97.76  E-value=4.6e-05  Score=60.05  Aligned_cols=76  Identities=14%  Similarity=0.125  Sum_probs=66.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhccchhhhcc-hhhhHHHHHHHHHHHhhcccccccchhhhHheeceeeeEeecCCc
Q 028389           64 LWWVGMITMVVGEIANFAAYAFAPAILVTPL-GALSIIISAALAHIILRERLHIFGILGCILCVVGSTTIVLHAPAE  139 (209)
Q Consensus        64 ~W~~G~~l~~lG~~~~f~Al~fap~slV~PL-ga~~lv~~~ila~~~L~E~l~~~~~~G~~l~i~G~~lvv~~a~~~  139 (209)
                      .|+..+.++++...+...|+...|.++.-|+ .+++.+...+.+.+++||+++..++.|+.+++.|++.+-..+++.
T Consensus        32 ~~~~~i~~~~~sf~~ls~al~~lplsiAYavw~GiG~v~~~~ig~~~f~E~~s~~~~~gi~lIi~GVi~l~l~~~~~  108 (120)
T PRK10452         32 GFILMLVMISLSYIFLSFAVKKIALGVAYALWEGIGILFITLFSVLLFDESLSLMKIAGLTTLVAGIVLIKSGTRKA  108 (120)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhhcCCCCC
Confidence            3566677788888888899999999999999 689999999999999999999999999999999998886555443

>PF00892 EamA: EamA-like transporter family; InterPro: IPR000620 This domain is found in proteins including the Erwinia chrysanthemi PecM protein, which is involved in pectinase, cellulase and blue pigment regulation; and the Salmonella typhimurium PagO protein, the function of which is unknown

Probab=97.76  E-value=2.6e-05  Score=58.15  Aligned_cols=68  Identities=28%  Similarity=0.430  Sum_probs=61.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHhhccchhhhcchhhhHHHHHHHHHHHhhcccccccchhhhHheeceeee
Q 028389           65 WWVGMITMVVGEIANFAAYAFAPAILVTPLGALSIIISAALAHIILRERLHIFGILGCILCVVGSTTI  132 (209)
Q Consensus        65 W~~G~~l~~lG~~~~f~Al~fap~slV~PLga~~lv~~~ila~~~L~E~l~~~~~~G~~l~i~G~~lv  132 (209)
                      ...|.+...++..+.+.++...|++.++++..++.+++.+++..++||+++++++.|+.+++.|+.++
T Consensus        57 ~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~pv~~~i~~~~~~~e~~~~~~~~g~~l~~~g~~l~  124 (126)
T PF00892_consen   57 LFLGLLGTALAYLLYFYALKYISASIVSILQYLSPVFAAILGWLFLGERPSWRQIIGIILIIIGVVLI  124 (126)
T ss_pred             hHhhccceehHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHH
Confidence            34555556788899999999999999999999999999999999999999999999999999998764

Many members of this family are classed as drug/metabolite transporters and have no known function. They are predicted to be integral membrane proteins and many of the proteins contain two copies of this domain [].; GO: 0016020 membrane

>TIGR03340 phn_DUF6 phosphonate utilization associated putative membrane protein

Probab=97.64  E-value=0.00012  Score=63.83  Aligned_cols=113  Identities=19%  Similarity=0.140  Sum_probs=80.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhhHHHhhccC-c-c--c-----C-----------CCCccccchhHH----HHHHHHHHH
Q 028389           19 KGLILALSSSIFIGSSFIVKKKGLKKAGASG-V-R--A-----G-----------FGGYSYLYEPLW----WVGMITMVV   74 (209)
Q Consensus        19 iGi~LAl~ss~~i~~g~vlqK~~~~~~~~~~-~-~--a-----~-----------~~~~~~l~~~~W----~~G~~l~~l   74 (209)
                      -|..+++.++++.+...++.|+...+.+... . .  .     .           ++.......+.|    +.+.....+
T Consensus       144 ~g~~~~l~aal~~a~~~i~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~l  223 (281)
T TIGR03340       144 KAYAWALAAALGTAIYSLSDKAAALGVPAFYSALGYLGIGFLAMGWPFLLLYLKRHGRSMFPYARQILPSATLGGLMIGG  223 (281)
T ss_pred             hHHHHHHHHHHHHHHhhhhccccccchhcccccHHHHHHHHHHHHHHHHHHHHHHhccchhhhHHHHHHHHHHHHHHHHH
Confidence            4677889999999998888887432211100 0 0  0     0           000000111122    233344557


Q ss_pred             HHHHHHHHHhhccchhhhcchhhhHHHHHHHHHHHhhcccccccchhhhHheeceee
Q 028389           75 GEIANFAAYAFAPAILVTPLGALSIIISAALAHIILRERLHIFGILGCILCVVGSTT  131 (209)
Q Consensus        75 G~~~~f~Al~fap~slV~PLga~~lv~~~ila~~~L~E~l~~~~~~G~~l~i~G~~l  131 (209)
                      +...++.++...|++.+.++.-++.++..+++.+++||+++..++.|.++++.|+.+
T Consensus       224 ~~~l~~~al~~~~a~~~~~~~~l~pv~a~l~g~~~lgE~~~~~~~iG~~lil~Gv~l  280 (281)
T TIGR03340       224 AYALVLWAMTRLPVATVVALRNTSIVFAVVLGIWFLNERWYLTRLMGVCIIVAGLVV  280 (281)
T ss_pred             HHHHHHHHHhhCCceEEEeecccHHHHHHHHHHHHhCCCccHHHHHHHHHHHHhHHh
Confidence            788889999999999999999999999999999999999999999999999999764

This family of hydrophobic proteins has some homology to families of integral membrane proteins such as (pfam00892) and may be a permease. It occurs in the vicinity of various types of operons for the catabolism of phosphonates in Vibrio, Pseudomonas, Polaromonas and Thiomicrospira.

>PRK11689 aromatic amino acid exporter; Provisional

Probab=97.60  E-value=0.00016  Score=63.74  Aligned_cols=115  Identities=17%  Similarity=0.068  Sum_probs=84.1

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHhhHHHhhccCcc------------cCCCCccccchh-HHH----HHHHHHHHHHHHH
Q 028389           17 NIKGLILALSSSIFIGSSFIVKKKGLKKAGASGVR------------AGFGGYSYLYEP-LWW----VGMITMVVGEIAN   79 (209)
Q Consensus        17 ~~iGi~LAl~ss~~i~~g~vlqK~~~~~~~~~~~~------------a~~~~~~~l~~~-~W~----~G~~l~~lG~~~~   79 (209)
                      ...|..+++.++++.+.+.++.||-..+.+.....            .-++....--++ .|+    .| ...+++..++
T Consensus       154 ~~~G~~~~l~aa~~~A~~~v~~k~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~-~~t~~~~~l~  232 (295)
T PRK11689        154 NPLSYGLAFIGAFIWAAYCNVTRKYARGKNGITLFFILTALALWIKYFLSPQPAMVFSLPAIIKLLLAA-AAMGFGYAAW  232 (295)
T ss_pred             ChHHHHHHHHHHHHHHHHHHHHhhccCCCCchhHHHHHHHHHHHHHHHHhcCccccCCHHHHHHHHHHH-HHHHHHHHHH
Confidence            35799999999999999999999943221110000            000111111122 221    22 2245677788


Q ss_pred             HHHHhhccchhhhcchhhhHHHHHHHHHHHhhcccccccchhhhHheeceeee
Q 028389           80 FAAYAFAPAILVTPLGALSIIISAALAHIILRERLHIFGILGCILCVVGSTTI  132 (209)
Q Consensus        80 f~Al~fap~slV~PLga~~lv~~~ila~~~L~E~l~~~~~~G~~l~i~G~~lv  132 (209)
                      +.++...|++.++++..+..+++.+++..++||+++..+++|+++++.|+.+.
T Consensus       233 ~~al~~~~a~~~s~~~~l~Pv~a~i~~~~~lgE~~~~~~~iG~~lI~~gv~~~  285 (295)
T PRK11689        233 NVGILHGNMTLLATASYFTPVLSAALAALLLSTPLSFSFWQGVAMVTAGSLLC  285 (295)
T ss_pred             HHHHHccCHHHHHHHHHhHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHhHHHH
Confidence            99999999999999999999999999999999999999999999999998766

>PRK09541 emrE multidrug efflux protein; Reviewed

Probab=97.60  E-value=0.00039  Score=53.90  Aligned_cols=77  Identities=17%  Similarity=0.181  Sum_probs=64.2

Q ss_pred             chhHHH-HHHHHHHHHHHHHHHHHhhccchhhhcc-hhhhHHHHHHHHHHHhhcccccccchhhhHheeceeeeEeecC
Q 028389           61 YEPLWW-VGMITMVVGEIANFAAYAFAPAILVTPL-GALSIIISAALAHIILRERLHIFGILGCILCVVGSTTIVLHAP  137 (209)
Q Consensus        61 ~~~~W~-~G~~l~~lG~~~~f~Al~fap~slV~PL-ga~~lv~~~ila~~~L~E~l~~~~~~G~~l~i~G~~lvv~~a~  137 (209)
                      +++.|. ..+..+++....--.|+.-.|.++.-|. .+++.+.+.+.+.+++||+++..++.|+.+++.|++.+-..++
T Consensus        28 ~~~~~~i~~~~~~~~sf~~l~~al~~ipl~iAYavw~GlG~v~~~l~g~~~f~e~~~~~~~~gi~lIi~GVi~l~l~~~  106 (110)
T PRK09541         28 TRLWPSVGTIICYCASFWLLAQTLAYIPTGIAYAIWSGVGIVLISLLSWGFFGQRLDLPAIIGMMLICAGVLVINLLSR  106 (110)
T ss_pred             CchhHHHHHHHHHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhcCCC
Confidence            345553 4555666777777788888999999999 7799999999999999999999999999999999998855544

>PRK15430 putative chloramphenical resistance permease RarD; Provisional

Probab=97.58  E-value=0.00015  Score=63.89  Aligned_cols=117  Identities=17%  Similarity=0.104  Sum_probs=87.2

Q ss_pred             chhHHHHHHHHHHHHHHHHHHHHHhhHHHhhcc---Cccc------------CCCCc----cccchhHH----HHHHHHH
Q 028389           16 DNIKGLILALSSSIFIGSSFIVKKKGLKKAGAS---GVRA------------GFGGY----SYLYEPLW----WVGMITM   72 (209)
Q Consensus        16 ~~~iGi~LAl~ss~~i~~g~vlqK~~~~~~~~~---~~~a------------~~~~~----~~l~~~~W----~~G~~l~   72 (209)
                      +...|..+.+.++++.+.....-|.. .+.+..   ..|.            -+++.    ...+++.+    ..|...+
T Consensus         5 ~~~~g~~~~l~a~~~wg~~~~~~k~~-~~~~~~~~~~~R~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   83 (296)
T PRK15430          5 QTRQGVLLALAAYFIWGIAPAYFKLI-YYVPADEILTHRVIWSFFFMVVLMSICRQWSYLKTLIQTPQKIFMLAVSAVLI   83 (296)
T ss_pred             hhhhHHHHHHHHHHHHHHHHHHHHHh-cCCCHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHcCHHHHHHHHHHHHHH
Confidence            55789999999999999999888753 111100   0110            00000    01122332    2555667


Q ss_pred             HHHHHHHHHHHhhccchhhhcchhhhHHHHHHHHHHHhhcccccccchhhhHheeceeeeE
Q 028389           73 VVGEIANFAAYAFAPAILVTPLGALSIIISAALAHIILRERLHIFGILGCILCVVGSTTIV  133 (209)
Q Consensus        73 ~lG~~~~f~Al~fap~slV~PLga~~lv~~~ila~~~L~E~l~~~~~~G~~l~i~G~~lvv  133 (209)
                      .+...+.+.++...|++..+-+.....++.++++.+++|||+++++|.|+++...|+.++.
T Consensus        84 ~~~~~~~~~a~~~~~~~~a~~l~~~~Pi~v~l~~~~~l~E~~~~~~~~g~~l~~~Gv~li~  144 (296)
T PRK15430         84 GGNWLLFIWAVNNHHMLEASLGYFINPLVNIVLGMIFLGERFRRMQWLAVILAICGVLVQL  144 (296)
T ss_pred             HHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHH
Confidence            7788899999999999999999999999999999999999999999999999999998764

>TIGR00950 2A78 Carboxylate/Amino Acid/Amine Transporter

Probab=97.55  E-value=0.0001  Score=62.68  Aligned_cols=70  Identities=19%  Similarity=0.212  Sum_probs=63.5

Q ss_pred             HHHHHHHHHHHHHHHHHHhhccchhhhcchhhhHHHHHHHHHHHhhcccccccchhhhHheeceeeeEee
Q 028389           66 WVGMITMVVGEIANFAAYAFAPAILVTPLGALSIIISAALAHIILRERLHIFGILGCILCVVGSTTIVLH  135 (209)
Q Consensus        66 ~~G~~l~~lG~~~~f~Al~fap~slV~PLga~~lv~~~ila~~~L~E~l~~~~~~G~~l~i~G~~lvv~~  135 (209)
                      ..|.....+...+.+.|+.+.|++..+++-++..+++++++..++|||++++++.|+.++++|+.++...
T Consensus        51 ~~~~~~~~l~~~~~~~a~~~~~~~~~~ii~~~~P~~~~~~~~l~~~e~~~~~~~~gi~i~~~Gv~li~~~  120 (260)
T TIGR00950        51 LLGALQIGVFYVLYFVAVKRLPVGEAALLLYLAPLYVTLLSDLMGKERPRKLVLLAAVLGLAGAVLLLSD  120 (260)
T ss_pred             HHHHHHHHHHHHHHHHHHHhcChhhhHHHHhhhHHHHHHHHHHHccCCCcHHHHHHHHHHHHhHHhhccC
Confidence            4555667788889999999999999999999999999999999999999999999999999999887543

>PRK11453 O-acetylserine/cysteine export protein; Provisional

Probab=97.49  E-value=0.00057  Score=60.29  Aligned_cols=114  Identities=21%  Similarity=0.226  Sum_probs=82.5

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHhhHHHhhccCccc-------------------CCCCc------cccchhH-HH----H
Q 028389           18 IKGLILALSSSIFIGSSFIVKKKGLKKAGASGVRA-------------------GFGGY------SYLYEPL-WW----V   67 (209)
Q Consensus        18 ~iGi~LAl~ss~~i~~g~vlqK~~~~~~~~~~~~a-------------------~~~~~------~~l~~~~-W~----~   67 (209)
                      ..|..+++.++++.+...+++||-..+.+......                   .++..      ... ++. |+    .
T Consensus       142 ~~G~~l~l~aal~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~~l  220 (299)
T PRK11453        142 MLGFMLTLAAAFSWACGNIFNKKIMSHSTRPAVMSLVVWSALIPIIPFFVASLILDGSATMIHSLVTI-DMTTILSLMYL  220 (299)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhcccCccchhHHHHHHHHHHHHHHHHHHHHhcCchhhhhhhccC-CHHHHHHHHHH
Confidence            57999999999999999999998432211100000                   00000      011 222 32    3


Q ss_pred             HHHHHHHHHHHHHHHHhhccchhhhcchhhhHHHHHHHHHHHhhcccccccchhhhHheeceeee
Q 028389           68 GMITMVVGEIANFAAYAFAPAILVTPLGALSIIISAALAHIILRERLHIFGILGCILCVVGSTTI  132 (209)
Q Consensus        68 G~~l~~lG~~~~f~Al~fap~slV~PLga~~lv~~~ila~~~L~E~l~~~~~~G~~l~i~G~~lv  132 (209)
                      |+...+++...++.++.-.++.-+.++..+..+++.+++.++++|+++..++.|.+++++|+.+.
T Consensus       221 ~i~~t~~~~~l~~~~l~~~~a~~~s~~~~l~Pv~a~~~~~l~lgE~~~~~~~iG~~lI~~gv~l~  285 (299)
T PRK11453        221 AFVATIVGYGIWGTLLGRYETWRVAPLSLLVPVVGLASAALLLDERLTGLQFLGAVLIMAGLYIN  285 (299)
T ss_pred             HHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHHH
Confidence            34445566677777777789999999999999999999999999999999999999999998754

>PRK11272 putative DMT superfamily transporter inner membrane protein; Provisional

Probab=97.42  E-value=0.0004  Score=61.05  Aligned_cols=117  Identities=13%  Similarity=0.009  Sum_probs=85.6

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHhhHHHhhccC-cc--------------cCCCCccc-cchhHHH----HHHHHHHHHH
Q 028389           17 NIKGLILALSSSIFIGSSFIVKKKGLKKAGASG-VR--------------AGFGGYSY-LYEPLWW----VGMITMVVGE   76 (209)
Q Consensus        17 ~~iGi~LAl~ss~~i~~g~vlqK~~~~~~~~~~-~~--------------a~~~~~~~-l~~~~W~----~G~~l~~lG~   76 (209)
                      ...|..+++.++++.+.+.+.+||...+.+... ..              ..++.... .....|+    .|....+++.
T Consensus       148 ~~~G~l~~l~a~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~i~~s~~~~  227 (292)
T PRK11272        148 NPWGAILILIASASWAFGSVWSSRLPLPVGMMAGAAEMLAAGVVLLIASLLSGERLTALPTLSGFLALGYLAVFGSIIAI  227 (292)
T ss_pred             chHHHHHHHHHHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHHHHHHHHHHcCCcccccCCHHHHHHHHHHHHHHHHHHH
Confidence            357999999999999999999988422211000 00              00011111 1112232    3444456777


Q ss_pred             HHHHHHHhhccchhhhcchhhhHHHHHHHHHHHhhcccccccchhhhHheeceeeeE
Q 028389           77 IANFAAYAFAPAILVTPLGALSIIISAALAHIILRERLHIFGILGCILCVVGSTTIV  133 (209)
Q Consensus        77 ~~~f~Al~fap~slV~PLga~~lv~~~ila~~~L~E~l~~~~~~G~~l~i~G~~lvv  133 (209)
                      .+++.++...|++.+..+..+..+++++++.+++||+++..++.|+++++.|+.+..
T Consensus       228 ~l~~~~~~~~~~~~~s~~~~l~Pi~a~i~~~~~l~E~~t~~~iiG~~lIi~gv~~~~  284 (292)
T PRK11272        228 SAYMYLLRNVRPALATSYAYVNPVVAVLLGTGLGGETLSPIEWLALGVIVFAVVLVT  284 (292)
T ss_pred             HHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHHHHH
Confidence            888899999999999999999999999999999999999999999999999987653

>PF06027 DUF914: Eukaryotic protein of unknown function (DUF914); InterPro: IPR009262 This family consists of several hypothetical proteins of unknown function

Probab=97.40  E-value=0.00028  Score=64.39  Aligned_cols=77  Identities=27%  Similarity=0.455  Sum_probs=65.1

Q ss_pred             cchhHHHHHH--HHHHHHHHHHHHHHhhccchhhhcchhhhHHHHHHHHHHHhhcccccccchhhhHheeceeeeEeec
Q 028389           60 LYEPLWWVGM--ITMVVGEIANFAAYAFAPAILVTPLGALSIIISAALAHIILRERLHIFGILGCILCVVGSTTIVLHA  136 (209)
Q Consensus        60 l~~~~W~~G~--~l~~lG~~~~f~Al~fap~slV~PLga~~lv~~~ila~~~L~E~l~~~~~~G~~l~i~G~~lvv~~a  136 (209)
                      +|+|.|.-=+  ++.+.|......||.+.+.+-+|=|.+.+++++.+++.++||||.++.++.|+.+|+.|..+++...
T Consensus        75 ~~~~~w~y~lla~~Dv~aN~~~v~a~~yTsvtS~~lL~~~~i~~~~~LS~~fL~~ry~~~~~~gv~i~i~Gv~lv~~sD  153 (334)
T PF06027_consen   75 LKRPWWKYFLLALLDVEANYLVVLAYQYTSVTSVQLLDCTSIPFVMILSFIFLKRRYSWFHILGVLICIAGVVLVVVSD  153 (334)
T ss_pred             cchhHHHHHHHHHHHHHHHHHHHHHhhcccHhHHHhhhhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHhhhhheeeec
Confidence            4555554222  3456777777899999999999999999999999999999999999999999999999988887664

Some of the sequences in this family are annotated as putative membrane proteins.

>PRK11689 aromatic amino acid exporter; Provisional

Probab=97.22  E-value=0.0012  Score=58.23  Aligned_cols=114  Identities=16%  Similarity=0.163  Sum_probs=73.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhHHHhhcc---Cccc---------CCCCccccch---hHHHHHHHHHHHHHHHHHHHHh
Q 028389           20 GLILALSSSIFIGSSFIVKKKGLKKAGAS---GVRA---------GFGGYSYLYE---PLWWVGMITMVVGEIANFAAYA   84 (209)
Q Consensus        20 Gi~LAl~ss~~i~~g~vlqK~~~~~~~~~---~~~a---------~~~~~~~l~~---~~W~~G~~l~~lG~~~~f~Al~   84 (209)
                      +..+++..+++.+..+...|.+....+.-   ..|-         -.. ++..|+   +....|.+.+.....+.+.++.
T Consensus         5 ~~l~~l~a~~~Wg~~~~~~k~~~~~~~P~~~~~~R~~~a~l~l~~~~~-~~~~~~~~~~~~~~~~l~~~~~~~~~~~a~~   83 (295)
T PRK11689          5 ATLIGLIAILLWSTMVGLIRGVSESLGPVGGAAMIYSVSGLLLLLTVG-FPRLRQFPKRYLLAGGLLFVSYEICLALSLG   83 (295)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHccCChHHHHHHHHHHHHHHHHHHcc-ccccccccHHHHHHHhHHHHHHHHHHHHHHH
Confidence            35567788888888888888764432110   0110         000 111121   1122333334444445556665


Q ss_pred             hc----cchhhhcchhhhHHHHHHHHHHHhhcccccccchhhhHheeceeeeEe
Q 028389           85 FA----PAILVTPLGALSIIISAALAHIILRERLHIFGILGCILCVVGSTTIVL  134 (209)
Q Consensus        85 fa----p~slV~PLga~~lv~~~ila~~~L~E~l~~~~~~G~~l~i~G~~lvv~  134 (209)
                      ++    |+...+-+.+...++..++++.++|||++++++.|+++...|+.++..
T Consensus        84 ~~~~~~~a~~a~~l~~~~Pi~~~ll~~~~~~e~~~~~~~~g~~l~~~Gv~li~~  137 (295)
T PRK11689         84 YANTRRQAIEVGMVNYLWPSLTILFAVLFNGQKANWLLIPGLLLALAGVAWVLG  137 (295)
T ss_pred             HhhccccchHHHHHHHHhHHHHHHHHHHHhcCCccHHHHHHHHHHHHhHhheec
Confidence            43    555556677888999999999999999999999999999999988764

>PF00893 Multi_Drug_Res: Small Multidrug Resistance protein; InterPro: IPR000390 Members of this family which have been characterised, belong to the small multidrug resistance (Smr) protein family and are integral membrane proteins

Probab=97.20  E-value=0.0018  Score=48.27  Aligned_cols=65  Identities=14%  Similarity=0.008  Sum_probs=36.5

Q ss_pred             chhHHHHHHH-HHHHHHHHHHHHHhhccchhhhcc-hhhhHHHHHHHHHHHhhcccccccchhhhHh
Q 028389           61 YEPLWWVGMI-TMVVGEIANFAAYAFAPAILVTPL-GALSIIISAALAHIILRERLHIFGILGCILC  125 (209)
Q Consensus        61 ~~~~W~~G~~-l~~lG~~~~f~Al~fap~slV~PL-ga~~lv~~~ila~~~L~E~l~~~~~~G~~l~  125 (209)
                      +++.|..+.+ .++++..+...|+.-.|.++.-|+ .+++.+...+.+.++.||+++..++.|+.++
T Consensus        27 ~~~~~~~~~~~~~~~s~~~l~~al~~lp~~vaYavw~g~g~v~~~~~~~~~f~E~~s~~~~~gi~lI   93 (93)
T PF00893_consen   27 TQLIPTILAVVGYGLSFYFLSLALKKLPLSVAYAVWTGLGIVGVTLVGVFFFGESLSLSKWLGIGLI   93 (93)
T ss_dssp             -------HHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHH--------HHHHHHH
T ss_pred             cchhhHHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHhheeeC
Confidence            3455555554 577777888889999999999997 5699999999999999999999999999875

They confer resistance to a wide range of toxic compounds by removing them for the cells. The efflux is coupled to an influx of protons. An example is Escherichia coli mvrC P23895 from SWISSPROT which prevents the incorporation of methyl viologen into cells [] and is involved in ethidium bromide efflux [].; GO: 0016021 integral to membrane; PDB: 2I68_A.

>PF04142 Nuc_sug_transp: Nucleotide-sugar transporter; InterPro: IPR007271 This family of membrane proteins transport nucleotide sugars from the cytoplasm into golgi vesicles

Probab=97.20  E-value=0.00061  Score=59.40  Aligned_cols=73  Identities=19%  Similarity=0.272  Sum_probs=66.5

Q ss_pred             HHHHHHHHHHHHHHHHHhhccchhhhcchhhhHHHHHHHHHHHhhcccccccchhhhHheeceeeeEeecCCc
Q 028389           67 VGMITMVVGEIANFAAYAFAPAILVTPLGALSIIISAALAHIILRERLHIFGILGCILCVVGSTTIVLHAPAE  139 (209)
Q Consensus        67 ~G~~l~~lG~~~~f~Al~fap~slV~PLga~~lv~~~ila~~~L~E~l~~~~~~G~~l~i~G~~lvv~~a~~~  139 (209)
                      +=-+++.+...+.+.++...|++.-|=+...-++++++++.++||+|+++++|.+..+..+|++++-..+..+
T Consensus        22 vPA~lY~~qn~L~~~al~~ld~~t~qvl~q~kIl~TAl~s~~~L~r~ls~~qW~aL~lL~~Gv~lv~~~~~~~   94 (244)
T PF04142_consen   22 VPALLYAIQNNLQFVALSYLDPSTFQVLSQSKILFTALFSVLLLKRRLSRRQWLALFLLVAGVVLVQLSSSQS   94 (244)
T ss_pred             HHHHHHHHHHHHHHHHHHhCCHHHHHHHHhhHHHHHHHHHHHHHHcccchhhHHHHHHHHHHHheeecCCccc
Confidence            3347799999999999999999999999999999999999999999999999999999999999876665554

P78382 from SWISSPROT transports CMP-sialic acid, P78381 from SWISSPROT transports UDP-galactose and Q9Y2D2 from SWISSPROT transports UDP-GlcNAc. This family has some but not complete overlap with the UDP-galactose transporter family IPR004689 from INTERPRO.; GO: 0005351 sugar:hydrogen symporter activity, 0008643 carbohydrate transport, 0000139 Golgi membrane, 0016021 integral to membrane

>PRK11453 O-acetylserine/cysteine export protein; Provisional

Probab=97.19  E-value=0.0014  Score=57.87  Aligned_cols=113  Identities=24%  Similarity=0.271  Sum_probs=73.7

Q ss_pred             HHHHHHHHHHHHHHHHHHhhHHHhhcc---CcccC---CCCcccc---ch---hHHHHHHHHHHHHHHHHHHHHhh-ccc
Q 028389           22 ILALSSSIFIGSSFIVKKKGLKKAGAS---GVRAG---FGGYSYL---YE---PLWWVGMITMVVGEIANFAAYAF-APA   88 (209)
Q Consensus        22 ~LAl~ss~~i~~g~vlqK~~~~~~~~~---~~~a~---~~~~~~l---~~---~~W~~G~~l~~lG~~~~f~Al~f-ap~   88 (209)
                      .+++..+++.|..+...|....+.+..   ..|..   --...+.   |.   ..-..|+..........+.++.+ .|+
T Consensus         7 l~~l~~~~~Wg~~~~~~k~~~~~~~p~~~~~~R~~~a~~~l~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~a   86 (299)
T PRK11453          7 VLALLVVVVWGLNFVVIKVGLHNMPPLMLAGLRFMLVAFPAIFFVARPKVPLNLLLGYGLTISFGQFAFLFCAINFGMPA   86 (299)
T ss_pred             HHHHHHHHHHhhhHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHHHHHHHHhcCCH
Confidence            456778899999999999865432211   11210   0000000   11   11122332222333455667776 477


Q ss_pred             hhhhcchhhhHHHHHHHHHHHhhcccccccchhhhHheeceeeeEe
Q 028389           89 ILVTPLGALSIIISAALAHIILRERLHIFGILGCILCVVGSTTIVL  134 (209)
Q Consensus        89 slV~PLga~~lv~~~ila~~~L~E~l~~~~~~G~~l~i~G~~lvv~  134 (209)
                      ...+-+.+...++..+++++++|||++++++.|+++.++|+.++..
T Consensus        87 ~~a~~l~~~~pi~~~ll~~~~l~e~~~~~~~~~~~l~~~Gv~ll~~  132 (299)
T PRK11453         87 GLASLVLQAQAFFTIVLGAFTFGERLQGKQLAGIALAIFGVLVLIE  132 (299)
T ss_pred             HHHHHHHHhHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHhHHHhcc
Confidence            7888888899999999999999999999999999999999887753

>COG0697 RhaT Permeases of the drug/metabolite transporter (DMT) superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / General function prediction only]

Probab=97.14  E-value=0.0015  Score=55.21  Aligned_cols=117  Identities=23%  Similarity=0.219  Sum_probs=85.9

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHhhHHHhhccC-cc--------------cCCCC--ccccchhHHH--HHHHHHHHHHH
Q 028389           17 NIKGLILALSSSIFIGSSFIVKKKGLKKAGASG-VR--------------AGFGG--YSYLYEPLWW--VGMITMVVGEI   77 (209)
Q Consensus        17 ~~iGi~LAl~ss~~i~~g~vlqK~~~~~~~~~~-~~--------------a~~~~--~~~l~~~~W~--~G~~l~~lG~~   77 (209)
                      ...|..+++.++++.+...+++|+-. +.+... ..              ...+.  ....+...+.  .|+...+++..
T Consensus       152 ~~~g~~~~l~a~~~~a~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~i~~~  230 (292)
T COG0697         152 SLLGLLLALAAALLWALYTALVKRLS-RLGPVTLALLLQLLLALLLLLLFFLSGFGAPILSRAWLLLLYLGVFSTGLAYL  230 (292)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhc-CCChHHHHHHHHHHHHHHHHHHHHhccccccCCHHHHHHHHHHHHHHHHHHHH
Confidence            57999999999999999999999743 211100 00              00001  1111122222  34444456788


Q ss_pred             HHHHHHhhccchhhhcchhhhHHHHHHHHHHHhhcccccccchhhhHheeceeeeEe
Q 028389           78 ANFAAYAFAPAILVTPLGALSIIISAALAHIILRERLHIFGILGCILCVVGSTTIVL  134 (209)
Q Consensus        78 ~~f~Al~fap~slV~PLga~~lv~~~ila~~~L~E~l~~~~~~G~~l~i~G~~lvv~  134 (209)
                      ..+.++...|...++|+..+..+++.+++..+++|+++..++.|+++++.|..+...
T Consensus       231 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~l~~~e~~~~~~~~G~~li~~g~~l~~~  287 (292)
T COG0697         231 LWYYALRLLGASLVALLSLLEPVFAALLGVLLLGEPLSPAQLLGAALVVLGVLLASL  287 (292)
T ss_pred             HHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHHhc
Confidence            889999999999999999999999999999999999999999999999999876543

>TIGR00776 RhaT RhaT L-rhamnose-proton symporter family protein

Probab=97.09  E-value=0.00098  Score=59.02  Aligned_cols=75  Identities=16%  Similarity=0.345  Sum_probs=67.6

Q ss_pred             hhHHHHHHHH---HHHHHHHHHHHHhhccchhhhcchh-hhHHHHHHHHHHHhhccccccc----chhhhHheeceeeeE
Q 028389           62 EPLWWVGMIT---MVVGEIANFAAYAFAPAILVTPLGA-LSIIISAALAHIILRERLHIFG----ILGCILCVVGSTTIV  133 (209)
Q Consensus        62 ~~~W~~G~~l---~~lG~~~~f~Al~fap~slV~PLga-~~lv~~~ila~~~L~E~l~~~~----~~G~~l~i~G~~lvv  133 (209)
                      ...|..|++.   ...|++..+.|.....+++-.|+.. ++++++.+.+++++||+.++++    ..|++++++|+.++.
T Consensus        56 ~~~~~~g~l~G~~w~ig~~~~~~ai~~~gva~a~~i~~~~~~v~~~l~~~~~f~e~~t~~~~~~~~~g~~l~l~G~~l~~  135 (290)
T TIGR00776        56 LSIFLVGLLSGAFWALGQINQFKSMRYMGVSKTMPISTGFQLVGGTLFGVIVFGEWSTSIQTLLGLLALILIIIGVYLTS  135 (290)
T ss_pred             cHHHHHHHHHHHHHHhhhhhHHHHHHHHhHHHHhHHHHHHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHhHheEE
Confidence            3456668877   8999999999999999999999999 9999999999999999999999    999999999988875


Q ss_pred             eec
Q 028389          134 LHA  136 (209)
Q Consensus       134 ~~a  136 (209)
                      ...
T Consensus       136 ~~~  138 (290)
T TIGR00776       136 RSK  138 (290)
T ss_pred             ecc
Confidence            554

These proteins are members of the L-Rhamnose Symporter (RhaT) Family (TC 2.A.7). This family includes two characterized members, both of which function as L-rhamnose:H+ symporters and have 10 GES predicted transmembrane domains.

>TIGR00688 rarD rarD protein

Probab=97.03  E-value=0.00065  Score=58.28  Aligned_cols=62  Identities=16%  Similarity=0.208  Sum_probs=57.4

Q ss_pred             HHHHHHHHHHHHhhccchhhhcchhhhHHHHHHHHHHHhhcccccccchhhhHheeceeeeE
Q 028389           72 MVVGEIANFAAYAFAPAILVTPLGALSIIISAALAHIILRERLHIFGILGCILCVVGSTTIV  133 (209)
Q Consensus        72 ~~lG~~~~f~Al~fap~slV~PLga~~lv~~~ila~~~L~E~l~~~~~~G~~l~i~G~~lvv  133 (209)
                      +..+..+.+.|+...|++-.+-+...+.++.++++++++|||+++++|.|+.+...|+.+++
T Consensus        80 ~~~~~~~~~~a~~~~~~~~a~~l~~~~Pi~~~lla~~~l~Ek~~~~~~l~~~~~~~Gv~li~  141 (256)
T TIGR00688        80 IGFNWWLFIWAVNNGSSLEVSLGYLINPLVMVALGRVFLKERISRFQFIAVIIATLGVISNI  141 (256)
T ss_pred             HHHHHHHHHHHHHcchHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHH
Confidence            55777888999999999999999999999999999999999999999999999999988764

This uncharacterized protein is predicted to have many membrane-spanning domains.

>TIGR00776 RhaT RhaT L-rhamnose-proton symporter family protein

Probab=96.88  E-value=0.0032  Score=55.77  Aligned_cols=113  Identities=22%  Similarity=0.177  Sum_probs=83.8

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHhhHHHhhccCc---cc-----CC----CC----ccccchhHHH----HHHHHHHHHH
Q 028389           17 NIKGLILALSSSIFIGSSFIVKKKGLKKAGASGV---RA-----GF----GG----YSYLYEPLWW----VGMITMVVGE   76 (209)
Q Consensus        17 ~~iGi~LAl~ss~~i~~g~vlqK~~~~~~~~~~~---~a-----~~----~~----~~~l~~~~W~----~G~~l~~lG~   76 (209)
                      ...|+..++.|+++.+.-...-|+..  .+....   ..     +.    -.    ++. +++.+|    .|+. ..++.
T Consensus       150 ~~~Gi~~~l~sg~~y~~~~~~~~~~~--~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~Gi~-~~ia~  225 (290)
T TIGR00776       150 FKKGILLLLMSTIGYLVYVVVAKAFG--VDGLSVLLPQAIGMVIGGIIFNLGHILAKPL-KKYAILLNILPGLM-WGIGN  225 (290)
T ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHcC--CCcceehhHHHHHHHHHHHHHHHHHhcccch-HHHHHHHHHHHHHH-HHHHH
Confidence            45699999999999998888877531  111000   00     00    00    111 233444    4444 46778


Q ss_pred             HHHHHHHh-hccchhhhcchhhhHHHHHHHHHHHhhcccccccc----hhhhHheeceeeeE
Q 028389           77 IANFAAYA-FAPAILVTPLGALSIIISAALAHIILRERLHIFGI----LGCILCVVGSTTIV  133 (209)
Q Consensus        77 ~~~f~Al~-fap~slV~PLga~~lv~~~ila~~~L~E~l~~~~~----~G~~l~i~G~~lvv  133 (209)
                      .+.+.+.. ..+++.-.++..+..+.+.+.+.+++||+.+++++    .|+++++.|+.++.
T Consensus       226 ~~y~~~~~~~~~~~~~~~ls~~~pvia~~~~v~~l~E~~~~~~~~~~~iG~~lIi~~~~l~~  287 (290)
T TIGR00776       226 FFYLFSAQPKVGVATSFSLSQLGVIISTLGGILILGEKKTKREMIAISVGIILIIIAANILG  287 (290)
T ss_pred             HHHHHHcccccchhhHHHHHHHHHHHHHHHHHHHhccCCCcceeehhHHHHHHHHHHHHHHh
Confidence            88888888 99999999999999999999999999999999999    99999999988764

These proteins are members of the L-Rhamnose Symporter (RhaT) Family (TC 2.A.7). This family includes two characterized members, both of which function as L-rhamnose:H+ symporters and have 10 GES predicted transmembrane domains.

>COG0697 RhaT Permeases of the drug/metabolite transporter (DMT) superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / General function prediction only]

Probab=96.80  E-value=0.0024  Score=54.05  Aligned_cols=73  Identities=25%  Similarity=0.396  Sum_probs=63.3

Q ss_pred             HHHHHHHHHHHHHHHHHhhccchhhhcchhhhHHHHHHHHH-HHhhcccccccchhhhHheeceeeeEeecCCc
Q 028389           67 VGMITMVVGEIANFAAYAFAPAILVTPLGALSIIISAALAH-IILRERLHIFGILGCILCVVGSTTIVLHAPAE  139 (209)
Q Consensus        67 ~G~~l~~lG~~~~f~Al~fap~slV~PLga~~lv~~~ila~-~~L~E~l~~~~~~G~~l~i~G~~lvv~~a~~~  139 (209)
                      .|......+..+.+.++...|+...+++.+.+.++..+++. +++|||++++++.|..+...|+.++......+
T Consensus        75 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~p~~~~~~~~~~~~~e~~~~~~~~~~~~~~~Gv~lv~~~~~~~  148 (292)
T COG0697          75 LALLGLALPFLLLFLALKYTSASVASLIIGLLPLFTALLAVLLLLGERLSLLQILGILLALAGVLLILLGGGGG  148 (292)
T ss_pred             HHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHccCCCcHHHHHHHHHHHHhHHheecCCCcc
Confidence            45566778888999999999999999999999999999997 67799999999999999999988875555443

>TIGR00817 tpt Tpt phosphate/phosphoenolpyruvate translocator

Probab=96.71  E-value=0.003  Score=55.48  Aligned_cols=66  Identities=14%  Similarity=0.163  Sum_probs=59.7

Q ss_pred             HHHHHHHHHHHHHHHHHHhhccchhhhcchhhhHHHHHHHHHHHhhcccccccchhhhHheeceeee
Q 028389           66 WVGMITMVVGEIANFAAYAFAPAILVTPLGALSIIISAALAHIILRERLHIFGILGCILCVVGSTTI  132 (209)
Q Consensus        66 ~~G~~l~~lG~~~~f~Al~fap~slV~PLga~~lv~~~ila~~~L~E~l~~~~~~G~~l~i~G~~lv  132 (209)
                      ..|+. +++....+..++.+.+++..+=+-+...+++++++.+++|||++++.+.|+.+++.|+.+.
T Consensus        70 ~~g~~-~~~~~~~~~~~l~~~s~s~~~li~~~~Pv~~~ll~~~~~~e~~~~~~~~~l~l~~~Gv~l~  135 (302)
T TIGR00817        70 PVAIV-HTIGHVTSNVSLSKVAVSFTHTIKAMEPFFSVVLSAFFLGQEFPSTLWLSLLPIVGGVALA  135 (302)
T ss_pred             HHHHH-HHHHHHHHHHHHHhccHHHHHHHHhcchHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHhhh
Confidence            35555 4677788999999999999999999999999999999999999999999999999999754

specificities overlap.

>PF08449 UAA: UAA transporter family; InterPro: IPR013657 This family includes transporters with a specificity for UDP-N-acetylglucosamine []

Probab=96.58  E-value=0.0056  Score=54.20  Aligned_cols=77  Identities=14%  Similarity=0.143  Sum_probs=66.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHhhccchhhhcchhhhHHHHHHHHHHHhhcccccccchhhhHheeceeeeEeecCCccc
Q 028389           65 WWVGMITMVVGEIANFAAYAFAPAILVTPLGALSIIISAALAHIILRERLHIFGILGCILCVVGSTTIVLHAPAERE  141 (209)
Q Consensus        65 W~~G~~l~~lG~~~~f~Al~fap~slV~PLga~~lv~~~ila~~~L~E~l~~~~~~G~~l~i~G~~lvv~~a~~~~~  141 (209)
                      |+.=-.+..++..++-.|+.+.|...-+=+-+..++.+++++.+++|+|.+++++.++.++++|+.+......++++
T Consensus        67 ~~~~~~~~~~~~~~~~~al~~i~~p~~~~~ks~~~i~vmi~~~l~~~k~y~~~~~~~v~li~~Gv~~~~~~~~~~~~  143 (303)
T PF08449_consen   67 YAILSFLFFLASVLSNAALKYISYPTQIVFKSSKPIPVMILGVLILGKRYSRRQYLSVLLITIGVAIFTLSDSSSSS  143 (303)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhCChHHHHHHhhhHHHHHHHHHHHhcCccccHHHHHHHHHHHhhHheeeeccccccc
Confidence            33333556688889999999999999999999999999999999999999999999999999999998887655443

; GO: 0055085 transmembrane transport

>PRK10650 multidrug efflux system protein MdtI; Provisional

Probab=96.51  E-value=0.02  Score=44.34  Aligned_cols=73  Identities=18%  Similarity=0.179  Sum_probs=55.6

Q ss_pred             cchhHHHHHHHH-HHHHHHHHHHHHhhccchhhhcch-hhhHHHHHHHHHHHhhcccccccchhhhHheeceeee
Q 028389           60 LYEPLWWVGMIT-MVVGEIANFAAYAFAPAILVTPLG-ALSIIISAALAHIILRERLHIFGILGCILCVVGSTTI  132 (209)
Q Consensus        60 l~~~~W~~G~~l-~~lG~~~~f~Al~fap~slV~PLg-a~~lv~~~ila~~~L~E~l~~~~~~G~~l~i~G~~lv  132 (209)
                      +++|.|...+.. +++....--.|+...|..+.-|.= +++.+..++.+.++.||+++..++.|+.+++.|++.+
T Consensus        32 f~~~~~~~~~~~~~~~sf~~Ls~al~~lpvgvAYAvW~GiG~v~~~~ig~~~f~e~~~~~~~~gi~lIi~GVi~l  106 (109)
T PRK10650         32 FRRKIYGILSLAAVLAAFSALSQAVKGIDLSVAYALWGGFGIAATLAAGWILFGQRLNRKGWIGLVLLLAGMVMI  106 (109)
T ss_pred             CcchHHHHHHHHHHHHHHHHHHHHHhhCchHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHh
Confidence            345666555433 344444555666677888877764 5888999999999999999999999999999998764

>PRK15430 putative chloramphenical resistance permease RarD; Provisional

Probab=96.38  E-value=0.0023  Score=56.38  Aligned_cols=63  Identities=13%  Similarity=-0.032  Sum_probs=57.8

Q ss_pred             HHHHHHHHHHHhhccchhhhcchhhhHHHHHHHHHHHhhcccccccchhhhHheeceeeeEee
Q 028389           73 VVGEIANFAAYAFAPAILVTPLGALSIIISAALAHIILRERLHIFGILGCILCVVGSTTIVLH  135 (209)
Q Consensus        73 ~lG~~~~f~Al~fap~slV~PLga~~lv~~~ila~~~L~E~l~~~~~~G~~l~i~G~~lvv~~  135 (209)
                      .++..+.+.++...|++.++++.-+..+++.+++.++++|+++...+.|+++++.|+.++...
T Consensus       224 ~i~~~~~~~a~~~~~a~~~s~~~~l~Pv~a~~~g~l~l~E~~~~~~~~G~~lI~~~~~v~~~~  286 (296)
T PRK15430        224 TVPLLCFTAAATRLRLSTLGFFQYIGPTLMFLLAVTFYGEKPGADKMVTFAFIWVALAIFVMD  286 (296)
T ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHH
Confidence            367889999999999999999999999999999999999999999999999999988766443

>PRK11431 multidrug efflux system protein; Provisional

Probab=96.37  E-value=0.0065  Score=46.75  Aligned_cols=72  Identities=15%  Similarity=0.013  Sum_probs=56.1

Q ss_pred             chhHHHHHH-HHHHHHHHHHHHHHhhccchhhhcch-hhhHHHHHHHHHHHhhcccccccchhhhHheeceeee
Q 028389           61 YEPLWWVGM-ITMVVGEIANFAAYAFAPAILVTPLG-ALSIIISAALAHIILRERLHIFGILGCILCVVGSTTI  132 (209)
Q Consensus        61 ~~~~W~~G~-~l~~lG~~~~f~Al~fap~slV~PLg-a~~lv~~~ila~~~L~E~l~~~~~~G~~l~i~G~~lv  132 (209)
                      +++.|+..+ ..+.+....--.|+...|..+.-++= +++.+.+++.+.++.||++++.++.|+.+++.|++.+
T Consensus        27 ~~~~~~~~~i~~~~~sf~~Ls~al~~ip~gvaYAvW~GiG~v~~~lig~~~f~e~~~~~~~~gi~lIi~GVv~l  100 (105)
T PRK11431         27 SRLTPSIITVTAMIVSMALLAWAMKSLPVGTAYAVWTGIGAVGAAITGIVLLGESASPARLLSLALIVAGIIGL  100 (105)
T ss_pred             ccHHHHHHHHHHHHHHHHHHHHHHhhCCcHhHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHhh
Confidence            345555544 33455555555667777888877764 5899999999999999999999999999999998876

>PTZ00343 triose or hexose phosphate/phosphate translocator; Provisional

Probab=96.31  E-value=0.0052  Score=55.89  Aligned_cols=59  Identities=15%  Similarity=0.215  Sum_probs=54.9

Q ss_pred             HHHHHHHHHhhccchhhhcchhhhHHHHHHHHHHHhhcccccccchhhhHheeceeeeE
Q 028389           75 GEIANFAAYAFAPAILVTPLGALSIIISAALAHIILRERLHIFGILGCILCVVGSTTIV  133 (209)
Q Consensus        75 G~~~~f~Al~fap~slV~PLga~~lv~~~ila~~~L~E~l~~~~~~G~~l~i~G~~lvv  133 (209)
                      +..+...|+.+.+++..+=+-+.+.+++++++++++|||++++.+.|++++++|+.+..
T Consensus       127 ~~~~~~~sl~~~svs~~~iika~~Pvft~lls~~~l~ek~s~~~~l~l~l~v~Gv~l~~  185 (350)
T PTZ00343        127 VHFGAVISMGLGAVSFTHVVKAAEPVFTALLSILFLKQFLNLYAYLSLIPIVGGVALAS  185 (350)
T ss_pred             HHHHHHHHHhhccHHHHHHHHHhhHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHhee
Confidence            45566699999999999999999999999999999999999999999999999999875

>PF06800 Sugar_transport: Sugar transport protein; InterPro: IPR010651 This is a family of bacterial sugar transporters approximately 300 residues long

Probab=96.30  E-value=0.009  Score=53.19  Aligned_cols=80  Identities=13%  Similarity=0.277  Sum_probs=67.9

Q ss_pred             hHHHHHHHH---HHHHHHHHHHHHhhccchhhhcch-hhhHHHHHHHHHHHhhccccccc----chhhhHheeceeeeEe
Q 028389           63 PLWWVGMIT---MVVGEIANFAAYAFAPAILVTPLG-ALSIIISAALAHIILRERLHIFG----ILGCILCVVGSTTIVL  134 (209)
Q Consensus        63 ~~W~~G~~l---~~lG~~~~f~Al~fap~slV~PLg-a~~lv~~~ila~~~L~E~l~~~~----~~G~~l~i~G~~lvv~  134 (209)
                      ..|+.+++.   -.+|++++|.|+.....|.-.|++ +..++.|++.+.++++|--+..+    ..+++++++|+.+...
T Consensus        43 ~~~~~~~lsG~~W~iGq~~qf~s~~~~GVS~tmPiStg~QLvg~sl~gv~~fgEW~~~~~~~~G~~Al~liiiGv~lts~  122 (269)
T PF06800_consen   43 TSFIVAFLSGAFWAIGQIGQFKSFKKIGVSKTMPISTGLQLVGTSLIGVLFFGEWTTTTQKIIGFLALVLIIIGVILTSY  122 (269)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhcceeeeccchhHHHHHHHHHHHhhcCCCCCcchHHHHHHHHHHHHHHHHHhcc
Confidence            567777754   679999999999999999999999 89999999999999999888766    4588999999988776


Q ss_pred             ecCCcccc
Q 028389          135 HAPAEREI  142 (209)
Q Consensus       135 ~a~~~~~~  142 (209)
                      ..+++++.
T Consensus       123 ~~~~~~~~  130 (269)
T PF06800_consen  123 QDKKSDKS  130 (269)
T ss_pred             cccccccc
Confidence            66665543

Members include glucose uptake proteins [], ribose transport proteins, and several putative and hypothetical membrane proteins probably involved in sugar transport across bacterial membranes.; GO: 0015144 carbohydrate transmembrane transporter activity, 0034219 carbohydrate transmembrane transport, 0016021 integral to membrane

>KOG4510 consensus Permease of the drug/metabolite transporter (DMT) superfamily [General function prediction only]

Probab=96.25  E-value=0.0028  Score=56.80  Aligned_cols=130  Identities=22%  Similarity=0.336  Sum_probs=77.0

Q ss_pred             CCCCCCccccCC----CCchhHHHHHHHHHHHHHHHHHHHHHhhHHHhhcc--CcccCCC------Cccccchh------
Q 028389            2 ADPNGHSWRDGM----SSDNIKGLILALSSSIFIGSSFIVKKKGLKKAGAS--GVRAGFG------GYSYLYEP------   63 (209)
Q Consensus         2 ~~~~~~~~~~~~----~~~~~iGi~LAl~ss~~i~~g~vlqK~~~~~~~~~--~~~a~~~------~~~~l~~~------   63 (209)
                      +||++.-|+...    .....+|+.+..+| .+.+.+.++-++.+....+.  ..|--..      ..-|.+.|      
T Consensus        17 ~d~~~r~~e~~~qri~~d~p~~gl~l~~vs-~ff~~~~vv~t~~~e~~p~e~a~~r~l~~mlit~pcliy~~~~v~gp~g   95 (346)
T KOG4510|consen   17 PDPAPRWLERTLQRISKDKPNLGLLLLTVS-YFFNSCMVVSTKVLENDPMELASFRLLVRMLITYPCLIYYMQPVIGPEG   95 (346)
T ss_pred             cCCCccHHHHHhhHhhcCCCccCceehhhH-HHHhhHHHhhhhhhccChhHhhhhhhhhehhhhheEEEEEeeeeecCCC
Confidence            466665443222    12356899999999 77777777777754332211  1110000      00111111      


Q ss_pred             --HH--HHHHHHHHHHHHHHHHHHhhccchhhhcchhhhHHHHHHHHHHHhhcccccccchhhhHheeceeeeE
Q 028389           64 --LW--WVGMITMVVGEIANFAAYAFAPAILVTPLGALSIIISAALAHIILRERLHIFGILGCILCVVGSTTIV  133 (209)
Q Consensus        64 --~W--~~G~~l~~lG~~~~f~Al~fap~slV~PLga~~lv~~~ila~~~L~E~l~~~~~~G~~l~i~G~~lvv  133 (209)
                        .|  .-|+.-. .|..+.+.||.+.|.+=-.=+.=.+.+++.++|..+||||.++.|-+|+...+.|+++++
T Consensus        96 ~R~~LiLRg~mG~-tgvmlmyya~~~mslaDA~vItFssPvft~ifaw~~LkE~~t~~eaL~s~itl~GVVLIv  168 (346)
T KOG4510|consen   96 KRKWLILRGFMGF-TGVMLMYYALMYMSLADAVVITFSSPVFTIIFAWAFLKEPFTKFEALGSLITLLGVVLIV  168 (346)
T ss_pred             cEEEEEeehhhhh-hHHHHHHHHHhhcchhheEEEEecChHHHHHHHHHHHcCCCcHHHHHHHHHhhheEEEEe
Confidence              12  2232211 344455566655444332333446789999999999999999999999999999999885

>PF06027 DUF914: Eukaryotic protein of unknown function (DUF914); InterPro: IPR009262 This family consists of several hypothetical proteins of unknown function

Probab=96.19  E-value=0.013  Score=53.52  Aligned_cols=128  Identities=22%  Similarity=0.164  Sum_probs=83.4

Q ss_pred             CCCCchhHHHHHHHHHHHHHHHHHHHHHhhHHHhhccCccc---------------CCCCccccch--hHHHHHHHHHHH
Q 028389           12 GMSSDNIKGLILALSSSIFIGSSFIVKKKGLKKAGASGVRA---------------GFGGYSYLYE--PLWWVGMITMVV   74 (209)
Q Consensus        12 ~~~~~~~iGi~LAl~ss~~i~~g~vlqK~~~~~~~~~~~~a---------------~~~~~~~l~~--~~W~~G~~l~~l   74 (209)
                      ++.++..+|=.+++.|+++.|++.++|++-..+.+..+.-.               .-| ++-+++  +.|-.+. +++.
T Consensus       161 ~~~~~~i~GDll~l~~a~lya~~nV~~E~~v~~~~~~~~lg~~Glfg~ii~~iq~~ile-~~~i~~~~w~~~~~~-~~v~  238 (334)
T PF06027_consen  161 SSGSNPILGDLLALLGAILYAVSNVLEEKLVKKAPRVEFLGMLGLFGFIISGIQLAILE-RSGIESIHWTSQVIG-LLVG  238 (334)
T ss_pred             CCCCccchhHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHHHHhee-hhhhhccCCChhhHH-HHHH
Confidence            45678899999999999999999999999665433211000               000 111111  2222222 2333


Q ss_pred             HHHHHHHHHhhccchhh------hcch-hhhHHHHHHHHHHHhhcccccccchhhhHheeceeeeEeecCCccc
Q 028389           75 GEIANFAAYAFAPAILV------TPLG-ALSIIISAALAHIILRERLHIFGILGCILCVVGSTTIVLHAPAERE  141 (209)
Q Consensus        75 G~~~~f~Al~fap~slV------~PLg-a~~lv~~~ila~~~L~E~l~~~~~~G~~l~i~G~~lvv~~a~~~~~  141 (209)
                      ..++.|.-|.+.|..+-      .-++ -.+-+++.++..++.|+++++.-++|-+++++|.++.....+++++
T Consensus       239 ~~~~lf~~y~l~p~~l~~ssAt~~nLsLLTsd~~ali~~i~~f~~~~~~ly~~af~lIiiG~vvy~~~~~~~~~  312 (334)
T PF06027_consen  239 YALCLFLFYSLVPIVLRMSSATFFNLSLLTSDFYALIIDIFFFGYKFSWLYILAFALIIIGFVVYNLAESPEEE  312 (334)
T ss_pred             HHHHHHHHHHHHHHHHHhCccceeehHHHHhhHHHHHHHHHhcCccccHHHHHHHHHHHHHhheEEccCCcccc
Confidence            44466777777776442      2223 3457788899999999999999999999999998887665555443

Some of the sequences in this family are annotated as putative membrane proteins.

>PLN00411 nodulin MtN21 family protein; Provisional

Probab=96.03  E-value=0.015  Score=53.40  Aligned_cols=60  Identities=18%  Similarity=0.436  Sum_probs=54.2

Q ss_pred             HHHHHHHHHhhccchhhhcchhhhHHHHHHHHHHH------hhcccccccchhhhHheeceeeeEe
Q 028389           75 GEIANFAAYAFAPAILVTPLGALSIIISAALAHII------LRERLHIFGILGCILCVVGSTTIVL  134 (209)
Q Consensus        75 G~~~~f~Al~fap~slV~PLga~~lv~~~ila~~~------L~E~l~~~~~~G~~l~i~G~~lvv~  134 (209)
                      .....+.++.+.|++..+=+.+...++++++++++      +|||++++++.|++++++|+.++..
T Consensus        91 ~~~~~~~gl~~tsa~~asll~~~~P~~~~lla~~~~~e~~~~~er~~~~~~~G~~l~~~Gv~ll~~  156 (358)
T PLN00411         91 YVITGYIGIEYSNPTLASAISNITPALTFILAIIFRMEKVSFKERSSVAKVMGTILSLIGALVVIF  156 (358)
T ss_pred             HHHHHHHHHhhccHHHHHHHHHhhHHHHHHHHHHHHhchhhhcccccHHHHHHHHHHHHHHHHHHH
Confidence            33467889999999999999999999999999999      6999999999999999999987654

>PRK11272 putative DMT superfamily transporter inner membrane protein; Provisional

Probab=95.99  E-value=0.01  Score=52.06  Aligned_cols=66  Identities=15%  Similarity=0.218  Sum_probs=54.2

Q ss_pred             HHHHHHHHHHHHHHHHH-hhccchhhhcchhhhHHHHHHHHHHHhhcccccccchhhhHheeceeeeE
Q 028389           67 VGMITMVVGEIANFAAY-AFAPAILVTPLGALSIIISAALAHIILRERLHIFGILGCILCVVGSTTIV  133 (209)
Q Consensus        67 ~G~~l~~lG~~~~f~Al-~fap~slV~PLga~~lv~~~ila~~~L~E~l~~~~~~G~~l~i~G~~lvv  133 (209)
                      .|......+..+.+.+. ...|+...+-+-....++..+++++ +|||++++++.|+.+.+.|+.++.
T Consensus        74 ~g~~~~~~~~~~~~~~~~~~~~a~~a~~l~~~~Pl~~~lla~~-~~e~~~~~~~~~~~la~~Gv~ll~  140 (292)
T PRK11272         74 IGLLLLAVGNGMVTVAEHQNVPSGIAAVVVATVPLFTLCFSRL-FGIRTRKLEWLGIAIGLAGIVLLN  140 (292)
T ss_pred             HHHHHHHHHHHHHHHHHHccCcHHHHHHHHHHHHHHHHHHHHH-hcccCchhHHHHHHHHHHhHHHHh
Confidence            44444445566667777 8888888888999999999999975 799999999999999999988764

>TIGR00817 tpt Tpt phosphate/phosphoenolpyruvate translocator

Probab=95.91  E-value=0.0083  Score=52.72  Aligned_cols=116  Identities=13%  Similarity=0.176  Sum_probs=76.9

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHhhHHHhhccCccc-----------------CCCCcccc----ch--------hHHHH
Q 028389           17 NIKGLILALSSSIFIGSSFIVKKKGLKKAGASGVRA-----------------GFGGYSYL----YE--------PLWWV   67 (209)
Q Consensus        17 ~~iGi~LAl~ss~~i~~g~vlqK~~~~~~~~~~~~a-----------------~~~~~~~l----~~--------~~W~~   67 (209)
                      ..+|..+++.++++.+...++.||-..+.+.+..+.                 ..+..+..    .+        ..|..
T Consensus       143 ~~~G~~~~l~a~~~~a~~~v~~k~~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  222 (302)
T TIGR00817       143 NWAGFLSAMISNITFVSRNIFSKKAMTIKSLDKTNLYAYISIMSLFLLSPPAFITEGPPFLPHGFMQAISGVNVTKIYTV  222 (302)
T ss_pred             cHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCcccHHHHHHHHHHHHHHHHHHHHcchHHHHHHHHHhhcccCchHHHHH
Confidence            467999999999999999999888543111110000                 00110000    00        11211


Q ss_pred             HHH----HHHHHHHHHHHHHhhccchhhhcchhhhHHHHHHHHHHHhhcccccccchhhhHheeceeee
Q 028389           68 GMI----TMVVGEIANFAAYAFAPAILVTPLGALSIIISAALAHIILRERLHIFGILGCILCVVGSTTI  132 (209)
Q Consensus        68 G~~----l~~lG~~~~f~Al~fap~slV~PLga~~lv~~~ila~~~L~E~l~~~~~~G~~l~i~G~~lv  132 (209)
                      +..    .+.......+.+....+++..+-.+.+..++..+++.++++|+++..++.|.++++.|..+.
T Consensus       223 ~~~~~~~~~~~~~~~~~~~l~~~sa~t~sv~~~l~pv~~~~~~~~~lge~lt~~~~~G~~lil~Gv~l~  291 (302)
T TIGR00817       223 SLVAAMGFFHFYQQVAFMLLGRVSPLTHSVGNCMKRVVVIVVSILFFGTKISPQQVFGTGIAIAGVFLY  291 (302)
T ss_pred             HHHHHHHHHHHHHHHHHHHHccCCchHHHHHhhhhhhheeeeehhhcCCCCchhHHHHHHHHHHHHHHH
Confidence            211    11122234456777888888888899999999999999999999999999999999998764

specificities overlap.

>PF03151 TPT: Triose-phosphate Transporter family; InterPro: IPR004853 This family consists entirely of aligned regions from Drosophila melanogaster proteins

Probab=95.41  E-value=0.069  Score=41.70  Aligned_cols=57  Identities=21%  Similarity=0.370  Sum_probs=47.9

Q ss_pred             HHHHHHHHHhhccchhhhcchhhhHHHHHHHHHHHhhcccccccchhhhHheeceee
Q 028389           75 GEIANFAAYAFAPAILVTPLGALSIIISAALAHIILRERLHIFGILGCILCVVGSTT  131 (209)
Q Consensus        75 G~~~~f~Al~fap~slV~PLga~~lv~~~ila~~~L~E~l~~~~~~G~~l~i~G~~l  131 (209)
                      -+..++.......+..-+=++.+--+.+.+++..+.+|+++.+++.|+.+++.|+..
T Consensus        94 ~n~~~f~~i~~tS~lt~~v~~~~K~~~~i~~s~~~f~~~~t~~~~~G~~l~~~G~~~  150 (153)
T PF03151_consen   94 YNLSSFLLIKLTSPLTYSVLGNVKRILVILLSVIFFGEPITPLQIIGIVLALVGVLL  150 (153)
T ss_pred             HHHHHHHHhhhcChhHHHHHHHHHHHHHHHHHhhhcCCcCCHHHHHHHHHHHHHHhe
Confidence            334556666667777777788899999999999999999999999999999999764

O49724 from SWISSPROT contains three repeats of this region. In other proteins, the aligned region is located towards the C terminus. The function of the aligned region is unknown.

>COG2076 EmrE Membrane transporters of cations and cationic drugs [Inorganic ion transport and metabolism]

Probab=95.38  E-value=0.022  Score=44.14  Aligned_cols=71  Identities=15%  Similarity=0.130  Sum_probs=52.7

Q ss_pred             hhHHHHHHH-HHHHHHHHHHHHHhhccchhhhcc-hhhhHHHHHHHHHHHhhcccccccchhhhHheeceeee
Q 028389           62 EPLWWVGMI-TMVVGEIANFAAYAFAPAILVTPL-GALSIIISAALAHIILRERLHIFGILGCILCVVGSTTI  132 (209)
Q Consensus        62 ~~~W~~G~~-l~~lG~~~~f~Al~fap~slV~PL-ga~~lv~~~ila~~~L~E~l~~~~~~G~~l~i~G~~lv  132 (209)
                      |+.|.+.+. .+++...+--.|+.-.|..+--++ ++++.+..++.+.+++||+++..++.|..+++.|++.+
T Consensus        29 ~~~~~il~~v~~~~sf~~Ls~alk~ipvgvAYAiW~GiG~v~~~l~g~~~f~E~l~~~~~~gl~LiiaGvi~L  101 (106)
T COG2076          29 RLWPSILTIVGYGLSFYLLSLALKTIPLGVAYAIWTGIGIVGTALVGVLLFGESLSLIKLLGLALILAGVIGL  101 (106)
T ss_pred             ccchHHHHHHHHHHHHHHHHHHHhhCchHHHHHHHHHHHHHHHHHHHHHhcCCcCCHHHHHHHHHHHHHHHHh
Confidence            445555443 344444444455666677766554 67889999999999999999999999999999998765

>TIGR00803 nst UDP-galactose transporter

Probab=94.60  E-value=0.11  Score=43.64  Aligned_cols=118  Identities=21%  Similarity=0.242  Sum_probs=83.6

Q ss_pred             CCchhHHHHHHHHHHHHHHHHHHHHHhhHHHhhcc-Ccc-------------------cCC--CCcccc--chhHHHHHH
Q 028389           14 SSDNIKGLILALSSSIFIGSSFIVKKKGLKKAGAS-GVR-------------------AGF--GGYSYL--YEPLWWVGM   69 (209)
Q Consensus        14 ~~~~~iGi~LAl~ss~~i~~g~vlqK~~~~~~~~~-~~~-------------------a~~--~~~~~l--~~~~W~~G~   69 (209)
                      .++...|+...+.++++-+..-+.|+|+.++.+.. ..+                   +++  ...+.+  ..+.+|.=.
T Consensus        80 ~g~~~~g~~~~l~a~~~~~~~~~y~e~~~k~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  159 (222)
T TIGR00803        80 FGNPVVGLSAVLSALLSSGFAGVYFEKILKDGDTMFWSRNLQLPLFGLFSTFSVLLWSDGTLISNFGFFIGYPTAVWIVG  159 (222)
T ss_pred             cccHHHHHHHHHHHHHHHhhhHHHHHHcccCCCCchHHHHHHHHHHHHHHHHHHHhhcccchhhccCcccCCchHHHHHH
Confidence            35667888887788888888889998875432110 000                   000  011111  123334444


Q ss_pred             HHHHHHHHHHHHHHhhccchhhhcchhhhHHHHHHHHHHHhhcccccccchhhhHheeceee
Q 028389           70 ITMVVGEIANFAAYAFAPAILVTPLGALSIIISAALAHIILRERLHIFGILGCILCVVGSTT  131 (209)
Q Consensus        70 ~l~~lG~~~~f~Al~fap~slV~PLga~~lv~~~ila~~~L~E~l~~~~~~G~~l~i~G~~l  131 (209)
                      ++...|..+-...+.+++.....=..++..+.+.+++.++.+|+++...+.|+.++..|..+
T Consensus       160 ~~~a~~~~~v~~vlk~~~~~~~~~~~~~~~~~s~lls~~~f~~~ls~~~~~g~~lV~~~~~l  221 (222)
T TIGR00803       160 LLNVGGGLCIGGVVRYADNTTKSFVTALSIILSTLASVRLFDAKISSTFYLGAILVFLATFL  221 (222)
T ss_pred             HHHHhcCceeeehhHHhHHHHHHHHHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHeeeEe
Confidence            55667777777888888989999999999999999999999999999999999999998653

NSTs generally appear to function by antiport mechanisms, exchanging a nucleotide-sugar for a nucleotide. Thus, CMP-sialic acid is exchanged for CMP; GDP-mannose is preferentially exchanged for GMP, and UDP-galactose and UDP-N-acetylglucosamine are exchanged for UMP (or possibly UDP). Other nucleotide sugars (e.g., GDP-fucose, UDP-xylose, UDP-glucose, UDP-N-acetylgalactosamine, etc.) may also be transported in exchange for various nucleotides, but their transporters have not been molecularly characterized. Each compound appears to be translocated by its own transport protein. Transport allows the compound, synthesized in the cytoplasm, to be exported to the lumen of the Golgi apparatus or the endoplasmic reticulum where it is used for the synthesis of glycoproteins and glycolipids.

>COG5006 rhtA Threonine/homoserine efflux transporter [Amino acid transport and metabolism]

Probab=94.57  E-value=0.27  Score=43.91  Aligned_cols=121  Identities=20%  Similarity=0.180  Sum_probs=87.5

Q ss_pred             chhHHHHHHHHHHHHHHHHHHHHHhhHHHhhccCcc-----------------cCCCCccccchhH-HHHHHHHHHH---
Q 028389           16 DNIKGLILALSSSIFIGSSFIVKKKGLKKAGASGVR-----------------AGFGGYSYLYEPL-WWVGMITMVV---   74 (209)
Q Consensus        16 ~~~iGi~LAl~ss~~i~~g~vlqK~~~~~~~~~~~~-----------------a~~~~~~~l~~~~-W~~G~~l~~l---   74 (209)
                      -..+|+.+|+.+..|.+.=.+.-||.-.. + ++.+                 ..+.+ +-+.+|. -..++..-++   
T Consensus       145 lDp~Gv~~Al~AG~~Wa~YIv~G~r~g~~-~-~g~~g~a~gm~vAaviv~Pig~~~ag-~~l~~p~ll~laLgvavlSSa  221 (292)
T COG5006         145 LDPVGVALALGAGACWALYIVLGQRAGRA-E-HGTAGVAVGMLVAALIVLPIGAAQAG-PALFSPSLLPLALGVAVLSSA  221 (292)
T ss_pred             CCHHHHHHHHHHhHHHHHHHHHcchhccc-C-CCchHHHHHHHHHHHHHhhhhhhhcc-hhhcChHHHHHHHHHHHHhcc
Confidence            34789999999999998777777763321 1 1111                 01122 3334443 3344443333   


Q ss_pred             -HHHHHHHHHhhccchhhhcchhhhHHHHHHHHHHHhhcccccccchhhhHheeceeeeEeecCCc
Q 028389           75 -GEIANFAAYAFAPAILVTPLGALSIIISAALAHIILRERLHIFGILGCILCVVGSTTIVLHAPAE  139 (209)
Q Consensus        75 -G~~~~f~Al~fap~slV~PLga~~lv~~~ila~~~L~E~l~~~~~~G~~l~i~G~~lvv~~a~~~  139 (209)
                       =..+..+|+.-.|...-.-|-++...+.++....+|+|+++..+|.|+++++.++.-..+...++
T Consensus       222 lPYsLEmiAL~rlp~~~F~~LlSLePa~aAl~G~i~L~e~ls~~qwlaI~~ViaAsaG~~lt~~~~  287 (292)
T COG5006         222 LPYSLEMIALRRLPARTFGTLLSLEPALAALSGLIFLGETLTLIQWLAIAAVIAASAGSTLTARKP  287 (292)
T ss_pred             cchHHHHHHHhhCChhHHHHHHHhhHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhccccccCCC
Confidence             34578899999999999999999999999999999999999999999999999988665555544

>KOG2765 consensus Predicted membrane protein [Function unknown]

Probab=94.47  E-value=0.14  Score=47.72  Aligned_cols=74  Identities=22%  Similarity=0.281  Sum_probs=62.3

Q ss_pred             HHHHHHHHHHHHHH---HHHhhccchhhhcchhhhHHHHHHHHHHHhhcccccccchhhhHheeceeeeEeecCCcc
Q 028389           67 VGMITMVVGEIANF---AAYAFAPAILVTPLGALSIIISAALAHIILRERLHIFGILGCILCVVGSTTIVLHAPAER  140 (209)
Q Consensus        67 ~G~~l~~lG~~~~f---~Al~fap~slV~PLga~~lv~~~ila~~~L~E~l~~~~~~G~~l~i~G~~lvv~~a~~~~  140 (209)
                      .++.+..+-..+|+   +|++|..++-.+=+.+.|=+++..++..+.+||+|....+++++++.|++++.....++.
T Consensus       161 ~sl~fc~lWF~anl~~naALa~TsVAS~TilSStSs~FtL~la~if~~e~ft~sKllav~~si~GViiVt~~~s~~~  237 (416)
T KOG2765|consen  161 LSLFFCPLWFLANLTSNAALAFTSVASTTILSSTSSFFTLFLAAIFPVERFTLSKLLAVFVSIAGVIIVTMGDSKQN  237 (416)
T ss_pred             HHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhcchHHHHHHHHHcCcchhhHHHHHHHHHhhccEEEEEecccccc
Confidence            44444445555555   589999999999999999999999999999999999999999999999999988866553

>PF06800 Sugar_transport: Sugar transport protein; InterPro: IPR010651 This is a family of bacterial sugar transporters approximately 300 residues long

Probab=94.10  E-value=0.15  Score=45.39  Aligned_cols=118  Identities=19%  Similarity=0.187  Sum_probs=77.9

Q ss_pred             CCchhHHHHHHHHHHHHHHHHHHHHHhhHHHhhcc-Cccc-----------CCCCccccchhHHH--HHHHHHHHHHHHH
Q 028389           14 SSDNIKGLILALSSSIFIGSSFIVKKKGLKKAGAS-GVRA-----------GFGGYSYLYEPLWW--VGMITMVVGEIAN   79 (209)
Q Consensus        14 ~~~~~iGi~LAl~ss~~i~~g~vlqK~~~~~~~~~-~~~a-----------~~~~~~~l~~~~W~--~G~~l~~lG~~~~   79 (209)
                      .++.--|+...++|++.+-.=..+.|.......+- -|.+           --..+++.++..|.  .+=++..+|+++.
T Consensus       133 ~~~~~kgi~~Ll~stigy~~Y~~~~~~~~~~~~~~~lPqaiGm~i~a~i~~~~~~~~~~~k~~~~nil~G~~w~ignl~~  212 (269)
T PF06800_consen  133 KSNMKKGILALLISTIGYWIYSVIPKAFHVSGWSAFLPQAIGMLIGAFIFNLFSKKPFFEKKSWKNILTGLIWGIGNLFY  212 (269)
T ss_pred             ccchhhHHHHHHHHHHHHHHHHHHHHhcCCChhHhHHHHHHHHHHHHHHHhhcccccccccchHHhhHHHHHHHHHHHHH
Confidence            45566677778888777654444444432211000 0000           00122333344443  2224566888888


Q ss_pred             HHHHhhccchhhhcchhhhHHHHHHHHHHHhhccccccc----chhhhHheeceee
Q 028389           80 FAAYAFAPAILVTPLGALSIIISAALAHIILRERLHIFG----ILGCILCVVGSTT  131 (209)
Q Consensus        80 f~Al~fap~slV~PLga~~lv~~~ila~~~L~E~l~~~~----~~G~~l~i~G~~l  131 (209)
                      +.|-.-.-+..=-|++..+++++.+-+-+++||+=++++    ..|+++++.|+++
T Consensus       213 ~is~~~~G~a~af~lSQ~~vvIStlgGI~il~E~Kt~ke~~~~~~G~~Liv~G~il  268 (269)
T PF06800_consen  213 LISAQKNGVATAFTLSQLGVVISTLGGIFILKEKKTKKEMIYTLIGLILIVIGAIL  268 (269)
T ss_pred             HHhHHhccchhhhhHHhHHHHHHHhhhheEEEecCchhhHHHHHHHHHHHHHhhhc
Confidence            888888888888999999999999999999999988887    5788888888764

Members include glucose uptake proteins [], ribose transport proteins, and several putative and hypothetical membrane proteins probably involved in sugar transport across bacterial membranes.; GO: 0015144 carbohydrate transmembrane transporter activity, 0034219 carbohydrate transmembrane transport, 0016021 integral to membrane

>PRK13499 rhamnose-proton symporter; Provisional

Probab=94.01  E-value=0.033  Score=51.24  Aligned_cols=122  Identities=17%  Similarity=0.157  Sum_probs=87.6

Q ss_pred             CCchhHHHHHHHHHHHHHHHHHHHHHhhHHHhhc-------cC-------c-----ccCCCCccccc---hhHHHHHHH-
Q 028389           14 SSDNIKGLILALSSSIFIGSSFIVKKKGLKKAGA-------SG-------V-----RAGFGGYSYLY---EPLWWVGMI-   70 (209)
Q Consensus        14 ~~~~~iGi~LAl~ss~~i~~g~vlqK~~~~~~~~-------~~-------~-----~a~~~~~~~l~---~~~W~~G~~-   70 (209)
                      +.+..+|+...++++++.+.=.+=||| . +.-+       .+       +     -..++..++++   ...|..+++ 
T Consensus         2 ~~~~~~G~~~~~i~~~~~GS~~~p~K~-~-k~w~wE~~W~v~gi~~wl~~~~~~g~~~~~~f~~~~~~~~~~~~~~~~l~   79 (345)
T PRK13499          2 SNAIILGIIWHLIGGASSGSFYAPFKK-V-KKWSWETMWSVGGIFSWLILPWLIAALLLPDFWAYYSSFSGSTLLPVFLF   79 (345)
T ss_pred             CchhHHHHHHHHHHHHHhhcccccccc-c-CCCchhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHhcCHHHHHHHHHH
Confidence            456788999999999999988888888 2 2111       00       0     00011223333   334666654 


Q ss_pred             --HHHHHHHHHHHHHhhccchhhhcch-hhhHHHHHHHHHHHhhccc---ccc----cchhhhHheeceeeeEeecC
Q 028389           71 --TMVVGEIANFAAYAFAPAILVTPLG-ALSIIISAALAHIILRERL---HIF----GILGCILCVVGSTTIVLHAP  137 (209)
Q Consensus        71 --l~~lG~~~~f~Al~fap~slV~PLg-a~~lv~~~ila~~~L~E~l---~~~----~~~G~~l~i~G~~lvv~~a~  137 (209)
                        +-.+|++.++.++.+.-.|+-.|++ +++++.+.++.+.+++|=-   +..    ...|++++++|+.+....+.
T Consensus        80 G~~W~iG~i~~~~s~~~iGvS~~~pIs~Gl~lv~gtL~~~i~~gew~~~~~t~~g~~~~~gv~liliGi~l~s~Ag~  156 (345)
T PRK13499         80 GALWGIGGITYGLTMRYLGMSLGIGIAIGITLIVGTLMPPIINGNFDVLLATNGGRMTLLGVLVALIGVAIVGRAGQ  156 (345)
T ss_pred             HHHHHhhhhhHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHccccccccccchHHHHHHHHHHHHHHHHHHHHhhh
Confidence              4679999999999999999999998 8999999999999998643   333    48999999999998766433

>PRK10532 threonine and homoserine efflux system; Provisional

Probab=93.13  E-value=0.49  Score=41.56  Aligned_cols=112  Identities=14%  Similarity=0.047  Sum_probs=72.8

Q ss_pred             chhHHHHHHHHHHHHHHHHHHHHHhhHHHhhcc---Cccc----------CCCCccccchhHH----HHHHHHHHHHHHH
Q 028389           16 DNIKGLILALSSSIFIGSSFIVKKKGLKKAGAS---GVRA----------GFGGYSYLYEPLW----WVGMITMVVGEIA   78 (209)
Q Consensus        16 ~~~iGi~LAl~ss~~i~~g~vlqK~~~~~~~~~---~~~a----------~~~~~~~l~~~~W----~~G~~l~~lG~~~   78 (209)
                      +...|+.+.+.+.++.+.+.+..|.+..+.+..   ..|-          -..++...+++.|    +.|.. +.....+
T Consensus         9 ~~~~~~~~~~la~~~~~~~~~~~K~~~~~~~~~~~~~~R~~~a~l~l~~~~~~~~~~~~~~~~~~~~~~g~~-~~~~~~~   87 (293)
T PRK10532          9 PVWLPILLLLIAMASIQSGASLAKSLFPLVGAPGVTALRLALGTLILIAIFKPWRLRFAKEQRLPLLFYGVS-LGGMNYL   87 (293)
T ss_pred             ccchHHHHHHHHHHHHHhhHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHhHHhccCCHHHHHHHHHHHHH-HHHHHHH
Confidence            447889999999999999999999876542211   1110          0001111222333    55553 5666777


Q ss_pred             HHHHHhhccchhhhcchhhhHHHHHHHHHHHhhcccccccchhhhHheeceeeeEe
Q 028389           79 NFAAYAFAPAILVTPLGALSIIISAALAHIILRERLHIFGILGCILCVVGSTTIVL  134 (209)
Q Consensus        79 ~f~Al~fap~slV~PLga~~lv~~~ila~~~L~E~l~~~~~~G~~l~i~G~~lvv~  134 (209)
                      .+.++...|++..+-+.....++.+++++    |+.  .++.++.++++|+.+++.
T Consensus        88 ~~~al~~~~~~~a~~l~~t~Pi~~~ll~~----~~~--~~~~~~~i~~~Gv~li~~  137 (293)
T PRK10532         88 FYLSIQTVPLGIAVALEFTGPLAVALFSS----RRP--VDFVWVVLAVLGLWFLLP  137 (293)
T ss_pred             HHHHHhcccHHHHHHHHHHHHHHHHHHhc----CCh--HHHHHHHHHHHHHheeee
Confidence            88899999999877777777777776653    543  346677888899887754

>COG2962 RarD Predicted permeases [General function prediction only]

Probab=92.91  E-value=0.14  Score=46.08  Aligned_cols=121  Identities=19%  Similarity=0.133  Sum_probs=83.8

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHh-hHHHhhc-cCc----------------ccCCCCccccchhHHHHHHHHHHHHHHH
Q 028389           17 NIKGLILALSSSIFIGSSFIVKKK-GLKKAGA-SGV----------------RAGFGGYSYLYEPLWWVGMITMVVGEIA   78 (209)
Q Consensus        17 ~~iGi~LAl~ss~~i~~g~vlqK~-~~~~~~~-~~~----------------~a~~~~~~~l~~~~W~~G~~l~~lG~~~   78 (209)
                      .--|+.+++.+.++.|.--..-|. ......+ -..                |..++.++..|+|+=+....+-.+=...
T Consensus         5 ~~~Gil~~l~Ay~lwG~lp~y~kll~~~~~~eIlahRviwS~~~~l~ll~~~r~~~~~~~~~~~p~~~~~~~l~a~li~~   84 (293)
T COG2962           5 SRKGILLALLAYLLWGLLPLYFKLLEPLPATEILAHRVIWSFPFMLALLFLLRQWRELKQLLKQPKTLLMLALTALLIGL   84 (293)
T ss_pred             ccchhHHHHHHHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhCcHHHHHHHHHHHHHHH
Confidence            345888899999888876655554 1111000 000                1112234567788777777776666678


Q ss_pred             HHHHHhhccch---hhhcch-hhhHHHHHHHHHHHhhcccccccchhhhHheeceeeeEeecC
Q 028389           79 NFAAYAFAPAI---LVTPLG-ALSIIISAALAHIILRERLHIFGILGCILCVVGSTTIVLHAP  137 (209)
Q Consensus        79 ~f~Al~fap~s---lV~PLg-a~~lv~~~ila~~~L~E~l~~~~~~G~~l~i~G~~lvv~~a~  137 (209)
                      |..-|.+||-.   +=+.|| =+..++|.+++..++|||+++.+|+.+.+..+|+..-..+..
T Consensus        85 nW~lfiWAvn~g~~leaSLGY~InPL~~VllG~lflkErls~~Q~iAV~lA~~GV~~~~~~~g  147 (293)
T COG2962          85 NWWLFIWAVNNGHVLEASLGYFINPLVNVLLGRLFLKERLSRLQWIAVGLAAAGVLIQTWLLG  147 (293)
T ss_pred             HHHHhheecCCCchhHHHhHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHcC
Confidence            88889998865   445555 356678899999999999999999999999999987655544

>PF08449 UAA: UAA transporter family; InterPro: IPR013657 This family includes transporters with a specificity for UDP-N-acetylglucosamine []

Probab=92.52  E-value=0.48  Score=41.91  Aligned_cols=120  Identities=22%  Similarity=0.154  Sum_probs=74.6

Q ss_pred             CCCCchhHHHHHHHHHHHHHHHHHHHHHhhHHHhhccCccc-----------------C---CCCcc----ccchhHHHH
Q 028389           12 GMSSDNIKGLILALSSSIFIGSSFIVKKKGLKKAGASGVRA-----------------G---FGGYS----YLYEPLWWV   67 (209)
Q Consensus        12 ~~~~~~~iGi~LAl~ss~~i~~g~vlqK~~~~~~~~~~~~a-----------------~---~~~~~----~l~~~~W~~   67 (209)
                      +...++..|+.+.+.+-++-+.-.+.|+|-..+.+.+..+.                 .   ++..+    ..+.|..+.
T Consensus       147 ~~~~~~~~G~~ll~~sl~~~a~~~~~qe~~~~~~~~~~~~~mfy~n~~~~~~~~~~~~~l~~~~~~~~~~f~~~~p~~~~  226 (303)
T PF08449_consen  147 SSSFSSALGIILLLLSLLLDAFTGVYQEKLFKKYGKSPWELMFYTNLFSLPFLLILLFLLPTGEFRSAIRFISAHPSVLL  226 (303)
T ss_pred             cccccchhHHHHHHHHHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHHHHHhhHhhHHHHHHHHhHHHHH
Confidence            33344556999999999999999999999765544322110                 0   01011    112233222


Q ss_pred             HH-HHHHHHHHHH---HHHHhhccchhhhcchhhhHHHHHHHHHHHhhcccccccchhhhHheeceee
Q 028389           68 GM-ITMVVGEIAN---FAAYAFAPAILVTPLGALSIIISAALAHIILRERLHIFGILGCILCVVGSTT  131 (209)
Q Consensus        68 G~-~l~~lG~~~~---f~Al~fap~slV~PLga~~lv~~~ila~~~L~E~l~~~~~~G~~l~i~G~~l  131 (209)
                      -+ .....+.+++   +.-..--.+...+=.+.+--+.+.+++.++.+++++..+|.|+.++..|..+
T Consensus       227 ~l~~~s~~~~~g~~~i~~~~~~~~al~~t~v~t~Rk~~sillS~~~f~~~~~~~~~~G~~lv~~g~~~  294 (303)
T PF08449_consen  227 YLLLFSLTGALGQFFIFYLIKKFSALTTTIVTTLRKFLSILLSVIIFGHPLSPLQWIGIVLVFAGIFL  294 (303)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhcCchhhhhHHHHHHHHHHHHHHHhcCCcCChHHHHHHHHhHHHHHH
Confidence            22 2222333333   3333333445555566667788889999999999999999999999998764

; GO: 0055085 transmembrane transport

>KOG4831 consensus Unnamed protein [Function unknown]

Probab=92.45  E-value=0.14  Score=40.00  Aligned_cols=78  Identities=18%  Similarity=0.250  Sum_probs=65.5

Q ss_pred             CCccccchhHHHHHHHHHHHHHHHHHHHHhhccchhhhcch-hhhHHHHHHHHHHHhhcccc-cccchhhhHheeceeee
Q 028389           55 GGYSYLYEPLWWVGMITMVVGEIANFAAYAFAPAILVTPLG-ALSIIISAALAHIILRERLH-IFGILGCILCVVGSTTI  132 (209)
Q Consensus        55 ~~~~~l~~~~W~~G~~l~~lG~~~~f~Al~fap~slV~PLg-a~~lv~~~ila~~~L~E~l~-~~~~~G~~l~i~G~~lv  132 (209)
                      +.+..+.|+..|+=+++---|+...+.-++-+|.++--|.. +++..+++++...+ +|+.. ++...|+.++++|+.+.
T Consensus        45 e~~tl~l~w~Y~iPFllNqcgSaly~~tLa~a~islavpv~nsltfafta~~G~~L-GE~~~g~~a~lGt~liv~Gi~Lc  123 (125)
T KOG4831|consen   45 EMKTLFLNWEYLIPFLLNQCGSALYYLTLASAPISLAVPVTNSLTFAFTAIFGKAL-GEETQGGLALLGTSLIVFGIWLC  123 (125)
T ss_pred             HHHHHHHhHHHHHHHHHHHhhHHHHHHHHhcCCceeeeeecchhHHHHHHHHHHHh-ccccccceeehhhhHHhhhhhhe
Confidence            45567778888999999888999999999999999999986 78999999988765 56554 56699999999998765


Q ss_pred             E
Q 028389          133 V  133 (209)
Q Consensus       133 v  133 (209)
                      +
T Consensus       124 i  124 (125)
T KOG4831|consen  124 I  124 (125)
T ss_pred             e
Confidence            4

>KOG3912 consensus Predicted integral membrane protein [General function prediction only]

Probab=92.17  E-value=0.3  Score=44.31  Aligned_cols=78  Identities=14%  Similarity=0.152  Sum_probs=68.3

Q ss_pred             cccchhHHHHHHHHHHHHHHHHHHHHhhccchhhhcchhhhHHHHHHHHHHHhhcccccccchhhhHheeceeeeEee
Q 028389           58 SYLYEPLWWVGMITMVVGEIANFAAYAFAPAILVTPLGALSIIISAALAHIILRERLHIFGILGCILCVVGSTTIVLH  135 (209)
Q Consensus        58 ~~l~~~~W~~G~~l~~lG~~~~f~Al~fap~slV~PLga~~lv~~~ila~~~L~E~l~~~~~~G~~l~i~G~~lvv~~  135 (209)
                      +.++-.....=.++.+.|....++++-+..++--|=+-..-+++..+++.-+||++++.++|+|+..+++|.+.+...
T Consensus        82 ~pf~p~lfl~Pal~Di~gsslm~vgL~lTsASsfQMlRGaviIFvglfst~~Ln~ti~~~qWl~i~fv~lGlviVg~~  159 (372)
T KOG3912|consen   82 SPFNPVLFLPPALCDIAGSSLMYVGLNLTSASSFQMLRGAVIIFVGLFSTMFLNRTITGRQWLGILFVSLGLVIVGSL  159 (372)
T ss_pred             CCCCcceecChHHHHHhhhHHHHHHHHHhhHHHHHHhhcchhhhhHHHHHHHHhcccchhhHHHHHHHHhhhheeeee
Confidence            344444555567888999999999999999999999999999999999999999999999999999999998877655

>KOG2234 consensus Predicted UDP-galactose transporter [Carbohydrate transport and metabolism]

Probab=91.42  E-value=0.23  Score=45.77  Aligned_cols=79  Identities=16%  Similarity=0.174  Sum_probs=67.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHhhccchhhhcchhhhHHHHHHHHHHHhhcccccccchhhhHheeceeeeEeecCCccccC
Q 028389           65 WWVGMITMVVGEIANFAAYAFAPAILVTPLGALSIIISAALAHIILRERLHIFGILGCILCVVGSTTIVLHAPAEREIE  143 (209)
Q Consensus        65 W~~G~~l~~lG~~~~f~Al~fap~slV~PLga~~lv~~~ila~~~L~E~l~~~~~~G~~l~i~G~~lvv~~a~~~~~~~  143 (209)
                      |-+=.++|.+-+-..++++..-|++.-+....+-++.++++...+|++|+++++|...++...|+.++=...+.+.+..
T Consensus        95 ~~vPa~iYalqNnl~yval~~ldaatyqVt~qlKI~tTA~f~vl~L~rkLs~~Qw~Al~lL~~Gv~~vQ~~~~~~~~a~  173 (345)
T KOG2234|consen   95 VSVPALIYALQNNLQYVALSNLDAATYQVTYQLKILTTAIFSVLILRRKLSRLQWMALVLLFAGVALVQLPSLSPTGAK  173 (345)
T ss_pred             HHHHHHHHHHhhhHHHHHHhcCCchhhhhhhhHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHhccCCCCCCcc
Confidence            3344567888887899999999999999999999999999999999999999999999999999998764444443333

>PRK02237 hypothetical protein; Provisional

Probab=89.99  E-value=0.73  Score=35.84  Aligned_cols=48  Identities=21%  Similarity=0.373  Sum_probs=40.4

Q ss_pred             hhhcchhhhHHHHHHHHHHHhhcccccccchhhhHheeceeeeEeecCC
Q 028389           90 LVTPLGALSIIISAALAHIILRERLHIFGILGCILCVVGSTTIVLHAPA  138 (209)
Q Consensus        90 lV~PLga~~lv~~~ila~~~L~E~l~~~~~~G~~l~i~G~~lvv~~a~~  138 (209)
                      +-+.-|.+-++.+.+.....-|+|.++.|++|.++|.+|+.++ +++|.
T Consensus        61 vYAAYGGvyI~~Sl~W~w~vdg~~Pd~~D~iGa~v~L~G~~iI-~~~pR  108 (109)
T PRK02237         61 VYAAYGGVYVAGSLLWLWVVDGVRPDRWDWIGAAICLVGMAVI-MYAPR  108 (109)
T ss_pred             HHHHhhhHHHHHHHHHHHHhcCcCCChhHHHhHHHHHHhHHHh-eecCC
Confidence            4455678888888899999999999999999999999998766 56664

>PTZ00343 triose or hexose phosphate/phosphate translocator; Provisional

Probab=89.61  E-value=1.3  Score=40.36  Aligned_cols=50  Identities=14%  Similarity=0.292  Sum_probs=39.3

Q ss_pred             HHhhccchhhhcchhhhHHHHHHHHHHHhhcccccccchhhhHheeceee
Q 028389           82 AYAFAPAILVTPLGALSIIISAALAHIILRERLHIFGILGCILCVVGSTT  131 (209)
Q Consensus        82 Al~fap~slV~PLga~~lv~~~ila~~~L~E~l~~~~~~G~~l~i~G~~l  131 (209)
                      ++.-.++.--+=.+.+--++..+++..+++|+++..+++|+++++.|+.+
T Consensus       296 ~l~~~s~~t~sv~~~lk~V~~iv~s~l~~ge~lt~~~~iG~~lii~Gv~l  345 (350)
T PTZ00343        296 CLGKVNQVTHAVANTLKRVVIIVSSIIIFQTQVTLLGYLGMAVAILGALL  345 (350)
T ss_pred             HHhccchhHHHHHHHHHHHHHhhhhHHHhCCCCchHhHHHHHHHHHHHHH
Confidence            34444444445555667788888999999999999999999999999865

>COG1742 Uncharacterized conserved protein [Function unknown]

Probab=88.84  E-value=1.6  Score=33.89  Aligned_cols=49  Identities=20%  Similarity=0.430  Sum_probs=40.8

Q ss_pred             hhhcchhhhHHHHHHHHHHHhhcccccccchhhhHheeceeeeEeecCCc
Q 028389           90 LVTPLGALSIIISAALAHIILRERLHIFGILGCILCVVGSTTIVLHAPAE  139 (209)
Q Consensus        90 lV~PLga~~lv~~~ila~~~L~E~l~~~~~~G~~l~i~G~~lvv~~a~~~  139 (209)
                      +-+.-|.+-++.+.+-....-|.+.++.||.|...|++|+. +++++|..
T Consensus        60 vYAAYGGvyI~~sL~W~~~Vdg~~pdr~D~~Ga~icl~G~~-vil~~pR~  108 (109)
T COG1742          60 VYAAYGGVYIAASLAWLWVVDGVRPDRYDWIGAAICLAGVA-VILFGPRG  108 (109)
T ss_pred             HHHHhcchHHHHHHHHHHHHcCcCCcHHHhhhHHHHHhcee-eeEeCCCC
Confidence            45667888888999999999999999999999999999954 45677643

>PF04142 Nuc_sug_transp: Nucleotide-sugar transporter; InterPro: IPR007271 This family of membrane proteins transport nucleotide sugars from the cytoplasm into golgi vesicles

Probab=88.22  E-value=3.2  Score=36.10  Aligned_cols=111  Identities=20%  Similarity=0.326  Sum_probs=74.9

Q ss_pred             CCchhHHHHHHHHHHHHHHHHHHHHHhhHHHhhcc-Ccc-------------------cCC--CCccccchhHH--HHHH
Q 028389           14 SSDNIKGLILALSSSIFIGSSFIVKKKGLKKAGAS-GVR-------------------AGF--GGYSYLYEPLW--WVGM   69 (209)
Q Consensus        14 ~~~~~iGi~LAl~ss~~i~~g~vlqK~~~~~~~~~-~~~-------------------a~~--~~~~~l~~~~W--~~G~   69 (209)
                      .++..+|+.+.+.++++-+.+-+...|-+++.+.+ ..|                   +++  .....+....|  |.=+
T Consensus       109 ~~~~~~G~~~vl~~~~~S~~agVy~E~~lK~~~~s~~~~N~qL~~~gi~~~~~~~~~~~~~~~~~~g~f~G~~~~~~~~i  188 (244)
T PF04142_consen  109 NQNPLLGLLAVLAAAFLSGFAGVYFEKLLKRSNVSLWIQNMQLYLFGILFNLLALLLSDGSAISESGFFHGYSWWVWIVI  188 (244)
T ss_pred             cchhHhHHHHHHHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHHHHHhcccccccccCCchhhcchHHHHHH
Confidence            45678999999999999999999888866654321 000                   010  11123332222  2333


Q ss_pred             HHHHHHHHHHHHHHhhccchhhhcchhhhHHHHHHHHHHHhhcccccccchhhhH
Q 028389           70 ITMVVGEIANFAAYAFAPAILVTPLGALSIIISAALAHIILRERLHIFGILGCIL  124 (209)
Q Consensus        70 ~l~~lG~~~~f~Al~fap~slV~PLga~~lv~~~ila~~~L~E~l~~~~~~G~~l  124 (209)
                      .+..+|-+.--..+.+++-.+=.=-.+++++.+++++..+.+.+++..-.+|+.+
T Consensus       189 ~~~a~gGllva~v~KyadnI~K~fa~a~siv~t~~~s~~lf~~~~s~~f~lg~~~  243 (244)
T PF04142_consen  189 FLQAIGGLLVAFVLKYADNIVKGFATAVSIVLTAVLSVLLFGFPPSLSFLLGAAL  243 (244)
T ss_pred             HHHHHhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhCCCCchHHhhheec
Confidence            4455666666667777776666666789999999999999999999888887765

P78382 from SWISSPROT transports CMP-sialic acid, P78381 from SWISSPROT transports UDP-galactose and Q9Y2D2 from SWISSPROT transports UDP-GlcNAc. This family has some but not complete overlap with the UDP-galactose transporter family IPR004689 from INTERPRO.; GO: 0005351 sugar:hydrogen symporter activity, 0008643 carbohydrate transport, 0000139 Golgi membrane, 0016021 integral to membrane

>KOG1441 consensus Glucose-6-phosphate/phosphate and phosphoenolpyruvate/phosphate antiporter [Carbohydrate transport and metabolism; Amino acid transport and metabolism]

Probab=82.13  E-value=2.8  Score=38.19  Aligned_cols=63  Identities=13%  Similarity=0.234  Sum_probs=57.2

Q ss_pred             HHHHHHHHHHHHhhccchhhhcchhhhHHHHHHHHHHHhhcccccccchhhhHheeceeeeEe
Q 028389           72 MVVGEIANFAAYAFAPAILVTPLGALSIIISAALAHIILRERLHIFGILGCILCVVGSTTIVL  134 (209)
Q Consensus        72 ~~lG~~~~f~Al~fap~slV~PLga~~lv~~~ila~~~L~E~l~~~~~~G~~l~i~G~~lvv~  134 (209)
                      +.+|-+..-.|+..-|.+.+|-+.+...+++++++.++.+|+.++..+.-...++.|+.+-..
T Consensus        93 ~~~~~v~~n~Sl~~v~VsF~q~iKa~~P~~tvl~~~~~~~~~~s~~~~lsL~piv~GV~ias~  155 (316)
T KOG1441|consen   93 FCISHVLGNVSLSYVPVSFYQTIKALMPPFTVLLSVLLLGKTYSSMTYLSLLPIVFGVAIASV  155 (316)
T ss_pred             HHHHHHhcchhhhccchhHHHHHHhhcchhHHHHHHHHhCCCCcceEEEEEEEeeeeEEEeee
Confidence            457888888999999999999999999999999999999999999999888888888776544

>KOG2765 consensus Predicted membrane protein [Function unknown]

Probab=81.46  E-value=6  Score=37.22  Aligned_cols=130  Identities=18%  Similarity=0.212  Sum_probs=83.9

Q ss_pred             CCccccCCCCc--hhHHHHHHHHHHHHHHHHHHHHHhhHHHhhcc-Cccc-----------------------CCCCccc
Q 028389            6 GHSWRDGMSSD--NIKGLILALSSSIFIGSSFIVKKKGLKKAGAS-GVRA-----------------------GFGGYSY   59 (209)
Q Consensus         6 ~~~~~~~~~~~--~~iGi~LAl~ss~~i~~g~vlqK~~~~~~~~~-~~~a-----------------------~~~~~~~   59 (209)
                      +.+|++++.+.  ..+|-.+|+.||+++|+=.++-||..-+++++ +.+.                       +.++.+.
T Consensus       232 ~~s~~~~~~~a~~~llG~llaL~sA~~YavY~vllk~~~~~eg~rvdi~lffGfvGLfnllllwP~l~iL~~~~~e~F~l  311 (416)
T KOG2765|consen  232 GDSKQNSDLPASRPLLGNLLALLSALLYAVYTVLLKRKIGDEGERVDIQLFFGFVGLFNLLLLWPPLIILDFFGEERFEL  311 (416)
T ss_pred             ccccccccCCccchhHHHHHHHHHHHHHHHHHHHHHhhcccccccccHHHHHHHHHHHHHHHHhHHHHHHHHhccCcccC
Confidence            34566555443  49999999999999999999988854444221 1110                       2222222


Q ss_pred             cchhH----HHHHHHHHHHHHHHHHHHHhhccchhhhcchhhhHHHHHHHHHHHhhcccccccchhhhHheeceeeeEee
Q 028389           60 LYEPL----WWVGMITMVVGEIANFAAYAFAPAILVTPLGALSIIISAALAHIILRERLHIFGILGCILCVVGSTTIVLH  135 (209)
Q Consensus        60 l~~~~----W~~G~~l~~lG~~~~f~Al~fap~slV~PLga~~lv~~~ila~~~L~E~l~~~~~~G~~l~i~G~~lvv~~  135 (209)
                      .+++.    -..|++--++...+|..|..+....+++-=-++++..+++.=..+-+.+.+...++|.+.+..|-+.+-..
T Consensus       312 P~~~q~~~vv~~~ligtvvSDylW~~a~~lTs~Lv~TlgmSltIPLA~~aD~l~k~~~~S~~~iiGsi~Ifv~Fv~vn~~  391 (416)
T KOG2765|consen  312 PSSTQFSLVVFNNLIGTVVSDYLWAKAVLLTSPLVVTLGMSLTIPLAMFADVLIKGKHPSALYIIGSIPIFVGFVIVNIS  391 (416)
T ss_pred             CCCceeEeeeHhhHHHHHHHHHHHHHHHHhccchhheeeeeEeeeHHHHHHHHHcCCCCCHHHHHHHHHHHHHHhheecc
Confidence            22221    23455555666777777776666444444447777777776666668889999999999999986665443

>KOG2766 consensus Predicted membrane protein [Function unknown]

Probab=80.90  E-value=1.2  Score=40.07  Aligned_cols=56  Identities=23%  Similarity=0.493  Sum_probs=50.5

Q ss_pred             HHHhhccchhhhcchhhhHHHHHHHHHHHhhcccccccchhhhHheeceeeeEeec
Q 028389           81 AAYAFAPAILVTPLGALSIIISAALAHIILRERLHIFGILGCILCVVGSTTIVLHA  136 (209)
Q Consensus        81 ~Al~fap~slV~PLga~~lv~~~ila~~~L~E~l~~~~~~G~~l~i~G~~lvv~~a  136 (209)
                      -||.+...+-++=|-.-+.+.-.+++.++||.|-+..++.|++.|+.|++++|...
T Consensus        97 ~AyQyTsmtSi~lLDcwaip~v~~lsw~fLktrYrlmki~gV~iCi~GvvmvV~sD  152 (336)
T KOG2766|consen   97 KAYQYTSMTSIMLLDCWAIPCVLVLSWFFLKTRYRLMKISGVVICIVGVVMVVFSD  152 (336)
T ss_pred             eehhhcchHHHHHHHHhhhHHHHHHHHHHHHHHHhhheeeeEEeEecceEEEEEee
Confidence            47888888888888899999999999999999999999999999999999988654

>PF02694 UPF0060: Uncharacterised BCR, YnfA/UPF0060 family; InterPro: IPR003844 This entry describes integral membrane proteins of unknown function

Probab=80.62  E-value=1.2  Score=34.56  Aligned_cols=46  Identities=26%  Similarity=0.468  Sum_probs=39.4

Q ss_pred             hhcchhhhHHHHHHHHHHHhhcccccccchhhhHheeceeeeEeecC
Q 028389           91 VTPLGALSIIISAALAHIILRERLHIFGILGCILCVVGSTTIVLHAP  137 (209)
Q Consensus        91 V~PLga~~lv~~~ila~~~L~E~l~~~~~~G~~l~i~G~~lvv~~a~  137 (209)
                      -+.-|.+-++.+.+-....-|++.++.|++|..+|+.|+.++ +++|
T Consensus        60 YAAYGGvfI~~Sl~W~w~vdg~~Pd~~D~iGa~i~L~G~~iI-~~~P  105 (107)
T PF02694_consen   60 YAAYGGVFIVASLLWGWLVDGVRPDRWDWIGAAICLVGVAII-LFAP  105 (107)
T ss_pred             HHHhhhhHHHHHHHHHhhhcCcCCChHHHHhHHHHHHhHHhe-EecC
Confidence            445677888889999999999999999999999999998766 5665

; GO: 0016020 membrane

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	209
3b5d_A	110	Multidrug transporter EMRE; helical membrane prote	98.76
2i68_A	137	Protein EMRE; transmembrane protein, small-multidr	98.63

>3b5d_A Multidrug transporter EMRE; helical membrane protein, multidrug resistance transporter, SMR, antiport, inner membrane, transmembrane; HET: P4P; 3.80A {Escherichia coli K12} PDB: 3b61_A 3b62_A*

Probab=98.76  E-value=2.5e-08  Score=75.68  Aligned_cols=100  Identities=16%  Similarity=0.113  Sum_probs=83.0

Q ss_pred             HHHHHHHHHHHHHHHHHHhhHHHhhccCcccCCCCccccchhHHHHHHHHHHHHHHHHHHHHhhccchhhhcc-hhhhHH
Q 028389           22 ILALSSSIFIGSSFIVKKKGLKKAGASGVRAGFGGYSYLYEPLWWVGMITMVVGEIANFAAYAFAPAILVTPL-GALSII  100 (209)
Q Consensus        22 ~LAl~ss~~i~~g~vlqK~~~~~~~~~~~~a~~~~~~~l~~~~W~~G~~l~~lG~~~~f~Al~fap~slV~PL-ga~~lv  100 (209)
                      .+-+.+.++-..+....|++.      +         ..+.+.++.+...++++..+...|+...|.+.+.|+ .+++.+
T Consensus         5 l~l~~a~~~e~~~~~~lK~s~------~---------~~~~~~~~~~~~~~~~~~~~~~~al~~~p~s~ay~i~~g~~~v   69 (110)
T 3b5d_A            5 IYLGGAILAEVIGTTLMKFSE------G---------FTRLWPSVGTIICYCASFWLLAQTLAYIPTGIAYAIWSGVGIV   69 (110)
T ss_pred             HHHHHHHHHHHHHHHHHHhcc------C---------cchHHHHHHHHHHHHHHHHHHHHHHHhCChhhHHHHHhhHHHH
Confidence            345566777778888888851      1         113355677888889999999999999999999999 899999


Q ss_pred             HHHHHHHHHhhcccccccchhhhHheeceeeeEeec
Q 028389          101 ISAALAHIILRERLHIFGILGCILCVVGSTTIVLHA  136 (209)
Q Consensus       101 ~~~ila~~~L~E~l~~~~~~G~~l~i~G~~lvv~~a  136 (209)
                      .+++++.+++||++++.++.|+.+++.|++++-..+
T Consensus        70 ~~~l~~~~~~~E~~s~~~~~Gi~lIi~Gv~~l~~~~  105 (110)
T 3b5d_A           70 LISLLSWGFFGQRLDLPAIIGMMLICAGVLIINLLS  105 (110)
T ss_pred             HHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhcCC
Confidence            999999999999999999999999999998875543

>2i68_A Protein EMRE; transmembrane protein, small-multidrug resistance, transporter, homodimer, dual topology, transport protein; NMR {Escherichia coli}

Probab=98.63  E-value=2.2e-08  Score=79.25  Aligned_cols=99  Identities=15%  Similarity=0.101  Sum_probs=67.0

Q ss_pred             HHHHHHHHHHHHHHHHHhhHHHhhccCcccCCCCccccchhHHHHHHHHHHHHHHHHHHHHhhccchhhhcc-hhhhHHH
Q 028389           23 LALSSSIFIGSSFIVKKKGLKKAGASGVRAGFGGYSYLYEPLWWVGMITMVVGEIANFAAYAFAPAILVTPL-GALSIII  101 (209)
Q Consensus        23 LAl~ss~~i~~g~vlqK~~~~~~~~~~~~a~~~~~~~l~~~~W~~G~~l~~lG~~~~f~Al~fap~slV~PL-ga~~lv~  101 (209)
                      +-+.+.++-..|....|++.      +         ..+.+.++.|.+.++++..+...++...|++.+.|+ .+++.++
T Consensus         6 ~Ll~ail~ev~~~~~lK~s~------g---------~~~~~~~~l~i~~~~ls~~l~~~alk~i~~s~ay~iw~~l~pv~   70 (137)
T 2i68_A            6 YLGGAILAEVIGTTLMKFSE------G---------FTRLWPSVGTIICYCASFWLLAQTLAYIPTGIAYAIWSGVGIVL   70 (137)
T ss_dssp             HHHHHHHHHHHHHHHC---------------------------CHHHHHHHHHHHHHHHHHC-----CHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHhc------c---------cchHHHHHHHHHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHH
Confidence            44556677778888888851      1         112345578889999999999999999999999999 9999999


Q ss_pred             HHHHHHHHhhcccccccchhhhHheeceeeeEeec
Q 028389          102 SAALAHIILRERLHIFGILGCILCVVGSTTIVLHA  136 (209)
Q Consensus       102 ~~ila~~~L~E~l~~~~~~G~~l~i~G~~lvv~~a  136 (209)
                      +++++.+++||++++.++.|+++++.|++++....
T Consensus        71 ~~l~g~l~lgE~ls~~~~~Gi~LIi~GV~ll~~~~  105 (137)
T 2i68_A           71 ISLLSWGFFGQRLDLPAIIGMMLICAGVLIINLLS  105 (137)
T ss_dssp             HHHHHHHHHC------CHHHHHHHHHHHHHHHHC-
T ss_pred             HHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhcCC
Confidence            99999999999999999999999999998875543

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00