Citrus Sinensis ID: 028399

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------21
Protein Sequence
MSEKVCDKHGCKRRKIFRRIIAGILIFILIVLITILIVWAILRPTKPRFILQDATVYVFNVSNPNVLTSSFQVTISSRNPNDRIGIYYDKLDLYATYHSQQITYKTSLPTTYQGHKEINVWSPYVYGNAVPVAPYNAVSLTQDQSSGIIPLMFKIDGRVRWKVGTFITGKYHLYVRCPAYINFGDRQAGTAVGNNAVKYQLVQSCSVSV
Secondary Structure (PSIPRED)
cccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHEEEEcccccEEEEEEEEEEEEEcccccEEEEEEEEEEEEEcccccEEEEEEccEEEEEEccEEEEEEcccccEEEccccEEEEEEEEEEEEEEcccccHHcccccccccEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEcccccccEEEccccEEEEEccccEEEc
Secondary Structure Prediction (SSPRO)
ccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccEEEEEEEEEEEEEcccccccEEEEEEEEEEEccccEEEEEEEcEEEEEEEcccEEEcccccccccccccccEEEEEEEEcccccccHHHHHHHHHHHHcccEEEEEEEEEEEEEEEEEEEEccEEEEEEEEEEEEccccccccEcccccEEEEEEcEEEEEc
Coil and Loop (DISEMBL)
msekvcdkhgckRRKIFRRIIAGILIFILIVLITILIVWAIlrptkprfilqdATVYVFNvsnpnvltsSFQVTissrnpndrigiyydkldlyatyhsqqityktslpttyqghkeinvwspyvygnavpvapynavsltqdqssgiiplmFKIDgrvrwkvgtfitgkyhlyvrcpayinfgdrqagtavgNNAVKYQLVQSCSVSV
Flexible Loop (DISEMBL)
msekvcdkhgckrRKIFRRIIAGILIFILIVLITILIVWAILRPTKPRFILQDATVYVFNVSNPNVLTSsfqvtissrnpnDRIGIYYDKLDLYATYHSQQITYKTSLPTTYQGHKEINVWSPYVYGNAVPVAPYNAVSLTQDQSSGIIPLMFKIDGRVRWKVGTFITGKYHLYVRCPAYINFGDRQAGTAVGNNAVKYQLVQSCSVSV
Low Complexity Region (SEG)
MSEKVCDKHGCKRRKifrriiagilifilivlitilivwailRPTKPRFILQDATVYVFNVSNPNVLTSSFQVTISSRNPNDRIGIYYDKLDLYATYHSQQITYKTSLPTTYQGHKEINVWSPYVYGNAVPVAPYNAVSLTQDQSSGIIPLMFKIDGRVRWKVGTFITGKYHLYVRCPAYINFGDRQAGTAVGNNAVKYQLVQSCSVSV
Disordered region (IsUnstruct)
******DKHGCKRRKIFRRIIAGILIFILIVLITILIVWAILRPTKPRFILQDATVYVFNVSNPNVLTSSFQVTISSRNPNDRIGIYYDKLDLYATYHSQQITYKTSLPTTYQGHKEINVWSPYVYGNAVPVAPYNAVSLTQDQSSGIIPLMFKIDGRVRWKVGTFITGKYHLYVRCPAYINFGDRQAGTAVGNNAVKYQLVQ******
Disordered Region (DISOPRED)
*************RKIFRRIIAGILIFILIVLITILIVWAILRPTKPRFILQDATVYVFNVSNPNVLTSSFQVTISSRNPNDRIGIYYDKLDLYATYHSQQITYKTSLPTTYQGHKEINVWSPYVYGNAVPVAPYNAVSLTQDQSSGIIPLMFKIDGRVRWKVGTFITGKYHLYVRCPAYI***************VKYQLVQSCSVSV
Disordered Region (DISEMBL)
*********GCKRRKIFRRIIAGILIFILIVLITILIVWAILRPTKPRFILQDATVYVFNVSNPNVLTSSFQVTISSRNPNDRIGIYYDKLDLYATYHSQQITYKTSLPTTYQGHKEINVWSPYVYGNAVPVAPYNAVSLTQDQSSGIIPLMFKIDGRVRWKVGTFITGKYHLYVRCPAYINFGDRQAGTAVGNNAVKYQLVQSCSVSV
Disordered Region (DISPRO)
**********CKRRKIFRRIIAGILIFILIVLITILIVWAILRPTKPRFILQDATVYVFNVSNPNVLTSSFQVTISSRNPNDRIGIYYDKLDLYATYHSQQITYKTSLPTTYQGHKEINVWSPYVYGNAVPVAPYNAVSLTQDQSSGIIPLMFKIDGRVRWKVGTFITGKYHLYVRCPAYINFGDRQAGTAVGNNAVKYQLVQSCSVSV
Transmembrane Helix (TMHMM)
iiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
iiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MSEKVCDKHGCKRRKIFRRIIAGILIFILIVLITILIVWAILRPTKPRFILQDATVYVFNVSNPNVLTSSFQVTISSRNPNDRIGIYYDKLDLYATYHSQQITYKTSLPTTYQGHKEINVWSPYVYGNAVPVAPYNAVSLTQDQSSGIIPLMFKIDGRVRWKVGTFITGKYHLYVRCPAYINFGDRQAGTAVGNNAVKYQLVQSCSVSV
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	209	2.2.26 [Sep-21-2011]
Q8VZ13	221	Uncharacterized protein A	no	no	0.693	0.656	0.256	1e-07
O48915	219	Protein NDR1 OS=Arabidops	no	no	0.885	0.844	0.235	1e-05
Q9C615	416	Putative syntaxin-24 OS=A	no	no	0.650	0.326	0.246	0.0008

>sp|Q8VZ13|Y1816_ARATH Uncharacterized protein At1g08160 OS=Arabidopsis thaliana GN=At1g08160 PE=2 SV=1

 Score = 56.6 bits (135), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 38/148 (25%), Positives = 69/148 (46%), Gaps = 3/148 (2%)

Query: 37  IVWAILRPTKPRFILQDATVYVFNV-SNPNVLTSSFQVTISSRNPNDRIGIYYDKLDLYA 95
           I +  LRP +  + ++ A+V  F + +N + + + F   I S NP   + + Y  + +  
Sbjct: 57  ITYLTLRPKRLIYTVEAASVQEFAIGNNDDHINAKFSYVIKSYNPEKHVSVRYHSMRIST 116

Query: 96  TYHSQQITYKTSLPTTYQGHKEINVWSPYVYGNAVPVAPYNAVSLTQDQSSGIIPLMFKI 155
            +H+Q + +K   P   +   E  + +  V  N V ++ +NA  L  ++S G I +   I
Sbjct: 117 AHHNQSVAHKNISPFKQRPKNETRIETQLVSHN-VALSKFNARDLRAEKSKGTIEMEVYI 175

Query: 156 DGRVRWKVGTFITGKYHLYVRC-PAYIN 182
             RV +K   F + +  L   C P  IN
Sbjct: 176 TARVSYKTWIFRSRRRTLKAVCTPVMIN 203

Arabidopsis thaliana (taxid: 3702)

>sp|O48915|NDR1_ARATH Protein NDR1 OS=Arabidopsis thaliana GN=NDR1 PE=1 SV=1

 Score = 50.1 bits (118), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 48/204 (23%), Positives = 84/204 (41%), Gaps = 19/204 (9%)

Query: 18  RRIIAGILIFILIVLITILIVWAILRPTKPRFILQDATVYVFNVSNPNVLTSSFQVTISS 77
           R      L FI    +T L +W  LR  KP+  +Q+  +        +   ++    +  
Sbjct: 12  RNCCTCCLSFIFTAGLTSLFLWLSLRADKPKCSIQNFFIPALGKDPNSRDNTTLNFMVRC 71

Query: 78  RNPNDRIGIYYDKLDL-YATYHSQQITYKT-------SLPTTYQGHKEINVWSPYVYGNA 129
            NPN   GIYYD + L ++T ++ +I           ++P  YQGHK+        +G  
Sbjct: 72  DNPNKDKGIYYDDVHLNFSTINTTKINSSALVLVGNYTVPKFYQGHKK----KAKKWGQV 127

Query: 130 VPVAPYNAVSLTQDQSSGIIPLMFKIDGRVRWKVGTFITGKYHLYVRCPAYINFGD---- 185
            P+     +       S +  L  K   +VR+K+  + T +Y + V     +N GD    
Sbjct: 128 KPLNNQTVLRAVLPNGSAVFRLDLKT--QVRFKIVFWKTKRYGVEVGADVEVN-GDGVKA 184

Query: 186 RQAGTAVGNNAVKYQLVQSCSVSV 209
           ++ G  +  +   + L  S  +SV
Sbjct: 185 QKKGIKMKKSDSSFPLRSSFPISV 208

Involved in disease resistance. Required for resistance conferred by multiple R genes recognizing different bacterial and oomycete pathogen isolates like avirulent P.syringae or H.parasitica (downy mildew). Required for the establishment of hypersensitive response (HR) and systemic acquired resistance (SAR) after infection with the bacterial pathogen P.syringae DC3000 carrying avrRpt2. Required for resistance to the soilborne fungus V.longisporum. Interaction with RIN4 is required for the activation of the R gene RPS2 and RPS2-mediated resistance.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9C615|SYP24_ARATH Putative syntaxin-24 OS=Arabidopsis thaliana GN=SYP24 PE=3 SV=1

 Score = 43.9 bits (102), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 34/138 (24%), Positives = 59/138 (42%), Gaps = 2/138 (1%)

Query: 41  ILRPTKPRFILQDATVYVFNVSNPNVLTSSFQVTISSRNPNDRIGIYYDKLDLYATYHSQ 100
           ++R    +F + DA +  F++ + N L  S  + +S RN    IGI+YD+ +    Y +Q
Sbjct: 1   MVRSNDVKFQVYDAELTHFDLESNNNLQYSLSLNLSIRNSKSSIGIHYDRFEATVYYMNQ 60

Query: 101 QITYKTSLPTTYQGHKEINVWSPYVYGNAVPVAPYNA-VSLTQDQSSGIIPLMFKIDGRV 159
           ++     +P  Y G K   +      G  + +   N       DQ +G+  +  K+    
Sbjct: 61  RLGA-VPMPLFYLGSKNTMLLRALFEGQTLVLLKGNERKKFEDDQKTGVYRIDVKLSINF 119

Query: 160 RWKVGTFITGKYHLYVRC 177
           R  V   +T      VRC
Sbjct: 120 RVMVLHLVTWPMKPVVRC 137

Vesicle trafficking protein that functions in the secretory pathway.

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	209
255583570	209	conserved hypothetical protein [Ricinus	1.0	1.0	0.684	3e-86
388514587	210	unknown [Lotus japonicus]	1.0	0.995	0.657	1e-79
28392929	209	putative VAMP protein SEC22 [Arabidopsis	0.985	0.985	0.644	4e-79
18399308	209	NDR1/HIN1-Like protein 1 [Arabidopsis th	0.985	0.985	0.644	6e-79
356534536	209	PREDICTED: uncharacterized protein LOC10	1.0	1.0	0.626	2e-78
78214842	208	hairpin-induced 1-like protein NHL18B [B	0.990	0.995	0.647	3e-78
388519979	210	unknown [Medicago truncatula]	1.0	0.995	0.642	7e-78
312282849	208	unnamed protein product [Thellungiella h	0.990	0.995	0.642	1e-77
226498084	208	VAMP protein SEC22 [Zea mays] gi|7821484	0.990	0.995	0.637	2e-77
15231227	208	late embryogenesis abundant hydroxyproli	0.990	0.995	0.628	3e-76

>gi|255583570|ref|XP_002532541.1| conserved hypothetical protein [Ricinus communis] gi|223527730|gb|EEF29835.1| conserved hypothetical protein [Ricinus communis]

 Score =  323 bits (827), Expect = 3e-86,   Method: Compositional matrix adjust.
 Identities = 143/209 (68%), Positives = 178/209 (85%)

Query: 1   MSEKVCDKHGCKRRKIFRRIIAGILIFILIVLITILIVWAILRPTKPRFILQDATVYVFN 60
           MS K C  HG KRRK+FRRI AGILIF+ +VL+TILIVWA+LRP+KP+F+LQD TV+ FN
Sbjct: 1   MSAKDCGNHGHKRRKLFRRIFAGILIFLFLVLVTILIVWAVLRPSKPKFVLQDVTVFAFN 60

Query: 61  VSNPNVLTSSFQVTISSRNPNDRIGIYYDKLDLYATYHSQQITYKTSLPTTYQGHKEINV 120
            S PN LTS+FQ+T S+RNPND++GIYYDKLD+YATY +QQIT ++++PT YQGH+EINV
Sbjct: 61  ASTPNYLTSNFQITFSTRNPNDKVGIYYDKLDVYATYRNQQITLRSAIPTNYQGHEEINV 120

Query: 121 WSPYVYGNAVPVAPYNAVSLTQDQSSGIIPLMFKIDGRVRWKVGTFITGKYHLYVRCPAY 180
           WSP +YG AVPVAPYNA SL QDQ++G + +M K+DGRVR+KVGTF++G+YHLYV+CPAY
Sbjct: 121 WSPNIYGTAVPVAPYNAASLAQDQNAGAVLMMIKMDGRVRFKVGTFVSGRYHLYVKCPAY 180

Query: 181 INFGDRQAGTAVGNNAVKYQLVQSCSVSV 209
           I FG R AG  VG N+VKY L+ SCSVS+
Sbjct: 181 IQFGSRTAGIIVGENSVKYSLLVSCSVSL 209

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388514587|gb|AFK45355.1| unknown [Lotus japonicus]

 Score =  301 bits (770), Expect = 1e-79,   Method: Compositional matrix adjust.
 Identities = 138/210 (65%), Positives = 172/210 (81%), Gaps = 1/210 (0%)

Query: 1   MSEKVCDKHGCKRRKIFRRIIAGILIFILIVLITILIVWAILRPTKPRFILQDATVYVFN 60
           MS K CD H  K++KIFRRI  GI+IF+ IVL+TILI+WAIL+P KP F LQD TVY FN
Sbjct: 1   MSVKTCDHHKGKKKKIFRRIFWGIVIFLFIVLVTILIIWAILKPNKPTFTLQDVTVYAFN 60

Query: 61  VSNPNVLTSSFQVTISSRNPNDRIGIYYDKLDLYATYHSQQITYKTSLPTTYQGHKEINV 120
            +  N LTS+FQVT+S+RNPND+IG+YYD+LD Y TY SQQ+TY+T++P +YQGHKE++V
Sbjct: 61  ATMANFLTSNFQVTLSARNPNDKIGVYYDRLDAYITYQSQQVTYRTAIPPSYQGHKEMDV 120

Query: 121 WSPYVYGNAVPVAPYNAVSLTQDQSSGIIPLMFKIDGRVRWKVGTFITGKYHLYVRCPAY 180
           WSP+VYG  VPVAPYN V+L+QDQ++G + +  K+DG+VRWKVG F+TG YHL VRCPA+
Sbjct: 121 WSPFVYGTNVPVAPYNFVTLSQDQANGNVLVTVKVDGKVRWKVGAFVTGHYHLNVRCPAF 180

Query: 181 INFGDRQAGTAVGNN-AVKYQLVQSCSVSV 209
           I FG R  G AVG++ AVKYQLVQ CSVSV
Sbjct: 181 ITFGARSNGVAVGDSGAVKYQLVQRCSVSV 210

Source: Lotus japonicus

Species: Lotus japonicus

Genus: Lotus

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|28392929|gb|AAO41900.1| putative VAMP protein SEC22 [Arabidopsis thaliana]

 Score =  299 bits (766), Expect = 4e-79,   Method: Compositional matrix adjust.
 Identities = 134/208 (64%), Positives = 173/208 (83%), Gaps = 2/208 (0%)

Query: 4   KVCDKHGCKRRKIFRRIIAGILIFILIVLITILIVWAILRPTKPRFILQDATVYVFNVSN 63
           K C+ HG  RRK+ RRI   I+  + I+ +TIL++WAIL+P+KPRFILQDATVY FNVS 
Sbjct: 2   KDCENHGHSRRKLIRRIFWSIIFVLFIIFLTILLIWAILQPSKPRFILQDATVYAFNVSG 61

Query: 64  --PNVLTSSFQVTISSRNPNDRIGIYYDKLDLYATYHSQQITYKTSLPTTYQGHKEINVW 121
             PN+LTS+FQ+T+SSRNPN++IGIYYD+LD+YATY SQQIT+ TS+P TYQGHK++++W
Sbjct: 62  NPPNILTSNFQITLSSRNPNNKIGIYYDRLDVYATYRSQQITFPTSIPPTYQGHKDVDIW 121

Query: 122 SPYVYGNAVPVAPYNAVSLTQDQSSGIIPLMFKIDGRVRWKVGTFITGKYHLYVRCPAYI 181
           SP+VYG +VP+AP+N VSL  D+ +G++ L+ + DGRVRWKVGTFITGKYHL+V+CPAYI
Sbjct: 122 SPFVYGTSVPIAPFNGVSLDTDKDNGVVLLIIRADGRVRWKVGTFITGKYHLHVKCPAYI 181

Query: 182 NFGDRQAGTAVGNNAVKYQLVQSCSVSV 209
           NFG++  G  VG+NAVKY    SCSVSV
Sbjct: 182 NFGNKANGVIVGDNAVKYTFTTSCSVSV 209

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|18399308|ref|NP_566396.1| NDR1/HIN1-Like protein 1 [Arabidopsis thaliana] gi|6041819|gb|AAF02134.1|AC009918_6 unknown protein [Arabidopsis thaliana] gi|9502172|gb|AAF88021.1|AF264697_1 NDR1/HIN1-Like protein 1 [Arabidopsis thaliana] gi|21595601|gb|AAM66116.1| harpin-induced protein-like [Arabidopsis thaliana] gi|56381911|gb|AAV85674.1| At3g11660 [Arabidopsis thaliana] gi|58331799|gb|AAW70397.1| At3g11660 [Arabidopsis thaliana] gi|332641559|gb|AEE75080.1| NDR1/HIN1-Like protein 1 [Arabidopsis thaliana]

 Score =  299 bits (765), Expect = 6e-79,   Method: Compositional matrix adjust.
 Identities = 134/208 (64%), Positives = 173/208 (83%), Gaps = 2/208 (0%)

Query: 4   KVCDKHGCKRRKIFRRIIAGILIFILIVLITILIVWAILRPTKPRFILQDATVYVFNVSN 63
           K C+ HG  RRK+ RRI   I+  + I+ +TIL++WAIL+P+KPRFILQDATVY FNVS 
Sbjct: 2   KDCENHGHSRRKLIRRIFWSIIFVLFIIFLTILLIWAILQPSKPRFILQDATVYAFNVSG 61

Query: 64  --PNVLTSSFQVTISSRNPNDRIGIYYDKLDLYATYHSQQITYKTSLPTTYQGHKEINVW 121
             PN+LTS+FQ+T+SSRNPN++IGIYYD+LD+YATY SQQIT+ TS+P TYQGHK++++W
Sbjct: 62  NPPNLLTSNFQITLSSRNPNNKIGIYYDRLDVYATYRSQQITFPTSIPPTYQGHKDVDIW 121

Query: 122 SPYVYGNAVPVAPYNAVSLTQDQSSGIIPLMFKIDGRVRWKVGTFITGKYHLYVRCPAYI 181
           SP+VYG +VP+AP+N VSL  D+ +G++ L+ + DGRVRWKVGTFITGKYHL+V+CPAYI
Sbjct: 122 SPFVYGTSVPIAPFNGVSLDTDKDNGVVLLIIRADGRVRWKVGTFITGKYHLHVKCPAYI 181

Query: 182 NFGDRQAGTAVGNNAVKYQLVQSCSVSV 209
           NFG++  G  VG+NAVKY    SCSVSV
Sbjct: 182 NFGNKANGVIVGDNAVKYTFTTSCSVSV 209

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356534536|ref|XP_003535809.1| PREDICTED: uncharacterized protein LOC100788592 [Glycine max]

 Score =  297 bits (760), Expect = 2e-78,   Method: Compositional matrix adjust.
 Identities = 131/209 (62%), Positives = 171/209 (81%)

Query: 1   MSEKVCDKHGCKRRKIFRRIIAGILIFILIVLITILIVWAILRPTKPRFILQDATVYVFN 60
           MS K C+ H  K+RKIFR++   +++F+ IVL+TIL++WAILRPTKP F LQD TVY FN
Sbjct: 1   MSVKECEHHKGKKRKIFRQVFWCLVVFLFIVLVTILLIWAILRPTKPTFTLQDVTVYAFN 60

Query: 61  VSNPNVLTSSFQVTISSRNPNDRIGIYYDKLDLYATYHSQQITYKTSLPTTYQGHKEINV 120
            +  N LTS+FQVT+ SRNPNDRIG+YYD+L+ + TY SQQ+TY+T++P TYQGHKEINV
Sbjct: 61  ATVANFLTSNFQVTLISRNPNDRIGVYYDRLETFVTYRSQQVTYRTAIPPTYQGHKEINV 120

Query: 121 WSPYVYGNAVPVAPYNAVSLTQDQSSGIIPLMFKIDGRVRWKVGTFITGKYHLYVRCPAY 180
           WSP+VYG  +PVAP+N + L+QDQS+G + +  + +GRVRWKVGTFI+G+YHLYVRCPA+
Sbjct: 121 WSPFVYGTNIPVAPFNFLGLSQDQSNGNVLVTIRAEGRVRWKVGTFISGRYHLYVRCPAF 180

Query: 181 INFGDRQAGTAVGNNAVKYQLVQSCSVSV 209
           I+FG R  G  VG NA+K+Q++Q CSVSV
Sbjct: 181 ISFGPRSNGIVVGENAIKFQIIQRCSVSV 209

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|78214842|gb|ABB36604.1| hairpin-induced 1-like protein NHL18B [Brassica napus]

 Score =  296 bits (759), Expect = 3e-78,   Method: Compositional matrix adjust.
 Identities = 134/207 (64%), Positives = 166/207 (80%)

Query: 3   EKVCDKHGCKRRKIFRRIIAGILIFILIVLITILIVWAILRPTKPRFILQDATVYVFNVS 62
            K C  HG  +    RRI A ++ FI+IVLITI +VW ILRPTKPRFILQDATV+ FN+S
Sbjct: 2   SKDCGNHGGGKEAAVRRICAAVIAFIIIVLITIFLVWVILRPTKPRFILQDATVFAFNLS 61

Query: 63  NPNVLTSSFQVTISSRNPNDRIGIYYDKLDLYATYHSQQITYKTSLPTTYQGHKEINVWS 122
            PN+LTS+FQ+T +SRNPN +IGIYYD+L +YATY +QQIT +T++P TYQGHKE NVWS
Sbjct: 62  QPNLLTSNFQITFASRNPNSKIGIYYDRLHVYATYRNQQITLRTAIPPTYQGHKEDNVWS 121

Query: 123 PYVYGNAVPVAPYNAVSLTQDQSSGIIPLMFKIDGRVRWKVGTFITGKYHLYVRCPAYIN 182
           P+VYG AVP+APYN+V+L  +Q  G++ LM + DGRVRWKVGT ITGKYH++VRCPA IN
Sbjct: 122 PFVYGTAVPIAPYNSVALGDEQGHGLVQLMIRADGRVRWKVGTLITGKYHIHVRCPALIN 181

Query: 183 FGDRQAGTAVGNNAVKYQLVQSCSVSV 209
            G++ AG  VG+NAVKY LV  CSV+V
Sbjct: 182 LGNKAAGVIVGDNAVKYTLVTKCSVNV 208

Source: Brassica napus

Species: Brassica napus

Genus: Brassica

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388519979|gb|AFK48051.1| unknown [Medicago truncatula]

 Score =  295 bits (755), Expect = 7e-78,   Method: Compositional matrix adjust.
 Identities = 135/210 (64%), Positives = 173/210 (82%), Gaps = 1/210 (0%)

Query: 1   MSEKVCDKHGCKRRKIFRRIIAGILIFILIVLITILIVWAILRPTKPRFILQDATVYVFN 60
           MS K C+ H  K+ K FR+I  GI+IF+ IVL+TILI+WA+L+P+KP FILQD TVY FN
Sbjct: 1   MSVKECNHHKGKKHKRFRKIFWGIIIFLFIVLVTILIIWAVLKPSKPSFILQDVTVYAFN 60

Query: 61  VSNPNVLTSSFQVTISSRNPNDRIGIYYDKLDLYATYHSQQITYKTSLPTTYQGHKEINV 120
            + PN LTS+FQVT+SSRNPND+IGIYYD+LD Y TY SQQITY+T++P +YQ HKE++V
Sbjct: 61  ATVPNFLTSNFQVTVSSRNPNDKIGIYYDRLDSYVTYRSQQITYRTAIPPSYQEHKEVDV 120

Query: 121 WSPYVYGNAVPVAPYNAVSLTQDQSSGIIPLMFKIDGRVRWKVGTFITGKYHLYVRCPAY 180
           WSP+VYG  VPVAPYN+V+L+QDQ +G + ++ K DGRVRWKVG FI+G YH++VRCPA+
Sbjct: 121 WSPFVYGTNVPVAPYNSVALSQDQDNGNVLVVVKFDGRVRWKVGAFISGHYHIFVRCPAF 180

Query: 181 INFGDRQAGTAVGNN-AVKYQLVQSCSVSV 209
           I FG R  G +VG++ AVKYQ+VQ C+VSV
Sbjct: 181 ITFGPRSNGISVGDSGAVKYQIVQRCTVSV 210

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|312282849|dbj|BAJ34290.1| unnamed protein product [Thellungiella halophila]

 Score =  294 bits (753), Expect = 1e-77,   Method: Compositional matrix adjust.
 Identities = 133/207 (64%), Positives = 165/207 (79%)

Query: 3   EKVCDKHGCKRRKIFRRIIAGILIFILIVLITILIVWAILRPTKPRFILQDATVYVFNVS 62
            K C  HG  +    RRI   ++ FI+IVLITI +VW ILRPTKPRFILQDATV+ FN+S
Sbjct: 2   SKDCGNHGGGKEVAVRRICGAVIAFIIIVLITIFLVWVILRPTKPRFILQDATVFAFNLS 61

Query: 63  NPNVLTSSFQVTISSRNPNDRIGIYYDKLDLYATYHSQQITYKTSLPTTYQGHKEINVWS 122
            PN+LTS+FQ+T +SRNPN +IGIYYD+L +YATY +QQIT +T++P TYQGHKE NVWS
Sbjct: 62  QPNLLTSNFQITFASRNPNSKIGIYYDRLHVYATYRNQQITLRTAIPPTYQGHKEDNVWS 121

Query: 123 PYVYGNAVPVAPYNAVSLTQDQSSGIIPLMFKIDGRVRWKVGTFITGKYHLYVRCPAYIN 182
           P+VYG +VP+APYN+V+L  +Q  G + LM + DGRVRWKVGT ITGKYHL+VRCPA+IN
Sbjct: 122 PFVYGTSVPIAPYNSVALGDEQGRGFVQLMIRADGRVRWKVGTLITGKYHLHVRCPAFIN 181

Query: 183 FGDRQAGTAVGNNAVKYQLVQSCSVSV 209
            G++ AG  VG+NAVKY LV  CSV+V
Sbjct: 182 LGNKAAGVLVGDNAVKYTLVTKCSVNV 208

Source: Thellungiella halophila

Species: Eutrema halophilum

Genus: Eutrema

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|226498084|ref|NP_001146876.1| VAMP protein SEC22 [Zea mays] gi|78214840|gb|ABB36603.1| hairpin-induced 1-like protein NHL18A [Brassica napus] gi|195604574|gb|ACG24117.1| VAMP protein SEC22 [Zea mays]

 Score =  294 bits (752), Expect = 2e-77,   Method: Compositional matrix adjust.
 Identities = 132/207 (63%), Positives = 166/207 (80%)

Query: 3   EKVCDKHGCKRRKIFRRIIAGILIFILIVLITILIVWAILRPTKPRFILQDATVYVFNVS 62
            K C  HG  +    RRI A ++ FI+IVLITI +VW ILRPTKPRFILQ+ATV+ FN+S
Sbjct: 2   SKDCGNHGGGKEAAVRRICAAVIAFIIIVLITIFLVWVILRPTKPRFILQEATVFAFNLS 61

Query: 63  NPNVLTSSFQVTISSRNPNDRIGIYYDKLDLYATYHSQQITYKTSLPTTYQGHKEINVWS 122
            PN+LT++FQ+T +SRNPN +IGIYYD+L +YATY +QQIT +T++P TYQGHKE NVWS
Sbjct: 62  QPNLLTTNFQITFASRNPNSKIGIYYDRLHVYATYRNQQITLRTAIPPTYQGHKEDNVWS 121

Query: 123 PYVYGNAVPVAPYNAVSLTQDQSSGIIPLMFKIDGRVRWKVGTFITGKYHLYVRCPAYIN 182
           P+VYG AVP+APYN+V+L  +Q  G++ LM + DGRVRWKVGT ITGKYH++VRCPA IN
Sbjct: 122 PFVYGTAVPIAPYNSVALGDEQGHGLVQLMIRADGRVRWKVGTLITGKYHIHVRCPALIN 181

Query: 183 FGDRQAGTAVGNNAVKYQLVQSCSVSV 209
            G++ AG  VG+NAVKY LV  CSV+V
Sbjct: 182 LGNKAAGVIVGDNAVKYTLVTKCSVNV 208

Source: Zea mays

Species: Zea mays

Genus: Zea

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|15231227|ref|NP_190815.1| late embryogenesis abundant hydroxyproline-rich glycoprotein [Arabidopsis thaliana] gi|4886280|emb|CAB43430.1| putative protein [Arabidopsis thaliana] gi|19423892|gb|AAL87268.1| unknown protein [Arabidopsis thaliana] gi|21281064|gb|AAM45089.1| unknown protein [Arabidopsis thaliana] gi|21617965|gb|AAM67015.1| putative harpin-induced protein [Arabidopsis thaliana] gi|332645428|gb|AEE78949.1| late embryogenesis abundant hydroxyproline-rich glycoprotein [Arabidopsis thaliana]

 Score =  290 bits (741), Expect = 3e-76,   Method: Compositional matrix adjust.
 Identities = 130/207 (62%), Positives = 166/207 (80%)

Query: 3   EKVCDKHGCKRRKIFRRIIAGILIFILIVLITILIVWAILRPTKPRFILQDATVYVFNVS 62
            K C  HG  +  + R++ A I+ FI+IVLITI +VW ILRPTKPRF+LQDATVY FN+S
Sbjct: 2   SKDCGNHGGGKEVVVRKLCAAIIAFIVIVLITIFLVWVILRPTKPRFVLQDATVYAFNLS 61

Query: 63  NPNVLTSSFQVTISSRNPNDRIGIYYDKLDLYATYHSQQITYKTSLPTTYQGHKEINVWS 122
            PN+LTS+FQVTI+SRNPN +IGIYYD+L +YATY +QQIT +T++P TYQGHKE+NVWS
Sbjct: 62  QPNLLTSNFQVTIASRNPNSKIGIYYDRLHVYATYMNQQITLRTAIPPTYQGHKEVNVWS 121

Query: 123 PYVYGNAVPVAPYNAVSLTQDQSSGIIPLMFKIDGRVRWKVGTFITGKYHLYVRCPAYIN 182
           P+VYG AVP+APYN+V+L +++  G + LM + DG VRWKV T ITGKYH++VRC A+IN
Sbjct: 122 PFVYGTAVPIAPYNSVALGEEKDRGFVGLMIRADGTVRWKVRTLITGKYHIHVRCQAFIN 181

Query: 183 FGDRQAGTAVGNNAVKYQLVQSCSVSV 209
            G++ AG  VG+NAVKY L   CSV+V
Sbjct: 182 LGNKAAGVLVGDNAVKYTLANKCSVNV 208

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	209
TAIR|locus:2098368	209	NHL1 "AT3G11660" [Arabidopsis	0.985	0.985	0.586	4.5e-66
TAIR|locus:2039210	210	NHL12 "AT2G35960" [Arabidopsis	0.799	0.795	0.676	8.8e-63
TAIR|locus:2079879	208	AT3G52470 [Arabidopsis thalian	0.799	0.802	0.664	3e-62
TAIR|locus:2164315	207	AT5G06330 "AT5G06330" [Arabido	0.779	0.787	0.680	2.5e-58
TAIR|locus:2039200	211	AT2G35970 "AT2G35970" [Arabido	0.794	0.786	0.608	7e-54
TAIR|locus:2095685	206	AT3G44220 "AT3G44220" [Arabido	0.985	1.0	0.497	1.9e-53
TAIR|locus:2136887	211	NHL22 "AT4G09590" [Arabidopsis	0.794	0.786	0.596	6.3e-53
TAIR|locus:504956450	210	AT5G22200 "AT5G22200" [Arabido	0.779	0.776	0.554	1.1e-48
TAIR|locus:2164092	213	AT5G53730 "AT5G53730" [Arabido	0.674	0.661	0.433	1.8e-30
TAIR|locus:2125157	227	AT4G01410 "AT4G01410" [Arabido	0.703	0.647	0.394	7.3e-27

TAIR|locus:2098368 NHL1 "AT3G11660" [Arabidopsis thaliana (taxid:3702)]

 Score = 672 (241.6 bits), Expect = 4.5e-66, P = 4.5e-66
 Identities = 122/208 (58%), Positives = 154/208 (74%)

Query:     4 KVCDKHGCKRRKXXXXXXXXXXXXXXXXXXXXXXXXXXXRPTKPRFILQDATVYVFNVSN 63
             K C+ HG  RRK                           +P+KPRFILQDATVY FNVS 
Sbjct:     2 KDCENHGHSRRKLIRRIFWSIIFVLFIIFLTILLIWAILQPSKPRFILQDATVYAFNVSG 61

Query:    64 --PNVLTSSFQVTISSRNPNDRIGIYYDKLDLYATYHSQQITYKTSLPTTYQGHKEINVW 121
               PN+LTS+FQ+T+SSRNPN++IGIYYD+LD+YATY SQQIT+ TS+P TYQGHK++++W
Sbjct:    62 NPPNLLTSNFQITLSSRNPNNKIGIYYDRLDVYATYRSQQITFPTSIPPTYQGHKDVDIW 121

Query:   122 SPYVYGNAVPVAPYNAVSLTQDQSSGIIPLMFKIDGRVRWKVGTFITGKYHLYVRCPAYI 181
             SP+VYG +VP+AP+N VSL  D+ +G++ L+ + DGRVRWKVGTFITGKYHL+V+CPAYI
Sbjct:   122 SPFVYGTSVPIAPFNGVSLDTDKDNGVVLLIIRADGRVRWKVGTFITGKYHLHVKCPAYI 181

Query:   182 NFGDRQAGTAVGNNAVKYQLVQSCSVSV 209
             NFG++  G  VG+NAVKY    SCSVSV
Sbjct:   182 NFGNKANGVIVGDNAVKYTFTTSCSVSV 209

GO:0003674 "molecular_function" evidence=ND

GO:0005886 "plasma membrane" evidence=ISM

GO:0051607 "defense response to virus" evidence=IEP

TAIR|locus:2039210 NHL12 "AT2G35960" [Arabidopsis thaliana (taxid:3702)]

 Score = 641 (230.7 bits), Expect = 8.8e-63, P = 8.8e-63
 Identities = 113/167 (67%), Positives = 140/167 (83%)

Query:    43 RPTKPRFILQDATVYVFNVSNPNVLTSSFQVTISSRNPNDRIGIYYDKLDLYATYHSQQI 102
             +PTKPRFILQDATVY FN+S PN+LTS+FQ+TI+SRN N RIGIYYD+L +YATY +QQI
Sbjct:    44 QPTKPRFILQDATVYAFNLSQPNLLTSNFQITIASRNRNSRIGIYYDRLHVYATYRNQQI 103

Query:   103 TYKTSLPTTYQGHKEINVWSPYVYGNAVPVAPYNAVSLTQDQSSGIIPLMFKIDGRVRWK 162
             T +T++P TYQGHKE NVWSP+VYGN+VP+AP+NAV+L  +Q+ G + L+ + DGRVRWK
Sbjct:   104 TLRTAIPPTYQGHKEDNVWSPFVYGNSVPIAPFNAVALGDEQNRGFVTLIIRADGRVRWK 163

Query:   163 VGTFITGKYHLYVRCPAYINFGDRQAGTAVGNNAVKYQLVQSCSVSV 209
             VGT ITGKYHL+VRC A+IN  D+ AG  VG NAVKY L+  CSV+V
Sbjct:   164 VGTLITGKYHLHVRCQAFINLADKAAGVHVGENAVKYMLINKCSVNV 210

GO:0003674 "molecular_function" evidence=ND

GO:0005886 "plasma membrane" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0000023 "maltose metabolic process" evidence=RCA

GO:0019252 "starch biosynthetic process" evidence=RCA

TAIR|locus:2079879 AT3G52470 [Arabidopsis thaliana (taxid:3702)]

 Score = 636 (228.9 bits), Expect = 3.0e-62, P = 3.0e-62
 Identities = 111/167 (66%), Positives = 140/167 (83%)

Query:    43 RPTKPRFILQDATVYVFNVSNPNVLTSSFQVTISSRNPNDRIGIYYDKLDLYATYHSQQI 102
             RPTKPRF+LQDATVY FN+S PN+LTS+FQVTI+SRNPN +IGIYYD+L +YATY +QQI
Sbjct:    42 RPTKPRFVLQDATVYAFNLSQPNLLTSNFQVTIASRNPNSKIGIYYDRLHVYATYMNQQI 101

Query:   103 TYKTSLPTTYQGHKEINVWSPYVYGNAVPVAPYNAVSLTQDQSSGIIPLMFKIDGRVRWK 162
             T +T++P TYQGHKE+NVWSP+VYG AVP+APYN+V+L +++  G + LM + DG VRWK
Sbjct:   102 TLRTAIPPTYQGHKEVNVWSPFVYGTAVPIAPYNSVALGEEKDRGFVGLMIRADGTVRWK 161

Query:   163 VGTFITGKYHLYVRCPAYINFGDRQAGTAVGNNAVKYQLVQSCSVSV 209
             V T ITGKYH++VRC A+IN G++ AG  VG+NAVKY L   CSV+V
Sbjct:   162 VRTLITGKYHIHVRCQAFINLGNKAAGVLVGDNAVKYTLANKCSVNV 208

GO:0005886 "plasma membrane" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0009506 "plasmodesma" evidence=IDA

TAIR|locus:2164315 AT5G06330 "AT5G06330" [Arabidopsis thaliana (taxid:3702)]

 Score = 599 (215.9 bits), Expect = 2.5e-58, P = 2.5e-58
 Identities = 115/169 (68%), Positives = 136/169 (80%)

Query:    43 RPTKPRFILQDATVYVFNVSN--PNVLTSSFQVTISSRNPNDRIGIYYDKLDLYATYHSQ 100
             +P+KPRF+LQDATV+ FNVS   PN+LTS+FQ T+SSRNPND+IGIYYD+LD+YA+Y SQ
Sbjct:    43 QPSKPRFVLQDATVFNFNVSGNPPNLLTSNFQFTLSSRNPNDKIGIYYDRLDVYASYRSQ 102

Query:   101 QITYKTSLPTTYQGHKEINVWSPYVYGNAVPVAPYNAVSLTQDQSSGIIPLMFKIDGRVR 160
             QIT  + + TTYQGHKE+NVWSP+V G +VPVAPYNA  L QD SSG I LM  +DGRVR
Sbjct:   103 QITLPSPMLTTYQGHKEVNVWSPFVGGYSVPVAPYNAFYLDQDHSSGAIMLMLHLDGRVR 162

Query:   161 WKVGTFITGKYHLYVRCPAYINFGDRQAGTAVGNNAVKYQLVQSCSVSV 209
             WKVG+FITGKYHL+VRC A INFG   AG  VG    KY L ++CSVSV
Sbjct:   163 WKVGSFITGKYHLHVRCHALINFGSSAAGVIVG----KYMLTETCSVSV 207

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2039200 AT2G35970 "AT2G35970" [Arabidopsis thaliana (taxid:3702)]

 Score = 557 (201.1 bits), Expect = 7.0e-54, P = 7.0e-54
 Identities = 101/166 (60%), Positives = 123/166 (74%)

Query:    43 RPTKPRFILQDATVYVFNVSNPNVLTSSFQVTISSRNPNDRIGIYYDKLDLYATYHSQQI 102
             +P KP FILQD TVY FN+S PN+LTS FQ+TI+SRN N  IGIYYD L  YA+Y +QQI
Sbjct:    45 QPKKPEFILQDTTVYAFNLSQPNLLTSKFQITIASRNRNSNIGIYYDHLHAYASYRNQQI 104

Query:   103 TYKTSLPTTYQGHKEINVWSPYVYGNAVPVAPYNAVSLTQDQSSGIIPLMFKIDGRVRWK 162
             T  + LP TYQ HKE +VWSP +YGN VP+AP+NAV+L  +Q+SG+  L   +DGRVRWK
Sbjct:   105 TLASDLPPTYQRHKENSVWSPLLYGNQVPIAPFNAVALGDEQNSGVFTLTICVDGRVRWK 164

Query:   163 VGTFITGKYHLYVRCPAYINFGDRQAGTAVGNNAVKYQLVQSCSVS 208
             VGT   G YHL+VRC A+IN  D+ AG  VG N VKY L+  CSV+
Sbjct:   165 VGTLTIGNYHLHVRCQAFINQADKAAGVHVGENTVKYTLINKCSVN 210

GO:0003674 "molecular_function" evidence=ND

GO:0005886 "plasma membrane" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2095685 AT3G44220 "AT3G44220" [Arabidopsis thaliana (taxid:3702)]

 Score = 553 (199.7 bits), Expect = 1.9e-53, P = 1.9e-53
 Identities = 104/209 (49%), Positives = 137/209 (65%)

Query:     1 MSEKVCDKHGCKRRKXXXXXXXXXXXXXXXXXXXXXXXXXXXRPTKPRFILQDATVYVFN 60
             M+EK C+ H  +  K                            P  PRF+LQDAT+Y FN
Sbjct:     1 MTEKECEHHHDEDEKMRKRIGALVLGFLAAVLFVVFLVWAILHPHGPRFVLQDATIYAFN 60

Query:    61 VSNPNVLTSSFQVTISSRNPNDRIGIYYDKLDLYATYHSQQITYKTSLPTTYQGHKEINV 120
             VS PN LTS+ QVT+SSRNPND+IGI+YD+LD+YA+Y +QQ+T  T LP TYQGH ++ +
Sbjct:    61 VSQPNYLTSNLQVTLSSRNPNDKIGIFYDRLDIYASYRNQQVTLATLLPATYQGHLDVTI 120

Query:   121 WSPYVYGNAVPVAPYNAVSLTQDQSSGIIPLMFKIDGRVRWKVGTFITGKYHLYVRCPAY 180
             WSP++YG  VPVAPY + +L+QD ++G++ L  KIDG VRWKVGT+++G+Y L+V CPAY
Sbjct:   121 WSPFLYGTTVPVAPYFSPALSQDLTAGMVLLNIKIDGWVRWKVGTWVSGRYRLHVNCPAY 180

Query:   181 INFGDRQAGTAVGNNAVKYQLVQSCSVSV 209
             I      +G      AVKYQLVQ C+V V
Sbjct:   181 ITLAGHFSGDGP---AVKYQLVQRCAVDV 206

GO:0003674 "molecular_function" evidence=ND

GO:0005737 "cytoplasm" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2136887 NHL22 "AT4G09590" [Arabidopsis thaliana (taxid:3702)]

 Score = 548 (198.0 bits), Expect = 6.3e-53, P = 6.3e-53
 Identities = 99/166 (59%), Positives = 122/166 (73%)

Query:    43 RPTKPRFILQDATVYVFNVSNPNVLTSSFQVTISSRNPNDRIGIYYDKLDLYATYHSQQI 102
             +P  P FILQD TVY FN+S PN+LTS FQ+TI+SRN N  IGIYYD L  YA+Y +QQI
Sbjct:    45 QPKNPEFILQDTTVYAFNLSQPNLLTSKFQITIASRNRNSNIGIYYDHLHAYASYRNQQI 104

Query:   103 TYKTSLPTTYQGHKEINVWSPYVYGNAVPVAPYNAVSLTQDQSSGIIPLMFKIDGRVRWK 162
             T  + LP TYQ HKE +VWSP +YGN VP+AP+NAV+L  +Q+SG+  L   +DG+VRWK
Sbjct:   105 TLASDLPPTYQRHKEDSVWSPLLYGNQVPIAPFNAVALGDEQNSGVFTLTICVDGQVRWK 164

Query:   163 VGTFITGKYHLYVRCPAYINFGDRQAGTAVGNNAVKYQLVQSCSVS 208
             VGT   G YHL+VRC A+IN  D+ AG  VG N VKY L+  CSV+
Sbjct:   165 VGTLTIGNYHLHVRCQAFINQADKAAGVHVGENTVKYTLINKCSVN 210

GO:0003674 "molecular_function" evidence=ND

GO:0005886 "plasma membrane" evidence=ISM

GO:0009615 "response to virus" evidence=IEP

TAIR|locus:504956450 AT5G22200 "AT5G22200" [Arabidopsis thaliana (taxid:3702)]

 Score = 508 (183.9 bits), Expect = 1.1e-48, P = 1.1e-48
 Identities = 92/166 (55%), Positives = 124/166 (74%)

Query:    44 PTKPRFILQDATVYVFNVSNPNVLTSSFQVTISSRNPNDRIGIYYDKLDLYATYHSQQIT 103
             P  PRF+LQD T+  FNVS PN L+S+ QVT+SSRNPND+IGI+YD+LD+Y TY +Q++T
Sbjct:    48 PHGPRFVLQDVTINDFNVSQPNFLSSNLQVTVSSRNPNDKIGIFYDRLDIYVTYRNQEVT 107

Query:   104 YKTSLPTTYQGHKEINVWSPYVYGNAVPVAPYNAVSLTQDQSSGIIPLMFKIDGRVRWKV 163
                 LP+TYQGH E+ VWSP++ G+AVPVAPY + +L +D  +G++ L  KIDG VRWKV
Sbjct:   108 LARLLPSTYQGHLEVTVWSPFLIGSAVPVAPYLSSALNEDLFAGLVLLNIKIDGWVRWKV 167

Query:   164 GTFITGKYHLYVRCPAYINFGDRQAGTAVGNNAVKYQLVQSCSVSV 209
             G++++G Y L+V CPA+I    +  GT     A+KYQLVQ C+V V
Sbjct:   168 GSWVSGSYRLHVNCPAFITVTGKLTGTGP---AIKYQLVQRCAVDV 210

GO:0003674 "molecular_function" evidence=ND

GO:0005739 "mitochondrion" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0009505 "plant-type cell wall" evidence=IDA

GO:0009506 "plasmodesma" evidence=IDA

TAIR|locus:2164092 AT5G53730 "AT5G53730" [Arabidopsis thaliana (taxid:3702)]

 Score = 336 (123.3 bits), Expect = 1.8e-30, P = 1.8e-30
 Identities = 62/143 (43%), Positives = 97/143 (67%)

Query:    44 PTKPRFILQDATVYVFNV--SNPNVLTSSFQVTISSRNPNDRIGIYYDKLDLYATYHSQQ 101
             P +P F L +A +Y  N+  S+ ++L SS Q+T+ S+NPN ++GIYYDKL +YA Y  QQ
Sbjct:    51 PERPEFSLTEADIYSLNLTTSSTHLLNSSVQLTLFSKNPNKKVGIYYDKLLVYAAYRGQQ 110

Query:   102 ITYKTSLPTTYQGHKEINVWSPYVYGNAVPVAPYNAVSLTQDQSSGIIPLMFKIDGRVRW 161
             IT + SLP  YQ H+EIN+ + ++ G  +PVA      +++++S+G I +  K+DG++RW
Sbjct:   111 ITSEASLPPFYQSHEEINLLTAFLQGTELPVAQSFGYQISRERSTGKIIIGMKMDGKLRW 170

Query:   162 KVGTFITGKYHLYVRCPAYINFG 184
             K+GT+++G Y   V C A + FG
Sbjct:   171 KIGTWVSGAYRFNVNCLAIVAFG 193

GO:0003674 "molecular_function" evidence=ND

GO:0005886 "plasma membrane" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2125157 AT4G01410 "AT4G01410" [Arabidopsis thaliana (taxid:3702)]

 Score = 302 (111.4 bits), Expect = 7.3e-27, P = 7.3e-27
 Identities = 58/147 (39%), Positives = 84/147 (57%)

Query:    43 RPTKPRFILQDATVYVFNVSNPNVLTSSFQVTISSRNPNDRIGIYYDKLDLYATYHSQQI 102
             RP KPR  +  A +Y  N + P ++++S Q ++ +RNPN R+ I+YDKL +Y TY  Q I
Sbjct:    67 RPHKPRLTVVGAAIYDLNFTAPPLISTSVQFSVLARNPNRRVSIHYDKLSMYVTYKDQII 126

Query:   103 TYKTSLPTTYQGHKEINVWSPYVYGNAVPVAPYNAVSLTQDQSSGIIPLMFKIDGRVRWK 162
             T    LP    GHK   V +P + GN +PV+P  A  L  D++ G++ +   I GR+RWK
Sbjct:   127 TPPLPLPPLRLGHKSTVVIAPVMGGNGIPVSPEVANGLKNDEAYGVVLMRVVIFGRLRWK 186

Query:   163 VGTFITGKYHLYVRCPAYINFGDRQAG 189
              G   TG+Y  Y RC  ++ F     G
Sbjct:   187 AGAIKTGRYGFYARCDVWLRFNPSSNG 213

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

GO:0005886 "plasma membrane" evidence=IDA

GO:0009506 "plasmodesma" evidence=IDA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	NHL1	NHL1; encodes a protein whose sequence is similar to tobacco hairpin-induced gene (HIN1) and Arabidopsis non-race specific disease resistance gene (NDR1). Expression of this gene is induced by cucumber mosaic virus. Localization of the gene product is similar to that of NHL3 (plasma membrane) but it is yet inconclusive. (209 aa)
		(Arabidopsis thaliana)
Predicted Functional Partners:
	NHL8	NHL8; protein binding / zinc ion binding; Encodes a protein whose sequence is similar to tobacc [...] (688 aa)							•		0.883
	AT1G63750	ATP binding / nucleoside-triphosphatase/ nucleotide binding / protein binding; ATP binding / nu [...] (1131 aa)							•		0.599
	LCR69	LCR69 (LOW-MOLECULAR-WEIGHT CYSTEINE-RICH 69); peptidase inhibitor; Predicted to encode a PR (p [...] (77 aa)							•		0.465
	AT4G26120	ankyrin repeat family protein / BTB/POZ domain-containing protein; ankyrin repeat family protei [...] (600 aa)							•		0.462
	AT4G29750	RNA binding; RNA binding; FUNCTIONS IN- RNA binding; LOCATED IN- chloroplast; EXPRESSED IN- 22 [...] (776 aa)							•		0.440
	AT1G30290	unknown protein; unknown protein (806 aa)							•		0.440
	AT1G66290	F-box family protein; F-box family protein; FUNCTIONS IN- molecular_function unknown; INVOLVED [...] (453 aa)							•		0.438
	GLIP7	GLIP7; carboxylesterase/ lipase; Contains lipase signature motif and GDSL domain. (364 aa)							•		0.436
	GLIP6	GLIP6; carboxylesterase/ lipase; Contains lipase signature motif and GDSL domain. (362 aa)							•		0.436
	GLIP2	GLIP2; arylesterase/ carboxylesterase/ lipase; Encodes a lipase, has in vitro lipase activity w [...] (436 aa)							•		0.429

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	209
pfam03168	98	pfam03168, LEA_2, Late embryogenesis abundant prot	4e-07

>gnl|CDD|217400 pfam03168, LEA_2, Late embryogenesis abundant protein

 Score = 46.6 bits (111), Expect = 4e-07
 Identities = 23/104 (22%), Positives = 37/104 (35%), Gaps = 8/104 (7%)

Query: 74  TISSRNPNDRIGIYYDKLDLYATYHSQQITYKTSLPTTYQGHKEINVWSPYVYGNAVPVA 133
           T+  RNPN    + YD L    +Y+ Q++   TS                      V V+
Sbjct: 1   TLRVRNPNS-FPLPYDGLSYDLSYNGQELASGTSPQPGTVPAGGTTTLEV-----PVTVS 54

Query: 134 PYNAVSLTQDQSSGIIPLMFKIDGRVRWKVGTFITGKYHLYVRC 177
             +   L +D  +  + L      R R KVG  + G   + +  
Sbjct: 55  LDDLARLLKDLLA--VGLELPYTLRGRLKVGGPVKGSRTVPLSK 96

Different types of LEA proteins are expressed at different stages of late embryogenesis in higher plant seed embryos and under conditions of dehydration stress. The function of these proteins is unknown. This family represents a group of LEA proteins that appear to be distinct from those in pfam02987. The family DUF1511, pfam07427, has now been merged into this family. Length = 98

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	209
PLN03160	219	uncharacterized protein; Provisional	100.0
PF03168	101	LEA_2: Late embryogenesis abundant protein; InterP	99.46
smart00769	100	WHy Water Stress and Hypersensitive response.	98.49
PF07092	238	DUF1356: Protein of unknown function (DUF1356); In	98.41
COG5608	161	LEA14-like dessication related protein [Defense me	97.25
PF12751	387	Vac7: Vacuolar segregation subunit 7; InterPro: IP	97.25
PLN03160	219	uncharacterized protein; Provisional	94.85

>PLN03160 uncharacterized protein; Provisional

Probab=100.00  E-value=2.3e-36  Score=246.69  Aligned_cols=183  Identities=16%  Similarity=0.187  Sum_probs=155.2

Q ss_pred             CcccceeehhHHHHHHHHHHHHHhheeeEEEEeCCCCEEEEeeeEEEEEeeCC----CCeEeEEEEEEEEEeCCCCeEEE
Q 028399           11 CKRRKIFRRIIAGILIFILIVLITILIVWAILRPTKPRFILQDATVYVFNVSN----PNVLTSSFQVTISSRNPNDRIGI   86 (209)
Q Consensus        11 ~~r~~~~~~~~~~~~~~l~l~gi~~li~~lv~rP~~P~~~v~~~~v~~~~~~~----~~~l~~~l~~~l~v~NpN~~~~i   86 (209)
                      .+|++|++||++++.+++++++++++++|++||||+|+|+|+++++++|++++    +..+|++++++++++|||. ++|
T Consensus        31 ~~r~~~~~c~~~~~a~~l~l~~v~~~l~~~vfrPk~P~~~v~~v~l~~~~~~~~~~~~~~~n~tl~~~v~v~NPN~-~~~  109 (219)
T PLN03160         31 TRRRNCIKCCGCITATLLILATTILVLVFTVFRVKDPVIKMNGVTVTKLELINNTTLRPGTNITLIADVSVKNPNV-ASF  109 (219)
T ss_pred             cccccceEEHHHHHHHHHHHHHHHHheeeEEEEccCCeEEEEEEEEeeeeeccCCCCceeEEEEEEEEEEEECCCc-eeE
Confidence            36677777777777667777778888899999999999999999999999864    2468888999999999996 899


Q ss_pred             EEeceEEEEEECCeEeeccccccceeecCCceEEEeEEEEEeeeecChhhHHHHHhhhcCCeEEEEEEEEEEEEEEEEEE
Q 028399           87 YYDKLDLYATYHSQQITYKTSLPTTYQGHKEINVWSPYVYGNAVPVAPYNAVSLTQDQSSGIIPLMFKIDGRVRWKVGTF  166 (209)
Q Consensus        87 ~Y~~~~~~v~Y~g~~lg~~~~vp~f~q~~~~t~~~~~~~~~~~v~l~~~~~~~l~~d~~~g~v~l~v~v~~~v~~k~g~~  166 (209)
                      +|+++++.++|+|+.+| .+.+|+|+|++++++.+.+++......+.++  .+|.+|.++|.++|+++++.++++++|++
T Consensus       110 ~Y~~~~~~v~Y~g~~vG-~a~~p~g~~~ar~T~~l~~tv~~~~~~~~~~--~~L~~D~~~G~v~l~~~~~v~gkVkv~~i  186 (219)
T PLN03160        110 KYSNTTTTIYYGGTVVG-EARTPPGKAKARRTMRMNVTVDIIPDKILSV--PGLLTDISSGLLNMNSYTRIGGKVKILKI  186 (219)
T ss_pred             EEcCeEEEEEECCEEEE-EEEcCCcccCCCCeEEEEEEEEEEeceeccc--hhHHHHhhCCeEEEEEEEEEEEEEEEEEE
Confidence            99999999999999999 5999999999999999999876655443332  47889999999999999999999999999


Q ss_pred             EEeeEEEEEEeeEEEEecCCCCcccccCccccccccCcceeeC
Q 028399          167 ITGKYHLYVRCPAYINFGDRQAGTAVGNNAVKYQLVQSCSVSV  209 (209)
Q Consensus       167 ~~~~~~~~v~C~l~v~~~~~~~g~~~~~~~~~~~~~~~C~v~~  209 (209)
                      .+++++++++|++.+++++.           .++ .++|+.++
T Consensus       187 ~k~~v~~~v~C~v~V~~~~~-----------~i~-~~~C~~~~  217 (219)
T PLN03160        187 IKKHVVVKMNCTMTVNITSQ-----------AIQ-GQKCKRHV  217 (219)
T ss_pred             EEEEEEEEEEeEEEEECCCC-----------EEe-ccEecccc
Confidence            88999999999999987321           333 57898764

>PF03168 LEA_2: Late embryogenesis abundant protein; InterPro: IPR004864 Different types of LEA proteins are expressed at different stages of late embryogenesis in higher plant seed embryos and under conditions of dehydration stress [, ]

Probab=99.46  E-value=4.1e-13  Score=96.06  Aligned_cols=98  Identities=29%  Similarity=0.353  Sum_probs=72.6

Q ss_pred             EEEEeCCCCeEEEEEeceEEEEEECCeEeeccccccceeecCCceEEEeEEEEEeeeecChhhHHHHHhhhcCCeEEEEE
Q 028399           74 TISSRNPNDRIGIYYDKLDLYATYHSQQITYKTSLPTTYQGHKEINVWSPYVYGNAVPVAPYNAVSLTQDQSSGIIPLMF  153 (209)
Q Consensus        74 ~l~v~NpN~~~~i~Y~~~~~~v~Y~g~~lg~~~~vp~f~q~~~~t~~~~~~~~~~~v~l~~~~~~~l~~d~~~g~v~l~v  153 (209)
                      +|+++|||. ++++|+++++.++|.|..+|.....|+|+|++++++.+.+.+..+...+    .+.+.++. +|..++++
T Consensus         1 ~l~v~NPN~-~~i~~~~~~~~v~~~g~~v~~~~~~~~~~i~~~~~~~v~~~v~~~~~~l----~~~l~~~~-~~~~~~~v   74 (101)
T PF03168_consen    1 TLSVRNPNS-FGIRYDSIEYDVYYNGQRVGTGGSLPPFTIPARSSTTVPVPVSVDYSDL----PRLLKDLL-AGRVPFDV   74 (101)
T ss_dssp             EEEEEESSS-S-EEEEEEEEEEEESSSEEEEEEECE-EEESSSCEEEEEEEEEEEHHHH----HHHHHHHH-HTTSCEEE
T ss_pred             CEEEECCCc-eeEEEeCEEEEEEECCEEEECccccCCeEECCCCcEEEEEEEEEcHHHH----HHHHHhhh-ccccceEE
Confidence            588999997 9999999999999999999944788999999999999888776655443    44566666 66778888


Q ss_pred             EEEEEEEEEE-EEEEEeeEEEEEEe
Q 028399          154 KIDGRVRWKV-GTFITGKYHLYVRC  177 (209)
Q Consensus       154 ~v~~~v~~k~-g~~~~~~~~~~v~C  177 (209)
                      .+++++++++ +.....++.+.++|
T Consensus        75 ~~~~~g~~~v~~~~~~~~~~v~~~~   99 (101)
T PF03168_consen   75 TYRIRGTFKVLGTPIFGSVRVPVSC   99 (101)
T ss_dssp             EEEEEEEEE-EE-TTTSCEEEEEEE
T ss_pred             EEEEEEEEEEcccceeeeEEEeEEe
Confidence            8888888884 43322345555555

The function of these proteins is unknown. ; PDB: 3BUT_A 1XO8_A 1YYC_A.

>smart00769 WHy Water Stress and Hypersensitive response

Probab=98.49  E-value=2.2e-06  Score=61.56  Aligned_cols=83  Identities=17%  Similarity=0.138  Sum_probs=63.6

Q ss_pred             CeEeEEEEEEEEEeCCCCeEEEEEeceEEEEEECCeEeecccccc-ceeecCCceEEEeEEEEEeeeecChhhHHHHHhh
Q 028399           65 NVLTSSFQVTISSRNPNDRIGIYYDKLDLYATYHSQQITYKTSLP-TTYQGHKEINVWSPYVYGNAVPVAPYNAVSLTQD  143 (209)
Q Consensus        65 ~~l~~~l~~~l~v~NpN~~~~i~Y~~~~~~v~Y~g~~lg~~~~vp-~f~q~~~~t~~~~~~~~~~~v~l~~~~~~~l~~d  143 (209)
                      ..++.++.+.+.++|||. +++.|++++..++|.|..+| ++..+ ++..++++++.+.+.+.. +..    ....+..+
T Consensus        11 ~~~~~~~~l~l~v~NPN~-~~l~~~~~~y~l~~~g~~v~-~g~~~~~~~ipa~~~~~v~v~~~~-~~~----~~~~~~~~   83 (100)
T smart00769       11 SGLEIEIVLKVKVQNPNP-FPIPVNGLSYDLYLNGVELG-SGEIPDSGTLPGNGRTVLDVPVTV-NLF----LAEALIWH   83 (100)
T ss_pred             cceEEEEEEEEEEECCCC-CccccccEEEEEEECCEEEE-EEEcCCCcEECCCCcEEEEEEEEe-ehh----HhHHHHHh
Confidence            458889999999999995 89999999999999999999 57775 799999999998887765 222    22344455


Q ss_pred             hcCCe-EEEEEE
Q 028399          144 QSSGI-IPLMFK  154 (209)
Q Consensus       144 ~~~g~-v~l~v~  154 (209)
                      +.+|. ++.+++
T Consensus        84 l~~~~~~~y~l~   95 (100)
T smart00769       84 IANGEEIPYRLD   95 (100)
T ss_pred             hccCCCccEEEE
Confidence            55553 444443

>PF07092 DUF1356: Protein of unknown function (DUF1356); InterPro: IPR009790 This family consists of several hypothetical mammalian proteins of around 250 residues in length

Probab=98.41  E-value=8.5e-05  Score=61.03  Aligned_cols=102  Identities=15%  Similarity=0.164  Sum_probs=67.3

Q ss_pred             hhHHHHHHHHHHHHHhheeeEEEEeCCCCEEEEeeeEEEEEeeCC-CCeEeEEEEEEEEEeCCCCeEEEEEeceEEEEEE
Q 028399           19 RIIAGILIFILIVLITILIVWAILRPTKPRFILQDATVYVFNVSN-PNVLTSSFQVTISSRNPNDRIGIYYDKLDLYATY   97 (209)
Q Consensus        19 ~~~~~~~~~l~l~gi~~li~~lv~rP~~P~~~v~~~~v~~~~~~~-~~~l~~~l~~~l~v~NpN~~~~i~Y~~~~~~v~Y   97 (209)
                      +.++++++-+++.|++++.    +=|+...++-.++......++. ...+..++.-.|.+.||| +.++.-.++.+++.|
T Consensus        77 yV~~sV~~CLl~~~L~iFF----LfPRsV~v~~~gv~s~~V~f~~~~~~v~l~itn~lNIsN~N-Fy~V~Vt~~s~qv~~  151 (238)
T PF07092_consen   77 YVFLSVLLCLLLSGLVIFF----LFPRSVTVSPVGVKSVTVSFNPDKSTVQLNITNTLNISNPN-FYPVTVTNLSIQVLY  151 (238)
T ss_pred             EeeHHHHHHHHHHHheEEE----EeCcEEEEecCcEEEEEEEEeCCCCEEEEEEEEEEEccCCC-EEEEEEEeEEEEEEE
Confidence            3333333344444443333    3388666664444444333332 246888999999999999 799999999999999


Q ss_pred             CCeEeecccccc-ceeecCCceEEEeEEEE
Q 028399           98 HSQQITYKTSLP-TTYQGHKEINVWSPYVY  126 (209)
Q Consensus        98 ~g~~lg~~~~vp-~f~q~~~~t~~~~~~~~  126 (209)
                      ....+| ++... .-..+|++.+.+...+.
T Consensus       152 ~~~VVG-~~~~~~~~~I~Prs~~q~~~tV~  180 (238)
T PF07092_consen  152 MKTVVG-KGKNSNITVIGPRSSKQVNYTVK  180 (238)
T ss_pred             EEeEEe-eeEecceEEecccCCceEEEEee
Confidence            999999 46554 34667777776666554

The function of this family is unknown.

>COG5608 LEA14-like dessication related protein [Defense mechanisms]

Probab=97.25  E-value=0.036  Score=42.52  Aligned_cols=104  Identities=14%  Similarity=0.018  Sum_probs=72.1

Q ss_pred             CCCEEEEeeeEEEEEeeCCCCeEeEEEEEEEEEeCCCCeEEEEEeceEEEEEECCeEeeccccccceeecCCceEEEeEE
Q 028399           45 TKPRFILQDATVYVFNVSNPNVLTSSFQVTISSRNPNDRIGIYYDKLDLYATYHSQQITYKTSLPTTYQGHKEINVWSPY  124 (209)
Q Consensus        45 ~~P~~~v~~~~v~~~~~~~~~~l~~~l~~~l~v~NpN~~~~i~Y~~~~~~v~Y~g~~lg~~~~vp~f~q~~~~t~~~~~~  124 (209)
                      +.|.+.--.+..-....     ....+-.++.++|||. +++-...++..++-.|..+|......++..+|++...+.+.
T Consensus        31 ~~p~ve~~ka~wGkvt~-----s~~EiV~t~KiyNPN~-fPipVtgl~y~vymN~Iki~eG~~~k~~~v~p~S~~tvdv~  104 (161)
T COG5608          31 KKPGVESMKAKWGKVTN-----SETEIVGTLKIYNPNP-FPIPVTGLQYAVYMNDIKIGEGEILKGTTVPPNSRETVDVP  104 (161)
T ss_pred             CCCCceEEEEEEEEEec-----cceEEEEEEEecCCCC-cceeeeceEEEEEEcceEeeccccccceEECCCCeEEEEEE
Confidence            56777766666655432     4457888999999995 89999999999999999999534456799999999998887


Q ss_pred             EEEeeeecChhhHHHHHhhhcCCeE-EEEEEEEEE
Q 028399          125 VYGNAVPVAPYNAVSLTQDQSSGII-PLMFKIDGR  158 (209)
Q Consensus       125 ~~~~~v~l~~~~~~~l~~d~~~g~v-~l~v~v~~~  158 (209)
                      +..+.-.+.    +.+...+.+|.- +.++++.+.
T Consensus       105 l~~d~~~~k----e~w~~hi~ngErs~Ir~~i~~~  135 (161)
T COG5608         105 LRLDNSKIK----EWWVTHIENGERSTIRVRIKGV  135 (161)
T ss_pred             EEEehHHHH----HHHHHHhhccCcccEEEEEEEE
Confidence            766543332    233434555532 444443333

>PF12751 Vac7: Vacuolar segregation subunit 7; InterPro: IPR024260 Vac7 is localised at the vacuole membrane, a location which is consistent with its involvement in vacuole morphology and inheritance []

Probab=97.25  E-value=0.00091  Score=58.47  Aligned_cols=85  Identities=21%  Similarity=0.208  Sum_probs=52.5

Q ss_pred             cccceeehhHHHHHHHHH--HHHHhheeeEEEEeCCCCEEEEeeeEEEEEeeCCCCeEeEEEEEEEEEeCCCCeEEEEEe
Q 028399           12 KRRKIFRRIIAGILIFIL--IVLITILIVWAILRPTKPRFILQDATVYVFNVSNPNVLTSSFQVTISSRNPNDRIGIYYD   89 (209)
Q Consensus        12 ~r~~~~~~~~~~~~~~l~--l~gi~~li~~lv~rP~~P~~~v~~~~v~~~~~~~~~~l~~~l~~~l~v~NpN~~~~i~Y~   89 (209)
                      +|+.|.|..+|+++.+++  ++|.++..++..-|   |--.|+=..|.+.=.   +.-..-|++++.+.||| .+.|..+
T Consensus       295 ~r~~~~r~~~c~~~~i~~lL~ig~~~gFv~AttK---pL~~v~v~~I~NVla---S~qELmfdl~V~A~NPn-~~~V~I~  367 (387)
T PF12751_consen  295 QRSWFSRFASCIYLSILLLLVIGFAIGFVFATTK---PLTDVQVVSIQNVLA---SEQELMFDLTVEAFNPN-WFTVTID  367 (387)
T ss_pred             cccHHhhhhHHHHHHHHHHHHHHHHHHhhhhcCc---ccccceEEEeeeeee---ccceEEEeeEEEEECCC-eEEEEec
Confidence            566666665554443322  23333332333344   433444444444333   23566799999999999 6999999


Q ss_pred             ceEEEEEECCeEee
Q 028399           90 KLDLYATYHSQQIT  103 (209)
Q Consensus        90 ~~~~~v~Y~g~~lg  103 (209)
                      +.++.|+-+-..+|
T Consensus       368 d~dldIFAKS~yvg  381 (387)
T PF12751_consen  368 DMDLDIFAKSRYVG  381 (387)
T ss_pred             cceeeeEecCCccC
Confidence            99999998877776

Vac7 has been shown to function as an upstream regulator of the Fab1 lipid kinase pathway []. The Fab1 lipid pathway is important for correct regulation of membrane trafficking events.

>PLN03160 uncharacterized protein; Provisional

Probab=94.85  E-value=0.55  Score=38.46  Aligned_cols=104  Identities=14%  Similarity=0.172  Sum_probs=61.3

Q ss_pred             cCCcccceeehhHHHHHHHHHHHHHhheeeEEEEeCC--CCEEEEeeeEEE-------EEeeC--CC-CeEeEEEEEEEE
Q 028399            9 HGCKRRKIFRRIIAGILIFILIVLITILIVWAILRPT--KPRFILQDATVY-------VFNVS--NP-NVLTSSFQVTIS   76 (209)
Q Consensus         9 ~~~~r~~~~~~~~~~~~~~l~l~gi~~li~~lv~rP~--~P~~~v~~~~v~-------~~~~~--~~-~~l~~~l~~~l~   76 (209)
                      .++++.+||.|+|.+++++++++++++++++=-=.|+  --.+++.+..+.       .++++  .. ..-|.|. +.+.
T Consensus        32 ~r~~~~~c~~~~~a~~l~l~~v~~~l~~~vfrPk~P~~~v~~v~l~~~~~~~~~~~~~~~n~tl~~~v~v~NPN~-~~~~  110 (219)
T PLN03160         32 RRRNCIKCCGCITATLLILATTILVLVFTVFRVKDPVIKMNGVTVTKLELINNTTLRPGTNITLIADVSVKNPNV-ASFK  110 (219)
T ss_pred             ccccceEEHHHHHHHHHHHHHHHHheeeEEEEccCCeEEEEEEEEeeeeeccCCCCceeEEEEEEEEEEEECCCc-eeEE
Confidence            5778889999999998888888788877776667774  344555554432       12211  00 0112233 3344


Q ss_pred             EeCCCCeEEEEEeceEEEEEECCeEeeccccccceeecCCceEE
Q 028399           77 SRNPNDRIGIYYDKLDLYATYHSQQITYKTSLPTTYQGHKEINV  120 (209)
Q Consensus        77 v~NpN~~~~i~Y~~~~~~v~Y~g~~lg~~~~vp~f~q~~~~t~~  120 (209)
                      -.|  ..+.++|++..+.-    ..+. .+..|++.+..-+.+.
T Consensus       111 Y~~--~~~~v~Y~g~~vG~----a~~p-~g~~~ar~T~~l~~tv  147 (219)
T PLN03160        111 YSN--TTTTIYYGGTVVGE----ARTP-PGKAKARRTMRMNVTV  147 (219)
T ss_pred             EcC--eEEEEEECCEEEEE----EEcC-CcccCCCCeEEEEEEE
Confidence            433  25889998865432    3344 3556666666666654

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	209
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-04

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 41.0 bits (95), Expect = 2e-04
 Identities = 31/207 (14%), Positives = 56/207 (27%), Gaps = 70/207 (33%)

Query: 14  RKIFRRIIAGILIF---ILIVLITILIVWAILRPTKPRFILQDATVYVFNVSNPNVLTSS 70
           RK+F R+     +F     I  I + ++W  +  +    ++     Y             
Sbjct: 372 RKMFDRLS----VFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKY------------- 414

Query: 71  FQVTISSRNPNDRIGIYYDKLDLYATYHSQQITYKTSLPTTYQGHKEINVWSPYVYGNAV 130
              ++  + P +                S  +  K  L   Y  H+ I            
Sbjct: 415 ---SLVEKQPKE--STIS--------IPSIYLELKVKLENEYALHRSI------------ 449

Query: 131 PVAPYNAVSLTQDQSSGIIPLMFKIDGRVRWKVGTFITGKYHLYVRCPA---------YI 181
            V  YN        S  +IP    +D      +G      +HL               ++
Sbjct: 450 -VDHYNI--PKTFDSDDLIPP--YLDQYFYSHIG------HHLKNIEHPERMTLFRMVFL 498

Query: 182 NFG-----DRQAGTAVGNNAVKYQLVQ 203
           +F       R   TA   +      +Q
Sbjct: 499 DFRFLEQKIRHDSTAWNASGSILNTLQ 525

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	209
1yyc_A	174	LEA protein, putative late embryogenesis abundant	98.09
1xo8_A	151	AT1G01470; structural genomics, protein structure	97.88
3but_A	136	Uncharacterized protein AF_0446; lipid binding pro	97.83

>1yyc_A LEA protein, putative late embryogenesis abundant protein; structural genomics, protein structure initiative, CESG; NMR {Arabidopsis thaliana}

Probab=98.09  E-value=2.1e-05  Score=61.01  Aligned_cols=99  Identities=17%  Similarity=0.134  Sum_probs=75.4

Q ss_pred             CCCEEEEeeeEEEEEeeCCCCeEeEEEEEEEEEeCCCCeEEEEEeceEEEEEECCeEeecccccc-ceeecCCceEEEeE
Q 028399           45 TKPRFILQDATVYVFNVSNPNVLTSSFQVTISSRNPNDRIGIYYDKLDLYATYHSQQITYKTSLP-TTYQGHKEINVWSP  123 (209)
Q Consensus        45 ~~P~~~v~~~~v~~~~~~~~~~l~~~l~~~l~v~NpN~~~~i~Y~~~~~~v~Y~g~~lg~~~~vp-~f~q~~~~t~~~~~  123 (209)
                      +.|++++.++++.+++.     ..+.+.+.|+++|||. +++.+..++..+.-.|..++. +..| ++..++++++.+.+
T Consensus        43 ~~PeV~v~~v~~~~~~l-----~~~~~~l~LrV~NPN~-~pLpi~gi~Y~L~vnG~~las-G~s~~~~tIpa~g~~~v~V  115 (174)
T 1yyc_A           43 PTPEATVDDVDFKGVTR-----DGVDYHAKVSVKNPYS-QSIPICQISYILKSATRTIAS-GTIPDPGSLVGSGTTVLDV  115 (174)
T ss_dssp             CCCEEEEEEEEEEEECS-----SSEEEEEEEEEEECSS-SCCBCCSEEEEEEESSSCEEE-EEESCCCBCCSSEEEEEEE
T ss_pred             CCCEEEEEEeEEecccc-----ceEEEEEEEEEECCCC-CCccccceEEEEEECCEEEEE-EecCCCceECCCCcEEEEE
Confidence            67999999999988765     3478999999999995 899999999999999999994 7665 58889999999988


Q ss_pred             EEEEeeeecChhhHHHHHhhhcCC-eEEEEEEE
Q 028399          124 YVYGNAVPVAPYNAVSLTQDQSSG-IIPLMFKI  155 (209)
Q Consensus       124 ~~~~~~v~l~~~~~~~l~~d~~~g-~v~l~v~v  155 (209)
                      .+....     .....+.+++..+ .++.++++
T Consensus       116 pv~v~~-----~~l~~~~~~l~~~~~i~Y~L~g  143 (174)
T 1yyc_A          116 PVKVAY-----SIAVSLMKDMCTDWDIDYQLDI  143 (174)
T ss_dssp             EEEESH-----HHHHHTCCCCCSSEEECEEEEE
T ss_pred             EEEEEH-----HHHHHHHHhcCCCCccceEEEE
Confidence            776532     2223334454333 45555444

>1xo8_A AT1G01470; structural genomics, protein structure initiative, center for eukaryotic structural genomics, CESG, unknown function; NMR {Arabidopsis thaliana} SCOP: b.1.25.1

Probab=97.88  E-value=1.5e-05  Score=60.59  Aligned_cols=101  Identities=16%  Similarity=0.093  Sum_probs=73.9

Q ss_pred             CCCEEEEeeeEEEEEeeCCCCeEeEEEEEEEEEeCCCCeEEEEEeceEEEEEECCeEeecccccc-ceeecCCceEEEeE
Q 028399           45 TKPRFILQDATVYVFNVSNPNVLTSSFQVTISSRNPNDRIGIYYDKLDLYATYHSQQITYKTSLP-TTYQGHKEINVWSP  123 (209)
Q Consensus        45 ~~P~~~v~~~~v~~~~~~~~~~l~~~l~~~l~v~NpN~~~~i~Y~~~~~~v~Y~g~~lg~~~~vp-~f~q~~~~t~~~~~  123 (209)
                      +.|++++.++++.+++.     ....+.+.++++|||. +++.+..++..++-.|..+++ +..+ ++..++++++.+.+
T Consensus        20 ~~P~v~v~~v~~~~~~~-----~~~~~~~~l~V~NPN~-~~lpi~gi~y~l~vng~~las-G~~~~~~~ipa~g~~~v~v   92 (151)
T 1xo8_A           20 PKPEGSVTDVDLKDVNR-----DSVEYLAKVSVTNPYS-HSIPICEISFTFHSAGREIGK-GKIPDPGSLKAKDMTALDI   92 (151)
T ss_dssp             CSCCCBCSEEEECCCTT-----TEECEEEEEEEECSSS-SCCCCEEEEEEEESSSSCEEE-EEEEECCCCSSSSEEEEEE
T ss_pred             CCCEEEEEEeEEeccCc-----ceeEEEEEEEEECCCC-CCcccccEEEEEEECCEEEEE-EecCCCcEECCCCcEEEEE
Confidence            57899999888876544     4567999999999995 899999999999999999994 6665 58889999998887


Q ss_pred             EEEEeeeecChhhHHHHHhhhc-CCeEEEEEEEEE
Q 028399          124 YVYGNAVPVAPYNAVSLTQDQS-SGIIPLMFKIDG  157 (209)
Q Consensus       124 ~~~~~~v~l~~~~~~~l~~d~~-~g~v~l~v~v~~  157 (209)
                      .+....     ....++..++. .+.++.++++..
T Consensus        93 pv~v~~-----~~l~~~~~~l~~~~~i~Y~l~g~l  122 (151)
T 1xo8_A           93 PVVVPY-----SILFNLARDVGVDWDIDYELQIGL  122 (151)
T ss_dssp             CCCEEH-----HHHHHHHHHHHHHSEEEEEEEEEE
T ss_pred             EEEEEH-----HHHHHHHHhcccCCcccEEEEEEE
Confidence            665432     22223333432 345666654433

>3but_A Uncharacterized protein AF_0446; lipid binding protein, beta barrel, protein structure initia PSI-2; 1.91A {Archaeoglobus fulgidus dsm 4304}

Probab=97.83  E-value=0.00028  Score=52.55  Aligned_cols=68  Identities=6%  Similarity=-0.059  Sum_probs=56.0

Q ss_pred             EeEEEEEEEEEeCCCCeEEEEEeceEEEEEECCeEeeccccccceeecCCceEEEeEEEEEeeeecChh
Q 028399           67 LTSSFQVTISSRNPNDRIGIYYDKLDLYATYHSQQITYKTSLPTTYQGHKEINVWSPYVYGNAVPVAPY  135 (209)
Q Consensus        67 l~~~l~~~l~v~NpN~~~~i~Y~~~~~~v~Y~g~~lg~~~~vp~f~q~~~~t~~~~~~~~~~~v~l~~~  135 (209)
                      -...+.+.|.++|||. +++.++.++..++..|.++|.......+..++.+++.+.+.+..+...+...
T Consensus        16 ~~t~~~~~l~V~NPN~-~~l~i~gl~y~v~lng~~la~G~s~~~~~I~~~g~~~v~v~~~i~~~~l~~~   83 (136)
T 3but_A           16 SQTEIVALAKVRNEDV-VPIVVSGYHYTIEMNGVKVADGYENSPVTVKPASATTLKFSLRLNNSFLREW   83 (136)
T ss_dssp             SEEEEEEEEEEECCSS-SCEEEEEEEEEEEETTEEEEEEEECCCEEECTTCEEEEEEEEEEEHHHHTTH
T ss_pred             cEEEEEEEEEEeCCCC-cceeeeceEEEEEECCEEEEeeeecCceEECCCCcEEEEEEEEEchHHhHHH
Confidence            4567999999999995 8999999999999999999953335789999999888888887775555443

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	209
d1xo8a_	151	Putative dessication related protein LEA14 {Thale	98.1

>d1xo8a_ b.1.25.1 (A:) Putative dessication related protein LEA14 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: LEA14-like
family: LEA14-like
domain: Putative dessication related protein LEA14
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=98.10  E-value=1.6e-06  Score=64.17  Aligned_cols=77  Identities=16%  Similarity=0.115  Sum_probs=64.3

Q ss_pred             CCCCEEEEeeeEEEEEeeCCCCeEeEEEEEEEEEeCCCCeEEEEEeceEEEEEECCeEeecccccc-ceeecCCceEEEe
Q 028399           44 PTKPRFILQDATVYVFNVSNPNVLTSSFQVTISSRNPNDRIGIYYDKLDLYATYHSQQITYKTSLP-TTYQGHKEINVWS  122 (209)
Q Consensus        44 P~~P~~~v~~~~v~~~~~~~~~~l~~~l~~~l~v~NpN~~~~i~Y~~~~~~v~Y~g~~lg~~~~vp-~f~q~~~~t~~~~  122 (209)
                      =+.|++++.++++.++..     ..+++.+.++++|||. +++.+..++..++..|..++. +..+ ++..++++++.+.
T Consensus        19 ~~kPev~l~~v~i~~v~~-----~~~~l~~~l~V~NPN~-~~l~i~~l~y~l~~~g~~ia~-G~~~~~~~ipa~~~~~v~   91 (151)
T d1xo8a_          19 IPKPEGSVTDVDLKDVNR-----DSVEYLAKVSVTNPYS-HSIPICEISFTFHSAGREIGK-GKIPDPGSLKAKDMTALD   91 (151)
T ss_dssp             CCSCCCBCSEEEECCCTT-----TEECEEEEEEEECSSS-SCCCCEEEEEEEESSSSCEEE-EEEEECCCCSSSSEEEEE
T ss_pred             CCCCeEEEEEEEeeeccc-----ceEEEEEEEEEECCCC-CceeeeeEEEEEEECCEEEEe-EecCCCcEEcCCCcEEEE
Confidence            357999999998887654     4567999999999995 899999999999999999994 6664 5888899999988


Q ss_pred             EEEEE
Q 028399          123 PYVYG  127 (209)
Q Consensus       123 ~~~~~  127 (209)
                      +.+..
T Consensus        92 vpv~v   96 (151)
T d1xo8a_          92 IPVVV   96 (151)
T ss_dssp             ECCCE
T ss_pred             EEEEE
Confidence            86654