Citrus Sinensis ID: 028403

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------21
Protein Sequence
MASLLSVTANSLSFPSTPFKGNVKTLMPKPPSSLCVPLKVQQRNKPPQLTVLNQAASASASAIVGSGPVTNVRFRLNNLGPQPGSRKRGKRKGRGIAAGQGNSCGFGMRGQKSRSGPGVRKGFEGGQMPLYRRIPKLRGIAGGMHAGLPKYVPVNLKDIEAAGFLEGDEVSLETLKKKGLINPSGRERKLPLKVQDTIIVVLFVCFHIP
Secondary Structure (PSIPRED)
cccccccccccccccccccccccccccccccccccccccEEEEcccccEEEEEccccccccccccccccccccEEccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEEEEHHHHHHHccccccEEcHHHHHHccccccccccccEEEEEEEEEEEEEEEEEEcc
Secondary Structure Prediction (SSPRO)
ccccEEccccccccccccccccccEEcccccccccccccEEcccccccEEEEEcccHHHHHHHcccccccccEEEHccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHccccccccccccccccEEEEEEHHHHHHcccccccEccHHHHHHccccccccccccccEEEEEcccEEEEEEEEcc
Coil and Loop (DISEMBL)
MASLLSVTanslsfpstpfkgnvktlmpkppsslcvplkvqqrnkppqltvLNQAASASasaivgsgpvtnvrfrlnnlgpqpgsrkrgkrkgrgiaagqgnscgfgmrgqksrsgpgvrkgfeggqmplyrripklrgiaggmhaglpkyvpvnlkdieaagflegdeVSLETLKkkglinpsgrerklplkvqDTIIVVLFVCFHIP
Flexible Loop (DISEMBL)
MASLLSVTanslsfpstpfkgnvKTLMPKPPSSLCVPLKVQQRNKPPQLTVLNQAASASASAIVGSGPVTNVRfrlnnlgpqpgsrkrgkrkgrgiaagqgnscgfgmrgqksrsgpgvrkgfeggqmplYRRIPKLRGIAGGMHAGLPKYVPVNLKDIEAAGFLEGDEVSletlkkkglinpsgrerklplkvqdtIIVVLFVCFHIP
Low Complexity Region (SEG)
MASLLSVTANSLSFPSTPFKGNVKTLMPKPPSSLCVPLKVQQRNKPPQLTVLNQaasasasaIVGSGPVTNVRFRLNNLGPQPGSrkrgkrkgrgIAAGQGNSCGFGMRGQKSRSGPGVRKGFEGGQMPLYRRIPKLRGIAGGMHAGLPKYVPVNLKDIEAAGFLEGDEVSLETLKKKGLINPSGRERKLPLKVQDTIIVVLFVCFHIP
Disordered region (IsUnstruct)
*******************************************************************************************************************************MPLYRRIPKLRGIAGGMHAGLPKYVPVNLKDIEAAGFLEGDEVSLETLKKKGLI*******KLPLKVQDTIIVVLFVCFHI*
Disordered Region (DISOPRED)
***LLSVTANSLSFPSTPFKGNVKTLMPKPPSSLCV**************V***************************L***************GIAAGQGNSCGFGMRGQKSRSGPGVRKGFEGGQMPLYRRIPKLRGIAGGMHAGLPKYVPVNLKDIEAAGFLEGDEVSLETLKKKGLINPSGRERKLPLKVQDTIIVVLFVCFHI*
Disordered Region (DISEMBL)
********ANSLSFPSTPFKGNVKTLMPKPPSSLCVPLKVQQRNKPPQLTVLNQAASASASAIVGSGPVTNVRFRLNNLGP**************IAAGQGNSCGFGM**********VRKGFEGGQMPLYRRIPKLRGIAGGMHAGLPKYVPVNLKDIEAAGFLEGDEVSLETLKKKGLINPSGRERKLPLKVQDTIIVVLFVCFHIP
Disordered Region (DISPRO)
***LLSVTANSLSFPSTPFKGNVKTLMPKPPSSLCVPLKVQQRNKPPQLTVLNQAASASASAIV******************************************************VRKGFEGGQMPLYRRIPKLRGIAGGMHAGLPKYVPVNLKDIEAAGFLEGDEVSLETLKKKGLINPSGRERKLPLKVQDTIIVVLFVCFHIP
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MASLLSVTANSLSFPSTPFKGNVKTLMPKPPSSLCVPLKVQQRNKPPQLTVLNQAASASASAIVGSGPVTNVRFRLNNLGPQPGSRKRGKRKGRGIAAGQGNSCGFGMRGQKSRSGPGVRKGFEGGQMPLYRRIPKLRGIAGGMHAGLPKYVPVNLKDIEAAGFLEGDEVSLETLKKKGLINPSGRERKLPLKVQDTIIVVLFVCFHIP
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	209	2.2.26 [Sep-21-2011]
P31165	258	50S ribosomal protein L15	N/A	no	0.875	0.709	0.704	3e-65
P25873	277	50S ribosomal protein L15	yes	no	0.956	0.722	0.598	3e-62
Q5N0U8	147	50S ribosomal protein L15	yes	no	0.521	0.741	0.532	2e-24
P31160	147	50S ribosomal protein L15	yes	no	0.521	0.741	0.532	2e-24
A3PF30	152	50S ribosomal protein L15	yes	no	0.526	0.723	0.537	5e-23
B7K231	159	50S ribosomal protein L15	yes	no	0.516	0.679	0.528	6e-23
Q318K1	152	50S ribosomal protein L15	yes	no	0.526	0.723	0.537	6e-23
Q7V9X9	151	50S ribosomal protein L15	yes	no	0.521	0.721	0.533	8e-23
A2BTC0	152	50S ribosomal protein L15	yes	no	0.526	0.723	0.529	1e-22
A8G744	152	50S ribosomal protein L15	yes	no	0.526	0.723	0.529	1e-22

>sp|P31165|RK15_PEA 50S ribosomal protein L15, chloroplastic (Fragment) OS=Pisum sativum GN=RPL15 PE=2 SV=1

 Score =  248 bits (632), Expect = 3e-65,   Method: Compositional matrix adjust.
 Identities = 136/193 (70%), Positives = 156/193 (80%), Gaps = 10/193 (5%)

Query: 2   ASLLSVTANSLSFPSTPFKGNVKTLMPKPPSSLCVPLKVQQRNKPPQLTVLNQAASASAS 61
           ASL+ V+  SL   ++PFKGNVKTL+ KP   LC  LK+Q+     +++V+N+AASA   
Sbjct: 4   ASLIPVS--SLPSLASPFKGNVKTLVAKP--CLCPCLKIQRTKL--RVSVVNKAASAYNV 57

Query: 62  AIVGSGPVTNVRFRLNNLGPQPGSRKRGKRKGRGIAAGQGNSCGFGMRGQKSRSGPGVRK 121
              G     NVRFRL+NLGPQPGSRKR KRKGRGIAAGQG SCGFGMRGQKSRSGPG+ +
Sbjct: 58  KSSGE----NVRFRLDNLGPQPGSRKRPKRKGRGIAAGQGASCGFGMRGQKSRSGPGIMR 113

Query: 122 GFEGGQMPLYRRIPKLRGIAGGMHAGLPKYVPVNLKDIEAAGFLEGDEVSLETLKKKGLI 181
           GFEGGQMPLYRR+PKLRGIAGGMHAGLPKYV VNL DIE AGF +G+EVSLETLK K +I
Sbjct: 114 GFEGGQMPLYRRLPKLRGIAGGMHAGLPKYVNVNLTDIENAGFQDGEEVSLETLKAKRVI 173

Query: 182 NPSGRERKLPLKV 194
           NPSGRERKLPLK+
Sbjct: 174 NPSGRERKLPLKI 186

Pisum sativum (taxid: 3888)

>sp|P25873|RK15_ARATH 50S ribosomal protein L15, chloroplastic OS=Arabidopsis thaliana GN=RPL15 PE=1 SV=2

 Score =  238 bits (606), Expect = 3e-62,   Method: Compositional matrix adjust.
 Identities = 131/219 (59%), Positives = 158/219 (72%), Gaps = 19/219 (8%)

Query: 1   MASLLSVTANSLS--------FPSTPFKGNVKTLMPKPPSSLCVPLKVQQRNKPPQ---- 48
           MA+ LS+++N L+          ST FKGNV  L   P   L + L    + +  Q    
Sbjct: 1   MATPLSISSNPLTSRHCYRLHLSSTSFKGNVSVLGANPSQILSLKLNQTLKTRNQQQFAR 60

Query: 49  -LTVLNQAASASASAIVGSGPVTNVRFRLNNLGPQPGSRKRGKRKGRGIAAGQGNSCGFG 107
            L V++Q A A++SA+V        RFRL+NLGPQPGSRK+ KRKGRGI+AGQG SCGFG
Sbjct: 61  PLVVVSQTA-ATSSAVVAP-----ERFRLDNLGPQPGSRKKQKRKGRGISAGQGASCGFG 114

Query: 108 MRGQKSRSGPGVRKGFEGGQMPLYRRIPKLRGIAGGMHAGLPKYVPVNLKDIEAAGFLEG 167
           MRGQKSRSGPG+ +GFEGGQ  LYRR+PKLRGIAGGM +GLPKY+PVN+KDIE AGF EG
Sbjct: 115 MRGQKSRSGPGIMRGFEGGQTALYRRLPKLRGIAGGMRSGLPKYLPVNIKDIETAGFQEG 174

Query: 168 DEVSLETLKKKGLINPSGRERKLPLKVQDTIIVVLFVCF 206
           DEVSLETLK+KGLINPSGRERKLPLK+  T  + + + F
Sbjct: 175 DEVSLETLKQKGLINPSGRERKLPLKILGTGELSMKLTF 213

Arabidopsis thaliana (taxid: 3702)

>sp|Q5N0U8|RL15_SYNP6 50S ribosomal protein L15 OS=Synechococcus sp. (strain ATCC 27144 / PCC 6301 / SAUG 1402/1) GN=rplO PE=3 SV=1

 Score =  112 bits (279), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 66/124 (53%), Positives = 81/124 (65%), Gaps = 15/124 (12%)

Query: 74  FRLNNLGPQPGSRKRGKRKGRGIAAGQGNSCGFGMRGQKSRSGPGVRKGFEGGQMPLYRR 133
            +L+NL PQPG++KR +R GRGIAAGQG SCGFGMRGQKSRSG   R GFEGGQMPLYRR
Sbjct: 1   MKLDNLAPQPGAKKRKRRVGRGIAAGQGASCGFGMRGQKSRSGRPTRPGFEGGQMPLYRR 60

Query: 134 IPKLRGIAGGMHAGLPK---YVPVNLKDIEAAGFLEGDEVSLETLKKKGLINPSGRERKL 190
           +PKL+      H  L     Y  VN+  +  AG   G EV+LE+L   G++     +   
Sbjct: 61  VPKLK------HFPLINRKFYTVVNVGAL--AGLAAGTEVTLESLMAVGIVT----QNDG 108

Query: 191 PLKV 194
           PLK+
Sbjct: 109 PLKI 112

Binds to the 23S rRNA.

Synechococcus sp. (strain ATCC 27144 / PCC 6301 / SAUG 1402/1) (taxid: 269084)

>sp|P31160|RL15_SYNE7 50S ribosomal protein L15 OS=Synechococcus elongatus (strain PCC 7942) GN=rplO PE=3 SV=2

 Score =  112 bits (279), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 66/124 (53%), Positives = 81/124 (65%), Gaps = 15/124 (12%)

Query: 74  FRLNNLGPQPGSRKRGKRKGRGIAAGQGNSCGFGMRGQKSRSGPGVRKGFEGGQMPLYRR 133
            +L+NL PQPG++KR +R GRGIAAGQG SCGFGMRGQKSRSG   R GFEGGQMPLYRR
Sbjct: 1   MKLDNLAPQPGAKKRKRRVGRGIAAGQGASCGFGMRGQKSRSGRPTRPGFEGGQMPLYRR 60

Query: 134 IPKLRGIAGGMHAGLPK---YVPVNLKDIEAAGFLEGDEVSLETLKKKGLINPSGRERKL 190
           +PKL+      H  L     Y  VN+  +  AG   G EV+LE+L   G++     +   
Sbjct: 61  VPKLK------HFPLINRKFYTVVNVGAL--AGLAAGTEVTLESLMAVGIVT----QNDG 108

Query: 191 PLKV 194
           PLK+
Sbjct: 109 PLKI 112

Binds to the 23S rRNA.

Synechococcus elongatus (strain PCC 7942) (taxid: 1140)

>sp|A3PF30|RL15_PROM0 50S ribosomal protein L15 OS=Prochlorococcus marinus (strain MIT 9301) GN=rplO PE=3 SV=1

 Score =  107 bits (267), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 64/119 (53%), Positives = 76/119 (63%), Gaps = 9/119 (7%)

Query: 76  LNNLGPQPGSRKRGKRKGRGIAAGQGNSCGFGMRGQKSRSGPGVRKGFEGGQMPLYRRIP 135
           LN L    GSRK+  RKGRGIAAGQG SCGFGMRGQKSRSG   R GFEGGQMPLYRR+P
Sbjct: 5   LNTLKSNSGSRKKKLRKGRGIAAGQGASCGFGMRGQKSRSGRPTRPGFEGGQMPLYRRVP 64

Query: 136 KLRGIAGGMHAGLPKYVPVNLKDIEAAGFLEGDEVSLETLKKKGLINPSGRERKLPLKV 194
           KL+            +  +NL+ +    F + D V+L++L KKGLI       K PLK+
Sbjct: 65  KLKHFE---IINQKNFSIINLEKLND--FKDNDTVNLDSLVKKGLIFKP----KFPLKI 114

Binds to the 23S rRNA.

Prochlorococcus marinus (strain MIT 9301) (taxid: 167546)

>sp|B7K231|RL15_CYAP8 50S ribosomal protein L15 OS=Cyanothece sp. (strain PCC 8801) GN=rplO PE=3 SV=1

 Score =  107 bits (267), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 66/125 (52%), Positives = 84/125 (67%), Gaps = 17/125 (13%)

Query: 74  FRLNNLGPQPGSRKRGKRKGRGIAAGQGNSCGFGMRGQKSRSGPGVRKGFEGGQMPLYRR 133
            R++ + P+ GS KR +R GRGI+AGQG SCGFGMRGQKSRSG G + GFEGGQMPLYRR
Sbjct: 1   MRIHEVTPKEGSTKRRRRVGRGISAGQGASCGFGMRGQKSRSGTGTKAGFEGGQMPLYRR 60

Query: 134 IPKLRGIAGGMHAGL--PK-YVPVNLKDIEAAGFLE-GDEVSLETLKKKGLINPSGRERK 189
           IPKL+      H  L  PK Y  +N+  +E+   LE   EV+LE+L ++G+I  +     
Sbjct: 61  IPKLK------HFPLVNPKHYTIINVGKLES---LEPNTEVTLESLMEQGIITTN----D 107

Query: 190 LPLKV 194
            PLKV
Sbjct: 108 GPLKV 112

Binds to the 23S rRNA.

Cyanothece sp. (strain PCC 8801) (taxid: 41431)

>sp|Q318K1|RL15_PROM9 50S ribosomal protein L15 OS=Prochlorococcus marinus (strain MIT 9312) GN=rplO1 PE=3 SV=1

 Score =  107 bits (267), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 64/119 (53%), Positives = 77/119 (64%), Gaps = 9/119 (7%)

Query: 76  LNNLGPQPGSRKRGKRKGRGIAAGQGNSCGFGMRGQKSRSGPGVRKGFEGGQMPLYRRIP 135
           LN L    GSRK+  RKGRGIAAGQG SCGFGMRGQKSRSG   R GFEGGQMPLYRR+P
Sbjct: 5   LNTLKSNSGSRKKKLRKGRGIAAGQGASCGFGMRGQKSRSGRPTRPGFEGGQMPLYRRVP 64

Query: 136 KLRGIAGGMHAGLPKYVPVNLKDIEAAGFLEGDEVSLETLKKKGLINPSGRERKLPLKV 194
           KL+            +  +NL  ++   F + D V+L++L KKGLI     + K PLK+
Sbjct: 65  KLKHFE---IINQKNFSIINLDKLKD--FNDNDTVNLDSLVKKGLI----FKPKFPLKI 114

Binds to the 23S rRNA.

Prochlorococcus marinus (strain MIT 9312) (taxid: 74546)

>sp|Q7V9X9|RL15_PROMA 50S ribosomal protein L15 OS=Prochlorococcus marinus (strain SARG / CCMP1375 / SS120) GN=rplO PE=3 SV=1

 Score =  107 bits (266), Expect = 8e-23,   Method: Compositional matrix adjust.
 Identities = 64/120 (53%), Positives = 77/120 (64%), Gaps = 11/120 (9%)

Query: 76  LNNLGPQPGSRKRGKRKGRGIAAGQGNSCGFGMRGQKSRSGPGVRKGFEGGQMPLYRRIP 135
           L++L P  G+RKR  RKGRGIAAGQG SCGFGMRGQKSRSG   R GFEGGQMPLYRR+P
Sbjct: 6   LDSLKPNKGARKRKTRKGRGIAAGQGASCGFGMRGQKSRSGRPTRPGFEGGQMPLYRRVP 65

Query: 136 KLRGIAGGMHAGLPKYVPVNLKDIEAAGFL-EGDEVSLETLKKKGLINPSGRERKLPLKV 194
           KL+      H  L       L ++ +   L EG  V+L++L K G++       K PLKV
Sbjct: 66  KLK------HFPLVNSKSFTLINVASLNSLKEGSTVNLDSLVKTGIVTSP----KYPLKV 115

Binds to the 23S rRNA.

Prochlorococcus marinus (strain SARG / CCMP1375 / SS120) (taxid: 167539)

>sp|A2BTC0|RL15_PROMS 50S ribosomal protein L15 OS=Prochlorococcus marinus (strain AS9601) GN=rplO PE=3 SV=1

 Score =  106 bits (265), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 63/119 (52%), Positives = 77/119 (64%), Gaps = 9/119 (7%)

Query: 76  LNNLGPQPGSRKRGKRKGRGIAAGQGNSCGFGMRGQKSRSGPGVRKGFEGGQMPLYRRIP 135
           LN L    GSRK+  RKGRGIAAGQG SCGFGMRGQKSRSG   R GFEGGQMPLYRR+P
Sbjct: 5   LNTLKSNSGSRKKKLRKGRGIAAGQGASCGFGMRGQKSRSGRPTRPGFEGGQMPLYRRVP 64

Query: 136 KLRGIAGGMHAGLPKYVPVNLKDIEAAGFLEGDEVSLETLKKKGLINPSGRERKLPLKV 194
           KL+            +  +NL+ +    F + D V++++L KKGLI     + K PLK+
Sbjct: 65  KLKHFE---IINQKNFSIINLEKLND--FKDNDTVNIDSLVKKGLI----FKPKFPLKI 114

Binds to the 23S rRNA.

Prochlorococcus marinus (strain AS9601) (taxid: 146891)

>sp|A8G744|RL15_PROM2 50S ribosomal protein L15 OS=Prochlorococcus marinus (strain MIT 9215) GN=rplO PE=3 SV=1

 Score =  106 bits (265), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 63/119 (52%), Positives = 77/119 (64%), Gaps = 9/119 (7%)

Query: 76  LNNLGPQPGSRKRGKRKGRGIAAGQGNSCGFGMRGQKSRSGPGVRKGFEGGQMPLYRRIP 135
           LN L    GSRK+  RKGRGIAAGQG SCGFGMRGQKSRSG   R GFEGGQMPLYRR+P
Sbjct: 5   LNTLKSNSGSRKKKLRKGRGIAAGQGASCGFGMRGQKSRSGRPTRPGFEGGQMPLYRRVP 64

Query: 136 KLRGIAGGMHAGLPKYVPVNLKDIEAAGFLEGDEVSLETLKKKGLINPSGRERKLPLKV 194
           KL+            +  +NL+ +    F + D V++++L KKGLI     + K PLK+
Sbjct: 65  KLKHFE---IINQKNFSIINLEKLND--FKDNDTVNIDSLVKKGLI----FKPKFPLKI 114

Binds to the 23S rRNA.

Prochlorococcus marinus (strain MIT 9215) (taxid: 93060)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	209
359472952	262	PREDICTED: 50S ribosomal protein L15, ch	0.889	0.709	0.681	1e-68
351725845	256	uncharacterized protein LOC100306183 [Gl	0.813	0.664	0.722	7e-64
400986	258	RecName: Full=50S ribosomal protein L15,	0.875	0.709	0.704	1e-63
297818112	275	hypothetical protein ARALYDRAFT_484358 [	0.942	0.716	0.619	6e-63
388521735	257	unknown [Medicago truncatula]	0.866	0.704	0.690	7e-63
189096136	257	Chain N, Homology Model For The Spinach	0.870	0.708	0.699	1e-61
388494588	256	unknown [Lotus japonicus]	0.866	0.707	0.668	1e-60
16497	277	Plastid ribosomal protein CL15 [Arabidop	0.956	0.722	0.598	1e-60
15230931	277	50S ribosomal protein L15 [Arabidopsis t	0.956	0.722	0.598	1e-60
388448	273	plastid ribosomal protein CL15 [Arabidop	0.942	0.721	0.615	9e-60

>gi|359472952|ref|XP_002279311.2| PREDICTED: 50S ribosomal protein L15, chloroplastic-like [Vitis vinifera] gi|297737813|emb|CBI27014.3| unnamed protein product [Vitis vinifera]

 Score =  265 bits (676), Expect = 1e-68,   Method: Compositional matrix adjust.
 Identities = 137/201 (68%), Positives = 160/201 (79%), Gaps = 15/201 (7%)

Query: 1   MASLLSVTANS-------LSFPSTPFKGNVKTLMPKPPSSLCVPLKVQQRNKPPQLTVLN 53
           MA+LLSV++         L  PS+PFKGNV+ L   P   L + L+V+++ +   + V +
Sbjct: 1   MAALLSVSSAPSSRTPLFLHHPSSPFKGNVRNLKANPCQFLTIKLEVKEKVRKSGVVVAS 60

Query: 54  QAASASASAIVGSGPVTNVRFRLNNLGPQPGSRKRGKRKGRGIAAGQGNSCGFGMRGQKS 113
           Q + +S         V NVRFRL+NLGPQPGSRK+ KRKGRGI+AGQGNSCGFGMRGQKS
Sbjct: 61  QGSPSSV--------VDNVRFRLDNLGPQPGSRKKAKRKGRGISAGQGNSCGFGMRGQKS 112

Query: 114 RSGPGVRKGFEGGQMPLYRRIPKLRGIAGGMHAGLPKYVPVNLKDIEAAGFLEGDEVSLE 173
           RSGPGV KGFEGGQMPLYRRIPKLRGIAGGMHAGLPKYVPVNLKDIEAAGF EG+EVSL+
Sbjct: 113 RSGPGVMKGFEGGQMPLYRRIPKLRGIAGGMHAGLPKYVPVNLKDIEAAGFQEGEEVSLD 172

Query: 174 TLKKKGLINPSGRERKLPLKV 194
           +LKKKGLINPSGRER+LPLK+
Sbjct: 173 SLKKKGLINPSGRERRLPLKI 193

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|351725845|ref|NP_001235059.1| uncharacterized protein LOC100306183 [Glycine max] gi|255627797|gb|ACU14243.1| unknown [Glycine max]

 Score =  249 bits (635), Expect = 7e-64,   Method: Compositional matrix adjust.
 Identities = 130/180 (72%), Positives = 147/180 (81%), Gaps = 10/180 (5%)

Query: 15  PSTPFKGNVKTLMPKPPSSLCVPLKVQQRNKPPQLTVLNQAASASASAIVGSGPVTNVRF 74
           P +PFKG VKTL+ KP        K+QQ    P ++V+N+AAS S+     + P   VRF
Sbjct: 16  PLSPFKGTVKTLVAKPWLK-----KIQQAR--PLISVVNKAASLSSPV---TAPSVGVRF 65

Query: 75  RLNNLGPQPGSRKRGKRKGRGIAAGQGNSCGFGMRGQKSRSGPGVRKGFEGGQMPLYRRI 134
           RL+NLGPQPGSRKR KRKGRGI+AGQG SCGFGMRGQKSRSGPGVRKGFEGGQMPLYRRI
Sbjct: 66  RLDNLGPQPGSRKRAKRKGRGISAGQGASCGFGMRGQKSRSGPGVRKGFEGGQMPLYRRI 125

Query: 135 PKLRGIAGGMHAGLPKYVPVNLKDIEAAGFLEGDEVSLETLKKKGLINPSGRERKLPLKV 194
           PKLRGIAGGMHAGLPKYV VNL+DIE A F EG+EVSLE+LK KG+INPSGRER+LPLK+
Sbjct: 126 PKLRGIAGGMHAGLPKYVHVNLRDIEDAKFKEGEEVSLESLKAKGVINPSGRERRLPLKI 185

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|400986|sp|P31165.1|RK15_PEA RecName: Full=50S ribosomal protein L15, chloroplastic; AltName: Full=CL15; Flags: Precursor gi|20867|emb|CAA77595.1| Plastid ribosomal protein CL15 [Pisum sativum]

 Score =  248 bits (632), Expect = 1e-63,   Method: Compositional matrix adjust.
 Identities = 136/193 (70%), Positives = 156/193 (80%), Gaps = 10/193 (5%)

Query: 2   ASLLSVTANSLSFPSTPFKGNVKTLMPKPPSSLCVPLKVQQRNKPPQLTVLNQAASASAS 61
           ASL+ V+  SL   ++PFKGNVKTL+ KP   LC  LK+Q+     +++V+N+AASA   
Sbjct: 4   ASLIPVS--SLPSLASPFKGNVKTLVAKP--CLCPCLKIQRTKL--RVSVVNKAASAYNV 57

Query: 62  AIVGSGPVTNVRFRLNNLGPQPGSRKRGKRKGRGIAAGQGNSCGFGMRGQKSRSGPGVRK 121
              G     NVRFRL+NLGPQPGSRKR KRKGRGIAAGQG SCGFGMRGQKSRSGPG+ +
Sbjct: 58  KSSGE----NVRFRLDNLGPQPGSRKRPKRKGRGIAAGQGASCGFGMRGQKSRSGPGIMR 113

Query: 122 GFEGGQMPLYRRIPKLRGIAGGMHAGLPKYVPVNLKDIEAAGFLEGDEVSLETLKKKGLI 181
           GFEGGQMPLYRR+PKLRGIAGGMHAGLPKYV VNL DIE AGF +G+EVSLETLK K +I
Sbjct: 114 GFEGGQMPLYRRLPKLRGIAGGMHAGLPKYVNVNLTDIENAGFQDGEEVSLETLKAKRVI 173

Query: 182 NPSGRERKLPLKV 194
           NPSGRERKLPLK+
Sbjct: 174 NPSGRERKLPLKI 186

Source: Pisum sativum

Species: Pisum sativum

Genus: Pisum

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297818112|ref|XP_002876939.1| hypothetical protein ARALYDRAFT_484358 [Arabidopsis lyrata subsp. lyrata] gi|297322777|gb|EFH53198.1| hypothetical protein ARALYDRAFT_484358 [Arabidopsis lyrata subsp. lyrata]

 Score =  246 bits (627), Expect = 6e-63,   Method: Compositional matrix adjust.
 Identities = 137/221 (61%), Positives = 159/221 (71%), Gaps = 24/221 (10%)

Query: 1   MASLLSVTANSLS--------FPSTPFKGNVKTLMPKPPSSLCVPL-------KVQQRNK 45
           MA+ LS+++N L+        FPST FKGNV  L   P   L + L       K QQ  +
Sbjct: 1   MATPLSISSNPLTSHRCYRLHFPSTSFKGNVSVLGANPSQILSLKLNQKLKTRKQQQSAR 60

Query: 46  PPQLTVLNQAASASASAIVGSGPVTNVRFRLNNLGPQPGSRKRGKRKGRGIAAGQGNSCG 105
           P  L V++QAA+ S         V   RFRL+NLGPQPGSRKR KRKGRGI+AGQG SCG
Sbjct: 61  P--LVVVSQAAATSEV-------VAPERFRLDNLGPQPGSRKRQKRKGRGISAGQGASCG 111

Query: 106 FGMRGQKSRSGPGVRKGFEGGQMPLYRRIPKLRGIAGGMHAGLPKYVPVNLKDIEAAGFL 165
           FGMRGQKSRSGPG+ +GFEGGQ  LYRR+PKLRGIAGGM +GLPKY+PVNLKDIE AGF 
Sbjct: 112 FGMRGQKSRSGPGIMRGFEGGQTALYRRLPKLRGIAGGMRSGLPKYLPVNLKDIETAGFQ 171

Query: 166 EGDEVSLETLKKKGLINPSGRERKLPLKVQDTIIVVLFVCF 206
           EGDEVSLETLK+KGLINPSGRERKLPLK+  T  + + + F
Sbjct: 172 EGDEVSLETLKQKGLINPSGRERKLPLKILGTGELSMKLTF 212

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388521735|gb|AFK48929.1| unknown [Medicago truncatula]

 Score =  245 bits (626), Expect = 7e-63,   Method: Compositional matrix adjust.
 Identities = 134/194 (69%), Positives = 155/194 (79%), Gaps = 13/194 (6%)

Query: 2   ASLLSVTANSLSFPSTPFKGNVKTLMPKPPSSLCVPLKVQQRNKPPQLTVLNQAASASAS 61
           ASL+ V+   L   ++PFKGNVKTL+ KP   LC  LK+Q+     +++V+N++ SAS  
Sbjct: 5   ASLIPVSW--LPSLASPFKGNVKTLVAKP--YLCPCLKIQRTKH--RVSVINKSVSASVQ 58

Query: 62  AIVGSGPV-TNVRFRLNNLGPQPGSRKRGKRKGRGIAAGQGNSCGFGMRGQKSRSGPGVR 120
                 P   NVRFRL+NLGPQPGSRKR KRKGRGIAAGQG SCGFGMRGQKSRSGPG+ 
Sbjct: 59  ------PAGENVRFRLDNLGPQPGSRKRAKRKGRGIAAGQGASCGFGMRGQKSRSGPGIM 112

Query: 121 KGFEGGQMPLYRRIPKLRGIAGGMHAGLPKYVPVNLKDIEAAGFLEGDEVSLETLKKKGL 180
           +GFEGGQMPLYRR+PKLRGIAGGMHAGLPKYV +NLKDIE AGF EG+EVSLETL +K +
Sbjct: 113 RGFEGGQMPLYRRLPKLRGIAGGMHAGLPKYVHINLKDIENAGFQEGEEVSLETLTEKRV 172

Query: 181 INPSGRERKLPLKV 194
           INPSGRERKL LKV
Sbjct: 173 INPSGRERKLLLKV 186

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|189096136|pdb|3BBO|N Chain N, Homology Model For The Spinach Chloroplast 50s Subunit Fitted To 9.4a Cryo-Em Map Of The 70s Chlororibosome

 Score =  241 bits (615), Expect = 1e-61,   Method: Compositional matrix adjust.
 Identities = 135/193 (69%), Positives = 155/193 (80%), Gaps = 11/193 (5%)

Query: 2   ASLLSVTANSLSFPSTPFKGNVKTLMPKPPSSLCVPLKVQQRNKPPQLTVLNQAASASAS 61
           ASL+ V+  SL   ++PFKGNVKTL+ KP   LC  LK+Q+     +++V+N+AASA   
Sbjct: 4   ASLIPVS--SLPSLASPFKGNVKTLVAKP--CLCPCLKIQRTKL--RVSVVNKAASAYNV 57

Query: 62  AIVGSGPVTNVRFRLNNLGPQPGSRKRGKRKGRGIAAGQGNSCGFGMRGQKSRSGPGVRK 121
              G     NV FRL+NLGPQPGSRKR KRKGRGIAAGQG SCGFGMRGQKSRSGPG+ +
Sbjct: 58  KSSGE----NV-FRLDNLGPQPGSRKRPKRKGRGIAAGQGASCGFGMRGQKSRSGPGIMR 112

Query: 122 GFEGGQMPLYRRIPKLRGIAGGMHAGLPKYVPVNLKDIEAAGFLEGDEVSLETLKKKGLI 181
           GFEGGQMPLYRR+PKLRGIAGGMHAGLPKYV VNL DIE AGF +G+EVSLETLK K +I
Sbjct: 113 GFEGGQMPLYRRLPKLRGIAGGMHAGLPKYVNVNLTDIENAGFQDGEEVSLETLKAKRVI 172

Query: 182 NPSGRERKLPLKV 194
           NPSGRERKLPLK+
Sbjct: 173 NPSGRERKLPLKI 185

Source: Spinacia oleracea

Species: Spinacia oleracea

Genus: Spinacia

Family: Amaranthaceae

Order: Caryophyllales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388494588|gb|AFK35360.1| unknown [Lotus japonicus]

 Score =  238 bits (607), Expect = 1e-60,   Method: Compositional matrix adjust.
 Identities = 129/193 (66%), Positives = 149/193 (77%), Gaps = 12/193 (6%)

Query: 2   ASLLSVTANSLSFPSTPFKGNVKTLMPKPPSSLCVPLKVQQRNKPPQLTVLNQAASASAS 61
           ASLL V++       +PFKG +KTL  +P    C+ +   QR +P    V + AA  S S
Sbjct: 4   ASLLPVSSWLPPPLPSPFKGTLKTLEARP----CLKI---QRPRPRVFVVTSAAAPVSVS 56

Query: 62  AIVGSGPVTNVRFRLNNLGPQPGSRKRGKRKGRGIAAGQGNSCGFGMRGQKSRSGPGVRK 121
           A     P   VRFRL+NLGPQPGSRK+ KRKGRGI+AGQG SCGFGMRGQKSRSGPGVR+
Sbjct: 57  A-----PNVGVRFRLDNLGPQPGSRKKAKRKGRGISAGQGASCGFGMRGQKSRSGPGVRR 111

Query: 122 GFEGGQMPLYRRIPKLRGIAGGMHAGLPKYVPVNLKDIEAAGFLEGDEVSLETLKKKGLI 181
           GFEGGQMPLYRRIPKLRGIAGGM AGLPKYV VNL+DIE A F +GDEVSLE+LK+KG+I
Sbjct: 112 GFEGGQMPLYRRIPKLRGIAGGMSAGLPKYVHVNLRDIEGAKFQDGDEVSLESLKEKGVI 171

Query: 182 NPSGRERKLPLKV 194
           NPSGRER+LPLK+
Sbjct: 172 NPSGRERRLPLKI 184

Source: Lotus japonicus

Species: Lotus japonicus

Genus: Lotus

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|16497|emb|CAA77593.1| Plastid ribosomal protein CL15 [Arabidopsis thaliana]

 Score =  238 bits (606), Expect = 1e-60,   Method: Compositional matrix adjust.
 Identities = 131/219 (59%), Positives = 158/219 (72%), Gaps = 19/219 (8%)

Query: 1   MASLLSVTANSLS--------FPSTPFKGNVKTLMPKPPSSLCVPLKVQQRNKPPQ---- 48
           MA+ LS+++N L+          ST FKGNV  L   P   L + L    + +  Q    
Sbjct: 1   MATPLSISSNPLTSRHCYRLHLSSTSFKGNVSVLGANPSQILSLKLNQTLKTRNQQQFAR 60

Query: 49  -LTVLNQAASASASAIVGSGPVTNVRFRLNNLGPQPGSRKRGKRKGRGIAAGQGNSCGFG 107
            L V++Q A A++SA+V        RFRL+NLGPQPGSRK+ KRKGRGI+AGQG SCGFG
Sbjct: 61  PLVVVSQTA-ATSSAVVAP-----ERFRLDNLGPQPGSRKKQKRKGRGISAGQGASCGFG 114

Query: 108 MRGQKSRSGPGVRKGFEGGQMPLYRRIPKLRGIAGGMHAGLPKYVPVNLKDIEAAGFLEG 167
           MRGQKSRSGPG+ +GFEGGQ  LYRR+PKLRGIAGGM +GLPKY+PVN+KDIE AGF EG
Sbjct: 115 MRGQKSRSGPGIMRGFEGGQTALYRRLPKLRGIAGGMRSGLPKYLPVNIKDIETAGFQEG 174

Query: 168 DEVSLETLKKKGLINPSGRERKLPLKVQDTIIVVLFVCF 206
           DEVSLETLK+KGLINPSGRERKLPLK+  T  + + + F
Sbjct: 175 DEVSLETLKQKGLINPSGRERKLPLKILGTGELSMKLTF 213

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|15230931|ref|NP_189221.1| 50S ribosomal protein L15 [Arabidopsis thaliana] gi|21431836|sp|P25873.2|RK15_ARATH RecName: Full=50S ribosomal protein L15, chloroplastic; AltName: Full=CL15; Flags: Precursor gi|13877945|gb|AAK44050.1|AF370235_1 putative 50S ribosomal protein L15, chloroplast precursor [Arabidopsis thaliana] gi|15983454|gb|AAL11595.1|AF424601_1 AT3g25920/MPE11_7 [Arabidopsis thaliana] gi|9279597|dbj|BAB01055.1| chloroplast 50S ribosomal protein L15 [Arabidopsis thaliana] gi|16323474|gb|AAL15231.1| putative 50S ribosomal protein L15, chloroplast precursor [Arabidopsis thaliana] gi|21536722|gb|AAM61054.1| 50S ribosomal protein L15, chloroplast precursor [Arabidopsis thaliana] gi|332643570|gb|AEE77091.1| 50S ribosomal protein L15 [Arabidopsis thaliana]

 Score =  238 bits (606), Expect = 1e-60,   Method: Compositional matrix adjust.
 Identities = 131/219 (59%), Positives = 158/219 (72%), Gaps = 19/219 (8%)

Query: 1   MASLLSVTANSLS--------FPSTPFKGNVKTLMPKPPSSLCVPLKVQQRNKPPQ---- 48
           MA+ LS+++N L+          ST FKGNV  L   P   L + L    + +  Q    
Sbjct: 1   MATPLSISSNPLTSRHCYRLHLSSTSFKGNVSVLGANPSQILSLKLNQTLKTRNQQQFAR 60

Query: 49  -LTVLNQAASASASAIVGSGPVTNVRFRLNNLGPQPGSRKRGKRKGRGIAAGQGNSCGFG 107
            L V++Q A A++SA+V        RFRL+NLGPQPGSRK+ KRKGRGI+AGQG SCGFG
Sbjct: 61  PLVVVSQTA-ATSSAVVAP-----ERFRLDNLGPQPGSRKKQKRKGRGISAGQGASCGFG 114

Query: 108 MRGQKSRSGPGVRKGFEGGQMPLYRRIPKLRGIAGGMHAGLPKYVPVNLKDIEAAGFLEG 167
           MRGQKSRSGPG+ +GFEGGQ  LYRR+PKLRGIAGGM +GLPKY+PVN+KDIE AGF EG
Sbjct: 115 MRGQKSRSGPGIMRGFEGGQTALYRRLPKLRGIAGGMRSGLPKYLPVNIKDIETAGFQEG 174

Query: 168 DEVSLETLKKKGLINPSGRERKLPLKVQDTIIVVLFVCF 206
           DEVSLETLK+KGLINPSGRERKLPLK+  T  + + + F
Sbjct: 175 DEVSLETLKQKGLINPSGRERKLPLKILGTGELSMKLTF 213

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388448|emb|CAA77592.1| plastid ribosomal protein CL15 [Arabidopsis thaliana]

 Score =  235 bits (599), Expect = 9e-60,   Method: Compositional matrix adjust.
 Identities = 128/208 (61%), Positives = 150/208 (72%), Gaps = 11/208 (5%)

Query: 4   LLSVTANSLSFPSTPFKGNVKTLMPKPPSSLCVPLKVQQRNKPPQ-----LTVLNQAASA 58
           L S     L   ST FKGNV  L   P   L + L    + +  Q     L V++Q A A
Sbjct: 8   LTSRHCYRLHLSSTSFKGNVSVLGANPSQILSLKLNQTLKTRNQQQFARPLVVVSQTA-A 66

Query: 59  SASAIVGSGPVTNVRFRLNNLGPQPGSRKRGKRKGRGIAAGQGNSCGFGMRGQKSRSGPG 118
           ++SA+V        RFRL+NLGPQPGSRK+ KRKGRGI+AGQG SCGFGMRGQKSRSGPG
Sbjct: 67  TSSAVVAP-----ERFRLDNLGPQPGSRKKQKRKGRGISAGQGASCGFGMRGQKSRSGPG 121

Query: 119 VRKGFEGGQMPLYRRIPKLRGIAGGMHAGLPKYVPVNLKDIEAAGFLEGDEVSLETLKKK 178
           + +GFEGGQ  LYRR+PKLRGIAGGM +GLPKY+PVN+KDIE AGF EGDEVSLETLK+K
Sbjct: 122 IMRGFEGGQTALYRRLPKLRGIAGGMRSGLPKYLPVNIKDIETAGFQEGDEVSLETLKQK 181

Query: 179 GLINPSGRERKLPLKVQDTIIVVLFVCF 206
           GLINPSGRERKLPLK+  T  + + + F
Sbjct: 182 GLINPSGRERKLPLKILGTGELSMKLTF 209

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	209
TAIR|locus:2092155	277	RPL15 "ribosomal protein L15"	0.933	0.703	0.577	2.7e-52
TIGR_CMR|DET_0493	153	DET_0493 "ribosomal protein L1	0.483	0.660	0.429	2.6e-15
UNIPROTKB|P02413	144	rplO "50S ribosomal subunit pr	0.478	0.694	0.448	3.3e-15
TIGR_CMR|CHY_2290	146	CHY_2290 "ribosomal protein L1	0.497	0.712	0.419	3.3e-15
TIGR_CMR|BA_0129	146	BA_0129 "ribosomal protein L15	0.488	0.698	0.398	2.1e-13
TIGR_CMR|CPS_0620	144	CPS_0620 "ribosomal protein L1	0.473	0.687	0.424	4.4e-13
TIGR_CMR|SO_0250	144	SO_0250 "ribosomal protein L15	0.531	0.770	0.372	5e-12
UNIPROTKB|Q9KP03	144	rplO "50S ribosomal protein L1	0.526	0.763	0.376	1.7e-11
TIGR_CMR|VC_2577	144	VC_2577 "ribosomal protein L15	0.526	0.763	0.376	1.7e-11
TIGR_CMR|GSU_2838	148	GSU_2838 "ribosomal protein L1	0.478	0.675	0.377	7.4e-11

TAIR|locus:2092155 RPL15 "ribosomal protein L15" [Arabidopsis thaliana (taxid:3702)]

 Score = 542 (195.9 bits), Expect = 2.7e-52, P = 2.7e-52
 Identities = 119/206 (57%), Positives = 136/206 (66%)

Query:     1 MASLLSVTANSLS--------FPSTPFKGNVKTLMPKPPSSLCVPLKVQQRNKPP-QLTV 51
             MA+ LS+++N L+          ST FKGNV  L   P  S  + LK+ Q  K   Q   
Sbjct:     1 MATPLSISSNPLTSRHCYRLHLSSTSFKGNVSVLGANP--SQILSLKLNQTLKTRNQQQF 58

Query:    52 LNQXXXXXXXXIVGSGPVTNVRFRLNNLGPQPGSXXXXXXXXXXIAAGQGNSCGFGMRGQ 111
                           S  V   RFRL+NLGPQPGS          I+AGQG SCGFGMRGQ
Sbjct:    59 ARPLVVVSQTAATSSAVVAPERFRLDNLGPQPGSRKKQKRKGRGISAGQGASCGFGMRGQ 118

Query:   112 KSRSGPGVRKGFEGGQMPLYRRIPKLRGIAGGMHAGLPKYVPVNLKDIEAAGFLEGDEVS 171
             KSRSGPG+ +GFEGGQ  LYRR+PKLRGIAGGM +GLPKY+PVN+KDIE AGF EGDEVS
Sbjct:   119 KSRSGPGIMRGFEGGQTALYRRLPKLRGIAGGMRSGLPKYLPVNIKDIETAGFQEGDEVS 178

Query:   172 LETLKKKGLINPSGRERKLPLKVQDT 197
             LETLK+KGLINPSGRERKLPLK+  T
Sbjct:   179 LETLKQKGLINPSGRERKLPLKILGT 204

GO:0003735 "structural constituent of ribosome" evidence=IEA;ISS

GO:0005622 "intracellular" evidence=IEA

GO:0005840 "ribosome" evidence=IEA

GO:0006412 "translation" evidence=IEA;TAS

GO:0009507 "chloroplast" evidence=ISM;IDA

GO:0015934 "large ribosomal subunit" evidence=IEA

GO:0000311 "plastid large ribosomal subunit" evidence=TAS

GO:0009570 "chloroplast stroma" evidence=IDA

GO:0009941 "chloroplast envelope" evidence=IDA

GO:0006354 "DNA-dependent transcription, elongation" evidence=RCA

TIGR_CMR|DET_0493 DET_0493 "ribosomal protein L15" [Dehalococcoides ethenogenes 195 (taxid:243164)]

 Score = 193 (73.0 bits), Expect = 2.6e-15, P = 2.6e-15
 Identities = 46/107 (42%), Positives = 59/107 (55%)

Query:    75 RLNNLGPQPGSXXXXXXXXXXIAAGQGNSCGFGMRGQKSRSGPGVRKGFEGGQMPLYRRI 134
             RLN L P PGS            AG+GN  G GM+GQK+RSG   R GFEGGQ+P+Y R+
Sbjct:     2 RLNELSPAPGSKKDRKRVGRG-DAGRGNYSGRGMKGQKARSGGATRPGFEGGQLPIYLRL 60

Query:   135 PKLRGIAGGMHAGLPKYVPVNLKDIEAAGFLEGDEVSLETLKKKGLI 181
             P+ RG          +Y  VN++ +    F  G EV+ ET+   GLI
Sbjct:    61 PRKRGFFNPFRI---EYTVVNIEQLNI--FEAGTEVTPETMLAAGLI 102

GO:0003735 "structural constituent of ribosome" evidence=ISS

GO:0006412 "translation" evidence=ISS

GO:0015934 "large ribosomal subunit" evidence=ISS

UNIPROTKB|P02413 rplO "50S ribosomal subunit protein L15" [Escherichia coli K-12 (taxid:83333)]

 Score = 192 (72.6 bits), Expect = 3.3e-15, P = 3.3e-15
 Identities = 48/107 (44%), Positives = 58/107 (54%)

Query:    75 RLNNLGPQPGSXXXXXXXXXXIAAGQGNSCGFGMRGQKSRSGPGVRKGFEGGQMPLYRRI 134
             RLN L P  GS          I +G G + G G +GQKSRSG GVR+GFEGGQMPLYRR+
Sbjct:     2 RLNTLSPAEGSKKAGKRLGRGIGSGLGKTGGRGHKGQKSRSGGGVRRGFEGGQMPLYRRL 61

Query:   135 PKLRGIAGGMHAGLPKYVPVNLKDIEAAGFLEGDEVSLETLKKKGLI 181
             PK  G      A +     + L D+     +EG  V L TLK   +I
Sbjct:    62 PKF-GFTS-RKAAIT--AEIRLSDLAK---VEGGVVDLNTLKAANII 101

GO:0015934 "large ribosomal subunit" evidence=IEA

GO:0006412 "translation" evidence=IEA

GO:0003735 "structural constituent of ribosome" evidence=IEA

GO:0030529 "ribonucleoprotein complex" evidence=IEA

GO:0019843 "rRNA binding" evidence=IEA

GO:0005840 "ribosome" evidence=IEA

GO:0003723 "RNA binding" evidence=IEA

TIGR_CMR|CHY_2290 CHY_2290 "ribosomal protein L15" [Carboxydothermus hydrogenoformans Z-2901 (taxid:246194)]

 Score = 192 (72.6 bits), Expect = 3.3e-15, P = 3.3e-15
 Identities = 47/112 (41%), Positives = 62/112 (55%)

Query:    75 RLNNLGPQPGSXXXXXXXXXXIAAGQGNSCGFGMRGQKSRSGPGVRKGFEGGQMPLYRRI 134
             RL++L P PGS          I +G G + G G +GQK+RSG GVR GFEGGQMPLYRR+
Sbjct:     2 RLHDLRPVPGSRQKPTRKGQGIGSGLGKTAGRGQKGQKARSGGGVRPGFEGGQMPLYRRL 61

Query:   135 PKLRGIAGGMHAGLPK-YVPVNLKDIEAAGFLEGDEVSLETLKKKGLINPSG 185
             PK      G H    K  + +N+  +    F +G  V+ E L + G+I   G
Sbjct:    62 PKR-----GFHNKFAKEIIAINVDRLNK--FEDGTVVTPELLLETGIIKKIG 106

GO:0003735 "structural constituent of ribosome" evidence=ISS

GO:0006412 "translation" evidence=ISS

TIGR_CMR|BA_0129 BA_0129 "ribosomal protein L15" [Bacillus anthracis str. Ames (taxid:198094)]

 Score = 175 (66.7 bits), Expect = 2.1e-13, P = 2.1e-13
 Identities = 43/108 (39%), Positives = 60/108 (55%)

Query:    75 RLNNLGPQPGSXXXXXXXXXXIAAGQGNSCGFGMRGQKSRSGPGVRKGFEGGQMPLYRRI 134
             +L+ L P  GS          I +G G + G G +GQ +RSG GVR GFEGGQ PL+RR+
Sbjct:     2 KLHELKPAEGSRKVRNRVGRGIGSGNGKTAGKGHKGQNARSGGGVRLGFEGGQTPLFRRL 61

Query:   135 PKLRGIAGGMHAGLPKYVPVNLKDIEAAGFLEGDEVSLETLKKKGLIN 182
             PK RG     +    ++  VNL  +    F +G EV+ E L + G+I+
Sbjct:    62 PK-RGFT---NINRKEFAIVNLSTLNR--FEDGTEVTPELLLETGVIS 103

GO:0003735 "structural constituent of ribosome" evidence=ISS

GO:0006412 "translation" evidence=ISS

TIGR_CMR|CPS_0620 CPS_0620 "ribosomal protein L15" [Colwellia psychrerythraea 34H (taxid:167879)]

 Score = 172 (65.6 bits), Expect = 4.4e-13, P = 4.4e-13
 Identities = 45/106 (42%), Positives = 55/106 (51%)

Query:    76 LNNLGPQPGSXXXXXXXXXXIAAGQGNSCGFGMRGQKSRSGPGVRKGFEGGQMPLYRRIP 135
             LN L P PGS          I +G G + G G +GQKSRSG  VR GFEGGQMPL +R+P
Sbjct:     3 LNTLSPAPGSHKARKRCGRGIGSGIGKTGGRGHKGQKSRSGGSVRPGFEGGQMPLKQRLP 62

Query:   136 KLRGIAGGMHAGLPKYVPVNLKDIEAAGFLEGDEVSLETLKKKGLI 181
             K  G        L +   V L ++     + GD V +  LK  GLI
Sbjct:    63 KF-GFTS--RKSLVR-AEVRLHELN---LITGDVVDIHALKDAGLI 101

GO:0003735 "structural constituent of ribosome" evidence=ISS

GO:0006412 "translation" evidence=ISS

GO:0015934 "large ribosomal subunit" evidence=ISS

TIGR_CMR|SO_0250 SO_0250 "ribosomal protein L15" [Shewanella oneidensis MR-1 (taxid:211586)]

 Score = 162 (62.1 bits), Expect = 5.0e-12, P = 5.0e-12
 Identities = 44/118 (37%), Positives = 59/118 (50%)

Query:    75 RLNNLGPQPGSXXXXXXXXXXIAAGQGNSCGFGMRGQKSRSGPGVRKGFEGGQMPLYRRI 134
             RLN L P  G+          + +G G + G G +GQKSRSG GVR GFEGGQMPL  R+
Sbjct:     2 RLNTLSPAAGAKHAPKRVGRGMGSGLGKTAGRGHKGQKSRSGGGVRPGFEGGQMPLKIRL 61

Query:   135 PKLRGIAGGMHAGLPKYVPVNLKDIEAAGFLEGDEVSLETLKKKGLINPSGRERKLPL 192
             PK  G            V   ++ +E A  + GD + L  LK   +I  + +  K+ L
Sbjct:    62 PKF-GFTSRR-----AMVTAEVRVLELAK-VNGDVIDLNALKDANVITRNIQFAKIVL 112

GO:0003735 "structural constituent of ribosome" evidence=ISS

GO:0006412 "translation" evidence=ISS

UNIPROTKB|Q9KP03 rplO "50S ribosomal protein L15" [Vibrio cholerae O1 biovar El Tor str. N16961 (taxid:243277)]

 Score = 157 (60.3 bits), Expect = 1.7e-11, P = 1.7e-11
 Identities = 44/117 (37%), Positives = 57/117 (48%)

Query:    76 LNNLGPQPGSXXXXXXXXXXIAAGQGNSCGFGMRGQKSRSGPGVRKGFEGGQMPLYRRIP 135
             LN L P  GS          + +G G + G G +GQKSRSG  VR GFEGGQMPL +R+P
Sbjct:     3 LNTLSPAAGSKHAPKRLGRGVGSGLGKTGGRGHKGQKSRSGGKVRPGFEGGQMPLKQRLP 62

Query:   136 KLRGIAGGMHAGLPKYVPVNLKDIEAAGFLEGDEVSLETLKKKGLINPSGRERKLPL 192
             K  G           +V   ++  E A  + GD V L  LK   L+  +    K+ L
Sbjct:    63 KF-GFTSRK-----SFVSAEVRLSELAK-VTGDVVDLNALKAANLVTKNIEFAKIVL 112

GO:0003735 "structural constituent of ribosome" evidence=ISS

GO:0006412 "translation" evidence=ISS

TIGR_CMR|VC_2577 VC_2577 "ribosomal protein L15" [Vibrio cholerae O1 biovar El Tor (taxid:686)]

 Score = 157 (60.3 bits), Expect = 1.7e-11, P = 1.7e-11
 Identities = 44/117 (37%), Positives = 57/117 (48%)

Query:    76 LNNLGPQPGSXXXXXXXXXXIAAGQGNSCGFGMRGQKSRSGPGVRKGFEGGQMPLYRRIP 135
             LN L P  GS          + +G G + G G +GQKSRSG  VR GFEGGQMPL +R+P
Sbjct:     3 LNTLSPAAGSKHAPKRLGRGVGSGLGKTGGRGHKGQKSRSGGKVRPGFEGGQMPLKQRLP 62

Query:   136 KLRGIAGGMHAGLPKYVPVNLKDIEAAGFLEGDEVSLETLKKKGLINPSGRERKLPL 192
             K  G           +V   ++  E A  + GD V L  LK   L+  +    K+ L
Sbjct:    63 KF-GFTSRK-----SFVSAEVRLSELAK-VTGDVVDLNALKAANLVTKNIEFAKIVL 112

GO:0003735 "structural constituent of ribosome" evidence=ISS

GO:0006412 "translation" evidence=ISS

TIGR_CMR|GSU_2838 GSU_2838 "ribosomal protein L15" [Geobacter sulfurreducens PCA (taxid:243231)]

 Score = 151 (58.2 bits), Expect = 7.4e-11, P = 7.4e-11
 Identities = 40/106 (37%), Positives = 53/106 (50%)

Query:    76 LNNLGPQPGSXXXXXXXXXXIAAGQGNSCGFGMRGQKSRSGPGVRKGFEGGQMPLYRRIP 135
             LN L P  G+            +G G +   G +GQK+RSG  V+ GFEGGQMP+ RR+P
Sbjct:     3 LNELRPAVGATKDRKRIGRGPGSGHGKTATKGHKGQKARSGGSVKPGFEGGQMPMQRRLP 62

Query:   136 KLRGIAGGMHAGLPKYVPVNLKDIEAAGFLEGDEVSLETLKKKGLI 181
             K RG          +Y  VN+  +E   F  G  + +E L   GLI
Sbjct:    63 K-RGFTPLTRK---EYALVNVGQLEV--FEAGSCIDVEALLNAGLI 102

GO:0003735 "structural constituent of ribosome" evidence=ISS

GO:0006412 "translation" evidence=ISS

GO:0042254 "ribosome biogenesis" evidence=ISS

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
P25873	RK15_ARATH	No assigned EC number	0.5981	0.9569	0.7220	yes	no
P31165	RK15_PEA	No assigned EC number	0.7046	0.8755	0.7093	N/A	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	GSVIVG00030345001	SubName- Full=Chromosome chr1 scaffold_5, whole genome shotgun sequence; (262 aa)
		(Vitis vinifera)
Predicted Functional Partners:
	GSVIVG00019749001	SubName- Full=Putative uncharacterized protein (Chromosome chr5 scaffold_2, whole genome shotgu [...] (161 aa)	•			•	•		•		0.990
	GSVIVG00026943001	SubName- Full=Chromosome chr15 scaffold_40, whole genome shotgun sequence; (265 aa)	•			•	•		•		0.990
	GSVIVG00035271001	SubName- Full=Chromosome chr10 scaffold_76, whole genome shotgun sequence; (140 aa)	•			•	•		•		0.988
	GSVIVG00026031001	SubName- Full=Chromosome chr12 scaffold_36, whole genome shotgun sequence; (117 aa)	•			•	•		•		0.986
	GSVIVG00023012001	SubName- Full=Chromosome chr6 scaffold_28, whole genome shotgun sequence; (213 aa)	•			•	•		•		0.984
	GSVIVG00035173001	SubName- Full=Chromosome chr10 scaffold_76, whole genome shotgun sequence; (116 aa)	•			•	•		•		0.980
	GSVIVG00003076001	SubName- Full=Chromosome chr10 scaffold_138, whole genome shotgun sequence; (340 aa)	•			•			•		0.978
	GSVIVG00033342001	SubName- Full=Chromosome chr19 scaffold_66, whole genome shotgun sequence; (203 aa)	•			•			•		0.978
	GSVIVG00015322001	SubName- Full=Chromosome chr18 scaffold_1, whole genome shotgun sequence; (167 aa)	•			•			•		0.974
	rps8	RecName- Full=30S ribosomal protein S8, chloroplastic;; One of the primary rRNA binding protein [...] (134 aa)	•			•			•		0.972

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	209
PRK05592	146	PRK05592, rplO, 50S ribosomal protein L15; Reviewe	2e-42
TIGR01071	145	TIGR01071, rplO_bact, ribosomal protein L15, bacte	1e-33
COG0200	152	COG0200, RplO, Ribosomal protein L15 [Translation,	6e-26
pfam00828	122	pfam00828, Ribosomal_L18e, Ribosomal protein L18e/	4e-12

>gnl|CDD|235523 PRK05592, rplO, 50S ribosomal protein L15; Reviewed

 Score =  139 bits (353), Expect = 2e-42
 Identities = 64/120 (53%), Positives = 75/120 (62%), Gaps = 10/120 (8%)

Query: 75  RLNNLGPQPGSRKRGKRKGRGIAAGQGNSCGFGMRGQKSRSGPGVRKGFEGGQMPLYRRI 134
           +LN L P PGSRK  KR GRGI +G G + G G +GQK+RSG GVR GFEGGQMPLYRR+
Sbjct: 2   KLNELKPAPGSRKARKRVGRGIGSGLGKTAGRGHKGQKARSGGGVRPGFEGGQMPLYRRL 61

Query: 135 PKLRGIAGGMHAGLPKYVPVNLKDIEAAGFLEGDEVSLETLKKKGLINPSGRERKLPLKV 194
           PK RG          +Y  VNL D+    F EG EV+LE LK  GLI    R+    +KV
Sbjct: 62  PK-RGFTNIFRK---EYAVVNLGDLNK--FEEGTEVTLEALKAAGLI----RKNIKGVKV 111

Length = 146

>gnl|CDD|233260 TIGR01071, rplO_bact, ribosomal protein L15, bacterial/organelle

 Score =  117 bits (295), Expect = 1e-33
 Identities = 57/109 (52%), Positives = 71/109 (65%), Gaps = 6/109 (5%)

Query: 75  RLNNLGPQPGSRKRGKRKGRGIAAGQGNSCGFGMRGQKSRSGPGVRKGFEGGQMPLYRRI 134
           +LN L P  G++KR KR GRGI +G G + G G +GQK+RSG  VR+GFEGGQMPLYRR+
Sbjct: 1   KLNELKPAKGAKKRRKRVGRGIGSGLGKTSGRGHKGQKARSGGKVRRGFEGGQMPLYRRL 60

Query: 135 PKLRGIAGGMHAGLPK-YVPVNLKDIEAAGFLEGDEVSLETLKKKGLIN 182
           PK     G  +    K Y  VNL  +    F  G+ V+LETLK+KGLI 
Sbjct: 61  PKR----GFSNKRFKKEYAEVNLGKLAKL-FPNGEVVTLETLKEKGLIT 104

[Protein synthesis, Ribosomal proteins: synthesis and modification]. Length = 145

>gnl|CDD|223278 COG0200, RplO, Ribosomal protein L15 [Translation, ribosomal structure and biogenesis]

 Score = 97.3 bits (243), Expect = 6e-26
 Identities = 56/109 (51%), Positives = 69/109 (63%), Gaps = 4/109 (3%)

Query: 75  RLNNLGPQPGSRKRGKRKGRGIAAGQGNSCGFGMRGQKSRSGPG-VRKGFEGGQMPLYRR 133
           RLN+L P  GS+K  KR GRGI +G G + G G +GQK+RSG   VR GFEGGQMPLYRR
Sbjct: 2   RLNDLKPARGSKKTRKRVGRGIGSGLGKTGGRGHKGQKARSGHKWVRPGFEGGQMPLYRR 61

Query: 134 IPKLRGIAGGMHAGLPKYVPVNLKDIEAAGFLEGDEVSLETLKKKGLIN 182
           +PK RG          +Y  VNL  + A    EG+EV+L +LK  G+I 
Sbjct: 62  LPK-RGFTNSKFK-KVEYAVVNLGKL-AELLPEGEEVTLASLKAAGVIR 107

Length = 152

>gnl|CDD|216140 pfam00828, Ribosomal_L18e, Ribosomal protein L18e/L15

 Score = 60.3 bits (147), Expect = 4e-12
 Identities = 30/82 (36%), Positives = 42/82 (51%), Gaps = 3/82 (3%)

Query: 100 QGNSCGFGMRGQKSRSGPGVRKGFEGGQMPLYRRIPKLRGIAGGMHAGLPKYVPVNLKDI 159
            G + G G +G + R+G      FEGGQ+PLYRR+ K RG    +        PVNL  +
Sbjct: 3   IGKTRGRGRKGGRGRAGGQKHH-FEGGQVPLYRRLGK-RGFR-KLFKSRKNRPPVNLSKL 59

Query: 160 EAAGFLEGDEVSLETLKKKGLI 181
           +     +G+EV  ETL   G +
Sbjct: 60  DRKMLKDGEEVDGETLVVVGTV 81

This family includes eukaryotic L18 as well as prokaryotic L15. Length = 122

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	209
PRK05592	146	rplO 50S ribosomal protein L15; Reviewed	100.0
TIGR01071	145	rplO_bact ribosomal protein L15, bacterial/organel	100.0
COG0200	152	RplO Ribosomal protein L15 [Translation, ribosomal	100.0
KOG0846	274	consensus Mitochondrial/chloroplast ribosomal prot	100.0
PF00828	129	Ribosomal_L18e: Ribosomal protein L18e/L15; InterP	99.89
PRK06419	148	rpl15p 50S ribosomal protein L15P; Reviewed	98.93
PTZ00160	147	60S ribosomal protein L27a; Provisional	98.17
PRK04005	111	50S ribosomal protein L18e; Provisional	98.01

>PRK05592 rplO 50S ribosomal protein L15; Reviewed

Probab=100.00  E-value=8.5e-50  Score=326.29  Aligned_cols=125  Identities=50%  Similarity=0.778  Sum_probs=116.5

Q ss_pred             eecCCCCCCCCCCccccccccCCCCCCCCccccCCCCCCCCCCCCCCCcccCCCCCeEEecccccCCCCCCCCCCCeeEe
Q 028403           74 FRLNNLGPQPGSRKRGKRKGRGIAAGQGNSCGFGMRGQKSRSGPGVRKGFEGGQMPLYRRIPKLRGIAGGMHAGLPKYVP  153 (209)
Q Consensus        74 m~L~nL~p~pGark~rKRvGRG~gSG~GKTsGRGhKGQkaRsG~~~r~GFEGGQtPLyRRlPK~RGF~ng~~~~~~~y~~  153 (209)
                      |+||||+|++||++++||+|||+|||+|||||||||||+||+|+.+++||||||||||||||| |||+|.   ++++|.+
T Consensus         1 m~L~~l~~~~ga~~~~kRvGRG~gsG~GkT~GrG~KGqksR~g~~~~~gFEGGQ~Pl~rrlPk-~Gf~~~---~~~~y~~   76 (146)
T PRK05592          1 MKLNELKPAPGSRKARKRVGRGIGSGLGKTAGRGHKGQKARSGGGVRPGFEGGQMPLYRRLPK-RGFTNI---FRKEYAV   76 (146)
T ss_pred             CccccCcCCCCCcCCCccEecCCCCCCCCcCCCCCCcccCCCCCCCCCccccCCCceEEEccc-CCcCCC---CcceEEE
Confidence            799999999999999999999999999999999999999999988999999999999999999 699873   5789999


Q ss_pred             EechhhhhccCCCCCccCHHHHHHCCCCCCCCCCCCCCeEEEcCCeeeeeEEEec
Q 028403          154 VNLKDIEAAGFLEGDEVSLETLKKKGLINPSGRERKLPLKVQDTIIVVLFVCFHI  208 (209)
Q Consensus       154 VNL~~L~~~r~~~~~~It~e~L~~~glI~~~~~~~~~~VKILg~Gelt~~l~Ihi  208 (209)
                      |||++|+.  ++++++||+++|+++++|+.+    .++|||||+|+++.++.|+.
T Consensus        77 VNL~~L~~--~~~~~~I~~~~L~~~gli~~~----~~~vKvLg~G~l~~~i~I~a  125 (146)
T PRK05592         77 VNLGDLNK--FEEGTEVTLEALKAAGLIRKN----IKGVKVLGNGELTKKLTVKA  125 (146)
T ss_pred             EeHHHhhc--cCCCCeECHHHHHHCCcccCC----CcceEEEecCccccCEEEEE
Confidence            99999984  888999999999999999863    46899999999999988864

>TIGR01071 rplO_bact ribosomal protein L15, bacterial/organelle

Probab=100.00  E-value=8.3e-48  Score=312.99  Aligned_cols=126  Identities=47%  Similarity=0.722  Sum_probs=114.7

Q ss_pred             ecCCCCCCCCCCccccccccCCCCCCCCccccCCCCCCCCCCCCCCCcccCCCCCeEEecccccCCCCCCCCCCCeeEeE
Q 028403           75 RLNNLGPQPGSRKRGKRKGRGIAAGQGNSCGFGMRGQKSRSGPGVRKGFEGGQMPLYRRIPKLRGIAGGMHAGLPKYVPV  154 (209)
Q Consensus        75 ~L~nL~p~pGark~rKRvGRG~gSG~GKTsGRGhKGQkaRsG~~~r~GFEGGQtPLyRRlPK~RGF~ng~~~~~~~y~~V  154 (209)
                      +||||+|+|||++++||+|||+|||+|||||||||||+||+|+.+++||||||||||||||| +||+|.+  ++++|.+|
T Consensus         1 ~l~~l~~~~g~~~~~kR~GRG~gsg~Gkt~GrG~kGqk~R~g~~~~~gfEGGQ~Pl~rrlPK-~GF~~~~--~~~~~~~V   77 (145)
T TIGR01071         1 KLNELKPAKGAKKRRKRVGRGIGSGLGKTSGRGHKGQKARSGGKVRRGFEGGQMPLYRRLPK-RGFSNKR--FKKEYAEV   77 (145)
T ss_pred             CcccCcCCCCCcCCCcceeCCCCCCCCCcCCCCCCcCcCCCCCCCCCeecCCCCceEEECCC-CCCCCcc--cCcceeEE
Confidence            48999999999999999999999999999999999999999989999999999999999999 6998742  57899999


Q ss_pred             echhhhhccCCCCCccCHHHHHHCCCCCCCCCCCCCCeEEEcCCeeeeeEEEec
Q 028403          155 NLKDIEAAGFLEGDEVSLETLKKKGLINPSGRERKLPLKVQDTIIVVLFVCFHI  208 (209)
Q Consensus       155 NL~~L~~~r~~~~~~It~e~L~~~glI~~~~~~~~~~VKILg~Gelt~~l~Ihi  208 (209)
                      ||++|+. .++++++||+++|+++++|+..    ...|||||+|+++.++.|+.
T Consensus        78 NL~~L~~-~~~~g~~i~~~~L~~~gli~~~----~~~vKvLg~G~l~~~l~I~a  126 (145)
T TIGR01071        78 NLGKLAK-LFPNGEVVTLETLKEKGLITKK----IKFVKVLGNGKLTKPLTVKA  126 (145)
T ss_pred             EHHHHhh-hhhcCCEecHHHHhhCccCcCC----CCceEEeCCCCcCcCEEEEE
Confidence            9999984 3577889999999999999752    45799999999999988864

>COG0200 RplO Ribosomal protein L15 [Translation, ribosomal structure and biogenesis]

Probab=100.00  E-value=4.9e-40  Score=271.55  Aligned_cols=126  Identities=47%  Similarity=0.700  Sum_probs=113.3

Q ss_pred             eecCCCCCCCCCCccccccccCCCCCCCCccccCCCCCCCCCCCC-CCCcccCCCCCeEEecccccCCCCCCCCCCC-ee
Q 028403           74 FRLNNLGPQPGSRKRGKRKGRGIAAGQGNSCGFGMRGQKSRSGPG-VRKGFEGGQMPLYRRIPKLRGIAGGMHAGLP-KY  151 (209)
Q Consensus        74 m~L~nL~p~pGark~rKRvGRG~gSG~GKTsGRGhKGQkaRsG~~-~r~GFEGGQtPLyRRlPK~RGF~ng~~~~~~-~y  151 (209)
                      |+|++|+|..|+++.++|+|||++||+|||+|||||||+||+|+. +++||||||||||||||| |||+|  ..+.+ +|
T Consensus         1 m~l~~l~~~~G~~~~~~rvgrG~~sG~Gkt~GRG~kGqkaRsg~~~~~~gfeGgq~Pl~rrlpK-~GF~~--~~~~~~~~   77 (152)
T COG0200           1 MRLNDLKPARGSKKTRKRVGRGIGSGLGKTGGRGHKGQKARSGHKWVRPGFEGGQMPLYRRLPK-RGFTN--SKFKKVEY   77 (152)
T ss_pred             CcccccCcCCCCccccCCcccCCCCCCCCCCCCCCCCCccccCCceecceeecCCcchhhhcCC-CCCcc--ccccccce
Confidence            789999999999999999999999999999999999999999855 999999999999999999 69997  23444 89


Q ss_pred             EeEechhhhhccCCCCCccCHHHHHHCCCCCCCCCCCCCCeEEEcCCeeeeeEEEe
Q 028403          152 VPVNLKDIEAAGFLEGDEVSLETLKKKGLINPSGRERKLPLKVQDTIIVVLFVCFH  207 (209)
Q Consensus       152 ~~VNL~~L~~~r~~~~~~It~e~L~~~glI~~~~~~~~~~VKILg~Gelt~~l~Ih  207 (209)
                      .+|||++|+ ..++++++||+++|.+.++|...    .+.|||||+|+|+.+++|+
T Consensus        78 ~~vn~~~l~-~~~~~~~~v~~~~l~~~~~i~~~----~~~vKvLg~G~l~~~~~~~  128 (152)
T COG0200          78 AVVNLGKLA-ELLPEGEEVTLASLKAAGVIRKL----KDLVKVLGNGKLTKAVPVK  128 (152)
T ss_pred             eEEEHHHhh-hhccccccccHHHHhhCCeEecc----ccccEEeccCeeccceeEE
Confidence            999999998 46788999999999999999874    5679999999999555554

>KOG0846 consensus Mitochondrial/chloroplast ribosomal protein L15/L10 [Translation, ribosomal structure and biogenesis]

Probab=100.00  E-value=2.4e-37  Score=272.95  Aligned_cols=132  Identities=42%  Similarity=0.728  Sum_probs=116.8

Q ss_pred             CCCCeeecCCCCCCCCCCccccccccCCCCCCCCccccCCCCCCCCCCCCCCCcccCCCCCeEEecccccCCCCCCCCCC
Q 028403           69 VTNVRFRLNNLGPQPGSRKRGKRKGRGIAAGQGNSCGFGMRGQKSRSGPGVRKGFEGGQMPLYRRIPKLRGIAGGMHAGL  148 (209)
Q Consensus        69 ~~~~rm~L~nL~p~pGark~rKRvGRG~gSG~GKTsGRGhKGQkaRsG~~~r~GFEGGQtPLyRRlPK~RGF~ng~~~~~  148 (209)
                      +..+|+.|+||+|++|+++ +||+|||++||+|||||||||||++|++ ..+.||||||||||||+||+ ||.++   ++
T Consensus        17 r~~sr~~L~dLrpn~gskk-~kR~GRg~~sG~Gkt~GrG~KGqkqR~~-~~~lGfEgGqtP~yrr~Pk~-~~~~~---~~   90 (274)
T KOG0846|consen   17 RALSRVRLNDLRPNPGSKK-KKRKGRGISSGLGKTSGRGHKGQKQRGG-RKILGFEGGQTPLYRRFPKF-GFGNG---GR   90 (274)
T ss_pred             hhhhhhhhhccCCCCCccc-ccccCCCcCCCCccccCCCCcchhhccC-CCccccccCCchhHHhcccc-ccccc---cc
Confidence            7788999999999999999 7799999999999999999999999987 44569999999999999996 99764   57


Q ss_pred             CeeEeEechhhh----hccCCCCCccCHHHHHHCCCCCCCCCCCCCCeEEEcCCeeeeeEEEec
Q 028403          149 PKYVPVNLKDIE----AAGFLEGDEVSLETLKKKGLINPSGRERKLPLKVQDTIIVVLFVCFHI  208 (209)
Q Consensus       149 ~~y~~VNL~~L~----~~r~~~~~~It~e~L~~~glI~~~~~~~~~~VKILg~Gelt~~l~Ihi  208 (209)
                      ++|.+++|.+|+    .++||+.++|||++|++.|+|.+.  .++++|+|+++|...++.+|+|
T Consensus        91 r~~~pl~L~rlq~lID~grid~~q~Idm~tL~~~g~i~p~--~~eyGv~L~~~G~d~~~~~i~i  152 (274)
T KOG0846|consen   91 RQYLPLSLGRLQKLIDTGRIDPSQPIDMKTLKDSGLINPK--GREYGVQLTADGADEFKAKINI  152 (274)
T ss_pred             ccCCcccHHHHHHHHHhcCCCccCceeHHHHHhccCCCcc--ccccCceeeccCCccccceEEE
Confidence            899999999985    589999999999999999987664  3678999999887777766665

>PF00828 Ribosomal_L18e: Ribosomal protein L18e/L15; InterPro: IPR021131 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms

Probab=99.89  E-value=3.5e-25  Score=175.09  Aligned_cols=101  Identities=37%  Similarity=0.574  Sum_probs=83.0

Q ss_pred             CCCccccCCCCCCCCCCC-CCCCcccCCCCCeEEecccccCCCCCCC-CCCCeeEeEechhhhhc--cCC-CCCccCHHH
Q 028403          100 QGNSCGFGMRGQKSRSGP-GVRKGFEGGQMPLYRRIPKLRGIAGGMH-AGLPKYVPVNLKDIEAA--GFL-EGDEVSLET  174 (209)
Q Consensus       100 ~GKTsGRGhKGQkaRsG~-~~r~GFEGGQtPLyRRlPK~RGF~ng~~-~~~~~y~~VNL~~L~~~--r~~-~~~~It~e~  174 (209)
                      +|||||||||||++|+|+ ..+++|||||||+|||||| +||++.+. .++.+|.+|||++|+..  .+. ++.++|.+.
T Consensus         3 ~gkt~grG~kG~~~rsG~~~~~~~feggq~pl~rr~pK-~Gf~~~~~~~~~~~~~~vnL~~L~~~i~~~~~~~~~~~~~~   81 (129)
T PF00828_consen    3 KGKTRGRGHKGGRGRSGGHKHRPGFEGGQMPLYRRLPK-RGFNNPHLRKNRREYPPVNLSKLQELIEKLKIDGTEIDGKI   81 (129)
T ss_dssp             SSSSSSSSSSSSSSSTTTSSTSSHHHHHHSHHHHHSSS-SSHHHCCHCSGTCCCEEEEHHHHHHHTTTSSSSSCECTTSE
T ss_pred             CCccCcccCCCCCCCCCCCCCCchhcccccccccccCc-ccccccccccCcceeEeeeHHHHHHHHHhccccccccCCce
Confidence            699999999999999997 7889999999999999999 69987432 13468999999999841  111 112789999


Q ss_pred             HHHCCCCCCCCCCCCCCeEEEcCCeeeeeEEEec
Q 028403          175 LKKKGLINPSGRERKLPLKVQDTIIVVLFVCFHI  208 (209)
Q Consensus       175 L~~~glI~~~~~~~~~~VKILg~Gelt~~l~Ihi  208 (209)
                      |++.+++ .      +.+||||+|+++.++.|+.
T Consensus        82 ~~~~~~~-~------~~~KvLg~G~l~~~l~I~a  108 (129)
T PF00828_consen   82 LVDAGLI-K------GYVKVLGKGELTKPLTIKA  108 (129)
T ss_dssp             EEECCEE-S------SEEEEESSSSSSSSEEEEE
T ss_pred             eeecccc-c------cceeeeccCCcccceEEEE
Confidence            9999988 2      5799999999999988864

The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents both L15 and L18e ribosomal proteins, which share a common structure consisting mainly of parallel beta sheets (beta-alpha-beta units) with a core of three turns of irregular (beta-beta-alpha)n superhelix [, ].; PDB: 3O58_Y 1S1I_V 3O5H_Y 3IZS_O 3IZR_R 2OTL_L 1M1K_M 3G6E_L 1VQ9_L 1YIT_L ....

>PRK06419 rpl15p 50S ribosomal protein L15P; Reviewed

Probab=98.93  E-value=7.1e-09  Score=85.49  Aligned_cols=105  Identities=17%  Similarity=0.176  Sum_probs=63.5

Q ss_pred             cccccccCCCCCCCCccccCCCCCCCCCCCCCCCcccCCCCCeE--------EecccccCCCCCCCCCCCeeEeEechhh
Q 028403           88 RGKRKGRGIAAGQGNSCGFGMRGQKSRSGPGVRKGFEGGQMPLY--------RRIPKLRGIAGGMHAGLPKYVPVNLKDI  159 (209)
Q Consensus        88 ~rKRvGRG~gSG~GKTsGRGhKGQkaRsG~~~r~GFEGGQtPLy--------RRlPK~RGF~ng~~~~~~~y~~VNL~~L  159 (209)
                      ++.|.=||.     .|||+|..|+..-+|..--.|--||+-.-+        --+|| +||++.+ ..+.+|.+|||++|
T Consensus         6 ~k~rk~RG~-----~t~G~G~~~~~R~~G~~GGrG~aG~~~h~~~~~~k~~p~~fpK-~GF~~~~-~~~~~~~~INL~~L   78 (148)
T PRK06419          6 KKSRKLRGS-----RTHGGGTHKNHRGAGSRGGRGMAGRHKHKWTWVVKYGPDWYGK-HGFKRPP-KLIKEVSTINVGEL   78 (148)
T ss_pred             ccccCCCcC-----CCcCCCCcCcCCCCCCCCCCcccCCCcccceEeeeeCCCCCCC-CCccCCC-cCcceeeeEEHHHH
Confidence            344555662     456666655543333222234555542211        13789 6999742 22478999999999


Q ss_pred             hhccCCCCCccCHHHHHHCCCCCCCC-----C-CCCCCeEEEcCCeeeeeEEEec
Q 028403          160 EAAGFLEGDEVSLETLKKKGLINPSG-----R-ERKLPLKVQDTIIVVLFVCFHI  208 (209)
Q Consensus       160 ~~~r~~~~~~It~e~L~~~glI~~~~-----~-~~~~~VKILg~Gelt~~l~Ihi  208 (209)
                      +.  +       ++.|.+.+++....     + .....+||||+|+++.++.|+.
T Consensus        79 ~~--l-------~~~l~~~g~i~~~~~~~vid~~~~g~~KVLG~G~l~~pl~Vka  124 (148)
T PRK06419         79 DE--L-------ADLLKAEGKAEEEDGKIVVDLTELGYDKVLGGGKVTRPLVIKA  124 (148)
T ss_pred             HH--h-------HHHHHHCCcccccCCcceeeeccCCceEEeCCCccCcCEEEEE
Confidence            74  2       25677777775421     0 0124799999999999888864

>PTZ00160 60S ribosomal protein L27a; Provisional

Probab=98.17  E-value=2.4e-06  Score=70.95  Aligned_cols=110  Identities=23%  Similarity=0.189  Sum_probs=62.0

Q ss_pred             CccccccccCCCCCCCCccccCCCCCCCCCCCCCCCcccCCCCCeEEecccc-------cCCCCCCCCCCCee--EeEec
Q 028403           86 RKRGKRKGRGIAAGQGNSCGFGMRGQKSRSGPGVRKGFEGGQMPLYRRIPKL-------RGIAGGMHAGLPKY--VPVNL  156 (209)
Q Consensus        86 rk~rKRvGRG~gSG~GKTsGRGhKGQkaRsG~~~r~GFEGGQtPLyRRlPK~-------RGF~ng~~~~~~~y--~~VNL  156 (209)
                      ++++.|.=||.     .|||.|..||.. .- .--.|..|||-.-+..+-|+       .||+.. +..+.++  .+|||
T Consensus         4 r~kK~rK~RG~-----rt~G~G~~gkhR-~~-~GGrG~AG~~kH~~~~~~ky~p~~fGK~Gfr~~-~~~~~~~~~~~INl   75 (147)
T PTZ00160          4 RFKKCRKMRGH-----VSHGYGRVGKHR-KH-PGGRGNAGGQHHHRINFDKYHPGYFGKVGMRHF-HLKKNKYYCPTINV   75 (147)
T ss_pred             ccccccCCCCC-----CccCCCCCCCCC-CC-CCCCcccCCCcceEEEeeecCCCccCCCCccCC-ccccccccCceeEH
Confidence            34445566873     789999888763 21 11258999997766665554       466542 3334455  89999


Q ss_pred             hhhhhccCCCCCccCHHH-HHHCCCCCCCCCCCCCCeEEEcCCee-eeeEEEe
Q 028403          157 KDIEAAGFLEGDEVSLET-LKKKGLINPSGRERKLPLKVQDTIIV-VLFVCFH  207 (209)
Q Consensus       157 ~~L~~~r~~~~~~It~e~-L~~~glI~~~~~~~~~~VKILg~Gel-t~~l~Ih  207 (209)
                      ++|+.. +++........ --++-+|...   ....+||||+|++ +.++.|.
T Consensus        76 ~~L~~l-v~~~~~~~~a~~~~~~~vIDl~---~~g~~KVLG~G~l~~~~v~Vk  124 (147)
T PTZ00160         76 DKLWSL-VPEETRYKYAKKGDKAPVIDVT---KAGYFKVLGKGHLPKQPVIVK  124 (147)
T ss_pred             HHHHHH-hHHHHHHhhhhccCCceEEEee---ccCceEEecCCeEcCccEEEE
Confidence            999741 11100000000 0011122221   1235999999999 6677775

>PRK04005 50S ribosomal protein L18e; Provisional

Probab=98.01  E-value=1.8e-06  Score=68.76  Aligned_cols=55  Identities=25%  Similarity=0.371  Sum_probs=42.7

Q ss_pred             CCeEEecccccCCCCCCCCCCCeeEeEechhhhhccCC-CCCccCHHHHHHCCCCCCCCCCCCCCeEEEcCCeeeeeEEE
Q 028403          128 MPLYRRIPKLRGIAGGMHAGLPKYVPVNLKDIEAAGFL-EGDEVSLETLKKKGLINPSGRERKLPLKVQDTIIVVLFVCF  206 (209)
Q Consensus       128 tPLyRRlPK~RGF~ng~~~~~~~y~~VNL~~L~~~r~~-~~~~It~e~L~~~glI~~~~~~~~~~VKILg~Gelt~~l~I  206 (209)
                      -|||+|+|| | +.    ..+.+|.+|||++|+.  +. ++++|+                  .++||||+|+++.++.|
T Consensus        18 ~~~~~~v~~-r-l~----~~r~~y~vVNL~~L~~--~~~~~~vv~------------------~~~KVLg~G~l~k~l~V   71 (111)
T PRK04005         18 APIWKDVAE-R-LE----KPRRRRAEVNLSKINR--YAKEGDTVV------------------VPGKVLGSGKLDHKVTV   71 (111)
T ss_pred             CcHHHHHHH-H-Hh----CCCCccceEEHHHHHh--hccCCCEEE------------------EeeEEEcCceEcCCEEE
Confidence            489999999 5 43    2467999999999983  53 555553                  26899999999999887


Q ss_pred             ec
Q 028403          207 HI  208 (209)
Q Consensus       207 hi  208 (209)
                      +.
T Consensus        72 ~a   73 (111)
T PRK04005         72 AA   73 (111)
T ss_pred             EE
Confidence            63

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	209
3bbo_N	257	Homology Model For The Spinach Chloroplast 50s Subu		2e-56
1p85_J	144	Real Space Refined Coordinates Of The 50s Subunit F		5e-14
3fik_L	143	Ternary Complex-Bound E.Coli 70s Ribosome. This Ent		5e-14
2gya_J	140	Structure Of The 50s Subunit Of A Pre-Translocation		8e-13
2j01_P	150	Structure Of The Thermus Thermophilus 70s Ribosome		9e-06
3fin_P	146	T. Thermophilus 70s Ribosome In Complex With Mrna,		7e-05

>pdb|3BBO|N Chain N, Homology Model For The Spinach Chloroplast 50s Subunit Fitted To 9.4a Cryo-Em Map Of The 70s Chlororibosome Length = 257

Iteration: 1
 Score =  215 bits (547), Expect = 2e-56,   Method: Compositional matrix adjust.
 Identities = 122/193 (63%), Positives = 142/193 (73%), Gaps = 11/193 (5%)
Query: 2   ASLLSVTANSLSFPSTPFKGNVKTLMPKPPSSLCVPLKVQQRNKPPQLTVLNQXXXXXXX 61
           ASL+ V+  SL   ++PFKGNVKTL+ KP   LC  LK+Q+     +++V+N+       
Sbjct: 4   ASLIPVS--SLPSLASPFKGNVKTLVAKP--CLCPCLKIQRTKL--RVSVVNKAASAYNV 57
Query: 62  XIVGSGPVTNVRFRLNNLGPQPGSXXXXXXXXXXIAAGQGNSCGFGMRGQKSRSGPGVRK 121
              G     NV FRL+NLGPQPGS          IAAGQG SCGFGMRGQKSRSGPG+ +
Sbjct: 58  KSSGE----NV-FRLDNLGPQPGSRKRPKRKGRGIAAGQGASCGFGMRGQKSRSGPGIMR 112
Query: 122 GFEGGQMPLYRRIPKLRGIAGGMHAGLPKYVPVNLKDIEAAGFLEGDEVSLETLKKKGLI 181
           GFEGGQMPLYRR+PKLRGIAGGMHAGLPKYV VNL DIE AGF +G+EVSLETLK K +I
Sbjct: 113 GFEGGQMPLYRRLPKLRGIAGGMHAGLPKYVNVNLTDIENAGFQDGEEVSLETLKAKRVI 172
Query: 182 NPSGRERKLPLKV 194
           NPSGRERKLPLK+
Sbjct: 173 NPSGRERKLPLKI 185

>pdb|1P85|J Chain J, Real Space Refined Coordinates Of The 50s Subunit Fitted Into The Low Resolution Cryo-Em Map Of The Ef-G.Gtp State Of E. Coli 70s Ribosome Length = 144

Iteration: 1
 Score = 74.3 bits (181), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 47/108 (43%), Positives = 56/108 (51%), Gaps = 7/108 (6%)
Query: 74  FRLNNLGPQPGSXXXXXXXXXXIAAGQGNSCGFGMRGQKSRSGPGVRKGFEGGQMPLYRR 133
            RLN L P  GS          I +G G + G G +GQKSRSG GVR+GFEGGQMPLYRR
Sbjct: 1   MRLNTLSPAEGSKKAGKRLGRGIGSGLGKTGGRGHKGQKSRSGGGVRRGFEGGQMPLYRR 60
Query: 134 IPKLRGIAGGMHAGLPKYVPVNLKDIEAAGFLEGDEVSLETLKKKGLI 181
           +PK     G           + L D+     +EG  V L TLK   +I
Sbjct: 61  LPKF----GFTSRKAAITAEIRLSDLAK---VEGGVVDLNTLKAANII 101

>pdb|3FIK|L Chain L, Ternary Complex-Bound E.Coli 70s Ribosome. This Entry Consists Of The 50s Subunit. Length = 143

Iteration: 1
 Score = 73.9 bits (180), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 47/107 (43%), Positives = 56/107 (52%), Gaps = 7/107 (6%)
Query: 75  RLNNLGPQPGSXXXXXXXXXXIAAGQGNSCGFGMRGQKSRSGPGVRKGFEGGQMPLYRRI 134
           RLN L P  GS          I +G G + G G +GQKSRSG GVR+GFEGGQMPLYRR+
Sbjct: 1   RLNTLSPAEGSKKAGKRLGRGIGSGLGKTGGRGHKGQKSRSGGGVRRGFEGGQMPLYRRL 60
Query: 135 PKLRGIAGGMHAGLPKYVPVNLKDIEAAGFLEGDEVSLETLKKKGLI 181
           PK     G           + L D+     +EG  V L TLK   +I
Sbjct: 61  PKF----GFTSRKAAITAEIRLSDLAK---VEGGVVDLNTLKAANII 100

>pdb|2GYA|J Chain J, Structure Of The 50s Subunit Of A Pre-Translocational E. Coli Ribosome Obtained By Fitting Atomic Models For Rna And Protein Components Into Cryo-Em Map Emd-1056 Length = 140

Iteration: 1
 Score = 70.1 bits (170), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 45/105 (42%), Positives = 54/105 (51%), Gaps = 7/105 (6%)
Query: 77  NNLGPQPGSXXXXXXXXXXIAAGQGNSCGFGMRGQKSRSGPGVRKGFEGGQMPLYRRIPK 136
           N L P  GS          I +G G + G G +GQKSRSG GVR+GFEGGQMPLYRR+PK
Sbjct: 1   NTLSPAEGSKKAGKRLGRGIGSGLGKTGGRGHKGQKSRSGGGVRRGFEGGQMPLYRRLPK 60
Query: 137 LRGIAGGMHAGLPKYVPVNLKDIEAAGFLEGDEVSLETLKKKGLI 181
                G           + L D+     +EG  V L TLK   +I
Sbjct: 61  F----GFTSRKAAITAEIRLSDLAK---VEGGVVDLNTLKAANII 98

>pdb|2J01|P Chain P, Structure Of The Thermus Thermophilus 70s Ribosome Complexed With Mrna, Trna And Paromomycin (Part 2 Of 4). This File Contains The 50s Subunit From Molecule I. Length = 150

Iteration: 1
 Score = 46.6 bits (109), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 41/113 (36%), Positives = 61/113 (53%), Gaps = 10/113 (8%)
Query: 74  FRLNNLGPQPGSXXXXXXXXXXIAAGQGNSCGFGMRGQKSRSGPGVR--KGFEGGQMPLY 131
            +L++L P PG+            +G G +   G +GQKSRSG G++  + FEGG+    
Sbjct: 1   MKLSDLRPNPGANKRRKRVGRGPGSGHGKTATRGHKGQKSRSG-GLKDPRRFEGGRSTTL 59
Query: 132 RRIPKLRGIAGGMHAGL--PKYVPVNLKDIEAAGFLEGDEVSLETLKKKGLIN 182
            R+PK RG+ G +   +  P+Y  VNLKD+      EG EV+ E L + GL+ 
Sbjct: 60  MRLPK-RGMQGQVPGEIKRPRYQGVNLKDL---ARFEG-EVTPELLVRAGLLK 107

>pdb|3FIN|P Chain P, T. Thermophilus 70s Ribosome In Complex With Mrna, Trnas And Ef- Tu.Gdp.Kirromycin Ternary Complex, Fitted To A 6.4 A Cryo-Em Map. This File Contains The 50s Subunit. Length = 146

Iteration: 1
 Score = 43.9 bits (102), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 40/109 (36%), Positives = 58/109 (53%), Gaps = 10/109 (9%)
Query: 78  NLGPQPGSXXXXXXXXXXIAAGQGNSCGFGMRGQKSRSGPGVR--KGFEGGQMPLYRRIP 135
           +L P PG+            +G G +   G +GQKSRSG G++  + FEGG+     R+P
Sbjct: 1   DLRPNPGANKRRKRVGRGPGSGHGKTATRGHKGQKSRSG-GLKDPRRFEGGRSTTLMRLP 59
Query: 136 KLRGIAGGMHAGL--PKYVPVNLKDIEAAGFLEGDEVSLETLKKKGLIN 182
           K RG+ G +   +  P+Y  VNLKD+      EG EV+ E L + GL+ 
Sbjct: 60  K-RGMQGQVPGEIKRPRYQGVNLKDL---ARFEG-EVTPELLVRAGLLK 103

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	209
3bbo_N	257	Ribosomal protein L15; large ribosomal subunit, sp	100.0
3v2d_P	150	50S ribosomal protein L15; ribosome associated inh	100.0
3r8s_L	143	50S ribosomal protein L15; protein biosynthesis, R	100.0
2zjr_I	156	50S ribosomal protein L15; ribosome, large ribosom	100.0
1vq8_L	165	50S ribosomal protein L15P; ribosome 50S, protein-	99.94
2zkr_l	148	60S ribosomal protein L27A; protein-RNA complex, 6	99.91
3j21_L	147	50S ribosomal protein L15P; archaea, archaeal, KIN	99.26
4a17_K	149	L29, RPL27A, 60S ribosomal protein L27A; eukaryoti	99.17
3j21_P	120	50S ribosomal protein L18E; archaea, archaeal, KIN	99.06
1vq8_O	116	50S ribosomal protein L18E; ribosome 50S, protein-	98.98
3jyw_O	121	60S ribosomal protein L18(A); eukaryotic ribosome,	98.25
2zkr_o	188	60S ribosomal protein L18; protein-RNA complex, 60	98.24
3o58_Y	149	60S ribosomal protein L28; ribosomal RNA and prote	97.41
3izc_R	186	60S ribosomal protein RPL18 (L18E); eukaryotic rib	97.39
3iz5_R	188	60S ribosomal protein L18 (L18E); eukaryotic ribos	97.38
4a17_N	181	RPL18, 60S ribosomal protein L5; eukaryotic riboso	97.26
3iz5_O	144	60S ribosomal protein L27A (L15P); eukaryotic ribo	96.48

>3bbo_N Ribosomal protein L15; large ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Spinacea oleracea}

Probab=100.00  E-value=1.8e-63  Score=438.02  Aligned_cols=197  Identities=66%  Similarity=1.029  Sum_probs=122.1

Q ss_pred             CCccccccccCCCCCCCCccccccccCCCCCCCccccceecccCCCCceEEEecccccccceeccCCCCCCCeeecCCCC
Q 028403            1 MASLLSVTANSLSFPSTPFKGNVKTLMPKPPSSLCVPLKVQQRNKPPQLTVLNQAASASASAIVGSGPVTNVRFRLNNLG   80 (209)
Q Consensus         1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rm~L~nL~   80 (209)
                      ||+++++|  |+|+++||||||+++|.+++|+..|  ++++++++  |++|||++|++++.     ..++.++|+||||+
T Consensus         3 ~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~--~~~~~~~~~~~~~~-----~~~~~~~m~L~~L~   71 (257)
T 3bbo_N            3 AASLIPVS--SLPSLASPFKGNVKTLVAKPCLCPC--LKIQRTKL--RVSVVNKAASAYNV-----KSSGENVFRLDNLG   71 (257)
T ss_dssp             -------------------------------------------------------------------------CCCSSSC
T ss_pred             cccccccc--cCCCCCCcccccccccccccccccc--hhhhccCc--cceeEeeccccccc-----ccCCCCceecccCc
Confidence            89999999  6678999999999999999999888  66677655  99999999997553     33778899999999


Q ss_pred             CCCCCCccccccccCCCCCCCCccccCCCCCCCCCCCCCCCcccCCCCCeEEecccccCCCCCCCCCCCeeEeEechhhh
Q 028403           81 PQPGSRKRGKRKGRGIAAGQGNSCGFGMRGQKSRSGPGVRKGFEGGQMPLYRRIPKLRGIAGGMHAGLPKYVPVNLKDIE  160 (209)
Q Consensus        81 p~pGark~rKRvGRG~gSG~GKTsGRGhKGQkaRsG~~~r~GFEGGQtPLyRRlPK~RGF~ng~~~~~~~y~~VNL~~L~  160 (209)
                      |+|||++++||+|||+|||+|||||||||||++|+|+.+++|||||||||||||||+|||+|.++.++++|.+|||++|+
T Consensus        72 p~~Gs~k~kkRvGRG~GSG~GKT~GRGhKGQkaRsG~~~r~GFEGGQmPl~rRlPK~rGF~n~~~~~r~~y~~VNL~kL~  151 (257)
T 3bbo_N           72 PQPGSRKRPKRKGRGIAAGQGASCGFGMRGQKSRSGPGIMRGFEGGQMPLYRRLPKLRGIAGGMHAGLPKYVNVNLTDIE  151 (257)
T ss_dssp             CCCCCCSCCCCCSSCCCCSCSSSCSSSCCCCGGGTSSCSSTTCCSSCSSTTSCCCCCSSCCCCCSSCCSSSSCSCSSCCS
T ss_pred             CCCCCccCCcCCcCcCCCCCCCcCCCCCCCCcCcCCCCCCCceecCCCcchhhcccccccCCccccCcceeeeEeHHHHh
Confidence            99999999999999999999999999999999999999999999999999999999669999766557799999999998


Q ss_pred             hccCCCCCccCHHHHHHCCCCCCCCCCCCCCeEEEcCCeeeeeEEEec
Q 028403          161 AAGFLEGDEVSLETLKKKGLINPSGRERKLPLKVQDTIIVVLFVCFHI  208 (209)
Q Consensus       161 ~~r~~~~~~It~e~L~~~glI~~~~~~~~~~VKILg~Gelt~~l~Ihi  208 (209)
                      ..+|+++++||+++|+++|+|+..+++..++|||||+|+++.+|.|+.
T Consensus       152 ~lr~~eg~~Idle~L~~aGlI~~~gr~~~~~VKVLG~GeLtkkLtVkA  199 (257)
T 3bbo_N          152 NAGFQDGEEVSLETLKAKRVINPSGRERKLPLKILADGELSKKLTIKA  199 (257)
T ss_dssp             CSSTTTTTTTCCSSCCSSSCSSSSCCCCSCCCCCCCSSCCCSSCCCCS
T ss_pred             hcccCCCCEeCHHHHHhCCcccccccccCccEEEEeCCccCCCeEEEE
Confidence            534889999999999999999764322357899999999998888763

>3v2d_P 50S ribosomal protein L15; ribosome associated inhibitor A, RAIA, protein Y, stress RES stationary phase, ribosome hibernation, ribosome; 2.70A {Thermus thermophilus} PDB: 1vsp_J 2hgj_O 2hgq_O 2hgu_O 1vsa_J 2j03_P 2jl6_P 2jl8_P 2v47_P 2v49_P 2wdi_P 2wdj_P 2wdl_P 2wdn_P 2wh2_P 2wh4_P 2wrj_P 2wrl_P 2wro_P 2wrr_P ...

Probab=100.00  E-value=4.3e-50  Score=329.42  Aligned_cols=124  Identities=40%  Similarity=0.614  Sum_probs=113.5

Q ss_pred             eecCCCCCCCCCCccccccccCCCCCCCCccccCCCCCCCCCCCCCCC-cccCCCCCeEEecccccCCCCCC--CCCCCe
Q 028403           74 FRLNNLGPQPGSRKRGKRKGRGIAAGQGNSCGFGMRGQKSRSGPGVRK-GFEGGQMPLYRRIPKLRGIAGGM--HAGLPK  150 (209)
Q Consensus        74 m~L~nL~p~pGark~rKRvGRG~gSG~GKTsGRGhKGQkaRsG~~~r~-GFEGGQtPLyRRlPK~RGF~ng~--~~~~~~  150 (209)
                      |+||||+|+|||+|++||||||+|||+|||||||||||+||+|+.+++ ||||||||||||||| |||+|.+  +.++++
T Consensus         1 m~L~~L~p~~Gs~k~~kRvGRG~gSG~GkT~GrG~KGqkaRsg~~~~~~gFEGGQ~Pl~rRlPK-~GF~~~~~~~~~~~~   79 (150)
T 3v2d_P            1 MKLSDLRPNPGANKRRKRVGRGPGSGHGKTATRGHKGQKSRSGGLKDPRRFEGGRSTTLMRLPK-RGMQGQVPGEIKRPR   79 (150)
T ss_dssp             CCGGGCCCCTTSSCCCCCCSSCTTTSCCTTTTCCSSSTTTSTTCCSCTTTCCTTSCCTTTTSCC-CSCCCCTTCCCCCCC
T ss_pred             CccccCCCCCCCCcCCccccCCCCCCCCccCCCCCCcCcCCCCCCCCCccccCCCCccEEEcCc-cCccCccccccccce
Confidence            899999999999999999999999999999999999999999988999 999999999999999 6999821  246889


Q ss_pred             eEeEechhhhhccCCCCCccCHHHHHHCCCCCCCCCCCCCCeEEEcCCeeeeeEEEec
Q 028403          151 YVPVNLKDIEAAGFLEGDEVSLETLKKKGLINPSGRERKLPLKVQDTIIVVLFVCFHI  208 (209)
Q Consensus       151 y~~VNL~~L~~~r~~~~~~It~e~L~~~glI~~~~~~~~~~VKILg~Gelt~~l~Ihi  208 (209)
                      |.+|||++|+.  |+ + +||+++|+++|||+.     .++|||||+||++ ++.|+.
T Consensus        80 y~~VNL~~L~~--~~-G-~I~~~~L~~~glv~~-----~~~VKvLg~G~l~-~v~V~a  127 (150)
T 3v2d_P           80 YQGVNLKDLAR--FE-G-EVTPELLVRAGLLKK-----GYRLKILGEGEAK-PLKVVA  127 (150)
T ss_dssp             EEEEEHHHHTT--CC-S-EECHHHHHTTTSSCT-----TCEEEEECSSCCC-SCEECB
T ss_pred             EEEEEHHHHhh--cC-C-cccHHHHHHCCCccc-----ccceEEEecCCcc-cEEEEE
Confidence            99999999985  77 5 999999999999975     4699999999999 887763

>3r8s_L 50S ribosomal protein L15; protein biosynthesis, RNA, tRNA, transfer RNA, 23S ribosomal subunit, ribosome recycling factor, RRF, ribosome; 3.00A {Escherichia coli} PDB: 3fik_L 3j19_L 2wwq_L 3oat_L* 3oas_L* 3ofd_L 3ofc_L 3ofr_L* 3ofz_L* 3og0_L 3ofq_L 3r8t_L 3i1n_L 1p85_J 1p86_J 1vs8_L 1vs6_L 2aw4_L 2awb_L 1vt2_L ...

Probab=100.00  E-value=6.8e-50  Score=325.69  Aligned_cols=123  Identities=46%  Similarity=0.652  Sum_probs=113.6

Q ss_pred             ecCCCCCCCCCCccccccccCCCCCCCCccccCCCCCCCCCCCCCCCcccCCCCCeEEecccccCCCCCCCCCCCeeEeE
Q 028403           75 RLNNLGPQPGSRKRGKRKGRGIAAGQGNSCGFGMRGQKSRSGPGVRKGFEGGQMPLYRRIPKLRGIAGGMHAGLPKYVPV  154 (209)
Q Consensus        75 ~L~nL~p~pGark~rKRvGRG~gSG~GKTsGRGhKGQkaRsG~~~r~GFEGGQtPLyRRlPK~RGF~ng~~~~~~~y~~V  154 (209)
                      +||||+|+|||++++||+|||+|||+|||||||||||+||+|+++++||||||||||||||| +||+|.   ++++|.+|
T Consensus         1 ~L~~L~p~~Gs~k~~kRvGRG~gsG~Gkt~GrG~KGqkaRsG~~~~~gFEGGQ~Pl~rRlPK-~GF~~~---~~~~y~~V   76 (143)
T 3r8s_L            1 RLNTLSPAEGSKKAGKRLGRGIGSGLGKTGGRGHKGQKSRSGGGVRRGFEGGQMPLYRRLPK-FGFTSR---KAAITAEI   76 (143)
T ss_dssp             CCSSCCCCTTSSCCCCCCSSCSTTSSCSGGGSCSSSTTTSTTCCCCTTCCTTSCCHHHHSCC-CCCCCS---TGGGEEEC
T ss_pred             CcccCCCCCCCCcCcccccCcCCCCCCCCCCCCCCCCcCCCCCCCCCccccCCCccEEEccc-cccCCc---ccceeEEE
Confidence            58999999999999999999999999999999999999999999999999999999999999 699974   47899999


Q ss_pred             echhhhhccCCCCCccCHHHHHHCCCCCCCCCCCCCCeEEEcCCeeeeeEEEec
Q 028403          155 NLKDIEAAGFLEGDEVSLETLKKKGLINPSGRERKLPLKVQDTIIVVLFVCFHI  208 (209)
Q Consensus       155 NL~~L~~~r~~~~~~It~e~L~~~glI~~~~~~~~~~VKILg~Gelt~~l~Ihi  208 (209)
                      ||++|+.  |+ +++||+++|+++|+|+..    .++|||||+||++.++.|+.
T Consensus        77 NL~~L~~--~~-~~~I~~~~L~~~glv~~~----~~~VKVLg~Gel~~~l~V~a  123 (143)
T 3r8s_L           77 RLSDLAK--VE-GGVVDLNTLKAANIIGIQ----IEFAKVILAGEVTTPVTVRG  123 (143)
T ss_dssp             CSSSSSC--SS-SSEEEHHHHGGGTSSCTT----CCEEECCCCSCCCSCCEEES
T ss_pred             EHHHhhh--cc-CCeecHHHHHHcCccccC----CCceEEeeCCcccccEEEEE
Confidence            9999974  65 489999999999999864    57899999999999998874

>2zjr_I 50S ribosomal protein L15; ribosome, large ribosomal subunit, ribonucleoprotein, RNA-binding, rRNA-binding, tRNA-binding, methylation; 2.91A {Deinococcus radiodurans} SCOP: c.12.1.1 PDB: 1nwx_J* 1nwy_J* 1sm1_J* 1xbp_J* 2zjp_I* 2zjq_I 1nkw_J 3cf5_I* 3dll_I* 3pio_I* 3pip_I* 1pnu_J 1pny_J 1vor_M 1vou_M 1vow_M 1voy_M 1vp0_M

Probab=100.00  E-value=4.4e-46  Score=306.31  Aligned_cols=122  Identities=36%  Similarity=0.572  Sum_probs=109.2

Q ss_pred             eecCCCCCCCCCCccccccccCCCCCCCCccccCCCCCCCCCCCCCCCcccCCCCCeEEecccccCCCCCCCCCCCeeEe
Q 028403           74 FRLNNLGPQPGSRKRGKRKGRGIAAGQGNSCGFGMRGQKSRSGPGVRKGFEGGQMPLYRRIPKLRGIAGGMHAGLPKYVP  153 (209)
Q Consensus        74 m~L~nL~p~pGark~rKRvGRG~gSG~GKTsGRGhKGQkaRsG~~~r~GFEGGQtPLyRRlPK~RGF~ng~~~~~~~y~~  153 (209)
                      |+||||+|+|||++++||+|||+| |+|||||||||||+||+|+.+++||||||||||||||| +||+|    ++++|.+
T Consensus         1 m~L~~L~p~~gs~~~~kRvGRG~g-g~Gkt~GrG~KGqk~RsG~~~~~gfEGGQ~Pl~rrlPK-~GF~n----~~~~~~~   74 (156)
T 2zjr_I            1 MKLHDLKPTPGSRKDRKRVGRGPG-GTDKTAGRGHKGQKSRSGAGKGAFFEGGRSRLIARLPK-RGFNN----VGTTYEV   74 (156)
T ss_dssp             ---CCCCCCSSTTTCCCCSSSCCC-CCCSCSSSCCCCSSSSSCCSCCCSCSCCSSSSTTTSCC-CCCCC----CCCCCCE
T ss_pred             CccccCCCCCCCccCCcccCCCCC-CCCCcCCCCCCCCCCCCCCCCCCceEcCcCCCeEecCC-CCCcC----CceEEEe
Confidence            899999999999999999999999 99999999999999999988899999999999999999 69986    4678999


Q ss_pred             EechhhhhccCCCCCccCHHHHHHCCCCCCCCCCCCCCeEEEcCCeeeeeEEEec
Q 028403          154 VNLKDIEAAGFLEGDEVSLETLKKKGLINPSGRERKLPLKVQDTIIVVLFVCFHI  208 (209)
Q Consensus       154 VNL~~L~~~r~~~~~~It~e~L~~~glI~~~~~~~~~~VKILg~Gelt~~l~Ihi  208 (209)
                      |||++|+.  |.+++ ||+++|+++++|+..    .++|||||+|+++.+|.|+.
T Consensus        75 VNL~~L~~--l~~~~-i~~~~L~~~gli~~~----~~~vKVLG~G~l~~~l~Vka  122 (156)
T 2zjr_I           75 VKLSQLQD--LEDTT-FDRDTLEAYRLVRRK----NRPVKLLASGEISRAVTVHV  122 (156)
T ss_dssp             ECHHHHTT--SCCCC-CCTTTTHHHHHCCCC----SSCCEECCCCCCCCCCCCCC
T ss_pred             echhHHHh--hhcCC-cCHHHHHhCCcEecc----ccceEEeeCCccCcCeEEEE
Confidence            99999974  66666 999999999999873    57899999999998887753

>1vq8_L 50S ribosomal protein L15P; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: c.12.1.1 PDB: 1vq4_L* 1vq5_L* 1vq6_L* 1vq7_L* 1s72_L* 1vq9_L* 1vqk_L* 1vql_L* 1vqm_L* 1vqn_L* 1vqo_L* 1vqp_L* 1yhq_L* 1yi2_L* 1yij_L* 1yit_L* 1yj9_L* 1yjn_L* 1yjw_L* 2otj_L* ...

Probab=99.94  E-value=2.8e-28  Score=201.86  Aligned_cols=108  Identities=18%  Similarity=0.195  Sum_probs=90.7

Q ss_pred             CCccccccccCCCCC-CCCccccCCCCCCCCCCCCCCCcccCCCCCeEEecccccCCCCCCCCCCCeeEeEechhhhhcc
Q 028403           85 SRKRGKRKGRGIAAG-QGNSCGFGMRGQKSRSGPGVRKGFEGGQMPLYRRIPKLRGIAGGMHAGLPKYVPVNLKDIEAAG  163 (209)
Q Consensus        85 ark~rKRvGRG~gSG-~GKTsGRGhKGQkaRsG~~~r~GFEGGQtPLyRRlPK~RGF~ng~~~~~~~y~~VNL~~L~~~r  163 (209)
                      ++++++|+|||+||| +|||+|||||||++|+|+..+.+|     |||+ ||| +||+|.+ ..+.+|.+|||++|+. .
T Consensus         3 ~k~~k~R~gRg~GsG~~GKt~grGhkGqk~raGg~~~~~~-----pl~k-lPK-~GF~~~~-~~r~~~~~VNL~~L~~-l   73 (165)
T 1vq8_L            3 SKKKRQRGSRTHGGGSHKNRRGAGHRGGRGDAGRDKHEFH-----NHEP-LGK-SGFKRPQ-KVQEEAATIDVREIDE-N   73 (165)
T ss_dssp             CHHHHCTTCSSTTCSSTTSSCSGGGGTSSTTTTTTTTTCT-----TSCC-SCC-CCCCCCG-GGCCCEEEEEHHHHHH-T
T ss_pred             ccccCcCCccCCCCCCCCCCCCCCCCCcccccCCCcCCCc-----eeeE-CCC-CCCccCC-cccceeeeEEHHHHHH-H
Confidence            456788999999999 999999999999999998888888     9999 999 6999743 2246899999999974 2


Q ss_pred             C-----------CCCC-ccCHHHHHHCCCCCCCCCCCCCCeEEEcCCeeeeeEEEec
Q 028403          164 F-----------LEGD-EVSLETLKKKGLINPSGRERKLPLKVQDTIIVVLFVCFHI  208 (209)
Q Consensus       164 ~-----------~~~~-~It~e~L~~~glI~~~~~~~~~~VKILg~Gelt~~l~Ihi  208 (209)
                      +           +++. +||+++|+++|+|+       ++|||||+|+++.+|.|+.
T Consensus        74 ~~~~~~~g~~~~~~~~~vId~~~L~~~gli~-------~~vKVLG~G~l~k~l~Vka  123 (165)
T 1vq8_L           74 VTLLAADDVAEVEDGGFRVDVRDVVEEADDA-------DYVKVLGAGQVRHELTLIA  123 (165)
T ss_dssp             TGGGTTSCCCC-----CEEEGGGTCTTCTTS-------SEEEEECCSCCCSCCEEEE
T ss_pred             HHHhhhccccccCCCCeEECHHHHHHCCccC-------CceEEecCCccCCCEEEEE
Confidence            2           4453 89999999999993       4799999999999888763

>2zkr_l 60S ribosomal protein L27A; protein-RNA complex, 60S ribosomal subunit, ribosomal protein/RNA complex; 8.70A {Canis familiaris}

Probab=99.91  E-value=4.2e-26  Score=185.15  Aligned_cols=109  Identities=25%  Similarity=0.162  Sum_probs=75.7

Q ss_pred             CCccccccccCCCCCCCCccccCCCCCCC-CCCCCCCCcccCCCCCeEEe--------cccccCCCCCCCCCCC-ee-Ee
Q 028403           85 SRKRGKRKGRGIAAGQGNSCGFGMRGQKS-RSGPGVRKGFEGGQMPLYRR--------IPKLRGIAGGMHAGLP-KY-VP  153 (209)
Q Consensus        85 ark~rKRvGRG~gSG~GKTsGRGhKGQka-RsG~~~r~GFEGGQtPLyRR--------lPK~RGF~ng~~~~~~-~y-~~  153 (209)
                      ++++++|++||+     +|||+||+||++ |+|+   +||||||||+|++        ||| |||+|.+ ..+. +| .+
T Consensus         3 ~r~~k~rk~RG~-----~t~G~G~~gq~r~~~Gg---~G~aGgq~h~~~~~~k~~p~~lpK-~GF~~~~-~~~~~~~~~~   72 (148)
T 2zkr_l            3 SRLRKTRKLRGH-----VSHGHGRIGKHRKHPGG---RGNAGGMHHHRINFDKYHPGYFGK-VGMKHYH-LKRNQSFCPT   72 (148)
T ss_dssp             ---CHHHHTTTT-----SCSSCCSCSCC--CCSC---SSSTTTTTTTCSSCTTTC--------------------CCCCE
T ss_pred             CccCCcccCCCC-----cCcCCCCCCCCCCCCCC---CCcccCCCCCEEeccccCCCcCCC-CCcCCCC-ccccceecce
Confidence            567788999996     999999999999 8874   7999999999999        999 6999742 2123 45 89


Q ss_pred             EechhhhhccCCCCCccCHHH-H-HHCCCCCCCCCCCCCCeEEEcCCeeee-eEEEe
Q 028403          154 VNLKDIEAAGFLEGDEVSLET-L-KKKGLINPSGRERKLPLKVQDTIIVVL-FVCFH  207 (209)
Q Consensus       154 VNL~~L~~~r~~~~~~It~e~-L-~~~glI~~~~~~~~~~VKILg~Gelt~-~l~Ih  207 (209)
                      |||++|+. .++++.++|++. | .++++|+..   ....|||||+|||+. +|.|.
T Consensus        73 VNl~~L~~-l~~~~~~~~~~~~l~~~~~vI~~~---~~~~vKVLG~Gel~k~~l~Vk  125 (148)
T 2zkr_l           73 VNLDKPWT-LVSEQTRVNAAKNKTGVAPIIDVV---RSGYYKVLGKGKLPKQPVIVK  125 (148)
T ss_dssp             EETHHHHH-HTTTTTSSCTTTTEEEHHHHSTTC---SSSCCEEECCSCCCSSCCEEE
T ss_pred             EEHHHHHh-hhhcCcEEehhhhccccCCeEecc---ccCceEEecCCccccCCEEEE
Confidence            99999985 346667788775 4 578888753   135699999999998 88875

>3j21_L 50S ribosomal protein L15P; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}

Probab=99.26  E-value=1.5e-12  Score=106.10  Aligned_cols=106  Identities=23%  Similarity=0.295  Sum_probs=72.4

Q ss_pred             ccccccccCCCCCCCCccccCCCCCCCCCCCCCCCcccCC---CCC------eEE--ecccccCCCCCCCCCCCeeEeEe
Q 028403           87 KRGKRKGRGIAAGQGNSCGFGMRGQKSRSGPGVRKGFEGG---QMP------LYR--RIPKLRGIAGGMHAGLPKYVPVN  155 (209)
Q Consensus        87 k~rKRvGRG~gSG~GKTsGRGhKGQkaRsG~~~r~GFEGG---QtP------LyR--RlPK~RGF~ng~~~~~~~y~~VN  155 (209)
                      .++.|.=||     --|||.|+.||...+|..--.|..||   |--      -|.  +||| +||+|.+ .++++|.+||
T Consensus         5 ~~k~rk~rG-----~~s~g~G~~~khR~~G~~GGrG~aG~g~~~~H~~~~~~ky~p~~~pK-~GF~n~~-~~~~~~~~VN   77 (147)
T 3j21_L            5 RKKVRKLRG-----SHTHGWGCKKKHRGGGSKGGRGMAGTGKRNKSKWTWTIKYAPDHLGK-RGFSRPP-EVQREVRVVN   77 (147)
T ss_dssp             HHHHTTTTC-----CSSTTSCSTTTSCSHHHHTSSTTTTSSCSSSSSSSCSSSSCSCCSCC-CSCCCCT-TTCCCCCEEE
T ss_pred             ccccccccC-----CCccCCCCCCCcCCCCCCCCCcccCCCccCcccEEEEeecCCCcCCc-CCCCccc-cccceeEEEE
Confidence            345566677     36789999888755432224688888   421      222  7999 6998743 2367899999


Q ss_pred             chhhhhccCCCCCccCHHHHHHCCCCCCCCCC-----CCCCeEEEcCCeeeeeEEEec
Q 028403          156 LKDIEAAGFLEGDEVSLETLKKKGLINPSGRE-----RKLPLKVQDTIIVVLFVCFHI  208 (209)
Q Consensus       156 L~~L~~~r~~~~~~It~e~L~~~glI~~~~~~-----~~~~VKILg~Gelt~~l~Ihi  208 (209)
                      |++|+. .++        +|.++++|+...+.     .+++|||||+|||+.++.|+.
T Consensus        78 L~~L~~-l~~--------~L~~~gli~~~~~~~vid~~~~GvKVLG~G~l~~~v~Vka  126 (147)
T 3j21_L           78 LKFIDE-HLD--------ELMQMGIAYEEGGKIIVDVTQFADKVLGTGKLTRPLVIKA  126 (147)
T ss_dssp             HHHHHH-TTT--------TTTTSCCCSSSSBSEEEEGGGGCCEEECCSCCSSCEEEEE
T ss_pred             HHHHHH-HHH--------HHHHcCcccccCCcceecccccCcEEecCCccCcCEEEEE
Confidence            999985 232        38899999753100     112399999999999988863

>4a17_K L29, RPL27A, 60S ribosomal protein L27A; eukaryotic ribosome, ribosome, eukaryotic initiation factor 60S, translation, large ribosomal subunit; 3.52A {Tetrahymena thermophila} PDB: 4a1a_K 4a1c_K 4a1e_K

Probab=99.17  E-value=8.5e-13  Score=107.81  Aligned_cols=114  Identities=20%  Similarity=0.096  Sum_probs=73.7

Q ss_pred             CccccccccCCC---CC-CCCccccCCCCCCCCCCCC--CCCcccCCCCCeEEecccccCCCCCCCC-CCCeeEeEechh
Q 028403           86 RKRGKRKGRGIA---AG-QGNSCGFGMRGQKSRSGPG--VRKGFEGGQMPLYRRIPKLRGIAGGMHA-GLPKYVPVNLKD  158 (209)
Q Consensus        86 rk~rKRvGRG~g---SG-~GKTsGRGhKGQkaRsG~~--~r~GFEGGQtPLyRRlPK~RGF~ng~~~-~~~~y~~VNL~~  158 (209)
                      +.++.|.-||.-   -| .||+.++||+|++.++|+.  .+.+|+.. +|.  .++| +||++.+.. ++..|++|||++
T Consensus         4 r~~K~rk~RG~~s~G~G~~gkhR~~Gh~GGrG~AGg~~Hhr~~~~ky-~p~--~fGK-~Gfr~~h~~~n~~~~~~VNLdk   79 (149)
T 4a17_K            4 HLKKTRKLRGHVSHGHGRVGKHRKGGCRGGRGKAGGMHHHRILMEKW-HPG--YYGK-LGMRTFHLKKNPLHCPVVNIDK   79 (149)
T ss_dssp             GGSHHHHHTTSSSTTSCSSSCSCCHHHHTSSTTTTTTTTTHHHHHHH-STT--CSSC-CSCCCSSCCCGGGCCCEEEGGG
T ss_pred             cccccccccCCCccCCCCCCCcCCCCCCCCCcccCCCcceEEeeecc-CCC--cCCC-CCccCCCccCCcceeeEEEHHH
Confidence            345556777632   22 4677777788888888765  45578777 898  6999 699874322 234678999999


Q ss_pred             hhhccCCCCCccCHHHHHH-CCCCCCCCCCCCCCeEEEcCCee-eeeEEEe
Q 028403          159 IEAAGFLEGDEVSLETLKK-KGLINPSGRERKLPLKVQDTIIV-VLFVCFH  207 (209)
Q Consensus       159 L~~~r~~~~~~It~e~L~~-~glI~~~~~~~~~~VKILg~Gel-t~~l~Ih  207 (209)
                      |+. .+++...++.+.+.+ +.+|+..   ....|||||+|+| +.++.|.
T Consensus        80 L~~-l~~~~~~~~~~~~~~~~~vId~~---~~g~~KvLG~G~l~~~~v~v~  126 (149)
T 4a17_K           80 LWS-LVSDATRQKYAEDKKKVPVIDVT---KAGFFKVLGKGRLPNQPVVVK  126 (149)
T ss_dssp             HHH-HSCHHHHHHHHHCCSSCCEEEHH---HHTCCEEECCSCCCSSCCEEE
T ss_pred             HHH-HhhhhcchhhhhhcCCceEEEec---cCCeEEEecCCccCCCCEEEE
Confidence            974 244443444444221 2255411   1236999999999 8787775

>3j21_P 50S ribosomal protein L18E; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}

Probab=99.06  E-value=1.2e-11  Score=97.85  Aligned_cols=56  Identities=14%  Similarity=0.089  Sum_probs=46.7

Q ss_pred             CCCeEEecccccCCCCCCCCCCCeeEeEechhhhhccCCCCCccCHHHHHHCCCCCCCCCCCCCCeEEEcCCeeeeeEEE
Q 028403          127 QMPLYRRIPKLRGIAGGMHAGLPKYVPVNLKDIEAAGFLEGDEVSLETLKKKGLINPSGRERKLPLKVQDTIIVVLFVCF  206 (209)
Q Consensus       127 QtPLyRRlPK~RGF~ng~~~~~~~y~~VNL~~L~~~r~~~~~~It~e~L~~~glI~~~~~~~~~~VKILg~Gelt~~l~I  206 (209)
                      .||||||+|| |||++     +++|.+|||++|+. .++++++||.                  ++||||+|+++.++.|
T Consensus        26 ~~Pl~rrlpK-rgF~~-----r~~~~~VnL~~L~~-~~~~g~~i~~------------------~vKVLg~G~l~~kl~V   80 (120)
T 3j21_P           26 GVKIWKDVAW-RLERP-----RRQRAEVNVSKINR-YANDGEMIVV------------------PGSVLGAGKLEKKVIV   80 (120)
T ss_dssp             CCSHHHHHHH-HHHSC-----TTSSEEEEHHHHTT-SSCTTCEEEE------------------EEEEECSSCCCSCCEE
T ss_pred             CCcHHHHHHh-hcCCC-----CCcceeEEHHHHHH-HHhcCCEEEE------------------EEEEcCCCeecCCEEE
Confidence            5899999999 79975     56899999999984 4566777763                  5899999999988877


Q ss_pred             e
Q 028403          207 H  207 (209)
Q Consensus       207 h  207 (209)
                      +
T Consensus        81 ~   81 (120)
T 3j21_P           81 A   81 (120)
T ss_dssp             E
T ss_pred             E
Confidence            5

>1vq8_O 50S ribosomal protein L18E; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: c.12.1.1 PDB: 1vq4_O* 1vq5_O* 1vq6_O* 1vq7_O* 1s72_O* 1vq9_O* 1vqk_O* 1vql_O* 1vqm_O* 1vqn_O* 1vqo_O* 1vqp_O* 1yhq_O* 1yi2_O* 1yij_O* 1yit_O* 1yj9_O* 1yjn_O* 1yjw_O* 2otj_O* ...

Probab=98.98  E-value=3.4e-11  Score=94.55  Aligned_cols=57  Identities=21%  Similarity=0.149  Sum_probs=46.0

Q ss_pred             CCCCeEEecccccCCCCCCCCCCCeeEeEechhhhhccCCCCCccCHHHHHHCCCCCCCCCCCCCCeEEEcCCeeeeeEE
Q 028403          126 GQMPLYRRIPKLRGIAGGMHAGLPKYVPVNLKDIEAAGFLEGDEVSLETLKKKGLINPSGRERKLPLKVQDTIIVVLFVC  205 (209)
Q Consensus       126 GQtPLyRRlPK~RGF~ng~~~~~~~y~~VNL~~L~~~r~~~~~~It~e~L~~~glI~~~~~~~~~~VKILg~Gelt~~l~  205 (209)
                      -|||||||+|| ||  |   .++++|.+|||++|+. .++++++|         +|         +|||||+|+++.++.
T Consensus        22 ~~~Pl~rRlPK-rG--~---~~~~~~~~VnL~~L~~-~~~~g~~i---------lv---------~vKVLg~G~l~k~l~   76 (116)
T 1vq8_O           22 SGGAVWGDVAE-RL--E---KPRRTHAEVNLGRIER-YAQEDETV---------VV---------PGKVLGSGVLQKDVT   76 (116)
T ss_dssp             SSCHHHHHHHH-HH--T---SCTTTSEEEEHHHHHH-HCCTTSEE---------EE---------EEEEECCSCCCSCCE
T ss_pred             cCCCHhhhccc-CC--C---CCCceeeeEeHHHHHH-HccCCCEE---------EE---------EEEEeeCCeecCCEE
Confidence            48999999999 69  2   3467899999999984 36677766         22         599999999998887


Q ss_pred             Ee
Q 028403          206 FH  207 (209)
Q Consensus       206 Ih  207 (209)
                      |+
T Consensus        77 V~   78 (116)
T 1vq8_O           77 VA   78 (116)
T ss_dssp             EE
T ss_pred             EE
Confidence            75

>3jyw_O 60S ribosomal protein L18(A); eukaryotic ribosome, RACK1 protein, flexible fitting; 8.90A {Thermomyces lanuginosus} PDB: 1s1i_O

Probab=98.25  E-value=3.4e-08  Score=78.33  Aligned_cols=55  Identities=15%  Similarity=0.132  Sum_probs=41.7

Q ss_pred             CCeEEecccccCCCCCCCCCCCeeEeEechhhhhccCC----CCCccCHHHHHHCCCCCCCCCCCCCCeEEEcCCeee--
Q 028403          128 MPLYRRIPKLRGIAGGMHAGLPKYVPVNLKDIEAAGFL----EGDEVSLETLKKKGLINPSGRERKLPLKVQDTIIVV--  201 (209)
Q Consensus       128 tPLyRRlPK~RGF~ng~~~~~~~y~~VNL~~L~~~r~~----~~~~It~e~L~~~glI~~~~~~~~~~VKILg~Gelt--  201 (209)
                      -|||||+|| |||.+     +.+|++|||++|+. .++    ++++|          +        .++||||+|+++  
T Consensus        22 apl~rrvpK-RgF~s-----r~~~~~VnLs~L~~-~~~~~g~~g~~v----------v--------v~~KVlg~G~l~~~   76 (121)
T 3jyw_O           22 APFNKVVLK-ALFLS-----KINRPPVSVSRIAR-ALKQEGAANKTV----------V--------VVGTVTDDARIFEF   76 (121)
T ss_dssp             CHHHHHHHH-TTTSC-----STTSCCBCHHHHHH-HTTTTSCSSSEE----------E--------ESSCBCCCSCCCSS
T ss_pred             ChHHHHHHH-HHCCC-----CCccceEEHHHHHH-HhhccCCCCCEE----------E--------EEEEEcCCceEccc
Confidence            499999999 79974     56899999999974 233    34433          1        357999999997  


Q ss_pred             eeEEEe
Q 028403          202 LFVCFH  207 (209)
Q Consensus       202 ~~l~Ih  207 (209)
                      .++.|.
T Consensus        77 ~kl~V~   82 (121)
T 3jyw_O           77 PKTTVA   82 (121)
T ss_dssp             SCCCEE
T ss_pred             CCEEEE
Confidence            577664

>2zkr_o 60S ribosomal protein L18; protein-RNA complex, 60S ribosomal subunit, ribosomal protein/RNA complex; 8.70A {Canis familiaris}

Probab=98.24  E-value=4.2e-08  Score=83.08  Aligned_cols=57  Identities=14%  Similarity=0.097  Sum_probs=42.6

Q ss_pred             CCeEEecccccCCCCCCCCCCCeeEeEechhhhhccCC--CCCccCHHHHHHCCCCCCCCCCCCCCeEEEcCCeeee--e
Q 028403          128 MPLYRRIPKLRGIAGGMHAGLPKYVPVNLKDIEAAGFL--EGDEVSLETLKKKGLINPSGRERKLPLKVQDTIIVVL--F  203 (209)
Q Consensus       128 tPLyRRlPK~RGF~ng~~~~~~~y~~VNL~~L~~~r~~--~~~~It~e~L~~~glI~~~~~~~~~~VKILg~Gelt~--~  203 (209)
                      -|||||||| |||+|     +++|.+|||++|+.  |.  ++++.+        ++       .+.+||||+|||+.  +
T Consensus        41 apl~rrlpK-RgF~s-----r~~y~~VNLs~L~~--~~~~~g~~~~--------ii-------v~~~KVLg~GeL~kvpk   97 (188)
T 2zkr_o           41 STFNQVVLK-RLFMS-----RTNRPPLSLSRMIR--KMKLPGRENK--------TA-------VVVGTVTDDVRILEVPK   97 (188)
T ss_dssp             CHHHHHHHH-HHHSC-----TTTSCEEEHHHHHS--CSSSCCSTTS--------EE-------EEEEEEECSSCCCCCSS
T ss_pred             CCHHHHHHH-hhCCC-----ccceeeeeHHHHHH--HhhhcCCCCc--------EE-------EeecEEECCceecccCC
Confidence            499999999 79975     56899999999974  43  233321        11       13579999999998  7


Q ss_pred             EEEe
Q 028403          204 VCFH  207 (209)
Q Consensus       204 l~Ih  207 (209)
                      +.|.
T Consensus        98 LtV~  101 (188)
T 2zkr_o           98 LKVC  101 (188)
T ss_dssp             CCEE
T ss_pred             eEEE
Confidence            7764

>3o58_Y 60S ribosomal protein L28; ribosomal RNA and proteins, ribosome; 4.00A {Saccharomyces cerevisiae} PDB: 3o5h_Y 3izc_O 3izs_O 3u5e_a 3u5i_a 4b6a_a 1s1i_V 3jyw_V

Probab=97.41  E-value=8.8e-05  Score=60.66  Aligned_cols=108  Identities=19%  Similarity=0.116  Sum_probs=56.1

Q ss_pred             ccccccccCCCCCCCCccccCCCCCCCCCCCCCCCcccCCC----CCeEE----ecccccCCCCCCCCCC-Ce-eEeEec
Q 028403           87 KRGKRKGRGIAAGQGNSCGFGMRGQKSRSGPGVRKGFEGGQ----MPLYR----RIPKLRGIAGGMHAGL-PK-YVPVNL  156 (209)
Q Consensus        87 k~rKRvGRG~gSG~GKTsGRGhKGQkaRsG~~~r~GFEGGQ----tPLyR----RlPK~RGF~ng~~~~~-~~-y~~VNL  156 (209)
                      .++.|.=||.     -|+|.|..|+..-.  .--.|--||+    +=|..    -+.| .||... +..+ .. ..+|||
T Consensus         5 ~kKtrK~RG~-----~s~G~G~~gkhR~h--~GGrG~AGg~~Hh~~~~~Ky~p~~fGK-~G~r~~-h~~~n~~~~~~INl   75 (149)
T 3o58_Y            5 FTKTRKHRGH-----VSAGKGRIGKHRKH--PGGRGMAGGEHHHRINMDKYHPGYFGK-VGMRYF-HKQQAHFWKPVLNL   75 (149)
T ss_dssp             SGGGSSSSSC-----SSSBTTBSCCSSCS--SSSSSSCCCSSSSCCCSCCCTTSSSSC-CSCCCC-CCCCCCCCCCSTTT
T ss_pred             ccccccccCC-----CccCCCCCCCCCCC--CCCCccccCccceeEEEeeeCCCccCC-CCcccC-cccccccccceEEH
Confidence            3444555663     56777776653211  1124556665    11111    1457 488753 3322 23 468999


Q ss_pred             hhhhhccCCCCCccCHHHH---HHCCCCCCCCCCCCCCeEEEcCCee-eeeEEEe
Q 028403          157 KDIEAAGFLEGDEVSLETL---KKKGLINPSGRERKLPLKVQDTIIV-VLFVCFH  207 (209)
Q Consensus       157 ~~L~~~r~~~~~~It~e~L---~~~glI~~~~~~~~~~VKILg~Gel-t~~l~Ih  207 (209)
                      ++|+. .+++.......+-   -++-+|...   ....|||||+|+| +.++.|.
T Consensus        76 dkL~~-lv~~~~~~~~a~~~~~~~~~vID~~---~~g~vKVLG~G~l~~~~v~Vk  126 (149)
T 3o58_Y           76 DKLWT-LIPEDKRDQYLKSASKETAPVIDTL---AAGYGKILGKGRIPNVPVIVK  126 (149)
T ss_dssp             THHHH-CSSCCSCSSCTTSSTTSSCCBCCCS---SSCSCCCCCCCCCCSCCEEEC
T ss_pred             HHHHH-HhHHHHhhhhhhhccCCCCcEEEEe---cccceEEEcCCccCCCCEEEE
Confidence            99974 2333322222110   012233321   2346999999999 8888775

>4a17_N RPL18, 60S ribosomal protein L5; eukaryotic ribosome, ribosome, eukaryotic initiation factor 60S, translation, large ribosomal subunit; 3.52A {Tetrahymena thermophila} PDB: 4a1a_N 4a1c_N 4a1e_N

Probab=97.26  E-value=1.2e-05  Score=67.82  Aligned_cols=56  Identities=14%  Similarity=0.111  Sum_probs=41.3

Q ss_pred             CCCeEEecccccCCCCCCCCCCCeeEeEechhhhhccCCC---CCccCHHHHHHCCCCCCCCCCCCCCeEEEcCCeee--
Q 028403          127 QMPLYRRIPKLRGIAGGMHAGLPKYVPVNLKDIEAAGFLE---GDEVSLETLKKKGLINPSGRERKLPLKVQDTIIVV--  201 (209)
Q Consensus       127 QtPLyRRlPK~RGF~ng~~~~~~~y~~VNL~~L~~~r~~~---~~~It~e~L~~~glI~~~~~~~~~~VKILg~Gelt--  201 (209)
                      .-|||+++|| |+|.+     +.+|++|||++|+. .+++   +++|          |        .++||||+|+|+  
T Consensus        42 ~apf~r~V~K-RLf~s-----r~nr~pVnLsrI~r-~~~~~e~gk~v----------V--------v~gKVLg~G~l~~v   96 (181)
T 4a17_N           42 DSKFNQNILK-RLSSS-----RLNKFPLSLSRIVK-NLNETNKEQVI----------V--------STSTVTNDERLLTV   96 (181)
T ss_dssp             CCHHHHHHHH-HHSCC-----GGGSCCEEHHHHHH-SCCHHHHHSEE----------E--------ESSEEECCTTCCSC
T ss_pred             CChHHHHHHH-HHcCC-----ccccCcccHHHHHH-HhccccCCCEE----------E--------EEEEEcCCceEccc
Confidence            4699999999 79963     56899999999985 2332   3333          1        367999999997  


Q ss_pred             eeEEEe
Q 028403          202 LFVCFH  207 (209)
Q Consensus       202 ~~l~Ih  207 (209)
                      .++.|.
T Consensus        97 ~kl~V~  102 (181)
T 4a17_N           97 PKLTVC  102 (181)
T ss_dssp             CCCEEE
T ss_pred             CCEEEE
Confidence            456554

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	209
d2gycj1	140	c.12.1.1 (J:4-143) Ribosomal protein L15 (L15p) {E	2e-25
d2j01p1	146	c.12.1.1 (P:5-150) Ribosomal protein L15 (L15p) {T	4e-20
d2zjri1	141	c.12.1.1 (I:4-144) Ribosomal protein L15 (L15p) {D	1e-19
d1vqol1	150	c.12.1.1 (L:1-150) Ribosomal protein L15 (L15p) {A	2e-08

>d2gycj1 c.12.1.1 (J:4-143) Ribosomal protein L15 (L15p) {Escherichia coli [TaxId: 562]} Length = 140

class: Alpha and beta proteins (a/b)
fold: Ribosomal proteins L15p and L18e
superfamily: Ribosomal proteins L15p and L18e
family: Ribosomal proteins L15p and L18e
domain: Ribosomal protein L15 (L15p)
species: Escherichia coli [TaxId: 562]

 Score = 94.3 bits (234), Expect = 2e-25
 Identities = 51/106 (48%), Positives = 61/106 (57%), Gaps = 7/106 (6%)

Query: 77  NNLGPQPGSRKRGKRKGRGIAAGQGNSCGFGMRGQKSRSGPGVRKGFEGGQMPLYRRIPK 136
           N L P  GS+K GKR GRGI +G G + G G +GQKSRSG GVR+GFEGGQMPLYRR+PK
Sbjct: 1   NTLSPAEGSKKAGKRLGRGIGSGLGKTGGRGHKGQKSRSGGGVRRGFEGGQMPLYRRLPK 60

Query: 137 LRGIAGGMHAGLPKYVPVNLKDIEAAGFLEGDEVSLETLKKKGLIN 182
                            + L D+     +EG  V L TLK   +I 
Sbjct: 61  FG----FTSRKAAITAEIRLSDLA---KVEGGVVDLNTLKAANIIG 99

>d2j01p1 c.12.1.1 (P:5-150) Ribosomal protein L15 (L15p) {Thermus thermophilus [TaxId: 274]} Length = 146

class: Alpha and beta proteins (a/b)
fold: Ribosomal proteins L15p and L18e
superfamily: Ribosomal proteins L15p and L18e
family: Ribosomal proteins L15p and L18e
domain: Ribosomal protein L15 (L15p)
species: Thermus thermophilus [TaxId: 274]

 Score = 80.4 bits (198), Expect = 4e-20
 Identities = 41/109 (37%), Positives = 53/109 (48%), Gaps = 6/109 (5%)

Query: 78  NLGPQPGSRKRGKRKGRGIAAGQGNSCGFGMRGQKSRSGPGVRK-GFEGGQMPLYRRIPK 136
           +L P PG+ KR KR GRG  +G G +   G +GQKSRSG       FEGG+     R+PK
Sbjct: 1   DLRPNPGANKRRKRVGRGPGSGHGKTATRGHKGQKSRSGGLKDPRRFEGGRSTTLMRLPK 60

Query: 137 LRGI-AGGMHAGLPKYVPVNLKDIEAAGFLEGDEVSLETLKKKGLINPS 184
                        P+Y  VNLKD+         EV+ E L + GL+   
Sbjct: 61  RGMQGQVPGEIKRPRYQGVNLKDLARFEG----EVTPELLVRAGLLKKG 105

>d2zjri1 c.12.1.1 (I:4-144) Ribosomal protein L15 (L15p) {Deinococcus radiodurans [TaxId: 1299]} Length = 141

class: Alpha and beta proteins (a/b)
fold: Ribosomal proteins L15p and L18e
superfamily: Ribosomal proteins L15p and L18e
family: Ribosomal proteins L15p and L18e
domain: Ribosomal protein L15 (L15p)
species: Deinococcus radiodurans [TaxId: 1299]

 Score = 79.3 bits (195), Expect = 1e-19
 Identities = 41/123 (33%), Positives = 54/123 (43%), Gaps = 11/123 (8%)

Query: 78  NLGPQPGSRKRGKRKGRGIAAGQGNSCGFGMRGQKSRSGPGVRKGFEGGQMPLYRRIPKL 137
           +L P PGSRK  KR GRG   G   + G G +GQKSRSG G    FEGG+  L  R+PK 
Sbjct: 2   DLKPTPGSRKDRKRVGRGPG-GTDKTAGRGHKGQKSRSGAGKGAFFEGGRSRLIARLPKR 60

Query: 138 RGIAGGMHAGLPKYVPVNLKDIEAAGFLEGDEVSLETL-----KKKGLINPSGRERKLPL 192
                G +     Y  V L  ++       D  +LE       K + +   +  E    +
Sbjct: 61  -----GFNNVGTTYEVVKLSQLQDLEDTTFDRDTLEAYRLVRRKNRPVKLLASGEISRAV 115

Query: 193 KVQ 195
            V 
Sbjct: 116 TVH 118

>d1vqol1 c.12.1.1 (L:1-150) Ribosomal protein L15 (L15p) {Archaeon Haloarcula marismortui [TaxId: 2238]} Length = 150

class: Alpha and beta proteins (a/b)
fold: Ribosomal proteins L15p and L18e
superfamily: Ribosomal proteins L15p and L18e
family: Ribosomal proteins L15p and L18e
domain: Ribosomal protein L15 (L15p)
species: Archaeon Haloarcula marismortui [TaxId: 2238]

 Score = 49.6 bits (118), Expect = 2e-08
 Identities = 15/105 (14%), Positives = 26/105 (24%), Gaps = 13/105 (12%)

Query: 85  SRKRGKRKGRGIAAGQG-NSCGFGMRGQKSRSGPGVRKGFEGGQMPLYRRIPKLRGIAGG 143
           S+K+ +R  R    G   N  G G RG +  +G          +   +  + K       
Sbjct: 2   SKKKRQRGSRTHGGGSHKNRRGAGHRGGRGDAGRDKH------EFHNHEPLGKSGFKRPQ 55

Query: 144 MHAGLPKYVPVNLKDIEAAGFLEG------DEVSLETLKKKGLIN 182
                   + V   D               D      ++      
Sbjct: 56  KVQEEAATIDVREIDENVTLLAADDVAEVEDGGFRVDVRDVVEEA 100

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	209
d2zjri1	141	Ribosomal protein L15 (L15p) {Deinococcus radiodur	100.0
d2gycj1	140	Ribosomal protein L15 (L15p) {Escherichia coli [Ta	100.0
d2j01p1	146	Ribosomal protein L15 (L15p) {Thermus thermophilus	100.0
d1vqol1	150	Ribosomal protein L15 (L15p) {Archaeon Haloarcula	99.91
d1vqoo1	115	Ribosomal protein L18e {Archaeon Haloarcula marism	87.91

>d2zjri1 c.12.1.1 (I:4-144) Ribosomal protein L15 (L15p) {Deinococcus radiodurans [TaxId: 1299]}

class: Alpha and beta proteins (a/b)
fold: Ribosomal proteins L15p and L18e
superfamily: Ribosomal proteins L15p and L18e
family: Ribosomal proteins L15p and L18e
domain: Ribosomal protein L15 (L15p)
species: Deinococcus radiodurans [TaxId: 1299]

Probab=100.00  E-value=1.9e-43  Score=282.05  Aligned_cols=119  Identities=36%  Similarity=0.559  Sum_probs=108.7

Q ss_pred             CCCCCCCCCCccccccccCCCCCCCCccccCCCCCCCCCCCCCCCcccCCCCCeEEecccccCCCCCCCCCCCeeEeEec
Q 028403           77 NNLGPQPGSRKRGKRKGRGIAAGQGNSCGFGMRGQKSRSGPGVRKGFEGGQMPLYRRIPKLRGIAGGMHAGLPKYVPVNL  156 (209)
Q Consensus        77 ~nL~p~pGark~rKRvGRG~gSG~GKTsGRGhKGQkaRsG~~~r~GFEGGQtPLyRRlPK~RGF~ng~~~~~~~y~~VNL  156 (209)
                      |||+|+|||++++||+|||++ |+|||||||||||+||+|+..++||||||||||||+|| |||+|    +..+|.+|||
T Consensus         1 h~L~~~~gs~~~~kR~gRG~g-g~Gkt~GrG~KGqk~RsG~~~~~gfeGGQ~Pl~rrlPK-rGf~~----~~~~~~~inl   74 (141)
T d2zjri1           1 HDLKPTPGSRKDRKRVGRGPG-GTDKTAGRGHKGQKSRSGAGKGAFFEGGRSRLIARLPK-RGFNN----VGTTYEVVKL   74 (141)
T ss_dssp             CCCCCCSSTTTCCCCSSSCCC-CCCSCSSSCCCCSSSSSCCSCCCSCSCCSSSSTTTSCC-CCCCC----CCCCCCEECH
T ss_pred             CCCCCCCCCccCcccccCCCC-CCCCCCCCCCCCCCCCCCCCCCCceecccccceecCCc-cCCCc----ccceEEEEEh
Confidence            799999999999999999987 89999999999999999998999999999999999999 69986    3568999999


Q ss_pred             hhhhhccCCCCCccCHHHHHHCCCCCCCCCCCCCCeEEEcCCeeeeeEEEec
Q 028403          157 KDIEAAGFLEGDEVSLETLKKKGLINPSGRERKLPLKVQDTIIVVLFVCFHI  208 (209)
Q Consensus       157 ~~L~~~r~~~~~~It~e~L~~~glI~~~~~~~~~~VKILg~Gelt~~l~Ihi  208 (209)
                      ++|+.  ++ +.+||+++|.+.++|...    .++|||||+||++.++.||+
T Consensus        75 ~~l~~--~~-~~~i~~~~L~~~~li~~~----~~~VKiLg~Gel~~kl~I~v  119 (141)
T d2zjri1          75 SQLQD--LE-DTTFDRDTLEAYRLVRRK----NRPVKLLASGEISRAVTVHV  119 (141)
T ss_dssp             HHHTT--SC-CCCCCTTTTHHHHHCCCC----SSCCEECCCCCCCCCCCCCC
T ss_pred             hhhhc--cc-ccchhhhhhhhhceeccC----CCCeEEccCCcccCCEEEEE
Confidence            99985  43 467999999999999874    67999999999999999886

>d2gycj1 c.12.1.1 (J:4-143) Ribosomal protein L15 (L15p) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Ribosomal proteins L15p and L18e
superfamily: Ribosomal proteins L15p and L18e
family: Ribosomal proteins L15p and L18e
domain: Ribosomal protein L15 (L15p)
species: Escherichia coli [TaxId: 562]

Probab=100.00  E-value=2.4e-43  Score=279.69  Aligned_cols=121  Identities=46%  Similarity=0.658  Sum_probs=110.3

Q ss_pred             CCCCCCCCCCccccccccCCCCCCCCccccCCCCCCCCCCCCCCCcccCCCCCeEEecccccCCCCCCCCCCCeeEeEec
Q 028403           77 NNLGPQPGSRKRGKRKGRGIAAGQGNSCGFGMRGQKSRSGPGVRKGFEGGQMPLYRRIPKLRGIAGGMHAGLPKYVPVNL  156 (209)
Q Consensus        77 ~nL~p~pGark~rKRvGRG~gSG~GKTsGRGhKGQkaRsG~~~r~GFEGGQtPLyRRlPK~RGF~ng~~~~~~~y~~VNL  156 (209)
                      |||+|+|||++++||+|||++||+|||||||||||+||+|+.+++||||||||||+|+|| +||++   .++..|.+|||
T Consensus         1 n~l~~~~gs~k~~kR~gRG~gsg~Gkt~GrG~kGqk~R~g~~~r~gfEGGQ~Pl~rr~PK-~Gf~~---~~~~~~~~i~l   76 (140)
T d2gycj1           1 NTLSPAEGSKKAGKRLGRGIGSGLGKTGGRGHKGQKSRSGGGVRRGFEGGQMPLYRRLPK-FGFTS---RKAAITAEIRL   76 (140)
T ss_dssp             CCSCCSCCSSSCSCCSSSCCCSSSCCSSCSSCCCCSCCSSCSSSCSCCSSCSSSSSSSSS-CCCCC---CCCCCCCCBCC
T ss_pred             CCCCCCCCCccCcccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCcccCCcccceeeCce-eeccc---cccceeeeEEe
Confidence            799999999999999999999999999999999999999998999999999999999999 59986   34678999999


Q ss_pred             hhhhhccCCCCCccCHHHHHHCCCCCCCCCCCCCCeEEEcCCeeeeeEEEec
Q 028403          157 KDIEAAGFLEGDEVSLETLKKKGLINPSGRERKLPLKVQDTIIVVLFVCFHI  208 (209)
Q Consensus       157 ~~L~~~r~~~~~~It~e~L~~~glI~~~~~~~~~~VKILg~Gelt~~l~Ihi  208 (209)
                      .+|+.  + ++++||+++|++++||...    .++||||+.||++.++.|++
T Consensus        77 ~~l~~--~-~~~~i~~~~L~~~gli~~~----~~~vKiLg~Gel~~ki~i~~  121 (140)
T d2gycj1          77 SDLAK--V-EGGVVDLNTLKAANIIGIQ----IEFAKVILAGEVTTPVTVRG  121 (140)
T ss_dssp             SSSSS--S-SSCSCCSTTSCTTTTCCCS----SCCCBCCCSCCCCCCCCCCC
T ss_pred             eeehh--c-ccccccHHHHhhcCeeecc----ceeeEEeccCcccCCEEEEE
Confidence            99973  4 5678999999999999863    67899999999999988775

>d2j01p1 c.12.1.1 (P:5-150) Ribosomal protein L15 (L15p) {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: Ribosomal proteins L15p and L18e
superfamily: Ribosomal proteins L15p and L18e
family: Ribosomal proteins L15p and L18e
domain: Ribosomal protein L15 (L15p)
species: Thermus thermophilus [TaxId: 274]

Probab=100.00  E-value=2.9e-42  Score=275.82  Aligned_cols=120  Identities=39%  Similarity=0.598  Sum_probs=104.1

Q ss_pred             CCCCCCCCCccccccccCCCCCCCCccccCCCCCCCCCCCCC-CCcccCCCCCeEEecccccCCCCCCCC--CCCeeEeE
Q 028403           78 NLGPQPGSRKRGKRKGRGIAAGQGNSCGFGMRGQKSRSGPGV-RKGFEGGQMPLYRRIPKLRGIAGGMHA--GLPKYVPV  154 (209)
Q Consensus        78 nL~p~pGark~rKRvGRG~gSG~GKTsGRGhKGQkaRsG~~~-r~GFEGGQtPLyRRlPK~RGF~ng~~~--~~~~y~~V  154 (209)
                      ||+|+|||++++||+|||+|||+|||||||||||+||+|+.. +.||||||||||||||| +||+|.+..  ++.+|.+|
T Consensus         1 ~l~~~~gs~k~~kR~GRG~gsg~Gkt~GrG~kGqkaRsG~~~~~~gFEGGQ~Pl~rrlPK-~Gf~~~~~~~~~~~~~~~i   79 (146)
T d2j01p1           1 DLRPNPGANKRRKRVGRGPGSGHGKTATRGHKGQKSRSGGLKDPRRFEGGRSTTLMRLPK-RGMQGQVPGEIKRPRYQGV   79 (146)
T ss_dssp             CCSSSCCCSSCCCCCCCCSCSSSSSCTTCSSCCSSSCSSCCCCSSSCCSSSCTTCCSCCC-CCSCCCSSCSCCCCCEEEE
T ss_pred             CCCCCCCCCcCcccccCCCCCCCCccCCCCCCCCCcCCCCCcCCchhccCCCCceeccch-hhhhcccccceeeEEeehh
Confidence            799999999999999999999999999999999999999654 45999999999999999 699976432  35679999


Q ss_pred             echhhhhccCCCCCccCHHHHHHCCCCCCCCCCCCCCeEEEcCCeeeeeEEEec
Q 028403          155 NLKDIEAAGFLEGDEVSLETLKKKGLINPSGRERKLPLKVQDTIIVVLFVCFHI  208 (209)
Q Consensus       155 NL~~L~~~r~~~~~~It~e~L~~~glI~~~~~~~~~~VKILg~Gelt~~l~Ihi  208 (209)
                      ||++|+.  ++  .+||+++|++.+||++     .++|||||+||+. ++.|++
T Consensus        80 nl~~l~~--~~--~~~~~~~l~~~glik~-----~~~vKvLg~Ge~k-~i~I~v  123 (146)
T d2j01p1          80 NLKDLAR--FE--GEVTPELLVRAGLLKK-----GYRLKILGEGEAK-PLKVVA  123 (146)
T ss_dssp             ETTTTTT--SC--SCCCTTTTTTSSSCSS-----CCEEEEECSSCCC-SSCCCC
T ss_pred             hhhhhhh--cc--cchhhHHHHHhCcccc-----CceEEEecCCceE-eEEEEE
Confidence            9999963  43  4689999999999976     4679999999985 776654

>d1vqol1 c.12.1.1 (L:1-150) Ribosomal protein L15 (L15p) {Archaeon Haloarcula marismortui [TaxId: 2238]}

class: Alpha and beta proteins (a/b)
fold: Ribosomal proteins L15p and L18e
superfamily: Ribosomal proteins L15p and L18e
family: Ribosomal proteins L15p and L18e
domain: Ribosomal protein L15 (L15p)
species: Archaeon Haloarcula marismortui [TaxId: 2238]

Probab=99.91  E-value=8.7e-26  Score=178.63  Aligned_cols=112  Identities=16%  Similarity=0.149  Sum_probs=84.5

Q ss_pred             CCccccccccCCCCCCCCc-cccCCCCCCCCCCCCCCCcccCCCCCeEEecccccCCCCCCCCCCCeeEeEechhhhhc-
Q 028403           85 SRKRGKRKGRGIAAGQGNS-CGFGMRGQKSRSGPGVRKGFEGGQMPLYRRIPKLRGIAGGMHAGLPKYVPVNLKDIEAA-  162 (209)
Q Consensus        85 ark~rKRvGRG~gSG~GKT-sGRGhKGQkaRsG~~~r~GFEGGQtPLyRRlPK~RGF~ng~~~~~~~y~~VNL~~L~~~-  162 (209)
                      |+++++|+|||+|||+++| +|||||||++|+|+ ...+|||+|     +||| +||++.++ +..+|.++||.+|+.. 
T Consensus         2 skk~k~R~gRg~G~G~~~~~~GrG~KGqk~rsG~-~~~~f~g~~-----~lpK-~g~~~~~~-~~~~~~~inl~~L~~~~   73 (150)
T d1vqol1           2 SKKKRQRGSRTHGGGSHKNRRGAGHRGGRGDAGR-DKHEFHNHE-----PLGK-SGFKRPQK-VQEEAATIDVREIDENV   73 (150)
T ss_dssp             CTGGGCTTCSSTTCSSTTSSSSGGGGTSSTTTTT-TTTTCTTSC-----CSSC-CCCCCCGG-GCCCEEEEEHHHHHHTT
T ss_pred             CccccccCCcCcCCCCCCCCCCCCCCCCCCcccC-ccCCCcCCc-----cCCc-cCcccccc-ccceeeeccHHHHHHHH
Confidence            6788999999999998776 89999999999985 466888643     5899 59886543 3678999999999741 


Q ss_pred             -cC------CCCCccCHHHHHHCCCCCCCCCCCCCCeEEEcCCeeeeeEEEec
Q 028403          163 -GF------LEGDEVSLETLKKKGLINPSGRERKLPLKVQDTIIVVLFVCFHI  208 (209)
Q Consensus       163 -r~------~~~~~It~e~L~~~glI~~~~~~~~~~VKILg~Gelt~~l~Ihi  208 (209)
                       .+      +....++..+|.+.+++...    .++|||||+||++.++.|++
T Consensus        74 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~----~~~vKlLG~G~l~~~l~Ika  122 (150)
T d1vqol1          74 TLLAADDVAEVEDGGFRVDVRDVVEEADD----ADYVKVLGAGQVRHELTLIA  122 (150)
T ss_dssp             TTCTTSCCCC-----CEEEGGGTCTTCSS----SSEEEEECCSCCCSCCEEEE
T ss_pred             hhhccccccccccchhhHHHHhhcccccc----ccceEEecCCccCcCEEEEE
Confidence             01      11233444557778887653    57899999999999999875

>d1vqoo1 c.12.1.1 (O:1-115) Ribosomal protein L18e {Archaeon Haloarcula marismortui [TaxId: 2238]}

class: Alpha and beta proteins (a/b)
fold: Ribosomal proteins L15p and L18e
superfamily: Ribosomal proteins L15p and L18e
family: Ribosomal proteins L15p and L18e
domain: Ribosomal protein L18e
species: Archaeon Haloarcula marismortui [TaxId: 2238]

Probab=87.91  E-value=0.059  Score=40.40  Aligned_cols=41  Identities=27%  Similarity=0.186  Sum_probs=29.7

Q ss_pred             CCeeEeEechhhhhccCCCCCccCHHHHHHCCCCCCCCCCCCCCeEEEcCCeeeeeEEEe
Q 028403          148 LPKYVPVNLKDIEAAGFLEGDEVSLETLKKKGLINPSGRERKLPLKVQDTIIVVLFVCFH  207 (209)
Q Consensus       148 ~~~y~~VNL~~L~~~r~~~~~~It~e~L~~~glI~~~~~~~~~~VKILg~Gelt~~l~Ih  207 (209)
                      ++.+.+|||++|+.. ..++++|         +         .+.||||+|+++.++.|.
T Consensus        37 rr~r~~VnLski~~~-~k~~~~v---------v---------vpgKVLg~G~l~~k~~V~   77 (115)
T d1vqoo1          37 RRTHAEVNLGRIERY-AQEDETV---------V---------VPGKVLGSGVLQKDVTVA   77 (115)
T ss_dssp             GGGSEEEEHHHHHHH-CCTTSEE---------E---------EEEEEECCSCCCSCCEEE
T ss_pred             cccCCCccHHHHHHh-ccCCCEE---------E---------EeeEEecccEEcCCEEEE
Confidence            567999999999752 3444433         1         256999999999887663