Citrus Sinensis ID: 028408

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------21
Protein Sequence
MIMAISHSLMSIPTAMHISTLSQFESGVKSKLFVSASPSLRRPKRVSLSVIRAMGSSASSQKPDNIQGIHLLSSAEANRVDYASISDEEWKRRLTGEQYYITRQKGTERAFTGEYWNTKTPGTYHCICCDTPLFESSTKFDSGTGWPSYYQPIGSNMKSKLDLSIIFMPRQEVLCAVCDAHLGHVFDDGPPPTGKRYCINSASLKLKPK
Secondary Structure (PSIPRED)
ccEEcccccccccccEEEEcccEEEccccccccccccccccccHHHHHHHHHHHHcccccccccccccccccccccccccccccccHHHHHHHccHHHHHHHHHccccccccccccccccccEEEEEccccccccccccccccccccccccccccccEEEEEccccccEEEEEEccccccccccccccccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
ccEEEEccccccccEEEEccHHHHHccccccHEEccccccccccEEEcccEccccHHcccccccccccccccccccccccccccccHHHHHHHccHHHHHHHHHcccccccccHHHHccccEEEEEcccccEEEEHHHEEcccccccEEccccccccEEEEEEccccccEEEEEEcccccEEEEEEcccccccccEEEEcHHHEEEEEc
Coil and Loop (DISEMBL)
MIMAISHslmsiptamhiSTLSQFESGVKSKlfvsaspslrrpkrVSLSVIRAMgssassqkpdniqgihllssaeanrvdyasiSDEEWKRRLTGEQYYITRQKgteraftgeywntktpgtyhciccdtplfesstkfdsgtgwpsyyqpigsnmkskldlsiifmprQEVLCAVCDAhlghvfddgppptgkrycinsaslklkpk
Flexible Loop (DISEMBL)
MIMAISHSLMSIPTAMHISTLSQFESGVKSKLfvsaspslrrpkrVSLSVIRAMgssassqkpdniQGIHLlssaeanrvdyasisdeewkrrltgeqyyitrqkgteraftgeywntktpGTYHCICCDTPLFESSTKFDSGTGWPSYYQPIGSNMKSKLDLSIIFMPRQEVLCAVCDAHLGHvfddgppptgkrycinsaslklkpk
Low Complexity Region (SEG)
MIMAISHSLMSIPTAMHISTLSQFESGVKSKLFVSASPSLRRPKRVSLSVIRAMGSSASSQKPDNIQGIHLLSSAEANRVDYASISDEEWKRRLTGEQYYITRQKGTERAFTGEYWNTKTPGTYHCICCDTPLFESSTKFDSGTGWPSYYQPIGSNMKSKLDLSIIFMPRQEVLCAVCDAHLGHVFDDGPPPTGKRYCINSASLKLKPK
Disordered region (IsUnstruct)
*********************************************************************HLL*****NRVDYASISDEEWKRRLTGEQYYITRQKGTERAFTGEYWNTKTPGTYHCICCDTPLFESSTKFDSGTGWPSYYQPIGSNMKSKLDLSIIFMPRQEVLCAVCDAHLGHVFDDG******RYCI**********
Disordered Region (DISOPRED)
*************TAMHISTLSQFESGV**************PKRVSLSVIRAMGSS*****************************DEEWKRRLTGEQYYITRQKGTERAFTGEYWNTKTPGTYHCICCDTPLFESSTKFDSGTGWPSYYQPIGSNMKSKLDLSIIFMPRQEVLCAVCDAHLGHVFDDGPPPTGKRYCINSASLKLKP*
Disordered Region (DISEMBL)
MIMAISHSLMSIPTAMHISTLSQFESGVKSKLFVSASPSLRRPKRVSLSVIRA**********DNIQGIHLLSSAEANRVDYASISDEEWKRRLTGEQYYITRQKGTERAFTGEYWNTKTPGTYHCICCDTPLFESSTKFDSGTGWPSYYQPIGSNMKSKLDLSIIFMPRQEVLCAVCDAHLGHVFDDGPPPTGKRYCINSASLKLKPK
Disordered Region (DISPRO)
MIMAISHSLMSIPTAMHISTLSQFESGVKSKLFVSASPSLRRPKRVSLSVIRAMGSSAS**KPDNIQGIHLL****ANRVDYASISDEEWKRRLTGEQYYITRQKGTERAFTGEYWNTKTPGTYHCICCDTPLFESSTKFDSGTGWPSYYQPIGSNMKSKLDLSIIFMPRQEVLCAVCDAHLGHVFDDGPPPTGKRYCINSASLKLKPK
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
ooooooooooooooooooohhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MIMAISHSLMSIPTAMHISTLSQFESGVKSKLFVSASPSLRRPKRVSLSVIRAMGSSASSQKPDNIQGIHLLSSAEANRVDYASISDEEWKRRLTGEQYYITRQKGTERAFTGEYWNTKTPGTYHCICCDTPLFESSTKFDSGTGWPSYYQPIGSNMKSKLDLSIIFMPRQEVLCAVCDAHLGHVFDDGPPPTGKRYCINSASLKLKPK
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	209	2.2.26 [Sep-21-2011]
Q9C8M2	202	Peptide methionine sulfox	yes	no	0.775	0.801	0.730	9e-69
Q0DC89	214	Peptide methionine sulfox	yes	no	0.593	0.579	0.887	5e-66
Q8DJK9	135	Peptide methionine sulfox	yes	no	0.588	0.911	0.672	3e-46
B0BYW4	131	Peptide methionine sulfox	yes	no	0.588	0.938	0.624	5e-42
C1DRM1	133	Peptide methionine sulfox	yes	no	0.574	0.902	0.608	8e-41
Q2SJP9	139	Peptide methionine sulfox	yes	no	0.602	0.906	0.570	2e-40
Q9I016	132	Peptide methionine sulfox	yes	no	0.583	0.924	0.614	9e-40
Q02NZ0	132	Peptide methionine sulfox	yes	no	0.583	0.924	0.614	9e-40
B7UUZ9	132	Peptide methionine sulfox	yes	no	0.583	0.924	0.614	9e-40
A6V3R3	132	Peptide methionine sulfox	yes	no	0.583	0.924	0.614	1e-39

>sp|Q9C8M2|MSRB1_ARATH Peptide methionine sulfoxide reductase B1, chloroplastic OS=Arabidopsis thaliana GN=MSRB1 PE=1 SV=1

 Score =  259 bits (662), Expect = 9e-69,   Method: Compositional matrix adjust.
 Identities = 125/171 (73%), Positives = 147/171 (85%), Gaps = 9/171 (5%)

Query: 36  ASPSLRRPKRVSLSVIRAMGSSASSQKPDNIQGIHLLSSAEANRVDYASISDEEWKRRLT 95
           A  SL +P+ +SLSV     SS+SS KPDN+Q        EA + ++AS+S+ EWK+RLT
Sbjct: 33  ACRSLSKPRNLSLSVYSMG-SSSSSPKPDNVQ--------EAEKNEFASLSENEWKKRLT 83

Query: 96  GEQYYITRQKGTERAFTGEYWNTKTPGTYHCICCDTPLFESSTKFDSGTGWPSYYQPIGS 155
            EQYYITRQKGTERAFTGEYWN+KTPG Y+C+CCDTPLF+SSTKFDSGTGWPSYYQPIG+
Sbjct: 84  PEQYYITRQKGTERAFTGEYWNSKTPGVYNCVCCDTPLFDSSTKFDSGTGWPSYYQPIGN 143

Query: 156 NMKSKLDLSIIFMPRQEVLCAVCDAHLGHVFDDGPPPTGKRYCINSASLKL 206
           N+K+KLDLSIIFMPRQEV+CAVC+AHLGHVFDDGP PTGKRYC+NSA+LKL
Sbjct: 144 NVKTKLDLSIIFMPRQEVVCAVCNAHLGHVFDDGPRPTGKRYCLNSAALKL 194

Catalyzes the reduction of methionine sulfoxide (MetSO) to methionine in proteins. Specifically reduces the MetSO R-enantiomer. Plays a protective role against oxidative stress by restoring activity to proteins that have been inactivated by methionine oxidation. May play an essential function in association with MSRB2 in maintaining vegetative growth during environmental constraints, through the preservation of photosynthetic antennae. MSRB1 and MSRB2 account for most of the leaf peptide MSR capacity.
Arabidopsis thaliana (taxid: 3702)
EC: 1EC: .EC: 8EC: .EC: 4EC: .EC: 1EC: 2

>sp|Q0DC89|MSRB1_ORYSJ Peptide methionine sulfoxide reductase B1, chloroplastic OS=Oryza sativa subsp. japonica GN=MSRB1 PE=2 SV=2

 Score =  250 bits (638), Expect = 5e-66,   Method: Compositional matrix adjust.
 Identities = 110/124 (88%), Positives = 118/124 (95%)

Query: 84  SISDEEWKRRLTGEQYYITRQKGTERAFTGEYWNTKTPGTYHCICCDTPLFESSTKFDSG 143
           S++DEEW++RLT +QYYITRQKGTERAFTGEYWNTKTPG YHC+CCDTPLFESSTKFDSG
Sbjct: 88  SLTDEEWRKRLTKDQYYITRQKGTERAFTGEYWNTKTPGIYHCVCCDTPLFESSTKFDSG 147

Query: 144 TGWPSYYQPIGSNMKSKLDLSIIFMPRQEVLCAVCDAHLGHVFDDGPPPTGKRYCINSAS 203
           TGWPSYYQPIG N+K KLD+SIIFMPR EVLCAVCDAHLGHVFDDGP PTGKRYCINSAS
Sbjct: 148 TGWPSYYQPIGDNVKCKLDMSIIFMPRTEVLCAVCDAHLGHVFDDGPRPTGKRYCINSAS 207

Query: 204 LKLK 207
           LKLK
Sbjct: 208 LKLK 211

Catalyzes the reduction of methionine sulfoxide (MetSO) to methionine in proteins. Involved in abiotic stress response. Plays a protective role against oxidative stress by restoring activity to proteins that have been inactivated by methionine oxidation. MSRB family specifically reduces the MetSO R-enantiomer.

Oryza sativa subsp. japonica (taxid: 39947)

EC: 1

EC: .

EC: 8

EC: .

EC: 4

EC: .

EC: 1

EC: 2

>sp|Q8DJK9|MSRB_THEEB Peptide methionine sulfoxide reductase MsrB OS=Thermosynechococcus elongatus (strain BP-1) GN=msrB PE=3 SV=1

 Score =  184 bits (468), Expect = 3e-46,   Method: Compositional matrix adjust.
 Identities = 84/125 (67%), Positives = 101/125 (80%), Gaps = 2/125 (1%)

Query: 86  SDEEWKRRLTGEQYYITRQKGTERAFTGEYWNTKTPGTYHCICCDTPLFESSTKFDSGTG 145
           +D EW+ +LT EQYY+TR+KGTERAFTG YWN K PG Y C+CC TPLF S TK+DSGTG
Sbjct: 7   TDAEWQAQLTPEQYYVTRKKGTERAFTGCYWNNKKPGLYSCVCCGTPLFRSETKYDSGTG 66

Query: 146 WPSYYQPIG-SNMKSKLDLSIIFMPRQEVLCAVCDAHLGHVFDDGPPPTGKRYCINSASL 204
           WPS++QP+  +N++ + DLS   M R EVLCAVCDAHLGHVF+DGPPPTG RYCINSA+L
Sbjct: 67  WPSFWQPLDPNNIRMERDLS-HGMVRTEVLCAVCDAHLGHVFEDGPPPTGLRYCINSAAL 125

Query: 205 KLKPK 209
              P+
Sbjct: 126 AFVPE 130

Thermosynechococcus elongatus (strain BP-1) (taxid: 197221)

EC: 1

EC: .

EC: 8

EC: .

EC: 4

EC: .

EC: 1

EC: 2

>sp|B0BYW4|MSRB_ACAM1 Peptide methionine sulfoxide reductase MsrB OS=Acaryochloris marina (strain MBIC 11017) GN=msrB PE=3 SV=1

 Score =  170 bits (431), Expect = 5e-42,   Method: Compositional matrix adjust.
 Identities = 78/125 (62%), Positives = 97/125 (77%), Gaps = 2/125 (1%)

Query: 86  SDEEWKRRLTGEQYYITRQKGTERAFTGEYWNTKTPGTYHCICCDTPLFESSTKFDSGTG 145
           +++EW+ +LT EQ+ +TR  GTERAFTGEY + K  GTY C+CC T LF S TKFDSGTG
Sbjct: 7   TEQEWEAQLTPEQFRVTRHHGTERAFTGEYHDLKAAGTYQCVCCGTELFTSDTKFDSGTG 66

Query: 146 WPSYYQPIG-SNMKSKLDLSIIFMPRQEVLCAVCDAHLGHVFDDGPPPTGKRYCINSASL 204
           WPS++ P   ++++ K D S+ FM R EVLCAVCDAHLGHVF+DGP PTG RYC+NSA+L
Sbjct: 67  WPSFWAPADKTHVEEKTDRSL-FMVRTEVLCAVCDAHLGHVFNDGPKPTGLRYCMNSAAL 125

Query: 205 KLKPK 209
           K  PK
Sbjct: 126 KFVPK 130

Acaryochloris marina (strain MBIC 11017) (taxid: 329726)

EC: 1

EC: .

EC: 8

EC: .

EC: 4

EC: .

EC: 1

EC: 2

>sp|C1DRM1|MSRB_AZOVD Peptide methionine sulfoxide reductase MsrB OS=Azotobacter vinelandii (strain DJ / ATCC BAA-1303) GN=msrB PE=3 SV=1

 Score =  166 bits (421), Expect = 8e-41,   Method: Compositional matrix adjust.
 Identities = 73/120 (60%), Positives = 89/120 (74%)

Query: 90  WKRRLTGEQYYITRQKGTERAFTGEYWNTKTPGTYHCICCDTPLFESSTKFDSGTGWPSY 149
           W+  L+ E++ I R  GTERAF+GEY+ T  PG YHC CCD PLF+S  K+D+G GWPSY
Sbjct: 11  WRELLSDERFRICRLGGTERAFSGEYYATSVPGVYHCACCDAPLFDSDAKYDAGCGWPSY 70

Query: 150 YQPIGSNMKSKLDLSIIFMPRQEVLCAVCDAHLGHVFDDGPPPTGKRYCINSASLKLKPK 209
           +QP+ ++  +  D     M R EVLCA CDAHLGHVF DGPPPTG RYCINSASL+LKP+
Sbjct: 71  FQPVAASALTSRDDYSHGMHRIEVLCARCDAHLGHVFPDGPPPTGLRYCINSASLRLKPR 130

Azotobacter vinelandii (strain DJ / ATCC BAA-1303) (taxid: 322710)

EC: 1

EC: .

EC: 8

EC: .

EC: 4

EC: .

EC: 1

EC: 2

>sp|Q2SJP9|MSRB_HAHCH Peptide methionine sulfoxide reductase MsrB OS=Hahella chejuensis (strain KCTC 2396) GN=msrB PE=3 SV=1

 Score =  165 bits (417), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 73/128 (57%), Positives = 96/128 (75%), Gaps = 2/128 (1%)

Query: 80  VDYASISDEEWKRRLTGEQYYITRQKGTERAFTGEYWNTKTPGTYHCICCDTPLFESSTK 139
           +D    SD+EW+++LT EQY +TR KGTER FTGEY++TK  G Y C+CC  PLF S  K
Sbjct: 1   MDKVKKSDQEWRQQLTDEQYRVTRGKGTERPFTGEYYDTKEAGVYVCVCCGEPLFTSENK 60

Query: 140 FDSGTGWPSYYQPIG-SNMKSKLDLSIIFMPRQEVLCAVCDAHLGHVFDDGPPPTGKRYC 198
           +DSG GWPS++ P+    +  ++D+S + M R E+LC+ CDAHLGHVFDDGP PTG+RYC
Sbjct: 61  YDSGCGWPSFWAPMDKEKITEEIDMSHM-MVRTEILCSKCDAHLGHVFDDGPQPTGQRYC 119

Query: 199 INSASLKL 206
           +NSASL+ 
Sbjct: 120 VNSASLRF 127

Hahella chejuensis (strain KCTC 2396) (taxid: 349521)

EC: 1

EC: .

EC: 8

EC: .

EC: 4

EC: .

EC: 1

EC: 2

>sp|Q9I016|MSRB_PSEAE Peptide methionine sulfoxide reductase MsrB OS=Pseudomonas aeruginosa (strain ATCC 15692 / PAO1 / 1C / PRS 101 / LMG 12228) GN=msrB PE=3 SV=1

 Score =  163 bits (412), Expect = 9e-40,   Method: Compositional matrix adjust.
 Identities = 75/122 (61%), Positives = 88/122 (72%)

Query: 88  EEWKRRLTGEQYYITRQKGTERAFTGEYWNTKTPGTYHCICCDTPLFESSTKFDSGTGWP 147
           + W+  LT EQ++I R  GTERAF+GEY  TKTPG YHC CC T LF+S  K+DSG+GWP
Sbjct: 9   DSWREELTEEQFHICRLGGTERAFSGEYHATKTPGIYHCTCCGTALFDSDAKYDSGSGWP 68

Query: 148 SYYQPIGSNMKSKLDLSIIFMPRQEVLCAVCDAHLGHVFDDGPPPTGKRYCINSASLKLK 207
           SY+QP+ +    +LD     M R EV C  CDAHLGHVF DGP PTG RYCINSASLKL 
Sbjct: 69  SYFQPVDAEAVRELDDFSHGMHRIEVRCGRCDAHLGHVFPDGPRPTGLRYCINSASLKLV 128

Query: 208 PK 209
           P+
Sbjct: 129 PR 130

Pseudomonas aeruginosa (strain ATCC 15692 / PAO1 / 1C / PRS 101 / LMG 12228) (taxid: 208964)

EC: 1

EC: .

EC: 8

EC: .

EC: 4

EC: .

EC: 1

EC: 2

>sp|Q02NZ0|MSRB_PSEAB Peptide methionine sulfoxide reductase MsrB OS=Pseudomonas aeruginosa (strain UCBPP-PA14) GN=msrB PE=3 SV=1

 Score =  163 bits (412), Expect = 9e-40,   Method: Compositional matrix adjust.
 Identities = 75/122 (61%), Positives = 88/122 (72%)

Query: 88  EEWKRRLTGEQYYITRQKGTERAFTGEYWNTKTPGTYHCICCDTPLFESSTKFDSGTGWP 147
           + W+  LT EQ++I R  GTERAF+GEY  TKTPG YHC CC T LF+S  K+DSG+GWP
Sbjct: 9   DSWREELTEEQFHICRLGGTERAFSGEYHATKTPGIYHCTCCGTALFDSDAKYDSGSGWP 68

Query: 148 SYYQPIGSNMKSKLDLSIIFMPRQEVLCAVCDAHLGHVFDDGPPPTGKRYCINSASLKLK 207
           SY+QP+ +    +LD     M R EV C  CDAHLGHVF DGP PTG RYCINSASLKL 
Sbjct: 69  SYFQPVDAEAVRELDDFSHGMHRIEVRCGRCDAHLGHVFPDGPRPTGLRYCINSASLKLV 128

Query: 208 PK 209
           P+
Sbjct: 129 PR 130

Pseudomonas aeruginosa (strain UCBPP-PA14) (taxid: 208963)

EC: 1

EC: .

EC: 8

EC: .

EC: 4

EC: .

EC: 1

EC: 2

>sp|B7UUZ9|MSRB_PSEA8 Peptide methionine sulfoxide reductase MsrB OS=Pseudomonas aeruginosa (strain LESB58) GN=msrB PE=3 SV=1

 Score =  163 bits (412), Expect = 9e-40,   Method: Compositional matrix adjust.
 Identities = 75/122 (61%), Positives = 88/122 (72%)

Query: 88  EEWKRRLTGEQYYITRQKGTERAFTGEYWNTKTPGTYHCICCDTPLFESSTKFDSGTGWP 147
           + W+  LT EQ++I R  GTERAF+GEY  TKTPG YHC CC T LF+S  K+DSG+GWP
Sbjct: 9   DSWREELTEEQFHICRLGGTERAFSGEYHATKTPGIYHCTCCGTALFDSDAKYDSGSGWP 68

Query: 148 SYYQPIGSNMKSKLDLSIIFMPRQEVLCAVCDAHLGHVFDDGPPPTGKRYCINSASLKLK 207
           SY+QP+ +    +LD     M R EV C  CDAHLGHVF DGP PTG RYCINSASLKL 
Sbjct: 69  SYFQPVDAEAVRELDDFSHGMHRIEVRCGRCDAHLGHVFPDGPRPTGLRYCINSASLKLV 128

Query: 208 PK 209
           P+
Sbjct: 129 PR 130

Pseudomonas aeruginosa (strain LESB58) (taxid: 557722)

EC: 1

EC: .

EC: 8

EC: .

EC: 4

EC: .

EC: 1

EC: 2

>sp|A6V3R3|MSRB_PSEA7 Peptide methionine sulfoxide reductase MsrB OS=Pseudomonas aeruginosa (strain PA7) GN=msrB PE=3 SV=1

 Score =  162 bits (411), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 75/122 (61%), Positives = 87/122 (71%)

Query: 88  EEWKRRLTGEQYYITRQKGTERAFTGEYWNTKTPGTYHCICCDTPLFESSTKFDSGTGWP 147
           + W+  LT EQ++I R  GTERAF+GEY  TKTPG YHC CC T LF+S  K+DSG+GWP
Sbjct: 9   DSWREELTEEQFHICRLGGTERAFSGEYHATKTPGVYHCTCCGTALFDSDAKYDSGSGWP 68

Query: 148 SYYQPIGSNMKSKLDLSIIFMPRQEVLCAVCDAHLGHVFDDGPPPTGKRYCINSASLKLK 207
           SY+QP+      +LD     M R EV C  CDAHLGHVF DGP PTG RYCINSASLKL 
Sbjct: 69  SYFQPVDGEAVRELDDFSHGMHRIEVRCGRCDAHLGHVFPDGPRPTGLRYCINSASLKLV 128

Query: 208 PK 209
           P+
Sbjct: 129 PR 130

Pseudomonas aeruginosa (strain PA7) (taxid: 381754)

EC: 1

EC: .

EC: 8

EC: .

EC: 4

EC: .

EC: 1

EC: 2

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	209
225461830	198	PREDICTED: peptide methionine sulfoxide	0.904	0.954	0.776	3e-83
327387767	199	chloroplast methionine sulfoxide reducta	0.909	0.954	0.748	2e-82
156105712	195	chloroplast methionine sulfoxide reducta	0.894	0.958	0.72	5e-78
302142799	149	unnamed protein product [Vitis vinifera]	0.708	0.993	0.872	8e-76
358248144	202	uncharacterized protein LOC100798757 [Gl	0.842	0.871	0.736	1e-71
224114858	147	methionine sulfoxide reductase type [Pop	0.698	0.993	0.815	1e-71
449456547	150	PREDICTED: peptide methionine sulfoxide	0.693	0.966	0.823	2e-71
134252250	148	methionine-R-sulfoxide reductase B4 prot	0.708	1.0	0.833	5e-71
388512453	201	unknown [Lotus japonicus]	0.923	0.960	0.683	2e-70
359493796	142	PREDICTED: peptide methionine sulfoxide	0.674	0.992	0.821	2e-69

>gi|225461830|ref|XP_002285647.1| PREDICTED: peptide methionine sulfoxide reductase B1, chloroplastic-like isoform 1 [Vitis vinifera]

 Score =  313 bits (802), Expect = 3e-83,   Method: Compositional matrix adjust.
 Identities = 156/201 (77%), Positives = 169/201 (84%), Gaps = 12/201 (5%)

Query: 10  MSIPTAMHISTLSQFESGVKSKLFVSASPSLRRPKRVSLSVIRAMGSSASS-QKPDNIQG 68
           +S PT  H+S+ +QF  G K + FVS S +LR+P R   S  R MGSSASS QKPD+IQ 
Sbjct: 9   LSFPT-QHVSSKTQFVFGSKPQ-FVSFSGALRKPVRQKFST-RVMGSSASSSQKPDSIQ- 64

Query: 69  IHLLSSAEANRVDYASISDEEWKRRLTGEQYYITRQKGTERAFTGEYWNTKTPGTYHCIC 128
                  E  +VDY SISDEEWK+RLTGEQ+YITRQKGTERAFTGEYWNTKTPG YHCIC
Sbjct: 65  -------EPGKVDYTSISDEEWKKRLTGEQFYITRQKGTERAFTGEYWNTKTPGAYHCIC 117

Query: 129 CDTPLFESSTKFDSGTGWPSYYQPIGSNMKSKLDLSIIFMPRQEVLCAVCDAHLGHVFDD 188
           CDTPLFESSTKFDSGTGWPSYYQPIG+N+KSKLDLSIIFMPRQEVLCA CDAHLGHVFDD
Sbjct: 118 CDTPLFESSTKFDSGTGWPSYYQPIGNNVKSKLDLSIIFMPRQEVLCAACDAHLGHVFDD 177

Query: 189 GPPPTGKRYCINSASLKLKPK 209
           GPPPTGKRYCINSASLKLKPK
Sbjct: 178 GPPPTGKRYCINSASLKLKPK 198

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|327387767|gb|AEA72443.1| chloroplast methionine sulfoxide reductase B1, partial [Carica papaya]

 Score =  310 bits (794), Expect = 2e-82,   Method: Compositional matrix adjust.
 Identities = 152/203 (74%), Positives = 176/203 (86%), Gaps = 13/203 (6%)

Query: 10  MSIPTAMHIST-LSQFESGVKSKLFV-SASPSLRRPKRVSL-SVIRAMGSSASSQKPDNI 66
           +S+PTA  IS+  S  +SG+KS  FV +  P L+  KR SL S IR+MGSSASSQKPD++
Sbjct: 6   LSVPTATLISSSTSCIDSGIKSSSFVLTRFPPLQ--KRASLFSCIRSMGSSASSQKPDSV 63

Query: 67  QGIHLLSSAEANRVDYASISDEEWKRRLTGEQYYITRQKGTERAFTGEYWNTKTPGTYHC 126
           Q        +A ++DYAS +D+EWK+RLTGEQ+YITRQKGTERAFTGEYWNTKTPGTYHC
Sbjct: 64  Q--------DAGKIDYASWTDDEWKKRLTGEQFYITRQKGTERAFTGEYWNTKTPGTYHC 115

Query: 127 ICCDTPLFESSTKFDSGTGWPSYYQPIGSNMKSKLDLSIIFMPRQEVLCAVCDAHLGHVF 186
           ICCDTPLFESSTKFDSGTGWPSYY+P+G+N+KSKLDLSIIFMPRQEVLC+VCDAHLGHVF
Sbjct: 116 ICCDTPLFESSTKFDSGTGWPSYYEPVGNNVKSKLDLSIIFMPRQEVLCSVCDAHLGHVF 175

Query: 187 DDGPPPTGKRYCINSASLKLKPK 209
           DDGPPPTGKRYCINSA+L+LKPK
Sbjct: 176 DDGPPPTGKRYCINSAALRLKPK 198

Source: Carica papaya

Species: Carica papaya

Genus: Carica

Family: Caricaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|156105712|gb|ABU49227.1| chloroplast methionine sulfoxide reductase B1 precursor [Nicotiana tabacum]

 Score =  296 bits (757), Expect = 5e-78,   Method: Compositional matrix adjust.
 Identities = 144/200 (72%), Positives = 169/200 (84%), Gaps = 13/200 (6%)

Query: 11  SIPTAMHISTLSQFESGVKSKLFVSASPSLRRPK-RVSLSVIRAMGSSASSQKPDNIQGI 69
           S+ +A++ S+ SQ  S   S +   A   L RP+ R+S+S IRAMGSSASSQKPD+ QG 
Sbjct: 8   SLSSAVNFSSKSQITSKPLSCVTFGA---LNRPRSRISVS-IRAMGSSASSQKPDSAQG- 62

Query: 70  HLLSSAEANRVDYASISDEEWKRRLTGEQYYITRQKGTERAFTGEYWNTKTPGTYHCICC 129
                  A++V Y+S+SDEEW+++LT EQ+YITRQKGTERAFTGEYWNTKTPGTYHC+CC
Sbjct: 63  -------ASKVGYSSVSDEEWRKQLTNEQFYITRQKGTERAFTGEYWNTKTPGTYHCVCC 115

Query: 130 DTPLFESSTKFDSGTGWPSYYQPIGSNMKSKLDLSIIFMPRQEVLCAVCDAHLGHVFDDG 189
           DT LFESSTKFDSGTGWPSYYQP+ +N+KSK+DLSIIFMPRQEV+CAVCDAHLGHVFDDG
Sbjct: 116 DTLLFESSTKFDSGTGWPSYYQPVDNNVKSKMDLSIIFMPRQEVVCAVCDAHLGHVFDDG 175

Query: 190 PPPTGKRYCINSASLKLKPK 209
           PPPTGKRYCINSA+LKLKPK
Sbjct: 176 PPPTGKRYCINSAALKLKPK 195

Source: Nicotiana tabacum

Species: Nicotiana tabacum

Genus: Nicotiana

Family: Solanaceae

Order: Solanales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|302142799|emb|CBI20094.3| unnamed protein product [Vitis vinifera]

 Score =  288 bits (738), Expect = 8e-76,   Method: Compositional matrix adjust.
 Identities = 137/157 (87%), Positives = 143/157 (91%), Gaps = 9/157 (5%)

Query: 54  MGSSASS-QKPDNIQGIHLLSSAEANRVDYASISDEEWKRRLTGEQYYITRQKGTERAFT 112
           MGSSASS QKPD+IQ        E  +VDY SISDEEWK+RLTGEQ+YITRQKGTERAFT
Sbjct: 1   MGSSASSSQKPDSIQ--------EPGKVDYTSISDEEWKKRLTGEQFYITRQKGTERAFT 52

Query: 113 GEYWNTKTPGTYHCICCDTPLFESSTKFDSGTGWPSYYQPIGSNMKSKLDLSIIFMPRQE 172
           GEYWNTKTPG YHCICCDTPLFESSTKFDSGTGWPSYYQPIG+N+KSKLDLSIIFMPRQE
Sbjct: 53  GEYWNTKTPGAYHCICCDTPLFESSTKFDSGTGWPSYYQPIGNNVKSKLDLSIIFMPRQE 112

Query: 173 VLCAVCDAHLGHVFDDGPPPTGKRYCINSASLKLKPK 209
           VLCA CDAHLGHVFDDGPPPTGKRYCINSASLKLKPK
Sbjct: 113 VLCAACDAHLGHVFDDGPPPTGKRYCINSASLKLKPK 149

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|358248144|ref|NP_001239824.1| uncharacterized protein LOC100798757 [Glycine max] gi|255640509|gb|ACU20540.1| unknown [Glycine max]

 Score =  275 bits (702), Expect = 1e-71,   Method: Compositional matrix adjust.
 Identities = 137/186 (73%), Positives = 156/186 (83%), Gaps = 10/186 (5%)

Query: 28  VKSKLFVSASPSLRRPKRVSLSVIRAMGSSASSQK----PDNIQGIHLLSSAEANRVDYA 83
           + SK  +  S +  +P+R+S S IRAMGSSASS       D+++     S A A+ +DY 
Sbjct: 22  LDSKFLLWPSCAHIKPRRISTS-IRAMGSSASSHSQSQYADSVE-----SEAGADTIDYK 75

Query: 84  SISDEEWKRRLTGEQYYITRQKGTERAFTGEYWNTKTPGTYHCICCDTPLFESSTKFDSG 143
           S++DEEWK+RLT EQ+YITRQKGTERAFTGEYWNTKTPG YHCICCDTPLFESSTKF+SG
Sbjct: 76  SLTDEEWKKRLTNEQFYITRQKGTERAFTGEYWNTKTPGIYHCICCDTPLFESSTKFNSG 135

Query: 144 TGWPSYYQPIGSNMKSKLDLSIIFMPRQEVLCAVCDAHLGHVFDDGPPPTGKRYCINSAS 203
           TGWPSYYQ IG N+KSKLDLSIIFMPRQEVLCAVCDAHLGHVFDDGPPPTGKR+CINSA+
Sbjct: 136 TGWPSYYQTIGKNVKSKLDLSIIFMPRQEVLCAVCDAHLGHVFDDGPPPTGKRFCINSAA 195

Query: 204 LKLKPK 209
           LKLKPK
Sbjct: 196 LKLKPK 201

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224114858|ref|XP_002316875.1| methionine sulfoxide reductase type [Populus trichocarpa] gi|118486330|gb|ABK95006.1| unknown [Populus trichocarpa] gi|222859940|gb|EEE97487.1| methionine sulfoxide reductase type [Populus trichocarpa]

 Score =  275 bits (702), Expect = 1e-71,   Method: Compositional matrix adjust.
 Identities = 128/157 (81%), Positives = 139/157 (88%), Gaps = 11/157 (7%)

Query: 54  MGSSASS-QKPDNIQGIHLLSSAEANRVDYASISDEEWKRRLTGEQYYITRQKGTERAFT 112
           MGSSASS QKPDN QG           V+YAS+SD EWK++LT E++Y+TRQKGTERAF+
Sbjct: 1   MGSSASSSQKPDNTQG----------DVNYASVSDGEWKKKLTAEEFYVTRQKGTERAFS 50

Query: 113 GEYWNTKTPGTYHCICCDTPLFESSTKFDSGTGWPSYYQPIGSNMKSKLDLSIIFMPRQE 172
           GEYWNTKTPGTYHCICC+TPLFESSTKFD GTGWPSYYQPIG+N+KSKLDLSIIFMPRQE
Sbjct: 51  GEYWNTKTPGTYHCICCNTPLFESSTKFDRGTGWPSYYQPIGNNVKSKLDLSIIFMPRQE 110

Query: 173 VLCAVCDAHLGHVFDDGPPPTGKRYCINSASLKLKPK 209
           VLCA CDAHLGHVFDDGPPPTGKRYCINSASLKL PK
Sbjct: 111 VLCAACDAHLGHVFDDGPPPTGKRYCINSASLKLNPK 147

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449456547|ref|XP_004146010.1| PREDICTED: peptide methionine sulfoxide reductase B1, chloroplastic-like [Cucumis sativus] gi|449532272|ref|XP_004173106.1| PREDICTED: peptide methionine sulfoxide reductase B1, chloroplastic-like [Cucumis sativus]

 Score =  273 bits (699), Expect = 2e-71,   Method: Compositional matrix adjust.
 Identities = 126/153 (82%), Positives = 138/153 (90%), Gaps = 8/153 (5%)

Query: 56  SSASSQKPDNIQGIHLLSSAEANRVDYASISDEEWKRRLTGEQYYITRQKGTERAFTGEY 115
           SS+SSQKPD I+        EA  V+Y S+SD+EWK+RLTGEQ+YITRQKGTERAFTGEY
Sbjct: 4   SSSSSQKPDGIK--------EAGTVNYKSLSDDEWKKRLTGEQFYITRQKGTERAFTGEY 55

Query: 116 WNTKTPGTYHCICCDTPLFESSTKFDSGTGWPSYYQPIGSNMKSKLDLSIIFMPRQEVLC 175
           WNTKT G YHCICCDTPLFESSTKFDSGTGWPSYYQP+G N+KSKLDLSIIFMPR+EVLC
Sbjct: 56  WNTKTAGIYHCICCDTPLFESSTKFDSGTGWPSYYQPVGDNVKSKLDLSIIFMPREEVLC 115

Query: 176 AVCDAHLGHVFDDGPPPTGKRYCINSASLKLKP 208
           AVCDAHLGHVF+DGPPPTGKRYCINSA+LKLKP
Sbjct: 116 AVCDAHLGHVFNDGPPPTGKRYCINSAALKLKP 148

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|134252250|gb|ABO64857.1| methionine-R-sulfoxide reductase B4 protein [Capsicum annuum]

 Score =  273 bits (697), Expect = 5e-71,   Method: Compositional matrix adjust.
 Identities = 130/156 (83%), Positives = 143/156 (91%), Gaps = 8/156 (5%)

Query: 54  MGSSASSQKPDNIQGIHLLSSAEANRVDYASISDEEWKRRLTGEQYYITRQKGTERAFTG 113
           MGSSASS K D+ QG        ++++DY+SISDEEWK++LT EQ+YITRQKGTERAFTG
Sbjct: 1   MGSSASSSKQDSAQG--------SSQIDYSSISDEEWKKQLTNEQFYITRQKGTERAFTG 52

Query: 114 EYWNTKTPGTYHCICCDTPLFESSTKFDSGTGWPSYYQPIGSNMKSKLDLSIIFMPRQEV 173
           EYWNTKTPGTYHCICCDTPLFESSTKFDSGTGWPSYYQPIG+N+KSK+DLSIIFMPRQEV
Sbjct: 53  EYWNTKTPGTYHCICCDTPLFESSTKFDSGTGWPSYYQPIGNNVKSKMDLSIIFMPRQEV 112

Query: 174 LCAVCDAHLGHVFDDGPPPTGKRYCINSASLKLKPK 209
           LCA CDAHLGHVFDDGPPPTGKRYCINSA+LKLKPK
Sbjct: 113 LCAGCDAHLGHVFDDGPPPTGKRYCINSAALKLKPK 148

Source: Capsicum annuum

Species: Capsicum annuum

Genus: Capsicum

Family: Solanaceae

Order: Solanales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388512453|gb|AFK44288.1| unknown [Lotus japonicus]

 Score =  271 bits (692), Expect = 2e-70,   Method: Compositional matrix adjust.
 Identities = 138/202 (68%), Positives = 163/202 (80%), Gaps = 9/202 (4%)

Query: 10  MSIPTAMHISTLSQFESGVKSKLFVSASPSLRRPKRVSLSVIRAMGSSASSQKP--DNIQ 67
           +S+PT MH++++          L   + P+  +  R+S S IRAMGSSASSQ    D I+
Sbjct: 6   LSLPT-MHVASIKLIPKLDSKVLLCPSPPAYTKLTRIS-SSIRAMGSSASSQSNQADKIE 63

Query: 68  GIHLLSSAEANRVDYASISDEEWKRRLTGEQYYITRQKGTERAFTGEYWNTKTPGTYHCI 127
                + + A  VDY S+S++EWK+RLT EQ+Y+TRQKGTERAFTGEYWNTKTPGTY+CI
Sbjct: 64  -----TQSGAGSVDYKSLSNDEWKKRLTNEQFYVTRQKGTERAFTGEYWNTKTPGTYNCI 118

Query: 128 CCDTPLFESSTKFDSGTGWPSYYQPIGSNMKSKLDLSIIFMPRQEVLCAVCDAHLGHVFD 187
           CCDTPLFESS+KF+SGTGWPSY QPIG+N+KSKLDLS+IFMPRQEVLCAVCDAHLGHVFD
Sbjct: 119 CCDTPLFESSSKFNSGTGWPSYDQPIGNNVKSKLDLSVIFMPRQEVLCAVCDAHLGHVFD 178

Query: 188 DGPPPTGKRYCINSASLKLKPK 209
           DGPPPTGKRYCINSASLKLK K
Sbjct: 179 DGPPPTGKRYCINSASLKLKTK 200

Source: Lotus japonicus

Species: Lotus japonicus

Genus: Lotus

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359493796|ref|XP_003634669.1| PREDICTED: peptide methionine sulfoxide reductase B1, chloroplastic-like isoform 2 [Vitis vinifera]

 Score =  267 bits (682), Expect = 2e-69,   Method: Compositional matrix adjust.
 Identities = 129/157 (82%), Positives = 136/157 (86%), Gaps = 16/157 (10%)

Query: 54  MGSSASS-QKPDNIQGIHLLSSAEANRVDYASISDEEWKRRLTGEQYYITRQKGTERAFT 112
           MGSSASS QKPD+IQ        E  +VDY SISDEEWK+RLTGEQ+YITRQKGTERAFT
Sbjct: 1   MGSSASSSQKPDSIQ--------EPGKVDYTSISDEEWKKRLTGEQFYITRQKGTERAFT 52

Query: 113 GEYWNTKTPGTYHCICCDTPLFESSTKFDSGTGWPSYYQPIGSNMKSKLDLSIIFMPRQE 172
           GEYWNTKTPG YHCICCDTPLF+       GTGWPSYYQPIG+N+KSKLDLSIIFMPRQE
Sbjct: 53  GEYWNTKTPGAYHCICCDTPLFD-------GTGWPSYYQPIGNNVKSKLDLSIIFMPRQE 105

Query: 173 VLCAVCDAHLGHVFDDGPPPTGKRYCINSASLKLKPK 209
           VLCA CDAHLGHVFDDGPPPTGKRYCINSASLKLKPK
Sbjct: 106 VLCAACDAHLGHVFDDGPPPTGKRYCINSASLKLKPK 142

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	209
TAIR|locus:2024817	202	MSRB1 "methionine sulfoxide re	0.928	0.960	0.656	1.7e-68
UNIPROTKB|Q0DC89	214	MSRB1 "Peptide methionine sulf	0.736	0.719	0.754	4.7e-64
UNIPROTKB|Q74B11	137	msrB "Peptide methionine sulfo	0.574	0.875	0.614	2.6e-38
TIGR_CMR|GSU_2451	137	GSU_2451 "PilB-related protein	0.574	0.875	0.614	2.6e-38
UNIPROTKB|Q885Q1	131	msrB "Peptide methionine sulfo	0.578	0.923	0.617	1.1e-37
MGI|MGI:1923717	175	Msrb2 "methionine sulfoxide re	0.593	0.708	0.533	4.9e-37
ZFIN|ZDB-GENE-040426-2304	184	msrb2 "methionine sulfoxide re	0.784	0.891	0.433	9.2e-36
RGD|1306026	174	Msrb2 "methionine sulfoxide re	0.593	0.712	0.518	1.5e-35
UNIPROTKB|E1BMD3	191	MSRB3 "Uncharacterized protein	0.588	0.643	0.569	1.9e-35
UNIPROTKB|E1C1X3	184	MSRB3 "Uncharacterized protein	0.717	0.815	0.490	2.4e-35

TAIR|locus:2024817 MSRB1 "methionine sulfoxide reductase B 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 695 (249.7 bits), Expect = 1.7e-68, P = 1.7e-68
 Identities = 134/204 (65%), Positives = 163/204 (79%)

Query:     3 MAISHSLMSIPTAMHISTLSQFESGVKSKLFVSASPSLRRPKRVSLSVIRAMGSSASSQK 62
             MA S  L  I ++  +S  ++     K+     A  SL +P+ +SLSV  +MGSS+SS K
Sbjct:     1 MASSTRLTIIQSSF-VSARTRLNYVSKTNHSGFACRSLSKPRNLSLSVY-SMGSSSSSPK 58

Query:    63 PDNIQGIHLLSSAEANRVDYASISDEEWKRRLTGEQYYITRQKGTERAFTGEYWNTKTPG 122
             PDN+Q        EA + ++AS+S+ EWK+RLT EQYYITRQKGTERAFTGEYWN+KTPG
Sbjct:    59 PDNVQ--------EAEKNEFASLSENEWKKRLTPEQYYITRQKGTERAFTGEYWNSKTPG 110

Query:   123 TYHCICCDTPLFESSTKFDSGTGWPSYYQPIGSNMKSKLDLSIIFMPRQEVLCAVCDAHL 182
              Y+C+CCDTPLF+SSTKFDSGTGWPSYYQPIG+N+K+KLDLSIIFMPRQEV+CAVC+AHL
Sbjct:   111 VYNCVCCDTPLFDSSTKFDSGTGWPSYYQPIGNNVKTKLDLSIIFMPRQEVVCAVCNAHL 170

Query:   183 GHVFDDGPPPTGKRYCINSASLKL 206
             GHVFDDGP PTGKRYC+NSA+LKL
Sbjct:   171 GHVFDDGPRPTGKRYCLNSAALKL 194

GO:0008113 "peptide-methionine (S)-S-oxide reductase activity" evidence=IEA

GO:0009507 "chloroplast" evidence=ISM;IDA;TAS

GO:0055114 "oxidation-reduction process" evidence=IEA

GO:0006979 "response to oxidative stress" evidence=IEP

GO:0033743 "peptide-methionine (R)-S-oxide reductase activity" evidence=IDA

GO:0009570 "chloroplast stroma" evidence=IDA

UNIPROTKB|Q0DC89 MSRB1 "Peptide methionine sulfoxide reductase B1, chloroplastic" [Oryza sativa Japonica Group (taxid:39947)]

 Score = 653 (234.9 bits), Expect = 4.7e-64, P = 4.7e-64
 Identities = 123/163 (75%), Positives = 139/163 (85%)

Query:    51 IRAMG----SSASSQKPDNIQGIHLLSSAEAN-RVDYA-SISDEEWKRRLTGEQYYITRQ 104
             +RAMG    SS+SS    + QG    + A+A  + +Y+ S++DEEW++RLT +QYYITRQ
Sbjct:    52 VRAMGAASSSSSSSSSSPSPQG---QAQAQAQGKPNYSTSLTDEEWRKRLTKDQYYITRQ 108

Query:   105 KGTERAFTGEYWNTKTPGTYHCICCDTPLFESSTKFDSGTGWPSYYQPIGSNMKSKLDLS 164
             KGTERAFTGEYWNTKTPG YHC+CCDTPLFESSTKFDSGTGWPSYYQPIG N+K KLD+S
Sbjct:   109 KGTERAFTGEYWNTKTPGIYHCVCCDTPLFESSTKFDSGTGWPSYYQPIGDNVKCKLDMS 168

Query:   165 IIFMPRQEVLCAVCDAHLGHVFDDGPPPTGKRYCINSASLKLK 207
             IIFMPR EVLCAVCDAHLGHVFDDGP PTGKRYCINSASLKLK
Sbjct:   169 IIFMPRTEVLCAVCDAHLGHVFDDGPRPTGKRYCINSASLKLK 211

GO:0006979 "response to oxidative stress" evidence=IDA

GO:0009507 "chloroplast" evidence=IDA

GO:0033743 "peptide-methionine (R)-S-oxide reductase activity" evidence=IDA

UNIPROTKB|Q74B11 msrB "Peptide methionine sulfoxide reductase MsrB" [Geobacter sulfurreducens PCA (taxid:243231)]

 Score = 410 (149.4 bits), Expect = 2.6e-38, P = 2.6e-38
 Identities = 75/122 (61%), Positives = 91/122 (74%)

Query:    86 SDEEWKRRLTGEQYYITRQKGTERAFTGEYWNTKTPGTYHCICCDTPLFESSTKFDSGTG 145
             +D +W+ +LT EQY ITR+KGTE AFTG YW+    GTY C+CC  PLF+S+ KFDSGTG
Sbjct:     8 TDAQWRGQLTPEQYEITRRKGTEPAFTGAYWDCHDRGTYRCVCCGAPLFDSADKFDSGTG 67

Query:   146 WPSYYQPI-GSNMKSKLDLSIIFMPRQEVLCAVCDAHLGHVFDDGPPPTGKRYCINSASL 204
             WPS+  P+ G  ++S+ D S  FM R EV CA C AHLGH+F DGP PTG+RYCINSASL
Sbjct:    68 WPSFTAPLDGDGVESEEDRSF-FMHRTEVHCASCGAHLGHLFPDGPAPTGRRYCINSASL 126

Query:   205 KL 206
              L
Sbjct:   127 VL 128

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

TIGR_CMR|GSU_2451 GSU_2451 "PilB-related protein" [Geobacter sulfurreducens PCA (taxid:243231)]

 Score = 410 (149.4 bits), Expect = 2.6e-38, P = 2.6e-38
 Identities = 75/122 (61%), Positives = 91/122 (74%)

Query:    86 SDEEWKRRLTGEQYYITRQKGTERAFTGEYWNTKTPGTYHCICCDTPLFESSTKFDSGTG 145
             +D +W+ +LT EQY ITR+KGTE AFTG YW+    GTY C+CC  PLF+S+ KFDSGTG
Sbjct:     8 TDAQWRGQLTPEQYEITRRKGTEPAFTGAYWDCHDRGTYRCVCCGAPLFDSADKFDSGTG 67

Query:   146 WPSYYQPI-GSNMKSKLDLSIIFMPRQEVLCAVCDAHLGHVFDDGPPPTGKRYCINSASL 204
             WPS+  P+ G  ++S+ D S  FM R EV CA C AHLGH+F DGP PTG+RYCINSASL
Sbjct:    68 WPSFTAPLDGDGVESEEDRSF-FMHRTEVHCASCGAHLGHLFPDGPAPTGRRYCINSASL 126

Query:   205 KL 206
              L
Sbjct:   127 VL 128

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

UNIPROTKB|Q885Q1 msrB "Peptide methionine sulfoxide reductase MsrB" [Pseudomonas syringae pv. tomato str. DC3000 (taxid:223283)]

 Score = 404 (147.3 bits), Expect = 1.1e-37, P = 1.1e-37
 Identities = 76/123 (61%), Positives = 90/123 (73%)

Query:    88 EEWKRRLTGEQYYITRQKGTERAFTGEYWNTKTPGTYHCICCDTPLFESSTKFDSGTGWP 147
             EEWK  L   QY + R KGTER F+G+Y +TKT G YHCICC+  LF+S+TKFDSG GWP
Sbjct:     9 EEWKEMLDPAQYSVCRLKGTERPFSGKYNDTKTAGVYHCICCNEALFDSTTKFDSGCGWP 68

Query:   148 SYYQPI-GSNMKSKLDLSIIFMPRQEVLCAVCDAHLGHVFDDGPPPTGKRYCINSASLKL 206
             S+Y P+ GS +    D+S   M R EV+CA CDAHLGHVF DGPPPTG RYCINS  L+L
Sbjct:    69 SFYAPLEGSAVVEVRDVSH-GMIRTEVVCARCDAHLGHVFPDGPPPTGLRYCINSVCLEL 127

Query:   207 KPK 209
              P+
Sbjct:   128 VPR 130

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

MGI|MGI:1923717 Msrb2 "methionine sulfoxide reductase B2" [Mus musculus (taxid:10090)]

 Score = 398 (145.2 bits), Expect = 4.9e-37, P = 4.9e-37
 Identities = 71/133 (53%), Positives = 94/133 (70%)

Query:    84 SISDEEWKRRLTGEQYYITRQKGTERAFTGEYWNTKTPGTYHCICCDTPLFESSTKFDSG 143
             S+S+ +W+++LT EQ+Y+TR+KGTE  F+G Y N K  G YHC+CCD+PLF S  K+ SG
Sbjct:    41 SLSEADWQKKLTPEQFYVTREKGTEAPFSGMYLNNKETGMYHCVCCDSPLFSSEKKYCSG 100

Query:   144 TGWPSYYQPIGSN--------MKSKLDLSIIFMPRQEVLCAVCDAHLGHVFDDGPPPTGK 195
             TGWPS+ +  GS         +  +LD S+   PR EV+C  C+AHLGHVF DGP PTG+
Sbjct:   101 TGWPSFSEAYGSKGSDESHTGILRRLDTSL-GCPRMEVVCKQCEAHLGHVFPDGPKPTGQ 159

Query:   196 RYCINSASLKLKP 208
             R+CINS +LK KP
Sbjct:   160 RFCINSVALKFKP 172

GO:0005739 "mitochondrion" evidence=IDA

GO:0008270 "zinc ion binding" evidence=IDA

GO:0016491 "oxidoreductase activity" evidence=IEA

GO:0030091 "protein repair" evidence=IDA

GO:0033743 "peptide-methionine (R)-S-oxide reductase activity" evidence=IDA

GO:0046872 "metal ion binding" evidence=IEA

GO:0055114 "oxidation-reduction process" evidence=IDA

ZFIN|ZDB-GENE-040426-2304 msrb2 "methionine sulfoxide reductase B2" [Danio rerio (taxid:7955)]

 Score = 386 (140.9 bits), Expect = 9.2e-36, P = 9.2e-36
 Identities = 75/173 (43%), Positives = 105/173 (60%)

Query:    46 VSLSVIRAMGSSASSQKPDN--IQGIHLLSSAEANRVDYASISDEEWKRRLTGEQYYITR 103
             V LS + + G++  S  P      GI L+SS+   +         +W+R+L+ EQY +TR
Sbjct:    10 VRLSTVVSKGATGKSVLPQKRIFAGIRLISSSTGLQSLTRYDQSTDWQRKLSPEQYVVTR 69

Query:   104 QKGTERAFTGEYWNTKTPGTYHCICCDTPLFESSTKFDSGTGWPSYYQPIGSNMKSKLDL 163
             +KGTE  F+G Y N    G YHC+CCD+PLF S  K+D+G GWPS+ +  G+  K +   
Sbjct:    70 EKGTEVPFSGIYLNHNEVGMYHCVCCDSPLFSSEAKYDAGAGWPSFCEAHGTWEKDESHA 129

Query:   164 SIIFMPRQ-------EVLCAVCDAHLGHVFDDGPPPTGKRYCINSASLKLKPK 209
             +I+  P         EV+C  CDAHLGHVF+DGP PTG+R+CINS +L  KP+
Sbjct:   130 NIVRRPDNSLGSTGTEVICKHCDAHLGHVFEDGPDPTGQRFCINSVALNFKPR 182

GO:0055114 "oxidation-reduction process" evidence=IEA

GO:0033743 "peptide-methionine (R)-S-oxide reductase activity" evidence=IEA

GO:0046872 "metal ion binding" evidence=IEA

GO:0016491 "oxidoreductase activity" evidence=IEA

GO:0005739 "mitochondrion" evidence=IEA

RGD|1306026 Msrb2 "methionine sulfoxide reductase B2" [Rattus norvegicus (taxid:10116)]

 Score = 384 (140.2 bits), Expect = 1.5e-35, P = 1.5e-35
 Identities = 69/133 (51%), Positives = 92/133 (69%)

Query:    84 SISDEEWKRRLTGEQYYITRQKGTERAFTGEYWNTKTPGTYHCICCDTPLFESSTKFDSG 143
             S+S  +W+++LT EQ+Y+TR+KGTE  F+G Y   K  G YHC+CCD+PLF S  K+ SG
Sbjct:    40 SLSKADWQKKLTPEQFYVTREKGTEAPFSGMYLKNKETGMYHCVCCDSPLFSSEKKYCSG 99

Query:   144 TGWPSYYQPIGSN--------MKSKLDLSIIFMPRQEVLCAVCDAHLGHVFDDGPPPTGK 195
             TGWPS+ +  G+         +  +LD S+   PR EV+C  C+AHLGHVF DGP PTG+
Sbjct:   100 TGWPSFSEAHGTKGSDESHTGILRRLDTSL-GCPRMEVVCKQCEAHLGHVFPDGPDPTGQ 158

Query:   196 RYCINSASLKLKP 208
             R+CINS +LK KP
Sbjct:   159 RFCINSVALKFKP 171

GO:0005739 "mitochondrion" evidence=IEA;ISO

GO:0008270 "zinc ion binding" evidence=IEA;ISO

GO:0030091 "protein repair" evidence=IEA;ISO

GO:0033743 "peptide-methionine (R)-S-oxide reductase activity" evidence=IEA;ISO

GO:0055114 "oxidation-reduction process" evidence=ISO

UNIPROTKB|E1BMD3 MSRB3 "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 383 (139.9 bits), Expect = 1.9e-35, P = 1.9e-35
 Identities = 70/123 (56%), Positives = 87/123 (70%)

Query:    86 SDEEWKRRLTGEQYYITRQKGTERAFTGEYWNTKTPGTYHCICCDTPLFESSTKFDSGTG 145
             S +E ++RLT  QY++T++KGTE AF GEY + K PG Y C+ C TPLF+S TKFDSG+G
Sbjct:    46 SQQELRKRLTPLQYHVTQEKGTESAFEGEYTHHKDPGIYKCVVCGTPLFKSETKFDSGSG 105

Query:   146 WPSYYQPIGSNMKSKLDLSIIFMPRQEVLCAVCDAHLGHVFDDGPPPTGKRYCINSASLK 205
             WPS++  I S+  +  D     M R E  C+ C AHLGH+FDDGP PTGKRYCINSASL 
Sbjct:   106 WPSFHDVINSDAITFTDDFSYGMHRVETSCSQCGAHLGHIFDDGPRPTGKRYCINSASLS 165

Query:   206 LKP 208
               P
Sbjct:   166 FSP 168

GO:0033743 "peptide-methionine (R)-S-oxide reductase activity" evidence=IEA

GO:0030091 "protein repair" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

GO:0005783 "endoplasmic reticulum" evidence=IEA

GO:0005739 "mitochondrion" evidence=IEA

UNIPROTKB|E1C1X3 MSRB3 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 382 (139.5 bits), Expect = 2.4e-35, P = 2.4e-35
 Identities = 74/151 (49%), Positives = 98/151 (64%)

Query:    59 SSQKPDNIQGIHLLSSAEANRVDYASI-SDEEWKRRLTGEQYYITRQKGTERAFTGEYWN 117
             +  +P  ++   L S +  ++ D   + S EE ++RLT  QY++T++KGTE AF GEY +
Sbjct:    11 TKSQPVALRACGLPSGSCRDKKDCKVVFSQEELRKRLTPLQYHVTQEKGTESAFEGEYTH 70

Query:   118 TKTPGTYHCICCDTPLFESSTKFDSGTGWPSYYQPIGSNMKSKLDLSIIFMPRQEVLCAV 177
              K  G Y C+ C TPLF+S TKFDS +GWPS+Y  I  +  +  D     M R E+ C+ 
Sbjct:    71 HKAQGIYKCVVCGTPLFKSETKFDSNSGWPSFYDVISPDTITLTDDFSYGMHRIEISCSQ 130

Query:   178 CDAHLGHVFDDGPPPTGKRYCINSASLKLKP 208
             C AHLGH+FDDGP PTGKRYCINSASL  KP
Sbjct:   131 CGAHLGHIFDDGPRPTGKRYCINSASLSFKP 161

GO:0005739 "mitochondrion" evidence=IEA

GO:0005783 "endoplasmic reticulum" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

GO:0030091 "protein repair" evidence=IEA

GO:0033743 "peptide-methionine (R)-S-oxide reductase activity" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q2SJP9	MSRB_HAHCH	1, ., 8, ., 4, ., 1, 2	0.5703	0.6028	0.9064	yes	no
O26807	MSRB_METTH	1, ., 8, ., 4, ., 1, 2	0.5422	0.6555	0.9072	yes	no
Q92RA4	MSRB1_RHIME	1, ., 8, ., 4, ., 1, 2	0.5076	0.6220	0.9629	yes	no
Q0DC89	MSRB1_ORYSJ	1, ., 8, ., 4, ., 1, 2	0.8870	0.5933	0.5794	yes	no
A4XVB1	MSRB_PSEMY	1, ., 8, ., 4, ., 1, 2	0.5692	0.6220	0.9923	yes	no
A5GQT3	MSRB_SYNR3	1, ., 8, ., 4, ., 1, 2	0.5348	0.6172	0.9485	yes	no
Q9C8M2	MSRB1_ARATH	1, ., 8, ., 4, ., 1, 2	0.7309	0.7751	0.8019	yes	no
Q21LK2	MSRB_SACD2	1, ., 8, ., 4, ., 1, 2	0.5590	0.6076	0.9477	yes	no
Q8UGX7	MSRB_AGRT5	1, ., 8, ., 4, ., 1, 2	0.5109	0.6267	0.9703	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
3rd Layer	1.8.4	0.691
4th Layer	1.8.4.12	0.991

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	PtrMsrB2	SubName- Full=Putative uncharacterized protein; (147 aa)
		(Populus trichocarpa)
Predicted Functional Partners:
	PtrcMsrA2	methionine sulfoxide reductase type (179 aa)	•	•	•				•		0.556
	PtrcMsrA1	methionine sulfoxide reductase type (179 aa)	•	•	•				•		0.554
	PtrcMsrA4	SubName- Full=Putative uncharacterized protein; (203 aa)	•	•	•				•		0.524
	PtrcMsrA3	methionine sulfoxide reductase type (204 aa)	•	•	•				•		0.523

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	209
PRK00222	142	PRK00222, PRK00222, methionine sulfoxide reductase	1e-81
COG0229	140	COG0229, COG0229, Conserved domain frequently asso	1e-74
pfam01641	124	pfam01641, SelR, SelR domain	3e-67
TIGR00357	134	TIGR00357, TIGR00357, methionine-R-sulfoxide reduc	9e-66
PRK05550	283	PRK05550, PRK05550, bifunctional methionine sulfox	7e-52
PRK14018	521	PRK14018, PRK14018, trifunctional thioredoxin/meth	5e-37
PRK05508	119	PRK05508, PRK05508, methionine sulfoxide reductase	1e-35

>gnl|CDD|234692 PRK00222, PRK00222, methionine sulfoxide reductase B; Provisional

 Score =  238 bits (610), Expect = 1e-81
 Identities = 76/125 (60%), Positives = 87/125 (69%), Gaps = 2/125 (1%)

Query: 86  SDEEWKRRLTGEQYYITRQKGTERAFTGEYWNTKTPGTYHCICCDTPLFESSTKFDSGTG 145
           S EEWK++LT EQY +T++ GTER FTGEY + K  G Y CI C  PLF S TKFDSG G
Sbjct: 6   SKEEWKKQLTPEQYRVTQEHGTERPFTGEYLDNKEKGIYVCIVCGEPLFSSDTKFDSGCG 65

Query: 146 WPSYYQPI-GSNMKSKLDLSIIFMPRQEVLCAVCDAHLGHVFDDGPPPTGKRYCINSASL 204
           WPS+ +PI    ++   D S   M R EV CA CD+HLGHVF DGP PTG RYCINSASL
Sbjct: 66  WPSFTKPIDEEAIRELRDTS-HGMVRTEVRCANCDSHLGHVFPDGPKPTGLRYCINSASL 124

Query: 205 KLKPK 209
           K  PK
Sbjct: 125 KFIPK 129

Length = 142

>gnl|CDD|223307 COG0229, COG0229, Conserved domain frequently associated with peptide methionine sulfoxide reductase [Posttranslational modification, protein turnover, chaperones]

 Score =  221 bits (565), Expect = 1e-74
 Identities = 76/126 (60%), Positives = 85/126 (67%), Gaps = 3/126 (2%)

Query: 86  SDEEWKRRLTGEQYYITRQKGTERAFTGEYWNTKTPGTYHCICCDTPLFESSTKFDSGTG 145
           SDEE K +LT EQY +T+  GTER FTGEY + K  G Y CI C  PLF S  KFDSG G
Sbjct: 5   SDEELKEKLTPEQYRVTQNHGTERPFTGEYLDNKEKGIYVCIVCGEPLFSSEDKFDSGCG 64

Query: 146 WPSYYQPI-GSNMKSKLDLSIIFMPRQEVLCAVCDAHLGHVFDDGPPPTG-KRYCINSAS 203
           WPS+ +PI    +  K D S   M R EV CA CD+HLGHVF DGPPPTG  RYCINSAS
Sbjct: 65  WPSFTKPISPDAITYKEDRS-HGMVRTEVRCANCDSHLGHVFPDGPPPTGGLRYCINSAS 123

Query: 204 LKLKPK 209
           L+  PK
Sbjct: 124 LRFIPK 129

Length = 140

>gnl|CDD|201899 pfam01641, SelR, SelR domain

 Score =  202 bits (515), Expect = 3e-67
 Identities = 74/125 (59%), Positives = 83/125 (66%), Gaps = 3/125 (2%)

Query: 87  DEEWKRRLTGEQYYITRQKGTERAFTGEYWNTKTPGTYHCICCDTPLFESSTKFDSGTGW 146
           DEEWK  L+ EQY + R KGTE+ FTGEY +    G Y CI C  PLF S+TKFDSG GW
Sbjct: 1   DEEWKAVLSPEQYRVLRNKGTEKPFTGEYDDHFEEGIYVCIGCGEPLFSSTTKFDSGCGW 60

Query: 147 PSYYQPI-GSNMKSKLDLSIIFMPRQEVLCAVCDAHLGHVFDDGPP-PTGKRYCINSASL 204
           PS+++PI G  +K   D S   M R EV CA CD HLGHVF DGP  P G RYCINSASL
Sbjct: 61  PSFFEPISGDAIKYTPDRS-HGMRRTEVRCANCDGHLGHVFKDGPKEPGGLRYCINSASL 119

Query: 205 KLKPK 209
           K  P 
Sbjct: 120 KFIPA 124

Methionine sulfoxide reduction is an important process, by which cells regulate biological processes and cope with oxidative stress. MsrA, a protein involved in the reduction of methionine sulfoxides in proteins, has been known for four decades and has been extensively characterized with respect to structure and function. However, recent studies revealed that MsrA is only specific for methionine-S-sulfoxides. Because oxidized methionines occur in a mixture of R and S isomers in vivo, it was unclear how stereo-specific MsrA could be responsible for the reduction of all protein methionine sulfoxides. It appears that a second methionine sulfoxide reductase, SelR, evolved that is specific for methionine-R-sulfoxides, the activity that is different but complementary to that of MsrA. Thus, these proteins, working together, could reduce both stereoisomers of methionine sulfoxide. This domain is found both in SelR proteins and fused with the peptide methionine sulfoxide reductase enzymatic domain pfam01625. The domain has two conserved cysteine and histidines. The domain binds both selenium and zinc. The final cysteine is found to be replaced by the rare amino acid selenocysteine in some members of the family. This family has methionine-R-sulfoxide reductase activity. Length = 124

>gnl|CDD|129454 TIGR00357, TIGR00357, methionine-R-sulfoxide reductase

 Score =  198 bits (505), Expect = 9e-66
 Identities = 72/125 (57%), Positives = 82/125 (65%), Gaps = 2/125 (1%)

Query: 86  SDEEWKRRLTGEQYYITRQKGTERAFTGEYWNTKTPGTYHCICCDTPLFESSTKFDSGTG 145
           SDEE K++LT  QY +T+  GTE  FT EYW+ K  G Y  I C  PLF S  KFDSG G
Sbjct: 3   SDEELKKKLTPLQYEVTQNAGTEPPFTNEYWDNKEEGIYVDITCGEPLFSSEDKFDSGCG 62

Query: 146 WPSYYQPIGSN-MKSKLDLSIIFMPRQEVLCAVCDAHLGHVFDDGPPPTGKRYCINSASL 204
           WPS+Y+PI    +  + D S   M R EV C  CDAHLGHVFDDGP PTG RYCINSA+L
Sbjct: 63  WPSFYKPISEEVVAYERDES-HGMIRTEVRCRNCDAHLGHVFDDGPEPTGLRYCINSAAL 121

Query: 205 KLKPK 209
           K  P 
Sbjct: 122 KFIPL 126

This model describes a domain found in PilB, a protein important for pilin expression, N-terminal to a domain coextensive to with the known peptide methionine sulfoxide reductase (MsrA), a protein repair enzyme, of E. coli. Among the early completed genomes, this module is found if and only if MsrA is also found, whether N-terminal to MsrA (as for Helicobacter pylori), C-terminal (as for Treponema pallidum), or in a separate polypeptide. Although the function of this region is not clear, an auxiliary function to MsrA is suggested [Protein fate, Protein modification and repair, Cellular processes, Adaptations to atypical conditions]. Length = 134

>gnl|CDD|235499 PRK05550, PRK05550, bifunctional methionine sulfoxide reductase B/A protein; Provisional

 Score =  168 bits (427), Expect = 7e-52
 Identities = 52/119 (43%), Positives = 66/119 (55%), Gaps = 4/119 (3%)

Query: 91  KRRLTGEQYYITRQKGTERAFTGEYWNTKTPGTYHCICCDTPLFESSTKFDSGTGWPSYY 150
            + LT  +Y +   KGTER F+GEY++    G Y C  C  PLF S  KF+SG GWPS+ 
Sbjct: 4   MKSLTPFEYRVIEDKGTERPFSGEYYDHDEKGVYLCRRCGAPLFRSEDKFNSGCGWPSFD 63

Query: 151 QPIGSNMKSKLDLSIIFMPRQEVLCAVCDAHLGHVFDDGPP-PTGKRYCINSASLKLKP 208
             I   +K   D       R E++CA C AHLGHVF+     P   R+C+NSASL   P
Sbjct: 64  DEIPGAVKRLPDADGR---RTEIVCANCGAHLGHVFEGEGLTPKNTRHCVNSASLDFVP 119

Length = 283

>gnl|CDD|184456 PRK14018, PRK14018, trifunctional thioredoxin/methionine sulfoxide reductase A/B protein; Provisional

 Score =  134 bits (339), Expect = 5e-37
 Identities = 63/129 (48%), Positives = 76/129 (58%), Gaps = 1/129 (0%)

Query: 82  YASISDEEWKRRLTGEQYYITRQKGTERAFTGEYWNTKTPGTYHCICCDTPLFESSTKFD 141
           Y   SD E KR LT EQY IT+   TERAF+ EY +   PG Y  +    PLF S+ K+D
Sbjct: 377 YKKPSDAELKRTLTEEQYQITQNAATERAFSHEYDHLFKPGIYVDVVSGEPLFSSADKYD 436

Query: 142 SGTGWPSYYQPIGSNMKSKLDLSIIFMPRQEVLCAVCDAHLGHVFDDGPPP-TGKRYCIN 200
           SG GWPS+ +PI + + ++ D     M R EV     D+HLGHVF DGP    G RYCIN
Sbjct: 437 SGCGWPSFTRPIDAKVVTEHDDFSYNMRRTEVRSRAADSHLGHVFPDGPRDKGGLRYCIN 496

Query: 201 SASLKLKPK 209
            ASLK  P 
Sbjct: 497 GASLKFIPL 505

Length = 521

>gnl|CDD|180121 PRK05508, PRK05508, methionine sulfoxide reductase B; Provisional

 Score =  121 bits (305), Expect = 1e-35
 Identities = 51/120 (42%), Positives = 65/120 (54%), Gaps = 4/120 (3%)

Query: 91  KRRLTGEQYYITRQKGTERAFTGEYWNTKTPGTYHCICCDTPLFESSTKFDSGTGWPSYY 150
              LT E+  +  +KGTE  F+GEY +    GTY C  C  PL+ S  KF SG GWPS+ 
Sbjct: 1   YNELTPEEEAVILRKGTEPPFSGEYNDFFEKGTYVCKQCGAPLYRSEDKFKSGCGWPSFD 60

Query: 151 QPIGSNMKSKLDLSIIFMPRQEVLCAVCDAHLGHVFD-DGPPPTGKRYCINSASLKLKPK 209
             I   +K   D       R E++CA C  HLGHVF+ +G  P   R+C+NS SLK  P 
Sbjct: 61  DEIKGAVKRIPDADGR---RTEIVCANCGGHLGHVFEGEGFTPKNTRHCVNSISLKFVPD 117

Length = 119

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	209
COG0229	140	Conserved domain frequently associated with peptid	100.0
TIGR00357	134	methionine-R-sulfoxide reductase. This model descr	100.0
PRK00222	142	methionine sulfoxide reductase B; Provisional	100.0
PF01641	124	SelR: SelR domain; InterPro: IPR002579 Peptide met	100.0
PRK05508	119	methionine sulfoxide reductase B; Provisional	100.0
KOG0856	146	consensus Predicted pilin-like transcription facto	100.0
PRK14018	521	trifunctional thioredoxin/methionine sulfoxide red	100.0
PRK05550	283	bifunctional methionine sulfoxide reductase B/A pr	100.0
PF03226	96	Yippee-Mis18: Yippee zinc-binding/DNA-binding /Mis	93.67

>COG0229 Conserved domain frequently associated with peptide methionine sulfoxide reductase [Posttranslational modification, protein turnover, chaperones]

Probab=100.00  E-value=7e-71  Score=448.56  Aligned_cols=126  Identities=60%  Similarity=1.034  Sum_probs=122.0

Q ss_pred             CCCCHHHHHhcCCHHHHHHHhhcCCCCCccCCCCCCCCceEEEcccCCccccCCCCcccCCCCCccccccCC-CCcEEee
Q 028408           83 ASISDEEWKRRLTGEQYYITRQKGTERAFTGEYWNTKTPGTYHCICCDTPLFESSTKFDSGTGWPSYYQPIG-SNMKSKL  161 (209)
Q Consensus        83 ~~~s~~ewr~~Ltp~qy~Vlr~~GTE~pFsg~y~~~~~~GiY~C~~Cg~pLF~S~~KFdSg~GWPSF~~pi~-~~v~~~~  161 (209)
                      +.++++|||++|||+||+|||++|||+||+|+||+++++|+|+|++||+|||+|++|||||||||||++||+ ++|.++.
T Consensus         2 ~~~sd~e~~~~Lt~~qy~Vtq~~gTE~pft~~y~~~~~~GiY~c~~cg~pLF~S~~KfdSgcGWPSF~~pi~~~~I~~~~   81 (140)
T COG0229           2 IKPSDEELKEKLTPEQYRVTQNHGTERPFTGEYLDNKEKGIYVCIVCGEPLFSSEDKFDSGCGWPSFTKPISPDAITYKE   81 (140)
T ss_pred             CccchHHHHHhcCHHHHHHHHhcCCCCCCCChhhcccCCceEEeecCCCccccccccccCCCCCccccccCCcccceEee
Confidence            357899999999999999999999999999999999999999999999999999999999999999999996 6899999


Q ss_pred             cCCCCCCcEEEEEcCCCCCCccccCCCCCCCCC-ceeeecceeeeeeeC
Q 028408          162 DLSIIFMPRQEVLCAVCDAHLGHVFDDGPPPTG-KRYCINSASLKLKPK  209 (209)
Q Consensus       162 D~s~~gm~RtEV~C~~Cg~HLGHVF~DGP~Ptg-~RYCINS~sL~F~P~  209 (209)
                      |.|+ ||.||||+|++||+||||||+|||+|+| +|||||||||+|+|+
T Consensus        82 D~S~-gM~RtEVrc~~c~sHLGHVF~DGP~~tgglRYCINSasL~Fip~  129 (140)
T COG0229          82 DRSH-GMVRTEVRCANCDSHLGHVFPDGPPPTGGLRYCINSASLRFIPK  129 (140)
T ss_pred             ccCC-CcEEEEEEecCCCCccccccCCCCCCCCCeeEeecchheeecch
Confidence            9997 9999999999999999999999999998 999999999999985

>TIGR00357 methionine-R-sulfoxide reductase

Probab=100.00  E-value=1e-69  Score=440.50  Aligned_cols=124  Identities=58%  Similarity=0.982  Sum_probs=120.9

Q ss_pred             CCHHHHHhcCCHHHHHHHhhcCCCCCccCCCCCCCCceEEEcccCCccccCCCCcccCCCCCccccccC-CCCcEEeecC
Q 028408           85 ISDEEWKRRLTGEQYYITRQKGTERAFTGEYWNTKTPGTYHCICCDTPLFESSTKFDSGTGWPSYYQPI-GSNMKSKLDL  163 (209)
Q Consensus        85 ~s~~ewr~~Ltp~qy~Vlr~~GTE~pFsg~y~~~~~~GiY~C~~Cg~pLF~S~~KFdSg~GWPSF~~pi-~~~v~~~~D~  163 (209)
                      ++++|||+.|||+||+|+|++|||+||||+||+++++|+|+|++||+|||+|++|||||||||||+++| +++|.++.|.
T Consensus         2 ~~~~ewr~~Lt~~qy~V~r~~gTE~pftg~y~~~~~~G~Y~C~~Cg~pLF~S~~KfdSg~GWPSF~~~i~~~~V~~~~D~   81 (134)
T TIGR00357         2 PSDEELKKKLTPLQYEVTQNAGTEPPFTNEYWDNKEEGIYVDITCGEPLFSSEDKFDSGCGWPSFYKPISEEVVAYERDE   81 (134)
T ss_pred             CCHHHHHHhCCHHHHHHHHHhCCCCCCCCCCCCCCCCeEEEccCCCCccccccchhcCCCCCcCcCcccCCCceEEeecC
Confidence            689999999999999999999999999999999999999999999999999999999999999999999 5789999999


Q ss_pred             CCCCCcEEEEEcCCCCCCccccCCCCCCCCCceeeecceeeeeeeC
Q 028408          164 SIIFMPRQEVLCAVCDAHLGHVFDDGPPPTGKRYCINSASLKLKPK  209 (209)
Q Consensus       164 s~~gm~RtEV~C~~Cg~HLGHVF~DGP~Ptg~RYCINS~sL~F~P~  209 (209)
                      ++ ||+||||+|++||+||||||+|||+|||+||||||+||+|+|+
T Consensus        82 s~-gm~RtEv~C~~Cg~HLGHVF~DGP~ptg~RyCINs~sL~F~p~  126 (134)
T TIGR00357        82 SH-GMIRTEVRCRNCDAHLGHVFDDGPEPTGLRYCINSAALKFIPL  126 (134)
T ss_pred             CC-CcEEEEEEecCCCCccCcccCCCCCCCCceEeecceeEecccc
Confidence            96 9999999999999999999999999999999999999999984

This model describes a domain found in PilB, a protein important for pilin expression, N-terminal to a domain coextensive to with the known peptide methionine sulfoxide reductase (MsrA), a protein repair enzyme, of E. coli. Among the early completed genomes, this module is found if and only if MsrA is also found, whether N-terminal to MsrA (as for Helicobacter pylori), C-terminal (as for Treponema pallidum), or in a separate polypeptide. Although the function of this region is not clear, an auxiliary function to MsrA is suggested.

>PRK00222 methionine sulfoxide reductase B; Provisional

Probab=100.00  E-value=6.4e-69  Score=439.33  Aligned_cols=126  Identities=60%  Similarity=1.057  Sum_probs=122.2

Q ss_pred             CCCCHHHHHhcCCHHHHHHHhhcCCCCCccCCCCCCCCceEEEcccCCccccCCCCcccCCCCCccccccCC-CCcEEee
Q 028408           83 ASISDEEWKRRLTGEQYYITRQKGTERAFTGEYWNTKTPGTYHCICCDTPLFESSTKFDSGTGWPSYYQPIG-SNMKSKL  161 (209)
Q Consensus        83 ~~~s~~ewr~~Ltp~qy~Vlr~~GTE~pFsg~y~~~~~~GiY~C~~Cg~pLF~S~~KFdSg~GWPSF~~pi~-~~v~~~~  161 (209)
                      +.++++|||+.|||+||+|+|++||||||||+||+++++|+|+|++||+|||+|++|||||||||||+++|+ ++|+.+.
T Consensus         3 ~~~~~~ew~~~Lt~~qy~V~r~~gTE~pftg~~~~~~~~G~Y~C~~Cg~pLF~S~~Kf~Sg~GWPSF~~~i~~~~V~~~~   82 (142)
T PRK00222          3 IEKSKEEWKKQLTPEQYRVTQEHGTERPFTGEYLDNKEKGIYVCIVCGEPLFSSDTKFDSGCGWPSFTKPIDEEAIRELR   82 (142)
T ss_pred             ccCCHHHHHhhCCHHHHHHHHhcCCCCCCCCCCCCCCCCeEEEecCCCchhcCCcccccCCCCCcCcCcccCCCceEEee
Confidence            457999999999999999999999999999999999999999999999999999999999999999999995 7899999


Q ss_pred             cCCCCCCcEEEEEcCCCCCCccccCCCCCCCCCceeeecceeeeeeeC
Q 028408          162 DLSIIFMPRQEVLCAVCDAHLGHVFDDGPPPTGKRYCINSASLKLKPK  209 (209)
Q Consensus       162 D~s~~gm~RtEV~C~~Cg~HLGHVF~DGP~Ptg~RYCINS~sL~F~P~  209 (209)
                      |.++ ||.||||+|++||+||||||+|||+|||+||||||+||+|+|+
T Consensus        83 D~s~-gm~RtEv~C~~Cg~HLGHVF~DGP~ptg~RyCINs~sL~F~p~  129 (142)
T PRK00222         83 DTSH-GMVRTEVRCANCDSHLGHVFPDGPKPTGLRYCINSASLKFIPK  129 (142)
T ss_pred             ccCC-CceEEEEEeCCCCCccCcccCCCCCCCCCEeeeceeeEEeecc
Confidence            9986 9999999999999999999999999999999999999999985

>PF01641 SelR: SelR domain; InterPro: IPR002579 Peptide methionine sulphoxide reductase (Msr) reverses the inactivation of many proteins due to the oxidation of critical methionine residues by reducing methionine sulphoxide, Met(O), to methionine []

Probab=100.00  E-value=1.4e-68  Score=428.99  Aligned_cols=122  Identities=66%  Similarity=1.207  Sum_probs=115.4

Q ss_pred             HHHHHhcCCHHHHHHHhhcCCCCCccCCCCCCCCceEEEcccCCccccCCCCcccCCCCCccccccCCC-CcEEeecCCC
Q 028408           87 DEEWKRRLTGEQYYITRQKGTERAFTGEYWNTKTPGTYHCICCDTPLFESSTKFDSGTGWPSYYQPIGS-NMKSKLDLSI  165 (209)
Q Consensus        87 ~~ewr~~Ltp~qy~Vlr~~GTE~pFsg~y~~~~~~GiY~C~~Cg~pLF~S~~KFdSg~GWPSF~~pi~~-~v~~~~D~s~  165 (209)
                      |+|||++|||+||+|||++|||+||||+||+++++|+|+|++||+|||+|++|||||||||||+++|++ +|..+.|.++
T Consensus         1 d~ew~~~Lt~~qy~V~r~~gTE~pfsg~y~~~~~~G~Y~C~~Cg~pLF~S~~Kf~Sg~GWPSF~~~i~~~~v~~~~D~s~   80 (124)
T PF01641_consen    1 DEEWRKRLTPEQYRVLREKGTERPFSGEYWDHKEEGIYVCAVCGTPLFSSDTKFDSGCGWPSFWQPIPGDAVKEREDFSH   80 (124)
T ss_dssp             -HHHHHHSCHHHHHHHHHTTSSSTTSSGGCCTTSSEEEEETTTS-EEEEGGGEETSSSSSSEESSCSSTTSEEEEEEECT
T ss_pred             CHHHHhhCCHHHHHHHHhcCCCCCCccCCcCCCCCEEEEcCCCCCccccCcccccCCcCCccccCcCChHHEEEeccccC
Confidence            789999999999999999999999999999999999999999999999999999999999999999986 8999999996


Q ss_pred             CCCcEEEEEcCCCCCCccccCCCCCCC-CCceeeecceeeeeeeC
Q 028408          166 IFMPRQEVLCAVCDAHLGHVFDDGPPP-TGKRYCINSASLKLKPK  209 (209)
Q Consensus       166 ~gm~RtEV~C~~Cg~HLGHVF~DGP~P-tg~RYCINS~sL~F~P~  209 (209)
                       ||+||||+|++||+||||||+|||+| ||+||||||+||+|+|+
T Consensus        81 -g~~R~Ev~C~~Cg~HLGHVF~DGp~~~tg~RyCINS~sL~F~p~  124 (124)
T PF01641_consen   81 -GMVRTEVRCARCGSHLGHVFDDGPPPPTGLRYCINSASLKFIPK  124 (124)
T ss_dssp             -SSEEEEEEETTTCCEEEEEESTSSTTCTSCEEEE-GGGEEEEE-
T ss_pred             -CceEEEEEecCCCCccccEeCCCCCCCCCcEEEeeeeeEEEecC
Confidence             99999999999999999999999987 69999999999999996

It is present in most living organisms, and the cognate structural gene belongs to the so-called minimum gene set [, ]. The domains: MsrA and MsrB, reduce different epimeric forms of methionine sulphoxide. This group represents MsrB, the crystal structure of which has been determined to 1.8A []. The overall structure shows no resemblance to the structures of MsrA (IPR002569 from INTERPRO) from other organisms; though the active sites show approximate mirror symmetry. In each case, conserved amino acid motifs mediate the stereo-specific recognition and reduction of the substrate. Unlike the MsrA domain, the MsrB domain activates the cysteine or selenocysteine nucleophile through a unique Cys-Arg-Asp/Glu catalytic triad. The collapse of the reaction intermediate most likely results in the formation of a sulphenic or selenenic acid moiety. Regeneration of the active site occurs through a series of thiol-disulphide exchange steps involving another active site Cys residue and thioredoxin. In a number of pathogenic bacteria, including Neisseria gonorrhoeae, the MsrA and MsrB domains are fused; the MsrA being N-terminal to MsrB. This arrangement is reversed in Treponema pallidum. In N. gonorrhoeae and Neisseria meningitidis, a thioredoxin domain is fused to the N terminus. This may function to reduce the active sites of the downstream MsrA and MsrB domains. ; GO: 0008113 peptide-methionine-(S)-S-oxide reductase activity, 0055114 oxidation-reduction process; PDB: 1L1D_A 3E0O_D 2KZN_A 3HCG_B 3HCH_A 2L1U_A 3MAO_A 2K8D_A 3HCJ_A 3HCI_A ....

>PRK05508 methionine sulfoxide reductase B; Provisional

Probab=100.00  E-value=3.2e-65  Score=407.25  Aligned_cols=115  Identities=44%  Similarity=0.804  Sum_probs=110.4

Q ss_pred             hcCCHHHHHHHhhcCCCCCccCCCCCCCCceEEEcccCCccccCCCCcccCCCCCccccccCCCCcEEeecCCCCCCcEE
Q 028408           92 RRLTGEQYYITRQKGTERAFTGEYWNTKTPGTYHCICCDTPLFESSTKFDSGTGWPSYYQPIGSNMKSKLDLSIIFMPRQ  171 (209)
Q Consensus        92 ~~Ltp~qy~Vlr~~GTE~pFsg~y~~~~~~GiY~C~~Cg~pLF~S~~KFdSg~GWPSF~~pi~~~v~~~~D~s~~gm~Rt  171 (209)
                      ++|||+||+|+|++||||||+|+||+++++|+|+|++||+|||+|++||||||||||||+||+++|+++.|.+   |.||
T Consensus         2 ~~Lt~~qy~V~r~~gTE~pftg~y~~~~~~G~Y~C~~Cg~pLF~S~~KfdSg~GWPSF~~~i~~~v~~~~D~~---~~Rt   78 (119)
T PRK05508          2 NELTPEEEAVILRKGTEPPFSGEYNDFFEKGTYVCKQCGAPLYRSEDKFKSGCGWPSFDDEIKGAVKRIPDAD---GRRT   78 (119)
T ss_pred             CcCCHHHHHHHHhcCCCCCCCCCCcCcCCCeEEEecCCCCccccccccccCCCCCcccCcccccceEEEecCC---CcEE
Confidence            5899999999999999999999999999999999999999999999999999999999999999999999987   4699


Q ss_pred             EEEcCCCCCCccccCC-CCCCCCCceeeecceeeeeeeC
Q 028408          172 EVLCAVCDAHLGHVFD-DGPPPTGKRYCINSASLKLKPK  209 (209)
Q Consensus       172 EV~C~~Cg~HLGHVF~-DGP~Ptg~RYCINS~sL~F~P~  209 (209)
                      ||+|++||+||||||+ |||+|||+|||||||||+|+|+
T Consensus        79 Ev~C~~C~~HLGHVF~d~gp~ptg~RyCINS~sL~F~p~  117 (119)
T PRK05508         79 EIVCANCGGHLGHVFEGEGFTPKNTRHCVNSISLKFVPD  117 (119)
T ss_pred             EEEeCCCCCccCcccCCCCCCCCCCEEeecceeEEeecC
Confidence            9999999999999998 5678999999999999999985

>KOG0856 consensus Predicted pilin-like transcription factor [Posttranslational modification, protein turnover, chaperones]

Probab=100.00  E-value=3.2e-64  Score=410.81  Aligned_cols=128  Identities=48%  Similarity=0.870  Sum_probs=123.0

Q ss_pred             CCCCCCHHHHHhcCCHHHHHHHhhcCCCCCccCCCCCCCCceEEEcccCCccccCCCCcccCCCCCccccccC-CCCcEE
Q 028408           81 DYASISDEEWKRRLTGEQYYITRQKGTERAFTGEYWNTKTPGTYHCICCDTPLFESSTKFDSGTGWPSYYQPI-GSNMKS  159 (209)
Q Consensus        81 ~~~~~s~~ewr~~Ltp~qy~Vlr~~GTE~pFsg~y~~~~~~GiY~C~~Cg~pLF~S~~KFdSg~GWPSF~~pi-~~~v~~  159 (209)
                      ..++++++|||++||||||+|||++|||+||+|+|++++++|+|+|++|++|||+|++|||||||||+|++.| +++|..
T Consensus        12 ~~v~k~~~EWr~~LsPeQ~~v~RekgTE~p~tGey~~~~e~GvY~C~~C~~pLykS~tKfdsgcGWPAF~e~i~~gaI~r   91 (146)
T KOG0856|consen   12 GSVQKNDEEWRKVLSPEQFRVLREKGTERPGTGEYTKHFEEGVYVCAGCGTPLYKSTTKFDSGCGWPAFFEAIGPGAITR   91 (146)
T ss_pred             cccccCHHHHHhhcCHHHhhhhHhhcccCCCCcccccccCCceEEEeecCCccccccccccCCCCCchhhhccCCCceee
Confidence            3467899999999999999999999999999999999999999999999999999999999999999999999 799999


Q ss_pred             eecCCCCCCcEEEEEcCCCCCCccccCC-CCCC-CCCceeeecceeeeeeeC
Q 028408          160 KLDLSIIFMPRQEVLCAVCDAHLGHVFD-DGPP-PTGKRYCINSASLKLKPK  209 (209)
Q Consensus       160 ~~D~s~~gm~RtEV~C~~Cg~HLGHVF~-DGP~-Ptg~RYCINS~sL~F~P~  209 (209)
                      ..|.|. ||.|+||+|++||+||||||+ |||+ ||++|||||||||+|.|+
T Consensus        92 ~~d~s~-~~~R~Ev~Ca~C~~HLGHVF~~eG~~~Pt~~R~CiNS~sL~F~~~  142 (146)
T KOG0856|consen   92 TPDNSR-GGRRTEVSCATCGGHLGHVFKGEGPKTPTDERHCINSVSLKFVPA  142 (146)
T ss_pred             ccccCC-CCcceEEEEeecCCceeeeecCCCCCCCCCceeEeeeeeeeeccC
Confidence            999886 899999999999999999998 9998 999999999999999984

>PRK14018 trifunctional thioredoxin/methionine sulfoxide reductase A/B protein; Provisional

Probab=100.00  E-value=4.3e-59  Score=443.05  Aligned_cols=129  Identities=50%  Similarity=0.788  Sum_probs=123.3

Q ss_pred             CCCCCCCHHHHHhcCCHHHHHHHhhcCCCCCccCCCCCCCCceEEEcccCCccccCCCCcccCCCCCccccccCC-CCcE
Q 028408           80 VDYASISDEEWKRRLTGEQYYITRQKGTERAFTGEYWNTKTPGTYHCICCDTPLFESSTKFDSGTGWPSYYQPIG-SNMK  158 (209)
Q Consensus        80 ~~~~~~s~~ewr~~Ltp~qy~Vlr~~GTE~pFsg~y~~~~~~GiY~C~~Cg~pLF~S~~KFdSg~GWPSF~~pi~-~~v~  158 (209)
                      .++..++++|||++|||+||+|+|++|||+||||+||+++++|+|+|++||+|||+|++|||||||||||++||+ ++|.
T Consensus       375 ~~~~~~~~~~~~~~Lt~~~y~v~~~~gtE~~f~~~~~~~~~~G~y~c~~c~~pLf~s~~Kf~sg~GWPsF~~~i~~~~v~  454 (521)
T PRK14018        375 ATYKKPSDAELKRTLTEEQYQITQNAATERAFSHEYDHLFKPGIYVDVVSGEPLFSSADKYDSGCGWPSFTRPIDAKVVT  454 (521)
T ss_pred             hhccCCChHHHhccCCHHHHHHHHhcCCCCCCCCCCcCCCCCEEEEecCCCCccccCcccccCCCCCcccCcccCcCceE
Confidence            347789999999999999999999999999999999999999999999999999999999999999999999997 5688


Q ss_pred             EeecCCCCCCcEEEEEcCCCCCCccccCCCCCC-CCCceeeecceeeeeeeC
Q 028408          159 SKLDLSIIFMPRQEVLCAVCDAHLGHVFDDGPP-PTGKRYCINSASLKLKPK  209 (209)
Q Consensus       159 ~~~D~s~~gm~RtEV~C~~Cg~HLGHVF~DGP~-Ptg~RYCINS~sL~F~P~  209 (209)
                      ++.|.++ ||.||||+|++||+||||||+|||+ |||+||||||+||+|+|+
T Consensus       455 ~~~d~s~-g~~R~Ev~c~~c~~HLGHvf~dgp~~~~g~RyCiNs~~l~f~~~  505 (521)
T PRK14018        455 EHDDFSY-NMRRTEVRSRAADSHLGHVFPDGPRDKGGLRYCINGASLKFIPL  505 (521)
T ss_pred             EeeccCC-CceEEEEEECCCCCcCCcccCCCCCCCCCCEeeeceeEEEeecc
Confidence            8999986 9999999999999999999999996 699999999999999985

>PRK05550 bifunctional methionine sulfoxide reductase B/A protein; Provisional

Probab=100.00  E-value=1.6e-58  Score=412.30  Aligned_cols=118  Identities=45%  Similarity=0.854  Sum_probs=114.1

Q ss_pred             HHHhcCCHHHHHHHhhcCCCCCccCCCCCCCCceEEEcccCCccccCCCCcccCCCCCccccccCCCCcEEeecCCCCCC
Q 028408           89 EWKRRLTGEQYYITRQKGTERAFTGEYWNTKTPGTYHCICCDTPLFESSTKFDSGTGWPSYYQPIGSNMKSKLDLSIIFM  168 (209)
Q Consensus        89 ewr~~Ltp~qy~Vlr~~GTE~pFsg~y~~~~~~GiY~C~~Cg~pLF~S~~KFdSg~GWPSF~~pi~~~v~~~~D~s~~gm  168 (209)
                      .||++|||+||+|+|++||||||+|+||+++++|+|+|++||+|||+|++|||||||||||++||+++|..+.|.+  ||
T Consensus         2 ~~~~~Lt~~~y~v~r~~gTE~pf~g~~~~~~~~G~y~c~~c~~~LF~s~~Kf~sg~GWPsF~~~~~~~~~~~~d~~--~~   79 (283)
T PRK05550          2 DKMKSLTPFEYRVIEDKGTERPFSGEYYDHDEKGVYLCRRCGAPLFRSEDKFNSGCGWPSFDDEIPGAVKRLPDAD--GR   79 (283)
T ss_pred             hhhhhCCHHHHHHHHhcCCCCCCCCcCcCCCCCcEEEcCCCCchhcCChhhccCCCCCcCcCcccCCccEEEEcCC--Cc
Confidence            6999999999999999999999999999999999999999999999999999999999999999999999999886  66


Q ss_pred             cEEEEEcCCCCCCccccCC-CCCCCCCceeeecceeeeeeeC
Q 028408          169 PRQEVLCAVCDAHLGHVFD-DGPPPTGKRYCINSASLKLKPK  209 (209)
Q Consensus       169 ~RtEV~C~~Cg~HLGHVF~-DGP~Ptg~RYCINS~sL~F~P~  209 (209)
                       ||||+|++||+||||||+ |||+|||+||||||+||+|+|+
T Consensus        80 -R~Ev~c~~c~~HLGHvF~ddgp~ptg~RyCiNs~sL~f~p~  120 (283)
T PRK05550         80 -RTEIVCANCGAHLGHVFEGEGLTPKNTRHCVNSASLDFVPA  120 (283)
T ss_pred             -eEEEEecCCCCccCcccCCCCCCCCCccccccccccccCcc
Confidence             999999999999999998 8899999999999999999985

>PF03226 Yippee-Mis18: Yippee zinc-binding/DNA-binding /Mis18, centromere assembly; InterPro: IPR004910 This entry represents the Yippee-like (YPEL) family of putative zinc-binding proteins which is highly conserved among eukaryotes

Probab=93.67  E-value=0.035  Score=41.78  Aligned_cols=81  Identities=19%  Similarity=0.449  Sum_probs=47.7

Q ss_pred             EEEcccCCccccCCCCccc-CCCCCcccc-ccCCCCcEEeecCCCCCC-----cEEEEEcCCCCCCccccCCCCCCC---
Q 028408          123 TYHCICCDTPLFESSTKFD-SGTGWPSYY-QPIGSNMKSKLDLSIIFM-----PRQEVLCAVCDAHLGHVFDDGPPP---  192 (209)
Q Consensus       123 iY~C~~Cg~pLF~S~~KFd-Sg~GWPSF~-~pi~~~v~~~~D~s~~gm-----~RtEV~C~~Cg~HLGHVF~DGP~P---  192 (209)
                      +|.|+.|.++|=+|..-.. .|..=++|- ..+...+...+.... |.     .=..+.|++|+.+||=.+...|++   
T Consensus         2 vf~C~~C~t~l~ds~~lvs~~g~~~~a~l~~~v~~~~~~~~~~~t-~~~~~~~~~~~l~C~~C~~~lGwkY~~a~~~~~~   80 (96)
T PF03226_consen    2 VFQCKNCKTILADSNELVSFHGREGKAYLFNNVSNGVPVDRELMT-GETGGDHTVRDLFCSGCNTILGWKYESAPEEQKY   80 (96)
T ss_pred             EEECCCCCCCcCCHHHheecCCCCccEEEEeeeeecccccceEEE-eeCCCCEEEEEeEcccCChhHCcEEEEcCHhHhh
Confidence            7999999999988776666 443224332 122222111110000 11     135799999999999999766654   


Q ss_pred             CCceeeecceee
Q 028408          193 TGKRYCINSASL  204 (209)
Q Consensus       193 tg~RYCINS~sL  204 (209)
                      ---+|++.-++|
T Consensus        81 k~g~file~~~i   92 (96)
T PF03226_consen   81 KEGKFILEKASI   92 (96)
T ss_pred             hCCEEEEEhhHE
Confidence            334566665554

The first protein in this family to be characterised, the Yippee protein from Drosophila, was identified by yeast interaction trap screen as a protein that physically interacts with moth hemolin []. It was subsequently found to be a member of a highly conserved family of proteins found in diverse eukaryotes including plants, animals and fungi []. Mammals contain five members of this family, YPEL1 to YPEL5, while other organisms tend to contain only two or three members. The mammalian proteins all appear to localise in the nucleus. YPEL1-4 are located in an unknown structure located on or close to the mitotic apparatus in the mitotic phase, whereas in the interphase they are located in the nuclei and nucleoli. In contrast, YPEL5 is localised to the centrosome and nucleus during interphase and at the mitotic spindle during mitosis, suggesting a function distinct from that of YPEL1-4. The localisation of the YPEL proteins suggests a novel, thopugh still unknown, function involved in cell division.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	209
2k8d_A	151	Solution Structure Of A Zinc-Binding Methionine Sul		1e-38
2l1u_A	143	Structure-Functional Analysis Of Mammalian Msrb2 Pr		2e-37
3cez_A	164	Crystal Structure Of Methionine-R-Sulfoxide Reducta		4e-31
3e0o_A	144	Crystal Structure Of Msrb Length = 144		2e-27
2kzn_A	151	Solution Nmr Structure Of Peptide Methionine Sulfox		2e-27
3hcj_A	154	Structure Of Msrb From Xanthomonas Campestris (Oxid		6e-27
3hci_A	154	Structure Of Msrb From Xanthomonas Campestris (Comp		6e-26
3hch_A	146	Structure Of The C-Terminal Domain (Msrb) Of Neisse		2e-25
1l1d_A	152	Crystal Structure Of The C-Terminal Methionine Sulf		4e-25
3hcg_A	146	Structure Of The C-Terminal Domain (Msrb) Of Neisse		7e-25
3e0m_A	313	Crystal Structure Of Fusion Protein Of Msra And Msr		2e-18
3mao_A	105	Crystal Structure Of Human Methionine-R-Sulfoxide R		4e-08
2kv1_A	124	Insights Into Function, Catalytic Mechanism And Fol		6e-08

>pdb|2K8D|A Chain A, Solution Structure Of A Zinc-Binding Methionine Sulfoxide Reductase Length = 151

Iteration: 1
 Score =  155 bits (393), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 77/142 (54%), Positives = 96/142 (67%), Gaps = 5/142 (3%)
Query: 72  LSSAEANRVDYAS---ISDEEWKRRLTGEQYYITRQKGTERAFTGEYWNTKTPGTYHCIC 128
           + S   NRV+      +SD+EW+  L  E + + R+ GTE  FTG+Y +    G Y CIC
Sbjct: 7   IFSVAKNRVEMVERIELSDDEWREILDPEAFRVARKAGTEPPFTGKYHDLHDDGIYRCIC 66
Query: 129 CDTPLFESSTKFDSGTGWPSYYQPIGS-NMKSKLDLSIIFMPRQEVLCAVCDAHLGHVFD 187
           C T LF+S TKFDSGTGWPS+Y  +   N+K + D S+  M R EVLCA CDAHLGHVFD
Sbjct: 67  CGTDLFDSETKFDSGTGWPSFYDVVSEHNIKLREDRSL-GMVRCEVLCARCDAHLGHVFD 125
Query: 188 DGPPPTGKRYCINSASLKLKPK 209
           DGP PTGKRYC+NSA+LK  P+
Sbjct: 126 DGPRPTGKRYCMNSAALKFIPR 147

>pdb|2L1U|A Chain A, Structure-Functional Analysis Of Mammalian Msrb2 Protein Length = 143

Iteration: 1
 Score =  152 bits (383), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 69/128 (53%), Positives = 90/128 (70%), Gaps = 9/128 (7%)
Query: 89  EWKRRLTGEQYYITRQKGTERAFTGEYWNTKTPGTYHCICCDTPLFESSTKFDSGTGWPS 148
           +W+++LT EQ+Y+TR+KGTE  F+G Y N K  G YHC+CCD+PLF S  K+ SGTGWPS
Sbjct: 3   DWQKKLTPEQFYVTREKGTEAPFSGMYLNNKETGMYHCVCCDSPLFSSEKKYCSGTGWPS 62
Query: 149 YYQPIGS--------NMKSKLDLSIIFMPRQEVLCAVCDAHLGHVFDDGPPPTGKRYCIN 200
           + +  GS         +  +LD S+   PR EV+C  C+AHLGHVF DGP PTG+R+CIN
Sbjct: 63  FSEAYGSKGSDESHTGILRRLDTSLG-CPRMEVVCKQCEAHLGHVFPDGPKPTGQRFCIN 121
Query: 201 SASLKLKP 208
           S +LK KP
Sbjct: 122 SVALKFKP 129

>pdb|3CEZ|A Chain A, Crystal Structure Of Methionine-R-Sulfoxide Reductase From Burkholderia Pseudomallei Length = 164

Iteration: 1
 Score =  130 bits (328), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 67/126 (53%), Positives = 82/126 (65%), Gaps = 3/126 (2%)
Query: 86  SDEEWKRRLTGEQYYITRQKGTERAFTGEYWNTKTPGTYHCICCDTPLFESSTKFDSGTG 145
            D E +RRLT  QY +T+   TE  FTGEY +T+  G YHC+ C T LFES  K+ SG G
Sbjct: 36  DDAELRRRLTPMQYEVTQHAATEPPFTGEYTDTEDAGIYHCVVCGTALFESGAKYHSGCG 95
Query: 146 WPSYYQPI-GSNMKSKLDLSIIFMPRQEVLCAVCDAHLGHVFDDGP-PPTGKRYCINSAS 203
           WPSY++PI G  +  K+D +   M R EV C  C AHLGHVF+DGP   TG RYCINSA+
Sbjct: 96  WPSYFKPIDGEVIDEKMDYT-HGMTRVEVRCNQCGAHLGHVFEDGPRDKTGLRYCINSAA 154
Query: 204 LKLKPK 209
           L  + K
Sbjct: 155 LNFEAK 160

>pdb|3E0O|A Chain A, Crystal Structure Of Msrb Length = 144

Iteration: 1
 Score =  119 bits (297), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 61/126 (48%), Positives = 75/126 (59%), Gaps = 1/126 (0%)
Query: 84  SISDEEWKRRLTGEQYYITRQKGTERAFTGEYWNTKTPGTYHCICCDTPLFESSTKFDSG 143
           + + EE  + L   QY +T+  GTE  F  EYW+ K  G Y  I    PLF S  KFDS 
Sbjct: 3   AYNKEEKIKSLNRMQYEVTQNNGTEPPFQNEYWDHKEEGLYVDIVSGKPLFTSKDKFDSQ 62
Query: 144 TGWPSYYQPIGSNMKSKLDLSIIFMPRQEVLCAVCDAHLGHVFDDGPPPTGKRYCINSAS 203
            GWPS+ +PI   ++ KLD S   M R EV     D+HLGHVF+DGP P G RYCINSA+
Sbjct: 63  CGWPSFTKPIEEEVEEKLDTSHG-MIRTEVRSRTADSHLGHVFNDGPGPNGLRYCINSAA 121
Query: 204 LKLKPK 209
           L+  PK
Sbjct: 122 LRFVPK 127

>pdb|2KZN|A Chain A, Solution Nmr Structure Of Peptide Methionine Sulfoxide Reductase Msrb From Bacillus Subtilis, Northeast Structural Genomics Consortium Target Sr10 Length = 151

Iteration: 1
 Score =  118 bits (296), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 61/126 (48%), Positives = 75/126 (59%), Gaps = 1/126 (0%)
Query: 84  SISDEEWKRRLTGEQYYITRQKGTERAFTGEYWNTKTPGTYHCICCDTPLFESSTKFDSG 143
           + + EE  + L   QY +T+  GTE  F  EYW+ K  G Y  I    PLF S  KFDS 
Sbjct: 2   AYNKEEKIKSLNRMQYEVTQNNGTEPPFQNEYWDHKEEGLYVDIVSGKPLFTSKDKFDSQ 61
Query: 144 TGWPSYYQPIGSNMKSKLDLSIIFMPRQEVLCAVCDAHLGHVFDDGPPPTGKRYCINSAS 203
            GWPS+ +PI   ++ KLD S   M R EV     D+HLGHVF+DGP P G RYCINSA+
Sbjct: 62  CGWPSFTKPIEEEVEEKLDTSHG-MIRTEVRSRTADSHLGHVFNDGPGPNGLRYCINSAA 120
Query: 204 LKLKPK 209
           L+  PK
Sbjct: 121 LRFVPK 126

>pdb|3HCJ|A Chain A, Structure Of Msrb From Xanthomonas Campestris (Oxidized Form) Length = 154

Iteration: 1
 Score =  117 bits (292), Expect = 6e-27,   Method: Compositional matrix adjust.
 Identities = 53/113 (46%), Positives = 70/113 (61%)
Query: 94  LTGEQYYITRQKGTERAFTGEYWNTKTPGTYHCICCDTPLFESSTKFDSGTGWPSYYQPI 153
           L+ E+  +    GTE  F G + + K  G Y C  C  PLF S+ KFDSGTGWPS++ P 
Sbjct: 21  LSDEEQRVLLHHGTEAPFCGVFLDNKLDGVYTCRLCGLPLFRSNAKFDSGTGWPSFFAPY 80
Query: 154 GSNMKSKLDLSIIFMPRQEVLCAVCDAHLGHVFDDGPPPTGKRYCINSASLKL 206
                 ++  +   M R E++CA CD+HLGHVF DGPPPTG+R+C+NS SL  
Sbjct: 81  DPAHVREIRDTSYGMIRTEIVCARCDSHLGHVFPDGPPPTGERHCLNSVSLAF 133

>pdb|3HCI|A Chain A, Structure Of Msrb From Xanthomonas Campestris (Complex-Like Form) Length = 154

Iteration: 1
 Score =  113 bits (283), Expect = 6e-26,   Method: Compositional matrix adjust.
 Identities = 52/113 (46%), Positives = 69/113 (61%)
Query: 94  LTGEQYYITRQKGTERAFTGEYWNTKTPGTYHCICCDTPLFESSTKFDSGTGWPSYYQPI 153
           L+ E+  +    GTE  F G + + K  G Y C  C  PLF S+ KFDSGTGWPS++ P 
Sbjct: 21  LSDEEQRVLLHHGTEAPFCGVFLDNKLDGVYTCRLCGLPLFRSNAKFDSGTGWPSFFAPY 80
Query: 154 GSNMKSKLDLSIIFMPRQEVLCAVCDAHLGHVFDDGPPPTGKRYCINSASLKL 206
                 ++  +   M R E++CA CD+HLGHVF DGPPPTG+R+ +NS SL  
Sbjct: 81  DPAHVREIRDTSYGMVRTEIVCARCDSHLGHVFPDGPPPTGERHSLNSVSLAF 133

>pdb|3HCH|A Chain A, Structure Of The C-Terminal Domain (Msrb) Of Neisseria Meningitidis Pilb (Complex With Substrate) Length = 146

Iteration: 1
 Score =  112 bits (279), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 60/128 (46%), Positives = 74/128 (57%), Gaps = 1/128 (0%)
Query: 82  YASISDEEWKRRLTGEQYYITRQKGTERAFTGEYWNTKTPGTYHCICCDTPLFESSTKFD 141
           Y   SD E KR LT EQY +T+   TE AF+ EY +   PG Y  +    PLF S+ K+D
Sbjct: 2   YKKPSDAELKRTLTEEQYQVTQNSATEYAFSHEYDHLFKPGIYVDVVSGEPLFSSADKYD 61
Query: 142 SGTGWPSYYQPIGSNMKSKLDLSIIFMPRQEVLCAVCDAHLGHVFDDGPPPTGK-RYCIN 200
           SG+GWPS+ +PI +   ++ D     M R EV     D+HLGHVF DGP   G  RY IN
Sbjct: 62  SGSGWPSFTRPIDAKSVTEHDDFSYNMRRTEVRSHAADSHLGHVFPDGPRDKGGLRYSIN 121
Query: 201 SASLKLKP 208
            ASLK  P
Sbjct: 122 GASLKFIP 129

>pdb|1L1D|A Chain A, Crystal Structure Of The C-Terminal Methionine Sulfoxide Reductase Domain (Msrb) Of N. Gonorrhoeae Pilb Length = 152

Iteration: 1
 Score =  111 bits (277), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 60/128 (46%), Positives = 73/128 (57%), Gaps = 1/128 (0%)
Query: 82  YASISDEEWKRRLTGEQYYITRQKGTERAFTGEYWNTKTPGTYHCICCDTPLFESSTKFD 141
           Y   SD E KR LT EQY +T+   TE AF+ EY +   PG Y  +    PLF S+ K+D
Sbjct: 8   YKKPSDAELKRTLTEEQYQVTQNSATEYAFSHEYDHLFKPGIYVDVVSGEPLFSSADKYD 67
Query: 142 SGTGWPSYYQPIGSNMKSKLDLSIIFMPRQEVLCAVCDAHLGHVFDDGPPPTGK-RYCIN 200
           SG GWPS+ +PI +   ++ D       R EV     D+HLGHVF DGP   G  RYCIN
Sbjct: 68  SGCGWPSFTRPIDAKSVTEHDDFSFNXRRTEVRSRAADSHLGHVFPDGPRDKGGLRYCIN 127
Query: 201 SASLKLKP 208
            ASLK  P
Sbjct: 128 GASLKFIP 135

>pdb|3HCG|A Chain A, Structure Of The C-Terminal Domain (Msrb) Of Neisseria Meningitidis Pilb (Reduced Form) Length = 146

Iteration: 1
 Score =  110 bits (274), Expect = 7e-25,   Method: Compositional matrix adjust.
 Identities = 60/128 (46%), Positives = 73/128 (57%), Gaps = 1/128 (0%)
Query: 82  YASISDEEWKRRLTGEQYYITRQKGTERAFTGEYWNTKTPGTYHCICCDTPLFESSTKFD 141
           Y   SD E KR LT EQY +T+   TE AF+ EY +   PG Y  +    PLF S+ K+D
Sbjct: 2   YKKPSDAELKRTLTEEQYQVTQNSATEYAFSHEYDHLFKPGIYVDVVSGEPLFSSADKYD 61
Query: 142 SGTGWPSYYQPIGSNMKSKLDLSIIFMPRQEVLCAVCDAHLGHVFDDGPPPTGK-RYCIN 200
           SG GWPS+ +PI +   ++ D       R EV     D+HLGHVF DGP   G  RYCIN
Sbjct: 62  SGCGWPSFTRPIDAKSVTEHDDFSYNXRRTEVRSHAADSHLGHVFPDGPRDKGGLRYCIN 121
Query: 201 SASLKLKP 208
            ASLK  P
Sbjct: 122 GASLKFIP 129

>pdb|3E0M|A Chain A, Crystal Structure Of Fusion Protein Of Msra And Msrb Length = 313

Iteration: 1
 Score = 88.6 bits (218), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 57/131 (43%), Positives = 68/131 (51%), Gaps = 3/131 (2%)
Query: 81  DYASISDEEWKRRLTGEQYYITRQKGTERAFTGEYWNTKTPGTYHCICCDTPLFESSTKF 140
           +Y   S E  K  L+ E Y +T++  TE  FT  Y  T   G Y  I    PLF +  KF
Sbjct: 167 NYEKPSQEVLKASLSEESYRVTQEAATEAPFTNAYDQTFEEGIYVDITTGEPLFFAKDKF 226
Query: 141 DSGTGWPSYYQPIGSNMKSKL-DLSIIFMPRQEVLCAVCDAHLGHVFDDGPPPTGK-RYC 198
            SG GWPS+ +P+   +     DLS   M R EV      AHLGHVF DGP   G  RYC
Sbjct: 227 ASGCGWPSFSRPLSKELIHYYKDLS-HGMERIEVRSRSGSAHLGHVFTDGPRELGGLRYC 285
Query: 199 INSASLKLKPK 209
           INSASL+   K
Sbjct: 286 INSASLRFVAK 296

>pdb|3MAO|A Chain A, Crystal Structure Of Human Methionine-R-Sulfoxide Reductase B1 (Msrb1) Length = 105

Iteration: 1
 Score = 54.7 bits (130), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 35/99 (35%), Positives = 48/99 (48%), Gaps = 8/99 (8%)
Query: 115 YWNTKTPGTYHCICCDTPLFESSTKFDSGTGWPSYYQPIGSNMKSKLDLSIIFMPRQEVL 174
           + N   PG Y C  C   LF S +K+   + WP++ + I ++  +K         R E L
Sbjct: 5   FQNHFEPGVYVCAKCGYELFSSRSKYAHSSPWPAFTETIHADSVAKRPE----HNRSEAL 60
Query: 175 ---CAVCDAHLGHVF-DDGPPPTGKRYCINSASLKLKPK 209
              C  C   LGH F +DGP P   R+ I S+SLK  PK
Sbjct: 61  KVSCGKCGNGLGHEFLNDGPKPGQSRFSIFSSSLKFVPK 99

>pdb|2KV1|A Chain A, Insights Into Function, Catalytic Mechanism And Fold Evolution Of Mouse Selenoprotein Methionine Sulfoxide Reductase B1 Through Structural Analysis Length = 124

Iteration: 1
 Score = 53.9 bits (128), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 38/104 (36%), Positives = 50/104 (48%), Gaps = 9/104 (8%)
Query: 111 FTGE-YWNTKTPGTYHCICCDTPLFESSTKFDSGTGWPSYYQPIGSNMKSKLDLSIIFMP 169
           F GE + N   PG Y C  C   LF S +K+   + WP++ + I  +  +K         
Sbjct: 7   FGGEVFQNHFEPGVYVCAKCSYELFSSHSKYAHSSPWPAFTETIHPDSVTKCPEKN---- 62
Query: 170 RQEVL---CAVCDAHLGHVF-DDGPPPTGKRYCINSASLKLKPK 209
           R E L   C  C   LGH F +DGP     R+CI S+SLK  PK
Sbjct: 63  RPEALKVSCGKCGNGLGHEFLNDGPKRGQSRFCIFSSSLKFVPK 106
  Database: pdbaa

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	209
2k8d_A	151	Peptide methionine sulfoxide reductase MSRB; therm	6e-88
3hcj_A	154	MSRB, peptide methionine sulfoxide reductase; meth	3e-86
3e0o_A	144	Peptide methionine sulfoxide reductase MSRB; oxido	1e-85
2l1u_A	143	MSRB2, methionine-R-sulfoxide reductase B2, mitoch	4e-85
3cxk_A	164	Methionine-R-sulfoxide reductase; structural genom	6e-83
3hcg_A	146	Peptide methionine sulfoxide reductase MSRA/MSRB;	8e-83
2kao_A	124	Methionine-R-sulfoxide reductase B1; mouse reduced	7e-63
3mao_A	105	Methionine-R-sulfoxide reductase B1; oxidoreductas	6e-60
3e0m_A	313	Peptide methionine sulfoxide reductase MSRA/MSRB 1	1e-54

>2k8d_A Peptide methionine sulfoxide reductase MSRB; thermophilic, Zn binding, metal-binding, oxidoreductase; NMR {Methanothermobacter thermautotrophicusorganism_taxid} Length = 151

 Score =  254 bits (652), Expect = 6e-88
 Identities = 75/142 (52%), Positives = 95/142 (66%), Gaps = 2/142 (1%)

Query: 69  IHLLSSAEANRVDYASISDEEWKRRLTGEQYYITRQKGTERAFTGEYWNTKTPGTYHCIC 128
           I  ++      V+   +SD+EW+  L  E + + R+ GTE  FTG+Y +    G Y CIC
Sbjct: 7   IFSVAKNRVEMVERIELSDDEWREILDPEAFRVARKAGTEPPFTGKYHDLHDDGIYRCIC 66

Query: 129 CDTPLFESSTKFDSGTGWPSYYQPI-GSNMKSKLDLSIIFMPRQEVLCAVCDAHLGHVFD 187
           C T LF+S TKFDSGTGWPS+Y  +   N+K + D S + M R EVLCA CDAHLGHVFD
Sbjct: 67  CGTDLFDSETKFDSGTGWPSFYDVVSEHNIKLREDRS-LGMVRCEVLCARCDAHLGHVFD 125

Query: 188 DGPPPTGKRYCINSASLKLKPK 209
           DGP PTGKRYC+NSA+LK  P+
Sbjct: 126 DGPRPTGKRYCMNSAALKFIPR 147

>3hcj_A MSRB, peptide methionine sulfoxide reductase; methionine sulfoxide reductase B, oxidized form, oxidoreductase; 1.66A {Xanthomonas campestris PV} PDB: 3hci_A* Length = 154

 Score =  250 bits (641), Expect = 3e-86
 Identities = 55/125 (44%), Positives = 74/125 (59%), Gaps = 2/125 (1%)

Query: 86  SDEEWKRRLTGEQYYITRQKGTERAFTGEYWNTKTPGTYHCICCDTPLFESSTKFDSGTG 145
             +     L+ E+  +    GTE  F G + + K  G Y C  C  PLF S+ KFDSGTG
Sbjct: 13  QRDALIAGLSDEEQRVLLHHGTEAPFCGVFLDNKLDGVYTCRLCGLPLFRSNAKFDSGTG 72

Query: 146 WPSYYQPI-GSNMKSKLDLSIIFMPRQEVLCAVCDAHLGHVFDDGPPPTGKRYCINSASL 204
           WPS++ P   ++++   D S   M R E++CA CD+HLGHVF DGPPPTG+R+C+NS SL
Sbjct: 73  WPSFFAPYDPAHVREIRDTS-YGMIRTEIVCARCDSHLGHVFPDGPPPTGERHCLNSVSL 131

Query: 205 KLKPK 209
                
Sbjct: 132 AFTED 136

>3e0o_A Peptide methionine sulfoxide reductase MSRB; oxidoreductase; 2.60A {Bacillus subtilis} PDB: 1xm0_A 2kzn_A Length = 144

 Score =  248 bits (636), Expect = 1e-85
 Identities = 61/124 (49%), Positives = 74/124 (59%), Gaps = 1/124 (0%)

Query: 86  SDEEWKRRLTGEQYYITRQKGTERAFTGEYWNTKTPGTYHCICCDTPLFESSTKFDSGTG 145
           + EE  + L   QY +T+  GTE  F  EYW+ K  G Y  I    PLF S  KFDS  G
Sbjct: 5   NKEEKIKSLNRMQYEVTQNNGTEPPFQNEYWDHKEEGLYVDIVSGKPLFTSKDKFDSQCG 64

Query: 146 WPSYYQPIGSNMKSKLDLSIIFMPRQEVLCAVCDAHLGHVFDDGPPPTGKRYCINSASLK 205
           WPS+ +PI   ++ KLD S   M R EV     D+HLGHVF+DGP P G RYCINSA+L+
Sbjct: 65  WPSFTKPIEEEVEEKLDTS-HGMIRTEVRSRTADSHLGHVFNDGPGPNGLRYCINSAALR 123

Query: 206 LKPK 209
             PK
Sbjct: 124 FVPK 127

>2l1u_A MSRB2, methionine-R-sulfoxide reductase B2, mitochondria; methionine sulfoxide reductase, oxidoreductase; NMR {Mus musculus} Length = 143

 Score =  247 bits (632), Expect = 4e-85
 Identities = 67/128 (52%), Positives = 87/128 (67%), Gaps = 7/128 (5%)

Query: 89  EWKRRLTGEQYYITRQKGTERAFTGEYWNTKTPGTYHCICCDTPLFESSTKFDSGTGWPS 148
           +W+++LT EQ+Y+TR+KGTE  F+G Y N K  G YHC+CCD+PLF S  K+ SGTGWPS
Sbjct: 3   DWQKKLTPEQFYVTREKGTEAPFSGMYLNNKETGMYHCVCCDSPLFSSEKKYCSGTGWPS 62

Query: 149 YYQPIGSNMKSKLDLSI-------IFMPRQEVLCAVCDAHLGHVFDDGPPPTGKRYCINS 201
           + +  GS    +    I       +  PR EV+C  C+AHLGHVF DGP PTG+R+CINS
Sbjct: 63  FSEAYGSKGSDESHTGILRRLDTSLGCPRMEVVCKQCEAHLGHVFPDGPKPTGQRFCINS 122

Query: 202 ASLKLKPK 209
            +LK KP 
Sbjct: 123 VALKFKPS 130

>3cxk_A Methionine-R-sulfoxide reductase; structural genomics, MSRB, oxidoreductase, MIC labcard, PSI-2, protein structure initiative; 1.70A {Burkholderia pseudomallei strain} PDB: 3cez_A Length = 164

 Score =  242 bits (620), Expect = 6e-83
 Identities = 67/126 (53%), Positives = 82/126 (65%), Gaps = 3/126 (2%)

Query: 86  SDEEWKRRLTGEQYYITRQKGTERAFTGEYWNTKTPGTYHCICCDTPLFESSTKFDSGTG 145
            D E +RRLT  QY +T+   TE  FTGEY +T+  G YHC+ C T LFES  K+ SG G
Sbjct: 36  DDAELRRRLTPMQYEVTQHAATEPPFTGEYTDTEDAGIYHCVVCGTALFESGAKYHSGCG 95

Query: 146 WPSYYQPI-GSNMKSKLDLSIIFMPRQEVLCAVCDAHLGHVFDDGP-PPTGKRYCINSAS 203
           WPSY++PI G  +  K+D +   M R EV C  C AHLGHVF+DGP   TG RYCINSA+
Sbjct: 96  WPSYFKPIDGEVIDEKMDYT-HGMTRVEVRCNQCGAHLGHVFEDGPRDKTGLRYCINSAA 154

Query: 204 LKLKPK 209
           L  + K
Sbjct: 155 LNFEAK 160

>3hcg_A Peptide methionine sulfoxide reductase MSRA/MSRB; PILB, methionine sulfoxide reductase B, reduced form, disulfide bond; 1.82A {Neisseria meningitidis serogroup A} PDB: 3hch_A* 1l1d_A Length = 146

 Score =  241 bits (618), Expect = 8e-83
 Identities = 62/130 (47%), Positives = 74/130 (56%), Gaps = 3/130 (2%)

Query: 82  YASISDEEWKRRLTGEQYYITRQKGTERAFTGEYWNTKTPGTYHCICCDTPLFESSTKFD 141
           Y   SD E KR LT EQY +T+   TE AF+ EY +   PG Y  +    PLF S+ K+D
Sbjct: 2   YKKPSDAELKRTLTEEQYQVTQNSATEYAFSHEYDHLFKPGIYVDVVSGEPLFSSADKYD 61

Query: 142 SGTGWPSYYQPI-GSNMKSKLDLSIIFMPRQEVLCAVCDAHLGHVFDDGP-PPTGKRYCI 199
           SG GWPS+ +PI   ++    D S   M R EV     D+HLGHVF DGP    G RYCI
Sbjct: 62  SGCGWPSFTRPIDAKSVTEHDDFS-YNMRRTEVRSHAADSHLGHVFPDGPRDKGGLRYCI 120

Query: 200 NSASLKLKPK 209
           N ASLK  P 
Sbjct: 121 NGASLKFIPL 130

>3mao_A Methionine-R-sulfoxide reductase B1; oxidoreductase, structural genomics consortium, SGC, cytoplasm, metal-binding, nucleus, selenocysteine, zinc; HET: MLI; 1.42A {Homo sapiens} Length = 105

 Score =  181 bits (463), Expect = 6e-60
 Identities = 33/101 (32%), Positives = 50/101 (49%), Gaps = 5/101 (4%)

Query: 112 TGE-YWNTKTPGTYHCICCDTPLFESSTKFDSGTGWPSYYQPI-GSNMKSKLDLSIIFMP 169
           + E + N   PG Y C  C   LF S +K+   + WP++ + I   ++  + + +     
Sbjct: 1   SMEVFQNHFEPGVYVCAKCGYELFSSRSKYAHSSPWPAFTETIHADSVAKRPEHN--RSE 58

Query: 170 RQEVLCAVCDAHLGHVF-DDGPPPTGKRYCINSASLKLKPK 209
             +V C  C   LGH F +DGP P   R+ I S+SLK  PK
Sbjct: 59  ALKVSCGKCGNGLGHEFLNDGPKPGQSRFSIFSSSLKFVPK 99

>3e0m_A Peptide methionine sulfoxide reductase MSRA/MSRB 1; fusion, msrab, linker, hinge, cell membrane, membrane, multifunctional enzyme, oxidoreductase; 2.40A {Streptococcus pneumoniae} Length = 313

 Score =  175 bits (446), Expect = 1e-54
 Identities = 57/130 (43%), Positives = 67/130 (51%), Gaps = 3/130 (2%)

Query: 82  YASISDEEWKRRLTGEQYYITRQKGTERAFTGEYWNTKTPGTYHCICCDTPLFESSTKFD 141
           Y   S E  K  L+ E Y +T++  TE  FT  Y  T   G Y  I    PLF +  KF 
Sbjct: 168 YEKPSQEVLKASLSEESYRVTQEAATEAPFTNAYDQTFEEGIYVDITTGEPLFFAKDKFA 227

Query: 142 SGTGWPSYYQPI-GSNMKSKLDLSIIFMPRQEVLCAVCDAHLGHVFDDGP-PPTGKRYCI 199
           SG GWPS+ +P+    +    DLS   M R EV      AHLGHVF DGP    G RYCI
Sbjct: 228 SGCGWPSFSRPLSKELIHYYKDLS-HGMERIEVRSRSGSAHLGHVFTDGPRELGGLRYCI 286

Query: 200 NSASLKLKPK 209
           NSASL+   K
Sbjct: 287 NSASLRFVAK 296

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	209
3e0o_A	144	Peptide methionine sulfoxide reductase MSRB; oxido	100.0
3cxk_A	164	Methionine-R-sulfoxide reductase; structural genom	100.0
2k8d_A	151	Peptide methionine sulfoxide reductase MSRB; therm	100.0
3hcg_A	146	Peptide methionine sulfoxide reductase MSRA/MSRB;	100.0
3hcj_A	154	MSRB, peptide methionine sulfoxide reductase; meth	100.0
2l1u_A	143	MSRB2, methionine-R-sulfoxide reductase B2, mitoch	100.0
3e0m_A	313	Peptide methionine sulfoxide reductase MSRA/MSRB 1	100.0
2kv1_A	124	Methionine-R-sulfoxide reductase B1; MSRB1, SELR,	100.0
3mao_A	105	Methionine-R-sulfoxide reductase B1; oxidoreductas	100.0
2kao_A	124	Methionine-R-sulfoxide reductase B1; mouse reduced	100.0

>3e0o_A Peptide methionine sulfoxide reductase MSRB; oxidoreductase; 2.60A {Bacillus subtilis} SCOP: b.88.1.3 PDB: 1xm0_A 2kzn_A

Probab=100.00  E-value=4.3e-71  Score=451.76  Aligned_cols=125  Identities=49%  Similarity=0.840  Sum_probs=121.6

Q ss_pred             CCCHHHHHhcCCHHHHHHHhhcCCCCCccCCCCCCCCceEEEcccCCccccCCCCcccCCCCCccccccCCCCcEEeecC
Q 028408           84 SISDEEWKRRLTGEQYYITRQKGTERAFTGEYWNTKTPGTYHCICCDTPLFESSTKFDSGTGWPSYYQPIGSNMKSKLDL  163 (209)
Q Consensus        84 ~~s~~ewr~~Ltp~qy~Vlr~~GTE~pFsg~y~~~~~~GiY~C~~Cg~pLF~S~~KFdSg~GWPSF~~pi~~~v~~~~D~  163 (209)
                      .++++|||++|||+||+|||++||||||||+||+++++|+|+|++||+|||+|++|||||||||||++||+++|+++.|.
T Consensus         3 ~~s~~ew~~~Ltp~qy~V~r~~gTE~pftg~y~~~~~~G~Y~C~~Cg~pLF~S~~KfdSg~GWPSF~~pi~~~v~~~~D~   82 (144)
T 3e0o_A            3 AYNKEEKIKSLNRMQYEVTQNNGTEPPFQNEYWDHKEEGLYVDIVSGKPLFTSKDKFDSQCGWPSFTKPIEEEVEEKLDT   82 (144)
T ss_dssp             HHHHHHHHHHSCHHHHHHHHHCCCCCTTCSTTSSCCCSEEEEETTTCCEEEETTTBCCCTTSSCEESCCSTTTEEEEEEC
T ss_pred             CCCHHHHHhhCCHHHHHHHHhcCCCCCCcCCCCCcCCCEEEEeCCCCcccccCcccccCCCCCcccCchhccceEEeecC
Confidence            35799999999999999999999999999999999999999999999999999999999999999999998899999999


Q ss_pred             CCCCCcEEEEEcCCCCCCccccCCCCCCCCCceeeecceeeeeeeC
Q 028408          164 SIIFMPRQEVLCAVCDAHLGHVFDDGPPPTGKRYCINSASLKLKPK  209 (209)
Q Consensus       164 s~~gm~RtEV~C~~Cg~HLGHVF~DGP~Ptg~RYCINS~sL~F~P~  209 (209)
                      ++ ||+||||+|++||+||||||+|||+|||+|||||||||+|+|+
T Consensus        83 s~-gm~RtEV~C~~Cg~HLGHVF~DGP~ptg~RyCiNS~sL~F~p~  127 (144)
T 3e0o_A           83 SH-GMIRTEVRSRTADSHLGHVFNDGPGPNGLRYCINSAALRFVPK  127 (144)
T ss_dssp             CT-TSCEEEEEETTTCCEEEEEESCCSSTTCCEEEECGGGEEEEEH
T ss_pred             CC-CceEEEEEcCCCCCccCCccCCCCCCCCCEeeeceeeEeeeec
Confidence            96 9999999999999999999999999999999999999999984

>3cxk_A Methionine-R-sulfoxide reductase; structural genomics, MSRB, oxidoreductase, MIC labcard, PSI-2, protein structure initiative; 1.70A {Burkholderia pseudomallei strain} PDB: 3cez_A

Probab=100.00  E-value=1.2e-69  Score=450.98  Aligned_cols=130  Identities=51%  Similarity=0.908  Sum_probs=123.3

Q ss_pred             CCCCCCCCHHHHHhcCCHHHHHHHhhcCCCCCccCCCCCCCCceEEEcccCCccccCCCCcccCCCCCccccccCCC-Cc
Q 028408           79 RVDYASISDEEWKRRLTGEQYYITRQKGTERAFTGEYWNTKTPGTYHCICCDTPLFESSTKFDSGTGWPSYYQPIGS-NM  157 (209)
Q Consensus        79 ~~~~~~~s~~ewr~~Ltp~qy~Vlr~~GTE~pFsg~y~~~~~~GiY~C~~Cg~pLF~S~~KFdSg~GWPSF~~pi~~-~v  157 (209)
                      +...+.++++|||++|||+||+|||++||||||+|+||+++++|+|+|++||+|||+|++|||||||||||++||++ +|
T Consensus        29 ~~~~~~~s~~ewr~~Ltp~qy~V~r~~GTErpftg~y~~~~~~GiY~C~~Cg~pLF~S~~KFdSGcGWPSF~~pi~~~~V  108 (164)
T 3cxk_A           29 PRYPYPKDDAELRRRLTPMQYEVTQHAATEPPFTGEYTDTEDAGIYHCVVCGTALFESGAKYHSGCGWPSYFKPIDGEVI  108 (164)
T ss_dssp             --CCSCCCHHHHHHHSCHHHHHHHHHCCCCCTTCSTTTTCCCSEEEEETTTCCEEEEGGGBCCCCSSSCEESSCSSTTSE
T ss_pred             cccccCCCHHHHHhhCCHHHHHHHHhcCCCCCCcccccccCCCeEEEccCCCccccCCchhccCCCCCcccCcccCCCce
Confidence            33456799999999999999999999999999999999999999999999999999999999999999999999975 78


Q ss_pred             EEeecCCCCCCcEEEEEcCCCCCCccccCCCCC-CCCCceeeecceeeeeeeC
Q 028408          158 KSKLDLSIIFMPRQEVLCAVCDAHLGHVFDDGP-PPTGKRYCINSASLKLKPK  209 (209)
Q Consensus       158 ~~~~D~s~~gm~RtEV~C~~Cg~HLGHVF~DGP-~Ptg~RYCINS~sL~F~P~  209 (209)
                      .++.|.++ ||+||||+|++||+||||||+||| +|||+|||||||||+|+|+
T Consensus       109 ~~~~D~s~-gm~RtEV~C~~Cg~HLGHVF~DGP~~ptg~RyCINS~sL~F~p~  160 (164)
T 3cxk_A          109 DEKMDYTH-GMTRVEVRCNQCGAHLGHVFEDGPRDKTGLRYCINSAALNFEAK  160 (164)
T ss_dssp             EEEEECGG-GCCEEEEEETTTCCEEEEEESCSCTTTTSCEEEECGGGEEEEEC
T ss_pred             EEeECCCC-CcEEEEEEeCCCCCccCcccCCCCCCCCCCEEeeceeeEeeecc
Confidence            89999986 999999999999999999999999 9999999999999999985

>2k8d_A Peptide methionine sulfoxide reductase MSRB; thermophilic, Zn binding, metal-binding, oxidoreductase; NMR {Methanothermobacter thermautotrophicusorganism_taxid}

Probab=100.00  E-value=2e-70  Score=450.71  Aligned_cols=127  Identities=57%  Similarity=1.087  Sum_probs=122.8

Q ss_pred             CCCCCHHHHHhcCCHHHHHHHhhcCCCCCccCCCCCCCCceEEEcccCCccccCCCCcccCCCCCccccccCC-CCcEEe
Q 028408           82 YASISDEEWKRRLTGEQYYITRQKGTERAFTGEYWNTKTPGTYHCICCDTPLFESSTKFDSGTGWPSYYQPIG-SNMKSK  160 (209)
Q Consensus        82 ~~~~s~~ewr~~Ltp~qy~Vlr~~GTE~pFsg~y~~~~~~GiY~C~~Cg~pLF~S~~KFdSg~GWPSF~~pi~-~~v~~~  160 (209)
                      .+.++++|||++|||+||+|||++||||||+|+||+++++|+|+|++||+|||+|++|||||||||||++||+ ++|.++
T Consensus        20 ~~~~s~~ewr~~Ltp~qy~V~r~~gTE~pftg~y~~~~~~G~Y~C~~Cg~pLF~S~~KFdSg~GWPSF~~pi~~~~V~~~   99 (151)
T 2k8d_A           20 RIELSDDEWREILDPEAFRVARKAGTEPPFTGKYHDLHDDGIYRCICCGTDLFDSETKFDSGTGWPSFYDVVSEHNIKLR   99 (151)
T ss_dssp             CSCCCTTGGGTTSCTTHHHHHHHTTCSSSCSCCCCCCCSCSEEEETTTTEEEEEGGGSCCSTTCCSEESCCSCTTSEECC
T ss_pred             ccCCCHHHHHhhCCHHHHHHHHhcCCCCCCccCCcCCCCCEEEEecCCCCcccCCcccccCCCCCcccCcccCCCceEEe
Confidence            3578999999999999999999999999999999999999999999999999999999999999999999997 489999


Q ss_pred             ecCCCCCCcEEEEEcCCCCCCccccCCCCCCCCCceeeecceeeeeeeC
Q 028408          161 LDLSIIFMPRQEVLCAVCDAHLGHVFDDGPPPTGKRYCINSASLKLKPK  209 (209)
Q Consensus       161 ~D~s~~gm~RtEV~C~~Cg~HLGHVF~DGP~Ptg~RYCINS~sL~F~P~  209 (209)
                      .|.++ ||.||||+|++||+||||||+|||+|||+|||||||||+|+|+
T Consensus       100 ~D~s~-gm~RtEV~C~~Cg~HLGHVF~DGP~ptg~RyCINS~sL~F~p~  147 (151)
T 2k8d_A          100 EDRSL-GMVRCEVLCARCDAHLGHVFDDGPRPTGKRYCMNSAALKFIPR  147 (151)
T ss_dssp             CCBTT-SSCEEEEEETTEEEEEEEEEECSSSSSCEEEEECSTTEEEECS
T ss_pred             eCCCC-CceEEEEEeCCCCCcCCcccCCCCCCCCCEEeeceeeecccch
Confidence            99996 9999999999999999999999999999999999999999985

>3hcg_A Peptide methionine sulfoxide reductase MSRA/MSRB; PILB, methionine sulfoxide reductase B, reduced form, disulfide bond; 1.82A {Neisseria meningitidis serogroup A} SCOP: b.88.1.3 PDB: 3hch_A* 1l1d_A

Probab=100.00  E-value=3.6e-70  Score=447.24  Aligned_cols=127  Identities=49%  Similarity=0.790  Sum_probs=121.7

Q ss_pred             CCCCCHHHHHhcCCHHHHHHHhhcCCCCCccCCCCCCCCceEEEcccCCccccCCCCcccCCCCCccccccCC-CCcEEe
Q 028408           82 YASISDEEWKRRLTGEQYYITRQKGTERAFTGEYWNTKTPGTYHCICCDTPLFESSTKFDSGTGWPSYYQPIG-SNMKSK  160 (209)
Q Consensus        82 ~~~~s~~ewr~~Ltp~qy~Vlr~~GTE~pFsg~y~~~~~~GiY~C~~Cg~pLF~S~~KFdSg~GWPSF~~pi~-~~v~~~  160 (209)
                      +..++|+|||++|||+||+|||++||||||||+||+++++|+|+|++||+|||+|++|||||||||||++||+ ++|.++
T Consensus         2 ~~~~s~~ewr~~Ltp~qy~V~r~~gTE~pftg~y~~~~~~G~Y~C~~Cg~pLF~S~~KFdSg~GWPSF~~pi~~~~v~~~   81 (146)
T 3hcg_A            2 YKKPSDAELKRTLTEEQYQVTQNSATEYAFSHEYDHLFKPGIYVDVVSGEPLFSSADKYDSGCGWPSFTRPIDAKSVTEH   81 (146)
T ss_dssp             CCCCCHHHHHHHSBHHHHHHHHHCCCCCTTCSGGGGCCCSEEEEETTTCCEEEEGGGEECCSSSSCEESSCSSGGGEEEE
T ss_pred             CCCCCHHHHHhhCCHHHHHHHHHcCCCCCCCCCCcCCCCCEEEEecCCCcccccCcccccCCCCChhhccccCCCceEEe
Confidence            3468999999999999999999999999999999999999999999999999999999999999999999996 678899


Q ss_pred             ecCCCCCCcEEEEEcCCCCCCccccCCCCCC-CCCceeeecceeeeeeeC
Q 028408          161 LDLSIIFMPRQEVLCAVCDAHLGHVFDDGPP-PTGKRYCINSASLKLKPK  209 (209)
Q Consensus       161 ~D~s~~gm~RtEV~C~~Cg~HLGHVF~DGP~-Ptg~RYCINS~sL~F~P~  209 (209)
                      .|.++ ||+||||+|++||+||||||+|||+ |||+|||||||||+|+|+
T Consensus        82 ~D~s~-gm~RtEV~C~~Cg~HLGHVF~DGP~~~tg~RyCiNS~sL~F~p~  130 (146)
T 3hcg_A           82 DDFSY-NMRRTEVRSHAADSHLGHVFPDGPRDKGGLRYCINGASLKFIPL  130 (146)
T ss_dssp             EEEET-TEEEEEEEETTTCCEEEEEESCSCGGGTSCEEEECGGGEEEEEH
T ss_pred             ecCCC-CcEEEEEEeCCCCCccCceeCCCCCCCCCCEEeeeeEEEEeeeh
Confidence            99996 9999999999999999999999997 599999999999999984

>3hcj_A MSRB, peptide methionine sulfoxide reductase; methionine sulfoxide reductase B, oxidized form, oxidoreductase; 1.66A {Xanthomonas campestris PV} PDB: 3hci_A*

Probab=100.00  E-value=7.1e-69  Score=442.61  Aligned_cols=122  Identities=45%  Similarity=0.877  Sum_probs=118.5

Q ss_pred             HHHHHhcCCHHHHHHHhhcCCCCCccCCCCCCCCceEEEcccCCccccCCCCcccCCCCCccccccCC-CCcEEeecCCC
Q 028408           87 DEEWKRRLTGEQYYITRQKGTERAFTGEYWNTKTPGTYHCICCDTPLFESSTKFDSGTGWPSYYQPIG-SNMKSKLDLSI  165 (209)
Q Consensus        87 ~~ewr~~Ltp~qy~Vlr~~GTE~pFsg~y~~~~~~GiY~C~~Cg~pLF~S~~KFdSg~GWPSF~~pi~-~~v~~~~D~s~  165 (209)
                      .+|||++|||+||+|||++|||+||+|+||+++++|+|+|++||+|||+|++|||||||||||++||+ ++|.++.|.++
T Consensus        14 ~~e~~~~Ltp~qy~V~r~~gTE~pftg~y~~~~~~G~Y~C~~Cg~pLF~S~~KFdSg~GWPSF~~pi~~~~v~~~~D~s~   93 (154)
T 3hcj_A           14 RDALIAGLSDEEQRVLLHHGTEAPFCGVFLDNKLDGVYTCRLCGLPLFRSNAKFDSGTGWPSFFAPYDPAHVREIRDTSY   93 (154)
T ss_dssp             HHHHHHTSCHHHHHHHSCCSSSCCCCCCCCSSCSSEEEEETTTCCEEEEECTTCCCCTTSSTTEEESCGGGEEEECCTTT
T ss_pred             HHHHHhhCCHHHHHHHHhcCCCCCCcCCCCCCCCCEEEEccCCCCccccCcccccCCCCCcccccccCccceEEeecCCC
Confidence            56999999999999999999999999999999999999999999999999999999999999999997 67999999996


Q ss_pred             CCCcEEEEEcCCCCCCccccCCCCCCCCCceeeecceeeeeeeC
Q 028408          166 IFMPRQEVLCAVCDAHLGHVFDDGPPPTGKRYCINSASLKLKPK  209 (209)
Q Consensus       166 ~gm~RtEV~C~~Cg~HLGHVF~DGP~Ptg~RYCINS~sL~F~P~  209 (209)
                       ||.||||+|++||+||||||+|||+|||+|||||||||+|+|+
T Consensus        94 -gm~RtEV~C~~Cg~HLGHVF~DGP~ptg~RyCiNS~sL~F~p~  136 (154)
T 3hcj_A           94 -GMIRTEIVCARCDSHLGHVFPDGPPPTGERHCLNSVSLAFTED  136 (154)
T ss_dssp             -TTSCEEEEETTTCCEEEEEESCSCTTTTCEEEECGGGEEEEET
T ss_pred             -CceEEEEEeCCCCCccCCccCCCCCCCCCEeeeceeeEEeeeC
Confidence             9999999999999999999999999999999999999999985

>2l1u_A MSRB2, methionine-R-sulfoxide reductase B2, mitochondria; methionine sulfoxide reductase, oxidoreductase; NMR {Mus musculus}

Probab=100.00  E-value=1.5e-69  Score=442.33  Aligned_cols=122  Identities=55%  Similarity=1.130  Sum_probs=118.5

Q ss_pred             HHHHHhcCCHHHHHHHhhcCCCCCccCCCCCCCCceEEEcccCCccccCCCCcccCCCCCccccccC--------CCCcE
Q 028408           87 DEEWKRRLTGEQYYITRQKGTERAFTGEYWNTKTPGTYHCICCDTPLFESSTKFDSGTGWPSYYQPI--------GSNMK  158 (209)
Q Consensus        87 ~~ewr~~Ltp~qy~Vlr~~GTE~pFsg~y~~~~~~GiY~C~~Cg~pLF~S~~KFdSg~GWPSF~~pi--------~~~v~  158 (209)
                      ++|||++|||+||+|||++||||||||+||+++++|+|+|++||+|||+|++|||||||||||++||        +++|+
T Consensus         1 ~~ewr~~Ltp~qy~V~r~~gTE~pftg~y~~~~~~G~Y~C~~Cg~pLF~S~~KFdSg~GWPSF~~pi~~~~~~~~~~~V~   80 (143)
T 2l1u_A            1 MADWQKKLTPEQFYVTREKGTEAPFSGMYLNNKETGMYHCVCCDSPLFSSEKKYCSGTGWPSFSEAYGSKGSDESHTGIL   80 (143)
T ss_dssp             CCCSHHHHSCSHHHHHHHTTCCCSCCGGGSSCCCCEEEEESSSSCEEEEGGGBCTTTTCCSBBSSCCSCCTTHHHHTCEE
T ss_pred             ChHHHhhCCHHHHHHHHhcCCCCCCcCCCcCCcCCeEEEeCCCCCeeecCcccccCCCCChhhchhhccccccCCCCceE
Confidence            3689999999999999999999999999999999999999999999999999999999999999999        67899


Q ss_pred             EeecCCCCCCcEEEEEcCCCCCCccccCCCCCCCCCceeeecceeeeeeeC
Q 028408          159 SKLDLSIIFMPRQEVLCAVCDAHLGHVFDDGPPPTGKRYCINSASLKLKPK  209 (209)
Q Consensus       159 ~~~D~s~~gm~RtEV~C~~Cg~HLGHVF~DGP~Ptg~RYCINS~sL~F~P~  209 (209)
                      .+.|.++ ||+||||+|++||+||||||+|||+|||+|||||||||+|+|+
T Consensus        81 ~~~D~s~-gm~RtEV~C~~Cg~HLGHVF~DGP~ptg~RyCINS~sL~F~p~  130 (143)
T 2l1u_A           81 RRLDTSL-GCPRMEVVCKQCEAHLGHVFPDGPKPTGQRFCINSVALKFKPS  130 (143)
T ss_dssp             EEEECTT-SSCEEEEEESSSCCCCEEEECCSSCGGGCEEEECCTTEEEEES
T ss_pred             EeecccC-CceEEEEEECCCCCcCCcccCCCCCCCCCEEEeeeeEEeccch
Confidence            9999996 9999999999999999999999999999999999999999985

>3e0m_A Peptide methionine sulfoxide reductase MSRA/MSRB 1; fusion, msrab, linker, hinge, cell membrane, membrane, multifunctional enzyme, oxidoreductase; 2.40A {Streptococcus pneumoniae}

Probab=100.00  E-value=4e-64  Score=452.01  Aligned_cols=128  Identities=45%  Similarity=0.669  Sum_probs=123.2

Q ss_pred             CCCCCCHHHHHhcCCHHHHHHHhhcCCCCCccCCCCCCCCceEEEcccCCccccCCCCcccCCCCCccccccCC-CCcEE
Q 028408           81 DYASISDEEWKRRLTGEQYYITRQKGTERAFTGEYWNTKTPGTYHCICCDTPLFESSTKFDSGTGWPSYYQPIG-SNMKS  159 (209)
Q Consensus        81 ~~~~~s~~ewr~~Ltp~qy~Vlr~~GTE~pFsg~y~~~~~~GiY~C~~Cg~pLF~S~~KFdSg~GWPSF~~pi~-~~v~~  159 (209)
                      .+..++++|||++|||+||+|||++||||||||+||+++++|+|+|++||+|||+|++|||||||||||++||+ ++|.+
T Consensus       167 ~Y~~~~~~ew~~~Lt~~qy~V~r~~gTE~pftg~y~~~~~~G~Y~c~~cg~pLF~S~~KfdSg~GWPSF~~~i~~~~v~~  246 (313)
T 3e0m_A          167 NYEKPSQEVLKASLSEESYRVTQEAATEAPFTNAYDQTFEEGIYVDITTGEPLFFAKDKFASGCGWPSFSRPLSKELIHY  246 (313)
T ss_dssp             GGCCCCHHHHHHHSCHHHHHHHHHCCCCCSSSSTTTTCCCSEEEEETTTCCEEEEGGGBCCCCSSSCEESSCSSGGGEEE
T ss_pred             ccccCCHHHHHhcCCHHHHHHHHhcCCCCCCCCCCCCCCCCeEEEecCCCccccCCCccccCCCCCcccCcccCCCceEE
Confidence            35678999999999999999999999999999999999999999999999999999999999999999999996 68999


Q ss_pred             eecCCCCCCcEEEEEcCCCCCCccccCCCCC-CCCCceeeecceeeeeeeC
Q 028408          160 KLDLSIIFMPRQEVLCAVCDAHLGHVFDDGP-PPTGKRYCINSASLKLKPK  209 (209)
Q Consensus       160 ~~D~s~~gm~RtEV~C~~Cg~HLGHVF~DGP-~Ptg~RYCINS~sL~F~P~  209 (209)
                      +.|.++ ||.||||+|++||+||||||+||| +|||+||||||+||+|+|+
T Consensus       247 ~~D~s~-gm~RtEv~c~~c~~HLGHVF~DGp~~ptg~RyCiNs~sL~F~p~  296 (313)
T 3e0m_A          247 YKDLSH-GMERIEVRSRSGSAHLGHVFTDGPRELGGLRYCINSASLRFVAK  296 (313)
T ss_dssp             EEECCT-TCCEEEEEESSSCCEEEEEESCSCTTTTSCEEEECGGGEEEEEH
T ss_pred             eecCCC-CcEEEEEECCCCCCccCcccCCCCCCCCCCEEeeceeeEeeecc
Confidence            999996 999999999999999999999999 7999999999999999984

>2kv1_A Methionine-R-sulfoxide reductase B1; MSRB1, SELR, metal-binding, nucleus, oxidoreductase, seleniu; NMR {Mus musculus}

Probab=100.00  E-value=2.2e-54  Score=345.79  Aligned_cols=99  Identities=35%  Similarity=0.694  Sum_probs=91.2

Q ss_pred             CCccCC-CCCCCCceEEEcccCCccccCCCCcccCCCCCccccccCCC-CcEEeecCCCCCCcEEEEEcCCCCCCccccC
Q 028408          109 RAFTGE-YWNTKTPGTYHCICCDTPLFESSTKFDSGTGWPSYYQPIGS-NMKSKLDLSIIFMPRQEVLCAVCDAHLGHVF  186 (209)
Q Consensus       109 ~pFsg~-y~~~~~~GiY~C~~Cg~pLF~S~~KFdSg~GWPSF~~pi~~-~v~~~~D~s~~gm~RtEV~C~~Cg~HLGHVF  186 (209)
                      .+|+|+ |||++++|+|+|++||+|||+|++|||||||||||++||++ +|....|.+  +|.||||+|++||+||||||
T Consensus         5 ~~F~ge~y~~~~e~G~Y~C~~Cg~pLF~S~~KfdSg~GWPSF~~~i~~~~v~~~~d~~--~~~r~Ev~C~~Cg~HLGHVF   82 (124)
T 2kv1_A            5 SFFGGEVFQNHFEPGVYVCAKCSYELFSSHSKYAHSSPWPAFTETIHPDSVTKCPEKN--RPEALKVSCGKCGNGLGHEF   82 (124)
T ss_dssp             CCCCSCSGGGTTCCEEEEETTTCCBCCCTTSCCCCCSSSCCBSCCCCCSSCEEEECSS--STTCEEEECTTTTCCCEEEC
T ss_pred             cCccCccccCCCCCEEEEecCCCCcccccCCcccCCCCCceeecccccceEEEEeccC--CceEEEEEEecCCCccCCcc
Confidence            379999 78889999999999999999999999999999999999974 566566654  68899999999999999999


Q ss_pred             -CCCCCCCCceeeecceeeeeeeC
Q 028408          187 -DDGPPPTGKRYCINSASLKLKPK  209 (209)
Q Consensus       187 -~DGP~Ptg~RYCINS~sL~F~P~  209 (209)
                       +|||+|||+|||||||||+|+|+
T Consensus        83 ~~DGP~ptg~RyCINS~sL~F~p~  106 (124)
T 2kv1_A           83 LNDGPKRGQSRFCIFSSSLKFVPK  106 (124)
T ss_dssp             TTSCTTTTCSCEECCTTTEEEEEC
T ss_pred             CCCCCCCCCCEEeecceeeEeEEC
Confidence             89999999999999999999995

>3mao_A Methionine-R-sulfoxide reductase B1; oxidoreductase, structural genomics consortium, SGC, cytoplasm, metal-binding, nucleus, selenocysteine, zinc; HET: MLI; 1.42A {Homo sapiens}

Probab=100.00  E-value=9.8e-54  Score=333.89  Aligned_cols=94  Identities=34%  Similarity=0.687  Sum_probs=89.3

Q ss_pred             CCCCCCCceEEEcccCCccccCCCCcccCCCCCccccccCC-CCcEEeecCCCCCCcEEEEEcCCCCCCccccC-CCCCC
Q 028408          114 EYWNTKTPGTYHCICCDTPLFESSTKFDSGTGWPSYYQPIG-SNMKSKLDLSIIFMPRQEVLCAVCDAHLGHVF-DDGPP  191 (209)
Q Consensus       114 ~y~~~~~~GiY~C~~Cg~pLF~S~~KFdSg~GWPSF~~pi~-~~v~~~~D~s~~gm~RtEV~C~~Cg~HLGHVF-~DGP~  191 (209)
                      +||+++++|+|+|++||+|||+|++|||||||||||++||+ ++|+++.|.+  +|.||||+|++||+|||||| +|||+
T Consensus         4 ~y~~~~~~G~Y~C~~Cg~pLF~S~~KFdSg~GWPSF~~pi~~~~v~~~~D~~--~~~RtEV~C~~C~~HLGHVF~~DGP~   81 (105)
T 3mao_A            4 VFQNHFEPGVYVCAKCGYELFSSRSKYAHSSPWPAFTETIHADSVAKRPEHN--RSEALKVSCGKCGNGLGHEFLNDGPK   81 (105)
T ss_dssp             CCTTCCCSEEEEETTTCCEEEEGGGEECCSSSSCEESCCSSTTSEEEEECTT--STTEEEEEETTTCCEEEEEETTCSSS
T ss_pred             cccCCCCCEEEEcCCCCCccccCCcccCCCCCChhhccccCCCceEEEecCC--CCCEEEEEeCCCCCccCcccCCCCcC
Confidence            69999999999999999999999999999999999999997 6788888865  58999999999999999999 79999


Q ss_pred             CCCceeeecceeeeeeeC
Q 028408          192 PTGKRYCINSASLKLKPK  209 (209)
Q Consensus       192 Ptg~RYCINS~sL~F~P~  209 (209)
                      |||+|||||||||+|+|+
T Consensus        82 ptg~RyCiNS~sL~F~p~   99 (105)
T 3mao_A           82 PGQSRFSIFSSSLKFVPK   99 (105)
T ss_dssp             TTCCEEEECGGGEEEEET
T ss_pred             CCCCEEeeCeeeEEeeec
Confidence            999999999999999995

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	209
d1xm0a1	143	b.88.1.3 (A:1-143) Peptide methionine sulfoxide re	8e-58
d1l1da_	144	b.88.1.3 (A:) C-terminal MsrB domain of peptide me	4e-53

>d1xm0a1 b.88.1.3 (A:1-143) Peptide methionine sulfoxide reductase MsrB {Bacillus subtilis [TaxId: 1423]} Length = 143

class: All beta proteins
fold: Mss4-like
superfamily: Mss4-like
family: SelR domain
domain: Peptide methionine sulfoxide reductase MsrB
species: Bacillus subtilis [TaxId: 1423]

 Score =  177 bits (449), Expect = 8e-58
 Identities = 61/126 (48%), Positives = 75/126 (59%), Gaps = 1/126 (0%)

Query: 84  SISDEEWKRRLTGEQYYITRQKGTERAFTGEYWNTKTPGTYHCICCDTPLFESSTKFDSG 143
           + + EE  + L   QY +T+  GTE  F  EYW+ K  G Y  I    PLF S  KFDS 
Sbjct: 2   AYNKEEKIKSLNRMQYEVTQNNGTEPPFQNEYWDHKEEGLYVDIVSGKPLFTSKDKFDSQ 61

Query: 144 TGWPSYYQPIGSNMKSKLDLSIIFMPRQEVLCAVCDAHLGHVFDDGPPPTGKRYCINSAS 203
            GWPS+ +PI   ++ KLD S   M R EV     D+HLGHVF+DGP P G RYCINSA+
Sbjct: 62  CGWPSFTKPIEEEVEEKLDTS-HGMIRTEVRSRTADSHLGHVFNDGPGPNGLRYCINSAA 120

Query: 204 LKLKPK 209
           L+  PK
Sbjct: 121 LRFVPK 126

>d1l1da_ b.88.1.3 (A:) C-terminal MsrB domain of peptide methionine sulfoxide reductase PilB {Neisseria gonorrhoeae [TaxId: 485]} Length = 144

class: All beta proteins
fold: Mss4-like
superfamily: Mss4-like
family: SelR domain
domain: C-terminal MsrB domain of peptide methionine sulfoxide reductase PilB
species: Neisseria gonorrhoeae [TaxId: 485]

 Score =  165 bits (418), Expect = 4e-53
 Identities = 61/129 (47%), Positives = 74/129 (57%), Gaps = 1/129 (0%)

Query: 82  YASISDEEWKRRLTGEQYYITRQKGTERAFTGEYWNTKTPGTYHCICCDTPLFESSTKFD 141
           Y   SD E KR LT EQY +T+   TE AF+ EY +   PG Y  +    PLF S+ K+D
Sbjct: 1   YKKPSDAELKRTLTEEQYQVTQNSATEYAFSHEYDHLFKPGIYVDVVSGEPLFSSADKYD 60

Query: 142 SGTGWPSYYQPIGSNMKSKLDLSIIFMPRQEVLCAVCDAHLGHVFDDGP-PPTGKRYCIN 200
           SG GWPS+ +PI +   ++ D     M R EV     D+HLGHVF DGP    G RYCIN
Sbjct: 61  SGCGWPSFTRPIDAKSVTEHDDFSFNMRRTEVRSRAADSHLGHVFPDGPRDKGGLRYCIN 120

Query: 201 SASLKLKPK 209
            ASLK  P 
Sbjct: 121 GASLKFIPL 129

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	209
d1xm0a1	143	Peptide methionine sulfoxide reductase MsrB {Bacil	100.0
d1l1da_	144	C-terminal MsrB domain of peptide methionine sulfo	100.0

>d1xm0a1 b.88.1.3 (A:1-143) Peptide methionine sulfoxide reductase MsrB {Bacillus subtilis [TaxId: 1423]}

class: All beta proteins
fold: Mss4-like
superfamily: Mss4-like
family: SelR domain
domain: Peptide methionine sulfoxide reductase MsrB
species: Bacillus subtilis [TaxId: 1423]

Probab=100.00  E-value=2.9e-68  Score=432.72  Aligned_cols=125  Identities=49%  Similarity=0.840  Sum_probs=122.0

Q ss_pred             CCCHHHHHhcCCHHHHHHHhhcCCCCCccCCCCCCCCceEEEcccCCccccCCCCcccCCCCCccccccCCCCcEEeecC
Q 028408           84 SISDEEWKRRLTGEQYYITRQKGTERAFTGEYWNTKTPGTYHCICCDTPLFESSTKFDSGTGWPSYYQPIGSNMKSKLDL  163 (209)
Q Consensus        84 ~~s~~ewr~~Ltp~qy~Vlr~~GTE~pFsg~y~~~~~~GiY~C~~Cg~pLF~S~~KFdSg~GWPSF~~pi~~~v~~~~D~  163 (209)
                      .++++||+++|||+||+|||++||||||||+||+++++|+|+|++||+|||+|++|||||||||||+++|+++|..+.|.
T Consensus         2 ~~~~~e~~~~Lt~~qy~V~r~~gTE~pFtg~y~~~~~~G~Y~C~~C~~pLF~S~~KfdSg~GWPSF~~~i~~~v~~~~D~   81 (143)
T d1xm0a1           2 AYNKEEKIKSLNRMQYEVTQNNGTEPPFQNEYWDHKEEGLYVDIVSGKPLFTSKDKFDSQCGWPSFTKPIEEEVEEKLDT   81 (143)
T ss_dssp             CCCHHHHHTTCCHHHHHHHHHCCCCCCCSCSSCSCCSSEEEEESSTTCEEEETTTCCCCCSSSCCEEESCCCSEEEECCC
T ss_pred             CCCHHHHHhhCCHHHHHHHHhcCCCCCCCCCCcCCCCCceEEeccccchhhhhhhhhccCCccceeecccccceEEEecC
Confidence            47899999999999999999999999999999999999999999999999999999999999999999999999989999


Q ss_pred             CCCCCcEEEEEcCCCCCCccccCCCCCCCCCceeeecceeeeeeeC
Q 028408          164 SIIFMPRQEVLCAVCDAHLGHVFDDGPPPTGKRYCINSASLKLKPK  209 (209)
Q Consensus       164 s~~gm~RtEV~C~~Cg~HLGHVF~DGP~Ptg~RYCINS~sL~F~P~  209 (209)
                      ++ ||.||||+|++||+||||||+|||+|||+||||||+||+|+|+
T Consensus        82 s~-gm~R~Ev~C~~Cg~HLGHVF~DGp~ptg~RyCINs~sL~F~p~  126 (143)
T d1xm0a1          82 SH-GMIRTEVRSRTADSHLGHVFNDGPGPNGLRYCINSAALRFVPK  126 (143)
T ss_dssp             CT-TCCCCEEEESSCTTCCCEEEESCSSSSCEEEECCGGGEEEEET
T ss_pred             CC-CccccceEecCCCCccCccCCCCCCCCCcEeeeeeeeEEEEeh
Confidence            96 9999999999999999999999999999999999999999995

>d1l1da_ b.88.1.3 (A:) C-terminal MsrB domain of peptide methionine sulfoxide reductase PilB {Neisseria gonorrhoeae [TaxId: 485]}

class: All beta proteins
fold: Mss4-like
superfamily: Mss4-like
family: SelR domain
domain: C-terminal MsrB domain of peptide methionine sulfoxide reductase PilB
species: Neisseria gonorrhoeae [TaxId: 485]

Probab=100.00  E-value=2.4e-67  Score=427.65  Aligned_cols=127  Identities=49%  Similarity=0.797  Sum_probs=120.0

Q ss_pred             CCCCCHHHHHhcCCHHHHHHHhhcCCCCCccCCCCCCCCceEEEcccCCccccCCCCcccCCCCCccccccCCCC-cEEe
Q 028408           82 YASISDEEWKRRLTGEQYYITRQKGTERAFTGEYWNTKTPGTYHCICCDTPLFESSTKFDSGTGWPSYYQPIGSN-MKSK  160 (209)
Q Consensus        82 ~~~~s~~ewr~~Ltp~qy~Vlr~~GTE~pFsg~y~~~~~~GiY~C~~Cg~pLF~S~~KFdSg~GWPSF~~pi~~~-v~~~  160 (209)
                      |.++||+|||++|||+||+|||++|||+||||+||+++++|+|+|++||+|||+|++|||||||||||+++|+++ |..+
T Consensus         1 y~k~s~~ewk~~Ls~~~y~Vlr~~GTE~pfsg~y~~~~~~G~Y~C~~Cg~pLF~S~~KfdSg~GWPSF~~~i~~~~v~~~   80 (144)
T d1l1da_           1 YKKPSDAELKRTLTEEQYQVTQNSATEYAFSHEYDHLFKPGIYVDVVSGEPLFSSADKYDSGCGWPSFTRPIDAKSVTEH   80 (144)
T ss_dssp             CCCCCHHHHTTTSCHHHHHHHHHCCCCCTTCSGGGGCCCSEEEEETTTCCEEEEGGGEECCSSSSCEESSCSSTTSEEEE
T ss_pred             CCCCCHHHHHHhCCHHHHHHHHhcCCCCCCCcccccccccCceEeccccceeeehhhcccCCccceeeccccccccccce
Confidence            457899999999999999999999999999999999999999999999999999999999999999999999865 5667


Q ss_pred             ecCCCCCCcEEEEEcCCCCCCccccCCCCCCC-CCceeeecceeeeeeeC
Q 028408          161 LDLSIIFMPRQEVLCAVCDAHLGHVFDDGPPP-TGKRYCINSASLKLKPK  209 (209)
Q Consensus       161 ~D~s~~gm~RtEV~C~~Cg~HLGHVF~DGP~P-tg~RYCINS~sL~F~P~  209 (209)
                      .|.++ ||.||||+|++||+||||||+|||.| +|+||||||+||+|+|+
T Consensus        81 ~d~s~-gm~R~Ev~C~~Cg~HLGHVF~DGp~~~~~~RyCiNs~sL~F~p~  129 (144)
T d1l1da_          81 DDFSF-NMRRTEVRSRAADSHLGHVFPDGPRDKGGLRYCINGASLKFIPL  129 (144)
T ss_dssp             EECCT-TSCEEEEEETTTCCEEEEEESCSCGGGTSCEEEECGGGEEEEEH
T ss_pred             ecccc-cccceeeEecCCCCccCcccCCCCCCCCCCEeccceeeEEEEeH
Confidence            88886 99999999999999999999999965 68999999999999984