Citrus Sinensis ID: 028413

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------21
Protein Sequence
MGPDHPHYLQSFELGGEIARLLDCTTWSGAGPGLMDAVTKGAMQAGKPVGGFKVGKEAGEWTASNFHPYLPLETYLTCRFFSARKHGLIDCAVRNDSCDRTAVVALPGGVGTLDEMFEILALIQLERIGSELPVPFLVMNYDSFYKKLLDFLGDCEDWGTVAKDEVASLWKICDSNSEALSYLAEFYDLSSIDKRVHEVNLKSTHGIVS
Secondary Structure (PSIPRED)
cccccHHHHHHHHHHHHHHHccccEEEEcccccHHHHHHHHHHHccccEEEEEEccccccccccccccccccccEEEEcccHHHHHHHHHHHHccccccccEEEEccccccHHHHHHHHHHHHHHccccccccccEEEEcccccHHHHHHHHHHHHHcccccHHHccccEEEEccHHHHHHHHHHHHcccccccccccHHccccccccc
Secondary Structure Prediction (SSPRO)
cccccHHHHHHHHHHHHHHHccccEEEEccccHHHHHHHcccHHcccccccEEEccccccccccccccccccccEEEEEEEEEEEEEEEEEEcccccccccEEEEEccccccHHHHHHHHHHHHHccccccccccEEEEccHHHHHHHHHHHHHHHHHcccccHHHccEEEEEccHHHHHHHHHHHHHcccccccHHHHHHHHcccccc
Coil and Loop (DISEMBL)
mgpdhphylqsfELGGEIARLLdcttwsgagpglmDAVTKGAmqagkpvggfkvgkeagewtasnfhpylpletylTCRFfsarkhglidcavrndscdrtavvalpggvgtLDEMFEILALIQLErigselpvpflVMNYDSFYKKLLDFLgdcedwgtVAKDEVASLWKICDSNSEALSYLAEFydlssidkrVHEVNLKSTHGIVS
Flexible Loop (DISEMBL)
MGPDHPHYLQSFELGGEIARLLDCTTWSGAGPGLMDAVTKGAMQAGKPVGGFKVGKEAGEWTASNFHPYLPLETYLTCRFFSARKHGLIDCAVRNDSCDRTAVVALPGGVGTLDEMFEILALIQLERIGSELPVPFLVMNYDSFYKKLLDFLGDCEDWGTVAKDEVASLWKICDSNSEALSYLAEFYDLSSIDKRVHEVNLKSTHGIVS
Low Complexity Region (SEG)
MGPDHPHYLQSFELGGEIARLLDCTTWSGAGPGLMDAVTKGAMQAGKPVGGFKVGKEAGEWTASNFHPYLPLETYLTCRFFSARKHGLIDCAVRNDSCDRTAVVALPGGVGTLDEMFEILALIQLERIGSELPVPFLVMNYDSFYKKLLDFLGDCEDWGTVAKDEVASLWKICDSNSEALSYLAEFYDLSSIDKRVHEVNLKSTHGIVS
Disordered region (IsUnstruct)
*******YLQSFELGGEIARLLDCTTWSGAGPGLMDAVTKGAMQAGKPVGGFKVGKEAGEWTASNFHPYLPLETYLTCRFFSARKHGLIDCAVRNDSCDRTAVVALPGGVGTLDEMFEILALIQLERIGSELPVPFLVMNYDSFYKKLLDFLGDCEDWGTVAKDEVASLWKICDSNSEALSYLAEFYDLSSIDKRVHEV**********
Disordered Region (DISOPRED)
***DHPHYLQSFELGGEIARLLDCTTWSGAGPGLMDAVTKGAMQAGKPVGGFKVGKEAGEWTASNFHPYLPLETYLTCRFFSARKHGLIDCAVRNDSCDRTAVVALPGGVGTLDEMFEILALIQLERIGSELPVPFLVMNYDSFYKKLLDFLGDCEDWGTVAKDEVASLWKICDSNSEALSYLAEFYDLSS******************
Disordered Region (DISEMBL)
MGPDHPHYLQSFELGGEIARLLDCTTWSGAGPGLMDAVTKGAMQAGKPVGGFKVGKEAGEWTASNFHPYLPLETYLTCRFFSARKHGLIDCAVRNDSCDRTAVVALPGGVGTLDEMFEILALIQLERIGSELPVPFLVMNYDSFYKKLLDFLGDCEDWGTVAKDEVASLWKICDSNSEALSYLAEFYDLSSIDKRVHEVNLKSTHGIVS
Disordered Region (DISPRO)
*GPDHPHYLQSFELGGEIARLLDCTTWSGAGPGLMDAVTKGAMQAGKPVGGFKVGKEAGEWTASNFHPYLPLETYLTCRFFSARKHGLIDCAVRNDSCDRTAVVALPGGVGTLDEMFEILALIQLERIGSELPVPFLVMNYDSFYKKLLDFLGDCEDWGTVAKDEVASLWKICDSNSEALSYLAEFYDLSS******************
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MGPDHPHYLQSFELGGEIARLLDCTTWSGAGPGLMDAVTKGAMQAGKPVGGFKVGKEAGEWTASNFHPYLPLETYLTCRFFSARKHGLIDCAVRNDSCDRTAVVALPGGVGTLDEMFEILALIQLERIGSELPVPFLVMNYDSFYKKLLDFLGDCEDWGTVAKDEVASLWKICDSNSEALSYLAEFYDLSSIDKRVHEVNLKSTHGIVS
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	209	2.2.26 [Sep-21-2011]
Q7XDB8	204	Probable cytokinin ribosi	no	no	0.679	0.696	0.267	7e-05
B9F166	244	Probable cytokinin ribosi	no	no	0.746	0.639	0.258	0.0003
P46378	198	LOG family protein ORF6 i	N/A	no	0.550	0.580	0.292	0.0004

>sp|Q7XDB8|LOGLA_ORYSJ Probable cytokinin riboside 5'-monophosphate phosphoribohydrolase LOGL10 OS=Oryza sativa subsp. japonica GN=LOGL10 PE=2 SV=1

 Score = 47.4 bits (111), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 43/161 (26%), Positives = 69/161 (42%), Gaps = 19/161 (11%)

Query: 2   GPDHPHYLQSFELGGE-IARLLDCTTWSGAGPGLMDAVTKGAMQAGKPVGGFKVGKEAGE 60
           G    ++  + ELG E +AR +D   + G   GLM  V++     G+ V         G 
Sbjct: 18  GKKRSYHDAAIELGNELVARSIDLV-YGGGSIGLMGLVSQAVFDGGRHV--------IGV 68

Query: 61  WTASNFHPYLPLETYLTCRFFSARKHGLIDCAVRNDSCDRTAVVALPGGVGTLDEMFEIL 120
              +   P +  ET    R  +       + A ++D     A +ALPGG GTL+E+ E++
Sbjct: 69  IPKTLMTPEISGETVGEVRPVADMHQRKAEMARQSD-----AFIALPGGYGTLEELLEVI 123

Query: 121 ALIQLERIGSELPVPFLVMNYDSFYKKLLDFLGDCEDWGTV 161
              QL         P  ++N D +Y  LL F+    + G +
Sbjct: 124 TWAQL----GIHHKPVGLLNVDGYYNSLLTFIDKAVEEGFI 160

Cytokinin-activating enzyme working in the direct activation pathway. Phosphoribohydrolase that converts inactive cytokinin nucleotides to the biologically active free-base forms.
Oryza sativa subsp. japonica (taxid: 39947)
EC: 3EC: .EC: 2EC: .EC: 2EC: .EC: nEC: 1

>sp|B9F166|LOGL2_ORYSJ Probable cytokinin riboside 5'-monophosphate phosphoribohydrolase LOGL2 OS=Oryza sativa subsp. japonica GN=LOGL2 PE=3 SV=1

 Score = 45.1 bits (105), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 46/178 (25%), Positives = 75/178 (42%), Gaps = 22/178 (12%)

Query: 11  SFELGGE-IARLLDCTTWSGAGPGLMDAVTKGAMQAGKPVGGFKVGKEAGEWTASNFHPY 69
           + ELG E +AR +D   + G   GLM  V++     G+ V G                P 
Sbjct: 41  AIELGKELVARNIDLV-YGGGSVGLMGLVSQAVHNGGRHVIGV---------IPKTLMPR 90

Query: 70  -LPLETYLTCRFFSARKHGLIDCAVRNDSCDRTAVVALPGGVGTLDEMFEILALIQLERI 128
            +  ET    +  S       + A ++D     A +ALPGG GTL+E+ E++A  QL   
Sbjct: 91  EISGETVGEVKAVSDMHQRKAEMARQSD-----AFIALPGGYGTLEELLEVIAWAQLGIH 145

Query: 129 GSELPVPFLVMNYDSFYKKLLDFLGDCEDWGTVAKDEVASLWKICDSNSEALSYLAEF 186
                 P  ++N D +Y  LL F+    + G + +     +  +  +  E +  L E+
Sbjct: 146 DK----PVGLLNVDGYYNPLLSFIDKAVEEGFI-RPSARHIIVLAPTPKELIEKLEEY 198

Cytokinin-activating enzyme working in the direct activation pathway. Phosphoribohydrolase that converts inactive cytokinin nucleotides to the biologically active free-base forms.

Oryza sativa subsp. japonica (taxid: 39947)

EC: 3

EC: .

EC: 2

EC: .

EC: 2

EC: .

EC: n

EC: 1

>sp|P46378|FAS6_RHOFA LOG family protein ORF6 in fasciation locus OS=Rhodococcus fascians GN=fas6 PE=2 SV=1

 Score = 44.7 bits (104), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 43/147 (29%), Positives = 64/147 (43%), Gaps = 32/147 (21%)

Query: 14  LGGEIARLLDCTTWSGAGPGLMDAVTKGAMQAGKPVGGFKVGKEAGEWTASNFHPYLPLE 73
           +G  IAR      + GA  GLM  +   A+ +G    G  VG     +TA      +P  
Sbjct: 43  MGRAIARSKLRLVYGGARVGLMGTLANAALDSG----GTVVGVIPESFTA------IP-- 90

Query: 74  TYLTCRFFSARKHGLIDCAVRNDSCDRTAV--------VALPGGVGTLDEMFEILALIQL 125
                    A  HGL +  V +D   R A+        +ALPGGVGT +E FE+L    L
Sbjct: 91  --------EAAHHGLTELHVVHDMHQRKALMAELGDAFIALPGGVGTAEEFFEVLTWSHL 142

Query: 126 ERIGSELPVPFLVMNYDSFYKKLLDFL 152
                    P +++N + +Y+ LL ++
Sbjct: 143 GLHNK----PCVLLNDNEYYRPLLSYI 165

The FAS-operon encodes genes involved in cytokinin production and in host plant fasciation (leafy gall).

Rhodococcus fascians (taxid: 1828)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	209
255576280	302	carboxy-lyase, putative [Ricinus communi	0.980	0.678	0.776	2e-91
156138540	305	putative lysine decarbxylase [Nicotiana	0.923	0.632	0.777	1e-90
356527115	305	PREDICTED: probable cytokinin riboside 5	0.980	0.672	0.760	2e-90
224100075	226	predicted protein [Populus trichocarpa]	0.904	0.836	0.820	2e-90
357459923	312	hypothetical protein MTR_3g055920 [Medic	1.0	0.669	0.752	5e-89
225460791	310	PREDICTED: uncharacterized protein LOC10	1.0	0.674	0.746	1e-88
449467507	298	PREDICTED: probable cytokinin riboside 5	0.980	0.687	0.726	2e-88
357459921	312	hypothetical protein MTR_3g055920 [Medic	1.0	0.669	0.742	7e-88
50399936	335	expressed protein [Oryza sativa Japonica	0.918	0.573	0.75	5e-86
242038951	329	hypothetical protein SORBIDRAFT_01g01550	0.942	0.598	0.737	9e-86

>gi|255576280|ref|XP_002529033.1| carboxy-lyase, putative [Ricinus communis] gi|223531513|gb|EEF33344.1| carboxy-lyase, putative [Ricinus communis]

 Score =  340 bits (872), Expect = 2e-91,   Method: Compositional matrix adjust.
 Identities = 160/206 (77%), Positives = 178/206 (86%), Gaps = 1/206 (0%)

Query: 1   MGPDHPHYLQSFELGGEIARLLDCTTWSGAGPGLMDAVTKGAMQAGKPVGGFKVGKEAGE 60
           MGPDHPHYLQ+ EL  E+A+LLDCT+W GAGPGLMDA  KGA+QAGKPVGGFK+ KEAGE
Sbjct: 97  MGPDHPHYLQALELSREVAKLLDCTSWMGAGPGLMDATIKGALQAGKPVGGFKIAKEAGE 156

Query: 61  WTASNFHPYLPLETYLTCRFFSARKHGLIDCAVRNDSCDRTAVVALPGGVGTLDEMFEIL 120
           WTASNFHPYLP ETYLTCRFFSARKHGL+D AVRN   DRTAVVALPGG+GTLDEMFEIL
Sbjct: 157 WTASNFHPYLPSETYLTCRFFSARKHGLVDAAVRNTRSDRTAVVALPGGIGTLDEMFEIL 216

Query: 121 ALIQLERIGSELPVPFLVMNYDSFYKKLLDFLGDCEDWGTVAKDEVASLWKICDSNSEAL 180
           ALIQLERIGS LPVPF+VMNYDSFY+KLLDF+ +CEDWGTV+K EV  LWKIC+SNSEAL
Sbjct: 217 ALIQLERIGSALPVPFIVMNYDSFYQKLLDFIQNCEDWGTVSKGEVTPLWKICNSNSEAL 276

Query: 181 SYLAEFYDL-SSIDKRVHEVNLKSTH 205
           +YL +FY+L SS D+  H     S H
Sbjct: 277 AYLTDFYNLHSSSDEYGHGKMPTSAH 302

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|156138540|emb|CAO91858.1| putative lysine decarbxylase [Nicotiana tabacum]

 Score =  337 bits (865), Expect = 1e-90,   Method: Compositional matrix adjust.
 Identities = 150/193 (77%), Positives = 177/193 (91%)

Query: 1   MGPDHPHYLQSFELGGEIARLLDCTTWSGAGPGLMDAVTKGAMQAGKPVGGFKVGKEAGE 60
           MGP+HPHY+++FELG +IA LLDCTTWSGAGPGLMDA T+GA+QAGKPVGGFK+G+EAGE
Sbjct: 98  MGPEHPHYIKTFELGSKIATLLDCTTWSGAGPGLMDAATQGALQAGKPVGGFKIGREAGE 157

Query: 61  WTASNFHPYLPLETYLTCRFFSARKHGLIDCAVRNDSCDRTAVVALPGGVGTLDEMFEIL 120
           WTASNFHPYLP E+YLTCRFFSARKHGL+D  VR  S +RTAVVALPGG+GTLDE+FEI+
Sbjct: 158 WTASNFHPYLPSESYLTCRFFSARKHGLVDAVVRCKSSERTAVVALPGGIGTLDEIFEIM 217

Query: 121 ALIQLERIGSELPVPFLVMNYDSFYKKLLDFLGDCEDWGTVAKDEVASLWKICDSNSEAL 180
           ALIQLERIGS+LPVPFL+MNYDSFY  LL+FL DCE WGTV+K+EV+SLWK+C++NSEAL
Sbjct: 218 ALIQLERIGSQLPVPFLLMNYDSFYSNLLEFLNDCEKWGTVSKNEVSSLWKVCNNNSEAL 277

Query: 181 SYLAEFYDLSSID 193
           +YL EFY LS ++
Sbjct: 278 AYLTEFYGLSPVE 290

Source: Nicotiana tabacum

Species: Nicotiana tabacum

Genus: Nicotiana

Family: Solanaceae

Order: Solanales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356527115|ref|XP_003532159.1| PREDICTED: probable cytokinin riboside 5'-monophosphate phosphoribohydrolase LOGL3-like [Glycine max]

 Score =  337 bits (864), Expect = 2e-90,   Method: Compositional matrix adjust.
 Identities = 156/205 (76%), Positives = 178/205 (86%)

Query: 1   MGPDHPHYLQSFELGGEIARLLDCTTWSGAGPGLMDAVTKGAMQAGKPVGGFKVGKEAGE 60
           MGP H HY+Q+ EL  EIA LLDCT+WSGAGPGLMDAVT+G+M AGKPVGGFK+G+EAGE
Sbjct: 96  MGPSHSHYVQAQELAKEIANLLDCTSWSGAGPGLMDAVTQGSMLAGKPVGGFKIGREAGE 155

Query: 61  WTASNFHPYLPLETYLTCRFFSARKHGLIDCAVRNDSCDRTAVVALPGGVGTLDEMFEIL 120
           WTASNFHPYLP E YLT RFFSARKHGL+D  VRN+S D+TAVVALPGG+GTLDE+FEIL
Sbjct: 156 WTASNFHPYLPSENYLTFRFFSARKHGLVDAVVRNNSFDKTAVVALPGGIGTLDEVFEIL 215

Query: 121 ALIQLERIGSELPVPFLVMNYDSFYKKLLDFLGDCEDWGTVAKDEVASLWKICDSNSEAL 180
           ALIQLERIGS+ PVPFL+MNYDSFY KLL+FL DCE WGTV+K EVASLWK+C+SNSEAL
Sbjct: 216 ALIQLERIGSKFPVPFLLMNYDSFYSKLLEFLNDCEGWGTVSKGEVASLWKVCNSNSEAL 275

Query: 181 SYLAEFYDLSSIDKRVHEVNLKSTH 205
           +YL EFY +SS DK  +   L ST+
Sbjct: 276 AYLEEFYGISSSDKSKNVTKLYSTY 300

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224100075|ref|XP_002311733.1| predicted protein [Populus trichocarpa] gi|222851553|gb|EEE89100.1| predicted protein [Populus trichocarpa]

 Score =  337 bits (863), Expect = 2e-90,   Method: Compositional matrix adjust.
 Identities = 155/189 (82%), Positives = 174/189 (92%)

Query: 1   MGPDHPHYLQSFELGGEIARLLDCTTWSGAGPGLMDAVTKGAMQAGKPVGGFKVGKEAGE 60
           MGPDHPHY Q+ ELG E+A LLDCT+W+GAGPGLMDA TKGA++AGKPVGGFK+ KEAGE
Sbjct: 37  MGPDHPHYSQALELGREVANLLDCTSWTGAGPGLMDAATKGALEAGKPVGGFKIAKEAGE 96

Query: 61  WTASNFHPYLPLETYLTCRFFSARKHGLIDCAVRNDSCDRTAVVALPGGVGTLDEMFEIL 120
           WTASNFH YLP ETYLTCRFFSARKHGL+D AVR+   DRTAVVALPGG+GTLDEMFEIL
Sbjct: 97  WTASNFHSYLPSETYLTCRFFSARKHGLVDAAVRSSCSDRTAVVALPGGIGTLDEMFEIL 156

Query: 121 ALIQLERIGSELPVPFLVMNYDSFYKKLLDFLGDCEDWGTVAKDEVASLWKICDSNSEAL 180
            LIQL+RIGSELPVPFLVMNYDS+Y+KLLDFLGDCE+WGTV+K EVASLWKIC++NSEAL
Sbjct: 157 TLIQLQRIGSELPVPFLVMNYDSYYQKLLDFLGDCENWGTVSKGEVASLWKICENNSEAL 216

Query: 181 SYLAEFYDL 189
           +YLA+FY L
Sbjct: 217 AYLADFYGL 225

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357459923|ref|XP_003600243.1| hypothetical protein MTR_3g055920 [Medicago truncatula] gi|217074988|gb|ACJ85854.1| unknown [Medicago truncatula] gi|355489291|gb|AES70494.1| hypothetical protein MTR_3g055920 [Medicago truncatula]

 Score =  332 bits (851), Expect = 5e-89,   Method: Compositional matrix adjust.
 Identities = 158/210 (75%), Positives = 181/210 (86%), Gaps = 1/210 (0%)

Query: 1   MGPDHPHYLQSFELGGEIARLLDCTTWSGAGPGLMDAVTKGAMQAGKPVGGFKVGKEAGE 60
           MG  H HY+Q+ EL  EIA LLD TTWSGAGPGLMDAVT+GA+ AGKPVGGFK+G+EAGE
Sbjct: 103 MGSSHSHYVQAQELAKEIANLLDSTTWSGAGPGLMDAVTQGALLAGKPVGGFKIGREAGE 162

Query: 61  WTASNFHPYLPLETYLTCRFFSARKHGLIDCAVRNDSCDRTAVVALPGGVGTLDEMFEIL 120
           WTASNFHPYLP E YLTCRFFSARKHGL+D  VRN+S D+TAVVALPGG+GTLDE+FE+L
Sbjct: 163 WTASNFHPYLPSENYLTCRFFSARKHGLVDAVVRNNSFDKTAVVALPGGIGTLDELFEML 222

Query: 121 ALIQLERIGSELPVPFLVMNYDSFYKKLLDFLGDCEDWGTVAKDEVASLWKICDSNSEAL 180
           ALIQLERIGS+LPVPFL+MNYDSFY KLLDFL  CED GTV+K EVASLWK+C+SNSEAL
Sbjct: 223 ALIQLERIGSKLPVPFLLMNYDSFYSKLLDFLDVCEDRGTVSKGEVASLWKVCNSNSEAL 282

Query: 181 SYLAEFYDLSSID-KRVHEVNLKSTHGIVS 209
           +YLA+FY +SS D  +  E  L+STH + S
Sbjct: 283 AYLADFYCISSGDISQKKETKLQSTHDLPS 312

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225460791|ref|XP_002276560.1| PREDICTED: uncharacterized protein LOC100243479 [Vitis vinifera] gi|297737525|emb|CBI26726.3| unnamed protein product [Vitis vinifera]

 Score =  330 bits (847), Expect = 1e-88,   Method: Compositional matrix adjust.
 Identities = 156/209 (74%), Positives = 178/209 (85%)

Query: 1   MGPDHPHYLQSFELGGEIARLLDCTTWSGAGPGLMDAVTKGAMQAGKPVGGFKVGKEAGE 60
           MGPDH HYLQ+ ELG E+A LLDCT+W+GAGPGLMDA +KGA+QAGKPVGGFK+G+EAG+
Sbjct: 93  MGPDHSHYLQALELGREVANLLDCTSWTGAGPGLMDAASKGALQAGKPVGGFKIGREAGQ 152

Query: 61  WTASNFHPYLPLETYLTCRFFSARKHGLIDCAVRNDSCDRTAVVALPGGVGTLDEMFEIL 120
            TA +FHPYLP ETY TCRFFSARKHGL+D AVR+ +CDRTAVVALPGG+GTLDE+FEIL
Sbjct: 153 QTALSFHPYLPSETYFTCRFFSARKHGLVDAAVRSCNCDRTAVVALPGGIGTLDEVFEIL 212

Query: 121 ALIQLERIGSELPVPFLVMNYDSFYKKLLDFLGDCEDWGTVAKDEVASLWKICDSNSEAL 180
           ALIQL+RIGSELPVPFL+MNYDSFY KLLDFL D E WGTV K EV SLWK+C++NSEAL
Sbjct: 213 ALIQLQRIGSELPVPFLLMNYDSFYSKLLDFLSDSECWGTVCKGEVESLWKVCNNNSEAL 272

Query: 181 SYLAEFYDLSSIDKRVHEVNLKSTHGIVS 209
           SYLAEFYDL   D    E  L +  G +S
Sbjct: 273 SYLAEFYDLPLGDNGKCETGLATASGPIS 301

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449467507|ref|XP_004151464.1| PREDICTED: probable cytokinin riboside 5'-monophosphate phosphoribohydrolase LOGL9-like [Cucumis sativus] gi|449524603|ref|XP_004169311.1| PREDICTED: probable cytokinin riboside 5'-monophosphate phosphoribohydrolase LOGL9-like [Cucumis sativus]

 Score =  330 bits (847), Expect = 2e-88,   Method: Compositional matrix adjust.
 Identities = 149/205 (72%), Positives = 175/205 (85%)

Query: 1   MGPDHPHYLQSFELGGEIARLLDCTTWSGAGPGLMDAVTKGAMQAGKPVGGFKVGKEAGE 60
           MGPDH HY Q+FEL  EI+ LLDCTTWSG GPGLMDAVTKGA+QAG PVGGFK+G+E+GE
Sbjct: 94  MGPDHAHYKQAFELSREISELLDCTTWSGVGPGLMDAVTKGALQAGNPVGGFKIGRESGE 153

Query: 61  WTASNFHPYLPLETYLTCRFFSARKHGLIDCAVRNDSCDRTAVVALPGGVGTLDEMFEIL 120
           WT+S FHPYLP ETY TCRFFSARKHGL+D AVR+ S DRTA V LPGG+GT DE+FEIL
Sbjct: 154 WTSSKFHPYLPTETYFTCRFFSARKHGLVDAAVRSCSSDRTAFVTLPGGIGTFDEVFEIL 213

Query: 121 ALIQLERIGSELPVPFLVMNYDSFYKKLLDFLGDCEDWGTVAKDEVASLWKICDSNSEAL 180
           ALIQL RIGS+LPVPFL+MNYDSFY KLL+F  DCE+WGT+AK EV SLWK+CD+N++A+
Sbjct: 214 ALIQLRRIGSKLPVPFLLMNYDSFYSKLLEFFNDCENWGTLAKGEVDSLWKVCDNNADAV 273

Query: 181 SYLAEFYDLSSIDKRVHEVNLKSTH 205
           +YL+ FY L   D+  +EV L+STH
Sbjct: 274 AYLSSFYSLCDQDRVKNEVGLESTH 298

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357459921|ref|XP_003600242.1| hypothetical protein MTR_3g055920 [Medicago truncatula] gi|355489290|gb|AES70493.1| hypothetical protein MTR_3g055920 [Medicago truncatula]

 Score =  328 bits (842), Expect = 7e-88,   Method: Compositional matrix adjust.
 Identities = 156/210 (74%), Positives = 179/210 (85%), Gaps = 1/210 (0%)

Query: 1   MGPDHPHYLQSFELGGEIARLLDCTTWSGAGPGLMDAVTKGAMQAGKPVGGFKVGKEAGE 60
           MG  H HY+Q+ EL  E   LLD TTWSGAGPGLMDAVT+GA+ AGKPVGGFK+G+EAGE
Sbjct: 103 MGSSHSHYVQAQELAKEATNLLDSTTWSGAGPGLMDAVTQGALLAGKPVGGFKIGREAGE 162

Query: 61  WTASNFHPYLPLETYLTCRFFSARKHGLIDCAVRNDSCDRTAVVALPGGVGTLDEMFEIL 120
           WTASNFHPYLP E YLTCRFFSARKHGL+D  VRN+S D+TAVVALPGG+GTLDE+FE+L
Sbjct: 163 WTASNFHPYLPSENYLTCRFFSARKHGLVDAVVRNNSFDKTAVVALPGGIGTLDELFEML 222

Query: 121 ALIQLERIGSELPVPFLVMNYDSFYKKLLDFLGDCEDWGTVAKDEVASLWKICDSNSEAL 180
           ALIQLERIGS+LPVPFL+MNYDSFY KLLDFL  CED GTV+K EVASLWK+C+SNSEAL
Sbjct: 223 ALIQLERIGSKLPVPFLLMNYDSFYSKLLDFLDVCEDRGTVSKGEVASLWKVCNSNSEAL 282

Query: 181 SYLAEFYDLSSID-KRVHEVNLKSTHGIVS 209
           +YLA+FY +SS D  +  E  L+STH + S
Sbjct: 283 AYLADFYCISSGDISQKKETKLQSTHDLPS 312

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|50399936|gb|AAT76324.1| expressed protein [Oryza sativa Japonica Group] gi|108709566|gb|ABF97361.1| Possible lysine decarboxylase family protein, expressed [Oryza sativa Japonica Group] gi|215736866|dbj|BAG95795.1| unnamed protein product [Oryza sativa Japonica Group]

 Score =  322 bits (825), Expect = 5e-86,   Method: Compositional matrix adjust.
 Identities = 144/192 (75%), Positives = 168/192 (87%)

Query: 3   PDHPHYLQSFELGGEIARLLDCTTWSGAGPGLMDAVTKGAMQAGKPVGGFKVGKEAGEWT 62
           P HPHYL + EL  EIARLLDCTTWSGAGPG MDA T+GA++AGKPVGGFK+GKEAGEWT
Sbjct: 130 PTHPHYLHAAELSREIARLLDCTTWSGAGPGFMDAATQGALEAGKPVGGFKIGKEAGEWT 189

Query: 63  ASNFHPYLPLETYLTCRFFSARKHGLIDCAVRNDSCDRTAVVALPGGVGTLDEMFEILAL 122
            SNFHPYLP E+YLTCRFFSARKHGL+D AVRN   DRTA++ALPGG+GTLDE+FE++AL
Sbjct: 190 TSNFHPYLPSESYLTCRFFSARKHGLVDAAVRNCPTDRTAIIALPGGIGTLDELFEMMAL 249

Query: 123 IQLERIGSELPVPFLVMNYDSFYKKLLDFLGDCEDWGTVAKDEVASLWKICDSNSEALSY 182
           IQLERIGS LPVPFL++NYDS+Y KLLDFL DCE+WGTVA  EVASLWK+C+ N EAL Y
Sbjct: 250 IQLERIGSTLPVPFLLLNYDSYYSKLLDFLNDCEEWGTVAPGEVASLWKVCNGNHEALEY 309

Query: 183 LAEFYDLSSIDK 194
           LA+FY++   ++
Sbjct: 310 LAQFYNVPLAER 321

Source: Oryza sativa Japonica Group

Species: Oryza sativa

Genus: Oryza

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|242038951|ref|XP_002466870.1| hypothetical protein SORBIDRAFT_01g015500 [Sorghum bicolor] gi|241920724|gb|EER93868.1| hypothetical protein SORBIDRAFT_01g015500 [Sorghum bicolor]

 Score =  322 bits (824), Expect = 9e-86,   Method: Compositional matrix adjust.
 Identities = 146/198 (73%), Positives = 172/198 (86%), Gaps = 1/198 (0%)

Query: 3   PDHPHYLQSFELGGEIARLLDCTTWSGAGPGLMDAVTKGAMQAGKPVGGFKVGKEAGEWT 62
           P HPH+LQ+ EL  EIARLLDCTTW+GAGPGLMDA  +GA++AGKPVGG K+ KEAGEWT
Sbjct: 120 PTHPHFLQTTELAREIARLLDCTTWTGAGPGLMDAAIQGALEAGKPVGGLKIAKEAGEWT 179

Query: 63  ASNFHPYLPLETYLTCRFFSARKHGLIDCAVRNDSCDRTAVVALPGGVGTLDEMFEILAL 122
           +S FHPYLP ETYLTCRFFSARKHGL+D AVR+   DRTAVVALPGGVGTLDE+FEI+AL
Sbjct: 180 SSGFHPYLPPETYLTCRFFSARKHGLVDAAVRSSPTDRTAVVALPGGVGTLDELFEIMAL 239

Query: 123 IQLERIGSELPVPFLVMNYDSFYKKLLDFLGDCEDWGTVAKDEVASLWKICDSNSEALSY 182
           IQLERIGS LPVPFL++NYDS+Y KLLDFL DC++WGTVA  EV SLWK+CD N EAL Y
Sbjct: 240 IQLERIGSALPVPFLLLNYDSYYSKLLDFLNDCQEWGTVAPGEVESLWKVCDGNHEALEY 299

Query: 183 LAEFYDLSSIDKRVHEVN 200
           LAEFY++ + D+R ++++
Sbjct: 300 LAEFYNVPA-DQRNYQIS 316

Source: Sorghum bicolor

Species: Sorghum bicolor

Genus: Sorghum

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	209
TAIR|locus:505006177	306	AT1G50575 "AT1G50575" [Arabido	0.961	0.656	0.688	8.1e-76
UNIPROTKB|Q0BZM4	250	HNE_2374 "Putative uncharacter	0.636	0.532	0.333	2.4e-12
TIGR_CMR|SPO_3342	291	SPO_3342 "decarboxylase family	0.655	0.470	0.299	4.3e-08
TIGR_CMR|GSU_1904	342	GSU_1904 "decarboxylase family	0.684	0.418	0.265	2.6e-05
CGD|CAL0000804	222	orf19.1723 [Candida albicans (	0.392	0.369	0.340	5.4e-05
UNIPROTKB|Q5AJ69	222	CaO19.1723 "Putative uncharact	0.392	0.369	0.340	5.4e-05
TIGR_CMR|GSU_2766	196	GSU_2766 "decarboxylase family	0.210	0.224	0.437	6.8e-05
TAIR|locus:2828223	213	LOG1 "AT2G28305" [Arabidopsis	0.272	0.267	0.360	0.00036
TAIR|locus:2084051	215	LOG4 "AT3G53450" [Arabidopsis	0.272	0.265	0.377	0.00038
UNIPROTKB|Q5ZC82	242	LOG "Cytokinin riboside 5'-mon	0.282	0.243	0.412	0.00044

TAIR|locus:505006177 AT1G50575 "AT1G50575" [Arabidopsis thaliana (taxid:3702)]

 Score = 764 (274.0 bits), Expect = 8.1e-76, P = 8.1e-76
 Identities = 139/202 (68%), Positives = 169/202 (83%)

Query:     3 PDHPHYLQSFELGGEIARLLDCTTWSGAGPGLMDAVTKGAMQAGKPVGGFKVGKEAGEWT 62
             P+H HYLQ+ EL  E A LLDCTTWSGAGPGLMDAVT+GA++A KPVGG K+ KEAGEWT
Sbjct:   101 PNHSHYLQAQELSREAATLLDCTTWSGAGPGLMDAVTEGALEAEKPVGGIKIEKEAGEWT 160

Query:    63 ASNFHPYLPLETYLTCRFFSARKHGLIDCAVRNDSCDRTAVVALPGGVGTLDEMFEILAL 122
             AS FHPYLP + Y TCRFFSARKHGL+D  +RN+  ++TA++ALPGG+GTLDEMFEILAL
Sbjct:   161 ASKFHPYLPPQNYHTCRFFSARKHGLVDAVIRNNVSEKTAIIALPGGIGTLDEMFEILAL 220

Query:   123 IQLERIGSELPVPFLVMNYDSFYKKLLDFLGDCEDWGTVAKDEVASLWKICDSNSEALSY 182
             IQLERIGS LPVPF+VMNYD+FY KLL+F+  CE+ GTV+K EV++LWK+C++N EAL+Y
Sbjct:   221 IQLERIGSALPVPFIVMNYDAFYSKLLEFIETCENLGTVSKGEVSALWKVCNNNFEALTY 280

Query:   183 LAEFYDLSSIDKRVHEVNLKST 204
             LAEFYDL     ++ E  L+ T
Sbjct:   281 LAEFYDLPDGSAKL-ETELRKT 301

GO:0008152 "metabolic process" evidence=ISS

GO:0009507 "chloroplast" evidence=ISM

GO:0016831 "carboxy-lyase activity" evidence=ISS

UNIPROTKB|Q0BZM4 HNE_2374 "Putative uncharacterized protein" [Hyphomonas neptunium ATCC 15444 (taxid:228405)]

 Score = 165 (63.1 bits), Expect = 2.4e-12, P = 2.4e-12
 Identities = 51/153 (33%), Positives = 80/153 (52%)

Query:    28 SGAGPGLMDAVTKGAMQAGKPVGGFKVGKEAGEWTASNFHPYLPLETYLTCRFFSARKHG 87
             +G GPG+M+A  +GA  AG    GF +  +     A N  PY+  +      +F+ RK  
Sbjct:   102 TGGGPGIMEAANRGARDAGAVTIGFNI--QLPHEQAPN--PYITSQLSFQFHYFAMRKMH 157

Query:    88 LIDCAVRNDSCDRTAVVALPGGVGTLDEMFEILALIQLERIGSELPVPFLVMNYD-SFYK 146
             L   A+R       A+V  PGG GT+DE+FE+L L Q  + G  +PV   V+ YD  F+ 
Sbjct:   158 L---AMR-----ARALVIFPGGFGTMDELFELLTLSQTGK-GHHMPV---VL-YDRDFWT 204

Query:   147 KLLDFLGDCEDWGTVAKDEVASLWKICDSNSEA 179
             ++++F     D G ++ D++  L++  D   EA
Sbjct:   205 RIINFEA-LADAGVISPDDL-KLFEFADDPEEA 235

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

TIGR_CMR|SPO_3342 SPO_3342 "decarboxylase family protein" [Ruegeria pomeroyi DSS-3 (taxid:246200)]

 Score = 141 (54.7 bits), Expect = 4.3e-08, P = 4.3e-08
 Identities = 47/157 (29%), Positives = 80/157 (50%)

Query:    28 SGAGPGLMDAVTKGAMQAGKPVGGFKVGKEAGEWTASNFHPYLPLETYLTCRFFSARK-H 86
             +G GPG+M+A  +GA  AG    G  +     +  A N   ++  E      +F+ RK H
Sbjct:   139 TGGGPGVMEAGNRGAKDAGGCSIGLNIVLPHEQ--APNL--FVTPELSFNFHYFAIRKMH 194

Query:    87 GLIDCAVRNDSCDRTAVVALPGGVGTLDEMFEILALIQLERIGSELPVPFLVMNYDSFYK 146
              L+            A+   PGG GTLDE+FE L LIQ  R+     VPFL+   + F++
Sbjct:   195 FLMRAR---------AITIFPGGFGTLDELFESLTLIQTGRMER---VPFLLFGRE-FWE 241

Query:   147 KLLDFLGDCEDWGTVAKDEVASLWKICDSNSEALSYL 183
             +++++     D GT++ +++  L++  D+  EA+  +
Sbjct:   242 RVINWRA-LADAGTISAEDL-DLFRFVDTAQEAVEII 276

GO:0008152 "metabolic process" evidence=ISS

GO:0016831 "carboxy-lyase activity" evidence=ISS

TIGR_CMR|GSU_1904 GSU_1904 "decarboxylase family protein" [Geobacter sulfurreducens PCA (taxid:243231)]

 Score = 121 (47.7 bits), Expect = 2.6e-05, P = 2.6e-05
 Identities = 43/162 (26%), Positives = 70/162 (43%)

Query:    28 SGAGPGLMDAVTKGAMQAGKPVGGFKVGKEAGEWTASNFHPYLPLETYLTCRFFSARKHG 87
             +G GPG+M A  +GA          ++  E         +P L     +  ++F  RK  
Sbjct:   112 TGGGPGIMQAGNEGAGSDRSFAVNIRLPFEQKPNPVMLQNPRL-----INYKYFFNRKVA 166

Query:    88 LIDCAVRNDSCDRTAVVALPGGVGTLDEMFEILALIQLERIGSELPVPF-LVMNYDSFYK 146
              +         +  A+   PGG GTLDE  E+  LIQ    G   P P  L+ + D ++ 
Sbjct:   167 FVK--------ESNAIAVFPGGFGTLDEAMEVFTLIQT---GKTSPKPLVLIDDSDGYWD 215

Query:   147 KLLDFLGDCE-DWGTVAKDEVASLWKICDSNSEALSYLAEFY 187
             +  DF+  C    G ++ ++  S++ I     EA+  + EFY
Sbjct:   216 RWFDFVTSCILGKGFISAEDF-SIFTITRDEDEAIRVIEEFY 256

GO:0008152 "metabolic process" evidence=ISS

GO:0016831 "carboxy-lyase activity" evidence=ISS

CGD|CAL0000804 orf19.1723 [Candida albicans (taxid:5476)]

 Score = 107 (42.7 bits), Expect = 5.4e-05, Sum P(2) = 5.4e-05
 Identities = 30/88 (34%), Positives = 49/88 (55%)

Query:   102 AVVALPGGVGTLDEMFEILALIQLERIGSELPVPFLVMNYDSFYKKLLDFLGDCEDWGTV 161
             A VALPGG+G++DE+ EI    QL   G  + V  +   YD+F+K +  F+ DC   G +
Sbjct:   129 AFVALPGGIGSIDELAEITTWCQLNIHGKPIVVYNVDGYYDNFFKMIQGFV-DC---GFL 184

Query:   162 AKDEVASLWKICDSNSEALSYLAEFYDL 189
             ++     + K+ +S  E L  + E Y++
Sbjct:   185 SEKN-GQIIKVANSVEEVLEII-ENYEI 210

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0014074 "response to purine-containing compound" evidence=IEA

UNIPROTKB|Q5AJ69 CaO19.1723 "Putative uncharacterized protein" [Candida albicans SC5314 (taxid:237561)]

 Score = 107 (42.7 bits), Expect = 5.4e-05, Sum P(2) = 5.4e-05
 Identities = 30/88 (34%), Positives = 49/88 (55%)

Query:   102 AVVALPGGVGTLDEMFEILALIQLERIGSELPVPFLVMNYDSFYKKLLDFLGDCEDWGTV 161
             A VALPGG+G++DE+ EI    QL   G  + V  +   YD+F+K +  F+ DC   G +
Sbjct:   129 AFVALPGGIGSIDELAEITTWCQLNIHGKPIVVYNVDGYYDNFFKMIQGFV-DC---GFL 184

Query:   162 AKDEVASLWKICDSNSEALSYLAEFYDL 189
             ++     + K+ +S  E L  + E Y++
Sbjct:   185 SEKN-GQIIKVANSVEEVLEII-ENYEI 210

GO:0003674 "molecular_function" evidence=ND

TIGR_CMR|GSU_2766 GSU_2766 "decarboxylase family protein" [Geobacter sulfurreducens PCA (taxid:243231)]

 Score = 101 (40.6 bits), Expect = 6.8e-05, Sum P(2) = 6.8e-05
 Identities = 21/48 (43%), Positives = 31/48 (64%)

Query:   104 VALPGGVGTLDEMFEILALIQLERIGSELPVPFLVMNYDSFYKKLLDF 151
             +ALPGG+GT++E  E+L  +QL   G     P  ++N D +Y +LLDF
Sbjct:   102 IALPGGIGTIEEFVEVLTWLQLGIHGK----PCGLLNSDGYYDRLLDF 145

GO:0008152 "metabolic process" evidence=ISS

GO:0016831 "carboxy-lyase activity" evidence=ISS

TAIR|locus:2828223 LOG1 "AT2G28305" [Arabidopsis thaliana (taxid:3702)]

 Score = 93 (37.8 bits), Expect = 0.00036, Sum P(2) = 0.00036
 Identities = 22/61 (36%), Positives = 34/61 (55%)

Query:   102 AVVALPGGVGTLDEMFEILALIQLERIGSELPVPFLVMNYDSFYKKLLDFLGDCEDWGTV 161
             A +ALPGG GTL+E+ E++   QL     + PV  L  N + +Y  LL F+    + G +
Sbjct:   106 AFIALPGGYGTLEELLEVITWAQLGI--HDKPVGLL--NVEGYYNSLLSFIDKAVEEGFI 161

Query:   162 A 162
             +
Sbjct:   162 S 162

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

GO:0005634 "nucleus" evidence=IDA

GO:0005829 "cytosol" evidence=IDA

TAIR|locus:2084051 LOG4 "AT3G53450" [Arabidopsis thaliana (taxid:3702)]

 Score = 97 (39.2 bits), Expect = 0.00038, Sum P(2) = 0.00038
 Identities = 23/61 (37%), Positives = 34/61 (55%)

Query:   102 AVVALPGGVGTLDEMFEILALIQLERIGSELPVPFLVMNYDSFYKKLLDFLGDCEDWGTV 161
             A +ALPGG GTL+E+ E++   QL     + PV  L  N D +Y  LL F+    + G +
Sbjct:   112 AFIALPGGYGTLEELLEVITWAQLGI--HDKPVGLL--NVDGYYNSLLSFIDKAVEEGFI 167

Query:   162 A 162
             +
Sbjct:   168 S 168

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM;IDA

GO:0005829 "cytosol" evidence=IDA

UNIPROTKB|Q5ZC82 LOG "Cytokinin riboside 5'-monophosphate phosphoribohydrolase LOG" [Oryza sativa Japonica Group (taxid:39947)]

 Score = 100 (40.3 bits), Expect = 0.00044, Sum P(2) = 0.00044
 Identities = 26/63 (41%), Positives = 35/63 (55%)

Query:   102 AVVALPGGVGTLDEMFEILALIQLERIGSELPVPFLVMNYDSFYKKLLDFLGDCEDWGTV 161
             A +ALPGG GTL+E+ E++   QL  I  + PV  L  N D FY   L F+      G +
Sbjct:   134 AFIALPGGYGTLEELLEVITWAQLG-IHKK-PVGLL--NVDGFYDPFLSFIDMAVSEGFI 189

Query:   162 AKD 164
             A+D
Sbjct:   190 AED 192

GO:0009691 "cytokinin biosynthetic process" evidence=IDA

GO:0048509 "regulation of meristem development" evidence=IMP

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: gw1.VIII.588.1 hypothetical protein (226 aa) (Populus trichocarpa)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	209
pfam03641	130	pfam03641, Lysine_decarbox, Possible lysine decarb	1e-26
COG1611	205	COG1611, COG1611, Predicted Rossmann fold nucleoti	2e-19
TIGR00730	178	TIGR00730, TIGR00730, TIGR00730 family protein	3e-12

>gnl|CDD|217655 pfam03641, Lysine_decarbox, Possible lysine decarboxylase

 Score = 98.4 bits (246), Expect = 1e-26
 Identities = 44/151 (29%), Positives = 62/151 (41%), Gaps = 24/151 (15%)

Query: 35  MDAVTKGAMQAGKPVGGFKVGKEAGEWTASNFHPYLPLETYLTCR---FFSARKHGLIDC 91
           M AV  GA++AG  V G      A E         +P               RK  +   
Sbjct: 1   MGAVADGALEAGGRVIGIIPNILAPE--------EIPNPIVTELIIVPDMHERKAAMARL 52

Query: 92  AVRNDSCDRTAVVALPGGVGTLDEMFEILALIQLERIGSELPVPFLVMNYDSFYKKLLDF 151
           A         A VALPGG GTL+E+FEIL  IQL         P +++N + +Y  LL+F
Sbjct: 53  A--------DAFVALPGGFGTLEELFEILTWIQLGIH----QKPIILLNPNGYYDPLLEF 100

Query: 152 LGDCEDWGTVAKDEVASLWKICDSNSEALSY 182
           +    + G ++      L  + D   EA+  
Sbjct: 101 IDHMVEEGFISP-AARELIIVVDDPEEAVEK 130

The members of this family share a highly conserved motif PGGXGTXXE that is probably functionally important. This family includes proteins annotated as lysine decarboxylases, although the evidence for this is not clear. Length = 130

>gnl|CDD|224527 COG1611, COG1611, Predicted Rossmann fold nucleotide-binding protein [General function prediction only]

 Score = 82.0 bits (203), Expect = 2e-19
 Identities = 58/189 (30%), Positives = 85/189 (44%), Gaps = 24/189 (12%)

Query: 3   PDHPHYLQSFELGGEIAR--LLDCTTWSGAGPGLMDAVTKGAMQAGKPVGGF-KVGKEAG 59
               +Y  + ELG E+A+  LL  T   G GPG+M+AV +GA++AG  V G         
Sbjct: 28  EPEEYYELARELGRELAKRGLLVIT---GGGPGVMEAVARGALEAGGLVVGILPGLLHEQ 84

Query: 60  EWTASNFHPYLPLETYLTCRFFSARKHGLIDCAVRNDSCDRTAVVALPGGVGTLDEMFEI 119
           E        Y  +E      F   RK  ++       S D  A + LPGG GTL+E+FE 
Sbjct: 85  EPP-----NYEVIELITGMDFA-ERKRAMVR------SAD--AFIVLPGGFGTLEELFEA 130

Query: 120 LALIQLERIGSELPVPFLVMNYDSFYKKLLDFLGDCEDWGTVA-KDEVASLWKICDSNSE 178
           L L Q       L  P L++N + F++ LL+FL D          +    L  + D   E
Sbjct: 131 LTLGQTGVHA--LTPPPLILNGNGFWEPLLEFL-DPHLIVEGLISEADRELLIVVDDAEE 187

Query: 179 ALSYLAEFY 187
           A+  + ++ 
Sbjct: 188 AIDAILKYL 196

Length = 205

>gnl|CDD|129813 TIGR00730, TIGR00730, TIGR00730 family protein

 Score = 62.1 bits (151), Expect = 3e-12
 Identities = 43/169 (25%), Positives = 69/169 (40%), Gaps = 20/169 (11%)

Query: 13  ELGGEIARLLDCTTWSGAGPGLMDAVTKGAMQAGKPVGGFKVG-KEAGEWTASNFHPYLP 71
           ELG  +A       + G   GLM A+   AM+ G    G  VG   +G ++    H  L 
Sbjct: 23  ELGAYLAGQGWGLVYGGGRVGLMGAIADAAMENG----GTAVGVNPSGLFSGEVVHQNLT 78

Query: 72  LETYLTCRFFSARKHGLIDCAVRNDSCDRTAVVALPGGVGTLDEMFEILALIQLERIGSE 131
               +       RK  + + A         A +A+PGG GTL+E+FE+L   QL   G  
Sbjct: 79  ELIEVN--GMHERKAMMAELA--------DAFIAMPGGFGTLEELFEVLTWAQL---GIH 125

Query: 132 LPVPFLVMNYDSFYKKLLDFLGDCEDWGTVAKDEVASLWKICDSNSEAL 180
                L  N +  +  L+++L      G +++  +  L  +     E +
Sbjct: 126 QKPIILF-NVNGHFDGLVEWLKYSIQEGFISESHL-KLIHVVSRPDELI 172

This model represents one branch of a subfamily of proteins of unknown function. Both PSI-BLAST and weak hits by This model show a low level of similarity to and suggest an evolutionary relationship of the subfamily to the DprA/Smf family of DNA-processing proteins involved in chromosomal transformation with foreign DNA. Both Aquifex aeolicus and Mycobacterium leprae have one member in each of two branches of this subfamily, suggesting that the branches may have distinct functions [Hypothetical proteins, Conserved]. Length = 178

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	209
TIGR00730	178	conserved hypothetical protein, DprA/Smf-related,	100.0
COG1611	205	Predicted Rossmann fold nucleotide-binding protein	100.0
PF03641	133	Lysine_decarbox: Possible lysine decarboxylase; In	100.0
TIGR00725	159	conserved hypothetical protein, DprA/Smf-related,	100.0
TIGR00732	220	dprA DNA protecting protein DprA. Disruption of th	98.94
PF02481	212	DNA_processg_A: DNA recombination-mediator protein	98.13
PRK10736	374	hypothetical protein; Provisional	97.42
COG0758	350	Smf Predicted Rossmann fold nucleotide-binding pro	96.08
PF12694	145	MoCo_carrier: Putative molybdenum carrier; InterPr	92.57
PF05014	113	Nuc_deoxyrib_tr: Nucleoside 2-deoxyribosyltransfer	92.01
PRK10565	508	putative carbohydrate kinase; Provisional	87.34

>TIGR00730 conserved hypothetical protein, DprA/Smf-related, family 2

Probab=100.00  E-value=4.7e-47  Score=311.33  Aligned_cols=165  Identities=24%  Similarity=0.389  Sum_probs=146.0

Q ss_pred             CcHHHHH-HHHHHHHHHHcCCCEEEccCCccHHHHHHHHHHhCCCcEEEEecCCCcccccccCCCCCCCccceeeccchH
Q 028413            4 DHPHYLQ-SFELGGEIARLLDCTTWSGAGPGLMDAVTKGAMQAGKPVGGFKVGKEAGEWTASNFHPYLPLETYLTCRFFS   82 (209)
Q Consensus         4 ~~p~y~~-A~~LG~~La~~g~~~V~~GG~~GlM~ava~ga~~~gG~viGi~~~~~~~~~~~~~~n~~l~~e~~i~~~~~~   82 (209)
                      .+|.|.+ |++||++||++|+.+|||||.+|+|+|+|+||+++||+|+||+|..-..+   +.+|++++  ..+.+++|+
T Consensus        13 ~~~~~~~~A~~lG~~la~~g~~lV~GGg~~GlM~a~a~ga~~~gG~viGi~p~~l~~~---~~~~~~~~--~~i~~~~~~   87 (178)
T TIGR00730        13 GNAAYKELAAELGAYLAGQGWGLVYGGGRVGLMGAIADAAMENGGTAVGVNPSGLFSG---EVVHQNLT--ELIEVNGMH   87 (178)
T ss_pred             CCcHHHHHHHHHHHHHHHCCCEEEECCChHhHHHHHHHHHHhcCCeEEEecchhhhhh---hccCCCCC--ceEEECCHH
Confidence            4666665 89999999999988888888899999999999999999999998532111   23599987  456779999


Q ss_pred             HHHHHhHhhhhhcCCCCccEEEEeCCCcccHHHHHHHHHHHHhhhhcCCCCccEEEEeCCccchHHHHHHHhHHHcCCCC
Q 028413           83 ARKHGLIDCAVRNDSCDRTAVVALPGGVGTLDEMFEILALIQLERIGSELPVPFLVMNYDSFYKKLLDFLGDCEDWGTVA  162 (209)
Q Consensus        83 ~Rk~~m~~~~~~~~~~~sDa~I~lPGG~GTLeEl~e~~t~~ql~~~~~~~~kPiilln~~g~w~~l~~~l~~~~~~gfi~  162 (209)
                      +||.+|++.|        ||||+||||+|||+|++++|+|.|++.+    +||++++|.+|||+++++|+++++++||++
T Consensus        88 ~Rk~~m~~~s--------da~I~lPGG~GTL~El~e~~~~~qlg~~----~kPiil~n~~g~~~~l~~~l~~~~~~gfi~  155 (178)
T TIGR00730        88 ERKAMMAELA--------DAFIAMPGGFGTLEELFEVLTWAQLGIH----QKPIILFNVNGHFDGLVEWLKYSIQEGFIS  155 (178)
T ss_pred             HHHHHHHHhC--------CEEEEcCCCcchHHHHHHHHHHHHcCCC----CCCEEEECCcchHHHHHHHHHHHHHCCCCC
Confidence            9999999987        9999999999999999999999999864    799999999999999999999999999999


Q ss_pred             hhcccccEEEeCCHHHHHHHHHhh
Q 028413          163 KDEVASLWKICDSNSEALSYLAEF  186 (209)
Q Consensus       163 ~~~~~~~i~~~~~~ee~~~~l~~~  186 (209)
                      +++ .+.+.+++|++|++++|++|
T Consensus       156 ~~~-~~~~~~~d~~~e~~~~i~~~  178 (178)
T TIGR00730       156 ESH-LKLIHVVSRPDELIEQVQNY  178 (178)
T ss_pred             HHH-cCcEEEcCCHHHHHHHHHhC
Confidence            975 47899999999999999764

This model represents one branch of a subfamily of proteins of unknown function. Both PSI-BLAST and weak hits by this model show a low level of similarity to and suggest an evolutionary relationship of the subfamily to the DprA/Smf family of DNA-processing proteins involved in chromosomal transformation with foreign DNA. Both Aquifex aeolicus and Mycobacterium leprae have one member in each of two branches of this subfamily, suggesting that the branches may have distinct functions.

>COG1611 Predicted Rossmann fold nucleotide-binding protein [General function prediction only]

Probab=100.00  E-value=1.3e-39  Score=272.53  Aligned_cols=168  Identities=32%  Similarity=0.466  Sum_probs=146.2

Q ss_pred             CcH-HHHHHHHHHHHHHHcCCCEEEccCCccHHHHHHHHHHhCCCcEEEEecCCCcccccccCCCCCCCccceeeccchH
Q 028413            4 DHP-HYLQSFELGGEIARLLDCTTWSGAGPGLMDAVTKGAMQAGKPVGGFKVGKEAGEWTASNFHPYLPLETYLTCRFFS   82 (209)
Q Consensus         4 ~~p-~y~~A~~LG~~La~~g~~~V~~GG~~GlM~ava~ga~~~gG~viGi~~~~~~~~~~~~~~n~~l~~e~~i~~~~~~   82 (209)
                      .++ .|+.|++||++||++| .+|||||++|+|||+|+||+++||.|+||+|.......   ++|++++  .++++.+|+
T Consensus        28 ~~~~~~~~a~~lg~~la~~g-~~V~tGG~~GiMea~~~gA~~~gg~~vGi~p~~~~~~e---~~~~~~~--~l~~~~~~~  101 (205)
T COG1611          28 EPEEYYELARELGRELAKRG-LLVITGGGPGVMEAVARGALEAGGLVVGILPGLLHEQE---PPNYEVI--ELITGMDFA  101 (205)
T ss_pred             CCHHHHHHHHHHHHHHHhCC-cEEEeCCchhhhhHHHHHHHHcCCeEEEecCCCchhhc---cCccccc--eeeecCCHH
Confidence            444 6777999999999996 89999999999999999999999999999996543211   2355554  567789999


Q ss_pred             HHHHHhHhhhhhcCCCCccEEEEeCCCcccHHHHHHHHHHHHhhhhcCCCCccEEEEeCCccchHHHHHHH-hHHHcCCC
Q 028413           83 ARKHGLIDCAVRNDSCDRTAVVALPGGVGTLDEMFEILALIQLERIGSELPVPFLVMNYDSFYKKLLDFLG-DCEDWGTV  161 (209)
Q Consensus        83 ~Rk~~m~~~~~~~~~~~sDa~I~lPGG~GTLeEl~e~~t~~ql~~~~~~~~kPiilln~~g~w~~l~~~l~-~~~~~gfi  161 (209)
                      +||..|+++|        ||||++|||+||++|+|++|+|.|++.+.  ..+|+++++.++||+++.++++ +++.++++
T Consensus       102 ~Rk~~~~~~a--------da~V~~pGG~GTleEl~e~lt~~q~g~~~--l~~~~~i~~~~~~~~~~~~~~d~~~i~~~~i  171 (205)
T COG1611         102 ERKRAMVRSA--------DAFIVLPGGFGTLEELFEALTLGQTGVHA--LTPPPLILNGNGFWEPLLEFLDPHLIVEGLI  171 (205)
T ss_pred             HHHHHHHHhC--------CEEEEeCCCcchHHHHHHHHHHhhCCccc--CCCCcEEecchHHHHHHHHHhCHHHHHhhcC
Confidence            9999999998        99999999999999999999999998753  2577778898999999999999 89999999


Q ss_pred             ChhcccccEEEeCCHHHHHHHHHhhhc
Q 028413          162 AKDEVASLWKICDSNSEALSYLAEFYD  188 (209)
Q Consensus       162 ~~~~~~~~i~~~~~~ee~~~~l~~~~~  188 (209)
                      +++. .+++.+++|++++++.+.+++.
T Consensus       172 ~~~~-~~~~~~~~~~~~~~~~~~~~~~  197 (205)
T COG1611         172 SEAD-RELLIVVDDAEEAIDAILKYLP  197 (205)
T ss_pred             Chhh-hhheeeecCHHHHHHHHHHhcc
Confidence            9864 5888999999999999999854

>PF03641 Lysine_decarbox: Possible lysine decarboxylase; InterPro: IPR005269 This entry represents a cytokinin-activating enzyme working in the direct activation pathway

Probab=100.00  E-value=8.4e-38  Score=245.32  Aligned_cols=132  Identities=39%  Similarity=0.604  Sum_probs=116.4

Q ss_pred             HHHHHHHHHhCCCcEEEEecCCCcc-cccccCCCCCCCccceeeccchHHHHHHhHhhhhhcCCCCccEEEEeCCCcccH
Q 028413           35 MDAVTKGAMQAGKPVGGFKVGKEAG-EWTASNFHPYLPLETYLTCRFFSARKHGLIDCAVRNDSCDRTAVVALPGGVGTL  113 (209)
Q Consensus        35 M~ava~ga~~~gG~viGi~~~~~~~-~~~~~~~n~~l~~e~~i~~~~~~~Rk~~m~~~~~~~~~~~sDa~I~lPGG~GTL  113 (209)
                      |+|+|+||+++||+|+||+|..... +   +.+|++++  .++++++|++||..|++.|        ||||+||||+|||
T Consensus         1 M~a~~~ga~~~gG~viGi~p~~~~~~~---~~~~~~~~--~~~~~~~~~~Rk~~m~~~s--------da~I~lPGG~GTl   67 (133)
T PF03641_consen    1 MGAVAKGAKEAGGRVIGIIPEFLFPFE---EPPNPYVT--ELIIVDDMFERKEIMIESS--------DAFIALPGGIGTL   67 (133)
T ss_dssp             HHHHHHHHHHTTTTEEEEEETTGTTTT---TTCCTTSS--EEEEESSHHHHHHHHHHHE--------SEEEEES-SHHHH
T ss_pred             CcHHHHHHHHcCCeEEEEecCcccccc---ccCCcccC--ceeEeCChHHHHHHHHHhC--------CEEEEEecCCchH
Confidence            9999999999999999999864322 2   24599987  5677899999999999997        9999999999999


Q ss_pred             HHHHHHHHHHHhhhhcCCCCccEEEEeCCccchHHHHHHHhHHHcCCCChhcccccEEEeCCHHHHHHHH
Q 028413          114 DEMFEILALIQLERIGSELPVPFLVMNYDSFYKKLLDFLGDCEDWGTVAKDEVASLWKICDSNSEALSYL  183 (209)
Q Consensus       114 eEl~e~~t~~ql~~~~~~~~kPiilln~~g~w~~l~~~l~~~~~~gfi~~~~~~~~i~~~~~~ee~~~~l  183 (209)
                      +|+|++|+|+|++.+   .++||||+|.+|||+++++++++++++||+++++. +.+.+++|++|++++|
T Consensus        68 ~El~~~~~~~~l~~~---~~~Piil~~~~g~w~~l~~~l~~~~~~g~i~~~~~-~~~~~~d~~~e~~~~i  133 (133)
T PF03641_consen   68 DELFEALTLMQLGRH---NKVPIILLNIDGFWDPLLEFLDRMIEEGFISPDDL-DLLHFVDDPEEALEYI  133 (133)
T ss_dssp             HHHHHHHHHHHTTSS---TS-EEEEEECGGCCHHHHHHHHHHHHTTSSSHHHH-CCEEEESSHHHHHHHH
T ss_pred             HHHHHHHHHHhhccc---cCCCEEEeCCcchHHHHHHHHHHHHHCCCCCHHHC-CeEEEeCCHHHHHhhC
Confidence            999999999999875   34599999999999999999999999999999864 7999999999999875

It is a phosphoribohydrolase that converts inactive cytokinin nucleotides to the biologically active free-base forms [, ]. The proteins in this entry belong to the LOG family of proteins.; PDB: 1YDH_B 2Q4D_A 1RCU_C 1WEH_B 3SBX_F 3BQ9_B 2PMB_D 3GH1_D 1WEK_C 3QUA_A ....

>TIGR00725 conserved hypothetical protein, DprA/Smf-related, family 1

Probab=100.00  E-value=1.9e-35  Score=238.60  Aligned_cols=146  Identities=26%  Similarity=0.308  Sum_probs=121.0

Q ss_pred             CcHHHHH-HHHHHHHHHHcCCCEEEccCCccHHHHHHHHHHhCCCcEEEEecCCCcccccccCCCCCCCccceeeccchH
Q 028413            4 DHPHYLQ-SFELGGEIARLLDCTTWSGAGPGLMDAVTKGAMQAGKPVGGFKVGKEAGEWTASNFHPYLPLETYLTCRFFS   82 (209)
Q Consensus         4 ~~p~y~~-A~~LG~~La~~g~~~V~~GG~~GlM~ava~ga~~~gG~viGi~~~~~~~~~~~~~~n~~l~~e~~i~~~~~~   82 (209)
                      .+|.|.+ |++||++||++|+ .|++||+.|+|+++++||+++||+|+||+|....      ..|++++  ..++...++
T Consensus        12 ~~~~~~~~A~~lg~~La~~g~-~lv~Gg~~GlM~a~a~ga~~~gg~viGVlp~~l~------~~~~~~~--~~i~~~~~~   82 (159)
T TIGR00725        12 KSEELYEIAYRLGKELAKKGH-ILINGGRTGVMEAVSKGAREAGGLVVGILPDEDF------AGNPYLT--IKVKTGMNF   82 (159)
T ss_pred             CChHHHHHHHHHHHHHHHCCC-EEEcCCchhHHHHHHHHHHHCCCeEEEECChhhc------cCCCCce--EEEECCCcc
Confidence            4677776 8999999999975 6677999999999999999999999999985321      2477775  445555558


Q ss_pred             HHHHHhHhhhhhcCCCCccEEEEeCCCcccHHHHHHHHHHHHhhhhcCCCCccEEEEeCCccchHHHHHHHhHHHcCCCC
Q 028413           83 ARKHGLIDCAVRNDSCDRTAVVALPGGVGTLDEMFEILALIQLERIGSELPVPFLVMNYDSFYKKLLDFLGDCEDWGTVA  162 (209)
Q Consensus        83 ~Rk~~m~~~~~~~~~~~sDa~I~lPGG~GTLeEl~e~~t~~ql~~~~~~~~kPiilln~~g~w~~l~~~l~~~~~~gfi~  162 (209)
                      +||++|++.|        ||||++|||+|||+|+|++|++          +||++++|.+|||+++++++   ..++++.
T Consensus        83 ~Rk~~m~~~s--------da~IvlpGG~GTL~E~~~a~~~----------~kpv~~l~~~g~~~~~l~~~---~~~~~~~  141 (159)
T TIGR00725        83 ARNFILVRSA--------DVVVSVGGGYGTAIEILGAYAL----------GGPVVVLRGTGGWTDRLSQV---LIEGVYL  141 (159)
T ss_pred             hHHHHHHHHC--------CEEEEcCCchhHHHHHHHHHHc----------CCCEEEEECCCcchHHHHHH---Hhccccc
Confidence            8999999997        9999999999999999999883          58999999999999998865   4445544


Q ss_pred             hhcccccEEEeCCHHHHHHHH
Q 028413          163 KDEVASLWKICDSNSEALSYL  183 (209)
Q Consensus       163 ~~~~~~~i~~~~~~ee~~~~l  183 (209)
                      ++    .+.+++|++|+++.+
T Consensus       142 ~~----~~~~~~~~~e~~~~~  158 (159)
T TIGR00725       142 DE----RVIVEITPAEAVKLA  158 (159)
T ss_pred             cc----eeEecCCHHHHHHhh
Confidence            42    478999999999864

This model represents one branch of a subfamily of uncharacterized proteins. Both PSI-BLAST and weak hits by this model show a low level of similarity and suggest an evolutionary relationship of the subfamily to the DprA/Smf family of DNA-processing proteins involved in chromosomal transformation with foreign DNA. Both Aquifex aeolicus and Mycobacterium leprae have one member in each of two branches of this subfamily, suggesting the branches may have distinct functions. This family is one of several families within the scope of PFAM model pfam03641, several members of which are annotated as lysine decarboxylases. That larger family, and the branch described by this model, have a well-conserved motif PGGXGTXXE.

>TIGR00732 dprA DNA protecting protein DprA

Probab=98.94  E-value=3.9e-08  Score=83.42  Aligned_cols=141  Identities=16%  Similarity=0.087  Sum_probs=97.2

Q ss_pred             HHHHHHHHHHcCCCEEEccCCccHHHHHHHHHHhCCCcEEEEecC-CC---cccc-------ccc---CCCCCCCcccee
Q 028413           11 SFELGGEIARLLDCTTWSGAGPGLMDAVTKGAMQAGKPVGGFKVG-KE---AGEW-------TAS---NFHPYLPLETYL   76 (209)
Q Consensus        11 A~~LG~~La~~g~~~V~~GG~~GlM~ava~ga~~~gG~viGi~~~-~~---~~~~-------~~~---~~n~~l~~e~~i   76 (209)
                      |+++++.|+++ ++.|++|+..|++.++.++|+++||.+|+|++. +.   |.+.       ...   ...+|.+... .
T Consensus        63 a~~l~~~l~~~-g~~IVSG~A~GiD~~ah~~al~~~g~tIaVl~~gld~~yp~~n~~l~~~i~~~gglliSe~p~~~~-~  140 (220)
T TIGR00732        63 TRKLAEELAKN-GVTIVSGLALGIDGIAHKAALKVNGRTIAVLGTGLDQIYPRQNSKLAAKIAENGGLLLSEYPPDTK-P  140 (220)
T ss_pred             HHHHHHHHHhC-CCEEEcCchhhHHHHHHHHHHHcCCCEEEEECCCCccCCchhhHHHHHHHHHcCCEEEEecCCCCC-C
Confidence            79999999999 568889999999999999999999999999863 21   1100       000   0112222100 1


Q ss_pred             eccchHHHHHHhHhhhhhcCCCCccEEEEeCCC--cccHHHHHHHHHHHHhhhhcCCCCccEEEEeCCccchHHHHHHHh
Q 028413           77 TCRFFSARKHGLIDCAVRNDSCDRTAVVALPGG--VGTLDEMFEILALIQLERIGSELPVPFLVMNYDSFYKKLLDFLGD  154 (209)
Q Consensus        77 ~~~~~~~Rk~~m~~~~~~~~~~~sDa~I~lPGG--~GTLeEl~e~~t~~ql~~~~~~~~kPiilln~~g~w~~l~~~l~~  154 (209)
                      ....|..|++++..+|        |++|++-.+  .||+.+.-.++.+          .|||.++- ...+++..+-...
T Consensus       141 ~~~~f~~RNriia~ls--------~~vivve~~~~sGtl~ta~~A~~~----------gr~v~~~p-g~~~~~~~~G~~~  201 (220)
T TIGR00732       141 IKYNFPKRNRIISGLS--------RAVLVVEAPLKSGALITARYALEQ----------GREVFAYP-GDLNSPESDGCHK  201 (220)
T ss_pred             CcccHHHHHHHHHHhc--------CEEEEEECCCCCchHHHHHHHHHh----------CCcEEEEc-CCCCCccchHHHH
Confidence            1235689999999887        999999997  7999887666543          58999884 2355555555566


Q ss_pred             HHHcCCCChhcccccEEEeCCHHHHHHH
Q 028413          155 CEDWGTVAKDEVASLWKICDSNSEALSY  182 (209)
Q Consensus       155 ~~~~gfi~~~~~~~~i~~~~~~ee~~~~  182 (209)
                      ++++|.          ..+.+++++++.
T Consensus       202 Li~~GA----------~~i~~~~d~~~~  219 (220)
T TIGR00732       202 LIEQGA----------ALITSAKDILET  219 (220)
T ss_pred             HHHCCC----------EEECCHHHHHHh
Confidence            777662          135677777653

Disruption of this gene in both Haemophilus influenzae and Helicobacter pylori drastically reduces the efficiency of transformation with exogenous DNA, but with different levels of effect on chromosomal (linear) and plasmid (circular) DNA. This difference suggests the DprA is not active in recombination, and it has been shown not to affect DNA binding, leaving the intermediate step in natural transformation, DNA processing. In Strep. pneumoniae, inactivation of dprA had no effect on the uptake of DNA. All of these data indicated that DprA is required at a later stage in transformation. Subsequently DprA and RecA were both shown in S. pneumoniae to be required to protect incoming ssDNA from immediate degradation. Role of DprA in non-transformable species is not known. The gene symbol smf was assigned in E. coli, but without assignment of function.

>PF02481 DNA_processg_A: DNA recombination-mediator protein A; InterPro: IPR003488 The SMF family, of DNA processing chain A, dprA, are a group of bacterial proteins

Probab=98.13  E-value=4.7e-05  Score=64.23  Aligned_cols=128  Identities=21%  Similarity=0.176  Sum_probs=72.8

Q ss_pred             HHHHHHHHHHcCCCEEEccCCccHHHHHHHHHHhCCCcEEEEecC-CC---cccc-------ccc---CCCCCCCcccee
Q 028413           11 SFELGGEIARLLDCTTWSGAGPGLMDAVTKGAMQAGKPVGGFKVG-KE---AGEW-------TAS---NFHPYLPLETYL   76 (209)
Q Consensus        11 A~~LG~~La~~g~~~V~~GG~~GlM~ava~ga~~~gG~viGi~~~-~~---~~~~-------~~~---~~n~~l~~e~~i   76 (209)
                      |+++++.|+++ +..|++|+-.|+-.++.++|+++||.+|.|++. ++   |.+.       .+.   -..+|.+. ...
T Consensus        63 a~~l~~~l~~~-g~~vvSGlA~GiD~~ah~~al~~~g~tIaVl~~gl~~~yP~~n~~l~~~i~~~~glliSe~~p~-~~~  140 (212)
T PF02481_consen   63 AKKLARELAKA-GIVVVSGLAKGIDAAAHRGALDAGGPTIAVLACGLDNIYPKENRELAERILDEGGLLISEYPPG-TKP  140 (212)
T ss_dssp             HHHHHHHHHHH-T-EEEE---TTHHHHHHHHHTTT---EEEE-SS-TTS-SSGGGHHHHHHHHHTT-EEEE-S-TT----
T ss_pred             HHHHHHHHhhC-CEEEEcCCCCCHHHHHHHHHHHccCCEEEEECCCcccccchhhHHHHHHHHhcCcEEEeCCCCC-CCc
Confidence            79999999999 568999999999999999999999999999862 21   1110       000   01122221 112


Q ss_pred             eccchHHHHHHhHhhhhhcCCCCccEEEEeC--CCcccHHHHHHHHHHHHhhhhcCCCCccEEEEeCCccchHHHHHHHh
Q 028413           77 TCRFFSARKHGLIDCAVRNDSCDRTAVVALP--GGVGTLDEMFEILALIQLERIGSELPVPFLVMNYDSFYKKLLDFLGD  154 (209)
Q Consensus        77 ~~~~~~~Rk~~m~~~~~~~~~~~sDa~I~lP--GG~GTLeEl~e~~t~~ql~~~~~~~~kPiilln~~g~w~~l~~~l~~  154 (209)
                      ....|.+|++++.-+|        |+.|++-  =..||+.-+-.++.+          .|||.++. ...+++..+.-..
T Consensus       141 ~~~~f~~RNRiiaaLs--------~~~vvvea~~~sGt~~ta~~A~~~----------gr~v~~vp-~~~~~~~~~G~~~  201 (212)
T PF02481_consen  141 SRWRFPERNRIIAALS--------DAVVVVEAGEKSGTLHTARFALEQ----------GRPVFAVP-GPIDDPNSEGNNE  201 (212)
T ss_dssp             -TTHHHHHHHHHHHH---------S-EEE----TT-THHHHHHHHHHH----------T--EEE-----TT-GGGHHHHH
T ss_pred             ccccChHHHHHHHHhC--------CeEEEEecCCCChHHHHHHHHHHc----------CCeEEEEe-CCCCCcccHHHHH
Confidence            2346789999999987        8888875  456788776655543          47998874 3466666666667


Q ss_pred             HHHcC
Q 028413          155 CEDWG  159 (209)
Q Consensus       155 ~~~~g  159 (209)
                      ++++|
T Consensus       202 Li~~G  206 (212)
T PF02481_consen  202 LIKEG  206 (212)
T ss_dssp             HHHTT
T ss_pred             HHHcC
Confidence            77776

In Helicobacter pylori, dprA is required for natural chromosomal and plasmid transformation []. It has now been shown that DprA is found to bind cooperatively to single-stranded DNA (ssDNA) and to interact with RecA. In the process, DprA-RecA-ssDNA filaments are produced and these filaments catalyse the homology-dependent formation of joint molecules. While the Escherichia coli SSB protein limits access of RecA to ssDNA, DprA alleviates this barrier. It is proposed that DprA is a new member of the recombination-mediator protein family, dedicated to natural bacterial transformation [].; GO: 0009294 DNA mediated transformation; PDB: 3MAJ_A.

>PRK10736 hypothetical protein; Provisional

Probab=97.42  E-value=0.0065  Score=55.50  Aligned_cols=144  Identities=16%  Similarity=0.046  Sum_probs=94.9

Q ss_pred             HHHHHHHHHHcCCCEEEccCCccHHHHHHHHHHhCCCcEEEEec-CCC---ccc-------cccc---CCCCCCCcccee
Q 028413           11 SFELGGEIARLLDCTTWSGAGPGLMDAVTKGAMQAGKPVGGFKV-GKE---AGE-------WTAS---NFHPYLPLETYL   76 (209)
Q Consensus        11 A~~LG~~La~~g~~~V~~GG~~GlM~ava~ga~~~gG~viGi~~-~~~---~~~-------~~~~---~~n~~l~~e~~i   76 (209)
                      ++++++.||++ +.+|+.|+--|+=.++.++|+++||.+|+|+. ++.   |.+       ...+   -..+|.+. .-.
T Consensus       126 ~~~l~~~la~~-g~~IVSGlA~GiD~~AH~~aL~~~g~TIaVlg~Gld~~YP~~n~~L~~~I~~~~G~liSEyp~~-~~p  203 (374)
T PRK10736        126 GRLFCEELAKN-GLTITSGLARGIDGVAHRAALQAGGKTIAVLGNGLENIYPRRHARLAESIIEQGGALVSEFPLD-TPP  203 (374)
T ss_pred             HHHHHHHHHHC-CCEEECcchhhHHHHHHHHHHHcCCCEEEEECCCCCccCCHhHHHHHHHHHhcCCEEEECCCCC-CCC
Confidence            79999999999 56888999999999999999999999999974 111   111       0000   00111110 001


Q ss_pred             eccchHHHHHHhHhhhhhcCCCCccEEEEeCC--CcccHHHHHHHHHHHHhhhhcCCCCccEEEEeCCccchHHHHHHHh
Q 028413           77 TCRFFSARKHGLIDCAVRNDSCDRTAVVALPG--GVGTLDEMFEILALIQLERIGSELPVPFLVMNYDSFYKKLLDFLGD  154 (209)
Q Consensus        77 ~~~~~~~Rk~~m~~~~~~~~~~~sDa~I~lPG--G~GTLeEl~e~~t~~ql~~~~~~~~kPiilln~~g~w~~l~~~l~~  154 (209)
                      ...+|..|++++.-+|        +++|++--  ..|||.=.-.++..          .|+|..+- ...+++.-+-..+
T Consensus       204 ~~~~Fp~RNRIIagLS--------~~viVvEA~~kSGsliTA~~Al~~----------gR~VfavP-G~i~~~~s~G~n~  264 (374)
T PRK10736        204 LAANFPRRNRIISGLS--------KGVLVVEAALRSGSLVTARCALEQ----------GRDVFALP-GPIGNPGSEGPHW  264 (374)
T ss_pred             ChhhhhHhhhHHHHhC--------CeEEEEEeCCCCchHHHHHHHHHh----------CCeEEEEc-CCCCCccchhHHH
Confidence            1246889999999887        88888743  45676554434332          58988883 3355665556666


Q ss_pred             HHHcCCCChhcccccEEEeCCHHHHHHHHHh
Q 028413          155 CEDWGTVAKDEVASLWKICDSNSEALSYLAE  185 (209)
Q Consensus       155 ~~~~gfi~~~~~~~~i~~~~~~ee~~~~l~~  185 (209)
                      ++++|.          ..+.+++++++.+..
T Consensus       265 LI~~GA----------~lv~~~~Di~~~l~~  285 (374)
T PRK10736        265 LIKQGA----------YLVTSPEDILENLQF  285 (374)
T ss_pred             HHHCCC----------EEeCCHHHHHHHhhh
Confidence            776652          256788888888743

>COG0758 Smf Predicted Rossmann fold nucleotide-binding protein involved in DNA uptake [DNA replication, recombination, and repair / Intracellular trafficking and secretion]

Probab=96.08  E-value=0.033  Score=50.52  Aligned_cols=133  Identities=17%  Similarity=0.115  Sum_probs=84.6

Q ss_pred             HHHHH--HHHHHHHHHHcCCCEEEccCCccHHHHHHHHHHhCCCcEEEEecC-CC---ccc-------cccc--CCCCCC
Q 028413            6 PHYLQ--SFELGGEIARLLDCTTWSGAGPGLMDAVTKGAMQAGKPVGGFKVG-KE---AGE-------WTAS--NFHPYL   70 (209)
Q Consensus         6 p~y~~--A~~LG~~La~~g~~~V~~GG~~GlM~ava~ga~~~gG~viGi~~~-~~---~~~-------~~~~--~~n~~l   70 (209)
                      ..|-.  ++.|++.|+++ +..|++|+-.|+=.++.++|++++|++|+|+.. .+   |.+       ...+  -.++|.
T Consensus       123 S~~g~~~~~~~a~~L~~~-g~~IvSGlA~GID~~AH~aaL~~~G~TiaVl~~Gld~iYP~~n~~l~~~i~~~g~liSEyp  201 (350)
T COG0758         123 SKYGLDYTRDLAEYLAQN-GITIVSGLARGIDTEAHKAALNAGGKTIAVLATGLDKIYPRENIKLAEKIAENGLLISEYP  201 (350)
T ss_pred             CHhHHHHHHHHHHHHHhC-CeEEEecCcceecHHHHHHHHHcCCcEEEEEcCCCCccCChhhHHHHHHHHhcCeEEeecC
Confidence            34543  79999999999 568889999999999999999999999999742 11   110       0000  112333


Q ss_pred             CccceeeccchHHHHHHhHhhhhhcCCCCccEEEEeCCC--cccHHHHHHHHHHHHhhhhcCCCCccEEEEeCCccchHH
Q 028413           71 PLETYLTCRFFSARKHGLIDCAVRNDSCDRTAVVALPGG--VGTLDEMFEILALIQLERIGSELPVPFLVMNYDSFYKKL  148 (209)
Q Consensus        71 ~~e~~i~~~~~~~Rk~~m~~~~~~~~~~~sDa~I~lPGG--~GTLeEl~e~~t~~ql~~~~~~~~kPiilln~~g~w~~l  148 (209)
                      +.. -....+|..|+++..-+|        +++|+.-.+  .|+|.=.-.++..          .+.|..+- ....++.
T Consensus       202 p~~-~p~~~~Fp~RNRiIagLS--------~gvlVvEA~~kSGSLiTA~~Aleq----------gR~VfavP-g~~~~~~  261 (350)
T COG0758         202 PDT-EPNKGNFPRRNRLIAGLS--------DGVLVVEAGLKSGSLITAKYALEQ----------GRDVFAVP-GSIDNPR  261 (350)
T ss_pred             CCC-CcccccchHHHHHHHHhc--------CceEEEecCcccccHHHHHHHHHc----------CCeeEEcC-CCccccc
Confidence            311 122247899999998887        998888665  5777655544443          35565553 2233443


Q ss_pred             HHHHHhHHHcC
Q 028413          149 LDFLGDCEDWG  159 (209)
Q Consensus       149 ~~~l~~~~~~g  159 (209)
                      -+-...++++|
T Consensus       262 s~G~~~LI~~G  272 (350)
T COG0758         262 SEGCNKLIKEG  272 (350)
T ss_pred             ccchHHHHHcc
Confidence            33334456665

>PF12694 MoCo_carrier: Putative molybdenum carrier; InterPro: IPR024755 The structure of proteins in this family contain central beta strands with flanking alpha helices

Probab=92.57  E-value=1.6  Score=34.84  Aligned_cols=95  Identities=19%  Similarity=0.178  Sum_probs=49.0

Q ss_pred             EEccCCccHHHHHHHHHHhCCCcEEEEecCCCcccccccCCCCCCCccceeeccchHHHHHHhHhhhhhcCCCCccEEEE
Q 028413           26 TWSGAGPGLMDAVTKGAMQAGKPVGGFKVGKEAGEWTASNFHPYLPLETYLTCRFFSARKHGLIDCAVRNDSCDRTAVVA  105 (209)
Q Consensus        26 V~~GG~~GlM~ava~ga~~~gG~viGi~~~~~~~~~~~~~~n~~l~~e~~i~~~~~~~Rk~~m~~~~~~~~~~~sDa~I~  105 (209)
                      |++||-.|+=.|+-+.|+++|-..-|-.|.-...|... -+..|-=  ......+...|-+..++-|        |+-++
T Consensus         1 IiSGGQTGvDRAALDaAi~~gi~~GGWcP~GR~aEDG~-ip~~Y~L--~E~~~~~Y~~RT~~NV~Ds--------DgTlI   69 (145)
T PF12694_consen    1 IISGGQTGVDRAALDAAIAHGIPHGGWCPKGRRAEDGP-IPARYPL--QETPSSGYRQRTEWNVRDS--------DGTLI   69 (145)
T ss_dssp             EE----TTHHHHHHHHHHHTT--EE-EE-GGG--TTSS---TTS----EE-SS--HHHHHHHHHHTS--------SEEEE
T ss_pred             CccCccccHHHHHHHHHHHcCCCccCcCCCCcccccCc-CCccccc--eecCCCCHHHHHHhhhhhc--------CeEEE
Confidence            67999999999999999999987778877321112110 1122311  1233456789999999876        99888


Q ss_pred             eCCCc---ccHHHHHHHHHHHHhhhhcCCCCccEEEEeC
Q 028413          106 LPGGV---GTLDEMFEILALIQLERIGSELPVPFLVMNY  141 (209)
Q Consensus       106 lPGG~---GTLeEl~e~~t~~ql~~~~~~~~kPiilln~  141 (209)
                      |-=|-   ||  ++...++.    +    +.||+.+++.
T Consensus        70 ~~~g~l~GGt--~lT~~~a~----~----~~KP~l~i~~   98 (145)
T PF12694_consen   70 FTRGELTGGT--ALTVEFAR----K----HGKPCLHIDL   98 (145)
T ss_dssp             EESSS--HHH--HHHHHHHH----H----TT--EEEETS
T ss_pred             EecCCCCcHH--HHHHHHHH----H----hCCCEEEEec
Confidence            76443   33  33322222    2    3699988864

The structure is similar to that of a molybdenum cofactor carrier protein.; PDB: 3IMK_A.

>PF05014 Nuc_deoxyrib_tr: Nucleoside 2-deoxyribosyltransferase; InterPro: IPR007710 Nucleoside 2-deoxyribosyltransferase (2

Probab=92.01  E-value=0.3  Score=36.52  Aligned_cols=44  Identities=27%  Similarity=0.212  Sum_probs=33.7

Q ss_pred             hHHHHHHhHhhhhhcCCCCccEEEEeCCC----cccHHHHHHHHHHHHhhhhcCCCCccEEEEeCC
Q 028413           81 FSARKHGLIDCAVRNDSCDRTAVVALPGG----VGTLDEMFEILALIQLERIGSELPVPFLVMNYD  142 (209)
Q Consensus        81 ~~~Rk~~m~~~~~~~~~~~sDa~I~lPGG----~GTLeEl~e~~t~~ql~~~~~~~~kPiilln~~  142 (209)
                      ..+|....++.|        |++|+.-.+    .||.-|+..+..+          .|||+++..+
T Consensus        51 i~~~d~~~i~~~--------D~via~l~~~~~d~Gt~~ElG~A~al----------gkpv~~~~~d   98 (113)
T PF05014_consen   51 IFERDLEGIREC--------DIVIANLDGFRPDSGTAFELGYAYAL----------GKPVILLTED   98 (113)
T ss_dssp             HHHHHHHHHHHS--------SEEEEEECSSS--HHHHHHHHHHHHT----------TSEEEEEECC
T ss_pred             HHHHHHHHHHHC--------CEEEEECCCCCCCCcHHHHHHHHHHC----------CCEEEEEEcC
Confidence            355666666665        999998877    9999999877654          5899999753

4.2.6 from EC) catalyses the cleavage of the glycosidic bonds of 2-deoxyribonucleosides. Nucleoside 2-deoxyribosyltransferases can be divided into two groups based on their substrate specificity: class I enzymes are specific for the transfer of deoxyribose between two purines, while class II enzymes will transfer the deoxyribose between either purines or pyrimidines. The structure of the class I [] and class II [] enzymes are very similar. In class I enzymes, the purine base shields the active site from solvent, which the smaller pyrimidine base cannot do, while in class II enzymes the active site is shielded by a loop (residues 48-62). Both classes of enzymes are found in various Lactobacillus species and participate in nucleoside recycling in these microorganisms. This entry represents both classes of enzymes.; GO: 0050144 nucleoside deoxyribosyltransferase activity, 0070694 deoxyribonucleoside 5'-monophosphate N-glycosidase activity, 0009159 deoxyribonucleoside monophosphate catabolic process; PDB: 1S2L_A 1S2D_C 1S2I_A 1S3F_B 1S2G_C 2A0K_A 2F67_A 2F64_B 2F62_A 2F2T_A ....

>PRK10565 putative carbohydrate kinase; Provisional

Probab=87.34  E-value=3.9  Score=38.92  Aligned_cols=36  Identities=25%  Similarity=0.341  Sum_probs=22.0

Q ss_pred             ccEEEEeCCCcccHHHHHHHHHHHHhhhhcCCCCccEEEEeCCc
Q 028413          100 RTAVVALPGGVGTLDEMFEILALIQLERIGSELPVPFLVMNYDS  143 (209)
Q Consensus       100 sDa~I~lPGG~GTLeEl~e~~t~~ql~~~~~~~~kPiilln~~g  143 (209)
                      +|++++=|| .|+-++..+++..  +..    .++|+ +++.++
T Consensus       321 ~~a~viGpG-lg~~~~~~~~~~~--~~~----~~~P~-VLDAda  356 (508)
T PRK10565        321 ADVVVIGPG-LGQQEWGKKALQK--VEN----FRKPM-LWDADA  356 (508)
T ss_pred             CCEEEEeCC-CCCCHHHHHHHHH--HHh----cCCCE-EEEchH
Confidence            389888776 7886665444422  211    35786 677666

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	209
1wek_A	217	Crystal Structure Of The Conserved Hypothetical Pro		2e-07

>pdb|1WEK|A Chain A, Crystal Structure Of The Conserved Hypothetical Protein Tt1465 From Thermus Thermophilus Hb8 Length = 217

Iteration: 1
 Score = 52.4 bits (124), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 55/184 (29%), Positives = 83/184 (45%), Gaps = 22/184 (11%)
Query: 1   MGPDHPHYLQSFELGGEIARLLDCTTWSGAGPGLMDAVTKGAMQAGKPVGGFKVGKEAGE 60
            G  HP Y   + LG  +A         G   G+ +AV +GA +AG    G  VG     
Sbjct: 48  FGEGHPAYEAGYRLGRALAEAGFGVVTGGGP-GVXEAVNRGAYEAG----GVSVGLNIEL 102
Query: 61  WTASNFHPYLPLETY-LTCRFFSARKHGLIDCAVRNDSCDRTAVVALPGGVGTLDEMFEI 119
                 +PY   +T+ L+ R+F  RK   +  AV          V LPGG GTLDE+ E+
Sbjct: 103 PHEQKPNPY---QTHALSLRYFFVRKVLFVRYAV--------GFVFLPGGFGTLDELSEV 151
Query: 120 LALIQLERIGSELPVPFLVMNYDSFYKKLLDFLGDCEDWGTVAKDEVASLWKICDSNSEA 179
           L L+Q E++    PV  L   Y   ++ L+ +L    D   V  +++  L+++ D   E 
Sbjct: 152 LVLLQTEKV-HRFPVFLLDRGY---WEGLVRWLAFLRDQKAVGPEDL-QLFRLTDEPEEV 206
Query: 180 LSYL 183
           +  L
Sbjct: 207 VQAL 210

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	209
1wek_A	217	Hypothetical protein TT1465; rossman fold, structu	4e-34
1weh_A	171	Conserved hypothetical protein TT1887; rossman fol	1e-28
1rcu_A	195	Conserved hypothetical protein VT76; structural ge	1e-23
3gh1_A	462	Predicted nucleotide-binding protein; structural g	1e-21
2iz6_A	176	Molybdenum cofactor carrier protein; metal transpo	6e-20
3bq9_A	460	Predicted rossmann fold nucleotide-binding domain	2e-19
3sbx_A	189	Putative uncharacterized protein; structural genom	4e-18
1ydh_A	216	AT5G11950; structural genomics, protein structure	8e-18
2a33_A	215	Hypothetical protein; structural genomics, protein	1e-17
1t35_A	191	Hypothetical protein YVDD, putative lysine decarbo	2e-17
3qua_A	199	Putative uncharacterized protein; structural genom	2e-17
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	4e-05

>1wek_A Hypothetical protein TT1465; rossman fold, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; 2.20A {Thermus thermophilus} SCOP: c.129.1.1 Length = 217

 Score =  120 bits (302), Expect = 4e-34
 Identities = 54/194 (27%), Positives = 84/194 (43%), Gaps = 36/194 (18%)

Query: 2   GPDHPHYLQSFELGGEIARLLDCTTWSGAGPGLMDAVTKGAMQAGKPVGGFKVGKEAGEW 61
           G  HP Y   + LG  +A        +G GPG+M+AV +GA +AG    G          
Sbjct: 49  GEGHPAYEAGYRLGRALAEA-GFGVVTGGGPGVMEAVNRGAYEAGGVSVGL--------- 98

Query: 62  TASNFHPYLPLE----TYLT----CRFFSARKHGLIDCAVRNDSCDRTAVVALPGGVGTL 113
                +  LP E     Y T     R+F  RK   +  AV          V LPGG GTL
Sbjct: 99  -----NIELPHEQKPNPYQTHALSLRYFFVRKVLFVRYAV--------GFVFLPGGFGTL 145

Query: 114 DEMFEILALIQLERIGSELPVPFLVMNYDSFYKKLLDFLGDCEDWGTVAKDEVASLWKIC 173
           DE+ E+L L+Q E++      P  +++   +++ L+ +L    D   V  +++  L+++ 
Sbjct: 146 DELSEVLVLLQTEKVH---RFPVFLLD-RGYWEGLVRWLAFLRDQKAVGPEDL-QLFRLT 200

Query: 174 DSNSEALSYLAEFY 187
           D   E +  L    
Sbjct: 201 DEPEEVVQALKAEA 214

>1weh_A Conserved hypothetical protein TT1887; rossman fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; 1.80A {Thermus thermophilus} SCOP: c.129.1.1 Length = 171

 Score =  104 bits (262), Expect = 1e-28
 Identities = 40/190 (21%), Positives = 61/190 (32%), Gaps = 36/190 (18%)

Query: 2   GPDHPHYLQSFELGGEIARLLDCTTWSGAGPGLMDAVTKGAMQAGKPVGGFK-----VGK 56
            P+ P Y +    G  +A         G   G M+A+ +G    G  V G         +
Sbjct: 13  SPEDPLYARWVRYGEVLAEE-GFGLACGGYQGGMEALARGVKAKGGLVVGVTAPAFFPER 71

Query: 57  EAGEWTASNFHPYLPLETYLTCRFFSARKHGLIDCAVRNDSCDRTAVVALPGGVGTLDEM 116
                     +P++ LE  L       R   L+D             +ALPGGVGTL E+
Sbjct: 72  RGP-------NPFVDLE--LPAATLPQRIGRLLDLGA--------GYLALPGGVGTLAEL 114

Query: 117 FEILALIQLERIGSELPVPFLVMNYDSFYKKLLDFLGDCEDWGTVAKDEVASLWKICDSN 176
                L+ L R           +  D ++  LL   G           E   L ++    
Sbjct: 115 VLAWNLLYLRRG------VGRPLAVDPYWLGLLKAHG-------EIAPEDVGLLRVVADE 161

Query: 177 SEALSYLAEF 186
            +   +L   
Sbjct: 162 EDLRRFLRSL 171

>1rcu_A Conserved hypothetical protein VT76; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.50A {Thermotoga maritima} SCOP: c.129.1.1 Length = 195

 Score = 92.4 bits (230), Expect = 1e-23
 Identities = 36/185 (19%), Positives = 66/185 (35%), Gaps = 30/185 (16%)

Query: 3   PDHPHYLQSFELGGEIARLLDCTTWSGAGPGLMDAVTKGAMQAGKPVGGFKVGKEAGEWT 62
           P         ELG  +A+      ++G   G+M+ V++G  +AG  V G    +EAG   
Sbjct: 39  PVSELRDICLELGRTLAKK-GYLVFNGGRDGVMELVSQGVREAGGTVVGILPDEEAG--- 94

Query: 63  ASNFHPYLPLETYLTCRFFSARKHGLIDCAVRNDSCDRTAVVALPGGVGTLDEMFEILAL 122
               +PYL +       F   R   L+  A          VV++ G +GT  E+    AL
Sbjct: 95  ----NPYLSVAVKTGLDFQ-MRSFVLLRNAD--------VVVSIGGEIGTAIEILGAYAL 141

Query: 123 IQLERIGSELPVPFLVMNYDSFYKKLLDFLGDCEDWGTVAKDEVASLWKICDSNSEALSY 182
            +          P +++     +   +  +    D   +    +        +  EA+  
Sbjct: 142 GK----------PVILLRGTGGWTDRISQV--LIDGKYLDNRRI-VEIHQAWTVEEAVQI 188

Query: 183 LAEFY 187
           + +  
Sbjct: 189 IEQIL 193

>3gh1_A Predicted nucleotide-binding protein; structural genomics, protein structure initiative; 1.90A {Vibrio cholerae o1 biovar el tor str} PDB: 2pmb_A Length = 462

 Score = 91.2 bits (226), Expect = 1e-21
 Identities = 34/192 (17%), Positives = 71/192 (36%), Gaps = 24/192 (12%)

Query: 4   DHPHYLQSFELGGEIARLLDCTTWSGAGPGLMDAVTKGAMQAG---KPVGGFKVGKEAGE 60
           +   Y  + E+G E+    +    +G GPG M+   KGA       +      +G     
Sbjct: 159 NEVEYQYTREVGHELGLR-ELNICTGCGPGAMEGPMKGAAVGHAKQRYSEYRYLGLTEPS 217

Query: 61  WTASNF-HPYLPLETYLTCRFFSARKHGLIDCAVRNDSCDRTAVVALPGGVGTLDEMFEI 119
             A+   +P +     +       R    +  A          ++  PGG GT +E+  I
Sbjct: 218 IIAAEPPNPIVNE--LVIMPDIEKRLEAFVRMAH--------GIIIFPGGPGTAEELLYI 267

Query: 120 LALIQLERIGSELPVPFLVM---NYDSFYKKLLDFLGDCEDWGTVAKDEVASLWKICDSN 176
           L ++      ++ P+P ++      +++++ L  F+ D     T+ +          D+ 
Sbjct: 268 LGIMMHPEN-ADQPMPIVLTGPKQSEAYFRSLDKFITD-----TLGEAARKHYSIAIDNP 321

Query: 177 SEALSYLAEFYD 188
           +EA   ++    
Sbjct: 322 AEAARIMSNAMP 333

>2iz6_A Molybdenum cofactor carrier protein; metal transport; 1.60A {Chlamydomonas reinhardtii} PDB: 2iz5_A 2iz7_A Length = 176

 Score = 81.9 bits (203), Expect = 6e-20
 Identities = 32/187 (17%), Positives = 57/187 (30%), Gaps = 40/187 (21%)

Query: 2   GPDHPHYLQSFELGGEIARLLDCTTWSGAG-PGLMDAVTKGAMQAGKPVGGFKVGKEAGE 60
                  + + ELG +IA        +G    G+M    KGA +AG    G   G +  E
Sbjct: 25  DTAENQLVMANELGKQIATH-GWILLTGGRSLGVMHEAMKGAKEAGGTTIGVLPGPDTSE 83

Query: 61  WTASNFHPYLPLETYLTCRFFSARKHGLIDCAVRNDSCDRTAVVALPGGVGTLDEMFEIL 120
                    +  +  +     SAR +          S +   +VA+  G GT  E+   L
Sbjct: 84  -----ISDAV--DIPIVTGLGSARDNINAL------SSN--VLVAVGMGPGTAAEVALAL 128

Query: 121 ALIQLERIGSELPVPFLVMNYDSFYKKLLDFLGDCEDWGTVAKDEVASLWKICDSNSEAL 180
                         P +++      +K    L                L  +    + A+
Sbjct: 129 K----------AKKPVVLLGTQPEAEKFFTSLDA-------------GLVHVAADVAGAI 165

Query: 181 SYLAEFY 187
           + + +  
Sbjct: 166 AAVKQLL 172

>3bq9_A Predicted rossmann fold nucleotide-binding domain containing protein; structural genomics, PSI-2, protein structure initiative; 1.80A {Idiomarina baltica} Length = 460

 Score = 84.2 bits (208), Expect = 2e-19
 Identities = 36/192 (18%), Positives = 66/192 (34%), Gaps = 24/192 (12%)

Query: 4   DHPHYLQSFELGGEIARLLDCTTWSGAGPGLMDAVTKGAMQAGKP---VGGFKVG-KEAG 59
           +   Y  + ++G  I         +G GPG M    KGA          GG  +G  E G
Sbjct: 157 NEIEYKYTKDVGYHIGLR-GLNICTGCGPGAMKGPMKGATIGHAKQRVEGGRYLGLTEPG 215

Query: 60  EWTASNFHPYLPLETYLTCRFFSARKHGLIDCAVRNDSCDRTAVVALPGGVGTLDEMFEI 119
              A   +P +     +       R    + CA          +V  PGG GT +E+  +
Sbjct: 216 IIAAEPPNPIVNEL--VILPDIEKRLEAFVRCAH--------GIVIFPGGAGTAEELLYL 265

Query: 120 LALIQLERIGSELPVPFLVM---NYDSFYKKLLDFLGDCEDWGTVAKDEVASLWKICDSN 176
           L ++          +P ++    +   +++ L +F+G      T+  +       I D  
Sbjct: 266 LGILMHPD-NQRQSLPVILTGPASSRDYFEALDEFIG-----ATIGDEARQLYKIIIDDP 319

Query: 177 SEALSYLAEFYD 188
           +    ++     
Sbjct: 320 AAVAQHMHAGMA 331

>3sbx_A Putative uncharacterized protein; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: AMP; 2.50A {Mycobacterium marinum M} Length = 189

 Score = 77.6 bits (192), Expect = 4e-18
 Identities = 44/187 (23%), Positives = 64/187 (34%), Gaps = 27/187 (14%)

Query: 3   PDHPHYLQS-FELGGEIARLLDCTTWSGAGPGLMDAVTKGAMQAGKPVGG----FKVGKE 57
           P HP  L+    +G  IA       W G     M AV+  A   G    G      V +E
Sbjct: 24  PTHPELLELAGAVGAAIAARGWTLVWGGGHVSAMGAVSSAARAHGGWTVGVIPKMLVHRE 83

Query: 58  AGEWTASNFHPYLPLETYLTCRFFSARKHGLIDCAVRNDSCDRTAVVALPGGVGTLDEMF 117
             +  A                    RK  + D A      +  A + LPGGVGTLDE+ 
Sbjct: 84  LADHDADELV---------VTETMWERKQVMEDRA------N--AFITLPGGVGTLDELL 126

Query: 118 EILALIQLERIGSELPVPFLVMNYDSFYKKLLDFLGDCEDWGTVAKDEVASLWKICDSNS 177
           ++     L           +V++    +  L  +L +  D G V          + D+  
Sbjct: 127 DVWTEGYLGMHDK----SIVVLDPWGHFDGLRAWLSELADTGYV-SRTAMERLIVVDNLD 181

Query: 178 EALSYLA 184
           +AL   A
Sbjct: 182 DALQACA 188

>1ydh_A AT5G11950; structural genomics, protein structure initiative, center for eukaryotic structural genomics, CESG; 2.15A {Arabidopsis thaliana} SCOP: c.129.1.1 PDB: 2q4d_A Length = 216

 Score = 77.4 bits (191), Expect = 8e-18
 Identities = 37/187 (19%), Positives = 67/187 (35%), Gaps = 27/187 (14%)

Query: 5   HPHYLQS-FELGGEIARLLDCTTWSGAGPGLMDAVTKGAMQAGKPVGG----FKVGKEAG 59
              +  +  ELG E+ +      + G   GLM  +++   + G  V G      +  E  
Sbjct: 23  REVFSDAAIELGNELVKRKIDLVYGGGSVGLMGLISRRVYEGGLHVLGIIPKALMPIEIS 82

Query: 60  EWTASNFHPYLPLETYLTCRFFSARKHGLIDCAVRNDSCDRTAVVALPGGVGTLDEMFEI 119
             T  +                  RK  +   A      +  A +ALPGG GT++E+ E+
Sbjct: 83  GETVGDVR---------VVADMHERKAAMAQEA------E--AFIALPGGYGTMEELLEM 125

Query: 120 LALIQLERIGSELPVPFLVMNYDSFYKKLLDFLGDCEDWGTVAKDEVASLWKICDSNSEA 179
           +   QL            ++N D +Y  LL       + G + K    ++     +  E 
Sbjct: 126 ITWSQLGIHKK----TVGLLNVDGYYNNLLALFDTGVEEGFI-KPGARNIVVSAPTAKEL 180

Query: 180 LSYLAEF 186
           +  + E+
Sbjct: 181 MEKMEEY 187

>2a33_A Hypothetical protein; structural genomics, protein structure initiative, center for eukaryotic structural genomics, CESG, AT2G37210; 1.95A {Arabidopsis thaliana} SCOP: c.129.1.1 PDB: 2q4o_A Length = 215

 Score = 76.6 bits (189), Expect = 1e-17
 Identities = 41/187 (21%), Positives = 67/187 (35%), Gaps = 27/187 (14%)

Query: 5   HPHYLQS-FELGGEIARLLDCTTWSGAGPGLMDAVTKGAMQAGKPVGG----FKVGKEAG 59
              Y  +  +LG E+        + G   GLM  V++     G+ V G      + +E  
Sbjct: 27  KSSYQDAAVDLGNELVSRNIDLVYGGGSIGLMGLVSQAVHDGGRHVIGIIPKTLMPRELT 86

Query: 60  EWTASNFHPYLPLETYLTCRFFSARKHGLIDCAVRNDSCDRTAVVALPGGVGTLDEMFEI 119
             T                     RK  +   +      D  A +ALPGG GTL+E+ E+
Sbjct: 87  GETVGEVR---------AVADMHQRKAEMAKHS------D--AFIALPGGYGTLEELLEV 129

Query: 120 LALIQLERIGSELPVPFLVMNYDSFYKKLLDFLGDCEDWGTVAKDEVASLWKICDSNSEA 179
           +   QL         P  ++N D +Y  LL F+    + G +       +     +  E 
Sbjct: 130 ITWAQLGIHDK----PVGLLNVDGYYNSLLSFIDKAVEEGFI-SPTAREIIVSAPTAKEL 184

Query: 180 LSYLAEF 186
           +  L E+
Sbjct: 185 VKKLEEY 191

>1t35_A Hypothetical protein YVDD, putative lysine decarboxylase; structural genomics target, NYSGXRC, PSI, protein structure initiative; 2.72A {Bacillus subtilis} SCOP: c.129.1.1 Length = 191

 Score = 75.7 bits (187), Expect = 2e-17
 Identities = 32/187 (17%), Positives = 62/187 (33%), Gaps = 27/187 (14%)

Query: 5   HPHYLQS-FELGGEIARLLDCTTWSGAGPGLMDAVTKGAMQAGKPVGG----FKVGKEAG 59
           +  Y +   ELG  +A       + G+  GLM  +    M+ G    G         E  
Sbjct: 15  NEAYKRKAAELGVYMAEQGIGLVYGGSRVGLMGTIADAIMENGGTAIGVMPSGLFSGEVV 74

Query: 60  EWTASNFHPYLPLETYLTCRFFSARKHGLIDCAVRNDSCDRTAVVALPGGVGTLDEMFEI 119
               +                   RK  + + A      D    +++PGG GT +E+FE+
Sbjct: 75  HQNLTELI---------EVNGMHERKAKMSELA------D--GFISMPGGFGTYEELFEV 117

Query: 120 LALIQLERIGSELPVPFLVMNYDSFYKKLLDFLGDCEDWGTVAKDEVASLWKICDSNSEA 179
           L   Q+         P  + N + +++ ++  +      G  + +    L        E 
Sbjct: 118 LCWAQIGIHQK----PIGLYNVNGYFEPMMKMVKYSIQEG-FSNESHLKLIHSSSRPDEL 172

Query: 180 LSYLAEF 186
           +  +  +
Sbjct: 173 IEQMQNY 179

>3qua_A Putative uncharacterized protein; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 2.10A {Mycobacterium smegmatis str} Length = 199

 Score = 75.7 bits (187), Expect = 2e-17
 Identities = 45/187 (24%), Positives = 63/187 (33%), Gaps = 27/187 (14%)

Query: 3   PDHPHYLQS-FELGGEIARLLDCTTWSGAGPGLMDAVTKGAMQAGKPVGG----FKVGKE 57
           P HP  L+   E+G  IA         G     M AV + A   G    G      V +E
Sbjct: 33  PTHPELLELAAEVGSSIAARGWTLVSGGGNVSAMGAVAQAARAKGGHTVGVIPKALVHRE 92

Query: 58  AGEWTASNFHPYLPLETYLTCRFFSARKHGLIDCAVRNDSCDRTAVVALPGGVGTLDEMF 117
             +  A+                   RK  +   +      D  A +ALPGG+GTL+E F
Sbjct: 93  LADVDAAELI---------VTDTMRERKREMEHRS------D--AFIALPGGIGTLEEFF 135

Query: 118 EILALIQLERIGSELPVPFLVMNYDSFYKKLLDFLGDCEDWGTVAKDEVASLWKICDSNS 177
           E      L         P ++++    Y  LL +L      G V          + D+  
Sbjct: 136 EAWTAGYLGMHDK----PLILLDPFGHYDGLLTWLRGLVPTGYV-SQRAMDSLVVVDNVE 190

Query: 178 EALSYLA 184
            AL   A
Sbjct: 191 AALEACA 197

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 42.9 bits (100), Expect = 4e-05
 Identities = 23/129 (17%), Positives = 47/129 (36%), Gaps = 13/129 (10%)

Query: 76  LTCR-FFSARKHGLIDCAVRNDSCDRTAVVALPGGVGTLDEMFEILALIQLERIGSELPV 134
           L+C+   + R   + D  +   +    ++      + T DE+  +L    L+    +LP 
Sbjct: 264 LSCKILLTTRFKQVTD-FLSAATTTHISLDHHSMTL-TPDEVKSLLLKY-LDCRPQDLPR 320

Query: 135 ------PFLVMNYDSFYKKLLDFLGDCEDWGTVAKDEVASLWKICDSNSEALSYLAEFYD 188
                 P  +       + + D L   ++W  V  D++ ++ +   +  E   Y   F  
Sbjct: 321 EVLTTNPRRL---SIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDR 377

Query: 189 LSSIDKRVH 197
           LS      H
Sbjct: 378 LSVFPPSAH 386

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	209
3sbx_A	189	Putative uncharacterized protein; structural genom	100.0
3qua_A	199	Putative uncharacterized protein; structural genom	100.0
1t35_A	191	Hypothetical protein YVDD, putative lysine decarbo	100.0
1ydh_A	216	AT5G11950; structural genomics, protein structure	100.0
2a33_A	215	Hypothetical protein; structural genomics, protein	100.0
1wek_A	217	Hypothetical protein TT1465; rossman fold, structu	100.0
1weh_A	171	Conserved hypothetical protein TT1887; rossman fol	100.0
3gh1_A	462	Predicted nucleotide-binding protein; structural g	100.0
3bq9_A	460	Predicted rossmann fold nucleotide-binding domain	100.0
1rcu_A	195	Conserved hypothetical protein VT76; structural ge	100.0
2iz6_A	176	Molybdenum cofactor carrier protein; metal transpo	100.0
3maj_A	382	DNA processing chain A; MCSG, PSI-2, structural ge	98.26
3uqz_A	288	DNA processing protein DPRA; SAM and rossmann fold	97.83
3imk_A	158	Putative molybdenum carrier protein; YP_461806.1,	96.08
2nx2_A	181	Hypothetical protein YPSA; structural genomics, un	92.95
2f62_A	161	Nucleoside 2-deoxyribosyltransferase; SGPP, struct	92.68
2khz_A	165	C-MYC-responsive protein RCL; flexible loop, nucle	92.1
3ehd_A	162	Uncharacterized conserved protein; PSI,MCSG,PF0501	91.43
1f8y_A	157	Nucleoside 2-deoxyribosyltransferase; active site,	85.08
2o6l_A	170	UDP-glucuronosyltransferase 2B7; drug metabolism,	84.41

>3sbx_A Putative uncharacterized protein; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: AMP; 2.50A {Mycobacterium marinum M}

Probab=100.00  E-value=6e-48  Score=317.99  Aligned_cols=163  Identities=25%  Similarity=0.275  Sum_probs=144.0

Q ss_pred             CcHHHHH-HHHHHHHHHHcCCCEEEccCCccHHHHHHHHHHhCCCcEEEEecCCCcccccccCCCCCCCccceeeccchH
Q 028413            4 DHPHYLQ-SFELGGEIARLLDCTTWSGAGPGLMDAVTKGAMQAGKPVGGFKVGKEAGEWTASNFHPYLPLETYLTCRFFS   82 (209)
Q Consensus         4 ~~p~y~~-A~~LG~~La~~g~~~V~~GG~~GlM~ava~ga~~~gG~viGi~~~~~~~~~~~~~~n~~l~~e~~i~~~~~~   82 (209)
                      .+|.|.+ |++||++||++|..+|||||..|+|+|+|+||+++||+|+||+|...+.+   +.+|++++  ..+++.+|+
T Consensus        25 ~~~~~~~~A~~lg~~la~~g~~lv~GGG~~GlM~a~~~ga~~~GG~viGv~p~~l~~~---e~~~~~~~--~~i~~~~~~   99 (189)
T 3sbx_A           25 THPELLELAGAVGAAIAARGWTLVWGGGHVSAMGAVSSAARAHGGWTVGVIPKMLVHR---ELADHDAD--ELVVTETMW   99 (189)
T ss_dssp             CCHHHHHHHHHHHHHHHHTTCEEEECCBCSHHHHHHHHHHHTTTCCEEEEEETTTTTT---TTBCTTCS--EEEEESSHH
T ss_pred             CChHHHHHHHHHHHHHHHCCCEEEECCCccCHHHHHHHHHHHcCCcEEEEcCchhhhc---ccCCCCCC--eeEEcCCHH
Confidence            4566655 99999999999887777767779999999999999999999999642221   24699997  567789999


Q ss_pred             HHHHHhHhhhhhcCCCCccEEEEeCCCcccHHHHHHHHHHHHhhhhcCCCCccEEEEeCCccchHHHHHHHhHHHcCCCC
Q 028413           83 ARKHGLIDCAVRNDSCDRTAVVALPGGVGTLDEMFEILALIQLERIGSELPVPFLVMNYDSFYKKLLDFLGDCEDWGTVA  162 (209)
Q Consensus        83 ~Rk~~m~~~~~~~~~~~sDa~I~lPGG~GTLeEl~e~~t~~ql~~~~~~~~kPiilln~~g~w~~l~~~l~~~~~~gfi~  162 (209)
                      +||.+|+++|        ||||+||||+|||||+||+|||.|+++|    +|||+|+|.+|||+++++|+++++++||++
T Consensus       100 ~Rk~~m~~~s--------da~IalPGG~GTLdElfe~lt~~qlg~~----~kPvvlln~~gfw~~l~~~l~~~~~~Gfi~  167 (189)
T 3sbx_A          100 ERKQVMEDRA--------NAFITLPGGVGTLDELLDVWTEGYLGMH----DKSIVVLDPWGHFDGLRAWLSELADTGYVS  167 (189)
T ss_dssp             HHHHHHHHHC--------SEEEECSCCHHHHHHHHHHHHHHHTTSC----CCCEEEECTTCTTHHHHHHHHHHHHTTSSC
T ss_pred             HHHHHHHHHC--------CEEEEeCCCcchHHHHHHHHHHHHhccc----CCCEEEecCCccchHHHHHHHHHHHCCCCC
Confidence            9999999997        9999999999999999999999999864    799999999999999999999999999999


Q ss_pred             hhcccccEEEeCCHHHHHHHHH
Q 028413          163 KDEVASLWKICDSNSEALSYLA  184 (209)
Q Consensus       163 ~~~~~~~i~~~~~~ee~~~~l~  184 (209)
                      +++ .+++.+++|++|+++.|+
T Consensus       168 ~~~-~~~i~~~d~~ee~~~~l~  188 (189)
T 3sbx_A          168 RTA-MERLIVVDNLDDALQACA  188 (189)
T ss_dssp             HHH-HHHEEEESSHHHHHHHHC
T ss_pred             HHH-cCeEEEeCCHHHHHHHhc
Confidence            975 488999999999999873

>3qua_A Putative uncharacterized protein; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 2.10A {Mycobacterium smegmatis str}

Probab=100.00  E-value=4.2e-47  Score=315.22  Aligned_cols=163  Identities=25%  Similarity=0.277  Sum_probs=144.1

Q ss_pred             CcHHHHH-HHHHHHHHHHcCCCEEEccCCccHHHHHHHHHHhCCCcEEEEecCCCcccccccCCCCCCCccceeeccchH
Q 028413            4 DHPHYLQ-SFELGGEIARLLDCTTWSGAGPGLMDAVTKGAMQAGKPVGGFKVGKEAGEWTASNFHPYLPLETYLTCRFFS   82 (209)
Q Consensus         4 ~~p~y~~-A~~LG~~La~~g~~~V~~GG~~GlM~ava~ga~~~gG~viGi~~~~~~~~~~~~~~n~~l~~e~~i~~~~~~   82 (209)
                      .+|.|.+ |++||++||++|..+|+|||..|+|+|+++||+++||+|+||+|......   +.+|++++  .++++++|+
T Consensus        34 ~~~~~~~~A~~lg~~La~~g~~lV~GGG~~GlM~a~~~gA~~~GG~viGv~p~~l~~~---e~~~~~~~--~~i~~~~~~  108 (199)
T 3qua_A           34 THPELLELAAEVGSSIAARGWTLVSGGGNVSAMGAVAQAARAKGGHTVGVIPKALVHR---ELADVDAA--ELIVTDTMR  108 (199)
T ss_dssp             CCHHHHHHHHHHHHHHHHTTCEEEECCBCSHHHHHHHHHHHHTTCCEEEEEEGGGTTT---TTBCTTSS--EEEEESSHH
T ss_pred             CCHHHHHHHHHHHHHHHHCCCEEEECCCccCHHHHHHHHHHHcCCcEEEEeCchhhhc---cccCCCCC--eeEEcCCHH
Confidence            4677765 89999999999877777666679999999999999999999998642211   24699997  467789999


Q ss_pred             HHHHHhHhhhhhcCCCCccEEEEeCCCcccHHHHHHHHHHHHhhhhcCCCCccEEEEeCCccchHHHHHHHhHHHcCCCC
Q 028413           83 ARKHGLIDCAVRNDSCDRTAVVALPGGVGTLDEMFEILALIQLERIGSELPVPFLVMNYDSFYKKLLDFLGDCEDWGTVA  162 (209)
Q Consensus        83 ~Rk~~m~~~~~~~~~~~sDa~I~lPGG~GTLeEl~e~~t~~ql~~~~~~~~kPiilln~~g~w~~l~~~l~~~~~~gfi~  162 (209)
                      +||.+|+++|        ||||+||||+|||+|+||+|||.|+++|    +|||+|+|.+|||+++++|+++|+++||++
T Consensus       109 ~Rk~~m~~~s--------da~IalPGG~GTldEl~e~lt~~qlg~~----~kPvvlln~~gfw~~l~~~l~~~~~~Gfi~  176 (199)
T 3qua_A          109 ERKREMEHRS--------DAFIALPGGIGTLEEFFEAWTAGYLGMH----DKPLILLDPFGHYDGLLTWLRGLVPTGYVS  176 (199)
T ss_dssp             HHHHHHHHHC--------SEEEECSCCHHHHHHHHHHHHHHHTTSC----CCCEEEECTTSTTHHHHHHHHHTTTTTSSC
T ss_pred             HHHHHHHHhc--------CccEEeCCCccHHHHHHHHHHHHHhccC----CCCEEEEcCCccchHHHHHHHHHHHCCCCC
Confidence            9999999997        9999999999999999999999999864    799999999999999999999999999999


Q ss_pred             hhcccccEEEeCCHHHHHHHHH
Q 028413          163 KDEVASLWKICDSNSEALSYLA  184 (209)
Q Consensus       163 ~~~~~~~i~~~~~~ee~~~~l~  184 (209)
                      +++ .+++.+++|++|+++.|+
T Consensus       177 ~~~-~~~i~~~d~~~e~~~~l~  197 (199)
T 3qua_A          177 QRA-MDSLVVVDNVEAALEACA  197 (199)
T ss_dssp             HHH-HHTSEEESSHHHHHHHHS
T ss_pred             HHH-CCeEEEeCCHHHHHHHHh
Confidence            976 478899999999999885

>1t35_A Hypothetical protein YVDD, putative lysine decarboxylase; structural genomics target, NYSGXRC, PSI, protein structure initiative; 2.72A {Bacillus subtilis} SCOP: c.129.1.1

Probab=100.00  E-value=7.2e-47  Score=312.22  Aligned_cols=173  Identities=20%  Similarity=0.308  Sum_probs=143.8

Q ss_pred             cHHHHH-HHHHHHHHHHcCCCEEEccCCccHHHHHHHHHHhCCCcEEEEecCCCcccccccCCCCCCCccceeeccchHH
Q 028413            5 HPHYLQ-SFELGGEIARLLDCTTWSGAGPGLMDAVTKGAMQAGKPVGGFKVGKEAGEWTASNFHPYLPLETYLTCRFFSA   83 (209)
Q Consensus         5 ~p~y~~-A~~LG~~La~~g~~~V~~GG~~GlM~ava~ga~~~gG~viGi~~~~~~~~~~~~~~n~~l~~e~~i~~~~~~~   83 (209)
                      +|.|.+ |++||++||++|..+|+|||..|+|+|+++||+++||+|+||+|......   +.+|++++  ..+.+.+|++
T Consensus        15 ~~~~~~~A~~lg~~La~~g~~lV~GGg~~GiM~aa~~gA~~~gG~~iGv~p~~l~~~---e~~~~~~~--~~~~~~~~~~   89 (191)
T 1t35_A           15 NEAYKRKAAELGVYMAEQGIGLVYGGSRVGLMGTIADAIMENGGTAIGVMPSGLFSG---EVVHQNLT--ELIEVNGMHE   89 (191)
T ss_dssp             STHHHHHHHHHHHHHHHTTCEEEECCCCSHHHHHHHHHHHTTTCCEEEEEETTCCHH---HHTTCCCS--EEEEESHHHH
T ss_pred             ChHHHHHHHHHHHHHHHCCCEEEECCCcccHHHHHHHHHHHcCCeEEEEeCchhccc---ccccCCCC--ccccCCCHHH
Confidence            555554 99999999999877766666679999999999999999999998632211   13588886  4566799999


Q ss_pred             HHHHhHhhhhhcCCCCccEEEEeCCCcccHHHHHHHHHHHHhhhhcCCCCccEEEEeCCccchHHHHHHHhHHHcCCCCh
Q 028413           84 RKHGLIDCAVRNDSCDRTAVVALPGGVGTLDEMFEILALIQLERIGSELPVPFLVMNYDSFYKKLLDFLGDCEDWGTVAK  163 (209)
Q Consensus        84 Rk~~m~~~~~~~~~~~sDa~I~lPGG~GTLeEl~e~~t~~ql~~~~~~~~kPiilln~~g~w~~l~~~l~~~~~~gfi~~  163 (209)
                      ||.+|+++|        |+||+||||+|||||+||+|||.|++++    +|||+++|.+|||+++++|+++|+++||+++
T Consensus        90 Rk~~~~~~s--------da~IvlPGG~GTl~El~e~lt~~q~g~~----~kPvvll~~~g~~~~l~~~l~~~~~~Gfi~~  157 (191)
T 1t35_A           90 RKAKMSELA--------DGFISMPGGFGTYEELFEVLCWAQIGIH----QKPIGLYNVNGYFEPMMKMVKYSIQEGFSNE  157 (191)
T ss_dssp             HHHHHHHHC--------SEEEECSCCHHHHHHHHHHHHTTSCSSC----CCCEEEECGGGTTHHHHHHHHHHHHTTSSCT
T ss_pred             HHHHHHHHC--------CEEEEeCCCccHHHHHHHHHHHHHhCCC----CCCEEEecCCcccchHHHHHHHHHHCCCCCH
Confidence            999999997        9999999999999999999999999864    6999999999999999999999999999999


Q ss_pred             hcccccEEEeCCHHHHHHHHHhhhcCCCCC-cccc
Q 028413          164 DEVASLWKICDSNSEALSYLAEFYDLSSID-KRVH  197 (209)
Q Consensus       164 ~~~~~~i~~~~~~ee~~~~l~~~~~~~~~~-~~~~  197 (209)
                      ++. +.+.+++|++|+++.|++|.  ++.. ++|.
T Consensus       158 ~~~-~~~~~~~~~~e~~~~l~~~~--~~~~~~~~~  189 (191)
T 1t35_A          158 SHL-KLIHSSSRPDELIEQMQNYS--YPILEKKWT  189 (191)
T ss_dssp             THH-HHEEEESSHHHHHHHHHTC------------
T ss_pred             HHc-CeEEEeCCHHHHHHHHHHhc--CCccccccc
Confidence            764 78999999999999999973  3333 5664

>1ydh_A AT5G11950; structural genomics, protein structure initiative, center for eukaryotic structural genomics, CESG; 2.15A {Arabidopsis thaliana} SCOP: c.129.1.1 PDB: 2q4d_A

Probab=100.00  E-value=1.2e-45  Score=310.22  Aligned_cols=166  Identities=21%  Similarity=0.304  Sum_probs=142.7

Q ss_pred             CcHHHH-HHHHHHHHHHHcCCCEEEccCCccHHHHHHHHHHhCCCcEEEEecC-CCcccccccCCCCCCCccceeeccch
Q 028413            4 DHPHYL-QSFELGGEIARLLDCTTWSGAGPGLMDAVTKGAMQAGKPVGGFKVG-KEAGEWTASNFHPYLPLETYLTCRFF   81 (209)
Q Consensus         4 ~~p~y~-~A~~LG~~La~~g~~~V~~GG~~GlM~ava~ga~~~gG~viGi~~~-~~~~~~~~~~~n~~l~~e~~i~~~~~   81 (209)
                      .++.|. .|++||++||++|..+|+|||.+|+|+|+++||+++||.|+||+|. +.+.|..   .|++ + + ++.+++|
T Consensus        22 ~~~~~~~~A~~lg~~LA~~g~~lV~GGg~~GlM~aa~~gA~~~GG~~iGv~p~~l~~~e~~---~~~~-~-~-~~~~~~~   95 (216)
T 1ydh_A           22 HREVFSDAAIELGNELVKRKIDLVYGGGSVGLMGLISRRVYEGGLHVLGIIPKALMPIEIS---GETV-G-D-VRVVADM   95 (216)
T ss_dssp             SSHHHHHHHHHHHHHHHHTTCEEEECCCSSHHHHHHHHHHHHTTCCEEEEEEGGGHHHHCC---SSCC-S-E-EEEESSH
T ss_pred             CCcHHHHHHHHHHHHHHHCCCEEEECCCcccHhHHHHHHHHHcCCcEEEEechhcCccccc---cCCC-C-c-ccccCCH
Confidence            356555 5999999999998877777777899999999999999999999985 2223322   2443 3 2 4567999


Q ss_pred             HHHHHHhHhhhhhcCCCCccEEEEeCCCcccHHHHHHHHHHHHhhhhcCCCCccEEEEeCCccchHHHHHHHhHHHcCCC
Q 028413           82 SARKHGLIDCAVRNDSCDRTAVVALPGGVGTLDEMFEILALIQLERIGSELPVPFLVMNYDSFYKKLLDFLGDCEDWGTV  161 (209)
Q Consensus        82 ~~Rk~~m~~~~~~~~~~~sDa~I~lPGG~GTLeEl~e~~t~~ql~~~~~~~~kPiilln~~g~w~~l~~~l~~~~~~gfi  161 (209)
                      ++||.+|+++|        |+||+||||+|||||+||+|||.|++.    ++|||+|+|.+|||+++++|+++|+++||+
T Consensus        96 ~~Rk~~~~~~s--------da~I~lpGG~GTLdElfE~lt~~qlg~----~~kPvvll~~~gfw~~l~~~l~~~~~~Gfi  163 (216)
T 1ydh_A           96 HERKAAMAQEA--------EAFIALPGGYGTMEELLEMITWSQLGI----HKKTVGLLNVDGYYNNLLALFDTGVEEGFI  163 (216)
T ss_dssp             HHHHHHHHHHC--------SEEEECSCSHHHHHHHHHHHHHHHHTS----CCCEEEEECGGGTTHHHHHHHHHHHHTTSS
T ss_pred             HHHHHHHHHhC--------CEEEEeCCCccHHHHHHHHHHHHHhcc----cCCCEEEecCCccchHHHHHHHHHHHCCCC
Confidence            99999999997        999999999999999999999999985    479999999999999999999999999999


Q ss_pred             ChhcccccEEEeCCHHHHHHHHHhhhc
Q 028413          162 AKDEVASLWKICDSNSEALSYLAEFYD  188 (209)
Q Consensus       162 ~~~~~~~~i~~~~~~ee~~~~l~~~~~  188 (209)
                      ++++. +++.+++|++|+++.|++|+.
T Consensus       164 ~~~~~-~~~~~~d~~ee~~~~l~~~~~  189 (216)
T 1ydh_A          164 KPGAR-NIVVSAPTAKELMEKMEEYTP  189 (216)
T ss_dssp             CHHHH-TTEEEESSHHHHHHHHHHCC-
T ss_pred             ChHHc-CeEEEeCCHHHHHHHHHHhcc
Confidence            99864 889999999999999998754

>2a33_A Hypothetical protein; structural genomics, protein structure initiative, center for eukaryotic structural genomics, CESG, AT2G37210; 1.95A {Arabidopsis thaliana} SCOP: c.129.1.1 PDB: 2q4o_A

Probab=100.00  E-value=5.2e-45  Score=306.08  Aligned_cols=179  Identities=22%  Similarity=0.316  Sum_probs=138.3

Q ss_pred             CcHHHHH-HHHHHHHHHHcCCCEEEccCCccHHHHHHHHHHhCCCcEEEEecCCC-cccccccCCCCCCCccceeeccch
Q 028413            4 DHPHYLQ-SFELGGEIARLLDCTTWSGAGPGLMDAVTKGAMQAGKPVGGFKVGKE-AGEWTASNFHPYLPLETYLTCRFF   81 (209)
Q Consensus         4 ~~p~y~~-A~~LG~~La~~g~~~V~~GG~~GlM~ava~ga~~~gG~viGi~~~~~-~~~~~~~~~n~~l~~e~~i~~~~~   81 (209)
                      .++.|.+ |++||++||++|..+|+|||..|+|+|+++||+++||.||||+|... ..+.    .++.++  .++.+.+|
T Consensus        26 ~~~~y~~~A~~lg~~LA~~G~~vVsGGg~~GiM~aa~~gAl~~GG~tiGVlP~~~~~~e~----~~~~~~--~~~~~~~f   99 (215)
T 2a33_A           26 KKSSYQDAAVDLGNELVSRNIDLVYGGGSIGLMGLVSQAVHDGGRHVIGIIPKTLMPREL----TGETVG--EVRAVADM   99 (215)
T ss_dssp             SSHHHHHHHHHHHHHHHHTTCEEEECCCSSHHHHHHHHHHHHTTCCEEEEEESSCC------------CC--EEEEESSH
T ss_pred             CchHHHHHHHHHHHHHHHCCCEEEECCChhhHhHHHHHHHHHcCCcEEEEcchHhcchhh----ccCCCC--ceeecCCH
Confidence            4466765 89999999999876766666679999999999999999999998532 2221    244443  34567999


Q ss_pred             HHHHHHhHhhhhhcCCCCccEEEEeCCCcccHHHHHHHHHHHHhhhhcCCCCccEEEEeCCccchHHHHHHHhHHHcCCC
Q 028413           82 SARKHGLIDCAVRNDSCDRTAVVALPGGVGTLDEMFEILALIQLERIGSELPVPFLVMNYDSFYKKLLDFLGDCEDWGTV  161 (209)
Q Consensus        82 ~~Rk~~m~~~~~~~~~~~sDa~I~lPGG~GTLeEl~e~~t~~ql~~~~~~~~kPiilln~~g~w~~l~~~l~~~~~~gfi  161 (209)
                      ++||.+|+++|        |+||++|||+|||||+||+|||.|++.    ++|||+|+|.+|||+++++|+++++++||+
T Consensus       100 ~~Rk~~~~~~s--------da~VvlpGG~GTLdElfE~lt~~qlg~----~~kPvvll~~~g~w~~l~~~l~~~~~~Gfi  167 (215)
T 2a33_A          100 HQRKAEMAKHS--------DAFIALPGGYGTLEELLEVITWAQLGI----HDKPVGLLNVDGYYNSLLSFIDKAVEEGFI  167 (215)
T ss_dssp             HHHHHHHHHTC--------SEEEECSCCHHHHHHHHHHHHHHHTTS----CCCCEEEECGGGTTHHHHHHHHHHHHHTSS
T ss_pred             HHHHHHHHHhC--------CEEEEeCCCCchHHHHHHHHHHHHhCC----CCCCeEEecCcchhHHHHHHHHHHHHcCCC
Confidence            99999999987        999999999999999999999999985    379999999999999999999999999999


Q ss_pred             ChhcccccEEEeCCHHHHHHHHHhhhcCCC---CCcccccccc
Q 028413          162 AKDEVASLWKICDSNSEALSYLAEFYDLSS---IDKRVHEVNL  201 (209)
Q Consensus       162 ~~~~~~~~i~~~~~~ee~~~~l~~~~~~~~---~~~~~~~~~~  201 (209)
                      ++++. +++.+++|++|+++.|++|++++.   ....|...++
T Consensus       168 ~~~~~-~~~~~~d~~ee~~~~l~~~~~~~~~~~~~~~~~~~~~  209 (215)
T 2a33_A          168 SPTAR-EIIVSAPTAKELVKKLEEYAPCHERVATKLCWEMERI  209 (215)
T ss_dssp             CHHHH-TTEEEESSHHHHHHHHHC-------------------
T ss_pred             CHHHC-CeEEEeCCHHHHHHHHHHhcCcccccccccccccccc
Confidence            99764 789999999999999999864322   2335665444

>1wek_A Hypothetical protein TT1465; rossman fold, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; 2.20A {Thermus thermophilus} SCOP: c.129.1.1

Probab=100.00  E-value=5.8e-44  Score=300.09  Aligned_cols=163  Identities=29%  Similarity=0.508  Sum_probs=141.0

Q ss_pred             HHHHHHHHHHHHHHHcCCCEEEccCCccHHHHHHHHHHhCCCcEEEEecCCCcccccccCCCCCCCccceeeccchHHHH
Q 028413            6 PHYLQSFELGGEIARLLDCTTWSGAGPGLMDAVTKGAMQAGKPVGGFKVGKEAGEWTASNFHPYLPLETYLTCRFFSARK   85 (209)
Q Consensus         6 p~y~~A~~LG~~La~~g~~~V~~GG~~GlM~ava~ga~~~gG~viGi~~~~~~~~~~~~~~n~~l~~e~~i~~~~~~~Rk   85 (209)
                      +.|+.|++||++||++|..+|+||| +|+|+|+++||+++||.|+||+|..+..    +.+|++++  ..+.+.+|++||
T Consensus        53 ~~~~~A~~lg~~La~~g~~lVsGGg-~GiM~aa~~gAl~~gG~~iGV~~~~P~~----~~~~~~~t--~~~~~~~f~~Rk  125 (217)
T 1wek_A           53 PAYEAGYRLGRALAEAGFGVVTGGG-PGVMEAVNRGAYEAGGVSVGLNIELPHE----QKPNPYQT--HALSLRYFFVRK  125 (217)
T ss_dssp             HHHHHHHHHHHHHHHHTCEEEECSC-SHHHHHHHHHHHHTTCCEEEEEECCTTC----CCCCSCCS--EEEEESCHHHHH
T ss_pred             HHHHHHHHHHHHHHHCCCEEEeCCh-hhHHHHHHHHHHHcCCCEEEEeeCCcch----hhccccCC--cCcccCCHHHHH
Confidence            4444599999999999776666555 9999999999999999999998765322    34689987  456779999999


Q ss_pred             HHhHhhhhhcCCCCccEEEEeCCCcccHHHHHHHHHHHHhhhhcCCCCccEEEEeCCccchHHHHHHHhHHHcCCCChhc
Q 028413           86 HGLIDCAVRNDSCDRTAVVALPGGVGTLDEMFEILALIQLERIGSELPVPFLVMNYDSFYKKLLDFLGDCEDWGTVAKDE  165 (209)
Q Consensus        86 ~~m~~~~~~~~~~~sDa~I~lPGG~GTLeEl~e~~t~~ql~~~~~~~~kPiilln~~g~w~~l~~~l~~~~~~gfi~~~~  165 (209)
                      .+|+++|        ||||++|||+|||+|+|++|+|.|++++   ++|||+++|. +||+++++|+++++++||+++++
T Consensus       126 ~~m~~~s--------da~IvlpGG~GTL~El~e~lt~~qlg~~---~~kPvvll~~-~~w~~l~~~l~~~~~~Gfi~~~~  193 (217)
T 1wek_A          126 VLFVRYA--------VGFVFLPGGFGTLDELSEVLVLLQTEKV---HRFPVFLLDR-GYWEGLVRWLAFLRDQKAVGPED  193 (217)
T ss_dssp             HHHHHTE--------EEEEECSCCHHHHHHHHHHHHHHHTTSS---CCCCEEEECH-HHHHHHHHHHHHHHHTTSSCTTG
T ss_pred             HHHHHhC--------CEEEEeCCCCcHHHHHHHHHHHHhhCCC---CCCCEEEeCc-ccchhHHHHHHHHHHCCCCCHHH
Confidence            9999997        9999999999999999999999999865   4799999997 69999999999999999999976


Q ss_pred             ccccEEEeCCHHHHHHHHHhhhc
Q 028413          166 VASLWKICDSNSEALSYLAEFYD  188 (209)
Q Consensus       166 ~~~~i~~~~~~ee~~~~l~~~~~  188 (209)
                      . +.+.+++|++|+++.|++|+.
T Consensus       194 ~-~~~~~~~~~~e~~~~l~~~~~  215 (217)
T 1wek_A          194 L-QLFRLTDEPEEVVQALKAEAP  215 (217)
T ss_dssp             G-GGSEEESCHHHHHHHHHC---
T ss_pred             c-CeEEEeCCHHHHHHHHHHhcC
Confidence            4 788999999999999999853

>1weh_A Conserved hypothetical protein TT1887; rossman fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; 1.80A {Thermus thermophilus} SCOP: c.129.1.1

Probab=100.00  E-value=1.6e-41  Score=275.73  Aligned_cols=154  Identities=23%  Similarity=0.347  Sum_probs=131.1

Q ss_pred             cHHHH-HHHHHHHHHHHcCCCEEEccCCccHHHHHHHHHHhCCCcEEEEecC-CCcccccccCCCCCCCccceeeccchH
Q 028413            5 HPHYL-QSFELGGEIARLLDCTTWSGAGPGLMDAVTKGAMQAGKPVGGFKVG-KEAGEWTASNFHPYLPLETYLTCRFFS   82 (209)
Q Consensus         5 ~p~y~-~A~~LG~~La~~g~~~V~~GG~~GlM~ava~ga~~~gG~viGi~~~-~~~~~~~~~~~n~~l~~e~~i~~~~~~   82 (209)
                      +|.|. .|++||++||++|..+|+ ||++|+|+|+++||+++||+|+||+|. .-+.+   +.+|++++  ..+.+.+|+
T Consensus        15 ~~~~~~~A~~lg~~La~~g~~lV~-Ggg~GiM~aa~~gAl~~gG~tiGV~~~~~~p~e---~~~~~~~~--~~~~~~~f~   88 (171)
T 1weh_A           15 EDPLYARWVRYGEVLAEEGFGLAC-GGYQGGMEALARGVKAKGGLVVGVTAPAFFPER---RGPNPFVD--LELPAATLP   88 (171)
T ss_dssp             TSHHHHHHHHHHHHHHHTTEEEEE-CCSSTHHHHHHHHHHHTTCCEEECCCGGGCTTS---CSSCTTCS--EECCCSSHH
T ss_pred             CcHHHHHHHHHHHHHHHCCCEEEe-CChhhHHHHHHHHHHHcCCcEEEEeccccCccc---ccccCCCc--eeeecCCHH
Confidence            34455 599999999999765555 555699999999999999999999986 22222   24689987  456679999


Q ss_pred             HHHHHhHhhhhhcCCCCccEEEEeCCCcccHHHHHHHHHHHHhhhhcCCCCccEEEEeCCccchHHHHHHHhHHHcCCCC
Q 028413           83 ARKHGLIDCAVRNDSCDRTAVVALPGGVGTLDEMFEILALIQLERIGSELPVPFLVMNYDSFYKKLLDFLGDCEDWGTVA  162 (209)
Q Consensus        83 ~Rk~~m~~~~~~~~~~~sDa~I~lPGG~GTLeEl~e~~t~~ql~~~~~~~~kPiilln~~g~w~~l~~~l~~~~~~gfi~  162 (209)
                      +||++|+++|        |+||++|||+|||+|+|++|+|.|++++   ++|| +++|  +||++++      +++||++
T Consensus        89 ~Rk~~~~~~s--------da~ivlpGG~GTl~El~e~lt~~q~g~~---~~kP-vll~--g~~~~l~------~~~gfi~  148 (171)
T 1weh_A           89 QRIGRLLDLG--------AGYLALPGGVGTLAELVLAWNLLYLRRG---VGRP-LAVD--PYWLGLL------KAHGEIA  148 (171)
T ss_dssp             HHHHHHHHHE--------EEEEECSCCHHHHHHHHHHHHHHHTCSS---CSCC-EEEC--GGGGGTC------CCBTTBC
T ss_pred             HHHHHHHHhC--------CEEEEeCCCccHHHHHHHHHHHHHhCcc---CCCe-EEEC--cchhhhH------hhcCCCC
Confidence            9999999997        9999999999999999999999999875   5799 9999  9999987      7789999


Q ss_pred             hhcccccEEEeCCHHHHHHHHHh
Q 028413          163 KDEVASLWKICDSNSEALSYLAE  185 (209)
Q Consensus       163 ~~~~~~~i~~~~~~ee~~~~l~~  185 (209)
                      +++ .+++.+++||+|+++.|++
T Consensus       149 ~~~-~~~~~~~~~~~e~~~~l~~  170 (171)
T 1weh_A          149 PED-VGLLRVVADEEDLRRFLRS  170 (171)
T ss_dssp             HHH-HTTSEECCSHHHHHHHHHT
T ss_pred             hhh-cCeEEEeCCHHHHHHHHHh
Confidence            976 4888999999999999875

>3gh1_A Predicted nucleotide-binding protein; structural genomics, protein structure initiative; 1.90A {Vibrio cholerae o1 biovar el tor str} PDB: 2pmb_A

Probab=100.00  E-value=4e-41  Score=304.28  Aligned_cols=165  Identities=19%  Similarity=0.266  Sum_probs=139.3

Q ss_pred             CcHHHHH-HHHHHHHHHHcCCCEEEccCCccHHHHHHHHHHhC-------CCcEEEEecCC-CcccccccCCCCCCCccc
Q 028413            4 DHPHYLQ-SFELGGEIARLLDCTTWSGAGPGLMDAVTKGAMQA-------GKPVGGFKVGK-EAGEWTASNFHPYLPLET   74 (209)
Q Consensus         4 ~~p~y~~-A~~LG~~La~~g~~~V~~GG~~GlM~ava~ga~~~-------gG~viGi~~~~-~~~~~~~~~~n~~l~~e~   74 (209)
                      .+|.|.+ |++||++||++|..+||||| +|+|+|+++||..+       ||.|+||+|.. ...    +.+|++++  .
T Consensus       158 ~~p~yye~A~eLGr~LA~~G~~LVtGGG-~GLMeAa~aGA~~a~a~qr~aGG~vIGIiP~~L~~~----E~~N~~vt--e  230 (462)
T 3gh1_A          158 INEVEYQYTREVGHELGLRELNICTGCG-PGAMEGPMKGAAVGHAKQRYSEYRYLGLTEPSIIAA----EPPNPIVN--E  230 (462)
T ss_dssp             CCHHHHHHHHHHHHHHHHTTCEEEECCS-SGGGTHHHHHHHHHHHHTTCTTCCEEEEECTTTTTT----SCCCTTCS--E
T ss_pred             CCHHHHHHHHHHHHHHHHCCCEEEeCCc-HHHHHHHHHHHHHhccccccCCCeEEEEccchhhhh----hccCCCCC--e
Confidence            4555555 89999999999776666555 99999999999886       89999999743 222    34699997  5


Q ss_pred             eeeccchHHHHHHhHhhhhhcCCCCccEEEEeCCCcccHHHHHHHHHHHHhhhhcCCCCccEEEEeC---CccchHHHHH
Q 028413           75 YLTCRFFSARKHGLIDCAVRNDSCDRTAVVALPGGVGTLDEMFEILALIQLERIGSELPVPFLVMNY---DSFYKKLLDF  151 (209)
Q Consensus        75 ~i~~~~~~~Rk~~m~~~~~~~~~~~sDa~I~lPGG~GTLeEl~e~~t~~ql~~~~~~~~kPiilln~---~g~w~~l~~~  151 (209)
                      ++++++|++||..|++.|        ||||+||||+|||||+||+|||.|++. ++.++|||||+|+   +|||+++++|
T Consensus       231 liiv~~m~~RK~~mv~~S--------DAfIaLPGG~GTLEELfE~LTw~qLgt-gk~h~kPIVLln~~~~~gYwd~Ll~f  301 (462)
T 3gh1_A          231 LVIMPDIEKRLEAFVRMA--------HGIIIFPGGPGTAEELLYILGIMMHPE-NADQPMPIVLTGPKQSEAYFRSLDKF  301 (462)
T ss_dssp             EEECSSHHHHHHHHHHHC--------SEEEECSCSHHHHHHHHHHHHHHTSGG-GTTCCCCEEEEECGGGHHHHHHHHHH
T ss_pred             eEEeCCHHHHHHHHHHHC--------CEEEEcCCCcchHHHHHHHHHHHhccc-CcCCCCCEEEEcCCCcccHHHHHHHH
Confidence            677899999999999997        999999999999999999999998874 3346899999998   8999999999


Q ss_pred             HHhHHHcCCCChhcccccEEEeCCHHHHHHHHHhhhcC
Q 028413          152 LGDCEDWGTVAKDEVASLWKICDSNSEALSYLAEFYDL  189 (209)
Q Consensus       152 l~~~~~~gfi~~~~~~~~i~~~~~~ee~~~~l~~~~~~  189 (209)
                      +++++.+++     ..+++.+++|++|+++.|++|++.
T Consensus       302 L~~~v~eg~-----~~~~~iv~DdpeEvl~~i~~~~~~  334 (462)
T 3gh1_A          302 ITDTLGEAA-----RKHYSIAIDNPAEAARIMSNAMPL  334 (462)
T ss_dssp             HHHHHCGGG-----GGGCEEEESCHHHHHHHHHHHHHH
T ss_pred             HHHHhhhhh-----hhccEEEcCCHHHHHHHHHHHHHH
Confidence            999887653     445667999999999999998653

>3bq9_A Predicted rossmann fold nucleotide-binding domain containing protein; structural genomics, PSI-2, protein structure initiative; 1.80A {Idiomarina baltica}

Probab=100.00  E-value=2.1e-39  Score=294.68  Aligned_cols=162  Identities=20%  Similarity=0.306  Sum_probs=135.2

Q ss_pred             CcHHHHHHHHHHHHHHHcCCCEEEccCCccHHHHHHHHHHhC-------CCcEEEEecCC-CcccccccCCCCCCCccce
Q 028413            4 DHPHYLQSFELGGEIARLLDCTTWSGAGPGLMDAVTKGAMQA-------GKPVGGFKVGK-EAGEWTASNFHPYLPLETY   75 (209)
Q Consensus         4 ~~p~y~~A~~LG~~La~~g~~~V~~GG~~GlM~ava~ga~~~-------gG~viGi~~~~-~~~~~~~~~~n~~l~~e~~   75 (209)
                      ++|.|+.|++||++||++|..+| +||++|+|+++++||..+       ||+|+||+|.. ...    +.+|++++  .+
T Consensus       157 ~~~~Ye~A~eLGr~LA~~G~~LV-tGGG~GlMEaa~aGA~~a~s~qr~~GG~vIGIiP~~L~~~----E~~N~~vt--el  229 (460)
T 3bq9_A          157 NEIEYKYTKDVGYHIGLRGLNIC-TGCGPGAMKGPMKGATIGHAKQRVEGGRYLGLTEPGIIAA----EPPNPIVN--EL  229 (460)
T ss_dssp             CHHHHHHHHHHHHHHHHTTCEEE-ECCSSGGGTHHHHHHHHHHHHTTCSSCCEEEEECTTTTTT----SCCCTTCS--EE
T ss_pred             CCHHHHHHHHHHHHHHHCCCEEE-eCCcHHHhhHHHhhHHhhcccccCCCCEEEEEeChhhhhh----hhcCCCCC--eE
Confidence            56788779999999999976555 555579998888888776       99999999853 222    34699997  56


Q ss_pred             eeccchHHHHHHhHhhhhhcCCCCccEEEEeCCCcccHHHHHHHHHHHHhhhhcCCCCccEEEEe---CCccchHHHHHH
Q 028413           76 LTCRFFSARKHGLIDCAVRNDSCDRTAVVALPGGVGTLDEMFEILALIQLERIGSELPVPFLVMN---YDSFYKKLLDFL  152 (209)
Q Consensus        76 i~~~~~~~Rk~~m~~~~~~~~~~~sDa~I~lPGG~GTLeEl~e~~t~~ql~~~~~~~~kPiilln---~~g~w~~l~~~l  152 (209)
                      +++++|++||..|++.|        ||||+||||+|||||+|++|||.|++. ++.++||||++|   ++|||+++++|+
T Consensus       230 Iiv~~m~eRK~~mv~~S--------DAfIaLPGG~GTLeELfEaLT~~QLg~-~k~~~kPVVLlg~~n~~gywd~Ll~~l  300 (460)
T 3bq9_A          230 VILPDIEKRLEAFVRCA--------HGIVIFPGGAGTAEELLYLLGILMHPD-NQRQSLPVILTGPASSRDYFEALDEFI  300 (460)
T ss_dssp             EECSSHHHHHHHHHHHC--------SEEEECSCSHHHHHHHHHHHHHHTSGG-GTTCCCCEEEEECGGGHHHHHHHHHHH
T ss_pred             EEECCHHHHHHHHHHhC--------CEEEEcCCCcchHHHHHHHHHHHhhcc-ccCCCCCEEEEecCCccchhhHHHHHH
Confidence            77899999999999997        999999999999999999999999876 333589999998   589999999999


Q ss_pred             HhHHHcCCCChhcccccEEEeCCHHHHHHHHHhh
Q 028413          153 GDCEDWGTVAKDEVASLWKICDSNSEALSYLAEF  186 (209)
Q Consensus       153 ~~~~~~gfi~~~~~~~~i~~~~~~ee~~~~l~~~  186 (209)
                      ++++.+     ++...++.+++||+|+++.++++
T Consensus       301 ~~~l~~-----~~~~~~iiv~ddpeEal~~l~~~  329 (460)
T 3bq9_A          301 GATIGD-----EARQLYKIIIDDPAAVAQHMHAG  329 (460)
T ss_dssp             HHHTCT-----TGGGGCEEEESCHHHHHHHHHHH
T ss_pred             HHHhcc-----hhhcCcEEEeCCHHHHHHHHHHH
Confidence            988764     23455677899999999988765

>1rcu_A Conserved hypothetical protein VT76; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.50A {Thermotoga maritima} SCOP: c.129.1.1

Probab=100.00  E-value=2.5e-37  Score=255.77  Aligned_cols=152  Identities=21%  Similarity=0.236  Sum_probs=128.2

Q ss_pred             CcHHHHHHHHHHHHHHHcCCCEEEccCCccHHHHHHHHHHhCCCcEEEEecCCCcccccccCCCCCCCccceeec-cchH
Q 028413            4 DHPHYLQSFELGGEIARLLDCTTWSGAGPGLMDAVTKGAMQAGKPVGGFKVGKEAGEWTASNFHPYLPLETYLTC-RFFS   82 (209)
Q Consensus         4 ~~p~y~~A~~LG~~La~~g~~~V~~GG~~GlM~ava~ga~~~gG~viGi~~~~~~~~~~~~~~n~~l~~e~~i~~-~~~~   82 (209)
                      +++.|+.|++||++||++|..+| +||++|+|+|+++||+++||.||||+|..       +..|++.+  ..+++ .+|+
T Consensus        40 ~~~~~~~A~~lg~~LA~~G~~vV-sGg~~GiM~aa~~gAl~~GG~~iGVlP~e-------~~~~~~~~--~~~~~~~~f~  109 (195)
T 1rcu_A           40 VSELRDICLELGRTLAKKGYLVF-NGGRDGVMELVSQGVREAGGTVVGILPDE-------EAGNPYLS--VAVKTGLDFQ  109 (195)
T ss_dssp             TGGGHHHHHHHHHHHHHTTCEEE-ECCSSHHHHHHHHHHHHTTCCEEEEESTT-------CCCCTTCS--EEEECCCCHH
T ss_pred             cHHHHHHHHHHHHHHHHCCCEEE-eCCHHHHHHHHHHHHHHcCCcEEEEeCCc-------ccCCCCcc--eeeecCCCHH
Confidence            33556669999999999976555 58999999999999999999999999862       12477743  44443 5899


Q ss_pred             HHHHHhHhhhhhcCCCCccEEEEeCCCcccHHHHHHHHHHHHhhhhcCCCCccEEEEeCCccchHHHHHHHhHHHcC-CC
Q 028413           83 ARKHGLIDCAVRNDSCDRTAVVALPGGVGTLDEMFEILALIQLERIGSELPVPFLVMNYDSFYKKLLDFLGDCEDWG-TV  161 (209)
Q Consensus        83 ~Rk~~m~~~~~~~~~~~sDa~I~lPGG~GTLeEl~e~~t~~ql~~~~~~~~kPiilln~~g~w~~l~~~l~~~~~~g-fi  161 (209)
                      +||++|+++|        |+||++|||+|||+|+|++|++          +|||+++|.+|||+++   |++++++| |+
T Consensus       110 ~Rk~~m~~~s--------da~IvlpGG~GTL~E~~eal~~----------~kPV~lln~~g~w~~~---l~~~~~~G~fi  168 (195)
T 1rcu_A          110 MRSFVLLRNA--------DVVVSIGGEIGTAIEILGAYAL----------GKPVILLRGTGGWTDR---ISQVLIDGKYL  168 (195)
T ss_dssp             HHHHHHHTTC--------SEEEEESCCHHHHHHHHHHHHT----------TCCEEEETTSCHHHHH---GGGGCBTTTBS
T ss_pred             HHHHHHHHhC--------CEEEEecCCCcHHHHHHHHHhc----------CCCEEEECCCCccHHH---HHHHHHcCCcC
Confidence            9999999987        9999999999999999999873          5899999989999986   46778888 99


Q ss_pred             ChhcccccEEEeCCHHHHHHHHHhhh
Q 028413          162 AKDEVASLWKICDSNSEALSYLAEFY  187 (209)
Q Consensus       162 ~~~~~~~~i~~~~~~ee~~~~l~~~~  187 (209)
                      ++++ .+++.+++|++|+++.|++|+
T Consensus       169 ~~~~-~~~i~~~~~~ee~~~~l~~~~  193 (195)
T 1rcu_A          169 DNRR-IVEIHQAWTVEEAVQIIEQIL  193 (195)
T ss_dssp             STTC-CSCEEEESSHHHHHHHHHTC-
T ss_pred             CHHH-cCeEEEeCCHHHHHHHHHHHh
Confidence            9975 588999999999999998874

>2iz6_A Molybdenum cofactor carrier protein; metal transport; 1.60A {Chlamydomonas reinhardtii} PDB: 2iz5_A 2iz7_A

Probab=100.00  E-value=2.3e-34  Score=234.62  Aligned_cols=147  Identities=22%  Similarity=0.180  Sum_probs=122.3

Q ss_pred             CcHHHHH-HHHHHHHHHHcCCCEEEccCCccHHHHHHHHHHhCCCcEEEEecCCCcccccccCCCCCCCccceeeccchH
Q 028413            4 DHPHYLQ-SFELGGEIARLLDCTTWSGAGPGLMDAVTKGAMQAGKPVGGFKVGKEAGEWTASNFHPYLPLETYLTCRFFS   82 (209)
Q Consensus         4 ~~p~y~~-A~~LG~~La~~g~~~V~~GG~~GlM~ava~ga~~~gG~viGi~~~~~~~~~~~~~~n~~l~~e~~i~~~~~~   82 (209)
                      .+|.|.+ |++||++||++|..+|+|||.+|+|+|+++||+++||+|+||+|... .    +.+|++++  ..+++.+|+
T Consensus        26 ~~~~~~~~A~~lg~~La~~g~~lVsGGg~~Gim~aa~~gAl~~gG~tigVlP~~~-~----~~~~~~~~--~~i~~~~~~   98 (176)
T 2iz6_A           26 TAENQLVMANELGKQIATHGWILLTGGRSLGVMHEAMKGAKEAGGTTIGVLPGPD-T----SEISDAVD--IPIVTGLGS   98 (176)
T ss_dssp             CCHHHHHHHHHHHHHHHHTTCEEEEECSSSSHHHHHHHHHHHTTCCEEEEECC----------CCTTCS--EEEECCCCS
T ss_pred             CCHHHHHHHHHHHHHHHHCCCEEEECCCccCHhHHHHHHHHHcCCEEEEEeCchh-h----hhhccCCc--eeEEcCCHH
Confidence            4566666 89999999999877777666699999999999999999999998542 1    24588886  466779999


Q ss_pred             HHHHHhHhhhhhcCCCCccEEEEeCCCcccHHHHHHHHHHHHhhhhcCCCCccEEEEeCCccchHHHHHHHhHHHcCCCC
Q 028413           83 ARKHGLIDCAVRNDSCDRTAVVALPGGVGTLDEMFEILALIQLERIGSELPVPFLVMNYDSFYKKLLDFLGDCEDWGTVA  162 (209)
Q Consensus        83 ~Rk~~m~~~~~~~~~~~sDa~I~lPGG~GTLeEl~e~~t~~ql~~~~~~~~kPiilln~~g~w~~l~~~l~~~~~~gfi~  162 (209)
                      +||++|+++|        |+||++|||+|||+|++++|.          ++|||+++|.   |+         .++||++
T Consensus        99 ~Rk~~m~~~s--------da~IvlpGg~GTL~E~~~al~----------~~kpV~~l~~---~~---------~~~gfi~  148 (176)
T 2iz6_A           99 ARDNINALSS--------NVLVAVGMGPGTAAEVALALK----------AKKPVVLLGT---QP---------EAEKFFT  148 (176)
T ss_dssp             SSCCCCGGGC--------SEEEEESCCHHHHHHHHHHHH----------TTCCEEEESC---CH---------HHHHHHH
T ss_pred             HHHHHHHHhC--------CEEEEecCCccHHHHHHHHHH----------hCCcEEEEcC---cc---------cccccCC
Confidence            9999999997        999999999999999999982          2699999985   65         4456777


Q ss_pred             hhcccccEEEeCCHHHHHHHHHhhhc
Q 028413          163 KDEVASLWKICDSNSEALSYLAEFYD  188 (209)
Q Consensus       163 ~~~~~~~i~~~~~~ee~~~~l~~~~~  188 (209)
                      +++ .+.+.+++||+|+++.|++++.
T Consensus       149 ~~~-~~~i~~~~~~~e~~~~l~~~~~  173 (176)
T 2iz6_A          149 SLD-AGLVHVAADVAGAIAAVKQLLA  173 (176)
T ss_dssp             HHC-TTTEEEESSHHHHHHHHHHHHH
T ss_pred             hhh-cCeEEEcCCHHHHHHHHHHHHH
Confidence            754 5788999999999999999864

>3maj_A DNA processing chain A; MCSG, PSI-2, structural genomics, protein structure initiati midwest center for structural genomics; HET: DNA; 2.05A {Rhodopseudomonas palustris}

Probab=98.26  E-value=2.7e-05  Score=69.88  Aligned_cols=147  Identities=13%  Similarity=0.110  Sum_probs=100.5

Q ss_pred             HHHH-H-HHHHHHHHHHcCCCEEEccCCccHHHHHHHHHHhCCCcEEEEecC-CC---cccc-------cc-c--CCCCC
Q 028413            6 PHYL-Q-SFELGGEIARLLDCTTWSGAGPGLMDAVTKGAMQAGKPVGGFKVG-KE---AGEW-------TA-S--NFHPY   69 (209)
Q Consensus         6 p~y~-~-A~~LG~~La~~g~~~V~~GG~~GlM~ava~ga~~~gG~viGi~~~-~~---~~~~-------~~-~--~~n~~   69 (209)
                      ..|- + |++|++.|+++ +..|++|+--|+..++.+||+++|  +|+|+.. ++   |.+.       .. .  -..+|
T Consensus       139 s~yG~~~a~~l~~~La~~-g~~VVSGlA~GID~~AH~~AL~~g--TIaVLg~Gld~~YP~~n~~L~~~I~~~~G~liSE~  215 (382)
T 3maj_A          139 SGAGLKFAGQLAADLGAA-GFVVISGLARGIDQAAHRASLSSG--TVAVLAGGHDKIYPAEHEDLLLDIIQTRGAAISEM  215 (382)
T ss_dssp             CHHHHHHHHHHHHHHHHH-TCEEEECCCTTHHHHHHHHHTTTC--EEEECSSCTTSCSSGGGHHHHHHHHHTTCEEEECS
T ss_pred             CHHHHHHHHHHHHHHHHC-CcEEEeCCccCHHHHHHHHHHhCC--eEEEECCCcCccCCHhhHHHHHHHHHhCCcEEecC
Confidence            3454 3 79999999999 568899999999999999999987  9999852 11   1110       00 0  00111


Q ss_pred             CCccceeeccchHHHHHHhHhhhhhcCCCCccEEEEeCCC--cccHHHHHHHHHHHHhhhhcCCCCccEEEEeCCccchH
Q 028413           70 LPLETYLTCRFFSARKHGLIDCAVRNDSCDRTAVVALPGG--VGTLDEMFEILALIQLERIGSELPVPFLVMNYDSFYKK  147 (209)
Q Consensus        70 l~~e~~i~~~~~~~Rk~~m~~~~~~~~~~~sDa~I~lPGG--~GTLeEl~e~~t~~ql~~~~~~~~kPiilln~~g~w~~  147 (209)
                      .+ ........|..|++++.-+|        +++|+.-.+  .|||...-.++..          .+||..+- ....++
T Consensus       216 pp-g~~p~~~~Fp~RNRiIagLS--------~~vvVvEA~~kSGsliTA~~Ale~----------gR~VfavP-G~i~~~  275 (382)
T 3maj_A          216 PL-GHVPRGKDFPRRNRLISGAS--------VGVAVIEAAYRSGSLITARRAADQ----------GREVFAVP-GSPLDP  275 (382)
T ss_dssp             CT-TCCCCTTHHHHHHHHHHHHC--------SCEEECCCCTTCTHHHHHHHHHHH----------TCCEEECC-CCTTCG
T ss_pred             CC-CCCCCccccHHHHHHHHHhC--------CceEEEecCCCCcHHHHHHHHHHh----------CCcEEEEc-CCCCCc
Confidence            11 00111246889999999987        999998777  7999887766654          47887773 234555


Q ss_pred             HHHHHHhHHHcCCCChhcccccEEEeCCHHHHHHHHHh
Q 028413          148 LLDFLGDCEDWGTVAKDEVASLWKICDSNSEALSYLAE  185 (209)
Q Consensus       148 l~~~l~~~~~~gfi~~~~~~~~i~~~~~~ee~~~~l~~  185 (209)
                      .-.-...++++|.          ..+.+++++++.+..
T Consensus       276 ~s~G~n~LI~~GA----------~lv~~~~Dil~~l~~  303 (382)
T 3maj_A          276 RAAGTNDLIKQGA----------TLITSASDIVEAVAS  303 (382)
T ss_dssp             GGHHHHHHHHTTC----------EECSSHHHHHHHHTT
T ss_pred             ccccHHHHHHCCC----------EEECCHHHHHHHhhh
Confidence            5555666777662          257889999888753

>3uqz_A DNA processing protein DPRA; SAM and rossmann fold, DNA processing protein A, DNA binding; HET: DNA SO4; 2.70A {Streptococcus pneumoniae}

Probab=97.83  E-value=0.00025  Score=61.35  Aligned_cols=141  Identities=16%  Similarity=0.084  Sum_probs=93.0

Q ss_pred             HHHHHHHHHHcCCCEEEccCCccHHHHHHHHHHhCCCcEEEEecC-CC---ccccc-------c--cCCCCCCCccceee
Q 028413           11 SFELGGEIARLLDCTTWSGAGPGLMDAVTKGAMQAGKPVGGFKVG-KE---AGEWT-------A--SNFHPYLPLETYLT   77 (209)
Q Consensus        11 A~~LG~~La~~g~~~V~~GG~~GlM~ava~ga~~~gG~viGi~~~-~~---~~~~~-------~--~~~n~~l~~e~~i~   77 (209)
                      |+++++.|+ + +.+|++|+--|+=.++.++|+++||.+|+|+.. +.   |.+..       .  .-..+|.+ ..-..
T Consensus       125 a~~l~~~La-~-~~~VVSGlA~GID~~AH~~aL~~~g~TIaVl~~Gld~~YP~~n~~L~~~i~~~GlliSE~pp-g~~p~  201 (288)
T 3uqz_A          125 VEKVIQGLE-N-ELVIVSGLAKGIDTAAHMAALQNGGKTIAVIGTGLDVFYPKANKRLQDYIGNDHLVLSEYGP-GEQPL  201 (288)
T ss_dssp             HHHHHHTTT-T-CSEEEECCCTTHHHHHHHHHHHHTCCEEEECSSCTTCCSSGGGHHHHHHHHHHSEEEESSCT-TCCCC
T ss_pred             HHHHHHHHh-h-hheEecCcccCHHHHHHHHHHhcCCCEEEEecccccccCchhhHHHHHHhcccCcEeeccCC-CCCcc
Confidence            789999996 4 478999999999999999999999999999852 11   11100       0  00011111 00112


Q ss_pred             ccchHHHHHHhHhhhhhcCCCCccEEEEeCCC--cccHHHHHHHHHHHHhhhhcCCCCccEEEEeCCccchHHHHHHHhH
Q 028413           78 CRFFSARKHGLIDCAVRNDSCDRTAVVALPGG--VGTLDEMFEILALIQLERIGSELPVPFLVMNYDSFYKKLLDFLGDC  155 (209)
Q Consensus        78 ~~~~~~Rk~~m~~~~~~~~~~~sDa~I~lPGG--~GTLeEl~e~~t~~ql~~~~~~~~kPiilln~~g~w~~l~~~l~~~  155 (209)
                      ...|..|++++.-+|        |+.|+.--+  .|||.=.-.++.          ..+||..+- ....++.-+-...+
T Consensus       202 ~~~Fp~RNRiIagLS--------~~~vVvEA~~~SGsliTA~~Ale----------~gR~VfavP-G~i~~~~s~G~n~L  262 (288)
T 3uqz_A          202 KFHFPARNRIIAGLC--------RGVIVAEAKMRSGSLITCERAME----------EGRDVFAIP-GSILDGLSDGCHHL  262 (288)
T ss_dssp             TTHHHHHHHHHHHHC--------SEEEEESCCTTCHHHHHHHHHHH----------TTCEEEECC-CCSSSSTTHHHHHH
T ss_pred             ccccHHHHHHHHHcC--------CeEEEEecCCCChHHHHHHHHHH----------cCCeEEEEC-CCCCCccchHHHHH
Confidence            356889999999987        999998775  677765443332          257887773 23455555556667


Q ss_pred             HHcCCCChhcccccEEEeCCHHHHHHHH
Q 028413          156 EDWGTVAKDEVASLWKICDSNSEALSYL  183 (209)
Q Consensus       156 ~~~gfi~~~~~~~~i~~~~~~ee~~~~l  183 (209)
                      +++|.          ..+.+++++++.+
T Consensus       263 I~~GA----------~lv~~~~Dil~el  280 (288)
T 3uqz_A          263 IQEGA----------KLVTSGQDVLAEF  280 (288)
T ss_dssp             HHTTC----------EECSSHHHHHHHC
T ss_pred             HHCCC----------EEECCHHHHHHHh
Confidence            77662          2578899887654

>3imk_A Putative molybdenum carrier protein; YP_461806.1, structural genomics, joint center for structural genomics, JCSG; HET: MSE MES PG4 PG6; 1.45A {Syntrophus aciditrophicus SB}

Probab=96.08  E-value=0.11  Score=40.89  Aligned_cols=103  Identities=17%  Similarity=0.120  Sum_probs=68.7

Q ss_pred             CCCEEEccCCccHHHHHHHHHHhCCCcEEEEecCCCcccccccCCCCCCCccceeeccchHHHHHHhHhhhhhcCCCCcc
Q 028413           22 LDCTTWSGAGPGLMDAVTKGAMQAGKPVGGFKVGKEAGEWTASNFHPYLPLETYLTCRFFSARKHGLIDCAVRNDSCDRT  101 (209)
Q Consensus        22 g~~~V~~GG~~GlM~ava~ga~~~gG~viGi~~~~~~~~~~~~~~n~~l~~e~~i~~~~~~~Rk~~m~~~~~~~~~~~sD  101 (209)
                      ...-|++||-.|+=.|+-+.|+++|-..-|..|.-...|... -+..|.-.  ......+..|....++-|        |
T Consensus         7 ~~~kIiSGGQTGvDraALd~A~~~gi~~gGwcP~GR~aEDG~-ip~~Y~L~--E~~~~~y~~Rt~~NV~DS--------D   75 (158)
T 3imk_A            7 AITKIISGGQTGADRAALDFAIKHHIPYGGWVPKGRLAEGGR-VPETYQLQ--EMPTSDYSKRTEKNVLDS--------D   75 (158)
T ss_dssp             CCCEEECCCCTTHHHHHHHHHHHTTCCEECEECGGGCCTTSS-CCTTSCCE--ECSSCCHHHHHHHHHHTS--------S
T ss_pred             cceEEeeCCcchHHHHHHHHHHHcCCCcceecCCCcccccCC-CCcccccc--ccCCCCHHHHHHHhhhhc--------C
Confidence            356789999999999999999999988888888421112110 11223211  122356789999999876        9


Q ss_pred             EEEEeC-CCcccHHHHHHHHHHHHhhhhcCCCCccEEEEeCCc
Q 028413          102 AVVALP-GGVGTLDEMFEILALIQLERIGSELPVPFLVMNYDS  143 (209)
Q Consensus       102 a~I~lP-GG~GTLeEl~e~~t~~ql~~~~~~~~kPiilln~~g  143 (209)
                      +-++|- |..-.=.++...++..        +.||+.+++.+.
T Consensus        76 gTLI~~~g~lsGGT~lT~~~a~~--------~~KP~l~i~l~~  110 (158)
T 3imk_A           76 GTLIISHGILKGGSALTEFFAEQ--------YKKPCLHIDLDR  110 (158)
T ss_dssp             EEEEEESSSCCHHHHHHHHHHHH--------TTCCEEEEETTT
T ss_pred             eEEEEecCCCCCchHHHHHHHHH--------hCCCEEEEeccc
Confidence            988887 6654444444444432        369999998765

>2nx2_A Hypothetical protein YPSA; structural genomics, unknown function, PSI, protein structure initiative; 2.00A {Bacillus subtilis} SCOP: c.129.1.2

Probab=92.95  E-value=2.8  Score=33.20  Aligned_cols=114  Identities=11%  Similarity=-0.052  Sum_probs=67.7

Q ss_pred             HHHHHHHHcCCCEEEccCCccHHHHHHHHHHh-----CCCcEEEEecCCCcc-cccccCCC------CCCC-----ccce
Q 028413           13 ELGGEIARLLDCTTWSGAGPGLMDAVTKGAMQ-----AGKPVGGFKVGKEAG-EWTASNFH------PYLP-----LETY   75 (209)
Q Consensus        13 ~LG~~La~~g~~~V~~GG~~GlM~ava~ga~~-----~gG~viGi~~~~~~~-~~~~~~~n------~~l~-----~e~~   75 (209)
                      .|-+++ +.|..-+++||..|.=-.+++.|++     .+.+.+-|+|..... .|+.....      ...+     ++..
T Consensus        35 ~l~~l~-~~G~~~~isgga~G~D~~aae~vl~lk~~y~~i~L~~v~Pf~~~~~~w~~~~~~~y~~ll~~aD~v~~l~~~~  113 (181)
T 2nx2_A           35 RLIAFL-DEGLEWILISGQLGVELWAAEAAYDLQEEYPDLKVAVITPFYEQEKNWKEPNKEQYEAVLAQADYEASLTHRP  113 (181)
T ss_dssp             HHHHHH-TTTCCEEEECCCTTHHHHHHHHHHTTTTTCTTCEEEEEESSBCTTTTSCHHHHHHHHHHHHHCSEEEESSSSB
T ss_pred             HHHHHH-hCCCcEEEECCCccHHHHHHHHHHHhccccCCceEEEEecccchhhCCCHHHHHHHHHHHHhCCeEEecccCC
Confidence            445544 3467889999999999999999999     356777777743321 11100000      0000     0000


Q ss_pred             e-eccchHHHHHHhHhhhhhcCCCCccEEEEeC-CCc--ccHHHHHHHHHHHHhhhhcCCCCccEEEEeC
Q 028413           76 L-TCRFFSARKHGLIDCAVRNDSCDRTAVVALP-GGV--GTLDEMFEILALIQLERIGSELPVPFLVMNY  141 (209)
Q Consensus        76 i-~~~~~~~Rk~~m~~~~~~~~~~~sDa~I~lP-GG~--GTLeEl~e~~t~~ql~~~~~~~~kPiilln~  141 (209)
                      . ....+..|.+.|++.|        |+.|++- |..  ||-.=+-.+....+  +    +.+|+.+++.
T Consensus       114 y~~~~~~~~rn~~mvd~s--------D~liavyDg~~~GgT~~~v~~A~~~~~--~----~~~pv~~I~~  169 (181)
T 2nx2_A          114 YESPLQFKQKNQFFIDKS--------DGLLLLYDPEKEGSPKYMLGTAEKRRE--Q----DGYPIYFITM  169 (181)
T ss_dssp             CCCHHHHHHHHHHHHHHS--------SEEEEECCTTTCCTTHHHHHHHHHHHH--H----HCCCEEEECH
T ss_pred             CCCHHHHHHHHHHHHHHC--------CEEEEEEcCCCCCCHHHHHHHHHHhcc--c----cCCeEEEEcH
Confidence            0 0123679999999987        9999998 443  67654444433221  1    2589999974

>2f62_A Nucleoside 2-deoxyribosyltransferase; SGPP, structural genomics, PSI, S genomics of pathogenic protozoa consortium; HET: 12M; 1.50A {Trypanosoma brucei} SCOP: c.23.14.1 PDB: 2a0k_A* 2f2t_A* 2f64_A* 2f67_A*

Probab=92.68  E-value=0.19  Score=39.51  Aligned_cols=88  Identities=19%  Similarity=0.134  Sum_probs=51.1

Q ss_pred             hHHHHHHhHhhhhhcCCCCccEEEEe--C-----CCcccHHHHHHHHHHHHhhhhcCCCCccEEEEeCCccchHHHHHHH
Q 028413           81 FSARKHGLIDCAVRNDSCDRTAVVAL--P-----GGVGTLDEMFEILALIQLERIGSELPVPFLVMNYDSFYKKLLDFLG  153 (209)
Q Consensus        81 ~~~Rk~~m~~~~~~~~~~~sDa~I~l--P-----GG~GTLeEl~e~~t~~ql~~~~~~~~kPiilln~~g~w~~l~~~l~  153 (209)
                      +..+....++.|        |++|++  |     =-.||.-|+-.++.+          .|||+++..+  +.++.+...
T Consensus        57 i~~~d~~~i~~a--------D~vVA~ldpf~g~~~D~GTafEiGyA~Al----------gKPVi~l~~d--~r~~~~~~~  116 (161)
T 2f62_A           57 IRQKNIQMIKDC--------DAVIADLSPFRGHEPDCGTAFEVGCAAAL----------NKMVLTFTSD--RRNMREKYG  116 (161)
T ss_dssp             HHHHHHHHHHHC--------SEEEEECCCCSSSSCCHHHHHHHHHHHHT----------TCEEEEECSC--CSCHHHHHT
T ss_pred             HHHHHHHHHHhC--------CEEEEEecCCCCCCCCCcHHHHHHHHHHC----------CCEEEEEEcC--chhhhhhcc
Confidence            355666677765        999999  4     357999999877654          5899998643  233222111


Q ss_pred             hHH-HcCCC-----Chhc--ccccEEEeCCHHHHHHHHHhhhc
Q 028413          154 DCE-DWGTV-----AKDE--VASLWKICDSNSEALSYLAEFYD  188 (209)
Q Consensus       154 ~~~-~~gfi-----~~~~--~~~~i~~~~~~ee~~~~l~~~~~  188 (209)
                      ... .+|+.     .+.+  ....+.+.++.+++++.|.+++.
T Consensus       117 ~~~d~~g~~vedf~~~~NLMl~~~~~~~~~~~~~l~~l~~~~~  159 (161)
T 2f62_A          117 SGVDKDNLRVEGFGLPFNLMLYDGVEVFDSFESAFKYFLANFP  159 (161)
T ss_dssp             SSBCTTSCBCCCSSCSSCGGGCCSSCEESSHHHHHHHHHHHSC
T ss_pred             cccccccccccccCCcchhhhhhhheeeCCHHHHHHHHHHhhc
Confidence            000 01100     0000  00112267999999999988743

>2khz_A C-MYC-responsive protein RCL; flexible loop, nucleus, phosphoprotein, nuclear protein; NMR {Rattus norvegicus} PDB: 2klh_A*

Probab=92.10  E-value=0.35  Score=37.81  Aligned_cols=82  Identities=18%  Similarity=0.251  Sum_probs=50.5

Q ss_pred             HHHHHHhHhhhhhcCCCCccEEEEeCC--CcccHHHHHHHHHHHHhhhhcCCCCccEEEEeCCccchHHHHHHHhHHHcC
Q 028413           82 SARKHGLIDCAVRNDSCDRTAVVALPG--GVGTLDEMFEILALIQLERIGSELPVPFLVMNYDSFYKKLLDFLGDCEDWG  159 (209)
Q Consensus        82 ~~Rk~~m~~~~~~~~~~~sDa~I~lPG--G~GTLeEl~e~~t~~ql~~~~~~~~kPiilln~~g~w~~l~~~l~~~~~~g  159 (209)
                      ..|...+++.|        |++|++++  ..||.-|+-.+..+          .|||+++..+.- ..   -+..|+ +|
T Consensus        68 ~~~d~~~i~~a--------D~vva~~~~~d~Gt~~EiGyA~al----------gKPVi~l~~~~~-~~---~~n~M~-~g  124 (165)
T 2khz_A           68 HEQDLNWLQQA--------DVVVAEVTQPSLGVGYELGRAVAL----------GKPILCLFRPQS-GR---VLSAMI-RG  124 (165)
T ss_dssp             HHHHHHHHHHC--------SEEEEECSSCCHHHHHHHHHHHHT----------CSSEEEEECTTT-TC---CCCHHH-HH
T ss_pred             HHHHHHHHHhC--------CEEEEECCCCCCCHHHHHHHHHHC----------CCEEEEEEcCCC-CC---cchhhh-cc
Confidence            56666677776        99999975  57999999876653          589999854331 11   122232 23


Q ss_pred             CCChhcccccEEEeCCHHHHHHHHHhhhcC
Q 028413          160 TVAKDEVASLWKICDSNSEALSYLAEFYDL  189 (209)
Q Consensus       160 fi~~~~~~~~i~~~~~~ee~~~~l~~~~~~  189 (209)
                      .-.-+.+ +.+ .. |.+|+.+.|.+|+..
T Consensus       125 ~~~~~~~-~~~-~y-~~~el~~~l~~~~~~  151 (165)
T 2khz_A          125 AADGSRF-QVW-DY-AEGEVETMLDRYFEA  151 (165)
T ss_dssp             TCCSSSE-EEE-EC-CTTTHHHHHHHHHHT
T ss_pred             cCcccee-EEE-ec-CHHHHHHHHHHHHHh
Confidence            2111112 222 33 788899999888653

>3ehd_A Uncharacterized conserved protein; PSI,MCSG,PF05014, structural genomics, protein structure INI midwest center for structural genomics; HET: MSE; 2.15A {Enterococcus faecalis}

Probab=91.43  E-value=0.78  Score=36.01  Aligned_cols=82  Identities=18%  Similarity=0.210  Sum_probs=49.4

Q ss_pred             HHHHHHhHhhhhhcCCCCccEEEEe-CCC---cccHHHHHHHHHHHHhhhhcCCCCccEEEEeCCccch------HHHHH
Q 028413           82 SARKHGLIDCAVRNDSCDRTAVVAL-PGG---VGTLDEMFEILALIQLERIGSELPVPFLVMNYDSFYK------KLLDF  151 (209)
Q Consensus        82 ~~Rk~~m~~~~~~~~~~~sDa~I~l-PGG---~GTLeEl~e~~t~~ql~~~~~~~~kPiilln~~g~w~------~l~~~  151 (209)
                      ..+....++.|        |++|++ .|.   .||.-|+-.++.+          .|||+++-.+ +..      ..+..
T Consensus        60 ~~~D~~~i~~a--------D~viA~ldg~~~D~Gt~~EiG~A~a~----------gkPVi~~~~D-~R~~g~~~~~~~~~  120 (162)
T 3ehd_A           60 ALADTENVLAS--------DLLVALLDGPTIDAGVASEIGVAYAK----------GIPVVALYTD-SRQQGADNHQKLDA  120 (162)
T ss_dssp             HHHHHHHHHTC--------SEEEEECCSSSCCHHHHHHHHHHHHT----------TCCEEEECCC-GGGCCTTCHHHHHH
T ss_pred             HHHHHHHHHHC--------CEEEEECCCCCCCCCHHHHHHHHHHC----------CCEEEEEEcC-cccccCCcchhhhh
Confidence            45555556654        999986 554   8999999877653          5899998543 221      11111


Q ss_pred             HHhHHHc----------CCCChhcccccEEEeCCHHHHHHHHHhhh
Q 028413          152 LGDCEDW----------GTVAKDEVASLWKICDSNSEALSYLAEFY  187 (209)
Q Consensus       152 l~~~~~~----------gfi~~~~~~~~i~~~~~~ee~~~~l~~~~  187 (209)
                      ++...+.          |.|..     .=.++.|.+|+++.|.+++
T Consensus       121 ~~~~~e~~f~~~N~~~~G~i~~-----~g~~~~~~~~~~~~l~~~~  161 (162)
T 3ehd_A          121 LNEIAENQFHYLNLYTVGLIKL-----NGRVVSSEEDLLEEIKQRL  161 (162)
T ss_dssp             TTSTTCCCSCCCCHHHHHHHHT-----TEEEESSHHHHHHHHHHTC
T ss_pred             hHHHhhhhhhhhhHHHhhhHHh-----CCeEEeCHHHHHHHHHHHh
Confidence            1111111          11111     1256899999999999874

>1f8y_A Nucleoside 2-deoxyribosyltransferase; active site, alpha/beta protein, biocatalyst, X- RAY crystallography; HET: 5MD; 2.40A {Lactobacillus leichmannii} SCOP: c.23.14.1 PDB: 1f8x_A*

Probab=85.08  E-value=0.94  Score=35.22  Aligned_cols=43  Identities=16%  Similarity=-0.040  Sum_probs=31.9

Q ss_pred             HHHHHHhHhhhhhcCCCCccEEEEeCCC----cccHHHHHHHHHHHHhhhhcCCCCccEEEEeCC
Q 028413           82 SARKHGLIDCAVRNDSCDRTAVVALPGG----VGTLDEMFEILALIQLERIGSELPVPFLVMNYD  142 (209)
Q Consensus        82 ~~Rk~~m~~~~~~~~~~~sDa~I~lPGG----~GTLeEl~e~~t~~ql~~~~~~~~kPiilln~~  142 (209)
                      .++....++.|        |++|++.-|    .||.-|+-.++.+          .|||+++..+
T Consensus        69 ~~~D~~~i~~a--------D~vvA~ldg~~~D~GT~~EiGyA~A~----------gkPVv~~~~~  115 (157)
T 1f8y_A           69 YNNDLNGIKTN--------DIMLGVYIPDEEDVGLGMELGYALSQ----------GKYVLLVIPD  115 (157)
T ss_dssp             HHHHHHHHHTS--------SEEEEECCGGGCCHHHHHHHHHHHHT----------TCEEEEEECG
T ss_pred             HHHhHHHHHhC--------CEEEEEcCCCCCCccHHHHHHHHHHC----------CCeEEEEEcC
Confidence            44455555554        999999866    8999999877654          5899998644

>2o6l_A UDP-glucuronosyltransferase 2B7; drug metabolism, rossman, MAD, enzyme, nucleotide binding, sugar,UDP-glucuronosyltransferase, UGT; 1.80A {Homo sapiens}

Probab=84.41  E-value=11  Score=28.05  Aligned_cols=63  Identities=19%  Similarity=0.300  Sum_probs=36.0

Q ss_pred             ccEEEEeCCCcccHHHHHHHHHHHHhhhhcCCCCccEEEEeCCccchHHHHHHHhHHHcCCCChhcccccEEEeC----C
Q 028413          100 RTAVVALPGGVGTLDEMFEILALIQLERIGSELPVPFLVMNYDSFYKKLLDFLGDCEDWGTVAKDEVASLWKICD----S  175 (209)
Q Consensus       100 sDa~I~lPGG~GTLeEl~e~~t~~ql~~~~~~~~kPiilln~~g~w~~l~~~l~~~~~~gfi~~~~~~~~i~~~~----~  175 (209)
                      ||+||. .||.+|+-|.   +..          .+|+|++..  +.+.. ...+.+.+.|.         -..++    +
T Consensus        87 ad~~I~-~~G~~t~~Ea---~~~----------G~P~i~~p~--~~~Q~-~na~~l~~~g~---------g~~~~~~~~~  140 (170)
T 2o6l_A           87 TRAFIT-HGGANGIYEA---IYH----------GIPMVGIPL--FADQP-DNIAHMKARGA---------AVRVDFNTMS  140 (170)
T ss_dssp             EEEEEE-CCCHHHHHHH---HHH----------TCCEEECCC--STTHH-HHHHHHHTTTS---------EEECCTTTCC
T ss_pred             cCEEEE-cCCccHHHHH---HHc----------CCCEEeccc--hhhHH-HHHHHHHHcCC---------eEEeccccCC
Confidence            488885 7888998774   332          489999864  22221 11222332221         11232    7


Q ss_pred             HHHHHHHHHhhhc
Q 028413          176 NSEALSYLAEFYD  188 (209)
Q Consensus       176 ~ee~~~~l~~~~~  188 (209)
                      ++++.+.|.+.+.
T Consensus       141 ~~~l~~~i~~ll~  153 (170)
T 2o6l_A          141 STDLLNALKRVIN  153 (170)
T ss_dssp             HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHc
Confidence            8888888877654

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	209
d1ydhb_	181	c.129.1.1 (B:) Hypothetical protein At5g11950 {Tha	2e-25
d2q4oa1	183	c.129.1.1 (A:8-190) Hypothetical protein At2g37210	3e-24
d1weka_	208	c.129.1.1 (A:) Hypothetical protein TT1465 (TTHA16	3e-21
d1t35a_	179	c.129.1.1 (A:) Hypothetical protein YvdD {Bacillus	2e-20
d1weha_	171	c.129.1.1 (A:) Hypothetical protein TT1887 (TTHA02	9e-16
d1rcua_	170	c.129.1.1 (A:) Hypothetical protein TM1055 {Thermo	7e-15

>d1ydhb_ c.129.1.1 (B:) Hypothetical protein At5g11950 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 181

class: Alpha and beta proteins (a/b)
fold: MCP/YpsA-like
superfamily: MCP/YpsA-like
family: MoCo carrier protein-like
domain: Hypothetical protein At5g11950
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

 Score = 95.2 bits (236), Expect = 2e-25
 Identities = 33/186 (17%), Positives = 63/186 (33%), Gaps = 18/186 (9%)

Query: 1   MGPDHPHYLQSFELGGEIARLLDCTTWSGAGPGLMDAVTKGAMQAGKPVGGFKVGKEAGE 60
            G        + ELG E+ +      + G   GLM  +++   + G  V G         
Sbjct: 13  SGHREVFSDAAIELGNELVKRKIDLVYGGGSVGLMGLISRRVYEGGLHVLGIIPKALMPI 72

Query: 61  WTASNFHPYLPLETYLTCRFFSARKHGLIDCAVRNDSCDRTAVVALPGGVGTLDEMFEIL 120
             +         +  +       +     +           A +ALPGG GT++E+ E++
Sbjct: 73  EISGETVG----DVRVVADMHERKAAMAQEA---------EAFIALPGGYGTMEELLEMI 119

Query: 121 ALIQLERIGSELPVPFLVMNYDSFYKKLLDFLGDCEDWGTVAKDEVASLWKICDSNSEAL 180
              QL            ++N D +Y  LL       + G + K    ++     +  E +
Sbjct: 120 TWSQLGIH----KKTVGLLNVDGYYNNLLALFDTGVEEGFI-KPGARNIVVSAPTAKELM 174

Query: 181 SYLAEF 186
             + E+
Sbjct: 175 EKMEEY 180

>d1weka_ c.129.1.1 (A:) Hypothetical protein TT1465 (TTHA1644) {Thermus thermophilus [TaxId: 274]} Length = 208

class: Alpha and beta proteins (a/b)
fold: MCP/YpsA-like
superfamily: MCP/YpsA-like
family: MoCo carrier protein-like
domain: Hypothetical protein TT1465 (TTHA1644)
species: Thermus thermophilus [TaxId: 274]

 Score = 85.2 bits (210), Expect = 3e-21
 Identities = 53/183 (28%), Positives = 80/183 (43%), Gaps = 20/183 (10%)

Query: 1   MGPDHPHYLQSFELGGEIARLLDCTTWSGAGPGLMDAVTKGAMQAGKPVGGFKVGKEAGE 60
            G  HP Y   + LG  +A        +G GPG+M+AV +GA +     GG  VG     
Sbjct: 44  FGEGHPAYEAGYRLGRALAE-AGFGVVTGGGPGVMEAVNRGAYE----AGGVSVGLNIEL 98

Query: 61  WTASNFHPYLPLETYLTCRFFSARKHGLIDCAVRNDSCDRTAVVALPGGVGTLDEMFEIL 120
                 +PY      L+ R+F  RK   +  AV          V LPGG GTLDE+ E+L
Sbjct: 99  PHEQKPNPYQT--HALSLRYFFVRKVLFVRYAVG--------FVFLPGGFGTLDELSEVL 148

Query: 121 ALIQLERIGSELPVPFLVMNYDSFYKKLLDFLGDCEDWGTVAKDEVASLWKICDSNSEAL 180
            L+Q E++        + +    +++ L+ +L    D   V   E   L+++ D   E +
Sbjct: 149 VLLQTEKV----HRFPVFLLDRGYWEGLVRWLAFLRDQKAV-GPEDLQLFRLTDEPEEVV 203

Query: 181 SYL 183
             L
Sbjct: 204 QAL 206

>d1t35a_ c.129.1.1 (A:) Hypothetical protein YvdD {Bacillus subtilis [TaxId: 1423]} Length = 179

class: Alpha and beta proteins (a/b)
fold: MCP/YpsA-like
superfamily: MCP/YpsA-like
family: MoCo carrier protein-like
domain: Hypothetical protein YvdD
species: Bacillus subtilis [TaxId: 1423]

 Score = 82.1 bits (202), Expect = 2e-20
 Identities = 31/186 (16%), Positives = 61/186 (32%), Gaps = 18/186 (9%)

Query: 1   MGPDHPHYLQSFELGGEIARLLDCTTWSGAGPGLMDAVTKGAMQAGKPVGGFKVGKEAGE 60
            G +  +  ++ ELG  +A       + G+  GLM  +    M+ G    G         
Sbjct: 12  PGGNEAYKRKAAELGVYMAEQGIGLVYGGSRVGLMGTIADAIMENGGTAIGV-------- 63

Query: 61  WTASNFHPYLPLETYLTCRFFSARKHGLIDCAVRNDSCDRTAVVALPGGVGTLDEMFEIL 120
              S       +   LT        H                 +++PGG GT +E+FE+L
Sbjct: 64  -MPSGLFSGEVVHQNLTELIEVNGMHERKAKMSELADG----FISMPGGFGTYEELFEVL 118

Query: 121 ALIQLERIGSELPVPFLVMNYDSFYKKLLDFLGDCEDWGTVAKDEVASLWKICDSNSEAL 180
              Q+         P  + N + +++ ++  +      G   +  +  L        E +
Sbjct: 119 CWAQIGIH----QKPIGLYNVNGYFEPMMKMVKYSIQEGFSNESHL-KLIHSSSRPDELI 173

Query: 181 SYLAEF 186
             +  +
Sbjct: 174 EQMQNY 179

>d1weha_ c.129.1.1 (A:) Hypothetical protein TT1887 (TTHA0294) {Thermus thermophilus [TaxId: 274]} Length = 171

class: Alpha and beta proteins (a/b)
fold: MCP/YpsA-like
superfamily: MCP/YpsA-like
family: MoCo carrier protein-like
domain: Hypothetical protein TT1887 (TTHA0294)
species: Thermus thermophilus [TaxId: 274]

 Score = 69.9 bits (170), Expect = 9e-16
 Identities = 37/183 (20%), Positives = 60/183 (32%), Gaps = 26/183 (14%)

Query: 1   MGPDHPHYLQSFELGGEIARLLDCTTWSGAGPGLMDAVTKGAMQAGKPVGGFKVGKEAGE 60
           + P+ P Y +    G  +A         G   G M+A+ +G    G  V G        E
Sbjct: 12  LSPEDPLYARWVRYGEVLAE-EGFGLACGGYQGGMEALARGVKAKGGLVVGVTAPAFFPE 70

Query: 61  WTASNFHPYLPLETYLTCRFFSARKHGLIDCAVRNDSCDRTAVVALPGGVGTLDEMFEIL 120
               N         ++     +A     I   +   +      +ALPGGVGTL E+    
Sbjct: 71  RRGPN--------PFVDLELPAATLPQRIGRLLDLGAGY----LALPGGVGTLAELVLAW 118

Query: 121 ALIQLERIGSELPVPFLVMNYDSFYKKLLDFLGDCEDWGTVAKDEVASLWKICDSNSEAL 180
            L+ L R           +  D ++  LL   G+          E   L ++     +  
Sbjct: 119 NLLYLRRG------VGRPLAVDPYWLGLLKAHGE-------IAPEDVGLLRVVADEEDLR 165

Query: 181 SYL 183
            +L
Sbjct: 166 RFL 168

>d1rcua_ c.129.1.1 (A:) Hypothetical protein TM1055 {Thermotoga maritima [TaxId: 2336]} Length = 170

class: Alpha and beta proteins (a/b)
fold: MCP/YpsA-like
superfamily: MCP/YpsA-like
family: MoCo carrier protein-like
domain: Hypothetical protein TM1055
species: Thermotoga maritima [TaxId: 2336]

 Score = 67.4 bits (164), Expect = 7e-15
 Identities = 31/183 (16%), Positives = 63/183 (34%), Gaps = 30/183 (16%)

Query: 3   PDHPHYLQSFELGGEIARLLDCTTWSGAGPGLMDAVTKGAMQAGKPVGGFKVGKEAGEWT 62
           P         ELG  +A+      ++G   G+M+ V++G  +AG  V G    +EAG   
Sbjct: 17  PVSELRDICLELGRTLAKK-GYLVFNGGRDGVMELVSQGVREAGGTVVGILPDEEAG--- 72

Query: 63  ASNFHPYLPLETYLTCRFFSARKHGLIDCAVRNDSCDRTAVVALPGGVGTLDEMFEILAL 122
               +PYL +       F   +    +     +         ++ G +GT  E+    AL
Sbjct: 73  ----NPYLSVAVKTGLDF---QMRSFVLLRNADVVV------SIGGEIGTAIEILGAYAL 119

Query: 123 IQLERIGSELPVPFLVMNYDSFYKKLLDFLGDCEDWGTVAKDEVASLWKICDSNSEALSY 182
            +          P +++     +   +  +    D   +    +        +  EA+  
Sbjct: 120 GK----------PVILLRGTGGWTDRISQV--LIDGKYLDNRRI-VEIHQAWTVEEAVQI 166

Query: 183 LAE 185
           + +
Sbjct: 167 IEQ 169

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	209
d1t35a_	179	Hypothetical protein YvdD {Bacillus subtilis [TaxI	100.0
d1ydhb_	181	Hypothetical protein At5g11950 {Thale cress (Arabi	100.0
d2q4oa1	183	Hypothetical protein At2g37210/T2N18.3 {Thale cres	100.0
d1weka_	208	Hypothetical protein TT1465 (TTHA1644) {Thermus th	100.0
d1rcua_	170	Hypothetical protein TM1055 {Thermotoga maritima [	100.0
d1weha_	171	Hypothetical protein TT1887 (TTHA0294) {Thermus th	100.0
d1s2da_	167	Purine transdeoxyribosylase {Lactobacillus helveti	90.71
d1f8ya_	156	Nucleoside 2-deoxyribosyltransferase {Lactobacillu	88.06
d2f62a1	152	Nucleoside 2-deoxyribosyltransferase {Trypanosoma	87.21
d1kyha_	275	Hypothetical protein YxkO {Bacillus subtilis [TaxI	85.22

>d1t35a_ c.129.1.1 (A:) Hypothetical protein YvdD {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: MCP/YpsA-like
superfamily: MCP/YpsA-like
family: MoCo carrier protein-like
domain: Hypothetical protein YvdD
species: Bacillus subtilis [TaxId: 1423]

Probab=100.00  E-value=3.1e-48  Score=315.33  Aligned_cols=165  Identities=19%  Similarity=0.317  Sum_probs=146.4

Q ss_pred             CcHHH-HHHHHHHHHHHHcCCCEEEccCCccHHHHHHHHHHhCCCcEEEEecCCCcccccccCCCCCCCccceeeccchH
Q 028413            4 DHPHY-LQSFELGGEIARLLDCTTWSGAGPGLMDAVTKGAMQAGKPVGGFKVGKEAGEWTASNFHPYLPLETYLTCRFFS   82 (209)
Q Consensus         4 ~~p~y-~~A~~LG~~La~~g~~~V~~GG~~GlM~ava~ga~~~gG~viGi~~~~~~~~~~~~~~n~~l~~e~~i~~~~~~   82 (209)
                      .||.| ++|++||+.||++|+.+|||||..|+|+|+++||+++||+++||+|......   +.+|++++  ..+.+++|+
T Consensus        14 ~~~~~~~~a~~lg~~la~~g~~lv~GGG~~GlMga~a~ga~~~gg~v~gv~~~~l~~~---~~~~~~~~--~~~~~~~~~   88 (179)
T d1t35a_          14 GNEAYKRKAAELGVYMAEQGIGLVYGGSRVGLMGTIADAIMENGGTAIGVMPSGLFSG---EVVHQNLT--ELIEVNGMH   88 (179)
T ss_dssp             SSTHHHHHHHHHHHHHHHTTCEEEECCCCSHHHHHHHHHHHTTTCCEEEEEETTCCHH---HHTTCCCS--EEEEESHHH
T ss_pred             cCCHHHHHHHHHHHHHHHCCCeEEECCCchHHHHHHhcchhhcCCceeccccchhhcc---ccccccce--eeeeeccHH
Confidence            44555 4599999999999999999999999999999999999999999998542211   23588886  567779999


Q ss_pred             HHHHHhHhhhhhcCCCCccEEEEeCCCcccHHHHHHHHHHHHhhhhcCCCCccEEEEeCCccchHHHHHHHhHHHcCCCC
Q 028413           83 ARKHGLIDCAVRNDSCDRTAVVALPGGVGTLDEMFEILALIQLERIGSELPVPFLVMNYDSFYKKLLDFLGDCEDWGTVA  162 (209)
Q Consensus        83 ~Rk~~m~~~~~~~~~~~sDa~I~lPGG~GTLeEl~e~~t~~ql~~~~~~~~kPiilln~~g~w~~l~~~l~~~~~~gfi~  162 (209)
                      +||..|++.|        |+||+||||+|||||+|++|+|.|++.|    +|||+|+|.+|||+++++++++++++||++
T Consensus        89 ~Rk~~m~~~s--------dafI~lPGG~GTLdEl~e~l~~~ql~~~----~kPiil~n~~gfw~~l~~~l~~~~~~gfi~  156 (179)
T d1t35a_          89 ERKAKMSELA--------DGFISMPGGFGTYEELFEVLCWAQIGIH----QKPIGLYNVNGYFEPMMKMVKYSIQEGFSN  156 (179)
T ss_dssp             HHHHHHHHHC--------SEEEECSCCHHHHHHHHHHHHTTSCSSC----CCCEEEECGGGTTHHHHHHHHHHHHTTSSC
T ss_pred             HHHHHHHHhc--------CeEEEecCccchhhHHHHHHHHHHhhcc----CCCeEeecCCccHHHHHHHHHHHHHcCCCC
Confidence            9999999987        9999999999999999999999999864    799999999999999999999999999999


Q ss_pred             hhcccccEEEeCCHHHHHHHHHhh
Q 028413          163 KDEVASLWKICDSNSEALSYLAEF  186 (209)
Q Consensus       163 ~~~~~~~i~~~~~~ee~~~~l~~~  186 (209)
                      +++ .+.+.+++||+|++++|++|
T Consensus       157 ~~~-~~~i~~~~~~~e~i~~L~~~  179 (179)
T d1t35a_         157 ESH-LKLIHSSSRPDELIEQMQNY  179 (179)
T ss_dssp             TTH-HHHEEEESSHHHHHHHHHTC
T ss_pred             hHH-hCcEEEeCCHHHHHHHHHhC
Confidence            975 48899999999999999875

>d1ydhb_ c.129.1.1 (B:) Hypothetical protein At5g11950 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: MCP/YpsA-like
superfamily: MCP/YpsA-like
family: MoCo carrier protein-like
domain: Hypothetical protein At5g11950
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=100.00  E-value=1.2e-47  Score=312.41  Aligned_cols=165  Identities=21%  Similarity=0.306  Sum_probs=147.3

Q ss_pred             CCcHHHHH-HHHHHHHHHHcCCCEEEccCCccHHHHHHHHHHhCCCcEEEEecCCC-cccccccCCCCCCCccceeeccc
Q 028413            3 PDHPHYLQ-SFELGGEIARLLDCTTWSGAGPGLMDAVTKGAMQAGKPVGGFKVGKE-AGEWTASNFHPYLPLETYLTCRF   80 (209)
Q Consensus         3 ~~~p~y~~-A~~LG~~La~~g~~~V~~GG~~GlM~ava~ga~~~gG~viGi~~~~~-~~~~~~~~~n~~l~~e~~i~~~~   80 (209)
                      +.||.|.+ |++||+.||++|+.+|||||..|+|||+|+||+++||+|+||+|... +.+    ..|++++  .++.+++
T Consensus        14 ~~~~~~~~~a~~lg~~La~~g~~lv~GGG~~GlMga~a~ga~~~gg~viGv~~~~l~~~e----~~~~~~~--~~~~~~~   87 (181)
T d1ydhb_          14 GHREVFSDAAIELGNELVKRKIDLVYGGGSVGLMGLISRRVYEGGLHVLGIIPKALMPIE----ISGETVG--DVRVVAD   87 (181)
T ss_dssp             CSSTHHHHHHHHHHHHHHHTTCEEEECCCSSHHHHHHHHHHHHTTCCEEEEEEGGGHHHH----CCSCCCS--EEEEESS
T ss_pred             CcCCHHHHHHHHHHHHHHHCCCeEEECCCchHHHHHHHHhHhhcCCcccccchhhhhhhh----cCCcccC--cceeecc
Confidence            45666665 99999999999998999999999999999999999999999998532 222    2477775  4567899


Q ss_pred             hHHHHHHhHhhhhhcCCCCccEEEEeCCCcccHHHHHHHHHHHHhhhhcCCCCccEEEEeCCccchHHHHHHHhHHHcCC
Q 028413           81 FSARKHGLIDCAVRNDSCDRTAVVALPGGVGTLDEMFEILALIQLERIGSELPVPFLVMNYDSFYKKLLDFLGDCEDWGT  160 (209)
Q Consensus        81 ~~~Rk~~m~~~~~~~~~~~sDa~I~lPGG~GTLeEl~e~~t~~ql~~~~~~~~kPiilln~~g~w~~l~~~l~~~~~~gf  160 (209)
                      |++||..|++.|        ||||+||||+|||+|+|++|+|.|++.+    +||++++|.+|||+++++++++++++||
T Consensus        88 ~~~Rk~~m~~~s--------dafIvlPGG~GTLdEl~e~l~l~ql~~~----~kpiiiln~~gfw~~l~~~l~~~~~~g~  155 (181)
T d1ydhb_          88 MHERKAAMAQEA--------EAFIALPGGYGTMEELLEMITWSQLGIH----KKTVGLLNVDGYYNNLLALFDTGVEEGF  155 (181)
T ss_dssp             HHHHHHHHHHHC--------SEEEECSCSHHHHHHHHHHHHHHHHTSC----CCEEEEECGGGTTHHHHHHHHHHHHHTS
T ss_pred             HHHHHHHHHHhC--------eeEEEeCCccchHHHHHHHHHHHHhccc----CCCeEEEecCccHHHHHHHHHHHHHCCC
Confidence            999999999997        9999999999999999999999999864    7999999999999999999999999999


Q ss_pred             CChhcccccEEEeCCHHHHHHHHHhh
Q 028413          161 VAKDEVASLWKICDSNSEALSYLAEF  186 (209)
Q Consensus       161 i~~~~~~~~i~~~~~~ee~~~~l~~~  186 (209)
                      +++++ .+++.+++||+|++++|++|
T Consensus       156 i~~~~-~~~~~~~d~~ee~~~~l~~~  180 (181)
T d1ydhb_         156 IKPGA-RNIVVSAPTAKELMEKMEEY  180 (181)
T ss_dssp             SCHHH-HTTEEEESSHHHHHHHHHHC
T ss_pred             CCHHH-cCeEEEeCCHHHHHHHHHhh
Confidence            99975 48899999999999999987

>d1weka_ c.129.1.1 (A:) Hypothetical protein TT1465 (TTHA1644) {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: MCP/YpsA-like
superfamily: MCP/YpsA-like
family: MoCo carrier protein-like
domain: Hypothetical protein TT1465 (TTHA1644)
species: Thermus thermophilus [TaxId: 274]

Probab=100.00  E-value=2.7e-46  Score=310.48  Aligned_cols=164  Identities=30%  Similarity=0.540  Sum_probs=144.9

Q ss_pred             CCCcHHHHHHHHHHHHHHHcCCCEEEccCCccHHHHHHHHHHhCCCcEEEEecCCCcccccccCCCCCCCccceeeccch
Q 028413            2 GPDHPHYLQSFELGGEIARLLDCTTWSGAGPGLMDAVTKGAMQAGKPVGGFKVGKEAGEWTASNFHPYLPLETYLTCRFF   81 (209)
Q Consensus         2 ~~~~p~y~~A~~LG~~La~~g~~~V~~GG~~GlM~ava~ga~~~gG~viGi~~~~~~~~~~~~~~n~~l~~e~~i~~~~~   81 (209)
                      +++++.|+.|++||+.||++|+.+||||| +|+|+|+|+||+++||+|+||+|.....    ..+|++++  ..+++++|
T Consensus        45 ~~~~~~y~~A~~LG~~La~~g~~lv~GGg-~GlMgava~ga~~~gG~viGi~~~~~~~----~~~~~~~~--~~i~~~~~  117 (208)
T d1weka_          45 GEGHPAYEAGYRLGRALAEAGFGVVTGGG-PGVMEAVNRGAYEAGGVSVGLNIELPHE----QKPNPYQT--HALSLRYF  117 (208)
T ss_dssp             CTTSHHHHHHHHHHHHHHHHTCEEEECSC-SHHHHHHHHHHHHTTCCEEEEEECCTTC----CCCCSCCS--EEEEESCH
T ss_pred             CCcChHHHHHHHHHHHHHhCcceEEeCCC-chHHHHHHhhhhhcCCceeccccccccc----cccccccc--eEEecccH
Confidence            46778898899999999999887777665 6999999999999999999998865432    23688886  45667999


Q ss_pred             HHHHHHhHhhhhhcCCCCccEEEEeCCCcccHHHHHHHHHHHHhhhhcCCCCccEEEEeCCccchHHHHHHHhHHHcCCC
Q 028413           82 SARKHGLIDCAVRNDSCDRTAVVALPGGVGTLDEMFEILALIQLERIGSELPVPFLVMNYDSFYKKLLDFLGDCEDWGTV  161 (209)
Q Consensus        82 ~~Rk~~m~~~~~~~~~~~sDa~I~lPGG~GTLeEl~e~~t~~ql~~~~~~~~kPiilln~~g~w~~l~~~l~~~~~~gfi  161 (209)
                      ++||..|++.|        ||||+||||+|||+|+|++|+|.|++.+   ++||||++| +|||+++++|++++.++||+
T Consensus       118 ~~Rk~~m~~~s--------DafI~lPGG~GTLdEl~e~lt~~ql~~~---~~kPIil~~-~gfw~~l~~~l~~~~~~gfi  185 (208)
T d1weka_         118 FVRKVLFVRYA--------VGFVFLPGGFGTLDELSEVLVLLQTEKV---HRFPVFLLD-RGYWEGLVRWLAFLRDQKAV  185 (208)
T ss_dssp             HHHHHHHHHTE--------EEEEECSCCHHHHHHHHHHHHHHHTTSS---CCCCEEEEC-HHHHHHHHHHHHHHHHTTSS
T ss_pred             HHHHHHHHhCC--------CceEEecCcchhHHHHHHHHHHHhcccc---CcCcccccC-CcHHHHHHHHHHHHHHCCCC
Confidence            99999999987        9999999999999999999999999865   579999998 79999999999999999999


Q ss_pred             ChhcccccEEEeCCHHHHHHHHHh
Q 028413          162 AKDEVASLWKICDSNSEALSYLAE  185 (209)
Q Consensus       162 ~~~~~~~~i~~~~~~ee~~~~l~~  185 (209)
                      +++. .+.+.+|+|++|+++.|++
T Consensus       186 ~~~~-~~~i~v~d~~ee~i~~L~s  208 (208)
T d1weka_         186 GPED-LQLFRLTDEPEEVVQALKA  208 (208)
T ss_dssp             CTTG-GGGSEEESCHHHHHHHHHC
T ss_pred             ChHH-hCcEEEeCCHHHHHHHhhC
Confidence            9975 5888999999999999863

>d1rcua_ c.129.1.1 (A:) Hypothetical protein TM1055 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: MCP/YpsA-like
superfamily: MCP/YpsA-like
family: MoCo carrier protein-like
domain: Hypothetical protein TM1055
species: Thermotoga maritima [TaxId: 2336]

Probab=100.00  E-value=1.6e-41  Score=273.50  Aligned_cols=149  Identities=23%  Similarity=0.288  Sum_probs=129.3

Q ss_pred             HHHH-HHHHHHHHHHcCCCEEEccCCccHHHHHHHHHHhCCCcEEEEecCCCcccccccCCCCCCCccceeeccchHHHH
Q 028413            7 HYLQ-SFELGGEIARLLDCTTWSGAGPGLMDAVTKGAMQAGKPVGGFKVGKEAGEWTASNFHPYLPLETYLTCRFFSARK   85 (209)
Q Consensus         7 ~y~~-A~~LG~~La~~g~~~V~~GG~~GlM~ava~ga~~~gG~viGi~~~~~~~~~~~~~~n~~l~~e~~i~~~~~~~Rk   85 (209)
                      .|.+ |++||++||++|+ +|||||++|+|+|+|+||+++||+|+||+|..+       .+|+|++. .+.+..+|++||
T Consensus        20 ~~~~~a~~lG~~la~~g~-~V~~GG~~GlM~ava~ga~~~gg~viGilP~~~-------~~n~~~~~-~i~~~~~~~~Rk   90 (170)
T d1rcua_          20 ELRDICLELGRTLAKKGY-LVFNGGRDGVMELVSQGVREAGGTVVGILPDEE-------AGNPYLSV-AVKTGLDFQMRS   90 (170)
T ss_dssp             GGHHHHHHHHHHHHHTTC-EEEECCSSHHHHHHHHHHHHTTCCEEEEESTTC-------CCCTTCSE-EEECCCCHHHHH
T ss_pred             HHHHHHHHHHHHHHHCCC-EEECCCccCHHHHHHHHHHhcCCccccccchhh-------ccCcccce-eEEeccchhhhH
Confidence            4555 9999999999965 999999999999999999999999999998543       35899862 233335899999


Q ss_pred             HHhHhhhhhcCCCCccEEEEeCCCcccHHHHHHHHHHHHhhhhcCCCCccEEEEeCCccchHHHHHHHhHHHcCCCChhc
Q 028413           86 HGLIDCAVRNDSCDRTAVVALPGGVGTLDEMFEILALIQLERIGSELPVPFLVMNYDSFYKKLLDFLGDCEDWGTVAKDE  165 (209)
Q Consensus        86 ~~m~~~~~~~~~~~sDa~I~lPGG~GTLeEl~e~~t~~ql~~~~~~~~kPiilln~~g~w~~l~~~l~~~~~~gfi~~~~  165 (209)
                      ..|++.|        |+||+||||+|||+|+|++|+|          .|||+++|.+|||++++.  +.+.+++|+++++
T Consensus        91 ~~m~~~s--------da~I~lPGG~GTl~El~~a~~l----------~KPiilln~~g~w~~~i~--~~~~~~~~i~~~~  150 (170)
T d1rcua_          91 FVLLRNA--------DVVVSIGGEIGTAIEILGAYAL----------GKPVILLRGTGGWTDRIS--QVLIDGKYLDNRR  150 (170)
T ss_dssp             HHHHTTC--------SEEEEESCCHHHHHHHHHHHHT----------TCCEEEETTSCHHHHHGG--GGCBTTTBSSTTC
T ss_pred             HHHhhcc--------cceeeeccccchHHHHHHHHHh----------CCceEEecCCCchHHHHH--HHHHHCCCCCHHH
Confidence            9999987        9999999999999999999976          479999999999999865  4578899999875


Q ss_pred             ccccEEEeCCHHHHHHHHHh
Q 028413          166 VASLWKICDSNSEALSYLAE  185 (209)
Q Consensus       166 ~~~~i~~~~~~ee~~~~l~~  185 (209)
                      . +.+.+++|++|++++|++
T Consensus       151 ~-~~i~~~~~~ee~~~~l~~  169 (170)
T d1rcua_         151 I-VEIHQAWTVEEAVQIIEQ  169 (170)
T ss_dssp             C-SCEEEESSHHHHHHHHHT
T ss_pred             c-CeEEEeCCHHHHHHHHHc
Confidence            4 778999999999999976

>d1weha_ c.129.1.1 (A:) Hypothetical protein TT1887 (TTHA0294) {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: MCP/YpsA-like
superfamily: MCP/YpsA-like
family: MoCo carrier protein-like
domain: Hypothetical protein TT1887 (TTHA0294)
species: Thermus thermophilus [TaxId: 274]

Probab=100.00  E-value=3.6e-41  Score=271.79  Aligned_cols=157  Identities=24%  Similarity=0.349  Sum_probs=128.6

Q ss_pred             CCCcHHHHHHHHHHHHHHHcCCCEEEccCCccHHHHHHHHHHhCCCcEEEEecC-CCcccccccCCCCCCCccceeeccc
Q 028413            2 GPDHPHYLQSFELGGEIARLLDCTTWSGAGPGLMDAVTKGAMQAGKPVGGFKVG-KEAGEWTASNFHPYLPLETYLTCRF   80 (209)
Q Consensus         2 ~~~~p~y~~A~~LG~~La~~g~~~V~~GG~~GlM~ava~ga~~~gG~viGi~~~-~~~~~~~~~~~n~~l~~e~~i~~~~   80 (209)
                      +++++.|++|++||++||++|+.+|+|| ++|+|+|+|+||+++||+++||+|. .-+.+   +.+|++++  ..+.+.+
T Consensus        13 ~~~~~~~~~a~~lG~~la~~g~~lv~GG-g~G~M~a~a~ga~~~gG~~iGv~~~~~l~~~---~~~n~~~~--~~i~~~~   86 (171)
T d1weha_          13 SPEDPLYARWVRYGEVLAEEGFGLACGG-YQGGMEALARGVKAKGGLVVGVTAPAFFPER---RGPNPFVD--LELPAAT   86 (171)
T ss_dssp             CTTSHHHHHHHHHHHHHHHTTEEEEECC-SSTHHHHHHHHHHHTTCCEEECCCGGGCTTS---CSSCTTCS--EECCCSS
T ss_pred             CCCCHHHHHHHHHHHHHHHCCCceeeCc-chHHHHHHHHHHHhccCceeeeeeccccchh---hccCcccc--cccccch
Confidence            4567778889999999999987766655 5799999999999999999999853 22222   23588986  5667789


Q ss_pred             hHHHHHHhHhhhhhcCCCCccEEEEeCCCcccHHHHHHHHHHHHhhhhcCCCCccEEEEeCCccchHHHHHHHhHHHcCC
Q 028413           81 FSARKHGLIDCAVRNDSCDRTAVVALPGGVGTLDEMFEILALIQLERIGSELPVPFLVMNYDSFYKKLLDFLGDCEDWGT  160 (209)
Q Consensus        81 ~~~Rk~~m~~~~~~~~~~~sDa~I~lPGG~GTLeEl~e~~t~~ql~~~~~~~~kPiilln~~g~w~~l~~~l~~~~~~gf  160 (209)
                      |++||..|++.|        ||||+||||+|||+|+|++|++.|++      .||++++|.+|||+++++      .+||
T Consensus        87 ~~~Rk~~m~~~s--------da~I~lPGG~GTLdEl~e~~~~~~l~------~~~~~~~~~~g~w~~ll~------~~g~  146 (171)
T d1weha_          87 LPQRIGRLLDLG--------AGYLALPGGVGTLAELVLAWNLLYLR------RGVGRPLAVDPYWLGLLK------AHGE  146 (171)
T ss_dssp             HHHHHHHHHHHE--------EEEEECSCCHHHHHHHHHHHHHHHTC------SSCSCCEEECGGGGGTCC------CBTT
T ss_pred             HHHHHHHHHHcc--------cceeecCCccchHHHHHHHHHHHHcC------CCCCcCeecCcccHHHHh------hCCC
Confidence            999999999997        99999999999999999999988874      234444445789999854      4689


Q ss_pred             CChhcccccEEEeCCHHHHHHHHHh
Q 028413          161 VAKDEVASLWKICDSNSEALSYLAE  185 (209)
Q Consensus       161 i~~~~~~~~i~~~~~~ee~~~~l~~  185 (209)
                      +++++. +.+.+++|++|++++|++
T Consensus       147 i~~~~~-~~~~i~~~~~e~~~~l~~  170 (171)
T d1weha_         147 IAPEDV-GLLRVVADEEDLRRFLRS  170 (171)
T ss_dssp             BCHHHH-TTSEECCSHHHHHHHHHT
T ss_pred             CCHHHc-CcEEEECCHHHHHHHHhc
Confidence            998764 788999999999999975

>d1s2da_ c.23.14.1 (A:) Purine transdeoxyribosylase {Lactobacillus helveticus [TaxId: 1587]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: N-(deoxy)ribosyltransferase-like
family: N-deoxyribosyltransferase
domain: Purine transdeoxyribosylase
species: Lactobacillus helveticus [TaxId: 1587]

Probab=90.71  E-value=0.11  Score=38.82  Aligned_cols=42  Identities=21%  Similarity=0.116  Sum_probs=30.6

Q ss_pred             HHHHHHhHhhhhhcCCCCccEEEEe-CC---CcccHHHHHHHHHHHHhhhhcCCCCccEEEEeC
Q 028413           82 SARKHGLIDCAVRNDSCDRTAVVAL-PG---GVGTLDEMFEILALIQLERIGSELPVPFLVMNY  141 (209)
Q Consensus        82 ~~Rk~~m~~~~~~~~~~~sDa~I~l-PG---G~GTLeEl~e~~t~~ql~~~~~~~~kPiilln~  141 (209)
                      ..|...+++.|        |++|++ .|   -.||..|+..++.+          .||||++..
T Consensus        72 f~~D~~~i~~s--------D~vIA~ldg~~~D~GTa~EiG~A~a~----------gKPvi~~~~  117 (167)
T d1s2da_          72 YQNDLTGISNA--------TCGVFLYDMDQLDDGSAFEIGFMRAM----------HKPVILVPF  117 (167)
T ss_dssp             HHHHHHHHHHC--------SEEEEEEESSSCCHHHHHHHHHHHHT----------TCCEEEEEE
T ss_pred             HHHHHHHHHHC--------CEEEEEeCCCCCCccHHHHHHHHHHC----------CCeEEEEec
Confidence            45555566665        999985 44   34999999877764          589999864

>d1f8ya_ c.23.14.1 (A:) Nucleoside 2-deoxyribosyltransferase {Lactobacillus leichmannii [TaxId: 28039]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: N-(deoxy)ribosyltransferase-like
family: N-deoxyribosyltransferase
domain: Nucleoside 2-deoxyribosyltransferase
species: Lactobacillus leichmannii [TaxId: 28039]

Probab=88.06  E-value=0.3  Score=36.11  Aligned_cols=32  Identities=16%  Similarity=-0.063  Sum_probs=25.5

Q ss_pred             ccEEEEeCCC----cccHHHHHHHHHHHHhhhhcCCCCccEEEEeC
Q 028413          100 RTAVVALPGG----VGTLDEMFEILALIQLERIGSELPVPFLVMNY  141 (209)
Q Consensus       100 sDa~I~lPGG----~GTLeEl~e~~t~~ql~~~~~~~~kPiilln~  141 (209)
                      ||++|++-.|    .||.-|+-.++++          .|||+++..
T Consensus        78 aD~via~ldg~~~D~Gta~EiG~A~a~----------gKpvi~~~~  113 (156)
T d1f8ya_          78 NDIMLGVYIPDEEDVGLGMELGYALSQ----------GKYVLLVIP  113 (156)
T ss_dssp             SSEEEEECCGGGCCHHHHHHHHHHHHT----------TCEEEEEEC
T ss_pred             CCEEEEEeCCCCCCCCHHHHHHHHHHc----------CCcEEEEec
Confidence            4999996555    4999999877764          589999964

>d2f62a1 c.23.14.1 (A:9-160) Nucleoside 2-deoxyribosyltransferase {Trypanosoma brucei [TaxId: 5691]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: N-(deoxy)ribosyltransferase-like
family: N-deoxyribosyltransferase
domain: Nucleoside 2-deoxyribosyltransferase
species: Trypanosoma brucei [TaxId: 5691]

Probab=87.21  E-value=0.72  Score=33.89  Aligned_cols=86  Identities=20%  Similarity=0.136  Sum_probs=49.5

Q ss_pred             hHHHHHHhHhhhhhcCCCCccEEEEeC----C---CcccHHHHHHHHHHHHhhhhcCCCCccEEEEeCCccchHHHHHHH
Q 028413           81 FSARKHGLIDCAVRNDSCDRTAVVALP----G---GVGTLDEMFEILALIQLERIGSELPVPFLVMNYDSFYKKLLDFLG  153 (209)
Q Consensus        81 ~~~Rk~~m~~~~~~~~~~~sDa~I~lP----G---G~GTLeEl~e~~t~~ql~~~~~~~~kPiilln~~g~w~~l~~~l~  153 (209)
                      ..++...+++.|        |++|+.-    |   -.||.-|+-.++.+          .|||+.+..+  ++...+...
T Consensus        49 If~~d~~~i~~~--------D~VIA~Ld~frg~~~D~GTa~EiG~A~al----------gKPVi~~~~d--~r~~~~~~~  108 (152)
T d2f62a1          49 IRQKNIQMIKDC--------DAVIADLSPFRGHEPDCGTAFEVGCAAAL----------NKMVLTFTSD--RRNMREKYG  108 (152)
T ss_dssp             HHHHHHHHHHHC--------SEEEEECCCCSSSSCCHHHHHHHHHHHHT----------TCEEEEECSC--CSCHHHHHT
T ss_pred             HHHHHHHHHHhC--------CEEEEEccccCCCCCCchHHHHHHHHHHC----------CCeEEEEecC--chHHHHhcc
Confidence            455666677765        9999962    4   58999999877765          5899999643  333333211


Q ss_pred             hH-HHcCCCC-----hhc--ccccEEEeCCHHHHHHHHHhh
Q 028413          154 DC-EDWGTVA-----KDE--VASLWKICDSNSEALSYLAEF  186 (209)
Q Consensus       154 ~~-~~~gfi~-----~~~--~~~~i~~~~~~ee~~~~l~~~  186 (209)
                      .. -.+|++-     +.+  +..-+..+.+.|++++.+..-
T Consensus       109 ~~~d~~g~~vedfg~~~NLMl~~~~~~~~~~e~~l~~~~~~  149 (152)
T d2f62a1         109 SGVDKDNLRVEGFGLPFNLMLYDGVEVFDSFESAFKYFLAN  149 (152)
T ss_dssp             SSBCTTSCBCCCSSCSSCGGGCCSSCEESSHHHHHHHHHHH
T ss_pred             cccCCCCceeecCCCccchhhccchheecCHHHHHHHHHhh
Confidence            11 0111100     000  111234568899988887653

>d1kyha_ c.72.1.4 (A:) Hypothetical protein YxkO {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: Ribokinase-like
superfamily: Ribokinase-like
family: YjeF C-terminal domain-like
domain: Hypothetical protein YxkO
species: Bacillus subtilis [TaxId: 1423]

Probab=85.22  E-value=0.5  Score=37.97  Aligned_cols=103  Identities=16%  Similarity=0.092  Sum_probs=52.4

Q ss_pred             cCCCEEEcc--CCccHHHHHHHHHHhCC-CcEEEEecCCCcccccccCCCCCCCccceeeccchHHHHHHhHhhhhhcCC
Q 028413           21 LLDCTTWSG--AGPGLMDAVTKGAMQAG-KPVGGFKVGKEAGEWTASNFHPYLPLETYLTCRFFSARKHGLIDCAVRNDS   97 (209)
Q Consensus        21 ~g~~~V~~G--G~~GlM~ava~ga~~~g-G~viGi~~~~~~~~~~~~~~n~~l~~e~~i~~~~~~~Rk~~m~~~~~~~~~   97 (209)
                      +|..+|++|  +++|.---++++|...| |.|.-..|......     .....+ |..+. .+...... ...     ..
T Consensus        26 ~G~vliIgGS~~~~GA~~laa~aAlr~GaG~v~~~~~~~~~~~-----~~~~~p-e~~~~-~~~~~~~~-~~~-----~~   92 (275)
T d1kyha_          26 YGTALLLAGSDDMPGAALLAGLGAMRSGLGKLVIGTSENVIPL-----IVPVLP-EATYW-RDGWKKAA-DAQ-----LE   92 (275)
T ss_dssp             CCEEEEECCBTTBCHHHHHHHHHHHHTTCSEEEEECCTTTHHH-----HTTTCT-TCEEC-TTHHHHTT-TSC-----CC
T ss_pred             CCeEEEEeCCCCCCcHHHHHHHHHHHHCCCEEEEEecHHHHHH-----HHHhhh-hhhcc-ccchhhhh-HHH-----hh
Confidence            456677777  45777777789999988 45554444321110     122232 22221 22111111 000     01


Q ss_pred             CCccEEEEeCCCcccHHHHHHHHHHHHhhhhcCCCCccEEEEeCCcc
Q 028413           98 CDRTAVVALPGGVGTLDEMFEILALIQLERIGSELPVPFLVMNYDSF  144 (209)
Q Consensus        98 ~~sDa~I~lPGG~GTLeEl~e~~t~~ql~~~~~~~~kPiilln~~g~  144 (209)
                      ...|++++=| |+|+-++..+++..  +..    .++|+| ++.++.
T Consensus        93 ~~~~~~~iGp-Glg~~~~~~~~~~~--l~~----~~~p~V-lDAdal  131 (275)
T d1kyha_          93 ETYRAIAIGP-GLPQTESVQQAVDH--VLT----ADCPVI-LDAGAL  131 (275)
T ss_dssp             SCCSEEEECT-TCCSSHHHHHHHHH--HTT----SSSCEE-ECGGGC
T ss_pred             hccceEEEec-cccchHHHHHHHHH--Hhh----ccCcee-ehhhhh
Confidence            1237776655 58998888877654  221    368875 554443