Citrus Sinensis ID: 028414
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
|---|
Close Homologs for Annotation Transfer
Close Homologs in the Non-Redundant Database Detected by BLAST 
Original result of BLAST against Nonredundant Database
GI ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Q cover ![]() |
H cover ![]() |
Identity ![]() |
E-value ![]() |
| Query | 209 | ||||||
| 297734310 | 307 | unnamed protein product [Vitis vinifera] | 1.0 | 0.680 | 0.847 | 1e-101 | |
| 359491022 | 291 | PREDICTED: uncharacterized protein LOC10 | 1.0 | 0.718 | 0.847 | 1e-101 | |
| 224133212 | 292 | predicted protein [Populus trichocarpa] | 0.966 | 0.691 | 0.837 | 3e-96 | |
| 449439449 | 300 | PREDICTED: uncharacterized protein LOC10 | 1.0 | 0.696 | 0.804 | 8e-93 | |
| 363807524 | 290 | uncharacterized protein LOC100780288 [Gl | 0.985 | 0.710 | 0.792 | 1e-92 | |
| 356524674 | 291 | PREDICTED: uncharacterized protein LOC10 | 0.971 | 0.697 | 0.799 | 3e-92 | |
| 449510955 | 275 | PREDICTED: uncharacterized protein LOC10 | 0.976 | 0.741 | 0.819 | 3e-92 | |
| 255645461 | 291 | unknown [Glycine max] | 0.985 | 0.707 | 0.787 | 5e-92 | |
| 255583469 | 310 | conserved hypothetical protein [Ricinus | 1.0 | 0.674 | 0.809 | 1e-90 | |
| 388493884 | 291 | unknown [Lotus japonicus] | 0.985 | 0.707 | 0.772 | 9e-90 |
| >gi|297734310|emb|CBI15557.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 373 bits (958), Expect = e-101, Method: Compositional matrix adjust.
Identities = 178/210 (84%), Positives = 190/210 (90%), Gaps = 1/210 (0%)
Query: 1 MARILNWGEDRRFDEMRSNLGKLAIFWIFQAVWVWTVSLPVTVVNASDRDPSVQAVDVIG 60
+ RIL WGEDRRFDEMRSNLGKLA+FW FQAVWVWTVSLPVT+VNAS RDPS+QA D+IG
Sbjct: 82 LMRILQWGEDRRFDEMRSNLGKLAVFWTFQAVWVWTVSLPVTIVNASGRDPSLQAADIIG 141
Query: 61 WIMWSVGVSIEAIADQQKLSFKNSPENRGKWCNVGFWKYSRHPNYFGEIFLWWGIFVAST 120
WIMWSVG++IEA ADQQKLSFKNSPENRGKWCNVG WKY+RHPNYFGEI LWWGIFVAST
Sbjct: 142 WIMWSVGITIEASADQQKLSFKNSPENRGKWCNVGVWKYTRHPNYFGEILLWWGIFVAST 201
Query: 121 PVLDGAEWLVILGPIFLTLLLLFISGIPLLEESADKKFGNMPAYRLYKKTTSPLIPLPPV 180
PVL+GAEWLVILGPIFLTLLLLF+SGIPLLEESADKKFGN+ YRLYK TTSPL+PLPPV
Sbjct: 202 PVLEGAEWLVILGPIFLTLLLLFVSGIPLLEESADKKFGNVAGYRLYKSTTSPLVPLPPV 261
Query: 181 VYGNLPWWLK-TILFELPLYSRNFPQEGPN 209
VYGNLP W K T L E P YSRN PQEG N
Sbjct: 262 VYGNLPSWFKTTFLLEFPFYSRNLPQEGQN 291
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|359491022|ref|XP_003634205.1| PREDICTED: uncharacterized protein LOC100853969 [Vitis vinifera] | Back alignment and taxonomy information |
|---|
| >gi|224133212|ref|XP_002321511.1| predicted protein [Populus trichocarpa] gi|222868507|gb|EEF05638.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
| >gi|449439449|ref|XP_004137498.1| PREDICTED: uncharacterized protein LOC101219154 [Cucumis sativus] | Back alignment and taxonomy information |
|---|
| >gi|363807524|ref|NP_001241888.1| uncharacterized protein LOC100780288 [Glycine max] gi|255636515|gb|ACU18596.1| unknown [Glycine max] | Back alignment and taxonomy information |
|---|
| >gi|356524674|ref|XP_003530953.1| PREDICTED: uncharacterized protein LOC100782499 [Glycine max] | Back alignment and taxonomy information |
|---|
| >gi|449510955|ref|XP_004163821.1| PREDICTED: uncharacterized protein LOC101228363 [Cucumis sativus] | Back alignment and taxonomy information |
|---|
| >gi|255645461|gb|ACU23226.1| unknown [Glycine max] | Back alignment and taxonomy information |
|---|
| >gi|255583469|ref|XP_002532493.1| conserved hypothetical protein [Ricinus communis] gi|223527792|gb|EEF29892.1| conserved hypothetical protein [Ricinus communis] | Back alignment and taxonomy information |
|---|
| >gi|388493884|gb|AFK35008.1| unknown [Lotus japonicus] | Back alignment and taxonomy information |
|---|
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST 
Original result of BLAST against Gene Ontology (AMIGO)
ID ![]() |
Alignment graph ![]() |
Length ![]() |
Definition ![]() |
Q cover ![]() |
H cover ![]() |
Identity ![]() |
E-value ![]() |
| Query | 209 | ||||||
| TAIR|locus:2027774 | 302 | AT1G73650 [Arabidopsis thalian | 0.990 | 0.685 | 0.653 | 1.1e-71 | |
| TAIR|locus:2194090 | 305 | AT1G18180 [Arabidopsis thalian | 0.985 | 0.675 | 0.647 | 7.7e-71 | |
| FB|FBgn0035914 | 316 | CG6282 [Drosophila melanogaste | 0.942 | 0.623 | 0.443 | 7.3e-43 | |
| ZFIN|ZDB-GENE-030131-3630 | 288 | si:ch211-210c8.6 "si:ch211-210 | 0.851 | 0.618 | 0.398 | 3.1e-35 | |
| UNIPROTKB|G4N6G0 | 335 | MGG_03731 "Uncharacterized pro | 0.588 | 0.367 | 0.450 | 7.6e-25 | |
| DICTYBASE|DDB_G0279829 | 267 | DDB_G0279829 "DUF1295 family p | 0.822 | 0.644 | 0.353 | 2.6e-24 | |
| UNIPROTKB|Q74AM9 | 256 | GSU2323 "Uncharacterized prote | 0.789 | 0.644 | 0.337 | 4.3e-22 | |
| TIGR_CMR|GSU_2323 | 256 | GSU_2323 "membrane protein, pu | 0.789 | 0.644 | 0.337 | 4.3e-22 | |
| UNIPROTKB|G4NC19 | 328 | MGG_00459 "Uncharacterized pro | 0.578 | 0.368 | 0.369 | 5.2e-21 | |
| UNIPROTKB|Q722V9 | 257 | LMOf2365_0620 "Putative membra | 0.564 | 0.459 | 0.364 | 5.3e-17 |
| TAIR|locus:2027774 AT1G73650 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 725 (260.3 bits), Expect = 1.1e-71, P = 1.1e-71
Identities = 136/208 (65%), Positives = 150/208 (72%)
Query: 1 MARILNWGEDRRFDEMRSNLGKLAIFWIFQAVWVWTVSLPVTVVNASDRDPSVQAVDVIG 60
+ RIL WGEDRRFDE R N+ +L IFW QAVWVWTVSLP+T+VNASD S++ DVIG
Sbjct: 82 LMRILQWGEDRRFDEQRGNIVRLIIFWTLQAVWVWTVSLPLTLVNASDGGGSLKPADVIG 141
Query: 61 WIMWSVGVSIEAIADQQKLSFKNSPENRGKWCNVGFWKYSRHPNYFGEIFLWWGIFVAST 120
W MW G IEA ADQQKLSFKNSPENRGKWC+VG WKYSRHPNYFGE+ LWWGIFVA++
Sbjct: 142 WTMWVFGFLIEAAADQQKLSFKNSPENRGKWCDVGVWKYSRHPNYFGEMLLWWGIFVAAS 201
Query: 121 PVLDGAEWXXXXXXXXXXXXXXXXXXXXXXEESADKKFGNMPAYRLYKKTTSPLIPLPPV 180
PVL+GAE+ E SADKK GN AYR YKKTTSPLI P
Sbjct: 202 PVLEGAEYLVIFGPLFLTLLLLFVSGIPLLEASADKKHGNSGAYRSYKKTTSPLILFPRG 261
Query: 181 VYGNLPWWLKTI-LFELPLYSRNFPQEG 207
VYGNLP W KT+ LFE P YSRN PQEG
Sbjct: 262 VYGNLPGWFKTVFLFEFPFYSRNLPQEG 289
|
|
| TAIR|locus:2194090 AT1G18180 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
| FB|FBgn0035914 CG6282 [Drosophila melanogaster (taxid:7227)] | Back alignment and assigned GO terms |
|---|
| ZFIN|ZDB-GENE-030131-3630 si:ch211-210c8.6 "si:ch211-210c8.6" [Danio rerio (taxid:7955)] | Back alignment and assigned GO terms |
|---|
| UNIPROTKB|G4N6G0 MGG_03731 "Uncharacterized protein" [Magnaporthe oryzae 70-15 (taxid:242507)] | Back alignment and assigned GO terms |
|---|
| DICTYBASE|DDB_G0279829 DDB_G0279829 "DUF1295 family protein" [Dictyostelium discoideum (taxid:44689)] | Back alignment and assigned GO terms |
|---|
| UNIPROTKB|Q74AM9 GSU2323 "Uncharacterized protein" [Geobacter sulfurreducens PCA (taxid:243231)] | Back alignment and assigned GO terms |
|---|
| TIGR_CMR|GSU_2323 GSU_2323 "membrane protein, putative" [Geobacter sulfurreducens PCA (taxid:243231)] | Back alignment and assigned GO terms |
|---|
| UNIPROTKB|G4NC19 MGG_00459 "Uncharacterized protein" [Magnaporthe oryzae 70-15 (taxid:242507)] | Back alignment and assigned GO terms |
|---|
| UNIPROTKB|Q722V9 LMOf2365_0620 "Putative membrane protein" [Listeria monocytogenes serotype 4b str. F2365 (taxid:265669)] | Back alignment and assigned GO terms |
|---|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Ezypred Server 
Original result from Ezypred Server
Fail to connect to Ezypred Server
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING 
Original result from the STRING server
| GSVIVG00017810001 | SubName- Full=Chromosome chr17 scaffold_16, whole genome shotgun sequence; (292 aa) | ||||||||||
(Vitis vinifera) | |||||||||||
| GSVIVG00032227001 | • | • | 0.827 | ||||||||
| GSVIVG00020325001 | • | • | 0.720 | ||||||||
| GSVIVG00020324001 | • | • | 0.675 | ||||||||
| GSVIVG00028313001 | • | • | 0.561 | ||||||||
| GSVIVG00000320001 | • | 0.559 | |||||||||
| TIL | • | 0.472 | |||||||||
| GSVIVG00020327001 | • | 0.440 |
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST 
Original result of RPS-BLAST against CDD database part I
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() |
| Query | 209 | |||
| pfam06966 | 235 | pfam06966, DUF1295, Protein of unknown function (D | 7e-75 | |
| COG3752 | 272 | COG3752, COG3752, Steroid 5-alpha reductase family | 9e-34 | |
| COG2020 | 187 | COG2020, STE14, Putative protein-S-isoprenylcystei | 0.004 |
| >gnl|CDD|219244 pfam06966, DUF1295, Protein of unknown function (DUF1295) | Back alignment and domain information |
|---|
Score = 225 bits (575), Expect = 7e-75
Identities = 91/175 (52%), Positives = 120/175 (68%), Gaps = 6/175 (3%)
Query: 3 RILNWGEDRRFDEMRSNLGK------LAIFWIFQAVWVWTVSLPVTVVNASDRDPSVQAV 56
R WGED R+ ++R N GK L IF+I QAV ++ VSLPV + NAS +P++ A
Sbjct: 61 RTWGWGEDYRYVDLRKNWGKWPYLLSLLIFFILQAVLLYIVSLPVYLANASGPNPALGAW 120
Query: 57 DVIGWIMWSVGVSIEAIADQQKLSFKNSPENRGKWCNVGFWKYSRHPNYFGEIFLWWGIF 116
D+IG +W VG+ EA+ADQQ +FK P N+GK C+ G W+YSRHPNYFGE +WWGIF
Sbjct: 121 DIIGIAIWLVGIGFEALADQQLWAFKGDPANKGKVCDTGLWRYSRHPNYFGEALIWWGIF 180
Query: 117 VASTPVLDGAEWLVILGPIFLTLLLLFISGIPLLEESADKKFGNMPAYRLYKKTT 171
+ + VL G EW I GP+ +TLLL+F+SGIPLLE S KK+G+ YR Y++ T
Sbjct: 181 LIAINVLSGLEWWTIAGPLLMTLLLVFVSGIPLLEASMLKKYGDREDYRAYQRRT 235
|
This family contains a number of bacterial and eukaryotic proteins of unknown function that are approximately 300 residues long. Length = 235 |
| >gnl|CDD|226275 COG3752, COG3752, Steroid 5-alpha reductase family enzyme [General function prediction only] | Back alignment and domain information |
|---|
| >gnl|CDD|224931 COG2020, STE14, Putative protein-S-isoprenylcysteine methyltransferase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Conserved Domains Detected by HHsearch 
Original result of HHsearch against CDD database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Probability ![]() |
| Query | 209 | |||
| PF06966 | 235 | DUF1295: Protein of unknown function (DUF1295); In | 100.0 | |
| COG3752 | 272 | Steroid 5-alpha reductase family enzyme [General f | 100.0 | |
| KOG4650 | 311 | consensus Predicted steroid reductase [General fun | 100.0 | |
| PF01222 | 432 | ERG4_ERG24: Ergosterol biosynthesis ERG4/ERG24 fam | 99.89 | |
| COG2020 | 187 | STE14 Putative protein-S-isoprenylcysteine methylt | 99.86 | |
| KOG1435 | 428 | consensus Sterol reductase/lamin B receptor [Lipid | 99.84 | |
| PF04191 | 106 | PEMT: Phospholipid methyltransferase ; InterPro: I | 99.7 | |
| KOG2628 | 201 | consensus Farnesyl cysteine-carboxyl methyltransfe | 99.68 | |
| PF04140 | 94 | ICMT: Isoprenylcysteine carboxyl methyltransferase | 99.52 | |
| KOG1638 | 257 | consensus Steroid reductase [Lipid transport and m | 99.48 | |
| PLN02392 | 260 | probable steroid reductase DET2 | 99.47 | |
| PF02544 | 150 | Steroid_dh: 3-oxo-5-alpha-steroid 4-dehydrogenase | 99.4 | |
| PLN02560 | 308 | enoyl-CoA reductase | 99.28 | |
| PLN03164 | 323 | 3-oxo-5-alpha-steroid 4-dehydrogenase, C-terminal | 99.18 | |
| COG1755 | 172 | Uncharacterized protein conserved in bacteria [Fun | 99.16 | |
| KOG1640 | 304 | consensus Predicted steroid reductase [Lipid trans | 98.09 | |
| KOG1639 | 297 | consensus Steroid reductase required for elongatio | 97.87 | |
| PF07298 | 191 | NnrU: NnrU protein; InterPro: IPR009915 This famil | 97.59 | |
| PLN02797 | 164 | phosphatidyl-N-dimethylethanolamine N-methyltransf | 93.4 | |
| KOG4142 | 208 | consensus Phospholipid methyltransferase [Lipid tr | 90.37 | |
| COG4094 | 219 | Predicted membrane protein [Function unknown] | 88.5 |
| >PF06966 DUF1295: Protein of unknown function (DUF1295); InterPro: IPR010721 This family contains a number of bacterial and eukaryotic proteins of unknown function that are approximately 300 residues long | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-45 Score=313.10 Aligned_cols=170 Identities=49% Similarity=1.047 Sum_probs=155.0
Q ss_pred ccccCcCCCccHHHHHHhhh------HHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCcHHHHHHHHHHHHHHHHHHHHH
Q 028414 2 ARILNWGEDRRFDEMRSNLG------KLAIFWIFQAVWVWTVSLPVTVVNASDRDPSVQAVDVIGWIMWSVGVSIEAIAD 75 (209)
Q Consensus 2 ~r~~~~geD~R~~~~r~~~~------~~~~~~~~Q~~~~~~~~lP~~~~~~~~~~~~~~~~~~~g~~l~~~G~~l~~~ad 75 (209)
.|..++|||+||+++|++++ .++.+|++|+++++++++|+++++..+.+++++..+++|++++++|+++|++||
T Consensus 60 ~R~~~~~eD~R~~~~r~~~~~~~~~~~~~~~~~~q~~~~~~~~lP~~~~~~~~~~~~~~~~~~~g~~l~~~g~~~E~~AD 139 (235)
T PF06966_consen 60 RRNLGWGEDWRYDDLRKKWGEWFWPFSFFFIFLFQALLVWLISLPVYLANSSPPNPPLNWLDILGIALFLIGFLLETVAD 139 (235)
T ss_pred HHhCCCCCchhHHHHHHhcCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCcchHHHHHHHHHHHHHHHHHHHHH
Confidence 58888899999999999974 466789999999999999999887655556789999999999999999999999
Q ss_pred HHHHhcCCCCCCCCcccccCccccccCchhHHHHHHHHHHHHHhhcccCchhHHHHHHHHHHHHHHHHHhChHHHHHHHH
Q 028414 76 QQKLSFKNSPENRGKWCNVGFWKYSRHPNYFGEIFLWWGIFVASTPVLDGAEWLVILGPIFLTLLLLFISGIPLLEESAD 155 (209)
Q Consensus 76 ~ql~~f~~~~~~~~~lit~Gly~~~RHPnY~ge~l~w~g~~l~~~~~~~~~~~~~~~~~i~~~~ll~~~s~i~~eE~~l~ 155 (209)
.||.+||++|+|++++|++|+|++||||||+||+++|+|+++++.+...+..++++++|++++++++++++++..|+++.
T Consensus 140 ~Q~~~fk~~~~n~g~~~~~GLw~~sRHPNYfGE~l~W~g~~~~a~~~~~~~~~~~~~~pl~~~~~l~~~sgip~~E~~~~ 219 (235)
T PF06966_consen 140 QQKYRFKKDPANKGKFCTTGLWRYSRHPNYFGEILFWWGIYLAAISSGSGWLWWAIIGPLFMTLLLLFVSGIPLLEKRMA 219 (235)
T ss_pred HHHHHHhhCcccCCccccCCeeeeeeCchHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHcCchHHHHHHH
Confidence 99999999999999999999999999999999999999999998876544446788999998888889999999999999
Q ss_pred hHcCCcHHHHHHHhhC
Q 028414 156 KKFGNMPAYRLYKKTT 171 (209)
Q Consensus 156 ~kyG~~~~Y~~Y~~~t 171 (209)
+|||++|+|+||+|+|
T Consensus 220 ~kyg~~~~Y~~Y~~~t 235 (235)
T PF06966_consen 220 KKYGDRPAYQEYQRRT 235 (235)
T ss_pred HhcCCCHhHHHHHhcC
Confidence 9999999999999997
|
|
| >COG3752 Steroid 5-alpha reductase family enzyme [General function prediction only] | Back alignment and domain information |
|---|
| >KOG4650 consensus Predicted steroid reductase [General function prediction only] | Back alignment and domain information |
|---|
| >PF01222 ERG4_ERG24: Ergosterol biosynthesis ERG4/ERG24 family; InterPro: IPR001171 The two fungal enzymes, C-14 sterol reductase (gene ERG24 in budding yeast and erg3 in Neurospora crassa) and C-24(28) sterol reductase (gene ERG4 in budding yeast and sts1 in fission yeast), are involved in ergosterol biosynthesis | Back alignment and domain information |
|---|
| >COG2020 STE14 Putative protein-S-isoprenylcysteine methyltransferase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
| >KOG1435 consensus Sterol reductase/lamin B receptor [Lipid transport and metabolism; Signal transduction mechanisms] | Back alignment and domain information |
|---|
| >PF04191 PEMT: Phospholipid methyltransferase ; InterPro: IPR007318 The Saccharomyces cerevisiae (Baker's yeast) phospholipid methyltransferase (2 | Back alignment and domain information |
|---|
| >KOG2628 consensus Farnesyl cysteine-carboxyl methyltransferase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
| >PF04140 ICMT: Isoprenylcysteine carboxyl methyltransferase (ICMT) family ; InterPro: IPR007269 The isoprenylcysteine o-methyltransferase (2 | Back alignment and domain information |
|---|
| >KOG1638 consensus Steroid reductase [Lipid transport and metabolism] | Back alignment and domain information |
|---|
| >PLN02392 probable steroid reductase DET2 | Back alignment and domain information |
|---|
| >PF02544 Steroid_dh: 3-oxo-5-alpha-steroid 4-dehydrogenase ; InterPro: IPR001104 Synonym(s): Steroid 5-alpha-reductase 3-oxo-5-alpha-steroid 4-dehydrogenases, 1 | Back alignment and domain information |
|---|
| >PLN02560 enoyl-CoA reductase | Back alignment and domain information |
|---|
| >PLN03164 3-oxo-5-alpha-steroid 4-dehydrogenase, C-terminal domain containing protein; Provisional | Back alignment and domain information |
|---|
| >COG1755 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
| >KOG1640 consensus Predicted steroid reductase [Lipid transport and metabolism] | Back alignment and domain information |
|---|
| >KOG1639 consensus Steroid reductase required for elongation of the very long chain fatty acids [Lipid transport and metabolism] | Back alignment and domain information |
|---|
| >PF07298 NnrU: NnrU protein; InterPro: IPR009915 This family consists of several plant and bacterial NnrU proteins | Back alignment and domain information |
|---|
| >PLN02797 phosphatidyl-N-dimethylethanolamine N-methyltransferase | Back alignment and domain information |
|---|
| >KOG4142 consensus Phospholipid methyltransferase [Lipid transport and metabolism] | Back alignment and domain information |
|---|
| >COG4094 Predicted membrane protein [Function unknown] | Back alignment and domain information |
|---|
Homologous Structure Templates
Structure Templates Detected by BLAST 
Original result of BLAST against Protein Data Bank
No homologous structure with e-value below 0.005
Structure Templates Detected by RPS-BLAST 
Original result of RPS-BLAST against PDB70 database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() |
| Query | 209 | |||
| 4a2n_B | 194 | Isoprenylcysteine carboxyl methyltransferase; memb | 2e-06 |
| >4a2n_B Isoprenylcysteine carboxyl methyltransferase; membrane protein, RAS and RHO gtpases signallin; HET: SAH PLM CDL; 3.40A {Methanosarcina acetivorans} Length = 194 | Back alignment and structure |
|---|
Score = 45.7 bits (108), Expect = 2e-06
Identities = 28/170 (16%), Positives = 56/170 (32%), Gaps = 12/170 (7%)
Query: 10 DRRFDEMRSNLGKLAIFWIFQAVWVWTVSLPVTVVNASDRDPSVQAVDVIGWIMWSVGVS 69
++ ++R N K +F F + ++ + S ++ + I+ + +
Sbjct: 31 NKSKKKVRPNFEKSLVFLNFIGMVFLPLTAVFSSYLDSFNINLPDSIRLFALIVTFLNIG 90
Query: 70 IEAIADQQ---KLSFKNSPENRGKWCNVGFWKYSRHPNYFGEIFLWWGIFVASTPVLDGA 126
+ + S ++ K G +K RHP Y +
Sbjct: 91 LFTKIHKDLGNNWSAILEIKDGHKLVKEGIYKNIRHPMYAHLWLWVITQGIIL-----SN 145
Query: 127 EWLVILGPIFLTLLLLFISGIPLLEESADKKFGNMPAYRLYKKTTSPLIP 176
++I G + +L +P EE ++FG Y Y T L P
Sbjct: 146 WVVLIFGIVAWAILYFIR--VPKEEELLIEEFG--DEYIEYMGKTGRLFP 191
|
Structure Templates Detected by HHsearch 
Original result of HHsearch against PDB70 database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Probability ![]() |
| Query | 209 | |||
| 4a2n_B | 194 | Isoprenylcysteine carboxyl methyltransferase; memb | 99.94 |
| >4a2n_B Isoprenylcysteine carboxyl methyltransferase; membrane protein, RAS and RHO gtpases signallin; HET: SAH PLM CDL; 3.40A {Methanosarcina acetivorans} | Back alignment and structure |
|---|
Probab=99.94 E-value=5.1e-26 Score=186.90 Aligned_cols=116 Identities=19% Similarity=0.301 Sum_probs=93.0
Q ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHh-cCC--CCCCCCcccccCccccccCchhHHHHHHHHHHHHHhhcccCchhHH
Q 028414 53 VQAVDVIGWIMWSVGVSIEAIADQQKLS-FKN--SPENRGKWCNVGFWKYSRHPNYFGEIFLWWGIFVASTPVLDGAEWL 129 (209)
Q Consensus 53 ~~~~~~~g~~l~~~G~~l~~~ad~ql~~-f~~--~~~~~~~lit~Gly~~~RHPnY~ge~l~w~g~~l~~~~~~~~~~~~ 129 (209)
..+..++|++++++|++++..|+.|+++ |+. +++++++++|+|+|++||||||+|+++.|+|+++...+ ++
T Consensus 74 p~~~~~~G~~l~l~G~~l~~~a~~~Lg~~f~~~~~~~~~~~Lvt~G~y~~vRHP~Y~G~~l~~~g~~l~~~s------~~ 147 (194)
T 4a2n_B 74 PDSIRLFALIVTFLNIGLFTKIHKDLGNNWSAILEIKDGHKLVKEGIYKNIRHPMYAHLWLWVITQGIILSN------WV 147 (194)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHGGGCCSSCCEETTCCCCCSSTTTTBSSHHHHHHHHHHHHHHHHHTC------HH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccCCCCCCCCeeeecCcchhccCccHHHHHHHHHHHHHHhcc------HH
Confidence 3567899999999999999999999865 443 34567889999999999999999999999998876422 33
Q ss_pred HHH-HHHHHHHHHHHHhChHHHHHHHHhHcCCcHHHHHHHhhCCCcccCC
Q 028414 130 VIL-GPIFLTLLLLFISGIPLLEESADKKFGNMPAYRLYKKTTSPLIPLP 178 (209)
Q Consensus 130 ~~~-~~i~~~~ll~~~s~i~~eE~~l~~kyG~~~~Y~~Y~~~t~~~iP~~ 178 (209)
+++ .++.++++ +..+++.||+.+.++|| ++|++|+++||++||++
T Consensus 148 ~~~~~~~~~~~~--~~~ri~~EE~~L~~~fG--~~Y~~Y~~rv~r~iP~i 193 (194)
T 4a2n_B 148 VLIFGIVAWAIL--YFIRVPKEEELLIEEFG--DEYIEYMGKTGRLFPKV 193 (194)
T ss_dssp HHHHHHHHHHHH--HHHHHHHHHHHHHHHHT--HHHHHHHHHCBSSSCC-
T ss_pred HHHHHHHHHHHH--HHHHHHHHHHHHHHHhC--HHHHHHHHhCCeeCcee
Confidence 333 23332222 33578999999999999 99999999999999985
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Homologous Structure Domains
Structure Domains Detected by RPS-BLAST 
Original result of RPS-BLAST against SCOP70(version1.75) database
No hit with e-value below 0.005
Homologous Domains Detected by HHsearch 
Original result of HHsearch against SCOP70(version1.75) database
No hit with probability above 80.00