Citrus Sinensis ID: 028427

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------21
Protein Sequence
MELCTAIQTQSAISNHHHPFLTATTAPALARTKSALSLKQTTVSRSGYGLRSRILYYTNPLPKATSEETSSGTDQYVVDKRDGATAAEDVPAVEKNVYNESVATAVPKEESPVDGLTNELLDNLKIKFDSEDKYSLVLYGTGALLALWLTTVVVGAIDSIPLFPKLMEVVGLGYTLWFSWRYLLFKKNRDELATKIEELKQQVLGSNDD
Secondary Structure (PSIPRED)
ccccHHHHHHHcccccccccccccccHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHEEEHHHHHHHcccccHHHHHHHHHHHHHHHcccccc
Secondary Structure Prediction (SSPRO)
ccEEEcccccHHHHcccccccccccccccccccccccccccccccccHHHHHEEEEccccccccccccccccccEEEEEcccccEEcccccccccccccccHHHHcccccccHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHcccccc
Coil and Loop (DISEMBL)
melctaiqtqsaisnhhhpfltattapaLARTKSALSlkqttvsrsgyglrsrilyytnplpkatseetssgtdqyvvdkrdgataaedvpaveknvynesvatavpkeespvdgltnELLDNLkikfdsedkysLVLYGTGALLALWLTTVVVGaidsiplfpKLMEVVGLGYTLWFSWRYLLFKKNRDELATKIEELKQQVLGSNDD
Flexible Loop (DISEMBL)
MELCTAIQTqsaisnhhhpFLTATTAPALARTksalslkqttvsrsgyglrsrILYYTnplpkatseetssgtdqyVVDKRDGAtaaedvpaveknvynesvatavpkeespvdglTNELLDNLKIKFDSEDKYSLVLYGTGALLALWLTTVVVGAIDSIPLFPKLMEVVGLGYTLWFSWRYLLFKKNRDELATKIEelkqqvlgsndd
Low Complexity Region (SEG)
MELCTAIQTQSAISNHHHPFltattapalartKSALSLKQTTVSRSGYGLRSRILYYTNPLPKATSEETSSGTDQYVVDKRDGATAAEDVPAVEKNVYNESVATAVPKEESPVDGLTNELLDNLKIKFDSEDKYSLVLYgtgallalwlttvvvgaIDSIPLFPKLMEVVGLGYTLWFSWRYLLFKKNRDELATKIEELKQQVLGSNDD
Disordered region (IsUnstruct)
******************PFLTATT****************TVSRSGYGLRSRILYYTN********************************************************LTNELLDNLKIKFDSEDKYSLVLYGTGALLALWLTTVVVGAIDSIPLFPKLMEVVGLGYTLWFSWRYLLFKKNRDEL*****************
Disordered Region (DISOPRED)
*********************************************************************************************************************NELLDNLKIKFDSEDKYSLVLYGTGALLALWLTTVVVGAIDSIPLFPKLMEVVGLGYTLWFSWRYLLFKKNRDELATKIEELKQ*VLG****
Disordered Region (DISEMBL)
********TQSAISNHHHPFLTATTAPALARTKSALSLKQTTVSRSGYGLRSRILYYTNPLPK**********DQYVVDKRDGATAAEDVPAVEKNVYNESVATAVPKEESPVDGLTNELLDNLKIKFDSEDKYSLVLYGTGALLALWLTTVVVGAIDSIPLFPKLMEVVGLGYTLWFSWRYLLFKKNRDELATKIEELKQ********
Disordered Region (DISPRO)
*ELCTAIQTQSAISNHHHPFLTATTAPALARTKSALSLKQTTVSRSGYGLRSRILYYTNPLP*********GTDQYVVDKRDGATAAEDVP*******************SPVDGLTNELLDNLKIKFDSEDKYSLVLYGTGALLALWLTTVVVGAIDSIPLFPKLMEVVGLGYTLWFSWRYLLFKKNRDELATKIEELKQQVLG****
Transmembrane Helix (TMHMM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHoooooooooooHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MELCTAIQTQSAISNHHHPFLTATTAPALARTKSALSLKQTTVSRSGYGLRSRILYYTNPLPKATSEETSSGTDQYVVDKRDGATAAEDVPAVEKNVYNESVATAVPKEESPVDGLTNELLDNLKIKFDSEDKYSLVLYGTGALLALWLTTVVVGAIDSIPLFPKLMEVVGLGYTLWFSWRxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	209	2.2.26 [Sep-21-2011]
O04616	164	Uncharacterized protein A	no	no	0.478	0.609	0.553	3e-26
Q8LCA1	174	Thylakoid membrane phosph	no	no	0.368	0.442	0.376	1e-11
Q119Z5	881	Glutamate--tRNA ligase OS	yes	no	0.502	0.119	0.317	3e-10

>sp|O04616|Y4115_ARATH Uncharacterized protein At4g01150, chloroplastic OS=Arabidopsis thaliana GN=At4g01150 PE=1 SV=1

 Score =  118 bits (295), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 57/103 (55%), Positives = 82/103 (79%), Gaps = 3/103 (2%)

Query: 105 AVPKEESPVDGLTNELLDNLKIKFDS-EDKYSLVLYGTGALLALWLTTVVVGAIDSIPLF 163
           A  +E S +D  TNEL+ +LK K+D  E+K ++++YG GA++A+WL+++VVGAI+S+PL 
Sbjct: 63  ASSEETSSID--TNELITDLKEKWDGLENKSTVLIYGGGAIVAVWLSSIVVGAINSVPLL 120

Query: 164 PKLMEVVGLGYTLWFSWRYLLFKKNRDELATKIEELKQQVLGS 206
           PK+ME+VGLGYT WF +RYLLFK +R ELA  IE LK+++ GS
Sbjct: 121 PKVMELVGLGYTGWFVYRYLLFKSSRKELAEDIESLKKKIAGS 163

Arabidopsis thaliana (taxid: 3702)

>sp|Q8LCA1|TMP14_ARATH Thylakoid membrane phosphoprotein 14 kDa, chloroplastic OS=Arabidopsis thaliana GN=TMP14 PE=1 SV=2

 Score = 69.7 bits (169), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 29/77 (37%), Positives = 53/77 (68%)

Query: 131 EDKYSLVLYGTGALLALWLTTVVVGAIDSIPLFPKLMEVVGLGYTLWFSWRYLLFKKNRD 190
           +DKY++       ++ALW +  ++ AID +PL P ++E+VG+GYT WF+++ L+FK +R+
Sbjct: 98  DDKYAIGSLAFAGVVALWGSAGMISAIDRLPLVPGVLELVGIGYTGWFTYKNLVFKPDRE 157

Query: 191 ELATKIEELKQQVLGSN 207
            L  K++   + +LGS+
Sbjct: 158 ALFEKVKSTYKDILGSS 174

Arabidopsis thaliana (taxid: 3702)

>sp|Q119Z5|SYE_TRIEI Glutamate--tRNA ligase OS=Trichodesmium erythraeum (strain IMS101) GN=gltX PE=3 SV=1

 Score = 65.1 bits (157), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 40/126 (31%), Positives = 68/126 (53%), Gaps = 21/126 (16%)

Query: 101 SVATAVPKEESPVDGLTNELLD----------NLKIKFDSEDKYSLV---------LYGT 141
            V T++  ++ PVD +TN+ ++           + I F+  D  + +         L+G 
Sbjct: 753 QVETSILDDQKPVDTVTNQTVEVEQPNKIKEQFINIFFNFPDYINQLYQQYQGQLKLFGW 812

Query: 142 GALLALWLT--TVVVGAIDSIPLFPKLMEVVGLGYTLWFSWRYLLFKKNRDELATKIEEL 199
            AL+ L  T   VV+ A+D IP+   + E++G+ Y +WF +RYLL + NR EL  KIE +
Sbjct: 813 LALVILTFTFMAVVIEALDGIPILSIIFELIGVIYLVWFVYRYLLKRSNRQELLDKIENI 872

Query: 200 KQQVLG 205
           K+++ G
Sbjct: 873 KREIFG 878

Catalyzes the attachment of glutamate to tRNA(Glu) in a two-step reaction: glutamate is first activated by ATP to form Glu-AMP and then transferred to the acceptor end of tRNA(Glu).

Trichodesmium erythraeum (strain IMS101) (taxid: 203124)

EC: 6

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: 7

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	209
225469778	204	PREDICTED: uncharacterized protein LOC10	0.961	0.985	0.575	8e-59
359495653	204	PREDICTED: uncharacterized protein LOC10	0.961	0.985	0.575	2e-58
388506910	199	unknown [Lotus japonicus]	0.842	0.884	0.528	9e-42
351723571	197	uncharacterized protein LOC100499731 [Gl	0.799	0.847	0.531	6e-40
351727288	200	uncharacterized protein LOC100305966 [Gl	0.727	0.76	0.550	2e-37
357485585	182	Glutamyl-tRNA synthetase [Medicago trunc	0.722	0.829	0.540	3e-36
297798056	194	threonine endopeptidase [Arabidopsis lyr	0.909	0.979	0.427	2e-35
18420175	193	uncharacterized protein [Arabidopsis tha	0.904	0.979	0.436	1e-34
4467116	153	hypothetical protein [Arabidopsis thalia	0.645	0.882	0.496	4e-31
449508380	210	PREDICTED: uncharacterized protein At4g0	0.727	0.723	0.385	6e-31

>gi|225469778|ref|XP_002274430.1| PREDICTED: uncharacterized protein LOC100261101 [Vitis vinifera] gi|297735928|emb|CBI18704.3| unnamed protein product [Vitis vinifera]

 Score =  232 bits (591), Expect = 8e-59,   Method: Compositional matrix adjust.
 Identities = 122/212 (57%), Positives = 147/212 (69%), Gaps = 11/212 (5%)

Query: 1   MELCTAIQTQSAISNHHHPFLTATTAPALARTKSALSLKQTTVSRSGYGLRSRILYYTNP 60
           MELCT      A SN HH  L    A  L     ++  KQ+ +SR+  G     LY+ NP
Sbjct: 1   MELCTT----RAFSNLHHRTLFNPLANRLRWKTISIPFKQSPISRTSPG----SLYFNNP 52

Query: 61  LPKAT-SEETSSGTDQYVVDKRDGATAAEDVPAVEKNVYNESVATAVPKEESPVDGLT-- 117
           L +A+ SE +SSG DQY+ ++RD     ED+PA E+NVYNE + T  P E+S V+  T  
Sbjct: 53  LLRASISEGSSSGADQYIGEERDSVLVMEDIPATEENVYNEVIPTEAPIEDSQVEEQTVA 112

Query: 118 NELLDNLKIKFDSEDKYSLVLYGTGALLALWLTTVVVGAIDSIPLFPKLMEVVGLGYTLW 177
            E LDNL IKFDSED YS+ LYGTGAL ALW  + +VGAIDSIP+FPKLME+VGLGYTLW
Sbjct: 113 FEFLDNLNIKFDSEDPYSIFLYGTGALTALWFASAIVGAIDSIPIFPKLMEIVGLGYTLW 172

Query: 178 FSWRYLLFKKNRDELATKIEELKQQVLGSNDD 209
           FS RYL+FK+NRDELA KIEELKQQVLGS D+
Sbjct: 173 FSARYLIFKQNRDELAAKIEELKQQVLGSEDE 204

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359495653|ref|XP_003635047.1| PREDICTED: uncharacterized protein LOC100853187 isoform 1 [Vitis vinifera] gi|359495655|ref|XP_003635048.1| PREDICTED: uncharacterized protein LOC100853187 isoform 2 [Vitis vinifera] gi|297735931|emb|CBI18707.3| unnamed protein product [Vitis vinifera]

 Score =  231 bits (588), Expect = 2e-58,   Method: Compositional matrix adjust.
 Identities = 122/212 (57%), Positives = 146/212 (68%), Gaps = 11/212 (5%)

Query: 1   MELCTAIQTQSAISNHHHPFLTATTAPALARTKSALSLKQTTVSRSGYGLRSRILYYTNP 60
           MELCT      A SN HH  L    A  L     ++  KQ+ +SR+  G     LY+ NP
Sbjct: 1   MELCTT----RAFSNLHHRTLFNPLANRLRWKTISIPFKQSPISRTSPG----SLYFNNP 52

Query: 61  LPKAT-SEETSSGTDQYVVDKRDGATAAEDVPAVEKNVYNESVATAVPKEESPVDGLT-- 117
           L +A+ SE +SSG DQY  ++RD     ED+PA E+NVYNE + T  P E+S V+  T  
Sbjct: 53  LLRASISEGSSSGADQYFGEERDSVLVMEDIPATEENVYNEVIPTEAPIEDSQVEEQTVA 112

Query: 118 NELLDNLKIKFDSEDKYSLVLYGTGALLALWLTTVVVGAIDSIPLFPKLMEVVGLGYTLW 177
            E LDNL IKFDSED YS+ LYGTGAL ALW  + +VGAIDSIP+FPKLME+VGLGYTLW
Sbjct: 113 FEFLDNLNIKFDSEDPYSIFLYGTGALTALWFASAIVGAIDSIPIFPKLMEIVGLGYTLW 172

Query: 178 FSWRYLLFKKNRDELATKIEELKQQVLGSNDD 209
           FS RYL+FK+NRDELA KIEELKQQVLGS D+
Sbjct: 173 FSARYLIFKQNRDELAAKIEELKQQVLGSEDE 204

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388506910|gb|AFK41521.1| unknown [Lotus japonicus]

 Score =  175 bits (444), Expect = 9e-42,   Method: Compositional matrix adjust.
 Identities = 93/176 (52%), Positives = 122/176 (69%)

Query: 33  KSALSLKQTTVSRSGYGLRSRILYYTNPLPKATSEETSSGTDQYVVDKRDGATAAEDVPA 92
           K  L  +Q T+      L SR ++  N L +ATS + +SG+  +  +KRDG    +DV  
Sbjct: 23  KPFLPPRQQTLITPSAALLSRSIFVRNLLTRATSSDETSGSSSFYGEKRDGVVILDDVKG 82

Query: 93  VEKNVYNESVATAVPKEESPVDGLTNELLDNLKIKFDSEDKYSLVLYGTGALLALWLTTV 152
             +N ++E+V +  PKEE PVD     LLD+L +K D  D  S+VLYG+GA++ALWL + 
Sbjct: 83  AGENGFSETVVSQDPKEEVPVDEQAFALLDDLNMKLDLNDTGSIVLYGSGAVVALWLLSA 142

Query: 153 VVGAIDSIPLFPKLMEVVGLGYTLWFSWRYLLFKKNRDELATKIEELKQQVLGSND 208
           V+GAIDSIPLFPKL+EVVGL YT+WF+ RYLLFKKNRDEL  KIEELK+QV+GS D
Sbjct: 143 VIGAIDSIPLFPKLLEVVGLSYTVWFTTRYLLFKKNRDELGAKIEELKEQVIGSED 198

Source: Lotus japonicus

Species: Lotus japonicus

Genus: Lotus

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|351723571|ref|NP_001235236.1| uncharacterized protein LOC100499731 [Glycine max] gi|255626121|gb|ACU13405.1| unknown [Glycine max]

 Score =  169 bits (428), Expect = 6e-40,   Method: Compositional matrix adjust.
 Identities = 92/173 (53%), Positives = 121/173 (69%), Gaps = 6/173 (3%)

Query: 40  QTTVSRSGYGLRSRILYYTNPLPKA-TSEETSSGTDQYVVDKRDGATAAEDVPAVEKNVY 98
           QT ++ S   L SR +   N LPKA +SEE S+G  Q+  +KRDG    E+V    KN +
Sbjct: 28  QTPLTHSAV-LLSRSICLRNLLPKAMSSEERSTGGSQFFNEKRDGVIILENVKEDNKNEF 86

Query: 99  NESVATAVPKEESPVDG--LTNELLDNLKIKFDSEDKYSLVLYGTGALLALWLTTVVVGA 156
           +++V     +EE   DG  L+ +L+D  K+ FD++D  S+VLYG GAL+ALWLT+ V+GA
Sbjct: 87  DKTVIEDTKEEELSDDGQGLSFDLMD--KLNFDTDDTGSIVLYGGGALVALWLTSAVIGA 144

Query: 157 IDSIPLFPKLMEVVGLGYTLWFSWRYLLFKKNRDELATKIEELKQQVLGSNDD 209
           IDSIPL PKL+EVVGL YT+WF+ RYLLFK+NRDEL  KIEELK Q+ GS D+
Sbjct: 145 IDSIPLIPKLLEVVGLAYTVWFTSRYLLFKQNRDELGAKIEELKGQIFGSEDN 197

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|351727288|ref|NP_001235620.1| uncharacterized protein LOC100305966 [Glycine max] gi|255627137|gb|ACU13913.1| unknown [Glycine max]

 Score =  160 bits (406), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 92/167 (55%), Positives = 114/167 (68%), Gaps = 15/167 (8%)

Query: 52  SRILYYTNPLPKATS--EETSSGTDQYVVDKRDGATAAEDVPAVEKNVYNESVATAVPKE 109
           SR +   N  PKATS  EE SSG  Q+  +KRDG    EDV   E N  NE   T +  E
Sbjct: 40  SRSVCLRNLSPKATSSEEERSSGGSQFFNEKRDGVIILEDVK--EDNNKNEFDKTVI--E 95

Query: 110 ESPVD-------GLTNELLDNLKIKFDSEDKYSLVLYGTGALLALWLTTVVVGAIDSIPL 162
           ++  D       GL+ +LLD  K+ FD++D  S+V+YG GAL+ALWLT+ V+GAIDSIPL
Sbjct: 96  DTKQDLFDDDGQGLSFDLLD--KLNFDTDDTGSIVVYGGGALVALWLTSAVIGAIDSIPL 153

Query: 163 FPKLMEVVGLGYTLWFSWRYLLFKKNRDELATKIEELKQQVLGSNDD 209
           FPKL+EVVGL YT+WF+ RYLLFK+NRDEL  KIEELK Q+ GS D+
Sbjct: 154 FPKLLEVVGLAYTVWFTSRYLLFKQNRDELGAKIEELKGQIFGSEDN 200

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357485585|ref|XP_003613080.1| Glutamyl-tRNA synthetase [Medicago truncatula] gi|355514415|gb|AES96038.1| Glutamyl-tRNA synthetase [Medicago truncatula] gi|388495348|gb|AFK35740.1| unknown [Medicago truncatula]

 Score =  157 bits (396), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 86/159 (54%), Positives = 108/159 (67%), Gaps = 8/159 (5%)

Query: 48  YGLRSRILYYTNPLPKATSEETSSGTDQYVVDKRDGATAAEDVPAVEKNVYNESVATAVP 107
           + L SR  +  N +    SEE  SG  +   +KRDG    E     +KN YNE+V    P
Sbjct: 30  HALLSRSAFLRN-VRATASEENPSGAGKLFNEKRDGVITLE----ADKNGYNETVENEDP 84

Query: 108 KEESP-VDGLTNELLDNLKIKFDSEDKYSLVLYGTGALLALWLTTVVVGAIDSIPLFPKL 166
           KE  P  +GL  ELLD  K+ FD  D  SL +YG GA++ALWLT+ +VGA+DSIP+ PKL
Sbjct: 85  KEVLPDGEGLPLELLD--KLNFDINDTTSLAVYGGGAIVALWLTSAIVGAVDSIPVIPKL 142

Query: 167 MEVVGLGYTLWFSWRYLLFKKNRDELATKIEELKQQVLG 205
            EVVGLGY+LWF++RYLLFK+NR+ELA KIEELK+QVLG
Sbjct: 143 FEVVGLGYSLWFTYRYLLFKRNREELANKIEELKEQVLG 181

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297798056|ref|XP_002866912.1| threonine endopeptidase [Arabidopsis lyrata subsp. lyrata] gi|297312748|gb|EFH43171.1| threonine endopeptidase [Arabidopsis lyrata subsp. lyrata]

 Score =  154 bits (390), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 91/213 (42%), Positives = 131/213 (61%), Gaps = 23/213 (10%)

Query: 1   MELCT---AIQTQSAISNHHHPFLTATTAPALARTKSALSLKQTTVSRSGYGLRSRILYY 57
           MELCT    + T    SN+ H +L   +   +    S L L +   S     L+SR L  
Sbjct: 1   MELCTRSTTVITHLPWSNNGHGYLAGKSVHRI----SLLPLHRKVAS---LVLQSRTLRC 53

Query: 58  TNPLPKAT-SEETSSGTDQYVVDKRDGATAAEDVPAVEKNVYNESVATAVPKEESPVDGL 116
           +   P  T SEETS+G +++ ++ RDG      V AVE+   N   + A   +   ++ L
Sbjct: 54  SRKFPGETVSEETSTGVNEFGLEDRDGV-----VVAVEEKTSNSEASQAEDDQTQALEFL 108

Query: 117 TNELLDNLKIKFDSEDKYSLVLYGTGALLALWLTTVVVGAIDSIPLFPKLMEVVGLGYTL 176
            +       IK DS+  YS++LYG+GA++AL+LT+ +V ++++IPLFPKLMEVVGLGYTL
Sbjct: 109 ND-------IKLDSDKTYSILLYGSGAIVALYLTSAIVSSLEAIPLFPKLMEVVGLGYTL 161

Query: 177 WFSWRYLLFKKNRDELATKIEELKQQVLGSNDD 209
           WFS RYLLFK+NR+EL TK+ E+K+QVLGS+ +
Sbjct: 162 WFSTRYLLFKRNREELKTKVSEIKKQVLGSDSE 194

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|18420175|ref|NP_568035.1| uncharacterized protein [Arabidopsis thaliana] gi|21554198|gb|AAM63277.1| unknown [Arabidopsis thaliana] gi|107738205|gb|ABF83661.1| At4g38100 [Arabidopsis thaliana] gi|332661478|gb|AEE86878.1| uncharacterized protein [Arabidopsis thaliana]

 Score =  152 bits (383), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 93/213 (43%), Positives = 133/213 (62%), Gaps = 24/213 (11%)

Query: 1   MELCT---AIQTQSAISNHHHPFLTATTAPALARTKSALSLKQTTVSRSGYGLRSRILYY 57
           MELCT    I T    S + H +L   +   ++     L L++   S     L+SR L  
Sbjct: 1   MELCTRSTTIITHLPASFNGHGYLAGKSVDRIS-----LPLQRNVAS---LVLQSRTLRC 52

Query: 58  TNPLPKAT-SEETSSGTDQYVVDKRDGATAAEDVPAVEKNVYNESVATAVPKEESPVDGL 116
           +   P  T +EETS+G +++ V+ RDG   A    A EKN  +E    A   E+     L
Sbjct: 53  SRKFPGETVTEETSTGVNEFGVEDRDGVVVA----AEEKNSNSE----APQAEDEETQAL 104

Query: 117 TNELLDNLKIKFDSEDKYSLVLYGTGALLALWLTTVVVGAIDSIPLFPKLMEVVGLGYTL 176
             E L++  IK DS+  YS++LYG+GA++AL+LT+ +V ++++IPLFPKLMEVVGLGYTL
Sbjct: 105 --EFLND--IKLDSDKTYSILLYGSGAIVALYLTSAIVSSLEAIPLFPKLMEVVGLGYTL 160

Query: 177 WFSWRYLLFKKNRDELATKIEELKQQVLGSNDD 209
           WF+ RYLLFK+NR+EL TK+ E+K+QVLGS+ +
Sbjct: 161 WFTTRYLLFKRNREELKTKVSEIKKQVLGSDSE 193

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|4467116|emb|CAB37550.1| hypothetical protein [Arabidopsis thaliana] gi|7270793|emb|CAB80475.1| hypothetical protein [Arabidopsis thaliana]

 Score =  140 bits (352), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 73/147 (49%), Positives = 104/147 (70%), Gaps = 12/147 (8%)

Query: 63  KATSEETSSGTDQYVVDKRDGATAAEDVPAVEKNVYNESVATAVPKEESPVDGLTNELLD 122
           +  +EETS+G +++ V+ RDG   A    A EKN  +E  A     EE+      N+   
Sbjct: 19  ETVTEETSTGVNEFGVEDRDGVVVA----AEEKNSNSE--APQAEDEETQALEFLND--- 69

Query: 123 NLKIKFDSEDKYSLVLYGTGALLALWLTTVVVGAIDSIPLFPKLMEVVGLGYTLWFSWRY 182
              IK DS+  YS++LYG+GA++AL+LT+ +V ++++IPLFPKLMEVVGLGYTLWF+ RY
Sbjct: 70  ---IKLDSDKTYSILLYGSGAIVALYLTSAIVSSLEAIPLFPKLMEVVGLGYTLWFTTRY 126

Query: 183 LLFKKNRDELATKIEELKQQVLGSNDD 209
           LLFK+NR+EL TK+ E+K+QVLGS+ +
Sbjct: 127 LLFKRNREELKTKVSEIKKQVLGSDSE 153

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449508380|ref|XP_004163298.1| PREDICTED: uncharacterized protein At4g01150, chloroplastic-like [Cucumis sativus]

 Score =  139 bits (351), Expect = 6e-31,   Method: Compositional matrix adjust.
 Identities = 74/192 (38%), Positives = 107/192 (55%), Gaps = 40/192 (20%)

Query: 56  YYTNPLPKATSEETSSGTDQYVVDKRDGATAAEDVPAVEKNVYNES----------VATA 105
           ++   LP+A + + S+G+  +  ++RD  T  ED P+       +S           AT 
Sbjct: 19  HFAVSLPRAAASDESNGSSSFFTEQRDSVTVLEDSPSASSLTLEDSPPEEIPSVVLAATE 78

Query: 106 VPKEE-----------------------------SPVDGLTNELLDNLK-IKFDSEDKYS 135
           VPK+E                              P++G   +  + L  +K +S D YS
Sbjct: 79  VPKQEPVEDVPVITLDDSSSAGKVEMVTSEEPKEQPLEGAQEQAFEFLNDLKLESVDTYS 138

Query: 136 LVLYGTGALLALWLTTVVVGAIDSIPLFPKLMEVVGLGYTLWFSWRYLLFKKNRDELATK 195
           L LYG GA   +WL + +VGA+DSIPL PKL+EVVGLGY++WF+ RYLLFK++RDELA +
Sbjct: 139 LALYGAGAFFGIWLVSAIVGAVDSIPLVPKLLEVVGLGYSVWFTARYLLFKESRDELAAR 198

Query: 196 IEELKQQVLGSN 207
           I+ELK+QVLGS+
Sbjct: 199 IDELKEQVLGSD 210

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	209
TAIR|locus:2121065	193	AT4G38100 [Arabidopsis thalian	0.918	0.994	0.385	2.4e-28
TAIR|locus:2125018	164	AT4G01150 "AT4G01150" [Arabido	0.502	0.640	0.449	5.8e-18
TAIR|locus:2044335	174	PSI-P "photosystem I P subunit	0.550	0.660	0.260	1.8e-09
TAIR|locus:2037435	156	AT1G52220 "AT1G52220" [Arabido	0.502	0.673	0.261	2.9e-07

TAIR|locus:2121065 AT4G38100 [Arabidopsis thaliana (taxid:3702)]

 Score = 316 (116.3 bits), Expect = 2.4e-28, P = 2.4e-28
 Identities = 81/210 (38%), Positives = 118/210 (56%)

Query:     1 MELCTAIQTQSAISNHHHPFXXXXXXXXXXXXKSALSLKQTTVSRSGYGLRSRILYYTNP 60
             MELCT  ++ + I++    F            + +L L++   S     L+SR L  +  
Sbjct:     1 MELCT--RSTTIITHLPASFNGHGYLAGKSVDRISLPLQRNVASLV---LQSRTLRCSRK 55

Query:    61 LPKAT-SEETSSGTDQYVVDKRDGATAAEDVPAVEKNVYNESVATAVPKEESPVDGLTNE 119
              P  T +EETS+G +++ V+ RDG   A    A EKN  +E    A   E+     L  E
Sbjct:    56 FPGETVTEETSTGVNEFGVEDRDGVVVA----AEEKNSNSE----APQAEDEETQAL--E 105

Query:   120 LLDNLKIKFDSEDKYSLVLYXXXXXXXXXXXXXXXXXIDSIPLFPKLMEVVGLGYTLWFS 179
              L+++K+  DS+  YS++LY                 +++IPLFPKLMEVVGLGYTLWF+
Sbjct:   106 FLNDIKL--DSDKTYSILLYGSGAIVALYLTSAIVSSLEAIPLFPKLMEVVGLGYTLWFT 163

Query:   180 WRYLLFKKNRDELATKIEELKQQVLGSNDD 209
              RYLLFK+NR+EL TK+ E+K+QVLGS+ +
Sbjct:   164 TRYLLFKRNREELKTKVSEIKKQVLGSDSE 193

GO:0009507 "chloroplast" evidence=ISM

GO:0009535 "chloroplast thylakoid membrane" evidence=IDA

TAIR|locus:2125018 AT4G01150 "AT4G01150" [Arabidopsis thaliana (taxid:3702)]

 Score = 218 (81.8 bits), Expect = 5.8e-18, P = 5.8e-18
 Identities = 49/109 (44%), Positives = 68/109 (62%)

Query:   100 ESVATAVPKEE-SPVDGLTNELLDNLKIKFDS-EDKYSLVLYXXXXXXXXXXXXXXXXXI 157
             E + T    EE S +D  TNEL+ +LK K+D  E+K ++++Y                 I
Sbjct:    57 ELLKTRASSEETSSID--TNELITDLKEKWDGLENKSTVLIYGGGAIVAVWLSSIVVGAI 114

Query:   158 DSIPLFPKLMEVVGLGYTLWFSWRYLLFKKNRDELATKIEELKQQVLGS 206
             +S+PL PK+ME+VGLGYT WF +RYLLFK +R ELA  IE LK+++ GS
Sbjct:   115 NSVPLLPKVMELVGLGYTGWFVYRYLLFKSSRKELAEDIESLKKKIAGS 163

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

GO:0009507 "chloroplast" evidence=ISM;IDA

GO:0009941 "chloroplast envelope" evidence=IDA

GO:0009535 "chloroplast thylakoid membrane" evidence=IDA

GO:0010287 "plastoglobule" evidence=IDA

GO:0009579 "thylakoid" evidence=IDA

GO:0009534 "chloroplast thylakoid" evidence=IDA

TAIR|locus:2044335 PSI-P "photosystem I P subunit" [Arabidopsis thaliana (taxid:3702)]

 Score = 138 (53.6 bits), Expect = 1.8e-09, P = 1.8e-09
 Identities = 31/119 (26%), Positives = 59/119 (49%)

Query:    93 VEKNVYNESVATAVPKEESPVDGLTNELLDNLKIKFDS----EDKYSLVLYXXXXXXXXX 148
             + +NV   +         +  +  T EL + +K   ++    +DKY++            
Sbjct:    56 IVRNVVTRATTEVGEAPATTTEAETTELPEIVKTAQEAWEKVDDKYAIGSLAFAGVVALW 115

Query:   149 XXXXXXXXIDSIPLFPKLMEVVGLGYTLWFSWRYLLFKKNRDELATKIEELKQQVLGSN 207
                     ID +PL P ++E+VG+GYT WF+++ L+FK +R+ L  K++   + +LGS+
Sbjct:   116 GSAGMISAIDRLPLVPGVLELVGIGYTGWFTYKNLVFKPDREALFEKVKSTYKDILGSS 174

GO:0009507 "chloroplast" evidence=ISM;IDA

GO:0003677 "DNA binding" evidence=ISS

GO:0009941 "chloroplast envelope" evidence=ISS;IDA

GO:0009535 "chloroplast thylakoid membrane" evidence=IDA

GO:0009773 "photosynthetic electron transport in photosystem I" evidence=IDA

GO:0030093 "chloroplast photosystem I" evidence=IMP;IDA

GO:0009295 "nucleoid" evidence=IDA

GO:0009508 "plastid chromosome" evidence=IDA

GO:0009579 "thylakoid" evidence=IDA

GO:0009534 "chloroplast thylakoid" evidence=IDA

GO:0009737 "response to abscisic acid stimulus" evidence=IDA

GO:0006098 "pentose-phosphate shunt" evidence=RCA

GO:0006364 "rRNA processing" evidence=RCA

GO:0009657 "plastid organization" evidence=RCA

GO:0010027 "thylakoid membrane organization" evidence=RCA

GO:0010207 "photosystem II assembly" evidence=RCA

GO:0015979 "photosynthesis" evidence=RCA

GO:0019684 "photosynthesis, light reaction" evidence=RCA

GO:0035304 "regulation of protein dephosphorylation" evidence=RCA

TAIR|locus:2037435 AT1G52220 "AT1G52220" [Arabidopsis thaliana (taxid:3702)]

 Score = 117 (46.2 bits), Expect = 2.9e-07, P = 2.9e-07
 Identities = 28/107 (26%), Positives = 53/107 (49%)

Query:   101 SVATAVPKEESPVDGLTN-ELLDNLKIKFD-SEDKYSLVLYXXXXXXXXXXXXXXXXXID 158
             S++  V       D  T+ +++  ++  +D SED+  L+                   ID
Sbjct:    49 SISLMVKASGESSDSSTDLDVVSTIQNVWDKSEDRLGLIGLGFAGIVALWASLNLITAID 108

Query:   159 SIPLFPKLMEVVGLGYTLWFSWRYLLFKKNRDELATKIEELKQQVLG 205
              +P+     E+VG+ ++ WF++RYLLFK +R EL+  +++    +LG
Sbjct:   109 KLPVISSGFELVGILFSTWFTYRYLLFKPDRQELSKIVKKSVADILG 155


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.312   0.130   0.366    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      209       180   0.00092  109 3  11 23  0.49    32
                                                     31  0.39    35


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  4
  No. of states in DFA:  590 (63 KB)
  Total size of DFA:  148 KB (2090 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  17.57u 0.12s 17.69t   Elapsed:  00:00:01
  Total cpu time:  17.57u 0.12s 17.69t   Elapsed:  00:00:01
  Start:  Fri May 10 20:02:34 2013   End:  Fri May 10 20:02:35 2013

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

GO:0009507 "chloroplast" evidence=ISM;IDA

GO:0009535 "chloroplast thylakoid membrane" evidence=IDA

GO:0006364 "rRNA processing" evidence=RCA

GO:0009657 "plastid organization" evidence=RCA

GO:0010103 "stomatal complex morphogenesis" evidence=RCA

GO:0010207 "photosystem II assembly" evidence=RCA

GO:0019684 "photosynthesis, light reaction" evidence=RCA

GO:0035304 "regulation of protein dephosphorylation" evidence=RCA

GO:0043085 "positive regulation of catalytic activity" evidence=RCA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	GSVIVG00011469001	SubName- Full=Chromosome undetermined scaffold_310, whole genome shotgun sequence; (204 aa)
		(Vitis vinifera)
Predicted Functional Partners:
	GSVIVG00027603001	SubName- Full=Chromosome chr19 scaffold_4, whole genome shotgun sequence; (254 aa)			•						0.505
	GSVIVG00002625001	SubName- Full=Chromosome undetermined scaffold_133, whole genome shotgun sequence; (149 aa)			•						0.505
	GSVIVG00007397001	SubName- Full=Chromosome chr16 scaffold_189, whole genome shotgun sequence; (251 aa)			•						0.504
	GSVIVG00004124001	SubName- Full=Chromosome undetermined scaffold_608, whole genome shotgun sequence; (162 aa)			•						0.502
	GSVIVG00035652001	SubName- Full=Chromosome undetermined scaffold_79, whole genome shotgun sequence; (199 aa)			•						0.501
	GSVIVG00020301001	SubName- Full=Chromosome chr5 scaffold_2, whole genome shotgun sequence; (293 aa)			•						0.501
	cemA	RecName- Full=Chloroplast envelope membrane protein;; May be involved in proton extrusion. Indi [...] (226 aa)			•						0.500
	GSVIVG00017320001	SubName- Full=Chromosome chr6 scaffold_15, whole genome shotgun sequence; (94 aa)			•						0.500
	GSVIVG00009465001	SubName- Full=Chromosome undetermined scaffold_235, whole genome shotgun sequence; (234 aa)			•						0.500
	GSVIVG00034898001	SubName- Full=Chromosome chr4 scaffold_73, whole genome shotgun sequence; (285 aa)			•						0.499

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	209
pfam14159	90	pfam14159, DUF4308, Domain of unknown function (DU	1e-33
PLN02777	167	PLN02777, PLN02777, photosystem I P subunit (PSI-P	1e-16

>gnl|CDD|222574 pfam14159, DUF4308, Domain of unknown function (DUF4308)

 Score =  115 bits (290), Expect = 1e-33
 Identities = 45/81 (55%), Positives = 59/81 (72%), Gaps = 4/81 (4%)

Query: 129 DSEDKYSLVLYGTGA----LLALWLTTVVVGAIDSIPLFPKLMEVVGLGYTLWFSWRYLL 184
             EDKY   L G GA    ++ALWL+  V+ AIDSIPL P L+E+VGLGY+ WF +RYLL
Sbjct: 10  KFEDKYKRPLLGVGAIIAVIVALWLSAAVLDAIDSIPLLPGLLELVGLGYSGWFVYRYLL 69

Query: 185 FKKNRDELATKIEELKQQVLG 205
           F ++R EL  KI+ELK+++LG
Sbjct: 70  FSEDRQELLAKIQELKKEILG 90

This presumed domain is functionally uncharacterized. This domain family is found in bacteria and eukaryotes, and is approximately 90 amino acids in length. The domain is found in several amino-acyl tRNA synthetase enzymes as well as in isolation in single domain proteins. Length = 90

>gnl|CDD|178376 PLN02777, PLN02777, photosystem I P subunit (PSI-P)

 Score = 73.9 bits (181), Expect = 1e-16
 Identities = 36/102 (35%), Positives = 67/102 (65%), Gaps = 4/102 (3%)

Query: 110 ESPVDGLTNELLDNLKIKFDS----EDKYSLVLYGTGALLALWLTTVVVGAIDSIPLFPK 165
           E+P +  T EL + +K   ++    EDKY++       ++ALW +  ++ AID +PL P 
Sbjct: 66  EAPAEVETTELPEIVKTVQEAWDKVEDKYAVSSLAFAGVVALWGSAGMISAIDRLPLVPG 125

Query: 166 LMEVVGLGYTLWFSWRYLLFKKNRDELATKIEELKQQVLGSN 207
           ++E+VG+GYT WF+++ L+FK +R+ L  KI++  ++++GS+
Sbjct: 126 VLELVGIGYTGWFAYKNLVFKPDREALIEKIKDTYKEIIGSS 167

Length = 167

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	209
PLN02777	167	photosystem I P subunit (PSI-P)	100.0
PF14159	90	CAAD: CAAD domains of cyanobacterial aminoacyl-tRN	99.95

>PLN02777 photosystem I P subunit (PSI-P)

Probab=100.00  E-value=5.1e-34  Score=238.71  Aligned_cols=90  Identities=36%  Similarity=0.764  Sum_probs=87.9

Q ss_pred             hHHHHHHhhhhccc-cCcchhhhhhHHHHHHHHHHHHHHHHhccCCCccchheeeeeeeeeeehhhhcccccchHHHHHH
Q 028427          117 TNELLDNLKIKFDS-EDKYSLVLYGTGALLALWLTTVVVGAIDSIPLFPKLMEVVGLGYTLWFSWRYLLFKKNRDELATK  195 (209)
Q Consensus       117 ~~Evl~~L~~kwd~-e~K~~v~l~g~gaiVal~v~~aVL~AIdsIPLLp~lLELVGLgYt~WFvyRyLLf~e~RqEL~~k  195 (209)
                      .+|+++.++++||. |||++++++++++||++|++.+||+|||+|||+|++||||||||++||+||||+|+++|+||+++
T Consensus        76 ~~ei~k~~~e~Wd~~EdK~av~~l~~aaiVal~v~~~VL~AId~lPLlP~lLELVGigYs~WF~yRyLLfke~ReeL~~k  155 (167)
T PLN02777         76 LPEIVKTVQEAWDKVEDKYAVSSLAFAGVVALWGSAGMISAIDRLPLVPGVLELVGIGYTGWFAYKNLVFKPDREALIEK  155 (167)
T ss_pred             HHHHHHHHHHHHhhhcchhHHHHHHHHHHHHHHHHHHHHHHHhccccccchHHHhhhhhhhhhhhhHhcCcccHHHHHHH
Confidence            56999999999995 99999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHhhhhcCC
Q 028427          196 IEELKQQVLGS  206 (209)
Q Consensus       196 I~~lk~~IlG~  206 (209)
                      |+++|++|+|+
T Consensus       156 i~~lk~~IlG~  166 (167)
T PLN02777        156 IKDTYKEIIGS  166 (167)
T ss_pred             HHHHHHHhhCC
Confidence            99999999996

>PF14159 CAAD: CAAD domains of cyanobacterial aminoacyl-tRNA synthetase

Probab=99.95  E-value=7.1e-30  Score=194.21  Aligned_cols=84  Identities=49%  Similarity=0.890  Sum_probs=72.9

Q ss_pred             HHhhhhccc-cCcchhhhhhH----HHHHHHHHHHHHHHHhccCCCccchheeeeeeeeeeehhhhcccccchHHHHHHH
Q 028427          122 DNLKIKFDS-EDKYSLVLYGT----GALLALWLTTVVVGAIDSIPLFPKLMEVVGLGYTLWFSWRYLLFKKNRDELATKI  196 (209)
Q Consensus       122 ~~L~~kwd~-e~K~~v~l~g~----gaiVal~v~~aVL~AIdsIPLLp~lLELVGLgYt~WFvyRyLLf~e~RqEL~~kI  196 (209)
                      ++++++|+. .++|...++++    ++++++|++.+|++|||+|||+|++|||||+||++||+||||+++++||||.+++
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~ii~~iv~l~v~~~vl~aIn~iPll~~llElvGlgyt~wF~~ryLL~~~~R~el~~~i   81 (90)
T PF14159_consen    2 SKLPEYWGEFFDKYKRPLLTIGAIIAVIVALWVSAAVLDAINSIPLLPGLLELVGLGYTGWFVYRYLLFAENRQELLQKI   81 (90)
T ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcchHHHHHHHHHHHHhHHHHHHHcChHhHHHHHHHH
Confidence            445555653 45555554444    5599999999999999999999999999999999999999999999999999999


Q ss_pred             HHHhhhhcC
Q 028427          197 EELKQQVLG  205 (209)
Q Consensus       197 ~~lk~~IlG  205 (209)
                      +++|++|+|
T Consensus        82 ~~~k~~i~G   90 (90)
T PF14159_consen   82 QSLKKEILG   90 (90)
T ss_pred             HHHHHHhcC
Confidence            999999998

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00