Citrus Sinensis ID: 028429

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------21
Protein Sequence
MIARRRSTTSGFAVVDSILLRSLRDHYEEVAKMTPPPKVSPPSSFTIVKGALDTHGPVLKRMYGSEQISIYVTRLGNIIRGGDDDDDDDDGINQLFLHVEMSKPGQKNSLLFLCGLYPDALGIHSVSMRPNLESEGILVVPSQYTGPSFQDLDERMRDALHSYIEERGVNESLFPFLQAWLYVKDNRNLMHWFRQVGQYISGKNHAKGT
Secondary Structure (PSIPRED)
ccccccccccccccccHHHHHHHHHHHHHHHHcccccccccccccEEEEcccccccEEEEEEccccEEEEEEEEccccccccccccccccccccEEEEEEEEccccccEEEEEEEEEccEEEEEEEEEcccccccccccccccccccccccccHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccc
Secondary Structure Prediction (SSPRO)
ccccccccHccccHHHHHHHHHHHHHHHHHHccccccccccccccEEEEccccccEEEEEEEccccEEEEEEEEcccccccccccccccccccccEEEEEEEccccccEEEEEEEEccccEEEEEEEEEccccHHHHHcccccccccccccccHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccc
Coil and Loop (DISEMBL)
miarrrsttsgFAVVDSILLRSLRDHYEEvakmtpppkvsppssftivkgaldthgpvlkrmygseQISIYVTRLgniirggddddddddgiNQLFLHVemskpgqknsLLFLcglypdalgihsvsmrpnlesegilvvpsqytgpsfqdLDERMRDALHSYIEergvneslFPFLQAWLYVKDNRNLMHWFRQVGQYisgknhakgt
Flexible Loop (DISEMBL)
miarrrsttsgfavvdsILLRSLRDHYEEVAkmtpppkvsppssFTIVKGALDTHGPVLKRMYGSEQISIYVTRLGNIIRGGDDDDDDDDGINQLFLHVEMSKPGQKNSLLFLCGLYPDALGIHSVSMRPNLESEGILVVPSQYTGPSFQDLDERMRDALHSYIEERGVNESLFPFLQAWLYVKDNRNLMHWFRQVgqyisgknhakgt
Low Complexity Region (SEG)
MIARRRSTTSGFAVVDSILLRSLRDHYEEVAKMTPPPKVSPPSSFTIVKGALDTHGPVLKRMYGSEQISIYVTRLGNIIRggddddddddgINQLFLHVEMSKPGQKNSLLFLCGLYPDALGIHSVSMRPNLESEGILVVPSQYTGPSFQDLDERMRDALHSYIEERGVNESLFPFLQAWLYVKDNRNLMHWFRQVGQYISGKNHAKGT
Disordered region (IsUnstruct)
***********FAVVDSILLRSLRDHY*****************FTIVKGALDTHGPVLKRMYGSEQISIYVTRLGNII****************FLHV********NSLLFLCGLYPDALGIHSVSMRPNLESEGILVVPSQYTGPSFQDLDERMRDALHSYIEERGVNESLFPFLQAWLYVKDNRNLMHWFRQVGQYI*********
Disordered Region (DISOPRED)
*********************SLRD***********************KGALDTHGPVLKRMYGSEQISIYVTRL*******************LFLHVEMSKPGQKNSLLFLCGLYPDALGIHSVSMRPNLESEGILVVPSQYTGPSFQDLDERMRDALHSYIEERGVNESLFPFLQAWLYVKDNRNLMHWFRQVGQ***********
Disordered Region (DISEMBL)
**********GFAVVDSILLRSLRDHYEEVAKMTPPPKVSPPSSFTIVKGALDTHGPVLKRMYGSEQISIYVTRLGNIIRGGDDDDDDDDGINQLFLHVEMSKPGQKNSLLFLCGLYPDALGIHSVSMRPNLESEGILVVPSQYTGPSFQDLDERMRDALHSYIEERGVNESLFPFLQAWLYVKDNRNLMHWFRQVGQYISGKNHAKGT
Disordered Region (DISPRO)
************AVVDSILLRSLRDHYEEVAKMTPPPKVSPPSSFTIVKGALDTHGPVLKRMYGSEQISIYVTRLGNI*************INQLFLHVEMSKPGQKNSLLFLCGLYPDALGIHSVSMRPNLESEGILVVPSQYTGPSFQDLDERMRDALHSYIEERGVNESLFPFLQAWLYVKDNRNLMHWFRQVGQYISGK******
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MIARRRSTTSGFAVVDSILLRSLRDHYEEVAKMTPPPKVSPPSSFTIVKGALDTHGPVLKRMYGSEQISIYVTRLGNIIRGGDDDDDDDDGINQLFLHVEMSKPGQKNSLLFLCGLYPDALGIHSVSMRPNLESEGILVVPSQYTGPSFQDLDERMRDALHSYIEERGVNESLFPFLQAWLYVKDNRNLMHWFRQVGQYISGKNHAKGT
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	209	2.2.26 [Sep-21-2011]
O94675	269	Mitochondrial acidic prot	yes	no	0.483	0.375	0.305	3e-09
P40513	266	Mitochondrial acidic prot	yes	no	0.746	0.586	0.233	6e-09
Q8W487	250	Uncharacterized protein A	no	no	0.421	0.352	0.311	2e-07

>sp|O94675|MAM33_SCHPO Mitochondrial acidic protein mam33 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPBC776.07 PE=3 SV=1

 Score = 62.0 bits (149), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 33/108 (30%), Positives = 58/108 (53%), Gaps = 7/108 (6%)

Query: 99  VEMSKPGQKNSLLFLCGLYPDALGIHSVSMRPNLES------EGILVVPSQYTGPSFQDL 152
           +E+SKPG   +L+F      D   I ++    +++       E       QY GPSF++L
Sbjct: 162 IEISKPG-NGALVFEATALDDGFDIENIYFSKDIDMLTSDSLEAEWKRRKQYLGPSFKEL 220

Query: 153 DERMRDALHSYIEERGVNESLFPFLQAWLYVKDNRNLMHWFRQVGQYI 200
           D  ++D  HSY+EER ++ESL  F+ ++   K+ +  ++W   V Q++
Sbjct: 221 DPELQDLFHSYLEERKIDESLSSFIVSFGLTKELKEYINWLESVRQFL 268

Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812)

>sp|P40513|MAM33_YEAST Mitochondrial acidic protein MAM33 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=MAM33 PE=1 SV=1

 Score = 60.8 bits (146), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 42/180 (23%), Positives = 82/180 (45%), Gaps = 24/180 (13%)

Query: 45  FTIVKGALDTHGPVLKRMYGSEQISIY--VTRLGNIIRGGDDDDD---DDDGINQ----- 94
           F++V+        +++R    E + ++  V ++ N+      D++   ++DGIN+     
Sbjct: 86  FSLVETPGKNEAEIVRRTESGETVHVFFDVAQIANLPYNNAMDENTEQNEDGINEDDFDA 145

Query: 95  -----LFLHVEMSKPGQKN---SLLFLCGLYPDALGIHSVSMRP------NLESEGILVV 140
                  ++V +SK        S   L  L   +  + S +  P      N  +E  +  
Sbjct: 146 LSDNFANVNVVISKESASEPAVSFELLMNLQEGSFYVDSATPYPSVDAALNQSAEAEITR 205

Query: 141 PSQYTGPSFQDLDERMRDALHSYIEERGVNESLFPFLQAWLYVKDNRNLMHWFRQVGQYI 200
              Y GP F +LDE ++++L +Y+E RGVNE L  F+ A+   K+N   + W  ++ ++ 
Sbjct: 206 ELVYHGPPFSNLDEELQESLEAYLESRGVNEELASFISAYSEFKENNEYISWLEKMKKFF 265

Not known. Binds to the sorting sequence of cytochrome b2.

Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (taxid: 559292)

>sp|Q8W487|YB95_ARATH Uncharacterized protein At2g39795, mitochondrial OS=Arabidopsis thaliana GN=At2g39795 PE=1 SV=1

 Score = 55.8 bits (133), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 29/93 (31%), Positives = 48/93 (51%), Gaps = 5/93 (5%)

Query: 109 SLLFLCGLYPDALGIHSVSMR-PNLESEGILVVPSQYTGPSFQDLDERMRDALHSYIEER 167
           +L F C  +PD + I ++S++ P    E  L       GP F+DLDE ++   + ++E R
Sbjct: 160 TLEFSCMAFPDEIAIDALSVKHPGDSLEDQLA----NEGPDFEDLDENLKKTFYKFLEIR 215

Query: 168 GVNESLFPFLQAWLYVKDNRNLMHWFRQVGQYI 200
           GV  S   FL  ++  K NR    W + V +++
Sbjct: 216 GVKASTTNFLHEYMTRKVNREYFLWLKNVKEFM 248

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	209
225463723	229	PREDICTED: uncharacterized protein LOC10	0.976	0.890	0.743	6e-77
255570730	225	conserved hypothetical protein [Ricinus	1.0	0.928	0.687	1e-73
356553032	215	PREDICTED: mitochondrial acidic protein	0.904	0.879	0.673	6e-73
351722430	215	uncharacterized protein LOC100527468 [Gl	0.899	0.874	0.661	2e-71
357494553	221	Mitochondrial acidic protein MAM33 [Medi	0.942	0.891	0.635	8e-71
449446313	230	PREDICTED: uncharacterized protein At2g3	0.928	0.843	0.675	2e-68
224110094	229	predicted protein [Populus trichocarpa]	1.0	0.912	0.596	9e-63
297798700	549	hypothetical protein ARALYDRAFT_328472 [	0.918	0.349	0.651	5e-62
3063709	557	putative protein [Arabidopsis thaliana]	0.918	0.344	0.641	4e-61
145334201	227	Mitochondrial glycoprotein family protei	0.918	0.845	0.641	1e-60

>gi|225463723|ref|XP_002264200.1| PREDICTED: uncharacterized protein LOC100247464 [Vitis vinifera]

 Score =  292 bits (747), Expect = 6e-77,   Method: Compositional matrix adjust.
 Identities = 154/207 (74%), Positives = 179/207 (86%), Gaps = 3/207 (1%)

Query: 1   MIARRRSTTSGFAVVDSILLRSLRDHYEEVAKMTPPPKVSPPSSFTIVKGALDTHGPVLK 60
           MI+ R    S  + V+S+LLRSLRDHY EV+KMTPPPKVSPPS F+I+KGALD+ GPVLK
Sbjct: 20  MISSRPPPVSVSSAVNSMLLRSLRDHYLEVSKMTPPPKVSPPSPFSIIKGALDSEGPVLK 79

Query: 61  RMYGSEQISIYVTRLGNIIRGGDDDDDDDDGINQLFLHVEMSKPGQKNSLLFLCGLYPDA 120
           R YG+E+ISIYV RL NII GGDD+DD+   INQLFLHV++SKPGQK+SL FLCGLYPDA
Sbjct: 80  RSYGNEEISIYVMRLANIIPGGDDEDDN---INQLFLHVQVSKPGQKDSLHFLCGLYPDA 136

Query: 121 LGIHSVSMRPNLESEGILVVPSQYTGPSFQDLDERMRDALHSYIEERGVNESLFPFLQAW 180
           LGIHSVSMRP L+S G LV+PSQY GP FQDL+ERMRDALHSYIEERGVNESLFPFLQAW
Sbjct: 137 LGIHSVSMRPKLQSSGFLVLPSQYNGPVFQDLNERMRDALHSYIEERGVNESLFPFLQAW 196

Query: 181 LYVKDNRNLMHWFRQVGQYISGKNHAK 207
           LYVKD+RNLMHWF++VG +I+ +  +K
Sbjct: 197 LYVKDHRNLMHWFQRVGTFINEQKPSK 223

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255570730|ref|XP_002526319.1| conserved hypothetical protein [Ricinus communis] gi|223534346|gb|EEF36055.1| conserved hypothetical protein [Ricinus communis]

 Score =  281 bits (719), Expect = 1e-73,   Method: Compositional matrix adjust.
 Identities = 145/211 (68%), Positives = 171/211 (81%), Gaps = 2/211 (0%)

Query: 1   MIARRRSTTSG--FAVVDSILLRSLRDHYEEVAKMTPPPKVSPPSSFTIVKGALDTHGPV 58
           MI+ RRS+T+    + VDS+LLRSL+DHY EVAKM PPPKVSPPS+FTI+KGALD +GPV
Sbjct: 15  MISTRRSSTTNNMSSAVDSMLLRSLKDHYLEVAKMNPPPKVSPPSAFTILKGALDGNGPV 74

Query: 59  LKRMYGSEQISIYVTRLGNIIRGGDDDDDDDDGINQLFLHVEMSKPGQKNSLLFLCGLYP 118
           L R YG+E+I+I V RL NII GG  +DDDD GINQLFLHV++SKPG++ SL FLCGLYP
Sbjct: 75  LTRTYGNEEINISVMRLANIIPGGGGEDDDDGGINQLFLHVDVSKPGEQKSLHFLCGLYP 134

Query: 119 DALGIHSVSMRPNLESEGILVVPSQYTGPSFQDLDERMRDALHSYIEERGVNESLFPFLQ 178
           DALGIHSVSMR  ++  G L VPS Y GP F++LDERMRDALHSYIEERGVNE LF FLQ
Sbjct: 135 DALGIHSVSMRSKIDDSGFLEVPSAYNGPLFEELDERMRDALHSYIEERGVNEGLFNFLQ 194

Query: 179 AWLYVKDNRNLMHWFRQVGQYISGKNHAKGT 209
           AWLYVKD+RNLM WF+ VG +I+    A  +
Sbjct: 195 AWLYVKDHRNLMRWFKTVGTFINENKSANTS 225

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356553032|ref|XP_003544862.1| PREDICTED: mitochondrial acidic protein MAM33-like [Glycine max]

 Score =  279 bits (713), Expect = 6e-73,   Method: Compositional matrix adjust.
 Identities = 132/196 (67%), Positives = 157/196 (80%), Gaps = 7/196 (3%)

Query: 14  VVDSILLRSLRDHYEEVAKMTPPPKVSPPSSFTIVKGALDTHGPVLKRMYGSEQISIYVT 73
            V+S+LLRSL+DHY+EVAKM  PPKVSPPS FTIVKGALD+HGPVLKR YG E++SIYV 
Sbjct: 27  AVNSMLLRSLKDHYQEVAKMNMPPKVSPPSPFTIVKGALDSHGPVLKRSYGDEEVSIYVM 86

Query: 74  RLGNIIRGGDDDDDDDDGINQLFLHVEMSKPGQKNSLLFLCGLYPDALGIHSVSMRPNLE 133
           RL          +D+D  I+QLF+HV++SKP Q  SL+FLCGLY DALGIHSVSMRP ++
Sbjct: 87  RLLT-------PEDEDSAIDQLFIHVDVSKPQQNESLIFLCGLYEDALGIHSVSMRPKVQ 139

Query: 134 SEGILVVPSQYTGPSFQDLDERMRDALHSYIEERGVNESLFPFLQAWLYVKDNRNLMHWF 193
             G L++PSQYTGP F +LDE+MRDA HSYIEERGVNESLF FLQAWLYVK++RNLM WF
Sbjct: 140 DSGYLLIPSQYTGPVFAELDEKMRDAFHSYIEERGVNESLFKFLQAWLYVKEHRNLMRWF 199

Query: 194 RQVGQYISGKNHAKGT 209
           + +G +I GK  A G 
Sbjct: 200 KTMGLFIDGKKPATGA 215

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|351722430|ref|NP_001236476.1| uncharacterized protein LOC100527468 [Glycine max] gi|255632420|gb|ACU16560.1| unknown [Glycine max]

 Score =  273 bits (699), Expect = 2e-71,   Method: Compositional matrix adjust.
 Identities = 129/195 (66%), Positives = 156/195 (80%), Gaps = 7/195 (3%)

Query: 15  VDSILLRSLRDHYEEVAKMTPPPKVSPPSSFTIVKGALDTHGPVLKRMYGSEQISIYVTR 74
           V+S+LLRSL+DHY+EVAKM  PPKVS PS FTIVKGALD+HGPVLKR YG+E++SIYV R
Sbjct: 28  VNSMLLRSLKDHYQEVAKMNMPPKVSAPSPFTIVKGALDSHGPVLKRSYGNEEVSIYVMR 87

Query: 75  LGNIIRGGDDDDDDDDGINQLFLHVEMSKPGQKNSLLFLCGLYPDALGIHSVSMRPNLES 134
           L          +D+D  I+QLF+HV++SKP Q  SL+FLCGLY DALGIHSVSMRP ++ 
Sbjct: 88  LLT-------PEDEDSAIDQLFIHVDVSKPQQNESLIFLCGLYEDALGIHSVSMRPKVQD 140

Query: 135 EGILVVPSQYTGPSFQDLDERMRDALHSYIEERGVNESLFPFLQAWLYVKDNRNLMHWFR 194
            G L++PSQYTGP F +LDE+MRDA HSYIEERGVNESLF FLQAWLYVK++RNLM WF+
Sbjct: 141 SGYLLIPSQYTGPVFAELDEKMRDAFHSYIEERGVNESLFKFLQAWLYVKEHRNLMRWFK 200

Query: 195 QVGQYISGKNHAKGT 209
            +G ++ GK    G 
Sbjct: 201 TMGLFVDGKKPVTGA 215

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357494553|ref|XP_003617565.1| Mitochondrial acidic protein MAM33 [Medicago truncatula] gi|355518900|gb|AET00524.1| Mitochondrial acidic protein MAM33 [Medicago truncatula]

 Score =  272 bits (695), Expect = 8e-71,   Method: Compositional matrix adjust.
 Identities = 134/211 (63%), Positives = 162/211 (76%), Gaps = 14/211 (6%)

Query: 4   RRRSTTSGF-------AVVDSILLRSLRDHYEEVAKMTPPPKVSPPSSFTIVKGALDTHG 56
           R R+T SG        + VD+++LRSL++HY EVAKM  PPKVSPPS+FTIVKGALD+ G
Sbjct: 14  RHRTTPSGVRGAATMSSAVDTMVLRSLKEHYMEVAKMNMPPKVSPPSNFTIVKGALDSEG 73

Query: 57  PVLKRMYGSEQISIYVTRLGNIIRGGDDDDDDDDGINQLFLHVEMSKPGQKNSLLFLCGL 116
           PVLKR YG E+ISIYV RL NI       ++ D  I+QLF+HV++SKP QK SL FLCGL
Sbjct: 74  PVLKRNYGEEEISIYVMRLNNI------GEEQDGAIDQLFIHVDVSKPEQKESLNFLCGL 127

Query: 117 YPDALGIHSVSMRPNL-ESEGILVVPSQYTGPSFQDLDERMRDALHSYIEERGVNESLFP 175
           Y DALGIHSVSMRP L +S G ++ P+ YTGP F +LDE+MRDA HSYIEERGVN+SLF 
Sbjct: 128 YEDALGIHSVSMRPKLLDSSGYILTPTHYTGPVFAELDEKMRDAFHSYIEERGVNDSLFK 187

Query: 176 FLQAWLYVKDNRNLMHWFRQVGQYISGKNHA 206
           FLQAWLYVK++RNLM WF+ +G +I GK  A
Sbjct: 188 FLQAWLYVKEHRNLMRWFKTMGLFIDGKKQA 218

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449446313|ref|XP_004140916.1| PREDICTED: uncharacterized protein At2g39795, mitochondrial-like [Cucumis sativus]

 Score =  264 bits (674), Expect = 2e-68,   Method: Compositional matrix adjust.
 Identities = 133/197 (67%), Positives = 159/197 (80%), Gaps = 3/197 (1%)

Query: 6   RSTTSGFAVVDSILLRSLRDHYEEVAKMTPPPKVSPPSSFTIVKGALDTHGPVLKRMYGS 65
           R +TS  + V+S LLRSL++HY E+ +M  PPKVSPPSSF+I+ GALD +GPVL + YG 
Sbjct: 26  RHSTSASSAVNSFLLRSLKEHYLEITRMAAPPKVSPPSSFSIIVGALDGNGPVLTKNYGK 85

Query: 66  EQISIYVTRLGNIIRGGDDDDDDDDGINQLFLHVEMSKPGQKNSLLFLCGLYPDALGIHS 125
           E+I+I V RL NI+RGG   DDDD+ INQLFLHV +SK  QK++L FLCGLYPDALGIHS
Sbjct: 86  EEINISVMRLANIVRGGGGGDDDDE-INQLFLHVTVSKLEQKDNLHFLCGLYPDALGIHS 144

Query: 126 VSMRPNLESEG--ILVVPSQYTGPSFQDLDERMRDALHSYIEERGVNESLFPFLQAWLYV 183
           VSMRP  ES G   LVVPS Y GP+F+DLDE+MRD  H+YIEERGVNESLFPFLQAWLYV
Sbjct: 145 VSMRPKAESSGSGFLVVPSSYNGPTFEDLDEKMRDMFHNYIEERGVNESLFPFLQAWLYV 204

Query: 184 KDNRNLMHWFRQVGQYI 200
           K++RNL+ WFR VG +I
Sbjct: 205 KEHRNLLRWFRSVGTFI 221

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224110094|ref|XP_002315413.1| predicted protein [Populus trichocarpa] gi|222864453|gb|EEF01584.1| predicted protein [Populus trichocarpa]

 Score =  245 bits (625), Expect = 9e-63,   Method: Compositional matrix adjust.
 Identities = 127/213 (59%), Positives = 163/213 (76%), Gaps = 4/213 (1%)

Query: 1   MIARRRST----TSGFAVVDSILLRSLRDHYEEVAKMTPPPKVSPPSSFTIVKGALDTHG 56
           MIA +R      TS  A VD++LLR L++HY EV+KM PPPK++PPS F+IVKGALD +G
Sbjct: 17  MIASKRCLSSPPTSKSASVDTLLLRYLKEHYVEVSKMNPPPKMNPPSEFSIVKGALDGNG 76

Query: 57  PVLKRMYGSEQISIYVTRLGNIIRGGDDDDDDDDGINQLFLHVEMSKPGQKNSLLFLCGL 116
           PVL R YG+E+I + V R+   + GG +DD++D+ +NQLFLHV++SKPGQ  SL FLCGL
Sbjct: 77  PVLTRTYGNEEIKLSVMRMAYAVPGGGEDDENDEDMNQLFLHVDVSKPGQDKSLHFLCGL 136

Query: 117 YPDALGIHSVSMRPNLESEGILVVPSQYTGPSFQDLDERMRDALHSYIEERGVNESLFPF 176
           YPDALG+HSVS+RP L+S   L V + Y+GP F +LDERMRDA H +IEERGV+E LF F
Sbjct: 137 YPDALGVHSVSLRPKLDSADFLEVTATYSGPQFAELDERMRDAFHGFIEERGVDEKLFNF 196

Query: 177 LQAWLYVKDNRNLMHWFRQVGQYISGKNHAKGT 209
           LQAWLYVK++R+LM WF+ VG YI+    AK +
Sbjct: 197 LQAWLYVKEHRSLMRWFKTVGMYINENKPAKSS 229

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297798700|ref|XP_002867234.1| hypothetical protein ARALYDRAFT_328472 [Arabidopsis lyrata subsp. lyrata] gi|297313070|gb|EFH43493.1| hypothetical protein ARALYDRAFT_328472 [Arabidopsis lyrata subsp. lyrata]

 Score =  243 bits (619), Expect = 5e-62,   Method: Compositional matrix adjust.
 Identities = 129/198 (65%), Positives = 158/198 (79%), Gaps = 6/198 (3%)

Query: 13  AVVDSILLRSLRDHYEEVAKMTPPPKVSPPSSFTIVKGALD-THGPVLKRMYGSEQISIY 71
           A VDS+LLRSL++HY EV+KMTPPPKVSPPS F IVKG+L+ +   VLK+  G+E+IS++
Sbjct: 356 AAVDSMLLRSLKEHYLEVSKMTPPPKVSPPSPFEIVKGSLEGSTSAVLKKSVGNEEISLF 415

Query: 72  VTRLGNIIRGGDDDDDDDDGINQLFLHVEMSKPGQKNSLLFLCGLYPDALGIHSVSMRPN 131
           V RL +   GGD++DDD  GINQLFLHV +SKP Q +SL FLCGLYPDALGIHSVSMRP 
Sbjct: 416 VMRLAH---GGDEEDDD--GINQLFLHVAVSKPNQADSLHFLCGLYPDALGIHSVSMRPK 470

Query: 132 LESEGILVVPSQYTGPSFQDLDERMRDALHSYIEERGVNESLFPFLQAWLYVKDNRNLMH 191
           LE   +   P+QYTGPSF++LDE+MRD  H Y+EERGVNESLFPFLQAWLYVKD+RNL+ 
Sbjct: 471 LEDLEMSDDPTQYTGPSFEELDEKMRDVFHGYLEERGVNESLFPFLQAWLYVKDHRNLLR 530

Query: 192 WFRQVGQYISGKNHAKGT 209
           WF+ VG ++     A+ T
Sbjct: 531 WFKSVGTFVHENPSAENT 548

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|3063709|emb|CAA18600.1| putative protein [Arabidopsis thaliana] gi|7270165|emb|CAB79978.1| putative protein [Arabidopsis thaliana]

 Score =  239 bits (611), Expect = 4e-61,   Method: Compositional matrix adjust.
 Identities = 127/198 (64%), Positives = 159/198 (80%), Gaps = 6/198 (3%)

Query: 13  AVVDSILLRSLRDHYEEVAKMTPPPKVSPPSSFTIVKGALD-THGPVLKRMYGSEQISIY 71
           A VDS+LLRSL++HY EV+KMTPPPKVSPPS F IVKG+L+ + G VLK+  G+E+I+++
Sbjct: 364 AAVDSMLLRSLKEHYLEVSKMTPPPKVSPPSPFEIVKGSLEGSTGAVLKKSVGNEEINLF 423

Query: 72  VTRLGNIIRGGDDDDDDDDGINQLFLHVEMSKPGQKNSLLFLCGLYPDALGIHSVSMRPN 131
           V RL +   GG  D++DD GINQLFLHV +SKP Q +SL FLCGLYPDALGIHSVSMRP 
Sbjct: 424 VMRLAH---GG--DEEDDGGINQLFLHVAVSKPNQPDSLHFLCGLYPDALGIHSVSMRPK 478

Query: 132 LESEGILVVPSQYTGPSFQDLDERMRDALHSYIEERGVNESLFPFLQAWLYVKDNRNLMH 191
           LE+  +   P+QYTGPSF++LDE+MRD  H ++EERGVNESLFPFLQAWLYVKD+RNL+ 
Sbjct: 479 LEALEMSDDPTQYTGPSFEELDEKMRDVFHGFLEERGVNESLFPFLQAWLYVKDHRNLLR 538

Query: 192 WFRQVGQYISGKNHAKGT 209
           WF+ VG ++     A+ T
Sbjct: 539 WFKSVGTFVHENPSAENT 556

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|145334201|ref|NP_001078481.1| Mitochondrial glycoprotein family protein [Arabidopsis thaliana] gi|22136062|gb|AAM91613.1| putative protein [Arabidopsis thaliana] gi|23197726|gb|AAN15390.1| putative protein [Arabidopsis thaliana] gi|222423299|dbj|BAH19625.1| AT4G32605 [Arabidopsis thaliana] gi|332660688|gb|AEE86088.1| Mitochondrial glycoprotein family protein [Arabidopsis thaliana]

 Score =  238 bits (607), Expect = 1e-60,   Method: Compositional matrix adjust.
 Identities = 127/198 (64%), Positives = 159/198 (80%), Gaps = 6/198 (3%)

Query: 13  AVVDSILLRSLRDHYEEVAKMTPPPKVSPPSSFTIVKGALD-THGPVLKRMYGSEQISIY 71
           A VDS+LLRSL++HY EV+KMTPPPKVSPPS F IVKG+L+ + G VLK+  G+E+I+++
Sbjct: 34  AAVDSMLLRSLKEHYLEVSKMTPPPKVSPPSPFEIVKGSLEGSTGAVLKKSVGNEEINLF 93

Query: 72  VTRLGNIIRGGDDDDDDDDGINQLFLHVEMSKPGQKNSLLFLCGLYPDALGIHSVSMRPN 131
           V RL +   GG  D++DD GINQLFLHV +SKP Q +SL FLCGLYPDALGIHSVSMRP 
Sbjct: 94  VMRLAH---GG--DEEDDGGINQLFLHVAVSKPNQPDSLHFLCGLYPDALGIHSVSMRPK 148

Query: 132 LESEGILVVPSQYTGPSFQDLDERMRDALHSYIEERGVNESLFPFLQAWLYVKDNRNLMH 191
           LE+  +   P+QYTGPSF++LDE+MRD  H ++EERGVNESLFPFLQAWLYVKD+RNL+ 
Sbjct: 149 LEALEMSDDPTQYTGPSFEELDEKMRDVFHGFLEERGVNESLFPFLQAWLYVKDHRNLLR 208

Query: 192 WFRQVGQYISGKNHAKGT 209
           WF+ VG ++     A+ T
Sbjct: 209 WFKSVGTFVHENPSAENT 226

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	209
TAIR|locus:4010713924	227	AT4G32605 [Arabidopsis thalian	0.918	0.845	0.611	2.4e-60
TAIR|locus:2025772	190	AT1G80720 "AT1G80720" [Arabido	0.851	0.936	0.292	1.6e-17
TAIR|locus:505006400	258	AT3G55605 "AT3G55605" [Arabido	0.421	0.341	0.365	5.8e-14
TAIR|locus:2036184	242	AT1G15870 "AT1G15870" [Arabido	0.665	0.574	0.251	1.9e-12
POMBASE|SPBC776.07	269	SPBC776.07 "mitochondrial Mam3	0.483	0.375	0.305	1.8e-10
TAIR|locus:2153649	259	AT5G05990 "AT5G05990" [Arabido	0.421	0.339	0.354	2.7e-10
TAIR|locus:2185093	267	AT5G02050 [Arabidopsis thalian	0.464	0.363	0.333	6.7e-10
TAIR|locus:2116597	234	AT4G31930 "AT4G31930" [Arabido	0.846	0.756	0.246	2.4e-08
SGD|S000001332	266	MAM33 "Michochondrial matrix p	0.358	0.281	0.333	5.1e-07
TAIR|locus:505006310	250	AT2G39795 [Arabidopsis thalian	0.421	0.352	0.311	3.8e-06

TAIR|locus:4010713924 AT4G32605 [Arabidopsis thaliana (taxid:3702)]

 Score = 618 (222.6 bits), Expect = 2.4e-60, P = 2.4e-60
 Identities = 121/198 (61%), Positives = 151/198 (76%)

Query:    13 AVVDSILLRSLRDHYEEVAKMTPPPKVSPPSSFTIVKGALD-THGPVLKRMYGSEQISIY 71
             A VDS+LLRSL++HY EV+KMTPPPKVSPPS F IVKG+L+ + G VLK+  G+E+I+++
Sbjct:    34 AAVDSMLLRSLKEHYLEVSKMTPPPKVSPPSPFEIVKGSLEGSTGAVLKKSVGNEEINLF 93

Query:    72 VTRLGNIIRXXXXXXXXXXXINQLFLHVEMSKPGQKNSLLFLCGLYPDALGIHSVSMRPN 131
             V RL +              INQLFLHV +SKP Q +SL FLCGLYPDALGIHSVSMRP 
Sbjct:    94 VMRLAH-----GGDEEDDGGINQLFLHVAVSKPNQPDSLHFLCGLYPDALGIHSVSMRPK 148

Query:   132 LESEGILVVPSQYTGPSFQDLDERMRDALHSYIEERGVNESLFPFLQAWLYVKDNRNLMH 191
             LE+  +   P+QYTGPSF++LDE+MRD  H ++EERGVNESLFPFLQAWLYVKD+RNL+ 
Sbjct:   149 LEALEMSDDPTQYTGPSFEELDEKMRDVFHGFLEERGVNESLFPFLQAWLYVKDHRNLLR 208

Query:   192 WFRQVGQYISGKNHAKGT 209
             WF+ VG ++     A+ T
Sbjct:   209 WFKSVGTFVHENPSAENT 226

GO:0005739 "mitochondrion" evidence=ISM;IDA

GO:0005759 "mitochondrial matrix" evidence=IEA

TAIR|locus:2025772 AT1G80720 "AT1G80720" [Arabidopsis thaliana (taxid:3702)]

 Score = 214 (80.4 bits), Expect = 1.6e-17, P = 1.6e-17
 Identities = 55/188 (29%), Positives = 87/188 (46%)

Query:    19 LLRSLRDHYEEVAKMTPPPKVSPPSSFT--IVKGALDTHGPVLKRMYGS-EQISIYVTRL 75
             +LR +R+  E     +PP  + PP+SF    V          LKR +G  E I I  T  
Sbjct:    10 ILRLIRNEIEYELDHSPP--LQPPNSFGPFTVDERPGEQWISLKRNFGDKEDIKIEATMF 67

Query:    76 GNIIRXXXXXXXXXXXINQLFLHVEMSKPGQKNSLLFLCGLYPDALGIHSVSMRPNLESE 135
                +            I  +   V +SK G   +L  +C  +PD + I  + +R      
Sbjct:    68 DRSVPTSKSTKTEPEYILHITFIVNISKAGATEALEIMCSAWPDTIEISKLCIR-----R 122

Query:   136 GILVVPSQYTGPSFQDLDERMRDALHSYIEERGVNESLFPFLQAWLYVKDNRNLMHWFRQ 195
             GI   PS Y GP F++LD++++DAL+ ++EERG+++ L  FL  ++  K     + W   
Sbjct:   123 GINTSPSSYGGPEFEELDDQLQDALYQFLEERGISDELAVFLHRYMKNKGKAEYVRWMES 182

Query:   196 VGQYISGK 203
             V  Y+  K
Sbjct:   183 VKSYVEQK 190

GO:0003674 "molecular_function" evidence=ND

GO:0005739 "mitochondrion" evidence=ISM

GO:0005759 "mitochondrial matrix" evidence=IEA;ISS

GO:0008150 "biological_process" evidence=ND

TAIR|locus:505006400 AT3G55605 "AT3G55605" [Arabidopsis thaliana (taxid:3702)]

 Score = 160 (61.4 bits), Expect = 5.8e-14, Sum P(2) = 5.8e-14
 Identities = 34/93 (36%), Positives = 53/93 (56%)

Query:   109 SLLFLCGLYPDALGIHSVSM-RPNLESEGILVVPSQYTGPSFQDLDERMRDALHSYIEER 167
             SL F C  +PD + I  +S+ RP+  SE  L     Y GP FQ+LDE MR + H ++E R
Sbjct:   168 SLEFSCTAFPDEIVIDGLSVNRPDDSSEEQLT----YDGPDFQELDENMRKSFHKFLETR 223

Query:   168 GVNESLFPFLQAWLYVKDNRNLMHWFRQVGQYI 200
             G+  S   FL  ++  KD+R  + W +++  ++
Sbjct:   224 GIKASATDFLYEYMMKKDSREYLLWLKKLKTFV 256

GO:0003674 "molecular_function" evidence=ND

GO:0005739 "mitochondrion" evidence=ISM

GO:0005759 "mitochondrial matrix" evidence=ISS

GO:0008150 "biological_process" evidence=ND

GO:0006626 "protein targeting to mitochondrion" evidence=RCA

GO:0009560 "embryo sac egg cell differentiation" evidence=RCA

GO:0009640 "photomorphogenesis" evidence=RCA

GO:0009909 "regulation of flower development" evidence=RCA

GO:0010388 "cullin deneddylation" evidence=RCA

GO:0034968 "histone lysine methylation" evidence=RCA

TAIR|locus:2036184 AT1G15870 "AT1G15870" [Arabidopsis thaliana (taxid:3702)]

 Score = 166 (63.5 bits), Expect = 1.9e-12, P = 1.9e-12
 Identities = 37/147 (25%), Positives = 70/147 (47%)

Query:    59 LKRMYGS-EQISIYVTRLGNIIRXXXXXXXXXXXIN-QLFLHVEMSKPGQKNSLLFLCGL 116
             L+R +G  E I I  T     +            +   +   V +SK G   +L  +C  
Sbjct:   102 LRRKFGEKEDIKIEATMFDGSVPSSKSTTSDPEDVQLHITFIVNISK-GDGETLEIMCSA 160

Query:   117 YPDALGIHSVSMRPNLESEGILVVPSQYTGPSFQDLDERMRDALHSYIEERGVNESLFPF 176
             +PD + I    +R + ++      P+ Y GP FQ++++ ++D+++ ++EERG+++ L  F
Sbjct:   161 WPDTIQITKFFVRKSSQNS-----PNAYIGPEFQEMEDELQDSVYRFLEERGISDDLAEF 215

Query:   177 LQAWLYVKDNRNLMHWFRQVGQYISGK 203
             L  ++  KD    + W   V  Y+  K
Sbjct:   216 LHQYMKNKDKAEYIRWMETVKSYVEQK 242

GO:0003674 "molecular_function" evidence=ND

GO:0005739 "mitochondrion" evidence=ISM

GO:0005759 "mitochondrial matrix" evidence=IEA;ISS

GO:0008150 "biological_process" evidence=ND

POMBASE|SPBC776.07 SPBC776.07 "mitochondrial Mam33 family protein (predicted)" [Schizosaccharomyces pombe (taxid:4896)]

 Score = 150 (57.9 bits), Expect = 1.8e-10, P = 1.8e-10
 Identities = 33/108 (30%), Positives = 60/108 (55%)

Query:    99 VEMSKPGQKNSLLFLCGLYPDALGIHSVSMRPNLE---SEGILVV---PSQYTGPSFQDL 152
             +E+SKPG   +L+F      D   I ++    +++   S+ +        QY GPSF++L
Sbjct:   162 IEISKPGN-GALVFEATALDDGFDIENIYFSKDIDMLTSDSLEAEWKRRKQYLGPSFKEL 220

Query:   153 DERMRDALHSYIEERGVNESLFPFLQAWLYVKDNRNLMHWFRQVGQYI 200
             D  ++D  HSY+EER ++ESL  F+ ++   K+ +  ++W   V Q++
Sbjct:   221 DPELQDLFHSYLEERKIDESLSSFIVSFGLTKELKEYINWLESVRQFL 268

GO:0000963 "mitochondrial RNA processing" evidence=ISS

GO:0003674 "molecular_function" evidence=ND

GO:0005737 "cytoplasm" evidence=IDA

GO:0005759 "mitochondrial matrix" evidence=ISO

GO:0009060 "aerobic respiration" evidence=ISO

TAIR|locus:2153649 AT5G05990 "AT5G05990" [Arabidopsis thaliana (taxid:3702)]

 Score = 148 (57.2 bits), Expect = 2.7e-10, P = 2.7e-10
 Identities = 33/93 (35%), Positives = 52/93 (55%)

Query:   109 SLLFLCGLYPDALGIHSVSMR-PNLESEGILVVPSQYTGPSFQDLDERMRDALHSYIEER 167
             SL F C  +PD + I  + +  P+  S+  L     Y GPSF+ LDE++R A H YIE R
Sbjct:   169 SLEFRCTAFPDRIAIKDMWVTFPDDPSKDELA----YEGPSFRVLDEKLRKAFHRYIEIR 224

Query:   168 GVNESLFPFLQAWLYVKDNRNLMHWFRQVGQYI 200
             G+  S+  FL  ++  KD+R  + W + +  ++
Sbjct:   225 GIKPSMINFLHEYMINKDSREHLLWLKSLKNFV 257

GO:0003674 "molecular_function" evidence=ND

GO:0005739 "mitochondrion" evidence=ISM

GO:0005759 "mitochondrial matrix" evidence=IEA;ISS

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2185093 AT5G02050 [Arabidopsis thaliana (taxid:3702)]

 Score = 145 (56.1 bits), Expect = 6.7e-10, P = 6.7e-10
 Identities = 34/102 (33%), Positives = 52/102 (50%)

Query:    99 VEMSKPGQKNSLLFLCGLYPDALGIHSVSMRPNLESEGILVVPSQYTGPSFQDLDERMRD 158
             V + K G    L F    YPD + I S+S++    S+  L     Y GP F DLDE ++ 
Sbjct:   169 VSVQK-GDGVCLEFGVSAYPDEIVIDSLSIKQPQGSDNDLA----YEGPDFDDLDENLQK 223

Query:   159 ALHSYIEERGVNESLFPFLQAWLYVKDNRNLMHWFRQVGQYI 200
             A H Y+E RG+  S   FL  ++  KD+R  + W + +  ++
Sbjct:   224 AFHRYLEIRGIKPSFTTFLADYVANKDSREYLQWLKDLKSFV 265

GO:0005739 "mitochondrion" evidence=ISM;IDA

GO:0005759 "mitochondrial matrix" evidence=IEA;ISS

GO:0008150 "biological_process" evidence=ND

GO:0001510 "RNA methylation" evidence=RCA

GO:0009220 "pyrimidine ribonucleotide biosynthetic process" evidence=RCA

TAIR|locus:2116597 AT4G31930 "AT4G31930" [Arabidopsis thaliana (taxid:3702)]

 Score = 138 (53.6 bits), Expect = 2.4e-08, P = 2.4e-08
 Identities = 47/191 (24%), Positives = 86/191 (45%)

Query:    17 SILLRSLRDHYEEVAKMTPPPKVSPP-SSFTIVKGALDTHGPVLKRMYGS-EQISIYVTR 74
             S +LR +R+  E  +   PP + +    SF+ V+        V+K  +G  E I +  T 
Sbjct:    51 SNILRIIRNEIEYQSDYAPPHQPATEFKSFS-VEDCPGEQCIVMKGKFGEDEDIKMEATM 109

Query:    75 LG---NIIRXXXXXXXXXXXINQLFLHVEMSKPGQKNSLLFLCGLYPDALGIHSV-SMRP 130
                  N+ R           ++ + L V++SK      + FLC ++P+ + I  +  +R 
Sbjct:   110 FDGFMNVPRAGLDASGHDVRLH-ISLLVDISKVDGSEEIEFLCSVWPNRIEIRKLYKLRR 168

Query:   131 NLESEGILVVPSQYTGPSFQDLDERMRDALHSYIEERGVNESLFPFLQAWLYVKDNRNLM 190
             N       +    Y GP+F +L    + A+  ++  RG++  L  FL  ++  KD   L+
Sbjct:   169 NK------ITGQPYMGPNFGNLKYDFQTAIREFLRVRGIDAELCFFLHEYMMNKDRIELI 222

Query:   191 HWFRQVGQYIS 201
              W R++  +IS
Sbjct:   223 QWLRKLNSFIS 233

GO:0003674 "molecular_function" evidence=ND

GO:0005739 "mitochondrion" evidence=ISM

GO:0005759 "mitochondrial matrix" evidence=IEA;ISS

GO:0008150 "biological_process" evidence=ND

SGD|S000001332 MAM33 "Michochondrial matrix protein involved in oxidative phosphorylation" [Saccharomyces cerevisiae (taxid:4932)]

 Score = 131 (51.2 bits), Expect = 5.1e-07, P = 5.1e-07
 Identities = 25/75 (33%), Positives = 42/75 (56%)

Query:   125 SVSMRPNLESEGILVVPSQYTGPSFQDLDERMRDALHSYIEERGVNESLFPFLQAWLYVK 184
             SV    N  +E  +     Y GP F +LDE ++++L +Y+E RGVNE L  F+ A+   K
Sbjct:   190 SVDAALNQSAEAEITRELVYHGPPFSNLDEELQESLEAYLESRGVNEELASFISAYSEFK 249

Query:   185 DNRNLMHWFRQVGQY 199
             +N   + W  ++ ++
Sbjct:   250 ENNEYISWLEKMKKF 264

GO:0009060 "aerobic respiration" evidence=IMP

GO:0003674 "molecular_function" evidence=ND

GO:0005759 "mitochondrial matrix" evidence=IEA;IDA

GO:0005739 "mitochondrion" evidence=IEA;IDA

TAIR|locus:505006310 AT2G39795 [Arabidopsis thaliana (taxid:3702)]

 Score = 124 (48.7 bits), Expect = 3.8e-06, P = 3.8e-06
 Identities = 29/93 (31%), Positives = 48/93 (51%)

Query:   109 SLLFLCGLYPDALGIHSVSMR-PNLESEGILVVPSQYTGPSFQDLDERMRDALHSYIEER 167
             +L F C  +PD + I ++S++ P    E  L       GP F+DLDE ++   + ++E R
Sbjct:   160 TLEFSCMAFPDEIAIDALSVKHPGDSLEDQLA----NEGPDFEDLDENLKKTFYKFLEIR 215

Query:   168 GVNESLFPFLQAWLYVKDNRNLMHWFRQVGQYI 200
             GV  S   FL  ++  K NR    W + V +++
Sbjct:   216 GVKASTTNFLHEYMTRKVNREYFLWLKNVKEFM 248

GO:0005739 "mitochondrion" evidence=ISM;IDA

GO:0005759 "mitochondrial matrix" evidence=IEA;ISS

GO:0009220 "pyrimidine ribonucleotide biosynthetic process" evidence=RCA

GO:0009640 "photomorphogenesis" evidence=RCA

GO:0009909 "regulation of flower development" evidence=RCA

GO:0010388 "cullin deneddylation" evidence=RCA

GO:0034968 "histone lysine methylation" evidence=RCA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: GSVIVG00002648001 SubName- Full=Chromosome undetermined scaffold_134, whole genome shotgun sequence; (229 aa) (Vitis vinifera)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	209
pfam02330	202	pfam02330, MAM33, Mitochondrial glycoprotein	8e-17

>gnl|CDD|216977 pfam02330, MAM33, Mitochondrial glycoprotein

 Score = 75.0 bits (184), Expect = 8e-17
 Identities = 49/183 (26%), Positives = 77/183 (42%), Gaps = 26/183 (14%)

Query: 41  PPSSFTIVKGALDTHGPVLKRMYGSEQISIY--VTRLGNIIRGGDDDDDDD--------- 89
           PP SF I     D     L R  G E+I +   V +       G+ D+  +         
Sbjct: 23  PPMSFDIEDTPGDAEV-KLTRKVGGEKIHVTFNVNQSVPPPYDGEMDESQEQEPEQTSTP 81

Query: 90  ---------DGINQLFLHVEMSKPGQKNSLLFLCGLYPDALGIHSVSMRPNLESEGILV- 139
                    D  N   L +E+SKPG   S+ F      D   +  V   P+ +S      
Sbjct: 82  NFVVEVPNNDNGNFPPLVLEISKPG--VSIEFEDEAQSDIFSVEEVYFYPSGDSLNQSAE 139

Query: 140 --VPSQYTGPSFQDLDERMRDALHSYIEERGVNESLFPFLQAWLYVKDNRNLMHWFRQVG 197
                 Y GPSF++LD  ++D  H Y+EERGV+ +   FL A+   K+++  + W  +V 
Sbjct: 140 AEWRDTYYGPSFKNLDPELQDLFHRYLEERGVDATFAKFLVAYSTAKEHQEYITWLEKVK 199

Query: 198 QYI 200
           +++
Sbjct: 200 KFV 202

This mitochondrial matrix protein family contains members of the MAM33 family which bind to the globular 'heads' of C1Q. It is thought to be involved in mitochondrial oxidative phosphorylation and in nucleus-mitochondrion interactions. Length = 202

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	209
KOG2536	263	consensus MAM33, mitochondrial matrix glycoprotein	100.0
PF02330	204	MAM33: Mitochondrial glycoprotein; InterPro: IPR00	100.0
KOG4024	266	consensus Complement component 1, Q subcomponent b	99.98
TIGR01881	127	cas_Cmr5 CRISPR-associated protein, Cmr5 family. C	80.99

>KOG2536 consensus MAM33, mitochondrial matrix glycoprotein [Energy production and conversion]

Probab=100.00  E-value=3.1e-47  Score=324.26  Aligned_cols=185  Identities=32%  Similarity=0.561  Sum_probs=152.8

Q ss_pred             chhHHHHHHHHHHHHHHHHhcCCCCC-----CCC-CCCCEEEeCCCCCCceEEEEeeCCeEEEEEEeecC--CCCCCCCC
Q 028429           13 AVVDSILLRSLRDHYEEVAKMTPPPK-----VSP-PSSFTIVKGALDTHGPVLKRMYGSEQISIYVTRLG--NIIRGGDD   84 (209)
Q Consensus        13 ~~~d~~Ll~~L~~Ei~~~~~~~~~~~-----~~~-~~~F~i~~~~gd~~~v~L~R~~~~E~I~V~~~~~~--~~~~~~~e   84 (209)
                      ++.++.|++.+.+||+++.+..++.+     +|. +.||+|+++||. ++|+|+|+|++|+|+|.++|..  ...+.++.
T Consensus        57 ss~t~~~~r~i~~EI~s~~~~~~~~~~~~~~~~~~~~pf~ied~PG~-q~V~L~r~~~GE~i~V~v~v~~~~~~~~~e~~  135 (263)
T KOG2536|consen   57 SSFTQNLLRVILSEIKSEKKHDPPHQVLEEEIPLSKFPFEIEDRPGE-QWVVLTRKFEGETIKVEVDVTQLVTDEPEEDE  135 (263)
T ss_pred             cccccchHHHHHHHHHHhhhcCCchhhhhhccccCCCCcceecCCCc-eEEEEEeecCCceEEEEEeeehhccCCcchhc
Confidence            44578999999999998777666554     444 489999999996 9999999999999999888532  11111110


Q ss_pred             -------CCCC-------CCCCcceeEEEEEEcCCCCceEEEEEeeeCCeEEEeEEEeecCccccCcccCCCCcCCCCCC
Q 028429           85 -------DDDD-------DDGINQLFLHVEMSKPGQKNSLLFLCGLYPDALGIHSVSMRPNLESEGILVVPSQYTGPSFQ  150 (209)
Q Consensus        85 -------~e~d-------~e~~~~~~~~V~ItK~~~~~~L~f~c~~~~~e~~I~~v~~~~~~~~~~~~~~~~~Y~GP~F~  150 (209)
                             ++++       .+...+++|+|+|+|++ |.+|+|.|++++|+|.|++++++++...   ...+.+|.||.|.
T Consensus       136 de~e~~~~~~~~~~~~~~~~~~~~iplvV~vsK~~-~~sLef~cta~pD~i~Idslsv~~~~d~---~~~~l~Y~GP~F~  211 (263)
T KOG2536|consen  136 DETEEEDEDEDQEDDDPLSDNISNIPLVVTVSKGD-GVSLEFLCTAFPDEIVIDSLSVRPPIDA---SEDQLAYEGPSFE  211 (263)
T ss_pred             cccccccccccccccccCCCcceeeEEEEEEecCC-CceEEEEeecCCCceEEeeeEecCCCCc---cchhhhccCCChh
Confidence                   0111       12346799999999965 8999999999999999999999997643   2344799999999


Q ss_pred             CccHHHHHHHHHHHHHcCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC
Q 028429          151 DLDERMRDALHSYIEERGVNESLFPFLQAWLYVKDNRNLMHWFRQVGQYISG  202 (209)
Q Consensus       151 ~LDe~Lq~~~~~YLeeRGId~~la~fl~~y~~~KEq~eYi~WL~~v~~Fv~~  202 (209)
                      +||++||++||.|||+|||+++|+.|||+||.+|+++||++||++||+||+.
T Consensus       212 eLDe~Lqd~fh~fLEeRGI~esl~~FL~~ym~~Kd~rEYl~WlksvK~Fv~~  263 (263)
T KOG2536|consen  212 ELDEELQDSFHRFLEERGIKESLASFLHAYMKNKDSREYLRWLKSVKSFVEQ  263 (263)
T ss_pred             HHhHHHHHHHHHHHHHcCCCHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhcC
Confidence            9999999999999999999999999999999999999999999999999974

>PF02330 MAM33: Mitochondrial glycoprotein; InterPro: IPR003428 This mitochondrial matrix protein family contains members of the MAM33 family which bind to the globular 'heads' of C1Q

Probab=100.00  E-value=6.1e-43  Score=293.21  Aligned_cols=172  Identities=28%  Similarity=0.557  Sum_probs=132.6

Q ss_pred             HHHHHHHHHhcCCC----CCCCCCCCCEEEeCCCCCCceEEEEeeCCeEEEEEEeecCCCC----CCCCCCC---CCC--
Q 028429           23 LRDHYEEVAKMTPP----PKVSPPSSFTIVKGALDTHGPVLKRMYGSEQISIYVTRLGNII----RGGDDDD---DDD--   89 (209)
Q Consensus        23 L~~Ei~~~~~~~~~----~~~~~~~~F~i~~~~gd~~~v~L~R~~~~E~I~V~~~~~~~~~----~~~~e~e---~d~--   89 (209)
                      |++||+++++...+    .+..++.+|+|.+.+|+ +.|+|+|+|++|+|+|.|++.. .+    +++.+.+   +++  
T Consensus         1 L~~EI~~E~~~~~~~~~~~~~l~~~~f~i~d~~g~-~~V~L~r~~~~E~I~V~f~v~~-~~~~~~~~~~~~~~~~e~~~~   78 (204)
T PF02330_consen    1 LKSEIKYEKENYESPDSLKEFLPPSPFEIEDKPGG-SEVTLTREFGGEKIRVTFNVND-SVDPPFDEDEDEEEGEEEEEE   78 (204)
T ss_dssp             HHHHHHHHHHHCT-HHHHCCHHHHTTTCEEEECCT-TEEEEEEEETTEEEEEEEECCC-H--------------------
T ss_pred             ChHHHHHHHHcccccHHHHhhCCCCCCEEEEcCCC-cEEEEEEecCCcEEEEEEECCc-cCCCCCCccccchhccccccc
Confidence            78899877665442    12335678999999885 9999999999999999998543 22    1111100   000  


Q ss_pred             ---------C-----CCcceeEEEEEEcCCCCceEEEEEeeeCCeEEEeEEEeecCccc-c----CcccCCCCcCCCCCC
Q 028429           90 ---------D-----GINQLFLHVEMSKPGQKNSLLFLCGLYPDALGIHSVSMRPNLES-E----GILVVPSQYTGPSFQ  150 (209)
Q Consensus        90 ---------e-----~~~~~~~~V~ItK~~~~~~L~f~c~~~~~e~~I~~v~~~~~~~~-~----~~~~~~~~Y~GP~F~  150 (209)
                               +     ..+.+.++|.|+||+  ++|.|.|++++|+|.|++|+++++... .    +.|  ...|.||.|+
T Consensus        79 ~~~~~~fe~~~~~~~~~~~~~~~v~~~k~~--~~l~f~~~~~~d~~~I~~v~~~~~~~~~~~~~~~e~--~~~y~gp~f~  154 (204)
T PF02330_consen   79 EISEPDFEVEIPKEDEVSFPFFVVVISKPG--DGLEFDCSAQDDEFSIDNVSFYPDGDSTKDSAEAEW--EDAYYGPDFD  154 (204)
T ss_dssp             ------CEEECCCCCCCEEEEEEEEEECTC--EEEEEEEECCTTEEEEEEEEEESSHHHH--SHHHHH--HCSS-ECEGG
T ss_pred             ccccccchhcccccccccceeEEEEEEcCC--CceEEeEeccCceEEEEEEEEecCccccccccchhc--cccccCCccc
Confidence                     0     012457899999984  569999999999999999999986433 1    112  4689999999


Q ss_pred             CccHHHHHHHHHHHHHcCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 028429          151 DLDERMRDALHSYIEERGVNESLFPFLQAWLYVKDNRNLMHWFRQVGQYI  200 (209)
Q Consensus       151 ~LDe~Lq~~~~~YLeeRGId~~la~fl~~y~~~KEq~eYi~WL~~v~~Fv  200 (209)
                      +||++||++|++||++||||.+||+||++||++|||++|++||++|++||
T Consensus       155 ~LDe~Lq~~~~~yLeeRGId~~la~fl~~y~~~kEq~eYi~wL~~l~~Fv  204 (204)
T PF02330_consen  155 ELDENLQDAFMNYLEERGIDEELANFLHDYSTDKEQREYIRWLKNLKKFV  204 (204)
T ss_dssp             GSBHHHHHHHHHHHHHTT-SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             cCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC
Confidence            99999999999999999999999999999999999999999999999997

; GO: 0005759 mitochondrial matrix; PDB: 3QV0_A 1YQF_F 3JV1_A 1P32_A 3RPX_A.

>KOG4024 consensus Complement component 1, Q subcomponent binding protein/mRNA splicing factor SF2, subunit P32 [Defense mechanisms]

Probab=99.98  E-value=1.4e-30  Score=216.80  Aligned_cols=185  Identities=19%  Similarity=0.258  Sum_probs=144.0

Q ss_pred             CCchhHHHHHHHHHHHHHHHHhcCCCCCCC-CCCCCEEEeCCCCCCceEEEEeeCCeEEEEEEeecCCCCCCCCC--C-C
Q 028429           11 GFAVVDSILLRSLRDHYEEVAKMTPPPKVS-PPSSFTIVKGALDTHGPVLKRMYGSEQISIYVTRLGNIIRGGDD--D-D   86 (209)
Q Consensus        11 ~~~~~d~~Ll~~L~~Ei~~~~~~~~~~~~~-~~~~F~i~~~~gd~~~v~L~R~~~~E~I~V~~~~~~~~~~~~~e--~-e   86 (209)
                      -++.++++|.++|.+||+.+.+..+.+..| ...||.+.-+   |.+|.|+|+.++|+|.|+|| ++|++|.+++  + .
T Consensus        65 vht~~~~alv~fl~~Ei~~erk~qkgkt~Pkt~~Gf~v~l~---gaev~Ltkk~~~Eki~V~FN-vNhsvd~~e~~e~eP  140 (266)
T KOG4024|consen   65 VHTELQQALVRFLEAEIQLERKNQKGKTAPKTFAGFQVTLK---GAEVRLTKKNGSEKILVVFN-VNHSVDMDEGFEDEP  140 (266)
T ss_pred             cchHHHHHHHHHHHHHHHHHHHhhcCCccCccccceEEEec---CceeEEeeccCCceEEEEEe-cCCccCcccCCccCc
Confidence            367889999999999999888887777666 6799999986   58999999999999999999 5566543322  1 1


Q ss_pred             CCC-----CCCcceeEEEEEEcCCCCceEEEEEeeeCCe-------EEEeEEEeecCccc-cCcccCCCCcCCCCCCCcc
Q 028429           87 DDD-----DGINQLFLHVEMSKPGQKNSLLFLCGLYPDA-------LGIHSVSMRPNLES-EGILVVPSQYTGPSFQDLD  153 (209)
Q Consensus        87 ~d~-----e~~~~~~~~V~ItK~~~~~~L~f~c~~~~~e-------~~I~~v~~~~~~~~-~~~~~~~~~Y~GP~F~~LD  153 (209)
                      ..+     +..+.++|+|.|.|+  +++|.|+|.+.+++       +.|..+++.+.... ..+|. ...|. -.-+.||
T Consensus       141 sq~~~~~pe~tS~P~F~VeiiKG--~~~L~f~c~~~~~e~QedEy~~~~~~~~~a~f~~~gn~~~~-d~vYa-~~gd~lD  216 (266)
T KOG4024|consen  141 SQAVAPVPEATSMPPFTVEIIKG--DQRLCFHCELVPVEDQEDEYDFRVEEFYVAPFAKNGNEDVP-DEVYA-SSGDYLD  216 (266)
T ss_pred             cccCCCCcccccCCCeEEEEEeC--CeeEEEEeecCCcccCcccccceeeeEEeeecccCCCccCC-cceee-ccCcccC
Confidence            111     123679999999996  58999999995442       34444443332111 11233 35674 3348999


Q ss_pred             HHHHHHHHHHHHHcCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCC
Q 028429          154 ERMRDALHSYIEERGVNESLFPFLQAWLYVKDNRNLMHWFRQVGQYISGK  203 (209)
Q Consensus       154 e~Lq~~~~~YLeeRGId~~la~fl~~y~~~KEq~eYi~WL~~v~~Fv~~~  203 (209)
                      ..|++.|+.||++||||.+||+-|.+|++..||.+||.+|++||+|++++
T Consensus       217 ~~LyDlL~~~LeerG~d~~Fa~~Lv~laTa~EH~~YIglLeklkkF~~~q  266 (266)
T KOG4024|consen  217 PDLYDLLFVYLEERGLDARFAKTLVALATAYEHSQYIGLLEKLKKFISKQ  266 (266)
T ss_pred             HHHHHHHHHHHHHcCccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCC
Confidence            99999999999999999999999999999999999999999999999874

>TIGR01881 cas_Cmr5 CRISPR-associated protein, Cmr5 family

Probab=80.99  E-value=6.1  Score=30.88  Aligned_cols=43  Identities=9%  Similarity=0.285  Sum_probs=30.0

Q ss_pred             HHHHHHHHHHHHcCCChh---HHHHHHH-----HH-HHHHHHHHHHHHHHHH
Q 028429          155 RMRDALHSYIEERGVNES---LFPFLQA-----WL-YVKDNRNLMHWFRQVG  197 (209)
Q Consensus       155 ~Lq~~~~~YLeeRGId~~---la~fl~~-----y~-~~KEq~eYi~WL~~v~  197 (209)
                      -|...+..||.++|+-+.   +...|.+     |+ ...|=-+|..||+++.
T Consensus        70 ~l~~~l~~~L~~~~~~~~~~~l~~~il~~~~~~y~~~T~eaL~~l~WLKRfA  121 (127)
T TIGR01881        70 KYYAHILYWLKERELVDKFKNALKELMEKDYSDSRIATEEALRYLNWLKRLA  121 (127)
T ss_pred             HHHHHHHHHHHHcccccchHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHH
Confidence            478899999999987654   3333322     33 4567778999999865

CRISPR is a term for Clustered, Regularly Interspaced Short Palidromic Repeats. A number of protein families appear only in association with these repeats and are designated Cas (CRISPR-Associated) proteins. This family, represented by TM1791.1 of Thermotoga maritima, is found in both archaeal and bacterial species as part of the 6-gene CRISPR RAMP module.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	209
3qv0_A	227	Crystal Structure Of Saccharomyces Cerevisiae Mam33		2e-08
3jv1_A	182	Crystal Structure Of The Trypanosoma Brucei P22 Pro		2e-04

>pdb|3QV0|A Chain A, Crystal Structure Of Saccharomyces Cerevisiae Mam33 Length = 227

Iteration: 1
 Score = 55.5 bits (132), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 25/76 (32%), Positives = 42/76 (55%)
Query: 125 SVSMRPNLESEGILVVPSQYTGPSFQDLDERMRDALHSYIEERGVNESLFPFLQAWLYVK 184
           SV    N  +E  +     Y GP F +LDE ++++L +Y+E RGVNE L  F+ A+   K
Sbjct: 151 SVDAALNQSAEAEITRELVYHGPPFSNLDEELQESLEAYLESRGVNEELASFISAYSEFK 210
Query: 185 DNRNLMHWFRQVGQYI 200
           +N   + W  ++ ++ 
Sbjct: 211 ENNEYISWLEKMKKFF 226

>pdb|3JV1|A Chain A, Crystal Structure Of The Trypanosoma Brucei P22 Protein Length = 182

Iteration: 1
 Score = 42.0 bits (97), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 16/58 (27%), Positives = 31/58 (53%)
Query: 144 YTGPSFQDLDERMRDALHSYIEERGVNESLFPFLQAWLYVKDNRNLMHWFRQVGQYIS 201
           Y GP   DL++ + D+  SY+  RGVN++L  F+  +    +  +   W   + +++S
Sbjct: 125 YMGPDLADLEDHLVDSFTSYLSARGVNDTLANFIDQFSLWSEQADYEEWLSSINKFVS 182

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	209
3jv1_A	182	P22 protein; MAM33 family, hydrolase; 2.00A {Trypa	8e-39
1yqf_A	203	Hypothetical protein LMAJ011689; structural genomi	7e-37
3qv0_A	227	Mitochondrial acidic protein MAM33; A BOWL like st	1e-33
1p32_A	209	Mitochondrial matrix protein, SF2P32; 2.25A {Homo	3e-26
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	1e-07

>3jv1_A P22 protein; MAM33 family, hydrolase; 2.00A {Trypanosoma brucei} Length = 182

 Score =  131 bits (330), Expect = 8e-39
 Identities = 39/196 (19%), Positives = 80/196 (40%), Gaps = 21/196 (10%)

Query: 13  AVVDSILLRSLRD-HYEEVAKMTPPPKVSPPSSFTIVKGALDTHGPVLKRMYGSEQISIY 71
           AV D  L  +      +E  +   P K   P  +TI +    TH   +++ +G E+I + 
Sbjct: 1   AVSDQRLSEATLRELEDERQRAGLPEKPEIPEGWTIDRKPGVTHF-TMRKSHGDEEIILQ 59

Query: 72  VTRLGNIIRGGDDDDDDDDGINQLFLHVEMSKPGQKNSLLFLCGLYPDALGIHSVSMRPN 131
           +T              +D    ++   +++       +L+F   +      I++V  R +
Sbjct: 60  LT-------------GEDRSNEEITRTLDVLVVNGGKALVFGMSVEDGEFVINNVCFRHD 106

Query: 132 LE------SEGILVVPSQYTGPSFQDLDERMRDALHSYIEERGVNESLFPFLQAWLYVKD 185
            +      +E        Y GP   DL++ + D+  SY+  RGVN++L  F+  +    +
Sbjct: 107 GKLALDTSAEAQFQKSQLYMGPDLADLEDHLVDSFTSYLSARGVNDTLANFIDQFSLWSE 166

Query: 186 NRNLMHWFRQVGQYIS 201
             +   W   + +++S
Sbjct: 167 QADYEEWLSSINKFVS 182

>1yqf_A Hypothetical protein LMAJ011689; structural genomics, PSI, protein structure initiative, STRU genomics of pathogenic protozoa consortium, SGPP; 2.30A {Leishmania major} SCOP: d.25.1.1 Length = 203

 Score =  126 bits (318), Expect = 7e-37
 Identities = 36/209 (17%), Positives = 80/209 (38%), Gaps = 26/209 (12%)

Query: 3   ARRRSTTSGFAVVDSILLRSLRD-HYEEVAKMTPPPKVSPPSSFTIVKGALDTHGP---V 58
           A    T    +  D+ L  + R    EE+ +   P + +PP+ + +V       G     
Sbjct: 11  APTALTVPRRSASDAALADATRRELEEEMGRSDKPEQPTPPAGWQVV----RKPGTCTFD 66

Query: 59  LKRMYGSEQISIYVTRLGNIIRGGDDDDDDDDGINQLFLHVEMSKPGQKNSLLFLCGLYP 118
           L + +  E + +               + D D  N   + V +++     ++     +  
Sbjct: 67  LTKSFEGEDLVVRY-----------STNQDSDKANSHNIFVYITQKN-GQTMQADLSIEE 114

Query: 119 DALGIHSVSMRPNLE------SEGILVVPSQYTGPSFQDLDERMRDALHSYIEERGVNES 172
             L ++++             +E        YTGP   +LD  + + + +Y+E+RGV+E 
Sbjct: 115 GELVLNNIRFYDEAALAKDTGAEAEAKRNELYTGPLVHELDYDLLNCVMTYLEKRGVDEK 174

Query: 173 LFPFLQAWLYVKDNRNLMHWFRQVGQYIS 201
           L  F+  + +  + ++   W   + ++ S
Sbjct: 175 LGEFVVLYSFWAEQQDYEAWLTTMNKFAS 203

>3qv0_A Mitochondrial acidic protein MAM33; A BOWL like structure, mitochondrial oxidative phosphorylati protein binding; 2.10A {Saccharomyces cerevisiae} Length = 227

 Score =  118 bits (298), Expect = 1e-33
 Identities = 40/201 (19%), Positives = 83/201 (41%), Gaps = 24/201 (11%)

Query: 24  RDHYEEVAKMTPPPKVSPPSSFTIVKGALDTHGPVLKRMYGSEQISIYVT--RLGNIIRG 81
           ++   E   +           F++V+        +++R    E + ++    ++ N+   
Sbjct: 26  KETLPESTSLDSFNDFLNKYKFSLVETPGKNEAEIVRRTESGETVHVFFDVAQIANLPYN 85

Query: 82  GDDDD-----------DDDDGINQLFLHVEM-----SKPGQKNSLLFLCGLYPDALGIHS 125
              D+           DD D ++  F +V +     S      S   L  L   +  + S
Sbjct: 86  NAMDENTEQNEDGINEDDFDALSDNFANVNVVISKESASEPAVSFELLMNLQEGSFYVDS 145

Query: 126 VSMRPNLE------SEGILVVPSQYTGPSFQDLDERMRDALHSYIEERGVNESLFPFLQA 179
            +  P+++      +E  +     Y GP F +LDE ++++L +Y+E RGVNE L  F+ A
Sbjct: 146 ATPYPSVDAALNQSAEAEITRELVYHGPPFSNLDEELQESLEAYLESRGVNEELASFISA 205

Query: 180 WLYVKDNRNLMHWFRQVGQYI 200
           +   K+N   + W  ++ ++ 
Sbjct: 206 YSEFKENNEYISWLEKMKKFF 226

>1p32_A Mitochondrial matrix protein, SF2P32; 2.25A {Homo sapiens} SCOP: d.25.1.1 PDB: 3rpx_A Length = 209

 Score = 99.7 bits (248), Expect = 3e-26
 Identities = 33/214 (15%), Positives = 69/214 (32%), Gaps = 34/214 (15%)

Query: 15  VDSILLRSLRDHYE---EVAKMTPPPKVSPPSSFTIVKGALDTHGPVLKRMYGSEQISIY 71
            D   +  L D  +   ++ K    PK+     + +    L+     L R    E+I++ 
Sbjct: 5   GDKAFVDFLSDEIKEERKIQKHKTLPKM--SGGWELE---LNGTEAKLVRKVAGEKITVT 59

Query: 72  VT--RLGNIIRGGDDDDDDDDGINQ--------LFLHVEMSK-PGQKNSLLFLCGL---- 116
                       G+++      + +            VE+ K    K +L+  C      
Sbjct: 60  FNINNSIPPTFDGEEEPSQGQKVEEQEPELTSTPNFVVEVIKNDDGKKALVLDCHYPEDE 119

Query: 117 -------YPDALGIHSVSMRPNLESEGILVVPSQYTGPSFQDLDERMRDALHSYIEERGV 169
                    D   I  VS +   ESE            +   LD  + D L  ++ +RGV
Sbjct: 120 VGQEDEAESDIFSIREVSFQSTGESEW----KDTNYTLNTDSLDWALYDHLMDFLADRGV 175

Query: 170 NESLFPFLQAWLYVKDNRNLMHWFRQVGQYISGK 203
           + +    L       +++  + +   +  ++  +
Sbjct: 176 DNTFADELVELSTALEHQEYITFLEDLKSFVKSQ 209

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 50.6 bits (120), Expect = 1e-07
 Identities = 48/242 (19%), Positives = 85/242 (35%), Gaps = 67/242 (27%)

Query: 8   TTSGFAVVDSILLRSLRDH------YEEVAKMTPPPKVSPPSSFTIVKGALDTHGPV-LK 60
           TT+   +  SI+  S+RD       ++ V       K++     TI++ +L+   P   +
Sbjct: 324 TTNPRRL--SIIAESIRDGLATWDNWKHVNCD----KLT-----TIIESSLNVLEPAEYR 372

Query: 61  RMYGSEQISIYV------TRLGNIIRGGDDDDDDDDGINQLFLHVEMSKPGQKNSLLFLC 114
           +M+  +++S++       T L ++I       D    +N+L           K SL+   
Sbjct: 373 KMF--DRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKL----------HKYSLVE-K 419

Query: 115 GLYPDALGIHSV--SMRPNLESEGIL--VVPSQYTGPSFQDLDERMRDALHSYI------ 164
                 + I S+   ++  LE+E  L   +   Y  P   D D+ +   L  Y       
Sbjct: 420 QPKESTISIPSIYLELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGH 479

Query: 165 ----EERGVNESLFP-------FLQ--------AWLYVKDNRNLMHWFRQVGQYISGKNH 205
                E     +LF        FL+        AW       N +   +    YI   N 
Sbjct: 480 HLKNIEHPERMTLFRMVFLDFRFLEQKIRHDSTAWNASGSILNTLQQLKFYKPYIC-DND 538

Query: 206 AK 207
            K
Sbjct: 539 PK 540

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	209
3jv1_A	182	P22 protein; MAM33 family, hydrolase; 2.00A {Trypa	100.0
1yqf_A	203	Hypothetical protein LMAJ011689; structural genomi	100.0
1p32_A	209	Mitochondrial matrix protein, SF2P32; 2.25A {Homo	100.0
3qv0_A	227	Mitochondrial acidic protein MAM33; A BOWL like st	100.0

>3jv1_A P22 protein; MAM33 family, hydrolase; 2.00A {Trypanosoma brucei} SCOP: d.25.1.0

Probab=100.00  E-value=2.2e-50  Score=332.42  Aligned_cols=175  Identities=22%  Similarity=0.367  Sum_probs=152.7

Q ss_pred             chhHHHHHHHHHHHHHHHHhcCC-CCCCCCCCCCEEEeCCCCCCceEEEEeeCCeEEEEEEeecCCCCCCCCCCCCCCCC
Q 028429           13 AVVDSILLRSLRDHYEEVAKMTP-PPKVSPPSSFTIVKGALDTHGPVLKRMYGSEQISIYVTRLGNIIRGGDDDDDDDDG   91 (209)
Q Consensus        13 ~~~d~~Ll~~L~~Ei~~~~~~~~-~~~~~~~~~F~i~~~~gd~~~v~L~R~~~~E~I~V~~~~~~~~~~~~~e~e~d~e~   91 (209)
                      ++.|++|+++|++||+++++... +..++.|.||+|.++||. ++|+|+|+||+|+|+|+|++.+.        +   +.
T Consensus         1 ~~~d~~L~~~L~~EI~~E~~~~~~~~~p~~~~~f~i~d~pG~-~~v~L~r~~~~E~I~V~f~~~~e--------d---d~   68 (182)
T 3jv1_A            1 AVSDQRLSEATLRELEDERQRAGLPEKPEIPEGWTIDRKPGV-THFTMRKSHGDEEIILQLTGEDR--------S---NE   68 (182)
T ss_dssp             CHHHHHHHHHHHHHHHHHTTSTTCCCCCCCCTTCEEECCTTC-CSCEEEEEETTEEEEEEEEEECS--------S---CS
T ss_pred             CcchHHHHHHHHHHHHHHHhcccccCCCCCCCCCEEEecCCC-cEEEEEEEeCCcEEEEEEecCCc--------c---cc
Confidence            36799999999999998877654 334556789999999985 99999999999999999996421        1   13


Q ss_pred             CcceeEEEEEEcCCCCceEEEEEeeeCCeEEEeEEEeecCccc------cCcccCCCCcCCCCCCCccHHHHHHHHHHHH
Q 028429           92 INQLFLHVEMSKPGQKNSLLFLCGLYPDALGIHSVSMRPNLES------EGILVVPSQYTGPSFQDLDERMRDALHSYIE  165 (209)
Q Consensus        92 ~~~~~~~V~ItK~~~~~~L~f~c~~~~~e~~I~~v~~~~~~~~------~~~~~~~~~Y~GP~F~~LDe~Lq~~~~~YLe  165 (209)
                      .++++|+|+|+| + +++|+|+|++++|+|.|++|+++++...      ++.|.+...|.||+|++||++||++|++||+
T Consensus        69 ~~~~~~~V~I~K-~-~~~L~f~c~~~~~~~~I~~v~~~~~~~~a~~~~~e~~~~~~~~Y~GP~f~~LDe~Lq~~l~~yLe  146 (182)
T 3jv1_A           69 EITRTLDVLVVN-G-GKALVFGMSVEDGEFVINNVCFRHDGKLALDTSAEAQFQKSQLYMGPDLADLEDHLVDSFTSYLS  146 (182)
T ss_dssp             SCCEEEEEEEEE-T-TEEEEEEEEEETTEEEEEEEEEESCHHHHHCCSHHHHHHHTTSCCCCCGGGSCHHHHHHHHHHHH
T ss_pred             ccCccEEEEEEE-C-CcEEEEEEEecCCEEEEEEEEEeccchhhccccccccccccccccCCCccccCHHHHHHHHHHHH
Confidence            468999999999 5 7999999999999999999999986421      1235567899999999999999999999999


Q ss_pred             HcCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 028429          166 ERGVNESLFPFLQAWLYVKDNRNLMHWFRQVGQYIS  201 (209)
Q Consensus       166 eRGId~~la~fl~~y~~~KEq~eYi~WL~~v~~Fv~  201 (209)
                      +||||++||+||++||++|||+||++||++|++||+
T Consensus       147 eRGI~~~la~fl~~y~~~KEq~EYi~WL~~lk~Fvs  182 (182)
T 3jv1_A          147 ARGVNDTLANFIDQFSLWSEQADYEEWLSSINKFVS  182 (182)
T ss_dssp             TTTCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred             HhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC
Confidence            999999999999999999999999999999999996

>1yqf_A Hypothetical protein LMAJ011689; structural genomics, PSI, protein structure initiative, STRU genomics of pathogenic protozoa consortium, SGPP; 2.30A {Leishmania major} SCOP: d.25.1.1

Probab=100.00  E-value=3.5e-50  Score=336.26  Aligned_cols=187  Identities=17%  Similarity=0.289  Sum_probs=150.5

Q ss_pred             ccccCCCCCCCchhHHHHHHHHHHHHHHHHhcCC-CCCCCCCCCCEEEeCCCCCCceEEEEeeCCeEEEEEEeecCCCCC
Q 028429            2 IARRRSTTSGFAVVDSILLRSLRDHYEEVAKMTP-PPKVSPPSSFTIVKGALDTHGPVLKRMYGSEQISIYVTRLGNIIR   80 (209)
Q Consensus         2 ~~~~~~~~~~~~~~d~~Ll~~L~~Ei~~~~~~~~-~~~~~~~~~F~i~~~~gd~~~v~L~R~~~~E~I~V~~~~~~~~~~   80 (209)
                      -|+-=.+...+++.|+.|+++|++||+++.+... |+.+++|.||+|.++||. ++|+|+|+||+|+|+|+|++.+.. .
T Consensus        10 ~~~~~~~~~~~~~~d~~L~~~L~~EI~~E~~~~~~~~~~~~p~~F~i~d~pG~-~~v~L~R~~~~E~I~V~f~~~~~~-~   87 (203)
T 1yqf_A           10 SAPTALTVPRRSASDAALADATRRELEEEMGRSDKPEQPTPPAGWQVVRKPGT-CTFDLTKSFEGEDLVVRYSTNQDS-D   87 (203)
T ss_dssp             ------------CHHHHHHHHHHHHHHHHHTCSSCCCCCCCCTTCEEEECTTS-SEEEEEEEETTEEEEEEEESCCCS-S
T ss_pred             ccccceeccccCcchHHHHHHHHHHHHHHHhcccCCCCCCCCCCcEEEecCCC-cEEEEEEecCCeEEEEEEEcCCCC-C
Confidence            3444445666788999999999999998777543 333445679999999985 899999999999999999965322 1


Q ss_pred             CCCCCCCCCCCCcceeEEEEEEcCCCCceEEEEEeeeCCeEEEeEEEeecCccc------cCcccCCCCcCCCCCCCccH
Q 028429           81 GGDDDDDDDDGINQLFLHVEMSKPGQKNSLLFLCGLYPDALGIHSVSMRPNLES------EGILVVPSQYTGPSFQDLDE  154 (209)
Q Consensus        81 ~~~e~e~d~e~~~~~~~~V~ItK~~~~~~L~f~c~~~~~e~~I~~v~~~~~~~~------~~~~~~~~~Y~GP~F~~LDe  154 (209)
                        +     ++ + + +|+|+|+|++ +++|+|.|++++|+|.|++|+++++...      ++.|.+...|.||.|++||+
T Consensus        88 --~-----de-~-s-~~~V~I~K~~-~~~L~f~C~~~~~~~~I~~v~~~~~~~~~~~~~~e~~~~~~~~Y~GP~F~~LDe  156 (203)
T 1yqf_A           88 --K-----AN-S-H-NIFVYITQKN-GQTMQADLSIEEGELVLNNIRFYDEAALAKDTGAEAEAKRNELYTGPLVHELDY  156 (203)
T ss_dssp             --C-----SS-C-E-EEEEEEECTT-SCEEEEEEEEETTEEEEEEEEEESSHHHHHCCSHHHHHHHHHSCCCCCGGGSBH
T ss_pred             --C-----CC-c-c-eEEEEEEeCC-CCEEEEEEEecCCEEEEEEEEEeccccccccccccccccccccccCCCcccCCH
Confidence              1     12 2 3 9999999987 7999999999999999999999986421      12344567899999999999


Q ss_pred             HHHHHHHHHHHHcCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 028429          155 RMRDALHSYIEERGVNESLFPFLQAWLYVKDNRNLMHWFRQVGQYIS  201 (209)
Q Consensus       155 ~Lq~~~~~YLeeRGId~~la~fl~~y~~~KEq~eYi~WL~~v~~Fv~  201 (209)
                      +||++|++||++||||++||+||++||++|||+||++||++|++||+
T Consensus       157 ~Lq~~l~~YLeeRGI~~~la~fl~~y~~~KE~~EYi~WL~~lk~Fv~  203 (203)
T 1yqf_A          157 DLLNCVMTYLEKRGVDEKLGEFVVLYSFWAEQQDYEAWLTTMNKFAS  203 (203)
T ss_dssp             HHHHHHHHHHHHTTCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence            99999999999999999999999999999999999999999999995

>1p32_A Mitochondrial matrix protein, SF2P32; 2.25A {Homo sapiens} SCOP: d.25.1.1 PDB: 3rpx_A

Probab=100.00  E-value=2.2e-47  Score=320.50  Aligned_cols=184  Identities=17%  Similarity=0.244  Sum_probs=149.6

Q ss_pred             CchhHHHHHHHHHHHHHHHHhcCCCCCC-CCCCCCEEEeCCCCCCceEEEEeeCCeEEEEEEeecCCCCCCCC--CCC--
Q 028429           12 FAVVDSILLRSLRDHYEEVAKMTPPPKV-SPPSSFTIVKGALDTHGPVLKRMYGSEQISIYVTRLGNIIRGGD--DDD--   86 (209)
Q Consensus        12 ~~~~d~~Ll~~L~~Ei~~~~~~~~~~~~-~~~~~F~i~~~~gd~~~v~L~R~~~~E~I~V~~~~~~~~~~~~~--e~e--   86 (209)
                      +++.+++|+++|++||+++++..+++.+ ..+.||+|.+.   |++|+|+|+|++|+|+|+|++. +++|...  +++  
T Consensus         2 ~~~~d~~L~~~L~~EI~~E~~~~~~~~~p~~~~~F~v~~~---g~~v~L~r~~~~E~I~V~f~v~-~~~~~~~~~~~e~~   77 (209)
T 1p32_A            2 HTDGDKAFVDFLSDEIKEERKIQKHKTLPKMSGGWELELN---GTEAKLVRKVAGEKITVTFNIN-NSIPPTFDGEEEPS   77 (209)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHHHSTTSCCCCCTTCCEEEEE---TTEEEEEEEETTEEEEEEEECT-TCCC----------
T ss_pred             CchHHHHHHHHHHHHHHHHHhcccccCCCCCCCCcEEEEC---CCEEEEEEecCCcEEEEEEEcc-CCCCcccccccccc
Confidence            5788999999999999987775544433 35689999984   4899999999999999999965 3344211  111  


Q ss_pred             -------CCCCCCcceeEEEEEEcC-CCCceEEEEEeeeCCe-----------EEEeEEEeecCccccCcccCCCCcCCC
Q 028429           87 -------DDDDGINQLFLHVEMSKP-GQKNSLLFLCGLYPDA-----------LGIHSVSMRPNLESEGILVVPSQYTGP  147 (209)
Q Consensus        87 -------~d~e~~~~~~~~V~ItK~-~~~~~L~f~c~~~~~e-----------~~I~~v~~~~~~~~~~~~~~~~~Y~GP  147 (209)
                             ++.+..++++|+|+|+|| +.+++|.|.|++++++           |.|++|+++++..  +.| ....|.| 
T Consensus        78 ~~~~~~ee~~~~~~~~~~~V~I~K~~~~~~~L~f~C~~~~~e~~~~~~~~~~~~~I~~v~~~~~~e--~~~-~~~~Y~g-  153 (209)
T 1p32_A           78 QGQKVEEQEPELTSTPNFVVEVIKNDDGKKALVLDCHYPEDEVGQEDEAESDIFSIREVSFQSTGE--SEW-KDTNYTL-  153 (209)
T ss_dssp             -----------CCCCCCEEEEEEEGGGTTEEEEEEEECCCCC------TTCCSCEEEEEEEEETTC--SSC-CTTSCEE-
T ss_pred             cccccccccccccccCcEEEEEEECCCCCCeEEEEEEecCcccccccccCCceEEEEEEEEecCcc--ccc-ccccccc-
Confidence                   122345788999999998 3478999999998876           9999999997632  123 3468999 


Q ss_pred             CCCCccHHHHHHHHHHHHHcCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCC
Q 028429          148 SFQDLDERMRDALHSYIEERGVNESLFPFLQAWLYVKDNRNLMHWFRQVGQYISGK  203 (209)
Q Consensus       148 ~F~~LDe~Lq~~~~~YLeeRGId~~la~fl~~y~~~KEq~eYi~WL~~v~~Fv~~~  203 (209)
                      .|.+||++||++|++||++||||++||+||++||++|||+||++||++|++||+++
T Consensus       154 ~f~~LDe~Lq~~l~~yLeeRGI~~~la~fl~~y~~~KE~~eYi~WL~~lk~Fv~~~  209 (209)
T 1p32_A          154 NTDSLDWALYDHLMDFLADRGVDNTFADELVELSTALEHQEYITFLEDLKSFVKSQ  209 (209)
T ss_dssp             ESTTCCHHHHHHHHHHHHTTTCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_pred             ccccCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence            89999999999999999999999999999999999999999999999999999863

>3qv0_A Mitochondrial acidic protein MAM33; A BOWL like structure, mitochondrial oxidative phosphorylati protein binding; 2.10A {Saccharomyces cerevisiae}

Probab=100.00  E-value=2.3e-44  Score=304.55  Aligned_cols=185  Identities=22%  Similarity=0.405  Sum_probs=141.1

Q ss_pred             hHHHHHHHHHHHHHHHHhcCCCCCCC-------CCCCCEEEeCCCCCCce-EEEEeeCCeEEEEEEeec--CCCCCCCC-
Q 028429           15 VDSILLRSLRDHYEEVAKMTPPPKVS-------PPSSFTIVKGALDTHGP-VLKRMYGSEQISIYVTRL--GNIIRGGD-   83 (209)
Q Consensus        15 ~d~~Ll~~L~~Ei~~~~~~~~~~~~~-------~~~~F~i~~~~gd~~~v-~L~R~~~~E~I~V~~~~~--~~~~~~~~-   83 (209)
                      -...|+.+|++||+.+++.......|       ..+||+|.+.||. +.| .|+|+||+|+|+|.|++.  .++ |.++ 
T Consensus        10 ~~~~l~~~L~~Ei~~E~~~~~~e~~p~~~~~Fl~~~~f~i~d~~G~-~~V~llkr~~g~EkI~V~F~i~d~~~~-p~e~~   87 (227)
T 3qv0_A           10 ETQRVGDILQSELKIEKETLPESTSLDSFNDFLNKYKFSLVETPGK-NEAEIVRRTESGETVHVFFDVAQIANL-PYNNA   87 (227)
T ss_dssp             CHHHHHHHHHHHHHHHHC------CHHHHHHHHHHTTCEEECCTTC-SEEEEEEECTTSCEEEEEEEHHHHC--------
T ss_pred             HHHHHHHHHHHHHHHHHhccccccCchHHHHHHhcCCcEEEecCCC-ceEEEEEeecCCcEEEEEEEccccccC-Ccccc
Confidence            35689999999999876543332222       3379999999985 888 889999999999999852  232 2110 


Q ss_pred             --C---------CCCCCCCC--cceeEEEEEEcCCCC-ceEEEEEe--eeCCeEEEeEEEeecCccc------cCcccCC
Q 028429           84 --D---------DDDDDDGI--NQLFLHVEMSKPGQK-NSLLFLCG--LYPDALGIHSVSMRPNLES------EGILVVP  141 (209)
Q Consensus        84 --e---------~e~d~e~~--~~~~~~V~ItK~~~~-~~L~f~c~--~~~~e~~I~~v~~~~~~~~------~~~~~~~  141 (209)
                        +         .+++.+..  ..++|+|+|+||+++ ++|.|+|+  +++|+|.|++|+|+++...      ++.|.+.
T Consensus        88 ~~e~~~~~~~~~~eee~~~~~~~~~~~~V~ItK~~~~~~aL~~e~~~~~~eg~f~Id~V~~~~d~~~a~~~s~e~~~~r~  167 (227)
T 3qv0_A           88 MDENTEQNEDGINEDDFDALSDNFANVNVVISKESASEPAVSFELLMNLQEGSFYVDSATPYPSVDAALNQSAEAEITRE  167 (227)
T ss_dssp             -----------------------CEEEEEEEEC---CCCEEEEEEEEETTTTEEEEEEEEEESSHHHHHCCSHHHHHHHH
T ss_pred             cccccccccccccccchhcccCCcceEEEEEEeCCCCCceEEEEEEeecCCCcEEEEEEEEecchHhhhccccccccccc
Confidence              0         01111111  358999999999643 89999999  8999999999999986421      2346677


Q ss_pred             CCcCCCCCCCccHHHHHHHHHHHHHcCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 028429          142 SQYTGPSFQDLDERMRDALHSYIEERGVNESLFPFLQAWLYVKDNRNLMHWFRQVGQYIS  201 (209)
Q Consensus       142 ~~Y~GP~F~~LDe~Lq~~~~~YLeeRGId~~la~fl~~y~~~KEq~eYi~WL~~v~~Fv~  201 (209)
                      ..|.||.|++||++||++|++||++||||++||+||++||.+|||+||++||++|++||+
T Consensus       168 ~~Y~GP~f~~LDe~Lq~~l~~yLeeRGI~~~la~fl~~y~~~KEq~EYi~WL~~lk~Fv~  227 (227)
T 3qv0_A          168 LVYHGPPFSNLDEELQESLEAYLESRGVNEELASFISAYSEFKENNEYISWLEKMKKFFH  227 (227)
T ss_dssp             HSCCCSCGGGSCHHHHHHHHHHHHHTTCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred             cccCCCCccccCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence            899999999999999999999999999999999999999999999999999999999984

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	209
d1yqfa1	182	d.25.1.1 (A:14-195) Hypothetical protein Lmaj01168	6e-39
d1p32a_	209	d.25.1.1 (A:) Acidic mitochondrial matrix protein	3e-27

>d1yqfa1 d.25.1.1 (A:14-195) Hypothetical protein Lmaj011689 {Leishmania major [TaxId: 5664]} Length = 182

class: Alpha and beta proteins (a+b)
fold: Mitochondrial glycoprotein MAM33-like
superfamily: Mitochondrial glycoprotein MAM33-like
family: Mitochondrial glycoprotein MAM33-like
domain: Hypothetical protein Lmaj011689
species: Leishmania major [TaxId: 5664]

 Score =  130 bits (327), Expect = 6e-39
 Identities = 34/194 (17%), Positives = 80/194 (41%), Gaps = 20/194 (10%)

Query: 15  VDSILLRSLRD-HYEEVAKMTPPPKVSPPSSFTIVKGALDTHGPVLKRMYGSEQISIYVT 73
            D+ L  + R    EE+ +   P + +PP+ + +V+    T    L + +  E + +  +
Sbjct: 2   SDAALADATRRELEEEMGRSDKPEQPTPPAGWQVVRKP-GTCTFDLTKSFEGEDLVVRYS 60

Query: 74  RLGNIIRGGDDDDDDDDGINQLFLHVEMSKPGQKNSLLFLCGLYPDALGIHSVSMRPNLE 133
                    + D D  +  N   + V +++   + ++     +    L ++++       
Sbjct: 61  --------TNQDSDKANSHN---IFVYITQKNGQ-TMQADLSIEEGELVLNNIRFYDEAA 108

Query: 134 S------EGILVVPSQYTGPSFQDLDERMRDALHSYIEERGVNESLFPFLQAWLYVKDNR 187
                  E        YTGP   +LD  + + + +Y+E+RGV+E L  F+  + +  + +
Sbjct: 109 LAKDTGAEAEAKRNELYTGPLVHELDYDLLNCVMTYLEKRGVDEKLGEFVVLYSFWAEQQ 168

Query: 188 NLMHWFRQVGQYIS 201
           +   W   + ++ S
Sbjct: 169 DYEAWLTTMNKFAS 182

>d1p32a_ d.25.1.1 (A:) Acidic mitochondrial matrix protein p32 {Human (Homo sapiens) [TaxId: 9606]} Length = 209

class: Alpha and beta proteins (a+b)
fold: Mitochondrial glycoprotein MAM33-like
superfamily: Mitochondrial glycoprotein MAM33-like
family: Mitochondrial glycoprotein MAM33-like
domain: Acidic mitochondrial matrix protein p32
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  100 bits (251), Expect = 3e-27
 Identities = 32/215 (14%), Positives = 68/215 (31%), Gaps = 36/215 (16%)

Query: 15  VDSILLRSLRD---HYEEVAKMTPPPKVSPPSSFTIVKGALDTHGPV-LKRMYGSEQISI 70
            D   +  L D      ++ K    PK+     + +            L R    E+I++
Sbjct: 5   GDKAFVDFLSDEIKEERKIQKHKTLPKM--SGGWELE----LNGTEAKLVRKVAGEKITV 58

Query: 71  YVTRLGNI----------IRGGDDDDDDDDGINQLFLHVEMSKPGQKN-SLLFLCGL--- 116
                 +I           +G   ++ + +  +     VE+ K      +L+  C     
Sbjct: 59  TFNINNSIPPTFDGEEEPSQGQKVEEQEPELTSTPNFVVEVIKNDDGKKALVLDCHYPED 118

Query: 117 --------YPDALGIHSVSMRPNLESEGILVVPSQYTGPSFQDLDERMRDALHSYIEERG 168
                     D   I  VS +   ESE            +   LD  + D L  ++ +RG
Sbjct: 119 EVGQEDEAESDIFSIREVSFQSTGESEW----KDTNYTLNTDSLDWALYDHLMDFLADRG 174

Query: 169 VNESLFPFLQAWLYVKDNRNLMHWFRQVGQYISGK 203
           V+ +    L       +++  + +   +  ++  +
Sbjct: 175 VDNTFADELVELSTALEHQEYITFLEDLKSFVKSQ 209

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	209
d1yqfa1	182	Hypothetical protein Lmaj011689 {Leishmania major	100.0
d1p32a_	209	Acidic mitochondrial matrix protein p32 {Human (Ho	100.0

>d1yqfa1 d.25.1.1 (A:14-195) Hypothetical protein Lmaj011689 {Leishmania major [TaxId: 5664]}

class: Alpha and beta proteins (a+b)
fold: Mitochondrial glycoprotein MAM33-like
superfamily: Mitochondrial glycoprotein MAM33-like
family: Mitochondrial glycoprotein MAM33-like
domain: Hypothetical protein Lmaj011689
species: Leishmania major [TaxId: 5664]

Probab=100.00  E-value=6.6e-50  Score=327.40  Aligned_cols=175  Identities=18%  Similarity=0.311  Sum_probs=150.4

Q ss_pred             hhHHHHHHHHHHHHHHHHhcCCC-CCCCCCCCCEEEeCCCCCCceEEEEeeCCeEEEEEEeecCCCCCCCCCCCCCCCCC
Q 028429           14 VVDSILLRSLRDHYEEVAKMTPP-PKVSPPSSFTIVKGALDTHGPVLKRMYGSEQISIYVTRLGNIIRGGDDDDDDDDGI   92 (209)
Q Consensus        14 ~~d~~Ll~~L~~Ei~~~~~~~~~-~~~~~~~~F~i~~~~gd~~~v~L~R~~~~E~I~V~~~~~~~~~~~~~e~e~d~e~~   92 (209)
                      +.|+.|+++|++||+++.....+ ++|++|.||+|.++||. ++|+|+|+|++|+|+|+|++...           .+..
T Consensus         1 asd~~L~~~l~~Ei~~E~~~~~~~~~p~~~~gf~i~d~~g~-~~v~L~r~~~~E~I~V~~~~~~~-----------~~~~   68 (182)
T d1yqfa1           1 ASDAALADATRRELEEEMGRSDKPEQPTPPAGWQVVRKPGT-CTFDLTKSFEGEDLVVRYSTNQD-----------SDKA   68 (182)
T ss_dssp             CHHHHHHHHHHHHHHHHHTCSSCCCCCCCCTTCEEEECTTS-SEEEEEEEETTEEEEEEEESCCC-----------SSCS
T ss_pred             CchHHHHHHHHHHHHHHHhcccCCCCCCCCCCCEEEEcCCc-eEEEEEEecCCeEEEEEEECCCC-----------CCcc
Confidence            46899999999999987765544 44567899999999985 89999999999999999985321           1123


Q ss_pred             cceeEEEEEEcCCCCceEEEEEeeeCCeEEEeEEEeecCccc------cCcccCCCCcCCCCCCCccHHHHHHHHHHHHH
Q 028429           93 NQLFLHVEMSKPGQKNSLLFLCGLYPDALGIHSVSMRPNLES------EGILVVPSQYTGPSFQDLDERMRDALHSYIEE  166 (209)
Q Consensus        93 ~~~~~~V~ItK~~~~~~L~f~c~~~~~e~~I~~v~~~~~~~~------~~~~~~~~~Y~GP~F~~LDe~Lq~~~~~YLee  166 (209)
                      ..++|+|+|+|++ +++|.|.|++++|++.|++|+++++...      .+.+.+...|.||.|++||++||++|++||++
T Consensus        69 ~~~~~~V~i~K~~-~~~L~f~c~~~~~~~~i~~v~~~~~~~~~~~~~~~~~~~~~~~Y~GP~f~~LDe~Lq~~l~~yLee  147 (182)
T d1yqfa1          69 NSHNIFVYITQKN-GQTMQADLSIEEGELVLNNIRFYDEAALAKDTGAEAEAKRNELYTGPLVHELDYDLLNCVMTYLEK  147 (182)
T ss_dssp             SCEEEEEEEECTT-SCEEEEEEEEETTEEEEEEEEEESSHHHHHCCSHHHHHHHHHSCCCCCGGGSBHHHHHHHHHHHHH
T ss_pred             CCCCeEEEEEECC-CCEEEEEEEecCCceEEEEEEeeCchhhccccccccccccccccCCCCccccCHHHHHHHHHHHHH
Confidence            4688999999987 7899999999999999999999986421      12234556799999999999999999999999


Q ss_pred             cCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 028429          167 RGVNESLFPFLQAWLYVKDNRNLMHWFRQVGQYIS  201 (209)
Q Consensus       167 RGId~~la~fl~~y~~~KEq~eYi~WL~~v~~Fv~  201 (209)
                      ||||++||+||++||++|||++|++||++|++||+
T Consensus       148 RGId~~la~fl~~~~~~kE~~eYi~WL~~l~~Fvs  182 (182)
T d1yqfa1         148 RGVDEKLGEFVVLYSFWAEQQDYEAWLTTMNKFAS  182 (182)
T ss_dssp             TTCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred             hCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC
Confidence            99999999999999999999999999999999996

>d1p32a_ d.25.1.1 (A:) Acidic mitochondrial matrix protein p32 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Mitochondrial glycoprotein MAM33-like
superfamily: Mitochondrial glycoprotein MAM33-like
family: Mitochondrial glycoprotein MAM33-like
domain: Acidic mitochondrial matrix protein p32
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=3.4e-46  Score=311.10  Aligned_cols=185  Identities=16%  Similarity=0.222  Sum_probs=144.5

Q ss_pred             CchhHHHHHHHHHHHHHHHHhcCCCCCCC-CCCCCEEEeCCCCCCceEEEEeeCCeEEEEEEeecCCCCCCC--C-C---
Q 028429           12 FAVVDSILLRSLRDHYEEVAKMTPPPKVS-PPSSFTIVKGALDTHGPVLKRMYGSEQISIYVTRLGNIIRGG--D-D---   84 (209)
Q Consensus        12 ~~~~d~~Ll~~L~~Ei~~~~~~~~~~~~~-~~~~F~i~~~~gd~~~v~L~R~~~~E~I~V~~~~~~~~~~~~--~-e---   84 (209)
                      ++..|++|+++|++||+++++...+..+| .+.+|+|++++   ..|+|+|+||+|+|+|+|++.....++.  + +   
T Consensus         2 ~t~~d~~L~~~L~~EI~~E~~~~~~~~~p~~~~~F~v~~~~---~ev~L~R~~~~E~I~V~f~v~~~~~~~~~~~~~~~~   78 (209)
T d1p32a_           2 HTDGDKAFVDFLSDEIKEERKIQKHKTLPKMSGGWELELNG---TEAKLVRKVAGEKITVTFNINNSIPPTFDGEEEPSQ   78 (209)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHHHSTTSCCCCCTTCCEEEEET---TEEEEEEEETTEEEEEEEECTTCCC-----------
T ss_pred             CchhHHHHHHHHHHHHHHHHhcccccCCCCCCCCcEEEecC---CEEEEEEecCCceEEEEEEcCCCCCCCcCccccccc
Confidence            57899999999999999877655554444 46899999873   4799999999999999999643221111  1 0   


Q ss_pred             -C---CCCCCCCcceeEEEEEEcCC-CCceEEEEEeee-----------CCeEEEeEEEeecCccccCcccCCCCcCCCC
Q 028429           85 -D---DDDDDGINQLFLHVEMSKPG-QKNSLLFLCGLY-----------PDALGIHSVSMRPNLESEGILVVPSQYTGPS  148 (209)
Q Consensus        85 -~---e~d~e~~~~~~~~V~ItK~~-~~~~L~f~c~~~-----------~~e~~I~~v~~~~~~~~~~~~~~~~~Y~GP~  148 (209)
                       +   +++.+...+++|+|+|+|++ ++++|.|.|++.           ++.|.|++|+++.....    .....|.||.
T Consensus        79 ~~~~~~~~~~~~~~~~~~V~Itk~~~~~~~L~f~c~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~----~~~~~~~gp~  154 (209)
T d1p32a_          79 GQKVEEQEPELTSTPNFVVEVIKNDDGKKALVLDCHYPEDEVGQEDEAESDIFSIREVSFQSTGES----EWKDTNYTLN  154 (209)
T ss_dssp             ----------CCCCCCEEEEEEEGGGTTEEEEEEEECCCCC------TTCCSCEEEEEEEEETTCS----SCCTTSCEEE
T ss_pred             cccccccccccccCCceEEEEEecCCCCceEEEEeecccccccccccccccceEEeEEeeeccccc----cccccccCCC
Confidence             0   11122346789999999964 368999999854           44577888887764321    2334688999


Q ss_pred             CCCccHHHHHHHHHHHHHcCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCC
Q 028429          149 FQDLDERMRDALHSYIEERGVNESLFPFLQAWLYVKDNRNLMHWFRQVGQYISGK  203 (209)
Q Consensus       149 F~~LDe~Lq~~~~~YLeeRGId~~la~fl~~y~~~KEq~eYi~WL~~v~~Fv~~~  203 (209)
                      |.+||++||++|++||++||||++||.||++||++|||+||++||++||+||+.+
T Consensus       155 f~~LDe~Lq~~~~~YLeeRGI~~~la~fi~~y~~~KEq~EYi~WL~~lk~Fv~~~  209 (209)
T d1p32a_         155 TDSLDWALYDHLMDFLADRGVDNTFADELVELSTALEHQEYITFLEDLKSFVKSQ  209 (209)
T ss_dssp             STTCCHHHHHHHHHHHHTTTCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_pred             hhhcCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence            9999999999999999999999999999999999999999999999999999875