Citrus Sinensis ID: 028441

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------21
Protein Sequence
MEVKLWNDKREREMYENFAELYAIIKATEKLEKAYVRDIISSSEYETECQKLIAHFKTLSSTLKDIVPSIERFADTYKMDCPAALNRLVTSGVPATVEHRAAAVASTTTSAAIVAECVQNFITAMDSLKLNMVAVDQVHPLLSDLLGSLNKLTILPPDFEGKTKMKDWISRLSKMGAADELTEQQSRQLHFDLESSYNSFMAALPNAGT
Secondary Structure (PSIPRED)
ccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHccccHHHHHHHHHHcccccEEcccccccccccccHHHHHHccccccccccccccccccccccccHHHHHHHHHHcccccccccccHHHHHHHHHHccccccccccHHHHHHHHHHHHHHHHHHHHHcccccc
Secondary Structure Prediction (SSPRO)
ccEEEcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHccccHHHHHHHHHccccEEEEccccccccccccHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHccccccccccHHHHHHHHHHHHHccccHHccHHHHHHHHHHHHHHHHHHHHHHHcccc
Coil and Loop (DISEMBL)
mevklwndKREREMYENFAELYAIIKATEKLEKAYVRDIISSSEYETECQKLIAHFKTLSSTLKDIVPSIERFADTYKMDCPAALNRLvtsgvpatvEHRAAAVASTTTSAAIVAECVQNFITAMDSLKLNMVAVDQVHPLLSDLLGSlnkltilppdfegktkMKDWISRLSKMGAADELTEQQSRQLHFDLESSYNSFMAALPNAGT
Flexible Loop (DISEMBL)
mevklwndkrerEMYENFAELYAIIKATEKLEKAYVRDIISSSEYETECQKLIAHFktlsstlkDIVPSIERFADTYKMDCPAALNRLVTSGVPATVEHRAAAVASTTTSAAIVAECVQNFITAMDSLKLNMVAVDQVHPLLSDLLGSLNKLTilppdfegktKMKDWISRLSKMGAADELTEQQSRQLHFDLESSYNSFMAALPNAGT
Low Complexity Region (SEG)
MEVKLWNDKREREMYENFAELYAIIKATEKLEKAYVRDIISSSEYETECQKLIAHFKTLSSTLKDIVPSIERFADTYKMDCPAALNRLVTSGVPATVEHRaaavastttsaaivaECVQNFITAMDSLKLNMVAVDQVHPllsdllgslnklTILPPDFEGKTKMKDWISRLSKMGAADELTEQQSRQLHFDLESSYNSFMAALPNAGT
Disordered region (IsUnstruct)
************EMYENFAELYAIIKATEKLEKAYVRDIISSSEYETECQKLIAHFKTLSSTLKDIVPSIERFADTYKMDCPAALNRLVTSGVPATVEHRAAAVASTTTSAAIVAECVQNFITAMDSLKLNMVAVDQVHPLLSDLLGSLNKLTILPPDFEGKTKMKDWI****************************************
Disordered Region (DISOPRED)
*EVKLW*DKREREMYENFAELYAIIKATEKLEKAYVRDIISSSEYETECQKLIAHFKTLSSTLKDIVPSIERFADTYKMDCPAALNRLVTSGVP*******************VAECVQNFITAMDSLKLNMVAVDQVHPLLSDLLGSLNKLTILPPDFEGKTKMKDWISRLS************SRQLHFDLESSYNSFM*ALP****
Disordered Region (DISEMBL)
MEVKLWNDKREREMYENFAELYAIIKATEKLEKAYVRDIISSSEYETECQKLIAHFKTLSSTLKDIVPSIERFADTYKMDCPAALNRLVTSGVPATVEHRAAAVASTTTSAAIVAECVQNFITAMDSLKLNMVAVDQVHPLLSDLLGSLNKLTILPPDFEGKTKMKDWISRLSKMGAADELTEQQSRQLHFDLESSYNSFMAALPNAGT
Disordered Region (DISPRO)
*EVKLWNDKREREMYENFAELYAIIKATEKLEKAYVRDIISSSEYETECQKLIAHFKTLSSTLKDIVPSIERFADTYKMDCPAALNRLVTSGVPATVEHRAA*V**TTTSAAIVAECVQNFITAMDSLKLNMVAVDQVHPLLSDLLGSLNKLTILPPDFEGKTKMKDWISRLSKMGAADELTEQQSRQLHFDLESSYNSFMAALPN***
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MEVKLWNDKREREMYENFAELYAIIKATEKLEKAYVRDIISSSEYETECQKLIAHFKTLSSTLKDIVPSIERFADTYKMDCPAALNRLVTSGVPATVEHRAAAVASTTTSAAIVAECVQNFITAMDSLKLNMVAVDQVHPLLSDLLGSLNKLTILPPDFEGKTKMKDWISRLSKMGAADELTEQQSRQLHFDLESSYNSFMAALPNAGT
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	209	2.2.26 [Sep-21-2011]
Q9S9T7	210	Vacuolar protein sorting-	yes	no	0.995	0.990	0.875	1e-107
O65421	209	Vacuolar protein sorting-	no	no	1.0	1.0	0.861	1e-99
Q54NF1	288	Vacuolar protein sorting-	yes	no	0.971	0.704	0.546	1e-58
Q9V359	210	Vacuolar protein sorting-	yes	no	0.918	0.914	0.41	3e-40
Q9UK41	221	Vacuolar protein sorting-	yes	no	0.918	0.868	0.39	7e-40
Q3T178	221	Vacuolar protein sorting-	yes	no	0.918	0.868	0.38	3e-39
Q9D1C8	221	Vacuolar protein sorting-	yes	no	0.918	0.868	0.38	4e-39
B5DEN9	228	Vacuolar protein sorting-	yes	no	0.918	0.842	0.38	4e-39
A8XWB7	209	Vacuolar protein sorting-	N/A	no	0.933	0.933	0.418	1e-38
Q9NA26	210	Vacuolar protein sorting-	yes	no	0.933	0.928	0.413	3e-37

>sp|Q9S9T7|VP282_ARATH Vacuolar protein sorting-associated protein 28 homolog 2 OS=Arabidopsis thaliana GN=VPS28-2 PE=1 SV=2

 Score =  387 bits (995), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 182/208 (87%), Positives = 197/208 (94%)

Query: 1   MEVKLWNDKREREMYENFAELYAIIKATEKLEKAYVRDIISSSEYETECQKLIAHFKTLS 60
           MEVKLWNDKREREMYENFAEL+AIIKATEKLEKAY+RD+I+ SEYE+ECQKLI HFKTLS
Sbjct: 2   MEVKLWNDKREREMYENFAELFAIIKATEKLEKAYIRDLINPSEYESECQKLIVHFKTLS 61

Query: 61  STLKDIVPSIERFADTYKMDCPAALNRLVTSGVPATVEHRAAAVASTTTSAAIVAECVQN 120
           +TLKD VP+IERFADTYKMDCPAAL RLVTSG+PATVEHRA   AST+ SA+IVAECVQN
Sbjct: 62  ATLKDTVPNIERFADTYKMDCPAALYRLVTSGLPATVEHRATVAASTSNSASIVAECVQN 121

Query: 121 FITAMDSLKLNMVAVDQVHPLLSDLLGSLNKLTILPPDFEGKTKMKDWISRLSKMGAADE 180
           FIT+MDSLKLNMVAVDQV+PLLSDL  SLNKL+ILPPDFEGKTKMK+W+SRLSKMGAADE
Sbjct: 122 FITSMDSLKLNMVAVDQVYPLLSDLSASLNKLSILPPDFEGKTKMKEWLSRLSKMGAADE 181

Query: 181 LTEQQSRQLHFDLESSYNSFMAALPNAG 208
           LTEQQSRQLHFDLESSYNSFMAALP AG
Sbjct: 182 LTEQQSRQLHFDLESSYNSFMAALPKAG 209

Component of the ESCRT-I complex (endosomal sorting complex required for transport I), a regulator of vesicular trafficking process. Required for the sorting of endocytic ubiquitinated cargos into multivesicular bodies (MVBs). Mediates the association to the ESCRT-0 complex.
Arabidopsis thaliana (taxid: 3702)

>sp|O65421|VP281_ARATH Vacuolar protein sorting-associated protein 28 homolog 1 OS=Arabidopsis thaliana GN=VPS28-1 PE=1 SV=1

 Score =  362 bits (929), Expect = 1e-99,   Method: Compositional matrix adjust.
 Identities = 180/209 (86%), Positives = 199/209 (95%)

Query: 1   MEVKLWNDKREREMYENFAELYAIIKATEKLEKAYVRDIISSSEYETECQKLIAHFKTLS 60
           MEVKLWNDKREREMYENFAELYAIIKATEKLEKAY+RD+IS SEYETECQKLI HFKTLS
Sbjct: 1   MEVKLWNDKREREMYENFAELYAIIKATEKLEKAYIRDLISPSEYETECQKLIVHFKTLS 60

Query: 61  STLKDIVPSIERFADTYKMDCPAALNRLVTSGVPATVEHRAAAVASTTTSAAIVAECVQN 120
           ++LKD+VP+IERFA+TYKMDC AA+ RLVTSGVPATVEHRAAA AST++SA++VAECVQN
Sbjct: 61  ASLKDMVPNIERFAETYKMDCSAAVYRLVTSGVPATVEHRAAASASTSSSASVVAECVQN 120

Query: 121 FITAMDSLKLNMVAVDQVHPLLSDLLGSLNKLTILPPDFEGKTKMKDWISRLSKMGAADE 180
           FIT+MDSLKLNMVAVDQV+PLLSDL  SLNKL+ILPPDFEGK KMK+W+ RLSKMGA+DE
Sbjct: 121 FITSMDSLKLNMVAVDQVYPLLSDLSASLNKLSILPPDFEGKIKMKEWLLRLSKMGASDE 180

Query: 181 LTEQQSRQLHFDLESSYNSFMAALPNAGT 209
           LTEQQ+RQLHFDLESSYNSFMAALPNAG 
Sbjct: 181 LTEQQARQLHFDLESSYNSFMAALPNAGN 209

Component of the ESCRT-I complex (endosomal sorting complex required for transport I), a regulator of vesicular trafficking process. Required for the sorting of endocytic ubiquitinated cargos into multivesicular bodies (MVBs). Mediates the association to the ESCRT-0 complex.

Arabidopsis thaliana (taxid: 3702)

>sp|Q54NF1|VPS28_DICDI Vacuolar protein sorting-associated protein 28 OS=Dictyostelium discoideum GN=vps28 PE=3 SV=1

 Score =  226 bits (575), Expect = 1e-58,   Method: Compositional matrix adjust.
 Identities = 111/203 (54%), Positives = 145/203 (71%)

Query: 2   EVKLWNDKREREMYENFAELYAIIKATEKLEKAYVRDIISSSEYETECQKLIAHFKTLSS 61
           EVKL+N+  EREMYEN AELY+IIK TE LEKAY+RD +S  +Y T C KLIA FK+  +
Sbjct: 84  EVKLFNNNIEREMYENLAELYSIIKVTEHLEKAYIRDDVSPKDYTTACSKLIAQFKSSQT 143

Query: 62  TLKDIVPSIERFADTYKMDCPAALNRLVTSGVPATVEHRAAAVASTTTSAAIVAECVQNF 121
            LKD V ++ +F   Y ++C AA +RLV  G P+T+EH     ++ +  A  VAE VQ F
Sbjct: 144 LLKDQVSNVGQFMKDYDLNCKAAFDRLVIKGFPSTLEHNTNESSTDSAMAKNVAEAVQLF 203

Query: 122 ITAMDSLKLNMVAVDQVHPLLSDLLGSLNKLTILPPDFEGKTKMKDWISRLSKMGAADEL 181
           IT MDS++L +V+VD ++PLLSDL+ SLNK   L P FEGK K+K+WIS L++M A DEL
Sbjct: 204 ITTMDSIRLKLVSVDGIYPLLSDLMESLNKNQWLGPTFEGKEKIKNWISILNQMKATDEL 263

Query: 182 TEQQSRQLHFDLESSYNSFMAAL 204
            + QSRQL FDL++SYN F  A+
Sbjct: 264 DDDQSRQLLFDLDNSYNIFYKAI 286

Component of the ESCRT-I complex, a regulator of vesicular trafficking process.

Dictyostelium discoideum (taxid: 44689)

>sp|Q9V359|VPS28_DROME Vacuolar protein sorting-associated protein 28 homolog OS=Drosophila melanogaster GN=Vps28 PE=1 SV=1

 Score =  165 bits (417), Expect = 3e-40,   Method: Compositional matrix adjust.
 Identities = 82/200 (41%), Positives = 123/200 (61%), Gaps = 8/200 (4%)

Query: 2   EVKLWNDKREREMYENFAELYAIIKATEKLEKAYVRDIISSSEYETECQKLIAHFKTLSS 61
           EVKL+ + RERE Y+N A+LYAII   ++LEKAY+RD I+  EY   C K +  +K    
Sbjct: 11  EVKLFRNAREREKYDNMADLYAIINTIQQLEKAYIRDCITPQEYTAACSKYLVQYKVAFK 70

Query: 62  TLK-DIVPSIERFADTYKMDCPAALNRLVTSGVPATVEHRAAAVASTTTSAAIVAECVQN 120
            ++ D  PS+E F   +++DCPAAL R +    P T+            ++  +AE V  
Sbjct: 71  QVQCDEFPSVETFVKKFRLDCPAALER-IREDRPITIRD------DKGNTSKCIAEIVSL 123

Query: 121 FITAMDSLKLNMVAVDQVHPLLSDLLGSLNKLTILPPDFEGKTKMKDWISRLSKMGAADE 180
           FIT MD L+L +  +D + P + DL  ++N+L+++P DF+ K K++ W+  L++M A+DE
Sbjct: 124 FITIMDKLRLQINTMDALQPDVKDLADNMNRLSLIPEDFDAKLKVEKWLGSLNEMQASDE 183

Query: 181 LTEQQSRQLHFDLESSYNSF 200
           L+E Q RQ  FDLES+Y  F
Sbjct: 184 LSEGQVRQFLFDLESAYADF 203

Component of the ESCRT-I complex, a regulator of vesicular trafficking process.

Drosophila melanogaster (taxid: 7227)

>sp|Q9UK41|VPS28_HUMAN Vacuolar protein sorting-associated protein 28 homolog OS=Homo sapiens GN=VPS28 PE=1 SV=1

 Score =  163 bits (413), Expect = 7e-40,   Method: Compositional matrix adjust.
 Identities = 78/200 (39%), Positives = 126/200 (63%), Gaps = 8/200 (4%)

Query: 2   EVKLWNDKREREMYENFAELYAIIKATEKLEKAYVRDIISSSEYETECQKLIAHFKTLSS 61
           EVKL+ + RERE Y+N AEL+A++K  + LEKAY++D +S SEY   C +L+  +K    
Sbjct: 23  EVKLYKNAREREKYDNMAELFAVVKTMQALEKAYIKDCVSPSEYTAACSRLLVQYKAAFR 82

Query: 62  TLKDI-VPSIERFADTYKMDCPAALNRLVTSGVPATVEHRAAAVASTTTSAAIVAECVQN 120
            ++   + SI+ F   +++DCP A+ R +    P T++     +         +A+ V  
Sbjct: 83  QVQGSEISSIDEFCRKFRLDCPLAMER-IKEDRPITIKDDKGNLNRC------IADVVSL 135

Query: 121 FITAMDSLKLNMVAVDQVHPLLSDLLGSLNKLTILPPDFEGKTKMKDWISRLSKMGAADE 180
           FIT MD L+L + A+D++ P L +L+ ++++++ LPPDFEG+  +  W+  LS M A+DE
Sbjct: 136 FITVMDKLRLEIRAMDEIQPDLRELMETMHRMSHLPPDFEGRQTVSQWLQTLSGMSASDE 195

Query: 181 LTEQQSRQLHFDLESSYNSF 200
           L + Q RQ+ FDLES+YN+F
Sbjct: 196 LDDSQVRQMLFDLESAYNAF 215

Component of the ESCRT-I complex, a regulator of vesicular trafficking process.

Homo sapiens (taxid: 9606)

>sp|Q3T178|VPS28_BOVIN Vacuolar protein sorting-associated protein 28 homolog OS=Bos taurus GN=VPS28 PE=2 SV=1

 Score =  161 bits (407), Expect = 3e-39,   Method: Compositional matrix adjust.
 Identities = 76/200 (38%), Positives = 126/200 (63%), Gaps = 8/200 (4%)

Query: 2   EVKLWNDKREREMYENFAELYAIIKATEKLEKAYVRDIISSSEYETECQKLIAHFKTLSS 61
           EVKL+ + RERE Y+N AEL+A++K  + LEKAY++D ++ +EY   C +L+  +K    
Sbjct: 23  EVKLYKNAREREKYDNMAELFAVVKTMQALEKAYIKDCVTPNEYTAACSRLLVQYKAAFR 82

Query: 62  TLKDI-VPSIERFADTYKMDCPAALNRLVTSGVPATVEHRAAAVASTTTSAAIVAECVQN 120
            ++   + SI+ F   +++DCP A+ R +    P T++     +         +A+ V  
Sbjct: 83  QVQGSEISSIDEFCRKFRLDCPLAMER-IKEDRPITIKDDKGNLNRC------IADVVSL 135

Query: 121 FITAMDSLKLNMVAVDQVHPLLSDLLGSLNKLTILPPDFEGKTKMKDWISRLSKMGAADE 180
           FIT MD L+L + A+D++ P L +L+ ++++++ LPPDFEG+  +  W+  LS M A+DE
Sbjct: 136 FITVMDKLRLEIRAMDEIQPDLRELMETMHRMSHLPPDFEGRQTVSQWLQTLSGMSASDE 195

Query: 181 LTEQQSRQLHFDLESSYNSF 200
           L + Q RQ+ FDLES+YN+F
Sbjct: 196 LDDSQVRQMLFDLESAYNAF 215

Component of the ESCRT-I complex, a regulator of vesicular trafficking process.

Bos taurus (taxid: 9913)

>sp|Q9D1C8|VPS28_MOUSE Vacuolar protein sorting-associated protein 28 homolog OS=Mus musculus GN=Vps28 PE=2 SV=1

 Score =  161 bits (407), Expect = 4e-39,   Method: Compositional matrix adjust.
 Identities = 76/200 (38%), Positives = 126/200 (63%), Gaps = 8/200 (4%)

Query: 2   EVKLWNDKREREMYENFAELYAIIKATEKLEKAYVRDIISSSEYETECQKLIAHFKTLSS 61
           EVKL+ + RERE Y+N AEL+A++K  + LEKAY++D ++ +EY   C +L+  +K    
Sbjct: 23  EVKLYKNAREREKYDNMAELFAVVKTMQALEKAYIKDCVTPNEYTAACSRLLVQYKAAFR 82

Query: 62  TLKDI-VPSIERFADTYKMDCPAALNRLVTSGVPATVEHRAAAVASTTTSAAIVAECVQN 120
            ++   + SI+ F   +++DCP A+ R +    P T++     +         +A+ V  
Sbjct: 83  QVQGSEISSIDEFCRKFRLDCPLAMER-IKEDRPITIKDDKGNLNRC------IADVVSL 135

Query: 121 FITAMDSLKLNMVAVDQVHPLLSDLLGSLNKLTILPPDFEGKTKMKDWISRLSKMGAADE 180
           FIT MD L+L + A+D++ P L +L+ ++++++ LPPDFEG+  +  W+  LS M A+DE
Sbjct: 136 FITVMDKLRLEIRAMDEIQPDLRELMETMHRMSHLPPDFEGRQTVSQWLQTLSGMSASDE 195

Query: 181 LTEQQSRQLHFDLESSYNSF 200
           L + Q RQ+ FDLES+YN+F
Sbjct: 196 LDDSQVRQMLFDLESAYNAF 215

Component of the ESCRT-I complex, a regulator of vesicular trafficking process.

Mus musculus (taxid: 10090)

>sp|B5DEN9|VPS28_RAT Vacuolar protein sorting-associated protein 28 homolog OS=Rattus norvegicus GN=Vps28 PE=2 SV=1

 Score =  161 bits (407), Expect = 4e-39,   Method: Compositional matrix adjust.
 Identities = 76/200 (38%), Positives = 126/200 (63%), Gaps = 8/200 (4%)

Query: 2   EVKLWNDKREREMYENFAELYAIIKATEKLEKAYVRDIISSSEYETECQKLIAHFKTLSS 61
           EVKL+ + RERE Y+N AEL+A++K  + LEKAY++D ++ +EY   C +L+  +K    
Sbjct: 30  EVKLYKNAREREKYDNMAELFAVVKTMQALEKAYIKDCVTPNEYTAACSRLLVQYKAAFR 89

Query: 62  TLKDI-VPSIERFADTYKMDCPAALNRLVTSGVPATVEHRAAAVASTTTSAAIVAECVQN 120
            ++   + SI+ F   +++DCP A+ R +    P T++     +         +A+ V  
Sbjct: 90  QVQGSEISSIDEFCRKFRLDCPLAMER-IKEDRPITIKDDKGNLNRC------IADVVSL 142

Query: 121 FITAMDSLKLNMVAVDQVHPLLSDLLGSLNKLTILPPDFEGKTKMKDWISRLSKMGAADE 180
           FIT MD L+L + A+D++ P L +L+ ++++++ LPPDFEG+  +  W+  LS M A+DE
Sbjct: 143 FITVMDKLRLEIRAMDEIQPDLRELMETMHRMSHLPPDFEGRQTVSQWLQTLSGMSASDE 202

Query: 181 LTEQQSRQLHFDLESSYNSF 200
           L + Q RQ+ FDLES+YN+F
Sbjct: 203 LDDSQVRQMLFDLESAYNAF 222

Component of the endosomal sorting complex required for transport-I (ESCRT-I) complex, a regulator of vesicular trafficking process (By similarity). The ESCRT-I complex participates in the sorting of membrane proteins into vesicles that bud into late endosomal compartments called multivesicular bodies, and is also involved in the budding of many viruses.

Rattus norvegicus (taxid: 10116)

>sp|A8XWB7|VPS28_CAEBR Vacuolar protein sorting-associated protein 28 homolog OS=Caenorhabditis briggsae GN=vps-28 PE=3 SV=1

 Score =  159 bits (402), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 85/203 (41%), Positives = 124/203 (61%), Gaps = 8/203 (3%)

Query: 2   EVKLWNDKREREMYENFAELYAIIKATEKLEKAYVRDIISSSEYETECQKLIAHFKTLSS 61
           EV+L+ +  ERE  EN +EL+A++ A E LEK + RD +++ EY+TEC KLI  +K ++ 
Sbjct: 10  EVRLFENHSEREQMENLSELFAVLNALEHLEKMFSRDHVTADEYKTECFKLIDQYK-VTM 68

Query: 62  TLKDIVPSIERFADTYKMDCPAALNRLVTSGVPATVEHRAAAVASTTTSAAIVAECVQNF 121
            L     SIE FA  Y++ CPAA+ R +  G P TV+     V         +A  V+ F
Sbjct: 69  RLVHGATSIEEFAKKYRLHCPAAIER-IREGRPITVKDDQGNVLKH------IASIVEQF 121

Query: 122 ITAMDSLKLNMVAVDQVHPLLSDLLGSLNKLTILPPDFEGKTKMKDWISRLSKMGAADEL 181
           IT +DSL+LN  AVD ++P+L DL  ++N  + +P D    TK+K W  RLS M A DE+
Sbjct: 122 ITFLDSLRLNTRAVDDLYPVLDDLYNAINSTSRVPIDANVTTKVKKWHDRLSSMAATDEI 181

Query: 182 TEQQSRQLHFDLESSYNSFMAAL 204
           ++ ++RQ+ FD E +Y SF  AL
Sbjct: 182 SDDEARQMIFDTEGAYQSFQKAL 204

Component of the ESCRT-I complex, a regulator of vesicular trafficking process.

Caenorhabditis briggsae (taxid: 6238)

>sp|Q9NA26|VPS28_CAEEL Vacuolar protein sorting-associated protein 28 homolog OS=Caenorhabditis elegans GN=vps-28 PE=1 SV=1

 Score =  155 bits (391), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 84/203 (41%), Positives = 126/203 (62%), Gaps = 8/203 (3%)

Query: 2   EVKLWNDKREREMYENFAELYAIIKATEKLEKAYVRDIISSSEYETECQKLIAHFKTLSS 61
           EV+L+ +  ERE  EN +EL+A++ A E LEK + RD +S+ EY++EC KLI  +K ++ 
Sbjct: 11  EVRLFENHSEREQMENLSELFAVLNALEHLEKMFSRDHVSADEYKSECFKLIDQYK-VTM 69

Query: 62  TLKDIVPSIERFADTYKMDCPAALNRLVTSGVPATVEHRAAAVASTTTSAAIVAECVQNF 121
            L     SIE FA  Y++ CPAA+ R +  G P TV+     V         +A  V+ F
Sbjct: 70  RLVHGATSIEDFAKKYRLHCPAAIER-IREGRPITVKDDQGNVLKH------IASIVEQF 122

Query: 122 ITAMDSLKLNMVAVDQVHPLLSDLLGSLNKLTILPPDFEGKTKMKDWISRLSKMGAADEL 181
           IT +D+L+LN  AVD ++P L DL  ++N  + +P D    TK+K W  RLS M A+DE+
Sbjct: 123 ITFLDALRLNTRAVDDLYPGLDDLYNAINTTSRVPIDAIVTTKVKKWHDRLSSMAASDEI 182

Query: 182 TEQQSRQLHFDLESSYNSFMAAL 204
           +++ +RQ+ FD+ES+Y +F  AL
Sbjct: 183 SDEDARQMIFDVESAYQAFNKAL 205

Component of the ESCRT-I complex, a regulator of vesicular trafficking process.

Caenorhabditis elegans (taxid: 6239)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	209
224078874	209	predicted protein [Populus trichocarpa]	1.0	1.0	0.923	1e-111
357475863	210	Vacuolar protein sorting-associated prot	0.995	0.990	0.889	1e-107
284433796	209	vacuolar protein sorting-associated prot	1.0	1.0	0.933	1e-106
5732073	209	contains similarity to S. cerevisiae vac	0.995	0.995	0.875	1e-105
30679943	210	vacuolar protein sorting-associated prot	0.995	0.990	0.875	1e-105
255560842	209	Vacuolar protein sorting-associated prot	1.0	1.0	0.918	1e-105
297809685	209	hypothetical protein ARALYDRAFT_490145 [	0.995	0.995	0.870	1e-105
225470408	209	PREDICTED: vacuolar protein sorting-asso	1.0	1.0	0.918	1e-104
255637619	212	unknown [Glycine max]	1.0	0.985	0.861	1e-104
449433886	209	PREDICTED: vacuolar protein sorting-asso	1.0	1.0	0.909	1e-103

>gi|224078874|ref|XP_002305661.1| predicted protein [Populus trichocarpa] gi|118483725|gb|ABK93756.1| unknown [Populus trichocarpa] gi|222848625|gb|EEE86172.1| predicted protein [Populus trichocarpa]

 Score =  406 bits (1044), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 193/209 (92%), Positives = 202/209 (96%)

Query: 1   MEVKLWNDKREREMYENFAELYAIIKATEKLEKAYVRDIISSSEYETECQKLIAHFKTLS 60
           MEVKLWNDKREREMYENFAELYAIIKATEKLEKAYVRDIISSSEYE ECQKLIAHFKTL+
Sbjct: 1   MEVKLWNDKREREMYENFAELYAIIKATEKLEKAYVRDIISSSEYEMECQKLIAHFKTLA 60

Query: 61  STLKDIVPSIERFADTYKMDCPAALNRLVTSGVPATVEHRAAAVASTTTSAAIVAECVQN 120
           S+LKD VPSIERFADTYKMDCPAA+NRLVTSGVPATVEHRAAA  S+TTSA+IVAECVQN
Sbjct: 61  SSLKDTVPSIERFADTYKMDCPAAINRLVTSGVPATVEHRAAAAVSSTTSASIVAECVQN 120

Query: 121 FITAMDSLKLNMVAVDQVHPLLSDLLGSLNKLTILPPDFEGKTKMKDWISRLSKMGAADE 180
           FITAMDSLKLNMVAVDQVHPLLSDL  SLNKL+ILPPDFEGKTKMK+WI RLSKMGAADE
Sbjct: 121 FITAMDSLKLNMVAVDQVHPLLSDLSASLNKLSILPPDFEGKTKMKEWILRLSKMGAADE 180

Query: 181 LTEQQSRQLHFDLESSYNSFMAALPNAGT 209
           LTEQQ+RQLHFDLESSYNSFMAALP+AGT
Sbjct: 181 LTEQQARQLHFDLESSYNSFMAALPSAGT 209

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357475863|ref|XP_003608217.1| Vacuolar protein sorting-associated protein-like protein [Medicago truncatula] gi|355509272|gb|AES90414.1| Vacuolar protein sorting-associated protein-like protein [Medicago truncatula]

 Score =  394 bits (1011), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 185/208 (88%), Positives = 195/208 (93%)

Query: 2   EVKLWNDKREREMYENFAELYAIIKATEKLEKAYVRDIISSSEYETECQKLIAHFKTLSS 61
           EVKLWNDKREREMY+NFAELYAIIKATE+LEKAYVRDIIS  EYE ECQKLIAHFKTL+S
Sbjct: 3   EVKLWNDKREREMYDNFAELYAIIKATERLEKAYVRDIISPKEYEIECQKLIAHFKTLAS 62

Query: 62  TLKDIVPSIERFADTYKMDCPAALNRLVTSGVPATVEHRAAAVASTTTSAAIVAECVQNF 121
           TLKD VPSI+RFADTY+M+CPAA+NRLV SGVPATVEHRA A A  +TSAA VAECVQNF
Sbjct: 63  TLKDTVPSIDRFADTYRMECPAAINRLVVSGVPATVEHRATAAAGVSTSAATVAECVQNF 122

Query: 122 ITAMDSLKLNMVAVDQVHPLLSDLLGSLNKLTILPPDFEGKTKMKDWISRLSKMGAADEL 181
           IT+MDSLKLNMVAVDQVHPLLSDL GSLNKLTILPPDFEGK KMKDWI RLSKMGAADEL
Sbjct: 123 ITSMDSLKLNMVAVDQVHPLLSDLYGSLNKLTILPPDFEGKIKMKDWIGRLSKMGAADEL 182

Query: 182 TEQQSRQLHFDLESSYNSFMAALPNAGT 209
           TEQQ+RQLHFDLESSYNSFMAALPNAGT
Sbjct: 183 TEQQARQLHFDLESSYNSFMAALPNAGT 210

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|284433796|gb|ADB85104.1| vacuolar protein sorting-associated protein VPS28 [Jatropha curcas]

 Score =  389 bits (999), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 195/209 (93%), Positives = 202/209 (96%)

Query: 1   MEVKLWNDKREREMYENFAELYAIIKATEKLEKAYVRDIISSSEYETECQKLIAHFKTLS 60
           MEVKLWNDKREREMYENFAELYAIIKATEKLEKAY+RDII+SSEYETEC KLIAHFKTL+
Sbjct: 1   MEVKLWNDKREREMYENFAELYAIIKATEKLEKAYIRDIITSSEYETECHKLIAHFKTLA 60

Query: 61  STLKDIVPSIERFADTYKMDCPAALNRLVTSGVPATVEHRAAAVASTTTSAAIVAECVQN 120
           STLKDIVPSIERFADTYKMDCPAA+NRLVTSGVPATVEHRAAA AS TTSAAIVAECVQN
Sbjct: 61  STLKDIVPSIERFADTYKMDCPAAINRLVTSGVPATVEHRAAAAASATTSAAIVAECVQN 120

Query: 121 FITAMDSLKLNMVAVDQVHPLLSDLLGSLNKLTILPPDFEGKTKMKDWISRLSKMGAADE 180
           FITAMDSLKLNMVAVDQVHPLLSDL  SLNKL+ILPPDFEGKTKMK+WISRLSKMGAADE
Sbjct: 121 FITAMDSLKLNMVAVDQVHPLLSDLSASLNKLSILPPDFEGKTKMKEWISRLSKMGAADE 180

Query: 181 LTEQQSRQLHFDLESSYNSFMAALPNAGT 209
           LTEQQ+RQLHFDLESS NSFMAALP AGT
Sbjct: 181 LTEQQTRQLHFDLESSNNSFMAALPTAGT 209

Source: Jatropha curcas

Species: Jatropha curcas

Genus: Jatropha

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|5732073|gb|AAD48972.1|AF162444_4 contains similarity to S. cerevisiae vacuolar protein sorting-associated protein VPS28 (GB:U39205) [Arabidopsis thaliana] gi|7267259|emb|CAB81042.1| AT4g05000 [Arabidopsis thaliana]

 Score =  387 bits (995), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 182/208 (87%), Positives = 197/208 (94%)

Query: 1   MEVKLWNDKREREMYENFAELYAIIKATEKLEKAYVRDIISSSEYETECQKLIAHFKTLS 60
           MEVKLWNDKREREMYENFAEL+AIIKATEKLEKAY+RD+I+ SEYE+ECQKLI HFKTLS
Sbjct: 1   MEVKLWNDKREREMYENFAELFAIIKATEKLEKAYIRDLINPSEYESECQKLIVHFKTLS 60

Query: 61  STLKDIVPSIERFADTYKMDCPAALNRLVTSGVPATVEHRAAAVASTTTSAAIVAECVQN 120
           +TLKD VP+IERFADTYKMDCPAAL RLVTSG+PATVEHRA   AST+ SA+IVAECVQN
Sbjct: 61  ATLKDTVPNIERFADTYKMDCPAALYRLVTSGLPATVEHRATVAASTSNSASIVAECVQN 120

Query: 121 FITAMDSLKLNMVAVDQVHPLLSDLLGSLNKLTILPPDFEGKTKMKDWISRLSKMGAADE 180
           FIT+MDSLKLNMVAVDQV+PLLSDL  SLNKL+ILPPDFEGKTKMK+W+SRLSKMGAADE
Sbjct: 121 FITSMDSLKLNMVAVDQVYPLLSDLSASLNKLSILPPDFEGKTKMKEWLSRLSKMGAADE 180

Query: 181 LTEQQSRQLHFDLESSYNSFMAALPNAG 208
           LTEQQSRQLHFDLESSYNSFMAALP AG
Sbjct: 181 LTEQQSRQLHFDLESSYNSFMAALPKAG 208

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|30679943|ref|NP_567281.2| vacuolar protein sorting-associated protein 28-2 [Arabidopsis thaliana] gi|42572833|ref|NP_974513.1| vacuolar protein sorting-associated protein 28-2 [Arabidopsis thaliana] gi|152061129|sp|Q9S9T7.2|VP282_ARATH RecName: Full=Vacuolar protein sorting-associated protein 28 homolog 2 gi|50253482|gb|AAT71943.1| At4g05000 [Arabidopsis thaliana] gi|52421311|gb|AAU45225.1| At4g05000 [Arabidopsis thaliana] gi|110738465|dbj|BAF01158.1| hypothetical protein [Arabidopsis thaliana] gi|332657056|gb|AEE82456.1| vacuolar protein sorting-associated protein 28-2 [Arabidopsis thaliana] gi|332657057|gb|AEE82457.1| vacuolar protein sorting-associated protein 28-2 [Arabidopsis thaliana]

 Score =  387 bits (995), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 182/208 (87%), Positives = 197/208 (94%)

Query: 1   MEVKLWNDKREREMYENFAELYAIIKATEKLEKAYVRDIISSSEYETECQKLIAHFKTLS 60
           MEVKLWNDKREREMYENFAEL+AIIKATEKLEKAY+RD+I+ SEYE+ECQKLI HFKTLS
Sbjct: 2   MEVKLWNDKREREMYENFAELFAIIKATEKLEKAYIRDLINPSEYESECQKLIVHFKTLS 61

Query: 61  STLKDIVPSIERFADTYKMDCPAALNRLVTSGVPATVEHRAAAVASTTTSAAIVAECVQN 120
           +TLKD VP+IERFADTYKMDCPAAL RLVTSG+PATVEHRA   AST+ SA+IVAECVQN
Sbjct: 62  ATLKDTVPNIERFADTYKMDCPAALYRLVTSGLPATVEHRATVAASTSNSASIVAECVQN 121

Query: 121 FITAMDSLKLNMVAVDQVHPLLSDLLGSLNKLTILPPDFEGKTKMKDWISRLSKMGAADE 180
           FIT+MDSLKLNMVAVDQV+PLLSDL  SLNKL+ILPPDFEGKTKMK+W+SRLSKMGAADE
Sbjct: 122 FITSMDSLKLNMVAVDQVYPLLSDLSASLNKLSILPPDFEGKTKMKEWLSRLSKMGAADE 181

Query: 181 LTEQQSRQLHFDLESSYNSFMAALPNAG 208
           LTEQQSRQLHFDLESSYNSFMAALP AG
Sbjct: 182 LTEQQSRQLHFDLESSYNSFMAALPKAG 209

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255560842|ref|XP_002521434.1| Vacuolar protein sorting-associated protein VPS28, putative [Ricinus communis] gi|223539333|gb|EEF40924.1| Vacuolar protein sorting-associated protein VPS28, putative [Ricinus communis]

 Score =  387 bits (995), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 192/209 (91%), Positives = 203/209 (97%)

Query: 1   MEVKLWNDKREREMYENFAELYAIIKATEKLEKAYVRDIISSSEYETECQKLIAHFKTLS 60
           MEVKLWNDKREREMYENFAELYAIIKATEKLEKAY+RDIISSS+YETECQKLIAHFKTL+
Sbjct: 1   MEVKLWNDKREREMYENFAELYAIIKATEKLEKAYIRDIISSSDYETECQKLIAHFKTLA 60

Query: 61  STLKDIVPSIERFADTYKMDCPAALNRLVTSGVPATVEHRAAAVASTTTSAAIVAECVQN 120
           STLKDIVPSIERFADTYKMDCPAA+NRLVTSGVPATVEHRAAA +S TTSAAIVAECVQN
Sbjct: 61  STLKDIVPSIERFADTYKMDCPAAINRLVTSGVPATVEHRAAAASSATTSAAIVAECVQN 120

Query: 121 FITAMDSLKLNMVAVDQVHPLLSDLLGSLNKLTILPPDFEGKTKMKDWISRLSKMGAADE 180
           FITAMDSLKLNMVAVDQV+PLLSDL  SLNKL+ILPPDFEGK KMKDWI+RLSKMGA+DE
Sbjct: 121 FITAMDSLKLNMVAVDQVYPLLSDLSASLNKLSILPPDFEGKLKMKDWITRLSKMGASDE 180

Query: 181 LTEQQSRQLHFDLESSYNSFMAALPNAGT 209
           LTEQQ+RQLHFDLESSYNSFMA LP+AGT
Sbjct: 181 LTEQQARQLHFDLESSYNSFMAVLPSAGT 209

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297809685|ref|XP_002872726.1| hypothetical protein ARALYDRAFT_490145 [Arabidopsis lyrata subsp. lyrata] gi|297318563|gb|EFH48985.1| hypothetical protein ARALYDRAFT_490145 [Arabidopsis lyrata subsp. lyrata]

 Score =  385 bits (990), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 181/208 (87%), Positives = 196/208 (94%)

Query: 1   MEVKLWNDKREREMYENFAELYAIIKATEKLEKAYVRDIISSSEYETECQKLIAHFKTLS 60
           MEVKLWNDKRER+MYENFAEL+AIIKATEKLEKAY+RD+I+  EYE+ECQKLI HFKTLS
Sbjct: 1   MEVKLWNDKRERDMYENFAELFAIIKATEKLEKAYIRDLINPKEYESECQKLIVHFKTLS 60

Query: 61  STLKDIVPSIERFADTYKMDCPAALNRLVTSGVPATVEHRAAAVASTTTSAAIVAECVQN 120
           +TLKD VP+IERFADTYKMDCPAAL RLVTSGVPATVEHRA   AST+ SA+IVAECVQN
Sbjct: 61  ATLKDTVPNIERFADTYKMDCPAALYRLVTSGVPATVEHRATVTASTSNSASIVAECVQN 120

Query: 121 FITAMDSLKLNMVAVDQVHPLLSDLLGSLNKLTILPPDFEGKTKMKDWISRLSKMGAADE 180
           FIT+MDSLKLNMVAVDQV+PLLSDL  SLNKL+ILPPDFEGKTKMK+W+SRLSKMGAADE
Sbjct: 121 FITSMDSLKLNMVAVDQVYPLLSDLSASLNKLSILPPDFEGKTKMKEWLSRLSKMGAADE 180

Query: 181 LTEQQSRQLHFDLESSYNSFMAALPNAG 208
           LTEQQSRQLHFDLESSYNSFMAALP AG
Sbjct: 181 LTEQQSRQLHFDLESSYNSFMAALPKAG 208

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225470408|ref|XP_002273704.1| PREDICTED: vacuolar protein sorting-associated protein 28 homolog 2 isoform 3 [Vitis vinifera] gi|225470410|ref|XP_002273673.1| PREDICTED: vacuolar protein sorting-associated protein 28 homolog 2 isoform 2 [Vitis vinifera] gi|225470412|ref|XP_002273612.1| PREDICTED: vacuolar protein sorting-associated protein 28 homolog 2 isoform 1 [Vitis vinifera] gi|147776671|emb|CAN74473.1| hypothetical protein VITISV_001093 [Vitis vinifera] gi|302144239|emb|CBI23477.3| unnamed protein product [Vitis vinifera]

 Score =  384 bits (986), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 192/209 (91%), Positives = 202/209 (96%)

Query: 1   MEVKLWNDKREREMYENFAELYAIIKATEKLEKAYVRDIISSSEYETECQKLIAHFKTLS 60
           MEVKLWNDKREREMYENFAELYAIIKATEKLEKAYVRDIISS+EYE ECQKLIAHFKTL+
Sbjct: 1   MEVKLWNDKREREMYENFAELYAIIKATEKLEKAYVRDIISSAEYEPECQKLIAHFKTLA 60

Query: 61  STLKDIVPSIERFADTYKMDCPAALNRLVTSGVPATVEHRAAAVASTTTSAAIVAECVQN 120
           STLKD +PSIERFADTYKMDCPAA+NRLVTSGVPATVEHR+AA AS TTSAA+VAECVQN
Sbjct: 61  STLKDTIPSIERFADTYKMDCPAAINRLVTSGVPATVEHRSAAAASATTSAAVVAECVQN 120

Query: 121 FITAMDSLKLNMVAVDQVHPLLSDLLGSLNKLTILPPDFEGKTKMKDWISRLSKMGAADE 180
           FITAMDSLKLNMVAVDQVHPLLSDL  SLNKL+ILPPD+EGKTKMK+WI RLSKMGAADE
Sbjct: 121 FITAMDSLKLNMVAVDQVHPLLSDLFASLNKLSILPPDYEGKTKMKEWIGRLSKMGAADE 180

Query: 181 LTEQQSRQLHFDLESSYNSFMAALPNAGT 209
           LTEQQ+RQLHFDLESSYNSFMAALPNAGT
Sbjct: 181 LTEQQARQLHFDLESSYNSFMAALPNAGT 209

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255637619|gb|ACU19134.1| unknown [Glycine max]

 Score =  381 bits (979), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 180/209 (86%), Positives = 189/209 (90%)

Query: 1   MEVKLWNDKREREMYENFAELYAIIKATEKLEKAYVRDIISSSEYETECQKLIAHFKTLS 60
           MEVKLWNDKREREMY+NF ELYAIIKA E+LEKAYVRDIIS  EYE ECQKLIAHFKTL+
Sbjct: 4   MEVKLWNDKREREMYDNFGELYAIIKAAERLEKAYVRDIISLQEYELECQKLIAHFKTLA 63

Query: 61  STLKDIVPSIERFADTYKMDCPAALNRLVTSGVPATVEHRAAAVASTTTSAAIVAECVQN 120
           STLKD VPSIERFADTYKM+CPA +NRLV SGVPATVEHR    A  +TSAAIVAECVQN
Sbjct: 64  STLKDTVPSIERFADTYKMECPAGINRLVVSGVPATVEHRGTVAAFASTSAAIVAECVQN 123

Query: 121 FITAMDSLKLNMVAVDQVHPLLSDLLGSLNKLTILPPDFEGKTKMKDWISRLSKMGAADE 180
           FIT MD LKLNMVAVDQVHPLLSDL  SLNKLTILPPDFEGKTKMK+WI+RLSKMGAADE
Sbjct: 124 FITFMDFLKLNMVAVDQVHPLLSDLYASLNKLTILPPDFEGKTKMKEWIARLSKMGAADE 183

Query: 181 LTEQQSRQLHFDLESSYNSFMAALPNAGT 209
           LTEQQ+RQLHFDLE  YNSFMAALPNAGT
Sbjct: 184 LTEQQARQLHFDLEFFYNSFMAALPNAGT 212

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449433886|ref|XP_004134727.1| PREDICTED: vacuolar protein sorting-associated protein 28 homolog 2-like [Cucumis sativus] gi|449479366|ref|XP_004155580.1| PREDICTED: vacuolar protein sorting-associated protein 28 homolog 2-like [Cucumis sativus]

 Score =  380 bits (975), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 190/209 (90%), Positives = 199/209 (95%)

Query: 1   MEVKLWNDKREREMYENFAELYAIIKATEKLEKAYVRDIISSSEYETECQKLIAHFKTLS 60
           MEVKLWNDKREREMY+NFAELYAIIKATEKLEKAY+RDIISSS+YE EC KLIAHFKTL+
Sbjct: 1   MEVKLWNDKREREMYDNFAELYAIIKATEKLEKAYIRDIISSSDYEAECFKLIAHFKTLA 60

Query: 61  STLKDIVPSIERFADTYKMDCPAALNRLVTSGVPATVEHRAAAVASTTTSAAIVAECVQN 120
           STLKD VPSIERFADTYKMDCPAA+NRLV +GVPATVEHRAAA AS TTSAAIVAECVQN
Sbjct: 61  STLKDTVPSIERFADTYKMDCPAAINRLVITGVPATVEHRAAAAASATTSAAIVAECVQN 120

Query: 121 FITAMDSLKLNMVAVDQVHPLLSDLLGSLNKLTILPPDFEGKTKMKDWISRLSKMGAADE 180
           FITAMDSLKLNMVAVDQVHPLLSDL  SLNKLTILPPDFEGKTKMK+W+ RLSKMGAADE
Sbjct: 121 FITAMDSLKLNMVAVDQVHPLLSDLSASLNKLTILPPDFEGKTKMKEWLGRLSKMGAADE 180

Query: 181 LTEQQSRQLHFDLESSYNSFMAALPNAGT 209
           LTEQQ+RQLHFDLESSYNSFMAALP AGT
Sbjct: 181 LTEQQARQLHFDLESSYNSFMAALPTAGT 209

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	209
TAIR|locus:2138426	210	VPS28-2 "AT4G05000" [Arabidops	0.995	0.990	0.783	1e-84
TAIR|locus:2119662	209	VPS28-1 "AT4G21560" [Arabidops	0.995	0.995	0.769	2.4e-83
DICTYBASE|DDB_G0285295	288	vps28 "vacuolar protein sortin	0.971	0.704	0.487	8.8e-47
UNIPROTKB|Q9UK41	221	VPS28 "Vacuolar protein sortin	0.918	0.868	0.375	7.4e-34
UNIPROTKB|F1RSP0	228	VPS28 "Uncharacterized protein	0.918	0.842	0.37	2.5e-33
UNIPROTKB|Q3T178	221	VPS28 "Vacuolar protein sortin	0.918	0.868	0.365	3.2e-33
MGI|MGI:1914164	221	Vps28 "vacuolar protein sortin	0.918	0.868	0.365	3.2e-33
RGD|1306537	228	Vps28 "vacuolar protein sortin	0.918	0.842	0.365	3.2e-33
FB|FBgn0021814	210	Vps28 "Vacuolar protein sortin	0.918	0.914	0.385	4.1e-33
WB|WBGene00013598	210	vps-28 [Caenorhabditis elegans	0.933	0.928	0.384	3.3e-31

TAIR|locus:2138426 VPS28-2 "AT4G05000" [Arabidopsis thaliana (taxid:3702)]

 Score = 848 (303.6 bits), Expect = 1.0e-84, P = 1.0e-84
 Identities = 163/208 (78%), Positives = 176/208 (84%)

Query:     1 MEVKLWNDKREREMYENFAELYAIIKATEKLEKAYVRDIISSSEYETECQKLIAHFKTLS 60
             MEVKLWNDKREREMYENFAEL+AIIKATEKLEKAY+RD+I+ SEYE+ECQKLI HFKTLS
Sbjct:     2 MEVKLWNDKREREMYENFAELFAIIKATEKLEKAYIRDLINPSEYESECQKLIVHFKTLS 61

Query:    61 STLKDIVPSIERFADTYKMDCPAALNRLVTSGVPATVEHRXXXXXXXXXXXXXXXECVQN 120
             +TLKD VP+IERFADTYKMDCPAAL RLVTSG+PATVEHR               ECVQN
Sbjct:    62 ATLKDTVPNIERFADTYKMDCPAALYRLVTSGLPATVEHRATVAASTSNSASIVAECVQN 121

Query:   121 FITAMDSLKLNMVAVDQVHPXXXXXXXXXXXXTILPPDFEGKTKMKDWISRLSKMGAADE 180
             FIT+MDSLKLNMVAVDQV+P            +ILPPDFEGKTKMK+W+SRLSKMGAADE
Sbjct:   122 FITSMDSLKLNMVAVDQVYPLLSDLSASLNKLSILPPDFEGKTKMKEWLSRLSKMGAADE 181

Query:   181 LTEQQSRQLHFDLESSYNSFMAALPNAG 208
             LTEQQSRQLHFDLESSYNSFMAALP AG
Sbjct:   182 LTEQQSRQLHFDLESSYNSFMAALPKAG 209

GO:0005215 "transporter activity" evidence=ISS

GO:0005634 "nucleus" evidence=ISM

GO:0006810 "transport" evidence=ISS

GO:0000813 "ESCRT I complex" evidence=ISS

GO:0005515 "protein binding" evidence=IPI

TAIR|locus:2119662 VPS28-1 "AT4G21560" [Arabidopsis thaliana (taxid:3702)]

 Score = 835 (299.0 bits), Expect = 2.4e-83, P = 2.4e-83
 Identities = 160/208 (76%), Positives = 175/208 (84%)

Query:     1 MEVKLWNDKREREMYENFAELYAIIKATEKLEKAYVRDIISSSEYETECQKLIAHFKTLS 60
             MEVKLWNDKREREMYENFAELYAIIKATEKLEKAY+RD+IS SEYETECQKLI HFKTLS
Sbjct:     1 MEVKLWNDKREREMYENFAELYAIIKATEKLEKAYIRDLISPSEYETECQKLIVHFKTLS 60

Query:    61 STLKDIVPSIERFADTYKMDCPAALNRLVTSGVPATVEHRXXXXXXXXXXXXXXXECVQN 120
             ++LKD+VP+IERFA+TYKMDC AA+ RLVTSGVPATVEHR               ECVQN
Sbjct:    61 ASLKDMVPNIERFAETYKMDCSAAVYRLVTSGVPATVEHRAAASASTSSSASVVAECVQN 120

Query:   121 FITAMDSLKLNMVAVDQVHPXXXXXXXXXXXXTILPPDFEGKTKMKDWISRLSKMGAADE 180
             FIT+MDSLKLNMVAVDQV+P            +ILPPDFEGK KMK+W+ RLSKMGA+DE
Sbjct:   121 FITSMDSLKLNMVAVDQVYPLLSDLSASLNKLSILPPDFEGKIKMKEWLLRLSKMGASDE 180

Query:   181 LTEQQSRQLHFDLESSYNSFMAALPNAG 208
             LTEQQ+RQLHFDLESSYNSFMAALPNAG
Sbjct:   181 LTEQQARQLHFDLESSYNSFMAALPNAG 208

GO:0005215 "transporter activity" evidence=ISS

GO:0005634 "nucleus" evidence=ISM

GO:0006810 "transport" evidence=ISS

GO:0000813 "ESCRT I complex" evidence=ISS

GO:0005515 "protein binding" evidence=IPI

GO:0005794 "Golgi apparatus" evidence=IDA

GO:0005802 "trans-Golgi network" evidence=IDA

DICTYBASE|DDB_G0285295 vps28 "vacuolar protein sorting 28 family protein" [Dictyostelium discoideum (taxid:44689)]

 Score = 490 (177.5 bits), Expect = 8.8e-47, P = 8.8e-47
 Identities = 99/203 (48%), Positives = 129/203 (63%)

Query:     2 EVKLWNDKREREMYENFAELYAIIKATEKLEKAYVRDIISSSEYETECQKLIAHFKTLSS 61
             EVKL+N+  EREMYEN AELY+IIK TE LEKAY+RD +S  +Y T C KLIA FK+  +
Sbjct:    84 EVKLFNNNIEREMYENLAELYSIIKVTEHLEKAYIRDDVSPKDYTTACSKLIAQFKSSQT 143

Query:    62 TLKDIVPSIERFADTYKMDCPAALNRLVTSGVPATVEHRXXXXXXXXXXXXXXXECVQNF 121
              LKD V ++ +F   Y ++C AA +RLV  G P+T+EH                E VQ F
Sbjct:   144 LLKDQVSNVGQFMKDYDLNCKAAFDRLVIKGFPSTLEHNTNESSTDSAMAKNVAEAVQLF 203

Query:   122 ITAMDSLKLNMVAVDQVHPXXXXXXXXXXXXTILPPDFEGKTKMKDWISRLSKMGAADEL 181
             IT MDS++L +V+VD ++P              L P FEGK K+K+WIS L++M A DEL
Sbjct:   204 ITTMDSIRLKLVSVDGIYPLLSDLMESLNKNQWLGPTFEGKEKIKNWISILNQMKATDEL 263

Query:   182 TEQQSRQLHFDLESSYNSFMAAL 204
              + QSRQL FDL++SYN F  A+
Sbjct:   264 DDDQSRQLLFDLDNSYNIFYKAI 286

GO:0000813 "ESCRT I complex" evidence=ISS

GO:0003674 "molecular_function" evidence=ND

GO:0006605 "protein targeting" evidence=ISS

GO:0016020 "membrane" evidence=IEA

GO:0015031 "protein transport" evidence=IEA

GO:0006810 "transport" evidence=IEA

GO:0005768 "endosome" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0031902 "late endosome membrane" evidence=IEA

UNIPROTKB|Q9UK41 VPS28 "Vacuolar protein sorting-associated protein 28 homolog" [Homo sapiens (taxid:9606)]

 Score = 368 (134.6 bits), Expect = 7.4e-34, P = 7.4e-34
 Identities = 75/200 (37%), Positives = 114/200 (57%)

Query:     2 EVKLWNDKREREMYENFAELYAIIKATEKLEKAYVRDIISSSEYETECQKLIAHFKTLSS 61
             EVKL+ + RERE Y+N AEL+A++K  + LEKAY++D +S SEY   C +L+  +K    
Sbjct:    23 EVKLYKNAREREKYDNMAELFAVVKTMQALEKAYIKDCVSPSEYTAACSRLLVQYKAAFR 82

Query:    62 TLKDI-VPSIERFADTYKMDCPAALNRLVTSGVPATVEHRXXXXXXXXXXXXXXXECVQN 120
              ++   + SI+ F   +++DCP A+ R +    P T++                 + V  
Sbjct:    83 QVQGSEISSIDEFCRKFRLDCPLAMER-IKEDRPITIKD------DKGNLNRCIADVVSL 135

Query:   121 FITAMDSLKLNMVAVDQVHPXXXXXXXXXXXXTILPPDFEGKTKMKDWISRLSKMGAADE 180
             FIT MD L+L + A+D++ P            + LPPDFEG+  +  W+  LS M A+DE
Sbjct:   136 FITVMDKLRLEIRAMDEIQPDLRELMETMHRMSHLPPDFEGRQTVSQWLQTLSGMSASDE 195

Query:   181 LTEQQSRQLHFDLESSYNSF 200
             L + Q RQ+ FDLES+YN+F
Sbjct:   196 LDDSQVRQMLFDLESAYNAF 215

GO:0015031 "protein transport" evidence=IEA

GO:0005886 "plasma membrane" evidence=IEA

GO:0031902 "late endosome membrane" evidence=IEA

GO:0005737 "cytoplasm" evidence=IDA

GO:0031397 "negative regulation of protein ubiquitination" evidence=IDA

GO:0005768 "endosome" evidence=IDA

GO:0005829 "cytosol" evidence=IDA

GO:0010008 "endosome membrane" evidence=TAS

GO:0016032 "viral reproduction" evidence=TAS

GO:0016044 "cellular membrane organization" evidence=TAS

GO:0016197 "endosomal transport" evidence=TAS

GO:0046788 "egress of virus within host cell" evidence=TAS

GO:0005515 "protein binding" evidence=IPI

UNIPROTKB|F1RSP0 VPS28 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 363 (132.8 bits), Expect = 2.5e-33, P = 2.5e-33
 Identities = 74/200 (37%), Positives = 114/200 (57%)

Query:     2 EVKLWNDKREREMYENFAELYAIIKATEKLEKAYVRDIISSSEYETECQKLIAHFKTLSS 61
             EVKL+ + RERE Y+N AEL+A++K  + LEKAY++D ++ +EY   C +L+  +K    
Sbjct:    30 EVKLYKNAREREKYDNMAELFAVVKTMQALEKAYIKDCVTPNEYTAACSRLLVQYKAAFR 89

Query:    62 TLKDI-VPSIERFADTYKMDCPAALNRLVTSGVPATVEHRXXXXXXXXXXXXXXXECVQN 120
              ++   V SI+ F   +++DCP A+ R +    P T++                 + V  
Sbjct:    90 QVQGSEVSSIDEFCRKFRLDCPLAMER-IKEDRPITIKD------DKGNLNRCIADVVSL 142

Query:   121 FITAMDSLKLNMVAVDQVHPXXXXXXXXXXXXTILPPDFEGKTKMKDWISRLSKMGAADE 180
             FIT MD L+L + A+D++ P            + LPPDFEG+  +  W+  LS M A+DE
Sbjct:   143 FITVMDKLRLEIRAMDEIQPDLRELMETMHRMSHLPPDFEGRQTVSQWLQTLSGMSASDE 202

Query:   181 LTEQQSRQLHFDLESSYNSF 200
             L + Q RQ+ FDLES+YN+F
Sbjct:   203 LDDSQVRQMLFDLESAYNAF 222

GO:0031397 "negative regulation of protein ubiquitination" evidence=IEA

GO:0005829 "cytosol" evidence=IEA

GO:0005768 "endosome" evidence=IEA

UNIPROTKB|Q3T178 VPS28 "Vacuolar protein sorting-associated protein 28 homolog" [Bos taurus (taxid:9913)]

 Score = 362 (132.5 bits), Expect = 3.2e-33, P = 3.2e-33
 Identities = 73/200 (36%), Positives = 114/200 (57%)

Query:     2 EVKLWNDKREREMYENFAELYAIIKATEKLEKAYVRDIISSSEYETECQKLIAHFKTLSS 61
             EVKL+ + RERE Y+N AEL+A++K  + LEKAY++D ++ +EY   C +L+  +K    
Sbjct:    23 EVKLYKNAREREKYDNMAELFAVVKTMQALEKAYIKDCVTPNEYTAACSRLLVQYKAAFR 82

Query:    62 TLKDI-VPSIERFADTYKMDCPAALNRLVTSGVPATVEHRXXXXXXXXXXXXXXXECVQN 120
              ++   + SI+ F   +++DCP A+ R +    P T++                 + V  
Sbjct:    83 QVQGSEISSIDEFCRKFRLDCPLAMER-IKEDRPITIKD------DKGNLNRCIADVVSL 135

Query:   121 FITAMDSLKLNMVAVDQVHPXXXXXXXXXXXXTILPPDFEGKTKMKDWISRLSKMGAADE 180
             FIT MD L+L + A+D++ P            + LPPDFEG+  +  W+  LS M A+DE
Sbjct:   136 FITVMDKLRLEIRAMDEIQPDLRELMETMHRMSHLPPDFEGRQTVSQWLQTLSGMSASDE 195

Query:   181 LTEQQSRQLHFDLESSYNSF 200
             L + Q RQ+ FDLES+YN+F
Sbjct:   196 LDDSQVRQMLFDLESAYNAF 215

GO:0005737 "cytoplasm" evidence=ISS

GO:0031397 "negative regulation of protein ubiquitination" evidence=ISS

GO:0031902 "late endosome membrane" evidence=IEA

GO:0005886 "plasma membrane" evidence=IEA

GO:0015031 "protein transport" evidence=IEA

MGI|MGI:1914164 Vps28 "vacuolar protein sorting 28 (yeast)" [Mus musculus (taxid:10090)]

 Score = 362 (132.5 bits), Expect = 3.2e-33, P = 3.2e-33
 Identities = 73/200 (36%), Positives = 114/200 (57%)

Query:     2 EVKLWNDKREREMYENFAELYAIIKATEKLEKAYVRDIISSSEYETECQKLIAHFKTLSS 61
             EVKL+ + RERE Y+N AEL+A++K  + LEKAY++D ++ +EY   C +L+  +K    
Sbjct:    23 EVKLYKNAREREKYDNMAELFAVVKTMQALEKAYIKDCVTPNEYTAACSRLLVQYKAAFR 82

Query:    62 TLKDI-VPSIERFADTYKMDCPAALNRLVTSGVPATVEHRXXXXXXXXXXXXXXXECVQN 120
              ++   + SI+ F   +++DCP A+ R +    P T++                 + V  
Sbjct:    83 QVQGSEISSIDEFCRKFRLDCPLAMER-IKEDRPITIKD------DKGNLNRCIADVVSL 135

Query:   121 FITAMDSLKLNMVAVDQVHPXXXXXXXXXXXXTILPPDFEGKTKMKDWISRLSKMGAADE 180
             FIT MD L+L + A+D++ P            + LPPDFEG+  +  W+  LS M A+DE
Sbjct:   136 FITVMDKLRLEIRAMDEIQPDLRELMETMHRMSHLPPDFEGRQTVSQWLQTLSGMSASDE 195

Query:   181 LTEQQSRQLHFDLESSYNSF 200
             L + Q RQ+ FDLES+YN+F
Sbjct:   196 LDDSQVRQMLFDLESAYNAF 215

GO:0005515 "protein binding" evidence=IPI

GO:0005737 "cytoplasm" evidence=ISO

GO:0005768 "endosome" evidence=ISO

GO:0005829 "cytosol" evidence=ISO

GO:0005886 "plasma membrane" evidence=IEA

GO:0006810 "transport" evidence=IEA

GO:0015031 "protein transport" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0031397 "negative regulation of protein ubiquitination" evidence=ISO

RGD|1306537 Vps28 "vacuolar protein sorting 28 homolog (S. cerevisiae)" [Rattus norvegicus (taxid:10116)]

 Score = 362 (132.5 bits), Expect = 3.2e-33, P = 3.2e-33
 Identities = 73/200 (36%), Positives = 114/200 (57%)

Query:     2 EVKLWNDKREREMYENFAELYAIIKATEKLEKAYVRDIISSSEYETECQKLIAHFKTLSS 61
             EVKL+ + RERE Y+N AEL+A++K  + LEKAY++D ++ +EY   C +L+  +K    
Sbjct:    30 EVKLYKNAREREKYDNMAELFAVVKTMQALEKAYIKDCVTPNEYTAACSRLLVQYKAAFR 89

Query:    62 TLKDI-VPSIERFADTYKMDCPAALNRLVTSGVPATVEHRXXXXXXXXXXXXXXXECVQN 120
              ++   + SI+ F   +++DCP A+ R +    P T++                 + V  
Sbjct:    90 QVQGSEISSIDEFCRKFRLDCPLAMER-IKEDRPITIKD------DKGNLNRCIADVVSL 142

Query:   121 FITAMDSLKLNMVAVDQVHPXXXXXXXXXXXXTILPPDFEGKTKMKDWISRLSKMGAADE 180
             FIT MD L+L + A+D++ P            + LPPDFEG+  +  W+  LS M A+DE
Sbjct:   143 FITVMDKLRLEIRAMDEIQPDLRELMETMHRMSHLPPDFEGRQTVSQWLQTLSGMSASDE 202

Query:   181 LTEQQSRQLHFDLESSYNSF 200
             L + Q RQ+ FDLES+YN+F
Sbjct:   203 LDDSQVRQMLFDLESAYNAF 222

GO:0005737 "cytoplasm" evidence=ISO;ISS

GO:0005768 "endosome" evidence=IEA;ISO

GO:0005829 "cytosol" evidence=IEA;ISO

GO:0005886 "plasma membrane" evidence=IEA

GO:0015031 "protein transport" evidence=IEA

GO:0031397 "negative regulation of protein ubiquitination" evidence=ISO;ISS

FB|FBgn0021814 Vps28 "Vacuolar protein sorting 28" [Drosophila melanogaster (taxid:7227)]

 Score = 361 (132.1 bits), Expect = 4.1e-33, P = 4.1e-33
 Identities = 77/200 (38%), Positives = 111/200 (55%)

Query:     2 EVKLWNDKREREMYENFAELYAIIKATEKLEKAYVRDIISSSEYETECQKLIAHFKTLSS 61
             EVKL+ + RERE Y+N A+LYAII   ++LEKAY+RD I+  EY   C K +  +K    
Sbjct:    11 EVKLFRNAREREKYDNMADLYAIINTIQQLEKAYIRDCITPQEYTAACSKYLVQYKVAFK 70

Query:    62 TLK-DIVPSIERFADTYKMDCPAALNRLVTSGVPATVEHRXXXXXXXXXXXXXXXECVQN 120
              ++ D  PS+E F   +++DCPAAL R +    P T+                  E V  
Sbjct:    71 QVQCDEFPSVETFVKKFRLDCPAALER-IREDRPITIRD------DKGNTSKCIAEIVSL 123

Query:   121 FITAMDSLKLNMVAVDQVHPXXXXXXXXXXXXTILPPDFEGKTKMKDWISRLSKMGAADE 180
             FIT MD L+L +  +D + P            +++P DF+ K K++ W+  L++M A+DE
Sbjct:   124 FITIMDKLRLQINTMDALQPDVKDLADNMNRLSLIPEDFDAKLKVEKWLGSLNEMQASDE 183

Query:   181 LTEQQSRQLHFDLESSYNSF 200
             L+E Q RQ  FDLES+Y  F
Sbjct:   184 LSEGQVRQFLFDLESAYADF 203

GO:0005575 "cellular_component" evidence=ND

GO:0030036 "actin cytoskeleton organization" evidence=IMP

GO:0007291 "sperm individualization" evidence=IMP

GO:0048749 "compound eye development" evidence=IMP

GO:0005515 "protein binding" evidence=IPI

GO:0009792 "embryo development ending in birth or egg hatching" evidence=IMP

GO:0044130 "negative regulation of growth of symbiont in host" evidence=IMP

GO:0010797 "regulation of multivesicular body size involved in endosome transport" evidence=IDA

WB|WBGene00013598 vps-28 [Caenorhabditis elegans (taxid:6239)]

 Score = 343 (125.8 bits), Expect = 3.3e-31, P = 3.3e-31
 Identities = 78/203 (38%), Positives = 117/203 (57%)

Query:     2 EVKLWNDKREREMYENFAELYAIIKATEKLEKAYVRDIISSSEYETECQKLIAHFKTLSS 61
             EV+L+ +  ERE  EN +EL+A++ A E LEK + RD +S+ EY++EC KLI  +K ++ 
Sbjct:    11 EVRLFENHSEREQMENLSELFAVLNALEHLEKMFSRDHVSADEYKSECFKLIDQYK-VTM 69

Query:    62 TLKDIVPSIERFADTYKMDCPAALNRLVTSGVPATVEHRXXXXXXXXXXXXXXXECVQNF 121
              L     SIE FA  Y++ CPAA+ R +  G P TV+                   V+ F
Sbjct:    70 RLVHGATSIEDFAKKYRLHCPAAIER-IREGRPITVKD------DQGNVLKHIASIVEQF 122

Query:   122 ITAMDSLKLNMVAVDQVHPXXXXXXXXXXXXTILPPDFEGKTKMKDWISRLSKMGAADEL 181
             IT +D+L+LN  AVD ++P            + +P D    TK+K W  RLS M A+DE+
Sbjct:   123 ITFLDALRLNTRAVDDLYPGLDDLYNAINTTSRVPIDAIVTTKVKKWHDRLSSMAASDEI 182

Query:   182 TEQQSRQLHFDLESSYNSFMAAL 204
             +++ +RQ+ FD+ES+Y +F  AL
Sbjct:   183 SDEDARQMIFDVESAYQAFNKAL 205

GO:0040011 "locomotion" evidence=IMP

GO:0040007 "growth" evidence=IMP

GO:0002119 "nematode larval development" evidence=IMP

GO:0040010 "positive regulation of growth rate" evidence=IMP

GO:0009792 "embryo development ending in birth or egg hatching" evidence=IMP

GO:0030163 "protein catabolic process" evidence=IMP

GO:0040035 "hermaphrodite genitalia development" evidence=IMP

GO:0000813 "ESCRT I complex" evidence=IPI

GO:0032801 "receptor catabolic process" evidence=IMP

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q54NF1	VPS28_DICDI	No assigned EC number	0.5467	0.9712	0.7048	yes	no
Q9V359	VPS28_DROME	No assigned EC number	0.41	0.9186	0.9142	yes	no
Q9D1C8	VPS28_MOUSE	No assigned EC number	0.38	0.9186	0.8687	yes	no
Q9UK41	VPS28_HUMAN	No assigned EC number	0.39	0.9186	0.8687	yes	no
Q3T178	VPS28_BOVIN	No assigned EC number	0.38	0.9186	0.8687	yes	no
Q9NA26	VPS28_CAEEL	No assigned EC number	0.4137	0.9330	0.9285	yes	no
B5DEN9	VPS28_RAT	No assigned EC number	0.38	0.9186	0.8421	yes	no
O65421	VP281_ARATH	No assigned EC number	0.8612	1.0	1.0	no	no
Q9S9T7	VP282_ARATH	No assigned EC number	0.875	0.9952	0.9904	yes	no
Q02767	VPS28_YEAST	No assigned EC number	0.4008	0.9425	0.8140	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
3rd Layer	3.1.26	LOW CONFIDENCE prediction!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	209
pfam03997	187	pfam03997, VPS28, VPS28 protein	5e-91

>gnl|CDD|217833 pfam03997, VPS28, VPS28 protein

 Score =  264 bits (676), Expect = 5e-91
 Identities = 98/188 (52%), Positives = 131/188 (69%), Gaps = 2/188 (1%)

Query: 18  FAELYAIIKATEKLEKAYVRDIISSSEYETECQKLIAHFKTLSSTLK-DIVPSIERFADT 76
            +ELYAI+KA E+LEKAY++D +S SEY + C KLI  +K    +++    PSIE F   
Sbjct: 1   LSELYAILKALEQLEKAYIKDCVSPSEYTSTCSKLIVQYKVAFRSVQGTEFPSIEDFCKK 60

Query: 77  YKMDCPAALNRLVTSGVPATVEHRAAAVASTTTSAAIVAECVQNFITAMDSLKLNMVAVD 136
           Y++DCPAA+ R+   G P T E   A        A  +AE VQNFIT MD+L+LN+ A D
Sbjct: 61  YRLDCPAAIERIR-EGRPITAEDSIAPSNDKGNIAKCIAEIVQNFITVMDALRLNINAKD 119

Query: 137 QVHPLLSDLLGSLNKLTILPPDFEGKTKMKDWISRLSKMGAADELTEQQSRQLHFDLESS 196
           Q+HPLLS+L+ S+N+L+ LP DFEG+ K+K W+ RL+KM A+DELT+ Q+RQL FDLES+
Sbjct: 120 QLHPLLSELIVSMNRLSRLPIDFEGRNKVKQWLIRLNKMSASDELTDVQARQLLFDLESA 179

Query: 197 YNSFMAAL 204
           Y SF A L
Sbjct: 180 YASFNALL 187

Length = 187

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	209
KOG3284	213	consensus Vacuolar sorting protein VPS28 [Intracel	100.0
PF03997	188	VPS28: VPS28 protein; InterPro: IPR007143 The Endo	100.0
PF09454	65	Vps23_core: Vps23 core domain; InterPro: IPR017916	92.06
PF09851	31	SHOCT: Short C-terminal domain; InterPro: IPR01864	88.96

>KOG3284 consensus Vacuolar sorting protein VPS28 [Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=5.4e-89  Score=575.89  Aligned_cols=203  Identities=62%  Similarity=0.939  Sum_probs=198.7

Q ss_pred             CcccccCChhHHHHHHhHHHHHHHHHHHHHHHHhhhcCCCChhhHHHHHHHHHHHHHHHHHHHhc-ccCCHHHHHHHhcC
Q 028441            1 MEVKLWNDKREREMYENFAELYAIIKATEKLEKAYVRDIISSSEYETECQKLIAHFKTLSSTLKD-IVPSIERFADTYKM   79 (209)
Q Consensus         1 ~EV~L~~~~~eRe~~e~lAelYSII~tle~LEkAyirD~I~~~eYt~~c~rLl~Qyk~~~~~v~~-~~~~l~~F~~~y~l   79 (209)
                      +||+||.|++|||+|||||+|||||+|+|+|||||+||+|++.|||++|.|||.|||++++.+++ .||+||.|+++|+|
T Consensus        10 ~Evkl~~N~rerE~~enlseLyaIi~ale~LEKAyirD~is~sey~s~c~kLi~Q~k~~~~~~~~~~f~SiE~Fc~kyrl   89 (213)
T KOG3284|consen   10 EEVKLFNNAREREVYENLSELYAIIKALEQLEKAYIRDCISPSEYTSECSKLIVQYKVAFRSVQGTEFPSIEDFCKKYRL   89 (213)
T ss_pred             HHHHHhhchhHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHHHHhcccccCcHHHHHHHHcc
Confidence            48999999999999999999999999999999999999999999999999999999999999954 89999999999999


Q ss_pred             CchHHhhhhhhcCCCceeecccccccCCCcchhHHHHhhhhhhhHhhhhccccchhhhhcchHHHHHHhcccCCCCCCCC
Q 028441           80 DCPAALNRLVTSGVPATVEHRAAAVASTTTSAAIVAECVQNFITAMDSLKLNMVAVDQVHPLLSDLLGSLNKLTILPPDF  159 (209)
Q Consensus        80 ~cp~A~~RL~~~G~PaTveh~~~~~~~~~~~a~~Iae~t~~FIT~MDaLKLn~~a~DqLhPlL~dL~~slnk~~~lp~dF  159 (209)
                      +||+|++|| ++|+|+|++|+..++.++++++|+|||+||||||+|||||||++|||||||+|+||+.|||+++.+|+||
T Consensus        90 ~cp~Ai~Ri-~~~~piT~e~~ia~s~dk~~~ak~IAe~v~nFIT~mDaLrLn~~A~Dql~PlL~dL~~smnrls~~p~df  168 (213)
T KOG3284|consen   90 DCPAAIERI-REGRPITVEDRIAPSADKGNSAKCIAEIVQNFITVMDALRLNINAVDQLYPLLSDLSASMNRLSRLPPDF  168 (213)
T ss_pred             CChHHHHHH-HcCCCCcccccccccCCcccHHHHHHHHHHHHHHHHHHHHHhhHHHHhhcchHHHHHHHHHhhccCCccc
Confidence            999999999 9999999999888777899999999999999999999999999999999999999999999999999999


Q ss_pred             cchhhHHHHHHHHhcCCcccCCCHHHHHHHHHhHHHHHHHHHhhc
Q 028441          160 EGKTKMKDWISRLSKMGAADELTEQQSRQLHFDLESSYNSFMAAL  204 (209)
Q Consensus       160 egk~kl~~Wl~kLn~M~asdeL~eeq~RqllfDle~aY~~F~~~L  204 (209)
                      +||.|+++||++||+|.|||||+|.|+|||+||||+||++|++.|
T Consensus       169 e~r~Kv~~Wl~rls~M~asDeL~e~q~RqllfDLEsAY~~f~~lL  213 (213)
T KOG3284|consen  169 EGRTKVKQWLIRLSKMSASDELTEQQVRQLLFDLESAYNSFNALL  213 (213)
T ss_pred             hhHHHHHHHHHHHhcccccccccHHHHHHHHHHHHHHHHHHHhhC
Confidence            999999999999999999999999999999999999999999986

>PF03997 VPS28: VPS28 protein; InterPro: IPR007143 The Endosomal Sorting Complex Required for Transport (ESCRT) complexes form the machinery driving protein sorting from endosomes to lysosomes

Probab=100.00  E-value=4.5e-86  Score=559.84  Aligned_cols=187  Identities=56%  Similarity=0.927  Sum_probs=159.5

Q ss_pred             HHHHHHHHHHHHHHHHhhhcCCCChhhHHHHHHHHHHHHHHHHHHHhc-ccCCHHHHHHHhcCCchHHhhhhhhcCCCce
Q 028441           18 FAELYAIIKATEKLEKAYVRDIISSSEYETECQKLIAHFKTLSSTLKD-IVPSIERFADTYKMDCPAALNRLVTSGVPAT   96 (209)
Q Consensus        18 lAelYSII~tle~LEkAyirD~I~~~eYt~~c~rLl~Qyk~~~~~v~~-~~~~l~~F~~~y~l~cp~A~~RL~~~G~PaT   96 (209)
                      ||+|||||+|||+||||||||+|+++|||++|+|||+|||++++.+.. .|+||++|+++|+|+||+|++|| ++|+|+|
T Consensus         1 LAeLysII~tle~LEkayikD~It~~eYt~~c~kLl~Qyk~~~~~~~~~~~~~le~F~~~y~l~cp~A~~Rl-~~G~P~T   79 (188)
T PF03997_consen    1 LAELYSIIKTLEHLEKAYIKDSITEKEYTTACNKLLNQYKTILKQLKDDEFPDLEEFMKKYNLDCPAALERL-REGVPAT   79 (188)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTTSS-HHHHHHHHHHHHHHHHHHHTSTTHHHHHHHHHHHHHTTS-HHHHHHHH-HCTSS--
T ss_pred             ChHHHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHHcccccCCCHHHHHHHhcccCChHHHHH-HcCCCCc
Confidence            799999999999999999999999999999999999999999998865 89999999999999999999999 9999999


Q ss_pred             eecccccccCCCcchhHHHHhhhhhhhHhhhhccccchhhhhcchHHHHHHhcccCCCCCCCCcchhhHHHHHHHHhcCC
Q 028441           97 VEHRAAAVASTTTSAAIVAECVQNFITAMDSLKLNMVAVDQVHPLLSDLLGSLNKLTILPPDFEGKTKMKDWISRLSKMG  176 (209)
Q Consensus        97 veh~~~~~~~~~~~a~~Iae~t~~FIT~MDaLKLn~~a~DqLhPlL~dL~~slnk~~~lp~dFegk~kl~~Wl~kLn~M~  176 (209)
                      |+|+++++++++++||+|||+||||||+||||||||+|||||||+|+||+.|||||+.+|+||+||+||++|+++||+|+
T Consensus        80 ie~~~~~~~~~~~~ak~Vae~t~~FIT~mDaLKLn~~a~DqLhPlL~dL~~slnr~~~~~~dfe~r~kl~~Wl~~Ln~m~  159 (188)
T PF03997_consen   80 IEHRISSSSDKGNSAKLVAEATQNFITLMDALKLNYRAKDQLHPLLSDLMQSLNRVTDLPPDFEGRSKLVEWLIKLNGMK  159 (188)
T ss_dssp             ------------CHHHHHHHHHHHHHHHHHHHHTT--BHHHHHHHHHHHHHHHHHCTTS-TT-CCHHHHHHHHHHHHTS-
T ss_pred             hhhhcccccCCchHHHHHHHHhChhhhhhHHHhccchhHhhHhhHHHHHHHHHhccCCCCCCCccHHHHHHHHHHHhCCC
Confidence            99987665577889999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cccCCCHHHHHHHHHhHHHHHHHHHhhcC
Q 028441          177 AADELTEQQSRQLHFDLESSYNSFMAALP  205 (209)
Q Consensus       177 asdeL~eeq~RqllfDle~aY~~F~~~L~  205 (209)
                      |+|||+|+|+|||+||||+||++|+++|+
T Consensus       160 asdeL~e~q~rqllfDle~aY~~F~~~L~  188 (188)
T PF03997_consen  160 ASDELSEEQARQLLFDLESAYNAFYRSLH  188 (188)
T ss_dssp             TT-B--HHHHHHHHHHHHHHHHHHHHCH-
T ss_pred             cccccCHHHHHHHHHHHHHHHHHHHHHhC
Confidence            99999999999999999999999999984

ESCRT complexes are central to receptor down-regulation, lysosome biogenesis, and budding of HIV. Yeast ESCRT-I consists of three protein subunits, VPS23, VPS28, and VPS37. In humans, ESCRT-I comprises TSG101, VPS28, and one of four potential human VPS37 homologues. The main role of ESCRT-I is to recognise ubiquitinated cargo via the UEV domain of the VPS23/TSG101 subunit. The assembly of the ESCRT-I complex is directed by the C-terminal steadiness box (SB) of VPS23, the N-terminal half of VPS28, and the C-terminal half of VPS37. The structure is primarily composed of three long, parallel helical hairpins, each corresponding to a different subunit. The additional domains and motifs extending beyond the core serve as gripping tools for ESCRT-I critical functions [, ].; PDB: 2J9W_B 2J9U_C 2G3K_A 2F66_E 2F6M_D 2J9V_A 2CAZ_E 2P22_B.

>PF09454 Vps23_core: Vps23 core domain; InterPro: IPR017916 The Endosomal Sorting Complex Required for Transport (ESCRT) complexes form the machinery driving protein sorting from endosomes to lysosomes

Probab=92.06  E-value=0.72  Score=33.22  Aligned_cols=49  Identities=24%  Similarity=0.265  Sum_probs=42.6

Q ss_pred             ccCChhHHHHHHhHHHHHHHHHHHHHHHHhhhcCCCChhhHHHHHHHHH
Q 028441            5 LWNDKREREMYENFAELYAIIKATEKLEKAYVRDIISSSEYETECQKLI   53 (209)
Q Consensus         5 L~~~~~eRe~~e~lAelYSII~tle~LEkAyirD~I~~~eYt~~c~rLl   53 (209)
                      .-.++..++.||-.|+-.+|==|+.+|.+|+-++.|+-+.|-.....|=
T Consensus         5 ~~~~~l~~Ql~el~Aed~AieDtiy~L~~al~~g~I~~d~~lK~vR~La   53 (65)
T PF09454_consen    5 VAEDPLSNQLYELVAEDHAIEDTIYYLDRALQRGSIDLDTFLKQVRSLA   53 (65)
T ss_dssp             E-SSHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSS-HHHHHHHHHHHH
T ss_pred             ccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHH
Confidence            3468899999999999999999999999999999999998988876653

ESCRT complexes are central to receptor down-regulation, lysosome biogenesis, and budding of HIV. Yeast ESCRT-I consists of three protein subunits, VPS23, VPS28, and VPS37. In humans, ESCRT-I comprises TSG101, VPS28, and one of four potential human VPS37 homologues. The main role of ESCRT-I is to recognise ubiquitinated cargo via the UEV domain of the VPS23/TSG101 subunit. The assembly of the ESCRT-I complex is directed by the C-terminal steadiness box (SB) of VPS23, the N-terminal half of VPS28, and the C-terminal half of VPS37. The structure is primarily composed of three long, parallel helical hairpins, each corresponding to a different subunit. The additional domains and motifs extending beyond the core serve as gripping tools for ESCRT-I critical functions [, ]. This entry represents the Steadiness box domain.; PDB: 2CAZ_A 2F66_D 2F6M_A 2P22_A.

>PF09851 SHOCT: Short C-terminal domain; InterPro: IPR018649 This family of hypothetical prokaryotic proteins has no known function

Probab=88.96  E-value=0.54  Score=29.03  Aligned_cols=29  Identities=34%  Similarity=0.486  Sum_probs=25.9

Q ss_pred             HHHHHHHHHhhhcCCCChhhHHHHHHHHH
Q 028441           25 IKATEKLEKAYVRDIISSSEYETECQKLI   53 (209)
Q Consensus        25 I~tle~LEkAyirD~I~~~eYt~~c~rLl   53 (209)
                      .-.|+.|...|-++.||++||...=.+||
T Consensus         2 ~~~L~~L~~l~~~G~IseeEy~~~k~~ll   30 (31)
T PF09851_consen    2 EDRLEKLKELYDKGEISEEEYEQKKARLL   30 (31)
T ss_pred             hHHHHHHHHHHHcCCCCHHHHHHHHHHHh
Confidence            45688999999999999999999888876

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	209
2j9w_A	102	Structural Insight Into The Escrt-I-Ii Link And Its		6e-17
2j9u_A	96	2 Angstrom X-Ray Structure Of The Yeast Escrt-I Vps		3e-16
2j9v_A	99	2 Angstrom X-Ray Structure Of The Yeast Escrt-I Vps		5e-16
2g3k_A	94	Crystal Structure Of The C-Terminal Domain Of Vps28		2e-15
2f66_B	116	Structure Of The Escrt-I Endosomal Trafficking Comp		9e-11
2caz_B	155	Escrt-I Core Length = 155		3e-10
2p22_B	118	Structure Of The Yeast Escrt-i Heterotetramer Core		2e-08
2f6m_B	109	Structure Of A Vps23-C:vps28-N Subcomplex Length =		2e-08

>pdb|2J9W|A Chain A, Structural Insight Into The Escrt-I-Ii Link And Its Role In Mvb Trafficking Length = 102

Iteration: 1
 Score = 84.0 bits (206), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 38/85 (44%), Positives = 54/85 (63%)
Query: 116 ECVQNFITAMDSLKLNMVAVDQVHPXXXXXXXXXXXXTILPPDFEGKTKMKDWISRLSKM 175
           + V  FIT MD L+L + A+D++ P            + LPPDFEG+ K+  W+ +LS M
Sbjct: 12  DIVSLFITVMDKLRLEIRAMDEIQPDLRELMETMNRMSHLPPDFEGREKVSQWLQKLSSM 71
Query: 176 GAADELTEQQSRQLHFDLESSYNSF 200
            A+DEL + Q RQ+ FDLES+YN+F
Sbjct: 72  SASDELDDSQVRQMLFDLESAYNAF 96

>pdb|2J9U|A Chain A, 2 Angstrom X-Ray Structure Of The Yeast Escrt-I Vps28 C- Terminus In Complex With The Nzf-N Domain From Escrt-Ii Length = 96

Iteration: 1
 Score = 81.6 bits (200), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 42/89 (47%), Positives = 52/89 (58%), Gaps = 2/89 (2%)
Query: 116 ECVQNFITAMDSLKLNMVAVDQVHPXXXXXXXXXXXXTILPPDFEGKTKMKDWISRLSKM 175
           E   NFIT MD+LKLN  A DQ+HP            T    DFE ++K+ DWI R++K+
Sbjct: 9   EATGNFITVMDALKLNYNAKDQLHPLLAELLISINRVT--RDDFENRSKLIDWIVRINKL 66
Query: 176 GAADELTEQQSRQLHFDLESSYNSFMAAL 204
              D LTE Q R+L FDLE +Y SF A L
Sbjct: 67  SIGDTLTETQIRELLFDLELAYKSFYALL 95

>pdb|2J9V|A Chain A, 2 Angstrom X-Ray Structure Of The Yeast Escrt-I Vps28 C- Terminus Length = 99

Iteration: 1
 Score = 80.9 bits (198), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 42/89 (47%), Positives = 52/89 (58%), Gaps = 2/89 (2%)
Query: 116 ECVQNFITAMDSLKLNMVAVDQVHPXXXXXXXXXXXXTILPPDFEGKTKMKDWISRLSKM 175
           E   NFIT MD+LKLN  A DQ+HP            T    DFE ++K+ DWI R++K+
Sbjct: 12  EATGNFITVMDALKLNYNAKDQLHPLLAELLISINRVT--RDDFENRSKLIDWIVRINKL 69
Query: 176 GAADELTEQQSRQLHFDLESSYNSFMAAL 204
              D LTE Q R+L FDLE +Y SF A L
Sbjct: 70  SIGDTLTETQIRELLFDLELAYKSFYALL 98

>pdb|2G3K|A Chain A, Crystal Structure Of The C-Terminal Domain Of Vps28 Length = 94

Iteration: 1
 Score = 79.3 bits (194), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 41/89 (46%), Positives = 51/89 (57%), Gaps = 2/89 (2%)
Query: 116 ECVQNFITAMDSLKLNMVAVDQVHPXXXXXXXXXXXXTILPPDFEGKTKMKDWISRLSKM 175
           E   NFIT  D+LKLN  A DQ+HP            T    DFE ++K+ DWI R++K+
Sbjct: 8   EATGNFITVXDALKLNYNAKDQLHPLLAELLISINRVT--RDDFENRSKLIDWIVRINKL 65
Query: 176 GAADELTEQQSRQLHFDLESSYNSFMAAL 204
              D LTE Q R+L FDLE +Y SF A L
Sbjct: 66  SIGDTLTETQIRELLFDLELAYKSFYALL 94

>pdb|2F66|B Chain B, Structure Of The Escrt-I Endosomal Trafficking Complex Length = 116

Iteration: 1
 Score = 63.5 bits (153), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 38/106 (35%), Positives = 62/106 (58%), Gaps = 9/106 (8%)
Query: 2   EVKLWNDK---REREMYENFAELYAIIKATEKLEKAYVRDIISSSEYETECQKLIAHFKT 58
           EV L+++    +++E+ E  +E+Y+I+   + +EKAY++D I  ++Y     KL+  FK 
Sbjct: 12  EVPLFDNSITSKDKEVIETLSEIYSIVITLDHVEKAYLKDSIDDTQYTNTVDKLLKQFKV 71
Query: 59  -LSSTLKDIV----PSIERFADTYKMDCPAALNRLVTSGVPATVEH 99
            L+S  K+ +     SIE FADTY +    A+ RL   G+P T EH
Sbjct: 72  YLNSQNKEEINKHFQSIEAFADTYNITASNAITRL-ERGIPITAEH 116

>pdb|2CAZ|B Chain B, Escrt-I Core Length = 155

Iteration: 1
 Score = 61.6 bits (148), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 37/106 (34%), Positives = 61/106 (57%), Gaps = 9/106 (8%)
Query: 2   EVKLWNDK---REREMYENFAELYAIIKATEKLEKAYVRDIISSSEYETECQKLIAHFKT 58
           EV L+++    +++E+ E  +E+Y+I+   + +EKAY++D I  ++Y     KL+  FK 
Sbjct: 29  EVPLFDNSITSKDKEVIETLSEIYSIVITLDHVEKAYLKDSIDDTQYTNTVDKLLKQFKV 88
Query: 59  -LSSTLKDIV----PSIERFADTYKMDCPAALNRLVTSGVPATVEH 99
            L+S  K+ +     SIE F DTY +    A+ RL   G+P T EH
Sbjct: 89  YLNSQNKEEINKHFQSIEAFCDTYNITASNAITRL-ERGIPITAEH 133

>pdb|2P22|B Chain B, Structure Of The Yeast Escrt-i Heterotetramer Core Length = 118

Iteration: 1
 Score = 55.5 bits (132), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 33/95 (34%), Positives = 56/95 (58%), Gaps = 8/95 (8%)
Query: 2   EVKLWNDK---REREMYENFAELYAIIKATEKLEKAYVRDIISSSEYETECQKLIAHFKT 58
           EV L+++    +++E+ E  +E+Y+I+   + +EKAY++D I  ++Y     KL+  FK 
Sbjct: 21  EVPLFDNSITSKDKEVIETLSEIYSIVITLDHVEKAYLKDSIDDTQYTNTVDKLLKQFKV 80
Query: 59  -LSSTLKDIV----PSIERFADTYKMDCPAALNRL 88
            L+S  K+ +     SIE FADTY +    A+ RL
Sbjct: 81  YLNSQNKEEINKHFQSIEAFADTYNITASNAITRL 115

>pdb|2F6M|B Chain B, Structure Of A Vps23-C:vps28-N Subcomplex Length = 109

Iteration: 1
 Score = 55.5 bits (132), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 33/95 (34%), Positives = 56/95 (58%), Gaps = 8/95 (8%)
Query: 2   EVKLWNDK---REREMYENFAELYAIIKATEKLEKAYVRDIISSSEYETECQKLIAHFKT 58
           EV L+++    +++E+ E  +E+Y+I+   + +EKAY++D I  ++Y     KL+  FK 
Sbjct: 12  EVPLFDNSITSKDKEVIETLSEIYSIVITLDHVEKAYLKDSIDDTQYTNTVDKLLKQFKV 71
Query: 59  -LSSTLKDIV----PSIERFADTYKMDCPAALNRL 88
            L+S  K+ +     SIE FADTY +    A+ RL
Sbjct: 72  YLNSQNKEEINKHFQSIEAFADTYNITASNAITRL 106

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	209
2j9w_A	102	VPS28, VPS28-PROV protein; NZF finger, HIV budding	9e-46
2caz_B	155	Vacuolar protein sorting-associated protein VPS28;	4e-40
2j9u_A	96	VPS28, vacuolar protein sorting-associated protein	7e-40
2f6m_B	109	Vacuolar protein sorting-associated protein VPS28;	2e-33
2p22_B	118	Vacuolar protein sorting-associated protein 28; en	5e-33
1qzv_F	154	Plant photosystem I: subunit PSAF; photosynthesis,	1e-04
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	1e-04

>2j9w_A VPS28, VPS28-PROV protein; NZF finger, HIV budding, protein transport; 1.30A {Xenopus laevis} Length = 102

 Score =  146 bits (369), Expect = 9e-46
 Identities = 43/100 (43%), Positives = 67/100 (67%)

Query: 107 TTTSAAIVAECVQNFITAMDSLKLNMVAVDQVHPLLSDLLGSLNKLTILPPDFEGKTKMK 166
                  +A+ V  FIT MD L+L + A+D++ P L +L+ ++N+++ LPPDFEG+ K+ 
Sbjct: 3   MGNLNRCIADIVSLFITVMDKLRLEIRAMDEIQPDLRELMETMNRMSHLPPDFEGREKVS 62

Query: 167 DWISRLSKMGAADELTEQQSRQLHFDLESSYNSFMAALPN 206
            W+ +LS M A+DEL + Q RQ+ FDLES+YN+F   L +
Sbjct: 63  QWLQKLSSMSASDELDDSQVRQMLFDLESAYNAFNRFLHS 102

>2caz_B Vacuolar protein sorting-associated protein VPS28; protein transport, ESCRT, MVB, multivesicular bodies, endosome, lysosome, PH domain, protein sorting; 3.6A {Saccharomyces cerevisiae} SCOP: a.2.17.2 Length = 155

 Score =  133 bits (336), Expect = 4e-40
 Identities = 35/119 (29%), Positives = 59/119 (49%), Gaps = 9/119 (7%)

Query: 2   EVKLWNDK---REREMYENFAELYAIIKATEKLEKAYVRDIISSSEYETECQKLIAHFKT 58
           EV L+++    +++E+ E  +E+Y+I+   + +EKAY++D I  ++Y     KL+  FK 
Sbjct: 29  EVPLFDNSITSKDKEVIETLSEIYSIVITLDHVEKAYLKDSIDDTQYTNTVDKLLKQFKV 88

Query: 59  L-----SSTLKDIVPSIERFADTYKMDCPAALNRLVTSGVPATVEHRAAAVASTTTSAA 112
                    +     SIE F DTY +    A+ RL   G+P T EH  +   S  +   
Sbjct: 89  YLNSQNKEEINKHFQSIEAFCDTYNITASNAITRL-ERGIPITAEHAISTTTSAPSGDN 146

>2j9u_A VPS28, vacuolar protein sorting-associated protein 28; zinc-finger, metal-binding, protein transport; 2.00A {Saccharomyces cerevisiae} SCOP: a.24.28.1 PDB: 2j9v_A 2g3k_A Length = 96

 Score =  130 bits (329), Expect = 7e-40
 Identities = 51/95 (53%), Positives = 67/95 (70%), Gaps = 2/95 (2%)

Query: 110 SAAIVAECVQNFITAMDSLKLNMVAVDQVHPLLSDLLGSLNKLTILPPDFEGKTKMKDWI 169
           +A  VAE   NFIT MD+LKLN  A DQ+HPLL++LL S+N++T    DFE ++K+ DWI
Sbjct: 3   NAKYVAEATGNFITVMDALKLNYNAKDQLHPLLAELLISINRVT--RDDFENRSKLIDWI 60

Query: 170 SRLSKMGAADELTEQQSRQLHFDLESSYNSFMAAL 204
            R++K+   D LTE Q R+L FDLE +Y SF A L
Sbjct: 61  VRINKLSIGDTLTETQIRELLFDLELAYKSFYALL 95

>2f6m_B Vacuolar protein sorting-associated protein VPS28; endosomes, trafficking complex, vacuole protei sorting, ESCRT protein complexes; HET: DDQ; 2.10A {Saccharomyces cerevisiae} SCOP: a.2.17.2 PDB: 2f66_B Length = 109

 Score =  114 bits (287), Expect = 2e-33
 Identities = 30/95 (31%), Positives = 51/95 (53%), Gaps = 8/95 (8%)

Query: 2   EVKLWNDK---REREMYENFAELYAIIKATEKLEKAYVRDIISSSEYETECQKLIAHFKT 58
           EV L+++    +++E+ E  +E+Y+I+   + +EKAY++D I  ++Y     KL+  FK 
Sbjct: 12  EVPLFDNSITSKDKEVIETLSEIYSIVITLDHVEKAYLKDSIDDTQYTNTVDKLLKQFKV 71

Query: 59  L-----SSTLKDIVPSIERFADTYKMDCPAALNRL 88
                    +     SIE FADTY +    A+ RL
Sbjct: 72  YLNSQNKEEINKHFQSIEAFADTYNITASNAITRL 106

>2p22_B Vacuolar protein sorting-associated protein 28; endosome, trafficking complex, VPS23, VPS28, VPS37, MVB12; 2.70A {Saccharomyces cerevisiae} Length = 118

 Score =  114 bits (286), Expect = 5e-33
 Identities = 30/95 (31%), Positives = 51/95 (53%), Gaps = 8/95 (8%)

Query: 2   EVKLWNDK---REREMYENFAELYAIIKATEKLEKAYVRDIISSSEYETECQKLIAHFKT 58
           EV L+++    +++E+ E  +E+Y+I+   + +EKAY++D I  ++Y     KL+  FK 
Sbjct: 21  EVPLFDNSITSKDKEVIETLSEIYSIVITLDHVEKAYLKDSIDDTQYTNTVDKLLKQFKV 80

Query: 59  L-----SSTLKDIVPSIERFADTYKMDCPAALNRL 88
                    +     SIE FADTY +    A+ RL
Sbjct: 81  YLNSQNKEEINKHFQSIEAFADTYNITASNAITRL 115

>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant photosynthetic reaction center, peripheral antenna; HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1 Length = 154

 Score = 39.9 bits (92), Expect = 1e-04
 Identities = 14/52 (26%), Positives = 19/52 (36%), Gaps = 23/52 (44%)

Query: 48 ECQKLIAHFKTLSSTLKDIVPSIERFADTYKMDCPA-ALNRLVTSGVPATVE 98
          E Q L    K L ++LK          D+     PA A+         AT+E
Sbjct: 18 EKQAL----KKLQASLKLYAD------DS----APALAIK--------ATME 47

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 41.4 bits (96), Expect = 1e-04
 Identities = 33/226 (14%), Positives = 68/226 (30%), Gaps = 71/226 (31%)

Query: 6   W----NDKREREMYENFAELYAIIK----------ATEKLE----KAYVRDIISSSEYET 47
           W    N      + E   +L   I           +  KL     +A +R ++ S  YE 
Sbjct: 186 WLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYE- 244

Query: 48  ECQKLIAHFKTLSSTLKDIVPSIERFADTYKMDCPAALNRLVTSGVPATVEHRAAAVA-- 105
            C  L+         L ++     +  + + + C      L+T+        R   V   
Sbjct: 245 NC--LL--------VLLNV--QNAKAWNAFNLSCKI----LLTT--------RFKQVTDF 280

Query: 106 -STTTSAAIVAECVQNFITAMDSLKL-----NMVAVD------QVHPLLSDLLGSLNKLT 153
            S  T+  I  +     +T  +   L     +    D        +P    ++    +  
Sbjct: 281 LSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIR-- 338

Query: 154 ILPPDFEGKTKMKDW----ISRLSKM--GAADELTEQQSRQLHFDL 193
                 +G     +W      +L+ +   + + L   + R++   L
Sbjct: 339 ------DGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRL 378

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	209
2j9w_A	102	VPS28, VPS28-PROV protein; NZF finger, HIV budding	100.0
2j9u_A	96	VPS28, vacuolar protein sorting-associated protein	100.0
2caz_B	155	Vacuolar protein sorting-associated protein VPS28;	100.0
2f6m_B	109	Vacuolar protein sorting-associated protein VPS28;	100.0
2p22_B	118	Vacuolar protein sorting-associated protein 28; en	100.0
2f6m_A	65	Suppressor protein STP22 of temperature-sensitive	89.21

>2j9w_A VPS28, VPS28-PROV protein; NZF finger, HIV budding, protein transport; 1.30A {Xenopus laevis}

Probab=100.00  E-value=5.4e-51  Score=315.18  Aligned_cols=100  Identities=43%  Similarity=0.766  Sum_probs=97.7

Q ss_pred             CCCcchhHHHHhhhhhhhHhhhhccccchhhhhcchHHHHHHhcccCCCCCCCCcchhhHHHHHHHHhcCCcccCCCHHH
Q 028441          106 STTTSAAIVAECVQNFITAMDSLKLNMVAVDQVHPLLSDLLGSLNKLTILPPDFEGKTKMKDWISRLSKMGAADELTEQQ  185 (209)
Q Consensus       106 ~~~~~a~~Iae~t~~FIT~MDaLKLn~~a~DqLhPlL~dL~~slnk~~~lp~dFegk~kl~~Wl~kLn~M~asdeL~eeq  185 (209)
                      ++++++|+|||+||||||+||+|||||+|||||||+|+||+.|+||++.+|+||+||.||++|+++||+|+|+|||+|+|
T Consensus         2 ~~~~~~~~IAe~v~~FIT~mDaLKLn~~a~DqLhPlL~dL~~sl~r~~~lp~dfegk~kv~~Wl~~Ln~M~AsdeL~e~q   81 (102)
T 2j9w_A            2 HMGNLNRCIADIVSLFITVMDKLRLEIRAMDEIQPDLRELMETMNRMSHLPPDFEGREKVSQWLQKLSSMSASDELDDSQ   81 (102)
T ss_dssp             CCCHHHHHHHHHHHHHHHHHHHHHTTCCBHHHHHHHHHHHHHHHHHCTTSCTTCHHHHHHHHHHHHHHTSCTTCBCCHHH
T ss_pred             CccchHHHHHHHHHHHHHHHHHHHhcchhHHhhhhHHHHHHHhcccCCCCCCCCccHHHHHHHHHHHcCCcccccCCHHH
Confidence            35788999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHhHHHHHHHHHhhcC
Q 028441          186 SRQLHFDLESSYNSFMAALP  205 (209)
Q Consensus       186 ~RqllfDle~aY~~F~~~L~  205 (209)
                      +|||+||||+||++|+++|+
T Consensus        82 ~RqllfDle~aY~~F~~~L~  101 (102)
T 2j9w_A           82 VRQMLFDLESAYNAFNRFLH  101 (102)
T ss_dssp             HHHHHHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHHHHHHHhc
Confidence            99999999999999999997

>2j9u_A VPS28, vacuolar protein sorting-associated protein 28; zinc-finger, metal-binding, protein transport; 2.00A {Saccharomyces cerevisiae} SCOP: a.24.28.1 PDB: 2j9v_A 2g3k_A

Probab=100.00  E-value=3.2e-49  Score=302.43  Aligned_cols=94  Identities=54%  Similarity=0.811  Sum_probs=91.8

Q ss_pred             chhHHHHhhhhhhhHhhhhccccchhhhhcchHHHHHHhcccCCCCCCCCcchhhHHHHHHHHhcCCcccCCCHHHHHHH
Q 028441          110 SAAIVAECVQNFITAMDSLKLNMVAVDQVHPLLSDLLGSLNKLTILPPDFEGKTKMKDWISRLSKMGAADELTEQQSRQL  189 (209)
Q Consensus       110 ~a~~Iae~t~~FIT~MDaLKLn~~a~DqLhPlL~dL~~slnk~~~lp~dFegk~kl~~Wl~kLn~M~asdeL~eeq~Rql  189 (209)
                      +||+|||+||||||+||+|||||+|||||||+|+||+.|+||++  |+||+||.||++|+++||+|+|+|||+|+|+|||
T Consensus         3 ~~~~iAe~~~~FIT~mDaLKL~~~a~DqLhP~L~dL~~sl~r~~--~~dfegk~kv~~Wl~~Ln~M~AsdeL~e~q~Rql   80 (96)
T 2j9u_A            3 NAKYVAEATGNFITVMDALKLNYNAKDQLHPLLAELLISINRVT--RDDFENRSKLIDWIVRINKLSIGDTLTETQIREL   80 (96)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHTTCCBHHHHHHHHHHHHHHHHHHC--CCCCTTHHHHHHHHHHHHTSCTTCBCCHHHHHHH
T ss_pred             chHHHHHHHHHHHHHHHHHHhcchhHHhhCchHHHHHHHccCCC--CCCCchHHHHHHHHHHHcCCcccccCCHHHHHHH
Confidence            58999999999999999999999999999999999999999998  8999999999999999999999999999999999


Q ss_pred             HHhHHHHHHHHHhhcC
Q 028441          190 HFDLESSYNSFMAALP  205 (209)
Q Consensus       190 lfDle~aY~~F~~~L~  205 (209)
                      +||||+||++|+++|+
T Consensus        81 lfDle~aY~~F~~~L~   96 (96)
T 2j9u_A           81 LFDLELAYKSFYALLD   96 (96)
T ss_dssp             HHHHHHHHHHHHHHC-
T ss_pred             HHHHHHHHHHHHHHcC
Confidence            9999999999999985

>2caz_B Vacuolar protein sorting-associated protein VPS28; protein transport, ESCRT, MVB, multivesicular bodies, endosome, lysosome, PH domain, protein sorting; 3.6A {Saccharomyces cerevisiae} SCOP: a.2.17.2

Probab=100.00  E-value=5.3e-45  Score=298.69  Aligned_cols=103  Identities=33%  Similarity=0.646  Sum_probs=90.9

Q ss_pred             CcccccC---ChhHHHHHHhHHHHHHHHHHHHHHHHhhhcCCCChhhHHHHHHHHHHHHHHHHH-----HHhcccCCHHH
Q 028441            1 MEVKLWN---DKREREMYENFAELYAIIKATEKLEKAYVRDIISSSEYETECQKLIAHFKTLSS-----TLKDIVPSIER   72 (209)
Q Consensus         1 ~EV~L~~---~~~eRe~~e~lAelYSII~tle~LEkAyirD~I~~~eYt~~c~rLl~Qyk~~~~-----~v~~~~~~l~~   72 (209)
                      +||+||+   |++||++||+||||||||+|||+||||||||+|+++|||++|+|||+|||++++     .|.+.||||++
T Consensus        28 eEVkL~~~~~s~~ERe~yE~LAeLYSII~tLE~LEKAYikD~It~~eYT~aC~rLL~QYKt~~~~~~~~~v~~~~~dle~  107 (155)
T 2caz_B           28 DEVPLFDNSITSKDKEVIETLSEIYSIVITLDHVEKAYLKDSIDDTQYTNTVDKLLKQFKVYLNSQNKEEINKHFQSIEA  107 (155)
T ss_dssp             ---CCSCTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTSSCHHHHHHHHHHHHHHHHHHHTSSSCHHHHHHTCSHHH
T ss_pred             ceeehhcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHhcchhHHHHHHCCCHHH
Confidence            6999999   999999999999999999999999999999999999999999999999999999     78888999999


Q ss_pred             HHHHhcCCchHHhhhhhhcCCCceeecccccc
Q 028441           73 FADTYKMDCPAALNRLVTSGVPATVEHRAAAV  104 (209)
Q Consensus        73 F~~~y~l~cp~A~~RL~~~G~PaTveh~~~~~  104 (209)
                      |+++|+|+||+|++|| ++|+|+||+|+++..
T Consensus       108 F~~~Y~l~CP~A~~RL-~~GvPaTve~~~~~~  138 (155)
T 2caz_B          108 FCDTYNITASNAITRL-ERGIPITAEHAISTT  138 (155)
T ss_dssp             HHHHTTCCCTTHHHHH-HSCCSCC--------
T ss_pred             HHHHhCCcChHHHHHH-hcCCCchhccCCCCC
Confidence            9999999999999999 999999999987654

>2f6m_B Vacuolar protein sorting-associated protein VPS28; endosomes, trafficking complex, vacuole protei sorting, ESCRT protein complexes; HET: DDQ; 2.10A {Saccharomyces cerevisiae} SCOP: a.2.17.2 PDB: 2f66_B

Probab=100.00  E-value=1.6e-41  Score=265.03  Aligned_cols=91  Identities=34%  Similarity=0.656  Sum_probs=89.0

Q ss_pred             CcccccC---ChhHHHHHHhHHHHHHHHHHHHHHHHhhhcCCCChhhHHHHHHHHHHHHHHHHH-----HHhcccCCHHH
Q 028441            1 MEVKLWN---DKREREMYENFAELYAIIKATEKLEKAYVRDIISSSEYETECQKLIAHFKTLSS-----TLKDIVPSIER   72 (209)
Q Consensus         1 ~EV~L~~---~~~eRe~~e~lAelYSII~tle~LEkAyirD~I~~~eYt~~c~rLl~Qyk~~~~-----~v~~~~~~l~~   72 (209)
                      +||+||+   |++||++||+||+|||||+|||+||||||||+|+++|||++|+|||+|||++++     .|++.||||++
T Consensus        11 ~EV~L~~~~~~~~eRe~ye~LAelYSII~tle~LEkAyikD~It~~eYt~~c~rLL~QyKt~~~~~~~~~v~~~~~~le~   90 (109)
T 2f6m_B           11 DEVPLFDNSITSKDKEVIETLSEIYSIVITLDHVEKAYLKDSIDDTQYTNTVDKLLKQFKVYLNSQNKEEINKHFQSIEA   90 (109)
T ss_dssp             SCCCSSCTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHHHTCTTTTHHHHHHHHHHH
T ss_pred             hhhhhhhccCCHHHHHHHHhHHHHHHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHhcccHHHHHHHCCCHHH
Confidence            6999999   999999999999999999999999999999999999999999999999999999     78888999999


Q ss_pred             HHHHhcCCchHHhhhhhhcC
Q 028441           73 FADTYKMDCPAALNRLVTSG   92 (209)
Q Consensus        73 F~~~y~l~cp~A~~RL~~~G   92 (209)
                      |+++|+|+||+|++|| ++|
T Consensus        91 F~~~y~l~cp~A~~RL-~~G  109 (109)
T 2f6m_B           91 FADTYNITASNAITRL-ERG  109 (109)
T ss_dssp             HHHHTTCCCHHHHHHH-HHC
T ss_pred             HHHHhCCCChHHHHHH-hCC
Confidence            9999999999999999 987

>2p22_B Vacuolar protein sorting-associated protein 28; endosome, trafficking complex, VPS23, VPS28, VPS37, MVB12; 2.70A {Saccharomyces cerevisiae}

Probab=100.00  E-value=4.3e-41  Score=265.60  Aligned_cols=91  Identities=34%  Similarity=0.656  Sum_probs=69.7

Q ss_pred             CcccccC---ChhHHHHHHhHHHHHHHHHHHHHHHHhhhcCCCChhhHHHHHHHHHHHHHHHHH-----HHhcccCCHHH
Q 028441            1 MEVKLWN---DKREREMYENFAELYAIIKATEKLEKAYVRDIISSSEYETECQKLIAHFKTLSS-----TLKDIVPSIER   72 (209)
Q Consensus         1 ~EV~L~~---~~~eRe~~e~lAelYSII~tle~LEkAyirD~I~~~eYt~~c~rLl~Qyk~~~~-----~v~~~~~~l~~   72 (209)
                      +||+||+   |++||++||+||+|||||+|||+||||||||+|+++|||++|+|||+|||++++     .|++.||||++
T Consensus        20 ~EV~L~~~~~~~~eRe~ye~LAeLYSII~tle~LEKAyikD~It~~eYt~~C~rLL~QYKt~~~~~~~~~v~~~~~dle~   99 (118)
T 2p22_B           20 DEVPLFDNSITSKDKEVIETLSEIYSIVITLDHVEKAYLKDSIDDTQYTNTVDKLLKQFKVYLNSQNKEEINKHFQSIEA   99 (118)
T ss_dssp             SCCCSCCSSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTSSCHHHHHHHHHHHHHHHHHHHHTTTTTC----------
T ss_pred             chhhhhcccCCHHHHHHHHhHHHHHHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHhcccHHHHHHHCCCHHH
Confidence            6999999   999999999999999999999999999999999999999999999999999999     78788999999


Q ss_pred             HHHHhcCCchHHhhhhhhcC
Q 028441           73 FADTYKMDCPAALNRLVTSG   92 (209)
Q Consensus        73 F~~~y~l~cp~A~~RL~~~G   92 (209)
                      |+++|+|+||+|++|| ++|
T Consensus       100 F~~~y~l~cP~A~~RL-~~G  118 (118)
T 2p22_B          100 FADTYNITASNAITRL-ERG  118 (118)
T ss_dssp             ---------CCHHHHH-TC-
T ss_pred             HHHHhCCCChHHHHHH-hCC
Confidence            9999999999999999 887

>2f6m_A Suppressor protein STP22 of temperature-sensitive factor receptor and arginine permease...; endosomes, trafficking complex, vacuole protei sorting, ESCRT protein complexes; HET: DDQ; 2.10A {Saccharomyces cerevisiae} SCOP: a.2.17.1 PDB: 2f66_A*

Probab=89.21  E-value=1.2  Score=31.46  Aligned_cols=46  Identities=20%  Similarity=0.317  Sum_probs=42.5

Q ss_pred             ChhHHHHHHhHHHHHHHHHHHHHHHHhhhcCCCChhhHHHHHHHHH
Q 028441            8 DKREREMYENFAELYAIIKATEKLEKAYVRDIISSSEYETECQKLI   53 (209)
Q Consensus         8 ~~~eRe~~e~lAelYSII~tle~LEkAyirD~I~~~eYt~~c~rLl   53 (209)
                      +|..++.||-.|+=.+|==|+.+|.+|.-++.|+-+.|-.....|-
T Consensus         2 ~pl~~Qll~l~Aed~AieDaiy~L~~aL~~g~I~l~~ylK~vR~La   47 (65)
T 2f6m_A            2 TDGLNQLYNLVAQDYALTDTIEALSRMLHRGTIPLDTFVKQGRELA   47 (65)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHH
T ss_pred             ChHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHH
Confidence            6788999999999999999999999999999999999998876664

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	209
d2j9ua1	94	a.24.28.1 (A:148-241) Vacuolar protein sorting-ass	9e-46
d2f6mb1	104	a.2.17.2 (B:15-118) Vacuolar protein sorting-assoc	4e-35

>d2j9ua1 a.24.28.1 (A:148-241) Vacuolar protein sorting-associated protein 28, VPS28 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 94

class: All alpha proteins
fold: Four-helical up-and-down bundle
superfamily: VPS28 C-terminal domain-like
family: VPS28 C-terminal domain-like
domain: Vacuolar protein sorting-associated protein 28, VPS28
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score =  144 bits (365), Expect = 9e-46
 Identities = 51/95 (53%), Positives = 67/95 (70%), Gaps = 2/95 (2%)

Query: 110 SAAIVAECVQNFITAMDSLKLNMVAVDQVHPLLSDLLGSLNKLTILPPDFEGKTKMKDWI 169
           +A  VAE   NFIT MD+LKLN  A DQ+HPLL++LL S+N++T    DFE ++K+ DWI
Sbjct: 2   NAKYVAEATGNFITVMDALKLNYNAKDQLHPLLAELLISINRVT--RDDFENRSKLIDWI 59

Query: 170 SRLSKMGAADELTEQQSRQLHFDLESSYNSFMAAL 204
            R++K+   D LTE Q R+L FDLE +Y SF A L
Sbjct: 60  VRINKLSIGDTLTETQIRELLFDLELAYKSFYALL 94

>d2f6mb1 a.2.17.2 (B:15-118) Vacuolar protein sorting-associated protein 28, VPS28 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 104

class: All alpha proteins
fold: Long alpha-hairpin
superfamily: Endosomal sorting complex assembly domain
family: VPS28 N-terminal domain
domain: Vacuolar protein sorting-associated protein 28, VPS28
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score =  117 bits (296), Expect = 4e-35
 Identities = 30/95 (31%), Positives = 51/95 (53%), Gaps = 8/95 (8%)

Query: 2   EVKLWND---KREREMYENFAELYAIIKATEKLEKAYVRDIISSSEYETECQKLIAHFKT 58
           EV L+++    +++E+ E  +E+Y+I+   + +EKAY++D I  ++Y     KL+  FK 
Sbjct: 7   EVPLFDNSITSKDKEVIETLSEIYSIVITLDHVEKAYLKDSIDDTQYTNTVDKLLKQFKV 66

Query: 59  L-----SSTLKDIVPSIERFADTYKMDCPAALNRL 88
                    +     SIE FADTY +    A+ RL
Sbjct: 67  YLNSQNKEEINKHFQSIEAFADTYNITASNAITRL 101

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	209
d2j9ua1	94	Vacuolar protein sorting-associated protein 28, VP	100.0
d2f6mb1	104	Vacuolar protein sorting-associated protein 28, VP	100.0

>d2j9ua1 a.24.28.1 (A:148-241) Vacuolar protein sorting-associated protein 28, VPS28 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: Four-helical up-and-down bundle
superfamily: VPS28 C-terminal domain-like
family: VPS28 C-terminal domain-like
domain: Vacuolar protein sorting-associated protein 28, VPS28
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=3.8e-49  Score=298.80  Aligned_cols=93  Identities=55%  Similarity=0.823  Sum_probs=91.1

Q ss_pred             chhHHHHhhhhhhhHhhhhccccchhhhhcchHHHHHHhcccCCCCCCCCcchhhHHHHHHHHhcCCcccCCCHHHHHHH
Q 028441          110 SAAIVAECVQNFITAMDSLKLNMVAVDQVHPLLSDLLGSLNKLTILPPDFEGKTKMKDWISRLSKMGAADELTEQQSRQL  189 (209)
Q Consensus       110 ~a~~Iae~t~~FIT~MDaLKLn~~a~DqLhPlL~dL~~slnk~~~lp~dFegk~kl~~Wl~kLn~M~asdeL~eeq~Rql  189 (209)
                      +||+|||+||||||+|||||||++|||||||+|+||+.+|||++  |+||+||.||++|+++||+|+|+|||+|+|+|||
T Consensus         2 ~ak~Vae~~~~FIT~mDaLkL~~~a~DqLhPlL~dL~~slnrl~--~~dfegk~kv~~Wl~~Ln~M~AsdeL~e~q~Rq~   79 (94)
T d2j9ua1           2 NAKYVAEATGNFITVMDALKLNYNAKDQLHPLLAELLISINRVT--RDDFENRSKLIDWIVRINKLSIGDTLTETQIREL   79 (94)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHTTCCBHHHHHHHHHHHHHHHHHHC--CCCCTTHHHHHHHHHHHHTSCTTCBCCHHHHHHH
T ss_pred             chhHHHHHHHHHHHHHHHHhhcCcchhhhchhHHHHHHHHHhcC--ccccchHHHHHHHHHHHhCCchhhhcCHHHHHHH
Confidence            68999999999999999999999999999999999999999996  6999999999999999999999999999999999


Q ss_pred             HHhHHHHHHHHHhhc
Q 028441          190 HFDLESSYNSFMAAL  204 (209)
Q Consensus       190 lfDle~aY~~F~~~L  204 (209)
                      +||||+||++|+++|
T Consensus        80 lfDle~aY~~F~~~L   94 (94)
T d2j9ua1          80 LFDLELAYKSFYALL   94 (94)
T ss_dssp             HHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHHhC
Confidence            999999999999987

>d2f6mb1 a.2.17.2 (B:15-118) Vacuolar protein sorting-associated protein 28, VPS28 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: Long alpha-hairpin
superfamily: Endosomal sorting complex assembly domain
family: VPS28 N-terminal domain
domain: Vacuolar protein sorting-associated protein 28, VPS28
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=1e-41  Score=262.20  Aligned_cols=91  Identities=34%  Similarity=0.664  Sum_probs=87.0

Q ss_pred             CcccccCC---hhHHHHHHhHHHHHHHHHHHHHHHHhhhcCCCChhhHHHHHHHHHHHHHHHHH-----HHhcccCCHHH
Q 028441            1 MEVKLWND---KREREMYENFAELYAIIKATEKLEKAYVRDIISSSEYETECQKLIAHFKTLSS-----TLKDIVPSIER   72 (209)
Q Consensus         1 ~EV~L~~~---~~eRe~~e~lAelYSII~tle~LEkAyirD~I~~~eYt~~c~rLl~Qyk~~~~-----~v~~~~~~l~~   72 (209)
                      |||+||+|   ++||++||+||+|||||+|||+||||||||+|+++|||++|+|||+|||++++     .+++.|+||++
T Consensus         6 eEV~l~~n~~t~~eRe~yd~LAelysII~tLe~LEkAyikD~It~~eYt~~c~rLl~QyK~~~~~~~~~~v~~~f~~le~   85 (104)
T d2f6mb1           6 DEVPLFDNSITSKDKEVIETLSEIYSIVITLDHVEKAYLKDSIDDTQYTNTVDKLLKQFKVYLNSQNKEEINKHFQSIEA   85 (104)
T ss_dssp             SCCCSSCTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHHHTCTTTTHHHHHHHHHHH
T ss_pred             HHHHHHhccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHHHHHhhhHHhhhccCCHHH
Confidence            79999996   89999999999999999999999999999999999999999999999999997     35667999999


Q ss_pred             HHHHhcCCchHHhhhhhhcC
Q 028441           73 FADTYKMDCPAALNRLVTSG   92 (209)
Q Consensus        73 F~~~y~l~cp~A~~RL~~~G   92 (209)
                      ||++|+|+||+|++|| ++|
T Consensus        86 F~~~y~l~cP~A~~RL-~~G  104 (104)
T d2f6mb1          86 FADTYNITASNAITRL-ERG  104 (104)
T ss_dssp             HHHHTTCCCHHHHHHH-HHC
T ss_pred             HHHHHCcCChHHHHHH-hcC
Confidence            9999999999999999 988