Citrus Sinensis ID: 028462

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------21
MKTEELMRMKCEFLDGFDASLREQTPPDIHLRPCYGPPLPAHKAVLYARSTILVHPPPTFDAQLMRKYWSLGASSCETEIVNLPISREELEALLDFLYHGSLDPERTEKHIAVLFFSAWNFDILYLSEFCAHHILSSLKPSNALNAFKNAVGCSHRALLEAVLDFIVENMEEIAFSKEYKQFVRAFPNHSVRITQAFFMYGSNKRIKT
cccHHHHHHHHHHHHHHHHHHHccccccEEEEccccccccHHHHHHcccccccccccccccccccccccccccccccccEEcccccHHHHHHHHHccccccccccHHHHHHHHHHHHHHccccHHHHHHHHHHHHHcccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHccHHHHHHHHHcccHHHHHHHHHHcccccccccc
cccHHHcccHHHHHHHHHHHHHHccccEEEEEEccccccHHHHHHHHHccHHHHHHHHccHHHHHcHHHHHHccccccEEEEccccHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHcccHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHccccHHHHHHHcHHHHHHHHHHHHHccccccccc
MKTEELMRMKCEFLdgfdaslreqtppdihlrpcygpplpahKAVLYARStilvhppptfdAQLMRKYWSlgassceteivnlpISREELEALLDFLyhgsldpertEKHIAVLFFSAWNFDILYLSEFCAHHilsslkpsnalNAFKNAVGCSHRALLEAVLDFIVENMEEIAFSKEYKQFVrafpnhsvRITQAFFMygsnkrikt
MKTEELMRMKCEFLDGFDASLREQTPPDIHLRPCYGPPLPAHKAVLYARSTILVHPPPTFDAQLMRKYWSLGASSCETEIVNLPISREELEALLDFLYHGSLDPERTEKHIAVLFFSAWNFDILYLSEFCAHHILSSLKPSNALNAFKNAVGCSHRALLEAVLDFIVENMEEIAFSKEYKQFVRAFPNHSVRITQaffmygsnkrikt
MKTEELMRMKCEFLDGFDASLREQTPPDIHLRPCYGPPLPAHKAVLYARSTILVHPPPTFDAQLMRKYWSLGASSCETEIVNLPISREELEALLDFLYHGSLDPERTEKHIAVLFFSAWNFDILYLSEFCAHHILSSLKPSNALNAFKNAVGCSHRALLEAVLDFIVENMEEIAFSKEYKQFVRAFPNHSVRITQAFFMYGSNKRIKT
**********CEFLDGFDASL*****PDIHLRPCYGPPLPAHKAVLYARSTILVHPPPTFDAQLMRKYWSLGASSCETEIVNLPISREELEALLDFLYHGSLDPERTEKHIAVLFFSAWNFDILYLSEFCAHHILSSLKPSNALNAFKNAVGCSHRALLEAVLDFIVENMEEIAFSKEYKQFVRAFPNHSVRITQAFFMYG*******
*************LDGFDASLREQTPPDIHLRPCYGPPLPAHKAVLYARSTILVHPPPTFDAQL***************IVNLPISREELEALLDFLYHGSLDPERTEKHIAVLFFSAWNFDILYLSEFCAHHILSSLKPSNALNAFKNAVGCSHRALLEAVLDFIVENMEEIAFSKEYKQFVRAFPNHSVRITQAFFM*********
MKTEELMRMKCEFLDGFDASLREQTPPDIHLRPCYGPPLPAHKAVLYARSTILVHPPPTFDAQLMRKYWSLGASSCETEIVNLPISREELEALLDFLYHGSLDPERTEKHIAVLFFSAWNFDILYLSEFCAHHILSSLKPSNALNAFKNAVGCSHRALLEAVLDFIVENMEEIAFSKEYKQFVRAFPNHSVRITQAFFMYGSNKRIKT
******MRMKCEFLDGFDASLREQTPPDIHLRPCYGPPLPAHKAVLYARSTILVHPPPTFDAQLMRKYWSLGASSCETEIVNLPISREELEALLDFLYHGSLDPERTEKHIAVLFFSAWNFDILYLSEFCAHHILSSLKPSNALNAFKNAVGCSHRALLEAVLDFIVENMEEIAFSKEYKQFVRAFPNHSVRITQAFFMYG*******
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MKTEELMRMKCEFLDGFDASLREQTPPDIHLRPCYGPPLPAHKAVLYARSTILVHPPPTFDAQLMRKYWSLGASSCETEIVNLPISREELEALLDFLYHGSLDPERTEKHIAVLFFSAWNFDILYLSEFCAHHILSSLKPSNALNAFKNAVGCSHRALLEAVLDFIVENMEEIAFSKEYKQFVRAFPNHSVRITQAFFMYGSNKRIKT
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query208 2.2.26 [Sep-21-2011]
Q9LYL9282 BTB/POZ domain-containing yes no 0.913 0.673 0.349 3e-26
Q9LQ95207 BTB/POZ domain-containing no no 0.831 0.835 0.335 2e-20
O22891165 Putative BTB/POZ domain-c no no 0.596 0.751 0.311 6e-10
Q9SJ29215 Putative BTB/POZ domain-c no no 0.552 0.534 0.35 8e-10
Q6DBN1243 BTB/POZ domain-containing no no 0.692 0.592 0.284 7e-09
O81432192 Putative BTB/POZ domain-c no no 0.841 0.911 0.298 1e-07
O22890209 Putative BTB/POZ domain-c no no 0.884 0.880 0.326 5e-07
Q9LV63224 BTB/POZ domain-containing no no 0.836 0.776 0.276 1e-05
Q08CL3 601 Kelch repeat and BTB doma yes no 0.682 0.236 0.273 4e-05
Q5R7B8 609 Kelch-like protein 20 OS= yes no 0.605 0.206 0.294 0.0001
>sp|Q9LYL9|Y3623_ARATH BTB/POZ domain-containing protein At3g56230 OS=Arabidopsis thaliana GN=At3g56230 PE=2 SV=1 Back     alignment and function desciption
 Score =  118 bits (295), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 73/209 (34%), Positives = 115/209 (55%), Gaps = 19/209 (9%)

Query: 2   KTEELMRMKCEFLDGFDASLREQTPPDIHLRPCY-GPPLPAHKAVLYARSTILVHPPPTF 60
           +TEE  + +  FL  F +  +EQ   DI L+P   GPP+PAH+A+L ++S I  +     
Sbjct: 86  ETEEEQKKRIVFLSSFVSGFKEQLHADILLKPGDDGPPIPAHRALLASKSEIFKNI---- 141

Query: 61  DAQLMRKYWSLGASSCETE----IVNLPISREELEALLDFLYHGSLDPERTEKHIAVLFF 116
                     L +  C+T     I    ++ E+L+ALL+FLY G+L  ++ EK++  LF 
Sbjct: 142 ----------LDSDGCKTAPEYAITLQELNSEQLQALLEFLYTGTLASDKLEKNVYALFI 191

Query: 117 SAWNFDILYLSEFCAHHILSSLKPSNALNAFKNAVGCSHRALLEAVLDFIVENMEEIAFS 176
           +A  + I YL E C  ++LSSL  S+ LN    +   S + L EA + F+V NM+++ FS
Sbjct: 192 AADKYMIHYLQELCEQYMLSSLDISSVLNVLDVSDLGSSKTLKEACVGFVVRNMDDVVFS 251

Query: 177 KEYKQFVRAFPNHSVRITQAFFMYGSNKR 205
            +Y+ F +   +  V IT+AF M   +KR
Sbjct: 252 DKYEPFSQKNQHLCVEITRAFLMETRSKR 280
May act as a substrate-specific adapter of an E3 ubiquitin-protein ligase complex (CUL3-RBX1-BTB) which mediates the ubiquitination and subsequent proteasomal degradation of target proteins.
Arabidopsis thaliana (taxid: 3702)
>sp|Q9LQ95|Y1164_ARATH BTB/POZ domain-containing protein At1g01640 OS=Arabidopsis thaliana GN=At1g01640 PE=1 SV=1 Back     alignment and function description
>sp|O22891|Y2044_ARATH Putative BTB/POZ domain-containing protein At2g40440 OS=Arabidopsis thaliana GN=At2g40440 PE=3 SV=2 Back     alignment and function description
>sp|Q9SJ29|Y2533_ARATH Putative BTB/POZ domain-containing protein At2g05330 OS=Arabidopsis thaliana GN=At2g05330 PE=3 SV=1 Back     alignment and function description
>sp|Q6DBN1|Y4845_ARATH BTB/POZ domain-containing protein At4g08455 OS=Arabidopsis thaliana GN=At4g08455 PE=1 SV=1 Back     alignment and function description
>sp|O81432|Y4409_ARATH Putative BTB/POZ domain-containing protein At4g04090 OS=Arabidopsis thaliana GN=At4g04090 PE=3 SV=1 Back     alignment and function description
>sp|O22890|Y2045_ARATH Putative BTB/POZ domain-containing protein At2g40450 OS=Arabidopsis thaliana GN=At2g40450 PE=3 SV=1 Back     alignment and function description
>sp|Q9LV63|Y5851_ARATH BTB/POZ domain-containing protein At5g48510 OS=Arabidopsis thaliana GN=At5g48510 PE=1 SV=1 Back     alignment and function description
>sp|Q08CL3|KBTB8_DANRE Kelch repeat and BTB domain-containing protein 8 OS=Danio rerio GN=kbtbd8 PE=2 SV=1 Back     alignment and function description
>sp|Q5R7B8|KLH20_PONAB Kelch-like protein 20 OS=Pongo abelii GN=KLHL20 PE=2 SV=3 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query208
224128746189 predicted protein [Populus trichocarpa] 0.860 0.947 0.401 3e-27
359486352270 PREDICTED: BTB/POZ domain-containing pro 0.918 0.707 0.372 1e-24
297736526281 unnamed protein product [Vitis vinifera] 0.918 0.679 0.372 1e-24
15228868282 BTB/POZ domain-containing protein [Arabi 0.913 0.673 0.349 2e-24
297820382276 hypothetical protein ARALYDRAFT_348708 [ 0.913 0.688 0.354 2e-24
449441572266 PREDICTED: BTB/POZ domain-containing pro 0.918 0.718 0.373 6e-24
255559613267 protein binding protein, putative [Ricin 0.932 0.726 0.380 9e-22
294462007 313 unknown [Picea sitchensis] 0.826 0.549 0.342 1e-20
15223447207 BTB/POZ domain-containing protein [Arabi 0.831 0.835 0.335 9e-19
33589788207 At3g01790 [Arabidopsis thaliana] gi|1107 0.831 0.835 0.335 1e-18
>gi|224128746|ref|XP_002328956.1| predicted protein [Populus trichocarpa] gi|222839190|gb|EEE77541.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
 Score =  127 bits (319), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 77/192 (40%), Positives = 113/192 (58%), Gaps = 13/192 (6%)

Query: 10  KCEFLDGFDASLREQTPPDIHLRPCY-GPPLPAHKAVLYARSTILVHPPPTFDAQLMRKY 68
           K  FL  F A  ++Q   DI L+P   GP + AH+A+L ARS I       F   L    
Sbjct: 6   KISFLSSFIALFKDQILTDIQLKPGNDGPSISAHRALLAARSEI-------FKNMLDSDA 58

Query: 69  WSLGASSCETEIVNLP-ISREELEALLDFLYHGSLDPERTEKHIAVLFFSAWNFDILYLS 127
           +   AS    + + LP ++ +ELE+LL+FLY G+L  E+ EKH+  L  +A  +DI YL 
Sbjct: 59  YKAPAS----DTIMLPELNHQELESLLEFLYSGNLPSEKLEKHVYSLTLAADKYDIPYLL 114

Query: 128 EFCAHHILSSLKPSNALNAFKNAVGCSHRALLEAVLDFIVENMEEIAFSKEYKQFVRAFP 187
           +FC  H+L  L  SNAL+  + +  CS++ L E  L+FIV+NME++ FS +Y+ FV   P
Sbjct: 115 KFCERHMLRFLNSSNALDVLEISDTCSNKTLKETALNFIVKNMEDVVFSTKYEAFVPENP 174

Query: 188 NHSVRITQAFFM 199
           + +V+IT+A  M
Sbjct: 175 HLAVQITRALLM 186

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|359486352|ref|XP_003633433.1| PREDICTED: BTB/POZ domain-containing protein At3g56230-like [Vitis vinifera] Back     alignment and taxonomy information
>gi|297736526|emb|CBI25397.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|15228868|ref|NP_191182.1| BTB/POZ domain-containing protein [Arabidopsis thaliana] gi|75264422|sp|Q9LYL9.1|Y3623_ARATH RecName: Full=BTB/POZ domain-containing protein At3g56230 gi|7572921|emb|CAB87422.1| putative protein [Arabidopsis thaliana] gi|45825155|gb|AAS77485.1| At3g56230 [Arabidopsis thaliana] gi|51970740|dbj|BAD44062.1| putative protein [Arabidopsis thaliana] gi|332645978|gb|AEE79499.1| BTB/POZ domain-containing protein [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|297820382|ref|XP_002878074.1| hypothetical protein ARALYDRAFT_348708 [Arabidopsis lyrata subsp. lyrata] gi|297323912|gb|EFH54333.1| hypothetical protein ARALYDRAFT_348708 [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information
>gi|449441572|ref|XP_004138556.1| PREDICTED: BTB/POZ domain-containing protein At3g56230-like [Cucumis sativus] gi|449499220|ref|XP_004160755.1| PREDICTED: BTB/POZ domain-containing protein At3g56230-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|255559613|ref|XP_002520826.1| protein binding protein, putative [Ricinus communis] gi|223539957|gb|EEF41535.1| protein binding protein, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|294462007|gb|ADE76559.1| unknown [Picea sitchensis] Back     alignment and taxonomy information
>gi|15223447|ref|NP_171670.1| BTB/POZ domain-containing protein [Arabidopsis thaliana] gi|30678163|ref|NP_849574.1| BTB/POZ domain-containing protein [Arabidopsis thaliana] gi|75311457|sp|Q9LQ95.1|Y1164_ARATH RecName: Full=BTB/POZ domain-containing protein At1g01640 gi|8671833|gb|AAF78396.1|AC009273_2 Contains similarity to the speckle-type POZ protein from Homo sapiens gb|AJ000644. It contains a BTB/POZ domain PF|00651 [Arabidopsis thaliana] gi|332189194|gb|AEE27315.1| BTB/POZ domain-containing protein [Arabidopsis thaliana] gi|332189195|gb|AEE27316.1| BTB/POZ domain-containing protein [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|33589788|gb|AAQ22660.1| At3g01790 [Arabidopsis thaliana] gi|110739209|dbj|BAF01519.1| hypothetical protein [Arabidopsis thaliana] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query208
TAIR|locus:2078421282 AT3G56230 [Arabidopsis thalian 0.927 0.684 0.349 7.6e-25
TAIR|locus:2198140207 AT1G01640 [Arabidopsis thalian 0.822 0.826 0.340 1e-20
TAIR|locus:2061873209 AT2G40450 [Arabidopsis thalian 0.841 0.837 0.342 9.8e-16
TAIR|locus:2051294215 AT2G05330 [Arabidopsis thalian 0.552 0.534 0.35 5e-12
TAIR|locus:2166066224 AT5G48510 [Arabidopsis thalian 0.841 0.781 0.280 5.8e-11
TAIR|locus:2136622192 AT4G04090 [Arabidopsis thalian 0.846 0.916 0.310 2e-10
TAIR|locus:504955382243 AT4G08455 [Arabidopsis thalian 0.706 0.604 0.283 2e-09
MGI|MGI:2444855 604 Klhl20 "kelch-like 20" [Mus mu 0.605 0.208 0.294 0.00015
UNIPROTKB|F1NMM8 609 KLHL20 "Kelch-like protein 20" 0.605 0.206 0.294 0.00015
UNIPROTKB|Q08DK3 609 KLHL20 "Kelch-like protein 20" 0.605 0.206 0.294 0.00015
TAIR|locus:2078421 AT3G56230 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 283 (104.7 bits), Expect = 7.6e-25, P = 7.6e-25
 Identities = 72/206 (34%), Positives = 115/206 (55%)

Query:     2 KTEELMRMKCEFLDGFDASLREQTPPDIHLRPCY-GPPLPAHKAVLYARSTILVHPPPTF 60
             +TEE  + +  FL  F +  +EQ   DI L+P   GPP+PAH+A+L ++S I  +     
Sbjct:    86 ETEEEQKKRIVFLSSFVSGFKEQLHADILLKPGDDGPPIPAHRALLASKSEIFKN---IL 142

Query:    61 DAQLMRKYWSLGASSCETEIVNLP-ISREELEALLDFLYHGSLDPERTEKHIAVLFFSAW 119
             D+         G  +     + L  ++ E+L+ALL+FLY G+L  ++ EK++  LF +A 
Sbjct:   143 DSD--------GCKTAPEYAITLQELNSEQLQALLEFLYTGTLASDKLEKNVYALFIAAD 194

Query:   120 NFDILYLSEFCAHHILSSLKPSNALNAFKNAVGCSHRALLEAVLDFIVENMEEIAFSKEY 179
              + I YL E C  ++LSSL  S+ LN    +   S + L EA + F+V NM+++ FS +Y
Sbjct:   195 KYMIHYLQELCEQYMLSSLDISSVLNVLDVSDLGSSKTLKEACVGFVVRNMDDVVFSDKY 254

Query:   180 KQFVRAFPNHSVRITQAFFMYGSNKR 205
             + F +   +  V IT+AF M   +KR
Sbjct:   255 EPFSQKNQHLCVEITRAFLMETRSKR 280
GO:0005634 "nucleus" evidence=ISM
GO:0008150 "biological_process" evidence=ND
GO:0010413 "glucuronoxylan metabolic process" evidence=RCA
GO:0045492 "xylan biosynthetic process" evidence=RCA
TAIR|locus:2198140 AT1G01640 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2061873 AT2G40450 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2051294 AT2G05330 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2166066 AT5G48510 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2136622 AT4G04090 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:504955382 AT4G08455 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
MGI|MGI:2444855 Klhl20 "kelch-like 20" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
UNIPROTKB|F1NMM8 KLHL20 "Kelch-like protein 20" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
UNIPROTKB|Q08DK3 KLHL20 "Kelch-like protein 20" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query208
pfam00651101 pfam00651, BTB, BTB/POZ domain 9e-06
smart0022597 smart00225, BTB, Broad-Complex, Tramtrack and Bric 6e-04
>gnl|CDD|216043 pfam00651, BTB, BTB/POZ domain Back     alignment and domain information 
 Score = 42.6 bits (101), Expect = 9e-06
 Identities = 32/119 (26%), Positives = 46/119 (38%), Gaps = 18/119 (15%)

Query: 17  FDASLREQTPPDIHLRPCYGPPLPAHKAVLYARSTILVHPPPTFDAQLMRKYWSLGASSC 76
            +         D+ L         AHKAVL A S         F A            + 
Sbjct: 1   LNELRENGELCDVTLV-VGDKEFHAHKAVLAACSPY-------FKALF--------TGNK 44

Query: 77  ETEIVNLPISREELEALLDFLYHGSLDPERTEKHIAVLFFSAWNFDILYLSEFCAHHIL 135
           E EI    +S E+ EALL+F+Y G L+   TE+++  L   A    I  L + C   ++
Sbjct: 45  EVEITLEDVSPEDFEALLEFIYTGKLEI--TEENVDDLLALADKLQIPALIDKCEEFLI 101

The BTB (for BR-C, ttk and bab) or POZ (for Pox virus and Zinc finger) domain is present near the N-terminus of a fraction of zinc finger (pfam00096) proteins and in proteins that contain the pfam01344 motif such as Kelch and a family of pox virus proteins. The BTB/POZ domain mediates homomeric dimerisation and in some instances heteromeric dimerisation. The structure of the dimerised PLZF BTB/POZ domain has been solved and consists of a tightly intertwined homodimer. The central scaffolding of the protein is made up of a cluster of alpha-helices flanked by short beta-sheets at both the top and bottom of the molecule. POZ domains from several zinc finger proteins have been shown to mediate transcriptional repression and to interact with components of histone deacetylase co-repressor complexes including N-CoR and SMRT. The POZ or BTB domain is also known as BR-C/Ttk or ZiN. Length = 101
>gnl|CDD|197585 smart00225, BTB, Broad-Complex, Tramtrack and Bric a brac Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 208
PHA02713 557 hypothetical protein; Provisional 100.0
PHA02790 480 Kelch-like protein; Provisional 100.0
KOG4441 571 consensus Proteins containing BTB/POZ and Kelch do 99.98
PHA03098 534 kelch-like protein; Provisional 99.97
KOG4350 620 consensus Uncharacterized conserved protein, conta 99.93
KOG2075 521 consensus Topoisomerase TOP1-interacting protein B 99.86
PF00651111 BTB: BTB/POZ domain; InterPro: IPR013069 The BTB ( 99.85
KOG4591280 consensus Uncharacterized conserved protein, conta 99.83
KOG4682 488 consensus Uncharacterized conserved protein, conta 99.79
smart0022590 BTB Broad-Complex, Tramtrack and Bric a brac. Doma 99.71
KOG0783 1267 consensus Uncharacterized conserved protein, conta 99.58
KOG0511516 consensus Ankyrin repeat protein [General function 98.68
KOG0783 1267 consensus Uncharacterized conserved protein, conta 98.63
KOG2838401 consensus Uncharacterized conserved protein, conta 98.31
KOG2716230 consensus Polymerase delta-interacting protein PDI 98.27
KOG2838401 consensus Uncharacterized conserved protein, conta 98.24
PF07707103 BACK: BTB And C-terminal Kelch; InterPro: IPR01170 98.23
KOG1987297 consensus Speckle-type POZ protein SPOP and relate 98.02
smart00875101 BACK BTB And C-terminal Kelch. The BACK domain is 97.81
PF0221494 BTB_2: BTB/POZ domain; InterPro: IPR003131 Potassi 97.7
PF11822 317 DUF3342: Domain of unknown function (DUF3342); Int 97.6
smart00512104 Skp1 Found in Skp1 protein family. Family of Skp1 97.41
KOG3473112 consensus RNA polymerase II transcription elongati 97.4
KOG0511 516 consensus Ankyrin repeat protein [General function 97.2
PF0393162 Skp1_POZ: Skp1 family, tetramerisation domain; Int 96.51
KOG1724162 consensus SCF ubiquitin ligase, Skp1 component [Po 96.37
KOG2714 465 consensus SETA binding protein SB1 and related pro 95.39
KOG1665 302 consensus AFH1-interacting protein FIP2, contains 95.07
COG5201158 SKP1 SCF ubiquitin ligase, SKP1 component [Posttra 94.83
PF0146678 Skp1: Skp1 family, dimerisation domain; InterPro: 93.76
KOG1778 319 consensus CREB binding protein/P300 and related TA 93.75
KOG2715210 consensus Uncharacterized conserved protein, conta 89.64
>PHA02713 hypothetical protein; Provisional Back     alignment and domain information 
Probab=100.00  E-value=6.9e-33  Score=250.45  Aligned_cols=181  Identities=13%  Similarity=0.163  Sum_probs=165.5

Q ss_pred             HHhHHHHHHHHHHHhhcCCCCceEEecCCCCcchHHHHHHhhcChHhhCCCCCChHHHHHhhhhcCCCCCC-CceEEee-
Q 028462            7 MRMKCEFLDGFDASLREQTPPDIHLRPCYGPPLPAHKAVLYARSTILVHPPPTFDAQLMRKYWSLGASSCE-TEIVNLP-   84 (208)
Q Consensus         7 ~~~~~~~~~~~~~l~~~~~~~Dv~~~~~~~~~i~aHk~iL~~~S~yF~~~f~~~~~~~~~~~~~~~~~e~~-~~~i~l~-   84 (208)
                      ..+...++.+|++|+.++.+|||++.+++|++|+|||.||+++|+||++||.            ++|.|.. +.+|.|. 
T Consensus         6 ~~h~~~~l~~l~~lr~~~~l~DV~L~v~~~~~f~~Hr~vLaa~S~YF~amF~------------~~~~e~~~~~~v~l~~   73 (557)
T PHA02713          6 IKHNRRVVSNISNLLDDDILCDVIITIGDGEEIKAHKTILAAGSKYFRTLFT------------TPMIIRDLVTRVNLQM   73 (557)
T ss_pred             hhhhHHHHHHHHHHHhCCCCCCEEEEeCCCCEEeehHHHHhhcCHHHHHHhc------------CCchhhccCceEEecc
Confidence            4566889999999999999999999997689999999999999999999999            8998764 7899999 


Q ss_pred             cCHHHHHHHHHHHhcCCCCCcccHHHHHHHHHHHHhcChHHHHHHHHHHHHhcCChhhHHHHHHHHhcCChHHHHHHHHH
Q 028462           85 ISREELEALLDFLYHGSLDPERTEKHIAVLFFSAWNFDILYLSEFCAHHILSSLKPSNALNAFKNAVGCSHRALLEAVLD  164 (208)
Q Consensus        85 ~~~~~~~~~l~~iYtg~i~~~~~~~~~~~ll~~A~~~~~~~l~~~c~~~l~~~l~~~n~~~~~~~a~~~~~~~L~~~~~~  164 (208)
                      +++.+++.+|+|+|||.  +  +.+++.+|+.+|++|+++.+++.|++||.+.++++||+.++..+..+.+..|.+.|.+
T Consensus        74 v~~~~~~~ll~y~Yt~~--i--~~~nv~~ll~aA~~lqi~~l~~~C~~~l~~~l~~~NCl~i~~~~~~~~~~~L~~~a~~  149 (557)
T PHA02713         74 FDKDAVKNIVQYLYNRH--I--SSMNVIDVLKCADYLLIDDLVTDCESYIKDYTNHDTCIYMYHRLYEMSHIPIVKYIKR  149 (557)
T ss_pred             CCHHHHHHHHHHhcCCC--C--CHHHHHHHHHHHHHHCHHHHHHHHHHHHHhhCCccchHHHHHHHHhccchHHHHHHHH
Confidence            99999999999999997  4  7789999999999999999999999999999999999999998998888899999999


Q ss_pred             HHHhcHHHhhcchhHHH-------HHHhCCc-hHH----HHHHHHHhcccc
Q 028462          165 FIVENMEEIAFSKEYKQ-------FVRAFPN-HSV----RITQAFFMYGSN  203 (208)
Q Consensus       165 ~i~~~~~~i~~~~~f~~-------~~~~~~~-l~v----~i~~~~~~~~~~  203 (208)
                      ||.+||.++.++++|.+       .+++++. |++    ++++++++|...
T Consensus       150 ~i~~~f~~v~~~~ef~~L~~~~l~~lL~~d~~l~v~~Ee~v~eav~~W~~~  200 (557)
T PHA02713        150 MLMSNIPTLITTDAFKKTVFEILFDIISTNDNVYLYREGYKVTILLKWLEY  200 (557)
T ss_pred             HHHHHHHHHhCChhhhhCCHHHHHHHhccccccCCCcHHHHHHHHHHHHhc
Confidence            99999999999999988       4566655 655    799999998764

>PHA02790 Kelch-like protein; Provisional Back     alignment and domain information
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only] Back     alignment and domain information
>PHA03098 kelch-like protein; Provisional Back     alignment and domain information
>KOG4350 consensus Uncharacterized conserved protein, contains BTB/POZ domain [General function prediction only] Back     alignment and domain information
>KOG2075 consensus Topoisomerase TOP1-interacting protein BTBD1 [Function unknown] Back     alignment and domain information
>PF00651 BTB: BTB/POZ domain; InterPro: IPR013069 The BTB (for BR-C, ttk and bab) [] or POZ (for Pox virus and Zinc finger) [] domain is present near the N terminus of a fraction of zinc finger (IPR007087 from INTERPRO) proteins and in proteins that contain the IPR006652 from INTERPRO motif such as Kelch and a family of pox virus proteins Back     alignment and domain information
>KOG4591 consensus Uncharacterized conserved protein, contains BTB/POZ domain [General function prediction only] Back     alignment and domain information
>KOG4682 consensus Uncharacterized conserved protein, contains BTB/POZ domain [General function prediction only] Back     alignment and domain information
>smart00225 BTB Broad-Complex, Tramtrack and Bric a brac Back     alignment and domain information
>KOG0783 consensus Uncharacterized conserved protein, contains ankyrin and BTB/POZ domains [Function unknown] Back     alignment and domain information
>KOG0511 consensus Ankyrin repeat protein [General function prediction only] Back     alignment and domain information
>KOG0783 consensus Uncharacterized conserved protein, contains ankyrin and BTB/POZ domains [Function unknown] Back     alignment and domain information
>KOG2838 consensus Uncharacterized conserved protein, contains BTB/POZ domain [General function prediction only] Back     alignment and domain information
>KOG2716 consensus Polymerase delta-interacting protein PDIP1 and related proteins, contain BTB/POZ domain [Inorganic ion transport and metabolism] Back     alignment and domain information
>KOG2838 consensus Uncharacterized conserved protein, contains BTB/POZ domain [General function prediction only] Back     alignment and domain information
>PF07707 BACK: BTB And C-terminal Kelch; InterPro: IPR011705 This domain is found associated with (IPR000210 from INTERPRO) and (IPR006652 from INTERPRO) Back     alignment and domain information
>KOG1987 consensus Speckle-type POZ protein SPOP and related proteins with TRAF, MATH and BTB/POZ domains [Cell cycle control, cell division, chromosome partitioning; General function prediction only] Back     alignment and domain information
>smart00875 BACK BTB And C-terminal Kelch Back     alignment and domain information
>PF02214 BTB_2: BTB/POZ domain; InterPro: IPR003131 Potassium channels are the most diverse group of the ion channel family [, ] Back     alignment and domain information
>PF11822 DUF3342: Domain of unknown function (DUF3342); InterPro: IPR021777 This family of proteins are functionally uncharacterised Back     alignment and domain information
>smart00512 Skp1 Found in Skp1 protein family Back     alignment and domain information
>KOG3473 consensus RNA polymerase II transcription elongation factor Elongin/SIII, subunit elongin C [Transcription] Back     alignment and domain information
>KOG0511 consensus Ankyrin repeat protein [General function prediction only] Back     alignment and domain information
>PF03931 Skp1_POZ: Skp1 family, tetramerisation domain; InterPro: IPR016073 SKP1 (together with SKP2) was identified as an essential component of the cyclin A-CDK2 S phase kinase complex [] Back     alignment and domain information
>KOG1724 consensus SCF ubiquitin ligase, Skp1 component [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG2714 consensus SETA binding protein SB1 and related proteins, contain BTB/POZ domain [General function prediction only] Back     alignment and domain information
>KOG1665 consensus AFH1-interacting protein FIP2, contains BTB/POZ domain and pentapeptide repeats [General function prediction only] Back     alignment and domain information
>COG5201 SKP1 SCF ubiquitin ligase, SKP1 component [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PF01466 Skp1: Skp1 family, dimerisation domain; InterPro: IPR016072 SKP1 (together with SKP2) was identified as an essential component of the cyclin A-CDK2 S phase kinase complex [] Back     alignment and domain information
>KOG1778 consensus CREB binding protein/P300 and related TAZ Zn-finger proteins [Transcription] Back     alignment and domain information
>KOG2715 consensus Uncharacterized conserved protein, contains BTB/POZ domain [General function prediction only] Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query208
3htm_A172 Speckle-type POZ protein; BTB, SPOP, ubiquitin, li 1e-12
3hqi_A312 Speckle-type POZ protein; SPOP, ubiquitin, puckere 1e-10
3hve_A256 Gigaxonin; ubiquitin, cytoplasm, cytoskeleton, dis 1e-08
3i3n_A279 Kelch-like protein 11; structural genomics, BTB, K 6e-07
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 1e-06
4eoz_A145 Speckle-type POZ protein; E3 ubiquitin ligase, nuc 2e-06
2vkp_A109 BTB/POZ domain-containing protein 6; protein-bindi 7e-05
2yy9_A135 Zinc finger and BTB domain-containing protein 48; 4e-04
>3htm_A Speckle-type POZ protein; BTB, SPOP, ubiquitin, ligase, nucleus, UBL conjugation pathway, protein binding; 2.50A {Homo sapiens} Length = 172 Back     alignment and structure
 Score = 62.3 bits (152), Expect = 1e-12
 Identities = 37/170 (21%), Positives = 57/170 (33%), Gaps = 22/170 (12%)

Query: 11  CEFLDGFDASLREQTPPDIHLRPCYGPPLPAHKAVLYARSTILVHPPPTFDAQL---MRK 67
           C   D            D  L    G    AHKA+L ARS       P F A     M +
Sbjct: 19  CRLADELGGLWENSRFTDCCLC-VAGQEFQAHKAILAARS-------PVFSAMFEHEMEE 70

Query: 68  YWSLGASSCETEIVNLP-ISREELEALLDFLYHGSLDPERTEKHIAVLFFSAWNFDILYL 126
                    +   V +  +  E  + ++ F+Y G       +K    L  +A  + +  L
Sbjct: 71  --------SKKNRVEINDVEPEVFKEMMCFIYTGKAPN--LDKMADDLLAAADKYALERL 120

Query: 127 SEFCAHHILSSLKPSNALNAFKNAVGCSHRALLEAVLDFIVENMEEIAFS 176
              C   + S+L   NA      A   S   L    +DFI  +  ++  +
Sbjct: 121 KVMCEDALCSNLSVENAAEILILADLHSADQLKTQAVDFINYHATDVLET 170
>3hqi_A Speckle-type POZ protein; SPOP, ubiquitin, puckered, nucleus, UBL conjugation pathway, protein binding, ligase; 2.62A {Homo sapiens} PDB: 3hu6_A Length = 312 Back     alignment and structure
>3hve_A Gigaxonin; ubiquitin, cytoplasm, cytoskeleton, disease mutation, kelch repeat, neurodegeneration, phosphoprotein, polymorphism, UBL conjugation; 2.80A {Homo sapiens} PDB: 3hve_B Length = 256 Back     alignment and structure
>3i3n_A Kelch-like protein 11; structural genomics, BTB, KLHL11A, SGC, structural genomics consortium, kelch repeat, secreted, protein binding; 2.60A {Homo sapiens} Length = 279 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>4eoz_A Speckle-type POZ protein; E3 ubiquitin ligase, nucleus, protein binding; 2.40A {Homo sapiens} Length = 145 Back     alignment and structure
>2vkp_A BTB/POZ domain-containing protein 6; protein-binding; 1.9A {Homo sapiens} Length = 109 Back     alignment and structure
>2yy9_A Zinc finger and BTB domain-containing protein 48; mouse, HKR3, structural genomics, NPPSFA; 2.60A {Mus musculus} Length = 135 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query208
3hve_A256 Gigaxonin; ubiquitin, cytoplasm, cytoskeleton, dis 100.0
3i3n_A279 Kelch-like protein 11; structural genomics, BTB, K 100.0
3htm_A172 Speckle-type POZ protein; BTB, SPOP, ubiquitin, li 100.0
3hqi_A312 Speckle-type POZ protein; SPOP, ubiquitin, puckere 99.97
4eoz_A145 Speckle-type POZ protein; E3 ubiquitin ligase, nuc 99.96
2if5_A120 Zinc finger and BTB domain-containing protein 7A; 99.94
1r29_A127 B-cell lymphoma 6 protein; BTB domain, transcripti 99.94
2z8h_A138 Transcription regulator protein BACH1; BTB, POZ, d 99.93
3b84_A119 Zinc finger and BTB domain-containing protein 48; 99.93
2vkp_A109 BTB/POZ domain-containing protein 6; protein-bindi 99.93
1buo_A121 POZ domain, protein (promyelocytic leukemia zinc f 99.93
2yy9_A135 Zinc finger and BTB domain-containing protein 48; 99.93
2ppi_A144 Gigaxonin; BTB domain, protein degradation, struct 99.92
2vpk_A116 Myoneurin; transcription regulation, transcription 99.92
2q81_A119 MIZ-1 protein; BTB/POZ domain, transcription; HET: 99.92
2ihc_A124 Transcription regulator protein BACH1; BRIC-A-BRAC 99.9
3ohu_A125 Transcription regulator protein BACH2; BTB/POZ dom 99.9
3ga1_A129 Nucleus accumbens-associated protein 1; BTB/POZ do 99.9
3fkc_A116 Transcriptional regulator kaiso; zinc finger and B 99.89
3m5b_A119 Zinc finger and BTB domain-containing protein 32; 99.87
2ast_A159 S-phase kinase-associated protein 1A; SCF-substrat 99.6
4ajy_C97 Transcription elongation factor B polypeptide 1; E 99.37
1fs1_B141 SKP1, cyclin A/CDK2-associated P45; F-BOX, LRR, le 99.27
2p1m_A160 SKP1-like protein 1A; F-BOX, leucine rich repeat, 99.24
3v7d_A169 Suppressor of kinetochore protein 1; WD 40 domain, 98.7
1hv2_A99 Elongin C, ELC1; protein-peptide complex, signalin 98.64
2eqx_A105 Kelch repeat and BTB domain-containing protein 4; 98.62
2fnj_C96 Transcription elongation factor B polypeptide 1; b 98.57
3drz_A107 BTB/POZ domain-containing protein KCTD5; potassium 98.29
1vcb_B112 Protein (elongin C); tumor suppressor, cancer, ubi 98.19
3drx_A202 BTB/POZ domain-containing protein KCTD5; golgi, gr 97.25
3kvt_A115 Potassium channel protein SHAW; tetramerization do 96.3
1s1g_A124 Potassium voltage-gated channel subfamily D membe; 96.2
1t1d_A100 Protein (potassium channel KV1.1); potassium chann 95.49
1nn7_A105 Potassium channel KV4.2; teteramerization domain, 95.25
2nz0_B140 Potassium voltage-gated channel subfamily D membe; 95.16
2eqx_A105 Kelch repeat and BTB domain-containing protein 4; 90.89
2vkp_A109 BTB/POZ domain-containing protein 6; protein-bindi 84.04
2r9r_B 514 Paddle chimera voltage gated potassium channel KV; 80.52
>3hve_A Gigaxonin; ubiquitin, cytoplasm, cytoskeleton, disease mutation, kelch repeat, neurodegeneration, phosphoprotein, polymorphism, UBL conjugation; 2.80A {Homo sapiens} PDB: 3hve_B Back     alignment and structure
Probab=100.00  E-value=2.9e-35  Score=240.94  Aligned_cols=182  Identities=16%  Similarity=0.227  Sum_probs=158.0

Q ss_pred             HhHHHHHHHHHHHhhcCCCCceEEecCCCCcchHHHHHHhhcChHhhCCCCCChHHHHHhhhhcCCC--CCCCceEEee-
Q 028462            8 RMKCEFLDGFDASLREQTPPDIHLRPCYGPPLPAHKAVLYARSTILVHPPPTFDAQLMRKYWSLGAS--SCETEIVNLP-   84 (208)
Q Consensus         8 ~~~~~~~~~~~~l~~~~~~~Dv~~~~~~~~~i~aHk~iL~~~S~yF~~~f~~~~~~~~~~~~~~~~~--e~~~~~i~l~-   84 (208)
                      .+...+++++++++++|.+|||+|.++ |+.|+|||.||+++|+||++||.            +++.  ++....|.++ 
T Consensus        13 ~~~~~l~~~l~~l~~~~~~~Dv~l~v~-~~~f~~Hr~vLaa~S~yF~~mf~------------~~~~~~e~~~~~i~l~~   79 (256)
T 3hve_A           13 QHAARLLRALSSFREESRFCDAHLVLD-GEEIPVQKNILAAASPYIRTKLN------------YNPPKDDGSTYKIELEG   79 (256)
T ss_dssp             TTHHHHHHHHHTCCC--CCCCEEEEET-TEEEEECHHHHHTTCHHHHHTC-----------------------CEEECSS
T ss_pred             HHHHHHHHHHHHHHhcCCCcceEEEEC-CEEEechHHHHHHcCHHHHHHhC------------CCCCcccCCCCeEEeCC
Confidence            456789999999999999999999996 99999999999999999999998            7776  6677899999 


Q ss_pred             cCHHHHHHHHHHHhcCCCCCcccHHHHHHHHHHHHhcChHHHHHHHHHHHHhcCChhhHHHHHHHHhcCChHHHHHHHHH
Q 028462           85 ISREELEALLDFLYHGSLDPERTEKHIAVLFFSAWNFDILYLSEFCAHHILSSLKPSNALNAFKNAVGCSHRALLEAVLD  164 (208)
Q Consensus        85 ~~~~~~~~~l~~iYtg~i~~~~~~~~~~~ll~~A~~~~~~~l~~~c~~~l~~~l~~~n~~~~~~~a~~~~~~~L~~~~~~  164 (208)
                      +++.+|+.+++|+|||.+.+  +.+++.+++.+|++|+++.|+..|++++...++++||+.++..|..+++..|.+.|.+
T Consensus        80 v~~~~f~~ll~~~Yt~~~~i--~~~~v~~ll~~A~~l~i~~l~~~c~~~L~~~l~~~n~~~i~~~A~~~~~~~L~~~~~~  157 (256)
T 3hve_A           80 ISVMVMREILDYIFSGQIRL--NEDTIQDVVQAADLLLLTDLKTLCCEFLEGCIAAENCIGIRDFALHYCLHHVHYLATE  157 (256)
T ss_dssp             CCHHHHHHHHHHHHHSCCCC--C-CCHHHHHHHHHHHTCHHHHHHHHHHHHHTCCSSTTHHHHHHHHHTTCHHHHHHHHH
T ss_pred             CCHHHHHHHHhhccCCCCcc--cHhHHHHHHHHHHHHChHHHHHHHHHHHHhhCCHhhHHHHHHHHHHcCcHHHHHHHHH
Confidence            99999999999999999988  8999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHhcHHHhhcchhHHH-------HHHhCCchHH----HHHHHHHhccccc
Q 028462          165 FIVENMEEIAFSKEYKQ-------FVRAFPNHSV----RITQAFFMYGSNK  204 (208)
Q Consensus       165 ~i~~~~~~i~~~~~f~~-------~~~~~~~l~v----~i~~~~~~~~~~~  204 (208)
                      ||.+||.++..+++|.+       .+++++.|+|    ++++++++|....
T Consensus       158 ~i~~~f~~v~~~~~f~~L~~~~l~~lL~~d~L~v~~E~~v~~av~~W~~~~  208 (256)
T 3hve_A          158 YLETHFRDVSSTEEFLELSPQKLKEVISLEKLNVGNERYVFEAVIRWIAHD  208 (256)
T ss_dssp             HHHHHHHHHTTCHHHHSSCHHHHHHHHHCC-------CTTHHHHTTTCCC-
T ss_pred             HHHHHHHHHhCCcchhcCCHHHHHHHHccCCCCCCCHHHHHHHHHHHHHcC
Confidence            99999999999999987       7888899987    7999999998754
>3i3n_A Kelch-like protein 11; structural genomics, BTB, KLHL11A, SGC, structural genomics consortium, kelch repeat, secreted, protein binding; 2.60A {Homo sapiens} PDB: 4ap2_A* 4apf_A Back     alignment and structure
>3htm_A Speckle-type POZ protein; BTB, SPOP, ubiquitin, ligase, nucleus, UBL conjugation pathway, protein binding; 2.50A {Homo sapiens} Back     alignment and structure
>3hqi_A Speckle-type POZ protein; SPOP, ubiquitin, puckered, nucleus, UBL conjugation pathway, protein binding, ligase; 2.62A {Homo sapiens} PDB: 3hu6_A Back     alignment and structure
>4eoz_A Speckle-type POZ protein; E3 ubiquitin ligase, nucleus, protein binding; 2.40A {Homo sapiens} Back     alignment and structure
>2if5_A Zinc finger and BTB domain-containing protein 7A; POZ domain, POK, proto oncogene, transcription F transcription; 2.00A {Homo sapiens} PDB: 2nn2_A Back     alignment and structure
>1r29_A B-cell lymphoma 6 protein; BTB domain, transcriptional repression, transcription; 1.30A {Homo sapiens} SCOP: d.42.1.1 PDB: 1r28_A 1r2b_A 3bim_A 3lbz_A* 3e4u_A Back     alignment and structure
>2z8h_A Transcription regulator protein BACH1; BTB, POZ, disulfide bond, activator, DNA-binding, nucleus, phosphorylation, repressor; 2.50A {Mus musculus} Back     alignment and structure
>3b84_A Zinc finger and BTB domain-containing protein 48; krueppel related zinc finger protein 3, HKR3, ZBTB48, Z finger, oncogene; 1.74A {Homo sapiens} Back     alignment and structure
>2vkp_A BTB/POZ domain-containing protein 6; protein-binding; 1.9A {Homo sapiens} Back     alignment and structure
>1buo_A POZ domain, protein (promyelocytic leukemia zinc finger prote; protein-protein interaction domain, transcriptional represso finger protein; 1.90A {Homo sapiens} SCOP: d.42.1.1 PDB: 1cs3_A Back     alignment and structure
>2yy9_A Zinc finger and BTB domain-containing protein 48; mouse, HKR3, structural genomics, NPPSFA; 2.60A {Mus musculus} Back     alignment and structure
>2ppi_A Gigaxonin; BTB domain, protein degradation, structural genomics, struct genomics consortium, SGC, structural protein; 2.40A {Homo sapiens} Back     alignment and structure
>2vpk_A Myoneurin; transcription regulation, transcription, metal-binding, alternative splicing, zinc, nucleus, BTB domain, zinc-finger, DNA-binding; 2.00A {Homo sapiens} Back     alignment and structure
>2q81_A MIZ-1 protein; BTB/POZ domain, transcription; HET: PG4; 2.10A {Homo sapiens} PDB: 3m52_A Back     alignment and structure
>2ihc_A Transcription regulator protein BACH1; BRIC-A-BRAC domain,transcription factor, protein-PROT interaction; 2.44A {Homo sapiens} Back     alignment and structure
>3ohu_A Transcription regulator protein BACH2; BTB/POZ domain; 2.10A {Homo sapiens} SCOP: d.42.1.0 PDB: 3ohv_A Back     alignment and structure
>3ga1_A Nucleus accumbens-associated protein 1; BTB/POZ domain, phosphoprotein, repressor, transcri transcription regulation; 2.10A {Homo sapiens} Back     alignment and structure
>3fkc_A Transcriptional regulator kaiso; zinc finger and BTB domain containing 33, kaiso transcriptio ZNF-kaiso, ZNF348,wugsc:H_DJ525N14.1; 1.70A {Homo sapiens} PDB: 3m4t_A 3m8v_A Back     alignment and structure
>3m5b_A Zinc finger and BTB domain-containing protein 32; POZ domain, BTB/POZ domain, ZBTB32, zinc finger domain-containing protein 32; 2.00A {Homo sapiens} SCOP: d.42.1.0 Back     alignment and structure
>4ajy_C Transcription elongation factor B polypeptide 1; E3 ubiquitin ligase, transcription factor, hypoxic signaling transcription; 1.73A {Homo sapiens} PDB: 2izv_C 3dcg_B 3zrc_B* 3zrf_B 3ztc_B* 3ztd_B* 3zun_B* 2c9w_C 4awj_B* 4b95_B* 4b9k_B* 2fnj_C 1lqb_B 1lm8_C 2jz3_C 2xai_B 4b9k_E* Back     alignment and structure
>1fs1_B SKP1, cyclin A/CDK2-associated P45; F-BOX, LRR, leucine-rich repeat, SCF, ubiquitin, ubiquitin protein ligase; 1.80A {Homo sapiens} SCOP: a.157.1.1 d.42.1.1 PDB: 1fs2_B 1ldk_D Back     alignment and structure
>2p1m_A SKP1-like protein 1A; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_A* 2p1o_A* 2p1p_A* 2p1q_A* 3c6n_A* 3c6o_A* 3c6p_A* 3ogk_A* 3ogl_A* 3ogm_A* Back     alignment and structure
>3v7d_A Suppressor of kinetochore protein 1; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_A* 3mks_A* Back     alignment and structure
>1hv2_A Elongin C, ELC1; protein-peptide complex, signaling protein; NMR {Saccharomyces cerevisiae} SCOP: d.42.1.1 Back     alignment and structure
>2eqx_A Kelch repeat and BTB domain-containing protein 4; BACK domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Back     alignment and structure
>2fnj_C Transcription elongation factor B polypeptide 1; beta-sandwich, lectin-like, SPRY, protein transport/signaling protein complex; 1.80A {Mus musculus} SCOP: d.42.1.1 PDB: 1lqb_B 1lm8_C 2jz3_C 2xai_B 2c9w_C 2izv_C 3dcg_B 3zrc_B* 3zrf_B Back     alignment and structure
>3drz_A BTB/POZ domain-containing protein KCTD5; potassium channel domain T1, pentamer, unkno function; 1.90A {Homo sapiens} Back     alignment and structure
>1vcb_B Protein (elongin C); tumor suppressor, cancer, ubiquitin, beta sandwich, transcription, transcriptional elongation; 2.70A {Homo sapiens} SCOP: d.42.1.1 Back     alignment and structure
>3drx_A BTB/POZ domain-containing protein KCTD5; golgi, grAsp55, potassium channel domain T1, pentameric assembly, HOST-virus interaction, nucleus; 3.11A {Homo sapiens} PDB: 3dry_A Back     alignment and structure
>3kvt_A Potassium channel protein SHAW; tetramerization domain, molecular recogni zinc-binding; 2.00A {Aplysia californica} SCOP: d.42.1.2 Back     alignment and structure
>1s1g_A Potassium voltage-gated channel subfamily D membe; K+ channels, tetramerization domain, T1 domain, transport PR; 2.60A {Homo sapiens} SCOP: d.42.1.2 Back     alignment and structure
>1t1d_A Protein (potassium channel KV1.1); potassium channels, tetramerization domain, aplysia KV1.1, proton transport, membrane protein; 1.51A {Aplysia californica} SCOP: d.42.1.2 PDB: 1eod_A 1eof_A 1eoe_A 1a68_A 1qdv_A 1exb_E* 1qdw_A 1dsx_A Back     alignment and structure
>1nn7_A Potassium channel KV4.2; teteramerization domain, voltage gated potassium channel SHAL, membrane protein; 2.10A {Rattus norvegicus} SCOP: d.42.1.2 Back     alignment and structure
>2nz0_B Potassium voltage-gated channel subfamily D membe; KV4.3, kchip1, membrane protein; 3.20A {Homo sapiens} PDB: 2i2r_A Back     alignment and structure
>2eqx_A Kelch repeat and BTB domain-containing protein 4; BACK domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Back     alignment and structure
>2vkp_A BTB/POZ domain-containing protein 6; protein-binding; 1.9A {Homo sapiens} Back     alignment and structure
>2r9r_B Paddle chimera voltage gated potassium channel KV; voltage sensor, voltage dependent, ION CH shaker, membrane protein, eukaryotic; HET: NAP PGW; 2.40A {Rattus norvegicus} PDB: 3lnm_B* 3lut_B* 2a79_B* Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 208
d1r29a_122 d.42.1.1 (A:) B-cell lymphoma 6 (Bcl6) protein BTB 3e-05
d1buoa_121 d.42.1.1 (A:) Promyelocytic leukaemia zinc finger 0.001
>d1r29a_ d.42.1.1 (A:) B-cell lymphoma 6 (Bcl6) protein BTB domain {Human (Homo sapiens) [TaxId: 9606]} Length = 122 Back     information, alignment and structure

class: Alpha and beta proteins (a+b)
fold: POZ domain
superfamily: POZ domain
family: BTB/POZ domain
domain: B-cell lymphoma 6 (Bcl6) protein BTB domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.1 bits (93), Expect = 3e-05
 Identities = 27/134 (20%), Positives = 45/134 (33%), Gaps = 16/134 (11%)

Query: 5   ELMRMKCEFLDGFDASLREQTPPDIHLRPCYGPPLPAHKAVLYARSTILVHPPPTFDAQL 64
           +  R   + L   +         D+ +         AHK VL A S             L
Sbjct: 4   QFTRHASDVLLNLNRLRSRDILTDVVIV-VSREQFRAHKTVLMACS------------GL 50

Query: 65  MRKYWSLGASSCETEIVNLP-ISREELEALLDFLYHGSLDPERTEKHIAVLFFSAWNFDI 123
               ++       + I   P I+ E    LLDF+Y   L     E +I  +  +A    +
Sbjct: 51  FYSIFTDQLKRNLSVINLDPEINPEGFNILLDFMYTSRL--NLREGNIMAVMATAMYLQM 108

Query: 124 LYLSEFCAHHILSS 137
            ++ + C   I +S
Sbjct: 109 EHVVDTCRKFIKAS 122
>d1buoa_ d.42.1.1 (A:) Promyelocytic leukaemia zinc finger (PLZF) protein BTB domain {Human (Homo sapiens) [TaxId: 9606]} Length = 121 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query208
d1r29a_122 B-cell lymphoma 6 (Bcl6) protein BTB domain {Human 99.94
d1buoa_121 Promyelocytic leukaemia zinc finger (PLZF) protein 99.93
d2c9wc196 Elongin C {Human (Homo sapiens) [TaxId: 9606]} 98.14
d1hv2a_99 Elongin C {Baker's yeast (Saccharomyces cerevisiae 98.01
d1nn7a_105 Potassium channel kv4.2 {Rat (Rattus norvegicus) [ 97.37
d3kvta_103 akv3.1 voltage-gated potassium channel {California 97.09
d1t1da_100 Shaker potassium channel {California sea hare (Apl 96.99
d1nexa272 Centromere DNA-binding protein complex Cbf3 subuni 95.52
d1fs1b155 Cyclin A/CDK2-associated p45, Skp1 {Human (Homo sa 94.89
d1fs1b261 Cyclin A/CDK2-associated p45, Skp1 {Human (Homo sa 94.58
d1nexa170 Centromere DNA-binding protein complex Cbf3 subuni 93.69
>d1r29a_ d.42.1.1 (A:) B-cell lymphoma 6 (Bcl6) protein BTB domain {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
class: Alpha and beta proteins (a+b)
fold: POZ domain
superfamily: POZ domain
family: BTB/POZ domain
domain: B-cell lymphoma 6 (Bcl6) protein BTB domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.94  E-value=3.3e-27  Score=171.07  Aligned_cols=114  Identities=22%  Similarity=0.252  Sum_probs=107.0

Q ss_pred             HhHHHHHHHHHHHhhcCCCCceEEecCCCCcchHHHHHHhhcChHhhCCCCCChHHHHHhhhhcCCCCCCCceEEee-cC
Q 028462            8 RMKCEFLDGFDASLREQTPPDIHLRPCYGPPLPAHKAVLYARSTILVHPPPTFDAQLMRKYWSLGASSCETEIVNLP-IS   86 (208)
Q Consensus         8 ~~~~~~~~~~~~l~~~~~~~Dv~~~~~~~~~i~aHk~iL~~~S~yF~~~f~~~~~~~~~~~~~~~~~e~~~~~i~l~-~~   86 (208)
                      .+..+++..++.++++|.+|||++.++ |++|+|||+||+++|+||++||.            +++.++....+.++ ++
T Consensus         7 ~h~~~ll~~l~~l~~~~~~~Dv~l~v~-~~~~~~Hk~vLa~~S~~F~~~f~------------~~~~e~~~~~~~~~~v~   73 (122)
T d1r29a_           7 RHASDVLLNLNRLRSRDILTDVVIVVS-REQFRAHKTVLMACSGLFYSIFT------------DQLKRNLSVINLDPEIN   73 (122)
T ss_dssp             THHHHHHHHHHHHHHTTCSCCEEEEET-TEEEEECHHHHHHHCHHHHHHHT------------STTTTTCSEEECCTTSC
T ss_pred             hHHHHHHHHHHHHHhcCCCeEEEEEEC-CEEEEEehHHhhhCCHHHHHHhc------------cchhhhcceeeeecccC
Confidence            566889999999999999999999996 89999999999999999999998            88888887777777 99


Q ss_pred             HHHHHHHHHHHhcCCCCCcccHHHHHHHHHHHHhcChHHHHHHHHHHHHh
Q 028462           87 REELEALLDFLYHGSLDPERTEKHIAVLFFSAWNFDILYLSEFCAHHILS  136 (208)
Q Consensus        87 ~~~~~~~l~~iYtg~i~~~~~~~~~~~ll~~A~~~~~~~l~~~c~~~l~~  136 (208)
                      +++|..+++|+|||++.+  +.+++.+++.+|++|+++.|++.|.++|++
T Consensus        74 ~~~f~~ll~~~Ytg~~~i--~~~~v~~ll~~A~~l~i~~L~~~C~~~L~~  121 (122)
T d1r29a_          74 PEGFNILLDFMYTSRLNL--REGNIMAVMATAMYLQMEHVVDTCRKFIKA  121 (122)
T ss_dssp             HHHHHHHHHHHHHSCCCC--CTTTHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred             HHHHHHHHhhhcCCeecC--chhhHHHHHHHHHHHCcHHHHHHHHHHHHh
Confidence            999999999999999988  889999999999999999999999999975
>d1buoa_ d.42.1.1 (A:) Promyelocytic leukaemia zinc finger (PLZF) protein BTB domain {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2c9wc1 d.42.1.1 (C:17-112) Elongin C {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1hv2a_ d.42.1.1 (A:) Elongin C {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1nn7a_ d.42.1.2 (A:) Potassium channel kv4.2 {Rat (Rattus norvegicus) [TaxId: 10116]} Back     information, alignment and structure
>d3kvta_ d.42.1.2 (A:) akv3.1 voltage-gated potassium channel {California sea hare (Aplysia californica) [TaxId: 6500]} Back     information, alignment and structure
>d1t1da_ d.42.1.2 (A:) Shaker potassium channel {California sea hare (Aplysia californica) [TaxId: 6500]} Back     information, alignment and structure
>d1nexa2 d.42.1.1 (A:4-103) Centromere DNA-binding protein complex Cbf3 subunit D, CBF3D {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1fs1b1 a.157.1.1 (B:86-140) Cyclin A/CDK2-associated p45, Skp1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1fs1b2 d.42.1.1 (B:2-68) Cyclin A/CDK2-associated p45, Skp1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1nexa1 a.157.1.1 (A:116-185) Centromere DNA-binding protein complex Cbf3 subunit D, CBF3D {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure