Citrus Sinensis ID: 028484

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------21
Protein Sequence
MSVESVKDKLWRKCGTSVNSMSLELYDDTNTKVAALTDNSRPLGFYSPLQGYRLHVIDLDPSSVTSGGWLEDTSLVEKYTISEEEYSKRDGTFRKFKEKVLSQNPSAVENKLSNNYMEDLCSNITVGDRCEVDPGAKRGVVKYVGQAESIAPGFWVGIQYDEPLGKHNGIVKGVRYFECPPLHGAMVRPDKVKVGDYPERDPFEEDEI
Secondary Structure (PSIPRED)
ccHHHHHHccccccccccccEEEEEEcccccEEEEcccccccccccccccccEEEEEcccccccccccccccccccccccccHHHHccccccHHHHHHHHccccccHHHHccccccccccccccccccEEEEcccccEEEEEEEEccccccccEEEEEEEcccccccccEEccEEcEEccccccEEcccccEEEcccccccccccccc
Secondary Structure Prediction (SSPRO)
ccHHHHHHHHHHHcccccccEEEEEEcccccEEEEccccccHHcccccccccEEEEEEccccccccccccccccccEEEEccHHHHHHcccHHHHHHHHHccccHHHHHHHHHHHHHHHHHHccccccEEEEEccccEEEEEEEccccccccccEEEEEEccccccEccEEccEEccccccccEEEEcHHHEEEcccccccccccccc
Coil and Loop (DISEMBL)
msvesvkdklwrkcgtsvnsmslelyddtntkvaaltdnsrplgfysplqgyrlhvidldpssvtsggwledtSLVEKYTiseeeyskrdgtfRKFKEKVLsqnpsavenklsnnymedlcsnitvgdrcevdpgakrGVVKYVGqaesiapgfwvgiqydeplgkhngivkgvryfecpplhgamvrpdkvkvgdyperdpfeedei
Flexible Loop (DISEMBL)
msvesvkdklwrkcgtsvnsmslelyddTNTKVAALTDNSRPLGFYSPLQGYRLHVIDLDPssvtsggwledtslvekytiseeeyskrdgtfrkfkekvlsqnpsavenklsnnYMEDLCSNITVGDRCEVDPGAKRGVVKYVGQAESIAPGFWVGIQYDEPLGKHNGIVKGVRYFECPPlhgamvrpdkvkvgdyperdpfeedei
Low Complexity Region (SEG)
MSVESVKDKLWRKCGTSVNSMSLELYDDTNTKVAALTDNSRPLGFYSPLQGYRLHVIDLDPSSVTSGGWLEDTSLVEKYTISEEEYSKRDGTFRKFKEKVLSQNPSAVENKLSNNYMEDLCSNITVGDRCEVDPGAKRGVVKYVGQAESIAPGFWVGIQYDEPLGKHNGIVKGVRYFECPPLHGAMVRPDKVKVGDYPERDPFEEDEI
Disordered region (IsUnstruct)
*********LWRKCGTSVNSMSLELYDDTNTKVAALTDNSRPLGFYSPLQGYRLHVIDLDPSSVTSGGWLEDTSLVEKYTI********************************NNYMEDLCSNITVGDRCEVDPGAKRGVVKYVGQAESIAPGFWVGIQYDEPLGKHNGIVKGVRYFECPPLHGAMVR********************
Disordered Region (DISOPRED)
MSVESVKDKLWRKCGTSVNSMSLELYDDTNT*****TDNSRPLGFYSPLQGYRLHVIDL****************************************************************ITVGDRCEVDPGAKRGVVKYVGQAESIAPGFWVGIQYDEPLGKHNGIVKGVRYFECPPLHGAMVRPDKVKVGDYPERD*FE*DEI
Disordered Region (DISEMBL)
*********LWRKCGTSVNSMSLELYDDTNTKVAALTDNSRPLGFYSPLQGYRLHVIDLDPSSVTSGGWLEDTSLVEKYTISEEEYSKRDGTFRKFKEKVLSQNPSAVENKLSNNYMEDLCSNITVGDRCEVDPGAKRGVVKYVGQAESIAPGFWVGIQYDEPLGKHNGIVKGVRYFECPPLHGAMVRPDKVKVGDYPERDPFEEDEI
Disordered Region (DISPRO)
MSVESVKDKLWRKCGTSVNSMSLELYDDTNTKVAALTDNSRPLGFYSPLQGYRLHVIDLDPSSVTSGGWLEDTSLVEKYTISEEEYSKRDGTFRKFKEKVLSQNPSAVENKLSNNYMEDLCSNITVGDRCEVDPGAKRGVVKYVGQAESIAPGFWVGIQYDEPLGKHNGIVKGVRYFECPPLHGAMVRPDKVKVGDYPERD*******
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MSVESVKDKLWRKCGTSVNSMSLELYDDTNTKVAALTDNSRPLGFYSPLQGYRLHVIDLDPSSVTSGGWLEDTSLVEKYTISEEEYSKRDGTFRKFKEKVLSQNPSAVENKLSNNYMEDLCSNITVGDRCEVDPGAKRGVVKYVGQAESIAPGFWVGIQYDEPLGKHNGIVKGVRYFECPPLHGAMVRPDKVKVGDYPERDPFEEDEI
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	208	2.2.26 [Sep-21-2011]
Q20728	229	Tubulin-specific chaperon	yes	no	0.923	0.838	0.439	3e-37
Q9D1E6	244	Tubulin-folding cofactor	yes	no	0.937	0.799	0.403	4e-32
Q5E951	244	Tubulin-folding cofactor	yes	no	0.947	0.807	0.407	2e-30
Q99426	244	Tubulin-folding cofactor	yes	no	0.975	0.831	0.394	8e-30
Q54Z01	270	Tubulin-specific chaperon	yes	no	0.951	0.733	0.367	2e-27
Q10235	234	Cell polarity protein alp	yes	no	0.634	0.564	0.328	2e-13
Q9UDT6	1046	CAP-Gly domain-containing	no	no	0.350	0.069	0.48	2e-13
Q9Z0H8	1047	CAP-Gly domain-containing	no	no	0.350	0.069	0.48	2e-13
O55156	1046	CAP-Gly domain-containing	no	no	0.350	0.069	0.466	5e-13
Q96DZ5	547	CAP-Gly domain-containing	no	no	0.317	0.120	0.470	4e-12

>sp|Q20728|TBCB_CAEEL Tubulin-specific chaperone B OS=Caenorhabditis elegans GN=F53F4.3 PE=1 SV=1

 Score =  155 bits (391), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 90/205 (43%), Positives = 126/205 (61%), Gaps = 13/205 (6%)

Query: 1   MSVESVKDKLWRKCGTSVNSMSLELYDDTNTKVAALTDNSRPLGFYSPLQGYRLHVIDLD 60
           MS+  +K KL    GT+V+SM ++L+D  +     LTD ++ L       GYR+H +D  
Sbjct: 26  MSLNDLKKKLELVVGTTVDSMRIQLFDGDDQLKGELTDGAKSLKDLGVRDGYRIHAVD-- 83

Query: 61  PSSVTSGGW-LEDTSLVEKYTISEEEYSKRDGTFRKFKEKVLSQNPSA--VENKLSNNYM 117
              VT G    +D S+VEKY +S++ Y KR  + R +K+K+  +  SA  +EN+ S+   
Sbjct: 84  ---VTGGNEDFKDESMVEKYEMSDDTYGKRTDSVRAWKKKMQEEQGSAAPMENE-SDKLN 139

Query: 118 EDLCSNITVGDRCEVDPGA---KRGVVKYVGQAESIAPGFWVGIQYDEPLGKHNGIVKGV 174
           E+   NI VG+RCEV  GA   +RG V YVG A     G WVG++YDEP+GK++G V GV
Sbjct: 140 EEAAKNIMVGNRCEVTVGAQMARRGEVAYVG-ATKFKEGVWVGVKYDEPVGKNDGSVAGV 198

Query: 175 RYFECPPLHGAMVRPDKVKVGDYPE 199
           RYF+C P +G  VRP  VKVGD+PE
Sbjct: 199 RYFDCDPKYGGFVRPVDVKVGDFPE 223

Binds to alpha-tubulin folding intermediates after their interaction with cytosolic chaperonin in the pathway leading from newly synthesized tubulin to properly folded heterodimer.
Caenorhabditis elegans (taxid: 6239)

>sp|Q9D1E6|TBCB_MOUSE Tubulin-folding cofactor B OS=Mus musculus GN=Tbcb PE=1 SV=2

 Score =  137 bits (346), Expect = 4e-32,   Method: Compositional matrix adjust.
 Identities = 86/213 (40%), Positives = 112/213 (52%), Gaps = 18/213 (8%)

Query: 1   MSVESVKDKLWRKCGTSVNSMSLELYDDTNTKVAALTDNSRPLGFYSPLQGYRLHVIDLD 60
           +++   K KL    G+  + M LELY   +   + L      LG Y    G R+HVID  
Sbjct: 32  LTIAEFKCKLELVVGSPASCMELELYGADDKFYSKLDQEDALLGSYPVDDGCRIHVID-- 89

Query: 61  PSSVTSGGWLEDTSLVEKYTISEEEYSKRDGTFRKF---------KEKVLSQNPSAVENK 111
             S    G  ED S VEKY IS E Y +R  T R F          E++ +Q  +    +
Sbjct: 90  -HSGVRLGEYEDVSKVEKYEISPEAYERRQNTVRSFMKRSKLGPYNEELRAQQEAEAAQR 148

Query: 112 LSNNYMEDLCSNITVGDRCEV---DPGAKRGVVKYVGQAESIAPGFWVGIQYDEPLGKHN 168
           LS    +   S I+VG RCEV   D   +RG V YVG  +   PG+WVG++YDEPLGK++
Sbjct: 149 LSEEKAQ--ASAISVGSRCEVRAPDHSLRRGTVMYVGLTD-FKPGYWVGVRYDEPLGKND 205

Query: 169 GIVKGVRYFECPPLHGAMVRPDKVKVGDYPERD 201
           G V G RYFEC   +GA V+P  V VGD+PE D
Sbjct: 206 GSVNGKRYFECQAKYGAFVKPSAVTVGDFPEED 238

Binds to alpha-tubulin folding intermediates after their interaction with cytosolic chaperonin in the pathway leading from newly synthesized tubulin to properly folded heterodimer (By similarity). Involved in regulation of tubulin heterodimer dissociation. May function as a negative regulator of axonal growth.

Mus musculus (taxid: 10090)

>sp|Q5E951|TBCB_BOVIN Tubulin-folding cofactor B OS=Bos taurus GN=TBCB PE=2 SV=1

 Score =  132 bits (331), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 86/211 (40%), Positives = 112/211 (53%), Gaps = 14/211 (6%)

Query: 1   MSVESVKDKLWRKCGTSVNSMSLELYDDTNTKVAALTDNSRPLGFYSPLQGYRLHVIDLD 60
           ++V   K KL    G+  + M LELY   +     L  +   LG Y    G R+HVID  
Sbjct: 32  LTVAEFKCKLQLVVGSPASCMELELYGPDDKFCCKLDQDDALLGSYPVDDGCRIHVIDHS 91

Query: 61  PSSVTSGGWLEDTSLVEKYTISEEEYSKRDGTFRKF--KEKVLSQNPSAVENKLSNNYM- 117
            + +   G  ED S VEKY IS+E Y +R  + R F  + K+   N      + + N   
Sbjct: 92  GARL---GEYEDISKVEKYEISQEAYEQRQDSIRSFLKRNKLGRFNEEERAQQEAENSQR 148

Query: 118 ----EDLCSNITVGDRCEV-DPGA--KRGVVKYVGQAESIAPGFWVGIQYDEPLGKHNGI 170
               E   S I VG RCEV  PG   +RG V YVG  +   PG+W+GI+YDEPLGK++G 
Sbjct: 149 LIEEEAQASTIPVGSRCEVRTPGQPPRRGTVMYVGLTD-FKPGYWIGIRYDEPLGKNDGS 207

Query: 171 VKGVRYFECPPLHGAMVRPDKVKVGDYPERD 201
           V G RYFEC   +GA V+P  V VGD+PE D
Sbjct: 208 VNGKRYFECQAKYGAFVKPSVVTVGDFPEED 238

Binds to alpha-tubulin folding intermediates after their interaction with cytosolic chaperonin in the pathway leading from newly synthesized tubulin to properly folded heterodimer. Involved in regulation of tubulin heterodimer dissociation. May function as a negative regulator of axonal growth.

Bos taurus (taxid: 9913)

>sp|Q99426|TBCB_HUMAN Tubulin-folding cofactor B OS=Homo sapiens GN=TBCB PE=1 SV=2

 Score =  130 bits (326), Expect = 8e-30,   Method: Compositional matrix adjust.
 Identities = 86/218 (39%), Positives = 114/218 (52%), Gaps = 15/218 (6%)

Query: 1   MSVESVKDKLWRKCGTSVNSMSLELYDDTNTKVAALTDNSRPLGFYSPLQGYRLHVIDLD 60
           +++   K KL    G+  + M LELY   +   + L      LG Y    G R+HVID  
Sbjct: 32  LTIAEFKCKLELLVGSPASCMELELYGVDDKFYSKLDQEDALLGSYPVDDGCRIHVIDHS 91

Query: 61  PSSVTSGGWLEDTSLVEKYTISEEEYSKRDGTFRKF-KEKVLSQNPSAVENKLSNNYMED 119
            + +   G  ED S VEKYTIS+E Y +R  T R F K   L +       +      + 
Sbjct: 92  GARL---GEYEDVSRVEKYTISQEAYDQRQDTVRSFLKRSKLGRYNEEERAQQEAEAAQR 148

Query: 120 LC------SNITVGDRCEVDPGA---KRGVVKYVGQAESIAPGFWVGIQYDEPLGKHNGI 170
           L       S+I VG RCEV       +RG V YVG  +   PG+W+G++YDEPLGK++G 
Sbjct: 149 LAEEKAQASSIPVGSRCEVRAAGQSPRRGTVMYVGLTD-FKPGYWIGVRYDEPLGKNDGS 207

Query: 171 VKGVRYFECPPLHGAMVRPDKVKVGDYPERDPFEEDEI 208
           V G RYFEC   +GA V+P  V VGD+PE D +  DEI
Sbjct: 208 VNGKRYFECQAKYGAFVKPAVVTVGDFPEED-YGLDEI 244

Binds to alpha-tubulin folding intermediates after their interaction with cytosolic chaperonin in the pathway leading from newly synthesized tubulin to properly folded heterodimer. Involved in regulation of tubulin heterodimer dissociation. May function as a negative regulator of axonal growth.

Homo sapiens (taxid: 9606)

>sp|Q54Z01|TBCB_DICDI Tubulin-specific chaperone B OS=Dictyostelium discoideum GN=tbcb PE=3 SV=1

 Score =  122 bits (305), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 79/215 (36%), Positives = 116/215 (53%), Gaps = 17/215 (7%)

Query: 1   MSVESVKDKLWRKCGTSVNSMSLELYDDT--NTKVAALTDNSRPLGFYSPLQGYRLHVID 58
           + ++  K+KL+R  GT    M L L D+   N       D+ + LG Y P  G  +H+ID
Sbjct: 58  LKIKDFKEKLYRFVGTEPKYMELILRDENKVNDICKIDDDDDKTLGSYEPKDGMNVHIID 117

Query: 59  LDPSSVTSGGWLEDTSLVEKYTISEEEYSKRDGTFRKFKEKVLSQNPSAVENKLSNNYME 118
            DP++  S   L+D S   K  ISEE+Y+KR+GT++K+KE+   +  +            
Sbjct: 118 KDPNNFVS--ELQDISKAPKPVISEEDYNKREGTYKKWKEENQLKKENDTTATTVTATTT 175

Query: 119 DLCS------NITVGDRCEV---DP---GAKRGVVKYVGQAESIAPGFWVGIQYDEPLGK 166
              +       I VGDRC+V   DP     + G V+YVG  E  + G W+G++ D PLGK
Sbjct: 176 TTNNATDTEIEIKVGDRCKVISDDPTNYDERLGKVQYVGTVE-FSSGVWIGVELDLPLGK 234

Query: 167 HNGIVKGVRYFECPPLHGAMVRPDKVKVGDYPERD 201
           ++G VKG +YF+C P +G   +P  V VGDYPE +
Sbjct: 235 NDGSVKGKQYFQCSPKYGCFAKPKNVLVGDYPEEE 269

Binds to alpha-tubulin folding intermediates after their interaction with cytosolic chaperonin in the pathway leading from newly synthesized tubulin to properly folded heterodimer.

Dictyostelium discoideum (taxid: 44689)

>sp|Q10235|ALP11_SCHPO Cell polarity protein alp11 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=alp11 PE=1 SV=1

 Score = 75.9 bits (185), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 47/143 (32%), Positives = 74/143 (51%), Gaps = 11/143 (7%)

Query: 70  LEDTSLVEKYTISEEEYSKRDGTFRKFKEK--VLSQNPSAVENKLSNNY-----MEDLCS 122
            +D S V+KY +  E+Y  R  +   +K++  +   NP    +K S        + DL  
Sbjct: 93  FDDLSQVDKYVMPREQYENRTDSVYAWKKRNQLGRFNPDFEASKASRQESLKRELVDLQK 152

Query: 123 NITVGDRCEVDPGAKRGVVKYVGQAESIA-PGFWVGIQYDEPLGKHNGIVKGVRYFECPP 181
           N+    RC    G + G ++Y+G    I     WVG+++DEP+GK++G V G RYF    
Sbjct: 153 NLN--SRC-CAAGERYGTIRYIGLVPEINNDNLWVGVEFDEPVGKNDGTVSGKRYFNAKN 209

Query: 182 LHGAMVRPDKVKVGDYPERDPFE 204
            HG+ +R  +V+VGD+P  D  E
Sbjct: 210 KHGSFLRSSEVEVGDFPPEDILE 232

Required for microtubule function and cell polarity. Involved in the proper folding of alpha-tubulin.

Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812)

>sp|Q9UDT6|CLIP2_HUMAN CAP-Gly domain-containing linker protein 2 OS=Homo sapiens GN=CLIP2 PE=1 SV=1

 Score = 75.9 bits (185), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 36/75 (48%), Positives = 50/75 (66%), Gaps = 2/75 (2%)

Query: 118 EDLCSNITVGDRCEVDPGAKRGVVKYVGQAESIAPGFWVGIQYDEPLGKHNGIVKGVRYF 177
           +D   +  VG+R  V+ G K GVV+Y+G+ +  APG W G+  D+P+GK++G V GVRYF
Sbjct: 73  DDFLGDFVVGERVWVN-GVKPGVVQYLGETQ-FAPGQWAGVVLDDPVGKNDGAVGGVRYF 130

Query: 178 ECPPLHGAMVRPDKV 192
           ECP L G   RP K+
Sbjct: 131 ECPALQGIFTRPSKL 145

Seems to link microtubules to dendritic lamellar body (DLB), a membranous organelle predominantly present in bulbous dendritic appendages of neurons linked by dendrodendritic gap junctions. May operates in the control of brain-specific organelle translocations.

Homo sapiens (taxid: 9606)

>sp|Q9Z0H8|CLIP2_MOUSE CAP-Gly domain-containing linker protein 2 OS=Mus musculus GN=Clip2 PE=1 SV=2

 Score = 75.5 bits (184), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 36/75 (48%), Positives = 50/75 (66%), Gaps = 2/75 (2%)

Query: 118 EDLCSNITVGDRCEVDPGAKRGVVKYVGQAESIAPGFWVGIQYDEPLGKHNGIVKGVRYF 177
           +D   +  VG+R  V+ G K GVV+Y+G+ +  APG W G+  D+P+GK++G V GVRYF
Sbjct: 74  DDFLGDFVVGERVWVN-GVKPGVVQYLGETQ-FAPGQWAGVVLDDPVGKNDGAVGGVRYF 131

Query: 178 ECPPLHGAMVRPDKV 192
           ECP L G   RP K+
Sbjct: 132 ECPALQGIFTRPSKL 146

Seems to link microtubules to dendritic lamellar body (DLB), a membranous organelle predominantly present in bulbous dendritic appendages of neurons linked by dendrodendritic gap junctions. May operates in the control of brain-specific organelle translocations.

Mus musculus (taxid: 10090)

>sp|O55156|CLIP2_RAT CAP-Gly domain-containing linker protein 2 OS=Rattus norvegicus GN=Clip2 PE=1 SV=1

 Score = 74.7 bits (182), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 35/75 (46%), Positives = 50/75 (66%), Gaps = 2/75 (2%)

Query: 118 EDLCSNITVGDRCEVDPGAKRGVVKYVGQAESIAPGFWVGIQYDEPLGKHNGIVKGVRYF 177
           +D   +  VG+R  V+ G K GVV+Y+G+ +  APG W G+  D+P+GK++G V G+RYF
Sbjct: 74  DDFLGDFVVGERVWVN-GVKPGVVQYLGETQ-FAPGQWAGVVLDDPVGKNDGAVGGLRYF 131

Query: 178 ECPPLHGAMVRPDKV 192
           ECP L G   RP K+
Sbjct: 132 ECPALQGIFTRPSKL 146

Seems to link microtubules to dendritic lamellar body (DLB), a membranous organelle predominantly present in bulbous dendritic appendages of neurons linked by dendrodendritic gap junctions. May operates in the control of brain-specific organelle translocations.

Rattus norvegicus (taxid: 10116)

>sp|Q96DZ5|CLIP3_HUMAN CAP-Gly domain-containing linker protein 3 OS=Homo sapiens GN=CLIP3 PE=1 SV=3

 Score = 71.6 bits (174), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 32/68 (47%), Positives = 46/68 (67%), Gaps = 2/68 (2%)

Query: 126 VGDRCEVDPGAKRGVVKYVGQAESIAPGFWVGIQYDEPLGKHNGIVKGVRYFECPPLHGA 185
           VGD+  V  G K+G+V++ G+ +  APG+W GI+ D+P GKH+G V GVRYF CPP HG 
Sbjct: 418 VGDQVLVA-GQKQGIVRFYGKTD-FAPGYWYGIELDQPTGKHDGSVFGVRYFTCPPRHGV 475

Query: 186 MVRPDKVK 193
                +++
Sbjct: 476 FAPASRIQ 483

Functions as a cytoplasmic linker protein. Involved in TGN-endosome dynamics.

Homo sapiens (taxid: 9606)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	208
255576538	243	tubulin-specific chaperone B, putative [	0.995	0.851	0.806	1e-101
224086851	243	tubulin folding cofactor [Populus tricho	0.995	0.851	0.801	2e-99
225441260	242	PREDICTED: tubulin-specific chaperone B	1.0	0.859	0.812	5e-99
297829550	243	tubulin folding cofactor B [Arabidopsis	1.0	0.855	0.778	1e-96
225441262	243	PREDICTED: tubulin-specific chaperone B	1.0	0.855	0.799	4e-96
449449791	245	PREDICTED: tubulin-specific chaperone B-	1.0	0.848	0.785	5e-96
22330955	243	tubulin folding cofactor B [Arabidopsis	1.0	0.855	0.774	9e-96
51971605	243	tubulin folding cofactor B [Arabidopsis	1.0	0.855	0.774	2e-95
20514259	243	tubulin folding cofactor B [Arabidopsis	1.0	0.855	0.769	5e-95
388508528	243	unknown [Lotus japonicus]	1.0	0.855	0.769	2e-94

>gi|255576538|ref|XP_002529160.1| tubulin-specific chaperone B, putative [Ricinus communis] gi|223531384|gb|EEF33219.1| tubulin-specific chaperone B, putative [Ricinus communis]

 Score =  372 bits (954), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 167/207 (80%), Positives = 196/207 (94%)

Query: 2   SVESVKDKLWRKCGTSVNSMSLELYDDTNTKVAALTDNSRPLGFYSPLQGYRLHVIDLDP 61
           +VESVK+KLWRKCGTSVNSM+L+LYDDTN+K+  L+D+SRPLGFYSPL GYR+HVID+DP
Sbjct: 37  TVESVKEKLWRKCGTSVNSMTLQLYDDTNSKICDLSDDSRPLGFYSPLDGYRIHVIDVDP 96

Query: 62  SSVTSGGWLEDTSLVEKYTISEEEYSKRDGTFRKFKEKVLSQNPSAVENKLSNNYMEDLC 121
           SSVTSGGWLEDTSLVEKYTISEE Y KR GTFRKFKEK++SQNPSA E K++ NYMEDLC
Sbjct: 97  SSVTSGGWLEDTSLVEKYTISEEAYEKRGGTFRKFKEKLVSQNPSAFEPKITENYMEDLC 156

Query: 122 SNITVGDRCEVDPGAKRGVVKYVGQAESIAPGFWVGIQYDEPLGKHNGIVKGVRYFECPP 181
           +NI +GDRCEV+PGAKRG+VK+VG+AES+APGFWVG+QYDEPLGKH+G+VKGVRYF+CPP
Sbjct: 157 ANIKLGDRCEVEPGAKRGIVKFVGRAESLAPGFWVGVQYDEPLGKHDGLVKGVRYFDCPP 216

Query: 182 LHGAMVRPDKVKVGDYPERDPFEEDEI 208
           LHG M+RPDK+KVGDYPERDPFE++EI
Sbjct: 217 LHGGMIRPDKIKVGDYPERDPFEDEEI 243

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224086851|ref|XP_002307984.1| tubulin folding cofactor [Populus trichocarpa] gi|118483420|gb|ABK93610.1| unknown [Populus trichocarpa] gi|222853960|gb|EEE91507.1| tubulin folding cofactor [Populus trichocarpa]

 Score =  367 bits (941), Expect = 2e-99,   Method: Compositional matrix adjust.
 Identities = 166/207 (80%), Positives = 190/207 (91%)

Query: 2   SVESVKDKLWRKCGTSVNSMSLELYDDTNTKVAALTDNSRPLGFYSPLQGYRLHVIDLDP 61
           SVE+VKDKLWRKCGTSVNSM LELYDD N+KV+ LTD+SRPLGFYSP  GYRLH+IDLDP
Sbjct: 37  SVEAVKDKLWRKCGTSVNSMQLELYDDANSKVSNLTDDSRPLGFYSPFDGYRLHIIDLDP 96

Query: 62  SSVTSGGWLEDTSLVEKYTISEEEYSKRDGTFRKFKEKVLSQNPSAVENKLSNNYMEDLC 121
           SSVT+GGWLED S VEKY+ISEE Y KRDGTFRKFKEK+ +QNPSA   K++++YMEDLC
Sbjct: 97  SSVTAGGWLEDISSVEKYSISEEAYDKRDGTFRKFKEKMAAQNPSAFAPKITDDYMEDLC 156

Query: 122 SNITVGDRCEVDPGAKRGVVKYVGQAESIAPGFWVGIQYDEPLGKHNGIVKGVRYFECPP 181
           +NI VGDRCE+DPG KRGVVKYVG+AES+APGFWVG+Q+DEP GKH+G+VKGVRYF+ PP
Sbjct: 157 ANIKVGDRCEIDPGEKRGVVKYVGRAESLAPGFWVGVQFDEPFGKHDGMVKGVRYFDSPP 216

Query: 182 LHGAMVRPDKVKVGDYPERDPFEEDEI 208
           LHGAM+RPDKVKVGDYPERDPFEE+EI
Sbjct: 217 LHGAMIRPDKVKVGDYPERDPFEEEEI 243

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225441260|ref|XP_002274343.1| PREDICTED: tubulin-specific chaperone B isoform 1 [Vitis vinifera] gi|359482231|ref|XP_003632738.1| PREDICTED: tubulin-specific chaperone B [Vitis vinifera] gi|297739921|emb|CBI30103.3| unnamed protein product [Vitis vinifera]

 Score =  365 bits (938), Expect = 5e-99,   Method: Compositional matrix adjust.
 Identities = 169/208 (81%), Positives = 190/208 (91%)

Query: 1   MSVESVKDKLWRKCGTSVNSMSLELYDDTNTKVAALTDNSRPLGFYSPLQGYRLHVIDLD 60
           M+VESVKDKLWRKCGTSVNSM LELYDDT  K++ L+DN RPLGFYSP  GYRLHVIDLD
Sbjct: 35  MTVESVKDKLWRKCGTSVNSMCLELYDDTGAKISVLSDNLRPLGFYSPQDGYRLHVIDLD 94

Query: 61  PSSVTSGGWLEDTSLVEKYTISEEEYSKRDGTFRKFKEKVLSQNPSAVENKLSNNYMEDL 120
           PSSVTSGGWLEDTSLVEKY+ISEE Y K DGTFRKFKEK+  QNPS +E+K+S++YM DL
Sbjct: 95  PSSVTSGGWLEDTSLVEKYSISEEAYEKLDGTFRKFKEKLAFQNPSILESKISDHYMGDL 154

Query: 121 CSNITVGDRCEVDPGAKRGVVKYVGQAESIAPGFWVGIQYDEPLGKHNGIVKGVRYFECP 180
           C+NI VGDRCEV+PG KRGVVK+VG+A+S+APGFWVG+QYDEPLGKH+G+VKG RYF+CP
Sbjct: 155 CANIKVGDRCEVEPGEKRGVVKFVGRAQSLAPGFWVGVQYDEPLGKHDGMVKGTRYFDCP 214

Query: 181 PLHGAMVRPDKVKVGDYPERDPFEEDEI 208
           PLHGAMVRPDKVKVGDYPERD FEEDEI
Sbjct: 215 PLHGAMVRPDKVKVGDYPERDLFEEDEI 242

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297829550|ref|XP_002882657.1| tubulin folding cofactor B [Arabidopsis lyrata subsp. lyrata] gi|297328497|gb|EFH58916.1| tubulin folding cofactor B [Arabidopsis lyrata subsp. lyrata]

 Score =  357 bits (917), Expect = 1e-96,   Method: Compositional matrix adjust.
 Identities = 162/208 (77%), Positives = 188/208 (90%)

Query: 1   MSVESVKDKLWRKCGTSVNSMSLELYDDTNTKVAALTDNSRPLGFYSPLQGYRLHVIDLD 60
           MSVE+VK+KLW+KCGTSVNSM+LELYDD+ +KVA L+DNSRPLGF+SP  G+RLH+IDLD
Sbjct: 36  MSVEAVKEKLWKKCGTSVNSMALELYDDSGSKVAVLSDNSRPLGFFSPFDGFRLHIIDLD 95

Query: 61  PSSVTSGGWLEDTSLVEKYTISEEEYSKRDGTFRKFKEKVLSQNPSAVENKLSNNYMEDL 120
           PSSVT+GGWLEDTSLVEKY ISEE+Y+KR  +FRKFKEK +SQ P+A E K   NYMEDL
Sbjct: 96  PSSVTTGGWLEDTSLVEKYNISEEDYAKRTDSFRKFKEKRVSQIPAAAEAKTKENYMEDL 155

Query: 121 CSNITVGDRCEVDPGAKRGVVKYVGQAESIAPGFWVGIQYDEPLGKHNGIVKGVRYFECP 180
           C+NI VGDRC+V+PG KRG+VKYVG+AES+ PG+WVGIQYDEPLGKH+G+VKG R+FECP
Sbjct: 156 CANIKVGDRCQVEPGEKRGMVKYVGRAESLGPGYWVGIQYDEPLGKHDGMVKGTRFFECP 215

Query: 181 PLHGAMVRPDKVKVGDYPERDPFEEDEI 208
           PL G MVRPDKVKVGDYPERDPFEEDEI
Sbjct: 216 PLQGGMVRPDKVKVGDYPERDPFEEDEI 243

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225441262|ref|XP_002274425.1| PREDICTED: tubulin-specific chaperone B isoform 2 [Vitis vinifera]

 Score =  355 bits (912), Expect = 4e-96,   Method: Compositional matrix adjust.
 Identities = 167/209 (79%), Positives = 189/209 (90%), Gaps = 1/209 (0%)

Query: 1   MSVESVKDKLWRKCGTSVNSMSLELYDDTNTKVAALTDNSRPLGFYSPLQGYRLHVIDLD 60
           M+VESVKDKLWRKCGTSVNSM LELYDDT  K++ L+DN RPLGFYSP  GYRLHVIDLD
Sbjct: 35  MTVESVKDKLWRKCGTSVNSMCLELYDDTGAKISVLSDNLRPLGFYSPQDGYRLHVIDLD 94

Query: 61  PSSVTSGGWLEDTSLVEKYTISEEEYSKRDGTFRKFKEKVLSQNPSA-VENKLSNNYMED 119
           PSSVTSGGWLEDTSLVEKY+ISEE Y K DGTFRKFKEK+  QNPS+ +  ++S++YM D
Sbjct: 95  PSSVTSGGWLEDTSLVEKYSISEEAYEKLDGTFRKFKEKLAFQNPSSDLCLQISDHYMGD 154

Query: 120 LCSNITVGDRCEVDPGAKRGVVKYVGQAESIAPGFWVGIQYDEPLGKHNGIVKGVRYFEC 179
           LC+NI VGDRCEV+PG KRGVVK+VG+A+S+APGFWVG+QYDEPLGKH+G+VKG RYF+C
Sbjct: 155 LCANIKVGDRCEVEPGEKRGVVKFVGRAQSLAPGFWVGVQYDEPLGKHDGMVKGTRYFDC 214

Query: 180 PPLHGAMVRPDKVKVGDYPERDPFEEDEI 208
           PPLHGAMVRPDKVKVGDYPERD FEEDEI
Sbjct: 215 PPLHGAMVRPDKVKVGDYPERDLFEEDEI 243

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449449791|ref|XP_004142648.1| PREDICTED: tubulin-specific chaperone B-like [Cucumis sativus]

 Score =  355 bits (912), Expect = 5e-96,   Method: Compositional matrix adjust.
 Identities = 165/210 (78%), Positives = 190/210 (90%), Gaps = 2/210 (0%)

Query: 1   MSVESVKDKLWRKCGTSVNSMSLELYDDTNTKVAALTDNSRPLGFYSPLQGYRLHVIDLD 60
           MSVESVK+KLWRKCGTSVNSM LELYDD+ +K++ LTDN  PLGFYSPL GYRLH+IDLD
Sbjct: 36  MSVESVKEKLWRKCGTSVNSMCLELYDDSGSKISDLTDNCIPLGFYSPLDGYRLHIIDLD 95

Query: 61  PSSVTSGGWLEDTSLVEKYTISEEEYSKRDGTFRKFKEKVLSQNPSAVENKLSNNYMEDL 120
           PSSVTSGGWLEDTSLVEK+ ISEE Y KRD TFRKFKEK+ SQNPSA E+K+S+NYME+L
Sbjct: 96  PSSVTSGGWLEDTSLVEKFQISEEAYDKRDDTFRKFKEKLASQNPSAFESKISDNYMEEL 155

Query: 121 CSNITVGDRCEVDPGAKRGVVKYVGQAESIAPGFWVGIQYDEPLGKHNGIVKGVRYFECP 180
           C+NI VGDRC+V+PG KRGVVK+VG+AES+APGFWVG+QYDEPLGK++G VKG+ YF+C 
Sbjct: 156 CANIKVGDRCQVEPGEKRGVVKFVGRAESLAPGFWVGVQYDEPLGKNDGTVKGIHYFDCS 215

Query: 181 PLHGAMVRPDKVKVGDYPERDPF--EEDEI 208
           P HGAMVRPDKVKVG+YPERDPF  E+DEI
Sbjct: 216 PFHGAMVRPDKVKVGNYPERDPFDDEDDEI 245

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|22330955|ref|NP_187633.2| tubulin folding cofactor B [Arabidopsis thaliana] gi|51970508|dbj|BAD43946.1| tubulin folding cofactor B [Arabidopsis thaliana] gi|51970674|dbj|BAD44029.1| tubulin folding cofactor B [Arabidopsis thaliana] gi|332641352|gb|AEE74873.1| tubulin folding cofactor B [Arabidopsis thaliana]

 Score =  355 bits (910), Expect = 9e-96,   Method: Compositional matrix adjust.
 Identities = 161/208 (77%), Positives = 187/208 (89%)

Query: 1   MSVESVKDKLWRKCGTSVNSMSLELYDDTNTKVAALTDNSRPLGFYSPLQGYRLHVIDLD 60
           MSVE+VK+KLW+KCGTSVNSM+LELYDD+ +KVA L+D+SRPLGF+SP  G+RLH+IDLD
Sbjct: 36  MSVEAVKEKLWKKCGTSVNSMALELYDDSGSKVAVLSDDSRPLGFFSPFDGFRLHIIDLD 95

Query: 61  PSSVTSGGWLEDTSLVEKYTISEEEYSKRDGTFRKFKEKVLSQNPSAVENKLSNNYMEDL 120
           PSSVT+GGWLEDTSLVEKY ISEE+Y+KR  +FRKFKEK +SQNP A E K   NYMEDL
Sbjct: 96  PSSVTTGGWLEDTSLVEKYNISEEDYAKRTDSFRKFKEKRVSQNPVAAEAKTKENYMEDL 155

Query: 121 CSNITVGDRCEVDPGAKRGVVKYVGQAESIAPGFWVGIQYDEPLGKHNGIVKGVRYFECP 180
           C+NI VGDRC+V+PG KRG+VKYVG+AES+ PG+WVGIQYDEPLGKH+G+VKG R+FECP
Sbjct: 156 CANIKVGDRCQVEPGEKRGMVKYVGRAESLGPGYWVGIQYDEPLGKHDGMVKGTRFFECP 215

Query: 181 PLHGAMVRPDKVKVGDYPERDPFEEDEI 208
            L G MVRPDKVKVGDYPERDPFEEDEI
Sbjct: 216 RLQGGMVRPDKVKVGDYPERDPFEEDEI 243

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|51971605|dbj|BAD44467.1| tubulin folding cofactor B [Arabidopsis thaliana]

 Score =  353 bits (907), Expect = 2e-95,   Method: Compositional matrix adjust.
 Identities = 161/208 (77%), Positives = 186/208 (89%)

Query: 1   MSVESVKDKLWRKCGTSVNSMSLELYDDTNTKVAALTDNSRPLGFYSPLQGYRLHVIDLD 60
           MSVE+VK KLW+KCGTSVNSM+LELYDD+ +KVA L+D+SRPLGF+SP  G+RLH+IDLD
Sbjct: 36  MSVEAVKGKLWKKCGTSVNSMALELYDDSGSKVAVLSDDSRPLGFFSPFDGFRLHIIDLD 95

Query: 61  PSSVTSGGWLEDTSLVEKYTISEEEYSKRDGTFRKFKEKVLSQNPSAVENKLSNNYMEDL 120
           PSSVT+GGWLEDTSLVEKY ISEE+Y+KR  +FRKFKEK +SQNP A E K   NYMEDL
Sbjct: 96  PSSVTTGGWLEDTSLVEKYNISEEDYAKRTDSFRKFKEKRVSQNPVAAEAKTKENYMEDL 155

Query: 121 CSNITVGDRCEVDPGAKRGVVKYVGQAESIAPGFWVGIQYDEPLGKHNGIVKGVRYFECP 180
           C+NI VGDRC+V+PG KRG+VKYVG+AES+ PG+WVGIQYDEPLGKH+G+VKG R+FECP
Sbjct: 156 CANIKVGDRCQVEPGEKRGMVKYVGRAESLGPGYWVGIQYDEPLGKHDGMVKGTRFFECP 215

Query: 181 PLHGAMVRPDKVKVGDYPERDPFEEDEI 208
            L G MVRPDKVKVGDYPERDPFEEDEI
Sbjct: 216 RLQGGMVRPDKVKVGDYPERDPFEEDEI 243

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|20514259|gb|AAM22958.1|AF486849_1 tubulin folding cofactor B [Arabidopsis thaliana]

 Score =  352 bits (903), Expect = 5e-95,   Method: Compositional matrix adjust.
 Identities = 160/208 (76%), Positives = 186/208 (89%)

Query: 1   MSVESVKDKLWRKCGTSVNSMSLELYDDTNTKVAALTDNSRPLGFYSPLQGYRLHVIDLD 60
           MSVE+VK+KLW+KCGTSVNSM+LELYDD+ +KVA L+D+ RPLGF+SP  G+RLH+IDLD
Sbjct: 36  MSVEAVKEKLWKKCGTSVNSMALELYDDSGSKVAVLSDDFRPLGFFSPFDGFRLHIIDLD 95

Query: 61  PSSVTSGGWLEDTSLVEKYTISEEEYSKRDGTFRKFKEKVLSQNPSAVENKLSNNYMEDL 120
           PSSVT+GGWLEDTSLVEKY ISEE+Y+KR  +FRKFKEK +SQNP A E K   NYMEDL
Sbjct: 96  PSSVTTGGWLEDTSLVEKYNISEEDYAKRTDSFRKFKEKRVSQNPVAAEAKTKENYMEDL 155

Query: 121 CSNITVGDRCEVDPGAKRGVVKYVGQAESIAPGFWVGIQYDEPLGKHNGIVKGVRYFECP 180
           C+NI VGDRC+V+PG KRG+VKYVG+AES+ PG+WVGIQYDEPLGKH+G+VKG R+FECP
Sbjct: 156 CANIKVGDRCQVEPGEKRGMVKYVGRAESLGPGYWVGIQYDEPLGKHDGMVKGTRFFECP 215

Query: 181 PLHGAMVRPDKVKVGDYPERDPFEEDEI 208
            L G MVRPDKVKVGDYPERDPFEEDEI
Sbjct: 216 RLQGGMVRPDKVKVGDYPERDPFEEDEI 243

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388508528|gb|AFK42330.1| unknown [Lotus japonicus]

 Score =  350 bits (898), Expect = 2e-94,   Method: Compositional matrix adjust.
 Identities = 160/208 (76%), Positives = 186/208 (89%)

Query: 1   MSVESVKDKLWRKCGTSVNSMSLELYDDTNTKVAALTDNSRPLGFYSPLQGYRLHVIDLD 60
           ++VE+VK+KLW+KCGTSVNSM LELYDDT+ K+  LTDNS+PLGFYSPL G+RLHV+DLD
Sbjct: 36  LTVEAVKEKLWKKCGTSVNSMHLELYDDTHVKITDLTDNSKPLGFYSPLDGFRLHVVDLD 95

Query: 61  PSSVTSGGWLEDTSLVEKYTISEEEYSKRDGTFRKFKEKVLSQNPSAVENKLSNNYMEDL 120
           PSSVTSGGWLEDTSLVEKY ISEE ++KR+GTFRK+KEK+ SQ PS VE K+ +NYMEDL
Sbjct: 96  PSSVTSGGWLEDTSLVEKYQISEEAFNKREGTFRKYKEKLTSQIPSNVEAKIPDNYMEDL 155

Query: 121 CSNITVGDRCEVDPGAKRGVVKYVGQAESIAPGFWVGIQYDEPLGKHNGIVKGVRYFECP 180
           C +I VG RCEV+PG KRGVV +VG+AE + PGFWVG+QYDEPLGKH+G+VKGVRYFECP
Sbjct: 156 CVDIKVGSRCEVEPGGKRGVVTFVGRAEPLGPGFWVGVQYDEPLGKHDGMVKGVRYFECP 215

Query: 181 PLHGAMVRPDKVKVGDYPERDPFEEDEI 208
           P HG +VRP KVKVGDYPERDPFEEDEI
Sbjct: 216 PFHGGIVRPGKVKVGDYPERDPFEEDEI 243

Source: Lotus japonicus

Species: Lotus japonicus

Genus: Lotus

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	208
TAIR|locus:2076224	243	EMB2804 "AT3G10220" [Arabidops	1.0	0.855	0.774	2.5e-90
DICTYBASE|DDB_G0277983	270	tbcB "tubulin folding cofactor	0.951	0.733	0.376	8.5e-33
MGI|MGI:1913661	244	Tbcb "tubulin folding cofactor	0.966	0.823	0.404	1.8e-32
ZFIN|ZDB-GENE-030131-9296	246	tbcb "tubulin folding cofactor	0.975	0.825	0.394	1.8e-32
UNIPROTKB|Q8HXL4	244	CKAP1 "Uncharacterized protein	0.975	0.831	0.408	2.9e-32
UNIPROTKB|Q5E951	244	TBCB "Tubulin-folding cofactor	0.975	0.831	0.408	7.7e-32
UNIPROTKB|Q99426	244	TBCB "Tubulin-folding cofactor	0.975	0.831	0.399	1.6e-31
RGD|1309965	244	Tbcb "tubulin folding cofactor	0.961	0.819	0.410	2.6e-31
FB|FBgn0034451	271	TBCB "tubulin-binding cofactor	0.961	0.738	0.325	3.3e-24
CGD|CAL0005089	282	orf19.2828 [Candida albicans (	0.649	0.478	0.351	9e-22

TAIR|locus:2076224 EMB2804 "AT3G10220" [Arabidopsis thaliana (taxid:3702)]

 Score = 901 (322.2 bits), Expect = 2.5e-90, P = 2.5e-90
 Identities = 161/208 (77%), Positives = 187/208 (89%)

Query:     1 MSVESVKDKLWRKCGTSVNSMSLELYDDTNTKVAALTDNSRPLGFYSPLQGYRLHVIDLD 60
             MSVE+VK+KLW+KCGTSVNSM+LELYDD+ +KVA L+D+SRPLGF+SP  G+RLH+IDLD
Sbjct:    36 MSVEAVKEKLWKKCGTSVNSMALELYDDSGSKVAVLSDDSRPLGFFSPFDGFRLHIIDLD 95

Query:    61 PSSVTSGGWLEDTSLVEKYTISEEEYSKRDGTFRKFKEKVLSQNPSAVENKLSNNYMEDL 120
             PSSVT+GGWLEDTSLVEKY ISEE+Y+KR  +FRKFKEK +SQNP A E K   NYMEDL
Sbjct:    96 PSSVTTGGWLEDTSLVEKYNISEEDYAKRTDSFRKFKEKRVSQNPVAAEAKTKENYMEDL 155

Query:   121 CSNITVGDRCEVDPGAKRGVVKYVGQAESIAPGFWVGIQYDEPLGKHNGIVKGVRYFECP 180
             C+NI VGDRC+V+PG KRG+VKYVG+AES+ PG+WVGIQYDEPLGKH+G+VKG R+FECP
Sbjct:   156 CANIKVGDRCQVEPGEKRGMVKYVGRAESLGPGYWVGIQYDEPLGKHDGMVKGTRFFECP 215

Query:   181 PLHGAMVRPDKVKVGDYPERDPFEEDEI 208
              L G MVRPDKVKVGDYPERDPFEEDEI
Sbjct:   216 RLQGGMVRPDKVKVGDYPERDPFEEDEI 243

GO:0003674 "molecular_function" evidence=ND

GO:0005737 "cytoplasm" evidence=ISM;IDA

GO:0007021 "tubulin complex assembly" evidence=ISS

GO:0005634 "nucleus" evidence=IDA

GO:0009524 "phragmoplast" evidence=IDA

GO:0009790 "embryo development" evidence=IMP

GO:0051301 "cell division" evidence=IMP

DICTYBASE|DDB_G0277983 tbcB "tubulin folding cofactor B" [Dictyostelium discoideum (taxid:44689)]

 Score = 358 (131.1 bits), Expect = 8.5e-33, P = 8.5e-33
 Identities = 81/215 (37%), Positives = 121/215 (56%)

Query:     1 MSVESVKDKLWRKCGTSVNSMSLELYDDTNTK-VAALTDNS-RPLGFYSPLQGYRLHVID 58
             + ++  K+KL+R  GT    M L L D+     +  + D+  + LG Y P  G  +H+ID
Sbjct:    58 LKIKDFKEKLYRFVGTEPKYMELILRDENKVNDICKIDDDDDKTLGSYEPKDGMNVHIID 117

Query:    59 LDPSSVTSGGWLEDTSLVEKYTISEEEYSKRDGTFRKFKEK--VLSQNPSAVEN----KL 112
              DP++  S   L+D S   K  ISEE+Y+KR+GT++K+KE+  +  +N +          
Sbjct:   118 KDPNNFVSE--LQDISKAPKPVISEEDYNKREGTYKKWKEENQLKKENDTTATTVTATTT 175

Query:   113 SNNYMEDLCSNITVGDRCEV---DP---GAKRGVVKYVGQAESIAPGFWVGIQYDEPLGK 166
             + N   D    I VGDRC+V   DP     + G V+YVG  E  + G W+G++ D PLGK
Sbjct:   176 TTNNATDTEIEIKVGDRCKVISDDPTNYDERLGKVQYVGTVE-FSSGVWIGVELDLPLGK 234

Query:   167 HNGIVKGVRYFECPPLHGAMVRPDKVKVGDYPERD 201
             ++G VKG +YF+C P +G   +P  V VGDYPE +
Sbjct:   235 NDGSVKGKQYFQCSPKYGCFAKPKNVLVGDYPEEE 269

GO:0005874 "microtubule" evidence=IEA

GO:0005856 "cytoskeleton" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

MGI|MGI:1913661 Tbcb "tubulin folding cofactor B" [Mus musculus (taxid:10090)]

 Score = 355 (130.0 bits), Expect = 1.8e-32, P = 1.8e-32
 Identities = 89/220 (40%), Positives = 118/220 (53%)

Query:     1 MSVESVKDKLWRKCGTSVNSMSLELYDDTNTKVAALTDNSRPLGFYSPLQGYRLHVIDLD 60
             +++   K KL    G+  + M LELY   +   + L      LG Y    G R+HVID  
Sbjct:    32 LTIAEFKCKLELVVGSPASCMELELYGADDKFYSKLDQEDALLGSYPVDDGCRIHVID-- 89

Query:    61 PSSVTSGGWLEDTSLVEKYTISEEEYSKRDGTFRKF---------KEKVLSQNPSAVENK 111
              S V  G + ED S VEKY IS E Y +R  T R F          E++ +Q  +    +
Sbjct:    90 HSGVRLGEY-EDVSKVEKYEISPEAYERRQNTVRSFMKRSKLGPYNEELRAQQEAEAAQR 148

Query:   112 LSNNYMEDLCSNITVGDRCEV---DPGAKRGVVKYVGQAESIAPGFWVGIQYDEPLGKHN 168
             LS    +   S I+VG RCEV   D   +RG V YVG  +   PG+WVG++YDEPLGK++
Sbjct:   149 LSEEKAQ--ASAISVGSRCEVRAPDHSLRRGTVMYVGLTD-FKPGYWVGVRYDEPLGKND 205

Query:   169 GIVKGVRYFECPPLHGAMVRPDKVKVGDYPERDPFEEDEI 208
             G V G RYFEC   +GA V+P  V VGD+PE D +  DE+
Sbjct:   206 GSVNGKRYFECQAKYGAFVKPSAVTVGDFPEED-YGLDEM 244

GO:0005737 "cytoplasm" evidence=IEA

GO:0005856 "cytoskeleton" evidence=IEA

GO:0005874 "microtubule" evidence=IEA

GO:0007275 "multicellular organismal development" evidence=IEA

GO:0007399 "nervous system development" evidence=IEA

GO:0030154 "cell differentiation" evidence=IEA

ZFIN|ZDB-GENE-030131-9296 tbcb "tubulin folding cofactor B" [Danio rerio (taxid:7955)]

 Score = 355 (130.0 bits), Expect = 1.8e-32, P = 1.8e-32
 Identities = 86/218 (39%), Positives = 119/218 (54%)

Query:     1 MSVESVKDKLWRKCGTSVNSMSLELYDDTNTKVAALTDNSRPLGFYSPLQGYRLHVIDLD 60
             +++   K KL    GT  + M L+L+  ++  +  L +N   LG Y      R+HV D  
Sbjct:    34 ITIAEFKSKLELIVGTPASCMDLDLFSSSDKFLQKLDNNEALLGSYHVDDDCRIHVTD-- 91

Query:    61 PSSVTSGGWLEDTSLVEKYTISEEEYSKRDGTFRKFKEKVL-----SQNPSAVENKLSNN 115
               S T  G   D S VEK+ IS+E Y KR  + R FK+ +       +  +  E  ++  
Sbjct:    92 -RSGTQSGEFTDLSKVEKFEISDEAYEKRADSIRNFKKNMKLGRFNEEERAKQEEAVAKK 150

Query:   116 YMED--LCSNITVGDRCEVD-PG--AKRGVVKYVGQAESIAPGFWVGIQYDEPLGKHNGI 170
               E+      I VG+RC+V  PG   K G V YVG A+   PG+WVG++YDEPLGKH+G 
Sbjct:   151 EEEEKVAAEAIAVGNRCKVQVPGQATKIGTVMYVGTAD-FKPGYWVGVKYDEPLGKHDGS 209

Query:   171 VKGVRYFECPPLHGAMVRPDKVKVGDYPERDPFEEDEI 208
             V G RYFEC P +GA V+P  V VGD+PE D +  DE+
Sbjct:   210 VNGKRYFECEPKYGAFVKPLTVTVGDFPEED-YGLDEM 246

GO:0008150 "biological_process" evidence=ND

GO:0003674 "molecular_function" evidence=ND

UNIPROTKB|Q8HXL4 CKAP1 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 353 (129.3 bits), Expect = 2.9e-32, P = 2.9e-32
 Identities = 89/218 (40%), Positives = 118/218 (54%)

Query:     1 MSVESVKDKLWRKCGTSVNSMSLELYDDTNTKVAALTDNSRPLGFYSPLQGYRLHVIDLD 60
             ++V   KDKL    G+  + M LELY   +     L      LG Y    G R+HVID  
Sbjct:    32 LTVAEFKDKLQLVVGSPASCMELELYGPDDKFYVKLDQEDALLGSYPVDDGCRIHVIDHS 91

Query:    61 PSSVTSGGWLEDTSLVEKYTISEEEYSKRDGTFRKF-KEKVLS----QNPSAVENKLSNN 115
              + +   G  ED S VEKY IS+E Y +R  + R F K   L     +  +  E + S  
Sbjct:    92 GARL---GEYEDMSKVEKYKISQEAYDQRQNSVRSFLKRNKLGRYNEEERAQREAESSQR 148

Query:   116 YMED--LCSNITVGDRCEVD-PGA--KRGVVKYVGQAESIAPGFWVGIQYDEPLGKHNGI 170
              +E+    S I VG RCEV  PG   +RG V YVG  +   PG+W+G++YDEPLGK++G 
Sbjct:   149 LIEEEAQASAIPVGSRCEVRAPGQPPRRGTVMYVGLTD-FKPGYWIGVRYDEPLGKNDGS 207

Query:   171 VKGVRYFECPPLHGAMVRPDKVKVGDYPERDPFEEDEI 208
             V G RYFEC   +GA V+P  V VGD+PE D +  DE+
Sbjct:   208 VNGKRYFECQAKYGAFVKPSVVTVGDFPEED-YGLDEM 244

GO:0005737 "cytoplasm" evidence=IEA

UNIPROTKB|Q5E951 TBCB "Tubulin-folding cofactor B" [Bos taurus (taxid:9913)]

 Score = 349 (127.9 bits), Expect = 7.7e-32, P = 7.7e-32
 Identities = 89/218 (40%), Positives = 118/218 (54%)

Query:     1 MSVESVKDKLWRKCGTSVNSMSLELYDDTNTKVAALTDNSRPLGFYSPLQGYRLHVIDLD 60
             ++V   K KL    G+  + M LELY   +     L  +   LG Y    G R+HVID  
Sbjct:    32 LTVAEFKCKLQLVVGSPASCMELELYGPDDKFCCKLDQDDALLGSYPVDDGCRIHVIDHS 91

Query:    61 PSSVTSGGWLEDTSLVEKYTISEEEYSKRDGTFRKF-KEKVLS----QNPSAVENKLSNN 115
              + +   G  ED S VEKY IS+E Y +R  + R F K   L     +  +  E + S  
Sbjct:    92 GARL---GEYEDISKVEKYEISQEAYEQRQDSIRSFLKRNKLGRFNEEERAQQEAENSQR 148

Query:   116 YMED--LCSNITVGDRCEV-DPGA--KRGVVKYVGQAESIAPGFWVGIQYDEPLGKHNGI 170
              +E+    S I VG RCEV  PG   +RG V YVG  +   PG+W+GI+YDEPLGK++G 
Sbjct:   149 LIEEEAQASTIPVGSRCEVRTPGQPPRRGTVMYVGLTD-FKPGYWIGIRYDEPLGKNDGS 207

Query:   171 VKGVRYFECPPLHGAMVRPDKVKVGDYPERDPFEEDEI 208
             V G RYFEC   +GA V+P  V VGD+PE D +  DE+
Sbjct:   208 VNGKRYFECQAKYGAFVKPSVVTVGDFPEED-YGLDEM 244

GO:0007023 "post-chaperonin tubulin folding pathway" evidence=TAS

GO:0005829 "cytosol" evidence=TAS

GO:0030154 "cell differentiation" evidence=IEA

GO:0007399 "nervous system development" evidence=IEA

GO:0005874 "microtubule" evidence=IEA

UNIPROTKB|Q99426 TBCB "Tubulin-folding cofactor B" [Homo sapiens (taxid:9606)]

 Score = 346 (126.9 bits), Expect = 1.6e-31, P = 1.6e-31
 Identities = 87/218 (39%), Positives = 117/218 (53%)

Query:     1 MSVESVKDKLWRKCGTSVNSMSLELYDDTNTKVAALTDNSRPLGFYSPLQGYRLHVIDLD 60
             +++   K KL    G+  + M LELY   +   + L      LG Y    G R+HVID  
Sbjct:    32 LTIAEFKCKLELLVGSPASCMELELYGVDDKFYSKLDQEDALLGSYPVDDGCRIHVIDHS 91

Query:    61 PSSVTSGGWLEDTSLVEKYTISEEEYSKRDGTFRKF-KEKVLS----QNPSAVENKLSNN 115
              + +   G  ED S VEKYTIS+E Y +R  T R F K   L     +  +  E + +  
Sbjct:    92 GARL---GEYEDVSRVEKYTISQEAYDQRQDTVRSFLKRSKLGRYNEEERAQQEAEAAQR 148

Query:   116 YMEDLC--SNITVGDRCEVDPGA---KRGVVKYVGQAESIAPGFWVGIQYDEPLGKHNGI 170
               E+    S+I VG RCEV       +RG V YVG  +   PG+W+G++YDEPLGK++G 
Sbjct:   149 LAEEKAQASSIPVGSRCEVRAAGQSPRRGTVMYVGLTD-FKPGYWIGVRYDEPLGKNDGS 207

Query:   171 VKGVRYFECPPLHGAMVRPDKVKVGDYPERDPFEEDEI 208
             V G RYFEC   +GA V+P  V VGD+PE D +  DEI
Sbjct:   208 VNGKRYFECQAKYGAFVKPAVVTVGDFPEED-YGLDEI 244

GO:0005874 "microtubule" evidence=IEA

GO:0007399 "nervous system development" evidence=IEA

GO:0030154 "cell differentiation" evidence=IEA

GO:0015630 "microtubule cytoskeleton" evidence=TAS

GO:0051084 "'de novo' posttranslational protein folding" evidence=TAS

GO:0044267 "cellular protein metabolic process" evidence=TAS

GO:0005515 "protein binding" evidence=IPI

GO:0005737 "cytoplasm" evidence=IDA

RGD|1309965 Tbcb "tubulin folding cofactor B" [Rattus norvegicus (taxid:10116)]

 Score = 344 (126.2 bits), Expect = 2.6e-31, P = 2.6e-31
 Identities = 90/219 (41%), Positives = 116/219 (52%)

Query:     2 SVESVKDKLWRKCGTSVNSMSLELYDDTNTKVAALTDNSRPLGFYSPLQGYRLHVIDLDP 61
             ++   K KL    G+  + M LELY   +   + L      LG Y    G R+HVID   
Sbjct:    33 TIAEFKCKLELVVGSPASCMELELYGADDQFYSKLDQEDALLGSYPVDDGCRIHVID--H 90

Query:    62 SSVTSGGWLEDTSLVEKYTISEEEYSKRDGTFRKF---------KEKVLSQNPSAVENKL 112
             S V  G + ED S VEKY IS E Y +R  T R F          E++ +Q  +    +L
Sbjct:    91 SGVRLGEY-EDVSKVEKYEISPEAYERRQNTVRSFMKRSKLGPYNEELRAQQEAEAAQRL 149

Query:   113 SNNYMEDLCSNITVGDRCEVD-PGAK--RGVVKYVGQAESIAPGFWVGIQYDEPLGKHNG 169
             S    E   S I+VG RCEV  PG    RG V YVG  +   PG+WVG++Y EPLGK++G
Sbjct:   150 SEE--EAQASAISVGSRCEVRAPGQSLHRGTVMYVGLTD-FKPGYWVGVRYGEPLGKNDG 206

Query:   170 IVKGVRYFECPPLHGAMVRPDKVKVGDYPERDPFEEDEI 208
              V G RYFEC   +GA V+P  V VGD+PE D +  DE+
Sbjct:   207 SVNGKRYFECQARYGAFVKPAAVTVGDFPEED-YGLDEM 244

GO:0005737 "cytoplasm" evidence=ISO

FB|FBgn0034451 TBCB "tubulin-binding cofactor B" [Drosophila melanogaster (taxid:7227)]

 Score = 277 (102.6 bits), Expect = 3.3e-24, P = 3.3e-24
 Identities = 71/218 (32%), Positives = 115/218 (52%)

Query:     1 MSVESVKDKLWRKCGTSVNSMSLELYDDTNTKVAALTDNSRPLGFYSPLQGYRLHVIDLD 60
             ++V  +K KL    G    +M ++++   +T V+ + +N   LG+Y+   G RLHV+D  
Sbjct:    62 LTVAQLKTKLEILTGGCAGTMKVQVFKG-DTCVSTMDNNDAQLGYYANSDGLRLHVVD-- 118

Query:    61 PSSVTSGGWLEDTSLVEKYTISEEEYSKRDGTFRKFKE-----KVLSQNPSAVENK--LS 113
              S  T   +  D++ VEK+ +S+++Y +R  + R + +     K   +     E K  L 
Sbjct:   119 -SFAT---FSFDSAPVEKFELSKDQYEQRTDSVRNYLKINRMGKYNDEEMQQAEEKKRLQ 174

Query:   114 NNYMEDLCSNITVGDRCEVD-PG--AKRGVVKYVGQAESIAPGFWVGIQYDEPLGKHNGI 170
                ++       +G RCEV  PG   +RG ++Y G  E  + G ++G++YDEPLGK+NG 
Sbjct:   175 AEEIQKRAELCVLGGRCEVTVPGNPTRRGTIRYNGPLEGKS-GHFIGVEYDEPLGKNNGS 233

Query:   171 VKGVRYFECPPLHGAMVRPDKVKVGDYPERDPFEEDEI 208
               G  YF C P +G  V P  V VGD+P  D   +DE+
Sbjct:   234 FGGKAYFTCAPNYGGFVSPLSVTVGDFPPEDFNMDDEL 271

GO:0005856 "cytoskeleton" evidence=ISS

GO:0005938 "cell cortex" evidence=IDA

GO:0035089 "establishment of apical/basal cell polarity" evidence=IMP

GO:0005634 "nucleus" evidence=IDA

GO:0007309 "oocyte axis specification" evidence=IMP

GO:0072686 "mitotic spindle" evidence=IDA

GO:0031122 "cytoplasmic microtubule organization" evidence=IMP

GO:0005737 "cytoplasm" evidence=IDA

GO:0005813 "centrosome" evidence=IDA

CGD|CAL0005089 orf19.2828 [Candida albicans (taxid:5476)]

 Score = 254 (94.5 bits), Expect = 9.0e-22, P = 9.0e-22
 Identities = 51/145 (35%), Positives = 89/145 (61%)

Query:    72 DTSLVEKYTISEEEYSKRDGTFRKFKE--KVLSQNPS--AVENKLSNNYMEDLCSNITVG 127
             D +   ++ +SEE+Y  R  +   +K+  K+   +P   +++ KL +   E     +++G
Sbjct:   125 DVAGFTEFQLSEEDYKTRQNSVLNWKKINKLGRFDPQFQSLQEKLHHE-TEMKLKTMSIG 183

Query:   128 DRCE---VDPGAKRGVVKYVGQAESIAPGF--WVGIQYDEPLGKHNGIVKGVRYFECPPL 182
              RC    ++   +RG+++++G+   +  G   WVGI++DEP+GK+NG + GV+ FEC P 
Sbjct:   184 SRCRLINIENNERRGIIRFIGKIMPLDNGENDWVGIEFDEPVGKNNGSIDGVKIFECKPN 243

Query:   183 HGAMVRPDKVKVGDYPERDPFEEDE 207
             HG+ VRP  V+VGD+PE DPF +D+
Sbjct:   244 HGSFVRPRLVEVGDFPELDPFADDD 268

GO:0005634 "nucleus" evidence=IEA

GO:0005829 "cytosol" evidence=IEA

GO:0043014 "alpha-tubulin binding" evidence=IEA

GO:0008017 "microtubule binding" evidence=IEA

GO:0007023 "post-chaperonin tubulin folding pathway" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q20728	TBCB_CAEEL	No assigned EC number	0.4390	0.9230	0.8384	yes	no
Q99426	TBCB_HUMAN	No assigned EC number	0.3944	0.9759	0.8319	yes	no
Q5E951	TBCB_BOVIN	No assigned EC number	0.4075	0.9471	0.8073	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	208
pfam01302	67	pfam01302, CAP_GLY, CAP-Gly domain	1e-30
smart01052	68	smart01052, CAP_GLY, Cytoskeleton-associated prote	3e-28
cd01789	84	cd01789, Alp11_N, Ubiquitin-like domain of Alp11 t	5e-23
COG5244	669	COG5244, NIP100, Dynactin complex subunit involved	8e-13

>gnl|CDD|216424 pfam01302, CAP_GLY, CAP-Gly domain

 Score =  106 bits (268), Expect = 1e-30
 Identities = 41/68 (60%), Positives = 49/68 (72%), Gaps = 1/68 (1%)

Query: 126 VGDRCEVDPGAKRGVVKYVGQAESIAPGFWVGIQYDEPLGKHNGIVKGVRYFECPPLHGA 185
           VGDR EV  G +RG V+YVG     APG WVG++ DEP GK++G V GVRYFECPP +G 
Sbjct: 1   VGDRVEVLGGGRRGTVRYVGPVP-FAPGLWVGVELDEPRGKNDGSVDGVRYFECPPKYGI 59

Query: 186 MVRPDKVK 193
            VRP KV+
Sbjct: 60  FVRPSKVE 67

Cytoskeleton-associated proteins (CAPs) are involved in the organisation of microtubules and transportation of vesicles and organelles along the cytoskeletal network. A conserved motif, CAP-Gly, has been identified in a number of CAPs, including CLIP-170 and dynactins. The crystal structure of Caenorhabditis elegans F53F4.3 protein CAP-Gly domain was recently solved. The domain contains three beta-strands. The most conserved sequence, GKNDG, is located in two consecutive sharp turns on the surface, forming the entrance to a groove. Length = 67

>gnl|CDD|214997 smart01052, CAP_GLY, Cytoskeleton-associated proteins (CAPs) are involved in the organisation of microtubules and transportation of vesicles and organelles along the cytoskeletal network

 Score =  100 bits (252), Expect = 3e-28
 Identities = 44/69 (63%), Positives = 51/69 (73%), Gaps = 2/69 (2%)

Query: 126 VGDRCEVDPGAKRGVVKYVGQAESIAPGFWVGIQYDEPL-GKHNGIVKGVRYFECPPLHG 184
           VGDR EV  G +RG V+YVG     APG WVG++ DEPL GK++G VKGVRYFECPP HG
Sbjct: 1   VGDRVEVGGGGRRGTVRYVGPTPF-APGVWVGVELDEPLRGKNDGSVKGVRYFECPPKHG 59

Query: 185 AMVRPDKVK 193
             VRP KV+
Sbjct: 60  IFVRPSKVE 68

A conserved motif, CAP-Gly, has been identified in a number of CAPs, including CLIP-170 and dynactins. The crystal structure of Caenorhabditis elegans F53F4.3 protein CAP-Gly domain was recently solved. The domain contains three beta-strands. The most conserved sequence, GKNDG, is located in two consecutive sharp turns on the surface, forming the entrance to a groove. Length = 68

>gnl|CDD|176384 cd01789, Alp11_N, Ubiquitin-like domain of Alp11 tubulin-folding cofactor B

 Score = 87.8 bits (218), Expect = 5e-23
 Identities = 22/62 (35%), Positives = 35/62 (56%)

Query: 1  MSVESVKDKLWRKCGTSVNSMSLELYDDTNTKVAALTDNSRPLGFYSPLQGYRLHVIDLD 60
          +++  +K KL    GT  +SM L+L+D  +  V+ L D+   LG Y    G R+HVID+ 
Sbjct: 23 LTIAELKKKLELVVGTPASSMRLQLFDGDDKLVSKLDDDDALLGSYPVDDGCRIHVIDVS 82

Query: 61 PS 62
           +
Sbjct: 83 GT 84

Alp11, also known as tubulin-folding cofactor B, is one of at least three proteins required for the proper folding of tubulins prior to their incorporation into microtubules. These cofactors are necessary for the biogenesis of microtubules and for cell viability. Alp11 has three domains including an N-terminal ubiquitin-like domain (represented by this CD) which executes the essential function, a central coiled-coil domain necessary for maintenance of cellular alpha-tubulin levels, and a C-terminal CLIP-170 domain is required for efficient binding to alpha-tubulin. Length = 84

>gnl|CDD|227569 COG5244, NIP100, Dynactin complex subunit involved in mitotic spindle partitioning in anaphase B [Cell division and chromosome partitioning]

 Score = 66.2 bits (161), Expect = 8e-13
 Identities = 29/77 (37%), Positives = 47/77 (61%), Gaps = 3/77 (3%)

Query: 122 SNITVGDRCEVDPGAKRGVVKYVGQAESIAPGFWVGIQYDEPLGKHNGIVKGVRYFECPP 181
           S ++V DR  +  G K G V+++G+ +    G W+G++ D+P+GK++G V GVRYF C  
Sbjct: 2   SLLSVNDRVLL--GDKFGTVRFIGKTKF-KDGIWIGLELDDPVGKNDGSVNGVRYFHCKK 58

Query: 182 LHGAMVRPDKVKVGDYP 198
            HG  +RPD   + +  
Sbjct: 59  RHGIFIRPDDDSLLNGN 75

Length = 669

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	208
KOG3206	234	consensus Alpha-tubulin folding cofactor B [Posttr	100.0
PF01302	69	CAP_GLY: CAP-Gly domain; InterPro: IPR000938 Cytos	99.94
KOG0971	1243	consensus Microtubule-associated protein dynactin	99.82
COG5244	669	NIP100 Dynactin complex subunit involved in mitoti	99.79
PF14560	87	Ubiquitin_2: Ubiquitin-like domain; PDB: 1WJN_A 2K	99.76
cd01789	84	Alp11_N Ubiquitin-like domain of Alp11 tubulin-fol	99.75
KOG3207	505	consensus Beta-tubulin folding cofactor E [Posttra	99.65
KOG4568	664	consensus Cytoskeleton-associated protein and rela	99.62
KOG4568	664	consensus Cytoskeleton-associated protein and rela	99.19
KOG3556	724	consensus Familial cylindromatosis protein [Genera	99.16
KOG0241	1714	consensus Kinesin-like protein [Cytoskeleton]	99.08
cd01800	76	SF3a120_C Ubiquitin-like domain of Mammalian splic	98.9
cd01799	75	Hoil1_N Ubiquitin-like domain of HOIL1. HOIL1_N HO	98.87
cd01806	76	Nedd8 Nebb8-like ubiquitin protein. Nedd8 (also kn	98.85
PTZ00044	76	ubiquitin; Provisional	98.84
cd01809	72	Scythe_N Ubiquitin-like domain of Scythe protein.	98.83
cd01795	107	USP48_C USP ubiquitin-specific protease. The USP (	98.81
cd01793	74	Fubi Fubi ubiquitin-like protein. Fubi is a ubiqui	98.8
cd01812	71	BAG1_N Ubiquitin-like domain of BAG1. BAG1_N N-ter	98.76
cd01803	76	Ubiquitin Ubiquitin. Ubiquitin (includes Ubq/RPL40	98.75
cd01796	71	DDI1_N DNA damage inducible protein 1 ubiquitin-li	98.71
cd01807	74	GDX_N ubiquitin-like domain of GDX. GDX contains a	98.7
cd01797	78	NIRF_N amino-terminal ubiquitin-like domain of Np9	98.69
cd01794	70	DC_UbP_C dendritic cell derived ubiquitin-like pro	98.67
PF00240	69	ubiquitin: Ubiquitin family; InterPro: IPR000626 U	98.67
cd01798	70	parkin_N amino-terminal ubiquitin-like of parkin p	98.66
cd01815	75	BMSC_UbP_N Ubiquitin-like domain of BMSC-UbP. BMSC	98.62
cd01791	73	Ubl5 UBL5 ubiquitin-like modifier. UBL5 (also know	98.62
cd01810	74	ISG15_repeat2 ISG15 ubiquitin-like protein, second	98.56
cd01808	71	hPLIC_N Ubiquitin-like domain of hPLIC-1 and hPLIC	98.53
cd01802	103	AN1_N ubiquitin-like domain of AN1. AN1 (also know	98.53
cd01813	74	UBP_N UBP ubiquitin processing protease. The UBP (	98.51
cd01804	78	midnolin_N Ubiquitin-like domain of midnolin. midn	98.44
cd01769	69	UBL Ubiquitin-like domain of UBL. UBLs function by	98.41
cd01805	77	RAD23_N Ubiquitin-like domain of RAD23. RAD23 belo	98.39
cd01792	80	ISG15_repeat1 ISG15 ubiquitin-like protein, first	98.39
KOG0005	70	consensus Ubiquitin-like protein [Cell cycle contr	98.32
smart00213	64	UBQ Ubiquitin homologues. Ubiquitin-mediated prote	98.08
KOG0004	156	consensus Ubiquitin/40S ribosomal protein S27a fus	98.07
cd01790	79	Herp_N Homocysteine-responsive endoplasmic reticul	98.06
cd01814	113	NTGP5 Ubiquitin-like NTGP5 and ATGP4. NTGP5 and AT	97.89
PLN02560	308	enoyl-CoA reductase	97.89
cd01763	87	Sumo Small ubiquitin-related modifier (SUMO). Smal	97.88
KOG0003	128	consensus Ubiquitin/60s ribosomal protein L40 fusi	97.85
cd01801	77	Tsc13_N Ubiquitin-like domain of Tsc13. Tsc13_N N-	97.5
TIGR00601	378	rad23 UV excision repair protein Rad23. All protei	97.4
KOG0010	493	consensus Ubiquitin-like protein [Posttranslationa	97.11
PF11976	72	Rad60-SLD: Ubiquitin-2 like Rad60 SUMO-like; Inter	97.1
cd01788	119	ElonginB Ubiquitin-like domain of Elongin B. Elong	96.69
cd01811	80	OASL_repeat1 2'-5' oligoadenylate synthetase-like	96.67
cd00196	69	UBQ Ubiquitin-like proteins. Ubiquitin homologs; I	96.64
KOG0001	75	consensus Ubiquitin and ubiquitin-like proteins [P	96.46
PF11543	80	UN_NPL4: Nuclear pore localisation protein NPL4; I	95.96
KOG4248	1143	consensus Ubiquitin-like protein, regulator of apo	95.76
KOG2982	418	consensus Uncharacterized conserved protein [Funct	95.7
KOG0011	340	consensus Nucleotide excision repair factor NEF2,	94.98
KOG1872	473	consensus Ubiquitin-specific protease [Posttransla	94.31
PTZ00243	1560	ABC transporter; Provisional	93.89
KOG4495	110	consensus RNA polymerase II transcription elongati	93.29
PRK10708	62	hypothetical protein; Provisional	93.22
PF10781	62	DSRB: Dextransucrase DSRB; InterPro: IPR019717 DSR	93.2
PF13881	111	Rad60-SLD_2: Ubiquitin-2 like Rad60 SUMO-like; PDB	92.5
KOG3493	73	consensus Ubiquitin-like protein [Posttranslationa	87.24
PF14732	87	UAE_UbL: Ubiquitin/SUMO-activating enzyme ubiquiti	85.23
PF14836	88	Ubiquitin_3: Ubiquitin-like domain; PDB: 3JYU_A 4A	80.8

>KOG3206 consensus Alpha-tubulin folding cofactor B [Posttranslational modification, protein turnover, chaperones]

Probab=100.00  E-value=2e-66  Score=431.86  Aligned_cols=203  Identities=48%  Similarity=0.854  Sum_probs=180.8

Q ss_pred             CCHHHHHHhcccccccCCCCeEEEEEcCCCCeeeecCCCCCcCCCCCCCCCcEEEEecCCCCCccCCCcccCCCcceeee
Q 028484            1 MSVESVKDKLWRKCGTSVNSMSLELYDDTNTKVAALTDNSRPLGFYSPLQGYRLHVIDLDPSSVTSGGWLEDTSLVEKYT   80 (208)
Q Consensus         1 ~TI~~LK~KLe~itGi~p~~m~L~l~~~~g~~~~~l~dd~~~L~~y~i~~g~~IhV~D~~p~s~~~~~~l~D~s~vek~~   80 (208)
                      |||.+||.|||.+||++|++|+|+|++.+++.+..|+++++.|++|++.||.+|||+|.++.|+++   ++|.|.||||+
T Consensus        23 ltl~q~K~KLe~~~G~~~~~M~l~l~~~~d~~~~~lsn~d~~lg~~~~~Dg~rihviD~~~~~~~~---~~d~s~veky~   99 (234)
T KOG3206|consen   23 LTLAQFKDKLELLTGTEAESMELELYDGDDKKVSALSNEDADLGFYKVEDGLRIHVIDSNAQSISN---TEDESIVEKYE   99 (234)
T ss_pred             CcHHHHHhhhhhhhCCCccceEEEEEcCCCceeeeccCCcccccccCCCCceEEEEEecCcccccc---ccccccceeee
Confidence            699999999999999999999999999999999999999999999999999999999999988754   89999999999


Q ss_pred             cCHHHHhcchhhHHHHHHHhhc--CCCchhhh----ccccchhhhhcCCCCcCCEEEEc-CC--CceeEEEEecccCCCC
Q 028484           81 ISEEEYSKRDGTFRKFKEKVLS--QNPSAVEN----KLSNNYMEDLCSNITVGDRCEVD-PG--AKRGVVKYVGQAESIA  151 (208)
Q Consensus        81 ls~e~Y~~r~dtv~~~k~~~~~--~~p~~~~~----~~~~~~~~~~~~~~~vG~rv~v~-~~--~~~G~vryvG~~~~~~  151 (208)
                      ||+|+|.+|+||||+||++++.  ||.+...+    +++...++.....+.||.||+|. ++  .+||+|||+|++++ +
T Consensus       100 iSee~Y~qRtdSvr~~kk~~~~gryn~~~~~q~ea~~~~~~~e~~~~~~i~vG~rCeVtv~G~~~Rrg~vrYvG~~~~-k  178 (234)
T KOG3206|consen  100 ISEEDYLQRTDSVRRFKKKHGYGRYNAEEQAQAEAEAKQDLAEERAQATIAVGRRCEVTVPGQAPRRGTVRYVGPLEF-K  178 (234)
T ss_pred             cCHHHHhhhhHHHHHHHHHhcccccchhhhhHHHHHhHHHHHHHHHhhccccCCeeEEecCCCCCcceEEEEecccCC-C
Confidence            9999999999999999999974  55442221    11112222223349999999997 55  59999999999998 9


Q ss_pred             CCcEEEEEEeCCCCCCCcEECCEEeeecCCCceeeecCCCCccCCCCCCCCCCCCCC
Q 028484          152 PGFWVGIQYDEPLGKHNGIVKGVRYFECPPLHGAMVRPDKVKVGDYPERDPFEEDEI  208 (208)
Q Consensus       152 ~g~wvGVelde~~GkndGs~~G~rYF~c~~~~G~Fv~~~~v~~g~fp~~d~~~~dE~  208 (208)
                      +|+||||++|||.|||||+++|+|||.|+|+||.||||..|++|||||+| |++|||
T Consensus       179 ~G~wiGVeydEplGKnDGsv~G~ryF~c~p~yGgfVrP~~V~VgdfpeeD-~~~DEi  234 (234)
T KOG3206|consen  179 PGYWIGVEYDEPLGKNDGSVNGKRYFECAPKYGGFVRPRAVTVGDFPEED-FSDDEI  234 (234)
T ss_pred             CceEEEEecCCccccCCCcccceEeeecCCccCCccccceeeecCCChhh-cccccC
Confidence            99999999999999999999999999999999999999999999999988 888887

>PF01302 CAP_GLY: CAP-Gly domain; InterPro: IPR000938 Cytoskeleton-associated proteins (CAP) are made of three distinct parts, an N-terminal section that is most probably globular and contains the CAP-Gly domain, a large central region predicted to be in an alpha-helical coiled-coil conformation and, finally, a short C-terminal globular domain

Probab=99.94  E-value=2.6e-27  Score=168.28  Aligned_cols=68  Identities=59%  Similarity=1.205  Sum_probs=60.2

Q ss_pred             cCCEEEEc-CCCceeEEEEecccCCCCCCcEEEEEEeCCCCCCCcEECCEEeeecCCCceeeecCCCCc
Q 028484          126 VGDRCEVD-PGAKRGVVKYVGQAESIAPGFWVGIQYDEPLGKHNGIVKGVRYFECPPLHGAMVRPDKVK  193 (208)
Q Consensus       126 vG~rv~v~-~~~~~G~vryvG~~~~~~~g~wvGVelde~~GkndGs~~G~rYF~c~~~~G~Fv~~~~v~  193 (208)
                      ||+||.|. +..++|+|||+|+++..++|.|+|||||+|.|+|||+++|+|||+|+|+||+||++++|+
T Consensus         1 VG~rV~v~~~~~~~G~vryiG~~~~~~~g~~vGVEld~~~G~~dGt~~G~rYF~c~~~~G~Fv~~~~v~   69 (69)
T PF01302_consen    1 VGDRVRVDDPGGRRGTVRYIGPVPGFKSGIWVGVELDEPRGKNDGTVKGKRYFECPPNHGIFVRPSKVE   69 (69)
T ss_dssp             TTSEEEESSTTTEEEEEEEEEE-SSSSSSEEEEEEESSSTSSBSSEETTEESS-SSTTTEEEEEGGGE-
T ss_pred             CCCEEEEeeCCCCEEEEEEEeeCCCCCCCEEEEEEEcCCCCCCCcEECCEEEeeeCCCCEEEecHHHCC
Confidence            79999993 348999999999999437899999999999999999999999999999999999999885

The CAP-Gly domain is a conserved, glycine-rich domain of about 42 residues found in some CAPs []. Proteins known to contain this domain include restin (also known as cytoplasmic linker protein-170 or CLIP-170), a 160 kDa protein associated with intermediate filaments and that links endocytic vesicles to microtubules; vertebrate dynactin (150 kDa dynein-associated polypeptide; DAP) and Drosophila glued, a major component of activator I; yeast protein BIK1, which seems to be required for the formation or stabilisation of microtubules during mitosis and for spindle pole body fusion during conjugation; yeast protein NIP100 (NIP80); human protein CKAP1/TFCB; Schizosaccharomyces pombe protein alp11 and Caenorhabditis elegans hypothetical protein F53F4.3. The latter proteins contain a N-terminal ubiquitin domain and a C-terminal CAP-Gly domain. The crystal structure of the CAP-Gly domain of C. elegans F53F4.3 protein, solved by single wavelength sulphur-anomalous phasing, revealed a novel protein fold containing three beta-sheets. The most conserved sequence, GKNDG, is located in two consecutive sharp turns on the surface, forming the entrance to a groove. Residues in the groove are highly conserved as measured from the information content of the aligned sequences. The C-terminal tail of another molecule in the crystal is bound in this groove []. ; PDB: 2CP6_A 2E4H_A 2E3H_A 3E2U_B 2HL3_B 3TQ7_Q 2HKQ_B 2HQH_A 2HKN_B 2HL5_C ....

>KOG0971 consensus Microtubule-associated protein dynactin DCTN1/Glued [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]

Probab=99.82  E-value=1.2e-20  Score=182.86  Aligned_cols=74  Identities=46%  Similarity=0.785  Sum_probs=69.4

Q ss_pred             hcCCCCcCCEEEEcCCCceeEEEEecccCCCCCCcEEEEEEeCCCCCCCcEECCEEeeecCCCceeeecCCCCcc
Q 028484          120 LCSNITVGDRCEVDPGAKRGVVKYVGQAESIAPGFWVGIQYDEPLGKHNGIVKGVRYFECPPLHGAMVRPDKVKV  194 (208)
Q Consensus       120 ~~~~~~vG~rv~v~~~~~~G~vryvG~~~~~~~g~wvGVelde~~GkndGs~~G~rYF~c~~~~G~Fv~~~~v~~  194 (208)
                      ++..|+||.||+|..+...|+|.|||.+.| ..|.||||-||+|.|||||||+|++||+|++|||+|||++.|.+
T Consensus         2 s~r~lkvG~RVevtgknl~G~VayvG~T~F-A~G~WvGVvLDep~GKNnGsVqg~qYF~Cd~ncG~FVr~sq~r~   75 (1243)
T KOG0971|consen    2 SPRSLKVGTRVEVTGKNLQGTVAYVGQTQF-AEGKWVGVVLDEPKGKNNGSVQGVQYFECDENCGVFVRSSQVRE   75 (1243)
T ss_pred             CCccccccceEEeccCCccceEEEeccccc-ccCceEEEEeccccCCCCCcccceeeEecCCCcceEeehhhhHH
Confidence            356799999999986678999999999999 99999999999999999999999999999999999999999665

>COG5244 NIP100 Dynactin complex subunit involved in mitotic spindle partitioning in anaphase B [Cell division and chromosome partitioning]

Probab=99.79  E-value=8.7e-20  Score=167.92  Aligned_cols=68  Identities=40%  Similarity=0.903  Sum_probs=63.4

Q ss_pred             CCCcCCEEEEcCCCceeEEEEecccCCCCCCcEEEEEEeCCCCCCCcEECCEEeeecCCCceeeecCCCCc
Q 028484          123 NITVGDRCEVDPGAKRGVVKYVGQAESIAPGFWVGIQYDEPLGKHNGIVKGVRYFECPPLHGAMVRPDKVK  193 (208)
Q Consensus       123 ~~~vG~rv~v~~~~~~G~vryvG~~~~~~~g~wvGVelde~~GkndGs~~G~rYF~c~~~~G~Fv~~~~v~  193 (208)
                      -+.|||||.|.  +..|+|||+|.+.+ +.|+|+|||||.|.||||||++|+|||.|...||+|+||..=.
T Consensus         3 ~lSv~D~Vll~--~~~g~VrfiG~t~f-~~GiW~GlELd~p~GkNDGSvnGvRYF~Ckk~~giFir~~~~~   70 (669)
T COG5244           3 LLSVNDRVLLG--DKFGTVRFIGKTKF-KDGIWIGLELDDPVGKNDGSVNGVRYFHCKKRHGIFIRPDDDS   70 (669)
T ss_pred             eeecCCEEEec--cccceEEEeeeccc-ccceEEEEEecCCCCCCCCccCceEEEEecCCcceEEecCchh
Confidence            46899999996  78999999999999 9999999999999999999999999999999999999976543

>PF14560 Ubiquitin_2: Ubiquitin-like domain; PDB: 1WJN_A 2KJ6_A 2KJR_A 1V6E_A 1T0Y_A

Probab=99.76  E-value=3.9e-19  Score=130.80  Aligned_cols=63  Identities=37%  Similarity=0.618  Sum_probs=54.0

Q ss_pred             CCHHHHHHhcccccccCCCCeEEEEE-cCCCCeeeecCCCCCcCCCCCCCCCcEEEEecCCCCC
Q 028484            1 MSVESVKDKLWRKCGTSVNSMSLELY-DDTNTKVAALTDNSRPLGFYSPLQGYRLHVIDLDPSS   63 (208)
Q Consensus         1 ~TI~~LK~KLe~itGi~p~~m~L~l~-~~~g~~~~~l~dd~~~L~~y~i~~g~~IhV~D~~p~s   63 (208)
                      +||++||+|||.+||+||++|+|.++ +.++..+..+++|.++|++|++++|++|||+|+||+|
T Consensus        24 ~Tv~eLK~kl~~~~Gi~~~~m~L~l~~~~~~~~~~~~~dd~~~L~~y~~~dg~~i~V~D~~p~s   87 (87)
T PF14560_consen   24 ITVSELKQKLEKLTGIPPSDMRLQLKSDKDDSKIEELDDDDATLGSYGIKDGMRIHVVDTNPSS   87 (87)
T ss_dssp             SBHHHHHHHHHHHHTS-TTTEEEEEE-TSSSSEEEESSGSSSBCCHHT-STTEEEEEEE-T---
T ss_pred             CCHHHHHHHHHHHhCCCcccEEEEEEecCCCccccccCCCccEeecCCCCCCCEEEEEeCCCCC
Confidence            69999999999999999999999999 5677888889999999999999999999999999986

>cd01789 Alp11_N Ubiquitin-like domain of Alp11 tubulin-folding cofactor B

Probab=99.75  E-value=1.5e-18  Score=127.42  Aligned_cols=62  Identities=35%  Similarity=0.572  Sum_probs=58.3

Q ss_pred             CCHHHHHHhcccccccCCCCeEEEEEcCCCCeeeecCCCCCcCCCCCCCCCcEEEEecCCCC
Q 028484            1 MSVESVKDKLWRKCGTSVNSMSLELYDDTNTKVAALTDNSRPLGFYSPLQGYRLHVIDLDPS   62 (208)
Q Consensus         1 ~TI~~LK~KLe~itGi~p~~m~L~l~~~~g~~~~~l~dd~~~L~~y~i~~g~~IhV~D~~p~   62 (208)
                      |||++||+||+.+||+||++|+|++++..+..++.|++|.++|++|++++|++|||+|++|.
T Consensus        23 ~Tv~~lK~kl~~~~G~~~~~mrL~l~~~~~~~~~~l~~d~~~L~~y~~~dg~~IhVvD~~p~   84 (84)
T cd01789          23 LTIAELKKKLELVVGTPASSMRLQLFDGDDKLVSKLDDDDALLGSYPVDDGCRIHVIDVSGT   84 (84)
T ss_pred             CcHHHHHHHHHHHHCCCccceEEEEEcCCCCeEeecCCCccEeeeccCCCCCEEEEEeCCCC
Confidence            69999999999999999999999999887777777999999999999999999999999984

Alp11, also known as tubulin-folding cofactor B, is one of at least three proteins required for the proper folding of tubulins prior to their incorporation into microtubules. These cofactors are necessary for the biogenesis of microtubules and for cell viability. Alp11 has three domains including an N-terminal ubiquitin-like domain (represented by this CD) which executes the essential function, a central coiled-coil domain necessary for maintenance of cellular alpha-tubulin levels, and a C-terminal CLIP-170 domain is required for efficient binding to alpha-tubulin.

>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]

Probab=99.65  E-value=1.5e-16  Score=146.28  Aligned_cols=70  Identities=37%  Similarity=0.873  Sum_probs=65.1

Q ss_pred             CCCcCCEEEEcCCCceeEEEEecccCCCCCCcEEEEEEeCCC-CCCCcEECCEEeeec-CCCceeeecCCCCccC
Q 028484          123 NITVGDRCEVDPGAKRGVVKYVGQAESIAPGFWVGIQYDEPL-GKHNGIVKGVRYFEC-PPLHGAMVRPDKVKVG  195 (208)
Q Consensus       123 ~~~vG~rv~v~~~~~~G~vryvG~~~~~~~g~wvGVelde~~-GkndGs~~G~rYF~c-~~~~G~Fv~~~~v~~g  195 (208)
                      .+.+|+||.|.  +..+||||+|.|++ -++.|+|||||+|. |||||+++|+|||.| .|+.|+|++|.+|..+
T Consensus         2 ~~~IG~RvkI~--~~~~Tvr~iG~V~g-~~~~w~GvEWDd~~RGKH~G~vdgk~YF~~q~P~GGSFik~~kV~~p   73 (505)
T KOG3207|consen    2 TMEIGTRVKIG--GEIATVRYIGEVEG-NNSKWYGVEWDDPVRGKHDGIVDGKRYFQTQHPNGGSFIKPGKVKFP   73 (505)
T ss_pred             ceeccceEEEc--CEEEEEEEEEEEcC-CCCcceeeEecCCCccccCceecceeeeeeecCCCccccCCccCCCC
Confidence            46899999996  89999999999999 56799999999996 999999999999999 7999999999999875

>KOG4568 consensus Cytoskeleton-associated protein and related proteins [Cytoskeleton; General function prediction only]

Probab=99.62  E-value=2.1e-16  Score=152.64  Aligned_cols=74  Identities=35%  Similarity=0.731  Sum_probs=68.4

Q ss_pred             hhcCCCCcCCEEEEcCCCceeEEEEecccCCCCCCcEEEEEEeCCCCCCCcEECCEEeeecCCCceeeecCCCCcc
Q 028484          119 DLCSNITVGDRCEVDPGAKRGVVKYVGQAESIAPGFWVGIQYDEPLGKHNGIVKGVRYFECPPLHGAMVRPDKVKV  194 (208)
Q Consensus       119 ~~~~~~~vG~rv~v~~~~~~G~vryvG~~~~~~~g~wvGVelde~~GkndGs~~G~rYF~c~~~~G~Fv~~~~v~~  194 (208)
                      .....+.+|++|.|. +..+|.|||+|++.+ ..|+|+||+|++|.|||||+|.|+|||.|.+++|+|+++.+...
T Consensus        13 ~~~~~~~ig~~v~v~-~~~~G~v~y~G~t~f-~~G~w~GveL~~p~GKNdGsv~G~rYF~ce~~kgif~~~~~~t~   86 (664)
T KOG4568|consen   13 DDLGQFIIGRRVWVN-NVELGFVRYAGETDF-AKGIWAGVELLEPKGKNDGSVHGKRYFQCEPKKGIFFRQGRGTA   86 (664)
T ss_pred             hhhhhhhhcceEEec-CCcceeeeeccCccc-ccceeeceeeccccCCCCcccchhhhhccccccceeeccccccc
Confidence            445678999999997 689999999999999 99999999999999999999999999999999999999887654

>KOG4568 consensus Cytoskeleton-associated protein and related proteins [Cytoskeleton; General function prediction only]

Probab=99.19  E-value=3.8e-12  Score=123.30  Aligned_cols=77  Identities=39%  Similarity=0.719  Sum_probs=71.6

Q ss_pred             cCCCCcCCEEEEcCCCceeEEEEecccCCCCCCcEEEEEEeCCCCCCCcEECCEEeeecCCCceeeecCCCCccCCCCC
Q 028484          121 CSNITVGDRCEVDPGAKRGVVKYVGQAESIAPGFWVGIQYDEPLGKHNGIVKGVRYFECPPLHGAMVRPDKVKVGDYPE  199 (208)
Q Consensus       121 ~~~~~vG~rv~v~~~~~~G~vryvG~~~~~~~g~wvGVelde~~GkndGs~~G~rYF~c~~~~G~Fv~~~~v~~g~fp~  199 (208)
                      ...+.+|+|+.+. +...|++||.|.+.+ +.|-|+|||||+|.|+|||++.+++||+|+|.||.|.+..+|..+.++.
T Consensus       152 ~~~l~v~dr~l~~-gq~~~~~r~~~~t~f-a~g~w~~~elde~~~~~d~sv~k~~~~~~k~ky~~f~~v~kv~~~~~~~  228 (664)
T KOG4568|consen  152 MLGLRVGDRVLVG-GQKSGTLRYSGHTKF-ASGSWLGVELDEPVGKNDGSVGKVRYFQCKPKYGKFAPVQKVFKIEVTI  228 (664)
T ss_pred             ccccccccceeec-Ccccchhhhhccccc-cCCcccchhcccccccccccccccccccCcchhcchhHHHHHhhccccc
Confidence            4568999999997 789999999999999 9999999999999999999999999999999999999999998876653

>KOG3556 consensus Familial cylindromatosis protein [General function prediction only]

Probab=99.16  E-value=5.3e-11  Score=111.41  Aligned_cols=79  Identities=24%  Similarity=0.521  Sum_probs=70.8

Q ss_pred             CCCCcCCEEEEc-CC---CceeEEEEecccCCCCCCcEEEEEEeCCC-----CCCCcEECCEEeeecCCCceeeecCCCC
Q 028484          122 SNITVGDRCEVD-PG---AKRGVVKYVGQAESIAPGFWVGIQYDEPL-----GKHNGIVKGVRYFECPPLHGAMVRPDKV  192 (208)
Q Consensus       122 ~~~~vG~rv~v~-~~---~~~G~vryvG~~~~~~~g~wvGVelde~~-----GkndGs~~G~rYF~c~~~~G~Fv~~~~v  192 (208)
                      ..|+||+.|+|. ++   ..+|+|||||..|. ..|+|+|||+++..     +..||++.|.|||+|..+..+||+...+
T Consensus       234 ~~L~IGslveV~np~~~~~~ygvVrWIG~pP~-~~~Vl~gve~edet~~~~~~~~dgs~~g~Rlftc~d~~a~Fv~~~sc  312 (724)
T KOG3556|consen  234 LNLKIGSLVEVENPETMRRVYGVVRWIGEPPE-ASGVLYGVEFEDETSQWPSSNQDGSSSGDRLFTCFDTNANFVMSGSC  312 (724)
T ss_pred             ccceecceEEecCCccccccceeeEecccCCc-ccCceEeeeecCccccCccccccCcccCceeeeeccccceeeEcCCC
Confidence            458999999996 32   57999999999998 89999999999753     7899999999999999999999999999


Q ss_pred             ccC-CCCCCC
Q 028484          193 KVG-DYPERD  201 (208)
Q Consensus       193 ~~g-~fp~~d  201 (208)
                      .+. .|..++
T Consensus       313 s~d~rfa~l~  322 (724)
T KOG3556|consen  313 SVDPRFARLY  322 (724)
T ss_pred             CcCcccchhc
Confidence            998 688766

>KOG0241 consensus Kinesin-like protein [Cytoskeleton]

Probab=99.08  E-value=6.4e-11  Score=116.75  Aligned_cols=71  Identities=28%  Similarity=0.413  Sum_probs=62.7

Q ss_pred             hhhcCCCCcCCEEEEcCCCceeEEEEecccCCCCCCcEEEEEEeCCCCCCCcEECCEEeeecCCCceeeecCCCCcc
Q 028484          118 EDLCSNITVGDRCEVDPGAKRGVVKYVGQAESIAPGFWVGIQYDEPLGKHNGIVKGVRYFECPPLHGAMVRPDKVKV  194 (208)
Q Consensus       118 ~~~~~~~~vG~rv~v~~~~~~G~vryvG~~~~~~~g~wvGVelde~~GkndGs~~G~rYF~c~~~~G~Fv~~~~v~~  194 (208)
                      ......+-+|.||.+. ....++|||+|++.| -+    |||||.|.|||||++.|++||+|.|+||+||+++++..
T Consensus      1625 ~~~pew~~~ge~v~~~-~h~t~v~r~vg~tef-q~----gveld~p~gkndgs~gg~qyfrc~p~~g~~vr~s~~~~ 1695 (1714)
T KOG0241|consen 1625 KISPEWRGFGERVVTV-EHTTNVLRDVGFTEF-QG----GVELDDPDGKNDGSAGGLQYFRCLPNKGGGVRVSDGLH 1695 (1714)
T ss_pred             hcCchhhhcCceeEEe-ecccceeeecchhhc-cC----cccccCCCCCcCccccceeEEeecCCCCCcccchhhcc
Confidence            3455678899999986 367889999999998 33    99999999999999999999999999999999998764

>cd01800 SF3a120_C Ubiquitin-like domain of Mammalian splicing factor SF3a_120

Probab=98.90  E-value=7.3e-10  Score=79.41  Aligned_cols=51  Identities=20%  Similarity=0.295  Sum_probs=45.1

Q ss_pred             CCHHHHHHhcccccccCCCCeEEEEEcCCCCeeeecCCCCCcCCCCCCCCCcEEEEec
Q 028484            1 MSVESVKDKLWRKCGTSVNSMSLELYDDTNTKVAALTDNSRPLGFYSPLQGYRLHVID   58 (208)
Q Consensus         1 ~TI~~LK~KLe~itGi~p~~m~L~l~~~~g~~~~~l~dd~~~L~~y~i~~g~~IhV~D   58 (208)
                      +||++||++|+..+||||+.|+|.+.   |+.   | +|+++|++|++++|++|||.=
T Consensus        18 ~TV~~lK~~i~~~~gip~~~q~L~~~---G~~---L-~d~~tL~~~~i~~g~~l~v~~   68 (76)
T cd01800          18 DPVSVLKVKIHEETGMPAGKQKLQYE---GIF---I-KDSNSLAYYNLANGTIIHLQL   68 (76)
T ss_pred             CcHHHHHHHHHHHHCCCHHHEEEEEC---CEE---c-CCCCcHHHcCCCCCCEEEEEE
Confidence            58999999999999999999999984   543   3 567899999999999999974

SF3a120_C Mammalian splicing factor SF3a consists of three subunits of 60, 66, and 120 kDa and functions early during pre-mRNA splicing by converting the U2 snRNP to its active form. The 120kDa subunit (SF3a120) has a carboxy-terminal ubiquitin-like domain and two SWAP (suppressor-of-white-apricot) domains, referred to collectively as the SURP module, at its amino-terminus.

>cd01799 Hoil1_N Ubiquitin-like domain of HOIL1

Probab=98.87  E-value=1.3e-09  Score=78.43  Aligned_cols=50  Identities=18%  Similarity=0.212  Sum_probs=43.9

Q ss_pred             CCHHHHHHhcccccccCCCCeEEEEEcCCCCeeeecCCCCCcCCCCCCC-CCcEEEEe
Q 028484            1 MSVESVKDKLWRKCGTSVNSMSLELYDDTNTKVAALTDNSRPLGFYSPL-QGYRLHVI   57 (208)
Q Consensus         1 ~TI~~LK~KLe~itGi~p~~m~L~l~~~~g~~~~~l~dd~~~L~~y~i~-~g~~IhV~   57 (208)
                      +||++||.||+..+||||++|+| +   .|+.   |.+|.++|++|+++ +|.++|+-
T Consensus        23 ~TV~~lK~kI~~~~gip~~~QrL-~---~G~~---L~dD~~tL~~ygi~~~g~~~~l~   73 (75)
T cd01799          23 MTVAQLKDKVFLDYGFPPAVQRW-V---IGQR---LARDQETLYSHGIRTNGDSAFLY   73 (75)
T ss_pred             CcHHHHHHHHHHHHCcCHHHEEE-E---cCCe---eCCCcCCHHHcCCCCCCCEEEEE
Confidence            59999999999999999999999 5   3655   55788999999999 88999873

HOIL1_N HOIL-1 (heme-oxidized IRP2 ubiquitin ligase-1) is an E3 ubiquitin-protein ligase that recognizes heme-oxidized IRP2 (iron regulatory protein2) and is thought to affect the turnover of oxidatively damaged proteins. Hoil-1 has an amino-terminal ubiquitin-like domain as well as an RBR signature consisting of two RING finger domains separated by an IBR/DRIL domain.

>cd01806 Nedd8 Nebb8-like ubiquitin protein

Probab=98.85  E-value=2.6e-09  Score=75.40  Aligned_cols=51  Identities=20%  Similarity=0.286  Sum_probs=45.1

Q ss_pred             CCHHHHHHhcccccccCCCCeEEEEEcCCCCeeeecCCCCCcCCCCCCCCCcEEEEec
Q 028484            1 MSVESVKDKLWRKCGTSVNSMSLELYDDTNTKVAALTDNSRPLGFYSPLQGYRLHVID   58 (208)
Q Consensus         1 ~TI~~LK~KLe~itGi~p~~m~L~l~~~~g~~~~~l~dd~~~L~~y~i~~g~~IhV~D   58 (208)
                      .||++||++|+..+|+||+.|+|.+   +|+.   | +|+.+|++|++++|++||++=
T Consensus        21 ~tv~~lK~~i~~~~g~~~~~qrL~~---~g~~---L-~d~~tl~~~~i~~g~~i~l~~   71 (76)
T cd01806          21 DKVERIKERVEEKEGIPPQQQRLIY---SGKQ---M-NDDKTAADYKLEGGSVLHLVL   71 (76)
T ss_pred             CCHHHHHHHHhHhhCCChhhEEEEE---CCeE---c-cCCCCHHHcCCCCCCEEEEEE
Confidence            4899999999999999999999996   4665   3 567899999999999999974

Nedd8 (also known as Rub1) has a single conserved ubiquitin-like domain that is part of a protein modification pathway similar to that of ubiquitin. Nedd8 modifies a family of molecular scaffold proteins called cullins that are responsible for assembling the ROC1/Rbx1 RING-based E3 ubiquitin ligases, of which several play a direct role in tumorigenesis.

>PTZ00044 ubiquitin; Provisional

Probab=98.84  E-value=1.8e-09  Score=76.73  Aligned_cols=50  Identities=24%  Similarity=0.378  Sum_probs=45.1

Q ss_pred             CCHHHHHHhcccccccCCCCeEEEEEcCCCCeeeecCCCCCcCCCCCCCCCcEEEEe
Q 028484            1 MSVESVKDKLWRKCGTSVNSMSLELYDDTNTKVAALTDNSRPLGFYSPLQGYRLHVI   57 (208)
Q Consensus         1 ~TI~~LK~KLe~itGi~p~~m~L~l~~~~g~~~~~l~dd~~~L~~y~i~~g~~IhV~   57 (208)
                      +||++||+||+..+|+||+.|+|.+   .|+.   | +|..+|++|+++++++||++
T Consensus        21 ~tv~~lK~~i~~~~gi~~~~q~L~~---~g~~---L-~d~~~l~~~~i~~~~~i~l~   70 (76)
T PTZ00044         21 NTVQQVKMALQEKEGIDVKQIRLIY---SGKQ---M-SDDLKLSDYKVVPGSTIHMV   70 (76)
T ss_pred             CcHHHHHHHHHHHHCCCHHHeEEEE---CCEE---c-cCCCcHHHcCCCCCCEEEEE
Confidence            5899999999999999999999996   4665   4 57788999999999999997

>cd01809 Scythe_N Ubiquitin-like domain of Scythe protein

Probab=98.83  E-value=2.2e-09  Score=74.98  Aligned_cols=51  Identities=22%  Similarity=0.384  Sum_probs=45.1

Q ss_pred             CCHHHHHHhcccccccCCCCeEEEEEcCCCCeeeecCCCCCcCCCCCCCCCcEEEEec
Q 028484            1 MSVESVKDKLWRKCGTSVNSMSLELYDDTNTKVAALTDNSRPLGFYSPLQGYRLHVID   58 (208)
Q Consensus         1 ~TI~~LK~KLe~itGi~p~~m~L~l~~~~g~~~~~l~dd~~~L~~y~i~~g~~IhV~D   58 (208)
                      .||++||++|+..+|+||+.|+|.+   +|+.   | +|+++|++|++++|++||++-
T Consensus        21 ~tv~~lK~~i~~~~gi~~~~q~L~~---~g~~---L-~d~~~L~~~~i~~~~~l~l~~   71 (72)
T cd01809          21 ITVLDLKEKIAEEVGIPVEQQRLIY---SGRV---L-KDDETLSEYKVEDGHTIHLVK   71 (72)
T ss_pred             CcHHHHHHHHHHHHCcCHHHeEEEE---CCEE---C-CCcCcHHHCCCCCCCEEEEEe
Confidence            5899999999999999999999997   4654   3 567899999999999999974

Scythe protein (also known as Bat3) is an apoptotic regulator that is highly conserved in eukaryotes and contains a ubiquitin-like domain near its N-terminus. Scythe binds reaper, a potent apoptotic inducer, and Scythe/Reaper are thought to signal apoptosis, in part through regulating the folding and activity of apoptotic signaling molecules.

>cd01795 USP48_C USP ubiquitin-specific protease

Probab=98.81  E-value=1.8e-09  Score=81.53  Aligned_cols=75  Identities=15%  Similarity=0.217  Sum_probs=61.2

Q ss_pred             CCHHHHHHhcccccccCCCCeEEEEEcCCCCeeeecCCCCCcCCCCCCCCCcEEEEecCCCCCccCCCcccCCCcceeee
Q 028484            1 MSVESVKDKLWRKCGTSVNSMSLELYDDTNTKVAALTDNSRPLGFYSPLQGYRLHVIDLDPSSVTSGGWLEDTSLVEKYT   80 (208)
Q Consensus         1 ~TI~~LK~KLe~itGi~p~~m~L~l~~~~g~~~~~l~dd~~~L~~y~i~~g~~IhV~D~~p~s~~~~~~l~D~s~vek~~   80 (208)
                      .||.+||.+|..++|++|.+|+|.+.   |+   .|.||+++|++|++.++++|++.=++|..--.  ..+|+-+|   -
T Consensus        25 ~TVg~LK~lImQ~f~V~P~dQkL~~d---G~---~L~DDsrTLssyGv~sgSvl~LlideP~~d~~--~~~~~~~~---~   93 (107)
T cd01795          25 QTLKELKIQIMHAFSVAPFDQNLSID---GK---ILSDDCATLGTLGVIPESVILLKADEPIADYA--AMDDVMQV---C   93 (107)
T ss_pred             ccHHHHHHHHHHHhcCCcccceeeec---Cc---eeccCCccHHhcCCCCCCEEEEEecCCcccHH--HHHHHHHh---c
Confidence            48999999999999999999999984   76   48899999999999999999999888854322  24565555   6


Q ss_pred             cCHHHH
Q 028484           81 ISEEEY   86 (208)
Q Consensus        81 ls~e~Y   86 (208)
                      |+||-+
T Consensus        94 ~~~~~~   99 (107)
T cd01795          94 MPEEGF   99 (107)
T ss_pred             Cccccc
Confidence            776644

The USP (ubiquitin-specific protease) family is one of at least seven deubiquitylating enzyme (DUB) families capable of deconjugating ubiquitin and ubiquitin-like adducts. While the USP's have a conserved catalytic core domain, they differ in their domain architectures. This subfamily, which includes USP31, and USP48, has a carboxy-terminal ubiquitin-like domain in addition to a DUSP (domain of ubiquitin-specific proteases) domain,

>cd01793 Fubi Fubi ubiquitin-like protein

Probab=98.80  E-value=3.6e-09  Score=75.30  Aligned_cols=50  Identities=22%  Similarity=0.222  Sum_probs=45.3

Q ss_pred             CCHHHHHHhcccccccCCCCeEEEEEcCCCCeeeecCCCCCcCCCCCCCCCcEEEEe
Q 028484            1 MSVESVKDKLWRKCGTSVNSMSLELYDDTNTKVAALTDNSRPLGFYSPLQGYRLHVI   57 (208)
Q Consensus         1 ~TI~~LK~KLe~itGi~p~~m~L~l~~~~g~~~~~l~dd~~~L~~y~i~~g~~IhV~   57 (208)
                      .||++||++|+..+|+|+++|+|.+   .|+.   | +|+.+|++|+++++++||++
T Consensus        19 ~tV~~lK~~i~~~~gip~~~q~Li~---~Gk~---L-~D~~tL~~~~i~~~~tl~l~   68 (74)
T cd01793          19 ETVSDIKAHVAGLEGIDVEDQVLLL---AGVP---L-EDDATLGQCGVEELCTLEVA   68 (74)
T ss_pred             CcHHHHHHHHHhhhCCCHHHEEEEE---CCeE---C-CCCCCHHHcCCCCCCEEEEE
Confidence            5899999999999999999999997   4766   3 57799999999999999997

Fubi is a ubiquitin-like protein encoded by the fau gene which has an N-terminal ubiquitin-like domain (also referred to as FUBI) fused to the ribosomal protein S30. Fubi is thought to be a tumor suppressor protein and the FUBI domain may act as a substitute or an inhibitor of ubiquitin or one of ubiquitin's close relatives UCRP, FAT10, and Nedd8.

>cd01812 BAG1_N Ubiquitin-like domain of BAG1

Probab=98.76  E-value=4.9e-09  Score=73.23  Aligned_cols=50  Identities=14%  Similarity=0.201  Sum_probs=44.3

Q ss_pred             CCHHHHHHhcccccccCCCCeEEEEEcCCCCeeeecCCCCCcCCCCCCCCCcEEEEe
Q 028484            1 MSVESVKDKLWRKCGTSVNSMSLELYDDTNTKVAALTDNSRPLGFYSPLQGYRLHVI   57 (208)
Q Consensus         1 ~TI~~LK~KLe~itGi~p~~m~L~l~~~~g~~~~~l~dd~~~L~~y~i~~g~~IhV~   57 (208)
                      +||.+||++|+..||+||+.|+|.+.   |+.   + +|+++|++|++++|++|||+
T Consensus        20 ~tv~~lK~~i~~~~gi~~~~q~L~~~---g~~---l-~d~~~L~~~~i~~g~~l~v~   69 (71)
T cd01812          20 ATFGDLKKMLAPVTGVEPRDQKLIFK---GKE---R-DDAETLDMSGVKDGSKVMLL   69 (71)
T ss_pred             CcHHHHHHHHHHhhCCChHHeEEeeC---Ccc---c-CccCcHHHcCCCCCCEEEEe
Confidence            58999999999999999999999974   654   3 46789999999999999986

BAG1_N N-terminal ubiquitin-like (Ubl) domain of the BAG1 protein. This domain occurs together with the BAG domain and is closely related to the Ubl domain of a family of deubiquitinases that includes Rpn11, UBP6 (USP14), USP7 (HAUSP).

>cd01803 Ubiquitin Ubiquitin

Probab=98.75  E-value=5.3e-09  Score=73.78  Aligned_cols=50  Identities=26%  Similarity=0.396  Sum_probs=44.6

Q ss_pred             CCHHHHHHhcccccccCCCCeEEEEEcCCCCeeeecCCCCCcCCCCCCCCCcEEEEe
Q 028484            1 MSVESVKDKLWRKCGTSVNSMSLELYDDTNTKVAALTDNSRPLGFYSPLQGYRLHVI   57 (208)
Q Consensus         1 ~TI~~LK~KLe~itGi~p~~m~L~l~~~~g~~~~~l~dd~~~L~~y~i~~g~~IhV~   57 (208)
                      .||++||++|+..+|+||+.|+|.+   +|+.   | +|+.+|++|++++|++|||+
T Consensus        21 ~tV~~lK~~i~~~~g~~~~~q~L~~---~g~~---L-~d~~~L~~~~i~~~~~i~l~   70 (76)
T cd01803          21 DTIENVKAKIQDKEGIPPDQQRLIF---AGKQ---L-EDGRTLSDYNIQKESTLHLV   70 (76)
T ss_pred             CcHHHHHHHHHHHhCCCHHHeEEEE---CCEE---C-CCCCcHHHcCCCCCCEEEEE
Confidence            5899999999999999999999996   4654   3 57789999999999999997

Ubiquitin (includes Ubq/RPL40e and Ubq/RPS27a fusions as well as homopolymeric multiubiquitin protein chains)

>cd01796 DDI1_N DNA damage inducible protein 1 ubiquitin-like domain

Probab=98.71  E-value=8.8e-09  Score=72.99  Aligned_cols=51  Identities=22%  Similarity=0.280  Sum_probs=45.4

Q ss_pred             CCHHHHHHhcccccccCCCCeEEEEEcCCCCeeeecCCCCCcCCCCCCCCCcEEEEe
Q 028484            1 MSVESVKDKLWRKCGTSVNSMSLELYDDTNTKVAALTDNSRPLGFYSPLQGYRLHVI   57 (208)
Q Consensus         1 ~TI~~LK~KLe~itGi~p~~m~L~l~~~~g~~~~~l~dd~~~L~~y~i~~g~~IhV~   57 (208)
                      +||++||++|+..+|+|+++|+|.+   .|+.   |.|+..+|.+|++++|+.||+.
T Consensus        20 ~TV~~lK~~I~~~~gip~~~q~Li~---~Gk~---L~D~~~~L~~~gi~~~~~l~l~   70 (71)
T cd01796          20 LELENFKALCEAESGIPASQQQLIY---NGRE---LVDNKRLLALYGVKDGDLVVLR   70 (71)
T ss_pred             CCHHHHHHHHHHHhCCCHHHeEEEE---CCeE---ccCCcccHHHcCCCCCCEEEEe
Confidence            5999999999999999999999997   4776   5566789999999999999974

DDI1_N DDI1 (DNA damage inducible protein 1) has an amino-terminal ubiquitin-like domain, an retroviral protease-like (RVP-like) domain, and a UBA (ubiquitin-associated) domain. This CD represents the amino-terminal ubiquitin-like domain of DDI1.

>cd01807 GDX_N ubiquitin-like domain of GDX

Probab=98.70  E-value=9.1e-09  Score=73.13  Aligned_cols=50  Identities=18%  Similarity=0.207  Sum_probs=45.3

Q ss_pred             CCHHHHHHhcccccccCCCCeEEEEEcCCCCeeeecCCCCCcCCCCCCCCCcEEEEe
Q 028484            1 MSVESVKDKLWRKCGTSVNSMSLELYDDTNTKVAALTDNSRPLGFYSPLQGYRLHVI   57 (208)
Q Consensus         1 ~TI~~LK~KLe~itGi~p~~m~L~l~~~~g~~~~~l~dd~~~L~~y~i~~g~~IhV~   57 (208)
                      .||++||++|+..+|+||+.|+|.+   .|+.   | +|+.+|++|+++++++||++
T Consensus        21 ~tV~~lK~~i~~~~gi~~~~q~L~~---~G~~---L-~d~~~L~~~~i~~~~~l~l~   70 (74)
T cd01807          21 ESVSTLKKLVSEHLNVPEEQQRLLF---KGKA---L-ADDKRLSDYSIGPNAKLNLV   70 (74)
T ss_pred             CcHHHHHHHHHHHHCCCHHHeEEEE---CCEE---C-CCCCCHHHCCCCCCCEEEEE
Confidence            5899999999999999999999987   4766   4 56799999999999999997

GDX contains an N-terminal ubiquitin-like domain as well as an uncharacterized c-terminal domain. The function of GDX is unknown.

>cd01797 NIRF_N amino-terminal ubiquitin-like domain of Np95 and NIRF

Probab=98.69  E-value=9.2e-09  Score=74.43  Aligned_cols=50  Identities=12%  Similarity=0.155  Sum_probs=45.4

Q ss_pred             CCHHHHHHhcccccccCCCCeEEEEEcCCCCeeeecCCCCCcCCCCCCCCCcEEEEe
Q 028484            1 MSVESVKDKLWRKCGTSVNSMSLELYDDTNTKVAALTDNSRPLGFYSPLQGYRLHVI   57 (208)
Q Consensus         1 ~TI~~LK~KLe~itGi~p~~m~L~l~~~~g~~~~~l~dd~~~L~~y~i~~g~~IhV~   57 (208)
                      .||++||+||+..+|+|++.|+|.+   .|+.   | +|+.+|++|+++++++||+.
T Consensus        23 ~TV~~lK~~i~~~~gi~~~~QrLi~---~Gk~---L-~D~~tL~~y~i~~~~~i~l~   72 (78)
T cd01797          23 TKVEELREKIQELFNVEPECQRLFY---RGKQ---M-EDGHTLFDYNVGLNDIIQLL   72 (78)
T ss_pred             CcHHHHHHHHHHHhCCCHHHeEEEe---CCEE---C-CCCCCHHHcCCCCCCEEEEE
Confidence            4899999999999999999999987   4766   3 78899999999999999986

NIRF_N This CD represents the amino-terminal ubiquitin-like domain of a family of nuclear proteins that includes Np95 and NIRF (Np95/ICBP90-like RING finger) protein. Both Np95 and NIRF have a domain architecture consisting of a ubiquitin-like domain, a PHD finger, a YDG/SRA domain, Rb-binding motifs and a RING finger domain. Both Np95 and NIRF are ubiquitin ligases that ubiquitinate PCNP (PEST-containing nuclear proteins). While Np95 is capable of binding histones, NIRF is involved in cell cycle regulation.

>cd01794 DC_UbP_C dendritic cell derived ubiquitin-like protein

Probab=98.67  E-value=1.2e-08  Score=72.38  Aligned_cols=50  Identities=18%  Similarity=0.145  Sum_probs=45.3

Q ss_pred             CCHHHHHHhcccccccCCCCeEEEEEcCCCCeeeecCCCCCcCCCCCCCCCcEEEEe
Q 028484            1 MSVESVKDKLWRKCGTSVNSMSLELYDDTNTKVAALTDNSRPLGFYSPLQGYRLHVI   57 (208)
Q Consensus         1 ~TI~~LK~KLe~itGi~p~~m~L~l~~~~g~~~~~l~dd~~~L~~y~i~~g~~IhV~   57 (208)
                      .||.+||++|+...|+||..|+|.+   .|+.   | +|+.+|++|+++++++|||+
T Consensus        19 ~TV~~lK~~I~~~~gi~~~~q~Li~---~G~~---L-~D~~~l~~~~i~~~~tv~~~   68 (70)
T cd01794          19 DTVGQLKKQLQAAEGVDPCCQRWFF---SGKL---L-TDKTRLQETKIQKDYVVQVI   68 (70)
T ss_pred             ChHHHHHHHHHHHhCCCHHHeEEEE---CCeE---C-CCCCCHHHcCCCCCCEEEEE
Confidence            4899999999999999999999987   5765   3 67899999999999999996

DC_UbP (dendritic cell derived ubiquitin-like protein) is a ubiquitin-like protein from human dendritic cells that is expressed in the mitochondrion. The ubiquitin-like domain of this protein is found at the C-terminus and lacks the canonical gly-gly motif of ubiquitin required for ubiquitinization. DC_UbP is expressed in tumor cells but not in normal human adult tissue suggesting a role for DC_UbP in tumorogenesis.

>PF00240 ubiquitin: Ubiquitin family; InterPro: IPR000626 Ubiquitinylation is an ATP-dependent process that involves the action of at least three enzymes: a ubiquitin-activating enzyme (E1, IPR000011 from INTERPRO), a ubiquitin-conjugating enzyme (E2, IPR000608 from INTERPRO), and a ubiquitin ligase (E3, IPR000569 from INTERPRO, IPR003613 from INTERPRO), which work sequentially in a cascade

Probab=98.67  E-value=2.2e-08  Score=69.58  Aligned_cols=50  Identities=22%  Similarity=0.378  Sum_probs=46.0

Q ss_pred             CCHHHHHHhcccccccCCCCeEEEEEcCCCCeeeecCCCCCcCCCCCCCCCcEEEEe
Q 028484            1 MSVESVKDKLWRKCGTSVNSMSLELYDDTNTKVAALTDNSRPLGFYSPLQGYRLHVI   57 (208)
Q Consensus         1 ~TI~~LK~KLe~itGi~p~~m~L~l~~~~g~~~~~l~dd~~~L~~y~i~~g~~IhV~   57 (208)
                      .||.+||++|+..+|+||+.|+|.+   .|+.   | +|+.+|++|++.+|++||+.
T Consensus        16 ~tV~~lK~~i~~~~~~~~~~~~L~~---~G~~---L-~d~~tL~~~~i~~~~~I~l~   65 (69)
T PF00240_consen   16 DTVADLKQKIAEETGIPPEQQRLIY---NGKE---L-DDDKTLSDYGIKDGSTIHLV   65 (69)
T ss_dssp             SBHHHHHHHHHHHHTSTGGGEEEEE---TTEE---E-STTSBTGGGTTSTTEEEEEE
T ss_pred             CCHHHhhhhcccccccccccceeee---eeec---c-cCcCcHHHcCCCCCCEEEEE
Confidence            4899999999999999999999998   5766   4 89999999999999999986

There are many different E3 ligases, which are responsible for the type of ubiquitin chain formed, the specificity of the target protein, and the regulation of the ubiquitinylation process []. Ubiquitinylation is an important regulatory tool that controls the concentration of key signalling proteins, such as those involved in cell cycle control, as well as removing misfolded, damaged or mutant proteins that could be harmful to the cell. Several ubiquitin-like molecules have been discovered, such as Ufm1 (IPR005375 from INTERPRO), SUMO1 (IPR003653 from INTERPRO), NEDD8, Rad23 (IPR004806 from INTERPRO), Elongin B and Parkin (IPR003977 from INTERPRO), the latter being involved in Parkinson's disease []. Ubiquitin is a protein of 76 amino acid residues, found in all eukaryotic cells and whose sequence is extremely well conserved from protozoan to vertebrates. Ubiquitin acts through its post-translational attachment (ubiquitinylation) to other proteins, where these modifications alter the function, location or trafficking of the protein, or targets it for destruction by the 26S proteasome []. The terminal glycine in the C-terminal 4-residue tail of ubiquitin can form an isopeptide bond with a lysine residue in the target protein, or with a lysine in another ubiquitin molecule to form a ubiquitin chain that attaches itself to a target protein. Ubiquitin has seven lysine residues, any one of which can be used to link ubiquitin molecules together, resulting in different structures that alter the target protein in different ways. It appears that Lys(11)-, Lys(29) and Lys(48)-linked poly-ubiquitin chains target the protein to the proteasome for degradation, while mono-ubiquitinylated and Lys(6)- or Lys(63)-linked poly-ubiquitin chains signal reversible modifications in protein activity, location or trafficking []. For example, Lys(63)-linked poly-ubiquitinylation is known to be involved in DNA damage tolerance, inflammatory response, protein trafficking and signal transduction through kinase activation []. In addition, the length of the ubiquitin chain alters the fate of the target protein. Regulatory proteins such as transcription factors and histones are frequent targets of ubquitinylation [].; GO: 0005515 protein binding; PDB: 2DZI_A 2XEW_E 3NOB_E 2KWU_B 2Y5B_F 3PHD_G 2KWV_B 2KOX_A 2XK5_B 3NHE_B ....

>cd01798 parkin_N amino-terminal ubiquitin-like of parkin protein

Probab=98.66  E-value=1.6e-08  Score=71.11  Aligned_cols=50  Identities=14%  Similarity=0.241  Sum_probs=45.1

Q ss_pred             CCHHHHHHhcccccccCCCCeEEEEEcCCCCeeeecCCCCCcCCCCCCCCCcEEEEe
Q 028484            1 MSVESVKDKLWRKCGTSVNSMSLELYDDTNTKVAALTDNSRPLGFYSPLQGYRLHVI   57 (208)
Q Consensus         1 ~TI~~LK~KLe~itGi~p~~m~L~l~~~~g~~~~~l~dd~~~L~~y~i~~g~~IhV~   57 (208)
                      .||++||++|+..+|+|+..|+|.+   .|+.   | +|+.+|++|+++++++|||+
T Consensus        19 ~tV~~lK~~i~~~~gi~~~~q~Li~---~G~~---L-~d~~~l~~~~i~~~stl~l~   68 (70)
T cd01798          19 TDIKQLKEVVAKRQGVPPDQLRVIF---AGKE---L-RNTTTIQECDLGQQSILHAV   68 (70)
T ss_pred             ChHHHHHHHHHHHHCCCHHHeEEEE---CCeE---C-CCCCcHHHcCCCCCCEEEEE
Confidence            5899999999999999999999986   4776   4 67799999999999999986

parkin_N parkin protein is a RING-type E3 ubiquitin ligase with an amino-terminal ubiquitin-like (Ubl) domain and an RBR signature consisting of two RING finger domains separated by an IBR/DRIL domain. Naturally occurring mutations in parkin are thought to cause the disease AR_JP (autosomal-recessive juvenile parkinsonism). Parkin binds the Rpn10 subunit of 26S proteasomes through its Ubl domain.

>cd01815 BMSC_UbP_N Ubiquitin-like domain of BMSC-UbP

Probab=98.62  E-value=2.3e-08  Score=72.16  Aligned_cols=50  Identities=20%  Similarity=0.352  Sum_probs=43.6

Q ss_pred             CCHHHHHHhccccc--ccC-CCCeEEEEEcCCCCeeeecCCCCCcCCCCCCCCCcEEEEe
Q 028484            1 MSVESVKDKLWRKC--GTS-VNSMSLELYDDTNTKVAALTDNSRPLGFYSPLQGYRLHVI   57 (208)
Q Consensus         1 ~TI~~LK~KLe~it--Gi~-p~~m~L~l~~~~g~~~~~l~dd~~~L~~y~i~~g~~IhV~   57 (208)
                      .||.+||+||+..+  |++ |++|||++   .|+.   | +|+++|++|+|++|++||++
T Consensus        21 ~TV~~LK~kI~~~~~egi~~~dqQrLIy---~GKi---L-~D~~TL~dygI~~gstlhLv   73 (75)
T cd01815          21 YQVSTLKQLIAAQLPDSLPDPELIDLIH---CGRK---L-KDDQTLDFYGIQSGSTIHIL   73 (75)
T ss_pred             CcHHHHHHHHHHhhccCCCChHHeEEEe---CCcC---C-CCCCcHHHcCCCCCCEEEEE
Confidence            58999999999996  575 88899998   4775   3 67799999999999999986

BMSC_UbP (bone marrow stromal cell-derived ubiquitin-like protein) has an N-terminal ubiquitin-like (UBQ) domain and a C-terminal ubiquitin-associated (UBA) domain, a domain architecture similar to those of the UBIN, Chap1, and ubiquilin proteins. This CD represents the N-terminal ubiquitin-like domain.

>cd01791 Ubl5 UBL5 ubiquitin-like modifier

Probab=98.62  E-value=2.4e-08  Score=71.48  Aligned_cols=50  Identities=20%  Similarity=0.253  Sum_probs=43.9

Q ss_pred             CCHHHHHHhcccccccCCCCeEEEEEcCCCCeeeecCCCCCcCCCCCCCCCcEEEEe
Q 028484            1 MSVESVKDKLWRKCGTSVNSMSLELYDDTNTKVAALTDNSRPLGFYSPLQGYRLHVI   57 (208)
Q Consensus         1 ~TI~~LK~KLe~itGi~p~~m~L~l~~~~g~~~~~l~dd~~~L~~y~i~~g~~IhV~   57 (208)
                      .||++||++|+...|+||+.|||.+   .|+.   | +|+.+|++|++++|++||+-
T Consensus        22 ~TV~~LK~~I~~~~~~~~~~qrLi~---~Gk~---L-~D~~tL~~ygi~~~stv~l~   71 (73)
T cd01791          22 DTIGDLKKLIAAQTGTRPEKIVLKK---WYTI---F-KDHISLGDYEIHDGMNLELY   71 (73)
T ss_pred             CcHHHHHHHHHHHhCCChHHEEEEe---CCcC---C-CCCCCHHHcCCCCCCEEEEE
Confidence            4899999999999999999999996   3654   3 57789999999999999974

UBL5 (also known as HUB1) is a ubiquitin-like modifier that is both widely expressed and highly phylogenetically conserved. At the C-terminal end of the ubiquitin-like fold of UBL5 is a di-tyrosine motif followed by a single variable residue instead of the characteristic di-glycine found in all other ubiquitin-like modifiers. ULB5 interacts with a cyclin-like kinase called CLK4 but not with other cyclin-like kinase family members.

>cd01810 ISG15_repeat2 ISG15 ubiquitin-like protein, second repeat of 2

Probab=98.56  E-value=4.3e-08  Score=69.70  Aligned_cols=50  Identities=16%  Similarity=0.341  Sum_probs=44.6

Q ss_pred             CCHHHHHHhcccccccCCCCeEEEEEcCCCCeeeecCCCCCcCCCCCCCCCcEEEEe
Q 028484            1 MSVESVKDKLWRKCGTSVNSMSLELYDDTNTKVAALTDNSRPLGFYSPLQGYRLHVI   57 (208)
Q Consensus         1 ~TI~~LK~KLe~itGi~p~~m~L~l~~~~g~~~~~l~dd~~~L~~y~i~~g~~IhV~   57 (208)
                      .||.+||++|+..+|+|++.|+|.+   .|+.   | .|+.+|.+|+++++++||+.
T Consensus        19 ~tV~~lK~~I~~~~gi~~~~q~L~~---~G~~---L-~D~~tL~~~~i~~~~tl~l~   68 (74)
T cd01810          19 QTVATLKQQVSQRERVQADQFWLSF---EGRP---M-EDEHPLGEYGLKPGCTVFMN   68 (74)
T ss_pred             ChHHHHHHHHHHHhCCCHHHeEEEE---CCEE---C-CCCCCHHHcCCCCCCEEEEE
Confidence            4899999999999999999999986   4766   3 46699999999999999986

ISG15 is a ubiquitin-like protein containing two ubiquitin homology domains and becomes conjugated to a variety of proteins when cells are treated with type I interferon or lipopolysaccharide. Although ISG15 has properties similar to those of other ubiquitin-like molecules, it is a unique member of the ubiquitin-like superfamily, whose expression and conjugation to target proteins are tightly regulated by specific signaling pathways, indicating it may have specialized functions in the immune system.

>cd01808 hPLIC_N Ubiquitin-like domain of hPLIC-1 and hPLIC2

Probab=98.53  E-value=5.3e-08  Score=68.65  Aligned_cols=50  Identities=18%  Similarity=0.283  Sum_probs=44.3

Q ss_pred             CCHHHHHHhcccccccCCCCeEEEEEcCCCCeeeecCCCCCcCCCCCCCCCcEEEEe
Q 028484            1 MSVESVKDKLWRKCGTSVNSMSLELYDDTNTKVAALTDNSRPLGFYSPLQGYRLHVI   57 (208)
Q Consensus         1 ~TI~~LK~KLe~itGi~p~~m~L~l~~~~g~~~~~l~dd~~~L~~y~i~~g~~IhV~   57 (208)
                      +||++||++|+..+|++++.|+|.+   .|+.   | +|+.+|.+|++++|++||++
T Consensus        20 ~TV~~lK~~I~~~~~i~~~~~~Li~---~Gk~---L-~d~~tL~~~~i~~~stl~l~   69 (71)
T cd01808          20 ASVKDFKEAVSKKFKANQEQLVLIF---AGKI---L-KDTDTLTQHNIKDGLTVHLV   69 (71)
T ss_pred             ChHHHHHHHHHHHhCCCHHHEEEEE---CCeE---c-CCCCcHHHcCCCCCCEEEEE
Confidence            5899999999999999999999986   5665   3 56789999999999999986

hPLIC-1 and hPLIC-2 (human homologs of the yeast ubiquitin-like Dsk2 protein) are type2 UBL's (ubiquitin-like) proteins that are thought to serve as adaptors that link the ubiquitination machinery to the proteasome. The hPLIC's have an N-terminal UBL domain that binds the S5a subunit of the proteasome and a C-terminal UBA (ubiquitin-associated) domain that binds a ubiquitylated protein.

>cd01802 AN1_N ubiquitin-like domain of AN1

Probab=98.53  E-value=6e-08  Score=73.86  Aligned_cols=50  Identities=30%  Similarity=0.340  Sum_probs=45.1

Q ss_pred             CCHHHHHHhcccccccCCCCeEEEEEcCCCCeeeecCCCCCcCCCCCCCCCcEEEEe
Q 028484            1 MSVESVKDKLWRKCGTSVNSMSLELYDDTNTKVAALTDNSRPLGFYSPLQGYRLHVI   57 (208)
Q Consensus         1 ~TI~~LK~KLe~itGi~p~~m~L~l~~~~g~~~~~l~dd~~~L~~y~i~~g~~IhV~   57 (208)
                      .||++||+||+...|+|++.|+|.+   .|+.   | +|+.+|++|+++++++||++
T Consensus        48 ~TV~~lK~kI~~~~gip~~~QrLi~---~Gk~---L-~D~~tL~dy~I~~~stL~l~   97 (103)
T cd01802          48 ETVISVKAKIQRLEGIPVAQQHLIW---NNME---L-EDEYCLNDYNISEGCTLKLV   97 (103)
T ss_pred             CcHHHHHHHHHHHhCCChHHEEEEE---CCEE---C-CCCCcHHHcCCCCCCEEEEE
Confidence            5899999999999999999999987   5766   3 67799999999999999996

AN1 (also known as ANUBL1 and RSD-7) is ubiquitin-like protein with a testis-specific expression in rats that has an N-terminal ubiquitin-like domain and a C-terminal zinc-binding domain. Unlike ubiquitin polyproteins and most ubiquitin fusion proteins, the N-terminal ubiquitin-like domain of An1 does not undergo proteolytic processing. The function of AN1 is unknown.

>cd01813 UBP_N UBP ubiquitin processing protease

Probab=98.51  E-value=8.5e-08  Score=68.70  Aligned_cols=53  Identities=8%  Similarity=0.016  Sum_probs=44.9

Q ss_pred             CCHHHHHHhcccccccCCCCeEEEEEcCCCCeeeecCCCCCcCCCCCCCCCcEEEEe
Q 028484            1 MSVESVKDKLWRKCGTSVNSMSLELYDDTNTKVAALTDNSRPLGFYSPLQGYRLHVI   57 (208)
Q Consensus         1 ~TI~~LK~KLe~itGi~p~~m~L~l~~~~g~~~~~l~dd~~~L~~y~i~~g~~IhV~   57 (208)
                      .||++||++|+..||+||+.|+|....-.|+.    ..|+.+|++|++.+|..|+++
T Consensus        20 ~Tv~~lK~~i~~~tgvp~~~QKLi~~~~~Gk~----l~D~~~L~~~~i~~g~~i~lm   72 (74)
T cd01813          20 DTVLDLKQFIKTLTGVLPERQKLLGLKVKGKP----AEDDVKISALKLKPNTKIMMM   72 (74)
T ss_pred             CCHHHHHHHHHHHHCCCHHHEEEEeecccCCc----CCCCcCHHHcCCCCCCEEEEE
Confidence            48999999999999999999999962113553    357899999999999999986

The UBP (ubiquitin processing protease) domain (also referred to as USP which stands for "ubiquitin-specific protease") is present at in a large family of cysteine proteases that specifically cleave ubiquitin conjugates. This family includes Rpn11, UBP6 (USP14), USP7 (HAUSP). This domain is closely related to the amino-terminal ubiquitin-like domain of BAG1 (Bcl2-associated anthanogene1) protein and is found only in eukaryotes.

>cd01804 midnolin_N Ubiquitin-like domain of midnolin

Probab=98.44  E-value=1.4e-07  Score=67.98  Aligned_cols=50  Identities=18%  Similarity=0.264  Sum_probs=43.3

Q ss_pred             CCHHHHHHhcccccccCCCCeEEEEEcCCCCeeeecCCCCCcCCCCCCCCCcEEEEec
Q 028484            1 MSVESVKDKLWRKCGTSVNSMSLELYDDTNTKVAALTDNSRPLGFYSPLQGYRLHVID   58 (208)
Q Consensus         1 ~TI~~LK~KLe~itGi~p~~m~L~l~~~~g~~~~~l~dd~~~L~~y~i~~g~~IhV~D   58 (208)
                      .||++||++|+..+|+|++.|+|.+   .|+.   |. |+ +|++|++++|++|||+=
T Consensus        22 ~TV~~LK~~I~~~~~~~~~~qrL~~---~Gk~---L~-d~-~L~~~gi~~~~~i~l~~   71 (78)
T cd01804          22 ETVEGLKKRISQRLKVPKERLALLH---RETR---LS-SG-KLQDLGLGDGSKLTLVP   71 (78)
T ss_pred             CHHHHHHHHHHHHhCCChHHEEEEE---CCcC---CC-CC-cHHHcCCCCCCEEEEEe
Confidence            4899999999999999999999987   3664   44 44 79999999999999974

midnolin_N Midnolin (midbrain nucleolar protein) is expressed in the nucleolus and is thought to regulate genes involved in neurogenesis. Midnolin contains an amino-terminal ubiquitin-like domain.

>cd01769 UBL Ubiquitin-like domain of UBL

Probab=98.41  E-value=2.3e-07  Score=63.46  Aligned_cols=52  Identities=23%  Similarity=0.272  Sum_probs=45.3

Q ss_pred             CCHHHHHHhcccccccCCCCeEEEEEcCCCCeeeecCCCCCcCCCCCCCCCcEEEEecC
Q 028484            1 MSVESVKDKLWRKCGTSVNSMSLELYDDTNTKVAALTDNSRPLGFYSPLQGYRLHVIDL   59 (208)
Q Consensus         1 ~TI~~LK~KLe~itGi~p~~m~L~l~~~~g~~~~~l~dd~~~L~~y~i~~g~~IhV~D~   59 (208)
                      +||++||.+|+..+|+|++.|+|.+   .|+.   + +|+.+|++|++.+++.|+|.+.
T Consensus        18 ~ti~~lK~~i~~~~~~~~~~~~l~~---~g~~---l-~d~~~l~~~~v~~~~~i~v~~~   69 (69)
T cd01769          18 DTVAELKAKIAAKEGVPPEQQRLIY---AGKI---L-KDDKTLSDYGIQDGSTLHLVLR   69 (69)
T ss_pred             ChHHHHHHHHHHHHCcChHHEEEEE---CCcC---C-CCcCCHHHCCCCCCCEEEEEEC
Confidence            5899999999999999999999965   4554   3 6778999999999999999873

UBLs function by remodeling the surface of their target proteins, changing their target's half-life, enzymatic activity, protein-protein interactions, subcellular localization or other properties. At least 10 different ubiquitin-like modifications exist in mammals, and attachment of different ubls to a target leads to different biological consequences. Ubl-conjugation cascades are initiated by activating enzymes, which also coordinate the ubls with their downstream pathways.

>cd01805 RAD23_N Ubiquitin-like domain of RAD23

Probab=98.39  E-value=2.6e-07  Score=65.56  Aligned_cols=53  Identities=17%  Similarity=0.127  Sum_probs=45.8

Q ss_pred             CCHHHHHHhccccccc--CCCCeEEEEEcCCCCeeeecCCCCCcCCCCCCCCCcEEEEecCC
Q 028484            1 MSVESVKDKLWRKCGT--SVNSMSLELYDDTNTKVAALTDNSRPLGFYSPLQGYRLHVIDLD   60 (208)
Q Consensus         1 ~TI~~LK~KLe~itGi--~p~~m~L~l~~~~g~~~~~l~dd~~~L~~y~i~~g~~IhV~D~~   60 (208)
                      .||.+||++|+..+|+  ||+.|+|.+   .|+.   | +|+.+|++|++++|++|+|+=..
T Consensus        21 ~TV~~lK~~i~~~~~i~~~~~~q~L~~---~G~~---L-~d~~~L~~~~i~~~~~i~~~~~~   75 (77)
T cd01805          21 DTVAELKEKIEEEKGCDYPPEQQKLIY---SGKI---L-KDDTTLEEYKIDEKDFVVVMVSK   75 (77)
T ss_pred             CcHHHHHHHHHHhhCCCCChhHeEEEE---CCEE---c-cCCCCHHHcCCCCCCEEEEEEec
Confidence            4899999999999999  999999997   4765   4 56789999999999999987443

RAD23 belongs to a family of adaptor molecules having affinity for both the proteasome and ubiquitinylated proteins and thought to shuttle these ubiquitinylated proteins to the proteasome for destruction. RAD23 interacts with ubiquitin through its C-terminal ubiquitin-associated domains (UBA) and with the proteasome through its N-terminal ubiquitin-like domain (UBL).

>cd01792 ISG15_repeat1 ISG15 ubiquitin-like protein, first repeat of 2

Probab=98.39  E-value=1.5e-07  Score=67.95  Aligned_cols=53  Identities=21%  Similarity=0.246  Sum_probs=44.5

Q ss_pred             CCHHHHHHhcccccccCCCCeEEEEEcCCCCeeeecCCCCCcCCCCCCCCCcEEEEec
Q 028484            1 MSVESVKDKLWRKCGTSVNSMSLELYDDTNTKVAALTDNSRPLGFYSPLQGYRLHVID   58 (208)
Q Consensus         1 ~TI~~LK~KLe~itGi~p~~m~L~l~~~~g~~~~~l~dd~~~L~~y~i~~g~~IhV~D   58 (208)
                      .||++||++|+..+|+|++.|+|.+.. .|+.   | +|+.+|++|++++|++|||+=
T Consensus        23 ~TV~~lK~~I~~~~~i~~~~qrL~~~~-~G~~---L-~D~~tL~~~gi~~gs~l~l~~   75 (80)
T cd01792          23 MTVSELKQQIAQKIGVPAFQQRLAHLD-SREV---L-QDGVPLVSQGLGPGSTVLLVV   75 (80)
T ss_pred             CcHHHHHHHHHHHhCCCHHHEEEEecc-CCCC---C-CCCCCHHHcCCCCCCEEEEEE
Confidence            489999999999999999999996421 5654   3 466899999999999999873

ISG15 is a ubiquitin-like protein containing two ubiquitin homology domains that becomes conjugated to a variety of proteins when cells are treated with type I interferon or lipopolysaccharide. Although ISG15 has properties similar to those of other ubiquitin-like molecules, it is a unique member of the ubiquitin-like superfamily, whose expression and conjugation to target proteins are tightly regulated by specific signaling pathways, indicating it may have specialized functions in the immune system.

>KOG0005 consensus Ubiquitin-like protein [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=98.32  E-value=1.7e-07  Score=64.70  Aligned_cols=49  Identities=22%  Similarity=0.397  Sum_probs=44.0

Q ss_pred             CHHHHHHhcccccccCCCCeEEEEEcCCCCeeeecCCCCCcCCCCCCCCCcEEEEe
Q 028484            2 SVESVKDKLWRKCGTSVNSMSLELYDDTNTKVAALTDNSRPLGFYSPLQGYRLHVI   57 (208)
Q Consensus         2 TI~~LK~KLe~itGi~p~~m~L~l~~~~g~~~~~l~dd~~~L~~y~i~~g~~IhV~   57 (208)
                      +|+.+|+|+|...||||.+|||.+   .|+.    .+|+.+-.+|++..|+.||.+
T Consensus        22 kverIKErvEEkeGIPp~qqrli~---~gkq----m~DD~tA~~Y~~~~GSVlHlv   70 (70)
T KOG0005|consen   22 KVERIKERVEEKEGIPPQQQRLIY---AGKQ----MNDDKTAAHYNLLGGSVLHLV   70 (70)
T ss_pred             HHHHHHHHhhhhcCCCchhhhhhh---cccc----ccccccHHHhhhccceeEeeC
Confidence            689999999999999999999998   4776    268889999999999999974

>smart00213 UBQ Ubiquitin homologues

Probab=98.08  E-value=1.6e-06  Score=58.50  Aligned_cols=45  Identities=24%  Similarity=0.314  Sum_probs=38.6

Q ss_pred             CCHHHHHHhcccccccCCCCeEEEEEcCCCCeeeecCCCCCcCCCCCCCCCc
Q 028484            1 MSVESVKDKLWRKCGTSVNSMSLELYDDTNTKVAALTDNSRPLGFYSPLQGY   52 (208)
Q Consensus         1 ~TI~~LK~KLe~itGi~p~~m~L~l~~~~g~~~~~l~dd~~~L~~y~i~~g~   52 (208)
                      .||++||++|+..+|+||+.|+|.+.   |+.   | .|+.+|++|++++|+
T Consensus        20 ~tv~~lk~~i~~~~~~~~~~~~L~~~---g~~---L-~d~~tL~~~~i~~~~   64 (64)
T smart00213       20 DTVSELKEKIAELTGIPVEQQRLIYK---GKV---L-EDDRTLADYNIQDGS   64 (64)
T ss_pred             CcHHHHHHHHHHHHCCCHHHEEEEEC---CEE---C-CCCCCHHHcCCcCCC
Confidence            48999999999999999999999873   654   4 456899999999874

Ubiquitin-mediated proteolysis is involved in the regulated turnover of proteins required for controlling cell cycle progression

>KOG0004 consensus Ubiquitin/40S ribosomal protein S27a fusion [Translation, ribosomal structure and biogenesis]

Probab=98.07  E-value=2.2e-06  Score=69.49  Aligned_cols=51  Identities=22%  Similarity=0.343  Sum_probs=45.8

Q ss_pred             CCHHHHHHhcccccccCCCCeEEEEEcCCCCeeeecCCCCCcCCCCCCCCCcEEEEec
Q 028484            1 MSVESVKDKLWRKCGTSVNSMSLELYDDTNTKVAALTDNSRPLGFYSPLQGYRLHVID   58 (208)
Q Consensus         1 ~TI~~LK~KLe~itGi~p~~m~L~l~~~~g~~~~~l~dd~~~L~~y~i~~g~~IhV~D   58 (208)
                      .||..+|+||+..+||||++|||++   .|+.+    +|.++|++|+|+.-++||++=
T Consensus        21 ~ti~~~Kakiq~~egIp~dqqrlif---ag~qL----edgrtlSDY~Iqkestl~l~l   71 (156)
T KOG0004|consen   21 DTIDNVKAKIQDKEGIPPDQQRLIF---AGKQL----EDGRTLSDYNIQKESTLHLVL   71 (156)
T ss_pred             ccHHHHHHhhhcccCCCchhhhhhh---hhccc----ccCCccccccccccceEEEEE
Confidence            4899999999999999999999998   47663    566999999999999999985

>cd01790 Herp_N Homocysteine-responsive endoplasmic reticulum-resident ubiquitin-like domain protein

Probab=98.06  E-value=2e-06  Score=62.64  Aligned_cols=50  Identities=16%  Similarity=0.055  Sum_probs=43.1

Q ss_pred             CCHHHHHHhcccccc--cCCCCeEEEEEcCCCCeeeecCCCCCcCCCCC--CCCCcEEEEe
Q 028484            1 MSVESVKDKLWRKCG--TSVNSMSLELYDDTNTKVAALTDNSRPLGFYS--PLQGYRLHVI   57 (208)
Q Consensus         1 ~TI~~LK~KLe~itG--i~p~~m~L~l~~~~g~~~~~l~dd~~~L~~y~--i~~g~~IhV~   57 (208)
                      +||.+||+||+...+  .+|+.|||++   .|+.   | .|+.+|++|.  +.+|.+||++
T Consensus        24 ~TV~~lK~~i~~~~~~~~~~~~QrLIy---~GKi---L-kD~~tL~~~~~~~~~~~tiHLV   77 (79)
T cd01790          24 WTVGELKTHLSRVYPSKPLEQDQRLIY---SGKL---L-PDHLKLRDVLRKQDEYHMVHLV   77 (79)
T ss_pred             ChHHHHHHHHHHhcCCCCChhHeEEEE---cCee---c-cchhhHHHHhhcccCCceEEEE
Confidence            599999999999885  4579999998   4876   4 5779999995  9999999987

Herp (Homocysteine-responsive endoplasmic reticulum-resident ubiquitin-like domain protein) , is an integral membrane protein that is induced by the endoplasmic reticulum (ER) stress response pathway and is involved in improving the balance of folding capacity and protein loads in the ER. Herp has an N-terminal ubiquitin-like domain that is involved in Herp degradation, but is not necessary for its enhancement of amyloid beta-protein generation.

>cd01814 NTGP5 Ubiquitin-like NTGP5 and ATGP4

Probab=97.89  E-value=7.3e-06  Score=63.36  Aligned_cols=54  Identities=24%  Similarity=0.278  Sum_probs=46.0

Q ss_pred             CCHHHHHHhcc-----cccccC--CCCeEEEEEcCCCCeeeecCCCCCcCCCCC------CCCCcEEEEecCCC
Q 028484            1 MSVESVKDKLW-----RKCGTS--VNSMSLELYDDTNTKVAALTDNSRPLGFYS------PLQGYRLHVIDLDP   61 (208)
Q Consensus         1 ~TI~~LK~KLe-----~itGi~--p~~m~L~l~~~~g~~~~~l~dd~~~L~~y~------i~~g~~IhV~D~~p   61 (208)
                      .||++||+||+     ..+|+|  +++|+|++   .|+.   | +|+++|++|+      +....++||+=-.|
T Consensus        26 dTV~~lKekI~~~~p~~ke~~P~~~~~qKLIy---sGKi---L-eD~~TL~d~~~p~g~~~~~~~TmHvvlr~~   92 (113)
T cd01814          26 TTVDFLKERVVSQWPKDKEVGPKTVNEVKLIS---AGKI---L-ENSKTVGECRSPVGDIAGGVITMHVVVQPP   92 (113)
T ss_pred             hHHHHHHHHHHHhcccccccCCCCHHHeEEEe---CCee---c-CCCCcHHHhCCcccccCCCceEEEEEecCC
Confidence            48999999999     778888  99999998   5876   3 6889999999      88889999996543

NTGP5 and ATGP4 are plant-specific isoprenylated GTP-binding proteins with a single fold that resembles ubiquitin. The function of these proteins is unknown.

>PLN02560 enoyl-CoA reductase

Probab=97.89  E-value=1.5e-05  Score=71.61  Aligned_cols=63  Identities=19%  Similarity=0.204  Sum_probs=51.5

Q ss_pred             CCHHHHHHhccccccc-CCCCeEEEEEcCCCCeeeecCCCCCcCCCCCCCCCcEEEEecCCCCC
Q 028484            1 MSVESVKDKLWRKCGT-SVNSMSLELYDDTNTKVAALTDNSRPLGFYSPLQGYRLHVIDLDPSS   63 (208)
Q Consensus         1 ~TI~~LK~KLe~itGi-~p~~m~L~l~~~~g~~~~~l~dd~~~L~~y~i~~g~~IhV~D~~p~s   63 (208)
                      .||++||.+|+...|+ +|+.|+|.+.+.+|+......+|+++|.+|++++|++|+|-|+-|+-
T Consensus        24 aTV~dLK~~Isk~~~~~~~~RqRL~~~~~~gk~~g~~L~d~ktL~d~gv~~gstLy~kDLGpQi   87 (308)
T PLN02560         24 ATVADLKKAIHKRKKKYYPSRQRLTLPLPPGKTRPTVLDDSKSLKDYGLGDGGTVVFKDLGPQV   87 (308)
T ss_pred             CcHHHHHHHHHHHcCCCChhheEEEEecCCCCcCccccCCCCCHHhcCCCCCceEEEEeCCCcC
Confidence            4899999999999997 89999999975555422222357779999999999999999998853

>cd01763 Sumo Small ubiquitin-related modifier (SUMO)

Probab=97.88  E-value=1.4e-05  Score=58.78  Aligned_cols=50  Identities=12%  Similarity=0.251  Sum_probs=45.0

Q ss_pred             CCHHHHHHhcccccccCCCCeEEEEEcCCCCeeeecCCCCCcCCCCCCCCCcEEEEe
Q 028484            1 MSVESVKDKLWRKCGTSVNSMSLELYDDTNTKVAALTDNSRPLGFYSPLQGYRLHVI   57 (208)
Q Consensus         1 ~TI~~LK~KLe~itGi~p~~m~L~l~~~~g~~~~~l~dd~~~L~~y~i~~g~~IhV~   57 (208)
                      .||..||+++....|+|+++|+|.+   +|+.+    ++..++.+|++++|.+|||+
T Consensus        32 ~~l~~l~~~y~~~~gi~~~~~rf~f---~G~~L----~~~~T~~~l~m~d~d~I~v~   81 (87)
T cd01763          32 TPLKKLMEAYCQRQGLSMNSVRFLF---DGQRI----RDNQTPDDLGMEDGDEIEVM   81 (87)
T ss_pred             CHHHHHHHHHHHHhCCCccceEEEE---CCeEC----CCCCCHHHcCCCCCCEEEEE
Confidence            3789999999999999999999998   58763    56789999999999999997

Small ubiquitin-related modifier (SUMO) proteins are conjugated to numerous intracellular targets and serve to modulate protein interaction, localization, activity or stability. SUMO (also known as "Smt3" and "sentrin" in other organisms) is linked to several different pathways, including nucleocytoplasmic transport. Attachment of SUMO to targets proteins is stimulated by PIAS (Protein inhibitor of activated STATs) proteins which serve as E3-like ligases.

>KOG0003 consensus Ubiquitin/60s ribosomal protein L40 fusion [Translation, ribosomal structure and biogenesis]

Probab=97.85  E-value=1.7e-06  Score=66.26  Aligned_cols=51  Identities=22%  Similarity=0.305  Sum_probs=45.9

Q ss_pred             CCHHHHHHhcccccccCCCCeEEEEEcCCCCeeeecCCCCCcCCCCCCCCCcEEEEec
Q 028484            1 MSVESVKDKLWRKCGTSVNSMSLELYDDTNTKVAALTDNSRPLGFYSPLQGYRLHVID   58 (208)
Q Consensus         1 ~TI~~LK~KLe~itGi~p~~m~L~l~~~~g~~~~~l~dd~~~L~~y~i~~g~~IhV~D   58 (208)
                      .||..||+++...+|+||+.|+|++.   |+.    .+|..+|++|+++..++||.+=
T Consensus        21 ~ti~~vKA~i~~~~Gi~~~~~~L~~~---~k~----LED~~Tla~Y~i~~~~Tl~~~~   71 (128)
T KOG0003|consen   21 DTIDNVKAKIQDKEGIPPDQQRLIFA---GKQ----LEDGRTLADYNIQKESTLHLVL   71 (128)
T ss_pred             chHHHHHHHhccccCCCHHHHHHHhc---ccc----cccCCcccccCccchhhhhhhH
Confidence            48999999999999999999999984   665    2899999999999999999874

>cd01801 Tsc13_N Ubiquitin-like domain of Tsc13

Probab=97.50  E-value=0.00014  Score=52.00  Aligned_cols=54  Identities=24%  Similarity=0.228  Sum_probs=43.9

Q ss_pred             CCHHHHHHhccccccc-CCCCeEEEEEcCCCCeeeecCCCCCcCCCCCCCCCcEEEEecC
Q 028484            1 MSVESVKDKLWRKCGT-SVNSMSLELYDDTNTKVAALTDNSRPLGFYSPLQGYRLHVIDL   59 (208)
Q Consensus         1 ~TI~~LK~KLe~itGi-~p~~m~L~l~~~~g~~~~~l~dd~~~L~~y~i~~g~~IhV~D~   59 (208)
                      .||.+||..|+...+. +++.|+|.+. ..|..   | .|+.+|.+|++++|.+|+|-|+
T Consensus        23 aTV~dlk~~i~~~~~~~~~~Rqrl~~~-~~g~~---L-~d~~tL~~~gv~~g~~lyvKDL   77 (77)
T cd01801          23 ATIADLKKLIAKSSPQLTVNRQSLRLE-PKGKS---L-KDDDTLVDLGVGAGATLYVRDL   77 (77)
T ss_pred             ccHHHHHHHHHHHcCCCCcceeEEEeC-CCCcc---c-CCcccHhhcCCCCCCEEEEeeC
Confidence            4899999999998875 7899999864 34554   3 3556799999999999999884

Tsc13_N N-terminal domain of Tsc13. Tsc13 is an enoyl reductase involved in elongation of long chain fatty acids that localizes to the endoplasmic reticulum and is highly enriched in a novel structure marking nuclear-vacuolar junctions.

>TIGR00601 rad23 UV excision repair protein Rad23

Probab=97.40  E-value=0.00012  Score=67.42  Aligned_cols=54  Identities=19%  Similarity=0.212  Sum_probs=46.9

Q ss_pred             CCHHHHHHhcccccc---cCCCCeEEEEEcCCCCeeeecCCCCCcCCCCCCCCCcEEEEecCCC
Q 028484            1 MSVESVKDKLWRKCG---TSVNSMSLELYDDTNTKVAALTDNSRPLGFYSPLQGYRLHVIDLDP   61 (208)
Q Consensus         1 ~TI~~LK~KLe~itG---i~p~~m~L~l~~~~g~~~~~l~dd~~~L~~y~i~~g~~IhV~D~~p   61 (208)
                      .||.+||.||+..+|   +|++.|+|++   .|+.   | .|+++|.+|+|+++..|+|.=..+
T Consensus        21 ~TV~dLK~kI~~~~g~~~ip~~~QkLIy---~Gki---L-~Dd~tL~dy~I~e~~~Ivvmv~k~   77 (378)
T TIGR00601        21 ETVKELKEKIEAEQGKDAYPVAQQKLIY---SGKI---L-SDDKTVREYKIKEKDFVVVMVSKP   77 (378)
T ss_pred             ChHHHHHHHHHHhhCCCCCChhHeEEEE---CCEE---C-CCCCcHHHcCCCCCCEEEEEeccC
Confidence            589999999999999   9999999997   4775   4 567899999999999998886654

All proteins in this family for which functions are known are components of a multiprotein complex used for targeting nucleotide excision repair to specific parts of the genome. In humans, Rad23 complexes with the XPC protein. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).

>KOG0010 consensus Ubiquitin-like protein [Posttranslational modification, protein turnover, chaperones; General function prediction only]

Probab=97.11  E-value=0.00032  Score=66.10  Aligned_cols=54  Identities=17%  Similarity=0.255  Sum_probs=47.8

Q ss_pred             CCHHHHHHhcccccccCCCCeEEEEEcCCCCeeeecCCCCCcCCCCCCCCCcEEEEecCCC
Q 028484            1 MSVESVKDKLWRKCGTSVNSMSLELYDDTNTKVAALTDNSRPLGFYSPLQGYRLHVIDLDP   61 (208)
Q Consensus         1 ~TI~~LK~KLe~itGi~p~~m~L~l~~~~g~~~~~l~dd~~~L~~y~i~~g~~IhV~D~~p   61 (208)
                      .||.+||++|-.+++++++.++|++   .|+.+    -|..+|..|+|+||.+||+|=..+
T Consensus        35 ssV~qlKE~I~~~f~a~~dqlvLIf---aGrIL----KD~dTL~~~gI~Dg~TvHLVik~~   88 (493)
T KOG0010|consen   35 SSVLQLKELIAQRFGAPPDQLVLIY---AGRIL----KDDDTLKQYGIQDGHTVHLVIKSQ   88 (493)
T ss_pred             hHHHHHHHHHHHhcCCChhHeeeee---cCccc----cChhhHHHcCCCCCcEEEEEeccC
Confidence            3799999999999999999999999   48763    388899999999999999997654

>PF11976 Rad60-SLD: Ubiquitin-2 like Rad60 SUMO-like; InterPro: IPR022617 This entry includes small ubiquitin-related modifier (SUMO) proteins

Probab=97.10  E-value=0.00036  Score=48.71  Aligned_cols=50  Identities=20%  Similarity=0.237  Sum_probs=42.9

Q ss_pred             CCHHHHHHhcccccccCC-CCeEEEEEcCCCCeeeecCCCCCcCCCCCCCCCcEEEEe
Q 028484            1 MSVESVKDKLWRKCGTSV-NSMSLELYDDTNTKVAALTDNSRPLGFYSPLQGYRLHVI   57 (208)
Q Consensus         1 ~TI~~LK~KLe~itGi~p-~~m~L~l~~~~g~~~~~l~dd~~~L~~y~i~~g~~IhV~   57 (208)
                      .|++.|.+++....|+|+ +.++|.+   +|+.+    +.+.++.+|++++|..|+|+
T Consensus        21 ~~~~~l~~~~~~~~~i~~~~~~~l~f---dG~~L----~~~~T~~~~~ied~d~Idv~   71 (72)
T PF11976_consen   21 TTVSKLIEKYCEKKGIPPEESIRLIF---DGKRL----DPNDTPEDLGIEDGDTIDVI   71 (72)
T ss_dssp             SCCHHHHHHHHHHHTTTT-TTEEEEE---TTEEE-----TTSCHHHHT-STTEEEEEE
T ss_pred             CcHHHHHHHHHHhhCCCccceEEEEE---CCEEc----CCCCCHHHCCCCCCCEEEEE
Confidence            378899999999999999 9999998   68773    56689999999999999985

SUMOs are small proteins that are covalently attached to lysines as post-translational modifications and are used to control multiple cellular process including signal transduction, nuclear transport and DNA replication and repair []. Unlike ubiquitin, they are not involved in protein degradation. This entry also contains the C-terminal Rad60 DNA repair protein SUMO-like domain.; PDB: 3RD2_A 2JXX_A 3RCZ_A 3GOE_A 3A4S_D 3A4R_B 2IO1_D 1U4A_A 2K1F_A 1WZ0_A ....

>cd01788 ElonginB Ubiquitin-like domain of Elongin B

Probab=96.69  E-value=0.0011  Score=51.37  Aligned_cols=41  Identities=17%  Similarity=0.093  Sum_probs=35.7

Q ss_pred             CCHHHHHHhcccccccCCCCeEEEEEcCCCCeeeecCCCCCcCCCCCC
Q 028484            1 MSVESVKDKLWRKCGTSVNSMSLELYDDTNTKVAALTDNSRPLGFYSP   48 (208)
Q Consensus         1 ~TI~~LK~KLe~itGi~p~~m~L~l~~~~g~~~~~l~dd~~~L~~y~i   48 (208)
                      .||-+||.+|+-|+-.||++|+|. .  ++.    +.+|+++|++|++
T Consensus        22 ~tVlelK~~iegI~k~pp~dQrL~-k--d~q----vLeD~kTL~d~g~   62 (119)
T cd01788          22 TTVYELKRIVEGILKRPPEDQRLY-K--DDQ----LLDDGKTLGDCGF   62 (119)
T ss_pred             ccHHHHHHHHHHHhcCChhHheee-c--Cce----eecccccHHHcCc
Confidence            378999999999999999999998 3  443    3489999999998

Elongin B is part of an E3 ubiquitin ligase complex called VEC that activates ubiquitylation by the E2 ubiquitin-conjugating enzyme Ubc5. VEC is composed of von Hippel-Lindau tumor suppressor protein (pVHL), elongin C, cullin 2, NEDD8, and Rbx1. ElonginB binds elonginC to form the elonginBC complex which is a positive regulator of RNA polymerase II elongation factor Elongin A. The BC complex then binds VHL (von Hippel-Lindau) tumour suppressor protein to form a VCB ternary complex. Elongin B has a ubiquitin-llike domain.

>cd01811 OASL_repeat1 2'-5' oligoadenylate synthetase-like protein, repeat 1 of 2

Probab=96.67  E-value=0.0027  Score=45.80  Aligned_cols=58  Identities=16%  Similarity=0.263  Sum_probs=51.2

Q ss_pred             CHHHHHHhcccccccCCCCeEEEEEcCCCCeeeecCCCCCcCCCCCCCCCcEEEEecCCCC
Q 028484            2 SVESVKDKLWRKCGTSVNSMSLELYDDTNTKVAALTDNSRPLGFYSPLQGYRLHVIDLDPS   62 (208)
Q Consensus         2 TI~~LK~KLe~itGi~p~~m~L~l~~~~g~~~~~l~dd~~~L~~y~i~~g~~IhV~D~~p~   62 (208)
                      +|-.||+||..--|++- .|+|.|..+.|+..  +..+..+|++|+|=.-..|-|.+|.|+
T Consensus        22 pI~k~K~kI~~~~~~~g-~qrLsfQepgg~rq--lL~s~~sLA~yGiFs~~~i~lleT~p~   79 (80)
T cd01811          22 PIRKIKEKIRRSRNCSG-LQRLSFQEPGGERQ--LLSSRKSLADYGIFSKTNICLLETFPP   79 (80)
T ss_pred             hHHHHHHHHHHhhCccc-ceEEEeecCCcccc--cccccccHhhhcceeccEEEEEecCCC
Confidence            68899999999999987 99999999888753  457889999999999999999999874

OASL_repeat1 (2'-5' oligoadenylate synthetase-like protein) belongs to a family of interferon-induced 2'-5' oligoadenylate synthetases which are important for the antiviral activity of interferons. While each member of this famliy has a conserved N-terminal OAS catalytic domain, only OASL has two tandem ubiquitin-like repeats located at the C-terminus and this CD represents one of those repeats.

>cd00196 UBQ Ubiquitin-like proteins

Probab=96.64  E-value=0.0021  Score=40.59  Aligned_cols=51  Identities=24%  Similarity=0.256  Sum_probs=41.4

Q ss_pred             CCHHHHHHhcccccccCCCCeEEEEEcCCCCeeeecCCCCCcCCCCCCCCCcEEEEec
Q 028484            1 MSVESVKDKLWRKCGTSVNSMSLELYDDTNTKVAALTDNSRPLGFYSPLQGYRLHVID   58 (208)
Q Consensus         1 ~TI~~LK~KLe~itGi~p~~m~L~l~~~~g~~~~~l~dd~~~L~~y~i~~g~~IhV~D   58 (208)
                      +|+.+||.+|...+|++|+.|.|.+.   +..    ..+...+.+|.+.++.+|++..
T Consensus        18 ~tv~~l~~~i~~~~~~~~~~~~l~~~---~~~----~~~~~~~~~~~~~~~~~i~~~~   68 (69)
T cd00196          18 TTVADLKEKLAKKLGLPPEQQRLLVN---GKI----LPDSLTLEDYGLQDGDELVLVP   68 (69)
T ss_pred             CcHHHHHHHHHHHHCcChHHeEEEEC---CeE----CCCCCcHHHcCCCCCCEEEEEe
Confidence            58999999999999999999999873   433    1344455789999999999875

Ubiquitin homologs; Includes ubiquitin and ubiquitin-like proteins. Ubiquitin-mediated proteolysis is part of the regulated turnover of proteins required for controlling cell cycle progression. Other family members are protein modifiers that perform a wide range of functions. Ubiquitination usually results in a covalent bond between the C-terminus of ubiquitin and the epsilon-amino group of a substrate lysine. The three-step mechanism requires an activating enzyme (E1) that forms a thiol ester with the C-terminal carboxy group, a conjugating enzyme (E2) that transiently carries the activated ubiquitin molecule as a thiol ester, and a ligase (E3) that transfers the activated ubiquitin from the E2 to the substrate lysine residue. In poly-ubiquitination, ubiquitin itself is the substrate.

>KOG0001 consensus Ubiquitin and ubiquitin-like proteins [Posttranslational modification, protein turnover, chaperones; General function prediction only]

Probab=96.46  E-value=0.0037  Score=41.84  Aligned_cols=50  Identities=30%  Similarity=0.426  Sum_probs=42.1

Q ss_pred             CHHHHHHhcccccccCCCCeEEEEEcCCCCeeeecCCCCCcCCCCCCCCCcEEEEec
Q 028484            2 SVESVKDKLWRKCGTSVNSMSLELYDDTNTKVAALTDNSRPLGFYSPLQGYRLHVID   58 (208)
Q Consensus         2 TI~~LK~KLe~itGi~p~~m~L~l~~~~g~~~~~l~dd~~~L~~y~i~~g~~IhV~D   58 (208)
                      +|..+|.||+...|+++..|+|...   ++.   + .|+.+|++|+|..+.++|+.-
T Consensus        21 ~i~~~k~~i~~~~~~~~~~q~~~~~---~~~---l-~d~~~l~~~~i~~~~~~~l~~   70 (75)
T KOG0001|consen   21 TIEVVKAKIRDKEGIPVDQQRLIFG---GKP---L-EDGRTLADYNIQEGSTLHLVL   70 (75)
T ss_pred             HHHHHHHHHHhhcCCCCeeEEEEEC---CEE---C-cCCCcHHHhCCCCCCEEEEEE
Confidence            6788999999999999999997762   433   3 466999999999999999874

>PF11543 UN_NPL4: Nuclear pore localisation protein NPL4; InterPro: IPR024682 Npl4, along with Ufd1, forms the heterodimer adaptor complex UN, which is involved in the recruitment of p97, an AAA ATPase, for tasks involving the ubiquitin pathway

Probab=95.96  E-value=0.0026  Score=46.32  Aligned_cols=55  Identities=16%  Similarity=0.183  Sum_probs=30.6

Q ss_pred             CCHHHHHHhcccccccCCCCeEEEEEcCCCCeeeecCCCCCcCCCCCCCCCcEEEEe
Q 028484            1 MSVESVKDKLWRKCGTSVNSMSLELYDDTNTKVAALTDNSRPLGFYSPLQGYRLHVI   57 (208)
Q Consensus         1 ~TI~~LK~KLe~itGi~p~~m~L~l~~~~g~~~~~l~dd~~~L~~y~i~~g~~IhV~   57 (208)
                      .|+++|++||...+++|+..+.|.........+  ..++.++|++++++.|.-|.+.
T Consensus        24 ~t~~~L~~kI~~~l~~~~~~~~L~~~~~~~~~l--~s~~~~tl~~lglkHGdmlyL~   78 (80)
T PF11543_consen   24 STLSDLKEKISEQLSIPDSSQSLSKDRNNKEEL--KSSDSKTLSSLGLKHGDMLYLK   78 (80)
T ss_dssp             SBHHHHHHHHHHHS---TTT---BSSGGGGGCS--SS-TT-CCCCT---TT-EEE--
T ss_pred             ccHHHHHHHHHHHcCCCCcceEEEecCCCCccc--ccCCcCCHHHcCCCCccEEEEe
Confidence            489999999999999999998886532222222  1356899999999999988763

Npl4 has a N-terminal ubiquitin-like domain which has within its structure a beta-grasp fold with a helical insert []. This entry represents the ubiquitin-like domain.; PDB: 2PJH_A 1WF9_A.

>KOG4248 consensus Ubiquitin-like protein, regulator of apoptosis [Posttranslational modification, protein turnover, chaperones]

Probab=95.76  E-value=0.0084  Score=61.03  Aligned_cols=53  Identities=15%  Similarity=0.342  Sum_probs=48.0

Q ss_pred             CCHHHHHHhcccccccCCCCeEEEEEcCCCCeeeecCCCCCcCCCCCCCCCcEEEEecCCC
Q 028484            1 MSVESVKDKLWRKCGTSVNSMSLELYDDTNTKVAALTDNSRPLGFYSPLQGYRLHVIDLDP   61 (208)
Q Consensus         1 ~TI~~LK~KLe~itGi~p~~m~L~l~~~~g~~~~~l~dd~~~L~~y~i~~g~~IhV~D~~p   61 (208)
                      +||.+||..|-..+-|+...|||++   .|..+    .|++++..|++ ||-+|||+|--|
T Consensus        23 ~ti~~~~d~~r~~~ni~s~~qr~i~---~grvl----~~~k~vq~~~v-dgk~~hlverpp   75 (1143)
T KOG4248|consen   23 MTIKEFKDHIRASVNIPSEKQRLIY---QGRVL----QDDKKVQEYNV-DGKVIHLVERPP   75 (1143)
T ss_pred             HHHHHHHHHHHHhcccccccceeee---cceee----ccchhhhhccC-CCeEEEeeccCC
Confidence            6899999999999999999999998   47763    78899999999 999999999754

>KOG2982 consensus Uncharacterized conserved protein [Function unknown]

Probab=95.70  E-value=0.012  Score=53.40  Aligned_cols=56  Identities=21%  Similarity=0.229  Sum_probs=47.9

Q ss_pred             CHHHHHHhcccccccCCCCeEEEEEcCCCCee-eecCCCCCcCCCCCCCCCcEEEEe
Q 028484            2 SVESVKDKLWRKCGTSVNSMSLELYDDTNTKV-AALTDNSRPLGFYSPLQGYRLHVI   57 (208)
Q Consensus         2 TI~~LK~KLe~itGi~p~~m~L~l~~~~g~~~-~~l~dd~~~L~~y~i~~g~~IhV~   57 (208)
                      ||-+++.+|++.+|+-+.-|+|.+.+.+|+.- ..-.+-+++|-+|+|++|..+.|.
T Consensus       359 TV~D~~~~Ld~~VGvk~trMkLf~L~eD~rt~~~ss~~~N~~L~~fkIedGDs~lvq  415 (418)
T KOG2982|consen  359 TVLDFMKILDPKVGVKFTRMKLFLLREDGRTDDFSSSDYNMPLHYFKIEDGDSFLVQ  415 (418)
T ss_pred             HHHHHHHHhccccccccceeEEEEEcccCccCCccccCCCCcceEEeccCCCEeeee
Confidence            78999999999999999999999998888752 122366899999999999988774

>KOG0011 consensus Nucleotide excision repair factor NEF2, RAD23 component [Replication, recombination and repair]

Probab=94.98  E-value=0.02  Score=51.81  Aligned_cols=54  Identities=17%  Similarity=0.142  Sum_probs=46.2

Q ss_pred             CCHHHHHHhcccccc--cCCCCeEEEEEcCCCCeeeecCCCCCcCCCCCCCCCcEEEEecCCC
Q 028484            1 MSVESVKDKLWRKCG--TSVNSMSLELYDDTNTKVAALTDNSRPLGFYSPLQGYRLHVIDLDP   61 (208)
Q Consensus         1 ~TI~~LK~KLe~itG--i~p~~m~L~l~~~~g~~~~~l~dd~~~L~~y~i~~g~~IhV~D~~p   61 (208)
                      .||.+||.||+...|  .|++.|+|+.   +|+.+    .|+++++.|++.+..-|.|.=+.+
T Consensus        21 ~tV~evK~kIet~~g~dyP~~~QkLIy---~GkiL----~D~~tv~Eykv~E~~fiVvMlsK~   76 (340)
T KOG0011|consen   21 DTVVEVKKKIETEKGPDYPAEQQKLIY---SGKIL----KDETTVGEYKVKEKKFIVVMLSKD   76 (340)
T ss_pred             hhHHHHHHHHHhccCCCCchhhheeee---cceec----cCCcchhhhccccCceEEEEEecC
Confidence            389999999999999  9999999997   58762    799999999999998777765444

>KOG1872 consensus Ubiquitin-specific protease [Posttranslational modification, protein turnover, chaperones]

Probab=94.31  E-value=0.054  Score=51.12  Aligned_cols=52  Identities=10%  Similarity=0.092  Sum_probs=43.9

Q ss_pred             CHHHHHHhcccccccCCCCeEEEEEcCCCCeeeecCCCCCcCCCCCCCCCcEEEEecCC
Q 028484            2 SVESVKDKLWRKCGTSVNSMSLELYDDTNTKVAALTDNSRPLGFYSPLQGYRLHVIDLD   60 (208)
Q Consensus         2 TI~~LK~KLe~itGi~p~~m~L~l~~~~g~~~~~l~dd~~~L~~y~i~~g~~IhV~D~~   60 (208)
                      |..-||++|+..||++|..|++.+.   |..    ..|+..++..++++|++||+.=+.
T Consensus        25 t~~vlKaqlf~LTgV~PeRQKv~vK---Gg~----a~dd~~~~al~iKpn~~lmMmGt~   76 (473)
T KOG1872|consen   25 TPSVLKAQLFALTGVPPERQKVMVK---GGL----AKDDVDWGALQIKPNETLMMMGTA   76 (473)
T ss_pred             chHHHHHHHHHhcCCCccceeEEEe---ccc----ccccccccccccCCCCEEEeeccc
Confidence            6788999999999999999998886   443    245557889999999999998765

>PTZ00243 ABC transporter; Provisional

Probab=93.89  E-value=0.069  Score=57.37  Aligned_cols=59  Identities=24%  Similarity=0.410  Sum_probs=47.3

Q ss_pred             cCCCCcCCEEEEc-CCCceeEEEEecccCCC-CCCcEEEEEEeCCC--------------CCCCcEECCEEeeec
Q 028484          121 CSNITVGDRCEVD-PGAKRGVVKYVGQAESI-APGFWVGIQYDEPL--------------GKHNGIVKGVRYFEC  179 (208)
Q Consensus       121 ~~~~~vG~rv~v~-~~~~~G~vryvG~~~~~-~~g~wvGVelde~~--------------GkndGs~~G~rYF~c  179 (208)
                      +=+-.||.||-+. ...-+|++||||.+.-. .++.++||||.-|-              +-|+|.+.|.+.|..
T Consensus       122 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  196 (1560)
T PTZ00243        122 AWNCMVGAEVVSTLDASSRGVLRWVGVPQQGGYTRMMAGVEWSVPPALRTAARSDDSGASPFFNGVAHGEHLFTP  196 (1560)
T ss_pred             ccccccccEEEeeccccccceEEeecccccCCCcceeeeeeeccCchhhhcccCCCCCCccccccccccccccCc
Confidence            3456899999886 23679999999999653 37799999999651              139999999999987

>KOG4495 consensus RNA polymerase II transcription elongation factor Elongin/SIII, subunit elongin B [Transcription]

Probab=93.29  E-value=0.031  Score=42.30  Aligned_cols=41  Identities=29%  Similarity=0.273  Sum_probs=34.7

Q ss_pred             CHHHHHHhcccccccCCCCeEEEEEcCCCCeeeecCCCCCcCCCCC
Q 028484            2 SVESVKDKLWRKCGTSVNSMSLELYDDTNTKVAALTDNSRPLGFYS   47 (208)
Q Consensus         2 TI~~LK~KLe~itGi~p~~m~L~l~~~~g~~~~~l~dd~~~L~~y~   47 (208)
                      ||-+||.||+-|+--|++.|+|...+.+  .   +.+|.++|++-|
T Consensus        23 tV~elK~~l~gi~~~Pvn~qrL~kmd~e--q---lL~D~ktL~d~g   63 (110)
T KOG4495|consen   23 TVFELKRKLEGILKRPVNEQRLYKMDTE--Q---LLDDGKTLGDCG   63 (110)
T ss_pred             cHHHHHHHHHHHHhCCCcchheeecCHH--H---Hhhccchhhhcc
Confidence            7899999999999999999999986432  2   458899999884

>PRK10708 hypothetical protein; Provisional

Probab=93.22  E-value=0.45  Score=32.62  Aligned_cols=57  Identities=26%  Similarity=0.375  Sum_probs=43.7

Q ss_pred             CCcCCEEEEc-CC--CceeEEEEecccCCCCCCcEEEEEEeCCCCCCCcEECCEEeeec-CCCceeeecCC
Q 028484          124 ITVGDRCEVD-PG--AKRGVVKYVGQAESIAPGFWVGIQYDEPLGKHNGIVKGVRYFEC-PPLHGAMVRPD  190 (208)
Q Consensus       124 ~~vG~rv~v~-~~--~~~G~vryvG~~~~~~~g~wvGVelde~~GkndGs~~G~rYF~c-~~~~G~Fv~~~  190 (208)
                      ++|++||.|. .|  .|.|+|.-+-  +| ..|++.=|.|++=       -.|+.||.- ...-|+||.|.
T Consensus         1 MkvnD~VtVKTDG~~rR~G~iLavE--~F-~EG~MyLvaL~dY-------P~GiWFFNE~~~~~G~FVep~   61 (62)
T PRK10708          1 MKVNDRVTVKTDGGPRRPGVVLAVE--EF-SEGTMYLVSLEDY-------PLGIWFFNEAGHQDGIFVEKA   61 (62)
T ss_pred             CccccEEEEecCCCccccceEEEEe--ec-cCcEEEEEEcCcC-------CCceEEEeccCCCCceEeccc
Confidence            4789999995 23  5679999884  34 7899999999862       136778877 68889999874

>PF10781 DSRB: Dextransucrase DSRB; InterPro: IPR019717 DSRB is a novel dextransucrase which produces a dextran different from the typical dextran, as it contains (1-6) and (1-2) linkages, when this strain is grown in the presence of sucrose []

Probab=93.20  E-value=0.42  Score=32.75  Aligned_cols=57  Identities=25%  Similarity=0.422  Sum_probs=43.6

Q ss_pred             CCcCCEEEEc-CC--CceeEEEEecccCCCCCCcEEEEEEeCCCCCCCcEECCEEeeec-CCCceeeecCC
Q 028484          124 ITVGDRCEVD-PG--AKRGVVKYVGQAESIAPGFWVGIQYDEPLGKHNGIVKGVRYFEC-PPLHGAMVRPD  190 (208)
Q Consensus       124 ~~vG~rv~v~-~~--~~~G~vryvG~~~~~~~g~wvGVelde~~GkndGs~~G~rYF~c-~~~~G~Fv~~~  190 (208)
                      ++|.+||.|. .|  .|.|+|.-+-  +| ..|++.=|.|++=       -.|+.||.- ...-|+||.|.
T Consensus         1 MkvnD~VtVKTDG~~rR~G~ilavE--~F-~EG~MYLvaL~dY-------P~GiWFFNE~~~~dG~FVep~   61 (62)
T PF10781_consen    1 MKVNDRVTVKTDGGPRREGVILAVE--PF-NEGTMYLVALEDY-------PAGIWFFNEKDSPDGTFVEPR   61 (62)
T ss_pred             CccccEEEEecCCcccccceEEEEe--ec-cCcEEEEEEcCcC-------CcceEEEecCCCCCcEEeeec
Confidence            4789999995 23  4679999884  34 7899999999862       136778877 78899999875

>PF13881 Rad60-SLD_2: Ubiquitin-2 like Rad60 SUMO-like; PDB: 1SE9_A 1WGH_A 2GOW_A

Probab=92.50  E-value=0.2  Score=38.61  Aligned_cols=52  Identities=17%  Similarity=0.331  Sum_probs=36.5

Q ss_pred             CCHHHHHHhccc-------ccccCCCCeEEEEEcCCCCeeeecCCCCCcCCCCCCCCCc------EEEEecC
Q 028484            1 MSVESVKDKLWR-------KCGTSVNSMSLELYDDTNTKVAALTDNSRPLGFYSPLQGY------RLHVIDL   59 (208)
Q Consensus         1 ~TI~~LK~KLe~-------itGi~p~~m~L~l~~~~g~~~~~l~dd~~~L~~y~i~~g~------~IhV~D~   59 (208)
                      +||.+||++|..       ..-..++++||++   .|+.   | +|+.+|+++.+..|.      ++||+=.
T Consensus        24 ~TV~~lKe~i~~~WP~d~~~~p~s~~~lRLI~---~Gri---L-~d~~tL~~~~~~~~~~~~~~~vmHlvvr   88 (111)
T PF13881_consen   24 TTVADLKERIWAEWPEDWEERPKSPSDLRLIY---AGRI---L-EDNKTLSDCRLPSGETPGGPTVMHLVVR   88 (111)
T ss_dssp             SBHHHHHHHHHHSSSTTSSSTT-SGGGEEEEE---TTEE---E--SSSBTGGGT--TTSETT--EEEEEEE-
T ss_pred             ChHHHHHHHHHHHCccccccCCCChhhEEEEe---CCee---c-CCcCcHHHhCCCCCCCCCCCEEEEEEec
Confidence            589999999962       2355778899998   5875   3 699999999776654      6888854

>KOG3493 consensus Ubiquitin-like protein [Posttranslational modification, protein turnover, chaperones]

Probab=87.24  E-value=0.094  Score=36.97  Aligned_cols=49  Identities=18%  Similarity=0.247  Sum_probs=39.2

Q ss_pred             CCHHHHHHhcccccccCCCCeEEEEEcCCCCeeeecCCCCCcCCCCCCCCCcEEEE
Q 028484            1 MSVESVKDKLWRKCGTSVNSMSLELYDDTNTKVAALTDNSRPLGFYSPLQGYRLHV   56 (208)
Q Consensus         1 ~TI~~LK~KLe~itGi~p~~m~L~l~~~~g~~~~~l~dd~~~L~~y~i~~g~~IhV   56 (208)
                      .||+++|.-|...||+-|.-..|.       ....+..|.-+|.+|-+.+||.+.+
T Consensus        22 DtiGD~KKliaaQtGT~~~kivl~-------k~~~i~kd~I~L~dyeihdg~~lel   70 (73)
T KOG3493|consen   22 DTIGDLKKLIAAQTGTRPEKIVLK-------KWYTIFKDHITLSDYEIHDGMNLEL   70 (73)
T ss_pred             ccccCHHHHHHHhhCCChhHhHHH-------hhhhhhhcccceeeEEeccCccEEE
Confidence            489999999999999999655543       2233568899999999999997654

>PF14732 UAE_UbL: Ubiquitin/SUMO-activating enzyme ubiquitin-like domain; PDB: 1Y8Q_B 1Y8R_E 3KYD_B 3KYC_B

Probab=85.23  E-value=1.4  Score=32.31  Aligned_cols=55  Identities=22%  Similarity=0.248  Sum_probs=32.7

Q ss_pred             CCHHHHHHhc-ccccccCCCCeEEEEEcCCCCeeee------cCCCCCcCCCCCCCCCcEEEEecCC
Q 028484            1 MSVESVKDKL-WRKCGTSVNSMSLELYDDTNTKVAA------LTDNSRPLGFYSPLQGYRLHVIDLD   60 (208)
Q Consensus         1 ~TI~~LK~KL-e~itGi~p~~m~L~l~~~~g~~~~~------l~dd~~~L~~y~i~~g~~IhV~D~~   60 (208)
                      +|+.+|-.++ ....|...-.+.+     ++..+..      -....++|+++++.+|+.|.|.|-+
T Consensus         9 ~TL~~lv~~Vlk~~Lg~~~P~v~~-----~~~ilyd~de~~~~~~l~k~L~elgi~~gs~L~v~D~~   70 (87)
T PF14732_consen    9 MTLGDLVEKVLKKKLGMNEPDVSV-----GGTILYDSDEEEYDDNLPKKLSELGIVNGSILTVDDFD   70 (87)
T ss_dssp             -BHHHHHHHCCCCCS--SSEEEEE-----S-EEEE-SSSSSSTTCTTSBGGGGT--TT-EEEEEETT
T ss_pred             CcHHHHHHHHHHhccCCCCCEEEe-----CCCEEEcCCcchhhhcccCChhHcCCCCCCEEEEEEcC
Confidence            5889999885 5577776644433     2222221      2345789999999999999999964

>PF14836 Ubiquitin_3: Ubiquitin-like domain; PDB: 3JYU_A 4A3O_B 3PPA_A 3T9L_A 4A3P_A 3PV1_A

Probab=80.80  E-value=6.6  Score=29.17  Aligned_cols=58  Identities=9%  Similarity=0.014  Sum_probs=41.2

Q ss_pred             CCHHHHHHhcccccccCCCCeEEEEEcCCCCeeeecCCCCCcCCCCCCCCCcEEEEecCC
Q 028484            1 MSVESVKDKLWRKCGTSVNSMSLELYDDTNTKVAALTDNSRPLGFYSPLQGYRLHVIDLD   60 (208)
Q Consensus         1 ~TI~~LK~KLe~itGi~p~~m~L~l~~~~g~~~~~l~dd~~~L~~y~i~~g~~IhV~D~~   60 (208)
                      .||+.+...+-..+.| +...||.-+...+. ...|.+...+|.+-++.+|..|.+.--|
T Consensus        24 DTI~~v~~~~rklf~i-~~E~RLW~~~~~~~-~e~L~~~~~Tv~da~L~~gQ~vliE~rn   81 (88)
T PF14836_consen   24 DTIGFVEKEMRKLFNI-QEETRLWNKYSENS-YELLNNPEITVEDAGLYDGQVVLIEERN   81 (88)
T ss_dssp             SBHHHHHHHHHHHCT--TS-EEEEEECTTTC-EEEE--TTSBTTTTT--TTEEEEEEE--
T ss_pred             ChHHHHHHHHHHHhCC-CccceehhccCCcc-hhhhCCCCccHHHccCcCCCEEEEEeec
Confidence            4899999999999999 88899998765443 3457788999999999999988776544

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	208
2kj6_A	97	Nmr Solution Structure Of A Tubulin Folding Cofacto		3e-24
1tov_A	98	Structural Genomics Of Caenorhabditis Elegans: Cap-		1e-20
1lpl_A	95	Structural Genomics Of Caenorhabditis Elegans: Cap-		2e-20
4b6m_A	84	Trypansoma Brucei Tubulin Binding Cofactor B Cap-Gl		3e-20
1whg_A	113	Solution Structure Of The Cap-Gly Domain In Mouse T		1e-18
2cp2_A	95	Solution Structure Of The 1st Cap-Gly Domain In Hum		2e-14
2cp5_A	141	Solution Structure Of The 1st Cap-Gly Domain In Hum		4e-14
2cp7_A	84	Solution Structure Of The 1st Cap-Gly Domain In Mou		1e-12
2qk0_A	74	Structural Basis Of Microtubule Plus End Tracking B		2e-12
2e3i_A	86	Crystal Structure Of The Clip-170 Cap-Gly Domain 1		2e-12
3rdv_A	72	Structure Of The Slain2c-Clipcg1 Complex Length = 7		3e-12
2cp3_A	84	Solution Structure Of The 2nd Cap-Gly Domain In Hum		5e-12
2cp6_A	172	Solution Structure Of The 2nd Cap-Gly Domain In Hum		6e-12
1whh_A	102	Solution Structure Of The 2nd Cap-Gly Domain In Mou		8e-12
2e3h_A	90	Crystal Structure Of The Clip-170 Cap-Gly Domain 2		4e-11
2e4h_A	98	Solution Structure Of Cytoskeletal Protein In Compl		5e-11
2coy_A	112	Solution Structure Of The Cap-Gly Domain In Human D		8e-11
2cp0_A	95	Solution Structure Of The 1st Cap-Gly Domain In Hum		2e-10
1t0y_A	122	Solution Structure Of A Ubiquitin-Like Domain From		2e-10
1txq_A	93	Crystal Structure Of The Eb1 C-Terminal Domain Comp		4e-10
2hkn_A	97	Crystal Structure Of The Cap-Gly Domain Of Human Dy		5e-10
2hl3_A	97	Crystal Structure Of The A49m Mutant Cap-Gly Domain		1e-09
3tq7_P	71	Eb1cEB3C HETERODIMER IN COMPLEX WITH THE CAP-Gly Do		2e-09
2cow_A	100	Solution Structure Of The Cap-Gly Domain In Human K		3e-09
2coz_A	122	Solution Structure Of The Cap-Gly Domain In Human C		5e-09
2z0w_A	96	Crystal Structure Of The 2nd Cap-Gly Domain In Huma		1e-08
1whj_A	102	Solution Structure Of The 1st Cap-Gly Domain In Mou		4e-08
1whk_A	91	Solution Structure Of The 3rd Cap-Gly Domain In Mou		3e-06

>pdb|2KJ6|A Chain A, Nmr Solution Structure Of A Tubulin Folding Cofactor B Obtained From Arabidopsis Thaliana: Northeast Structural Genomics Consortium Target Ar3436a Length = 97

Iteration: 1
 Score =  108 bits (269), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 46/61 (75%), Positives = 57/61 (93%)
Query: 1  MSVESVKDKLWRKCGTSVNSMSLELYDDTNTKVAALTDNSRPLGFYSPLQGYRLHVIDLD 60
          MSVE+VK+KLW+KCGTSVNSM+LELYDD+ +KVA L+D+SRPLGF+SP  G+RLH+IDLD
Sbjct: 37 MSVEAVKEKLWKKCGTSVNSMALELYDDSGSKVAVLSDDSRPLGFFSPFDGFRLHIIDLD 96
Query: 61 P 61
          P
Sbjct: 97 P 97

>pdb|1TOV|A Chain A, Structural Genomics Of Caenorhabditis Elegans: Cap-Gly Domain Of F53f4.3 Length = 98

Iteration: 1
 Score = 95.9 bits (237), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 49/90 (54%), Positives = 61/90 (67%), Gaps = 4/90 (4%)
Query: 113 SNNYMEDLCSNITVGDRCEVDPGA---KRGVVKYVGQAESIAPGFWVGIQYDEPLGKHNG 169
           S+   E+   NI VG+RCEV  GA   +RG V YVG A     G WVG++YDEP+GK++G
Sbjct: 4   SDKLNEEAAKNIMVGNRCEVTVGAQMARRGEVAYVG-ATKFKEGVWVGVKYDEPVGKNDG 62
Query: 170 IVKGVRYFECPPLHGAMVRPDKVKVGDYPE 199
            V GVRYF+C P +G  VRP  VKVGD+PE
Sbjct: 63  SVAGVRYFDCDPKYGGFVRPVDVKVGDFPE 92

>pdb|1LPL|A Chain A, Structural Genomics Of Caenorhabditis Elegans: Cap-Gly Domain Of F53f4.3 Length = 95

Iteration: 1
 Score = 95.5 bits (236), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 49/90 (54%), Positives = 61/90 (67%), Gaps = 4/90 (4%)
Query: 113 SNNYMEDLCSNITVGDRCEVDPGA---KRGVVKYVGQAESIAPGFWVGIQYDEPLGKHNG 169
           S+   E+   NI VG+RCEV  GA   +RG V YVG A     G WVG++YDEP+GK++G
Sbjct: 1   SDKLNEEAAKNIMVGNRCEVTVGAQMARRGEVAYVG-ATKFKEGVWVGVKYDEPVGKNDG 59
Query: 170 IVKGVRYFECPPLHGAMVRPDKVKVGDYPE 199
            V GVRYF+C P +G  VRP  VKVGD+PE
Sbjct: 60  SVAGVRYFDCDPKYGGFVRPVDVKVGDFPE 89

>pdb|4B6M|A Chain A, Trypansoma Brucei Tubulin Binding Cofactor B Cap-Gly Domain Length = 84

Iteration: 1
 Score = 95.1 bits (235), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 40/76 (52%), Positives = 57/76 (75%)
Query: 123 NITVGDRCEVDPGAKRGVVKYVGQAESIAPGFWVGIQYDEPLGKHNGIVKGVRYFECPPL 182
            I VGDRC   PG + G V++VG+  S+ PG+WVG+++DEP+GK +G VKG R F+C P 
Sbjct: 5   TIHVGDRCLCRPGDRLGSVRFVGRVASLKPGYWVGVEFDEPVGKGDGTVKGTRVFQCQPN 64
Query: 183 HGAMVRPDKVKVGDYP 198
           +G  +RPD+V+VGD+P
Sbjct: 65  YGGFLRPDQVEVGDFP 80

>pdb|1WHG|A Chain A, Solution Structure Of The Cap-Gly Domain In Mouse Tubulin Specific Chaperone B Length = 113

Iteration: 1
 Score = 89.4 bits (220), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 47/102 (46%), Positives = 63/102 (61%), Gaps = 6/102 (5%)
Query: 98  EKVLSQNPSAVENKLSNNYMEDLCSNITVGDRCEV---DPGAKRGVVKYVGQAESIAPGF 154
           E++ +Q  +    +LS    +   S I+VG RCEV   D   +RG V YVG  +   PG+
Sbjct: 9   EELRAQQEAEAAQRLSEEKAQ--ASAISVGSRCEVRAPDHSLRRGTVMYVGLTD-FKPGY 65
Query: 155 WVGIQYDEPLGKHNGIVKGVRYFECPPLHGAMVRPDKVKVGD 196
           WVG++YDEPLGK++G V G RYFEC   +GA V+P  V VGD
Sbjct: 66  WVGVRYDEPLGKNDGSVNGKRYFECQAKYGAFVKPSAVTVGD 107

>pdb|2CP2|A Chain A, Solution Structure Of The 1st Cap-Gly Domain In Human Clip- 115CYLN2 Length = 95

Iteration: 1
 Score = 75.1 bits (183), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 36/75 (48%), Positives = 50/75 (66%), Gaps = 2/75 (2%)
Query: 118 EDLCSNITVGDRCEVDPGAKRGVVKYVGQAESIAPGFWVGIQYDEPLGKHNGIVKGVRYF 177
           +D   +  VG+R  V+ G K GVV+Y+G+ +  APG W G+  D+P+GK++G V GVRYF
Sbjct: 13  DDFLGDFVVGERVWVN-GVKPGVVQYLGETQ-FAPGQWAGVVLDDPVGKNDGAVGGVRYF 70
Query: 178 ECPPLHGAMVRPDKV 192
           ECP L G   RP K+
Sbjct: 71  ECPALQGIFTRPSKL 85

>pdb|2CP5|A Chain A, Solution Structure Of The 1st Cap-Gly Domain In Human Clip- 170RESTIN Length = 141

Iteration: 1
 Score = 74.3 bits (181), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 35/80 (43%), Positives = 51/80 (63%), Gaps = 2/80 (2%)
Query: 113 SNNYMEDLCSNITVGDRCEVDPGAKRGVVKYVGQAESIAPGFWVGIQYDEPLGKHNGIVK 172
           S+   E+   +  VG+R  V+ G K G ++++G+ +  APG W GI  DEP+GK++G V 
Sbjct: 54  SSETQEEFVDDFRVGERVWVN-GNKPGFIQFLGETQ-FAPGQWAGIVLDEPIGKNDGSVA 111
Query: 173 GVRYFECPPLHGAMVRPDKV 192
           GVRYF+C PL G   RP K+
Sbjct: 112 GVRYFQCEPLKGIFTRPSKL 131

>pdb|2CP7|A Chain A, Solution Structure Of The 1st Cap-Gly Domain In Mouse Clip- 170RESTIN Length = 84

Iteration: 1
 Score = 69.7 bits (169), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 34/71 (47%), Positives = 47/71 (66%), Gaps = 2/71 (2%)
Query: 122 SNITVGDRCEVDPGAKRGVVKYVGQAESIAPGFWVGIQYDEPLGKHNGIVKGVRYFECPP 181
           S   VG+R  V+ G K G ++++G+ +  APG W GI  DEP+GK++G V GVRYF+C P
Sbjct: 6   SGFRVGERVWVN-GNKPGFIQFLGETQ-FAPGQWAGIVLDEPIGKNDGSVAGVRYFQCEP 63
Query: 182 LHGAMVRPDKV 192
           L G   RP K+
Sbjct: 64  LKGIFTRPSKL 74

>pdb|2QK0|A Chain A, Structural Basis Of Microtubule Plus End Tracking By Xmap215, Clip-170 And Eb1 Length = 74

Iteration: 1
 Score = 68.9 bits (167), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 34/70 (48%), Positives = 47/70 (67%), Gaps = 2/70 (2%)
Query: 122 SNITVGDRCEVDPGAKRGVVKYVGQAESIAPGFWVGIQYDEPLGKHNGIVKGVRYFECPP 181
           S+  VG+R  V+ G K G ++++G+ +  APG W GI  DEP+GK++G V GVRYF+C P
Sbjct: 2   SDFRVGERVWVN-GNKPGFIQFLGETQ-FAPGQWAGIVLDEPIGKNDGSVAGVRYFQCEP 59
Query: 182 LHGAMVRPDK 191
           L G   RP K
Sbjct: 60  LKGIFTRPSK 69

>pdb|2E3I|A Chain A, Crystal Structure Of The Clip-170 Cap-Gly Domain 1 Length = 86

Iteration: 1
 Score = 68.9 bits (167), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 33/70 (47%), Positives = 47/70 (67%), Gaps = 2/70 (2%)
Query: 123 NITVGDRCEVDPGAKRGVVKYVGQAESIAPGFWVGIQYDEPLGKHNGIVKGVRYFECPPL 182
           +  VG+R  V+ G K G ++++G+ +  APG W GI  DEP+GK++G V GVRYF+C PL
Sbjct: 2   DFRVGERVWVN-GNKPGFIQFLGETQ-FAPGQWAGIVLDEPIGKNDGSVAGVRYFQCEPL 59
Query: 183 HGAMVRPDKV 192
            G   RP K+
Sbjct: 60  KGIFTRPSKL 69

>pdb|3RDV|A Chain A, Structure Of The Slain2c-Clipcg1 Complex Length = 72

Iteration: 1
 Score = 68.2 bits (165), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 33/70 (47%), Positives = 47/70 (67%), Gaps = 2/70 (2%)
Query: 123 NITVGDRCEVDPGAKRGVVKYVGQAESIAPGFWVGIQYDEPLGKHNGIVKGVRYFECPPL 182
           +  VG+R  V+ G K G ++++G+ +  APG W GI  DEP+GK++G V GVRYF+C PL
Sbjct: 2   DFRVGERVWVN-GNKPGFIQFLGETQ-FAPGQWAGIVLDEPIGKNDGSVAGVRYFQCEPL 59
Query: 183 HGAMVRPDKV 192
            G   RP K+
Sbjct: 60  KGIFTRPSKL 69

>pdb|2CP3|A Chain A, Solution Structure Of The 2nd Cap-Gly Domain In Human Clip- 115CYLN2 Length = 84

Iteration: 1
 Score = 67.4 bits (163), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 37/79 (46%), Positives = 49/79 (62%), Gaps = 3/79 (3%)
Query: 122 SNITVGDRCEVDPGAKRGVVKYVGQAESIAPGFWVGIQYDEPLGKHNGIVKGVRYFECPP 181
           S + +GDR  V  G K GVV+YVG+ +  A G W G++ DEPLGK++G V G RYF+CPP
Sbjct: 6   SGLRLGDRVLVG-GTKTGVVRYVGETD-FAKGEWCGVELDEPLGKNDGAVAGTRYFQCPP 63
Query: 182 LHGAMVRPDKV-KVGDYPE 199
             G      KV ++G  P 
Sbjct: 64  KFGLFAPIHKVIRIGSGPS 82

>pdb|2CP6|A Chain A, Solution Structure Of The 2nd Cap-Gly Domain In Human Clip- 170RESTIN Length = 172

Iteration: 1
 Score = 67.4 bits (163), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 33/79 (41%), Positives = 47/79 (59%), Gaps = 2/79 (2%)
Query: 124 ITVGDRCEVDPGAKRGVVKYVGQAESIAPGFWVGIQYDEPLGKHNGIVKGVRYFECPPLH 183
           + +GDR  V  G K GVV+++G+ +  A G W G++ DEPLGK++G V G RYF+C P +
Sbjct: 39  LKIGDRVLVG-GTKAGVVRFLGETD-FAKGEWCGVELDEPLGKNDGAVAGTRYFQCQPKY 96
Query: 184 GAMVRPDKVKVGDYPERDP 202
           G      KV    +P   P
Sbjct: 97  GLFAPVHKVTKIGFPSTTP 115

>pdb|1WHH|A Chain A, Solution Structure Of The 2nd Cap-Gly Domain In Mouse Clip170-Related 59kda Protein Clipr-59 Length = 102

Iteration: 1
 Score = 67.0 bits (162), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 33/74 (44%), Positives = 48/74 (64%), Gaps = 3/74 (4%)
Query: 126 VGDRCEVDPGAKRGVVKYVGQAESIAPGFWVGIQYDEPLGKHNGIVKGVRYFECPPLHGA 185
           VGD+  V  G K+G+V++ G+ +  APG+W GI+ D+P GKH+G V GVRYF C P HG 
Sbjct: 28  VGDQVLV-AGQKQGIVRFYGKTD-FAPGYWYGIELDQPTGKHDGSVFGVRYFTCAPRHGV 85
Query: 186 MVRPDKV-KVGDYP 198
                ++ ++G  P
Sbjct: 86  FAPASRIQRIGSGP 99

>pdb|2E3H|A Chain A, Crystal Structure Of The Clip-170 Cap-Gly Domain 2 Length = 90

Iteration: 1
 Score = 64.3 bits (155), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 33/79 (41%), Positives = 47/79 (59%), Gaps = 2/79 (2%)
Query: 124 ITVGDRCEVDPGAKRGVVKYVGQAESIAPGFWVGIQYDEPLGKHNGIVKGVRYFECPPLH 183
           + +GDR  V  G K GVV+++G+ +  A G W G++ DEPLGK++G V G RYF+C P +
Sbjct: 2   LKIGDRVLVG-GTKAGVVRFLGETD-FAKGEWCGVELDEPLGKNDGAVAGTRYFQCQPKY 59
Query: 184 GAMVRPDKVKVGDYPERDP 202
           G      KV    +P   P
Sbjct: 60  GLFAPVHKVTKIGFPSTTP 78

>pdb|2E4H|A Chain A, Solution Structure Of Cytoskeletal Protein In Complex With Tubulin Tail Length = 98

Iteration: 1
 Score = 64.3 bits (155), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 33/79 (41%), Positives = 47/79 (59%), Gaps = 2/79 (2%)
Query: 124 ITVGDRCEVDPGAKRGVVKYVGQAESIAPGFWVGIQYDEPLGKHNGIVKGVRYFECPPLH 183
           + +GDR  V  G K GVV+++G+ +  A G W G++ DEPLGK++G V G RYF+C P +
Sbjct: 10  LKIGDRVLVG-GTKAGVVRFLGETD-FAKGEWCGVELDEPLGKNDGAVAGTRYFQCQPKY 67
Query: 184 GAMVRPDKVKVGDYPERDP 202
           G      KV    +P   P
Sbjct: 68  GLFAPVHKVTKIGFPSTTP 86

>pdb|2COY|A Chain A, Solution Structure Of The Cap-Gly Domain In Human Dynactin 1 Length = 112

Iteration: 1
 Score = 63.5 bits (153), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 39/98 (39%), Positives = 49/98 (50%), Gaps = 6/98 (6%)
Query: 97  KEKVLSQNPSAVENKLSNNYMEDLCSNITVGDRCEVDPGAKRGVVKYVGQAESIAPGFWV 156
           K  V S+ PS      S    E     + VG R EV     RG V YVG A   A G WV
Sbjct: 12  KRHVYSRTPSG-----SRMSAEASARPLRVGSRVEVIGKGHRGTVAYVG-ATLFATGKWV 65
Query: 157 GIQYDEPLGKHNGIVKGVRYFECPPLHGAMVRPDKVKV 194
           G+  DE  GK++G V+G +YF C   HG  VR  +++V
Sbjct: 66  GVILDEAKGKNDGTVQGRKYFTCDEGHGIFVRQSQIQV 103

>pdb|2CP0|A Chain A, Solution Structure Of The 1st Cap-Gly Domain In Human Clip- 170-Related Protein Clipr59 Length = 95

Iteration: 1
 Score = 62.0 bits (149), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 31/70 (44%), Positives = 42/70 (60%), Gaps = 2/70 (2%)
Query: 123 NITVGDRCEVDPGAKRGVVKYVGQAESIAPGFWVGIQYDEPLGKHNGIVKGVRYFECPPL 182
            + +GDR  +D G K G +++ G  E  A G WVG++ DEP GK++G V GVRYF CPP 
Sbjct: 16  GLRLGDRVLLD-GQKTGTLRFCGTTE-FASGQWVGVELDEPEGKNDGSVGGVRYFICPPK 73
Query: 183 HGAMVRPDKV 192
            G      K+
Sbjct: 74  QGLFASVSKI 83

>pdb|1T0Y|A Chain A, Solution Structure Of A Ubiquitin-Like Domain From Tubulin- Binding Cofactor B Length = 122

Iteration: 1
 Score = 62.0 bits (149), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 37/100 (37%), Positives = 57/100 (57%), Gaps = 6/100 (6%)
Query: 1   MSVESVKDKLWRKCGTSVNSMSLELYDDTNTKVAALTDNSRPLGFYSPLQGYRLHVIDLD 60
           MS+  +K KL    GT+V+SM ++L+D  +     LTD ++ L       GYR+H +D  
Sbjct: 28  MSLNDLKKKLELVVGTTVDSMRIQLFDGDDQLKGELTDGAKSLKDLGVRDGYRIHAVD-- 85
Query: 61  PSSVTSGGW-LEDTSLVEKYTISEEEYSKRDGTFRKFKEK 99
              VT G    +D S+VEKY +S++ Y KR  + R +K+K
Sbjct: 86  ---VTGGNEDFKDESMVEKYEMSDDTYGKRTDSVRAWKKK 122

>pdb|1TXQ|A Chain A, Crystal Structure Of The Eb1 C-Terminal Domain Complexed With The Cap-Gly Domain Of P150glued Length = 93

Iteration: 1
 Score = 61.2 bits (147), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 32/71 (45%), Positives = 41/71 (57%), Gaps = 1/71 (1%)
Query: 124 ITVGDRCEVDPGAKRGVVKYVGQAESIAPGFWVGIQYDEPLGKHNGIVKGVRYFECPPLH 183
           + VG R EV     RG V YVG A   A G WVG+  DE  GK++G V+G +YF C   H
Sbjct: 13  LRVGSRVEVIGKGHRGTVAYVG-ATLFATGKWVGVILDEAKGKNDGTVQGRKYFTCDEGH 71
Query: 184 GAMVRPDKVKV 194
           G  VR  +++V
Sbjct: 72  GIFVRQSQIQV 82

>pdb|2HKN|A Chain A, Crystal Structure Of The Cap-Gly Domain Of Human Dynactin-1 (P150- Glued) Length = 97

Iteration: 1
 Score = 60.8 bits (146), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 32/71 (45%), Positives = 41/71 (57%), Gaps = 1/71 (1%)
Query: 124 ITVGDRCEVDPGAKRGVVKYVGQAESIAPGFWVGIQYDEPLGKHNGIVKGVRYFECPPLH 183
           + VG R EV     RG V YVG A   A G WVG+  DE  GK++G V+G +YF C   H
Sbjct: 13  LRVGSRVEVIGKGHRGTVAYVG-ATLFATGKWVGVILDEAKGKNDGTVQGRKYFTCDEGH 71
Query: 184 GAMVRPDKVKV 194
           G  VR  +++V
Sbjct: 72  GIFVRQSQIQV 82

>pdb|2HL3|A Chain A, Crystal Structure Of The A49m Mutant Cap-Gly Domain Of Human Dynactin-1 (P150-Glued) In Complex With Human Eb1 C- Terminal Hexapeptide Length = 97

Iteration: 1
 Score = 59.3 bits (142), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 31/71 (43%), Positives = 40/71 (56%), Gaps = 1/71 (1%)
Query: 124 ITVGDRCEVDPGAKRGVVKYVGQAESIAPGFWVGIQYDEPLGKHNGIVKGVRYFECPPLH 183
           + VG R EV     RG V YVG     A G WVG+  DE  GK++G V+G +YF C   H
Sbjct: 13  LRVGSRVEVIGKGHRGTVAYVGMT-LFATGKWVGVILDEAKGKNDGTVQGRKYFTCDEGH 71
Query: 184 GAMVRPDKVKV 194
           G  VR  +++V
Sbjct: 72  GIFVRQSQIQV 82

>pdb|3TQ7|P Chain P, Eb1cEB3C HETERODIMER IN COMPLEX WITH THE CAP-Gly Domain Of P150glued Length = 71

Iteration: 1
 Score = 58.9 bits (141), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 31/71 (43%), Positives = 40/71 (56%), Gaps = 1/71 (1%)
Query: 124 ITVGDRCEVDPGAKRGVVKYVGQAESIAPGFWVGIQYDEPLGKHNGIVKGVRYFECPPLH 183
           + VG R EV     RG V YVG     A G WVG+  DE  GK++G V+G +YF C   H
Sbjct: 1   LRVGSRVEVIGKGHRGTVAYVGMT-LFATGKWVGVILDEAKGKNDGTVQGRKYFTCDEGH 59
Query: 184 GAMVRPDKVKV 194
           G  VR  +++V
Sbjct: 60  GIFVRQSQIQV 70

>pdb|2COW|A Chain A, Solution Structure Of The Cap-Gly Domain In Human Kinesin- Like Protein Kif13b Length = 100

Iteration: 1
 Score = 58.5 bits (140), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 27/57 (47%), Positives = 39/57 (68%), Gaps = 1/57 (1%)
Query: 137 KRGVVKYVGQAESIAPGFWVGIQYDEPLGKHNGIVKGVRYFECPPLHGAMVRPDKVK 193
           K GVV+YVG A+    G WVG++ D P GK++G + G +YF C P +G +VRP +V+
Sbjct: 36  KTGVVRYVGPAD-FQEGTWVGVELDLPSGKNDGSIGGKQYFRCNPGYGLLVRPSRVR 91

>pdb|2COZ|A Chain A, Solution Structure Of The Cap-Gly Domain In Human Centrosome-Associated Protein Cap350 Length = 122

Iteration: 1
 Score = 57.4 bits (137), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 30/95 (31%), Positives = 52/95 (54%), Gaps = 7/95 (7%)
Query: 98  EKVLSQNPSAVENKLSNNYMEDLCSNITVGDRCEVDPGAKRGVVKYVGQAESIAPGFWVG 157
           E+ ++++PS     L++    D   +  +GDR  +    + G++++ G+  S A GFW G
Sbjct: 11  EQQVTESPS-----LASVPTADELFDFHIGDRVLIG-NVQPGILRFKGET-SFAKGFWAG 63
Query: 158 IQYDEPLGKHNGIVKGVRYFECPPLHGAMVRPDKV 192
           ++ D+P G +NG   G+ YFEC   HG    P K+
Sbjct: 64  VELDKPEGNNNGTYDGIAYFECKEKHGIFAPPQKI 98

>pdb|2Z0W|A Chain A, Crystal Structure Of The 2nd Cap-Gly Domain In Human Restin- Like Protein 2 Reveals A Swapped-Dimer Length = 96

Iteration: 1
 Score = 56.6 bits (135), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 26/70 (37%), Positives = 44/70 (62%), Gaps = 2/70 (2%)
Query: 124 ITVGDRCEVDPGAKRGVVKYVGQAESIAPGFWVGIQYDEPLGKHNGIVKGVRYFECPPLH 183
           + +G+R  V  G + G +++ G   + APG+W GI+ ++P GK++G V GV+YF C P +
Sbjct: 11  LRLGERVLVV-GQRLGTIRFFG-TTNFAPGYWYGIELEKPHGKNDGSVGGVQYFSCSPRY 68
Query: 184 GAMVRPDKVK 193
           G    P +V+
Sbjct: 69  GIFAPPSRVQ 78

>pdb|1WHJ|A Chain A, Solution Structure Of The 1st Cap-Gly Domain In Mouse 1700024k14rik Hypothetical Protein Length = 102

Iteration: 1
 Score = 54.7 bits (130), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 29/70 (41%), Positives = 40/70 (57%), Gaps = 2/70 (2%)
Query: 123 NITVGDRCEVDPGAKRGVVKYVGQAESIAPGFWVGIQYDEPLGKHNGIVKGVRYFECPPL 182
            + +GDR  V  G K G +++ G  E  A G W GI+ DEP GK+NG V  V+YF+C P 
Sbjct: 24  GLKLGDRV-VIAGQKVGTLRFCGTTE-FASGQWAGIELDEPEGKNNGSVGRVQYFKCAPK 81
Query: 183 HGAMVRPDKV 192
           +G      K+
Sbjct: 82  YGIFAPLSKI 91

>pdb|1WHK|A Chain A, Solution Structure Of The 3rd Cap-Gly Domain In Mouse 1700024k14rik Hypothetical Protein Length = 91

Iteration: 1
 Score = 48.5 bits (114), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 22/52 (42%), Positives = 32/52 (61%), Gaps = 1/52 (1%)
Query: 141 VKYVGQAESIAPGFWVGIQYDEPLGKHNGIVKGVRYFECPPLHGAMVRPDKV 192
           V+YVG  +  A G W+G++     GK++G V   RYF C P +G +VRP +V
Sbjct: 30  VRYVGPTD-FASGIWLGLELRSAKGKNDGAVGDKRYFTCKPNYGVLVRPSRV 80

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	208
1lpl_A	95	Hypothetical 25.4 kDa protein F53F4.3 in chromosom	4e-37
2e3h_A	90	Restin; CAP-Gly, cytoplasmic linker, tubulin bindi	2e-34
2cow_A	100	Kinesin-like protein KIF13B; microtubule binding,	3e-33
2cp6_A	172	Restin; microtubule binding, cytoskeleton associat	6e-33
1txq_A	93	Dynactin 1; protein complex, structural protein/pr	6e-33
2coy_A	112	Dynactin-1; microtubule binding, cytoskeleton asso	6e-33
2e3i_A	86	Restin; CAP-Gly, cytoplasmic linker, tubulin bindi	1e-32
2cp3_A	84	CLIP-115, KIAA0291; microtubule binding, cytoskele	1e-32
2cp2_A	95	CLIP-115, KIAA0291; microtubule binding, cytoskele	2e-32
2coz_A	122	CAP350, centrosome-associated protein 350; microtu	3e-32
1whh_A	102	Clipr-59; microtubule binding, trans-golgi network	8e-32
1whg_A	113	Tubulin specific chaperone B; microtubule binding,	3e-31
1whk_A	91	1700024K14RIK, riken cDNA 1700024K14; structural g	3e-31
2cp5_A	141	Restin; microtubule binding, cytoskeleton associat	7e-31
2cp0_A	95	Clipr-59 protein, clipr59; microtubule binding, cy	9e-31
3rdv_A	72	CAP-Gly domain-containing linker protein 1; cytosk	1e-30
2z0w_A	96	CAP-Gly domain-containing linker protein 4; altern	1e-30
1t0y_A	122	Tubulin folding cofactor B; ubiquitin-like, cytosk	3e-30
1whj_A	102	1700024K14RIK, riken cDNA 1700024K14; structural g	3e-30
1whl_A	95	Cylindromatosis tumor suppressor CYLD; deubiquitin	3e-26
1ixd_A	104	Cylindromatosis tumour-suppressor CYLD; structural	6e-26
1v6e_A	95	Cytoskeleton-associated protein 1; tubulin-specifi	5e-22
2kj6_A	97	Tubulin folding cofactor B; methods development, N	1e-19
2kjr_A	95	CG11242; UBL, ubiquitin, ubiquitin-like, structura	8e-17
1whm_A	92	Cylindromatosis tumor suppressor CYLD; deubiquitin	2e-10

>1lpl_A Hypothetical 25.4 kDa protein F53F4.3 in chromosome V; structural genomics, CAP-Gly domain, cytoskeleton, tubulin, PSI; 1.77A {Caenorhabditis elegans} SCOP: b.34.10.1 PDB: 1tov_A Length = 95

 Score =  124 bits (312), Expect = 4e-37
 Identities = 49/95 (51%), Positives = 62/95 (65%), Gaps = 4/95 (4%)

Query: 113 SNNYMEDLCSNITVGDRCEVDPGA---KRGVVKYVGQAESIAPGFWVGIQYDEPLGKHNG 169
           S+   E+   NI VG+RCEV  GA   +RG V YVG  +    G WVG++YDEP+GK++G
Sbjct: 1   SDKLNEEAAKNIMVGNRCEVTVGAQMARRGEVAYVGATKF-KEGVWVGVKYDEPVGKNDG 59

Query: 170 IVKGVRYFECPPLHGAMVRPDKVKVGDYPERDPFE 204
            V GVRYF+C P +G  VRP  VKVGD+PE    E
Sbjct: 60  SVAGVRYFDCDPKYGGFVRPVDVKVGDFPELSIDE 94

>2e3h_A Restin; CAP-Gly, cytoplasmic linker, tubulin binding, structural protein; 1.45A {Homo sapiens} SCOP: b.34.10.1 PDB: 2e4h_A Length = 90

 Score =  117 bits (294), Expect = 2e-34
 Identities = 33/79 (41%), Positives = 47/79 (59%), Gaps = 2/79 (2%)

Query: 124 ITVGDRCEVDPGAKRGVVKYVGQAESIAPGFWVGIQYDEPLGKHNGIVKGVRYFECPPLH 183
           + +GDR  V  G K GVV+++G+ +  A G W G++ DEPLGK++G V G RYF+C P +
Sbjct: 2   LKIGDRVLV-GGTKAGVVRFLGETD-FAKGEWCGVELDEPLGKNDGAVAGTRYFQCQPKY 59

Query: 184 GAMVRPDKVKVGDYPERDP 202
           G      KV    +P   P
Sbjct: 60  GLFAPVHKVTKIGFPSTTP 78

>2cow_A Kinesin-like protein KIF13B; microtubule binding, cytoskeleton associated protein, KIAA0639, kinesin-like protein gakin, structural genomics; NMR {Homo sapiens} SCOP: b.34.10.1 Length = 100

 Score =  114 bits (286), Expect = 3e-33
 Identities = 31/97 (31%), Positives = 49/97 (50%), Gaps = 2/97 (2%)

Query: 102 SQNPSAVENKLSNNYMEDLCSNITVGDRCEVDPGAKRGVVKYVGQAESIAPGFWVGIQYD 161
           S   S       +   +++   +  G+   V    K GVV+YVG A+    G WVG++ D
Sbjct: 2   SSGSSGQALASDSEEADEVPEWLREGEFVTV-GAHKTGVVRYVGPADF-QEGTWVGVELD 59

Query: 162 EPLGKHNGIVKGVRYFECPPLHGAMVRPDKVKVGDYP 198
            P GK++G + G +YF C P +G +VRP +V+     
Sbjct: 60  LPSGKNDGSIGGKQYFRCNPGYGLLVRPSRVRRATSG 96

>2cp6_A Restin; microtubule binding, cytoskeleton associated protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.34.10.1 Length = 172

 Score =  115 bits (289), Expect = 6e-33
 Identities = 34/103 (33%), Positives = 53/103 (51%), Gaps = 2/103 (1%)

Query: 102 SQNPSAVENKLSNNYMEDLCSNITVGDRCEVDPGAKRGVVKYVGQAESIAPGFWVGIQYD 161
                ++ N      ++     + +GDR  V  G K GVV+++G+ +  A G W G++ D
Sbjct: 17  KTASESISNLSEAGSIKKGERELKIGDRVLV-GGTKAGVVRFLGETD-FAKGEWCGVELD 74

Query: 162 EPLGKHNGIVKGVRYFECPPLHGAMVRPDKVKVGDYPERDPFE 204
           EPLGK++G V G RYF+C P +G      KV    +P   P +
Sbjct: 75  EPLGKNDGAVAGTRYFQCQPKYGLFAPVHKVTKIGFPSTTPAK 117

>1txq_A Dynactin 1; protein complex, structural protein/protein binding complex; 1.80A {Homo sapiens} SCOP: b.34.10.1 PDB: 2hqh_A 2hkq_B 2hkn_A 2pzo_A 3e2u_A 2hl5_C 2hl3_A 3tq7_P Length = 93

 Score =  113 bits (284), Expect = 6e-33
 Identities = 33/86 (38%), Positives = 43/86 (50%), Gaps = 1/86 (1%)

Query: 113 SNNYMEDLCSNITVGDRCEVDPGAKRGVVKYVGQAESIAPGFWVGIQYDEPLGKHNGIVK 172
           S    E     + VG R EV     RG V YVG     A G WVG+  DE  GK++G V+
Sbjct: 2   SRMSAEASARPLRVGSRVEVIGKGHRGTVAYVGATLF-ATGKWVGVILDEAKGKNDGTVQ 60

Query: 173 GVRYFECPPLHGAMVRPDKVKVGDYP 198
           G +YF C   HG  VR  +++V +  
Sbjct: 61  GRKYFTCDEGHGIFVRQSQIQVFEDG 86

>2coy_A Dynactin-1; microtubule binding, cytoskeleton associated protein, P150- glued, DAP-150, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.34.10.1 Length = 112

 Score =  113 bits (285), Expect = 6e-33
 Identities = 33/95 (34%), Positives = 46/95 (48%), Gaps = 1/95 (1%)

Query: 102 SQNPSAVENKLSNNYMEDLCSNITVGDRCEVDPGAKRGVVKYVGQAESIAPGFWVGIQYD 161
            ++  +     S    E     + VG R EV     RG V YVG     A G WVG+  D
Sbjct: 12  KRHVYSRTPSGSRMSAEASARPLRVGSRVEVIGKGHRGTVAYVGATLF-ATGKWVGVILD 70

Query: 162 EPLGKHNGIVKGVRYFECPPLHGAMVRPDKVKVGD 196
           E  GK++G V+G +YF C   HG  VR  +++V +
Sbjct: 71  EAKGKNDGTVQGRKYFTCDEGHGIFVRQSQIQVFE 105

>2e3i_A Restin; CAP-Gly, cytoplasmic linker, tubulin binding, structural protein; 2.00A {Homo sapiens} SCOP: b.34.10.1 Length = 86

 Score =  112 bits (281), Expect = 1e-32
 Identities = 34/80 (42%), Positives = 48/80 (60%), Gaps = 2/80 (2%)

Query: 123 NITVGDRCEVDPGAKRGVVKYVGQAESIAPGFWVGIQYDEPLGKHNGIVKGVRYFECPPL 182
           +  VG+R  V  G K G ++++G+ +  APG W GI  DEP+GK++G V GVRYF+C PL
Sbjct: 2   DFRVGERVWV-NGNKPGFIQFLGETQF-APGQWAGIVLDEPIGKNDGSVAGVRYFQCEPL 59

Query: 183 HGAMVRPDKVKVGDYPERDP 202
            G   RP K+      E + 
Sbjct: 60  KGIFTRPSKLTRKVQAEDEA 79

>2cp3_A CLIP-115, KIAA0291; microtubule binding, cytoskeleton associated protein, CYLN2, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.34.10.1 Length = 84

 Score =  111 bits (280), Expect = 1e-32
 Identities = 37/78 (47%), Positives = 49/78 (62%), Gaps = 3/78 (3%)

Query: 122 SNITVGDRCEVDPGAKRGVVKYVGQAESIAPGFWVGIQYDEPLGKHNGIVKGVRYFECPP 181
           S + +GDR  V  G K GVV+YVG+ +  A G W G++ DEPLGK++G V G RYF+CPP
Sbjct: 6   SGLRLGDRVLV-GGTKTGVVRYVGETD-FAKGEWCGVELDEPLGKNDGAVAGTRYFQCPP 63

Query: 182 LHGAMVRPDKV-KVGDYP 198
             G      KV ++G  P
Sbjct: 64  KFGLFAPIHKVIRIGSGP 81

>2cp2_A CLIP-115, KIAA0291; microtubule binding, cytoskeleton associated protein, CYLN2, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.34.10.1 PDB: 2cp7_A Length = 95

 Score =  111 bits (280), Expect = 2e-32
 Identities = 36/81 (44%), Positives = 49/81 (60%), Gaps = 2/81 (2%)

Query: 118 EDLCSNITVGDRCEVDPGAKRGVVKYVGQAESIAPGFWVGIQYDEPLGKHNGIVKGVRYF 177
           +D   +  VG+R  V  G K GVV+Y+G+ +  APG W G+  D+P+GK++G V GVRYF
Sbjct: 13  DDFLGDFVVGERVWV-NGVKPGVVQYLGETQF-APGQWAGVVLDDPVGKNDGAVGGVRYF 70

Query: 178 ECPPLHGAMVRPDKVKVGDYP 198
           ECP L G   RP K+      
Sbjct: 71  ECPALQGIFTRPSKLTRQPSG 91

>2coz_A CAP350, centrosome-associated protein 350; microtubule binding, cytoskeleton associated protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.34.10.1 Length = 122

 Score =  112 bits (281), Expect = 3e-32
 Identities = 30/111 (27%), Positives = 54/111 (48%), Gaps = 7/111 (6%)

Query: 97  KEKVLSQNPSAVENKLSNNYMEDLCSNITVGDRCEVDPGAKRGVVKYVGQAESIAPGFWV 156
            E+ ++++PS      ++    D   +  +GDR  +    + G++++ G+    A GFW 
Sbjct: 10  HEQQVTESPSL-----ASVPTADELFDFHIGDRVLI-GNVQPGILRFKGETSF-AKGFWA 62

Query: 157 GIQYDEPLGKHNGIVKGVRYFECPPLHGAMVRPDKVKVGDYPERDPFEEDE 207
           G++ D+P G +NG   G+ YFEC   HG    P K+        D  + +E
Sbjct: 63  GVELDKPEGNNNGTYDGIAYFECKEKHGIFAPPQKISHIPENFDDYVDINE 113

>1whh_A Clipr-59; microtubule binding, trans-golgi network, structural genomics, riken structural genomics/proteomics initiative, RSGI, structural protein; NMR {Mus musculus} SCOP: b.34.10.1 Length = 102

 Score =  110 bits (277), Expect = 8e-32
 Identities = 33/78 (42%), Positives = 49/78 (62%), Gaps = 3/78 (3%)

Query: 122 SNITVGDRCEVDPGAKRGVVKYVGQAESIAPGFWVGIQYDEPLGKHNGIVKGVRYFECPP 181
           +   VGD+  V  G K+G+V++ G+ +  APG+W GI+ D+P GKH+G V GVRYF C P
Sbjct: 24  AKAEVGDQVLV-AGQKQGIVRFYGKTD-FAPGYWYGIELDQPTGKHDGSVFGVRYFTCAP 81

Query: 182 LHGAMVRPDKV-KVGDYP 198
            HG      ++ ++G  P
Sbjct: 82  RHGVFAPASRIQRIGSGP 99

>1whg_A Tubulin specific chaperone B; microtubule binding, cytoskeleton associated protein, ckapi, structural genomics; NMR {Mus musculus} SCOP: b.34.10.1 Length = 113

 Score =  109 bits (274), Expect = 3e-31
 Identities = 47/105 (44%), Positives = 63/105 (60%), Gaps = 6/105 (5%)

Query: 97  KEKVLSQNPSAVENKLSNNYMEDLCSNITVGDRCEV---DPGAKRGVVKYVGQAESIAPG 153
            E++ +Q  +    +LS    +   S I+VG RCEV   D   +RG V YVG  +   PG
Sbjct: 8   NEELRAQQEAEAAQRLSEE--KAQASAISVGSRCEVRAPDHSLRRGTVMYVGLTD-FKPG 64

Query: 154 FWVGIQYDEPLGKHNGIVKGVRYFECPPLHGAMVRPDKVKVGDYP 198
           +WVG++YDEPLGK++G V G RYFEC   +GA V+P  V VGD  
Sbjct: 65  YWVGVRYDEPLGKNDGSVNGKRYFECQAKYGAFVKPSAVTVGDSG 109

>1whk_A 1700024K14RIK, riken cDNA 1700024K14; structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: b.34.10.1 Length = 91

 Score =  108 bits (272), Expect = 3e-31
 Identities = 23/85 (27%), Positives = 38/85 (44%), Gaps = 1/85 (1%)

Query: 118 EDLCSNITVGDRCEVDPGAKRGVVKYVGQAESIAPGFWVGIQYDEPLGKHNGIVKGVRYF 177
            +    +  G +  +    +   V+YVG  +  A G W+G++     GK++G V   RYF
Sbjct: 7   GEGTVKLHEGSQVLLTSSNEMATVRYVGPTD-FASGIWLGLELRSAKGKNDGAVGDKRYF 65

Query: 178 ECPPLHGAMVRPDKVKVGDYPERDP 202
            C P +G +VRP +V          
Sbjct: 66  TCKPNYGVLVRPSRVTYRGISGPSS 90

>2cp5_A Restin; microtubule binding, cytoskeleton associated protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.34.10.1 Length = 141

 Score =  109 bits (273), Expect = 7e-31
 Identities = 35/97 (36%), Positives = 53/97 (54%), Gaps = 2/97 (2%)

Query: 102 SQNPSAVENKLSNNYMEDLCSNITVGDRCEVDPGAKRGVVKYVGQAESIAPGFWVGIQYD 161
           + +     +  S+   E+   +  VG+R  V  G K G ++++G+ +  APG W GI  D
Sbjct: 43  TISSEKASSTPSSETQEEFVDDFRVGERVWV-NGNKPGFIQFLGETQ-FAPGQWAGIVLD 100

Query: 162 EPLGKHNGIVKGVRYFECPPLHGAMVRPDKVKVGDYP 198
           EP+GK++G V GVRYF+C PL G   RP K+      
Sbjct: 101 EPIGKNDGSVAGVRYFQCEPLKGIFTRPSKLTRKVSG 137

>2cp0_A Clipr-59 protein, clipr59; microtubule binding, cytoskeleton associated protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.34.10.1 Length = 95

 Score =  107 bits (269), Expect = 9e-31
 Identities = 30/75 (40%), Positives = 41/75 (54%), Gaps = 2/75 (2%)

Query: 122 SNITVGDRCEVDPGAKRGVVKYVGQAESIAPGFWVGIQYDEPLGKHNGIVKGVRYFECPP 181
             + +GDR  +  G K G +++ G  E  A G WVG++ DEP GK++G V GVRYF CPP
Sbjct: 15  LGLRLGDRVLL-DGQKTGTLRFCGTTE-FASGQWVGVELDEPEGKNDGSVGGVRYFICPP 72

Query: 182 LHGAMVRPDKVKVGD 196
             G      K+    
Sbjct: 73  KQGLFASVSKISKAV 87

>3rdv_A CAP-Gly domain-containing linker protein 1; cytoskeletal protein, CAP Gly protein complex, structural PR; HET: BME; 1.75A {Homo sapiens} PDB: 2qk0_A Length = 72

 Score =  106 bits (267), Expect = 1e-30
 Identities = 33/71 (46%), Positives = 46/71 (64%), Gaps = 2/71 (2%)

Query: 123 NITVGDRCEVDPGAKRGVVKYVGQAESIAPGFWVGIQYDEPLGKHNGIVKGVRYFECPPL 182
           +  VG+R  V  G K G ++++G+ +  APG W GI  DEP+GK++G V GVRYF+C PL
Sbjct: 2   DFRVGERVWV-NGNKPGFIQFLGETQ-FAPGQWAGIVLDEPIGKNDGSVAGVRYFQCEPL 59

Query: 183 HGAMVRPDKVK 193
            G   RP K+ 
Sbjct: 60  KGIFTRPSKLT 70

>2z0w_A CAP-Gly domain-containing linker protein 4; alternative splicing, ANK repeat, protein binding, structural genomics, NPPSFA; 2.50A {Homo sapiens} Length = 96

 Score =  107 bits (268), Expect = 1e-30
 Identities = 26/75 (34%), Positives = 43/75 (57%), Gaps = 2/75 (2%)

Query: 122 SNITVGDRCEVDPGAKRGVVKYVGQAESIAPGFWVGIQYDEPLGKHNGIVKGVRYFECPP 181
             + +G+R  V  G + G +++ G     APG+W GI+ ++P GK++G V GV+YF C P
Sbjct: 9   GELRLGERVLV-VGQRLGTIRFFGTTN-FAPGYWYGIELEKPHGKNDGSVGGVQYFSCSP 66

Query: 182 LHGAMVRPDKVKVGD 196
            +G    P +V+   
Sbjct: 67  RYGIFAPPSRVQRVT 81

>1t0y_A Tubulin folding cofactor B; ubiquitin-like, cytoskeleton, microtubule, CESG, structural genomics, protein structure initiative, PSI; NMR {Caenorhabditis elegans} SCOP: d.15.1.1 Length = 122

 Score =  107 bits (268), Expect = 3e-30
 Identities = 34/99 (34%), Positives = 56/99 (56%), Gaps = 4/99 (4%)

Query: 1   MSVESVKDKLWRKCGTSVNSMSLELYDDTNTKVAALTDNSRPLGFYSPLQGYRLHVIDLD 60
           MS+  +K KL    GT+V+SM ++L+D  +     LTD ++ L       GYR+H +D+ 
Sbjct: 28  MSLNDLKKKLELVVGTTVDSMRIQLFDGDDQLKGELTDGAKSLKDLGVRDGYRIHAVDVT 87

Query: 61  PSSVTSGGWLEDTSLVEKYTISEEEYSKRDGTFRKFKEK 99
             +       +D S+VEKY +S++ Y KR  + R +K+K
Sbjct: 88  GGN----EDFKDESMVEKYEMSDDTYGKRTDSVRAWKKK 122

>1whj_A 1700024K14RIK, riken cDNA 1700024K14; structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: b.34.10.1 Length = 102

 Score =  106 bits (266), Expect = 3e-30
 Identities = 28/75 (37%), Positives = 40/75 (53%), Gaps = 2/75 (2%)

Query: 122 SNITVGDRCEVDPGAKRGVVKYVGQAESIAPGFWVGIQYDEPLGKHNGIVKGVRYFECPP 181
             + +GDR  +  G K G +++ G  E  A G W GI+ DEP GK+NG V  V+YF+C P
Sbjct: 23  LGLKLGDRVVI-AGQKVGTLRFCGTTE-FASGQWAGIELDEPEGKNNGSVGRVQYFKCAP 80

Query: 182 LHGAMVRPDKVKVGD 196
            +G      K+    
Sbjct: 81  KYGIFAPLSKISKLK 95

>1whl_A Cylindromatosis tumor suppressor CYLD; deubiquitinating enzyme, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.34.10.1 Length = 95

 Score = 96.0 bits (239), Expect = 3e-26
 Identities = 23/86 (26%), Positives = 38/86 (44%), Gaps = 9/86 (10%)

Query: 122 SNITVGDRCEV----DPGAKRGVVKYVG--QAESIAPGFWVGIQYDE---PLGKHNGIVK 172
           S I VG   +V          GVV++ G   AE    G + G++  E     G  +G+ +
Sbjct: 6   SGIDVGCPVKVQLRSGEEKFPGVVRFRGPLLAERTVSGIFFGVELLEEGRGQGFTDGVYQ 65

Query: 173 GVRYFECPPLHGAMVRPDKVKVGDYP 198
           G + F+C    G  V  DK+++ +  
Sbjct: 66  GKQLFQCDEDCGVFVALDKLELIESG 91

>1ixd_A Cylindromatosis tumour-suppressor CYLD; structural genomics, riken structural genomics/proteomics initiative, RSGI, antitumor protein; NMR {Homo sapiens} SCOP: b.34.10.1 Length = 104

 Score = 95.6 bits (238), Expect = 6e-26
 Identities = 18/84 (21%), Positives = 32/84 (38%), Gaps = 4/84 (4%)

Query: 122 SNITVGDRCEVDPGAKR-GVVKYVGQAESIAPGFWVGIQYDEPL-GKHNGIVKGVRYFEC 179
             + VG   EV       GV++++GQ          G++ ++   G  +G  +G RYF C
Sbjct: 16  HGLEVGSLAEVKENPPFYGVIRWIGQPPG-LNEVLAGLELEDECAGCTDGTFRGTRYFTC 74

Query: 180 PPLHGAMVRPDKVKV-GDYPERDP 202
                  V+    +    +    P
Sbjct: 75  ALKKALFVKLKSCRPDSRFASLQP 98

>1v6e_A Cytoskeleton-associated protein 1; tubulin-specific chaperone B, tubulin folding cofactor B, microtubule, ubiquitin-like fold, structural genomics; NMR {Mus musculus} SCOP: d.15.1.1 Length = 95

 Score = 84.9 bits (210), Expect = 5e-22
 Identities = 22/67 (32%), Positives = 31/67 (46%)

Query: 1  MSVESVKDKLWRKCGTSVNSMSLELYDDTNTKVAALTDNSRPLGFYSPLQGYRLHVIDLD 60
          +++   K KL    G+  + M LELY   +   + L      LG Y    G R+HVID  
Sbjct: 29 LTIAEFKCKLELVVGSPASCMELELYGADDKFYSKLDQEDALLGSYPVDDGCRIHVIDHS 88

Query: 61 PSSVTSG 67
           S  +SG
Sbjct: 89 GSGPSSG 95

>2kj6_A Tubulin folding cofactor B; methods development, NESG, solution PSI-2, structural genomics, protein structure initiative; NMR {Arabidopsis thaliana} Length = 97

 Score = 78.8 bits (194), Expect = 1e-19
 Identities = 46/61 (75%), Positives = 57/61 (93%)

Query: 1  MSVESVKDKLWRKCGTSVNSMSLELYDDTNTKVAALTDNSRPLGFYSPLQGYRLHVIDLD 60
          MSVE+VK+KLW+KCGTSVNSM+LELYDD+ +KVA L+D+SRPLGF+SP  G+RLH+IDLD
Sbjct: 37 MSVEAVKEKLWKKCGTSVNSMALELYDDSGSKVAVLSDDSRPLGFFSPFDGFRLHIIDLD 96

Query: 61 P 61
          P
Sbjct: 97 P 97

>2kjr_A CG11242; UBL, ubiquitin, ubiquitin-like, structural genomics, PSI-2, protein structure initiative; NMR {Drosophila melanogaster} Length = 95

 Score = 71.5 bits (175), Expect = 8e-17
 Identities = 18/58 (31%), Positives = 33/58 (56%), Gaps = 1/58 (1%)

Query: 1  MSVESVKDKLWRKCGTSVNSMSLELYDDTNTKVAALTDNSRPLGFYSPLQGYRLHVID 58
          ++V  +K KL    G    +M ++++   +T V+ + +N   LG+Y+   G RLHV+D
Sbjct: 38 LTVAQLKTKLEILTGGCAGTMKVQVFKG-DTCVSTMDNNDAQLGYYANSDGLRLHVVD 94

>1whm_A Cylindromatosis tumor suppressor CYLD; deubiquitinating enzyme, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.34.10.1 Length = 92

 Score = 54.4 bits (130), Expect = 2e-10
 Identities = 12/74 (16%), Positives = 28/74 (37%), Gaps = 4/74 (5%)

Query: 123 NITVGDRCEV--DPGAKRGVVKYVGQ-AESIAPGFWVGIQYDEPLGKHNGIVKGVRYFEC 179
            + +  R  +      + G V +        + G++VG+  D P+G  +G   GV+    
Sbjct: 9   PLEINSRVSLKVGETIESGTVIFCDVLPGKESLGYFVGVDMDNPIGNWDGRFDGVQLCSF 68

Query: 180 P-PLHGAMVRPDKV 192
                  ++  + +
Sbjct: 69  ACVESTILLHINDI 82

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	208
4b6m_A	84	Tubulin-specific chaperone, putative; structural p	100.0
1whg_A	113	Tubulin specific chaperone B; microtubule binding,	100.0
1lpl_A	95	Hypothetical 25.4 kDa protein F53F4.3 in chromosom	100.0
2e3h_A	90	Restin; CAP-Gly, cytoplasmic linker, tubulin bindi	99.97
1t0y_A	122	Tubulin folding cofactor B; ubiquitin-like, cytosk	99.97
1whh_A	102	Clipr-59; microtubule binding, trans-golgi network	99.96
3rdv_A	72	CAP-Gly domain-containing linker protein 1; cytosk	99.96
2cp6_A	172	Restin; microtubule binding, cytoskeleton associat	99.96
2e3i_A	86	Restin; CAP-Gly, cytoplasmic linker, tubulin bindi	99.96
1txq_A	93	Dynactin 1; protein complex, structural protein/pr	99.96
2cp2_A	95	CLIP-115, KIAA0291; microtubule binding, cytoskele	99.96
2cp3_A	84	CLIP-115, KIAA0291; microtubule binding, cytoskele	99.96
1whk_A	91	1700024K14RIK, riken cDNA 1700024K14; structural g	99.96
1whl_A	95	Cylindromatosis tumor suppressor CYLD; deubiquitin	99.96
2z0w_A	96	CAP-Gly domain-containing linker protein 4; altern	99.96
2coz_A	122	CAP350, centrosome-associated protein 350; microtu	99.96
1ixd_A	104	Cylindromatosis tumour-suppressor CYLD; structural	99.96
2coy_A	112	Dynactin-1; microtubule binding, cytoskeleton asso	99.95
2cp0_A	95	Clipr-59 protein, clipr59; microtubule binding, cy	99.95
1whj_A	102	1700024K14RIK, riken cDNA 1700024K14; structural g	99.95
2cow_A	100	Kinesin-like protein KIF13B; microtubule binding,	99.95
2cp5_A	141	Restin; microtubule binding, cytoskeleton associat	99.95
1whm_A	92	Cylindromatosis tumor suppressor CYLD; deubiquitin	99.94
4b6w_A	86	Tubulin-specific chaperone; CAP-Gly, ubiquitin-lik	99.75
2kj6_A	97	Tubulin folding cofactor B; methods development, N	99.64
1wjn_A	97	Tubulin-folding protein TBCE; ubiquitin-like domai	99.61
1v6e_A	95	Cytoskeleton-associated protein 1; tubulin-specifi	99.61
2kjr_A	95	CG11242; UBL, ubiquitin, ubiquitin-like, structura	99.48
1wxv_A	92	BAG-family molecular chaperone regulator-1; struct	98.98
3m63_B	101	Ubiquitin domain-containing protein DSK2; armadill	98.93
2bwf_A	77	Ubiquitin-like protein DSK2; signaling protein, UB	98.91
1uel_A	95	HHR23B, UV excision repair protein RAD23 homolog B	98.91
2wyq_A	85	HHR23A, UV excision repair protein RAD23 homolog A	98.9
1wf9_A	107	NPL4 family protein; beta-grAsp fold like domain,	98.9
3phx_B	79	Ubiquitin-like protein ISG15; OTU domain, DE-ubiqu	98.89
1v5o_A	102	1700011N24RIK protein; hypothetical protein, ubiqu	98.88
2faz_A	78	Ubiquitin-like containing PHD and ring finger DOM	98.86
2kd0_A	85	LRR repeats and ubiquitin-like domain-containing p	98.82
3plu_A	93	Ubiquitin-like modifier HUB1; ubiquitin-like, HUB-	98.82
2kk8_A	84	Uncharacterized protein AT4G05270; solution arabid	98.82
4ajy_B	118	Transcription elongation factor B polypeptide 2; E	98.82
2klc_A	101	Ubiquilin-1; ubiquitin-like, structural genomics,	98.79
4fbj_B	88	NEDD8; effector-HOST target complex, glutamine dea	98.79
2kan_A	94	Uncharacterized protein AR3433A; ubiquitin fold, a	98.78
3v6c_B	91	Ubiquitin; structural genomics, structural genomic	98.78
1ndd_A	76	NEDD8, protein (ubiquitin-like protein NEDD8); pro	98.78
1ttn_A	106	DC-UBP, dendritic cell-derived ubiquitin-like prot	98.76
3n3k_B	85	Ubiquitin; hydrolase, protease, thiol protease, DU	98.76
1v86_A	95	DNA segment, CHR 7, wayne state university 128, ex	98.76
2dzi_A	81	Ubiquitin-like protein 4A; GDX, structural genomic	98.75
3m62_B	106	UV excision repair protein RAD23; armadillo-like r	98.75
1we6_A	111	Splicing factor, putative; structural genomics, ub	98.74
4eew_A	88	Large proline-rich protein BAG6; ubiquitin-like fo	98.74
3dbh_I	88	NEDD8; cell cycle, activating enzyme, apoptosis, m	98.74
4dwf_A	90	HLA-B-associated transcript 3; ubiquitin-like doma	98.74
3a9j_A	76	Ubiquitin; protein complex, cytoplasm, isopeptide	98.74
1wju_A	100	NEDD8 ultimate buster-1; ubiquitin-like domain, st	98.73
1wh3_A	87	59 kDa 2'-5'-oligoadenylate synthetase like protei	98.72
1wy8_A	89	NP95-like ring finger protein, isoform A; ubiquiti	98.72
4hcn_B	98	Polyubiquitin, ubiquitin; ubiquitin/NEDD8 deamidas	98.71
3mtn_B	85	UBA80, ubcep1, ubiquitin variant UBV.21.4; ubiquit	98.71
2hj8_A	88	Interferon-induced 17 kDa protein; HR2873B, human	98.7
1sif_A	88	Ubiquitin; hydrophobic mutants, folding, stability	98.7
3k9o_B	96	Ubiquitin, UBB+1; E2-25K, complex structure, ATP-b	98.69
1j8c_A	125	Ubiquitin-like protein hplic-2; ubiquitin-like dom	98.68
2l7r_A	93	Ubiquitin-like protein FUBI; structural genomics,	98.67
3b08_A	152	Polyubiquitin-C, ubiquitin; protein complex, signa	98.67
3b1l_X	76	E3 ubiquitin-protein ligase parkin; proteasome, AL	98.12
3vdz_A	111	Ubiquitin-40S ribosomal protein S27A; gadolinium,	98.66
2kdi_A	114	Ubiquitin, vacuolar protein sorting-associated pro	98.66
2fnj_B	118	Transcription elongation factor B polypeptide 2; b	98.66
1wx8_A	96	Riken cDNA 4931431F19; ubiquitin-like domain, ubiq	98.65
1wia_A	95	Hypothetical ubiquitin-like protein (riken cDNA 20	98.65
4dbg_A	105	Ranbp-type and C3HC4-type zinc finger-containing;	98.64
1x1m_A	107	Ubiquitin-like protein SB132; structural genomics,	98.64
1we7_A	115	SF3A1 protein; structural genomics, ubiquitin-like	98.63
1wx7_A	106	Ubiquilin 3; ubiquitin-like domain, structural gen	98.63
3rt3_B	159	Ubiquitin-like protein ISG15; ubiquitin-like domai	98.62
1yqb_A	100	Ubiquilin 3; structural genomics consortium, ubiqu	98.62
1yx5_B	98	Ubiquitin; proteasome, UIM, hydrolase; NMR {Homo s	98.61
2ojr_A	111	Ubiquitin; lanthide-binding TAG, terbium, TB, SAD	98.61
4a20_A	98	Ubiquitin-like protein MDY2; protein binding, GET-	98.61
3u30_A	172	Ubiquitin, linear DI-ubiquitin; immune system; 2.4	98.6
1uh6_A	100	Ubiquitin-like 5; beta-grAsp fold, structural geno	98.59
1wgg_A	96	Ubiquitin carboxyl-terminal hydrolase 14; ubiquiti	98.59
2lxa_A	87	Ubiquitin-like protein MDY2; ubiquitin-like domain	98.59
1v5t_A	90	8430435I17RIK protein; hypothetical protein, ubiqu	98.56
2dzj_A	88	Synaptic glycoprotein SC2; ubiquitin-like fold, st	98.56
1wgd_A	93	Homocysteine-responsive endoplasmic reticulum- res	98.56
2uyz_B	79	Small ubiquitin-related modifier 1; sumoylation, c	98.55
2dzm_A	100	FAS-associated factor 1; ubiquitin-like domain, HF	98.53
2kzr_A	86	Ubiquitin thioesterase OTU1; structural genomics,	98.52
3l0w_B	169	Monoubiquitinated proliferating cell nuclear antig	98.51
3rt3_B	159	Ubiquitin-like protein ISG15; ubiquitin-like domai	98.5
3u5e_m	128	60S ribosomal protein L40; translation, ribosome,	98.49
1wyw_B	97	Ubiquitin-like protein SMT3C; hydrolase; 2.10A {Ho	98.47
2kdb_A	99	Homocysteine-responsive endoplasmic reticulum- res	98.47
1v2y_A	105	3300001G02RIK protein; hypothetical protein, ubiqu	98.43
3q3f_A	189	Ribonuclease/ubiquitin chimeric protein; domain SW	98.41
3b08_A	152	Polyubiquitin-C, ubiquitin; protein complex, signa	98.4
3u5c_f	152	40S ribosomal protein S31; translation, ribosome,	98.39
2daf_A	118	FLJ35834 protein; hypothetical protein FLJ35834, u	98.25
1se9_A	126	Ubiquitin family; ubiquitin-like, cell-free, wheat	98.23
3shq_A	320	UBLCP1; phosphatase, hydrolase; 1.96A {Drosophila	98.14
1wgh_A	116	Ubiquitin-like 3, HCG-1 protein; ubiquitin-like fo	98.14
2gow_A	125	HCG-1 protein, ubiquitin-like protein 3; BC059385,	97.99
1oqy_A	368	HHR23A, UV excision repair protein RAD23 homolog A	97.81
2io1_B	94	Small ubiquitin-related modifier 3 precursor; SUMO	97.6
2xzm_9	189	RPS31E; ribosome, translation; 3.93A {Tetrahymena	97.53
1wm3_A	72	Ubiquitin-like protein SMT3B; ubiquitin fold, half	97.5
2io0_B	91	Small ubiquitin-related modifier 2 precursor; SUMO	97.31
3a4r_A	79	Nfatc2-interacting protein; ubiquitin fold, coiled	97.23
2d07_B	93	Ubiquitin-like protein SMT3B; hydrolase; 2.10A {Ho	97.23
1wz0_A	104	Ubiquitin-like protein SMT3B; SUMO-2, ubiquitin-li	97.07
2eke_C	106	Ubiquitin-like protein SMT3; UBC9, SUMO binding mo	96.88
4efo_A	94	Serine/threonine-protein kinase TBK1; ubiquitin li	96.48
2k8h_A	110	Small ubiquitin protein; SUMO, post-translational	96.42
2pjh_A	80	Protein NPL4, nuclear protein localization protein	95.89
3kyd_D	115	Small ubiquitin-related modifier 1; SUMO, thioeste	95.3
3pge_A	200	SUMO-modified proliferating cell nuclear antigen;	94.91
3tix_A	207	Ubiquitin-like protein SMT3, RNA-induced transcri	93.8
3jyu_A	231	Ubiquitin carboxyl-terminal hydrolase; domain in u	92.3
3h6n_A	127	Plexin-D1; structural genomics consortium, SGC, me	92.05
4a3p_A	217	Ubiquitin carboxyl-terminal hydrolase 15; 1.40A {H	91.78
4e74_A	117	Plexin-A4; RBD, structural genomics, structural ge	91.65
2r2o_A	138	Plexin-B1; effector domain, structural genomics, s	91.09
3v7o_A	227	Minor nucleoprotein VP30; ssgcid, seattle structur	89.44
3kuz_A	126	Plexin-C1; structural genomics, structural genomic	88.28
3goe_A	82	DNA repair protein RAD60; SUMO-like domain, sumoyl	86.38
4e71_A	111	Plexin-B2, MM1; transmembrane, signaling, RBD, str	85.95

>4b6m_A Tubulin-specific chaperone, putative; structural protein; 1.59A {Trypanosoma brucei}

Probab=100.00  E-value=4.2e-35  Score=213.98  Aligned_cols=81  Identities=49%  Similarity=1.084  Sum_probs=74.7

Q ss_pred             cCCCCcCCEEEEcCCCceeEEEEecccCCCCCCcEEEEEEeCCCCCCCcEECCEEeeecCCCceeeecCCCCccCCCCCC
Q 028484          121 CSNITVGDRCEVDPGAKRGVVKYVGQAESIAPGFWVGIQYDEPLGKHNGIVKGVRYFECPPLHGAMVRPDKVKVGDYPER  200 (208)
Q Consensus       121 ~~~~~vG~rv~v~~~~~~G~vryvG~~~~~~~g~wvGVelde~~GkndGs~~G~rYF~c~~~~G~Fv~~~~v~~g~fp~~  200 (208)
                      ...|+||+||+|.++.++|||||+|+++..++|.|+|||||+|.||||||++|+|||+|+|+||+||||++|++|||||.
T Consensus         3 m~~i~vG~Rv~v~~~~~~G~VryvG~v~~~~~G~wvGVelDep~GkndGsv~G~rYF~C~~~~G~Fvr~~~v~~gd~Ppe   82 (84)
T 4b6m_A            3 METIHVGDRCLCRPGDRLGSVRFVGRVASLKPGYWVGVEFDEPVGKGDGTVKGTRVFQCQPNYGGFLRPDQVEVGDFPPE   82 (84)
T ss_dssp             --CCCTTCEEEETTTTEEEEEEEEEECTTSCSSEEEEEEESSSCCSBSSEETTEESSCCCTTSEEEECGGGEEECCCCCC
T ss_pred             ccCcccCCEEEEcCCCeEEEEEEEecCCCCCCCEEEEEEECCCCCCcCCEECCEEEEecCCCeEEEecHHHeEECCcCCC
Confidence            35799999999976789999999999866579999999999999999999999999999999999999999999999986


Q ss_pred             C
Q 028484          201 D  201 (208)
Q Consensus       201 d  201 (208)
                      |
T Consensus        83 ~   83 (84)
T 4b6m_A           83 V   83 (84)
T ss_dssp             C
T ss_pred             C
Confidence            5

>1whg_A Tubulin specific chaperone B; microtubule binding, cytoskeleton associated protein, ckapi, structural genomics; NMR {Mus musculus} SCOP: b.34.10.1

Probab=100.00  E-value=3.9e-35  Score=225.37  Aligned_cols=99  Identities=45%  Similarity=0.824  Sum_probs=86.0

Q ss_pred             cCCCchhhh-----ccccchhhhhcCCCCcCCEEEEc-CC--CceeEEEEecccCCCCCCcEEEEEEeCCCCCCCcEECC
Q 028484          102 SQNPSAVEN-----KLSNNYMEDLCSNITVGDRCEVD-PG--AKRGVVKYVGQAESIAPGFWVGIQYDEPLGKHNGIVKG  173 (208)
Q Consensus       102 ~~~p~~~~~-----~~~~~~~~~~~~~~~vG~rv~v~-~~--~~~G~vryvG~~~~~~~g~wvGVelde~~GkndGs~~G  173 (208)
                      +|||++.++     +..+++++..+..+.||+||.|. ++  .++|||||||++++ .+|.|+|||||+|.||||||++|
T Consensus         6 rf~~~~~~~~~~~~~~~~~~~~~~~~~~~VG~RV~V~~~g~~~~~GtVryvG~v~~-~~G~wvGVElDep~GKnDGsv~G   84 (113)
T 1whg_A            6 SGNEELRAQQEAEAAQRLSEEKAQASAISVGSRCEVRAPDHSLRRGTVMYVGLTDF-KPGYWVGVRYDEPLGKNDGSVNG   84 (113)
T ss_dssp             CCCSTHHHHHHHHHHHTTHHHHHHHTTSCSSCEEEECCSSSSCEEEEEEEEEECSS-SSSEEEEEEESSSCCSBBSEETT
T ss_pred             ccChhhhhhhhhHhhhhhhHhhhhhhcCCCCCEEEEecCCCcceEEEEEEecccCC-CCCEEEEEEecCCCCccCCEECC
Confidence            688886432     12233444566789999999996 34  69999999999999 89999999999999999999999


Q ss_pred             EEeeecCCCceeeecCCCCccCCCCCCC
Q 028484          174 VRYFECPPLHGAMVRPDKVKVGDYPERD  201 (208)
Q Consensus       174 ~rYF~c~~~~G~Fv~~~~v~~g~fp~~d  201 (208)
                      +|||+|+|+||+||||++|++||||++|
T Consensus        85 ~rYF~C~p~~GiFvr~~~v~~gdfp~~~  112 (113)
T 1whg_A           85 KRYFECQAKYGAFVKPSAVTVGDSGPSS  112 (113)
T ss_dssp             EECSCCCTTTEEEECGGGEEEEECCSSC
T ss_pred             EEEeeeCCCeEEEECHHHeEECCCCCCC
Confidence            9999999999999999999999999976

>1lpl_A Hypothetical 25.4 kDa protein F53F4.3 in chromosome V; structural genomics, CAP-Gly domain, cytoskeleton, tubulin, PSI; 1.77A {Caenorhabditis elegans} SCOP: b.34.10.1 PDB: 1tov_A

Probab=100.00  E-value=5.8e-35  Score=218.36  Aligned_cols=84  Identities=55%  Similarity=1.048  Sum_probs=78.3

Q ss_pred             hhhhcCCCCcCCEEEEc-CC--CceeEEEEecccCCCCCCcEEEEEEeCCCCCCCcEECCEEeeecCCCceeeecCCCCc
Q 028484          117 MEDLCSNITVGDRCEVD-PG--AKRGVVKYVGQAESIAPGFWVGIQYDEPLGKHNGIVKGVRYFECPPLHGAMVRPDKVK  193 (208)
Q Consensus       117 ~~~~~~~~~vG~rv~v~-~~--~~~G~vryvG~~~~~~~g~wvGVelde~~GkndGs~~G~rYF~c~~~~G~Fv~~~~v~  193 (208)
                      +++.+..++||+||+|. ++  .++|||||+|++++ .+|.|+|||||+|.||||||++|+|||+|+|+||+||||++|+
T Consensus         5 ~~~~~~~~~vG~rv~V~~~g~~~~~GtVryvG~~~~-~~G~wvGVElDep~GKnDGsv~G~rYF~C~p~~G~Fvr~~~v~   83 (95)
T 1lpl_A            5 NEEAAKNIMVGNRCEVTVGAQMARRGEVAYVGATKF-KEGVWVGVKYDEPVGKNDGSVAGVRYFDCDPKYGGFVRPVDVK   83 (95)
T ss_dssp             HHHHHHTCCTTCEEEECCTTSCCEEEEEEEEECCSS-SSSCEEEEEESSSCSSBSSEETTEECSCCCTTSEEEECGGGEE
T ss_pred             hhhhhhcCCCCCEEEEccCCCCceEEEEEEecccCC-CCCEEEEEEccCCCCccCCEECCEEEeEeCCCEEEEEcHHHce
Confidence            34556689999999996 45  68999999999999 7999999999999999999999999999999999999999999


Q ss_pred             cCCCCCCC
Q 028484          194 VGDYPERD  201 (208)
Q Consensus       194 ~g~fp~~d  201 (208)
                      +||||++|
T Consensus        84 ~gdfp~~d   91 (95)
T 1lpl_A           84 VGDFPELS   91 (95)
T ss_dssp             ESCCCCCC
T ss_pred             ECCCCCCC
Confidence            99999988

>2e3h_A Restin; CAP-Gly, cytoplasmic linker, tubulin binding, structural protein; 1.45A {Homo sapiens} SCOP: b.34.10.1 PDB: 2e4h_A

Probab=99.97  E-value=1.2e-31  Score=198.51  Aligned_cols=79  Identities=42%  Similarity=0.856  Sum_probs=72.8

Q ss_pred             CCCcCCEEEEcCCCceeEEEEecccCCCCCCcEEEEEEeCCCCCCCcEECCEEeeecCCCceeeecCCCCccCCCCCCCC
Q 028484          123 NITVGDRCEVDPGAKRGVVKYVGQAESIAPGFWVGIQYDEPLGKHNGIVKGVRYFECPPLHGAMVRPDKVKVGDYPERDP  202 (208)
Q Consensus       123 ~~~vG~rv~v~~~~~~G~vryvG~~~~~~~g~wvGVelde~~GkndGs~~G~rYF~c~~~~G~Fv~~~~v~~g~fp~~d~  202 (208)
                      +|+||+||.|. +.++|||||+|++++ .+|.|+|||||+|.||||||++|+|||+|+|+||+||++++|+.++||++.+
T Consensus         1 ~l~vG~rV~V~-g~~~GtVryvG~~~~-~~G~wvGVelDep~GKndGsv~G~rYF~C~p~~G~Fv~~~kv~~~~~p~~~p   78 (90)
T 2e3h_A            1 ELKIGDRVLVG-GTKAGVVRFLGETDF-AKGEWCGVELDEPLGKNDGAVAGTRYFQCQPKYGLFAPVHKVTKIGFPSTTP   78 (90)
T ss_dssp             CCCTTCEEEET-TTEEEEEEEEEECSS-SSSEEEEEEESSSCCSBSSEETTEESCCCCTTCEEEEEGGGEEETTSCCC--
T ss_pred             CCcCCCEEEEC-CCCEEEEEEeccCCC-CCCeEEEEEECCCCCCCCCEECCEEeeecCCCcEEEEcHHHeEECCCCCCCc
Confidence            47899999996 578999999999999 8999999999999999999999999999999999999999999999998775


Q ss_pred             C
Q 028484          203 F  203 (208)
Q Consensus       203 ~  203 (208)
                      .
T Consensus        79 ~   79 (90)
T 2e3h_A           79 A   79 (90)
T ss_dssp             -
T ss_pred             c
Confidence            4

>1t0y_A Tubulin folding cofactor B; ubiquitin-like, cytoskeleton, microtubule, CESG, structural genomics, protein structure initiative, PSI; NMR {Caenorhabditis elegans} SCOP: d.15.1.1

Probab=99.97  E-value=7.1e-31  Score=203.70  Aligned_cols=95  Identities=36%  Similarity=0.622  Sum_probs=58.8

Q ss_pred             CCHHHHHHhcccccccCCCCeEEEEEcCCCCeeeecCCCCCcCCCCCCCCCcEEEEecCCCCCccCCCcccCCCcceeee
Q 028484            1 MSVESVKDKLWRKCGTSVNSMSLELYDDTNTKVAALTDNSRPLGFYSPLQGYRLHVIDLDPSSVTSGGWLEDTSLVEKYT   80 (208)
Q Consensus         1 ~TI~~LK~KLe~itGi~p~~m~L~l~~~~g~~~~~l~dd~~~L~~y~i~~g~~IhV~D~~p~s~~~~~~l~D~s~vek~~   80 (208)
                      +||++||+||+.++||||++|+|++...+|+.++.|.+|+++|++|++++|++|||+|++|++  ++  |+|+|+|+||+
T Consensus        28 ~TV~~lK~ki~~~~Gip~~~qrL~~~g~~~~~~~~l~~D~~tL~~y~i~~g~~ihvvd~~p~~--~~--~~d~s~v~ky~  103 (122)
T 1t0y_A           28 MSLNDLKKKLELVVGTTVDSMRIQLFDGDDQLKGELTDGAKSLKDLGVRDGYRIHAVDVTGGN--ED--FKDESMVEKYE  103 (122)
T ss_dssp             SBHHHHHHHHHHHHCCCTTTEEEEEECSSSSEEEECCCCSSBTTTTTCCSSEEEEEEECTTCC--CC-------------
T ss_pred             CcHHHHHHHHHHHhCCCHHHeEEEEecCCCccccccCCCcCCHHHCCCCCCCEEEEEeCCCCC--CC--ccccccceeee
Confidence            599999999999999999999999986666766667789999999999999999999999988  33  99999999999


Q ss_pred             cCHHHHhcchhhHHHHHHH
Q 028484           81 ISEEEYSKRDGTFRKFKEK   99 (208)
Q Consensus        81 ls~e~Y~~r~dtv~~~k~~   99 (208)
                      ||+|+|++|+||||+||++
T Consensus       104 ~~~e~Y~~r~~tv~~~k~~  122 (122)
T 1t0y_A          104 MSDDTYGKRTDSVRAWKKK  122 (122)
T ss_dssp             -------------------
T ss_pred             cCHHHHhcchhHHHHHhhC
Confidence            9999999999999999985

>1whh_A Clipr-59; microtubule binding, trans-golgi network, structural genomics, riken structural genomics/proteomics initiative, RSGI, structural protein; NMR {Mus musculus} SCOP: b.34.10.1

Probab=99.96  E-value=2.5e-30  Score=195.19  Aligned_cols=78  Identities=42%  Similarity=0.927  Sum_probs=72.8

Q ss_pred             hcCCCCcCCEEEEcCCCceeEEEEecccCCCCCCcEEEEEEeCCCCCCCcEECCEEeeecCCCceeeecCCCCc-cCCCC
Q 028484          120 LCSNITVGDRCEVDPGAKRGVVKYVGQAESIAPGFWVGIQYDEPLGKHNGIVKGVRYFECPPLHGAMVRPDKVK-VGDYP  198 (208)
Q Consensus       120 ~~~~~~vG~rv~v~~~~~~G~vryvG~~~~~~~g~wvGVelde~~GkndGs~~G~rYF~c~~~~G~Fv~~~~v~-~g~fp  198 (208)
                      .+..++||+||.|. +.++|||||+|++++ .+|.|+|||||+|.|||||+++|+|||+|+|+||+||||++|+ ++|||
T Consensus        22 ~~~~~~VG~RV~V~-g~~~GtVryvG~v~~-~~G~wvGVElDep~GKnDGsv~G~rYF~C~p~~GiFvr~~~v~~~~d~p   99 (102)
T 1whh_A           22 EGAKAEVGDQVLVA-GQKQGIVRFYGKTDF-APGYWYGIELDQPTGKHDGSVFGVRYFTCAPRHGVFAPASRIQRIGSGP   99 (102)
T ss_dssp             SCCSSCTTSEEEET-TTEEEEEEEEEECSS-SSSEEEEEECSSSCCSSSSEETTEECSCCCTTTEEEECGGGEEECCSCT
T ss_pred             ccccCcCCCEEEEC-CCcEEEEEEeeecCC-CCCeEEEEEeCCCCCcCCCEECCEEeeecCCCcEEEecHHHeEECCCCC
Confidence            35679999999996 578999999999999 8999999999999999999999999999999999999999999 56898


Q ss_pred             C
Q 028484          199 E  199 (208)
Q Consensus       199 ~  199 (208)
                      +
T Consensus       100 ~  100 (102)
T 1whh_A          100 S  100 (102)
T ss_dssp             T
T ss_pred             C
Confidence            6

>3rdv_A CAP-Gly domain-containing linker protein 1; cytoskeletal protein, CAP Gly protein complex, structural PR; HET: BME; 1.75A {Homo sapiens} PDB: 2qk0_A

Probab=99.96  E-value=5e-30  Score=182.58  Aligned_cols=69  Identities=48%  Similarity=1.029  Sum_probs=65.7

Q ss_pred             CCCcCCEEEEcCCCceeEEEEecccCCCCCCcEEEEEEeCCCCCCCcEECCEEeeecCCCceeeecCCCCc
Q 028484          123 NITVGDRCEVDPGAKRGVVKYVGQAESIAPGFWVGIQYDEPLGKHNGIVKGVRYFECPPLHGAMVRPDKVK  193 (208)
Q Consensus       123 ~~~vG~rv~v~~~~~~G~vryvG~~~~~~~g~wvGVelde~~GkndGs~~G~rYF~c~~~~G~Fv~~~~v~  193 (208)
                      +++||+||+|. +.++|+|||+|++++ .+|.|+|||||+|.||||||++|+|||+|+|+||+||||++|+
T Consensus         2 ~~~vG~rv~v~-g~~~G~VryvG~~~~-~~g~w~GVeld~p~GkndGsv~G~rYF~c~p~~G~Fv~~~kvs   70 (72)
T 3rdv_A            2 DFRVGERVWVN-GNKPGFIQFLGETQF-APGQWAGIVLDEPIGKNDGSVAGVRYFQCEPLKGIFTRPSKLT   70 (72)
T ss_dssp             CCCTTCEEEET-TTEEEEEEEEECCSS-SSSCEEEEEESSSCSSBSSEETTEESCCCSTTCEEEECGGGEE
T ss_pred             CcccCCEEEEC-CCCEEEEEEeeeCCC-CCceEEEEEECCCCCccCCEECCEEeCccCCCCEEEecHHHcc
Confidence            58999999997 567999999999999 8999999999999999999999999999999999999999985

>2cp6_A Restin; microtubule binding, cytoskeleton associated protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.34.10.1

Probab=99.96  E-value=6.7e-30  Score=207.95  Aligned_cols=81  Identities=41%  Similarity=0.822  Sum_probs=76.2

Q ss_pred             cCCCCcCCEEEEcCCCceeEEEEecccCCCCCCcEEEEEEeCCCCCCCcEECCEEeeecCCCceeeecCCCCccCCCCCC
Q 028484          121 CSNITVGDRCEVDPGAKRGVVKYVGQAESIAPGFWVGIQYDEPLGKHNGIVKGVRYFECPPLHGAMVRPDKVKVGDYPER  200 (208)
Q Consensus       121 ~~~~~vG~rv~v~~~~~~G~vryvG~~~~~~~g~wvGVelde~~GkndGs~~G~rYF~c~~~~G~Fv~~~~v~~g~fp~~  200 (208)
                      ...|+||+||+|. +.++|+|||||++++ ..|.|+|||||+|.|||||+|+|+|||+|+|+||+||++++|.++|||++
T Consensus        36 ~~~l~VG~RV~V~-g~~~GtVRyvG~v~~-~~G~WvGVELDeP~GKnDGsv~G~rYF~C~p~~GiFVr~~kV~~~dfP~~  113 (172)
T 2cp6_A           36 ERELKIGDRVLVG-GTKAGVVRFLGETDF-AKGEWCGVELDEPLGKNDGAVAGTRYFQCQPKYGLFAPVHKVTKIGFPST  113 (172)
T ss_dssp             SSCCCSSCEEEET-TTEEEEEEEEEECSS-SSSEEEEEEESSSCCSBSSEETTEECCCCCTTTEEEEEGGGCEECCCSSC
T ss_pred             CccCccCCEEEEC-CCceEEEEEeCcCCC-CCCcEEEEEecCCCCccCCEECCEEeeeeCCCeEEEechHHeEECCcCCC
Confidence            4579999999996 578999999999999 89999999999999999999999999999999999999999999999987


Q ss_pred             CCC
Q 028484          201 DPF  203 (208)
Q Consensus       201 d~~  203 (208)
                      .+.
T Consensus       114 ~p~  116 (172)
T 2cp6_A          114 TPA  116 (172)
T ss_dssp             CSC
T ss_pred             Ccc
Confidence            754

>2e3i_A Restin; CAP-Gly, cytoplasmic linker, tubulin binding, structural protein; 2.00A {Homo sapiens} SCOP: b.34.10.1

Probab=99.96  E-value=9.3e-30  Score=186.91  Aligned_cols=75  Identities=44%  Similarity=0.937  Sum_probs=69.5

Q ss_pred             CCCcCCEEEEcCCCceeEEEEecccCCCCCCcEEEEEEeCCCCCCCcEECCEEeeecCCCceeeecCCCCccC-CCCC
Q 028484          123 NITVGDRCEVDPGAKRGVVKYVGQAESIAPGFWVGIQYDEPLGKHNGIVKGVRYFECPPLHGAMVRPDKVKVG-DYPE  199 (208)
Q Consensus       123 ~~~vG~rv~v~~~~~~G~vryvG~~~~~~~g~wvGVelde~~GkndGs~~G~rYF~c~~~~G~Fv~~~~v~~g-~fp~  199 (208)
                      .|+||+||.|. +.++|||||+|++++ .+|.|+|||||+|.||||||++|+|||+|+|+||+||||++|... +|++
T Consensus         2 ~~~vG~rv~v~-g~~~GtVryvG~~~~-~~G~wvGVelDep~GKndGsv~G~rYF~c~~~~G~Fvr~~~v~~~~~~~~   77 (86)
T 2e3i_A            2 DFRVGERVWVN-GNKPGFIQFLGETQF-APGQWAGIVLDEPIGKNDGSVAGVRYFQCEPLKGIFTRPSKLTRKVQAED   77 (86)
T ss_dssp             CCCTTCEEEET-TTEEEEEEEEEECSS-SSSEEEEEEESSSCSSBSSEETTEESSCCSTTCEEEECGGGEESSCCC--
T ss_pred             CccCCCEEEEC-CCcEEEEEEeeeCCC-CCCcEEEEEeCCCCCccCCEECCEEeeecCCCeEEEEcHHHcccccchhh
Confidence            58999999997 578999999999999 899999999999999999999999999999999999999999998 5764

>1txq_A Dynactin 1; protein complex, structural protein/protein binding complex; 1.80A {Homo sapiens} SCOP: b.34.10.1 PDB: 2hqh_A 2hkq_B 2hkn_A 2pzo_A 3e2u_A 2hl5_C 2hl3_A 3tq7_P

Probab=99.96  E-value=1.2e-29  Score=188.94  Aligned_cols=76  Identities=41%  Similarity=0.698  Sum_probs=69.2

Q ss_pred             hhcCCCCcCCEEEEcCCCceeEEEEecccCCCCCCcEEEEEEeCCCCCCCcEECCEEeeecCCCceeeecCCCCccC
Q 028484          119 DLCSNITVGDRCEVDPGAKRGVVKYVGQAESIAPGFWVGIQYDEPLGKHNGIVKGVRYFECPPLHGAMVRPDKVKVG  195 (208)
Q Consensus       119 ~~~~~~~vG~rv~v~~~~~~G~vryvG~~~~~~~g~wvGVelde~~GkndGs~~G~rYF~c~~~~G~Fv~~~~v~~g  195 (208)
                      ..+..++||+||.|....++|||||+|++++ .+|.|+|||||+|.||||||++|+|||+|+|+||+|||+++|++.
T Consensus         8 ~~~~~~~vG~rv~v~~~~~~GtVryvG~~~~-~~G~wvGVelDep~GKndGsv~G~rYF~C~~~~G~Fvr~~~v~~~   83 (93)
T 1txq_A            8 ASARPLRVGSRVEVIGKGHRGTVAYVGATLF-ATGKWVGVILDEAKGKNDGTVQGRKYFTCDEGHGIFVRQSQIQVF   83 (93)
T ss_dssp             ---CCCCTTCEEEETTTCCEEEEEEEECCSS-SSSCEEEEEESSSCSSBSSEETTEESCCCCTTCEEEECGGGEEEC
T ss_pred             cccccCCCCCEEEECCCCeEEEEEEeeecCC-CCCcEEEEEeCCCCCCCCCEECCEEeeecCCCeEEEEcHHHeEEc
Confidence            3456799999999963468999999999999 899999999999999999999999999999999999999999986

>2cp2_A CLIP-115, KIAA0291; microtubule binding, cytoskeleton associated protein, CYLN2, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.34.10.1 PDB: 2cp7_A

Probab=99.96  E-value=1e-29  Score=189.79  Aligned_cols=75  Identities=48%  Similarity=0.992  Sum_probs=70.7

Q ss_pred             hhcCCCCcCCEEEEcCCCceeEEEEecccCCCCCCcEEEEEEeCCCCCCCcEECCEEeeecCCCceeeecCCCCccC
Q 028484          119 DLCSNITVGDRCEVDPGAKRGVVKYVGQAESIAPGFWVGIQYDEPLGKHNGIVKGVRYFECPPLHGAMVRPDKVKVG  195 (208)
Q Consensus       119 ~~~~~~~vG~rv~v~~~~~~G~vryvG~~~~~~~g~wvGVelde~~GkndGs~~G~rYF~c~~~~G~Fv~~~~v~~g  195 (208)
                      +.+..++||+||.|. +.++|||||+|++++ .+|.|+|||||+|.|||||+++|+|||+|+|+||+||||++|...
T Consensus        14 ~~~~~~~vG~rV~V~-g~~~GtVryvG~v~~-~~G~wvGVElDep~GKnDGsv~G~rYF~C~p~~G~Fvr~~kv~~~   88 (95)
T 2cp2_A           14 DFLGDFVVGERVWVN-GVKPGVVQYLGETQF-APGQWAGVVLDDPVGKNDGAVGGVRYFECPALQGIFTRPSKLTRQ   88 (95)
T ss_dssp             SSCCSCCTTCEEEGG-GSCEEEEEEEEECSS-SCSEEEEEEESSSCSSBBSEETTEECCCCCTTTEEEECGGGCCSS
T ss_pred             hhhhcCcCCCEEEEC-CceEEEEEEecccCC-CCCEEEEEEecCCCCccCCEECCEEecccCCCeEEEEcHHHCccC
Confidence            556779999999997 578999999999999 899999999999999999999999999999999999999999875

>2cp3_A CLIP-115, KIAA0291; microtubule binding, cytoskeleton associated protein, CYLN2, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.34.10.1

Probab=99.96  E-value=3.3e-29  Score=183.22  Aligned_cols=75  Identities=47%  Similarity=0.864  Sum_probs=69.5

Q ss_pred             cCCCCcCCEEEEcCCCceeEEEEecccCCCCCCcEEEEEEeCCCCCCCcEECCEEeeecCCCceeeecCCCCccCCC
Q 028484          121 CSNITVGDRCEVDPGAKRGVVKYVGQAESIAPGFWVGIQYDEPLGKHNGIVKGVRYFECPPLHGAMVRPDKVKVGDY  197 (208)
Q Consensus       121 ~~~~~vG~rv~v~~~~~~G~vryvG~~~~~~~g~wvGVelde~~GkndGs~~G~rYF~c~~~~G~Fv~~~~v~~g~f  197 (208)
                      ...++||+||+|. +.++|||||+|++++ .+|.|+|||||+|.||||||++|+|||+|+|+||+|||+++|..-..
T Consensus         5 ~~~~~vG~rv~v~-g~~~GtVryvG~~~~-~~G~wvGVelDep~GkndGsv~G~rYF~c~~~~G~Fv~~~kv~~~~~   79 (84)
T 2cp3_A            5 SSGLRLGDRVLVG-GTKTGVVRYVGETDF-AKGEWCGVELDEPLGKNDGAVAGTRYFQCPPKFGLFAPIHKVIRIGS   79 (84)
T ss_dssp             SCSCCTTCEEEET-TTEEEEEEEEEECSS-SSSEEEEEEESSSCCSBSSEETTEESSCCCTTTEEEEEGGGEEECCC
T ss_pred             ccccccCCEEEEC-CCCeEEEEEeccCCC-CCCeEEEEEeCCCCCcCCCEECCEEeeecCCCeEEEEcHHHeEEccc
Confidence            4569999999996 578999999999999 89999999999999999999999999999999999999999987543

>1whk_A 1700024K14RIK, riken cDNA 1700024K14; structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: b.34.10.1

Probab=99.96  E-value=1.8e-29  Score=187.08  Aligned_cols=77  Identities=30%  Similarity=0.649  Sum_probs=71.2

Q ss_pred             cCCCCcCCEEEEcCCCceeEEEEecccCCCCCCcEEEEEEeCCCCCCCcEECCEEeeecCCCceeeecCCCCccCCCC
Q 028484          121 CSNITVGDRCEVDPGAKRGVVKYVGQAESIAPGFWVGIQYDEPLGKHNGIVKGVRYFECPPLHGAMVRPDKVKVGDYP  198 (208)
Q Consensus       121 ~~~~~vG~rv~v~~~~~~G~vryvG~~~~~~~g~wvGVelde~~GkndGs~~G~rYF~c~~~~G~Fv~~~~v~~g~fp  198 (208)
                      ...++||+||+|....++|||||+|++++ .+|.|+|||||+|.|||||+++|+|||+|+|+||+||||++|++...+
T Consensus        10 ~~~~~vG~rV~V~~~~~~GtVryvG~v~~-~~G~wvGVElDep~GKnDGsv~G~rYF~C~~~~G~Fvr~~~v~~~~~~   86 (91)
T 1whk_A           10 TVKLHEGSQVLLTSSNEMATVRYVGPTDF-ASGIWLGLELRSAKGKNDGAVGDKRYFTCKPNYGVLVRPSRVTYRGIS   86 (91)
T ss_dssp             CCCCCSSCEEEESSSCCEEEECCCEECSS-SSSEEEEEECSSSCSSCCSEETTEECCCCSTTCCCEECGGGEECCCCC
T ss_pred             CccccCCCEEEECCCCeEEEEEEeeeCCC-CCCeEEEEEeCCCCCcCCCEECCEEEeecCCCeEEEEchHHcEEcCCC
Confidence            55799999999973379999999999999 899999999999999999999999999999999999999999886544

>1whl_A Cylindromatosis tumor suppressor CYLD; deubiquitinating enzyme, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.34.10.1

Probab=99.96  E-value=3.6e-29  Score=187.06  Aligned_cols=78  Identities=28%  Similarity=0.495  Sum_probs=70.6

Q ss_pred             cCCCCcCCEEEEc-CC---CceeEEEEecccC---CCCCCcEEEEEEeCC---CCCCCcEECCEEeeecCCCceeeecCC
Q 028484          121 CSNITVGDRCEVD-PG---AKRGVVKYVGQAE---SIAPGFWVGIQYDEP---LGKHNGIVKGVRYFECPPLHGAMVRPD  190 (208)
Q Consensus       121 ~~~~~vG~rv~v~-~~---~~~G~vryvG~~~---~~~~g~wvGVelde~---~GkndGs~~G~rYF~c~~~~G~Fv~~~  190 (208)
                      +..|+||+||+|. ++   .++|||||||+++   + .+|.|+|||||+|   .||||||++|+|||+|+|+||+||||+
T Consensus         5 ~~~~~VG~rV~V~~~~~~~~~~GtVryvG~v~~~~~-~~G~wvGVElDep~~~~GKnDGsv~G~rYF~C~~~~G~Fv~~~   83 (95)
T 1whl_A            5 SSGIDVGCPVKVQLRSGEEKFPGVVRFRGPLLAERT-VSGIFFGVELLEEGRGQGFTDGVYQGKQLFQCDEDCGVFVALD   83 (95)
T ss_dssp             CCCCCSSCEEEEECSSSSCEEEEEEEEECCCCSSSS-CCCCCEEEEECSSSCSCCSSTTEETTEECCCCCTTTEEEECGG
T ss_pred             cccCcCCCEEEEecCCCccceeEEEEEeCccCcccC-CCceEEEEEeCCCcccCCCCCCEECCEEEeecCCCeEEEEcHH
Confidence            4679999999995 23   4899999999998   6 8999999999999   899999999999999999999999999


Q ss_pred             CCccCC-CCC
Q 028484          191 KVKVGD-YPE  199 (208)
Q Consensus       191 ~v~~g~-fp~  199 (208)
                      +|++.+ .|+
T Consensus        84 ~v~~~~~~p~   93 (95)
T 1whl_A           84 KLELIESGPS   93 (95)
T ss_dssp             GEEECCSCSC
T ss_pred             HeEEcCcCCC
Confidence            999984 553

>2z0w_A CAP-Gly domain-containing linker protein 4; alternative splicing, ANK repeat, protein binding, structural genomics, NPPSFA; 2.50A {Homo sapiens}

Probab=99.96  E-value=1.9e-29  Score=188.64  Aligned_cols=75  Identities=36%  Similarity=0.811  Sum_probs=68.0

Q ss_pred             cCCCCcCCEEEEcCCCceeEEEEecccCCCCCCcEEEEEEeCCCCCCCcEECCEEeeecCCCceeeecCCCCccC-CC
Q 028484          121 CSNITVGDRCEVDPGAKRGVVKYVGQAESIAPGFWVGIQYDEPLGKHNGIVKGVRYFECPPLHGAMVRPDKVKVG-DY  197 (208)
Q Consensus       121 ~~~~~vG~rv~v~~~~~~G~vryvG~~~~~~~g~wvGVelde~~GkndGs~~G~rYF~c~~~~G~Fv~~~~v~~g-~f  197 (208)
                      ...++||+||+|. +.++|||||+|++++ .+|.|+|||||+|.|||||+++|+|||+|+|+||+||||++|... +|
T Consensus         8 ~~~~~vG~rV~V~-g~~~GtVryvG~~~~-~~G~wvGVElDep~GKnDGsv~G~rYF~C~p~~G~Fv~~~~v~~~~~~   83 (96)
T 2z0w_A            8 EGELRLGERVLVV-GQRLGTIRFFGTTNF-APGYWYGIELEKPHGKNDGSVGGVQYFSCSPRYGIFAPPSRVQRVTDS   83 (96)
T ss_dssp             ---CCTTCCCCCC-CCCCEEEEEEECCSS-SSSCEEEEEESSSCSSBSSEETTEESSCCCTTSEEEECGGGCCCTTC-
T ss_pred             cccCCCCCEEEEC-CCcEEEEEEeccCCC-CCCeEEEEEeCCCCCCCCCEECCEEeeecCCCeEEEEcHHHceeccch
Confidence            4569999999996 578999999999999 899999999999999999999999999999999999999999986 44

>2coz_A CAP350, centrosome-associated protein 350; microtubule binding, cytoskeleton associated protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.34.10.1

Probab=99.96  E-value=5.9e-29  Score=192.96  Aligned_cols=77  Identities=35%  Similarity=0.817  Sum_probs=71.0

Q ss_pred             hhcCCCCcCCEEEEcCCCceeEEEEecccCCCCCCcEEEEEEeCCCCCCCcEECCEEeeecCCCceeeecCCCCccCCCC
Q 028484          119 DLCSNITVGDRCEVDPGAKRGVVKYVGQAESIAPGFWVGIQYDEPLGKHNGIVKGVRYFECPPLHGAMVRPDKVKVGDYP  198 (208)
Q Consensus       119 ~~~~~~~vG~rv~v~~~~~~G~vryvG~~~~~~~g~wvGVelde~~GkndGs~~G~rYF~c~~~~G~Fv~~~~v~~g~fp  198 (208)
                      +.+..++||+||.|. +.++|||||||++++ .+|.|+|||||+|.||||||++|+|||+|+|+||+||||++|.  +||
T Consensus        27 ~~~~~l~VG~RV~V~-g~~~GtVRyvG~v~~-~~G~WvGVELDeP~GKnDGsv~G~rYF~C~p~~GiFVr~~kv~--~~p  102 (122)
T 2coz_A           27 DELFDFHIGDRVLIG-NVQPGILRFKGETSF-AKGFWAGVELDKPEGNNNGTYDGIAYFECKEKHGIFAPPQKIS--HIP  102 (122)
T ss_dssp             CSCSSCCTTEEEEET-TTEEEEEEEEEECSS-SSSEEEEEEESSTTSSBCSEETTEECCCCCSSCEEEECGGGEE--CCC
T ss_pred             cccccCcCCCEEEEC-CCcEEEEEEecccCC-CCCeEEEEEeCCCCCccCCEECCEEeeecCCCcEEEecHHHCc--cCC
Confidence            445679999999997 579999999999999 8999999999999999999999999999999999999999998  455


Q ss_pred             C
Q 028484          199 E  199 (208)
Q Consensus       199 ~  199 (208)
                      +
T Consensus       103 e  103 (122)
T 2coz_A          103 E  103 (122)
T ss_dssp             T
T ss_pred             c
Confidence            3

>1ixd_A Cylindromatosis tumour-suppressor CYLD; structural genomics, riken structural genomics/proteomics initiative, RSGI, antitumor protein; NMR {Homo sapiens} SCOP: b.34.10.1

Probab=99.96  E-value=6.8e-29  Score=188.12  Aligned_cols=81  Identities=25%  Similarity=0.507  Sum_probs=74.4

Q ss_pred             cCCCCcCCEEEEcC-CCceeEEEEecccCCCCCCcEEEEEE-eCCCCCCCcEECCEEeeecCCCceeeecCCCCccC-CC
Q 028484          121 CSNITVGDRCEVDP-GAKRGVVKYVGQAESIAPGFWVGIQY-DEPLGKHNGIVKGVRYFECPPLHGAMVRPDKVKVG-DY  197 (208)
Q Consensus       121 ~~~~~vG~rv~v~~-~~~~G~vryvG~~~~~~~g~wvGVel-de~~GkndGs~~G~rYF~c~~~~G~Fv~~~~v~~g-~f  197 (208)
                      ...|+||+||+|.. +.++|||||||++++ .+|.|+|||| |+|.|||||+++|+|||+|+|+||+|||+++|..+ .|
T Consensus        15 ~~~l~VG~RV~V~~~~~~~GtVryvG~v~~-~~G~wvGVEldDep~GKnDGsv~G~rYF~C~p~~G~FVr~~~v~~~~rf   93 (104)
T 1ixd_A           15 SHGLEVGSLAEVKENPPFYGVIRWIGQPPG-LNEVLAGLELEDECAGCTDGTFRGTRYFTCALKKALFVKLKSCRPDSRF   93 (104)
T ss_dssp             SSCCCTTSEEEECSSSCCCEEEEEEECCSS-SCCCEEEEEESSCCTTCBSSEETTEECSCCCTTCBEEEEGGGEEECCTT
T ss_pred             CcccccCCEEEECcCCCcEEEEEEecccCC-CCceEEEEEecCCCCCCCCCEECCEEeeecCCCcEEEEcHHHceecccc
Confidence            45799999999972 368999999999999 8999999999 89999999999999999999999999999999998 69


Q ss_pred             CCCCC
Q 028484          198 PERDP  202 (208)
Q Consensus       198 p~~d~  202 (208)
                      ..++.
T Consensus        94 ~~~~~   98 (104)
T 1ixd_A           94 ASLQP   98 (104)
T ss_dssp             CCCCS
T ss_pred             ccCCC
Confidence            87664

>2coy_A Dynactin-1; microtubule binding, cytoskeleton associated protein, P150- glued, DAP-150, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.34.10.1

Probab=99.95  E-value=6.8e-29  Score=190.23  Aligned_cols=76  Identities=41%  Similarity=0.711  Sum_probs=70.6

Q ss_pred             hcCCCCcCCEEEEcCCCceeEEEEecccCCCCCCcEEEEEEeCCCCCCCcEECCEEeeecCCCceeeecCCCCccCC
Q 028484          120 LCSNITVGDRCEVDPGAKRGVVKYVGQAESIAPGFWVGIQYDEPLGKHNGIVKGVRYFECPPLHGAMVRPDKVKVGD  196 (208)
Q Consensus       120 ~~~~~~vG~rv~v~~~~~~G~vryvG~~~~~~~g~wvGVelde~~GkndGs~~G~rYF~c~~~~G~Fv~~~~v~~g~  196 (208)
                      .+..++||+||.|....++|||||||++++ .+|.|+|||||+|.|||||+++|+|||+|+|+||+||||++|++.+
T Consensus        30 ~~~~l~VG~RV~V~~~g~~GtVRyvG~v~~-~~G~wvGVElDep~GKnDGsv~G~rYF~C~p~~GiFVr~~~v~~~~  105 (112)
T 2coy_A           30 SARPLRVGSRVEVIGKGHRGTVAYVGATLF-ATGKWVGVILDEAKGKNDGTVQGRKYFTCDEGHGIFVRQSQIQVFE  105 (112)
T ss_dssp             SCCCCCTTCEEEETTTCCEEEEEEEECCSS-SSSCEEEEEESSSCSSBSSEETTEECSCCCTTTEEEECGGGEEECC
T ss_pred             ccccCCCCCEEEECCCCeEEEEEEeeecCC-CCCcEEEEEECCCCCCCCCEECCEEeeecCCCeEEEEchHHeEEcC
Confidence            346799999999963468999999999999 8999999999999999999999999999999999999999999874

>2cp0_A Clipr-59 protein, clipr59; microtubule binding, cytoskeleton associated protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.34.10.1

Probab=99.95  E-value=4e-29  Score=186.54  Aligned_cols=73  Identities=42%  Similarity=0.863  Sum_probs=68.8

Q ss_pred             cCCCCcCCEEEEcCCCceeEEEEecccCCCCCCcEEEEEEeCCCCCCCcEECCEEeeecCCCceeeecCCCCccC
Q 028484          121 CSNITVGDRCEVDPGAKRGVVKYVGQAESIAPGFWVGIQYDEPLGKHNGIVKGVRYFECPPLHGAMVRPDKVKVG  195 (208)
Q Consensus       121 ~~~~~vG~rv~v~~~~~~G~vryvG~~~~~~~g~wvGVelde~~GkndGs~~G~rYF~c~~~~G~Fv~~~~v~~g  195 (208)
                      +..++||+||+|. +.++|||||+|++++ .+|.|+|||||+|.|||||+++|+|||+|+|+||+|||+++|...
T Consensus        14 ~~~~~vG~RV~V~-g~~~GtVryvG~v~~-~~G~wvGVelDep~GKnDGsv~G~rYF~C~~~~G~Fv~~~kv~~~   86 (95)
T 2cp0_A           14 ALGLRLGDRVLLD-GQKTGTLRFCGTTEF-ASGQWVGVELDEPEGKNDGSVGGVRYFICPPKQGLFASVSKISKA   86 (95)
T ss_dssp             HHTCCTTCEEEET-TTEEEEEEEEECCSS-SCSCEEEEEESSSCCSBCSEETTEECCCCSSSCEEEECGGGEEEC
T ss_pred             ccCCCCCCEEEEC-CCCeEEEEEecccCC-CCCcEEEEEecCCCCcCCCEECCEEeeecCCCcEEEEcHHHeecC
Confidence            4569999999996 578999999999999 899999999999999999999999999999999999999999874

>1whj_A 1700024K14RIK, riken cDNA 1700024K14; structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: b.34.10.1

Probab=99.95  E-value=6.9e-29  Score=187.32  Aligned_cols=77  Identities=38%  Similarity=0.697  Sum_probs=71.0

Q ss_pred             cCCCCcCCEEEEcCCCceeEEEEecccCCCCCCcEEEEEEeCCCCCCCcEECCEEeeecCCCceeeecCCCCccC-CCCC
Q 028484          121 CSNITVGDRCEVDPGAKRGVVKYVGQAESIAPGFWVGIQYDEPLGKHNGIVKGVRYFECPPLHGAMVRPDKVKVG-DYPE  199 (208)
Q Consensus       121 ~~~~~vG~rv~v~~~~~~G~vryvG~~~~~~~g~wvGVelde~~GkndGs~~G~rYF~c~~~~G~Fv~~~~v~~g-~fp~  199 (208)
                      +..++||+||+|. +.++|||||+|++++ .+|.|+|||||+|.|||||+++|+|||+|+|+||+||++++|..- ++++
T Consensus        22 ~~~~~vG~RV~V~-g~~~GtVryvG~v~~-~~G~wvGVElDep~GKnDGsv~G~rYF~C~p~~G~Fv~~~kv~~~~~~~~   99 (102)
T 1whj_A           22 SLGLKLGDRVVIA-GQKVGTLRFCGTTEF-ASGQWAGIELDEPEGKNNGSVGRVQYFKCAPKYGIFAPLSKISKLKDSGP   99 (102)
T ss_dssp             HHTCCTTCEEEET-TTEEEEEEEEEECSS-SCSEEEEEEESSSCCSBSSEETTEECCCCCTTTEEEEEGGGEEESSSCCC
T ss_pred             hhcCcCCCEEEEC-CCCEEEEEEeeecCC-CCCeEEEEEeCCCCCccCCEECCEEecccCCCeEEEEeHHHccccCCCCC
Confidence            4479999999996 578999999999999 899999999999999999999999999999999999999999875 5554

>2cow_A Kinesin-like protein KIF13B; microtubule binding, cytoskeleton associated protein, KIAA0639, kinesin-like protein gakin, structural genomics; NMR {Homo sapiens} SCOP: b.34.10.1

Probab=99.95  E-value=1.1e-28  Score=185.65  Aligned_cols=78  Identities=38%  Similarity=0.752  Sum_probs=71.7

Q ss_pred             hhcCCCCcCCEEEEcCCCceeEEEEecccCCCCCCcEEEEEEeCCCCCCCcEECCEEeeecCCCceeeecCCCCccC-CC
Q 028484          119 DLCSNITVGDRCEVDPGAKRGVVKYVGQAESIAPGFWVGIQYDEPLGKHNGIVKGVRYFECPPLHGAMVRPDKVKVG-DY  197 (208)
Q Consensus       119 ~~~~~~~vG~rv~v~~~~~~G~vryvG~~~~~~~g~wvGVelde~~GkndGs~~G~rYF~c~~~~G~Fv~~~~v~~g-~f  197 (208)
                      .....|+||+||.|. +.++|||||+|++++ .+|.|+|||||+|.|||||+++|+|||+|+|+||+|||+++|..- ..
T Consensus        19 ~~~~~l~vG~rV~V~-g~~~GtVryvG~~~~-~~G~wvGVElDep~GKnDGsv~G~rYF~C~p~~GiFvr~~~v~~~~~~   96 (100)
T 2cow_A           19 EVPEWLREGEFVTVG-AHKTGVVRYVGPADF-QEGTWVGVELDLPSGKNDGSIGGKQYFRCNPGYGLLVRPSRVRRATSG   96 (100)
T ss_dssp             CCCSSCCTTCEEECS-SSCEEEEEEEECCSS-SSSCEEEEECSSSCCSCSSEETTEECCCSCTTCCEEECGGGCEECCCC
T ss_pred             cCCccccCCCEEEEC-CCcEEEEEEeeeCCC-CCCeEEEEEeCCCCCcCCCEECCEEeeecCCCeEEEecHHHeeECCCC
Confidence            445679999999996 579999999999998 899999999999999999999999999999999999999999886 45


Q ss_pred             C
Q 028484          198 P  198 (208)
Q Consensus       198 p  198 (208)
                      |
T Consensus        97 p   97 (100)
T 2cow_A           97 P   97 (100)
T ss_dssp             S
T ss_pred             C
Confidence            5

>2cp5_A Restin; microtubule binding, cytoskeleton associated protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.34.10.1

Probab=99.95  E-value=2.3e-28  Score=193.54  Aligned_cols=75  Identities=44%  Similarity=0.956  Sum_probs=70.7

Q ss_pred             hhcCCCCcCCEEEEcCCCceeEEEEecccCCCCCCcEEEEEEeCCCCCCCcEECCEEeeecCCCceeeecCCCCccC
Q 028484          119 DLCSNITVGDRCEVDPGAKRGVVKYVGQAESIAPGFWVGIQYDEPLGKHNGIVKGVRYFECPPLHGAMVRPDKVKVG  195 (208)
Q Consensus       119 ~~~~~~~vG~rv~v~~~~~~G~vryvG~~~~~~~g~wvGVelde~~GkndGs~~G~rYF~c~~~~G~Fv~~~~v~~g  195 (208)
                      +.+..|+||+||+|. +.++|+|||||++++ ..|.|+|||||+|.|||||+++|+|||+|+++||+|||+++|..+
T Consensus        60 ~~~~~l~VG~RV~V~-G~~~GtVRyvG~v~~-~~G~WvGVELDeP~GKnDGsv~G~rYF~C~p~~GiFVrp~kv~~~  134 (141)
T 2cp5_A           60 EFVDDFRVGERVWVN-GNKPGFIQFLGETQF-APGQWAGIVLDEPIGKNDGSVAGVRYFQCEPLKGIFTRPSKLTRK  134 (141)
T ss_dssp             CCCCCCCTTCEEEET-TSCEEEEEEEEECSS-SSSEEEEEEESSSCCSCBSEETTEESSCCCTTTEEEECGGGEESS
T ss_pred             hhhhcCcCCCEEEEC-CCcEEEEEEeeecCC-CCCcEEEEEeCCCCCccCCEECCEEeeecCCCcEEEechHHeeec
Confidence            456779999999997 678999999999999 899999999999999999999999999999999999999999886

>1whm_A Cylindromatosis tumor suppressor CYLD; deubiquitinating enzyme, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.34.10.1

Probab=99.94  E-value=1.3e-27  Score=176.49  Aligned_cols=73  Identities=18%  Similarity=0.393  Sum_probs=65.3

Q ss_pred             hcCCCCcCCEEEEcCC--CceeEEEEecccCCC-CCCcEEEEEEeCCCCCCCcEECCEEee-ecCCCceeeecCCCC
Q 028484          120 LCSNITVGDRCEVDPG--AKRGVVKYVGQAESI-APGFWVGIQYDEPLGKHNGIVKGVRYF-ECPPLHGAMVRPDKV  192 (208)
Q Consensus       120 ~~~~~~vG~rv~v~~~--~~~G~vryvG~~~~~-~~g~wvGVelde~~GkndGs~~G~rYF-~c~~~~G~Fv~~~~v  192 (208)
                      .+..|+||+||+|.++  .+||||||||++++. ..|+|||||||||.||||||++|+||| .|+++||+||++..+
T Consensus         6 ~~~~i~VG~Rc~V~~~~~~rrGtVrfvG~~~~~~~~G~wVGVelDEP~GknDGsv~G~ryF~~c~~~~g~fV~~~d~   82 (92)
T 1whm_A            6 SGPPLEINSRVSLKVGETIESGTVIFCDVLPGKESLGYFVGVDMDNPIGNWDGRFDGVQLCSFACVESTILLHINDI   82 (92)
T ss_dssp             CSCSSCTTCEEEEEETTEEEEEEEEEEECCTTCTTTCCEEEEEESSSCCCCCSEETTEESCSSCCTTTEEEEEGGGE
T ss_pred             cccCccccCeEEEcCCCceeeEEEEEEecCCCcCCCCeEEEEEcCCCCCCCCCeECCEEeccccCCCcceEcccccC
Confidence            3557999999999744  489999999999873 369999999999999999999999999 999999999987765

>4b6w_A Tubulin-specific chaperone; CAP-Gly, ubiquitin-like; HET: MSE; 2.35A {Trypanosoma brucei brucei strain 927}

Probab=99.75  E-value=1.3e-18  Score=127.28  Aligned_cols=62  Identities=31%  Similarity=0.588  Sum_probs=58.9

Q ss_pred             CCHHHHHHhcccccccCCCCeEEEEEcCCCCeeeecCCCCCcCCCCCCCCCcEEEEecCCCC
Q 028484            1 MSVESVKDKLWRKCGTSVNSMSLELYDDTNTKVAALTDNSRPLGFYSPLQGYRLHVIDLDPS   62 (208)
Q Consensus         1 ~TI~~LK~KLe~itGi~p~~m~L~l~~~~g~~~~~l~dd~~~L~~y~i~~g~~IhV~D~~p~   62 (208)
                      +||++||+||+.++||||++|+|++++.++.....+.+|+++|++|++++|++|||+|++|+
T Consensus        25 ~TI~~lK~ki~~~~Gip~~~QrLi~~~~~~~~~g~~l~d~~tL~~Y~i~~g~~ihlvd~~P~   86 (86)
T 4b6w_A           25 QTIESIKENVFTHFATPPEYMQLQLIDDRGITIEKNMANDKQLGYYQCRDEFVIHVVDLQPS   86 (86)
T ss_dssp             SBHHHHHHHHHTTSCCCGGGEEEEEECTTSCEEESSCCTTSBGGGGTCCTTCEEEEEECCCC
T ss_pred             CcHHHHHHHHHHHHCCCHHHEEEEEecCCCCceeeEcCCCCCHHHCCCCCCCEEEEEeCCCC
Confidence            69999999999999999999999999888888888889999999999999999999999995

>2kj6_A Tubulin folding cofactor B; methods development, NESG, solution PSI-2, structural genomics, protein structure initiative; NMR {Arabidopsis thaliana}

Probab=99.64  E-value=5.8e-17  Score=121.05  Aligned_cols=61  Identities=75%  Similarity=1.347  Sum_probs=56.1

Q ss_pred             CCHHHHHHhcccccccCCCCeEEEEEcCCCCeeeecCCCCCcCCCCCCCCCcEEEEecCCC
Q 028484            1 MSVESVKDKLWRKCGTSVNSMSLELYDDTNTKVAALTDNSRPLGFYSPLQGYRLHVIDLDP   61 (208)
Q Consensus         1 ~TI~~LK~KLe~itGi~p~~m~L~l~~~~g~~~~~l~dd~~~L~~y~i~~g~~IhV~D~~p   61 (208)
                      +||++||+||+.+|||||++|+|+++..+|+.++.|.+|+++|++|++++|++|||+|++|
T Consensus        37 ~TV~~LK~kIe~~~Gip~~~QrLi~~g~~g~~~~~L~~D~~tL~~Y~I~~g~~Ihlvd~~p   97 (97)
T 2kj6_A           37 MSVEAVKEKLWKKCGTSVNSMALELYDDSGSKVAVLSDDSRPLGFFSPFDGFRLHIIDLDP   97 (97)
T ss_dssp             CCHHHHHHHHHHHHCCCTTSEEEEEECSSSCBCCCSSGGGSCHHHHCCCSCCEEEEEECCC
T ss_pred             ChHHHHHHHHHHHHCcCHHHeEEEEecCCCcccceecCCcCCHHHCCCCCCCEEEEEeCCC
Confidence            6999999999999999999999999876666666677899999999999999999999987

>1wjn_A Tubulin-folding protein TBCE; ubiquitin-like domain, progressive motor neuropathy, structural genomics; NMR {Mus musculus} SCOP: d.15.1.1

Probab=99.61  E-value=9.1e-16  Score=113.60  Aligned_cols=63  Identities=32%  Similarity=0.333  Sum_probs=56.8

Q ss_pred             CCHHHHHHhcccccccCCCCeEEEEEcC-CCCeeeecCCCCCcCCCCCCCCCcEEEEecCCCCC
Q 028484            1 MSVESVKDKLWRKCGTSVNSMSLELYDD-TNTKVAALTDNSRPLGFYSPLQGYRLHVIDLDPSS   63 (208)
Q Consensus         1 ~TI~~LK~KLe~itGi~p~~m~L~l~~~-~g~~~~~l~dd~~~L~~y~i~~g~~IhV~D~~p~s   63 (208)
                      +||++||.||+.+||+||+.|+|.+++. .+.....|++|.++|++|++++|++|||+|++|+|
T Consensus        33 ~TV~~LK~~i~~~~gip~~~q~L~~~~~~~~~~~~~L~~d~~~L~~y~i~~G~~I~V~d~~p~s   96 (97)
T 1wjn_A           33 MTVQKVKGLLSRLLKVPVSELLLSYESSKMPGREIELENDLQPLQFYSVENGDCLLVRWSGPSS   96 (97)
T ss_dssp             SBHHHHHHHHHTTTTCCTTTCEEEEECTTSCSCEEECCCSSSBSGGGTCCTTCEEEEECCSSCC
T ss_pred             CCHHHHHHHHHHHHCCChhHeEEEEEcCCCCceeeccCCCcccHhhcCCCCCCEEEEEecCCCC
Confidence            6999999999999999999999999864 23345668999999999999999999999999976

>1v6e_A Cytoskeleton-associated protein 1; tubulin-specific chaperone B, tubulin folding cofactor B, microtubule, ubiquitin-like fold, structural genomics; NMR {Mus musculus} SCOP: d.15.1.1

Probab=99.61  E-value=9.7e-16  Score=113.14  Aligned_cols=66  Identities=32%  Similarity=0.437  Sum_probs=59.4

Q ss_pred             CCHHHHHHhcccccccCCCCeEEEEEcCCCCeeeecCCCCCcCCCCCCCCCcEEEEecCCCCCccC
Q 028484            1 MSVESVKDKLWRKCGTSVNSMSLELYDDTNTKVAALTDNSRPLGFYSPLQGYRLHVIDLDPSSVTS   66 (208)
Q Consensus         1 ~TI~~LK~KLe~itGi~p~~m~L~l~~~~g~~~~~l~dd~~~L~~y~i~~g~~IhV~D~~p~s~~~   66 (208)
                      +||++||+||+.++||||++|+|.+...+|+.+..|.+|+++|++|++++|++|||+|++|+++++
T Consensus        29 ~TV~~lK~ki~~~~gip~~~qrL~~~~~~g~~~~~l~~D~~tL~~y~i~~g~~l~v~d~~P~~~~~   94 (95)
T 1v6e_A           29 LTIAEFKCKLELVVGSPASCMELELYGADDKFYSKLDQEDALLGSYPVDDGCRIHVIDHSGSGPSS   94 (95)
T ss_dssp             SBHHHHHHHHHHHTCSCTTTCBCEEECSSSCEEEECCCSSSBTTSSSCCTTCEEEEBCCSCCSSSC
T ss_pred             CHHHHHHHHHHHHHCCCHHHeEEEEeCCCCccccccCCCcCCHhHCCCCCCCEEEEEECCcccccC
Confidence            589999999999999999999999986556766667789999999999999999999999988764

>2kjr_A CG11242; UBL, ubiquitin, ubiquitin-like, structural genomics, PSI-2, protein structure initiative; NMR {Drosophila melanogaster}

Probab=99.48  E-value=1.4e-14  Score=107.55  Aligned_cols=57  Identities=32%  Similarity=0.603  Sum_probs=51.6

Q ss_pred             CCHHHHHHhcccccccCCCCeEEEEEcCCCCeeeecCCCCCcCCCCCCCCCcEEEEec
Q 028484            1 MSVESVKDKLWRKCGTSVNSMSLELYDDTNTKVAALTDNSRPLGFYSPLQGYRLHVID   58 (208)
Q Consensus         1 ~TI~~LK~KLe~itGi~p~~m~L~l~~~~g~~~~~l~dd~~~L~~y~i~~g~~IhV~D   58 (208)
                      +||++||+||+.+|||||++|+|.+.+ +|+.+..|.+|+++|++|++++|++|||+|
T Consensus        38 ~TV~~LK~kI~~~~GiP~~~QrL~~~~-~g~~~~~L~~D~~tL~~Y~i~~gstihlvD   94 (95)
T 2kjr_A           38 LTVAQLKTKLEILTGGCAGTMKVQVFK-GDTCVSTMDNNDAQLGYYANSDGLRLHVVD   94 (95)
T ss_dssp             CBHHHHHHHHHHHHCSCTTTEEEEEEE-TTEEEEECCCTTSBHHHHCCSSSCEEEEEE
T ss_pred             CHHHHHHHHHHHHHCcCHHHeEEEEec-CCcccceeCCCCCCHhHCCcCCCCEEEEEC
Confidence            599999999999999999999999975 355555677899999999999999999999

>1wxv_A BAG-family molecular chaperone regulator-1; structural genomics, apoptosis, riken structural genomics/proteomics initiative, RSGI, NPPSFA; NMR {Homo sapiens} SCOP: d.15.1.1

Probab=98.98  E-value=2.3e-10  Score=83.19  Aligned_cols=56  Identities=18%  Similarity=0.198  Sum_probs=49.3

Q ss_pred             CCHHHHHHhcccccccCCCCeEEEEEcCCCCeeeecCCCCCcCCCCCCCCCcEEEEecCCCC
Q 028484            1 MSVESVKDKLWRKCGTSVNSMSLELYDDTNTKVAALTDNSRPLGFYSPLQGYRLHVIDLDPS   62 (208)
Q Consensus         1 ~TI~~LK~KLe~itGi~p~~m~L~l~~~~g~~~~~l~dd~~~L~~y~i~~g~~IhV~D~~p~   62 (208)
                      +||.+||++|+..+|+||+.|+|.+   .|+.   |.|++++|++|++++|++|||++..+.
T Consensus        32 ~TV~~LK~~i~~~~gip~~~qrL~~---~Gk~---L~D~~~~L~~~~i~~g~~i~l~~~~~~   87 (92)
T 1wxv_A           32 PVVQDLAQVVEEVIGVPQSFQKLIF---KGKS---LKEMETPLSALGIQDGCRVMLIGKKNS   87 (92)
T ss_dssp             CBHHHHHHHHHHHTCCCTTTCEEEE---TTEE---ECCSSSBHHHHTCCSSEEEEEESCCSC
T ss_pred             CcHHHHHHHHHHHHCcCHHHEEEEE---CCee---cCCCcccHHHCCCCCCCEEEEEecCCC
Confidence            4899999999999999999999987   4665   556688999999999999999997653

>3m63_B Ubiquitin domain-containing protein DSK2; armadillo-like repeats, UBL conjugation pathway, nucleus, phosphoprotein; HET: 1PE; 2.40A {Saccharomyces cerevisiae}

Probab=98.93  E-value=7.7e-10  Score=82.41  Aligned_cols=54  Identities=19%  Similarity=0.321  Sum_probs=48.1

Q ss_pred             CCHHHHHHhcccccccCCCCeEEEEEcCCCCeeeecCCCCCcCCCCCCCCCcEEEEecCCC
Q 028484            1 MSVESVKDKLWRKCGTSVNSMSLELYDDTNTKVAALTDNSRPLGFYSPLQGYRLHVIDLDP   61 (208)
Q Consensus         1 ~TI~~LK~KLe~itGi~p~~m~L~l~~~~g~~~~~l~dd~~~L~~y~i~~g~~IhV~D~~p   61 (208)
                      .||.+||++|+..+|+||+.|+|.+   .|+.   | +|+.+|++|++++|++|||+..+|
T Consensus        48 ~TV~~LK~~I~~~~gip~~~QrLi~---~Gk~---L-~D~~tL~~~gI~~g~tI~lv~~~P  101 (101)
T 3m63_B           48 STVLQFKEAINKANGIPVANQRLIY---SGKI---L-KDDQTVESYHIQDGHSVHLVKSQP  101 (101)
T ss_dssp             SBHHHHHHHHHHHHSCCSTTCCEEE---TTEE---C-CTTSBTTTTTCCTTEEEEECCCC-
T ss_pred             CCHHHHHHHHHHHHCcChHHEEEEE---CCEE---C-CCcCcHHHCCCCCCCEEEEEeCCC
Confidence            4899999999999999999999998   4654   3 678999999999999999998876

>2bwf_A Ubiquitin-like protein DSK2; signaling protein, UBA, signaling proteins; 1.15A {Saccharomyces cerevisiae} SCOP: d.15.1.1 PDB: 2bwe_S

Probab=98.91  E-value=9.3e-10  Score=76.49  Aligned_cols=53  Identities=17%  Similarity=0.279  Sum_probs=46.8

Q ss_pred             CCHHHHHHhcccccccCCCCeEEEEEcCCCCeeeecCCCCCcCCCCCCCCCcEEEEecCC
Q 028484            1 MSVESVKDKLWRKCGTSVNSMSLELYDDTNTKVAALTDNSRPLGFYSPLQGYRLHVIDLD   60 (208)
Q Consensus         1 ~TI~~LK~KLe~itGi~p~~m~L~l~~~~g~~~~~l~dd~~~L~~y~i~~g~~IhV~D~~   60 (208)
                      .||.+||++|+..+|+||+.|+|.+   .|+.   | +|+.+|++|++++|++|||++..
T Consensus        24 ~tV~~LK~~i~~~~~i~~~~qrL~~---~gk~---L-~d~~tL~~~~i~~g~~i~l~~~~   76 (77)
T 2bwf_A           24 STVLQFKEAINKANGIPVANQRLIY---SGKI---L-KDDQTVESYHIQDGHSVHLVKSQ   76 (77)
T ss_dssp             CBHHHHHHHHHHHHCCCGGGEEEEE---TTEE---C-CTTSBTGGGTCCTTCEEEEEECC
T ss_pred             CcHHHHHHHHHHHhCCCHHHEEEEE---CCeE---c-CCCCCHHHcCCCCCCEEEEEEcC
Confidence            4899999999999999999999987   4654   4 56799999999999999999853

>1uel_A HHR23B, UV excision repair protein RAD23 homolog B; UBL, UIM, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.1

Probab=98.91  E-value=1.7e-09  Score=79.18  Aligned_cols=59  Identities=19%  Similarity=0.208  Sum_probs=51.5

Q ss_pred             CCHHHHHHhcccc---cccCCCCeEEEEEcCCCCeeeecCCCCCcCCCCCCCCCcEEEEecCCCCCccC
Q 028484            1 MSVESVKDKLWRK---CGTSVNSMSLELYDDTNTKVAALTDNSRPLGFYSPLQGYRLHVIDLDPSSVTS   66 (208)
Q Consensus         1 ~TI~~LK~KLe~i---tGi~p~~m~L~l~~~~g~~~~~l~dd~~~L~~y~i~~g~~IhV~D~~p~s~~~   66 (208)
                      .||.+||++|+..   +|+||+.|+|.+   .|+.   | +|+.+|++|++++|++|||+...|.+.+.
T Consensus        21 ~TV~~LK~~I~~~~~~~gip~~~qrLi~---~Gk~---L-~D~~tL~~ygI~~g~~i~l~~~~~~~~~~   82 (95)
T 1uel_A           21 ETVKALKEKIESEKGKDAFPVAGQKLIY---AGKI---L-NDDTALKEYKIDEKNFVVVMVTKPKAVST   82 (95)
T ss_dssp             SBHHHHHHHHHHHHCTTTCCTTTEEEEE---TTEE---C-CTTSBGGGGTCCSSSEEEEEESSCCCCCC
T ss_pred             CHHHHHHHHHHhhcccCCCChhhEEEEE---CCEE---C-CCcCcHHHCCCCCCCEEEEEEeCCCCCCC
Confidence            4899999999999   999999999987   4654   4 56799999999999999999998766544

>2wyq_A HHR23A, UV excision repair protein RAD23 homolog A; DNA binding protein, DNA excision repair, proteasomal degrad polyubiquitin; 1.65A {Homo sapiens} PDB: 1p98_A 1p9d_U 1p1a_A

Probab=98.90  E-value=8.7e-10  Score=78.31  Aligned_cols=55  Identities=16%  Similarity=0.128  Sum_probs=46.8

Q ss_pred             CCHHHHHHhcccc---cccCCCCeEEEEEcCCCCeeeecCCCCCcCCCCCCCCCcEEEEecCCCC
Q 028484            1 MSVESVKDKLWRK---CGTSVNSMSLELYDDTNTKVAALTDNSRPLGFYSPLQGYRLHVIDLDPS   62 (208)
Q Consensus         1 ~TI~~LK~KLe~i---tGi~p~~m~L~l~~~~g~~~~~l~dd~~~L~~y~i~~g~~IhV~D~~p~   62 (208)
                      .||.+||++|+..   +|+||+.|+|.+   .|+.   | +|+++|++|++++|++|||+...|.
T Consensus        26 ~TV~~lK~~i~~~~~~~gip~~~qrLi~---~Gk~---L-~D~~tL~~~~i~~g~~i~l~~~~~~   83 (85)
T 2wyq_A           26 ETVKVLKEKIEAEKGRDAFPVAGQKLIY---AGKI---L-SDDVPIRDYRIDEKNFVVVMVTKTK   83 (85)
T ss_dssp             SBHHHHHHHHHHHHCTTTCCGGGEEEEE---TTEE---C-CTTSBGGGGCCCTTSEEEEEEC---
T ss_pred             CCHHHHHHHHHhhccccCCCHHHeEEEE---CCEE---C-cCCCCHHHcCCCCCCEEEEEEcCCC
Confidence            4899999999997   999999999987   4654   4 5789999999999999999998764

>1wf9_A NPL4 family protein; beta-grAsp fold like domain, hypothetical protein, structural genomics, NPPSFA; NMR {Arabidopsis thaliana} SCOP: d.15.1.1

Probab=98.90  E-value=3.8e-10  Score=84.87  Aligned_cols=63  Identities=8%  Similarity=0.107  Sum_probs=50.2

Q ss_pred             CCHHHHHHhcccccccCCCCeEEEEEcC--CCC------eeeecCCCCCcCCCCCCCCCcEEEEecCCCCC
Q 028484            1 MSVESVKDKLWRKCGTSVNSMSLELYDD--TNT------KVAALTDNSRPLGFYSPLQGYRLHVIDLDPSS   63 (208)
Q Consensus         1 ~TI~~LK~KLe~itGi~p~~m~L~l~~~--~g~------~~~~l~dd~~~L~~y~i~~g~~IhV~D~~p~s   63 (208)
                      +||.+||+||+.++||||++|+|.+...  .++      .++.+.+|.++|++|++++|++|||++.....
T Consensus        28 ~Tv~~LK~kI~~~~gip~~~QrL~~~~~~~~~k~~~~~~~l~~~l~d~~tL~~~gi~~G~~L~l~~~~~~~   98 (107)
T 1wf9_A           28 ITVSQLKTLIQDQLQIPIHNQTLSTNRNLLLAKSPSDFLAFTDMADPNLRISSLNLAHGSMVYLAYEGERT   98 (107)
T ss_dssp             SBHHHHHHHHHHHSCCCTTTCCCBSSGGGGTCCSHHHHTTCCSSCCTTCBGGGTCCCTTCEEECCCSSCCC
T ss_pred             CcHHHHHHHHHHHhCcCcccCEEEECCccccccCccccccccccCCCCCCHHHCCCCCCCEEEEEeCCCCc
Confidence            5899999999999999999999998522  000      22223688999999999999999999975433

>3phx_B Ubiquitin-like protein ISG15; OTU domain, DE-ubiquitinase, DE-isgylase, hydrolase-protein complex; 1.60A {Homo sapiens}

Probab=98.89  E-value=1e-09  Score=77.16  Aligned_cols=50  Identities=18%  Similarity=0.204  Sum_probs=45.2

Q ss_pred             CCHHHHHHhcccccccCCCCeEEEEEcCCCCeeeecCCCCCcCCCCCCCCCcEEEEe
Q 028484            1 MSVESVKDKLWRKCGTSVNSMSLELYDDTNTKVAALTDNSRPLGFYSPLQGYRLHVI   57 (208)
Q Consensus         1 ~TI~~LK~KLe~itGi~p~~m~L~l~~~~g~~~~~l~dd~~~L~~y~i~~g~~IhV~   57 (208)
                      .||.+||++|+..+|+||+.|+|.+   .|+.   | +|+.+|++|++++|++||++
T Consensus        25 ~tV~~lK~~i~~~~gip~~~qrL~~---~G~~---L-~d~~tL~~~~i~~~~~l~l~   74 (79)
T 3phx_B           25 QTVAHLKQQVSGLEGVQDDLFWLTF---EGKP---L-EDQLPLGEYGLKPLSTVFMN   74 (79)
T ss_dssp             SBHHHHHHHHHHHHTCCGGGEEEEE---TTEE---C-CTTSBGGGGTCCTTCEEEEE
T ss_pred             ChHHHHHHHHHhhcCCCHHHEEEEE---CCEE---C-CCCCcHHHCCCCCCCEEEEE
Confidence            4899999999999999999999998   5655   3 67899999999999999997

>1v5o_A 1700011N24RIK protein; hypothetical protein, ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1

Probab=98.88  E-value=8.6e-10  Score=81.99  Aligned_cols=57  Identities=16%  Similarity=0.207  Sum_probs=49.4

Q ss_pred             CCHHHHHHhcccccccCCCCeEEEEEcCCCCeeeecCCCCCcCCCCCCCCCcEEEEecCCCCC
Q 028484            1 MSVESVKDKLWRKCGTSVNSMSLELYDDTNTKVAALTDNSRPLGFYSPLQGYRLHVIDLDPSS   63 (208)
Q Consensus         1 ~TI~~LK~KLe~itGi~p~~m~L~l~~~~g~~~~~l~dd~~~L~~y~i~~g~~IhV~D~~p~s   63 (208)
                      +||.+||++|+..+||||+.|+|.+   .|+.   |.|+.++|++|++++|++|||+......
T Consensus        32 ~TV~~LK~~I~~~~gip~~~qrL~~---~gk~---L~D~~~tL~~ygI~~g~~l~l~~~~~gg   88 (102)
T 1v5o_A           32 FELSNFRVLCELESGVPAEEAQIVY---MEQL---LTDDHCSLGSYGLKDGDMVVLLQKDNVG   88 (102)
T ss_dssp             CBHHHHHHHHHHHTCCCGGGBCEEE---TTEE---ECCSSSBHHHHTCCTTEEEEECBCCCCC
T ss_pred             CCHHHHHHHHHHHHCcChHHeEEEE---CCEE---CCCCcccHHHCCCCCCCEEEEEECCCCC
Confidence            5899999999999999999999997   4654   5566689999999999999999976433

>2faz_A Ubiquitin-like containing PHD and ring finger DOM protein 1; cell cycle, DNA damage, DNA repair, DNA-binding, ligase, Met binding, nuclear protein; 2.00A {Homo sapiens} SCOP: d.15.1.1

Probab=98.86  E-value=2e-09  Score=75.31  Aligned_cols=51  Identities=12%  Similarity=0.109  Sum_probs=45.4

Q ss_pred             CCHHHHHHhcccccccCCCCeEEEEEcCCCCeeeecCCCCCcCCCCCCCCCcEEEEec
Q 028484            1 MSVESVKDKLWRKCGTSVNSMSLELYDDTNTKVAALTDNSRPLGFYSPLQGYRLHVID   58 (208)
Q Consensus         1 ~TI~~LK~KLe~itGi~p~~m~L~l~~~~g~~~~~l~dd~~~L~~y~i~~g~~IhV~D   58 (208)
                      .||.+||++|+..+|+||+.|+|.+   .|+.   | +|+++|++|++++|++||++=
T Consensus        25 ~tv~~lK~~i~~~~gip~~~qrL~~---~g~~---L-~d~~tL~~~~i~~g~~i~l~~   75 (78)
T 2faz_A           25 TKVEELRRKIQELFHVEPGLQRLFY---RGKQ---M-EDGHTLFDYEVRLNDTIQLLV   75 (78)
T ss_dssp             CBHHHHHHHHHHHHCCCGGGEEEEE---TTEE---C-CTTCBTTTTTCCTTCEEEEEE
T ss_pred             CCHHHHHHHHHHHHCcChhhEEEEE---CCEE---C-CCCCCHHHcCCCCCCEEEEEE
Confidence            4899999999999999999999997   4654   3 578999999999999999973

>2kd0_A LRR repeats and ubiquitin-like domain-containing protein AT2G30105; ubiquitin-like protein, NESG, leucine-rich repeat, structural genomics; NMR {Arabidopsis thaliana}

Probab=98.82  E-value=3.7e-09  Score=76.11  Aligned_cols=52  Identities=15%  Similarity=0.111  Sum_probs=46.3

Q ss_pred             CCHHHHHHhcccccccCCCCeEEEEEcCCCCeeeecCCCCCcCCCCCCCCCcEEEEecC
Q 028484            1 MSVESVKDKLWRKCGTSVNSMSLELYDDTNTKVAALTDNSRPLGFYSPLQGYRLHVIDL   59 (208)
Q Consensus         1 ~TI~~LK~KLe~itGi~p~~m~L~l~~~~g~~~~~l~dd~~~L~~y~i~~g~~IhV~D~   59 (208)
                      .||.+||++|+..+|+||+.|+|.+   .|+.   | +|+++|++|++++|++|+|+.+
T Consensus        32 ~TV~~LK~~I~~~~gip~~~qrL~~---~Gk~---L-~D~~tL~~~gi~~g~~l~l~~s   83 (85)
T 2kd0_A           32 CTVKDLKSQLQPITNVLPRGQKLIF---KGKV---L-VETSTLKQSDVGSGAKLMLMAS   83 (85)
T ss_dssp             SBHHHHHHHHHHHHCCCTTTCEEEE---TTEE---C-CTTCBTTTTTCCTTEEEEEECC
T ss_pred             CcHHHHHHHHHHHHCcChHHEEEEE---CCeE---C-CCcCCHHHCCCCCCCEEEEEEe
Confidence            4899999999999999999999986   4654   3 6789999999999999999864

>3plu_A Ubiquitin-like modifier HUB1; ubiquitin-like, HUB-1, SNU66, peptide binding protein; 1.40A {Saccharomyces cerevisiae} PDB: 3plv_A 1m94_A 1p0r_A

Probab=98.82  E-value=2e-09  Score=79.58  Aligned_cols=50  Identities=24%  Similarity=0.203  Sum_probs=45.0

Q ss_pred             CCHHHHHHhcccccccCCCCeEEEEEcCCCCeeeecCCCCCcCCCCCCCCCcEEEEe
Q 028484            1 MSVESVKDKLWRKCGTSVNSMSLELYDDTNTKVAALTDNSRPLGFYSPLQGYRLHVI   57 (208)
Q Consensus         1 ~TI~~LK~KLe~itGi~p~~m~L~l~~~~g~~~~~l~dd~~~L~~y~i~~g~~IhV~   57 (208)
                      .||.+||++|+..+||||++|+|.+   .|+.   | .|..+|++|+|++|++||+-
T Consensus        42 DTI~~LK~~I~~k~Gip~~qQrLif---~Gk~---L-kD~~TL~dY~I~dgstLhL~   91 (93)
T 3plu_A           42 DSVGDFKKVLSLQIGTQPNKIVLQK---GGSV---L-KDHISLEDYEVHDQTNLELY   91 (93)
T ss_dssp             SBHHHHHHHHHHHHTCCGGGEEEEE---TTEE---C-CTTSBTGGGTCCTTCEEEEE
T ss_pred             CHHHHHHHHHHHHhCCCHHHEEEEe---CCEE---c-cCcCCHHHcCCCCCCEEEEE
Confidence            4899999999999999999999988   5765   3 68899999999999999974

>2kk8_A Uncharacterized protein AT4G05270; solution arabidopsis thaliana, uncharacterized putative protein, NESG, structural genomics; NMR {Arabidopsis thaliana}

Probab=98.82  E-value=9.7e-10  Score=79.17  Aligned_cols=51  Identities=12%  Similarity=0.068  Sum_probs=45.3

Q ss_pred             CCHHHHHHhcccccccCCCCeEEEEEcCCCCeeeecCCCCCcCCCCCCCCCcEEEEe
Q 028484            1 MSVESVKDKLWRKCGTSVNSMSLELYDDTNTKVAALTDNSRPLGFYSPLQGYRLHVI   57 (208)
Q Consensus         1 ~TI~~LK~KLe~itGi~p~~m~L~l~~~~g~~~~~l~dd~~~L~~y~i~~g~~IhV~   57 (208)
                      .||++||++|+..+|+||+.|+|.+   .|+.   +.+|+++|++|++++|++|||+
T Consensus        31 ~TV~~LK~~I~~~~gip~~~QrLi~---~Gk~---lL~D~~tL~~y~I~~gs~i~lv   81 (84)
T 2kk8_A           31 DTLLVVKQKIERSQHIPVSKQTLIV---DGIV---ILREDLTVEQCQIVPTSDIQLE   81 (84)
T ss_dssp             SBHHHHHHHHHHHHTCCGGGEEEEE---TTEE---CCCSSSBHHHHTCCTTSCEEEE
T ss_pred             ChHHHHHHHHHHHHCcChHHEEEEE---CCEE---ecCCcCCHHHcCCCCCCEEEEE
Confidence            4899999999999999999999998   4654   1368899999999999999986

>4ajy_B Transcription elongation factor B polypeptide 2; E3 ubiquitin ligase, transcription factor, hypoxic signaling transcription; 1.73A {Homo sapiens} PDB: 1lqb_A 1vcb_A 2c9w_B 2izv_B 2jz3_B 2xai_C 3dcg_A 3zrc_A* 3zrf_A 3ztc_A* 3ztd_A* 3zun_A* 1lm8_B 4b95_A* 2fnj_B 4b9k_A* 4awj_A*

Probab=98.82  E-value=3.7e-09  Score=81.34  Aligned_cols=68  Identities=12%  Similarity=0.031  Sum_probs=53.6

Q ss_pred             CCHHHHHHhcccccccCCCCeEEEEEcCCCCeeeecCCCCCcCCCCCCCC-------CcEEEEecCCCCCccCCCcccCC
Q 028484            1 MSVESVKDKLWRKCGTSVNSMSLELYDDTNTKVAALTDNSRPLGFYSPLQ-------GYRLHVIDLDPSSVTSGGWLEDT   73 (208)
Q Consensus         1 ~TI~~LK~KLe~itGi~p~~m~L~l~~~~g~~~~~l~dd~~~L~~y~i~~-------g~~IhV~D~~p~s~~~~~~l~D~   73 (208)
                      .||.+||+||+.++||||++|+|++   +|+.    .+|.++|++|+|++       +++||++=..      .|.|+++
T Consensus        22 dTV~~lK~kI~~~~giPp~qQrLI~---~Gk~----LeD~kTL~dy~I~~~ta~~q~~atl~Lvlr~------~~~fE~l   88 (118)
T 4ajy_B           22 STVFELKRIVEGILKRPPDEQRLYK---DDQL----LDDGKTLGECGFTSQTARPQAPATVGLAFRA------DDTFEAL   88 (118)
T ss_dssp             SBHHHHHHHHHHHHCCCGGGEEEEE---TTEE----CCTTSBTTTTTCCGGGSBTTBCEEEEEEECC------SSCCCCC
T ss_pred             ChHHHHHHHHHHHHCCCHHHeEEEe---CCeE----CCCcCCHHHcCCCcCcccCCCCCEEEEEEec------CCCccce
Confidence            4899999999999999999999996   5654    38899999999999       9999998432      3446665


Q ss_pred             CcceeeecC
Q 028484           74 SLVEKYTIS   82 (208)
Q Consensus        74 s~vek~~ls   82 (208)
                      .- +.|..+
T Consensus        89 ~i-~p~s~p   96 (118)
T 4ajy_B           89 CI-EPFSSP   96 (118)
T ss_dssp             CB-CCCCCC
T ss_pred             EE-ecCCCC
Confidence            42 244443

>2klc_A Ubiquilin-1; ubiquitin-like, structural genomics, PSI-2, protein structur initiative, northeast structural genomics consortium, NESG; NMR {Homo sapiens}

Probab=98.79  E-value=4.8e-09  Score=77.91  Aligned_cols=54  Identities=15%  Similarity=0.250  Sum_probs=47.9

Q ss_pred             CCHHHHHHhcccccccCCCCeEEEEEcCCCCeeeecCCCCCcCCCCCCCCCcEEEEecCCC
Q 028484            1 MSVESVKDKLWRKCGTSVNSMSLELYDDTNTKVAALTDNSRPLGFYSPLQGYRLHVIDLDP   61 (208)
Q Consensus         1 ~TI~~LK~KLe~itGi~p~~m~L~l~~~~g~~~~~l~dd~~~L~~y~i~~g~~IhV~D~~p   61 (208)
                      .||.+||++|+..+|+||+.|+|.+   .|+.   | +|+++|++|++++|++|||+...|
T Consensus        45 ~TV~~LK~~I~~~~gip~~~qrLi~---~Gk~---L-~D~~tL~~~gI~~g~~I~l~~~~~   98 (101)
T 2klc_A           45 SSVQQFKEEISKRFKSHTDQLVLIF---AGKI---L-KDQDTLSQHGIHDGLTVHLVIKTQ   98 (101)
T ss_dssp             CCHHHHHHHHHHHHTCCGGGEEEEE---TTEE---E-CTTCCTGGGTCCTTCEEEEEECCS
T ss_pred             CCHHHHHHHHHHHHCcChhhEEEEE---CCEE---C-CCcCcHHHcCCCCCCEEEEEEcCC
Confidence            5899999999999999999999987   4655   3 577999999999999999998754

>4fbj_B NEDD8; effector-HOST target complex, glutamine deamidase, deamidati bacterial effector, cell cycle-protein binding complex; 1.60A {Homo sapiens} PDB: 4f8c_B

Probab=98.79  E-value=4.6e-09  Score=75.86  Aligned_cols=51  Identities=22%  Similarity=0.326  Sum_probs=45.9

Q ss_pred             CCHHHHHHhcccccccCCCCeEEEEEcCCCCeeeecCCCCCcCCCCCCCCCcEEEEec
Q 028484            1 MSVESVKDKLWRKCGTSVNSMSLELYDDTNTKVAALTDNSRPLGFYSPLQGYRLHVID   58 (208)
Q Consensus         1 ~TI~~LK~KLe~itGi~p~~m~L~l~~~~g~~~~~l~dd~~~L~~y~i~~g~~IhV~D   58 (208)
                      .||.+||++|+..+|+||+.|+|.+   .|+.   | +|+.+|++|++++|++||++=
T Consensus        21 ~TV~~LK~~I~~~~gip~~~qrLi~---~Gk~---L-~D~~tL~~~~i~~g~~l~l~~   71 (88)
T 4fbj_B           21 DKVERIKERVEEKEGIPPQQQRLIY---SGKQ---M-NDEKTAADYKILGGSVLHLVL   71 (88)
T ss_dssp             CBHHHHHHHHHHHHCCCGGGCEEEE---TTEE---C-CTTSBTTTTTCCTTCEEEEEC
T ss_pred             CCHHHHHHHHHHHHCcChhHEEEEE---CCeE---C-CCCCcHHHcCCCCCCEEEEEE
Confidence            4899999999999999999999998   4665   3 678999999999999999984

>2kan_A Uncharacterized protein AR3433A; ubiquitin fold, alpha+beta, structural genomics, protein structure initiative; NMR {Arabidopsis thaliana}

Probab=98.78  E-value=2.4e-09  Score=78.60  Aligned_cols=53  Identities=25%  Similarity=0.241  Sum_probs=46.6

Q ss_pred             CCHHHHHHhcccccccCCCCeEEEEEcCCCCeeeecCCCC-CcCCCCCCCCCcEEEEecCC
Q 028484            1 MSVESVKDKLWRKCGTSVNSMSLELYDDTNTKVAALTDNS-RPLGFYSPLQGYRLHVIDLD   60 (208)
Q Consensus         1 ~TI~~LK~KLe~itGi~p~~m~L~l~~~~g~~~~~l~dd~-~~L~~y~i~~g~~IhV~D~~   60 (208)
                      +||.+||++|+..+|+||+.|+|.+   .|+.   | +|+ ++|++|++++|++|||+..-
T Consensus        35 ~TV~~LK~~I~~~~gip~~~QrLi~---~Gk~---L-~D~~~tL~~ygI~~gstl~lv~r~   88 (94)
T 2kan_A           35 ETVSSLKDKIHIVENTPIKRMQLYY---SGIE---L-ADDYRNLNEYGITEFSEIVVFLKS   88 (94)
T ss_dssp             CBHHHHHHHHHHHSSSCTTTEEEEE---TTEE---E-CCTTSBHHHHTCCTTEEEEEEECC
T ss_pred             CcHHHHHHHHHHHHCcCHHHEEEEE---CCEE---C-CCCcccHHHCCCCCCCEEEEEEeC
Confidence            5899999999999999999999987   4665   4 455 99999999999999999754

>3v6c_B Ubiquitin; structural genomics, structural genomics consortium, SGC, UB protease, hydrolase-signaling protein complex; 1.70A {Homo sapiens} PDB: 3v6e_B

Probab=98.78  E-value=3.6e-09  Score=76.59  Aligned_cols=50  Identities=26%  Similarity=0.396  Sum_probs=45.2

Q ss_pred             CCHHHHHHhcccccccCCCCeEEEEEcCCCCeeeecCCCCCcCCCCCCCCCcEEEEe
Q 028484            1 MSVESVKDKLWRKCGTSVNSMSLELYDDTNTKVAALTDNSRPLGFYSPLQGYRLHVI   57 (208)
Q Consensus         1 ~TI~~LK~KLe~itGi~p~~m~L~l~~~~g~~~~~l~dd~~~L~~y~i~~g~~IhV~   57 (208)
                      .||.+||++|+..+|+||+.|+|.+   .|+.   | +|+.+|++|++++|++|||+
T Consensus        38 ~TV~~LK~~I~~~~gip~~~qrL~~---~Gk~---L-~D~~tL~~~gi~~g~~i~l~   87 (91)
T 3v6c_B           38 DTIENVKAKIQDKEGIPPDQQRLIF---AGKQ---L-EDGRTLSDYNIQKESTLHLV   87 (91)
T ss_dssp             CBHHHHHHHHHHHHCCCGGGCEEEE---TTEE---C-CTTCBTGGGTCCTTCEEEEE
T ss_pred             CCHHHHHHHHHhhhCCChhhEEEEE---CCeE---C-CCcCcHHHCCCCCCCEEEEE
Confidence            4899999999999999999999998   4655   3 57799999999999999997

>1ndd_A NEDD8, protein (ubiquitin-like protein NEDD8); proteolysis, signaling protei; 1.60A {Homo sapiens} SCOP: d.15.1.1 PDB: 1r4m_I 1r4n_I* 1xt9_B 2ko3_A 3gzn_I* 2bkr_B 2nvu_I* 3dqv_A 1bt0_A

Probab=98.78  E-value=4.1e-09  Score=72.63  Aligned_cols=50  Identities=22%  Similarity=0.359  Sum_probs=45.0

Q ss_pred             CCHHHHHHhcccccccCCCCeEEEEEcCCCCeeeecCCCCCcCCCCCCCCCcEEEEe
Q 028484            1 MSVESVKDKLWRKCGTSVNSMSLELYDDTNTKVAALTDNSRPLGFYSPLQGYRLHVI   57 (208)
Q Consensus         1 ~TI~~LK~KLe~itGi~p~~m~L~l~~~~g~~~~~l~dd~~~L~~y~i~~g~~IhV~   57 (208)
                      .||.+||++|+..+|+||+.|+|.+   .|+.   | +|+.+|++|++++|++|||+
T Consensus        21 ~tv~~lK~~i~~~~~i~~~~q~L~~---~g~~---L-~d~~tL~~~~i~~g~~i~l~   70 (76)
T 1ndd_A           21 DKVERIKERVEEKEGIPPQQQRLIY---SGKQ---M-NDEKTAADYKILGGSVLHLV   70 (76)
T ss_dssp             CBHHHHHHHHHHHHCCCGGGEEEEE---TTEE---C-CTTSBGGGGTCCTTCEEEEE
T ss_pred             ChHHHHHHHHHHHHCcChHHEEEEE---CCEE---C-CCCCcHHHcCCCCCCEEEEE
Confidence            4899999999999999999999997   4654   3 57899999999999999997

>1ttn_A DC-UBP, dendritic cell-derived ubiquitin-like protein; ubiquitin-like domain, solution structure, signaling protein; NMR {Homo sapiens} SCOP: d.15.1.1

Probab=98.76  E-value=3.4e-09  Score=79.23  Aligned_cols=55  Identities=18%  Similarity=0.159  Sum_probs=48.9

Q ss_pred             CCHHHHHHhcccccccCCCCeEEEEEcCCCCeeeecCCCCCcCCCCCCCCCcEEEEecCCCC
Q 028484            1 MSVESVKDKLWRKCGTSVNSMSLELYDDTNTKVAALTDNSRPLGFYSPLQGYRLHVIDLDPS   62 (208)
Q Consensus         1 ~TI~~LK~KLe~itGi~p~~m~L~l~~~~g~~~~~l~dd~~~L~~y~i~~g~~IhV~D~~p~   62 (208)
                      .||.+||.+|+..+|+|++.|+|.+   .|+.   | +|+++|++|++++|++|||+...|.
T Consensus        44 ~TV~~LK~~I~~~~gip~~~qrLi~---~Gk~---L-~D~~tL~~ygI~~g~ti~lv~~~~~   98 (106)
T 1ttn_A           44 DTVFHMKRRLHAAEGVEPGSQRWFF---SGRP---L-TDKMKFEELKIPKDYVVQVIVSQPV   98 (106)
T ss_dssp             SHHHHHHHHHHHTTCCCSTTCEEEE---TTEE---C-CTTSHHHHCCCSSSCEEEEECCCSS
T ss_pred             CcHHHHHHHHHHHHCcCcccEEEEE---CCEE---C-CCCCcHHHcCCCCCCEEEEEEeCCC
Confidence            4899999999999999999999998   4654   3 6789999999999999999998764

>3n3k_B Ubiquitin; hydrolase, protease, thiol protease, DUB, zinc ribbon, inhibitor, ubiqu acetylation, cytoplasm, isopeptide bond, nucleus; 2.60A {Homo sapiens} SCOP: d.15.1.1

Probab=98.76  E-value=6e-09  Score=73.67  Aligned_cols=51  Identities=24%  Similarity=0.294  Sum_probs=45.4

Q ss_pred             CCHHHHHHhcccccccCCCCeEEEEEcCCCCeeeecCCCCCcCCCCCCCCCcEEEEec
Q 028484            1 MSVESVKDKLWRKCGTSVNSMSLELYDDTNTKVAALTDNSRPLGFYSPLQGYRLHVID   58 (208)
Q Consensus         1 ~TI~~LK~KLe~itGi~p~~m~L~l~~~~g~~~~~l~dd~~~L~~y~i~~g~~IhV~D   58 (208)
                      .||.+||++|+..+|+||+.|+|.+   .|+.   | +|+.+|++|+++++++|||+=
T Consensus        24 ~tV~~lK~~i~~~~~ip~~~qrL~~---~g~~---L-~d~~tL~~~~i~~~~~i~l~~   74 (85)
T 3n3k_B           24 DTIENVKAKIQDKEGIPPDQQRLIF---AGKQ---L-EDGRTLSDYNIHNHSALYLLL   74 (85)
T ss_dssp             CBHHHHHHHHHHHHCCCGGGEEEEE---TBEE---C-CTTCBTTTTTCCTTCEEEEEE
T ss_pred             CcHHHHHHHHHHHHCCCHHHEEEEE---CCeE---C-CCCCCHHHCCCCCCCEEEEEE
Confidence            4899999999999999999999998   4654   3 577899999999999999984

>1v86_A DNA segment, CHR 7, wayne state university 128, expressed; ubiquitin fold, structural genomics, D7WSU128E protein; HET: DNA; NMR {Mus musculus} SCOP: d.15.1.1

Probab=98.76  E-value=1.2e-09  Score=80.35  Aligned_cols=52  Identities=12%  Similarity=0.102  Sum_probs=45.8

Q ss_pred             CCHHHHHHhcccccccCCCCeEEEEEcCCCCeeeecCCCCCcCCCCCCCCCcEEEEecCC
Q 028484            1 MSVESVKDKLWRKCGTSVNSMSLELYDDTNTKVAALTDNSRPLGFYSPLQGYRLHVIDLD   60 (208)
Q Consensus         1 ~TI~~LK~KLe~itGi~p~~m~L~l~~~~g~~~~~l~dd~~~L~~y~i~~g~~IhV~D~~   60 (208)
                      .||.+||++|+..|||||+.|+|.+   .|+.   | +|. +|++|++++|++|||+++.
T Consensus        37 ~TV~~LK~~I~~~tgip~~~QrL~~---~Gk~---L-dd~-tL~~~~i~~g~~i~lv~~~   88 (95)
T 1v86_A           37 STGSELKQKIHSITGLPPAMQKVMY---KGLV---P-EDK-TLREIKVTSGAKIMVVGST   88 (95)
T ss_dssp             SBHHHHHHHHHHHHCSCSTTCCCBS---SSBC---C-SSS-BHHHHCCCTTEEEEECCSS
T ss_pred             CcHHHHHHHHHHHHCcCHHHeEEEE---CCee---C-CcC-cHHHCCCCCCCEEEEEecc
Confidence            4899999999999999999999997   4654   4 444 9999999999999999975

>2dzi_A Ubiquitin-like protein 4A; GDX, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.75  E-value=4.3e-09  Score=73.76  Aligned_cols=50  Identities=20%  Similarity=0.231  Sum_probs=44.9

Q ss_pred             CCHHHHHHhcccccccCCCCeEEEEEcCCCCeeeecCCCCCcCCCCCCCCCcEEEEe
Q 028484            1 MSVESVKDKLWRKCGTSVNSMSLELYDDTNTKVAALTDNSRPLGFYSPLQGYRLHVI   57 (208)
Q Consensus         1 ~TI~~LK~KLe~itGi~p~~m~L~l~~~~g~~~~~l~dd~~~L~~y~i~~g~~IhV~   57 (208)
                      .||++||++|+..+|+||+.|+|.+   .|+.   | +|+.+|++|++++|++|||+
T Consensus        28 ~tV~~LK~~i~~~~~i~~~~qrL~~---~gk~---L-~d~~tL~~~~i~~g~~i~l~   77 (81)
T 2dzi_A           28 ELVSTLKQLVSEKLNVPVRQQRLLF---KGKA---L-ADGKRLSDYSIGPNSKLNLV   77 (81)
T ss_dssp             CBHHHHHHHHHHHTCCCTTTCEEEE---TTEE---C-CTTSBGGGGTCCSSBCCEEE
T ss_pred             CcHHHHHHHHHHHHCcCHHHEEEEE---CCeE---C-CCCCcHHHcCCCCCCEEEEE
Confidence            4899999999999999999999987   4665   3 57789999999999999987

>3m62_B UV excision repair protein RAD23; armadillo-like repeats, UBL conjugation pathway, DNA damage, nucleus, phosphoprotein; HET: 1PE; 2.40A {Saccharomyces cerevisiae}

Probab=98.75  E-value=7.9e-09  Score=77.36  Aligned_cols=56  Identities=14%  Similarity=0.137  Sum_probs=48.0

Q ss_pred             CCHHHHHHhcccccccCCCCeEEEEEcCCCCeeeecCCCCCcCCCCCCCCCcEEEEecCCCCC
Q 028484            1 MSVESVKDKLWRKCGTSVNSMSLELYDDTNTKVAALTDNSRPLGFYSPLQGYRLHVIDLDPSS   63 (208)
Q Consensus         1 ~TI~~LK~KLe~itGi~p~~m~L~l~~~~g~~~~~l~dd~~~L~~y~i~~g~~IhV~D~~p~s   63 (208)
                      .||.+||++|+..+|+||+.|+|.+   .|+.   | +|+.+|++|++++|++||++-..|.+
T Consensus        22 ~TV~~LK~~I~~~~gip~~~QrLi~---~Gk~---L-~D~~tL~~~~i~~g~~i~lv~~~~~~   77 (106)
T 3m62_B           22 NTILETKTKLAQSISCEESQIKLIY---SGKV---L-QDSKTVSECGLKDGDQVVFMVSQKKS   77 (106)
T ss_dssp             SBHHHHHHHHHHTTTSCGGGCEEEE---TTEE---C-CTTSBTTTTTCCTTCEEEEECCC---
T ss_pred             CcHHHHHHHHHHHHCCChhhEEEEE---CCEE---C-CCcCCHHHcCCCCCCEEEEEEcCCCC
Confidence            4899999999999999999999998   4765   3 67899999999999999999877643

>1we6_A Splicing factor, putative; structural genomics, ubiquitin-like domain, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: d.15.1.1

Probab=98.74  E-value=7.2e-09  Score=77.99  Aligned_cols=50  Identities=22%  Similarity=0.190  Sum_probs=45.1

Q ss_pred             CCHHHHHHhcccccccCCCCeEEEEEcCCCCeeeecCCCCCcCCCCCCCCCcEEEEe
Q 028484            1 MSVESVKDKLWRKCGTSVNSMSLELYDDTNTKVAALTDNSRPLGFYSPLQGYRLHVI   57 (208)
Q Consensus         1 ~TI~~LK~KLe~itGi~p~~m~L~l~~~~g~~~~~l~dd~~~L~~y~i~~g~~IhV~   57 (208)
                      .||.+||++|+..+||||+.|+|.+   .|+.   | +|+++|++|++++|++|||+
T Consensus        52 ~TV~~LK~~I~~~~gip~~~QrL~~---~Gk~---L-~D~~tL~~y~I~~g~~l~l~  101 (111)
T 1we6_A           52 ENVGSLKEKIAGEIQIPANKQKLSG---KAGF---L-KDNMSLAHYNVGAGEILTLS  101 (111)
T ss_dssp             SBHHHHHHHHHHHTTCCTTTSEEEC---SSSB---C-CTTSBTTTTTCSSSCEEEEE
T ss_pred             CcHHHHHHHHHHHHCCCHHHeEEEE---CCEE---C-CCCCcHHHCCCCCCCEEEEE
Confidence            4899999999999999999999998   4654   3 67899999999999999998

>4eew_A Large proline-rich protein BAG6; ubiquitin-like fold, GP78-binding, chaperone; 1.30A {Homo sapiens}

Probab=98.74  E-value=5.2e-09  Score=74.98  Aligned_cols=49  Identities=18%  Similarity=0.308  Sum_probs=44.0

Q ss_pred             CCHHHHHHhcccccccCCCCeEEEEEcCCCCeeeecCCCCCcCCCCCCCCCcEEEEe
Q 028484            1 MSVESVKDKLWRKCGTSVNSMSLELYDDTNTKVAALTDNSRPLGFYSPLQGYRLHVI   57 (208)
Q Consensus         1 ~TI~~LK~KLe~itGi~p~~m~L~l~~~~g~~~~~l~dd~~~L~~y~i~~g~~IhV~   57 (208)
                      .||.+||++|+..+|+||+.|+|.+   .|+.   | +|+.+|++|++ +|++||++
T Consensus        38 ~tV~~lK~~i~~~~gip~~~qrLi~---~Gk~---L-~D~~tL~~~~i-~g~~i~lv   86 (88)
T 4eew_A           38 MNVKEFKEHIAASVSIPSEKQRLIY---QGRV---L-QDDKKLQEYNV-GGKVIHLV   86 (88)
T ss_dssp             CBHHHHHHHHHHHHTCCGGGEEEEE---TTEE---C-CTTSBGGGGTC-TTEEEEEE
T ss_pred             CCHHHHHHHHHHHhCCCHHHEEEEE---CCEE---C-CCCCcHHHcCC-CCcEEEEE
Confidence            4899999999999999999999998   5665   3 57899999999 89999986

>3dbh_I NEDD8; cell cycle, activating enzyme, apoptosis, membrane, UBL conjugation pathway, ATP-binding, ligase, nucleotide- binding, polymorphism; 2.85A {Homo sapiens} SCOP: d.15.1.1 PDB: 3dbr_I 3dbl_I

Probab=98.74  E-value=4.4e-09  Score=74.94  Aligned_cols=50  Identities=22%  Similarity=0.359  Sum_probs=45.3

Q ss_pred             CCHHHHHHhcccccccCCCCeEEEEEcCCCCeeeecCCCCCcCCCCCCCCCcEEEEe
Q 028484            1 MSVESVKDKLWRKCGTSVNSMSLELYDDTNTKVAALTDNSRPLGFYSPLQGYRLHVI   57 (208)
Q Consensus         1 ~TI~~LK~KLe~itGi~p~~m~L~l~~~~g~~~~~l~dd~~~L~~y~i~~g~~IhV~   57 (208)
                      .||.+||++|+..+|+||+.|+|.+   .|+.   | +|+.+|++|++++|++|||+
T Consensus        33 ~tV~~lK~~i~~~~gip~~~qrL~~---~G~~---L-~d~~tL~~~~i~~~~~i~l~   82 (88)
T 3dbh_I           33 DKVERIKERVEEKEGIPPQQQRLIY---SGKQ---M-NDEKTAADYKILGGSVLHLV   82 (88)
T ss_dssp             CBHHHHHHHHHHHHCCCGGGCCEEE---TTEE---C-CTTSBGGGGTCCTTCEEEEC
T ss_pred             CCHHHHHHHHHHHHCcCHHHEEEEE---CCeE---C-CCCCcHHHcCCCCCCEEEEE
Confidence            4899999999999999999999998   4655   3 57899999999999999997

>4dwf_A HLA-B-associated transcript 3; ubiquitin-like domain, BAT3 protein, PF00240, structural GEN joint center for structural genomics, JCSG; 1.80A {Homo sapiens} PDB: 1wx9_A

Probab=98.74  E-value=6.8e-09  Score=74.68  Aligned_cols=56  Identities=18%  Similarity=0.319  Sum_probs=48.2

Q ss_pred             CCHHHHHHhcccccccCCCCeEEEEEcCCCCeeeecCCCCCcCCCCCCCCCcEEEEecCCCCCc
Q 028484            1 MSVESVKDKLWRKCGTSVNSMSLELYDDTNTKVAALTDNSRPLGFYSPLQGYRLHVIDLDPSSV   64 (208)
Q Consensus         1 ~TI~~LK~KLe~itGi~p~~m~L~l~~~~g~~~~~l~dd~~~L~~y~i~~g~~IhV~D~~p~s~   64 (208)
                      .||.+||++|+..+|+||+.|+|.+   .|+.   | +|+.+|++|++ +|++||++-..|.+.
T Consensus        26 ~tV~~lK~~i~~~~gip~~~qrLi~---~Gk~---L-~d~~tL~~~~i-~g~~i~l~~~~~~~~   81 (90)
T 4dwf_A           26 MNVKEFKEHIAASVSIPSEKQRLIY---QGRV---L-QDDKKLQEYNV-GGKVIHLVERAPPQT   81 (90)
T ss_dssp             CBHHHHHHHHHHHHTCCGGGEEEEE---TTEE---C-CTTSBGGGGTC-TTEEEEEEECCCC--
T ss_pred             CCHHHHHHHHHHHhCCCHHHEEEEE---CCeE---C-CCCCCHHHcCC-CCcEEEEEecCCCCC
Confidence            5899999999999999999999998   5765   3 67899999999 899999999876543

>3a9j_A Ubiquitin; protein complex, cytoplasm, isopeptide bond, metal-binding, zinc; 1.18A {Mus musculus} PDB: 3a1q_B 2znv_B 3a9k_A 3h7p_A 3jsv_A 3dvg_Y 3dvn_Y 3nob_A 2o6v_D* 3jw0_X 3jvz_X 3nhe_B* 1aar_A 1d3z_A 1f9j_A 1fxt_B 1g6j_A 1nbf_C 1cmx_B 1q5w_B ...

Probab=98.74  E-value=6.8e-09  Score=71.52  Aligned_cols=50  Identities=26%  Similarity=0.396  Sum_probs=44.9

Q ss_pred             CCHHHHHHhcccccccCCCCeEEEEEcCCCCeeeecCCCCCcCCCCCCCCCcEEEEe
Q 028484            1 MSVESVKDKLWRKCGTSVNSMSLELYDDTNTKVAALTDNSRPLGFYSPLQGYRLHVI   57 (208)
Q Consensus         1 ~TI~~LK~KLe~itGi~p~~m~L~l~~~~g~~~~~l~dd~~~L~~y~i~~g~~IhV~   57 (208)
                      .||++||++|+..+|+||+.|+|.+   .|+.   | +|+.+|++|++.+|++|||+
T Consensus        21 ~tv~~lK~~i~~~~~i~~~~q~L~~---~g~~---L-~d~~tL~~~~i~~g~~i~l~   70 (76)
T 3a9j_A           21 DTIENVKAKIQDKEGIPPDQQRLIF---AGKQ---L-EDGRTLSDYNIQRESTLHLV   70 (76)
T ss_dssp             CBHHHHHHHHHHHHCCCGGGEEEEE---TTEE---C-CTTCBTGGGTCCTTCEEEEE
T ss_pred             CcHHHHHHHHHHHHCcCHHHeEEEE---CCeE---C-CCCCcHHHcCCCCCCEEEEE
Confidence            4899999999999999999999998   4654   4 56899999999999999997

>1wju_A NEDD8 ultimate buster-1; ubiquitin-like domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Homo sapiens} SCOP: d.15.1.1

Probab=98.73  E-value=7e-09  Score=77.65  Aligned_cols=56  Identities=16%  Similarity=0.249  Sum_probs=49.3

Q ss_pred             CCHHHHHHhcccccccCCCCeEEEEEcCCCCeeeecCCCCCcCCCCCCCCCcEEEEecCCCCC
Q 028484            1 MSVESVKDKLWRKCGTSVNSMSLELYDDTNTKVAALTDNSRPLGFYSPLQGYRLHVIDLDPSS   63 (208)
Q Consensus         1 ~TI~~LK~KLe~itGi~p~~m~L~l~~~~g~~~~~l~dd~~~L~~y~i~~g~~IhV~D~~p~s   63 (208)
                      .||.+||++|+..+|+||++|+|++   .|+.   | +|+++|.+|+|++|++|||+=+...+
T Consensus        40 ~TV~~lK~kI~~k~gip~~qQrLI~---~GKi---L-~D~~TL~~y~I~~gsti~vl~lrg~~   95 (100)
T 1wju_A           40 ITGRELRSKIAETFGLQENYIKIVI---NKKQ---L-QLGKTLEEQGVAHNVKAMVLELKQSS   95 (100)
T ss_dssp             SBHHHHHHHHHHHTTCCSTTCEEEE---TTEE---C-CTTSBHHHHTCCSSEEEEEECCCCCC
T ss_pred             CHHHHHHHHHHHHHCcCHHHeEEEe---CCeE---C-CCCCcHHHcCCCCCCEEEEEEECCCC
Confidence            4899999999999999999999997   5876   3 68899999999999999998776543

>1wh3_A 59 kDa 2'-5'-oligoadenylate synthetase like protein; P59 OASL, ubiquitin family, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.1

Probab=98.72  E-value=4.6e-09  Score=74.92  Aligned_cols=51  Identities=18%  Similarity=0.197  Sum_probs=45.5

Q ss_pred             CCHHHHHHhcccccccCCCCeEEEEEcCCCCeeeecCCCCCcCCCCCCCCCcEEEEec
Q 028484            1 MSVESVKDKLWRKCGTSVNSMSLELYDDTNTKVAALTDNSRPLGFYSPLQGYRLHVID   58 (208)
Q Consensus         1 ~TI~~LK~KLe~itGi~p~~m~L~l~~~~g~~~~~l~dd~~~L~~y~i~~g~~IhV~D   58 (208)
                      .||.+||++|+..+|+||+.|+|.+   .|+.   | +|+++|++|++++|++|||+=
T Consensus        28 ~tV~~lK~~i~~~~gi~~~~qrL~~---~Gk~---L-~d~~tL~~~~i~~g~~i~l~~   78 (87)
T 1wh3_A           28 SFILGLKQQIEDQQGLPKKQQQLEF---QGQV---L-QDWLGLGIYGIQDSDTLILSK   78 (87)
T ss_dssp             SBHHHHHHHHHHHTCCCTTTEEEEE---TTEE---C-CSSSBHHHHTCCTTEEEEEEE
T ss_pred             ChHHHHHHHHHHHhCCChHHEEEEE---CCEE---c-cCCCCHHHCCCCCCCEEEEEE
Confidence            4899999999999999999999997   4654   3 578999999999999999984

>1wy8_A NP95-like ring finger protein, isoform A; ubiquitin-like domain, NP95/ICBP90-like ring finger (NIRF), ubiquitin ligase, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.15.1.1

Probab=98.72  E-value=5.2e-09  Score=75.05  Aligned_cols=51  Identities=14%  Similarity=0.229  Sum_probs=45.6

Q ss_pred             CCHHHHHHhcccccccCCCCeEEEEEcCCCCeeeecCCCCCcCCCCCCCCCcEEEEec
Q 028484            1 MSVESVKDKLWRKCGTSVNSMSLELYDDTNTKVAALTDNSRPLGFYSPLQGYRLHVID   58 (208)
Q Consensus         1 ~TI~~LK~KLe~itGi~p~~m~L~l~~~~g~~~~~l~dd~~~L~~y~i~~g~~IhV~D   58 (208)
                      .||.+||++|+..+|+||+.|+|.+   .|+.   | +|+++|++|++.+|++||++=
T Consensus        30 ~tV~~lK~~i~~~~gip~~~qrL~~---~gk~---L-~d~~tL~~~~i~~g~~i~l~~   80 (89)
T 1wy8_A           30 ATIEELRERVWALFDVRPECQRLFY---RGKQ---L-ENGYTLFDYDVGLNDIIQLLV   80 (89)
T ss_dssp             CBHHHHHHHHHHHSCCCTTTEEEEE---TTEE---C-CSSSBHHHHTCCTTCEEEEEE
T ss_pred             CCHHHHHHHHHHHHCcChhhEEEEE---CCeE---C-CCCCCHHHCCCCCCCEEEEEE
Confidence            4899999999999999999999998   4654   3 578999999999999999984

>4hcn_B Polyubiquitin, ubiquitin; ubiquitin/NEDD8 deamidase, NEDD8, protein binding; 2.60A {Saccharomyces cerevisiae}

Probab=98.71  E-value=7.6e-09  Score=76.12  Aligned_cols=50  Identities=24%  Similarity=0.396  Sum_probs=45.4

Q ss_pred             CCHHHHHHhcccccccCCCCeEEEEEcCCCCeeeecCCCCCcCCCCCCCCCcEEEEe
Q 028484            1 MSVESVKDKLWRKCGTSVNSMSLELYDDTNTKVAALTDNSRPLGFYSPLQGYRLHVI   57 (208)
Q Consensus         1 ~TI~~LK~KLe~itGi~p~~m~L~l~~~~g~~~~~l~dd~~~L~~y~i~~g~~IhV~   57 (208)
                      .||.+||++|+..+|+||+.|+|.+   .|+.   | +|+.+|++|++++|++||++
T Consensus        43 ~TV~~LK~~I~~~~gip~~~qrLi~---~Gk~---L-~D~~tL~~~~i~~g~~i~l~   92 (98)
T 4hcn_B           43 DTIDNVKSKIQDKEGIPPDQQRLIF---AGKQ---L-EDGRTLSDYNIQKESTLHLV   92 (98)
T ss_dssp             CBHHHHHHHHHHHHCCCGGGCEEEE---TTEE---C-CTTCBSGGGTCCTTEEEEEE
T ss_pred             CcHHHHHHHHHHHhCCChhHEEEEE---CCEE---C-CCCCcHHHCCCCCCCEEEEE
Confidence            4899999999999999999999998   4655   3 67899999999999999997

>3mtn_B UBA80, ubcep1, ubiquitin variant UBV.21.4; ubiquitin-specific protease activity, hydrolase, ubiquitin B structural genomics consortium, SGC; 2.70A {Homo sapiens} SCOP: d.15.1.1

Probab=98.71  E-value=9e-09  Score=72.62  Aligned_cols=51  Identities=24%  Similarity=0.300  Sum_probs=45.5

Q ss_pred             CCHHHHHHhcccccccCCCCeEEEEEcCCCCeeeecCCCCCcCCCCCCCCCcEEEEec
Q 028484            1 MSVESVKDKLWRKCGTSVNSMSLELYDDTNTKVAALTDNSRPLGFYSPLQGYRLHVID   58 (208)
Q Consensus         1 ~TI~~LK~KLe~itGi~p~~m~L~l~~~~g~~~~~l~dd~~~L~~y~i~~g~~IhV~D   58 (208)
                      .||.+||++|+..+|+||+.|+|.+   .|+.   | +|+.+|++|+++++++|||+=
T Consensus        24 ~tV~~lK~~i~~~~~i~~~~qrL~~---~g~~---L-~d~~tL~~~~i~~~~~l~l~~   74 (85)
T 3mtn_B           24 DTIENVKAKIQDKEGIPPDQQRLIF---AGKQ---L-EDGRTLSDYNIQKWSTLFLLL   74 (85)
T ss_dssp             CBHHHHHHHHHHHHCCCGGGCEEEE---TTEE---C-CTTSBTGGGTCCTTCEEEEEC
T ss_pred             CCHHHHHHHHHHHHCcChHHEEEEE---CCEE---C-CCCCCHHHcCCCCCCEEEEEE
Confidence            4899999999999999999999997   4654   3 577999999999999999984

>2hj8_A Interferon-induced 17 kDa protein; HR2873B, human ISG15, structure, northeast structural genomics consortium, protein structure initiative, NESG; NMR {Homo sapiens}

Probab=98.70  E-value=3.2e-09  Score=76.60  Aligned_cols=53  Identities=17%  Similarity=0.128  Sum_probs=46.8

Q ss_pred             CCHHHHHHhcccccccCCCCeEEEEEcCCCCeeeecCCCCCcCCCCCCCCCcEEEEecCC
Q 028484            1 MSVESVKDKLWRKCGTSVNSMSLELYDDTNTKVAALTDNSRPLGFYSPLQGYRLHVIDLD   60 (208)
Q Consensus         1 ~TI~~LK~KLe~itGi~p~~m~L~l~~~~g~~~~~l~dd~~~L~~y~i~~g~~IhV~D~~   60 (208)
                      .||.+||++|+..+|+||+.|+|.+   .|+.   | +|+++|++|++++|++|||+...
T Consensus        25 ~TV~~LK~~I~~~~gip~~~qrL~~---~Gk~---L-~D~~tL~~~~I~~g~~i~l~~~~   77 (88)
T 2hj8_A           25 QTVAHLKQQVSGLEGVQDDLFWLTF---EGKP---L-EDQLPLGEYGLKPLSTVFMNLRL   77 (88)
T ss_dssp             SBHHHHHHHHHHHTCSCTTTEEEES---SSSC---C-CTTSBHHHHHCSTTCEEEEEEC-
T ss_pred             CcHHHHHHHHHHHhCCChhHEEEEE---CCEE---C-CCCCcHHHcCCCCCCEEEEEEEc
Confidence            4899999999999999999999997   4665   3 57899999999999999999764

>1sif_A Ubiquitin; hydrophobic mutants, folding, stability, structural protein; 2.18A {Homo sapiens} SCOP: d.15.1.1

Probab=98.70  E-value=9.7e-09  Score=74.12  Aligned_cols=51  Identities=24%  Similarity=0.352  Sum_probs=45.3

Q ss_pred             CCHHHHHHhcccccccCCCCeEEEEEcCCCCeeeecCCCCCcCCCCCCCCCcEEEEec
Q 028484            1 MSVESVKDKLWRKCGTSVNSMSLELYDDTNTKVAALTDNSRPLGFYSPLQGYRLHVID   58 (208)
Q Consensus         1 ~TI~~LK~KLe~itGi~p~~m~L~l~~~~g~~~~~l~dd~~~L~~y~i~~g~~IhV~D   58 (208)
                      .||++||++|+..+|+||+.|+|.+   .|+.   | +|+++|++|++++|++||++=
T Consensus        30 ~TV~~LK~~I~~~~gip~~~qrL~~---~Gk~---L-~D~~tL~~~gi~~g~~i~l~~   80 (88)
T 1sif_A           30 DTIENLKAKIQDKEGIPPDQQRLIF---AGKQ---L-EDGRTLSDYNIQKESTLHLVL   80 (88)
T ss_dssp             SBHHHHHHHHHHHHCCCGGGCEEEE---TTEE---C-CTTSBSGGGTCCTTCEEEEEC
T ss_pred             ChHHHHHHHHHHHHCcChhhEEEEE---CCEE---C-CCCCcHHHcCCCCCCEEEEEE
Confidence            4899999999999999999999998   4654   3 568999999999999999973

>3k9o_B Ubiquitin, UBB+1; E2-25K, complex structure, ATP-binding, isopeptide BO ligase, nucleotide-binding, UBL conjugation pathway; 1.80A {Homo sapiens} PDB: 2k25_A 2kx0_A

Probab=98.69  E-value=1.1e-08  Score=74.27  Aligned_cols=51  Identities=25%  Similarity=0.363  Sum_probs=45.8

Q ss_pred             CCHHHHHHhcccccccCCCCeEEEEEcCCCCeeeecCCCCCcCCCCCCCCCcEEEEec
Q 028484            1 MSVESVKDKLWRKCGTSVNSMSLELYDDTNTKVAALTDNSRPLGFYSPLQGYRLHVID   58 (208)
Q Consensus         1 ~TI~~LK~KLe~itGi~p~~m~L~l~~~~g~~~~~l~dd~~~L~~y~i~~g~~IhV~D   58 (208)
                      .||.+||++|+..+|+||+.|+|.+   .|+.   | +|+.+|++|++++|++|||+=
T Consensus        22 ~TV~~LK~~i~~~~gip~~~qrL~~---~G~~---L-~d~~tL~~~~i~~~~~i~l~~   72 (96)
T 3k9o_B           22 DTIENVKAKIQDKEGIPPDQQRLIF---AGKQ---L-EDGRTLSDYNIQKESTLHLVL   72 (96)
T ss_dssp             CBHHHHHHHHHHHHCCCGGGEEEEE---TTEE---C-CTTSBTGGGTCCTTCEEEEEE
T ss_pred             CCHHHHHHHHHhhhCCChhHEEEEE---CCEE---C-CCCCcHHHcCCCCCCEEEEEE
Confidence            5899999999999999999999998   4655   3 577899999999999999984

>1j8c_A Ubiquitin-like protein hplic-2; ubiquitin-like domain, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.1

Probab=98.68  E-value=1.9e-08  Score=77.73  Aligned_cols=54  Identities=15%  Similarity=0.207  Sum_probs=47.0

Q ss_pred             CCHHHHHHhcccccccCCCCeEEEEEcCCCCeeeecCCCCCcCCCCCCCCCcEEEEecCCC
Q 028484            1 MSVESVKDKLWRKCGTSVNSMSLELYDDTNTKVAALTDNSRPLGFYSPLQGYRLHVIDLDP   61 (208)
Q Consensus         1 ~TI~~LK~KLe~itGi~p~~m~L~l~~~~g~~~~~l~dd~~~L~~y~i~~g~~IhV~D~~p   61 (208)
                      .||.+||.+|+..+|||++.|+|.+   .|+.   | +|+++|++|++++|++|||+...+
T Consensus        52 ~TV~~LK~~I~~~~gip~~~QrLi~---~Gk~---L-~D~~tL~dygI~~gstI~lv~~~~  105 (125)
T 1j8c_A           52 SSVQQFKEAISKRFKSQTDQLVLIF---AGKI---L-KDQDTLIQHGIHDGLTVHLVIKRD  105 (125)
T ss_dssp             CCHHHHHHHHHHHHCSCSSSEEEEE---TTEE---E-STTSCGGGTTCSSSEEEEEEEC--
T ss_pred             CcHHHHHHHHHHHHCcCcceEEEEE---CCEE---c-CCCCCHHHcCCCCCCEEEEEeccC
Confidence            5899999999999999999999998   4665   3 577999999999999999998753

>2l7r_A Ubiquitin-like protein FUBI; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; NMR {Homo sapiens}

Probab=98.67  E-value=6.1e-09  Score=76.11  Aligned_cols=50  Identities=18%  Similarity=0.159  Sum_probs=45.2

Q ss_pred             CCHHHHHHhcccccccCCCCeEEEEEcCCCCeeeecCCCCCcCCCCCCCCCcEEEEe
Q 028484            1 MSVESVKDKLWRKCGTSVNSMSLELYDDTNTKVAALTDNSRPLGFYSPLQGYRLHVI   57 (208)
Q Consensus         1 ~TI~~LK~KLe~itGi~p~~m~L~l~~~~g~~~~~l~dd~~~L~~y~i~~g~~IhV~   57 (208)
                      .||.+||++|+..+|+||+.|+|.+   .|+.   | +|+++|++|++++|++|||+
T Consensus        38 ~TV~~LK~~I~~~~gip~~~qrLi~---~Gk~---L-~D~~tL~~y~I~~gstI~lv   87 (93)
T 2l7r_A           38 ETVAQIKAHVASLEGIAPEDQVVLL---AGAP---L-EDEATLGQCGVEALTTLEVA   87 (93)
T ss_dssp             CBHHHHHHHHHHHHTCCGGGCEEEE---TTEE---C-CTTSBHHHHTCCSSCEEEEE
T ss_pred             CcHHHHHHHHHHHhCcChhHEEEEE---CCEE---C-CCCCcHHHCCCCCCCEEEEE
Confidence            4899999999999999999999998   4654   4 67899999999999999997

>3b08_A Polyubiquitin-C, ubiquitin; protein complex, signaling protein-metal binding protein COM; HET: TRE; 1.70A {Homo sapiens} PDB: 2w9n_A* 3b0a_A* 3axc_A 2zvn_A 2zvo_A 2y5b_B

Probab=98.67  E-value=2.3e-08  Score=77.62  Aligned_cols=85  Identities=19%  Similarity=0.230  Sum_probs=63.3

Q ss_pred             CCHHHHHHhcccccccCCCCeEEEEEcCCCCeeeecCCCCCcCCCCCCCCCcEEEEecCCCCCccCCCcccCC-Ccceee
Q 028484            1 MSVESVKDKLWRKCGTSVNSMSLELYDDTNTKVAALTDNSRPLGFYSPLQGYRLHVIDLDPSSVTSGGWLEDT-SLVEKY   79 (208)
Q Consensus         1 ~TI~~LK~KLe~itGi~p~~m~L~l~~~~g~~~~~l~dd~~~L~~y~i~~g~~IhV~D~~p~s~~~~~~l~D~-s~vek~   79 (208)
                      .||.+||++|+..+|+||+.|+|.+   .|+.   | +|+.+|++|++++|++|||+...+..+.-.  +... .+.-.+
T Consensus        21 ~tv~~lK~~i~~~~gip~~~q~L~~---~g~~---L-~d~~tL~~~~i~~~~~l~l~~~~~~~~~i~--Vk~~~g~~~~~   91 (152)
T 3b08_A           21 DTIENVKAKIQDKEGIPPDQQRLIF---AGKQ---L-EDGRTLSDYNIQKESTLHLVLRLRGGMQIF--VKTLTGKTITL   91 (152)
T ss_dssp             CBHHHHHHHHHHHHCCCGGGEEEEE---TTEE---C-CTTSBTGGGTCCTTCEEEEEECCTTCEEEE--EEESSSCEEEE
T ss_pred             CCHHHHHHHHHHHHCcChHHeEEEE---CCeE---C-cCcccHHHhccCCCCeeEEEeeccccccee--eeecCCCEEEE
Confidence            5899999999999999999999998   3654   4 578999999999999999999876432100  1111 111134


Q ss_pred             ecCHHHHhcchhhHHHHHHHh
Q 028484           80 TISEEEYSKRDGTFRKFKEKV  100 (208)
Q Consensus        80 ~ls~e~Y~~r~dtv~~~k~~~  100 (208)
                      +++      ..+||...|++.
T Consensus        92 ~v~------~~~tv~~lK~~i  106 (152)
T 3b08_A           92 EVE------PSDTIENVKAKI  106 (152)
T ss_dssp             EEC------TTCBHHHHHHHH
T ss_pred             EeC------CCCcHHHHHHHH
Confidence            444      379999999875

>3b1l_X E3 ubiquitin-protein ligase parkin; proteasome, ALFA-beta-protein; 1.85A {Mus musculus} PDB: 1mg8_A 2zeq_A 2knb_A 1iyf_A

Probab=98.12  E-value=2.5e-09  Score=74.37  Aligned_cols=50  Identities=14%  Similarity=0.199  Sum_probs=44.6

Q ss_pred             CCHHHHHHhcccccccCCCCeEEEEEcCCCCeeeecCCCCCcCCCCCCCCCcEEEEe
Q 028484            1 MSVESVKDKLWRKCGTSVNSMSLELYDDTNTKVAALTDNSRPLGFYSPLQGYRLHVI   57 (208)
Q Consensus         1 ~TI~~LK~KLe~itGi~p~~m~L~l~~~~g~~~~~l~dd~~~L~~y~i~~g~~IhV~   57 (208)
                      .||++||++|+..+|+||+.|+|.+.   |+.   | +|+.+|++|++++|++||++
T Consensus        21 ~tV~~lK~~i~~~~gi~~~~qrL~~~---gk~---L-~d~~tL~~~~i~~g~~i~l~   70 (76)
T 3b1l_X           21 TSILQLKEVVAKQQGVPADQLRVIFA---GKE---L-PNHLTVQNCDLEQQSIVHIV   70 (76)
Confidence            48999999999999999999999873   654   3 56799999999999999986

>3vdz_A Ubiquitin-40S ribosomal protein S27A; gadolinium, MRI contrast agent, peptide-based contrast agent lanthanide binding TAG; 2.40A {Synthetic construct} PDB: 2ojr_A

Probab=98.66  E-value=1.8e-08  Score=76.03  Aligned_cols=50  Identities=26%  Similarity=0.396  Sum_probs=45.1

Q ss_pred             CCHHHHHHhcccccccCCCCeEEEEEcCCCCeeeecCCCCCcCCCCCCCCCcEEEEe
Q 028484            1 MSVESVKDKLWRKCGTSVNSMSLELYDDTNTKVAALTDNSRPLGFYSPLQGYRLHVI   57 (208)
Q Consensus         1 ~TI~~LK~KLe~itGi~p~~m~L~l~~~~g~~~~~l~dd~~~L~~y~i~~g~~IhV~   57 (208)
                      .||.+||.+|+..+|+||+.|+|.+   .|+.   | +|+++|++|++++|++||++
T Consensus        56 ~TV~~LK~~I~~~~gip~~~QrLi~---~Gk~---L-~D~~tL~~~gI~~gs~I~l~  105 (111)
T 3vdz_A           56 DTIENVKAKIQDKEGIPPDQQRLIF---AGKQ---L-EDGRTLSDYNIQKESTLHLV  105 (111)
T ss_dssp             CBHHHHHHHHHHHHCCCGGGEEEEE---TTEE---C-CTTSBTTTTTCCTTCEEEEE
T ss_pred             CCHHHHHHHHHHHhCCChHHEEEEE---CCEE---C-CCCCcHHHCCCCCCCEEEEE
Confidence            5899999999999999999999998   4654   3 57789999999999999997

>2kdi_A Ubiquitin, vacuolar protein sorting-associated protein 27 fusion protein; ubiquitin interacting motif, UIM, protein domain interface; NMR {Saccharomyces cerevisiae}

Probab=98.66  E-value=2.1e-08  Score=76.08  Aligned_cols=54  Identities=22%  Similarity=0.282  Sum_probs=47.8

Q ss_pred             CCHHHHHHhcccccccCCCCeEEEEEcCCCCeeeecCCCCCcCCCCCCCCCcEEEEecCCC
Q 028484            1 MSVESVKDKLWRKCGTSVNSMSLELYDDTNTKVAALTDNSRPLGFYSPLQGYRLHVIDLDP   61 (208)
Q Consensus         1 ~TI~~LK~KLe~itGi~p~~m~L~l~~~~g~~~~~l~dd~~~L~~y~i~~g~~IhV~D~~p   61 (208)
                      .||.+||++|+..+|+||+.|+|.+   .|+.   | +|+++|++|++++|++|||+...+
T Consensus        30 ~TV~~LK~~I~~~~gip~~~qrLi~---~Gk~---L-~D~~tL~~ygI~~gstI~l~~~~~   83 (114)
T 2kdi_A           30 DTIDNVKSKIQDKEGIPPDQQRLIW---AGKQ---L-EDGRTLSDYNIQRESTLHLVLRLR   83 (114)
T ss_dssp             CBHHHHHHHHHHHHCCCGGGEEEEE---TTEE---C-CTTCBTTTTTCCSSCEEEEEECCC
T ss_pred             CcHHHHHHHHHHHHCcChHHEEEEE---CCEE---C-CCCCcHHHCCCCCCCEEEEEEEcC
Confidence            5899999999999999999999987   4654   4 578999999999999999998653

>2fnj_B Transcription elongation factor B polypeptide 2; beta-sandwich, lectin-like, SPRY, protein transport/signaling protein complex; 1.80A {Mus musculus} SCOP: d.15.1.1 PDB: 1lm8_B 1lqb_A 1vcb_A 2c9w_B 2izv_B 2jz3_B 2xai_C 3dcg_A 3zrc_A* 3zrf_A

Probab=98.66  E-value=9.3e-09  Score=79.14  Aligned_cols=61  Identities=13%  Similarity=-0.000  Sum_probs=50.4

Q ss_pred             CCHHHHHHhcccccccCCCCeEEEEEcCCCCeeeecCCCCCcCCCCCCC-------CCcEEEEecCCCCCccCCCcccCC
Q 028484            1 MSVESVKDKLWRKCGTSVNSMSLELYDDTNTKVAALTDNSRPLGFYSPL-------QGYRLHVIDLDPSSVTSGGWLEDT   73 (208)
Q Consensus         1 ~TI~~LK~KLe~itGi~p~~m~L~l~~~~g~~~~~l~dd~~~L~~y~i~-------~g~~IhV~D~~p~s~~~~~~l~D~   73 (208)
                      .||.+||+||+.++||||++|+|.+   +|+.   | +|.++|++|+|+       .+++||++=.      ..|.|+++
T Consensus        22 dTV~~lK~kI~~~egIP~~qQrLi~---~Gk~---L-eD~~TLsdy~I~~~~a~~q~~stL~L~lr------~~g~fe~l   88 (118)
T 2fnj_B           22 STVFELKRIVEGILKRPPEEQRLYK---DDQL---L-DDGKTLGECGFTSQTARPQAPATVGLAFR------ADDTFEAL   88 (118)
T ss_dssp             SBHHHHHHHHHHHHCCCGGGEEEEE---TTEE---C-CTTSBHHHHTCCTTTSBTTBCEEEEEEEB------SSSCBCCC
T ss_pred             ChHHHHHHHHHHHhCCCHHHeEEEE---CCeE---C-CCCCCHHHcCcccccccCCCCCEEEEEec------CCCceeee
Confidence            4899999999999999999999996   5764   3 789999999999       6999999832      33556554


Q ss_pred             C
Q 028484           74 S   74 (208)
Q Consensus        74 s   74 (208)
                      .
T Consensus        89 ~   89 (118)
T 2fnj_B           89 R   89 (118)
T ss_dssp             C
T ss_pred             E
Confidence            4

>1wx8_A Riken cDNA 4931431F19; ubiquitin-like domain, ubiquilin 1-like, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1

Probab=98.65  E-value=9.8e-09  Score=74.90  Aligned_cols=54  Identities=19%  Similarity=0.206  Sum_probs=47.6

Q ss_pred             CCHHHHHHhcccccccCCCCeEEEEEcCCCCeeeecCCCCCcCCCCCCCCCcEEEEecCCC
Q 028484            1 MSVESVKDKLWRKCGTSVNSMSLELYDDTNTKVAALTDNSRPLGFYSPLQGYRLHVIDLDP   61 (208)
Q Consensus         1 ~TI~~LK~KLe~itGi~p~~m~L~l~~~~g~~~~~l~dd~~~L~~y~i~~g~~IhV~D~~p   61 (208)
                      .||.+||++|+..+|+||+.|+|.+   .|+.   | +|+++|.+|++++|++|||+...+
T Consensus        37 ~TV~~LK~~I~~~~gip~~~qrL~~---~Gk~---L-~D~~tL~~~gi~~g~~i~l~~~~~   90 (96)
T 1wx8_A           37 SNVRRFKKQISKYLHCNADRLVLIF---TGKI---L-RDQDILSQRGILDGSTVHVVVRSH   90 (96)
T ss_dssp             CCHHHHHHHHHHHTCSCTTTBCCEE---TTEE---C-CTTSCHHHHTCCTTEEEECCBCCS
T ss_pred             CCHHHHHHHHHHHhCCCHHHEEEEE---CCEE---C-CCcCCHHHCCCCCCCEEEEEEeCC
Confidence            5899999999999999999999998   4654   4 577999999999999999997643

>1wia_A Hypothetical ubiquitin-like protein (riken cDNA 2010008E23); 'structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1

Probab=98.65  E-value=5.2e-08  Score=70.93  Aligned_cols=56  Identities=20%  Similarity=0.223  Sum_probs=47.5

Q ss_pred             CCHHHHHHhcccccccCCCCeEEEEEcCCCCeeeecCCCCCcCCCCCCCCCcEEEEecCCCCCcc
Q 028484            1 MSVESVKDKLWRKCGTSVNSMSLELYDDTNTKVAALTDNSRPLGFYSPLQGYRLHVIDLDPSSVT   65 (208)
Q Consensus         1 ~TI~~LK~KLe~itGi~p~~m~L~l~~~~g~~~~~l~dd~~~L~~y~i~~g~~IhV~D~~p~s~~   65 (208)
                      .||.+||++|+..+   |+.|+|.+   .|+.   |.|++++|++|++++|++|||+...|.+..
T Consensus        28 ~TV~~LK~~i~~~~---~~~qrLi~---~Gk~---L~D~~~tL~~y~i~~g~~i~l~~~~~~~~~   83 (95)
T 1wia_A           28 DTVGTLKSKYFPGQ---ESQMKLIY---QGRL---LQDPARTLSSLNITNNCVIHCHRSPPGAAV   83 (95)
T ss_dssp             SBHHHHHHHHSSST---TTTCEEEE---TTEE---CCCSSCBTTTTTCCTTEEEEEECCCCCCCC
T ss_pred             CcHHHHHHHHHhhC---cCcEEEEE---CCEE---ccCCcCCHHHcCCCCCCEEEEEECCCCCCC
Confidence            48999999999999   99999987   4665   544449999999999999999998876543

>4dbg_A Ranbp-type and C3HC4-type zinc finger-containing; ubiquitin fold, ubiquitination, ligase; 2.71A {Homo sapiens} PDB: 2lgy_A

Probab=98.64  E-value=1.7e-08  Score=76.19  Aligned_cols=53  Identities=19%  Similarity=0.157  Sum_probs=45.3

Q ss_pred             CCHHHHHHhcccccccCCCCeEEEEEcCCCCeeeecCCCCCcCCCCCC-CCCcEEEEecCC
Q 028484            1 MSVESVKDKLWRKCGTSVNSMSLELYDDTNTKVAALTDNSRPLGFYSP-LQGYRLHVIDLD   60 (208)
Q Consensus         1 ~TI~~LK~KLe~itGi~p~~m~L~l~~~~g~~~~~l~dd~~~L~~y~i-~~g~~IhV~D~~   60 (208)
                      +||++||++|+...|+||+.|||.+   .++    +.+|+++|++|++ ++|++||+.=.+
T Consensus        47 ~TV~~LK~~I~~k~Gipp~~QRli~---ggk----ll~D~~TL~~ygI~~~G~t~hL~l~~  100 (105)
T 4dbg_A           47 MTVASLKDMVFLDYGFPPVLQQWVI---GQR----LARDQETLHSHGVRQNGDSAYLYLLS  100 (105)
T ss_dssp             CBHHHHHHHHHHHHCCCGGGEEEEE---TTE----EECTTCBTGGGTCCSTTCEEEEEECC
T ss_pred             ChHHHHHHHHHHHhCCCHHHEEEec---cCe----EccCcCcHHHcCCCCCCCEEEEEEEe
Confidence            5899999999999999999999775   344    3478999999999 599999987543

>1x1m_A Ubiquitin-like protein SB132; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.15.1.1

Probab=98.64  E-value=1.5e-08  Score=75.82  Aligned_cols=55  Identities=24%  Similarity=0.293  Sum_probs=48.5

Q ss_pred             CCHHHHHHhccccc--ccCCCC-eEEEEEcCCCCeeeecCCCCCcCCCCCCCCCcEEEEecCCCC
Q 028484            1 MSVESVKDKLWRKC--GTSVNS-MSLELYDDTNTKVAALTDNSRPLGFYSPLQGYRLHVIDLDPS   62 (208)
Q Consensus         1 ~TI~~LK~KLe~it--Gi~p~~-m~L~l~~~~g~~~~~l~dd~~~L~~y~i~~g~~IhV~D~~p~   62 (208)
                      .||.+||++|+..+  |+||+. |+|.+   .|+.   | +|+++|.+|++++|++||++...+.
T Consensus        45 ~TV~~LK~~i~~~~~~gip~~~~qrLi~---~Gk~---L-~D~~tL~~y~i~~g~~i~lv~~~~~  102 (107)
T 1x1m_A           45 YSISFLKQLIAGKLQESVPDPELIDLIY---CGRK---L-KDDQTLDFYGIQPGSTVHVLRKSWS  102 (107)
T ss_dssp             CBHHHHHHHHHHHCTTTCCCSSSEEEEE---TTEE---C-CTTCBHHHHTCCTTCEEEEEESSCC
T ss_pred             CCHHHHHHHHHHHhccCCChhhcEEEEE---CCeE---C-CCCCcHHHcCCCCCCEEEEEeCCCC
Confidence            48999999999999  999999 99987   4765   4 5779999999999999999987653

>1we7_A SF3A1 protein; structural genomics, ubiquitin-like domain, riken structural genomics/proteomics initiative, RSGI, gene regulation; NMR {Mus musculus} SCOP: d.15.1.1 PDB: 1zkh_A

Probab=98.63  E-value=1.2e-08  Score=77.28  Aligned_cols=51  Identities=20%  Similarity=0.313  Sum_probs=45.6

Q ss_pred             CCHHHHHHhcccccccCCCCeEEEEEcCCCCeeeecCCCCCcCCCCCCCCCcEEEEec
Q 028484            1 MSVESVKDKLWRKCGTSVNSMSLELYDDTNTKVAALTDNSRPLGFYSPLQGYRLHVID   58 (208)
Q Consensus         1 ~TI~~LK~KLe~itGi~p~~m~L~l~~~~g~~~~~l~dd~~~L~~y~i~~g~~IhV~D   58 (208)
                      .||.+||++|+..+||||+.|+|.+   .|+.   | +|+.+|++|++++|++||++=
T Consensus        56 ~TV~~LK~~I~~~~gip~~~QrL~~---~Gk~---L-~D~~tL~~y~i~~g~~i~lv~  106 (115)
T 1we7_A           56 DQVSVIKVKIHEATGMPAGKQKLQY---EGIF---I-KDSNSLAYYNMASGAVIHLAL  106 (115)
T ss_dssp             SBTHHHHHHHHHHSSCCTTTEEEEE---TTEE---E-CTTSBHHHHTCCSSCEEEEEE
T ss_pred             CCHHHHHHHHHHHHCCChHHEEEEE---CCEE---C-CCCCCHHHCCCCCCCEEEEEE
Confidence            4899999999999999999999998   4654   4 578999999999999999974

>1wx7_A Ubiquilin 3; ubiquitin-like domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: d.15.1.1

Probab=98.63  E-value=1.4e-08  Score=75.66  Aligned_cols=53  Identities=11%  Similarity=0.254  Sum_probs=47.0

Q ss_pred             CCHHHHHHhcccccccCCCCeEEEEEcCCCCeeeecCCCCCcCCCCCCCCCcEEEEecCC
Q 028484            1 MSVESVKDKLWRKCGTSVNSMSLELYDDTNTKVAALTDNSRPLGFYSPLQGYRLHVIDLD   60 (208)
Q Consensus         1 ~TI~~LK~KLe~itGi~p~~m~L~l~~~~g~~~~~l~dd~~~L~~y~i~~g~~IhV~D~~   60 (208)
                      .||.+||++|+..+|+|++.|+|.+   .|+.   | +|+++|.+|++++|++|||+..-
T Consensus        37 ~TV~~LK~~I~~~~gip~~~qrLi~---~Gk~---L-~D~~tL~~~gi~~g~~i~l~~~~   89 (106)
T 1wx7_A           37 CTIQQLKEEISQRFKAHPDQLVLIF---AGKI---L-KDPDSLAQCGVRDGLTVHLVIKR   89 (106)
T ss_dssp             CCHHHHHHHHHHHHTCCTTTEEEEE---TTEE---C-CTTSCHHHHTCCTTEEEEEEECC
T ss_pred             CcHHHHHHHHHHHHCcChhhEEEEE---CCEE---C-CCcCcHHHcCCCCCCEEEEEEcC
Confidence            5899999999999999999999987   4654   3 57899999999999999999754

>3rt3_B Ubiquitin-like protein ISG15; ubiquitin-like domain, isgylation, antiviral protein-viral P complex; 2.01A {Homo sapiens} PDB: 3sdl_C 3r66_C 3pse_B 1z2m_A

Probab=98.62  E-value=5.8e-08  Score=76.65  Aligned_cols=88  Identities=17%  Similarity=0.203  Sum_probs=64.5

Q ss_pred             CCHHHHHHhcccccccCCCCeEEEEEcCCCCeeeecCCCCCcCCCCCCCCCcEEEEecCC-CCCccCCCcccC-CCccee
Q 028484            1 MSVESVKDKLWRKCGTSVNSMSLELYDDTNTKVAALTDNSRPLGFYSPLQGYRLHVIDLD-PSSVTSGGWLED-TSLVEK   78 (208)
Q Consensus         1 ~TI~~LK~KLe~itGi~p~~m~L~l~~~~g~~~~~l~dd~~~L~~y~i~~g~~IhV~D~~-p~s~~~~~~l~D-~s~vek   78 (208)
                      .||.+||++|+..+|+||+.|+|.++. .|+.   | +|+.+|++|++++|++||++-.. |..+.-.  ... ..+.-.
T Consensus        23 ~tV~~lK~~I~~~~gip~~~QrL~~~~-~g~~---L-~d~~tL~~y~i~~~~~l~l~~~~~~~~m~i~--vk~~~g~~~~   95 (159)
T 3rt3_B           23 MSVSELKAQITQKIGVHAFQQRLAVHP-SGVA---L-QDRVPLASQGLGPGSTVLLVVDKSDEPLSIL--VRNNKGRSST   95 (159)
T ss_dssp             CCHHHHHHHHHHHHCCCGGGEEEEEET-TCCB---C-CTTSCGGGGTCCTTCEEEEEECCCCCCEEEE--EECTTSCEEE
T ss_pred             CcHHHHHHHHHHHhCCCHHHEEEEEcC-CCCC---C-CCCCCHHHcCCCCCCEEEEEccCCCCcEEEE--EECCCCCEEE
Confidence            489999999999999999999999552 2554   3 78999999999999999999874 3322100  111 122224


Q ss_pred             eecCHHHHhcchhhHHHHHHHhh
Q 028484           79 YTISEEEYSKRDGTFRKFKEKVL  101 (208)
Q Consensus        79 ~~ls~e~Y~~r~dtv~~~k~~~~  101 (208)
                      ++++.      .+||...|++..
T Consensus        96 ~~v~~------~~tV~~lK~~i~  112 (159)
T 3rt3_B           96 YEVRL------TQTVAHLKQQVS  112 (159)
T ss_dssp             EEECT------TSBHHHHHHHHH
T ss_pred             EEeCC------CCCHHHHHHHHH
Confidence            56654      799999998753

>1yqb_A Ubiquilin 3; structural genomics consortium, ubiquitin, ubiquitin-like domain, structural genomics, signaling protein SGC; 2.00A {Homo sapiens} SCOP: d.15.1.1

Probab=98.62  E-value=1.1e-08  Score=75.79  Aligned_cols=53  Identities=11%  Similarity=0.254  Sum_probs=47.0

Q ss_pred             CCHHHHHHhcccccccCCCCeEEEEEcCCCCeeeecCCCCCcCCCCCCCCCcEEEEecCC
Q 028484            1 MSVESVKDKLWRKCGTSVNSMSLELYDDTNTKVAALTDNSRPLGFYSPLQGYRLHVIDLD   60 (208)
Q Consensus         1 ~TI~~LK~KLe~itGi~p~~m~L~l~~~~g~~~~~l~dd~~~L~~y~i~~g~~IhV~D~~   60 (208)
                      .||.+||++|+..+|+||+.|+|.+   .|+.   | +|+++|++|++++|++|||+...
T Consensus        42 ~TV~~LK~~I~~~~gip~~~QrLi~---~Gk~---L-~D~~tL~~ygI~~gstI~l~~r~   94 (100)
T 1yqb_A           42 CTIQQLKEEISQRFKAHPDQLVLIF---AGKI---L-KDPDSLAQCGVRDGLTVHLVIKR   94 (100)
T ss_dssp             CBHHHHHHHHHHHHTCCGGGEEEEE---TTEE---C-CTTSBHHHHTCCTTCEEEEEECC
T ss_pred             CcHHHHHHHHHHHHCcChhhEEEEE---CCEE---C-CCcCcHHHCCCCCCCEEEEEEcC
Confidence            4899999999999999999999987   4654   3 57899999999999999999754

>1yx5_B Ubiquitin; proteasome, UIM, hydrolase; NMR {Homo sapiens} SCOP: d.15.1.1 PDB: 1yx6_B

Probab=98.61  E-value=3e-08  Score=72.58  Aligned_cols=54  Identities=24%  Similarity=0.299  Sum_probs=47.7

Q ss_pred             CCHHHHHHhcccccccCCCCeEEEEEcCCCCeeeecCCCCCcCCCCCCCCCcEEEEecCCC
Q 028484            1 MSVESVKDKLWRKCGTSVNSMSLELYDDTNTKVAALTDNSRPLGFYSPLQGYRLHVIDLDP   61 (208)
Q Consensus         1 ~TI~~LK~KLe~itGi~p~~m~L~l~~~~g~~~~~l~dd~~~L~~y~i~~g~~IhV~D~~p   61 (208)
                      .||.+||++|+..+|+||+.|+|.+   .|+.   | +|+++|++|++.+|++|||+...+
T Consensus        21 ~TV~~LK~~I~~~~gi~~~~qrL~~---~Gk~---L-~D~~tL~~~gi~~g~~i~l~~~~~   74 (98)
T 1yx5_B           21 DTIENVKAKIQDKEGIPPDQQRLIF---AGKQ---L-EDGRTLSDYNIQKESTLHLVLRLR   74 (98)
T ss_dssp             CBHHHHHHHHHHHTCCCGGGEEEEE---TTEE---C-CTTSBTGGGTCCTTCEEEEEECCC
T ss_pred             CcHHHHHHHHHHHHCcChhhEEEEE---CCEE---C-CCCCCHHHcCCCCCCEEEEEEeCC
Confidence            4899999999999999999999997   4655   3 568999999999999999998654

>2ojr_A Ubiquitin; lanthide-binding TAG, terbium, TB, SAD phasing, protein binding; 2.60A {Homo sapiens}

Probab=98.61  E-value=4e-08  Score=73.91  Aligned_cols=50  Identities=26%  Similarity=0.396  Sum_probs=45.0

Q ss_pred             CCHHHHHHhcccccccCCCCeEEEEEcCCCCeeeecCCCCCcCCCCCCCCCcEEEEe
Q 028484            1 MSVESVKDKLWRKCGTSVNSMSLELYDDTNTKVAALTDNSRPLGFYSPLQGYRLHVI   57 (208)
Q Consensus         1 ~TI~~LK~KLe~itGi~p~~m~L~l~~~~g~~~~~l~dd~~~L~~y~i~~g~~IhV~   57 (208)
                      .||.+||++|+..+|+||+.|+|.+   .|+.   | +|+++|++|++++|++|||+
T Consensus        56 ~TV~~LK~~I~~~~gip~~~qrLi~---~Gk~---L-~D~~tL~~~gI~~gs~I~l~  105 (111)
T 2ojr_A           56 DTIENVKAKIQDKEGIPPDQQRLIF---AGKQ---L-EDGRTLSDYNIQKESTLHLV  105 (111)
T ss_dssp             CBHHHHHHHHHHHHCCCTTTEEEEE---TTEE---C-CSSCBTTTTTCCTTCEEEEE
T ss_pred             CCHHHHHHHHHHHHCcCcccEEEEE---CCEE---C-CCCCcHHHcCCCCCCEEEEE
Confidence            4899999999999999999999987   4654   4 56899999999999999997

>4a20_A Ubiquitin-like protein MDY2; protein binding, GET-pathway, tail-anchored proteins; 1.78A {Saccharomyces cerevisiae} PDB: 2lxc_A 4goc_A

Probab=98.61  E-value=4e-08  Score=73.05  Aligned_cols=54  Identities=13%  Similarity=0.097  Sum_probs=47.9

Q ss_pred             CCHHHHHHhc-ccccccCCCCeEEEEEcCCCCeeeecCCCCCcCCCCCC-CCCcEEEEecCCC
Q 028484            1 MSVESVKDKL-WRKCGTSVNSMSLELYDDTNTKVAALTDNSRPLGFYSP-LQGYRLHVIDLDP   61 (208)
Q Consensus         1 ~TI~~LK~KL-e~itGi~p~~m~L~l~~~~g~~~~~l~dd~~~L~~y~i-~~g~~IhV~D~~p   61 (208)
                      .||.+||++| +..+|+||++|||.+   .|+.   | +|+.+|++|++ ++|.+||++=+.|
T Consensus        42 ~TV~~lK~~I~~~~~gip~~~QrLi~---~Gk~---L-~D~~tL~dy~I~~~g~ti~lmvskp   97 (98)
T 4a20_A           42 DTILQIKQHLISEEKASHISEIKLLL---KGKV---L-HDNLFLSDLKVTPANSTITVMIKPN   97 (98)
T ss_dssp             CBHHHHHHHHHHTTSCSCGGGEEEEE---TTEE---E-CTTCBGGGSCCBTTBCEEEEEECCC
T ss_pred             ChHHHHHHHHHHHhcCCChhhEEEEE---CCEE---C-cCcCCHHHcCcCCCCCEEEEEEeCC
Confidence            4899999999 999999999999998   5765   3 67899999999 9999999986655

>3u30_A Ubiquitin, linear DI-ubiquitin; immune system; 2.43A {Homo sapiens}

Probab=98.60  E-value=4.7e-08  Score=78.43  Aligned_cols=86  Identities=20%  Similarity=0.220  Sum_probs=63.9

Q ss_pred             CCHHHHHHhcccccccCCCCeEEEEEcCCCCeeeecCCCCCcCCCCCCCCCcEEEEecCCCCCccCCCccc-CCCcceee
Q 028484            1 MSVESVKDKLWRKCGTSVNSMSLELYDDTNTKVAALTDNSRPLGFYSPLQGYRLHVIDLDPSSVTSGGWLE-DTSLVEKY   79 (208)
Q Consensus         1 ~TI~~LK~KLe~itGi~p~~m~L~l~~~~g~~~~~l~dd~~~L~~y~i~~g~~IhV~D~~p~s~~~~~~l~-D~s~vek~   79 (208)
                      .||.+||+||+..+|+||+.|+|.+   .|+.   | +|+.+|++|++++|++||++-.-+..+.-.  +. ...+.-.+
T Consensus        41 ~tV~~lK~~I~~~~gip~~~QrL~~---~g~~---L-~d~~tL~~~~i~~~~~l~l~~~~~gg~~i~--Vk~~~g~~~~l  111 (172)
T 3u30_A           41 DTIENVKAKIQDKEGIPPDQQRLIF---AGKQ---L-EDGRTLSDYNIQKESTLHLVLRLRGGMQIF--VKTLTGKTITL  111 (172)
T ss_dssp             CBHHHHHHHHHHHHCCCGGGEEEEE---TTEE---C-CTTCBTGGGTCCTTCEEEEEECCCCCEEEE--EEESSCCEEEE
T ss_pred             CcHHHHHHHHHHHHCcChHHEEEEE---CCcc---c-cccCCHhHcCCcccceeeeeecccccccce--eecccCcceeE
Confidence            5899999999999999999999997   4654   3 678999999999999999997654332110  11 11222244


Q ss_pred             ecCHHHHhcchhhHHHHHHHhh
Q 028484           80 TISEEEYSKRDGTFRKFKEKVL  101 (208)
Q Consensus        80 ~ls~e~Y~~r~dtv~~~k~~~~  101 (208)
                      +++      ..+||...|++..
T Consensus       112 ~v~------~~~tV~~lK~~I~  127 (172)
T 3u30_A          112 EVE------PSDTIENVKAKIQ  127 (172)
T ss_dssp             EEC------TTCBHHHHHHHHH
T ss_pred             Eec------CCCCHHHHHHHHH
Confidence            554      4789999999753

>1uh6_A Ubiquitin-like 5; beta-grAsp fold, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: d.15.1.1

Probab=98.59  E-value=1.3e-08  Score=76.17  Aligned_cols=50  Identities=22%  Similarity=0.270  Sum_probs=45.2

Q ss_pred             CCHHHHHHhcccccccCCCCeEEEEEcCCCCeeeecCCCCCcCCCCCCCCCcEEEEe
Q 028484            1 MSVESVKDKLWRKCGTSVNSMSLELYDDTNTKVAALTDNSRPLGFYSPLQGYRLHVI   57 (208)
Q Consensus         1 ~TI~~LK~KLe~itGi~p~~m~L~l~~~~g~~~~~l~dd~~~L~~y~i~~g~~IhV~   57 (208)
                      .||.+||++|+..+||||+.|+|++   .|+.   | +|+.+|++|+|++|++||++
T Consensus        49 dTV~~lK~~Ia~k~Gip~~qQrLi~---~Gk~---L-~D~~TL~dygI~~gstlhL~   98 (100)
T 1uh6_A           49 DTIGDLKKLIAAQTGTRWNKIVLKK---WYTI---F-KDHVSLGDYEIHDGMNLELY   98 (100)
T ss_dssp             SBHHHHHHHHHHHHCCCGGGCEEEE---TTEE---C-CSSCBHHHHTCCTTEEEEEE
T ss_pred             CcHHHHHHHHHHHhCCCHHHEEEEE---CCEE---C-CCCCCHHHcCCCCCCEEEEE
Confidence            4899999999999999999999997   4765   3 67899999999999999985

>1wgg_A Ubiquitin carboxyl-terminal hydrolase 14; ubiquitin specific protease 14, USP14, ubiquitin-like fold, structural genomics; NMR {Mus musculus} SCOP: d.15.1.1

Probab=98.59  E-value=2.8e-08  Score=73.22  Aligned_cols=53  Identities=11%  Similarity=0.121  Sum_probs=45.8

Q ss_pred             CCHHHHHHhcccccccCCCCeEEEEEcCCCCeeeecCCCCCcCCCCCCCCCcEEEEecCCC
Q 028484            1 MSVESVKDKLWRKCGTSVNSMSLELYDDTNTKVAALTDNSRPLGFYSPLQGYRLHVIDLDP   61 (208)
Q Consensus         1 ~TI~~LK~KLe~itGi~p~~m~L~l~~~~g~~~~~l~dd~~~L~~y~i~~g~~IhV~D~~p   61 (208)
                      .||.+||++|+..|||||+.|+|.+   .|+.   |. |+ +|.+|++++|++||++=+..
T Consensus        28 ~TV~~lK~~I~~~tgip~~~QkLi~---~Gk~---L~-D~-tL~~~~I~~g~~i~l~~~~~   80 (96)
T 1wgg_A           28 EPPMVFKAQLFALTGVQPARQKVMV---KGGT---LK-DD-DWGNIKMKNGMTVLMMGSAD   80 (96)
T ss_dssp             SCHHHHHHHHHHHTCCCTTTSCCEE---TTEE---CC-SS-CCCSCCCCSSCEEECCCCCC
T ss_pred             CcHHHHHHHHHHHHCcCHHHeEEEE---CCcC---CC-CC-CHHHCCCCCCCEEEEEecch
Confidence            4899999999999999999999997   4665   43 45 99999999999999986543

>2lxa_A Ubiquitin-like protein MDY2; ubiquitin-like domain, protein-protein interaction, SGT2 BIN domain, GET pathway, protein binding; NMR {Saccharomyces cerevisiae}

Probab=98.59  E-value=1.5e-08  Score=73.70  Aligned_cols=52  Identities=13%  Similarity=0.111  Sum_probs=46.3

Q ss_pred             CCHHHHHHhc-ccccccCCCCeEEEEEcCCCCeeeecCCCCCcCCCCCC-CCCcEEEEecC
Q 028484            1 MSVESVKDKL-WRKCGTSVNSMSLELYDDTNTKVAALTDNSRPLGFYSP-LQGYRLHVIDL   59 (208)
Q Consensus         1 ~TI~~LK~KL-e~itGi~p~~m~L~l~~~~g~~~~~l~dd~~~L~~y~i-~~g~~IhV~D~   59 (208)
                      .||.+||+|| +..+|+||++|||.+   .|+.   | +|+.+|++|++ ++|++|||.=+
T Consensus        24 ~TV~~lK~~I~~~~~gip~~~QrLi~---~Gk~---L-~D~~tL~~y~I~~~~stl~v~~~   77 (87)
T 2lxa_A           24 DTILQIKQHLISEEKASHISEIKLLL---KGKV---L-HDNLFLSDLKVTPANSTITVMIK   77 (87)
T ss_dssp             CBHHHHHHHHHHTTSCSSSTTEEEEE---TTEE---C-CTTCBHHHHCCCGGGCEEEEEEC
T ss_pred             CcHHHHHHHHHHHhcCCChHHEEEEE---CCEE---C-cCcCCHHHcCCCCCCCEEEEEcC
Confidence            4899999999 999999999999998   5766   3 68899999999 79999999854

>1v5t_A 8430435I17RIK protein; hypothetical protein, ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1 PDB: 2kx3_A

Probab=98.56  E-value=2.4e-08  Score=72.45  Aligned_cols=52  Identities=15%  Similarity=0.118  Sum_probs=45.9

Q ss_pred             CCHHHHHHhcccccccCCCCeEEE---EEcCCCCeeeecCCCCCcCCCCCCCCCcEEEEecC
Q 028484            1 MSVESVKDKLWRKCGTSVNSMSLE---LYDDTNTKVAALTDNSRPLGFYSPLQGYRLHVIDL   59 (208)
Q Consensus         1 ~TI~~LK~KLe~itGi~p~~m~L~---l~~~~g~~~~~l~dd~~~L~~y~i~~g~~IhV~D~   59 (208)
                      .||.+||++|+..|||||+.|+|.   +   .|+.   | +|+.+|.+|++++|.+||++=+
T Consensus        28 ~TV~~lK~~I~~~~gip~~~QkLi~~k~---~Gk~---L-~D~~~L~~~~i~~g~~l~l~~~   82 (90)
T 1v5t_A           28 DTVLDLKQFLKTLTGVLPERQKLLGLKV---KGKP---A-ENDVKLGALKLKPNTKIMMMGT   82 (90)
T ss_dssp             SBHHHHHHHHHHHTCCCTTTCEEESCEE---TTEE---C-CTTSBHHHHTCCTTEEEEEECC
T ss_pred             CCHHHHHHHHHHHHCcCHHHeEEEeecc---CCcC---c-CCCCCHHHcCCCCCCEEEEEec
Confidence            489999999999999999999998   6   4654   3 5678999999999999999865

>2dzj_A Synaptic glycoprotein SC2; ubiquitin-like fold, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.56  E-value=3.3e-08  Score=71.87  Aligned_cols=54  Identities=17%  Similarity=0.068  Sum_probs=46.6

Q ss_pred             CCHHHHHHhccc-ccccCCCCeEEEEEcCCCCeeeecCCCCCcCCCCCCCCCcEEEEecC
Q 028484            1 MSVESVKDKLWR-KCGTSVNSMSLELYDDTNTKVAALTDNSRPLGFYSPLQGYRLHVIDL   59 (208)
Q Consensus         1 ~TI~~LK~KLe~-itGi~p~~m~L~l~~~~g~~~~~l~dd~~~L~~y~i~~g~~IhV~D~   59 (208)
                      .||.+||++|+. ..|+||+.|+|.+. ..|+.   | +|+.+|.+|++++|++|||-|+
T Consensus        34 ~TV~~lK~~I~~~~~~i~~~~QrL~~~-~~Gk~---L-~D~~tL~~y~i~~~stl~~KDL   88 (88)
T 2dzj_A           34 ATIAEIKNLFTKTHPQWYPARQSLRLD-PKGKS---L-KDEDVLQKLPVGTTATLYFRDL   88 (88)
T ss_dssp             CBHHHHHHHHHHHCSSSCTTTCCEESS-TTSCC---C-CTTCBTTTSSCCSEEEEEECCC
T ss_pred             CcHHHHHHHHHHHhcCCChHHeEEEec-CCCcC---c-CCCCCHHHcCCCCCCEEEEEeC
Confidence            489999999999 69999999999872 34665   3 6789999999999999999984

>1wgd_A Homocysteine-responsive endoplasmic reticulum- resident ubiquitin-like domain member...; ENDPLASMIC reticulum stress, UBL domain; NMR {Homo sapiens} SCOP: d.15.1.1

Probab=98.56  E-value=2.7e-08  Score=72.29  Aligned_cols=52  Identities=19%  Similarity=0.077  Sum_probs=46.1

Q ss_pred             CCHHHHHHhccccc--ccCCCCeEEEEEcCCCCeeeecCCCCCcCCCC--CCCCCcEEEEecC
Q 028484            1 MSVESVKDKLWRKC--GTSVNSMSLELYDDTNTKVAALTDNSRPLGFY--SPLQGYRLHVIDL   59 (208)
Q Consensus         1 ~TI~~LK~KLe~it--Gi~p~~m~L~l~~~~g~~~~~l~dd~~~L~~y--~i~~g~~IhV~D~   59 (208)
                      .||.+||++|+..+  |+||+.|+|.+   .|+.   | +|+.+|++|  +++++++||++-.
T Consensus        30 ~TV~~lK~~I~~~~~~~i~~~~QrLi~---~Gk~---L-~D~~tL~~~~~~i~~~~~i~lv~~   85 (93)
T 1wgd_A           30 WSVGHLKAHLSRVYPERPRPEDQRLIY---SGKL---L-LDHQCLRDLLPKQEKRHVLHLVCN   85 (93)
T ss_dssp             SCHHHHHHHHHHHSTTCCCTTTCEEEE---TTEE---C-CSSSCHHHHSCSSSCSEEEEEECC
T ss_pred             CcHHHHHHHHHHHhcCCCChHHeEEEE---CCEE---C-cCcCCHHHHhcCCCCCCEEEEEeC
Confidence            48999999999999  99999999997   4765   4 567899999  9999999999854

>2uyz_B Small ubiquitin-related modifier 1; sumoylation, cell division, nuclear protein, ubiquitin-like modifier, UBL conjugation pathway; 1.4A {Homo sapiens} SCOP: d.15.1.1 PDB: 2vrr_B 2iy0_B 2iy1_B 2g4d_B 2las_A 2io2_B 1z5s_B 3uip_B* 1tgz_B* 2bf8_B

Probab=98.55  E-value=2.2e-08  Score=70.17  Aligned_cols=51  Identities=10%  Similarity=0.194  Sum_probs=45.5

Q ss_pred             CCHHHHHHhcccccccCCCCeEEEEEcCCCCeeeecCCCCCcCCCCCCCCCcEEEEec
Q 028484            1 MSVESVKDKLWRKCGTSVNSMSLELYDDTNTKVAALTDNSRPLGFYSPLQGYRLHVID   58 (208)
Q Consensus         1 ~TI~~LK~KLe~itGi~p~~m~L~l~~~~g~~~~~l~dd~~~L~~y~i~~g~~IhV~D   58 (208)
                      .||.+||++++..+|+||+.|+|.+   +|+.   | +|+.+|++|++++|++||++=
T Consensus        24 ~tv~~lk~~i~~~~gi~~~~qrL~~---~G~~---L-~d~~tl~~~~i~~~~~i~l~~   74 (79)
T 2uyz_B           24 THLKKLKESYCQRQGVPMNSLRFLF---EGQR---I-ADNHTPKELGMEEEDVIEVYQ   74 (79)
T ss_dssp             SCTHHHHHHHHHHHTCCGGGEEEEE---TTEE---C-CTTCCHHHHTCCTTEEEEEEE
T ss_pred             ChHHHHHHHHHHHHCCCcccEEEEE---CCEE---e-CCCCCHHHcCCCCCCEEEEEE
Confidence            4899999999999999999999988   5765   3 577999999999999999973

>2dzm_A FAS-associated factor 1; ubiquitin-like domain, HFAF1, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.53  E-value=1.7e-08  Score=75.43  Aligned_cols=51  Identities=22%  Similarity=0.214  Sum_probs=43.5

Q ss_pred             CCHHHHHHhcccccccCCCCeEEEEEcCCCCeeeecCCCCCcCCCCCCCCCcEEEEe
Q 028484            1 MSVESVKDKLWRKCGTSVNSMSLELYDDTNTKVAALTDNSRPLGFYSPLQGYRLHVI   57 (208)
Q Consensus         1 ~TI~~LK~KLe~itGi~p~~m~L~l~~~~g~~~~~l~dd~~~L~~y~i~~g~~IhV~   57 (208)
                      .||++||++|+..|||||+.|+|.++ +.|+    + +|+++|++|++++|++||++
T Consensus        29 ~TV~~LK~~I~~~tgIpp~~QkLi~~-~~gk----L-~D~~tLs~~~I~~gstL~lv   79 (100)
T 2dzm_A           29 CTVGEIKQILENELQIPVSKMLLKGW-KTGD----V-EDSTVLKSLHLPKNNSLYVL   79 (100)
T ss_dssp             SBHHHHHHHHHHHHCCCTTTCCEECC-SSSC----C-CTTSBHHHHCCCSEEEEEEC
T ss_pred             CcHHHHHHHHHHHHCCChhHeEEEcc-CCCC----C-CCcCCHHHcCCCCCCEEEEE
Confidence            48999999999999999999999643 2344    2 67899999999999999985

>2kzr_A Ubiquitin thioesterase OTU1; structural genomics, northeast structural genomics consortiu PSI-2, protein structure initiative, hydrolase; NMR {Mus musculus}

Probab=98.52  E-value=7.3e-08  Score=69.24  Aligned_cols=59  Identities=15%  Similarity=0.101  Sum_probs=48.4

Q ss_pred             CCHHHHHHhcccccccCCCCeEEEEEcCCCCeeeecCCCCCcCCCCCCCCCcEEEEecCCC
Q 028484            1 MSVESVKDKLWRKCGTSVNSMSLELYDDTNTKVAALTDNSRPLGFYSPLQGYRLHVIDLDP   61 (208)
Q Consensus         1 ~TI~~LK~KLe~itGi~p~~m~L~l~~~~g~~~~~l~dd~~~L~~y~i~~g~~IhV~D~~p   61 (208)
                      .||.+||++|+..+||||+.|+|.+- ..++.+ .+.+++++|.+|++.+|.+|||.+..+
T Consensus        21 ~Tv~~Lk~~I~~~~gi~~~~qrL~~~-~p~k~l-~l~~~~~tL~~~gl~~g~~l~v~~~~~   79 (86)
T 2kzr_A           21 TRLRELQGQIAAITGIAPGSQRILVG-YPPECL-DLSDRDITLGDLPIQSGDMLIVEEDQT   79 (86)
T ss_dssp             CBHHHHHHHHHHHTCCCTTTCCCEES-SCCCCC-CCCCSSCBTTTSSCCTTCEEECCCCSC
T ss_pred             CCHHHHHHHHHHHhCCCccceEEEeC-CCCccc-ccCCCCCCHHHcCCCCCCEEEEEeCCC
Confidence            48999999999999999999999862 223432 233578999999999999999999764

>3l0w_B Monoubiquitinated proliferating cell nuclear antigen, proliferating cell nuclear antigen; replication, DNA damage, DNA repair; 2.80A {Saccharomyces cerevisiae} PDB: 3l10_B

Probab=98.51  E-value=6.6e-08  Score=78.20  Aligned_cols=52  Identities=23%  Similarity=0.341  Sum_probs=46.7

Q ss_pred             CCHHHHHHhcccccccCCCCeEEEEEcCCCCeeeecCCCCCcCCCCCCCCCcEEEEecC
Q 028484            1 MSVESVKDKLWRKCGTSVNSMSLELYDDTNTKVAALTDNSRPLGFYSPLQGYRLHVIDL   59 (208)
Q Consensus         1 ~TI~~LK~KLe~itGi~p~~m~L~l~~~~g~~~~~l~dd~~~L~~y~i~~g~~IhV~D~   59 (208)
                      .||.+||++|+..+|+||+.|+|.+   .|+.   | +|+++|++|++++|++||++=.
T Consensus        21 ~TV~~LK~~I~~~~gip~~~QrLi~---~Gk~---L-~D~~tL~~y~I~~gstI~Lvlr   72 (169)
T 3l0w_B           21 DTIDNVKSKIQDKEGIPPDQQRLIF---AGKQ---L-EDGRTLSDYNIQKESTLHLVLR   72 (169)
T ss_dssp             CBHHHHHHHHHHHHCCCTTTEEEEE---TTEE---C-CTTSBGGGGTCCTTCEEEEEEC
T ss_pred             CCHHHHHHHHHHHHCcCHHHEEEEE---CCcc---c-cCcCcHHHcCCCCCCEEEEEEE
Confidence            4899999999999999999999998   5765   3 6789999999999999999854

>3rt3_B Ubiquitin-like protein ISG15; ubiquitin-like domain, isgylation, antiviral protein-viral P complex; 2.01A {Homo sapiens} PDB: 3sdl_C 3r66_C 3pse_B 1z2m_A

Probab=98.50  E-value=6e-08  Score=76.54  Aligned_cols=51  Identities=18%  Similarity=0.174  Sum_probs=45.7

Q ss_pred             CCHHHHHHhcccccccCCCCeEEEEEcCCCCeeeecCCCCCcCCCCCCCCCcEEEEec
Q 028484            1 MSVESVKDKLWRKCGTSVNSMSLELYDDTNTKVAALTDNSRPLGFYSPLQGYRLHVID   58 (208)
Q Consensus         1 ~TI~~LK~KLe~itGi~p~~m~L~l~~~~g~~~~~l~dd~~~L~~y~i~~g~~IhV~D   58 (208)
                      .||++||++|+..+|+||+.|+|.+   .|+.   | +|+.+|++|++++|++||++=
T Consensus       102 ~tV~~lK~~i~~~~gip~~~q~L~~---~G~~---L-~d~~tL~~y~i~~g~~l~l~~  152 (159)
T 3rt3_B          102 QTVAHLKQQVSGLEGVQDDLFWLTF---EGKP---L-EDQLPLGEYGLKPLSTVFMNL  152 (159)
T ss_dssp             SBHHHHHHHHHHHHTCCGGGEEEEE---TTEE---C-CTTSBGGGGTCCTTCEEEEEE
T ss_pred             CCHHHHHHHHHHHHCCCHHHEEEEE---CCee---c-CCCCCHHHcCCCCCCEEEEEE
Confidence            4899999999999999999999998   5755   3 678999999999999999983

>3u5e_m 60S ribosomal protein L40; translation, ribosome, ribosomal R ribosomal protein, STM1, eukaryotic ribosome; 3.00A {Saccharomyces cerevisiae} PDB: 3u5i_m 4b6a_m 4a18_K 4a19_K 4a1b_K 4a1d_K 4adx_5 3izc_p 3izs_p 3iz5_p 3izr_p

Probab=98.49  E-value=1.5e-08  Score=78.27  Aligned_cols=51  Identities=24%  Similarity=0.362  Sum_probs=0.0

Q ss_pred             CCHHHHHHhcccccccCCCCeEEEEEcCCCCeeeecCCCCCcCCCCCCCCCcEEEEec
Q 028484            1 MSVESVKDKLWRKCGTSVNSMSLELYDDTNTKVAALTDNSRPLGFYSPLQGYRLHVID   58 (208)
Q Consensus         1 ~TI~~LK~KLe~itGi~p~~m~L~l~~~~g~~~~~l~dd~~~L~~y~i~~g~~IhV~D   58 (208)
                      .||.+||++|+..+|+||+.|+|.+   .|+.   | +|+.+|++|++++|++|||+=
T Consensus        21 ~TV~~LK~~I~~~~gip~~~QrLi~---~Gk~---L-~D~~tL~~~~I~~gsti~l~~   71 (128)
T 3u5e_m           21 DTIDNVKSKIQDKEGIPPDQQRLIF---AGKQ---L-EDGRTLSDYNIQKESTLHLVL   71 (128)
T ss_dssp             ----------------------------------------------------------
T ss_pred             CCHHHHHHHHHHHhCcChHHEEEEE---CCEE---C-CCCCchhhhccCCCCEEEEEE
Confidence            4899999999999999999999998   4665   3 678999999999999999984

>1wyw_B Ubiquitin-like protein SMT3C; hydrolase; 2.10A {Homo sapiens} SCOP: d.15.1.1 PDB: 1y8r_C* 2asq_A 2pe6_B 1a5r_A 2kqs_A 3kyc_D* 3rzw_C

Probab=98.47  E-value=4.5e-08  Score=71.94  Aligned_cols=50  Identities=10%  Similarity=0.192  Sum_probs=45.5

Q ss_pred             CCHHHHHHhcccccccCCCCeEEEEEcCCCCeeeecCCCCCcCCCCCCCCCcEEEEe
Q 028484            1 MSVESVKDKLWRKCGTSVNSMSLELYDDTNTKVAALTDNSRPLGFYSPLQGYRLHVI   57 (208)
Q Consensus         1 ~TI~~LK~KLe~itGi~p~~m~L~l~~~~g~~~~~l~dd~~~L~~y~i~~g~~IhV~   57 (208)
                      .||.+||++|+..+||||++|+|.+   +|+.   | .|+.+|++|++++|++|||+
T Consensus        42 ~tv~~lK~~i~~~~gip~~~qrLif---~Gk~---L-~d~~tl~dy~i~~g~~I~l~   91 (97)
T 1wyw_B           42 THLKKLKESYCQRQGVPMNSLRFLF---EGQR---I-ADNHTPKELGMEEEDVIEVY   91 (97)
T ss_dssp             SCTHHHHHHHHHHHTCCGGGEEEEE---TTEE---C-CTTCCHHHHTCCTTCEEEEE
T ss_pred             CcHHHHHHHHHHHHCCChhhEEEEE---CCeE---c-CCCCCHHHCCCCCCCEEEEE
Confidence            4899999999999999999999998   5776   3 57899999999999999997

>2kdb_A Homocysteine-responsive endoplasmic reticulum- resident ubiquitin-like domain member...; UBL domain, membrane, polymorphism, transmembrane; NMR {Homo sapiens}

Probab=98.47  E-value=5.4e-08  Score=72.42  Aligned_cols=50  Identities=14%  Similarity=0.083  Sum_probs=43.4

Q ss_pred             CCHHHHHHhccc-ccccCC-CCeEEEEEcCCCCeeeecCCCCCcCCCC--CCCCCcEEEEe
Q 028484            1 MSVESVKDKLWR-KCGTSV-NSMSLELYDDTNTKVAALTDNSRPLGFY--SPLQGYRLHVI   57 (208)
Q Consensus         1 ~TI~~LK~KLe~-itGi~p-~~m~L~l~~~~g~~~~~l~dd~~~L~~y--~i~~g~~IhV~   57 (208)
                      +||.+||+||+. .+|+|| ++|||++   .|+.   | +|+++|++|  ++++|++||++
T Consensus        46 ~TV~~LK~~I~~~~~g~pp~~~QrLIy---~Gk~---L-~D~~tL~~y~~~I~~~~tihLv   99 (99)
T 2kdb_A           46 WTVGKLKTHLSNVYPSKPLTKDQRLVY---SGRL---L-PDHLQLKDILRKQDEYHMVHLV   99 (99)
T ss_dssp             SBHHHHHHHHHHHSTTCCCTTTCCEEE---TTEE---E-CTTSBTHHHHTTTCSEEEEEEC
T ss_pred             CHHHHHHHHHHHHhcCCCChhhEEEEE---CCEE---C-CCCCCHHHHhcCCCCCCEEEeC
Confidence            589999999998 578876 9999998   5776   3 588999999  99999999985

>1v2y_A 3300001G02RIK protein; hypothetical protein, ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1

Probab=98.43  E-value=3.5e-08  Score=74.35  Aligned_cols=52  Identities=19%  Similarity=0.207  Sum_probs=45.5

Q ss_pred             CCHHHHHHhcccccccCC---------------CCeEEEEEcCCCCeeeecCCCCCcCCCCCCCCCcEEEEec
Q 028484            1 MSVESVKDKLWRKCGTSV---------------NSMSLELYDDTNTKVAALTDNSRPLGFYSPLQGYRLHVID   58 (208)
Q Consensus         1 ~TI~~LK~KLe~itGi~p---------------~~m~L~l~~~~g~~~~~l~dd~~~L~~y~i~~g~~IhV~D   58 (208)
                      .||.+||++|+..+|+||               .+|+|.+   .|+.   |.+|.++|.+|+|++|++||++=
T Consensus        28 ~TV~dLK~~I~~~~~i~~~~q~g~~~isw~~~w~q~~Li~---~Gk~---L~dD~~tL~dygI~~g~~l~lv~   94 (105)
T 1v2y_A           28 ATVLDLKKAIQRYVQLKQEREGGVQHISWSYVWRTYHLTS---AGEK---LTEDRKKLRDYGIRNRDEVSFIK   94 (105)
T ss_dssp             CBHHHHHHHHHHHHHHHHHHTTCCCCCCHHHHHTTEEEES---SSCE---ECCSSSBHHHHTCCSSEEEEEEE
T ss_pred             ChHHHHHHHHHHHhCCCcccccCcceeeeeecceeEEEEe---CCcC---ccCCcCCHHHcCCCCCCEEEEEe
Confidence            589999999999999998               3678986   5765   55789999999999999999985

>3q3f_A Ribonuclease/ubiquitin chimeric protein; domain SWAP, oligomerization, ubiquitin insertion, hydrolase binding; 2.17A {Bacillus amyloliquefaciens}

Probab=98.41  E-value=1e-07  Score=78.73  Aligned_cols=51  Identities=25%  Similarity=0.363  Sum_probs=45.9

Q ss_pred             CCHHHHHHhcccccccCCCCeEEEEEcCCCCeeeecCCCCCcCCCCCCCCCcEEEEec
Q 028484            1 MSVESVKDKLWRKCGTSVNSMSLELYDDTNTKVAALTDNSRPLGFYSPLQGYRLHVID   58 (208)
Q Consensus         1 ~TI~~LK~KLe~itGi~p~~m~L~l~~~~g~~~~~l~dd~~~L~~y~i~~g~~IhV~D   58 (208)
                      .||.+||++|+..+|+||+.|+|.+   .|+.   | +|+.+|++|++++|++||++=
T Consensus       126 ~TV~~LK~kI~~~~gIp~~~QrLi~---~Gk~---L-~D~~tL~dygI~~gstI~Lvl  176 (189)
T 3q3f_A          126 DTIENVKAKIQDKEGIPPDQQRLIF---AGKQ---L-EDGRTLSDYNIQKESTLHLVL  176 (189)
T ss_dssp             CBHHHHHHHHHHHHCCCGGGCCEEE---TTEE---C-CTTCBGGGGTCCTTCEEEECC
T ss_pred             CcHHHHHHHHHhccCCCHHHEEEEE---CCEE---C-CCCCCHHHCCCCCCCEEEEEE
Confidence            5899999999999999999999998   4655   3 578999999999999999984

>3b08_A Polyubiquitin-C, ubiquitin; protein complex, signaling protein-metal binding protein COM; HET: TRE; 1.70A {Homo sapiens} PDB: 2w9n_A* 3b0a_A* 3axc_A 2zvn_A 2zvo_A 2y5b_B

Probab=98.40  E-value=1.7e-07  Score=72.63  Aligned_cols=51  Identities=25%  Similarity=0.363  Sum_probs=45.6

Q ss_pred             CCHHHHHHhcccccccCCCCeEEEEEcCCCCeeeecCCCCCcCCCCCCCCCcEEEEec
Q 028484            1 MSVESVKDKLWRKCGTSVNSMSLELYDDTNTKVAALTDNSRPLGFYSPLQGYRLHVID   58 (208)
Q Consensus         1 ~TI~~LK~KLe~itGi~p~~m~L~l~~~~g~~~~~l~dd~~~L~~y~i~~g~~IhV~D   58 (208)
                      .||.+||++|+..+|+||+.|+|.+   .|+.   | +|+++|++|++++|++||++=
T Consensus        97 ~tv~~lK~~i~~~~gi~~~~qrL~~---~g~~---L-~d~~tL~~~~i~~~~~i~l~~  147 (152)
T 3b08_A           97 DTIENVKAKIQDKEGIPPDQQRLIF---AGKQ---L-EDGRTLSDYNIQKESTLHLVL  147 (152)
T ss_dssp             CBHHHHHHHHHHHHCCCGGGEEEEE---TTEE---C-CTTSBTGGGTCCTTCEEEEEE
T ss_pred             CcHHHHHHHHHHHhCcChhhEEEEE---CCEE---C-CCCCCHHHcCCCCCCEEEEEE
Confidence            4899999999999999999999997   4654   4 578999999999999999973

>3u5c_f 40S ribosomal protein S31; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3u5g_f

Probab=98.39  E-value=3.7e-08  Score=78.72  Aligned_cols=50  Identities=24%  Similarity=0.396  Sum_probs=0.0

Q ss_pred             CCHHHHHHhcccccccCCCCeEEEEEcCCCCeeeecCCCCCcCCCCCCCCCcEEEEe
Q 028484            1 MSVESVKDKLWRKCGTSVNSMSLELYDDTNTKVAALTDNSRPLGFYSPLQGYRLHVI   57 (208)
Q Consensus         1 ~TI~~LK~KLe~itGi~p~~m~L~l~~~~g~~~~~l~dd~~~L~~y~i~~g~~IhV~   57 (208)
                      .||.+||++|+..+||||+.|+|.+   .|+.   | +|+.+|++|+|++|++||++
T Consensus        21 ~TV~~LK~~I~~~~gip~~~QrLi~---~Gk~---L-~D~~tL~dygI~~gstL~Lv   70 (152)
T 3u5c_f           21 DTIDNVKSKIQDKEGIPPDQQRLIF---AGKQ---L-EDGRTLSDYNIQKESTLHLV   70 (152)
T ss_dssp             ---------------------------------------------------------
T ss_pred             CCHHHHHHHHHHHhCCCHHHEEEEE---CCEE---c-cccCcHHHcCCCCCCEEEEE
Confidence            4899999999999999999999998   4665   3 57899999999999999998

>2daf_A FLJ35834 protein; hypothetical protein FLJ35834, ubiquitin-like domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.25  E-value=3.9e-07  Score=69.96  Aligned_cols=53  Identities=13%  Similarity=0.086  Sum_probs=47.2

Q ss_pred             CCHHHHHHhcccccccCCCCeEEEEEcCCCCeeeecCCCCCcCCCCCCCCCcEEEEecCC
Q 028484            1 MSVESVKDKLWRKCGTSVNSMSLELYDDTNTKVAALTDNSRPLGFYSPLQGYRLHVIDLD   60 (208)
Q Consensus         1 ~TI~~LK~KLe~itGi~p~~m~L~l~~~~g~~~~~l~dd~~~L~~y~i~~g~~IhV~D~~   60 (208)
                      .||.+||++|...+++|++.|+|.+   +|+.   | .|+.+|.+|++++|.+||++=.+
T Consensus        37 ~TV~dLKe~ls~~~~iP~e~qrLIy---~GKi---L-KD~eTL~~~gIk~g~TIhLvi~s   89 (118)
T 2daf_A           37 TILKYLKDHFSHLLGIPHSVLQIRY---SGKI---L-KNNETLVQHGVKPQEIVQVEIFS   89 (118)
T ss_dssp             SCSHHHHHHHHHHHTCCTTTEEEEE---TTEE---E-CSSCCHHHHSCCSSCEEEEEEEE
T ss_pred             CcHHHHHHHHHhhhCCChHHEEEEE---CCeE---c-CCcchHHHcCCCCCCEEEEEEec
Confidence            4899999999999999999999998   5876   3 56889999999999999998643

>1se9_A Ubiquitin family; ubiquitin-like, cell-free, wheat GERM, structural genomics, protein structure initiative, CESG; NMR {Arabidopsis thaliana} SCOP: d.15.1.1

Probab=98.23  E-value=9.6e-07  Score=68.59  Aligned_cols=51  Identities=22%  Similarity=0.264  Sum_probs=44.5

Q ss_pred             CCHHHHHHhc-----ccccccCC--CCeEEEEEcCCCCeeeecCCCCCcCCCCCCCCC------cEEEEec
Q 028484            1 MSVESVKDKL-----WRKCGTSV--NSMSLELYDDTNTKVAALTDNSRPLGFYSPLQG------YRLHVID   58 (208)
Q Consensus         1 ~TI~~LK~KL-----e~itGi~p--~~m~L~l~~~~g~~~~~l~dd~~~L~~y~i~~g------~~IhV~D   58 (208)
                      .||.+||+||     +..+||||  ++|||++   .|+.   | +|+++|++|+++.|      .++||+=
T Consensus        38 dTV~~lK~kI~~~~p~dkegiP~~~~qQrLIy---~GK~---L-eD~~TLsdy~I~~~~~~~~v~tmhlVl  101 (126)
T 1se9_A           38 TTVSALKETVISEWPREKENGPKTVKEVKLIS---AGKV---L-ENSKTVKDYRSPVSNLAGAVTTMHVII  101 (126)
T ss_dssp             CBHHHHHHHHHHHSCTTCSSSCCSGGGEEEEE---TTEE---C-CTTSBGGGGSCCTTSCTTCCEEEEEEE
T ss_pred             CHHHHHHHHHHhhcccccccCCCChhhEEEEE---CCeE---C-cCCCcHHHcCCCcCCccCCcEEEEEEe
Confidence            4899999999     78999997  7999988   6876   3 78999999999998      7889874

>3shq_A UBLCP1; phosphatase, hydrolase; 1.96A {Drosophila melanogaster}

Probab=98.14  E-value=1.5e-06  Score=76.98  Aligned_cols=58  Identities=10%  Similarity=0.170  Sum_probs=45.1

Q ss_pred             CCHHHHHHhcccccccCCCCeEEEEEcCCCCeeeecCCCCCcCCCCCCCCCcEEEEecCCCC
Q 028484            1 MSVESVKDKLWRKCGTSVNSMSLELYDDTNTKVAALTDNSRPLGFYSPLQGYRLHVIDLDPS   62 (208)
Q Consensus         1 ~TI~~LK~KLe~itGi~p~~m~L~l~~~~g~~~~~l~dd~~~L~~y~i~~g~~IhV~D~~p~   62 (208)
                      .||++||++|+..|||||+.|+|...--.|+.    ..|+.+|++|++++|++||++=+...
T Consensus        25 ~Tv~~lK~~I~~~tgVpp~~QkLi~~k~~Gk~----l~D~~~L~~~~ik~g~~l~L~gs~~~   82 (320)
T 3shq_A           25 DTVEVLRHEIFRKTQVRPERQKLLNLKYKGKT----AADNVKISALELKPNFKLMMVGSTEA   82 (320)
T ss_dssp             SBHHHHHHHHHHHHCCCGGGCEETTCBSSSSB----CCTTSBTTSSCCC--CEEEEECCCC-
T ss_pred             CcHHHHHHHHHHHHCcCHHHeEEeecccCCcc----cCccccHHHcCCCCCCEEEEEccchh
Confidence            48999999999999999999999821004654    26789999999999999999976543

>1wgh_A Ubiquitin-like 3, HCG-1 protein; ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: d.15.1.1

Probab=98.14  E-value=3e-06  Score=64.79  Aligned_cols=51  Identities=18%  Similarity=0.205  Sum_probs=43.1

Q ss_pred             CCHHHHHHhccc------cccc--CCCCeEEEEEcCCCCeeeecCCCCCcCCCCCCCCC--cEEEEec
Q 028484            1 MSVESVKDKLWR------KCGT--SVNSMSLELYDDTNTKVAALTDNSRPLGFYSPLQG--YRLHVID   58 (208)
Q Consensus         1 ~TI~~LK~KLe~------itGi--~p~~m~L~l~~~~g~~~~~l~dd~~~L~~y~i~~g--~~IhV~D   58 (208)
                      .||.+||++|+.      .+|+  ||++|+|++   .|+.   | +|+++|++|++..+  .+||++=
T Consensus        37 ~TV~~lK~kI~~~~p~dwke~~p~p~~qqrLIy---~GK~---L-eD~~TL~~y~I~~~~~~tlhLvl   97 (116)
T 1wgh_A           37 DSASDIAKHVYDNWPMDWEEEQVSSPNILRLIY---QGRF---L-HGNVTLGALKLPFGKTTVMHLVA   97 (116)
T ss_dssp             CBHHHHHHHHHHSSSCCSSCCCCCCTTTEEEEE---TTEE---E-CSSCBTTTTTCCSSCEEEEEEEE
T ss_pred             CHHHHHHHHHHHhcccccccCCCCChHHEEEEE---CCcC---C-CCCCcHHHcCCCCCCceEEEEEc
Confidence            489999999998      7786  699999998   5876   3 68899999999766  6788884

>2gow_A HCG-1 protein, ubiquitin-like protein 3; BC059385, structural genomics, protein structure initiative, PSI; NMR {Homo sapiens}

Probab=97.99  E-value=3.8e-06  Score=65.01  Aligned_cols=51  Identities=14%  Similarity=0.169  Sum_probs=43.2

Q ss_pred             CCHHHHHHhccc------ccccC--CCCeEEEEEcCCCCeeeecCCCCCcCCCCCCCCCc--EEEEec
Q 028484            1 MSVESVKDKLWR------KCGTS--VNSMSLELYDDTNTKVAALTDNSRPLGFYSPLQGY--RLHVID   58 (208)
Q Consensus         1 ~TI~~LK~KLe~------itGi~--p~~m~L~l~~~~g~~~~~l~dd~~~L~~y~i~~g~--~IhV~D   58 (208)
                      .||.+||++|+.      .+|+|  |++|+|++   .|+.+    +|+++|++|+++.+.  +||++=
T Consensus        38 ~TV~~lK~~I~~~~p~dwke~ip~~~~~qrLIy---~GK~L----eD~~TL~~y~I~~~~~~tlhlv~   98 (125)
T 2gow_A           38 DSASDIAKHVYDNWPMDWEEEQVSSPNILRLIY---QGRFL----HGNVTLGALKLPFGKTTVMHLVA   98 (125)
T ss_dssp             SBHHHHHHHHHSSCCCSCCCCTTCCGGGEEEES---SSSEE----ESSCBTGGGCCCTTSEEEEEEEE
T ss_pred             cHHHHHHHHHHHHCCcccccCCCCChHHEEEEE---CCcCC----CCCCcHHHcCCCCCCceEEEEEe
Confidence            489999999999      88994  89999998   58863    688999999999765  678774

>1oqy_A HHR23A, UV excision repair protein RAD23 homolog A; DNA repair, proteasome-mediated degradation, protein- protein interaction, replication; NMR {Homo sapiens} SCOP: a.5.2.1 a.5.2.1 a.189.1.1 d.15.1.1 PDB: 1qze_A 1tp4_A

Probab=97.81  E-value=1.3e-05  Score=72.33  Aligned_cols=50  Identities=16%  Similarity=0.166  Sum_probs=43.3

Q ss_pred             CCHHHHHHhccc---ccccCCCCeEEEEEcCCCCeeeecCCCCCcCCCCCCCCCcEE-EEe
Q 028484            1 MSVESVKDKLWR---KCGTSVNSMSLELYDDTNTKVAALTDNSRPLGFYSPLQGYRL-HVI   57 (208)
Q Consensus         1 ~TI~~LK~KLe~---itGi~p~~m~L~l~~~~g~~~~~l~dd~~~L~~y~i~~g~~I-hV~   57 (208)
                      .||.+||.||+.   .+|||+..|+|++   .|+.   | +|+++|.+|+|++|++| |++
T Consensus        28 ~TV~~LK~~I~~~~~~~gip~~~QrLiy---~GK~---L-~D~~tL~dygI~~gstIv~lv   81 (368)
T 1oqy_A           28 ETVKVLKEKIEAEKGRDAFPVAGQKLIY---AGKI---L-SDDVPIRDYRIDEKNFVVVMV   81 (368)
T ss_dssp             CBHHHHHHHHHHHTCSSSCCSTEEEEES---SSSE---E-CSSSBTTTTCCCTTSCEEEEE
T ss_pred             ChHHHHHHHHHHHhCcCCCChhheEEEE---CCee---c-CCcCCHHHcCCCCCCEEEEEE
Confidence            489999999999   7899999999987   4776   3 57799999999999998 444

>2io1_B Small ubiquitin-related modifier 3 precursor; SUMO, SENP, ULP, complex, protein binding, hydrolase; 2.60A {Homo sapiens} SCOP: d.15.1.1

Probab=97.60  E-value=6e-05  Score=55.22  Aligned_cols=51  Identities=6%  Similarity=0.139  Sum_probs=45.6

Q ss_pred             CHHHHHHhcccccccCCCCeEEEEEcCCCCeeeecCCCCCcCCCCCCCCCcEEEEecC
Q 028484            2 SVESVKDKLWRKCGTSVNSMSLELYDDTNTKVAALTDNSRPLGFYSPLQGYRLHVIDL   59 (208)
Q Consensus         2 TI~~LK~KLe~itGi~p~~m~L~l~~~~g~~~~~l~dd~~~L~~y~i~~g~~IhV~D~   59 (208)
                      +++.|+++.....|+||++++|.+   +|+.+    +++.|+.+|++++|.+|||+=.
T Consensus        29 ~l~kl~~~y~~~~gi~~~~~rf~F---dG~~l----~~~~Tp~dl~medgD~Idv~~~   79 (94)
T 2io1_B           29 PLSKLMKAYCERQGLSMRQIRFRF---DGQPI----NETDTPAQLEMEDEDTIDVFQQ   79 (94)
T ss_dssp             CTHHHHHHHHHHHTCCGGGEEEEE---TTEEC----CTTCCTTTTTCCTTCEEEEEEC
T ss_pred             HHHHHHHHHHHHhCCCcccEEEEE---CCEEc----CCCCCHHHcCCCCCCEEEEEEe
Confidence            688999999999999999999998   68763    5678999999999999999853

>2xzm_9 RPS31E; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_9

Probab=97.53  E-value=1.2e-05  Score=66.28  Aligned_cols=45  Identities=16%  Similarity=0.150  Sum_probs=0.0

Q ss_pred             CCHHHHHHhcccccccCCCCeEEEEEcCCCCeeeecCCCCCcCCCCCCCCCcEEEEe
Q 028484            1 MSVESVKDKLWRKCGTSVNSMSLELYDDTNTKVAALTDNSRPLGFYSPLQGYRLHVI   57 (208)
Q Consensus         1 ~TI~~LK~KLe~itGi~p~~m~L~l~~~~g~~~~~l~dd~~~L~~y~i~~g~~IhV~   57 (208)
                      .||.+||++|+..+||||++|+|++   .|+.   | +|+.+|+     ++++||++
T Consensus        21 dTV~~LK~kI~~keGIP~~qQRLIf---~GK~---L-eD~~TLs-----~~STLhLv   65 (189)
T 2xzm_9           21 TSVLDLKSQISQDMGFEIDMMTLVN---NGFI---A-PNTELVT-----DDVTYYLS   65 (189)
T ss_dssp             ---------------------------------------------------------
T ss_pred             ChHHHHHHHHHHHhCcChhHEEEEe---cCeE---C-CCCCccc-----CCCEEEEE
Confidence            4899999999999999999999998   4765   3 5678887     88999987

>1wm3_A Ubiquitin-like protein SMT3B; ubiquitin fold, half-open barrel, two helices, protein transport; 1.20A {Homo sapiens} SCOP: d.15.1.1 PDB: 1wm2_A 3uin_B 3uio_B 2ckh_B

Probab=97.50  E-value=0.00013  Score=50.53  Aligned_cols=49  Identities=6%  Similarity=0.149  Sum_probs=43.9

Q ss_pred             CHHHHHHhcccccccCCCCeEEEEEcCCCCeeeecCCCCCcCCCCCCCCCcEEEEe
Q 028484            2 SVESVKDKLWRKCGTSVNSMSLELYDDTNTKVAALTDNSRPLGFYSPLQGYRLHVI   57 (208)
Q Consensus         2 TI~~LK~KLe~itGi~p~~m~L~l~~~~g~~~~~l~dd~~~L~~y~i~~g~~IhV~   57 (208)
                      +++.|+++.....|+++++++|.+   +|+.+    .++.|..+|++++|.+|||.
T Consensus        23 ~l~kl~~~y~~~~gi~~~~~rf~f---dG~~l----~~~~Tp~~l~medgD~Idv~   71 (72)
T 1wm3_A           23 PLSKLMKAYCERQGLSMRQIRFRF---DGQPI----NETDTPAQLEMEDEDTIDVF   71 (72)
T ss_dssp             CTHHHHHHHHHHHTCCTTTCEEEE---TTEEC----CTTCCTTTTTCCTTEEEEEE
T ss_pred             hHHHHHHHHHHHhCCCcceEEEEE---CCEEc----CCCCCHHHcCCCCCCEEEEE
Confidence            678899999999999999999998   68763    56789999999999999985

>2io0_B Small ubiquitin-related modifier 2 precursor; SUMO, SENP, ULP, complex, protein binding, hydrolase; 2.30A {Homo sapiens} SCOP: d.15.1.1

Probab=97.31  E-value=0.00029  Score=51.26  Aligned_cols=51  Identities=6%  Similarity=0.139  Sum_probs=45.3

Q ss_pred             CHHHHHHhcccccccCCCCeEEEEEcCCCCeeeecCCCCCcCCCCCCCCCcEEEEecC
Q 028484            2 SVESVKDKLWRKCGTSVNSMSLELYDDTNTKVAALTDNSRPLGFYSPLQGYRLHVIDL   59 (208)
Q Consensus         2 TI~~LK~KLe~itGi~p~~m~L~l~~~~g~~~~~l~dd~~~L~~y~i~~g~~IhV~D~   59 (208)
                      +++.|+++.....|+++++++|.+   +|+.+    .++.|..+|++++|.+|+|+=.
T Consensus        27 ~l~kl~~~y~~~~gi~~~~~rf~F---dG~~l----~~~~Tp~dl~medgD~Idv~~~   77 (91)
T 2io0_B           27 PLSKLMKAYCERQGLSMRQIRFRF---DGQPI----NETDTPAQLEMEDEDTIDVFQQ   77 (91)
T ss_dssp             CTHHHHHHHHHHTTCCSTTEEEEE---TTEEC----CTTCCTTTTTCCTTEEEEEEEC
T ss_pred             hHHHHHHHHHHHhCCCcccEEEEE---CCEEc----CCCCCHHHcCCCCCCEEEEEEe
Confidence            678899999999999999999998   68764    5678999999999999999843

>3a4r_A Nfatc2-interacting protein; ubiquitin fold, coiled coil, cytoplasm, methylation, nucleus, transcription; 1.00A {Mus musculus} PDB: 3a4s_C 3rd2_A

Probab=97.23  E-value=0.00017  Score=50.98  Aligned_cols=49  Identities=14%  Similarity=0.083  Sum_probs=44.1

Q ss_pred             CHHHHHHhcccccccCCCCeEEEEEcCCCCeeeecCCCCCcCCCCCCCCCcEEEEe
Q 028484            2 SVESVKDKLWRKCGTSVNSMSLELYDDTNTKVAALTDNSRPLGFYSPLQGYRLHVI   57 (208)
Q Consensus         2 TI~~LK~KLe~itGi~p~~m~L~l~~~~g~~~~~l~dd~~~L~~y~i~~g~~IhV~   57 (208)
                      +++.|+.+.....|+++++++|.+   +|+.+    .++.|..+|++++|.+|||.
T Consensus        30 ~l~kl~~~y~~~~gi~~~~~rf~f---dG~~l----~~~~Tp~~l~medgD~Idv~   78 (79)
T 3a4r_A           30 PLKVLMSHYEEAMGLSGHKLSFFF---DGTKL----SGKELPADLGLESGDLIEVW   78 (79)
T ss_dssp             CHHHHHHHHHHHHTCTTCCCEEEE---TTEEC----CSCCCHHHHTCCTTCEEEEE
T ss_pred             hHHHHHHHHHHHhCCCcccEEEEE---CCEEc----CCCCCHHHcCCCCCCEEEEe
Confidence            688999999999999999999998   68763    56789999999999999985

>2d07_B Ubiquitin-like protein SMT3B; hydrolase; 2.10A {Homo sapiens} SCOP: d.15.1.1 PDB: 2rpq_A 2awt_A 2io3_B 2iyd_B 1u4a_A 2k1f_A

Probab=97.23  E-value=0.00036  Score=50.83  Aligned_cols=50  Identities=6%  Similarity=0.152  Sum_probs=44.6

Q ss_pred             CHHHHHHhcccccccCCCCeEEEEEcCCCCeeeecCCCCCcCCCCCCCCCcEEEEec
Q 028484            2 SVESVKDKLWRKCGTSVNSMSLELYDDTNTKVAALTDNSRPLGFYSPLQGYRLHVID   58 (208)
Q Consensus         2 TI~~LK~KLe~itGi~p~~m~L~l~~~~g~~~~~l~dd~~~L~~y~i~~g~~IhV~D   58 (208)
                      ++..|+.+.....|+++++++|.+   +|+.+    .++.|..+|++++|.+|||+=
T Consensus        39 ~l~kl~~~y~~~~gi~~~~~rf~f---dG~~l----~~~~Tp~dl~medgD~Idv~~   88 (93)
T 2d07_B           39 PLSKLMKAYCERQGLSMRQIRFRF---DGQPI----NETDTPAQLEMEDEDTIDVFQ   88 (93)
T ss_dssp             CHHHHHHHHHHHHTCCGGGEEEEE---TTEEC----CTTCCTTTTTCCTTEEEEEEE
T ss_pred             HHHHHHHHHHHHhCCCccceEEEE---CCEEc----CCCCCHHHcCCCCCCEEEEEe
Confidence            688999999999999999999998   68763    567899999999999999973

>1wz0_A Ubiquitin-like protein SMT3B; SUMO-2, ubiquitin-like molecule, structural genomics, sentrin2, NPPFSA; NMR {Homo sapiens} SCOP: d.15.1.1

Probab=97.07  E-value=0.00044  Score=51.61  Aligned_cols=50  Identities=6%  Similarity=0.152  Sum_probs=44.8

Q ss_pred             CHHHHHHhcccccccCCCCeEEEEEcCCCCeeeecCCCCCcCCCCCCCCCcEEEEec
Q 028484            2 SVESVKDKLWRKCGTSVNSMSLELYDDTNTKVAALTDNSRPLGFYSPLQGYRLHVID   58 (208)
Q Consensus         2 TI~~LK~KLe~itGi~p~~m~L~l~~~~g~~~~~l~dd~~~L~~y~i~~g~~IhV~D   58 (208)
                      ++..|+.+.....|+++++++|.|   +|+.+    .+..|..+|++++|.+|||+=
T Consensus        46 ~l~kL~~~y~ek~gi~~~~~rf~F---dG~~l----~~~~Tp~dl~medgD~Idv~~   95 (104)
T 1wz0_A           46 PLSKLMKAYCERQGLSMRQIRFRF---DGQPI----NETDTPAQLEMEDEDTIDVFQ   95 (104)
T ss_dssp             CHHHHHHHHHHHHTCCTTTSCEES---SSSBC----CTTSCTTTTTCCTTEEEEECC
T ss_pred             hHHHHHHHHHHHhCCCcceEEEEE---CCEEc----CCCCCHHHcCCCCCCEEEEEE
Confidence            688999999999999999999998   68773    567899999999999999984

>2eke_C Ubiquitin-like protein SMT3; UBC9, SUMO binding motif, SBM, ligase/protein binding complex; 1.90A {Saccharomyces cerevisiae} SCOP: d.15.1.1

Probab=96.88  E-value=0.00099  Score=49.93  Aligned_cols=50  Identities=4%  Similarity=0.096  Sum_probs=44.3

Q ss_pred             CHHHHHHhcccccccCCCCeEEEEEcCCCCeeeecCCCCCcCCCCCCCCCcEEEEec
Q 028484            2 SVESVKDKLWRKCGTSVNSMSLELYDDTNTKVAALTDNSRPLGFYSPLQGYRLHVID   58 (208)
Q Consensus         2 TI~~LK~KLe~itGi~p~~m~L~l~~~~g~~~~~l~dd~~~L~~y~i~~g~~IhV~D   58 (208)
                      ++..|+.+.....|+++++++|.|   +|+.+    .++.|..+|++++|.+|+|+=
T Consensus        52 ~l~kL~~ay~ek~gi~~~~~rF~F---dG~rl----~~~~Tp~dl~medgD~Idv~~  101 (106)
T 2eke_C           52 PLRRLMEAFAKRQGKEMDSLRFLY---DGIRI----QADQTPEDLDMEDNDIIEAHR  101 (106)
T ss_dssp             CTHHHHHHHHHHHTCCGGGEEEEE---TTEEC----CTTCCTTTTTCCTTEEEEEEE
T ss_pred             HHHHHHHHHHHHhCCCcccEEEEE---CCeEc----CCCCCHHHcCCCCCCEEEEEe
Confidence            678899999999999999999998   68763    567899999999999999973

>4efo_A Serine/threonine-protein kinase TBK1; ubiquitin like domain, transferase; 1.77A {Homo sapiens}

Probab=96.48  E-value=0.0014  Score=48.26  Aligned_cols=41  Identities=7%  Similarity=0.204  Sum_probs=32.0

Q ss_pred             CHHHHHHhcccccccCCCCeEEEEEcCCCCeeeecCCCCCcCCCCC
Q 028484            2 SVESVKDKLWRKCGTSVNSMSLELYDDTNTKVAALTDNSRPLGFYS   47 (208)
Q Consensus         2 TI~~LK~KLe~itGi~p~~m~L~l~~~~g~~~~~l~dd~~~L~~y~   47 (208)
                      ||..||++|+..|||||++|+|.+   .|+.+. + +.+++...|+
T Consensus        35 tv~~~ke~V~eqTgIp~~~Q~LL~---eg~~l~-l-~p~~~a~~~p   75 (94)
T 4efo_A           35 TATIFHELVYKQTKIISSNQELIY---EGRRLV-L-EPGRLAQHFP   75 (94)
T ss_dssp             BHHHHHHHHHHHHCCCGGGEEEEE---TTEEEC-C-CTTCBGGGSC
T ss_pred             HHHHHHHHHHHHhCCCHHHHHHHh---CCCccc-c-CCCCccccCC
Confidence            799999999999999999999998   566543 3 4555555554

>2k8h_A Small ubiquitin protein; SUMO, post-translational modifier, signaling protein; NMR {Trypanosoma brucei}

Probab=96.42  E-value=0.00064  Score=51.29  Aligned_cols=50  Identities=16%  Similarity=0.193  Sum_probs=44.8

Q ss_pred             CHHHHHHhcccccccCCCCeEEEEEcCCCCeeeecCCCCCcCCCCCCCCCcEEEEec
Q 028484            2 SVESVKDKLWRKCGTSVNSMSLELYDDTNTKVAALTDNSRPLGFYSPLQGYRLHVID   58 (208)
Q Consensus         2 TI~~LK~KLe~itGi~p~~m~L~l~~~~g~~~~~l~dd~~~L~~y~i~~g~~IhV~D   58 (208)
                      ++..|+.+.....|+++++++|.|   +|+.+    .+..|..+|++++|.+|+|+=
T Consensus        48 ~l~kL~~ay~ek~gi~~~~~rfiF---dG~~L----~~~~Tp~dl~mEDgD~Idv~~   97 (110)
T 2k8h_A           48 ALKKLIDTYCKKQGISRNSVRFLF---DGTPI----DETKTPEELGMEDDDVIDAMV   97 (110)
T ss_dssp             SHHHHHHHHHHHHTCCSSSCEEES---SSCBC----CSSSHHHHHHCSSEEEEEEEC
T ss_pred             hHHHHHHHHHHHhCCCcccEEEEE---CCEEc----CCCCCHHHcCCCCCCEEEEEE
Confidence            688999999999999999999998   68774    567899999999999999984

>2pjh_A Protein NPL4, nuclear protein localization protein 4 homolog; UFD1, NPL4, AAA, protein binding, transport protein; NMR {Mus musculus}

Probab=95.89  E-value=0.0019  Score=45.73  Aligned_cols=55  Identities=15%  Similarity=0.221  Sum_probs=42.4

Q ss_pred             CCHHHHHHhcccccccCCCCeEEEEEcCCCCeeeecCCCCCcCCCCCCCCCcEEEEe
Q 028484            1 MSVESVKDKLWRKCGTSVNSMSLELYDDTNTKVAALTDNSRPLGFYSPLQGYRLHVI   57 (208)
Q Consensus         1 ~TI~~LK~KLe~itGi~p~~m~L~l~~~~g~~~~~l~dd~~~L~~y~i~~g~~IhV~   57 (208)
                      .|+.+|++||...+++++..+.|.+-.+-...+  ....+.+|.++++++|..|+|.
T Consensus        24 ~t~~~L~~~I~~~~~i~~~~~~l~~~~~p~~~l--~~~~~~~l~~lgl~hGd~l~l~   78 (80)
T 2pjh_A           24 ETAATFLKKVAKEFGFQNNGFSVYINRNKTGEI--TASSSKSLHLLKIKHGDLLFLF   78 (80)
T ss_dssp             CCHHHHHHHHHHHTCCCTTTCCCCCSCCGGGGS--SSCCCCTTTTTCCCTTCCEEC-
T ss_pred             ChHHHHHHHHHHHcCCCCCcceEEecCCCCCcc--cCCCCCCHHHcCCCCCCEEEEe
Confidence            489999999999999999999888743321111  1237889999999999999875

>3kyd_D Small ubiquitin-related modifier 1; SUMO, thioester, adenylation, inhibitor, TETR intermediate, ligase, nucleus, phosphoprotein; HET: VMX; 2.61A {Homo sapiens} SCOP: d.15.1.1

Probab=95.30  E-value=0.024  Score=43.00  Aligned_cols=49  Identities=10%  Similarity=0.202  Sum_probs=43.3

Q ss_pred             CHHHHHHhcccccccCCCCeEEEEEcCCCCeeeecCCCCCcCCCCCCCCCcEEEEe
Q 028484            2 SVESVKDKLWRKCGTSVNSMSLELYDDTNTKVAALTDNSRPLGFYSPLQGYRLHVI   57 (208)
Q Consensus         2 TI~~LK~KLe~itGi~p~~m~L~l~~~~g~~~~~l~dd~~~L~~y~i~~g~~IhV~   57 (208)
                      ++.-|+.......|+++.++++.|   +|..+    +++.|..++++++|.+|+|.
T Consensus        62 ~L~KLm~aY~er~Gl~~~~irFlF---DG~rI----~~~~TP~dL~MEDgD~IdV~  110 (115)
T 3kyd_D           62 HLKKLKESYCQRQGVPMNSLRFLF---EGQRI----ADNHTPKELGMEEEDVIEVY  110 (115)
T ss_dssp             CTHHHHHHHHHHHTCCTTSEEEEE---TTEEC----CTTCCTTTTTCCTTCEEEEE
T ss_pred             hHHHHHHHHHHHhCCChhhEEEEE---CCeEC----CCCCCHHHcCCCCCCEEEEE
Confidence            577889999999999999999998   68764    56789999999999999987

>3pge_A SUMO-modified proliferating cell nuclear antigen; DNA replication, DNA binding protein; 2.80A {Saccharomyces cerevisiae}

Probab=94.91  E-value=0.024  Score=46.88  Aligned_cols=50  Identities=4%  Similarity=0.096  Sum_probs=44.8

Q ss_pred             CHHHHHHhcccccccCCCCeEEEEEcCCCCeeeecCCCCCcCCCCCCCCCcEEEEec
Q 028484            2 SVESVKDKLWRKCGTSVNSMSLELYDDTNTKVAALTDNSRPLGFYSPLQGYRLHVID   58 (208)
Q Consensus         2 TI~~LK~KLe~itGi~p~~m~L~l~~~~g~~~~~l~dd~~~L~~y~i~~g~~IhV~D   58 (208)
                      ++..|+.......|+++.++|+.+   +|+.+    .+..|..++++++|.+|+|.=
T Consensus        50 ~l~kL~~ay~er~Gi~~~~~RF~F---dG~rI----~~~~TP~dL~MEdgD~Idv~~   99 (200)
T 3pge_A           50 PLRRLMEAFAKRQGKEMDSLRFLY---DGIRI----QADQTPEDLDMEDNDIIEAHR   99 (200)
T ss_dssp             CTHHHHHHHHHHHSSCGGGEEEEE---TTEEC----CTTCCTTTTTCCTTEEEEEEE
T ss_pred             HHHHHHHHHHHHhCCChhhEEEEE---CCEEc----CCCCCHHHcCCCCCCEEEEEe
Confidence            678899999999999999999998   68774    578899999999999999984

>3tix_A Ubiquitin-like protein SMT3, RNA-induced transcri silencing complex protein TAS3; PIN, rossmann fold, SPOC, alpha-helical hairpin, heterochrom silencing, RITS, RNAI, argonaute; 2.90A {Saccharomyces cerevisiae}

Probab=93.80  E-value=0.05  Score=45.06  Aligned_cols=51  Identities=4%  Similarity=0.077  Sum_probs=44.8

Q ss_pred             CHHHHHHhcccccccCCCCeEEEEEcCCCCeeeecCCCCCcCCCCCCCCCcEEEEecC
Q 028484            2 SVESVKDKLWRKCGTSVNSMSLELYDDTNTKVAALTDNSRPLGFYSPLQGYRLHVIDL   59 (208)
Q Consensus         2 TI~~LK~KLe~itGi~p~~m~L~l~~~~g~~~~~l~dd~~~L~~y~i~~g~~IhV~D~   59 (208)
                      ++..|+.......|+++.++++.+   +|+.+    +++.|..+++++||.+|+|.=.
T Consensus        78 pL~KLmeAYcERqGL~~~sIRFLF---DGqRI----~~ddTPeDLdMEDGDtIDV~le  128 (207)
T 3tix_A           78 PLRRLMEAFAKRQGKEMDSLTFLY---DGIEI----QADQTPEDLDMEDNDIIEAHRE  128 (207)
T ss_dssp             CTHHHHHHHHHHTTCCGGGSCEEE---TTEEC----CSSCCTTTTTCCTTEEEEECCC
T ss_pred             hHHHHHHHHHHHhCCCcccEEEEE---CCeec----CCCCCHHHcCCCCCCEEEEEEe
Confidence            577899999999999999999998   78774    5688999999999999999853

>3jyu_A Ubiquitin carboxyl-terminal hydrolase; domain in ubiquitin-specific peptidases (DUSP), proto- oncogene, ubiquitin-fold, UBL, protease, thioesterase; HET: 1PS; 2.37A {Mus musculus}

Probab=92.30  E-value=0.22  Score=41.54  Aligned_cols=59  Identities=12%  Similarity=0.059  Sum_probs=48.7

Q ss_pred             CCHHHHHHhcccccccCCC-CeEEEEEcCCCCeeeecCCCCCcCCCCCCCCCcEEEEecCC
Q 028484            1 MSVESVKDKLWRKCGTSVN-SMSLELYDDTNTKVAALTDNSRPLGFYSPLQGYRLHVIDLD   60 (208)
Q Consensus         1 ~TI~~LK~KLe~itGi~p~-~m~L~l~~~~g~~~~~l~dd~~~L~~y~i~~g~~IhV~D~~   60 (208)
                      .||.+|+.++-.+++|+++ .+||..+....+. ..|.+.+.+|.++++.++..|.|.=-|
T Consensus       162 ~ti~~l~~~~~~~~~i~~~~~~RLW~~~~~~~~-~~L~~~~~tl~d~~L~~~Q~illE~r~  221 (231)
T 3jyu_A          162 DTIATIEKEMRKLFNIPAERETRLWNKYMSNTY-EQLSKLDNTIQDAGLYQGQVLVIEPQN  221 (231)
T ss_dssp             CBHHHHHHHHHHHTTCCTTSCEEEEECSSSSSC-EECCCTTSBTTTTTCCTTEEEEEEECC
T ss_pred             CcHHHHHHHHHHHhCCCCCCeEEEEEecCCCCH-hhhcCCCCCHHHhCCCCCCEEEEEEec
Confidence            4899999999999999997 6999987544333 447778899999999999988777554

>3h6n_A Plexin-D1; structural genomics consortium, SGC, membrane, transmembrane, receptor, alternative splicing, cell membrane, glycoprotein, polymorphism; 2.00A {Homo sapiens}

Probab=92.05  E-value=0.36  Score=37.10  Aligned_cols=56  Identities=21%  Similarity=0.348  Sum_probs=38.2

Q ss_pred             CCHHHHHHhc----ccccccC----CCCeEEEEEcCCCCeeeecCC-C-----------CCcCCCCCCCCCcEEEEe
Q 028484            1 MSVESVKDKL----WRKCGTS----VNSMSLELYDDTNTKVAALTD-N-----------SRPLGFYSPLQGYRLHVI   57 (208)
Q Consensus         1 ~TI~~LK~KL----e~itGi~----p~~m~L~l~~~~g~~~~~l~d-d-----------~~~L~~y~i~~g~~IhV~   57 (208)
                      .||.|+|+||    |.-+..+    +.+|.|..+......+. |.| |           -.||+.|++.||++|-++
T Consensus        27 DTItQvKeKiLd~vyk~~p~S~rP~~~~~dLEwr~g~~~~~i-L~D~D~ts~~~~~~krLNTL~HY~V~dgatv~l~  102 (127)
T 3h6n_A           27 DTLTQVKEKILEAFCKNVPYSQWPRAEDVDLEWFASSTQSYI-LRDLDDTSVVEDGRKKLNTLAHYKIPEGASLAMS  102 (127)
T ss_dssp             SBHHHHHHHHHHHHSTTSCGGGSCCGGGEEEEEECSSSCEEE-CCSSSTTSCEETTEECCCBTTTTTCCTTCEEEEE
T ss_pred             CchhhhhHHHHHHHhccCCcccCCCCcccceEEecCCCCceE-eecCCCcceecCceeEeccccccCCCCCCEEEEE
Confidence            4899999998    5544443    56889998754322221 211 1           248999999999999887

>4a3p_A Ubiquitin carboxyl-terminal hydrolase 15; 1.40A {Homo sapiens} PDB: 4a3o_A 3pv1_A 3ppa_A* 3t9l_A 3lmn_A

Probab=91.78  E-value=0.11  Score=42.84  Aligned_cols=59  Identities=10%  Similarity=0.068  Sum_probs=48.8

Q ss_pred             CCHHHHHHhcccccccCCC-CeEEEEEcCCCCeeeecCCCCCcCCCCCCCCCcEEEEecCC
Q 028484            1 MSVESVKDKLWRKCGTSVN-SMSLELYDDTNTKVAALTDNSRPLGFYSPLQGYRLHVIDLD   60 (208)
Q Consensus         1 ~TI~~LK~KLe~itGi~p~-~m~L~l~~~~g~~~~~l~dd~~~L~~y~i~~g~~IhV~D~~   60 (208)
                      .||.+|+.++-.+++|++. .+||..+...+ ....|++.+.+|.++++.++..|-|.=.|
T Consensus       150 ~ti~~l~~~~~~~~~i~~~~~~RlW~~~~~~-~~~~L~~~~~tl~~~~l~~~Q~illE~r~  209 (217)
T 4a3p_A          150 DTIDTIEKEIRKIFSIPDEKETRLWNKYMSN-TFEPLNKPDSTIQDAGLYQGQVLVIEQKN  209 (217)
T ss_dssp             SBHHHHHHHHHHHTTCCTTSCEEEEEEEETT-EEEECCCTTSBHHHHTCCTTCEEEEEECC
T ss_pred             chHHHHHHHHHHHhCCCCCCceEEEEecCCC-CeeecCCCCCCHHHhCCCCCCEEEEEEec
Confidence            4899999999999999997 79999865444 33557777899999999999998877554

>4e74_A Plexin-A4; RBD, structural genomics, structural genomics consor SGC, signaling protein; 1.58A {Homo sapiens} PDB: 3q3j_A*

Probab=91.65  E-value=0.19  Score=38.21  Aligned_cols=57  Identities=18%  Similarity=0.350  Sum_probs=36.7

Q ss_pred             CCHHHHHHhc----ccccccC----CCCeEEEEEcCCCCeeeecCCC-----------CCcCCCCCCCCCcEEEEe
Q 028484            1 MSVESVKDKL----WRKCGTS----VNSMSLELYDDTNTKVAALTDN-----------SRPLGFYSPLQGYRLHVI   57 (208)
Q Consensus         1 ~TI~~LK~KL----e~itGi~----p~~m~L~l~~~~g~~~~~l~dd-----------~~~L~~y~i~~g~~IhV~   57 (208)
                      .||.|+|+||    |.-+..+    +.+|.|.++...+..+.--+.|           -.+|+.|++.||++|-++
T Consensus        37 DTItQvKeKiLd~vyk~~p~S~rP~~~~~dLEwr~g~~~~~iL~D~D~ts~~~~~wkrLNTL~HY~V~dgatl~l~  112 (117)
T 4e74_A           37 DTITQVKEKILDAIFKNVPCSHRPKAADMDLEWRQGSGARMILQDEDITTKIENDWKRLNTLAHYQVPDGSVVALV  112 (117)
T ss_dssp             SBHHHHHHHHHHHHTTTSCGGGSCCGGGEEEEEECTTSCEEEECSSSTTCCC---CCCCCBHHHHTCCTTCEEEEE
T ss_pred             CchHHHHHHHHHHHhcCCCcccCCCCCceeEEEecCCCCceEeecCCCccEecCcceEeccccccCCCCCCEEEEE
Confidence            4899999998    4433333    4578888876533232101111           237889999999998875

>2r2o_A Plexin-B1; effector domain, structural genomics, structural GEN consortium, SGC, glycoprotein, membrane, phosphorylation, R secreted, transmembrane; 2.00A {Homo sapiens} PDB: 2rex_A* 2jph_A

Probab=91.09  E-value=0.19  Score=39.26  Aligned_cols=59  Identities=12%  Similarity=0.248  Sum_probs=38.2

Q ss_pred             CCHHHHHHhccccc--cc------CCCCeEEEEEcCCCCeeeecCCCC-----------CcCCCCCCCCCcEEEEecC
Q 028484            1 MSVESVKDKLWRKC--GT------SVNSMSLELYDDTNTKVAALTDNS-----------RPLGFYSPLQGYRLHVIDL   59 (208)
Q Consensus         1 ~TI~~LK~KLe~it--Gi------~p~~m~L~l~~~~g~~~~~l~dd~-----------~~L~~y~i~~g~~IhV~D~   59 (208)
                      .||.|+|+||-.-.  |+      .+.++.|..+.+.+..+.--+.|.           .+|+.|++.||++|-++=.
T Consensus        51 DTItQvKeKiLDavYk~~PySqRP~~~d~dLEwr~g~~g~liL~D~D~tS~~~~~wkrLNTL~HY~V~Dga~l~l~~~  128 (138)
T 2r2o_A           51 DTISQAKEKMLDQLYKGVPLTQRPDPRTLDVEWRSGVAGHLILSDEDVTSEVQGLWRRLNTLQHYKVPDGATVALVPC  128 (138)
T ss_dssp             CBHHHHHHHHHHHHTTTSCGGGCCCGGGEEEEEECSSSCEEEECSSSTTCCEETTEEECCBHHHHTCCTTCEEEEEEC
T ss_pred             ccHHHHHHHHHHHHHcCCccccCCCccceeEEEecCCcCceEeeccCCcccccCCceeecchhccCCCCCCEEEEEEC
Confidence            48999999985432  44      345678887654333221112222           2899999999999988743

>3v7o_A Minor nucleoprotein VP30; ssgcid, seattle structural genomics center for infectious disease, SMT, transcription; 2.25A {Reston ebolavirus}

Probab=89.44  E-value=0.068  Score=44.84  Aligned_cols=50  Identities=4%  Similarity=0.096  Sum_probs=0.0

Q ss_pred             CHHHHHHhcccccccCCCCeEEEEEcCCCCeeeecCCCCCcCCCCCCCCCcEEEEec
Q 028484            2 SVESVKDKLWRKCGTSVNSMSLELYDDTNTKVAALTDNSRPLGFYSPLQGYRLHVID   58 (208)
Q Consensus         2 TI~~LK~KLe~itGi~p~~m~L~l~~~~g~~~~~l~dd~~~L~~y~i~~g~~IhV~D   58 (208)
                      ++.-|+.......|+++.++++.+   +|+.+    .++.|..+++++||.+|+|.=
T Consensus        42 pL~KLM~AYcERqGLs~~siRFLF---DGqRI----~dddTPadL~MEDGDtIDV~l   91 (227)
T 3v7o_A           42 PLRRLMEAFAKRQGKEMDSLRFLY---DGIRI----QADQTPEDLDMEDNDIIEAHR   91 (227)
T ss_dssp             ---------------------------------------------------------
T ss_pred             hHHHHHHHHHHHhCCCccceEEEE---CCEec----CCCCCHHHcCCCCCCEEEEEe
Confidence            466788888999999999999998   58774    467889999999999999984

>3kuz_A Plexin-C1; structural genomics, structural genomics consortium, SGC; 2.30A {Homo sapiens}

Probab=88.28  E-value=0.58  Score=35.90  Aligned_cols=57  Identities=25%  Similarity=0.409  Sum_probs=35.9

Q ss_pred             CCHHHHHHhcc-ccc---ccC----CCCeEEEEEcCCCCeee-e------c-CCC---CCcCCCCCCCCCcEEEEe
Q 028484            1 MSVESVKDKLW-RKC---GTS----VNSMSLELYDDTNTKVA-A------L-TDN---SRPLGFYSPLQGYRLHVI   57 (208)
Q Consensus         1 ~TI~~LK~KLe-~it---Gi~----p~~m~L~l~~~~g~~~~-~------l-~dd---~~~L~~y~i~~g~~IhV~   57 (208)
                      .||.|+|+||= .+.   |+|    |.+|.|..+...+..+. .      . .+.   -.||+.|++.||++|-++
T Consensus        49 DTItQVKEKILdavYk~k~~pys~r~~d~dLEwr~g~~~~~L~D~D~tS~~~e~~wkrLNTL~HY~V~Dgatlal~  124 (126)
T 3kuz_A           49 DTIGQAKEKIFQAFLSKNGSPYGLQLNEIGLELQMGTRQKELLDIDSSSVILEDGITKLNTIGHYEISNGSTIKVF  124 (126)
T ss_dssp             CBHHHHHHHHHHHHHHHHSSCCSSCGGGEEEEEEETTEEEEECSSCTTCCBCTTSCBCCCBTGGGTCCTTCEEEEE
T ss_pred             CcHHHHHHHHHHHHhccCCCcCCCCccccceEEecCCCcceeeccCCcceEecCCeeEeccccccCCCCCCEEEEe
Confidence            48999999973 233   665    55788888644322211 0      1 111   237889999999998765

>3goe_A DNA repair protein RAD60; SUMO-like domain, sumoylation, SUMO, genome stability, DNA damage, DNA recombination, nucleus; HET: DNA; 0.97A {Schizosaccharomyces pombe} PDB: 3rcz_A*

Probab=86.38  E-value=1  Score=31.93  Aligned_cols=49  Identities=12%  Similarity=0.164  Sum_probs=38.8

Q ss_pred             CHHHHHHhcccccccCCC-CeEEEEEcCCCCeeeecCCCCCcCCCCCCCCCcEEEEe
Q 028484            2 SVESVKDKLWRKCGTSVN-SMSLELYDDTNTKVAALTDNSRPLGFYSPLQGYRLHVI   57 (208)
Q Consensus         2 TI~~LK~KLe~itGi~p~-~m~L~l~~~~g~~~~~l~dd~~~L~~y~i~~g~~IhV~   57 (208)
                      ||.+|=..--..-|||++ ..+|.+   +|..+    +.+.++.+|.+.||..|-|+
T Consensus        31 ~v~kLi~ayc~~~~I~~~~~IrllF---DGdRL----dp~~tp~DlemeD~D~IDvm   80 (82)
T 3goe_A           31 TVKDLIKRYCTEVKISFHERIRLEF---EGEWL----DPNDQVQSTELEDEDQVSVV   80 (82)
T ss_dssp             BHHHHHHHHHHHHTCCCCTTCEEEE---TTEEC----CTTSBGGGSSCCTTCEEEEE
T ss_pred             CHHHHHHHHHHHcCCCcCceEEEEE---cCccc----CccCChhhhCCcCCceeeee
Confidence            455555555566799999 899988   78763    67889999999999998875

>4e71_A Plexin-B2, MM1; transmembrane, signaling, RBD, structural genomics consortium, SGC, signaling protein; 2.26A {Homo sapiens}

Probab=85.95  E-value=0.65  Score=34.86  Aligned_cols=55  Identities=24%  Similarity=0.366  Sum_probs=32.7

Q ss_pred             CCHHHHHHhcccc--cccC------CCCeEEEEEcCCCCeeeecCC-C-----------CCcCCCCCCCCCcEEEEe
Q 028484            1 MSVESVKDKLWRK--CGTS------VNSMSLELYDDTNTKVAALTD-N-----------SRPLGFYSPLQGYRLHVI   57 (208)
Q Consensus         1 ~TI~~LK~KLe~i--tGi~------p~~m~L~l~~~~g~~~~~l~d-d-----------~~~L~~y~i~~g~~IhV~   57 (208)
                      .||.|+|+||=.-  -|+|      +.+|.|+.+.+....+  |.| |           -.||+.|++.||++|-++
T Consensus        34 DTItQvKeKiLd~vyk~~pyS~rP~~~~~dLEwr~g~~~~i--L~D~D~ts~~~~~wkrLNTL~HY~V~dgatl~l~  108 (111)
T 4e71_A           34 DTISQVKEKIIDQVYRGQPCSCWPRPDSVVLEWRPGSTAQI--LSDLDLTSQREGRWKRVNTLMHYNVRDGATLILS  108 (111)
T ss_dssp             CBHHHHHHHHHHHHTC---------CCSEEEEEC--CCCEE--CCSSCTTSCC---CCCCCBHHHHTCCTTCEEEEE
T ss_pred             CcHHHHHHHHHHHHHcCCccccCCCCCceeeEEecCCCCcc--ccccCccceecCcceEecchhhcCCCCCCEEEEE
Confidence            4899999998321  1444      4577888864322222  211 1           237889999999998764

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	208
d1tova_	98	b.34.10.1 (A:) Cytoskeleton-associated protein F53	4e-35
d2coza1	109	b.34.10.1 (A:8-116) Centrosome-associated protein	1e-31
d1whga_	113	b.34.10.1 (A:) Tubulin-specific chaperone B (SKAP1	2e-30
d2cp6a1	160	b.34.10.1 (A:8-167) Restin {Human (Homo sapiens) [	7e-29
d1whha_	102	b.34.10.1 (A:) CLIP170-related 59kda protein CLIPR	2e-28
d2hqha1	72	b.34.10.1 (A:26-97) Dynactin 1 {Human (Homo sapien	2e-28
d2cowa1	88	b.34.10.1 (A:7-94) Kinesin-like protein kif13b {Hu	9e-27
d2cp0a1	83	b.34.10.1 (A:7-89) CLIP170-related 59kda protein C	1e-26
d1whka_	91	b.34.10.1 (A:) Restin-like protein 2, Rsnl2 {Mouse	2e-26
d2e3ha1	71	b.34.10.1 (A:212-282) CLIP-115 {Human (Homo sapien	2e-26
d2e3ia1	71	b.34.10.1 (A:58-128) Restin {Human (Homo sapiens)	3e-26
d1whja_	102	b.34.10.1 (A:) Restin-like protein 2, Rsnl2 {Mouse	6e-26
d1whla_	95	b.34.10.1 (A:) Cylindromatosis tumour-suppressor C	2e-24
d1ixda_	104	b.34.10.1 (A:) Cylindromatosis tumour-suppressor C	5e-24
d1whma_	92	b.34.10.1 (A:) Cylindromatosis tumour-suppressor C	8e-22
d1v6ea_	95	d.15.1.1 (A:) Ubiquitin-like domain of tubulin fol	4e-16
d1t0ya_	90	d.15.1.1 (A:) Ubiquitin-like domain of tubulin fol	2e-13
d1wjna_	97	d.15.1.1 (A:) Tubulin-folding protein TbcE {Mouse	3e-09

>d1tova_ b.34.10.1 (A:) Cytoskeleton-associated protein F53F4.3 {Caenorhabditis elegans [TaxId: 6239]} Length = 98

class: All beta proteins
fold: SH3-like barrel
superfamily: Cap-Gly domain
family: Cap-Gly domain
domain: Cytoskeleton-associated protein F53F4.3
species: Caenorhabditis elegans [TaxId: 6239]

 Score =  117 bits (295), Expect = 4e-35
 Identities = 49/95 (51%), Positives = 62/95 (65%), Gaps = 4/95 (4%)

Query: 113 SNNYMEDLCSNITVGDRCEVDPGA---KRGVVKYVGQAESIAPGFWVGIQYDEPLGKHNG 169
           S+   E+   NI VG+RCEV  GA   +RG V YVG  +    G WVG++YDEP+GK++G
Sbjct: 4   SDKLNEEAAKNIMVGNRCEVTVGAQMARRGEVAYVGATKF-KEGVWVGVKYDEPVGKNDG 62

Query: 170 IVKGVRYFECPPLHGAMVRPDKVKVGDYPERDPFE 204
            V GVRYF+C P +G  VRP  VKVGD+PE    E
Sbjct: 63  SVAGVRYFDCDPKYGGFVRPVDVKVGDFPELSIDE 97

>d2coza1 b.34.10.1 (A:8-116) Centrosome-associated protein 350 {Human (Homo sapiens) [TaxId: 9606]} Length = 109

class: All beta proteins
fold: SH3-like barrel
superfamily: Cap-Gly domain
family: Cap-Gly domain
domain: Centrosome-associated protein 350
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  109 bits (273), Expect = 1e-31
 Identities = 31/111 (27%), Positives = 55/111 (49%), Gaps = 7/111 (6%)

Query: 97  KEKVLSQNPSAVENKLSNNYMEDLCSNITVGDRCEVDPGAKRGVVKYVGQAESIAPGFWV 156
            E+ ++++PS     L++    D   +  +GDR  +    + G++++ G+    A GFW 
Sbjct: 3   HEQQVTESPS-----LASVPTADELFDFHIGDRVLIG-NVQPGILRFKGETSF-AKGFWA 55

Query: 157 GIQYDEPLGKHNGIVKGVRYFECPPLHGAMVRPDKVKVGDYPERDPFEEDE 207
           G++ D+P G +NG   G+ YFEC   HG    P K+        D  + +E
Sbjct: 56  GVELDKPEGNNNGTYDGIAYFECKEKHGIFAPPQKISHIPENFDDYVDINE 106

>d1whga_ b.34.10.1 (A:) Tubulin-specific chaperone B (SKAP1) {Mouse (Mus musculus) [TaxId: 10090]} Length = 113

class: All beta proteins
fold: SH3-like barrel
superfamily: Cap-Gly domain
family: Cap-Gly domain
domain: Tubulin-specific chaperone B (SKAP1)
species: Mouse (Mus musculus) [TaxId: 10090]

 Score =  106 bits (266), Expect = 2e-30
 Identities = 47/104 (45%), Positives = 63/104 (60%), Gaps = 6/104 (5%)

Query: 98  EKVLSQNPSAVENKLSNNYMEDLCSNITVGDRCEV---DPGAKRGVVKYVGQAESIAPGF 154
           E++ +Q  +    +LS    +   S I+VG RCEV   D   +RG V YVG  +   PG+
Sbjct: 9   EELRAQQEAEAAQRLSEE--KAQASAISVGSRCEVRAPDHSLRRGTVMYVGLTDF-KPGY 65

Query: 155 WVGIQYDEPLGKHNGIVKGVRYFECPPLHGAMVRPDKVKVGDYP 198
           WVG++YDEPLGK++G V G RYFEC   +GA V+P  V VGD  
Sbjct: 66  WVGVRYDEPLGKNDGSVNGKRYFECQAKYGAFVKPSAVTVGDSG 109

>d2cp6a1 b.34.10.1 (A:8-167) Restin {Human (Homo sapiens) [TaxId: 9606]} Length = 160

class: All beta proteins
fold: SH3-like barrel
superfamily: Cap-Gly domain
family: Cap-Gly domain
domain: Restin
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  103 bits (258), Expect = 7e-29
 Identities = 34/101 (33%), Positives = 52/101 (51%), Gaps = 2/101 (1%)

Query: 102 SQNPSAVENKLSNNYMEDLCSNITVGDRCEVDPGAKRGVVKYVGQAESIAPGFWVGIQYD 161
                ++ N      ++     + +GDR  V  G K GVV+++G+ +  A G W G++ D
Sbjct: 10  KTASESISNLSEAGSIKKGERELKIGDRVLV-GGTKAGVVRFLGETDF-AKGEWCGVELD 67

Query: 162 EPLGKHNGIVKGVRYFECPPLHGAMVRPDKVKVGDYPERDP 202
           EPLGK++G V G RYF+C P +G      KV    +P   P
Sbjct: 68  EPLGKNDGAVAGTRYFQCQPKYGLFAPVHKVTKIGFPSTTP 108

>d1whha_ b.34.10.1 (A:) CLIP170-related 59kda protein CLIPR-59 (1500005P14Rik) {Mouse (Mus musculus) [TaxId: 10090]} Length = 102

class: All beta proteins
fold: SH3-like barrel
superfamily: Cap-Gly domain
family: Cap-Gly domain
domain: CLIP170-related 59kda protein CLIPR-59 (1500005P14Rik)
species: Mouse (Mus musculus) [TaxId: 10090]

 Score =  100 bits (251), Expect = 2e-28
 Identities = 33/77 (42%), Positives = 48/77 (62%), Gaps = 3/77 (3%)

Query: 123 NITVGDRCEVDPGAKRGVVKYVGQAESIAPGFWVGIQYDEPLGKHNGIVKGVRYFECPPL 182
              VGD+  V  G K+G+V++ G+ +  APG+W GI+ D+P GKH+G V GVRYF C P 
Sbjct: 25  KAEVGDQVLV-AGQKQGIVRFYGKTDF-APGYWYGIELDQPTGKHDGSVFGVRYFTCAPR 82

Query: 183 HGAMVRPDKV-KVGDYP 198
           HG      ++ ++G  P
Sbjct: 83  HGVFAPASRIQRIGSGP 99

>d2hqha1 b.34.10.1 (A:26-97) Dynactin 1 {Human (Homo sapiens) [TaxId: 9606]} Length = 72

class: All beta proteins
fold: SH3-like barrel
superfamily: Cap-Gly domain
family: Cap-Gly domain
domain: Dynactin 1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 99.8 bits (249), Expect = 2e-28
 Identities = 31/71 (43%), Positives = 40/71 (56%), Gaps = 1/71 (1%)

Query: 124 ITVGDRCEVDPGAKRGVVKYVGQAESIAPGFWVGIQYDEPLGKHNGIVKGVRYFECPPLH 183
           + VG R EV     RG V YVG     A G WVG+  DE  GK++G V+G +YF C   H
Sbjct: 2   LRVGSRVEVIGKGHRGTVAYVGATLF-ATGKWVGVILDEAKGKNDGTVQGRKYFTCDEGH 60

Query: 184 GAMVRPDKVKV 194
           G  VR  +++V
Sbjct: 61  GIFVRQSQIQV 71

>d2cowa1 b.34.10.1 (A:7-94) Kinesin-like protein kif13b {Human (Homo sapiens) [TaxId: 9606]} Length = 88

class: All beta proteins
fold: SH3-like barrel
superfamily: Cap-Gly domain
family: Cap-Gly domain
domain: Kinesin-like protein kif13b
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 96.0 bits (239), Expect = 9e-27
 Identities = 29/81 (35%), Positives = 47/81 (58%), Gaps = 2/81 (2%)

Query: 113 SNNYMEDLCSNITVGDRCEVDPGAKRGVVKYVGQAESIAPGFWVGIQYDEPLGKHNGIVK 172
            +   +++   +  G+   V    K GVV+YVG A+    G WVG++ D P GK++G + 
Sbjct: 7   DSEEADEVPEWLREGEFVTV-GAHKTGVVRYVGPADF-QEGTWVGVELDLPSGKNDGSIG 64

Query: 173 GVRYFECPPLHGAMVRPDKVK 193
           G +YF C P +G +VRP +V+
Sbjct: 65  GKQYFRCNPGYGLLVRPSRVR 85

>d2cp0a1 b.34.10.1 (A:7-89) CLIP170-related 59kda protein CLIPR-59 (1500005P14Rik) {Human (Homo sapiens) [TaxId: 9606]} Length = 83

class: All beta proteins
fold: SH3-like barrel
superfamily: Cap-Gly domain
family: Cap-Gly domain
domain: CLIP170-related 59kda protein CLIPR-59 (1500005P14Rik)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 95.6 bits (238), Expect = 1e-26
 Identities = 31/73 (42%), Positives = 42/73 (57%), Gaps = 2/73 (2%)

Query: 123 NITVGDRCEVDPGAKRGVVKYVGQAESIAPGFWVGIQYDEPLGKHNGIVKGVRYFECPPL 182
            + +GDR  +D G K G +++ G  E  A G WVG++ DEP GK++G V GVRYF CPP 
Sbjct: 10  GLRLGDRVLLD-GQKTGTLRFCGTTEF-ASGQWVGVELDEPEGKNDGSVGGVRYFICPPK 67

Query: 183 HGAMVRPDKVKVG 195
            G      K+   
Sbjct: 68  QGLFASVSKISKA 80

>d1whka_ b.34.10.1 (A:) Restin-like protein 2, Rsnl2 {Mouse (Mus musculus) [TaxId: 10090]} Length = 91

class: All beta proteins
fold: SH3-like barrel
superfamily: Cap-Gly domain
family: Cap-Gly domain
domain: Restin-like protein 2, Rsnl2
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 95.2 bits (237), Expect = 2e-26
 Identities = 23/72 (31%), Positives = 37/72 (51%), Gaps = 1/72 (1%)

Query: 122 SNITVGDRCEVDPGAKRGVVKYVGQAESIAPGFWVGIQYDEPLGKHNGIVKGVRYFECPP 181
             +  G +  +    +   V+YVG  +  A G W+G++     GK++G V   RYF C P
Sbjct: 11  VKLHEGSQVLLTSSNEMATVRYVGPTDF-ASGIWLGLELRSAKGKNDGAVGDKRYFTCKP 69

Query: 182 LHGAMVRPDKVK 193
            +G +VRP +V 
Sbjct: 70  NYGVLVRPSRVT 81

>d2e3ha1 b.34.10.1 (A:212-282) CLIP-115 {Human (Homo sapiens) [TaxId: 9606]} Length = 71

class: All beta proteins
fold: SH3-like barrel
superfamily: Cap-Gly domain
family: Cap-Gly domain
domain: CLIP-115
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 94.8 bits (236), Expect = 2e-26
 Identities = 33/73 (45%), Positives = 47/73 (64%), Gaps = 3/73 (4%)

Query: 124 ITVGDRCEVDPGAKRGVVKYVGQAESIAPGFWVGIQYDEPLGKHNGIVKGVRYFECPPLH 183
           + +GDR  V  G K GVV+++G+ +  A G W G++ DEPLGK++G V G RYF+C P +
Sbjct: 1   LKIGDRVLV-GGTKAGVVRFLGETDF-AKGEWCGVELDEPLGKNDGAVAGTRYFQCQPKY 58

Query: 184 GAMVRPDKV-KVG 195
           G      KV K+G
Sbjct: 59  GLFAPVHKVTKIG 71

>d2e3ia1 b.34.10.1 (A:58-128) Restin {Human (Homo sapiens) [TaxId: 9606]} Length = 71

class: All beta proteins
fold: SH3-like barrel
superfamily: Cap-Gly domain
family: Cap-Gly domain
domain: Restin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 94.0 bits (234), Expect = 3e-26
 Identities = 33/68 (48%), Positives = 46/68 (67%), Gaps = 2/68 (2%)

Query: 126 VGDRCEVDPGAKRGVVKYVGQAESIAPGFWVGIQYDEPLGKHNGIVKGVRYFECPPLHGA 185
           VG+R  V+ G K G ++++G+ +  APG W GI  DEP+GK++G V GVRYF+C PL G 
Sbjct: 3   VGERVWVN-GNKPGFIQFLGETQF-APGQWAGIVLDEPIGKNDGSVAGVRYFQCEPLKGI 60

Query: 186 MVRPDKVK 193
             RP K+ 
Sbjct: 61  FTRPSKLT 68

>d1whja_ b.34.10.1 (A:) Restin-like protein 2, Rsnl2 {Mouse (Mus musculus) [TaxId: 10090]} Length = 102

class: All beta proteins
fold: SH3-like barrel
superfamily: Cap-Gly domain
family: Cap-Gly domain
domain: Restin-like protein 2, Rsnl2
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 94.1 bits (234), Expect = 6e-26
 Identities = 30/79 (37%), Positives = 43/79 (54%), Gaps = 3/79 (3%)

Query: 123 NITVGDRCEVDPGAKRGVVKYVGQAESIAPGFWVGIQYDEPLGKHNGIVKGVRYFECPPL 182
            + +GDR  +  G K G +++ G  E  A G W GI+ DEP GK+NG V  V+YF+C P 
Sbjct: 24  GLKLGDRVVI-AGQKVGTLRFCGTTEF-ASGQWAGIELDEPEGKNNGSVGRVQYFKCAPK 81

Query: 183 HGAMVRPDKV-KVGDYPER 200
           +G      K+ K+ D    
Sbjct: 82  YGIFAPLSKISKLKDSGPS 100

>d1whla_ b.34.10.1 (A:) Cylindromatosis tumour-suppressor Cyld {Human (Homo sapiens) [TaxId: 9606]} Length = 95

class: All beta proteins
fold: SH3-like barrel
superfamily: Cap-Gly domain
family: Cap-Gly domain
domain: Cylindromatosis tumour-suppressor Cyld
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 90.3 bits (224), Expect = 2e-24
 Identities = 23/86 (26%), Positives = 38/86 (44%), Gaps = 9/86 (10%)

Query: 122 SNITVGDRCEV----DPGAKRGVVKYVG--QAESIAPGFWVGIQYDE---PLGKHNGIVK 172
           S I VG   +V          GVV++ G   AE    G + G++  E     G  +G+ +
Sbjct: 6   SGIDVGCPVKVQLRSGEEKFPGVVRFRGPLLAERTVSGIFFGVELLEEGRGQGFTDGVYQ 65

Query: 173 GVRYFECPPLHGAMVRPDKVKVGDYP 198
           G + F+C    G  V  DK+++ +  
Sbjct: 66  GKQLFQCDEDCGVFVALDKLELIESG 91

>d1ixda_ b.34.10.1 (A:) Cylindromatosis tumour-suppressor Cyld {Human (Homo sapiens) [TaxId: 9606]} Length = 104

class: All beta proteins
fold: SH3-like barrel
superfamily: Cap-Gly domain
family: Cap-Gly domain
domain: Cylindromatosis tumour-suppressor Cyld
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 89.1 bits (221), Expect = 5e-24
 Identities = 20/84 (23%), Positives = 32/84 (38%), Gaps = 4/84 (4%)

Query: 122 SNITVGDRCEVDPGAKR-GVVKYVGQAESIAPGFWVGIQY-DEPLGKHNGIVKGVRYFEC 179
             + VG   EV       GV++++GQ          G++  DE  G  +G  +G RYF C
Sbjct: 16  HGLEVGSLAEVKENPPFYGVIRWIGQPPG-LNEVLAGLELEDECAGCTDGTFRGTRYFTC 74

Query: 180 PPLHGAMVRPDKVKVG-DYPERDP 202
                  V+    +    +    P
Sbjct: 75  ALKKALFVKLKSCRPDSRFASLQP 98

>d1whma_ b.34.10.1 (A:) Cylindromatosis tumour-suppressor Cyld {Human (Homo sapiens) [TaxId: 9606]} Length = 92

class: All beta proteins
fold: SH3-like barrel
superfamily: Cap-Gly domain
family: Cap-Gly domain
domain: Cylindromatosis tumour-suppressor Cyld
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 83.3 bits (206), Expect = 8e-22
 Identities = 12/75 (16%), Positives = 28/75 (37%), Gaps = 4/75 (5%)

Query: 122 SNITVGDRCEVDP--GAKRGVVKYVGQAESI-APGFWVGIQYDEPLGKHNGIVKGVRYFE 178
             + +  R  +      + G V +        + G++VG+  D P+G  +G   GV+   
Sbjct: 8   PPLEINSRVSLKVGETIESGTVIFCDVLPGKESLGYFVGVDMDNPIGNWDGRFDGVQLCS 67

Query: 179 C-PPLHGAMVRPDKV 192
                   ++  + +
Sbjct: 68  FACVESTILLHINDI 82

>d1v6ea_ d.15.1.1 (A:) Ubiquitin-like domain of tubulin folding cofactor B {Mouse (Mus musculus) [TaxId: 10090]} Length = 95

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Ubiquitin-like domain of tubulin folding cofactor B
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 68.8 bits (168), Expect = 4e-16
 Identities = 22/67 (32%), Positives = 31/67 (46%)

Query: 1  MSVESVKDKLWRKCGTSVNSMSLELYDDTNTKVAALTDNSRPLGFYSPLQGYRLHVIDLD 60
          +++   K KL    G+  + M LELY   +   + L      LG Y    G R+HVID  
Sbjct: 29 LTIAEFKCKLELVVGSPASCMELELYGADDKFYSKLDQEDALLGSYPVDDGCRIHVIDHS 88

Query: 61 PSSVTSG 67
           S  +SG
Sbjct: 89 GSGPSSG 95

>d1t0ya_ d.15.1.1 (A:) Ubiquitin-like domain of tubulin folding cofactor B {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 90

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Ubiquitin-like domain of tubulin folding cofactor B
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 61.4 bits (149), Expect = 2e-13
 Identities = 21/63 (33%), Positives = 35/63 (55%)

Query: 1  MSVESVKDKLWRKCGTSVNSMSLELYDDTNTKVAALTDNSRPLGFYSPLQGYRLHVIDLD 60
          MS+  +K KL    GT+V+SM ++L+D  +     LTD ++ L       GYR+H +D+ 
Sbjct: 26 MSLNDLKKKLELVVGTTVDSMRIQLFDGDDQLKGELTDGAKSLKDLGVRDGYRIHAVDVT 85

Query: 61 PSS 63
            +
Sbjct: 86 GGN 88

>d1wjna_ d.15.1.1 (A:) Tubulin-folding protein TbcE {Mouse (Mus musculus) [TaxId: 10090]} Length = 97

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Tubulin-folding protein TbcE
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 50.3 bits (120), Expect = 3e-09
 Identities = 20/64 (31%), Positives = 26/64 (40%), Gaps = 1/64 (1%)

Query: 1  MSVESVKDKLWRKCGTSVNSMSLELYDDTNTKVAALTDN-SRPLGFYSPLQGYRLHVIDL 59
          M+V+ VK  L R     V+ + L              +N  +PL FYS   G  L V   
Sbjct: 33 MTVQKVKGLLSRLLKVPVSELLLSYESSKMPGREIELENDLQPLQFYSVENGDCLLVRWS 92

Query: 60 DPSS 63
           PSS
Sbjct: 93 GPSS 96

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	208
d1tova_	98	Cytoskeleton-associated protein F53F4.3 {Caenorhab	100.0
d1whga_	113	Tubulin-specific chaperone B (SKAP1) {Mouse (Mus m	99.97
d2coza1	109	Centrosome-associated protein 350 {Human (Homo sap	99.97
d2hqha1	72	Dynactin 1 {Human (Homo sapiens) [TaxId: 9606]}	99.96
d2cp0a1	83	CLIP170-related 59kda protein CLIPR-59 (1500005P14	99.96
d2e3ia1	71	Restin {Human (Homo sapiens) [TaxId: 9606]}	99.96
d2e3ha1	71	CLIP-115 {Human (Homo sapiens) [TaxId: 9606]}	99.96
d2cowa1	88	Kinesin-like protein kif13b {Human (Homo sapiens)	99.96
d1whha_	102	CLIP170-related 59kda protein CLIPR-59 (1500005P14	99.96
d1whka_	91	Restin-like protein 2, Rsnl2 {Mouse (Mus musculus)	99.95
d1whja_	102	Restin-like protein 2, Rsnl2 {Mouse (Mus musculus)	99.95
d1ixda_	104	Cylindromatosis tumour-suppressor Cyld {Human (Hom	99.95
d2cp6a1	160	Restin {Human (Homo sapiens) [TaxId: 9606]}	99.95
d1whla_	95	Cylindromatosis tumour-suppressor Cyld {Human (Hom	99.94
d1whma_	92	Cylindromatosis tumour-suppressor Cyld {Human (Hom	99.92
d1v6ea_	95	Ubiquitin-like domain of tubulin folding cofactor	99.72
d1t0ya_	90	Ubiquitin-like domain of tubulin folding cofactor	99.68
d1wjna_	97	Tubulin-folding protein TbcE {Mouse (Mus musculus)	99.48
d2bwfa1	73	DSK2 {Baker's yeast (Saccharomyces cerevisiae) [Ta	98.94
d1wxva1	81	Bag-family molecular chaperone regulator-1 {Human	98.93
d2zeqa1	78	Ubiquitin-like domain of parkin {Mouse (Mus muscul	98.92
d2faza1	76	Ubiquitin-like PHD and RING finger domain-containi	98.91
d1z2ma1	76	Interferon-induced 15 kDa protein {Human (Homo sap	98.9
d1z2ma2	76	Interferon-induced 15 kDa protein {Human (Homo sap	98.89
d1bt0a_	73	Rub1 {Mouse-ear cress (Arabidopsis thaliana) [TaxI	98.85
d1wy8a1	76	Ubiquitin-like PHD and RING finger domain-containi	98.84
d1ogwa_	76	Ubiquitin {Human (Homo sapiens) [TaxId: 9606]}	98.83
d1zkha1	86	Splicing factor 3 subunit 1, C-terminal domain {Hu	98.83
d1v5ta_	90	8430435i17rik protein {Mouse (Mus musculus) [TaxId	98.81
d1wh3a_	87	2'-5'-oligoadenylate synthetase-like protein, OASL	98.81
d1j8ca_	103	Ubiquitin-like N-terminal domain of PLIC-2 {Human	98.8
d1m94a_	73	Ubiquitin-like modifier protein hub1 {Baker's yeas	98.79
d1ttna1	80	Dendritic cell-derived ubiquitin-like protein {Hum	98.79
d1we6a_	111	Splicing factor 3 subunit 1, C-terminal domain {Th	98.76
d1v5oa_	102	1700011n24rik protein {Mouse (Mus musculus) [TaxId	98.73
d1wx8a1	83	4931431F19Rik {Mouse (Mus musculus) [TaxId: 10090]	98.73
d1yqba1	84	Ubiquilin-3 {Human (Homo sapiens) [TaxId: 9606]}	98.71
d1wgga_	96	Ubiquitin carboxyl-terminal hydrolase 14 {Mouse (M	98.68
d1wx9a1	73	Large proline-rich protein BAT3 {Human (Homo sapie	98.64
d1oqya4	77	Ubiquitin-like domain of Rad23 homolog A (Hhr23a)	98.61
d1uh6a_	100	Ubiquitin-like protein 5, ubl5 {Mouse (Mus musculu	98.6
d1v86a_	95	hypothetical D7wsu128e protein {Mouse (Mus musculu	98.59
d1uela_	95	Ubiquitin-like domain of Rad23 homolog B (Hhr23B)	98.57
d1wjua_	100	NEDD8 ultimate buster-1, NUB1 {Human (Homo sapiens	98.52
d1wiaa_	95	Ubiquitin-like protein bab25500 (2010008E23Rik) {M	98.47
d1wgha_	116	Ubiquitin-like protein 3, Ubl3 {Mouse (Mus musculu	98.39
d1v2ya_	105	Ubiquitin-like protein 3300001g02rik {Mouse (Mus m	98.36
d1se9a_	101	Hypothetical protein At3g01050 {Thale cress (Arabi	98.33
d2c9wb1	103	Elongin B {Human (Homo sapiens) [TaxId: 9606]}	98.13
d1wgda_	93	Homocysteine-responsive endoplasmic reticulum-resi	98.13
d1x1ma1	94	Ubiquitin-like protein 7 {Mouse (Mus musculus) [Ta	98.12
d1euvb_	79	SUMO-1 (smt3 homologue) {Baker's yeast (Saccharomy	97.91
d1wf9a1	94	NPL4-like protein 1 {Thale cress (Arabidopsis thal	97.46
d2uyzb1	77	SUMO-1 (smt3 homologue) {Human (Homo sapiens) [Tax	97.08
d1wm3a_	72	SUMO-2 {Human (Homo sapiens) [TaxId: 9606]}	92.07

>d1tova_ b.34.10.1 (A:) Cytoskeleton-associated protein F53F4.3 {Caenorhabditis elegans [TaxId: 6239]}

class: All beta proteins
fold: SH3-like barrel
superfamily: Cap-Gly domain
family: Cap-Gly domain
domain: Cytoskeleton-associated protein F53F4.3
species: Caenorhabditis elegans [TaxId: 6239]

Probab=100.00  E-value=4.6e-34  Score=212.44  Aligned_cols=88  Identities=57%  Similarity=1.059  Sum_probs=79.6

Q ss_pred             hhhhcCCCCcCCEEEEcCC---CceeEEEEecccCCCCCCcEEEEEEeCCCCCCCcEECCEEeeecCCCceeeecCCCCc
Q 028484          117 MEDLCSNITVGDRCEVDPG---AKRGVVKYVGQAESIAPGFWVGIQYDEPLGKHNGIVKGVRYFECPPLHGAMVRPDKVK  193 (208)
Q Consensus       117 ~~~~~~~~~vG~rv~v~~~---~~~G~vryvG~~~~~~~g~wvGVelde~~GkndGs~~G~rYF~c~~~~G~Fv~~~~v~  193 (208)
                      .++++.+|+||+||+|..+   .++|+|||+|++++ .+|+|+|||||+|.|+|||+++|+|||+|+|+||+|||+++|+
T Consensus         8 ~~~~~~~l~VG~RV~V~~~~~~~~~G~vryiG~~~~-~~g~~vGVelD~p~G~~dG~~~g~~YF~c~~~~G~Fv~~~~v~   86 (98)
T d1tova_           8 NEEAAKNIMVGNRCEVTVGAQMARRGEVAYVGATKF-KEGVWVGVKYDEPVGKNDGSVAGVRYFDCDPKYGGFVRPVDVK   86 (98)
T ss_dssp             HHHHHTTCCTTCEEEECCTTSCCEEEEEEEEECCSS-SSSCEEEEEESSSCSSBSSEETTEECSCCCTTSEEEECGGGEE
T ss_pred             hhhhccCCccCCEEEEecCCCCceeEEEEEeeecCC-CCceEEEEEeCCCCCCcCCEECCEEEEEcCCCCEEEeChhheE
Confidence            3456678999999999632   46899999999999 8999999999999999999999999999999999999999999


Q ss_pred             cCCCCCCCCCCCCCC
Q 028484          194 VGDYPERDPFEEDEI  208 (208)
Q Consensus       194 ~g~fp~~d~~~~dE~  208 (208)
                      +||||++|   +|||
T Consensus        87 ~gd~P~~d---~de~   98 (98)
T d1tova_          87 VGDFPELS---IDEI   98 (98)
T ss_dssp             ESCCCCCC---CSCC
T ss_pred             ECCCCCCC---cccC
Confidence            99999987   4554

>d1whga_ b.34.10.1 (A:) Tubulin-specific chaperone B (SKAP1) {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: SH3-like barrel
superfamily: Cap-Gly domain
family: Cap-Gly domain
domain: Tubulin-specific chaperone B (SKAP1)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.97  E-value=4e-31  Score=201.10  Aligned_cols=80  Identities=53%  Similarity=1.004  Sum_probs=73.8

Q ss_pred             hhcCCCCcCCEEEEcCC---CceeEEEEecccCCCCCCcEEEEEEeCCCCCCCcEECCEEeeecCCCceeeecCCCCccC
Q 028484          119 DLCSNITVGDRCEVDPG---AKRGVVKYVGQAESIAPGFWVGIQYDEPLGKHNGIVKGVRYFECPPLHGAMVRPDKVKVG  195 (208)
Q Consensus       119 ~~~~~~~vG~rv~v~~~---~~~G~vryvG~~~~~~~g~wvGVelde~~GkndGs~~G~rYF~c~~~~G~Fv~~~~v~~g  195 (208)
                      +....+.||+||+|...   .++|+|||+|++++ .+|+|+|||||+|.|||||+|+|+|||+|+|+||+|||+++|++|
T Consensus        28 ~~~~~~~VG~rv~V~~~~~~~r~G~vryvG~~~~-~~g~~~GVelD~p~Gk~dG~~~G~rYF~c~~~~G~fv~~~~v~~~  106 (113)
T d1whga_          28 AQASAISVGSRCEVRAPDHSLRRGTVMYVGLTDF-KPGYWVGVRYDEPLGKNDGSVNGKRYFECQAKYGAFVKPSAVTVG  106 (113)
T ss_dssp             HHHTTSCSSCEEEECCSSSSCEEEEEEEEEECSS-SSSEEEEEEESSSCCSBBSEETTEECSCCCTTTEEEECGGGEEEE
T ss_pred             hhcccCcCCCEEEEEcCCCCceEEEEEEeeecCC-CCCeEEEEEecCCCCCCCCEECCEEEEecCCCcEEEeCHHHeEEC
Confidence            44567999999999622   46899999999999 899999999999999999999999999999999999999999999


Q ss_pred             CCCC
Q 028484          196 DYPE  199 (208)
Q Consensus       196 ~fp~  199 (208)
                      ||||
T Consensus       107 ~~~p  110 (113)
T d1whga_         107 DSGP  110 (113)
T ss_dssp             ECCS
T ss_pred             CCCC
Confidence            9987

>d2coza1 b.34.10.1 (A:8-116) Centrosome-associated protein 350 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: SH3-like barrel
superfamily: Cap-Gly domain
family: Cap-Gly domain
domain: Centrosome-associated protein 350
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.97  E-value=7.2e-31  Score=198.51  Aligned_cols=81  Identities=31%  Similarity=0.658  Sum_probs=73.9

Q ss_pred             hcCCCCcCCEEEEcCCCceeEEEEecccCCCCCCcEEEEEEeCCCCCCCcEECCEEeeecCCCceeeecCCCCccCCCCC
Q 028484          120 LCSNITVGDRCEVDPGAKRGVVKYVGQAESIAPGFWVGIQYDEPLGKHNGIVKGVRYFECPPLHGAMVRPDKVKVGDYPE  199 (208)
Q Consensus       120 ~~~~~~vG~rv~v~~~~~~G~vryvG~~~~~~~g~wvGVelde~~GkndGs~~G~rYF~c~~~~G~Fv~~~~v~~g~fp~  199 (208)
                      ....|.||+||.|. +.++|+|||||++++ .+|+|+|||||+|.|||||+++|+|||+|+|+||+|||+++|+..+.+.
T Consensus        21 ~~~~~~vG~rV~V~-~~~~G~vryiG~~~~-~~g~~vGVElDep~GkndGtv~G~~YF~C~~~~GiFv~~~~v~~~~~~~   98 (109)
T d2coza1          21 ELFDFHIGDRVLIG-NVQPGILRFKGETSF-AKGFWAGVELDKPEGNNNGTYDGIAYFECKEKHGIFAPPQKISHIPENF   98 (109)
T ss_dssp             SCSSCCTTEEEEET-TTEEEEEEEEEECSS-SSSEEEEEEESSTTSSBCSEETTEECCCCCSSCEEEECGGGEECCCTTC
T ss_pred             ccccCccCCEEEEC-CCeeEEEEEEeecCC-CCCcEEEEEecCCCCCCCCEECCEEEEecCCCcEEEeCHHHcEecCCCc
Confidence            35679999999996 578899999999999 8999999999999999999999999999999999999999999886655


Q ss_pred             CCC
Q 028484          200 RDP  202 (208)
Q Consensus       200 ~d~  202 (208)
                      .|.
T Consensus        99 ~d~  101 (109)
T d2coza1          99 DDY  101 (109)
T ss_dssp             CSC
T ss_pred             ccc
Confidence            443

>d2hqha1 b.34.10.1 (A:26-97) Dynactin 1 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: SH3-like barrel
superfamily: Cap-Gly domain
family: Cap-Gly domain
domain: Dynactin 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.96  E-value=8.8e-31  Score=184.59  Aligned_cols=71  Identities=44%  Similarity=0.781  Sum_probs=66.8

Q ss_pred             CCCcCCEEEEcCCCceeEEEEecccCCCCCCcEEEEEEeCCCCCCCcEECCEEeeecCCCceeeecCCCCcc
Q 028484          123 NITVGDRCEVDPGAKRGVVKYVGQAESIAPGFWVGIQYDEPLGKHNGIVKGVRYFECPPLHGAMVRPDKVKV  194 (208)
Q Consensus       123 ~~~vG~rv~v~~~~~~G~vryvG~~~~~~~g~wvGVelde~~GkndGs~~G~rYF~c~~~~G~Fv~~~~v~~  194 (208)
                      .|+||+||+|....++|+|||+|++++ .+|.|+|||||+|.||||||++|+|||+|+|+||+||++++|++
T Consensus         1 pl~vG~rV~v~~~~~~G~vryvG~~~~-~~g~~vGVeldep~GkndGt~~G~~YF~C~~~~G~Fv~~~~v~v   71 (72)
T d2hqha1           1 PLRVGSRVEVIGKGHRGTVAYVGATLF-ATGKWVGVILDEAKGKNDGTVQGRKYFTCDEGHGIFVRQSQIQV   71 (72)
T ss_dssp             CCSTTCEEEETTTCCEEEEEEEECCSS-SSSCEEEEEESSSCSSBSSEETTEESSCCCTTTEEEECGGGEEE
T ss_pred             CcccCCEEEEcCCCEEEEEEEecccCC-CCCcEEEEEEccCCCCCCCEECCEEEEecCCCcEEEechHHEEE
Confidence            378999999974478999999999999 89999999999999999999999999999999999999999975

>d2cp0a1 b.34.10.1 (A:7-89) CLIP170-related 59kda protein CLIPR-59 (1500005P14Rik) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: SH3-like barrel
superfamily: Cap-Gly domain
family: Cap-Gly domain
domain: CLIP170-related 59kda protein CLIPR-59 (1500005P14Rik)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.96  E-value=2.7e-30  Score=186.75  Aligned_cols=74  Identities=42%  Similarity=0.842  Sum_probs=69.3

Q ss_pred             hcCCCCcCCEEEEcCCCceeEEEEecccCCCCCCcEEEEEEeCCCCCCCcEECCEEeeecCCCceeeecCCCCccC
Q 028484          120 LCSNITVGDRCEVDPGAKRGVVKYVGQAESIAPGFWVGIQYDEPLGKHNGIVKGVRYFECPPLHGAMVRPDKVKVG  195 (208)
Q Consensus       120 ~~~~~~vG~rv~v~~~~~~G~vryvG~~~~~~~g~wvGVelde~~GkndGs~~G~rYF~c~~~~G~Fv~~~~v~~g  195 (208)
                      ++..|+||+||+|. +.++|+|||+|++++ .+|.|+|||||+|.|||||+++|+|||+|+|+||+|||+++|...
T Consensus         7 s~~~l~vG~rV~v~-~~~~G~vryvG~~~~-~~g~~vGVElD~p~GkndGt~~G~rYF~C~~~~G~Fv~~~~v~~~   80 (83)
T d2cp0a1           7 SALGLRLGDRVLLD-GQKTGTLRFCGTTEF-ASGQWVGVELDEPEGKNDGSVGGVRYFICPPKQGLFASVSKISKA   80 (83)
T ss_dssp             HHHTCCTTCEEEET-TTEEEEEEEEECCSS-SCSCEEEEEESSSCCSBCSEETTEECCCCSSSCEEEECGGGEEEC
T ss_pred             EecCCccCCEEEEC-CCceEEEEEeeecCC-CCCcEEEEEECCCCCCCCCEECCEEEeecCCCceEEcCHHHcccc
Confidence            45689999999996 578999999999999 899999999999999999999999999999999999999999764

>d2e3ia1 b.34.10.1 (A:58-128) Restin {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: SH3-like barrel
superfamily: Cap-Gly domain
family: Cap-Gly domain
domain: Restin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.96  E-value=3.2e-30  Score=181.18  Aligned_cols=69  Identities=48%  Similarity=1.008  Sum_probs=65.2

Q ss_pred             CCcCCEEEEcCCCceeEEEEecccCCCCCCcEEEEEEeCCCCCCCcEECCEEeeecCCCceeeecCCCCcc
Q 028484          124 ITVGDRCEVDPGAKRGVVKYVGQAESIAPGFWVGIQYDEPLGKHNGIVKGVRYFECPPLHGAMVRPDKVKV  194 (208)
Q Consensus       124 ~~vG~rv~v~~~~~~G~vryvG~~~~~~~g~wvGVelde~~GkndGs~~G~rYF~c~~~~G~Fv~~~~v~~  194 (208)
                      ++||+||.|. +.++|+|||+|++++ .+|.|+|||||+|.||||||++|+|||+|+|+||+||++++|..
T Consensus         1 f~vG~rV~v~-~~~~G~vryvG~~~~-~~g~~vGVEld~p~Gk~dGt~~G~~YF~c~~~~G~Fv~~~~v~k   69 (71)
T d2e3ia1           1 FRVGERVWVN-GNKPGFIQFLGETQF-APGQWAGIVLDEPIGKNDGSVAGVRYFQCEPLKGIFTRPSKLTR   69 (71)
T ss_dssp             CCTTCEEEET-TTEEEEEEEEEECSS-SSSEEEEEEESSSCSSBSSEETTEESSCCSTTCEEEECGGGEES
T ss_pred             CccCCEEEEC-CCcEEEEEEEeecCC-CCCcEEEEEECCCCCCCCCEECCEEEEecCCCcEEEeCHHHEEe
Confidence            5799999997 578999999999999 89999999999999999999999999999999999999999864

>d2e3ha1 b.34.10.1 (A:212-282) CLIP-115 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: SH3-like barrel
superfamily: Cap-Gly domain
family: Cap-Gly domain
domain: CLIP-115
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.96  E-value=4.2e-30  Score=180.73  Aligned_cols=68  Identities=46%  Similarity=0.932  Sum_probs=64.9

Q ss_pred             CCcCCEEEEcCCCceeEEEEecccCCCCCCcEEEEEEeCCCCCCCcEECCEEeeecCCCceeeecCCCCc
Q 028484          124 ITVGDRCEVDPGAKRGVVKYVGQAESIAPGFWVGIQYDEPLGKHNGIVKGVRYFECPPLHGAMVRPDKVK  193 (208)
Q Consensus       124 ~~vG~rv~v~~~~~~G~vryvG~~~~~~~g~wvGVelde~~GkndGs~~G~rYF~c~~~~G~Fv~~~~v~  193 (208)
                      |+||+||+|. +.++|+|||+|++++ .+|.|+|||||+|.|+|||+++|+|||+|+|+||+|||+++|.
T Consensus         1 l~vG~rV~v~-~~~~G~vryvG~~~~-~~g~~~GVeld~~~Gk~dG~~~G~~YF~c~~~~G~Fv~~~kv~   68 (71)
T d2e3ha1           1 LKIGDRVLVG-GTKAGVVRFLGETDF-AKGEWCGVELDEPLGKNDGAVAGTRYFQCQPKYGLFAPVHKVT   68 (71)
T ss_dssp             CCTTCEEEET-TTEEEEEEEEEECSS-SSSEEEEEEESSSCCSBSSEETTEESCCCCTTCEEEEEGGGEE
T ss_pred             CccCCEEEEC-CCceEEEEEecccCC-CCCCEEEEEECCCCCCCCCEECCEEEEecCCCCEEEeCHHHcE
Confidence            6899999996 678999999999999 8999999999999999999999999999999999999999984

>d2cowa1 b.34.10.1 (A:7-94) Kinesin-like protein kif13b {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: SH3-like barrel
superfamily: Cap-Gly domain
family: Cap-Gly domain
domain: Kinesin-like protein kif13b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.96  E-value=3.9e-30  Score=187.57  Aligned_cols=75  Identities=39%  Similarity=0.764  Sum_probs=69.7

Q ss_pred             hhcCCCCcCCEEEEcCCCceeEEEEecccCCCCCCcEEEEEEeCCCCCCCcEECCEEeeecCCCceeeecCCCCccC
Q 028484          119 DLCSNITVGDRCEVDPGAKRGVVKYVGQAESIAPGFWVGIQYDEPLGKHNGIVKGVRYFECPPLHGAMVRPDKVKVG  195 (208)
Q Consensus       119 ~~~~~~~vG~rv~v~~~~~~G~vryvG~~~~~~~g~wvGVelde~~GkndGs~~G~rYF~c~~~~G~Fv~~~~v~~g  195 (208)
                      +.+..+.+|+||.|. +.++|+|||+|++++ .+|+|+|||||+|.|+|||+++|+|||+|+|+||+|||+++|+..
T Consensus        13 ~~~~~l~vG~rV~V~-~~~~G~vryiG~~~~-~~g~~vGVeld~p~GkndG~~~G~~YF~c~~~~G~Fv~~~~v~~~   87 (88)
T d2cowa1          13 EVPEWLREGEFVTVG-AHKTGVVRYVGPADF-QEGTWVGVELDLPSGKNDGSIGGKQYFRCNPGYGLLVRPSRVRRA   87 (88)
T ss_dssp             CCCSSCCTTCEEECS-SSCEEEEEEEECCSS-SSSCEEEEECSSSCCSCSSEETTEECCCSCTTCCEEECGGGCEEC
T ss_pred             cccccCcccCEEEEC-CCcEEEEEEeeecCC-CCCcEEEEEeCCCCCCCCCEECCEEEEecCCCcEEEecHHHcEEC
Confidence            445679999999996 578999999999999 899999999999999999999999999999999999999999754

>d1whha_ b.34.10.1 (A:) CLIP170-related 59kda protein CLIPR-59 (1500005P14Rik) {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: SH3-like barrel
superfamily: Cap-Gly domain
family: Cap-Gly domain
domain: CLIP170-related 59kda protein CLIPR-59 (1500005P14Rik)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.96  E-value=7.7e-30  Score=190.83  Aligned_cols=77  Identities=43%  Similarity=0.951  Sum_probs=72.5

Q ss_pred             cCCCCcCCEEEEcCCCceeEEEEecccCCCCCCcEEEEEEeCCCCCCCcEECCEEeeecCCCceeeecCCCCc-cCCCCC
Q 028484          121 CSNITVGDRCEVDPGAKRGVVKYVGQAESIAPGFWVGIQYDEPLGKHNGIVKGVRYFECPPLHGAMVRPDKVK-VGDYPE  199 (208)
Q Consensus       121 ~~~~~vG~rv~v~~~~~~G~vryvG~~~~~~~g~wvGVelde~~GkndGs~~G~rYF~c~~~~G~Fv~~~~v~-~g~fp~  199 (208)
                      ...++||+||.|. +.++|+|||+|++++ ..|+|+|||||+|.|+|||+|+|+|||+|+|+||+||++++|+ ++|||+
T Consensus        23 ~~~~~vGdrV~v~-~~~~G~vryvG~~~~-~~g~~~GVEld~p~GkndGt~~G~rYF~C~p~~GiFv~~~~v~~~~d~p~  100 (102)
T d1whha_          23 GAKAEVGDQVLVA-GQKQGIVRFYGKTDF-APGYWYGIELDQPTGKHDGSVFGVRYFTCAPRHGVFAPASRIQRIGSGPS  100 (102)
T ss_dssp             CCSSCTTSEEEET-TTEEEEEEEEEECSS-SSSEEEEEECSSSCCSSSSEETTEECSCCCTTTEEEECGGGEEECCSCTT
T ss_pred             cCcCcccCEEEEC-CCceEEEEEecccCC-CCCeEEEEEeCCCCCCCCCEECCEEEEecCCCcEEEeCHHHceECCCCCC
Confidence            4679999999996 678999999999999 8999999999999999999999999999999999999999998 569986

>d1whka_ b.34.10.1 (A:) Restin-like protein 2, Rsnl2 {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: SH3-like barrel
superfamily: Cap-Gly domain
family: Cap-Gly domain
domain: Restin-like protein 2, Rsnl2
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.95  E-value=2.1e-29  Score=184.60  Aligned_cols=75  Identities=31%  Similarity=0.647  Sum_probs=70.2

Q ss_pred             hcCCCCcCCEEEEcCCCceeEEEEecccCCCCCCcEEEEEEeCCCCCCCcEECCEEeeecCCCceeeecCCCCccC
Q 028484          120 LCSNITVGDRCEVDPGAKRGVVKYVGQAESIAPGFWVGIQYDEPLGKHNGIVKGVRYFECPPLHGAMVRPDKVKVG  195 (208)
Q Consensus       120 ~~~~~~vG~rv~v~~~~~~G~vryvG~~~~~~~g~wvGVelde~~GkndGs~~G~rYF~c~~~~G~Fv~~~~v~~g  195 (208)
                      ....|++|+||+|..+.++|+|||+|++++ .+|.|+|||||+|.|||||+++|+|||+|+|+||+|||+++|..-
T Consensus         9 ~~~~l~vG~rV~v~~~~~~G~vryvG~~~~-~~g~~vGVElD~p~GkndGtv~G~~YF~C~~~~G~Fv~~~~v~~~   83 (91)
T d1whka_           9 GTVKLHEGSQVLLTSSNEMATVRYVGPTDF-ASGIWLGLELRSAKGKNDGAVGDKRYFTCKPNYGVLVRPSRVTYR   83 (91)
T ss_dssp             CCCCCCSSCEEEESSSCCEEEECCCEECSS-SSSEEEEEECSSSCSSCCSEETTEECCCCSTTCCCEECGGGEECC
T ss_pred             CCcccccCCEEEEcCCCeEEEEEEeeecCC-CCCCEEEEEeCCCCCCCCCEECCEEEeecCCCceEEeCHHHeEEc
Confidence            356799999999975678999999999999 899999999999999999999999999999999999999999864

>d1whja_ b.34.10.1 (A:) Restin-like protein 2, Rsnl2 {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: SH3-like barrel
superfamily: Cap-Gly domain
family: Cap-Gly domain
domain: Restin-like protein 2, Rsnl2
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.95  E-value=1.3e-28  Score=184.18  Aligned_cols=73  Identities=38%  Similarity=0.732  Sum_probs=68.4

Q ss_pred             cCCCCcCCEEEEcCCCceeEEEEecccCCCCCCcEEEEEEeCCCCCCCcEECCEEeeecCCCceeeecCCCCccC
Q 028484          121 CSNITVGDRCEVDPGAKRGVVKYVGQAESIAPGFWVGIQYDEPLGKHNGIVKGVRYFECPPLHGAMVRPDKVKVG  195 (208)
Q Consensus       121 ~~~~~vG~rv~v~~~~~~G~vryvG~~~~~~~g~wvGVelde~~GkndGs~~G~rYF~c~~~~G~Fv~~~~v~~g  195 (208)
                      ...|+||+||+|. +.++|+|||+|++++ +.|+|+|||||+|.|+|||+++|+|||+|+|+||+||++++|..-
T Consensus        22 ~~~l~vG~rV~v~-~~~~G~VryvG~~~~-~~g~~vGVeldep~GkndGt~~G~~YF~C~~~~GiFv~~~~v~~~   94 (102)
T d1whja_          22 SLGLKLGDRVVIA-GQKVGTLRFCGTTEF-ASGQWAGIELDEPEGKNNGSVGRVQYFKCAPKYGIFAPLSKISKL   94 (102)
T ss_dssp             HHTCCTTCEEEET-TTEEEEEEEEEECSS-SCSEEEEEEESSSCCSBSSEETTEECCCCCTTTEEEEEGGGEEES
T ss_pred             ccCCccCCEEEEC-CCCeEEEEEeeecCC-CCCcEEEEEECCCCCCCCCEECCEEEeecCCCcEEEecHHHeeEc
Confidence            4579999999996 578999999999999 899999999999999999999999999999999999999999753

>d1ixda_ b.34.10.1 (A:) Cylindromatosis tumour-suppressor Cyld {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: SH3-like barrel
superfamily: Cap-Gly domain
family: Cap-Gly domain
domain: Cylindromatosis tumour-suppressor Cyld
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.95  E-value=2.1e-28  Score=183.50  Aligned_cols=81  Identities=23%  Similarity=0.507  Sum_probs=73.1

Q ss_pred             cCCCCcCCEEEEcCC-CceeEEEEecccCCCCCCcEEEEEEe-CCCCCCCcEECCEEeeecCCCceeeecCCCCccC-CC
Q 028484          121 CSNITVGDRCEVDPG-AKRGVVKYVGQAESIAPGFWVGIQYD-EPLGKHNGIVKGVRYFECPPLHGAMVRPDKVKVG-DY  197 (208)
Q Consensus       121 ~~~~~vG~rv~v~~~-~~~G~vryvG~~~~~~~g~wvGVeld-e~~GkndGs~~G~rYF~c~~~~G~Fv~~~~v~~g-~f  197 (208)
                      ...|+||+||+|..+ .++|+|||+|++++ ..|+|+||||| ++.|+|||+++|+|||+|+++||+||++++|... +|
T Consensus        15 ~~~l~vG~rV~V~~~~~~~G~vryvG~~~~-~~g~~~GVeldd~~~G~ndGt~~G~rYF~C~~~~G~Fv~~~~~~~~~~f   93 (104)
T d1ixda_          15 SHGLEVGSLAEVKENPPFYGVIRWIGQPPG-LNEVLAGLELEDECAGCTDGTFRGTRYFTCALKKALFVKLKSCRPDSRF   93 (104)
T ss_dssp             SSCCCTTSEEEECSSSCCCEEEEEEECCSS-SCCCEEEEEESSCCTTCBSSEETTEECSCCCTTCBEEEEGGGEEECCTT
T ss_pred             CCCCccCCEEEECCCCCcEEEEEEEecCCC-CCCcEEEEEeCCCCCCCcCCEECCEEEEecCCCcEEEechHHCcccccc
Confidence            457999999999733 47899999999999 89999999996 5679999999999999999999999999999998 69


Q ss_pred             CCCCC
Q 028484          198 PERDP  202 (208)
Q Consensus       198 p~~d~  202 (208)
                      |++++
T Consensus        94 ~~~~p   98 (104)
T d1ixda_          94 ASLQP   98 (104)
T ss_dssp             CCCCS
T ss_pred             cCCCC
Confidence            98764

>d2cp6a1 b.34.10.1 (A:8-167) Restin {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: SH3-like barrel
superfamily: Cap-Gly domain
family: Cap-Gly domain
domain: Restin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.95  E-value=2.2e-28  Score=196.55  Aligned_cols=77  Identities=42%  Similarity=0.843  Sum_probs=71.7

Q ss_pred             cCCCCcCCEEEEcCCCceeEEEEecccCCCCCCcEEEEEEeCCCCCCCcEECCEEeeecCCCceeeecCCCCccCCCCC
Q 028484          121 CSNITVGDRCEVDPGAKRGVVKYVGQAESIAPGFWVGIQYDEPLGKHNGIVKGVRYFECPPLHGAMVRPDKVKVGDYPE  199 (208)
Q Consensus       121 ~~~~~vG~rv~v~~~~~~G~vryvG~~~~~~~g~wvGVelde~~GkndGs~~G~rYF~c~~~~G~Fv~~~~v~~g~fp~  199 (208)
                      ..+|+||+||.|. +.++|+|||||++++ +.|.|+|||||+|.|||||+|+|+|||+|+|+||+||++++|...+++.
T Consensus        29 ~~~~~vGdrV~v~-g~~~G~vr~iG~~~~-~~G~wvGVELd~p~GKNdGsv~G~~YF~c~~~~G~Fv~~s~v~~~~~~~  105 (160)
T d2cp6a1          29 ERELKIGDRVLVG-GTKAGVVRFLGETDF-AKGEWCGVELDEPLGKNDGAVAGTRYFQCQPKYGLFAPVHKVTKIGFPS  105 (160)
T ss_dssp             SSCCCSSCEEEET-TTEEEEEEEEEECSS-SSSEEEEEEESSSCCSBSSEETTEECCCCCTTTEEEEEGGGCEECCCSS
T ss_pred             CCCCccCCEEEEC-CCCeEEEEEecccCC-CCCCEEEEEeCCCCCCCCCEECCEEeeecCCCceEEecHhHceEcCCCC
Confidence            3579999999996 678999999999999 9999999999999999999999999999999999999999998876553

>d1whla_ b.34.10.1 (A:) Cylindromatosis tumour-suppressor Cyld {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: SH3-like barrel
superfamily: Cap-Gly domain
family: Cap-Gly domain
domain: Cylindromatosis tumour-suppressor Cyld
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.94  E-value=3.1e-27  Score=174.52  Aligned_cols=79  Identities=27%  Similarity=0.425  Sum_probs=68.5

Q ss_pred             cCCCCcCCEEEEcC----CCceeEEEEecccCCCC--CCcEEEEEEeC---CCCCCCcEECCEEeeecCCCceeeecCCC
Q 028484          121 CSNITVGDRCEVDP----GAKRGVVKYVGQAESIA--PGFWVGIQYDE---PLGKHNGIVKGVRYFECPPLHGAMVRPDK  191 (208)
Q Consensus       121 ~~~~~vG~rv~v~~----~~~~G~vryvG~~~~~~--~g~wvGVelde---~~GkndGs~~G~rYF~c~~~~G~Fv~~~~  191 (208)
                      .+.|.||+||+|..    ..++|+|||+|++++..  .|+|+|||||+   +.|+|||+++|+|||+|+|+||+||++++
T Consensus         5 ~~~l~vGs~V~V~~~~g~~~~~G~vryvG~~~~~~~~~G~~~GVeldd~~~~~Gk~dGt~~G~rYF~C~~~~GiFv~~~k   84 (95)
T d1whla_           5 SSGIDVGCPVKVQLRSGEEKFPGVVRFRGPLLAERTVSGIFFGVELLEEGRGQGFTDGVYQGKQLFQCDEDCGVFVALDK   84 (95)
T ss_dssp             CCCCCSSCEEEEECSSSSCEEEEEEEEECCCCSSSSCCCCCEEEEECSSSCSCCSSTTEETTEECCCCCTTTEEEECGGG
T ss_pred             cCCCccCCEEEEEecCCCCceeEEEEEeccCCCCCCCCceEEEEEecCCcCCCCccCCEECCEEEEecCCCcEEEecHHH
Confidence            45799999999951    24679999999998732  48999999976   45899999999999999999999999999


Q ss_pred             CccCCCCC
Q 028484          192 VKVGDYPE  199 (208)
Q Consensus       192 v~~g~fp~  199 (208)
                      |++.++||
T Consensus        85 v~~~~~~p   92 (95)
T d1whla_          85 LELIESGP   92 (95)
T ss_dssp             EEECCSCS
T ss_pred             eEEcccCC
Confidence            99998775

>d1whma_ b.34.10.1 (A:) Cylindromatosis tumour-suppressor Cyld {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: SH3-like barrel
superfamily: Cap-Gly domain
family: Cap-Gly domain
domain: Cylindromatosis tumour-suppressor Cyld
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.92  E-value=1.8e-25  Score=163.81  Aligned_cols=79  Identities=16%  Similarity=0.355  Sum_probs=69.0

Q ss_pred             hcCCCCcCCEEEEcC--CCceeEEEEecccCCC-CCCcEEEEEEeCCCCCCCcEECCEEeeecC-CCceeeecCCCCccC
Q 028484          120 LCSNITVGDRCEVDP--GAKRGVVKYVGQAESI-APGFWVGIQYDEPLGKHNGIVKGVRYFECP-PLHGAMVRPDKVKVG  195 (208)
Q Consensus       120 ~~~~~~vG~rv~v~~--~~~~G~vryvG~~~~~-~~g~wvGVelde~~GkndGs~~G~rYF~c~-~~~G~Fv~~~~v~~g  195 (208)
                      +...|.||+||+|..  +.++|||||+|.++.. ..|+|+|||||+|.|||||+++|+|||+|. ++||+||+++++...
T Consensus         6 s~~~l~vg~RV~V~~~~~~~~GtVryiG~lp~~~~~g~wvGVElDep~Gk~dGt~~G~r~f~~~~~~~g~fv~~~~~~~~   85 (92)
T d1whma_           6 SGPPLEINSRVSLKVGETIESGTVIFCDVLPGKESLGYFVGVDMDNPIGNWDGRFDGVQLCSFACVESTILLHINDIIPE   85 (92)
T ss_dssp             CSCSSCTTCEEEEEETTEEEEEEEEEEECCTTCTTTCCEEEEEESSSCCCCCSEETTEESCSSCCTTTEEEEEGGGEEEC
T ss_pred             cCCCceeCCEEEEecCCCceEEEEEEeCCCCCcCCCceEEEEEeCCCCCCCCCeECCEEEEEecCCCcEEEEehhhceEc
Confidence            345799999999952  3589999999998762 478999999999999999999999999996 589999999999887


Q ss_pred             -CCC
Q 028484          196 -DYP  198 (208)
Q Consensus       196 -~fp  198 (208)
                       +.|
T Consensus        86 ~s~p   89 (92)
T d1whma_          86 SSGP   89 (92)
T ss_dssp             CCCC
T ss_pred             CCCC
Confidence             455

>d1v6ea_ d.15.1.1 (A:) Ubiquitin-like domain of tubulin folding cofactor B {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Ubiquitin-like domain of tubulin folding cofactor B
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.72  E-value=3.8e-18  Score=125.23  Aligned_cols=65  Identities=31%  Similarity=0.432  Sum_probs=61.2

Q ss_pred             CCHHHHHHhcccccccCCCCeEEEEEcCCCCeeeecCCCCCcCCCCCCCCCcEEEEecCCCCCcc
Q 028484            1 MSVESVKDKLWRKCGTSVNSMSLELYDDTNTKVAALTDNSRPLGFYSPLQGYRLHVIDLDPSSVT   65 (208)
Q Consensus         1 ~TI~~LK~KLe~itGi~p~~m~L~l~~~~g~~~~~l~dd~~~L~~y~i~~g~~IhV~D~~p~s~~   65 (208)
                      +||.+||+|||.+|||||++|+|+|++.++..+..+.+|+++|++|++++|++|||+|++|.+.+
T Consensus        29 ~TV~~LK~kle~~tGip~~~qrL~~~~~~~~~~~~l~~d~~~L~~y~i~dg~~ihlvd~~p~~~s   93 (95)
T d1v6ea_          29 LTIAEFKCKLELVVGSPASCMELELYGADDKFYSKLDQEDALLGSYPVDDGCRIHVIDHSGSGPS   93 (95)
T ss_dssp             SBHHHHHHHHHHHTCSCTTTCBCEEECSSSCEEEECCCSSSBTTSSSCCTTCEEEEBCCSCCSSS
T ss_pred             CCHHHHHHHHHHHhCcCchhEEEEEeCCCCceeecccCCcCCHHHCCCCCCCEEEEEeCCCCCCC
Confidence            69999999999999999999999999888888888999999999999999999999999998754

>d1t0ya_ d.15.1.1 (A:) Ubiquitin-like domain of tubulin folding cofactor B {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Ubiquitin-like domain of tubulin folding cofactor B
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=99.68  E-value=2.7e-17  Score=119.38  Aligned_cols=61  Identities=34%  Similarity=0.555  Sum_probs=57.9

Q ss_pred             CCHHHHHHhcccccccCCCCeEEEEEcCCCCeeeecCCCCCcCCCCCCCCCcEEEEecCCC
Q 028484            1 MSVESVKDKLWRKCGTSVNSMSLELYDDTNTKVAALTDNSRPLGFYSPLQGYRLHVIDLDP   61 (208)
Q Consensus         1 ~TI~~LK~KLe~itGi~p~~m~L~l~~~~g~~~~~l~dd~~~L~~y~i~~g~~IhV~D~~p   61 (208)
                      +||.+||+||+.+|||||++|+|.+++..+..+..+++|+++|++|+++||++|||+|.+|
T Consensus        26 ~TV~~LK~kle~~~Gip~~~q~L~~~~~~~~~~~~l~dd~~~L~~ygi~dG~~Ihvvd~~~   86 (90)
T d1t0ya_          26 MSLNDLKKKLELVVGTTVDSMRIQLFDGDDQLKGELTDGAKSLKDLGVRDGYRIHAVDVTG   86 (90)
T ss_dssp             SBHHHHHHHHHHHHCCCTTTEEEEEECSSSSEEEECCCCSSBTTTTTCCSSEEEEEEECTT
T ss_pred             CCHHHHHHHHHHHHCCChhheEEEEeCCCCCcccccccCCCCHHHCCCCCCCEEEEEeCCC
Confidence            6999999999999999999999999988777878899999999999999999999999986

>d1wjna_ d.15.1.1 (A:) Tubulin-folding protein TbcE {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Tubulin-folding protein TbcE
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.48  E-value=2.3e-14  Score=104.88  Aligned_cols=63  Identities=32%  Similarity=0.336  Sum_probs=56.2

Q ss_pred             CCHHHHHHhcccccccCCCCeEEEEEcCCCC-eeeecCCCCCcCCCCCCCCCcEEEEecCCCCC
Q 028484            1 MSVESVKDKLWRKCGTSVNSMSLELYDDTNT-KVAALTDNSRPLGFYSPLQGYRLHVIDLDPSS   63 (208)
Q Consensus         1 ~TI~~LK~KLe~itGi~p~~m~L~l~~~~g~-~~~~l~dd~~~L~~y~i~~g~~IhV~D~~p~s   63 (208)
                      +||.+||.+|+.++|||++.|+|.+.+.... ....|++|+++|++|++++|++|||.|++|.|
T Consensus        33 ~TV~~LK~~i~~~~gip~~~qrL~y~~~~~~~~~~~l~~d~~tL~~YgI~dg~~I~V~~~~P~~   96 (97)
T d1wjna_          33 MTVQKVKGLLSRLLKVPVSELLLSYESSKMPGREIELENDLQPLQFYSVENGDCLLVRWSGPSS   96 (97)
T ss_dssp             SBHHHHHHHHHTTTTCCTTTCEEEEECTTSCSCEEECCCSSSBSGGGTCCTTCEEEEECCSSCC
T ss_pred             CCHHHHHHHHHHHHCcChHHeEEEecCCCCCcccceecCCCcCHhhccCCCCCEEEEEeCCCCC
Confidence            6999999999999999999999998865433 33458999999999999999999999999976

>d2bwfa1 d.15.1.1 (A:2-74) DSK2 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: DSK2
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.94  E-value=2.4e-10  Score=78.72  Aligned_cols=51  Identities=18%  Similarity=0.298  Sum_probs=46.0

Q ss_pred             CCHHHHHHhcccccccCCCCeEEEEEcCCCCeeeecCCCCCcCCCCCCCCCcEEEEec
Q 028484            1 MSVESVKDKLWRKCGTSVNSMSLELYDDTNTKVAALTDNSRPLGFYSPLQGYRLHVID   58 (208)
Q Consensus         1 ~TI~~LK~KLe~itGi~p~~m~L~l~~~~g~~~~~l~dd~~~L~~y~i~~g~~IhV~D   58 (208)
                      .||.+||++|+..+|+||+.|+|.+   .|+.   | +|+.+|++|++++|++||++-
T Consensus        21 ~tV~~lK~~I~~~~gip~~~qrLi~---~Gk~---L-~D~~tL~~~~I~~g~~i~lV~   71 (73)
T d2bwfa1          21 STVLQFKEAINKANGIPVANQRLIY---SGKI---L-KDDQTVESYHIQDGHSVHLVK   71 (73)
T ss_dssp             CBHHHHHHHHHHHHCCCGGGEEEEE---TTEE---C-CTTSBTGGGTCCTTCEEEEEE
T ss_pred             ChHHHHHHHHHHHHCcChHHeEEEE---CCeE---c-cCCCcHHHCCCCCCCEEEEEe
Confidence            4899999999999999999999998   5776   4 577899999999999999984

>d1wxva1 d.15.1.1 (A:7-87) Bag-family molecular chaperone regulator-1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Bag-family molecular chaperone regulator-1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.93  E-value=2.3e-10  Score=80.55  Aligned_cols=54  Identities=17%  Similarity=0.197  Sum_probs=48.6

Q ss_pred             CCHHHHHHhcccccccCCCCeEEEEEcCCCCeeeecCCCCCcCCCCCCCCCcEEEEecCC
Q 028484            1 MSVESVKDKLWRKCGTSVNSMSLELYDDTNTKVAALTDNSRPLGFYSPLQGYRLHVIDLD   60 (208)
Q Consensus         1 ~TI~~LK~KLe~itGi~p~~m~L~l~~~~g~~~~~l~dd~~~L~~y~i~~g~~IhV~D~~   60 (208)
                      .||++||++|+..||+||+.|+|.+   .|+.   |.+|+++|.+|++++|++|+++-..
T Consensus        26 ~Tv~~LK~~I~~~tgvp~~~QkL~~---~G~~---L~~d~~tL~~~gi~~g~~i~lv~~~   79 (81)
T d1wxva1          26 PVVQDLAQVVEEVIGVPQSFQKLIF---KGKS---LKEMETPLSALGIQDGCRVMLIGKK   79 (81)
T ss_dssp             CBHHHHHHHHHHHTCCCTTTCEEEE---TTEE---ECCSSSBHHHHTCCSSEEEEEESCC
T ss_pred             cHHHHHHHHHHHHHCcCHHHEEeee---cCeE---eCcCCCChHHCCCCCCCEEEEEEec
Confidence            4899999999999999999999987   4765   5688999999999999999999754

>d2zeqa1 d.15.1.1 (A:1-78) Ubiquitin-like domain of parkin {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Ubiquitin-like domain of parkin
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.92  E-value=3.6e-10  Score=78.88  Aligned_cols=51  Identities=14%  Similarity=0.227  Sum_probs=46.3

Q ss_pred             CCHHHHHHhcccccccCCCCeEEEEEcCCCCeeeecCCCCCcCCCCCCCCCcEEEEec
Q 028484            1 MSVESVKDKLWRKCGTSVNSMSLELYDDTNTKVAALTDNSRPLGFYSPLQGYRLHVID   58 (208)
Q Consensus         1 ~TI~~LK~KLe~itGi~p~~m~L~l~~~~g~~~~~l~dd~~~L~~y~i~~g~~IhV~D   58 (208)
                      .||.+||++|+..+||||+.|+|.+   .|+.   | +|+++|++|+++++++||++-
T Consensus        23 ~tV~~lK~~i~~~~gip~~~qrLi~---~Gk~---L-~d~~tL~~y~I~~~sti~lv~   73 (78)
T d2zeqa1          23 TSILQLKEVVAKRQGVPADQLRVIF---AGKE---L-PNHLTVQNCDLEQQSIVHIVQ   73 (78)
T ss_dssp             CBHHHHHHHHHHHHTCCGGGEEEEE---TTEE---E-CTTCBGGGSSCCTTCEEEEEE
T ss_pred             ccHHHHHHHHHHHHCcChhHeEEEE---eeeE---c-CCCCCHHHcCCCCCCEEEEEe
Confidence            4899999999999999999999998   5876   4 678999999999999999974

>d2faza1 d.15.1.1 (A:1-76) Ubiquitin-like PHD and RING finger domain-containing protein 1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Ubiquitin-like PHD and RING finger domain-containing protein 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.91  E-value=4.9e-10  Score=77.92  Aligned_cols=50  Identities=12%  Similarity=0.130  Sum_probs=45.6

Q ss_pred             CCHHHHHHhcccccccCCCCeEEEEEcCCCCeeeecCCCCCcCCCCCCCCCcEEEEe
Q 028484            1 MSVESVKDKLWRKCGTSVNSMSLELYDDTNTKVAALTDNSRPLGFYSPLQGYRLHVI   57 (208)
Q Consensus         1 ~TI~~LK~KLe~itGi~p~~m~L~l~~~~g~~~~~l~dd~~~L~~y~i~~g~~IhV~   57 (208)
                      .||++||++|+..+||||+.|+|.+   .|+.   | +|+++|++|+++++++||++
T Consensus        23 ~tV~~lK~~I~~~~gip~~~qrLi~---~Gk~---L-~D~~tL~~y~I~~~sti~lv   72 (76)
T d2faza1          23 TKVEELRRKIQELFHVEPGLQRLFY---RGKQ---M-EDGHTLFDYEVRLNDTIQLL   72 (76)
T ss_dssp             CBHHHHHHHHHHHHCCCGGGEEEEE---TTEE---C-CTTCBTTTTTCCTTCEEEEE
T ss_pred             CCHHHHHHHHHHHHCcChHHeEEEE---eeEe---c-cCCCcHHHcCCCCCCEEEEE
Confidence            3799999999999999999999998   5876   3 67899999999999999986

>d1z2ma1 d.15.1.1 (A:3-78) Interferon-induced 15 kDa protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Interferon-induced 15 kDa protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.90  E-value=5.9e-10  Score=77.36  Aligned_cols=52  Identities=21%  Similarity=0.268  Sum_probs=46.0

Q ss_pred             CCHHHHHHhcccccccCCCCeEEEEEcCCCCeeeecCCCCCcCCCCCCCCCcEEEEe
Q 028484            1 MSVESVKDKLWRKCGTSVNSMSLELYDDTNTKVAALTDNSRPLGFYSPLQGYRLHVI   57 (208)
Q Consensus         1 ~TI~~LK~KLe~itGi~p~~m~L~l~~~~g~~~~~l~dd~~~L~~y~i~~g~~IhV~   57 (208)
                      .||.+||++|+..+||||+.|+|.+.. .|+.   | .|+.+|++|++++|++||++
T Consensus        21 ~tV~~lK~~I~~~~gip~~~QrLi~~~-~Gk~---L-~D~~tL~~y~i~~g~~i~lv   72 (76)
T d1z2ma1          21 MSVSELKAQITQKIGVHAFQQRLAVHP-SGVA---L-QDRVPLASQGLGPGSTVLLV   72 (76)
T ss_dssp             CCHHHHHHHHHHHHCCCGGGEEEEEET-TCCB---C-CSSSCSGGGTCCTTCEEEEE
T ss_pred             CcHHHHHHHHHHHhccCCccEEEEEcC-CCee---c-cCCCcHHHcCCCCCCEEEEE
Confidence            489999999999999999999999753 3665   3 67899999999999999997

>d1z2ma2 d.15.1.1 (A:79-154) Interferon-induced 15 kDa protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Interferon-induced 15 kDa protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.89  E-value=4.6e-10  Score=77.59  Aligned_cols=50  Identities=18%  Similarity=0.204  Sum_probs=45.5

Q ss_pred             CCHHHHHHhcccccccCCCCeEEEEEcCCCCeeeecCCCCCcCCCCCCCCCcEEEEe
Q 028484            1 MSVESVKDKLWRKCGTSVNSMSLELYDDTNTKVAALTDNSRPLGFYSPLQGYRLHVI   57 (208)
Q Consensus         1 ~TI~~LK~KLe~itGi~p~~m~L~l~~~~g~~~~~l~dd~~~L~~y~i~~g~~IhV~   57 (208)
                      .||.+||++|+..+|+||+.|+|.+   .|+.   | +|+++|++|++++|++||++
T Consensus        24 ~tV~~lK~~I~~~~gi~~~~qrL~~---~gk~---L-~d~~tL~~y~I~~~sti~l~   73 (76)
T d1z2ma2          24 QTVAHLKQQVSGLEGVQDDLFWLTF---EGKP---L-EDQLPLGEYGLKPLSTVFMN   73 (76)
T ss_dssp             SBHHHHHHHHHHHHTCCGGGEEEEE---TTEE---C-CTTSBGGGGTCCTTCEEEEE
T ss_pred             CcHHHHHHHHHHHhcCChhHeEEEE---CCeE---C-CCCCcHHHcCCCCCCEEEEE
Confidence            4899999999999999999999998   5766   3 67899999999999999986

>d1bt0a_ d.15.1.1 (A:) Rub1 {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Rub1
species: Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=98.85  E-value=8.1e-10  Score=75.81  Aligned_cols=50  Identities=18%  Similarity=0.278  Sum_probs=45.5

Q ss_pred             CCHHHHHHhcccccccCCCCeEEEEEcCCCCeeeecCCCCCcCCCCCCCCCcEEEEe
Q 028484            1 MSVESVKDKLWRKCGTSVNSMSLELYDDTNTKVAALTDNSRPLGFYSPLQGYRLHVI   57 (208)
Q Consensus         1 ~TI~~LK~KLe~itGi~p~~m~L~l~~~~g~~~~~l~dd~~~L~~y~i~~g~~IhV~   57 (208)
                      .||.+||++|+..+|+||+.|+|.+   .|+.   | +|+++|++|++++|++||++
T Consensus        21 ~tV~~lK~~i~~~~gi~~~~qrLi~---~Gk~---L-~d~~tL~~y~I~~~sti~lv   70 (73)
T d1bt0a_          21 DTIDRIKERVEEKEGIPPVQQRLIY---AGKQ---L-ADDKTAKDYNIEGGSVLHLV   70 (73)
T ss_dssp             CBHHHHHHHHHHHHCCCGGGEEEEE---TTEE---C-CTTSBTGGGTCCTTCEEEEE
T ss_pred             CcHHHHHHHHHHHhCCChHHEEEEE---CCeE---c-CCCCcHHHcCCCCCCEEEEE
Confidence            4899999999999999999999998   5776   4 67899999999999999986

>d1wy8a1 d.15.1.1 (A:8-83) Ubiquitin-like PHD and RING finger domain-containing protein 2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Ubiquitin-like PHD and RING finger domain-containing protein 2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.84  E-value=5.8e-10  Score=77.57  Aligned_cols=50  Identities=14%  Similarity=0.253  Sum_probs=45.9

Q ss_pred             CCHHHHHHhcccccccCCCCeEEEEEcCCCCeeeecCCCCCcCCCCCCCCCcEEEEe
Q 028484            1 MSVESVKDKLWRKCGTSVNSMSLELYDDTNTKVAALTDNSRPLGFYSPLQGYRLHVI   57 (208)
Q Consensus         1 ~TI~~LK~KLe~itGi~p~~m~L~l~~~~g~~~~~l~dd~~~L~~y~i~~g~~IhV~   57 (208)
                      .||++||.+|+..+|||+++|+|.+   .|+.   | +|+++|++|++++|++||++
T Consensus        23 ~TV~~lK~~I~~~~gip~~~qrLi~---~Gk~---L-~d~~tL~~y~I~~~s~i~lv   72 (76)
T d1wy8a1          23 ATIEELRERVWALFDVRPECQRLFY---RGKQ---L-ENGYTLFDYDVGLNDIIQLL   72 (76)
T ss_dssp             CBHHHHHHHHHHHSCCCTTTEEEEE---TTEE---C-CSSSBHHHHTCCTTCEEEEE
T ss_pred             ChHHHHHHHHHHHHCCCchhcEEEE---EeeE---e-cCCCCHHHcCCCCCCEEEEE
Confidence            4899999999999999999999998   5776   3 67899999999999999997

>d1ogwa_ d.15.1.1 (A:) Ubiquitin {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Ubiquitin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.83  E-value=9.5e-10  Score=76.02  Aligned_cols=51  Identities=25%  Similarity=0.363  Sum_probs=45.9

Q ss_pred             CCHHHHHHhcccccccCCCCeEEEEEcCCCCeeeecCCCCCcCCCCCCCCCcEEEEec
Q 028484            1 MSVESVKDKLWRKCGTSVNSMSLELYDDTNTKVAALTDNSRPLGFYSPLQGYRLHVID   58 (208)
Q Consensus         1 ~TI~~LK~KLe~itGi~p~~m~L~l~~~~g~~~~~l~dd~~~L~~y~i~~g~~IhV~D   58 (208)
                      .||.+||++|+..+|+||+.|+|.+   .|+.   | +|+.+|++|++++|++||++=
T Consensus        21 ~tV~~lK~~I~~~~gi~~~~qrL~~---~Gk~---L-~d~~tL~~y~i~~~s~I~L~~   71 (76)
T d1ogwa_          21 DTIENVKAKIQDKEGIPPDQQRLIF---AGKQ---L-EDGRTLSDYNIQKESTLHLVL   71 (76)
T ss_dssp             SBHHHHHHHHHHHHCCCGGGEEEEE---TTEE---C-CTTSBGGGGTCCTTCEEEEEE
T ss_pred             CcHHHHHHhhhhhcCCChHHEEeEE---CCeE---c-CCCCCHHHcCCCCCCEEEEEE
Confidence            4899999999999999999999998   5765   3 678999999999999999873

>d1zkha1 d.15.1.1 (A:1-86) Splicing factor 3 subunit 1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Splicing factor 3 subunit 1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.83  E-value=6.9e-10  Score=78.96  Aligned_cols=51  Identities=20%  Similarity=0.316  Sum_probs=45.9

Q ss_pred             CCHHHHHHhcccccccCCCCeEEEEEcCCCCeeeecCCCCCcCCCCCCCCCcEEEEec
Q 028484            1 MSVESVKDKLWRKCGTSVNSMSLELYDDTNTKVAALTDNSRPLGFYSPLQGYRLHVID   58 (208)
Q Consensus         1 ~TI~~LK~KLe~itGi~p~~m~L~l~~~~g~~~~~l~dd~~~L~~y~i~~g~~IhV~D   58 (208)
                      .||++||++|+..+|+|++.|+|.+   .|+.   | .|+.+|++|++++|++||++-
T Consensus        32 ~tV~~lK~~I~~~~~ip~~~q~Li~---~Gk~---L-~D~~tL~dY~I~~gsti~l~~   82 (86)
T d1zkha1          32 DQVSVIKVKIHEATGMPAGKQKLQY---EGIF---I-KDSNSLAYYNMANGAVIHLAL   82 (86)
T ss_dssp             SBHHHHHHHHHHHTCCCTTTEEEEE---TTEE---E-CTTSBHHHHTCCTTEEEEEEE
T ss_pred             ChHHHHHHHHHhhhcCChHHEEEEe---CCcC---c-CCCCCHHHcCCCCCCEEEEEE
Confidence            4899999999999999999999998   5766   3 578999999999999999974

>d1v5ta_ d.15.1.1 (A:) 8430435i17rik protein {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: 8430435i17rik protein
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.81  E-value=4.7e-10  Score=80.14  Aligned_cols=56  Identities=14%  Similarity=0.057  Sum_probs=46.9

Q ss_pred             CCHHHHHHhcccccccCCCCeEEEEEcCCCCeeeecCCCCCcCCCCCCCCCcEEEEecCC
Q 028484            1 MSVESVKDKLWRKCGTSVNSMSLELYDDTNTKVAALTDNSRPLGFYSPLQGYRLHVIDLD   60 (208)
Q Consensus         1 ~TI~~LK~KLe~itGi~p~~m~L~l~~~~g~~~~~l~dd~~~L~~y~i~~g~~IhV~D~~   60 (208)
                      .||.+||++|+..||+||+.|+|.+..-.|+.   | +|+.+|.+|++++|++||++-+.
T Consensus        28 ~tV~~LK~~i~~~t~vp~~~QkLi~~~~~Gk~---L-~D~~tL~~~~i~~g~~i~lv~s~   83 (90)
T d1v5ta_          28 DTVLDLKQFLKTLTGVLPERQKLLGLKVKGKP---A-ENDVKLGALKLKPNTKIMMMGTR   83 (90)
T ss_dssp             SBHHHHHHHHHHHTCCCTTTCEEESCEETTEE---C-CTTSBHHHHTCCTTEEEEEECCC
T ss_pred             CcHHHHHHHHHHHHcCCHHHhhhhhhccCCcC---C-CCcCcHHHcCCCCCCEEEEEeeC
Confidence            48999999999999999999999842114654   3 56799999999999999999653

>d1wh3a_ d.15.1.1 (A:) 2'-5'-oligoadenylate synthetase-like protein, OASL {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: 2'-5'-oligoadenylate synthetase-like protein, OASL
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.81  E-value=7.7e-10  Score=78.53  Aligned_cols=54  Identities=17%  Similarity=0.167  Sum_probs=48.2

Q ss_pred             CCHHHHHHhcccccccCCCCeEEEEEcCCCCeeeecCCCCCcCCCCCCCCCcEEEEecCCC
Q 028484            1 MSVESVKDKLWRKCGTSVNSMSLELYDDTNTKVAALTDNSRPLGFYSPLQGYRLHVIDLDP   61 (208)
Q Consensus         1 ~TI~~LK~KLe~itGi~p~~m~L~l~~~~g~~~~~l~dd~~~L~~y~i~~g~~IhV~D~~p   61 (208)
                      .||.+||++|+..+||||+.|+|.+   .|+.   | +|+++|.+|+|+++++||++-..+
T Consensus        28 ~tV~~lK~~I~~~~gip~~~qrLi~---~Gk~---L-~d~~tL~~y~I~~~stl~l~~r~~   81 (87)
T d1wh3a_          28 SFILGLKQQIEDQQGLPKKQQQLEF---QGQV---L-QDWLGLGIYGIQDSDTLILSKKKG   81 (87)
T ss_dssp             SBHHHHHHHHHHHTCCCTTTEEEEE---TTEE---C-CSSSBHHHHTCCTTEEEEEEECSC
T ss_pred             CcHHHHHHHHHHHHCcChHHeEEEe---eceE---c-CCCCcHHHcCCCCCCEEEEEecCC
Confidence            4899999999999999999999998   5775   4 688999999999999999997543

>d1j8ca_ d.15.1.1 (A:) Ubiquitin-like N-terminal domain of PLIC-2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Ubiquitin-like N-terminal domain of PLIC-2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.80  E-value=2.2e-09  Score=78.43  Aligned_cols=50  Identities=16%  Similarity=0.270  Sum_probs=45.4

Q ss_pred             CCHHHHHHhcccccccCCCCeEEEEEcCCCCeeeecCCCCCcCCCCCCCCCcEEEEe
Q 028484            1 MSVESVKDKLWRKCGTSVNSMSLELYDDTNTKVAALTDNSRPLGFYSPLQGYRLHVI   57 (208)
Q Consensus         1 ~TI~~LK~KLe~itGi~p~~m~L~l~~~~g~~~~~l~dd~~~L~~y~i~~g~~IhV~   57 (208)
                      .||.+||++|+..+|+|++.|+|.+   .|+.   | .|+.+|.+|+|++|++||++
T Consensus        52 ~tV~~LK~~I~~~~gi~~~~qrLi~---~Gk~---L-~D~~tL~~~~I~~g~~I~lv  101 (103)
T d1j8ca_          52 SSVQQFKEAISKRFKSQTDQLVLIF---AGKI---L-KDQDTLIQHGIHDGLTVHLV  101 (103)
T ss_dssp             CCHHHHHHHHHHHHCSCSSSEEEEE---TTEE---E-STTSCGGGTTCSSSEEEEEE
T ss_pred             ChHHHHHHHHHHHHCcCHHHeeeee---eeec---c-cCCCcHHHcCCCCCCEEEEE
Confidence            4899999999999999999999998   5765   4 57889999999999999997

>d1m94a_ d.15.1.1 (A:) Ubiquitin-like modifier protein hub1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Ubiquitin-like modifier protein hub1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.79  E-value=8.2e-10  Score=76.05  Aligned_cols=50  Identities=24%  Similarity=0.203  Sum_probs=45.2

Q ss_pred             CCHHHHHHhcccccccCCCCeEEEEEcCCCCeeeecCCCCCcCCCCCCCCCcEEEEe
Q 028484            1 MSVESVKDKLWRKCGTSVNSMSLELYDDTNTKVAALTDNSRPLGFYSPLQGYRLHVI   57 (208)
Q Consensus         1 ~TI~~LK~KLe~itGi~p~~m~L~l~~~~g~~~~~l~dd~~~L~~y~i~~g~~IhV~   57 (208)
                      .||.+||++|+..+|+||+.|+|.+   .|+.   | +|+.+|++|++++|++||+.
T Consensus        22 ~tV~~lK~~I~~~~~i~~~~q~Li~---~Gk~---L-~d~~tL~~y~I~~gstl~L~   71 (73)
T d1m94a_          22 DSVGDFKKVLSLQIGTQPNKIVLQK---GGSV---L-KDHISLEDYEVHDQTNLELY   71 (73)
T ss_dssp             SBHHHHHHHHHHHHCCTTTSEEEES---SSCE---E-CTTSBHHHHTCCTTEEEEEE
T ss_pred             CcHHHHHHHHHHhhcccccEEEEEE---EeEE---e-cccCcHHHcCCCCCCEEEEE
Confidence            4899999999999999999999998   5776   4 57789999999999999974

>d1ttna1 d.15.1.1 (A:21-100) Dendritic cell-derived ubiquitin-like protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Dendritic cell-derived ubiquitin-like protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.79  E-value=1.2e-09  Score=76.35  Aligned_cols=54  Identities=19%  Similarity=0.168  Sum_probs=48.5

Q ss_pred             CCHHHHHHhcccccccCCCCeEEEEEcCCCCeeeecCCCCCcCCCCCCCCCcEEEEecCCC
Q 028484            1 MSVESVKDKLWRKCGTSVNSMSLELYDDTNTKVAALTDNSRPLGFYSPLQGYRLHVIDLDP   61 (208)
Q Consensus         1 ~TI~~LK~KLe~itGi~p~~m~L~l~~~~g~~~~~l~dd~~~L~~y~i~~g~~IhV~D~~p   61 (208)
                      .||.+||++|+..+|+|+..|+|.+   .|+.   | +|+++|++|+++++++||++-..|
T Consensus        24 ~tV~~lK~~I~~~~~ip~~~qrLi~---~Gk~---L-~d~~tL~~y~I~~~sti~lvi~~p   77 (80)
T d1ttna1          24 DTVFHMKRRLHAAEGVEPGSQRWFF---SGRP---L-TDKMKFEELKIPKDYVVQVIVSQP   77 (80)
T ss_dssp             SHHHHHHHHHHHTTCCCSTTCEEEE---TTEE---C-CTTSHHHHCCCSSSCEEEEECCCS
T ss_pred             CcHHHHHHHHHHHhCCCcccEEEEE---CceE---c-CCCCcHHHcCCCCCCEEEEEecCC
Confidence            4899999999999999999999998   5765   4 578999999999999999997665

>d1we6a_ d.15.1.1 (A:) Splicing factor 3 subunit 1, C-terminal domain {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Splicing factor 3 subunit 1, C-terminal domain
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=98.76  E-value=2.7e-09  Score=79.39  Aligned_cols=52  Identities=21%  Similarity=0.143  Sum_probs=46.6

Q ss_pred             CCHHHHHHhcccccccCCCCeEEEEEcCCCCeeeecCCCCCcCCCCCCCCCcEEEEecC
Q 028484            1 MSVESVKDKLWRKCGTSVNSMSLELYDDTNTKVAALTDNSRPLGFYSPLQGYRLHVIDL   59 (208)
Q Consensus         1 ~TI~~LK~KLe~itGi~p~~m~L~l~~~~g~~~~~l~dd~~~L~~y~i~~g~~IhV~D~   59 (208)
                      .||.+||+||+..+|||++.|+|.+   .|+.   | .|+.+|++|+|++|++||++-.
T Consensus        52 dtV~~lK~~I~~~~gip~~~QrLi~---~Gk~---L-~D~~tL~~ynI~~gsti~L~lr  103 (111)
T d1we6a_          52 ENVGSLKEKIAGEIQIPANKQKLSG---KAGF---L-KDNMSLAHYNVGAGEILTLSLR  103 (111)
T ss_dssp             SBHHHHHHHHHHHTTCCTTTSEEEC---SSSB---C-CTTSBTTTTTCSSSCEEEEECS
T ss_pred             cHHHHHHHHHHHHHCCCccceEEEE---eeEE---c-cccCCHHHcCCCCCCEEEEEee
Confidence            3899999999999999999999998   4765   3 5789999999999999999864

>d1v5oa_ d.15.1.1 (A:) 1700011n24rik protein {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: 1700011n24rik protein
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.73  E-value=2.4e-09  Score=78.50  Aligned_cols=56  Identities=16%  Similarity=0.208  Sum_probs=50.0

Q ss_pred             CCHHHHHHhcccccccCCCCeEEEEEcCCCCeeeecCCCCCcCCCCCCCCCcEEEEecCCCC
Q 028484            1 MSVESVKDKLWRKCGTSVNSMSLELYDDTNTKVAALTDNSRPLGFYSPLQGYRLHVIDLDPS   62 (208)
Q Consensus         1 ~TI~~LK~KLe~itGi~p~~m~L~l~~~~g~~~~~l~dd~~~L~~y~i~~g~~IhV~D~~p~   62 (208)
                      +||.+||++|+..+|||+++|+|.+   .|+.   |.+|.++|++|+|++|.+||++-..+.
T Consensus        32 ~tV~~LK~~Ie~~~gip~~~Q~Li~---~Gk~---L~dd~~tL~~~gI~~g~~i~l~~r~~~   87 (102)
T d1v5oa_          32 FELSNFRVLCELESGVPAEEAQIVY---MEQL---LTDDHCSLGSYGLKDGDMVVLLQKDNV   87 (102)
T ss_dssp             CBHHHHHHHHHHHTCCCGGGBCEEE---TTEE---ECCSSSBHHHHTCCTTEEEEECBCCCC
T ss_pred             ccHHHHHHHHHHHhCCCcceEEEEe---CCeE---eecccCCHHHcCCCCCCEEEEEECCCC
Confidence            5899999999999999999999998   5776   567889999999999999999976543

>d1wx8a1 d.15.1.1 (A:8-90) 4931431F19Rik {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: 4931431F19Rik
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.73  E-value=1.3e-09  Score=76.79  Aligned_cols=51  Identities=20%  Similarity=0.236  Sum_probs=45.8

Q ss_pred             CCHHHHHHhcccccccCCCCeEEEEEcCCCCeeeecCCCCCcCCCCCCCCCcEEEEec
Q 028484            1 MSVESVKDKLWRKCGTSVNSMSLELYDDTNTKVAALTDNSRPLGFYSPLQGYRLHVID   58 (208)
Q Consensus         1 ~TI~~LK~KLe~itGi~p~~m~L~l~~~~g~~~~~l~dd~~~L~~y~i~~g~~IhV~D   58 (208)
                      .||.+||++|+..+|+||+.|+|.+   .|+.   | .|+.+|++|++++|++||++=
T Consensus        30 ~tV~~lK~~I~~~~~v~~~~qrL~f---~Gk~---L-~d~~tL~~~gI~~gs~I~lv~   80 (83)
T d1wx8a1          30 SNVRRFKKQISKYLHCNADRLVLIF---TGKI---L-RDQDILSQRGILDGSTVHVVV   80 (83)
T ss_dssp             CCHHHHHHHHHHHTCSCTTTBCCEE---TTEE---C-CTTSCHHHHTCCTTEEEECCB
T ss_pred             ChHHHHHHHHHHHhCCChhHEEEEE---Ehhc---c-ccCCcHHHcCCCCCCEEEEEE
Confidence            5899999999999999999999998   5765   4 567799999999999999874

>d1yqba1 d.15.1.1 (A:15-98) Ubiquilin-3 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Ubiquilin-3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.71  E-value=3.1e-09  Score=74.90  Aligned_cols=54  Identities=11%  Similarity=0.249  Sum_probs=47.4

Q ss_pred             CCHHHHHHhcccccccCCCCeEEEEEcCCCCeeeecCCCCCcCCCCCCCCCcEEEEecCCC
Q 028484            1 MSVESVKDKLWRKCGTSVNSMSLELYDDTNTKVAALTDNSRPLGFYSPLQGYRLHVIDLDP   61 (208)
Q Consensus         1 ~TI~~LK~KLe~itGi~p~~m~L~l~~~~g~~~~~l~dd~~~L~~y~i~~g~~IhV~D~~p   61 (208)
                      .||.+||++|+..+|+||+.|+|.+   .|+.   | +|+.+|++|++++|++||++--.+
T Consensus        27 ~tV~~lK~~i~~~~gi~~~~qrL~~---~Gk~---L-~D~~tL~~y~i~~gsti~lv~r~~   80 (84)
T d1yqba1          27 CTIQQLKEEISQRFKAHPDQLVLIF---AGKI---L-KDPDSLAQCGVRDGLTVHLVIKRQ   80 (84)
T ss_dssp             CBHHHHHHHHHHHHTCCGGGEEEEE---TTEE---C-CTTSBHHHHTCCTTCEEEEEECCC
T ss_pred             CcHHHHHHHHHHHHCcCchhEEEEE---eeee---c-cccCcHHHcCCCCCCEEEEEECCC
Confidence            4899999999999999999999998   5765   4 577899999999999999985443

>d1wgga_ d.15.1.1 (A:) Ubiquitin carboxyl-terminal hydrolase 14 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Ubiquitin carboxyl-terminal hydrolase 14
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.68  E-value=5.2e-09  Score=75.61  Aligned_cols=51  Identities=14%  Similarity=0.149  Sum_probs=44.4

Q ss_pred             CCHHHHHHhcccccccCCCCeEEEEEcCCCCeeeecCCCCCcCCCCCCCCCcEEEEecC
Q 028484            1 MSVESVKDKLWRKCGTSVNSMSLELYDDTNTKVAALTDNSRPLGFYSPLQGYRLHVIDL   59 (208)
Q Consensus         1 ~TI~~LK~KLe~itGi~p~~m~L~l~~~~g~~~~~l~dd~~~L~~y~i~~g~~IhV~D~   59 (208)
                      .||.+||++|+..+||||+.|+|.+   .|+.   |.| + +|.+|++++|++||++=+
T Consensus        28 ~tV~~lK~~i~~~~gvp~~~QkLi~---~Gk~---L~d-~-tL~~~gi~~g~~i~lv~t   78 (96)
T d1wgga_          28 EPPMVFKAQLFALTGVQPARQKVMV---KGGT---LKD-D-DWGNIKMKNGMTVLMMGS   78 (96)
T ss_dssp             SCHHHHHHHHHHHTCCCTTTSCCEE---TTEE---CCS-S-CCCSCCCCSSCEEECCCC
T ss_pred             CcHHHHHHHhhhhcCccceeeEEee---cCcc---cCC-C-cHHHCCCCCCCEEEEEee
Confidence            4899999999999999999999998   4765   443 3 699999999999999844

>d1wx9a1 d.15.1.1 (A:8-80) Large proline-rich protein BAT3 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Large proline-rich protein BAT3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.64  E-value=2.3e-09  Score=73.68  Aligned_cols=53  Identities=19%  Similarity=0.333  Sum_probs=46.1

Q ss_pred             CCHHHHHHhcccccccCCCCeEEEEEcCCCCeeeecCCCCCcCCCCCCCCCcEEEEecCCC
Q 028484            1 MSVESVKDKLWRKCGTSVNSMSLELYDDTNTKVAALTDNSRPLGFYSPLQGYRLHVIDLDP   61 (208)
Q Consensus         1 ~TI~~LK~KLe~itGi~p~~m~L~l~~~~g~~~~~l~dd~~~L~~y~i~~g~~IhV~D~~p   61 (208)
                      .||.+||++|+..+|+||+.|+|.+   .|+.   | .|+++|++|++ ++++||++-..|
T Consensus        21 ~tV~~lK~~I~~~~gip~~~qrLi~---~Gk~---L-~d~~tL~dy~i-~~~ti~lv~r~P   73 (73)
T d1wx9a1          21 MNVKEFKEHIAASVSIPSEKQRLIY---QGRV---L-QDDKKLQEYNV-GGKVIHLVERAP   73 (73)
T ss_dssp             SBHHHHHHHHHHHHCCCTTTCCCEE---TTEE---C-CSSSBHHHHTC-TTEEEBCCCSSC
T ss_pred             ChHHHHHHHHHHHhCCChHHEEEEE---CCeE---c-cCCCCHHHhCC-CCCEEEEEecCC
Confidence            4899999999999999999999998   5775   4 57899999999 589999986544

>d1oqya4 d.15.1.1 (A:1-77) Ubiquitin-like domain of Rad23 homolog A (Hhr23a) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Ubiquitin-like domain of Rad23 homolog A (Hhr23a)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.61  E-value=1.4e-08  Score=70.12  Aligned_cols=50  Identities=20%  Similarity=0.207  Sum_probs=44.7

Q ss_pred             CCHHHHHHhcccccc---cCCCCeEEEEEcCCCCeeeecCCCCCcCCCCCCCCCcEEEEe
Q 028484            1 MSVESVKDKLWRKCG---TSVNSMSLELYDDTNTKVAALTDNSRPLGFYSPLQGYRLHVI   57 (208)
Q Consensus         1 ~TI~~LK~KLe~itG---i~p~~m~L~l~~~~g~~~~~l~dd~~~L~~y~i~~g~~IhV~   57 (208)
                      .||.+||++|+...|   +||+.|+|.+   .|+.   | +|+++|++|+++++++|+|.
T Consensus        23 ~TV~~lK~~i~~~~g~~~i~~~~qrLi~---~Gk~---L-~D~~tL~~y~I~~~s~i~~~   75 (77)
T d1oqya4          23 ETVKVLKEKIEAEKGRDAFPVAGQKLIY---AGKI---L-SDDVPIRDYRIDEKNFVVVM   75 (77)
T ss_dssp             CBHHHHHHHHHHHTCSSSCCSTEEEEES---SSSE---E-CSSSBTTTTCCCTTSCEEEE
T ss_pred             CcHHHHHHHHHHhcCCCCCChHHEEeEE---CCcC---c-cCCCcHHHcCCCCCCEEEEE
Confidence            489999999999988   9999999998   5876   4 57899999999999999885

>d1uh6a_ d.15.1.1 (A:) Ubiquitin-like protein 5, ubl5 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Ubiquitin-like protein 5, ubl5
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.60  E-value=6e-09  Score=76.14  Aligned_cols=50  Identities=22%  Similarity=0.270  Sum_probs=45.2

Q ss_pred             CCHHHHHHhcccccccCCCCeEEEEEcCCCCeeeecCCCCCcCCCCCCCCCcEEEEe
Q 028484            1 MSVESVKDKLWRKCGTSVNSMSLELYDDTNTKVAALTDNSRPLGFYSPLQGYRLHVI   57 (208)
Q Consensus         1 ~TI~~LK~KLe~itGi~p~~m~L~l~~~~g~~~~~l~dd~~~L~~y~i~~g~~IhV~   57 (208)
                      .||.+||++|+..+|+||+.|+|.+   .|+.   | .|+.+|++|+|++|++||+.
T Consensus        49 ~TV~~LK~~I~~~~gip~~~qrLi~---~Gk~---L-~D~~tL~dygI~~GstI~L~   98 (100)
T d1uh6a_          49 DTIGDLKKLIAAQTGTRWNKIVLKK---WYTI---F-KDHVSLGDYEIHDGMNLELY   98 (100)
T ss_dssp             SBHHHHHHHHHHHHCCCGGGCEEEE---TTEE---C-CSSCBHHHHTCCTTEEEEEE
T ss_pred             ChHHHHHHHHHHHHCCCcceEEEEE---Eeec---c-cCcCCHHHcCCCCCCEEEEE
Confidence            4899999999999999999999998   4765   3 78899999999999999974

>d1v86a_ d.15.1.1 (A:) hypothetical D7wsu128e protein {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: hypothetical D7wsu128e protein
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.59  E-value=3e-09  Score=76.78  Aligned_cols=52  Identities=12%  Similarity=0.129  Sum_probs=45.3

Q ss_pred             CCHHHHHHhcccccccCCCCeEEEEEcCCCCeeeecCCCCCcCCCCCCCCCcEEEEecCC
Q 028484            1 MSVESVKDKLWRKCGTSVNSMSLELYDDTNTKVAALTDNSRPLGFYSPLQGYRLHVIDLD   60 (208)
Q Consensus         1 ~TI~~LK~KLe~itGi~p~~m~L~l~~~~g~~~~~l~dd~~~L~~y~i~~g~~IhV~D~~   60 (208)
                      .||.+||++|+..|||||+.|+|.+   .|+    | .|+++|.+|+|.+|++||++-+.
T Consensus        37 ~TV~~LK~~I~~~tgvp~~~q~Li~---~g~----l-~D~~tL~~~~I~~gs~i~lvgs~   88 (95)
T d1v86a_          37 STGSELKQKIHSITGLPPAMQKVMY---KGL----V-PEDKTLREIKVTSGAKIMVVGST   88 (95)
T ss_dssp             SBHHHHHHHHHHHHCSCSTTCCCBS---SSB----C-CSSSBHHHHCCCTTEEEEECCSS
T ss_pred             CcHHHHHHHHHHHhCCChhHEEEEe---ccc----c-cCCCcHHHCCCCCCCEEEEEecC
Confidence            4899999999999999999999986   343    2 56889999999999999999653

>d1uela_ d.15.1.1 (A:) Ubiquitin-like domain of Rad23 homolog B (Hhr23B) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Ubiquitin-like domain of Rad23 homolog B (Hhr23B)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.57  E-value=3.4e-08  Score=70.70  Aligned_cols=57  Identities=21%  Similarity=0.236  Sum_probs=48.6

Q ss_pred             CCHHHHHHhcccccc---cCCCCeEEEEEcCCCCeeeecCCCCCcCCCCCCCCCcEEEEecCCCCCc
Q 028484            1 MSVESVKDKLWRKCG---TSVNSMSLELYDDTNTKVAALTDNSRPLGFYSPLQGYRLHVIDLDPSSV   64 (208)
Q Consensus         1 ~TI~~LK~KLe~itG---i~p~~m~L~l~~~~g~~~~~l~dd~~~L~~y~i~~g~~IhV~D~~p~s~   64 (208)
                      .||.+||++|+..+|   +|++.|+|.+   .|+.   | +|+.+|++|+|.+|++||++=..|...
T Consensus        21 ~TV~~lK~~i~~~~~~~~i~~~~qrLi~---~Gk~---L-~d~~tL~~y~I~~~s~i~lv~~~~~~~   80 (95)
T d1uela_          21 ETVKALKEKIESEKGKDAFPVAGQKLIY---AGKI---L-NDDTALKEYKIDEKNFVVVMVTKPKAV   80 (95)
T ss_dssp             SBHHHHHHHHHHHHCTTTCCTTTEEEEE---TTEE---C-CTTSBGGGGTCCSSSEEEEEESSCCCC
T ss_pred             ccHHHHHHHHHhhhcccCCCccceEEEE---CCeE---c-cCCCcHHHcCCCCCCEEEEEECCCCCC
Confidence            489999999999886   8999999998   5776   4 567899999999999999987666443

>d1wjua_ d.15.1.1 (A:) NEDD8 ultimate buster-1, NUB1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: NEDD8 ultimate buster-1, NUB1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.52  E-value=3e-08  Score=72.18  Aligned_cols=56  Identities=16%  Similarity=0.249  Sum_probs=49.2

Q ss_pred             CCHHHHHHhcccccccCCCCeEEEEEcCCCCeeeecCCCCCcCCCCCCCCCcEEEEecCCCCC
Q 028484            1 MSVESVKDKLWRKCGTSVNSMSLELYDDTNTKVAALTDNSRPLGFYSPLQGYRLHVIDLDPSS   63 (208)
Q Consensus         1 ~TI~~LK~KLe~itGi~p~~m~L~l~~~~g~~~~~l~dd~~~L~~y~i~~g~~IhV~D~~p~s   63 (208)
                      +||.+||.+|+..+|+||..|+|.+   .|+.   | +|+.+|.+|+|+++++|||+=...++
T Consensus        40 ~TV~~LK~~I~~~~gi~~~~qkLi~---~Gk~---L-~d~~tL~~~gI~~~s~i~vi~~~~~~   95 (100)
T d1wjua_          40 ITGRELRSKIAETFGLQENYIKIVI---NKKQ---L-QLGKTLEEQGVAHNVKAMVLELKQSS   95 (100)
T ss_dssp             SBHHHHHHHHHHHTTCCSTTCEEEE---TTEE---C-CTTSBHHHHTCCSSEEEEEECCCCCC
T ss_pred             cHHHHHHHHHHHHHCCCCeeEEEEE---cccC---c-CCCcCHHHcCCCCCCEEEEEEcCCCC
Confidence            5899999999999999999999999   5876   3 67899999999999999999665433

>d1wiaa_ d.15.1.1 (A:) Ubiquitin-like protein bab25500 (2010008E23Rik) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Ubiquitin-like protein bab25500 (2010008E23Rik)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.47  E-value=1.6e-07  Score=67.66  Aligned_cols=55  Identities=20%  Similarity=0.242  Sum_probs=46.7

Q ss_pred             CCHHHHHHhcccccccCCCCeEEEEEcCCCCeeeecCCCCCcCCCCCCCCCcEEEEecCCCCCc
Q 028484            1 MSVESVKDKLWRKCGTSVNSMSLELYDDTNTKVAALTDNSRPLGFYSPLQGYRLHVIDLDPSSV   64 (208)
Q Consensus         1 ~TI~~LK~KLe~itGi~p~~m~L~l~~~~g~~~~~l~dd~~~L~~y~i~~g~~IhV~D~~p~s~   64 (208)
                      .||.+||.||+.   ++++.|+|.+   .|+.   |.+|.++|.+|+|.+|++||++=..|...
T Consensus        28 ~TV~~lK~~i~~---~~~~~qrLi~---~Gk~---L~dd~~tL~~y~i~~g~~v~l~~~~~~~~   82 (95)
T d1wiaa_          28 DTVGTLKSKYFP---GQESQMKLIY---QGRL---LQDPARTLSSLNITNNCVIHCHRSPPGAA   82 (95)
T ss_dssp             SBHHHHHHHHSS---STTTTCEEEE---TTEE---CCCSSCBTTTTTCCTTEEEEEECCCCCCC
T ss_pred             CcHHHHHHHHhc---CCcceeEEEE---CCEE---cccCCCCHHHcCCCCCCEEEEEEcCCCCC
Confidence            489999999974   5889999998   5776   66788999999999999999998766543

>d1wgha_ d.15.1.1 (A:) Ubiquitin-like protein 3, Ubl3 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Ubiquitin-like protein 3, Ubl3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.39  E-value=2.2e-07  Score=69.37  Aligned_cols=50  Identities=18%  Similarity=0.168  Sum_probs=44.2

Q ss_pred             CCHHHHHHhc--------ccccccCCCCeEEEEEcCCCCeeeecCCCCCcCCCCCCCCCcE--EEEe
Q 028484            1 MSVESVKDKL--------WRKCGTSVNSMSLELYDDTNTKVAALTDNSRPLGFYSPLQGYR--LHVI   57 (208)
Q Consensus         1 ~TI~~LK~KL--------e~itGi~p~~m~L~l~~~~g~~~~~l~dd~~~L~~y~i~~g~~--IhV~   57 (208)
                      .||.+||++|        +...|+||+.|||++   .|+.   | .|+.+|++|+|.+|.+  ||++
T Consensus        37 ~TV~~lK~~I~~~~p~~~~e~~~~~~~~qRLiy---~Gk~---L-~D~~tL~~~~i~~g~~~~lhlv   96 (116)
T d1wgha_          37 DSASDIAKHVYDNWPMDWEEEQVSSPNILRLIY---QGRF---L-HGNVTLGALKLPFGKTTVMHLV   96 (116)
T ss_dssp             CBHHHHHHHHHHSSSCCSSCCCCCCTTTEEEEE---TTEE---E-CSSCBTTTTTCCSSCEEEEEEE
T ss_pred             chHHHHHHHHHhhcccccccccCCChHHeEEEE---CCEE---e-cCCCCHHHcCCCCCCEEEEEEE
Confidence            5899999999        688999999999998   5876   3 7899999999999975  7776

>d1v2ya_ d.15.1.1 (A:) Ubiquitin-like protein 3300001g02rik {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Ubiquitin-like protein 3300001g02rik
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.36  E-value=1.3e-08  Score=74.78  Aligned_cols=52  Identities=19%  Similarity=0.192  Sum_probs=45.8

Q ss_pred             CCHHHHHHhcccccccCCCCeE---------------EEEEcCCCCeeeecCCCCCcCCCCCCCCCcEEEEec
Q 028484            1 MSVESVKDKLWRKCGTSVNSMS---------------LELYDDTNTKVAALTDNSRPLGFYSPLQGYRLHVID   58 (208)
Q Consensus         1 ~TI~~LK~KLe~itGi~p~~m~---------------L~l~~~~g~~~~~l~dd~~~L~~y~i~~g~~IhV~D   58 (208)
                      .||.+||.+|+..+||||+.|+               |.+   .|+.   |.++..+|.+|+|++|++||++-
T Consensus        28 ~TV~~LK~~I~~~~~ip~~~Qr~~~~~~~~~~~~~~~Li~---~G~~---L~d~~~tL~~~gI~~g~~l~lv~   94 (105)
T d1v2ya_          28 ATVLDLKKAIQRYVQLKQEREGGVQHISWSYVWRTYHLTS---AGEK---LTEDRKKLRDYGIRNRDEVSFIK   94 (105)
T ss_dssp             CBHHHHHHHHHHHHHHHHHHTTCCCCCCHHHHHTTEEEES---SSCE---ECCSSSBHHHHTCCSSEEEEEEE
T ss_pred             ChHHHHHHHHHHHHCcCHHHhcccccccccccccceEEEE---CCEE---CcccCCCHHHcCCCCCCEEEEEE
Confidence            4899999999999999999998               666   4666   55777899999999999999985

>d1se9a_ d.15.1.1 (A:) Hypothetical protein At3g01050 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Hypothetical protein At3g01050
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=98.33  E-value=1.5e-07  Score=68.65  Aligned_cols=54  Identities=24%  Similarity=0.314  Sum_probs=45.8

Q ss_pred             CCHHHHHHhccc-----ccccC--CCCeEEEEEcCCCCeeeecCCCCCcCCCCCCCCCc------EEEEecCCC
Q 028484            1 MSVESVKDKLWR-----KCGTS--VNSMSLELYDDTNTKVAALTDNSRPLGFYSPLQGY------RLHVIDLDP   61 (208)
Q Consensus         1 ~TI~~LK~KLe~-----itGi~--p~~m~L~l~~~~g~~~~~l~dd~~~L~~y~i~~g~------~IhV~D~~p   61 (208)
                      .||.+||++|+.     ..|+|  |++|||++   .|+.   | +|+++|++|++.+|.      ++|++=-.|
T Consensus        29 ~TV~~lK~~I~~~~~~~k~~iP~~~~~qRLIf---~Gk~---L-~D~~tL~dy~i~~g~~~~~~~tmHlVvrpp   95 (101)
T d1se9a_          29 TTVSALKETVISEWPREKENGPKTVKEVKLIS---AGKV---L-ENSKTVKDYRSPVSNLAGAVTTMHVIIQAP   95 (101)
T ss_dssp             CBHHHHHHHHHHHSCTTCSSSCCSGGGEEEEE---TTEE---C-CTTSBGGGGSCCTTSCTTCCEEEEEEECCC
T ss_pred             CHHHHHHHHHHHhccccccCCCCCcccEEEEE---CCeE---e-cCCCCHHHcCCCCCCcCCCceEEEEEeCCC
Confidence            489999999975     48998  88999998   5876   4 788999999999997      999995443

>d2c9wb1 d.15.1.1 (B:2-104) Elongin B {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Elongin B
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.13  E-value=3.3e-07  Score=67.01  Aligned_cols=44  Identities=16%  Similarity=0.062  Sum_probs=38.8

Q ss_pred             CCHHHHHHhcccccccCCCCeEEEEEcCCCCeeeecCCCCCcCCCCCCCCC
Q 028484            1 MSVESVKDKLWRKCGTSVNSMSLELYDDTNTKVAALTDNSRPLGFYSPLQG   51 (208)
Q Consensus         1 ~TI~~LK~KLe~itGi~p~~m~L~l~~~~g~~~~~l~dd~~~L~~y~i~~g   51 (208)
                      .||.+||+||+.++|||+++|+|.+   .|+.   | +|+++|++|+|.+.
T Consensus        21 ~TV~~lK~~I~~~~gip~~~QrLi~---~Gk~---L-~D~~TL~dYgI~~~   64 (103)
T d2c9wb1          21 STVFELKRIVEGILKRPPDEQRLYK---DDQL---L-DDGKTLGECGFTSQ   64 (103)
T ss_dssp             SBHHHHHHHHHHHHCCCGGGEEEEE---TTEE---C-CTTSBHHHHTCCTT
T ss_pred             CcHHHHHHHHHHHhCCCcccEEEEE---CCEE---c-CCCCCHHHcCCCcc
Confidence            4899999999999999999999998   5766   4 78899999999554

>d1wgda_ d.15.1.1 (A:) Homocysteine-responsive endoplasmic reticulum-resident ubiquitin-like domain member 1 protein, HERPUD1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Homocysteine-responsive endoplasmic reticulum-resident ubiquitin-like domain member 1 protein, HERPUD1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.13  E-value=8.6e-07  Score=63.31  Aligned_cols=55  Identities=20%  Similarity=0.100  Sum_probs=45.0

Q ss_pred             CCHHHHHHhcccccc--cCCCCeEEEEEcCCCCeeeecCCCCCcCCCCC--CCCCcEEEEecCCCCC
Q 028484            1 MSVESVKDKLWRKCG--TSVNSMSLELYDDTNTKVAALTDNSRPLGFYS--PLQGYRLHVIDLDPSS   63 (208)
Q Consensus         1 ~TI~~LK~KLe~itG--i~p~~m~L~l~~~~g~~~~~l~dd~~~L~~y~--i~~g~~IhV~D~~p~s   63 (208)
                      +||.+||++|+...|  +||++|||++   .|+.   | .|+.+|++|.  ..++.+||++ +++.+
T Consensus        30 ~TV~~LK~~I~~~~~~~~~~~~qrLIy---~Gk~---L-~D~~~L~d~~~~~~~~~viHLV-~~~~~   88 (93)
T d1wgda_          30 WSVGHLKAHLSRVYPERPRPEDQRLIY---SGKL---L-LDHQCLRDLLPKQEKRHVLHLV-CNVKS   88 (93)
T ss_dssp             SCHHHHHHHHHHHSTTCCCTTTCEEEE---TTEE---C-CSSSCHHHHSCSSSCSEEEEEE-CCCCC
T ss_pred             CcHHHHHHHHHHHcCCCCChHHEEEEE---CCeE---c-cCCCCHHHhCcccCCCCEEEEE-ecCCC
Confidence            599999999999865  9999999998   5875   3 8999999995  4566799999 55443

>d1x1ma1 d.15.1.1 (A:8-101) Ubiquitin-like protein 7 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Ubiquitin-like protein 7
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.12  E-value=5.7e-07  Score=64.77  Aligned_cols=51  Identities=24%  Similarity=0.348  Sum_probs=43.3

Q ss_pred             CCHHHHHHhccccc--ccC-CCCeEEEEEcCCCCeeeecCCCCCcCCCCCCCCCcEEEEec
Q 028484            1 MSVESVKDKLWRKC--GTS-VNSMSLELYDDTNTKVAALTDNSRPLGFYSPLQGYRLHVID   58 (208)
Q Consensus         1 ~TI~~LK~KLe~it--Gi~-p~~m~L~l~~~~g~~~~~l~dd~~~L~~y~i~~g~~IhV~D   58 (208)
                      .||.+||++|....  ++| |+.|+|++   .|+.   | +|+.+|.+|++++|++||++-
T Consensus        38 ~tV~~lK~~i~~~~~~~~P~p~~~rLIy---~Gk~---L-~D~~tL~~y~I~~gstihLV~   91 (94)
T d1x1ma1          38 YSISFLKQLIAGKLQESVPDPELIDLIY---CGRK---L-KDDQTLDFYGIQPGSTVHVLR   91 (94)
T ss_dssp             CBHHHHHHHHHHHCTTTCCCSSSEEEEE---TTEE---C-CTTCBHHHHTCCTTCEEEEEE
T ss_pred             cCHHHHHHHHHHHcccCCCChhheEEEE---CCeE---E-CCCccHHHcCCCCCCEEEEEE
Confidence            48999999998775  444 68999998   5876   4 688999999999999999984

>d1euvb_ d.15.1.1 (B:) SUMO-1 (smt3 homologue) {Baker's yeast (Saccharomyces cerevisiae), smt3 [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: SUMO-1 (smt3 homologue)
species: Baker's yeast (Saccharomyces cerevisiae), smt3 [TaxId: 4932]

Probab=97.91  E-value=5.2e-06  Score=57.06  Aligned_cols=50  Identities=4%  Similarity=0.094  Sum_probs=45.3

Q ss_pred             CCHHHHHHhcccccccCCCCeEEEEEcCCCCeeeecCCCCCcCCCCCCCCCcEEEEe
Q 028484            1 MSVESVKDKLWRKCGTSVNSMSLELYDDTNTKVAALTDNSRPLGFYSPLQGYRLHVI   57 (208)
Q Consensus         1 ~TI~~LK~KLe~itGi~p~~m~L~l~~~~g~~~~~l~dd~~~L~~y~i~~g~~IhV~   57 (208)
                      .|+..|+..+....|++++.|+|.+   +|+.+    ++..++.+|++++|.+|||+
T Consensus        24 ~~~~~l~~~~~~~~~i~~~~~~l~f---~G~~l----~~~~T~~~~~i~dgd~I~v~   73 (79)
T d1euvb_          24 TPLRRLMEAFAKRQGKEMDSLRFLY---DGIRI----QADQTPEDLDMEDNDIIEAH   73 (79)
T ss_dssp             SCTHHHHHHHHHHTTCCGGGEEEEE---TTEEC----CTTCCTTTTTCCTTEEEEEE
T ss_pred             CcHHHHHHHHHHHhCCChHhEEEEE---CCEEe----CCCCCHHHCCCCCCCEEEEE
Confidence            3789999999999999999999998   68763    67789999999999999997

>d1wf9a1 d.15.1.1 (A:8-101) NPL4-like protein 1 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: NPL4-like protein 1
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=97.46  E-value=1.3e-05  Score=57.11  Aligned_cols=57  Identities=9%  Similarity=0.138  Sum_probs=45.4

Q ss_pred             CCHHHHHHhcccccccCCCCeEEEEEc----CCC----CeeeecCCCCCcCCCCCCCCCcEEEEe
Q 028484            1 MSVESVKDKLWRKCGTSVNSMSLELYD----DTN----TKVAALTDNSRPLGFYSPLQGYRLHVI   57 (208)
Q Consensus         1 ~TI~~LK~KLe~itGi~p~~m~L~l~~----~~g----~~~~~l~dd~~~L~~y~i~~g~~IhV~   57 (208)
                      .|+++||.+|+...+||.+.|+|++.-    +..    .....|.++..+|.++++.+|+.|++.
T Consensus        21 ~Tl~~LK~~Ie~~L~VPv~~Q~LSl~~~llL~k~P~~~~~~~~l~d~~~~L~sl~i~hGsivyL~   85 (94)
T d1wf9a1          21 ITVSQLKTLIQDQLQIPIHNQTLSTNRNLLLAKSPSDFLAFTDMADPNLRISSLNLAHGSMVYLA   85 (94)
T ss_dssp             SBHHHHHHHHHHHSCCCTTTCCCBSSGGGGTCCSHHHHTTCCSSCCTTCBGGGTCCCTTCEEECC
T ss_pred             CcHHHHHHHHHHHhCCCcccceeecChhhhccCCccccchhhhccCCccCHHHcCccCceEEEEE
Confidence            489999999999999999999998730    000    011236788999999999999999975

>d2uyzb1 d.15.1.1 (B:20-96) SUMO-1 (smt3 homologue) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: SUMO-1 (smt3 homologue)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.08  E-value=9.6e-05  Score=50.22  Aligned_cols=49  Identities=10%  Similarity=0.202  Sum_probs=44.2

Q ss_pred             CHHHHHHhcccccccCCCCeEEEEEcCCCCeeeecCCCCCcCCCCCCCCCcEEEEe
Q 028484            2 SVESVKDKLWRKCGTSVNSMSLELYDDTNTKVAALTDNSRPLGFYSPLQGYRLHVI   57 (208)
Q Consensus         2 TI~~LK~KLe~itGi~p~~m~L~l~~~~g~~~~~l~dd~~~L~~y~i~~g~~IhV~   57 (208)
                      |+..|+.......|++++.++|.+   +|..+    ++..|+.+|+++||.+|+|+
T Consensus        24 ~l~kl~~~y~~~~~~~~~~~~f~f---dG~~l----~~~~T~~~l~~edgD~Idv~   72 (77)
T d2uyzb1          24 HLKKLKESYCQRQGVPMNSLRFLF---EGQRI----ADNHTPKELGMEEEDVIEVY   72 (77)
T ss_dssp             CTHHHHHHHHHHHTCCGGGEEEEE---TTEEC----CTTCCHHHHTCCTTEEEEEE
T ss_pred             hHHHHHHHHHHHhCCChhHEEEEE---CCEEC----CCCCCHHHcCCCCCCEEEEE
Confidence            788999999999999999999998   68763    56689999999999999997

>d1wm3a_ d.15.1.1 (A:) SUMO-2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: SUMO-2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.07  E-value=0.11  Score=34.01  Aligned_cols=49  Identities=6%  Similarity=0.149  Sum_probs=40.0

Q ss_pred             CHHHHHHhcccccccCCCCeEEEEEcCCCCeeeecCCCCCcCCCCCCCCCcEEEEe
Q 028484            2 SVESVKDKLWRKCGTSVNSMSLELYDDTNTKVAALTDNSRPLGFYSPLQGYRLHVI   57 (208)
Q Consensus         2 TI~~LK~KLe~itGi~p~~m~L~l~~~~g~~~~~l~dd~~~L~~y~i~~g~~IhV~   57 (208)
                      +++-|........|++++.+++.+   +|..+    +...|..++++++|..|-|.
T Consensus        23 ~l~kl~~~y~~~~~~~~~~~~f~f---dG~~i----~~~~Tp~~l~med~D~Idv~   71 (72)
T d1wm3a_          23 PLSKLMKAYCERQGLSMRQIRFRF---DGQPI----NETDTPAQLEMEDEDTIDVF   71 (72)
T ss_dssp             CTHHHHHHHHHHHTCCTTTCEEEE---TTEEC----CTTCCTTTTTCCTTEEEEEE
T ss_pred             hHHHHHHHHHHHhCCCccceEEEE---CCEEc----CCCCCHHHcCCCCCCEEEEE
Confidence            456677777788999999999998   68764    45578999999999999874