Citrus Sinensis ID: 028501

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------21
Protein Sequence
MPHVLIDQDSNSDATIVQLSFGDRLGALIDTMNALKDLGLDVAKGTVNTEGSVKQTKFFITRLDTGRKVEDPDLLERIRLTIINNLLKYHPESSEQLAMGEAFGIKAPEKKLDVDIATHIHVKEDGPKRSLLYIETADRPGLLVEIMKIIADVNVDVESAEIDTEGLVAKDKFHVSYGGAALNSSLSQVLVNCLRYYLRRPETDIDSY
Secondary Structure (PSIPRED)
ccEEEEEEcccccEEEEEEEEcccccHHHHHHHHHHHccccEEEEEEEEccccEEEEEEEEEcccccccccHHHHHHHHHHHHHHHHccccccHHHHHHHccccccccccccccccccEEEEcccccccEEEEEEEEcccHHHHHHHHHHHHccEEEEEEEEEccccEEEEEEEEEcccccccHHHHHHHHHHHHHHccccccccccc
Secondary Structure Prediction (SSPRO)
ccEEEEccccccccEEEEEEccccHHHHHHHHHHHHHcccEEEEEEEEEccccEEEEEEEEEcccccccccHHHHHHHHHHHHHHHHHHccccHHHHHHccccccccccccEcEEEcEEEEEEccccccEEEEEEccccccHHHHHHHHHHHccEEEEEEEEEcccHHEEEEEEEEcccccccHHHHHHHHHHHHHHHcccccccccc
Coil and Loop (DISEMBL)
mphvlidqdsnsdatIVQLSFGDRLGALIDTMNALKDLGLDvakgtvntegsvkQTKFFITRldtgrkvedpdLLERIRLTIINNLlkyhpesseqlamgeafgikapekkldvDIATHihvkedgpkrslLYIETADRPGLLVEIMKIIADvnvdvesaeidteglvakdkfhvsyggaalnSSLSQVLVNCLRYYlrrpetdidsy
Flexible Loop (DISEMBL)
mphvlidqdsnsdaTIVQLSFGDRLGALIDTMNALKDLGLDVAkgtvntegsvkqtkffitrldtgrkvedpdllERIRLTIINNLLKYHPESSEQLAMGEAFGIKAPEKKLDVDIATHihvkedgpkrsllYIETADRPGLLVEIMKIIADVNVDVESAEIDTEGLVAKDKFHVSYGGaalnsslsQVLVNCLRYYlrrpetdidsy
Low Complexity Region (SEG)
MPHVLIDQDSNSDATIVQLSFGDRLGALIDTMNALKDLGLDVAKGTVNTEGSVKQTKFFITRLDTGRKVEDPDLLERIRLTIINNLLKYHPESSEQLAMGEAFGIKAPEKKLDVDIATHIHVKEDGPKRSLLYIETADRPGLLVEIMKIIADVNVDVESAEIDTEGLVAKDKFHVSYGGAALNSSLSQVLVNCLRYYLRRPETDIDSY
Disordered region (IsUnstruct)
*************ATIVQLSFGDRLGALIDTMNALKDLGLDVAKGTVNTEGSVKQTKFFITRLDTGRKVEDPDLLERIRLTIINNLLKYHP*****LAMGEAFGIKAPEKKLDVDIATHIHVKEDGPKRSLLYIETADRPGLLVEIMKIIADVNVDVESAEIDTEGLVAKDKFHVSYGGAALNSSLSQVLVNCLRYYLR*********
Disordered Region (DISOPRED)
MPHVLIDQDSNSDATIVQLSFGDRLGALIDTMNALKDLGLDVAKGTVNTEGSVKQTKFFITRLDTGRKVEDPDLLERIRLTIINNLLKYHPESSEQLAM********PEKKLDVDIATHIHVKEDGPKRSLLYIETADRPGLLVEIMKIIADVNVDVESAEIDTEGLVAKDKFHVSYGG*********VLVNCLRY************
Disordered Region (DISEMBL)
********DSNSDATIVQLSFGDRLGALIDTMNALKDLGLDVAKGTVNTEGSVKQTKFFITRLDTGRKVEDPDLLERIRLTIINNLLKYHPESSEQLAMGEAFGIKAPEKKLDVDIATHIHVKEDGPKRSLLYIETADRPGLLVEIMKIIADVNVDVESAEIDTEGLVAKDKFHVSYGGAALNSSLSQVLVNCLRYYLRRPETDIDSY
Disordered Region (DISPRO)
MPHVLIDQDSNSDATIVQLSFGDRLGALIDTMNALKDLGLDVAKGTVNTEGSVKQTKFFITRLDTGRKVEDPDLLERIRLTIINNLLKYHPESSEQLAMGEAFGIKAPEKKLDVDIATHIHVKEDGPKRSLLYIETADRPGLLVEIMKIIADVNVDVESAEIDTEGLVAKDKFHVSYGGAALNSSLSQVLVNCLRYYLRRP*******
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MPHVLIDQDSNSDATIVQLSFGDRLGALIDTMNALKDLGLDVAKGTVNTEGSVKQTKFFITRLDTGRKVEDPDLLERIRLTIINNLLKYHPESSEQLAMGEAFGIKAPEKKLDVDIATHIHVKEDGPKRSLLYIETADRPGLLVEIMKIIADVNVDVESAEIDTEGLVAKDKFHVSYGGAALNSSLSQVLVNCLRYYLRRPETDIDSY
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	208	2.2.26 [Sep-21-2011]
Q0J709	283	Unknown protein DS12 from	no	no	0.995	0.731	0.608	2e-70
P83643	283	Unknown protein DS12 from	N/A	no	0.995	0.731	0.608	2e-70
Q9AC53	940	[Protein-PII] uridylyltra	yes	no	0.740	0.163	0.288	3e-05
B8GWX0	940	[Protein-PII] uridylyltra	yes	no	0.740	0.163	0.288	3e-05
Q7NTY6	856	[Protein-PII] uridylyltra	yes	no	0.336	0.081	0.415	4e-05
Q3J5H6	930	[Protein-PII] uridylyltra	yes	no	0.783	0.175	0.273	0.0004
Q5LWE5	908	[Protein-PII] uridylyltra	yes	no	0.788	0.180	0.285	0.0004
Q5FPT6	949	[Protein-PII] uridylyltra	yes	no	0.403	0.088	0.305	0.0004
Q9RAE4	944	[Protein-PII] uridylyltra	N/A	no	0.230	0.050	0.408	0.0009

>sp|Q0J709|UP12_ORYSJ Unknown protein DS12 from 2D-PAGE of leaf, chloroplastic OS=Oryza sativa subsp. japonica GN=Os08g0242700 PE=2 SV=2

 Score =  265 bits (676), Expect = 2e-70,   Method: Compositional matrix adjust.
 Identities = 126/207 (60%), Positives = 163/207 (78%)

Query: 2   PHVLIDQDSNSDATIVQLSFGDRLGALIDTMNALKDLGLDVAKGTVNTEGSVKQTKFFIT 61
           P V+IDQDS+ DATIV+++ GDRLG L+DTMNALK+LGL+V K +V  + + K  K  IT
Sbjct: 77  PKVIIDQDSDPDATIVEITLGDRLGDLLDTMNALKNLGLNVVKASVCLDSTGKHIKLAIT 136

Query: 62  RLDTGRKVEDPDLLERIRLTIINNLLKYHPESSEQLAMGEAFGIKAPEKKLDVDIATHIH 121
           +L TGRK+ +P+LLE +RLTIINN+++YHPE+S QLA+G  FG + P + +DVDIATHI 
Sbjct: 137 KLSTGRKIGEPELLEAVRLTIINNMIQYHPEASSQLALGATFGPEPPTELVDVDIATHID 196

Query: 122 VKEDGPKRSLLYIETADRPGLLVEIMKIIADVNVDVESAEIDTEGLVAKDKFHVSYGGAA 181
           + +DGP RSLL +ETADRPGLLV+++KII D+N+ V+S E DTEGL+AK KFHVSY G  
Sbjct: 197 IYDDGPDRSLLVVETADRPGLLVDLVKIIDDINITVQSGEFDTEGLLAKAKFHVSYRGKP 256

Query: 182 LNSSLSQVLVNCLRYYLRRPETDIDSY 208
           L  +L QVL N LRY+LRRP T+  SY
Sbjct: 257 LIKALQQVLANSLRYFLRRPTTEEGSY 283

Oryza sativa subsp. japonica (taxid: 39947)

>sp|P83643|UP12_ORYSI Unknown protein DS12 from 2D-PAGE of leaf, chloroplastic OS=Oryza sativa subsp. indica GN=OsI_027381 PE=1 SV=2

 Score =  265 bits (676), Expect = 2e-70,   Method: Compositional matrix adjust.
 Identities = 126/207 (60%), Positives = 163/207 (78%)

Query: 2   PHVLIDQDSNSDATIVQLSFGDRLGALIDTMNALKDLGLDVAKGTVNTEGSVKQTKFFIT 61
           P V+IDQDS+ DATIV+++ GDRLG L+DTMNALK+LGL+V K +V  + + K  K  IT
Sbjct: 77  PKVIIDQDSDPDATIVEITLGDRLGDLLDTMNALKNLGLNVVKASVCLDSTGKHIKLAIT 136

Query: 62  RLDTGRKVEDPDLLERIRLTIINNLLKYHPESSEQLAMGEAFGIKAPEKKLDVDIATHIH 121
           +L TGRK+ +P+LLE +RLTIINN+++YHPE+S QLA+G  FG + P + +DVDIATHI 
Sbjct: 137 KLSTGRKIGEPELLEAVRLTIINNMIQYHPEASSQLALGATFGPEPPTELVDVDIATHID 196

Query: 122 VKEDGPKRSLLYIETADRPGLLVEIMKIIADVNVDVESAEIDTEGLVAKDKFHVSYGGAA 181
           + +DGP RSLL +ETADRPGLLV+++KII D+N+ V+S E DTEGL+AK KFHVSY G  
Sbjct: 197 IYDDGPDRSLLVVETADRPGLLVDLVKIIDDINITVQSGEFDTEGLLAKAKFHVSYRGKP 256

Query: 182 LNSSLSQVLVNCLRYYLRRPETDIDSY 208
           L  +L QVL N LRY+LRRP T+  SY
Sbjct: 257 LIKALQQVLANSLRYFLRRPTTEEGSY 283

Oryza sativa subsp. indica (taxid: 39946)

>sp|Q9AC53|GLND_CAUCR [Protein-PII] uridylyltransferase OS=Caulobacter crescentus (strain ATCC 19089 / CB15) GN=glnD PE=3 SV=1

 Score = 48.9 bits (115), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 49/170 (28%), Positives = 70/170 (41%), Gaps = 16/170 (9%)

Query: 12  SDATIVQLSFGDRLGALIDTMNALKDLGLDVAKGTVNTEGSVKQTKFFITRLDTGRK--V 69
           S+A  V ++  DR G   D   A+  LG +V    V T    +    F  +  TG     
Sbjct: 733 SNAAEVVIAAKDRRGLFADLALAISSLGGNVVGARVFTSRQGQALDVFYVQDVTGAPFGC 792

Query: 70  EDPDLLERIRLTI----INNLLKYHPESSEQLAMGEAFGIKAPEKKLDVDIATHIHVKED 125
           E+P  L R+   +      + L   P    +     AF I AP   +D D +    V E 
Sbjct: 793 ENPRALRRLADALEAAGKGDALAVEPRRGSEQTRAAAFAI-APSVTIDNDASNDATVVEA 851

Query: 126 GPKRSLLYIETADRPGLLVEIMKIIADVNVDVESAEIDTEGLVAKDKFHV 175
             +         DRPGLL  + K +AD  + ++SA ID  G  A D F+V
Sbjct: 852 SGR---------DRPGLLHALAKTLADSALSIQSAHIDGYGERAVDAFYV 892

Modifies, by uridylylation or deuridylylation the PII (GlnB) regulatory protein.

Caulobacter crescentus (strain ATCC 19089 / CB15) (taxid: 190650)

EC: 2

EC: .

EC: 7

EC: .

EC: 7

EC: .

EC: 5

EC: 9

>sp|B8GWX0|GLND_CAUCN [Protein-PII] uridylyltransferase OS=Caulobacter crescentus (strain NA1000 / CB15N) GN=glnD PE=3 SV=1

 Score = 48.9 bits (115), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 49/170 (28%), Positives = 70/170 (41%), Gaps = 16/170 (9%)

Query: 12  SDATIVQLSFGDRLGALIDTMNALKDLGLDVAKGTVNTEGSVKQTKFFITRLDTGRK--V 69
           S+A  V ++  DR G   D   A+  LG +V    V T    +    F  +  TG     
Sbjct: 733 SNAAEVVIAAKDRRGLFADLALAISSLGGNVVGARVFTSRQGQALDVFYVQDVTGAPFGC 792

Query: 70  EDPDLLERIRLTI----INNLLKYHPESSEQLAMGEAFGIKAPEKKLDVDIATHIHVKED 125
           E+P  L R+   +      + L   P    +     AF I AP   +D D +    V E 
Sbjct: 793 ENPRALRRLADALEAAGKGDALAVEPRRGSEQTRAAAFAI-APSVTIDNDASNDATVVEA 851

Query: 126 GPKRSLLYIETADRPGLLVEIMKIIADVNVDVESAEIDTEGLVAKDKFHV 175
             +         DRPGLL  + K +AD  + ++SA ID  G  A D F+V
Sbjct: 852 SGR---------DRPGLLHALAKTLADSALSIQSAHIDGYGERAVDAFYV 892

Modifies, by uridylylation or deuridylylation the PII (GlnB) regulatory protein.

Caulobacter crescentus (strain NA1000 / CB15N) (taxid: 565050)

EC: 2

EC: .

EC: 7

EC: .

EC: 7

EC: .

EC: 5

EC: 9

>sp|Q7NTY6|GLND_CHRVO [Protein-PII] uridylyltransferase OS=Chromobacterium violaceum (strain ATCC 12472 / DSM 30191 / JCM 1249 / NBRC 12614 / NCIMB 9131 / NCTC 9757) GN=glnD PE=3 SV=1

 Score = 48.5 bits (114), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 32/77 (41%), Positives = 42/77 (54%), Gaps = 7/77 (9%)

Query: 124 EDGPKRSLLYIETADRPGLLVEIMKIIADVNVDVESAEIDTEGLVAKDKFHVSYGGAALN 183
           +D     +L I   DRPGLL  I K++AD  ++V SA+I T G  A+D F VS  GAAL 
Sbjct: 781 DDKDSDFILSIVAGDRPGLLARIAKVLADYRLNVRSAKIMTLGGRAEDSFQVS--GAALK 838

Query: 184 S-----SLSQVLVNCLR 195
                 +L   L+  LR
Sbjct: 839 DDKTALALEAALITALR 855

Modifies, by uridylylation or deuridylylation the PII (GlnB) regulatory protein.

Chromobacterium violaceum (strain ATCC 12472 / DSM 30191 / JCM 1249 / NBRC 12614 / NCIMB 9131 / NCTC 9757) (taxid: 243365)

EC: 2

EC: .

EC: 7

EC: .

EC: 7

EC: .

EC: 5

EC: 9

>sp|Q3J5H6|GLND_RHOS4 [Protein-PII] uridylyltransferase OS=Rhodobacter sphaeroides (strain ATCC 17023 / 2.4.1 / NCIB 8253 / DSM 158) GN=glnD PE=3 SV=1

 Score = 45.1 bits (105), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 47/172 (27%), Positives = 73/172 (42%), Gaps = 9/172 (5%)

Query: 6   IDQDSNSDATIVQLSFGDRLGALIDTMNALKDLGLDVAKGTVNTEGSVKQTKFFITRLDT 65
           +D D + DAT    +  D  G       AL  +G +V      T      T  F  +   
Sbjct: 732 LDPDPDRDATRACFALADHPGIFSRLAGALALVGANVVDARTYTTKDGYATAVFWIQDSE 791

Query: 66  GRKVEDPDLLERIRLT-IINNLLKYHPESSEQLAMGEAFGIKAPEKKLDVDIATHIHVKE 124
           G   E   L    RLT +I+  LK    + E L   +    K  +++      THI    
Sbjct: 792 GSPYEISRL---PRLTSMIDKTLKGEVVAREALKDRD----KLKKREAQFRFPTHIAFDN 844

Query: 125 DGPK-RSLLYIETADRPGLLVEIMKIIADVNVDVESAEIDTEGLVAKDKFHV 175
           +G    +++ ++T DRPGLL ++ + +A  N+ + SA I T G    D F+V
Sbjct: 845 EGSDIYTIIEVDTRDRPGLLYDLTRTLAANNIYIASAVIATYGAQVVDSFYV 896

Modifies, by uridylylation or deuridylylation the PII (GlnB) regulatory protein.

Rhodobacter sphaeroides (strain ATCC 17023 / 2.4.1 / NCIB 8253 / DSM 158) (taxid: 272943)

EC: 2

EC: .

EC: 7

EC: .

EC: 7

EC: .

EC: 5

EC: 9

>sp|Q5LWE5|GLND_RUEPO [Protein-PII] uridylyltransferase OS=Ruegeria pomeroyi (strain ATCC 700808 / DSM 15171 / DSS-3) GN=glnD PE=3 SV=1

 Score = 45.1 bits (105), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 50/175 (28%), Positives = 77/175 (44%), Gaps = 11/175 (6%)

Query: 4   VLIDQDSNSDATIVQLSFGDRLGALIDTMNALKDLGLDV--AKGTVNTEGSVKQTKFFIT 61
           + +D D + DAT    +  D  G       AL  +G +V  A+     +G V  T  F  
Sbjct: 707 IRLDPDEDRDATRACFAMADHPGIFSRMAGALALVGANVVDARSYTTKDGYV--TDAFWI 764

Query: 62  RLDTGRKVEDPDLLERIRLTIINNLLKYHPESSEQLAMGEAFGIKAPEKKLDVDIATHIH 121
           +   G   E   L  R+   I+  L     E   + A+     IK  EK  +V   THI 
Sbjct: 765 QDAEGHPYEAARL-PRLSQMILKTL---KGEVVARDALKSRDKIKKREKAFNV--PTHIT 818

Query: 122 VKEDGPK-RSLLYIETADRPGLLVEIMKIIADVNVDVESAEIDTEGLVAKDKFHV 175
              +G    +++ ++T DRPGLL ++ + +A  NV + +A I T G    D F+V
Sbjct: 819 FDNEGSDIYTIIEVDTRDRPGLLYDLARALAAANVYIANAVIATYGEQVVDSFYV 873

Modifies, by uridylylation or deuridylylation the PII (GlnB) regulatory protein.

Silicibacter pomeroyi (strain ATCC 700808 / DSM 15171 / DSS-3) (taxid: 246200)

EC: 2

EC: .

EC: 7

EC: .

EC: 7

EC: .

EC: 5

EC: 9

>sp|Q5FPT6|GLND_GLUOX [Protein-PII] uridylyltransferase OS=Gluconobacter oxydans (strain 621H) GN=glnD PE=3 SV=1

 Score = 45.1 bits (105), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 26/85 (30%), Positives = 45/85 (52%), Gaps = 1/85 (1%)

Query: 2   PHVLIDQDSNSDATIVQLSFGDRLGALIDTMNALKDLGLDVAKGTVNTEGSVKQTKFFIT 61
           P V+ID  ++   T+++++  DR G L D  +AL    L ++   + T G ++    F  
Sbjct: 856 PRVVIDNTASDRHTVIEVNGRDRPGLLHDVTSALSSASLQISSAHITTYG-MRAVDVFYV 914

Query: 62  RLDTGRKVEDPDLLERIRLTIINNL 86
           R   G K+ DP  L R+R T++ +L
Sbjct: 915 RDLLGMKITDPVRLARLRETLLASL 939

Modifies, by uridylylation or deuridylylation the PII (GlnB) regulatory protein.

Gluconobacter oxydans (strain 621H) (taxid: 290633)

EC: 2

EC: .

EC: 7

EC: .

EC: 7

EC: .

EC: 5

EC: 9

>sp|Q9RAE4|GLND_RHILV [Protein-PII] uridylyltransferase OS=Rhizobium leguminosarum bv. viciae GN=glnD PE=3 SV=2

 Score = 43.9 bits (102), Expect = 9e-04,   Method: Compositional matrix adjust.
 Identities = 20/49 (40%), Positives = 34/49 (69%)

Query: 128 KRSLLYIETADRPGLLVEIMKIIADVNVDVESAEIDTEGLVAKDKFHVS 176
           K +++ +E  DRPGLL EI  +++D+++D++SA I T G    D F+V+
Sbjct: 836 KFTVIEVECLDRPGLLSEITAVLSDLSLDIQSARITTFGEKVIDTFYVT 884

Modifies, by uridylylation or deuridylylation the PII (GlnB) regulatory protein.

Rhizobium leguminosarum bv. viciae (taxid: 387)

EC: 2

EC: .

EC: 7

EC: .

EC: 7

EC: .

EC: 5

EC: 9

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	208
224110178	217	predicted protein [Populus trichocarpa]	1.0	0.958	0.927	1e-106
224097618	218	predicted protein [Populus trichocarpa]	1.0	0.954	0.913	1e-106
255560331	214	amino acid binding protein, putative [Ri	1.0	0.971	0.903	1e-106
449494163	283	PREDICTED: unknown protein DS12 from 2D-	1.0	0.734	0.879	1e-105
449446279	287	PREDICTED: unknown protein DS12 from 2D-	1.0	0.724	0.879	1e-105
388495334	282	unknown [Lotus japonicus]	1.0	0.737	0.889	1e-104
21592963	301	unknown [Arabidopsis thaliana]	1.0	0.691	0.860	1e-101
15238305	301	ACT domain-containing protein [Arabidops	1.0	0.691	0.860	1e-101
356536361	283	PREDICTED: unknown protein DS12 from 2D-	1.0	0.734	0.875	1e-101
356575488	282	PREDICTED: unknown protein DS12 from 2D-	1.0	0.737	0.875	1e-101

>gi|224110178|ref|XP_002315438.1| predicted protein [Populus trichocarpa] gi|222864478|gb|EEF01609.1| predicted protein [Populus trichocarpa]

 Score =  389 bits (999), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 193/208 (92%), Positives = 200/208 (96%)

Query: 1   MPHVLIDQDSNSDATIVQLSFGDRLGALIDTMNALKDLGLDVAKGTVNTEGSVKQTKFFI 60
           MP VLIDQDS+SDATIVQLSFGDRLGALIDTMNALK LGLDVAKGTV T+G VKQTKFFI
Sbjct: 10  MPVVLIDQDSDSDATIVQLSFGDRLGALIDTMNALKHLGLDVAKGTVLTDGPVKQTKFFI 69

Query: 61  TRLDTGRKVEDPDLLERIRLTIINNLLKYHPESSEQLAMGEAFGIKAPEKKLDVDIATHI 120
           TRLDTGRKVEDPD+LERIRLTIINNLLKYHPESSE+LAMGEAFGIKAPEKKLDVDI TH+
Sbjct: 70  TRLDTGRKVEDPDMLERIRLTIINNLLKYHPESSERLAMGEAFGIKAPEKKLDVDITTHV 129

Query: 121 HVKEDGPKRSLLYIETADRPGLLVEIMKIIADVNVDVESAEIDTEGLVAKDKFHVSYGGA 180
           HVKEDGPKRSLL IETADRPGLLVEI+KIIADVN+DVESAEIDTEGLVAKDKFHVSY GA
Sbjct: 130 HVKEDGPKRSLLCIETADRPGLLVEIIKIIADVNIDVESAEIDTEGLVAKDKFHVSYRGA 189

Query: 181 ALNSSLSQVLVNCLRYYLRRPETDIDSY 208
           AL SSLSQVLVNCLRYYLRRPETDIDSY
Sbjct: 190 ALTSSLSQVLVNCLRYYLRRPETDIDSY 217

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224097618|ref|XP_002311013.1| predicted protein [Populus trichocarpa] gi|222850833|gb|EEE88380.1| predicted protein [Populus trichocarpa]

 Score =  389 bits (998), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 190/208 (91%), Positives = 202/208 (97%)

Query: 1   MPHVLIDQDSNSDATIVQLSFGDRLGALIDTMNALKDLGLDVAKGTVNTEGSVKQTKFFI 60
           +P VLIDQDS+S++TIVQLSFGDRLGALIDTMNALKDLGLDVAKGTV TEG VKQTKFFI
Sbjct: 11  IPVVLIDQDSDSESTIVQLSFGDRLGALIDTMNALKDLGLDVAKGTVLTEGPVKQTKFFI 70

Query: 61  TRLDTGRKVEDPDLLERIRLTIINNLLKYHPESSEQLAMGEAFGIKAPEKKLDVDIATHI 120
           TRLD+GRKVEDPD+LERIRLTIINNLLKYHPESSE+LAMGEAFGIKAPEKKLDVDI TH+
Sbjct: 71  TRLDSGRKVEDPDMLERIRLTIINNLLKYHPESSERLAMGEAFGIKAPEKKLDVDITTHV 130

Query: 121 HVKEDGPKRSLLYIETADRPGLLVEIMKIIADVNVDVESAEIDTEGLVAKDKFHVSYGGA 180
           HVKEDGPKRSLL +ETADRPGLLVEI+KIIADVN+DVESAEIDTEGLVAKDKFHVSYGGA
Sbjct: 131 HVKEDGPKRSLLCVETADRPGLLVEIIKIIADVNIDVESAEIDTEGLVAKDKFHVSYGGA 190

Query: 181 ALNSSLSQVLVNCLRYYLRRPETDIDSY 208
           ALNSSLSQVLVNCLRYYLRRPETD +SY
Sbjct: 191 ALNSSLSQVLVNCLRYYLRRPETDTESY 218

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255560331|ref|XP_002521182.1| amino acid binding protein, putative [Ricinus communis] gi|223539629|gb|EEF41213.1| amino acid binding protein, putative [Ricinus communis]

 Score =  388 bits (996), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 188/208 (90%), Positives = 202/208 (97%)

Query: 1   MPHVLIDQDSNSDATIVQLSFGDRLGALIDTMNALKDLGLDVAKGTVNTEGSVKQTKFFI 60
           MP +LIDQDS+SDAT VQ+SFGDRLGALIDTM ALKDLGLDVAKG+V TEGSVKQ KFFI
Sbjct: 7   MPVLLIDQDSDSDATSVQVSFGDRLGALIDTMKALKDLGLDVAKGSVLTEGSVKQIKFFI 66

Query: 61  TRLDTGRKVEDPDLLERIRLTIINNLLKYHPESSEQLAMGEAFGIKAPEKKLDVDIATHI 120
           TRLD+GRKVEDPD+LERIRLTIINNLLKYHPESSEQLAMGEAFGIKAPE+KLDVDIATHI
Sbjct: 67  TRLDSGRKVEDPDMLERIRLTIINNLLKYHPESSEQLAMGEAFGIKAPERKLDVDIATHI 126

Query: 121 HVKEDGPKRSLLYIETADRPGLLVEIMKIIADVNVDVESAEIDTEGLVAKDKFHVSYGGA 180
           HVK+DGPKRSLLYIETADRPGLLVE++KI+AD+NVDVESAEIDTEGLVAKDKFHVSY GA
Sbjct: 127 HVKDDGPKRSLLYIETADRPGLLVEMIKIMADINVDVESAEIDTEGLVAKDKFHVSYRGA 186

Query: 181 ALNSSLSQVLVNCLRYYLRRPETDIDSY 208
           ALNSS+SQVLVNCLRYYLRRPETD+DSY
Sbjct: 187 ALNSSMSQVLVNCLRYYLRRPETDVDSY 214

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449494163|ref|XP_004159466.1| PREDICTED: unknown protein DS12 from 2D-PAGE of leaf, chloroplastic-like [Cucumis sativus]

 Score =  385 bits (990), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 183/208 (87%), Positives = 203/208 (97%)

Query: 1   MPHVLIDQDSNSDATIVQLSFGDRLGALIDTMNALKDLGLDVAKGTVNTEGSVKQTKFFI 60
           MP VLIDQDS+S+ATIV++SFGDRLGALIDTM ALKDLGLDVAKGTV+TEGSVKQTKF++
Sbjct: 76  MPIVLIDQDSDSNATIVEVSFGDRLGALIDTMRALKDLGLDVAKGTVSTEGSVKQTKFYL 135

Query: 61  TRLDTGRKVEDPDLLERIRLTIINNLLKYHPESSEQLAMGEAFGIKAPEKKLDVDIATHI 120
           TRLD+GRKVEDPDLLE IRLTIINNLLKYHPESS+QLAMGEAFGI+ PEKKLDVDIATH+
Sbjct: 136 TRLDSGRKVEDPDLLESIRLTIINNLLKYHPESSQQLAMGEAFGIQPPEKKLDVDIATHV 195

Query: 121 HVKEDGPKRSLLYIETADRPGLLVEIMKIIADVNVDVESAEIDTEGLVAKDKFHVSYGGA 180
           HVK DGPKRSLLY+ETADRPGLL+E++K++AD+N+DVESAEIDTEGLVAKDKFHVSYGGA
Sbjct: 196 HVKADGPKRSLLYLETADRPGLLLEVIKMLADINIDVESAEIDTEGLVAKDKFHVSYGGA 255

Query: 181 ALNSSLSQVLVNCLRYYLRRPETDIDSY 208
           ALNSSLSQV+VNCLRYYLRRPETDIDSY
Sbjct: 256 ALNSSLSQVVVNCLRYYLRRPETDIDSY 283

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449446279|ref|XP_004140899.1| PREDICTED: unknown protein DS12 from 2D-PAGE of leaf, chloroplastic-like [Cucumis sativus]

 Score =  385 bits (989), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 183/208 (87%), Positives = 203/208 (97%)

Query: 1   MPHVLIDQDSNSDATIVQLSFGDRLGALIDTMNALKDLGLDVAKGTVNTEGSVKQTKFFI 60
           MP VLIDQDS+S+ATIV++SFGDRLGALIDTM ALKDLGLDVAKGTV+TEGSVKQTKF++
Sbjct: 80  MPIVLIDQDSDSNATIVEVSFGDRLGALIDTMRALKDLGLDVAKGTVSTEGSVKQTKFYL 139

Query: 61  TRLDTGRKVEDPDLLERIRLTIINNLLKYHPESSEQLAMGEAFGIKAPEKKLDVDIATHI 120
           TRLD+GRKVEDPDLLE IRLTIINNLLKYHPESS+QLAMGEAFGI+ PEKKLDVDIATH+
Sbjct: 140 TRLDSGRKVEDPDLLESIRLTIINNLLKYHPESSQQLAMGEAFGIQPPEKKLDVDIATHV 199

Query: 121 HVKEDGPKRSLLYIETADRPGLLVEIMKIIADVNVDVESAEIDTEGLVAKDKFHVSYGGA 180
           HVK DGPKRSLLY+ETADRPGLL+E++K++AD+N+DVESAEIDTEGLVAKDKFHVSYGGA
Sbjct: 200 HVKADGPKRSLLYLETADRPGLLLEVIKMLADINIDVESAEIDTEGLVAKDKFHVSYGGA 259

Query: 181 ALNSSLSQVLVNCLRYYLRRPETDIDSY 208
           ALNSSLSQV+VNCLRYYLRRPETDIDSY
Sbjct: 260 ALNSSLSQVVVNCLRYYLRRPETDIDSY 287

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388495334|gb|AFK35733.1| unknown [Lotus japonicus]

 Score =  382 bits (982), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 185/208 (88%), Positives = 199/208 (95%)

Query: 1   MPHVLIDQDSNSDATIVQLSFGDRLGALIDTMNALKDLGLDVAKGTVNTEGSVKQTKFFI 60
           MP VLIDQDS+S+ATIVQLSFGDRLGALIDTM ALKDLGLDV+KGTV+TEGSVKQTKFFI
Sbjct: 75  MPMVLIDQDSDSEATIVQLSFGDRLGALIDTMKALKDLGLDVSKGTVSTEGSVKQTKFFI 134

Query: 61  TRLDTGRKVEDPDLLERIRLTIINNLLKYHPESSEQLAMGEAFGIKAPEKKLDVDIATHI 120
           T+ +TGRKVEDPD+LERIRLTII+NLLKYHPESSEQLAMGE FGIKAP KKLD+D AT I
Sbjct: 135 TQSNTGRKVEDPDMLERIRLTIISNLLKYHPESSEQLAMGEVFGIKAPVKKLDLDFATRI 194

Query: 121 HVKEDGPKRSLLYIETADRPGLLVEIMKIIADVNVDVESAEIDTEGLVAKDKFHVSYGGA 180
            VKEDGPKRSLLYIETADRPGLLVEI+K+IADVN+DVESAEIDTEGL+AKDKFHVSYGGA
Sbjct: 195 QVKEDGPKRSLLYIETADRPGLLVEIIKVIADVNIDVESAEIDTEGLIAKDKFHVSYGGA 254

Query: 181 ALNSSLSQVLVNCLRYYLRRPETDIDSY 208
           ALNSS+SQVLVNCLRYYLR PETDIDSY
Sbjct: 255 ALNSSMSQVLVNCLRYYLRTPETDIDSY 282

Source: Lotus japonicus

Species: Lotus japonicus

Genus: Lotus

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|21592963|gb|AAM64912.1| unknown [Arabidopsis thaliana]

 Score =  373 bits (957), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 179/208 (86%), Positives = 196/208 (94%)

Query: 1   MPHVLIDQDSNSDATIVQLSFGDRLGALIDTMNALKDLGLDVAKGTVNTEGSVKQTKFFI 60
           MP V+IDQD++ +ATIVQLSFG+RLGALIDTM ALKDLGLDV KGTV+TEGS+KQTKF I
Sbjct: 94  MPMVMIDQDADPEATIVQLSFGNRLGALIDTMRALKDLGLDVIKGTVSTEGSIKQTKFSI 153

Query: 61  TRLDTGRKVEDPDLLERIRLTIINNLLKYHPESSEQLAMGEAFGIKAPEKKLDVDIATHI 120
           T+ DTGRKVEDPDLLE+IRLTIINNLLKYHPE SEQLAMGE FGIKAPEKK+DVDIATHI
Sbjct: 154 TKRDTGRKVEDPDLLEQIRLTIINNLLKYHPECSEQLAMGETFGIKAPEKKIDVDIATHI 213

Query: 121 HVKEDGPKRSLLYIETADRPGLLVEIMKIIADVNVDVESAEIDTEGLVAKDKFHVSYGGA 180
           HVKEDGPKRSLL IETADRPGL+VE++K++ADVN+DVESAEIDTEGLVAKDKFHVSY G 
Sbjct: 214 HVKEDGPKRSLLVIETADRPGLVVEMIKVMADVNIDVESAEIDTEGLVAKDKFHVSYQGQ 273

Query: 181 ALNSSLSQVLVNCLRYYLRRPETDIDSY 208
           ALN SLSQVLVNCLRY+LRRPETDIDSY
Sbjct: 274 ALNRSLSQVLVNCLRYFLRRPETDIDSY 301

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|15238305|ref|NP_196094.1| ACT domain-containing protein [Arabidopsis thaliana] gi|7413536|emb|CAB86016.1| putative protein [Arabidopsis thaliana] gi|9758449|dbj|BAB08978.1| unnamed protein product [Arabidopsis thaliana] gi|18252933|gb|AAL62393.1| putative protein [Arabidopsis thaliana] gi|21389645|gb|AAM48021.1| putative protein [Arabidopsis thaliana] gi|332003394|gb|AED90777.1| ACT domain-containing protein [Arabidopsis thaliana] gi|347949480|gb|AEP31953.1| ACT domain-containing protein [Arabidopsis thaliana]

 Score =  373 bits (957), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 179/208 (86%), Positives = 196/208 (94%)

Query: 1   MPHVLIDQDSNSDATIVQLSFGDRLGALIDTMNALKDLGLDVAKGTVNTEGSVKQTKFFI 60
           MP V+IDQD++ +ATIVQLSFG+RLGALIDTM ALKDLGLDV KGTV+TEGS+KQTKF I
Sbjct: 94  MPMVMIDQDADPEATIVQLSFGNRLGALIDTMRALKDLGLDVIKGTVSTEGSIKQTKFSI 153

Query: 61  TRLDTGRKVEDPDLLERIRLTIINNLLKYHPESSEQLAMGEAFGIKAPEKKLDVDIATHI 120
           T+ DTGRKVEDPDLLE+IRLTIINNLLKYHPE SEQLAMGE FGIKAPEKK+DVDIATHI
Sbjct: 154 TKRDTGRKVEDPDLLEQIRLTIINNLLKYHPECSEQLAMGETFGIKAPEKKIDVDIATHI 213

Query: 121 HVKEDGPKRSLLYIETADRPGLLVEIMKIIADVNVDVESAEIDTEGLVAKDKFHVSYGGA 180
           HVKEDGPKRSLL IETADRPGL+VE++K++ADVN+DVESAEIDTEGLVAKDKFHVSY G 
Sbjct: 214 HVKEDGPKRSLLVIETADRPGLVVEMIKVMADVNIDVESAEIDTEGLVAKDKFHVSYQGQ 273

Query: 181 ALNSSLSQVLVNCLRYYLRRPETDIDSY 208
           ALN SLSQVLVNCLRY+LRRPETDIDSY
Sbjct: 274 ALNRSLSQVLVNCLRYFLRRPETDIDSY 301

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356536361|ref|XP_003536707.1| PREDICTED: unknown protein DS12 from 2D-PAGE of leaf, chloroplastic-like [Glycine max]

 Score =  372 bits (955), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 182/208 (87%), Positives = 196/208 (94%)

Query: 1   MPHVLIDQDSNSDATIVQLSFGDRLGALIDTMNALKDLGLDVAKGTVNTEGSVKQTKFFI 60
           MP VLIDQ+S+S+ATIVQLSFGDRLGAL+DTM ALKDLGLDV+KGTV+TEG VKQTKFFI
Sbjct: 76  MPIVLIDQESDSEATIVQLSFGDRLGALLDTMKALKDLGLDVSKGTVSTEGLVKQTKFFI 135

Query: 61  TRLDTGRKVEDPDLLERIRLTIINNLLKYHPESSEQLAMGEAFGIKAPEKKLDVDIATHI 120
           T+ DTGRKVEDPD+LERIRLTIINNLLKYHPESSE LAMGE FGIKAP+KKLD DI T I
Sbjct: 136 TQSDTGRKVEDPDMLERIRLTIINNLLKYHPESSELLAMGEVFGIKAPKKKLDDDIKTRI 195

Query: 121 HVKEDGPKRSLLYIETADRPGLLVEIMKIIADVNVDVESAEIDTEGLVAKDKFHVSYGGA 180
            VKEDGPKRSLLYIETADRPGLLVEI+K+IADVN+DVESAEIDTEGLVAKD FHVSYGGA
Sbjct: 196 QVKEDGPKRSLLYIETADRPGLLVEIIKVIADVNIDVESAEIDTEGLVAKDTFHVSYGGA 255

Query: 181 ALNSSLSQVLVNCLRYYLRRPETDIDSY 208
           ALNSS++QVLVNCLRYYLR PETDIDSY
Sbjct: 256 ALNSSMAQVLVNCLRYYLRTPETDIDSY 283

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356575488|ref|XP_003555872.1| PREDICTED: unknown protein DS12 from 2D-PAGE of leaf, chloroplastic-like [Glycine max]

 Score =  371 bits (953), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 182/208 (87%), Positives = 196/208 (94%)

Query: 1   MPHVLIDQDSNSDATIVQLSFGDRLGALIDTMNALKDLGLDVAKGTVNTEGSVKQTKFFI 60
           MP VLIDQ+S+S+ATIVQLSFG+RLGAL+DTM ALKDLGLDV+KGTV+TEG VKQTKFFI
Sbjct: 75  MPIVLIDQESDSEATIVQLSFGNRLGALLDTMKALKDLGLDVSKGTVSTEGLVKQTKFFI 134

Query: 61  TRLDTGRKVEDPDLLERIRLTIINNLLKYHPESSEQLAMGEAFGIKAPEKKLDVDIATHI 120
           T+ DTGRKVEDPD+LERIRLTIINNLLKYHPESSE LAMGE FGIKAP+KKLD DI T I
Sbjct: 135 TQSDTGRKVEDPDMLERIRLTIINNLLKYHPESSELLAMGEVFGIKAPKKKLDDDIKTRI 194

Query: 121 HVKEDGPKRSLLYIETADRPGLLVEIMKIIADVNVDVESAEIDTEGLVAKDKFHVSYGGA 180
            VKEDGPKRSLLYIETADRPGLLVEI+K+IADVN+DVESAEIDTEGLVAKD FHVSYGGA
Sbjct: 195 QVKEDGPKRSLLYIETADRPGLLVEIIKVIADVNIDVESAEIDTEGLVAKDTFHVSYGGA 254

Query: 181 ALNSSLSQVLVNCLRYYLRRPETDIDSY 208
           ALNSS+SQVLVNCLRYYLR PETDIDSY
Sbjct: 255 ALNSSMSQVLVNCLRYYLRTPETDIDSY 282

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	208
TAIR|locus:2175458	301	ACR12 "ACT domain repeats 12"	1.0	0.691	0.860	3e-92
TAIR|locus:2015616	290	ACR11 "ACT domain repeats 11"	0.995	0.713	0.661	1.4e-69
TAIR|locus:2044289	456	ACR5 "ACT domain repeat 5" [Ar	0.384	0.175	0.296	1.3e-09
TAIR|locus:2033223	455	ACR4 "ACT domain repeat 4" [Ar	0.384	0.175	0.308	1.1e-08
TAIR|locus:2132609	449	ACR7 "ACT domain repeat 7" [Ar	0.389	0.180	0.268	6.7e-08
TAIR|locus:2078678	433	ACR6 "ACT domain repeat 6" [Ar	0.399	0.191	0.285	1.5e-07
TAIR|locus:2034630	441	ACR8 "AT1G12420" [Arabidopsis	0.384	0.181	0.333	4.2e-07
TAIR|locus:2152094	477	ACR1 "ACT domain repeat 1" [Ar	0.399	0.174	0.273	1e-06
TAIR|locus:2025317	453	ACR3 "ACT domain repeat 3" [Ar	0.533	0.245	0.243	3.3e-06
TIGR_CMR|SPO_0397	908	SPO_0397 "protein-P-II uridyly	0.788	0.180	0.285	4.6e-05

TAIR|locus:2175458 ACR12 "ACT domain repeats 12" [Arabidopsis thaliana (taxid:3702)]

 Score = 919 (328.6 bits), Expect = 3.0e-92, P = 3.0e-92
 Identities = 179/208 (86%), Positives = 196/208 (94%)

Query:     1 MPHVLIDQDSNSDATIVQLSFGDRLGALIDTMNALKDLGLDVAKGTVNTEGSVKQTKFFI 60
             MP V+IDQD++ +ATIVQLSFG+RLGALIDTM ALKDLGLDV KGTV+TEGS+KQTKF I
Sbjct:    94 MPMVMIDQDADPEATIVQLSFGNRLGALIDTMRALKDLGLDVIKGTVSTEGSIKQTKFSI 153

Query:    61 TRLDTGRKVEDPDLLERIRLTIINNLLKYHPESSEQLAMGEAFGIKAPEKKLDVDIATHI 120
             T+ DTGRKVEDPDLLE+IRLTIINNLLKYHPE SEQLAMGE FGIKAPEKK+DVDIATHI
Sbjct:   154 TKRDTGRKVEDPDLLEQIRLTIINNLLKYHPECSEQLAMGETFGIKAPEKKIDVDIATHI 213

Query:   121 HVKEDGPKRSLLYIETADRPGLLVEIMKIIADVNVDVESAEIDTEGLVAKDKFHVSYGGA 180
             HVKEDGPKRSLL IETADRPGL+VE++K++ADVN+DVESAEIDTEGLVAKDKFHVSY G 
Sbjct:   214 HVKEDGPKRSLLVIETADRPGLVVEMIKVMADVNIDVESAEIDTEGLVAKDKFHVSYQGQ 273

Query:   181 ALNSSLSQVLVNCLRYYLRRPETDIDSY 208
             ALN SLSQVLVNCLRY+LRRPETDIDSY
Sbjct:   274 ALNRSLSQVLVNCLRYFLRRPETDIDSY 301

GO:0008152 "metabolic process" evidence=IEA

GO:0009507 "chloroplast" evidence=ISM;IDA

GO:0016597 "amino acid binding" evidence=IEA

GO:0009535 "chloroplast thylakoid membrane" evidence=IDA

GO:0009570 "chloroplast stroma" evidence=IDA

GO:0019408 "dolichol biosynthetic process" evidence=RCA

TAIR|locus:2015616 ACR11 "ACT domain repeats 11" [Arabidopsis thaliana (taxid:3702)]

 Score = 705 (253.2 bits), Expect = 1.4e-69, P = 1.4e-69
 Identities = 137/207 (66%), Positives = 169/207 (81%)

Query:     2 PHVLIDQDSNSDATIVQLSFGDRLGALIDTMNALKDLGLDVAKGTVNTEGSVKQTKFFIT 61
             P V+IDQDS+ DAT+++++FGDRLGAL+DTMNALK+LGL+V K  V  + S K  KF IT
Sbjct:    84 PVVIIDQDSDPDATVLEVTFGDRLGALLDTMNALKNLGLNVVKANVYLDSSGKHNKFAIT 143

Query:    62 RLDTGRKVEDPDLLERIRLTIINNLLKYHPESSEQLAMGEAFGIKAPEKKLDVDIATHIH 121
             R D+GRKVEDP+LLE IRLT+INNLL++HPESS QLAMG AFG+  P + +DVDIATHI 
Sbjct:   144 RADSGRKVEDPELLEAIRLTVINNLLEFHPESSSQLAMGAAFGVLPPTEPIDVDIATHIT 203

Query:   122 VKEDGPKRSLLYIETADRPGLLVEIMKIIADVNVDVESAEIDTEGLVAKDKFHVSYGGAA 181
             +++DGP RSLL+IE+ADRPGLLVE++KII+D++V VES E DTEGL+AK KFHVSY   A
Sbjct:   204 IEDDGPDRSLLFIESADRPGLLVELVKIISDISVAVESGEFDTEGLLAKVKFHVSYRNKA 263

Query:   182 LNSSLSQVLVNCLRYYLRRPETDIDSY 208
             L   L QVL N LRY+LRRP TD  S+
Sbjct:   264 LIKPLQQVLANSLRYFLRRPSTDESSF 290

GO:0009507 "chloroplast" evidence=ISM;IDA

GO:0009941 "chloroplast envelope" evidence=IDA

GO:0009535 "chloroplast thylakoid membrane" evidence=IDA

GO:0009570 "chloroplast stroma" evidence=IDA

GO:0009409 "response to cold" evidence=IEP;RCA

GO:0010319 "stromule" evidence=IDA

GO:0009416 "response to light stimulus" evidence=IEP

GO:0009744 "response to sucrose stimulus" evidence=IEP

GO:0006833 "water transport" evidence=RCA

GO:0009651 "response to salt stress" evidence=RCA

GO:0009750 "response to fructose stimulus" evidence=RCA

GO:0019684 "photosynthesis, light reaction" evidence=RCA

GO:0030003 "cellular cation homeostasis" evidence=RCA

GO:0042742 "defense response to bacterium" evidence=RCA

GO:0070838 "divalent metal ion transport" evidence=RCA

TAIR|locus:2044289 ACR5 "ACT domain repeat 5" [Arabidopsis thaliana (taxid:3702)]

 Score = 109 (43.4 bits), Expect = 1.3e-09, Sum P(2) = 1.3e-09
 Identities = 24/81 (29%), Positives = 45/81 (55%)

Query:     2 PHVLIDQDSNSDATIVQLSFGDRLGALIDTMNALKDLGLDVAKGTVNTEGSVKQTKFFIT 61
             P V+ID +   D T++++   ++ G L++ +  L +L L + K  ++++G      F +T
Sbjct:    25 PRVVIDNEVCKDVTVIKVDSANKHGILLEVVQVLTELNLTIKKAYISSDGGWFMDVFNVT 84

Query:    62 RLDTGRKVEDPDLLERIRLTI 82
               D G KV D  +LE IR ++
Sbjct:    85 DQD-GNKVTDEIVLEYIRKSL 104

GO:0008152 "metabolic process" evidence=IEA

GO:0009507 "chloroplast" evidence=ISM

GO:0016597 "amino acid binding" evidence=IEA;ISS

TAIR|locus:2033223 ACR4 "ACT domain repeat 4" [Arabidopsis thaliana (taxid:3702)]

 Score = 113 (44.8 bits), Expect = 1.1e-08, Sum P(2) = 1.1e-08
 Identities = 25/81 (30%), Positives = 45/81 (55%)

Query:     2 PHVLIDQDSNSDATIVQLSFGDRLGALIDTMNALKDLGLDVAKGTVNTEGSVKQTKFFIT 61
             P V+ID DS   AT++++   +  G L++ +  L DL L + K  ++++G      F +T
Sbjct:    25 PRVVIDNDSCKKATVIRVDSANEYGILLEVVQILTDLNLTITKAYISSDGGWFMDVFNVT 84

Query:    62 RLDTGRKVEDPDLLERIRLTI 82
               D G KV D  +L+ I+ ++
Sbjct:    85 DQD-GNKVTDEVVLDYIQKSL 104

GO:0008152 "metabolic process" evidence=IEA

GO:0009507 "chloroplast" evidence=ISM

GO:0016597 "amino acid binding" evidence=IEA

GO:0005829 "cytosol" evidence=ISS

GO:0006521 "regulation of cellular amino acid metabolic process" evidence=ISS

GO:0009735 "response to cytokinin stimulus" evidence=IEP

TAIR|locus:2132609 ACR7 "ACT domain repeat 7" [Arabidopsis thaliana (taxid:3702)]

 Score = 95 (38.5 bits), Expect = 6.7e-08, Sum P(2) = 6.7e-08
 Identities = 22/82 (26%), Positives = 45/82 (54%)

Query:     1 MPHVLIDQDSNSDATIVQLSFGDRLGALIDTMNALKDLGLDVAKGTVNTEGSVKQTKFFI 60
             MP V+ID     ++T+V++      G L++++  L D+ L + K  ++++G      F +
Sbjct:    19 MPRVVIDNGVCPNSTVVKIDSARSPGILLESVQLLTDMNLWIKKAYISSDGKWNMDVFHV 78

Query:    61 TRLDTGRKVEDPDLLERIRLTI 82
             + L+ G K+ D +L+  I  +I
Sbjct:    79 SDLN-GDKLTDENLIRYIEKSI 99

GO:0008152 "metabolic process" evidence=IEA

GO:0016597 "amino acid binding" evidence=IEA;ISS

GO:0005829 "cytosol" evidence=ISS

TAIR|locus:2078678 ACR6 "ACT domain repeat 6" [Arabidopsis thaliana (taxid:3702)]

 Score = 115 (45.5 bits), Expect = 1.5e-07, Sum P(2) = 1.5e-07
 Identities = 24/84 (28%), Positives = 48/84 (57%)

Query:     2 PHVLIDQDSNSDATIVQLSFGDRLGALIDTMNALKDLGLDVAKGTVNTEGSVKQTKFFIT 61
             P V+ID +++ DAT++Q+   ++ G L++ +  L D+ L + K  ++++G      F + 
Sbjct:    16 PRVVIDNNASDDATVIQVDSVNKHGTLLEVVQVLTDMNLVIKKAYISSDGGWFMDVFKVI 75

Query:    62 RLDTGRKVEDPDLLERIRLTIINN 85
               D G K+ D  +L+ I+  I +N
Sbjct:    76 DQD-GNKIRDTQVLDYIQKRIESN 98

GO:0008152 "metabolic process" evidence=IEA

GO:0009507 "chloroplast" evidence=ISM

GO:0016597 "amino acid binding" evidence=IEA;ISS

GO:0019408 "dolichol biosynthetic process" evidence=RCA

TAIR|locus:2034630 ACR8 "AT1G12420" [Arabidopsis thaliana (taxid:3702)]

 Score = 114 (45.2 bits), Expect = 4.2e-07, Sum P(2) = 4.2e-07
 Identities = 27/81 (33%), Positives = 44/81 (54%)

Query:     2 PHVLIDQDSNSDATIVQLSFGDRLGALIDTMNALKDLGLDVAKGTVNTEGSVKQTKFFIT 61
             P V+ID    S ATIV++    R G L++ +  L DL L + K  ++++G+     F +T
Sbjct:    20 PRVVIDNGVCSSATIVKVDSSRRNGILLEAVQILTDLNLSIKKAYISSDGTWNMDVFHVT 79

Query:    62 RLDTGRKVEDPDLLERIRLTI 82
              L+ G K+ D  +L  I  +I
Sbjct:    80 DLN-GNKLNDQSVLRYIEQSI 99

GO:0005575 "cellular_component" evidence=ND

GO:0008152 "metabolic process" evidence=IEA

GO:0016597 "amino acid binding" evidence=IEA;ISS

GO:0009737 "response to abscisic acid stimulus" evidence=IEP

TAIR|locus:2152094 ACR1 "ACT domain repeat 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 106 (42.4 bits), Expect = 1.0e-06, Sum P(2) = 1.0e-06
 Identities = 23/84 (27%), Positives = 46/84 (54%)

Query:     2 PHVLIDQDSNSDATIVQLSFGDRLGALIDTMNALKDLGLDVAKGTVNTEGSVKQTKFFIT 61
             P V +D DS+ + T++++   ++ G L+D +  L DL L ++K  ++++G      F +T
Sbjct:    24 PRVCVDNDSDPECTLIKVDSANKYGILLDMVQVLADLDLVISKCYISSDGEWFMDVFHVT 83

Query:    62 RLDTGRKVEDPDLLERIRLTIINN 85
                 G K+ D  L+  I+  I ++
Sbjct:    84 D-QLGNKLTDRSLILYIQQAICSS 106

GO:0008152 "metabolic process" evidence=IEA

GO:0016597 "amino acid binding" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISS

TAIR|locus:2025317 ACR3 "ACT domain repeat 3" [Arabidopsis thaliana (taxid:3702)]

 Score = 98 (39.6 bits), Expect = 3.3e-06, Sum P(2) = 3.3e-06
 Identities = 28/115 (24%), Positives = 54/115 (46%)

Query:     2 PHVLIDQDSNSDATIVQLSFGDRLGALIDTMNALKDLGLDVAKGTVNTEGSVKQTKFFIT 61
             P V ID  S  + T+V++   ++ G L++ +  L DL L + K  ++++G      F +T
Sbjct:    23 PSVSIDNTSCKECTLVKVDSMNKPGILLEVVQVLTDLDLTITKAYISSDGGWFMDVFHVT 82

Query:    62 RLDTGRKVEDPDLLERIRLTIINNLLKYHPESSEQLAMGEAFGIKAPEKKLDVDI 116
                 G KV D   ++ I   ++    K H  +S+    G+  G+ +      ++I
Sbjct:    83 D-QQGNKVTDSKTIDYIE-KVLGP--KGHASASQNTWPGKRVGVHSLGDHTSIEI 133

GO:0006807 "nitrogen compound metabolic process" evidence=IEA

GO:0008152 "metabolic process" evidence=IEA

GO:0008773 "[protein-PII

GO:0016597 "amino acid binding" evidence=IEA;ISS

GO:0005829 "cytosol" evidence=TAS

GO:0019243 "methylglyoxal catabolic process to D-lactate" evidence=RCA

GO:0019344 "cysteine biosynthetic process" evidence=RCA

TIGR_CMR|SPO_0397 SPO_0397 "protein-P-II uridylyltransferase" [Ruegeria pomeroyi DSS-3 (taxid:246200)]

 Score = 124 (48.7 bits), Expect = 4.6e-05, P = 4.6e-05
 Identities = 50/175 (28%), Positives = 79/175 (45%)

Query:     4 VLIDQDSNSDATIVQLSFGDRLGALIDTMNALKDLGLDV--AKGTVNTEGSVKQTKFFIT 61
             + +D D + DAT    +  D  G       AL  +G +V  A+     +G V    F+I 
Sbjct:   707 IRLDPDEDRDATRACFAMADHPGIFSRMAGALALVGANVVDARSYTTKDGYVTDA-FWIQ 765

Query:    62 RLDTGRKVEDPDLLERIRLTIINNLLKYHPESSEQLAMGEAFGIKAPEKKLDVDIATHIH 121
               + G   E   L  R+   I+  L K    + + L   +   IK  EK  +V   THI 
Sbjct:   766 DAE-GHPYEAARL-PRLSQMILKTL-KGEVVARDALKSRDK--IKKREKAFNVP--THIT 818

Query:   122 VKEDGPK-RSLLYIETADRPGLLVEIMKIIADVNVDVESAEIDTEGLVAKDKFHV 175
                +G    +++ ++T DRPGLL ++ + +A  NV + +A I T G    D F+V
Sbjct:   819 FDNEGSDIYTIIEVDTRDRPGLLYDLARALAAANVYIANAVIATYGEQVVDSFYV 873

GO:0006464 "cellular protein modification process" evidence=ISS

GO:0008773 "[protein-PII

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	208
TIGR01693	850	TIGR01693, UTase_glnD, [Protein-PII] uridylyltrans	1e-07
cd04899	70	cd04899, ACT_ACR-UUR-like_2, C-terminal ACT domain	3e-07
PRK05092	931	PRK05092, PRK05092, PII uridylyl-transferase; Prov	8e-07
cd04873	70	cd04873, ACT_UUR-ACR-like, ACT domains of the bact	1e-06
COG2844	867	COG2844, GlnD, UTP:GlnB (protein PII) uridylyltran	5e-06
PRK05092	931	PRK05092, PRK05092, PII uridylyl-transferase; Prov	9e-05
PRK03059	856	PRK03059, PRK03059, PII uridylyl-transferase; Prov	1e-04
PRK03381	774	PRK03381, PRK03381, PII uridylyl-transferase; Prov	2e-04
cd04926	72	cd04926, ACT_ACR_4, C-terminal ACT domain, of a no	4e-04
PRK03381	774	PRK03381, PRK03381, PII uridylyl-transferase; Prov	0.001
cd04876	71	cd04876, ACT_RelA-SpoT, ACT domain found C-termina	0.002
PRK00275	895	PRK00275, glnD, PII uridylyl-transferase; Provisio	0.002
pfam13291	77	pfam13291, ACT_4, ACT domain	0.003

>gnl|CDD|233534 TIGR01693, UTase_glnD, [Protein-PII] uridylyltransferase

 Score = 50.9 bits (122), Expect = 1e-07
 Identities = 45/193 (23%), Positives = 73/193 (37%), Gaps = 11/193 (5%)

Query: 2   PHVLIDQDSNSDATIVQLSFGDRLGALIDTMNALKDLGLDVAKGTVNT-EGSVKQTKFFI 60
           P  LID    S  T V +   D+ G       AL  L L V    VNT +  V    F +
Sbjct: 656 PLALIDGTRPSGGTEVFIYAPDQPGLFAKVAGALAMLSLSVHDAQVNTTKDGVALDTFVV 715

Query: 61  TRLDTGRKVEDPDLLERIRLT--IINNLLKYHPESSEQLAMGEAFGIKAPEKKLDVDIAT 118
             L       +    E ++    ++  L K     +          ++       V I  
Sbjct: 716 QDLFGSPPAAERVFQELLQGLVDVLAGLAKDPD--TISARRARRRRLQHFAVPPRVTILN 773

Query: 119 HIHVKEDGPKRSLLYIETADRPGLLVEIMKIIADVNVDVESAEIDTEGLVAKDKFHVS-Y 177
                    K +++ +   DRPGLL  + + + ++ + ++SA+I T G  A+D F+V+  
Sbjct: 774 TA-----SRKATIMEVRALDRPGLLARVGRTLEELGLSIQSAKITTFGEKAEDVFYVTDL 828

Query: 178 GGAALNSSLSQVL 190
            G  L     Q L
Sbjct: 829 FGLKLTDEEEQRL 841

This model describes GlnD, the uridylyltransferase/uridylyl-removing enzyme for the nitrogen regulatory protein PII. Not all homologs of PII share the property of uridylyltransferase modification on the characteristic Tyr residue (see Prosite pattern PS00496 and document PDOC00439), but the modification site is preserved in the PII homolog of all species with a member of this family [Central intermediary metabolism, Nitrogen metabolism, Regulatory functions, Protein interactions]. Length = 850

>gnl|CDD|153171 cd04899, ACT_ACR-UUR-like_2, C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD and related domains

 Score = 45.9 bits (110), Expect = 3e-07
 Identities = 17/47 (36%), Positives = 34/47 (72%)

Query: 130 SLLYIETADRPGLLVEIMKIIADVNVDVESAEIDTEGLVAKDKFHVS 176
           ++L +   DRPGLL ++ +++A++ +++ SA+I T G  A+D F+V+
Sbjct: 1   TVLELTALDRPGLLADVTRVLAELGLNIHSAKIATLGERAEDVFYVT 47

This ACT domain family, ACT_ACR-UUR-like_2, includes the second of two C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD; including those enzymes similar to the GlnD found in enteric Escherichia coli and those found in photosynthetic, nitrogen-fixing bacterium Rhodospirillum rubrum. Also included in this CD are the second and fourth ACT domains of a novel protein composed almost entirely of ACT domain repeats, the ACR protein. These ACR proteins, found in Arabidopsis and Oryza, are proposed to function as novel regulatory or sensor proteins in plants. Members of this CD belong to the superfamily of ACT regulatory domains. Length = 70

>gnl|CDD|235342 PRK05092, PRK05092, PII uridylyl-transferase; Provisional

 Score = 48.3 bits (116), Expect = 8e-07
 Identities = 32/120 (26%), Positives = 57/120 (47%), Gaps = 7/120 (5%)

Query: 58  FFITRLDTGRKVEDPDLLERIRLTIINNLLKYHPESSEQLAMGEAFGIKAPEKKLDVDIA 117
           F+I     GR  ++P  L R+    I + L       E LA  +    K   +   V   
Sbjct: 777 FWIQDAF-GRDEDEPRRLARLA-KAIEDALSGEVRLPEALA--KRTKPKKRARAFHV--P 830

Query: 118 THIHVKEDGPKR-SLLYIETADRPGLLVEIMKIIADVNVDVESAEIDTEGLVAKDKFHVS 176
             + +  +   R +++ +   DRPGLL ++ + ++D+N+++ SA I T G  A D F+V+
Sbjct: 831 PRVTIDNEASNRFTVIEVNGRDRPGLLYDLTRALSDLNLNIASAHIATYGERAVDVFYVT 890

Length = 931

>gnl|CDD|153145 cd04873, ACT_UUR-ACR-like, ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD

 Score = 44.5 bits (106), Expect = 1e-06
 Identities = 21/67 (31%), Positives = 36/67 (53%), Gaps = 1/67 (1%)

Query: 130 SLLYIETADRPGLLVEIMKIIADVNVDVESAEIDTEGLVAKDKFHVSY-GGAALNSSLSQ 188
           +++ +   DRPGLL +I +++AD+ +++  A I T G  A D F+V+   G  L+     
Sbjct: 1   TVVEVYAPDRPGLLADITRVLADLGLNIHDARISTTGERALDVFYVTDSDGRPLDPERIA 60

Query: 189 VLVNCLR 195
            L   L 
Sbjct: 61  RLEEALE 67

This ACT domain family, ACT_UUR_ACR-like, includes the two C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD; including those enzymes similar to the GlnD found in enteric Escherichia coli and those found in photosynthetic, nitrogen-fixing bacterium Rhodospirillum rubrum. Also included in this CD are the four ACT domains of a novel protein composed almost entirely of ACT domain repeats (the ACR protein) and like proteins. These ACR proteins, found in Arabidopsis and Oryza, are proposed to function as novel regulatory or sensor proteins in plants. This CD also includes the first of the two ACT domains that comprise the Glycine Cleavage System Transcriptional Repressor (GcvR) protein and related domains, as well as, the N-terminal ACT domain of a yet characterized Arabidopsis/Oryza predicted tyrosine kinase. Members of this CD belong to the superfamily of ACT regulatory domains. Length = 70

>gnl|CDD|225400 COG2844, GlnD, UTP:GlnB (protein PII) uridylyltransferase [Posttranslational modification, protein turnover, chaperones]

 Score = 46.2 bits (110), Expect = 5e-06
 Identities = 17/49 (34%), Positives = 28/49 (57%)

Query: 127 PKRSLLYIETADRPGLLVEIMKIIADVNVDVESAEIDTEGLVAKDKFHV 175
             +++L +   DRPGLL  +  + AD+ + + SA+I T G   +D F V
Sbjct: 789 NDKTVLEVRALDRPGLLAALAGVFADLGLSLHSAKITTFGERVEDVFIV 837

Length = 867

>gnl|CDD|235342 PRK05092, PRK05092, PII uridylyl-transferase; Provisional

 Score = 42.2 bits (100), Expect = 9e-05
 Identities = 25/78 (32%), Positives = 41/78 (52%), Gaps = 1/78 (1%)

Query: 2   PHVLIDQDSNSDATIVQLSFGDRLGALIDTMNALKDLGLDVAKGTVNTEGSVKQTKFFIT 61
           P V ID ++++  T+++++  DR G L D   AL DL L++A   + T G      F++T
Sbjct: 831 PRVTIDNEASNRFTVIEVNGRDRPGLLYDLTRALSDLNLNIASAHIATYGERAVDVFYVT 890

Query: 62  RLDTGRKVEDPDLLERIR 79
            L  G K+ +      IR
Sbjct: 891 DL-FGLKITNEARQAAIR 907

Length = 931

>gnl|CDD|235101 PRK03059, PRK03059, PII uridylyl-transferase; Provisional

 Score = 41.8 bits (99), Expect = 1e-04
 Identities = 20/66 (30%), Positives = 38/66 (57%), Gaps = 2/66 (3%)

Query: 124 EDGPKRSLLYIETADRPGLLVEIMKIIADVNVDVESAEIDTEGLVAKDKFHVSYGGAALN 183
           ++  +  +L +   DRPGLL  I +++A+  V V +A+I+T G   +D F +   G+ L+
Sbjct: 781 DERGQYYILSVSANDRPGLLYAIARVLAEHRVSVHTAKINTLGERVEDTFLID--GSGLS 838

Query: 184 SSLSQV 189
            +  Q+
Sbjct: 839 DNRLQI 844

Length = 856

>gnl|CDD|235123 PRK03381, PRK03381, PII uridylyl-transferase; Provisional

 Score = 41.1 bits (97), Expect = 2e-04
 Identities = 18/51 (35%), Positives = 27/51 (52%)

Query: 2   PHVLIDQDSNSDATIVQLSFGDRLGALIDTMNALKDLGLDVAKGTVNTEGS 52
           P VL    ++ DAT++++   DR G L     AL+  G+DV    V T G+
Sbjct: 695 PRVLWLDGASPDATVLEVRAADRPGLLARLARALERAGVDVRWARVATLGA 745

Length = 774

>gnl|CDD|153198 cd04926, ACT_ACR_4, C-terminal ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein)

 Score = 37.3 bits (87), Expect = 4e-04
 Identities = 16/45 (35%), Positives = 28/45 (62%)

Query: 132 LYIETADRPGLLVEIMKIIADVNVDVESAEIDTEGLVAKDKFHVS 176
           L + T DR GLL ++ ++  +  + V  AEI T+G +A + F+V+
Sbjct: 4   LELRTEDRVGLLSDVTRVFRENGLTVTRAEISTQGDMAVNVFYVT 48

This CD includes the C-terminal ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products have been described (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) and are represented in this CD. Members of this CD belong to the superfamily of ACT regulatory domains. Length = 72

>gnl|CDD|235123 PRK03381, PRK03381, PII uridylyl-transferase; Provisional

 Score = 38.8 bits (91), Expect = 0.001
 Identities = 18/56 (32%), Positives = 27/56 (48%)

Query: 126 GPKRSLLYIETADRPGLLVEIMKIIADVNVDVESAEIDTEGLVAKDKFHVSYGGAA 181
            P  ++L +  ADRPGLL  + + +    VDV  A + T G    D F+V+     
Sbjct: 704 SPDATVLEVRAADRPGLLARLARALERAGVDVRWARVATLGADVVDVFYVTGAAGG 759

Length = 774

>gnl|CDD|153148 cd04876, ACT_RelA-SpoT, ACT domain found C-terminal of the RelA/SpoT domains

 Score = 35.5 bits (83), Expect = 0.002
 Identities = 12/33 (36%), Positives = 20/33 (60%)

Query: 132 LYIETADRPGLLVEIMKIIADVNVDVESAEIDT 164
           + +E  DRPGLL +I  +IA+  +++ S    T
Sbjct: 1   IRVEAIDRPGLLADITTVIAEEKINILSVNTRT 33

ACT_RelA-SpoT: the ACT domain found C-terminal of the RelA/SpoT domains. Enzymes of the Rel/Spo family enable bacteria to survive prolonged periods of nutrient limitation by controlling guanosine-3'-diphosphate-5'-(tri)diphosphate ((p)ppGpp) production and subsequent rRNA repression (stringent response). Both the synthesis of (p)ppGpp from ATP and GDP(GTP), and its hydrolysis to GDP(GTP) and pyrophosphate, are catalyzed by Rel/Spo proteins. In Escherichia coli and its close relatives, the metabolism of (p)ppGpp is governed by two homologous proteins, RelA and SpoT. The RelA protein catalyzes (p)ppGpp synthesis in a reaction requiring its binding to ribosomes bearing codon-specified uncharged tRNA. The major role of the SpoT protein is the breakdown of (p)ppGpp by a manganese-dependent (p)ppGpp pyrophosphohydrolase activity. Although the stringent response appears to be tightly regulated by these two enzymes in E. coli, a bifunctional Rel/Spo protein has been discovered in most gram-positive organisms studied so far. These bifunctional Rel/Spo homologs (rsh) appear to modulate (p)ppGpp levels through two distinct active sites that are controlled by a reciprocal regulatory mechanism ensuring inverse coupling of opposing activities. In studies with the Streptococcus equisimilis Rel/Spo homolog, the C-terminal domain appears to be involved in this reciprocal regulation of the two opposing catalytic activities present in the N-terminal domain, ensuring that both synthesis and degradation activities are not coinduced. Members of this CD belong to the superfamily of ACT regulatory domains. Length = 71

>gnl|CDD|234709 PRK00275, glnD, PII uridylyl-transferase; Provisional

 Score = 38.5 bits (90), Expect = 0.002
 Identities = 34/148 (22%), Positives = 66/148 (44%), Gaps = 9/148 (6%)

Query: 31  TMNALKDLGLDVAKGTVNTEGSVKQTKFFITRLDTGRKV-EDPDLLERIRLTIINNLLKY 89
           T+ A+  L L++    + T  S      +I   D G  + ++P  +E+IR  +   L   
Sbjct: 721 TVAAMDQLNLNIHDARIITSSSQFTLDTYIVLDDDGEPIGDNPARIEQIREGLTEALR-- 778

Query: 90  HPESSEQLAMGEAFGIKAPEKKLDVDIATHIHVKEDGPK-RSLLYIETADRPGLLVEIMK 148
           +P+             + P +       T + +  D  +  ++L I   DRPGLL  I +
Sbjct: 779 NPDDYP-----TIIQRRVPRQLKHFAFPTQVTISNDAQRPVTVLEIIAPDRPGLLARIGR 833

Query: 149 IIADVNVDVESAEIDTEGLVAKDKFHVS 176
           I  + ++ +++A+I T G   +D F ++
Sbjct: 834 IFLEFDLSLQNAKIATLGERVEDVFFIT 861

Length = 895

>gnl|CDD|222030 pfam13291, ACT_4, ACT domain

 Score = 34.8 bits (81), Expect = 0.003
 Identities = 12/35 (34%), Positives = 21/35 (60%)

Query: 132 LYIETADRPGLLVEIMKIIADVNVDVESAEIDTEG 166
           L IE  DRPGLL +I  +I++   ++ S   +++ 
Sbjct: 7   LEIEAIDRPGLLADITTVISNEKANILSVNAESKD 41

ACT domains bind to amino acids and regulate associated enzyme domains. These ACT domains are found at the C-terminus of the RelA protein. Length = 77

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	208
PRK05007	884	PII uridylyl-transferase; Provisional	100.0
PRK01759	854	glnD PII uridylyl-transferase; Provisional	100.0
TIGR01693	850	UTase_glnD [Protein-PII] uridylyltransferase. This	99.98
COG2844	867	GlnD UTP:GlnB (protein PII) uridylyltransferase [P	99.97
PRK00275	895	glnD PII uridylyl-transferase; Provisional	99.97
PRK04374	869	PII uridylyl-transferase; Provisional	99.97
PRK05092	931	PII uridylyl-transferase; Provisional	99.97
PRK03381	774	PII uridylyl-transferase; Provisional	99.96
PRK03059	856	PII uridylyl-transferase; Provisional	99.96
cd04897	75	ACT_ACR_3 ACT domain-containing protein which is c	99.83
cd04897	75	ACT_ACR_3 ACT domain-containing protein which is c	99.8
cd04896	75	ACT_ACR-like_3 ACT domain-containing protein which	99.8
cd04895	72	ACT_ACR_1 ACT domain-containing protein which is c	99.79
cd04895	72	ACT_ACR_1 ACT domain-containing protein which is c	99.77
PRK11589	190	gcvR glycine cleavage system transcriptional repre	99.76
cd04896	75	ACT_ACR-like_3 ACT domain-containing protein which	99.72
cd04925	74	ACT_ACR_2 ACT domain-containing protein which is c	99.69
cd04900	73	ACT_UUR-like_1 ACT domain family, ACT_UUR-like_1,	99.69
cd04927	76	ACT_ACR-like_2 Second ACT domain, of a novel type	99.65
COG2716	176	GcvR Glycine cleavage system regulatory protein [A	99.62
cd04925	74	ACT_ACR_2 ACT domain-containing protein which is c	99.57
cd04927	76	ACT_ACR-like_2 Second ACT domain, of a novel type	99.53
PRK00275	895	glnD PII uridylyl-transferase; Provisional	99.52
cd04900	73	ACT_UUR-like_1 ACT domain family, ACT_UUR-like_1,	99.52
PRK05007	884	PII uridylyl-transferase; Provisional	99.5
PRK01759	854	glnD PII uridylyl-transferase; Provisional	99.5
cd04928	68	ACT_TyrKc Uncharacterized, N-terminal ACT domain o	99.47
PRK04374	869	PII uridylyl-transferase; Provisional	99.46
cd04926	72	ACT_ACR_4 C-terminal ACT domain, of a novel type o	99.45
PRK05092	931	PII uridylyl-transferase; Provisional	99.41
cd04899	70	ACT_ACR-UUR-like_2 C-terminal ACT domains of the b	99.41
PRK03059	856	PII uridylyl-transferase; Provisional	99.37
PRK03381	774	PII uridylyl-transferase; Provisional	99.36
PRK00227	693	glnD PII uridylyl-transferase; Provisional	99.35
cd04899	70	ACT_ACR-UUR-like_2 C-terminal ACT domains of the b	99.33
TIGR01693	850	UTase_glnD [Protein-PII] uridylyltransferase. This	99.31
cd04926	72	ACT_ACR_4 C-terminal ACT domain, of a novel type o	99.24
COG2844	867	GlnD UTP:GlnB (protein PII) uridylyltransferase [P	99.24
cd04873	70	ACT_UUR-ACR-like ACT domains of the bacterial sign	99.14
cd04873	70	ACT_UUR-ACR-like ACT domains of the bacterial sign	99.07
cd04928	68	ACT_TyrKc Uncharacterized, N-terminal ACT domain o	99.03
PF13740	76	ACT_6: ACT domain; PDB: 1ZPV_A 3P96_A 1U8S_A.	98.96
PF13740	76	ACT_6: ACT domain; PDB: 1ZPV_A 3P96_A 1U8S_A.	98.96
cd04870	75	ACT_PSP_1 CT domains found N-terminal of phosphose	98.79
cd04893	77	ACT_GcvR_1 ACT domains that comprise the Glycine C	98.79
PF01842	66	ACT: ACT domain; InterPro: IPR002912 The ACT domai	98.68
cd04893	77	ACT_GcvR_1 ACT domains that comprise the Glycine C	98.67
cd04870	75	ACT_PSP_1 CT domains found N-terminal of phosphose	98.64
PF01842	66	ACT: ACT domain; InterPro: IPR002912 The ACT domai	98.64
cd04894	69	ACT_ACR-like_1 ACT domain-containing protein which	98.61
COG4747	142	ACT domain-containing protein [General function pr	98.48
PRK00194	90	hypothetical protein; Validated	98.47
cd04872	88	ACT_1ZPV ACT domain proteins similar to the yet un	98.42
cd04869	81	ACT_GcvR_2 ACT domains that comprise the Glycine C	98.4
COG3830	90	ACT domain-containing protein [Signal transduction	98.38
PRK11589	190	gcvR glycine cleavage system transcriptional repre	98.33
cd04872	88	ACT_1ZPV ACT domain proteins similar to the yet un	98.32
cd04875	74	ACT_F4HF-DF N-terminal ACT domain of formyltetrahy	98.31
cd04869	81	ACT_GcvR_2 ACT domains that comprise the Glycine C	98.31
PRK00194	90	hypothetical protein; Validated	98.3
cd04875	74	ACT_F4HF-DF N-terminal ACT domain of formyltetrahy	98.26
PRK06027	286	purU formyltetrahydrofolate deformylase; Reviewed	98.11
PF13291	80	ACT_4: ACT domain; PDB: 2KO1_B 3IBW_A.	98.09
PF13291	80	ACT_4: ACT domain; PDB: 2KO1_B 3IBW_A.	97.96
TIGR00655	280	PurU formyltetrahydrofolate deformylase. This mode	97.92
PRK06027	286	purU formyltetrahydrofolate deformylase; Reviewed	97.9
PRK13010	289	purU formyltetrahydrofolate deformylase; Reviewed	97.84
cd04887	74	ACT_MalLac-Enz ACT_MalLac-Enz CD includes the N-te	97.83
TIGR00655	280	PurU formyltetrahydrofolate deformylase. This mode	97.83
PRK13011	286	formyltetrahydrofolate deformylase; Reviewed	97.81
cd04905	80	ACT_CM-PDT C-terminal ACT domain of the bifunction	97.78
PRK13010	289	purU formyltetrahydrofolate deformylase; Reviewed	97.76
cd04887	74	ACT_MalLac-Enz ACT_MalLac-Enz CD includes the N-te	97.75
cd04889	56	ACT_PDH-BS-like C-terminal ACT domain of the monof	97.7
COG3830	90	ACT domain-containing protein [Signal transduction	97.69
cd04908	66	ACT_Bt0572_1 N-terminal ACT domain of a novel prot	97.64
PRK13011	286	formyltetrahydrofolate deformylase; Reviewed	97.64
cd04886	73	ACT_ThrD-II-like C-terminal ACT domain of biodegra	97.58
cd04879	71	ACT_3PGDH-like ACT_3PGDH-like CD includes the C-te	97.57
PRK06737	76	acetolactate synthase 1 regulatory subunit; Valida	97.56
COG0788	287	PurU Formyltetrahydrofolate hydrolase [Nucleotide	97.55
cd04909	69	ACT_PDH-BS C-terminal ACT domain of the monofuncti	97.55
cd04886	73	ACT_ThrD-II-like C-terminal ACT domain of biodegra	97.55
PRK06737	76	acetolactate synthase 1 regulatory subunit; Valida	97.55
cd04931	90	ACT_PAH ACT domain of the nonheme iron-dependent a	97.54
cd04894	69	ACT_ACR-like_1 ACT domain-containing protein which	97.52
cd04902	73	ACT_3PGDH-xct C-terminal ACT (regulatory) domain o	97.51
cd04888	76	ACT_PheB-BS C-terminal ACT domain of a small (~147	97.51
CHL00100	174	ilvH acetohydroxyacid synthase small subunit	97.51
PRK08178	96	acetolactate synthase 1 regulatory subunit; Review	97.5
cd04877	74	ACT_TyrR N-terminal ACT domain of the TyrR protein	97.5
PRK13562	84	acetolactate synthase 1 regulatory subunit; Provis	97.47
TIGR00119	157	acolac_sm acetolactate synthase, small subunit. ac	97.45
PRK08178	96	acetolactate synthase 1 regulatory subunit; Review	97.43
cd04878	72	ACT_AHAS N-terminal ACT domain of the Escherichia	97.42
PRK13562	84	acetolactate synthase 1 regulatory subunit; Provis	97.41
cd04889	56	ACT_PDH-BS-like C-terminal ACT domain of the monof	97.4
cd04881	79	ACT_HSDH-Hom ACT_HSDH_Hom CD includes the C-termin	97.38
cd04908	66	ACT_Bt0572_1 N-terminal ACT domain of a novel prot	97.38
cd04877	74	ACT_TyrR N-terminal ACT domain of the TyrR protein	97.36
cd04903	71	ACT_LSD C-terminal ACT domain of the L-serine dehy	97.35
cd04874	72	ACT_Af1403 N-terminal ACT domain of the yet unchar	97.35
cd04888	76	ACT_PheB-BS C-terminal ACT domain of a small (~147	97.32
cd04901	69	ACT_3PGDH C-terminal ACT (regulatory) domain of D-	97.31
CHL00100	174	ilvH acetohydroxyacid synthase small subunit	97.3
cd04909	69	ACT_PDH-BS C-terminal ACT domain of the monofuncti	97.29
cd04882	65	ACT_Bt0572_2 C-terminal ACT domain of a novel prot	97.29
PRK11895	161	ilvH acetolactate synthase 3 regulatory subunit; R	97.29
PRK11152	76	ilvM acetolactate synthase 2 regulatory subunit; P	97.22
COG0788	287	PurU Formyltetrahydrofolate hydrolase [Nucleotide	97.22
COG2716	176	GcvR Glycine cleavage system regulatory protein [A	97.22
cd04881	79	ACT_HSDH-Hom ACT_HSDH_Hom CD includes the C-termin	97.2
cd04880	75	ACT_AAAH-PDT-like ACT domain of the nonheme iron-d	97.14
cd04883	72	ACT_AcuB C-terminal ACT domain of the Bacillus sub	97.13
cd04874	72	ACT_Af1403 N-terminal ACT domain of the yet unchar	97.13
cd04904	74	ACT_AAAH ACT domain of the nonheme iron-dependent,	97.12
PRK08577	136	hypothetical protein; Provisional	97.11
cd04898	77	ACT_ACR-like_4 ACT domain-containing protein which	97.1
PRK11152	76	ilvM acetolactate synthase 2 regulatory subunit; P	97.09
TIGR00119	157	acolac_sm acetolactate synthase, small subunit. ac	97.09
PRK04435	147	hypothetical protein; Provisional	97.08
PRK11895	161	ilvH acetolactate synthase 3 regulatory subunit; R	97.05
cd04878	72	ACT_AHAS N-terminal ACT domain of the Escherichia	97.0
PRK08577	136	hypothetical protein; Provisional	96.98
cd04879	71	ACT_3PGDH-like ACT_3PGDH-like CD includes the C-te	96.97
cd04884	72	ACT_CBS C-terminal ACT domain of the cystathionine	96.91
PRK11899	279	prephenate dehydratase; Provisional	96.89
cd04929	74	ACT_TPH ACT domain of the nonheme iron-dependent a	96.83
cd04876	71	ACT_RelA-SpoT ACT domain found C-terminal of the R	96.81
cd04884	72	ACT_CBS C-terminal ACT domain of the cystathionine	96.73
cd02116	60	ACT ACT domains are commonly involved in specifica	96.73
PRK04435	147	hypothetical protein; Provisional	96.69
cd02116	60	ACT ACT domains are commonly involved in specifica	96.68
cd04903	71	ACT_LSD C-terminal ACT domain of the L-serine dehy	96.63
cd04876	71	ACT_RelA-SpoT ACT domain found C-terminal of the R	96.63
cd04871	84	ACT_PSP_2 ACT domains found N-terminal of phosphos	96.61
PRK06635	404	aspartate kinase; Reviewed	96.58
cd04905	80	ACT_CM-PDT C-terminal ACT domain of the bifunction	96.57
PF13710	63	ACT_5: ACT domain; PDB: 2FGC_A 2PC6_A 2F1F_B.	96.56
cd04902	73	ACT_3PGDH-xct C-terminal ACT (regulatory) domain o	96.54
cd04882	65	ACT_Bt0572_2 C-terminal ACT domain of a novel prot	96.5
PF13710	63	ACT_5: ACT domain; PDB: 2FGC_A 2PC6_A 2F1F_B.	96.5
cd04883	72	ACT_AcuB C-terminal ACT domain of the Bacillus sub	96.5
TIGR00719	208	sda_beta L-serine dehydratase, iron-sulfur-depende	96.48
PRK07334	403	threonine dehydratase; Provisional	96.46
COG0077	279	PheA Prephenate dehydratase [Amino acid transport	96.4
cd04901	69	ACT_3PGDH C-terminal ACT (regulatory) domain of D-	96.38
cd04930	115	ACT_TH ACT domain of the nonheme iron-dependent ar	96.3
PRK07334	403	threonine dehydratase; Provisional	96.22
PRK00227	693	glnD PII uridylyl-transferase; Provisional	96.19
PRK11790	409	D-3-phosphoglycerate dehydrogenase; Provisional	96.09
TIGR00656	401	asp_kin_monofn aspartate kinase, monofunctional cl	96.05
PRK10622	386	pheA bifunctional chorismate mutase/prephenate deh	95.98
cd04885	68	ACT_ThrD-I Tandem C-terminal ACT domains of threon	95.91
PRK10872	743	relA (p)ppGpp synthetase I/GTP pyrophosphokinase;	95.81
PRK10872	743	relA (p)ppGpp synthetase I/GTP pyrophosphokinase;	95.78
PRK11092	702	bifunctional (p)ppGpp synthetase II/ guanosine-3',	95.72
TIGR00691	683	spoT_relA (p)ppGpp synthetase, RelA/SpoT family. (	95.6
PRK06291	465	aspartate kinase; Provisional	95.47
PRK08210	403	aspartate kinase I; Reviewed	95.41
cd04880	75	ACT_AAAH-PDT-like ACT domain of the nonheme iron-d	95.3
cd04931	90	ACT_PAH ACT domain of the nonheme iron-dependent a	95.23
COG4747	142	ACT domain-containing protein [General function pr	95.22
TIGR00691	683	spoT_relA (p)ppGpp synthetase, RelA/SpoT family. (	95.21
COG1707	218	ACT domain-containing protein [General function pr	95.21
COG1707	218	ACT domain-containing protein [General function pr	95.2
PRK11092	702	bifunctional (p)ppGpp synthetase II/ guanosine-3',	95.19
COG0317	701	SpoT Guanosine polyphosphate pyrophosphohydrolases	95.04
cd04885	68	ACT_ThrD-I Tandem C-terminal ACT domains of threon	95.01
PLN02551	521	aspartokinase	95.01
COG0317	701	SpoT Guanosine polyphosphate pyrophosphohydrolases	94.84
PF13840	65	ACT_7: ACT domain ; PDB: 3S1T_A 1ZHV_A 3AB4_K 3AB2	94.58
PRK09181	475	aspartate kinase; Validated	94.37
PRK06382	406	threonine dehydratase; Provisional	94.36
PRK08818	370	prephenate dehydrogenase; Provisional	94.31
PRK09436	819	thrA bifunctional aspartokinase I/homoserine dehyd	94.23
PF13840	65	ACT_7: ACT domain ; PDB: 3S1T_A 1ZHV_A 3AB4_K 3AB2	94.19
PRK09034	454	aspartate kinase; Reviewed	94.15
COG0527	447	LysC Aspartokinases [Amino acid transport and meta	94.11
TIGR01327	525	PGDH D-3-phosphoglycerate dehydrogenase. This mode	94.06
PRK06545	359	prephenate dehydrogenase; Validated	94.0
PRK13581	526	D-3-phosphoglycerate dehydrogenase; Provisional	94.0
cd04871	84	ACT_PSP_2 ACT domains found N-terminal of phosphos	93.89
cd04906	85	ACT_ThrD-I_1 First of two tandem C-terminal ACT do	93.86
PRK11898	283	prephenate dehydratase; Provisional	93.66
cd04929	74	ACT_TPH ACT domain of the nonheme iron-dependent a	93.64
cd04904	74	ACT_AAAH ACT domain of the nonheme iron-dependent,	93.58
COG0440	163	IlvH Acetolactate synthase, small (regulatory) sub	93.49
TIGR00719	208	sda_beta L-serine dehydratase, iron-sulfur-depende	93.3
PRK06349	426	homoserine dehydrogenase; Provisional	93.23
PLN02317	382	arogenate dehydratase	93.21
TIGR00657	441	asp_kinases aspartate kinase. The Lys-sensitive en	92.97
PRK06382	406	threonine dehydratase; Provisional	92.92
PRK07431	587	aspartate kinase; Provisional	92.82
TIGR01268	436	Phe4hydrox_tetr phenylalanine-4-hydroxylase, tetra	92.82
KOG2663	309	consensus Acetolactate synthase, small subunit [Am	92.69
cd04898	77	ACT_ACR-like_4 ACT domain-containing protein which	92.64
PRK09084	448	aspartate kinase III; Validated	92.63
cd04906	85	ACT_ThrD-I_1 First of two tandem C-terminal ACT do	92.57
PRK06545	359	prephenate dehydrogenase; Validated	92.51
PRK08198	404	threonine dehydratase; Provisional	92.39
PRK11790	409	D-3-phosphoglycerate dehydrogenase; Provisional	92.38
PRK09224	504	threonine dehydratase; Reviewed	92.34
cd04932	75	ACT_AKiii-LysC-EC_1 ACT domains located C-terminal	92.19
COG0440	163	IlvH Acetolactate synthase, small (regulatory) sub	92.17
TIGR01127	380	ilvA_1Cterm threonine dehydratase, medium form. A	92.0
PRK11899	279	prephenate dehydratase; Provisional	91.21
TIGR01270	464	Trp_5_monoox tryptophan 5-monooxygenase, tetrameri	91.0
cd04935	75	ACT_AKiii-DAPDC_1 ACT domains of a bifunctional AK	90.61
COG2150	167	Predicted regulator of amino acid metabolism, cont	90.16
TIGR01127	380	ilvA_1Cterm threonine dehydratase, medium form. A	90.12
PRK12483	521	threonine dehydratase; Reviewed	90.07
PRK07431	587	aspartate kinase; Provisional	90.03
cd04930	115	ACT_TH ACT domain of the nonheme iron-dependent ar	89.56
COG2150	167	Predicted regulator of amino acid metabolism, cont	89.56
PRK08198	404	threonine dehydratase; Provisional	89.32
cd04932	75	ACT_AKiii-LysC-EC_1 ACT domains located C-terminal	88.92
cd04935	75	ACT_AKiii-DAPDC_1 ACT domains of a bifunctional AK	88.65
cd04890	62	ACT_AK-like_1 ACT domains found C-terminal to the	88.64
COG4492	150	PheB ACT domain-containing protein [General functi	88.5
PRK08818	370	prephenate dehydrogenase; Provisional	88.42
PRK08961	861	bifunctional aspartate kinase/diaminopimelate deca	88.3
COG0077	279	PheA Prephenate dehydratase [Amino acid transport	87.86
PRK06349	426	homoserine dehydrogenase; Provisional	87.72
COG3978	86	Acetolactate synthase (isozyme II), small (regulat	87.59
cd04922	66	ACT_AKi-HSDH-ThrA_2 ACT domains of the bifunctiona	87.21
cd04933	78	ACT_AK1-AT_1 ACT domains located C-terminal to the	87.08
cd04912	75	ACT_AKiii-LysC-EC-like_1 ACT domains located C-ter	86.77
PLN02550	591	threonine dehydratase	86.72
cd04912	75	ACT_AKiii-LysC-EC-like_1 ACT domains located C-ter	86.64
PRK09466	810	metL bifunctional aspartate kinase II/homoserine d	86.4
cd04891	61	ACT_AK-LysC-DapG-like_1 ACT domains of the lysine-	86.32
PRK13581	526	D-3-phosphoglycerate dehydrogenase; Provisional	86.03
cd04913	75	ACT_AKii-LysC-BS-like_1 ACT domains of the lysine-	85.73
cd04868	60	ACT_AK-like ACT domains C-terminal to the catalyti	85.39
PRK10820	520	DNA-binding transcriptional regulator TyrR; Provis	85.2
PRK08526	403	threonine dehydratase; Provisional	84.69
cd04919	66	ACT_AK-Hom3_2 ACT domains located C-terminal to th	83.84
PRK10622	386	pheA bifunctional chorismate mutase/prephenate deh	83.66
cd04934	73	ACT_AK-Hom3_1 CT domains located C-terminal to the	83.34
cd04937	64	ACT_AKi-DapG-BS_2 ACT domains of the diaminopimela	83.17
cd04890	62	ACT_AK-like_1 ACT domains found C-terminal to the	83.06
KOG2663	309	consensus Acetolactate synthase, small subunit [Am	82.93
PRK08526	403	threonine dehydratase; Provisional	82.83
cd04913	75	ACT_AKii-LysC-BS-like_1 ACT domains of the lysine-	82.59
cd04891	61	ACT_AK-LysC-DapG-like_1 ACT domains of the lysine-	82.46
cd04921	80	ACT_AKi-HSDH-ThrA-like_1 ACT domains of the bifunc	81.08
PRK00907	92	hypothetical protein; Provisional	80.08

>PRK05007 PII uridylyl-transferase; Provisional

Probab=100.00  E-value=2.5e-33  Score=267.89  Aligned_cols=190  Identities=24%  Similarity=0.308  Sum_probs=167.4

Q ss_pred             CCEEEEeecCCCCeEEEEEEeCCcccHHHHHHHHHHHCCceEEEEEEEecCC-eeEEEEEEeeCCCCCCCCCHHHHHHHH
Q 028501            1 MPHVLIDQDSNSDATIVQLSFGDRLGALIDTMNALKDLGLDVAKGTVNTEGS-VKQTKFFITRLDTGRKVEDPDLLERIR   79 (208)
Q Consensus         1 ~p~V~~~~~~~~~~~~v~v~~~DrpGLl~~i~~~L~~~gl~I~~a~i~t~~~-~~~d~F~v~~~~~g~~~~~~~~~~~l~   79 (208)
                      .|.|.+++....+.++|+|+++||||||++||++|+.+|++|++|+|+|+++ .++|+|+|++.+ |.++. ++++++|+
T Consensus       688 ~p~V~i~~~~~~~~t~V~V~a~DrpGLfa~Ia~~La~~~L~I~~A~I~T~~dg~alD~F~V~d~~-g~~~~-~~~~~~I~  765 (884)
T PRK05007        688 KPLVLLSKQATRGGTEIFIWSPDRPYLFAAVCAELDRRNLSVHDAQIFTSRDGMAMDTFIVLEPD-GSPLS-QDRHQVIR  765 (884)
T ss_pred             CCeEEEEecCCCCeEEEEEEecCCcCHHHHHHHHHHHCCCEEEEEEEEEcCCCeEEEEEEEECCC-CCCCC-HHHHHHHH
Confidence            4788899999999999999999999999999999999999999999999988 689999999996 88874 57889999


Q ss_pred             HHHHHhhccCCCCchhhhhccccccCCCCCcccCCccccEEEEecCCC-CeEEEEEEecCcchHHHHHHHHHHhCCccEE
Q 028501           80 LTIINNLLKYHPESSEQLAMGEAFGIKAPEKKLDVDIATHIHVKEDGP-KRSLLYIETADRPGLLVEIMKIIADVNVDVE  158 (208)
Q Consensus        80 ~~L~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~V~~~~~~~-~~~~i~v~~~Dr~GlL~~i~~~l~~~~i~I~  158 (208)
                      +.|.++|.+..+. .. .     .+ +.+++.++|.+|++|.|+|+.+ .+|+|+|.+.|||||||+|+++|.++|++|.
T Consensus       766 ~~L~~aL~~~~~~-~~-~-----~~-~~~~~~~~~~~~~~V~~d~~~s~~~TvlEV~a~DRpGLL~~I~~~l~~~~l~I~  837 (884)
T PRK05007        766 KALEQALTQSSPQ-PP-K-----PR-RLPAKLRHFNVPTEVSFLPTHTDRRSYMELIALDQPGLLARVGKIFADLGISLH  837 (884)
T ss_pred             HHHHHHHcCCCCC-cc-c-----cc-ccccccCCCCCCCEEEEccCCCCCeEEEEEEeCCchHHHHHHHHHHHHCCcEEE
Confidence            9999999763211 11 1     12 2344556889999999999875 5999999999999999999999999999999


Q ss_pred             EEEEEecCCeEEEEEEEEe-CCCCCChHHHHHHHHHHHHHcCC
Q 028501          159 SAEIDTEGLVAKDKFHVSY-GGAALNSSLSQVLVNCLRYYLRR  200 (208)
Q Consensus       159 ~a~i~t~~~~~~~~f~v~~-~g~~~~~~~~~~l~~~l~~~l~~  200 (208)
                      +|+|+|.|+++.|+|||++ +|.|++++.++.|+++|+++|+.
T Consensus       838 ~AkI~T~gera~DvFyV~~~~g~~l~~~~~~~l~~~L~~~l~~  880 (884)
T PRK05007        838 GARITTIGERVEDLFILATADRRALNEELQQELRQRLTEALNP  880 (884)
T ss_pred             EEEEeccCceEEEEEEEEcCCCCcCCHHHHHHHHHHHHHHHhh
Confidence            9999999999999999998 89999987889999999999854

>PRK01759 glnD PII uridylyl-transferase; Provisional

Probab=100.00  E-value=4.4e-33  Score=265.36  Aligned_cols=188  Identities=18%  Similarity=0.267  Sum_probs=164.6

Q ss_pred             CCEEEEeecCCCCeEEEEEEeCCcccHHHHHHHHHHHCCceEEEEEEEe-cCCeeEEEEEEeeCCCCCCCCCHHHHHHHH
Q 028501            1 MPHVLIDQDSNSDATIVQLSFGDRLGALIDTMNALKDLGLDVAKGTVNT-EGSVKQTKFFITRLDTGRKVEDPDLLERIR   79 (208)
Q Consensus         1 ~p~V~~~~~~~~~~~~v~v~~~DrpGLl~~i~~~L~~~gl~I~~a~i~t-~~~~~~d~F~v~~~~~g~~~~~~~~~~~l~   79 (208)
                      .|.|.+++..+.+.++|+|+++||||||++|+++|+.+|++|++|+|+| .++.++|+|+|++.+ |.++. ++++++|+
T Consensus       664 ~~~V~i~~~~~~~~t~V~V~~~DrpGLfa~Ia~~L~~~~L~I~~A~I~T~~~g~alD~F~V~d~~-g~~~~-~~~~~~l~  741 (854)
T PRK01759        664 DLLVKISNRFSRGGTEIFIYCQDQANLFLKVVSTIGAKKLSIHDAQIITSQDGYVLDSFIVTELN-GKLLE-FDRRRQLE  741 (854)
T ss_pred             CCEEEEEecCCCCeEEEEEEecCCccHHHHHHHHHHHCCCeEEEEEEEEccCCEEEEEEEEeCCC-CCCCC-HHHHHHHH
Confidence            4788899999999999999999999999999999999999999999999 566799999999996 98884 57889999


Q ss_pred             HHHHHhhccCCCCchhhhhccccccCCCCCcccCCccccEEEEecCCC-CeEEEEEEecCcchHHHHHHHHHHhCCccEE
Q 028501           80 LTIINNLLKYHPESSEQLAMGEAFGIKAPEKKLDVDIATHIHVKEDGP-KRSLLYIETADRPGLLVEIMKIIADVNVDVE  158 (208)
Q Consensus        80 ~~L~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~V~~~~~~~-~~~~i~v~~~Dr~GlL~~i~~~l~~~~i~I~  158 (208)
                      +.|.++|.+.. ...        ..++.+++.++|.+|++|.|+|+.+ .+|+|+|.+.|||||||+|+++|.++|++|+
T Consensus       742 ~~L~~aL~~~~-~~~--------~~~~~~~~~~~~~~~~~V~~dn~~s~~~T~iev~a~DrpGLL~~I~~~l~~~~l~i~  812 (854)
T PRK01759        742 QALTKALNTNK-LKK--------LNLEENHKLQHFHVKTEVRFLNEEKQEQTEMELFALDRAGLLAQVSQVFSELNLNLL  812 (854)
T ss_pred             HHHHHHHcCCC-Ccc--------hhccccccccCCCCCCEEEEccCCCCCeEEEEEEeCCchHHHHHHHHHHHHCCCEEE
Confidence            99999997632 110        0111223445788999999999876 4999999999999999999999999999999


Q ss_pred             EEEEEecCCeEEEEEEEEe-CCCCCChHHHHHHHHHHHHHcC
Q 028501          159 SAEIDTEGLVAKDKFHVSY-GGAALNSSLSQVLVNCLRYYLR  199 (208)
Q Consensus       159 ~a~i~t~~~~~~~~f~v~~-~g~~~~~~~~~~l~~~l~~~l~  199 (208)
                      .|+|+|.|+++.|+|||++ +|.|++++.++.|+++|+++|.
T Consensus       813 ~AkI~T~gerv~D~Fyv~~~~g~~l~~~~~~~l~~~L~~~l~  854 (854)
T PRK01759        813 NAKITTIGEKAEDFFILTNQQGQALDEEERKALKSRLLSNLS  854 (854)
T ss_pred             EEEEcccCceEEEEEEEECCCCCcCChHHHHHHHHHHHHHhC
Confidence            9999999999999999998 8999998877999999998874

>TIGR01693 UTase_glnD [Protein-PII] uridylyltransferase

Probab=99.98  E-value=1.5e-30  Score=248.74  Aligned_cols=191  Identities=23%  Similarity=0.321  Sum_probs=165.0

Q ss_pred             CCEEEEeecCCCCeEEEEEEeCCcccHHHHHHHHHHHCCceEEEEEEEec-CCeeEEEEEEeeCCCCCCCCCHHHHHHHH
Q 028501            1 MPHVLIDQDSNSDATIVQLSFGDRLGALIDTMNALKDLGLDVAKGTVNTE-GSVKQTKFFITRLDTGRKVEDPDLLERIR   79 (208)
Q Consensus         1 ~p~V~~~~~~~~~~~~v~v~~~DrpGLl~~i~~~L~~~gl~I~~a~i~t~-~~~~~d~F~v~~~~~g~~~~~~~~~~~l~   79 (208)
                      .|.|.+.+....+.++|+|+++||||||++||++|+.+|+||++|+|+|+ ++.++|+|+|++.+ |.++.+++++++|+
T Consensus       655 ~~~v~~~~~~~~~~t~i~V~~~DrpgLla~i~~~L~~~~l~I~~A~I~tt~~g~~lD~F~V~~~~-g~~~~~~~~~~~i~  733 (850)
T TIGR01693       655 GPLALIDGTRPSGGTEVFIYAPDQPGLFAKVAGALAMLSLSVHDAQVNTTKDGVALDTFVVQDLF-GSPPAAERVFQELL  733 (850)
T ss_pred             CCEEEEeccCCCCeEEEEEEeCCCCcHHHHHHHHHHHCCCeEEEEEEEEecCCEEEEEEEEECCC-CCCCCcHHHHHHHH
Confidence            37888888777899999999999999999999999999999999999955 56789999999997 88887777899999


Q ss_pred             HHHHHhhccCCCCchhhhhccccccCC-CCCcccCCccccEEEEecCCC-CeEEEEEEecCcchHHHHHHHHHHhCCccE
Q 028501           80 LTIINNLLKYHPESSEQLAMGEAFGIK-APEKKLDVDIATHIHVKEDGP-KRSLLYIETADRPGLLVEIMKIIADVNVDV  157 (208)
Q Consensus        80 ~~L~~~l~~~~~~~~~~l~~~~~~~~~-~~~~~~~~~~~~~V~~~~~~~-~~~~i~v~~~Dr~GlL~~i~~~l~~~~i~I  157 (208)
                      +.|.++|.+... ....+.     .++ .+++.++|.+|++|.|+|+.+ .+|+++|.|.||||||++|+++|+++|++|
T Consensus       734 ~~L~~~L~~~~~-~~~~~~-----~~~~~~~~~~~~~~~~~V~~d~~~s~~~t~~~v~~~DrpGll~~i~~~l~~~~~~i  807 (850)
T TIGR01693       734 QGLVDVLAGLAK-DPDTIS-----ARRARRRRLQHFAVPPRVTILNTASRKATIMEVRALDRPGLLARVGRTLEELGLSI  807 (850)
T ss_pred             HHHHHHHcCCCc-cccccc-----cccCCcccccCCCCCCeEEEccCCCCCeEEEEEEECCccHHHHHHHHHHHHCCCeE
Confidence            999999976321 111111     111 234456788999999999875 599999999999999999999999999999


Q ss_pred             EEEEEEecCCeEEEEEEEEe-CCCCCChHHHHHHHHHHHHHc
Q 028501          158 ESAEIDTEGLVAKDKFHVSY-GGAALNSSLSQVLVNCLRYYL  198 (208)
Q Consensus       158 ~~a~i~t~~~~~~~~f~v~~-~g~~~~~~~~~~l~~~l~~~l  198 (208)
                      .++++.|.|+++.|+|++++ .|.|++++.++.|+++|..+|
T Consensus       808 ~~a~i~t~~~~~~d~F~v~~~~g~~~~~~~~~~l~~~L~~~l  849 (850)
T TIGR01693       808 QSAKITTFGEKAEDVFYVTDLFGLKLTDEEEQRLLEVLAASV  849 (850)
T ss_pred             EEEEEEecCccceeEEEEECCCCCCCCHHHHHHHHHHHHHHh
Confidence            99999999999999999998 899999988899999998876

This model describes GlnD, the uridylyltransferase/uridylyl-removing enzyme for the nitrogen regulatory protein PII. Not all homologs of PII share the property of uridylyltransferase modification on the characteristic Tyr residue (see Prosite pattern PS00496 and document PDOC00439), but the modification site is preserved in the PII homolog of all species with a member of this family.

>COG2844 GlnD UTP:GlnB (protein PII) uridylyltransferase [Posttranslational modification, protein turnover, chaperones]

Probab=99.97  E-value=8.1e-30  Score=234.19  Aligned_cols=190  Identities=28%  Similarity=0.335  Sum_probs=168.8

Q ss_pred             CCEEEEeecCCCCeEEEEEEeCCcccHHHHHHHHHHHCCceEEEEEEEecCCe-eEEEEEEeeCCCCCCCCCHHHHHHHH
Q 028501            1 MPHVLIDQDSNSDATIVQLSFGDRLGALIDTMNALKDLGLDVAKGTVNTEGSV-KQTKFFITRLDTGRKVEDPDLLERIR   79 (208)
Q Consensus         1 ~p~V~~~~~~~~~~~~v~v~~~DrpGLl~~i~~~L~~~gl~I~~a~i~t~~~~-~~d~F~v~~~~~g~~~~~~~~~~~l~   79 (208)
                      +|+|.+......+.++|+|+++|+|.||+.+|+++...|+||++|+|+|+.++ ++|+|+|++++ |.++. +++...++
T Consensus       671 ~~Lv~~~~r~~~~~teV~V~a~d~p~Lfa~v~~~~~~~g~~i~dAqi~tt~dG~alDtfiv~~~~-g~~~~-~dr~~~~~  748 (867)
T COG2844         671 KPLVLISVRPHSGGTEVFVYAPDRPRLFAVVCAALSRRGLSIVDAQIFTTRDGYALDTFIVLEPD-GFPVE-EDRRAALR  748 (867)
T ss_pred             CcceeeeecccCCceEEEEEcCCCccHHHHHHHHHccCCCceeeeEEEEccCCceeeeEEEecCC-CCccc-hhHHHHHH
Confidence            57888888888899999999999999999999999999999999999999886 89999999996 88776 67888888


Q ss_pred             HHHHHhhccCCCCchhhhhccccccCCCCCcccCCccccEEEEecCCCC-eEEEEEEecCcchHHHHHHHHHHhCCccEE
Q 028501           80 LTIINNLLKYHPESSEQLAMGEAFGIKAPEKKLDVDIATHIHVKEDGPK-RSLLYIETADRPGLLVEIMKIIADVNVDVE  158 (208)
Q Consensus        80 ~~L~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~V~~~~~~~~-~~~i~v~~~Dr~GlL~~i~~~l~~~~i~I~  158 (208)
                      ..|.+++.++..  .+  +    .+++.+++.++|+++|+|.|.+..++ .++|+|.+.||||||++++++|++++++|.
T Consensus       749 ~~l~~~l~s~~~--~~--~----~~~r~~r~~~~f~i~p~v~i~~t~~~~~t~lEv~alDRpGLLa~v~~v~~dl~l~i~  820 (867)
T COG2844         749 GELIEALLSGKA--QP--P----RRRRIPRKLRHFPIPPRVTILPTASNDKTVLEVRALDRPGLLAALAGVFADLGLSLH  820 (867)
T ss_pred             HHHHHHHhcCCC--CC--c----cccccCcccceeccCCceeeccccCCCceEEEEEeCCcccHHHHHHHHHHhccccee
Confidence            888888876422  11  1    34566777789999999999998765 999999999999999999999999999999


Q ss_pred             EEEEEecCCeEEEEEEEEe-CCCCCChHHHHHHHHHHHHHcCC
Q 028501          159 SAEIDTEGLVAKDKFHVSY-GGAALNSSLSQVLVNCLRYYLRR  200 (208)
Q Consensus       159 ~a~i~t~~~~~~~~f~v~~-~g~~~~~~~~~~l~~~l~~~l~~  200 (208)
                      +|+|+|.|++++|+|+|++ .|.+++++.++.+.+.|.+++..
T Consensus       821 ~AkItT~GErveD~F~vt~~~~~~l~~~~~q~l~~~ll~al~~  863 (867)
T COG2844         821 SAKITTFGERVEDVFIVTDADGQALNAELRQSLLQRLLEALLP  863 (867)
T ss_pred             eeeeccccccceeEEEEeccccccCCHHHHHHHHHHHHHHhcc
Confidence            9999999999999999998 89999999999999999888754

>PRK00275 glnD PII uridylyl-transferase; Provisional

Probab=99.97  E-value=3.8e-29  Score=239.25  Aligned_cols=194  Identities=22%  Similarity=0.354  Sum_probs=164.3

Q ss_pred             CEEEEeecCC---CCeEEEEEEeCCcccHHHHHHHHHHHCCceEEEEEEEecCC-eeEEEEEEeeCCCCCCCC-CHHHHH
Q 028501            2 PHVLIDQDSN---SDATIVQLSFGDRLGALIDTMNALKDLGLDVAKGTVNTEGS-VKQTKFFITRLDTGRKVE-DPDLLE   76 (208)
Q Consensus         2 p~V~~~~~~~---~~~~~v~v~~~DrpGLl~~i~~~L~~~gl~I~~a~i~t~~~-~~~d~F~v~~~~~g~~~~-~~~~~~   76 (208)
                      |.|.+.+...   .+.++|+|+++||||||+++|++|+.+|+||++|+|+|+++ +++|+|+|++.+ |.++. ++++++
T Consensus       689 ~~v~~~~~~~~~~~~~t~V~V~~~DrpgLFa~i~g~L~~~~lnI~~A~I~Tt~dg~alD~F~V~d~~-g~~~~~~~~r~~  767 (895)
T PRK00275        689 PLVLIKETTQREFEGGTQIFIYAPDQHDFFAATVAAMDQLNLNIHDARIITSSSQFTLDTYIVLDDD-GEPIGDNPARIE  767 (895)
T ss_pred             CeEEEEecCccCCCCeEEEEEEeCCCCcHHHHHHHHHHHCCCeEEEEEEEEcCCCeEEEEEEEeCCC-CCCccchHHHHH
Confidence            6677766665   58899999999999999999999999999999999998876 578999999997 88753 457899


Q ss_pred             HHHHHHHHhhccCCCCchhhhhccccccCCCCCcccCCccccEEEEecCCC-CeEEEEEEecCcchHHHHHHHHHHhCCc
Q 028501           77 RIRLTIINNLLKYHPESSEQLAMGEAFGIKAPEKKLDVDIATHIHVKEDGP-KRSLLYIETADRPGLLVEIMKIIADVNV  155 (208)
Q Consensus        77 ~l~~~L~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~V~~~~~~~-~~~~i~v~~~Dr~GlL~~i~~~l~~~~i  155 (208)
                      +|++.|.++|.+.. .....+      .++.++..++|.+++.|.|+++.+ .+|+|+|.+.||||||++|+++|+.+|+
T Consensus       768 ~i~~~L~~~L~~~~-~~~~~~------~~~~~~~~~~~~~~~~V~i~~~~~~~~T~i~V~a~DrpGLLa~I~~~L~~~~l  840 (895)
T PRK00275        768 QIREGLTEALRNPD-DYPTII------QRRVPRQLKHFAFPTQVTISNDAQRPVTVLEIIAPDRPGLLARIGRIFLEFDL  840 (895)
T ss_pred             HHHHHHHHHHcCCC-ccchhh------hhhhhhhccCCCCCCEEEEEECCCCCeEEEEEEECCCCCHHHHHHHHHHHCCC
Confidence            99999999997632 111122      123344556788999999998764 6999999999999999999999999999


Q ss_pred             cEEEEEEEecCCeEEEEEEEEe-CCCCCChH-HHHHHHHHHHHHcCCCCC
Q 028501          156 DVESAEIDTEGLVAKDKFHVSY-GGAALNSS-LSQVLVNCLRYYLRRPET  203 (208)
Q Consensus       156 ~I~~a~i~t~~~~~~~~f~v~~-~g~~~~~~-~~~~l~~~l~~~l~~~~~  203 (208)
                      ||.+|+|.|.++++.|+|+|++ +|.+++++ .++.|+++|..+|..+..
T Consensus       841 ~I~~AkI~T~g~~v~D~F~V~d~~g~~l~~~~~~~~l~~~L~~~L~~~~~  890 (895)
T PRK00275        841 SLQNAKIATLGERVEDVFFITDADNQPLSDPQLCSRLQDAICEQLDARNE  890 (895)
T ss_pred             EEEEeEEEecCCEEEEEEEEECCCCCCCCCHHHHHHHHHHHHHHHhcccc
Confidence            9999999999999999999998 89999774 678999999999966543

>PRK04374 PII uridylyl-transferase; Provisional

Probab=99.97  E-value=1.5e-28  Score=234.09  Aligned_cols=188  Identities=21%  Similarity=0.232  Sum_probs=158.7

Q ss_pred             CEEEEee-cCCCCeEEEEEEeCCcccHHHHHHHHHHHCCceEEEEEEEecCC-eeEEEEEEeeCCCCCCCCCHHHHHHHH
Q 028501            2 PHVLIDQ-DSNSDATIVQLSFGDRLGALIDTMNALKDLGLDVAKGTVNTEGS-VKQTKFFITRLDTGRKVEDPDLLERIR   79 (208)
Q Consensus         2 p~V~~~~-~~~~~~~~v~v~~~DrpGLl~~i~~~L~~~gl~I~~a~i~t~~~-~~~d~F~v~~~~~g~~~~~~~~~~~l~   79 (208)
                      |.|.+.. ....+.++|+|+++|+||||++||++|+.+|+||++|+|+|+.+ .++|+|+|.+++ |..   +.++.+++
T Consensus       677 ~~v~~~~~~~~~~~~~v~v~~~d~~gLFa~i~g~l~~~~lnI~~A~i~t~~~g~~ld~f~V~~~~-~~~---~~~~~~i~  752 (869)
T PRK04374        677 TLVKARRAVPDNDALEVFVYSPDRDGLFAAIVATLDRKGYGIHRARVLDAPHDAIFDVFEVLPQD-TYA---DGDPQRLA  752 (869)
T ss_pred             CeEEEeeeccCCCeEEEEEEeCCCccHHHHHHHHHHHCCCeEEEEEEEEcCCCEEEEEEEEeCCC-CCC---hHHHHHHH
Confidence            5565544 66778999999999999999999999999999999999999765 589999999986 663   35678899


Q ss_pred             HHHHHhhccCCCCchhhhhccccccCCCCCcccCCccccEEEEecCCC-CeEEEEEEecCcchHHHHHHHHHHhCCccEE
Q 028501           80 LTIINNLLKYHPESSEQLAMGEAFGIKAPEKKLDVDIATHIHVKEDGP-KRSLLYIETADRPGLLVEIMKIIADVNVDVE  158 (208)
Q Consensus        80 ~~L~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~V~~~~~~~-~~~~i~v~~~Dr~GlL~~i~~~l~~~~i~I~  158 (208)
                      +.|.++|.+.. ... .+.     .++.+++.++|.+||+|.|+++.+ .+++|+|.+.||||||++|+++|+.+|+||.
T Consensus       753 ~~l~~~l~~~~-~~~-~~~-----~~~~~~~~~~~~~~~~V~~~~~~~~~~t~leI~a~DrpGLLa~Ia~~l~~~~l~I~  825 (869)
T PRK04374        753 AALRQVLAGDL-QKV-RPA-----RRAVPRQLRHFRFAPRVEFSESAGGRRTRISLVAPDRPGLLADVAHVLRMQHLRVH  825 (869)
T ss_pred             HHHHHHHcCCC-Ccc-ccc-----cccCcccccCCCCCCeEEEeecCCCCeEEEEEEeCCcCcHHHHHHHHHHHCCCeEE
Confidence            99999997631 111 121     222344556899999999998764 6999999999999999999999999999999


Q ss_pred             EEEEEecCCeEEEEEEEEe-CCCCCChHHHHHHHHHHHHHcCC
Q 028501          159 SAEIDTEGLVAKDKFHVSY-GGAALNSSLSQVLVNCLRYYLRR  200 (208)
Q Consensus       159 ~a~i~t~~~~~~~~f~v~~-~g~~~~~~~~~~l~~~l~~~l~~  200 (208)
                      +|+|+|.++++.|+|+|++ +|.+++++.++.|+++|+++|+.
T Consensus       826 ~AkI~T~g~~a~D~F~V~d~~g~~~~~~~~~~l~~~L~~~l~~  868 (869)
T PRK04374        826 DARIATFGERAEDQFQITDEHDRPLSESARQALRDALCACLDP  868 (869)
T ss_pred             EeEEEecCCEEEEEEEEECCCCCcCChHHHHHHHHHHHHHhcc
Confidence            9999999999999999998 78998887679999999998853

>PRK05092 PII uridylyl-transferase; Provisional

Probab=99.97  E-value=3.4e-28  Score=234.16  Aligned_cols=196  Identities=21%  Similarity=0.307  Sum_probs=165.6

Q ss_pred             CEEEEeecCCCCeEEEEEEeCCcccHHHHHHHHHHHCCceEEEEEEEecCC-eeEEEEEEeeCCCCCCCCCHHHHHHHHH
Q 028501            2 PHVLIDQDSNSDATIVQLSFGDRLGALIDTMNALKDLGLDVAKGTVNTEGS-VKQTKFFITRLDTGRKVEDPDLLERIRL   80 (208)
Q Consensus         2 p~V~~~~~~~~~~~~v~v~~~DrpGLl~~i~~~L~~~gl~I~~a~i~t~~~-~~~d~F~v~~~~~g~~~~~~~~~~~l~~   80 (208)
                      +.|.+.+....+.++|+|+++||||||++||++|+.+|+||.+|+|+|+.+ .++|+|+|++.+ |.+..+++++++|++
T Consensus       720 ~~v~~~~~~~~~~t~v~I~~~Dr~GLfa~i~~~L~~~glnI~~A~I~t~~dg~alD~F~V~~~~-g~~~~~~~~~~~l~~  798 (931)
T PRK05092        720 LATEVRPDPARGVTEVTVLAADHPGLFSRIAGACAAAGANIVDARIFTTTDGRALDTFWIQDAF-GRDEDEPRRLARLAK  798 (931)
T ss_pred             cEEEEEecCCCCeEEEEEEeCCCCcHHHHHHHHHHHCCCcEEEEEEEEecCCeEEEEEEEECCC-CCCCCCHHHHHHHHH
Confidence            567788888889999999999999999999999999999999999999655 579999999986 887767789999999


Q ss_pred             HHHHhhccCCCCchhhhhccccccCCCC-CcccCCccccEEEEecCCC-CeEEEEEEecCcchHHHHHHHHHHhCCccEE
Q 028501           81 TIINNLLKYHPESSEQLAMGEAFGIKAP-EKKLDVDIATHIHVKEDGP-KRSLLYIETADRPGLLVEIMKIIADVNVDVE  158 (208)
Q Consensus        81 ~L~~~l~~~~~~~~~~l~~~~~~~~~~~-~~~~~~~~~~~V~~~~~~~-~~~~i~v~~~Dr~GlL~~i~~~l~~~~i~I~  158 (208)
                      .|..++.+.. .....+.     .+..+ ++.++|.++|.|.|+++.+ .+++|+|.+.||||||++|+++|+++|+||.
T Consensus       799 ~L~~~l~~~~-~~~~~~~-----~r~~~~~~~~~~~~~~~V~~~~~~s~~~t~i~I~~~DrpGLl~~I~~~l~~~gl~I~  872 (931)
T PRK05092        799 AIEDALSGEV-RLPEALA-----KRTKPKKRARAFHVPPRVTIDNEASNRFTVIEVNGRDRPGLLYDLTRALSDLNLNIA  872 (931)
T ss_pred             HHHHHHcCCC-CCccccc-----cccCccccccCCCCCCEEEEeeCCCCCeEEEEEEECCcCcHHHHHHHHHHHCCceEE
Confidence            9999886521 1111211     11122 2345788999999999865 5899999999999999999999999999999


Q ss_pred             EEEEEecCCeEEEEEEEEe-CCCCCChH-HHHHHHHHHHHHcCCCCCC
Q 028501          159 SAEIDTEGLVAKDKFHVSY-GGAALNSS-LSQVLVNCLRYYLRRPETD  204 (208)
Q Consensus       159 ~a~i~t~~~~~~~~f~v~~-~g~~~~~~-~~~~l~~~l~~~l~~~~~~  204 (208)
                      +|+|.|.++++.|+|+|++ +|.++.++ .++.|+++|.++|..+..+
T Consensus       873 ~A~I~T~~~~~~D~F~v~d~~g~~i~~~~~~~~l~~~L~~~L~~~~~~  920 (931)
T PRK05092        873 SAHIATYGERAVDVFYVTDLFGLKITNEARQAAIRRALLAALAEGEAE  920 (931)
T ss_pred             EEEEEEcCCEEEEEEEEeCCCCCcCCCHHHHHHHHHHHHHHhcCcccc
Confidence            9999999999999999998 89999875 6789999999999765544

>PRK03381 PII uridylyl-transferase; Provisional

Probab=99.96  E-value=1.2e-27  Score=226.11  Aligned_cols=184  Identities=21%  Similarity=0.215  Sum_probs=153.9

Q ss_pred             CCEEEEeecCCCCeEEEEEEeCCcccHHHHHHHHHHHCCceEEEEEEEecCCeeEEEEEEeeCCCCCCCCCHHHHHHHHH
Q 028501            1 MPHVLIDQDSNSDATIVQLSFGDRLGALIDTMNALKDLGLDVAKGTVNTEGSVKQTKFFITRLDTGRKVEDPDLLERIRL   80 (208)
Q Consensus         1 ~p~V~~~~~~~~~~~~v~v~~~DrpGLl~~i~~~L~~~gl~I~~a~i~t~~~~~~d~F~v~~~~~g~~~~~~~~~~~l~~   80 (208)
                      .|.|.+.+.. .+.++|+|+++||||||++||++|+.+||||++|+|+|.++.++|+|+|.+++ |.+.    .++++++
T Consensus       587 ~~~v~~~~~~-~~~~~V~V~~~DrpGLfa~i~~vL~~~glnI~dA~i~t~dg~~ld~F~V~~~~-~~~~----~~~~l~~  660 (774)
T PRK03381        587 GVHVEIAPAD-PHMVEVTVVAPDRRGLLSKAAGVLALHRLRVRSASVRSHDGVAVLEFVVSPRF-GSPP----DAALLRQ  660 (774)
T ss_pred             CCEEEEeeCC-CCeEEEEEEecCCccHHHHHHHHHHHCCCeEEEeEEEecCCEEEEEEEEECCC-CCcc----hHHHHHH
Confidence            4778888877 89999999999999999999999999999999999999777899999999886 7643    3588999


Q ss_pred             HHHHhhccCCCCchhhhhccccccCC-CCCcccCCccccEEEEecCCC-CeEEEEEEecCcchHHHHHHHHHHhCCccEE
Q 028501           81 TIINNLLKYHPESSEQLAMGEAFGIK-APEKKLDVDIATHIHVKEDGP-KRSLLYIETADRPGLLVEIMKIIADVNVDVE  158 (208)
Q Consensus        81 ~L~~~l~~~~~~~~~~l~~~~~~~~~-~~~~~~~~~~~~~V~~~~~~~-~~~~i~v~~~Dr~GlL~~i~~~l~~~~i~I~  158 (208)
                      .|++++.+.. .....+..+   .+. .+++.++|..|+.|.++++.+ .+++|+|.+.||||||++|+++|+++|+||.
T Consensus       661 ~L~~~L~~~~-~~~~~~~~~---~~~~~~~~~~~~~~~~~v~~~~~~~~~~t~i~V~a~DrpGLla~Ia~~L~~~~lnI~  736 (774)
T PRK03381        661 DLRRALDGDL-DVLARLAAR---EAAAAAVPVRRPAAPPRVLWLDGASPDATVLEVRAADRPGLLARLARALERAGVDVR  736 (774)
T ss_pred             HHHHHHcCCC-chhhhhhcc---cccccccccccCCCCcEEEEEECCCCCeEEEEEEeCCchhHHHHHHHHHHHCCCeEE
Confidence            9999887631 111122110   011 123445788999999988764 5899999999999999999999999999999


Q ss_pred             EEEEEecCCeEEEEEEEEe-CCCCCChHHHHHHHHHHH
Q 028501          159 SAEIDTEGLVAKDKFHVSY-GGAALNSSLSQVLVNCLR  195 (208)
Q Consensus       159 ~a~i~t~~~~~~~~f~v~~-~g~~~~~~~~~~l~~~l~  195 (208)
                      +|+|.|.|+++.|+|+|++ +|.+++++ ++.|+++|+
T Consensus       737 ~AkI~T~g~~a~D~F~V~d~~g~~~~~~-~~~l~~~L~  773 (774)
T PRK03381        737 WARVATLGADVVDVFYVTGAAGGPLADA-RAAVEQAVL  773 (774)
T ss_pred             EEEEeecCCeEEEEEEEECCCCCcCchH-HHHHHHHhh
Confidence            9999999999999999998 89999988 888888875

>PRK03059 PII uridylyl-transferase; Provisional

Probab=99.96  E-value=2.3e-27  Score=226.17  Aligned_cols=188  Identities=19%  Similarity=0.247  Sum_probs=156.9

Q ss_pred             CCEEEEeecCCCCeEEEEEEeCCcccHHHHHHHHHHHCCceEEEEEEEecCC-eeEEEEEEeeCCCCCCCCCHHHHHHHH
Q 028501            1 MPHVLIDQDSNSDATIVQLSFGDRLGALIDTMNALKDLGLDVAKGTVNTEGS-VKQTKFFITRLDTGRKVEDPDLLERIR   79 (208)
Q Consensus         1 ~p~V~~~~~~~~~~~~v~v~~~DrpGLl~~i~~~L~~~gl~I~~a~i~t~~~-~~~d~F~v~~~~~g~~~~~~~~~~~l~   79 (208)
                      .|.|.+.+....+.++|+|+++||||||+++|++|+.+|+||++|+|+|+.+ .++|+|+|.+++ |. ..+++++++++
T Consensus       665 ~~~v~~~~~~~~~~~~v~i~~~d~~gLFa~i~g~l~~~~l~I~~A~i~t~~~g~~ld~f~V~~~~-~~-~~~~~~~~~i~  742 (856)
T PRK03059        665 TPIVRARLSPAGEGLQVMVYTPDQPDLFARICGYFDRAGFSILDARVHTTRHGYALDTFQVLDPE-ED-VHYRDIINLVE  742 (856)
T ss_pred             CCeEEEEecCCCCeEEEEEEecCCCcHHHHHHHHHHHCCCceeeeEEEEcCCCeEEEEEEEeCCC-CC-CChHHHHHHHH
Confidence            3677788888889999999999999999999999999999999999998766 579999999985 66 45568899999


Q ss_pred             HHHHHhhccCCCCchhhhhccccccCCCCCcccCCccccEEEEecCC-CCeEEEEEEecCcchHHHHHHHHHHhCCccEE
Q 028501           80 LTIINNLLKYHPESSEQLAMGEAFGIKAPEKKLDVDIATHIHVKEDG-PKRSLLYIETADRPGLLVEIMKIIADVNVDVE  158 (208)
Q Consensus        80 ~~L~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~V~~~~~~-~~~~~i~v~~~Dr~GlL~~i~~~l~~~~i~I~  158 (208)
                      +.|.++|.+.. .....+      .++.+++.++|..++.|.|+++. ..++.|+|.+.||||||++|+.+|+.+|+||.
T Consensus       743 ~~l~~~l~~~~-~~~~~~------~~~~~~~~~~~~~~~~V~~~~~~~~~~T~i~V~a~DrpGLLa~Ia~~L~~~~l~I~  815 (856)
T PRK03059        743 HELAERLAEQA-PLPEPS------KGRLSRQVKHFPITPRVDLRPDERGQYYILSVSANDRPGLLYAIARVLAEHRVSVH  815 (856)
T ss_pred             HHHHHHHcCCC-Ccchhh------cccccccccCCCCCceEEEEEcCCCCEEEEEEEeCCcchHHHHHHHHHHHCCCeEE
Confidence            99999997632 111111      12234455689999999998775 46999999999999999999999999999999


Q ss_pred             EEEEEecCCeEEEEEEEEeCCCCCCh-HHHHHHHHHHHHHcC
Q 028501          159 SAEIDTEGLVAKDKFHVSYGGAALNS-SLSQVLVNCLRYYLR  199 (208)
Q Consensus       159 ~a~i~t~~~~~~~~f~v~~~g~~~~~-~~~~~l~~~l~~~l~  199 (208)
                      +|+|.|.++++.|+|+|++  .++.+ +.++.|+++|..+|+
T Consensus       816 ~AkI~T~~~~v~DvF~V~~--~~~~~~~~~~~l~~~L~~~L~  855 (856)
T PRK03059        816 TAKINTLGERVEDTFLIDG--SGLSDNRLQIQLETELLDALA  855 (856)
T ss_pred             EEEEeecCCEEEEEEEEcC--CCCCCHHHHHHHHHHHHHHhc
Confidence            9999999999999999954  33334 567899999988875

>cd04897 ACT_ACR_3 ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein)

Probab=99.83  E-value=4.9e-20  Score=125.56  Aligned_cols=73  Identities=27%  Similarity=0.461  Sum_probs=68.8

Q ss_pred             eEEEEEEecCcchHHHHHHHHHHhCCccEEEEEEEecCCeEEEEEEEEe-CCCCCChH-HHHHHHHHHHHHcCCC
Q 028501          129 RSLLYIETADRPGLLVEIMKIIADVNVDVESAEIDTEGLVAKDKFHVSY-GGAALNSS-LSQVLVNCLRYYLRRP  201 (208)
Q Consensus       129 ~~~i~v~~~Dr~GlL~~i~~~l~~~~i~I~~a~i~t~~~~~~~~f~v~~-~g~~~~~~-~~~~l~~~l~~~l~~~  201 (208)
                      +++|+|.|.||||||++|+++|+++|++|.+|+|+|.|+++.|+|||++ +|.|+.++ .++.|+++|.++|.|.
T Consensus         1 ~TvveV~~~DRpGLL~~i~~~l~~~~l~I~~A~I~T~gera~D~FyV~d~~g~kl~~~~~~~~l~~~L~~al~~~   75 (75)
T cd04897           1 YSVVTVQCRDRPKLLFDVVCTLTDMDYVVFHATIDTDGDDAHQEYYIRHKDGRTLSTEGERQRVIKCLEAAIERR   75 (75)
T ss_pred             CEEEEEEeCCcCcHHHHHHHHHHhCCeEEEEEEEeecCceEEEEEEEEcCCCCccCCHHHHHHHHHHHHHHHhcC
Confidence            4899999999999999999999999999999999999999999999998 89999886 6689999999998763

This CD includes the third ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products have been described (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) and are represented in this CD. Members of this CD belong to the superfamily of ACT regulatory domains.

>cd04897 ACT_ACR_3 ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein)

Probab=99.80  E-value=7.1e-19  Score=119.85  Aligned_cols=73  Identities=22%  Similarity=0.368  Sum_probs=69.6

Q ss_pred             eEEEEEEeCCcccHHHHHHHHHHHCCceEEEEEEEecCCeeEEEEEEeeCCCCCCCCCHHHHHHHHHHHHHhhc
Q 028501           14 ATIVQLSFGDRLGALIDTMNALKDLGLDVAKGTVNTEGSVKQTKFFITRLDTGRKVEDPDLLERIRLTIINNLL   87 (208)
Q Consensus        14 ~~~v~v~~~DrpGLl~~i~~~L~~~gl~I~~a~i~t~~~~~~d~F~v~~~~~g~~~~~~~~~~~l~~~L~~~l~   87 (208)
                      +|+|.|.|+||||||++|+++|+++|++|..|+|.|.|+.+.|+|||++.+ |.++.++.+.++|+++|.+++.
T Consensus         1 ~TvveV~~~DRpGLL~~i~~~l~~~~l~I~~A~I~T~gera~D~FyV~d~~-g~kl~~~~~~~~l~~~L~~al~   73 (75)
T cd04897           1 YSVVTVQCRDRPKLLFDVVCTLTDMDYVVFHATIDTDGDDAHQEYYIRHKD-GRTLSTEGERQRVIKCLEAAIE   73 (75)
T ss_pred             CEEEEEEeCCcCcHHHHHHHHHHhCCeEEEEEEEeecCceEEEEEEEEcCC-CCccCCHHHHHHHHHHHHHHHh
Confidence            479999999999999999999999999999999999999999999999997 9999999999999999998774

This CD includes the third ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products have been described (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) and are represented in this CD. Members of this CD belong to the superfamily of ACT regulatory domains.

>cd04896 ACT_ACR-like_3 ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein)

Probab=99.80  E-value=5.6e-19  Score=120.37  Aligned_cols=72  Identities=26%  Similarity=0.400  Sum_probs=67.1

Q ss_pred             EEEEEEecCcchHHHHHHHHHHhCCccEEEEEEE--ecCCeEEEEEEEEeCCCCCChH-HHHHHHHHHHHHcCCC
Q 028501          130 SLLYIETADRPGLLVEIMKIIADVNVDVESAEID--TEGLVAKDKFHVSYGGAALNSS-LSQVLVNCLRYYLRRP  201 (208)
Q Consensus       130 ~~i~v~~~Dr~GlL~~i~~~l~~~~i~I~~a~i~--t~~~~~~~~f~v~~~g~~~~~~-~~~~l~~~l~~~l~~~  201 (208)
                      |+|+|.+.|||||||+|+++|+++|++|.+|+|+  |.|+++.|+||++.+|.|+.++ .++.|+++|+++|.+|
T Consensus         1 Tvlev~a~DRpGLL~~i~~~l~~~~l~i~~AkI~~~T~Gerv~D~Fyv~~~g~kl~d~~~~~~L~~~L~~~l~~~   75 (75)
T cd04896           1 TLLQIRCVDQKGLLYDILRTSKDCNIQISYGRFSSKVKGYREVDLFIVQSDGKKIMDPKKQAALCARLREEMVCP   75 (75)
T ss_pred             CEEEEEeCCcccHHHHHHHHHHHCCeEEEEEEEecCcccCEEEEEEEEeCCCCccCCHHHHHHHHHHHHHHhcCC
Confidence            5799999999999999999999999999999999  9999999999995589999774 6799999999999887

This CD includes the third ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) have been described, however, the ACR-like sequences in this CD are distinct from those characterized. This CD includes the Oryza sativa ACR-like protein (Os05g0113000) encoded on chromosome 5 and the Arabidopsis thaliana predicted gene product, At2g39570. Members of this CD belong to the superfamily of ACT regulatory domains.

>cd04895 ACT_ACR_1 ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein)

Probab=99.79  E-value=1e-18  Score=118.23  Aligned_cols=68  Identities=26%  Similarity=0.461  Sum_probs=63.1

Q ss_pred             eEEEEEEecCcchHHHHHHHHHHhCCccEEEEEEEecCCeEEEEEEEEe-CCCCCChH-HHHHHHHHHHH
Q 028501          129 RSLLYIETADRPGLLVEIMKIIADVNVDVESAEIDTEGLVAKDKFHVSY-GGAALNSS-LSQVLVNCLRY  196 (208)
Q Consensus       129 ~~~i~v~~~Dr~GlL~~i~~~l~~~~i~I~~a~i~t~~~~~~~~f~v~~-~g~~~~~~-~~~~l~~~l~~  196 (208)
                      +++|+|.+.||||||++|+++|+++|++|++|+|+|.|+++.|+|||++ +|.|+.++ .++.|+++|.+
T Consensus         1 ~Tviev~a~DRpGLL~~i~~~l~~~gl~I~~AkIsT~Gerv~DvFyV~d~~g~kl~d~~~~~~l~~~L~~   70 (72)
T cd04895           1 CTLVKVDSARKPGILLEAVQVLTDLDLCITKAYISSDGGWFMDVFHVTDQLGNKLTDDSLIAYIEKSLGT   70 (72)
T ss_pred             CEEEEEEECCcCCHHHHHHHHHHHCCcEEEEEEEeecCCeEEEEEEEECCCCCCCCCHHHHHHHHHHhcc
Confidence            4899999999999999999999999999999999999999999999998 89999874 67899988764

This CD includes the N-terminal ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products have been described (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) and are represented in this CD. Members of this CD belong to the superfamily of ACT regulatory domains.

>cd04895 ACT_ACR_1 ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein)

Probab=99.77  E-value=4.5e-18  Score=115.10  Aligned_cols=69  Identities=25%  Similarity=0.411  Sum_probs=64.6

Q ss_pred             eEEEEEEeCCcccHHHHHHHHHHHCCceEEEEEEEecCCeeEEEEEEeeCCCCCCCCCHHHHHHHHHHHH
Q 028501           14 ATIVQLSFGDRLGALIDTMNALKDLGLDVAKGTVNTEGSVKQTKFFITRLDTGRKVEDPDLLERIRLTII   83 (208)
Q Consensus        14 ~~~v~v~~~DrpGLl~~i~~~L~~~gl~I~~a~i~t~~~~~~d~F~v~~~~~g~~~~~~~~~~~l~~~L~   83 (208)
                      +|+|.|.++||||||++|+++|.++|++|+.|+|.|.|+++.|+|||++.+ |+|+.++++++.|++.|.
T Consensus         1 ~Tviev~a~DRpGLL~~i~~~l~~~gl~I~~AkIsT~Gerv~DvFyV~d~~-g~kl~d~~~~~~l~~~L~   69 (72)
T cd04895           1 CTLVKVDSARKPGILLEAVQVLTDLDLCITKAYISSDGGWFMDVFHVTDQL-GNKLTDDSLIAYIEKSLG   69 (72)
T ss_pred             CEEEEEEECCcCCHHHHHHHHHHHCCcEEEEEEEeecCCeEEEEEEEECCC-CCCCCCHHHHHHHHHHhc
Confidence            478999999999999999999999999999999999999999999999996 999988888888887764

This CD includes the N-terminal ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products have been described (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) and are represented in this CD. Members of this CD belong to the superfamily of ACT regulatory domains.

>PRK11589 gcvR glycine cleavage system transcriptional repressor; Provisional

Probab=99.76  E-value=9.2e-18  Score=134.13  Aligned_cols=138  Identities=12%  Similarity=0.166  Sum_probs=101.6

Q ss_pred             CCCeEEEEEEeCCcccHHHHHHHHHHHCCceEEEEEEEecCCeeEEEEEEeeCCCCCCCCCHHHHHHHHHHHHHhhccCC
Q 028501           11 NSDATIVQLSFGDRLGALIDTMNALKDLGLDVAKGTVNTEGSVKQTKFFITRLDTGRKVEDPDLLERIRLTIINNLLKYH   90 (208)
Q Consensus        11 ~~~~~~v~v~~~DrpGLl~~i~~~L~~~gl~I~~a~i~t~~~~~~d~F~v~~~~~g~~~~~~~~~~~l~~~L~~~l~~~~   90 (208)
                      ...+++|+++|+||||+++.++++|+++||||.+.++..+++.|.-++.|.    +.|    ..+.+++..|...-..  
T Consensus         5 m~~~lviTviG~DrpGIVa~vs~~l~~~g~NI~ds~~t~lgg~Fa~i~lvs----~~~----~~~~~le~~L~~l~~~--   74 (190)
T PRK11589          5 SQHYLVITALGADRPGIVNTITRHVSSCGCNIEDSRLAMLGEEFTFIMLLS----GSW----NAITLIESTLPLKGAE--   74 (190)
T ss_pred             cccEEEEEEEcCCCChHHHHHHHHHHHcCCCeeehhhHhhCCceEEEEEEe----CCh----hHHHHHHHHHHhhhhh--
Confidence            346789999999999999999999999999999999999999987667774    443    4567777777662211  


Q ss_pred             CCchhhhhccccccCCCCCcccCCccccEEEEecCCCCeEEEEEEecCcchHHHHHHHHHHhCCccEEEEEEEecCC--e
Q 028501           91 PESSEQLAMGEAFGIKAPEKKLDVDIATHIHVKEDGPKRSLLYIETADRPGLLVEIMKIIADVNVDVESAEIDTEGL--V  168 (208)
Q Consensus        91 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~V~~~~~~~~~~~i~v~~~Dr~GlL~~i~~~l~~~~i~I~~a~i~t~~~--~  168 (208)
                      ..+  .+.    .++...+..            .....++.++|.|.||||++++||++|+++|+||.+++..+++.  .
T Consensus        75 ~~L--~i~----v~~~~~~~~------------~~~~~~~~v~v~G~DrPGIV~~vT~~la~~~iNI~~L~T~~~~a~~~  136 (190)
T PRK11589         75 LDL--LIV----MKRTTARPR------------PAMPATVWVQVEVADSPHLIERFTALFDSHHMNIAELVSRTQPAEGE  136 (190)
T ss_pred             cCe--EEE----EEecccccc------------ccCCceEEEEEEECCCCCHHHHHHHHHHHcCCChhheEEeeecCCCC
Confidence            011  110    111111000            11122589999999999999999999999999999999999885  4


Q ss_pred             EEEEEEEE
Q 028501          169 AKDKFHVS  176 (208)
Q Consensus       169 ~~~~f~v~  176 (208)
                      ....|.+.
T Consensus       137 ~~~lf~~~  144 (190)
T PRK11589        137 RPAQLHIQ  144 (190)
T ss_pred             CcccEEEE
Confidence            55556555

>cd04896 ACT_ACR-like_3 ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein)

Probab=99.72  E-value=7.7e-17  Score=109.84  Aligned_cols=72  Identities=22%  Similarity=0.412  Sum_probs=66.7

Q ss_pred             EEEEEEeCCcccHHHHHHHHHHHCCceEEEEEEE--ecCCeeEEEEEEeeCCCCCCCCCHHHHHHHHHHHHHhhcc
Q 028501           15 TIVQLSFGDRLGALIDTMNALKDLGLDVAKGTVN--TEGSVKQTKFFITRLDTGRKVEDPDLLERIRLTIINNLLK   88 (208)
Q Consensus        15 ~~v~v~~~DrpGLl~~i~~~L~~~gl~I~~a~i~--t~~~~~~d~F~v~~~~~g~~~~~~~~~~~l~~~L~~~l~~   88 (208)
                      |++.|.++||||||++|+++|.++|++|..|+|.  |.|+.+.|+||| +.+ |.++.++++++.|++.|.+++..
T Consensus         1 Tvlev~a~DRpGLL~~i~~~l~~~~l~i~~AkI~~~T~Gerv~D~Fyv-~~~-g~kl~d~~~~~~L~~~L~~~l~~   74 (75)
T cd04896           1 TLLQIRCVDQKGLLYDILRTSKDCNIQISYGRFSSKVKGYREVDLFIV-QSD-GKKIMDPKKQAALCARLREEMVC   74 (75)
T ss_pred             CEEEEEeCCcccHHHHHHHHHHHCCeEEEEEEEecCcccCEEEEEEEE-eCC-CCccCCHHHHHHHHHHHHHHhcC
Confidence            5789999999999999999999999999999999  999999999999 665 88898889999999999987753

This CD includes the third ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) have been described, however, the ACR-like sequences in this CD are distinct from those characterized. This CD includes the Oryza sativa ACR-like protein (Os05g0113000) encoded on chromosome 5 and the Arabidopsis thaliana predicted gene product, At2g39570. Members of this CD belong to the superfamily of ACT regulatory domains.

>cd04925 ACT_ACR_2 ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein)

Probab=99.69  E-value=4.2e-16  Score=106.47  Aligned_cols=73  Identities=26%  Similarity=0.320  Sum_probs=65.6

Q ss_pred             EEEEEEeCCcccHHHHHHHHHHHCCceEEEEEEEecCCeeEEEEEEeeCCCCCCCCCHHHHHHHHHHHHHhhc
Q 028501           15 TIVQLSFGDRLGALIDTMNALKDLGLDVAKGTVNTEGSVKQTKFFITRLDTGRKVEDPDLLERIRLTIINNLL   87 (208)
Q Consensus        15 ~~v~v~~~DrpGLl~~i~~~L~~~gl~I~~a~i~t~~~~~~d~F~v~~~~~g~~~~~~~~~~~l~~~L~~~l~   87 (208)
                      |+|+|+++||||||++|+++|+++||||++|+++|.++.++|+|+|++++.|.++.++++++++++.|.+++.
T Consensus         1 t~~~v~~~Dr~gLl~~i~~~l~~~~lnI~~A~i~t~~~~~~d~f~V~d~~~~~~~~~~~~~~~i~~~L~~~l~   73 (74)
T cd04925           1 TAIELTGTDRPGLLSEVFAVLADLHCNVVEARAWTHNGRLACVIYVRDEETGAPIDDPIRLASIEDRLDNVLR   73 (74)
T ss_pred             CEEEEEECCCCCHHHHHHHHHHHCCCcEEEEEEEEECCEEEEEEEEEcCcCCCCCCCHHHHHHHHHHHHHHhc
Confidence            5799999999999999999999999999999999999999999999987326667778889999999988764

This CD includes the second ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products have been described (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) and are represented in this CD. Members of this CD belong to the superfamily of ACT regulatory domains.

>cd04900 ACT_UUR-like_1 ACT domain family, ACT_UUR-like_1, includes the first of two C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD and related domains

Probab=99.69  E-value=4.7e-16  Score=105.89  Aligned_cols=71  Identities=27%  Similarity=0.375  Sum_probs=63.6

Q ss_pred             EEEEEEeCCcccHHHHHHHHHHHCCceEEEEEEEecC-CeeEEEEEEeeCCCCCCCCCHHHHHHHHHHHHHhh
Q 028501           15 TIVQLSFGDRLGALIDTMNALKDLGLDVAKGTVNTEG-SVKQTKFFITRLDTGRKVEDPDLLERIRLTIINNL   86 (208)
Q Consensus        15 ~~v~v~~~DrpGLl~~i~~~L~~~gl~I~~a~i~t~~-~~~~d~F~v~~~~~g~~~~~~~~~~~l~~~L~~~l   86 (208)
                      +.|.|+++||||||++++++|+.+|+||++|+|+|.+ +.++|+|+|++.+ |.++.++++++++++.|.++|
T Consensus         2 ~~i~v~~~Dr~gLl~~i~~~l~~~~l~I~~A~i~T~~~~~v~D~F~v~~~~-~~~~~~~~~~~~l~~~L~~~l   73 (73)
T cd04900           2 TEVFIYTPDRPGLFARIAGALDQLGLNILDARIFTTRDGYALDTFVVLDPD-GEPIGERERLARIREALEDAL   73 (73)
T ss_pred             EEEEEEecCCCCHHHHHHHHHHHCCCCeEEeEEEEeCCCeEEEEEEEECCC-CCCCChHHHHHHHHHHHHhhC
Confidence            6899999999999999999999999999999999995 6789999999886 887777788899998887643

This ACT domain family, ACT_UUR-like_1, includes the first of two C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD; including those enzymes similar to the GlnD found in enteric Escherichia coli and those found in photosynthetic, nitrogen-fixing bacterium Rhodospirillum rubrum. Also included in this CD is the N-terminal ACT domain of a yet characterized Arabidopsis/Oryza predicted tyrosine kinase. Members of this CD belong to the superfamily of ACT regulatory domains.

>cd04927 ACT_ACR-like_2 Second ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein)

Probab=99.65  E-value=2.1e-15  Score=103.55  Aligned_cols=71  Identities=24%  Similarity=0.224  Sum_probs=63.3

Q ss_pred             EEEEEeCCcccHHHHHHHHHHHCCceEEEEEEEe-cCCeeEEEEEEeeCCCCCCCCCHHHHHHHHHHHHHhhcc
Q 028501           16 IVQLSFGDRLGALIDTMNALKDLGLDVAKGTVNT-EGSVKQTKFFITRLDTGRKVEDPDLLERIRLTIINNLLK   88 (208)
Q Consensus        16 ~v~v~~~DrpGLl~~i~~~L~~~gl~I~~a~i~t-~~~~~~d~F~v~~~~~g~~~~~~~~~~~l~~~L~~~l~~   88 (208)
                      .+.|+++||||||++++++|+.+|++|.+|+|+| .++.++|+|+|++.+ |. ..++++++++++.|.++|.+
T Consensus         2 ~~ei~~~Dr~gLfa~i~~~l~~~~l~I~~A~I~Tt~~~~v~D~F~V~d~~-~~-~~~~~~~~~l~~~L~~~L~~   73 (76)
T cd04927           2 LLKLFCSDRKGLLHDVTEVLYELELTIERVKVSTTPDGRVLDLFFITDAR-EL-LHTKKRREETYDYLRAVLGD   73 (76)
T ss_pred             EEEEEECCCCCHHHHHHHHHHHCCCeEEEEEEEECCCCEEEEEEEEeCCC-CC-CCCHHHHHHHHHHHHHHHch
Confidence            6899999999999999999999999999999997 566799999999885 66 55678889999999998864

This CD includes the second ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) have been described, however, the ACR-like sequences in this CD are distinct from those characterized. This CD includes the Oryza sativa ACR-like protein (Os05g0113000) encoded on chromosome 5 and the Arabidopsis thaliana predicted gene product, At2g39570. Members of this CD belong to the superfamily of ACT regulatory domains.

>COG2716 GcvR Glycine cleavage system regulatory protein [Amino acid transport and metabolism]

Probab=99.62  E-value=3.8e-15  Score=114.95  Aligned_cols=144  Identities=16%  Similarity=0.204  Sum_probs=105.9

Q ss_pred             CCeEEEEEEeCCcccHHHHHHHHHHHCCceEEEEEEEecCCeeEEEEEEeeCCCCCCCCCHHHHHHHHHHHHHhhccCCC
Q 028501           12 SDATIVQLSFGDRLGALIDTMNALKDLGLDVAKGTVNTEGSVKQTKFFITRLDTGRKVEDPDLLERIRLTIINNLLKYHP   91 (208)
Q Consensus        12 ~~~~~v~v~~~DrpGLl~~i~~~L~~~gl~I~~a~i~t~~~~~~d~F~v~~~~~g~~~~~~~~~~~l~~~L~~~l~~~~~   91 (208)
                      +++++|+++++||||+...+++...++||||.++|+...|+.+.-+..+.    |.|    +...+++..|.. +...+ 
T Consensus         3 ~~~LvItavg~d~pgl~~~lar~v~s~Gcn~leSRla~~g~~~a~i~lis----gs~----dav~~le~~l~~-l~~~~-   72 (176)
T COG2716           3 EHYLVITAVGADRPGLVNTLARAVASSGCNWLESRLAMLGEEFAGIMLIS----GSW----DAVTLLEATLPL-LGAEL-   72 (176)
T ss_pred             ccEEEEEEecCCCcHHHHHHHHHHHhcCCcchHHHHHHhhcceeEEEEEe----eCH----HHHHHHHHHhhc-ccccC-
Confidence            46789999999999999999999999999999999999999887444443    665    567788877765 43210 


Q ss_pred             CchhhhhccccccCCCCCcccCCccccEEEEecCCCCeEEEEEEecCcchHHHHHHHHHHhCCccEEEEEEEecCCe--E
Q 028501           92 ESSEQLAMGEAFGIKAPEKKLDVDIATHIHVKEDGPKRSLLYIETADRPGLLVEIMKIIADVNVDVESAEIDTEGLV--A  169 (208)
Q Consensus        92 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~V~~~~~~~~~~~i~v~~~Dr~GlL~~i~~~l~~~~i~I~~a~i~t~~~~--~  169 (208)
                      ++  .+.    ..|..++..            .....++.++|.+.||||++.++|++|..+|+||.+....++...  .
T Consensus        73 ~L--~v~----m~rt~~~~~------------~a~~~~v~v~v~a~DrpgIv~~~T~lf~~~~inie~L~~~~~~a~~s~  134 (176)
T COG2716          73 DL--LVV----MKRTGAHPT------------PANPAPVWVYVDANDRPGIVEEFTALFDGHGINIENLVSRTYPAPGSS  134 (176)
T ss_pred             Ce--EEE----EeecCCCcc------------CCCCceEEEEEEecCCccHHHHHHHHHHhcCCchhhceeeeeecCCCC
Confidence            11  110    111211100            112347899999999999999999999999999999999987643  5


Q ss_pred             EEEEEEEe-CCCCCC
Q 028501          170 KDKFHVSY-GGAALN  183 (208)
Q Consensus       170 ~~~f~v~~-~g~~~~  183 (208)
                      ...|.++- -+-|.+
T Consensus       135 ~~lfha~it~~lPa~  149 (176)
T COG2716         135 APLFHAQITARLPAN  149 (176)
T ss_pred             ccceehhhhccCCCc
Confidence            56788875 344443

>cd04925 ACT_ACR_2 ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein)

Probab=99.57  E-value=3e-14  Score=97.25  Aligned_cols=70  Identities=26%  Similarity=0.321  Sum_probs=63.6

Q ss_pred             EEEEEEecCcchHHHHHHHHHHhCCccEEEEEEEecCCeEEEEEEEEe-C-CCCCChH-HHHHHHHHHHHHcC
Q 028501          130 SLLYIETADRPGLLVEIMKIIADVNVDVESAEIDTEGLVAKDKFHVSY-G-GAALNSS-LSQVLVNCLRYYLR  199 (208)
Q Consensus       130 ~~i~v~~~Dr~GlL~~i~~~l~~~~i~I~~a~i~t~~~~~~~~f~v~~-~-g~~~~~~-~~~~l~~~l~~~l~  199 (208)
                      |+|+|.+.|||||+++|+++|+++|+||..|++.|.++.+.|+|+|++ + |.++.++ .++.|++.|..+|.
T Consensus         1 t~~~v~~~Dr~gLl~~i~~~l~~~~lnI~~A~i~t~~~~~~d~f~V~d~~~~~~~~~~~~~~~i~~~L~~~l~   73 (74)
T cd04925           1 TAIELTGTDRPGLLSEVFAVLADLHCNVVEARAWTHNGRLACVIYVRDEETGAPIDDPIRLASIEDRLDNVLR   73 (74)
T ss_pred             CEEEEEECCCCCHHHHHHHHHHHCCCcEEEEEEEEECCEEEEEEEEEcCcCCCCCCCHHHHHHHHHHHHHHhc
Confidence            579999999999999999999999999999999999999999999997 5 8888664 66899999988774

This CD includes the second ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products have been described (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) and are represented in this CD. Members of this CD belong to the superfamily of ACT regulatory domains.

>cd04927 ACT_ACR-like_2 Second ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein)

Probab=99.53  E-value=1.2e-13  Score=94.87  Aligned_cols=70  Identities=20%  Similarity=0.287  Sum_probs=61.8

Q ss_pred             EEEEEecCcchHHHHHHHHHHhCCccEEEEEEEe-cCCeEEEEEEEEe-CCCCCChHHHHHHHHHHHHHcCC
Q 028501          131 LLYIETADRPGLLVEIMKIIADVNVDVESAEIDT-EGLVAKDKFHVSY-GGAALNSSLSQVLVNCLRYYLRR  200 (208)
Q Consensus       131 ~i~v~~~Dr~GlL~~i~~~l~~~~i~I~~a~i~t-~~~~~~~~f~v~~-~g~~~~~~~~~~l~~~l~~~l~~  200 (208)
                      +++|.+.||||||++|+++|+.+|+||.+|++.| .++.+.|+|+|++ +|...+++.+++|+++|.++|+.
T Consensus         2 ~~ei~~~Dr~gLfa~i~~~l~~~~l~I~~A~I~Tt~~~~v~D~F~V~d~~~~~~~~~~~~~l~~~L~~~L~~   73 (76)
T cd04927           2 LLKLFCSDRKGLLHDVTEVLYELELTIERVKVSTTPDGRVLDLFFITDARELLHTKKRREETYDYLRAVLGD   73 (76)
T ss_pred             EEEEEECCCCCHHHHHHHHHHHCCCeEEEEEEEECCCCEEEEEEEEeCCCCCCCCHHHHHHHHHHHHHHHch
Confidence            6899999999999999999999999999999997 7889999999998 55533445778899999999875

This CD includes the second ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) have been described, however, the ACR-like sequences in this CD are distinct from those characterized. This CD includes the Oryza sativa ACR-like protein (Os05g0113000) encoded on chromosome 5 and the Arabidopsis thaliana predicted gene product, At2g39570. Members of this CD belong to the superfamily of ACT regulatory domains.

>PRK00275 glnD PII uridylyl-transferase; Provisional

Probab=99.52  E-value=1.2e-13  Score=132.92  Aligned_cols=87  Identities=25%  Similarity=0.382  Sum_probs=81.8

Q ss_pred             CCEEEEeecCCCCeEEEEEEeCCcccHHHHHHHHHHHCCceEEEEEEEecCCeeEEEEEEeeCCCCCCCCCHHHHHHHHH
Q 028501            1 MPHVLIDQDSNSDATIVQLSFGDRLGALIDTMNALKDLGLDVAKGTVNTEGSVKQTKFFITRLDTGRKVEDPDLLERIRL   80 (208)
Q Consensus         1 ~p~V~~~~~~~~~~~~v~v~~~DrpGLl~~i~~~L~~~gl~I~~a~i~t~~~~~~d~F~v~~~~~g~~~~~~~~~~~l~~   80 (208)
                      +|.|.+++..+.+.|+|+|+++||||||++|+++|+.+|++|++|+|+|.++.++|+|+|++.+ |.++.+++++++|++
T Consensus       801 ~~~V~i~~~~~~~~T~i~V~a~DrpGLLa~I~~~L~~~~l~I~~AkI~T~g~~v~D~F~V~d~~-g~~l~~~~~~~~l~~  879 (895)
T PRK00275        801 PTQVTISNDAQRPVTVLEIIAPDRPGLLARIGRIFLEFDLSLQNAKIATLGERVEDVFFITDAD-NQPLSDPQLCSRLQD  879 (895)
T ss_pred             CCEEEEEECCCCCeEEEEEEECCCCCHHHHHHHHHHHCCCEEEEeEEEecCCEEEEEEEEECCC-CCCCCCHHHHHHHHH
Confidence            4789999999999999999999999999999999999999999999999999999999999986 998888788999999


Q ss_pred             HHHHhhcc
Q 028501           81 TIINNLLK   88 (208)
Q Consensus        81 ~L~~~l~~   88 (208)
                      .|.++|.+
T Consensus       880 ~L~~~L~~  887 (895)
T PRK00275        880 AICEQLDA  887 (895)
T ss_pred             HHHHHHhc
Confidence            99998865

>cd04900 ACT_UUR-like_1 ACT domain family, ACT_UUR-like_1, includes the first of two C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD and related domains

Probab=99.52  E-value=2.2e-13  Score=92.63  Aligned_cols=69  Identities=26%  Similarity=0.336  Sum_probs=61.3

Q ss_pred             EEEEEEecCcchHHHHHHHHHHhCCccEEEEEEEec-CCeEEEEEEEEe-CCCCCCh-HHHHHHHHHHHHHc
Q 028501          130 SLLYIETADRPGLLVEIMKIIADVNVDVESAEIDTE-GLVAKDKFHVSY-GGAALNS-SLSQVLVNCLRYYL  198 (208)
Q Consensus       130 ~~i~v~~~Dr~GlL~~i~~~l~~~~i~I~~a~i~t~-~~~~~~~f~v~~-~g~~~~~-~~~~~l~~~l~~~l  198 (208)
                      +.++|.+.||||||++|+++|+.+|+||.+|++.|. ++.+.|+|+|++ +|.++.+ +..+.|++.|..+|
T Consensus         2 ~~i~v~~~Dr~gLl~~i~~~l~~~~l~I~~A~i~T~~~~~v~D~F~v~~~~~~~~~~~~~~~~l~~~L~~~l   73 (73)
T cd04900           2 TEVFIYTPDRPGLFARIAGALDQLGLNILDARIFTTRDGYALDTFVVLDPDGEPIGERERLARIREALEDAL   73 (73)
T ss_pred             EEEEEEecCCCCHHHHHHHHHHHCCCCeEEeEEEEeCCCeEEEEEEEECCCCCCCChHHHHHHHHHHHHhhC
Confidence            578999999999999999999999999999999988 478999999987 7888865 46688999888764

This ACT domain family, ACT_UUR-like_1, includes the first of two C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD; including those enzymes similar to the GlnD found in enteric Escherichia coli and those found in photosynthetic, nitrogen-fixing bacterium Rhodospirillum rubrum. Also included in this CD is the N-terminal ACT domain of a yet characterized Arabidopsis/Oryza predicted tyrosine kinase. Members of this CD belong to the superfamily of ACT regulatory domains.

>PRK05007 PII uridylyl-transferase; Provisional

Probab=99.50  E-value=1.5e-13  Score=132.25  Aligned_cols=85  Identities=19%  Similarity=0.268  Sum_probs=79.4

Q ss_pred             CCEEEEeecCCCCeEEEEEEeCCcccHHHHHHHHHHHCCceEEEEEEEecCCeeEEEEEEeeCCCCCCCCCHHHHHHHHH
Q 028501            1 MPHVLIDQDSNSDATIVQLSFGDRLGALIDTMNALKDLGLDVAKGTVNTEGSVKQTKFFITRLDTGRKVEDPDLLERIRL   80 (208)
Q Consensus         1 ~p~V~~~~~~~~~~~~v~v~~~DrpGLl~~i~~~L~~~gl~I~~a~i~t~~~~~~d~F~v~~~~~g~~~~~~~~~~~l~~   80 (208)
                      +|.|.|+|..++.+|+|.|.++||||||++|+++|.++|++|..|+|+|.|+.+.|+|||++.. |.+++ +++++.|++
T Consensus       795 ~~~V~~d~~~s~~~TvlEV~a~DRpGLL~~I~~~l~~~~l~I~~AkI~T~gera~DvFyV~~~~-g~~l~-~~~~~~l~~  872 (884)
T PRK05007        795 PTEVSFLPTHTDRRSYMELIALDQPGLLARVGKIFADLGISLHGARITTIGERVEDLFILATAD-RRALN-EELQQELRQ  872 (884)
T ss_pred             CCEEEEccCCCCCeEEEEEEeCCchHHHHHHHHHHHHCCcEEEEEEEeccCceEEEEEEEEcCC-CCcCC-HHHHHHHHH
Confidence            4789999999999999999999999999999999999999999999999999999999999986 89887 677899999


Q ss_pred             HHHHhhc
Q 028501           81 TIINNLL   87 (208)
Q Consensus        81 ~L~~~l~   87 (208)
                      .|.+++.
T Consensus       873 ~L~~~l~  879 (884)
T PRK05007        873 RLTEALN  879 (884)
T ss_pred             HHHHHHh
Confidence            9988774

>PRK01759 glnD PII uridylyl-transferase; Provisional

Probab=99.50  E-value=1.3e-13  Score=132.22  Aligned_cols=84  Identities=19%  Similarity=0.354  Sum_probs=77.6

Q ss_pred             CCEEEEeecCCCCeEEEEEEeCCcccHHHHHHHHHHHCCceEEEEEEEecCCeeEEEEEEeeCCCCCCCCCHHHHHHHHH
Q 028501            1 MPHVLIDQDSNSDATIVQLSFGDRLGALIDTMNALKDLGLDVAKGTVNTEGSVKQTKFFITRLDTGRKVEDPDLLERIRL   80 (208)
Q Consensus         1 ~p~V~~~~~~~~~~~~v~v~~~DrpGLl~~i~~~L~~~gl~I~~a~i~t~~~~~~d~F~v~~~~~g~~~~~~~~~~~l~~   80 (208)
                      .|.|.|+|..++.+|+|.|.++||||||++|+++|+++|++|+.|+|+|.|+.+.|+|||++.+ |.++.++++ +.|++
T Consensus       770 ~~~V~~dn~~s~~~T~iev~a~DrpGLL~~I~~~l~~~~l~i~~AkI~T~gerv~D~Fyv~~~~-g~~l~~~~~-~~l~~  847 (854)
T PRK01759        770 KTEVRFLNEEKQEQTEMELFALDRAGLLAQVSQVFSELNLNLLNAKITTIGEKAEDFFILTNQQ-GQALDEEER-KALKS  847 (854)
T ss_pred             CCEEEEccCCCCCeEEEEEEeCCchHHHHHHHHHHHHCCCEEEEEEEcccCceEEEEEEEECCC-CCcCChHHH-HHHHH
Confidence            4789999999999999999999999999999999999999999999999999999999999986 999887555 88888


Q ss_pred             HHHHhh
Q 028501           81 TIINNL   86 (208)
Q Consensus        81 ~L~~~l   86 (208)
                      +|.++|
T Consensus       848 ~L~~~l  853 (854)
T PRK01759        848 RLLSNL  853 (854)
T ss_pred             HHHHHh
Confidence            887765

>cd04928 ACT_TyrKc Uncharacterized, N-terminal ACT domain of an Arabidopsis/Oryza predicted tyrosine kinase and other related ACT domains

Probab=99.47  E-value=6.2e-13  Score=88.89  Aligned_cols=65  Identities=17%  Similarity=0.274  Sum_probs=54.8

Q ss_pred             EEEEEEeCCcccHHHHHHHHHHHCCceEEEEEEEecCC-eeEEEEEEeeCCCCCCCCCHHHHHHHHHHHHHhh
Q 028501           15 TIVQLSFGDRLGALIDTMNALKDLGLDVAKGTVNTEGS-VKQTKFFITRLDTGRKVEDPDLLERIRLTIINNL   86 (208)
Q Consensus        15 ~~v~v~~~DrpGLl~~i~~~L~~~gl~I~~a~i~t~~~-~~~d~F~v~~~~~g~~~~~~~~~~~l~~~L~~~l   86 (208)
                      .+|.|+++||||||++++++|+.+|+||++|+|+|+.+ +++|+|+|.+.+ |..      -+.++++|.++|
T Consensus         2 ~eI~V~~~Dr~gLFa~iag~L~~~~LnI~~A~i~tt~dG~~LDtF~V~d~~-~~~------~~~~~~~~~~~~   67 (68)
T cd04928           2 HEITFAAGDKPKLLSQLSSLLGDLGLNIAEAHAFSTDDGLALDIFVVTGWK-RGE------TAALGHALQKEI   67 (68)
T ss_pred             EEEEEEECCCcchHHHHHHHHHHCCCceEEEEEEEcCCCeEEEEEEEecCC-ccc------hHHHHHHHHHhh
Confidence            47999999999999999999999999999999999876 579999999886 652      245666666554

This CD includes a novel, yet uncharacterized, N-terminal ACT domain of an Arabidopsis/Oryza predicted tyrosine kinase and other related ACT domains. Members of this CD belong to the superfamily of ACT regulatory domains.

>PRK04374 PII uridylyl-transferase; Provisional

Probab=99.46  E-value=7.2e-13  Score=127.15  Aligned_cols=85  Identities=24%  Similarity=0.287  Sum_probs=77.5

Q ss_pred             CCEEEEeecCCCCeEEEEEEeCCcccHHHHHHHHHHHCCceEEEEEEEecCCeeEEEEEEeeCCCCCCCCCHHHHHHHHH
Q 028501            1 MPHVLIDQDSNSDATIVQLSFGDRLGALIDTMNALKDLGLDVAKGTVNTEGSVKQTKFFITRLDTGRKVEDPDLLERIRL   80 (208)
Q Consensus         1 ~p~V~~~~~~~~~~~~v~v~~~DrpGLl~~i~~~L~~~gl~I~~a~i~t~~~~~~d~F~v~~~~~g~~~~~~~~~~~l~~   80 (208)
                      .|.|.+++..+.+.|+|+|++.||||||++|+++|+.+|++|+.|+|+|.++.++|+|+|++.+ |.++.++++ +.|++
T Consensus       783 ~~~V~~~~~~~~~~t~leI~a~DrpGLLa~Ia~~l~~~~l~I~~AkI~T~g~~a~D~F~V~d~~-g~~~~~~~~-~~l~~  860 (869)
T PRK04374        783 APRVEFSESAGGRRTRISLVAPDRPGLLADVAHVLRMQHLRVHDARIATFGERAEDQFQITDEH-DRPLSESAR-QALRD  860 (869)
T ss_pred             CCeEEEeecCCCCeEEEEEEeCCcCcHHHHHHHHHHHCCCeEEEeEEEecCCEEEEEEEEECCC-CCcCChHHH-HHHHH
Confidence            4789999999999999999999999999999999999999999999999999999999999986 888766555 88998


Q ss_pred             HHHHhhc
Q 028501           81 TIINNLL   87 (208)
Q Consensus        81 ~L~~~l~   87 (208)
                      +|.+++.
T Consensus       861 ~L~~~l~  867 (869)
T PRK04374        861 ALCACLD  867 (869)
T ss_pred             HHHHHhc
Confidence            8888763

>cd04926 ACT_ACR_4 C-terminal ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein)

Probab=99.45  E-value=1.3e-12  Score=88.71  Aligned_cols=67  Identities=30%  Similarity=0.558  Sum_probs=58.7

Q ss_pred             EEEEEEeCCcccHHHHHHHHHHHCCceEEEEEEEecCCeeEEEEEEeeCCCCCCCCCHHHHHHHHHHHH
Q 028501           15 TIVQLSFGDRLGALIDTMNALKDLGLDVAKGTVNTEGSVKQTKFFITRLDTGRKVEDPDLLERIRLTII   83 (208)
Q Consensus        15 ~~v~v~~~DrpGLl~~i~~~L~~~gl~I~~a~i~t~~~~~~d~F~v~~~~~g~~~~~~~~~~~l~~~L~   83 (208)
                      +.|+|.++|+||+|++|+++|+++|+||.+|.++|.+++++|+|+|++.+ |.++ ++++++++++.|-
T Consensus         2 tri~V~~~D~~Gll~~i~~~l~~~~lnI~sa~i~t~~~~~~d~f~v~~~~-~~~~-~~~~~~~l~~~l~   68 (72)
T cd04926           2 VRLELRTEDRVGLLSDVTRVFRENGLTVTRAEISTQGDMAVNVFYVTDAN-GNPV-DPKTIEAVRQEIG   68 (72)
T ss_pred             eEEEEEECCccCHHHHHHHHHHHCCcEEEEEEEecCCCeEEEEEEEECCC-CCcC-CHHHHHHHHHHhc
Confidence            68999999999999999999999999999999999978889999999886 7776 5567776666653

This CD includes the C-terminal ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products have been described (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) and are represented in this CD. Members of this CD belong to the superfamily of ACT regulatory domains.

>PRK05092 PII uridylyl-transferase; Provisional

Probab=99.41  E-value=2.4e-12  Score=124.87  Aligned_cols=87  Identities=30%  Similarity=0.453  Sum_probs=82.1

Q ss_pred             CCEEEEeecCCCCeEEEEEEeCCcccHHHHHHHHHHHCCceEEEEEEEecCCeeEEEEEEeeCCCCCCCCCHHHHHHHHH
Q 028501            1 MPHVLIDQDSNSDATIVQLSFGDRLGALIDTMNALKDLGLDVAKGTVNTEGSVKQTKFFITRLDTGRKVEDPDLLERIRL   80 (208)
Q Consensus         1 ~p~V~~~~~~~~~~~~v~v~~~DrpGLl~~i~~~L~~~gl~I~~a~i~t~~~~~~d~F~v~~~~~g~~~~~~~~~~~l~~   80 (208)
                      +|.|.|++..+.++++|.|+++||||||++|+++|+++|+||.+|+|.|.++.+.|+|+|++.+ |.++.++++++.|++
T Consensus       830 ~~~V~~~~~~s~~~t~i~I~~~DrpGLl~~I~~~l~~~gl~I~~A~I~T~~~~~~D~F~v~d~~-g~~i~~~~~~~~l~~  908 (931)
T PRK05092        830 PPRVTIDNEASNRFTVIEVNGRDRPGLLYDLTRALSDLNLNIASAHIATYGERAVDVFYVTDLF-GLKITNEARQAAIRR  908 (931)
T ss_pred             CCEEEEeeCCCCCeEEEEEEECCcCcHHHHHHHHHHHCCceEEEEEEEEcCCEEEEEEEEeCCC-CCcCCCHHHHHHHHH
Confidence            4789999999999999999999999999999999999999999999999999999999999986 999888888999999


Q ss_pred             HHHHhhcc
Q 028501           81 TIINNLLK   88 (208)
Q Consensus        81 ~L~~~l~~   88 (208)
                      .|.++|.+
T Consensus       909 ~L~~~L~~  916 (931)
T PRK05092        909 ALLAALAE  916 (931)
T ss_pred             HHHHHhcC
Confidence            99998865

>cd04899 ACT_ACR-UUR-like_2 C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD and related domains

Probab=99.41  E-value=3.9e-12  Score=85.26  Aligned_cols=69  Identities=30%  Similarity=0.516  Sum_probs=62.0

Q ss_pred             EEEEEEeCCcccHHHHHHHHHHHCCceEEEEEEEecCCeeEEEEEEeeCCCCCCCCCHHHHHHHHHHHHHh
Q 028501           15 TIVQLSFGDRLGALIDTMNALKDLGLDVAKGTVNTEGSVKQTKFFITRLDTGRKVEDPDLLERIRLTIINN   85 (208)
Q Consensus        15 ~~v~v~~~DrpGLl~~i~~~L~~~gl~I~~a~i~t~~~~~~d~F~v~~~~~g~~~~~~~~~~~l~~~L~~~   85 (208)
                      |.|.|.++|+||+|++|+++|+++|++|.++++.+.++.++|+|++++.+ |.+ .+.++++++++.|.++
T Consensus         1 ~~l~v~~~d~~gll~~i~~~l~~~~~~I~~~~~~~~~~~~~~~f~i~~~~-~~~-~~~~~~~~i~~~l~~~   69 (70)
T cd04899           1 TVLELTALDRPGLLADVTRVLAELGLNIHSAKIATLGERAEDVFYVTDAD-GQP-LDPERQEALRAALGEA   69 (70)
T ss_pred             CEEEEEEcCCccHHHHHHHHHHHCCCeEEEEEEEecCCEEEEEEEEECCC-CCc-CCHHHHHHHHHHHHhh
Confidence            57899999999999999999999999999999999988899999999986 877 4557888898888764

This ACT domain family, ACT_ACR-UUR-like_2, includes the second of two C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD; including those enzymes similar to the GlnD found in enteric Escherichia coli and those found in photosynthetic, nitrogen-fixing bacterium Rhodospirillum rubrum. Also included in this CD are the second and fourth ACT domains of a novel protein composed almost entirely of ACT domain repeats, the ACR protein. These ACR proteins, found in Arabidopsis and Oryza, are proposed to function as novel regulatory or sensor proteins in plants. Members of this CD belong to the superfamily of ACT regulatory domains.

>PRK03059 PII uridylyl-transferase; Provisional

Probab=99.37  E-value=5.7e-12  Score=121.06  Aligned_cols=81  Identities=23%  Similarity=0.356  Sum_probs=73.2

Q ss_pred             CEEEEeecCCCCeEEEEEEeCCcccHHHHHHHHHHHCCceEEEEEEEecCCeeEEEEEEeeCCCCCCCCCHHHHHHHHHH
Q 028501            2 PHVLIDQDSNSDATIVQLSFGDRLGALIDTMNALKDLGLDVAKGTVNTEGSVKQTKFFITRLDTGRKVEDPDLLERIRLT   81 (208)
Q Consensus         2 p~V~~~~~~~~~~~~v~v~~~DrpGLl~~i~~~L~~~gl~I~~a~i~t~~~~~~d~F~v~~~~~g~~~~~~~~~~~l~~~   81 (208)
                      |.|.+++...++.|+|.|+++||||||++||++|+.+|++|+.|+|+|.++.++|+|+|++    .+..+++++++|++.
T Consensus       774 ~~V~~~~~~~~~~T~i~V~a~DrpGLLa~Ia~~L~~~~l~I~~AkI~T~~~~v~DvF~V~~----~~~~~~~~~~~l~~~  849 (856)
T PRK03059        774 PRVDLRPDERGQYYILSVSANDRPGLLYAIARVLAEHRVSVHTAKINTLGERVEDTFLIDG----SGLSDNRLQIQLETE  849 (856)
T ss_pred             ceEEEEEcCCCCEEEEEEEeCCcchHHHHHHHHHHHCCCeEEEEEEeecCCEEEEEEEEcC----CCCCCHHHHHHHHHH
Confidence            6788999999999999999999999999999999999999999999999999999999953    335567888999999


Q ss_pred             HHHhh
Q 028501           82 IINNL   86 (208)
Q Consensus        82 L~~~l   86 (208)
                      |.+++
T Consensus       850 L~~~L  854 (856)
T PRK03059        850 LLDAL  854 (856)
T ss_pred             HHHHh
Confidence            98866

>PRK03381 PII uridylyl-transferase; Provisional

Probab=99.36  E-value=5.3e-12  Score=120.17  Aligned_cols=78  Identities=28%  Similarity=0.404  Sum_probs=70.1

Q ss_pred             CEEEEeecCCCCeEEEEEEeCCcccHHHHHHHHHHHCCceEEEEEEEecCCeeEEEEEEeeCCCCCCCCCHHHHHHHHHH
Q 028501            2 PHVLIDQDSNSDATIVQLSFGDRLGALIDTMNALKDLGLDVAKGTVNTEGSVKQTKFFITRLDTGRKVEDPDLLERIRLT   81 (208)
Q Consensus         2 p~V~~~~~~~~~~~~v~v~~~DrpGLl~~i~~~L~~~gl~I~~a~i~t~~~~~~d~F~v~~~~~g~~~~~~~~~~~l~~~   81 (208)
                      |.|.+++..+.+.++|+|+++||||||++|+++|+.+|+||..|+|+|.++.++|+|+|++.+ |.++.++  ++.|+++
T Consensus       695 ~~v~~~~~~~~~~t~i~V~a~DrpGLla~Ia~~L~~~~lnI~~AkI~T~g~~a~D~F~V~d~~-g~~~~~~--~~~l~~~  771 (774)
T PRK03381        695 PRVLWLDGASPDATVLEVRAADRPGLLARLARALERAGVDVRWARVATLGADVVDVFYVTGAA-GGPLADA--RAAVEQA  771 (774)
T ss_pred             cEEEEEECCCCCeEEEEEEeCCchhHHHHHHHHHHHCCCeEEEEEEeecCCeEEEEEEEECCC-CCcCchH--HHHHHHH
Confidence            577899999999999999999999999999999999999999999999999999999999997 9988753  5666555


Q ss_pred             H
Q 028501           82 I   82 (208)
Q Consensus        82 L   82 (208)
                      |
T Consensus       772 L  772 (774)
T PRK03381        772 V  772 (774)
T ss_pred             h
Confidence            4

>PRK00227 glnD PII uridylyl-transferase; Provisional

Probab=99.35  E-value=2.6e-11  Score=113.58  Aligned_cols=144  Identities=13%  Similarity=0.150  Sum_probs=114.6

Q ss_pred             EEEEEEe-CCcccHHHHHHHHHHHCCceEEEEEEEecCCeeEEEEEEeeCCCCCCCCCHHHHHHHHHHHHHhhccCCCCc
Q 028501           15 TIVQLSF-GDRLGALIDTMNALKDLGLDVAKGTVNTEGSVKQTKFFITRLDTGRKVEDPDLLERIRLTIINNLLKYHPES   93 (208)
Q Consensus        15 ~~v~v~~-~DrpGLl~~i~~~L~~~gl~I~~a~i~t~~~~~~d~F~v~~~~~g~~~~~~~~~~~l~~~L~~~l~~~~~~~   93 (208)
                      -.++|.. +|++|+|.+++++|+.++++|.+|++.+ ++.+...|.|.... |.++. +   ..+++.+..++.+..|..
T Consensus       547 ~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~a~~~~-~~~~~~~~~v~~~~-~~~~~-~---~~~~~~~~~~~~~~~~~~  620 (693)
T PRK00227        547 GFFTVIWHGDYPRELVRVLALIAAKGWNILSARMVA-NGPWSAEFDVRANG-PQDFD-P---QEFLQAYKSGVYSELPDP  620 (693)
T ss_pred             CeEEEEecCCcccHHHHHHHHHHhcCceeeEeEEec-CCceEEEEEEecCC-CCCCC-h---HHHHHHHHHhhcCCCCcc
Confidence            4778887 9999999999999999999999999999 66677899999886 77653 2   667788888776532210


Q ss_pred             hhhhhccccccCCCCCcccCCccccEEEEecCCCCeEEEEEEecCcchHHHHHHHHHHhCCccEEEEEEEecCCeEEEEE
Q 028501           94 SEQLAMGEAFGIKAPEKKLDVDIATHIHVKEDGPKRSLLYIETADRPGLLVEIMKIIADVNVDVESAEIDTEGLVAKDKF  173 (208)
Q Consensus        94 ~~~l~~~~~~~~~~~~~~~~~~~~~~V~~~~~~~~~~~i~v~~~Dr~GlL~~i~~~l~~~~i~I~~a~i~t~~~~~~~~f  173 (208)
                                          ...||.+.+..     ++++|.+.||+|+|+.|+++|.    +|.+++++|.|..+.+.|
T Consensus       621 --------------------~~~~~~~~~~~-----~~~e~r~~dr~g~l~~~~~~l~----~~~~~~~~~~g~~~~~~~  671 (693)
T PRK00227        621 --------------------APGITATFWHG-----NILEVRTEDRRGALGALLGVLP----DLLWITASTPGATMIVQA  671 (693)
T ss_pred             --------------------cCCCCceEeeC-----cEEEEEeCccccHHHHHHHHhh----hhhhHhhcCCCcceEEEE
Confidence                                12345555443     7999999999999999999999    889999999999999999


Q ss_pred             EEEeCCCCCChHHHHHHHHHHHHHcC
Q 028501          174 HVSYGGAALNSSLSQVLVNCLRYYLR  199 (208)
Q Consensus       174 ~v~~~g~~~~~~~~~~l~~~l~~~l~  199 (208)
                      ++..      +..+..+..++..+|.
T Consensus       672 ~~~~------~~~r~~~~~~~~~~~~  691 (693)
T PRK00227        672 ALKP------GFDRATVERDVTRVLA  691 (693)
T ss_pred             EecC------cccHHHHHHHHHHHHh
Confidence            9972      1235677777776654

>cd04899 ACT_ACR-UUR-like_2 C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD and related domains

Probab=99.33  E-value=2.1e-11  Score=81.69  Aligned_cols=69  Identities=32%  Similarity=0.528  Sum_probs=61.5

Q ss_pred             EEEEEEecCcchHHHHHHHHHHhCCccEEEEEEEecCCeEEEEEEEEe-CCCCCChHHHHHHHHHHHHHc
Q 028501          130 SLLYIETADRPGLLVEIMKIIADVNVDVESAEIDTEGLVAKDKFHVSY-GGAALNSSLSQVLVNCLRYYL  198 (208)
Q Consensus       130 ~~i~v~~~Dr~GlL~~i~~~l~~~~i~I~~a~i~t~~~~~~~~f~v~~-~g~~~~~~~~~~l~~~l~~~l  198 (208)
                      |.+.|.+.|+||+|++|+++|+++|++|.++++.+.++.+.+.|++++ +|.+.+.+..+.|+++|..++
T Consensus         1 ~~l~v~~~d~~gll~~i~~~l~~~~~~I~~~~~~~~~~~~~~~f~i~~~~~~~~~~~~~~~i~~~l~~~~   70 (70)
T cd04899           1 TVLELTALDRPGLLADVTRVLAELGLNIHSAKIATLGERAEDVFYVTDADGQPLDPERQEALRAALGEAL   70 (70)
T ss_pred             CEEEEEEcCCccHHHHHHHHHHHCCCeEEEEEEEecCCEEEEEEEEECCCCCcCCHHHHHHHHHHHHhhC
Confidence            468999999999999999999999999999999998889999999997 777766667788999987764

This ACT domain family, ACT_ACR-UUR-like_2, includes the second of two C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD; including those enzymes similar to the GlnD found in enteric Escherichia coli and those found in photosynthetic, nitrogen-fixing bacterium Rhodospirillum rubrum. Also included in this CD are the second and fourth ACT domains of a novel protein composed almost entirely of ACT domain repeats, the ACR protein. These ACR proteins, found in Arabidopsis and Oryza, are proposed to function as novel regulatory or sensor proteins in plants. Members of this CD belong to the superfamily of ACT regulatory domains.

>TIGR01693 UTase_glnD [Protein-PII] uridylyltransferase

Probab=99.31  E-value=1.5e-11  Score=118.41  Aligned_cols=84  Identities=27%  Similarity=0.402  Sum_probs=77.7

Q ss_pred             CCEEEEeecCCCCeEEEEEEeCCcccHHHHHHHHHHHCCceEEEEEEEecCCeeEEEEEEeeCCCCCCCCCHHHHHHHHH
Q 028501            1 MPHVLIDQDSNSDATIVQLSFGDRLGALIDTMNALKDLGLDVAKGTVNTEGSVKQTKFFITRLDTGRKVEDPDLLERIRL   80 (208)
Q Consensus         1 ~p~V~~~~~~~~~~~~v~v~~~DrpGLl~~i~~~L~~~gl~I~~a~i~t~~~~~~d~F~v~~~~~g~~~~~~~~~~~l~~   80 (208)
                      +|.|.|+|..++.+|.|.|.++||||||++|+++|+++|++|..|+|.|.++.+.|+|+|++.. |.++.+ ++++.|++
T Consensus       766 ~~~V~~d~~~s~~~t~~~v~~~DrpGll~~i~~~l~~~~~~i~~a~i~t~~~~~~d~F~v~~~~-g~~~~~-~~~~~l~~  843 (850)
T TIGR01693       766 PPRVTILNTASRKATIMEVRALDRPGLLARVGRTLEELGLSIQSAKITTFGEKAEDVFYVTDLF-GLKLTD-EEEQRLLE  843 (850)
T ss_pred             CCeEEEccCCCCCeEEEEEEECCccHHHHHHHHHHHHCCCeEEEEEEEecCccceeEEEEECCC-CCCCCH-HHHHHHHH
Confidence            4789999999999999999999999999999999999999999999999999999999999986 998876 67788888


Q ss_pred             HHHHhh
Q 028501           81 TIINNL   86 (208)
Q Consensus        81 ~L~~~l   86 (208)
                      +|.+++
T Consensus       844 ~L~~~l  849 (850)
T TIGR01693       844 VLAASV  849 (850)
T ss_pred             HHHHHh
Confidence            887755

This model describes GlnD, the uridylyltransferase/uridylyl-removing enzyme for the nitrogen regulatory protein PII. Not all homologs of PII share the property of uridylyltransferase modification on the characteristic Tyr residue (see Prosite pattern PS00496 and document PDOC00439), but the modification site is preserved in the PII homolog of all species with a member of this family.

>cd04926 ACT_ACR_4 C-terminal ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein)

Probab=99.24  E-value=1.2e-10  Score=78.90  Aligned_cols=65  Identities=26%  Similarity=0.410  Sum_probs=55.3

Q ss_pred             EEEEEEecCcchHHHHHHHHHHhCCccEEEEEEEecCCeEEEEEEEEe-CCCCCChHHHHHHHHHH
Q 028501          130 SLLYIETADRPGLLVEIMKIIADVNVDVESAEIDTEGLVAKDKFHVSY-GGAALNSSLSQVLVNCL  194 (208)
Q Consensus       130 ~~i~v~~~Dr~GlL~~i~~~l~~~~i~I~~a~i~t~~~~~~~~f~v~~-~g~~~~~~~~~~l~~~l  194 (208)
                      +.+.|.++||||+|++|+.+|+++|+||.++.+.|.++.+.++|++++ +|.+++.+..++|+++|
T Consensus         2 tri~V~~~D~~Gll~~i~~~l~~~~lnI~sa~i~t~~~~~~d~f~v~~~~~~~~~~~~~~~l~~~l   67 (72)
T cd04926           2 VRLELRTEDRVGLLSDVTRVFRENGLTVTRAEISTQGDMAVNVFYVTDANGNPVDPKTIEAVRQEI   67 (72)
T ss_pred             eEEEEEECCccCHHHHHHHHHHHCCcEEEEEEEecCCCeEEEEEEEECCCCCcCCHHHHHHHHHHh
Confidence            578899999999999999999999999999999998888889999987 77777444555555554

This CD includes the C-terminal ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products have been described (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) and are represented in this CD. Members of this CD belong to the superfamily of ACT regulatory domains.

>COG2844 GlnD UTP:GlnB (protein PII) uridylyltransferase [Posttranslational modification, protein turnover, chaperones]

Probab=99.24  E-value=4.4e-11  Score=111.43  Aligned_cols=84  Identities=25%  Similarity=0.398  Sum_probs=72.9

Q ss_pred             CCEEEEeecCCCCeEEEEEEeCCcccHHHHHHHHHHHCCceEEEEEEEecCCeeEEEEEEeeCCCCCCCCCHHHHHHHHH
Q 028501            1 MPHVLIDQDSNSDATIVQLSFGDRLGALIDTMNALKDLGLDVAKGTVNTEGSVKQTKFFITRLDTGRKVEDPDLLERIRL   80 (208)
Q Consensus         1 ~p~V~~~~~~~~~~~~v~v~~~DrpGLl~~i~~~L~~~gl~I~~a~i~t~~~~~~d~F~v~~~~~g~~~~~~~~~~~l~~   80 (208)
                      +|.|.|.+...+..++++|.+.||||||+.++++|++++++|+.|+|.|.|+.+.|+|+|++.. |.+++++ ....+.+
T Consensus       778 ~p~v~i~~t~~~~~t~lEv~alDRpGLLa~v~~v~~dl~l~i~~AkItT~GErveD~F~vt~~~-~~~l~~~-~~q~l~~  855 (867)
T COG2844         778 PPRVTILPTASNDKTVLEVRALDRPGLLAALAGVFADLGLSLHSAKITTFGERVEDVFIVTDAD-GQALNAE-LRQSLLQ  855 (867)
T ss_pred             CCceeeccccCCCceEEEEEeCCcccHHHHHHHHHHhcccceeeeeeccccccceeEEEEeccc-cccCCHH-HHHHHHH
Confidence            5899999999999999999999999999999999999999999999999999999999999997 8888543 3344444


Q ss_pred             HHHHhh
Q 028501           81 TIINNL   86 (208)
Q Consensus        81 ~L~~~l   86 (208)
                      .|.+++
T Consensus       856 ~ll~al  861 (867)
T COG2844         856 RLLEAL  861 (867)
T ss_pred             HHHHHh
Confidence            444444

>cd04873 ACT_UUR-ACR-like ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD

Probab=99.14  E-value=9.6e-10  Score=73.14  Aligned_cols=69  Identities=32%  Similarity=0.548  Sum_probs=59.5

Q ss_pred             EEEEEEeCCcccHHHHHHHHHHHCCceEEEEEEEecCCeeEEEEEEeeCCCCCCCCCHHHHHHHHHHHHHh
Q 028501           15 TIVQLSFGDRLGALIDTMNALKDLGLDVAKGTVNTEGSVKQTKFFITRLDTGRKVEDPDLLERIRLTIINN   85 (208)
Q Consensus        15 ~~v~v~~~DrpGLl~~i~~~L~~~gl~I~~a~i~t~~~~~~d~F~v~~~~~g~~~~~~~~~~~l~~~L~~~   85 (208)
                      +.|.|.++|+||+|++++++|+++|++|.++.+.+.++...+.|++..++ +.. .++++++++++.|..+
T Consensus         1 ~~l~i~~~d~~g~l~~i~~~l~~~~~~I~~~~~~~~~~~~~~~~~v~~~~-~~~-~~~~~~~~l~~~l~~~   69 (70)
T cd04873           1 TVVEVYAPDRPGLLADITRVLADLGLNIHDARISTTGERALDVFYVTDSD-GRP-LDPERIARLEEALEDA   69 (70)
T ss_pred             CEEEEEeCCCCCHHHHHHHHHHHCCCeEEEEEEeecCCEEEEEEEEECCC-CCc-CCHHHHHHHHHHHHhh
Confidence            36889999999999999999999999999999999888888999998875 665 3457888888888653

This ACT domain family, ACT_UUR_ACR-like, includes the two C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD; including those enzymes similar to the GlnD found in enteric Escherichia coli and those found in photosynthetic, nitrogen-fixing bacterium Rhodospirillum rubrum. Also included in this CD are the four ACT domains of a novel protein composed almost entirely of ACT domain repeats (the ACR protein) and like proteins. These ACR proteins, found in Arabidopsis and Oryza, are proposed to function as novel regulatory or sensor proteins in plants. This CD also includes the first of the two ACT domains that comprise the Glycine Cleavage System Transcriptional Repressor (GcvR) protein and related domains, as well as, the N-terminal ACT domain of a yet characterized Arabidopsis/Oryza predicted t

>cd04873 ACT_UUR-ACR-like ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD

Probab=99.07  E-value=2.3e-09  Score=71.27  Aligned_cols=68  Identities=32%  Similarity=0.498  Sum_probs=58.4

Q ss_pred             EEEEEecCcchHHHHHHHHHHhCCccEEEEEEEecCCeEEEEEEEEe-CCCCCChHHHHHHHHHHHHHc
Q 028501          131 LLYIETADRPGLLVEIMKIIADVNVDVESAEIDTEGLVAKDKFHVSY-GGAALNSSLSQVLVNCLRYYL  198 (208)
Q Consensus       131 ~i~v~~~Dr~GlL~~i~~~l~~~~i~I~~a~i~t~~~~~~~~f~v~~-~g~~~~~~~~~~l~~~l~~~l  198 (208)
                      .+.|.+.|+||+|++|+.+|+++|++|.++.+.+.++...+.|.+.. ++.+.+++..+.|+++|..++
T Consensus         2 ~l~i~~~d~~g~l~~i~~~l~~~~~~I~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~l~~~~   70 (70)
T cd04873           2 VVEVYAPDRPGLLADITRVLADLGLNIHDARISTTGERALDVFYVTDSDGRPLDPERIARLEEALEDAL   70 (70)
T ss_pred             EEEEEeCCCCCHHHHHHHHHHHCCCeEEEEEEeecCCEEEEEEEEECCCCCcCCHHHHHHHHHHHHhhC
Confidence            57899999999999999999999999999999998778888999986 555555567788888887653

This ACT domain family, ACT_UUR_ACR-like, includes the two C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD; including those enzymes similar to the GlnD found in enteric Escherichia coli and those found in photosynthetic, nitrogen-fixing bacterium Rhodospirillum rubrum. Also included in this CD are the four ACT domains of a novel protein composed almost entirely of ACT domain repeats (the ACR protein) and like proteins. These ACR proteins, found in Arabidopsis and Oryza, are proposed to function as novel regulatory or sensor proteins in plants. This CD also includes the first of the two ACT domains that comprise the Glycine Cleavage System Transcriptional Repressor (GcvR) protein and related domains, as well as, the N-terminal ACT domain of a yet characterized Arabidopsis/Oryza predicted t

>cd04928 ACT_TyrKc Uncharacterized, N-terminal ACT domain of an Arabidopsis/Oryza predicted tyrosine kinase and other related ACT domains

Probab=99.03  E-value=3.5e-09  Score=70.80  Aligned_cols=64  Identities=19%  Similarity=0.290  Sum_probs=51.9

Q ss_pred             EEEEEEecCcchHHHHHHHHHHhCCccEEEEEEEecC-CeEEEEEEEEe-CCCCCChHHHHHHHHHHHHHc
Q 028501          130 SLLYIETADRPGLLVEIMKIIADVNVDVESAEIDTEG-LVAKDKFHVSY-GGAALNSSLSQVLVNCLRYYL  198 (208)
Q Consensus       130 ~~i~v~~~Dr~GlL~~i~~~l~~~~i~I~~a~i~t~~-~~~~~~f~v~~-~g~~~~~~~~~~l~~~l~~~l  198 (208)
                      +.|.|.++|||||++.|+.+|+.+|+||..|++.|.. +.+.|+|.|.+ +|.-     -+.|.++|+++|
T Consensus         2 ~eI~V~~~Dr~gLFa~iag~L~~~~LnI~~A~i~tt~dG~~LDtF~V~d~~~~~-----~~~~~~~~~~~~   67 (68)
T cd04928           2 HEITFAAGDKPKLLSQLSSLLGDLGLNIAEAHAFSTDDGLALDIFVVTGWKRGE-----TAALGHALQKEI   67 (68)
T ss_pred             EEEEEEECCCcchHHHHHHHHHHCCCceEEEEEEEcCCCeEEEEEEEecCCccc-----hHHHHHHHHHhh
Confidence            4688999999999999999999999999999998764 56889999997 5554     244555555554

This CD includes a novel, yet uncharacterized, N-terminal ACT domain of an Arabidopsis/Oryza predicted tyrosine kinase and other related ACT domains. Members of this CD belong to the superfamily of ACT regulatory domains.

>PF13740 ACT_6: ACT domain; PDB: 1ZPV_A 3P96_A 1U8S_A

Probab=98.96  E-value=7.8e-09  Score=70.73  Aligned_cols=65  Identities=15%  Similarity=0.196  Sum_probs=53.2

Q ss_pred             eEEEEEEeCCcccHHHHHHHHHHHCCceEEEEEEEecCCeeEEEEEEeeCCCCCCCCCHHHHHHHHHHHHHhh
Q 028501           14 ATIVQLSFGDRLGALIDTMNALKDLGLDVAKGTVNTEGSVKQTKFFITRLDTGRKVEDPDLLERIRLTIINNL   86 (208)
Q Consensus        14 ~~~v~v~~~DrpGLl~~i~~~L~~~gl~I~~a~i~t~~~~~~d~F~v~~~~~g~~~~~~~~~~~l~~~L~~~l   86 (208)
                      +++|++.|+||||+++.++++|+++||||.+.+..+.++.+.-.+.+..+        ++..+++++.|.+..
T Consensus         2 ~~vItv~G~DrpGiv~~v~~~l~~~g~ni~d~~~~~~~~~f~~~~~v~~~--------~~~~~~l~~~L~~l~   66 (76)
T PF13740_consen    2 QLVITVVGPDRPGIVAAVTGVLAEHGCNIEDSRQAVLGGRFTLIMLVSIP--------EDSLERLESALEELA   66 (76)
T ss_dssp             EEEEEEEEE--TTHHHHHHHHHHCTT-EEEEEEEEEETTEEEEEEEEEES--------HHHHHHHHHHHHHHH
T ss_pred             EEEEEEEecCCCcHHHHHHHHHHHCCCcEEEEEEEEEcCeEEEEEEEEeC--------cccHHHHHHHHHHHH
Confidence            57899999999999999999999999999999999999998877777643        256688888888743

>PF13740 ACT_6: ACT domain; PDB: 1ZPV_A 3P96_A 1U8S_A

Probab=98.96  E-value=5.4e-09  Score=71.54  Aligned_cols=67  Identities=16%  Similarity=0.218  Sum_probs=53.8

Q ss_pred             eEEEEEEecCcchHHHHHHHHHHhCCccEEEEEEEecCCeEEEEEEEEeCCCCCChHHHHHHHHHHHHHcCC
Q 028501          129 RSLLYIETADRPGLLVEIMKIIADVNVDVESAEIDTEGLVAKDKFHVSYGGAALNSSLSQVLVNCLRYYLRR  200 (208)
Q Consensus       129 ~~~i~v~~~Dr~GlL~~i~~~l~~~~i~I~~a~i~t~~~~~~~~f~v~~~g~~~~~~~~~~l~~~l~~~l~~  200 (208)
                      +.+|++.|+||||+++.++++|+++|+||...+..+.+++....+.++..     +...+.|+++|.....+
T Consensus         2 ~~vItv~G~DrpGiv~~v~~~l~~~g~ni~d~~~~~~~~~f~~~~~v~~~-----~~~~~~l~~~L~~l~~~   68 (76)
T PF13740_consen    2 QLVITVVGPDRPGIVAAVTGVLAEHGCNIEDSRQAVLGGRFTLIMLVSIP-----EDSLERLESALEELAEE   68 (76)
T ss_dssp             EEEEEEEEE--TTHHHHHHHHHHCTT-EEEEEEEEEETTEEEEEEEEEES-----HHHHHHHHHHHHHHHHH
T ss_pred             EEEEEEEecCCCcHHHHHHHHHHHCCCcEEEEEEEEEcCeEEEEEEEEeC-----cccHHHHHHHHHHHHHH
Confidence            57899999999999999999999999999999999999999988888755     33456777777665433

>cd04870 ACT_PSP_1 CT domains found N-terminal of phosphoserine phosphatase (PSP, SerB)

Probab=98.79  E-value=2.9e-08  Score=67.64  Aligned_cols=47  Identities=19%  Similarity=0.204  Sum_probs=42.3

Q ss_pred             EEEEEecCcchHHHHHHHHHHhCCccEEEEEEEecCCeEEEEEEEEe
Q 028501          131 LLYIETADRPGLLVEIMKIIADVNVDVESAEIDTEGLVAKDKFHVSY  177 (208)
Q Consensus       131 ~i~v~~~Dr~GlL~~i~~~l~~~~i~I~~a~i~t~~~~~~~~f~v~~  177 (208)
                      +++|.|+||||++++++++|+++||||.+.+..+.++.....|.++-
T Consensus         1 ~vtv~G~DrpGiv~~vt~~la~~~~nI~dl~~~~~~~~f~~~~~v~~   47 (75)
T cd04870           1 LITVTGPDRPGLTSALTEVLAAHGVRILDVGQAVIHGRLSLGILVQI   47 (75)
T ss_pred             CEEEEcCCCCCHHHHHHHHHHHCCCCEEecccEEEcCeeEEEEEEEc
Confidence            37899999999999999999999999999999988888777777763

The ACT_PSP_1 CD includes the first of the two ACT domains found N-terminal of phosphoserine phosphatase (PSP, SerB). PSPs belong to the L-2-haloacid dehalogenase-like protein superfamily. PSP is involved in serine metabolism; serine is synthesized from phosphoglycerate through sequential reactions catalyzed by 3-phosphoglycerate dehydrogenase (SerA), 3-phosphoserine aminotransferase (SerC), and SerB. Members of this CD belong to the superfamily of ACT regulatory domains.

>cd04893 ACT_GcvR_1 ACT domains that comprise the Glycine Cleavage System Transcriptional Repressor (GcvR) protein, and other related domains

Probab=98.79  E-value=6.1e-08  Score=66.48  Aligned_cols=62  Identities=13%  Similarity=0.201  Sum_probs=49.5

Q ss_pred             EEEEEEeCCcccHHHHHHHHHHHCCceEEEEEEEecCCeeEEEEEEeeCCCCCCCCCHHHHHHHHHHHHH
Q 028501           15 TIVQLSFGDRLGALIDTMNALKDLGLDVAKGTVNTEGSVKQTKFFITRLDTGRKVEDPDLLERIRLTIIN   84 (208)
Q Consensus        15 ~~v~v~~~DrpGLl~~i~~~L~~~gl~I~~a~i~t~~~~~~d~F~v~~~~~g~~~~~~~~~~~l~~~L~~   84 (208)
                      +.|++.|+||||+++.+++.|+++|+||.+++.+..++.|.-.+.+..+    +    ...+.+++.|.+
T Consensus         2 ~iltv~g~Dr~GiVa~vs~~la~~g~nI~d~~q~~~~~~F~m~~~~~~~----~----~~~~~l~~~l~~   63 (77)
T cd04893           2 LVISALGTDRPGILNELTRAVSESGCNILDSRMAILGTEFALTMLVEGS----W----DAIAKLEAALPG   63 (77)
T ss_pred             EEEEEEeCCCChHHHHHHHHHHHcCCCEEEceeeEEcCEEEEEEEEEec----c----ccHHHHHHHHHH
Confidence            6899999999999999999999999999999999988887544444422    1    124667777766

This CD includes the first of the two ACT domains that comprise the Glycine Cleavage System Transcriptional Repressor (GcvR) protein, and other related domains. The glycine cleavage enzyme system in Escherichia coli provides one-carbon units for cellular methylation reactions. This enzyme system, encoded by the gcvTHP operon and lpd gene, catalyzes the cleavage of glycine into CO2 + NH3 and transfers a one-carbon unit to tetrahydrofolate, producing 5,10-methylenetetrahydrofolate. The gcvTHP operon is activated by the GcvA protein in response to glycine and repressed by a GcvA/GcvR interaction in the absence of glycine. It has been proposed that the co-activator glycine acts through a mechanism of de-repression by binding to GcvR and preventing GcvR from interacting with GcvA to block GcvA's activator function. Evidence also suggests that GcvR int

>PF01842 ACT: ACT domain; InterPro: IPR002912 The ACT domain is found in a variety of contexts and is proposed to be a conserved regulatory binding fold

Probab=98.68  E-value=3.6e-07  Score=59.78  Aligned_cols=61  Identities=18%  Similarity=0.202  Sum_probs=46.5

Q ss_pred             EEEEEEeCCcccHHHHHHHHHHHCCceEEEEEEEecCC--eeEEEEEEeeCCCCCCCCCHHHHHHHHHHHHH
Q 028501           15 TIVQLSFGDRLGALIDTMNALKDLGLDVAKGTVNTEGS--VKQTKFFITRLDTGRKVEDPDLLERIRLTIIN   84 (208)
Q Consensus        15 ~~v~v~~~DrpGLl~~i~~~L~~~gl~I~~a~i~t~~~--~~~d~F~v~~~~~g~~~~~~~~~~~l~~~L~~   84 (208)
                      +.|.|.++||||+|++++++|+++|+||..+...+.++  +....+...+.         ...+.+.+.|++
T Consensus         1 ~~v~v~~~drpG~l~~v~~~la~~~inI~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~l~~   63 (66)
T PF01842_consen    1 YRVRVIVPDRPGILADVTEILADHGINIDSISQSSDKDGVGIVFIVIVVDE---------EDLEKLLEELEA   63 (66)
T ss_dssp             EEEEEEEETSTTHHHHHHHHHHHTTEEEEEEEEEEESSTTEEEEEEEEEEG---------HGHHHHHHHHHH
T ss_pred             CEEEEEcCCCCCHHHHHHHHHHHcCCCHHHeEEEecCCCceEEEEEEECCC---------CCHHHHHHHHHc
Confidence            46889999999999999999999999999999999988  33333333322         334556666655

ACT domains are linked to a wide range of metabolic enzymes that are regulated by amino acid concentration. The archetypical ACT domain is the C-terminal regulatory domain of 3-phosphoglycerate dehydrogenase (3PGDH), which folds with a ferredoxin-like topology. A pair of ACT domains form an eight-stranded antiparallel sheet with two molecules of allosteric inhibitor serine bound in the interface. Biochemical exploration of a few other proteins containing ACT domains supports the suggestions that these domains contain the archetypical ACT structure [].; GO: 0016597 amino acid binding, 0008152 metabolic process; PDB: 3L76_B 2F06_B 3NRB_C 1Y7P_C 2QMX_A 2DT9_A 2ZHO_D 3K5P_A 3TVI_K 3C1M_C ....

>cd04893 ACT_GcvR_1 ACT domains that comprise the Glycine Cleavage System Transcriptional Repressor (GcvR) protein, and other related domains

Probab=98.67  E-value=2.3e-07  Score=63.54  Aligned_cols=48  Identities=17%  Similarity=0.266  Sum_probs=42.6

Q ss_pred             EEEEEEecCcchHHHHHHHHHHhCCccEEEEEEEecCCeEEEEEEEEe
Q 028501          130 SLLYIETADRPGLLVEIMKIIADVNVDVESAEIDTEGLVAKDKFHVSY  177 (208)
Q Consensus       130 ~~i~v~~~Dr~GlL~~i~~~l~~~~i~I~~a~i~t~~~~~~~~f~v~~  177 (208)
                      +++.+.|+||||+++.|+++|+++|+||...+....++....++.++.
T Consensus         2 ~iltv~g~Dr~GiVa~vs~~la~~g~nI~d~~q~~~~~~F~m~~~~~~   49 (77)
T cd04893           2 LVISALGTDRPGILNELTRAVSESGCNILDSRMAILGTEFALTMLVEG   49 (77)
T ss_pred             EEEEEEeCCCChHHHHHHHHHHHcCCCEEEceeeEEcCEEEEEEEEEe
Confidence            689999999999999999999999999999999998887766666653

This CD includes the first of the two ACT domains that comprise the Glycine Cleavage System Transcriptional Repressor (GcvR) protein, and other related domains. The glycine cleavage enzyme system in Escherichia coli provides one-carbon units for cellular methylation reactions. This enzyme system, encoded by the gcvTHP operon and lpd gene, catalyzes the cleavage of glycine into CO2 + NH3 and transfers a one-carbon unit to tetrahydrofolate, producing 5,10-methylenetetrahydrofolate. The gcvTHP operon is activated by the GcvA protein in response to glycine and repressed by a GcvA/GcvR interaction in the absence of glycine. It has been proposed that the co-activator glycine acts through a mechanism of de-repression by binding to GcvR and preventing GcvR from interacting with GcvA to block GcvA's activator function. Evidence also suggests that GcvR int

>cd04870 ACT_PSP_1 CT domains found N-terminal of phosphoserine phosphatase (PSP, SerB)

Probab=98.64  E-value=1.7e-07  Score=63.80  Aligned_cols=63  Identities=11%  Similarity=0.060  Sum_probs=51.0

Q ss_pred             EEEEEeCCcccHHHHHHHHHHHCCceEEEEEEEecCCeeEEEEEEeeCCCCCCCCCHHHHHHHHHHHHHh
Q 028501           16 IVQLSFGDRLGALIDTMNALKDLGLDVAKGTVNTEGSVKQTKFFITRLDTGRKVEDPDLLERIRLTIINN   85 (208)
Q Consensus        16 ~v~v~~~DrpGLl~~i~~~L~~~gl~I~~a~i~t~~~~~~d~F~v~~~~~g~~~~~~~~~~~l~~~L~~~   85 (208)
                      +|+|.++||||++++++++|+++|+||.+.+..+.++.+.-.|.+.-+. +.      ..+.+++.|+..
T Consensus         1 ~vtv~G~DrpGiv~~vt~~la~~~~nI~dl~~~~~~~~f~~~~~v~~p~-~~------~~~~l~~~l~~l   63 (75)
T cd04870           1 LITVTGPDRPGLTSALTEVLAAHGVRILDVGQAVIHGRLSLGILVQIPD-SA------DSEALLKDLLFK   63 (75)
T ss_pred             CEEEEcCCCCCHHHHHHHHHHHCCCCEEecccEEEcCeeEEEEEEEcCC-CC------CHHHHHHHHHHH
Confidence            3789999999999999999999999999999888888777677776543 21      246777777763

The ACT_PSP_1 CD includes the first of the two ACT domains found N-terminal of phosphoserine phosphatase (PSP, SerB). PSPs belong to the L-2-haloacid dehalogenase-like protein superfamily. PSP is involved in serine metabolism; serine is synthesized from phosphoglycerate through sequential reactions catalyzed by 3-phosphoglycerate dehydrogenase (SerA), 3-phosphoserine aminotransferase (SerC), and SerB. Members of this CD belong to the superfamily of ACT regulatory domains.

>PF01842 ACT: ACT domain; InterPro: IPR002912 The ACT domain is found in a variety of contexts and is proposed to be a conserved regulatory binding fold

Probab=98.64  E-value=2.9e-07  Score=60.28  Aligned_cols=39  Identities=23%  Similarity=0.453  Sum_probs=36.4

Q ss_pred             EEEEEEecCcchHHHHHHHHHHhCCccEEEEEEEecCCe
Q 028501          130 SLLYIETADRPGLLVEIMKIIADVNVDVESAEIDTEGLV  168 (208)
Q Consensus       130 ~~i~v~~~Dr~GlL~~i~~~l~~~~i~I~~a~i~t~~~~  168 (208)
                      |.+.+.++||||+|++++.+|+++|+||..+.+.+.++.
T Consensus         1 ~~v~v~~~drpG~l~~v~~~la~~~inI~~~~~~~~~~~   39 (66)
T PF01842_consen    1 YRVRVIVPDRPGILADVTEILADHGINIDSISQSSDKDG   39 (66)
T ss_dssp             EEEEEEEETSTTHHHHHHHHHHHTTEEEEEEEEEEESST
T ss_pred             CEEEEEcCCCCCHHHHHHHHHHHcCCCHHHeEEEecCCC
Confidence            578899999999999999999999999999999998774

ACT domains are linked to a wide range of metabolic enzymes that are regulated by amino acid concentration. The archetypical ACT domain is the C-terminal regulatory domain of 3-phosphoglycerate dehydrogenase (3PGDH), which folds with a ferredoxin-like topology. A pair of ACT domains form an eight-stranded antiparallel sheet with two molecules of allosteric inhibitor serine bound in the interface. Biochemical exploration of a few other proteins containing ACT domains supports the suggestions that these domains contain the archetypical ACT structure [].; GO: 0016597 amino acid binding, 0008152 metabolic process; PDB: 3L76_B 2F06_B 3NRB_C 1Y7P_C 2QMX_A 2DT9_A 2ZHO_D 3K5P_A 3TVI_K 3C1M_C ....

>cd04894 ACT_ACR-like_1 ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein)

Probab=98.61  E-value=1.6e-07  Score=60.71  Aligned_cols=66  Identities=14%  Similarity=0.316  Sum_probs=56.4

Q ss_pred             EEEEEEeCCcccHHHHHHHHHHHCCceEEEEEEEecCCeeEEEEEEeeCCCCCCCCCHHHHHHHHHHHHH
Q 028501           15 TIVQLSFGDRLGALIDTMNALKDLGLDVAKGTVNTEGSVKQTKFFITRLDTGRKVEDPDLLERIRLTIIN   84 (208)
Q Consensus        15 ~~v~v~~~DrpGLl~~i~~~L~~~gl~I~~a~i~t~~~~~~d~F~v~~~~~g~~~~~~~~~~~l~~~L~~   84 (208)
                      ++|+|.|||+.||-.++|+++.+.|++|..+.++|.|.+.+-+|+|.... .. +  +-+++.|++.|.+
T Consensus         1 tvitvnCPDktGLgcdlcr~il~fGl~i~rgd~sTDGkWCyiv~wVv~~~-~~-~--~~rW~lLK~RL~~   66 (69)
T cd04894           1 SVITINCPDKTGLGCDLCRIILEFGLNITRGDDSTDGRWCYIVFWVVPRP-PS-I--KVRWDLLKNRLMS   66 (69)
T ss_pred             CEEEEeCCCccCcccHHHHHHHHhceEEEecccccCCcEEEEEEEEecCC-CC-C--cccHHHHHHHHHh
Confidence            47899999999999999999999999999999999999998899998653 22 2  3467888888766

This CD includes the N-terminal ACT domain of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) have been described, however, the ACR-like sequences in this CD are distinct from those characterized. This CD includes the Oryza sativa ACR-like protein (Os05g0113000) encoded on chromosome 5 and the Arabidopsis thaliana predicted gene product, At2g39570. Members of this CD belong to the superfamily of ACT regulatory domains.

>COG4747 ACT domain-containing protein [General function prediction only]

Probab=98.48  E-value=1.2e-05  Score=58.81  Aligned_cols=112  Identities=17%  Similarity=0.278  Sum_probs=82.2

Q ss_pred             EEEEEEeCCcccHHHHHHHHHHHCCceEEEEEEEecCCeeEEEEEEeeCCCCCCCCCHHHHHHHHHHHHHhhccCCCCch
Q 028501           15 TIVQLSFGDRLGALIDTMNALKDLGLDVAKGTVNTEGSVKQTKFFITRLDTGRKVEDPDLLERIRLTIINNLLKYHPESS   94 (208)
Q Consensus        15 ~~v~v~~~DrpGLl~~i~~~L~~~gl~I~~a~i~t~~~~~~d~F~v~~~~~g~~~~~~~~~~~l~~~L~~~l~~~~~~~~   94 (208)
                      -++.|+..|+||-|+.++++|.+.|+||..-.|.-+++.-+-.++|..+            +.-.+.|+++         
T Consensus         4 KQISvFlENk~GRL~~~~~~L~eagINiRA~tiAdt~dFGIiRmvV~~~------------d~A~~~Lee~---------   62 (142)
T COG4747           4 KQISVFLENKPGRLASVANKLKEAGINIRAFTIADTGDFGIIRMVVDRP------------DEAHSVLEEA---------   62 (142)
T ss_pred             eEEEEEecCCcchHHHHHHHHHHcCCceEEEEeccccCcceEEEEcCCh------------HHHHHHHHHC---------
Confidence            3789999999999999999999999999988888888765444444332            1122344430         


Q ss_pred             hhhhccccccCCCCCcccCCccccEEEEecCCCCeEEEEEEecCcchHHHHHHHHHHhCCccEEEEEEEecCCe-EEEEE
Q 028501           95 EQLAMGEAFGIKAPEKKLDVDIATHIHVKEDGPKRSLLYIETADRPGLLVEIMKIIADVNVDVESAEIDTEGLV-AKDKF  173 (208)
Q Consensus        95 ~~l~~~~~~~~~~~~~~~~~~~~~~V~~~~~~~~~~~i~v~~~Dr~GlL~~i~~~l~~~~i~I~~a~i~t~~~~-~~~~f  173 (208)
                                        .|.    |..      .-++-|...|+||-|..|+.+|.++++|+.++...+.... +.-+|
T Consensus        63 ------------------gF~----Vr~------~dVlaVEmeD~PG~l~~I~~vl~d~diNldYiYAFv~ek~KAlli~  114 (142)
T COG4747          63 ------------------GFT----VRE------TDVLAVEMEDVPGGLSRIAEVLGDADINLDYIYAFVTEKQKALLIV  114 (142)
T ss_pred             ------------------CcE----EEe------eeEEEEEecCCCCcHHHHHHHHhhcCcCceeeeeeeecCceEEEEE
Confidence                              121    111      1478899999999999999999999999999998876553 43444


Q ss_pred             EE
Q 028501          174 HV  175 (208)
Q Consensus       174 ~v  175 (208)
                      .+
T Consensus       115 r~  116 (142)
T COG4747         115 RV  116 (142)
T ss_pred             Eh
Confidence            44

>PRK00194 hypothetical protein; Validated

Probab=98.47  E-value=1.5e-06  Score=61.10  Aligned_cols=48  Identities=13%  Similarity=0.239  Sum_probs=41.9

Q ss_pred             eEEEEEEecCcchHHHHHHHHHHhCCccEEEEEEEecCCeEEEEEEEE
Q 028501          129 RSLLYIETADRPGLLVEIMKIIADVNVDVESAEIDTEGLVAKDKFHVS  176 (208)
Q Consensus       129 ~~~i~v~~~Dr~GlL~~i~~~l~~~~i~I~~a~i~t~~~~~~~~f~v~  176 (208)
                      ++++++.|+||||++++|+++|+++|+||..++..+.++.....+.++
T Consensus         3 ~~~ltv~g~DrpGiva~vt~~la~~g~nI~~~~~~~~~~~~~~~~~v~   50 (90)
T PRK00194          3 KAIITVIGKDKVGIIAGVSTVLAELNVNILDISQTIMDGYFTMIMLVD   50 (90)
T ss_pred             eEEEEEEcCCCCCHHHHHHHHHHHcCCCEEehhhHhhCCeeEEEEEEE
Confidence            589999999999999999999999999999999988777655555554

>cd04872 ACT_1ZPV ACT domain proteins similar to the yet uncharacterized Streptococcus pneumoniae ACT domain protein

Probab=98.42  E-value=2.1e-06  Score=60.21  Aligned_cols=48  Identities=15%  Similarity=0.182  Sum_probs=42.2

Q ss_pred             EEEEEEecCcchHHHHHHHHHHhCCccEEEEEEEecCCeEEEEEEEEe
Q 028501          130 SLLYIETADRPGLLVEIMKIIADVNVDVESAEIDTEGLVAKDKFHVSY  177 (208)
Q Consensus       130 ~~i~v~~~Dr~GlL~~i~~~l~~~~i~I~~a~i~t~~~~~~~~f~v~~  177 (208)
                      +++++.|+||||++++|+++|+++|+||...+..+.++.....+.++-
T Consensus         2 ~vl~i~g~D~pGiva~vt~~la~~g~nI~~~~~~~~~~~f~~~~~v~~   49 (88)
T cd04872           2 AVITVVGKDRVGIVAGVSTKLAELNVNILDISQTIMDGYFTMIMIVDI   49 (88)
T ss_pred             EEEEEEcCCCCCHHHHHHHHHHHcCCCEEechhHhhCCccEEEEEEEe
Confidence            579999999999999999999999999999999987776666666653

This CD, ACT_1ZPV, includes those single ACT domain proteins similar to the yet uncharacterized Streptococcus pneumoniae ACT domain protein (pdb structure 1ZPV). Members of this CD belong to the superfamily of ACT regulatory domains.

>cd04869 ACT_GcvR_2 ACT domains that comprise the Glycine Cleavage System Transcriptional Repressor (GcvR) protein, and other related domains

Probab=98.40  E-value=2.6e-06  Score=58.38  Aligned_cols=36  Identities=25%  Similarity=0.530  Sum_probs=33.9

Q ss_pred             EEEEEecCcchHHHHHHHHHHhCCccEEEEEEEecC
Q 028501          131 LLYIETADRPGLLVEIMKIIADVNVDVESAEIDTEG  166 (208)
Q Consensus       131 ~i~v~~~Dr~GlL~~i~~~l~~~~i~I~~a~i~t~~  166 (208)
                      ++++.|+|+||++++|+++|+++|+||.+++..+.+
T Consensus         1 ~l~v~g~D~~Giv~~it~~l~~~~~nI~~~~~~~~~   36 (81)
T cd04869           1 VVEVVGNDRPGIVHEVTQFLAQRNINIEDLSTETYS   36 (81)
T ss_pred             CEEEEeCCCCCHHHHHHHHHHHcCCCeEEeEeeeec
Confidence            378999999999999999999999999999999876

This CD includes the second of the two ACT domains that comprise the Glycine Cleavage System Transcriptional Repressor (GcvR) protein, and other related domains. The glycine cleavage enzyme system in Escherichia coli provides one-carbon units for cellular methylation reactions. This enzyme system, encoded by the gcvTHP operon and lpd gene, catalyzes the cleavage of glycine into CO2 + NH3 and transfers a one-carbon unit to tetrahydrofolate, producing 5,10-methylenetetrahydrofolate. The gcvTHP operon is activated by the GcvA protein in response to glycine and repressed by a GcvA/GcvR interaction in the absence of glycine. It has been proposed that the co-activator glycine acts through a mechanism of de-repression by binding to GcvR and preventing GcvR from interacting with GcvA to block GcvA's activator function. Evidence also suggests that GcvR in

>COG3830 ACT domain-containing protein [Signal transduction mechanisms]

Probab=98.38  E-value=5e-07  Score=63.03  Aligned_cols=48  Identities=15%  Similarity=0.239  Sum_probs=43.3

Q ss_pred             eEEEEEEecCcchHHHHHHHHHHhCCccEEEEEEEecCCeEEEEEEEE
Q 028501          129 RSLLYIETADRPGLLVEIMKIIADVNVDVESAEIDTEGLVAKDKFHVS  176 (208)
Q Consensus       129 ~~~i~v~~~Dr~GlL~~i~~~l~~~~i~I~~a~i~t~~~~~~~~f~v~  176 (208)
                      ..+|+|.|+||||+.+.|+++|+++|+||.+..-+-..+.....+.+.
T Consensus         3 ~avITV~GkDr~GIva~is~vLAe~~vNIldisQtvm~~~ftm~~lV~   50 (90)
T COG3830           3 RAVITVIGKDRVGIVAAVSRVLAEHGVNILDISQTVMDGFFTMIMLVD   50 (90)
T ss_pred             eEEEEEEcCCCCchhHHHHHHHHHcCCcEEEHHHHHHhhhceeeeEEc
Confidence            478999999999999999999999999999998887777777777775

>PRK11589 gcvR glycine cleavage system transcriptional repressor; Provisional

Probab=98.33  E-value=1.6e-06  Score=69.52  Aligned_cols=50  Identities=18%  Similarity=0.234  Sum_probs=46.9

Q ss_pred             CeEEEEEEecCcchHHHHHHHHHHhCCccEEEEEEEecCCeEEEEEEEEe
Q 028501          128 KRSLLYIETADRPGLLVEIMKIIADVNVDVESAEIDTEGLVAKDKFHVSY  177 (208)
Q Consensus       128 ~~~~i~v~~~Dr~GlL~~i~~~l~~~~i~I~~a~i~t~~~~~~~~f~v~~  177 (208)
                      ++++|++.|+||||+++.|+++|+++||||...+.+..++....++.++.
T Consensus         7 ~~lviTviG~DrpGIVa~vs~~l~~~g~NI~ds~~t~lgg~Fa~i~lvs~   56 (190)
T PRK11589          7 HYLVITALGADRPGIVNTITRHVSSCGCNIEDSRLAMLGEEFTFIMLLSG   56 (190)
T ss_pred             cEEEEEEEcCCCChHHHHHHHHHHHcCCCeeehhhHhhCCceEEEEEEeC
Confidence            57999999999999999999999999999999999999999888888854

>cd04872 ACT_1ZPV ACT domain proteins similar to the yet uncharacterized Streptococcus pneumoniae ACT domain protein

Probab=98.32  E-value=2.5e-06  Score=59.74  Aligned_cols=64  Identities=8%  Similarity=0.105  Sum_probs=49.7

Q ss_pred             EEEEEEeCCcccHHHHHHHHHHHCCceEEEEEEEecCCeeEEEEEEeeCCCCCCCCCHHHHHHHHHHHHH
Q 028501           15 TIVQLSFGDRLGALIDTMNALKDLGLDVAKGTVNTEGSVKQTKFFITRLDTGRKVEDPDLLERIRLTIIN   84 (208)
Q Consensus        15 ~~v~v~~~DrpGLl~~i~~~L~~~gl~I~~a~i~t~~~~~~d~F~v~~~~~g~~~~~~~~~~~l~~~L~~   84 (208)
                      ..|++.|+|+||+++++++.|+++|+||.+.+..+.++.+.-.+.+..+  +..    ...+.+++.|..
T Consensus         2 ~vl~i~g~D~pGiva~vt~~la~~g~nI~~~~~~~~~~~f~~~~~v~~~--~~~----~~~~~L~~~l~~   65 (88)
T cd04872           2 AVITVVGKDRVGIVAGVSTKLAELNVNILDISQTIMDGYFTMIMIVDIS--ESN----LDFAELQEELEE   65 (88)
T ss_pred             EEEEEEcCCCCCHHHHHHHHHHHcCCCEEechhHhhCCccEEEEEEEeC--CCC----CCHHHHHHHHHH
Confidence            4789999999999999999999999999999999987766555555533  211    124677777776

This CD, ACT_1ZPV, includes those single ACT domain proteins similar to the yet uncharacterized Streptococcus pneumoniae ACT domain protein (pdb structure 1ZPV). Members of this CD belong to the superfamily of ACT regulatory domains.

>cd04875 ACT_F4HF-DF N-terminal ACT domain of formyltetrahydrofolate deformylase (F4HF-DF; formyltetrahydrofolate hydrolase)

Probab=98.31  E-value=2.5e-06  Score=57.69  Aligned_cols=65  Identities=17%  Similarity=0.127  Sum_probs=44.0

Q ss_pred             EEEEEeCCcccHHHHHHHHHHHCCceEEEEEEEecCCeeEEEEEEeeCCCCCCCCCHHHHHHHHHHHHH
Q 028501           16 IVQLSFGDRLGALIDTMNALKDLGLDVAKGTVNTEGSVKQTKFFITRLDTGRKVEDPDLLERIRLTIIN   84 (208)
Q Consensus        16 ~v~v~~~DrpGLl~~i~~~L~~~gl~I~~a~i~t~~~~~~d~F~v~~~~~g~~~~~~~~~~~l~~~L~~   84 (208)
                      +|++.|+||||++++|++.|+++|+||.+.+.++.....  .|++.-.  ......+-..+.+++.|+.
T Consensus         1 ii~v~g~D~~Giv~~it~~l~~~g~nI~~~~~~~~~~~~--~f~~~~~--~~~~~~~~~~~~l~~~l~~   65 (74)
T cd04875           1 ILTLSCPDRPGIVAAVSGFLAEHGGNIVESDQFVDPDSG--RFFMRVE--FELEGFDLSREALEAAFAP   65 (74)
T ss_pred             CEEEEcCCCCCHHHHHHHHHHHcCCCEEeeeeeecCCCC--eEEEEEE--EEeCCCCCCHHHHHHHHHH
Confidence            478999999999999999999999999999998743321  1333221  1110000124677777776

This CD includes the N-terminal ACT domain of formyltetrahydrofolate deformylase (F4HF-DF; formyltetrahydrofolate hydrolase) which catalyzes the hydrolysis of 10-formyltetrahydrofolate (formyl-FH4) to FH4 and formate. Formyl-FH4 hydrolase generates the formate that is used by purT-encoded 5'-phosphoribosylglycinamide transformylase for step three of de novo purine nucleotide synthesis. Formyl-FH4 hydrolase, a hexamer which is activated by methionine and inhibited by glycine, is proposed to regulate the balance FH4 and C1-FH4 in response to changing growth conditions. Members of this CD belong to the superfamily of ACT regulatory domains.

>cd04869 ACT_GcvR_2 ACT domains that comprise the Glycine Cleavage System Transcriptional Repressor (GcvR) protein, and other related domains

Probab=98.31  E-value=6.4e-06  Score=56.42  Aligned_cols=62  Identities=15%  Similarity=0.204  Sum_probs=46.3

Q ss_pred             EEEEEeCCcccHHHHHHHHHHHCCceEEEEEEEecC------CeeEEEEEEeeCCCCCCCCCHHHHHHHHHHHHH
Q 028501           16 IVQLSFGDRLGALIDTMNALKDLGLDVAKGTVNTEG------SVKQTKFFITRLDTGRKVEDPDLLERIRLTIIN   84 (208)
Q Consensus        16 ~v~v~~~DrpGLl~~i~~~L~~~gl~I~~a~i~t~~------~~~~d~F~v~~~~~g~~~~~~~~~~~l~~~L~~   84 (208)
                      .|++.|+|+||++++|++.|+++|+||.+.+..+.+      +.+.-.+.+..+. +      .....+++.|+.
T Consensus         1 ~l~v~g~D~~Giv~~it~~l~~~~~nI~~~~~~~~~~~~~~~~~~~~~~~v~~p~-~------~~~~~l~~~l~~   68 (81)
T cd04869           1 VVEVVGNDRPGIVHEVTQFLAQRNINIEDLSTETYSAPMSGTPLFKAQATLALPA-G------TDLDALREELEE   68 (81)
T ss_pred             CEEEEeCCCCCHHHHHHHHHHHcCCCeEEeEeeeecCCCCCcceEEEEEEEecCC-C------CCHHHHHHHHHH
Confidence            378999999999999999999999999999999987      3343334444331 1      124667777766

This CD includes the second of the two ACT domains that comprise the Glycine Cleavage System Transcriptional Repressor (GcvR) protein, and other related domains. The glycine cleavage enzyme system in Escherichia coli provides one-carbon units for cellular methylation reactions. This enzyme system, encoded by the gcvTHP operon and lpd gene, catalyzes the cleavage of glycine into CO2 + NH3 and transfers a one-carbon unit to tetrahydrofolate, producing 5,10-methylenetetrahydrofolate. The gcvTHP operon is activated by the GcvA protein in response to glycine and repressed by a GcvA/GcvR interaction in the absence of glycine. It has been proposed that the co-activator glycine acts through a mechanism of de-repression by binding to GcvR and preventing GcvR from interacting with GcvA to block GcvA's activator function. Evidence also suggests that GcvR in

>PRK00194 hypothetical protein; Validated

Probab=98.30  E-value=3.5e-06  Score=59.18  Aligned_cols=65  Identities=9%  Similarity=0.135  Sum_probs=49.0

Q ss_pred             eEEEEEEeCCcccHHHHHHHHHHHCCceEEEEEEEecCCeeEEEEEEeeCCCCCCCCCHHHHHHHHHHHHH
Q 028501           14 ATIVQLSFGDRLGALIDTMNALKDLGLDVAKGTVNTEGSVKQTKFFITRLDTGRKVEDPDLLERIRLTIIN   84 (208)
Q Consensus        14 ~~~v~v~~~DrpGLl~~i~~~L~~~gl~I~~a~i~t~~~~~~d~F~v~~~~~g~~~~~~~~~~~l~~~L~~   84 (208)
                      ...|++.|+|+||+++++++.|+++|+||.+.+..+.++.+.-.+.+.-+  +.+.    ..+.+++.|.+
T Consensus         3 ~~~ltv~g~DrpGiva~vt~~la~~g~nI~~~~~~~~~~~~~~~~~v~~~--~~~~----~~~~l~~~l~~   67 (90)
T PRK00194          3 KAIITVIGKDKVGIIAGVSTVLAELNVNILDISQTIMDGYFTMIMLVDIS--ESKK----DFAELKEELEE   67 (90)
T ss_pred             eEEEEEEcCCCCCHHHHHHHHHHHcCCCEEehhhHhhCCeeEEEEEEEec--CCCC----CHHHHHHHHHH
Confidence            57899999999999999999999999999999988877766544454432  2111    13566666665

>cd04875 ACT_F4HF-DF N-terminal ACT domain of formyltetrahydrofolate deformylase (F4HF-DF; formyltetrahydrofolate hydrolase)

Probab=98.26  E-value=1.7e-05  Score=53.63  Aligned_cols=35  Identities=17%  Similarity=0.423  Sum_probs=32.6

Q ss_pred             EEEEEecCcchHHHHHHHHHHhCCccEEEEEEEec
Q 028501          131 LLYIETADRPGLLVEIMKIIADVNVDVESAEIDTE  165 (208)
Q Consensus       131 ~i~v~~~Dr~GlL~~i~~~l~~~~i~I~~a~i~t~  165 (208)
                      ++++.|+||||++++|+++|+++|+||...+..+.
T Consensus         1 ii~v~g~D~~Giv~~it~~l~~~g~nI~~~~~~~~   35 (74)
T cd04875           1 ILTLSCPDRPGIVAAVSGFLAEHGGNIVESDQFVD   35 (74)
T ss_pred             CEEEEcCCCCCHHHHHHHHHHHcCCCEEeeeeeec
Confidence            37899999999999999999999999999999874

This CD includes the N-terminal ACT domain of formyltetrahydrofolate deformylase (F4HF-DF; formyltetrahydrofolate hydrolase) which catalyzes the hydrolysis of 10-formyltetrahydrofolate (formyl-FH4) to FH4 and formate. Formyl-FH4 hydrolase generates the formate that is used by purT-encoded 5'-phosphoribosylglycinamide transformylase for step three of de novo purine nucleotide synthesis. Formyl-FH4 hydrolase, a hexamer which is activated by methionine and inhibited by glycine, is proposed to regulate the balance FH4 and C1-FH4 in response to changing growth conditions. Members of this CD belong to the superfamily of ACT regulatory domains.

>PRK06027 purU formyltetrahydrofolate deformylase; Reviewed

Probab=98.11  E-value=1.9e-05  Score=67.29  Aligned_cols=48  Identities=17%  Similarity=0.242  Sum_probs=40.0

Q ss_pred             CeEEEEEEecCcchHHHHHHHHHHhCCccEEEEEEEe--cCCeEEEEEEE
Q 028501          128 KRSLLYIETADRPGLLVEIMKIIADVNVDVESAEIDT--EGLVAKDKFHV  175 (208)
Q Consensus       128 ~~~~i~v~~~Dr~GlL~~i~~~l~~~~i~I~~a~i~t--~~~~~~~~f~v  175 (208)
                      +.+++++.|.||||++++|+++|+++|+||...+..+  .++.....+.+
T Consensus         5 ~~~vitv~G~DrpGIVa~Vt~~La~~g~NI~d~s~~~~~~~g~F~m~i~v   54 (286)
T PRK06027          5 QRYVLTLSCPDRPGIVAAVSNFLYEHGGNIVDADQFVDPETGRFFMRVEF   54 (286)
T ss_pred             ceEEEEEECCCCCcHHHHHHHHHHHCCCCEEEceeEEcCCCCeEEEEEEE
Confidence            3689999999999999999999999999999999998  55543333333

>PF13291 ACT_4: ACT domain; PDB: 2KO1_B 3IBW_A

Probab=98.09  E-value=2.5e-05  Score=53.50  Aligned_cols=48  Identities=33%  Similarity=0.483  Sum_probs=39.0

Q ss_pred             eEEEEEEecCcchHHHHHHHHHHhCCccEEEEEEEec--CCeEEEEEEEE
Q 028501          129 RSLLYIETADRPGLLVEIMKIIADVNVDVESAEIDTE--GLVAKDKFHVS  176 (208)
Q Consensus       129 ~~~i~v~~~Dr~GlL~~i~~~l~~~~i~I~~a~i~t~--~~~~~~~f~v~  176 (208)
                      .+.+.|.+.||||+|++|+++|++.|+||.++++.+.  ++.+.-.|.+.
T Consensus         6 ~~~l~i~~~dr~GlL~dI~~~i~~~~~nI~~i~~~~~~~~~~~~~~l~v~   55 (80)
T PF13291_consen    6 PVRLRIEAEDRPGLLADITSVISENGVNIRSINARTNKDDGTARITLTVE   55 (80)
T ss_dssp             EEEEEEEEE--TTHHHHHHHHHHCSSSEEEEEEEEE--ETTEEEEEEEEE
T ss_pred             EEEEEEEEEcCCCHHHHHHHHHHHCCCCeEEEEeEEeccCCEEEEEEEEE
Confidence            4789999999999999999999999999999999985  45566666664

>PF13291 ACT_4: ACT domain; PDB: 2KO1_B 3IBW_A

Probab=97.96  E-value=8.7e-05  Score=50.76  Aligned_cols=63  Identities=16%  Similarity=0.242  Sum_probs=44.5

Q ss_pred             EEEEEEeCCcccHHHHHHHHHHHCCceEEEEEEEecC-C-eeEEEEEEeeCCCCCCCCCHHHHHHHHHHHHH
Q 028501           15 TIVQLSFGDRLGALIDTMNALKDLGLDVAKGTVNTEG-S-VKQTKFFITRLDTGRKVEDPDLLERIRLTIIN   84 (208)
Q Consensus        15 ~~v~v~~~DrpGLl~~i~~~L~~~gl~I~~a~i~t~~-~-~~~d~F~v~~~~~g~~~~~~~~~~~l~~~L~~   84 (208)
                      +.|.|.+.||||+|++|+.++++.|+||...++.+.. + .+.-.|.+.-.       +.+.++.+.+.|++
T Consensus         7 ~~l~i~~~dr~GlL~dI~~~i~~~~~nI~~i~~~~~~~~~~~~~~l~v~V~-------d~~~L~~ii~~L~~   71 (80)
T PF13291_consen    7 VRLRIEAEDRPGLLADITSVISENGVNIRSINARTNKDDGTARITLTVEVK-------DLEHLNQIIRKLRQ   71 (80)
T ss_dssp             EEEEEEEE--TTHHHHHHHHHHCSSSEEEEEEEEE--ETTEEEEEEEEEES-------SHHHHHHHHHHHCT
T ss_pred             EEEEEEEEcCCCHHHHHHHHHHHCCCCeEEEEeEEeccCCEEEEEEEEEEC-------CHHHHHHHHHHHHC
Confidence            5799999999999999999999999999999999964 4 45445555543       23455555555443

>TIGR00655 PurU formyltetrahydrofolate deformylase

Probab=97.92  E-value=0.00011  Score=62.51  Aligned_cols=48  Identities=19%  Similarity=0.239  Sum_probs=39.4

Q ss_pred             EEEEEecCcchHHHHHHHHHHhCCccEEEEEEEecC--CeEEEEEEEEeC
Q 028501          131 LLYIETADRPGLLVEIMKIIADVNVDVESAEIDTEG--LVAKDKFHVSYG  178 (208)
Q Consensus       131 ~i~v~~~Dr~GlL~~i~~~l~~~~i~I~~a~i~t~~--~~~~~~f~v~~~  178 (208)
                      ++++.|+||||+++.||.+|+++|+||..++.....  +....++.++-.
T Consensus         2 ~itv~g~D~~GIVA~Vt~~La~~g~NI~d~sq~~~~~~~~F~mr~~v~~~   51 (280)
T TIGR00655         2 ILLVSCPDQKGLVAAISTFIAKHGANIISNDQHTDPETGRFFMRVEFQLE   51 (280)
T ss_pred             EEEEECCCCCChHHHHHHHHHHCCCCEEeeeEEEcCCCCeEEEEEEEEeC
Confidence            589999999999999999999999999999988753  455555555533

This model describes formyltetrahydrofolate deformylases. The enzyme is a homohexamer. Sequences from a related enzyme formyl tetrahydrofolate-specific enzyme, phosphoribosylglycinamide formyltransferase, serve as an outgroup for phylogenetic analysis. Putative members of this family, scoring below the trusted cutoff, include a sequence from Rhodobacter capsulatus that lacks an otherwise conserved C-terminal region.

>PRK06027 purU formyltetrahydrofolate deformylase; Reviewed

Probab=97.90  E-value=7.1e-05  Score=63.78  Aligned_cols=66  Identities=20%  Similarity=0.129  Sum_probs=49.8

Q ss_pred             CeEEEEEEeCCcccHHHHHHHHHHHCCceEEEEEEEe--cCCeeEEEEEEeeCCCCCCCCCHHHHHHHHHHHHH
Q 028501           13 DATIVQLSFGDRLGALIDTMNALKDLGLDVAKGTVNT--EGSVKQTKFFITRLDTGRKVEDPDLLERIRLTIIN   84 (208)
Q Consensus        13 ~~~~v~v~~~DrpGLl~~i~~~L~~~gl~I~~a~i~t--~~~~~~d~F~v~~~~~g~~~~~~~~~~~l~~~L~~   84 (208)
                      ....|+|.|+||||+++.++++|+++|+||.+.+..+  .++.|.-.+.+...  ..+    ...+.|++.|++
T Consensus         5 ~~~vitv~G~DrpGIVa~Vt~~La~~g~NI~d~s~~~~~~~g~F~m~i~v~~~--~~~----~~~~~L~~~L~~   72 (286)
T PRK06027          5 QRYVLTLSCPDRPGIVAAVSNFLYEHGGNIVDADQFVDPETGRFFMRVEFEGD--GLI----FNLETLRADFAA   72 (286)
T ss_pred             ceEEEEEECCCCCcHHHHHHHHHHHCCCCEEEceeEEcCCCCeEEEEEEEEeC--CCC----CCHHHHHHHHHH
Confidence            4578999999999999999999999999999999999  66654433444321  111    225778887776

>PRK13010 purU formyltetrahydrofolate deformylase; Reviewed

Probab=97.84  E-value=9.5e-05  Score=63.06  Aligned_cols=44  Identities=16%  Similarity=0.078  Sum_probs=37.2

Q ss_pred             CCeEEEEEEeCCcccHHHHHHHHHHHCCceEEEEEEE--ecCCeeE
Q 028501           12 SDATIVQLSFGDRLGALIDTMNALKDLGLDVAKGTVN--TEGSVKQ   55 (208)
Q Consensus        12 ~~~~~v~v~~~DrpGLl~~i~~~L~~~gl~I~~a~i~--t~~~~~~   55 (208)
                      .....|+|.|+||||+.+.|++.|+++|+||.+.+.+  +..+.++
T Consensus         7 m~~~iitv~G~Dr~GIVA~Vs~~Lae~g~NI~disq~~d~~~~~ff   52 (289)
T PRK13010          7 SPSYVLTLACPSAPGIVAAVSGFLAEKGCYIVELTQFDDDESGRFF   52 (289)
T ss_pred             ccCEEEEEECCCCCCcHHHHHHHHHHCCCCEEecccccccccCcEE
Confidence            3456899999999999999999999999999999997  3344443

>cd04887 ACT_MalLac-Enz ACT_MalLac-Enz CD includes the N-terminal ACT domain of putative NAD-dependent malic enzyme 1, Bacillus subtilis YqkI and related domains

Probab=97.83  E-value=0.0003  Score=47.06  Aligned_cols=61  Identities=16%  Similarity=0.209  Sum_probs=45.7

Q ss_pred             EEEEeCCcccHHHHHHHHHHHCCceEEEEEEEecCC-eeEEEEEEeeCCCCCCCCCHHHHHHHHHHHHH
Q 028501           17 VQLSFGDRLGALIDTMNALKDLGLDVAKGTVNTEGS-VKQTKFFITRLDTGRKVEDPDLLERIRLTIIN   84 (208)
Q Consensus        17 v~v~~~DrpGLl~~i~~~L~~~gl~I~~a~i~t~~~-~~~d~F~v~~~~~g~~~~~~~~~~~l~~~L~~   84 (208)
                      +.|.++|+||+|++|+.++++.|.||......+..+ .+.-.|.+.-.       +.+.++.+.+.|+.
T Consensus         2 l~v~~~d~~g~L~~i~~~i~~~~~nI~~v~~~~~~~~~~~~~~~vev~-------~~~~l~~i~~~L~~   63 (74)
T cd04887           2 LRLELPNRPGMLGRVTTAIGEAGGDIGAIDLVEQGRDYTVRDITVDAP-------SEEHAETIVAAVRA   63 (74)
T ss_pred             EEEEeCCCCchHHHHHHHHHHcCCcEEEEEEEEecCCEEEEEEEEEcC-------CHHHHHHHHHHHhc
Confidence            678999999999999999999999999888877643 44444555533       23566666666655

The ACT_MalLac-Enz CD includes the N-terminal ACT domain of putative NAD-dependent malic enzyme 1, Bacillus subtilis YqkI, a malolactic enzyme (MalLac-Enz) which converts malate to lactate, and other related ACT domains. The yqkJ product is predicted to convert malate directly to lactate, as opposed to related malic enzymes that convert malate to pyruvate. Members of this CD belong to the superfamily of ACT regulatory domains.

>TIGR00655 PurU formyltetrahydrofolate deformylase

Probab=97.83  E-value=0.00016  Score=61.41  Aligned_cols=63  Identities=11%  Similarity=0.086  Sum_probs=46.4

Q ss_pred             EEEEEeCCcccHHHHHHHHHHHCCceEEEEEEEecC--CeeEEEEEEeeCCCCCCCCCHHHHHHHHHHHHH
Q 028501           16 IVQLSFGDRLGALIDTMNALKDLGLDVAKGTVNTEG--SVKQTKFFITRLDTGRKVEDPDLLERIRLTIIN   84 (208)
Q Consensus        16 ~v~v~~~DrpGLl~~i~~~L~~~gl~I~~a~i~t~~--~~~~d~F~v~~~~~g~~~~~~~~~~~l~~~L~~   84 (208)
                      .|+|.|+||||+++.+++.|+++|+||.+.+.+...  +.|.-.+.+..+  +...    ..+.+++.|.+
T Consensus         2 ~itv~g~D~~GIVA~Vt~~La~~g~NI~d~sq~~~~~~~~F~mr~~v~~~--~~~~----~~~~l~~~l~~   66 (280)
T TIGR00655         2 ILLVSCPDQKGLVAAISTFIAKHGANIISNDQHTDPETGRFFMRVEFQLE--GFRL----EESSLLAAFKS   66 (280)
T ss_pred             EEEEECCCCCChHHHHHHHHHHCCCCEEeeeEEEcCCCCeEEEEEEEEeC--CCCC----CHHHHHHHHHH
Confidence            589999999999999999999999999999999864  555544444433  2112    23566666655

This model describes formyltetrahydrofolate deformylases. The enzyme is a homohexamer. Sequences from a related enzyme formyl tetrahydrofolate-specific enzyme, phosphoribosylglycinamide formyltransferase, serve as an outgroup for phylogenetic analysis. Putative members of this family, scoring below the trusted cutoff, include a sequence from Rhodobacter capsulatus that lacks an otherwise conserved C-terminal region.

>PRK13011 formyltetrahydrofolate deformylase; Reviewed

Probab=97.81  E-value=0.00014  Score=61.96  Aligned_cols=37  Identities=8%  Similarity=0.181  Sum_probs=34.6

Q ss_pred             eEEEEEEecCcchHHHHHHHHHHhCCccEEEEEEEec
Q 028501          129 RSLLYIETADRPGLLVEIMKIIADVNVDVESAEIDTE  165 (208)
Q Consensus       129 ~~~i~v~~~Dr~GlL~~i~~~l~~~~i~I~~a~i~t~  165 (208)
                      .+.++|.|.||||+++.||++|+++|+||..++..+.
T Consensus         7 ~~vitv~G~DrpGIVa~VT~~La~~~vNI~dls~~~~   43 (286)
T PRK13011          7 TFVLTLSCPSAAGIVAAVTGFLAEHGCYITELHSFDD   43 (286)
T ss_pred             eEEEEEEeCCCCCHHHHHHHHHHhCCCCEEEeeeeec
Confidence            5789999999999999999999999999999998754

>cd04905 ACT_CM-PDT C-terminal ACT domain of the bifunctional chorismate mutase-prephenate dehydratase (CM-PDT) enzyme and the prephenate dehydratase (PDT) enzyme

Probab=97.78  E-value=0.00039  Score=47.58  Aligned_cols=51  Identities=14%  Similarity=0.328  Sum_probs=41.7

Q ss_pred             EEEEEEecCcchHHHHHHHHHHhCCccEEEEEEEecCCe-EEEEEEEEeCCC
Q 028501          130 SLLYIETADRPGLLVEIMKIIADVNVDVESAEIDTEGLV-AKDKFHVSYGGA  180 (208)
Q Consensus       130 ~~i~v~~~Dr~GlL~~i~~~l~~~~i~I~~a~i~t~~~~-~~~~f~v~~~g~  180 (208)
                      +.+.+...|+||.|++|...|+++|+||.+......++. ..-.|+++-+|.
T Consensus         2 ~sl~~~~~d~~G~L~~il~~f~~~~ini~~i~s~p~~~~~~~~~f~vd~~~~   53 (80)
T cd04905           2 TSIVFTLPNKPGALYDVLGVFAERGINLTKIESRPSKGGLWEYVFFIDFEGH   53 (80)
T ss_pred             EEEEEEECCCCCHHHHHHHHHHHCCcCEEEEEEEEcCCCCceEEEEEEEECC
Confidence            456777889999999999999999999999988776543 445788876665

The C-terminal ACT domain of the bifunctional chorismate mutase-prephenate dehydratase (CM-PDT) enzyme and the prephenate dehydratase (PDT) enzyme, found in plants, fungi, bacteria, and archaea. The P-protein of E. coli (CM-PDT, PheA) catalyzes the conversion of chorismate to prephenate and then the decarboxylation and dehydration to form phenylpyruvate. These are the first two steps in the biosynthesis of L-Phe and L-Tyr via the shikimate pathway in microorganisms and plants. The E. coli P-protein (CM-PDT) has three domains with an N-terminal domain with chorismate mutase activity, a middle domain with prephenate dehydratase activity, and an ACT regulatory C-terminal domain. The prephenate dehydratase enzyme has a PDT and ACT domain. The ACT domain is essential to bring about the negative allosteric regulation by L-Phe bindi

>PRK13010 purU formyltetrahydrofolate deformylase; Reviewed

Probab=97.76  E-value=0.00018  Score=61.35  Aligned_cols=48  Identities=10%  Similarity=0.098  Sum_probs=38.4

Q ss_pred             eEEEEEEecCcchHHHHHHHHHHhCCccEEEEEEE--ecCCeEEEEEEEE
Q 028501          129 RSLLYIETADRPGLLVEIMKIIADVNVDVESAEID--TEGLVAKDKFHVS  176 (208)
Q Consensus       129 ~~~i~v~~~Dr~GlL~~i~~~l~~~~i~I~~a~i~--t~~~~~~~~f~v~  176 (208)
                      .++|+|.|+||||+++.||.+|+++|+||..++..  +..+....++.+.
T Consensus         9 ~~iitv~G~Dr~GIVA~Vs~~Lae~g~NI~disq~~d~~~~~ffm~i~~~   58 (289)
T PRK13010          9 SYVLTLACPSAPGIVAAVSGFLAEKGCYIVELTQFDDDESGRFFMRVSFH   58 (289)
T ss_pred             CEEEEEECCCCCCcHHHHHHHHHHCCCCEEecccccccccCcEEEEEEEE
Confidence            57899999999999999999999999999999986  3334333333343

>cd04887 ACT_MalLac-Enz ACT_MalLac-Enz CD includes the N-terminal ACT domain of putative NAD-dependent malic enzyme 1, Bacillus subtilis YqkI and related domains

Probab=97.75  E-value=0.0002  Score=47.99  Aligned_cols=45  Identities=22%  Similarity=0.412  Sum_probs=36.8

Q ss_pred             EEEEecCcchHHHHHHHHHHhCCccEEEEEEEecC-CeEEEEEEEE
Q 028501          132 LYIETADRPGLLVEIMKIIADVNVDVESAEIDTEG-LVAKDKFHVS  176 (208)
Q Consensus       132 i~v~~~Dr~GlL~~i~~~l~~~~i~I~~a~i~t~~-~~~~~~f~v~  176 (208)
                      +.+.+.||||+|++|+.++++.|+||.++...+.. +.+...|.+.
T Consensus         2 l~v~~~d~~g~L~~i~~~i~~~~~nI~~v~~~~~~~~~~~~~~~ve   47 (74)
T cd04887           2 LRLELPNRPGMLGRVTTAIGEAGGDIGAIDLVEQGRDYTVRDITVD   47 (74)
T ss_pred             EEEEeCCCCchHHHHHHHHHHcCCcEEEEEEEEecCCEEEEEEEEE
Confidence            68899999999999999999999999999987654 4444445553

The ACT_MalLac-Enz CD includes the N-terminal ACT domain of putative NAD-dependent malic enzyme 1, Bacillus subtilis YqkI, a malolactic enzyme (MalLac-Enz) which converts malate to lactate, and other related ACT domains. The yqkJ product is predicted to convert malate directly to lactate, as opposed to related malic enzymes that convert malate to pyruvate. Members of this CD belong to the superfamily of ACT regulatory domains.

>cd04889 ACT_PDH-BS-like C-terminal ACT domain of the monofunctional, NAD dependent, prephenate dehydrogenase (PDH) enzyme that catalyzes the formation of 4-hydroxyphenylpyruvate from prephenate

Probab=97.70  E-value=0.00017  Score=45.79  Aligned_cols=46  Identities=20%  Similarity=0.351  Sum_probs=38.6

Q ss_pred             EEEEecCcchHHHHHHHHHHhCCccEEEEEEEecC-CeEEEEEEEEe
Q 028501          132 LYIETADRPGLLVEIMKIIADVNVDVESAEIDTEG-LVAKDKFHVSY  177 (208)
Q Consensus       132 i~v~~~Dr~GlL~~i~~~l~~~~i~I~~a~i~t~~-~~~~~~f~v~~  177 (208)
                      +.+...|+||.|.+++..|.++|+||.++.+...+ +.+...|.+++
T Consensus         1 ~~v~~~d~~G~l~~i~~~l~~~~inI~~~~~~~~~~~~~~~~~~v~~   47 (56)
T cd04889           1 LSVFVENKPGRLAEVTEILAEAGINIKAISIAETRGEFGILRLIFSD   47 (56)
T ss_pred             CEEEeCCCCChHHHHHHHHHHcCCCEeeEEEEEccCCcEEEEEEECC
Confidence            35788999999999999999999999999988765 55666777753

Included in this CD is the C-terminal ACT domain of the monofunctional, NAD dependent, prephenate dehydrogenase (PDH) enzyme that catalyzes the formation of 4-hydroxyphenylpyruvate from prephenate, found in Bacillus subtilis (BS) and other Firmicutes, Deinococci, and Bacteroidetes. PDH is the first enzyme in the aromatic amino acid pathway specific for the biosynthesis of tyrosine. This enzyme is feedback inhibited by tyrosine in B. subtilis and other microorganisms. Both phenylalanine and tryptophan have been shown to be inhibitors of this activity in B. subtilis. Bifunctional chorismate mutase-PDH (TyrA) enzymes such as those seen in Escherichia coli do not contain an ACT domain. Also included in this CD is the N-terminal ACT domain of a novel protein composed almost entirely of two tandem A

>COG3830 ACT domain-containing protein [Signal transduction mechanisms]

Probab=97.69  E-value=6.8e-05  Score=52.40  Aligned_cols=67  Identities=9%  Similarity=0.102  Sum_probs=47.7

Q ss_pred             eEEEEEEeCCcccHHHHHHHHHHHCCceEEEEEEEecCCeeEEEEEEeeCCCCCCCCCHHHHHHHHHHHHHhh
Q 028501           14 ATIVQLSFGDRLGALIDTMNALKDLGLDVAKGTVNTEGSVKQTKFFITRLDTGRKVEDPDLLERIRLTIINNL   86 (208)
Q Consensus        14 ~~~v~v~~~DrpGLl~~i~~~L~~~gl~I~~a~i~t~~~~~~d~F~v~~~~~g~~~~~~~~~~~l~~~L~~~l   86 (208)
                      ..+++|.++||||+.+.++++|+++|+||.+-...-..+++--.+.|..+.  ..    .....+++.|....
T Consensus         3 ~avITV~GkDr~GIva~is~vLAe~~vNIldisQtvm~~~ftm~~lV~~~~--~~----~d~~~lr~~l~~~~   69 (90)
T COG3830           3 RAVITVIGKDRVGIVAAVSRVLAEHGVNILDISQTVMDGFFTMIMLVDISK--EV----VDFAALRDELAAEG   69 (90)
T ss_pred             eEEEEEEcCCCCchhHHHHHHHHHcCCcEEEHHHHHHhhhceeeeEEcCCh--Hh----ccHHHHHHHHHHHH
Confidence            468999999999999999999999999999777666667664445554331  11    22355666655533

>cd04908 ACT_Bt0572_1 N-terminal ACT domain of a novel protein composed almost entirely of two tandem ACT domains

Probab=97.64  E-value=0.00028  Score=46.46  Aligned_cols=45  Identities=13%  Similarity=0.335  Sum_probs=37.2

Q ss_pred             EEEEEEecCcchHHHHHHHHHHhCCccEEEEEEEecCCeEEEEEEEE
Q 028501          130 SLLYIETADRPGLLVEIMKIIADVNVDVESAEIDTEGLVAKDKFHVS  176 (208)
Q Consensus       130 ~~i~v~~~Dr~GlL~~i~~~l~~~~i~I~~a~i~t~~~~~~~~f~v~  176 (208)
                      ..+.|..+|+||.|++|+..|+++|+||.++.+...++.  ..+.+.
T Consensus         2 ~ri~v~v~d~pG~La~v~~~l~~~~inI~~i~~~~~~~~--~~~rl~   46 (66)
T cd04908           2 KQLSVFLENKPGRLAAVTEILSEAGINIRALSIADTSEF--GILRLI   46 (66)
T ss_pred             EEEEEEEcCCCChHHHHHHHHHHCCCCEEEEEEEecCCC--CEEEEE
Confidence            357888999999999999999999999999998776553  444443

Included in this CD is the N-terminal ACT domain of a novel protein composed almost entirely of two tandem ACT domains as seen in the uncharacterized structure (pdb 2F06) of the Bt0572 protein from Bacteroides thetaiotaomicron and related ACT domains. These tandem ACT domain proteins belong to the superfamily of ACT regulatory domains.

>PRK13011 formyltetrahydrofolate deformylase; Reviewed

Probab=97.64  E-value=0.00049  Score=58.66  Aligned_cols=65  Identities=12%  Similarity=0.063  Sum_probs=46.7

Q ss_pred             CeEEEEEEeCCcccHHHHHHHHHHHCCceEEEEEEEecCC--eeEEEEEEeeCCCCCCCCCHHHHHHHHHHHHH
Q 028501           13 DATIVQLSFGDRLGALIDTMNALKDLGLDVAKGTVNTEGS--VKQTKFFITRLDTGRKVEDPDLLERIRLTIIN   84 (208)
Q Consensus        13 ~~~~v~v~~~DrpGLl~~i~~~L~~~gl~I~~a~i~t~~~--~~~d~F~v~~~~~g~~~~~~~~~~~l~~~L~~   84 (208)
                      ....|+|.|+||||+++.+++.|+++|+||.+.+..+...  .|.-.+.+..+. +.      ..+.|++.|.+
T Consensus         6 ~~~vitv~G~DrpGIVa~VT~~La~~~vNI~dls~~~~~~~~~F~m~~~~~~p~-~~------~~~~L~~~L~~   72 (286)
T PRK13011          6 DTFVLTLSCPSAAGIVAAVTGFLAEHGCYITELHSFDDRLSGRFFMRVEFHSEE-GL------DEDALRAGFAP   72 (286)
T ss_pred             ceEEEEEEeCCCCCHHHHHHHHHHhCCCCEEEeeeeecCCCCeEEEEEEEecCC-CC------CHHHHHHHHHH
Confidence            3568999999999999999999999999999888875332  343334443332 21      14667777766

>cd04886 ACT_ThrD-II-like C-terminal ACT domain of biodegradative (catabolic) threonine dehydratase II (ThrD-II) and other related ACT domains

Probab=97.58  E-value=0.0011  Score=43.33  Aligned_cols=34  Identities=15%  Similarity=0.368  Sum_probs=29.9

Q ss_pred             EEEEeCCcccHHHHHHHHHHHCCceEEEEEEEec
Q 028501           17 VQLSFGDRLGALIDTMNALKDLGLDVAKGTVNTE   50 (208)
Q Consensus        17 v~v~~~DrpGLl~~i~~~L~~~gl~I~~a~i~t~   50 (208)
                      +.|.++|+||+|++++.+|+++|++|.+......
T Consensus         1 ~~v~~~d~~G~L~~i~~~i~~~~~nI~~i~~~~~   34 (73)
T cd04886           1 LRVELPDRPGQLAKLLAVIAEAGANIIEVSHDRA   34 (73)
T ss_pred             CEEEeCCCCChHHHHHHHHHHcCCCEEEEEEEec
Confidence            3578899999999999999999999997776654

This CD includes the C-terminal ACT domain of biodegradative (catabolic) threonine dehydratase II (ThrD-II) and other related ACT domains. The Escherichia coli tdcB gene product, ThrD-II, anaerobically catalyzes the pyridoxal phosphate-dependent dehydration of L-threonine and L-serine to ammonia and to alpha-ketobutyrate and pyruvate, respectively. Tetrameric ThrD-II is subject to allosteric activation by AMP, inhibition by alpha-keto acids, and catabolite inactivation by several metabolites of glycolysis and the citric acid cycle. Also included in this CD are N-terminal ACT domains present in smaller (~170 a.a.) archaeal proteins of unknown function. Members of this CD belong to the superfamily of ACT regulatory domains.

>cd04879 ACT_3PGDH-like ACT_3PGDH-like CD includes the C-terminal ACT (regulatory) domain of D-3-phosphoglycerate dehydrogenase (3PGDH)

Probab=97.57  E-value=0.00075  Score=43.90  Aligned_cols=44  Identities=18%  Similarity=0.357  Sum_probs=37.0

Q ss_pred             EEEEecCcchHHHHHHHHHHhCCccEEEEEEEecC--CeEEEEEEE
Q 028501          132 LYIETADRPGLLVEIMKIIADVNVDVESAEIDTEG--LVAKDKFHV  175 (208)
Q Consensus       132 i~v~~~Dr~GlL~~i~~~l~~~~i~I~~a~i~t~~--~~~~~~f~v  175 (208)
                      +.+.+.|++|+|++|++.|+++|+||.++.+...+  +...-.|.+
T Consensus         2 l~v~~~d~~g~l~~i~~~l~~~~~nI~~~~~~~~~~~~~~~~~~~v   47 (71)
T cd04879           2 LLIVHKDVPGVIGKVGTILGEHGINIAAMQVGRKEKGGIAYMVLDV   47 (71)
T ss_pred             EEEEecCCCCHHHHHHHHHHhcCCCeeeEEEeccCCCCEEEEEEEc
Confidence            57889999999999999999999999999988754  344455666

ACT_3PGDH-like: The ACT_3PGDH-like CD includes the C-terminal ACT (regulatory) domain of D-3-phosphoglycerate dehydrogenase (3PGDH), with or without an extended C-terminal (xct) region found in various bacteria, archaea, fungi, and plants. 3PGDH is an enzyme that belongs to the D-isomer specific, 2-hydroxyacid dehydrogenase family and catalyzes the oxidation of D-3-phosphoglycerate to 3- phosphohydroxypyruvate, which is the first step in the biosynthesis of L-serine, using NAD+ as the oxidizing agent. In bacteria, 3PGDH is feedback controlled by the end product L-serine in an allosteric manner. In the Escherichia coli homotetrameric enzyme, the interface at adjacent ACT (regulatory) domains couples to create an extended beta-sheet. Each regulatory interface forms two serine-binding sites. The mechanism by which serine transmits inhibition to the active

>PRK06737 acetolactate synthase 1 regulatory subunit; Validated

Probab=97.56  E-value=0.00083  Score=45.85  Aligned_cols=46  Identities=13%  Similarity=0.233  Sum_probs=37.7

Q ss_pred             EEEEEEecCcchHHHHHHHHHHhCCccEEEEEEEecCCeEEEEEEE
Q 028501          130 SLLYIETADRPGLLVEIMKIIADVNVDVESAEIDTEGLVAKDKFHV  175 (208)
Q Consensus       130 ~~i~v~~~Dr~GlL~~i~~~l~~~~i~I~~a~i~t~~~~~~~~f~v  175 (208)
                      ..+.+...|+||+|+.|+..|+..|.||.++.+....+.....+.+
T Consensus         3 ~tisi~v~n~pGVL~Ri~~lf~rRgfNI~Sl~vg~te~~~~sriti   48 (76)
T PRK06737          3 HTFSLVIHNDPSVLLRISGIFARRGYYISSLNLNERDTSGVSEMKL   48 (76)
T ss_pred             EEEEEEEecCCCHHHHHHHHHhccCcceEEEEecccCCCCeeEEEE
Confidence            5789999999999999999999999999999988655443333333

>COG0788 PurU Formyltetrahydrofolate hydrolase [Nucleotide transport and metabolism]

Probab=97.55  E-value=0.00026  Score=58.94  Aligned_cols=39  Identities=18%  Similarity=0.252  Sum_probs=36.0

Q ss_pred             CeEEEEEEeCCcccHHHHHHHHHHHCCceEEEEEEEecC
Q 028501           13 DATIVQLSFGDRLGALIDTMNALKDLGLDVAKGTVNTEG   51 (208)
Q Consensus        13 ~~~~v~v~~~DrpGLl~~i~~~L~~~gl~I~~a~i~t~~   51 (208)
                      ....+++.|+|+||+++.|++.|+.+||||.++.-++..
T Consensus         6 ~~~~LtvsCpd~~GiVaais~~l~~~g~NI~~~~qf~D~   44 (287)
T COG0788           6 DTFILTVSCPDQPGIVAAISGFLAEHGCNIVDSDQFDDP   44 (287)
T ss_pred             cceEEEEecCCCCCcHHHHHHHHHHcCCceeeccccccc
Confidence            457999999999999999999999999999999999644

>cd04909 ACT_PDH-BS C-terminal ACT domain of the monofunctional, NAD dependent, prephenate dehydrogenase (PDH)

Probab=97.55  E-value=0.0004  Score=45.91  Aligned_cols=47  Identities=21%  Similarity=0.398  Sum_probs=37.3

Q ss_pred             EEEEEEecCcchHHHHHHHHHHhCCccEEEEEEEecCC--eEEEEEEEE
Q 028501          130 SLLYIETADRPGLLVEIMKIIADVNVDVESAEIDTEGL--VAKDKFHVS  176 (208)
Q Consensus       130 ~~i~v~~~Dr~GlL~~i~~~l~~~~i~I~~a~i~t~~~--~~~~~f~v~  176 (208)
                      +.+.+..+|+||.|+++++.|+++|+||.++.......  .....|.++
T Consensus         2 ~~~~v~~~d~~G~L~~l~~~l~~~~i~i~~~~~~~~~~~~~~~~~i~v~   50 (69)
T cd04909           2 YDLYVDVPDEPGVIAEVTQILGDAGISIKNIEILEIREGIGGILRISFK   50 (69)
T ss_pred             EEEEEEcCCCCCHHHHHHHHHHHcCCCceeeEeEEeecCCcEEEEEEEC
Confidence            56888999999999999999999999999998776532  233345554

The C-terminal ACT domain of the monofunctional, NAD dependent, prephenate dehydrogenase (PDH) enzyme that catalyzes the formation of 4-hydroxyphenylpyruvate from prephenate, found in Bacillus subtilis (BS) and other Firmicutes, Deinococci, and Bacteroidetes. PDH is the first enzyme in the aromatic amino acid pathway specific for the biosynthesis of tyrosine. This enzyme is feedback-inhibited by tyrosine in B. subtilis and other microorganisms. Both phenylalanine and tryptophan have been shown to be inhibitors of this activity in B. subtilis. Bifunctional chorismate mutase-PDH (TyrA) enzymes such as those seen in Escherichia coli do not contain an ACT domain. Members of this CD belong to the superfamily of ACT regulatory domains.

>cd04886 ACT_ThrD-II-like C-terminal ACT domain of biodegradative (catabolic) threonine dehydratase II (ThrD-II) and other related ACT domains

Probab=97.55  E-value=0.00045  Score=45.33  Aligned_cols=34  Identities=29%  Similarity=0.575  Sum_probs=30.2

Q ss_pred             EEEEecCcchHHHHHHHHHHhCCccEEEEEEEec
Q 028501          132 LYIETADRPGLLVEIMKIIADVNVDVESAEIDTE  165 (208)
Q Consensus       132 i~v~~~Dr~GlL~~i~~~l~~~~i~I~~a~i~t~  165 (208)
                      +.|..+|+||.|++|+.+|++.|+||.++.....
T Consensus         1 ~~v~~~d~~G~L~~i~~~i~~~~~nI~~i~~~~~   34 (73)
T cd04886           1 LRVELPDRPGQLAKLLAVIAEAGANIIEVSHDRA   34 (73)
T ss_pred             CEEEeCCCCChHHHHHHHHHHcCCCEEEEEEEec
Confidence            3578899999999999999999999998887654

This CD includes the C-terminal ACT domain of biodegradative (catabolic) threonine dehydratase II (ThrD-II) and other related ACT domains. The Escherichia coli tdcB gene product, ThrD-II, anaerobically catalyzes the pyridoxal phosphate-dependent dehydration of L-threonine and L-serine to ammonia and to alpha-ketobutyrate and pyruvate, respectively. Tetrameric ThrD-II is subject to allosteric activation by AMP, inhibition by alpha-keto acids, and catabolite inactivation by several metabolites of glycolysis and the citric acid cycle. Also included in this CD are N-terminal ACT domains present in smaller (~170 a.a.) archaeal proteins of unknown function. Members of this CD belong to the superfamily of ACT regulatory domains.

>PRK06737 acetolactate synthase 1 regulatory subunit; Validated

Probab=97.55  E-value=0.00064  Score=46.41  Aligned_cols=64  Identities=8%  Similarity=0.077  Sum_probs=45.3

Q ss_pred             EEEEEEeCCcccHHHHHHHHHHHCCceEEEEEEEecCCeeEEEEEEeeCCCCCCCCCHHHHHHHHHHHHH
Q 028501           15 TIVQLSFGDRLGALIDTMNALKDLGLDVAKGTVNTEGSVKQTKFFITRLDTGRKVEDPDLLERIRLTIIN   84 (208)
Q Consensus        15 ~~v~v~~~DrpGLl~~i~~~L~~~gl~I~~a~i~t~~~~~~d~F~v~~~~~g~~~~~~~~~~~l~~~L~~   84 (208)
                      ..+.+...|+||.|++++++|+..|+||.+-.+.-+.+.-+-.+.+.-.  |.    +..++++.+.|.+
T Consensus         3 ~tisi~v~n~pGVL~Ri~~lf~rRgfNI~Sl~vg~te~~~~sriti~~~--~~----~~~i~qi~kQL~K   66 (76)
T PRK06737          3 HTFSLVIHNDPSVLLRISGIFARRGYYISSLNLNERDTSGVSEMKLTAV--CT----ENEATLLVSQLKK   66 (76)
T ss_pred             EEEEEEEecCCCHHHHHHHHHhccCcceEEEEecccCCCCeeEEEEEEE--CC----HHHHHHHHHHHhC
Confidence            3689999999999999999999999999988877554432222333322  22    3556777777665

>cd04931 ACT_PAH ACT domain of the nonheme iron-dependent aromatic amino acid hydroxylase, phenylalanine hydroxylases (PAH)

Probab=97.54  E-value=0.0016  Score=45.97  Aligned_cols=71  Identities=11%  Similarity=0.251  Sum_probs=52.8

Q ss_pred             CeEEEEEEecCcchHHHHHHHHHHhCCccEEEEEEEecCCeEEE-EEEEEeCCCCCChHHHHHHHHHHHHHcCC
Q 028501          128 KRSLLYIETADRPGLLVEIMKIIADVNVDVESAEIDTEGLVAKD-KFHVSYGGAALNSSLSQVLVNCLRYYLRR  200 (208)
Q Consensus       128 ~~~~i~v~~~Dr~GlL~~i~~~l~~~~i~I~~a~i~t~~~~~~~-~f~v~~~g~~~~~~~~~~l~~~l~~~l~~  200 (208)
                      ..+.+-+...|+||-|+++...|+++|+|+.++.........+. .|+|+-+|. . ++..+.+.+.|...|+-
T Consensus        13 ~ktslif~l~~~pGsL~~vL~~Fa~~~INLt~IeSRP~~~~~~~Y~FfVDieg~-~-~~~~~~~l~~L~~~~~~   84 (90)
T cd04931          13 GVISLIFSLKEEVGALAKVLRLFEEKDINLTHIESRPSRLNKDEYEFFINLDKK-S-APALDPIIKSLRNDIGA   84 (90)
T ss_pred             CcEEEEEEcCCCCcHHHHHHHHHHHCCCCEEEEEeccCCCCCceEEEEEEEEcC-C-CHHHHHHHHHHHHHhCC
Confidence            34677777799999999999999999999999999887666544 688876776 2 33334444555655543

ACT domain of the nonheme iron-dependent aromatic amino acid hydroxylase, phenylalanine hydroxylases (PAH). PAH catalyzes the hydroxylation of L-Phe to L-Tyr, the first step in the catabolic degradation of L-Phe. In PAH, an autoregulatory sequence, N-terminal of the ACT domain, extends across the catalytic domain active site and regulates the enzyme by intrasteric regulation. It appears that the activation by L-Phe induces a conformational change that converts the enzyme to a high-affinity and high-activity state. Modulation of activity is achieved through inhibition by BH4 and activation by phosphorylation of serine residues of the autoregulatory region. The molecular basis for the cooperative activation process is not fully understood yet. Members of this CD belong to the superfamily of ACT regulatory domains.

>cd04894 ACT_ACR-like_1 ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein)

Probab=97.52  E-value=0.00055  Score=44.50  Aligned_cols=67  Identities=21%  Similarity=0.267  Sum_probs=52.4

Q ss_pred             EEEEEEecCcchHHHHHHHHHHhCCccEEEEEEEecCCeEEEEEEEEeCCCCCChHHHHHHHHHHHHH
Q 028501          130 SLLYIETADRPGLLVEIMKIIADVNVDVESAEIDTEGLVAKDKFHVSYGGAALNSSLSQVLVNCLRYY  197 (208)
Q Consensus       130 ~~i~v~~~Dr~GlL~~i~~~l~~~~i~I~~a~i~t~~~~~~~~f~v~~~g~~~~~~~~~~l~~~l~~~  197 (208)
                      ++|+|.++|+.||=.||+|++-+.|++|....++|.|.-..-+|.|.....+++- .-..|+.+|..+
T Consensus         1 tvitvnCPDktGLgcdlcr~il~fGl~i~rgd~sTDGkWCyiv~wVv~~~~~~~~-rW~lLK~RL~~~   67 (69)
T cd04894           1 SVITINCPDKTGLGCDLCRIILEFGLNITRGDDSTDGRWCYIVFWVVPRPPSIKV-RWDLLKNRLMSA   67 (69)
T ss_pred             CEEEEeCCCccCcccHHHHHHHHhceEEEecccccCCcEEEEEEEEecCCCCCcc-cHHHHHHHHHhc
Confidence            3689999999999999999999999999999999999988888999753333211 125555555543

This CD includes the N-terminal ACT domain of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) have been described, however, the ACR-like sequences in this CD are distinct from those characterized. This CD includes the Oryza sativa ACR-like protein (Os05g0113000) encoded on chromosome 5 and the Arabidopsis thaliana predicted gene product, At2g39570. Members of this CD belong to the superfamily of ACT regulatory domains.

>cd04902 ACT_3PGDH-xct C-terminal ACT (regulatory) domain of D-3-phosphoglycerate dehydrogenase (3PGDH)

Probab=97.51  E-value=0.00057  Score=45.35  Aligned_cols=57  Identities=18%  Similarity=0.373  Sum_probs=40.3

Q ss_pred             EEEEecCcchHHHHHHHHHHhCCccEEEEEEEec--CCeEEEEEEEEeCCCCCChHHHHHHH
Q 028501          132 LYIETADRPGLLVEIMKIIADVNVDVESAEIDTE--GLVAKDKFHVSYGGAALNSSLSQVLV  191 (208)
Q Consensus       132 i~v~~~Dr~GlL~~i~~~l~~~~i~I~~a~i~t~--~~~~~~~f~v~~~g~~~~~~~~~~l~  191 (208)
                      +-+.+.|+||.+++|++.|+++|+||.+......  ++...-+|.++  + +.+.+..+.|+
T Consensus         2 l~v~~~d~~G~l~~i~~~l~~~~inI~~~~~~~~~~~~~~~~~i~v~--~-~~~~~~~~~l~   60 (73)
T cd04902           2 LVVRNTDRPGVIGKVGTILGEAGINIAGMQVGRDEPGGEALMVLSVD--E-PVPDEVLEELR   60 (73)
T ss_pred             EEEEeCCCCCHHHHHHHHHHHcCcChhheEeeccCCCCEEEEEEEeC--C-CCCHHHHHHHH
Confidence            3568999999999999999999999999987653  34454555553  3 33334444443

The C-terminal ACT (regulatory) domain of D-3-phosphoglycerate dehydrogenase (3PGDH), with an extended C-terminal (xct) region from bacteria, archaea, fungi, and plants. 3PGDH is an enzyme that belongs to the D-isomer specific, 2-hydroxyacid dehydrogenase family and catalyzes the oxidation of D-3-phosphoglycerate to 3- phosphohydroxypyruvate, which is the first step in the biosynthesis of L-serine, using NAD+ as the oxidizing agent. In bacteria, 3PGDH is feedback-controlled by the end product L-serine in an allosteric manner. Some 3PGDH enzymes have an additional domain formed by an extended C-terminal region. This additional domain introduces significant asymmetry to the homotetramer. Adjacent ACT (regulatory) domains interact, creating two serine-binding sites, however, this asymmetric arrangement results in the formation of two different and distinct domain interfaces between iden

>cd04888 ACT_PheB-BS C-terminal ACT domain of a small (~147 a

Probab=97.51  E-value=0.00059  Score=45.77  Aligned_cols=46  Identities=22%  Similarity=0.263  Sum_probs=37.2

Q ss_pred             EEEEEecCcchHHHHHHHHHHhCCccEEEEEEEecC-CeEEEEEEEE
Q 028501          131 LLYIETADRPGLLVEIMKIIADVNVDVESAEIDTEG-LVAKDKFHVS  176 (208)
Q Consensus       131 ~i~v~~~Dr~GlL~~i~~~l~~~~i~I~~a~i~t~~-~~~~~~f~v~  176 (208)
                      .+.+.+.|+||+|++|++.|++.|+||..+...+.. +.+.-.|.+.
T Consensus         2 ~l~i~~~d~~g~l~~I~~~la~~~inI~~i~~~~~~~~~~~i~~~v~   48 (76)
T cd04888           2 TLSLLLEHRPGVLSKVLNTIAQVRGNVLTINQNIPIHGRANVTISID   48 (76)
T ss_pred             EEEEEecCCCchHHHHHHHHHHcCCCEEEEEeCCCCCCeEEEEEEEE
Confidence            578999999999999999999999999999876533 3344456664

a.) putative phenylalanine biosynthetic pathway protein described in Bacillus subtilis (BS) PheB (PheB-BS) and related domains. This CD includes the C-terminal ACT domain of a small (~147 a.a.) putative phenylalanine biosynthetic pathway protein described in Bacillus subtilis (BS) PheB (PheB-BS) and other related ACT domains. In B. subtilis, the upstream gene of pheB, pheA encodes prephenate dehydratase (PDT). The presumed product of the pheB gene is chorismate mutase (CM). The deduced product of the B. subtilis pheB gene, however, has no significant homology to the CM portion of the bifunctional CM-PDT of Escherichia coli. The presence of an ACT domain lends support to the prediction that these proteins function as a phenylalanine-binding regulatory protein. Members of this CD belong to the superfamily of ACT regulatory domains.

>CHL00100 ilvH acetohydroxyacid synthase small subunit

Probab=97.51  E-value=0.00067  Score=53.63  Aligned_cols=37  Identities=22%  Similarity=0.346  Sum_probs=34.0

Q ss_pred             EEEEEEecCcchHHHHHHHHHHhCCccEEEEEEEecC
Q 028501          130 SLLYIETADRPGLLVEIMKIIADVNVDVESAEIDTEG  166 (208)
Q Consensus       130 ~~i~v~~~Dr~GlL~~i~~~l~~~~i~I~~a~i~t~~  166 (208)
                      ..+.+.+.|+||+|++|+.+|+.+|+||.+..+....
T Consensus         3 ~~isvlv~n~PGVL~RIt~lFsrRg~NIesLsv~~t~   39 (174)
T CHL00100          3 HTLSVLVEDESGVLTRIAGLFARRGFNIESLAVGPAE   39 (174)
T ss_pred             EEEEEEEeCcCCHHHHHHHHHHhCCCCeeEEEeeEcC
Confidence            5799999999999999999999999999999997633

>PRK08178 acetolactate synthase 1 regulatory subunit; Reviewed

Probab=97.50  E-value=0.0011  Score=47.17  Aligned_cols=66  Identities=14%  Similarity=0.170  Sum_probs=48.1

Q ss_pred             CCeEEEEEEeCCcccHHHHHHHHHHHCCceEEEEEEEecCCeeEEEEEEeeCCCCCCCCCHHHHHHHHHHHHH
Q 028501           12 SDATIVQLSFGDRLGALIDTMNALKDLGLDVAKGTVNTEGSVKQTKFFITRLDTGRKVEDPDLLERIRLTIIN   84 (208)
Q Consensus        12 ~~~~~v~v~~~DrpGLl~~i~~~L~~~gl~I~~a~i~t~~~~~~d~F~v~~~~~g~~~~~~~~~~~l~~~L~~   84 (208)
                      .+...+.+...|+||.|++|++.|+..|+||.+-.+.-+.+.-+-.+.+.-.+       ++.++++.+.|++
T Consensus         6 ~~~~tisvlv~N~pGVL~RIaglFsRRgyNIeSLtvg~te~~~iSRmtivv~~-------~~~i~Qi~kQL~K   71 (96)
T PRK08178          6 HDNVILELTVRNHPGVMSHVCGLFARRAFNVEGILCLPIQDGDKSRIWLLVND-------DQRLEQMISQIEK   71 (96)
T ss_pred             CCCEEEEEEEECCcCHHHHHHHHHhcCCcCeeeEEEeecCCCCceEEEEEEcC-------chHHHHHHHHHhC
Confidence            45567999999999999999999999999999888876665433233333221       1456777777665

>cd04877 ACT_TyrR N-terminal ACT domain of the TyrR protein

Probab=97.50  E-value=0.00051  Score=46.33  Aligned_cols=35  Identities=31%  Similarity=0.568  Sum_probs=32.6

Q ss_pred             EEEEEecCcchHHHHHHHHHHhCCccEEEEEEEec
Q 028501          131 LLYIETADRPGLLVEIMKIIADVNVDVESAEIDTE  165 (208)
Q Consensus       131 ~i~v~~~Dr~GlL~~i~~~l~~~~i~I~~a~i~t~  165 (208)
                      .++|.+.||+|+|++|+.+|++.|+||.++.+.+.
T Consensus         2 ~l~I~~~dr~Gll~dI~~~i~~~~~nI~~~~~~~~   36 (74)
T cd04877           2 RLEITCEDRLGITQEVLDLLVEHNIDLRGIEIDPK   36 (74)
T ss_pred             EEEEEEEccchHHHHHHHHHHHCCCceEEEEEecC
Confidence            47899999999999999999999999999999764

ACT_TyrR: N-terminal ACT domain of the TyrR protein. The TyrR protein of Escherichia coli controls the expression of a group of transcription units (TyrR regulon) whose gene products are involved in the biosynthesis or transport of the aromatic amino acids. Binding to specific DNA sequences known as TyrR boxes, the TyrR protein can either activate or repress transcription at different sigma70 promoters. Its regulatory activity occurs in response to intracellular levels of tyrosine, phenylalanine and tryptophan. The TyrR protein consists of an N-terminal region important for transcription activation with an ATP-independent aromatic amino acid binding site (contained within the ACT domain) and is involved in dimerization; a central region with an ATP binding site, an ATP-dependent aromatic amino acid binding site and is involved in hexamerization; and a helix turn helix DNA binding C-terminal region. In solution, in the absence

>PRK13562 acetolactate synthase 1 regulatory subunit; Provisional

Probab=97.47  E-value=0.00084  Score=46.56  Aligned_cols=64  Identities=16%  Similarity=0.121  Sum_probs=47.2

Q ss_pred             EEEEEeCCcccHHHHHHHHHHHCCceEEEEEEEecCCeeEEEEEEeeCCCCCCCCCHHHHHHHHHHHHH
Q 028501           16 IVQLSFGDRLGALIDTMNALKDLGLDVAKGTVNTEGSVKQTKFFITRLDTGRKVEDPDLLERIRLTIIN   84 (208)
Q Consensus        16 ~v~v~~~DrpGLl~~i~~~L~~~gl~I~~a~i~t~~~~~~d~F~v~~~~~g~~~~~~~~~~~l~~~L~~   84 (208)
                      .+.+...|+||.|+++++.|+..|+||.+-.+..+.+.-+-.+.+.-.. |    ++..++++.+.|.+
T Consensus         4 ~isvlVeN~~GVL~Rit~lFsRRg~NI~SLtvg~Te~~~iSRmtivv~~-~----d~~~ieqI~kQL~K   67 (84)
T PRK13562          4 ILKLQVADQVSTLNRITSAFVRLQYNIDTLHVTHSEQPGISNMEIQVDI-Q----DDTSLHILIKKLKQ   67 (84)
T ss_pred             EEEEEEECCCCHHHHHHHHHhccCcCeeeEEecccCCCCceEEEEEEeC-C----CHHHHHHHHHHHhC
Confidence            6889999999999999999999999999888877766433334443321 2    23556777777665

>TIGR00119 acolac_sm acetolactate synthase, small subunit

Probab=97.45  E-value=0.0012  Score=51.34  Aligned_cols=63  Identities=14%  Similarity=0.246  Sum_probs=46.0

Q ss_pred             EEEEEEecCcchHHHHHHHHHHhCCccEEEEEEEecCCeEE--EEEEEEeCCCCCChHHHHHHHHHHHHH
Q 028501          130 SLLYIETADRPGLLVEIMKIIADVNVDVESAEIDTEGLVAK--DKFHVSYGGAALNSSLSQVLVNCLRYY  197 (208)
Q Consensus       130 ~~i~v~~~Dr~GlL~~i~~~l~~~~i~I~~a~i~t~~~~~~--~~f~v~~~g~~~~~~~~~~l~~~l~~~  197 (208)
                      ..+.+...|+||.|++|+..|+++|+||.+..+...++...  -.|.+.  |   ++...++|.+.|...
T Consensus         2 ~~isI~ven~pGvL~rI~~lf~rrg~NI~Sl~v~~t~~~~~sriti~V~--~---d~~~i~qi~kQl~Kl   66 (157)
T TIGR00119         2 HILSVLVENEPGVLSRVAGLFTRRGFNIESLTVGPTEDPDLSRMTIVVV--G---DDKVLEQITKQLNKL   66 (157)
T ss_pred             EEEEEEEcCCCcHHHHHHHHHHhCCceEEEEEEeecCCCCEEEEEEEEE--C---CHHHHHHHHHHHhcC
Confidence            46889999999999999999999999999999887653323  334443  3   244456666665543

acetohydroxyacid synthase is a synonym.

>PRK08178 acetolactate synthase 1 regulatory subunit; Reviewed

Probab=97.43  E-value=0.0015  Score=46.38  Aligned_cols=65  Identities=11%  Similarity=0.152  Sum_probs=46.7

Q ss_pred             CeEEEEEEecCcchHHHHHHHHHHhCCccEEEEEEEecCCeEEEEEEEEeCCCCCChHHHHHHHHHHHH
Q 028501          128 KRSLLYIETADRPGLLVEIMKIIADVNVDVESAEIDTEGLVAKDKFHVSYGGAALNSSLSQVLVNCLRY  196 (208)
Q Consensus       128 ~~~~i~v~~~Dr~GlL~~i~~~l~~~~i~I~~a~i~t~~~~~~~~f~v~~~g~~~~~~~~~~l~~~l~~  196 (208)
                      ....+.+...|+||+|+.|+..|+..|.||.++.+...+......+.+.-.+    +...+++...|..
T Consensus         7 ~~~tisvlv~N~pGVL~RIaglFsRRgyNIeSLtvg~te~~~iSRmtivv~~----~~~i~Qi~kQL~K   71 (96)
T PRK08178          7 DNVILELTVRNHPGVMSHVCGLFARRAFNVEGILCLPIQDGDKSRIWLLVND----DQRLEQMISQIEK   71 (96)
T ss_pred             CCEEEEEEEECCcCHHHHHHHHHhcCCcCeeeEEEeecCCCCceEEEEEEcC----chHHHHHHHHHhC
Confidence            3577999999999999999999999999999999987665543333332222    2344555555543

>cd04878 ACT_AHAS N-terminal ACT domain of the Escherichia coli IlvH-like regulatory subunit of acetohydroxyacid synthase (AHAS)

Probab=97.42  E-value=0.0023  Score=41.71  Aligned_cols=60  Identities=18%  Similarity=0.257  Sum_probs=42.6

Q ss_pred             EEEEEecCcchHHHHHHHHHHhCCccEEEEEEEec-CCe-EEEEEEEEeCCCCCChHHHHHHHHHHH
Q 028501          131 LLYIETADRPGLLVEIMKIIADVNVDVESAEIDTE-GLV-AKDKFHVSYGGAALNSSLSQVLVNCLR  195 (208)
Q Consensus       131 ~i~v~~~Dr~GlL~~i~~~l~~~~i~I~~a~i~t~-~~~-~~~~f~v~~~g~~~~~~~~~~l~~~l~  195 (208)
                      .+.+.+.|+||+|.+|+..|+++|++|.++...+. ++. +.-.|.+...    + +..+.+.+.|.
T Consensus         2 ~l~i~~~d~~g~l~~i~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~----~-~~~~~l~~~l~   63 (72)
T cd04878           2 TLSVLVENEPGVLNRISGLFARRGFNIESLTVGPTEDPGISRITIVVEGD----D-DVIEQIVKQLN   63 (72)
T ss_pred             EEEEEEcCCCcHHHHHHHHHHhCCCCEEEEEeeecCCCCeEEEEEEEECC----H-HHHHHHHHHHh
Confidence            46788999999999999999999999999998765 333 3334444321    2 33455555554

ACT_AHAS: N-terminal ACT domain of the Escherichia coli IlvH-like regulatory subunit of acetohydroxyacid synthase (AHAS). AHAS catalyses the first common step in the biosynthesis of the three branched-chain amino acids. The first step involves the condensation of either pyruvate or 2-ketobutyrate with the two-carbon hydroxyethyl fragment derived from another pyruvate molecule, covalently bound to the coenzyme thiamine diphosphate. Bacterial AHASs generally consist of regulatory and catalytic subunits. The effector (valine) binding sites are proposed to be located in two symmetrically related positions in the interface between a pair of N-terminal ACT domains with the C-terminal domain of IlvH contacting the catalytic dimer. Plants Arabidopsis and Oryza have tandem IlvH subunits; both the first and second ACT domain sequences are present in this CD. Members of

>PRK13562 acetolactate synthase 1 regulatory subunit; Provisional

Probab=97.41  E-value=0.0013  Score=45.63  Aligned_cols=64  Identities=11%  Similarity=0.209  Sum_probs=46.4

Q ss_pred             EEEEEEecCcchHHHHHHHHHHhCCccEEEEEEEecCCeEEEEEEEEe-CCCCCChHHHHHHHHHHHH
Q 028501          130 SLLYIETADRPGLLVEIMKIIADVNVDVESAEIDTEGLVAKDKFHVSY-GGAALNSSLSQVLVNCLRY  196 (208)
Q Consensus       130 ~~i~v~~~Dr~GlL~~i~~~l~~~~i~I~~a~i~t~~~~~~~~f~v~~-~g~~~~~~~~~~l~~~l~~  196 (208)
                      ..+.+...|+||+|+.|+..|+..|+||.+..+....+.....+.+.- .|.   +...+++.+.|..
T Consensus         3 ~~isvlVeN~~GVL~Rit~lFsRRg~NI~SLtvg~Te~~~iSRmtivv~~~d---~~~ieqI~kQL~K   67 (84)
T PRK13562          3 RILKLQVADQVSTLNRITSAFVRLQYNIDTLHVTHSEQPGISNMEIQVDIQD---DTSLHILIKKLKQ   67 (84)
T ss_pred             EEEEEEEECCCCHHHHHHHHHhccCcCeeeEEecccCCCCceEEEEEEeCCC---HHHHHHHHHHHhC
Confidence            468899999999999999999999999999999876655444444432 232   2334555555543

>cd04889 ACT_PDH-BS-like C-terminal ACT domain of the monofunctional, NAD dependent, prephenate dehydrogenase (PDH) enzyme that catalyzes the formation of 4-hydroxyphenylpyruvate from prephenate

Probab=97.40  E-value=0.00085  Score=42.49  Aligned_cols=45  Identities=9%  Similarity=0.269  Sum_probs=36.9

Q ss_pred             EEEEeCCcccHHHHHHHHHHHCCceEEEEEEEecC-CeeEEEEEEe
Q 028501           17 VQLSFGDRLGALIDTMNALKDLGLDVAKGTVNTEG-SVKQTKFFIT   61 (208)
Q Consensus        17 v~v~~~DrpGLl~~i~~~L~~~gl~I~~a~i~t~~-~~~~d~F~v~   61 (208)
                      +.+..+|+||.+++++..|.+.|+||.+..++..+ +..+-.|.+.
T Consensus         1 ~~v~~~d~~G~l~~i~~~l~~~~inI~~~~~~~~~~~~~~~~~~v~   46 (56)
T cd04889           1 LSVFVENKPGRLAEVTEILAEAGINIKAISIAETRGEFGILRLIFS   46 (56)
T ss_pred             CEEEeCCCCChHHHHHHHHHHcCCCEeeEEEEEccCCcEEEEEEEC
Confidence            45788999999999999999999999999988876 4455445553

Included in this CD is the C-terminal ACT domain of the monofunctional, NAD dependent, prephenate dehydrogenase (PDH) enzyme that catalyzes the formation of 4-hydroxyphenylpyruvate from prephenate, found in Bacillus subtilis (BS) and other Firmicutes, Deinococci, and Bacteroidetes. PDH is the first enzyme in the aromatic amino acid pathway specific for the biosynthesis of tyrosine. This enzyme is feedback inhibited by tyrosine in B. subtilis and other microorganisms. Both phenylalanine and tryptophan have been shown to be inhibitors of this activity in B. subtilis. Bifunctional chorismate mutase-PDH (TyrA) enzymes such as those seen in Escherichia coli do not contain an ACT domain. Also included in this CD is the N-terminal ACT domain of a novel protein composed almost entirely of two tandem A

>cd04881 ACT_HSDH-Hom ACT_HSDH_Hom CD includes the C-terminal ACT domain of the NAD(P)H-dependent, homoserine dehydrogenase (HSDH) and related domains

Probab=97.38  E-value=0.0019  Score=42.98  Aligned_cols=36  Identities=28%  Similarity=0.504  Sum_probs=32.2

Q ss_pred             EEEEEecCcchHHHHHHHHHHhCCccEEEEEEEecC
Q 028501          131 LLYIETADRPGLLVEIMKIIADVNVDVESAEIDTEG  166 (208)
Q Consensus       131 ~i~v~~~Dr~GlL~~i~~~l~~~~i~I~~a~i~t~~  166 (208)
                      .+.+.+.|+||+|.+|++.|+++|++|.++...+..
T Consensus         2 yl~i~~~d~~g~l~~i~~~l~~~~i~I~~~~~~~~~   37 (79)
T cd04881           2 YLRLTVKDKPGVLAKITGILAEHGISIESVIQKEAD   37 (79)
T ss_pred             EEEEEeCCCCcHHHHHHHHHHHcCCCeEEEEEcccC
Confidence            478899999999999999999999999999876543

The ACT_HSDH_Hom CD includes the C-terminal ACT domain of the NAD(P)H-dependent, homoserine dehydrogenase (HSDH) encoded by the hom gene of Bacillus subtilis and other related sequences. HSDH reduces aspartate semi-aldehyde to the amino acid homoserine, one that is required for the biosynthesis of Met, Thr, and Ile from Asp. Neither the enzyme nor the aspartate pathway is found in the animal kingdom. This mostly bacterial HSDH group has a C-terminal ACT domain and is believed to be involved in enzyme regulation. A C-terminal deletion in the Corynebacterium glutamicum HSDH abolished allosteric inhibition by L-threonine. Members of this CD belong to the superfamily of ACT regulatory domains.

>cd04908 ACT_Bt0572_1 N-terminal ACT domain of a novel protein composed almost entirely of two tandem ACT domains

Probab=97.38  E-value=0.0019  Score=42.39  Aligned_cols=45  Identities=9%  Similarity=0.217  Sum_probs=37.5

Q ss_pred             EEEEEEeCCcccHHHHHHHHHHHCCceEEEEEEEecCCeeEEEEEEe
Q 028501           15 TIVQLSFGDRLGALIDTMNALKDLGLDVAKGTVNTEGSVKQTKFFIT   61 (208)
Q Consensus        15 ~~v~v~~~DrpGLl~~i~~~L~~~gl~I~~a~i~t~~~~~~d~F~v~   61 (208)
                      ..++|..+|+||.|++++.+|.+.|+||.+..++..++.  .++.+.
T Consensus         2 ~ri~v~v~d~pG~La~v~~~l~~~~inI~~i~~~~~~~~--~~~rl~   46 (66)
T cd04908           2 KQLSVFLENKPGRLAAVTEILSEAGINIRALSIADTSEF--GILRLI   46 (66)
T ss_pred             EEEEEEEcCCCChHHHHHHHHHHCCCCEEEEEEEecCCC--CEEEEE
Confidence            367889999999999999999999999999988777664  335554

Included in this CD is the N-terminal ACT domain of a novel protein composed almost entirely of two tandem ACT domains as seen in the uncharacterized structure (pdb 2F06) of the Bt0572 protein from Bacteroides thetaiotaomicron and related ACT domains. These tandem ACT domain proteins belong to the superfamily of ACT regulatory domains.

>cd04877 ACT_TyrR N-terminal ACT domain of the TyrR protein

Probab=97.36  E-value=0.0016  Score=43.90  Aligned_cols=35  Identities=17%  Similarity=0.377  Sum_probs=32.5

Q ss_pred             EEEEEeCCcccHHHHHHHHHHHCCceEEEEEEEec
Q 028501           16 IVQLSFGDRLGALIDTMNALKDLGLDVAKGTVNTE   50 (208)
Q Consensus        16 ~v~v~~~DrpGLl~~i~~~L~~~gl~I~~a~i~t~   50 (208)
                      .|.|.+.||+|+|++|+.++++.|+||....+.+.
T Consensus         2 ~l~I~~~dr~Gll~dI~~~i~~~~~nI~~~~~~~~   36 (74)
T cd04877           2 RLEITCEDRLGITQEVLDLLVEHNIDLRGIEIDPK   36 (74)
T ss_pred             EEEEEEEccchHHHHHHHHHHHCCCceEEEEEecC
Confidence            47899999999999999999999999999998775

ACT_TyrR: N-terminal ACT domain of the TyrR protein. The TyrR protein of Escherichia coli controls the expression of a group of transcription units (TyrR regulon) whose gene products are involved in the biosynthesis or transport of the aromatic amino acids. Binding to specific DNA sequences known as TyrR boxes, the TyrR protein can either activate or repress transcription at different sigma70 promoters. Its regulatory activity occurs in response to intracellular levels of tyrosine, phenylalanine and tryptophan. The TyrR protein consists of an N-terminal region important for transcription activation with an ATP-independent aromatic amino acid binding site (contained within the ACT domain) and is involved in dimerization; a central region with an ATP binding site, an ATP-dependent aromatic amino acid binding site and is involved in hexamerization; and a helix turn helix DNA binding C-terminal region. In solution, in the absence

>cd04903 ACT_LSD C-terminal ACT domain of the L-serine dehydratase (LSD), iron-sulfur-dependent, beta subunit

Probab=97.35  E-value=0.0021  Score=41.82  Aligned_cols=33  Identities=18%  Similarity=0.521  Sum_probs=30.5

Q ss_pred             EEEEecCcchHHHHHHHHHHhCCccEEEEEEEe
Q 028501          132 LYIETADRPGLLVEIMKIIADVNVDVESAEIDT  164 (208)
Q Consensus       132 i~v~~~Dr~GlL~~i~~~l~~~~i~I~~a~i~t  164 (208)
                      +.+.+.|+||.|++|++.|+++|++|.++....
T Consensus         2 l~i~~~d~~g~l~~i~~~l~~~~~~I~~~~~~~   34 (71)
T cd04903           2 LIVVHKDKPGAIAKVTSVLADHEINIAFMRVSR   34 (71)
T ss_pred             EEEEeCCCCChHHHHHHHHHHcCcCeeeeEEEe
Confidence            577899999999999999999999999998765

The C-terminal ACT domain of the L-serine dehydratase (LSD), iron-sulfur-dependent, beta subunit, found in various bacterial anaerobes such as Clostridium, Bacillis, and Treponema species. These enzymes catalyze the deamination of L-serine, producing pyruvate and ammonia. Unlike the eukaryotic L-serine dehydratase, which requires the pyridoxal-5'-phosphate (PLP) cofactor, the prokaryotic L-serine dehydratase contains an [4Fe-4S] cluster instead of a PLP active site. The LSD alpha and beta subunits of the 'clostridial' enzyme are encoded by the sdhA and sdhB genes. The single subunit bacterial homologs of L-serine dehydratase (LSD1, LSD2, TdcG) present in Escherichia coli, and other enterobacterials, lack the ACT domain described here. Members of this CD belong to the superfamily of ACT regulatory domains.

>cd04874 ACT_Af1403 N-terminal ACT domain of the yet uncharacterized, small (~133 a

Probab=97.35  E-value=0.0019  Score=42.23  Aligned_cols=36  Identities=25%  Similarity=0.376  Sum_probs=32.2

Q ss_pred             EEEEEecCcchHHHHHHHHHHhCCccEEEEEEEecC
Q 028501          131 LLYIETADRPGLLVEIMKIIADVNVDVESAEIDTEG  166 (208)
Q Consensus       131 ~i~v~~~Dr~GlL~~i~~~l~~~~i~I~~a~i~t~~  166 (208)
                      .+.+.+.|+||.|+++++.|++++++|.++...+.+
T Consensus         2 ~l~i~~~d~~g~l~~i~~~l~~~~~~i~~~~~~~~~   37 (72)
T cd04874           2 ALSIIAEDKPGVLRDLTGVIAEHGGNITYTQQFIER   37 (72)
T ss_pred             eEEEEeCCCCChHHHHHHHHHhCCCCEEEEEEeccC
Confidence            477899999999999999999999999998877653

a.), putative amino acid binding protein, Af1403, and related domains. This CD includes the N-terminal ACT domain of the yet uncharacterized, small (~133 a.a.), putative amino acid binding protein, Af1403, from Archaeoglobus fulgidus and other related archeal ACT domains. Members of this CD belong to the superfamily of ACT regulatory domains.

>cd04888 ACT_PheB-BS C-terminal ACT domain of a small (~147 a

Probab=97.32  E-value=0.0029  Score=42.27  Aligned_cols=62  Identities=13%  Similarity=0.108  Sum_probs=43.7

Q ss_pred             EEEEEeCCcccHHHHHHHHHHHCCceEEEEEEEecCC-eeEEEEEEeeCCCCCCCCCHH-HHHHHHHHHHH
Q 028501           16 IVQLSFGDRLGALIDTMNALKDLGLDVAKGTVNTEGS-VKQTKFFITRLDTGRKVEDPD-LLERIRLTIIN   84 (208)
Q Consensus        16 ~v~v~~~DrpGLl~~i~~~L~~~gl~I~~a~i~t~~~-~~~d~F~v~~~~~g~~~~~~~-~~~~l~~~L~~   84 (208)
                      .+.+.++|+||++++|+++|+++|++|......+..+ .+.-.|.+...+       .+ .++++.+.|++
T Consensus         2 ~l~i~~~d~~g~l~~I~~~la~~~inI~~i~~~~~~~~~~~i~~~v~v~~-------~~~~l~~l~~~L~~   65 (76)
T cd04888           2 TLSLLLEHRPGVLSKVLNTIAQVRGNVLTINQNIPIHGRANVTISIDTST-------MNGDIDELLEELRE   65 (76)
T ss_pred             EEEEEecCCCchHHHHHHHHHHcCCCEEEEEeCCCCCCeEEEEEEEEcCc-------hHHHHHHHHHHHhc
Confidence            5789999999999999999999999999877654433 333345554331       12 55666666554

a.) putative phenylalanine biosynthetic pathway protein described in Bacillus subtilis (BS) PheB (PheB-BS) and related domains. This CD includes the C-terminal ACT domain of a small (~147 a.a.) putative phenylalanine biosynthetic pathway protein described in Bacillus subtilis (BS) PheB (PheB-BS) and other related ACT domains. In B. subtilis, the upstream gene of pheB, pheA encodes prephenate dehydratase (PDT). The presumed product of the pheB gene is chorismate mutase (CM). The deduced product of the B. subtilis pheB gene, however, has no significant homology to the CM portion of the bifunctional CM-PDT of Escherichia coli. The presence of an ACT domain lends support to the prediction that these proteins function as a phenylalanine-binding regulatory protein. Members of this CD belong to the superfamily of ACT regulatory domains.

>cd04901 ACT_3PGDH C-terminal ACT (regulatory) domain of D-3-Phosphoglycerate Dehydrogenase (3PGDH) found in fungi and bacteria

Probab=97.31  E-value=0.00033  Score=46.10  Aligned_cols=44  Identities=20%  Similarity=0.379  Sum_probs=34.6

Q ss_pred             EEEEecCcchHHHHHHHHHHhCCccEEEEEEEecCCeEEEEEEE
Q 028501          132 LYIETADRPGLLVEIMKIIADVNVDVESAEIDTEGLVAKDKFHV  175 (208)
Q Consensus       132 i~v~~~Dr~GlL~~i~~~l~~~~i~I~~a~i~t~~~~~~~~f~v  175 (208)
                      +-+.+.|+||+|++|+..|++.|+||.++...+.++.+.-.|.+
T Consensus         2 ~~~~~~d~~g~l~~i~~~l~~~~~nI~~~~~~~~~~~a~~~~~~   45 (69)
T cd04901           2 ILHIHKNVPGVLGQINTILAEHNINIAAQYLQTRGEIGYVVIDI   45 (69)
T ss_pred             EEEEecCCCcHHHHHHHHHHHcCCCHHHHhccCCCCEEEEEEEc
Confidence            45689999999999999999999999988766544444444544

The C-terminal ACT (regulatory) domain of D-3-Phosphoglycerate Dehydrogenase (3PGDH) found in fungi and bacteria. 3PGDH is an enzyme that belongs to the D-isomer specific, 2-hydroxyacid dehydrogenase family and catalyzes the oxidation of D-3-phosphoglycerate to 3- phosphohydroxypyruvate, which is the first step in the biosynthesis of L-serine, using NAD+ as the oxidizing agent. In Escherichia coli, the SerA 3PGDH is feedback-controlled by the end product L-serine in an allosteric manner. In the homotetrameric enzyme, the interface at adjacent ACT (regulatory) domains couples to create an extended beta-sheet. Each regulatory interface forms two serine-binding sites. The mechanism by which serine transmits inhibition to the active site is postulated to involve the tethering of the regulatory domains together to create a rigid quaternary structure with a solvent-

>CHL00100 ilvH acetohydroxyacid synthase small subunit

Probab=97.30  E-value=0.0019  Score=51.06  Aligned_cols=66  Identities=11%  Similarity=0.174  Sum_probs=47.7

Q ss_pred             EEEEEEeCCcccHHHHHHHHHHHCCceEEEEEEEecCCeeEEEEEEeeCCCCCCCCCHHHHHHHHHHHHHhh
Q 028501           15 TIVQLSFGDRLGALIDTMNALKDLGLDVAKGTVNTEGSVKQTKFFITRLDTGRKVEDPDLLERIRLTIINNL   86 (208)
Q Consensus        15 ~~v~v~~~DrpGLl~~i~~~L~~~gl~I~~a~i~t~~~~~~d~F~v~~~~~g~~~~~~~~~~~l~~~L~~~l   86 (208)
                      ..+.+.+.|+||+|+++++.|+..|+||.+-.+....+.-.-.+.+.-+  +.    +..+++|.+.|.+..
T Consensus         3 ~~isvlv~n~PGVL~RIt~lFsrRg~NIesLsv~~t~~~~~sr~TIvv~--~~----~~~ieqL~kQL~KLi   68 (174)
T CHL00100          3 HTLSVLVEDESGVLTRIAGLFARRGFNIESLAVGPAEQKGISRITMVVP--GD----DRTIEQLTKQLYKLV   68 (174)
T ss_pred             EEEEEEEeCcCCHHHHHHHHHHhCCCCeeEEEeeEcCCCCccEEEEEEE--CC----HHHHHHHHHHHHHHh
Confidence            3689999999999999999999999999988886644432223444333  22    134678888887744

>cd04909 ACT_PDH-BS C-terminal ACT domain of the monofunctional, NAD dependent, prephenate dehydrogenase (PDH)

Probab=97.29  E-value=0.0039  Score=41.05  Aligned_cols=36  Identities=14%  Similarity=0.198  Sum_probs=32.4

Q ss_pred             EEEEEEeCCcccHHHHHHHHHHHCCceEEEEEEEec
Q 028501           15 TIVQLSFGDRLGALIDTMNALKDLGLDVAKGTVNTE   50 (208)
Q Consensus        15 ~~v~v~~~DrpGLl~~i~~~L~~~gl~I~~a~i~t~   50 (208)
                      ..+.+..+|+||.|+++++.|+++|++|.+......
T Consensus         2 ~~~~v~~~d~~G~L~~l~~~l~~~~i~i~~~~~~~~   37 (69)
T cd04909           2 YDLYVDVPDEPGVIAEVTQILGDAGISIKNIEILEI   37 (69)
T ss_pred             EEEEEEcCCCCCHHHHHHHHHHHcCCCceeeEeEEe
Confidence            467889999999999999999999999998877665

The C-terminal ACT domain of the monofunctional, NAD dependent, prephenate dehydrogenase (PDH) enzyme that catalyzes the formation of 4-hydroxyphenylpyruvate from prephenate, found in Bacillus subtilis (BS) and other Firmicutes, Deinococci, and Bacteroidetes. PDH is the first enzyme in the aromatic amino acid pathway specific for the biosynthesis of tyrosine. This enzyme is feedback-inhibited by tyrosine in B. subtilis and other microorganisms. Both phenylalanine and tryptophan have been shown to be inhibitors of this activity in B. subtilis. Bifunctional chorismate mutase-PDH (TyrA) enzymes such as those seen in Escherichia coli do not contain an ACT domain. Members of this CD belong to the superfamily of ACT regulatory domains.

>cd04882 ACT_Bt0572_2 C-terminal ACT domain of a novel protein composed of just two ACT domains

Probab=97.29  E-value=0.0012  Score=42.77  Aligned_cols=35  Identities=31%  Similarity=0.505  Sum_probs=30.8

Q ss_pred             EEEEecCcchHHHHHHHHHHhCCccEEEEEEEecC
Q 028501          132 LYIETADRPGLLVEIMKIIADVNVDVESAEIDTEG  166 (208)
Q Consensus       132 i~v~~~Dr~GlL~~i~~~l~~~~i~I~~a~i~t~~  166 (208)
                      +.+.-+|+||-|++++..|+++|+||.++......
T Consensus         2 i~v~~~d~pG~L~~i~~~l~~~~~nI~~i~~~~~~   36 (65)
T cd04882           2 LAVEVPDKPGGLHEILQILSEEGINIEYMYAFVEK   36 (65)
T ss_pred             EEEEeCCCCcHHHHHHHHHHHCCCChhheEEEccC
Confidence            67788999999999999999999999988875543

Included in this CD is the C-terminal ACT domain of a novel protein composed of just two ACT domains, as seen in the yet uncharacterized structure (pdb 2F06) of the Bt0572 protein from Bacteroides thetaiotaomicron and related proteins. Members of this CD belong to the superfamily of ACT regulatory domains.

>PRK11895 ilvH acetolactate synthase 3 regulatory subunit; Reviewed

Probab=97.29  E-value=0.0026  Score=49.69  Aligned_cols=61  Identities=15%  Similarity=0.272  Sum_probs=43.9

Q ss_pred             EEEEEEecCcchHHHHHHHHHHhCCccEEEEEEEecCCe--EEEEEEEEeCCCCCChHHHHHHHHHHH
Q 028501          130 SLLYIETADRPGLLVEIMKIIADVNVDVESAEIDTEGLV--AKDKFHVSYGGAALNSSLSQVLVNCLR  195 (208)
Q Consensus       130 ~~i~v~~~Dr~GlL~~i~~~l~~~~i~I~~a~i~t~~~~--~~~~f~v~~~g~~~~~~~~~~l~~~l~  195 (208)
                      ..+++...|+||.|++|+..|+.+|+||.+..+....+.  ..-.|.++  |   ++...+++...|.
T Consensus         3 ~~IsV~veN~pGvL~rI~~lf~rrg~NI~Sl~v~~te~~~~sriti~V~--~---~~~~i~qi~kQl~   65 (161)
T PRK11895          3 HTLSVLVENEPGVLSRVAGLFSRRGYNIESLTVGPTEDPGLSRMTIVTS--G---DEQVIEQITKQLN   65 (161)
T ss_pred             EEEEEEEcCCCcHHHHHHHHHHhCCCcEEEEEeeecCCCCEEEEEEEEE--C---CHHHHHHHHHHHh
Confidence            578999999999999999999999999999998765533  33344443  2   2333455555544

>PRK11152 ilvM acetolactate synthase 2 regulatory subunit; Provisional

Probab=97.22  E-value=0.0033  Score=42.89  Aligned_cols=39  Identities=18%  Similarity=0.275  Sum_probs=35.2

Q ss_pred             EEEEEEecCcchHHHHHHHHHHhCCccEEEEEEEecCCe
Q 028501          130 SLLYIETADRPGLLVEIMKIIADVNVDVESAEIDTEGLV  168 (208)
Q Consensus       130 ~~i~v~~~Dr~GlL~~i~~~l~~~~i~I~~a~i~t~~~~  168 (208)
                      +.+++...|+||.|+.|+..|+..|.||.++.+....+.
T Consensus         4 ~~lsi~v~n~pGVL~Ri~~lf~rRGfnI~sl~v~~t~~~   42 (76)
T PRK11152          4 HQLTIKARFRPEVLERVLRVVRHRGFQVCSMNMTQNTDA   42 (76)
T ss_pred             EEEEEEEECCccHHHHHHHHHhcCCeeeeeEEeeecCCC
Confidence            578999999999999999999999999999999875433

>COG0788 PurU Formyltetrahydrofolate hydrolase [Nucleotide transport and metabolism]

Probab=97.22  E-value=0.002  Score=53.82  Aligned_cols=47  Identities=15%  Similarity=0.328  Sum_probs=38.6

Q ss_pred             CeEEEEEEecCcchHHHHHHHHHHhCCccEEEEEEEecCCeEEEEEEEE
Q 028501          128 KRSLLYIETADRPGLLVEIMKIIADVNVDVESAEIDTEGLVAKDKFHVS  176 (208)
Q Consensus       128 ~~~~i~v~~~Dr~GlL~~i~~~l~~~~i~I~~a~i~t~~~~~~~~f~v~  176 (208)
                      ..+++.++|+|+||+++.|+..|.++|+||....-.+  +.....|+.+
T Consensus         6 ~~~~LtvsCpd~~GiVaais~~l~~~g~NI~~~~qf~--D~~~g~FFmR   52 (287)
T COG0788           6 DTFILTVSCPDQPGIVAAISGFLAEHGCNIVDSDQFD--DPETGRFFMR   52 (287)
T ss_pred             cceEEEEecCCCCCcHHHHHHHHHHcCCceeeccccc--ccccCeEEEE
Confidence            3589999999999999999999999999999988774  3334445554

>COG2716 GcvR Glycine cleavage system regulatory protein [Amino acid transport and metabolism]

Probab=97.22  E-value=0.00023  Score=55.56  Aligned_cols=50  Identities=18%  Similarity=0.204  Sum_probs=46.7

Q ss_pred             CeEEEEEEecCcchHHHHHHHHHHhCCccEEEEEEEecCCeEEEEEEEEe
Q 028501          128 KRSLLYIETADRPGLLVEIMKIIADVNVDVESAEIDTEGLVAKDKFHVSY  177 (208)
Q Consensus       128 ~~~~i~v~~~Dr~GlL~~i~~~l~~~~i~I~~a~i~t~~~~~~~~f~v~~  177 (208)
                      ++.+|++.|.||||++..|+|...++|||+...|++..|+...-+..++.
T Consensus         4 ~~LvItavg~d~pgl~~~lar~v~s~Gcn~leSRla~~g~~~a~i~lisg   53 (176)
T COG2716           4 HYLVITAVGADRPGLVNTLARAVASSGCNWLESRLAMLGEEFAGIMLISG   53 (176)
T ss_pred             cEEEEEEecCCCcHHHHHHHHHHHhcCCcchHHHHHHhhcceeEEEEEee
Confidence            46899999999999999999999999999999999999999888888864

>cd04881 ACT_HSDH-Hom ACT_HSDH_Hom CD includes the C-terminal ACT domain of the NAD(P)H-dependent, homoserine dehydrogenase (HSDH) and related domains

Probab=97.20  E-value=0.0045  Score=41.06  Aligned_cols=36  Identities=17%  Similarity=0.315  Sum_probs=31.7

Q ss_pred             EEEEEeCCcccHHHHHHHHHHHCCceEEEEEEEecC
Q 028501           16 IVQLSFGDRLGALIDTMNALKDLGLDVAKGTVNTEG   51 (208)
Q Consensus        16 ~v~v~~~DrpGLl~~i~~~L~~~gl~I~~a~i~t~~   51 (208)
                      -+.+.+.|+||+++++++.|+++|++|......+..
T Consensus         2 yl~i~~~d~~g~l~~i~~~l~~~~i~I~~~~~~~~~   37 (79)
T cd04881           2 YLRLTVKDKPGVLAKITGILAEHGISIESVIQKEAD   37 (79)
T ss_pred             EEEEEeCCCCcHHHHHHHHHHHcCCCeEEEEEcccC
Confidence            477889999999999999999999999988776543

The ACT_HSDH_Hom CD includes the C-terminal ACT domain of the NAD(P)H-dependent, homoserine dehydrogenase (HSDH) encoded by the hom gene of Bacillus subtilis and other related sequences. HSDH reduces aspartate semi-aldehyde to the amino acid homoserine, one that is required for the biosynthesis of Met, Thr, and Ile from Asp. Neither the enzyme nor the aspartate pathway is found in the animal kingdom. This mostly bacterial HSDH group has a C-terminal ACT domain and is believed to be involved in enzyme regulation. A C-terminal deletion in the Corynebacterium glutamicum HSDH abolished allosteric inhibition by L-threonine. Members of this CD belong to the superfamily of ACT regulatory domains.

>cd04880 ACT_AAAH-PDT-like ACT domain of the nonheme iron-dependent, aromatic amino acid hydroxylases (AAAH)

Probab=97.14  E-value=0.0077  Score=40.46  Aligned_cols=49  Identities=20%  Similarity=0.424  Sum_probs=39.2

Q ss_pred             EEEEecCcchHHHHHHHHHHhCCccEEEEEEEecCC-eEEEEEEEEeCCC
Q 028501          132 LYIETADRPGLLVEIMKIIADVNVDVESAEIDTEGL-VAKDKFHVSYGGA  180 (208)
Q Consensus       132 i~v~~~Dr~GlL~~i~~~l~~~~i~I~~a~i~t~~~-~~~~~f~v~~~g~  180 (208)
                      +.+..+|+||-|+++...|+++|+||.++......+ ...-.|+++-+|.
T Consensus         2 l~~~l~d~pG~L~~vL~~f~~~~vni~~I~Srp~~~~~~~~~f~id~~~~   51 (75)
T cd04880           2 LVFSLKNKPGALAKALKVFAERGINLTKIESRPSRKGLWEYEFFVDFEGH   51 (75)
T ss_pred             EEEEeCCcCCHHHHHHHHHHHCCCCEEEEEeeecCCCCceEEEEEEEECC
Confidence            345568999999999999999999999998877655 3445788876664

ACT domain of the nonheme iron-dependent, aromatic amino acid hydroxylases (AAAH): Phenylalanine hydroxylases (PAH), tyrosine hydroxylases (TH) and tryptophan hydroxylases (TPH), both peripheral (TPH1) and neuronal (TPH2) enzymes. This family of enzymes shares a common catalytic mechanism, in which dioxygen is used by an active site containing a single, reduced iron atom to hydroxylate an unactivated aromatic substrate, concomitant with a two-electron oxidation of tetrahydropterin (BH4) cofactor to its quinonoid dihydropterin form. Eukaryotic AAAHs have an N-terminal ACT (regulatory) domain, a middle catalytic domain and a C-terminal domain which is responsible for the oligomeric state of the enzyme forming a domain-swapped tetrameric coiled-coil. The PAH, TH, and TPH enzymes contain highly conserved catalytic domains but distinct N-terminal ACT domains and differ in their mech

>cd04883 ACT_AcuB C-terminal ACT domain of the Bacillus subtilis acetoin utilization protein, AcuB

Probab=97.13  E-value=0.0044  Score=41.00  Aligned_cols=36  Identities=31%  Similarity=0.471  Sum_probs=31.8

Q ss_pred             EEEEEEecCcchHHHHHHHHHHhCCccEEEEEEEec
Q 028501          130 SLLYIETADRPGLLVEIMKIIADVNVDVESAEIDTE  165 (208)
Q Consensus       130 ~~i~v~~~Dr~GlL~~i~~~l~~~~i~I~~a~i~t~  165 (208)
                      +.+.+..+|+||.|..+++.|+++|+||.++.....
T Consensus         2 ~~~~v~~~d~pG~l~~i~~~l~~~~inI~~i~~~~~   37 (72)
T cd04883           2 SQIEVRVPDRPGQLADIAAIFKDRGVNIVSVLVYPS   37 (72)
T ss_pred             cEEEEEECCCCCHHHHHHHHHHHcCCCEEEEEEecc
Confidence            467888999999999999999999999999876543

This CD includes the C-terminal ACT domain of the Bacillus subtilis acetoin utilization protein, AcuB. AcuB is putatively involved in the anaerobic catabolism of acetoin, and related proteins. Studies report the induction of AcuB by nitrate respiration and also by fermentation. Since acetoin can be secreted and later serve as a source of carbon, it has been proposed that, during anaerobic growth when other carbon sources are exhausted, the induction of the AcuB protein results in acetoin catabolism. AcuB-like proteins have two N-terminal tandem CBS domains and a single C-terminal ACT domain. Members of this CD belong to the superfamily of ACT regulatory domains.

>cd04874 ACT_Af1403 N-terminal ACT domain of the yet uncharacterized, small (~133 a

Probab=97.13  E-value=0.0059  Score=39.83  Aligned_cols=36  Identities=17%  Similarity=0.199  Sum_probs=32.3

Q ss_pred             EEEEEeCCcccHHHHHHHHHHHCCceEEEEEEEecC
Q 028501           16 IVQLSFGDRLGALIDTMNALKDLGLDVAKGTVNTEG   51 (208)
Q Consensus        16 ~v~v~~~DrpGLl~~i~~~L~~~gl~I~~a~i~t~~   51 (208)
                      .+.+.++|+||.|++++..|++++++|.+....+..
T Consensus         2 ~l~i~~~d~~g~l~~i~~~l~~~~~~i~~~~~~~~~   37 (72)
T cd04874           2 ALSIIAEDKPGVLRDLTGVIAEHGGNITYTQQFIER   37 (72)
T ss_pred             eEEEEeCCCCChHHHHHHHHHhCCCCEEEEEEeccC
Confidence            578899999999999999999999999988876653

a.), putative amino acid binding protein, Af1403, and related domains. This CD includes the N-terminal ACT domain of the yet uncharacterized, small (~133 a.a.), putative amino acid binding protein, Af1403, from Archaeoglobus fulgidus and other related archeal ACT domains. Members of this CD belong to the superfamily of ACT regulatory domains.

>cd04904 ACT_AAAH ACT domain of the nonheme iron-dependent, aromatic amino acid hydroxylases (AAAH)

Probab=97.12  E-value=0.0038  Score=42.17  Aligned_cols=48  Identities=17%  Similarity=0.239  Sum_probs=39.8

Q ss_pred             EEEEecCcchHHHHHHHHHHhCCccEEEEEEEecCCeEE-EEEEEEeCC
Q 028501          132 LYIETADRPGLLVEIMKIIADVNVDVESAEIDTEGLVAK-DKFHVSYGG  179 (208)
Q Consensus       132 i~v~~~Dr~GlL~~i~~~l~~~~i~I~~a~i~t~~~~~~-~~f~v~~~g  179 (208)
                      +-+...|+||-|+++...|+.+|+|+.++..-...+... -.|+|+-+|
T Consensus         3 l~f~l~~~pG~L~~vL~~f~~~~iNlt~IeSRP~~~~~~~y~Ffvd~~~   51 (74)
T cd04904           3 LIFSLKEEVGALARALKLFEEFGVNLTHIESRPSRRNGSEYEFFVDCEV   51 (74)
T ss_pred             EEEEeCCCCcHHHHHHHHHHHCCCcEEEEECCCCCCCCceEEEEEEEEc
Confidence            445558899999999999999999999999988776644 468887667

ACT domain of the nonheme iron-dependent, aromatic amino acid hydroxylases (AAAH): Phenylalanine hydroxylases (PAH), tyrosine hydroxylases (TH) and tryptophan hydroxylases (TPH), both peripheral (TPH1) and neuronal (TPH2) enzymes. This family of enzymes shares a common catalytic mechanism, in which dioxygen is used by an active site containing a single, reduced iron atom to hydroxylate an unactivated aromatic substrate, concomitant with a two-electron oxidation of tetrahydropterin (BH4) cofactor to its quinonoid dihydropterin form. PAH catalyzes the hydroxylation of L-Phe to L-Tyr, the first step in the catabolic degradation of L-Phe; TH catalyses the hydroxylation of L-Tyr to 3,4-dihydroxyphenylalanine, the rate limiting step in the biosynthesis of catecholamines; and TPH catalyses the hydroxylation of L-Trp to 5-hydroxytryptophan, the rate limiting step in the biosynthesis of 5-hydroxy

>PRK08577 hypothetical protein; Provisional

Probab=97.11  E-value=0.0052  Score=46.51  Aligned_cols=49  Identities=27%  Similarity=0.319  Sum_probs=40.0

Q ss_pred             CeEEEEEEecCcchHHHHHHHHHHhCCccEEEEEEEecC-Ce-EEEEEEEE
Q 028501          128 KRSLLYIETADRPGLLVEIMKIIADVNVDVESAEIDTEG-LV-AKDKFHVS  176 (208)
Q Consensus       128 ~~~~i~v~~~Dr~GlL~~i~~~l~~~~i~I~~a~i~t~~-~~-~~~~f~v~  176 (208)
                      ..+.+.+.+.|+||+|++|+++|+++|++|.+.++.+.. +. +...|.+.
T Consensus        55 ~~~~I~V~~~Dr~GvLa~I~~~l~~~~inI~~i~~~~~~~~~~~~i~l~ve  105 (136)
T PRK08577         55 KLVEIELVVEDRPGVLAKITGLLAEHGVDILATECEELKRGELAECVIIVD  105 (136)
T ss_pred             cEEEEEEEEcCCCCHHHHHHHHHHHCCCCEEEEEEEEecCCCEEEEEEEEE
Confidence            479999999999999999999999999999999887754 22 33444443

>cd04898 ACT_ACR-like_4 ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein)

Probab=97.10  E-value=0.00072  Score=45.54  Aligned_cols=67  Identities=15%  Similarity=0.118  Sum_probs=50.3

Q ss_pred             EEEEecCcchHHHHHHHHHHhCCccEEEEEEEec--CCeEEEE--EEEEeCCCCCCh-HHHHHHHHHHHHHc
Q 028501          132 LYIETADRPGLLVEIMKIIADVNVDVESAEIDTE--GLVAKDK--FHVSYGGAALNS-SLSQVLVNCLRYYL  198 (208)
Q Consensus       132 i~v~~~Dr~GlL~~i~~~l~~~~i~I~~a~i~t~--~~~~~~~--f~v~~~g~~~~~-~~~~~l~~~l~~~l  198 (208)
                      ++++|.-||-.+||+|-+|+.+|+-|.+|.|..+  +++.+.+  |.+.+.++.++. ..+..+.+.+...|
T Consensus         3 VElsGkGRPrVfyDvTlALK~L~i~IFsaeIgR~~~~~r~wEvyR~LL~e~~~~~~~~~~r~~i~drv~~~l   74 (77)
T cd04898           3 VELSGKGRPRVFYDITLALKKLGICIFSAEIGRHSTGDRQWEVYRVLLLEHDRLKLGGRQRSKVVDRVTKTL   74 (77)
T ss_pred             ccccCCCCcceeeehHHHHHHhccEEEehhhhhhhcCCeeEEEEEEeecCCCccccchHHHHHHHHHHHHHH
Confidence            7899999999999999999999999999999764  4565554  555654444553 35667776665443

This CD includes the C-terminal ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) have been described, however, the ACR-like sequences in this CD are distinct from those characterized. This CD includes the Oryza sativa ACR-like protein (Os05g0113000) encoded on chromosome 5 and the Arabidopsis thaliana predicted gene product, At2g39570. Members of this CD belong to the superfamily of ACT regulatory domains.

>PRK11152 ilvM acetolactate synthase 2 regulatory subunit; Provisional

Probab=97.09  E-value=0.0047  Score=42.17  Aligned_cols=61  Identities=7%  Similarity=0.131  Sum_probs=45.3

Q ss_pred             EEEEEEeCCcccHHHHHHHHHHHCCceEEEEEEEecCCe-e-EEEEEEeeCCCCCCCCCHHHHHHHHHHHHH
Q 028501           15 TIVQLSFGDRLGALIDTMNALKDLGLDVAKGTVNTEGSV-K-QTKFFITRLDTGRKVEDPDLLERIRLTIIN   84 (208)
Q Consensus        15 ~~v~v~~~DrpGLl~~i~~~L~~~gl~I~~a~i~t~~~~-~-~d~F~v~~~~~g~~~~~~~~~~~l~~~L~~   84 (208)
                      ..+.+...|+||.|+++++.|...|+||.+-.+..+.+. . --++.+.  + .      ..++.|.+.|.+
T Consensus         4 ~~lsi~v~n~pGVL~Ri~~lf~rRGfnI~sl~v~~t~~~~~sriti~v~--~-~------~~i~ql~kQL~K   66 (76)
T PRK11152          4 HQLTIKARFRPEVLERVLRVVRHRGFQVCSMNMTQNTDAQNINIELTVA--S-E------RPIDLLSSQLNK   66 (76)
T ss_pred             EEEEEEEECCccHHHHHHHHHhcCCeeeeeEEeeecCCCCEEEEEEEEC--C-C------chHHHHHHHHhc
Confidence            468999999999999999999999999999988776553 2 2234442  2 2      345667777665

>TIGR00119 acolac_sm acetolactate synthase, small subunit

Probab=97.09  E-value=0.0047  Score=48.05  Aligned_cols=61  Identities=16%  Similarity=0.260  Sum_probs=46.2

Q ss_pred             EEEEEeCCcccHHHHHHHHHHHCCceEEEEEEEecCC-ee-EEEEEEeeCCCCCCCCCHHHHHHHHHHHHH
Q 028501           16 IVQLSFGDRLGALIDTMNALKDLGLDVAKGTVNTEGS-VK-QTKFFITRLDTGRKVEDPDLLERIRLTIIN   84 (208)
Q Consensus        16 ~v~v~~~DrpGLl~~i~~~L~~~gl~I~~a~i~t~~~-~~-~d~F~v~~~~~g~~~~~~~~~~~l~~~L~~   84 (208)
                      .++|...|+||.|+++++.|++.|+||.+-.+....+ +. .-+|.+.    |.    +...+++.+.|.+
T Consensus         3 ~isI~ven~pGvL~rI~~lf~rrg~NI~Sl~v~~t~~~~~sriti~V~----~d----~~~i~qi~kQl~K   65 (157)
T TIGR00119         3 ILSVLVENEPGVLSRVAGLFTRRGFNIESLTVGPTEDPDLSRMTIVVV----GD----DKVLEQITKQLNK   65 (157)
T ss_pred             EEEEEEcCCCcHHHHHHHHHHhCCceEEEEEEeecCCCCEEEEEEEEE----CC----HHHHHHHHHHHhc
Confidence            5888999999999999999999999999888877763 33 2334443    21    3566777777766

acetohydroxyacid synthase is a synonym.

>PRK04435 hypothetical protein; Provisional

Probab=97.08  E-value=0.0083  Score=46.13  Aligned_cols=64  Identities=16%  Similarity=0.108  Sum_probs=47.6

Q ss_pred             CCccccEEE-EecCC-CCeEEEEEEecCcchHHHHHHHHHHhCCccEEEEEEEecC-CeEEEEEEEE
Q 028501          113 DVDIATHIH-VKEDG-PKRSLLYIETADRPGLLVEIMKIIADVNVDVESAEIDTEG-LVAKDKFHVS  176 (208)
Q Consensus       113 ~~~~~~~V~-~~~~~-~~~~~i~v~~~Dr~GlL~~i~~~l~~~~i~I~~a~i~t~~-~~~~~~f~v~  176 (208)
                      .+.++..|- |+... ...+.+.+.+.|+||+|++|++.|++.|+||..+...... +.+.-.|.+.
T Consensus        51 ~ykykd~vf~~~~~~~~r~vtL~i~l~Dr~GlLs~Il~~IA~~~aNIltI~q~i~~~g~a~vs~tVe  117 (147)
T PRK04435         51 FYKYKDYVFPFDEMVKGKIITLSLLLEDRSGTLSKVLNVIAEAGGNILTINQSIPLQGRANVTISID  117 (147)
T ss_pred             HhcCCCeeECccccCCCcEEEEEEEEecCCCHHHHHHHHHHHcCCCeEEEEEEcCCCCEEEEEEEEE
Confidence            345555554 44443 4589999999999999999999999999999999875533 4445556664

>PRK11895 ilvH acetolactate synthase 3 regulatory subunit; Reviewed

Probab=97.05  E-value=0.0055  Score=47.86  Aligned_cols=62  Identities=13%  Similarity=0.202  Sum_probs=46.2

Q ss_pred             EEEEEEeCCcccHHHHHHHHHHHCCceEEEEEEEecCC-ee-EEEEEEeeCCCCCCCCCHHHHHHHHHHHHH
Q 028501           15 TIVQLSFGDRLGALIDTMNALKDLGLDVAKGTVNTEGS-VK-QTKFFITRLDTGRKVEDPDLLERIRLTIIN   84 (208)
Q Consensus        15 ~~v~v~~~DrpGLl~~i~~~L~~~gl~I~~a~i~t~~~-~~-~d~F~v~~~~~g~~~~~~~~~~~l~~~L~~   84 (208)
                      ..++|...|+||.|++|++.|++.|+||.+-.+....+ +. .-+|.+.    |.    +..++++.+.|.+
T Consensus         3 ~~IsV~veN~pGvL~rI~~lf~rrg~NI~Sl~v~~te~~~~sriti~V~----~~----~~~i~qi~kQl~K   66 (161)
T PRK11895          3 HTLSVLVENEPGVLSRVAGLFSRRGYNIESLTVGPTEDPGLSRMTIVTS----GD----EQVIEQITKQLNK   66 (161)
T ss_pred             EEEEEEEcCCCcHHHHHHHHHHhCCCcEEEEEeeecCCCCEEEEEEEEE----CC----HHHHHHHHHHHhc
Confidence            36889999999999999999999999999888776653 32 2334443    22    3566777777766

>cd04878 ACT_AHAS N-terminal ACT domain of the Escherichia coli IlvH-like regulatory subunit of acetohydroxyacid synthase (AHAS)

Probab=97.00  E-value=0.012  Score=38.17  Aligned_cols=35  Identities=14%  Similarity=0.197  Sum_probs=31.9

Q ss_pred             EEEEEeCCcccHHHHHHHHHHHCCceEEEEEEEec
Q 028501           16 IVQLSFGDRLGALIDTMNALKDLGLDVAKGTVNTE   50 (208)
Q Consensus        16 ~v~v~~~DrpGLl~~i~~~L~~~gl~I~~a~i~t~   50 (208)
                      .+.+.+.|+||++++++..|+++|++|......+.
T Consensus         2 ~l~i~~~d~~g~l~~i~~~l~~~~~~i~~~~~~~~   36 (72)
T cd04878           2 TLSVLVENEPGVLNRISGLFARRGFNIESLTVGPT   36 (72)
T ss_pred             EEEEEEcCCCcHHHHHHHHHHhCCCCEEEEEeeec
Confidence            46788999999999999999999999998888765

ACT_AHAS: N-terminal ACT domain of the Escherichia coli IlvH-like regulatory subunit of acetohydroxyacid synthase (AHAS). AHAS catalyses the first common step in the biosynthesis of the three branched-chain amino acids. The first step involves the condensation of either pyruvate or 2-ketobutyrate with the two-carbon hydroxyethyl fragment derived from another pyruvate molecule, covalently bound to the coenzyme thiamine diphosphate. Bacterial AHASs generally consist of regulatory and catalytic subunits. The effector (valine) binding sites are proposed to be located in two symmetrically related positions in the interface between a pair of N-terminal ACT domains with the C-terminal domain of IlvH contacting the catalytic dimer. Plants Arabidopsis and Oryza have tandem IlvH subunits; both the first and second ACT domain sequences are present in this CD. Members of

>PRK08577 hypothetical protein; Provisional

Probab=96.98  E-value=0.016  Score=43.74  Aligned_cols=40  Identities=20%  Similarity=0.285  Sum_probs=35.9

Q ss_pred             CCeEEEEEEeCCcccHHHHHHHHHHHCCceEEEEEEEecC
Q 028501           12 SDATIVQLSFGDRLGALIDTMNALKDLGLDVAKGTVNTEG   51 (208)
Q Consensus        12 ~~~~~v~v~~~DrpGLl~~i~~~L~~~gl~I~~a~i~t~~   51 (208)
                      +....+.|.+.|+||+|++++++|+++|++|.+....+..
T Consensus        54 k~~~~I~V~~~Dr~GvLa~I~~~l~~~~inI~~i~~~~~~   93 (136)
T PRK08577         54 KKLVEIELVVEDRPGVLAKITGLLAEHGVDILATECEELK   93 (136)
T ss_pred             ccEEEEEEEEcCCCCHHHHHHHHHHHCCCCEEEEEEEEec
Confidence            3467899999999999999999999999999988877765

>cd04879 ACT_3PGDH-like ACT_3PGDH-like CD includes the C-terminal ACT (regulatory) domain of D-3-phosphoglycerate dehydrogenase (3PGDH)

Probab=96.97  E-value=0.004  Score=40.35  Aligned_cols=44  Identities=14%  Similarity=0.180  Sum_probs=36.2

Q ss_pred             EEEEeCCcccHHHHHHHHHHHCCceEEEEEEEecC--CeeEEEEEE
Q 028501           17 VQLSFGDRLGALIDTMNALKDLGLDVAKGTVNTEG--SVKQTKFFI   60 (208)
Q Consensus        17 v~v~~~DrpGLl~~i~~~L~~~gl~I~~a~i~t~~--~~~~d~F~v   60 (208)
                      +.|.++|++|++++++++|+++|++|.+.......  +...-.|.+
T Consensus         2 l~v~~~d~~g~l~~i~~~l~~~~~nI~~~~~~~~~~~~~~~~~~~v   47 (71)
T cd04879           2 LLIVHKDVPGVIGKVGTILGEHGINIAAMQVGRKEKGGIAYMVLDV   47 (71)
T ss_pred             EEEEecCCCCHHHHHHHHHHhcCCCeeeEEEeccCCCCEEEEEEEc
Confidence            67899999999999999999999999999887765  334434544

ACT_3PGDH-like: The ACT_3PGDH-like CD includes the C-terminal ACT (regulatory) domain of D-3-phosphoglycerate dehydrogenase (3PGDH), with or without an extended C-terminal (xct) region found in various bacteria, archaea, fungi, and plants. 3PGDH is an enzyme that belongs to the D-isomer specific, 2-hydroxyacid dehydrogenase family and catalyzes the oxidation of D-3-phosphoglycerate to 3- phosphohydroxypyruvate, which is the first step in the biosynthesis of L-serine, using NAD+ as the oxidizing agent. In bacteria, 3PGDH is feedback controlled by the end product L-serine in an allosteric manner. In the Escherichia coli homotetrameric enzyme, the interface at adjacent ACT (regulatory) domains couples to create an extended beta-sheet. Each regulatory interface forms two serine-binding sites. The mechanism by which serine transmits inhibition to the active

>cd04884 ACT_CBS C-terminal ACT domain of the cystathionine beta-synthase (CBS) domain protein found in Thermotoga maritima, Tm0935, and delta proteobacteria

Probab=96.91  E-value=0.0081  Score=40.01  Aligned_cols=34  Identities=15%  Similarity=0.267  Sum_probs=30.2

Q ss_pred             EEEEeCCcccHHHHHHHHHHHCCceEEEEEEEec
Q 028501           17 VQLSFGDRLGALIDTMNALKDLGLDVAKGTVNTE   50 (208)
Q Consensus        17 v~v~~~DrpGLl~~i~~~L~~~gl~I~~a~i~t~   50 (208)
                      +.+.-+|+||-|++++..|+++|.||.+......
T Consensus         2 l~v~~~d~pG~L~~l~~~i~~~g~nI~~i~~~~~   35 (72)
T cd04884           2 FTFLLEDKPGTLKPVVDTLREFNARIISILTAFE   35 (72)
T ss_pred             EEEEecCCCccHHHHHHHHHHCCCeEEEEEeccc
Confidence            6788999999999999999999999997765554

This CD includes the C-terminal ACT domain of the cystathionine beta-synthase (CBS) domain protein found in Thermotoga maritima, Tm0935, and delta proteobacteria. This protein has two N-terminal tandem CBS domains and a single C-terminal ACT domain. The CBS domain is found in a wide range of proteins, often in tandem arrangements and together with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Members of this CD belong to the superfamily of ACT regulatory domains.

>PRK11899 prephenate dehydratase; Provisional

Probab=96.89  E-value=0.0066  Score=51.56  Aligned_cols=60  Identities=13%  Similarity=0.129  Sum_probs=48.2

Q ss_pred             eEEEEEEecCcchHHHHHHHHHHhCCccEEEEEEEecCCeEEE-EEEEEeCCCCCChHHHH
Q 028501          129 RSLLYIETADRPGLLVEIMKIIADVNVDVESAEIDTEGLVAKD-KFHVSYGGAALNSSLSQ  188 (208)
Q Consensus       129 ~~~i~v~~~Dr~GlL~~i~~~l~~~~i~I~~a~i~t~~~~~~~-~f~v~~~g~~~~~~~~~  188 (208)
                      .+.+-+...|+||.|+++...|+++|||+.++..-..+++.+. .||++-+|..-++..++
T Consensus       194 ktsl~~~~~~~pGaL~~vL~~Fa~~gINLtkIeSRP~~~~~~~Y~F~id~eg~~~d~~v~~  254 (279)
T PRK11899        194 VTTFVFRVRNIPAALYKALGGFATNGVNMTKLESYMVGGSFTATQFYADIEGHPEDRNVAL  254 (279)
T ss_pred             eEEEEEEeCCCCChHHHHHHHHHHcCCCeeeEEeeecCCCCceEEEEEEEECCCCCHHHHH
Confidence            5777777789999999999999999999999999988777555 78887677653333333

>cd04929 ACT_TPH ACT domain of the nonheme iron-dependent aromatic amino acid hydroxylase, tryptophan hydroxylases (TPH), both peripheral (TPH1) and neuronal (TPH2) enzymes

Probab=96.83  E-value=0.0087  Score=40.57  Aligned_cols=50  Identities=12%  Similarity=0.161  Sum_probs=40.8

Q ss_pred             EEEEecCcchHHHHHHHHHHhCCccEEEEEEEecCCeEE-EEEEEEeCCCC
Q 028501          132 LYIETADRPGLLVEIMKIIADVNVDVESAEIDTEGLVAK-DKFHVSYGGAA  181 (208)
Q Consensus       132 i~v~~~Dr~GlL~~i~~~l~~~~i~I~~a~i~t~~~~~~-~~f~v~~~g~~  181 (208)
                      +-+..+|+||-|+++...|+.+|+|+.++.........+ -.|+|+-+|..
T Consensus         3 l~~~l~~~~g~L~~iL~~f~~~~inl~~IeSRP~~~~~~~y~F~id~e~~~   53 (74)
T cd04929           3 VIFSLKNEVGGLAKALKLFQELGINVVHIESRKSKRRSSEFEIFVDCECDQ   53 (74)
T ss_pred             EEEEcCCCCcHHHHHHHHHHHCCCCEEEEEeccCCCCCceEEEEEEEEcCH
Confidence            444558999999999999999999999999988765544 46888767765

ACT domain of the nonheme iron-dependent aromatic amino acid hydroxylase, tryptophan hydroxylases (TPH), both peripheral (TPH1) and neuronal (TPH2) enzymes. TPH catalyses the hydroxylation of L-Trp to 5-hydroxytryptophan, the rate limiting step in the biosynthesis of 5-hydroxytryptamine (serotonin) and the first reaction in the synthesis of melatonin. Very little is known about the role of the ACT domain in TPH, which appears to be regulated by phosphorylation but not by its substrate or cofactor. Members of this CD belong to the superfamily of ACT regulatory domains.

>cd04876 ACT_RelA-SpoT ACT domain found C-terminal of the RelA/SpoT domains

Probab=96.81  E-value=0.02  Score=36.14  Aligned_cols=35  Identities=17%  Similarity=0.293  Sum_probs=31.6

Q ss_pred             EEEEeCCcccHHHHHHHHHHHCCceEEEEEEEecC
Q 028501           17 VQLSFGDRLGALIDTMNALKDLGLDVAKGTVNTEG   51 (208)
Q Consensus        17 v~v~~~DrpGLl~~i~~~L~~~gl~I~~a~i~t~~   51 (208)
                      |.+.++|+||.+..++..|.+++++|....+...+
T Consensus         1 l~v~~~~~~~~l~~i~~~l~~~~~~i~~~~~~~~~   35 (71)
T cd04876           1 IRVEAIDRPGLLADITTVIAEEKINILSVNTRTDD   35 (71)
T ss_pred             CEEEEeccCcHHHHHHHHHHhCCCCEEEEEeEECC
Confidence            46789999999999999999999999999887765

ACT_RelA-SpoT: the ACT domain found C-terminal of the RelA/SpoT domains. Enzymes of the Rel/Spo family enable bacteria to survive prolonged periods of nutrient limitation by controlling guanosine-3'-diphosphate-5'-(tri)diphosphate ((p)ppGpp) production and subsequent rRNA repression (stringent response). Both the synthesis of (p)ppGpp from ATP and GDP(GTP), and its hydrolysis to GDP(GTP) and pyrophosphate, are catalyzed by Rel/Spo proteins. In Escherichia coli and its close relatives, the metabolism of (p)ppGpp is governed by two homologous proteins, RelA and SpoT. The RelA protein catalyzes (p)ppGpp synthesis in a reaction requiring its binding to ribosomes bearing codon-specified uncharged tRNA. The major role of the SpoT protein is the breakdown of (p)ppGpp by a manganese-dependent (p)ppGpp pyrophosphohydrolase activity. Although the stringent response appears to be tightly regulated by these two enzymes i

>cd04884 ACT_CBS C-terminal ACT domain of the cystathionine beta-synthase (CBS) domain protein found in Thermotoga maritima, Tm0935, and delta proteobacteria

Probab=96.73  E-value=0.008  Score=40.02  Aligned_cols=34  Identities=21%  Similarity=0.313  Sum_probs=30.6

Q ss_pred             EEEEecCcchHHHHHHHHHHhCCccEEEEEEEec
Q 028501          132 LYIETADRPGLLVEIMKIIADVNVDVESAEIDTE  165 (208)
Q Consensus       132 i~v~~~Dr~GlL~~i~~~l~~~~i~I~~a~i~t~  165 (208)
                      +.+.-+|+||-|++++..|+++|+||.++.....
T Consensus         2 l~v~~~d~pG~L~~l~~~i~~~g~nI~~i~~~~~   35 (72)
T cd04884           2 FTFLLEDKPGTLKPVVDTLREFNARIISILTAFE   35 (72)
T ss_pred             EEEEecCCCccHHHHHHHHHHCCCeEEEEEeccc
Confidence            5678899999999999999999999999976654

This CD includes the C-terminal ACT domain of the cystathionine beta-synthase (CBS) domain protein found in Thermotoga maritima, Tm0935, and delta proteobacteria. This protein has two N-terminal tandem CBS domains and a single C-terminal ACT domain. The CBS domain is found in a wide range of proteins, often in tandem arrangements and together with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Members of this CD belong to the superfamily of ACT regulatory domains.

>cd02116 ACT ACT domains are commonly involved in specifically binding an amino acid or other small ligand leading to regulation of the enzyme

Probab=96.73  E-value=0.0078  Score=36.16  Aligned_cols=35  Identities=34%  Similarity=0.718  Sum_probs=31.4

Q ss_pred             EEEEecCcchHHHHHHHHHHhCCccEEEEEEEecC
Q 028501          132 LYIETADRPGLLVEIMKIIADVNVDVESAEIDTEG  166 (208)
Q Consensus       132 i~v~~~Dr~GlL~~i~~~l~~~~i~I~~a~i~t~~  166 (208)
                      +.+.+.|++|++++|+..|++.|++|..+......
T Consensus         1 i~i~~~~~~~~l~~i~~~l~~~~~~i~~~~~~~~~   35 (60)
T cd02116           1 LTVSGPDRPGLLAKVLSVLAEAGINITSIEQRTSG   35 (60)
T ss_pred             CEEEecCCCchHHHHHHHHHHCCCcEEEEEeEEcC
Confidence            46788999999999999999999999999987654

Members of this CD belong to the superfamily of ACT regulatory domains. Pairs of ACT domains are commonly involved in specifically binding an amino acid or other small ligand leading to regulation of the enzyme. The ACT domain has been detected in a number of diverse proteins; some of these proteins are involved in amino acid and purine biosynthesis, phenylalanine hydroxylation, regulation of bacterial metabolism and transcription, and many remain to be characterized. ACT domain-containing enzymes involved in amino acid and purine synthesis are in many cases allosteric enzymes with complex regulation enforced by the binding of ligands. The ACT domain is commonly involved in the binding of a small regulatory molecule, such as the amino acids L-Ser and L-Phe in the case of D-3-phosphoglycerate dehydrogenase and the bifunctional chorismate mutase-p

>PRK04435 hypothetical protein; Provisional

Probab=96.69  E-value=0.028  Score=43.23  Aligned_cols=73  Identities=14%  Similarity=0.148  Sum_probs=49.8

Q ss_pred             EeecCCCCeEEEEEEeCCcccHHHHHHHHHHHCCceEEEEEEEecCCe-eEEEEEEeeCCCCCCCCCHHHHHHHHHHHHH
Q 028501            6 IDQDSNSDATIVQLSFGDRLGALIDTMNALKDLGLDVAKGTVNTEGSV-KQTKFFITRLDTGRKVEDPDLLERIRLTIIN   84 (208)
Q Consensus         6 ~~~~~~~~~~~v~v~~~DrpGLl~~i~~~L~~~gl~I~~a~i~t~~~~-~~d~F~v~~~~~g~~~~~~~~~~~l~~~L~~   84 (208)
                      ++.........+.+...|+||+|++|+++|+++|+||.........++ +.-.|.+...+  .    ...++.|.+.|+.
T Consensus        61 ~~~~~~~r~vtL~i~l~Dr~GlLs~Il~~IA~~~aNIltI~q~i~~~g~a~vs~tVevs~--~----~~~L~~Li~~L~~  134 (147)
T PRK04435         61 FDEMVKGKIITLSLLLEDRSGTLSKVLNVIAEAGGNILTINQSIPLQGRANVTISIDTSS--M----EGDIDELLEKLRN  134 (147)
T ss_pred             ccccCCCcEEEEEEEEecCCCHHHHHHHHHHHcCCCeEEEEEEcCCCCEEEEEEEEEeCC--h----HHHHHHHHHHHHc
Confidence            344445566789999999999999999999999999997776554444 33345554432  1    1245555555544

>cd02116 ACT ACT domains are commonly involved in specifically binding an amino acid or other small ligand leading to regulation of the enzyme

Probab=96.68  E-value=0.026  Score=33.72  Aligned_cols=35  Identities=26%  Similarity=0.411  Sum_probs=31.4

Q ss_pred             EEEEeCCcccHHHHHHHHHHHCCceEEEEEEEecC
Q 028501           17 VQLSFGDRLGALIDTMNALKDLGLDVAKGTVNTEG   51 (208)
Q Consensus        17 v~v~~~DrpGLl~~i~~~L~~~gl~I~~a~i~t~~   51 (208)
                      |.+.++|++|.++++++.|.+.|++|.........
T Consensus         1 i~i~~~~~~~~l~~i~~~l~~~~~~i~~~~~~~~~   35 (60)
T cd02116           1 LTVSGPDRPGLLAKVLSVLAEAGINITSIEQRTSG   35 (60)
T ss_pred             CEEEecCCCchHHHHHHHHHHCCCcEEEEEeEEcC
Confidence            46889999999999999999999999998887654

Members of this CD belong to the superfamily of ACT regulatory domains. Pairs of ACT domains are commonly involved in specifically binding an amino acid or other small ligand leading to regulation of the enzyme. The ACT domain has been detected in a number of diverse proteins; some of these proteins are involved in amino acid and purine biosynthesis, phenylalanine hydroxylation, regulation of bacterial metabolism and transcription, and many remain to be characterized. ACT domain-containing enzymes involved in amino acid and purine synthesis are in many cases allosteric enzymes with complex regulation enforced by the binding of ligands. The ACT domain is commonly involved in the binding of a small regulatory molecule, such as the amino acids L-Ser and L-Phe in the case of D-3-phosphoglycerate dehydrogenase and the bifunctional chorismate mutase-p

>cd04903 ACT_LSD C-terminal ACT domain of the L-serine dehydratase (LSD), iron-sulfur-dependent, beta subunit

Probab=96.63  E-value=0.027  Score=36.41  Aligned_cols=34  Identities=21%  Similarity=0.304  Sum_probs=30.8

Q ss_pred             EEEEeCCcccHHHHHHHHHHHCCceEEEEEEEec
Q 028501           17 VQLSFGDRLGALIDTMNALKDLGLDVAKGTVNTE   50 (208)
Q Consensus        17 v~v~~~DrpGLl~~i~~~L~~~gl~I~~a~i~t~   50 (208)
                      +.+.++|+||.+++++..|+++|++|.+......
T Consensus         2 l~i~~~d~~g~l~~i~~~l~~~~~~I~~~~~~~~   35 (71)
T cd04903           2 LIVVHKDKPGAIAKVTSVLADHEINIAFMRVSRK   35 (71)
T ss_pred             EEEEeCCCCChHHHHHHHHHHcCcCeeeeEEEec
Confidence            5788999999999999999999999998887763

The C-terminal ACT domain of the L-serine dehydratase (LSD), iron-sulfur-dependent, beta subunit, found in various bacterial anaerobes such as Clostridium, Bacillis, and Treponema species. These enzymes catalyze the deamination of L-serine, producing pyruvate and ammonia. Unlike the eukaryotic L-serine dehydratase, which requires the pyridoxal-5'-phosphate (PLP) cofactor, the prokaryotic L-serine dehydratase contains an [4Fe-4S] cluster instead of a PLP active site. The LSD alpha and beta subunits of the 'clostridial' enzyme are encoded by the sdhA and sdhB genes. The single subunit bacterial homologs of L-serine dehydratase (LSD1, LSD2, TdcG) present in Escherichia coli, and other enterobacterials, lack the ACT domain described here. Members of this CD belong to the superfamily of ACT regulatory domains.

>cd04876 ACT_RelA-SpoT ACT domain found C-terminal of the RelA/SpoT domains

Probab=96.63  E-value=0.012  Score=37.13  Aligned_cols=35  Identities=34%  Similarity=0.664  Sum_probs=31.7

Q ss_pred             EEEEecCcchHHHHHHHHHHhCCccEEEEEEEecC
Q 028501          132 LYIETADRPGLLVEIMKIIADVNVDVESAEIDTEG  166 (208)
Q Consensus       132 i~v~~~Dr~GlL~~i~~~l~~~~i~I~~a~i~t~~  166 (208)
                      +.+.+.|+||.+.+|+..|.+++++|.++.+...+
T Consensus         1 l~v~~~~~~~~l~~i~~~l~~~~~~i~~~~~~~~~   35 (71)
T cd04876           1 IRVEAIDRPGLLADITTVIAEEKINILSVNTRTDD   35 (71)
T ss_pred             CEEEEeccCcHHHHHHHHHHhCCCCEEEEEeEECC
Confidence            46789999999999999999999999999987765

ACT_RelA-SpoT: the ACT domain found C-terminal of the RelA/SpoT domains. Enzymes of the Rel/Spo family enable bacteria to survive prolonged periods of nutrient limitation by controlling guanosine-3'-diphosphate-5'-(tri)diphosphate ((p)ppGpp) production and subsequent rRNA repression (stringent response). Both the synthesis of (p)ppGpp from ATP and GDP(GTP), and its hydrolysis to GDP(GTP) and pyrophosphate, are catalyzed by Rel/Spo proteins. In Escherichia coli and its close relatives, the metabolism of (p)ppGpp is governed by two homologous proteins, RelA and SpoT. The RelA protein catalyzes (p)ppGpp synthesis in a reaction requiring its binding to ribosomes bearing codon-specified uncharged tRNA. The major role of the SpoT protein is the breakdown of (p)ppGpp by a manganese-dependent (p)ppGpp pyrophosphohydrolase activity. Although the stringent response appears to be tightly regulated by these two enzymes i

>cd04871 ACT_PSP_2 ACT domains found N-terminal of phosphoserine phosphatase (PSP, SerB)

Probab=96.61  E-value=0.0025  Score=44.24  Aligned_cols=69  Identities=14%  Similarity=0.151  Sum_probs=45.2

Q ss_pred             EEEEEecC-cchHHHHHHHHHHhCCccEEEEEEEec-----C----CeEEEEEEEEeCCCCCChHHHHHHHHHHHHHcCC
Q 028501          131 LLYIETAD-RPGLLVEIMKIIADVNVDVESAEIDTE-----G----LVAKDKFHVSYGGAALNSSLSQVLVNCLRYYLRR  200 (208)
Q Consensus       131 ~i~v~~~D-r~GlL~~i~~~l~~~~i~I~~a~i~t~-----~----~~~~~~f~v~~~g~~~~~~~~~~l~~~l~~~l~~  200 (208)
                      .++|.|.| +.|+++.+++.|+++|+||..++--+.     +    ......|.++  |.+.   ..+.|+++|.+.-..
T Consensus         1 ivtvlg~~~~a~~ia~Vs~~lA~~~~NI~~I~~l~~~~~~~~~~~~~~~~~e~~v~--~~~~---~~~~lr~~L~~la~e   75 (84)
T cd04871           1 IVTLLGRPLTAEQLAAVTRVVADQGLNIDRIRRLSGRVPLEEQDDSPKACVEFSVR--GQPA---DLEALRAALLELASE   75 (84)
T ss_pred             CEEEEcCcCCHHHHHHHHHHHHHcCCCHHHHHHhhccccccccCCCCcEEEEEEEe--CCCC---CHHHHHHHHHHHhcc
Confidence            37899999 999999999999999999987765321     1    1233456665  3332   235555555544444


Q ss_pred             CCCC
Q 028501          201 PETD  204 (208)
Q Consensus       201 ~~~~  204 (208)
                      -+-|
T Consensus        76 lgvD   79 (84)
T cd04871          76 LNVD   79 (84)
T ss_pred             cCce
Confidence            4444

The ACT_PSP_2 CD includes the second of the two ACT domains found N-terminal of phosphoserine phosphatase (PSP, SerB). PSPs belong to the L-2-haloacid dehalogenase-like protein superfamily. PSP is involved in serine metabolism; serine is synthesized from phosphoglycerate through sequential reactions catalyzed by 3-phosphoglycerate dehydrogenase (SerA), 3-phosphoserine aminotransferase (SerC), and SerB. Members of this CD belong to the superfamily of ACT regulatory domains

>PRK06635 aspartate kinase; Reviewed

Probab=96.58  E-value=0.11  Score=46.28  Aligned_cols=110  Identities=16%  Similarity=0.260  Sum_probs=67.2

Q ss_pred             CeEEEEEE-eCCcccHHHHHHHHHHHCCceEEEEEEEecCC-eeEEEEEEeeCCCCCCCCCHHHHHHHHHHHHHhhccCC
Q 028501           13 DATIVQLS-FGDRLGALIDTMNALKDLGLDVAKGTVNTEGS-VKQTKFFITRLDTGRKVEDPDLLERIRLTIINNLLKYH   90 (208)
Q Consensus        13 ~~~~v~v~-~~DrpGLl~~i~~~L~~~gl~I~~a~i~t~~~-~~~d~F~v~~~~~g~~~~~~~~~~~l~~~L~~~l~~~~   90 (208)
                      +...|+|. ..++||.+++++.+|.+.|++|.....+...+ ..--.|.+...          ..+...+.|.+ +..  
T Consensus       261 ~v~~Isv~g~~~~~g~l~~i~~~L~~~~I~i~~is~s~~~~~~~~is~~v~~~----------~~~~a~~~L~~-~~~--  327 (404)
T PRK06635        261 DEAKVTVVGVPDKPGIAAQIFGALAEANINVDMIVQNVSEDGKTDITFTVPRD----------DLEKALELLEE-VKD--  327 (404)
T ss_pred             CeEEEEECCCCCCccHHHHHHHHHHHcCCeEEEEEecCCCCCceeEEEEEcHH----------HHHHHHHHHHH-HHH--
Confidence            34456665 37799999999999999999999544332232 12223444321          22333333433 110  


Q ss_pred             CCchhhhhccccccCCCCCcccCCccccEEEEecCCCCeEEEEEEe---cCcchHHHHHHHHHHhCCccEEEEE
Q 028501           91 PESSEQLAMGEAFGIKAPEKKLDVDIATHIHVKEDGPKRSLLYIET---ADRPGLLVEIMKIIADVNVDVESAE  161 (208)
Q Consensus        91 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~V~~~~~~~~~~~i~v~~---~Dr~GlL~~i~~~l~~~~i~I~~a~  161 (208)
                       ..          +            ...|.+..   +...+.+.|   .++||++++|.++|++.|+||....
T Consensus       328 -~~----------~------------~~~i~~~~---~ia~isvvG~~~~~~~g~~a~i~~~La~~~Ini~~i~  375 (404)
T PRK06635        328 -EI----------G------------AESVTYDD---DIAKVSVVGVGMRSHPGVAAKMFEALAEEGINIQMIS  375 (404)
T ss_pred             -Hc----------C------------cceEEEcC---CeEEEEEECCCCCCCchHHHHHHHHHHHCCCCEEEEE
Confidence             00          0            01122222   336677766   5899999999999999999998864

>cd04905 ACT_CM-PDT C-terminal ACT domain of the bifunctional chorismate mutase-prephenate dehydratase (CM-PDT) enzyme and the prephenate dehydratase (PDT) enzyme

Probab=96.57  E-value=0.056  Score=36.73  Aligned_cols=49  Identities=20%  Similarity=0.349  Sum_probs=37.1

Q ss_pred             EEEEEEeCCcccHHHHHHHHHHHCCceEEEEEEEecCC-eeEEEEEEeeC
Q 028501           15 TIVQLSFGDRLGALIDTMNALKDLGLDVAKGTVNTEGS-VKQTKFFITRL   63 (208)
Q Consensus        15 ~~v~v~~~DrpGLl~~i~~~L~~~gl~I~~a~i~t~~~-~~~d~F~v~~~   63 (208)
                      +.+.+..+|+||.|+++...|.++|+||.+-......+ ...-.|+|...
T Consensus         2 ~sl~~~~~d~~G~L~~il~~f~~~~ini~~i~s~p~~~~~~~~~f~vd~~   51 (80)
T cd04905           2 TSIVFTLPNKPGALYDVLGVFAERGINLTKIESRPSKGGLWEYVFFIDFE   51 (80)
T ss_pred             EEEEEEECCCCCHHHHHHHHHHHCCcCEEEEEEEEcCCCCceEEEEEEEE
Confidence            35667779999999999999999999999776655543 23345777654

The C-terminal ACT domain of the bifunctional chorismate mutase-prephenate dehydratase (CM-PDT) enzyme and the prephenate dehydratase (PDT) enzyme, found in plants, fungi, bacteria, and archaea. The P-protein of E. coli (CM-PDT, PheA) catalyzes the conversion of chorismate to prephenate and then the decarboxylation and dehydration to form phenylpyruvate. These are the first two steps in the biosynthesis of L-Phe and L-Tyr via the shikimate pathway in microorganisms and plants. The E. coli P-protein (CM-PDT) has three domains with an N-terminal domain with chorismate mutase activity, a middle domain with prephenate dehydratase activity, and an ACT regulatory C-terminal domain. The prephenate dehydratase enzyme has a PDT and ACT domain. The ACT domain is essential to bring about the negative allosteric regulation by L-Phe bindi

>PF13710 ACT_5: ACT domain; PDB: 2FGC_A 2PC6_A 2F1F_B

Probab=96.56  E-value=0.016  Score=38.01  Aligned_cols=31  Identities=19%  Similarity=0.352  Sum_probs=26.4

Q ss_pred             CcchHHHHHHHHHHhCCccEEEEEEEecCCe
Q 028501          138 DRPGLLVEIMKIIADVNVDVESAEIDTEGLV  168 (208)
Q Consensus       138 Dr~GlL~~i~~~l~~~~i~I~~a~i~t~~~~  168 (208)
                      |+||.|..|+..|...|+||.++.+....+.
T Consensus         1 n~~GvL~Ri~~vf~rRg~nI~sl~v~~~~~~   31 (63)
T PF13710_consen    1 NQPGVLNRITGVFRRRGFNIESLSVGPTEDP   31 (63)
T ss_dssp             SSTTHHHHHHHHHHTTT-EECEEEEEE-SST
T ss_pred             CCcHHHHHHHHHHhcCCeEEeeEEeeecCCC
Confidence            6899999999999999999999999984443

>cd04902 ACT_3PGDH-xct C-terminal ACT (regulatory) domain of D-3-phosphoglycerate dehydrogenase (3PGDH)

Probab=96.54  E-value=0.0089  Score=39.43  Aligned_cols=44  Identities=18%  Similarity=0.250  Sum_probs=34.4

Q ss_pred             EEEEeCCcccHHHHHHHHHHHCCceEEEEEEEec--CCeeEEEEEE
Q 028501           17 VQLSFGDRLGALIDTMNALKDLGLDVAKGTVNTE--GSVKQTKFFI   60 (208)
Q Consensus        17 v~v~~~DrpGLl~~i~~~L~~~gl~I~~a~i~t~--~~~~~d~F~v   60 (208)
                      +.+..+|+||.++++++.|+++|+||.+......  ++...-+|.+
T Consensus         2 l~v~~~d~~G~l~~i~~~l~~~~inI~~~~~~~~~~~~~~~~~i~v   47 (73)
T cd04902           2 LVVRNTDRPGVIGKVGTILGEAGINIAGMQVGRDEPGGEALMVLSV   47 (73)
T ss_pred             EEEEeCCCCCHHHHHHHHHHHcCcChhheEeeccCCCCEEEEEEEe
Confidence            4678999999999999999999999998876554  2344434444

The C-terminal ACT (regulatory) domain of D-3-phosphoglycerate dehydrogenase (3PGDH), with an extended C-terminal (xct) region from bacteria, archaea, fungi, and plants. 3PGDH is an enzyme that belongs to the D-isomer specific, 2-hydroxyacid dehydrogenase family and catalyzes the oxidation of D-3-phosphoglycerate to 3- phosphohydroxypyruvate, which is the first step in the biosynthesis of L-serine, using NAD+ as the oxidizing agent. In bacteria, 3PGDH is feedback-controlled by the end product L-serine in an allosteric manner. Some 3PGDH enzymes have an additional domain formed by an extended C-terminal region. This additional domain introduces significant asymmetry to the homotetramer. Adjacent ACT (regulatory) domains interact, creating two serine-binding sites, however, this asymmetric arrangement results in the formation of two different and distinct domain interfaces between iden

>cd04882 ACT_Bt0572_2 C-terminal ACT domain of a novel protein composed of just two ACT domains

Probab=96.50  E-value=0.009  Score=38.46  Aligned_cols=35  Identities=17%  Similarity=0.303  Sum_probs=30.8

Q ss_pred             EEEEeCCcccHHHHHHHHHHHCCceEEEEEEEecC
Q 028501           17 VQLSFGDRLGALIDTMNALKDLGLDVAKGTVNTEG   51 (208)
Q Consensus        17 v~v~~~DrpGLl~~i~~~L~~~gl~I~~a~i~t~~   51 (208)
                      +.|.-+|+||-|++++++|.++|+||.+...+...
T Consensus         2 i~v~~~d~pG~L~~i~~~l~~~~~nI~~i~~~~~~   36 (65)
T cd04882           2 LAVEVPDKPGGLHEILQILSEEGINIEYMYAFVEK   36 (65)
T ss_pred             EEEEeCCCCcHHHHHHHHHHHCCCChhheEEEccC
Confidence            67888999999999999999999999977765554

Included in this CD is the C-terminal ACT domain of a novel protein composed of just two ACT domains, as seen in the yet uncharacterized structure (pdb 2F06) of the Bt0572 protein from Bacteroides thetaiotaomicron and related proteins. Members of this CD belong to the superfamily of ACT regulatory domains.

>PF13710 ACT_5: ACT domain; PDB: 2FGC_A 2PC6_A 2F1F_B

Probab=96.50  E-value=0.012  Score=38.57  Aligned_cols=56  Identities=13%  Similarity=0.207  Sum_probs=37.3

Q ss_pred             CcccHHHHHHHHHHHCCceEEEEEEEecCCeeEEEEEEeeCCCCCCCCCHHHHHHHHHHHHH
Q 028501           23 DRLGALIDTMNALKDLGLDVAKGTVNTEGSVKQTKFFITRLDTGRKVEDPDLLERIRLTIIN   84 (208)
Q Consensus        23 DrpGLl~~i~~~L~~~gl~I~~a~i~t~~~~~~d~F~v~~~~~g~~~~~~~~~~~l~~~L~~   84 (208)
                      |+||.|.+|+++|...|+||.+-.+....+.-.-.+.++-.  |..    ...+.|.+.|++
T Consensus         1 n~~GvL~Ri~~vf~rRg~nI~sl~v~~~~~~~~~riti~v~--~~~----~~i~~l~~Ql~K   56 (63)
T PF13710_consen    1 NQPGVLNRITGVFRRRGFNIESLSVGPTEDPGISRITIVVS--GDD----REIEQLVKQLEK   56 (63)
T ss_dssp             SSTTHHHHHHHHHHTTT-EECEEEEEE-SSTTEEEEEEEEE--S-C----CHHHHHHHHHHC
T ss_pred             CCcHHHHHHHHHHhcCCeEEeeEEeeecCCCCEEEEEEEEe--eCc----hhHHHHHHHHhc
Confidence            78999999999999999999999998855532222333332  321    345666666665

>cd04883 ACT_AcuB C-terminal ACT domain of the Bacillus subtilis acetoin utilization protein, AcuB

Probab=96.50  E-value=0.032  Score=36.74  Aligned_cols=36  Identities=25%  Similarity=0.398  Sum_probs=31.6

Q ss_pred             EEEEEEeCCcccHHHHHHHHHHHCCceEEEEEEEec
Q 028501           15 TIVQLSFGDRLGALIDTMNALKDLGLDVAKGTVNTE   50 (208)
Q Consensus        15 ~~v~v~~~DrpGLl~~i~~~L~~~gl~I~~a~i~t~   50 (208)
                      +.+.+..+|+||.+..+++.|.++|+||.+....-.
T Consensus         2 ~~~~v~~~d~pG~l~~i~~~l~~~~inI~~i~~~~~   37 (72)
T cd04883           2 SQIEVRVPDRPGQLADIAAIFKDRGVNIVSVLVYPS   37 (72)
T ss_pred             cEEEEEECCCCCHHHHHHHHHHHcCCCEEEEEEecc
Confidence            578899999999999999999999999997765443

This CD includes the C-terminal ACT domain of the Bacillus subtilis acetoin utilization protein, AcuB. AcuB is putatively involved in the anaerobic catabolism of acetoin, and related proteins. Studies report the induction of AcuB by nitrate respiration and also by fermentation. Since acetoin can be secreted and later serve as a source of carbon, it has been proposed that, during anaerobic growth when other carbon sources are exhausted, the induction of the AcuB protein results in acetoin catabolism. AcuB-like proteins have two N-terminal tandem CBS domains and a single C-terminal ACT domain. Members of this CD belong to the superfamily of ACT regulatory domains.

>TIGR00719 sda_beta L-serine dehydratase, iron-sulfur-dependent, beta subunit

Probab=96.48  E-value=0.023  Score=46.17  Aligned_cols=48  Identities=15%  Similarity=0.379  Sum_probs=38.6

Q ss_pred             CeEEEEEEecCcchHHHHHHHHHHhCCccEEEEEEEecCC--eEEEEEEE
Q 028501          128 KRSLLYIETADRPGLLVEIMKIIADVNVDVESAEIDTEGL--VAKDKFHV  175 (208)
Q Consensus       128 ~~~~i~v~~~Dr~GlL~~i~~~l~~~~i~I~~a~i~t~~~--~~~~~f~v  175 (208)
                      +...+-+...|+||.+..|+..|.++|+||..+++.....  .+..+..+
T Consensus       147 ~g~~L~~~~~D~PG~Ig~vg~~Lg~~~iNIa~m~v~r~~~g~~Ai~vl~v  196 (208)
T TIGR00719       147 EHPAILLEHNDKFGTIAGVANLLAGFEINIEHLETAKKDIGNIALLTIEI  196 (208)
T ss_pred             CccEEEEEeCCCCChHHHHHHHHHhCCccEEEEEEEecCCCCEEEEEEEe
Confidence            4567777889999999999999999999999999987653  34444444

This family of enzymes is not homologous to the pyridoxal phosphate-dependent threonine deaminases and eukaryotic serine deaminases.

>PRK07334 threonine dehydratase; Provisional

Probab=96.46  E-value=0.02  Score=51.02  Aligned_cols=37  Identities=19%  Similarity=0.379  Sum_probs=34.6

Q ss_pred             eEEEEEEecCcchHHHHHHHHHHhCCccEEEEEEEec
Q 028501          129 RSLLYIETADRPGLLVEIMKIIADVNVDVESAEIDTE  165 (208)
Q Consensus       129 ~~~i~v~~~Dr~GlL~~i~~~l~~~~i~I~~a~i~t~  165 (208)
                      .+.|.|.+.||||+|++|++.|++.++||.+++..+.
T Consensus       326 ~v~l~I~~~dr~GlL~dI~~~is~~~~nI~~v~~~~~  362 (403)
T PRK07334        326 LARLRVDIRDRPGALARVTALIGEAGANIIEVSHQRL  362 (403)
T ss_pred             EEEEEEEeCCCCCHHHHHHHHHhhCCCceEEEEEEec
Confidence            4899999999999999999999999999999998764

>COG0077 PheA Prephenate dehydratase [Amino acid transport and metabolism]

Probab=96.40  E-value=0.02  Score=48.45  Aligned_cols=55  Identities=15%  Similarity=0.275  Sum_probs=47.1

Q ss_pred             eEEEEEEecCcchHHHHHHHHHHhCCccEEEEEEEecCCeEEE-EEEEEeCCCCCC
Q 028501          129 RSLLYIETADRPGLLVEIMKIIADVNVDVESAEIDTEGLVAKD-KFHVSYGGAALN  183 (208)
Q Consensus       129 ~~~i~v~~~Dr~GlL~~i~~~l~~~~i~I~~a~i~t~~~~~~~-~f~v~~~g~~~~  183 (208)
                      .|.+-+...|+||-|+++...|+.+|||+.++.+-..+..-++ +|+|+-+|+.-+
T Consensus       194 kTsl~f~~~n~PGaL~~~L~~Fa~~gINlTkIESRP~k~~~~~Y~F~iD~eg~~~~  249 (279)
T COG0077         194 KTSLIFSVPNKPGALYKALGVFAKRGINLTKIESRPLKTGLGEYLFFIDIEGHIDD  249 (279)
T ss_pred             eEEEEEEcCCCCchHHHHHHHHHHcCcceeeEeecccCCCCeeEEEEEEEecCcCc
Confidence            6788888889999999999999999999999999988877665 677776777644

>cd04901 ACT_3PGDH C-terminal ACT (regulatory) domain of D-3-Phosphoglycerate Dehydrogenase (3PGDH) found in fungi and bacteria

Probab=96.38  E-value=0.003  Score=41.40  Aligned_cols=39  Identities=15%  Similarity=0.198  Sum_probs=31.8

Q ss_pred             EEEEeCCcccHHHHHHHHHHHCCceEEEEEEEecCCeeE
Q 028501           17 VQLSFGDRLGALIDTMNALKDLGLDVAKGTVNTEGSVKQ   55 (208)
Q Consensus        17 v~v~~~DrpGLl~~i~~~L~~~gl~I~~a~i~t~~~~~~   55 (208)
                      +.+.+.|+||++++++.+|++.|+||......+.++.+.
T Consensus         2 ~~~~~~d~~g~l~~i~~~l~~~~~nI~~~~~~~~~~~a~   40 (69)
T cd04901           2 ILHIHKNVPGVLGQINTILAEHNINIAAQYLQTRGEIGY   40 (69)
T ss_pred             EEEEecCCCcHHHHHHHHHHHcCCCHHHHhccCCCCEEE
Confidence            567899999999999999999999998776554444443

The C-terminal ACT (regulatory) domain of D-3-Phosphoglycerate Dehydrogenase (3PGDH) found in fungi and bacteria. 3PGDH is an enzyme that belongs to the D-isomer specific, 2-hydroxyacid dehydrogenase family and catalyzes the oxidation of D-3-phosphoglycerate to 3- phosphohydroxypyruvate, which is the first step in the biosynthesis of L-serine, using NAD+ as the oxidizing agent. In Escherichia coli, the SerA 3PGDH is feedback-controlled by the end product L-serine in an allosteric manner. In the homotetrameric enzyme, the interface at adjacent ACT (regulatory) domains couples to create an extended beta-sheet. Each regulatory interface forms two serine-binding sites. The mechanism by which serine transmits inhibition to the active site is postulated to involve the tethering of the regulatory domains together to create a rigid quaternary structure with a solvent-

>cd04930 ACT_TH ACT domain of the nonheme iron-dependent aromatic amino acid hydroxylase, tyrosine hydroxylases (TH)

Probab=96.30  E-value=0.023  Score=41.88  Aligned_cols=53  Identities=13%  Similarity=0.134  Sum_probs=43.9

Q ss_pred             eEEEEEEecCcchHHHHHHHHHHhCCccEEEEEEEecCCeEEE-EEEEEeCCCC
Q 028501          129 RSLLYIETADRPGLLVEIMKIIADVNVDVESAEIDTEGLVAKD-KFHVSYGGAA  181 (208)
Q Consensus       129 ~~~i~v~~~Dr~GlL~~i~~~l~~~~i~I~~a~i~t~~~~~~~-~f~v~~~g~~  181 (208)
                      .+.+-+...|+||-|+++...|+.+|+|+.++..-+.++..+. .|+|+-+|..
T Consensus        41 ktSlifsl~~~pGsL~~iL~~Fa~~gINLt~IESRP~~~~~~eY~FfIdieg~~   94 (115)
T cd04930          41 KATLLFSLKEGFSSLSRILKVFETFEAKIHHLESRPSRKEGGDLEVLVRCEVHR   94 (115)
T ss_pred             cEEEEEEeCCCCcHHHHHHHHHHHCCCCEEEEECCcCCCCCceEEEEEEEEeCH
Confidence            4677777799999999999999999999999999887666444 6888756654

ACT domain of the nonheme iron-dependent aromatic amino acid hydroxylase, tyrosine hydroxylases (TH). TH catalyses the hydroxylation of L-Tyr to 3,4-dihydroxyphenylalanine, the rate limiting step in the biosynthesis of catecholamines (dopamine, noradrenaline and adrenaline), functioning as hormones and neurotransmitters. The enzyme is not regulated by its amino acid substrate, but instead by phosphorylation at several serine residues located N-terminal of the ACT domain, and by feedback inhibition by catecholamines at the active site. Members of this CD belong to the superfamily of ACT regulatory domains.

>PRK07334 threonine dehydratase; Provisional

Probab=96.22  E-value=0.049  Score=48.58  Aligned_cols=63  Identities=14%  Similarity=0.217  Sum_probs=47.1

Q ss_pred             EEEEEEeCCcccHHHHHHHHHHHCCceEEEEEEEec----CCe-eEEEEEEeeCCCCCCCCCHHHHHHHHHHHHH
Q 028501           15 TIVQLSFGDRLGALIDTMNALKDLGLDVAKGTVNTE----GSV-KQTKFFITRLDTGRKVEDPDLLERIRLTIIN   84 (208)
Q Consensus        15 ~~v~v~~~DrpGLl~~i~~~L~~~gl~I~~a~i~t~----~~~-~~d~F~v~~~~~g~~~~~~~~~~~l~~~L~~   84 (208)
                      +.|.|.+.||+|+|++|+.+|++.++||.+....+.    .++ +.-.|.+.-.       +.+.++++...|++
T Consensus       327 v~l~I~~~dr~GlL~dI~~~is~~~~nI~~v~~~~~~~~~~~~~~~i~l~i~V~-------d~~~L~~vi~~Lr~  394 (403)
T PRK07334        327 ARLRVDIRDRPGALARVTALIGEAGANIIEVSHQRLFTDLPAKGAELELVIETR-------DAAHLQEVIAALRA  394 (403)
T ss_pred             EEEEEEeCCCCCHHHHHHHHHhhCCCceEEEEEEecccCCCCCeEEEEEEEEeC-------CHHHHHHHHHHHHH
Confidence            689999999999999999999999999999988765    333 3333444422       23566777777665

>PRK00227 glnD PII uridylyl-transferase; Provisional

Probab=96.19  E-value=0.028  Score=53.51  Aligned_cols=71  Identities=20%  Similarity=0.225  Sum_probs=59.6

Q ss_pred             EEEEEEe-cCcchHHHHHHHHHHhCCccEEEEEEEecCCeEEEEEEEEe-CCCCCChH-HHHHHHHHHHHHcCCC
Q 028501          130 SLLYIET-ADRPGLLVEIMKIIADVNVDVESAEIDTEGLVAKDKFHVSY-GGAALNSS-LSQVLVNCLRYYLRRP  201 (208)
Q Consensus       130 ~~i~v~~-~Dr~GlL~~i~~~l~~~~i~I~~a~i~t~~~~~~~~f~v~~-~g~~~~~~-~~~~l~~~l~~~l~~~  201 (208)
                      ..++|.. +|++|+|..++.+|+.+|.+|.+|++.+ ++.+...|.|.. .|.+.... .+++++.++...++-+
T Consensus       547 ~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~a~~~~-~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~  620 (693)
T PRK00227        547 GFFTVIWHGDYPRELVRVLALIAAKGWNILSARMVA-NGPWSAEFDVRANGPQDFDPQEFLQAYKSGVYSELPDP  620 (693)
T ss_pred             CeEEEEecCCcccHHHHHHHHHHhcCceeeEeEEec-CCceEEEEEEecCCCCCCChHHHHHHHHHhhcCCCCcc
Confidence            4677777 9999999999999999999999999999 778889999997 67776654 6788888877666543

>PRK11790 D-3-phosphoglycerate dehydrogenase; Provisional

Probab=96.09  E-value=0.012  Score=52.65  Aligned_cols=61  Identities=20%  Similarity=0.290  Sum_probs=48.7

Q ss_pred             CeEEEEEEecCcchHHHHHHHHHHhCCccEEEEEEEecCCeEEEEEEEEeCCCCCChHHHHHHH
Q 028501          128 KRSLLYIETADRPGLLVEIMKIIADVNVDVESAEIDTEGLVAKDKFHVSYGGAALNSSLSQVLV  191 (208)
Q Consensus       128 ~~~~i~v~~~Dr~GlL~~i~~~l~~~~i~I~~a~i~t~~~~~~~~f~v~~~g~~~~~~~~~~l~  191 (208)
                      ....|-+.-.|+||.++.|+.+|+++|+||.+.+..+.++.+..+|.++.   +++++..++|+
T Consensus       337 ~~~rlii~h~d~pG~ia~it~~l~~~~iNI~~m~~~~~~~~A~~iie~D~---~~~~~~~~~i~  397 (409)
T PRK11790        337 GGHRLLHIHENRPGVLAAINQIFAEQGINIAAQYLQTDGEIGYVVIDVDA---DYAEEALDALK  397 (409)
T ss_pred             CCceEEEEeCCCCCHHHHHHHHHHhcCCCHHHheeccCCCEEEEEEEeCC---CCcHHHHHHHH
Confidence            45778889999999999999999999999999999988877777776643   43444555554

>TIGR00656 asp_kin_monofn aspartate kinase, monofunctional class

Probab=96.05  E-value=0.56  Score=41.64  Aligned_cols=109  Identities=16%  Similarity=0.184  Sum_probs=67.6

Q ss_pred             CCeEEEEEE---eCCcccHHHHHHHHHHHCCceEEEEEEEecCCeeEEEEEEeeCCCCCCCCCHHHHHHHHHHHHHhhcc
Q 028501           12 SDATIVQLS---FGDRLGALIDTMNALKDLGLDVAKGTVNTEGSVKQTKFFITRLDTGRKVEDPDLLERIRLTIINNLLK   88 (208)
Q Consensus        12 ~~~~~v~v~---~~DrpGLl~~i~~~L~~~gl~I~~a~i~t~~~~~~d~F~v~~~~~g~~~~~~~~~~~l~~~L~~~l~~   88 (208)
                      ++...|+|.   ..+++|.++++..+|.++|++|...........+  .|.|...          ..++..+.|.+.+..
T Consensus       258 ~~va~vsv~g~~~~~~~g~~~~if~~L~~~~I~i~~i~~~~s~~~I--s~~V~~~----------d~~~a~~~L~~~~~~  325 (401)
T TIGR00656       258 KNVTRVTVHGLGMLGKRGFLARIFGALAERNINVDLISQTPSETSI--SLTVDET----------DADEAVRALKDQSGA  325 (401)
T ss_pred             CCEEEEEEecCCCCCCccHHHHHHHHHHHcCCcEEEEEcCCCCceE--EEEEeHH----------HHHHHHHHHHHHHHh
Confidence            345678888   4788999999999999999999833221111122  3555321          223333444442211


Q ss_pred             CCCCchhhhhccccccCCCCCcccCCccccEEEEecCCCCeEEEEEEec---CcchHHHHHHHHHHhCCccEEEEE
Q 028501           89 YHPESSEQLAMGEAFGIKAPEKKLDVDIATHIHVKEDGPKRSLLYIETA---DRPGLLVEIMKIIADVNVDVESAE  161 (208)
Q Consensus        89 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~V~~~~~~~~~~~i~v~~~---Dr~GlL~~i~~~l~~~~i~I~~a~  161 (208)
                      .              .            ...|.++.   +...|.+.|.   ++||+++++.++|++.|+||....
T Consensus       326 ~--------------~------------~~~i~~~~---~~a~IsvVG~~~~~~~g~~a~i~~~L~~~gIni~~i~  372 (401)
T TIGR00656       326 A--------------G------------LDRVEVEE---GLAKVSIVGAGMVGAPGVASEIFSALEEKNINILMIG  372 (401)
T ss_pred             c--------------C------------CceEEEeC---CeEEEEEECCCcccCccHHHHHHHHHHHCCCcEEEEE
Confidence            0              0            01122222   3466777775   789999999999999999998543

The Lys-sensitive enzyme of Bacillus subtilis resembles the E. coli form but is an alpha 2/beta 2 heterotetramer, where the beta subunit is translated from an in-phase alternative initiator at Met-246. The protein slr0657 from Synechocystis PCC6803 is extended by a duplication of the C-terminal region corresponding to the beta chain. Incorporation of a second copy of the C-terminal domain may be quite common in this subgroup of aspartokinases.

>PRK10622 pheA bifunctional chorismate mutase/prephenate dehydratase; Provisional

Probab=95.98  E-value=0.045  Score=48.66  Aligned_cols=57  Identities=16%  Similarity=0.190  Sum_probs=46.4

Q ss_pred             eEEEEEEecCcchHHHHHHHHHHhCCccEEEEEEEecCCeEEE-EEEEEeCCCCCChH
Q 028501          129 RSLLYIETADRPGLLVEIMKIIADVNVDVESAEIDTEGLVAKD-KFHVSYGGAALNSS  185 (208)
Q Consensus       129 ~~~i~v~~~Dr~GlL~~i~~~l~~~~i~I~~a~i~t~~~~~~~-~f~v~~~g~~~~~~  185 (208)
                      .+.+-+...|+||.|+++-..|+.+|||+.++..-..+++-+. .|+++-+|..-++.
T Consensus       297 ktsl~~~~~~~pGaL~~~L~~Fa~~giNLtkIeSRP~~~~~~~Y~Ffid~eg~~~d~~  354 (386)
T PRK10622        297 KTTLLMATGQQAGALVEALLVLRNHNLIMTKLESRPIHGNPWEEMFYLDVQANLRSAE  354 (386)
T ss_pred             cEEEEEEcCCCCcHHHHHHHHHHHcCCCeeEEEeeecCCCCceEEEEEEEeCCCCCHH
Confidence            5666677789999999999999999999999999988777555 78887677653333

>cd04885 ACT_ThrD-I Tandem C-terminal ACT domains of threonine dehydratase I (ThrD-I; L-threonine hydrolyase)

Probab=95.91  E-value=0.064  Score=35.33  Aligned_cols=61  Identities=15%  Similarity=0.215  Sum_probs=40.6

Q ss_pred             EEEEeCCcccHHHHHHHHHHHCCceEEEEEEEecCCeeEEEEEEeeCCCCCCCCCHHHHHHHHHHHHH
Q 028501           17 VQLSFGDRLGALIDTMNALKDLGLDVAKGTVNTEGSVKQTKFFITRLDTGRKVEDPDLLERIRLTIIN   84 (208)
Q Consensus        17 v~v~~~DrpGLl~~i~~~L~~~gl~I~~a~i~t~~~~~~d~F~v~~~~~g~~~~~~~~~~~l~~~L~~   84 (208)
                      +.|.-+||||-|..++.+++. |.||.+.+-...+.....+++....      .+++..+.+.+.|++
T Consensus         1 ~~v~ipdkPG~l~~~~~~i~~-~~nI~~~~~~~~~~~~~~v~v~ie~------~~~~~~~~i~~~L~~   61 (68)
T cd04885           1 FAVTFPERPGALKKFLELLGP-PRNITEFHYRNQGGDEARVLVGIQV------PDREDLAELKERLEA   61 (68)
T ss_pred             CEEECCCCCCHHHHHHHHhCC-CCcEEEEEEEcCCCCceEEEEEEEe------CCHHHHHHHHHHHHH
Confidence            357789999999999999999 9999977665443322333333222      123566667766655

This CD includes each of two tandem C-terminal ACT domains of threonine dehydratase I (ThrD-I; L-threonine hydrolyase) which catalyzes the committed step in branched chain amino acid biosynthesis in plants and microorganisms, the pyridoxal 5'-phosphate (PLP)-dependent dehydration/deamination of L-threonine (or L-serine) to 2-ketobutyrate (or pyruvate). ThrD-I is a cooperative, feedback-regulated (isoleucine and valine) allosteric enzyme that forms a tetramer and contains four pyridoxal phosphate moieties. Members of this CD belong to the superfamily of ACT regulatory domains.

>PRK10872 relA (p)ppGpp synthetase I/GTP pyrophosphokinase; Provisional

Probab=95.81  E-value=0.1  Score=50.08  Aligned_cols=74  Identities=16%  Similarity=0.215  Sum_probs=51.9

Q ss_pred             EEEeecCCCC-eEEEEEEeCCcccHHHHHHHHHHHCCceEEEEEEEecC-C-eeEEEEEEeeCCCCCCCCCHHHHHHHHH
Q 028501            4 VLIDQDSNSD-ATIVQLSFGDRLGALIDTMNALKDLGLDVAKGTVNTEG-S-VKQTKFFITRLDTGRKVEDPDLLERIRL   80 (208)
Q Consensus         4 V~~~~~~~~~-~~~v~v~~~DrpGLl~~i~~~L~~~gl~I~~a~i~t~~-~-~~~d~F~v~~~~~g~~~~~~~~~~~l~~   80 (208)
                      |.|+...... ...|.|.+.||+|+|++|+.+++..++||....+.+.. + .+.-.|.|.-.       +...+.++..
T Consensus       655 V~W~~~~~~~~~v~I~I~~~Dr~GlL~dIt~~is~~~~nI~~v~~~~~~~~~~~~~~~~ieV~-------~~~~L~~l~~  727 (743)
T PRK10872        655 AVWGESYSSGYSLVVRVTANDRSGLLRDITTILANEKVNVLGVASRSDTKQQLATIDMTIEIY-------NLQVLGRVLG  727 (743)
T ss_pred             eEecCCCCceeEEEEEEEEcCCCCHHHHHHHHHHHCCCCeEEEEeEEcCCCCEEEEEEEEEEC-------CHHHHHHHHH
Confidence            4565432222 34789999999999999999999999999999987764 3 34444555433       2356666666


Q ss_pred             HHHH
Q 028501           81 TIIN   84 (208)
Q Consensus        81 ~L~~   84 (208)
                      .|+.
T Consensus       728 ~L~~  731 (743)
T PRK10872        728 KLNQ  731 (743)
T ss_pred             HHhc
Confidence            6654

>PRK10872 relA (p)ppGpp synthetase I/GTP pyrophosphokinase; Provisional

Probab=95.78  E-value=0.041  Score=52.71  Aligned_cols=48  Identities=23%  Similarity=0.372  Sum_probs=40.0

Q ss_pred             eEEEEEEecCcchHHHHHHHHHHhCCccEEEEEEEecC--CeEEEEEEEE
Q 028501          129 RSLLYIETADRPGLLVEIMKIIADVNVDVESAEIDTEG--LVAKDKFHVS  176 (208)
Q Consensus       129 ~~~i~v~~~Dr~GlL~~i~~~l~~~~i~I~~a~i~t~~--~~~~~~f~v~  176 (208)
                      .+.|.|.+.||+|+|++|+.+|++.++||.++++.+..  +.+...|.+.
T Consensus       666 ~v~I~I~~~Dr~GlL~dIt~~is~~~~nI~~v~~~~~~~~~~~~~~~~ie  715 (743)
T PRK10872        666 SLVVRVTANDRSGLLRDITTILANEKVNVLGVASRSDTKQQLATIDMTIE  715 (743)
T ss_pred             EEEEEEEEcCCCCHHHHHHHHHHHCCCCeEEEEeEEcCCCCEEEEEEEEE
Confidence            57899999999999999999999999999999987753  4444455553

>PRK11092 bifunctional (p)ppGpp synthetase II/ guanosine-3',5'-bis pyrophosphate 3'-pyrophosphohydrolase; Provisional

Probab=95.72  E-value=0.07  Score=50.95  Aligned_cols=48  Identities=13%  Similarity=0.196  Sum_probs=40.0

Q ss_pred             eEEEEEEecCcchHHHHHHHHHHhCCccEEEEEEEecCC-eEEEEEEEE
Q 028501          129 RSLLYIETADRPGLLVEIMKIIADVNVDVESAEIDTEGL-VAKDKFHVS  176 (208)
Q Consensus       129 ~~~i~v~~~Dr~GlL~~i~~~l~~~~i~I~~a~i~t~~~-~~~~~f~v~  176 (208)
                      .+.|.|.+.||+|+|++|+.+|++.++||.++++.+..+ .+...|.+.
T Consensus       626 ~v~i~I~~~dr~GlL~dI~~~i~~~~~nI~~v~~~~~~~~~~~~~~~ie  674 (702)
T PRK11092        626 IAEIKVEMFNHQGALANLTAAINTTGSNIQSLNTEEKDGRVYSAFIRLT  674 (702)
T ss_pred             EEEEEEEEeCCCCHHHHHHHHHHHCCCCeEEEEEEEcCCCEEEEEEEEE
Confidence            578999999999999999999999999999999877653 344445553

>TIGR00691 spoT_relA (p)ppGpp synthetase, RelA/SpoT family

Probab=95.60  E-value=0.083  Score=50.35  Aligned_cols=47  Identities=26%  Similarity=0.299  Sum_probs=39.2

Q ss_pred             eEEEEEEecCcchHHHHHHHHHHhCCccEEEEEEEecC-CeEEEEEEE
Q 028501          129 RSLLYIETADRPGLLVEIMKIIADVNVDVESAEIDTEG-LVAKDKFHV  175 (208)
Q Consensus       129 ~~~i~v~~~Dr~GlL~~i~~~l~~~~i~I~~a~i~t~~-~~~~~~f~v  175 (208)
                      .+.|.|.+.||+|+|++|+.+|+..++||.++++.+.. +.....|.+
T Consensus       610 ~v~I~I~~~dr~GlLadI~~~ia~~~~nI~~v~~~~~~~~~~~~~~~i  657 (683)
T TIGR00691       610 IVDINIEAVDRKGVLSDLTTAISENDSNIVSISTKTYGKREAILNITV  657 (683)
T ss_pred             EEEEEEEEecCCCHHHHHHHHHHHCCCCeEEEEeEEcCCCEEEEEEEE
Confidence            67999999999999999999999999999999998764 333334444

(p)ppGpp is a regulatory metabolite of the stringent response, but appears also to be involved in antibiotic biosynthesis in some species.

>PRK06291 aspartate kinase; Provisional

Probab=95.47  E-value=1.5  Score=39.95  Aligned_cols=112  Identities=12%  Similarity=0.187  Sum_probs=70.4

Q ss_pred             CCeEEEEEEeC---CcccHHHHHHHHHHHCCceEEEEEEEecCCeeEEEEEEeeCCCCCCCCCHHHHHHHHHHHHHhhcc
Q 028501           12 SDATIVQLSFG---DRLGALIDTMNALKDLGLDVAKGTVNTEGSVKQTKFFITRLDTGRKVEDPDLLERIRLTIINNLLK   88 (208)
Q Consensus        12 ~~~~~v~v~~~---DrpGLl~~i~~~L~~~gl~I~~a~i~t~~~~~~d~F~v~~~~~g~~~~~~~~~~~l~~~L~~~l~~   88 (208)
                      ++...|+|.+.   +.+|+++++.++|.++|++|.-....+....+  .|.|...          ..++..+.|.+.+..
T Consensus       319 ~~valIsI~g~~m~~~~g~~arvf~~L~~~gI~V~mIsq~sse~sI--sf~V~~~----------d~~~av~~L~~~~~~  386 (465)
T PRK06291        319 KNVALINISGAGMVGVPGTAARIFSALAEEGVNVIMISQGSSESNI--SLVVDEA----------DLEKALKALRREFGE  386 (465)
T ss_pred             CCEEEEEEeCCCCCCCccHHHHHHHHHHHCCCcEEEEEecCCCceE--EEEEeHH----------HHHHHHHHHHHHHHH
Confidence            34567888764   68999999999999999999854333322222  2555422          122333344443321


Q ss_pred             CCCCchhhhhccccccCCCCCcccCCccccEEEEecCCCCeEEEEEEec---CcchHHHHHHHHHHhCCccEEEEEEEe
Q 028501           89 YHPESSEQLAMGEAFGIKAPEKKLDVDIATHIHVKEDGPKRSLLYIETA---DRPGLLVEIMKIIADVNVDVESAEIDT  164 (208)
Q Consensus        89 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~V~~~~~~~~~~~i~v~~~---Dr~GlL~~i~~~l~~~~i~I~~a~i~t  164 (208)
                      .                .          ...|.+.+   +...|.+.|.   +++|+++++..+|++.|++|......+
T Consensus       387 ~----------------~----------~~~i~~~~---~~a~IsvvG~gm~~~~gv~~rif~aL~~~~I~v~~isqgs  436 (465)
T PRK06291        387 G----------------L----------VRDVTFDK---DVCVVAVVGAGMAGTPGVAGRIFSALGESGINIKMISQGS  436 (465)
T ss_pred             h----------------c----------CcceEEeC---CEEEEEEEcCCccCCcChHHHHHHHHHHCCCCEEEEEecc
Confidence            0                0          00122222   3367888776   789999999999999999998665443

>PRK08210 aspartate kinase I; Reviewed

Probab=95.41  E-value=0.98  Score=40.20  Aligned_cols=100  Identities=17%  Similarity=0.249  Sum_probs=64.4

Q ss_pred             CCeEEEEEEeCCc-ccHHHHHHHHHHHCCceEEEEEEEecCCeeEEEEEEeeCCCCCCCCCHHHHHHHHHHHHHhhccCC
Q 028501           12 SDATIVQLSFGDR-LGALIDTMNALKDLGLDVAKGTVNTEGSVKQTKFFITRLDTGRKVEDPDLLERIRLTIINNLLKYH   90 (208)
Q Consensus        12 ~~~~~v~v~~~Dr-pGLl~~i~~~L~~~gl~I~~a~i~t~~~~~~d~F~v~~~~~g~~~~~~~~~~~l~~~L~~~l~~~~   90 (208)
                      ++...|+|...+. ||.+++|+..|.++|++|.....+  .+.+  .|.+..          +..++..+.|.+ +.   
T Consensus       269 ~~i~~isv~~~~~~~g~la~If~~L~~~~I~i~~i~~~--~~~i--s~~v~~----------~~~~~a~~~l~~-~~---  330 (403)
T PRK08210        269 SNVTQIKVKAKENAYDLQQEVFKALAEAGISVDFINIF--PTEV--VFTVSD----------EDSEKAKEILEN-LG---  330 (403)
T ss_pred             CCcEEEEEecCCCcchHHHHHHHHHHHcCCeEEEEEec--CceE--EEEEcH----------HHHHHHHHHHHH-hC---
Confidence            3556777876554 999999999999999999965333  2222  254432          122333333333 10   


Q ss_pred             CCchhhhhccccccCCCCCcccCCccccEEEEecCCCCeEEEEEEec---CcchHHHHHHHHHHhCCccEEE
Q 028501           91 PESSEQLAMGEAFGIKAPEKKLDVDIATHIHVKEDGPKRSLLYIETA---DRPGLLVEIMKIIADVNVDVES  159 (208)
Q Consensus        91 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~V~~~~~~~~~~~i~v~~~---Dr~GlL~~i~~~l~~~~i~I~~  159 (208)
                      .                           .+.+..   +...|.|.|.   ++||+++++..+|++.|++|..
T Consensus       331 ~---------------------------~v~~~~---~~a~isvvG~~~~~~~g~~~~i~~aL~~~~I~i~~  372 (403)
T PRK08210        331 L---------------------------KPSVRE---NCAKVSIVGAGMAGVPGVMAKIVTALSEEGIEILQ  372 (403)
T ss_pred             C---------------------------cEEEeC---CcEEEEEEcCCcCCCccHHHHHHHHHHhCCCCEEE
Confidence            0                           122222   2356777665   7899999999999999999974

>cd04880 ACT_AAAH-PDT-like ACT domain of the nonheme iron-dependent, aromatic amino acid hydroxylases (AAAH)

Probab=95.30  E-value=0.37  Score=32.06  Aligned_cols=47  Identities=17%  Similarity=0.347  Sum_probs=32.5

Q ss_pred             EEEEeCCcccHHHHHHHHHHHCCceEEEEEEEecCC-eeEEEEEEeeC
Q 028501           17 VQLSFGDRLGALIDTMNALKDLGLDVAKGTVNTEGS-VKQTKFFITRL   63 (208)
Q Consensus        17 v~v~~~DrpGLl~~i~~~L~~~gl~I~~a~i~t~~~-~~~d~F~v~~~   63 (208)
                      +.+..+|+||-|+.+...|+++|+|+.+-.-.-..+ ..--.|+|.-.
T Consensus         2 l~~~l~d~pG~L~~vL~~f~~~~vni~~I~Srp~~~~~~~~~f~id~~   49 (75)
T cd04880           2 LVFSLKNKPGALAKALKVFAERGINLTKIESRPSRKGLWEYEFFVDFE   49 (75)
T ss_pred             EEEEeCCcCCHHHHHHHHHHHCCCCEEEEEeeecCCCCceEEEEEEEE
Confidence            345558999999999999999999999553333222 22234666544

ACT domain of the nonheme iron-dependent, aromatic amino acid hydroxylases (AAAH): Phenylalanine hydroxylases (PAH), tyrosine hydroxylases (TH) and tryptophan hydroxylases (TPH), both peripheral (TPH1) and neuronal (TPH2) enzymes. This family of enzymes shares a common catalytic mechanism, in which dioxygen is used by an active site containing a single, reduced iron atom to hydroxylate an unactivated aromatic substrate, concomitant with a two-electron oxidation of tetrahydropterin (BH4) cofactor to its quinonoid dihydropterin form. Eukaryotic AAAHs have an N-terminal ACT (regulatory) domain, a middle catalytic domain and a C-terminal domain which is responsible for the oligomeric state of the enzyme forming a domain-swapped tetrameric coiled-coil. The PAH, TH, and TPH enzymes contain highly conserved catalytic domains but distinct N-terminal ACT domains and differ in their mech

>cd04931 ACT_PAH ACT domain of the nonheme iron-dependent aromatic amino acid hydroxylase, phenylalanine hydroxylases (PAH)

Probab=95.23  E-value=0.6  Score=32.78  Aligned_cols=55  Identities=15%  Similarity=0.352  Sum_probs=39.7

Q ss_pred             eecCCCCeEEEEEEeCCcccHHHHHHHHHHHCCceEEEEEEEecCC--e-eEEEEEEeeC
Q 028501            7 DQDSNSDATIVQLSFGDRLGALIDTMNALKDLGLDVAKGTVNTEGS--V-KQTKFFITRL   63 (208)
Q Consensus         7 ~~~~~~~~~~v~v~~~DrpGLl~~i~~~L~~~gl~I~~a~i~t~~~--~-~~d~F~v~~~   63 (208)
                      .....++.+.|.+..+|+||-|+++...|+.+|+|+.  +|.+.+.  . .--.|+|.-.
T Consensus         7 ~~~~~~~ktslif~l~~~pGsL~~vL~~Fa~~~INLt--~IeSRP~~~~~~~Y~FfVDie   64 (90)
T cd04931           7 ENSNKNGVISLIFSLKEEVGALAKVLRLFEEKDINLT--HIESRPSRLNKDEYEFFINLD   64 (90)
T ss_pred             cccCCCCcEEEEEEcCCCCcHHHHHHHHHHHCCCCEE--EEEeccCCCCCceEEEEEEEE
Confidence            3344445567777779999999999999999999999  5655443  1 2234777654

ACT domain of the nonheme iron-dependent aromatic amino acid hydroxylase, phenylalanine hydroxylases (PAH). PAH catalyzes the hydroxylation of L-Phe to L-Tyr, the first step in the catabolic degradation of L-Phe. In PAH, an autoregulatory sequence, N-terminal of the ACT domain, extends across the catalytic domain active site and regulates the enzyme by intrasteric regulation. It appears that the activation by L-Phe induces a conformational change that converts the enzyme to a high-affinity and high-activity state. Modulation of activity is achieved through inhibition by BH4 and activation by phosphorylation of serine residues of the autoregulatory region. The molecular basis for the cooperative activation process is not fully understood yet. Members of this CD belong to the superfamily of ACT regulatory domains.

>COG4747 ACT domain-containing protein [General function prediction only]

Probab=95.22  E-value=0.16  Score=37.46  Aligned_cols=40  Identities=13%  Similarity=0.117  Sum_probs=36.0

Q ss_pred             EEEEEeCCcccHHHHHHHHHHHCCceEEEEEEEecCCe-eE
Q 028501           16 IVQLSFGDRLGALIDTMNALKDLGLDVAKGTVNTEGSV-KQ   55 (208)
Q Consensus        16 ~v~v~~~DrpGLl~~i~~~L~~~gl~I~~a~i~t~~~~-~~   55 (208)
                      ++-|..+|+||=|++|+.+|.++++|+..+..|++.+. ++
T Consensus        71 VlaVEmeD~PG~l~~I~~vl~d~diNldYiYAFv~ek~KAl  111 (142)
T COG4747          71 VLAVEMEDVPGGLSRIAEVLGDADINLDYIYAFVTEKQKAL  111 (142)
T ss_pred             EEEEEecCCCCcHHHHHHHHhhcCcCceeeeeeeecCceEE
Confidence            67888999999999999999999999999999887764 54

>TIGR00691 spoT_relA (p)ppGpp synthetase, RelA/SpoT family

Probab=95.21  E-value=0.22  Score=47.59  Aligned_cols=74  Identities=18%  Similarity=0.134  Sum_probs=50.9

Q ss_pred             EEEeecCCC-CeEEEEEEeCCcccHHHHHHHHHHHCCceEEEEEEEecCCee-EEEEEEeeCCCCCCCCCHHHHHHHHHH
Q 028501            4 VLIDQDSNS-DATIVQLSFGDRLGALIDTMNALKDLGLDVAKGTVNTEGSVK-QTKFFITRLDTGRKVEDPDLLERIRLT   81 (208)
Q Consensus         4 V~~~~~~~~-~~~~v~v~~~DrpGLl~~i~~~L~~~gl~I~~a~i~t~~~~~-~d~F~v~~~~~g~~~~~~~~~~~l~~~   81 (208)
                      |.|+..... -.+.|.|.+.||+|+|++|+.+|+..++||.+..+.+..++. .-.|.|.-.       +...+..+...
T Consensus       599 v~W~~~~~~~f~v~I~I~~~dr~GlLadI~~~ia~~~~nI~~v~~~~~~~~~~~~~~~ieV~-------~~~~L~~ii~~  671 (683)
T TIGR00691       599 VEWNASKPRRFIVDINIEAVDRKGVLSDLTTAISENDSNIVSISTKTYGKREAILNITVEIK-------NYKHLLKIMLK  671 (683)
T ss_pred             EEecCCCCceeEEEEEEEEecCCCHHHHHHHHHHHCCCCeEEEEeEEcCCCEEEEEEEEEEC-------CHHHHHHHHHH
Confidence            456543222 235789999999999999999999999999999998775443 323444432       23555666655


Q ss_pred             HHH
Q 028501           82 IIN   84 (208)
Q Consensus        82 L~~   84 (208)
                      |..
T Consensus       672 L~~  674 (683)
T TIGR00691       672 IKT  674 (683)
T ss_pred             HhC
Confidence            544

(p)ppGpp is a regulatory metabolite of the stringent response, but appears also to be involved in antibiotic biosynthesis in some species.

>COG1707 ACT domain-containing protein [General function prediction only]

Probab=95.21  E-value=0.08  Score=41.43  Aligned_cols=48  Identities=10%  Similarity=0.112  Sum_probs=39.6

Q ss_pred             EEEEEeCCcccHHHHHHHHHHHCCceEEEEEEEecCCeeEEEEEEeeC
Q 028501           16 IVQLSFGDRLGALIDTMNALKDLGLDVAKGTVNTEGSVKQTKFFITRL   63 (208)
Q Consensus        16 ~v~v~~~DrpGLl~~i~~~L~~~gl~I~~a~i~t~~~~~~d~F~v~~~   63 (208)
                      -+.+.+.++||.|.++++.+++.|.||..++.+..+++-....|..-.
T Consensus         4 ~lsi~~enk~GvL~~ltgiiae~ggNIt~~q~~~~~~g~~~~iYmEiE   51 (218)
T COG1707           4 GLSIIAENKPGVLRDLTGIIAEEGGNITYAQQFLEKDGEKALIYMEIE   51 (218)
T ss_pred             eeEEEeecCccHHHHHHHHHHhcCCceEeeehhhhccCceEEEEEEee
Confidence            478889999999999999999999999999999988753333555444

>COG1707 ACT domain-containing protein [General function prediction only]

Probab=95.20  E-value=0.078  Score=41.50  Aligned_cols=46  Identities=24%  Similarity=0.226  Sum_probs=37.3

Q ss_pred             EEEEEecCcchHHHHHHHHHHhCCccEEEEEEEecCCeEEEEEEEE
Q 028501          131 LLYIETADRPGLLVEIMKIIADVNVDVESAEIDTEGLVAKDKFHVS  176 (208)
Q Consensus       131 ~i~v~~~Dr~GlL~~i~~~l~~~~i~I~~a~i~t~~~~~~~~f~v~  176 (208)
                      -+.+.+.++||.|.+++..+++.|.||.++.....++......|..
T Consensus         4 ~lsi~~enk~GvL~~ltgiiae~ggNIt~~q~~~~~~g~~~~iYmE   49 (218)
T COG1707           4 GLSIIAENKPGVLRDLTGIIAEEGGNITYAQQFLEKDGEKALIYME   49 (218)
T ss_pred             eeEEEeecCccHHHHHHHHHHhcCCceEeeehhhhccCceEEEEEE
Confidence            4778899999999999999999999999999877665444444443

>PRK11092 bifunctional (p)ppGpp synthetase II/ guanosine-3',5'-bis pyrophosphate 3'-pyrophosphohydrolase; Provisional

Probab=95.19  E-value=0.24  Score=47.36  Aligned_cols=74  Identities=16%  Similarity=0.132  Sum_probs=51.9

Q ss_pred             EEEeecCCC-CeEEEEEEeCCcccHHHHHHHHHHHCCceEEEEEEEecCCe-eEEEEEEeeCCCCCCCCCHHHHHHHHHH
Q 028501            4 VLIDQDSNS-DATIVQLSFGDRLGALIDTMNALKDLGLDVAKGTVNTEGSV-KQTKFFITRLDTGRKVEDPDLLERIRLT   81 (208)
Q Consensus         4 V~~~~~~~~-~~~~v~v~~~DrpGLl~~i~~~L~~~gl~I~~a~i~t~~~~-~~d~F~v~~~~~g~~~~~~~~~~~l~~~   81 (208)
                      |.|+..... -...|.|.+.||+|+|++|+.+++..++||.+....+..+. +.-.|.+.-.       +.+.+.+|...
T Consensus       615 v~W~~~~~~~~~v~i~I~~~dr~GlL~dI~~~i~~~~~nI~~v~~~~~~~~~~~~~~~ieV~-------~~~~L~~i~~~  687 (702)
T PRK11092        615 VEWDKETEQEFIAEIKVEMFNHQGALANLTAAINTTGSNIQSLNTEEKDGRVYSAFIRLTAR-------DRVHLANIMRK  687 (702)
T ss_pred             eEECCCCCceeEEEEEEEEeCCCCHHHHHHHHHHHCCCCeEEEEEEEcCCCEEEEEEEEEEC-------CHHHHHHHHHH
Confidence            456543222 23478999999999999999999999999999998776644 3334555433       23566666666


Q ss_pred             HHH
Q 028501           82 IIN   84 (208)
Q Consensus        82 L~~   84 (208)
                      |+.
T Consensus       688 Lr~  690 (702)
T PRK11092        688 IRV  690 (702)
T ss_pred             HhC
Confidence            554

>COG0317 SpoT Guanosine polyphosphate pyrophosphohydrolases/synthetases [Signal transduction mechanisms / Transcription]

Probab=95.04  E-value=0.099  Score=49.63  Aligned_cols=47  Identities=19%  Similarity=0.316  Sum_probs=39.3

Q ss_pred             eEEEEEEecCcchHHHHHHHHHHhCCccEEEEEEEecCCeEE-EEEEE
Q 028501          129 RSLLYIETADRPGLLVEIMKIIADVNVDVESAEIDTEGLVAK-DKFHV  175 (208)
Q Consensus       129 ~~~i~v~~~Dr~GlL~~i~~~l~~~~i~I~~a~i~t~~~~~~-~~f~v  175 (208)
                      .+.|.|.+.||+|+|++|+++|+..++||.++...+..++.. -.|.+
T Consensus       627 ~~~i~v~~~~r~glL~~i~~~i~~~~~ni~~v~~~~~~~~~~~~~~~i  674 (701)
T COG0317         627 PVDIEIRAYDRSGLLRDVSQVLANEKINVLGVNTRSDKDQFATMQFTI  674 (701)
T ss_pred             EEEEEEEEccccchHHHHHHHHHhCCCceEEeeccccCCceEEEEEEE
Confidence            689999999999999999999999999999999988644433 33444

>cd04885 ACT_ThrD-I Tandem C-terminal ACT domains of threonine dehydratase I (ThrD-I; L-threonine hydrolyase)

Probab=95.01  E-value=0.1  Score=34.35  Aligned_cols=33  Identities=15%  Similarity=0.421  Sum_probs=29.0

Q ss_pred             EEEecCcchHHHHHHHHHHhCCccEEEEEEEecC
Q 028501          133 YIETADRPGLLVEIMKIIADVNVDVESAEIDTEG  166 (208)
Q Consensus       133 ~v~~~Dr~GlL~~i~~~l~~~~i~I~~a~i~t~~  166 (208)
                      .|.-+||||-|..+++.|+. |.||..++-...+
T Consensus         2 ~v~ipdkPG~l~~~~~~i~~-~~nI~~~~~~~~~   34 (68)
T cd04885           2 AVTFPERPGALKKFLELLGP-PRNITEFHYRNQG   34 (68)
T ss_pred             EEECCCCCCHHHHHHHHhCC-CCcEEEEEEEcCC
Confidence            57789999999999999999 9999998876544

This CD includes each of two tandem C-terminal ACT domains of threonine dehydratase I (ThrD-I; L-threonine hydrolyase) which catalyzes the committed step in branched chain amino acid biosynthesis in plants and microorganisms, the pyridoxal 5'-phosphate (PLP)-dependent dehydration/deamination of L-threonine (or L-serine) to 2-ketobutyrate (or pyruvate). ThrD-I is a cooperative, feedback-regulated (isoleucine and valine) allosteric enzyme that forms a tetramer and contains four pyridoxal phosphate moieties. Members of this CD belong to the superfamily of ACT regulatory domains.

>PLN02551 aspartokinase

Probab=95.01  E-value=1  Score=41.62  Aligned_cols=124  Identities=15%  Similarity=0.203  Sum_probs=73.5

Q ss_pred             CCeEEEEEEeC---CcccHHHHHHHHHHHCCceEEEEEEEecCCeeEEEEEEeeCCCCCCCCCHHHHHHHHHHHHHhhcc
Q 028501           12 SDATIVQLSFG---DRLGALIDTMNALKDLGLDVAKGTVNTEGSVKQTKFFITRLDTGRKVEDPDLLERIRLTIINNLLK   88 (208)
Q Consensus        12 ~~~~~v~v~~~---DrpGLl~~i~~~L~~~gl~I~~a~i~t~~~~~~d~F~v~~~~~g~~~~~~~~~~~l~~~L~~~l~~   88 (208)
                      ++.+.|+|.+.   +.+|.++++.+.|.++|++|.-.  .+....+  .|.+...+    +   ...+.+++.+.+.+..
T Consensus       364 ~~v~li~i~~~~m~~~~g~~arvf~~l~~~~I~Vd~I--ssSe~sI--s~~v~~~~----~---~~~~~i~~~l~~l~~e  432 (521)
T PLN02551        364 RNVTMLDIVSTRMLGQYGFLAKVFSTFEDLGISVDVV--ATSEVSI--SLTLDPSK----L---WSRELIQQELDHLVEE  432 (521)
T ss_pred             CCeEEEEEecCCCCCcccHHHHHHHHHHHcCCcEEEE--eccCCEE--EEEEehhH----h---hhhhhHHHHHHHHHHH
Confidence            35578888765   68999999999999999999944  4433222  36564331    1   1122333333332211


Q ss_pred             CCCCchhhhhccccccCCCCCcccCCccccEEEEecCCCCeEEEEEEec--CcchHHHHHHHHHHhCCccEEEEEEEecC
Q 028501           89 YHPESSEQLAMGEAFGIKAPEKKLDVDIATHIHVKEDGPKRSLLYIETA--DRPGLLVEIMKIIADVNVDVESAEIDTEG  166 (208)
Q Consensus        89 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~V~~~~~~~~~~~i~v~~~--Dr~GlL~~i~~~l~~~~i~I~~a~i~t~~  166 (208)
                              +      . +       +   ..|.+..   +...|.+.|.  .++|+++.+..+|++.|+||......+. 
T Consensus       433 --------l------~-~-------~---~~V~v~~---~vAiISvVG~~~~~~gvaariF~aLa~~gInV~mIsqgaS-  483 (521)
T PLN02551        433 --------L------E-K-------I---AVVNLLQ---GRSIISLIGNVQRSSLILEKVFRVLRTNGVNVQMISQGAS-  483 (521)
T ss_pred             --------h------h-c-------C---CeEEEeC---CEEEEEEEccCCCCccHHHHHHHHHHHCCCCeEEEEecCC-
Confidence                    0      0 0       0   1133333   2355666654  6899999999999999999987765431 


Q ss_pred             CeEEEEEEEE
Q 028501          167 LVAKDKFHVS  176 (208)
Q Consensus       167 ~~~~~~f~v~  176 (208)
                       ...-.|.|.
T Consensus       484 -einIS~vV~  492 (521)
T PLN02551        484 -KVNISLIVN  492 (521)
T ss_pred             -CcEEEEEEe
Confidence             222336664

>COG0317 SpoT Guanosine polyphosphate pyrophosphohydrolases/synthetases [Signal transduction mechanisms / Transcription]

Probab=94.84  E-value=0.25  Score=46.99  Aligned_cols=74  Identities=18%  Similarity=0.146  Sum_probs=51.2

Q ss_pred             EEEeecC-CCCeEEEEEEeCCcccHHHHHHHHHHHCCceEEEEEEEecCCeeEEE-EEEeeCCCCCCCCCHHHHHHHHHH
Q 028501            4 VLIDQDS-NSDATIVQLSFGDRLGALIDTMNALKDLGLDVAKGTVNTEGSVKQTK-FFITRLDTGRKVEDPDLLERIRLT   81 (208)
Q Consensus         4 V~~~~~~-~~~~~~v~v~~~DrpGLl~~i~~~L~~~gl~I~~a~i~t~~~~~~d~-F~v~~~~~g~~~~~~~~~~~l~~~   81 (208)
                      |.|+... ..-...|.|.+.||+|+|++|+.+|+..+.||......+..+.+..+ |.+.-.       +...+.++...
T Consensus       616 v~W~~~~~~~f~~~i~v~~~~r~glL~~i~~~i~~~~~ni~~v~~~~~~~~~~~~~~~i~v~-------n~~~L~~i~~~  688 (701)
T COG0317         616 VSWGPEYGQVYPVDIEIRAYDRSGLLRDVSQVLANEKINVLGVNTRSDKDQFATMQFTIEVK-------NLNHLGRVLAR  688 (701)
T ss_pred             EEecCCCCcceEEEEEEEEccccchHHHHHHHHHhCCCceEEeeccccCCceEEEEEEEEEC-------cHHHHHHHHHH
Confidence            4565553 23346899999999999999999999999999988887764544332 333322       23455666655


Q ss_pred             HHH
Q 028501           82 IIN   84 (208)
Q Consensus        82 L~~   84 (208)
                      |..
T Consensus       689 l~~  691 (701)
T COG0317         689 LKQ  691 (701)
T ss_pred             Hhc
Confidence            544

>PF13840 ACT_7: ACT domain ; PDB: 3S1T_A 1ZHV_A 3AB4_K 3AB2_O 2DTJ_A 3AAW_A 2RE1_B 3MAH_A 1ZVP_D

Probab=94.58  E-value=0.079  Score=34.75  Aligned_cols=43  Identities=14%  Similarity=0.243  Sum_probs=32.7

Q ss_pred             eEEEEEEec----CcchHHHHHHHHHHhCCccEEEEEEEecCCeEEEEEEEE
Q 028501          129 RSLLYIETA----DRPGLLVEIMKIIADVNVDVESAEIDTEGLVAKDKFHVS  176 (208)
Q Consensus       129 ~~~i~v~~~----Dr~GlL~~i~~~l~~~~i~I~~a~i~t~~~~~~~~f~v~  176 (208)
                      ...|.|.|.    |.||+++.++..|++.|++|..+.  +   ...+.+.|.
T Consensus         6 ~~~i~v~g~g~~~~~~Gv~a~i~~~La~~~I~i~~is--S---~~~~~ilV~   52 (65)
T PF13840_consen    6 WAKISVVGPGLRFDVPGVAAKIFSALAEAGINIFMIS--S---EISISILVK   52 (65)
T ss_dssp             EEEEEEEEECGTTTSHHHHHHHHHHHHHTTS-ECEEE--E---SSEEEEEEE
T ss_pred             EEEEEEEccccCCCcccHHHHHHHHHHHCCCCEEEEE--E---eeeEEEEEe
Confidence            467777777    899999999999999999998887  2   134455564

>PRK09181 aspartate kinase; Validated

Probab=94.37  E-value=2.6  Score=38.58  Aligned_cols=106  Identities=11%  Similarity=0.177  Sum_probs=67.5

Q ss_pred             CeEEEEEEeC---CcccHHHHHHHHHHHCCceEEEEEEEecCCeeEEEEEEeeCCCCCCCCCHHHHHHHHHHHHHhhccC
Q 028501           13 DATIVQLSFG---DRLGALIDTMNALKDLGLDVAKGTVNTEGSVKQTKFFITRLDTGRKVEDPDLLERIRLTIINNLLKY   89 (208)
Q Consensus        13 ~~~~v~v~~~---DrpGLl~~i~~~L~~~gl~I~~a~i~t~~~~~~d~F~v~~~~~g~~~~~~~~~~~l~~~L~~~l~~~   89 (208)
                      +.+.|+|.+.   +.+|+.+++.+.|.++|++|.  .+.+....+  .|.+..    .    .+.++++...|...+.. 
T Consensus       328 ~~~~i~i~~~~~~~~~g~~~~if~~l~~~~i~v~--~i~ss~~si--s~~v~~----~----~~~~~~~~~~L~~~~~~-  394 (475)
T PRK09181        328 KVFALEVFDQDMVGEDGYDLEILEILTRHKVSYI--SKATNANTI--THYLWG----S----LKTLKRVIAELEKRYPN-  394 (475)
T ss_pred             CEEEEEEcCCCCCCcchHHHHHHHHHHHcCCeEE--EEEecCcEE--EEEEcC----C----hHHHHHHHHHHHHhcCC-
Confidence            5567787654   689999999999999999998  444443222  355532    1    12233443344332210 


Q ss_pred             CCCchhhhhccccccCCCCCcccCCccccEEEEecCCCCeEEEEEEecC--cchHHHHHHHHHHhCCccEEEEEEE
Q 028501           90 HPESSEQLAMGEAFGIKAPEKKLDVDIATHIHVKEDGPKRSLLYIETAD--RPGLLVEIMKIIADVNVDVESAEID  163 (208)
Q Consensus        90 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~V~~~~~~~~~~~i~v~~~D--r~GlL~~i~~~l~~~~i~I~~a~i~  163 (208)
                                                  .+|..    .+...|.+.|..  +||+.+.+..+|++.|+||......
T Consensus       395 ----------------------------~~i~~----~~~a~VsvVG~gm~~~gv~ak~f~aL~~~~Ini~~i~qg  438 (475)
T PRK09181        395 ----------------------------AEVTV----RKVAIVSAIGSNIAVPGVLAKAVQALAEAGINVLALHQS  438 (475)
T ss_pred             ----------------------------ceEEE----CCceEEEEeCCCCCcccHHHHHHHHHHHCCCCeEEEEec
Confidence                                        01221    223567776654  8999999999999999999776644

>PRK06382 threonine dehydratase; Provisional

Probab=94.36  E-value=0.15  Score=45.60  Aligned_cols=35  Identities=31%  Similarity=0.377  Sum_probs=32.6

Q ss_pred             eEEEEEEecCcchHHHHHHHHHHhCCccEEEEEEE
Q 028501          129 RSLLYIETADRPGLLVEIMKIIADVNVDVESAEID  163 (208)
Q Consensus       129 ~~~i~v~~~Dr~GlL~~i~~~l~~~~i~I~~a~i~  163 (208)
                      .+.+.|.-+|+||.|.+|++.|.++|+||.++...
T Consensus       330 ~~rl~v~v~D~pG~L~~l~~ii~~~~~nI~~v~~~  364 (406)
T PRK06382        330 LVRIECNIPDRPGNLYRIANAIASNGGNIYHAEVD  364 (406)
T ss_pred             EEEEEEEcCCCCCHHHHHHHHHhcCCCcEEEEEEe
Confidence            68899999999999999999999999999988764

>PRK08818 prephenate dehydrogenase; Provisional

Probab=94.31  E-value=0.15  Score=45.18  Aligned_cols=51  Identities=18%  Similarity=0.297  Sum_probs=39.6

Q ss_pred             CeEEEEEEec-CcchHHHHHHHHHHhCCccEEEEEEEecCCeEEEEEEEEeCC
Q 028501          128 KRSLLYIETA-DRPGLLVEIMKIIADVNVDVESAEIDTEGLVAKDKFHVSYGG  179 (208)
Q Consensus       128 ~~~~i~v~~~-Dr~GlL~~i~~~l~~~~i~I~~a~i~t~~~~~~~~f~v~~~g  179 (208)
                      ..+.+.+.-+ |+||.|++|+..|+++||||.++.+........- |+++-.+
T Consensus       294 ~~~~l~~~v~~d~pG~L~~vl~~la~~~INit~Ies~~~r~~~y~-f~i~~~~  345 (370)
T PRK08818        294 EPLTLSVYLPEDRPGSLRTLLHVFEQHGVNLSSIHSSRTPAGELH-FRIGFEP  345 (370)
T ss_pred             cceEEEEECCCCCCChHHHHHHHHHHcCcccceEEEecccCceEE-EEEEEec
Confidence            4677788776 9999999999999999999999999332333333 8887544

>PRK09436 thrA bifunctional aspartokinase I/homoserine dehydrogenase I; Provisional

Probab=94.23  E-value=2.1  Score=41.85  Aligned_cols=115  Identities=12%  Similarity=0.190  Sum_probs=71.0

Q ss_pred             CCeEEEEEEeC---CcccHHHHHHHHHHHCCceEEEEEEEecCCeeEEEEEEeeCCCCCCCCCHHHHHHHHHHHHHhhcc
Q 028501           12 SDATIVQLSFG---DRLGALIDTMNALKDLGLDVAKGTVNTEGSVKQTKFFITRLDTGRKVEDPDLLERIRLTIINNLLK   88 (208)
Q Consensus        12 ~~~~~v~v~~~---DrpGLl~~i~~~L~~~gl~I~~a~i~t~~~~~~d~F~v~~~~~g~~~~~~~~~~~l~~~L~~~l~~   88 (208)
                      ++...|+|.+.   .+||+++++..+|.++|++|.-....+....+  .|.|...          ..++....|.+.+..
T Consensus       313 ~dvalIsV~G~gm~~~~G~~arIf~~La~~gI~V~mIsqssSe~sI--sf~V~~~----------d~~~av~~L~~~f~~  380 (819)
T PRK09436        313 NNMAMFNVSGPGMKGMVGMASRVFAALSRAGISVVLITQSSSEYSI--SFCVPQS----------DAAKAKRALEEEFAL  380 (819)
T ss_pred             CCEEEEEEEcCCCCCCcCHHHHHHHHHHHCCCcEEEEEcCCCCceE--EEEEeHH----------HHHHHHHHHHHHHHH
Confidence            45678888864   68999999999999999999744433222222  3555432          122333334433311


Q ss_pred             CCCCchhhhhccccccCCCCCcccCCccccEEEEecCCCCeEEEEEEec---CcchHHHHHHHHHHhCCccEEEEEEE
Q 028501           89 YHPESSEQLAMGEAFGIKAPEKKLDVDIATHIHVKEDGPKRSLLYIETA---DRPGLLVEIMKIIADVNVDVESAEID  163 (208)
Q Consensus        89 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~V~~~~~~~~~~~i~v~~~---Dr~GlL~~i~~~l~~~~i~I~~a~i~  163 (208)
                             .+      ...      .   ...|.+.+   +...|.+.|.   ++||+++++..+|++.|+||......
T Consensus       381 -------el------~~~------~---~~~i~~~~---~valIsvvG~gm~~~~gv~arif~aL~~~~InI~~Isqg  433 (819)
T PRK09436        381 -------EL------KEG------L---LEPLEVEE---NLAIISVVGDGMRTHPGIAAKFFSALGRANINIVAIAQG  433 (819)
T ss_pred             -------Hh------ccC------C---cceEEEeC---CEEEEEEEccCcccCcCHHHHHHHHHHHCCCCEEEEEec
Confidence                   00      000      0   01133322   3467888776   78999999999999999999877543

>PF13840 ACT_7: ACT domain ; PDB: 3S1T_A 1ZHV_A 3AB4_K 3AB2_O 2DTJ_A 3AAW_A 2RE1_B 3MAH_A 1ZVP_D

Probab=94.19  E-value=0.22  Score=32.63  Aligned_cols=47  Identities=15%  Similarity=0.183  Sum_probs=35.0

Q ss_pred             CCCeEEEEEEeC----CcccHHHHHHHHHHHCCceEEEEEEEecCCeeEEEEEEee
Q 028501           11 NSDATIVQLSFG----DRLGALIDTMNALKDLGLDVAKGTVNTEGSVKQTKFFITR   62 (208)
Q Consensus        11 ~~~~~~v~v~~~----DrpGLl~~i~~~L~~~gl~I~~a~i~t~~~~~~d~F~v~~   62 (208)
                      ..++..|+|.++    |.||++++++..|++.|++|....     .+.-+.|.|..
T Consensus         3 ~~~~~~i~v~g~g~~~~~~Gv~a~i~~~La~~~I~i~~is-----S~~~~~ilV~~   53 (65)
T PF13840_consen    3 EEDWAKISVVGPGLRFDVPGVAAKIFSALAEAGINIFMIS-----SEISISILVKE   53 (65)
T ss_dssp             ESEEEEEEEEEECGTTTSHHHHHHHHHHHHHTTS-ECEEE-----ESSEEEEEEEG
T ss_pred             cCCEEEEEEEccccCCCcccHHHHHHHHHHHCCCCEEEEE-----EeeeEEEEEeH
Confidence            346678999988    799999999999999999998554     23334455653

>PRK09034 aspartate kinase; Reviewed

Probab=94.15  E-value=4.3  Score=36.84  Aligned_cols=121  Identities=15%  Similarity=0.208  Sum_probs=71.3

Q ss_pred             CeEEEEEEe---CCcccHHHHHHHHHHHCCceEEEEEEEecCCeeEEEEEEeeCCCCCCCCCHHHHHHHHHHHHHhhccC
Q 028501           13 DATIVQLSF---GDRLGALIDTMNALKDLGLDVAKGTVNTEGSVKQTKFFITRLDTGRKVEDPDLLERIRLTIINNLLKY   89 (208)
Q Consensus        13 ~~~~v~v~~---~DrpGLl~~i~~~L~~~gl~I~~a~i~t~~~~~~d~F~v~~~~~g~~~~~~~~~~~l~~~L~~~l~~~   89 (208)
                      +.+.|++.+   .+++|+++++.+.|.++|++|.-.  .+....+  .|.+...+    +. ...+..+...|...+.  
T Consensus       307 ~i~~Itv~~~~~~~~~g~~a~if~~la~~~I~Vd~i--~ss~~si--s~~v~~~~----~~-~a~~~~l~~el~~~~~--  375 (454)
T PRK09034        307 GFTSIYISKYLMNREVGFGRKVLQILEDHGISYEHM--PSGIDDL--SIIIRERQ----LT-PKKEDEILAEIKQELN--  375 (454)
T ss_pred             CEEEEEEccCCCCCCccHHHHHHHHHHHcCCeEEEE--cCCCcEE--EEEEeHHH----hh-HHHHHHHHHHHHHhhC--
Confidence            456777774   678999999999999999999954  2221122  36665321    10 0000222222221110  


Q ss_pred             CCCchhhhhccccccCCCCCcccCCccccEEEEecCCCCeEEEEEEec---CcchHHHHHHHHHHhCCccEEEEEEEecC
Q 028501           90 HPESSEQLAMGEAFGIKAPEKKLDVDIATHIHVKEDGPKRSLLYIETA---DRPGLLVEIMKIIADVNVDVESAEIDTEG  166 (208)
Q Consensus        90 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~V~~~~~~~~~~~i~v~~~---Dr~GlL~~i~~~l~~~~i~I~~a~i~t~~  166 (208)
                                                 ...|.+..   +...|.+.|.   ++||+++++..+|++.|+||..+...+. 
T Consensus       376 ---------------------------~~~I~~~~---~va~VsivG~g~~~~~gv~arif~aL~~~~InV~mIsq~~S-  424 (454)
T PRK09034        376 ---------------------------PDELEIEH---DLAIIMVVGEGMRQTVGVAAKITKALAEANINIQMINQGSS-  424 (454)
T ss_pred             ---------------------------CceEEEeC---CEEEEEEECCCCCCCccHHHHHHHHHHHCCCCEEEEEecCC-
Confidence                                       01123222   2367777554   7899999999999999999988865431 


Q ss_pred             CeEEEEEEEE
Q 028501          167 LVAKDKFHVS  176 (208)
Q Consensus       167 ~~~~~~f~v~  176 (208)
                      + ..-.|.|.
T Consensus       425 e-~~Is~vV~  433 (454)
T PRK09034        425 E-ISIMFGVK  433 (454)
T ss_pred             c-ceEEEEEc
Confidence            1 22346664

>COG0527 LysC Aspartokinases [Amino acid transport and metabolism]

Probab=94.11  E-value=1.9  Score=39.13  Aligned_cols=119  Identities=19%  Similarity=0.266  Sum_probs=71.9

Q ss_pred             CCeEEEEEEeCC---cccHHHHHHHHHHHCCceEEEEEEEecCCeeEEEEEEeeCCCCCCCCCHHHHHHHHHHHHHhhcc
Q 028501           12 SDATIVQLSFGD---RLGALIDTMNALKDLGLDVAKGTVNTEGSVKQTKFFITRLDTGRKVEDPDLLERIRLTIINNLLK   88 (208)
Q Consensus        12 ~~~~~v~v~~~D---rpGLl~~i~~~L~~~gl~I~~a~i~t~~~~~~d~F~v~~~~~g~~~~~~~~~~~l~~~L~~~l~~   88 (208)
                      .+.+.|+|.+..   .+|.++++...|.++|+++.--........  -+|.+...+          ..+....|.+.+..
T Consensus       305 ~~~~~i~v~~~~~~~~~g~~a~vf~~l~~~~i~v~~I~q~~~~~~--i~~~v~~~~----------~~~a~~~l~~~~~~  372 (447)
T COG0527         305 DNVALITVSGPGMNGMVGFAARVFGILAEAGINVDLITQSISEVS--ISFTVPESD----------APRALRALLEEKLE  372 (447)
T ss_pred             CCeEEEEEEccCccccccHHHHHHHHHHHcCCcEEEEEeccCCCe--EEEEEchhh----------HHHHHHHHHHHHhh
Confidence            566778887543   459999999999999999983322222233  346665331          12333344442321


Q ss_pred             CCCCchhhhhccccccCCCCCcccCCccccEEEEecCCCCeEEEEEEec---CcchHHHHHHHHHHhCCccEEEEEEEec
Q 028501           89 YHPESSEQLAMGEAFGIKAPEKKLDVDIATHIHVKEDGPKRSLLYIETA---DRPGLLVEIMKIIADVNVDVESAEIDTE  165 (208)
Q Consensus        89 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~V~~~~~~~~~~~i~v~~~---Dr~GlL~~i~~~l~~~~i~I~~a~i~t~  165 (208)
                      .                .          . ++.++.+   ...+.+.|.   ..||+.+.+..+|++.++||.....   
T Consensus       373 ~----------------~----------~-~v~~~~~---~a~vsiVG~gm~~~~gvaa~~f~aL~~~~ini~~iss---  419 (447)
T COG0527         373 L----------------L----------A-EVEVEEG---LALVSIVGAGMRSNPGVAARIFQALAEENINIIMISS---  419 (447)
T ss_pred             h----------------c----------c-eEEeeCC---eeEEEEEccccccCcCHHHHHHHHHHhCCCcEEEEEc---
Confidence            0                0          0 1222222   245555554   6789999999999999999998872   


Q ss_pred             CCeEEEEEEEE
Q 028501          166 GLVAKDKFHVS  176 (208)
Q Consensus       166 ~~~~~~~f~v~  176 (208)
                       ....-.|.|.
T Consensus       420 -Se~~Is~vV~  429 (447)
T COG0527         420 -SEISISFVVD  429 (447)
T ss_pred             -CCceEEEEEc
Confidence             2233456674

>TIGR01327 PGDH D-3-phosphoglycerate dehydrogenase

Probab=94.06  E-value=0.18  Score=46.56  Aligned_cols=62  Identities=11%  Similarity=0.256  Sum_probs=43.7

Q ss_pred             eEEEEEEecCcchHHHHHHHHHHhCCccEEEEEEEecCCeEEEEEEEEeCCCCCChHHHHHHH
Q 028501          129 RSLLYIETADRPGLLVEIMKIIADVNVDVESAEIDTEGLVAKDKFHVSYGGAALNSSLSQVLV  191 (208)
Q Consensus       129 ~~~i~v~~~Dr~GlL~~i~~~l~~~~i~I~~a~i~t~~~~~~~~f~v~~~g~~~~~~~~~~l~  191 (208)
                      ...+-+...|+||.+..|+..|.++++||..+++.........++.+.-++ +++++..++|+
T Consensus       451 ~~~li~~~~D~pG~I~~v~~~L~~~~iNIa~m~~~R~~~g~~al~~i~~D~-~v~~~~l~~i~  512 (525)
T TIGR01327       451 GIMLIILHLDKPGVIGKVGTLLGTAGINIASMQLGRKEKGGEALMLLSLDQ-PVPDEVLEEIK  512 (525)
T ss_pred             ccEEEEEecCcCCcchHHHhHHhhcCCChHHcEeecCCCCCeEEEEEEcCC-CCCHHHHHHHh
Confidence            455566779999999999999999999999999887544333333333222 44566556554

This model represents a long form of D-3-phosphoglycerate dehydrogenase, the serA gene of one pathway of serine biosynthesis. Shorter forms, scoring between trusted and noise cutoff, include SerA from E. coli.

>PRK06545 prephenate dehydrogenase; Validated

Probab=94.00  E-value=0.12  Score=45.41  Aligned_cols=50  Identities=20%  Similarity=0.413  Sum_probs=40.9

Q ss_pred             CCeEEEEEEecCcchHHHHHHHHHHhCCccEEEEEEEecCCeEEEEEEEE
Q 028501          127 PKRSLLYIETADRPGLLVEIMKIIADVNVDVESAEIDTEGLVAKDKFHVS  176 (208)
Q Consensus       127 ~~~~~i~v~~~Dr~GlL~~i~~~l~~~~i~I~~a~i~t~~~~~~~~f~v~  176 (208)
                      ..++.+.|.-+|+||-++.|+..|++.|+||.++++.-..+...-++.++
T Consensus       288 ~~~~~~~v~v~d~pg~~~~~~~~~~~~~i~i~~~~i~~~~~~~~g~~~~~  337 (359)
T PRK06545        288 PSFYDLYVDVPDEPGVIARVTAILGEEGISIENLRILEAREDIHGVLQIS  337 (359)
T ss_pred             CcceEEEEeCCCCCCHHHHHHHHHHHcCCCeecceeeeccCCcCceEEEE
Confidence            45789999999999999999999999999999999976555444444443

>PRK13581 D-3-phosphoglycerate dehydrogenase; Provisional

Probab=94.00  E-value=0.24  Score=45.81  Aligned_cols=63  Identities=13%  Similarity=0.307  Sum_probs=43.7

Q ss_pred             CeEEEEEEecCcchHHHHHHHHHHhCCccEEEEEEEecCCeEEEEEEEEeCCCCCChHHHHHHH
Q 028501          128 KRSLLYIETADRPGLLVEIMKIIADVNVDVESAEIDTEGLVAKDKFHVSYGGAALNSSLSQVLV  191 (208)
Q Consensus       128 ~~~~i~v~~~Dr~GlL~~i~~~l~~~~i~I~~a~i~t~~~~~~~~f~v~~~g~~~~~~~~~~l~  191 (208)
                      +...+-+...|+||.+..|+..|+++++||..+++.........++.+.-+ .+++++..++|+
T Consensus       451 ~~~~li~~~~D~pG~I~~v~~~L~~~~iNIa~m~~~r~~~g~~al~~i~~D-~~v~~~~l~~i~  513 (526)
T PRK13581        451 EGHMLIIRNRDRPGVIGKVGTLLGEAGINIAGMQLGRREAGGEALMVLSVD-DPVPEEVLEELR  513 (526)
T ss_pred             CceEEEEEeCCcCChhHHHHHHHhhcCCCchhcEeccCCCCCeEEEEEECC-CCCCHHHHHHHh
Confidence            345566677999999999999999999999999998754333333333212 244555555554

>cd04871 ACT_PSP_2 ACT domains found N-terminal of phosphoserine phosphatase (PSP, SerB)

Probab=93.89  E-value=0.042  Score=38.06  Aligned_cols=30  Identities=23%  Similarity=0.235  Sum_probs=27.5

Q ss_pred             EEEEEeCC-cccHHHHHHHHHHHCCceEEEE
Q 028501           16 IVQLSFGD-RLGALIDTMNALKDLGLDVAKG   45 (208)
Q Consensus        16 ~v~v~~~D-rpGLl~~i~~~L~~~gl~I~~a   45 (208)
                      .|+|.+.| ..|++++++++|+++|+||.+-
T Consensus         1 ivtvlg~~~~a~~ia~Vs~~lA~~~~NI~~I   31 (84)
T cd04871           1 IVTLLGRPLTAEQLAAVTRVVADQGLNIDRI   31 (84)
T ss_pred             CEEEEcCcCCHHHHHHHHHHHHHcCCCHHHH
Confidence            37999999 9999999999999999999843

The ACT_PSP_2 CD includes the second of the two ACT domains found N-terminal of phosphoserine phosphatase (PSP, SerB). PSPs belong to the L-2-haloacid dehalogenase-like protein superfamily. PSP is involved in serine metabolism; serine is synthesized from phosphoglycerate through sequential reactions catalyzed by 3-phosphoglycerate dehydrogenase (SerA), 3-phosphoserine aminotransferase (SerC), and SerB. Members of this CD belong to the superfamily of ACT regulatory domains

>cd04906 ACT_ThrD-I_1 First of two tandem C-terminal ACT domains of threonine dehydratase I (ThrD-I; L-threonine hydrolyase)

Probab=93.86  E-value=0.71  Score=31.74  Aligned_cols=61  Identities=5%  Similarity=0.048  Sum_probs=37.7

Q ss_pred             EEEEEeCCcccHHHHHHHHHHHCCceEEEEEEEecC-CeeEEEEEEeeCCCCCCCCCHHHHHHHHHHHHH
Q 028501           16 IVQLSFGDRLGALIDTMNALKDLGLDVAKGTVNTEG-SVKQTKFFITRLDTGRKVEDPDLLERIRLTIIN   84 (208)
Q Consensus        16 ~v~v~~~DrpGLl~~i~~~L~~~gl~I~~a~i~t~~-~~~~d~F~v~~~~~g~~~~~~~~~~~l~~~L~~   84 (208)
                      .+.|.-+|+||-|++++.+|.  +.||....-.... +...-.+.+...  ++    ++..+.+.+.|++
T Consensus         3 vl~v~ipD~PG~L~~ll~~l~--~anI~~~~y~~~~~~~~~v~i~ie~~--~~----~~~~~~i~~~L~~   64 (85)
T cd04906           3 LLAVTIPERPGSFKKFCELIG--PRNITEFNYRYADEKDAHIFVGVSVA--NG----AEELAELLEDLKS   64 (85)
T ss_pred             EEEEecCCCCcHHHHHHHHhC--CCceeEEEEEccCCCeeEEEEEEEeC--Cc----HHHHHHHHHHHHH
Confidence            577888999999999999999  6666644443332 222222333322  21    2556667777655

This CD includes the first of two tandem C-terminal ACT domains of threonine dehydratase I (ThrD-I; L-threonine hydrolyase) which catalyzes the committed step in branched chain amino acid biosynthesis in plants and microorganisms, the pyridoxal 5'-phosphate (PLP)-dependent dehydration/deamination of L-threonine (or L-serine) to 2-ketobutyrate (or pyruvate). ThrD-I is a cooperative, feedback-regulated (isoleucine and valine) allosteric enzyme that forms a tetramer and contains four pyridoxal phosphate moieties. Members of this CD belong to the superfamily of ACT regulatory domains.

>PRK11898 prephenate dehydratase; Provisional

Probab=93.66  E-value=0.37  Score=41.02  Aligned_cols=53  Identities=15%  Similarity=0.188  Sum_probs=42.6

Q ss_pred             eEEEEEEecC-cchHHHHHHHHHHhCCccEEEEEEEecCCeEEE-EEEEEeCCCC
Q 028501          129 RSLLYIETAD-RPGLLVEIMKIIADVNVDVESAEIDTEGLVAKD-KFHVSYGGAA  181 (208)
Q Consensus       129 ~~~i~v~~~D-r~GlL~~i~~~l~~~~i~I~~a~i~t~~~~~~~-~f~v~~~g~~  181 (208)
                      .+.+-+.-.+ +||-|+++-..|+++|+|+.++......++.+. .|+++-+|..
T Consensus       196 ktslif~l~~~~pGsL~~~L~~F~~~~INLt~IeSRP~~~~~~~y~F~vd~eg~~  250 (283)
T PRK11898        196 KTSLVLTLPNNLPGALYKALSEFAWRGINLTRIESRPTKTGLGTYFFFIDVEGHI  250 (283)
T ss_pred             eEEEEEEeCCCCccHHHHHHHHHHHCCCCeeeEecccCCCCCccEEEEEEEEccC
Confidence            4666666655 699999999999999999999999887766554 6888767765

>cd04929 ACT_TPH ACT domain of the nonheme iron-dependent aromatic amino acid hydroxylase, tryptophan hydroxylases (TPH), both peripheral (TPH1) and neuronal (TPH2) enzymes

Probab=93.64  E-value=0.98  Score=30.42  Aligned_cols=45  Identities=20%  Similarity=0.465  Sum_probs=33.1

Q ss_pred             EEEEeCCcccHHHHHHHHHHHCCceEEEEEEEecCC---eeEEEEEEeeC
Q 028501           17 VQLSFGDRLGALIDTMNALKDLGLDVAKGTVNTEGS---VKQTKFFITRL   63 (208)
Q Consensus        17 v~v~~~DrpGLl~~i~~~L~~~gl~I~~a~i~t~~~---~~~d~F~v~~~   63 (208)
                      +.+..+|+||-|+++...|..+|+|+.  +|.+.+.   ..--.|+|.-.
T Consensus         3 l~~~l~~~~g~L~~iL~~f~~~~inl~--~IeSRP~~~~~~~y~F~id~e   50 (74)
T cd04929           3 VIFSLKNEVGGLAKALKLFQELGINVV--HIESRKSKRRSSEFEIFVDCE   50 (74)
T ss_pred             EEEEcCCCCcHHHHHHHHHHHCCCCEE--EEEeccCCCCCceEEEEEEEE
Confidence            344458999999999999999999999  5555543   12334777654

ACT domain of the nonheme iron-dependent aromatic amino acid hydroxylase, tryptophan hydroxylases (TPH), both peripheral (TPH1) and neuronal (TPH2) enzymes. TPH catalyses the hydroxylation of L-Trp to 5-hydroxytryptophan, the rate limiting step in the biosynthesis of 5-hydroxytryptamine (serotonin) and the first reaction in the synthesis of melatonin. Very little is known about the role of the ACT domain in TPH, which appears to be regulated by phosphorylation but not by its substrate or cofactor. Members of this CD belong to the superfamily of ACT regulatory domains.

>cd04904 ACT_AAAH ACT domain of the nonheme iron-dependent, aromatic amino acid hydroxylases (AAAH)

Probab=93.58  E-value=1.1  Score=30.01  Aligned_cols=45  Identities=18%  Similarity=0.467  Sum_probs=33.2

Q ss_pred             EEEEeCCcccHHHHHHHHHHHCCceEEEEEEEecCC--e-eEEEEEEeeC
Q 028501           17 VQLSFGDRLGALIDTMNALKDLGLDVAKGTVNTEGS--V-KQTKFFITRL   63 (208)
Q Consensus        17 v~v~~~DrpGLl~~i~~~L~~~gl~I~~a~i~t~~~--~-~~d~F~v~~~   63 (208)
                      +.+..+|+||-|+++...|+.+|+|+.  +|.+.+-  . .--.|+|.-.
T Consensus         3 l~f~l~~~pG~L~~vL~~f~~~~iNlt--~IeSRP~~~~~~~y~Ffvd~~   50 (74)
T cd04904           3 LIFSLKEEVGALARALKLFEEFGVNLT--HIESRPSRRNGSEYEFFVDCE   50 (74)
T ss_pred             EEEEeCCCCcHHHHHHHHHHHCCCcEE--EEECCCCCCCCceEEEEEEEE
Confidence            444558999999999999999999999  6666543  1 2234777644

ACT domain of the nonheme iron-dependent, aromatic amino acid hydroxylases (AAAH): Phenylalanine hydroxylases (PAH), tyrosine hydroxylases (TH) and tryptophan hydroxylases (TPH), both peripheral (TPH1) and neuronal (TPH2) enzymes. This family of enzymes shares a common catalytic mechanism, in which dioxygen is used by an active site containing a single, reduced iron atom to hydroxylate an unactivated aromatic substrate, concomitant with a two-electron oxidation of tetrahydropterin (BH4) cofactor to its quinonoid dihydropterin form. PAH catalyzes the hydroxylation of L-Phe to L-Tyr, the first step in the catabolic degradation of L-Phe; TH catalyses the hydroxylation of L-Tyr to 3,4-dihydroxyphenylalanine, the rate limiting step in the biosynthesis of catecholamines; and TPH catalyses the hydroxylation of L-Trp to 5-hydroxytryptophan, the rate limiting step in the biosynthesis of 5-hydroxy

>COG0440 IlvH Acetolactate synthase, small (regulatory) subunit [Amino acid transport and metabolism]

Probab=93.49  E-value=0.31  Score=38.03  Aligned_cols=68  Identities=12%  Similarity=0.290  Sum_probs=46.2

Q ss_pred             EEEEEEecCcchHHHHHHHHHHhCCccEEEEEEEecCCeEEEEEEEEeCCCCCChHHHHHHHHHHHHHcCC
Q 028501          130 SLLYIETADRPGLLVEIMKIIADVNVDVESAEIDTEGLVAKDKFHVSYGGAALNSSLSQVLVNCLRYYLRR  200 (208)
Q Consensus       130 ~~i~v~~~Dr~GlL~~i~~~l~~~~i~I~~a~i~t~~~~~~~~f~v~~~g~~~~~~~~~~l~~~l~~~l~~  200 (208)
                      ..+.+.-.|.||.|..++..|+..|.||.+..+............+.-.|   ++...+++.+.|...++.
T Consensus         5 rilsvlv~ne~GvLsRv~glfsrRG~NIeSltv~~tE~~~~SRiTivv~g---~~~~~EQi~kQL~kLidV   72 (163)
T COG0440           5 RILSLLVENEPGVLSRVTGLFSRRGYNIESLTVGPTETPGLSRITIVVSG---DEQVLEQIIKQLNKLIDV   72 (163)
T ss_pred             EEEEEEEECCCCeeehhhHHHHhcCcccceEEEEecCCCCceEEEEEEcC---CcchHHHHHHHHHhhccc
Confidence            46788889999999999999999999999999876544433333332233   122345555555554443

>TIGR00719 sda_beta L-serine dehydratase, iron-sulfur-dependent, beta subunit

Probab=93.30  E-value=0.75  Score=37.32  Aligned_cols=44  Identities=11%  Similarity=0.287  Sum_probs=36.7

Q ss_pred             CCeEEEEEEeCCcccHHHHHHHHHHHCCceEEEEEEEecCC--eeE
Q 028501           12 SDATIVQLSFGDRLGALIDTMNALKDLGLDVAKGTVNTEGS--VKQ   55 (208)
Q Consensus        12 ~~~~~v~v~~~DrpGLl~~i~~~L~~~gl~I~~a~i~t~~~--~~~   55 (208)
                      .....+.+.-.|+||.+..++..|.++|+||...++.....  .++
T Consensus       146 ~~g~~L~~~~~D~PG~Ig~vg~~Lg~~~iNIa~m~v~r~~~g~~Ai  191 (208)
T TIGR00719       146 GEHPAILLEHNDKFGTIAGVANLLAGFEINIEHLETAKKDIGNIAL  191 (208)
T ss_pred             CCccEEEEEeCCCCChHHHHHHHHHhCCccEEEEEEEecCCCCEEE
Confidence            34456777789999999999999999999999999988653  454

This family of enzymes is not homologous to the pyridoxal phosphate-dependent threonine deaminases and eukaryotic serine deaminases.

>PRK06349 homoserine dehydrogenase; Provisional

Probab=93.23  E-value=0.48  Score=42.61  Aligned_cols=51  Identities=25%  Similarity=0.347  Sum_probs=40.9

Q ss_pred             CCeEEEEEEecCcchHHHHHHHHHHhCCccEEEEEEEecCCeEEEEEEEEe
Q 028501          127 PKRSLLYIETADRPGLLVEIMKIIADVNVDVESAEIDTEGLVAKDKFHVSY  177 (208)
Q Consensus       127 ~~~~~i~v~~~Dr~GlL~~i~~~l~~~~i~I~~a~i~t~~~~~~~~f~v~~  177 (208)
                      ...+.+.+...|+||.|++|+..|+++|++|.++......+....++.+++
T Consensus       346 ~~~yylRl~v~d~pGvLa~I~~~f~~~~vsI~si~q~~~~~~~~~ivivT~  396 (426)
T PRK06349        346 ESKYYLRLLVADKPGVLAKIAAIFAENGISIESILQKGAGGEGAEIVIVTH  396 (426)
T ss_pred             ceeEEEEEEecCCcchHHHHHHHHhhcCccEEEEEeccCCCCceeEEEEEE
Confidence            346889999999999999999999999999999877654334445566664

>PLN02317 arogenate dehydratase

Probab=93.21  E-value=0.64  Score=41.25  Aligned_cols=53  Identities=13%  Similarity=0.270  Sum_probs=43.4

Q ss_pred             eEEEEEEecCcchHHHHHHHHHHhCCccEEEEEEEecCCe---------------EEEEEEEEeCCCC
Q 028501          129 RSLLYIETADRPGLLVEIMKIIADVNVDVESAEIDTEGLV---------------AKDKFHVSYGGAA  181 (208)
Q Consensus       129 ~~~i~v~~~Dr~GlL~~i~~~l~~~~i~I~~a~i~t~~~~---------------~~~~f~v~~~g~~  181 (208)
                      .+.|-+.-.|+||.|+++..+|+.+|||+.++..-....+               ..=.|||+-+|..
T Consensus       283 KTSivfsl~~~pG~L~k~L~~Fa~~~INLtkIESRP~~~~~~~~~~~~~~~~~~~~eY~FyVD~eg~~  350 (382)
T PLN02317        283 KTSIVFSLEEGPGVLFKALAVFALRDINLTKIESRPQRKRPLRVVDDSNSGTAKYFDYLFYVDFEASM  350 (382)
T ss_pred             cEEEEEEcCCCCchHHHHHHHHHHCCCCEEEEEeeecCCCCccccccccccccccccEEEEEEEEcCc
Confidence            4777777789999999999999999999999998876554               2237888767765

>TIGR00657 asp_kinases aspartate kinase

Probab=92.97  E-value=4.9  Score=36.23  Aligned_cols=109  Identities=17%  Similarity=0.228  Sum_probs=65.5

Q ss_pred             CCeEEEEEEeCC-c-ccHHHHHHHHHHHCCceEEEEEEEecCCeeEEEEEEeeCCCCCCCCCHHHHHHHHHHHHHhhccC
Q 028501           12 SDATIVQLSFGD-R-LGALIDTMNALKDLGLDVAKGTVNTEGSVKQTKFFITRLDTGRKVEDPDLLERIRLTIINNLLKY   89 (208)
Q Consensus        12 ~~~~~v~v~~~D-r-pGLl~~i~~~L~~~gl~I~~a~i~t~~~~~~d~F~v~~~~~g~~~~~~~~~~~l~~~L~~~l~~~   89 (208)
                      ++...|+|.+.+ . +|.++++.+.|.++|++|......+....+  .|.+...          ..++..+.|...... 
T Consensus       300 ~~v~~Isv~g~~~~~~g~la~if~~L~~~~I~I~~i~q~~se~sI--s~~I~~~----------~~~~a~~~L~~~~~~-  366 (441)
T TIGR00657       300 RNQARVTVSGLGMKGPGFLARVFGALAEAGINVDLITQSSSETSI--SFTVDKE----------DADQAKTLLKSELNL-  366 (441)
T ss_pred             CCEEEEEEECCCCCCccHHHHHHHHHHHcCCeEEEEEecCCCceE--EEEEEHH----------HHHHHHHHHHHHHHh-
Confidence            345677777643 3 799999999999999999855422222121  3545322          112222223221100 


Q ss_pred             CCCchhhhhccccccCCCCCcccCCccccEEEEecCCCCeEEEEEEec---CcchHHHHHHHHHHhCCccEEEEE
Q 028501           90 HPESSEQLAMGEAFGIKAPEKKLDVDIATHIHVKEDGPKRSLLYIETA---DRPGLLVEIMKIIADVNVDVESAE  161 (208)
Q Consensus        90 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~V~~~~~~~~~~~i~v~~~---Dr~GlL~~i~~~l~~~~i~I~~a~  161 (208)
                        .             .          ...|.+..   +...+.+.|.   ++||+++++.++|++.|+||....
T Consensus       367 --~-------------~----------~~~I~~~~---~~a~VsvvG~~~~~~~g~~a~if~~La~~~Inv~~i~  413 (441)
T TIGR00657       367 --S-------------A----------LSSVEVEK---GLAKVSLVGAGMKSAPGVASKIFEALAQNGINIEMIS  413 (441)
T ss_pred             --c-------------C----------cceEEEcC---CeEEEEEEcCCCCCCCchHHHHHHHHHHCCCCEEEEE
Confidence              0             0          01122222   3367777654   789999999999999999998776

The Lys-sensitive enzyme of Bacillus subtilis resembles the E. coli form but is an alpha 2/beta 2 heterotetramer, where the beta subunit is translated from an in-phase alternative initiator at Met-246. This may be a feature of a number of closely related forms, including a paralog from B. subtilis.

>PRK06382 threonine dehydratase; Provisional

Probab=92.92  E-value=0.99  Score=40.31  Aligned_cols=66  Identities=20%  Similarity=0.277  Sum_probs=44.9

Q ss_pred             CCeEEEEEEeCCcccHHHHHHHHHHHCCceEEEEEEEe----cCC-eeEEEEEEeeCCCCCCCCCHHHHHHHHHHHHH
Q 028501           12 SDATIVQLSFGDRLGALIDTMNALKDLGLDVAKGTVNT----EGS-VKQTKFFITRLDTGRKVEDPDLLERIRLTIIN   84 (208)
Q Consensus        12 ~~~~~v~v~~~DrpGLl~~i~~~L~~~gl~I~~a~i~t----~~~-~~~d~F~v~~~~~g~~~~~~~~~~~l~~~L~~   84 (208)
                      ...+.+.|.-+|+||-|.+++..|.++|+||.+.....    ... ...-+|.|...       +++..+.|.+.|++
T Consensus       328 ~~~~rl~v~v~D~pG~L~~l~~ii~~~~~nI~~v~~~~~~~~~~~~~~~v~i~vet~-------~~~~~~~v~~~L~~  398 (406)
T PRK06382        328 GQLVRIECNIPDRPGNLYRIANAIASNGGNIYHAEVDNLRKETPPGFQSVTFTVNVR-------GQDHLDRILNALRE  398 (406)
T ss_pred             CCEEEEEEEcCCCCCHHHHHHHHHhcCCCcEEEEEEeeccccCCCCcEEEEEEEEeC-------CHHHHHHHHHHHHH
Confidence            34578999999999999999999999999999766542    222 33334555432       12444566666655

>PRK07431 aspartate kinase; Provisional

Probab=92.82  E-value=8.4  Score=36.09  Aligned_cols=111  Identities=16%  Similarity=0.231  Sum_probs=67.0

Q ss_pred             CCeEEEEEE-eCCcccHHHHHHHHHHHCCceEEEEEEEecCC--eeEE-EEEEeeCCCCCCCCCHHHHHHHHHHHHHhhc
Q 028501           12 SDATIVQLS-FGDRLGALIDTMNALKDLGLDVAKGTVNTEGS--VKQT-KFFITRLDTGRKVEDPDLLERIRLTIINNLL   87 (208)
Q Consensus        12 ~~~~~v~v~-~~DrpGLl~~i~~~L~~~gl~I~~a~i~t~~~--~~~d-~F~v~~~~~g~~~~~~~~~~~l~~~L~~~l~   87 (208)
                      ++...|++. .++.+|+++++.+.|.++|++|..-......+  +..+ .|.+...          .+.+....+++ +.
T Consensus       437 ~~~~~i~l~~~~~~~g~~a~if~~l~~~~i~id~i~~~~~~~~~~~~~isf~v~~~----------~~~~~~~~l~~-l~  505 (587)
T PRK07431        437 RNQAQLAIRNVPDRPGMAASIFGALAEANISVDMIVQSQRCRSDGTRDISFTVPKE----------DREAAQKVLRE-LA  505 (587)
T ss_pred             CCEEEEEECCCCCCccHHHHHHHHHHHcCCeEEEEEecCCCCCCCceeEEEEEcHH----------HHHHHHHHHHH-HH
Confidence            345566665 47889999999999999999999443321112  1122 2444321          22233333333 21


Q ss_pred             cCCCCchhhhhccccccCCCCCcccCCccccEEEEecCCCCeEEEEEEec---CcchHHHHHHHHHHhCCccEEEEE
Q 028501           88 KYHPESSEQLAMGEAFGIKAPEKKLDVDIATHIHVKEDGPKRSLLYIETA---DRPGLLVEIMKIIADVNVDVESAE  161 (208)
Q Consensus        88 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~V~~~~~~~~~~~i~v~~~---Dr~GlL~~i~~~l~~~~i~I~~a~  161 (208)
                      ...+                         ...+.+..   +...|.+.|.   .+||+++++.++|++.|+++....
T Consensus       506 ~~~~-------------------------~~~i~~~~---~va~VSvVG~gm~~~~gv~~ri~~aL~~~~I~v~~i~  554 (587)
T PRK07431        506 KQLP-------------------------GAEVEDGP---AIAKVSIVGAGMPGTPGVAARMFRALADAGINIEMIA  554 (587)
T ss_pred             HhcC-------------------------CceEEEeC---CeEEEEEECCCccCCcCHHHHHHHHHHHCCCcEEEee
Confidence            1000                         00122222   3467888886   889999999999999999997666

>TIGR01268 Phe4hydrox_tetr phenylalanine-4-hydroxylase, tetrameric form

Probab=92.82  E-value=0.73  Score=41.54  Aligned_cols=53  Identities=19%  Similarity=0.316  Sum_probs=43.6

Q ss_pred             eEEEEEEecCcchHHHHHHHHHHhCCccEEEEEEEecCCeEE-EEEEEEeCCCC
Q 028501          129 RSLLYIETADRPGLLVEIMKIIADVNVDVESAEIDTEGLVAK-DKFHVSYGGAA  181 (208)
Q Consensus       129 ~~~i~v~~~Dr~GlL~~i~~~l~~~~i~I~~a~i~t~~~~~~-~~f~v~~~g~~  181 (208)
                      .+.|-+...|+||-|+++...|+++|+|+.++..-....... -.|+|+-+|..
T Consensus        16 KTSLiFsL~d~pGaL~~vL~vFa~~gINLthIESRPsk~~~~eY~FFVD~eg~~   69 (436)
T TIGR01268        16 KTSLIFSLKEEAGALAETLKLFQAHDVNLTHIESRPSKTHPGEYEFFVEFDEAS   69 (436)
T ss_pred             eEEEEEEcCCCCcHHHHHHHHHHHCCCCeeEEecccCCCCCccEEEEEEEecCc
Confidence            567777779999999999999999999999999887655433 47888866765

The member of this family from Drosophila has been described as having both phenylalanine-4-hydroxylase and tryptophan 5-monoxygenase activity (PubMed:1371286). However, a Drosophila member of the tryptophan 5-monoxygenase clade has subsequently been discovered.

>KOG2663 consensus Acetolactate synthase, small subunit [Amino acid transport and metabolism]

Probab=92.69  E-value=0.35  Score=40.35  Aligned_cols=48  Identities=10%  Similarity=0.138  Sum_probs=39.5

Q ss_pred             eEEEEEEeCCcccHHHHHHHHHHHCCceEEEEEEEecCCeeEE--EEEEe
Q 028501           14 ATIVQLSFGDRLGALIDTMNALKDLGLDVAKGTVNTEGSVKQT--KFFIT   61 (208)
Q Consensus        14 ~~~v~v~~~DrpGLl~~i~~~L~~~gl~I~~a~i~t~~~~~~d--~F~v~   61 (208)
                      ...+.+...|-||.+.+|+++|+..|+||.+--+--+.+..+-  +.+++
T Consensus        77 rHvinclVqnEpGvlsRisGvlAaRGfNIdSLvVc~tevk~LsrmTIVl~  126 (309)
T KOG2663|consen   77 RHVINCLVQNEPGVLSRISGVLAARGFNIDSLVVCLTEVKALSRMTIVLQ  126 (309)
T ss_pred             ceeEEEEecCCchHHHHHHHHHHhccCCchheeeechhhhhhhhceEEEe
Confidence            4578999999999999999999999999998887776666543  44555

>cd04898 ACT_ACR-like_4 ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein)

Probab=92.64  E-value=0.22  Score=33.67  Aligned_cols=66  Identities=17%  Similarity=0.160  Sum_probs=43.5

Q ss_pred             EEEEeCCcccHHHHHHHHHHHCCceEEEEEEEecC--Cee--EEEEEEeeCCCCCCCCCHHHHHHHHHHHHH
Q 028501           17 VQLSFGDRLGALIDTMNALKDLGLDVAKGTVNTEG--SVK--QTKFFITRLDTGRKVEDPDLLERIRLTIIN   84 (208)
Q Consensus        17 v~v~~~DrpGLl~~i~~~L~~~gl~I~~a~i~t~~--~~~--~d~F~v~~~~~g~~~~~~~~~~~l~~~L~~   84 (208)
                      |.+.++-||-.|++++-+|..+|+-|.+|+|....  +.-  +-.|.+.+.  +..+........+.+.+..
T Consensus         3 VElsGkGRPrVfyDvTlALK~L~i~IFsaeIgR~~~~~r~wEvyR~LL~e~--~~~~~~~~~r~~i~drv~~   72 (77)
T cd04898           3 VELSGKGRPRVFYDITLALKKLGICIFSAEIGRHSTGDRQWEVYRVLLLEH--DRLKLGGRQRSKVVDRVTK   72 (77)
T ss_pred             ccccCCCCcceeeehHHHHHHhccEEEehhhhhhhcCCeeEEEEEEeecCC--CccccchHHHHHHHHHHHH
Confidence            56788999999999999999999999999996543  221  223444333  3334333334555555444

This CD includes the C-terminal ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) have been described, however, the ACR-like sequences in this CD are distinct from those characterized. This CD includes the Oryza sativa ACR-like protein (Os05g0113000) encoded on chromosome 5 and the Arabidopsis thaliana predicted gene product, At2g39570. Members of this CD belong to the superfamily of ACT regulatory domains.

>PRK09084 aspartate kinase III; Validated

Probab=92.63  E-value=5.4  Score=36.19  Aligned_cols=102  Identities=13%  Similarity=0.144  Sum_probs=61.1

Q ss_pred             CCeEEEEEEeC---CcccHHHHHHHHHHHCCceEEEEEEEecCCeeEEEEEEeeCCCCCCCCCHHHHHHHHHHHHHhhcc
Q 028501           12 SDATIVQLSFG---DRLGALIDTMNALKDLGLDVAKGTVNTEGSVKQTKFFITRLDTGRKVEDPDLLERIRLTIINNLLK   88 (208)
Q Consensus        12 ~~~~~v~v~~~---DrpGLl~~i~~~L~~~gl~I~~a~i~t~~~~~~d~F~v~~~~~g~~~~~~~~~~~l~~~L~~~l~~   88 (208)
                      ++...|+|.+.   +.+|.++++...|.++|++|.--.  +....+  +|.+...+  ..   ......+...+.+.+..
T Consensus       304 ~~i~lItv~~~~~~~~~g~~a~if~~l~~~~I~Vd~I~--sse~sI--s~~i~~~~--~~---~~~~~~~~~~l~~el~~  374 (448)
T PRK09084        304 RNQTLLTLHSLNMLHARGFLAEVFGILARHKISVDLIT--TSEVSV--SLTLDTTG--ST---STGDTLLTQALLTELSQ  374 (448)
T ss_pred             CCEEEEEEecCCCCccccHHHHHHHHHHHcCCeEEEEe--ccCcEE--EEEEechh--hh---hhhhHHHHHHHHHHHhc
Confidence            45667888754   689999999999999999999443  332222  36665331  10   01111222222222211


Q ss_pred             CCCCchhhhhccccccCCCCCcccCCccccEEEEecCCCCeEEEEEEec---CcchHHHHHHHHHHhC
Q 028501           89 YHPESSEQLAMGEAFGIKAPEKKLDVDIATHIHVKEDGPKRSLLYIETA---DRPGLLVEIMKIIADV  153 (208)
Q Consensus        89 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~V~~~~~~~~~~~i~v~~~---Dr~GlL~~i~~~l~~~  153 (208)
                                               +   .+|.+.+   +...|.+.|.   ++||+++++..+|++.
T Consensus       375 -------------------------~---~~i~~~~---~va~IsvvG~gm~~~~gv~arif~aL~~~  411 (448)
T PRK09084        375 -------------------------L---CRVEVEE---GLALVALIGNNLSKACGVAKRVFGVLEPF  411 (448)
T ss_pred             -------------------------C---CeEEEEC---CeEEEEEECCCcccCcChHHHHHHHHHhC
Confidence                                     0   1133322   3467888776   7899999999999874

>cd04906 ACT_ThrD-I_1 First of two tandem C-terminal ACT domains of threonine dehydratase I (ThrD-I; L-threonine hydrolyase)

Probab=92.57  E-value=0.68  Score=31.83  Aligned_cols=32  Identities=19%  Similarity=0.379  Sum_probs=25.9

Q ss_pred             EEEEEecCcchHHHHHHHHHHhCCccEEEEEEEe
Q 028501          131 LLYIETADRPGLLVEIMKIIADVNVDVESAEIDT  164 (208)
Q Consensus       131 ~i~v~~~Dr~GlL~~i~~~l~~~~i~I~~a~i~t  164 (208)
                      ++.+.-+|+||-|++++.+|+  +.||....-..
T Consensus         3 vl~v~ipD~PG~L~~ll~~l~--~anI~~~~y~~   34 (85)
T cd04906           3 LLAVTIPERPGSFKKFCELIG--PRNITEFNYRY   34 (85)
T ss_pred             EEEEecCCCCcHHHHHHHHhC--CCceeEEEEEc
Confidence            578889999999999999999  66666555544

This CD includes the first of two tandem C-terminal ACT domains of threonine dehydratase I (ThrD-I; L-threonine hydrolyase) which catalyzes the committed step in branched chain amino acid biosynthesis in plants and microorganisms, the pyridoxal 5'-phosphate (PLP)-dependent dehydration/deamination of L-threonine (or L-serine) to 2-ketobutyrate (or pyruvate). ThrD-I is a cooperative, feedback-regulated (isoleucine and valine) allosteric enzyme that forms a tetramer and contains four pyridoxal phosphate moieties. Members of this CD belong to the superfamily of ACT regulatory domains.

>PRK06545 prephenate dehydrogenase; Validated

Probab=92.51  E-value=0.65  Score=40.71  Aligned_cols=50  Identities=10%  Similarity=0.088  Sum_probs=40.7

Q ss_pred             CCeEEEEEEeCCcccHHHHHHHHHHHCCceEEEEEEEecCCeeEEEEEEe
Q 028501           12 SDATIVQLSFGDRLGALIDTMNALKDLGLDVAKGTVNTEGSVKQTKFFIT   61 (208)
Q Consensus        12 ~~~~~v~v~~~DrpGLl~~i~~~L~~~gl~I~~a~i~t~~~~~~d~F~v~   61 (208)
                      +.+..|.|.-+|+||-+++++..|...|+||.+-+|....+...-++.+.
T Consensus       288 ~~~~~~~v~v~d~pg~~~~~~~~~~~~~i~i~~~~i~~~~~~~~g~~~~~  337 (359)
T PRK06545        288 PSFYDLYVDVPDEPGVIARVTAILGEEGISIENLRILEAREDIHGVLQIS  337 (359)
T ss_pred             CcceEEEEeCCCCCCHHHHHHHHHHHcCCCeecceeeeccCCcCceEEEE
Confidence            35678999999999999999999999999999999977665433334443

>PRK08198 threonine dehydratase; Provisional

Probab=92.39  E-value=1.8  Score=38.47  Aligned_cols=37  Identities=19%  Similarity=0.314  Sum_probs=32.7

Q ss_pred             CeEEEEEEeCCcccHHHHHHHHHHHCCceEEEEEEEe
Q 028501           13 DATIVQLSFGDRLGALIDTMNALKDLGLDVAKGTVNT   49 (208)
Q Consensus        13 ~~~~v~v~~~DrpGLl~~i~~~L~~~gl~I~~a~i~t   49 (208)
                      ....+.|.-+|+||-|++++..+++.|.||.+.....
T Consensus       326 r~~~l~v~l~D~PG~L~~ll~~i~~~g~NI~~i~~~~  362 (404)
T PRK08198        326 RYLKLRVRLPDRPGQLAKLLSIIAELGANVIDVDHDR  362 (404)
T ss_pred             CEEEEEEEeCCCCCHHHHHHHHHhhCCCceEEEEEEE
Confidence            4458899999999999999999999999999877654

>PRK11790 D-3-phosphoglycerate dehydrogenase; Provisional

Probab=92.38  E-value=0.35  Score=43.33  Aligned_cols=46  Identities=15%  Similarity=0.258  Sum_probs=40.1

Q ss_pred             CeEEEEEEeCCcccHHHHHHHHHHHCCceEEEEEEEecCCeeEEEE
Q 028501           13 DATIVQLSFGDRLGALIDTMNALKDLGLDVAKGTVNTEGSVKQTKF   58 (208)
Q Consensus        13 ~~~~v~v~~~DrpGLl~~i~~~L~~~gl~I~~a~i~t~~~~~~d~F   58 (208)
                      +...|.+.-+|+||.++.|+..|+++|+||...+..+.++.++-+|
T Consensus       337 ~~~rlii~h~d~pG~ia~it~~l~~~~iNI~~m~~~~~~~~A~~ii  382 (409)
T PRK11790        337 GGHRLLHIHENRPGVLAAINQIFAEQGINIAAQYLQTDGEIGYVVI  382 (409)
T ss_pred             CCceEEEEeCCCCCHHHHHHHHHHhcCCCHHHheeccCCCEEEEEE
Confidence            5568888999999999999999999999999999988887775444

>PRK09224 threonine dehydratase; Reviewed

Probab=92.34  E-value=9.1  Score=35.29  Aligned_cols=129  Identities=14%  Similarity=0.199  Sum_probs=75.1

Q ss_pred             eEEEEEEeCCcccHHHHHHHHHHHCCceEEEEEEEecCCeeEEEEEEeeCCCCCCCCCHHHHHHHHHHHHHhhccCCCCc
Q 028501           14 ATIVQLSFGDRLGALIDTMNALKDLGLDVAKGTVNTEGSVKQTKFFITRLDTGRKVEDPDLLERIRLTIINNLLKYHPES   93 (208)
Q Consensus        14 ~~~v~v~~~DrpGLl~~i~~~L~~~gl~I~~a~i~t~~~~~~d~F~v~~~~~g~~~~~~~~~~~l~~~L~~~l~~~~~~~   93 (208)
                      -..+.|.-|||||-|..++..|.  +.||...+-...+.....+|+..... +.    +...+.|.+.|++.=-......
T Consensus       328 e~~l~v~iPerPGaL~~f~~~l~--~~nItef~yr~~~~~~a~V~vgie~~-~~----~~~~~~i~~~L~~~gy~~~~ls  400 (504)
T PRK09224        328 EALLAVTIPEEPGSFLKFCELLG--GRNVTEFNYRYADAKEAHIFVGVQLS-RG----QEERAEIIAQLRAHGYPVVDLS  400 (504)
T ss_pred             EEEEEEEeCCCCCHHHHHHHHhc--cCcEEEEEEEecCCCeEEEEEEEEeC-Ch----hhHHHHHHHHHHHcCCCeEECC
Confidence            45788889999999999999999  68888666554443334445443321 21    1236777777765110000000


Q ss_pred             hhhhh---ccccccCCCCCcccCCccccEEEEecCCCCeEEEEEEecCcchHHHHHHHHHHhCCccEEEEEEEecC
Q 028501           94 SEQLA---MGEAFGIKAPEKKLDVDIATHIHVKEDGPKRSLLYIETADRPGLLVEIMKIIADVNVDVESAEIDTEG  166 (208)
Q Consensus        94 ~~~l~---~~~~~~~~~~~~~~~~~~~~~V~~~~~~~~~~~i~v~~~Dr~GlL~~i~~~l~~~~i~I~~a~i~t~~  166 (208)
                      ...++   .|-+.+=+.                +...+...+.+.-+.|||-|.+....|. -+-||...+-...+
T Consensus       401 ~ne~~k~h~r~~~g~~~----------------~~~~~e~~~~~~fPerpGal~~Fl~~l~-~~~~It~f~Yr~~~  459 (504)
T PRK09224        401 DDELAKLHVRYMVGGRP----------------PKPLDERLYRFEFPERPGALLKFLSTLG-THWNISLFHYRNHG  459 (504)
T ss_pred             CCHHHHHHHHhccCCCC----------------CCCCceEEEEEeCCCCCCHHHHHHHhcC-CCCeeEEEEEccCC
Confidence            00111   010111010                0112346788999999999999999777 67788888875333

>cd04932 ACT_AKiii-LysC-EC_1 ACT domains located C-terminal to the catalytic domain of the lysine-sensitive aspartokinase isoenzyme AKIII

Probab=92.19  E-value=1.9  Score=28.95  Aligned_cols=38  Identities=16%  Similarity=0.257  Sum_probs=28.9

Q ss_pred             ecCcchHHHHHHHHHHhCCccEEEEEEEecCCeEEEEEEEEe
Q 028501          136 TADRPGLLVEIMKIIADVNVDVESAEIDTEGLVAKDKFHVSY  177 (208)
Q Consensus       136 ~~Dr~GlL~~i~~~l~~~~i~I~~a~i~t~~~~~~~~f~v~~  177 (208)
                      ..++||++++|..+|+++|++|..+..   ++ ..-.|.+..
T Consensus        11 ~~~~~g~~~~IF~~La~~~I~VDmI~~---s~-~~iSftv~~   48 (75)
T cd04932          11 MLHAQGFLAKVFGILAKHNISVDLITT---SE-ISVALTLDN   48 (75)
T ss_pred             CCCCcCHHHHHHHHHHHcCCcEEEEee---cC-CEEEEEEec
Confidence            468899999999999999999998853   22 333466653

This CD includes the first of two ACT domains located C-terminal to the catalytic domain of the lysine-sensitive aspartokinase isoenzyme AKIII, a monofunctional class enzyme found in bacteria (Escherichia coli (EC) LysC). Aspartokinase is the first enzyme in the aspartate metabolic pathway and catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. The E. coli AKIII (LysC) binds two feedback allosteric inhibitor lysine molecules at the dimer interface located between the ACT1 domain of two subunits. Members of this CD belong to the superfamily of ACT regulatory domains.

>COG0440 IlvH Acetolactate synthase, small (regulatory) subunit [Amino acid transport and metabolism]

Probab=92.17  E-value=0.73  Score=35.97  Aligned_cols=66  Identities=18%  Similarity=0.228  Sum_probs=47.3

Q ss_pred             EEEEEEeCCcccHHHHHHHHHHHCCceEEEEEEEecCCeeEEEEEEeeCCCCCCCCCHHHHHHHHHHHHHhh
Q 028501           15 TIVQLSFGDRLGALIDTMNALKDLGLDVAKGTVNTEGSVKQTKFFITRLDTGRKVEDPDLLERIRLTIINNL   86 (208)
Q Consensus        15 ~~v~v~~~DrpGLl~~i~~~L~~~gl~I~~a~i~t~~~~~~d~F~v~~~~~g~~~~~~~~~~~l~~~L~~~l   86 (208)
                      -.+.+.-.|.||.|+++++.|+..|+||.+-.+.-+.+.-+-...+.-.  |.    +...+++.+.|.+..
T Consensus         5 rilsvlv~ne~GvLsRv~glfsrRG~NIeSltv~~tE~~~~SRiTivv~--g~----~~~~EQi~kQL~kLi   70 (163)
T COG0440           5 RILSLLVENEPGVLSRVTGLFSRRGYNIESLTVGPTETPGLSRITIVVS--GD----EQVLEQIIKQLNKLI   70 (163)
T ss_pred             EEEEEEEECCCCeeehhhHHHHhcCcccceEEEEecCCCCceEEEEEEc--CC----cchHHHHHHHHHhhc
Confidence            4678888999999999999999999999988887665532322333222  32    245677877777744

>TIGR01127 ilvA_1Cterm threonine dehydratase, medium form

Probab=92.00  E-value=0.73  Score=40.63  Aligned_cols=35  Identities=23%  Similarity=0.423  Sum_probs=32.1

Q ss_pred             eEEEEEEecCcchHHHHHHHHHHhCCccEEEEEEE
Q 028501          129 RSLLYIETADRPGLLVEIMKIIADVNVDVESAEID  163 (208)
Q Consensus       129 ~~~i~v~~~Dr~GlL~~i~~~l~~~~i~I~~a~i~  163 (208)
                      ...+.|.-+|+||.|.++++.+++.|.||.++...
T Consensus       305 ~~~l~v~l~D~pG~L~~v~~~i~~~~~NI~~i~~~  339 (380)
T TIGR01127       305 KVRIETVLPDRPGALYHLLESIAEARANIVKIDHD  339 (380)
T ss_pred             EEEEEEEeCCCCCHHHHHHHHHhcCCCcEEEEEee
Confidence            46899999999999999999999999999998655

A form of threonine dehydratase with two copies of the C-terminal domain Pfam:PF00585 is described by TIGR01124. This model describes a phylogenetically distinct form with a single copy of pfam00585. This form branches with the catabolic threonine dehydratase of E. coli; many members are designated as catabolic for this reason. However, the catabolic form lacks any pfam00585 domain. Many members of this model are found in species with other Ile biosynthetic enzymes.

>PRK11899 prephenate dehydratase; Provisional

Probab=91.21  E-value=4  Score=34.74  Aligned_cols=64  Identities=19%  Similarity=0.287  Sum_probs=42.8

Q ss_pred             eEEEEEEeCCcccHHHHHHHHHHHCCceEEEEEEEecCCe-eEEEEEEeeCCCCCCCCCHHHHHHHHHHHHH
Q 028501           14 ATIVQLSFGDRLGALIDTMNALKDLGLDVAKGTVNTEGSV-KQTKFFITRLDTGRKVEDPDLLERIRLTIIN   84 (208)
Q Consensus        14 ~~~v~v~~~DrpGLl~~i~~~L~~~gl~I~~a~i~t~~~~-~~d~F~v~~~~~g~~~~~~~~~~~l~~~L~~   84 (208)
                      .+.+.+..+|+||.|+.+.+.|+..|+|+..-.-.=.++. +--.|+|.-.  |.. .+    ..++++|++
T Consensus       194 ktsl~~~~~~~pGaL~~vL~~Fa~~gINLtkIeSRP~~~~~~~Y~F~id~e--g~~-~d----~~v~~aL~~  258 (279)
T PRK11899        194 VTTFVFRVRNIPAALYKALGGFATNGVNMTKLESYMVGGSFTATQFYADIE--GHP-ED----RNVALALEE  258 (279)
T ss_pred             eEEEEEEeCCCCChHHHHHHHHHHcCCCeeeEEeeecCCCCceEEEEEEEE--CCC-CC----HHHHHHHHH
Confidence            4666666689999999999999999999994433333332 3345888654  653 33    234555554

>TIGR01270 Trp_5_monoox tryptophan 5-monooxygenase, tetrameric

Probab=91.00  E-value=1.3  Score=40.20  Aligned_cols=54  Identities=13%  Similarity=0.056  Sum_probs=44.3

Q ss_pred             CeEEEEEEecCcchHHHHHHHHHHhCCccEEEEEEEecCCeEE--EEEEEEeCCCC
Q 028501          128 KRSLLYIETADRPGLLVEIMKIIADVNVDVESAEIDTEGLVAK--DKFHVSYGGAA  181 (208)
Q Consensus       128 ~~~~i~v~~~Dr~GlL~~i~~~l~~~~i~I~~a~i~t~~~~~~--~~f~v~~~g~~  181 (208)
                      ..+.|-+.-.|+||-|+++.+.|+++|+|+.++..-.......  -.|+|+-+|..
T Consensus        30 ~ktSLIFsL~d~pGaL~~vL~vFa~~gINLThIESRPsk~~~~e~Y~FfVD~Eg~~   85 (464)
T TIGR01270        30 QRLSIIFSLSNVVGDLSKAIAIFQDRHINILHLESRDSKDGTSKTMDVLVDVELFH   85 (464)
T ss_pred             ceEEEEEECCCCchHHHHHHHHHHHCCCCEEEEECCcCCCCCCccEEEEEEEEcCH
Confidence            4577777779999999999999999999999999988765544  46888766654

This model describes tryptophan 5-monooxygenase, a member of the family of tetrameric, biopterin-dependent aromatic amino acid hydroxylases found in metazoans. It is closely related to tetrameric phenylalanine-4-hydroxylase and tyrosine 3-monooxygenase, and more distantly related to the monomeric phenylalanine-4-hydroxylase found in some Gram-negative bacteria.

>cd04935 ACT_AKiii-DAPDC_1 ACT domains of a bifunctional AKIII (LysC)-like aspartokinase/meso-diaminopimelate decarboxylase (DAPDC) bacterial protein

Probab=90.61  E-value=2.7  Score=28.22  Aligned_cols=56  Identities=13%  Similarity=0.183  Sum_probs=37.0

Q ss_pred             cCcchHHHHHHHHHHhCCccEEEEEEEecCCeEEEEEEEEeCCCCCChHHHHHHHHHHHH
Q 028501          137 ADRPGLLVEIMKIIADVNVDVESAEIDTEGLVAKDKFHVSYGGAALNSSLSQVLVNCLRY  196 (208)
Q Consensus       137 ~Dr~GlL~~i~~~l~~~~i~I~~a~i~t~~~~~~~~f~v~~~g~~~~~~~~~~l~~~l~~  196 (208)
                      .+.||++++|..+|+++|+++..+..   ++ ..-.|.+..+..-+.++..++|.+.|..
T Consensus        12 ~~~~g~~~~IF~~La~~~I~vDmI~~---s~-~~isftv~~~~~~~~~~~~~~l~~el~~   67 (75)
T cd04935          12 WQQVGFLADVFAPFKKHGVSVDLVST---SE-TNVTVSLDPDPNGLDPDVLDALLDDLNQ   67 (75)
T ss_pred             CCccCHHHHHHHHHHHcCCcEEEEEe---CC-CEEEEEEeCcccccchHHHHHHHHHHHh
Confidence            47799999999999999999998853   22 3334666543211334344566666554

This CD includes the first of two ACT domains of a bifunctional AKIII (LysC)-like aspartokinase/meso-diaminopimelate decarboxylase (DAPDC) bacterial protein. Aspartokinase (AK) is the first enzyme in the aspartate metabolic pathway and catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. The lysA gene encodes the enzyme DAPDC, a pyridoxal-5'-phosphate (PLP)-dependent enzyme which catalyzes the final step in the lysine biosynthetic pathway converting meso-diaminopimelic acid (DAP) to l-lysine. Tandem ACT domains are positioned centrally with the AK catalytic domain N-terminal and the DAPDC domains C-terminal. Members of this CD belong to the superfamily of ACT regulatory domains.

>COG2150 Predicted regulator of amino acid metabolism, contains ACT domain [General function prediction only]

Probab=90.16  E-value=1.1  Score=34.91  Aligned_cols=34  Identities=24%  Similarity=0.422  Sum_probs=28.4

Q ss_pred             EEEEEEecCcchHHHHHHHHHHhCCccEEEEEEE
Q 028501          130 SLLYIETADRPGLLVEIMKIIADVNVDVESAEID  163 (208)
Q Consensus       130 ~~i~v~~~Dr~GlL~~i~~~l~~~~i~I~~a~i~  163 (208)
                      ..+..+-.+.||+++.++..++++||+|..+-..
T Consensus        96 iei~~~~~~~pgi~A~V~~~iak~gi~Irqi~~~  129 (167)
T COG2150          96 IEIYPEDARYPGILAGVASLIAKRGISIRQIISE  129 (167)
T ss_pred             EEEEeccCCCccHHHHHHHHHHHcCceEEEEecC
Confidence            4455556788999999999999999999988754

>TIGR01127 ilvA_1Cterm threonine dehydratase, medium form

Probab=90.12  E-value=3.2  Score=36.60  Aligned_cols=34  Identities=18%  Similarity=0.294  Sum_probs=30.4

Q ss_pred             EEEEEEeCCcccHHHHHHHHHHHCCceEEEEEEE
Q 028501           15 TIVQLSFGDRLGALIDTMNALKDLGLDVAKGTVN   48 (208)
Q Consensus        15 ~~v~v~~~DrpGLl~~i~~~L~~~gl~I~~a~i~   48 (208)
                      ..+.|.-+|+||.|+++++.+++.|.||.+-.-.
T Consensus       306 ~~l~v~l~D~pG~L~~v~~~i~~~~~NI~~i~~~  339 (380)
T TIGR01127       306 VRIETVLPDRPGALYHLLESIAEARANIVKIDHD  339 (380)
T ss_pred             EEEEEEeCCCCCHHHHHHHHHhcCCCcEEEEEee
Confidence            4788999999999999999999999999976544

A form of threonine dehydratase with two copies of the C-terminal domain Pfam:PF00585 is described by TIGR01124. This model describes a phylogenetically distinct form with a single copy of pfam00585. This form branches with the catabolic threonine dehydratase of E. coli; many members are designated as catabolic for this reason. However, the catabolic form lacks any pfam00585 domain. Many members of this model are found in species with other Ile biosynthetic enzymes.

>PRK12483 threonine dehydratase; Reviewed

Probab=90.07  E-value=16  Score=33.93  Aligned_cols=137  Identities=10%  Similarity=0.144  Sum_probs=73.1

Q ss_pred             CeEEEEEEeCCcccHHHHHHHHHHHCCceEEEEEEEecCCeeEEEEEEeeCCCCCCCCCHHHH-HHHHHHHHHhhccCCC
Q 028501           13 DATIVQLSFGDRLGALIDTMNALKDLGLDVAKGTVNTEGSVKQTKFFITRLDTGRKVEDPDLL-ERIRLTIINNLLKYHP   91 (208)
Q Consensus        13 ~~~~v~v~~~DrpGLl~~i~~~L~~~gl~I~~a~i~t~~~~~~d~F~v~~~~~g~~~~~~~~~-~~l~~~L~~~l~~~~~   91 (208)
                      ....+.|.-+||||-|.+++..|...  ||.+..-......-..+++.....      +++.. +.|.+.|++.=-.-..
T Consensus       344 r~~~~~v~~~d~pG~l~~~~~~l~~~--ni~~~~~~~~~~~~~~v~v~ie~~------~~~~~~~~i~~~l~~~g~~~~d  415 (521)
T PRK12483        344 REAIIAVTIPEQPGSFKAFCAALGKR--QITEFNYRYADAREAHLFVGVQTH------PRHDPRAQLLASLRAQGFPVLD  415 (521)
T ss_pred             CEEEEEEEeCCCCCHHHHHHHHhhhc--CeEEEEEEecCCCeeEEEEEEEeC------ChhhhHHHHHHHHHHCCCCeEE
Confidence            34578888999999999999999988  887665554333323333333321      12343 6666666551100000


Q ss_pred             CchhhhhccccccCCCCCcccCCccccEEEEecC-CCCeEEEEEEecCcchHHHHHHHHHHhCCccEEEEEEEecCCeEE
Q 028501           92 ESSEQLAMGEAFGIKAPEKKLDVDIATHIHVKED-GPKRSLLYIETADRPGLLVEIMKIIADVNVDVESAEIDTEGLVAK  170 (208)
Q Consensus        92 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~V~~~~~-~~~~~~i~v~~~Dr~GlL~~i~~~l~~~~i~I~~a~i~t~~~~~~  170 (208)
                      .....+++     .+.    +++ +.-+    .. ......+.+.-+.|||-|..+++.|... .||...+=--.+....
T Consensus       416 lsdne~~k-----~h~----r~~-~g~~----~~~~~~E~~~~v~iPE~pGa~~~f~~~l~~~-~niTeF~YR~~~~~~a  480 (521)
T PRK12483        416 LTDDELAK-----LHI----RHM-VGGR----APLAHDERLFRFEFPERPGALMKFLSRLGPR-WNISLFHYRNHGAADG  480 (521)
T ss_pred             CCCCHHHH-----HHH----Hhc-cCCC----CCCCCceEEEEEEcCCCCcHHHHHHHHhCCC-cceeeeeecCCCCCce
Confidence            00001110     000    011 0000    11 1224688899999999999999999853 3444444333344444


Q ss_pred             EE
Q 028501          171 DK  172 (208)
Q Consensus       171 ~~  172 (208)
                      .+
T Consensus       481 ~v  482 (521)
T PRK12483        481 RV  482 (521)
T ss_pred             EE
Confidence            44

>PRK07431 aspartate kinase; Provisional

Probab=90.03  E-value=17  Score=34.12  Aligned_cols=107  Identities=19%  Similarity=0.283  Sum_probs=66.0

Q ss_pred             EEEEE-eCCcccHHHHHHHHHHHCCceEEEEEEEecCC-eeEEEEEEeeCCCCCCCCCHHHHHHHHHHHHHhhccCCCCc
Q 028501           16 IVQLS-FGDRLGALIDTMNALKDLGLDVAKGTVNTEGS-VKQTKFFITRLDTGRKVEDPDLLERIRLTIINNLLKYHPES   93 (208)
Q Consensus        16 ~v~v~-~~DrpGLl~~i~~~L~~~gl~I~~a~i~t~~~-~~~d~F~v~~~~~g~~~~~~~~~~~l~~~L~~~l~~~~~~~   93 (208)
                      .+++. ..+.+|++++|...|.++|++|.....+.... ..--.|.+...          .+.+..+.|.+ +..     
T Consensus       272 ~itl~~~~~~~g~~a~if~~l~~~~I~v~~i~qs~~~~~~~~isf~i~~~----------d~~~~~~~l~~-l~~-----  335 (587)
T PRK07431        272 KVALLRVPDRPGIAAQLFEELAAQGVNVDLIIQSIHEGNSNDIAFTVAEN----------ELKKAEAVAEA-IAP-----  335 (587)
T ss_pred             EEEEecCCCcccHHHHHHHHHHHcCCcEEEEEeccCCCCCccEEEEEeHH----------HHHHHHHHHHH-HHH-----
Confidence            44444 47889999999999999999999554332222 12223666432          12223333333 211     


Q ss_pred             hhhhhccccccCCCCCcccCCccccEEEEecCCCCeEEEEEEec---CcchHHHHHHHHHHhCCccEEEEE
Q 028501           94 SEQLAMGEAFGIKAPEKKLDVDIATHIHVKEDGPKRSLLYIETA---DRPGLLVEIMKIIADVNVDVESAE  161 (208)
Q Consensus        94 ~~~l~~~~~~~~~~~~~~~~~~~~~~V~~~~~~~~~~~i~v~~~---Dr~GlL~~i~~~l~~~~i~I~~a~  161 (208)
                        .+      . .           .+|.+.+   +...|.+.|.   +++|+++++..+|++.|++|....
T Consensus       336 --~~------~-~-----------~~i~~~~---~~a~IsvvG~gm~~~~gi~~ki~~aL~~~~I~i~~i~  383 (587)
T PRK07431        336 --AL------G-G-----------AEVLVET---NVAKLSISGAGMMGRPGIAAKMFDTLAEAGINIRMIS  383 (587)
T ss_pred             --Hc------C-C-----------CcEEEeC---CeEEEEEECCCcccCccHHHHHHHHHHHCCCcEEEEE
Confidence              00      0 0           1122222   3367888776   789999999999999999997666

>cd04930 ACT_TH ACT domain of the nonheme iron-dependent aromatic amino acid hydroxylase, tyrosine hydroxylases (TH)

Probab=89.56  E-value=3.3  Score=30.43  Aligned_cols=48  Identities=6%  Similarity=0.167  Sum_probs=35.1

Q ss_pred             eEEEEEEeCCcccHHHHHHHHHHHCCceEEEEEEEecCC--e-eEEEEEEeeC
Q 028501           14 ATIVQLSFGDRLGALIDTMNALKDLGLDVAKGTVNTEGS--V-KQTKFFITRL   63 (208)
Q Consensus        14 ~~~v~v~~~DrpGLl~~i~~~L~~~gl~I~~a~i~t~~~--~-~~d~F~v~~~   63 (208)
                      .+.+.+..+|+||-|+++...|+.+|+|+.  +|.+.+-  . .--.|+|.-.
T Consensus        41 ktSlifsl~~~pGsL~~iL~~Fa~~gINLt--~IESRP~~~~~~eY~FfIdie   91 (115)
T cd04930          41 KATLLFSLKEGFSSLSRILKVFETFEAKIH--HLESRPSRKEGGDLEVLVRCE   91 (115)
T ss_pred             cEEEEEEeCCCCcHHHHHHHHHHHCCCCEE--EEECCcCCCCCceEEEEEEEE
Confidence            355666669999999999999999999999  6655543  2 2223677544

ACT domain of the nonheme iron-dependent aromatic amino acid hydroxylase, tyrosine hydroxylases (TH). TH catalyses the hydroxylation of L-Tyr to 3,4-dihydroxyphenylalanine, the rate limiting step in the biosynthesis of catecholamines (dopamine, noradrenaline and adrenaline), functioning as hormones and neurotransmitters. The enzyme is not regulated by its amino acid substrate, but instead by phosphorylation at several serine residues located N-terminal of the ACT domain, and by feedback inhibition by catecholamines at the active site. Members of this CD belong to the superfamily of ACT regulatory domains.

>COG2150 Predicted regulator of amino acid metabolism, contains ACT domain [General function prediction only]

Probab=89.56  E-value=0.71  Score=35.85  Aligned_cols=34  Identities=9%  Similarity=0.055  Sum_probs=27.0

Q ss_pred             CeEEEEEEeCCcccHHHHHHHHHHHCCceEEEEE
Q 028501           13 DATIVQLSFGDRLGALIDTMNALKDLGLDVAKGT   46 (208)
Q Consensus        13 ~~~~v~v~~~DrpGLl~~i~~~L~~~gl~I~~a~   46 (208)
                      +..++.....+.||+++.+++.++++||+|.++-
T Consensus        94 gViei~~~~~~~pgi~A~V~~~iak~gi~Irqi~  127 (167)
T COG2150          94 GVIEIYPEDARYPGILAGVASLIAKRGISIRQII  127 (167)
T ss_pred             eEEEEEeccCCCccHHHHHHHHHHHcCceEEEEe
Confidence            3344444457899999999999999999999543

>PRK08198 threonine dehydratase; Provisional

Probab=89.32  E-value=1.9  Score=38.34  Aligned_cols=36  Identities=31%  Similarity=0.516  Sum_probs=33.4

Q ss_pred             eEEEEEEecCcchHHHHHHHHHHhCCccEEEEEEEe
Q 028501          129 RSLLYIETADRPGLLVEIMKIIADVNVDVESAEIDT  164 (208)
Q Consensus       129 ~~~i~v~~~Dr~GlL~~i~~~l~~~~i~I~~a~i~t  164 (208)
                      ...+.|.-+|+||-|..+...+++.|.||..+....
T Consensus       327 ~~~l~v~l~D~PG~L~~ll~~i~~~g~NI~~i~~~~  362 (404)
T PRK08198        327 YLKLRVRLPDRPGQLAKLLSIIAELGANVIDVDHDR  362 (404)
T ss_pred             EEEEEEEeCCCCCHHHHHHHHHhhCCCceEEEEEEE
Confidence            579999999999999999999999999999998764

>cd04932 ACT_AKiii-LysC-EC_1 ACT domains located C-terminal to the catalytic domain of the lysine-sensitive aspartokinase isoenzyme AKIII

Probab=88.92  E-value=5.3  Score=26.81  Aligned_cols=45  Identities=18%  Similarity=0.204  Sum_probs=31.6

Q ss_pred             EEEEEE---eCCcccHHHHHHHHHHHCCceEEEEEEEecCCeeEEEEEEeeC
Q 028501           15 TIVQLS---FGDRLGALIDTMNALKDLGLDVAKGTVNTEGSVKQTKFFITRL   63 (208)
Q Consensus        15 ~~v~v~---~~DrpGLl~~i~~~L~~~gl~I~~a~i~t~~~~~~d~F~v~~~   63 (208)
                      +.|+|.   .+++||+++++..+|+++|++|.  -|.+....+  +|.+...
T Consensus         2 ~~ItI~~~~~~~~~g~~~~IF~~La~~~I~VD--mI~~s~~~i--Sftv~~~   49 (75)
T cd04932           2 TLVTLKSPNMLHAQGFLAKVFGILAKHNISVD--LITTSEISV--ALTLDNT   49 (75)
T ss_pred             EEEEEecCCCCCCcCHHHHHHHHHHHcCCcEE--EEeecCCEE--EEEEecc
Confidence            355662   47889999999999999999999  444433222  3666543

This CD includes the first of two ACT domains located C-terminal to the catalytic domain of the lysine-sensitive aspartokinase isoenzyme AKIII, a monofunctional class enzyme found in bacteria (Escherichia coli (EC) LysC). Aspartokinase is the first enzyme in the aspartate metabolic pathway and catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. The E. coli AKIII (LysC) binds two feedback allosteric inhibitor lysine molecules at the dimer interface located between the ACT1 domain of two subunits. Members of this CD belong to the superfamily of ACT regulatory domains.

>cd04935 ACT_AKiii-DAPDC_1 ACT domains of a bifunctional AKIII (LysC)-like aspartokinase/meso-diaminopimelate decarboxylase (DAPDC) bacterial protein

Probab=88.65  E-value=4.7  Score=27.03  Aligned_cols=56  Identities=18%  Similarity=0.233  Sum_probs=36.3

Q ss_pred             CCcccHHHHHHHHHHHCCceEEEEEEEecCCeeEEEEEEeeCCCCCCCCCHHHHHHHHHHHHH
Q 028501           22 GDRLGALIDTMNALKDLGLDVAKGTVNTEGSVKQTKFFITRLDTGRKVEDPDLLERIRLTIIN   84 (208)
Q Consensus        22 ~DrpGLl~~i~~~L~~~gl~I~~a~i~t~~~~~~d~F~v~~~~~g~~~~~~~~~~~l~~~L~~   84 (208)
                      ++.||+++++.++|+++|+++.  -|.+..+.+  .|.+...  ..++.+ +.+..+.+.|++
T Consensus        12 ~~~~g~~~~IF~~La~~~I~vD--mI~~s~~~i--sftv~~~--~~~~~~-~~~~~l~~el~~   67 (75)
T cd04935          12 WQQVGFLADVFAPFKKHGVSVD--LVSTSETNV--TVSLDPD--PNGLDP-DVLDALLDDLNQ   67 (75)
T ss_pred             CCccCHHHHHHHHHHHcCCcEE--EEEeCCCEE--EEEEeCc--ccccch-HHHHHHHHHHHh
Confidence            6789999999999999999999  444433222  3666543  212322 355666666655

This CD includes the first of two ACT domains of a bifunctional AKIII (LysC)-like aspartokinase/meso-diaminopimelate decarboxylase (DAPDC) bacterial protein. Aspartokinase (AK) is the first enzyme in the aspartate metabolic pathway and catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. The lysA gene encodes the enzyme DAPDC, a pyridoxal-5'-phosphate (PLP)-dependent enzyme which catalyzes the final step in the lysine biosynthetic pathway converting meso-diaminopimelic acid (DAP) to l-lysine. Tandem ACT domains are positioned centrally with the AK catalytic domain N-terminal and the DAPDC domains C-terminal. Members of this CD belong to the superfamily of ACT regulatory domains.

>cd04890 ACT_AK-like_1 ACT domains found C-terminal to the catalytic domain of aspartokinase (AK; 4-L-aspartate-4-phosphotransferase)

Probab=88.64  E-value=3.4  Score=26.05  Aligned_cols=38  Identities=16%  Similarity=0.307  Sum_probs=27.7

Q ss_pred             CCcccHHHHHHHHHHHCCceEEEEEEEecCCeeEEEEEEeeC
Q 028501           22 GDRLGALIDTMNALKDLGLDVAKGTVNTEGSVKQTKFFITRL   63 (208)
Q Consensus        22 ~DrpGLl~~i~~~L~~~gl~I~~a~i~t~~~~~~d~F~v~~~   63 (208)
                      .+++|+.+++.++|.++|+++.-  +.+..+.+  +|++...
T Consensus        11 ~~~~~~~~~if~~l~~~~i~v~~--i~t~~~~i--s~~v~~~   48 (62)
T cd04890          11 NGEVGFLRKIFEILEKHGISVDL--IPTSENSV--TLYLDDS   48 (62)
T ss_pred             CcccCHHHHHHHHHHHcCCeEEE--EecCCCEE--EEEEehh
Confidence            47899999999999999999994  44433332  3666543

This CD includes the first of two ACT domains found C-terminal to the catalytic domain of aspartokinase (AK; 4-L-aspartate-4-phosphotransferase). AK catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP, and is the first enzyme in the pathway of the biosynthesis of the aspartate family of amino acids, lysine, threonine, methionine, and isoleucine. This CD, includes the first ACT domain of the Escherichia coli (EC) isoenzyme, AKIII (LysC) and the Arabidopsis isoenzyme, asparate kinase 1, both enzymes monofunctional and involved in lysine synthesis, as well as the the first ACT domain of Bacillus subtilis (BS) isoenzyme, AKIII (YclM), and of the Saccharomyces cerevisiae AK (Hom3). Also included are the first ACT domains of the Methylomicrobium alcaliphilum AK, the first enzyme of the ectoine biosynthetic pathway. Members of this CD bel

>COG4492 PheB ACT domain-containing protein [General function prediction only]

Probab=88.50  E-value=3  Score=31.51  Aligned_cols=56  Identities=16%  Similarity=0.176  Sum_probs=44.5

Q ss_pred             EecCC-CCeEEEEEEecCcchHHHHHHHHHHhCCccEEEEEEEe-cCCeEEEEEEEEe
Q 028501          122 VKEDG-PKRSLLYIETADRPGLLVEIMKIIADVNVDVESAEIDT-EGLVAKDKFHVSY  177 (208)
Q Consensus       122 ~~~~~-~~~~~i~v~~~Dr~GlL~~i~~~l~~~~i~I~~a~i~t-~~~~~~~~f~v~~  177 (208)
                      |+... ...+.+.+.-.||.|.|+++-.++++.++||..++-+- ..+++.-...+.-
T Consensus        64 f~~m~k~ri~TL~l~ledr~G~LS~vLd~iA~~~~nvLTI~Q~ipl~g~Anvtlsi~~  121 (150)
T COG4492          64 FYDMLKERIITLSLSLEDRVGILSDVLDVIAREEINVLTIHQTIPLQGRANVTLSIDT  121 (150)
T ss_pred             hhhcccceEEEEEEEEhhhhhhHHHHHHHHHHhCCcEEEEecccccCceeeEEEEEEc
Confidence            44433 34788999999999999999999999999999888653 5677766666653

>PRK08818 prephenate dehydrogenase; Provisional

Probab=88.42  E-value=1.6  Score=38.71  Aligned_cols=49  Identities=14%  Similarity=0.184  Sum_probs=37.8

Q ss_pred             eEEEEEEeC-CcccHHHHHHHHHHHCCceEEEEEEEecCCeeEEEEEEeeC
Q 028501           14 ATIVQLSFG-DRLGALIDTMNALKDLGLDVAKGTVNTEGSVKQTKFFITRL   63 (208)
Q Consensus        14 ~~~v~v~~~-DrpGLl~~i~~~L~~~gl~I~~a~i~t~~~~~~d~F~v~~~   63 (208)
                      .+.+.+.-+ |+||-|++++..|..+|+||..-.+.....+-.- |+|.-.
T Consensus       295 ~~~l~~~v~~d~pG~L~~vl~~la~~~INit~Ies~~~r~~~y~-f~i~~~  344 (370)
T PRK08818        295 PLTLSVYLPEDRPGSLRTLLHVFEQHGVNLSSIHSSRTPAGELH-FRIGFE  344 (370)
T ss_pred             ceEEEEECCCCCCChHHHHHHHHHHcCcccceEEEecccCceEE-EEEEEe
Confidence            456677776 9999999999999999999998887444444443 777654

>PRK08961 bifunctional aspartate kinase/diaminopimelate decarboxylase protein; Provisional

Probab=88.30  E-value=15  Score=36.17  Aligned_cols=104  Identities=13%  Similarity=0.164  Sum_probs=61.0

Q ss_pred             CCeEEEEEEe---CCcccHHHHHHHHHHHCCceEEEEEEEecCCeeEEEEEEeeCCCCCCCCCHHHHHHHHHHHHHhhcc
Q 028501           12 SDATIVQLSF---GDRLGALIDTMNALKDLGLDVAKGTVNTEGSVKQTKFFITRLDTGRKVEDPDLLERIRLTIINNLLK   88 (208)
Q Consensus        12 ~~~~~v~v~~---~DrpGLl~~i~~~L~~~gl~I~~a~i~t~~~~~~d~F~v~~~~~g~~~~~~~~~~~l~~~L~~~l~~   88 (208)
                      ++.+.|+|.+   .+.+|.++++.+.|.++|++|.-  |.+....+  +|.+...+  ... ....++.    +...+..
T Consensus       320 ~~v~lItv~~~~~~~~~g~~a~if~~la~~~I~Vd~--I~sse~si--s~~i~~~~--~~~-~~~~~~~----l~~~l~~  388 (861)
T PRK08961        320 NGIVLVSMETIGMWQQVGFLADVFTLFKKHGLSVDL--ISSSETNV--TVSLDPSE--NLV-NTDVLAA----LSADLSQ  388 (861)
T ss_pred             CCEEEEEEecCCccccccHHHHHHHHHHHcCCeEEE--EEcCCCEE--EEEEcccc--ccc-hHHHHHH----HHHHHhh
Confidence            3556778854   46899999999999999999983  34433222  25554321  100 0111222    2221211


Q ss_pred             CCCCchhhhhccccccCCCCCcccCCccccEEEEecCCCCeEEEEEEec---CcchHHHHHHHHHHhCCccE
Q 028501           89 YHPESSEQLAMGEAFGIKAPEKKLDVDIATHIHVKEDGPKRSLLYIETA---DRPGLLVEIMKIIADVNVDV  157 (208)
Q Consensus        89 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~V~~~~~~~~~~~i~v~~~---Dr~GlL~~i~~~l~~~~i~I  157 (208)
                        .                          .+|.+..   +...|.+.|.   .+||+++.+..+|++.|+++
T Consensus       389 --~--------------------------~~i~~~~---~va~ISvVG~gm~~~~gv~arif~aL~~~~I~~  429 (861)
T PRK08961        389 --I--------------------------CRVKIIV---PCAAVSLVGRGMRSLLHKLGPAWATFGAERVHL  429 (861)
T ss_pred             --c--------------------------CcEEEeC---CeEEEEEeCCCcccCcChHHHHHHHHhhcCeEE
Confidence              0                          0022222   2367778775   78999999999999977644

>COG0077 PheA Prephenate dehydratase [Amino acid transport and metabolism]

Probab=87.86  E-value=4.4  Score=34.47  Aligned_cols=63  Identities=17%  Similarity=0.327  Sum_probs=44.8

Q ss_pred             CeEEEEEEeCCcccHHHHHHHHHHHCCceEEEEEEEecCC--e-eEEEEEEeeCCCCCCCCCHHHHHHHHHHHHH
Q 028501           13 DATIVQLSFGDRLGALIDTMNALKDLGLDVAKGTVNTEGS--V-KQTKFFITRLDTGRKVEDPDLLERIRLTIIN   84 (208)
Q Consensus        13 ~~~~v~v~~~DrpGLl~~i~~~L~~~gl~I~~a~i~t~~~--~-~~d~F~v~~~~~g~~~~~~~~~~~l~~~L~~   84 (208)
                      ..|.+.+..+|+||-|+++.+.|+..|+|..  +|.+.+-  . ..-.|+|.-.  |.. .+    ..++++|++
T Consensus       193 ~kTsl~f~~~n~PGaL~~~L~~Fa~~gINlT--kIESRP~k~~~~~Y~F~iD~e--g~~-~~----~~v~~AL~e  258 (279)
T COG0077         193 EKTSLIFSVPNKPGALYKALGVFAKRGINLT--KIESRPLKTGLGEYLFFIDIE--GHI-DD----PLVKEALEE  258 (279)
T ss_pred             ceEEEEEEcCCCCchHHHHHHHHHHcCccee--eEeecccCCCCeeEEEEEEEe--cCc-Cc----HhHHHHHHH
Confidence            3677778888999999999999999999998  6655443  2 2345777654  663 22    345566655

>PRK06349 homoserine dehydrogenase; Provisional

Probab=87.72  E-value=4  Score=36.72  Aligned_cols=51  Identities=14%  Similarity=0.193  Sum_probs=39.6

Q ss_pred             CeEEEEEEeCCcccHHHHHHHHHHHCCceEEEEEEEecCCeeEEEEEEeeC
Q 028501           13 DATIVQLSFGDRLGALIDTMNALKDLGLDVAKGTVNTEGSVKQTKFFITRL   63 (208)
Q Consensus        13 ~~~~v~v~~~DrpGLl~~i~~~L~~~gl~I~~a~i~t~~~~~~d~F~v~~~   63 (208)
                      ...-|.+...|+||.|++|++.|.++|++|.+.......+.....+++++.
T Consensus       347 ~~yylRl~v~d~pGvLa~I~~~f~~~~vsI~si~q~~~~~~~~~ivivT~~  397 (426)
T PRK06349        347 SKYYLRLLVADKPGVLAKIAAIFAENGISIESILQKGAGGEGAEIVIVTHE  397 (426)
T ss_pred             eeEEEEEEecCCcchHHHHHHHHhhcCccEEEEEeccCCCCceeEEEEEEe
Confidence            346788889999999999999999999999976655443344555667654

>COG3978 Acetolactate synthase (isozyme II), small (regulatory) subunit [Function unknown]

Probab=87.59  E-value=5.8  Score=27.21  Aligned_cols=48  Identities=13%  Similarity=0.141  Sum_probs=39.2

Q ss_pred             eEEEEEEecCcchHHHHHHHHHHhCCccEEEEEEEec--CCeEEEEEEEE
Q 028501          129 RSLLYIETADRPGLLVEIMKIIADVNVDVESAEIDTE--GLVAKDKFHVS  176 (208)
Q Consensus       129 ~~~i~v~~~Dr~GlL~~i~~~l~~~~i~I~~a~i~t~--~~~~~~~f~v~  176 (208)
                      .+.+.+...++|+.|..+-++....|..+..+..++.  ++.+.-.|.|.
T Consensus         3 qyqldl~ar~~pe~leRVLrvtrhRGF~vcamnmt~~~da~~~nie~tV~   52 (86)
T COG3978           3 QYQLDLSARFNPETLERVLRVTRHRGFRVCAMNMTAAVDAGNANIELTVD   52 (86)
T ss_pred             eEEEeeeccCChHHHHHHHHHhhhcCeEEEEeecccccccccceEEEEEc
Confidence            5789999999999999999999999999999988775  34444445553

>cd04922 ACT_AKi-HSDH-ThrA_2 ACT domains of the bifunctional enzyme aspartokinase (AK) - homoserine dehydrogenase (HSDH)

Probab=87.21  E-value=5.5  Score=25.09  Aligned_cols=44  Identities=16%  Similarity=0.271  Sum_probs=31.7

Q ss_pred             EEEEEe---cCcchHHHHHHHHHHhCCccEEEEEEEecCCeEEEEEEEE
Q 028501          131 LLYIET---ADRPGLLVEIMKIIADVNVDVESAEIDTEGLVAKDKFHVS  176 (208)
Q Consensus       131 ~i~v~~---~Dr~GlL~~i~~~l~~~~i~I~~a~i~t~~~~~~~~f~v~  176 (208)
                      .|.+.|   .+.||++++|.++|++.|+++......+ .+ ..-.|.+.
T Consensus         3 ~isvvg~~~~~~~~~~~~i~~~l~~~~I~v~~i~~~~-s~-~~is~~v~   49 (66)
T cd04922           3 ILALVGDGMAGTPGVAATFFSALAKANVNIRAIAQGS-SE-RNISAVID   49 (66)
T ss_pred             EEEEECCCCCCCccHHHHHHHHHHHCCCCEEEEEecC-cc-cEEEEEEe
Confidence            455655   4789999999999999999998775543 22 33346664

This CD includes the second of two ACT domains of the bifunctional enzyme aspartokinase (AK) - homoserine dehydrogenase (HSDH). The ACT domains are positioned between the N-terminal catalytic domain of AK and the C-terminal HSDH domain found in bacteria (Escherichia coli (EC) ThrA) and higher plants (Zea mays AK-HSDH). AK and HSDH are the first and third enzymes in the biosynthetic pathway of the aspartate family of amino acids. AK catalyzes the phosphorylation of Asp to P-aspartyl phosphate. HSDH catalyzes the NADPH-dependent conversion of Asp 3-semialdehyde to homoserine. HSDH is the first committed reaction in the branch of the pathway that leads to Thr and Met. In E. coli, ThrA is subject to allosteric regulation by the end product L-threonine and the native enzyme is reported to be tetrameric. As with bacteria, plant AK and HSDH are feedback inhibited by pathwa

>cd04933 ACT_AK1-AT_1 ACT domains located C-terminal to the catalytic domain of a monofunctional, lysine-sensitive, plant aspartate kinase 1 (AK1)

Probab=87.08  E-value=3.4  Score=28.13  Aligned_cols=37  Identities=11%  Similarity=0.240  Sum_probs=28.7

Q ss_pred             cCcchHHHHHHHHHHhCCccEEEEEEEecCCeEEEEEEEEe
Q 028501          137 ADRPGLLVEIMKIIADVNVDVESAEIDTEGLVAKDKFHVSY  177 (208)
Q Consensus       137 ~Dr~GlL~~i~~~l~~~~i~I~~a~i~t~~~~~~~~f~v~~  177 (208)
                      .+.||++++|..+|+++|++|..+..   ++ ..-.|.+..
T Consensus        12 ~~~~g~~a~IF~~La~~~InVDmI~q---s~-~sISftV~~   48 (78)
T cd04933          12 LGQYGFLAKVFSIFETLGISVDVVAT---SE-VSISLTLDP   48 (78)
T ss_pred             CCccCHHHHHHHHHHHcCCcEEEEEe---cC-CEEEEEEEh
Confidence            57899999999999999999998853   22 333566654

This CD includes the first of two ACT domains located C-terminal to the catalytic domain of a monofunctional, lysine-sensitive, plant aspartate kinase 1 (AK1), which can be synergistically inhibited by S-adenosylmethionine. This isoenzyme is found in higher plants, Arabidopsis thaliana (AT) and Zea mays, and also in Chlorophyta. Like the Escherichia coli AKIII (LysC), Arabidopsis AK1 binds two feedback allosteric inhibitor lysine molecules at the dimer interface located between the ACT1 domain of two subunits. A loop in common is involved in the binding of both Lys and S-adenosylmethionine providing an explanation for the synergistic inhibition by these effectors. Members of this CD belong to the superfamily of ACT regulatory domains.

>cd04912 ACT_AKiii-LysC-EC-like_1 ACT domains located C-terminal to the catalytic domain of the lysine-sensitive aspartokinase isoenzyme AKIII

Probab=86.77  E-value=7.1  Score=25.89  Aligned_cols=31  Identities=26%  Similarity=0.456  Sum_probs=25.0

Q ss_pred             EEEEEe---cCcchHHHHHHHHHHhCCccEEEEE
Q 028501          131 LLYIET---ADRPGLLVEIMKIIADVNVDVESAE  161 (208)
Q Consensus       131 ~i~v~~---~Dr~GlL~~i~~~l~~~~i~I~~a~  161 (208)
                      .+++.|   .+.+|++++|..+|++.|+++....
T Consensus         3 ~Vsi~g~~l~~~~g~~~~if~~L~~~~I~v~~i~   36 (75)
T cd04912           3 LLNIKSNRMLGAHGFLAKVFEIFAKHGLSVDLIS   36 (75)
T ss_pred             EEEEEcCCCCCCccHHHHHHHHHHHcCCeEEEEE
Confidence            455533   5779999999999999999997764

This CD includes the first of two ACT domains located C-terminal to the catalytic domain of the lysine-sensitive aspartokinase isoenzyme AKIII, a monofunctional class enzyme found in bacteria (Escherichia coli (EC) LysC) and plants, (Zea mays Ask1, Ask2, and Arabidopsis thaliana AK1). Aspartokinase is the first enzyme in the aspartate metabolic pathway and catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. Like the A. thaliana AK1 (AK1-AT), the E. coli AKIII (LysC) has two bound feedback allosteric inhibitor lysine molecules at the dimer interface located between the ACT1 domain of two subunits. The lysine-sensitive plant isoenzyme is synergistically inhibited by S-adenosylmethionine. A homolog of this group appears to be the Saccharomyces cerevisiae AK (Hom3) which clusters with this group as well. Members of this CD

>PLN02550 threonine dehydratase

Probab=86.72  E-value=28  Score=32.84  Aligned_cols=130  Identities=8%  Similarity=0.082  Sum_probs=71.6

Q ss_pred             EEEEEEeCCcccHHHHHHHHHHHCCceEEEEEEEecCCeeEEEEEEeeCCCCCCCCCHHHHHHHHHHHHHhhccCCCCc-
Q 028501           15 TIVQLSFGDRLGALIDTMNALKDLGLDVAKGTVNTEGSVKQTKFFITRLDTGRKVEDPDLLERIRLTIINNLLKYHPES-   93 (208)
Q Consensus        15 ~~v~v~~~DrpGLl~~i~~~L~~~gl~I~~a~i~t~~~~~~d~F~v~~~~~g~~~~~~~~~~~l~~~L~~~l~~~~~~~-   93 (208)
                      ..+.|.-+||||-|.+++..|...  ||.+..-....-....+++....      .+++..+.|.+.|++.=-.. .++ 
T Consensus       418 ~~~~v~ipd~pG~l~~~~~~l~~~--ni~~~~~~~~~~~~~~v~v~ie~------~~~~~~~~i~~~l~~~g~~~-~~l~  488 (591)
T PLN02550        418 AVLATFMPEEPGSFKRFCELVGPM--NITEFKYRYSSEKEALVLYSVGV------HTEQELQALKKRMESAQLRT-VNLT  488 (591)
T ss_pred             EEEEEEcCCCCCHHHHHHHHhhhh--cceEEEEEecCCCceEEEEEEEe------CCHHHHHHHHHHHHHCCCCe-EeCC
Confidence            568888999999999999999986  77765554422222222333222      12466677777776511110 000 


Q ss_pred             hhhhhccccccCCCCCcccCCccccEEEEecCCCCeEEEEEEecCcchHHHHHHHHHHhCCccEEEEEEEecCCe
Q 028501           94 SEQLAMGEAFGIKAPEKKLDVDIATHIHVKEDGPKRSLLYIETADRPGLLVEIMKIIADVNVDVESAEIDTEGLV  168 (208)
Q Consensus        94 ~~~l~~~~~~~~~~~~~~~~~~~~~~V~~~~~~~~~~~i~v~~~Dr~GlL~~i~~~l~~~~i~I~~a~i~t~~~~  168 (208)
                      ...++    +-+.     +++....     .+......+.+.-+.|||-|..+...|... -||...+-...++.
T Consensus       489 ~~~~~----~~~L-----R~v~g~r-----a~~~~E~l~~v~fPErpGAl~~Fl~~lg~~-~nITeF~YR~~~~~  548 (591)
T PLN02550        489 SNDLV----KDHL-----RYLMGGR-----AIVKDELLYRFVFPERPGALMKFLDAFSPR-WNISLFHYRGQGET  548 (591)
T ss_pred             CChHH----hhhh-----hheeccc-----cccCceEEEEEEecCcCCHHHHHHHhhCCC-CceeeEEeecCCCC
Confidence            01111    0000     0111010     011224788999999999999999988753 34444444333433

>cd04912 ACT_AKiii-LysC-EC-like_1 ACT domains located C-terminal to the catalytic domain of the lysine-sensitive aspartokinase isoenzyme AKIII

Probab=86.64  E-value=7.2  Score=25.85  Aligned_cols=44  Identities=16%  Similarity=0.207  Sum_probs=30.5

Q ss_pred             EEEEEEe---CCcccHHHHHHHHHHHCCceEEEEEEEecCCeeEEEEEEee
Q 028501           15 TIVQLSF---GDRLGALIDTMNALKDLGLDVAKGTVNTEGSVKQTKFFITR   62 (208)
Q Consensus        15 ~~v~v~~---~DrpGLl~~i~~~L~~~gl~I~~a~i~t~~~~~~d~F~v~~   62 (208)
                      +.|++.+   .+.+|+++++..+|.+.|+++..  +.+.+..+  +|.+..
T Consensus         2 ~~Vsi~g~~l~~~~g~~~~if~~L~~~~I~v~~--i~~s~~~i--s~~v~~   48 (75)
T cd04912           2 TLLNIKSNRMLGAHGFLAKVFEIFAKHGLSVDL--ISTSEVSV--SLTLDP   48 (75)
T ss_pred             EEEEEEcCCCCCCccHHHHHHHHHHHcCCeEEE--EEcCCcEE--EEEEEc
Confidence            3566643   67899999999999999999973  33433333  366653

This CD includes the first of two ACT domains located C-terminal to the catalytic domain of the lysine-sensitive aspartokinase isoenzyme AKIII, a monofunctional class enzyme found in bacteria (Escherichia coli (EC) LysC) and plants, (Zea mays Ask1, Ask2, and Arabidopsis thaliana AK1). Aspartokinase is the first enzyme in the aspartate metabolic pathway and catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. Like the A. thaliana AK1 (AK1-AT), the E. coli AKIII (LysC) has two bound feedback allosteric inhibitor lysine molecules at the dimer interface located between the ACT1 domain of two subunits. The lysine-sensitive plant isoenzyme is synergistically inhibited by S-adenosylmethionine. A homolog of this group appears to be the Saccharomyces cerevisiae AK (Hom3) which clusters with this group as well. Members of this CD

>PRK09466 metL bifunctional aspartate kinase II/homoserine dehydrogenase II; Provisional

Probab=86.40  E-value=33  Score=33.69  Aligned_cols=106  Identities=13%  Similarity=0.066  Sum_probs=65.3

Q ss_pred             CCeEEEEEEeC---CcccHHHHHHHHHHHCCceEEEEEEEecCCeeEEEEEEeeCCCCCCCCCHHHHHHHHHHHHHhhcc
Q 028501           12 SDATIVQLSFG---DRLGALIDTMNALKDLGLDVAKGTVNTEGSVKQTKFFITRLDTGRKVEDPDLLERIRLTIINNLLK   88 (208)
Q Consensus        12 ~~~~~v~v~~~---DrpGLl~~i~~~L~~~gl~I~~a~i~t~~~~~~d~F~v~~~~~g~~~~~~~~~~~l~~~L~~~l~~   88 (208)
                      ++...|+|.+.   +.+|.++++.++|.++|++|.-..  +..+...-.|.+..          +..+.+...|++ +..
T Consensus       315 ~~v~~i~i~~~~~~g~~g~~~~if~~l~~~~I~v~~i~--~~~s~~sis~~i~~----------~~~~~~~~~l~~-~~~  381 (810)
T PRK09466        315 DDVCLIELQVPASHDFKLAQKELDQLLKRAQLRPLAVG--VHPDRQLLQLAYTS----------EVADSALKLLDD-AAL  381 (810)
T ss_pred             CCEEEEEEecCCcCCcchHHHHHHHHHHHCCCeEEEEE--ecCCCcEEEEEEeH----------HHHHHHHHHHHh-hcC
Confidence            35567788765   778999999999999999998443  22332222243331          122333333333 110


Q ss_pred             CCCCchhhhhccccccCCCCCcccCCccccEEEEecCCCCeEEEEEEec---CcchHHHHHHHHHHhCCccEEEEE
Q 028501           89 YHPESSEQLAMGEAFGIKAPEKKLDVDIATHIHVKEDGPKRSLLYIETA---DRPGLLVEIMKIIADVNVDVESAE  161 (208)
Q Consensus        89 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~V~~~~~~~~~~~i~v~~~---Dr~GlL~~i~~~l~~~~i~I~~a~  161 (208)
                                                  +.+|.+..   +...|.+.|.   .++|+..++..+|++.++++....
T Consensus       382 ----------------------------~~~i~v~~---~~a~VsvVG~gm~~~~gv~~~~f~aL~~~~I~ii~~~  426 (810)
T PRK09466        382 ----------------------------PGELKLRE---GLALVALVGAGVTRNPLHCHRFYQQLKDQPVEFIWQS  426 (810)
T ss_pred             ----------------------------CCcEEEeC---CeEEEEEeCCCcccCccHHHHHHHHHHhCCCcEEEEe
Confidence                                        01123222   3367788775   689999999999999999885543

>cd04891 ACT_AK-LysC-DapG-like_1 ACT domains of the lysine-sensitive aspartokinase isoenzyme AKII and related proteins

Probab=86.32  E-value=2.8  Score=25.63  Aligned_cols=41  Identities=20%  Similarity=0.373  Sum_probs=30.1

Q ss_pred             ecCcchHHHHHHHHHHhCCccEEEEEEEecCC-eEEEEEEEE
Q 028501          136 TADRPGLLVEIMKIIADVNVDVESAEIDTEGL-VAKDKFHVS  176 (208)
Q Consensus       136 ~~Dr~GlL~~i~~~l~~~~i~I~~a~i~t~~~-~~~~~f~v~  176 (208)
                      ..|.||.++++...|+++|++|..+.....++ ...-.|.+.
T Consensus         8 ~~~~~~~~~~i~~~L~~~~i~i~~i~~~~~~~~~~~is~~v~   49 (61)
T cd04891           8 VPDKPGVAAKIFSALAEAGINVDMIVQSVSRGGTTDISFTVP   49 (61)
T ss_pred             CCCCCcHHHHHHHHHHHcCCcEEEEEEcCCCCCcEEEEEEEe
Confidence            46889999999999999999998876643222 233346664

This CD includes the N-terminal of the two ACT domains of the lysine-sensitive aspartokinase isoenzyme AKII of Bacillus subtilis (BS) strain 168, and the lysine plus threonine-sensitive aspartokinase of Corynebacterium glutamicum, as well as, the first and third, of four, ACT domains present in cyanobacteria AK. Also included are the N-terminal of the two ACT domains of the diaminopimelate-sensitive aspartokinase isoenzyme AKI found in Bacilli (Bacillus subtilis strain 168), Clostridia, and Actinobacteria bacterial species. Members of this CD belong to the superfamily of ACT regulatory domains.

>PRK13581 D-3-phosphoglycerate dehydrogenase; Provisional

Probab=86.03  E-value=3.2  Score=38.46  Aligned_cols=40  Identities=15%  Similarity=0.267  Sum_probs=33.4

Q ss_pred             CeEEEEEEeCCcccHHHHHHHHHHHCCceEEEEEEEecCC
Q 028501           13 DATIVQLSFGDRLGALIDTMNALKDLGLDVAKGTVNTEGS   52 (208)
Q Consensus        13 ~~~~v~v~~~DrpGLl~~i~~~L~~~gl~I~~a~i~t~~~   52 (208)
                      ....+.+...|+||.++.++..|.+.++||...++.....
T Consensus       451 ~~~~li~~~~D~pG~I~~v~~~L~~~~iNIa~m~~~r~~~  490 (526)
T PRK13581        451 EGHMLIIRNRDRPGVIGKVGTLLGEAGINIAGMQLGRREA  490 (526)
T ss_pred             CceEEEEEeCCcCChhHHHHHHHhhcCCCchhcEeccCCC
Confidence            3445566779999999999999999999999998887543

>cd04913 ACT_AKii-LysC-BS-like_1 ACT domains of the lysine-sensitive aspartokinase isoenzyme AKII of Bacillus subtilis (BS) strain 168 and related proteins

Probab=85.73  E-value=2.8  Score=26.97  Aligned_cols=41  Identities=22%  Similarity=0.408  Sum_probs=29.1

Q ss_pred             ecCcchHHHHHHHHHHhCCccEEEEEEEecCC-eEEEEEEEE
Q 028501          136 TADRPGLLVEIMKIIADVNVDVESAEIDTEGL-VAKDKFHVS  176 (208)
Q Consensus       136 ~~Dr~GlL~~i~~~l~~~~i~I~~a~i~t~~~-~~~~~f~v~  176 (208)
                      ..|+||.++++.+.|++.|++|..+......+ ...-.|.+.
T Consensus         9 ~~~~~g~~~~i~~~L~~~~I~i~~i~~~~~~~~~~~is~~v~   50 (75)
T cd04913           9 VPDKPGVAAKIFGALAEANINVDMIVQNVSRDGTTDISFTVP   50 (75)
T ss_pred             CCCCCcHHHHHHHHHHHcCCeEEEEEeCCCCCCcEEEEEEec
Confidence            36889999999999999999998775433222 222345553

This CD includes the N-terminal of the two ACT domains of the lysine-sensitive aspartokinase isoenzyme AKII of Bacillus subtilis (BS) strain 168, and the lysine plus threonine-sensitive aspartokinase of Corynebacterium glutamicum, and related sequences. In B. subtilis 168, the regulation of the diaminopimelate (Dap)-lysine biosynthetic pathway involves dual control by Dap and lysine, effected through separate Dap- and lysine-sensitive aspartokinase isoenzymes. The B. subtilis 168 AKII is induced by methionine and repressed and inhibited by lysine. Although Corynebacterium glutamicum is known to contain a single aspartokinase, both the succinylase and dehydrogenase variant pathways of DAP-lysine synthesis operate simultaneously in this organism. In corynebacteria and other various Gram-positive bacteria, the DAP-lysine pathway is fee

>cd04868 ACT_AK-like ACT domains C-terminal to the catalytic domain of aspartokinase (AK; 4-L-aspartate-4-phosphotransferase)

Probab=85.39  E-value=2.2  Score=25.83  Aligned_cols=43  Identities=19%  Similarity=0.345  Sum_probs=30.2

Q ss_pred             EEEEecC---cchHHHHHHHHHHhCCccEEEEEEEecCCeEEEEEEEE
Q 028501          132 LYIETAD---RPGLLVEIMKIIADVNVDVESAEIDTEGLVAKDKFHVS  176 (208)
Q Consensus       132 i~v~~~D---r~GlL~~i~~~l~~~~i~I~~a~i~t~~~~~~~~f~v~  176 (208)
                      +++.|.+   .+|+++++.++|++++++|........  ...-.|.+.
T Consensus         3 i~v~g~~~~~~~~~~~~i~~~l~~~~i~i~~i~~~~~--~~~~s~~v~   48 (60)
T cd04868           3 VSIVGVGMRGTPGVAAKIFSALAEAGINVDMISQSES--EVNISFTVD   48 (60)
T ss_pred             EEEECCCCCCCCCHHHHHHHHHHHCCCcEEEEEcCCC--cEEEEEEEe
Confidence            4444444   899999999999999999987765432  222346664

This CD includes each of two ACT domains C-terminal to the catalytic domain of aspartokinase (AK; 4-L-aspartate-4-phosphotransferase). Typically, AK consists of two ACT domains in a tandem repeat, but the second ACT domain is inserted within the first, resulting in, what is normally the terminal beta strand of ACT2, formed from a region N-terminal of ACT1. AK catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. Aspartokinase is the first enzyme in the pathway of the biosynthesis of the aspartate family of amino acids (lysine, threonine, methionine, and isoleucine) and the bacterial cell wall component, meso-diaminopimelate. One mechanism for the regulation of this pathway is by the production of several isoenzymes of aspartokinase with different repressors and allosteric inhibitors. Pairs of ACT domains are proposed to specifically bind am

>PRK10820 DNA-binding transcriptional regulator TyrR; Provisional

Probab=85.20  E-value=1.2  Score=41.10  Aligned_cols=35  Identities=29%  Similarity=0.399  Sum_probs=32.7

Q ss_pred             EEEEEecCcchHHHHHHHHHHhCCccEEEEEEEec
Q 028501          131 LLYIETADRPGLLVEIMKIIADVNVDVESAEIDTE  165 (208)
Q Consensus       131 ~i~v~~~Dr~GlL~~i~~~l~~~~i~I~~a~i~t~  165 (208)
                      .++|.|.||.|+..+|...|..+++|+..+.+...
T Consensus         2 rl~~~~~dr~g~~~~~l~~~~~~~~~~~~~e~~~~   36 (520)
T PRK10820          2 RLEVFCEDRLGLTRELLDLLVLRSIDLRGIEIDPI   36 (520)
T ss_pred             eEEEEeeccccHHHHHHHHHHhcCCCccEEEEcCC
Confidence            48999999999999999999999999999999764

>PRK08526 threonine dehydratase; Provisional

Probab=84.69  E-value=6.9  Score=34.99  Aligned_cols=38  Identities=21%  Similarity=0.435  Sum_probs=34.4

Q ss_pred             eEEEEEEecCcchHHHHHHHHHHhCCccEEEEEEEecC
Q 028501          129 RSLLYIETADRPGLLVEIMKIIADVNVDVESAEIDTEG  166 (208)
Q Consensus       129 ~~~i~v~~~Dr~GlL~~i~~~l~~~~i~I~~a~i~t~~  166 (208)
                      ...+.+.-+||||-|.+++..+...+.||.++.-....
T Consensus       326 ~~~~~~~~~d~pg~l~~~~~~~~~~~~~i~~~~~~r~~  363 (403)
T PRK08526        326 KMKLHVTLVDKPGALMGLTDILKEANANIVKIDYDRFS  363 (403)
T ss_pred             EEEEEEEcCCCCCHHHHHHHHHccCCCcEEEEEEEecc
Confidence            68899999999999999999999999999998876543

>cd04919 ACT_AK-Hom3_2 ACT domains located C-terminal to the catalytic domain of the aspartokinase (AK) HOM3

Probab=83.84  E-value=7  Score=24.73  Aligned_cols=44  Identities=11%  Similarity=0.173  Sum_probs=31.6

Q ss_pred             EEEEEec---CcchHHHHHHHHHHhCCccEEEEEEEecCCeEEEEEEEE
Q 028501          131 LLYIETA---DRPGLLVEIMKIIADVNVDVESAEIDTEGLVAKDKFHVS  176 (208)
Q Consensus       131 ~i~v~~~---Dr~GlL~~i~~~l~~~~i~I~~a~i~t~~~~~~~~f~v~  176 (208)
                      .|.+.|.   ++||+++++..+|++.|+++..+...+. + ..-.|.+.
T Consensus         3 ~isvvg~~~~~~~~~~~~if~~L~~~~I~v~~i~q~~s-~-~~isf~v~   49 (66)
T cd04919           3 ILSLVGKHMKNMIGIAGRMFTTLADHRINIEMISQGAS-E-INISCVID   49 (66)
T ss_pred             EEEEECCCCCCCcCHHHHHHHHHHHCCCCEEEEEecCc-c-ceEEEEEe
Confidence            4555554   7899999999999999999987765442 2 22346664

This CD includes the second of two ACT domains located C-terminal to the catalytic domain of the aspartokinase (AK) HOM3, a monofunctional class enzyme found in Saccharomyces cerevisiae, and other related ACT domains. AK is the first enzyme in the aspartate metabolic pathway, catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP, and in fungi, is responsible for the production of threonine, isoleucine and methionine. S. cerevisiae has a single AK, which is regulated by feedback, allosteric inhibition by L-threonine. Recent studies shown that the allosteric transition triggered by binding of threonine to AK involves a large change in the conformation of the native hexameric enzyme that is converted to an inactive one of different shape and substantially smaller hydrodynamic size. Members of this CD belong to the superfamily of ACT regulatory domains.

>PRK10622 pheA bifunctional chorismate mutase/prephenate dehydratase; Provisional

Probab=83.66  E-value=11  Score=33.65  Aligned_cols=50  Identities=16%  Similarity=0.337  Sum_probs=37.0

Q ss_pred             eEEEEEEeCCcccHHHHHHHHHHHCCceEEEEEEEecC--Ce-eEEEEEEeeCCCCC
Q 028501           14 ATIVQLSFGDRLGALIDTMNALKDLGLDVAKGTVNTEG--SV-KQTKFFITRLDTGR   67 (208)
Q Consensus        14 ~~~v~v~~~DrpGLl~~i~~~L~~~gl~I~~a~i~t~~--~~-~~d~F~v~~~~~g~   67 (208)
                      .+.+.+..+|+||.|+++.+.|+..|+|..  +|.+.+  +. +--.|+|.-.  |.
T Consensus       297 ktsl~~~~~~~pGaL~~~L~~Fa~~giNLt--kIeSRP~~~~~~~Y~Ffid~e--g~  349 (386)
T PRK10622        297 KTTLLMATGQQAGALVEALLVLRNHNLIMT--KLESRPIHGNPWEEMFYLDVQ--AN  349 (386)
T ss_pred             cEEEEEEcCCCCcHHHHHHHHHHHcCCCee--EEEeeecCCCCceEEEEEEEe--CC
Confidence            455666668999999999999999999999  555543  32 3345888654  65

>cd04934 ACT_AK-Hom3_1 CT domains located C-terminal to the catalytic domain of the aspartokinase (AK) HOM3, a monofunctional class enzyme found in Saccharomyces cerevisiae, and other related ACT domains

Probab=83.34  E-value=8.9  Score=25.55  Aligned_cols=53  Identities=13%  Similarity=0.139  Sum_probs=34.5

Q ss_pred             CcchHHHHHHHHHHhCCccEEEEEEEecCCeEEEEEEEEeCCCCCChHHHHHHHHHHHH
Q 028501          138 DRPGLLVEIMKIIADVNVDVESAEIDTEGLVAKDKFHVSYGGAALNSSLSQVLVNCLRY  196 (208)
Q Consensus       138 Dr~GlL~~i~~~l~~~~i~I~~a~i~t~~~~~~~~f~v~~~g~~~~~~~~~~l~~~l~~  196 (208)
                      -.||++++|.++|+++|+|+..+..   ++ ..-.|.+..+  .+.++..++|.+.|..
T Consensus        13 ~~~g~~~~If~~la~~~I~vd~I~~---s~-~~isftv~~~--~~~~~~l~~l~~el~~   65 (73)
T cd04934          13 LSHGFLARIFAILDKYRLSVDLIST---SE-VHVSMALHME--NAEDTNLDAAVKDLQK   65 (73)
T ss_pred             cccCHHHHHHHHHHHcCCcEEEEEe---CC-CEEEEEEehh--hcChHHHHHHHHHHHH
Confidence            4599999999999999999998854   22 3334555432  2223334566565554

This CD includes the first of two ACT domains located C-terminal to the catalytic domain of the aspartokinase (AK) HOM3, a monofunctional class enzyme found in Saccharomyces cerevisiae, and other related ACT domains. AK is the first enzyme in the aspartate metabolic pathway, catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP, and in fungi, is responsible for the production of threonine, isoleucine and methionine. S. cerevisiae has a single AK, which is regulated by feedback, allosteric inhibition by L-threonine. Recent studies shown that the allosteric transition triggered by binding of threonine to AK involves a large change in the conformation of the native hexameric enzyme that is converted to an inactive one of different shape and substantially smaller hydro

>cd04937 ACT_AKi-DapG-BS_2 ACT domains of the diaminopimelate-sensitive aspartokinase (AK) isoenzyme AKI

Probab=83.17  E-value=3.7  Score=26.34  Aligned_cols=28  Identities=14%  Similarity=0.359  Sum_probs=24.3

Q ss_pred             EEEEEec---CcchHHHHHHHHHHhCCccEE
Q 028501          131 LLYIETA---DRPGLLVEIMKIIADVNVDVE  158 (208)
Q Consensus       131 ~i~v~~~---Dr~GlL~~i~~~l~~~~i~I~  158 (208)
                      .+.+.|.   +.||+++++..+|++.|+++.
T Consensus         3 ~isvvG~~~~~~~gi~~~if~aL~~~~I~v~   33 (64)
T cd04937           3 KVTIIGSRIRGVPGVMAKIVGALSKEGIEIL   33 (64)
T ss_pred             EEEEECCCccCCcCHHHHHHHHHHHCCCCEE
Confidence            4666665   789999999999999999995

This CD includes the C-terminal of the two ACT domains of the diaminopimelate-sensitive aspartokinase (AK) isoenzyme AKI, a monofunctional class enzyme found in Bacilli (Bacillus subtilis (BS) strain 168), Clostridia, and Actinobacteria bacterial species. In B. subtilis, the regulation of the diaminopimelate-lysine biosynthetic pathway involves dual control by diaminopimelate and lysine, effected through separate diaminopimelate- and lysine-sensitive AK isoenzymes. AKI activity is invariant during the exponential and stationary phases of growth and is not altered by addition of amino acids to the growth medium. The role of this isoenzyme is most likely to provide a constant level of aspartyl-beta-phosphate for the biosynthesis of diaminopimelate for peptidoglycan synthesis and dipicolinate during sporulation. The BS AKI is tetrameric consisting of two alpha and two beta subunits; th

>cd04890 ACT_AK-like_1 ACT domains found C-terminal to the catalytic domain of aspartokinase (AK; 4-L-aspartate-4-phosphotransferase)

Probab=83.06  E-value=8.6  Score=24.12  Aligned_cols=37  Identities=14%  Similarity=0.203  Sum_probs=27.9

Q ss_pred             cCcchHHHHHHHHHHhCCccEEEEEEEecCCeEEEEEEEEe
Q 028501          137 ADRPGLLVEIMKIIADVNVDVESAEIDTEGLVAKDKFHVSY  177 (208)
Q Consensus       137 ~Dr~GlL~~i~~~l~~~~i~I~~a~i~t~~~~~~~~f~v~~  177 (208)
                      .+++|+.++|.++|+++|+++.....   ++ ..-.|.+..
T Consensus        11 ~~~~~~~~~if~~l~~~~i~v~~i~t---~~-~~is~~v~~   47 (62)
T cd04890          11 NGEVGFLRKIFEILEKHGISVDLIPT---SE-NSVTLYLDD   47 (62)
T ss_pred             CcccCHHHHHHHHHHHcCCeEEEEec---CC-CEEEEEEeh
Confidence            47799999999999999999988843   22 334566653

This CD includes the first of two ACT domains found C-terminal to the catalytic domain of aspartokinase (AK; 4-L-aspartate-4-phosphotransferase). AK catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP, and is the first enzyme in the pathway of the biosynthesis of the aspartate family of amino acids, lysine, threonine, methionine, and isoleucine. This CD, includes the first ACT domain of the Escherichia coli (EC) isoenzyme, AKIII (LysC) and the Arabidopsis isoenzyme, asparate kinase 1, both enzymes monofunctional and involved in lysine synthesis, as well as the the first ACT domain of Bacillus subtilis (BS) isoenzyme, AKIII (YclM), and of the Saccharomyces cerevisiae AK (Hom3). Also included are the first ACT domains of the Methylomicrobium alcaliphilum AK, the first enzyme of the ectoine biosynthetic pathway. Members of this CD bel

>KOG2663 consensus Acetolactate synthase, small subunit [Amino acid transport and metabolism]

Probab=82.93  E-value=1.8  Score=36.24  Aligned_cols=37  Identities=22%  Similarity=0.384  Sum_probs=33.1

Q ss_pred             CeEEEEEEecCcchHHHHHHHHHHhCCccEEEEEEEe
Q 028501          128 KRSLLYIETADRPGLLVEIMKIIADVNVDVESAEIDT  164 (208)
Q Consensus       128 ~~~~i~v~~~Dr~GlL~~i~~~l~~~~i~I~~a~i~t  164 (208)
                      ...++.+...|.||+|..|+-+|+..|.||.+.-+--
T Consensus        76 krHvinclVqnEpGvlsRisGvlAaRGfNIdSLvVc~  112 (309)
T KOG2663|consen   76 KRHVINCLVQNEPGVLSRISGVLAARGFNIDSLVVCL  112 (309)
T ss_pred             cceeEEEEecCCchHHHHHHHHHHhccCCchheeeec
Confidence            3578999999999999999999999999999987653

>PRK08526 threonine dehydratase; Provisional

Probab=82.83  E-value=15  Score=32.84  Aligned_cols=66  Identities=15%  Similarity=0.189  Sum_probs=44.9

Q ss_pred             CeEEEEEEeCCcccHHHHHHHHHHHCCceEEEEEEEecCCe----eEEEEEEeeCCCCCCCCCHHHHHHHHHHHHH
Q 028501           13 DATIVQLSFGDRLGALIDTMNALKDLGLDVAKGTVNTEGSV----KQTKFFITRLDTGRKVEDPDLLERIRLTIIN   84 (208)
Q Consensus        13 ~~~~v~v~~~DrpGLl~~i~~~L~~~gl~I~~a~i~t~~~~----~~d~F~v~~~~~g~~~~~~~~~~~l~~~L~~   84 (208)
                      ....+.+.-+|+||-|.+++..+...+.||.+..-......    -..+++....      .+++..+.|.+.|++
T Consensus       325 r~~~~~~~~~d~pg~l~~~~~~~~~~~~~i~~~~~~r~~~~~~~~~~~~~~~~e~------~~~~~~~~~~~~l~~  394 (403)
T PRK08526        325 RKMKLHVTLVDKPGALMGLTDILKEANANIVKIDYDRFSTKLDYGDAMISITLET------KGKEHQEEIRKILTE  394 (403)
T ss_pred             CEEEEEEEcCCCCCHHHHHHHHHccCCCcEEEEEEEeccCCCCCccEEEEEEEEe------CCHHHHHHHHHHHHH
Confidence            44678899999999999999999999999997766443321    1222222222      124666777777654

>cd04913 ACT_AKii-LysC-BS-like_1 ACT domains of the lysine-sensitive aspartokinase isoenzyme AKII of Bacillus subtilis (BS) strain 168 and related proteins

Probab=82.59  E-value=7.3  Score=24.89  Aligned_cols=27  Identities=19%  Similarity=0.234  Sum_probs=23.5

Q ss_pred             eCCcccHHHHHHHHHHHCCceEEEEEE
Q 028501           21 FGDRLGALIDTMNALKDLGLDVAKGTV   47 (208)
Q Consensus        21 ~~DrpGLl~~i~~~L~~~gl~I~~a~i   47 (208)
                      .+|.||.++++++.|.+.|++|.....
T Consensus         9 ~~~~~g~~~~i~~~L~~~~I~i~~i~~   35 (75)
T cd04913           9 VPDKPGVAAKIFGALAEANINVDMIVQ   35 (75)
T ss_pred             CCCCCcHHHHHHHHHHHcCCeEEEEEe
Confidence            478999999999999999999984443

This CD includes the N-terminal of the two ACT domains of the lysine-sensitive aspartokinase isoenzyme AKII of Bacillus subtilis (BS) strain 168, and the lysine plus threonine-sensitive aspartokinase of Corynebacterium glutamicum, and related sequences. In B. subtilis 168, the regulation of the diaminopimelate (Dap)-lysine biosynthetic pathway involves dual control by Dap and lysine, effected through separate Dap- and lysine-sensitive aspartokinase isoenzymes. The B. subtilis 168 AKII is induced by methionine and repressed and inhibited by lysine. Although Corynebacterium glutamicum is known to contain a single aspartokinase, both the succinylase and dehydrogenase variant pathways of DAP-lysine synthesis operate simultaneously in this organism. In corynebacteria and other various Gram-positive bacteria, the DAP-lysine pathway is fee

>cd04891 ACT_AK-LysC-DapG-like_1 ACT domains of the lysine-sensitive aspartokinase isoenzyme AKII and related proteins

Probab=82.46  E-value=8.6  Score=23.30  Aligned_cols=27  Identities=22%  Similarity=0.316  Sum_probs=23.8

Q ss_pred             eCCcccHHHHHHHHHHHCCceEEEEEE
Q 028501           21 FGDRLGALIDTMNALKDLGLDVAKGTV   47 (208)
Q Consensus        21 ~~DrpGLl~~i~~~L~~~gl~I~~a~i   47 (208)
                      .+|.+|.++++.+.|.++|++|.....
T Consensus         8 ~~~~~~~~~~i~~~L~~~~i~i~~i~~   34 (61)
T cd04891           8 VPDKPGVAAKIFSALAEAGINVDMIVQ   34 (61)
T ss_pred             CCCCCcHHHHHHHHHHHcCCcEEEEEE
Confidence            488999999999999999999986544

This CD includes the N-terminal of the two ACT domains of the lysine-sensitive aspartokinase isoenzyme AKII of Bacillus subtilis (BS) strain 168, and the lysine plus threonine-sensitive aspartokinase of Corynebacterium glutamicum, as well as, the first and third, of four, ACT domains present in cyanobacteria AK. Also included are the N-terminal of the two ACT domains of the diaminopimelate-sensitive aspartokinase isoenzyme AKI found in Bacilli (Bacillus subtilis strain 168), Clostridia, and Actinobacteria bacterial species. Members of this CD belong to the superfamily of ACT regulatory domains.

>cd04921 ACT_AKi-HSDH-ThrA-like_1 ACT domains of the bifunctional enzyme aspartokinase (AK) - homoserine dehydrogenase (HSDH)

Probab=81.08  E-value=13  Score=24.48  Aligned_cols=66  Identities=18%  Similarity=0.225  Sum_probs=39.7

Q ss_pred             EEEEEe---cCcchHHHHHHHHHHhCCccEEEEEEEecCCeEEEEEEEEeCCCCCChHHHHHHHHHHHHHcCCC
Q 028501          131 LLYIET---ADRPGLLVEIMKIIADVNVDVESAEIDTEGLVAKDKFHVSYGGAALNSSLSQVLVNCLRYYLRRP  201 (208)
Q Consensus       131 ~i~v~~---~Dr~GlL~~i~~~l~~~~i~I~~a~i~t~~~~~~~~f~v~~~g~~~~~~~~~~l~~~l~~~l~~~  201 (208)
                      .|++.|   .+.+|+++++.++|++.|+++......+.+  ..-.|.+..+ ..  +...+.|.+++...+.+.
T Consensus         3 ~I~vvg~~~~~~~~~~~~i~~~L~~~~I~v~~i~~~~~~--~~isf~v~~~-d~--~~~~~~l~~~~~~~~~~~   71 (80)
T cd04921           3 LINIEGTGMVGVPGIAARIFSALARAGINVILISQASSE--HSISFVVDES-DA--DKALEALEEEFALEIKAG   71 (80)
T ss_pred             EEEEEcCCCCCCccHHHHHHHHHHHCCCcEEEEEecCCc--ceEEEEEeHH-HH--HHHHHHHHHHHHhhhhhC
Confidence            455533   378999999999999999999877654332  2223555431 11  122355666655555443

This CD includes the first of two ACT domains of the bifunctional enzyme aspartokinase (AK) - homoserine dehydrogenase (HSDH). The ACT domains are positioned between the N-terminal catalytic domain of AK and the C-terminal HSDH domain found in bacteria (Escherichia coli (EC) ThrA) and higher plants (Zea mays AK-HSDH). AK and HSDH are the first and third enzymes in the biosynthetic pathway of the aspartate family of amino acids. AK catalyzes the phosphorylation of Asp to P-aspartyl phosphate. HSDH catalyzes the NADPH-dependent conversion of Asp 3-semialdehyde to homoserine. HSDH is the first committed reaction in the branch of the pathway that leads to Thr and Met. In E. coli, ThrA is subject to allosteric regulation by the end product L-threonine and the native enzyme is reported to be tetrameric. As with bacteria, plant AK and HSDH are feedback inhibited by pat

>PRK00907 hypothetical protein; Provisional

Probab=80.08  E-value=13  Score=26.24  Aligned_cols=65  Identities=6%  Similarity=0.059  Sum_probs=45.2

Q ss_pred             CeEEEEEEeCCcccHHHHHHHHHHHCCceEEEEEE----EecCCeeEEEEEEeeCCCCCCCCCHHHHHHHHHHHHH
Q 028501           13 DATIVQLSFGDRLGALIDTMNALKDLGLDVAKGTV----NTEGSVKQTKFFITRLDTGRKVEDPDLLERIRLTIIN   84 (208)
Q Consensus        13 ~~~~v~v~~~DrpGLl~~i~~~L~~~gl~I~~a~i----~t~~~~~~d~F~v~~~~~g~~~~~~~~~~~l~~~L~~   84 (208)
                      ..+-+.|.|.+++++...|..++..+.-.....++    ++.|.+..-++.|...       +.+.++.|.+.|.+
T Consensus        16 c~fpiKVmG~a~~~l~~~V~~vv~~h~p~~~~~~i~~r~Ss~GkY~Svtv~i~at-------s~eQld~iY~~L~~   84 (92)
T PRK00907         16 GTFELSAMGTAERGLETELPRLLAATGVELLQERISWKHSSSGKYVSVRIGFRAE-------SREQYDAAHQALRD   84 (92)
T ss_pred             CCCeEEEEEcCchhHHHHHHHHHHHhCCCCCcCcEEeccCCCCEEEEEEEEEEEC-------CHHHHHHHHHHHhh
Confidence            44789999999999999999999998776655555    4444454444555543       23566777666644

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	208
2ko1_A	88	CTR148A, GTP pyrophosphokinase; homodimer, alpha+b	2e-05

>2ko1_A CTR148A, GTP pyrophosphokinase; homodimer, alpha+beta, transferase, structural genomics, PSI-2, protein structure initiative; NMR {Chlorobaculum tepidum} PDB: 3ibw_A Length = 88

 Score = 40.7 bits (96), Expect = 2e-05
 Identities = 5/45 (11%), Positives = 20/45 (44%)

Query: 132 LYIETADRPGLLVEIMKIIADVNVDVESAEIDTEGLVAKDKFHVS 176
           + I   D+ G+  +I  +I+  + ++ +  ++ +  +      + 
Sbjct: 8   IRIVGEDKNGMTNQITGVISKFDTNIRTIVLNAKDGIFTCNLMIF 52

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	208
2nyi_A	195	Unknown protein; protein structure initiative, PSI	99.82
1u8s_A	192	Glycine cleavage system transcriptional repressor,	99.79
3p96_A	415	Phosphoserine phosphatase SERB; ssgcid, structural	99.2
2f06_A	144	Conserved hypothetical protein; structural genomic	98.83
1zpv_A	91	ACT domain protein; structural genomics, PSI, prot	98.52
1zpv_A	91	ACT domain protein; structural genomics, PSI, prot	98.48
2nyi_A	195	Unknown protein; protein structure initiative, PSI	98.48
1u8s_A	192	Glycine cleavage system transcriptional repressor,	98.39
2ko1_A	88	CTR148A, GTP pyrophosphokinase; homodimer, alpha+b	98.26
2ko1_A	88	CTR148A, GTP pyrophosphokinase; homodimer, alpha+b	98.12
2re1_A	167	Aspartokinase, alpha and beta subunits; structural	97.99
3o1l_A	302	Formyltetrahydrofolate deformylase; structural gen	97.83
2dt9_A	167	Aspartokinase; protein-ligand complex, regulatory	97.82
3obi_A	288	Formyltetrahydrofolate deformylase; structural gen	97.76
3lou_A	292	Formyltetrahydrofolate deformylase; structural gen	97.74
3n0v_A	286	Formyltetrahydrofolate deformylase; formyl transfe	97.73
3o1l_A	302	Formyltetrahydrofolate deformylase; structural gen	97.73
2dtj_A	178	Aspartokinase; protein-ligand complex, regulatory	97.72
3nrb_A	287	Formyltetrahydrofolate deformylase; N-terminal ACT	97.7
3nrb_A	287	Formyltetrahydrofolate deformylase; N-terminal ACT	97.7
3lou_A	292	Formyltetrahydrofolate deformylase; structural gen	97.69
3obi_A	288	Formyltetrahydrofolate deformylase; structural gen	97.65
3p96_A	415	Phosphoserine phosphatase SERB; ssgcid, structural	97.64
3n0v_A	286	Formyltetrahydrofolate deformylase; formyl transfe	97.64
2f1f_A	164	Acetolactate synthase isozyme III small subunit; f	97.63
2pc6_A	165	Probable acetolactate synthase isozyme III (small;	97.58
3s1t_A	181	Aspartokinase; ACT domain, threonine binding, regu	97.42
2f1f_A	164	Acetolactate synthase isozyme III small subunit; f	97.25
2pc6_A	165	Probable acetolactate synthase isozyme III (small;	97.17
2jhe_A	190	Transcription regulator TYRR; aromatic hydrocarbon	97.14
2fgc_A	193	Acetolactate synthase, small subunit; regulatory s	97.14
1y7p_A	223	Hypothetical protein AF1403; structural genomics,	97.14
4go7_X	200	Aspartokinase; transferase; 2.00A {Mycobacterium t	97.1
3ab4_A	421	Aspartokinase; aspartate kinase, concerted inhibit	96.94
2fgc_A	193	Acetolactate synthase, small subunit; regulatory s	96.77
2jhe_A	190	Transcription regulator TYRR; aromatic hydrocarbon	96.64
2qmx_A	283	Prephenate dehydratase; APC86053, L-Phe inhibition	96.43
3luy_A	329	Probable chorismate mutase; structural genomics, A	96.36
2f06_A	144	Conserved hypothetical protein; structural genomic	96.23
1y7p_A	223	Hypothetical protein AF1403; structural genomics,	96.2
3mwb_A	313	Prephenate dehydratase; L-Phe, PSI, MCSG, structur	96.02
3c1m_A	473	Probable aspartokinase; allosteric inhibition, thr	95.99
1sc6_A	404	PGDH, D-3-phosphoglycerate dehydrogenase; alloster	95.97
2qmw_A	267	PDT, prephenate dehydratase; APC85812, prephenate	95.56
3tvi_A	446	Aspartokinase; structural genomics, ACT domains, r	95.48
1ygy_A	529	PGDH, D-3-phosphoglycerate dehydrogenase; oxidored	95.29
3l76_A	600	Aspartokinase; allostery, ACT domains, kinase tran	95.2
3l76_A	600	Aspartokinase; allostery, ACT domains, kinase tran	94.99
2cdq_A	510	Aspartokinase; aspartate kinase, amino acid metabo	94.05
3mah_A	157	Aspartokinase; aspartate kinase, structural genomi	93.95
3mtj_A	444	Homoserine dehydrogenase; rossmann-fold, PSI, MCSG	92.85
1sc6_A	404	PGDH, D-3-phosphoglycerate dehydrogenase; alloster	92.57
1ygy_A	529	PGDH, D-3-phosphoglycerate dehydrogenase; oxidored	92.23
1phz_A	429	Protein (phenylalanine hydroxylase); aromatic amin	91.72
3k5p_A	416	D-3-phosphoglycerate dehydrogenase; niaid, ssgcid,	91.56
2re1_A	167	Aspartokinase, alpha and beta subunits; structural	91.01
3k5p_A	416	D-3-phosphoglycerate dehydrogenase; niaid, ssgcid,	89.73
2dtj_A	178	Aspartokinase; protein-ligand complex, regulatory	88.76
2dt9_A	167	Aspartokinase; protein-ligand complex, regulatory	88.73
2qmx_A	283	Prephenate dehydratase; APC86053, L-Phe inhibition	87.8
3mwb_A	313	Prephenate dehydratase; L-Phe, PSI, MCSG, structur	85.98
3luy_A	329	Probable chorismate mutase; structural genomics, A	85.95
4go7_X	200	Aspartokinase; transferase; 2.00A {Mycobacterium t	83.4
2qmw_A	267	PDT, prephenate dehydratase; APC85812, prephenate	80.41
3s1t_A	181	Aspartokinase; ACT domain, threonine binding, regu	80.34

>2nyi_A Unknown protein; protein structure initiative, PSI, center for eukaryotic structural genomics, CESG, structural genomics; 1.80A {Galdieria sulphuraria}

Probab=99.82  E-value=1.3e-19  Score=144.70  Aligned_cols=157  Identities=15%  Similarity=0.179  Sum_probs=109.8

Q ss_pred             CeEEEEEEeCCcccHHHHHHHHHHHCCceEEEEEEEecCCeeEEEEEEeeCCCCCCCCCHHHHHHHHHHHHHhhccCCCC
Q 028501           13 DATIVQLSFGDRLGALIDTMNALKDLGLDVAKGTVNTEGSVKQTKFFITRLDTGRKVEDPDLLERIRLTIINNLLKYHPE   92 (208)
Q Consensus        13 ~~~~v~v~~~DrpGLl~~i~~~L~~~gl~I~~a~i~t~~~~~~d~F~v~~~~~g~~~~~~~~~~~l~~~L~~~l~~~~~~   92 (208)
                      ..++|+|+|+|||||++.|+++|+++|+||.++++++..+++.-.|.+...  +.  ..+.+++.|++.|...+.+    
T Consensus         4 ~~~~ltv~~~DrpGiva~vs~~La~~g~NI~da~q~~~~~~f~m~~~v~~~--~~--~~~~~~~~l~~~L~~~~~~----   75 (195)
T 2nyi_A            4 QSFVVSVAGSDRVGIVHDFSWALKNISANVESSRMACLGGDFAMIVLVSLN--AK--DGKLIQSALESALPGFQIS----   75 (195)
T ss_dssp             EEEEEEEEEECCTTHHHHHHHHHHHTTCEEEEEEEEEETTEEEEEEEEEES--SS--SSHHHHHHHHHHSTTCEEE----
T ss_pred             eEEEEEEEeCCCCcHHHHHHHHHHHCCCCEEEEEeEEECCeEEEEEEEEec--Cc--cchhHHHHHHHHHHHHHHh----
Confidence            457999999999999999999999999999999999988877557777654  22  1223456666665543321    


Q ss_pred             chhhhhccccccCCCCCcccCCccccEEEEecCCCCeEEEEEEecCcchHHHHHHHHHHhCCccEEEEEEEecC--CeEE
Q 028501           93 SSEQLAMGEAFGIKAPEKKLDVDIATHIHVKEDGPKRSLLYIETADRPGLLVEIMKIIADVNVDVESAEIDTEG--LVAK  170 (208)
Q Consensus        93 ~~~~l~~~~~~~~~~~~~~~~~~~~~~V~~~~~~~~~~~i~v~~~Dr~GlL~~i~~~l~~~~i~I~~a~i~t~~--~~~~  170 (208)
                      ..  +      ......       .+    .......++|+|.|+||||+++.|+++|+++|+||..++..+.+  ++..
T Consensus        76 ~~--~------~~~~~~-------~~----~~~~~~~~iltv~g~DrpGiva~Vt~~La~~g~nI~~~~~~t~~~~~~~~  136 (195)
T 2nyi_A           76 TR--R------ASSVAE-------RH----VSPDTREYELYVEGPDSEGIVEAVTAVLAKKGANIVELETETLPAPFAGF  136 (195)
T ss_dssp             EE--E------CCCC---------------CCTTEEEEEEEEEEECCTTHHHHHHHHHHHTTCEEEEEEEEEEECSSTTC
T ss_pred             cC--C------eEEEEe-------CC----cCCCCcEEEEEEEeCCCcCHHHHHHHHHHHcCCCEEEceeeecccccCCC
Confidence            00  0      000000       01    11223479999999999999999999999999999999999987  5567


Q ss_pred             EEEEEEe-CCCCCChHHHHHHHHHHHHHc
Q 028501          171 DKFHVSY-GGAALNSSLSQVLVNCLRYYL  198 (208)
Q Consensus       171 ~~f~v~~-~g~~~~~~~~~~l~~~l~~~l  198 (208)
                      +.|++.- -+.+ .... +.|+++|....
T Consensus       137 ~~F~m~~~~~~~-~~~~-~~l~~~l~~~a  163 (195)
T 2nyi_A          137 TLFRMGSRVAFP-FPLY-QEVVTALSRVE  163 (195)
T ss_dssp             EEEEEEEEEEEE-GGGH-HHHHHHHHHHH
T ss_pred             CeEEEEEEEEcC-CCcc-HHHHHHHHHHH
Confidence            8888875 2222 1223 56666665443

>1u8s_A Glycine cleavage system transcriptional repressor, putative; structural genomics, protein structure initiative (PSI), domain swapping; 2.45A {Vibrio cholerae} SCOP: d.58.18.5 d.58.18.5

Probab=99.79  E-value=2.6e-18  Score=136.48  Aligned_cols=154  Identities=14%  Similarity=0.175  Sum_probs=107.7

Q ss_pred             eEEEEEEeCCcccHHHHHHHHHHHCCceEEEEEEEecCCeeEEEEEEeeCCCCCCCCCHHHHHHHHHHHHHhhccCCCCc
Q 028501           14 ATIVQLSFGDRLGALIDTMNALKDLGLDVAKGTVNTEGSVKQTKFFITRLDTGRKVEDPDLLERIRLTIINNLLKYHPES   93 (208)
Q Consensus        14 ~~~v~v~~~DrpGLl~~i~~~L~~~gl~I~~a~i~t~~~~~~d~F~v~~~~~g~~~~~~~~~~~l~~~L~~~l~~~~~~~   93 (208)
                      ..+|+|+|+||||++++++++|+++|+||.++++++..+.+.-.|.+..+        ....+.|++.|.+.....  ..
T Consensus         6 ~~~itv~~~DrpGiva~vt~~La~~g~NI~d~~~~~~~~~f~~~~~v~~~--------~~~~~~l~~~L~~~~~~~--~~   75 (192)
T 1u8s_A            6 HLVITAVGTDRPGICNEVVRLVTQAGCNIIDSRIAMFGKEFTLLMLISGS--------PSNITRVETTLPLLGQQH--DL   75 (192)
T ss_dssp             EEEEEEEEECCTTHHHHHHHHHHHTTCEEEEEEEEEETTEEEEEEEEEEC--------HHHHHHHHHHHHHHHHHH--TC
T ss_pred             EEEEEEEcCCCCcHHHHHHHHHHHCCCCEEeeeeeecCCceEEEEEEecC--------CCCHHHHHHHHHHHHHhc--CC
Confidence            47899999999999999999999999999999999988887667777543        135678888887754321  00


Q ss_pred             hhhhhccccccCCCCCcccCCccccEEEEecCC-CCeEEEEEEecCcchHHHHHHHHHHhCCccEEEEEEEecCC----e
Q 028501           94 SEQLAMGEAFGIKAPEKKLDVDIATHIHVKEDG-PKRSLLYIETADRPGLLVEIMKIIADVNVDVESAEIDTEGL----V  168 (208)
Q Consensus        94 ~~~l~~~~~~~~~~~~~~~~~~~~~~V~~~~~~-~~~~~i~v~~~Dr~GlL~~i~~~l~~~~i~I~~a~i~t~~~----~  168 (208)
                      ...      ..+..+        ++     +.. ...++|+|.|+||||++++|+++|+++|+||.+++..|.+.    +
T Consensus        76 ~~~------~~~~~~--------~~-----~~~~~~~~~l~v~~~D~~Gil~~v~~~l~~~~~nI~~~~~~t~~~~~~~~  136 (192)
T 1u8s_A           76 ITM------MKRTSP--------HD-----HQTHAYTVEVYVESDDKLGLTEKFTQFFAQRQIGMASLSAQTISKDKLHS  136 (192)
T ss_dssp             EEE------EEEECC--------CC-----CCCCSEEEEEEEEESCCTTHHHHHHHHHHHTTCCEEEEEEEEEC------
T ss_pred             EEE------EEeCCC--------CC-----CccCCceEEEEEEeCCCccHHHHHHHHHHHcCCcHHHhhhhcccCCccCC
Confidence            000      110100        01     122 34789999999999999999999999999999999999874    5


Q ss_pred             EEEEEEEEe-CCCCCChHHHHHHHHHHHHH
Q 028501          169 AKDKFHVSY-GGAALNSSLSQVLVNCLRYY  197 (208)
Q Consensus       169 ~~~~f~v~~-~g~~~~~~~~~~l~~~l~~~  197 (208)
                      ..+.|+++- -+.+ .....+.|+++|...
T Consensus       137 ~~~~F~~~~~~~~~-~~~~~~~l~~~l~~~  165 (192)
T 1u8s_A          137 EQNQFHIAISARVD-SGCNLMQLQEEFDAL  165 (192)
T ss_dssp             --CEEEEEEEEEEC-TTSCHHHHHHHHHHH
T ss_pred             CCCEEEEEEEEeCC-CCCCHHHHHHHHHHH
Confidence            678888874 2211 111235555555543

>3p96_A Phosphoserine phosphatase SERB; ssgcid, structural genomics, structural genomics center for infectious disease, hydrolas; 2.05A {Mycobacterium avium}

Probab=99.20  E-value=7.9e-10  Score=96.82  Aligned_cols=138  Identities=8%  Similarity=0.044  Sum_probs=93.1

Q ss_pred             CeEEEEEEeCCcccHHHHHHHHHHHCCceEEEEEEEecCCeeEEEEEEeeCCCCCCCCCHHHHHHHHHHHHHhhccCCCC
Q 028501           13 DATIVQLSFGDRLGALIDTMNALKDLGLDVAKGTVNTEGSVKQTKFFITRLDTGRKVEDPDLLERIRLTIINNLLKYHPE   92 (208)
Q Consensus        13 ~~~~v~v~~~DrpGLl~~i~~~L~~~gl~I~~a~i~t~~~~~~d~F~v~~~~~g~~~~~~~~~~~l~~~L~~~l~~~~~~   92 (208)
                      ...+|+|.|+||||+++.|++.|+++|+||.+.+.+..++.|.-...+..+. ..     ...+.|++.|.. +...   
T Consensus        11 ~~~~lt~~g~Dr~Giv~~vs~~l~~~~~nI~d~~q~~~~~~f~~~~~~~~~~-~~-----~~~~~l~~~l~~-~~~~---   80 (415)
T 3p96_A           11 VSVLITVTGVDQPGVTATLFEVLSRHGVELLNVEQVVIRHRLTLGVLVCCPA-DV-----ADGPALRHDVEA-AIRK---   80 (415)
T ss_dssp             EEEEEEEEEECCTTHHHHHHHHHTTTTCEEEEEEEEEETTEEEEEEEEEECH-HH-----HTSHHHHHHHHH-HHHH---
T ss_pred             CeEEEEEEcCCCCCHHHHHHHHHHHCCCCEEEeeeEEECCEeEEEEEEEecC-Cc-----CCHHHHHHHHHH-HHHH---
Confidence            4578999999999999999999999999999999999888765444443221 10     012567777765 3220   


Q ss_pred             chhhhhccccccCCCCCcccCCccccEEEEecCCCCeEEEEEEecC-cchHHHHHHHHHHhCCccEEEEEEEecCCeEEE
Q 028501           93 SSEQLAMGEAFGIKAPEKKLDVDIATHIHVKEDGPKRSLLYIETAD-RPGLLVEIMKIIADVNVDVESAEIDTEGLVAKD  171 (208)
Q Consensus        93 ~~~~l~~~~~~~~~~~~~~~~~~~~~~V~~~~~~~~~~~i~v~~~D-r~GlL~~i~~~l~~~~i~I~~a~i~t~~~~~~~  171 (208)
                      ......    ......+        ++    .....++.+.+.|.| ++|++.+|+.+|+++|+||..++..+......-
T Consensus        81 ~~~~~~----~~~~~~~--------~~----~~~~~~~~~~llg~~~~~~~~~~i~~~l~~~~~Ni~~l~~~~~~~~~~~  144 (415)
T 3p96_A           81 VGLDVS----IERSDDV--------PI----IREPSTHTIFVLGRPITAAAFGAVAREVAALGVNIDLIRGVSDYPVIGL  144 (415)
T ss_dssp             TTCEEE----EEECSSS--------CS----SCCCCSEEEEEEESSCCHHHHHHHHHHHHHTTCEEEEEEEEESSSSEEE
T ss_pred             cCeEEE----EEECCcc--------cc----cCCCCcEEEEEEeCCCCHHHHHHHHHHHHHcCCCccceeeccCCCceEE
Confidence            111110    0100000        00    112347899999999 999999999999999999999988774333433


Q ss_pred             EEEEE
Q 028501          172 KFHVS  176 (208)
Q Consensus       172 ~f~v~  176 (208)
                      .|++.
T Consensus       145 ~~~v~  149 (415)
T 3p96_A          145 ELRVS  149 (415)
T ss_dssp             EEEEE
T ss_pred             EEEee
Confidence            46664

>2f06_A Conserved hypothetical protein; structural genomics hypothetical protein, PSI, protein struc initiative; HET: MSE HIS; 2.10A {Bacteroides thetaiotaomicron} SCOP: d.58.18.11 d.58.18.11

Probab=98.83  E-value=3e-07  Score=68.99  Aligned_cols=112  Identities=12%  Similarity=0.175  Sum_probs=76.1

Q ss_pred             EEEEEEeCCcccHHHHHHHHHHHCCceEEEEEEEecCCeeEEEEEEeeCCCCCCCCCHHHHHHHHHHHHHhhccCCCCch
Q 028501           15 TIVQLSFGDRLGALIDTMNALKDLGLDVAKGTVNTEGSVKQTKFFITRLDTGRKVEDPDLLERIRLTIINNLLKYHPESS   94 (208)
Q Consensus        15 ~~v~v~~~DrpGLl~~i~~~L~~~gl~I~~a~i~t~~~~~~d~F~v~~~~~g~~~~~~~~~~~l~~~L~~~l~~~~~~~~   94 (208)
                      ..++|..+|+||.++++++.|++.|+||..-.+....+.-.-.|.+  .       ++   ++.++.|++ . +  .   
T Consensus         7 ~~i~v~v~d~~G~l~~i~~~la~~~inI~~i~~~~~~~~~~~~~~~--~-------d~---~~a~~~L~~-~-G--~---   67 (144)
T 2f06_A            7 KQLSIFLENKSGRLTEVTEVLAKENINLSALCIAENADFGILRGIV--S-------DP---DKAYKALKD-N-H--F---   67 (144)
T ss_dssp             EEEEEEECSSSSHHHHHHHHHHHTTCCEEEEEEEECSSCEEEEEEE--S-------CH---HHHHHHHHH-T-T--C---
T ss_pred             EEEEEEecCCCcHHHHHHHHHHHCCCCEEEEEEEecCCCCEEEEEe--C-------CH---HHHHHHHHH-c-C--C---
Confidence            5788999999999999999999999999987776544422212332  2       12   233344443 1 1  0   


Q ss_pred             hhhhccccccCCCCCcccCCccccEEEEecCCCCeEEEEEEecCcchHHHHHHHHHHhCCccEEEEEEEecCCeEEEEEE
Q 028501           95 EQLAMGEAFGIKAPEKKLDVDIATHIHVKEDGPKRSLLYIETADRPGLLVEIMKIIADVNVDVESAEIDTEGLVAKDKFH  174 (208)
Q Consensus        95 ~~l~~~~~~~~~~~~~~~~~~~~~~V~~~~~~~~~~~i~v~~~Dr~GlL~~i~~~l~~~~i~I~~a~i~t~~~~~~~~f~  174 (208)
                                 .             +.      ...++.+..+|+||.+++++++|++.|+||.++.+...+.+...+|.
T Consensus        68 -----------~-------------v~------~~svv~v~~~d~pGvla~i~~~L~~~~InI~~~~~~~~~~~~~~~i~  117 (144)
T 2f06_A           68 -----------A-------------VN------ITDVVGISCPNVPGALAKVLGFLSAEGVFIEYMYSFANNNVANVVIR  117 (144)
T ss_dssp             -----------C-------------EE------EEEEEEEEEESSTTHHHHHHHHHHHTTCCEEEEEEEEETTEEEEEEE
T ss_pred             -----------e-------------Ee------eeeEEEEEeCCCCcHHHHHHHHHHHCCCCEEEEEEEccCCcEEEEEE
Confidence                       0             00      01357777899999999999999999999988776533455555555


Q ss_pred             E
Q 028501          175 V  175 (208)
Q Consensus       175 v  175 (208)
                      +
T Consensus       118 ~  118 (144)
T 2f06_A          118 P  118 (144)
T ss_dssp             E
T ss_pred             e
Confidence            4

>1zpv_A ACT domain protein; structural genomics, PSI, protein structure INIT midwest center for structural genomics, MCSG, unknown funct; 1.90A {Streptococcus pneumoniae} SCOP: d.58.18.7

Probab=98.52  E-value=1.1e-06  Score=60.56  Aligned_cols=48  Identities=13%  Similarity=0.218  Sum_probs=42.1

Q ss_pred             eEEEEEEecCcchHHHHHHHHHHhCCccEEEEEEEecCCeEEEEEEEE
Q 028501          129 RSLLYIETADRPGLLVEIMKIIADVNVDVESAEIDTEGLVAKDKFHVS  176 (208)
Q Consensus       129 ~~~i~v~~~Dr~GlL~~i~~~l~~~~i~I~~a~i~t~~~~~~~~f~v~  176 (208)
                      .+.+.+.|.||||+|++|+.+|+++|+||.++...+..+.....+.+.
T Consensus         5 ~~~l~v~~~DrpGila~vt~~la~~~~NI~~i~~~~~~~~~~~~i~v~   52 (91)
T 1zpv_A            5 KAIITVVGKDKSGIVAGVSGKIAELGLNIDDISQTVLDEYFTMMAVVS   52 (91)
T ss_dssp             EEEEEEEESCCTTHHHHHHHHHHHTTCEEEEEEEEEETTEEEEEEEEE
T ss_pred             eEEEEEEECCCCCHHHHHHHHHHHcCCCEEEEEeEEEcCEEEEEEEEE
Confidence            578999999999999999999999999999999988776666666664

>1zpv_A ACT domain protein; structural genomics, PSI, protein structure INIT midwest center for structural genomics, MCSG, unknown funct; 1.90A {Streptococcus pneumoniae} SCOP: d.58.18.7

Probab=98.48  E-value=1.2e-06  Score=60.28  Aligned_cols=65  Identities=11%  Similarity=0.112  Sum_probs=50.8

Q ss_pred             CeEEEEEEeCCcccHHHHHHHHHHHCCceEEEEEEEecCCeeEEEEEEeeCCCCCCCCCHHHHHHHHHHHHH
Q 028501           13 DATIVQLSFGDRLGALIDTMNALKDLGLDVAKGTVNTEGSVKQTKFFITRLDTGRKVEDPDLLERIRLTIIN   84 (208)
Q Consensus        13 ~~~~v~v~~~DrpGLl~~i~~~L~~~gl~I~~a~i~t~~~~~~d~F~v~~~~~g~~~~~~~~~~~l~~~L~~   84 (208)
                      ....|+|.++||||++++|+++|+++|+||.+....+..+.+.-.+.+.-+  +.     ..++.|.+.|.+
T Consensus         4 ~~~~l~v~~~DrpGila~vt~~la~~~~NI~~i~~~~~~~~~~~~i~v~~~--~~-----~~l~~l~~~L~~   68 (91)
T 1zpv_A            4 MKAIITVVGKDKSGIVAGVSGKIAELGLNIDDISQTVLDEYFTMMAVVSSD--EK-----QDFTYLRNEFEA   68 (91)
T ss_dssp             EEEEEEEEESCCTTHHHHHHHHHHHTTCEEEEEEEEEETTEEEEEEEEEES--SC-----CCHHHHHHHHHH
T ss_pred             ceEEEEEEECCCCCHHHHHHHHHHHcCCCEEEEEeEEEcCEEEEEEEEEeC--CC-----CCHHHHHHHHHH
Confidence            346899999999999999999999999999999998887666555656433  21     234677777766

>2nyi_A Unknown protein; protein structure initiative, PSI, center for eukaryotic structural genomics, CESG, structural genomics; 1.80A {Galdieria sulphuraria}

Probab=98.48  E-value=2.2e-07  Score=73.49  Aligned_cols=71  Identities=11%  Similarity=-0.024  Sum_probs=54.1

Q ss_pred             CCeEEEEEEeCCcccHHHHHHHHHHHCCceEEEEEEEecC--CeeEEEEEEeeCCCCCCCCCHHHHHHHHHHHHHhh
Q 028501           12 SDATIVQLSFGDRLGALIDTMNALKDLGLDVAKGTVNTEG--SVKQTKFFITRLDTGRKVEDPDLLERIRLTIINNL   86 (208)
Q Consensus        12 ~~~~~v~v~~~DrpGLl~~i~~~L~~~gl~I~~a~i~t~~--~~~~d~F~v~~~~~g~~~~~~~~~~~l~~~L~~~l   86 (208)
                      ...+.|+|.|+||||+++.|+++|+++|+||.+++.+|.+  +...+.|++.... +.+  ++.. +.|++.|....
T Consensus        91 ~~~~iltv~g~DrpGiva~Vt~~La~~g~nI~~~~~~t~~~~~~~~~~F~m~~~~-~~~--~~~~-~~l~~~l~~~a  163 (195)
T 2nyi_A           91 TREYELYVEGPDSEGIVEAVTAVLAKKGANIVELETETLPAPFAGFTLFRMGSRV-AFP--FPLY-QEVVTALSRVE  163 (195)
T ss_dssp             EEEEEEEEEEECCTTHHHHHHHHHHHTTCEEEEEEEEEEECSSTTCEEEEEEEEE-EEE--GGGH-HHHHHHHHHHH
T ss_pred             CcEEEEEEEeCCCcCHHHHHHHHHHHcCCCEEEceeeecccccCCCCeEEEEEEE-EcC--CCcc-HHHHHHHHHHH
Confidence            3567999999999999999999999999999999999987  4445667666543 222  1234 77777777643

>1u8s_A Glycine cleavage system transcriptional repressor, putative; structural genomics, protein structure initiative (PSI), domain swapping; 2.45A {Vibrio cholerae} SCOP: d.58.18.5 d.58.18.5

Probab=98.39  E-value=2.2e-06  Score=67.36  Aligned_cols=65  Identities=15%  Similarity=0.164  Sum_probs=52.2

Q ss_pred             eEEEEEEecCcchHHHHHHHHHHhCCccEEEEEEEecCCeEEEEEEEEeCCCCCChHHHHHHHHHHHHHc
Q 028501          129 RSLLYIETADRPGLLVEIMKIIADVNVDVESAEIDTEGLVAKDKFHVSYGGAALNSSLSQVLVNCLRYYL  198 (208)
Q Consensus       129 ~~~i~v~~~Dr~GlL~~i~~~l~~~~i~I~~a~i~t~~~~~~~~f~v~~~g~~~~~~~~~~l~~~l~~~l  198 (208)
                      .++|.|.|+||||+++.|+.+|+++|+||..+++.+..+.....|.+....     ...+.|+++|..++
T Consensus         6 ~~~itv~~~DrpGiva~vt~~La~~g~NI~d~~~~~~~~~f~~~~~v~~~~-----~~~~~l~~~L~~~~   70 (192)
T 1u8s_A            6 HLVITAVGTDRPGICNEVVRLVTQAGCNIIDSRIAMFGKEFTLLMLISGSP-----SNITRVETTLPLLG   70 (192)
T ss_dssp             EEEEEEEEECCTTHHHHHHHHHHHTTCEEEEEEEEEETTEEEEEEEEEECH-----HHHHHHHHHHHHHH
T ss_pred             EEEEEEEcCCCCcHHHHHHHHHHHCCCCEEeeeeeecCCceEEEEEEecCC-----CCHHHHHHHHHHHH
Confidence            578999999999999999999999999999999998888877777776431     23456666655433

>2ko1_A CTR148A, GTP pyrophosphokinase; homodimer, alpha+beta, transferase, structural genomics, PSI-2, protein structure initiative; NMR {Chlorobaculum tepidum} PDB: 3ibw_A

Probab=98.26  E-value=9.3e-06  Score=55.13  Aligned_cols=48  Identities=10%  Similarity=0.213  Sum_probs=40.3

Q ss_pred             eEEEEEEecCcchHHHHHHHHHHhCCccEEEEEEEecCCeEEEEEEEE
Q 028501          129 RSLLYIETADRPGLLVEIMKIIADVNVDVESAEIDTEGLVAKDKFHVS  176 (208)
Q Consensus       129 ~~~i~v~~~Dr~GlL~~i~~~l~~~~i~I~~a~i~t~~~~~~~~f~v~  176 (208)
                      .+.+.+.+.||||+|++|+++|++.|+||.++.+.+.++.+...|.+.
T Consensus         5 ~~~l~v~~~Dr~G~L~~I~~~la~~~inI~~i~~~~~~~~~~~~i~v~   52 (88)
T 2ko1_A            5 LAGIRIVGEDKNGMTNQITGVISKFDTNIRTIVLNAKDGIFTCNLMIF   52 (88)
T ss_dssp             EEEEEEEEECCTTHHHHHHHHHTTSSSCEEEEEEEECSSEEEEEEEEE
T ss_pred             EEEEEEEEECCCcHHHHHHHHHHHCCCCeEEEEEEEcCCEEEEEEEEE
Confidence            478999999999999999999999999999999988666444455553

>2ko1_A CTR148A, GTP pyrophosphokinase; homodimer, alpha+beta, transferase, structural genomics, PSI-2, protein structure initiative; NMR {Chlorobaculum tepidum} PDB: 3ibw_A

Probab=98.12  E-value=2e-05  Score=53.45  Aligned_cols=48  Identities=8%  Similarity=0.138  Sum_probs=39.7

Q ss_pred             eEEEEEEeCCcccHHHHHHHHHHHCCceEEEEEEEecCCeeEEEEEEe
Q 028501           14 ATIVQLSFGDRLGALIDTMNALKDLGLDVAKGTVNTEGSVKQTKFFIT   61 (208)
Q Consensus        14 ~~~v~v~~~DrpGLl~~i~~~L~~~gl~I~~a~i~t~~~~~~d~F~v~   61 (208)
                      .+.|.|.++||||+|++|+++|++.|+||.+..+.+.++.+...|.+.
T Consensus         5 ~~~l~v~~~Dr~G~L~~I~~~la~~~inI~~i~~~~~~~~~~~~i~v~   52 (88)
T 2ko1_A            5 LAGIRIVGEDKNGMTNQITGVISKFDTNIRTIVLNAKDGIFTCNLMIF   52 (88)
T ss_dssp             EEEEEEEEECCTTHHHHHHHHHTTSSSCEEEEEEEECSSEEEEEEEEE
T ss_pred             EEEEEEEEECCCcHHHHHHHHHHHCCCCeEEEEEEEcCCEEEEEEEEE
Confidence            357889999999999999999999999999999988766444445444

>2re1_A Aspartokinase, alpha and beta subunits; structural genomics, protein structure initiative, midwest center for structural genomics; 2.75A {Neisseria meningitidis MC58}

Probab=97.99  E-value=0.00022  Score=54.70  Aligned_cols=111  Identities=13%  Similarity=0.167  Sum_probs=73.6

Q ss_pred             CCeEEEEEEe-CCcccHHHHHHHHHHHCCceEEEEEEEecCCe-eEEEEEEeeCCCCCCCCCHHHHHHHHHHHHHhhccC
Q 028501           12 SDATIVQLSF-GDRLGALIDTMNALKDLGLDVAKGTVNTEGSV-KQTKFFITRLDTGRKVEDPDLLERIRLTIINNLLKY   89 (208)
Q Consensus        12 ~~~~~v~v~~-~DrpGLl~~i~~~L~~~gl~I~~a~i~t~~~~-~~d~F~v~~~~~g~~~~~~~~~~~l~~~L~~~l~~~   89 (208)
                      ++...|+|.+ +|+||.++++++.|+++|++|..-......++ ..-.|+|...+          .++..+.|++ +.. 
T Consensus        23 ~~~~~i~v~~~~~~~G~~~~if~~La~~~Invd~i~~s~~~~g~~~isf~v~~~~----------~~~a~~~l~~-~~~-   90 (167)
T 2re1_A           23 KNQARINVRGVPDKPGVAYQILGAVADANIEVDMIIQNVGSEGTTDFSFTVPRGD----------YKQTLEILSE-RQD-   90 (167)
T ss_dssp             CCCEEEEEEEEECCTTHHHHHHHHHHTTTCCCCCEEEC----CEEEEEEEECGGG----------HHHHHHHHHH-SST-
T ss_pred             CCEEEEEEecCCCCcCHHHHHHHHHHHcCCeEEEEEcCCCCCCeeEEEEEEechH----------HHHHHHHHHH-HHH-
Confidence            4668899994 99999999999999999999995544332222 23346664321          1333344444 211 


Q ss_pred             CCCchhhhhccccccCCCCCcccCCccccEEEEecCCCCeEEEEEEecC---cchHHHHHHHHHHhCCccEEEEE
Q 028501           90 HPESSEQLAMGEAFGIKAPEKKLDVDIATHIHVKEDGPKRSLLYIETAD---RPGLLVEIMKIIADVNVDVESAE  161 (208)
Q Consensus        90 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~V~~~~~~~~~~~i~v~~~D---r~GlL~~i~~~l~~~~i~I~~a~  161 (208)
                        +.          +         +   ..|.+.   .+...+.|.|.+   +||+++.+..+|++.|+||....
T Consensus        91 --~l----------~---------~---~~i~~~---~~~a~vsvvG~~m~~~~Gv~a~i~~aL~~~~InI~~is  138 (167)
T 2re1_A           91 --SI----------G---------A---ASIDGD---DTVCKVSAVGLGMRSHVGVAAKIFRTLAEEGINIQMIS  138 (167)
T ss_dssp             --TT----------T---------C---SEEEEE---SSEEEEEEECSSCTTCCCHHHHHHHHHHHTTCCCCEEE
T ss_pred             --Hc----------C---------C---ceEEec---CCEEEEEEECCCcCCCcCHHHHHHHHHHHCCCcEEEEE
Confidence              00          0         0   113332   245789999987   99999999999999999999854

>3o1l_A Formyltetrahydrofolate deformylase; structural genomics, joint center for structural genomics, J protein structure initiative; HET: MSE; 2.20A {Pseudomonas syringae PV}

Probab=97.83  E-value=8.5e-05  Score=62.54  Aligned_cols=66  Identities=12%  Similarity=0.052  Sum_probs=47.3

Q ss_pred             CeEEEEEEeCCcccHHHHHHHHHHHCCceEEEEEEEec--CCeeEEEEEEeeCCCCCCCCCHHHHHHHHHHHHH
Q 028501           13 DATIVQLSFGDRLGALIDTMNALKDLGLDVAKGTVNTE--GSVKQTKFFITRLDTGRKVEDPDLLERIRLTIIN   84 (208)
Q Consensus        13 ~~~~v~v~~~DrpGLl~~i~~~L~~~gl~I~~a~i~t~--~~~~~d~F~v~~~~~g~~~~~~~~~~~l~~~L~~   84 (208)
                      ....|+|.|+||||+++.|++.|+++|+||.+++.++.  .+.|+-...+..+  +...    ..+.|++.|..
T Consensus        21 ~~~iLtv~c~DrpGIVa~VS~~La~~g~NI~d~~q~~d~~~g~FfMr~~~~~~--~~~~----~~~~L~~~l~~   88 (302)
T 3o1l_A           21 RTFRLVIACPDRVGIVAKVSNFLASHNGWITEASHHSDNLSGWFFMRHEIRAD--TLPF----DLDGFREAFTP   88 (302)
T ss_dssp             CEEEEEEEEECCTTHHHHHHHHHHHTTCCEEEEEEEEETTTTEEEEEEEEEGG--GSSS----CHHHHHHHHHH
T ss_pred             ceEEEEEECCCCCCHHHHHHHHHHHCCCCEEEeeEEecCCCCeEEEEEEEecC--CCCC----CHHHHHHHHHH
Confidence            44689999999999999999999999999999999976  3445323333222  1111    24667777655

>2dt9_A Aspartokinase; protein-ligand complex, regulatory subunit, transferase; 2.15A {Thermus thermophilus} PDB: 2zho_A

Probab=97.82  E-value=0.00047  Score=52.73  Aligned_cols=111  Identities=14%  Similarity=0.166  Sum_probs=72.3

Q ss_pred             CCCeEEEEEEe-CCcccHHHHHHHHHHHCCceEEEEEEEecC--C-eeEEEEEEeeCCCCCCCCCHHHHHHHHHHHHHhh
Q 028501           11 NSDATIVQLSF-GDRLGALIDTMNALKDLGLDVAKGTVNTEG--S-VKQTKFFITRLDTGRKVEDPDLLERIRLTIINNL   86 (208)
Q Consensus        11 ~~~~~~v~v~~-~DrpGLl~~i~~~L~~~gl~I~~a~i~t~~--~-~~~d~F~v~~~~~g~~~~~~~~~~~l~~~L~~~l   86 (208)
                      .++...|+|.+ +|+||.++++.++|++.|++|.--......  . ..--.|.|...+       .   ++..+.|.+..
T Consensus        13 ~~~~a~Itv~g~~~~~G~~a~if~~La~~~InVd~I~q~~~~~~~g~~~isf~V~~~d-------~---~~a~~~L~~~~   82 (167)
T 2dt9_A           13 DLDHAQIGLIGIPDQPGIAAKVFQALAERGIAVDMIIQGVPGHDPSRQQMAFTVKKDF-------A---QEALEALEPVL   82 (167)
T ss_dssp             ECSEEEEEEEEEECSTTHHHHHHHHHHHHTCCCSCEEBCCCCSCTTEEEEEEEEEGGG-------H---HHHHHHHHHHH
T ss_pred             eCCEEEEEEecCCCCCCHHHHHHHHHHHcCCcEEEEEcCCCCCCCCceEEEEEEehHH-------H---HHHHHHHHHHH
Confidence            45678888886 899999999999999999999854332221  1 222346665332       1   22233343311


Q ss_pred             ccCCCCchhhhhccccccCCCCCcccCCccccEEEEecCCCCeEEEEEEecC---cchHHHHHHHHHHhCCccEEEEE
Q 028501           87 LKYHPESSEQLAMGEAFGIKAPEKKLDVDIATHIHVKEDGPKRSLLYIETAD---RPGLLVEIMKIIADVNVDVESAE  161 (208)
Q Consensus        87 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~V~~~~~~~~~~~i~v~~~D---r~GlL~~i~~~l~~~~i~I~~a~  161 (208)
                      ..        +               .+    .|.++.   +...+.|.|.+   +||+++.+.++|++.|+||....
T Consensus        83 ~~--------~---------------~~----~v~~~~---~~a~vsvVG~gm~~~~Gv~a~~f~aL~~~~InI~~is  130 (167)
T 2dt9_A           83 AE--------I---------------GG----EAILRP---DIAKVSIVGVGLASTPEVPAKMFQAVASTGANIEMIA  130 (167)
T ss_dssp             HH--------H---------------CC----EEEEEC---SEEEEEEEESSGGGSTHHHHHHHHHHHHTTCCCCEEE
T ss_pred             HH--------h---------------CC----cEEEeC---CEEEEEEECCCcccCcCHHHHHHHHHHHCCCCEEEEE
Confidence            10        0               01    133322   34788888886   99999999999999999995553

>3obi_A Formyltetrahydrofolate deformylase; structural genomics, joint center for structural genomics, J protein structure initiative; HET: MSE; 1.95A {Rhodopseudomonas palustris}

Probab=97.76  E-value=0.00013  Score=60.93  Aligned_cols=65  Identities=14%  Similarity=0.140  Sum_probs=46.6

Q ss_pred             eEEEEEEeCCcccHHHHHHHHHHHCCceEEEEEEEecC--CeeEEEEEEeeCCCCCCCCCHHHHHHHHHHHHH
Q 028501           14 ATIVQLSFGDRLGALIDTMNALKDLGLDVAKGTVNTEG--SVKQTKFFITRLDTGRKVEDPDLLERIRLTIIN   84 (208)
Q Consensus        14 ~~~v~v~~~DrpGLl~~i~~~L~~~gl~I~~a~i~t~~--~~~~d~F~v~~~~~g~~~~~~~~~~~l~~~L~~   84 (208)
                      ...|+|.|+||||+++.|++.|+++|+||.+.+.++..  +.|+-...+..+  ....    ..+.|++.|..
T Consensus         6 ~~iLtv~g~DrpGIVa~Vs~~La~~g~NI~d~~q~~d~~~g~Ffmr~~~~~~--~~~~----~~~~L~~~f~~   72 (288)
T 3obi_A            6 QYVLTLSCPDRAGIVSAVSTFLFENGQNILDAQQYNDTESGHFFMRVVFNAA--AKVI----PLASLRTGFGV   72 (288)
T ss_dssp             EEEEEEEEECCTTHHHHHHHHHHHTTEEEEEEEEEEETTTTEEEEEEEEEES--SCCC----CHHHHHHHHHH
T ss_pred             eEEEEEECCCCCCHHHHHHHHHHHCCCcEEeeeeeecCCCCceEEEEEEEcC--CCCC----CHHHHHHHHHH
Confidence            46899999999999999999999999999999998543  344333333323  2111    24667777665

>3lou_A Formyltetrahydrofolate deformylase; structural genomics, JOI for structural genomics, JCSG, protein structure initiative hydrolase; HET: MSE; 1.90A {Burkholderia mallei}

Probab=97.74  E-value=0.00019  Score=60.13  Aligned_cols=37  Identities=8%  Similarity=0.189  Sum_probs=34.7

Q ss_pred             CeEEEEEEecCcchHHHHHHHHHHhCCccEEEEEEEe
Q 028501          128 KRSLLYIETADRPGLLVEIMKIIADVNVDVESAEIDT  164 (208)
Q Consensus       128 ~~~~i~v~~~Dr~GlL~~i~~~l~~~~i~I~~a~i~t  164 (208)
                      ..+++++.|+||||+++.||++|+++|+||.++...+
T Consensus         9 ~~~vLtv~c~Dr~GIVa~Vs~~La~~g~NI~d~~q~~   45 (292)
T 3lou_A            9 HQFVLTLSCPSAAGQVAAVVGLLDRHRCYVDELTVFD   45 (292)
T ss_dssp             CEEEEEEEEESCSCHHHHHHHHHHHTTEEEEEEEEEE
T ss_pred             CcEEEEEEcCCCCCHHHHHHHHHHHCCCCEEeeEEEe
Confidence            3589999999999999999999999999999999885

>3n0v_A Formyltetrahydrofolate deformylase; formyl transferase, ACT domain, structural genomics, joint C structural genomics, JCSG; HET: MSE; 2.25A {Pseudomonas putida}

Probab=97.73  E-value=0.00016  Score=60.49  Aligned_cols=65  Identities=11%  Similarity=-0.024  Sum_probs=46.8

Q ss_pred             CeEEEEEEeCCcccHHHHHHHHHHHCCceEEEEEEEecC--CeeEEEEEEeeCCCCCCCCCHHHHHHHHHHHHH
Q 028501           13 DATIVQLSFGDRLGALIDTMNALKDLGLDVAKGTVNTEG--SVKQTKFFITRLDTGRKVEDPDLLERIRLTIIN   84 (208)
Q Consensus        13 ~~~~v~v~~~DrpGLl~~i~~~L~~~gl~I~~a~i~t~~--~~~~d~F~v~~~~~g~~~~~~~~~~~l~~~L~~   84 (208)
                      ....|+|.|+||||+++.+++.|+++|+||.+.+.++..  +.|.-...+..+  + ..    ..+.|++.|..
T Consensus         7 ~~~vLtv~c~DrpGIVa~Vs~~La~~g~NI~d~~q~~d~~~g~Ffmr~~~~~~--~-~~----~~~~L~~~f~~   73 (286)
T 3n0v_A            7 DTWILTADCPSMLGTVDVVTRYLFEQRCYVTEHHSFDDRQSGRFFIRVEFRQP--D-DF----DEAGFRAGLAE   73 (286)
T ss_dssp             CCEEEEEEEECCTTHHHHHHHHHHHTTCEEEEEEEEEETTTTEEEEEEEEECC--S-SC----CHHHHHHHHHH
T ss_pred             CcEEEEEEeCCCCCHHHHHHHHHHHCCCCeeeeeeeccCCCCeeEEEEEEecC--C-CC----CHHHHHHHHHH
Confidence            346899999999999999999999999999999998643  344322223222  2 11    24677777765

>3o1l_A Formyltetrahydrofolate deformylase; structural genomics, joint center for structural genomics, J protein structure initiative; HET: MSE; 2.20A {Pseudomonas syringae PV}

Probab=97.73  E-value=0.00029  Score=59.25  Aligned_cols=39  Identities=21%  Similarity=0.280  Sum_probs=35.9

Q ss_pred             CCeEEEEEEecCcchHHHHHHHHHHhCCccEEEEEEEec
Q 028501          127 PKRSLLYIETADRPGLLVEIMKIIADVNVDVESAEIDTE  165 (208)
Q Consensus       127 ~~~~~i~v~~~Dr~GlL~~i~~~l~~~~i~I~~a~i~t~  165 (208)
                      ...+++++.|+||||+++.||.+|+++|+||..+...+.
T Consensus        20 ~~~~iLtv~c~DrpGIVa~VS~~La~~g~NI~d~~q~~d   58 (302)
T 3o1l_A           20 MRTFRLVIACPDRVGIVAKVSNFLASHNGWITEASHHSD   58 (302)
T ss_dssp             CCEEEEEEEEECCTTHHHHHHHHHHHTTCCEEEEEEEEE
T ss_pred             cceEEEEEECCCCCCHHHHHHHHHHHCCCCEEEeeEEec
Confidence            356899999999999999999999999999999998865

>2dtj_A Aspartokinase; protein-ligand complex, regulatory subunit, transferase; HET: CIT; 1.58A {Corynebacterium glutamicum} PDB: 3aaw_B* 3ab2_B 3ab4_B*

Probab=97.72  E-value=0.0004  Score=53.82  Aligned_cols=112  Identities=20%  Similarity=0.262  Sum_probs=73.0

Q ss_pred             CCCeEEEEEE-eCCcccHHHHHHHHHHHCCceEEEEEEEecC--C-eeEEEEEEeeCCCCCCCCCHHHHHHHHHHHHHhh
Q 028501           11 NSDATIVQLS-FGDRLGALIDTMNALKDLGLDVAKGTVNTEG--S-VKQTKFFITRLDTGRKVEDPDLLERIRLTIINNL   86 (208)
Q Consensus        11 ~~~~~~v~v~-~~DrpGLl~~i~~~L~~~gl~I~~a~i~t~~--~-~~~d~F~v~~~~~g~~~~~~~~~~~l~~~L~~~l   86 (208)
                      .++.+.|+|. .+|+||.++++++.|++.|++|.--..++..  + ..--.|.+...          ..++..+.|++ +
T Consensus        12 ~~~~~~Itv~~~~~~~G~~a~if~~La~~~InId~i~~s~~~~~~~~~~isf~v~~~----------d~~~a~~~l~~-~   80 (178)
T 2dtj_A           12 DKSEAKVTVLGISDKPGEAAKVFRALADAEINIDMVLQNVSSVEDGTTDITFTCPRS----------DGRRAMEILKK-L   80 (178)
T ss_dssp             ECSEEEEEEEEEECSTTHHHHHHHHHHHTTCCCCEEEECCCCTTTCEEEEEEEEEHH----------HHHHHHHHHHT-T
T ss_pred             cCCEEEEEEecCCCCccHHHHHHHHHHHcCCCEEEEEcCCCCCCCCceEEEEEEccc----------cHHHHHHHHHH-H
Confidence            3467788884 6999999999999999999999855444331  2 22112655432          12333344433 2


Q ss_pred             ccCCCCchhhhhccccccCCCCCcccCCccccEEEEecCCCCeEEEEEEec---CcchHHHHHHHHHHhCCccEEEEE
Q 028501           87 LKYHPESSEQLAMGEAFGIKAPEKKLDVDIATHIHVKEDGPKRSLLYIETA---DRPGLLVEIMKIIADVNVDVESAE  161 (208)
Q Consensus        87 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~V~~~~~~~~~~~i~v~~~---Dr~GlL~~i~~~l~~~~i~I~~a~  161 (208)
                      ..   +.          +         +   ..|.+..   +...|.|.|.   ++||+++.+.++|++.|+||....
T Consensus        81 ~~---~~----------~---------~---~~v~~~~---~~a~VsvVG~gm~~~~Gv~arif~aLa~~~InI~~is  130 (178)
T 2dtj_A           81 QV---QG----------N---------W---TNVLYDD---QVGKVSLVGAGMKSHPGVTAEFMEALRDVNVNIELIS  130 (178)
T ss_dssp             TT---TT----------T---------C---SEEEEES---CEEEEEEEEECCTTCHHHHHHHHHHHHHTTCCCCEEE
T ss_pred             HH---hc----------C---------C---CeEEEeC---CeEEEEEEcCCcccCccHHHHHHHHHHHCCCCEEEEE
Confidence            11   00          0         0   1233332   3477888887   899999999999999999998864

>3nrb_A Formyltetrahydrofolate deformylase; N-terminal ACT domain, structural genomics, joint center for structural genomics, JCSG; HET: MSE FLC; 2.05A {Pseudomonas putida}

Probab=97.70  E-value=0.00017  Score=60.33  Aligned_cols=39  Identities=13%  Similarity=0.236  Sum_probs=35.5

Q ss_pred             CCeEEEEEEeCCcccHHHHHHHHHHHCCceEEEEEEEec
Q 028501           12 SDATIVQLSFGDRLGALIDTMNALKDLGLDVAKGTVNTE   50 (208)
Q Consensus        12 ~~~~~v~v~~~DrpGLl~~i~~~L~~~gl~I~~a~i~t~   50 (208)
                      .....|++.|+||||+++.|++.|+++|+||.+.+.++.
T Consensus         5 ~~~~vLtv~c~Dr~GIVa~Vs~~La~~g~NI~d~~q~~d   43 (287)
T 3nrb_A            5 NNQYVLSLACQDAPGIVSEVSTFLFNNGANIVEAEQFND   43 (287)
T ss_dssp             TTEEEEEEEEECCTTHHHHHHHHHHHTTCEEEEEEEEEE
T ss_pred             CCeEEEEEECCCCCCHHHHHHHHHHHCCCCEEeeeeeec
Confidence            345789999999999999999999999999999999854

>3nrb_A Formyltetrahydrofolate deformylase; N-terminal ACT domain, structural genomics, joint center for structural genomics, JCSG; HET: MSE FLC; 2.05A {Pseudomonas putida}

Probab=97.70  E-value=0.00022  Score=59.60  Aligned_cols=37  Identities=19%  Similarity=0.356  Sum_probs=34.5

Q ss_pred             CeEEEEEEecCcchHHHHHHHHHHhCCccEEEEEEEe
Q 028501          128 KRSLLYIETADRPGLLVEIMKIIADVNVDVESAEIDT  164 (208)
Q Consensus       128 ~~~~i~v~~~Dr~GlL~~i~~~l~~~~i~I~~a~i~t  164 (208)
                      ..+++++.|+||||+++.||.+|+++|+||......+
T Consensus         6 ~~~vLtv~c~Dr~GIVa~Vs~~La~~g~NI~d~~q~~   42 (287)
T 3nrb_A            6 NQYVLSLACQDAPGIVSEVSTFLFNNGANIVEAEQFN   42 (287)
T ss_dssp             TEEEEEEEEECCTTHHHHHHHHHHHTTCEEEEEEEEE
T ss_pred             CeEEEEEECCCCCCHHHHHHHHHHHCCCCEEeeeeee
Confidence            4589999999999999999999999999999999864

>3lou_A Formyltetrahydrofolate deformylase; structural genomics, JOI for structural genomics, JCSG, protein structure initiative hydrolase; HET: MSE; 1.90A {Burkholderia mallei}

Probab=97.69  E-value=0.00017  Score=60.42  Aligned_cols=38  Identities=18%  Similarity=0.140  Sum_probs=35.1

Q ss_pred             CeEEEEEEeCCcccHHHHHHHHHHHCCceEEEEEEEec
Q 028501           13 DATIVQLSFGDRLGALIDTMNALKDLGLDVAKGTVNTE   50 (208)
Q Consensus        13 ~~~~v~v~~~DrpGLl~~i~~~L~~~gl~I~~a~i~t~   50 (208)
                      ....|++.|+||||+++.|++.|+++|+||.+.+.++.
T Consensus         9 ~~~vLtv~c~Dr~GIVa~Vs~~La~~g~NI~d~~q~~d   46 (292)
T 3lou_A            9 HQFVLTLSCPSAAGQVAAVVGLLDRHRCYVDELTVFDD   46 (292)
T ss_dssp             CEEEEEEEEESCSCHHHHHHHHHHHTTEEEEEEEEEEE
T ss_pred             CcEEEEEEcCCCCCHHHHHHHHHHHCCCCEEeeEEEec
Confidence            45789999999999999999999999999999999863

>3obi_A Formyltetrahydrofolate deformylase; structural genomics, joint center for structural genomics, J protein structure initiative; HET: MSE; 1.95A {Rhodopseudomonas palustris}

Probab=97.65  E-value=0.00048  Score=57.54  Aligned_cols=36  Identities=14%  Similarity=0.296  Sum_probs=33.8

Q ss_pred             eEEEEEEecCcchHHHHHHHHHHhCCccEEEEEEEe
Q 028501          129 RSLLYIETADRPGLLVEIMKIIADVNVDVESAEIDT  164 (208)
Q Consensus       129 ~~~i~v~~~Dr~GlL~~i~~~l~~~~i~I~~a~i~t  164 (208)
                      .+++++.|+||||+++.||.+|+++|+||..++..+
T Consensus         6 ~~iLtv~g~DrpGIVa~Vs~~La~~g~NI~d~~q~~   41 (288)
T 3obi_A            6 QYVLTLSCPDRAGIVSAVSTFLFENGQNILDAQQYN   41 (288)
T ss_dssp             EEEEEEEEECCTTHHHHHHHHHHHTTEEEEEEEEEE
T ss_pred             eEEEEEECCCCCCHHHHHHHHHHHCCCcEEeeeeee
Confidence            478999999999999999999999999999999864

>3p96_A Phosphoserine phosphatase SERB; ssgcid, structural genomics, structural genomics center for infectious disease, hydrolas; 2.05A {Mycobacterium avium}

Probab=97.64  E-value=0.00012  Score=63.76  Aligned_cols=49  Identities=14%  Similarity=0.195  Sum_probs=43.3

Q ss_pred             CeEEEEEEecCcchHHHHHHHHHHhCCccEEEEEEEecCCeEEEEEEEE
Q 028501          128 KRSLLYIETADRPGLLVEIMKIIADVNVDVESAEIDTEGLVAKDKFHVS  176 (208)
Q Consensus       128 ~~~~i~v~~~Dr~GlL~~i~~~l~~~~i~I~~a~i~t~~~~~~~~f~v~  176 (208)
                      ..++|+|.|+||||+++.|+.+|+++|+||..+.....++.......++
T Consensus        11 ~~~~lt~~g~Dr~Giv~~vs~~l~~~~~nI~d~~q~~~~~~f~~~~~~~   59 (415)
T 3p96_A           11 VSVLITVTGVDQPGVTATLFEVLSRHGVELLNVEQVVIRHRLTLGVLVC   59 (415)
T ss_dssp             EEEEEEEEEECCTTHHHHHHHHHTTTTCEEEEEEEEEETTEEEEEEEEE
T ss_pred             CeEEEEEEcCCCCCHHHHHHHHHHHCCCCEEEeeeEEECCEeEEEEEEE
Confidence            4689999999999999999999999999999999998888766655554

>3n0v_A Formyltetrahydrofolate deformylase; formyl transferase, ACT domain, structural genomics, joint C structural genomics, JCSG; HET: MSE; 2.25A {Pseudomonas putida}

Probab=97.64  E-value=0.00043  Score=57.79  Aligned_cols=37  Identities=8%  Similarity=0.048  Sum_probs=34.5

Q ss_pred             eEEEEEEecCcchHHHHHHHHHHhCCccEEEEEEEec
Q 028501          129 RSLLYIETADRPGLLVEIMKIIADVNVDVESAEIDTE  165 (208)
Q Consensus       129 ~~~i~v~~~Dr~GlL~~i~~~l~~~~i~I~~a~i~t~  165 (208)
                      .+++++.|+||||+++.||.+|+++|+||.+.+..+.
T Consensus         8 ~~vLtv~c~DrpGIVa~Vs~~La~~g~NI~d~~q~~d   44 (286)
T 3n0v_A            8 TWILTADCPSMLGTVDVVTRYLFEQRCYVTEHHSFDD   44 (286)
T ss_dssp             CEEEEEEEECCTTHHHHHHHHHHHTTCEEEEEEEEEE
T ss_pred             cEEEEEEeCCCCCHHHHHHHHHHHCCCCeeeeeeecc
Confidence            4889999999999999999999999999999998853

>2f1f_A Acetolactate synthase isozyme III small subunit; ferredoxin fold, ACT domain, transferase; HET: P33 1PE; 1.75A {Escherichia coli} SCOP: d.58.18.6 d.58.18.6

Probab=97.63  E-value=0.00022  Score=54.78  Aligned_cols=64  Identities=13%  Similarity=0.255  Sum_probs=49.1

Q ss_pred             eEEEEEEecCcchHHHHHHHHHHhCCccEEEEEEEecCC--eEEEEEEEEeCCCCCChHHHHHHHHHHHHH
Q 028501          129 RSLLYIETADRPGLLVEIMKIIADVNVDVESAEIDTEGL--VAKDKFHVSYGGAALNSSLSQVLVNCLRYY  197 (208)
Q Consensus       129 ~~~i~v~~~Dr~GlL~~i~~~l~~~~i~I~~a~i~t~~~--~~~~~f~v~~~g~~~~~~~~~~l~~~l~~~  197 (208)
                      ...++|.+.|+||+|++|+..|++.|+||.++.+.+..+  ...-.|.++  |.   +...++|.+.|...
T Consensus         3 ~~~IsV~v~NrpGvLarIt~lfs~rg~NI~Sl~v~~t~d~~~sriti~V~--~d---~~~leqI~kqL~Kl   68 (164)
T 2f1f_A            3 RRILSVLLENESGALSRVIGLFSQRGYNIESLTVAPTDDPTLSRMTIQTV--GD---EKVLEQIEKQLHKL   68 (164)
T ss_dssp             EEEEEEEEECCTTHHHHHHHHHHTTTCCCSEEEEEECSCSSEEEEEEEEE--SC---HHHHHHHHHHHHHS
T ss_pred             EEEEEEEEeCCCcHHHHHHHHHHHCCCCeeeceeeecCCCCEEEEEEEEe--cc---HHHHHHHHHHHcCC
Confidence            367999999999999999999999999999999976543  344456665  22   44567777777643

>2pc6_A Probable acetolactate synthase isozyme III (small; regulatory subunit, structural genomi protein structure initiative; HET: MSE; 2.50A {Nitrosomonas europaea atcc 19718} SCOP: d.58.18.6 d.58.18.6

Probab=97.58  E-value=0.00041  Score=53.32  Aligned_cols=64  Identities=9%  Similarity=0.197  Sum_probs=49.4

Q ss_pred             eEEEEEEecCcchHHHHHHHHHHhCCccEEEEEEEecC--CeEEEEEEEEeCCCCCChHHHHHHHHHHHHH
Q 028501          129 RSLLYIETADRPGLLVEIMKIIADVNVDVESAEIDTEG--LVAKDKFHVSYGGAALNSSLSQVLVNCLRYY  197 (208)
Q Consensus       129 ~~~i~v~~~Dr~GlL~~i~~~l~~~~i~I~~a~i~t~~--~~~~~~f~v~~~g~~~~~~~~~~l~~~l~~~  197 (208)
                      ...++|...|+||+|++|+..|++.|+||.++.+.+..  +...-.|.++++     +...++|.+.|...
T Consensus         4 ~~~IsV~veNrpGvL~rI~~lfs~rg~NI~Sl~v~~t~d~g~sritivV~~d-----~~~leql~kQL~Kl   69 (165)
T 2pc6_A            4 RHIISLLMENEAGALSRVAGLFSARGYNIESLSVAPTEDPTLSRMTLVTNGP-----DEIVEQITKQLNKL   69 (165)
T ss_dssp             EEEEEEEEECSTTHHHHHHHHHHHHTCCCCEEEEEECSSTTEEEEEEEEEEC-----HHHHHHHHHHHHHS
T ss_pred             EEEEEEEEeCCCcHHHHHHHHHHHCCCcEEEEEEEecCCCCEEEEEEEEecc-----HHHHHHHHHHhcCC
Confidence            46799999999999999999999999999999997654  334455666532     44567777777654

>3s1t_A Aspartokinase; ACT domain, threonine binding, regulatory domain of aspartok transferase; 1.63A {Mycobacterium tuberculosis}

Probab=97.42  E-value=0.0048  Score=47.84  Aligned_cols=111  Identities=15%  Similarity=0.176  Sum_probs=70.7

Q ss_pred             CCeEEEEEE-eCCcccHHHHHHHHHHHCCceEEEEEEEecC--Ce-eEEEEEEeeCCCCCCCCCHHHHHHHHHHHHHhhc
Q 028501           12 SDATIVQLS-FGDRLGALIDTMNALKDLGLDVAKGTVNTEG--SV-KQTKFFITRLDTGRKVEDPDLLERIRLTIINNLL   87 (208)
Q Consensus        12 ~~~~~v~v~-~~DrpGLl~~i~~~L~~~gl~I~~a~i~t~~--~~-~~d~F~v~~~~~g~~~~~~~~~~~l~~~L~~~l~   87 (208)
                      ++.+.|+|. .+|+||.+++|.+.|++.|++|.--......  .+ .--+|.|...+          .++..+.|++ +.
T Consensus        14 ~~~~~Iti~~~~~~~G~~a~If~~La~~~I~vd~I~q~~s~~~~g~~~isftv~~~~----------~~~a~~~L~~-~~   82 (181)
T 3s1t_A           14 RSEAKVTIVGLPDIPGYAAKVFRAVADADVNIDMVLQNVSKVEDGKTDITFTCSRDV----------GPAAVEKLDS-LR   82 (181)
T ss_dssp             CSEEEEEEEEEESSTTHHHHHHHHHHHTTCCCCCEEECCCCTTTCEEEEEEEEETTT----------HHHHHHHHHH-TH
T ss_pred             CCEEEEEEecCCCCcCHHHHHHHHHHHcCCcEEEEEecCCcccCCccEEEEEEehhH----------HHHHHHHHHH-HH
Confidence            456677775 5899999999999999999999843322222  22 23346665331          1223333333 11


Q ss_pred             cCCCCchhhhhccccccCCCCCcccCCccccEEEEecCCCCeEEEEEEec---CcchHHHHHHHHHHhCCccEEEEE
Q 028501           88 KYHPESSEQLAMGEAFGIKAPEKKLDVDIATHIHVKEDGPKRSLLYIETA---DRPGLLVEIMKIIADVNVDVESAE  161 (208)
Q Consensus        88 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~V~~~~~~~~~~~i~v~~~---Dr~GlL~~i~~~l~~~~i~I~~a~  161 (208)
                      .       .+      .            ..+|.++.   +...+.+.|.   ++||+.+.+.++|++.|+||..+.
T Consensus        83 ~-------el------~------------~~~v~~~~---~va~VsvVG~gm~~~~Gvaa~~f~aLa~~~InI~~Is  131 (181)
T 3s1t_A           83 N-------EI------G------------FSQLLYDD---HIGKVSLIGAGMRSHPGVTATFCEALAAVGVNIELIS  131 (181)
T ss_dssp             H-------HH------C------------CSEEEEES---CEEEEEEEEECCTTCHHHHHHHHHHHHHTTCCCCEEE
T ss_pred             H-------hc------C------------cceEEEeC---CEEEEEEEecccccCchHHHHHHHHHHHCCCcEEEEE
Confidence            1       00      0            01133333   3467777766   899999999999999999998887

>2f1f_A Acetolactate synthase isozyme III small subunit; ferredoxin fold, ACT domain, transferase; HET: P33 1PE; 1.75A {Escherichia coli} SCOP: d.58.18.6 d.58.18.6

Probab=97.25  E-value=0.001  Score=51.07  Aligned_cols=62  Identities=16%  Similarity=0.234  Sum_probs=48.6

Q ss_pred             EEEEEEeCCcccHHHHHHHHHHHCCceEEEEEEEecCC-e-eEEEEEEeeCCCCCCCCCHHHHHHHHHHHHH
Q 028501           15 TIVQLSFGDRLGALIDTMNALKDLGLDVAKGTVNTEGS-V-KQTKFFITRLDTGRKVEDPDLLERIRLTIIN   84 (208)
Q Consensus        15 ~~v~v~~~DrpGLl~~i~~~L~~~gl~I~~a~i~t~~~-~-~~d~F~v~~~~~g~~~~~~~~~~~l~~~L~~   84 (208)
                      ..|.|.+.|+||+|++++++|++.|+||.+..+....+ + ..-+|.+. .   .    ...++++.+.|.+
T Consensus         4 ~~IsV~v~NrpGvLarIt~lfs~rg~NI~Sl~v~~t~d~~~sriti~V~-~---d----~~~leqI~kqL~K   67 (164)
T 2f1f_A            4 RILSVLLENESGALSRVIGLFSQRGYNIESLTVAPTDDPTLSRMTIQTV-G---D----EKVLEQIEKQLHK   67 (164)
T ss_dssp             EEEEEEEECCTTHHHHHHHHHHTTTCCCSEEEEEECSCSSEEEEEEEEE-S---C----HHHHHHHHHHHHH
T ss_pred             EEEEEEEeCCCcHHHHHHHHHHHCCCCeeeceeeecCCCCEEEEEEEEe-c---c----HHHHHHHHHHHcC
Confidence            57899999999999999999999999999999987664 3 33345554 2   2    3567888888776

>2pc6_A Probable acetolactate synthase isozyme III (small; regulatory subunit, structural genomi protein structure initiative; HET: MSE; 2.50A {Nitrosomonas europaea atcc 19718} SCOP: d.58.18.6 d.58.18.6

Probab=97.17  E-value=0.0014  Score=50.32  Aligned_cols=62  Identities=15%  Similarity=0.238  Sum_probs=48.1

Q ss_pred             EEEEEEeCCcccHHHHHHHHHHHCCceEEEEEEEecCC-e-eEEEEEEeeCCCCCCCCCHHHHHHHHHHHHH
Q 028501           15 TIVQLSFGDRLGALIDTMNALKDLGLDVAKGTVNTEGS-V-KQTKFFITRLDTGRKVEDPDLLERIRLTIIN   84 (208)
Q Consensus        15 ~~v~v~~~DrpGLl~~i~~~L~~~gl~I~~a~i~t~~~-~-~~d~F~v~~~~~g~~~~~~~~~~~l~~~L~~   84 (208)
                      ..+.|...|+||.|++++++|++.|+||.+..+..+.+ + ..-+|.+. .   .    +..++++.+.|.+
T Consensus         5 ~~IsV~veNrpGvL~rI~~lfs~rg~NI~Sl~v~~t~d~g~sritivV~-~---d----~~~leql~kQL~K   68 (165)
T 2pc6_A            5 HIISLLMENEAGALSRVAGLFSARGYNIESLSVAPTEDPTLSRMTLVTN-G---P----DEIVEQITKQLNK   68 (165)
T ss_dssp             EEEEEEEECSTTHHHHHHHHHHHHTCCCCEEEEEECSSTTEEEEEEEEE-E---C----HHHHHHHHHHHHH
T ss_pred             EEEEEEEeCCCcHHHHHHHHHHHCCCcEEEEEEEecCCCCEEEEEEEEe-c---c----HHHHHHHHHHhcC
Confidence            47889999999999999999999999999999986654 3 33345554 2   1    3566777777776

>2jhe_A Transcription regulator TYRR; aromatic hydrocarbons catabolism, TYRR protei nucleotide-binding, transcription regulation, activator; HET: PG4; 2.30A {Escherichia coli}

Probab=97.14  E-value=0.0023  Score=48.48  Aligned_cols=35  Identities=29%  Similarity=0.395  Sum_probs=32.9

Q ss_pred             EEEEEecCcchHHHHHHHHHHhCCccEEEEEEEec
Q 028501          131 LLYIETADRPGLLVEIMKIIADVNVDVESAEIDTE  165 (208)
Q Consensus       131 ~i~v~~~Dr~GlL~~i~~~l~~~~i~I~~a~i~t~  165 (208)
                      .|+|.|.||+|+|++|+++|+++++||..+.+.+.
T Consensus         2 ~~~v~~~dr~g~l~~i~~~l~~~~~ni~~~~~~~~   36 (190)
T 2jhe_A            2 RLEVFCEDRLGLTRELLDLLVLRGIDLRGIEIDPI   36 (190)
T ss_dssp             EEEEEECSCTTHHHHHHHHHHHTTCCEEEEEEETT
T ss_pred             EEEEEEecCCcHHHHHHHHHHHcCCCeEEEEEecC
Confidence            48899999999999999999999999999999765

>2fgc_A Acetolactate synthase, small subunit; regulatory subunit, structural genomi protein structure initiative; 2.30A {Thermotoga maritima} SCOP: d.58.18.6 d.58.18.6

Probab=97.14  E-value=0.0013  Score=51.54  Aligned_cols=63  Identities=10%  Similarity=0.174  Sum_probs=47.7

Q ss_pred             eEEEEEEecCcchHHHHHHHHHHhCCccEEEEEEEecCC--eEEEEEEEEeCCCCCChHHHHHHHHHHHH
Q 028501          129 RSLLYIETADRPGLLVEIMKIIADVNVDVESAEIDTEGL--VAKDKFHVSYGGAALNSSLSQVLVNCLRY  196 (208)
Q Consensus       129 ~~~i~v~~~Dr~GlL~~i~~~l~~~~i~I~~a~i~t~~~--~~~~~f~v~~~g~~~~~~~~~~l~~~l~~  196 (208)
                      ...|+|...|+||.|++|+..|+..|+||.++.+....+  ...-++.+++.     +...++|.+.|..
T Consensus        29 ~~~LsVlVeN~pGvLaRItglfsrRG~NI~SLtV~~ted~gisRitIvV~g~-----e~~ieqL~kQL~K   93 (193)
T 2fgc_A           29 EHLVSMLVHNKPGVMRKVANLFARRGFNISSITVGESETPGLSRLVIMVKGD-----DKTIEQIEKQAYK   93 (193)
T ss_dssp             EEEEEEEEECCTTHHHHHHHHHHTTTCEEEEEEEEECSSTTEEEEEEEEEEC-----TTHHHHHHHHHTT
T ss_pred             EEEEEEEECCCChHHHHHHHHHHHCCceEEEEEeeccCCCCEEEEEEEEECC-----HHHHHHHHHHhcC
Confidence            578999999999999999999999999999999875443  23345566433     3345677766664

>1y7p_A Hypothetical protein AF1403; structural genomics, protein structure initiative, PSI, alpha-beta-alpha sandwich; HET: RIP; 1.90A {Archaeoglobus fulgidus} SCOP: c.23.1.7 d.58.18.12

Probab=97.14  E-value=0.001  Score=53.17  Aligned_cols=38  Identities=21%  Similarity=0.174  Sum_probs=31.3

Q ss_pred             eEEEEEEecCcchHHHHHHHHHHhCCccEEEEEEEecC
Q 028501          129 RSLLYIETADRPGLLVEIMKIIADVNVDVESAEIDTEG  166 (208)
Q Consensus       129 ~~~i~v~~~Dr~GlL~~i~~~l~~~~i~I~~a~i~t~~  166 (208)
                      ...|.+.+.||||+|++|+++|+++++||.+++..+..
T Consensus         4 ~VtL~I~a~DRpGLLsDIt~vLAe~kiNIltIn~~~~~   41 (223)
T 1y7p_A            4 LRGLRIIAENKIGVLRDLTTIIAEEGGNITFAQTFLIK   41 (223)
T ss_dssp             CEEEEEEEECCTTHHHHHHHHCC----CEEEEEEEECC
T ss_pred             eEEEEEEEcCCCCHHHHHHHHHHHcCCCceEEEEEccc
Confidence            47899999999999999999999999999999998854

>4go7_X Aspartokinase; transferase; 2.00A {Mycobacterium tuberculosis} PDB: 4go5_X

Probab=97.10  E-value=0.0048  Score=48.76  Aligned_cols=112  Identities=14%  Similarity=0.149  Sum_probs=69.1

Q ss_pred             CCCeEEEEEE-eCCcccHHHHHHHHHHHCCceEEEEEEEec--CCee-EEEEEEeeCCCCCCCCCHHHHHHHHHHHHHhh
Q 028501           11 NSDATIVQLS-FGDRLGALIDTMNALKDLGLDVAKGTVNTE--GSVK-QTKFFITRLDTGRKVEDPDLLERIRLTIINNL   86 (208)
Q Consensus        11 ~~~~~~v~v~-~~DrpGLl~~i~~~L~~~gl~I~~a~i~t~--~~~~-~d~F~v~~~~~g~~~~~~~~~~~l~~~L~~~l   86 (208)
                      .++...|+|. .+|+||+.++|.+.|++.|+||.--.....  .+.. .-+|.+...+          .++....|.+..
T Consensus        32 ~~~~a~Iti~g~~~~pG~aa~IF~~La~~~InVDmI~Qs~s~~~~~~~~~sftv~~~d----------~~~~~~~l~~~~  101 (200)
T 4go7_X           32 DRSEAKVTIVGLPDIPGYAAKVFRAVADADVNIDMVLQNVSKVEDGKTDITFTCSRDV----------GPAAVEKLDSLR  101 (200)
T ss_dssp             ECSEEEEEEEEEECSTTHHHHHHHHHHHTTCCCCCEECCCCC--CCEEEEEEEEEGGG----------HHHHHHHHHTTH
T ss_pred             cCCEEEEEEecCCCCccHHHHHHHHHHHhCcceEEEeeccccccccceEEEEecchhh----------HHHHHHHHHHHH
Confidence            3466788887 499999999999999999999984322221  1223 3346664321          122222332211


Q ss_pred             ccCCCCchhhhhccccccCCCCCcccCCccccEEEEecCCCCeEEEEEEe---cCcchHHHHHHHHHHhCCccEEEEE
Q 028501           87 LKYHPESSEQLAMGEAFGIKAPEKKLDVDIATHIHVKEDGPKRSLLYIET---ADRPGLLVEIMKIIADVNVDVESAE  161 (208)
Q Consensus        87 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~V~~~~~~~~~~~i~v~~---~Dr~GlL~~i~~~l~~~~i~I~~a~  161 (208)
                      .        .+      .            ..+|.++.+   ...+.+.|   ..+||+.+.+.++|++.|+||.-..
T Consensus       102 ~--------~~------~------------~~~v~~~~~---iakVSvVG~GM~~~~GVaak~F~aLa~~~INI~mIs  150 (200)
T 4go7_X          102 N--------EI------G------------FSQLLYDDH---IGKVSLIGAGMRSHPGVTATFCEALAAVGVNIELIS  150 (200)
T ss_dssp             H--------HH------C------------CSEEEEECC---EEEEEEEEESCTTCHHHHHHHHHHHHHTTCCCCEEE
T ss_pred             h--------hh------c------------eeeEEEecC---eeeeeeeccccccCCCcHHHHHHHHHHCCCCEEEEE
Confidence            0        00      0            011333333   24455544   5899999999999999999998886

>3ab4_A Aspartokinase; aspartate kinase, concerted inhibition, alternative initiati amino-acid biosynthesis, ATP-binding; HET: LYS; 2.47A {Corynebacterium glutamicum} PDB: 3aaw_A* 3ab2_A

Probab=96.94  E-value=0.023  Score=49.59  Aligned_cols=110  Identities=21%  Similarity=0.272  Sum_probs=71.6

Q ss_pred             CeEEEEEE-eCCcccHHHHHHHHHHHCCceEEEEEEEecC--Ce-eEEEEEEeeCCCCCCCCCHHHHHHHHHHHHHhhcc
Q 028501           13 DATIVQLS-FGDRLGALIDTMNALKDLGLDVAKGTVNTEG--SV-KQTKFFITRLDTGRKVEDPDLLERIRLTIINNLLK   88 (208)
Q Consensus        13 ~~~~v~v~-~~DrpGLl~~i~~~L~~~gl~I~~a~i~t~~--~~-~~d~F~v~~~~~g~~~~~~~~~~~l~~~L~~~l~~   88 (208)
                      +.+.|+|. .+|+||.++++.+.|+++|++|.--...+..  .+ ..-.|.|...+       .   ++..+.|++ +..
T Consensus       263 ~~~~i~v~~~~~~~g~~~~If~~La~~~I~vd~I~q~~s~~~~g~~~isf~v~~~~-------~---~~a~~~l~~-~~~  331 (421)
T 3ab4_A          263 SEAKVTVLGISDKPGEAAKVFRALADAEINIDMVLQNVFSVEDGTTDITFTCPRSD-------G---RRAMEILKK-LQV  331 (421)
T ss_dssp             SEEEEEEEEEESSTTHHHHHHHHHHHTTCCCEEEEECCCC--CCEEEEEEEEETTT-------H---HHHHHHHHH-HHT
T ss_pred             CEEEEEEeccCCcccHHHHHHHHHHHcCCcEEEEEccCccccCCcceEEEEEechh-------H---HHHHHHHHH-HHH
Confidence            55678888 5899999999999999999999855443332  22 23346665321       1   222334444 211


Q ss_pred             CCCCchhhhhccccccCCCCCcccCCccccEEEEecCCCCeEEEEEEec---CcchHHHHHHHHHHhCCccEEEEE
Q 028501           89 YHPESSEQLAMGEAFGIKAPEKKLDVDIATHIHVKEDGPKRSLLYIETA---DRPGLLVEIMKIIADVNVDVESAE  161 (208)
Q Consensus        89 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~V~~~~~~~~~~~i~v~~~---Dr~GlL~~i~~~l~~~~i~I~~a~  161 (208)
                         +.          +         +   ..|.+..   +...+.|.|.   ++||+++.+..+|++.|+||....
T Consensus       332 ---~~----------~---------~---~~v~~~~---~~a~vsvVG~gm~~~~Gv~a~~f~aL~~~~InI~~is  379 (421)
T 3ab4_A          332 ---QG----------N---------W---TNVLYDD---QVGKVSLVGAGMKSHPGVTAEFMEALRDVNVNIELIS  379 (421)
T ss_dssp             ---TT----------T---------C---SEEEEEC---CEEEEEEECGGGTSCTTHHHHHHHHHHHTTCCCCEEE
T ss_pred             ---Hc----------C---------C---ceEEEeC---CeEEEEEEccCcccCccHHHHHHHHHHHCCCCEEEEE
Confidence               00          0         0   1233332   3467888886   799999999999999999998554

>2fgc_A Acetolactate synthase, small subunit; regulatory subunit, structural genomi protein structure initiative; 2.30A {Thermotoga maritima} SCOP: d.58.18.6 d.58.18.6

Probab=96.77  E-value=0.0077  Score=47.22  Aligned_cols=63  Identities=14%  Similarity=0.222  Sum_probs=46.0

Q ss_pred             eEEEEEEeCCcccHHHHHHHHHHHCCceEEEEEEEecCC-ee-EEEEEEeeCCCCCCCCCHHHHHHHHHHHHH
Q 028501           14 ATIVQLSFGDRLGALIDTMNALKDLGLDVAKGTVNTEGS-VK-QTKFFITRLDTGRKVEDPDLLERIRLTIIN   84 (208)
Q Consensus        14 ~~~v~v~~~DrpGLl~~i~~~L~~~gl~I~~a~i~t~~~-~~-~d~F~v~~~~~g~~~~~~~~~~~l~~~L~~   84 (208)
                      ...|+|...|+||.|++|+++|+..|+||.+-.+..+.+ +. .-++.|...+        ..+++|.+.|.+
T Consensus        29 ~~~LsVlVeN~pGvLaRItglfsrRG~NI~SLtV~~ted~gisRitIvV~g~e--------~~ieqL~kQL~K   93 (193)
T 2fgc_A           29 EHLVSMLVHNKPGVMRKVANLFARRGFNISSITVGESETPGLSRLVIMVKGDD--------KTIEQIEKQAYK   93 (193)
T ss_dssp             EEEEEEEEECCTTHHHHHHHHHHTTTCEEEEEEEEECSSTTEEEEEEEEEECT--------THHHHHHHHHTT
T ss_pred             EEEEEEEECCCChHHHHHHHHHHHCCceEEEEEeeccCCCCEEEEEEEEECCH--------HHHHHHHHHhcC
Confidence            357999999999999999999999999999888875544 33 2344554221        345666666655

>2jhe_A Transcription regulator TYRR; aromatic hydrocarbons catabolism, TYRR protei nucleotide-binding, transcription regulation, activator; HET: PG4; 2.30A {Escherichia coli}

Probab=96.64  E-value=0.012  Score=44.48  Aligned_cols=59  Identities=14%  Similarity=0.198  Sum_probs=43.5

Q ss_pred             EEEEEeCCcccHHHHHHHHHHHCCceEEEEEEEecCCeeEEEEEEeeCCCCCCCCCHHHHHHHHHHHHH
Q 028501           16 IVQLSFGDRLGALIDTMNALKDLGLDVAKGTVNTEGSVKQTKFFITRLDTGRKVEDPDLLERIRLTIIN   84 (208)
Q Consensus        16 ~v~v~~~DrpGLl~~i~~~L~~~gl~I~~a~i~t~~~~~~d~F~v~~~~~g~~~~~~~~~~~l~~~L~~   84 (208)
                      .|.|.|.||+|++++|+.+|+..++||....+.+.  +.   +++.-+.     .+.+.+..+...+..
T Consensus         2 ~~~v~~~dr~g~l~~i~~~l~~~~~ni~~~~~~~~--g~---i~~~~~~-----~~~~~~~~L~~~l~~   60 (190)
T 2jhe_A            2 RLEVFCEDRLGLTRELLDLLVLRGIDLRGIEIDPI--GR---IYLNFAE-----LEFESFSSLMAEIRR   60 (190)
T ss_dssp             EEEEEECSCTTHHHHHHHHHHHTTCCEEEEEEETT--TE---EEEEECC-----CCHHHHHHHHHHHHH
T ss_pred             EEEEEEecCCcHHHHHHHHHHHcCCCeEEEEEecC--CE---EEEEEEe-----CCHHHHHHHHHHHHc
Confidence            57899999999999999999999999999998666  22   3333321     123556666666665

>2qmx_A Prephenate dehydratase; APC86053, L-Phe inhibition, PDT, CHL tepidum TLS, structural genomics, PSI-2, protein structure initiative; HET: PHE; 2.30A {Chlorobium tepidum tls}

Probab=96.43  E-value=0.011  Score=49.21  Aligned_cols=58  Identities=14%  Similarity=0.160  Sum_probs=47.0

Q ss_pred             eEEEEEEecCcchHHHHHHHHHHhCCccEEEEEEEecCCeEE-EEEEEEeCCCCCChHH
Q 028501          129 RSLLYIETADRPGLLVEIMKIIADVNVDVESAEIDTEGLVAK-DKFHVSYGGAALNSSL  186 (208)
Q Consensus       129 ~~~i~v~~~Dr~GlL~~i~~~l~~~~i~I~~a~i~t~~~~~~-~~f~v~~~g~~~~~~~  186 (208)
                      .+.|-+..+|+||-|+++...|+.+|+|+.++..-..+++.+ -.|+|+-+|+.-++..
T Consensus       200 ktsl~f~~~~~pGaL~~~L~~Fa~~gINLtkIESRP~~~~~~~Y~FfvD~eg~~~d~~v  258 (283)
T 2qmx_A          200 KTSIVFALPNEQGSLFRALATFALRGIDLTKIESRPSRKKAFEYLFYADFIGHREDQNV  258 (283)
T ss_dssp             EEEEEEEEECCTTHHHHHHHHHHTTTCCEEEEEEEECSSSTTEEEEEEEEESCTTSHHH
T ss_pred             eEEEEEEcCCCCchHHHHHHHHHHcCCCeeEEEeeEcCCCCcceEEEEEEecCCCcHHH
Confidence            466777778999999999999999999999999998877644 4788876887633333

>3luy_A Probable chorismate mutase; structural genomics, APC38059, 3-phenylp PSI-2, protein structure initiative; HET: PPY; 2.00A {Bifidobacterium adolescentis}

Probab=96.36  E-value=0.038  Score=46.86  Aligned_cols=61  Identities=15%  Similarity=0.226  Sum_probs=46.6

Q ss_pred             EEEEEEec--CcchHHHHHHHHHHhCCccEEEEEEEecCCeEEE-EEEEEeCCCCCChHHHHHH
Q 028501          130 SLLYIETA--DRPGLLVEIMKIIADVNVDVESAEIDTEGLVAKD-KFHVSYGGAALNSSLSQVL  190 (208)
Q Consensus       130 ~~i~v~~~--Dr~GlL~~i~~~l~~~~i~I~~a~i~t~~~~~~~-~f~v~~~g~~~~~~~~~~l  190 (208)
                      +.+-+...  |+||-|+++...|+.+|||+.++..-...++... .|+|+-+|+.-+...++.|
T Consensus       207 ts~i~~~~~~~~pGaL~~~L~~Fa~~gINLtkIESRP~~~~~~~Y~FfiD~eg~~~d~~v~~AL  270 (329)
T 3luy_A          207 ESVLTLIPLVTGPGVLANLLDVFRDAGLNMTSFISRPIKGRTGTYSFIVTLDAAPWEERFRDAL  270 (329)
T ss_dssp             EEEEEEECSCCSTTHHHHHHHHHHHTTCCEEEEEEEEETTEEEEEEEEEEESSCTTSHHHHHHH
T ss_pred             eEEEEEecCCCCCCHHHHHHHHHHHCCcceEEEEeeECCCCCccEEEEEEEeCCcCCHHHHHHH
Confidence            44444443  7999999999999999999999999998888666 6888768877444444444

>2f06_A Conserved hypothetical protein; structural genomics hypothetical protein, PSI, protein struc initiative; HET: MSE HIS; 2.10A {Bacteroides thetaiotaomicron} SCOP: d.58.18.11 d.58.18.11

Probab=96.23  E-value=0.016  Score=42.69  Aligned_cols=39  Identities=21%  Similarity=0.307  Sum_probs=33.7

Q ss_pred             eEEEEEEecCcchHHHHHHHHHHhCCccEEEEEEEecCC
Q 028501          129 RSLLYIETADRPGLLVEIMKIIADVNVDVESAEIDTEGL  167 (208)
Q Consensus       129 ~~~i~v~~~Dr~GlL~~i~~~l~~~~i~I~~a~i~t~~~  167 (208)
                      ...++|..+|+||.|++|+..|++.|+||....+....+
T Consensus         6 ~~~i~v~v~d~~G~l~~i~~~la~~~inI~~i~~~~~~~   44 (144)
T 2f06_A            6 AKQLSIFLENKSGRLTEVTEVLAKENINLSALCIAENAD   44 (144)
T ss_dssp             EEEEEEEECSSSSHHHHHHHHHHHTTCCEEEEEEEECSS
T ss_pred             EEEEEEEecCCCcHHHHHHHHHHHCCCCEEEEEEEecCC
Confidence            367888999999999999999999999999998764333

>1y7p_A Hypothetical protein AF1403; structural genomics, protein structure initiative, PSI, alpha-beta-alpha sandwich; HET: RIP; 1.90A {Archaeoglobus fulgidus} SCOP: c.23.1.7 d.58.18.12

Probab=96.20  E-value=0.011  Score=47.24  Aligned_cols=38  Identities=11%  Similarity=0.118  Sum_probs=31.3

Q ss_pred             eEEEEEEeCCcccHHHHHHHHHHHCCceEEEEEEEecC
Q 028501           14 ATIVQLSFGDRLGALIDTMNALKDLGLDVAKGTVNTEG   51 (208)
Q Consensus        14 ~~~v~v~~~DrpGLl~~i~~~L~~~gl~I~~a~i~t~~   51 (208)
                      ...|.|.+.||||+|++|+++|++++.||...+..+..
T Consensus         4 ~VtL~I~a~DRpGLLsDIt~vLAe~kiNIltIn~~~~~   41 (223)
T 1y7p_A            4 LRGLRIIAENKIGVLRDLTTIIAEEGGNITFAQTFLIK   41 (223)
T ss_dssp             CEEEEEEEECCTTHHHHHHHHCC----CEEEEEEEECC
T ss_pred             eEEEEEEEcCCCCHHHHHHHHHHHcCCCceEEEEEccc
Confidence            35789999999999999999999999999999999876

>3mwb_A Prephenate dehydratase; L-Phe, PSI, MCSG, structural genomics, midwest center for ST genomics, protein structure initiative, lyase; HET: MSE PHE; 2.00A {Arthrobacter aurescens}

Probab=96.02  E-value=0.017  Score=48.68  Aligned_cols=63  Identities=24%  Similarity=0.381  Sum_probs=48.9

Q ss_pred             CeEEEEEEec-CcchHHHHHHHHHHhCCccEEEEEEEecCCeEE-EEEEEEeCCCCCChHHHHHH
Q 028501          128 KRSLLYIETA-DRPGLLVEIMKIIADVNVDVESAEIDTEGLVAK-DKFHVSYGGAALNSSLSQVL  190 (208)
Q Consensus       128 ~~~~i~v~~~-Dr~GlL~~i~~~l~~~~i~I~~a~i~t~~~~~~-~~f~v~~~g~~~~~~~~~~l  190 (208)
                      ..+.|-+..+ |+||-|+++...|+.+|||+.++..-...+... =.|+|+-+|+.-++..++.|
T Consensus       200 ~kTSl~f~~~~~~pGaL~~~L~~Fa~~gINLtkIESRP~~~~~~~Y~FfiD~eg~~~d~~v~~aL  264 (313)
T 3mwb_A          200 DKTTVVVPLPEDHPGALMEILDQFASRGVNLSRIESRPTGQYLGHYFFSIDADGHATDSRVADAL  264 (313)
T ss_dssp             EEEEEEEECSSCCTTHHHHHHHHHHTTTCCEEEEEEEECSSSTTSEEEEEEEESCTTSHHHHHHH
T ss_pred             CeEEEEEEeCCCCCCHHHHHHHHHHHCCccEEEEEEeecCCCCccEEEEEEEeCCCCcHHHHHHH
Confidence            3677777775 999999999999999999999999988776644 46888767876333343333

>1sc6_A PGDH, D-3-phosphoglycerate dehydrogenase; allosteric regulation phosphoglycerate dehydrogenase PGDH, oxidoreductase; HET: NAD; 2.09A {Escherichia coli} SCOP: c.2.1.4 c.23.12.1 d.58.18.1 PDB: 1psd_A* 1yba_A* 2p9c_A* 2p9e_A* 2pa3_A* 2p9g_A*

Probab=95.97  E-value=0.022  Score=49.68  Aligned_cols=50  Identities=20%  Similarity=0.294  Sum_probs=43.4

Q ss_pred             CeEEEEEEecCcchHHHHHHHHHHhCCccEEEEEEEecCCeEEEEEEEEe
Q 028501          128 KRSLLYIETADRPGLLVEIMKIIADVNVDVESAEIDTEGLVAKDKFHVSY  177 (208)
Q Consensus       128 ~~~~i~v~~~Dr~GlL~~i~~~l~~~~i~I~~a~i~t~~~~~~~~f~v~~  177 (208)
                      +...+-+.-.|+||++..|+.+|+++|+||......+.|+.+..++.++.
T Consensus       330 ~~~rl~~~h~d~PGvi~~i~~iL~~~~iNIa~m~~~r~g~~A~~vidvD~  379 (404)
T 1sc6_A          330 GGRRLMHIHENRPGVLTALNKIFAEQGVNIAAQYLQTSAQMGYVVIDIEA  379 (404)
T ss_dssp             SSEEEEEEEESCTTHHHHHHHHHHHTTCEEEEEEEEECSSEEEEEEEEEC
T ss_pred             CcceEEEEeCCCCCHHHHHHHHHHHcCCCHHHhhccCCCCEEEEEEEcCC
Confidence            34567788999999999999999999999999999997777777777754

>2qmw_A PDT, prephenate dehydratase; APC85812, prephenate dehydratase (PDT), staphylococcus aureu aureus MU50, structural genomics, PSI-2; 2.30A {Staphylococcus aureus subsp} SCOP: c.94.1.1 d.58.18.3

Probab=95.56  E-value=0.036  Score=45.59  Aligned_cols=52  Identities=23%  Similarity=0.298  Sum_probs=43.2

Q ss_pred             eEEEEEEe---cCcchHHHHHHHHHHhCCccEEEEEEEecCCeEE-EEEEEEeCCCC
Q 028501          129 RSLLYIET---ADRPGLLVEIMKIIADVNVDVESAEIDTEGLVAK-DKFHVSYGGAA  181 (208)
Q Consensus       129 ~~~i~v~~---~Dr~GlL~~i~~~l~~~~i~I~~a~i~t~~~~~~-~~f~v~~~g~~  181 (208)
                      .+.|-+..   .|+||-|+++...|+.+|+|+.++..-...++.+ -.|+|+-+ +.
T Consensus       186 ktsl~f~~~~~~~~pGaL~~~L~~Fa~~gINLtkIESRP~~~~~~~Y~FfiD~e-~~  241 (267)
T 2qmw_A          186 ATSLMFLITPMHDKPGLLASVLNTFALFNINLSWIESRPLKTQLGMYRFFVQAD-SA  241 (267)
T ss_dssp             CSEEEEEEEESSCCTTHHHHHHHHHHTTTCCEEEEEEEECSSSTTCEEEEEEES-CC
T ss_pred             eEEEEEEcCCCCCCcChHHHHHHHHHHcCCCeeEEEEeecCCCCccEEEEEEEe-cC
Confidence            46666666   8999999999999999999999999998877644 47888767 54

>3tvi_A Aspartokinase; structural genomics, ACT domains, regulatory domains, kinase transferase, PSI-2, protein structure initiative; HET: LYS; 3.00A {Clostridium acetobutylicum}

Probab=95.48  E-value=0.12  Score=45.48  Aligned_cols=109  Identities=12%  Similarity=0.174  Sum_probs=70.2

Q ss_pred             CeEEEEEEe---CCcccHHHHHHHHHHHCCceEEEEEEEecCCeeEEEEEEeeCCCCCCCCCHHHHHHHHHHHHHhhccC
Q 028501           13 DATIVQLSF---GDRLGALIDTMNALKDLGLDVAKGTVNTEGSVKQTKFFITRLDTGRKVEDPDLLERIRLTIINNLLKY   89 (208)
Q Consensus        13 ~~~~v~v~~---~DrpGLl~~i~~~L~~~gl~I~~a~i~t~~~~~~d~F~v~~~~~g~~~~~~~~~~~l~~~L~~~l~~~   89 (208)
                      +.+.|+|.+   ++.||.+++|...|+++|++|.-  |.+....+  +|.|...+ -.     .....+.+.|...+.  
T Consensus       297 ~~~~i~i~~~~~~~~~g~~~~if~~l~~~~i~vd~--i~~~~~~i--s~~V~~~d-~~-----~~~~~~~~el~~~~~--  364 (446)
T 3tvi_A          297 NFTVIAIEKALLNSEVGFCRKILSILEMYGVSFEH--MPSGVDSV--SLVIEDCK-LD-----GKCDKIIEEIKKQCN--  364 (446)
T ss_dssp             EEEEEEEECTTGGGSTTHHHHHHHHHHTTTCCEEE--BCEETTEE--EEEEEHHH-HT-----TTHHHHHHHHHHHSC--
T ss_pred             CEEEEEEEecCCCccHHHHHHHHHHHHHcCCcEEE--EecCCCEE--EEEEecch-HH-----HHHHHHHHHHHHhcC--
Confidence            456788886   68999999999999999999983  33322222  36665431 10     012333333333221  


Q ss_pred             CCCchhhhhccccccCCCCCcccCCccccEEEEecCCCCeEEEEEEec---CcchHHHHHHHHHHhCCccEEEEEEE
Q 028501           90 HPESSEQLAMGEAFGIKAPEKKLDVDIATHIHVKEDGPKRSLLYIETA---DRPGLLVEIMKIIADVNVDVESAEID  163 (208)
Q Consensus        90 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~V~~~~~~~~~~~i~v~~~---Dr~GlL~~i~~~l~~~~i~I~~a~i~  163 (208)
                                                 +.+|.+..   +...|.|.|.   .+||+.+.+.++|++.|+||..+.-.
T Consensus       365 ---------------------------~~~v~v~~---~vA~VSvVG~gM~~~~Gvaarif~aLa~~~InI~mIsqg  411 (446)
T 3tvi_A          365 ---------------------------PDSIEIHP---NMALVATVGTGMAKTKGIANKIFTALSKENVNIRMIDQG  411 (446)
T ss_dssp             ---------------------------CSEEEEEE---EEEEEEEECGGGSSCTTHHHHHHHHHHHTTCCEEEEEEC
T ss_pred             ---------------------------CCcEEEeC---CeEEEEEECCCccCChhHHHHHHHHHHHCCCCEEEEEec
Confidence                                       01133322   2367888876   58999999999999999999877643

>1ygy_A PGDH, D-3-phosphoglycerate dehydrogenase; oxidoreductase, serine biosy structural genomics, PSI, protein structure initiative; HET: TAR; 2.30A {Mycobacterium tuberculosis} SCOP: c.2.1.4 c.23.12.1 d.58.18.1 d.81.2.2 PDB: 3dc2_A* 3ddn_A*

Probab=95.29  E-value=0.13  Score=46.30  Aligned_cols=62  Identities=18%  Similarity=0.306  Sum_probs=46.8

Q ss_pred             CeEEEEEEecCcchHHHHHHHHHHhCCccEEEEEEEecC--CeEEEEEEEEeCCCCCChHHHHHHHH
Q 028501          128 KRSLLYIETADRPGLLVEIMKIIADVNVDVESAEIDTEG--LVAKDKFHVSYGGAALNSSLSQVLVN  192 (208)
Q Consensus       128 ~~~~i~v~~~Dr~GlL~~i~~~l~~~~i~I~~a~i~t~~--~~~~~~f~v~~~g~~~~~~~~~~l~~  192 (208)
                      .++.+.+.-.|+||.+..|+..|.++|+||.++++....  +.+..++.++   .+++++..++|++
T Consensus       453 ~~~~l~v~~~D~PG~I~~v~~~Lg~~~INIa~m~v~r~~~~~~a~~~i~vd---~~~~~~~l~~l~~  516 (529)
T 1ygy_A          453 QGINLIIHYVDRPGALGKIGTLLGTAGVNIQAAQLSEDAEGPGATILLRLD---QDVPDDVRTAIAA  516 (529)
T ss_dssp             CSEEEEEEESCCTTHHHHHHHHHHHTTCCEEEEEEEECSSSSCEEEEEEES---SCCCHHHHHHHHH
T ss_pred             CccEEEEEcCCCCchHHHHHHHHHhcCCCeeeEEEecCCCCCEEEEEEEEC---CCCCHHHHHHHhc
Confidence            467888899999999999999999999999999998754  3354455552   2345666666653

>3l76_A Aspartokinase; allostery, ACT domains, kinase transferase; HET: LYS; 2.54A {Synechocystis}

Probab=95.20  E-value=0.41  Score=43.67  Aligned_cols=111  Identities=16%  Similarity=0.196  Sum_probs=72.7

Q ss_pred             CCeEEEEEE-eCCcccHHHHHHHHHHHCCceEEEEEEEecC---Ce--e-EEEEEEeeCCCCCCCCCHHHHHHHHHHHHH
Q 028501           12 SDATIVQLS-FGDRLGALIDTMNALKDLGLDVAKGTVNTEG---SV--K-QTKFFITRLDTGRKVEDPDLLERIRLTIIN   84 (208)
Q Consensus        12 ~~~~~v~v~-~~DrpGLl~~i~~~L~~~gl~I~~a~i~t~~---~~--~-~d~F~v~~~~~g~~~~~~~~~~~l~~~L~~   84 (208)
                      ++...|+|. .+|+||+.++|.+.|++.|++|.--..+...   ++  . --+|.+...          .+++..+.|++
T Consensus       442 ~~~a~i~i~~~~~~~g~~~~if~~La~~~I~vDmI~q~~~~~~~~g~~~~~isftv~~~----------d~~~a~~~l~~  511 (600)
T 3l76_A          442 QDQAQIAIRHVPDRPGMAAQLFTALAEANISVDMIIQSQRCRINQGTPCRDIAFMVAEG----------DSSQAEAILQP  511 (600)
T ss_dssp             CSEEEEEEEEEESSTTHHHHHHHHHHHTTCCCCEEEEEEECCCSSSSCEEEEEEEEEHH----------HHHHHHHHHHH
T ss_pred             CCEEEEEEecCCCCccHHHHHHHHHHHcCCcEEEEEecccccccCCCccceEEEEEeHH----------HHHHHHHHHHH
Confidence            466778776 5999999999999999999999633333222   12  1 223655432          23444444444


Q ss_pred             hhccCCCCchhhhhccccccCCCCCcccCCccccEEEEecCCCCeEEEEEEe---cCcchHHHHHHHHHHhCCccEEEEE
Q 028501           85 NLLKYHPESSEQLAMGEAFGIKAPEKKLDVDIATHIHVKEDGPKRSLLYIET---ADRPGLLVEIMKIIADVNVDVESAE  161 (208)
Q Consensus        85 ~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~V~~~~~~~~~~~i~v~~---~Dr~GlL~~i~~~l~~~~i~I~~a~  161 (208)
                       +..   ..          +            +.+|.++.   +...|.+.|   ..+||+.+.+.++|++.||||....
T Consensus       512 -~~~---~~----------~------------~~~v~~~~---~~akVSiVG~GM~~~~Gvaa~~f~aL~~~~Ini~mis  562 (600)
T 3l76_A          512 -LIK---DW----------L------------DAAIVVNK---AIAKVSIVGSGMIGHPGVAAHFFAALAQENINIEMIA  562 (600)
T ss_dssp             -HTT---TS----------T------------TCEEEEEC---CEEEEEEECGGGTTCTTHHHHHHHHHHTTTCCCCEEE
T ss_pred             -HHH---hc----------C------------CceEEEeC---CeEEEEEECcccccCccHHHHHHHHHHHCCCceEEEE
Confidence             211   00          0            11234333   347788887   4899999999999999999998777

>3l76_A Aspartokinase; allostery, ACT domains, kinase transferase; HET: LYS; 2.54A {Synechocystis}

Probab=94.99  E-value=1.7  Score=39.66  Aligned_cols=136  Identities=17%  Similarity=0.263  Sum_probs=80.6

Q ss_pred             CCeEEEEEEeC---CcccHHHHHHHHHHHCCceEEEEEEEecCCeeEEEEEEeeCCCCCCCCCHHHHHHHHHHHHHhhcc
Q 028501           12 SDATIVQLSFG---DRLGALIDTMNALKDLGLDVAKGTVNTEGSVKQTKFFITRLDTGRKVEDPDLLERIRLTIINNLLK   88 (208)
Q Consensus        12 ~~~~~v~v~~~---DrpGLl~~i~~~L~~~gl~I~~a~i~t~~~~~~d~F~v~~~~~g~~~~~~~~~~~l~~~L~~~l~~   88 (208)
                      ++...|.|.+.   .+||..+++..+|.+.|+||....  +. +. --.|.|...+          .++..+.|.+.+..
T Consensus       353 ~~~a~VsvVG~gm~~~~Gv~a~if~aL~~~~Ini~~is--tS-e~-~Is~vI~~~d----------~~~Av~aLh~~f~~  418 (600)
T 3l76_A          353 KGIAKIAIAGAGMIGRPGIAAKMFKTLADVGVNIEMIS--TS-EV-KVSCVIDQRD----------ADRAIAALSNAFGV  418 (600)
T ss_dssp             CSEEEEEEECGGGTTCTTHHHHHHHHHHHTTCCCCEEE--EC-SS-EEEEEEEGGG----------HHHHHHHHHHHTTC
T ss_pred             CCeEEEEEECCCcccCccHHHHHHHHHHhCCCcEEEEe--cC-CC-EEEEEEcHHH----------HHHHHHHHHHhhcc
Confidence            46678999975   799999999999999999998443  33 22 2236565332          23344455555532


Q ss_pred             CCCCchhhhhccccccCCCCCcccCCccccEEEEecCCCCeEEEEEE-ecCcchHHHHHHHHHHhCCccEEEEEEEecC-
Q 028501           89 YHPESSEQLAMGEAFGIKAPEKKLDVDIATHIHVKEDGPKRSLLYIE-TADRPGLLVEIMKIIADVNVDVESAEIDTEG-  166 (208)
Q Consensus        89 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~V~~~~~~~~~~~i~v~-~~Dr~GlL~~i~~~l~~~~i~I~~a~i~t~~-  166 (208)
                      ...  + .         ..+.....-+.-+-|..+.+   .+.|.+. .+|+||+.++|...|++.|+||.-...+... 
T Consensus       419 ~~t--~-~---------~~~~~~~~~~~v~Gia~~~~---~a~i~i~~~~~~~g~~~~if~~La~~~I~vDmI~q~~~~~  483 (600)
T 3l76_A          419 TLS--P-P---------KNQTDTSHLPAVRGVALDQD---QAQIAIRHVPDRPGMAAQLFTALAEANISVDMIIQSQRCR  483 (600)
T ss_dssp             CBC--C-C---------CCCCC---CCSCCEEEEECS---EEEEEEEEEESSTTHHHHHHHHHHHTTCCCCEEEEEEECC
T ss_pred             cCC--C-c---------cccccccccCceEEEEeeCC---EEEEEEecCCCCccHHHHHHHHHHHcCCcEEEEEeccccc
Confidence            100  0 0         00000000111123444433   3556664 5899999999999999999999766655422 


Q ss_pred             ---C--eEEEEEEEE
Q 028501          167 ---L--VAKDKFHVS  176 (208)
Q Consensus       167 ---~--~~~~~f~v~  176 (208)
                         +  ...-.|.+.
T Consensus       484 ~~~g~~~~~isftv~  498 (600)
T 3l76_A          484 INQGTPCRDIAFMVA  498 (600)
T ss_dssp             CSSSSCEEEEEEEEE
T ss_pred             ccCCCccceEEEEEe
Confidence               2  234457774

>2cdq_A Aspartokinase; aspartate kinase, amino acid metabolism, ACT domain, alloste S-adenosylmethionine, lysine, allosteric effector, plant; HET: TAR SAM LYS; 2.85A {Arabidopsis thaliana} SCOP: c.73.1.3 d.58.18.10 d.58.18.10

Probab=94.05  E-value=0.39  Score=43.02  Aligned_cols=122  Identities=14%  Similarity=0.203  Sum_probs=73.3

Q ss_pred             CeEEEEEEe---CCcccHHHHHHHHHHHCCceEEEEEEEecCCeeEEEEEEeeCCCCCCCCCHHHHHHHHHHHHHhhccC
Q 028501           13 DATIVQLSF---GDRLGALIDTMNALKDLGLDVAKGTVNTEGSVKQTKFFITRLDTGRKVEDPDLLERIRLTIINNLLKY   89 (208)
Q Consensus        13 ~~~~v~v~~---~DrpGLl~~i~~~L~~~gl~I~~a~i~t~~~~~~d~F~v~~~~~g~~~~~~~~~~~l~~~L~~~l~~~   89 (208)
                      +.+.|+|.+   .++||++++|..+|+++|++|.--  .+....+  +|.|...+ ......  ..+.++..+.+ +.. 
T Consensus       340 ~~~~I~i~~~~m~~~~g~~~~if~~la~~~I~vd~I--~sse~si--s~~v~~~~-~~~~~~--~~~~l~~~~~e-l~~-  410 (510)
T 2cdq_A          340 NVTMLDIASTRMLGQVGFLAKVFSIFEELGISVDVV--ATSEVSI--SLTLDPSK-LWSREL--IQQELDHVVEE-LEK-  410 (510)
T ss_dssp             EEEEEEEECGGGTTCTTHHHHHHHHHHHTTCCEEEE--EEETTEE--EEEECCGG-GSSSCC--CHHHHHHHHHH-HTT-
T ss_pred             CeEEEEEEcCCCCCcccHHHHHHHHHHHcCCcEEEE--EeCCCeE--EEEEechH-hhhhhH--HHHHHHHHHHH-hCC-
Confidence            557888885   679999999999999999999944  4433333  36665331 111000  01122221111 211 


Q ss_pred             CCCchhhhhccccccCCCCCcccCCccccEEEEecCCCCeEEEEEEec--CcchHHHHHHHHHHhCCccEEEEEEEecCC
Q 028501           90 HPESSEQLAMGEAFGIKAPEKKLDVDIATHIHVKEDGPKRSLLYIETA--DRPGLLVEIMKIIADVNVDVESAEIDTEGL  167 (208)
Q Consensus        90 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~V~~~~~~~~~~~i~v~~~--Dr~GlL~~i~~~l~~~~i~I~~a~i~t~~~  167 (208)
                                              +   .+|.+..   +...|.+.|.  .+||+.+.+..+|++.|+||..+.-   |.
T Consensus       411 ------------------------~---~~v~~~~---~~a~VsiVG~m~~~~Gvaa~~f~aL~~~~InI~mIsq---Gs  457 (510)
T 2cdq_A          411 ------------------------I---AVVNLLK---GRAIISLIGNVQHSSLILERAFHVLYTKGVNVQMISQ---GA  457 (510)
T ss_dssp             ------------------------T---SEEEEEE---EEEEEEEEECGGGHHHHHHHHHHHHHHHTCCCSEEEE---CT
T ss_pred             ------------------------C---CeEEEeC---CcEEEEEEEECCCChhHHHHHHHHHHHCCCCEEEEEe---cC
Confidence                                    0   1133322   2356777776  7889999999999999999987743   32


Q ss_pred             e-EEEEEEEE
Q 028501          168 V-AKDKFHVS  176 (208)
Q Consensus       168 ~-~~~~f~v~  176 (208)
                      . ..-.|.|.
T Consensus       458 Sei~Is~vV~  467 (510)
T 2cdq_A          458 SKVNISFIVN  467 (510)
T ss_dssp             TCSEEEEEEE
T ss_pred             CcceEEEEEe
Confidence            2 22346664

>3mah_A Aspartokinase; aspartate kinase, structural genomics, MCSG, transferase, PSI-2; 2.31A {Porphyromonas gingivalis}

Probab=93.95  E-value=0.11  Score=38.93  Aligned_cols=112  Identities=13%  Similarity=0.073  Sum_probs=66.9

Q ss_pred             CeEEEEEEe---CCcccHHHHHHHHHHHCCceEEEEEEEecCCeeEEEEEEeeCCCCCCCCCHHHHHHHHHHHHHhhccC
Q 028501           13 DATIVQLSF---GDRLGALIDTMNALKDLGLDVAKGTVNTEGSVKQTKFFITRLDTGRKVEDPDLLERIRLTIINNLLKY   89 (208)
Q Consensus        13 ~~~~v~v~~---~DrpGLl~~i~~~L~~~gl~I~~a~i~t~~~~~~d~F~v~~~~~g~~~~~~~~~~~l~~~L~~~l~~~   89 (208)
                      +...|+|.+   ++.||..+++.++|++.|++|.  -|.+.....  +|++...   .      .   +++.+++ +.. 
T Consensus        17 ~va~Iti~~~~m~~~~g~~~~if~~La~~~I~vd--~I~~s~~~I--sf~v~~~---~------~---~~~il~~-l~~-   78 (157)
T 3mah_A           17 GITVIKVKSSNKLLSWHFMRKLFEIFEFYQEPVD--MVATSEVGV--SLTIDND---K------N---LPDIVRA-LSD-   78 (157)
T ss_dssp             EEEEEEEEECTTSCHHHHHHHHHHHHHHTTCCCS--CEECCSSEE--EEEESCC---T------T---HHHHHHH-HTT-
T ss_pred             CEEEEEEEeCCCCCchhHHHHHHHHHHHcCCCEE--EEEecCCEE--EEEECCh---H------H---HHHHHHH-Hhc-
Confidence            567888884   5789999999999999999997  344443322  3666422   1      1   2222222 211 


Q ss_pred             CCCchhhhhccccccCCCCCcccCCccccEEEEecCCCCeEEEEEEec---CcchHHHHHHHHHHhCCccEEEEEEEecC
Q 028501           90 HPESSEQLAMGEAFGIKAPEKKLDVDIATHIHVKEDGPKRSLLYIETA---DRPGLLVEIMKIIADVNVDVESAEIDTEG  166 (208)
Q Consensus        90 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~V~~~~~~~~~~~i~v~~~---Dr~GlL~~i~~~l~~~~i~I~~a~i~t~~  166 (208)
                                              +   ..|.+.+   +...+.+.|.   ++||+.+.+..+|+  |+||....-.+. 
T Consensus        79 ------------------------~---~~v~~~~---~~a~vsvvG~gm~~~~gv~a~~f~aL~--~Ini~~isqg~S-  125 (157)
T 3mah_A           79 ------------------------I---GDVTVDK---DMVIICIVGDMEWDNVGFEARIINALK--GVPVRMISYGGS-  125 (157)
T ss_dssp             ------------------------T---EEEEEEE---EEEEEEEEC------CCHHHHHHHTTT--TSCCSEEEECSS-
T ss_pred             ------------------------c---CeEEEeC---CeEEEEEECCCcccCccHHHHHHHHhC--CCCeEEEeeCCC-
Confidence                                    0   1122222   2366777765   68999999999999  898877653322 


Q ss_pred             CeEEEEEEEE
Q 028501          167 LVAKDKFHVS  176 (208)
Q Consensus       167 ~~~~~~f~v~  176 (208)
                       ...-.|.+.
T Consensus       126 -e~~is~vv~  134 (157)
T 3mah_A          126 -NYNVSVLVK  134 (157)
T ss_dssp             -SSCEEEEEE
T ss_pred             -CCEEEEEEc
Confidence             122345664

>3mtj_A Homoserine dehydrogenase; rossmann-fold, PSI, MCSG, structural genomics, midwest cente structural genomics; 2.15A {Thiobacillus denitrificans}

Probab=92.85  E-value=0.28  Score=43.22  Aligned_cols=37  Identities=27%  Similarity=0.539  Sum_probs=32.1

Q ss_pred             CeEEEEEEecCcchHHHHHHHHHHhCCccEEEEEEEe
Q 028501          128 KRSLLYIETADRPGLLVEIMKIIADVNVDVESAEIDT  164 (208)
Q Consensus       128 ~~~~i~v~~~Dr~GlL~~i~~~l~~~~i~I~~a~i~t  164 (208)
                      ..+-+.+...|+||.|++|+.+|.++|++|.++.-..
T Consensus       358 ~~yy~r~~~~d~~gvl~~i~~~~~~~~isi~~~~q~~  394 (444)
T 3mtj_A          358 TAYYLRLRAFDRPGVLADITRILADSSISIDAMVQKE  394 (444)
T ss_dssp             EEEEEEEEEC-CCHHHHHHHHHHHHTTCCEEEEEECC
T ss_pred             eeeEEEEEecCcccHHHHHHHHHHhcCCceeEEeecc
Confidence            4678889999999999999999999999999987653

>1sc6_A PGDH, D-3-phosphoglycerate dehydrogenase; allosteric regulation phosphoglycerate dehydrogenase PGDH, oxidoreductase; HET: NAD; 2.09A {Escherichia coli} SCOP: c.2.1.4 c.23.12.1 d.58.18.1 PDB: 1psd_A* 1yba_A* 2p9c_A* 2p9e_A* 2pa3_A* 2p9g_A*

Probab=92.57  E-value=0.46  Score=41.24  Aligned_cols=48  Identities=15%  Similarity=0.169  Sum_probs=40.2

Q ss_pred             CeEEEEEEeCCcccHHHHHHHHHHHCCceEEEEEEEecCCeeEEEEEE
Q 028501           13 DATIVQLSFGDRLGALIDTMNALKDLGLDVAKGTVNTEGSVKQTKFFI   60 (208)
Q Consensus        13 ~~~~v~v~~~DrpGLl~~i~~~L~~~gl~I~~a~i~t~~~~~~d~F~v   60 (208)
                      +...|.+.-.|+||.+..|+.+|.++|+||....+.+.++.++-++-+
T Consensus       330 ~~~rl~~~h~d~PGvi~~i~~iL~~~~iNIa~m~~~r~g~~A~~vidv  377 (404)
T 1sc6_A          330 GGRRLMHIHENRPGVLTALNKIFAEQGVNIAAQYLQTSAQMGYVVIDI  377 (404)
T ss_dssp             SSEEEEEEEESCTTHHHHHHHHHHHTTCEEEEEEEEECSSEEEEEEEE
T ss_pred             CcceEEEEeCCCCCHHHHHHHHHHHcCCCHHHhhccCCCCEEEEEEEc
Confidence            345688889999999999999999999999999999977766544433

>1ygy_A PGDH, D-3-phosphoglycerate dehydrogenase; oxidoreductase, serine biosy structural genomics, PSI, protein structure initiative; HET: TAR; 2.30A {Mycobacterium tuberculosis} SCOP: c.2.1.4 c.23.12.1 d.58.18.1 d.81.2.2 PDB: 3dc2_A* 3ddn_A*

Probab=92.23  E-value=0.92  Score=40.60  Aligned_cols=40  Identities=18%  Similarity=0.292  Sum_probs=35.7

Q ss_pred             CeEEEEEEeCCcccHHHHHHHHHHHCCceEEEEEEEecCC
Q 028501           13 DATIVQLSFGDRLGALIDTMNALKDLGLDVAKGTVNTEGS   52 (208)
Q Consensus        13 ~~~~v~v~~~DrpGLl~~i~~~L~~~gl~I~~a~i~t~~~   52 (208)
                      ....+.+.-+|+||.+..++..|.++|+||...++.....
T Consensus       453 ~~~~l~v~~~D~PG~I~~v~~~Lg~~~INIa~m~v~r~~~  492 (529)
T 1ygy_A          453 QGINLIIHYVDRPGALGKIGTLLGTAGVNIQAAQLSEDAE  492 (529)
T ss_dssp             CSEEEEEEESCCTTHHHHHHHHHHHTTCCEEEEEEEECSS
T ss_pred             CccEEEEEcCCCCchHHHHHHHHHhcCCCeeeEEEecCCC
Confidence            4567888899999999999999999999999999988643

>1phz_A Protein (phenylalanine hydroxylase); aromatic amino acid hydroxylase, phosphorylation, intrasteric regulation, allosteric regulation; 2.20A {Rattus norvegicus} SCOP: d.58.18.3 d.178.1.1 PDB: 2phm_A

Probab=91.72  E-value=0.25  Score=43.12  Aligned_cols=68  Identities=12%  Similarity=0.229  Sum_probs=49.5

Q ss_pred             CeEEEEEEecCcchHHHHHHHHHHhCCccEEEEEEEecCCe-EEEEEEEEeCCCCCChHHHHHHHHHHHHH
Q 028501          128 KRSLLYIETADRPGLLVEIMKIIADVNVDVESAEIDTEGLV-AKDKFHVSYGGAALNSSLSQVLVNCLRYY  197 (208)
Q Consensus       128 ~~~~i~v~~~Dr~GlL~~i~~~l~~~~i~I~~a~i~t~~~~-~~~~f~v~~~g~~~~~~~~~~l~~~l~~~  197 (208)
                      ..+.|-+...|+||-|+++...|+.+|||+.++..-..... ..=.|+|+-+ .. .++..+.+.+.|...
T Consensus        33 dKTSLiFsl~n~pGAL~~~L~~Fa~~gINLTkIESRPsk~~~~eY~FfVD~e-h~-~d~~v~~AL~eL~~~  101 (429)
T 1phz_A           33 GAISLIFSLKEEVGALAKVLRLFEENDINLTHIESRPSRLNKDEYEFFTYLD-KR-TKPVLGSIIKSLRND  101 (429)
T ss_dssp             CCEEEEEEEECCTTHHHHHHHHHHTTTCCTTSEEEEECSSCTTEEEEEECBC-GG-GHHHHHHHHHHHHHT
T ss_pred             CeEEEEEEeCCCccHHHHHHHHHHHcCCceEEEEeeecCCCCccEEEEEEEe-eC-CCHHHHHHHHHHHhh
Confidence            45777777789999999999999999999999999887665 4447888656 33 444333333444443

>3k5p_A D-3-phosphoglycerate dehydrogenase; niaid, ssgcid, seattle structural genomics center for infect disease, brucellosis; 2.15A {Brucella melitensis biovar abortus}

Probab=91.56  E-value=0.59  Score=40.75  Aligned_cols=49  Identities=18%  Similarity=0.357  Sum_probs=43.8

Q ss_pred             CeEEEEEEecCcchHHHHHHHHHHhCCccEEEEEEEecCCeEEEEEEEE
Q 028501          128 KRSLLYIETADRPGLLVEIMKIIADVNVDVESAEIDTEGLVAKDKFHVS  176 (208)
Q Consensus       128 ~~~~i~v~~~Dr~GlL~~i~~~l~~~~i~I~~a~i~t~~~~~~~~f~v~  176 (208)
                      ....+.+.-.|.||+|..|+.+|+++|+||......|.++-+..+.-++
T Consensus       342 ~~~r~~~~h~n~p~~~~~i~~~~~~~~~ni~~~~~~~~~~~~y~~~d~~  390 (416)
T 3k5p_A          342 TGTRFMHVHENRPGILNSLMNVFSHHHINIASQFLQTDGEVGYLVMEAD  390 (416)
T ss_dssp             SSEEEEEEECCCTTHHHHHHHHHHHTTCCEEEEEEEECSSCEEEEEEEC
T ss_pred             CceEEEEEecCCccHHHHHHHHHHHcCCCHHHHhccCCCceEEEEEEec
Confidence            4678999999999999999999999999999999999888877766664

>2re1_A Aspartokinase, alpha and beta subunits; structural genomics, protein structure initiative, midwest center for structural genomics; 2.75A {Neisseria meningitidis MC58}

Probab=91.01  E-value=0.67  Score=34.83  Aligned_cols=48  Identities=21%  Similarity=0.401  Sum_probs=35.4

Q ss_pred             eEEEEEEe-cCcchHHHHHHHHHHhCCccEEEEEEEecCC-eEEEEEEEE
Q 028501          129 RSLLYIET-ADRPGLLVEIMKIIADVNVDVESAEIDTEGL-VAKDKFHVS  176 (208)
Q Consensus       129 ~~~i~v~~-~Dr~GlL~~i~~~l~~~~i~I~~a~i~t~~~-~~~~~f~v~  176 (208)
                      .+.|+|.+ .|+||++++|...|+++|+||.....+...+ ...-.|.+.
T Consensus        25 ~~~i~v~~~~~~~G~~~~if~~La~~~Invd~i~~s~~~~g~~~isf~v~   74 (167)
T 2re1_A           25 QARINVRGVPDKPGVAYQILGAVADANIEVDMIIQNVGSEGTTDFSFTVP   74 (167)
T ss_dssp             CEEEEEEEEECCTTHHHHHHHHHHTTTCCCCCEEEC----CEEEEEEEEC
T ss_pred             EEEEEEecCCCCcCHHHHHHHHHHHcCCeEEEEEcCCCCCCeeEEEEEEe
Confidence            37788885 8999999999999999999998887653222 233457664

>3k5p_A D-3-phosphoglycerate dehydrogenase; niaid, ssgcid, seattle structural genomics center for infect disease, brucellosis; 2.15A {Brucella melitensis biovar abortus}

Probab=89.73  E-value=1.3  Score=38.63  Aligned_cols=43  Identities=23%  Similarity=0.285  Sum_probs=39.3

Q ss_pred             CeEEEEEEeCCcccHHHHHHHHHHHCCceEEEEEEEecCCeeE
Q 028501           13 DATIVQLSFGDRLGALIDTMNALKDLGLDVAKGTVNTEGSVKQ   55 (208)
Q Consensus        13 ~~~~v~v~~~DrpGLl~~i~~~L~~~gl~I~~a~i~t~~~~~~   55 (208)
                      +...|.+.-.|.||.+.+|..+|+++|+||..-...|.++.++
T Consensus       342 ~~~r~~~~h~n~p~~~~~i~~~~~~~~~ni~~~~~~~~~~~~y  384 (416)
T 3k5p_A          342 TGTRFMHVHENRPGILNSLMNVFSHHHINIASQFLQTDGEVGY  384 (416)
T ss_dssp             SSEEEEEEECCCTTHHHHHHHHHHHTTCCEEEEEEEECSSCEE
T ss_pred             CceEEEEEecCCccHHHHHHHHHHHcCCCHHHHhccCCCceEE
Confidence            5679999999999999999999999999999888888888774

>2dtj_A Aspartokinase; protein-ligand complex, regulatory subunit, transferase; HET: CIT; 1.58A {Corynebacterium glutamicum} PDB: 3aaw_B* 3ab2_B 3ab4_B*

Probab=88.76  E-value=1.4  Score=33.50  Aligned_cols=38  Identities=13%  Similarity=0.388  Sum_probs=31.6

Q ss_pred             CeEEEEEE-ecCcchHHHHHHHHHHhCCccEEEEEEEec
Q 028501          128 KRSLLYIE-TADRPGLLVEIMKIIADVNVDVESAEIDTE  165 (208)
Q Consensus       128 ~~~~i~v~-~~Dr~GlL~~i~~~l~~~~i~I~~a~i~t~  165 (208)
                      +.+.|+|. ..|+||++++|.+.|++.|+||.....++.
T Consensus        14 ~~~~Itv~~~~~~~G~~a~if~~La~~~InId~i~~s~~   52 (178)
T 2dtj_A           14 SEAKVTVLGISDKPGEAAKVFRALADAEINIDMVLQNVS   52 (178)
T ss_dssp             SEEEEEEEEEECSTTHHHHHHHHHHHTTCCCCEEEECCC
T ss_pred             CEEEEEEecCCCCccHHHHHHHHHHHcCCCEEEEEcCCC
Confidence            34677773 589999999999999999999988876654

>2dt9_A Aspartokinase; protein-ligand complex, regulatory subunit, transferase; 2.15A {Thermus thermophilus} PDB: 2zho_A

Probab=88.73  E-value=0.63  Score=34.95  Aligned_cols=50  Identities=14%  Similarity=0.240  Sum_probs=37.1

Q ss_pred             CeEEEEEEe-cCcchHHHHHHHHHHhCCccEEEEEEEec---CCeEEEEEEEEe
Q 028501          128 KRSLLYIET-ADRPGLLVEIMKIIADVNVDVESAEIDTE---GLVAKDKFHVSY  177 (208)
Q Consensus       128 ~~~~i~v~~-~Dr~GlL~~i~~~l~~~~i~I~~a~i~t~---~~~~~~~f~v~~  177 (208)
                      +.+.|++.+ .|+||++++|..+|++.|+||.....+..   .+...-.|.+..
T Consensus        15 ~~a~Itv~g~~~~~G~~a~if~~La~~~InVd~I~q~~~~~~~g~~~isf~V~~   68 (167)
T 2dt9_A           15 DHAQIGLIGIPDQPGIAAKVFQALAERGIAVDMIIQGVPGHDPSRQQMAFTVKK   68 (167)
T ss_dssp             SEEEEEEEEEECSTTHHHHHHHHHHHHTCCCSCEEBCCCCSCTTEEEEEEEEEG
T ss_pred             CEEEEEEecCCCCCCHHHHHHHHHHHcCCcEEEEEcCCCCCCCCceEEEEEEeh
Confidence            346777776 79999999999999999999988765432   123344677753

>2qmx_A Prephenate dehydratase; APC86053, L-Phe inhibition, PDT, CHL tepidum TLS, structural genomics, PSI-2, protein structure initiative; HET: PHE; 2.30A {Chlorobium tepidum tls}

Probab=87.80  E-value=3.6  Score=33.85  Aligned_cols=64  Identities=17%  Similarity=0.318  Sum_probs=43.3

Q ss_pred             eEEEEEEeCCcccHHHHHHHHHHHCCceEEEEEEEecCCe-eEEEEEEeeCCCCCCCCCHHHHHHHHHHHHH
Q 028501           14 ATIVQLSFGDRLGALIDTMNALKDLGLDVAKGTVNTEGSV-KQTKFFITRLDTGRKVEDPDLLERIRLTIIN   84 (208)
Q Consensus        14 ~~~v~v~~~DrpGLl~~i~~~L~~~gl~I~~a~i~t~~~~-~~d~F~v~~~~~g~~~~~~~~~~~l~~~L~~   84 (208)
                      .|.|.+..+|+||-|+++.+.|+..|+|...-.-.-..+. .--.|+|.-.  |.. .+    ..++++|++
T Consensus       200 ktsl~f~~~~~pGaL~~~L~~Fa~~gINLtkIESRP~~~~~~~Y~FfvD~e--g~~-~d----~~v~~aL~~  264 (283)
T 2qmx_A          200 KTSIVFALPNEQGSLFRALATFALRGIDLTKIESRPSRKKAFEYLFYADFI--GHR-ED----QNVHNALEN  264 (283)
T ss_dssp             EEEEEEEEECCTTHHHHHHHHHHTTTCCEEEEEEEECSSSTTEEEEEEEEE--SCT-TS----HHHHHHHHH
T ss_pred             eEEEEEEcCCCCchHHHHHHHHHHcCCCeeEEEeeEcCCCCcceEEEEEEe--cCC-Cc----HHHHHHHHH
Confidence            4566666689999999999999999999994444434332 3345888654  653 33    345555555

>3mwb_A Prephenate dehydratase; L-Phe, PSI, MCSG, structural genomics, midwest center for ST genomics, protein structure initiative, lyase; HET: MSE PHE; 2.00A {Arthrobacter aurescens}

Probab=85.98  E-value=4.5  Score=33.80  Aligned_cols=53  Identities=23%  Similarity=0.368  Sum_probs=37.2

Q ss_pred             CeEEEEEEeC-CcccHHHHHHHHHHHCCceEEEEEEEecCCe-eEEEEEEeeCCCCC
Q 028501           13 DATIVQLSFG-DRLGALIDTMNALKDLGLDVAKGTVNTEGSV-KQTKFFITRLDTGR   67 (208)
Q Consensus        13 ~~~~v~v~~~-DrpGLl~~i~~~L~~~gl~I~~a~i~t~~~~-~~d~F~v~~~~~g~   67 (208)
                      +.|.|.+..+ |+||-|+++.+.|+..|+|...-.-.-..+. .--.|+|.-.  |.
T Consensus       200 ~kTSl~f~~~~~~pGaL~~~L~~Fa~~gINLtkIESRP~~~~~~~Y~FfiD~e--g~  254 (313)
T 3mwb_A          200 DKTTVVVPLPEDHPGALMEILDQFASRGVNLSRIESRPTGQYLGHYFFSIDAD--GH  254 (313)
T ss_dssp             EEEEEEEECSSCCTTHHHHHHHHHHTTTCCEEEEEEEECSSSTTSEEEEEEEE--SC
T ss_pred             CeEEEEEEeCCCCCCHHHHHHHHHHHCCccEEEEEEeecCCCCccEEEEEEEe--CC
Confidence            4566767775 9999999999999999999984443333332 2234777654  65

>3luy_A Probable chorismate mutase; structural genomics, APC38059, 3-phenylp PSI-2, protein structure initiative; HET: PPY; 2.00A {Bifidobacterium adolescentis}

Probab=85.95  E-value=8.9  Score=32.21  Aligned_cols=63  Identities=17%  Similarity=0.211  Sum_probs=40.2

Q ss_pred             EEEEEEeC--CcccHHHHHHHHHHHCCceEEEEEEEecCCe-eEEEEEEeeCCCCCCCCCHHHHHHHHHHHHH
Q 028501           15 TIVQLSFG--DRLGALIDTMNALKDLGLDVAKGTVNTEGSV-KQTKFFITRLDTGRKVEDPDLLERIRLTIIN   84 (208)
Q Consensus        15 ~~v~v~~~--DrpGLl~~i~~~L~~~gl~I~~a~i~t~~~~-~~d~F~v~~~~~g~~~~~~~~~~~l~~~L~~   84 (208)
                      +.+.+..+  |+||-|+++.+.|+..|+|...-.-.-..+. .--.|+|.-.  |.. .+    ..+.++|++
T Consensus       207 ts~i~~~~~~~~pGaL~~~L~~Fa~~gINLtkIESRP~~~~~~~Y~FfiD~e--g~~-~d----~~v~~AL~~  272 (329)
T 3luy_A          207 ESVLTLIPLVTGPGVLANLLDVFRDAGLNMTSFISRPIKGRTGTYSFIVTLD--AAP-WE----ERFRDALVE  272 (329)
T ss_dssp             EEEEEEECSCCSTTHHHHHHHHHHHTTCCEEEEEEEEETTEEEEEEEEEEES--SCT-TS----HHHHHHHHH
T ss_pred             eEEEEEecCCCCCCHHHHHHHHHHHCCcceEEEEeeECCCCCccEEEEEEEe--CCc-CC----HHHHHHHHH
Confidence            44444444  7999999999999999999994444434443 3345777654  663 34    234444444

>4go7_X Aspartokinase; transferase; 2.00A {Mycobacterium tuberculosis} PDB: 4go5_X

Probab=83.40  E-value=1.2  Score=34.77  Aligned_cols=48  Identities=19%  Similarity=0.306  Sum_probs=34.9

Q ss_pred             eEEEEEEe-cCcchHHHHHHHHHHhCCccEEEEEEEec--CC-eEEEEEEEE
Q 028501          129 RSLLYIET-ADRPGLLVEIMKIIADVNVDVESAEIDTE--GL-VAKDKFHVS  176 (208)
Q Consensus       129 ~~~i~v~~-~Dr~GlL~~i~~~l~~~~i~I~~a~i~t~--~~-~~~~~f~v~  176 (208)
                      .+.|+|.+ +|+||++++|...|++.|+||.-+..+..  .. .....|.+.
T Consensus        35 ~a~Iti~g~~~~pG~aa~IF~~La~~~InVDmI~Qs~s~~~~~~~~~sftv~   86 (200)
T 4go7_X           35 EAKVTIVGLPDIPGYAAKVFRAVADADVNIDMVLQNVSKVEDGKTDITFTCS   86 (200)
T ss_dssp             EEEEEEEEEECSTTHHHHHHHHHHHTTCCCCCEECCCCC--CCEEEEEEEEE
T ss_pred             EEEEEEecCCCCccHHHHHHHHHHHhCcceEEEeeccccccccceEEEEecc
Confidence            46677654 79999999999999999999988765432  22 334456664

>2qmw_A PDT, prephenate dehydratase; APC85812, prephenate dehydratase (PDT), staphylococcus aureu aureus MU50, structural genomics, PSI-2; 2.30A {Staphylococcus aureus subsp} SCOP: c.94.1.1 d.58.18.3

Probab=80.41  E-value=12  Score=30.51  Aligned_cols=50  Identities=16%  Similarity=0.252  Sum_probs=35.3

Q ss_pred             CeEEEEEEe---CCcccHHHHHHHHHHHCCceEEEEEEEecCCe-eEEEEEEee
Q 028501           13 DATIVQLSF---GDRLGALIDTMNALKDLGLDVAKGTVNTEGSV-KQTKFFITR   62 (208)
Q Consensus        13 ~~~~v~v~~---~DrpGLl~~i~~~L~~~gl~I~~a~i~t~~~~-~~d~F~v~~   62 (208)
                      +.|.|.+..   +|+||-|+++.+.|+..|+|...-.-.-..+. .--.|+|.-
T Consensus       185 ~ktsl~f~~~~~~~~pGaL~~~L~~Fa~~gINLtkIESRP~~~~~~~Y~FfiD~  238 (267)
T 2qmw_A          185 NATSLMFLITPMHDKPGLLASVLNTFALFNINLSWIESRPLKTQLGMYRFFVQA  238 (267)
T ss_dssp             SCSEEEEEEEESSCCTTHHHHHHHHHHTTTCCEEEEEEEECSSSTTCEEEEEEE
T ss_pred             CeEEEEEEcCCCCCCcChHHHHHHHHHHcCCCeeEEEEeecCCCCccEEEEEEE
Confidence            345555666   89999999999999999999994444434332 233477754

>3s1t_A Aspartokinase; ACT domain, threonine binding, regulatory domain of aspartok transferase; 1.63A {Mycobacterium tuberculosis}

Probab=80.34  E-value=3.2  Score=31.65  Aligned_cols=48  Identities=19%  Similarity=0.293  Sum_probs=35.3

Q ss_pred             EEEEEE-ecCcchHHHHHHHHHHhCCccEEEEEEEec---CCeEEEEEEEEe
Q 028501          130 SLLYIE-TADRPGLLVEIMKIIADVNVDVESAEIDTE---GLVAKDKFHVSY  177 (208)
Q Consensus       130 ~~i~v~-~~Dr~GlL~~i~~~l~~~~i~I~~a~i~t~---~~~~~~~f~v~~  177 (208)
                      +.|+|. ..|+||++++|...|+++|+||.....+..   .+...-.|.+..
T Consensus        17 ~~Iti~~~~~~~G~~a~If~~La~~~I~vd~I~q~~s~~~~g~~~isftv~~   68 (181)
T 3s1t_A           17 AKVTIVGLPDIPGYAAKVFRAVADADVNIDMVLQNVSKVEDGKTDITFTCSR   68 (181)
T ss_dssp             EEEEEEEEESSTTHHHHHHHHHHHTTCCCCCEEECCCCTTTCEEEEEEEEET
T ss_pred             EEEEEecCCCCcCHHHHHHHHHHHcCCcEEEEEecCCcccCCccEEEEEEeh
Confidence            555553 569999999999999999999987765432   233455677764

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	208
d1y7pa2	77	d.58.18.12 (A:2-78) Hypothetical protein AF1403, N	0.004

>d1y7pa2 d.58.18.12 (A:2-78) Hypothetical protein AF1403, N-terminal domain {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} Length = 77

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: AF1403 N-terminal domain-like
domain: Hypothetical protein AF1403, N-terminal domain
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

 Score = 32.8 bits (75), Expect = 0.004
 Identities = 8/33 (24%), Positives = 17/33 (51%)

Query: 132 LYIETADRPGLLVEIMKIIADVNVDVESAEIDT 164
           L I   ++ G+L ++  IIA+   ++  A+   
Sbjct: 4   LRIIAENKIGVLRDLTTIIAEEGGNITFAQTFL 36

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	208
d1u8sa1	86	putative transcriptional repressor VC2159 {Vibrio	98.98
d1u8sa1	86	putative transcriptional repressor VC2159 {Vibrio	98.89
d1zpva1	83	UPF0237 protein SP0238 {Streptococcus pneumoniae [	98.83
d1zpva1	83	UPF0237 protein SP0238 {Streptococcus pneumoniae [	98.8
d1u8sa2	93	putative transcriptional repressor VC2159 {Vibrio	98.57
d1u8sa2	93	putative transcriptional repressor VC2159 {Vibrio	98.26
d1ygya3	78	Phosphoglycerate dehydrogenase, regulatory (C-term	98.21
d2f06a1	71	Hypothetical protein BT0572 {Bacteroides thetaiota	98.13
d2f06a1	71	Hypothetical protein BT0572 {Bacteroides thetaiota	98.1
d2f06a2	70	Hypothetical protein BT0572 {Bacteroides thetaiota	98.04
d1y7pa2	77	Hypothetical protein AF1403, N-terminal domain {Ar	98.04
d2f06a2	70	Hypothetical protein BT0572 {Bacteroides thetaiota	97.93
d1y7pa2	77	Hypothetical protein AF1403, N-terminal domain {Ar	97.78
d1sc6a3	84	Phosphoglycerate dehydrogenase, regulatory (C-term	97.77
d2f1fa1	76	Acetolactate synthase small subunit, IlvH {Escheri	97.74
d2fgca2	78	Acetolactate synthase small subunit, IlvH {Thermot	97.74
d2fgca2	78	Acetolactate synthase small subunit, IlvH {Thermot	97.71
d2f1fa1	76	Acetolactate synthase small subunit, IlvH {Escheri	97.69
d1ygya3	78	Phosphoglycerate dehydrogenase, regulatory (C-term	97.69
d2pc6a2	77	Acetolactate synthase small subunit, IlvH {Nitroso	97.64
d2pc6a2	77	Acetolactate synthase small subunit, IlvH {Nitroso	97.62
d1sc6a3	84	Phosphoglycerate dehydrogenase, regulatory (C-term	97.53
d2qmwa2	80	Prephenate dehydratase C-terminal domain {Staphylo	97.44
d1phza1	97	Phenylalanine hydroxylase N-terminal domain {Rat (	97.36
d1phza1	97	Phenylalanine hydroxylase N-terminal domain {Rat (	94.21
d2qmwa2	80	Prephenate dehydratase C-terminal domain {Staphylo	94.16
d2hmfa3	100	Aspartokinase {Methanococcus jannaschii [TaxId: 21	92.72
d2cdqa2	91	Aspartokinase {Thale cress (Arabidopsis thaliana)	92.69
d2cdqa2	91	Aspartokinase {Thale cress (Arabidopsis thaliana)	92.03
d2hmfa3	100	Aspartokinase {Methanococcus jannaschii [TaxId: 21	90.28
d2hmfa2	67	Aspartokinase {Methanococcus jannaschii [TaxId: 21	89.99
d2hmfa2	67	Aspartokinase {Methanococcus jannaschii [TaxId: 21	89.77
d2cdqa3	75	Aspartokinase {Thale cress (Arabidopsis thaliana)	82.01

>d1u8sa1 d.58.18.5 (A:2-87) putative transcriptional repressor VC2159 {Vibrio cholerae [TaxId: 666]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: Glycine cleavage system transcriptional repressor
domain: putative transcriptional repressor VC2159
species: Vibrio cholerae [TaxId: 666]

Probab=98.98  E-value=2.4e-09  Score=72.42  Aligned_cols=65  Identities=14%  Similarity=0.200  Sum_probs=54.5

Q ss_pred             CCeEEEEEEeCCcccHHHHHHHHHHHCCceEEEEEEEecCCeeEEEEEEeeCCCCCCCCCHHHHHHHHHHHHH
Q 028501           12 SDATIVQLSFGDRLGALIDTMNALKDLGLDVAKGTVNTEGSVKQTKFFITRLDTGRKVEDPDLLERIRLTIIN   84 (208)
Q Consensus        12 ~~~~~v~v~~~DrpGLl~~i~~~L~~~gl~I~~a~i~t~~~~~~d~F~v~~~~~g~~~~~~~~~~~l~~~L~~   84 (208)
                      ..+++|++.|+||||++++++++|+++||||.+++..+.++.+.-.+.|.-+        +..++++++.|.+
T Consensus         3 ~~~~vitv~G~DrpGiva~vt~~l~~~g~NI~d~~~~~~~~~~~~~~~v~~~--------~~~~~~l~~~L~~   67 (86)
T d1u8sa1           3 TQHLVITAVGTDRPGICNEVVRLVTQAGCNIIDSRIAMFGKEFTLLMLISGS--------PSNITRVETTLPL   67 (86)
T ss_dssp             CEEEEEEEEEECCTTHHHHHHHHHHHTTCEEEEEEEEEETTEEEEEEEEEEC--------HHHHHHHHHHHHH
T ss_pred             ccEEEEEEEeCCCChHHHHHHHHHHHCCCeEEEeEeEEECCeeEEEEEEEcC--------cccHHHHHHHHHH
Confidence            3568999999999999999999999999999999999999988756666532        2456778887776

>d1u8sa1 d.58.18.5 (A:2-87) putative transcriptional repressor VC2159 {Vibrio cholerae [TaxId: 666]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: Glycine cleavage system transcriptional repressor
domain: putative transcriptional repressor VC2159
species: Vibrio cholerae [TaxId: 666]

Probab=98.89  E-value=1.1e-08  Score=69.01  Aligned_cols=51  Identities=16%  Similarity=0.265  Sum_probs=47.0

Q ss_pred             CCeEEEEEEecCcchHHHHHHHHHHhCCccEEEEEEEecCCeEEEEEEEEe
Q 028501          127 PKRSLLYIETADRPGLLVEIMKIIADVNVDVESAEIDTEGLVAKDKFHVSY  177 (208)
Q Consensus       127 ~~~~~i~v~~~Dr~GlL~~i~~~l~~~~i~I~~a~i~t~~~~~~~~f~v~~  177 (208)
                      .++++|++.|+||||++++++++|+++|+||..++..+.++.....+.++.
T Consensus         3 ~~~~vitv~G~DrpGiva~vt~~l~~~g~NI~d~~~~~~~~~~~~~~~v~~   53 (86)
T d1u8sa1           3 TQHLVITAVGTDRPGICNEVVRLVTQAGCNIIDSRIAMFGKEFTLLMLISG   53 (86)
T ss_dssp             CEEEEEEEEEECCTTHHHHHHHHHHHTTCEEEEEEEEEETTEEEEEEEEEE
T ss_pred             ccEEEEEEEeCCCChHHHHHHHHHHHCCCeEEEeEeEEECCeeEEEEEEEc
Confidence            357899999999999999999999999999999999999999888888864

>d1zpva1 d.58.18.7 (A:1-83) UPF0237 protein SP0238 {Streptococcus pneumoniae [TaxId: 1313]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: SP0238-like
domain: UPF0237 protein SP0238
species: Streptococcus pneumoniae [TaxId: 1313]

Probab=98.83  E-value=1.9e-08  Score=67.26  Aligned_cols=49  Identities=12%  Similarity=0.184  Sum_probs=43.7

Q ss_pred             EEEEEEecCcchHHHHHHHHHHhCCccEEEEEEEecCCeEEEEEEEEeC
Q 028501          130 SLLYIETADRPGLLVEIMKIIADVNVDVESAEIDTEGLVAKDKFHVSYG  178 (208)
Q Consensus       130 ~~i~v~~~Dr~GlL~~i~~~l~~~~i~I~~a~i~t~~~~~~~~f~v~~~  178 (208)
                      ++|++.|+||||++++||.+|+++|+||.+++..+.++.....+.+.-.
T Consensus         3 ~vitv~g~DrpGiVa~vt~~l~~~g~NI~d~~q~~~~~~f~~~~~v~~~   51 (83)
T d1zpva1           3 AIITVVGKDKSGIVAGVSGKIAELGLNIDDISQTVLDEYFTMMAVVSSD   51 (83)
T ss_dssp             EEEEEEESCCTTHHHHHHHHHHHTTCEEEEEEEEEETTEEEEEEEEEES
T ss_pred             EEEEEEcCCCCCHHHHHHHHHHHCCCeEEEEEeEEeCCEEEEEEEEEEe
Confidence            6899999999999999999999999999999999888877766777643

>d1zpva1 d.58.18.7 (A:1-83) UPF0237 protein SP0238 {Streptococcus pneumoniae [TaxId: 1313]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: SP0238-like
domain: UPF0237 protein SP0238
species: Streptococcus pneumoniae [TaxId: 1313]

Probab=98.80  E-value=2.7e-08  Score=66.49  Aligned_cols=63  Identities=13%  Similarity=0.181  Sum_probs=50.3

Q ss_pred             EEEEEEeCCcccHHHHHHHHHHHCCceEEEEEEEecCCeeEEEEEEeeCCCCCCCCCHHHHHHHHHHHHH
Q 028501           15 TIVQLSFGDRLGALIDTMNALKDLGLDVAKGTVNTEGSVKQTKFFITRLDTGRKVEDPDLLERIRLTIIN   84 (208)
Q Consensus        15 ~~v~v~~~DrpGLl~~i~~~L~~~gl~I~~a~i~t~~~~~~d~F~v~~~~~g~~~~~~~~~~~l~~~L~~   84 (208)
                      ..|++.|+||||+++.++++|+++|+||.+.+..+.++.+.-.+.+..+. +.   +   .+.+++.|..
T Consensus         3 ~vitv~g~DrpGiVa~vt~~l~~~g~NI~d~~q~~~~~~f~~~~~v~~~~-~~---~---~~~l~~~l~~   65 (83)
T d1zpva1           3 AIITVVGKDKSGIVAGVSGKIAELGLNIDDISQTVLDEYFTMMAVVSSDE-KQ---D---FTYLRNEFEA   65 (83)
T ss_dssp             EEEEEEESCCTTHHHHHHHHHHHTTCEEEEEEEEEETTEEEEEEEEEESS-CC---C---HHHHHHHHHH
T ss_pred             EEEEEEcCCCCCHHHHHHHHHHHCCCeEEEEEeEEeCCEEEEEEEEEEec-CC---C---HHHHHHHHHH
Confidence            57999999999999999999999999999999999888776556665442 21   1   3567777765

>d1u8sa2 d.58.18.5 (A:88-180) putative transcriptional repressor VC2159 {Vibrio cholerae [TaxId: 666]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: Glycine cleavage system transcriptional repressor
domain: putative transcriptional repressor VC2159
species: Vibrio cholerae [TaxId: 666]

Probab=98.57  E-value=1.1e-07  Score=64.83  Aligned_cols=39  Identities=21%  Similarity=0.320  Sum_probs=34.8

Q ss_pred             eEEEEEEecCcchHHHHHHHHHHhCCccEEEEEEEecCC
Q 028501          129 RSLLYIETADRPGLLVEIMKIIADVNVDVESAEIDTEGL  167 (208)
Q Consensus       129 ~~~i~v~~~Dr~GlL~~i~~~l~~~~i~I~~a~i~t~~~  167 (208)
                      .+.+.|.|+|||||+++||++|+++|+||..++..+...
T Consensus         6 tv~v~v~g~DrpGIV~~it~~la~~~~nI~~l~t~~~~a   44 (93)
T d1u8sa2           6 TVEVYVESDDKLGLTEKFTQFFAQRQIGMASLSAQTISK   44 (93)
T ss_dssp             EEEEEEEESCCTTHHHHHHHHHHHTTCCEEEEEEEEEC-
T ss_pred             EEEEEEEECCCCCHHHHHHHHHHHcCCCchhhhcccccc
Confidence            467888999999999999999999999999999887653

>d1u8sa2 d.58.18.5 (A:88-180) putative transcriptional repressor VC2159 {Vibrio cholerae [TaxId: 666]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: Glycine cleavage system transcriptional repressor
domain: putative transcriptional repressor VC2159
species: Vibrio cholerae [TaxId: 666]

Probab=98.26  E-value=4.5e-06  Score=56.54  Aligned_cols=38  Identities=16%  Similarity=0.109  Sum_probs=33.9

Q ss_pred             eEEEEEEeCCcccHHHHHHHHHHHCCceEEEEEEEecC
Q 028501           14 ATIVQLSFGDRLGALIDTMNALKDLGLDVAKGTVNTEG   51 (208)
Q Consensus        14 ~~~v~v~~~DrpGLl~~i~~~L~~~gl~I~~a~i~t~~   51 (208)
                      ...|.|.|+||||++++|+++|+++|+||.+.+-.+..
T Consensus         6 tv~v~v~g~DrpGIV~~it~~la~~~~nI~~l~t~~~~   43 (93)
T d1u8sa2           6 TVEVYVESDDKLGLTEKFTQFFAQRQIGMASLSAQTIS   43 (93)
T ss_dssp             EEEEEEEESCCTTHHHHHHHHHHHTTCCEEEEEEEEEC
T ss_pred             EEEEEEEECCCCCHHHHHHHHHHHcCCCchhhhccccc
Confidence            35789999999999999999999999999988876643

>d1ygya3 d.58.18.1 (A:452-529) Phosphoglycerate dehydrogenase, regulatory (C-terminal) domain {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: Phosphoglycerate dehydrogenase, regulatory (C-terminal) domain
domain: Phosphoglycerate dehydrogenase, regulatory (C-terminal) domain
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=98.21  E-value=5.9e-06  Score=54.17  Aligned_cols=61  Identities=18%  Similarity=0.297  Sum_probs=45.6

Q ss_pred             eEEEEEEecCcchHHHHHHHHHHhCCccEEEEEEEecC--CeEEEEEEEEeCCCCCChHHHHHHHH
Q 028501          129 RSLLYIETADRPGLLVEIMKIIADVNVDVESAEIDTEG--LVAKDKFHVSYGGAALNSSLSQVLVN  192 (208)
Q Consensus       129 ~~~i~v~~~Dr~GlL~~i~~~l~~~~i~I~~a~i~t~~--~~~~~~f~v~~~g~~~~~~~~~~l~~  192 (208)
                      .+.+-+.-.|+||+++.|+.+|+++|+||..+++.+..  +.+..++.+  ++ +++++..++|++
T Consensus         3 G~~L~i~~~D~PGvi~~I~~~l~~~~iNI~~m~~~~~~~g~~a~~vi~v--D~-~~~~~vl~~I~~   65 (78)
T d1ygya3           3 GINLIIHYVDRPGALGKIGTLLGTAGVNIQAAQLSEDAEGPGATILLRL--DQ-DVPDDVRTAIAA   65 (78)
T ss_dssp             SEEEEEEESCCTTHHHHHHHHHHHTTCCEEEEEEEECSSSSCEEEEEEE--SS-CCCHHHHHHHHH
T ss_pred             ceEEEEEeCCcCCHHHHHHHHHHhcCcChhhheeeecCCCCeEEEEEEc--CC-CccHHHHHHHHc
Confidence            36778889999999999999999999999999998754  334444444  33 445666666643

>d2f06a1 d.58.18.11 (A:71-141) Hypothetical protein BT0572 {Bacteroides thetaiotaomicron [TaxId: 818]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: BT0572-like
domain: Hypothetical protein BT0572
species: Bacteroides thetaiotaomicron [TaxId: 818]

Probab=98.13  E-value=4.6e-06  Score=53.74  Aligned_cols=46  Identities=20%  Similarity=0.197  Sum_probs=42.3

Q ss_pred             EEEEEecCcchHHHHHHHHHHhCCccEEEEEEEecCCeEEEEEEEE
Q 028501          131 LLYIETADRPGLLVEIMKIIADVNVDVESAEIDTEGLVAKDKFHVS  176 (208)
Q Consensus       131 ~i~v~~~Dr~GlL~~i~~~l~~~~i~I~~a~i~t~~~~~~~~f~v~  176 (208)
                      +|.|..+|+||-|++++++|++.|+||+++.+...++.+.-+|.++
T Consensus         1 ViaV~v~d~pG~L~~v~~~L~~~~InI~~~y~~~~~~~~~~vl~vd   46 (71)
T d2f06a1           1 VVGISCPNVPGALAKVLGFLSAEGVFIEYMYSFANNNVANVVIRPS   46 (71)
T ss_dssp             EEEEEEESSTTHHHHHHHHHHHTTCCEEEEEEEEETTEEEEEEEES
T ss_pred             CEEEEecCCccHHHHHHHHHHHCCCCEEEEEEEcCCCcEEEEEEEC
Confidence            5788899999999999999999999999999998888888888884

>d2f06a1 d.58.18.11 (A:71-141) Hypothetical protein BT0572 {Bacteroides thetaiotaomicron [TaxId: 818]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: BT0572-like
domain: Hypothetical protein BT0572
species: Bacteroides thetaiotaomicron [TaxId: 818]

Probab=98.10  E-value=1.1e-05  Score=51.94  Aligned_cols=46  Identities=17%  Similarity=0.129  Sum_probs=41.2

Q ss_pred             EEEEEeCCcccHHHHHHHHHHHCCceEEEEEEEecCCeeEEEEEEe
Q 028501           16 IVQLSFGDRLGALIDTMNALKDLGLDVAKGTVNTEGSVKQTKFFIT   61 (208)
Q Consensus        16 ~v~v~~~DrpGLl~~i~~~L~~~gl~I~~a~i~t~~~~~~d~F~v~   61 (208)
                      +|.|..+|+||-|++++++|.+.|+||.....+..+++.+-+|.+.
T Consensus         1 ViaV~v~d~pG~L~~v~~~L~~~~InI~~~y~~~~~~~~~~vl~vd   46 (71)
T d2f06a1           1 VVGISCPNVPGALAKVLGFLSAEGVFIEYMYSFANNNVANVVIRPS   46 (71)
T ss_dssp             EEEEEEESSTTHHHHHHHHHHHTTCCEEEEEEEEETTEEEEEEEES
T ss_pred             CEEEEecCCccHHHHHHHHHHHCCCCEEEEEEEcCCCcEEEEEEEC
Confidence            4788899999999999999999999999999999998877666664

>d2f06a2 d.58.18.11 (A:1-70) Hypothetical protein BT0572 {Bacteroides thetaiotaomicron [TaxId: 818]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: BT0572-like
domain: Hypothetical protein BT0572
species: Bacteroides thetaiotaomicron [TaxId: 818]

Probab=98.04  E-value=1.3e-05  Score=51.35  Aligned_cols=46  Identities=7%  Similarity=0.179  Sum_probs=40.7

Q ss_pred             EEEEEeCCcccHHHHHHHHHHHCCceEEEEEEEecCCeeEEEEEEe
Q 028501           16 IVQLSFGDRLGALIDTMNALKDLGLDVAKGTVNTEGSVKQTKFFIT   61 (208)
Q Consensus        16 ~v~v~~~DrpGLl~~i~~~L~~~gl~I~~a~i~t~~~~~~d~F~v~   61 (208)
                      ++.|+..|+||.|++++++|.+.|+||.+..+..+.+..+-.|.+.
T Consensus         5 QisV~~eNkpG~L~~v~~~~~~~~inI~sl~v~~t~~~~i~Riiv~   50 (70)
T d2f06a2           5 QLSIFLENKSGRLTEVTEVLAKENINLSALCIAENADFGILRGIVS   50 (70)
T ss_dssp             EEEEEECSSSSHHHHHHHHHHHTTCCEEEEEEEECSSCEEEEEEES
T ss_pred             EEEEEEeCCCcHHHHHHHHHHHCCCCEEEEEEeecCCCCEEEEEEC
Confidence            6899999999999999999999999999999998888766556554

>d1y7pa2 d.58.18.12 (A:2-78) Hypothetical protein AF1403, N-terminal domain {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: AF1403 N-terminal domain-like
domain: Hypothetical protein AF1403, N-terminal domain
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=98.04  E-value=7.7e-06  Score=53.44  Aligned_cols=50  Identities=20%  Similarity=0.159  Sum_probs=35.2

Q ss_pred             EEEEEEecCcchHHHHHHHHHHhCCccEEEEEEEecCC-e--EEEEEEEEeCC
Q 028501          130 SLLYIETADRPGLLVEIMKIIADVNVDVESAEIDTEGL-V--AKDKFHVSYGG  179 (208)
Q Consensus       130 ~~i~v~~~Dr~GlL~~i~~~l~~~~i~I~~a~i~t~~~-~--~~~~f~v~~~g  179 (208)
                      .-|.|.+.||||+|++|+.+|+++|+||.++...+..+ .  ....|++...+
T Consensus         2 ~~i~i~~~Dr~GlL~di~~~ia~~~~NI~~i~~~~~~~g~~~~~~~i~v~~~~   54 (77)
T d1y7pa2           2 RGLRIIAENKIGVLRDLTTIIAEEGGNITFAQTFLIKHGEHEGKALIYFEIEG   54 (77)
T ss_dssp             EEEEEEEECCTTHHHHHHHHCC----CEEEEEEEECCSSTTTTEEEEEEEECS
T ss_pred             eeEEEEEecCCChHHHHHHHHHHcCCCeEEEEeeccCCCeEEEEEEEEEEcCc
Confidence            35889999999999999999999999999999876432 3  33456665533

>d2f06a2 d.58.18.11 (A:1-70) Hypothetical protein BT0572 {Bacteroides thetaiotaomicron [TaxId: 818]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: BT0572-like
domain: Hypothetical protein BT0572
species: Bacteroides thetaiotaomicron [TaxId: 818]

Probab=97.93  E-value=1.8e-05  Score=50.69  Aligned_cols=46  Identities=22%  Similarity=0.231  Sum_probs=40.8

Q ss_pred             EEEEEecCcchHHHHHHHHHHhCCccEEEEEEEecCCeEEEEEEEE
Q 028501          131 LLYIETADRPGLLVEIMKIIADVNVDVESAEIDTEGLVAKDKFHVS  176 (208)
Q Consensus       131 ~i~v~~~Dr~GlL~~i~~~l~~~~i~I~~a~i~t~~~~~~~~f~v~  176 (208)
                      .++|...||||.|++++..|++.|+||.+..+....+...-.|.++
T Consensus         5 QisV~~eNkpG~L~~v~~~~~~~~inI~sl~v~~t~~~~i~Riiv~   50 (70)
T d2f06a2           5 QLSIFLENKSGRLTEVTEVLAKENINLSALCIAENADFGILRGIVS   50 (70)
T ss_dssp             EEEEEECSSSSHHHHHHHHHHHTTCCEEEEEEEECSSCEEEEEEES
T ss_pred             EEEEEEeCCCcHHHHHHHHHHHCCCCEEEEEEeecCCCCEEEEEEC
Confidence            5889999999999999999999999999999988777776667653

>d1y7pa2 d.58.18.12 (A:2-78) Hypothetical protein AF1403, N-terminal domain {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: AF1403 N-terminal domain-like
domain: Hypothetical protein AF1403, N-terminal domain
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=97.78  E-value=2.3e-05  Score=51.09  Aligned_cols=39  Identities=10%  Similarity=0.095  Sum_probs=30.7

Q ss_pred             EEEEEEeCCcccHHHHHHHHHHHCCceEEEEEEEecCCe
Q 028501           15 TIVQLSFGDRLGALIDTMNALKDLGLDVAKGTVNTEGSV   53 (208)
Q Consensus        15 ~~v~v~~~DrpGLl~~i~~~L~~~gl~I~~a~i~t~~~~   53 (208)
                      .-|.|.+.||||+|++|+.++++.|.||......+..++
T Consensus         2 ~~i~i~~~Dr~GlL~di~~~ia~~~~NI~~i~~~~~~~g   40 (77)
T d1y7pa2           2 RGLRIIAENKIGVLRDLTTIIAEEGGNITFAQTFLIKHG   40 (77)
T ss_dssp             EEEEEEEECCTTHHHHHHHHCC----CEEEEEEEECCSS
T ss_pred             eeEEEEEecCCChHHHHHHHHHHcCCCeEEEEeeccCCC
Confidence            358899999999999999999999999999998876553

>d1sc6a3 d.58.18.1 (A:327-410) Phosphoglycerate dehydrogenase, regulatory (C-terminal) domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: Phosphoglycerate dehydrogenase, regulatory (C-terminal) domain
domain: Phosphoglycerate dehydrogenase, regulatory (C-terminal) domain
species: Escherichia coli [TaxId: 562]

Probab=97.77  E-value=0.00018  Score=47.30  Aligned_cols=47  Identities=21%  Similarity=0.343  Sum_probs=40.0

Q ss_pred             EEEEEEecCcchHHHHHHHHHHhCCccEEEEEEEecCCeEEEEEEEE
Q 028501          130 SLLYIETADRPGLLVEIMKIIADVNVDVESAEIDTEGLVAKDKFHVS  176 (208)
Q Consensus       130 ~~i~v~~~Dr~GlL~~i~~~l~~~~i~I~~a~i~t~~~~~~~~f~v~  176 (208)
                      ..+.+.-.|+||+|++|+.+|+++|+||.+....+.++....+..+.
T Consensus        12 ~rl~i~~~d~PGvla~I~~~l~~~~iNI~~~~~~~~~~~~~a~~~i~   58 (84)
T d1sc6a3          12 RRLMHIHENRPGVLTALNKIFAEQGVNIAAQYLQTSAQMGYVVIDIE   58 (84)
T ss_dssp             EEEEEEEESCTTHHHHHHHHHHHTTCEEEEEEEEECSSEEEEEEEEE
T ss_pred             eEEEEEeCCcCCHHHHHHHHHHHcCCCHHHhccccCCCCcEEEEEEE
Confidence            56777889999999999999999999999999998777666555553

>d2f1fa1 d.58.18.6 (A:2-77) Acetolactate synthase small subunit, IlvH {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: IlvH-like
domain: Acetolactate synthase small subunit, IlvH
species: Escherichia coli [TaxId: 562]

Probab=97.74  E-value=6.7e-05  Score=48.63  Aligned_cols=63  Identities=19%  Similarity=0.326  Sum_probs=48.4

Q ss_pred             EEEEEeCCcccHHHHHHHHHHHCCceEEEEEEEecCCeeEEEEEEeeCCCCCCCCCHHHHHHHHHHHHH
Q 028501           16 IVQLSFGDRLGALIDTMNALKDLGLDVAKGTVNTEGSVKQTKFFITRLDTGRKVEDPDLLERIRLTIIN   84 (208)
Q Consensus        16 ~v~v~~~DrpGLl~~i~~~L~~~gl~I~~a~i~t~~~~~~d~F~v~~~~~g~~~~~~~~~~~l~~~L~~   84 (208)
                      .+.+...|+||.|+++++.|+..|+||.+-.+.-+.+.-+-.|.+...  |.    ++.++++.+.|.+
T Consensus         3 tlsv~v~N~~GVL~RisglF~rRg~NI~Sl~v~~te~~~iSR~tivv~--~~----~~~i~qi~kQL~K   65 (76)
T d2f1fa1           3 ILSVLLENESGALSRVIGLFSQRGYNIESLTVAPTDDPTLSRMTIQTV--GD----EKVLEQIEKQLHK   65 (76)
T ss_dssp             EEEEEEECCTTHHHHHHHHHHTTTCCCSEEEEEECSCSSEEEEEEEEE--SC----HHHHHHHHHHHHH
T ss_pred             EEEEEEECCCcHHHHHHHHHHhcCcceEEEEEcccCCCCeeEEEEEEE--CC----HHHHHHHHHHHhC
Confidence            578899999999999999999999999999988666643334544433  33    3567777777776

>d2fgca2 d.58.18.6 (A:27-104) Acetolactate synthase small subunit, IlvH {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: IlvH-like
domain: Acetolactate synthase small subunit, IlvH
species: Thermotoga maritima [TaxId: 2336]

Probab=97.74  E-value=7.7e-05  Score=48.56  Aligned_cols=64  Identities=16%  Similarity=0.267  Sum_probs=47.1

Q ss_pred             EEEEEEeCCcccHHHHHHHHHHHCCceEEEEEEEecCCeeEEEEEEeeCCCCCCCCCHHHHHHHHHHHHH
Q 028501           15 TIVQLSFGDRLGALIDTMNALKDLGLDVAKGTVNTEGSVKQTKFFITRLDTGRKVEDPDLLERIRLTIIN   84 (208)
Q Consensus        15 ~~v~v~~~DrpGLl~~i~~~L~~~gl~I~~a~i~t~~~~~~d~F~v~~~~~g~~~~~~~~~~~l~~~L~~   84 (208)
                      ..+.+...|+||.|+++++.|+..|+||.+-.+..+.+.-+-.+.+.-.  |..    +..+++.+.|++
T Consensus         4 ~tisvlv~n~pGvL~Ri~~lF~rRg~NI~SL~v~~te~~~iSR~tivv~--g~~----~~i~qi~kQl~K   67 (78)
T d2fgca2           4 HLVSMLVHNKPGVMRKVANLFARRGFNISSITVGESETPGLSRLVIMVK--GDD----KTIEQIEKQAYK   67 (78)
T ss_dssp             EEEEEEEECCTTHHHHHHHHHHTTTCEEEEEEEEECSSTTEEEEEEEEE--ECT----THHHHHHHHHTT
T ss_pred             EEEEEEEeCCCcHHHHHHHHHhhCCcceEEEEEeecCCCCeEEEEEEEE--cCH----HHHHHHHHHHhC
Confidence            4788999999999999999999999999999988777643333444332  321    445666666555

>d2fgca2 d.58.18.6 (A:27-104) Acetolactate synthase small subunit, IlvH {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: IlvH-like
domain: Acetolactate synthase small subunit, IlvH
species: Thermotoga maritima [TaxId: 2336]

Probab=97.71  E-value=7.5e-05  Score=48.62  Aligned_cols=47  Identities=11%  Similarity=0.316  Sum_probs=39.1

Q ss_pred             eEEEEEEecCcchHHHHHHHHHHhCCccEEEEEEEecCCeEEEEEEE
Q 028501          129 RSLLYIETADRPGLLVEIMKIIADVNVDVESAEIDTEGLVAKDKFHV  175 (208)
Q Consensus       129 ~~~i~v~~~Dr~GlL~~i~~~l~~~~i~I~~a~i~t~~~~~~~~f~v  175 (208)
                      .+.+.+...|+||+|+.|+..|+..|+||.++.+....+.....|.+
T Consensus         3 ~~tisvlv~n~pGvL~Ri~~lF~rRg~NI~SL~v~~te~~~iSR~ti   49 (78)
T d2fgca2           3 EHLVSMLVHNKPGVMRKVANLFARRGFNISSITVGESETPGLSRLVI   49 (78)
T ss_dssp             EEEEEEEEECCTTHHHHHHHHHHTTTCEEEEEEEEECSSTTEEEEEE
T ss_pred             eEEEEEEEeCCCcHHHHHHHHHhhCCcceEEEEEeecCCCCeEEEEE
Confidence            36789999999999999999999999999999998766554433333

>d2f1fa1 d.58.18.6 (A:2-77) Acetolactate synthase small subunit, IlvH {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: IlvH-like
domain: Acetolactate synthase small subunit, IlvH
species: Escherichia coli [TaxId: 562]

Probab=97.69  E-value=0.00012  Score=47.36  Aligned_cols=65  Identities=11%  Similarity=0.204  Sum_probs=47.9

Q ss_pred             EEEEEEecCcchHHHHHHHHHHhCCccEEEEEEEecCCeEEEEEEEEeCCCCCChHHHHHHHHHHHHH
Q 028501          130 SLLYIETADRPGLLVEIMKIIADVNVDVESAEIDTEGLVAKDKFHVSYGGAALNSSLSQVLVNCLRYY  197 (208)
Q Consensus       130 ~~i~v~~~Dr~GlL~~i~~~l~~~~i~I~~a~i~t~~~~~~~~f~v~~~g~~~~~~~~~~l~~~l~~~  197 (208)
                      ..+.+...|+||+|+.|+..|+..|+||.++.+..........|.+.-.|.   ++..+++...|...
T Consensus         2 htlsv~v~N~~GVL~RisglF~rRg~NI~Sl~v~~te~~~iSR~tivv~~~---~~~i~qi~kQL~Kl   66 (76)
T d2f1fa1           2 RILSVLLENESGALSRVIGLFSQRGYNIESLTVAPTDDPTLSRMTIQTVGD---EKVLEQIEKQLHKL   66 (76)
T ss_dssp             EEEEEEEECCTTHHHHHHHHHHTTTCCCSEEEEEECSCSSEEEEEEEEESC---HHHHHHHHHHHHHS
T ss_pred             EEEEEEEECCCcHHHHHHHHHHhcCcceEEEEEcccCCCCeeEEEEEEECC---HHHHHHHHHHHhCC
Confidence            468889999999999999999999999999999876655444455543342   33445666665543

>d1ygya3 d.58.18.1 (A:452-529) Phosphoglycerate dehydrogenase, regulatory (C-terminal) domain {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: Phosphoglycerate dehydrogenase, regulatory (C-terminal) domain
domain: Phosphoglycerate dehydrogenase, regulatory (C-terminal) domain
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=97.69  E-value=0.00027  Score=45.86  Aligned_cols=39  Identities=18%  Similarity=0.292  Sum_probs=35.0

Q ss_pred             eEEEEEEeCCcccHHHHHHHHHHHCCceEEEEEEEecCC
Q 028501           14 ATIVQLSFGDRLGALIDTMNALKDLGLDVAKGTVNTEGS   52 (208)
Q Consensus        14 ~~~v~v~~~DrpGLl~~i~~~L~~~gl~I~~a~i~t~~~   52 (208)
                      ...+.+.-.|+||.+++++.+|.+.|+||...++.+...
T Consensus         3 G~~L~i~~~D~PGvi~~I~~~l~~~~iNI~~m~~~~~~~   41 (78)
T d1ygya3           3 GINLIIHYVDRPGALGKIGTLLGTAGVNIQAAQLSEDAE   41 (78)
T ss_dssp             SEEEEEEESCCTTHHHHHHHHHHHTTCCEEEEEEEECSS
T ss_pred             ceEEEEEeCCcCCHHHHHHHHHHhcCcChhhheeeecCC
Confidence            357888899999999999999999999999999987654

>d2pc6a2 d.58.18.6 (A:1-77) Acetolactate synthase small subunit, IlvH {Nitrosomonas europaea [TaxId: 915]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: IlvH-like
domain: Acetolactate synthase small subunit, IlvH
species: Nitrosomonas europaea [TaxId: 915]

Probab=97.64  E-value=9.6e-05  Score=47.98  Aligned_cols=65  Identities=9%  Similarity=0.204  Sum_probs=46.1

Q ss_pred             EEEEEEecCcchHHHHHHHHHHhCCccEEEEEEEecCCeEEEEEEEEeCCCCCChHHHHHHHHHHHHH
Q 028501          130 SLLYIETADRPGLLVEIMKIIADVNVDVESAEIDTEGLVAKDKFHVSYGGAALNSSLSQVLVNCLRYY  197 (208)
Q Consensus       130 ~~i~v~~~Dr~GlL~~i~~~l~~~~i~I~~a~i~t~~~~~~~~f~v~~~g~~~~~~~~~~l~~~l~~~  197 (208)
                      ..+.+...|+||+|+.|+..|+..|+||.++.+..........+.+.-.|.   ++..+++...|...
T Consensus         3 ~tisv~veN~pGvL~Ris~lF~rRg~NI~Sltv~~te~~~iSRmtivv~~~---~~~i~qi~kQL~Kl   67 (77)
T d2pc6a2           3 HIISLLMENEAGALSRVAGLFSARGYNIESLSVAPTEDPTLSRMTLVTNGP---DEIVEQITKQLNKL   67 (77)
T ss_dssp             EEEEEEEECSTTHHHHHHHHHHHHTCCCCEEEEEECSSTTEEEEEEEEEEC---HHHHHHHHHHHHHS
T ss_pred             EEEEEEEECCccHHHHHHHHHhccCcceEEEEEeccCCCCeEEEEEEEECC---HHHHHHHHHHHhCC
Confidence            578899999999999999999999999999999875544333333332232   33445566655543

>d2pc6a2 d.58.18.6 (A:1-77) Acetolactate synthase small subunit, IlvH {Nitrosomonas europaea [TaxId: 915]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: IlvH-like
domain: Acetolactate synthase small subunit, IlvH
species: Nitrosomonas europaea [TaxId: 915]

Probab=97.62  E-value=8.3e-05  Score=48.29  Aligned_cols=64  Identities=16%  Similarity=0.271  Sum_probs=47.5

Q ss_pred             EEEEEEeCCcccHHHHHHHHHHHCCceEEEEEEEecCCeeEEEEEEeeCCCCCCCCCHHHHHHHHHHHHH
Q 028501           15 TIVQLSFGDRLGALIDTMNALKDLGLDVAKGTVNTEGSVKQTKFFITRLDTGRKVEDPDLLERIRLTIIN   84 (208)
Q Consensus        15 ~~v~v~~~DrpGLl~~i~~~L~~~gl~I~~a~i~t~~~~~~d~F~v~~~~~g~~~~~~~~~~~l~~~L~~   84 (208)
                      ..+.+...|+||.|+++++.|+..|+||.+-.+.-+.+.-+-.+.+.-.  |.    ++.++++.+.|.+
T Consensus         3 ~tisv~veN~pGvL~Ris~lF~rRg~NI~Sltv~~te~~~iSRmtivv~--~~----~~~i~qi~kQL~K   66 (77)
T d2pc6a2           3 HIISLLMENEAGALSRVAGLFSARGYNIESLSVAPTEDPTLSRMTLVTN--GP----DEIVEQITKQLNK   66 (77)
T ss_dssp             EEEEEEEECSTTHHHHHHHHHHHHTCCCCEEEEEECSSTTEEEEEEEEE--EC----HHHHHHHHHHHHH
T ss_pred             EEEEEEEECCccHHHHHHHHHhccCcceEEEEEeccCCCCeEEEEEEEE--CC----HHHHHHHHHHHhC
Confidence            3678999999999999999999999999999988666532223333322  32    3566777777776

>d1sc6a3 d.58.18.1 (A:327-410) Phosphoglycerate dehydrogenase, regulatory (C-terminal) domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: Phosphoglycerate dehydrogenase, regulatory (C-terminal) domain
domain: Phosphoglycerate dehydrogenase, regulatory (C-terminal) domain
species: Escherichia coli [TaxId: 562]

Probab=97.53  E-value=0.0005  Score=45.12  Aligned_cols=43  Identities=14%  Similarity=0.198  Sum_probs=38.1

Q ss_pred             CeEEEEEEeCCcccHHHHHHHHHHHCCceEEEEEEEecCCeeE
Q 028501           13 DATIVQLSFGDRLGALIDTMNALKDLGLDVAKGTVNTEGSVKQ   55 (208)
Q Consensus        13 ~~~~v~v~~~DrpGLl~~i~~~L~~~gl~I~~a~i~t~~~~~~   55 (208)
                      +...+.+.-.|+||.+++|+++|++.|+||.+....+.+++..
T Consensus        10 ~~~rl~i~~~d~PGvla~I~~~l~~~~iNI~~~~~~~~~~~~~   52 (84)
T d1sc6a3          10 GGRRLMHIHENRPGVLTALNKIFAEQGVNIAAQYLQTSAQMGY   52 (84)
T ss_dssp             SSEEEEEEEESCTTHHHHHHHHHHHTTCEEEEEEEEECSSEEE
T ss_pred             CCeEEEEEeCCcCCHHHHHHHHHHHcCCCHHHhccccCCCCcE
Confidence            4468888899999999999999999999999999888887654

>d2qmwa2 d.58.18.3 (A:185-264) Prephenate dehydratase C-terminal domain {Staphylococcus aureus [TaxId: 1280]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: Phenylalanine metabolism regulatory domain
domain: Prephenate dehydratase C-terminal domain
species: Staphylococcus aureus [TaxId: 1280]

Probab=97.44  E-value=0.00031  Score=45.80  Aligned_cols=50  Identities=24%  Similarity=0.308  Sum_probs=41.4

Q ss_pred             EEEEecCcchHHHHHHHHHHhCCccEEEEEEEecCCeEEE-EEEEEeCCCC
Q 028501          132 LYIETADRPGLLVEIMKIIADVNVDVESAEIDTEGLVAKD-KFHVSYGGAA  181 (208)
Q Consensus       132 i~v~~~Dr~GlL~~i~~~l~~~~i~I~~a~i~t~~~~~~~-~f~v~~~g~~  181 (208)
                      +-+.-.|+||-|+++...|+++|+|+.++......+..+. .|+++-+|..
T Consensus         5 ~i~~~~d~pGaL~~vL~~F~~~~INLt~IeSRP~~~~~~~Y~F~id~~g~~   55 (80)
T d2qmwa2           5 LITPMHDKPGLLASVLNTFALFNINLSWIESRPLKTQLGMYRFFVQADSAI   55 (80)
T ss_dssp             EEEESSCCTTHHHHHHHHHHTTTCCEEEEEEEECSSSTTCEEEEEEESCCS
T ss_pred             EEEeCCCCCCHHHHHHHHHHHCCCCEEEEEeeecCCCCceEEEEEEEecCC
Confidence            3445579999999999999999999999999887776544 6888877764

>d1phza1 d.58.18.3 (A:19-115) Phenylalanine hydroxylase N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: Phenylalanine metabolism regulatory domain
domain: Phenylalanine hydroxylase N-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=97.36  E-value=0.00011  Score=49.81  Aligned_cols=67  Identities=12%  Similarity=0.269  Sum_probs=51.3

Q ss_pred             CCeEEEEEEecCcchHHHHHHHHHHhCCccEEEEEEEecCCeEEE-EEEEEeCCCCCChHHHHHHHHHHH
Q 028501          127 PKRSLLYIETADRPGLLVEIMKIIADVNVDVESAEIDTEGLVAKD-KFHVSYGGAALNSSLSQVLVNCLR  195 (208)
Q Consensus       127 ~~~~~i~v~~~Dr~GlL~~i~~~l~~~~i~I~~a~i~t~~~~~~~-~f~v~~~g~~~~~~~~~~l~~~l~  195 (208)
                      .+.+.|-+...|+||-|+++...|+++|||+.++..-...+..+. .|||+-+|+.  ++..+.+.+.|.
T Consensus        14 ~~ktSl~f~~~~~pGaL~~vL~~f~~~~INLt~IeSRP~~~~~~~Y~F~id~eg~~--~~~i~~~l~~L~   81 (97)
T d1phza1          14 NGAISLIFSLKEEVGALAKVLRLFEENDINLTHIESRPSRLNKDEYEFFTYLDKRT--KPVLGSIIKSLR   81 (97)
T ss_dssp             SCCEEEEEEEECCTTHHHHHHHHHHTTTCCTTSEEEEECSSCTTEEEEEECBCGGG--HHHHHHHHHHHH
T ss_pred             CCcEEEEEEeCCCCCHHHHHHHHHHHCCCCEEEEEeeccCCCCceEEEEEEcccCC--hHHHHHHHHHHH
Confidence            446888888999999999999999999999999999887666444 6888767763  443344444444

>d1phza1 d.58.18.3 (A:19-115) Phenylalanine hydroxylase N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: Phenylalanine metabolism regulatory domain
domain: Phenylalanine hydroxylase N-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=94.21  E-value=0.083  Score=34.98  Aligned_cols=56  Identities=14%  Similarity=0.232  Sum_probs=39.4

Q ss_pred             CCCCeEEEEEEeCCcccHHHHHHHHHHHCCceEEEEEEEecCC-eeEEEEEEeeCCCCC
Q 028501           10 SNSDATIVQLSFGDRLGALIDTMNALKDLGLDVAKGTVNTEGS-VKQTKFFITRLDTGR   67 (208)
Q Consensus        10 ~~~~~~~v~v~~~DrpGLl~~i~~~L~~~gl~I~~a~i~t~~~-~~~d~F~v~~~~~g~   67 (208)
                      +..+.+.|.+..+|+||-|+++...|+++|+|+..-.-.-..+ ..--.|+|.-.  |.
T Consensus        12 ~~~~ktSl~f~~~~~pGaL~~vL~~f~~~~INLt~IeSRP~~~~~~~Y~F~id~e--g~   68 (97)
T d1phza1          12 NQNGAISLIFSLKEEVGALAKVLRLFEENDINLTHIESRPSRLNKDEYEFFTYLD--KR   68 (97)
T ss_dssp             CSSCCEEEEEEEECCTTHHHHHHHHHHTTTCCTTSEEEEECSSCTTEEEEEECBC--GG
T ss_pred             CCCCcEEEEEEeCCCCCHHHHHHHHHHHCCCCEEEEEeeccCCCCceEEEEEEcc--cC
Confidence            3445677888889999999999999999999998433332322 12234888643  65

>d2qmwa2 d.58.18.3 (A:185-264) Prephenate dehydratase C-terminal domain {Staphylococcus aureus [TaxId: 1280]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: Phenylalanine metabolism regulatory domain
domain: Prephenate dehydratase C-terminal domain
species: Staphylococcus aureus [TaxId: 1280]

Probab=94.16  E-value=0.31  Score=30.81  Aligned_cols=48  Identities=13%  Similarity=0.176  Sum_probs=33.4

Q ss_pred             EEEeCCcccHHHHHHHHHHHCCceEEEEEEEecCCe-eEEEEEEeeCCCCC
Q 028501           18 QLSFGDRLGALIDTMNALKDLGLDVAKGTVNTEGSV-KQTKFFITRLDTGR   67 (208)
Q Consensus        18 ~v~~~DrpGLl~~i~~~L~~~gl~I~~a~i~t~~~~-~~d~F~v~~~~~g~   67 (208)
                      .+...|+||-|+++.+.|+++|+|+..-.-.-..+. .--.|+|.-.  |.
T Consensus         6 i~~~~d~pGaL~~vL~~F~~~~INLt~IeSRP~~~~~~~Y~F~id~~--g~   54 (80)
T d2qmwa2           6 ITPMHDKPGLLASVLNTFALFNINLSWIESRPLKTQLGMYRFFVQAD--SA   54 (80)
T ss_dssp             EEESSCCTTHHHHHHHHHHTTTCCEEEEEEEECSSSTTCEEEEEEES--CC
T ss_pred             EEeCCCCCCHHHHHHHHHHHCCCCEEEEEeeecCCCCceEEEEEEEe--cC
Confidence            333579999999999999999999994433333332 2234888654  65

>d2hmfa3 d.58.18.10 (A:304-403) Aspartokinase {Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: Aspartokinase allosteric domain-like
domain: Aspartokinase
species: Methanococcus jannaschii [TaxId: 2190]

Probab=92.72  E-value=0.27  Score=32.44  Aligned_cols=63  Identities=8%  Similarity=0.097  Sum_probs=42.5

Q ss_pred             CeEEEEEEe---CCcccHHHHHHHHHHHCCceEEEEEEEecCCeeEEEEEEeeCCCCCCCCCHHHHHHHHHHHHHhhc
Q 028501           13 DATIVQLSF---GDRLGALIDTMNALKDLGLDVAKGTVNTEGSVKQTKFFITRLDTGRKVEDPDLLERIRLTIINNLL   87 (208)
Q Consensus        13 ~~~~v~v~~---~DrpGLl~~i~~~L~~~gl~I~~a~i~t~~~~~~d~F~v~~~~~g~~~~~~~~~~~l~~~L~~~l~   87 (208)
                      +...|++.+   +++||+.+++..+|++.|+||.--...+..-.+  .|.|...+          .++....|.+++.
T Consensus        14 nva~IsivG~~m~~~~Gi~arif~~La~~~InV~mIsQ~~Se~~I--sf~V~~~d----------~~~a~~~L~~~f~   79 (100)
T d2hmfa3          14 NVALINIFGAGMVGVSGTAARIFKALGEEEVNVILISQGSSETNI--SLVVSEED----------VDKALKALKREFG   79 (100)
T ss_dssp             EEEEEEEEECSSSCHHHHHHHHHHHHHHTTCCEEEEEECCTTCCE--EEEECSTT----------HHHHHHHHHHHHC
T ss_pred             CEEEEEEECCCCCCCcchHHHHHHHHHHcCCCHHHeeccCCcceE--EEEEeHHH----------HHHHHHHHHHHHH
Confidence            567899987   799999999999999999999944332322222  36665332          2444455666553

>d2cdqa2 d.58.18.10 (A:329-419) Aspartokinase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: Aspartokinase allosteric domain-like
domain: Aspartokinase
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=92.69  E-value=0.12  Score=33.73  Aligned_cols=34  Identities=18%  Similarity=0.454  Sum_probs=30.6

Q ss_pred             eEEEEEEec---CcchHHHHHHHHHHhCCccEEEEEE
Q 028501          129 RSLLYIETA---DRPGLLVEIMKIIADVNVDVESAEI  162 (208)
Q Consensus       129 ~~~i~v~~~---Dr~GlL~~i~~~l~~~~i~I~~a~i  162 (208)
                      .+.+.+.|.   ++||+++.|..+|+++|+||.-...
T Consensus        13 ia~i~v~g~~m~~~~G~~a~if~~La~~~Inv~~Is~   49 (91)
T d2cdqa2          13 VTMLDIASTRMLGQVGFLAKVFSIFEELGISVDVVAT   49 (91)
T ss_dssp             EEEEEEECGGGTTCTTHHHHHHHHHHHTTCCEEEEEE
T ss_pred             EEEEEEEeCCCCCCccHHHHHHHHHHHcCCcEEEEEe
Confidence            478899875   9999999999999999999998874

>d2cdqa2 d.58.18.10 (A:329-419) Aspartokinase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: Aspartokinase allosteric domain-like
domain: Aspartokinase
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=92.03  E-value=0.56  Score=30.24  Aligned_cols=48  Identities=15%  Similarity=0.243  Sum_probs=36.3

Q ss_pred             CCeEEEEEEe---CCcccHHHHHHHHHHHCCceEEEEEEEecCCeeEEEEEEeeC
Q 028501           12 SDATIVQLSF---GDRLGALIDTMNALKDLGLDVAKGTVNTEGSVKQTKFFITRL   63 (208)
Q Consensus        12 ~~~~~v~v~~---~DrpGLl~~i~~~L~~~gl~I~~a~i~t~~~~~~d~F~v~~~   63 (208)
                      ++.+.|+|.+   .++||+++++..+|++.|+||.--  ++.....  .|.+...
T Consensus        11 ~~ia~i~v~g~~m~~~~G~~a~if~~La~~~Inv~~I--s~Se~~i--s~~v~~~   61 (91)
T d2cdqa2          11 RNVTMLDIASTRMLGQVGFLAKVFSIFEELGISVDVV--ATSEVSI--SLTLDPS   61 (91)
T ss_dssp             EEEEEEEEECGGGTTCTTHHHHHHHHHHHTTCCEEEE--EEETTEE--EEEECCG
T ss_pred             CCEEEEEEEeCCCCCCccHHHHHHHHHHHcCCcEEEE--EecCCeE--EEEEchh
Confidence            3568899987   499999999999999999999944  3433333  3667544

>d2hmfa3 d.58.18.10 (A:304-403) Aspartokinase {Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: Aspartokinase allosteric domain-like
domain: Aspartokinase
species: Methanococcus jannaschii [TaxId: 2190]

Probab=90.28  E-value=0.23  Score=32.84  Aligned_cols=46  Identities=20%  Similarity=0.188  Sum_probs=36.0

Q ss_pred             eEEEEEEe---cCcchHHHHHHHHHHhCCccEEEEEEEecCCeEEEEEEEE
Q 028501          129 RSLLYIET---ADRPGLLVEIMKIIADVNVDVESAEIDTEGLVAKDKFHVS  176 (208)
Q Consensus       129 ~~~i~v~~---~Dr~GlL~~i~~~l~~~~i~I~~a~i~t~~~~~~~~f~v~  176 (208)
                      ...+.+.|   .++||+++.|..+|++.|+||.-....+..  ..-.|.|.
T Consensus        15 va~IsivG~~m~~~~Gi~arif~~La~~~InV~mIsQ~~Se--~~Isf~V~   63 (100)
T d2hmfa3          15 VALINIFGAGMVGVSGTAARIFKALGEEEVNVILISQGSSE--TNISLVVS   63 (100)
T ss_dssp             EEEEEEEECSSSCHHHHHHHHHHHHHHTTCCEEEEEECCTT--CCEEEEEC
T ss_pred             EEEEEEECCCCCCCcchHHHHHHHHHHcCCCHHHeeccCCc--ceEEEEEe
Confidence            47888988   699999999999999999999987754422  23347774

>d2hmfa2 d.58.18.10 (A:404-470) Aspartokinase {Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: Aspartokinase allosteric domain-like
domain: Aspartokinase
species: Methanococcus jannaschii [TaxId: 2190]

Probab=89.99  E-value=1.1  Score=27.05  Aligned_cols=47  Identities=11%  Similarity=0.119  Sum_probs=33.1

Q ss_pred             EEEEEEe---CCcccHHHHHHHHHHHCCceEEEEEEEecCCeeEEEEEEeeC
Q 028501           15 TIVQLSF---GDRLGALIDTMNALKDLGLDVAKGTVNTEGSVKQTKFFITRL   63 (208)
Q Consensus        15 ~~v~v~~---~DrpGLl~~i~~~L~~~gl~I~~a~i~t~~~~~~d~F~v~~~   63 (208)
                      ..|++.+   .++||+.+++..+|.+.|+||.--...+.  ..--.|.|...
T Consensus         2 a~vsvvG~gm~~~~gi~arif~~L~~~~InV~mIsq~~S--e~~Is~~V~~~   51 (67)
T d2hmfa2           2 CVISVVGAGMRGAKGIAGKIFTAVSESGANIKMIAQGSS--EVNISFVIDEK   51 (67)
T ss_dssp             EEEEEECTTTTTCTTHHHHHHHHHHHTTCCCCEEEESSC--SSEEEEEEEGG
T ss_pred             EEEEEEeCCCCCCccHHHHHHHHHHHcCCChHHeeecCc--cceEEEEEeHH
Confidence            3577776   68999999999999999999983332222  22224777644

>d2hmfa2 d.58.18.10 (A:404-470) Aspartokinase {Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: Aspartokinase allosteric domain-like
domain: Aspartokinase
species: Methanococcus jannaschii [TaxId: 2190]

Probab=89.77  E-value=0.18  Score=30.78  Aligned_cols=44  Identities=7%  Similarity=0.203  Sum_probs=33.3

Q ss_pred             EEEEEe---cCcchHHHHHHHHHHhCCccEEEEEEEecCCeEEEEEEEE
Q 028501          131 LLYIET---ADRPGLLVEIMKIIADVNVDVESAEIDTEGLVAKDKFHVS  176 (208)
Q Consensus       131 ~i~v~~---~Dr~GlL~~i~~~l~~~~i~I~~a~i~t~~~~~~~~f~v~  176 (208)
                      .+.+.|   .++||+.+++..+|++.|+||.-+...+.  ...-.|.|.
T Consensus         3 ~vsvvG~gm~~~~gi~arif~~L~~~~InV~mIsq~~S--e~~Is~~V~   49 (67)
T d2hmfa2           3 VISVVGAGMRGAKGIAGKIFTAVSESGANIKMIAQGSS--EVNISFVID   49 (67)
T ss_dssp             EEEEECTTTTTCTTHHHHHHHHHHHTTCCCCEEEESSC--SSEEEEEEE
T ss_pred             EEEEEeCCCCCCccHHHHHHHHHHHcCCChHHeeecCc--cceEEEEEe
Confidence            566776   48999999999999999999987775432  233457775

>d2cdqa3 d.58.18.10 (A:420-494) Aspartokinase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: Aspartokinase allosteric domain-like
domain: Aspartokinase
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=82.01  E-value=0.5  Score=29.37  Aligned_cols=44  Identities=11%  Similarity=0.137  Sum_probs=32.3

Q ss_pred             EEEEEe--cCcchHHHHHHHHHHhCCccEEEEEEEecCCeEEEEEEEE
Q 028501          131 LLYIET--ADRPGLLVEIMKIIADVNVDVESAEIDTEGLVAKDKFHVS  176 (208)
Q Consensus       131 ~i~v~~--~Dr~GlL~~i~~~l~~~~i~I~~a~i~t~~~~~~~~f~v~  176 (208)
                      .|.+.|  .++||+++++..+|++.|+||.-+.-.+  ....-.|.|.
T Consensus         3 ~IsvVG~~~~~~Giaarif~aL~~~~InV~mIsqg~--se~~Is~vV~   48 (75)
T d2cdqa3           3 IISLIGNVQHSSLILERAFHVLYTKGVNVQMISQGA--SKVNISFIVN   48 (75)
T ss_dssp             EEEEEECGGGHHHHHHHHHHHHHHHTCCCSEEEECT--TCSEEEEEEE
T ss_pred             EEEEECCCCCChhHHHHHHHHHHHcCCceEEEEcCc--cceEEEEEEe
Confidence            455555  5789999999999999999998766443  2234457774