Citrus Sinensis ID: 028504

---

Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------21
Protein Sequence
MQVLNKKCDAFYRLTRPYSCVSIIAALLSVSLLPLQSPADFTPKLIIEAFKCMVPAIMMNNYANAINQLADVHIDKVNKPYLPLACGDFSMGEGLAITIASPLMAVAMGIMLRSPPLVIGFIIWCIVGGAYSIDLPPLLRWKGNPLMAAVTIISMNGLLLLFPFFIHFQKIVLGNPVAFTKPVLFTAAYMVIWNAAIAFVKVTNSEIE
Secondary Structure (PSIPRED)
cHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHcccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHcccccccc
Secondary Structure Prediction (SSPRO)
cHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHcEEEEEHccccccEEccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHcccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHcccccc
Coil and Loop (DISEMBL)
mqvlnkkcdafyrltrpySCVSIIAALLSVsllplqspadftPKLIIEAFKCMVPAIMMNNYANAINQLADVhidkvnkpylplacgdfsmgegLAITIASPLMAVAMGImlrspplvIGFIIWCIvggaysidlppllrwkgnpLMAAVTIISMNGLLLLFPFFIHFQKivlgnpvaftkpVLFTAAYMVIWNAAIAFVKVTNSEIE
Flexible Loop (DISEMBL)
mqvlnkkcDAFYRLTRPYSCVSIIAALLSVSLLPLQSPADFTPKLIIEAFKCMVPAIMMNNYANAINQLADVHIDKVNKPYLPLACGDFSMGEGLAITIASPLMAVAMGIMLRSPPLVIGFIIWCIVGGAYSIDLPPLLRWKGNPLMAAVTIISMNGLLLLFPFFIHFQKIVLGNPVAFTKPVLFTAAYMVIWNAAIAFVKVTNSEIE
Low Complexity Region (SEG)
MQVLNKKCDAFYRLTRPYSCvsiiaallsvsllplqspADFTPKLIIEAFKCMVPaimmnnyanainQLADVHIDKVNKPYLPLACGDFSMGEGLAITIASPLMAVAMGIMLRSPPLVIGFIIWCIVGGAYSIDLPPLLRWKGNPLMAAVTIISMNGLLLLFPFFIHFQKIVLGNPVAFTKPVLFTAAYMVIWNAAIAFVKVTNSEIE
Disordered region (IsUnstruct)
****NKKCDAFYRLTRPYSCVSIIAALLSVSLLPLQSPADFTPKLIIEAFKCMVPAIMMNNYANAINQLADVHIDKVNKPYLPLACGDFSMGEGLAITIASPLMAVAMGIMLRSPPLVIGFIIWCIVGGAYSIDLPPLLRWKGNPLMAAVTIISMNGLLLLFPFFIHFQKIVLGNPVAFTKPVLFTAAYMVIWNAAIAFVKVT*****
Disordered Region (DISOPRED)
****NKKCDAFYRLTRPYSCVSIIAALLSVSLLPLQSPADFTPKLIIEAFKCMVPAIMMNNYANAINQLADVHIDKVNKPYLPLACGDFSMGEGLAITIASPLMAVAMGIMLRSPPLVIGFIIWCIVGGAYSIDLPPLLRWKGNPLMAAVTIISMNGLLLLFPFFIHFQKIVLGNPVAFTKPVLFTAAYMVIWNAAIAFVKVTNS***
Disordered Region (DISEMBL)
MQVLNKKCDAFYRLTRPYSCVSIIAALLSVSLLPLQSPADFTPKLIIEAFKCMVPAIMMNNYANAINQLADVHIDKVNKPYLPLACGDFSMGEGLAITIASPLMAVAMGIMLRSPPLVIGFIIWCIVGGAYSIDLPPLLRWKGNPLMAAVTIISMNGLLLLFPFFIHFQKIVLGNPVAFTKPVLFTAAYMVIWNAAIAFVKVTNSEIE
Disordered Region (DISPRO)
MQVLNKKCDAFYRLTRPYSCVSIIAALLSVSLLPLQSPADFTPKLIIEAFKCMVPAIMMNNYANAINQLADVHIDKVNKPYLPLACGDFSMGEGLAITIASPLMAVAMGIMLRSPPLVIGFIIWCIVGGAYSIDLPPLLRWKGNPLMAAVTIISMNGLLLLFPFFIHFQKIVLGNPVAFTKPVLFTAAYMVIWNAAIAFVKVTN****
Transmembrane Helix (TMHMM)
iiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiii
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHooooooooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHooooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiii
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHooooooooHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooHHHHHHHHHHHHHHHHHHHiiiiiiii
TM Helix, Signal Peptide (Phobius)
iiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHoooooooooooHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooo
Signal Peptide (SignalP HMM Mode)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MQVLNKKCDAFYRLTRPYSCVSIIAALLSVSLLPLQSPADFTPKLIIEAFKCMVPAIMMNNYANAINQLADVHIDKVNKPYLPLACGDFSMGEGLAITIASPLMAVAMGIMLRSPPLVIGFIIWCIVGGAYSIDLPPLLRWKGNPLMAAVTIISMNGLLLLFPFFIHFQKIVLGNPVAFTKPVLFTAAYMVIWNAAIAFVKVTNSEIE
Positional Conservation
no confident homologs detected

---

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	208	2.2.26 [Sep-21-2011]
Q8VWJ1	393	Homogentisate phytyltrans	yes	no	0.923	0.488	0.409	1e-38
B7FA90	404	Probable homogentisate ph	no	no	0.947	0.487	0.378	2e-35
B9A1Q4	409	Glycinol 4-dimethylallylt	no	no	0.923	0.469	0.341	3e-26
B1B3P3	410	Naringenin 8-dimethylally	N/A	no	0.947	0.480	0.333	3e-26
Q0D576	379	Probable homogentisate ph	no	no	0.932	0.511	0.280	7e-13
Q1ACB3	386	Homogentisate phytyltrans	no	no	0.860	0.463	0.313	1e-12
B1L6Z7	281	Digeranylgeranylglyceryl	yes	no	0.572	0.423	0.323	4e-07
Q9UWY6	282	Digeranylgeranylglyceryl	yes	no	0.423	0.312	0.344	2e-05
A3CW74	279	Digeranylgeranylglyceryl	yes	no	0.365	0.272	0.289	0.0009

>sp|Q8VWJ1|HPT1_ARATH Homogentisate phytyltransferase 1, chloroplastic OS=Arabidopsis thaliana GN=VTE2-1 PE=2 SV=1

 Score =  159 bits (403), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 79/193 (40%), Positives = 126/193 (65%), Gaps = 1/193 (0%)

Query: 9   DAFYRLTRPYSCVSIIAALLSVSLLPLQSPADFTPKLIIEAFKCMVPAIMMNNYANAINQ 68
           DAFYR +RP++ +  + ++LSVS L ++  +D +P L     + +V A+MMN Y   +NQ
Sbjct: 98  DAFYRFSRPHTVIGTVLSILSVSFLAVEKVSDISPLLFTGILEAVVAALMMNIYIVGLNQ 157

Query: 69  LADVHIDKVNKPYLPLACGDFSMGEGLAITIASPLMAVAMGIMLRSPPLVIGFIIWCIVG 128
           L+DV IDKVNKPYLPLA G++S+  G+AI  +  +M+  +G ++ S PL     +  ++G
Sbjct: 158 LSDVEIDKVNKPYLPLASGEYSVNTGIAIVASFSIMSFWLGWIVGSWPLFWALFVSFMLG 217

Query: 129 GAYSIDLPPLLRWKGNPLMAAVTIISMNGLLLLFPFFIHFQKIVLGNPVAFTKPVLFTAA 188
            AYSI+L PLLRWK   L+AA+ I+++  +++   F++H Q  V G P+ FT+P++F  A
Sbjct: 218 TAYSINL-PLLRWKRFALVAAMCILAVRAIIVQIAFYLHIQTHVFGRPILFTRPLIFATA 276

Query: 189 YMVIWNAAIAFVK 201
           +M  ++  IA  K
Sbjct: 277 FMSFFSVVIALFK 289

Involved in the synthesis of tocopherol (vitamin E). Catalyzes the condensation of homogentisate and phytyl diphosphate to form dimethylphytylhydrquinone. Tocopherol functions to limit lipid oxidation during seed desiccation, quiescence and germination and early seedling development. Protects thylakoid membrane lipids from photooxidation and is required for low-temperature adaptation.
Arabidopsis thaliana (taxid: 3702)
EC: 2EC: .EC: 5EC: .EC: 1EC: .EC: nEC: 8

>sp|B7FA90|HPT1_ORYSJ Probable homogentisate phytyltransferase 1, chloroplastic OS=Oryza sativa subsp. japonica GN=HPT1 PE=2 SV=1

 Score =  148 bits (374), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 75/198 (37%), Positives = 122/198 (61%), Gaps = 1/198 (0%)

Query: 4   LNKKCDAFYRLTRPYSCVSIIAALLSVSLLPLQSPADFTPKLIIEAFKCMVPAIMMNNYA 63
           ++   DAFYR +RP++ +    +++SVSLL +++ +D +P  +    + +V A+ MN Y 
Sbjct: 104 ISSSLDAFYRFSRPHTVIGTALSIVSVSLLAVENLSDVSPLFLTGLLEAVVAALFMNIYI 163

Query: 64  NAINQLADVHIDKVNKPYLPLACGDFSMGEGLAITIASPLMAVAMGIMLRSPPLVIGFII 123
             +NQL D+ IDKVNKP LPLA G++S   G+A+  A   M+  +G  + S PL +   I
Sbjct: 164 VGLNQLFDIEIDKVNKPTLPLASGEYSPATGVALVSAFAAMSFGLGWAVGSQPLFLALFI 223

Query: 124 WCIVGGAYSIDLPPLLRWKGNPLMAAVTIISMNGLLLLFPFFIHFQKIVLGNPVAFTKPV 183
             I+G AYSI+L P LRWK + ++AA+ I+++  +++   FF+H Q  V   P  FT+P+
Sbjct: 224 SFILGTAYSINL-PFLRWKRSAVVAALCILAVRAVIVQLAFFLHIQTFVFRRPAVFTRPL 282

Query: 184 LFTAAYMVIWNAAIAFVK 201
           +F  A+M  ++  IA  K
Sbjct: 283 IFATAFMTFFSVVIALFK 300

Involved in the synthesis of tocopherol (vitamin E). Catalyzes the condensation of homogentisate and phytyl diphosphate to form dimethylphytylhydroquinone.

Oryza sativa subsp. japonica (taxid: 39947)

EC: 2

EC: .

EC: 5

EC: .

EC: 1

EC: .

EC: n

EC: 8

>sp|B9A1Q4|G4DT_SOYBN Glycinol 4-dimethylallyltransferase OS=Glycine max GN=G4DT PE=1 SV=1

 Score =  118 bits (295), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 66/193 (34%), Positives = 105/193 (54%), Gaps = 1/193 (0%)

Query: 9   DAFYRLTRPYSCVSIIAALLSVSLLPLQSPADFTPKLIIEAFKCMVPAIMMNNYANAINQ 68
            AFY  + PY+ + I     S SLL ++  +D +   +I   + ++P + +  Y   +NQ
Sbjct: 114 SAFYWFSYPYTMIGITLCAFSSSLLAVEKLSDISLSFLIGVLQGVLPQLFIEIYLCGVNQ 173

Query: 69  LADVHIDKVNKPYLPLACGDFSMGEGLAITIASPLMAVAMGIMLRSPPLVIGFIIWCIVG 128
           L D+ IDK+NKP+LP+A G FS   G+ I+ A   ++     +  S PL+   ++     
Sbjct: 174 LYDLEIDKINKPHLPMASGQFSFKTGVIISAAFLALSFGFTWITGSWPLICNLVVIASSW 233

Query: 129 GAYSIDLPPLLRWKGNPLMAAVTIISMNGLLLLFPFFIHFQKIVLGNPVAFTKPVLFTAA 188
            AYSID+ PLLRWK  P +AA+ +IS   L L   +F H Q +VL  P+ F + + F  A
Sbjct: 234 TAYSIDV-PLLRWKRYPFVAAMCMISTWALALPISYFHHMQTVVLKRPIGFPRSLGFLVA 292

Query: 189 YMVIWNAAIAFVK 201
           +M  ++  +A  K
Sbjct: 293 FMTFYSLGLALSK 305

Proposed to be involved in the biosynthesis of pterocarpan phytoalexins, specifically glyceollins. Can act as a prenyltransferase towards glycinol which is the direct precursor of glyceollins. Seems to be specific for prenylation at C-4 thus producing glyceollin I.

Glycine max (taxid: 3847)

EC: 2

EC: .

EC: 5

EC: .

EC: 1

EC: .

EC: 3

EC: 6

>sp|B1B3P3|N8DT1_SOPFL Naringenin 8-dimethylallyltransferase 1, chloroplastic OS=Sophora flavescens GN=N8DT-1 PE=1 SV=1

 Score =  118 bits (295), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 66/198 (33%), Positives = 105/198 (53%), Gaps = 1/198 (0%)

Query: 4   LNKKCDAFYRLTRPYSCVSIIAALLSVSLLPLQSPADFTPKLIIEAFKCMVPAIMMNNYA 63
           +N   D FY+  RPY+  +I+      SL+ ++  +D +    I   + +V  I ++ + 
Sbjct: 110 VNDALDIFYKFCRPYAMFTIVLGATFKSLVAVEKLSDLSLAFFIGWLQVVVAVICIHIFG 169

Query: 64  NAINQLADVHIDKVNKPYLPLACGDFSMGEGLAITIASPLMAVAMGIMLRSPPLVIGFII 123
             +NQL D+ IDK+NKP LPLA G  S    + IT +S ++ +    ++ S PL     I
Sbjct: 170 VGLNQLCDIEIDKINKPDLPLASGKLSFRNVVIITASSLILGLGFAWIVDSWPLFWTVFI 229

Query: 124 WCIVGGAYSIDLPPLLRWKGNPLMAAVTIISMNGLLLLFPFFIHFQKIVLGNPVAFTKPV 183
            C+V  AY++DL PLLRWK  P++ A+  I+   +     FF+H Q  V   P  F +P+
Sbjct: 230 SCMVASAYNVDL-PLLRWKKYPVLTAINFIADVAVTRSLGFFLHMQTCVFKRPTTFPRPL 288

Query: 184 LFTAAYMVIWNAAIAFVK 201
           +F  A + I+   IA  K
Sbjct: 289 IFCTAIVSIYAIVIALFK 306

Involved in the biosynthesis of sophoraflavanone G (SFG). Can use flavanones (naringenin, liquiritigenin and hesperetin) as substrates, but not flavonols or isoflavones. Shows a strict specificity for dimethylallyl diphosphate.

Sophora flavescens (taxid: 49840)

EC: 2

EC: .

EC: 5

EC: .

EC: 1

EC: .

EC: 7

EC: 0

>sp|Q0D576|HPT2_ORYSJ Probable homogentisate phytyltransferase 2, chloroplastic OS=Oryza sativa subsp. japonica GN=HPT2 PE=3 SV=2

 Score = 73.9 bits (180), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 57/203 (28%), Positives = 99/203 (48%), Gaps = 9/203 (4%)

Query: 2   QVLNKKCDAFYRLTRPYSCVSIIAALLSVSLLP---LQSPADFTPKLIIEAFKCMVPAIM 58
           + L+   D+ +R  RP++      AL S++L+    +++P      L+ +AF  +V  I 
Sbjct: 78  KTLSDLKDSCWRFLRPHTIRG--TALGSIALVARALIENPQLINWWLVFKAFYGLVALIC 135

Query: 59  MNNYANAINQLADVHIDKVNKPYLPLACGDFSMGEGLAITIASPLMAVAMGIMLRSPPLV 118
            N Y   INQ+ D+ IDKVNKPYLP+A GD S+     + +       ++ +    P + 
Sbjct: 136 GNGYIVGINQIYDIRIDKVNKPYLPIAAGDLSVQTAWLLVVLFAAAGFSIVVTNFGPFIT 195

Query: 119 IGFIIWCIVGGAYSIDLPPLLRWKGNPLMAAVTIISMNGLLLLFPFFIHFQKIVLGNPVA 178
             + +   +G  YS+   P  R K  P+ A + I ++ G LL F  + +  +  LG    
Sbjct: 196 SLYCLGLFLGTIYSV---PPFRLKRYPVAAFLIIATVRGFLLNFGVY-YATRAALGLTFQ 251

Query: 179 FTKPVLFTAAYMVIWNAAIAFVK 201
           ++ PV F   ++ ++   IA  K
Sbjct: 252 WSSPVAFITCFVTLFALVIAITK 274

Involved in the synthesis of tocopherol (vitamin E). Catalyzes the condensation of homogentisate and phytyl diphosphate to form dimethylphytylhydrquinone.

Oryza sativa subsp. japonica (taxid: 39947)

EC: 2

EC: .

EC: 5

EC: .

EC: 1

EC: .

EC: n

EC: 8

>sp|Q1ACB3|HPT2_ARATH Homogentisate phytyltransferase 2, chloroplastic OS=Arabidopsis thaliana GN=HPT2 PE=2 SV=1

 Score = 73.6 bits (179), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 64/204 (31%), Positives = 101/204 (49%), Gaps = 25/204 (12%)

Query: 9   DAFYRLTRPYSCVSIIAALLSVSLLP---LQSPADFTPKLIIEAFKCMVPAIMMNNYANA 65
           +A +R  RP++      AL S +L+    +++       L+++A   ++  I  N Y   
Sbjct: 92  NACWRFLRPHTIRG--TALGSTALVTRALIENTHLIKWSLVLKALSGLLALICGNGYIVG 149

Query: 66  INQLADVHIDKVNKPYLPLACGDFSMGEGLAITIASPLMAVAMGIMLRSPPLVIGFIIWC 125
           INQ+ D+ IDKVNKPYLP+A GD S+     + I     A+A G+      LV+GF    
Sbjct: 150 INQIYDIGIDKVNKPYLPIAAGDLSVQSAWLLVI---FFAIA-GL------LVVGFNFGP 199

Query: 126 IVGGAYSIDL--------PPLLRWKGNPLMAAVTIISMNGLLLLFPFFIHFQKIVLGNPV 177
            +   YS+ L        PP LR K  P+ A + I ++ G LL F  + H  +  LG P 
Sbjct: 200 FITSLYSLGLFLGTIYSVPP-LRMKRFPVAAFLIIATVRGFLLNFGVY-HATRAALGLPF 257

Query: 178 AFTKPVLFTAAYMVIWNAAIAFVK 201
            ++ PV F  +++ ++   IA  K
Sbjct: 258 QWSAPVAFITSFVTLFALVIAITK 281

Involved in the synthesis of tocopherol (vitamin E). Catalyzes the condensation of homogentisate and phytyl diphosphate to form dimethylphytylhydrquinone.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 5

EC: .

EC: 1

EC: .

EC: n

EC: 8

>sp|B1L6Z7|DGGGP_KORCO Digeranylgeranylglyceryl phosphate synthase OS=Korarchaeum cryptofilum (strain OPF8) GN=Kcr_1480 PE=3 SV=1

 Score = 55.1 bits (131), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 44/136 (32%), Positives = 67/136 (49%), Gaps = 17/136 (12%)

Query: 7   KCDAFYRLTRPYSCV-SIIAALLSVSLLPLQSPADFTPKLIIEAFKCMVPAIMMNNYANA 65
           K  A+  ++RP + + SI+  L       + S + +  +LI+    C++P +++    NA
Sbjct: 3   KLGAYVEISRPKNALMSILGTLTGW----VNSTSVYDGRLILA---CLIPPLVLMA-GNA 54

Query: 66  INQLADVHIDKVNKPYLPLACGDFSMGEGLAITIASPLMAVAMGIMLRSPPLVIGFIIWC 125
           IN   D  ID +NKPY P+  G  S  E L I IA  L  +A+ I L       GFI + 
Sbjct: 55  INDYYDAEIDAINKPYRPIPSGRISKREALNIYIALSLFGIALSIFL-------GFIEFL 107

Query: 126 IVGGAYSIDLPPLLRW 141
           IV  A+S+      RW
Sbjct: 108 IV-TAFSLSWYAYARW 122

Prenyltransferase that catalyzes the transfer of the geranylgeranyl moiety of geranylgeranyl diphosphate (GGPP) to the C2 hydroxyl of (S)-3-O-geranylgeranylglyceryl phosphate (GGGP). This reaction is the second ether-bond-formation step in the biosynthesis of archaeal membrane lipids.

Korarchaeum cryptofilum (strain OPF8) (taxid: 374847)

EC: 2

EC: .

EC: 5

EC: .

EC: 1

EC: .

EC: 4

EC: 2

>sp|Q9UWY6|DGGGP_SULSO Digeranylgeranylglyceryl phosphate synthase OS=Sulfolobus solfataricus (strain ATCC 35092 / DSM 1617 / JCM 11322 / P2) GN=ubiA-2 PE=1 SV=1

 Score = 49.3 bits (116), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 31/90 (34%), Positives = 49/90 (54%), Gaps = 2/90 (2%)

Query: 66  INQLADVHIDKVNKPYLPLACGDFSMGEGLAITIASPLMAVAMGIMLRSPPLVIGFIIWC 125
           IN + DV IDK+NKPY P+  G  S+ +  A++IA  ++ +A+ I+L    LVI  +   
Sbjct: 56  INDVYDVEIDKINKPYRPIPSGKISVNKAKALSIALFIIGIALSILLNIYALVIALV--T 113

Query: 126 IVGGAYSIDLPPLLRWKGNPLMAAVTIISM 155
            +G  Y         + GN L+A  T +S+
Sbjct: 114 AIGLIYYAKDLKKTGFYGNLLVATTTALSI 143

Prenyltransferase that catalyzes the transfer of the geranylgeranyl moiety of geranylgeranyl diphosphate (GGPP) to the C2 hydroxyl of (S)-3-O-geranylgeranylglyceryl phosphate (GGGP). This reaction is the second ether-bond-formation step in the biosynthesis of archaeal membrane lipids. Can not use other prenyl donors, i.e. farnesyl diphosphate (FPP) and phytyl diphosphate. Moreover, 4-hydroxybenzoate, 1,4-dihydroxy 2-naphthoate, homogentisate, and alpha-glycerophosphate do not function as prenyl acceptor substrates.

Sulfolobus solfataricus (strain ATCC 35092 / DSM 1617 / JCM 11322 / P2) (taxid: 273057)

EC: 2

EC: .

EC: 5

EC: .

EC: 1

EC: .

EC: 4

EC: 2

>sp|A3CW74|DGGGP_METMJ Digeranylgeranylglyceryl phosphate synthase OS=Methanoculleus marisnigri (strain ATCC 35101 / DSM 1498 / JR1) GN=Memar_1697 PE=3 SV=1

 Score = 43.9 bits (102), Expect = 9e-04,   Method: Compositional matrix adjust.
 Identities = 24/83 (28%), Positives = 44/83 (53%), Gaps = 7/83 (8%)

Query: 9  DAFYRLTRPYSCVSIIAALLSVSLLPLQSPADFTPKLIIEAFKCMVPAIMMNNYANAINQ 68
           AF R+TRP++  +++A L ++    + +     P L++     ++ A       N IN 
Sbjct: 4  SAFIRITRPHN--AVVAGLTALIGYLIATGTLTPPSLLLAVIVALITA-----GGNVIND 56

Query: 69 LADVHIDKVNKPYLPLACGDFSM 91
          + DV ID++N+P  P+  GD S+
Sbjct: 57 VRDVEIDRINRPDRPIPAGDISL 79

Prenyltransferase that catalyzes the transfer of the geranylgeranyl moiety of geranylgeranyl diphosphate (GGPP) to the C2 hydroxyl of (S)-3-O-geranylgeranylglyceryl phosphate (GGGP). This reaction is the second ether-bond-formation step in the biosynthesis of archaeal membrane lipids.

Methanoculleus marisnigri (strain ATCC 35101 / DSM 1498 / JR1) (taxid: 368407)

EC: 2

EC: .

EC: 5

EC: .

EC: 1

EC: .

EC: 4

EC: 2

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	208
359476155	397	PREDICTED: probable homogentisate phytyl	0.947	0.496	0.454	2e-42
296082088	398	unnamed protein product [Vitis vinifera]	0.947	0.494	0.454	2e-42
224143266	284	predicted protein [Populus trichocarpa]	0.918	0.672	0.442	2e-42
295656253	401	homogentisate geranylgeranyl transferase	0.937	0.486	0.448	3e-39
219842170	411	homogentisate geranylgeranyl transferase	0.937	0.474	0.418	1e-38
171190284	317	homogentisate geranylgeranyl transferase	0.956	0.627	0.435	2e-38
377657555	394	homogentisate phytyltransferase [Brassic	0.923	0.487	0.419	1e-37
297836742	393	predicted protein [Arabidopsis lyrata su	0.923	0.488	0.409	4e-37
377657557	394	homogentisate phytyltransferase [Brassic	0.923	0.487	0.419	4e-37
30680535	393	homogentisate phytyltransferase 1 [Arabi	0.923	0.488	0.409	5e-37

>gi|359476155|ref|XP_002282953.2| PREDICTED: probable homogentisate phytyltransferase 1, chloroplastic-like [Vitis vinifera]

 Score =  177 bits (450), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 90/198 (45%), Positives = 128/198 (64%), Gaps = 1/198 (0%)

Query: 4   LNKKCDAFYRLTRPYSCVSIIAALLSVSLLPLQSPADFTPKLIIEAFKCMVPAIMMNNYA 63
           ++K+  AFY  +RP++ +  +  + SVSLLPL++ +D +P   +   K MVP+++MN Y 
Sbjct: 97  VSKQLRAFYLFSRPHTIIGTVIGITSVSLLPLETISDLSPAFFVGLLKAMVPSVLMNIYV 156

Query: 64  NAINQLADVHIDKVNKPYLPLACGDFSMGEGLAITIASPLMAVAMGIMLRSPPLVIGFII 123
             +NQ+ DV IDKVNKP LPLA GDFSM  G  I   S LM+V MGIM +SPPL    +I
Sbjct: 157 VGLNQIFDVEIDKVNKPELPLASGDFSMETGSQIVFISLLMSVGMGIMFQSPPLFCALLI 216

Query: 124 WCIVGGAYSIDLPPLLRWKGNPLMAAVTIISMNGLLLLFPFFIHFQKIVLGNPVAFTKPV 183
             ++G AYSI++ PLLRWK  PL+AA  I+ +  +++   FF H QK VLG  + +TK V
Sbjct: 217 SFLLGTAYSIEI-PLLRWKRYPLLAASCILIVRAIVVQLAFFAHIQKHVLGRSIVYTKSV 275

Query: 184 LFTAAYMVIWNAAIAFVK 201
           +F  A+M  ++  IA  K
Sbjct: 276 VFGVAFMCFFSTVIALFK 293

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|296082088|emb|CBI21093.3| unnamed protein product [Vitis vinifera]

 Score =  177 bits (449), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 90/198 (45%), Positives = 128/198 (64%), Gaps = 1/198 (0%)

Query: 4   LNKKCDAFYRLTRPYSCVSIIAALLSVSLLPLQSPADFTPKLIIEAFKCMVPAIMMNNYA 63
           ++K+  AFY  +RP++ +  +  + SVSLLPL++ +D +P   +   K MVP+++MN Y 
Sbjct: 73  VSKQLRAFYLFSRPHTIIGTVIGITSVSLLPLETISDLSPAFFVGLLKAMVPSVLMNIYV 132

Query: 64  NAINQLADVHIDKVNKPYLPLACGDFSMGEGLAITIASPLMAVAMGIMLRSPPLVIGFII 123
             +NQ+ DV IDKVNKP LPLA GDFSM  G  I   S LM+V MGIM +SPPL    +I
Sbjct: 133 VGLNQIFDVEIDKVNKPELPLASGDFSMETGSQIVFISLLMSVGMGIMFQSPPLFCALLI 192

Query: 124 WCIVGGAYSIDLPPLLRWKGNPLMAAVTIISMNGLLLLFPFFIHFQKIVLGNPVAFTKPV 183
             ++G AYSI++ PLLRWK  PL+AA  I+ +  +++   FF H QK VLG  + +TK V
Sbjct: 193 SFLLGTAYSIEI-PLLRWKRYPLLAASCILIVRAIVVQLAFFAHIQKHVLGRSIVYTKSV 251

Query: 184 LFTAAYMVIWNAAIAFVK 201
           +F  A+M  ++  IA  K
Sbjct: 252 VFGVAFMCFFSTVIALFK 269

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224143266|ref|XP_002324898.1| predicted protein [Populus trichocarpa] gi|222866332|gb|EEF03463.1| predicted protein [Populus trichocarpa]

 Score =  177 bits (449), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 85/192 (44%), Positives = 125/192 (65%), Gaps = 1/192 (0%)

Query: 10  AFYRLTRPYSCVSIIAALLSVSLLPLQSPADFTPKLIIEAFKCMVPAIMMNNYANAINQL 69
           +FY+ +RP++ +  +  + SVSLLP+++ ++ +P   +   K +VP+++MN Y   +NQL
Sbjct: 3   SFYQFSRPHTVIGTLIGITSVSLLPVETISELSPTFFMGLLKALVPSVLMNIYVVGLNQL 62

Query: 70  ADVHIDKVNKPYLPLACGDFSMGEGLAITIASPLMAVAMGIMLRSPPLVIGFIIWCIVGG 129
            DV IDKVNKPYLPLA GDFSMG G+AI  AS L + AMGIM +SP L    +I C++G 
Sbjct: 63  FDVEIDKVNKPYLPLASGDFSMGTGVAIVSASLLASFAMGIMFQSPLLFSALLISCVLGS 122

Query: 130 AYSIDLPPLLRWKGNPLMAAVTIISMNGLLLLFPFFIHFQKIVLGNPVAFTKPVLFTAAY 189
            YSI+L P LRWK    +AA  I+ +  +++   FF+H QK VLG     T+ ++F  A+
Sbjct: 123 VYSIEL-PFLRWKKQAFLAATCIMIVRAIVVQLAFFVHMQKFVLGKTTVVTRSLVFATAF 181

Query: 190 MVIWNAAIAFVK 201
           M  ++A IA  K
Sbjct: 182 MCFFSAVIALFK 193

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|295656253|gb|ADG26667.1| homogentisate geranylgeranyl transferase [Coriandrum sativum]

 Score =  167 bits (422), Expect = 3e-39,   Method: Compositional matrix adjust.
 Identities = 88/196 (44%), Positives = 122/196 (62%), Gaps = 1/196 (0%)

Query: 6   KKCDAFYRLTRPYSCVSIIAALLSVSLLPLQSPADFTPKLIIEAFKCMVPAIMMNNYANA 65
           +K DAFYR +RP++ +  I  + SVSLLPL S  D +P   +   K ++P+I MN Y   
Sbjct: 103 RKIDAFYRFSRPHTIIGTIIGITSVSLLPLTSIGDLSPAFFVGYLKALIPSIFMNIYVVG 162

Query: 66  INQLADVHIDKVNKPYLPLACGDFSMGEGLAITIASPLMAVAMGIMLRSPPLVIGFIIWC 125
           +NQL DV IDKVNKP LPLA G++SMG G AI  A  LM+ AMGI+ +SPP+    +I  
Sbjct: 163 LNQLFDVEIDKVNKPNLPLASGEYSMGLGKAIVSAFGLMSFAMGIVFQSPPVFFALLICF 222

Query: 126 IVGGAYSIDLPPLLRWKGNPLMAAVTIISMNGLLLLFPFFIHFQKIVLGNPVAFTKPVLF 185
           + G AYS++L PLLRWK N  +AA +I+ +  + +   FF H QK VLG P+ F + + F
Sbjct: 223 LFGSAYSVEL-PLLRWKRNAFLAAFSILMVRAITVNLAFFYHIQKYVLGRPMVFPRSLCF 281

Query: 186 TAAYMVIWNAAIAFVK 201
               + ++   IA  K
Sbjct: 282 ATVCISMFTTVIALFK 297

Source: Coriandrum sativum

Species: Coriandrum sativum

Genus: Coriandrum

Family: Apiaceae

Order: Apiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|219842170|dbj|BAH10642.1| homogentisate geranylgeranyl transferase [Hevea brasiliensis]

 Score =  164 bits (416), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 82/196 (41%), Positives = 124/196 (63%), Gaps = 1/196 (0%)

Query: 6   KKCDAFYRLTRPYSCVSIIAALLSVSLLPLQSPADFTPKLIIEAFKCMVPAIMMNNYANA 65
           +  ++ Y+ +RP++ +  I  + SVSLLP+++  D +P   I   K +VP+++MN Y   
Sbjct: 111 EHLNSLYQFSRPHTVIGTIIGITSVSLLPVETIVDLSPTYFIGLLKALVPSVLMNIYVVG 170

Query: 66  INQLADVHIDKVNKPYLPLACGDFSMGEGLAITIASPLMAVAMGIMLRSPPLVIGFIIWC 125
           +NQL DV IDKVNKPYLPLA G FSM  G+ I  AS L+++ MGI  +SPPL+   +I  
Sbjct: 171 LNQLFDVEIDKVNKPYLPLASGKFSMATGILIVSASLLLSLYMGITFQSPPLLAALLISF 230

Query: 126 IVGGAYSIDLPPLLRWKGNPLMAAVTIISMNGLLLLFPFFIHFQKIVLGNPVAFTKPVLF 185
            +G  YSI+L P LRWK +  +AA  I+ +  +++   FF+H QK VLG  +   + ++F
Sbjct: 231 ALGSVYSIEL-PFLRWKKHAFLAASCILIVRAMVVQLAFFVHIQKFVLGKSIFIPRSLMF 289

Query: 186 TAAYMVIWNAAIAFVK 201
             A+M  ++AAIA  K
Sbjct: 290 ATAFMCFFSAAIALFK 305

Source: Hevea brasiliensis

Species: Hevea brasiliensis

Genus: Hevea

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|171190284|gb|ACB42448.1| homogentisate geranylgeranyl transferase [Angelica gigas]

 Score =  164 bits (416), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 87/200 (43%), Positives = 121/200 (60%), Gaps = 1/200 (0%)

Query: 2   QVLNKKCDAFYRLTRPYSCVSIIAALLSVSLLPLQSPADFTPKLIIEAFKCMVPAIMMNN 61
           Q L +K DAFYR TRP++ +  I  + SVSLLPL S  D +P   +   K M+P + +N 
Sbjct: 15  QNLWRKVDAFYRFTRPHTIIGSIVGITSVSLLPLVSFEDLSPAFFVGLLKVMIPIVCVNI 74

Query: 62  YANAINQLADVHIDKVNKPYLPLACGDFSMGEGLAITIASPLMAVAMGIMLRSPPLVIGF 121
           Y   +NQL DV IDKVNKP LP+A G++SM  G AI  A  LM++ MGIM +SPP++   
Sbjct: 75  YVVGLNQLYDVEIDKVNKPNLPIASGEYSMETGKAIVSAFGLMSIIMGIMFQSPPVLYCL 134

Query: 122 IIWCIVGGAYSIDLPPLLRWKGNPLMAAVTIISMNGLLLLFPFFIHFQKIVLGNPVAFTK 181
           ++    G AYSID+ PL RWK N  +AA+ I+ +  + +    F H Q+ VLG PV F++
Sbjct: 135 LVCFFFGTAYSIDV-PLFRWKKNAFLAAMCIVIVRAITVQLTVFYHIQQYVLGRPVLFSR 193

Query: 182 PVLFTAAYMVIWNAAIAFVK 201
            + F    M ++   IA  K
Sbjct: 194 SLAFAIICMTLFVTVIALFK 213

Source: Angelica gigas

Species: Angelica gigas

Genus: Angelica

Family: Apiaceae

Order: Apiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|377657555|gb|AFB74211.1| homogentisate phytyltransferase [Brassica napus]

 Score =  161 bits (408), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 81/193 (41%), Positives = 126/193 (65%), Gaps = 1/193 (0%)

Query: 9   DAFYRLTRPYSCVSIIAALLSVSLLPLQSPADFTPKLIIEAFKCMVPAIMMNNYANAINQ 68
           DAFYR +RP++ +  + ++LSVS L ++  +D +P L     + +V A+MMN Y   +NQ
Sbjct: 99  DAFYRFSRPHTVIGTVLSILSVSFLAVEKVSDISPLLFTGILEAVVAALMMNIYIVGLNQ 158

Query: 69  LADVHIDKVNKPYLPLACGDFSMGEGLAITIASPLMAVAMGIMLRSPPLVIGFIIWCIVG 128
           L+DV IDKVNKPYLPLA G++S+  G+AI  +  +M+  +G ++ S PL     +  I+G
Sbjct: 159 LSDVEIDKVNKPYLPLASGEYSVKTGIAIVASFSIMSFWLGWIVGSWPLFWALFVSFILG 218

Query: 129 GAYSIDLPPLLRWKGNPLMAAVTIISMNGLLLLFPFFIHFQKIVLGNPVAFTKPVLFTAA 188
            AYSI+L PLLRWK   L+AA+ I+++  +++   F++H Q  V G PV FT+P++F  A
Sbjct: 219 TAYSINL-PLLRWKRFALVAAMCILAVRAIIVQIAFYLHIQTHVFGRPVMFTRPLIFATA 277

Query: 189 YMVIWNAAIAFVK 201
           +M  ++  IA  K
Sbjct: 278 FMSFFSVVIALFK 290

Source: Brassica napus

Species: Brassica napus

Genus: Brassica

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297836742|ref|XP_002886253.1| predicted protein [Arabidopsis lyrata subsp. lyrata] gi|297332093|gb|EFH62512.1| predicted protein [Arabidopsis lyrata subsp. lyrata]

 Score =  160 bits (404), Expect = 4e-37,   Method: Compositional matrix adjust.
 Identities = 79/193 (40%), Positives = 126/193 (65%), Gaps = 1/193 (0%)

Query: 9   DAFYRLTRPYSCVSIIAALLSVSLLPLQSPADFTPKLIIEAFKCMVPAIMMNNYANAINQ 68
           DAFYR +RP++ +  + ++LSVS L ++  +D +P L     + +V A+MMN Y   +NQ
Sbjct: 98  DAFYRFSRPHTVIGTVLSILSVSFLAVEKVSDISPLLFTGILEAVVAALMMNIYIVGLNQ 157

Query: 69  LADVHIDKVNKPYLPLACGDFSMGEGLAITIASPLMAVAMGIMLRSPPLVIGFIIWCIVG 128
           L+DV IDKVNKPYLPLA G++S+  G+AI  +  +M+  +G ++ S PL     +  ++G
Sbjct: 158 LSDVEIDKVNKPYLPLASGEYSVNTGIAIVASFSIMSFWLGWIVGSWPLFWALFVSFMLG 217

Query: 129 GAYSIDLPPLLRWKGNPLMAAVTIISMNGLLLLFPFFIHFQKIVLGNPVAFTKPVLFTAA 188
            AYSI+L PLLRWK   L+AA+ I+++  +++   F++H Q  V G P+ FT+P++F  A
Sbjct: 218 TAYSINL-PLLRWKRFALVAAMCILAVRAIIVQIAFYLHIQTHVFGRPILFTRPLIFATA 276

Query: 189 YMVIWNAAIAFVK 201
           +M  ++  IA  K
Sbjct: 277 FMSFFSVVIALFK 289

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|377657557|gb|AFB74212.1| homogentisate phytyltransferase [Brassica napus]

 Score =  160 bits (404), Expect = 4e-37,   Method: Compositional matrix adjust.
 Identities = 81/193 (41%), Positives = 126/193 (65%), Gaps = 1/193 (0%)

Query: 9   DAFYRLTRPYSCVSIIAALLSVSLLPLQSPADFTPKLIIEAFKCMVPAIMMNNYANAINQ 68
           DAFYR +RP++ +  + ++LSVS L ++  +D +P L     + +V A+MMN Y   +NQ
Sbjct: 99  DAFYRFSRPHTVIGTVLSILSVSFLAVEKVSDISPLLFTGILEAVVAALMMNIYIVGLNQ 158

Query: 69  LADVHIDKVNKPYLPLACGDFSMGEGLAITIASPLMAVAMGIMLRSPPLVIGFIIWCIVG 128
           L+DV IDKVNKPYLPLA G++S+  G+AI  +  +M+  +G ++ S PL     +  I+G
Sbjct: 159 LSDVEIDKVNKPYLPLASGEYSVKTGIAIVASFFIMSFWLGWIVGSWPLFWALFVSFILG 218

Query: 129 GAYSIDLPPLLRWKGNPLMAAVTIISMNGLLLLFPFFIHFQKIVLGNPVAFTKPVLFTAA 188
            AYSI+L PLLRWK   L+AA+ I+++  +++   F++H Q  V G PV FT+P++F  A
Sbjct: 219 TAYSINL-PLLRWKRFALVAAMCILAVRAIIVQIAFYLHIQTHVFGRPVMFTRPLIFATA 277

Query: 189 YMVIWNAAIAFVK 201
           +M  ++  IA  K
Sbjct: 278 FMSFFSVVIALFK 290

Source: Brassica napus

Species: Brassica napus

Genus: Brassica

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|30680535|ref|NP_849984.1| homogentisate phytyltransferase 1 [Arabidopsis thaliana] gi|75161194|sp|Q8VWJ1.1|HPT1_ARATH RecName: Full=Homogentisate phytyltransferase 1, chloroplastic; AltName: Full=Tocopherol polyprenyltransferase 1; AltName: Full=Vitamin E pathway gene 2-1 protein; Short=AtVTE2-1; Flags: Precursor gi|17104828|gb|AAL35412.1|AF324344_1 tocopherol polyprenyltransferase [Arabidopsis thaliana] gi|17380874|gb|AAL36249.1| unknown protein [Arabidopsis thaliana] gi|20384919|gb|AAM10489.1| homogentisate phytylprenyltransferase [Arabidopsis thaliana] gi|21281072|gb|AAM45041.1| unknown protein [Arabidopsis thaliana] gi|281193026|gb|ADA57641.1| homogentisate phytyltransferase [Arabidopsis thaliana] gi|330251737|gb|AEC06831.1| homogentisate phytyltransferase 1 [Arabidopsis thaliana]

 Score =  159 bits (403), Expect = 5e-37,   Method: Compositional matrix adjust.
 Identities = 79/193 (40%), Positives = 126/193 (65%), Gaps = 1/193 (0%)

Query: 9   DAFYRLTRPYSCVSIIAALLSVSLLPLQSPADFTPKLIIEAFKCMVPAIMMNNYANAINQ 68
           DAFYR +RP++ +  + ++LSVS L ++  +D +P L     + +V A+MMN Y   +NQ
Sbjct: 98  DAFYRFSRPHTVIGTVLSILSVSFLAVEKVSDISPLLFTGILEAVVAALMMNIYIVGLNQ 157

Query: 69  LADVHIDKVNKPYLPLACGDFSMGEGLAITIASPLMAVAMGIMLRSPPLVIGFIIWCIVG 128
           L+DV IDKVNKPYLPLA G++S+  G+AI  +  +M+  +G ++ S PL     +  ++G
Sbjct: 158 LSDVEIDKVNKPYLPLASGEYSVNTGIAIVASFSIMSFWLGWIVGSWPLFWALFVSFMLG 217

Query: 129 GAYSIDLPPLLRWKGNPLMAAVTIISMNGLLLLFPFFIHFQKIVLGNPVAFTKPVLFTAA 188
            AYSI+L PLLRWK   L+AA+ I+++  +++   F++H Q  V G P+ FT+P++F  A
Sbjct: 218 TAYSINL-PLLRWKRFALVAAMCILAVRAIIVQIAFYLHIQTHVFGRPILFTRPLIFATA 276

Query: 189 YMVIWNAAIAFVK 201
           +M  ++  IA  K
Sbjct: 277 FMSFFSVVIALFK 289

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	208
TAIR|locus:2044440	393	HPT1 "homogentisate phytyltran	0.923	0.488	0.352	1.6e-29
UNIPROTKB|B1B5P4	407	SfN8DT-2 "Naringenin 8-dimethy	0.947	0.484	0.303	4.4e-22
UNIPROTKB|B1B3P3	410	N8DT-1 "Naringenin 8-dimethyla	0.947	0.480	0.308	6.1e-22
TAIR|locus:4010713740	393	HST "homogentisate prenyltrans	0.620	0.328	0.318	4.5e-12

TAIR|locus:2044440 HPT1 "homogentisate phytyltransferase 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 327 (120.2 bits), Expect = 1.6e-29, P = 1.6e-29
 Identities = 68/193 (35%), Positives = 107/193 (55%)

Query:     9 DAFYRLTRPYSCXXXXXXXXXXXXXXXXXXADFTPKLIIEAFKCMVPXXXXXXXXXXXXQ 68
             DAFYR +RP++                   +D +P L     + +V             Q
Sbjct:    98 DAFYRFSRPHTVIGTVLSILSVSFLAVEKVSDISPLLFTGILEAVVAALMMNIYIVGLNQ 157

Query:    69 LADVHIDKVNKPYLPLACGDFSMGEGLAITIASPLMAVAMGIMLRSPPLVIGFIIWCIVG 128
             L+DV IDKVNKPYLPLA G++S+  G+AI  +  +M+  +G ++ S PL     +  ++G
Sbjct:   158 LSDVEIDKVNKPYLPLASGEYSVNTGIAIVASFSIMSFWLGWIVGSWPLFWALFVSFMLG 217

Query:   129 GAYSIDLPPLLRWKGNPLMAAVTIISMNGLLLLFPFFIHFQKIVLGNPVAFTKPVLFTAA 188
              AYSI+LP LLRWK   L+AA+ I+++  +++   F++H Q  V G P+ FT+P++F  A
Sbjct:   218 TAYSINLP-LLRWKRFALVAAMCILAVRAIIVQIAFYLHIQTHVFGRPILFTRPLIFATA 276

Query:   189 YMVIWNAAIAFVK 201
             +M  ++  IA  K
Sbjct:   277 FMSFFSVVIALFK 289

GO:0004659 "prenyltransferase activity" evidence=IEA;IDA

GO:0005886 "plasma membrane" evidence=ISM

GO:0010189 "vitamin E biosynthetic process" evidence=IMP;TAS

GO:0016021 "integral to membrane" evidence=IEA

GO:0009507 "chloroplast" evidence=ISS

GO:0010176 "homogentisate phytyltransferase activity" evidence=IMP;IDA

GO:0042362 "fat-soluble vitamin biosynthetic process" evidence=TAS

GO:0009266 "response to temperature stimulus" evidence=IMP

GO:0009915 "phloem sucrose loading" evidence=IMP

GO:0031347 "regulation of defense response" evidence=IMP

GO:0006636 "unsaturated fatty acid biosynthetic process" evidence=RCA;IMP

GO:0071555 "cell wall organization" evidence=IMP

GO:0000096 "sulfur amino acid metabolic process" evidence=RCA

GO:0006546 "glycine catabolic process" evidence=RCA

GO:0006733 "oxidoreduction coenzyme metabolic process" evidence=RCA

GO:0006766 "vitamin metabolic process" evidence=RCA

GO:0008652 "cellular amino acid biosynthetic process" evidence=RCA

GO:0009072 "aromatic amino acid family metabolic process" evidence=RCA

GO:0009106 "lipoate metabolic process" evidence=RCA

GO:0009108 "coenzyme biosynthetic process" evidence=RCA

GO:0009117 "nucleotide metabolic process" evidence=RCA

GO:0009416 "response to light stimulus" evidence=RCA

GO:0009695 "jasmonic acid biosynthetic process" evidence=RCA

GO:0009965 "leaf morphogenesis" evidence=RCA

GO:0015994 "chlorophyll metabolic process" evidence=RCA

GO:0019216 "regulation of lipid metabolic process" evidence=RCA

GO:0019288 "isopentenyl diphosphate biosynthetic process, mevalonate-independent pathway" evidence=RCA

GO:0019748 "secondary metabolic process" evidence=RCA

GO:0030154 "cell differentiation" evidence=RCA

GO:0031408 "oxylipin biosynthetic process" evidence=RCA

GO:0044272 "sulfur compound biosynthetic process" evidence=RCA

GO:0045893 "positive regulation of transcription, DNA-dependent" evidence=RCA

UNIPROTKB|B1B5P4 SfN8DT-2 "Naringenin 8-dimethylallyltransferase" [Sophora flavescens (taxid:49840)]

 Score = 259 (96.2 bits), Expect = 4.4e-22, P = 4.4e-22
 Identities = 60/198 (30%), Positives = 92/198 (46%)

Query:     4 LNKKCDAFYRLTRPYSCXXXXXXXXXXXXXXXXXXADFTPKLIIEAFKCMVPXXXXXXXX 63
             +N   D FY+  RPY+                   +D +    I   + +V         
Sbjct:   107 VNDALDTFYKFCRPYAIFSVVLGATFKSLVAVERLSDLSLAFFIGWLQVVVAVICIHIFD 166

Query:    64 XXXXQLADVHIDKVNKPYLPLACGDFSMGEGLAITIASPLMAVAMGIMLRSPPLVIGFII 123
                 QL D+ IDK+NKP LPLA G+ S    + IT +S ++ +    ++ S PL     I
Sbjct:   167 VGLNQLCDIEIDKINKPDLPLASGNLSFRNVVIITASSLILGLGFAWIVGSWPLFWTVFI 226

Query:   124 WCIVGGAYSIDLPPLLRWKGNPLMAAVTIISMNGLLLLFPFFIHFQKIVLGNPVAFTKPV 183
              C+   AY++DLP LLRWK  P++ A++ I+   +     FF+H Q  V   P  F +P+
Sbjct:   227 CCMFAAAYNVDLP-LLRWKKYPVLTAISFIANVAVTRSLGFFLHMQTCVFKRPTTFPRPL 285

Query:   184 LFTAAYMVIWNAAIAFVK 201
             +F  A + I+   IA  K
Sbjct:   286 IFCTAIVSIYAIVIALFK 303

GO:0004659 "prenyltransferase activity" evidence=IDA

GO:0009507 "chloroplast" evidence=IDA

UNIPROTKB|B1B3P3 N8DT-1 "Naringenin 8-dimethylallyltransferase 1, chloroplastic" [Sophora flavescens (taxid:49840)]

 Score = 258 (95.9 bits), Expect = 6.1e-22, P = 6.1e-22
 Identities = 61/198 (30%), Positives = 91/198 (45%)

Query:     4 LNKKCDAFYRLTRPYSCXXXXXXXXXXXXXXXXXXADFTPKLIIEAFKCMVPXXXXXXXX 63
             +N   D FY+  RPY+                   +D +    I   + +V         
Sbjct:   110 VNDALDIFYKFCRPYAMFTIVLGATFKSLVAVEKLSDLSLAFFIGWLQVVVAVICIHIFG 169

Query:    64 XXXXQLADVHIDKVNKPYLPLACGDFSMGEGLAITIASPLMAVAMGIMLRSPPLVIGFII 123
                 QL D+ IDK+NKP LPLA G  S    + IT +S ++ +    ++ S PL     I
Sbjct:   170 VGLNQLCDIEIDKINKPDLPLASGKLSFRNVVIITASSLILGLGFAWIVDSWPLFWTVFI 229

Query:   124 WCIVGGAYSIDLPPLLRWKGNPLMAAVTIISMNGLLLLFPFFIHFQKIVLGNPVAFTKPV 183
              C+V  AY++DLP LLRWK  P++ A+  I+   +     FF+H Q  V   P  F +P+
Sbjct:   230 SCMVASAYNVDLP-LLRWKKYPVLTAINFIADVAVTRSLGFFLHMQTCVFKRPTTFPRPL 288

Query:   184 LFTAAYMVIWNAAIAFVK 201
             +F  A + I+   IA  K
Sbjct:   289 IFCTAIVSIYAIVIALFK 306

GO:0004659 "prenyltransferase activity" evidence=IDA

GO:0009507 "chloroplast" evidence=IDA

TAIR|locus:4010713740 HST "homogentisate prenyltransferase" [Arabidopsis thaliana (taxid:3702)]

 Score = 169 (64.5 bits), Expect = 4.5e-12, P = 4.5e-12
 Identities = 43/135 (31%), Positives = 70/135 (51%)

Query:    68 QLADVHIDKVNKPYLPLACGDFSMGEGLAITIASPLMAVAMGIMLRSPPLVIG-FIIWCI 126
             Q+ D+ IDKVNKPYLP+A GD S+     + I   +  + + +     P +   + +   
Sbjct:   159 QIYDIGIDKVNKPYLPIAAGDLSVQSAWLLVIFFAIAGLLV-VGFNFGPFITSLYSLGLF 217

Query:   127 VGGAYSIDLPPLLRWKGNPLMAAVTIISMNGLLLLFPFFIHFQKIVLGNPVAFTKPVLFT 186
             +G  YS+  PPL R K  P+ A + I ++ G LL F  + H  +  LG P  ++ PV F 
Sbjct:   218 LGTIYSV--PPL-RMKRFPVAAFLIIATVRGFLLNFGVY-HATRAALGLPFQWSAPVAFI 273

Query:   187 AAYMVIWNAAIAFVK 201
              +++ ++   IA  K
Sbjct:   274 TSFVTLFALVIAITK 288


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.330   0.143   0.456    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      208       178   0.00086  109 3  11 22  0.45    31
                                                     31  0.39    35


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  4
  No. of states in DFA:  590 (63 KB)
  Total size of DFA:  154 KB (2092 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  14.73u 0.19s 14.92t   Elapsed:  00:00:01
  Total cpu time:  14.73u 0.19s 14.92t   Elapsed:  00:00:01
  Start:  Fri May 10 23:19:18 2013   End:  Fri May 10 23:19:19 2013

GO:0004161 "dimethylallyltranstransferase activity" evidence=NAS

GO:0004659 "prenyltransferase activity" evidence=IEA

GO:0005739 "mitochondrion" evidence=ISM

GO:0016021 "integral to membrane" evidence=IEA

GO:0010236 "plastoquinone biosynthetic process" evidence=IMP

GO:0010355 "homogentisate farnesyltransferase activity" evidence=IDA

GO:0010356 "homogentisate geranylgeranyltransferase activity" evidence=IDA

GO:0010357 "homogentisate solanesyltransferase activity" evidence=IDA

GO:0009941 "chloroplast envelope" evidence=IDA

GO:0009536 "plastid" evidence=IDA

GO:0016117 "carotenoid biosynthetic process" evidence=IMP

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
3rd Layer	2.5.1	LOW CONFIDENCE prediction!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	208
PLN02878	280	PLN02878, PLN02878, homogentisate phytyltransferas	3e-56
PRK12887	308	PRK12887, ubiA, tocopherol phytyltransferase; Revi	3e-25
pfam01040	259	pfam01040, UbiA, UbiA prenyltransferase family	3e-06
COG0382	289	COG0382, UbiA, 4-hydroxybenzoate polyprenyltransfe	1e-05
PRK12884	279	PRK12884, ubiA, prenyltransferase; Reviewed	8e-05
TIGR01476	283	TIGR01476, chlor_syn_BchG, bacteriochlorophyll/chl	9e-05
PRK12882	276	PRK12882, ubiA, prenyltransferase; Reviewed	8e-04
PRK09573	279	PRK09573, PRK09573, (S)-2,3-di-O-geranylgeranylgly	0.002

>gnl|CDD|178466 PLN02878, PLN02878, homogentisate phytyltransferase

 Score =  179 bits (455), Expect = 3e-56
 Identities = 75/175 (42%), Positives = 113/175 (64%), Gaps = 1/175 (0%)

Query: 27  LLSVSLLPLQSPADFTPKLIIEAFKCMVPAIMMNNYANAINQLADVHIDKVNKPYLPLAC 86
           + SVSLL ++S +DF+P       + +VPA++MN Y   +NQL D+ IDKVNKPYLPLA 
Sbjct: 3   ITSVSLLAVESLSDFSPLFFTGLLEALVPALLMNIYIVGLNQLYDIEIDKVNKPYLPLAS 62

Query: 87  GDFSMGEGLAITIASPLMAVAMGIMLRSPPLVIGFIIWCIVGGAYSIDLPPLLRWKGNPL 146
           G+FS+  G+AI  +  +M+  MG ++ S PL     +  ++G AYSI+L PLLRWK + +
Sbjct: 63  GEFSVATGVAIVTSFAIMSFGMGWIVGSWPLFWALFVSFVLGTAYSINL-PLLRWKRSAV 121

Query: 147 MAAVTIISMNGLLLLFPFFIHFQKIVLGNPVAFTKPVLFTAAYMVIWNAAIAFVK 201
            AA  I+++  +++   FF+H Q  VLG P  FT+P++F  A+M  ++  IA  K
Sbjct: 122 AAASCILAVRAVVVQLAFFLHMQTHVLGRPAVFTRPLIFATAFMCFFSVVIALFK 176

Length = 280

>gnl|CDD|183813 PRK12887, ubiA, tocopherol phytyltransferase; Reviewed

 Score = 99.7 bits (249), Expect = 3e-25
 Identities = 61/194 (31%), Positives = 108/194 (55%), Gaps = 8/194 (4%)

Query: 10  AFYRLTRPYSCVSIIAALLSVSLLPLQSPADFTPKL--IIEAFKCMVPAIMMNNYANAIN 67
           A ++ +RP++ +    ++L + L+ + + +  T  L  +       +  +  N Y   +N
Sbjct: 15  ALWKFSRPHTIIGTSLSVLGLYLIAI-AASSNTIALANLGLLLGAWIACLCGNVYIVGLN 73

Query: 68  QLADVHIDKVNKPYLPLACGDFSMGEGLAITIASPLMAVAMGIMLRSPPLVIGFIIWCIV 127
           QL D+ ID++NKP+LPLA G+FS  +G  I I + ++A+ +  +L  P L+I   I  ++
Sbjct: 74  QLTDIEIDRINKPHLPLAAGEFSRRQGQRIVIITGILALILAALL-GPWLLITVGISLLI 132

Query: 128 GGAYSIDLPPLLRWKGNPLMAAVTIISMNGLLLLFPFFIHFQKIVLGNPVAFTKPVLFTA 187
           G AYS  LPP +R K  PL+AA+ I ++ G+++    F+HFQ  +LG  V     V    
Sbjct: 133 GTAYS--LPP-IRLKRFPLLAALCIFTVRGVIVNLGLFLHFQW-LLGGSVLIPPTVWLLT 188

Query: 188 AYMVIWNAAIAFVK 201
            +++++  AIA  K
Sbjct: 189 LFVLVFTFAIAIFK 202

Length = 308

>gnl|CDD|216260 pfam01040, UbiA, UbiA prenyltransferase family

 Score = 46.3 bits (110), Expect = 3e-06
 Identities = 35/143 (24%), Positives = 62/143 (43%), Gaps = 8/143 (5%)

Query: 56  AIMMNNYANAINQLADVHIDKV--NKPYLPLACGDFSMGEGLAITIASPLMAVAMGIMLR 113
            +++    N +N   D  ID    NKP  PL  G  S  E L + +A  L+ + + ++L 
Sbjct: 32  LLLLQAAGNVLNDYFDYEIDADNPNKPDRPLPSGRISPREALLLGLALLLLGLLLALLLG 91

Query: 114 SPPLVIGFIIWCIVGGAYSIDLPPLLRWKGNPLMAAVTIISMNGLLLLFPFFIHFQKIVL 173
              L++G +   ++G  YS    P LR K  PL+  + +    GLL+L   +      + 
Sbjct: 92  PLLLLLGLLGL-LLGLLYS----PPLRLKRRPLLGELVVGLAFGLLILLGAYA-VGGDIP 145

Query: 174 GNPVAFTKPVLFTAAYMVIWNAA 196
              +    PV   +  +++ N  
Sbjct: 146 SPLLLLALPVFLLSLAILLTNDI 168

Length = 259

>gnl|CDD|223459 COG0382, UbiA, 4-hydroxybenzoate polyprenyltransferase and related prenyltransferases [Coenzyme metabolism]

 Score = 44.6 bits (106), Expect = 1e-05
 Identities = 29/139 (20%), Positives = 52/139 (37%), Gaps = 10/139 (7%)

Query: 56  AIMMNNYANAINQLADVHIDKVNKP--YLPLACGDFSMGEGLAITIASPLMAVAMGIMLR 113
             +  +    IN LAD  ID++N      PL  G  S+ E L + I   L+ +A+ ++L 
Sbjct: 56  FFLARSAGYVINDLADREIDRINPRTKNRPLPSGRVSVKEALLLAILLLLLGLALALLLN 115

Query: 114 SPPLVIGFIIWCIVGGAYSIDLPPLLRWKGNPLMAAVTIISMNGLLLLFPFFIHFQKIVL 173
               ++      ++  AY          K    +  + +    GL  L         + L
Sbjct: 116 PLAFLLSL-AALVLALAY-------PFLKRFTFLPQLVLGLAFGLGALAGAAAVGGSLPL 167

Query: 174 GNPVAFTKPVLFTAAYMVI 192
              +     +L+T  Y +I
Sbjct: 168 LAWLLLLAAILWTLGYDII 186

Length = 289

>gnl|CDD|183812 PRK12884, ubiA, prenyltransferase; Reviewed

 Score = 41.9 bits (99), Expect = 8e-05
 Identities = 29/134 (21%), Positives = 57/134 (42%), Gaps = 17/134 (12%)

Query: 7   KCDAFYRLTRP-----YSCVSIIAALLSVSLLPLQSPADFTPKLIIEAFKCMVPAIMMNN 61
           K  A+  L RP          ++ A++++  LPL            EA    + A   + 
Sbjct: 3   KMKAYLELLRPEHGLMAGIAVVLGAIIALGGLPL-----------DEALLGFLTAFFASG 51

Query: 62  YANAINQLADVHIDKVNKPYLPLACGDFSMGEGLAITIASPLMAVAMGIMLRSPPLVIGF 121
            ANA+N   D  +D++N+P  P+  G  S  E L + I   ++ +    ++     ++  
Sbjct: 52  SANALNDYFDYEVDRINRPDRPIPSGRISRREALLLAILLFILGLIAAYLISPLAFLVVI 111

Query: 122 IIWCIVGGAYSIDL 135
           ++  ++G  Y+  L
Sbjct: 112 LVS-VLGILYNWKL 124

Length = 279

>gnl|CDD|130541 TIGR01476, chlor_syn_BchG, bacteriochlorophyll/chlorophyll synthetase

 Score = 42.1 bits (99), Expect = 9e-05
 Identities = 21/96 (21%), Positives = 42/96 (43%), Gaps = 6/96 (6%)

Query: 58  MMNNYANAINQLADVHIDKVNKPYLPLACGDFSMGEGLAITIASPLMAVAMGIMLRSPPL 117
           +   ++ +IN   D  +D +N+P  P+  G  S+ E     +   +  + + ++L    L
Sbjct: 49  LGTGFSQSINDYFDRDVDAINEPQRPIPSGIISLREVRWNWLVLTVAGLLVALVL-GNWL 107

Query: 118 VIGFIIWCIVGGAYSIDLPPLLR----WKGNPLMAA 149
           ++ F +  IV  A    +PP+      W G P +  
Sbjct: 108 IVLFTVVGIV-LAVIYSMPPIKLKRNGWLGPPAVGL 142

This model describes a subfamily of a large family of polyprenyltransferases (pfam01040) that also includes 4-hydroxybenzoate octaprenyltransferase and protoheme IX farnesyltransferase (heme O synthase). Members of this family are found exclusively in photosynthetic organisms, including a single copy in Arabidopsis thaliana [Biosynthesis of cofactors, prosthetic groups, and carriers, Chlorophyll and bacteriochlorphyll]. Length = 283

>gnl|CDD|183811 PRK12882, ubiA, prenyltransferase; Reviewed

 Score = 39.2 bits (92), Expect = 8e-04
 Identities = 29/118 (24%), Positives = 43/118 (36%), Gaps = 15/118 (12%)

Query: 10  AFYRLTRPYSCV-----SIIAALLSVSLLPLQSPADFTPKLIIEAFKCMVPAIMMNNYAN 64
            +  LTRP + V     + I A ++  +L   S                    +     N
Sbjct: 6   GYLELTRPVNAVVAGVAAFIGAFIAGGILSSPSLTGLA----------FAAVFLATGAGN 55

Query: 65  AINQLADVHIDKVNKPYLPLACGDFSMGEGLAITIASPLMAVAMGIMLRSPPLVIGFI 122
           AIN   D  ID++N+P  P+  G  S    LA +I      VA+  +L    L I   
Sbjct: 56  AINDYFDREIDRINRPDRPIPSGAVSPRGALAFSILLFAAGVALAFLLPPLCLAIALF 113

Length = 276

>gnl|CDD|181963 PRK09573, PRK09573, (S)-2,3-di-O-geranylgeranylglyceryl phosphate synthase; Reviewed

 Score = 38.0 bits (89), Expect = 0.002
 Identities = 19/62 (30%), Positives = 30/62 (48%), Gaps = 4/62 (6%)

Query: 62  YANAINQLADVHIDKVNKPYLPLACGDFSMGEGLAITIASPLMAVAMGIMLRSPPLVIGF 121
             N IN + D+ IDK+NKP  P+  G  S+ E    +I        +G++L     +  F
Sbjct: 52  GGNVINDIYDIEIDKINKPERPIPSGRISLKEAKIFSIT----LFIVGLILSIFINIYAF 107

Query: 122 II 123
           +I
Sbjct: 108 LI 109

Length = 279

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	208
PLN02878	280	homogentisate phytyltransferase	100.0
PRK12887	308	ubiA tocopherol phytyltransferase; Reviewed	100.0
TIGR01476	283	chlor_syn_BchG bacteriochlorophyll/chlorophyll syn	99.98
PRK09573	279	(S)-2,3-di-O-geranylgeranylglyceryl phosphate synt	99.98
PRK07566	314	bacteriochlorophyll/chlorophyll a synthase; Review	99.98
PLN00012	375	chlorophyll synthetase; Provisional	99.97
PRK12874	291	ubiA prenyltransferase; Reviewed	99.97
TIGR02056	306	ChlG chlorophyll synthase, ChlG. This model repres	99.97
PRK12882	276	ubiA prenyltransferase; Reviewed	99.97
PRK12392	331	bacteriochlorophyll c synthase; Provisional	99.97
PRK12884	279	ubiA prenyltransferase; Reviewed	99.97
PRK12883	277	ubiA prenyltransferase UbiA-like protein; Reviewed	99.97
PRK13106	300	ubiA prenyltransferase; Reviewed	99.97
PRK12886	291	ubiA prenyltransferase; Reviewed	99.97
TIGR01475	282	ubiA_other putative 4-hydroxybenzoate polyprenyltr	99.96
PRK12895	286	ubiA prenyltransferase; Reviewed	99.96
PRK12869	279	ubiA protoheme IX farnesyltransferase; Reviewed	99.96
COG0382	289	UbiA 4-hydroxybenzoate polyprenyltransferase and r	99.96
PRK12847	285	ubiA 4-hydroxybenzoate polyprenyltransferase; Revi	99.96
PRK12870	290	ubiA 4-hydroxybenzoate polyprenyltransferase; Revi	99.96
PRK05951	296	ubiA prenyltransferase; Reviewed	99.96
PRK04375	296	protoheme IX farnesyltransferase; Provisional	99.96
PRK13362	306	protoheme IX farnesyltransferase; Provisional	99.95
PRK12888	284	ubiA prenyltransferase; Reviewed	99.95
PRK12848	282	ubiA 4-hydroxybenzoate octaprenyltransferase; Revi	99.95
PRK06080	293	1,4-dihydroxy-2-naphthoate octaprenyltransferase;	99.95
PRK12324	295	phosphoribose diphosphate:decaprenyl-phosphate pho	99.95
PRK13387	317	1,4-dihydroxy-2-naphthoate octaprenyltransferase;	99.95
TIGR01473	280	cyoE_ctaB protoheme IX farnesyltransferase. This m	99.95
PRK12878	314	ubiA 4-hydroxybenzoate polyprenyltransferase; Revi	99.94
PRK13595	292	ubiA prenyltransferase; Provisional	99.94
TIGR01474	281	ubiA_proteo 4-hydroxybenzoate polyprenyl transfera	99.94
PRK08238	479	hypothetical protein; Validated	99.94
PRK12876	300	ubiA prenyltransferase; Reviewed	99.94
PLN02809	289	4-hydroxybenzoate nonaprenyltransferase	99.94
COG0109	304	CyoE Polyprenyltransferase (cytochrome oxidase ass	99.93
PRK07419	304	1,4-dihydroxy-2-naphthoate octaprenyltransferase;	99.93
TIGR00751	284	menA 1,4-dihydroxy-2-naphthoate octaprenyltransfer	99.93
PRK12873	294	ubiA prenyltransferase; Reviewed	99.93
PRK13592	299	ubiA prenyltransferase; Provisional	99.92
PLN02922	315	prenyltransferase	99.92
PRK12871	297	ubiA prenyltransferase; Reviewed	99.91
COG1575	303	MenA 1,4-dihydroxy-2-naphthoate octaprenyltransfer	99.91
PLN02776	341	prenyltransferase	99.91
TIGR02235	285	menA_cyano-plnt 1,4-dihydroxy-2-naphthoate phytylt	99.9
PRK13105	282	ubiA prenyltransferase; Reviewed	99.89
PF01040	257	UbiA: UbiA prenyltransferase family; InterPro: IPR	99.88
PRK12872	285	ubiA prenyltransferase; Reviewed	99.87
PRK12875	282	ubiA prenyltransferase; Reviewed	99.86
PRK13591	307	ubiA prenyltransferase; Provisional	99.84
KOG1381	353	consensus Para-hydroxybenzoate-polyprenyl transfer	99.65
KOG1380	409	consensus Heme A farnesyltransferase [Coenzyme tra	99.48
KOG4581	359	consensus Predicted membrane protein [Function unk	98.74
PRK12872	285	ubiA prenyltransferase; Reviewed	94.38
PRK13591	307	ubiA prenyltransferase; Provisional	94.2
PRK13387	317	1,4-dihydroxy-2-naphthoate octaprenyltransferase;	94.14
TIGR01475	282	ubiA_other putative 4-hydroxybenzoate polyprenyltr	93.29
PRK07419	304	1,4-dihydroxy-2-naphthoate octaprenyltransferase;	93.29
TIGR01474	281	ubiA_proteo 4-hydroxybenzoate polyprenyl transfera	93.11
PLN02922	315	prenyltransferase	92.6
PRK13106	300	ubiA prenyltransferase; Reviewed	92.33
PLN00012	375	chlorophyll synthetase; Provisional	92.26
COG1575	303	MenA 1,4-dihydroxy-2-naphthoate octaprenyltransfer	91.88
PRK12875	282	ubiA prenyltransferase; Reviewed	91.8
PRK13105	282	ubiA prenyltransferase; Reviewed	91.68
TIGR02235	285	menA_cyano-plnt 1,4-dihydroxy-2-naphthoate phytylt	91.53
PRK09573	279	(S)-2,3-di-O-geranylgeranylglyceryl phosphate synt	91.36
PRK07566	314	bacteriochlorophyll/chlorophyll a synthase; Review	91.23
PRK12886	291	ubiA prenyltransferase; Reviewed	90.82
PRK12392	331	bacteriochlorophyll c synthase; Provisional	90.81
TIGR02056	306	ChlG chlorophyll synthase, ChlG. This model repres	90.8
PRK06080	293	1,4-dihydroxy-2-naphthoate octaprenyltransferase;	90.5
PRK12884	279	ubiA prenyltransferase; Reviewed	89.42
TIGR01476	283	chlor_syn_BchG bacteriochlorophyll/chlorophyll syn	89.36
PRK12847	285	ubiA 4-hydroxybenzoate polyprenyltransferase; Revi	89.29
PRK12848	282	ubiA 4-hydroxybenzoate octaprenyltransferase; Revi	88.5
PRK12888	284	ubiA prenyltransferase; Reviewed	88.47
PRK12871	297	ubiA prenyltransferase; Reviewed	87.83
PRK05951	296	ubiA prenyltransferase; Reviewed	87.67
PRK11383	145	hypothetical protein; Provisional	87.62
PRK12882	276	ubiA prenyltransferase; Reviewed	87.03
PRK12883	277	ubiA prenyltransferase UbiA-like protein; Reviewed	86.52
PRK12870	290	ubiA 4-hydroxybenzoate polyprenyltransferase; Revi	86.33
COG0382	289	UbiA 4-hydroxybenzoate polyprenyltransferase and r	85.62
TIGR00751	284	menA 1,4-dihydroxy-2-naphthoate octaprenyltransfer	85.45
PRK12887	308	ubiA tocopherol phytyltransferase; Reviewed	83.62
PRK12874	291	ubiA prenyltransferase; Reviewed	83.53

>PLN02878 homogentisate phytyltransferase

Probab=100.00  E-value=3.7e-35  Score=246.13  Aligned_cols=176  Identities=41%  Similarity=0.760  Sum_probs=156.8

Q ss_pred             HHhcCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhccccCCCCCcccCCccCHHHHHHHHHHHHHHHHHHHH
Q 028504           31 SLLPLQSPADFTPKLIIEAFKCMVPAIMMNNYANAINQLADVHIDKVNKPYLPLACGDFSMGEGLAITIASPLMAVAMGI  110 (208)
Q Consensus        31 ~~la~~~~~~~~~~~~~~~l~~~l~~~l~~~a~~~iNd~~D~~~D~~~~~~RPl~sG~is~~~a~~~~~~l~~~~~~l~~  110 (208)
                      ++++.+..++.++..+..++.++++.++++.....+|||+|+|+||+|||+||+|||++|+++|+.+...+.++|+.+++
T Consensus         7 ~l~a~~~~~~~~~~~~~~~l~~~~~~l~~niyivglNd~~D~EIDkINkP~rPIpSG~iS~~~a~~~~~~~~~lg~~la~   86 (280)
T PLN02878          7 SLLAVESLSDFSPLFFTGLLEALVPALLMNIYIVGLNQLYDIEIDKVNKPYLPLASGEFSVATGVAIVTSFAIMSFGMGW   86 (280)
T ss_pred             hHHHhhccccccHHHHHHHHHHHHHHHhhhhheechhhhhhhcccccCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHH
Confidence            34454444455555566777888999999999999999999999999999999999999999999999999999999999


Q ss_pred             HhhHHHHHHHHHHHHHHhHhccCCCCCccccccCchhHHHHHHHHHhHHHHHHHHHHHHHHHhcCCccccHHHHHHHHHH
Q 028504          111 MLRSPPLVIGFIIWCIVGGAYSIDLPPLLRWKGNPLMAAVTIISMNGLLLLFPFFIHFQKIVLGNPVAFTKPVLFTAAYM  190 (208)
Q Consensus       111 ~~~~~~~~~~~~~~~~~~~~Ys~~~P~p~~lK~~~~~~~~~v~~~~g~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~  190 (208)
                      .+|++++.+++..+++++++||..+| |+|+||.+++++.|+...++....+|+|.++++..+|++..++.++++...++
T Consensus        87 ~~g~~~l~~al~~~~~lg~~YS~~lp-~lr~k~~~~~aa~~i~~vr~~~v~l~~~~h~~~~~~g~~~~~~~~~~~~~~f~  165 (280)
T PLN02878         87 IVGSWPLFWALFVSFVLGTAYSINLP-LLRWKRSAVAAASCILAVRAVVVQLAFFLHMQTHVLGRPAVFTRPLIFATAFM  165 (280)
T ss_pred             HHChHHHHHHHHHHHHHHHHHHccCC-CcccHHHHHHHHHHHHHHHHHHhhhhHHHhHHHHHhCCccccchhHHHHHHHH
Confidence            99998887777777679999997768 99999999999999999999889999999999999998877888888888899


Q ss_pred             HHHHHHHHHhhcCCccc
Q 028504          191 VIWNAAIAFVKVTNSEI  207 (208)
Q Consensus       191 ~~~~~~~~~~k~~~D~~  207 (208)
                      ++++.+++++||+||+|
T Consensus       166 ~~f~~~i~i~KDi~Die  182 (280)
T PLN02878        166 CFFSVVIALFKDIPDVE  182 (280)
T ss_pred             HHHHHHHHHHhhCcCch
Confidence            99999999999999998

>PRK12887 ubiA tocopherol phytyltransferase; Reviewed

Probab=100.00  E-value=1.7e-34  Score=248.31  Aligned_cols=199  Identities=29%  Similarity=0.493  Sum_probs=162.2

Q ss_pred             hhHHHHHHHHHhhhchhhHHHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHH----hhhhhhhhcccc
Q 028504            2 QVLNKKCDAFYRLTRPYSCVSIIAALLSVSLLPLQSPADFTPKLIIEAFKCMVPAIMMNNYANA----INQLADVHIDKV   77 (208)
Q Consensus         2 ~~~~~~~~~~l~l~Rp~~~~~~~~~~~~g~~la~~~~~~~~~~~~~~~l~~~l~~~l~~~a~~~----iNd~~D~~~D~~   77 (208)
                      |+.++.+++|+|++|||+..++.++++.+.+++.....+ .+...  .+...++.+.++.++|+    +|||+|+|+||+
T Consensus         7 ~~~~~~l~~~~~l~Rp~t~igt~l~~~~~~l~a~~~~~~-~~~~~--~~~~~l~~~~~~~~~nv~i~~iNd~~D~~iD~i   83 (308)
T PRK12887          7 QPMTSWLYALWKFSRPHTIIGTSLSVLGLYLIAIAASSN-TIALA--NLGLLLGAWIACLCGNVYIVGLNQLTDIEIDRI   83 (308)
T ss_pred             hhhhHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhccc-hhhHH--HHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHhc
Confidence            445667899999999999999999998887766322121 11110  12233455566666666    999999999999


Q ss_pred             CCCCCcccCCccCHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhHhccCCCCCccccccCchhHHHHHHHHHh
Q 028504           78 NKPYLPLACGDFSMGEGLAITIASPLMAVAMGIMLRSPPLVIGFIIWCIVGGAYSIDLPPLLRWKGNPLMAAVTIISMNG  157 (208)
Q Consensus        78 ~~~~RPl~sG~is~~~a~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~Ys~~~P~p~~lK~~~~~~~~~v~~~~g  157 (208)
                      |||+||++||++|+++++.+..++.++|+.+++.+|++.+.++.+.. +++++||.  | |+|+||+|..++++++...|
T Consensus        84 nkp~rPiasG~ls~~~a~~~~~~~~~lal~la~~~~~~~~~~~~~~~-~lg~~Ys~--p-P~rlKr~~~~~~~~i~~~~g  159 (308)
T PRK12887         84 NKPHLPLAAGEFSRRQGQRIVIITGILALILAALLGPWLLITVGISL-LIGTAYSL--P-PIRLKRFPLLAALCIFTVRG  159 (308)
T ss_pred             CCCCCCcCCcccCHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH-HHHHHHcC--C-chhhcccchhHHHHHHHHHH
Confidence            99999999999999999999999999999999999988877776655 69999999  8 99999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHhcCCccccHHHHHHHHHHHHHHHHHHHhhcCCcccC
Q 028504          158 LLLLFPFFIHFQKIVLGNPVAFTKPVLFTAAYMVIWNAAIAFVKVTNSEIE  208 (208)
Q Consensus       158 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~D~~~  208 (208)
                      ..+.+|.+.++++. .+.+..++...++...++.++++++++.||++|+|+
T Consensus       160 ~i~~~g~~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~~l~~di~D~eg  209 (308)
T PRK12887        160 VIVNLGLFLHFQWL-LGGSVLIPPTVWLLTLFVLVFTFAIAIFKDIPDMEG  209 (308)
T ss_pred             HHHHHHHHHHHHHH-HhccccCcHHHHHHHHHHHHHHHHHHHHHhccchhh
Confidence            99999998875543 344445677777888899999999999999999985

>TIGR01476 chlor_syn_BchG bacteriochlorophyll/chlorophyll synthetase

Probab=99.98  E-value=2.5e-31  Score=226.45  Aligned_cols=186  Identities=15%  Similarity=0.126  Sum_probs=146.6

Q ss_pred             HHHHhhhchhhHHHHHHHHHHHHHhcCCCCCC-CCHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhccccCCCCCcccCC
Q 028504            9 DAFYRLTRPYSCVSIIAALLSVSLLPLQSPAD-FTPKLIIEAFKCMVPAIMMNNYANAINQLADVHIDKVNKPYLPLACG   87 (208)
Q Consensus         9 ~~~l~l~Rp~~~~~~~~~~~~g~~la~~~~~~-~~~~~~~~~l~~~l~~~l~~~a~~~iNd~~D~~~D~~~~~~RPl~sG   87 (208)
                      |+|++++||+++..++.++++|..++.....+ +++  ...++.+++++.+.++++|++|||+|+|+|++|+|+||+++|
T Consensus         1 ~~~~~l~rp~t~~~~~~~~~~G~~~a~~~~~~~~~~--~~~ll~~~~~~~l~~~~~n~~Nd~~D~~~D~~~~~~Rpi~~G   78 (283)
T TIGR01476         1 RAHIELMKPVTWIPPIWACFCGALASGYERGFPEHW--WLMLLGMLMAGPLGTGFSQSINDYFDRDVDAINEPQRPIPSG   78 (283)
T ss_pred             CceeEecCCceehhHHHHHHHHHHhccCCCCcchhH--HHHHHHHHHHHHHHHHHHHHHHhHhhhCcccCCCCCCCCCCC
Confidence            46899999999999999999999887432222 222  212233557889999999999999999999999999999999


Q ss_pred             ccCHHHHHHHHHHHHHHHHHHHHHhhHHH-HHHHHHHHHHHhHhccCCCCCccccccCchhHHHHHHHHHhHHHHHHHHH
Q 028504           88 DFSMGEGLAITIASPLMAVAMGIMLRSPP-LVIGFIIWCIVGGAYSIDLPPLLRWKGNPLMAAVTIISMNGLLLLFPFFI  166 (208)
Q Consensus        88 ~is~~~a~~~~~~l~~~~~~l~~~~~~~~-~~~~~~~~~~~~~~Ys~~~P~p~~lK~~~~~~~~~v~~~~g~~~~~g~~~  166 (208)
                      ++|+++++.++..+..+++.++..++.+. ..++.++. +.++.||.  | |+++||++.+|++.++..++.....+.+.
T Consensus        79 ~is~~~a~~~~~~~~~~~~~l~~~l~~~~~~~l~~~~~-~~~~~Ys~--~-p~~lk~~~~~g~~~vg~~~~~~~~~~~~~  154 (283)
T TIGR01476        79 IISLREVRWNWLVLTVAGLLVALVLGNWLIVLFTVVGI-VLAVIYSM--P-PIKLKRNGWLGPPAVGLSYEGLPWMAGHA  154 (283)
T ss_pred             CcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHhheecC--c-hhhhccCCCccHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999988887766 55554444 57999999  7 99999999999999888766544333332


Q ss_pred             HHHHHHhcCCccccHHHHHHHHHHHHHHHHHHHhhcCCcccC
Q 028504          167 HFQKIVLGNPVAFTKPVLFTAAYMVIWNAAIAFVKVTNSEIE  208 (208)
Q Consensus       167 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~D~~~  208 (208)
                      .     .+ +  .+...++.....++++.+++++||+||+|+
T Consensus       155 ~-----~~-~--~~~~~~~~~~~~~l~~~~i~~~nd~~D~~~  188 (283)
T TIGR01476       155 I-----FA-P--LTWQSVVVALIYSLGAHGIMTLNDFKSVEG  188 (283)
T ss_pred             H-----hC-C--CCHHHHHHHHHHHHHHHHHHHHHhccchhh
Confidence            2     11 1  445555566777888999999999999986

This model describes a subfamily of a large family of polyprenyltransferases (pfam01040) that also includes 4-hydroxybenzoate octaprenyltransferase and protoheme IX farnesyltransferase (heme O synthase). Members of this family are found exclusively in photosynthetic organisms, including a single copy in Arabidopsis thaliana.

>PRK09573 (S)-2,3-di-O-geranylgeranylglyceryl phosphate synthase; Reviewed

Probab=99.98  E-value=5.9e-31  Score=223.78  Aligned_cols=180  Identities=18%  Similarity=0.263  Sum_probs=146.0

Q ss_pred             HHHHHHhhhchhhHHHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhccccCCCCCcccC
Q 028504            7 KCDAFYRLTRPYSCVSIIAALLSVSLLPLQSPADFTPKLIIEAFKCMVPAIMMNNYANAINQLADVHIDKVNKPYLPLAC   86 (208)
Q Consensus         7 ~~~~~l~l~Rp~~~~~~~~~~~~g~~la~~~~~~~~~~~~~~~l~~~l~~~l~~~a~~~iNd~~D~~~D~~~~~~RPl~s   86 (208)
                      ++++|+|++||+++..+.++++.|..++.+.  ..++.   ..++.+++++++++++|++|||+|+|+||+|+|+||+||
T Consensus         2 ~~~~~~~l~Rp~~~~~~~~~~~~g~~la~~~--~~~~~---~~~l~~l~~~l~~~~~~~iNd~~D~~iD~~~~~~Rpl~s   76 (279)
T PRK09573          2 SIKAYFELIRPKNCIGASIGAIIGYLIASNF--KIDLK---GIILAALVVFLVCAGGNVINDIYDIEIDKINKPERPIPS   76 (279)
T ss_pred             CHHHHHHHHhHhHHHHHHHHHHHHHHHHccC--CcchH---HHHHHHHHHHHHHHHHHHHHhhcccccccccCCCCCcCC
Confidence            3689999999999999999999998887542  22322   133456789999999999999999999999999999999


Q ss_pred             CccCHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhHhccCCCCCccccccCchhHHHHHHHHHhHHHHHHHHH
Q 028504           87 GDFSMGEGLAITIASPLMAVAMGIMLRSPPLVIGFIIWCIVGGAYSIDLPPLLRWKGNPLMAAVTIISMNGLLLLFPFFI  166 (208)
Q Consensus        87 G~is~~~a~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~Ys~~~P~p~~lK~~~~~~~~~v~~~~g~~~~~g~~~  166 (208)
                      |++|++|++.++..+.++++.++..+|+.+..++.++. ...+.||.      ++||++.+||+.++...|..+..|...
T Consensus        77 G~is~~~a~~~~~~l~~~~~~l~~~l~~~~~~l~~~~~-~~~~~Ys~------~lKr~~~~~~~~vg~~~G~~~~~g~~~  149 (279)
T PRK09573         77 GRISLKEAKIFSITLFIVGLILSIFINIYAFLIALLNS-ILLYLYAK------DLKKTGLIGNLIVAYLTGLSFIFGGLA  149 (279)
T ss_pred             CccCHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH-HHHHHHHH------HHhcCCcHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999998888887666 46889986      699999999999999999876666533


Q ss_pred             HHHHHHhcCCccccHHHHHHHHHHHHHHHHHHHhhcCCcccC
Q 028504          167 HFQKIVLGNPVAFTKPVLFTAAYMVIWNAAIAFVKVTNSEIE  208 (208)
Q Consensus       167 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~D~~~  208 (208)
                      . +.     .    .+.+++.....++..++++.||.+|+|+
T Consensus       150 ~-~~-----~----~~~~~l~~~~f~~~~~~~~~~~~~D~~~  181 (279)
T PRK09573        150 V-FN-----V----LRIIILFLCAFFSTWSREIVKDIEDIEG  181 (279)
T ss_pred             H-cc-----c----hHHHHHHHHHHHHHHHHHHHhhhhhhhh
Confidence            2 11     1    1222233444567778999999999985

>PRK07566 bacteriochlorophyll/chlorophyll a synthase; Reviewed

Probab=99.98  E-value=8.2e-31  Score=226.25  Aligned_cols=192  Identities=16%  Similarity=0.167  Sum_probs=151.5

Q ss_pred             HHHHHHHHhhhchhhHHHHHHHHHHHHHhcCCCCCCCCHHHHH-HHHHHHHHHHHHHHHHHHhhhhhhhhccccCCCCCc
Q 028504            5 NKKCDAFYRLTRPYSCVSIIAALLSVSLLPLQSPADFTPKLII-EAFKCMVPAIMMNNYANAINQLADVHIDKVNKPYLP   83 (208)
Q Consensus         5 ~~~~~~~l~l~Rp~~~~~~~~~~~~g~~la~~~~~~~~~~~~~-~~l~~~l~~~l~~~a~~~iNd~~D~~~D~~~~~~RP   83 (208)
                      ++++++|++++||+++..++++...|+..+..  .++...... ..+..++++.+.++++|++|||+|+|+||+|+|+||
T Consensus        24 ~~~~~~~~~l~RP~~~~~~~~~~~~g~~~~~~--~~~~~~~~~~~~l~~~l~~~l~~~~~~~~Nd~~D~~~D~~~~~~Rp  101 (314)
T PRK07566         24 TSIWKARLQLMKPITWFPPMWAFLCGAVSSGA--FGWTLENVLKLLAGMLLAGPLLCGTSQTLNDYFDREVDAINEPYRP  101 (314)
T ss_pred             chHHHHHHHHhCCcchHHHHHHHHHHHHHcCC--CCcchhHHHHHHHHHHHHHHHHHHHHHHHhhhhccCccccCCCCCC
Confidence            35789999999999999999988888775432  222221111 122345678889999999999999999999999999


Q ss_pred             ccCCccCHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhHhccCCCCCccccccCchhHHHHHHHHHhHHHHHH
Q 028504           84 LACGDFSMGEGLAITIASPLMAVAMGIMLRSPPLVIGFIIWCIVGGAYSIDLPPLLRWKGNPLMAAVTIISMNGLLLLFP  163 (208)
Q Consensus        84 l~sG~is~~~a~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~Ys~~~P~p~~lK~~~~~~~~~v~~~~g~~~~~g  163 (208)
                      ++||++|+++++.++.++..+++.+++.+|++...+++++. +.+++||.  | |+++||++.+||+.++..+|..+..+
T Consensus       102 l~sG~is~~~a~~~~~~l~~~~~~l~~~l~~~~~~l~l~~~-~~~~~Yt~--g-P~~lK~~~~~g~i~vg~~~g~~~~~~  177 (314)
T PRK07566        102 IPSGAISLRWVLYLIAVLTVLGLAVAYLLGPWVFLAALLGL-FLAWIYSA--P-PLRLKQNGWLGNYAVGLSYEGLPWWA  177 (314)
T ss_pred             CCCceeCHHHHHHHHHHHHHHHHHHHHHHChHHHHHHHHHH-HHHHHhcC--C-ccccccccchhhHHHHHHHHHHHHHH
Confidence            99999999999999999999999999989988887776655 47899999  6 89999999999999999887665555


Q ss_pred             HHHHHHHHHhcCCccccHHHHHHHHHHHHHHHHHHHhhcCCcccC
Q 028504          164 FFIHFQKIVLGNPVAFTKPVLFTAAYMVIWNAAIAFVKVTNSEIE  208 (208)
Q Consensus       164 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~D~~~  208 (208)
                      .+...++      ...+...++.....+++..++.++||++|+|+
T Consensus       178 g~~~~~~------~~~~~~~~l~~~~~~l~~~~~~~~~d~~D~e~  216 (314)
T PRK07566        178 GAAAFGA------GLPSWPIVILALLYSLGAHGIMTLNDFKSVEG  216 (314)
T ss_pred             HHHHhcc------CCCCHHHHHHHHHHHHHHHHHHHHHHHHHhHh
Confidence            4443221      12345555666777788889999999999985

>PLN00012 chlorophyll synthetase; Provisional

Probab=99.97  E-value=1.3e-30  Score=228.98  Aligned_cols=191  Identities=18%  Similarity=0.182  Sum_probs=146.0

Q ss_pred             HHHHHHHHHhhhchhhHHHHHHHHHHHHHhcCCCCCCCCHHH-HHHHHHHHHHHHHHHHHHHHhhhhhhhhccccCCCCC
Q 028504            4 LNKKCDAFYRLTRPYSCVSIIAALLSVSLLPLQSPADFTPKL-IIEAFKCMVPAIMMNNYANAINQLADVHIDKVNKPYL   82 (208)
Q Consensus         4 ~~~~~~~~l~l~Rp~~~~~~~~~~~~g~~la~~~~~~~~~~~-~~~~l~~~l~~~l~~~a~~~iNd~~D~~~D~~~~~~R   82 (208)
                      .++++|+|++++||+++..+++++++|+... ++ .++.... ....+..++++.++++++|++|||+|+|+|++|+|+|
T Consensus        81 ~~~~~k~~l~L~RP~t~~~~~~~v~~G~~~~-g~-~~~~~~~~~~~ll~~ll~~~L~~~~an~iNDy~D~~iD~~~~~~R  158 (375)
T PLN00012         81 ETDIWKIRLQLTKPVTWPPLVWGVLCGAAAS-GN-FHWTLEDVAKSIVCMLMSGPFLTGYTQTINDWYDREIDAINEPYR  158 (375)
T ss_pred             chHHHHHHHHHhCHHHHHHHHHHHHHHHHHc-CC-CCchhhhHHHHHHHHHHHHHHHHHHHHHHHCeecHhhhccCCCCC
Confidence            4578899999999999999999999998843 21 1222111 1112345678889999999999999999999999999


Q ss_pred             cccCCccCHHHHHHHHHHHHHHHHHHHHHh-------hHHHHHHHHHHHHHHhHhccCCCCCccccccCchhHHHHHHHH
Q 028504           83 PLACGDFSMGEGLAITIASPLMAVAMGIML-------RSPPLVIGFIIWCIVGGAYSIDLPPLLRWKGNPLMAAVTIISM  155 (208)
Q Consensus        83 Pl~sG~is~~~a~~~~~~l~~~~~~l~~~~-------~~~~~~~~~~~~~~~~~~Ys~~~P~p~~lK~~~~~~~~~v~~~  155 (208)
                      |+++|++|+++++..+..+..+++.+++++       |++.+++++++. +..++||.  | |+++||++++||+.++..
T Consensus       159 pi~sG~Is~~~al~~~~~l~~~~l~l~~~L~~~~~~~~~~~~~l~l~gi-~l~~~YS~--p-Pl~lKr~~~~G~v~lG~~  234 (375)
T PLN00012        159 PIPSGAISENEVITQIWVLLLGGLGLAYTLDVWAGHDFPIVFYLALGGS-LLSYIYSA--P-PLKLKQNGWIGNYALGAS  234 (375)
T ss_pred             CcCCCccCHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHH-HHhhhhcC--C-chhhhHhccHhHHHHHHH
Confidence            999999999999998888888777776554       344555555555 57999999  7 999999999999998888


Q ss_pred             HhHHHHHHHHHHHHHHHhcCCccccHHHHHHHHHHHHHHHHHHHhhcCCcccC
Q 028504          156 NGLLLLFPFFIHFQKIVLGNPVAFTKPVLFTAAYMVIWNAAIAFVKVTNSEIE  208 (208)
Q Consensus       156 ~g~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~D~~~  208 (208)
                      ++.++.++.+.     ..|   .++...+++..+.++++.+++++||++|+|+
T Consensus       235 ~~~lp~~~g~a-----~~g---~~s~~~illal~~~l~~lai~ivnd~~Die~  279 (375)
T PLN00012        235 YISLPWWAGQA-----LFG---TLTPDVVVLTLLYSIAGLGIAIVNDFKSIEG  279 (375)
T ss_pred             HHHHHHHHHHH-----HcC---CCCHHHHHHHHHHHHHHHHHHHHhhhcchhh
Confidence            87655444331     112   2445555566777889999999999999985

>PRK12874 ubiA prenyltransferase; Reviewed

Probab=99.97  E-value=3e-30  Score=220.48  Aligned_cols=189  Identities=19%  Similarity=0.194  Sum_probs=151.5

Q ss_pred             ChhHHHHHHHHHhhhchhhHHHHHHHHHHHHHhcCCC---CCCCCHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhcccc
Q 028504            1 MQVLNKKCDAFYRLTRPYSCVSIIAALLSVSLLPLQS---PADFTPKLIIEAFKCMVPAIMMNNYANAINQLADVHIDKV   77 (208)
Q Consensus         1 ~~~~~~~~~~~l~l~Rp~~~~~~~~~~~~g~~la~~~---~~~~~~~~~~~~l~~~l~~~l~~~a~~~iNd~~D~~~D~~   77 (208)
                      |||.++++|+|+|++||++...++...+.|.+++...   ....++.   ..++.++++.++++++|++|||+|+|+|++
T Consensus         1 ~~~~~~~l~~y~~l~r~~~~~~~l~~a~~g~~la~~~~~~~~~~~~~---~~~l~~l~~~l~~~a~~~~Nd~~DrdiD~~   77 (291)
T PRK12874          1 MKKFTKKLKDISELVVFKHSIFSLPFIFIAMIVASKQKNDTGWFGFK---LLILGILAAVSARNFAMAFNRLVDRDIDKD   77 (291)
T ss_pred             CchHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHhhhhccCCCCCHH---HHHHHHHHHHHHHHHHHHHHhhhhhccccC
Confidence            7899999999999999999999999999998887521   1123332   234556788999999999999999999999


Q ss_pred             CC--CCCcccCCccCHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhHhccCCCCCccccccCchhHHHHHHHH
Q 028504           78 NK--PYLPLACGDFSMGEGLAITIASPLMAVAMGIMLRSPPLVIGFIIWCIVGGAYSIDLPPLLRWKGNPLMAAVTIISM  155 (208)
Q Consensus        78 ~~--~~RPl~sG~is~~~a~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~Ys~~~P~p~~lK~~~~~~~~~v~~~  155 (208)
                      |+  |+||+|||++|++||+.++..+.++++.+++.+|+.+..+++... .+...|+.       +||++.++++..+..
T Consensus        78 ~~RT~~RPl~sG~is~~~a~~~~~~~~~~~~~~~~~~n~~~~~l~~~~~-~~~~~Y~~-------~KR~t~~~~~~~g~~  149 (291)
T PRK12874         78 NPRTANRPSVDGRISVKSMVLFIVLNALIFIGVSYFINPLAFKLSFPFL-IVLGGYSY-------FKRFSSLAHLVLGLS  149 (291)
T ss_pred             CCCCCCCCCCCCCcCHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH-HHHHHHhh-------hcccccccHHHHHHH
Confidence            86  799999999999999999999998888888888988887775444 57888975       899999999999998


Q ss_pred             HhHHHHHHHHHHHHHHHhcCCccccHHHHHHHHHHHHHHHHHHHhhcCCcccC
Q 028504          156 NGLLLLFPFFIHFQKIVLGNPVAFTKPVLFTAAYMVIWNAAIAFVKVTNSEIE  208 (208)
Q Consensus       156 ~g~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~D~~~  208 (208)
                      .|..+..|....      ++.  .+.+.+++.+.+.+|..+.++.|+++|+|+
T Consensus       150 ~~~~~l~G~~av------~g~--~~~~~~~l~~~~~~w~~~~~~~~a~~D~~~  194 (291)
T PRK12874        150 LGLAPIAGVVAV------LGE--IPLWSVFLALGVMFWVAGFDLLYSLQDMEF  194 (291)
T ss_pred             HHHHHHHHHHHH------cCC--CcHHHHHHHHHHHHHHHHHHHHHHhccHHH
Confidence            886665554322      222  233334455667899999999999999884

>TIGR02056 ChlG chlorophyll synthase, ChlG

Probab=99.97  E-value=3.5e-30  Score=221.58  Aligned_cols=189  Identities=19%  Similarity=0.240  Sum_probs=147.5

Q ss_pred             HHHHHHHHHhhhchhhHHHHHHHHHHHHHhcCCCCCCCCHHH---HHHHHHHHHHHHHHHHHHHHhhhhhhhhccccCCC
Q 028504            4 LNKKCDAFYRLTRPYSCVSIIAALLSVSLLPLQSPADFTPKL---IIEAFKCMVPAIMMNNYANAINQLADVHIDKVNKP   80 (208)
Q Consensus         4 ~~~~~~~~l~l~Rp~~~~~~~~~~~~g~~la~~~~~~~~~~~---~~~~l~~~l~~~l~~~a~~~iNd~~D~~~D~~~~~   80 (208)
                      .++++|+|+|++||+++..++++++.|...+ +   ++++..   ....+..++++.++++++|++|||+|+|+|++|+|
T Consensus        12 ~~~~~~~~~~l~RP~~~~~~~~~~~~G~~~~-~---~~~~~~~~~~~~ll~~ll~~~l~~~~~n~~NDy~D~d~D~~~~~   87 (306)
T TIGR02056        12 ETNIWKIRLQLMKPITWIPLIWGVVCGAAAS-G---NFHWSLEDVAKAALCMLLSGPCLTGYTQTINDFYDRDIDAINEP   87 (306)
T ss_pred             chhHHHHHHHHcChHhhHHHHHHHHHHHHHc-C---CCCcchhhHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhhccCCC
Confidence            3567899999999999999999999998754 2   232211   11122334677999999999999999999999999


Q ss_pred             CCcccCCccCHHHHHHHHHHHHHHHHHHHHHhh-------HHHHHHHHHHHHHHhHhccCCCCCccccccCchhHHHHHH
Q 028504           81 YLPLACGDFSMGEGLAITIASPLMAVAMGIMLR-------SPPLVIGFIIWCIVGGAYSIDLPPLLRWKGNPLMAAVTII  153 (208)
Q Consensus        81 ~RPl~sG~is~~~a~~~~~~l~~~~~~l~~~~~-------~~~~~~~~~~~~~~~~~Ys~~~P~p~~lK~~~~~~~~~v~  153 (208)
                      +||+++|++|+++++.++..+..+++.++.++.       ++.+.+++++. +.+++||.  | |+++||++.+|++.++
T Consensus        88 ~Rpi~~G~is~~~a~~~~~~l~~~~~~lg~~l~~~~~~~~~~~~~l~~~~~-~~~~~Yt~--g-P~~lk~~g~~G~i~vg  163 (306)
T TIGR02056        88 YRPIPSGAISEPEVITQIVLLFIAGIAIAFILDLWAGHEFPNVFVLALFGS-FIAFIYSA--P-PLKLKQNGWLGNFALG  163 (306)
T ss_pred             CCCCCCCccCHHHHHHHHHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHH-HHHHHHcC--C-hhhhhhcccHHHHHHH
Confidence            999999999999999999999999988877653       34555665554 57999999  7 8999999999999888


Q ss_pred             HHHhHHHHHHHHHHHHHHHhcCCccccHHHHHHHHHHHHHHHHHHHhhcCCcccC
Q 028504          154 SMNGLLLLFPFFIHFQKIVLGNPVAFTKPVLFTAAYMVIWNAAIAFVKVTNSEIE  208 (208)
Q Consensus       154 ~~~g~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~D~~~  208 (208)
                      ..++..+..+.+..     .|   .++...++.....++++.+++++||+||+|+
T Consensus       164 ~~~~~~~~~~~~a~-----~g---~~~~~~~l~~~~~~l~~~~i~~~n~~~D~e~  210 (306)
T TIGR02056       164 ASYIALPWWAGHAL-----FG---ELNPDIAVLTLIYSIAGLGIAIVNDFKSVEG  210 (306)
T ss_pred             HHHHHHHHHHHHHH-----hC---CCcHHHHHHHHHHHHHHHHHHHHHHccChHH
Confidence            88776555543321     12   2345555666777789999999999999986

This model represents the strictly cyanobacterial and plant-specific chlorophyll synthase ChlG. ChlG is the enzyme (esterase) which attaches the side chain moiety onto chlorophyllide a. Both geranylgeranyl and phytyl pyrophosphates are substrates to varying degrees in enzymes from different sources. Thus, ChlG may act as the final or penultimate step in chlorophyll biosynthesis (along with the geranylgeranyl reductase, ChlP).

>PRK12882 ubiA prenyltransferase; Reviewed

Probab=99.97  E-value=3e-30  Score=219.09  Aligned_cols=182  Identities=21%  Similarity=0.231  Sum_probs=144.0

Q ss_pred             HHHHHHhhhchhhHHHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhccccCCCCCcccC
Q 028504            7 KCDAFYRLTRPYSCVSIIAALLSVSLLPLQSPADFTPKLIIEAFKCMVPAIMMNNYANAINQLADVHIDKVNKPYLPLAC   86 (208)
Q Consensus         7 ~~~~~l~l~Rp~~~~~~~~~~~~g~~la~~~~~~~~~~~~~~~l~~~l~~~l~~~a~~~iNd~~D~~~D~~~~~~RPl~s   86 (208)
                      ++|+|+|++||++...+.++++.|++++.+.   .++..  ..++.+++.+++++++|++|||+|+|+||+|+|+||+|+
T Consensus         3 ~~~~~~~l~Rp~~~~~~~~~~~~g~~~a~~~---~~~~~--~~~l~~l~~~l~~~~~~~~Nd~~D~~iD~~~~~~Rpl~~   77 (276)
T PRK12882          3 TVRGYLELTRPVNAVVAGVAAFIGAFIAGGI---LSSPS--LTGLAFAAVFLATGAGNAINDYFDREIDRINRPDRPIPS   77 (276)
T ss_pred             CHHHHHHHHhhhHHHHHHHHHHHHHHHhccc---cchHH--HHHHHHHHHHHHHHHHHHHHHHhhhccccccCCCCCcCC
Confidence            3789999999999999999999999888542   12111  123456789999999999999999999999999999999


Q ss_pred             CccCHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhHhccCCCCCccccccCchhHHHHHHHHHhHHHHHHHHH
Q 028504           87 GDFSMGEGLAITIASPLMAVAMGIMLRSPPLVIGFIIWCIVGGAYSIDLPPLLRWKGNPLMAAVTIISMNGLLLLFPFFI  166 (208)
Q Consensus        87 G~is~~~a~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~Ys~~~P~p~~lK~~~~~~~~~v~~~~g~~~~~g~~~  166 (208)
                      |++|++|++.++.++.++++.+++.+|+....++.... +..+.||.      ++||++.+||+.++...|..+.+|...
T Consensus        78 G~is~~~a~~~~~~l~~~g~~~~~~l~~~~~~~~~~~~-~~~~~Yt~------~lK~~~~~g~~~vg~~~g~~~~~g~~~  150 (276)
T PRK12882         78 GAVSPRGALAFSILLFAAGVALAFLLPPLCLAIALFNS-LLLVLYAE------TLKGTPGLGNASVAYLTGSTFLFGGAA  150 (276)
T ss_pred             CCcCHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH-HHHHHHHH------HHhcccchhHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999988887776665 46889987      799999999999988887665555422


Q ss_pred             HHHHHHhcCCccccHHHHHHHHHHHHHHHHHHHhhcCCcccC
Q 028504          167 HFQKIVLGNPVAFTKPVLFTAAYMVIWNAAIAFVKVTNSEIE  208 (208)
Q Consensus       167 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~D~~~  208 (208)
                            .+...  ....+.+.....++..+.++.||++|+|+
T Consensus       151 ------~~~~~--~~~~~~l~~~~fl~~~~~~~~~~~~D~e~  184 (276)
T PRK12882        151 ------VGTEG--LLALLVLFALAALATLAREIIKDVEDIEG  184 (276)
T ss_pred             ------hcccc--hHHHHHHHHHHHHHHHHHHHHhhhhhhhh
Confidence                  22111  11222333444556778999999999985

>PRK12392 bacteriochlorophyll c synthase; Provisional

Probab=99.97  E-value=3.1e-29  Score=217.28  Aligned_cols=192  Identities=18%  Similarity=0.250  Sum_probs=138.4

Q ss_pred             HHHHHHHHHhhhchhhHHHHHHHHHHHHHhcCCCC-CCCCHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhccccCCCCC
Q 028504            4 LNKKCDAFYRLTRPYSCVSIIAALLSVSLLPLQSP-ADFTPKLIIEAFKCMVPAIMMNNYANAINQLADVHIDKVNKPYL   82 (208)
Q Consensus         4 ~~~~~~~~l~l~Rp~~~~~~~~~~~~g~~la~~~~-~~~~~~~~~~~l~~~l~~~l~~~a~~~iNd~~D~~~D~~~~~~R   82 (208)
                      +++++|+|+|++||+++. ..++...|..+|.+.. +.... ....+....+.+.+.++++|++|||+|+|+|++|+|+|
T Consensus         8 ~~~~~k~~l~L~kP~t~l-~~~p~~~g~~lA~g~~~~~~~~-~~l~l~~~~~~~~L~~~a~~~iND~~D~~~D~~n~rtR   85 (331)
T PRK12392          8 FVDKIRAHLELLDPVTWI-SVFPCLAGGVMASGAMQPTLHD-YLLLLALFLMYGPLGTGFSQSVNDYFDLELDRVNEPTR   85 (331)
T ss_pred             hhHHHHHHHHHHCHHHHH-HHHHHHHHHHHHcCCCCCChhH-HHHHHHHHHHHHHHHHHHHhHHhcceeecccccCCCCC
Confidence            567899999999999888 4455556666775321 12211 11111122334456667899999999999999999999


Q ss_pred             cccCCccCHHHHHHHHHHHHHHHHHHHHHhhH-------HHHHHHHHHHHHHhHhccCCCCCccccccCchhHHHHHHHH
Q 028504           83 PLACGDFSMGEGLAITIASPLMAVAMGIMLRS-------PPLVIGFIIWCIVGGAYSIDLPPLLRWKGNPLMAAVTIISM  155 (208)
Q Consensus        83 Pl~sG~is~~~a~~~~~~l~~~~~~l~~~~~~-------~~~~~~~~~~~~~~~~Ys~~~P~p~~lK~~~~~~~~~v~~~  155 (208)
                      |+++|++|++|++.++..+..+++.++.+++.       +......+.+.+.+++||.  | |+++||+++.++..++..
T Consensus        86 pl~~G~is~~~al~~~~~l~~la~~lg~~L~~~~~~~~~~~il~~~~~~l~l~~~YS~--~-P~~lKr~~~~g~~~vGl~  162 (331)
T PRK12392         86 PIPSGRLSEKEALWNSIIVLLLAIGLGVWLGLHIGGERGMVIISSILAGLFVAYIYSA--P-PLKLKKNILTSAPAVGFS  162 (331)
T ss_pred             CCCcCCcCHHHHHHHHHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHhhhhcC--C-chhhhccchhHHHHHHHH
Confidence            99999999999999999999999988877643       2222322333468899999  7 999999999999988888


Q ss_pred             HhHHHHHHHHHHHHHHHhcCCccccHHHHHHHHHHHHHHHHHHHhhcCCcccC
Q 028504          156 NGLLLLFPFFIHFQKIVLGNPVAFTKPVLFTAAYMVIWNAAIAFVKVTNSEIE  208 (208)
Q Consensus       156 ~g~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~D~~~  208 (208)
                      ++.....+...     ..+ .  .+.+.++.....++++.+.+++||++|+|+
T Consensus       163 ~~~~~~~~~~a-----~~g-~--~~~~~~~l~~~~~l~~~~~~~i~d~~D~eg  207 (331)
T PRK12392        163 YGFITFLSANA-----LFS-D--IRPEVVWLAGLNFFMAIALIIMNDFKSVEG  207 (331)
T ss_pred             HHHHHHHHHHH-----Hhc-C--CCHHHHHHHHHHHHHHHHHHHHHcccchhh
Confidence            77544333211     222 2  344555566677888999999999999985

>PRK12884 ubiA prenyltransferase; Reviewed

Probab=99.97  E-value=2.7e-29  Score=213.38  Aligned_cols=181  Identities=19%  Similarity=0.315  Sum_probs=147.3

Q ss_pred             HHHHHHHhhhchhhHHHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhccccCCCCCccc
Q 028504            6 KKCDAFYRLTRPYSCVSIIAALLSVSLLPLQSPADFTPKLIIEAFKCMVPAIMMNNYANAINQLADVHIDKVNKPYLPLA   85 (208)
Q Consensus         6 ~~~~~~l~l~Rp~~~~~~~~~~~~g~~la~~~~~~~~~~~~~~~l~~~l~~~l~~~a~~~iNd~~D~~~D~~~~~~RPl~   85 (208)
                      +++++|+|++||+++..+.++++.|.+++.+.   .++.   ..++.+++.++.++++|++|||+|+|+|++|+|+||++
T Consensus         2 ~~l~~~~~l~R~~~~~~~~~~~~~g~~la~~~---~~~~---~~~l~~l~~~l~~~a~~~~Nd~~D~~~D~~~r~~Rpl~   75 (279)
T PRK12884          2 TKMKAYLELLRPEHGLMAGIAVVLGAIIALGG---LPLD---EALLGFLTAFFASGSANALNDYFDYEVDRINRPDRPIP   75 (279)
T ss_pred             hHHHHHHHHhhhhHHHHHHHHHHHHHHHHCCC---CchH---HHHHHHHHHHHHHHHHHHHHhhhhHhhhhccCCCCCCC
Confidence            57899999999999999999999999888542   2221   12345678999999999999999999999999999999


Q ss_pred             CCccCHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhHhccCCCCCccccccCchhHHHHHHHHHhHHHHHHHH
Q 028504           86 CGDFSMGEGLAITIASPLMAVAMGIMLRSPPLVIGFIIWCIVGGAYSIDLPPLLRWKGNPLMAAVTIISMNGLLLLFPFF  165 (208)
Q Consensus        86 sG~is~~~a~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~Ys~~~P~p~~lK~~~~~~~~~v~~~~g~~~~~g~~  165 (208)
                      +|++|+++++.++.++.++++.++..+|+....++.+.. +.++.||.      ++||++.++++.++...|..+..|..
T Consensus        76 ~G~is~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~-~~~~~Ys~------~lK~~~~~~~~~~~~~~~~~~~~g~~  148 (279)
T PRK12884         76 SGRISRREALLLAILLFILGLIAAYLISPLAFLVVILVS-VLGILYNW------KLKEYGLIGNLYVAFLTGMTFIFGGI  148 (279)
T ss_pred             CCCCCHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH-HHHHHHHH------hhccccchhHHHHHHHHHHHHHHHHH
Confidence            999999999999999999999999889988887776655 57899987      69999999999999888765554543


Q ss_pred             HHHHHHHhcCCccccHHHHHHHHHHHHHHHHHHHhhcCCcccC
Q 028504          166 IHFQKIVLGNPVAFTKPVLFTAAYMVIWNAAIAFVKVTNSEIE  208 (208)
Q Consensus       166 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~D~~~  208 (208)
                      ..      +..   +...+++.....++..+.++.||++|+|+
T Consensus       149 ~~------~~~---~~~~~~l~~~~~~~~~~~~~~~~~~D~e~  182 (279)
T PRK12884        149 AV------GEL---NEAVILLAAMAFLMTLGREIMKDIEDVEG  182 (279)
T ss_pred             Hh------CCC---chHHHHHHHHHHHHHHHHHHHHHhhhhhh
Confidence            21      221   12344455666778888999999999986

>PRK12883 ubiA prenyltransferase UbiA-like protein; Reviewed

Probab=99.97  E-value=3.3e-29  Score=212.84  Aligned_cols=179  Identities=20%  Similarity=0.243  Sum_probs=141.2

Q ss_pred             HHHHHhhhchhhHHHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhccccCCCCCcccCC
Q 028504            8 CDAFYRLTRPYSCVSIIAALLSVSLLPLQSPADFTPKLIIEAFKCMVPAIMMNNYANAINQLADVHIDKVNKPYLPLACG   87 (208)
Q Consensus         8 ~~~~l~l~Rp~~~~~~~~~~~~g~~la~~~~~~~~~~~~~~~l~~~l~~~l~~~a~~~iNd~~D~~~D~~~~~~RPl~sG   87 (208)
                      +|+|+|++||+++..+.++.+.|++++.++.+  ++..   .++.+++.++.++++|++|||+|+|+|++|+|+||+|+|
T Consensus         3 l~~~~~l~Rp~~~~~~~~~~~~G~~la~~~~~--~~~~---~~l~~~~~~~~~~a~~~~Nd~~D~~~D~~n~~~Rpl~sG   77 (277)
T PRK12883          3 LKAFIEITRPHNCILAGIVGILGSLVALGGIP--PIKT---LILIFLVVYLGCSGGNTINDYFDYEIDKINRPNRPLPRG   77 (277)
T ss_pred             HHHHHHHHhhhHHHHHHHHHHHHHHHHcCCCC--cHHH---HHHHHHHHHHHHHHHhHHHhhhhHhccccCCCCCCCCCC
Confidence            67899999999999999999999888743211  1211   223456888889999999999999999999999999999


Q ss_pred             ccCHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhHhccCCCCCccccccCchhHHHHHHHHHhHHHHHHHHHH
Q 028504           88 DFSMGEGLAITIASPLMAVAMGIMLRSPPLVIGFIIWCIVGGAYSIDLPPLLRWKGNPLMAAVTIISMNGLLLLFPFFIH  167 (208)
Q Consensus        88 ~is~~~a~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~Ys~~~P~p~~lK~~~~~~~~~v~~~~g~~~~~g~~~~  167 (208)
                      ++|+++++.++.++.++|+.+++.+|++.+.++..+. ..++.|+.      ++||++.+||+.++...|..+..|....
T Consensus        78 ~is~~~a~~~~~~l~~~g~~l~~~~~~~~~~~~~~~~-~~~~~Y~~------~~k~~~~lg~~~vg~~~g~~~~~g~~a~  150 (277)
T PRK12883         78 AMSRKAALYYSLLLFAVGLALAYLINIEAFLFALGAY-VLMFLYAW------KLKPLPFIGNVVVALLTGATPIYGAIAV  150 (277)
T ss_pred             ccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHhh------cccCCcchhhHHHHHHHHHHHHHHHHHh
Confidence            9999999999999999999999889998887776665 57999987      6899998999999999997765554211


Q ss_pred             HHHHHhcCCccccHHHHHHHHHHHHHHHHHHHhhcCCcccC
Q 028504          168 FQKIVLGNPVAFTKPVLFTAAYMVIWNAAIAFVKVTNSEIE  208 (208)
Q Consensus       168 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~D~~~  208 (208)
                            + .  .+...+. ..+..++..++++.||++|+|+
T Consensus       151 ------~-~--~~~~~~~-~~~~fl~~~~~~~~~~~~D~e~  181 (277)
T PRK12883        151 ------G-R--IGLAGYL-AICAFLVNVAREIMKDIEDIEG  181 (277)
T ss_pred             ------c-c--ccHHHHH-HHHHHHHHHHHHHHhhhhhhcc
Confidence                  1 1  1222222 2234555678999999999985

>PRK13106 ubiA prenyltransferase; Reviewed

Probab=99.97  E-value=4e-29  Score=214.08  Aligned_cols=190  Identities=14%  Similarity=0.163  Sum_probs=145.8

Q ss_pred             HHHHHHHHHhhhchhhHHHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhccccC--CCC
Q 028504            4 LNKKCDAFYRLTRPYSCVSIIAALLSVSLLPLQSPADFTPKLIIEAFKCMVPAIMMNNYANAINQLADVHIDKVN--KPY   81 (208)
Q Consensus         4 ~~~~~~~~l~l~Rp~~~~~~~~~~~~g~~la~~~~~~~~~~~~~~~l~~~l~~~l~~~a~~~iNd~~D~~~D~~~--~~~   81 (208)
                      +++++++|+|++||++....+.+.+.|++++.++.  .++..   .++..++++++++++|++|||+|+|+|++|  +|+
T Consensus        11 ~~~~l~~yl~L~R~~~~~~~l~~~~~g~~la~~~~--~~~~~---l~l~~lg~~l~~~a~~~~Nd~~D~diD~~~~RT~~   85 (300)
T PRK13106         11 TRSKFYIILRFLRIEQTFFSLPMAYLGAFVAIKGI--PPIST---LILIFLALFFLRTAGMTNDNLADLEIDAKNPRTKN   85 (300)
T ss_pred             hHHHHHHHHHHHccccHHHHHHHHHHHHHHHcCCC--CCHHH---HHHHHHHHHHHHHHHHHHHhhHHhccccCCCccCC
Confidence            56789999999999999999999999998886432  23222   234567999999999999999999999998  579


Q ss_pred             CcccCCccCHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhHhccCCCCCccccccCchhHHHHHHHHHhHHHH
Q 028504           82 LPLACGDFSMGEGLAITIASPLMAVAMGIMLRSPPLVIGFIIWCIVGGAYSIDLPPLLRWKGNPLMAAVTIISMNGLLLL  161 (208)
Q Consensus        82 RPl~sG~is~~~a~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~Ys~~~P~p~~lK~~~~~~~~~v~~~~g~~~~  161 (208)
                      ||+|||++|++||+.+..++.+.++.++..+|+.+..++.... +....|+.       .||++.++|+.++...|..+.
T Consensus        86 RPl~sG~is~~~A~~~~~~~~~~~~~~~~~ln~~~~~l~~~~~-~~~~~Y~~-------~KR~t~~~~~~lg~~~~~~~~  157 (300)
T PRK13106         86 RPLVTGAIKISEAKALITAGLILFFASAYLVNRWALLLSPIVA-LIAMSYPY-------MKRYTAFANYHLASIQGLAVF  157 (300)
T ss_pred             CCCCCCCcCHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH-HHHHHHhH-------HhcCCcchHHHHHHHHHHHHH
Confidence            9999999999999999887777777778888988888776655 35677864       899999999999998887655


Q ss_pred             HHHHHHHHHHHhcCCc--cccHHHHHHHHHHHHHHHHHHHhhcCCcccC
Q 028504          162 FPFFIHFQKIVLGNPV--AFTKPVLFTAAYMVIWNAAIAFVKVTNSEIE  208 (208)
Q Consensus       162 ~g~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~k~~~D~~~  208 (208)
                      .|....  .+....+.  ..+.+.+++.+...+|+.+.++.|+.+|+|+
T Consensus       158 ~G~~a~--~g~~~~~~~~~l~~~~~~l~~~~~lw~~~~d~iya~~D~e~  204 (300)
T PRK13106        158 SGAVAV--LGLYANSLIQVLLRVPWLFVIGTILWAAGFDLYNHIPDAEF  204 (300)
T ss_pred             HHHHHH--cCCcccchhhhhhHHHHHHHHHHHHHHHHHHHHHHccchhh
Confidence            554322  11111111  1122323345566788999999999999984

>PRK12886 ubiA prenyltransferase; Reviewed

Probab=99.97  E-value=7.8e-29  Score=211.81  Aligned_cols=187  Identities=16%  Similarity=0.113  Sum_probs=145.7

Q ss_pred             ChhHHHHHHHHHhhhchhhHHHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhccccCC-
Q 028504            1 MQVLNKKCDAFYRLTRPYSCVSIIAALLSVSLLPLQSPADFTPKLIIEAFKCMVPAIMMNNYANAINQLADVHIDKVNK-   79 (208)
Q Consensus         1 ~~~~~~~~~~~l~l~Rp~~~~~~~~~~~~g~~la~~~~~~~~~~~~~~~l~~~l~~~l~~~a~~~iNd~~D~~~D~~~~-   79 (208)
                      |+.+.+|+++|+|++||++......+++.|+++|..+.+  ++.   ..++..++.+++++++|++|||+|+|+|++|+ 
T Consensus         1 ~~~~~~~~~~y~~L~r~~~~~~~~~~~~~g~~lA~~~~~--~~~---~l~~~~l~~~l~~~a~~~~Nd~~D~~iD~~~~R   75 (291)
T PRK12886          1 MMTLLTKLKVFLEMIKFSHTLFALPFAGIGAVLAALGLP--GAS---QLDWILMAMVGARTAAMGFNRLIDAEIDARNPR   75 (291)
T ss_pred             CCchHHHHHHHHHHhCccchHHHHHHHHHHHHHhccCCC--CHH---HHHHHHHHHHHHHHHHHHHHhHHhhccCCCCCC
Confidence            677889999999999999999999988999988854322  221   12345678999999999999999999999986 


Q ss_pred             -CCCcccCCccCHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhHhccCCCCCccccccCchhHHHHHHHHHhH
Q 028504           80 -PYLPLACGDFSMGEGLAITIASPLMAVAMGIMLRSPPLVIGFIIWCIVGGAYSIDLPPLLRWKGNPLMAAVTIISMNGL  158 (208)
Q Consensus        80 -~~RPl~sG~is~~~a~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~Ys~~~P~p~~lK~~~~~~~~~v~~~~g~  158 (208)
                       |+||+|+|++|++||..+...+.+.++.+...+|+.+..++.+.. .....|+.       .||++.++++..+...+.
T Consensus        76 T~~RPL~sG~is~~~A~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~-~~~~~Y~~-------~Kr~t~~~~~~~g~~~~~  147 (291)
T PRK12886         76 TAGRAIPAGLISKGSAILFIVLSSLLMLFAAWFLNPLCLYLSPPAL-FFLLLYSY-------CKRFTALAHVVLGFCLAL  147 (291)
T ss_pred             CCCCCCCCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHhh-------hhccccccHHHHHHHHHH
Confidence             799999999999999998776666666667778988887776655 46788975       899999999998888765


Q ss_pred             HHHHHHHHHHHHHHhcCCccccHHHHHHHHHHHHHHHHHHHhhcCCcccC
Q 028504          159 LLLFPFFIHFQKIVLGNPVAFTKPVLFTAAYMVIWNAAIAFVKVTNSEIE  208 (208)
Q Consensus       159 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~D~~~  208 (208)
                      .+ ++.+.. ++    +.  .+.+.+++...+.+|..+.++.++++|.|+
T Consensus       148 ~~-l~g~~a-~~----g~--~~~~~~ll~~~~~lw~~~~~~~~a~~D~e~  189 (291)
T PRK12886        148 AP-LGAWIA-IR----GT--IELPAILLGLAVLFWVAGFDILYALQDLEF  189 (291)
T ss_pred             HH-HHHHHH-Hc----CC--CcHHHHHHHHHHHHHHHHHHHHHHhccHHh
Confidence            44 444443 11    22  234445555666788888889999999885

>TIGR01475 ubiA_other putative 4-hydroxybenzoate polyprenyltransferase

Probab=99.96  E-value=1.1e-28  Score=210.06  Aligned_cols=183  Identities=17%  Similarity=0.150  Sum_probs=143.3

Q ss_pred             HHHHHHhhhchhhHHHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhccccC--CCCCcc
Q 028504            7 KCDAFYRLTRPYSCVSIIAALLSVSLLPLQSPADFTPKLIIEAFKCMVPAIMMNNYANAINQLADVHIDKVN--KPYLPL   84 (208)
Q Consensus         7 ~~~~~l~l~Rp~~~~~~~~~~~~g~~la~~~~~~~~~~~~~~~l~~~l~~~l~~~a~~~iNd~~D~~~D~~~--~~~RPl   84 (208)
                      |+|+|+|++||++........+.|.+++..+.  .++..   .++.+++++++++++|++|||+|+|+|++|  +|+||+
T Consensus         1 ~~~~~~~L~r~~~~~~~~~~~~~g~~la~~~~--~~~~~---~~l~~l~~~l~~~a~~~~Nd~~D~~~D~~~~Rt~~RPl   75 (282)
T TIGR01475         1 KFKDILELIKFEHTVFALPFAYAGALLAAKGL--PGLKT---LILILIAAVSARTAAMAFNRIIDRAIDARNPRTKNRPL   75 (282)
T ss_pred             CHHHHHHHHccccHHHHHHHHHHHHHHhcCCC--CCHHH---HHHHHHHHHHHHHHHHHHHHHHHHcccCCCCccCCCCC
Confidence            46899999999999999888888988875432  23322   334568999999999999999999999998  689999


Q ss_pred             cCCccCHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhHhccCCCCCccccccCchhHHHHHHHHHhHHHHHHH
Q 028504           85 ACGDFSMGEGLAITIASPLMAVAMGIMLRSPPLVIGFIIWCIVGGAYSIDLPPLLRWKGNPLMAAVTIISMNGLLLLFPF  164 (208)
Q Consensus        85 ~sG~is~~~a~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~Ys~~~P~p~~lK~~~~~~~~~v~~~~g~~~~~g~  164 (208)
                      |+|++|++||+.++.++.+.++.++..+|+.+..++.... ...+.|+.       +||++.++++..+...|..+..|.
T Consensus        76 ~sG~is~~~a~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~-~~~~~Y~~-------~Kr~~~~~~~~~g~~~~~~~~~g~  147 (282)
T TIGR01475        76 VSGLISKKEARTMIILSLALFLSASYFLNPLAFILSPLVL-LVLIIYPY-------TKRFTFLCHYVLGSTYGLAPLAGW  147 (282)
T ss_pred             CCCCcCHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH-HHHHHHhh-------HhccccccHHHHHHHHHHHHHHHH
Confidence            9999999999999999888888888888888887776555 46788864       899999999999888876554553


Q ss_pred             HHHHHHHHhcCCccccHHHHHHHHHHHHHHHHHHHhhcCCcccC
Q 028504          165 FIHFQKIVLGNPVAFTKPVLFTAAYMVIWNAAIAFVKVTNSEIE  208 (208)
Q Consensus       165 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~D~~~  208 (208)
                      ...  +    +........++......++..+.++.||.+|+|+
T Consensus       148 ~a~--~----g~~~~~~~~~ll~~~~~~w~~~~~~i~~~~D~e~  185 (282)
T TIGR01475       148 VAV--I----GTISFFLVAWLLGIGVGFWIAGFDLIYAIQDYEF  185 (282)
T ss_pred             HHH--h----CCccchHHHHHHHHHHHHHHHHHHHHHHHhhHHh
Confidence            222  1    1222113334456667788889999999999974

A fairly deep split separates this polyprenyltransferase subfamily from the set of mitochondrial and proteobacterial 4-hydroxybenzoate polyprenyltransferases, described in TIGR01474. Protoheme IX farnesyltransferase (heme O synthase) (TIGR01473) is more distantly related. Because no species appears to have both this protein and a member of TIGR01474, it is likely that This model represents 4-hydroxybenzoate polyprenyltransferase, a critical enzyme of ubiquinone biosynthesis, in the Archaea, Gram-positive bacteria, Aquifex aeolicus, the Chlamydias, etc.

>PRK12895 ubiA prenyltransferase; Reviewed

Probab=99.96  E-value=2.1e-28  Score=208.13  Aligned_cols=183  Identities=15%  Similarity=0.133  Sum_probs=143.0

Q ss_pred             HHHHHHhhhchhhHHHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhccccC--CCCCcc
Q 028504            7 KCDAFYRLTRPYSCVSIIAALLSVSLLPLQSPADFTPKLIIEAFKCMVPAIMMNNYANAINQLADVHIDKVN--KPYLPL   84 (208)
Q Consensus         7 ~~~~~l~l~Rp~~~~~~~~~~~~g~~la~~~~~~~~~~~~~~~l~~~l~~~l~~~a~~~iNd~~D~~~D~~~--~~~RPl   84 (208)
                      |+|+|+|++||++....+..++.|.++|.++.  .++..   .++..++++++++++|++||++|+|+||+|  +|+||+
T Consensus         2 ~~~~~~el~k~~~t~~al~~a~~g~~lA~~~~--~~~~~---l~l~~~~~~~~rsag~~~Ndi~Dr~iD~~~~RT~~RPL   76 (286)
T PRK12895          2 NFRDIVDYIKLEHTVFDLPFILAGYVIAAGHY--IHPIK---ILLILIAAVSARTSAMSINRIEGLRYDMINPRKKDWAL   76 (286)
T ss_pred             cHHHHHHHHhHHHHHHHHHHHHHHHHHhcCCC--CCHHH---HHHHHHHHHHHHHHHHHHHhHHHhcccCCCCcCCCCCC
Confidence            47899999999999999999999998885421  22211   223456788999999999999999999998  579999


Q ss_pred             cCCccCHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhHhccCCCCCccccccCchhHHHHHHHHHhHHHHHHH
Q 028504           85 ACGDFSMGEGLAITIASPLMAVAMGIMLRSPPLVIGFIIWCIVGGAYSIDLPPLLRWKGNPLMAAVTIISMNGLLLLFPF  164 (208)
Q Consensus        85 ~sG~is~~~a~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~Ys~~~P~p~~lK~~~~~~~~~v~~~~g~~~~~g~  164 (208)
                      |||++|++||+.+..+++++++.+...+|+.+..++.... .....|+       .+||++.++|+.+|...|..+..| 
T Consensus        77 psG~is~~~A~~~~~~~~~~~~~~~~~ln~l~~~l~~~~~-~l~~~yp-------~~KR~t~~~~~~lG~~~g~~~l~g-  147 (286)
T PRK12895         77 VSGRIKMREAIAFTIIFIAIFEICTFLLNRLVFILSPIVI-FLFIIDP-------FLKRYTAWRHIYMGSIIGLGVLAG-  147 (286)
T ss_pred             CCCCCCHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH-HHHHHHH-------HHHhCccccHHHHHHHHHhHHHHH-
Confidence            9999999999999999999999999999999887776543 3444453       599999999999998888544333 


Q ss_pred             HHHHHHHHhcCCccccHHHHHHHHHHHHHHHHHHHhhcCCcccC
Q 028504          165 FIHFQKIVLGNPVAFTKPVLFTAAYMVIWNAAIAFVKVTNSEIE  208 (208)
Q Consensus       165 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~D~~~  208 (208)
                      +.+     .++..++....+++.....+|+.+.++.++.+|+|+
T Consensus       148 ~~A-----v~g~~~~~~~~~~l~~~~~~W~~g~D~iYa~qD~e~  186 (286)
T PRK12895        148 YLA-----VIPAFPYNLLIYIIFISSSLWIAGFDIIYVIPDIEY  186 (286)
T ss_pred             HHH-----HcCCCCchHHHHHHHHHHHHHHHHHHHHHHhcchhh
Confidence            322     233333333334556677889999999999999884

>PRK12869 ubiA protoheme IX farnesyltransferase; Reviewed

Probab=99.96  E-value=3.3e-28  Score=206.91  Aligned_cols=182  Identities=16%  Similarity=0.187  Sum_probs=137.7

Q ss_pred             HHHHHHhhhchhhHHHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhccccCC--CCCcc
Q 028504            7 KCDAFYRLTRPYSCVSIIAALLSVSLLPLQSPADFTPKLIIEAFKCMVPAIMMNNYANAINQLADVHIDKVNK--PYLPL   84 (208)
Q Consensus         7 ~~~~~l~l~Rp~~~~~~~~~~~~g~~la~~~~~~~~~~~~~~~l~~~l~~~l~~~a~~~iNd~~D~~~D~~~~--~~RPl   84 (208)
                      |+|+|+|++||++.....++++.|++++.++  ..++..   .++.++++.++++++|++|||+|+|+|++|+  |+||+
T Consensus         1 ~~~~~~~l~rp~~~~~~~~~~~~g~~la~~~--~~~~~~---~~l~~~~~~l~~~a~~~~Nd~~D~~iD~~~~Rt~~RPl   75 (279)
T PRK12869          1 KIKAYLKLLKPRVIWLLDLAAVAGYFLAAKH--GVSWLP---LIPLLIGGTLASGGSAAFNHGIERDIDKVMSRTSKRPT   75 (279)
T ss_pred             CHHHHHHHhHHHHHHHHHHHHHHHHHHhccC--CCCHHH---HHHHHHHHHHHHHHHHHHhchHhcCCCCCCCCCCCCCc
Confidence            4689999999999999999999999888532  223322   2345678899999999999999999999976  79999


Q ss_pred             cCCccCHHHHHHHHHHHHHHHHHHHHH-hhHHHHHHHHHHHHHHhHhccCCCCCccccccCchhHHHHHHHHHhHHHHHH
Q 028504           85 ACGDFSMGEGLAITIASPLMAVAMGIM-LRSPPLVIGFIIWCIVGGAYSIDLPPLLRWKGNPLMAAVTIISMNGLLLLFP  163 (208)
Q Consensus        85 ~sG~is~~~a~~~~~~l~~~~~~l~~~-~~~~~~~~~~~~~~~~~~~Ys~~~P~p~~lK~~~~~~~~~v~~~~g~~~~~g  163 (208)
                      |+|++|++||..++..+.++++.++.+ +|+.+.....+....+.+.||.      ++||++. .|..++...|..+++|
T Consensus        76 ~sG~is~~~a~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~Yt~------~lKr~~~-~~~~v~~~~g~~~~l~  148 (279)
T PRK12869         76 PVGLVNRKEALAVGSALSALGTALGFLLLGPLTALFIALGWFFYAVVYTI------WLKPRTW-LNIVIGGFAGNAAALA  148 (279)
T ss_pred             CCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhCc------ccccCCh-HHHHHHHHHHHHHHHH
Confidence            999999999999999999999998877 8877654434444457888987      6999987 4777888888787777


Q ss_pred             HHHHHHHHHhcCCccccHHHHHHHHHHHHHHHHHHHhhcCCccc
Q 028504          164 FFIHFQKIVLGNPVAFTKPVLFTAAYMVIWNAAIAFVKVTNSEI  207 (208)
Q Consensus       164 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~D~~  207 (208)
                      .+... +   | .  .+...+++...+.++..+...+++.+|.|
T Consensus       149 g~~a~-~---g-~--~~~~~~ll~~~~~~w~~~~~~~l~~~d~e  185 (279)
T PRK12869        149 GYASG-T---G-S--LDLEAVLLSFLIYLWTPGHIWSLALKYRE  185 (279)
T ss_pred             HHHHH-h---C-C--CCHHHHHHHHHHHHHHHHHHHHHHHHhHH
Confidence            76552 2   1 2  34444555556666776666554444544

>COG0382 UbiA 4-hydroxybenzoate polyprenyltransferase and related prenyltransferases [Coenzyme metabolism]

Probab=99.96  E-value=5e-28  Score=206.75  Aligned_cols=185  Identities=19%  Similarity=0.238  Sum_probs=143.4

Q ss_pred             hhHHHHHHHHHhhhchhhHHHHHHH---HHHHHHhcCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhccccC
Q 028504            2 QVLNKKCDAFYRLTRPYSCVSIIAA---LLSVSLLPLQSPADFTPKLIIEAFKCMVPAIMMNNYANAINQLADVHIDKVN   78 (208)
Q Consensus         2 ~~~~~~~~~~l~l~Rp~~~~~~~~~---~~~g~~la~~~~~~~~~~~~~~~l~~~l~~~l~~~a~~~iNd~~D~~~D~~~   78 (208)
                      ++.+++++.+.+++|++++..+...   ...|...+..   +.+.  +...++.+++++++++++|++||++|+|+||+|
T Consensus         4 ~~~~~~~~~~~~l~r~~r~i~~l~~~~~~~~~~~~~~~---~~~~--~~~~~l~~l~~~~~~~ag~~iND~~D~eiD~~n   78 (289)
T COG0382           4 MSLPNKLKALLKLLRLDRPIFNLLLLLPALLGLLLAAS---GLPS--LKLLLLAFLAFFLARSAGYVINDLADREIDRIN   78 (289)
T ss_pred             hhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHc---CCch--HHHHHHHHHHHHHHHHHhHHHHHHhhhhccCCC
Confidence            3455666666666666666655544   4445544431   2222  233455678899999999999999999999999


Q ss_pred             CC--CCcccCCccCHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhHhccCCCCCccccccCchhHHHHHHHHH
Q 028504           79 KP--YLPLACGDFSMGEGLAITIASPLMAVAMGIMLRSPPLVIGFIIWCIVGGAYSIDLPPLLRWKGNPLMAAVTIISMN  156 (208)
Q Consensus        79 ~~--~RPl~sG~is~~~a~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~Ys~~~P~p~~lK~~~~~~~~~v~~~~  156 (208)
                      +|  +||+|||++|++||+.+..++.++++.+++.+|++++.+..... ++.+.|    |   ++||++.++|++++..+
T Consensus        79 ~rt~~RPl~sG~vS~~~a~~~~~~~~~~~~~~a~~l~~~~~~l~~~~~-~l~~~Y----~---~~Kr~~~~~~~~lg~~~  150 (289)
T COG0382          79 PRTKNRPLPSGRVSVKEALLLAILLLLLGLALALLLNPLAFLLSLAAL-VLALAY----P---FLKRFTFLPQLVLGLAF  150 (289)
T ss_pred             CCccCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH-HHHHHH----H---HhhcCCchHHHHHHHHH
Confidence            87  99999999999999999999999999999999998877776655 588888    3   79999999999999999


Q ss_pred             hHHHHHHHHHHHHHHHhcCCccccHHHHHHHHHHHHHHHHHHHhhcCCccc
Q 028504          157 GLLLLFPFFIHFQKIVLGNPVAFTKPVLFTAAYMVIWNAAIAFVKVTNSEI  207 (208)
Q Consensus       157 g~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~D~~  207 (208)
                      |..+..|....      ++.  .+.+.+++..+..+++++.++.||.+|+|
T Consensus       151 ~~~~~~g~~a~------~~~--~~~~~~~l~~~~~l~~~~~~~i~~~~D~e  193 (289)
T COG0382         151 GLGALAGAAAV------GGS--LPLLAWLLLLAAILWTLGYDIIYAIQDIE  193 (289)
T ss_pred             HHHHHHHHHHH------hCc--cchHHHHHHHHHHHHHHHHHHHHhccCcc
Confidence            87766665432      211  34555666778889999999999999998

>PRK12847 ubiA 4-hydroxybenzoate polyprenyltransferase; Reviewed

Probab=99.96  E-value=9.5e-28  Score=204.69  Aligned_cols=185  Identities=18%  Similarity=0.205  Sum_probs=143.6

Q ss_pred             HHHHHHHHHhhhchhhHHH---HHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhccccCC-
Q 028504            4 LNKKCDAFYRLTRPYSCVS---IIAALLSVSLLPLQSPADFTPKLIIEAFKCMVPAIMMNNYANAINQLADVHIDKVNK-   79 (208)
Q Consensus         4 ~~~~~~~~l~l~Rp~~~~~---~~~~~~~g~~la~~~~~~~~~~~~~~~l~~~l~~~l~~~a~~~iNd~~D~~~D~~~~-   79 (208)
                      .++++++|+|++||+++..   +.++++.|..++..+. ..++.   ..++.+++++++++++|++|||+|+|+|++|+ 
T Consensus         3 ~~~~~~~~~~l~R~~kp~~~~l~~~~~~~g~~la~~~~-~~~~~---~~ll~~l~~~l~~~a~~~~Nd~~D~~iD~~~~R   78 (285)
T PRK12847          3 ILMKFLAYFKLMRLHKPIGILLVFFPTLFGLLLASHSL-LPDIS---LLVLFIIGSVLMRSAGCIINDIFDRKIDKHVAR   78 (285)
T ss_pred             hHHHHHHHHHHHCcchHHHHHHHHHHHHHHHHHHhCcc-CCcHH---HHHHHHHHHHHHHHHHHHHHhHHHhhhccCCCc
Confidence            4567999999999998765   5577778888775421 12322   23455678899999999999999999999754 


Q ss_pred             -CCCcccCCccCHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhHhccCCCCCccccccCchhHHHHHHHHHhH
Q 028504           80 -PYLPLACGDFSMGEGLAITIASPLMAVAMGIMLRSPPLVIGFIIWCIVGGAYSIDLPPLLRWKGNPLMAAVTIISMNGL  158 (208)
Q Consensus        80 -~~RPl~sG~is~~~a~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~Ys~~~P~p~~lK~~~~~~~~~v~~~~g~  158 (208)
                       |+||+|||++|++||+.++.++.++++.+.+.+|+..+.++.+.. +..+.||.       .||++.++++..+..++.
T Consensus        79 t~~Rpl~sG~is~~~a~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~-~~~~~Y~~-------~Kr~~~~~~~~~g~~~~~  150 (285)
T PRK12847         79 TKNRPLASGALSVKQALILLFILLLIALVILLLLNKTTIYLSFIAV-ILIVLYPL-------MKRFFYWPQLFLGFTFNM  150 (285)
T ss_pred             ccCCCCCCCCcCHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH-HHHHhccc-------cccCCcccHHHHHHHHHH
Confidence             699999999999999999999999999988888988888887666 46888875       889999999888877774


Q ss_pred             HHHHHHHHHHHHHHhcCCccccHHHHHHHHHHHHHHHHHHHhhcCCcccC
Q 028504          159 LLLFPFFIHFQKIVLGNPVAFTKPVLFTAAYMVIWNAAIAFVKVTNSEIE  208 (208)
Q Consensus       159 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~D~~~  208 (208)
                      .+..| +..     .++.  .+...+++.+...++..+.+.+|+.+|+|+
T Consensus       151 ~~l~~-~~a-----~~g~--~~~~~~~l~~~~~~w~~~~~~~~a~~D~e~  192 (285)
T PRK12847        151 GILMA-FAA-----VQNQ--LDIEAILLYIGCIFWTIGYDTIYAYQDKKD  192 (285)
T ss_pred             HHHHH-HHH-----HcCC--CcHHHHHHHHHHHHHHHHHHHHHHhccHhh
Confidence            33333 332     1222  345555666777888999999999999986

>PRK12870 ubiA 4-hydroxybenzoate polyprenyltransferase; Reviewed

Probab=99.96  E-value=5.5e-28  Score=206.56  Aligned_cols=184  Identities=18%  Similarity=0.154  Sum_probs=143.4

Q ss_pred             HHHHHHHHHhhhchhhHHHHH---HHHHHHHHhcCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhccccCC-
Q 028504            4 LNKKCDAFYRLTRPYSCVSII---AALLSVSLLPLQSPADFTPKLIIEAFKCMVPAIMMNNYANAINQLADVHIDKVNK-   79 (208)
Q Consensus         4 ~~~~~~~~l~l~Rp~~~~~~~---~~~~~g~~la~~~~~~~~~~~~~~~l~~~l~~~l~~~a~~~iNd~~D~~~D~~~~-   79 (208)
                      +++++++|+|++||+++.+..   ++++.|..+|.++.  .++..   .++..++.+++++++|++|||+|+|+||+|+ 
T Consensus         5 ~~~~~~~y~~L~R~~kp~~~~l~~~~~~~g~~lA~~~~--~~~~~---~~l~~lg~~~~~~a~~~~Nd~~D~~iD~~~~R   79 (290)
T PRK12870          5 LEPTWLAIIRLLRWDKPAGRLILMIPALWAVFLAAHGL--PPLPL---VGIIILGALATSAAGCVVNDLWDRDIDPQVER   79 (290)
T ss_pred             cchhHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHccCC--CCHHH---HHHHHHHHHHHHHHHHHHHhHHHhccCCCCCc
Confidence            567899999999999977665   57777887775432  23222   2345678899999999999999999998653 


Q ss_pred             -CCCcccCCccCHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhHhccCCCCCccccccCchhHHHHHHHHHhH
Q 028504           80 -PYLPLACGDFSMGEGLAITIASPLMAVAMGIMLRSPPLVIGFIIWCIVGGAYSIDLPPLLRWKGNPLMAAVTIISMNGL  158 (208)
Q Consensus        80 -~~RPl~sG~is~~~a~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~Ys~~~P~p~~lK~~~~~~~~~v~~~~g~  158 (208)
                       ++||+|||++|++||..++.++.++++.++..+|+.+..++.... .+.+.|+.       .||++.++++.++...|.
T Consensus        80 t~~RPL~sG~is~~~a~~~~~~~~~~~~~l~~~l~~~~~~l~~~~~-~~~~~Y~~-------~KR~t~~~~~~lg~~~~~  151 (290)
T PRK12870         80 TRFRPLASRRLSVKVGIVIAIVALLCAAGLAFFLNPLSFWLCVAAV-PVIFLYPL-------AKRVFPVPQLVLAIAWGF  151 (290)
T ss_pred             ccCCCCCCCCcCHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH-HHHHHhhh-------hhhccccceeeehHHHHh
Confidence             489999999999999999999999999999999998888777655 47788865       899999999988888775


Q ss_pred             HHHHHHHHHHHHHHhcCCccccHHHHHHHHHHHHHHHHHHHhhcCCcccC
Q 028504          159 LLLFPFFIHFQKIVLGNPVAFTKPVLFTAAYMVIWNAAIAFVKVTNSEIE  208 (208)
Q Consensus       159 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~D~~~  208 (208)
                      .+..| +..    . .+.  .+...+++.+...+|..+.++.|+.+|+|+
T Consensus       152 ~~l~g-~~a----~-~g~--~~~~~~~l~~~~~lw~~~~d~~~a~~D~e~  193 (290)
T PRK12870        152 AVLIS-WSA----V-TGH--LDLGTWLLWAATVFWTLGFDTVYAMSDRED  193 (290)
T ss_pred             HHHHH-HHH----H-cCC--CCHHHHHHHHHHHHHHHHHHHHHHhhhHhh
Confidence            43333 332    1 222  234445566677889999999999999985

>PRK05951 ubiA prenyltransferase; Reviewed

Probab=99.96  E-value=3.2e-27  Score=202.43  Aligned_cols=188  Identities=14%  Similarity=0.158  Sum_probs=147.4

Q ss_pred             HHHHHHHhhhchhhHHHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHhhhhhhh--hccccCC---C
Q 028504            6 KKCDAFYRLTRPYSCVSIIAALLSVSLLPLQSPADFTPKLIIEAFKCMVPAIMMNNYANAINQLADV--HIDKVNK---P   80 (208)
Q Consensus         6 ~~~~~~l~l~Rp~~~~~~~~~~~~g~~la~~~~~~~~~~~~~~~l~~~l~~~l~~~a~~~iNd~~D~--~~D~~~~---~   80 (208)
                      +++|.|++.+||++...+..++..|..++.....++++..   .++.+++..++++++|.+|||+|+  |.|+.++   |
T Consensus         2 ~~~~~~~~~~Rp~tl~~s~~~v~lG~a~a~~~~~~f~~~~---~ll~~l~~~l~~~~~n~~Ndy~D~~~g~D~~~rt~~~   78 (296)
T PRK05951          2 QNAKLFFIFTRPWSFVMTAIVAFFSIAYGYYLFRSFDPLL---GALMLLGYFLLHASLNVFNDYKDYVLDCDHHETTGYR   78 (296)
T ss_pred             ccHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhcCCcCHHH---HHHHHHHHHHHHHHHHHHHhHHHHhcCCccccccCCC
Confidence            5678999999999999999999999888864324566433   344568999999999999999995  4555432   7


Q ss_pred             CCcccCCccCHHHHHHHHHHHHHHHHHHHHH----hhHHHHHHHHHHHHHHhHhccCCCCCccccccCchhHHHHHHHHH
Q 028504           81 YLPLACGDFSMGEGLAITIASPLMAVAMGIM----LRSPPLVIGFIIWCIVGGAYSIDLPPLLRWKGNPLMAAVTIISMN  156 (208)
Q Consensus        81 ~RPl~sG~is~~~a~~~~~~l~~~~~~l~~~----~~~~~~~~~~~~~~~~~~~Ys~~~P~p~~lK~~~~~~~~~v~~~~  156 (208)
                      +||+++|++|++|++..+.++..+++.++..    .+.+.+.+++++. ..++.||.  | |+++|++ .+|++.++..+
T Consensus        79 ~r~l~~G~is~~~~~~~~~~~~~ia~~~g~~l~~~~~~~~l~l~~~~~-~~~~~Yt~--~-P~~lky~-glGe~~v~~~~  153 (296)
T PRK05951         79 QHPIQAGIMTLGHLRVLGIALGAIALQLGWSLVLDRGIGAVTLALLGV-FLWTCYMG--P-PFFLKYR-WLGEHLVFYAW  153 (296)
T ss_pred             CCccccCCcCHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHH-HHHHHHcC--C-CcccCCC-CchHHHHHHHH
Confidence            8999999999999999999988887665433    3555555655544 69999999  6 8888854 68999999999


Q ss_pred             hHHHHHHHHHHHHHHHhcCCccccHHHHHHHHHHHHHHHHHHHhhcCCcccC
Q 028504          157 GLLLLFPFFIHFQKIVLGNPVAFTKPVLFTAAYMVIWNAAIAFVKVTNSEIE  208 (208)
Q Consensus       157 g~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~D~~~  208 (208)
                      |+.+.+|.++. +++.      ++...+......++...++.++||+||+|+
T Consensus       154 g~~~vlg~~~~-~~~~------~~~~~~~~sl~~~l~~~~il~~n~~~D~e~  198 (296)
T PRK05951        154 SHMLVMGLIYV-WLGN------LSSPNLLAGVPLGLLMALVLLSNNLRDIED  198 (296)
T ss_pred             HHHHHHHHHHH-HhCc------ccHHHHHHHHHHHHHHHHHHHHCCCccchh
Confidence            99988888766 3322      345555667777888888999999999986

>PRK04375 protoheme IX farnesyltransferase; Provisional

Probab=99.96  E-value=2.6e-27  Score=202.99  Aligned_cols=184  Identities=14%  Similarity=0.103  Sum_probs=137.3

Q ss_pred             HHHHHHHHHhhhchhhHHHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhccccCC--CC
Q 028504            4 LNKKCDAFYRLTRPYSCVSIIAALLSVSLLPLQSPADFTPKLIIEAFKCMVPAIMMNNYANAINQLADVHIDKVNK--PY   81 (208)
Q Consensus         4 ~~~~~~~~l~l~Rp~~~~~~~~~~~~g~~la~~~~~~~~~~~~~~~l~~~l~~~l~~~a~~~iNd~~D~~~D~~~~--~~   81 (208)
                      -++++++|+|++||+++....++++.|.+++.+.  ..++..   .++.+++++++++++|++|||+|+|+|++|+  |+
T Consensus         6 ~~~~~~~y~~L~rp~~~~~~~~~~~~G~~la~~~--~~~~~~---~~l~~l~~~l~~aa~~~iNd~~D~~iD~~~~Rt~~   80 (296)
T PRK04375          6 SRATLKDYLALTKPRVISLNLFTALGGMLLAPPG--VPPLLL---LLLTLLGIALVAGAAGALNNYIDRDIDAKMERTKN   80 (296)
T ss_pred             hhhhHHHHHHHhHHHHHHHHHHHHHHHHHHhcCC--CCCHHH---HHHHHHHHHHHHHHHHHHHhHHhhccCCCCCccCC
Confidence            4578999999999999999999999999988542  233322   2345679999999999999999999999976  79


Q ss_pred             CcccCCccCHHHHHHHHHHHHHHHHHHHHH-hhHHHHHHHHHHHHHHhHhccCCCCCccccccCchhHHHHHHHHHhHHH
Q 028504           82 LPLACGDFSMGEGLAITIASPLMAVAMGIM-LRSPPLVIGFIIWCIVGGAYSIDLPPLLRWKGNPLMAAVTIISMNGLLL  160 (208)
Q Consensus        82 RPl~sG~is~~~a~~~~~~l~~~~~~l~~~-~~~~~~~~~~~~~~~~~~~Ys~~~P~p~~lK~~~~~~~~~v~~~~g~~~  160 (208)
                      ||+|||++|++||+.++..+.++++.++.. .|+.+..++.++.+.+.+.||.      ++||++ .+|..++...|...
T Consensus        81 Rpl~sG~is~~~a~~~~~~l~~~g~~l~~~l~~~~~~~l~~~~~~~~~~~Ys~------~lKr~~-~~~~~v~~~~g~~~  153 (296)
T PRK04375         81 RPLVTGRISPREALIFGLVLGVLGFLLLGLFVNPLAAWLTLAGIFFYVVVYTL------WLKRRT-PQNIVIGGAAGAMP  153 (296)
T ss_pred             CCCCCCCcCHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhcc------chhcCC-ccchHHHHHHHHhH
Confidence            999999999999999999999999988755 5777666665554446778986      699988 57877777777555


Q ss_pred             HHHHHHHHHHHHhcCCccccHHHHHHHHHHHHHHHHHH---HhhcCCcc
Q 028504          161 LFPFFIHFQKIVLGNPVAFTKPVLFTAAYMVIWNAAIA---FVKVTNSE  206 (208)
Q Consensus       161 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~k~~~D~  206 (208)
                      ++..++. +    .+.  ++...+++.+...++.....   ..+|.||.
T Consensus       154 ~l~g~~a-~----~g~--~~~~~~~l~~~~~lw~~~~~~~~~~~d~~D~  195 (296)
T PRK04375        154 PLIGWAA-V----TGS--LSWEALILFLIIFLWTPPHFWALAIFRKDDY  195 (296)
T ss_pred             HHHHHHH-h----CCC--CCHHHHHHHHHHHHHHHHHHHHHHHHHHhhH
Confidence            4444443 1    122  34444445556666664444   36777775

>PRK13362 protoheme IX farnesyltransferase; Provisional

Probab=99.95  E-value=4.7e-27  Score=201.96  Aligned_cols=184  Identities=14%  Similarity=0.201  Sum_probs=135.1

Q ss_pred             HHHHHHHHHhhhchhhHHHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhccccCC--CC
Q 028504            4 LNKKCDAFYRLTRPYSCVSIIAALLSVSLLPLQSPADFTPKLIIEAFKCMVPAIMMNNYANAINQLADVHIDKVNK--PY   81 (208)
Q Consensus         4 ~~~~~~~~l~l~Rp~~~~~~~~~~~~g~~la~~~~~~~~~~~~~~~l~~~l~~~l~~~a~~~iNd~~D~~~D~~~~--~~   81 (208)
                      .++++|+|++++||+++..+.+++..|++++..+  +.++..   .+.++++.++.++++|++|||+|+|+||+|+  |+
T Consensus         9 ~~~~l~~~~~L~RP~~~~~~~~~~~~G~~la~~~--~~~~~~---~~~~~lg~~l~~aaa~~~Nd~~D~~iD~~~~Rt~~   83 (306)
T PRK13362          9 WEASLKDYIQVTKPGIIFGNVISVAGGFFLASKG--HVDPVL---MLAAVIGLSLVVASGCALNNCIDRDIDAKMQRTRN   83 (306)
T ss_pred             HHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHccC--CCCHHH---HHHHHHHHHHHHHHHHHHhChHHhCcCCCCCCCCC
Confidence            4567899999999999999999999999888432  233322   2345578899999999999999999999764  69


Q ss_pred             CcccCCccCHHHHHHHHHHHHHHHHHHH-HHhhHHHHHHHHHHHHHHhHhccCCCCCccccccCchhHHHHHHHHHhHHH
Q 028504           82 LPLACGDFSMGEGLAITIASPLMAVAMG-IMLRSPPLVIGFIIWCIVGGAYSIDLPPLLRWKGNPLMAAVTIISMNGLLL  160 (208)
Q Consensus        82 RPl~sG~is~~~a~~~~~~l~~~~~~l~-~~~~~~~~~~~~~~~~~~~~~Ys~~~P~p~~lK~~~~~~~~~v~~~~g~~~  160 (208)
                      ||+|||++|++||+.++.++..+|+.++ ...|+....++.++.+.+.++||.      ++||++.++++..+...+..+
T Consensus        84 RPlpsG~is~~~A~~~~~~l~~~g~~ll~~~~n~~~~~l~~~~~~~~~~~Yt~------~lKr~t~~~~~vgg~~ga~p~  157 (306)
T PRK13362         84 RVTVTGEISLGEALGFGLALGVAGFGLLAAFTNPLAALFAAFGYVVYVGVYSL------YLKRNSVYGTLVGSLSGAMPP  157 (306)
T ss_pred             CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhH------HHhccCcHhHHHHHHHHHHHH
Confidence            9999999999999999999999998865 456877766665555457789986      699999999987766655444


Q ss_pred             HHHHHHHHHHHHhcCCccccHHHHHHHHHHHHHHHHHHH---hhcCCcc
Q 028504          161 LFPFFIHFQKIVLGNPVAFTKPVLFTAAYMVIWNAAIAF---VKVTNSE  206 (208)
Q Consensus       161 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~k~~~D~  206 (208)
                      ..| +..     .++.  .+...+++...+.+|...-..   .+|.+|.
T Consensus       158 l~G-~~a-----~~g~--~~~~~~~l~~~~~~W~~~h~~~~ai~~~~Dy  198 (306)
T PRK13362        158 VVG-YCA-----VTGQ--FDAGALILLLMFSLWQMPHSYAIAIFRFNDY  198 (306)
T ss_pred             HHH-HHH-----HcCC--CcHHHHHHHHHHHHHHHHHHHHHHHHhHhhH
Confidence            344 333     1222  234445556666677655442   3444554

>PRK12888 ubiA prenyltransferase; Reviewed

Probab=99.95  E-value=3.5e-27  Score=200.99  Aligned_cols=183  Identities=14%  Similarity=0.111  Sum_probs=141.4

Q ss_pred             HHHHHHhhhchhhHHHHHHHHHHHHHhcCC-CCCCCCHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhccccCC--CCCc
Q 028504            7 KCDAFYRLTRPYSCVSIIAALLSVSLLPLQ-SPADFTPKLIIEAFKCMVPAIMMNNYANAINQLADVHIDKVNK--PYLP   83 (208)
Q Consensus         7 ~~~~~l~l~Rp~~~~~~~~~~~~g~~la~~-~~~~~~~~~~~~~l~~~l~~~l~~~a~~~iNd~~D~~~D~~~~--~~RP   83 (208)
                      |+++|+|++||+|.+.....++.+.+.+.. ..+..++..   .++..++++++++++|++|||+|+|+|++|+  |+||
T Consensus         1 ~~~~~~~l~r~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~---~~l~~l~~~l~~~a~~~~Nd~~Dr~iD~~~~RT~~RP   77 (284)
T PRK12888          1 RVRAFLRLVAIEHSVFALPFAYIAALTAMFASDGSVHWAD---LLLVTVAMVGARTFAMAANRIIDREIDARNPRTAGRE   77 (284)
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHH---HHHHHHHHHHHHHHHHHHHhHHhhCCCCCCCCCCCCC
Confidence            468999999999999987777777666531 012233322   2345679999999999999999999999986  7999


Q ss_pred             ccCCccCHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhHhccCCCCCccccccCchhHHHHHHHHHhHHHHHH
Q 028504           84 LACGDFSMGEGLAITIASPLMAVAMGIMLRSPPLVIGFIIWCIVGGAYSIDLPPLLRWKGNPLMAAVTIISMNGLLLLFP  163 (208)
Q Consensus        84 l~sG~is~~~a~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~Ys~~~P~p~~lK~~~~~~~~~v~~~~g~~~~~g  163 (208)
                      +|+|++|++||+.++..+.+.++.++..+|+.+..++.+.. .....|+.       .||++.++++..+...+..+..|
T Consensus        78 L~sG~is~~~a~~~~~~~~~~~l~l~~~l~~~~~~l~~~~~-~~~~~Y~~-------~Kr~t~~~~~~lg~~~~~~~l~g  149 (284)
T PRK12888         78 LVTGAVSVRTAWTGALVALAVFLGAAALLNPLCLALAPLAV-APLVVYPY-------AKRFTNFPHAILGLAQAVGPVGA  149 (284)
T ss_pred             CCCCCCCHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH-HHHHHHHH-------hhcccchhhHHHHHHHHHHHHHH
Confidence            99999999999999999888888888888988887776655 35678864       89999999999888877544433


Q ss_pred             HHHHHHHHHhcCCccccHHHHHHHHHHHHHHHHHHHhhcCCcccC
Q 028504          164 FFIHFQKIVLGNPVAFTKPVLFTAAYMVIWNAAIAFVKVTNSEIE  208 (208)
Q Consensus       164 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~D~~~  208 (208)
                       ++. ++   | .  ++...+++.+...+|..+.++.|+.+|.|+
T Consensus       150 -~~a-~~---g-~--~~~~~~ll~~~~~~w~~~~~~i~a~~D~e~  186 (284)
T PRK12888        150 -WIA-VT---G-T--WSWPAVLLGLAVGLWIGGFDLIYACQDAEV  186 (284)
T ss_pred             -HHH-Hc---C-C--CCHHHHHHHHHHHHHHHHHHHHHHhhhHHH
Confidence             433 11   2 2  344555666778889999999999999984

>PRK12848 ubiA 4-hydroxybenzoate octaprenyltransferase; Reviewed

Probab=99.95  E-value=6.5e-27  Score=199.27  Aligned_cols=183  Identities=17%  Similarity=0.149  Sum_probs=139.8

Q ss_pred             HHHHHHHHhhhchhhHHHHH---HHHHHHHHhcCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhccccCC--
Q 028504            5 NKKCDAFYRLTRPYSCVSII---AALLSVSLLPLQSPADFTPKLIIEAFKCMVPAIMMNNYANAINQLADVHIDKVNK--   79 (208)
Q Consensus         5 ~~~~~~~l~l~Rp~~~~~~~---~~~~~g~~la~~~~~~~~~~~~~~~l~~~l~~~l~~~a~~~iNd~~D~~~D~~~~--   79 (208)
                      ++++++|+|++|++++....   ++++.|..++.++.+  +...   .++..++.+++++++|++|||+|+|+||+|+  
T Consensus         2 ~~~~~~y~~L~R~~kp~~~~l~~~p~~~g~~la~~~~~--~~~~---~~l~~~g~~l~~~a~~~~Nd~~D~~iD~~~~Rt   76 (282)
T PRK12848          2 QNRLLAYARLMRLDKPIGTLLLLWPTLWALWLAADGIP--DLWV---LVVFVLGVFLMRAAGCVINDYADRDFDGHVKRT   76 (282)
T ss_pred             chhHHHHHHHHCccchHHHHHHHHHHHHHHHHHcCCCC--CHHH---HHHHHHHHHHHHHHHHHHHhhHHhccCCCCCCC
Confidence            56899999999977665444   556678877754322  2221   2344578889999999999999999999754  


Q ss_pred             CCCcccCCccCHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhHhccCCCCCccccccCchhHHHHHHHHHhHH
Q 028504           80 PYLPLACGDFSMGEGLAITIASPLMAVAMGIMLRSPPLVIGFIIWCIVGGAYSIDLPPLLRWKGNPLMAAVTIISMNGLL  159 (208)
Q Consensus        80 ~~RPl~sG~is~~~a~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~Ys~~~P~p~~lK~~~~~~~~~v~~~~g~~  159 (208)
                      |+||+|||++|++||..++..+..+++.+++.+|+....++.+.. +..+.|+.       .||++.++++.++...|..
T Consensus        77 ~~RPl~sG~is~~~a~~~~~~l~~~~~~l~~~l~~~~~~l~~~~~-~~~~~Y~~-------~Kr~~~~~~~~~g~~~g~~  148 (282)
T PRK12848         77 KNRPLASGAVSEKEALALFVVLVLVAFLLVLTLNTLTIWLSVAAL-ALAWIYPF-------MKRYTHLPQVVLGAAFGWG  148 (282)
T ss_pred             CCCCCCCCCcCHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH-HHHHHHHh-------HHhcCcccHHHHHHHHHHH
Confidence            689999999999999999999999999988889988888776655 46788854       7999999999888888865


Q ss_pred             HHHHHHHHHHHHHhcCCccccHHHHHHHHHHHHHHHHHHHhhcCCcccC
Q 028504          160 LLFPFFIHFQKIVLGNPVAFTKPVLFTAAYMVIWNAAIAFVKVTNSEIE  208 (208)
Q Consensus       160 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~D~~~  208 (208)
                      +..|....      ++.  .+...+++.+...++..+....++.+|.|+
T Consensus       149 ~~~g~~a~------~~~--~~~~~~~l~~~~~~w~~~~~~~~a~~D~e~  189 (282)
T PRK12848        149 IPMAFAAV------QGS--VPLEAWLLFLANILWTVAYDTQYAMVDRDD  189 (282)
T ss_pred             HHHHHHHH------hCC--CcHHHHHHHHHHHHHHHHHHHHHHhccHhh
Confidence            54443221      222  334445556677888888999999999985

>PRK06080 1,4-dihydroxy-2-naphthoate octaprenyltransferase; Validated

Probab=99.95  E-value=8.5e-27  Score=199.42  Aligned_cols=185  Identities=18%  Similarity=0.178  Sum_probs=146.3

Q ss_pred             HHHHHhhhchhhHHHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHhhhhhhh--hcccc--CCCCCc
Q 028504            8 CDAFYRLTRPYSCVSIIAALLSVSLLPLQSPADFTPKLIIEAFKCMVPAIMMNNYANAINQLADV--HIDKV--NKPYLP   83 (208)
Q Consensus         8 ~~~~l~l~Rp~~~~~~~~~~~~g~~la~~~~~~~~~~~~~~~l~~~l~~~l~~~a~~~iNd~~D~--~~D~~--~~~~RP   83 (208)
                      +|+|++++||+++..+.++++.|..++... ..+++..   .++.+++.++.++++|.+|||+|+  |+|+.  ++|+||
T Consensus         3 ~~~~~~~~Rp~~~~~~~~p~l~G~~~a~~~-~~~~~~~---~ll~~l~~~l~~~~~n~~Ndy~D~~~g~D~~~~~~~~r~   78 (293)
T PRK06080          3 FKAWLELARPKTLPAAFAPVLVGTALAYWL-GSFHPLL---ALLALLAALLLQIATNLANDYGDYVKGTDTEDRVGPLRA   78 (293)
T ss_pred             HHHHHHHhhHHHHHHHHHHHHHHHHHHHHc-CCccHHH---HHHHHHHHHHHHHHHHHHHhHHHhccCCCcccccCCccc
Confidence            688999999999999999999998887432 2344322   345567899999999999999999  57854  568999


Q ss_pred             ccCCccCHHHHHHHHHHHHHHHHHHHHHh----hHHHHHHHHHHHHHHhHhccCCCCCccccccCchhHHHHHHHHHhHH
Q 028504           84 LACGDFSMGEGLAITIASPLMAVAMGIML----RSPPLVIGFIIWCIVGGAYSIDLPPLLRWKGNPLMAAVTIISMNGLL  159 (208)
Q Consensus        84 l~sG~is~~~a~~~~~~l~~~~~~l~~~~----~~~~~~~~~~~~~~~~~~Ys~~~P~p~~lK~~~~~~~~~v~~~~g~~  159 (208)
                      +++|++|++|++.++..+.++++.++..+    +++...+++++. ..++.||.  | |+++|++ .+||+.++..+|..
T Consensus        79 l~~G~is~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~-~~~~~Ys~--~-p~~~~~~-glge~~~~~~~G~~  153 (293)
T PRK06080         79 IGRGGISPKQVKRAAIAFFGLAALLGLYLVAVSGWWLLLLGLLCI-AAAILYTG--G-PKPYGYT-GLGELFVGVFFGLV  153 (293)
T ss_pred             ccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH-HHhhhhcC--C-CCccCCC-CcHHHHHHHHHHHH
Confidence            99999999999999999998887766543    555555555444 58899999  5 7777765 57999999999988


Q ss_pred             HHHHHHHHHHHHHhcCCccccHHHHHHHHHHHHHHHHHHHhhcCCcccC
Q 028504          160 LLFPFFIHFQKIVLGNPVAFTKPVLFTAAYMVIWNAAIAFVKVTNSEIE  208 (208)
Q Consensus       160 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~D~~~  208 (208)
                      +..+.++. +++      ..+.+.++...+.+++..++.++||++|+|+
T Consensus       154 ~~~~~~~~-~~~------~~~~~~~~~~l~~~l~~~~~~~~n~~~D~~~  195 (293)
T PRK06080        154 IVLGTYYL-QAG------TVDSAVFLPALPCGLLIGAVLLANNIRDIET  195 (293)
T ss_pred             HHHHHHHH-hcC------CCCHHHHHHHHHHHHHHHHHHHhcCCCcchh
Confidence            77776554 321      1456677778888999999999999999986

>PRK12324 phosphoribose diphosphate:decaprenyl-phosphate phosphoribosyltransferase; Provisional

Probab=99.95  E-value=6.3e-27  Score=199.85  Aligned_cols=178  Identities=17%  Similarity=0.266  Sum_probs=131.4

Q ss_pred             HHHHHHHHHhhhchhhHHHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhccccC--CCC
Q 028504            4 LNKKCDAFYRLTRPYSCVSIIAALLSVSLLPLQSPADFTPKLIIEAFKCMVPAIMMNNYANAINQLADVHIDKVN--KPY   81 (208)
Q Consensus         4 ~~~~~~~~l~l~Rp~~~~~~~~~~~~g~~la~~~~~~~~~~~~~~~l~~~l~~~l~~~a~~~iNd~~D~~~D~~~--~~~   81 (208)
                      .++++++|+|++||++|.++.+....+ +++... .+  +..+...++++++.+++++++|++||++|+|+||+|  ||+
T Consensus         7 ~~~~l~~~l~L~RP~~w~~nll~~~~~-~~a~~~-~~--~~~~~~~llafl~~~l~~sa~y~iND~~D~e~Dr~~prk~~   82 (295)
T PRK12324          7 PKNLLAGYLKLLRPKQWIKNLFVFAAP-IFAGNL-LN--PGALLKVLLAFVLFCLASSAVYLVNDIRDVEADRLHPTKRN   82 (295)
T ss_pred             hHHHHHHHHHHhCchHHHHHHHHHHHH-HHHHhh-cc--cchHHHHHHHHHHHHHHHHHHHHHHhHHHHHhhccCCCCCC
Confidence            456899999999999999998865544 444321 11  111223345667778899999999999999999996  789


Q ss_pred             CcccCCccCHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhHhccCCCCCccccccCchhHHHHHHHHHhHHHH
Q 028504           82 LPLACGDFSMGEGLAITIASPLMAVAMGIMLRSPPLVIGFIIWCIVGGAYSIDLPPLLRWKGNPLMAAVTIISMNGLLLL  161 (208)
Q Consensus        82 RPl~sG~is~~~a~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~Ys~~~P~p~~lK~~~~~~~~~v~~~~g~~~~  161 (208)
                      ||+|||++|+++|+.++.++..+|+.+++.+|+....+.... +++.++||.      ++||++.+++++++..++..+.
T Consensus        83 RPlasG~is~~~A~~~~~~l~~~~l~la~~l~~~~~~~~~~~-~~~~~~Ys~------~lK~~~~~d~l~va~~~~lr~~  155 (295)
T PRK12324         83 RPIASGVVSVSLAYILAVVLLVASLALAYLLSPKLALVLLVY-LVLNLAYSF------KLKHQPVLDVFCIASGFVLRAI  155 (295)
T ss_pred             CCCCCCccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHhhH------HhcCCchhhHHHHHHHHHHHHH
Confidence            999999999999999999999999999888888777665444 468899998      7999999999999888775554


Q ss_pred             HHHHHHHHHHHhcCCccccHHHHHHHHHHHHHHHHHHHhhcC
Q 028504          162 FPFFIHFQKIVLGNPVAFTKPVLFTAAYMVIWNAAIAFVKVT  203 (208)
Q Consensus       162 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~  203 (208)
                      .|..      ..+  ...|.++..++.+.++|   ....|..
T Consensus       156 ~G~~------a~~--~~~s~wll~~~~~~~lf---la~~kR~  186 (295)
T PRK12324        156 AGGV------AIG--VPLSPWLLLCTALLSLF---LAAGKRK  186 (295)
T ss_pred             HHHH------HhC--CCccHHHHHHHHHHHHH---HHHHHHH
Confidence            4432      222  34666665544444433   3444443

>PRK13387 1,4-dihydroxy-2-naphthoate octaprenyltransferase; Provisional

Probab=99.95  E-value=1.6e-26  Score=199.64  Aligned_cols=192  Identities=15%  Similarity=0.090  Sum_probs=146.1

Q ss_pred             HHHHHhhhchhhHHHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhccccC----CCCCc
Q 028504            8 CDAFYRLTRPYSCVSIIAALLSVSLLPLQSPADFTPKLIIEAFKCMVPAIMMNNYANAINQLADVHIDKVN----KPYLP   83 (208)
Q Consensus         8 ~~~~l~l~Rp~~~~~~~~~~~~g~~la~~~~~~~~~~~~~~~l~~~l~~~l~~~a~~~iNd~~D~~~D~~~----~~~RP   83 (208)
                      +|.|++++||++...++.+++.|..++....+++++..   .++.+++.++.|+++|.+|||+|.+.|+-+    +++|+
T Consensus         3 ~~~~~~~~Rp~tl~~s~~pvllG~a~a~~~~~~~~~~~---~ll~ll~~~~~~~~~N~~NDy~D~~~g~D~~~~~~~~~~   79 (317)
T PRK13387          3 AKLFLKLVEIHTKIASFFPVILGTLFSLYVAKIFDWLL---FLAFMVAMLAFDIATTAINNYMDFKKALDTADYVGIGNG   79 (317)
T ss_pred             HHHHHHHHhHHHHHHHHHHHHHHHHHHHHhCCCccHHH---HHHHHHHHHHHHHHHHHHHhHHHHhcCCCcccccCCcch
Confidence            57899999999999999999999988753323455432   234567888999999999999998754433    37899


Q ss_pred             ccCCccCHHHHHHHHHHHHHHHHHHH----HHhhHHHHHHHHHHHHHHhHhccCCCCCccccccCchhHHHHHHHHHhHH
Q 028504           84 LACGDFSMGEGLAITIASPLMAVAMG----IMLRSPPLVIGFIIWCIVGGAYSIDLPPLLRWKGNPLMAAVTIISMNGLL  159 (208)
Q Consensus        84 l~sG~is~~~a~~~~~~l~~~~~~l~----~~~~~~~~~~~~~~~~~~~~~Ys~~~P~p~~lK~~~~~~~~~v~~~~g~~  159 (208)
                      +++|.+|+|+++..+..+..++.+++    +..++..+.+++++. ..++.||.  | |+++|+++ +||+.++..+|+.
T Consensus        80 i~~~~ls~~~v~~~~~~~~~ia~~~Gl~L~~~~g~~~l~igl~g~-~~~~~Yt~--g-P~~l~y~g-LGe~~v~i~~G~~  154 (317)
T PRK13387         80 IGQHGLKPRNVLTVILLMYVVAAILGVYLCMNTSWLLLVIGLICF-AIGILYTG--G-PLPLSRMP-LGEIFSGLTMGFG  154 (317)
T ss_pred             hccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcHHHHHHHHHHH-HHhhhhcC--C-CcccccCc-cHHHHHHHHHHHH
Confidence            99999999999999999999988754    445655666665554 68999999  6 99999887 8999999999998


Q ss_pred             HHHHHHHHHHHHHhcCC-c---------cccH----HHHHHHHHHHHHHHHHHHhhcCCcccC
Q 028504          160 LLFPFFIHFQKIVLGNP-V---------AFTK----PVLFTAAYMVIWNAAIAFVKVTNSEIE  208 (208)
Q Consensus       160 ~~~g~~~~~~~~~~~~~-~---------~~~~----~~~~~~~~~~~~~~~~~~~k~~~D~~~  208 (208)
                      +..|.++. |++..... +         .++.    ..++.+...++...+++++||+||+||
T Consensus       155 ~v~g~~yv-~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~slp~g~l~~~ill~Nn~~D~e~  216 (317)
T PRK13387        155 IFLLAVYI-NTNTITIESLLFQGEMFTIQGNLIAIIAIGVISLPIIFTIANIMLANNLRDLDE  216 (317)
T ss_pred             HHHHHHHH-hcCCCchHHHHhcccchhhcchhHHHHHHHHHHHHHHHHHHHHHHhcCCccchh
Confidence            88887665 43221100 0         0000    112367778888889999999999996

>TIGR01473 cyoE_ctaB protoheme IX farnesyltransferase

Probab=99.95  E-value=3.3e-26  Score=194.72  Aligned_cols=148  Identities=20%  Similarity=0.223  Sum_probs=118.3

Q ss_pred             HHHHhhhchhhHHHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhccccCC--CCCcccC
Q 028504            9 DAFYRLTRPYSCVSIIAALLSVSLLPLQSPADFTPKLIIEAFKCMVPAIMMNNYANAINQLADVHIDKVNK--PYLPLAC   86 (208)
Q Consensus         9 ~~~l~l~Rp~~~~~~~~~~~~g~~la~~~~~~~~~~~~~~~l~~~l~~~l~~~a~~~iNd~~D~~~D~~~~--~~RPl~s   86 (208)
                      |+|+|++||+++..+..+++.|.+++.+.. +.++..   .++..++++++++++|++|||+|+|+|++|+  |+||+||
T Consensus         1 ~~~~~l~rp~~~~~~~~~~~~g~~la~~~~-~~~~~~---~~l~~~~~~l~~~a~~~~Nd~~D~~iD~~~~Rt~~Rpl~s   76 (280)
T TIGR01473         1 KDYLQLTKPRIISLLLITAFAGMWLAPGGA-LVNPPL---LLLTLLGTTLAAASANAFNMYIDRDIDKKMKRTRNRPLVT   76 (280)
T ss_pred             CchHHHccHHHHHHHHHHHHHHHHHhCCCC-CCCHHH---HHHHHHHHHHHHHHHHHHHhhcccCcCCCCCCCCCCCCCC
Confidence            469999999999999999999999885431 133322   2345678999999999999999999999865  7999999


Q ss_pred             CccCHHHHHHHHHHHHHHHHHH-HHHhhHHHHHHHHHHHHHHhHhccCCCCCccccccCchhHHHHHHHHHhHHHHHHHH
Q 028504           87 GDFSMGEGLAITIASPLMAVAM-GIMLRSPPLVIGFIIWCIVGGAYSIDLPPLLRWKGNPLMAAVTIISMNGLLLLFPFF  165 (208)
Q Consensus        87 G~is~~~a~~~~~~l~~~~~~l-~~~~~~~~~~~~~~~~~~~~~~Ys~~~P~p~~lK~~~~~~~~~v~~~~g~~~~~g~~  165 (208)
                      |++|++||..++..+.++|+.+ ...+|+....++.++.+.+.++||.      .+||++.+ +..++...|...+++.|
T Consensus        77 G~is~~~a~~~~~~~~~~g~~il~~~~~~~~~~l~~~~~~~~~~~Yt~------~lKr~~~~-~~~v~~~~g~~~~l~g~  149 (280)
T TIGR01473        77 GRISPREALAFGLLLGVLGVAILAAFVNPLAALLGLFGIFFYVIVYTI------WLKRRTPQ-NTVIGGFAGAVPPLIGW  149 (280)
T ss_pred             CCcCHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhhcCh------hhccCCch-hHHHHHHHHHHHHHHHH
Confidence            9999999999999999999884 5558888777776655445889997      48998876 55566677777767766


Q ss_pred             HH
Q 028504          166 IH  167 (208)
Q Consensus       166 ~~  167 (208)
                      +.
T Consensus       150 ~a  151 (280)
T TIGR01473       150 AA  151 (280)
T ss_pred             HH
Confidence            54

This model describes protoheme IX farnesyltransferase, also called heme O synthase, an enzyme that creates an intermediate in the biosynthesis of heme A. Prior to the description of its enzymatic function, this protein was often called a cytochrome o ubiquinol oxidase assembly factor.

>PRK12878 ubiA 4-hydroxybenzoate polyprenyltransferase; Reviewed

Probab=99.94  E-value=5.5e-26  Score=196.09  Aligned_cols=186  Identities=15%  Similarity=0.143  Sum_probs=143.4

Q ss_pred             HHHHHHHHHhhh---chhhHHHHHHHHHHHHHhcCCCCC---CCCHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhcccc
Q 028504            4 LNKKCDAFYRLT---RPYSCVSIIAALLSVSLLPLQSPA---DFTPKLIIEAFKCMVPAIMMNNYANAINQLADVHIDKV   77 (208)
Q Consensus         4 ~~~~~~~~l~l~---Rp~~~~~~~~~~~~g~~la~~~~~---~~~~~~~~~~l~~~l~~~l~~~a~~~iNd~~D~~~D~~   77 (208)
                      +++++++|+|++   ||+......++++.|..+|.....   ..++.   ..++..++++++++++|++|||+|+|+|++
T Consensus        26 ~~~~~~~y~~L~R~~kP~~~~l~~~p~~~G~~lA~~~~~~~~~~~~~---~~~l~~l~~~l~~~a~~~~Nd~~Dr~iD~~  102 (314)
T PRK12878         26 LPPWLRPYAQLARWDRPIGWWLLLWPCWWSAALAAGAAADLGLLLLW---HLFLFFVGAIAMRGAGCTYNDIVDRDIDAK  102 (314)
T ss_pred             cchhHHHHHHHHccccchhhHHHHHHHHHHHHHhcccccCCCCCCHH---HHHHHHHHHHHHHHHHHHHHHHHHHhcccC
Confidence            457889999999   999999999999999998854211   22322   234566899999999999999999999987


Q ss_pred             CC--CCCcccCCccCHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhHhccCCCCCccccccCchhHHHHHHHH
Q 028504           78 NK--PYLPLACGDFSMGEGLAITIASPLMAVAMGIMLRSPPLVIGFIIWCIVGGAYSIDLPPLLRWKGNPLMAAVTIISM  155 (208)
Q Consensus        78 ~~--~~RPl~sG~is~~~a~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~Ys~~~P~p~~lK~~~~~~~~~v~~~  155 (208)
                      |+  |+||+|+|++|++|++.++.++.++|+.+.+..|++...++++.. +..+.|+.       .||++.+++...+..
T Consensus       103 ~~Rt~~RPl~sG~is~~~a~~~~~~~~~~g~~l~~~~~~~~~~l~~~~~-~~~~~Y~~-------~KR~t~~~~~~~Gl~  174 (314)
T PRK12878        103 VARTRSRPLPSGQVSRKQAKVFMVLQALVGLAVLLQFNWFAIALGIASL-AIVAAYPF-------MKRITWWPQFFLGLA  174 (314)
T ss_pred             CCCCCCCCCCCCCcCHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH-HHHHHHHH-------HHhcCCcchHHHHHH
Confidence            64  699999999999999999999999999988888888888887666 46888965       899888888877766


Q ss_pred             HhHHHHHHHHHHHHHHHhcCCccccHHHHHHHHHHHHHHHHHHHhhcCCcccC
Q 028504          156 NGLLLLFPFFIHFQKIVLGNPVAFTKPVLFTAAYMVIWNAAIAFVKVTNSEIE  208 (208)
Q Consensus       156 ~g~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~D~~~  208 (208)
                      .+.....| |+. ++    +.  ++...+++.....++....+.+++.+|.|+
T Consensus       175 ~~~~~l~g-~~a-~~----g~--~~~~~~~l~~~~~~w~~~~~~~~a~~D~e~  219 (314)
T PRK12878        175 FSWGALMG-WAA-HF----GS--LSLAAVLLYAGSIAWTIGYDTIYAHQDKED  219 (314)
T ss_pred             HHHHHHHH-HHH-Hh----CC--CchHHHHHHHHHHHHHHHHHHHHHhhhHhh
Confidence            55444444 332 22    22  333334445566778888889999999885

>PRK13595 ubiA prenyltransferase; Provisional

Probab=99.94  E-value=1.9e-25  Score=189.43  Aligned_cols=184  Identities=16%  Similarity=0.195  Sum_probs=135.5

Q ss_pred             HHHHHHHHhhhchhhHHHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhccccCCCCCcc
Q 028504            5 NKKCDAFYRLTRPYSCVSIIAALLSVSLLPLQSPADFTPKLIIEAFKCMVPAIMMNNYANAINQLADVHIDKVNKPYLPL   84 (208)
Q Consensus         5 ~~~~~~~l~l~Rp~~~~~~~~~~~~g~~la~~~~~~~~~~~~~~~l~~~l~~~l~~~a~~~iNd~~D~~~D~~~~~~RPl   84 (208)
                      .+.++.+++++||..|+.+..+..+|...++.. .++.+..   +.+++......+...|.+|||+|+|+|++|+|+||+
T Consensus         9 ~~~l~~ll~~sRP~~wi~t~~~~~~G~~~~g~~-~~~~~~~---~~l~~~~~~p~n~~~~giND~fD~eiDa~Npr~~~i   84 (292)
T PRK13595          9 LLPLRRLLLISRPALWVNTVGTLVTGVWLTGHL-YTLDPGV---LPLLLYLTLPFNLLIYGLNDLADRETDAASPRKGGW   84 (292)
T ss_pred             hhHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCc-ccchhHH---HHHHHHHHHHHHHHHHHHHhhhhhhhhccCCCCCCC
Confidence            456788999999999999999999999776431 2221122   223456677888999999999999999999999999


Q ss_pred             cCCccCHHHHHHHHHHHHHHH----HHHHHHhhHHHHHHHHHHHHHHhHhccCCCCCccccccCchhHHHHHHHHHhHHH
Q 028504           85 ACGDFSMGEGLAITIASPLMA----VAMGIMLRSPPLVIGFIIWCIVGGAYSIDLPPLLRWKGNPLMAAVTIISMNGLLL  160 (208)
Q Consensus        85 ~sG~is~~~a~~~~~~l~~~~----~~l~~~~~~~~~~~~~~~~~~~~~~Ys~~~P~p~~lK~~~~~~~~~v~~~~g~~~  160 (208)
                      ++|++|++|++.+..++...+    +.+++..|+....+..... +..++||.  | |+|+|++|++|+++.. .+|.. 
T Consensus        85 ~~G~is~~~~~~~~~~~~~~~~~~~l~la~~l~~~~~~l~~v~~-~l~~~YS~--p-PlRlK~rp~l~~l~~~-~~g~p-  158 (292)
T PRK13595         85 QGARLSPGEVRPLLRAVLLLNAPFLLYLALLLPPAATLLLLLYA-ALFVGYSL--P-PLRFKARPFLDGLSNA-AYALP-  158 (292)
T ss_pred             CcCccCHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH-HHHHHHcc--C-ccchhcCcchhHHHHH-HHHHH-
Confidence            999999999998766665553    4556677877777666555 69999999  8 9999999999998863 44432 


Q ss_pred             HHHHHHHHHHHHhcCCccccHHHHHHHHHHHHHHHHHHHhhcCCcccC
Q 028504          161 LFPFFIHFQKIVLGNPVAFTKPVLFTAAYMVIWNAAIAFVKVTNSEIE  208 (208)
Q Consensus       161 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~D~~~  208 (208)
                       ++..    ....|.+   ..+..+  ....+|..+.++.||++|+|.
T Consensus       159 -~~~~----~~~~g~~---~~~~~l--~a~~~w~~g~dii~ai~Dieg  196 (292)
T PRK13595        159 -LALP----ALALGAP---VPWPPL--LALMAWSVGKHAFDAAQDIPA  196 (292)
T ss_pred             -HHHH----HHHcCCc---chHHHH--HHHHHHHHHHHHHHhccChHh
Confidence             2221    2223322   122222  344577799999999999873

>TIGR01474 ubiA_proteo 4-hydroxybenzoate polyprenyl transferase, proteobacterial

Probab=99.94  E-value=1.4e-25  Score=190.92  Aligned_cols=180  Identities=18%  Similarity=0.218  Sum_probs=135.4

Q ss_pred             HHHHhhhc---hhhHHHHHHHHHHHHHhcCCCCCCC-CHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhccccCC--CCC
Q 028504            9 DAFYRLTR---PYSCVSIIAALLSVSLLPLQSPADF-TPKLIIEAFKCMVPAIMMNNYANAINQLADVHIDKVNK--PYL   82 (208)
Q Consensus         9 ~~~l~l~R---p~~~~~~~~~~~~g~~la~~~~~~~-~~~~~~~~l~~~l~~~l~~~a~~~iNd~~D~~~D~~~~--~~R   82 (208)
                      ++|.|++|   |+......++...|..++... ++. ++..   .++..++..++++++|++|||+|+|+|++|+  |+|
T Consensus         2 ~~y~~l~R~~kp~~~~l~~~~~~~g~~la~~~-~~~~~~~~---~~~~~~~~~l~~~a~~~~Nd~~D~~iD~~~~Rt~~R   77 (281)
T TIGR01474         2 LPYAKLMRADKPIGTLLLLWPCLWSLLLAAQA-GGIPPLYL---LGLFTVGAILMRGAGCVINDIWDRDFDPQVERTKSR   77 (281)
T ss_pred             hHHHHHHccccHHHHHHHHHHHHHHHHHHhcc-cCCCcHHH---HHHHHHHHHHHHHHHHHHHhHhhhcccccCCcccCC
Confidence            45665555   555556667777788887531 122 2221   2345578899999999999999999999764  699


Q ss_pred             cccCCccCHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhHhccCCCCCccccccCchhHHHHHHHHHhHHHHH
Q 028504           83 PLACGDFSMGEGLAITIASPLMAVAMGIMLRSPPLVIGFIIWCIVGGAYSIDLPPLLRWKGNPLMAAVTIISMNGLLLLF  162 (208)
Q Consensus        83 Pl~sG~is~~~a~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~Ys~~~P~p~~lK~~~~~~~~~v~~~~g~~~~~  162 (208)
                      |+|||++|++||+.++.++.++++.+++.+|+.+..++.+.. +..+.||.       .||++.++++..+...+.....
T Consensus        78 Pl~sG~is~~~a~~~~~~~~~~~~~l~~~l~~~~~~l~~~~~-~~~~~Y~~-------~Kr~~~~~~~~~g~~~~~~~~~  149 (281)
T TIGR01474        78 PLASGAVSVRQAILFLLVQLLVALGVLLQLNPLTILLGVASL-ALVATYPF-------MKRITYWPQLVLGLAFGWGALM  149 (281)
T ss_pred             CCCCCCcCHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHH-HHHHHhch-------hcccccccHHHHHHHHHHHHHH
Confidence            999999999999999999999999998889998888887666 46889975       8999999999888777765555


Q ss_pred             HHHHHHHHHHhcCCccccHHHHHHHHHHHHHHHHHHHhhcCCcccC
Q 028504          163 PFFIHFQKIVLGNPVAFTKPVLFTAAYMVIWNAAIAFVKVTNSEIE  208 (208)
Q Consensus       163 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~D~~~  208 (208)
                      |. ..    ..| .  .+...+++.+...++..+.+.+|+.+|+|+
T Consensus       150 g~-~a----~~g-~--~~~~~~ll~~~~~lw~~~~~~~~a~~D~e~  187 (281)
T TIGR01474       150 GW-AA----VTG-D--LSTAAWVLYLANILWTLGYDTIYAMQDKED  187 (281)
T ss_pred             HH-HH----HcC-C--CcHHHHHHHHHHHHHHHHHHHHHHHhhHHh
Confidence            53 22    112 2  344444455667788889999999999985

A fairly deep split by both clustering (UPGMA) and phylogenetics (NJ tree) separates this group (mostly Proteobacterial and mitochondrial), with several characterized members, from another group (mostly archaeal and Gram-positive bacterial) lacking characterized members.

>PRK08238 hypothetical protein; Validated

Probab=99.94  E-value=7e-26  Score=204.95  Aligned_cols=182  Identities=19%  Similarity=0.225  Sum_probs=138.7

Q ss_pred             HHHHHHHHHhhhchhhHHHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhccccC--CCC
Q 028504            4 LNKKCDAFYRLTRPYSCVSIIAALLSVSLLPLQSPADFTPKLIIEAFKCMVPAIMMNNYANAINQLADVHIDKVN--KPY   81 (208)
Q Consensus         4 ~~~~~~~~l~l~Rp~~~~~~~~~~~~g~~la~~~~~~~~~~~~~~~l~~~l~~~l~~~a~~~iNd~~D~~~D~~~--~~~   81 (208)
                      .+.++++|++++||++|.++++..+ +.+.+.. ..  ++..+...++++++.+++++++|++||++|+|+||+|  ||+
T Consensus       187 ~~~~~~~~~~l~Rp~q~~kn~l~~~-p~l~a~~-~~--~~~~~~~~~~~f~~~~l~~sa~~~~ND~~D~e~Dr~~~rk~~  262 (479)
T PRK08238        187 RPARLRTWLKALRVHQWAKNLLVFV-PLLAAHQ-FG--DLQALLAALLAFLAFSLCASAVYILNDLLDLEADRAHPRKRR  262 (479)
T ss_pred             CchHHHHHHHHhCCcHHHHHHHHHH-HHHHhcc-cC--ChHHHHHHHHHHHHHHHHHHHHHHHHhhHHhhhhccCCCCCC
Confidence            3457899999999999999998754 6666532 11  2222333456677889999999999999999999998  689


Q ss_pred             CcccCCccCHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhHhccCCCCCccccccCchhHHHHHHHHHhHHHH
Q 028504           82 LPLACGDFSMGEGLAITIASPLMAVAMGIMLRSPPLVIGFIIWCIVGGAYSIDLPPLLRWKGNPLMAAVTIISMNGLLLL  161 (208)
Q Consensus        82 RPl~sG~is~~~a~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~Ys~~~P~p~~lK~~~~~~~~~v~~~~g~~~~  161 (208)
                      ||+|||++|+++|+.++.+++++|+.+++.+|+........ .+++..+||.      ++||++.+++++++..++..+.
T Consensus       263 RPlasG~is~~~A~~~~~~l~~~~~~l~~~l~~~~~~~~~~-~~~~~~~Ys~------~lKr~~~~~~~~la~~~~lr~~  335 (479)
T PRK08238        263 RPFASGALPIPFGLAAAPLLLLAGLALALALGPAFLLVLLA-YLALTLAYSL------RLKRKVLVDVLTLAALYTLRII  335 (479)
T ss_pred             CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH-HHHHHHHhhH------HhcCCccccchHHHHHHHHHHH
Confidence            99999999999999999999999999999888865554444 4468899987      7999999999999888776555


Q ss_pred             HHHHHHHHHHHhcCCccccHHHHHHHHHHHHHHHHHHHhhcCCccc
Q 028504          162 FPFFIHFQKIVLGNPVAFTKPVLFTAAYMVIWNAAIAFVKVTNSEI  207 (208)
Q Consensus       162 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~D~~  207 (208)
                      .|..      +.+  +..|.++..++   .+++..++++|+..|++
T Consensus       336 ~G~~------a~~--~~~s~wll~~~---~~~~l~la~~KR~~El~  370 (479)
T PRK08238        336 AGAA------AIG--VALSFWLLAFS---MFFFLSLALVKRYTELR  370 (479)
T ss_pred             HHHH------Hhc--cCHHHHHHHHH---HHHHHHHHHHHhHHHHH
Confidence            5532      222  33444444322   24456789999988764

>PRK12876 ubiA prenyltransferase; Reviewed

Probab=99.94  E-value=4.2e-25  Score=188.43  Aligned_cols=190  Identities=13%  Similarity=0.054  Sum_probs=140.3

Q ss_pred             HHHHHHHhhhchhhHHHHHHHHHHHHHhcCC---CCCC-CCHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhccccCC--
Q 028504            6 KKCDAFYRLTRPYSCVSIIAALLSVSLLPLQ---SPAD-FTPKLIIEAFKCMVPAIMMNNYANAINQLADVHIDKVNK--   79 (208)
Q Consensus         6 ~~~~~~l~l~Rp~~~~~~~~~~~~g~~la~~---~~~~-~~~~~~~~~l~~~l~~~l~~~a~~~iNd~~D~~~D~~~~--   79 (208)
                      +|+|.|.|++|.+|.+..+.-.+.|+++|..   ...+ ++...+..+++..++++.+++++|++||++|+|+|++|+  
T Consensus         2 ~~~~~~~~~i~~~ht~Falpfa~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~a~~~~Rsag~~~Nd~~DrdiD~~~~RT   81 (300)
T PRK12876          2 MRIKYFQQLINCKYALFSALFLSASTVFALSLPEISFSLFSLGGIKTISLGGSAFFCARTVGIIVNQIIDCAIDKKNPRT   81 (300)
T ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccCCCcCCCCHHHHHHHHHHHHHHHHHHHHHHhHHHhcccCCCCCC
Confidence            4689999999999988888778889988852   0011 001112223455679999999999999999999999987  


Q ss_pred             CCCcccCCccCHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhHhccCCCCCccccccCchhHHHHHHHHHhHH
Q 028504           80 PYLPLACGDFSMGEGLAITIASPLMAVAMGIMLRSPPLVIGFIIWCIVGGAYSIDLPPLLRWKGNPLMAAVTIISMNGLL  159 (208)
Q Consensus        80 ~~RPl~sG~is~~~a~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~Ys~~~P~p~~lK~~~~~~~~~v~~~~g~~  159 (208)
                      |+||+|+|++|++||+.++..+.+.++.++..+|+.+..++.+..+ ..++||.       +||++.++++..|...+..
T Consensus        82 ~~RPLpsG~is~~~A~~~~~~~~~~~~~l~~~ln~l~~~l~~~~~~-~~~iY~~-------~KR~t~~~~~vLGl~~~~~  153 (300)
T PRK12876         82 SSRVLPAKLLSINFSMLLLTLCSFLFLSLCWLLNPLCFSLAVLSTL-LMIIYPY-------TKRVTFLCHWILGLVYYLA  153 (300)
T ss_pred             CCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH-HHHHHHh-------HhcCCchhHHHHHHHHHHH
Confidence            6999999999999999999888888888888899999888877664 5678865       9999999999888777753


Q ss_pred             HHHHHHHHHHHHHhcCCccccH--HHHHHHHHHHHHHHHHHHhhcCCcccC
Q 028504          160 LLFPFFIHFQKIVLGNPVAFTK--PVLFTAAYMVIWNAAIAFVKVTNSEIE  208 (208)
Q Consensus       160 ~~~g~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~k~~~D~~~  208 (208)
                      + ++.+.+    ..+++..+..  ..++......++..+.++.++.+|+|.
T Consensus       154 ~-l~~~~A----v~~~~~~~~l~~~~~lw~~~~~~~~~g~DiiYa~qD~e~  199 (300)
T PRK12876        154 I-LMNFFA----IIETPLSFSLFCMASLWGISFGMIIAANDIIYAIQDLEF  199 (300)
T ss_pred             H-HHHHHH----HhcCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHhh
Confidence            3 333333    2233222111  122334455666778899999999874

>PLN02809 4-hydroxybenzoate nonaprenyltransferase

Probab=99.94  E-value=6.2e-25  Score=187.50  Aligned_cols=187  Identities=17%  Similarity=0.127  Sum_probs=133.0

Q ss_pred             HHHHHHHHHhhhchhhHHHHHHHH---HHHHHhcCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhccccCC-
Q 028504            4 LNKKCDAFYRLTRPYSCVSIIAAL---LSVSLLPLQSPADFTPKLIIEAFKCMVPAIMMNNYANAINQLADVHIDKVNK-   79 (208)
Q Consensus         4 ~~~~~~~~l~l~Rp~~~~~~~~~~---~~g~~la~~~~~~~~~~~~~~~l~~~l~~~l~~~a~~~iNd~~D~~~D~~~~-   79 (208)
                      +++++++|+|++|.+++.+..+..   ..+..++.......++..   .++..++++++++++|++||++|||+||+|+ 
T Consensus         2 ~~~~~~~y~~L~Rl~kp~~~~l~~~p~~~~~~l~a~~~~~~~~~~---l~l~~~g~~~~~~a~~~~Nd~~Dr~iD~~~~R   78 (289)
T PLN02809          2 LPPSLRPYAKLARLDKPIGTWLLAWPCMWSIALAAPPGSLPDLKM---LALFGCGALLLRGAGCTINDLLDRDIDKKVER   78 (289)
T ss_pred             CchhHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhccCCCCcHHH---HHHHHHHHHHHHHHHHHHHhhHHhccccCCCC
Confidence            357899999999998877665544   334444431111112221   2345678899999999999999999999864 


Q ss_pred             -CCCcccCCccCHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhHhccCCCCCccccccCchhHHHHHHHHHhH
Q 028504           80 -PYLPLACGDFSMGEGLAITIASPLMAVAMGIMLRSPPLVIGFIIWCIVGGAYSIDLPPLLRWKGNPLMAAVTIISMNGL  158 (208)
Q Consensus        80 -~~RPl~sG~is~~~a~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~Ys~~~P~p~~lK~~~~~~~~~v~~~~g~  158 (208)
                       |+||+|||++|++||+.+..++.++++.+.+.+|+.+..++.+.. +..+.|+.       .||++.++++..+...+.
T Consensus        79 T~~RPL~sG~is~~~A~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~-~~~~~Y~~-------~KR~t~~~~~~lg~~~~~  150 (289)
T PLN02809         79 TKLRPIASGALTPFQGVGFLGAQLLLGLGILLQLNNYSRILGASSL-LLVFTYPL-------MKRFTFWPQAFLGLTFNW  150 (289)
T ss_pred             CCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH-HHHHHHhH-------HHhcCcchHHHHHHHHHH
Confidence             699999999999999999999999999998888988888777665 46788865       999999999987777664


Q ss_pred             HHHHHHHHHHHHHHhcCCccccHHHHHHHHHHHHHHHHHHHhhcCCcccC
Q 028504          159 LLLFPFFIHFQKIVLGNPVAFTKPVLFTAAYMVIWNAAIAFVKVTNSEIE  208 (208)
Q Consensus       159 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~D~~~  208 (208)
                      .+..|. ..    ..| ..... +...+.+...+|..+-+.....+|+|+
T Consensus       151 ~~l~g~-~a----v~g-~~~~~-~~~~l~~~~~~W~~~~d~~ya~~D~e~  193 (289)
T PLN02809        151 GALLGW-AA----VKG-SLDPA-VVLPLYASGVCWTLVYDTIYAHQDKED  193 (289)
T ss_pred             HHHHHH-HH----HhC-CCChH-HHHHHHHHHHHHHHHHHHHHHHhchhh
Confidence            444443 22    222 22111 222244455667777777777777763

>COG0109 CyoE Polyprenyltransferase (cytochrome oxidase assembly factor) [Posttranslational modification, protein turnover, chaperones]

Probab=99.93  E-value=1.6e-25  Score=188.88  Aligned_cols=184  Identities=16%  Similarity=0.232  Sum_probs=146.5

Q ss_pred             HHHHHHHHHhhhchhhHHHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhccccCC--CC
Q 028504            4 LNKKCDAFYRLTRPYSCVSIIAALLSVSLLPLQSPADFTPKLIIEAFKCMVPAIMMNNYANAINQLADVHIDKVNK--PY   81 (208)
Q Consensus         4 ~~~~~~~~l~l~Rp~~~~~~~~~~~~g~~la~~~~~~~~~~~~~~~l~~~l~~~l~~~a~~~iNd~~D~~~D~~~~--~~   81 (208)
                      .++++|+|++++||+.....+++...|+++|..  ...++..   .+++.+++.+..+++|++|+++|||+|++|+  ++
T Consensus        14 ~~~~~k~yl~LtKPrvi~L~~it~~~g~~lA~~--~~~~~~l---~~~~~~g~~L~a~~a~a~N~~~DrDID~~M~RT~~   88 (304)
T COG0109          14 SRSTIKDYLQLTKPRVISLLLITAFAGMLLAPR--GSINPLL---LLLTLLGGALGAGGAGAFNMYIDRDIDALMERTRK   88 (304)
T ss_pred             hHHHHHHHHHHhCCeeeehHHHHHHHHHHHccc--ccccHHH---HHHHHHHHHHHHHHHHHHhhhhhhhHHHhhhhccC
Confidence            457899999999999999999999999999974  2234432   3456789999999999999999999999985  69


Q ss_pred             CcccCCccCHHHHHHHHHHHHHHHHHHH-HHhhHHHHHHHHHHHHHHhHhccCCCCCccccccCchhHHHHHHHHHhHHH
Q 028504           82 LPLACGDFSMGEGLAITIASPLMAVAMG-IMLRSPPLVIGFIIWCIVGGAYSIDLPPLLRWKGNPLMAAVTIISMNGLLL  160 (208)
Q Consensus        82 RPl~sG~is~~~a~~~~~~l~~~~~~l~-~~~~~~~~~~~~~~~~~~~~~Ys~~~P~p~~lK~~~~~~~~~v~~~~g~~~  160 (208)
                      ||+|+|+++|+|++.++.++.++|+.+. +..|+.+..+++.+.+++..+||.      .+||++.. |..+|..-|..+
T Consensus        89 RP~~~G~i~p~~al~fgl~L~~~g~~~l~~~vn~laa~l~~~gi~~Yv~vYT~------~lKR~T~~-NiviGg~aGa~P  161 (304)
T COG0109          89 RPLVTGLISPREALAFGLVLGVAGFSLLWFLVNLLAAVLGLFGIFFYVVVYTL------WLKRRTPQ-NIVIGGFAGAMP  161 (304)
T ss_pred             CCCCCCccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhh------hccCCccc-ceeeeecccccc
Confidence            9999999999999999999999999876 788999998998888899999999      69998865 778888888887


Q ss_pred             HHHHHHHHHHHHhcCCccccHHHHHHHHHH----HHHHHHHHHhhcCC
Q 028504          161 LFPFFIHFQKIVLGNPVAFTKPVLFTAAYM----VIWNAAIAFVKVTN  204 (208)
Q Consensus       161 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~k~~~  204 (208)
                      ++..|.+     ..+.+....+..++++|+    =+|..++--.+|++
T Consensus       162 pliGwaA-----vtg~~~~~a~~Lf~IiF~WtPpHfwALAl~~~~DY~  204 (304)
T COG0109         162 PLIGWAA-----VTGSISLGAILLFAIIFLWTPPHFWALALKYKDDYK  204 (304)
T ss_pred             ccceeee-----eeCCCCchHHHHHHHHHHhccHHHHHHHHHHHHHHH
Confidence            7776644     223344455554444443    24555555555553

>PRK07419 1,4-dihydroxy-2-naphthoate octaprenyltransferase; Provisional

Probab=99.93  E-value=4.5e-24  Score=183.18  Aligned_cols=188  Identities=14%  Similarity=0.090  Sum_probs=148.4

Q ss_pred             HHHHHHHHHhhhchhhHHHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhh--ccccCCCC
Q 028504            4 LNKKCDAFYRLTRPYSCVSIIAALLSVSLLPLQSPADFTPKLIIEAFKCMVPAIMMNNYANAINQLADVH--IDKVNKPY   81 (208)
Q Consensus         4 ~~~~~~~~l~l~Rp~~~~~~~~~~~~g~~la~~~~~~~~~~~~~~~l~~~l~~~l~~~a~~~iNd~~D~~--~D~~~~~~   81 (208)
                      -+++++.|++.+||+++..++.+++.|..++.....++++..   .++.+++..+.|+++|.+|||+|++  .|+. +++
T Consensus         8 ~~~~~~~w~~a~RP~tl~asl~pv~lG~a~a~~~~~~f~~~~---~ll~ll~~~l~q~~~N~~NDy~D~~~G~D~~-~~~   83 (304)
T PRK07419          8 SPSRRKLWLAAIKPPMYSVAIMPILVGTAWALGETGVFRLDQ---FITFLLAAILILAWENLSNDVFDADTGIDKN-KFH   83 (304)
T ss_pred             CccHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHcCCCccHHH---HHHHHHHHHHHHHHHHHHHHHHHHhccCCcc-ccc
Confidence            356789999999999999999999999988854323566533   3456689999999999999999997  7874 222


Q ss_pred             CcccCCccCHHHHHHHHHHHHHHHHHHHHH----hhHHHHHHHHHHHHHHhHhccCCCCCccccccCchhHHHHHHHHHh
Q 028504           82 LPLACGDFSMGEGLAITIASPLMAVAMGIM----LRSPPLVIGFIIWCIVGGAYSIDLPPLLRWKGNPLMAAVTIISMNG  157 (208)
Q Consensus        82 RPl~sG~is~~~a~~~~~~l~~~~~~l~~~----~~~~~~~~~~~~~~~~~~~Ys~~~P~p~~lK~~~~~~~~~v~~~~g  157 (208)
                       ..+++..++|+....+..+..+++.++.+    .+++.+.+++++ ++.++.||.  | |+++|+++ +|++.++..+|
T Consensus        84 -~~~~~~~~~~~v~~~~~~~~~~a~~~Gl~L~~~~g~~~l~ig~~g-~~~~~~YT~--g-P~~l~y~g-LGE~~v~l~~G  157 (304)
T PRK07419         84 -SVVNLTGNKSLVFWLANLFLLLGLLGILAIALQSDWTVLGLVLLC-CFLGYLYQG--P-PFRLGYQG-LGEPLCFLAFG  157 (304)
T ss_pred             -CcccccCcHHHHHHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHH-HHHhheccC--C-CcccCCCC-chHHHHHHHHH
Confidence             34456668999999999998888766544    345455555554 469999999  6 99999876 69999999999


Q ss_pred             HHHHHHHHHHHHHHHhcCCccccHHHHHHHHHHHHHHHHHHHhhcCCcccC
Q 028504          158 LLLLFPFFIHFQKIVLGNPVAFTKPVLFTAAYMVIWNAAIAFVKVTNSEIE  208 (208)
Q Consensus       158 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~D~~~  208 (208)
                      +++..|.++. |++      .++...+..+...++.+.++.++||+||+||
T Consensus       158 ~l~v~g~~yv-~t~------~~~~~~~~~sl~~gll~~~IL~~Nn~rD~e~  201 (304)
T PRK07419        158 PLAVAAALYS-QTP------SWSLIPLAASIILGLATSLILFCSHFHQVED  201 (304)
T ss_pred             HHHHHHHHHH-hcC------CCCHHHHHHHHHHHHHHHHHHHHcCCcchhh
Confidence            9998888776 442      2566667778888899999999999999997

>TIGR00751 menA 1,4-dihydroxy-2-naphthoate octaprenyltransferase

Probab=99.93  E-value=5.3e-24  Score=181.37  Aligned_cols=177  Identities=15%  Similarity=0.118  Sum_probs=139.2

Q ss_pred             chhhHHHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhh--ccccC--CCCCcccCCccCH
Q 028504           16 RPYSCVSIIAALLSVSLLPLQSPADFTPKLIIEAFKCMVPAIMMNNYANAINQLADVH--IDKVN--KPYLPLACGDFSM   91 (208)
Q Consensus        16 Rp~~~~~~~~~~~~g~~la~~~~~~~~~~~~~~~l~~~l~~~l~~~a~~~iNd~~D~~--~D~~~--~~~RPl~sG~is~   91 (208)
                      ||++...++.+++.|..++.+. ..+++..   .++.+++++++|+++|.+|||+|++  .|+.+  +|+|++++|.+|+
T Consensus         1 Rp~tl~~s~~pv~lG~ala~~~-~~f~~~~---~ll~~~~~~~~q~~~N~~NDy~D~~~G~D~~~~~~~~r~i~~g~is~   76 (284)
T TIGR00751         1 RPKTLPLAIAPIVAGTALAAWL-HAFVWLV---ALLALATAVLLQILSNYANDYGDGIKGSDTDDRIGPLRGVQKGLITP   76 (284)
T ss_pred             CCchHHHHHHHHHHHHHHHHHc-CCccHHH---HHHHHHHHHHHHHHHHHHHhHHHHhcCCChhhccCCcchhcCCCCCH
Confidence            8999999999999999888543 2566532   3455688899999999999999995  46543  4799999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHh----hH------HHHHHHHHHHHHHhHhccCCCCCccccccCchhHHHHHHHHHhHHHH
Q 028504           92 GEGLAITIASPLMAVAMGIML----RS------PPLVIGFIIWCIVGGAYSIDLPPLLRWKGNPLMAAVTIISMNGLLLL  161 (208)
Q Consensus        92 ~~a~~~~~~l~~~~~~l~~~~----~~------~~~~~~~~~~~~~~~~Ys~~~P~p~~lK~~~~~~~~~v~~~~g~~~~  161 (208)
                      |+++..+..++.+++.++.++    ++      +...++++ +++.++.||.  | |+++|+++ +|++.++..+|+++.
T Consensus        77 ~~v~~~~~~~~~~a~~~Gi~l~~~~~~~~~~~~~~l~lg~~-~~~~~~~Yt~--g-P~~l~y~g-LGE~~v~i~~G~l~v  151 (284)
T TIGR00751        77 REVKTALITSVALGALSGLVLALLAAPNLSDLFWFIALGAL-CIAAAITYTV--G-SKPYGYAG-LGDISVLVFFGPLAV  151 (284)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhcccchhhhHHHHHHHHH-HHHHhHhhcC--C-CCccccCc-hHHHHHHHHHHHHHH
Confidence            999999999988887665543    32      22344444 4468999999  6 89999755 799999999999988


Q ss_pred             HHHHHHHHHHHhcCCccccHHHHHHHHHHHHHHHHHHHhhcCCcccC
Q 028504          162 FPFFIHFQKIVLGNPVAFTKPVLFTAAYMVIWNAAIAFVKVTNSEIE  208 (208)
Q Consensus       162 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~D~~~  208 (208)
                      .|.++. |++      .++...++.....++.+.+++++||+||+||
T Consensus       152 ~g~~yv-q~~------~~~~~~ll~sl~~g~l~~~il~~Nn~~D~~~  191 (284)
T TIGR00751       152 LGTQYL-QAH------RVDWVGILPAVATGLLACAVLNINNLRDIPT  191 (284)
T ss_pred             HHHHHH-hcC------CCCHHHHHHHHHHHHHHHHHHHHcCcccchh
Confidence            888765 442      2455555667778888899999999999996

This membrane-associated enzyme converts 1,4-dihydroxy-2-naphthoic acid (DHNA) to demethylmenaquinone, a step in menaquinone biosynthesis.

>PRK12873 ubiA prenyltransferase; Reviewed

Probab=99.93  E-value=4.8e-24  Score=181.84  Aligned_cols=186  Identities=17%  Similarity=0.149  Sum_probs=136.6

Q ss_pred             HHHHHHHHHhhhchhhHHHHH---HHHHHHHHhcCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhccccCC-
Q 028504            4 LNKKCDAFYRLTRPYSCVSII---AALLSVSLLPLQSPADFTPKLIIEAFKCMVPAIMMNNYANAINQLADVHIDKVNK-   79 (208)
Q Consensus         4 ~~~~~~~~l~l~Rp~~~~~~~---~~~~~g~~la~~~~~~~~~~~~~~~l~~~l~~~l~~~a~~~iNd~~D~~~D~~~~-   79 (208)
                      -.+++++|+|++||+++.++.   ++...|.+++....  .+..   ..++.+++++++++++|++||+.|+|+||+|+ 
T Consensus         3 ~~~~~~~y~~L~R~~Kp~~~~ll~~p~~~g~~la~~~~--~~~~---~~~~~~~g~~l~~~a~~~~Nd~~D~~iD~~~~R   77 (294)
T PRK12873          3 RSIKLSPWFELLRWNKPTGRLILLIPAGWSLWLTPSAP--PSLL---LLLLIILGGLAVSGAGCIANDLWDRRIDRKVER   77 (294)
T ss_pred             chHhHHHHHHHhCccccchHHHHHHHHHHHHHHccCCC--CCHH---HHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCc
Confidence            357899999998877766554   44555666654321  1221   23456689999999999999999999999874 


Q ss_pred             -CCCcccCCccCHHHHHHHHHHHHHHHHHHHHHh----hHHHHHHHHHHHHHHhHhccCCCCCccccccCchhHHHHHHH
Q 028504           80 -PYLPLACGDFSMGEGLAITIASPLMAVAMGIML----RSPPLVIGFIIWCIVGGAYSIDLPPLLRWKGNPLMAAVTIIS  154 (208)
Q Consensus        80 -~~RPl~sG~is~~~a~~~~~~l~~~~~~l~~~~----~~~~~~~~~~~~~~~~~~Ys~~~P~p~~lK~~~~~~~~~v~~  154 (208)
                       ++||+|||++|++||+.++.++.++++.+.+.+    |+.+..++.+..+ +...||.       .||++.+.++..+.
T Consensus        78 T~~RPl~sG~is~~~A~~~~~~~~~~~~~~~~~l~~~~n~l~~~l~~~~~~-~~~~Y~~-------~KR~t~~~~~vlg~  149 (294)
T PRK12873         78 TKNRPLARGKISLKTAYSLLIVLLLLSLFVVLSLPQPSRNLCLSLAFLALP-PILIYPS-------AKRWFAYPQAILAL  149 (294)
T ss_pred             CCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHH-HHHHHHH-------HHhccccchHHHHH
Confidence             699999999999999999999999998887654    6677777766664 7788975       99999999988887


Q ss_pred             HHhHHHHHHHHHHHHHHHhcCCccccHHHHHHHHHHHHHHHHHHHhhcCCcccC
Q 028504          155 MNGLLLLFPFFIHFQKIVLGNPVAFTKPVLFTAAYMVIWNAAIAFVKVTNSEIE  208 (208)
Q Consensus       155 ~~g~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~D~~~  208 (208)
                      ..+.-+..|+ .+     ..+.+....+.+++...+.+|..+-++.....|.|+
T Consensus       150 ~~a~~~l~gw-~A-----v~g~~~~~~~~l~l~~~~~~W~~~~d~iyA~qD~ed  197 (294)
T PRK12873        150 CWGFAVLIPW-AA-----AEGSLNGGWPLLFCWLATLLWTFGFDTVYAMADRRD  197 (294)
T ss_pred             HHHhHHHHHH-HH-----HhCCCchhHHHHHHHHHHHHHHHHHHHHHHHHhHhh
Confidence            7664444443 22     223333333444445677788888888888888774

>PRK13592 ubiA prenyltransferase; Provisional

Probab=99.92  E-value=2.6e-24  Score=182.05  Aligned_cols=146  Identities=10%  Similarity=0.079  Sum_probs=103.9

Q ss_pred             HHHHHHHHHHHHHHHHHhhhhhhhhccccCCCCCcccCCccCHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHh
Q 028504           49 AFKCMVPAIMMNNYANAINQLADVHIDKVNKPYLPLACGDFSMGEGLAITIASPLMAVAMGIMLRSPPLVIGFIIWCIVG  128 (208)
Q Consensus        49 ~l~~~l~~~l~~~a~~~iNd~~D~~~D~~~~~~RPl~sG~is~~~a~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~  128 (208)
                      .+++++..++..+++|++|||+|+|+||+|+|+||+|||++|+++|+.++..+.++++.++...     ....... +..
T Consensus        48 ~~l~~~~vf~~~~~gniiNDy~D~EIDrIN~P~RPLPsG~VS~~~A~~~si~L~~~~l~L~~l~-----~i~i~~~-~i~  121 (299)
T PRK13592         48 EFVGVFTVFGFWMILRIADDFKDYETDRRLFPHRALPSGRVKKKDLAIALSFIVAVSVLLNVLF-----MNNVGWF-LFL  121 (299)
T ss_pred             HHHHHHHHHHHHHHhHHHHHHhhHHHhhhcCCCCCCCcCCCCHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHH-HHH
Confidence            3455667788899999999999999999999999999999999999999999977777766554     1111112 234


Q ss_pred             Hhc-----cCCCCCccccccCchhHHHHHHHHHhHHHHHH--HHHH-HHHHHhcCCccccHHHHHHHHHHHHHHHHHHHh
Q 028504          129 GAY-----SIDLPPLLRWKGNPLMAAVTIISMNGLLLLFP--FFIH-FQKIVLGNPVAFTKPVLFTAAYMVIWNAAIAFV  200 (208)
Q Consensus       129 ~~Y-----s~~~P~p~~lK~~~~~~~~~v~~~~g~~~~~g--~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  200 (208)
                      +.|     +.      ++||.++.||+.++...|..+..|  ++.. ++....|.+. .....+++.....+.+++.|++
T Consensus       122 ~lY~~lm~a~------~~K~~~l~gNl~Va~ltg~~f~~g~~~~~~~fg~~~~g~~~-~~~~~~~l~l~afl~~l~rEI~  194 (299)
T PRK13592        122 YIYGTLMSFW------FFKRDKIQNSLPLALVTHNPVMMILNLYTISFVCYKYNLPL-LSLPTVLLAFTMYFPSLIWEVC  194 (299)
T ss_pred             HHHHHHHHHH------HHcccCCCcchhhhhhccchhhhchhhhhhhhhhhhcccch-hhHHHHHHHHHHHHHHHHHHHH
Confidence            445     76      799999999999999999776444  2211 1222333332 1221123344556668899999


Q ss_pred             hcCCccc
Q 028504          201 KVTNSEI  207 (208)
Q Consensus       201 k~~~D~~  207 (208)
                      ||+||++
T Consensus       195 KdieD~g  201 (299)
T PRK13592        195 RKIRAPK  201 (299)
T ss_pred             HhhcCCc
Confidence            9999943

>PLN02922 prenyltransferase

Probab=99.92  E-value=4.5e-23  Score=177.88  Aligned_cols=191  Identities=15%  Similarity=0.117  Sum_probs=144.0

Q ss_pred             HHHHHHHHhhhchhhHHHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhh--ccccCCC--
Q 028504            5 NKKCDAFYRLTRPYSCVSIIAALLSVSLLPLQSPADFTPKLIIEAFKCMVPAIMMNNYANAINQLADVH--IDKVNKP--   80 (208)
Q Consensus         5 ~~~~~~~l~l~Rp~~~~~~~~~~~~g~~la~~~~~~~~~~~~~~~l~~~l~~~l~~~a~~~iNd~~D~~--~D~~~~~--   80 (208)
                      +++++.|++.+||++...++.+++.|..+|.....++++..   .++.+++.++.|++.|.+|||+|.+  .|+.++.  
T Consensus        12 ~~~~~~w~~a~Rp~tl~~s~~pv~lG~a~A~~~~g~f~~~~---~ll~ll~~~l~q~~~N~~NDy~D~~~G~D~~~~~~~   88 (315)
T PLN02922         12 LSRATLWWRAIKLPMYSVALVPLTVGAAAAYLQTGLFDARR---YGTLLLSSVLVITWLNLSNDAYDADTGVDKNKKESV   88 (315)
T ss_pred             ccHHHHHHHHhCcchHHHHHHHHHHHHHHHHHcCCCccHHH---HHHHHHHHHHHHHHHHHHhhhhHhccCcCcccCCCC
Confidence            45789999999999999999999999888864323566543   3456789999999999999999986  6875432  


Q ss_pred             CCcccCCccCHHHHHHHHHHHHHHHHHHHHHh-----hHHHHHHHHHHHHHHhHhccCCCCCccccccCchhHHHHHHHH
Q 028504           81 YLPLACGDFSMGEGLAITIASPLMAVAMGIML-----RSPPLVIGFIIWCIVGGAYSIDLPPLLRWKGNPLMAAVTIISM  155 (208)
Q Consensus        81 ~RPl~sG~is~~~a~~~~~~l~~~~~~l~~~~-----~~~~~~~~~~~~~~~~~~Ys~~~P~p~~lK~~~~~~~~~v~~~  155 (208)
                      .|+  .|  |+++.+..+..+.++++...+.+     +++.+.++++ ++..++.||.  | |+++|+++ +|++.++..
T Consensus        89 ~~~--~~--s~~~v~~~~~~~~~la~~g~~ll~~~~~~~~~l~iG~~-g~~~~~~Yt~--g-P~pl~y~g-LGE~~v~i~  159 (315)
T PLN02922         89 VNL--VG--SRRGVLAAAIGCLALGAAGLVWASLVAGNIRVILLLAA-AILCGYVYQC--P-PFRLSYKG-LGEPLCFAA  159 (315)
T ss_pred             CCc--cc--CHHHHHHHHHHHHHHHHHHHHHHHHHccChHHHHHHHH-HHHHHHHHhc--C-CcccccCc-chHHHHHHH
Confidence            344  33  99999999888888877433222     3444555554 4479999999  6 89999765 799999999


Q ss_pred             HhHHHHHHHHHHHHHHHhcC-C---ccccHHHHHHHHHHHHHHHHHHHhhcCCcccC
Q 028504          156 NGLLLLFPFFIHFQKIVLGN-P---VAFTKPVLFTAAYMVIWNAAIAFVKVTNSEIE  208 (208)
Q Consensus       156 ~g~~~~~g~~~~~~~~~~~~-~---~~~~~~~~~~~~~~~~~~~~~~~~k~~~D~~~  208 (208)
                      +|+++..|.|+. |++..+. .   ..++...++.+...++.+.++.++||+||+||
T Consensus       160 fG~l~v~g~y~~-~~~~~~~~~~~~~~~~~~~~l~slp~gll~~~iL~~Nn~rD~e~  215 (315)
T PLN02922        160 FGPLATTAFYLA-LASGAGGSEMAILPLTPTVLSASVLVGLTTTLILFCSHFHQIDG  215 (315)
T ss_pred             HHHHHHHHHHHH-hcccccccccccccccHHHHHHHHHHHHHHHHHHHHccCcchhh
Confidence            999888777665 4432211 1   12455667788899999999999999999997

>PRK12871 ubiA prenyltransferase; Reviewed

Probab=99.91  E-value=3.9e-23  Score=177.05  Aligned_cols=180  Identities=17%  Similarity=0.181  Sum_probs=118.9

Q ss_pred             HHHHHHHHhhhchhhHHHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhccccC------
Q 028504            5 NKKCDAFYRLTRPYSCVSIIAALLSVSLLPLQSPADFTPKLIIEAFKCMVPAIMMNNYANAINQLADVHIDKVN------   78 (208)
Q Consensus         5 ~~~~~~~l~l~Rp~~~~~~~~~~~~g~~la~~~~~~~~~~~~~~~l~~~l~~~l~~~a~~~iNd~~D~~~D~~~------   78 (208)
                      ++++++|++++||++......++..|.++|.......++...   ++.++++.++.+++|++|||+|+|+|+.|      
T Consensus         2 ~~~~~~~~~l~Rp~~l~~~~~~~~~g~~lA~~~~g~~~~~~~---~l~~l~~~l~~~ag~~iND~~D~~~D~~~v~rtm~   78 (297)
T PRK12871          2 KETLKAYIDLTRAHFLPAWPLLFCSGLVLAFANYGGFSWELT---IKAALIGLFGFEAGFVLNDYVDRKRDRLDVENTLT   78 (297)
T ss_pred             cchHHHHHHHHhHHHHHHHHHHHHHHHHHHHHccCCCCHHHH---HHHHHHHHHHHHHHHHHhhHHHHhcCcchHhhhhh
Confidence            357899999999998888877777787776311122343221   22234555556778999999999999864      


Q ss_pred             ---C--CCCcccCCccCHHHHHHHHHHHHHHHHHHHHHhhHH----HHHHHHHHHHHHhHhccCCCCCcccccc---Cc-
Q 028504           79 ---K--PYLPLACGDFSMGEGLAITIASPLMAVAMGIMLRSP----PLVIGFIIWCIVGGAYSIDLPPLLRWKG---NP-  145 (208)
Q Consensus        79 ---~--~~RPl~sG~is~~~a~~~~~~l~~~~~~l~~~~~~~----~~~~~~~~~~~~~~~Ys~~~P~p~~lK~---~~-  145 (208)
                         |  ++||+++|++|++|++.+++++.++|+.++..++..    .+.++ +.....++.|+.       .||   .| 
T Consensus        79 r~~~P~~~Rpl~sG~is~~~a~~~~i~l~~i~~~l~~~l~~~~~~~~~~l~-~~~~~~~~~Y~~-------~kr~~~~p~  150 (297)
T PRK12871         79 RYWRPFKERPIPSGKLSSKNAFALFILLAAVTSALILTLPYPNSLYVFVIM-LYSYGIEAFYQV-------KKRNQKYPV  150 (297)
T ss_pred             ccccCCCCCccCCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHhc-------ccccccccH
Confidence               2  589999999999999999999999998887765442    22222 222245566654       233   24 


Q ss_pred             --hhHHHHHHHHHhHHHHHHHHHHHHHHHhcCCccccHHHHHHHHHHHHHHHHHHHhhcCCcccC
Q 028504          146 --LMAAVTIISMNGLLLLFPFFIHFQKIVLGNPVAFTKPVLFTAAYMVIWNAAIAFVKVTNSEIE  208 (208)
Q Consensus       146 --~~~~~~v~~~~g~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~D~~~  208 (208)
                        ..|++.    .+. +++..+..     .| .  .+...+....+..+++.+.+.+||.+|.|+
T Consensus       151 ~~l~G~~~----~~~-~~~~g~~~-----~g-~--~~~~~~ll~~~~~~w~~~~~~~~a~~D~e~  202 (297)
T PRK12871        151 AQLLGRTD----FTL-FPAAGYLC-----YG-Q--PDMTALLYMVFFYPWTMAHLGLNDFIDLEN  202 (297)
T ss_pred             HHHHHHHH----HHH-HHHHHHHH-----hC-C--CcHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Confidence              233332    222 22333221     12 2  344455566778889999999999999985

>COG1575 MenA 1,4-dihydroxy-2-naphthoate octaprenyltransferase [Coenzyme metabolism]

Probab=99.91  E-value=6.2e-23  Score=173.62  Aligned_cols=193  Identities=16%  Similarity=0.138  Sum_probs=150.4

Q ss_pred             ChhHHHHHHHHHhhhchhhHHHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhh--ccc--
Q 028504            1 MQVLNKKCDAFYRLTRPYSCVSIIAALLSVSLLPLQSPADFTPKLIIEAFKCMVPAIMMNNYANAINQLADVH--IDK--   76 (208)
Q Consensus         1 ~~~~~~~~~~~l~l~Rp~~~~~~~~~~~~g~~la~~~~~~~~~~~~~~~l~~~l~~~l~~~a~~~iNd~~D~~--~D~--   76 (208)
                      |+..+++.+.|++++||+++..++.++++|..+|.+....+++   +..++.++++.+++.+.|..|||.|.+  .|.  
T Consensus         1 ~~~~~~~~~~wl~~~rP~Tl~aai~Pv~~G~a~A~~~~~~f~~---~~~ll~Li~~~~iq~~vN~~NdY~D~~KG~D~~g   77 (303)
T COG1575           1 MSQKTSKTQLWLELARPKTLPAAIAPVIVGTALAFWYGKSFNL---LVALLALIAAILLQILVNLANDYFDYKKGTDTHG   77 (303)
T ss_pred             CCcccHHHHHHHHhcCccchHHHHHHHHHHHHHHHHHccchHH---HHHHHHHHHHHHHHHHHHHHHhhhhhhcCCCCCC
Confidence            3445677899999999999999999999999988754334443   234556789999999999999999986  574  


Q ss_pred             --cCCCCCcccCCccCHHHHHHHHHHHHHHHHHHHHH----hhHHHHHHHHHHHHHHhHhccCCCCCccccccCchhHHH
Q 028504           77 --VNKPYLPLACGDFSMGEGLAITIASPLMAVAMGIM----LRSPPLVIGFIIWCIVGGAYSIDLPPLLRWKGNPLMAAV  150 (208)
Q Consensus        77 --~~~~~RPl~sG~is~~~a~~~~~~l~~~~~~l~~~----~~~~~~~~~~~~~~~~~~~Ys~~~P~p~~lK~~~~~~~~  150 (208)
                        ..+.++-+.+.+++++.++.+...+...+..++..    .+++.+.++++ +++.++.||+|   |+++++. .+|++
T Consensus        78 ~~~~~~~g~I~~~~~k~~~~l~l~l~~~~g~~llg~~~~~~s~~~~l~lG~l-~~~~g~~YTgG---p~PlgY~-gLGEi  152 (303)
T COG1575          78 PDRLKQSGLIVRQSMKPALILSLALFLLAGLALLGVILAALSDWLVLLLGLL-CIAAGILYTGG---PFPLGYM-GLGEI  152 (303)
T ss_pred             CccccccceeecccCCHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHH-HHHheeeeccC---CcCcccC-CHHHH
Confidence              34567888889999999998888888877766543    34443455544 44799999996   6666654 48999


Q ss_pred             HHHHHHhHHHHHHHHHHHHHHHhcCCccccHHHHHHHHHHHHHHHHHHHhhcCCcccC
Q 028504          151 TIISMNGLLLLFPFFIHFQKIVLGNPVAFTKPVLFTAAYMVIWNAAIAFVKVTNSEIE  208 (208)
Q Consensus       151 ~v~~~~g~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~D~~~  208 (208)
                      .++.++|++...|.++. |+..      +++...+.+...++-+.++..+||+||+||
T Consensus       153 ~~~vffG~l~v~g~~yi-qt~~------~~~~~ll~slp~gil~~~Il~aNNirDie~  203 (303)
T COG1575         153 FVGVFFGPLIVLGAYYI-QTGR------LSWAILLPSLPVGILIANILLANNLRDIEE  203 (303)
T ss_pred             HHHHHHHHHHHHHHHHH-hccc------chHHHHHHHHHHHHHHHHHHHhcccccchh
Confidence            99999999888887765 4422      556677788888899999999999999997

>PLN02776 prenyltransferase

Probab=99.91  E-value=1.7e-22  Score=174.98  Aligned_cols=162  Identities=15%  Similarity=0.077  Sum_probs=124.7

Q ss_pred             hhchhhHHHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhccccCC--CCCcccCCccCH
Q 028504           14 LTRPYSCVSIIAALLSVSLLPLQSPADFTPKLIIEAFKCMVPAIMMNNYANAINQLADVHIDKVNK--PYLPLACGDFSM   91 (208)
Q Consensus        14 l~Rp~~~~~~~~~~~~g~~la~~~~~~~~~~~~~~~l~~~l~~~l~~~a~~~iNd~~D~~~D~~~~--~~RPl~sG~is~   91 (208)
                      ++||+....++++...|+++|.++..  ++.   .+++..+++.++++++|++||++|+|+|++|+  ++||+|+|++|+
T Consensus         1 L~Kpri~~lv~~ta~~G~~lA~~~~~--~~~---~l~~~~lg~~l~~aaa~~~N~i~DrdiD~~m~RT~~RPLpsGris~   75 (341)
T PLN02776          1 LSKARLSALVVATSGAGFVLGSGEAI--DLP---GLGWTCAGTMLCAASANTLNQVFEVKNDSKMKRTMRRPLPSGRISV   75 (341)
T ss_pred             CCcchhHHHHHHHHHHHHHHhcCCCC--CHH---HHHHHHHHHHHHHHHHHHHHhHHhhhhcccCCCCCCCCCCCCCCCH
Confidence            57999999999999999999854322  322   12345679999999999999999999999875  699999999999


Q ss_pred             HHHHHHHHHHHHHHHHH-HHHhhHHHHHHHHHHHHHHhHhccCCCCCccccccCchhHHHHHHHHHhHHHHHHHHHHHHH
Q 028504           92 GEGLAITIASPLMAVAM-GIMLRSPPLVIGFIIWCIVGGAYSIDLPPLLRWKGNPLMAAVTIISMNGLLLLFPFFIHFQK  170 (208)
Q Consensus        92 ~~a~~~~~~l~~~~~~l-~~~~~~~~~~~~~~~~~~~~~~Ys~~~P~p~~lK~~~~~~~~~v~~~~g~~~~~g~~~~~~~  170 (208)
                      ++|+.+++++.++|+.+ ++.+|+.+..++.+..+.+...||.       +||++.+ |..+|...|...+++.|.+.  
T Consensus        76 ~~A~~~~~~l~~~g~~~l~~~~n~l~~~l~~~~~~ly~~vYt~-------lKR~t~~-~~~lG~~~Ga~ppL~Gw~Av--  145 (341)
T PLN02776         76 PHAVAWAVVVGAAGVALLAYKTNMLTAGLGAGNILLYAFVYTP-------LKQIHPA-NTWVGAVVGAIPPLMGWAAA--  145 (341)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHh-------HccCCch-hHHHHHHHHHHHHHHHHHHH--
Confidence            99999999999999854 5678988888877766556778975       9999977 57889898977777776552  


Q ss_pred             HHhcCCccccHHHHHHHHHHHHHHH
Q 028504          171 IVLGNPVAFTKPVLFTAAYMVIWNA  195 (208)
Q Consensus       171 ~~~~~~~~~~~~~~~~~~~~~~~~~  195 (208)
                         .+.+  +...+++...+.+|..
T Consensus       146 ---tg~~--~~~~~~Lf~~~~~Wq~  165 (341)
T PLN02776        146 ---SGQL--DAGAMVLAAALYFWQM  165 (341)
T ss_pred             ---cCCC--CHHHHHHHHHHHHHHH
Confidence               2233  3333344444555544

>TIGR02235 menA_cyano-plnt 1,4-dihydroxy-2-naphthoate phytyltransferase

Probab=99.90  E-value=2.9e-22  Score=170.79  Aligned_cols=181  Identities=13%  Similarity=0.072  Sum_probs=138.8

Q ss_pred             HHhhhchhhHHHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhh--ccccCCCCCcccCCc
Q 028504           11 FYRLTRPYSCVSIIAALLSVSLLPLQSPADFTPKLIIEAFKCMVPAIMMNNYANAINQLADVH--IDKVNKPYLPLACGD   88 (208)
Q Consensus        11 ~l~l~Rp~~~~~~~~~~~~g~~la~~~~~~~~~~~~~~~l~~~l~~~l~~~a~~~iNd~~D~~--~D~~~~~~RPl~sG~   88 (208)
                      |++.+||++...++.++..|..+|....+++++..   .++.++++.+.|+++|.+|||+|.+  .|+.+. + ...++.
T Consensus         2 w~~a~Rp~tl~~s~~pv~lG~alA~~~~~~f~~~~---~ll~li~~l~~q~~~N~~Ndy~D~~~G~D~~~~-~-~~~~~~   76 (285)
T TIGR02235         2 WLAAIKPPLYSVAVMPILVGTAVAWGQGGVFHLDR---FALFLIAAILILAWINLTNDVFDSDTGIDRFKL-H-SIVNLT   76 (285)
T ss_pred             hHHHhhhhHHHHHHHHHHHHHHHHHHcCCCcCHHH---HHHHHHHHHHHHHHHHHHHhHHHHhcCCCcccc-C-Cccccc
Confidence            67899999999999999999988854334566543   2345679999999999999999987  487432 1 122333


Q ss_pred             cCHHHHHHHHHHHHHHHHHHHHH----hhHHHHHHHHHHHHHHhHhccCCCCCccccccCchhHHHHHHHHHhHHHHHHH
Q 028504           89 FSMGEGLAITIASPLMAVAMGIM----LRSPPLVIGFIIWCIVGGAYSIDLPPLLRWKGNPLMAAVTIISMNGLLLLFPF  164 (208)
Q Consensus        89 is~~~a~~~~~~l~~~~~~l~~~----~~~~~~~~~~~~~~~~~~~Ys~~~P~p~~lK~~~~~~~~~v~~~~g~~~~~g~  164 (208)
                      .|+++....+..+..++...+.+    .+++.+.++.+ ++..++.||.  | |+++|+++ +|++.++..+|+++..|.
T Consensus        77 ~~~~~v~~~~~~~~~ia~~~g~~L~~~~~~~~l~lg~~-g~~~~~~Yt~--g-P~~l~y~g-LGE~~v~l~~G~l~v~g~  151 (285)
T TIGR02235        77 GSRSLVFWLANFFLLIGLVGIAALSWRWQITVLALVGL-CCFLGYLYQG--P-PFRLGYQG-LGEPICWLCFGPLAIAAA  151 (285)
T ss_pred             CcHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHH-HHHHHHhhcC--C-CcccCCCC-ccHHHHHHHHHHHHHHHH
Confidence            56899888888888877765433    34444455554 4469999999  6 89999766 699999999999988888


Q ss_pred             HHHHHHHHhcCCccccHHHHHHHHHHHHHHHHHHHhhcCCcccC
Q 028504          165 FIHFQKIVLGNPVAFTKPVLFTAAYMVIWNAAIAFVKVTNSEIE  208 (208)
Q Consensus       165 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~D~~~  208 (208)
                      ++. |++      .+++..++.+...++.+.++.++||+||+||
T Consensus       152 ~yv-qt~------~~~~~~~l~sl~~gl~~~~iL~~Nn~rD~e~  188 (285)
T TIGR02235       152 LYA-QSQ------SFSLIPWKASILVGLATTLILFCSHFHQVED  188 (285)
T ss_pred             HHH-hCC------cCcHHHHHHHHHHHHHHHHHHHhcCCccchh
Confidence            766 442      3566677788889999999999999999997

This family of phytyltransferases, found in plants and cyanobacteria, are involved in the biosythesis of phylloquinone (Vitamin K1). Phylloquinone is a critical component of photosystem I. The closely related MenA enzyme from bacteria transfers a prenyl group (which only differs in the saturation of the isoprenyl groups) in the biosynthesis of menaquinone. Activity towards both substrates in certain organisms should be considered a possibility.

>PRK13105 ubiA prenyltransferase; Reviewed

Probab=99.89  E-value=3.3e-21  Score=163.78  Aligned_cols=181  Identities=18%  Similarity=0.124  Sum_probs=121.8

Q ss_pred             HHHHHhhhchhhHHHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHHH-HHHHHHHHHHhhhhhhhhccccCCCCCcccC
Q 028504            8 CDAFYRLTRPYSCVSIIAALLSVSLLPLQSPADFTPKLIIEAFKCMVP-AIMMNNYANAINQLADVHIDKVNKPYLPLAC   86 (208)
Q Consensus         8 ~~~~l~l~Rp~~~~~~~~~~~~g~~la~~~~~~~~~~~~~~~l~~~l~-~~l~~~a~~~iNd~~D~~~D~~~~~~RPl~s   86 (208)
                      +|.++++.||++|+.+.++...|+++|.+ .+  ++..    ++..+. ....+.+-|.+|||+|+|.|+.|++++.. .
T Consensus         1 ~~~~~~~~rP~~wi~~a~pf~~g~~la~~-~~--~~~~----l~~~l~~~~~~n~am~~~Ndy~D~~~d~dn~r~~g~-~   72 (282)
T PRK13105          1 IRQLLLSSRPISWINTAYPFAAAYLLAGG-EI--DWLF----VVGTVFFLIPYNLAMYGINDVFDYESDLRNPRKGGV-E   72 (282)
T ss_pred             ChhHHHhcccHHHhccHHHHHHHHHHHCC-CC--ChHH----HHHHHHHHHHHHHHHHhhhhhhhhhcCCCCcccCCC-C
Confidence            36789999999999999999889998832 22  2211    111122 22223333466999999999998654332 5


Q ss_pred             CccCHHHHHHHHHHHHHHHH-----HHHHHhhHHHHHHHHHHHHHHhHhccCCCCCccccccCchhHHHHHHHHHhHHHH
Q 028504           87 GDFSMGEGLAITIASPLMAV-----AMGIMLRSPPLVIGFIIWCIVGGAYSIDLPPLLRWKGNPLMAAVTIISMNGLLLL  161 (208)
Q Consensus        87 G~is~~~a~~~~~~l~~~~~-----~l~~~~~~~~~~~~~~~~~~~~~~Ys~~~P~p~~lK~~~~~~~~~v~~~~g~~~~  161 (208)
                      |.+|++|.......+..++.     .+....|++.+.++.+.. +.++.||.  | |.++|++++.|+++.+..+.....
T Consensus        73 g~i~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~l~~~ai-~~~~~YS~--~-p~rlk~~gl~d~~t~~~~f~~~~v  148 (282)
T PRK13105         73 GAVLDRAMHRTTLWASVVTTVPFLVVLLAVGSWASGLVLAVSV-FAVVAYSA--P-GLRFKERPFLDSLTSSTHFVSPAL  148 (282)
T ss_pred             CccCHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHH-HHHHHhcC--C-CccccccchHHHHHHHHHHHHHHH
Confidence            88999998444444433332     233333555665665544 68999999  6 899999999999766655543344


Q ss_pred             HHHHHHHHHHHhcCCccccHHHHHHHHHHHHHHHHHHHhhcCCcccC
Q 028504          162 FPFFIHFQKIVLGNPVAFTKPVLFTAAYMVIWNAAIAFVKVTNSEIE  208 (208)
Q Consensus       162 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~D~~~  208 (208)
                      .|.++.      ++.  .+...++.++.+++++.+.++.||+||+|.
T Consensus       149 ~G~~~~------~~~--~~~~~~l~~~~~~~~~~a~~ii~~irDie~  187 (282)
T PRK13105        149 YGLVLA------GAP--FTAALWAVLAAFFLWGMASHAFGAVQDVVA  187 (282)
T ss_pred             HHHHHh------hcc--ccHHHHHHHHHHHHHHHHHHHHHhCcchHh
Confidence            454332      222  445566678888999999999999999984

>PF01040 UbiA: UbiA prenyltransferase family; InterPro: IPR000537 The UbiA family of prenyltransferases includes bacterial 4-hydroxybenzoate octaprenyltransferase (gene ubiA); yeast mitochondrial para-hydroxybenzoate--polyprenyltransferase (gene COQ2); and protohaem IX farnesyltransferase (haem O synthase) from yeast and mammals(gene COX10), and from bacteria (genes cyoE or ctaB) [, ]

Probab=99.88  E-value=3.9e-22  Score=166.19  Aligned_cols=169  Identities=21%  Similarity=0.304  Sum_probs=129.8

Q ss_pred             HHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhcccc--CCCCCcccCCccCHHHHHHHHH
Q 028504           22 SIIAALLSVSLLPLQSPADFTPKLIIEAFKCMVPAIMMNNYANAINQLADVHIDKV--NKPYLPLACGDFSMGEGLAITI   99 (208)
Q Consensus        22 ~~~~~~~~g~~la~~~~~~~~~~~~~~~l~~~l~~~l~~~a~~~iNd~~D~~~D~~--~~~~RPl~sG~is~~~a~~~~~   99 (208)
                      ....+++.|...+...  ..++...   ....++.++.+.++|.+||+.|+|+|+.  |||+||+++|++|++++...+.
T Consensus         3 ~~~~~~l~~~~~~~~~--~~~~~~~---~~~~l~~~~~~~~~~~~Nd~~D~~~D~~~~~~~~rPl~~g~i~~~~~~~~~~   77 (257)
T PF01040_consen    3 LSFLPVLAGLALASGG--PFNWPIF---LLGLLAVFLLQLAVYLLNDYFDYEEDRIHPNKPNRPLPSGRISPRQALIFAL   77 (257)
T ss_pred             HHHHHHHHHHHHHHcC--CCCHHHH---HHHHHHHHHHHHHHHHhhChhhhhcCcccccccCcchhHHHHhHHHHHHHHH
Confidence            3445555564444332  2333222   2344566799999999999999999999  8899999999999999999999


Q ss_pred             HHHHHHHHHHHHhhHHHHHHHHHHHHHHhHhccCCCCCccccccCchhHHHHHHHHHhHHHHHHHHHHHHHHHhcCCccc
Q 028504          100 ASPLMAVAMGIMLRSPPLVIGFIIWCIVGGAYSIDLPPLLRWKGNPLMAAVTIISMNGLLLLFPFFIHFQKIVLGNPVAF  179 (208)
Q Consensus       100 ~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~Ys~~~P~p~~lK~~~~~~~~~v~~~~g~~~~~g~~~~~~~~~~~~~~~~  179 (208)
                      .+..+++.+++..+++...+..+.. +.++.||.    |+++||++.++++.++..++..+..|.+..      ++.  .
T Consensus        78 ~~~~l~l~l~~~~~~~~~~~~~~~~-~~~~~Ys~----~~~lk~~~~~~~~~~~~~~~~~~~~~~~~~------~~~--~  144 (257)
T PF01040_consen   78 ILLLLGLLLALLLGPWFLLILLLGF-LLGLLYSP----PLRLKRRPLWGELVVALVFGLLILLGAYAA------GGD--P  144 (257)
T ss_pred             HHHHHHHHHHHhcCchhHHHHHHHH-HHHHHHhh----hhhhcceeccchhhHHHhhhHhhhhhhhhc------CCc--c
Confidence            9999999999888888887776666 46799994    789999999999999998887666665432      221  2


Q ss_pred             cHHHHHHHHHHHHHHHHHHHhhcCCcccC
Q 028504          180 TKPVLFTAAYMVIWNAAIAFVKVTNSEIE  208 (208)
Q Consensus       180 ~~~~~~~~~~~~~~~~~~~~~k~~~D~~~  208 (208)
                      +.+.+....+..++..++...||++|+||
T Consensus       145 ~~~~~~~~~~~~~~~~~~~~~~~~~D~~~  173 (257)
T PF01040_consen  145 PPPPFLLAIFFFLLIFAIMFFNDIRDIEG  173 (257)
T ss_pred             cHHHHHHHHHHHHHHHHHHHHHHhhhHHH
Confidence            45555666666788888999999999986

These are integral membrane proteins, which probably contain seven transmembrane segments. The signature is also found in cytochrome C oxidase assembly factor. The complexity of cytochrome C oxidase requires assistance in building the complex, and this is carried out by the cytochrome C oxidase assembly factor.; GO: 0004659 prenyltransferase activity, 0016021 integral to membrane

>PRK12872 ubiA prenyltransferase; Reviewed

Probab=99.87  E-value=5.3e-21  Score=162.91  Aligned_cols=185  Identities=17%  Similarity=0.110  Sum_probs=126.9

Q ss_pred             HHHHHHHhhhchhhHHHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhccccCCCCCccc
Q 028504            6 KKCDAFYRLTRPYSCVSIIAALLSVSLLPLQSPADFTPKLIIEAFKCMVPAIMMNNYANAINQLADVHIDKVNKPYLPLA   85 (208)
Q Consensus         6 ~~~~~~l~l~Rp~~~~~~~~~~~~g~~la~~~~~~~~~~~~~~~l~~~l~~~l~~~a~~~iNd~~D~~~D~~~~~~RPl~   85 (208)
                      +.+++++++.|+.+......++..+......  .+..+ .    ....++.++.++++|++|||+|+|+|++|+|+||.+
T Consensus         2 ~~~~~~~~~~~~~~~~~a~~~~~l~~~~~~~--~~~~~-~----~~~~~~~~~~~~~~~~~N~~~D~~~D~~n~~~R~~~   74 (285)
T PRK12872          2 KLLFAFLKLFRYGNLLIAALGQSLVYMASLL--LGLPI-S----WLLLLITFLIAAAVYIINYLTDLEEDIINKPERVVF   74 (285)
T ss_pred             hHHHHHHHHHHHccHHHHHHHHHHHHHHHHH--HcChh-H----HHHHHHHHHHHHHHHHhhhhcCCchhhcCCCchHHH
Confidence            4568899999999998887776654322100  11111 1    123467889999999999999999999999999988


Q ss_pred             CCccCHHHHHHHHHHHHHHHHHH-HHHhhHHHHHHHHHHHHHHhHhccCCCCCcc-ccccCchhHHHHHHHHHhHHHHHH
Q 028504           86 CGDFSMGEGLAITIASPLMAVAM-GIMLRSPPLVIGFIIWCIVGGAYSIDLPPLL-RWKGNPLMAAVTIISMNGLLLLFP  163 (208)
Q Consensus        86 sG~is~~~a~~~~~~l~~~~~~l-~~~~~~~~~~~~~~~~~~~~~~Ys~~~P~p~-~lK~~~~~~~~~v~~~~g~~~~~g  163 (208)
                      |++...+.+..+..+.+.++..+ +...|++...++.+.. +.++.||.  | |. ++||.|.+||+.++..+|..+..+
T Consensus        75 s~~~~~~~~~~l~~i~~~~~~~l~~~~~~~~~~~~~~~~~-~~~~~Ys~--~-~~~~lk~~p~~~~~~vg~~~g~~~~~~  150 (285)
T PRK12872         75 SETKAYGLFLLLNVLGLYLGAYLLAVIGGPKFALIFIIPL-ILGILYSV--F-FKRRLKRIPLFKNLVVSLLWALSPLIL  150 (285)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHH-HHHHHHhC--h-hHHHHhhhhhHhhHHHHHHHHHHHHHH
Confidence            54444444433333333333333 2234777777776665 57999999  4 33 699999999999999999876665


Q ss_pred             HHHHHHHHHhcCCccccHHHHHHHHHHHHHHHHHHHhhcCCcccC
Q 028504          164 FFIHFQKIVLGNPVAFTKPVLFTAAYMVIWNAAIAFVKVTNSEIE  208 (208)
Q Consensus       164 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~D~~~  208 (208)
                      .++. ++    .  .++...+....++.+...+.++.||+||+|+
T Consensus       151 ~~~~-~~----~--~~~~~~~~~~~~~fl~~~~~~~~~d~~D~e~  188 (285)
T PRK12872        151 GVYY-YQ----L--TIFSLLLLYAVFIFLKSFIREIVFDIKDIEG  188 (285)
T ss_pred             HHHh-cc----c--ccchHHHHHHHHHHHHHHHHHHHHhcccchh
Confidence            5443 11    1  1344455556666777788999999999985

>PRK12875 ubiA prenyltransferase; Reviewed

Probab=99.86  E-value=3.6e-20  Score=157.64  Aligned_cols=183  Identities=16%  Similarity=0.211  Sum_probs=109.8

Q ss_pred             hHHHHHHHHHhhhchhhHHHHHHHHHHHHHhcCCCCCC-CCHHHHHHHHHHHHHH--HHHHHHHHHhhhhhhhhccccCC
Q 028504            3 VLNKKCDAFYRLTRPYSCVSIIAALLSVSLLPLQSPAD-FTPKLIIEAFKCMVPA--IMMNNYANAINQLADVHIDKVNK   79 (208)
Q Consensus         3 ~~~~~~~~~l~l~Rp~~~~~~~~~~~~g~~la~~~~~~-~~~~~~~~~l~~~l~~--~l~~~a~~~iNd~~D~~~D~~~~   79 (208)
                      ....+++.++++.||+++..+..+++.|..+|....++ +++..     +++++.  +..+...|.+|||+|+|+||.|+
T Consensus         3 ~~~~~~~~l~~l~RP~~~~~~~~p~l~G~~lA~~~~~~~~~~~~-----~~ll~~~~i~~Nl~~y~iND~~D~D~Dr~~p   77 (282)
T PRK12875          3 SLGDRLRYLLVLSRPRFWLYLAGPVVVGVAYAADSVADLFSPAA-----VALFAYFLFPANVFLYGVNDVFDADTDELNP   77 (282)
T ss_pred             chHHHHHHHHHHhCccchHHHHHHHHHHHHHHhccCcccccHHH-----HHHHHHHHHHHHHHHhcchhhhhhhccccCC
Confidence            45678999999999999999999999999998653222 23211     111222  22333456689999999999986


Q ss_pred             CCC---ccc-CCccCHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhHhccCCCCCccccccCchhHHHHHHHH
Q 028504           80 PYL---PLA-CGDFSMGEGLAITIASPLMAVAMGIMLRSPPLVIGFIIWCIVGGAYSIDLPPLLRWKGNPLMAAVTIISM  155 (208)
Q Consensus        80 ~~R---Pl~-sG~is~~~a~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~Ys~~~P~p~~lK~~~~~~~~~v~~~  155 (208)
                      ++|   |++ +++.+...+   ......+++.+....++...... ++.+++.+.||.  | |+|+|+++..+....+..
T Consensus        78 rk~~~r~~~~s~~~~~~~~---~~l~~~l~l~l~~~~~~~~~~~l-l~~i~~~~~YS~--p-P~rlk~~p~~~~~~~g~~  150 (282)
T PRK12875         78 KKDREREVRYRGDRRVLVA---VALSGALALAFLLVLPPAAWPAL-LAFLVLSVEYSA--P-PLRFKTTPVLDSLSNGLY  150 (282)
T ss_pred             CccCCCCccHHHHHHHHHH---HHHHHHHHHHHHHHhhHHHHHHH-HHHHHHHHHHcC--C-CccchhccHHHHHHHHHH
Confidence            544   443 222222211   11122333333334443333222 334468999999  7 999999998776543322


Q ss_pred             HhHHHHHHHHHHHHHHHhcCCccccHHHHHHHHHHHHHHHHHHHhhcCCcccC
Q 028504          156 NGLLLLFPFFIHFQKIVLGNPVAFTKPVLFTAAYMVIWNAAIAFVKVTNSEIE  208 (208)
Q Consensus       156 ~g~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~D~~~  208 (208)
                        .....+.|+. ++   | .  .++...+..  ..+++.++.+.||++|+|+
T Consensus       151 --~~~~~~~y~~-~t---g-~--~~~~~l~~a--~~l~~~~~~~in~i~Die~  192 (282)
T PRK12875        151 --ILPGVAAYAL-VS---G-S--LPPLLAVAG--GWLWAMGMHTFSAIPDIEP  192 (282)
T ss_pred             --HHHHHHHHHH-Hc---C-C--CcHHHHHHH--HHHHHHHHHHHHhccCHHH
Confidence              1233344333 22   1 1  334333333  3588899999999999985

>PRK13591 ubiA prenyltransferase; Provisional

Probab=99.84  E-value=3e-19  Score=152.41  Aligned_cols=139  Identities=15%  Similarity=0.065  Sum_probs=101.3

Q ss_pred             HHHHHHHHHHHHhhhhhhhhccccCCCCCcccCCccCHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhHhccC
Q 028504           54 VPAIMMNNYANAINQLADVHIDKVNKPYLPLACGDFSMGEGLAITIASPLMAVAMGIMLRSPPLVIGFIIWCIVGGAYSI  133 (208)
Q Consensus        54 l~~~l~~~a~~~iNd~~D~~~D~~~~~~RPl~sG~is~~~a~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~Ys~  133 (208)
                      +.+.+...++|++|||+|+|+|++|+|+||.+    |++.+..++.+..++|+.+++..|+..  ++.+.. ..++.||.
T Consensus        65 ~~~~L~~~s~~~iNd~~D~eiD~IN~P~r~~~----s~~~a~~ls~la~llGl~La~~~g~~l--l~ll~~-l~g~lYS~  137 (307)
T PRK13591         65 IAGGLIIYSVYTLDRALDSEEDAVNRSELIGS----NKKIGLLVSLLAFLLGTYILAMDGMLL--LAFLPF-ITGYLYSK  137 (307)
T ss_pred             HHHHHHHHHHHHHhhhccchhhhccCcccccc----CHHHHHHHHHHHHHHHHHHHHHHhHHH--HHHHHH-HHHHHhcC
Confidence            34567788999999999999999999999986    899999999999999999988887643  344444 58999997


Q ss_pred             C---CCCccccccCchhHHHHHHHHHhHHHHHHHHHHHHHHHhcCCccccHHHHHHHHHHHHHHHHHHHhhcCCcccC
Q 028504          134 D---LPPLLRWKGNPLMAAVTIISMNGLLLLFPFFIHFQKIVLGNPVAFTKPVLFTAAYMVIWNAAIAFVKVTNSEIE  208 (208)
Q Consensus       134 ~---~P~p~~lK~~~~~~~~~v~~~~g~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~D~~~  208 (208)
                      |   .|.|+++|+++.+||+.++..+|..+..+.    +.  .....   .+......+.....++.+++||+||+|+
T Consensus       138 Glk~~P~plklK~~~glGnl~V~i~~G~~i~g~~----g~--~~~~~---~~~~~i~l~~~~~l~~~~iindirDiEG  206 (307)
T PRK13591        138 GIKIGKFALKLKGGLGVKNIVVGITWGGFIAGIA----GS--YCGSL---IPVGLIFLFFGVKLFINSCVYDFKDVKG  206 (307)
T ss_pred             CCCCCCccccccCCCchhHHHHHHHHHHHHHHHH----Hh--hhhhH---HHHHHHHHHHHHHHHHHHHHHHhhhhHh
Confidence            5   366779999999999999999997543221    11  11110   1111111122222356779999999985

>KOG1381 consensus Para-hydroxybenzoate-polyprenyl transferase [Coenzyme transport and metabolism]

Probab=99.65  E-value=7.3e-17  Score=133.69  Aligned_cols=159  Identities=16%  Similarity=0.168  Sum_probs=113.3

Q ss_pred             HHHHHHHHhhhchhhHHHHHHHHHH---HHHhcCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhcccc--CC
Q 028504            5 NKKCDAFYRLTRPYSCVSIIAALLS---VSLLPLQSPADFTPKLIIEAFKCMVPAIMMNNYANAINQLADVHIDKV--NK   79 (208)
Q Consensus         5 ~~~~~~~l~l~Rp~~~~~~~~~~~~---g~~la~~~~~~~~~~~~~~~l~~~l~~~l~~~a~~~iNd~~D~~~D~~--~~   79 (208)
                      +++++.|.|++|.+.++++.+....   ..+.+..  .+..+..-..-+.+ .+.+++++++|.|||.+|+|+|++  +.
T Consensus        61 p~r~~pYaqLmRldkPiGTwLLywPCtWSIamaAd--ag~~p~~~mL~LFG-~GAllMRgAGCtINDlwDkdlD~KVeRt  137 (353)
T KOG1381|consen   61 PKRWKPYAQLMRLDKPIGTWLLYWPCTWSIAMAAD--AGLLPSIKMLALFG-VGALLMRGAGCTINDLWDKDLDAKVERT  137 (353)
T ss_pred             CccchhHHHHHhcCCCceeeeeecchHHHHHhccC--CCccchhHHHHHhc-ccHHHhccCCceehhhhhhhhhhhHhhh
Confidence            4678999999999988887654332   2233332  22222211111112 578999999999999999999986  34


Q ss_pred             CCCcccCCccCHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhHhccCCCCCccccccCchhHHHHHHHHHhHH
Q 028504           80 PYLPLACGDFSMGEGLAITIASPLMAVAMGIMLRSPPLVIGFIIWCIVGGAYSIDLPPLLRWKGNPLMAAVTIISMNGLL  159 (208)
Q Consensus        80 ~~RPl~sG~is~~~a~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~Ys~~~P~p~~lK~~~~~~~~~v~~~~g~~  159 (208)
                      +.||++||++|+++|..+-.+.+.+++.+...+|+.+..++.. .+...+.|+.       +||.+++.++..+    +.
T Consensus       138 klRPlAsG~ls~~qaI~fL~~ql~~gLgiLlqLn~ysi~lg~~-sl~~v~~ypl-------~kr~TY~pq~vLg----lt  205 (353)
T KOG1381|consen  138 KLRPLASGSLSPRQAIGFLGAQLSLGLGILLQLNWYSIALGAS-SLALVITYPL-------MKRFTYWPQLVLG----LT  205 (353)
T ss_pred             cccccccCCcchhHHHHHHHHHHHHhHHHHHhccHHHHHhccc-ccccEEEeeh-------hhhcchhHHHHHh----hh
Confidence            7999999999999999999999999999988899988877753 3356677754       9999999997654    44


Q ss_pred             HHHHHHHHHHHHHhcCCcccc
Q 028504          160 LLFPFFIHFQKIVLGNPVAFT  180 (208)
Q Consensus       160 ~~~g~~~~~~~~~~~~~~~~~  180 (208)
                      +.+|....  ..+.++....|
T Consensus       206 fnwGAllG--w~A~~g~~~~s  224 (353)
T KOG1381|consen  206 FNWGALLG--WCALKGSLSPS  224 (353)
T ss_pred             cchhhhhc--chhhcCccChh
Confidence            55665443  34455554433

>KOG1380 consensus Heme A farnesyltransferase [Coenzyme transport and metabolism]

Probab=99.48  E-value=5.6e-15  Score=125.14  Aligned_cols=148  Identities=16%  Similarity=0.143  Sum_probs=121.4

Q ss_pred             HHHHHHHhhhchhhHHHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhccccCC--CCCc
Q 028504            6 KKCDAFYRLTRPYSCVSIIAALLSVSLLPLQSPADFTPKLIIEAFKCMVPAIMMNNYANAINQLADVHIDKVNK--PYLP   83 (208)
Q Consensus         6 ~~~~~~l~l~Rp~~~~~~~~~~~~g~~la~~~~~~~~~~~~~~~l~~~l~~~l~~~a~~~iNd~~D~~~D~~~~--~~RP   83 (208)
                      +.++.|+||.||+.....+.+...|+.++.+.   +++.-   ++...+++.++++++|.+||+++.+.|.+|+  ++||
T Consensus        92 k~~~~y~eLsK~rLT~LVV~tt~~gYalap~p---~s~~~---l~~~tvGT~L~S~sANaiNQ~~E~~~DsqM~RT~~Rp  165 (409)
T KOG1380|consen   92 KYARCYLELSKPRLTMLVVLTTMTGYALAPGP---FSFPT---LLYTTVGTGLCSASANAINQIFEPPFDSQMKRTQNRP  165 (409)
T ss_pred             chHHHHHHhcccceEEEEeeeccccccccccC---CCcch---hHHHhhhhHHHHhhhHhhhhhccCCchhhhHhhcccc
Confidence            34789999999999998888888999988653   33222   2234579999999999999999999999876  6999


Q ss_pred             ccCCccCHHHHHHHHHHHHHHHHHHH-HHhhHHHHHHHHHHHHHHhHhccCCCCCccccccCchhHHHHHHHHHhHHHHH
Q 028504           84 LACGDFSMGEGLAITIASPLMAVAMG-IMLRSPPLVIGFIIWCIVGGAYSIDLPPLLRWKGNPLMAAVTIISMNGLLLLF  162 (208)
Q Consensus        84 l~sG~is~~~a~~~~~~l~~~~~~l~-~~~~~~~~~~~~~~~~~~~~~Ys~~~P~p~~lK~~~~~~~~~v~~~~g~~~~~  162 (208)
                      +++|++||.+|+.++.+....|+.+. +.+|+....++..-++++..+|+-       +||.. ..|--+|.+.|.++++
T Consensus       166 lv~g~isp~hA~~fAt~~g~~G~slL~~gvNpl~a~Lga~Ni~LY~~vYTP-------lKrih-iinTWvGavVGAIPPL  237 (409)
T KOG1380|consen  166 LVRGRISPLHAVTFATLTGTAGVSLLAFGVNPLAAALGAGNIFLYAGVYTP-------LKRIH-IINTWVGAVVGAIPPL  237 (409)
T ss_pred             cccCccChHHHHHHHHHhccccceeeeecccHHHHHHhhcchheeeccccc-------hhhhh-hhhhHHHHHhccCCcc
Confidence            99999999999999999999998764 458998888887777788899984       88865 5688889999988665


Q ss_pred             HHHHH
Q 028504          163 PFFIH  167 (208)
Q Consensus       163 g~~~~  167 (208)
                      =.|.+
T Consensus       238 MGwAA  242 (409)
T KOG1380|consen  238 MGWAA  242 (409)
T ss_pred             chhhh
Confidence            55433

>KOG4581 consensus Predicted membrane protein [Function unknown]

Probab=98.74  E-value=7.6e-10  Score=90.43  Aligned_cols=190  Identities=17%  Similarity=0.129  Sum_probs=130.2

Q ss_pred             HHHHHHHHHhhhchhhHHHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHhhhhhhh--hccccCCCC
Q 028504            4 LNKKCDAFYRLTRPYSCVSIIAALLSVSLLPLQSPADFTPKLIIEAFKCMVPAIMMNNYANAINQLADV--HIDKVNKPY   81 (208)
Q Consensus         4 ~~~~~~~~l~l~Rp~~~~~~~~~~~~g~~la~~~~~~~~~~~~~~~l~~~l~~~l~~~a~~~iNd~~D~--~~D~~~~~~   81 (208)
                      ..+|.+.|+-..||+....++.++..|..+|..+...-++... ..++..++.+..+.++|..|.|+|.  .+|++..-+
T Consensus        57 ~~~k~~syllalrpws~sasl~p~~lgsalayrs~~~~d~~l~-~~fl~a~avlavh~agnlvntyfdf~kgid~kkadd  135 (359)
T KOG4581|consen   57 TFMKCASYLLALRPWSFSASLTPTALGSALAYRSHGAEDFRLA-TFFLCAFAVLAVHCAGNLVNTYFDFIKGIDHKKADD  135 (359)
T ss_pred             HHHHHHHHHhhhcccccccccchHhhhhHHHHhhccccchhHH-HHHHHHhhheeeecccchhhhhhhhhhccccccccc
Confidence            3467899999999999999999999999988753222233222 2233445777889999999999997  489887789


Q ss_pred             CcccCCccCHHHHHHHHHHHHHHHHHH---HHHhhHH---HHHHHHHHHHHHhHhccCCCCCccccccCchhHHHHHHHH
Q 028504           82 LPLACGDFSMGEGLAITIASPLMAVAM---GIMLRSP---PLVIGFIIWCIVGGAYSIDLPPLLRWKGNPLMAAVTIISM  155 (208)
Q Consensus        82 RPl~sG~is~~~a~~~~~~l~~~~~~l---~~~~~~~---~~~~~~~~~~~~~~~Ys~~~P~p~~lK~~~~~~~~~v~~~  155 (208)
                      |.++...+.+.+...++..+..+|...   ...+++.   -+.+...++..-.+.|+.|    ..+| +-.+|.+.+-+.
T Consensus       136 rtlvd~il~~~dvv~~g~~ly~~gc~~~~~l~~lsp~klehlaliyfggls~sflytgg----igfk-yialgdliili~  210 (359)
T KOG4581|consen  136 RTLVDHILEKDDVVRFGAFLYMAGCGCAACLAVLSPAKLEHLALIYFGGLSGSFLYTGG----IGFK-YIALGDLIILIL  210 (359)
T ss_pred             hhHHHHhcChhheehhhHHHHHhcchHHHHHHhCCHhhhhhhhhhhccCcccceeEecc----cceE-EEeccCEEEEEe
Confidence            999999999999999999888877543   2334443   2333344444567899985    3577 456788877777


Q ss_pred             HhHH-HHHHHHHHHHHHHhcCCccccHHHHHHHHHHHHHHHHHHHhhcCCccc
Q 028504          156 NGLL-LLFPFFIHFQKIVLGNPVAFTKPVLFTAAYMVIWNAAIAFVKVTNSEI  207 (208)
Q Consensus       156 ~g~~-~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~D~~  207 (208)
                      +|++ ..+.+.  .|.+..    .+-+.  -.++.+.+-+-++.+.||.||.+
T Consensus       211 fgpiavlfaf~--~q~g~l----~~~~l--~yaiplalnteailhsnntrd~d  255 (359)
T KOG4581|consen  211 FGPIAVLFAFA--IQTGHL----AIFPL--GYAIPLALNTEAILHSNNTRDAD  255 (359)
T ss_pred             echHHHHHHHH--HhcCce----eEEee--hheeeeccchHHHhccCCCcccc
Confidence            7765 222222  233221    12111  12345556677889999999987

>PRK12872 ubiA prenyltransferase; Reviewed

Probab=94.38  E-value=0.19  Score=42.62  Aligned_cols=34  Identities=15%  Similarity=0.232  Sum_probs=24.8

Q ss_pred             HHHHHHHHHHHhhhhhhhhccccC-CCCCcccCCc
Q 028504           55 PAIMMNNYANAINQLADVHIDKVN-KPYLPLACGD   88 (208)
Q Consensus        55 ~~~l~~~a~~~iNd~~D~~~D~~~-~~~RPl~sG~   88 (208)
                      ..++....-.++||..|+|.||.+ .|.=|..-|+
T Consensus       169 ~~fl~~~~~~~~~d~~D~e~D~~~G~~Tlpv~lG~  203 (285)
T PRK12872        169 FIFLKSFIREIVFDIKDIEGDRKSGLKTLPIVLGK  203 (285)
T ss_pred             HHHHHHHHHHHHHhcccchhHHHcCCcccchhcch
Confidence            334445566689999999999975 4677776665

>PRK13591 ubiA prenyltransferase; Provisional

Probab=94.20  E-value=0.31  Score=42.22  Aligned_cols=66  Identities=18%  Similarity=0.300  Sum_probs=38.0

Q ss_pred             HhhhhhhhhccccC-CCCCcccCCccCHHHHHHHHHHHHHHHH---HHHHH---h--hHHHHHHHHHHHHHHhHhccC
Q 028504           65 AINQLADVHIDKVN-KPYLPLACGDFSMGEGLAITIASPLMAV---AMGIM---L--RSPPLVIGFIIWCIVGGAYSI  133 (208)
Q Consensus        65 ~iNd~~D~~~D~~~-~~~RPl~sG~is~~~a~~~~~~l~~~~~---~l~~~---~--~~~~~~~~~~~~~~~~~~Ys~  133 (208)
                      ++||+.|.|.||.+ ++.-|+.=|+   +.+..+...+...+.   +.+..   +  .+...+.+++..+.+...|+.
T Consensus       197 iindirDiEGDr~~G~kTLPV~lG~---~~A~~l~~~l~~~~~l~li~~~~~g~l~~~~~~~~~s~~~~l~~~~~~~~  271 (307)
T PRK13591        197 CVYDFKDVKGDTLAGIKTLPVSLGE---QKTRNLLLGIHLFSHLVLGIALIFGVIAFEPIILLYSFVCGLICIQVYSS  271 (307)
T ss_pred             HHHHhhhhHhHHHcCCeeEEEEECH---HHHHHHHHHHHHHHHHHHHHHHHHHHhccCchhhHHHHHHHHHHHHHHcC
Confidence            68999999999986 4667766554   333333333332221   22222   2  233344445555578899998

>PRK13387 1,4-dihydroxy-2-naphthoate octaprenyltransferase; Provisional

Probab=94.14  E-value=0.26  Score=42.91  Aligned_cols=51  Identities=18%  Similarity=0.103  Sum_probs=33.5

Q ss_pred             HHHHHHHHHHHHHhhhhhhhhccccCC-CCCcccCCccCHHHHHHHHHHHHHHHH
Q 028504           53 MVPAIMMNNYANAINQLADVHIDKVNK-PYLPLACGDFSMGEGLAITIASPLMAV  106 (208)
Q Consensus        53 ~l~~~l~~~a~~~iNd~~D~~~D~~~~-~~RPl~sG~is~~~a~~~~~~l~~~~~  106 (208)
                      .+...+..+.....||+.|+|.||.+. ++-|.   ++.+|.+..+...+...+.
T Consensus       195 slp~g~l~~~ill~Nn~~D~e~D~~~gk~TL~v---~lG~~~a~~l~~~l~~~a~  246 (317)
T PRK13387        195 SLPIIFTIANIMLANNLRDLDEDIKNHRYTLVY---YIGREKGVVLFAILFYASY  246 (317)
T ss_pred             HHHHHHHHHHHHHhcCCccchhHHHcCCeeeee---eEcHHhHHHHHHHHHHHHH
Confidence            345556667778899999999999864 45554   3445566555555555443

>TIGR01475 ubiA_other putative 4-hydroxybenzoate polyprenyltransferase

Probab=93.29  E-value=0.77  Score=39.04  Aligned_cols=35  Identities=17%  Similarity=0.138  Sum_probs=26.1

Q ss_pred             HHHHHHHHHHHHhhhhhhhhccccC-CCCCcccCCc
Q 028504           54 VPAIMMNNYANAINQLADVHIDKVN-KPYLPLACGD   88 (208)
Q Consensus        54 l~~~l~~~a~~~iNd~~D~~~D~~~-~~~RPl~sG~   88 (208)
                      +..++-+.+-..+||..|+|.|+.. .|.-|+.-|+
T Consensus       165 ~~~~~w~~~~~~i~~~~D~e~D~~~G~~tlpv~~G~  200 (282)
T TIGR01475       165 IGVGFWIAGFDLIYAIQDYEFDRKNGLHSIPARFGI  200 (282)
T ss_pred             HHHHHHHHHHHHHHHHhhHHhHHHcCCCchHHHhch
Confidence            3445556666789999999999864 5788887773

A fairly deep split separates this polyprenyltransferase subfamily from the set of mitochondrial and proteobacterial 4-hydroxybenzoate polyprenyltransferases, described in TIGR01474. Protoheme IX farnesyltransferase (heme O synthase) (TIGR01473) is more distantly related. Because no species appears to have both this protein and a member of TIGR01474, it is likely that This model represents 4-hydroxybenzoate polyprenyltransferase, a critical enzyme of ubiquinone biosynthesis, in the Archaea, Gram-positive bacteria, Aquifex aeolicus, the Chlamydias, etc.

>PRK07419 1,4-dihydroxy-2-naphthoate octaprenyltransferase; Provisional

Probab=93.29  E-value=0.46  Score=41.13  Aligned_cols=46  Identities=7%  Similarity=-0.096  Sum_probs=29.6

Q ss_pred             HHHHHHHHHhhhhhhhhccccCC-CCCcccCCccCHHHHHHHHHHHHHHH
Q 028504           57 IMMNNYANAINQLADVHIDKVNK-PYLPLACGDFSMGEGLAITIASPLMA  105 (208)
Q Consensus        57 ~l~~~a~~~iNd~~D~~~D~~~~-~~RPl~sG~is~~~a~~~~~~l~~~~  105 (208)
                      .+..+.....||+-|+|.||.+. ++-|.-   +.++.+..+...+...+
T Consensus       184 gll~~~IL~~Nn~rD~e~D~~~Gk~TL~v~---lG~~~a~~ly~~l~~~a  230 (304)
T PRK07419        184 GLATSLILFCSHFHQVEDDLAAGKRSPIVR---LGTKRGAQLLPWIVGLI  230 (304)
T ss_pred             HHHHHHHHHHcCCcchhhHHHcCCcceeee---echHhHHHHHHHHHHHH
Confidence            35566777899999999999864 455543   44455554444444443

>TIGR01474 ubiA_proteo 4-hydroxybenzoate polyprenyl transferase, proteobacterial

Probab=93.11  E-value=1.2  Score=37.98  Aligned_cols=37  Identities=19%  Similarity=0.106  Sum_probs=28.2

Q ss_pred             HHHHHHHHHHHHhhhhhhhhccccC-CCCCcccCCccC
Q 028504           54 VPAIMMNNYANAINQLADVHIDKVN-KPYLPLACGDFS   90 (208)
Q Consensus        54 l~~~l~~~a~~~iNd~~D~~~D~~~-~~~RPl~sG~is   90 (208)
                      ++.++-+.+-...|++.|+|.||.. .|.-|+.-|+-+
T Consensus       167 ~~~~lw~~~~~~~~a~~D~e~D~~~G~~tlpv~~G~~~  204 (281)
T TIGR01474       167 LANILWTLGYDTIYAMQDKEDDIKIGVKSTALRFGDNT  204 (281)
T ss_pred             HHHHHHHHHHHHHHHHhhHHhHHHcCCCcccHHhhhhh
Confidence            4555666677789999999999975 578888777543

A fairly deep split by both clustering (UPGMA) and phylogenetics (NJ tree) separates this group (mostly Proteobacterial and mitochondrial), with several characterized members, from another group (mostly archaeal and Gram-positive bacterial) lacking characterized members.

>PLN02922 prenyltransferase

Probab=92.60  E-value=0.68  Score=40.25  Aligned_cols=49  Identities=8%  Similarity=0.008  Sum_probs=31.7

Q ss_pred             HHHHHHHHHHHHhhhhhhhhccccCC-CCCcccCCccCHHHHHHHHHHHHHHH
Q 028504           54 VPAIMMNNYANAINQLADVHIDKVNK-PYLPLACGDFSMGEGLAITIASPLMA  105 (208)
Q Consensus        54 l~~~l~~~a~~~iNd~~D~~~D~~~~-~~RPl~sG~is~~~a~~~~~~l~~~~  105 (208)
                      +...+..+.....||+.|+|.||++. ++-|+   ++.++.+..+...+...+
T Consensus       195 lp~gll~~~iL~~Nn~rD~e~D~~~Gk~TL~v---~lG~~~a~~l~~~l~~~~  244 (315)
T PLN02922        195 VLVGLTTTLILFCSHFHQIDGDRAVGKMSPLV---RLGTEKGSRVVRWAVLLL  244 (315)
T ss_pred             HHHHHHHHHHHHHccCcchhhHHHcCccceee---EEChHHHHHHHHHHHHHH
Confidence            34445666777899999999999875 45554   344555555554444444

>PRK13106 ubiA prenyltransferase; Reviewed

Probab=92.33  E-value=0.92  Score=39.19  Aligned_cols=49  Identities=12%  Similarity=0.132  Sum_probs=31.5

Q ss_pred             HHHHHHHHHHHHhhhhhhhhccccC-CCCCcccCCccCHHHHHHHHHHHH
Q 028504           54 VPAIMMNNYANAINQLADVHIDKVN-KPYLPLACGDFSMGEGLAITIASP  102 (208)
Q Consensus        54 l~~~l~~~a~~~iNd~~D~~~D~~~-~~~RPl~sG~is~~~a~~~~~~l~  102 (208)
                      ++.++-+.+-.++|+..|+|-|++. .|+-|+-=|+-+.+-+..+.....
T Consensus       184 ~~~~lw~~~~d~iya~~D~e~D~~~Gi~Slpv~~G~~a~~~~~~~~~~~v  233 (300)
T PRK13106        184 IGTILWAAGFDLYNHIPDAEFDREMGLHSFAVVLGKWALTFAGLNQLFSV  233 (300)
T ss_pred             HHHHHHHHHHHHHHHccchhhHHHCCCCccHHHHhhhHHHHHHHHHHHHH
Confidence            3455566666789999999999865 477787666444443333333333

>PLN00012 chlorophyll synthetase; Provisional

Probab=92.26  E-value=0.87  Score=40.60  Aligned_cols=33  Identities=18%  Similarity=0.159  Sum_probs=25.5

Q ss_pred             HHHHHHHHHhhhhhhhhccccC-CCCCcccCCcc
Q 028504           57 IMMNNYANAINQLADVHIDKVN-KPYLPLACGDF   89 (208)
Q Consensus        57 ~l~~~a~~~iNd~~D~~~D~~~-~~~RPl~sG~i   89 (208)
                      .+...+-...||+.|+|.||+. +|.-|+.-|+-
T Consensus       262 ~l~~lai~ivnd~~Die~Dr~aG~~TLpV~~G~~  295 (375)
T PLN00012        262 SIAGLGIAIVNDFKSIEGDRALGLQSLPVAFGVE  295 (375)
T ss_pred             HHHHHHHHHHhhhcchhhHHHcCCcccceeechH
Confidence            3456667789999999999875 57788777753

>COG1575 MenA 1,4-dihydroxy-2-naphthoate octaprenyltransferase [Coenzyme metabolism]

Probab=91.88  E-value=1.1  Score=38.66  Aligned_cols=52  Identities=17%  Similarity=0.087  Sum_probs=33.8

Q ss_pred             HHHHHHHHHHHHHHhhhhhhhhccccCCCCCcccCCccCHHHHHHHHHHHHHHH
Q 028504           52 CMVPAIMMNNYANAINQLADVHIDKVNKPYLPLACGDFSMGEGLAITIASPLMA  105 (208)
Q Consensus        52 ~~l~~~l~~~a~~~iNd~~D~~~D~~~~~~RPl~sG~is~~~a~~~~~~l~~~~  105 (208)
                      ..+......+..+..|+..|.|.|++|.|+-+.  =++..+.+..+...+...+
T Consensus       181 ~slp~gil~~~Il~aNNirDie~D~~~gk~TLa--vrLG~~~~~~l~~~l~~~a  232 (303)
T COG1575         181 PSLPVGILIANILLANNLRDIEEDIRNGKYTLA--VRLGRKNARKLYAALLVVA  232 (303)
T ss_pred             HHHHHHHHHHHHHHhcccccchhHHhcCCccee--eeeccHhHHHHHHHHHHHH
Confidence            335566677778889999999999998764332  2445555555444444444

>PRK12875 ubiA prenyltransferase; Reviewed

Probab=91.80  E-value=5.1  Score=34.28  Aligned_cols=54  Identities=13%  Similarity=0.014  Sum_probs=35.8

Q ss_pred             HHHHHHHHHHHhhhhhhhhccccC-CCCCcccCCccCHHHHHHHHHHHHHHHHHHHHH
Q 028504           55 PAIMMNNYANAINQLADVHIDKVN-KPYLPLACGDFSMGEGLAITIASPLMAVAMGIM  111 (208)
Q Consensus        55 ~~~l~~~a~~~iNd~~D~~~D~~~-~~~RPl~sG~is~~~a~~~~~~l~~~~~~l~~~  111 (208)
                      +..+.+.+...+||+.|+|.||+. +|.-|.   ++..+.+..+...+..++..+-..
T Consensus       173 a~~l~~~~~~~in~i~Die~D~~aGi~Tlav---~lG~~~a~~~~~~~~~~a~~~~~~  227 (282)
T PRK12875        173 GGWLWAMGMHTFSAIPDIEPDRAAGIRTTAT---VLGERRTYAYCAACWLLAAAAFAA  227 (282)
T ss_pred             HHHHHHHHHHHHHhccCHHHHHHcCCccchh---hccHhhHHHHHHHHHHHHHHHHHH
Confidence            445666677889999999999975 455554   444566666666666555544333

>PRK13105 ubiA prenyltransferase; Reviewed

Probab=91.68  E-value=0.96  Score=38.75  Aligned_cols=56  Identities=11%  Similarity=0.116  Sum_probs=39.6

Q ss_pred             HHHHHHHHHHHhhhhhhhhccccCC-CCCcccCCccCHHHHHHHHHHHHHHHHHHHHHhh
Q 028504           55 PAIMMNNYANAINQLADVHIDKVNK-PYLPLACGDFSMGEGLAITIASPLMAVAMGIMLR  113 (208)
Q Consensus        55 ~~~l~~~a~~~iNd~~D~~~D~~~~-~~RPl~sG~is~~~a~~~~~~l~~~~~~l~~~~~  113 (208)
                      +..+...+..++||+-|.|.||.+. +.=|.   ++.+|.+..++..+.+++.++....+
T Consensus       168 ~~~~~~~a~~ii~~irDie~Dr~~G~~Tlpv---~lG~~~a~~~~~~l~~~a~~~~~~~~  224 (282)
T PRK13105        168 AFFLWGMASHAFGAVQDVVADREAGIASIAT---VLGARRTVRLAVGLYAAAAVLMLALP  224 (282)
T ss_pred             HHHHHHHHHHHHHhCcchHhHHHcCCccchH---HhcHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3444567778999999999999764 45553   56678888888887777765544433

>TIGR02235 menA_cyano-plnt 1,4-dihydroxy-2-naphthoate phytyltransferase

Probab=91.53  E-value=1  Score=38.54  Aligned_cols=49  Identities=6%  Similarity=-0.116  Sum_probs=32.4

Q ss_pred             HHHHHHHHHHHhhhhhhhhccccCC-CCCcccCCccCHHHHHHHHHHHHHHHH
Q 028504           55 PAIMMNNYANAINQLADVHIDKVNK-PYLPLACGDFSMGEGLAITIASPLMAV  106 (208)
Q Consensus        55 ~~~l~~~a~~~iNd~~D~~~D~~~~-~~RPl~sG~is~~~a~~~~~~l~~~~~  106 (208)
                      ...+..++....||+-|+|.||.+. ++-|+   ++.++.+..+...+...+.
T Consensus       169 ~~gl~~~~iL~~Nn~rD~e~D~~~Gk~TL~v---~lG~~~a~~l~~~l~~~~y  218 (285)
T TIGR02235       169 LVGLATTLILFCSHFHQVEDDLAHGKRSPVV---RLGTKLAAKIVPWVISLSY  218 (285)
T ss_pred             HHHHHHHHHHHhcCCccchhHHHcCCcceeh---eecHHhHHHHHHHHHHHHH
Confidence            3345667777899999999999864 45554   4445666555555555443

This family of phytyltransferases, found in plants and cyanobacteria, are involved in the biosythesis of phylloquinone (Vitamin K1). Phylloquinone is a critical component of photosystem I. The closely related MenA enzyme from bacteria transfers a prenyl group (which only differs in the saturation of the isoprenyl groups) in the biosynthesis of menaquinone. Activity towards both substrates in certain organisms should be considered a possibility.

>PRK09573 (S)-2,3-di-O-geranylgeranylglyceryl phosphate synthase; Reviewed

Probab=91.36  E-value=1.1  Score=38.06  Aligned_cols=34  Identities=18%  Similarity=0.180  Sum_probs=24.2

Q ss_pred             HHHHHHHHHHHhhhhhhhhccccC-CCCCcccCCc
Q 028504           55 PAIMMNNYANAINQLADVHIDKVN-KPYLPLACGD   88 (208)
Q Consensus        55 ~~~l~~~a~~~iNd~~D~~~D~~~-~~~RPl~sG~   88 (208)
                      ..++.+.+-...||+.|+|.|+.. .|.-|+.-|+
T Consensus       162 ~~f~~~~~~~~~~~~~D~~~D~~~G~~tlpv~~G~  196 (279)
T PRK09573        162 CAFFSTWSREIVKDIEDIEGDLKENVITLPIKYGI  196 (279)
T ss_pred             HHHHHHHHHHHHhhhhhhhhHHHCCCccccHHhhH
Confidence            334445566678999999999964 5777776664

>PRK07566 bacteriochlorophyll/chlorophyll a synthase; Reviewed

Probab=91.23  E-value=1.6  Score=37.88  Aligned_cols=32  Identities=19%  Similarity=0.204  Sum_probs=24.0

Q ss_pred             HHHHHHHHhhhhhhhhccccC-CCCCcccCCcc
Q 028504           58 MMNNYANAINQLADVHIDKVN-KPYLPLACGDF   89 (208)
Q Consensus        58 l~~~a~~~iNd~~D~~~D~~~-~~~RPl~sG~i   89 (208)
                      +...+....||+.|+|.||.. +|.-|+.-|+-
T Consensus       200 l~~~~~~~~~d~~D~e~D~~aG~~Tlpv~~G~~  232 (314)
T PRK07566        200 LGAHGIMTLNDFKSVEGDRQLGLRSLPVVFGEK  232 (314)
T ss_pred             HHHHHHHHHHHHHHhHhHHHcCCcccceeEcHH
Confidence            345556789999999999975 57777766653

>PRK12886 ubiA prenyltransferase; Reviewed

Probab=90.82  E-value=1.9  Score=36.93  Aligned_cols=35  Identities=14%  Similarity=0.180  Sum_probs=24.7

Q ss_pred             HHHHHHHHHHHhhhhhhhhccccC-CCCCcccCCcc
Q 028504           55 PAIMMNNYANAINQLADVHIDKVN-KPYLPLACGDF   89 (208)
Q Consensus        55 ~~~l~~~a~~~iNd~~D~~~D~~~-~~~RPl~sG~i   89 (208)
                      ..++-+.+-..+|++.|+|-||+. .|.-|+.-|+-
T Consensus       170 ~~~lw~~~~~~~~a~~D~e~D~~aGi~slpv~~G~~  205 (291)
T PRK12886        170 AVLFWVAGFDILYALQDLEFDRKEGLHSIPAKLGVN  205 (291)
T ss_pred             HHHHHHHHHHHHHHhccHHhHHHcCCcCcchhcCch
Confidence            334445555578889999999864 57888877763

>PRK12392 bacteriochlorophyll c synthase; Provisional

Probab=90.81  E-value=0.81  Score=40.07  Aligned_cols=37  Identities=19%  Similarity=0.110  Sum_probs=26.2

Q ss_pred             HHHHHHHHHHHhhhhhhhhccccC-CCCCcccCCccCH
Q 028504           55 PAIMMNNYANAINQLADVHIDKVN-KPYLPLACGDFSM   91 (208)
Q Consensus        55 ~~~l~~~a~~~iNd~~D~~~D~~~-~~~RPl~sG~is~   91 (208)
                      ...+...+-..+||+.|+|-||.. +++-|+.=|+=..
T Consensus       188 ~~~l~~~~~~~i~d~~D~egD~~~G~kTlpV~~G~~~a  225 (331)
T PRK12392        188 LNFFMAIALIIMNDFKSVEGDKEGGLKSLTVMIGAKNT  225 (331)
T ss_pred             HHHHHHHHHHHHHcccchhhHHHcCCeeeEeEEcHhhH
Confidence            344556666779999999999975 5677776564433

>TIGR02056 ChlG chlorophyll synthase, ChlG

Probab=90.80  E-value=1.6  Score=37.74  Aligned_cols=44  Identities=18%  Similarity=0.165  Sum_probs=28.6

Q ss_pred             HHHHHHHHHhhhhhhhhccccC-CCCCcccCCccCHHHHHHHHHHHHH
Q 028504           57 IMMNNYANAINQLADVHIDKVN-KPYLPLACGDFSMGEGLAITIASPL  103 (208)
Q Consensus        57 ~l~~~a~~~iNd~~D~~~D~~~-~~~RPl~sG~is~~~a~~~~~~l~~  103 (208)
                      .+...+....||+.|+|.||++ +|.-|+.-|   ++.+......+..
T Consensus       193 ~l~~~~i~~~n~~~D~e~D~~~G~~Tlpv~lG---~~~a~~~~~~l~~  237 (306)
T TIGR02056       193 SIAGLGIAIVNDFKSVEGDRALGLQSLPVAFG---IETAAWICVGAID  237 (306)
T ss_pred             HHHHHHHHHHHHccChHHHHHcCCcCcchhcC---hHHHHHHHHHHHH
Confidence            3455666789999999999975 466666555   3455444444333

This model represents the strictly cyanobacterial and plant-specific chlorophyll synthase ChlG. ChlG is the enzyme (esterase) which attaches the side chain moiety onto chlorophyllide a. Both geranylgeranyl and phytyl pyrophosphates are substrates to varying degrees in enzymes from different sources. Thus, ChlG may act as the final or penultimate step in chlorophyll biosynthesis (along with the geranylgeranyl reductase, ChlP).

>PRK06080 1,4-dihydroxy-2-naphthoate octaprenyltransferase; Validated

Probab=90.50  E-value=1.2  Score=37.98  Aligned_cols=49  Identities=20%  Similarity=0.215  Sum_probs=30.8

Q ss_pred             HHHHHHHHHHHhhhhhhhhccccC-CCCCcccCCccCHHHHHHHHHHHHHHHH
Q 028504           55 PAIMMNNYANAINQLADVHIDKVN-KPYLPLACGDFSMGEGLAITIASPLMAV  106 (208)
Q Consensus        55 ~~~l~~~a~~~iNd~~D~~~D~~~-~~~RPl~sG~is~~~a~~~~~~l~~~~~  106 (208)
                      ...+........||+.|+|.||.+ +++-|..=|   .+.+..+...+..++.
T Consensus       176 ~~~l~~~~~~~~n~~~D~~~D~~~G~~Tl~v~lG---~~~a~~~~~~l~~~~~  225 (293)
T PRK06080        176 PCGLLIGAVLLANNIRDIETDRENGKNTLAVRLG---DKNARRLHAALLALAY  225 (293)
T ss_pred             HHHHHHHHHHHhcCCCcchhHHHcCCeeEEeeEC---cHhHHHHHHHHHHHHH
Confidence            344556667789999999999976 455554434   4555544444444443

>PRK12884 ubiA prenyltransferase; Reviewed

Probab=89.42  E-value=2.6  Score=35.65  Aligned_cols=34  Identities=21%  Similarity=0.326  Sum_probs=24.7

Q ss_pred             HHHHHHHHHHHhhhhhhhhccccC-CCCCcccCCc
Q 028504           55 PAIMMNNYANAINQLADVHIDKVN-KPYLPLACGD   88 (208)
Q Consensus        55 ~~~l~~~a~~~iNd~~D~~~D~~~-~~~RPl~sG~   88 (208)
                      ..++.+.+-...||+.|+|.||.+ .|.=|+.-|+
T Consensus       163 ~~~~~~~~~~~~~~~~D~e~D~~~G~~Tl~v~~G~  197 (279)
T PRK12884        163 MAFLMTLGREIMKDIEDVEGDRLRGARTLAILYGE  197 (279)
T ss_pred             HHHHHHHHHHHHHHhhhhhhHHHcCCeeechHhcH
Confidence            334555566789999999999875 4667765555

>TIGR01476 chlor_syn_BchG bacteriochlorophyll/chlorophyll synthetase

Probab=89.36  E-value=2.3  Score=36.10  Aligned_cols=31  Identities=19%  Similarity=0.174  Sum_probs=23.0

Q ss_pred             HHHHHHHHhhhhhhhhccccC-CCCCcccCCc
Q 028504           58 MMNNYANAINQLADVHIDKVN-KPYLPLACGD   88 (208)
Q Consensus        58 l~~~a~~~iNd~~D~~~D~~~-~~~RPl~sG~   88 (208)
                      +...+....||+.|+|.||.+ ++.-|+.=|+
T Consensus       172 l~~~~i~~~nd~~D~~~D~~~G~~Tl~v~lG~  203 (283)
T TIGR01476       172 LGAHGIMTLNDFKSVEGDRQLGLRSLPVMIGV  203 (283)
T ss_pred             HHHHHHHHHHhccchhhHHHcCCcCcceEEcH
Confidence            345556789999999999975 4667765555

This model describes a subfamily of a large family of polyprenyltransferases (pfam01040) that also includes 4-hydroxybenzoate octaprenyltransferase and protoheme IX farnesyltransferase (heme O synthase). Members of this family are found exclusively in photosynthetic organisms, including a single copy in Arabidopsis thaliana.

>PRK12847 ubiA 4-hydroxybenzoate polyprenyltransferase; Reviewed

Probab=89.29  E-value=2.4  Score=36.06  Aligned_cols=36  Identities=14%  Similarity=0.013  Sum_probs=26.3

Q ss_pred             HHHHHHHHHHHHhhhhhhhhccccC-CCCCcccCCcc
Q 028504           54 VPAIMMNNYANAINQLADVHIDKVN-KPYLPLACGDF   89 (208)
Q Consensus        54 l~~~l~~~a~~~iNd~~D~~~D~~~-~~~RPl~sG~i   89 (208)
                      +..++-+.+-...|++.|+|.|+.+ .|.-|+.-|+-
T Consensus       172 ~~~~~w~~~~~~~~a~~D~e~D~~~G~~tl~v~~G~~  208 (285)
T PRK12847        172 IGCIFWTIGYDTIYAYQDKKDDLKIGVKSTAIYFGNK  208 (285)
T ss_pred             HHHHHHHHHHHHHHHhccHhhHHHcCCchhHHHhccc
Confidence            3445566666689999999999975 47777766653

>PRK12848 ubiA 4-hydroxybenzoate octaprenyltransferase; Reviewed

Probab=88.50  E-value=3  Score=35.46  Aligned_cols=37  Identities=11%  Similarity=0.076  Sum_probs=27.1

Q ss_pred             HHHHHHHHHHHHhhhhhhhhccccC-CCCCcccCCccC
Q 028504           54 VPAIMMNNYANAINQLADVHIDKVN-KPYLPLACGDFS   90 (208)
Q Consensus        54 l~~~l~~~a~~~iNd~~D~~~D~~~-~~~RPl~sG~is   90 (208)
                      +...+-+..-...|++.|+|-||+. .|.-|+.-|+=+
T Consensus       169 ~~~~~w~~~~~~~~a~~D~e~D~~~G~~tlpv~~G~~~  206 (282)
T PRK12848        169 LANILWTVAYDTQYAMVDRDDDLKIGIKSTAILFGRYD  206 (282)
T ss_pred             HHHHHHHHHHHHHHHhccHhhHHHcCCccccHHhcccc
Confidence            4555556666678999999999975 477787766543

>PRK12888 ubiA prenyltransferase; Reviewed

Probab=88.47  E-value=3.2  Score=35.45  Aligned_cols=36  Identities=14%  Similarity=0.060  Sum_probs=26.4

Q ss_pred             HHHHHHHHHHHHhhhhhhhhccccC-CCCCcccCCcc
Q 028504           54 VPAIMMNNYANAINQLADVHIDKVN-KPYLPLACGDF   89 (208)
Q Consensus        54 l~~~l~~~a~~~iNd~~D~~~D~~~-~~~RPl~sG~i   89 (208)
                      +...+-+.+-..+|++.|+|-||.. .|+-|+.-|+-
T Consensus       166 ~~~~~w~~~~~~i~a~~D~e~D~~~Gv~sl~v~~G~~  202 (284)
T PRK12888        166 LAVGLWIGGFDLIYACQDAEVDRRIGVRSVPARFGVR  202 (284)
T ss_pred             HHHHHHHHHHHHHHHhhhHHHHHHCCCcCcchhhCch
Confidence            3445556677899999999999975 46777666653

>PRK12871 ubiA prenyltransferase; Reviewed

Probab=87.83  E-value=3.5  Score=35.54  Aligned_cols=36  Identities=14%  Similarity=0.060  Sum_probs=27.3

Q ss_pred             HHHHHHHHHHHHhhhhhhhhccccC-CCCCcccCCcc
Q 028504           54 VPAIMMNNYANAINQLADVHIDKVN-KPYLPLACGDF   89 (208)
Q Consensus        54 l~~~l~~~a~~~iNd~~D~~~D~~~-~~~RPl~sG~i   89 (208)
                      +...+-+..-...||+.|+|.|+.+ .|.-|+.-|+-
T Consensus       182 ~~~~~w~~~~~~~~a~~D~e~D~~~G~~Tlpv~~G~~  218 (297)
T PRK12871        182 VFFYPWTMAHLGLNDFIDLENDRARGMKSIAVLYGMK  218 (297)
T ss_pred             HHHHHHHHHHHHHHHHhhhhhHHHcCCeeeeeeechH
Confidence            3445556667789999999999975 57888877764

>PRK05951 ubiA prenyltransferase; Reviewed

Probab=87.67  E-value=13  Score=31.92  Aligned_cols=34  Identities=21%  Similarity=0.252  Sum_probs=23.8

Q ss_pred             HHHHHHHHhhhhhhhhccccCC-CCCcccCCccCHHHH
Q 028504           58 MMNNYANAINQLADVHIDKVNK-PYLPLACGDFSMGEG   94 (208)
Q Consensus        58 l~~~a~~~iNd~~D~~~D~~~~-~~RPl~sG~is~~~a   94 (208)
                      +..+.....||+.|+|.||.+. ++-|+   ++.++.+
T Consensus       182 l~~~~il~~n~~~D~e~D~~~G~~Tlav---~lG~~~a  216 (296)
T PRK05951        182 LLMALVLLSNNLRDIEDDERKGIPTLAV---IFGRRGA  216 (296)
T ss_pred             HHHHHHHHHCCCccchhHHHCCCeeeee---eEcHhhH
Confidence            4456677899999999999764 44443   4555555

>PRK11383 hypothetical protein; Provisional

Probab=87.62  E-value=8.4  Score=29.55  Aligned_cols=36  Identities=11%  Similarity=0.155  Sum_probs=22.8

Q ss_pred             HHhcCCccccHHHHHHHHHHHHHHHHHHHhhcCCcc
Q 028504          171 IVLGNPVAFTKPVLFTAAYMVIWNAAIAFVKVTNSE  206 (208)
Q Consensus       171 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~D~  206 (208)
                      +...++...+.-.+....++....-++.+-||+||.
T Consensus        93 GLwNA~l~lsEKGfY~~af~lsLFgai~vQKn~RD~  128 (145)
T PRK11383         93 GLWNATLLLSEKGFYGLAFFLSLFGAVAVQKNIRDA  128 (145)
T ss_pred             HHhcCCcchhhhhHHHHHHHHHHHHHHHHHhhhhhh
Confidence            344556666665555544444444568999999997

>PRK12882 ubiA prenyltransferase; Reviewed

Probab=87.03  E-value=3.8  Score=34.64  Aligned_cols=32  Identities=19%  Similarity=0.289  Sum_probs=23.6

Q ss_pred             HHHHHHHHHhhhhhhhhccccCC-CCCcccCCc
Q 028504           57 IMMNNYANAINQLADVHIDKVNK-PYLPLACGD   88 (208)
Q Consensus        57 ~l~~~a~~~iNd~~D~~~D~~~~-~~RPl~sG~   88 (208)
                      ++...+-..+||+.|.|-||.+. |.-|+.-|+
T Consensus       167 fl~~~~~~~~~~~~D~e~D~~~G~~tlpv~~G~  199 (276)
T PRK12882        167 ALATLAREIIKDVEDIEGDRAEGARTLPILIGV  199 (276)
T ss_pred             HHHHHHHHHHhhhhhhhhHHHcCCccccHHhhH
Confidence            34455667899999999999754 677765555

>PRK12883 ubiA prenyltransferase UbiA-like protein; Reviewed

Probab=86.52  E-value=3.7  Score=34.72  Aligned_cols=31  Identities=23%  Similarity=0.426  Sum_probs=23.1

Q ss_pred             HHHHHHHHhhhhhhhhccccC-CCCCcccCCc
Q 028504           58 MMNNYANAINQLADVHIDKVN-KPYLPLACGD   88 (208)
Q Consensus        58 l~~~a~~~iNd~~D~~~D~~~-~~~RPl~sG~   88 (208)
                      +.+.+-...||+.|+|.||+. .|.=|+.-|+
T Consensus       165 l~~~~~~~~~~~~D~e~D~~~G~~Tlpv~~G~  196 (277)
T PRK12883        165 LVNVAREIMKDIEDIEGDKAKGAKTLPIIIGK  196 (277)
T ss_pred             HHHHHHHHHhhhhhhccHHHcCCcCcChHhcH
Confidence            344455678999999999975 5777876665

>PRK12870 ubiA 4-hydroxybenzoate polyprenyltransferase; Reviewed

Probab=86.33  E-value=4.2  Score=34.82  Aligned_cols=39  Identities=8%  Similarity=0.041  Sum_probs=28.8

Q ss_pred             HHHHHHHHHHHHhhhhhhhhccccCC-CCCcccCCccCHH
Q 028504           54 VPAIMMNNYANAINQLADVHIDKVNK-PYLPLACGDFSMG   92 (208)
Q Consensus        54 l~~~l~~~a~~~iNd~~D~~~D~~~~-~~RPl~sG~is~~   92 (208)
                      +..++-+.+-..+|++.|+|-|++.. |.-|+.-|+-+..
T Consensus       173 ~~~~lw~~~~d~~~a~~D~e~D~~~G~~slav~~G~~~~~  212 (290)
T PRK12870        173 AATVFWTLGFDTVYAMSDREDDLRIGVNSSAIFFGRYAPE  212 (290)
T ss_pred             HHHHHHHHHHHHHHHhhhHhhHHHCCCcchhHHhccccHH
Confidence            45566777778899999999998754 6777766655444

>COG0382 UbiA 4-hydroxybenzoate polyprenyltransferase and related prenyltransferases [Coenzyme metabolism]

Probab=85.62  E-value=21  Score=30.29  Aligned_cols=72  Identities=24%  Similarity=0.191  Sum_probs=36.5

Q ss_pred             hHHHHHHHHHhhhchhhHH----HHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHHHHHHHHHHHH-Hhhhhhhhhccc-
Q 028504            3 VLNKKCDAFYRLTRPYSCV----SIIAALLSVSLLPLQSPADFTPKLIIEAFKCMVPAIMMNNYAN-AINQLADVHIDK-   76 (208)
Q Consensus         3 ~~~~~~~~~l~l~Rp~~~~----~~~~~~~~g~~la~~~~~~~~~~~~~~~l~~~l~~~l~~~a~~-~iNd~~D~~~D~-   76 (208)
                      +..+..+.++|+.||.++.    ........+. -....   .....+  ..++....-......| ....=.|++.+| 
T Consensus         8 ~~~~~~~~l~r~~r~i~~l~~~~~~~~~~~~~~-~~~~~---~~~~~l--~~l~~~~~~~ag~~iND~~D~eiD~~n~rt   81 (289)
T COG0382           8 NKLKALLKLLRLDRPIFNLLLLLPALLGLLLAA-SGLPS---LKLLLL--AFLAFFLARSAGYVINDLADREIDRINPRT   81 (289)
T ss_pred             HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHH-cCCch---HHHHHH--HHHHHHHHHHHhHHHHHHhhhhccCCCCCc
Confidence            4466778899999998754    3333333332 11111   111111  1122333444444455 455558998776 


Q ss_pred             cCCC
Q 028504           77 VNKP   80 (208)
Q Consensus        77 ~~~~   80 (208)
                      .++|
T Consensus        82 ~~RP   85 (289)
T COG0382          82 KNRP   85 (289)
T ss_pred             cCCC
Confidence            5664

>TIGR00751 menA 1,4-dihydroxy-2-naphthoate octaprenyltransferase

Probab=85.45  E-value=4.5  Score=34.64  Aligned_cols=46  Identities=15%  Similarity=0.059  Sum_probs=29.8

Q ss_pred             HHHHHHHHHhhhhhhhhccccCC-CCCcccCCccCHHHHHHHHHHHHHHH
Q 028504           57 IMMNNYANAINQLADVHIDKVNK-PYLPLACGDFSMGEGLAITIASPLMA  105 (208)
Q Consensus        57 ~l~~~a~~~iNd~~D~~~D~~~~-~~RPl~sG~is~~~a~~~~~~l~~~~  105 (208)
                      .+..+.....||+.|+|.|+.+. ++-|.   ++..+.+..+...+...+
T Consensus       174 g~l~~~il~~Nn~~D~~~D~~~Gk~Tl~v---~lG~~~a~~l~~~l~~~a  220 (284)
T TIGR00751       174 GLLACAVLNINNLRDIPTDARAGKNTLAV---RLGDARTRMYHQGLLAVA  220 (284)
T ss_pred             HHHHHHHHHHcCcccchhHHHcCCEeehh---hcchHhHHHHHHHHHHHH
Confidence            34556666799999999999864 44454   444566655555554444

This membrane-associated enzyme converts 1,4-dihydroxy-2-naphthoic acid (DHNA) to demethylmenaquinone, a step in menaquinone biosynthesis.

>PRK12887 ubiA tocopherol phytyltransferase; Reviewed

Probab=83.62  E-value=10  Score=32.82  Aligned_cols=34  Identities=12%  Similarity=0.152  Sum_probs=24.4

Q ss_pred             HHHHHHHHHHHhhhhhhhhccccC-CCCCcccCCc
Q 028504           55 PAIMMNNYANAINQLADVHIDKVN-KPYLPLACGD   88 (208)
Q Consensus        55 ~~~l~~~a~~~iNd~~D~~~D~~~-~~~RPl~sG~   88 (208)
                      ..++...+-..+||+.|+|-||.+ ++.-|+-=|+
T Consensus       190 ~~~~~~~~~~l~~di~D~egD~~~Gi~Tlav~lG~  224 (308)
T PRK12887        190 FVLVFTFAIAIFKDIPDMEGDRQYQITTFTLRLGK  224 (308)
T ss_pred             HHHHHHHHHHHHHhccchhhHHHcCCcchhHHHhH
Confidence            445566677789999999999975 4566654443

>PRK12874 ubiA prenyltransferase; Reviewed

Probab=83.53  E-value=19  Score=30.80  Aligned_cols=36  Identities=17%  Similarity=0.217  Sum_probs=26.5

Q ss_pred             HHHHHHHHHHHHhhhhhhhhccccC-CCCCcccCCcc
Q 028504           54 VPAIMMNNYANAINQLADVHIDKVN-KPYLPLACGDF   89 (208)
Q Consensus        54 l~~~l~~~a~~~iNd~~D~~~D~~~-~~~RPl~sG~i   89 (208)
                      +...+-+.+-..+|++.|+|.||+. .|.-|+.-|+-
T Consensus       174 ~~~~~w~~~~~~~~a~~D~~~D~~~Gi~slpv~~G~~  210 (291)
T PRK12874        174 LGVMFWVAGFDLLYSLQDMEFDKKRGLHSIPSKFGEK  210 (291)
T ss_pred             HHHHHHHHHHHHHHHhccHHHHHHcCCCcccHHhhhH
Confidence            3445666666789999999999864 57778776663

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00